# command:# Seed set to 1274876952 # command:# Prefix for input files set to # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-40pc-3157.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 73963 examples # computed average trans backbone unit before proline from 2748 examples # computed average cis backbone unit from 121 examples # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0030 # O= -0.1498 2.2443 0.0015 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4583 0.0000 -0.0000 # cis backbone unit: # CA= -0.1445 2.4529 0.0000 # O= -2.0291 0.9731 0.0015 # C= -0.8027 1.0766 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0013 # O= -0.1234 2.2461 0.0071 # C= -0.6870 1.1519 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4658 0.0000 -0.0000 # After reading dunbrack-40pc-3157.atoms have 3157 chains in training database # Count of chains,residues,atoms: 3157,715852,5589609 # 705670 residues have no bad marker # 4645 residues lack atoms needed to compute omega # 2103 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 9 # HAS_OXT 1555 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 4577 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 1399 # NON_PLANAR_PEPTIDE 87 # BAD_PEPTIDE 4167 # HIGH_B_FACTOR 0 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-40pc-3157.rot # command:CPU_time= 34.835 sec, elapsed time= 37.319 sec. # command:# Prefix for input files set to # command:# Making conformation for sequence T0547 numbered 1 through 611 Created new target T0547 from T0547.a2m # command:# command:# No conformations to remove in PopConform # command:# Prefix for input files set to # command:# reading script from file costfcn-init.under # Prefix for input files set to /projects/compbio/lib/alphabet/ # Read 4 alphabets, 0 BackgroundProbs, and 0 FeatureCondFeatureCostFcns from alpha.alphabet # Read 2 alphabets, 0 BackgroundProbs, and 0 FeatureCondFeatureCostFcns from anglevector.alphabet # Read 29 alphabets, 0 BackgroundProbs, and 0 FeatureCondFeatureCostFcns from burial.alphabet # Read 3 alphabets, 0 BackgroundProbs, and 0 FeatureCondFeatureCostFcns from burial-sep.alphabet # Read 5 alphabets, 0 BackgroundProbs, and 0 FeatureCondFeatureCostFcns from two-spot-burial.alphabet # Read 13 alphabets, 0 BackgroundProbs, and 0 FeatureCondFeatureCostFcns from hbonds.alphabet # Read 1 alphabets, 0 BackgroundProbs, and 0 FeatureCondFeatureCostFcns from str4.alphabet Unrecognized 1th alphabet rel_sa10 for BackgroundProbs that has no name Unrecognized 1th alphabet abs_sa7 for BackgroundProbs that has no name Unrecognized 1th alphabet Bystroff for BackgroundProbs that has no name Unrecognized 1th alphabet chi1_3 for BackgroundProbs that has no name Unrecognized 1th alphabet DSSP for BackgroundProbs that has no name Unrecognized 1th alphabet EBGHSTL for BackgroundProbs that has no name Unrecognized 1th alphabet str for BackgroundProbs that has no name Unrecognized 1th alphabet str2 for BackgroundProbs that has no name Unrecognized 1th alphabet dssp_ehl2 for BackgroundProbs that has no name Unrecognized 1th alphabet STRIDE for BackgroundProbs that has no name Unrecognized 1th alphabet EBGHTL for BackgroundProbs that has no name Unrecognized 1th alphabet stride_ehl2 for BackgroundProbs that has no name Unrecognized 1th alphabet tco for BackgroundProbs that has no name Unrecognized 1th alphabet pb for BackgroundProbs that has no name Unrecognized 1th alphabet gamma_2 for BackgroundProbs that has no name Unrecognized 1th alphabet str5 for BackgroundProbs that has no name Unrecognized 1th alphabet strand_sep for BackgroundProbs that has no name Unrecognized 1th alphabet r_rot_psi_omega_16 for BackgroundProbs that has no name Unrecognized 1th alphabet r_rot_NO_dist2_omega_17_full_tweak for BackgroundProbs that has no name Unrecognized 1th alphabet hbond_psi_25 for BackgroundProbs that has no name Unrecognized 1th alphabet hbond_r_rot_24 for BackgroundProbs that has no name Unrecognized 1th alphabet hbond_r_rot_25 for BackgroundProbs that has no name Unrecognized 1th alphabet zeta6 for BackgroundProbs that has no name Unrecognized 1th alphabet zeta12 for BackgroundProbs that has no name Unrecognized 1th alphabet phizeta7 for BackgroundProbs that has no name Unrecognized 1th alphabet phizeta9 for BackgroundProbs that has no name Unrecognized 1th alphabet phizeta10 for BackgroundProbs that has no name Unrecognized 1th alphabet phizetagauss6 for BackgroundProbs that has no name Unrecognized 1th alphabet phizetagauss7 for BackgroundProbs that has no name Unrecognized 1th alphabet phizetagauss8 for BackgroundProbs that has no name Unrecognized 1th alphabet phizetagauss10 for BackgroundProbs that has no name Unrecognized 1th alphabet phizetagauss7_hbond_21 for BackgroundProbs that has no name Unrecognized 1th alphabet phizetagauss7_hbond_17 for BackgroundProbs that has no name Unrecognized 1th alphabet phizetagauss7_hbond_16 for BackgroundProbs that has no name Unrecognized 1th alphabet phizetagauss7_hbond_15 for BackgroundProbs that has no name Unrecognized 1th alphabet phizetagauss7_hbond_edge_19 for BackgroundProbs that has no name Unrecognized 1th alphabet phizetagauss7_hbond_edge_17 for BackgroundProbs that has no name Unrecognized 1th alphabet hbond_edge_zeta_bend_70 for BackgroundProbs that has no name Unrecognized 1th alphabet hbond_edge_bend_70 for BackgroundProbs that has no name Unrecognized 1th alphabet hbond_edge_zeta for BackgroundProbs that has no name # Read 0 alphabets, 31 BackgroundProbs, and 0 FeatureCondFeatureCostFcns from dunbrack-in-scop.backgrounds # Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # ReadAtomType exp2-pdb.types Read AtomType exp2-pdb with 50 types. # ReadClashTable exp2-pdb-dunbrack-40pc-3157-2symm.clash # Read ClashTable exp2-pdb-dunbrack-40pc-3157-2symm checking bonds symmetric at MaxSep 2 # Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # reading histogram from smoothed-monomeric-50pc-CB14.hist # created burial cost function cb14 with radius 14.000 with spots at CB counting only CB # Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.650 with spots at near-backbone-center.spot counting only near-backbone-count.spot # Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.900 with spots at way-back-center.spot counting only way-back-count.spot # reading histogram from dunbrack-40pc-3157-CB8-sep9.hist # created burial cost function CB8-sep9 with radius 8.000 with spots at CB counting only CB with minimum separation 9 # Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5.000 with spots at monomeric-50pc-dry-5.spot # Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.500 with spots at monomeric-50pc-wet-6.5.spot # Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.500 with spots at monomeric-50pc-dry-6.5.spot # Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8.000 with spots at monomeric-50pc-dry-8.spot # Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10.000 with spots at monomeric-50pc-dry-10.spot # Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12.000 with spots at monomeric-50pc-dry-12.spot # reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # Prefix for input files set to # CreateCombinedNNet created CombinedNNet pred_alpha_back # created predicted alpha cost function pred_alpha_back with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # CreateCombinedNNet created CombinedNNet bys_back # created predicted AngleVectorPredCostFcn pred_bys_back # CreateCombinedNNet created CombinedNNet pb_back # created predicted AngleVectorPredCostFcn pred_pb_back # CreateCombinedNNet created CombinedNNet n_sep_back # created predicted HbondPredCostFcn pred_n_sep_back # CreateCombinedNNet created CombinedNNet o_sep_back # created predicted HbondPredCostFcn pred_o_sep_back # CreateCombinedNNet created CombinedNNet n_notor_back # created predicted HbondPredCostFcn pred_n_notor_back # CreateCombinedNNet created CombinedNNet o_notor_back # created predicted HbondPredCostFcn pred_o_notor_back # CreateCombinedNNet created CombinedNNet n_notor2_back # created predicted HbondPredCostFcn pred_n_notor2_back # CreateCombinedNNet created CombinedNNet o_notor2_back # created predicted HbondPredCostFcn pred_o_notor2_back # CreateCombinedNNet created CombinedNNet str4_back # created predicted HbondPredCostFcn pred_str4_back # CreateCombinedNNet created CombinedNNet pred_nb11_back # created predicted BurialPredCostFcn pred_nb11_back # CreateCombinedNNet created CombinedNNet pred_cb14_back # created predicted BurialPredCostFcn pred_cb14_back # CreateCombinedNNet created CombinedNNet pred_CB8_sep9_back # created predicted BurialPredCostFcn pred_CB8_sep9_back # future Constraint commands -> align_constraints # future HelixConstraint commands -> align_constraints # future StrandConstraint commands -> align_constraints # future SheetConstraint commands -> align_constraints # future Hbond commands -> align_constraints # future SSbond commands -> align_constraints # reading script from file align.constraints # Constraint # added constraint: constraint((T0547)L108.CB, (T0547)P128.CB) [> 3.770 = 6.284 < 8.169] w=1.000 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)L108.CB) [> 3.352 = 5.586 < 7.262] w=1.000 to align_constraints # Constraint # added constraint: constraint((T0547)A110.CB, (T0547)I129.CB) [> 3.811 = 6.352 < 8.257] w=0.999 to align_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)E109.CB) [> 2.509 = 4.181 < 5.435] w=0.999 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)E109.CB) [> 4.034 = 6.724 < 8.741] w=0.999 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)L97.CB) [> 2.860 = 4.767 < 6.197] w=0.999 to align_constraints # Constraint # added constraint: constraint((T0547)A110.CB, (T0547)A119.CB) [> 3.782 = 6.303 < 8.194] w=0.997 to align_constraints # Constraint # added constraint: constraint((T0547)L108.CB, (T0547)A119.CB) [> 3.263 = 5.438 < 7.069] w=0.997 to align_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)H329.CB) [> 2.934 = 4.889 < 6.356] w=0.996 to align_constraints # Constraint # added constraint: constraint((T0547)L54.CB, (T0547)H329.CB) [> 2.519 = 4.198 < 5.457] w=0.996 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)H329.CB) [> 3.136 = 5.227 < 6.795] w=0.996 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)A330.CB) [> 3.180 = 5.299 < 6.889] w=0.996 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)H329.CB) [> 3.416 = 5.693 < 7.401] w=0.996 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)I333.CB) [> 3.218 = 5.364 < 6.973] w=0.996 to align_constraints # Constraint # added constraint: constraint((T0547)L108.CB, (T0547)I129.CB) [> 3.305 = 5.509 < 7.161] w=0.985 to align_constraints # Constraint # added constraint: constraint((T0547)A110.CB, (T0547)T130.CB) [> 4.206 = 7.009 < 9.112] w=0.985 to align_constraints # Constraint # added constraint: constraint((T0547)L163.CB, (T0547)A214.CB) [> 3.863 = 6.439 < 8.370] w=0.969 to align_constraints # Constraint # added constraint: constraint((T0547)G107.CA, (T0547)P128.CB) [> 2.977 = 4.962 < 6.450] w=0.960 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)G107.CA) [> 3.844 = 6.407 < 8.329] w=0.960 to align_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)L97.CB) [> 3.721 = 6.201 < 8.061] w=0.960 to align_constraints # Constraint # added constraint: constraint((T0547)V94.CB, (T0547)A119.CB) [> 3.640 = 6.066 < 7.886] w=0.960 to align_constraints # Constraint # added constraint: constraint((T0547)G181.CA, (T0547)I230.CB) [> 3.897 = 6.494 < 8.443] w=0.960 to align_constraints # Constraint # added constraint: constraint((T0547)G181.CA, (T0547)T228.CB) [> 3.242 = 5.404 < 7.025] w=0.960 to align_constraints # Constraint # added constraint: constraint((T0547)V94.CB, (T0547)L108.CB) [> 3.884 = 6.474 < 8.416] w=0.959 to align_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)N96.CB) [> 3.505 = 5.841 < 7.594] w=0.959 to align_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)L118.CB) [> 3.993 = 6.655 < 8.651] w=0.959 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)L108.CB) [> 3.672 = 6.120 < 7.956] w=0.959 to align_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)F93.CB) [> 3.900 = 6.501 < 8.451] w=0.959 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)E109.CB) [> 2.854 = 4.757 < 6.184] w=0.958 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)L332.CB) [> 3.402 = 5.670 < 7.371] w=0.956 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)V331.CB) [> 2.922 = 4.870 < 6.331] w=0.956 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)I333.CB) [> 3.786 = 6.309 < 8.202] w=0.956 to align_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)H329.CB) [> 4.228 = 7.046 < 9.160] w=0.956 to align_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)I269.CB) [> 3.336 = 5.559 < 7.227] w=0.947 to align_constraints # Constraint # added constraint: constraint((T0547)G107.CA, (T0547)I129.CB) [> 4.222 = 7.036 < 9.147] w=0.946 to align_constraints # Constraint # added constraint: constraint((T0547)G111.CA, (T0547)V131.CB) [> 3.444 = 5.740 < 7.462] w=0.946 to align_constraints # Constraint # added constraint: constraint((T0547)G111.CA, (T0547)N132.CB) [> 3.075 = 5.125 < 6.662] w=0.946 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)A330.CB) [> 3.546 = 5.909 < 7.682] w=0.943 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)L332.CB) [> 4.497 = 7.495 < 9.743] w=0.943 to align_constraints # Constraint # added constraint: constraint((T0547)G181.CA, (T0547)F227.CB) [> 3.705 = 6.175 < 8.028] w=0.934 to align_constraints # Constraint # added constraint: constraint((T0547)L160.CB, (T0547)A214.CB) [> 3.661 = 6.101 < 7.932] w=0.934 to align_constraints # Constraint # added constraint: constraint((T0547)L163.CB, (T0547)L218.CB) [> 3.703 = 6.172 < 8.023] w=0.934 to align_constraints # Constraint # added constraint: constraint((T0547)L54.CB, (T0547)N328.CB) [> 3.794 = 6.323 < 8.219] w=0.930 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)A334.CB) [> 2.849 = 4.748 < 6.173] w=0.930 to align_constraints # Constraint # added constraint: constraint((T0547)I157.CB, (T0547)G181.CA) [> 3.707 = 6.179 < 8.032] w=0.920 to align_constraints # Constraint # added constraint: constraint((T0547)G181.CA, (T0547)H231.CB) [> 3.680 = 6.133 < 7.973] w=0.920 to align_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)L100.CB) [> 3.325 = 5.541 < 7.204] w=0.920 to align_constraints # Constraint # added constraint: constraint((T0547)I180.CB, (T0547)F227.CB) [> 3.566 = 5.943 < 7.726] w=0.920 to align_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)R183.CB) [> 2.978 = 4.963 < 6.452] w=0.920 to align_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)I230.CB) [> 3.210 = 5.350 < 6.955] w=0.920 to align_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)I230.CB) [> 3.674 = 6.123 < 7.960] w=0.920 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)G107.CA) [> 2.744 = 4.573 < 5.944] w=0.919 to align_constraints # Constraint # added constraint: constraint((T0547)A110.CB, (T0547)V131.CB) [> 3.460 = 5.766 < 7.496] w=0.919 to align_constraints # Constraint # added constraint: constraint((T0547)E109.CB, (T0547)T130.CB) [> 3.376 = 5.626 < 7.314] w=0.919 to align_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)A81.CB) [> 4.158 = 6.930 < 9.009] w=0.919 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)A330.CB) [> 4.098 = 6.830 < 8.879] w=0.916 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)V331.CB) [> 4.392 = 7.320 < 9.516] w=0.916 to align_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)V325.CB) [> 3.796 = 6.327 < 8.225] w=0.916 to align_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)V325.CB) [> 3.200 = 5.334 < 6.934] w=0.916 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)S321.CB) [> 3.940 = 6.567 < 8.537] w=0.916 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)G322.CA) [> 3.793 = 6.322 < 8.218] w=0.916 to align_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)S321.CB) [> 3.935 = 6.559 < 8.527] w=0.916 to align_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)G322.CA) [> 2.535 = 4.226 < 5.493] w=0.916 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)I333.CB) [> 4.101 = 6.836 < 8.887] w=0.916 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)L206.CB) [> 3.772 = 6.286 < 8.172] w=0.907 to align_constraints # Constraint # added constraint: constraint((T0547)F232.CB, (T0547)A251.CB) [> 3.252 = 5.421 < 7.047] w=0.907 to align_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)M149.CB) [> 3.900 = 6.500 < 8.450] w=0.906 to align_constraints # Constraint # added constraint: constraint((T0547)I180.CB, (T0547)Q226.CB) [> 3.789 = 6.315 < 8.209] w=0.894 to align_constraints # Constraint # added constraint: constraint((T0547)G133.CA, (T0547)T156.CB) [> 3.723 = 6.205 < 8.067] w=0.894 to align_constraints # Constraint # added constraint: constraint((T0547)L163.CB, (T0547)L217.CB) [> 3.402 = 5.670 < 7.371] w=0.894 to align_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)A81.CB) [> 3.562 = 5.937 < 7.718] w=0.892 to align_constraints # Constraint # added constraint: constraint((T0547)A81.CB, (T0547)S321.CB) [> 3.824 = 6.374 < 8.286] w=0.890 to align_constraints # Constraint # added constraint: constraint((T0547)I157.CB, (T0547)I180.CB) [> 3.181 = 5.301 < 6.892] w=0.880 to align_constraints # Constraint # added constraint: constraint((T0547)I157.CB, (T0547)L182.CB) [> 3.457 = 5.761 < 7.489] w=0.880 to align_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)H231.CB) [> 4.231 = 7.051 < 9.166] w=0.880 to align_constraints # Constraint # added constraint: constraint((T0547)R183.CB, (T0547)H231.CB) [> 3.073 = 5.122 < 6.659] w=0.880 to align_constraints # Constraint # added constraint: constraint((T0547)R183.CB, (T0547)F232.CB) [> 4.210 = 7.017 < 9.122] w=0.880 to align_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)H231.CB) [> 4.243 = 7.072 < 9.193] w=0.880 to align_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)F232.CB) [> 3.111 = 5.185 < 6.741] w=0.880 to align_constraints # Constraint # added constraint: constraint((T0547)V98.CB, (T0547)N124.CB) [> 3.370 = 5.617 < 7.302] w=0.880 to align_constraints # Constraint # added constraint: constraint((T0547)T156.CB, (T0547)G181.CA) [> 3.139 = 5.232 < 6.802] w=0.880 to align_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)N270.CB) [> 2.585 = 4.309 < 5.602] w=0.880 to align_constraints # Constraint # added constraint: constraint((T0547)I166.CB, (T0547)P178.CB) [> 3.532 = 5.886 < 7.652] w=0.880 to align_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)G205.CA) [> 2.676 = 4.461 < 5.799] w=0.880 to align_constraints # Constraint # added constraint: constraint((T0547)A81.CB, (T0547)G107.CA) [> 4.173 = 6.956 < 9.042] w=0.879 to align_constraints # Constraint # added constraint: constraint((T0547)L97.CB, (T0547)L108.CB) [> 4.369 = 7.281 < 9.465] w=0.879 to align_constraints # Constraint # added constraint: constraint((T0547)A81.CB, (T0547)Y106.CB) [> 3.350 = 5.584 < 7.259] w=0.878 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)I319.CB) [> 3.943 = 6.572 < 8.544] w=0.878 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)Y106.CB) [> 4.103 = 6.838 < 8.889] w=0.877 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)T156.CB) [> 3.929 = 6.548 < 8.512] w=0.876 to align_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)V325.CB) [> 3.649 = 6.081 < 7.906] w=0.876 to align_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)F324.CB) [> 3.790 = 6.316 < 8.211] w=0.876 to align_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)A326.CB) [> 4.020 = 6.700 < 8.710] w=0.876 to align_constraints # Constraint # added constraint: constraint((T0547)V94.CB, (T0547)Y122.CB) [> 3.253 = 5.422 < 7.049] w=0.876 to align_constraints # Constraint # added constraint: constraint((T0547)G159.CA, (T0547)L206.CB) [> 3.698 = 6.163 < 8.012] w=0.867 to align_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)F204.CB) [> 3.385 = 5.642 < 7.335] w=0.867 to align_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)T156.CB) [> 3.913 = 6.521 < 8.477] w=0.867 to align_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)T156.CB) [> 3.234 = 5.390 < 7.008] w=0.867 to align_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)A268.CB) [> 3.002 = 5.003 < 6.504] w=0.867 to align_constraints # Constraint # added constraint: constraint((T0547)G159.CA, (T0547)A214.CB) [> 4.017 = 6.695 < 8.703] w=0.867 to align_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)F318.CB) [> 3.105 = 5.175 < 6.728] w=0.866 to align_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)F324.CB) [> 4.050 = 6.750 < 8.775] w=0.863 to align_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)Y255.CB) [> 3.626 = 6.044 < 7.857] w=0.854 to align_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)L206.CB) [> 3.473 = 5.788 < 7.524] w=0.854 to align_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)A214.CB) [> 3.603 = 6.006 < 7.807] w=0.854 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)T409.CB) [> 3.479 = 5.798 < 7.538] w=0.850 to align_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)L266.CB) [> 3.584 = 5.973 < 7.764] w=0.850 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)V325.CB) [> 3.487 = 5.811 < 7.555] w=0.850 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)G205.CA) [> 2.723 = 4.539 < 5.901] w=0.841 to align_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)I129.CB) [> 3.767 = 6.279 < 8.163] w=0.841 to align_constraints # Constraint # added constraint: constraint((T0547)I157.CB, (T0547)I166.CB) [> 4.140 = 6.899 < 8.969] w=0.841 to align_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)I269.CB) [> 4.365 = 7.274 < 9.457] w=0.841 to align_constraints # Constraint # added constraint: constraint((T0547)T156.CB, (T0547)R183.CB) [> 3.001 = 5.002 < 6.502] w=0.841 to align_constraints # Constraint # added constraint: constraint((T0547)I157.CB, (T0547)R183.CB) [> 4.031 = 6.719 < 8.735] w=0.841 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)F318.CB) [> 3.659 = 6.098 < 7.927] w=0.839 to align_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)I319.CB) [> 3.500 = 5.834 < 7.584] w=0.838 to align_constraints # Constraint # added constraint: constraint((T0547)V94.CB, (T0547)N124.CB) [> 3.723 = 6.205 < 8.066] w=0.837 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)A330.CB) [> 4.548 = 7.580 < 9.854] w=0.837 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)H410.CB) [> 3.010 = 5.017 < 6.522] w=0.837 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)T207.CB) [> 3.345 = 5.575 < 7.248] w=0.827 to align_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)K267.CB) [> 3.581 = 5.968 < 7.759] w=0.827 to align_constraints # Constraint # added constraint: constraint((T0547)F232.CB, (T0547)L271.CB) [> 3.549 = 5.915 < 7.690] w=0.827 to align_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)L408.CB) [> 3.386 = 5.643 < 7.336] w=0.823 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)L408.CB) [> 4.044 = 6.741 < 8.763] w=0.823 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)H329.CB) [> 4.513 = 7.522 < 9.778] w=0.823 to align_constraints # Constraint # added constraint: constraint((T0547)L160.CB, (T0547)L217.CB) [> 3.713 = 6.188 < 8.044] w=0.814 to align_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)I254.CB) [> 3.617 = 6.029 < 7.838] w=0.814 to align_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)L206.CB) [> 3.928 = 6.546 < 8.510] w=0.814 to align_constraints # Constraint # added constraint: constraint((T0547)R183.CB, (T0547)L206.CB) [> 4.052 = 6.753 < 8.779] w=0.814 to align_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)A247.CB) [> 3.277 = 5.461 < 7.100] w=0.811 to align_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)L244.CB) [> 3.719 = 6.198 < 8.057] w=0.811 to align_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)I350.CB) [> 3.257 = 5.428 < 7.057] w=0.810 to align_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)L411.CB) [> 3.663 = 6.105 < 7.936] w=0.810 to align_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)F318.CB) [> 2.762 = 4.604 < 5.985] w=0.810 to align_constraints # Constraint # added constraint: constraint((T0547)L160.CB, (T0547)E213.CB) [> 3.946 = 6.577 < 8.550] w=0.810 to align_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)G205.CA) [> 3.659 = 6.098 < 7.927] w=0.801 to align_constraints # Constraint # added constraint: constraint((T0547)R183.CB, (T0547)G205.CA) [> 2.564 = 4.274 < 5.556] w=0.801 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)F232.CB) [> 4.466 = 7.443 < 9.675] w=0.801 to align_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)N270.CB) [> 4.257 = 7.096 < 9.224] w=0.801 to align_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)N96.CB) [> 3.792 = 6.321 < 8.217] w=0.801 to align_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)L108.CB) [> 4.616 = 7.694 < 10.002] w=0.799 to align_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)D316.CB) [> 3.909 = 6.515 < 8.470] w=0.799 to align_constraints # Constraint # added constraint: constraint((T0547)A81.CB, (T0547)F318.CB) [> 4.277 = 7.128 < 9.266] w=0.799 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)I333.CB) [> 4.615 = 7.692 < 10.000] w=0.797 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)L332.CB) [> 4.572 = 7.620 < 9.906] w=0.797 to align_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)P335.CB) [> 3.400 = 5.667 < 7.367] w=0.797 to align_constraints # Constraint # added constraint: constraint((T0547)T156.CB, (T0547)L182.CB) [> 4.436 = 7.394 < 9.612] w=0.797 to align_constraints # Constraint # added constraint: constraint((T0547)T156.CB, (T0547)I180.CB) [> 4.428 = 7.380 < 9.594] w=0.797 to align_constraints # Constraint # added constraint: constraint((T0547)A81.CB, (T0547)I319.CB) [> 3.327 = 5.544 < 7.208] w=0.797 to align_constraints # Constraint # added constraint: constraint((T0547)E109.CB, (T0547)E320.CB) [> 2.930 = 4.884 < 6.349] w=0.797 to align_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)E320.CB) [> 2.984 = 4.974 < 6.466] w=0.797 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)P335.CB) [> 4.255 = 7.092 < 9.220] w=0.797 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)L349.CB) [> 3.525 = 5.875 < 7.637] w=0.797 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)K348.CB) [> 4.134 = 6.890 < 8.957] w=0.797 to align_constraints # Constraint # added constraint: constraint((T0547)I180.CB, (T0547)L218.CB) [> 3.816 = 6.360 < 8.268] w=0.788 to align_constraints # Constraint # added constraint: constraint((T0547)R183.CB, (T0547)F204.CB) [> 3.604 = 6.006 < 7.808] w=0.788 to align_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)A251.CB) [> 3.894 = 6.491 < 8.438] w=0.788 to align_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)I269.CB) [> 3.941 = 6.568 < 8.539] w=0.788 to align_constraints # Constraint # added constraint: constraint((T0547)G111.CA, (T0547)G133.CA) [> 3.285 = 5.475 < 7.117] w=0.786 to align_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)I317.CB) [> 3.740 = 6.233 < 8.103] w=0.786 to align_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)I319.CB) [> 4.243 = 7.071 < 9.193] w=0.785 to align_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)G272.CA) [> 4.240 = 7.067 < 9.187] w=0.785 to align_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)S321.CB) [> 3.624 = 6.039 < 7.851] w=0.784 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)S403.CB) [> 4.064 = 6.773 < 8.805] w=0.784 to align_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)E406.CB) [> 4.194 = 6.990 < 9.086] w=0.784 to align_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)I407.CB) [> 3.703 = 6.171 < 8.022] w=0.784 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)N404.CB) [> 3.483 = 5.805 < 7.547] w=0.784 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)A405.CB) [> 3.733 = 6.222 < 8.089] w=0.784 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)E406.CB) [> 3.071 = 5.119 < 6.654] w=0.784 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)L408.CB) [> 4.058 = 6.764 < 8.793] w=0.784 to align_constraints # Constraint # added constraint: constraint((T0547)F232.CB, (T0547)A247.CB) [> 3.555 = 5.925 < 7.702] w=0.784 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)F204.CB) [> 4.020 = 6.700 < 8.710] w=0.774 to align_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)L211.CB) [> 3.595 = 5.992 < 7.790] w=0.774 to align_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)L266.CB) [> 3.595 = 5.992 < 7.790] w=0.774 to align_constraints # Constraint # added constraint: constraint((T0547)L108.CB, (T0547)T130.CB) [> 4.472 = 7.453 < 9.690] w=0.774 to align_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)L206.CB) [> 3.760 = 6.267 < 8.147] w=0.774 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)F232.CB) [> 3.093 = 5.156 < 6.702] w=0.774 to align_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)I317.CB) [> 3.691 = 6.152 < 7.998] w=0.773 to align_constraints # Constraint # added constraint: constraint((T0547)A119.CB, (T0547)I129.CB) [> 3.446 = 5.744 < 7.467] w=0.772 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)L349.CB) [> 3.427 = 5.711 < 7.425] w=0.770 to align_constraints # Constraint # added constraint: constraint((T0547)H233.CB, (T0547)G273.CA) [> 3.837 = 6.394 < 8.313] w=0.770 to align_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)S321.CB) [> 3.415 = 5.692 < 7.399] w=0.770 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)N404.CB) [> 3.818 = 6.363 < 8.272] w=0.770 to align_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)E320.CB) [> 3.871 = 6.452 < 8.387] w=0.770 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)E320.CB) [> 3.015 = 5.024 < 6.532] w=0.770 to align_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)E320.CB) [> 2.811 = 4.685 < 6.091] w=0.770 to align_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)I319.CB) [> 4.295 = 7.158 < 9.305] w=0.770 to align_constraints # Constraint # added constraint: constraint((T0547)H233.CB, (T0547)G272.CA) [> 3.247 = 5.412 < 7.035] w=0.770 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)I350.CB) [> 4.125 = 6.875 < 8.938] w=0.770 to align_constraints # Constraint # added constraint: constraint((T0547)L155.CB, (T0547)G181.CA) [> 4.152 = 6.920 < 8.996] w=0.761 to align_constraints # Constraint # added constraint: constraint((T0547)T156.CB, (T0547)H231.CB) [> 3.420 = 5.700 < 7.409] w=0.761 to align_constraints # Constraint # added constraint: constraint((T0547)L85.CB, (T0547)A110.CB) [> 3.440 = 5.733 < 7.453] w=0.760 to align_constraints # Constraint # added constraint: constraint((T0547)L85.CB, (T0547)E109.CB) [> 3.939 = 6.564 < 8.534] w=0.760 to align_constraints # Constraint # added constraint: constraint((T0547)L85.CB, (T0547)L108.CB) [> 3.334 = 5.557 < 7.224] w=0.760 to align_constraints # Constraint # added constraint: constraint((T0547)L85.CB, (T0547)V94.CB) [> 3.654 = 6.090 < 7.917] w=0.760 to align_constraints # Constraint # added constraint: constraint((T0547)E109.CB, (T0547)I129.CB) [> 4.101 = 6.835 < 8.886] w=0.760 to align_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)D316.CB) [> 4.094 = 6.823 < 8.870] w=0.760 to align_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)G111.CA) [> 3.481 = 5.801 < 7.541] w=0.758 to align_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)G107.CA) [> 4.186 = 6.976 < 9.069] w=0.758 to align_constraints # Constraint # added constraint: constraint((T0547)R183.CB, (T0547)H233.CB) [> 4.448 = 7.413 < 9.637] w=0.758 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)F93.CB) [> 4.267 = 7.112 < 9.245] w=0.757 to align_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)I319.CB) [> 3.656 = 6.094 < 7.922] w=0.757 to align_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)I254.CB) [> 3.797 = 6.328 < 8.227] w=0.748 to align_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)A268.CB) [> 4.383 = 7.306 < 9.497] w=0.748 to align_constraints # Constraint # added constraint: constraint((T0547)I157.CB, (T0547)A214.CB) [> 4.268 = 7.114 < 9.248] w=0.748 to align_constraints # Constraint # added constraint: constraint((T0547)N179.CB, (T0547)Q226.CB) [> 3.364 = 5.607 < 7.290] w=0.746 to align_constraints # Constraint # added constraint: constraint((T0547)M120.CB, (T0547)M149.CB) [> 3.633 = 6.055 < 7.872] w=0.745 to align_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)V131.CB) [> 3.743 = 6.238 < 8.109] w=0.745 to align_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)L351.CB) [> 3.810 = 6.351 < 8.256] w=0.744 to align_constraints # Constraint # added constraint: constraint((T0547)L155.CB, (T0547)P178.CB) [> 3.790 = 6.316 < 8.211] w=0.744 to align_constraints # Constraint # added constraint: constraint((T0547)L97.CB, (T0547)V325.CB) [> 4.160 = 6.933 < 9.013] w=0.744 to align_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)L271.CB) [> 3.976 = 6.627 < 8.615] w=0.734 to align_constraints # Constraint # added constraint: constraint((T0547)F204.CB, (T0547)H233.CB) [> 4.363 = 7.272 < 9.453] w=0.732 to align_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)K352.CB) [> 3.126 = 5.210 < 6.773] w=0.730 to align_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)A334.CB) [> 3.783 = 6.304 < 8.196] w=0.730 to align_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)L351.CB) [> 2.831 = 4.718 < 6.133] w=0.730 to align_constraints # Constraint # added constraint: constraint((T0547)G274.CA, (T0547)S321.CB) [> 3.875 = 6.459 < 8.396] w=0.730 to align_constraints # Constraint # added constraint: constraint((T0547)P178.CB, (T0547)L224.CB) [> 3.504 = 5.840 < 7.592] w=0.721 to align_constraints # Constraint # added constraint: constraint((T0547)I166.CB, (T0547)I180.CB) [> 3.947 = 6.579 < 8.553] w=0.721 to align_constraints # Constraint # added constraint: constraint((T0547)L163.CB, (T0547)I180.CB) [> 4.382 = 7.304 < 9.495] w=0.721 to align_constraints # Constraint # added constraint: constraint((T0547)F232.CB, (T0547)N270.CB) [> 4.439 = 7.399 < 9.619] w=0.721 to align_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)L211.CB) [> 3.905 = 6.509 < 8.461] w=0.721 to align_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)F79.CB) [> 2.693 = 4.488 < 5.835] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)E115.CB) [> 3.978 = 6.630 < 8.619] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0547)Y63.CB, (T0547)A81.CB) [> 3.509 = 5.848 < 7.602] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0547)A268.CB, (T0547)D316.CB) [> 3.062 = 5.103 < 6.633] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)T130.CB) [> 3.631 = 6.051 < 7.866] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0547)A110.CB, (T0547)N132.CB) [> 4.323 = 7.205 < 9.366] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0547)L85.CB, (T0547)A119.CB) [> 4.187 = 6.979 < 9.073] w=0.718 to align_constraints # Constraint # added constraint: constraint((T0547)L85.CB, (T0547)E115.CB) [> 3.556 = 5.927 < 7.705] w=0.718 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)K352.CB) [> 3.093 = 5.155 < 6.701] w=0.717 to align_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)G78.CA) [> 3.902 = 6.503 < 8.454] w=0.717 to align_constraints # Constraint # added constraint: constraint((T0547)L155.CB, (T0547)I180.CB) [> 3.326 = 5.543 < 7.206] w=0.717 to align_constraints # Constraint # added constraint: constraint((T0547)L155.CB, (T0547)N179.CB) [> 4.257 = 7.095 < 9.224] w=0.717 to align_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)F318.CB) [> 4.300 = 7.167 < 9.317] w=0.717 to align_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)E320.CB) [> 2.900 = 4.833 < 6.283] w=0.717 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)L332.CB) [> 4.008 = 6.679 < 8.683] w=0.717 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)A251.CB) [> 3.398 = 5.663 < 7.362] w=0.708 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)L155.CB) [> 4.179 = 6.965 < 9.055] w=0.708 to align_constraints # Constraint # added constraint: constraint((T0547)L211.CB, (T0547)I254.CB) [> 3.589 = 5.982 < 7.776] w=0.708 to align_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)L258.CB) [> 3.656 = 6.093 < 7.921] w=0.708 to align_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)A251.CB) [> 3.529 = 5.881 < 7.645] w=0.708 to align_constraints # Constraint # added constraint: constraint((T0547)N179.CB, (T0547)T228.CB) [> 3.046 = 5.077 < 6.601] w=0.707 to align_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)H410.CB) [> 4.228 = 7.047 < 9.161] w=0.704 to align_constraints # Constraint # added constraint: constraint((T0547)G274.CA, (T0547)G322.CA) [> 4.303 = 7.172 < 9.324] w=0.704 to align_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)A326.CB) [> 4.182 = 6.971 < 9.062] w=0.704 to align_constraints # Constraint # added constraint: constraint((T0547)K177.CB, (T0547)L224.CB) [> 3.896 = 6.493 < 8.441] w=0.695 to align_constraints # Constraint # added constraint: constraint((T0547)I180.CB, (T0547)T228.CB) [> 3.964 = 6.607 < 8.589] w=0.693 to align_constraints # Constraint # added constraint: constraint((T0547)G159.CA, (T0547)G205.CA) [> 4.033 = 6.721 < 8.737] w=0.691 to align_constraints # Constraint # added constraint: constraint((T0547)G274.CA, (T0547)F324.CB) [> 3.935 = 6.558 < 8.525] w=0.691 to align_constraints # Constraint # added constraint: constraint((T0547)G274.CA, (T0547)R323.CB) [> 3.919 = 6.532 < 8.492] w=0.691 to align_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)I319.CB) [> 3.919 = 6.532 < 8.491] w=0.691 to align_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)G322.CA) [> 4.060 = 6.766 < 8.796] w=0.691 to align_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)G273.CA) [> 4.341 = 7.235 < 9.405] w=0.691 to align_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)G181.CA) [> 3.891 = 6.485 < 8.431] w=0.681 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)T154.CB) [> 3.585 = 5.974 < 7.767] w=0.681 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)A247.CB) [> 3.100 = 5.167 < 6.718] w=0.681 to align_constraints # Constraint # added constraint: constraint((T0547)S208.CB, (T0547)I254.CB) [> 3.454 = 5.756 < 7.483] w=0.681 to align_constraints # Constraint # added constraint: constraint((T0547)E109.CB, (T0547)N132.CB) [> 3.444 = 5.740 < 7.462] w=0.680 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)L351.CB) [> 3.894 = 6.491 < 8.438] w=0.677 to align_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)F324.CB) [> 3.621 = 6.034 < 7.845] w=0.677 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)H410.CB) [> 4.098 = 6.829 < 8.878] w=0.677 to align_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)L408.CB) [> 4.085 = 6.809 < 8.852] w=0.677 to align_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)A81.CB) [> 3.994 = 6.657 < 8.654] w=0.667 to align_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)I317.CB) [> 3.919 = 6.532 < 8.492] w=0.667 to align_constraints # Constraint # added constraint: constraint((T0547)K267.CB, (T0547)D316.CB) [> 3.706 = 6.177 < 8.031] w=0.667 to align_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)A326.CB) [> 2.937 = 4.895 < 6.363] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)I412.CB) [> 3.555 = 5.924 < 7.702] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0547)A268.CB, (T0547)F318.CB) [> 3.714 = 6.191 < 8.048] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)E250.CB) [> 2.620 = 4.366 < 5.676] w=0.655 to align_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)N179.CB) [> 3.119 = 5.198 < 6.757] w=0.655 to align_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)L266.CB) [> 3.506 = 5.843 < 7.595] w=0.655 to align_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)E158.CB) [> 2.993 = 4.989 < 6.485] w=0.655 to align_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)F318.CB) [> 4.199 = 6.999 < 9.099] w=0.653 to align_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)V325.CB) [> 4.251 = 7.085 < 9.211] w=0.651 to align_constraints # Constraint # added constraint: constraint((T0547)G133.CA, (T0547)E158.CB) [> 3.564 = 5.940 < 7.722] w=0.651 to align_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)N404.CB) [> 3.957 = 6.595 < 8.574] w=0.651 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)T409.CB) [> 4.206 = 7.010 < 9.113] w=0.651 to align_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)G77.CA) [> 3.271 = 5.452 < 7.088] w=0.641 to align_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)V215.CB) [> 3.987 = 6.644 < 8.638] w=0.641 to align_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)F204.CB) [> 3.587 = 5.978 < 7.771] w=0.641 to align_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)I269.CB) [> 3.735 = 6.225 < 8.092] w=0.641 to align_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)Y83.CB) [> 4.194 = 6.990 < 9.088] w=0.640 to align_constraints # Constraint # added constraint: constraint((T0547)G181.CA, (T0547)M229.CB) [> 2.647 = 4.411 < 5.735] w=0.640 to align_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)P315.CB) [> 3.271 = 5.452 < 7.087] w=0.639 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)V331.CB) [> 4.548 = 7.580 < 9.854] w=0.637 to align_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)T409.CB) [> 3.314 = 5.523 < 7.179] w=0.637 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)I407.CB) [> 3.996 = 6.660 < 8.659] w=0.637 to align_constraints # Constraint # added constraint: constraint((T0547)I167.CB, (T0547)N221.CB) [> 2.794 = 4.657 < 6.055] w=0.628 to align_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)F318.CB) [> 3.994 = 6.656 < 8.653] w=0.627 to align_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)L351.CB) [> 3.825 = 6.375 < 8.287] w=0.624 to align_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)I407.CB) [> 4.362 = 7.269 < 9.450] w=0.624 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)I407.CB) [> 3.487 = 5.812 < 7.556] w=0.624 to align_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)R402.CB) [> 3.579 = 5.965 < 7.754] w=0.624 to align_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)H410.CB) [> 3.634 = 6.057 < 7.874] w=0.624 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)E320.CB) [> 4.606 = 7.677 < 9.980] w=0.624 to align_constraints # Constraint # added constraint: constraint((T0547)I167.CB, (T0547)L224.CB) [> 3.545 = 5.909 < 7.681] w=0.615 to align_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)I180.CB) [> 3.993 = 6.655 < 8.652] w=0.615 to align_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)I269.CB) [> 3.736 = 6.226 < 8.094] w=0.614 to align_constraints # Constraint # added constraint: constraint((T0547)P178.CB, (T0547)Q226.CB) [> 4.128 = 6.880 < 8.944] w=0.614 to align_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)A326.CB) [> 4.382 = 7.303 < 9.493] w=0.611 to align_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)T413.CB) [> 3.818 = 6.363 < 8.272] w=0.611 to align_constraints # Constraint # added constraint: constraint((T0547)S208.CB, (T0547)E250.CB) [> 4.016 = 6.693 < 8.701] w=0.602 to align_constraints # Constraint # added constraint: constraint((T0547)G181.CA, (T0547)A268.CB) [> 4.424 = 7.373 < 9.585] w=0.602 to align_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)I317.CB) [> 3.212 = 5.353 < 6.959] w=0.600 to align_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)E109.CB) [> 4.435 = 7.391 < 9.608] w=0.600 to align_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)N270.CB) [> 3.683 = 6.139 < 7.981] w=0.600 to align_constraints # Constraint # added constraint: constraint((T0547)L97.CB, (T0547)G107.CA) [> 4.319 = 7.198 < 9.358] w=0.599 to align_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)A263.CB) [> 3.884 = 6.474 < 8.416] w=0.599 to align_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)I333.CB) [> 3.895 = 6.492 < 8.440] w=0.598 to align_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)A405.CB) [> 3.950 = 6.584 < 8.559] w=0.598 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)R402.CB) [> 3.886 = 6.477 < 8.421] w=0.598 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)I350.CB) [> 4.426 = 7.376 < 9.589] w=0.598 to align_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)E115.CB) [> 3.879 = 6.466 < 8.405] w=0.598 to align_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)I412.CB) [> 3.440 = 5.733 < 7.453] w=0.598 to align_constraints # Constraint # added constraint: constraint((T0547)F232.CB, (T0547)G272.CA) [> 3.932 = 6.554 < 8.520] w=0.598 to align_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)A330.CB) [> 4.299 = 7.164 < 9.314] w=0.598 to align_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)L271.CB) [> 4.147 = 6.911 < 8.985] w=0.588 to align_constraints # Constraint # added constraint: constraint((T0547)I180.CB, (T0547)E225.CB) [> 3.650 = 6.084 < 7.909] w=0.587 to align_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)M229.CB) [> 4.402 = 7.336 < 9.537] w=0.587 to align_constraints # Constraint # added constraint: constraint((T0547)L218.CB, (T0547)F227.CB) [> 3.075 = 5.125 < 6.663] w=0.587 to align_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)A268.CB) [> 2.339 = 3.899 < 5.068] w=0.587 to align_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)L266.CB) [> 3.368 = 5.614 < 7.298] w=0.587 to align_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)K352.CB) [> 3.595 = 5.992 < 7.790] w=0.584 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)K353.CB) [> 2.823 = 4.705 < 6.116] w=0.584 to align_constraints # Constraint # added constraint: constraint((T0547)G133.CA, (T0547)F204.CB) [> 4.352 = 7.254 < 9.430] w=0.584 to align_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)L408.CB) [> 3.636 = 6.061 < 7.879] w=0.584 to align_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)G273.CA) [> 4.162 = 6.937 < 9.019] w=0.584 to align_constraints # Constraint # added constraint: constraint((T0547)L163.CB, (T0547)N221.CB) [> 3.994 = 6.656 < 8.653] w=0.575 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)N270.CB) [> 4.487 = 7.478 < 9.721] w=0.574 to align_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)M149.CB) [> 3.954 = 6.589 < 8.566] w=0.574 to align_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)I317.CB) [> 3.963 = 6.604 < 8.586] w=0.574 to align_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)F318.CB) [> 4.117 = 6.861 < 8.920] w=0.574 to align_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)K353.CB) [> 2.667 = 4.445 < 5.779] w=0.571 to align_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)K352.CB) [> 3.020 = 5.033 < 6.543] w=0.571 to align_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)I319.CB) [> 3.595 = 5.992 < 7.789] w=0.571 to align_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)E162.CB) [> 4.074 = 6.790 < 8.827] w=0.571 to align_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)A416.CB) [> 3.582 = 5.970 < 7.761] w=0.571 to align_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)I319.CB) [> 3.424 = 5.707 < 7.419] w=0.571 to align_constraints # Constraint # added constraint: constraint((T0547)H233.CB, (T0547)E320.CB) [> 4.174 = 6.957 < 9.044] w=0.571 to align_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)K267.CB) [> 3.913 = 6.522 < 8.478] w=0.560 to align_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)L118.CB) [> 3.556 = 5.927 < 7.705] w=0.558 to align_constraints # Constraint # added constraint: constraint((T0547)A327.CB, (T0547)T413.CB) [> 4.153 = 6.922 < 8.998] w=0.558 to align_constraints # Constraint # added constraint: constraint((T0547)V98.CB, (T0547)N123.CB) [> 3.757 = 6.262 < 8.141] w=0.558 to align_constraints # Constraint # added constraint: constraint((T0547)A170.CB, (T0547)L224.CB) [> 3.499 = 5.832 < 7.581] w=0.548 to align_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)L155.CB) [> 3.161 = 5.269 < 6.850] w=0.548 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)I153.CB) [> 3.162 = 5.271 < 6.852] w=0.548 to align_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)S208.CB) [> 3.516 = 5.860 < 7.618] w=0.548 to align_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)L139.CB) [> 3.333 = 5.555 < 7.221] w=0.546 to align_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)K352.CB) [> 3.490 = 5.816 < 7.561] w=0.545 to align_constraints # Constraint # added constraint: constraint((T0547)A268.CB, (T0547)P315.CB) [> 3.812 = 6.353 < 8.259] w=0.545 to align_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)G274.CA) [> 3.183 = 5.304 < 6.896] w=0.545 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)I129.CB) [> 4.260 = 7.099 < 9.229] w=0.544 to align_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)G274.CA) [> 4.200 = 7.000 < 9.100] w=0.544 to align_constraints # Constraint # added constraint: constraint((T0547)A247.CB, (T0547)L271.CB) [> 4.350 = 7.251 < 9.426] w=0.544 to align_constraints # Constraint # added constraint: constraint((T0547)I212.CB, (T0547)E257.CB) [> 3.821 = 6.368 < 8.278] w=0.544 to align_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)L258.CB) [> 4.245 = 7.075 < 9.197] w=0.535 to align_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)L218.CB) [> 4.443 = 7.404 < 9.626] w=0.535 to align_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)H151.CB) [> 3.793 = 6.321 < 8.218] w=0.535 to align_constraints # Constraint # added constraint: constraint((T0547)Y106.CB, (T0547)P128.CB) [> 4.351 = 7.251 < 9.427] w=0.534 to align_constraints # Constraint # added constraint: constraint((T0547)N179.CB, (T0547)F227.CB) [> 3.518 = 5.863 < 7.621] w=0.533 to align_constraints # Constraint # added constraint: constraint((T0547)M120.CB, (T0547)I129.CB) [> 4.493 = 7.489 < 9.735] w=0.533 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)T413.CB) [> 3.436 = 5.726 < 7.444] w=0.531 to align_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)V299.CB) [> 3.777 = 6.296 < 8.184] w=0.531 to align_constraints # Constraint # added constraint: constraint((T0547)A327.CB, (T0547)K415.CB) [> 2.592 = 4.319 < 5.615] w=0.531 to align_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)K415.CB) [> 2.727 = 4.545 < 5.908] w=0.531 to align_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)L419.CB) [> 3.569 = 5.949 < 7.734] w=0.531 to align_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)A296.CB) [> 2.620 = 4.367 < 5.678] w=0.531 to align_constraints # Constraint # added constraint: constraint((T0547)R183.CB, (T0547)I230.CB) [> 4.622 = 7.704 < 10.015] w=0.522 to align_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)I269.CB) [> 4.217 = 7.028 < 9.137] w=0.522 to align_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)G143.CA) [> 4.175 = 6.958 < 9.046] w=0.521 to align_constraints # Constraint # added constraint: constraint((T0547)N141.CB, (T0547)I169.CB) [> 3.458 = 5.763 < 7.493] w=0.521 to align_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)I382.CB) [> 3.694 = 6.156 < 8.003] w=0.518 to align_constraints # Constraint # added constraint: constraint((T0547)I212.CB, (T0547)M261.CB) [> 4.229 = 7.048 < 9.163] w=0.518 to align_constraints # Constraint # added constraint: constraint((T0547)G150.CA, (T0547)N179.CB) [> 4.020 = 6.700 < 8.711] w=0.518 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)K357.CB) [> 3.618 = 6.030 < 7.839] w=0.518 to align_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)F324.CB) [> 2.612 = 4.353 < 5.659] w=0.518 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)F93.CB) [> 4.465 = 7.441 < 9.673] w=0.518 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)G92.CA) [> 4.261 = 7.101 < 9.232] w=0.518 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)K414.CB) [> 2.212 = 3.687 < 4.793] w=0.518 to align_constraints # Constraint # added constraint: constraint((T0547)H233.CB, (T0547)G274.CA) [> 4.429 = 7.381 < 9.595] w=0.518 to align_constraints # Constraint # added constraint: constraint((T0547)V94.CB, (T0547)L118.CB) [> 3.761 = 6.269 < 8.149] w=0.518 to align_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)K415.CB) [> 3.578 = 5.964 < 7.753] w=0.518 to align_constraints # Constraint # added constraint: constraint((T0547)I153.CB, (T0547)N179.CB) [> 3.177 = 5.295 < 6.884] w=0.509 to align_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)H151.CB) [> 3.024 = 5.040 < 6.552] w=0.509 to align_constraints # Constraint # added constraint: constraint((T0547)K177.CB, (T0547)Q226.CB) [> 3.159 = 5.265 < 6.845] w=0.507 to align_constraints # Constraint # added constraint: constraint((T0547)S112.CB, (T0547)G133.CA) [> 4.317 = 7.194 < 9.353] w=0.507 to align_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)I169.CB) [> 3.277 = 5.462 < 7.101] w=0.506 to align_constraints # Constraint # added constraint: constraint((T0547)G235.CA, (T0547)G273.CA) [> 4.354 = 7.256 < 9.433] w=0.505 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)S208.CB) [> 4.205 = 7.009 < 9.112] w=0.505 to align_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)T409.CB) [> 4.049 = 6.748 < 8.773] w=0.505 to align_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)L408.CB) [> 4.530 = 7.549 < 9.814] w=0.505 to align_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)N328.CB) [> 3.496 = 5.827 < 7.575] w=0.505 to align_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)A327.CB) [> 2.731 = 4.552 < 5.917] w=0.505 to align_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)R323.CB) [> 4.309 = 7.182 < 9.337] w=0.505 to align_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)S321.CB) [> 3.357 = 5.596 < 7.275] w=0.505 to align_constraints # Constraint # added constraint: constraint((T0547)A327.CB, (T0547)K414.CB) [> 3.471 = 5.785 < 7.520] w=0.505 to align_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)G272.CA) [> 3.937 = 6.561 < 8.530] w=0.505 to align_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)L271.CB) [> 3.888 = 6.480 < 8.424] w=0.495 to align_constraints # Constraint # added constraint: constraint((T0547)G107.CA, (T0547)T130.CB) [> 4.526 = 7.543 < 9.806] w=0.494 to align_constraints # Constraint # added constraint: constraint((T0547)K177.CB, (T0547)L223.CB) [> 3.679 = 6.132 < 7.971] w=0.494 to align_constraints # Constraint # added constraint: constraint((T0547)K219.CB, (T0547)A263.CB) [> 3.954 = 6.590 < 8.567] w=0.493 to align_constraints # Constraint # added constraint: constraint((T0547)K267.CB, (T0547)P315.CB) [> 3.536 = 5.893 < 7.661] w=0.491 to align_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)G273.CA) [> 4.433 = 7.388 < 9.604] w=0.491 to align_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)I319.CB) [> 4.188 = 6.981 < 9.075] w=0.491 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)L351.CB) [> 4.107 = 6.845 < 8.899] w=0.491 to align_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)G101.CA) [> 3.989 = 6.649 < 8.644] w=0.482 to align_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)G252.CA) [> 4.450 = 7.416 < 9.641] w=0.482 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)S202.CB) [> 3.851 = 6.418 < 8.344] w=0.482 to align_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)Y106.CB) [> 3.742 = 6.237 < 8.108] w=0.479 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)Y106.CB) [> 3.029 = 5.049 < 6.563] w=0.479 to align_constraints # Constraint # added constraint: constraint((T0547)A81.CB, (T0547)G101.CA) [> 4.128 = 6.880 < 8.944] w=0.478 to align_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)Y106.CB) [> 3.032 = 5.053 < 6.569] w=0.478 to align_constraints # Constraint # added constraint: constraint((T0547)G235.CA, (T0547)G274.CA) [> 3.128 = 5.213 < 6.777] w=0.478 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)L418.CB) [> 3.819 = 6.366 < 8.275] w=0.478 to align_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)G274.CA) [> 4.072 = 6.787 < 8.823] w=0.478 to align_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)T228.CB) [> 3.690 = 6.149 < 7.994] w=0.478 to align_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)Y295.CB) [> 3.385 = 5.641 < 7.334] w=0.478 to align_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)D298.CB) [> 3.042 = 5.071 < 6.592] w=0.478 to align_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)V299.CB) [> 3.980 = 6.634 < 8.624] w=0.478 to align_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)R323.CB) [> 4.392 = 7.319 < 9.515] w=0.478 to align_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)F324.CB) [> 4.337 = 7.228 < 9.397] w=0.478 to align_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)I153.CB) [> 4.168 = 6.947 < 9.031] w=0.469 to align_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)T154.CB) [> 3.750 = 6.249 < 8.124] w=0.469 to align_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)H151.CB) [> 3.406 = 5.676 < 7.379] w=0.469 to align_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)T207.CB) [> 4.559 = 7.598 < 9.877] w=0.469 to align_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)E162.CB) [> 3.852 = 6.420 < 8.346] w=0.469 to align_constraints # Constraint # added constraint: constraint((T0547)E109.CB, (T0547)V131.CB) [> 4.141 = 6.902 < 8.973] w=0.467 to align_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)E250.CB) [> 4.010 = 6.684 < 8.689] w=0.467 to align_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)D298.CB) [> 3.222 = 5.371 < 6.982] w=0.467 to align_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)T154.CB) [> 3.486 = 5.810 < 7.553] w=0.465 to align_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)H410.CB) [> 3.544 = 5.907 < 7.679] w=0.465 to align_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)I417.CB) [> 4.029 = 6.714 < 8.729] w=0.465 to align_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)L418.CB) [> 4.064 = 6.774 < 8.806] w=0.465 to align_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)R323.CB) [> 3.291 = 5.485 < 7.131] w=0.465 to align_constraints # Constraint # added constraint: constraint((T0547)D136.CB, (T0547)E162.CB) [> 3.750 = 6.250 < 8.125] w=0.465 to align_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)I388.CB) [> 3.606 = 6.011 < 7.814] w=0.465 to align_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)R183.CB) [> 4.301 = 7.168 < 9.318] w=0.465 to align_constraints # Constraint # added constraint: constraint((T0547)G159.CA, (T0547)E210.CB) [> 4.299 = 7.166 < 9.315] w=0.465 to align_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)I153.CB) [> 3.911 = 6.518 < 8.473] w=0.456 to align_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)A296.CB) [> 3.155 = 5.259 < 6.837] w=0.454 to align_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)G143.CA) [> 4.107 = 6.844 < 8.898] w=0.453 to align_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)G274.CA) [> 3.239 = 5.399 < 7.018] w=0.452 to align_constraints # Constraint # added constraint: constraint((T0547)D383.CB, (T0547)V397.CB) [> 3.693 = 6.156 < 8.002] w=0.452 to align_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)I388.CB) [> 3.386 = 5.643 < 7.336] w=0.452 to align_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)F144.CB) [> 3.974 = 6.624 < 8.611] w=0.452 to align_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)L419.CB) [> 3.776 = 6.294 < 8.182] w=0.452 to align_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)A416.CB) [> 4.212 = 7.020 < 9.126] w=0.452 to align_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)F324.CB) [> 4.595 = 7.658 < 9.955] w=0.452 to align_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)L182.CB) [> 4.323 = 7.205 < 9.366] w=0.442 to align_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)A110.CB) [> 4.581 = 7.635 < 9.925] w=0.440 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)G322.CA) [> 2.480 = 4.133 < 5.373] w=0.438 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)R323.CB) [> 3.387 = 5.645 < 7.339] w=0.438 to align_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)A121.CB) [> 3.674 = 6.124 < 7.961] w=0.438 to align_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)R323.CB) [> 4.004 = 6.673 < 8.675] w=0.438 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)A334.CB) [> 4.353 = 7.255 < 9.432] w=0.438 to align_constraints # Constraint # added constraint: constraint((T0547)H233.CB, (T0547)L271.CB) [> 4.451 = 7.419 < 9.644] w=0.438 to align_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)A276.CB) [> 2.835 = 4.725 < 6.143] w=0.438 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)L411.CB) [> 2.895 = 4.826 < 6.273] w=0.438 to align_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)I140.CB) [> 3.531 = 5.886 < 7.651] w=0.438 to align_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)G205.CA) [> 4.201 = 7.001 < 9.102] w=0.438 to align_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)Y295.CB) [> 3.943 = 6.571 < 8.543] w=0.438 to align_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)G322.CA) [> 4.618 = 7.697 < 10.007] w=0.438 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)L418.CB) [> 4.403 = 7.339 < 9.540] w=0.438 to align_constraints # Constraint # added constraint: constraint((T0547)E109.CB, (T0547)G322.CA) [> 4.697 = 7.828 < 10.177] w=0.438 to align_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)I302.CB) [> 2.813 = 4.689 < 6.096] w=0.438 to align_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)T156.CB) [> 3.874 = 6.456 < 8.393] w=0.429 to align_constraints # Constraint # added constraint: constraint((T0547)G181.CA, (T0547)N270.CB) [> 4.447 = 7.412 < 9.636] w=0.429 to align_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)E294.CB) [> 3.481 = 5.802 < 7.543] w=0.428 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)L118.CB) [> 3.955 = 6.592 < 8.569] w=0.426 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)L234.CB) [> 4.157 = 6.929 < 9.008] w=0.426 to align_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)L275.CB) [> 3.835 = 6.392 < 8.310] w=0.425 to align_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)L385.CB) [> 3.913 = 6.521 < 8.477] w=0.425 to align_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)G322.CA) [> 4.526 = 7.543 < 9.805] w=0.425 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)I412.CB) [> 4.316 = 7.193 < 9.351] w=0.425 to align_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)K414.CB) [> 3.997 = 6.661 < 8.660] w=0.425 to align_constraints # Constraint # added constraint: constraint((T0547)D136.CB, (T0547)A165.CB) [> 3.959 = 6.599 < 8.579] w=0.425 to align_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)Q424.CB) [> 3.453 = 5.754 < 7.481] w=0.425 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)F318.CB) [> 4.234 = 7.057 < 9.173] w=0.425 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)N270.CB) [> 4.221 = 7.036 < 9.146] w=0.425 to align_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)V325.CB) [> 4.511 = 7.519 < 9.774] w=0.425 to align_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)K415.CB) [> 2.809 = 4.682 < 6.086] w=0.425 to align_constraints # Constraint # added constraint: constraint((T0547)L303.CB, (T0547)I317.CB) [> 3.454 = 5.757 < 7.484] w=0.425 to align_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)V299.CB) [> 3.502 = 5.837 < 7.588] w=0.425 to align_constraints # Constraint # added constraint: constraint((T0547)G107.CA, (T0547)A127.CB) [> 2.966 = 4.943 < 6.425] w=0.416 to align_constraints # Constraint # added constraint: constraint((T0547)N152.CB, (T0547)N179.CB) [> 3.628 = 6.047 < 7.861] w=0.416 to align_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)P178.CB) [> 3.697 = 6.161 < 8.009] w=0.414 to align_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)L292.CB) [> 3.061 = 5.102 < 6.632] w=0.414 to align_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)I317.CB) [> 3.761 = 6.269 < 8.149] w=0.412 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)K353.CB) [> 3.919 = 6.532 < 8.491] w=0.412 to align_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)D393.CB) [> 2.989 = 4.982 < 6.477] w=0.412 to align_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)I382.CB) [> 3.858 = 6.429 < 8.358] w=0.412 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)P356.CB) [> 3.656 = 6.093 < 7.920] w=0.412 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)A416.CB) [> 3.246 = 5.410 < 7.034] w=0.412 to align_constraints # Constraint # added constraint: constraint((T0547)E164.CB, (T0547)L217.CB) [> 4.202 = 7.003 < 9.103] w=0.412 to align_constraints # Constraint # added constraint: constraint((T0547)K171.CB, (T0547)L223.CB) [> 3.389 = 5.648 < 7.342] w=0.412 to align_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)T390.CB) [> 4.110 = 6.850 < 8.905] w=0.412 to align_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)S387.CB) [> 3.683 = 6.138 < 7.979] w=0.412 to align_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)L292.CB) [> 3.362 = 5.604 < 7.285] w=0.412 to align_constraints # Constraint # added constraint: constraint((T0547)L292.CB, (T0547)F324.CB) [> 3.816 = 6.360 < 8.267] w=0.412 to align_constraints # Constraint # added constraint: constraint((T0547)L108.CB, (T0547)A127.CB) [> 3.934 = 6.557 < 8.524] w=0.402 to align_constraints # Constraint # added constraint: constraint((T0547)I157.CB, (T0547)L218.CB) [> 4.480 = 7.466 < 9.706] w=0.402 to align_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)D316.CB) [> 3.765 = 6.275 < 8.157] w=0.401 to align_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)A119.CB) [> 3.976 = 6.627 < 8.616] w=0.401 to align_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)Y295.CB) [> 3.885 = 6.474 < 8.417] w=0.401 to align_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)L271.CB) [> 4.158 = 6.929 < 9.008] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)S321.CB) [> 4.398 = 7.331 < 9.530] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)Y295.CB) [> 4.129 = 6.882 < 8.947] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)L85.CB, (T0547)G111.CA) [> 4.393 = 7.321 < 9.518] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)A326.CB) [> 3.149 = 5.248 < 6.822] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)R323.CB) [> 4.072 = 6.787 < 8.823] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)F93.CB) [> 4.471 = 7.451 < 9.686] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)E158.CB) [> 4.283 = 7.138 < 9.280] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)A327.CB, (T0547)A416.CB) [> 3.633 = 6.055 < 7.871] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)L418.CB) [> 3.649 = 6.082 < 7.906] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)D422.CB) [> 3.605 = 6.008 < 7.811] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)Y63.CB, (T0547)G77.CA) [> 3.777 = 6.294 < 8.182] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)R293.CB) [> 3.097 = 5.161 < 6.710] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)T156.CB, (T0547)N270.CB) [> 4.362 = 7.269 < 9.450] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)L271.CB) [> 4.133 = 6.888 < 8.954] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)N249.CB, (T0547)I302.CB) [> 3.859 = 6.432 < 8.362] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)N216.CB, (T0547)M261.CB) [> 3.924 = 6.541 < 8.503] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)D298.CB) [> 3.853 = 6.422 < 8.348] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)L292.CB) [> 4.162 = 6.937 < 9.018] w=0.398 to align_constraints # Constraint # added constraint: constraint((T0547)L211.CB, (T0547)L258.CB) [> 4.061 = 6.768 < 8.798] w=0.389 to align_constraints # Constraint # added constraint: constraint((T0547)A170.CB, (T0547)L223.CB) [> 2.696 = 4.494 < 5.842] w=0.388 to align_constraints # Constraint # added constraint: constraint((T0547)F227.CB, (T0547)K267.CB) [> 3.671 = 6.119 < 7.955] w=0.386 to align_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)A276.CB) [> 2.688 = 4.481 < 5.825] w=0.385 to align_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)T390.CB) [> 3.361 = 5.601 < 7.281] w=0.385 to align_constraints # Constraint # added constraint: constraint((T0547)I382.CB, (T0547)D398.CB) [> 4.448 = 7.413 < 9.637] w=0.385 to align_constraints # Constraint # added constraint: constraint((T0547)Y279.CB, (T0547)I412.CB) [> 3.701 = 6.168 < 8.019] w=0.385 to align_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)G421.CA) [> 3.919 = 6.532 < 8.491] w=0.385 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)I417.CB) [> 4.127 = 6.879 < 8.942] w=0.385 to align_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)M261.CB) [> 3.403 = 5.672 < 7.373] w=0.385 to align_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)S321.CB) [> 4.616 = 7.693 < 10.000] w=0.385 to align_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)V299.CB) [> 4.211 = 7.019 < 9.124] w=0.385 to align_constraints # Constraint # added constraint: constraint((T0547)Y106.CB, (T0547)A127.CB) [> 4.024 = 6.706 < 8.718] w=0.375 to align_constraints # Constraint # added constraint: constraint((T0547)I167.CB, (T0547)L223.CB) [> 3.196 = 5.326 < 6.924] w=0.375 to align_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)L292.CB) [> 3.513 = 5.856 < 7.612] w=0.372 to align_constraints # Constraint # added constraint: constraint((T0547)L266.CB, (T0547)P315.CB) [> 3.855 = 6.425 < 8.353] w=0.372 to align_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)L411.CB) [> 3.981 = 6.636 < 8.626] w=0.372 to align_constraints # Constraint # added constraint: constraint((T0547)F340.CB, (T0547)I350.CB) [> 4.276 = 7.127 < 9.266] w=0.372 to align_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)L394.CB) [> 4.139 = 6.898 < 8.967] w=0.372 to align_constraints # Constraint # added constraint: constraint((T0547)A119.CB, (T0547)P128.CB) [> 4.014 = 6.691 < 8.698] w=0.372 to align_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)E320.CB) [> 4.577 = 7.629 < 9.918] w=0.372 to align_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)A276.CB) [> 3.295 = 5.491 < 7.138] w=0.372 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)T413.CB) [> 2.654 = 4.423 < 5.749] w=0.372 to align_constraints # Constraint # added constraint: constraint((T0547)E138.CB, (T0547)I169.CB) [> 3.822 = 6.371 < 8.282] w=0.372 to align_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)I306.CB) [> 3.490 = 5.817 < 7.562] w=0.372 to align_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)V300.CB) [> 4.183 = 6.972 < 9.064] w=0.372 to align_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)L97.CB) [> 4.402 = 7.336 < 9.537] w=0.363 to align_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)H231.CB) [> 4.296 = 7.160 < 9.309] w=0.363 to align_constraints # Constraint # added constraint: constraint((T0547)I153.CB, (T0547)G181.CA) [> 3.796 = 6.327 < 8.226] w=0.363 to align_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)A110.CB) [> 3.053 = 5.088 < 6.614] w=0.361 to align_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)N132.CB) [> 4.634 = 7.723 < 10.040] w=0.361 to align_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)D316.CB) [> 3.806 = 6.343 < 8.246] w=0.360 to align_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)I269.CB) [> 3.648 = 6.081 < 7.905] w=0.360 to align_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)G205.CA) [> 4.673 = 7.788 < 10.125] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)V325.CB) [> 4.329 = 7.215 < 9.379] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)V277.CB) [> 4.408 = 7.347 < 9.551] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)P315.CB) [> 4.255 = 7.091 < 9.219] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)E148.CB, (T0547)P176.CB) [> 4.177 = 6.962 < 9.051] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)H410.CB) [> 4.222 = 7.037 < 9.148] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)L85.CB, (T0547)L118.CB) [> 3.841 = 6.401 < 8.322] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)K415.CB) [> 2.967 = 4.944 < 6.428] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)K348.CB) [> 4.625 = 7.709 < 10.022] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)T409.CB) [> 3.960 = 6.600 < 8.580] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)D383.CB) [> 3.611 = 6.018 < 7.824] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)G126.CA, (T0547)H151.CB) [> 3.299 = 5.499 < 7.148] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)F392.CB) [> 3.893 = 6.489 < 8.435] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)D380.CB) [> 3.935 = 6.558 < 8.526] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)P128.CB) [> 4.202 = 7.003 < 9.104] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)E320.CB) [> 4.432 = 7.386 < 9.602] w=0.359 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)S208.CB) [> 3.572 = 5.954 < 7.740] w=0.349 to align_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)L234.CB) [> 3.940 = 6.567 < 8.538] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)K414.CB) [> 4.434 = 7.389 < 9.606] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)K415.CB) [> 3.047 = 5.079 < 6.602] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)K203.CB) [> 3.165 = 5.274 < 6.857] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)I382.CB, (T0547)L399.CB) [> 3.346 = 5.577 < 7.250] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)T154.CB) [> 3.989 = 6.648 < 8.642] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)L399.CB) [> 3.577 = 5.962 < 7.751] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)L408.CB) [> 3.718 = 6.196 < 8.055] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)K414.CB) [> 3.890 = 6.483 < 8.428] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)G322.CA, (T0547)K415.CB) [> 3.739 = 6.232 < 8.101] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)K414.CB) [> 2.467 = 4.111 < 5.344] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)A327.CB, (T0547)I412.CB) [> 3.168 = 5.279 < 6.863] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)S387.CB) [> 4.137 = 6.896 < 8.964] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)D383.CB) [> 4.036 = 6.727 < 8.745] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)D383.CB) [> 3.625 = 6.042 < 7.854] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)E386.CB) [> 3.743 = 6.239 < 8.110] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)N425.CB) [> 3.485 = 5.809 < 7.551] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)G421.CA) [> 3.715 = 6.191 < 8.049] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)K357.CB) [> 3.752 = 6.254 < 8.130] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)I417.CB) [> 4.096 = 6.826 < 8.874] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)E320.CB) [> 4.258 = 7.097 < 9.227] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)L303.CB) [> 3.785 = 6.308 < 8.200] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)G133.CA, (T0547)R183.CB) [> 4.547 = 7.578 < 9.852] w=0.345 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)E115.CB) [> 3.944 = 6.574 < 8.546] w=0.333 to align_constraints # Constraint # added constraint: constraint((T0547)Y279.CB, (T0547)Y366.CB) [> 3.294 = 5.491 < 7.138] w=0.332 to align_constraints # Constraint # added constraint: constraint((T0547)Y279.CB, (T0547)S368.CB) [> 4.186 = 6.976 < 9.069] w=0.332 to align_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)L411.CB) [> 3.164 = 5.273 < 6.855] w=0.332 to align_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)I407.CB) [> 4.240 = 7.066 < 9.186] w=0.332 to align_constraints # Constraint # added constraint: constraint((T0547)D383.CB, (T0547)L394.CB) [> 3.707 = 6.178 < 8.031] w=0.332 to align_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)T413.CB) [> 3.390 = 5.650 < 7.345] w=0.332 to align_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)K414.CB) [> 4.115 = 6.859 < 8.916] w=0.332 to align_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)G159.CA) [> 4.414 = 7.357 < 9.565] w=0.332 to align_constraints # Constraint # added constraint: constraint((T0547)I388.CB, (T0547)N425.CB) [> 3.442 = 5.737 < 7.458] w=0.332 to align_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)I417.CB) [> 3.594 = 5.991 < 7.788] w=0.332 to align_constraints # Constraint # added constraint: constraint((T0547)F227.CB, (T0547)N265.CB) [> 4.221 = 7.035 < 9.146] w=0.323 to align_constraints # Constraint # added constraint: constraint((T0547)R137.CB, (T0547)A165.CB) [> 3.233 = 5.388 < 7.004] w=0.323 to align_constraints # Constraint # added constraint: constraint((T0547)G133.CA, (T0547)L155.CB) [> 4.049 = 6.749 < 8.774] w=0.323 to align_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)N270.CB) [> 3.722 = 6.203 < 8.065] w=0.320 to align_constraints # Constraint # added constraint: constraint((T0547)G181.CA, (T0547)Q226.CB) [> 3.832 = 6.386 < 8.302] w=0.320 to align_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)A276.CB) [> 4.096 = 6.827 < 8.876] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)A268.CB) [> 4.526 = 7.544 < 9.807] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)I382.CB) [> 3.512 = 5.853 < 7.609] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)T413.CB) [> 4.099 = 6.832 < 8.881] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)Y279.CB, (T0547)L365.CB) [> 4.156 = 6.926 < 9.004] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)L49.CB) [> 3.787 = 6.312 < 8.205] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)L420.CB) [> 3.448 = 5.746 < 7.470] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)A146.CB) [> 3.907 = 6.512 < 8.465] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)H384.CB) [> 3.912 = 6.520 < 8.477] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)G421.CA) [> 3.912 = 6.521 < 8.477] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)E386.CB) [> 4.150 = 6.917 < 8.992] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)K246.CB) [> 4.561 = 7.601 < 9.882] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)V331.CB) [> 4.097 = 6.828 < 8.876] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)E320.CB) [> 4.617 = 7.695 < 10.003] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)L211.CB, (T0547)E257.CB) [> 3.876 = 6.459 < 8.397] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)A81.CB, (T0547)V325.CB) [> 4.609 = 7.682 < 9.987] w=0.319 to align_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)A268.CB) [> 4.431 = 7.386 < 9.601] w=0.308 to align_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)I169.CB) [> 3.174 = 5.290 < 6.878] w=0.308 to align_constraints # Constraint # added constraint: constraint((T0547)V98.CB, (T0547)E125.CB) [> 4.401 = 7.335 < 9.536] w=0.305 to align_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)A427.CB) [> 3.855 = 6.425 < 8.352] w=0.305 to align_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)H410.CB) [> 4.120 = 6.866 < 8.926] w=0.305 to align_constraints # Constraint # added constraint: constraint((T0547)I166.CB, (T0547)N221.CB) [> 4.463 = 7.439 < 9.671] w=0.305 to align_constraints # Constraint # added constraint: constraint((T0547)A127.CB, (T0547)N152.CB) [> 3.403 = 5.672 < 7.374] w=0.305 to align_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)L429.CB) [> 4.035 = 6.726 < 8.744] w=0.305 to align_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)L399.CB) [> 3.961 = 6.601 < 8.581] w=0.305 to align_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)I412.CB) [> 3.890 = 6.483 < 8.428] w=0.305 to align_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)L430.CB) [> 3.862 = 6.437 < 8.368] w=0.305 to align_constraints # Constraint # added constraint: constraint((T0547)D136.CB, (T0547)L155.CB) [> 4.387 = 7.311 < 9.505] w=0.305 to align_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)L411.CB) [> 4.484 = 7.474 < 9.716] w=0.305 to align_constraints # Constraint # added constraint: constraint((T0547)G205.CA, (T0547)F232.CB) [> 4.611 = 7.685 < 9.991] w=0.296 to align_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)G235.CA) [> 4.085 = 6.809 < 8.852] w=0.295 to align_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)I166.CB) [> 3.543 = 5.905 < 7.677] w=0.295 to align_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)F79.CB) [> 4.018 = 6.696 < 8.705] w=0.292 to align_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)L385.CB) [> 3.539 = 5.899 < 7.669] w=0.292 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)A431.CB) [> 3.884 = 6.474 < 8.416] w=0.292 to align_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)L303.CB) [> 4.271 = 7.118 < 9.253] w=0.292 to align_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)I317.CB) [> 4.010 = 6.684 < 8.689] w=0.292 to align_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)I417.CB) [> 3.458 = 5.764 < 7.493] w=0.292 to align_constraints # Constraint # added constraint: constraint((T0547)M120.CB, (T0547)A147.CB) [> 3.509 = 5.848 < 7.603] w=0.292 to align_constraints # Constraint # added constraint: constraint((T0547)I145.CB, (T0547)P178.CB) [> 3.469 = 5.782 < 7.517] w=0.292 to align_constraints # Constraint # added constraint: constraint((T0547)A146.CB, (T0547)L155.CB) [> 3.689 = 6.148 < 7.993] w=0.292 to align_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)F392.CB) [> 3.913 = 6.521 < 8.477] w=0.292 to align_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)H384.CB) [> 4.018 = 6.697 < 8.707] w=0.292 to align_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)A214.CB) [> 4.557 = 7.596 < 9.874] w=0.292 to align_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)I333.CB) [> 4.008 = 6.680 < 8.684] w=0.292 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)K203.CB) [> 4.223 = 7.039 < 9.151] w=0.283 to align_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)P178.CB) [> 4.009 = 6.682 < 8.687] w=0.283 to align_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)A170.CB) [> 3.519 = 5.866 < 7.626] w=0.282 to align_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)N80.CB) [> 3.900 = 6.501 < 8.451] w=0.280 to align_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)S112.CB) [> 4.593 = 7.654 < 9.950] w=0.280 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)A327.CB) [> 4.436 = 7.394 < 9.612] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)I200.CB) [> 3.756 = 6.260 < 8.138] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)F318.CB) [> 4.456 = 7.426 < 9.654] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)I382.CB) [> 3.522 = 5.870 < 7.631] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)D393.CB) [> 3.337 = 5.561 < 7.229] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)A110.CB) [> 4.476 = 7.461 < 9.699] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)G235.CA, (T0547)L244.CB) [> 4.582 = 7.636 < 9.927] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)L155.CB) [> 3.756 = 6.260 < 8.138] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)L108.CB, (T0547)G126.CA) [> 4.140 = 6.901 < 8.971] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)M229.CB) [> 4.021 = 6.702 < 8.713] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)K286.CB) [> 3.746 = 6.243 < 8.116] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)L399.CB) [> 3.640 = 6.066 < 7.886] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)K286.CB, (T0547)Y295.CB) [> 3.642 = 6.070 < 7.891] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)L349.CB) [> 3.650 = 6.084 < 7.909] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)I153.CB, (T0547)T228.CB) [> 3.713 = 6.189 < 8.045] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)L399.CB) [> 4.319 = 7.198 < 9.358] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)Y90.CB) [> 4.437 = 7.396 < 9.614] w=0.279 to align_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)A146.CB) [> 3.521 = 5.869 < 7.630] w=0.267 to align_constraints # Constraint # added constraint: constraint((T0547)T156.CB, (T0547)M229.CB) [> 4.550 = 7.583 < 9.858] w=0.266 to align_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)A431.CB) [> 4.265 = 7.109 < 9.242] w=0.266 to align_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)L419.CB) [> 3.942 = 6.570 < 8.541] w=0.266 to align_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)H384.CB) [> 3.813 = 6.355 < 8.262] w=0.266 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)G181.CA) [> 4.478 = 7.463 < 9.702] w=0.266 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)I412.CB) [> 4.276 = 7.127 < 9.265] w=0.266 to align_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)L389.CB) [> 3.818 = 6.364 < 8.273] w=0.266 to align_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)I388.CB) [> 3.380 = 5.633 < 7.323] w=0.266 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)L358.CB) [> 3.690 = 6.150 < 7.995] w=0.266 to align_constraints # Constraint # added constraint: constraint((T0547)I180.CB, (T0547)M229.CB) [> 4.494 = 7.490 < 9.736] w=0.266 to align_constraints # Constraint # added constraint: constraint((T0547)I153.CB, (T0547)I180.CB) [> 3.994 = 6.657 < 8.654] w=0.256 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)G199.CA) [> 3.640 = 6.067 < 7.887] w=0.255 to align_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)A165.CB) [> 3.803 = 6.339 < 8.240] w=0.254 to align_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)T228.CB) [> 4.448 = 7.413 < 9.637] w=0.254 to align_constraints # Constraint # added constraint: constraint((T0547)V299.CB, (T0547)I317.CB) [> 3.865 = 6.441 < 8.373] w=0.252 to align_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)A247.CB) [> 3.831 = 6.384 < 8.300] w=0.252 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)P356.CB) [> 4.131 = 6.885 < 8.950] w=0.252 to align_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)H379.CB) [> 3.665 = 6.108 < 7.941] w=0.252 to align_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)F392.CB) [> 2.996 = 4.993 < 6.491] w=0.252 to align_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)S321.CB) [> 4.336 = 7.226 < 9.394] w=0.252 to align_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)V325.CB) [> 4.400 = 7.334 < 9.534] w=0.252 to align_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)P243.CB) [> 3.997 = 6.662 < 8.661] w=0.252 to align_constraints # Constraint # added constraint: constraint((T0547)K267.CB, (T0547)E314.CB) [> 3.924 = 6.541 < 8.503] w=0.252 to align_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)L408.CB) [> 3.463 = 5.772 < 7.503] w=0.252 to align_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)Q400.CB) [> 3.795 = 6.325 < 8.223] w=0.252 to align_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)K415.CB) [> 4.360 = 7.267 < 9.446] w=0.252 to align_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)V299.CB) [> 4.208 = 7.014 < 9.118] w=0.252 to align_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)N152.CB) [> 3.666 = 6.110 < 7.944] w=0.243 to align_constraints # Constraint # added constraint: constraint((T0547)T156.CB, (T0547)F204.CB) [> 4.408 = 7.346 < 9.550] w=0.243 to align_constraints # Constraint # added constraint: constraint((T0547)L85.CB, (T0547)L97.CB) [> 4.285 = 7.142 < 9.285] w=0.242 to align_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)F318.CB) [> 3.820 = 6.366 < 8.276] w=0.242 to align_constraints # Constraint # added constraint: constraint((T0547)G107.CA, (T0547)G126.CA) [> 3.422 = 5.703 < 7.413] w=0.240 to align_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)G199.CA) [> 3.532 = 5.886 < 7.652] w=0.240 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)Q433.CB) [> 4.066 = 6.777 < 8.811] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)Q433.CB) [> 3.480 = 5.800 < 7.540] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)I432.CB) [> 3.258 = 5.430 < 7.060] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)Q433.CB) [> 3.906 = 6.511 < 8.464] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)I432.CB) [> 3.760 = 6.267 < 8.148] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)L49.CB) [> 3.926 = 6.543 < 8.506] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)V325.CB, (T0547)K415.CB) [> 4.502 = 7.503 < 9.754] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)D434.CB, (T0547)F444.CB) [> 3.328 = 5.547 < 7.212] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)F444.CB) [> 3.697 = 6.162 < 8.011] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)I200.CB) [> 3.501 = 5.835 < 7.585] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)Y122.CB) [> 4.675 = 7.791 < 10.128] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)L108.CB, (T0547)Y122.CB) [> 4.541 = 7.568 < 9.839] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)Y106.CB, (T0547)V325.CB) [> 4.714 = 7.856 < 10.213] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)G159.CA, (T0547)R183.CB) [> 4.645 = 7.741 < 10.064] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)F204.CB) [> 4.194 = 6.990 < 9.087] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)S112.CB, (T0547)V131.CB) [> 4.055 = 6.758 < 8.786] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)Q89.CB) [> 4.067 = 6.778 < 8.812] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)I382.CB, (T0547)F392.CB) [> 4.157 = 6.928 < 9.007] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)I382.CB, (T0547)L391.CB) [> 3.236 = 5.393 < 7.011] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)L391.CB) [> 4.132 = 6.886 < 8.952] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)L155.CB) [> 4.308 = 7.181 < 9.335] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)G133.CA, (T0547)E162.CB) [> 4.140 = 6.900 < 8.970] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)N179.CB, (T0547)M229.CB) [> 4.625 = 7.708 < 10.020] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)G421.CA) [> 3.479 = 5.798 < 7.538] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)H233.CB) [> 4.487 = 7.478 < 9.722] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)I269.CB) [> 4.388 = 7.314 < 9.508] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)I302.CB) [> 4.111 = 6.852 < 8.907] w=0.239 to align_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)I153.CB) [> 3.933 = 6.555 < 8.522] w=0.230 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)I317.CB) [> 3.467 = 5.778 < 7.511] w=0.228 to align_constraints # Constraint # added constraint: constraint((T0547)A81.CB, (T0547)I317.CB) [> 4.339 = 7.232 < 9.401] w=0.228 to align_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)G143.CA) [> 4.101 = 6.835 < 8.886] w=0.228 to align_constraints # Constraint # added constraint: constraint((T0547)S280.CB, (T0547)Y366.CB) [> 3.420 = 5.699 < 7.409] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)K246.CB) [> 3.510 = 5.850 < 7.605] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)S445.CB) [> 3.596 = 5.994 < 7.792] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)E435.CB) [> 3.625 = 6.042 < 7.854] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)D434.CB) [> 3.546 = 5.910 < 7.683] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)R137.CB) [> 4.268 = 7.113 < 9.246] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)F444.CB) [> 4.196 = 6.993 < 9.090] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)Q448.CB) [> 2.549 = 4.249 < 5.523] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)N443.CB) [> 3.949 = 6.581 < 8.555] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)A326.CB) [> 4.520 = 7.533 < 9.793] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)Q226.CB, (T0547)A263.CB) [> 3.802 = 6.336 < 8.237] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)L248.CB) [> 4.490 = 7.483 < 9.727] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)A110.CB, (T0547)P128.CB) [> 3.955 = 6.591 < 8.568] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)E109.CB, (T0547)P128.CB) [> 4.429 = 7.382 < 9.596] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)G181.CA, (T0547)L266.CB) [> 4.509 = 7.515 < 9.770] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)G395.CA) [> 3.955 = 6.592 < 8.570] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)D422.CB) [> 4.200 = 7.000 < 9.099] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)L420.CB) [> 3.718 = 6.197 < 8.056] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)F340.CB, (T0547)L349.CB) [> 4.417 = 7.361 < 9.570] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)D393.CB) [> 3.746 = 6.244 < 8.117] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)S112.CB, (T0547)N132.CB) [> 3.815 = 6.358 < 8.265] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)A146.CB) [> 3.895 = 6.492 < 8.439] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)G322.CA) [> 4.575 = 7.625 < 9.912] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)I319.CB) [> 4.571 = 7.619 < 9.905] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)R185.CB) [> 4.512 = 7.519 < 9.775] w=0.216 to align_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)D316.CB) [> 4.063 = 6.772 < 8.804] w=0.215 to align_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)D312.CB) [> 3.710 = 6.183 < 8.037] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)I432.CB, (T0547)N443.CB) [> 4.242 = 7.071 < 9.192] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)F447.CB) [> 3.971 = 6.619 < 8.605] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)E435.CB) [> 3.560 = 5.934 < 7.714] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)E278.CB) [> 4.530 = 7.550 < 9.816] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)K203.CB, (T0547)H233.CB) [> 4.406 = 7.343 < 9.546] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)L85.CB, (T0547)G322.CA) [> 4.582 = 7.637 < 9.928] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)G111.CA, (T0547)T130.CB) [> 3.424 = 5.707 < 7.419] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)T156.CB) [> 4.150 = 6.916 < 8.991] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)L155.CB) [> 4.508 = 7.513 < 9.767] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)Q433.CB) [> 3.574 = 5.957 < 7.744] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)F392.CB) [> 4.130 = 6.883 < 8.948] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)I538.CB, (T0547)V547.CB) [> 3.769 = 6.281 < 8.166] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)F392.CB) [> 3.907 = 6.512 < 8.465] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)L420.CB) [> 3.660 = 6.099 < 7.929] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)K415.CB) [> 3.789 = 6.315 < 8.209] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)A416.CB) [> 3.131 = 5.219 < 6.785] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)A416.CB) [> 4.092 = 6.820 < 8.866] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)G133.CA, (T0547)I157.CB) [> 4.037 = 6.728 < 8.746] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)L418.CB) [> 4.187 = 6.978 < 9.071] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)A110.CB, (T0547)H151.CB) [> 4.594 = 7.657 < 9.953] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)A81.CB, (T0547)E320.CB) [> 4.594 = 7.656 < 9.953] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)F51.CB) [> 2.889 = 4.814 < 6.259] w=0.212 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)N152.CB) [> 3.238 = 5.397 < 7.017] w=0.203 to align_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)L155.CB) [> 4.464 = 7.441 < 9.673] w=0.203 to align_constraints # Constraint # added constraint: constraint((T0547)M120.CB, (T0547)H151.CB) [> 3.991 = 6.651 < 8.646] w=0.201 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)F447.CB) [> 3.910 = 6.517 < 8.472] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)F447.CB) [> 3.039 = 5.066 < 6.585] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)I432.CB, (T0547)S445.CB) [> 2.871 = 4.784 < 6.219] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)K76.CB) [> 3.659 = 6.098 < 7.928] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)D136.CB) [> 4.466 = 7.444 < 9.677] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)G143.CA, (T0547)F174.CB) [> 4.246 = 7.077 < 9.200] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)G181.CA) [> 4.461 = 7.435 < 9.665] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)N284.CB) [> 3.841 = 6.402 < 8.323] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)F444.CB) [> 3.562 = 5.936 < 7.717] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)V436.CB) [> 3.171 = 5.284 < 6.870] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)A127.CB, (T0547)H151.CB) [> 4.384 = 7.307 < 9.499] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)L420.CB) [> 4.387 = 7.312 < 9.505] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)R402.CB) [> 3.470 = 5.784 < 7.519] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)L211.CB) [> 4.640 = 7.733 < 10.053] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)E109.CB, (T0547)G272.CA) [> 4.580 = 7.634 < 9.924] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)P128.CB) [> 3.872 = 6.453 < 8.389] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)I157.CB, (T0547)L206.CB) [> 4.474 = 7.457 < 9.694] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)K246.CB) [> 3.870 = 6.449 < 8.384] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)N141.CB, (T0547)F174.CB) [> 4.109 = 6.848 < 8.903] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)L411.CB) [> 4.327 = 7.212 < 9.375] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)G235.CA) [> 3.329 = 5.548 < 7.212] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)L394.CB) [> 3.491 = 5.818 < 7.563] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)I145.CB, (T0547)A170.CB) [> 3.280 = 5.467 < 7.107] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)K414.CB) [> 2.866 = 4.777 < 6.210] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)L411.CB) [> 4.229 = 7.049 < 9.163] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)L430.CB) [> 3.386 = 5.644 < 7.337] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)S112.CB, (T0547)L139.CB) [> 4.079 = 6.798 < 8.838] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)I306.CB) [> 3.141 = 5.235 < 6.805] w=0.199 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)G111.CA) [> 4.481 = 7.468 < 9.708] w=0.187 to align_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)G235.CA) [> 3.121 = 5.201 < 6.761] w=0.187 to align_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)Y396.CB) [> 4.262 = 7.104 < 9.235] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)K353.CB) [> 4.357 = 7.262 < 9.441] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)Y396.CB) [> 4.483 = 7.472 < 9.714] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)A416.CB) [> 4.645 = 7.742 < 10.065] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)F447.CB) [> 3.826 = 6.377 < 8.290] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)L441.CB) [> 3.781 = 6.302 < 8.193] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)T409.CB) [> 4.516 = 7.527 < 9.786] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)T256.CB, (T0547)D312.CB) [> 3.817 = 6.361 < 8.269] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)P243.CB) [> 3.536 = 5.894 < 7.662] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)I306.CB) [> 3.887 = 6.479 < 8.422] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)E115.CB) [> 4.688 = 7.813 < 10.156] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)F318.CB) [> 4.577 = 7.629 < 9.918] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)A276.CB) [> 3.326 = 5.544 < 7.207] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)Q437.CB) [> 2.987 = 4.979 < 6.473] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)L430.CB) [> 3.379 = 5.631 < 7.321] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)A431.CB) [> 3.377 = 5.628 < 7.316] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)L430.CB) [> 4.202 = 7.004 < 9.105] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)T409.CB) [> 4.001 = 6.669 < 8.669] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)L430.CB) [> 2.861 = 4.768 < 6.199] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)A405.CB) [> 3.782 = 6.304 < 8.195] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)G421.CA) [> 3.868 = 6.446 < 8.380] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)T409.CB) [> 3.865 = 6.441 < 8.374] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)I153.CB, (T0547)A268.CB) [> 4.234 = 7.056 < 9.173] w=0.186 to align_constraints # Constraint # added constraint: constraint((T0547)Y106.CB, (T0547)G126.CA) [> 4.372 = 7.287 < 9.474] w=0.175 to align_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)D316.CB) [> 4.630 = 7.716 < 10.031] w=0.174 to align_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)P315.CB) [> 3.523 = 5.871 < 7.632] w=0.174 to align_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)P315.CB) [> 3.687 = 6.145 < 7.988] w=0.174 to align_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)D316.CB) [> 4.544 = 7.573 < 9.844] w=0.174 to align_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)Y396.CB) [> 4.169 = 6.948 < 9.033] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)A427.CB) [> 3.274 = 5.456 < 7.093] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)L391.CB) [> 3.828 = 6.379 < 8.293] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)I540.CB) [> 3.444 = 5.740 < 7.462] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)S539.CB) [> 3.360 = 5.600 < 7.280] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)I538.CB) [> 3.745 = 6.241 < 8.114] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)I538.CB) [> 3.692 = 6.153 < 7.999] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)I432.CB) [> 3.718 = 6.197 < 8.056] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)N443.CB) [> 4.073 = 6.789 < 8.826] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)V299.CB, (T0547)I319.CB) [> 4.512 = 7.521 < 9.777] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)S197.CB) [> 3.752 = 6.254 < 8.130] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)G198.CA) [> 3.306 = 5.510 < 7.163] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)L234.CB) [> 3.640 = 6.066 < 7.886] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)F232.CB, (T0547)L248.CB) [> 4.432 = 7.387 < 9.604] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)S381.CB) [> 3.916 = 6.527 < 8.485] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)L218.CB, (T0547)A263.CB) [> 4.123 = 6.872 < 8.934] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)A276.CB) [> 4.250 = 7.084 < 9.209] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)K203.CB) [> 3.144 = 5.240 < 6.812] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)L275.CB) [> 2.863 = 4.772 < 6.203] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)N328.CB) [> 4.638 = 7.730 < 10.050] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)H384.CB) [> 3.680 = 6.133 < 7.972] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)E115.CB, (T0547)V131.CB) [> 4.478 = 7.464 < 9.703] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)V277.CB) [> 3.846 = 6.411 < 8.334] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)P426.CB) [> 3.933 = 6.555 < 8.521] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)D383.CB) [> 3.469 = 5.781 < 7.515] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)D380.CB) [> 4.200 = 7.000 < 9.100] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)D380.CB) [> 2.942 = 4.903 < 6.374] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)Y377.CB) [> 3.550 = 5.917 < 7.693] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)S112.CB, (T0547)I140.CB) [> 4.045 = 6.742 < 8.765] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)K415.CB) [> 3.907 = 6.512 < 8.465] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)L419.CB) [> 4.466 = 7.444 < 9.677] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)L389.CB, (T0547)N425.CB) [> 3.527 = 5.879 < 7.642] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)K414.CB) [> 3.639 = 6.064 < 7.884] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)T413.CB) [> 3.751 = 6.251 < 8.127] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)L429.CB) [> 4.093 = 6.822 < 8.868] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)D380.CB) [> 3.653 = 6.088 < 7.914] w=0.173 to align_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)N265.CB) [> 3.893 = 6.488 < 8.434] w=0.162 to align_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)K283.CB) [> 4.018 = 6.697 < 8.706] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)S445.CB) [> 4.608 = 7.680 < 9.983] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)L391.CB) [> 3.762 = 6.270 < 8.151] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)K357.CB) [> 4.546 = 7.577 < 9.851] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)E37.CB, (T0547)S372.CB) [> 3.442 = 5.737 < 7.458] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)A431.CB) [> 3.435 = 5.725 < 7.442] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)S381.CB) [> 3.112 = 5.187 < 6.743] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)I382.CB) [> 3.123 = 5.204 < 6.766] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)F232.CB, (T0547)I269.CB) [> 4.572 = 7.621 < 9.907] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)A326.CB) [> 4.614 = 7.690 < 9.997] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)I238.CB) [> 3.613 = 6.022 < 7.829] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)L303.CB, (T0547)E314.CB) [> 3.837 = 6.395 < 8.314] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)K304.CB, (T0547)E314.CB) [> 3.527 = 5.878 < 7.641] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)L234.CB) [> 3.754 = 6.256 < 8.133] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)Y43.CB) [> 3.585 = 5.975 < 7.767] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)A431.CB) [> 3.944 = 6.573 < 8.545] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)K414.CB) [> 4.610 = 7.684 < 9.989] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)G274.CA, (T0547)I319.CB) [> 4.186 = 6.977 < 9.070] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)V184.CB) [> 4.738 = 7.897 < 10.266] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)G272.CA) [> 4.686 = 7.810 < 10.153] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)A114.CB) [> 4.597 = 7.661 < 9.960] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)G199.CA) [> 3.677 = 6.128 < 7.966] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)G198.CA, (T0547)G235.CA) [> 4.129 = 6.881 < 8.945] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)D428.CB) [> 3.370 = 5.617 < 7.302] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)L385.CB, (T0547)A427.CB) [> 4.325 = 7.209 < 9.372] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)L211.CB, (T0547)I230.CB) [> 4.512 = 7.520 < 9.776] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)P178.CB) [> 4.155 = 6.926 < 9.004] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)R288.CB) [> 3.719 = 6.198 < 8.058] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)L411.CB) [> 4.152 = 6.919 < 8.995] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)L389.CB, (T0547)P426.CB) [> 3.519 = 5.865 < 7.624] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)A170.CB) [> 3.712 = 6.186 < 8.042] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)L419.CB) [> 4.285 = 7.142 < 9.285] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)G143.CA, (T0547)A170.CB) [> 4.041 = 6.736 < 8.756] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)A307.CB, (T0547)I317.CB) [> 3.643 = 6.071 < 7.893] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)A307.CB) [> 4.090 = 6.817 < 8.862] w=0.159 to align_constraints # Constraint # added constraint: constraint((T0547)L117.CB, (T0547)A147.CB) [> 3.906 = 6.510 < 8.463] w=0.147 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)S539.CB) [> 3.342 = 5.570 < 7.241] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)A431.CB) [> 4.149 = 6.915 < 8.990] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)I432.CB) [> 3.919 = 6.532 < 8.491] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)L430.CB) [> 4.201 = 7.002 < 9.103] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)D428.CB) [> 4.136 = 6.894 < 8.962] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)L408.CB) [> 4.115 = 6.858 < 8.916] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)I31.CB) [> 3.750 = 6.250 < 8.125] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)I333.CB) [> 4.097 = 6.829 < 8.878] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)V442.CB) [> 3.929 = 6.549 < 8.514] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)Q448.CB) [> 3.376 = 5.627 < 7.316] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)I432.CB, (T0547)F444.CB) [> 3.100 = 5.166 < 6.716] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)I540.CB) [> 4.041 = 6.735 < 8.756] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)I537.CB) [> 4.176 = 6.961 < 9.049] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)I537.CB) [> 2.969 = 4.948 < 6.432] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)I537.CB) [> 3.995 = 6.659 < 8.657] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)L266.CB) [> 4.530 = 7.550 < 9.815] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)L275.CB) [> 4.348 = 7.247 < 9.422] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)L351.CB) [> 3.458 = 5.763 < 7.491] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)H233.CB) [> 4.501 = 7.501 < 9.751] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)L303.CB) [> 4.260 = 7.100 < 9.230] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)A427.CB) [> 4.082 = 6.803 < 8.844] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)L258.CB) [> 3.183 = 5.306 < 6.897] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)R259.CB) [> 4.175 = 6.958 < 9.046] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)I382.CB, (T0547)V397.CB) [> 3.330 = 5.550 < 7.215] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)P335.CB) [> 3.769 = 6.282 < 8.166] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)A146.CB, (T0547)P178.CB) [> 4.220 = 7.033 < 9.142] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)V131.CB) [> 4.470 = 7.450 < 9.685] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)T154.CB) [> 4.398 = 7.329 < 9.528] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)L430.CB) [> 4.441 = 7.402 < 9.623] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)T409.CB) [> 4.677 = 7.795 < 10.134] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)L430.CB) [> 4.315 = 7.191 < 9.349] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)L411.CB) [> 4.689 = 7.815 < 10.159] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)T390.CB) [> 3.585 = 5.975 < 7.768] w=0.146 to align_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)N270.CB) [> 4.472 = 7.453 < 9.688] w=0.137 to align_constraints # Constraint # added constraint: constraint((T0547)A69.CB, (T0547)F79.CB) [> 2.900 = 4.834 < 6.284] w=0.135 to align_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)I319.CB) [> 3.303 = 5.505 < 7.156] w=0.134 to align_constraints # Constraint # added constraint: constraint((T0547)E109.CB, (T0547)I319.CB) [> 3.324 = 5.540 < 7.202] w=0.134 to align_constraints # Constraint # added constraint: constraint((T0547)G199.CA, (T0547)L234.CB) [> 4.311 = 7.185 < 9.340] w=0.134 to align_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)V547.CB) [> 4.013 = 6.689 < 8.696] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)V436.CB) [> 4.310 = 7.183 < 9.337] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)L420.CB) [> 3.942 = 6.570 < 8.541] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)L420.CB) [> 3.933 = 6.555 < 8.522] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)G198.CA) [> 3.748 = 6.247 < 8.121] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)S287.CB) [> 3.382 = 5.637 < 7.328] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)D428.CB) [> 3.971 = 6.619 < 8.604] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)H410.CB) [> 4.141 = 6.902 < 8.973] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)S236.CB) [> 4.414 = 7.356 < 9.563] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)L303.CB, (T0547)P315.CB) [> 3.774 = 6.290 < 8.177] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)L47.CB) [> 3.848 = 6.413 < 8.337] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)G45.CA) [> 3.440 = 5.733 < 7.453] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)P335.CB) [> 4.053 = 6.755 < 8.782] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)Y279.CB, (T0547)L411.CB) [> 4.585 = 7.642 < 9.935] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)I537.CB) [> 4.138 = 6.896 < 8.965] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)I537.CB, (T0547)V547.CB) [> 4.168 = 6.947 < 9.031] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)I538.CB) [> 3.836 = 6.393 < 8.311] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)I540.CB) [> 3.814 = 6.357 < 8.265] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)I540.CB) [> 3.447 = 5.745 < 7.468] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)E548.CB) [> 3.457 = 5.762 < 7.490] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)V325.CB, (T0547)A416.CB) [> 4.310 = 7.183 < 9.338] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)E406.CB) [> 4.553 = 7.589 < 9.866] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)L258.CB) [> 4.481 = 7.469 < 9.709] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)H231.CB) [> 4.433 = 7.388 < 9.605] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)N152.CB, (T0547)A268.CB) [> 4.606 = 7.677 < 9.980] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)I382.CB) [> 4.198 = 6.997 < 9.095] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)S449.CB) [> 3.765 = 6.275 < 8.158] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)M450.CB) [> 4.156 = 6.926 < 9.004] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)S555.CB) [> 3.917 = 6.528 < 8.487] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)K352.CB) [> 3.817 = 6.361 < 8.270] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)N404.CB) [> 4.682 = 7.803 < 10.144] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)L85.CB, (T0547)V325.CB) [> 4.631 = 7.718 < 10.033] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)L429.CB) [> 3.634 = 6.056 < 7.873] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)T390.CB, (T0547)N425.CB) [> 4.548 = 7.580 < 9.854] w=0.133 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)G199.CA) [> 4.236 = 7.060 < 9.178] w=0.122 to align_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)L248.CB) [> 3.905 = 6.508 < 8.460] w=0.121 to align_constraints # Constraint # added constraint: constraint((T0547)L117.CB, (T0547)G143.CA) [> 4.296 = 7.160 < 9.308] w=0.121 to align_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)P315.CB) [> 3.832 = 6.387 < 8.303] w=0.121 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)N541.CB) [> 4.373 = 7.289 < 9.475] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)A427.CB) [> 4.305 = 7.175 < 9.328] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)F453.CB) [> 3.255 = 5.425 < 7.052] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)D452.CB) [> 3.911 = 6.518 < 8.473] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)V331.CB) [> 4.579 = 7.631 < 9.921] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)R259.CB, (T0547)I269.CB) [> 4.329 = 7.215 < 9.379] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)M229.CB) [> 4.434 = 7.390 < 9.607] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)V300.CB, (T0547)I317.CB) [> 3.742 = 6.236 < 8.107] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)G235.CA) [> 3.520 = 5.867 < 7.627] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)S236.CB) [> 3.769 = 6.282 < 8.167] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)K44.CB) [> 4.229 = 7.048 < 9.163] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)L47.CB) [> 3.745 = 6.242 < 8.115] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)V436.CB) [> 3.525 = 5.874 < 7.637] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)Q237.CB) [> 3.321 = 5.535 < 7.196] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)S539.CB) [> 4.055 = 6.759 < 8.786] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)E548.CB) [> 4.335 = 7.225 < 9.392] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)G549.CA) [> 4.084 = 6.806 < 8.848] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)L163.CB, (T0547)L182.CB) [> 4.475 = 7.458 < 9.695] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)I412.CB) [> 4.333 = 7.222 < 9.388] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)I412.CB) [> 4.526 = 7.543 < 9.806] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)E278.CB, (T0547)F324.CB) [> 3.866 = 6.443 < 8.376] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)A416.CB) [> 3.805 = 6.342 < 8.245] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)L408.CB) [> 4.607 = 7.678 < 9.981] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)G273.CA) [> 4.528 = 7.547 < 9.811] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)N297.CB) [> 4.702 = 7.837 < 10.188] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)G549.CA) [> 3.439 = 5.732 < 7.452] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)E115.CB, (T0547)T130.CB) [> 4.290 = 7.150 < 9.295] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)T409.CB) [> 4.390 = 7.317 < 9.512] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)H410.CB) [> 3.254 = 5.424 < 7.051] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)F340.CB, (T0547)T409.CB) [> 3.413 = 5.688 < 7.395] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)A536.CB) [> 3.371 = 5.618 < 7.304] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)L411.CB) [> 4.180 = 6.966 < 9.056] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)I153.CB, (T0547)M229.CB) [> 3.862 = 6.436 < 8.367] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)K203.CB) [> 3.325 = 5.542 < 7.205] w=0.120 to align_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)A307.CB) [> 3.599 = 5.998 < 7.797] w=0.119 to align_constraints # Constraint # added constraint: constraint((T0547)A69.CB, (T0547)A296.CB) [> 4.662 = 7.771 < 10.102] w=0.109 to align_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)L234.CB) [> 3.844 = 6.407 < 8.329] w=0.108 to align_constraints # Constraint # added constraint: constraint((T0547)I537.CB, (T0547)G549.CA) [> 2.898 = 4.830 < 6.279] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)I537.CB, (T0547)E548.CB) [> 3.047 = 5.078 < 6.602] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)D452.CB) [> 3.997 = 6.662 < 8.661] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)S449.CB) [> 3.665 = 6.109 < 7.942] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)F453.CB) [> 3.846 = 6.410 < 8.334] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)K589.CB) [> 3.384 = 5.641 < 7.333] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)K423.CB, (T0547)K589.CB) [> 3.574 = 5.957 < 7.744] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)F324.CB) [> 4.254 = 7.090 < 9.217] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)E546.CB) [> 3.405 = 5.675 < 7.378] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)I540.CB) [> 4.199 = 6.998 < 9.097] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)L408.CB) [> 3.848 = 6.413 < 8.337] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)I538.CB) [> 3.791 = 6.319 < 8.215] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)M450.CB) [> 4.102 = 6.836 < 8.887] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)F453.CB) [> 3.944 = 6.573 < 8.545] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)V436.CB) [> 3.948 = 6.580 < 8.554] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)A195.CB, (T0547)L234.CB) [> 3.668 = 6.114 < 7.948] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)F318.CB) [> 4.482 = 7.470 < 9.711] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)L429.CB) [> 4.368 = 7.281 < 9.465] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)L419.CB) [> 4.506 = 7.510 < 9.763] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)L391.CB) [> 3.619 = 6.032 < 7.841] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)L394.CB) [> 3.486 = 5.810 < 7.553] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)L313.CB) [> 3.643 = 6.071 < 7.892] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)L271.CB) [> 4.611 = 7.686 < 9.991] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)L429.CB) [> 4.214 = 7.023 < 9.130] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)L429.CB) [> 3.231 = 5.384 < 7.000] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)A195.CB, (T0547)G235.CA) [> 4.027 = 6.712 < 8.726] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)L429.CB) [> 4.482 = 7.470 < 9.711] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)L411.CB) [> 4.493 = 7.489 < 9.735] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)I538.CB) [> 3.178 = 5.297 < 6.887] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)H410.CB) [> 2.906 = 4.844 < 6.297] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)I412.CB) [> 3.835 = 6.392 < 8.310] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)K414.CB) [> 2.955 = 4.925 < 6.402] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)T390.CB) [> 3.647 = 6.079 < 7.903] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)S381.CB) [> 3.912 = 6.520 < 8.476] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)I550.CB) [> 4.084 = 6.806 < 8.848] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)G133.CA, (T0547)V191.CB) [> 4.228 = 7.047 < 9.162] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)V21.CB, (T0547)A30.CB) [> 4.247 = 7.078 < 9.201] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)V21.CB, (T0547)I31.CB) [> 3.091 = 5.152 < 6.697] w=0.106 to align_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)G192.CA) [> 2.458 = 4.096 < 5.325] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)I319.CB) [> 4.518 = 7.530 < 9.788] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)Y545.CB) [> 3.105 = 5.175 < 6.727] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)E535.CB) [> 4.485 = 7.474 < 9.717] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)S381.CB) [> 3.588 = 5.980 < 7.775] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)I317.CB) [> 4.389 = 7.315 < 9.509] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)T156.CB, (T0547)V191.CB) [> 4.159 = 6.931 < 9.011] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)T228.CB) [> 4.473 = 7.455 < 9.692] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)N179.CB) [> 4.596 = 7.661 < 9.959] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)K415.CB) [> 4.487 = 7.479 < 9.723] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)K415.CB) [> 4.665 = 7.775 < 10.108] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)I540.CB) [> 3.517 = 5.862 < 7.620] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)F324.CB) [> 3.862 = 6.437 < 8.368] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)F453.CB) [> 3.681 = 6.135 < 7.976] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)L391.CB) [> 3.903 = 6.506 < 8.457] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)A427.CB) [> 4.514 = 7.523 < 9.779] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)A69.CB, (T0547)V300.CB) [> 3.690 = 6.150 < 7.995] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)L429.CB) [> 3.503 = 5.839 < 7.591] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)L429.CB) [> 3.319 = 5.532 < 7.191] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)A536.CB, (T0547)G549.CA) [> 3.590 = 5.983 < 7.778] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)A536.CB, (T0547)V547.CB) [> 3.898 = 6.497 < 8.447] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)A536.CB) [> 3.587 = 5.978 < 7.771] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)V584.CB) [> 1.994 = 3.323 < 4.320] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)N265.CB, (T0547)D312.CB) [> 4.424 = 7.374 < 9.586] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)G235.CA, (T0547)G272.CA) [> 4.545 = 7.576 < 9.848] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)L313.CB) [> 3.398 = 5.663 < 7.361] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)G272.CA) [> 4.290 = 7.150 < 9.296] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)R137.CB, (T0547)I166.CB) [> 3.042 = 5.070 < 6.591] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)L375.CB) [> 2.713 = 4.522 < 5.879] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)I538.CB) [> 4.147 = 6.911 < 8.985] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)M120.CB, (T0547)I153.CB) [> 4.360 = 7.266 < 9.446] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)L430.CB) [> 3.721 = 6.202 < 8.062] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)L389.CB) [> 3.827 = 6.378 < 8.292] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)K267.CB) [> 4.121 = 6.869 < 8.930] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)A326.CB) [> 3.828 = 6.380 < 8.294] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)S197.CB) [> 2.971 = 4.951 < 6.437] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)I319.CB) [> 4.686 = 7.811 < 10.154] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)I31.CB) [> 3.975 = 6.625 < 8.613] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)I32.CB) [> 3.217 = 5.362 < 6.971] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)T390.CB, (T0547)P426.CB) [> 4.453 = 7.422 < 9.649] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)Y279.CB, (T0547)N328.CB) [> 4.440 = 7.401 < 9.621] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)L430.CB) [> 4.128 = 6.881 < 8.945] w=0.093 to align_constraints # Constraint # added constraint: constraint((T0547)R70.CB, (T0547)F79.CB) [> 3.200 = 5.333 < 6.932] w=0.084 to align_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)I157.CB) [> 4.413 = 7.355 < 9.562] w=0.084 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)G198.CA) [> 3.741 = 6.235 < 8.106] w=0.081 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)K543.CB) [> 3.380 = 5.634 < 7.324] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)A536.CB) [> 3.882 = 6.470 < 8.411] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)E535.CB) [> 3.317 = 5.528 < 7.187] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)A536.CB) [> 3.831 = 6.385 < 8.301] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)E535.CB) [> 4.235 = 7.058 < 9.175] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)E535.CB) [> 3.802 = 6.336 < 8.237] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)I538.CB) [> 3.720 = 6.200 < 8.060] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)I537.CB) [> 4.508 = 7.513 < 9.766] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)E535.CB) [> 3.980 = 6.634 < 8.624] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)I537.CB) [> 3.425 = 5.709 < 7.421] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)A536.CB) [> 4.589 = 7.649 < 9.944] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)E535.CB) [> 3.492 = 5.820 < 7.566] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)I540.CB) [> 2.958 = 4.930 < 6.409] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)S539.CB) [> 4.679 = 7.798 < 10.137] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)I538.CB) [> 2.763 = 4.604 < 5.986] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)I537.CB) [> 4.085 = 6.808 < 8.850] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)I540.CB) [> 3.957 = 6.594 < 8.573] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)S539.CB) [> 3.756 = 6.260 < 8.138] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)I537.CB) [> 3.270 = 5.450 < 7.085] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)I550.CB, (T0547)T559.CB) [> 3.401 = 5.668 < 7.368] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)G549.CA) [> 4.056 = 6.760 < 8.788] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)I551.CB) [> 4.166 = 6.943 < 9.026] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)I550.CB) [> 2.832 = 4.721 < 6.137] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)I317.CB) [> 4.505 = 7.508 < 9.761] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)K177.CB) [> 4.051 = 6.752 < 8.778] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)E406.CB) [> 3.839 = 6.398 < 8.318] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)A416.CB) [> 3.680 = 6.133 < 7.973] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)V397.CB) [> 3.944 = 6.574 < 8.546] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)N270.CB) [> 4.775 = 7.958 < 10.345] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)L258.CB) [> 4.001 = 6.668 < 8.669] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)D562.CB) [> 4.048 = 6.747 < 8.771] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)I538.CB) [> 3.392 = 5.653 < 7.349] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)L430.CB) [> 4.596 = 7.660 < 9.959] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)A195.CB, (T0547)K246.CB) [> 4.203 = 7.005 < 9.107] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)I537.CB) [> 3.835 = 6.392 < 8.310] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)N13.CB, (T0547)F51.CB) [> 3.461 = 5.768 < 7.499] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)N13.CB, (T0547)I23.CB) [> 3.692 = 6.153 < 7.999] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)S539.CB) [> 3.861 = 6.435 < 8.366] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)H410.CB) [> 4.530 = 7.550 < 9.815] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)I538.CB, (T0547)G549.CA) [> 4.560 = 7.600 < 9.880] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)I551.CB) [> 2.537 = 4.228 < 5.496] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)I537.CB) [> 4.269 = 7.115 < 9.249] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)A536.CB) [> 3.451 = 5.752 < 7.478] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)S539.CB) [> 3.167 = 5.278 < 6.861] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)I538.CB) [> 4.142 = 6.904 < 8.975] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)S539.CB) [> 3.667 = 6.111 < 7.945] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)I412.CB) [> 4.294 = 7.157 < 9.304] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)I317.CB) [> 4.436 = 7.394 < 9.612] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)L313.CB) [> 3.756 = 6.260 < 8.138] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)N265.CB) [> 4.061 = 6.769 < 8.799] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)K246.CB) [> 4.327 = 7.212 < 9.375] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)E240.CB) [> 4.066 = 6.776 < 8.809] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)K246.CB) [> 3.859 = 6.432 < 8.361] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)K203.CB) [> 4.614 = 7.691 < 9.998] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)L108.CB, (T0547)L118.CB) [> 4.703 = 7.839 < 10.191] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)S321.CB) [> 4.763 = 7.939 < 10.321] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)E72.CB, (T0547)V300.CB) [> 4.675 = 7.791 < 10.129] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)A69.CB, (T0547)I317.CB) [> 3.114 = 5.190 < 6.746] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)K68.CB, (T0547)A296.CB) [> 3.924 = 6.540 < 8.502] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)A536.CB) [> 3.443 = 5.739 < 7.460] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)I537.CB) [> 4.048 = 6.746 < 8.770] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)K589.CB) [> 3.962 = 6.603 < 8.584] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)K353.CB) [> 4.550 = 7.583 < 9.858] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)G274.CA) [> 4.532 = 7.554 < 9.820] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)T291.CB) [> 3.621 = 6.035 < 7.846] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)H233.CB, (T0547)N270.CB) [> 4.643 = 7.739 < 10.061] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)G198.CA, (T0547)L234.CB) [> 3.179 = 5.299 < 6.888] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)A195.CB, (T0547)A247.CB) [> 4.507 = 7.512 < 9.766] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)H242.CB) [> 4.181 = 6.968 < 9.058] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)T390.CB) [> 4.244 = 7.074 < 9.196] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)I382.CB, (T0547)L408.CB) [> 4.550 = 7.584 < 9.859] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)S202.CB) [> 4.018 = 6.697 < 8.706] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)L429.CB) [> 4.488 = 7.480 < 9.724] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)G159.CA, (T0547)L182.CB) [> 4.772 = 7.953 < 10.339] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)H410.CB) [> 4.649 = 7.748 < 10.072] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)T239.CB) [> 2.776 = 4.627 < 6.015] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)K196.CB, (T0547)K246.CB) [> 3.986 = 6.643 < 8.635] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)E240.CB) [> 3.583 = 5.972 < 7.763] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)F14.CB, (T0547)I23.CB) [> 3.736 = 6.227 < 8.095] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)P426.CB) [> 4.434 = 7.390 < 9.608] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)F204.CB) [> 4.516 = 7.527 < 9.785] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)K414.CB) [> 4.569 = 7.615 < 9.900] w=0.080 to align_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)G272.CA) [> 4.596 = 7.659 < 9.957] w=0.070 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)N132.CB) [> 4.592 = 7.654 < 9.950] w=0.069 to align_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)I540.CB) [> 3.782 = 6.303 < 8.194] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)L446.CB, (T0547)I537.CB) [> 3.668 = 6.113 < 7.947] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)K203.CB) [> 3.878 = 6.464 < 8.403] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)G192.CA) [> 4.688 = 7.814 < 10.158] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)M229.CB) [> 4.443 = 7.404 < 9.626] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)Y63.CB, (T0547)F318.CB) [> 4.343 = 7.238 < 9.410] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)T409.CB) [> 4.227 = 7.045 < 9.159] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)L408.CB) [> 3.353 = 5.588 < 7.264] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)A536.CB) [> 3.511 = 5.852 < 7.607] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)F444.CB) [> 3.872 = 6.453 < 8.389] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)T239.CB) [> 4.494 = 7.490 < 9.737] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)I540.CB) [> 3.183 = 5.305 < 6.896] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)N541.CB) [> 3.756 = 6.260 < 8.138] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)I23.CB, (T0547)V331.CB) [> 3.972 = 6.619 < 8.605] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)I23.CB, (T0547)F51.CB) [> 3.234 = 5.389 < 7.006] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)I23.CB, (T0547)L49.CB) [> 3.410 = 5.684 < 7.389] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)V21.CB, (T0547)T409.CB) [> 3.769 = 6.282 < 8.166] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)F14.CB, (T0547)F51.CB) [> 4.655 = 7.758 < 10.086] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)E546.CB) [> 3.477 = 5.796 < 7.535] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)S539.CB) [> 4.381 = 7.302 < 9.492] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)S539.CB) [> 3.539 = 5.899 < 7.669] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)L557.CB, (T0547)I567.CB) [> 3.181 = 5.302 < 6.892] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)I556.CB, (T0547)I567.CB) [> 2.391 = 3.985 < 5.180] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)I550.CB) [> 4.046 = 6.743 < 8.766] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)T559.CB) [> 3.804 = 6.340 < 8.241] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)I23.CB, (T0547)I34.CB) [> 4.286 = 7.143 < 9.285] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)E314.CB) [> 4.438 = 7.396 < 9.615] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)I317.CB) [> 4.651 = 7.751 < 10.076] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)Q354.CB) [> 4.528 = 7.547 < 9.811] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)F324.CB) [> 4.129 = 6.882 < 8.946] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)N443.CB) [> 3.527 = 5.878 < 7.642] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)G421.CA) [> 3.185 = 5.309 < 6.902] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)K246.CB) [> 3.491 = 5.818 < 7.563] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)N152.CB, (T0547)T228.CB) [> 4.321 = 7.201 < 9.361] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)I319.CB) [> 4.683 = 7.806 < 10.147] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)R439.CB) [> 3.606 = 6.010 < 7.813] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)H231.CB) [> 4.369 = 7.282 < 9.467] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)E552.CB) [> 3.651 = 6.085 < 7.910] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)F444.CB) [> 3.356 = 5.593 < 7.271] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)P176.CB) [> 3.906 = 6.509 < 8.462] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)N141.CB, (T0547)P176.CB) [> 3.507 = 5.846 < 7.599] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)H410.CB) [> 4.478 = 7.464 < 9.703] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)F392.CB) [> 2.942 = 4.903 < 6.374] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)V331.CB) [> 3.750 = 6.251 < 8.126] w=0.066 to align_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)T154.CB) [> 4.650 = 7.751 < 10.076] w=0.057 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)G198.CA) [> 4.009 = 6.681 < 8.686] w=0.054 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)L441.CB) [> 3.872 = 6.454 < 8.390] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)R323.CB) [> 4.214 = 7.023 < 9.130] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)I537.CB) [> 3.569 = 5.948 < 7.733] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)G272.CA) [> 4.653 = 7.755 < 10.081] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)F444.CB) [> 3.826 = 6.376 < 8.289] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)F444.CB) [> 3.666 = 6.110 < 7.942] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)L408.CB) [> 4.601 = 7.668 < 9.969] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)V547.CB) [> 3.721 = 6.201 < 8.061] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)I538.CB) [> 4.640 = 7.733 < 10.053] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)I551.CB) [> 4.501 = 7.502 < 9.753] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)I537.CB) [> 4.116 = 6.860 < 8.917] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)T228.CB) [> 4.433 = 7.389 < 9.606] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)F444.CB) [> 3.675 = 6.124 < 7.962] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)P451.CB) [> 2.499 = 4.164 < 5.414] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)M450.CB) [> 2.766 = 4.609 < 5.992] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)L560.CB) [> 3.573 = 5.955 < 7.741] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)L563.CB) [> 3.452 = 5.754 < 7.480] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)S539.CB) [> 4.708 = 7.846 < 10.200] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)V442.CB) [> 4.314 = 7.190 < 9.347] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)G549.CA) [> 3.296 = 5.493 < 7.141] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)L446.CB) [> 4.495 = 7.491 < 9.739] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)H233.CB) [> 4.190 = 6.983 < 9.078] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)I412.CB) [> 4.403 = 7.338 < 9.540] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)A536.CB) [> 3.763 = 6.271 < 8.152] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)F51.CB) [> 4.632 = 7.720 < 10.036] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)I16.CB, (T0547)A374.CB) [> 3.835 = 6.392 < 8.310] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)F14.CB, (T0547)V331.CB) [> 4.548 = 7.581 < 9.855] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)M450.CB) [> 3.855 = 6.425 < 8.352] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)I306.CB) [> 3.602 = 6.004 < 7.805] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)S197.CB, (T0547)S236.CB) [> 4.357 = 7.262 < 9.440] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)G235.CA) [> 4.031 = 6.718 < 8.733] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)N443.CB) [> 4.107 = 6.845 < 8.898] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)Y440.CB) [> 3.651 = 6.085 < 7.911] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)Y440.CB) [> 4.016 = 6.693 < 8.701] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)N161.CB) [> 3.856 = 6.426 < 8.354] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)P426.CB) [> 4.375 = 7.291 < 9.478] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)N443.CB) [> 3.837 = 6.396 < 8.314] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)N13.CB, (T0547)H53.CB) [> 3.050 = 5.084 < 6.609] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)V442.CB) [> 3.963 = 6.605 < 8.587] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)V442.CB) [> 2.914 = 4.857 < 6.313] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)I538.CB) [> 3.683 = 6.139 < 7.981] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)W194.CB, (T0547)K246.CB) [> 4.382 = 7.304 < 9.495] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)W194.CB, (T0547)L234.CB) [> 4.519 = 7.532 < 9.791] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)T239.CB) [> 3.157 = 5.262 < 6.840] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)E542.CB) [> 4.090 = 6.816 < 8.861] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)H410.CB) [> 4.223 = 7.038 < 9.149] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)K415.CB) [> 4.594 = 7.656 < 9.953] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)A416.CB) [> 3.330 = 5.550 < 7.215] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)A416.CB) [> 4.325 = 7.208 < 9.370] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)S477.CB) [> 4.225 = 7.042 < 9.155] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)S475.CB) [> 3.389 = 5.649 < 7.343] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)A476.CB) [> 3.194 = 5.324 < 6.921] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)S477.CB) [> 4.238 = 7.063 < 9.182] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)W479.CB) [> 3.780 = 6.300 < 8.190] w=0.053 to align_constraints # Constraint # added constraint: constraint((T0547)N201.CB, (T0547)G235.CA) [> 4.489 = 7.481 < 9.725] w=0.041 to align_constraints # Constraint # added constraint: constraint((T0547)A114.CB, (T0547)L139.CB) [> 4.572 = 7.621 < 9.907] w=0.041 to align_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)Y290.CB) [> 3.772 = 6.287 < 8.173] w=0.041 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)P356.CB) [> 3.953 = 6.589 < 8.565] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)G159.CA, (T0547)T207.CB) [> 4.654 = 7.756 < 10.083] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)P533.CB) [> 2.782 = 4.636 < 6.027] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)T534.CB) [> 2.545 = 4.241 < 5.513] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)V442.CB) [> 4.042 = 6.737 < 8.759] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)P426.CB) [> 3.607 = 6.011 < 7.814] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)P426.CB) [> 3.831 = 6.384 < 8.300] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)A536.CB) [> 4.147 = 6.912 < 8.986] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)I537.CB) [> 3.772 = 6.286 < 8.172] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)I537.CB) [> 4.466 = 7.444 < 9.677] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)I538.CB) [> 2.571 = 4.285 < 5.570] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)E535.CB) [> 3.613 = 6.022 < 7.829] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)A536.CB) [> 3.759 = 6.265 < 8.145] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)I538.CB) [> 3.994 = 6.657 < 8.654] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)E535.CB) [> 4.682 = 7.804 < 10.145] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)T534.CB) [> 3.940 = 6.567 < 8.537] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)A536.CB) [> 3.838 = 6.397 < 8.316] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)T534.CB) [> 2.806 = 4.677 < 6.081] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)A536.CB) [> 3.802 = 6.336 < 8.237] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)A536.CB) [> 4.521 = 7.534 < 9.795] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)K353.CB) [> 3.128 = 5.214 < 6.778] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)T156.CB, (T0547)T228.CB) [> 4.442 = 7.403 < 9.623] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)I407.CB) [> 4.282 = 7.136 < 9.277] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)L385.CB) [> 3.529 = 5.882 < 7.646] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)G181.CA) [> 4.795 = 7.992 < 10.389] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)H233.CB) [> 4.737 = 7.896 < 10.264] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)I306.CB) [> 3.521 = 5.868 < 7.628] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)E546.CB) [> 4.591 = 7.652 < 9.948] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)A416.CB, (T0547)D428.CB) [> 4.317 = 7.194 < 9.353] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)N152.CB) [> 4.126 = 6.876 < 8.939] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)N152.CB, (T0547)I180.CB) [> 4.112 = 6.853 < 8.909] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)L441.CB) [> 3.807 = 6.345 < 8.248] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)L446.CB) [> 2.865 = 4.775 < 6.207] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)L446.CB) [> 4.511 = 7.519 < 9.775] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)I319.CB) [> 4.671 = 7.785 < 10.121] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)I193.CB) [> 3.763 = 6.271 < 8.152] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)A536.CB) [> 4.234 = 7.056 < 9.173] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)I319.CB) [> 4.778 = 7.964 < 10.353] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)L563.CB) [> 3.673 = 6.121 < 7.957] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)P451.CB, (T0547)E535.CB) [> 2.963 = 4.939 < 6.420] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)E320.CB) [> 4.332 = 7.220 < 9.386] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)N105.CB) [> 3.458 = 5.763 < 7.491] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)A81.CB, (T0547)N105.CB) [> 3.047 = 5.078 < 6.601] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)N105.CB) [> 4.079 = 6.799 < 8.838] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)N105.CB) [> 2.419 = 4.032 < 5.242] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)G235.CA, (T0547)L248.CB) [> 4.742 = 7.904 < 10.275] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)T228.CB) [> 4.250 = 7.084 < 9.209] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)H187.CB) [> 4.394 = 7.323 < 9.519] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)L206.CB) [> 3.620 = 6.033 < 7.843] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)L429.CB) [> 3.935 = 6.558 < 8.526] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)L429.CB) [> 4.034 = 6.723 < 8.740] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)D428.CB) [> 3.628 = 6.046 < 7.860] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)L429.CB) [> 3.582 = 5.969 < 7.760] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)L563.CB) [> 3.268 = 5.446 < 7.080] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)D564.CB) [> 4.083 = 6.805 < 8.847] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)I556.CB) [> 4.514 = 7.523 < 9.780] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)L557.CB) [> 3.685 = 6.141 < 7.984] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)L560.CB) [> 4.050 = 6.751 < 8.776] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)M450.CB, (T0547)E535.CB) [> 4.636 = 7.727 < 10.045] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)N201.CB) [> 3.034 = 5.057 < 6.574] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)G199.CA) [> 4.202 = 7.004 < 9.105] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)K196.CB, (T0547)S236.CB) [> 3.819 = 6.364 < 8.274] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)G235.CA, (T0547)A276.CB) [> 3.792 = 6.320 < 8.216] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)F324.CB) [> 3.837 = 6.396 < 8.315] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)A330.CB) [> 4.738 = 7.896 < 10.265] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)E552.CB) [> 3.818 = 6.363 < 8.271] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)I302.CB) [> 4.419 = 7.366 < 9.576] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)W454.CB) [> 4.612 = 7.687 < 9.993] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)N305.CB) [> 4.770 = 7.950 < 10.335] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)I319.CB) [> 4.668 = 7.779 < 10.113] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)K414.CB) [> 3.518 = 5.863 < 7.621] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)F460.CB) [> 2.825 = 4.709 < 6.121] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)I538.CB, (T0547)I550.CB) [> 3.817 = 6.362 < 8.270] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)E278.CB, (T0547)S321.CB) [> 4.735 = 7.892 < 10.260] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)L441.CB) [> 4.354 = 7.257 < 9.434] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)E158.CB) [> 4.365 = 7.275 < 9.458] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)L441.CB) [> 3.658 = 6.097 < 7.926] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)V442.CB) [> 3.485 = 5.809 < 7.551] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)L419.CB) [> 4.404 = 7.339 < 9.541] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)L446.CB) [> 3.927 = 6.545 < 8.509] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)R183.CB) [> 3.900 = 6.500 < 8.449] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)N13.CB, (T0547)H329.CB) [> 4.632 = 7.721 < 10.037] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)V331.CB) [> 4.571 = 7.618 < 9.903] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)Y25.CB, (T0547)I34.CB) [> 3.998 = 6.663 < 8.662] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L38.CB, (T0547)L47.CB) [> 4.185 = 6.975 < 9.068] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L38.CB, (T0547)L49.CB) [> 4.364 = 7.273 < 9.455] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L38.CB, (T0547)I333.CB) [> 4.407 = 7.345 < 9.549] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)V325.CB) [> 4.611 = 7.686 < 9.991] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)A536.CB) [> 4.618 = 7.696 < 10.005] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)A536.CB) [> 3.822 = 6.371 < 8.282] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)I538.CB) [> 3.388 = 5.647 < 7.341] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)S539.CB) [> 4.655 = 7.759 < 10.087] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)N541.CB) [> 4.423 = 7.372 < 9.583] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)A536.CB) [> 3.869 = 6.448 < 8.382] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)E12.CB, (T0547)N328.CB) [> 4.660 = 7.767 < 10.097] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)G181.CA, (T0547)I269.CB) [> 4.571 = 7.618 < 9.903] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)I15.CB, (T0547)K28.CB) [> 4.474 = 7.457 < 9.694] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)N13.CB, (T0547)C22.CB) [> 3.754 = 6.256 < 8.133] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L38.CB, (T0547)Y545.CB) [> 3.761 = 6.269 < 8.149] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)G544.CA) [> 3.826 = 6.377 < 8.290] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)D480.CB) [> 2.728 = 4.547 < 5.912] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)D480.CB) [> 2.514 = 4.190 < 5.447] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)W479.CB) [> 3.870 = 6.450 < 8.385] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)D480.CB) [> 3.997 = 6.662 < 8.661] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)W479.CB) [> 2.672 = 4.453 < 5.789] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)W479.CB) [> 4.043 = 6.738 < 8.760] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)I478.CB) [> 3.215 = 5.359 < 6.967] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)S477.CB) [> 3.896 = 6.493 < 8.441] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)A476.CB) [> 4.405 = 7.342 < 9.545] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)W479.CB) [> 3.376 = 5.626 < 7.314] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)W479.CB) [> 2.950 = 4.916 < 6.391] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)I23.CB, (T0547)W479.CB) [> 3.665 = 6.108 < 7.941] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)I23.CB, (T0547)I478.CB) [> 4.028 = 6.714 < 8.728] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)I23.CB, (T0547)S477.CB) [> 4.338 = 7.230 < 9.399] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)I478.CB) [> 3.168 = 5.280 < 6.864] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)V21.CB, (T0547)I478.CB) [> 3.886 = 6.477 < 8.421] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)V21.CB, (T0547)S477.CB) [> 4.506 = 7.511 < 9.764] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)A476.CB) [> 4.617 = 7.695 < 10.003] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)Y290.CB) [> 3.860 = 6.433 < 8.363] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)A476.CB) [> 4.005 = 6.675 < 8.677] w=0.040 to align_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)L271.CB) [> 4.566 = 7.609 < 9.892] w=0.031 to align_constraints # Constraint # added constraint: constraint((T0547)A114.CB, (T0547)I142.CB) [> 4.097 = 6.828 < 8.876] w=0.028 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)N443.CB) [> 4.029 = 6.715 < 8.729] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)V442.CB) [> 4.534 = 7.557 < 9.824] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)N443.CB) [> 2.886 = 4.809 < 6.252] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)F444.CB) [> 4.791 = 7.984 < 10.380] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)V442.CB) [> 3.336 = 5.561 < 7.229] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)N443.CB) [> 4.192 = 6.986 < 9.082] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)F444.CB) [> 3.261 = 5.435 < 7.065] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)F460.CB, (T0547)I538.CB) [> 2.724 = 4.540 < 5.903] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)T534.CB) [> 4.670 = 7.783 < 10.118] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)A114.CB, (T0547)N141.CB) [> 4.617 = 7.695 < 10.004] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)G421.CA) [> 4.464 = 7.439 < 9.671] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L139.CB, (T0547)L155.CB) [> 3.696 = 6.160 < 8.008] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)L429.CB) [> 2.971 = 4.952 < 6.438] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)P533.CB) [> 2.991 = 4.986 < 6.481] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)P533.CB) [> 3.690 = 6.149 < 7.994] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)P461.CB, (T0547)I538.CB) [> 4.113 = 6.855 < 8.911] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)G107.CA, (T0547)I317.CB) [> 4.611 = 7.685 < 9.991] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)L441.CB) [> 4.226 = 7.043 < 9.156] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)S539.CB, (T0547)D558.CB) [> 4.207 = 7.012 < 9.116] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V504.CB, (T0547)T534.CB) [> 3.895 = 6.492 < 8.440] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)D503.CB, (T0547)T534.CB) [> 3.037 = 5.062 < 6.581] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I481.CB, (T0547)V502.CB) [> 3.700 = 6.166 < 8.016] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)W479.CB, (T0547)A536.CB) [> 4.583 = 7.638 < 9.930] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)D480.CB) [> 3.804 = 6.340 < 8.243] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)W479.CB) [> 3.265 = 5.442 < 7.075] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)I478.CB) [> 3.384 = 5.641 < 7.333] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)S477.CB) [> 4.138 = 6.897 < 8.966] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)W479.CB) [> 3.529 = 5.881 < 7.646] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)D480.CB) [> 3.604 = 6.007 < 7.810] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)W479.CB) [> 3.155 = 5.259 < 6.837] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)S477.CB) [> 3.812 = 6.353 < 8.259] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)S477.CB) [> 4.216 = 7.027 < 9.135] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)W479.CB) [> 4.059 = 6.765 < 8.794] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)I478.CB) [> 4.630 = 7.717 < 10.033] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)S477.CB) [> 3.510 = 5.851 < 7.606] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)I478.CB) [> 3.579 = 5.965 < 7.755] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)S477.CB) [> 4.661 = 7.769 < 10.099] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)I481.CB) [> 3.079 = 5.131 < 6.670] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)L365.CB) [> 2.314 = 3.857 < 5.014] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)D41.CB, (T0547)I407.CB) [> 3.858 = 6.429 < 8.358] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)P461.CB, (T0547)A553.CB) [> 4.031 = 6.718 < 8.734] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)Q458.CB, (T0547)A553.CB) [> 3.366 = 5.611 < 7.294] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)N459.CB) [> 3.576 = 5.960 < 7.748] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)L456.CB) [> 3.597 = 5.995 < 7.794] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)N459.CB) [> 3.621 = 6.035 < 7.845] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)L456.CB) [> 4.161 = 6.936 < 9.016] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)F453.CB) [> 2.658 = 4.431 < 5.760] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)F453.CB) [> 3.887 = 6.478 < 8.422] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)W454.CB) [> 2.847 = 4.745 < 6.168] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)L456.CB) [> 4.054 = 6.757 < 8.784] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)F444.CB) [> 4.063 = 6.771 < 8.803] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)S539.CB) [> 3.107 = 5.178 < 6.731] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)S539.CB) [> 3.837 = 6.395 < 8.313] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)S539.CB) [> 4.540 = 7.567 < 9.837] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)I481.CB) [> 3.476 = 5.793 < 7.531] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)D480.CB) [> 4.603 = 7.671 < 9.973] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)W479.CB) [> 2.996 = 4.994 < 6.492] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)I478.CB) [> 4.081 = 6.802 < 8.843] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)I481.CB) [> 3.789 = 6.316 < 8.210] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)D480.CB) [> 3.610 = 6.017 < 7.822] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)W479.CB) [> 4.332 = 7.220 < 9.386] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)I478.CB) [> 3.242 = 5.404 < 7.025] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)V502.CB) [> 3.659 = 6.099 < 7.928] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)I481.CB) [> 2.280 = 3.800 < 4.940] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)D480.CB) [> 4.400 = 7.334 < 9.534] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)I481.CB) [> 4.307 = 7.179 < 9.332] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)D480.CB) [> 3.388 = 5.647 < 7.342] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)A416.CB) [> 4.011 = 6.686 < 8.691] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)V504.CB) [> 3.918 = 6.531 < 8.490] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)V502.CB) [> 3.755 = 6.258 < 8.136] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)I481.CB) [> 4.203 = 7.004 < 9.105] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)V504.CB) [> 3.874 = 6.457 < 8.394] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)R323.CB) [> 4.780 = 7.967 < 10.357] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)E561.CB) [> 3.063 = 5.104 < 6.635] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)A536.CB) [> 3.787 = 6.312 < 8.205] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)I407.CB) [> 4.688 = 7.814 < 10.158] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)V331.CB) [> 4.673 = 7.788 < 10.124] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)T534.CB) [> 4.735 = 7.891 < 10.259] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)P533.CB) [> 3.788 = 6.313 < 8.207] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)P533.CB) [> 3.502 = 5.837 < 7.588] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)F444.CB) [> 4.209 = 7.016 < 9.120] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)F444.CB) [> 4.670 = 7.784 < 10.119] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)L560.CB) [> 3.530 = 5.884 < 7.649] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)D428.CB) [> 3.907 = 6.511 < 8.465] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)T534.CB) [> 4.695 = 7.825 < 10.172] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)F444.CB) [> 4.733 = 7.889 < 10.255] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)E406.CB) [> 4.299 = 7.165 < 9.315] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)Y290.CB, (T0547)S321.CB) [> 4.346 = 7.243 < 9.416] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)S202.CB) [> 3.171 = 5.285 < 6.870] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)N443.CB) [> 4.294 = 7.156 < 9.303] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)I538.CB) [> 4.517 = 7.528 < 9.787] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)L563.CB) [> 4.244 = 7.073 < 9.195] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)A416.CB, (T0547)P426.CB) [> 3.716 = 6.194 < 8.052] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)H532.CB) [> 3.090 = 5.149 < 6.694] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)P533.CB) [> 2.824 = 4.706 < 6.118] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)A416.CB, (T0547)P533.CB) [> 3.717 = 6.196 < 8.054] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)Y565.CB) [> 4.208 = 7.013 < 9.117] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)I269.CB) [> 4.647 = 7.746 < 10.069] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)S381.CB) [> 3.312 = 5.520 < 7.176] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)K414.CB) [> 4.677 = 7.794 < 10.133] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)P335.CB) [> 4.384 = 7.307 < 9.499] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)A416.CB, (T0547)L429.CB) [> 4.128 = 6.880 < 8.944] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)D428.CB) [> 3.812 = 6.354 < 8.260] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)A553.CB) [> 2.949 = 4.915 < 6.389] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)I538.CB) [> 4.302 = 7.170 < 9.320] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)A553.CB) [> 2.981 = 4.969 < 6.459] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L85.CB, (T0547)N124.CB) [> 4.757 = 7.928 < 10.307] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)L271.CB) [> 4.545 = 7.575 < 9.847] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)N270.CB) [> 4.560 = 7.601 < 9.881] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)I269.CB) [> 4.239 = 7.065 < 9.185] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)G272.CA) [> 4.678 = 7.796 < 10.135] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)D480.CB) [> 4.703 = 7.839 < 10.190] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)W479.CB) [> 3.636 = 6.060 < 7.878] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)S477.CB) [> 3.567 = 5.945 < 7.728] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)A476.CB) [> 4.800 = 8.000 < 10.400] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)S539.CB) [> 3.833 = 6.388 < 8.305] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)A476.CB) [> 2.647 = 4.412 < 5.736] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)S475.CB) [> 4.348 = 7.246 < 9.420] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)P356.CB) [> 4.786 = 7.977 < 10.370] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)S539.CB) [> 3.399 = 5.666 < 7.365] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)D428.CB) [> 4.739 = 7.898 < 10.267] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)K353.CB) [> 4.723 = 7.872 < 10.234] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)L408.CB) [> 4.743 = 7.906 < 10.277] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)I538.CB) [> 4.672 = 7.787 < 10.124] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)W454.CB, (T0547)D469.CB) [> 3.043 = 5.072 < 6.593] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)F453.CB) [> 4.702 = 7.836 < 10.187] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)V584.CB) [> 4.579 = 7.631 < 9.921] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)W454.CB) [> 4.111 = 6.852 < 8.907] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)L271.CB) [> 3.950 = 6.584 < 8.559] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)A195.CB, (T0547)S236.CB) [> 2.228 = 3.713 < 4.827] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)W194.CB, (T0547)Y363.CB) [> 3.437 = 5.728 < 7.446] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)W194.CB, (T0547)L362.CB) [> 4.109 = 6.849 < 8.904] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)K246.CB) [> 3.849 = 6.416 < 8.340] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)N289.CB) [> 4.313 = 7.189 < 9.346] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)S485.CB) [> 2.847 = 4.744 < 6.168] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)D484.CB) [> 2.792 = 4.653 < 6.050] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)C483.CB) [> 3.686 = 6.144 < 7.987] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)T482.CB) [> 3.642 = 6.070 < 7.890] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)I538.CB) [> 4.600 = 7.667 < 9.967] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)C483.CB) [> 3.032 = 5.053 < 6.569] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)C483.CB) [> 3.889 = 6.481 < 8.426] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)T482.CB) [> 2.612 = 4.353 < 5.660] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)I481.CB) [> 4.068 = 6.779 < 8.813] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)L441.CB) [> 3.626 = 6.044 < 7.857] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)C483.CB) [> 3.787 = 6.311 < 8.205] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)I481.CB) [> 3.142 = 5.237 < 6.808] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)I481.CB) [> 4.034 = 6.724 < 8.741] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)I481.CB) [> 3.415 = 5.692 < 7.400] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)L394.CB) [> 3.384 = 5.640 < 7.332] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)H233.CB) [> 4.472 = 7.454 < 9.690] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)H231.CB) [> 4.595 = 7.658 < 9.956] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)L441.CB) [> 3.824 = 6.374 < 8.286] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)C483.CB) [> 4.670 = 7.784 < 10.119] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)H233.CB) [> 4.658 = 7.764 < 10.093] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)L365.CB) [> 4.784 = 7.973 < 10.366] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)A276.CB) [> 3.550 = 5.917 < 7.692] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)N11.CB, (T0547)L411.CB) [> 3.776 = 6.294 < 8.182] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)G10.CA, (T0547)E278.CB) [> 3.484 = 5.807 < 7.549] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)G10.CA, (T0547)V277.CB) [> 4.547 = 7.578 < 9.852] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)W9.CB, (T0547)N284.CB) [> 4.354 = 7.256 < 9.433] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)W9.CB, (T0547)E278.CB) [> 2.897 = 4.828 < 6.277] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)R173.CB) [> 4.175 = 6.959 < 9.046] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)L430.CB) [> 4.078 = 6.797 < 8.837] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)K415.CB) [> 4.585 = 7.642 < 9.934] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)R173.CB) [> 4.270 = 7.117 < 9.252] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)Y25.CB, (T0547)D480.CB) [> 4.137 = 6.895 < 8.963] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)Y25.CB, (T0547)W479.CB) [> 3.551 = 5.918 < 7.693] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)Y25.CB, (T0547)H53.CB) [> 4.536 = 7.560 < 9.828] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)Y25.CB, (T0547)V35.CB) [> 4.794 = 7.990 < 10.387] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)D480.CB) [> 3.496 = 5.827 < 7.575] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)W479.CB) [> 4.705 = 7.841 < 10.194] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I23.CB, (T0547)D480.CB) [> 4.584 = 7.640 < 9.932] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)D480.CB) [> 3.252 = 5.420 < 7.047] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)W479.CB) [> 4.023 = 6.704 < 8.716] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)P52.CB) [> 3.612 = 6.019 < 7.825] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)N18.CB, (T0547)Y122.CB) [> 3.939 = 6.565 < 8.535] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)L441.CB) [> 3.243 = 5.404 < 7.025] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)L430.CB) [> 4.526 = 7.543 < 9.806] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)E320.CB) [> 4.566 = 7.610 < 9.893] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)F392.CB) [> 4.453 = 7.421 < 9.647] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)I537.CB) [> 3.659 = 6.098 < 7.927] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)G10.CA, (T0547)H329.CB) [> 3.370 = 5.617 < 7.301] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)N11.CB, (T0547)F51.CB) [> 4.178 = 6.964 < 9.053] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)E12.CB, (T0547)F51.CB) [> 2.881 = 4.802 < 6.243] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)F14.CB, (T0547)K28.CB) [> 4.327 = 7.212 < 9.375] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)G19.CA, (T0547)F51.CB) [> 3.987 = 6.645 < 8.639] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)G19.CA, (T0547)H53.CB) [> 4.586 = 7.643 < 9.936] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)P533.CB) [> 3.938 = 6.563 < 8.531] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)P533.CB) [> 2.943 = 4.906 < 6.377] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)E278.CB) [> 2.927 = 4.878 < 6.341] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)Y279.CB) [> 4.079 = 6.798 < 8.838] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)N328.CB) [> 4.428 = 7.379 < 9.593] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)L411.CB) [> 3.026 = 5.043 < 6.555] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)I412.CB) [> 3.480 = 5.801 < 7.541] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)W9.CB, (T0547)V331.CB) [> 4.366 = 7.277 < 9.460] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)W9.CB, (T0547)L411.CB) [> 3.203 = 5.339 < 6.941] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)W9.CB, (T0547)I412.CB) [> 4.640 = 7.733 < 10.053] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)S197.CB, (T0547)K246.CB) [> 3.877 = 6.462 < 8.400] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)I537.CB) [> 4.696 = 7.827 < 10.176] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)G19.CA, (T0547)N328.CB) [> 4.521 = 7.535 < 9.796] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)F51.CB) [> 2.805 = 4.675 < 6.077] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)H53.CB) [> 3.290 = 5.483 < 7.128] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V21.CB, (T0547)F51.CB) [> 4.626 = 7.710 < 10.023] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)I34.CB) [> 3.675 = 6.124 < 7.962] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)T534.CB) [> 3.438 = 5.730 < 7.449] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)T534.CB) [> 3.793 = 6.322 < 8.219] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)W194.CB, (T0547)I238.CB) [> 4.708 = 7.847 < 10.202] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)L515.CB) [> 3.146 = 5.243 < 6.816] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)F514.CB) [> 3.551 = 5.919 < 7.694] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)L515.CB) [> 3.822 = 6.370 < 8.281] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)F514.CB) [> 3.804 = 6.339 < 8.241] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)F514.CB) [> 3.520 = 5.867 < 7.628] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)F513.CB) [> 3.446 = 5.743 < 7.466] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)G512.CA) [> 3.715 = 6.192 < 8.050] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)G512.CA) [> 4.363 = 7.272 < 9.453] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)R474.CB) [> 3.683 = 6.138 < 7.979] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)V21.CB, (T0547)P52.CB) [> 3.822 = 6.371 < 8.282] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)S475.CB) [> 4.637 = 7.728 < 10.047] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)L574.CB) [> 3.167 = 5.278 < 6.861] w=0.027 to align_constraints # Constraint # added constraint: constraint((T0547)S202.CB, (T0547)H233.CB) [> 3.313 = 5.522 < 7.179] w=0.015 to align_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)I319.CB) [> 4.571 = 7.618 < 9.903] w=0.015 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)F460.CB) [> 4.522 = 7.537 < 9.798] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)D428.CB) [> 3.805 = 6.341 < 8.244] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)F460.CB) [> 3.228 = 5.380 < 6.995] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)T473.CB) [> 4.474 = 7.457 < 9.695] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)E471.CB) [> 2.659 = 4.432 < 5.762] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)T473.CB) [> 3.711 = 6.186 < 8.041] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)P461.CB) [> 3.982 = 6.637 < 8.629] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)P461.CB) [> 2.824 = 4.706 < 6.118] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)F460.CB) [> 3.839 = 6.398 < 8.318] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)L351.CB) [> 4.305 = 7.175 < 9.328] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)P461.CB) [> 4.749 = 7.915 < 10.290] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)F460.CB) [> 3.874 = 6.456 < 8.393] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)P472.CB) [> 2.902 = 4.836 < 6.287] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)P472.CB) [> 4.490 = 7.484 < 9.729] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)K415.CB) [> 1.449 = 2.414 < 3.139] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)S475.CB) [> 4.697 = 7.828 < 10.176] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)R474.CB) [> 3.635 = 6.059 < 7.877] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)T473.CB) [> 4.476 = 7.460 < 9.697] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)P472.CB) [> 3.687 = 6.145 < 7.988] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)A476.CB) [> 3.210 = 5.350 < 6.955] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)S475.CB) [> 2.497 = 4.161 < 5.409] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)R474.CB) [> 2.735 = 4.559 < 5.926] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)I538.CB) [> 4.082 = 6.803 < 8.844] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)A476.CB) [> 4.123 = 6.872 < 8.933] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)S475.CB) [> 4.515 = 7.525 < 9.782] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)A476.CB) [> 3.953 = 6.589 < 8.566] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)A476.CB) [> 3.650 = 6.084 < 7.909] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F530.CB, (T0547)S539.CB) [> 2.745 = 4.576 < 5.949] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I462.CB, (T0547)I538.CB) [> 3.710 = 6.184 < 8.039] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I462.CB, (T0547)I537.CB) [> 4.380 = 7.300 < 9.490] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I462.CB, (T0547)A536.CB) [> 3.005 = 5.009 < 6.511] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I462.CB, (T0547)T531.CB) [> 4.489 = 7.482 < 9.727] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I462.CB, (T0547)F530.CB) [> 3.581 = 5.968 < 7.758] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P461.CB, (T0547)S539.CB) [> 4.771 = 7.952 < 10.338] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)N443.CB) [> 3.277 = 5.462 < 7.100] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)V442.CB) [> 4.311 = 7.185 < 9.340] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)L441.CB) [> 2.879 = 4.798 < 6.237] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)L441.CB) [> 4.713 = 7.855 < 10.212] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)Y565.CB) [> 4.110 = 6.849 < 8.904] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)Q458.CB) [> 3.728 = 6.213 < 8.077] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)N459.CB) [> 3.736 = 6.226 < 8.094] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)Q458.CB) [> 4.529 = 7.548 < 9.812] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)I462.CB) [> 4.126 = 6.877 < 8.939] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)L563.CB) [> 4.152 = 6.920 < 8.997] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)A536.CB) [> 4.677 = 7.795 < 10.134] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)I481.CB) [> 4.727 = 7.878 < 10.241] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T482.CB, (T0547)Y491.CB) [> 4.280 = 7.134 < 9.274] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I481.CB, (T0547)Y491.CB) [> 3.660 = 6.101 < 7.931] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I481.CB, (T0547)S490.CB) [> 4.534 = 7.557 < 9.824] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)S492.CB) [> 2.838 = 4.729 < 6.148] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T482.CB, (T0547)S492.CB) [> 3.700 = 6.166 < 8.016] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)S381.CB) [> 3.962 = 6.603 < 8.583] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)S485.CB) [> 4.008 = 6.680 < 8.684] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)S485.CB) [> 2.331 = 3.885 < 5.051] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)T482.CB) [> 4.438 = 7.396 < 9.615] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)S492.CB) [> 4.490 = 7.483 < 9.728] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)T482.CB) [> 4.258 = 7.096 < 9.225] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)K357.CB) [> 4.798 = 7.997 < 10.396] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)I478.CB) [> 4.328 = 7.214 < 9.378] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)D480.CB) [> 3.680 = 6.133 < 7.972] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)W479.CB) [> 2.634 = 4.389 < 5.706] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)N270.CB) [> 4.527 = 7.544 < 9.807] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)N270.CB) [> 4.602 = 7.669 < 9.970] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)H231.CB) [> 4.590 = 7.651 < 9.946] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)G181.CA) [> 4.757 = 7.929 < 10.307] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)T156.CB) [> 4.388 = 7.313 < 9.507] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)L155.CB) [> 4.757 = 7.928 < 10.307] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L118.CB, (T0547)I551.CB) [> 2.702 = 4.503 < 5.854] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)H233.CB) [> 4.693 = 7.822 < 10.169] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)S492.CB) [> 2.584 = 4.306 < 5.598] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)T130.CB) [> 4.298 = 7.163 < 9.312] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A114.CB, (T0547)I551.CB) [> 3.576 = 5.960 < 7.748] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N105.CB, (T0547)P128.CB) [> 3.481 = 5.802 < 7.543] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Y104.CB, (T0547)A127.CB) [> 3.797 = 6.329 < 8.227] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)P426.CB) [> 3.840 = 6.400 < 8.320] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)K414.CB) [> 3.430 = 5.717 < 7.432] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L511.CB, (T0547)A536.CB) [> 4.608 = 7.680 < 9.984] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)D501.CB, (T0547)G512.CA) [> 3.295 = 5.492 < 7.139] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)D501.CB, (T0547)F510.CB) [> 3.204 = 5.340 < 6.942] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H500.CB, (T0547)L511.CB) [> 3.489 = 5.815 < 7.559] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H500.CB, (T0547)F510.CB) [> 4.284 = 7.140 < 9.282] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H500.CB, (T0547)Y509.CB) [> 3.947 = 6.577 < 8.551] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)I537.CB) [> 2.251 = 3.752 < 4.878] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)A536.CB) [> 4.194 = 6.991 < 9.088] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)F498.CB) [> 4.640 = 7.734 < 10.054] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)P496.CB) [> 4.161 = 6.934 < 9.014] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)K495.CB) [> 4.098 = 6.829 < 8.878] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)I537.CB) [> 3.784 = 6.306 < 8.198] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)L511.CB) [> 3.529 = 5.882 < 7.647] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)Y509.CB) [> 4.751 = 7.918 < 10.294] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)F498.CB) [> 3.645 = 6.075 < 7.897] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)L497.CB) [> 4.328 = 7.213 < 9.378] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)S539.CB) [> 3.419 = 5.698 < 7.408] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)L499.CB) [> 3.489 = 5.816 < 7.560] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L499.CB, (T0547)G512.CA) [> 3.640 = 6.067 < 7.887] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L499.CB, (T0547)L511.CB) [> 4.029 = 6.715 < 8.729] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F498.CB, (T0547)H527.CB) [> 3.985 = 6.641 < 8.633] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F498.CB, (T0547)G512.CA) [> 3.374 = 5.623 < 7.309] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F498.CB, (T0547)L511.CB) [> 3.017 = 5.028 < 6.536] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L497.CB, (T0547)S539.CB) [> 4.541 = 7.569 < 9.839] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P496.CB, (T0547)H527.CB) [> 4.227 = 7.045 < 9.158] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)F530.CB) [> 4.061 = 6.769 < 8.799] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)L511.CB) [> 4.397 = 7.329 < 9.527] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)F498.CB) [> 3.203 = 5.339 < 6.941] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)L497.CB) [> 4.794 = 7.990 < 10.387] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)P496.CB) [> 3.769 = 6.282 < 8.166] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)A476.CB) [> 4.286 = 7.144 < 9.287] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)T409.CB) [> 4.753 = 7.922 < 10.298] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)I489.CB) [> 3.518 = 5.863 < 7.622] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)K493.CB) [> 3.107 = 5.178 < 6.731] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)S492.CB) [> 4.701 = 7.834 < 10.185] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)K493.CB) [> 4.552 = 7.587 < 9.863] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)A536.CB) [> 4.201 = 7.002 < 9.103] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A416.CB, (T0547)H532.CB) [> 4.483 = 7.472 < 9.713] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A416.CB, (T0547)L430.CB) [> 2.521 = 4.202 < 5.463] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)D428.CB) [> 3.664 = 6.107 < 7.939] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)L600.CB) [> 4.417 = 7.362 < 9.570] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)L600.CB) [> 3.750 = 6.249 < 8.124] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)Y597.CB) [> 3.513 = 5.855 < 7.612] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)F599.CB) [> 4.593 = 7.655 < 9.952] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)L529.CB) [> 4.014 = 6.690 < 8.697] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)H532.CB) [> 3.345 = 5.574 < 7.247] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)T531.CB) [> 4.502 = 7.503 < 9.754] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)F530.CB) [> 3.555 = 5.924 < 7.702] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)H532.CB) [> 4.697 = 7.829 < 10.177] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)L362.CB) [> 4.104 = 6.840 < 8.892] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)I538.CB) [> 4.017 = 6.696 < 8.704] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)F510.CB) [> 4.395 = 7.324 < 9.522] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)L411.CB) [> 4.551 = 7.585 < 9.860] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)I412.CB) [> 3.388 = 5.646 < 7.340] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)H532.CB) [> 3.922 = 6.537 < 8.498] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)T531.CB) [> 4.551 = 7.585 < 9.861] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A81.CB, (T0547)Y104.CB) [> 4.099 = 6.832 < 8.882] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)Y104.CB) [> 2.477 = 4.129 < 5.368] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)Y104.CB) [> 2.835 = 4.726 < 6.143] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H233.CB, (T0547)A276.CB) [> 4.109 = 6.848 < 8.902] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)W194.CB, (T0547)I254.CB) [> 4.552 = 7.587 < 9.864] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)W194.CB) [> 2.529 = 4.215 < 5.480] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)V325.CB) [> 4.063 = 6.771 < 8.802] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)Y509.CB) [> 3.759 = 6.265 < 8.145] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)N508.CB) [> 3.355 = 5.592 < 7.270] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)Y509.CB) [> 3.487 = 5.812 < 7.555] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)E507.CB) [> 4.197 = 6.994 < 9.093] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)F498.CB) [> 4.153 = 6.922 < 8.999] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)L499.CB) [> 3.729 = 6.215 < 8.080] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)S539.CB) [> 3.005 = 5.008 < 6.510] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)S539.CB) [> 3.734 = 6.223 < 8.090] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)I538.CB) [> 2.838 = 4.730 < 6.149] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)F510.CB) [> 3.298 = 5.497 < 7.147] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)L529.CB) [> 2.962 = 4.937 < 6.418] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)N528.CB) [> 4.268 = 7.113 < 9.246] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)G512.CA) [> 4.066 = 6.777 < 8.810] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)G512.CA) [> 4.028 = 6.714 < 8.728] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)L511.CB) [> 3.879 = 6.465 < 8.405] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)F510.CB) [> 4.418 = 7.363 < 9.572] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)Y509.CB) [> 2.452 = 4.087 < 5.313] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)F510.CB) [> 3.378 = 5.629 < 7.318] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)Y509.CB) [> 4.242 = 7.070 < 9.191] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)F530.CB) [> 4.069 = 6.782 < 8.816] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)G512.CA) [> 3.904 = 6.507 < 8.459] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)L511.CB) [> 2.822 = 4.703 < 6.113] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)F510.CB) [> 4.106 = 6.844 < 8.897] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)F498.CB) [> 4.790 = 7.984 < 10.379] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)G512.CA) [> 2.882 = 4.803 < 6.244] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)L511.CB) [> 4.008 = 6.681 < 8.685] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)V87.CB) [> 4.515 = 7.525 < 9.782] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)V442.CB) [> 3.802 = 6.336 < 8.237] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)L441.CB) [> 2.471 = 4.118 < 5.354] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)K357.CB) [> 4.307 = 7.179 < 9.332] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)A330.CB) [> 4.469 = 7.449 < 9.683] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)L441.CB) [> 4.753 = 7.922 < 10.298] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)L441.CB) [> 3.719 = 6.198 < 8.058] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)L441.CB) [> 2.341 = 3.901 < 5.072] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V397.CB, (T0547)H532.CB) [> 3.988 = 6.647 < 8.641] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V397.CB, (T0547)T531.CB) [> 4.625 = 7.709 < 10.022] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)D428.CB) [> 3.776 = 6.294 < 8.182] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)H532.CB) [> 4.442 = 7.404 < 9.625] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)D428.CB) [> 3.873 = 6.455 < 8.391] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)F530.CB) [> 4.548 = 7.580 < 9.854] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)D428.CB) [> 4.328 = 7.213 < 9.376] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)L560.CB) [> 4.764 = 7.940 < 10.322] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)F318.CB) [> 4.721 = 7.869 < 10.230] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)T531.CB) [> 3.396 = 5.660 < 7.358] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I489.CB, (T0547)S539.CB) [> 4.738 = 7.897 < 10.266] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I489.CB, (T0547)I538.CB) [> 3.781 = 6.302 < 8.193] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I489.CB, (T0547)I537.CB) [> 4.241 = 7.068 < 9.188] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I489.CB, (T0547)A536.CB) [> 3.341 = 5.568 < 7.239] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A476.CB, (T0547)S539.CB) [> 3.496 = 5.827 < 7.575] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A476.CB, (T0547)I538.CB) [> 2.517 = 4.196 < 5.454] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I567.CB, (T0547)Y597.CB) [> 3.395 = 5.658 < 7.355] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)D566.CB, (T0547)F599.CB) [> 4.676 = 7.793 < 10.131] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Y565.CB, (T0547)F599.CB) [> 3.734 = 6.224 < 8.091] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I556.CB, (T0547)L600.CB) [> 4.160 = 6.934 < 9.014] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)A476.CB) [> 3.877 = 6.461 < 8.400] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)S475.CB) [> 2.974 = 4.956 < 6.443] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)A476.CB) [> 3.607 = 6.011 < 7.814] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)R474.CB) [> 3.413 = 5.689 < 7.396] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)A476.CB) [> 4.250 = 7.083 < 9.209] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)R474.CB) [> 4.057 = 6.762 < 8.790] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)A476.CB) [> 3.030 = 5.050 < 6.565] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)I302.CB) [> 2.324 = 3.873 < 5.035] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)I302.CB) [> 3.829 = 6.382 < 8.297] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)I319.CB) [> 4.797 = 7.995 < 10.393] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I567.CB, (T0547)L600.CB) [> 3.699 = 6.165 < 8.015] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)I269.CB) [> 4.156 = 6.927 < 9.005] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)L206.CB) [> 3.516 = 5.860 < 7.618] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)S202.CB) [> 4.664 = 7.773 < 10.105] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)R183.CB, (T0547)S202.CB) [> 4.551 = 7.585 < 9.861] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)S197.CB, (T0547)Y366.CB) [> 4.144 = 6.906 < 8.978] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A195.CB, (T0547)L362.CB) [> 4.145 = 6.908 < 8.981] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)S202.CB) [> 4.124 = 6.873 < 8.935] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)D480.CB) [> 4.635 = 7.725 < 10.043] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)L456.CB) [> 4.684 = 7.806 < 10.148] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)N289.CB) [> 4.481 = 7.468 < 9.708] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)L560.CB) [> 4.587 = 7.644 < 9.938] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)D484.CB) [> 2.833 = 4.722 < 6.139] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)I481.CB) [> 2.674 = 4.457 < 5.795] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)F513.CB) [> 2.702 = 4.503 < 5.854] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)G512.CA) [> 4.420 = 7.367 < 9.577] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)L430.CB) [> 4.768 = 7.947 < 10.331] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)F513.CB) [> 3.691 = 6.152 < 7.998] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)G512.CA) [> 2.684 = 4.474 < 5.816] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)D480.CB) [> 2.695 = 4.491 < 5.839] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)R474.CB) [> 3.358 = 5.596 < 7.275] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)I462.CB) [> 4.700 = 7.833 < 10.183] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)N459.CB) [> 4.613 = 7.688 < 9.994] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)G421.CA) [> 3.591 = 5.985 < 7.780] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)D484.CB) [> 3.584 = 5.974 < 7.766] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)L515.CB) [> 4.179 = 6.964 < 9.054] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)D480.CB) [> 3.373 = 5.622 < 7.309] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)L430.CB) [> 4.281 = 7.136 < 9.277] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)L515.CB) [> 3.336 = 5.560 < 7.228] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)F514.CB) [> 4.665 = 7.774 < 10.107] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)F318.CB) [> 4.332 = 7.220 < 9.386] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)L271.CB) [> 3.984 = 6.640 < 8.632] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)I269.CB) [> 4.641 = 7.735 < 10.055] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)F318.CB) [> 4.669 = 7.781 < 10.116] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)H231.CB) [> 4.639 = 7.732 < 10.052] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)L271.CB) [> 4.495 = 7.491 < 9.739] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)L271.CB) [> 4.348 = 7.247 < 9.421] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)L271.CB) [> 3.990 = 6.650 < 8.645] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)I269.CB) [> 4.674 = 7.790 < 10.127] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)T482.CB) [> 4.571 = 7.618 < 9.904] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)D480.CB) [> 4.105 = 6.842 < 8.894] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)V442.CB) [> 3.717 = 6.196 < 8.054] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)R474.CB) [> 4.667 = 7.779 < 10.113] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)D480.CB) [> 4.145 = 6.908 < 8.981] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)A476.CB) [> 4.202 = 7.003 < 9.104] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)I538.CB) [> 3.733 = 6.222 < 8.089] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F513.CB, (T0547)I550.CB) [> 3.801 = 6.335 < 8.235] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F513.CB, (T0547)G549.CA) [> 4.407 = 7.345 < 9.549] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F513.CB, (T0547)V547.CB) [> 3.246 = 5.409 < 7.032] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L515.CB, (T0547)V547.CB) [> 3.508 = 5.847 < 7.601] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L515.CB, (T0547)E546.CB) [> 3.867 = 6.444 < 8.378] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L515.CB, (T0547)Y545.CB) [> 3.086 = 5.143 < 6.686] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L515.CB, (T0547)G544.CA) [> 4.216 = 7.026 < 9.134] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F514.CB, (T0547)I551.CB) [> 3.710 = 6.184 < 8.039] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F514.CB, (T0547)G549.CA) [> 2.666 = 4.443 < 5.776] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F514.CB, (T0547)V547.CB) [> 4.005 = 6.675 < 8.678] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F513.CB, (T0547)I551.CB) [> 4.574 = 7.624 < 9.911] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L456.CB, (T0547)D469.CB) [> 3.408 = 5.680 < 7.383] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)W454.CB, (T0547)L468.CB) [> 4.288 = 7.146 < 9.290] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)W454.CB, (T0547)R467.CB) [> 3.310 = 5.517 < 7.172] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F453.CB, (T0547)L468.CB) [> 3.711 = 6.184 < 8.039] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)D452.CB, (T0547)R467.CB) [> 3.397 = 5.662 < 7.361] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I462.CB, (T0547)F513.CB) [> 4.483 = 7.471 < 9.712] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)H410.CB) [> 4.605 = 7.675 < 9.977] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)T409.CB) [> 3.548 = 5.914 < 7.688] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)I407.CB) [> 3.943 = 6.572 < 8.544] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)D428.CB) [> 4.309 = 7.182 < 9.336] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)P426.CB) [> 4.500 = 7.500 < 9.750] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)G421.CA) [> 4.437 = 7.395 < 9.614] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)I407.CB) [> 3.122 = 5.204 < 6.765] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)D428.CB) [> 2.609 = 4.348 < 5.652] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)K414.CB) [> 4.559 = 7.598 < 9.877] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)I319.CB) [> 3.773 = 6.289 < 8.176] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)E320.CB) [> 4.688 = 7.813 < 10.158] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)D428.CB) [> 4.646 = 7.743 < 10.066] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)D428.CB) [> 3.891 = 6.485 < 8.430] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)L248.CB) [> 4.461 = 7.435 < 9.666] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)L244.CB) [> 3.346 = 5.576 < 7.249] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)L244.CB) [> 2.325 = 3.876 < 5.038] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)L248.CB) [> 3.397 = 5.661 < 7.359] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I145.CB, (T0547)R173.CB) [> 4.240 = 7.067 < 9.187] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)G143.CA, (T0547)R173.CB) [> 3.984 = 6.641 < 8.633] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)L523.CB) [> 3.781 = 6.301 < 8.192] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)H500.CB) [> 3.442 = 5.737 < 7.459] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)T482.CB) [> 3.956 = 6.593 < 8.571] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)E406.CB, (T0547)L497.CB) [> 3.514 = 5.857 < 7.615] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A405.CB, (T0547)L497.CB) [> 3.643 = 6.072 < 7.894] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)H500.CB) [> 4.229 = 7.049 < 9.163] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)V502.CB) [> 3.575 = 5.958 < 7.745] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)V516.CB) [> 4.246 = 7.077 < 9.200] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)V516.CB) [> 3.717 = 6.195 < 8.053] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)G517.CA, (T0547)T559.CB) [> 4.088 = 6.814 < 8.858] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)G517.CA, (T0547)I556.CB) [> 2.648 = 4.414 < 5.738] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)G517.CA, (T0547)S555.CB) [> 4.748 = 7.913 < 10.287] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V516.CB, (T0547)T559.CB) [> 2.661 = 4.435 < 5.765] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V516.CB, (T0547)I556.CB) [> 2.398 = 3.997 < 5.196] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T482.CB, (T0547)L497.CB) [> 3.126 = 5.210 < 6.772] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I481.CB, (T0547)H500.CB) [> 4.266 = 7.110 < 9.242] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L523.CB, (T0547)T559.CB) [> 4.669 = 7.781 < 10.116] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L523.CB, (T0547)Q554.CB) [> 2.785 = 4.642 < 6.034] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Y519.CB, (T0547)T559.CB) [> 2.838 = 4.730 < 6.148] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Y519.CB, (T0547)I556.CB) [> 4.546 = 7.577 < 9.851] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)V516.CB) [> 3.157 = 5.262 < 6.841] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)A518.CB) [> 2.570 = 4.284 < 5.569] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)L430.CB) [> 4.281 = 7.135 < 9.275] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)Y519.CB) [> 3.462 = 5.770 < 7.500] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)A518.CB) [> 3.995 = 6.658 < 8.655] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)G517.CA) [> 4.626 = 7.710 < 10.023] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)V516.CB) [> 3.135 = 5.226 < 6.793] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)Y519.CB) [> 4.687 = 7.811 < 10.154] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)V502.CB) [> 3.484 = 5.806 < 7.548] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)L430.CB) [> 4.758 = 7.929 < 10.308] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)D480.CB) [> 3.546 = 5.910 < 7.683] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)I481.CB) [> 3.349 = 5.582 < 7.256] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)W479.CB) [> 3.079 = 5.132 < 6.672] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)W479.CB) [> 4.598 = 7.663 < 9.962] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)I538.CB) [> 4.304 = 7.173 < 9.324] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)Y519.CB) [> 4.496 = 7.494 < 9.742] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)A518.CB) [> 2.758 = 4.597 < 5.976] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)I481.CB) [> 3.565 = 5.942 < 7.724] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K17.CB, (T0547)Y122.CB) [> 4.084 = 6.806 < 8.848] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I16.CB, (T0547)K95.CB) [> 3.925 = 6.541 < 8.504] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I16.CB, (T0547)G92.CA) [> 4.746 = 7.910 < 10.283] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I16.CB, (T0547)P29.CB) [> 3.552 = 5.919 < 7.695] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I16.CB, (T0547)K27.CB) [> 4.184 = 6.973 < 9.065] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I15.CB, (T0547)A30.CB) [> 2.933 = 4.888 < 6.354] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)E26.CB, (T0547)L557.CB) [> 3.618 = 6.029 < 7.838] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)I481.CB) [> 4.340 = 7.233 < 9.403] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)H53.CB) [> 4.338 = 7.231 < 9.400] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)I412.CB) [> 4.647 = 7.745 < 10.068] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V21.CB, (T0547)I407.CB) [> 4.768 = 7.946 < 10.330] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)F513.CB) [> 3.318 = 5.529 < 7.188] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)D480.CB) [> 4.539 = 7.565 < 9.834] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)F444.CB) [> 4.483 = 7.472 < 9.714] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)A536.CB) [> 4.580 = 7.633 < 9.923] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)D428.CB) [> 4.788 = 7.980 < 10.374] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A405.CB, (T0547)F444.CB) [> 4.110 = 6.850 < 8.905] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)D7.CB, (T0547)E546.CB) [> 2.882 = 4.803 < 6.243] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I6.CB, (T0547)V547.CB) [> 2.470 = 4.117 < 5.352] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I6.CB, (T0547)E546.CB) [> 4.205 = 7.008 < 9.111] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I6.CB, (T0547)G42.CA) [> 3.167 = 5.278 < 6.861] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)G5.CA, (T0547)E546.CB) [> 3.877 = 6.462 < 8.400] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L560.CB, (T0547)I570.CB) [> 2.679 = 4.465 < 5.805] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T559.CB, (T0547)I570.CB) [> 3.218 = 5.364 < 6.973] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)Y545.CB) [> 2.552 = 4.253 < 5.529] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)L515.CB) [> 3.753 = 6.255 < 8.131] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)F513.CB) [> 4.401 = 7.336 < 9.536] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)I407.CB) [> 4.768 = 7.947 < 10.332] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)V442.CB) [> 3.285 = 5.475 < 7.117] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)I538.CB) [> 4.321 = 7.202 < 9.362] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)F444.CB) [> 3.771 = 6.286 < 8.172] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)N443.CB) [> 2.748 = 4.580 < 5.954] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)V442.CB) [> 3.374 = 5.623 < 7.309] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)L441.CB) [> 2.504 = 4.174 < 5.426] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)F444.CB) [> 3.155 = 5.259 < 6.836] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)N443.CB) [> 4.514 = 7.523 < 9.779] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I550.CB, (T0547)I570.CB) [> 3.895 = 6.491 < 8.438] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)V442.CB) [> 3.568 = 5.947 < 7.732] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)I538.CB) [> 3.880 = 6.467 < 8.407] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)S539.CB) [> 4.681 = 7.802 < 10.143] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)I538.CB) [> 2.868 = 4.780 < 6.214] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)P426.CB) [> 4.035 = 6.724 < 8.742] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)D486.CB) [> 4.079 = 6.798 < 8.838] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)A214.CB) [> 4.459 = 7.432 < 9.661] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)L430.CB) [> 4.227 = 7.044 < 9.158] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)I537.CB) [> 3.962 = 6.604 < 8.585] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)E488.CB, (T0547)T531.CB) [> 3.932 = 6.554 < 8.520] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K495.CB, (T0547)D562.CB) [> 3.154 = 5.256 < 6.833] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P496.CB, (T0547)I538.CB) [> 4.700 = 7.833 < 10.182] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H500.CB, (T0547)I537.CB) [> 3.646 = 6.077 < 7.900] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)L49.CB) [> 3.463 = 5.772 < 7.503] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)H410.CB) [> 4.265 = 7.108 < 9.240] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N18.CB, (T0547)A374.CB) [> 4.593 = 7.655 < 9.952] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I15.CB, (T0547)N24.CB) [> 4.734 = 7.890 < 10.257] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F14.CB, (T0547)N24.CB) [> 3.535 = 5.891 < 7.659] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)V584.CB) [> 1.654 = 2.756 < 3.583] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)N575.CB) [> 4.767 = 7.944 < 10.327] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)L574.CB) [> 1.928 = 3.213 < 4.177] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)I573.CB) [> 4.645 = 7.742 < 10.065] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)M571.CB) [> 4.748 = 7.913 < 10.287] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)I570.CB) [> 1.889 = 3.148 < 4.093] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)A569.CB) [> 4.607 = 7.678 < 9.981] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)L515.CB) [> 2.971 = 4.951 < 6.437] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)F514.CB) [> 4.362 = 7.271 < 9.452] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)L574.CB) [> 4.147 = 6.911 < 8.984] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)I570.CB) [> 4.142 = 6.903 < 8.974] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)F513.CB) [> 3.435 = 5.725 < 7.442] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)I573.CB) [> 3.161 = 5.269 < 6.850] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)R577.CB) [> 3.164 = 5.273 < 6.854] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)I578.CB) [> 3.451 = 5.752 < 7.477] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)S581.CB) [> 4.665 = 7.775 < 10.108] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)I592.CB) [> 3.451 = 5.752 < 7.477] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)S581.CB) [> 4.574 = 7.623 < 9.910] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)V21.CB, (T0547)A476.CB) [> 2.191 = 3.651 < 4.746] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)I34.CB) [> 4.784 = 7.974 < 10.366] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I23.CB, (T0547)M571.CB) [> 4.214 = 7.024 < 9.131] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)F514.CB) [> 3.365 = 5.608 < 7.291] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)L511.CB) [> 4.404 = 7.340 < 9.541] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)L511.CB) [> 3.199 = 5.331 < 6.931] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)A476.CB) [> 4.767 = 7.945 < 10.328] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)A476.CB) [> 3.435 = 5.725 < 7.442] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)L511.CB) [> 4.602 = 7.669 < 9.970] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I478.CB, (T0547)M571.CB) [> 3.321 = 5.535 < 7.195] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)I478.CB, (T0547)L574.CB) [> 4.773 = 7.954 < 10.341] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)D480.CB, (T0547)L574.CB) [> 3.168 = 5.280 < 6.863] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)E60.CB, (T0547)R577.CB) [> 4.490 = 7.484 < 9.729] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N96.CB, (T0547)L574.CB) [> 4.273 = 7.122 < 9.259] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N96.CB, (T0547)I578.CB) [> 4.256 = 7.094 < 9.222] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)N96.CB, (T0547)I592.CB) [> 4.256 = 7.094 < 9.222] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)K99.CB, (T0547)I578.CB) [> 3.488 = 5.814 < 7.558] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L100.CB, (T0547)I578.CB) [> 3.455 = 5.759 < 7.487] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L100.CB, (T0547)I592.CB) [> 3.455 = 5.759 < 7.487] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L100.CB, (T0547)S581.CB) [> 2.820 = 4.699 < 6.109] w=0.013 to align_constraints # Constraint # added constraint: constraint((T0547)L155.CB, (T0547)R183.CB) [> 3.930 = 6.549 < 8.514] w=0.004 to align_constraints # Constraint # added constraint: constraint((T0547)L155.CB, (T0547)H231.CB) [> 2.742 = 4.569 < 5.940] w=0.004 to align_constraints # Constraint # added constraint: constraint((T0547)L155.CB, (T0547)N270.CB) [> 3.170 = 5.283 < 6.868] w=0.004 to align_constraints # Constraint # added constraint: constraint((T0547)E109.CB, (T0547)L155.CB) [> 4.514 = 7.523 < 9.780] w=0.003 to align_constraints # Constraint # added constraint: constraint((T0547)L85.CB, (T0547)N132.CB) [> 4.345 = 7.242 < 9.414] w=0.001 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)E109.CB) [> 4.422 = 7.370 < 9.581] w=0.001 to align_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)A110.CB) [> 3.518 = 5.864 < 7.623] w=0.001 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)N270.CB) [> 4.636 = 7.727 < 10.046] w=0.001 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)N132.CB) [> 4.596 = 7.659 < 9.957] w=0.001 to align_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)T130.CB) [> 3.599 = 5.998 < 7.797] w=0.001 to align_constraints # Constraint # added constraint: constraint((T0547)A81.CB, (T0547)L108.CB) [> 4.139 = 6.898 < 8.968] w=0.001 to align_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)V82.CB) [> 3.698 = 6.163 < 8.012] w=0.001 to align_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)P84.CB) [> 4.365 = 7.275 < 9.457] w=0.001 to align_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)V82.CB) [> 4.752 = 7.921 < 10.297] w=0.001 to align_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)G235.CA) [> 3.305 = 5.508 < 7.160] w=0.001 to align_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)G235.CA) [> 4.597 = 7.662 < 9.960] w=0.001 to align_constraints # future Constraint commands -> align_bonus # future HelixConstraint commands -> align_bonus # future StrandConstraint commands -> align_bonus # future SheetConstraint commands -> align_bonus # future Hbond commands -> align_bonus # future SSbond commands -> align_bonus # reading script from file align_bonus.constraints # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)P128.CB) [> 3.770 = 6.284 < 8.169] w=1.000 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)L108.CB) [> 3.352 = 5.586 < 7.262] w=1.000 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)I129.CB) [> 3.811 = 6.352 < 8.257] w=0.999 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)E109.CB) [> 2.509 = 4.181 < 5.435] w=0.999 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)E109.CB) [> 4.034 = 6.724 < 8.741] w=0.999 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)L97.CB) [> 2.860 = 4.767 < 6.197] w=0.999 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)A119.CB) [> 3.782 = 6.303 < 8.194] w=0.997 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)A119.CB) [> 3.263 = 5.438 < 7.069] w=0.997 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)H329.CB) [> 2.934 = 4.889 < 6.356] w=0.996 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L54.CB, (T0547)H329.CB) [> 2.519 = 4.198 < 5.457] w=0.996 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)H329.CB) [> 3.136 = 5.227 < 6.795] w=0.996 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)A330.CB) [> 3.180 = 5.299 < 6.889] w=0.996 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)H329.CB) [> 3.416 = 5.693 < 7.401] w=0.996 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I333.CB) [> 3.218 = 5.364 < 6.973] w=0.996 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)I129.CB) [> 3.305 = 5.509 < 7.161] w=0.985 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)T130.CB) [> 4.206 = 7.009 < 9.112] w=0.985 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)A214.CB) [> 3.863 = 6.439 < 8.370] w=0.969 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)P128.CB) [> 2.977 = 4.962 < 6.450] w=0.960 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)G107.CA) [> 3.844 = 6.407 < 8.329] w=0.960 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)L97.CB) [> 3.721 = 6.201 < 8.061] w=0.960 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)A119.CB) [> 3.640 = 6.066 < 7.886] w=0.960 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)I230.CB) [> 3.897 = 6.494 < 8.443] w=0.960 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)T228.CB) [> 3.242 = 5.404 < 7.025] w=0.960 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)L108.CB) [> 3.884 = 6.474 < 8.416] w=0.959 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)N96.CB) [> 3.505 = 5.841 < 7.594] w=0.959 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)L118.CB) [> 3.993 = 6.655 < 8.651] w=0.959 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L108.CB) [> 3.672 = 6.120 < 7.956] w=0.959 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)F93.CB) [> 3.900 = 6.501 < 8.451] w=0.959 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)E109.CB) [> 2.854 = 4.757 < 6.184] w=0.958 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L332.CB) [> 3.402 = 5.670 < 7.371] w=0.956 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)V331.CB) [> 2.922 = 4.870 < 6.331] w=0.956 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I333.CB) [> 3.786 = 6.309 < 8.202] w=0.956 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)H329.CB) [> 4.228 = 7.046 < 9.160] w=0.956 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I269.CB) [> 3.336 = 5.559 < 7.227] w=0.947 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)I129.CB) [> 4.222 = 7.036 < 9.147] w=0.946 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)V131.CB) [> 3.444 = 5.740 < 7.462] w=0.946 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)N132.CB) [> 3.075 = 5.125 < 6.662] w=0.946 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)A330.CB) [> 3.546 = 5.909 < 7.682] w=0.943 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L332.CB) [> 4.497 = 7.495 < 9.743] w=0.943 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)F227.CB) [> 3.705 = 6.175 < 8.028] w=0.934 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)A214.CB) [> 3.661 = 6.101 < 7.932] w=0.934 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)L218.CB) [> 3.703 = 6.172 < 8.023] w=0.934 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L54.CB, (T0547)N328.CB) [> 3.794 = 6.323 < 8.219] w=0.930 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)A334.CB) [> 2.849 = 4.748 < 6.173] w=0.930 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)G181.CA) [> 3.707 = 6.179 < 8.032] w=0.920 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)H231.CB) [> 3.680 = 6.133 < 7.973] w=0.920 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)L100.CB) [> 3.325 = 5.541 < 7.204] w=0.920 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)F227.CB) [> 3.566 = 5.943 < 7.726] w=0.920 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)R183.CB) [> 2.978 = 4.963 < 6.452] w=0.920 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I230.CB) [> 3.210 = 5.350 < 6.955] w=0.920 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)I230.CB) [> 3.674 = 6.123 < 7.960] w=0.920 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)G107.CA) [> 2.744 = 4.573 < 5.944] w=0.919 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)V131.CB) [> 3.460 = 5.766 < 7.496] w=0.919 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)T130.CB) [> 3.376 = 5.626 < 7.314] w=0.919 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)A81.CB) [> 4.158 = 6.930 < 9.009] w=0.919 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)A330.CB) [> 4.098 = 6.830 < 8.879] w=0.916 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)V331.CB) [> 4.392 = 7.320 < 9.516] w=0.916 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)V325.CB) [> 3.796 = 6.327 < 8.225] w=0.916 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)V325.CB) [> 3.200 = 5.334 < 6.934] w=0.916 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)S321.CB) [> 3.940 = 6.567 < 8.537] w=0.916 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)G322.CA) [> 3.793 = 6.322 < 8.218] w=0.916 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)S321.CB) [> 3.935 = 6.559 < 8.527] w=0.916 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)G322.CA) [> 2.535 = 4.226 < 5.493] w=0.916 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I333.CB) [> 4.101 = 6.836 < 8.887] w=0.916 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)L206.CB) [> 3.772 = 6.286 < 8.172] w=0.907 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A251.CB) [> 3.252 = 5.421 < 7.047] w=0.907 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)M149.CB) [> 3.900 = 6.500 < 8.450] w=0.906 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)Q226.CB) [> 3.789 = 6.315 < 8.209] w=0.894 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)T156.CB) [> 3.723 = 6.205 < 8.067] w=0.894 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)L217.CB) [> 3.402 = 5.670 < 7.371] w=0.894 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)A81.CB) [> 3.562 = 5.937 < 7.718] w=0.892 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)S321.CB) [> 3.824 = 6.374 < 8.286] w=0.890 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I180.CB) [> 3.181 = 5.301 < 6.892] w=0.880 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L182.CB) [> 3.457 = 5.761 < 7.489] w=0.880 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)H231.CB) [> 4.231 = 7.051 < 9.166] w=0.880 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)H231.CB) [> 3.073 = 5.122 < 6.659] w=0.880 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)F232.CB) [> 4.210 = 7.017 < 9.122] w=0.880 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)H231.CB) [> 4.243 = 7.072 < 9.193] w=0.880 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)F232.CB) [> 3.111 = 5.185 < 6.741] w=0.880 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)N124.CB) [> 3.370 = 5.617 < 7.302] w=0.880 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)G181.CA) [> 3.139 = 5.232 < 6.802] w=0.880 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)N270.CB) [> 2.585 = 4.309 < 5.602] w=0.880 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)P178.CB) [> 3.532 = 5.886 < 7.652] w=0.880 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)G205.CA) [> 2.676 = 4.461 < 5.799] w=0.880 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)G107.CA) [> 4.173 = 6.956 < 9.042] w=0.879 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)L108.CB) [> 4.369 = 7.281 < 9.465] w=0.879 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)Y106.CB) [> 3.350 = 5.584 < 7.259] w=0.878 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)I319.CB) [> 3.943 = 6.572 < 8.544] w=0.878 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)Y106.CB) [> 4.103 = 6.838 < 8.889] w=0.877 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)T156.CB) [> 3.929 = 6.548 < 8.512] w=0.876 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)V325.CB) [> 3.649 = 6.081 < 7.906] w=0.876 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)F324.CB) [> 3.790 = 6.316 < 8.211] w=0.876 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)A326.CB) [> 4.020 = 6.700 < 8.710] w=0.876 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)Y122.CB) [> 3.253 = 5.422 < 7.049] w=0.876 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)L206.CB) [> 3.698 = 6.163 < 8.012] w=0.867 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)F204.CB) [> 3.385 = 5.642 < 7.335] w=0.867 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)T156.CB) [> 3.913 = 6.521 < 8.477] w=0.867 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)T156.CB) [> 3.234 = 5.390 < 7.008] w=0.867 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)A268.CB) [> 3.002 = 5.003 < 6.504] w=0.867 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)A214.CB) [> 4.017 = 6.695 < 8.703] w=0.867 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)F318.CB) [> 3.105 = 5.175 < 6.728] w=0.866 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)F324.CB) [> 4.050 = 6.750 < 8.775] w=0.863 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)Y255.CB) [> 3.626 = 6.044 < 7.857] w=0.854 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L206.CB) [> 3.473 = 5.788 < 7.524] w=0.854 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A214.CB) [> 3.603 = 6.006 < 7.807] w=0.854 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)T409.CB) [> 3.479 = 5.798 < 7.538] w=0.850 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L266.CB) [> 3.584 = 5.973 < 7.764] w=0.850 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)V325.CB) [> 3.487 = 5.811 < 7.555] w=0.850 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G205.CA) [> 2.723 = 4.539 < 5.901] w=0.841 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I129.CB) [> 3.767 = 6.279 < 8.163] w=0.841 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I166.CB) [> 4.140 = 6.899 < 8.969] w=0.841 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)I269.CB) [> 4.365 = 7.274 < 9.457] w=0.841 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)R183.CB) [> 3.001 = 5.002 < 6.502] w=0.841 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)R183.CB) [> 4.031 = 6.719 < 8.735] w=0.841 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)F318.CB) [> 3.659 = 6.098 < 7.927] w=0.839 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)I319.CB) [> 3.500 = 5.834 < 7.584] w=0.838 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)N124.CB) [> 3.723 = 6.205 < 8.066] w=0.837 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)A330.CB) [> 4.548 = 7.580 < 9.854] w=0.837 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)H410.CB) [> 3.010 = 5.017 < 6.522] w=0.837 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)T207.CB) [> 3.345 = 5.575 < 7.248] w=0.827 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)K267.CB) [> 3.581 = 5.968 < 7.759] w=0.827 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L271.CB) [> 3.549 = 5.915 < 7.690] w=0.827 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)L408.CB) [> 3.386 = 5.643 < 7.336] w=0.823 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)L408.CB) [> 4.044 = 6.741 < 8.763] w=0.823 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)H329.CB) [> 4.513 = 7.522 < 9.778] w=0.823 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)L217.CB) [> 3.713 = 6.188 < 8.044] w=0.814 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)I254.CB) [> 3.617 = 6.029 < 7.838] w=0.814 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L206.CB) [> 3.928 = 6.546 < 8.510] w=0.814 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)L206.CB) [> 4.052 = 6.753 < 8.779] w=0.814 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)A247.CB) [> 3.277 = 5.461 < 7.100] w=0.811 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L244.CB) [> 3.719 = 6.198 < 8.057] w=0.811 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)I350.CB) [> 3.257 = 5.428 < 7.057] w=0.810 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)L411.CB) [> 3.663 = 6.105 < 7.936] w=0.810 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)F318.CB) [> 2.762 = 4.604 < 5.985] w=0.810 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)E213.CB) [> 3.946 = 6.577 < 8.550] w=0.810 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G205.CA) [> 3.659 = 6.098 < 7.927] w=0.801 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G205.CA) [> 2.564 = 4.274 < 5.556] w=0.801 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)F232.CB) [> 4.466 = 7.443 < 9.675] w=0.801 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)N270.CB) [> 4.257 = 7.096 < 9.224] w=0.801 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)N96.CB) [> 3.792 = 6.321 < 8.217] w=0.801 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)L108.CB) [> 4.616 = 7.694 < 10.002] w=0.799 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)D316.CB) [> 3.909 = 6.515 < 8.470] w=0.799 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)F318.CB) [> 4.277 = 7.128 < 9.266] w=0.799 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I333.CB) [> 4.615 = 7.692 < 10.000] w=0.797 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L332.CB) [> 4.572 = 7.620 < 9.906] w=0.797 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)P335.CB) [> 3.400 = 5.667 < 7.367] w=0.797 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)L182.CB) [> 4.436 = 7.394 < 9.612] w=0.797 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I180.CB) [> 4.428 = 7.380 < 9.594] w=0.797 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)I319.CB) [> 3.327 = 5.544 < 7.208] w=0.797 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)E320.CB) [> 2.930 = 4.884 < 6.349] w=0.797 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)E320.CB) [> 2.984 = 4.974 < 6.466] w=0.797 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)P335.CB) [> 4.255 = 7.092 < 9.220] w=0.797 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)L349.CB) [> 3.525 = 5.875 < 7.637] w=0.797 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)K348.CB) [> 4.134 = 6.890 < 8.957] w=0.797 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L218.CB) [> 3.816 = 6.360 < 8.268] w=0.788 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)F204.CB) [> 3.604 = 6.006 < 7.808] w=0.788 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)A251.CB) [> 3.894 = 6.491 < 8.438] w=0.788 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)I269.CB) [> 3.941 = 6.568 < 8.539] w=0.788 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)G133.CA) [> 3.285 = 5.475 < 7.117] w=0.786 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)I317.CB) [> 3.740 = 6.233 < 8.103] w=0.786 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)I319.CB) [> 4.243 = 7.071 < 9.193] w=0.785 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)G272.CA) [> 4.240 = 7.067 < 9.187] w=0.785 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)S321.CB) [> 3.624 = 6.039 < 7.851] w=0.784 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)S403.CB) [> 4.064 = 6.773 < 8.805] w=0.784 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)E406.CB) [> 4.194 = 6.990 < 9.086] w=0.784 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)I407.CB) [> 3.703 = 6.171 < 8.022] w=0.784 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)N404.CB) [> 3.483 = 5.805 < 7.547] w=0.784 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)A405.CB) [> 3.733 = 6.222 < 8.089] w=0.784 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)E406.CB) [> 3.071 = 5.119 < 6.654] w=0.784 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)L408.CB) [> 4.058 = 6.764 < 8.793] w=0.784 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A247.CB) [> 3.555 = 5.925 < 7.702] w=0.784 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)F204.CB) [> 4.020 = 6.700 < 8.710] w=0.774 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L211.CB) [> 3.595 = 5.992 < 7.790] w=0.774 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)L266.CB) [> 3.595 = 5.992 < 7.790] w=0.774 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)T130.CB) [> 4.472 = 7.453 < 9.690] w=0.774 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)L206.CB) [> 3.760 = 6.267 < 8.147] w=0.774 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)F232.CB) [> 3.093 = 5.156 < 6.702] w=0.774 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I317.CB) [> 3.691 = 6.152 < 7.998] w=0.773 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)I129.CB) [> 3.446 = 5.744 < 7.467] w=0.772 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)L349.CB) [> 3.427 = 5.711 < 7.425] w=0.770 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)G273.CA) [> 3.837 = 6.394 < 8.313] w=0.770 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)S321.CB) [> 3.415 = 5.692 < 7.399] w=0.770 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)N404.CB) [> 3.818 = 6.363 < 8.272] w=0.770 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)E320.CB) [> 3.871 = 6.452 < 8.387] w=0.770 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)E320.CB) [> 3.015 = 5.024 < 6.532] w=0.770 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)E320.CB) [> 2.811 = 4.685 < 6.091] w=0.770 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)I319.CB) [> 4.295 = 7.158 < 9.305] w=0.770 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)G272.CA) [> 3.247 = 5.412 < 7.035] w=0.770 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)I350.CB) [> 4.125 = 6.875 < 8.938] w=0.770 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)G181.CA) [> 4.152 = 6.920 < 8.996] w=0.761 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)H231.CB) [> 3.420 = 5.700 < 7.409] w=0.761 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)A110.CB) [> 3.440 = 5.733 < 7.453] w=0.760 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)E109.CB) [> 3.939 = 6.564 < 8.534] w=0.760 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)L108.CB) [> 3.334 = 5.557 < 7.224] w=0.760 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)V94.CB) [> 3.654 = 6.090 < 7.917] w=0.760 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)I129.CB) [> 4.101 = 6.835 < 8.886] w=0.760 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)D316.CB) [> 4.094 = 6.823 < 8.870] w=0.760 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)G111.CA) [> 3.481 = 5.801 < 7.541] w=0.758 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)G107.CA) [> 4.186 = 6.976 < 9.069] w=0.758 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)H233.CB) [> 4.448 = 7.413 < 9.637] w=0.758 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)F93.CB) [> 4.267 = 7.112 < 9.245] w=0.757 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)I319.CB) [> 3.656 = 6.094 < 7.922] w=0.757 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I254.CB) [> 3.797 = 6.328 < 8.227] w=0.748 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A268.CB) [> 4.383 = 7.306 < 9.497] w=0.748 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)A214.CB) [> 4.268 = 7.114 < 9.248] w=0.748 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)Q226.CB) [> 3.364 = 5.607 < 7.290] w=0.746 to align_bonus # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)M149.CB) [> 3.633 = 6.055 < 7.872] w=0.745 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)V131.CB) [> 3.743 = 6.238 < 8.109] w=0.745 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L351.CB) [> 3.810 = 6.351 < 8.256] w=0.744 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)P178.CB) [> 3.790 = 6.316 < 8.211] w=0.744 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)V325.CB) [> 4.160 = 6.933 < 9.013] w=0.744 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L271.CB) [> 3.976 = 6.627 < 8.615] w=0.734 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)H233.CB) [> 4.363 = 7.272 < 9.453] w=0.732 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)K352.CB) [> 3.126 = 5.210 < 6.773] w=0.730 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)A334.CB) [> 3.783 = 6.304 < 8.196] w=0.730 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)L351.CB) [> 2.831 = 4.718 < 6.133] w=0.730 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)S321.CB) [> 3.875 = 6.459 < 8.396] w=0.730 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)L224.CB) [> 3.504 = 5.840 < 7.592] w=0.721 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)I180.CB) [> 3.947 = 6.579 < 8.553] w=0.721 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)I180.CB) [> 4.382 = 7.304 < 9.495] w=0.721 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)N270.CB) [> 4.439 = 7.399 < 9.619] w=0.721 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L211.CB) [> 3.905 = 6.509 < 8.461] w=0.721 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)F79.CB) [> 2.693 = 4.488 < 5.835] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)E115.CB) [> 3.978 = 6.630 < 8.619] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)A81.CB) [> 3.509 = 5.848 < 7.602] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)D316.CB) [> 3.062 = 5.103 < 6.633] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)T130.CB) [> 3.631 = 6.051 < 7.866] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)N132.CB) [> 4.323 = 7.205 < 9.366] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)A119.CB) [> 4.187 = 6.979 < 9.073] w=0.718 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)E115.CB) [> 3.556 = 5.927 < 7.705] w=0.718 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)K352.CB) [> 3.093 = 5.155 < 6.701] w=0.717 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)G78.CA) [> 3.902 = 6.503 < 8.454] w=0.717 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I180.CB) [> 3.326 = 5.543 < 7.206] w=0.717 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)N179.CB) [> 4.257 = 7.095 < 9.224] w=0.717 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)F318.CB) [> 4.300 = 7.167 < 9.317] w=0.717 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)E320.CB) [> 2.900 = 4.833 < 6.283] w=0.717 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L332.CB) [> 4.008 = 6.679 < 8.683] w=0.717 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)A251.CB) [> 3.398 = 5.663 < 7.362] w=0.708 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)L155.CB) [> 4.179 = 6.965 < 9.055] w=0.708 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)I254.CB) [> 3.589 = 5.982 < 7.776] w=0.708 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)L258.CB) [> 3.656 = 6.093 < 7.921] w=0.708 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A251.CB) [> 3.529 = 5.881 < 7.645] w=0.708 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)T228.CB) [> 3.046 = 5.077 < 6.601] w=0.707 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)H410.CB) [> 4.228 = 7.047 < 9.161] w=0.704 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)G322.CA) [> 4.303 = 7.172 < 9.324] w=0.704 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)A326.CB) [> 4.182 = 6.971 < 9.062] w=0.704 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)L224.CB) [> 3.896 = 6.493 < 8.441] w=0.695 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)T228.CB) [> 3.964 = 6.607 < 8.589] w=0.693 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)G205.CA) [> 4.033 = 6.721 < 8.737] w=0.691 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)F324.CB) [> 3.935 = 6.558 < 8.525] w=0.691 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)R323.CB) [> 3.919 = 6.532 < 8.492] w=0.691 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)I319.CB) [> 3.919 = 6.532 < 8.491] w=0.691 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)G322.CA) [> 4.060 = 6.766 < 8.796] w=0.691 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)G273.CA) [> 4.341 = 7.235 < 9.405] w=0.691 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)G181.CA) [> 3.891 = 6.485 < 8.431] w=0.681 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)T154.CB) [> 3.585 = 5.974 < 7.767] w=0.681 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)A247.CB) [> 3.100 = 5.167 < 6.718] w=0.681 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)I254.CB) [> 3.454 = 5.756 < 7.483] w=0.681 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)N132.CB) [> 3.444 = 5.740 < 7.462] w=0.680 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)L351.CB) [> 3.894 = 6.491 < 8.438] w=0.677 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)F324.CB) [> 3.621 = 6.034 < 7.845] w=0.677 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)H410.CB) [> 4.098 = 6.829 < 8.878] w=0.677 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)L408.CB) [> 4.085 = 6.809 < 8.852] w=0.677 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)A81.CB) [> 3.994 = 6.657 < 8.654] w=0.667 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)I317.CB) [> 3.919 = 6.532 < 8.492] w=0.667 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)D316.CB) [> 3.706 = 6.177 < 8.031] w=0.667 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)A326.CB) [> 2.937 = 4.895 < 6.363] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)I412.CB) [> 3.555 = 5.924 < 7.702] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)F318.CB) [> 3.714 = 6.191 < 8.048] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)E250.CB) [> 2.620 = 4.366 < 5.676] w=0.655 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)N179.CB) [> 3.119 = 5.198 < 6.757] w=0.655 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)L266.CB) [> 3.506 = 5.843 < 7.595] w=0.655 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)E158.CB) [> 2.993 = 4.989 < 6.485] w=0.655 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)F318.CB) [> 4.199 = 6.999 < 9.099] w=0.653 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)V325.CB) [> 4.251 = 7.085 < 9.211] w=0.651 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)E158.CB) [> 3.564 = 5.940 < 7.722] w=0.651 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)N404.CB) [> 3.957 = 6.595 < 8.574] w=0.651 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)T409.CB) [> 4.206 = 7.010 < 9.113] w=0.651 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)G77.CA) [> 3.271 = 5.452 < 7.088] w=0.641 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)V215.CB) [> 3.987 = 6.644 < 8.638] w=0.641 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)F204.CB) [> 3.587 = 5.978 < 7.771] w=0.641 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)I269.CB) [> 3.735 = 6.225 < 8.092] w=0.641 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)Y83.CB) [> 4.194 = 6.990 < 9.088] w=0.640 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)M229.CB) [> 2.647 = 4.411 < 5.735] w=0.640 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)P315.CB) [> 3.271 = 5.452 < 7.087] w=0.639 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)V331.CB) [> 4.548 = 7.580 < 9.854] w=0.637 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)T409.CB) [> 3.314 = 5.523 < 7.179] w=0.637 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)I407.CB) [> 3.996 = 6.660 < 8.659] w=0.637 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)N221.CB) [> 2.794 = 4.657 < 6.055] w=0.628 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)F318.CB) [> 3.994 = 6.656 < 8.653] w=0.627 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)L351.CB) [> 3.825 = 6.375 < 8.287] w=0.624 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)I407.CB) [> 4.362 = 7.269 < 9.450] w=0.624 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)I407.CB) [> 3.487 = 5.812 < 7.556] w=0.624 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)R402.CB) [> 3.579 = 5.965 < 7.754] w=0.624 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)H410.CB) [> 3.634 = 6.057 < 7.874] w=0.624 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)E320.CB) [> 4.606 = 7.677 < 9.980] w=0.624 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L224.CB) [> 3.545 = 5.909 < 7.681] w=0.615 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)I180.CB) [> 3.993 = 6.655 < 8.652] w=0.615 to align_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)I269.CB) [> 3.736 = 6.226 < 8.094] w=0.614 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)Q226.CB) [> 4.128 = 6.880 < 8.944] w=0.614 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)A326.CB) [> 4.382 = 7.303 < 9.493] w=0.611 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)T413.CB) [> 3.818 = 6.363 < 8.272] w=0.611 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)E250.CB) [> 4.016 = 6.693 < 8.701] w=0.602 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)A268.CB) [> 4.424 = 7.373 < 9.585] w=0.602 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)I317.CB) [> 3.212 = 5.353 < 6.959] w=0.600 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)E109.CB) [> 4.435 = 7.391 < 9.608] w=0.600 to align_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)N270.CB) [> 3.683 = 6.139 < 7.981] w=0.600 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)G107.CA) [> 4.319 = 7.198 < 9.358] w=0.599 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)A263.CB) [> 3.884 = 6.474 < 8.416] w=0.599 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)I333.CB) [> 3.895 = 6.492 < 8.440] w=0.598 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)A405.CB) [> 3.950 = 6.584 < 8.559] w=0.598 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)R402.CB) [> 3.886 = 6.477 < 8.421] w=0.598 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)I350.CB) [> 4.426 = 7.376 < 9.589] w=0.598 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)E115.CB) [> 3.879 = 6.466 < 8.405] w=0.598 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)I412.CB) [> 3.440 = 5.733 < 7.453] w=0.598 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)G272.CA) [> 3.932 = 6.554 < 8.520] w=0.598 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)A330.CB) [> 4.299 = 7.164 < 9.314] w=0.598 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L271.CB) [> 4.147 = 6.911 < 8.985] w=0.588 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)E225.CB) [> 3.650 = 6.084 < 7.909] w=0.587 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)M229.CB) [> 4.402 = 7.336 < 9.537] w=0.587 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)F227.CB) [> 3.075 = 5.125 < 6.663] w=0.587 to align_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)A268.CB) [> 2.339 = 3.899 < 5.068] w=0.587 to align_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L266.CB) [> 3.368 = 5.614 < 7.298] w=0.587 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)K352.CB) [> 3.595 = 5.992 < 7.790] w=0.584 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)K353.CB) [> 2.823 = 4.705 < 6.116] w=0.584 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)F204.CB) [> 4.352 = 7.254 < 9.430] w=0.584 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)L408.CB) [> 3.636 = 6.061 < 7.879] w=0.584 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)G273.CA) [> 4.162 = 6.937 < 9.019] w=0.584 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)N221.CB) [> 3.994 = 6.656 < 8.653] w=0.575 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)N270.CB) [> 4.487 = 7.478 < 9.721] w=0.574 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)M149.CB) [> 3.954 = 6.589 < 8.566] w=0.574 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)I317.CB) [> 3.963 = 6.604 < 8.586] w=0.574 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)F318.CB) [> 4.117 = 6.861 < 8.920] w=0.574 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)K353.CB) [> 2.667 = 4.445 < 5.779] w=0.571 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)K352.CB) [> 3.020 = 5.033 < 6.543] w=0.571 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)I319.CB) [> 3.595 = 5.992 < 7.789] w=0.571 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)E162.CB) [> 4.074 = 6.790 < 8.827] w=0.571 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)A416.CB) [> 3.582 = 5.970 < 7.761] w=0.571 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)I319.CB) [> 3.424 = 5.707 < 7.419] w=0.571 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)E320.CB) [> 4.174 = 6.957 < 9.044] w=0.571 to align_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)K267.CB) [> 3.913 = 6.522 < 8.478] w=0.560 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)L118.CB) [> 3.556 = 5.927 < 7.705] w=0.558 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)T413.CB) [> 4.153 = 6.922 < 8.998] w=0.558 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)N123.CB) [> 3.757 = 6.262 < 8.141] w=0.558 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)L224.CB) [> 3.499 = 5.832 < 7.581] w=0.548 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)L155.CB) [> 3.161 = 5.269 < 6.850] w=0.548 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I153.CB) [> 3.162 = 5.271 < 6.852] w=0.548 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)S208.CB) [> 3.516 = 5.860 < 7.618] w=0.548 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)L139.CB) [> 3.333 = 5.555 < 7.221] w=0.546 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)K352.CB) [> 3.490 = 5.816 < 7.561] w=0.545 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)P315.CB) [> 3.812 = 6.353 < 8.259] w=0.545 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)G274.CA) [> 3.183 = 5.304 < 6.896] w=0.545 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)I129.CB) [> 4.260 = 7.099 < 9.229] w=0.544 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)G274.CA) [> 4.200 = 7.000 < 9.100] w=0.544 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)L271.CB) [> 4.350 = 7.251 < 9.426] w=0.544 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)E257.CB) [> 3.821 = 6.368 < 8.278] w=0.544 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L258.CB) [> 4.245 = 7.075 < 9.197] w=0.535 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L218.CB) [> 4.443 = 7.404 < 9.626] w=0.535 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)H151.CB) [> 3.793 = 6.321 < 8.218] w=0.535 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)P128.CB) [> 4.351 = 7.251 < 9.427] w=0.534 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)F227.CB) [> 3.518 = 5.863 < 7.621] w=0.533 to align_bonus # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I129.CB) [> 4.493 = 7.489 < 9.735] w=0.533 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)T413.CB) [> 3.436 = 5.726 < 7.444] w=0.531 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)V299.CB) [> 3.777 = 6.296 < 8.184] w=0.531 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)K415.CB) [> 2.592 = 4.319 < 5.615] w=0.531 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)K415.CB) [> 2.727 = 4.545 < 5.908] w=0.531 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)L419.CB) [> 3.569 = 5.949 < 7.734] w=0.531 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)A296.CB) [> 2.620 = 4.367 < 5.678] w=0.531 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)I230.CB) [> 4.622 = 7.704 < 10.015] w=0.522 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)I269.CB) [> 4.217 = 7.028 < 9.137] w=0.522 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)G143.CA) [> 4.175 = 6.958 < 9.046] w=0.521 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N141.CB, (T0547)I169.CB) [> 3.458 = 5.763 < 7.493] w=0.521 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)I382.CB) [> 3.694 = 6.156 < 8.003] w=0.518 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)M261.CB) [> 4.229 = 7.048 < 9.163] w=0.518 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G150.CA, (T0547)N179.CB) [> 4.020 = 6.700 < 8.711] w=0.518 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)K357.CB) [> 3.618 = 6.030 < 7.839] w=0.518 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)F324.CB) [> 2.612 = 4.353 < 5.659] w=0.518 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)F93.CB) [> 4.465 = 7.441 < 9.673] w=0.518 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)G92.CA) [> 4.261 = 7.101 < 9.232] w=0.518 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)K414.CB) [> 2.212 = 3.687 < 4.793] w=0.518 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)G274.CA) [> 4.429 = 7.381 < 9.595] w=0.518 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)L118.CB) [> 3.761 = 6.269 < 8.149] w=0.518 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)K415.CB) [> 3.578 = 5.964 < 7.753] w=0.518 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)N179.CB) [> 3.177 = 5.295 < 6.884] w=0.509 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)H151.CB) [> 3.024 = 5.040 < 6.552] w=0.509 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)Q226.CB) [> 3.159 = 5.265 < 6.845] w=0.507 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)G133.CA) [> 4.317 = 7.194 < 9.353] w=0.507 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I169.CB) [> 3.277 = 5.462 < 7.101] w=0.506 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)G273.CA) [> 4.354 = 7.256 < 9.433] w=0.505 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)S208.CB) [> 4.205 = 7.009 < 9.112] w=0.505 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)T409.CB) [> 4.049 = 6.748 < 8.773] w=0.505 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)L408.CB) [> 4.530 = 7.549 < 9.814] w=0.505 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)N328.CB) [> 3.496 = 5.827 < 7.575] w=0.505 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)A327.CB) [> 2.731 = 4.552 < 5.917] w=0.505 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)R323.CB) [> 4.309 = 7.182 < 9.337] w=0.505 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)S321.CB) [> 3.357 = 5.596 < 7.275] w=0.505 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)K414.CB) [> 3.471 = 5.785 < 7.520] w=0.505 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)G272.CA) [> 3.937 = 6.561 < 8.530] w=0.505 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)L271.CB) [> 3.888 = 6.480 < 8.424] w=0.495 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)T130.CB) [> 4.526 = 7.543 < 9.806] w=0.494 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)L223.CB) [> 3.679 = 6.132 < 7.971] w=0.494 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)A263.CB) [> 3.954 = 6.590 < 8.567] w=0.493 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)P315.CB) [> 3.536 = 5.893 < 7.661] w=0.491 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)G273.CA) [> 4.433 = 7.388 < 9.604] w=0.491 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)I319.CB) [> 4.188 = 6.981 < 9.075] w=0.491 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L351.CB) [> 4.107 = 6.845 < 8.899] w=0.491 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)G101.CA) [> 3.989 = 6.649 < 8.644] w=0.482 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)G252.CA) [> 4.450 = 7.416 < 9.641] w=0.482 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)S202.CB) [> 3.851 = 6.418 < 8.344] w=0.482 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)Y106.CB) [> 3.742 = 6.237 < 8.108] w=0.479 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)Y106.CB) [> 3.029 = 5.049 < 6.563] w=0.479 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)G101.CA) [> 4.128 = 6.880 < 8.944] w=0.478 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)Y106.CB) [> 3.032 = 5.053 < 6.569] w=0.478 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)G274.CA) [> 3.128 = 5.213 < 6.777] w=0.478 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L418.CB) [> 3.819 = 6.366 < 8.275] w=0.478 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)G274.CA) [> 4.072 = 6.787 < 8.823] w=0.478 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)T228.CB) [> 3.690 = 6.149 < 7.994] w=0.478 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)Y295.CB) [> 3.385 = 5.641 < 7.334] w=0.478 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)D298.CB) [> 3.042 = 5.071 < 6.592] w=0.478 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)V299.CB) [> 3.980 = 6.634 < 8.624] w=0.478 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)R323.CB) [> 4.392 = 7.319 < 9.515] w=0.478 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)F324.CB) [> 4.337 = 7.228 < 9.397] w=0.478 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I153.CB) [> 4.168 = 6.947 < 9.031] w=0.469 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)T154.CB) [> 3.750 = 6.249 < 8.124] w=0.469 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)H151.CB) [> 3.406 = 5.676 < 7.379] w=0.469 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)T207.CB) [> 4.559 = 7.598 < 9.877] w=0.469 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)E162.CB) [> 3.852 = 6.420 < 8.346] w=0.469 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)V131.CB) [> 4.141 = 6.902 < 8.973] w=0.467 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)E250.CB) [> 4.010 = 6.684 < 8.689] w=0.467 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)D298.CB) [> 3.222 = 5.371 < 6.982] w=0.467 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)T154.CB) [> 3.486 = 5.810 < 7.553] w=0.465 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)H410.CB) [> 3.544 = 5.907 < 7.679] w=0.465 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)I417.CB) [> 4.029 = 6.714 < 8.729] w=0.465 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)L418.CB) [> 4.064 = 6.774 < 8.806] w=0.465 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)R323.CB) [> 3.291 = 5.485 < 7.131] w=0.465 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)E162.CB) [> 3.750 = 6.250 < 8.125] w=0.465 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)I388.CB) [> 3.606 = 6.011 < 7.814] w=0.465 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)R183.CB) [> 4.301 = 7.168 < 9.318] w=0.465 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)E210.CB) [> 4.299 = 7.166 < 9.315] w=0.465 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I153.CB) [> 3.911 = 6.518 < 8.473] w=0.456 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)A296.CB) [> 3.155 = 5.259 < 6.837] w=0.454 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)G143.CA) [> 4.107 = 6.844 < 8.898] w=0.453 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)G274.CA) [> 3.239 = 5.399 < 7.018] w=0.452 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D383.CB, (T0547)V397.CB) [> 3.693 = 6.156 < 8.002] w=0.452 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)I388.CB) [> 3.386 = 5.643 < 7.336] w=0.452 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)F144.CB) [> 3.974 = 6.624 < 8.611] w=0.452 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)L419.CB) [> 3.776 = 6.294 < 8.182] w=0.452 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)A416.CB) [> 4.212 = 7.020 < 9.126] w=0.452 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)F324.CB) [> 4.595 = 7.658 < 9.955] w=0.452 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)L182.CB) [> 4.323 = 7.205 < 9.366] w=0.442 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)A110.CB) [> 4.581 = 7.635 < 9.925] w=0.440 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G322.CA) [> 2.480 = 4.133 < 5.373] w=0.438 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)R323.CB) [> 3.387 = 5.645 < 7.339] w=0.438 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)A121.CB) [> 3.674 = 6.124 < 7.961] w=0.438 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)R323.CB) [> 4.004 = 6.673 < 8.675] w=0.438 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A334.CB) [> 4.353 = 7.255 < 9.432] w=0.438 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)L271.CB) [> 4.451 = 7.419 < 9.644] w=0.438 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)A276.CB) [> 2.835 = 4.725 < 6.143] w=0.438 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L411.CB) [> 2.895 = 4.826 < 6.273] w=0.438 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)I140.CB) [> 3.531 = 5.886 < 7.651] w=0.438 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G205.CA) [> 4.201 = 7.001 < 9.102] w=0.438 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)Y295.CB) [> 3.943 = 6.571 < 8.543] w=0.438 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)G322.CA) [> 4.618 = 7.697 < 10.007] w=0.438 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L418.CB) [> 4.403 = 7.339 < 9.540] w=0.438 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)G322.CA) [> 4.697 = 7.828 < 10.177] w=0.438 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)I302.CB) [> 2.813 = 4.689 < 6.096] w=0.438 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)T156.CB) [> 3.874 = 6.456 < 8.393] w=0.429 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)N270.CB) [> 4.447 = 7.412 < 9.636] w=0.429 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)E294.CB) [> 3.481 = 5.802 < 7.543] w=0.428 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)L118.CB) [> 3.955 = 6.592 < 8.569] w=0.426 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)L234.CB) [> 4.157 = 6.929 < 9.008] w=0.426 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)L275.CB) [> 3.835 = 6.392 < 8.310] w=0.425 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)L385.CB) [> 3.913 = 6.521 < 8.477] w=0.425 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)G322.CA) [> 4.526 = 7.543 < 9.805] w=0.425 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)I412.CB) [> 4.316 = 7.193 < 9.351] w=0.425 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)K414.CB) [> 3.997 = 6.661 < 8.660] w=0.425 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)A165.CB) [> 3.959 = 6.599 < 8.579] w=0.425 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)Q424.CB) [> 3.453 = 5.754 < 7.481] w=0.425 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)F318.CB) [> 4.234 = 7.057 < 9.173] w=0.425 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)N270.CB) [> 4.221 = 7.036 < 9.146] w=0.425 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)V325.CB) [> 4.511 = 7.519 < 9.774] w=0.425 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)K415.CB) [> 2.809 = 4.682 < 6.086] w=0.425 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)I317.CB) [> 3.454 = 5.757 < 7.484] w=0.425 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)V299.CB) [> 3.502 = 5.837 < 7.588] w=0.425 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)A127.CB) [> 2.966 = 4.943 < 6.425] w=0.416 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)N179.CB) [> 3.628 = 6.047 < 7.861] w=0.416 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)P178.CB) [> 3.697 = 6.161 < 8.009] w=0.414 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)L292.CB) [> 3.061 = 5.102 < 6.632] w=0.414 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)I317.CB) [> 3.761 = 6.269 < 8.149] w=0.412 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)K353.CB) [> 3.919 = 6.532 < 8.491] w=0.412 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)D393.CB) [> 2.989 = 4.982 < 6.477] w=0.412 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)I382.CB) [> 3.858 = 6.429 < 8.358] w=0.412 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)P356.CB) [> 3.656 = 6.093 < 7.920] w=0.412 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)A416.CB) [> 3.246 = 5.410 < 7.034] w=0.412 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E164.CB, (T0547)L217.CB) [> 4.202 = 7.003 < 9.103] w=0.412 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K171.CB, (T0547)L223.CB) [> 3.389 = 5.648 < 7.342] w=0.412 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)T390.CB) [> 4.110 = 6.850 < 8.905] w=0.412 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)S387.CB) [> 3.683 = 6.138 < 7.979] w=0.412 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)L292.CB) [> 3.362 = 5.604 < 7.285] w=0.412 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)F324.CB) [> 3.816 = 6.360 < 8.267] w=0.412 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)A127.CB) [> 3.934 = 6.557 < 8.524] w=0.402 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L218.CB) [> 4.480 = 7.466 < 9.706] w=0.402 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)D316.CB) [> 3.765 = 6.275 < 8.157] w=0.401 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)A119.CB) [> 3.976 = 6.627 < 8.616] w=0.401 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)Y295.CB) [> 3.885 = 6.474 < 8.417] w=0.401 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L271.CB) [> 4.158 = 6.929 < 9.008] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)S321.CB) [> 4.398 = 7.331 < 9.530] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)Y295.CB) [> 4.129 = 6.882 < 8.947] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)G111.CA) [> 4.393 = 7.321 < 9.518] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)A326.CB) [> 3.149 = 5.248 < 6.822] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)R323.CB) [> 4.072 = 6.787 < 8.823] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)F93.CB) [> 4.471 = 7.451 < 9.686] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)E158.CB) [> 4.283 = 7.138 < 9.280] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)A416.CB) [> 3.633 = 6.055 < 7.871] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)L418.CB) [> 3.649 = 6.082 < 7.906] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)D422.CB) [> 3.605 = 6.008 < 7.811] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)G77.CA) [> 3.777 = 6.294 < 8.182] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)R293.CB) [> 3.097 = 5.161 < 6.710] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)N270.CB) [> 4.362 = 7.269 < 9.450] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L271.CB) [> 4.133 = 6.888 < 8.954] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N249.CB, (T0547)I302.CB) [> 3.859 = 6.432 < 8.362] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N216.CB, (T0547)M261.CB) [> 3.924 = 6.541 < 8.503] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)D298.CB) [> 3.853 = 6.422 < 8.348] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L292.CB) [> 4.162 = 6.937 < 9.018] w=0.398 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)L258.CB) [> 4.061 = 6.768 < 8.798] w=0.389 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)L223.CB) [> 2.696 = 4.494 < 5.842] w=0.388 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)K267.CB) [> 3.671 = 6.119 < 7.955] w=0.386 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)A276.CB) [> 2.688 = 4.481 < 5.825] w=0.385 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)T390.CB) [> 3.361 = 5.601 < 7.281] w=0.385 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)D398.CB) [> 4.448 = 7.413 < 9.637] w=0.385 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)I412.CB) [> 3.701 = 6.168 < 8.019] w=0.385 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)G421.CA) [> 3.919 = 6.532 < 8.491] w=0.385 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I417.CB) [> 4.127 = 6.879 < 8.942] w=0.385 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)M261.CB) [> 3.403 = 5.672 < 7.373] w=0.385 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)S321.CB) [> 4.616 = 7.693 < 10.000] w=0.385 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)V299.CB) [> 4.211 = 7.019 < 9.124] w=0.385 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)A127.CB) [> 4.024 = 6.706 < 8.718] w=0.375 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L223.CB) [> 3.196 = 5.326 < 6.924] w=0.375 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L292.CB) [> 3.513 = 5.856 < 7.612] w=0.372 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)P315.CB) [> 3.855 = 6.425 < 8.353] w=0.372 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)L411.CB) [> 3.981 = 6.636 < 8.626] w=0.372 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F340.CB, (T0547)I350.CB) [> 4.276 = 7.127 < 9.266] w=0.372 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)L394.CB) [> 4.139 = 6.898 < 8.967] w=0.372 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)P128.CB) [> 4.014 = 6.691 < 8.698] w=0.372 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)E320.CB) [> 4.577 = 7.629 < 9.918] w=0.372 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)A276.CB) [> 3.295 = 5.491 < 7.138] w=0.372 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)T413.CB) [> 2.654 = 4.423 < 5.749] w=0.372 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E138.CB, (T0547)I169.CB) [> 3.822 = 6.371 < 8.282] w=0.372 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)I306.CB) [> 3.490 = 5.817 < 7.562] w=0.372 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)V300.CB) [> 4.183 = 6.972 < 9.064] w=0.372 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)L97.CB) [> 4.402 = 7.336 < 9.537] w=0.363 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)H231.CB) [> 4.296 = 7.160 < 9.309] w=0.363 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)G181.CA) [> 3.796 = 6.327 < 8.226] w=0.363 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)A110.CB) [> 3.053 = 5.088 < 6.614] w=0.361 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)N132.CB) [> 4.634 = 7.723 < 10.040] w=0.361 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)D316.CB) [> 3.806 = 6.343 < 8.246] w=0.360 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)I269.CB) [> 3.648 = 6.081 < 7.905] w=0.360 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)G205.CA) [> 4.673 = 7.788 < 10.125] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)V325.CB) [> 4.329 = 7.215 < 9.379] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)V277.CB) [> 4.408 = 7.347 < 9.551] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)P315.CB) [> 4.255 = 7.091 < 9.219] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E148.CB, (T0547)P176.CB) [> 4.177 = 6.962 < 9.051] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)H410.CB) [> 4.222 = 7.037 < 9.148] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)L118.CB) [> 3.841 = 6.401 < 8.322] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)K415.CB) [> 2.967 = 4.944 < 6.428] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)K348.CB) [> 4.625 = 7.709 < 10.022] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)T409.CB) [> 3.960 = 6.600 < 8.580] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)D383.CB) [> 3.611 = 6.018 < 7.824] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)H151.CB) [> 3.299 = 5.499 < 7.148] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)F392.CB) [> 3.893 = 6.489 < 8.435] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)D380.CB) [> 3.935 = 6.558 < 8.526] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)P128.CB) [> 4.202 = 7.003 < 9.104] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)E320.CB) [> 4.432 = 7.386 < 9.602] w=0.359 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)S208.CB) [> 3.572 = 5.954 < 7.740] w=0.349 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)L234.CB) [> 3.940 = 6.567 < 8.538] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)K414.CB) [> 4.434 = 7.389 < 9.606] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)K415.CB) [> 3.047 = 5.079 < 6.602] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)K203.CB) [> 3.165 = 5.274 < 6.857] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)L399.CB) [> 3.346 = 5.577 < 7.250] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)T154.CB) [> 3.989 = 6.648 < 8.642] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)L399.CB) [> 3.577 = 5.962 < 7.751] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)L408.CB) [> 3.718 = 6.196 < 8.055] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)K414.CB) [> 3.890 = 6.483 < 8.428] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)K415.CB) [> 3.739 = 6.232 < 8.101] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)K414.CB) [> 2.467 = 4.111 < 5.344] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)I412.CB) [> 3.168 = 5.279 < 6.863] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)S387.CB) [> 4.137 = 6.896 < 8.964] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)D383.CB) [> 4.036 = 6.727 < 8.745] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)D383.CB) [> 3.625 = 6.042 < 7.854] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)E386.CB) [> 3.743 = 6.239 < 8.110] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)N425.CB) [> 3.485 = 5.809 < 7.551] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)G421.CA) [> 3.715 = 6.191 < 8.049] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)K357.CB) [> 3.752 = 6.254 < 8.130] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)I417.CB) [> 4.096 = 6.826 < 8.874] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)E320.CB) [> 4.258 = 7.097 < 9.227] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L303.CB) [> 3.785 = 6.308 < 8.200] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)R183.CB) [> 4.547 = 7.578 < 9.852] w=0.345 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)E115.CB) [> 3.944 = 6.574 < 8.546] w=0.333 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)Y366.CB) [> 3.294 = 5.491 < 7.138] w=0.332 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)S368.CB) [> 4.186 = 6.976 < 9.069] w=0.332 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)L411.CB) [> 3.164 = 5.273 < 6.855] w=0.332 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)I407.CB) [> 4.240 = 7.066 < 9.186] w=0.332 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D383.CB, (T0547)L394.CB) [> 3.707 = 6.178 < 8.031] w=0.332 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)T413.CB) [> 3.390 = 5.650 < 7.345] w=0.332 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)K414.CB) [> 4.115 = 6.859 < 8.916] w=0.332 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G159.CA) [> 4.414 = 7.357 < 9.565] w=0.332 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)N425.CB) [> 3.442 = 5.737 < 7.458] w=0.332 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)I417.CB) [> 3.594 = 5.991 < 7.788] w=0.332 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)N265.CB) [> 4.221 = 7.035 < 9.146] w=0.323 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R137.CB, (T0547)A165.CB) [> 3.233 = 5.388 < 7.004] w=0.323 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)L155.CB) [> 4.049 = 6.749 < 8.774] w=0.323 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)N270.CB) [> 3.722 = 6.203 < 8.065] w=0.320 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)Q226.CB) [> 3.832 = 6.386 < 8.302] w=0.320 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A276.CB) [> 4.096 = 6.827 < 8.876] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)A268.CB) [> 4.526 = 7.544 < 9.807] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)I382.CB) [> 3.512 = 5.853 < 7.609] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)T413.CB) [> 4.099 = 6.832 < 8.881] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)L365.CB) [> 4.156 = 6.926 < 9.004] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)L49.CB) [> 3.787 = 6.312 < 8.205] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L420.CB) [> 3.448 = 5.746 < 7.470] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)A146.CB) [> 3.907 = 6.512 < 8.465] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)H384.CB) [> 3.912 = 6.520 < 8.477] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)G421.CA) [> 3.912 = 6.521 < 8.477] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)E386.CB) [> 4.150 = 6.917 < 8.992] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)K246.CB) [> 4.561 = 7.601 < 9.882] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)V331.CB) [> 4.097 = 6.828 < 8.876] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)E320.CB) [> 4.617 = 7.695 < 10.003] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)E257.CB) [> 3.876 = 6.459 < 8.397] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)V325.CB) [> 4.609 = 7.682 < 9.987] w=0.319 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)A268.CB) [> 4.431 = 7.386 < 9.601] w=0.308 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)I169.CB) [> 3.174 = 5.290 < 6.878] w=0.308 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)E125.CB) [> 4.401 = 7.335 < 9.536] w=0.305 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)A427.CB) [> 3.855 = 6.425 < 8.352] w=0.305 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)H410.CB) [> 4.120 = 6.866 < 8.926] w=0.305 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)N221.CB) [> 4.463 = 7.439 < 9.671] w=0.305 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)N152.CB) [> 3.403 = 5.672 < 7.374] w=0.305 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)L429.CB) [> 4.035 = 6.726 < 8.744] w=0.305 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)L399.CB) [> 3.961 = 6.601 < 8.581] w=0.305 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)I412.CB) [> 3.890 = 6.483 < 8.428] w=0.305 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)L430.CB) [> 3.862 = 6.437 < 8.368] w=0.305 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)L155.CB) [> 4.387 = 7.311 < 9.505] w=0.305 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L411.CB) [> 4.484 = 7.474 < 9.716] w=0.305 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)F232.CB) [> 4.611 = 7.685 < 9.991] w=0.296 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)G235.CA) [> 4.085 = 6.809 < 8.852] w=0.295 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)I166.CB) [> 3.543 = 5.905 < 7.677] w=0.295 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)F79.CB) [> 4.018 = 6.696 < 8.705] w=0.292 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)L385.CB) [> 3.539 = 5.899 < 7.669] w=0.292 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)A431.CB) [> 3.884 = 6.474 < 8.416] w=0.292 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)L303.CB) [> 4.271 = 7.118 < 9.253] w=0.292 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)I317.CB) [> 4.010 = 6.684 < 8.689] w=0.292 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)I417.CB) [> 3.458 = 5.764 < 7.493] w=0.292 to align_bonus # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)A147.CB) [> 3.509 = 5.848 < 7.603] w=0.292 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)P178.CB) [> 3.469 = 5.782 < 7.517] w=0.292 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)L155.CB) [> 3.689 = 6.148 < 7.993] w=0.292 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)F392.CB) [> 3.913 = 6.521 < 8.477] w=0.292 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)H384.CB) [> 4.018 = 6.697 < 8.707] w=0.292 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)A214.CB) [> 4.557 = 7.596 < 9.874] w=0.292 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)I333.CB) [> 4.008 = 6.680 < 8.684] w=0.292 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)K203.CB) [> 4.223 = 7.039 < 9.151] w=0.283 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)P178.CB) [> 4.009 = 6.682 < 8.687] w=0.283 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)A170.CB) [> 3.519 = 5.866 < 7.626] w=0.282 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)N80.CB) [> 3.900 = 6.501 < 8.451] w=0.280 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)S112.CB) [> 4.593 = 7.654 < 9.950] w=0.280 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)A327.CB) [> 4.436 = 7.394 < 9.612] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)I200.CB) [> 3.756 = 6.260 < 8.138] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)F318.CB) [> 4.456 = 7.426 < 9.654] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)I382.CB) [> 3.522 = 5.870 < 7.631] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)D393.CB) [> 3.337 = 5.561 < 7.229] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)A110.CB) [> 4.476 = 7.461 < 9.699] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)L244.CB) [> 4.582 = 7.636 < 9.927] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)L155.CB) [> 3.756 = 6.260 < 8.138] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)G126.CA) [> 4.140 = 6.901 < 8.971] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)M229.CB) [> 4.021 = 6.702 < 8.713] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)K286.CB) [> 3.746 = 6.243 < 8.116] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)L399.CB) [> 3.640 = 6.066 < 7.886] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K286.CB, (T0547)Y295.CB) [> 3.642 = 6.070 < 7.891] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L349.CB) [> 3.650 = 6.084 < 7.909] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)T228.CB) [> 3.713 = 6.189 < 8.045] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)L399.CB) [> 4.319 = 7.198 < 9.358] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)Y90.CB) [> 4.437 = 7.396 < 9.614] w=0.279 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)A146.CB) [> 3.521 = 5.869 < 7.630] w=0.267 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)M229.CB) [> 4.550 = 7.583 < 9.858] w=0.266 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)A431.CB) [> 4.265 = 7.109 < 9.242] w=0.266 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)L419.CB) [> 3.942 = 6.570 < 8.541] w=0.266 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)H384.CB) [> 3.813 = 6.355 < 8.262] w=0.266 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)G181.CA) [> 4.478 = 7.463 < 9.702] w=0.266 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I412.CB) [> 4.276 = 7.127 < 9.265] w=0.266 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)L389.CB) [> 3.818 = 6.364 < 8.273] w=0.266 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)I388.CB) [> 3.380 = 5.633 < 7.323] w=0.266 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L358.CB) [> 3.690 = 6.150 < 7.995] w=0.266 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)M229.CB) [> 4.494 = 7.490 < 9.736] w=0.266 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)I180.CB) [> 3.994 = 6.657 < 8.654] w=0.256 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G199.CA) [> 3.640 = 6.067 < 7.887] w=0.255 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)A165.CB) [> 3.803 = 6.339 < 8.240] w=0.254 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)T228.CB) [> 4.448 = 7.413 < 9.637] w=0.254 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)I317.CB) [> 3.865 = 6.441 < 8.373] w=0.252 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)A247.CB) [> 3.831 = 6.384 < 8.300] w=0.252 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)P356.CB) [> 4.131 = 6.885 < 8.950] w=0.252 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)H379.CB) [> 3.665 = 6.108 < 7.941] w=0.252 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)F392.CB) [> 2.996 = 4.993 < 6.491] w=0.252 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)S321.CB) [> 4.336 = 7.226 < 9.394] w=0.252 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)V325.CB) [> 4.400 = 7.334 < 9.534] w=0.252 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)P243.CB) [> 3.997 = 6.662 < 8.661] w=0.252 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)E314.CB) [> 3.924 = 6.541 < 8.503] w=0.252 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)L408.CB) [> 3.463 = 5.772 < 7.503] w=0.252 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)Q400.CB) [> 3.795 = 6.325 < 8.223] w=0.252 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)K415.CB) [> 4.360 = 7.267 < 9.446] w=0.252 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)V299.CB) [> 4.208 = 7.014 < 9.118] w=0.252 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)N152.CB) [> 3.666 = 6.110 < 7.944] w=0.243 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)F204.CB) [> 4.408 = 7.346 < 9.550] w=0.243 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)L97.CB) [> 4.285 = 7.142 < 9.285] w=0.242 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)F318.CB) [> 3.820 = 6.366 < 8.276] w=0.242 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)G126.CA) [> 3.422 = 5.703 < 7.413] w=0.240 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)G199.CA) [> 3.532 = 5.886 < 7.652] w=0.240 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)Q433.CB) [> 4.066 = 6.777 < 8.811] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)Q433.CB) [> 3.480 = 5.800 < 7.540] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I432.CB) [> 3.258 = 5.430 < 7.060] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)Q433.CB) [> 3.906 = 6.511 < 8.464] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I432.CB) [> 3.760 = 6.267 < 8.148] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)L49.CB) [> 3.926 = 6.543 < 8.506] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)K415.CB) [> 4.502 = 7.503 < 9.754] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D434.CB, (T0547)F444.CB) [> 3.328 = 5.547 < 7.212] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)F444.CB) [> 3.697 = 6.162 < 8.011] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)I200.CB) [> 3.501 = 5.835 < 7.585] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)Y122.CB) [> 4.675 = 7.791 < 10.128] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)Y122.CB) [> 4.541 = 7.568 < 9.839] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)V325.CB) [> 4.714 = 7.856 < 10.213] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)R183.CB) [> 4.645 = 7.741 < 10.064] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)F204.CB) [> 4.194 = 6.990 < 9.087] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)V131.CB) [> 4.055 = 6.758 < 8.786] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)Q89.CB) [> 4.067 = 6.778 < 8.812] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)F392.CB) [> 4.157 = 6.928 < 9.007] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)L391.CB) [> 3.236 = 5.393 < 7.011] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)L391.CB) [> 4.132 = 6.886 < 8.952] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L155.CB) [> 4.308 = 7.181 < 9.335] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)E162.CB) [> 4.140 = 6.900 < 8.970] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)M229.CB) [> 4.625 = 7.708 < 10.020] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)G421.CA) [> 3.479 = 5.798 < 7.538] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)H233.CB) [> 4.487 = 7.478 < 9.722] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)I269.CB) [> 4.388 = 7.314 < 9.508] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)I302.CB) [> 4.111 = 6.852 < 8.907] w=0.239 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)I153.CB) [> 3.933 = 6.555 < 8.522] w=0.230 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)I317.CB) [> 3.467 = 5.778 < 7.511] w=0.228 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)I317.CB) [> 4.339 = 7.232 < 9.401] w=0.228 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)G143.CA) [> 4.101 = 6.835 < 8.886] w=0.228 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)Y366.CB) [> 3.420 = 5.699 < 7.409] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)K246.CB) [> 3.510 = 5.850 < 7.605] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)S445.CB) [> 3.596 = 5.994 < 7.792] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)E435.CB) [> 3.625 = 6.042 < 7.854] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)D434.CB) [> 3.546 = 5.910 < 7.683] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)R137.CB) [> 4.268 = 7.113 < 9.246] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)F444.CB) [> 4.196 = 6.993 < 9.090] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)Q448.CB) [> 2.549 = 4.249 < 5.523] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)N443.CB) [> 3.949 = 6.581 < 8.555] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)A326.CB) [> 4.520 = 7.533 < 9.793] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)A263.CB) [> 3.802 = 6.336 < 8.237] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)L248.CB) [> 4.490 = 7.483 < 9.727] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)P128.CB) [> 3.955 = 6.591 < 8.568] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)P128.CB) [> 4.429 = 7.382 < 9.596] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)L266.CB) [> 4.509 = 7.515 < 9.770] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)G395.CA) [> 3.955 = 6.592 < 8.570] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)D422.CB) [> 4.200 = 7.000 < 9.099] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)L420.CB) [> 3.718 = 6.197 < 8.056] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F340.CB, (T0547)L349.CB) [> 4.417 = 7.361 < 9.570] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)D393.CB) [> 3.746 = 6.244 < 8.117] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)N132.CB) [> 3.815 = 6.358 < 8.265] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)A146.CB) [> 3.895 = 6.492 < 8.439] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)G322.CA) [> 4.575 = 7.625 < 9.912] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I319.CB) [> 4.571 = 7.619 < 9.905] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)R185.CB) [> 4.512 = 7.519 < 9.775] w=0.216 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)D316.CB) [> 4.063 = 6.772 < 8.804] w=0.215 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)D312.CB) [> 3.710 = 6.183 < 8.037] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)N443.CB) [> 4.242 = 7.071 < 9.192] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)F447.CB) [> 3.971 = 6.619 < 8.605] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)E435.CB) [> 3.560 = 5.934 < 7.714] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)E278.CB) [> 4.530 = 7.550 < 9.816] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)H233.CB) [> 4.406 = 7.343 < 9.546] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)G322.CA) [> 4.582 = 7.637 < 9.928] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)T130.CB) [> 3.424 = 5.707 < 7.419] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)T156.CB) [> 4.150 = 6.916 < 8.991] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L155.CB) [> 4.508 = 7.513 < 9.767] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)Q433.CB) [> 3.574 = 5.957 < 7.744] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)F392.CB) [> 4.130 = 6.883 < 8.948] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)V547.CB) [> 3.769 = 6.281 < 8.166] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)F392.CB) [> 3.907 = 6.512 < 8.465] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)L420.CB) [> 3.660 = 6.099 < 7.929] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)K415.CB) [> 3.789 = 6.315 < 8.209] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)A416.CB) [> 3.131 = 5.219 < 6.785] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)A416.CB) [> 4.092 = 6.820 < 8.866] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)I157.CB) [> 4.037 = 6.728 < 8.746] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)L418.CB) [> 4.187 = 6.978 < 9.071] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)H151.CB) [> 4.594 = 7.657 < 9.953] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)E320.CB) [> 4.594 = 7.656 < 9.953] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)F51.CB) [> 2.889 = 4.814 < 6.259] w=0.212 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)N152.CB) [> 3.238 = 5.397 < 7.017] w=0.203 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L155.CB) [> 4.464 = 7.441 < 9.673] w=0.203 to align_bonus # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)H151.CB) [> 3.991 = 6.651 < 8.646] w=0.201 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)F447.CB) [> 3.910 = 6.517 < 8.472] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)F447.CB) [> 3.039 = 5.066 < 6.585] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)S445.CB) [> 2.871 = 4.784 < 6.219] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)K76.CB) [> 3.659 = 6.098 < 7.928] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)D136.CB) [> 4.466 = 7.444 < 9.677] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)F174.CB) [> 4.246 = 7.077 < 9.200] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)G181.CA) [> 4.461 = 7.435 < 9.665] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)N284.CB) [> 3.841 = 6.402 < 8.323] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)F444.CB) [> 3.562 = 5.936 < 7.717] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)V436.CB) [> 3.171 = 5.284 < 6.870] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)H151.CB) [> 4.384 = 7.307 < 9.499] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)L420.CB) [> 4.387 = 7.312 < 9.505] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)R402.CB) [> 3.470 = 5.784 < 7.519] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)L211.CB) [> 4.640 = 7.733 < 10.053] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)G272.CA) [> 4.580 = 7.634 < 9.924] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)P128.CB) [> 3.872 = 6.453 < 8.389] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L206.CB) [> 4.474 = 7.457 < 9.694] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)K246.CB) [> 3.870 = 6.449 < 8.384] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N141.CB, (T0547)F174.CB) [> 4.109 = 6.848 < 8.903] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L411.CB) [> 4.327 = 7.212 < 9.375] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)G235.CA) [> 3.329 = 5.548 < 7.212] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)L394.CB) [> 3.491 = 5.818 < 7.563] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)A170.CB) [> 3.280 = 5.467 < 7.107] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)K414.CB) [> 2.866 = 4.777 < 6.210] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)L411.CB) [> 4.229 = 7.049 < 9.163] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L430.CB) [> 3.386 = 5.644 < 7.337] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)L139.CB) [> 4.079 = 6.798 < 8.838] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)I306.CB) [> 3.141 = 5.235 < 6.805] w=0.199 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G111.CA) [> 4.481 = 7.468 < 9.708] w=0.187 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)G235.CA) [> 3.121 = 5.201 < 6.761] w=0.187 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)Y396.CB) [> 4.262 = 7.104 < 9.235] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)K353.CB) [> 4.357 = 7.262 < 9.441] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)Y396.CB) [> 4.483 = 7.472 < 9.714] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)A416.CB) [> 4.645 = 7.742 < 10.065] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)F447.CB) [> 3.826 = 6.377 < 8.290] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)L441.CB) [> 3.781 = 6.302 < 8.193] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)T409.CB) [> 4.516 = 7.527 < 9.786] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T256.CB, (T0547)D312.CB) [> 3.817 = 6.361 < 8.269] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)P243.CB) [> 3.536 = 5.894 < 7.662] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)I306.CB) [> 3.887 = 6.479 < 8.422] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)E115.CB) [> 4.688 = 7.813 < 10.156] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)F318.CB) [> 4.577 = 7.629 < 9.918] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)A276.CB) [> 3.326 = 5.544 < 7.207] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)Q437.CB) [> 2.987 = 4.979 < 6.473] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L430.CB) [> 3.379 = 5.631 < 7.321] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)A431.CB) [> 3.377 = 5.628 < 7.316] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)L430.CB) [> 4.202 = 7.004 < 9.105] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)T409.CB) [> 4.001 = 6.669 < 8.669] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L430.CB) [> 2.861 = 4.768 < 6.199] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)A405.CB) [> 3.782 = 6.304 < 8.195] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)G421.CA) [> 3.868 = 6.446 < 8.380] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)T409.CB) [> 3.865 = 6.441 < 8.374] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)A268.CB) [> 4.234 = 7.056 < 9.173] w=0.186 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)G126.CA) [> 4.372 = 7.287 < 9.474] w=0.175 to align_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)D316.CB) [> 4.630 = 7.716 < 10.031] w=0.174 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)P315.CB) [> 3.523 = 5.871 < 7.632] w=0.174 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)P315.CB) [> 3.687 = 6.145 < 7.988] w=0.174 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)D316.CB) [> 4.544 = 7.573 < 9.844] w=0.174 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)Y396.CB) [> 4.169 = 6.948 < 9.033] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)A427.CB) [> 3.274 = 5.456 < 7.093] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)L391.CB) [> 3.828 = 6.379 < 8.293] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)I540.CB) [> 3.444 = 5.740 < 7.462] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)S539.CB) [> 3.360 = 5.600 < 7.280] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)I538.CB) [> 3.745 = 6.241 < 8.114] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I538.CB) [> 3.692 = 6.153 < 7.999] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)I432.CB) [> 3.718 = 6.197 < 8.056] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)N443.CB) [> 4.073 = 6.789 < 8.826] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)I319.CB) [> 4.512 = 7.521 < 9.777] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)S197.CB) [> 3.752 = 6.254 < 8.130] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)G198.CA) [> 3.306 = 5.510 < 7.163] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)L234.CB) [> 3.640 = 6.066 < 7.886] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L248.CB) [> 4.432 = 7.387 < 9.604] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)S381.CB) [> 3.916 = 6.527 < 8.485] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)A263.CB) [> 4.123 = 6.872 < 8.934] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)A276.CB) [> 4.250 = 7.084 < 9.209] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)K203.CB) [> 3.144 = 5.240 < 6.812] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)L275.CB) [> 2.863 = 4.772 < 6.203] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)N328.CB) [> 4.638 = 7.730 < 10.050] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)H384.CB) [> 3.680 = 6.133 < 7.972] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E115.CB, (T0547)V131.CB) [> 4.478 = 7.464 < 9.703] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)V277.CB) [> 3.846 = 6.411 < 8.334] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)P426.CB) [> 3.933 = 6.555 < 8.521] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)D383.CB) [> 3.469 = 5.781 < 7.515] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)D380.CB) [> 4.200 = 7.000 < 9.100] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)D380.CB) [> 2.942 = 4.903 < 6.374] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)Y377.CB) [> 3.550 = 5.917 < 7.693] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)I140.CB) [> 4.045 = 6.742 < 8.765] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)K415.CB) [> 3.907 = 6.512 < 8.465] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L419.CB) [> 4.466 = 7.444 < 9.677] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)N425.CB) [> 3.527 = 5.879 < 7.642] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)K414.CB) [> 3.639 = 6.064 < 7.884] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)T413.CB) [> 3.751 = 6.251 < 8.127] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)L429.CB) [> 4.093 = 6.822 < 8.868] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)D380.CB) [> 3.653 = 6.088 < 7.914] w=0.173 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)N265.CB) [> 3.893 = 6.488 < 8.434] w=0.162 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)K283.CB) [> 4.018 = 6.697 < 8.706] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)S445.CB) [> 4.608 = 7.680 < 9.983] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)L391.CB) [> 3.762 = 6.270 < 8.151] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)K357.CB) [> 4.546 = 7.577 < 9.851] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E37.CB, (T0547)S372.CB) [> 3.442 = 5.737 < 7.458] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)A431.CB) [> 3.435 = 5.725 < 7.442] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)S381.CB) [> 3.112 = 5.187 < 6.743] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)I382.CB) [> 3.123 = 5.204 < 6.766] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I269.CB) [> 4.572 = 7.621 < 9.907] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)A326.CB) [> 4.614 = 7.690 < 9.997] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)I238.CB) [> 3.613 = 6.022 < 7.829] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)E314.CB) [> 3.837 = 6.395 < 8.314] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K304.CB, (T0547)E314.CB) [> 3.527 = 5.878 < 7.641] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)L234.CB) [> 3.754 = 6.256 < 8.133] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)Y43.CB) [> 3.585 = 5.975 < 7.767] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)A431.CB) [> 3.944 = 6.573 < 8.545] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)K414.CB) [> 4.610 = 7.684 < 9.989] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)I319.CB) [> 4.186 = 6.977 < 9.070] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)V184.CB) [> 4.738 = 7.897 < 10.266] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)G272.CA) [> 4.686 = 7.810 < 10.153] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)A114.CB) [> 4.597 = 7.661 < 9.960] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)G199.CA) [> 3.677 = 6.128 < 7.966] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)G235.CA) [> 4.129 = 6.881 < 8.945] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)D428.CB) [> 3.370 = 5.617 < 7.302] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)A427.CB) [> 4.325 = 7.209 < 9.372] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)I230.CB) [> 4.512 = 7.520 < 9.776] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)P178.CB) [> 4.155 = 6.926 < 9.004] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)R288.CB) [> 3.719 = 6.198 < 8.058] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)L411.CB) [> 4.152 = 6.919 < 8.995] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)P426.CB) [> 3.519 = 5.865 < 7.624] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)A170.CB) [> 3.712 = 6.186 < 8.042] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)L419.CB) [> 4.285 = 7.142 < 9.285] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)A170.CB) [> 4.041 = 6.736 < 8.756] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)I317.CB) [> 3.643 = 6.071 < 7.893] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)A307.CB) [> 4.090 = 6.817 < 8.862] w=0.159 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)A147.CB) [> 3.906 = 6.510 < 8.463] w=0.147 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)S539.CB) [> 3.342 = 5.570 < 7.241] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)A431.CB) [> 4.149 = 6.915 < 8.990] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)I432.CB) [> 3.919 = 6.532 < 8.491] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)L430.CB) [> 4.201 = 7.002 < 9.103] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)D428.CB) [> 4.136 = 6.894 < 8.962] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)L408.CB) [> 4.115 = 6.858 < 8.916] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)I31.CB) [> 3.750 = 6.250 < 8.125] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)I333.CB) [> 4.097 = 6.829 < 8.878] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)V442.CB) [> 3.929 = 6.549 < 8.514] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)Q448.CB) [> 3.376 = 5.627 < 7.316] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)F444.CB) [> 3.100 = 5.166 < 6.716] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I540.CB) [> 4.041 = 6.735 < 8.756] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I537.CB) [> 4.176 = 6.961 < 9.049] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I537.CB) [> 2.969 = 4.948 < 6.432] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)I537.CB) [> 3.995 = 6.659 < 8.657] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L266.CB) [> 4.530 = 7.550 < 9.815] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L275.CB) [> 4.348 = 7.247 < 9.422] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)L351.CB) [> 3.458 = 5.763 < 7.491] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)H233.CB) [> 4.501 = 7.501 < 9.751] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)L303.CB) [> 4.260 = 7.100 < 9.230] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)A427.CB) [> 4.082 = 6.803 < 8.844] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L258.CB) [> 3.183 = 5.306 < 6.897] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)R259.CB) [> 4.175 = 6.958 < 9.046] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)V397.CB) [> 3.330 = 5.550 < 7.215] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)P335.CB) [> 3.769 = 6.282 < 8.166] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)P178.CB) [> 4.220 = 7.033 < 9.142] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)V131.CB) [> 4.470 = 7.450 < 9.685] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)T154.CB) [> 4.398 = 7.329 < 9.528] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L430.CB) [> 4.441 = 7.402 < 9.623] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)T409.CB) [> 4.677 = 7.795 < 10.134] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)L430.CB) [> 4.315 = 7.191 < 9.349] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)L411.CB) [> 4.689 = 7.815 < 10.159] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)T390.CB) [> 3.585 = 5.975 < 7.768] w=0.146 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)N270.CB) [> 4.472 = 7.453 < 9.688] w=0.137 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)F79.CB) [> 2.900 = 4.834 < 6.284] w=0.135 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)I319.CB) [> 3.303 = 5.505 < 7.156] w=0.134 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)I319.CB) [> 3.324 = 5.540 < 7.202] w=0.134 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G199.CA, (T0547)L234.CB) [> 4.311 = 7.185 < 9.340] w=0.134 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)V547.CB) [> 4.013 = 6.689 < 8.696] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)V436.CB) [> 4.310 = 7.183 < 9.337] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)L420.CB) [> 3.942 = 6.570 < 8.541] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)L420.CB) [> 3.933 = 6.555 < 8.522] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)G198.CA) [> 3.748 = 6.247 < 8.121] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)S287.CB) [> 3.382 = 5.637 < 7.328] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)D428.CB) [> 3.971 = 6.619 < 8.604] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)H410.CB) [> 4.141 = 6.902 < 8.973] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)S236.CB) [> 4.414 = 7.356 < 9.563] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)P315.CB) [> 3.774 = 6.290 < 8.177] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)L47.CB) [> 3.848 = 6.413 < 8.337] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)G45.CA) [> 3.440 = 5.733 < 7.453] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)P335.CB) [> 4.053 = 6.755 < 8.782] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)L411.CB) [> 4.585 = 7.642 < 9.935] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I537.CB) [> 4.138 = 6.896 < 8.965] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)V547.CB) [> 4.168 = 6.947 < 9.031] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I538.CB) [> 3.836 = 6.393 < 8.311] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)I540.CB) [> 3.814 = 6.357 < 8.265] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)I540.CB) [> 3.447 = 5.745 < 7.468] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)E548.CB) [> 3.457 = 5.762 < 7.490] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)A416.CB) [> 4.310 = 7.183 < 9.338] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)E406.CB) [> 4.553 = 7.589 < 9.866] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L258.CB) [> 4.481 = 7.469 < 9.709] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)H231.CB) [> 4.433 = 7.388 < 9.605] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)A268.CB) [> 4.606 = 7.677 < 9.980] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)I382.CB) [> 4.198 = 6.997 < 9.095] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)S449.CB) [> 3.765 = 6.275 < 8.158] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)M450.CB) [> 4.156 = 6.926 < 9.004] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)S555.CB) [> 3.917 = 6.528 < 8.487] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)K352.CB) [> 3.817 = 6.361 < 8.270] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)N404.CB) [> 4.682 = 7.803 < 10.144] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)V325.CB) [> 4.631 = 7.718 < 10.033] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)L429.CB) [> 3.634 = 6.056 < 7.873] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T390.CB, (T0547)N425.CB) [> 4.548 = 7.580 < 9.854] w=0.133 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G199.CA) [> 4.236 = 7.060 < 9.178] w=0.122 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L248.CB) [> 3.905 = 6.508 < 8.460] w=0.121 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)G143.CA) [> 4.296 = 7.160 < 9.308] w=0.121 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)P315.CB) [> 3.832 = 6.387 < 8.303] w=0.121 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)N541.CB) [> 4.373 = 7.289 < 9.475] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)A427.CB) [> 4.305 = 7.175 < 9.328] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)F453.CB) [> 3.255 = 5.425 < 7.052] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)D452.CB) [> 3.911 = 6.518 < 8.473] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)V331.CB) [> 4.579 = 7.631 < 9.921] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)I269.CB) [> 4.329 = 7.215 < 9.379] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)M229.CB) [> 4.434 = 7.390 < 9.607] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)I317.CB) [> 3.742 = 6.236 < 8.107] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)G235.CA) [> 3.520 = 5.867 < 7.627] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)S236.CB) [> 3.769 = 6.282 < 8.167] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)K44.CB) [> 4.229 = 7.048 < 9.163] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)L47.CB) [> 3.745 = 6.242 < 8.115] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)V436.CB) [> 3.525 = 5.874 < 7.637] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)Q237.CB) [> 3.321 = 5.535 < 7.196] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)S539.CB) [> 4.055 = 6.759 < 8.786] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)E548.CB) [> 4.335 = 7.225 < 9.392] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)G549.CA) [> 4.084 = 6.806 < 8.848] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)L182.CB) [> 4.475 = 7.458 < 9.695] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)I412.CB) [> 4.333 = 7.222 < 9.388] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I412.CB) [> 4.526 = 7.543 < 9.806] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)F324.CB) [> 3.866 = 6.443 < 8.376] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)A416.CB) [> 3.805 = 6.342 < 8.245] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)L408.CB) [> 4.607 = 7.678 < 9.981] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)G273.CA) [> 4.528 = 7.547 < 9.811] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)N297.CB) [> 4.702 = 7.837 < 10.188] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)G549.CA) [> 3.439 = 5.732 < 7.452] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E115.CB, (T0547)T130.CB) [> 4.290 = 7.150 < 9.295] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)T409.CB) [> 4.390 = 7.317 < 9.512] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)H410.CB) [> 3.254 = 5.424 < 7.051] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F340.CB, (T0547)T409.CB) [> 3.413 = 5.688 < 7.395] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)A536.CB) [> 3.371 = 5.618 < 7.304] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)L411.CB) [> 4.180 = 6.966 < 9.056] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)M229.CB) [> 3.862 = 6.436 < 8.367] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)K203.CB) [> 3.325 = 5.542 < 7.205] w=0.120 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)A307.CB) [> 3.599 = 5.998 < 7.797] w=0.119 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)A296.CB) [> 4.662 = 7.771 < 10.102] w=0.109 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)L234.CB) [> 3.844 = 6.407 < 8.329] w=0.108 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)G549.CA) [> 2.898 = 4.830 < 6.279] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)E548.CB) [> 3.047 = 5.078 < 6.602] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)D452.CB) [> 3.997 = 6.662 < 8.661] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)S449.CB) [> 3.665 = 6.109 < 7.942] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)F453.CB) [> 3.846 = 6.410 < 8.334] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)K589.CB) [> 3.384 = 5.641 < 7.333] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)K589.CB) [> 3.574 = 5.957 < 7.744] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)F324.CB) [> 4.254 = 7.090 < 9.217] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)E546.CB) [> 3.405 = 5.675 < 7.378] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)I540.CB) [> 4.199 = 6.998 < 9.097] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)L408.CB) [> 3.848 = 6.413 < 8.337] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I538.CB) [> 3.791 = 6.319 < 8.215] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)M450.CB) [> 4.102 = 6.836 < 8.887] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)F453.CB) [> 3.944 = 6.573 < 8.545] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)V436.CB) [> 3.948 = 6.580 < 8.554] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)L234.CB) [> 3.668 = 6.114 < 7.948] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)F318.CB) [> 4.482 = 7.470 < 9.711] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)L429.CB) [> 4.368 = 7.281 < 9.465] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)L419.CB) [> 4.506 = 7.510 < 9.763] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)L391.CB) [> 3.619 = 6.032 < 7.841] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)L394.CB) [> 3.486 = 5.810 < 7.553] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)L313.CB) [> 3.643 = 6.071 < 7.892] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)L271.CB) [> 4.611 = 7.686 < 9.991] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L429.CB) [> 4.214 = 7.023 < 9.130] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L429.CB) [> 3.231 = 5.384 < 7.000] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)G235.CA) [> 4.027 = 6.712 < 8.726] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)L429.CB) [> 4.482 = 7.470 < 9.711] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)L411.CB) [> 4.493 = 7.489 < 9.735] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)I538.CB) [> 3.178 = 5.297 < 6.887] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)H410.CB) [> 2.906 = 4.844 < 6.297] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)I412.CB) [> 3.835 = 6.392 < 8.310] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)K414.CB) [> 2.955 = 4.925 < 6.402] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)T390.CB) [> 3.647 = 6.079 < 7.903] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)S381.CB) [> 3.912 = 6.520 < 8.476] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)I550.CB) [> 4.084 = 6.806 < 8.848] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)V191.CB) [> 4.228 = 7.047 < 9.162] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)A30.CB) [> 4.247 = 7.078 < 9.201] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)I31.CB) [> 3.091 = 5.152 < 6.697] w=0.106 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)G192.CA) [> 2.458 = 4.096 < 5.325] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)I319.CB) [> 4.518 = 7.530 < 9.788] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)Y545.CB) [> 3.105 = 5.175 < 6.727] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)E535.CB) [> 4.485 = 7.474 < 9.717] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)S381.CB) [> 3.588 = 5.980 < 7.775] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)I317.CB) [> 4.389 = 7.315 < 9.509] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)V191.CB) [> 4.159 = 6.931 < 9.011] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)T228.CB) [> 4.473 = 7.455 < 9.692] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)N179.CB) [> 4.596 = 7.661 < 9.959] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)K415.CB) [> 4.487 = 7.479 < 9.723] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)K415.CB) [> 4.665 = 7.775 < 10.108] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)I540.CB) [> 3.517 = 5.862 < 7.620] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)F324.CB) [> 3.862 = 6.437 < 8.368] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)F453.CB) [> 3.681 = 6.135 < 7.976] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)L391.CB) [> 3.903 = 6.506 < 8.457] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)A427.CB) [> 4.514 = 7.523 < 9.779] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)V300.CB) [> 3.690 = 6.150 < 7.995] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L429.CB) [> 3.503 = 5.839 < 7.591] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L429.CB) [> 3.319 = 5.532 < 7.191] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)G549.CA) [> 3.590 = 5.983 < 7.778] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)V547.CB) [> 3.898 = 6.497 < 8.447] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)A536.CB) [> 3.587 = 5.978 < 7.771] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)V584.CB) [> 1.994 = 3.323 < 4.320] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)D312.CB) [> 4.424 = 7.374 < 9.586] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)G272.CA) [> 4.545 = 7.576 < 9.848] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L313.CB) [> 3.398 = 5.663 < 7.361] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)G272.CA) [> 4.290 = 7.150 < 9.296] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R137.CB, (T0547)I166.CB) [> 3.042 = 5.070 < 6.591] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)L375.CB) [> 2.713 = 4.522 < 5.879] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I538.CB) [> 4.147 = 6.911 < 8.985] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I153.CB) [> 4.360 = 7.266 < 9.446] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L430.CB) [> 3.721 = 6.202 < 8.062] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)L389.CB) [> 3.827 = 6.378 < 8.292] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)K267.CB) [> 4.121 = 6.869 < 8.930] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)A326.CB) [> 3.828 = 6.380 < 8.294] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)S197.CB) [> 2.971 = 4.951 < 6.437] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)I319.CB) [> 4.686 = 7.811 < 10.154] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)I31.CB) [> 3.975 = 6.625 < 8.613] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)I32.CB) [> 3.217 = 5.362 < 6.971] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T390.CB, (T0547)P426.CB) [> 4.453 = 7.422 < 9.649] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)N328.CB) [> 4.440 = 7.401 < 9.621] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)L430.CB) [> 4.128 = 6.881 < 8.945] w=0.093 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)F79.CB) [> 3.200 = 5.333 < 6.932] w=0.084 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)I157.CB) [> 4.413 = 7.355 < 9.562] w=0.084 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G198.CA) [> 3.741 = 6.235 < 8.106] w=0.081 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)K543.CB) [> 3.380 = 5.634 < 7.324] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)A536.CB) [> 3.882 = 6.470 < 8.411] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)E535.CB) [> 3.317 = 5.528 < 7.187] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)A536.CB) [> 3.831 = 6.385 < 8.301] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)E535.CB) [> 4.235 = 7.058 < 9.175] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)E535.CB) [> 3.802 = 6.336 < 8.237] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)I538.CB) [> 3.720 = 6.200 < 8.060] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)I537.CB) [> 4.508 = 7.513 < 9.766] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)E535.CB) [> 3.980 = 6.634 < 8.624] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)I537.CB) [> 3.425 = 5.709 < 7.421] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)A536.CB) [> 4.589 = 7.649 < 9.944] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)E535.CB) [> 3.492 = 5.820 < 7.566] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I540.CB) [> 2.958 = 4.930 < 6.409] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)S539.CB) [> 4.679 = 7.798 < 10.137] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I538.CB) [> 2.763 = 4.604 < 5.986] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I537.CB) [> 4.085 = 6.808 < 8.850] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I540.CB) [> 3.957 = 6.594 < 8.573] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)S539.CB) [> 3.756 = 6.260 < 8.138] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I537.CB) [> 3.270 = 5.450 < 7.085] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I550.CB, (T0547)T559.CB) [> 3.401 = 5.668 < 7.368] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)G549.CA) [> 4.056 = 6.760 < 8.788] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I551.CB) [> 4.166 = 6.943 < 9.026] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I550.CB) [> 2.832 = 4.721 < 6.137] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)I317.CB) [> 4.505 = 7.508 < 9.761] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)K177.CB) [> 4.051 = 6.752 < 8.778] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)E406.CB) [> 3.839 = 6.398 < 8.318] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)A416.CB) [> 3.680 = 6.133 < 7.973] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)V397.CB) [> 3.944 = 6.574 < 8.546] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)N270.CB) [> 4.775 = 7.958 < 10.345] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)L258.CB) [> 4.001 = 6.668 < 8.669] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)D562.CB) [> 4.048 = 6.747 < 8.771] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)I538.CB) [> 3.392 = 5.653 < 7.349] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)L430.CB) [> 4.596 = 7.660 < 9.959] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)K246.CB) [> 4.203 = 7.005 < 9.107] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)I537.CB) [> 3.835 = 6.392 < 8.310] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)F51.CB) [> 3.461 = 5.768 < 7.499] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)I23.CB) [> 3.692 = 6.153 < 7.999] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)S539.CB) [> 3.861 = 6.435 < 8.366] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)H410.CB) [> 4.530 = 7.550 < 9.815] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)G549.CA) [> 4.560 = 7.600 < 9.880] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)I551.CB) [> 2.537 = 4.228 < 5.496] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)I537.CB) [> 4.269 = 7.115 < 9.249] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)A536.CB) [> 3.451 = 5.752 < 7.478] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)S539.CB) [> 3.167 = 5.278 < 6.861] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)I538.CB) [> 4.142 = 6.904 < 8.975] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)S539.CB) [> 3.667 = 6.111 < 7.945] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)I412.CB) [> 4.294 = 7.157 < 9.304] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)I317.CB) [> 4.436 = 7.394 < 9.612] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)L313.CB) [> 3.756 = 6.260 < 8.138] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)N265.CB) [> 4.061 = 6.769 < 8.799] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)K246.CB) [> 4.327 = 7.212 < 9.375] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)E240.CB) [> 4.066 = 6.776 < 8.809] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)K246.CB) [> 3.859 = 6.432 < 8.361] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)K203.CB) [> 4.614 = 7.691 < 9.998] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)L118.CB) [> 4.703 = 7.839 < 10.191] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)S321.CB) [> 4.763 = 7.939 < 10.321] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E72.CB, (T0547)V300.CB) [> 4.675 = 7.791 < 10.129] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)I317.CB) [> 3.114 = 5.190 < 6.746] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K68.CB, (T0547)A296.CB) [> 3.924 = 6.540 < 8.502] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A536.CB) [> 3.443 = 5.739 < 7.460] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)I537.CB) [> 4.048 = 6.746 < 8.770] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)K589.CB) [> 3.962 = 6.603 < 8.584] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)K353.CB) [> 4.550 = 7.583 < 9.858] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)G274.CA) [> 4.532 = 7.554 < 9.820] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)T291.CB) [> 3.621 = 6.035 < 7.846] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)N270.CB) [> 4.643 = 7.739 < 10.061] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)L234.CB) [> 3.179 = 5.299 < 6.888] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)A247.CB) [> 4.507 = 7.512 < 9.766] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)H242.CB) [> 4.181 = 6.968 < 9.058] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)T390.CB) [> 4.244 = 7.074 < 9.196] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)L408.CB) [> 4.550 = 7.584 < 9.859] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)S202.CB) [> 4.018 = 6.697 < 8.706] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L429.CB) [> 4.488 = 7.480 < 9.724] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)L182.CB) [> 4.772 = 7.953 < 10.339] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)H410.CB) [> 4.649 = 7.748 < 10.072] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)T239.CB) [> 2.776 = 4.627 < 6.015] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)K246.CB) [> 3.986 = 6.643 < 8.635] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)E240.CB) [> 3.583 = 5.972 < 7.763] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)I23.CB) [> 3.736 = 6.227 < 8.095] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)P426.CB) [> 4.434 = 7.390 < 9.608] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)F204.CB) [> 4.516 = 7.527 < 9.785] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)K414.CB) [> 4.569 = 7.615 < 9.900] w=0.080 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)G272.CA) [> 4.596 = 7.659 < 9.957] w=0.070 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)N132.CB) [> 4.592 = 7.654 < 9.950] w=0.069 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)I540.CB) [> 3.782 = 6.303 < 8.194] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L446.CB, (T0547)I537.CB) [> 3.668 = 6.113 < 7.947] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)K203.CB) [> 3.878 = 6.464 < 8.403] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)G192.CA) [> 4.688 = 7.814 < 10.158] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)M229.CB) [> 4.443 = 7.404 < 9.626] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)F318.CB) [> 4.343 = 7.238 < 9.410] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)T409.CB) [> 4.227 = 7.045 < 9.159] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)L408.CB) [> 3.353 = 5.588 < 7.264] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)A536.CB) [> 3.511 = 5.852 < 7.607] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)F444.CB) [> 3.872 = 6.453 < 8.389] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)T239.CB) [> 4.494 = 7.490 < 9.737] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)I540.CB) [> 3.183 = 5.305 < 6.896] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)N541.CB) [> 3.756 = 6.260 < 8.138] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)V331.CB) [> 3.972 = 6.619 < 8.605] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)F51.CB) [> 3.234 = 5.389 < 7.006] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)L49.CB) [> 3.410 = 5.684 < 7.389] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)T409.CB) [> 3.769 = 6.282 < 8.166] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)F51.CB) [> 4.655 = 7.758 < 10.086] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)E546.CB) [> 3.477 = 5.796 < 7.535] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)S539.CB) [> 4.381 = 7.302 < 9.492] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)S539.CB) [> 3.539 = 5.899 < 7.669] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)I567.CB) [> 3.181 = 5.302 < 6.892] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)I567.CB) [> 2.391 = 3.985 < 5.180] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)I550.CB) [> 4.046 = 6.743 < 8.766] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)T559.CB) [> 3.804 = 6.340 < 8.241] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)I34.CB) [> 4.286 = 7.143 < 9.285] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)E314.CB) [> 4.438 = 7.396 < 9.615] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)I317.CB) [> 4.651 = 7.751 < 10.076] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)Q354.CB) [> 4.528 = 7.547 < 9.811] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)F324.CB) [> 4.129 = 6.882 < 8.946] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)N443.CB) [> 3.527 = 5.878 < 7.642] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)G421.CA) [> 3.185 = 5.309 < 6.902] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)K246.CB) [> 3.491 = 5.818 < 7.563] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)T228.CB) [> 4.321 = 7.201 < 9.361] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)I319.CB) [> 4.683 = 7.806 < 10.147] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)R439.CB) [> 3.606 = 6.010 < 7.813] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)H231.CB) [> 4.369 = 7.282 < 9.467] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)E552.CB) [> 3.651 = 6.085 < 7.910] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)F444.CB) [> 3.356 = 5.593 < 7.271] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)P176.CB) [> 3.906 = 6.509 < 8.462] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N141.CB, (T0547)P176.CB) [> 3.507 = 5.846 < 7.599] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)H410.CB) [> 4.478 = 7.464 < 9.703] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)F392.CB) [> 2.942 = 4.903 < 6.374] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)V331.CB) [> 3.750 = 6.251 < 8.126] w=0.066 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)T154.CB) [> 4.650 = 7.751 < 10.076] w=0.057 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G198.CA) [> 4.009 = 6.681 < 8.686] w=0.054 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)L441.CB) [> 3.872 = 6.454 < 8.390] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)R323.CB) [> 4.214 = 7.023 < 9.130] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)I537.CB) [> 3.569 = 5.948 < 7.733] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)G272.CA) [> 4.653 = 7.755 < 10.081] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)F444.CB) [> 3.826 = 6.376 < 8.289] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)F444.CB) [> 3.666 = 6.110 < 7.942] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)L408.CB) [> 4.601 = 7.668 < 9.969] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)V547.CB) [> 3.721 = 6.201 < 8.061] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)I538.CB) [> 4.640 = 7.733 < 10.053] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)I551.CB) [> 4.501 = 7.502 < 9.753] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)I537.CB) [> 4.116 = 6.860 < 8.917] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)T228.CB) [> 4.433 = 7.389 < 9.606] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)F444.CB) [> 3.675 = 6.124 < 7.962] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)P451.CB) [> 2.499 = 4.164 < 5.414] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)M450.CB) [> 2.766 = 4.609 < 5.992] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L560.CB) [> 3.573 = 5.955 < 7.741] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)L563.CB) [> 3.452 = 5.754 < 7.480] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)S539.CB) [> 4.708 = 7.846 < 10.200] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)V442.CB) [> 4.314 = 7.190 < 9.347] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)G549.CA) [> 3.296 = 5.493 < 7.141] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)L446.CB) [> 4.495 = 7.491 < 9.739] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)H233.CB) [> 4.190 = 6.983 < 9.078] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I412.CB) [> 4.403 = 7.338 < 9.540] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)A536.CB) [> 3.763 = 6.271 < 8.152] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)F51.CB) [> 4.632 = 7.720 < 10.036] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)A374.CB) [> 3.835 = 6.392 < 8.310] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)V331.CB) [> 4.548 = 7.581 < 9.855] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)M450.CB) [> 3.855 = 6.425 < 8.352] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I306.CB) [> 3.602 = 6.004 < 7.805] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)S236.CB) [> 4.357 = 7.262 < 9.440] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)G235.CA) [> 4.031 = 6.718 < 8.733] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)N443.CB) [> 4.107 = 6.845 < 8.898] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)Y440.CB) [> 3.651 = 6.085 < 7.911] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)Y440.CB) [> 4.016 = 6.693 < 8.701] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)N161.CB) [> 3.856 = 6.426 < 8.354] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)P426.CB) [> 4.375 = 7.291 < 9.478] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)N443.CB) [> 3.837 = 6.396 < 8.314] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)H53.CB) [> 3.050 = 5.084 < 6.609] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)V442.CB) [> 3.963 = 6.605 < 8.587] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)V442.CB) [> 2.914 = 4.857 < 6.313] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)I538.CB) [> 3.683 = 6.139 < 7.981] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)K246.CB) [> 4.382 = 7.304 < 9.495] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)L234.CB) [> 4.519 = 7.532 < 9.791] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)T239.CB) [> 3.157 = 5.262 < 6.840] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)E542.CB) [> 4.090 = 6.816 < 8.861] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)H410.CB) [> 4.223 = 7.038 < 9.149] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)K415.CB) [> 4.594 = 7.656 < 9.953] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)A416.CB) [> 3.330 = 5.550 < 7.215] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)A416.CB) [> 4.325 = 7.208 < 9.370] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)S477.CB) [> 4.225 = 7.042 < 9.155] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)S475.CB) [> 3.389 = 5.649 < 7.343] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)A476.CB) [> 3.194 = 5.324 < 6.921] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)S477.CB) [> 4.238 = 7.063 < 9.182] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)W479.CB) [> 3.780 = 6.300 < 8.190] w=0.053 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N201.CB, (T0547)G235.CA) [> 4.489 = 7.481 < 9.725] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)L139.CB) [> 4.572 = 7.621 < 9.907] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)Y290.CB) [> 3.772 = 6.287 < 8.173] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)P356.CB) [> 3.953 = 6.589 < 8.565] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)T207.CB) [> 4.654 = 7.756 < 10.083] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)P533.CB) [> 2.782 = 4.636 < 6.027] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)T534.CB) [> 2.545 = 4.241 < 5.513] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)V442.CB) [> 4.042 = 6.737 < 8.759] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)P426.CB) [> 3.607 = 6.011 < 7.814] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)P426.CB) [> 3.831 = 6.384 < 8.300] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)A536.CB) [> 4.147 = 6.912 < 8.986] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)I537.CB) [> 3.772 = 6.286 < 8.172] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I537.CB) [> 4.466 = 7.444 < 9.677] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I538.CB) [> 2.571 = 4.285 < 5.570] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)E535.CB) [> 3.613 = 6.022 < 7.829] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)A536.CB) [> 3.759 = 6.265 < 8.145] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)I538.CB) [> 3.994 = 6.657 < 8.654] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)E535.CB) [> 4.682 = 7.804 < 10.145] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)T534.CB) [> 3.940 = 6.567 < 8.537] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)A536.CB) [> 3.838 = 6.397 < 8.316] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)T534.CB) [> 2.806 = 4.677 < 6.081] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)A536.CB) [> 3.802 = 6.336 < 8.237] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)A536.CB) [> 4.521 = 7.534 < 9.795] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)K353.CB) [> 3.128 = 5.214 < 6.778] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)T228.CB) [> 4.442 = 7.403 < 9.623] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)I407.CB) [> 4.282 = 7.136 < 9.277] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)L385.CB) [> 3.529 = 5.882 < 7.646] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)G181.CA) [> 4.795 = 7.992 < 10.389] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)H233.CB) [> 4.737 = 7.896 < 10.264] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)I306.CB) [> 3.521 = 5.868 < 7.628] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)E546.CB) [> 4.591 = 7.652 < 9.948] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)D428.CB) [> 4.317 = 7.194 < 9.353] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)N152.CB) [> 4.126 = 6.876 < 8.939] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)I180.CB) [> 4.112 = 6.853 < 8.909] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)L441.CB) [> 3.807 = 6.345 < 8.248] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)L446.CB) [> 2.865 = 4.775 < 6.207] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)L446.CB) [> 4.511 = 7.519 < 9.775] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I319.CB) [> 4.671 = 7.785 < 10.121] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)I193.CB) [> 3.763 = 6.271 < 8.152] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)A536.CB) [> 4.234 = 7.056 < 9.173] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)I319.CB) [> 4.778 = 7.964 < 10.353] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)L563.CB) [> 3.673 = 6.121 < 7.957] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)E535.CB) [> 2.963 = 4.939 < 6.420] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)E320.CB) [> 4.332 = 7.220 < 9.386] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)N105.CB) [> 3.458 = 5.763 < 7.491] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)N105.CB) [> 3.047 = 5.078 < 6.601] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)N105.CB) [> 4.079 = 6.799 < 8.838] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)N105.CB) [> 2.419 = 4.032 < 5.242] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)L248.CB) [> 4.742 = 7.904 < 10.275] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)T228.CB) [> 4.250 = 7.084 < 9.209] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)H187.CB) [> 4.394 = 7.323 < 9.519] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)L206.CB) [> 3.620 = 6.033 < 7.843] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L429.CB) [> 3.935 = 6.558 < 8.526] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L429.CB) [> 4.034 = 6.723 < 8.740] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)D428.CB) [> 3.628 = 6.046 < 7.860] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)L429.CB) [> 3.582 = 5.969 < 7.760] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)L563.CB) [> 3.268 = 5.446 < 7.080] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)D564.CB) [> 4.083 = 6.805 < 8.847] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)I556.CB) [> 4.514 = 7.523 < 9.780] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L557.CB) [> 3.685 = 6.141 < 7.984] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L560.CB) [> 4.050 = 6.751 < 8.776] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)E535.CB) [> 4.636 = 7.727 < 10.045] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)N201.CB) [> 3.034 = 5.057 < 6.574] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)G199.CA) [> 4.202 = 7.004 < 9.105] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)S236.CB) [> 3.819 = 6.364 < 8.274] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)A276.CB) [> 3.792 = 6.320 < 8.216] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)F324.CB) [> 3.837 = 6.396 < 8.315] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)A330.CB) [> 4.738 = 7.896 < 10.265] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)E552.CB) [> 3.818 = 6.363 < 8.271] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I302.CB) [> 4.419 = 7.366 < 9.576] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)W454.CB) [> 4.612 = 7.687 < 9.993] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)N305.CB) [> 4.770 = 7.950 < 10.335] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)I319.CB) [> 4.668 = 7.779 < 10.113] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)K414.CB) [> 3.518 = 5.863 < 7.621] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)F460.CB) [> 2.825 = 4.709 < 6.121] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)I550.CB) [> 3.817 = 6.362 < 8.270] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)S321.CB) [> 4.735 = 7.892 < 10.260] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L441.CB) [> 4.354 = 7.257 < 9.434] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)E158.CB) [> 4.365 = 7.275 < 9.458] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L441.CB) [> 3.658 = 6.097 < 7.926] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)V442.CB) [> 3.485 = 5.809 < 7.551] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)L419.CB) [> 4.404 = 7.339 < 9.541] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)L446.CB) [> 3.927 = 6.545 < 8.509] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)R183.CB) [> 3.900 = 6.500 < 8.449] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)H329.CB) [> 4.632 = 7.721 < 10.037] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)V331.CB) [> 4.571 = 7.618 < 9.903] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y25.CB, (T0547)I34.CB) [> 3.998 = 6.663 < 8.662] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)L47.CB) [> 4.185 = 6.975 < 9.068] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)L49.CB) [> 4.364 = 7.273 < 9.455] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)I333.CB) [> 4.407 = 7.345 < 9.549] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)V325.CB) [> 4.611 = 7.686 < 9.991] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)A536.CB) [> 4.618 = 7.696 < 10.005] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)A536.CB) [> 3.822 = 6.371 < 8.282] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)I538.CB) [> 3.388 = 5.647 < 7.341] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)S539.CB) [> 4.655 = 7.759 < 10.087] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)N541.CB) [> 4.423 = 7.372 < 9.583] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)A536.CB) [> 3.869 = 6.448 < 8.382] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E12.CB, (T0547)N328.CB) [> 4.660 = 7.767 < 10.097] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)I269.CB) [> 4.571 = 7.618 < 9.903] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I15.CB, (T0547)K28.CB) [> 4.474 = 7.457 < 9.694] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)C22.CB) [> 3.754 = 6.256 < 8.133] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)Y545.CB) [> 3.761 = 6.269 < 8.149] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)G544.CA) [> 3.826 = 6.377 < 8.290] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)D480.CB) [> 2.728 = 4.547 < 5.912] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)D480.CB) [> 2.514 = 4.190 < 5.447] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)W479.CB) [> 3.870 = 6.450 < 8.385] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)D480.CB) [> 3.997 = 6.662 < 8.661] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)W479.CB) [> 2.672 = 4.453 < 5.789] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)W479.CB) [> 4.043 = 6.738 < 8.760] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)I478.CB) [> 3.215 = 5.359 < 6.967] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)S477.CB) [> 3.896 = 6.493 < 8.441] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A476.CB) [> 4.405 = 7.342 < 9.545] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)W479.CB) [> 3.376 = 5.626 < 7.314] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)W479.CB) [> 2.950 = 4.916 < 6.391] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)W479.CB) [> 3.665 = 6.108 < 7.941] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)I478.CB) [> 4.028 = 6.714 < 8.728] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)S477.CB) [> 4.338 = 7.230 < 9.399] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)I478.CB) [> 3.168 = 5.280 < 6.864] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)I478.CB) [> 3.886 = 6.477 < 8.421] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)S477.CB) [> 4.506 = 7.511 < 9.764] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)A476.CB) [> 4.617 = 7.695 < 10.003] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)Y290.CB) [> 3.860 = 6.433 < 8.363] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)A476.CB) [> 4.005 = 6.675 < 8.677] w=0.040 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L271.CB) [> 4.566 = 7.609 < 9.892] w=0.031 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)I142.CB) [> 4.097 = 6.828 < 8.876] w=0.028 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)N443.CB) [> 4.029 = 6.715 < 8.729] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)V442.CB) [> 4.534 = 7.557 < 9.824] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)N443.CB) [> 2.886 = 4.809 < 6.252] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)F444.CB) [> 4.791 = 7.984 < 10.380] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)V442.CB) [> 3.336 = 5.561 < 7.229] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)N443.CB) [> 4.192 = 6.986 < 9.082] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)F444.CB) [> 3.261 = 5.435 < 7.065] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)I538.CB) [> 2.724 = 4.540 < 5.903] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)T534.CB) [> 4.670 = 7.783 < 10.118] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)N141.CB) [> 4.617 = 7.695 < 10.004] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)G421.CA) [> 4.464 = 7.439 < 9.671] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)L155.CB) [> 3.696 = 6.160 < 8.008] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)L429.CB) [> 2.971 = 4.952 < 6.438] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)P533.CB) [> 2.991 = 4.986 < 6.481] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)P533.CB) [> 3.690 = 6.149 < 7.994] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)I538.CB) [> 4.113 = 6.855 < 8.911] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)I317.CB) [> 4.611 = 7.685 < 9.991] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L441.CB) [> 4.226 = 7.043 < 9.156] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S539.CB, (T0547)D558.CB) [> 4.207 = 7.012 < 9.116] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V504.CB, (T0547)T534.CB) [> 3.895 = 6.492 < 8.440] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D503.CB, (T0547)T534.CB) [> 3.037 = 5.062 < 6.581] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)V502.CB) [> 3.700 = 6.166 < 8.016] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)A536.CB) [> 4.583 = 7.638 < 9.930] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)D480.CB) [> 3.804 = 6.340 < 8.243] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)W479.CB) [> 3.265 = 5.442 < 7.075] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)I478.CB) [> 3.384 = 5.641 < 7.333] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)S477.CB) [> 4.138 = 6.897 < 8.966] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)W479.CB) [> 3.529 = 5.881 < 7.646] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)D480.CB) [> 3.604 = 6.007 < 7.810] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)W479.CB) [> 3.155 = 5.259 < 6.837] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)S477.CB) [> 3.812 = 6.353 < 8.259] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)S477.CB) [> 4.216 = 7.027 < 9.135] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)W479.CB) [> 4.059 = 6.765 < 8.794] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)I478.CB) [> 4.630 = 7.717 < 10.033] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)S477.CB) [> 3.510 = 5.851 < 7.606] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)I478.CB) [> 3.579 = 5.965 < 7.755] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)S477.CB) [> 4.661 = 7.769 < 10.099] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I481.CB) [> 3.079 = 5.131 < 6.670] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L365.CB) [> 2.314 = 3.857 < 5.014] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D41.CB, (T0547)I407.CB) [> 3.858 = 6.429 < 8.358] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)A553.CB) [> 4.031 = 6.718 < 8.734] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q458.CB, (T0547)A553.CB) [> 3.366 = 5.611 < 7.294] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)N459.CB) [> 3.576 = 5.960 < 7.748] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)L456.CB) [> 3.597 = 5.995 < 7.794] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)N459.CB) [> 3.621 = 6.035 < 7.845] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L456.CB) [> 4.161 = 6.936 < 9.016] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)F453.CB) [> 2.658 = 4.431 < 5.760] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)F453.CB) [> 3.887 = 6.478 < 8.422] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)W454.CB) [> 2.847 = 4.745 < 6.168] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L456.CB) [> 4.054 = 6.757 < 8.784] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)F444.CB) [> 4.063 = 6.771 < 8.803] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)S539.CB) [> 3.107 = 5.178 < 6.731] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)S539.CB) [> 3.837 = 6.395 < 8.313] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)S539.CB) [> 4.540 = 7.567 < 9.837] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)I481.CB) [> 3.476 = 5.793 < 7.531] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)D480.CB) [> 4.603 = 7.671 < 9.973] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)W479.CB) [> 2.996 = 4.994 < 6.492] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I478.CB) [> 4.081 = 6.802 < 8.843] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I481.CB) [> 3.789 = 6.316 < 8.210] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)D480.CB) [> 3.610 = 6.017 < 7.822] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)W479.CB) [> 4.332 = 7.220 < 9.386] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I478.CB) [> 3.242 = 5.404 < 7.025] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)V502.CB) [> 3.659 = 6.099 < 7.928] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)I481.CB) [> 2.280 = 3.800 < 4.940] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)D480.CB) [> 4.400 = 7.334 < 9.534] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)I481.CB) [> 4.307 = 7.179 < 9.332] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)D480.CB) [> 3.388 = 5.647 < 7.342] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)A416.CB) [> 4.011 = 6.686 < 8.691] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)V504.CB) [> 3.918 = 6.531 < 8.490] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)V502.CB) [> 3.755 = 6.258 < 8.136] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)I481.CB) [> 4.203 = 7.004 < 9.105] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)V504.CB) [> 3.874 = 6.457 < 8.394] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)R323.CB) [> 4.780 = 7.967 < 10.357] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)E561.CB) [> 3.063 = 5.104 < 6.635] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)A536.CB) [> 3.787 = 6.312 < 8.205] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I407.CB) [> 4.688 = 7.814 < 10.158] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)V331.CB) [> 4.673 = 7.788 < 10.124] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)T534.CB) [> 4.735 = 7.891 < 10.259] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)P533.CB) [> 3.788 = 6.313 < 8.207] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)P533.CB) [> 3.502 = 5.837 < 7.588] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)F444.CB) [> 4.209 = 7.016 < 9.120] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)F444.CB) [> 4.670 = 7.784 < 10.119] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)L560.CB) [> 3.530 = 5.884 < 7.649] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)D428.CB) [> 3.907 = 6.511 < 8.465] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)T534.CB) [> 4.695 = 7.825 < 10.172] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)F444.CB) [> 4.733 = 7.889 < 10.255] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)E406.CB) [> 4.299 = 7.165 < 9.315] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)S321.CB) [> 4.346 = 7.243 < 9.416] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)S202.CB) [> 3.171 = 5.285 < 6.870] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)N443.CB) [> 4.294 = 7.156 < 9.303] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)I538.CB) [> 4.517 = 7.528 < 9.787] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)L563.CB) [> 4.244 = 7.073 < 9.195] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)P426.CB) [> 3.716 = 6.194 < 8.052] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)H532.CB) [> 3.090 = 5.149 < 6.694] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)P533.CB) [> 2.824 = 4.706 < 6.118] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)P533.CB) [> 3.717 = 6.196 < 8.054] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)Y565.CB) [> 4.208 = 7.013 < 9.117] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)I269.CB) [> 4.647 = 7.746 < 10.069] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)S381.CB) [> 3.312 = 5.520 < 7.176] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)K414.CB) [> 4.677 = 7.794 < 10.133] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)P335.CB) [> 4.384 = 7.307 < 9.499] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)L429.CB) [> 4.128 = 6.880 < 8.944] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)D428.CB) [> 3.812 = 6.354 < 8.260] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)A553.CB) [> 2.949 = 4.915 < 6.389] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)I538.CB) [> 4.302 = 7.170 < 9.320] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)A553.CB) [> 2.981 = 4.969 < 6.459] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)N124.CB) [> 4.757 = 7.928 < 10.307] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L271.CB) [> 4.545 = 7.575 < 9.847] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)N270.CB) [> 4.560 = 7.601 < 9.881] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)I269.CB) [> 4.239 = 7.065 < 9.185] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G272.CA) [> 4.678 = 7.796 < 10.135] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)D480.CB) [> 4.703 = 7.839 < 10.190] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)W479.CB) [> 3.636 = 6.060 < 7.878] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)S477.CB) [> 3.567 = 5.945 < 7.728] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)A476.CB) [> 4.800 = 8.000 < 10.400] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)S539.CB) [> 3.833 = 6.388 < 8.305] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)A476.CB) [> 2.647 = 4.412 < 5.736] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)S475.CB) [> 4.348 = 7.246 < 9.420] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)P356.CB) [> 4.786 = 7.977 < 10.370] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)S539.CB) [> 3.399 = 5.666 < 7.365] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)D428.CB) [> 4.739 = 7.898 < 10.267] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)K353.CB) [> 4.723 = 7.872 < 10.234] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L408.CB) [> 4.743 = 7.906 < 10.277] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)I538.CB) [> 4.672 = 7.787 < 10.124] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)D469.CB) [> 3.043 = 5.072 < 6.593] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)F453.CB) [> 4.702 = 7.836 < 10.187] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)V584.CB) [> 4.579 = 7.631 < 9.921] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)W454.CB) [> 4.111 = 6.852 < 8.907] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L271.CB) [> 3.950 = 6.584 < 8.559] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)S236.CB) [> 2.228 = 3.713 < 4.827] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)Y363.CB) [> 3.437 = 5.728 < 7.446] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)L362.CB) [> 4.109 = 6.849 < 8.904] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)K246.CB) [> 3.849 = 6.416 < 8.340] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)N289.CB) [> 4.313 = 7.189 < 9.346] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)S485.CB) [> 2.847 = 4.744 < 6.168] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)D484.CB) [> 2.792 = 4.653 < 6.050] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)C483.CB) [> 3.686 = 6.144 < 7.987] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)T482.CB) [> 3.642 = 6.070 < 7.890] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)I538.CB) [> 4.600 = 7.667 < 9.967] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)C483.CB) [> 3.032 = 5.053 < 6.569] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)C483.CB) [> 3.889 = 6.481 < 8.426] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)T482.CB) [> 2.612 = 4.353 < 5.660] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)I481.CB) [> 4.068 = 6.779 < 8.813] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)L441.CB) [> 3.626 = 6.044 < 7.857] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)C483.CB) [> 3.787 = 6.311 < 8.205] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I481.CB) [> 3.142 = 5.237 < 6.808] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I481.CB) [> 4.034 = 6.724 < 8.741] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I481.CB) [> 3.415 = 5.692 < 7.400] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)L394.CB) [> 3.384 = 5.640 < 7.332] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)H233.CB) [> 4.472 = 7.454 < 9.690] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)H231.CB) [> 4.595 = 7.658 < 9.956] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)L441.CB) [> 3.824 = 6.374 < 8.286] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)C483.CB) [> 4.670 = 7.784 < 10.119] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)H233.CB) [> 4.658 = 7.764 < 10.093] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L365.CB) [> 4.784 = 7.973 < 10.366] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)A276.CB) [> 3.550 = 5.917 < 7.692] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N11.CB, (T0547)L411.CB) [> 3.776 = 6.294 < 8.182] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)E278.CB) [> 3.484 = 5.807 < 7.549] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)V277.CB) [> 4.547 = 7.578 < 9.852] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)N284.CB) [> 4.354 = 7.256 < 9.433] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)E278.CB) [> 2.897 = 4.828 < 6.277] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)R173.CB) [> 4.175 = 6.959 < 9.046] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)L430.CB) [> 4.078 = 6.797 < 8.837] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)K415.CB) [> 4.585 = 7.642 < 9.934] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)R173.CB) [> 4.270 = 7.117 < 9.252] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y25.CB, (T0547)D480.CB) [> 4.137 = 6.895 < 8.963] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y25.CB, (T0547)W479.CB) [> 3.551 = 5.918 < 7.693] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y25.CB, (T0547)H53.CB) [> 4.536 = 7.560 < 9.828] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y25.CB, (T0547)V35.CB) [> 4.794 = 7.990 < 10.387] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)D480.CB) [> 3.496 = 5.827 < 7.575] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)W479.CB) [> 4.705 = 7.841 < 10.194] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)D480.CB) [> 4.584 = 7.640 < 9.932] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)D480.CB) [> 3.252 = 5.420 < 7.047] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)W479.CB) [> 4.023 = 6.704 < 8.716] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)P52.CB) [> 3.612 = 6.019 < 7.825] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N18.CB, (T0547)Y122.CB) [> 3.939 = 6.565 < 8.535] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)L441.CB) [> 3.243 = 5.404 < 7.025] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)L430.CB) [> 4.526 = 7.543 < 9.806] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)E320.CB) [> 4.566 = 7.610 < 9.893] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)F392.CB) [> 4.453 = 7.421 < 9.647] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)I537.CB) [> 3.659 = 6.098 < 7.927] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)H329.CB) [> 3.370 = 5.617 < 7.301] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N11.CB, (T0547)F51.CB) [> 4.178 = 6.964 < 9.053] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E12.CB, (T0547)F51.CB) [> 2.881 = 4.802 < 6.243] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)K28.CB) [> 4.327 = 7.212 < 9.375] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)F51.CB) [> 3.987 = 6.645 < 8.639] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)H53.CB) [> 4.586 = 7.643 < 9.936] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)P533.CB) [> 3.938 = 6.563 < 8.531] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)P533.CB) [> 2.943 = 4.906 < 6.377] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)E278.CB) [> 2.927 = 4.878 < 6.341] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)Y279.CB) [> 4.079 = 6.798 < 8.838] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)N328.CB) [> 4.428 = 7.379 < 9.593] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)L411.CB) [> 3.026 = 5.043 < 6.555] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)I412.CB) [> 3.480 = 5.801 < 7.541] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)V331.CB) [> 4.366 = 7.277 < 9.460] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)L411.CB) [> 3.203 = 5.339 < 6.941] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)I412.CB) [> 4.640 = 7.733 < 10.053] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)K246.CB) [> 3.877 = 6.462 < 8.400] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)I537.CB) [> 4.696 = 7.827 < 10.176] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)N328.CB) [> 4.521 = 7.535 < 9.796] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)F51.CB) [> 2.805 = 4.675 < 6.077] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)H53.CB) [> 3.290 = 5.483 < 7.128] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)F51.CB) [> 4.626 = 7.710 < 10.023] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)I34.CB) [> 3.675 = 6.124 < 7.962] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)T534.CB) [> 3.438 = 5.730 < 7.449] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)T534.CB) [> 3.793 = 6.322 < 8.219] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)I238.CB) [> 4.708 = 7.847 < 10.202] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)L515.CB) [> 3.146 = 5.243 < 6.816] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)F514.CB) [> 3.551 = 5.919 < 7.694] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)L515.CB) [> 3.822 = 6.370 < 8.281] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)F514.CB) [> 3.804 = 6.339 < 8.241] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)F514.CB) [> 3.520 = 5.867 < 7.628] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)F513.CB) [> 3.446 = 5.743 < 7.466] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)G512.CA) [> 3.715 = 6.192 < 8.050] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)G512.CA) [> 4.363 = 7.272 < 9.453] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)R474.CB) [> 3.683 = 6.138 < 7.979] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)P52.CB) [> 3.822 = 6.371 < 8.282] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)S475.CB) [> 4.637 = 7.728 < 10.047] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)L574.CB) [> 3.167 = 5.278 < 6.861] w=0.027 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S202.CB, (T0547)H233.CB) [> 3.313 = 5.522 < 7.179] w=0.015 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)I319.CB) [> 4.571 = 7.618 < 9.903] w=0.015 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)F460.CB) [> 4.522 = 7.537 < 9.798] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)D428.CB) [> 3.805 = 6.341 < 8.244] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)F460.CB) [> 3.228 = 5.380 < 6.995] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)T473.CB) [> 4.474 = 7.457 < 9.695] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)E471.CB) [> 2.659 = 4.432 < 5.762] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)T473.CB) [> 3.711 = 6.186 < 8.041] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)P461.CB) [> 3.982 = 6.637 < 8.629] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)P461.CB) [> 2.824 = 4.706 < 6.118] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)F460.CB) [> 3.839 = 6.398 < 8.318] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L351.CB) [> 4.305 = 7.175 < 9.328] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)P461.CB) [> 4.749 = 7.915 < 10.290] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)F460.CB) [> 3.874 = 6.456 < 8.393] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)P472.CB) [> 2.902 = 4.836 < 6.287] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)P472.CB) [> 4.490 = 7.484 < 9.729] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)K415.CB) [> 1.449 = 2.414 < 3.139] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)S475.CB) [> 4.697 = 7.828 < 10.176] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)R474.CB) [> 3.635 = 6.059 < 7.877] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)T473.CB) [> 4.476 = 7.460 < 9.697] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)P472.CB) [> 3.687 = 6.145 < 7.988] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)A476.CB) [> 3.210 = 5.350 < 6.955] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)S475.CB) [> 2.497 = 4.161 < 5.409] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)R474.CB) [> 2.735 = 4.559 < 5.926] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)I538.CB) [> 4.082 = 6.803 < 8.844] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)A476.CB) [> 4.123 = 6.872 < 8.933] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)S475.CB) [> 4.515 = 7.525 < 9.782] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)A476.CB) [> 3.953 = 6.589 < 8.566] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)A476.CB) [> 3.650 = 6.084 < 7.909] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)S539.CB) [> 2.745 = 4.576 < 5.949] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)I538.CB) [> 3.710 = 6.184 < 8.039] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)I537.CB) [> 4.380 = 7.300 < 9.490] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)A536.CB) [> 3.005 = 5.009 < 6.511] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)T531.CB) [> 4.489 = 7.482 < 9.727] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)F530.CB) [> 3.581 = 5.968 < 7.758] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)S539.CB) [> 4.771 = 7.952 < 10.338] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)N443.CB) [> 3.277 = 5.462 < 7.100] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)V442.CB) [> 4.311 = 7.185 < 9.340] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L441.CB) [> 2.879 = 4.798 < 6.237] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L441.CB) [> 4.713 = 7.855 < 10.212] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)Y565.CB) [> 4.110 = 6.849 < 8.904] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)Q458.CB) [> 3.728 = 6.213 < 8.077] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)N459.CB) [> 3.736 = 6.226 < 8.094] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)Q458.CB) [> 4.529 = 7.548 < 9.812] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)I462.CB) [> 4.126 = 6.877 < 8.939] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)L563.CB) [> 4.152 = 6.920 < 8.997] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)A536.CB) [> 4.677 = 7.795 < 10.134] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)I481.CB) [> 4.727 = 7.878 < 10.241] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)Y491.CB) [> 4.280 = 7.134 < 9.274] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)Y491.CB) [> 3.660 = 6.101 < 7.931] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)S490.CB) [> 4.534 = 7.557 < 9.824] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)S492.CB) [> 2.838 = 4.729 < 6.148] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)S492.CB) [> 3.700 = 6.166 < 8.016] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)S381.CB) [> 3.962 = 6.603 < 8.583] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)S485.CB) [> 4.008 = 6.680 < 8.684] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)S485.CB) [> 2.331 = 3.885 < 5.051] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)T482.CB) [> 4.438 = 7.396 < 9.615] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)S492.CB) [> 4.490 = 7.483 < 9.728] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)T482.CB) [> 4.258 = 7.096 < 9.225] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)K357.CB) [> 4.798 = 7.997 < 10.396] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)I478.CB) [> 4.328 = 7.214 < 9.378] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)D480.CB) [> 3.680 = 6.133 < 7.972] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)W479.CB) [> 2.634 = 4.389 < 5.706] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)N270.CB) [> 4.527 = 7.544 < 9.807] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)N270.CB) [> 4.602 = 7.669 < 9.970] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)H231.CB) [> 4.590 = 7.651 < 9.946] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)G181.CA) [> 4.757 = 7.929 < 10.307] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)T156.CB) [> 4.388 = 7.313 < 9.507] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)L155.CB) [> 4.757 = 7.928 < 10.307] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)I551.CB) [> 2.702 = 4.503 < 5.854] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)H233.CB) [> 4.693 = 7.822 < 10.169] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)S492.CB) [> 2.584 = 4.306 < 5.598] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)T130.CB) [> 4.298 = 7.163 < 9.312] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)I551.CB) [> 3.576 = 5.960 < 7.748] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N105.CB, (T0547)P128.CB) [> 3.481 = 5.802 < 7.543] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y104.CB, (T0547)A127.CB) [> 3.797 = 6.329 < 8.227] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)P426.CB) [> 3.840 = 6.400 < 8.320] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)K414.CB) [> 3.430 = 5.717 < 7.432] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)A536.CB) [> 4.608 = 7.680 < 9.984] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D501.CB, (T0547)G512.CA) [> 3.295 = 5.492 < 7.139] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D501.CB, (T0547)F510.CB) [> 3.204 = 5.340 < 6.942] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)L511.CB) [> 3.489 = 5.815 < 7.559] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)F510.CB) [> 4.284 = 7.140 < 9.282] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)Y509.CB) [> 3.947 = 6.577 < 8.551] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)I537.CB) [> 2.251 = 3.752 < 4.878] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)A536.CB) [> 4.194 = 6.991 < 9.088] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)F498.CB) [> 4.640 = 7.734 < 10.054] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)P496.CB) [> 4.161 = 6.934 < 9.014] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)K495.CB) [> 4.098 = 6.829 < 8.878] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)I537.CB) [> 3.784 = 6.306 < 8.198] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)L511.CB) [> 3.529 = 5.882 < 7.647] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)Y509.CB) [> 4.751 = 7.918 < 10.294] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)F498.CB) [> 3.645 = 6.075 < 7.897] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)L497.CB) [> 4.328 = 7.213 < 9.378] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)S539.CB) [> 3.419 = 5.698 < 7.408] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)L499.CB) [> 3.489 = 5.816 < 7.560] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)G512.CA) [> 3.640 = 6.067 < 7.887] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)L511.CB) [> 4.029 = 6.715 < 8.729] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)H527.CB) [> 3.985 = 6.641 < 8.633] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)G512.CA) [> 3.374 = 5.623 < 7.309] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)L511.CB) [> 3.017 = 5.028 < 6.536] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)S539.CB) [> 4.541 = 7.569 < 9.839] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P496.CB, (T0547)H527.CB) [> 4.227 = 7.045 < 9.158] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)F530.CB) [> 4.061 = 6.769 < 8.799] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)L511.CB) [> 4.397 = 7.329 < 9.527] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)F498.CB) [> 3.203 = 5.339 < 6.941] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)L497.CB) [> 4.794 = 7.990 < 10.387] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)P496.CB) [> 3.769 = 6.282 < 8.166] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)A476.CB) [> 4.286 = 7.144 < 9.287] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)T409.CB) [> 4.753 = 7.922 < 10.298] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)I489.CB) [> 3.518 = 5.863 < 7.622] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)K493.CB) [> 3.107 = 5.178 < 6.731] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)S492.CB) [> 4.701 = 7.834 < 10.185] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)K493.CB) [> 4.552 = 7.587 < 9.863] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)A536.CB) [> 4.201 = 7.002 < 9.103] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)H532.CB) [> 4.483 = 7.472 < 9.713] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)L430.CB) [> 2.521 = 4.202 < 5.463] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)D428.CB) [> 3.664 = 6.107 < 7.939] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L600.CB) [> 4.417 = 7.362 < 9.570] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L600.CB) [> 3.750 = 6.249 < 8.124] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)Y597.CB) [> 3.513 = 5.855 < 7.612] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)F599.CB) [> 4.593 = 7.655 < 9.952] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)L529.CB) [> 4.014 = 6.690 < 8.697] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)H532.CB) [> 3.345 = 5.574 < 7.247] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)T531.CB) [> 4.502 = 7.503 < 9.754] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)F530.CB) [> 3.555 = 5.924 < 7.702] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)H532.CB) [> 4.697 = 7.829 < 10.177] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L362.CB) [> 4.104 = 6.840 < 8.892] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)I538.CB) [> 4.017 = 6.696 < 8.704] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)F510.CB) [> 4.395 = 7.324 < 9.522] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)L411.CB) [> 4.551 = 7.585 < 9.860] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)I412.CB) [> 3.388 = 5.646 < 7.340] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)H532.CB) [> 3.922 = 6.537 < 8.498] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)T531.CB) [> 4.551 = 7.585 < 9.861] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)Y104.CB) [> 4.099 = 6.832 < 8.882] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)Y104.CB) [> 2.477 = 4.129 < 5.368] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)Y104.CB) [> 2.835 = 4.726 < 6.143] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)A276.CB) [> 4.109 = 6.848 < 8.902] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)I254.CB) [> 4.552 = 7.587 < 9.864] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)W194.CB) [> 2.529 = 4.215 < 5.480] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)V325.CB) [> 4.063 = 6.771 < 8.802] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)Y509.CB) [> 3.759 = 6.265 < 8.145] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)N508.CB) [> 3.355 = 5.592 < 7.270] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)Y509.CB) [> 3.487 = 5.812 < 7.555] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)E507.CB) [> 4.197 = 6.994 < 9.093] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)F498.CB) [> 4.153 = 6.922 < 8.999] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)L499.CB) [> 3.729 = 6.215 < 8.080] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)S539.CB) [> 3.005 = 5.008 < 6.510] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)S539.CB) [> 3.734 = 6.223 < 8.090] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)I538.CB) [> 2.838 = 4.730 < 6.149] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)F510.CB) [> 3.298 = 5.497 < 7.147] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)L529.CB) [> 2.962 = 4.937 < 6.418] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)N528.CB) [> 4.268 = 7.113 < 9.246] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)G512.CA) [> 4.066 = 6.777 < 8.810] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)G512.CA) [> 4.028 = 6.714 < 8.728] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)L511.CB) [> 3.879 = 6.465 < 8.405] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)F510.CB) [> 4.418 = 7.363 < 9.572] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)Y509.CB) [> 2.452 = 4.087 < 5.313] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)F510.CB) [> 3.378 = 5.629 < 7.318] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)Y509.CB) [> 4.242 = 7.070 < 9.191] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)F530.CB) [> 4.069 = 6.782 < 8.816] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)G512.CA) [> 3.904 = 6.507 < 8.459] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)L511.CB) [> 2.822 = 4.703 < 6.113] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)F510.CB) [> 4.106 = 6.844 < 8.897] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)F498.CB) [> 4.790 = 7.984 < 10.379] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)G512.CA) [> 2.882 = 4.803 < 6.244] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L511.CB) [> 4.008 = 6.681 < 8.685] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)V87.CB) [> 4.515 = 7.525 < 9.782] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)V442.CB) [> 3.802 = 6.336 < 8.237] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)L441.CB) [> 2.471 = 4.118 < 5.354] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)K357.CB) [> 4.307 = 7.179 < 9.332] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)A330.CB) [> 4.469 = 7.449 < 9.683] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)L441.CB) [> 4.753 = 7.922 < 10.298] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)L441.CB) [> 3.719 = 6.198 < 8.058] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)L441.CB) [> 2.341 = 3.901 < 5.072] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V397.CB, (T0547)H532.CB) [> 3.988 = 6.647 < 8.641] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V397.CB, (T0547)T531.CB) [> 4.625 = 7.709 < 10.022] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)D428.CB) [> 3.776 = 6.294 < 8.182] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)H532.CB) [> 4.442 = 7.404 < 9.625] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)D428.CB) [> 3.873 = 6.455 < 8.391] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)F530.CB) [> 4.548 = 7.580 < 9.854] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)D428.CB) [> 4.328 = 7.213 < 9.376] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L560.CB) [> 4.764 = 7.940 < 10.322] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)F318.CB) [> 4.721 = 7.869 < 10.230] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)T531.CB) [> 3.396 = 5.660 < 7.358] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)S539.CB) [> 4.738 = 7.897 < 10.266] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)I538.CB) [> 3.781 = 6.302 < 8.193] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)I537.CB) [> 4.241 = 7.068 < 9.188] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)A536.CB) [> 3.341 = 5.568 < 7.239] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)S539.CB) [> 3.496 = 5.827 < 7.575] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)I538.CB) [> 2.517 = 4.196 < 5.454] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)Y597.CB) [> 3.395 = 5.658 < 7.355] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D566.CB, (T0547)F599.CB) [> 4.676 = 7.793 < 10.131] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y565.CB, (T0547)F599.CB) [> 3.734 = 6.224 < 8.091] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)L600.CB) [> 4.160 = 6.934 < 9.014] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)A476.CB) [> 3.877 = 6.461 < 8.400] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)S475.CB) [> 2.974 = 4.956 < 6.443] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)A476.CB) [> 3.607 = 6.011 < 7.814] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)R474.CB) [> 3.413 = 5.689 < 7.396] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)A476.CB) [> 4.250 = 7.083 < 9.209] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)R474.CB) [> 4.057 = 6.762 < 8.790] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)A476.CB) [> 3.030 = 5.050 < 6.565] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)I302.CB) [> 2.324 = 3.873 < 5.035] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)I302.CB) [> 3.829 = 6.382 < 8.297] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I319.CB) [> 4.797 = 7.995 < 10.393] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)L600.CB) [> 3.699 = 6.165 < 8.015] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)I269.CB) [> 4.156 = 6.927 < 9.005] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)L206.CB) [> 3.516 = 5.860 < 7.618] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)S202.CB) [> 4.664 = 7.773 < 10.105] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)S202.CB) [> 4.551 = 7.585 < 9.861] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)Y366.CB) [> 4.144 = 6.906 < 8.978] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)L362.CB) [> 4.145 = 6.908 < 8.981] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)S202.CB) [> 4.124 = 6.873 < 8.935] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)D480.CB) [> 4.635 = 7.725 < 10.043] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L456.CB) [> 4.684 = 7.806 < 10.148] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)N289.CB) [> 4.481 = 7.468 < 9.708] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)L560.CB) [> 4.587 = 7.644 < 9.938] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)D484.CB) [> 2.833 = 4.722 < 6.139] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)I481.CB) [> 2.674 = 4.457 < 5.795] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)F513.CB) [> 2.702 = 4.503 < 5.854] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)G512.CA) [> 4.420 = 7.367 < 9.577] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L430.CB) [> 4.768 = 7.947 < 10.331] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)F513.CB) [> 3.691 = 6.152 < 7.998] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)G512.CA) [> 2.684 = 4.474 < 5.816] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)D480.CB) [> 2.695 = 4.491 < 5.839] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)R474.CB) [> 3.358 = 5.596 < 7.275] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I462.CB) [> 4.700 = 7.833 < 10.183] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)N459.CB) [> 4.613 = 7.688 < 9.994] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)G421.CA) [> 3.591 = 5.985 < 7.780] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)D484.CB) [> 3.584 = 5.974 < 7.766] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)L515.CB) [> 4.179 = 6.964 < 9.054] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)D480.CB) [> 3.373 = 5.622 < 7.309] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)L430.CB) [> 4.281 = 7.136 < 9.277] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L515.CB) [> 3.336 = 5.560 < 7.228] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)F514.CB) [> 4.665 = 7.774 < 10.107] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)F318.CB) [> 4.332 = 7.220 < 9.386] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L271.CB) [> 3.984 = 6.640 < 8.632] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I269.CB) [> 4.641 = 7.735 < 10.055] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)F318.CB) [> 4.669 = 7.781 < 10.116] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)H231.CB) [> 4.639 = 7.732 < 10.052] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L271.CB) [> 4.495 = 7.491 < 9.739] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)L271.CB) [> 4.348 = 7.247 < 9.421] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)L271.CB) [> 3.990 = 6.650 < 8.645] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I269.CB) [> 4.674 = 7.790 < 10.127] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)T482.CB) [> 4.571 = 7.618 < 9.904] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)D480.CB) [> 4.105 = 6.842 < 8.894] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)V442.CB) [> 3.717 = 6.196 < 8.054] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)R474.CB) [> 4.667 = 7.779 < 10.113] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)D480.CB) [> 4.145 = 6.908 < 8.981] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)A476.CB) [> 4.202 = 7.003 < 9.104] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)I538.CB) [> 3.733 = 6.222 < 8.089] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I550.CB) [> 3.801 = 6.335 < 8.235] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)G549.CA) [> 4.407 = 7.345 < 9.549] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)V547.CB) [> 3.246 = 5.409 < 7.032] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)V547.CB) [> 3.508 = 5.847 < 7.601] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)E546.CB) [> 3.867 = 6.444 < 8.378] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)Y545.CB) [> 3.086 = 5.143 < 6.686] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)G544.CA) [> 4.216 = 7.026 < 9.134] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)I551.CB) [> 3.710 = 6.184 < 8.039] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)G549.CA) [> 2.666 = 4.443 < 5.776] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)V547.CB) [> 4.005 = 6.675 < 8.678] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I551.CB) [> 4.574 = 7.624 < 9.911] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)D469.CB) [> 3.408 = 5.680 < 7.383] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)L468.CB) [> 4.288 = 7.146 < 9.290] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)R467.CB) [> 3.310 = 5.517 < 7.172] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)L468.CB) [> 3.711 = 6.184 < 8.039] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)R467.CB) [> 3.397 = 5.662 < 7.361] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)F513.CB) [> 4.483 = 7.471 < 9.712] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)H410.CB) [> 4.605 = 7.675 < 9.977] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)T409.CB) [> 3.548 = 5.914 < 7.688] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)I407.CB) [> 3.943 = 6.572 < 8.544] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)D428.CB) [> 4.309 = 7.182 < 9.336] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)P426.CB) [> 4.500 = 7.500 < 9.750] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)G421.CA) [> 4.437 = 7.395 < 9.614] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)I407.CB) [> 3.122 = 5.204 < 6.765] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)D428.CB) [> 2.609 = 4.348 < 5.652] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)K414.CB) [> 4.559 = 7.598 < 9.877] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I319.CB) [> 3.773 = 6.289 < 8.176] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)E320.CB) [> 4.688 = 7.813 < 10.158] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)D428.CB) [> 4.646 = 7.743 < 10.066] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)D428.CB) [> 3.891 = 6.485 < 8.430] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L248.CB) [> 4.461 = 7.435 < 9.666] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)L244.CB) [> 3.346 = 5.576 < 7.249] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)L244.CB) [> 2.325 = 3.876 < 5.038] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L248.CB) [> 3.397 = 5.661 < 7.359] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)R173.CB) [> 4.240 = 7.067 < 9.187] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)R173.CB) [> 3.984 = 6.641 < 8.633] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)L523.CB) [> 3.781 = 6.301 < 8.192] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)H500.CB) [> 3.442 = 5.737 < 7.459] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)T482.CB) [> 3.956 = 6.593 < 8.571] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E406.CB, (T0547)L497.CB) [> 3.514 = 5.857 < 7.615] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A405.CB, (T0547)L497.CB) [> 3.643 = 6.072 < 7.894] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)H500.CB) [> 4.229 = 7.049 < 9.163] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)V502.CB) [> 3.575 = 5.958 < 7.745] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)V516.CB) [> 4.246 = 7.077 < 9.200] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)V516.CB) [> 3.717 = 6.195 < 8.053] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)T559.CB) [> 4.088 = 6.814 < 8.858] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)I556.CB) [> 2.648 = 4.414 < 5.738] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)S555.CB) [> 4.748 = 7.913 < 10.287] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)T559.CB) [> 2.661 = 4.435 < 5.765] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)I556.CB) [> 2.398 = 3.997 < 5.196] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)L497.CB) [> 3.126 = 5.210 < 6.772] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)H500.CB) [> 4.266 = 7.110 < 9.242] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)T559.CB) [> 4.669 = 7.781 < 10.116] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)Q554.CB) [> 2.785 = 4.642 < 6.034] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)T559.CB) [> 2.838 = 4.730 < 6.148] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)I556.CB) [> 4.546 = 7.577 < 9.851] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)V516.CB) [> 3.157 = 5.262 < 6.841] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)A518.CB) [> 2.570 = 4.284 < 5.569] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)L430.CB) [> 4.281 = 7.135 < 9.275] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)Y519.CB) [> 3.462 = 5.770 < 7.500] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)A518.CB) [> 3.995 = 6.658 < 8.655] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)G517.CA) [> 4.626 = 7.710 < 10.023] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)V516.CB) [> 3.135 = 5.226 < 6.793] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)Y519.CB) [> 4.687 = 7.811 < 10.154] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)V502.CB) [> 3.484 = 5.806 < 7.548] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)L430.CB) [> 4.758 = 7.929 < 10.308] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)D480.CB) [> 3.546 = 5.910 < 7.683] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)I481.CB) [> 3.349 = 5.582 < 7.256] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)W479.CB) [> 3.079 = 5.132 < 6.672] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)W479.CB) [> 4.598 = 7.663 < 9.962] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)I538.CB) [> 4.304 = 7.173 < 9.324] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)Y519.CB) [> 4.496 = 7.494 < 9.742] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)A518.CB) [> 2.758 = 4.597 < 5.976] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)I481.CB) [> 3.565 = 5.942 < 7.724] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K17.CB, (T0547)Y122.CB) [> 4.084 = 6.806 < 8.848] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)K95.CB) [> 3.925 = 6.541 < 8.504] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)G92.CA) [> 4.746 = 7.910 < 10.283] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)P29.CB) [> 3.552 = 5.919 < 7.695] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)K27.CB) [> 4.184 = 6.973 < 9.065] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I15.CB, (T0547)A30.CB) [> 2.933 = 4.888 < 6.354] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E26.CB, (T0547)L557.CB) [> 3.618 = 6.029 < 7.838] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)I481.CB) [> 4.340 = 7.233 < 9.403] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)H53.CB) [> 4.338 = 7.231 < 9.400] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)I412.CB) [> 4.647 = 7.745 < 10.068] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)I407.CB) [> 4.768 = 7.946 < 10.330] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)F513.CB) [> 3.318 = 5.529 < 7.188] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)D480.CB) [> 4.539 = 7.565 < 9.834] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)F444.CB) [> 4.483 = 7.472 < 9.714] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)A536.CB) [> 4.580 = 7.633 < 9.923] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)D428.CB) [> 4.788 = 7.980 < 10.374] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A405.CB, (T0547)F444.CB) [> 4.110 = 6.850 < 8.905] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)E546.CB) [> 2.882 = 4.803 < 6.243] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)V547.CB) [> 2.470 = 4.117 < 5.352] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)E546.CB) [> 4.205 = 7.008 < 9.111] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)G42.CA) [> 3.167 = 5.278 < 6.861] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)E546.CB) [> 3.877 = 6.462 < 8.400] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)I570.CB) [> 2.679 = 4.465 < 5.805] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)I570.CB) [> 3.218 = 5.364 < 6.973] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)Y545.CB) [> 2.552 = 4.253 < 5.529] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)L515.CB) [> 3.753 = 6.255 < 8.131] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)F513.CB) [> 4.401 = 7.336 < 9.536] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)I407.CB) [> 4.768 = 7.947 < 10.332] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)V442.CB) [> 3.285 = 5.475 < 7.117] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)I538.CB) [> 4.321 = 7.202 < 9.362] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)F444.CB) [> 3.771 = 6.286 < 8.172] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)N443.CB) [> 2.748 = 4.580 < 5.954] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)V442.CB) [> 3.374 = 5.623 < 7.309] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)L441.CB) [> 2.504 = 4.174 < 5.426] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)F444.CB) [> 3.155 = 5.259 < 6.836] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)N443.CB) [> 4.514 = 7.523 < 9.779] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I550.CB, (T0547)I570.CB) [> 3.895 = 6.491 < 8.438] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)V442.CB) [> 3.568 = 5.947 < 7.732] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)I538.CB) [> 3.880 = 6.467 < 8.407] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)S539.CB) [> 4.681 = 7.802 < 10.143] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)I538.CB) [> 2.868 = 4.780 < 6.214] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)P426.CB) [> 4.035 = 6.724 < 8.742] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)D486.CB) [> 4.079 = 6.798 < 8.838] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)A214.CB) [> 4.459 = 7.432 < 9.661] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L430.CB) [> 4.227 = 7.044 < 9.158] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)I537.CB) [> 3.962 = 6.604 < 8.585] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E488.CB, (T0547)T531.CB) [> 3.932 = 6.554 < 8.520] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K495.CB, (T0547)D562.CB) [> 3.154 = 5.256 < 6.833] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P496.CB, (T0547)I538.CB) [> 4.700 = 7.833 < 10.182] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)I537.CB) [> 3.646 = 6.077 < 7.900] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)L49.CB) [> 3.463 = 5.772 < 7.503] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)H410.CB) [> 4.265 = 7.108 < 9.240] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N18.CB, (T0547)A374.CB) [> 4.593 = 7.655 < 9.952] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I15.CB, (T0547)N24.CB) [> 4.734 = 7.890 < 10.257] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)N24.CB) [> 3.535 = 5.891 < 7.659] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)V584.CB) [> 1.654 = 2.756 < 3.583] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)N575.CB) [> 4.767 = 7.944 < 10.327] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)L574.CB) [> 1.928 = 3.213 < 4.177] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)I573.CB) [> 4.645 = 7.742 < 10.065] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)M571.CB) [> 4.748 = 7.913 < 10.287] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)I570.CB) [> 1.889 = 3.148 < 4.093] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)A569.CB) [> 4.607 = 7.678 < 9.981] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)L515.CB) [> 2.971 = 4.951 < 6.437] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)F514.CB) [> 4.362 = 7.271 < 9.452] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)L574.CB) [> 4.147 = 6.911 < 8.984] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)I570.CB) [> 4.142 = 6.903 < 8.974] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)F513.CB) [> 3.435 = 5.725 < 7.442] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)I573.CB) [> 3.161 = 5.269 < 6.850] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)R577.CB) [> 3.164 = 5.273 < 6.854] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)I578.CB) [> 3.451 = 5.752 < 7.477] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)S581.CB) [> 4.665 = 7.775 < 10.108] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)I592.CB) [> 3.451 = 5.752 < 7.477] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)S581.CB) [> 4.574 = 7.623 < 9.910] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)A476.CB) [> 2.191 = 3.651 < 4.746] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)I34.CB) [> 4.784 = 7.974 < 10.366] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)M571.CB) [> 4.214 = 7.024 < 9.131] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)F514.CB) [> 3.365 = 5.608 < 7.291] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L511.CB) [> 4.404 = 7.340 < 9.541] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)L511.CB) [> 3.199 = 5.331 < 6.931] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)A476.CB) [> 4.767 = 7.945 < 10.328] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)A476.CB) [> 3.435 = 5.725 < 7.442] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L511.CB) [> 4.602 = 7.669 < 9.970] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)M571.CB) [> 3.321 = 5.535 < 7.195] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)L574.CB) [> 4.773 = 7.954 < 10.341] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)L574.CB) [> 3.168 = 5.280 < 6.863] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E60.CB, (T0547)R577.CB) [> 4.490 = 7.484 < 9.729] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N96.CB, (T0547)L574.CB) [> 4.273 = 7.122 < 9.259] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N96.CB, (T0547)I578.CB) [> 4.256 = 7.094 < 9.222] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)N96.CB, (T0547)I592.CB) [> 4.256 = 7.094 < 9.222] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)K99.CB, (T0547)I578.CB) [> 3.488 = 5.814 < 7.558] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L100.CB, (T0547)I578.CB) [> 3.455 = 5.759 < 7.487] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L100.CB, (T0547)I592.CB) [> 3.455 = 5.759 < 7.487] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L100.CB, (T0547)S581.CB) [> 2.820 = 4.699 < 6.109] w=0.013 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)R183.CB) [> 3.930 = 6.549 < 8.514] w=0.004 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)H231.CB) [> 2.742 = 4.569 < 5.940] w=0.004 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)N270.CB) [> 3.170 = 5.283 < 6.868] w=0.004 to align_bonus # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)L155.CB) [> 4.514 = 7.523 < 9.780] w=0.003 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)N132.CB) [> 4.345 = 7.242 < 9.414] w=0.001 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)E109.CB) [> 4.422 = 7.370 < 9.581] w=0.001 to align_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)A110.CB) [> 3.518 = 5.864 < 7.623] w=0.001 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)N270.CB) [> 4.636 = 7.727 < 10.046] w=0.001 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)N132.CB) [> 4.596 = 7.659 < 9.957] w=0.001 to align_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)T130.CB) [> 3.599 = 5.998 < 7.797] w=0.001 to align_bonus # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)L108.CB) [> 4.139 = 6.898 < 8.968] w=0.001 to align_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)V82.CB) [> 3.698 = 6.163 < 8.012] w=0.001 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)P84.CB) [> 4.365 = 7.275 < 9.457] w=0.001 to align_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)V82.CB) [> 4.752 = 7.921 < 10.297] w=0.001 to align_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G235.CA) [> 3.305 = 5.508 < 7.160] w=0.001 to align_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G235.CA) [> 4.597 = 7.662 < 9.960] w=0.001 to align_bonus # future Constraint commands -> rejected_constraints # future HelixConstraint commands -> rejected_constraints # future StrandConstraint commands -> rejected_constraints # future SheetConstraint commands -> rejected_constraints # future Hbond commands -> rejected_constraints # future SSbond commands -> rejected_constraints # reading script from file rejected.constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)Y122.CB) [> 3.116 = 5.194 < 6.752] w=0.996 to rejected_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)L100.CB) [> 2.923 = 4.872 < 6.334] w=0.920 to rejected_constraints # Constraint # added constraint: constraint((T0547)L108.CB, (T0547)N124.CB) [> 3.633 = 6.055 < 7.871] w=0.916 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)N96.CB) [> 3.337 = 5.562 < 7.231] w=0.876 to rejected_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)L97.CB) [> 4.109 = 6.848 < 8.902] w=0.799 to rejected_constraints # Constraint # added constraint: constraint((T0547)K95.CB, (T0547)Y122.CB) [> 3.385 = 5.642 < 7.334] w=0.797 to rejected_constraints # Constraint # added constraint: constraint((T0547)F227.CB, (T0547)L266.CB) [> 3.915 = 6.525 < 8.483] w=0.788 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)S403.CB) [> 3.931 = 6.551 < 8.517] w=0.784 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)V94.CB) [> 4.299 = 7.165 < 9.315] w=0.757 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)L349.CB) [> 3.865 = 6.442 < 8.375] w=0.757 to rejected_constraints # Constraint # added constraint: constraint((T0547)E60.CB, (T0547)L100.CB) [> 3.849 = 6.415 < 8.339] w=0.681 to rejected_constraints # Constraint # added constraint: constraint((T0547)V98.CB, (T0547)G107.CA) [> 4.367 = 7.279 < 9.462] w=0.679 to rejected_constraints # Constraint # added constraint: constraint((T0547)V98.CB, (T0547)L108.CB) [> 4.532 = 7.553 < 9.820] w=0.677 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)N404.CB) [> 4.005 = 6.675 < 8.678] w=0.651 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)I350.CB) [> 2.405 = 4.008 < 5.210] w=0.651 to rejected_constraints # Constraint # added constraint: constraint((T0547)P178.CB, (T0547)E225.CB) [> 3.800 = 6.333 < 8.233] w=0.614 to rejected_constraints # Constraint # added constraint: constraint((T0547)A268.CB, (T0547)I317.CB) [> 4.173 = 6.955 < 9.041] w=0.600 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)R402.CB) [> 3.491 = 5.818 < 7.564] w=0.598 to rejected_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)F227.CB) [> 4.063 = 6.772 < 8.804] w=0.587 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)Y122.CB) [> 4.179 = 6.965 < 9.055] w=0.558 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)P243.CB) [> 3.553 = 5.922 < 7.699] w=0.558 to rejected_constraints # Constraint # added constraint: constraint((T0547)I166.CB, (T0547)L224.CB) [> 4.029 = 6.715 < 8.730] w=0.548 to rejected_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)F144.CB) [> 3.742 = 6.237 < 8.109] w=0.533 to rejected_constraints # Constraint # added constraint: constraint((T0547)L155.CB, (T0547)I166.CB) [> 3.862 = 6.437 < 8.368] w=0.531 to rejected_constraints # Constraint # added constraint: constraint((T0547)I180.CB, (T0547)L224.CB) [> 3.260 = 5.433 < 7.063] w=0.507 to rejected_constraints # Constraint # added constraint: constraint((T0547)E386.CB, (T0547)G395.CA) [> 3.982 = 6.637 < 8.628] w=0.505 to rejected_constraints # Constraint # added constraint: constraint((T0547)G126.CA, (T0547)M149.CB) [> 3.662 = 6.103 < 7.934] w=0.505 to rejected_constraints # Constraint # added constraint: constraint((T0547)K177.CB, (T0547)E225.CB) [> 3.583 = 5.972 < 7.763] w=0.494 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)E386.CB) [> 3.064 = 5.107 < 6.639] w=0.491 to rejected_constraints # Constraint # added constraint: constraint((T0547)N179.CB, (T0547)E225.CB) [> 3.644 = 6.073 < 7.895] w=0.481 to rejected_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)L100.CB) [> 4.347 = 7.246 < 9.419] w=0.481 to rejected_constraints # Constraint # added constraint: constraint((T0547)L97.CB, (T0547)Y106.CB) [> 2.462 = 4.103 < 5.334] w=0.479 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)I254.CB) [> 3.851 = 6.419 < 8.344] w=0.478 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)N328.CB) [> 4.122 = 6.869 < 8.930] w=0.478 to rejected_constraints # Constraint # added constraint: constraint((T0547)V98.CB, (T0547)Y122.CB) [> 3.304 = 5.507 < 7.159] w=0.478 to rejected_constraints # Constraint # added constraint: constraint((T0547)P178.CB, (T0547)L223.CB) [> 3.910 = 6.517 < 8.472] w=0.467 to rejected_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)F227.CB) [> 3.862 = 6.437 < 8.368] w=0.467 to rejected_constraints # Constraint # added constraint: constraint((T0547)G107.CA, (T0547)N124.CB) [> 3.847 = 6.412 < 8.335] w=0.465 to rejected_constraints # Constraint # added constraint: constraint((T0547)G126.CA, (T0547)G150.CA) [> 3.691 = 6.152 < 7.998] w=0.465 to rejected_constraints # Constraint # added constraint: constraint((T0547)L160.CB, (T0547)E210.CB) [> 3.736 = 6.226 < 8.094] w=0.452 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)Y396.CB) [> 3.089 = 5.148 < 6.692] w=0.452 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)G395.CA) [> 3.230 = 5.384 < 6.999] w=0.452 to rejected_constraints # Constraint # added constraint: constraint((T0547)K95.CB, (T0547)N124.CB) [> 4.272 = 7.119 < 9.255] w=0.438 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y63.CB, (T0547)L100.CB) [> 4.200 = 6.999 < 9.099] w=0.438 to rejected_constraints # Constraint # added constraint: constraint((T0547)K95.CB, (T0547)N123.CB) [> 3.965 = 6.608 < 8.590] w=0.438 to rejected_constraints # Constraint # added constraint: constraint((T0547)L163.CB, (T0547)L224.CB) [> 4.191 = 6.985 < 9.080] w=0.428 to rejected_constraints # Constraint # added constraint: constraint((T0547)G64.CA, (T0547)G77.CA) [> 3.404 = 5.673 < 7.374] w=0.412 to rejected_constraints # Constraint # added constraint: constraint((T0547)D383.CB, (T0547)Y396.CB) [> 3.882 = 6.470 < 8.411] w=0.412 to rejected_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)E250.CB) [> 4.168 = 6.946 < 9.030] w=0.412 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y63.CB, (T0547)G101.CA) [> 3.789 = 6.315 < 8.210] w=0.398 to rejected_constraints # Constraint # added constraint: constraint((T0547)I169.CB, (T0547)P178.CB) [> 4.378 = 7.296 < 9.485] w=0.398 to rejected_constraints # Constraint # added constraint: constraint((T0547)L160.CB, (T0547)L206.CB) [> 4.382 = 7.303 < 9.494] w=0.398 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)I417.CB) [> 4.569 = 7.614 < 9.898] w=0.398 to rejected_constraints # Constraint # added constraint: constraint((T0547)K171.CB, (T0547)K222.CB) [> 4.337 = 7.229 < 9.397] w=0.398 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)L385.CB) [> 3.891 = 6.485 < 8.431] w=0.398 to rejected_constraints # Constraint # added constraint: constraint((T0547)G101.CA, (T0547)P128.CB) [> 4.547 = 7.579 < 9.853] w=0.398 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)D422.CB) [> 3.203 = 5.338 < 6.939] w=0.398 to rejected_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)H151.CB) [> 4.209 = 7.015 < 9.119] w=0.389 to rejected_constraints # Constraint # added constraint: constraint((T0547)L117.CB, (T0547)M149.CB) [> 4.003 = 6.672 < 8.674] w=0.388 to rejected_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)I142.CB) [> 3.636 = 6.059 < 7.877] w=0.388 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)K102.CB) [> 2.880 = 4.800 < 6.240] w=0.386 to rejected_constraints # Constraint # added constraint: constraint((T0547)A81.CB, (T0547)K102.CB) [> 3.168 = 5.280 < 6.864] w=0.386 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)A327.CB) [> 3.243 = 5.405 < 7.026] w=0.385 to rejected_constraints # Constraint # added constraint: constraint((T0547)L385.CB, (T0547)G395.CA) [> 3.928 = 6.547 < 8.511] w=0.385 to rejected_constraints # Constraint # added constraint: constraint((T0547)D383.CB, (T0547)D398.CB) [> 3.903 = 6.504 < 8.456] w=0.372 to rejected_constraints # Constraint # added constraint: constraint((T0547)L385.CB, (T0547)L394.CB) [> 3.058 = 5.096 < 6.625] w=0.372 to rejected_constraints # Constraint # added constraint: constraint((T0547)F232.CB, (T0547)E250.CB) [> 4.493 = 7.488 < 9.735] w=0.372 to rejected_constraints # Constraint # added constraint: constraint((T0547)I167.CB, (T0547)P178.CB) [> 4.392 = 7.320 < 9.516] w=0.363 to rejected_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)K102.CB) [> 4.094 = 6.824 < 8.871] w=0.360 to rejected_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)N96.CB) [> 4.225 = 7.042 < 9.155] w=0.359 to rejected_constraints # Constraint # added constraint: constraint((T0547)L54.CB, (T0547)A327.CB) [> 3.258 = 5.431 < 7.060] w=0.359 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)Y396.CB) [> 3.427 = 5.711 < 7.425] w=0.359 to rejected_constraints # Constraint # added constraint: constraint((T0547)E138.CB, (T0547)A165.CB) [> 3.772 = 6.287 < 8.173] w=0.359 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)G395.CA) [> 4.321 = 7.202 < 9.363] w=0.359 to rejected_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)I302.CB) [> 2.951 = 4.918 < 6.393] w=0.359 to rejected_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)K102.CB) [> 3.414 = 5.690 < 7.397] w=0.348 to rejected_constraints # Constraint # added constraint: constraint((T0547)A147.CB, (T0547)P178.CB) [> 3.630 = 6.050 < 7.865] w=0.347 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)I412.CB) [> 3.576 = 5.959 < 7.747] w=0.345 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)T413.CB) [> 3.790 = 6.317 < 8.212] w=0.345 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)I412.CB) [> 3.533 = 5.888 < 7.655] w=0.345 to rejected_constraints # Constraint # added constraint: constraint((T0547)P176.CB, (T0547)L223.CB) [> 4.219 = 7.032 < 9.141] w=0.345 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)T409.CB) [> 3.601 = 6.001 < 7.802] w=0.345 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)T409.CB) [> 3.364 = 5.607 < 7.289] w=0.345 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)K414.CB) [> 3.606 = 6.010 < 7.813] w=0.345 to rejected_constraints # Constraint # added constraint: constraint((T0547)H329.CB, (T0547)K414.CB) [> 2.654 = 4.424 < 5.751] w=0.345 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)G77.CA) [> 4.324 = 7.207 < 9.368] w=0.345 to rejected_constraints # Constraint # added constraint: constraint((T0547)S208.CB, (T0547)N253.CB) [> 3.960 = 6.601 < 8.581] w=0.345 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)A119.CB) [> 3.977 = 6.628 < 8.616] w=0.333 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y279.CB, (T0547)K367.CB) [> 3.645 = 6.075 < 7.898] w=0.332 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)L385.CB) [> 3.567 = 5.946 < 7.729] w=0.332 to rejected_constraints # Constraint # added constraint: constraint((T0547)G274.CA, (T0547)E320.CB) [> 4.613 = 7.688 < 9.995] w=0.332 to rejected_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)L155.CB) [> 3.785 = 6.308 < 8.200] w=0.332 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)E386.CB) [> 2.735 = 4.559 < 5.927] w=0.332 to rejected_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)E158.CB) [> 4.444 = 7.407 < 9.629] w=0.332 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)L408.CB) [> 3.578 = 5.963 < 7.752] w=0.332 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)K99.CB) [> 4.230 = 7.050 < 9.166] w=0.323 to rejected_constraints # Constraint # added constraint: constraint((T0547)I167.CB, (T0547)L218.CB) [> 4.426 = 7.377 < 9.590] w=0.319 to rejected_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)A327.CB) [> 4.551 = 7.585 < 9.861] w=0.319 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)N124.CB) [> 4.303 = 7.172 < 9.323] w=0.319 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)L411.CB) [> 3.382 = 5.637 < 7.328] w=0.319 to rejected_constraints # Constraint # added constraint: constraint((T0547)I212.CB, (T0547)L258.CB) [> 4.261 = 7.102 < 9.232] w=0.319 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)S387.CB) [> 4.016 = 6.693 < 8.701] w=0.319 to rejected_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)K423.CB) [> 3.483 = 5.805 < 7.547] w=0.319 to rejected_constraints # Constraint # added constraint: constraint((T0547)K219.CB, (T0547)M261.CB) [> 3.705 = 6.175 < 8.028] w=0.319 to rejected_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)A147.CB) [> 4.081 = 6.802 < 8.842] w=0.307 to rejected_constraints # Constraint # added constraint: constraint((T0547)F227.CB, (T0547)A268.CB) [> 3.447 = 5.746 < 7.470] w=0.307 to rejected_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)D398.CB) [> 3.718 = 6.197 < 8.057] w=0.305 to rejected_constraints # Constraint # added constraint: constraint((T0547)R137.CB, (T0547)I169.CB) [> 3.832 = 6.387 < 8.304] w=0.305 to rejected_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)E138.CB) [> 3.971 = 6.618 < 8.603] w=0.305 to rejected_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)A431.CB) [> 3.219 = 5.365 < 6.975] w=0.305 to rejected_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)I166.CB) [> 3.522 = 5.870 < 7.630] w=0.293 to rejected_constraints # Constraint # added constraint: constraint((T0547)F227.CB, (T0547)K264.CB) [> 3.832 = 6.387 < 8.303] w=0.292 to rejected_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)G150.CA) [> 4.259 = 7.097 < 9.227] w=0.292 to rejected_constraints # Constraint # added constraint: constraint((T0547)S208.CB, (T0547)E257.CB) [> 4.084 = 6.806 < 8.848] w=0.292 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)R402.CB) [> 3.645 = 6.075 < 7.897] w=0.292 to rejected_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)S372.CB) [> 4.317 = 7.195 < 9.353] w=0.292 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)S387.CB) [> 3.756 = 6.260 < 8.138] w=0.292 to rejected_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)N141.CB) [> 3.060 = 5.100 < 6.630] w=0.292 to rejected_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)Q400.CB) [> 4.022 = 6.704 < 8.715] w=0.292 to rejected_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)A165.CB) [> 3.890 = 6.483 < 8.428] w=0.282 to rejected_constraints # Constraint # added constraint: constraint((T0547)V98.CB, (T0547)A119.CB) [> 4.570 = 7.617 < 9.903] w=0.282 to rejected_constraints # Constraint # added constraint: constraint((T0547)I166.CB, (T0547)E225.CB) [> 3.958 = 6.596 < 8.575] w=0.280 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q226.CB, (T0547)L266.CB) [> 3.856 = 6.427 < 8.355] w=0.280 to rejected_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)Q226.CB) [> 4.011 = 6.684 < 8.690] w=0.280 to rejected_constraints # Constraint # added constraint: constraint((T0547)V98.CB, (T0547)P128.CB) [> 4.598 = 7.664 < 9.963] w=0.279 to rejected_constraints # Constraint # added constraint: constraint((T0547)A127.CB, (T0547)G150.CA) [> 3.943 = 6.572 < 8.543] w=0.279 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)I417.CB) [> 4.254 = 7.090 < 9.217] w=0.279 to rejected_constraints # Constraint # added constraint: constraint((T0547)I382.CB, (T0547)Y396.CB) [> 4.403 = 7.338 < 9.539] w=0.279 to rejected_constraints # Constraint # added constraint: constraint((T0547)A147.CB, (T0547)P176.CB) [> 3.255 = 5.426 < 7.053] w=0.279 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)S387.CB) [> 3.940 = 6.567 < 8.537] w=0.279 to rejected_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)K264.CB) [> 4.046 = 6.744 < 8.767] w=0.279 to rejected_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)R402.CB) [> 4.024 = 6.707 < 8.719] w=0.279 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)S387.CB) [> 3.990 = 6.649 < 8.644] w=0.279 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)L418.CB) [> 4.180 = 6.967 < 9.057] w=0.279 to rejected_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)D401.CB) [> 3.556 = 5.927 < 7.705] w=0.279 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)H329.CB) [> 4.489 = 7.481 < 9.726] w=0.279 to rejected_constraints # Constraint # added constraint: constraint((T0547)G143.CA, (T0547)I169.CB) [> 3.536 = 5.893 < 7.661] w=0.270 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)A247.CB) [> 3.274 = 5.457 < 7.094] w=0.268 to rejected_constraints # Constraint # added constraint: constraint((T0547)I167.CB, (T0547)E225.CB) [> 3.739 = 6.232 < 8.102] w=0.267 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)S381.CB) [> 4.012 = 6.686 < 8.692] w=0.266 to rejected_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)P176.CB) [> 3.285 = 5.475 < 7.118] w=0.266 to rejected_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)D393.CB) [> 3.102 = 5.169 < 6.720] w=0.266 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)L49.CB) [> 4.136 = 6.894 < 8.962] w=0.266 to rejected_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)T130.CB) [> 3.549 = 5.915 < 7.689] w=0.266 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)G78.CA) [> 3.160 = 5.266 < 6.846] w=0.266 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)E386.CB) [> 4.381 = 7.301 < 9.491] w=0.266 to rejected_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)A165.CB) [> 4.086 = 6.810 < 8.853] w=0.266 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)I407.CB) [> 3.127 = 5.211 < 6.774] w=0.266 to rejected_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)Q400.CB) [> 3.388 = 5.647 < 7.341] w=0.266 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)R402.CB) [> 4.341 = 7.235 < 9.405] w=0.266 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)L399.CB) [> 3.549 = 5.915 < 7.690] w=0.266 to rejected_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)I157.CB) [> 3.871 = 6.452 < 8.388] w=0.266 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)I417.CB) [> 3.708 = 6.179 < 8.033] w=0.266 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)V299.CB) [> 4.134 = 6.889 < 8.956] w=0.266 to rejected_constraints # Constraint # added constraint: constraint((T0547)I167.CB, (T0547)K222.CB) [> 4.538 = 7.564 < 9.833] w=0.256 to rejected_constraints # Constraint # added constraint: constraint((T0547)K177.CB, (T0547)K222.CB) [> 4.073 = 6.788 < 8.825] w=0.256 to rejected_constraints # Constraint # added constraint: constraint((T0547)N179.CB, (T0547)L224.CB) [> 4.609 = 7.682 < 9.986] w=0.255 to rejected_constraints # Constraint # added constraint: constraint((T0547)G235.CA, (T0547)A247.CB) [> 4.341 = 7.236 < 9.406] w=0.255 to rejected_constraints # Constraint # added constraint: constraint((T0547)L163.CB, (T0547)E225.CB) [> 4.167 = 6.944 < 9.028] w=0.254 to rejected_constraints # Constraint # added constraint: constraint((T0547)I212.CB, (T0547)I254.CB) [> 4.212 = 7.020 < 9.125] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)E285.CB) [> 3.453 = 5.755 < 7.481] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)L419.CB) [> 3.986 = 6.643 < 8.637] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)H384.CB) [> 3.525 = 5.875 < 7.637] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)M149.CB) [> 3.949 = 6.582 < 8.556] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)D40.CB, (T0547)I333.CB) [> 3.300 = 5.500 < 7.150] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)I333.CB) [> 3.697 = 6.162 < 8.011] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)E285.CB) [> 3.467 = 5.778 < 7.511] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)E278.CB, (T0547)N328.CB) [> 4.184 = 6.973 < 9.065] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)G395.CA) [> 4.188 = 6.981 < 9.075] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)H410.CB) [> 4.244 = 7.074 < 9.196] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)L418.CB) [> 4.506 = 7.510 < 9.763] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)G395.CA) [> 3.432 = 5.721 < 7.437] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)S403.CB) [> 3.573 = 5.955 < 7.742] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)N141.CB, (T0547)I166.CB) [> 3.463 = 5.771 < 7.503] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)L411.CB) [> 4.236 = 7.060 < 9.178] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)T409.CB) [> 3.977 = 6.629 < 8.617] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)E257.CB) [> 3.730 = 6.217 < 8.082] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)A416.CB) [> 3.919 = 6.531 < 8.490] w=0.252 to rejected_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)N152.CB) [> 3.764 = 6.273 < 8.155] w=0.243 to rejected_constraints # Constraint # added constraint: constraint((T0547)E164.CB, (T0547)N221.CB) [> 4.459 = 7.431 < 9.660] w=0.243 to rejected_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)I169.CB) [> 3.865 = 6.442 < 8.375] w=0.242 to rejected_constraints # Constraint # added constraint: constraint((T0547)F227.CB, (T0547)A263.CB) [> 3.846 = 6.410 < 8.333] w=0.240 to rejected_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)L399.CB) [> 4.484 = 7.473 < 9.715] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)E148.CB, (T0547)F174.CB) [> 3.865 = 6.441 < 8.373] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)G150.CA, (T0547)P176.CB) [> 4.474 = 7.457 < 9.694] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)N373.CB, (T0547)I407.CB) [> 3.804 = 6.340 < 8.242] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)L97.CB, (T0547)Y122.CB) [> 4.637 = 7.728 < 10.046] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y106.CB, (T0547)N124.CB) [> 4.339 = 7.231 < 9.401] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)F134.CB) [> 3.472 = 5.787 < 7.523] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)E60.CB, (T0547)G101.CA) [> 4.292 = 7.154 < 9.300] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)L49.CB) [> 3.612 = 6.021 < 7.827] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)D393.CB) [> 3.304 = 5.507 < 7.159] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)E278.CB, (T0547)I412.CB) [> 4.206 = 7.011 < 9.114] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)K171.CB, (T0547)L224.CB) [> 3.517 = 5.862 < 7.621] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)H329.CB, (T0547)K415.CB) [> 3.182 = 5.303 < 6.894] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)Q424.CB) [> 3.178 = 5.296 < 6.885] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)L399.CB) [> 3.796 = 6.326 < 8.224] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)K423.CB) [> 4.125 = 6.875 < 8.937] w=0.239 to rejected_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)V131.CB) [> 3.640 = 6.067 < 7.887] w=0.227 to rejected_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)Q226.CB) [> 3.894 = 6.489 < 8.436] w=0.227 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)Q424.CB) [> 4.327 = 7.212 < 9.375] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)F444.CB) [> 3.410 = 5.683 < 7.388] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)S208.CB, (T0547)A251.CB) [> 4.397 = 7.328 < 9.527] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)A296.CB) [> 4.596 = 7.660 < 9.958] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)I167.CB, (T0547)L217.CB) [> 4.118 = 6.863 < 8.922] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y63.CB, (T0547)K102.CB) [> 4.632 = 7.721 < 10.037] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)D40.CB, (T0547)P335.CB) [> 4.043 = 6.738 < 8.759] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)Y396.CB) [> 3.633 = 6.056 < 7.872] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)N425.CB) [> 4.427 = 7.378 < 9.591] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)L408.CB) [> 4.033 = 6.721 < 8.737] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)T409.CB) [> 4.338 = 7.230 < 9.398] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)N141.CB, (T0547)A165.CB) [> 3.772 = 6.287 < 8.173] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)I388.CB) [> 3.762 = 6.270 < 8.151] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)N141.CB, (T0547)L155.CB) [> 4.319 = 7.198 < 9.357] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)K286.CB) [> 3.721 = 6.202 < 8.063] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)A170.CB) [> 3.792 = 6.320 < 8.215] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)D380.CB) [> 3.811 = 6.352 < 8.257] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)D298.CB) [> 3.767 = 6.278 < 8.162] w=0.215 to rejected_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)G262.CA) [> 4.043 = 6.738 < 8.759] w=0.215 to rejected_constraints # Constraint # added constraint: constraint((T0547)A147.CB, (T0547)I169.CB) [> 3.733 = 6.222 < 8.088] w=0.214 to rejected_constraints # Constraint # added constraint: constraint((T0547)A147.CB, (T0547)A170.CB) [> 3.332 = 5.554 < 7.220] w=0.214 to rejected_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)K414.CB) [> 4.599 = 7.665 < 9.965] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)E250.CB) [> 4.000 = 6.667 < 8.667] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)L394.CB) [> 3.900 = 6.500 < 8.450] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)H410.CB) [> 3.097 = 5.162 < 6.711] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)E406.CB) [> 3.662 = 6.103 < 7.934] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)I145.CB, (T0547)P176.CB) [> 3.182 = 5.303 < 6.894] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)F174.CB) [> 3.540 = 5.900 < 7.670] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)A147.CB, (T0547)F174.CB) [> 3.527 = 5.878 < 7.641] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)L117.CB, (T0547)F144.CB) [> 4.272 = 7.119 < 9.255] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)G126.CA, (T0547)N152.CB) [> 3.870 = 6.450 < 8.384] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)Q400.CB) [> 3.415 = 5.692 < 7.400] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)G395.CA) [> 4.285 = 7.141 < 9.284] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)P128.CB) [> 3.050 = 5.083 < 6.607] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)L419.CB) [> 3.749 = 6.249 < 8.124] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)K310.CB) [> 4.196 = 6.993 < 9.091] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)G126.CA, (T0547)E148.CB) [> 3.822 = 6.371 < 8.282] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)L420.CB) [> 3.348 = 5.580 < 7.254] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)D401.CB) [> 3.483 = 5.805 < 7.547] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)Q400.CB) [> 3.376 = 5.627 < 7.316] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)R183.CB) [> 3.719 = 6.198 < 8.058] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)N141.CB, (T0547)A170.CB) [> 3.757 = 6.261 < 8.139] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)L420.CB) [> 3.930 = 6.550 < 8.515] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)D422.CB) [> 4.069 = 6.782 < 8.816] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)I333.CB) [> 3.543 = 5.904 < 7.676] w=0.212 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q226.CB, (T0547)N265.CB) [> 4.110 = 6.850 < 8.905] w=0.203 to rejected_constraints # Constraint # added constraint: constraint((T0547)I166.CB, (T0547)L223.CB) [> 4.220 = 7.033 < 9.144] w=0.202 to rejected_constraints # Constraint # added constraint: constraint((T0547)A170.CB, (T0547)E225.CB) [> 3.925 = 6.542 < 8.504] w=0.201 to rejected_constraints # Constraint # added constraint: constraint((T0547)L117.CB, (T0547)I142.CB) [> 4.310 = 7.183 < 9.338] w=0.201 to rejected_constraints # Constraint # added constraint: constraint((T0547)I145.CB, (T0547)F174.CB) [> 3.572 = 5.954 < 7.740] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)D434.CB, (T0547)N443.CB) [> 4.101 = 6.835 < 8.886] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)L399.CB) [> 3.949 = 6.582 < 8.556] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)V98.CB) [> 4.408 = 7.347 < 9.552] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)Y396.CB) [> 3.915 = 6.525 < 8.483] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)L97.CB, (T0547)N124.CB) [> 4.527 = 7.545 < 9.809] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)R293.CB) [> 4.384 = 7.307 < 9.499] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)G64.CA, (T0547)G78.CA) [> 4.356 = 7.260 < 9.438] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)S208.CB) [> 3.356 = 5.593 < 7.271] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)T207.CB) [> 4.065 = 6.774 < 8.807] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)V331.CB) [> 4.317 = 7.195 < 9.353] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)Y279.CB) [> 4.613 = 7.688 < 9.995] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)K57.CB, (T0547)A327.CB) [> 4.435 = 7.391 < 9.609] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y63.CB, (T0547)F79.CB) [> 4.445 = 7.409 < 9.631] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)G92.CA) [> 4.629 = 7.716 < 10.031] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)V98.CB, (T0547)G126.CA) [> 4.098 = 6.829 < 8.878] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)I153.CB) [> 3.289 = 5.482 < 7.127] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)Y396.CB) [> 3.426 = 5.709 < 7.422] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)A127.CB, (T0547)T154.CB) [> 3.984 = 6.639 < 8.631] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)G150.CA) [> 4.446 = 7.409 < 9.632] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)H329.CB) [> 3.805 = 6.341 < 8.244] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)N88.CB) [> 3.419 = 5.698 < 7.407] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)T130.CB) [> 3.588 = 5.980 < 7.774] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)S112.CB, (T0547)T130.CB) [> 3.983 = 6.638 < 8.629] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)R402.CB) [> 4.338 = 7.230 < 9.399] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)R402.CB) [> 4.001 = 6.669 < 8.670] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)I145.CB, (T0547)I169.CB) [> 3.683 = 6.138 < 7.979] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)I417.CB) [> 3.817 = 6.361 < 8.270] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)L418.CB) [> 4.142 = 6.904 < 8.975] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)A405.CB) [> 3.879 = 6.465 < 8.404] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)A405.CB) [> 3.939 = 6.566 < 8.535] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)S372.CB) [> 3.117 = 5.195 < 6.754] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)I142.CB) [> 4.007 = 6.678 < 8.681] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)D401.CB) [> 4.070 = 6.784 < 8.819] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)D401.CB) [> 3.715 = 6.191 < 8.048] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)S387.CB, (T0547)N425.CB) [> 4.490 = 7.484 < 9.729] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)D422.CB) [> 4.114 = 6.856 < 8.913] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)N425.CB) [> 4.117 = 6.862 < 8.921] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)H242.CB, (T0547)D298.CB) [> 4.388 = 7.313 < 9.507] w=0.199 to rejected_constraints # Constraint # added constraint: constraint((T0547)V98.CB, (T0547)A127.CB) [> 3.829 = 6.382 < 8.297] w=0.190 to rejected_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)G395.CA) [> 3.429 = 5.716 < 7.430] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)N373.CB, (T0547)E406.CB) [> 3.448 = 5.746 < 7.470] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)G395.CA) [> 4.305 = 7.175 < 9.328] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)P243.CB) [> 3.560 = 5.934 < 7.714] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)P243.CB) [> 3.892 = 6.486 < 8.432] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)T256.CB, (T0547)I306.CB) [> 4.220 = 7.034 < 9.144] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)G395.CA) [> 3.800 = 6.333 < 8.233] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)D401.CB) [> 4.126 = 6.877 < 8.940] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)K219.CB, (T0547)K264.CB) [> 4.040 = 6.734 < 8.754] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)Y255.CB) [> 4.109 = 6.849 < 8.903] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)H384.CB) [> 3.377 = 5.629 < 7.318] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)G395.CA) [> 3.895 = 6.491 < 8.439] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)Q400.CB) [> 3.805 = 6.342 < 8.245] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)F144.CB) [> 3.212 = 5.353 < 6.958] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)M149.CB) [> 3.375 = 5.625 < 7.312] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)E386.CB) [> 4.361 = 7.268 < 9.448] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)L418.CB) [> 3.945 = 6.575 < 8.547] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)S112.CB, (T0547)N141.CB) [> 4.068 = 6.780 < 8.813] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)G322.CA, (T0547)A416.CB) [> 3.798 = 6.329 < 8.228] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)A307.CB) [> 4.158 = 6.931 < 9.010] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)N249.CB, (T0547)I306.CB) [> 3.416 = 5.693 < 7.400] w=0.186 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)G77.CA) [> 3.348 = 5.581 < 7.255] w=0.177 to rejected_constraints # Constraint # added constraint: constraint((T0547)I153.CB, (T0547)P178.CB) [> 4.437 = 7.396 < 9.614] w=0.177 to rejected_constraints # Constraint # added constraint: constraint((T0547)K219.CB, (T0547)G262.CA) [> 3.834 = 6.390 < 8.307] w=0.175 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)H379.CB) [> 2.903 = 4.838 < 6.289] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)L378.CB) [> 4.012 = 6.687 < 8.694] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)Q437.CB) [> 3.878 = 6.463 < 8.402] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)K352.CB) [> 3.842 = 6.403 < 8.324] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)A431.CB) [> 4.129 = 6.881 < 8.945] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)P176.CB, (T0547)L224.CB) [> 4.163 = 6.938 < 9.019] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)L394.CB) [> 4.065 = 6.776 < 8.808] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)I238.CB) [> 3.940 = 6.567 < 8.536] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)Q400.CB) [> 3.344 = 5.573 < 7.245] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)L418.CB) [> 4.631 = 7.718 < 10.034] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)G101.CA, (T0547)N124.CB) [> 4.462 = 7.437 < 9.668] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)K310.CB) [> 4.308 = 7.181 < 9.335] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)S321.CB) [> 3.294 = 5.490 < 7.137] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)Y396.CB) [> 3.710 = 6.184 < 8.039] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)I556.CB) [> 4.088 = 6.813 < 8.857] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)M149.CB) [> 3.561 = 5.934 < 7.715] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)D136.CB, (T0547)I166.CB) [> 3.625 = 6.042 < 7.855] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)S112.CB, (T0547)F134.CB) [> 4.163 = 6.938 < 9.020] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)L385.CB, (T0547)Y396.CB) [> 3.437 = 5.728 < 7.447] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)V277.CB) [> 4.219 = 7.031 < 9.140] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)L385.CB) [> 3.633 = 6.055 < 7.871] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)D383.CB) [> 4.493 = 7.488 < 9.735] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)S387.CB) [> 3.913 = 6.521 < 8.478] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)D383.CB) [> 4.200 = 7.000 < 9.100] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)D383.CB) [> 3.735 = 6.224 < 8.092] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)H384.CB) [> 4.148 = 6.913 < 8.987] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)K348.CB) [> 3.346 = 5.576 < 7.249] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)G126.CA, (T0547)A147.CB) [> 3.871 = 6.451 < 8.386] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)L399.CB) [> 3.847 = 6.412 < 8.335] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)G395.CA) [> 4.392 = 7.320 < 9.516] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)G150.CA, (T0547)P178.CB) [> 4.019 = 6.698 < 8.708] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)S387.CB) [> 3.332 = 5.553 < 7.219] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)I388.CB, (T0547)P426.CB) [> 3.098 = 5.163 < 6.711] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)I388.CB, (T0547)Q424.CB) [> 3.811 = 6.352 < 8.258] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)E386.CB, (T0547)N425.CB) [> 3.802 = 6.337 < 8.238] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)L385.CB, (T0547)N425.CB) [> 2.963 = 4.938 < 6.420] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)L385.CB, (T0547)Q424.CB) [> 3.776 = 6.294 < 8.182] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)D383.CB, (T0547)F392.CB) [> 3.793 = 6.322 < 8.219] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)F392.CB) [> 3.327 = 5.545 < 7.209] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)T413.CB) [> 3.748 = 6.247 < 8.120] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)H410.CB) [> 3.477 = 5.795 < 7.534] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)A247.CB) [> 4.461 = 7.436 < 9.666] w=0.173 to rejected_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)T154.CB) [> 4.324 = 7.207 < 9.369] w=0.163 to rejected_constraints # Constraint # added constraint: constraint((T0547)T256.CB, (T0547)K311.CB) [> 3.649 = 6.082 < 7.907] w=0.161 to rejected_constraints # Constraint # added constraint: constraint((T0547)D136.CB, (T0547)E158.CB) [> 4.359 = 7.265 < 9.444] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)E240.CB, (T0547)K286.CB) [> 4.420 = 7.367 < 9.577] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q281.CB, (T0547)S368.CB) [> 3.967 = 6.612 < 8.595] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)L394.CB) [> 3.933 = 6.555 < 8.522] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)N541.CB) [> 2.597 = 4.329 < 5.627] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)S381.CB) [> 4.076 = 6.794 < 8.832] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)L385.CB) [> 3.444 = 5.739 < 7.461] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)H379.CB) [> 4.140 = 6.900 < 8.970] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y63.CB, (T0547)G78.CA) [> 2.725 = 4.542 < 5.905] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)G64.CA, (T0547)R293.CB) [> 4.656 = 7.760 < 10.088] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)N297.CB) [> 4.499 = 7.498 < 9.747] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)K171.CB, (T0547)N221.CB) [> 3.659 = 6.098 < 7.928] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)R259.CB, (T0547)D312.CB) [> 3.677 = 6.128 < 7.967] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)S445.CB) [> 4.532 = 7.553 < 9.819] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)E435.CB) [> 3.574 = 5.957 < 7.744] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)E438.CB) [> 4.055 = 6.759 < 8.787] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)H233.CB) [> 3.570 = 5.949 < 7.734] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)A247.CB) [> 3.883 = 6.471 < 8.413] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)L394.CB) [> 4.105 = 6.842 < 8.894] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)V397.CB) [> 4.083 = 6.804 < 8.845] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)D393.CB) [> 4.003 = 6.672 < 8.673] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)K352.CB) [> 4.654 = 7.756 < 10.083] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)I319.CB) [> 3.066 = 5.111 < 6.644] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)L271.CB) [> 4.043 = 6.739 < 8.760] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)K99.CB, (T0547)N123.CB) [> 4.518 = 7.529 < 9.788] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)G107.CA, (T0547)A119.CB) [> 4.596 = 7.659 < 9.957] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)L303.CB) [> 4.386 = 7.310 < 9.503] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)E386.CB) [> 3.763 = 6.272 < 8.153] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)D383.CB) [> 3.510 = 5.851 < 7.606] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)T390.CB) [> 3.869 = 6.448 < 8.382] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)D401.CB) [> 4.137 = 6.896 < 8.964] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)G395.CA) [> 3.578 = 5.964 < 7.753] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)D398.CB) [> 3.575 = 5.959 < 7.747] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)Q400.CB) [> 3.522 = 5.869 < 7.630] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)I382.CB, (T0547)D401.CB) [> 3.137 = 5.228 < 6.796] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)L430.CB) [> 4.136 = 6.893 < 8.961] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)S445.CB) [> 4.009 = 6.681 < 8.685] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)K57.CB, (T0547)L100.CB) [> 4.560 = 7.600 < 9.880] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)A81.CB, (T0547)L97.CB) [> 4.659 = 7.765 < 10.094] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)M120.CB, (T0547)G150.CA) [> 4.680 = 7.799 < 10.139] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)K286.CB) [> 3.374 = 5.624 < 7.311] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)S403.CB) [> 3.544 = 5.907 < 7.679] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)D401.CB) [> 3.997 = 6.662 < 8.660] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)T413.CB) [> 3.938 = 6.562 < 8.531] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)D398.CB) [> 4.195 = 6.991 < 9.088] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)I153.CB, (T0547)F227.CB) [> 3.766 = 6.278 < 8.161] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)I350.CB) [> 2.542 = 4.236 < 5.507] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)I350.CB) [> 4.097 = 6.828 < 8.877] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)F227.CB, (T0547)L258.CB) [> 4.200 = 6.999 < 9.099] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)I254.CB) [> 4.020 = 6.699 < 8.709] w=0.159 to rejected_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)I166.CB) [> 3.904 = 6.506 < 8.458] w=0.150 to rejected_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)K135.CB) [> 3.771 = 6.285 < 8.170] w=0.147 to rejected_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)E314.CB) [> 3.380 = 5.633 < 7.323] w=0.147 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)E542.CB) [> 4.329 = 7.215 < 9.379] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)D40.CB, (T0547)I407.CB) [> 3.501 = 5.835 < 7.586] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)I407.CB) [> 4.045 = 6.741 < 8.764] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)I407.CB) [> 3.401 = 5.669 < 7.369] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)Y545.CB) [> 3.666 = 6.110 < 7.943] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)E435.CB) [> 3.817 = 6.361 < 8.270] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)I417.CB) [> 3.295 = 5.492 < 7.140] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)T209.CB) [> 3.542 = 5.903 < 7.674] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y279.CB, (T0547)T413.CB) [> 3.365 = 5.608 < 7.290] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)H379.CB) [> 4.335 = 7.225 < 9.393] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)H384.CB) [> 4.308 = 7.179 < 9.333] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)D383.CB) [> 4.509 = 7.515 < 9.770] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)G235.CA) [> 3.371 = 5.618 < 7.303] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)Q237.CB) [> 3.139 = 5.231 < 6.800] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)A307.CB) [> 4.555 = 7.592 < 9.870] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)I333.CB) [> 3.526 = 5.877 < 7.640] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)D434.CB) [> 3.792 = 6.319 < 8.215] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)S280.CB, (T0547)S368.CB) [> 4.072 = 6.787 < 8.823] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)S381.CB) [> 3.905 = 6.508 < 8.460] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)N443.CB) [> 4.085 = 6.808 < 8.850] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)A127.CB, (T0547)E148.CB) [> 4.246 = 7.077 < 9.200] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)I412.CB) [> 4.153 = 6.922 < 8.999] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)L394.CB) [> 3.776 = 6.293 < 8.181] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)L394.CB) [> 3.524 = 5.873 < 7.635] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)G133.CA) [> 4.428 = 7.380 < 9.594] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)F174.CB) [> 4.040 = 6.733 < 8.754] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)P356.CB) [> 4.659 = 7.764 < 10.094] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)S112.CB, (T0547)K135.CB) [> 4.165 = 6.942 < 9.025] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)V325.CB) [> 4.425 = 7.375 < 9.588] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)L385.CB) [> 4.146 = 6.910 < 8.983] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)N216.CB, (T0547)A263.CB) [> 4.281 = 7.135 < 9.276] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)F444.CB) [> 4.277 = 7.128 < 9.266] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)G107.CA, (T0547)E125.CB) [> 4.489 = 7.482 < 9.727] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)K286.CB) [> 3.724 = 6.206 < 8.068] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)I382.CB, (T0547)Q400.CB) [> 4.198 = 6.996 < 9.095] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)D383.CB, (T0547)L399.CB) [> 4.300 = 7.167 < 9.317] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)L408.CB) [> 4.146 = 6.910 < 8.983] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)T409.CB) [> 4.131 = 6.885 < 8.951] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)L446.CB) [> 3.957 = 6.595 < 8.574] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)L292.CB, (T0547)S321.CB) [> 3.409 = 5.682 < 7.387] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)I212.CB, (T0547)G262.CA) [> 3.963 = 6.604 < 8.586] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)V277.CB) [> 3.810 = 6.349 < 8.254] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)L275.CB) [> 4.409 = 7.349 < 9.554] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)L385.CB, (T0547)V397.CB) [> 3.444 = 5.740 < 7.462] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)N88.CB) [> 4.535 = 7.558 < 9.825] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)H151.CB, (T0547)N179.CB) [> 4.290 = 7.149 < 9.294] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)H151.CB) [> 4.277 = 7.128 < 9.267] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)D401.CB) [> 4.285 = 7.142 < 9.284] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)G395.CA) [> 3.887 = 6.479 < 8.423] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)A416.CB) [> 4.347 = 7.245 < 9.418] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)D383.CB) [> 4.294 = 7.157 < 9.304] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)D393.CB) [> 3.338 = 5.564 < 7.233] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)H410.CB) [> 3.534 = 5.890 < 7.657] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)I350.CB) [> 4.543 = 7.571 < 9.842] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)D383.CB) [> 3.645 = 6.075 < 7.897] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)E386.CB) [> 3.881 = 6.468 < 8.408] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)I306.CB) [> 4.447 = 7.412 < 9.636] w=0.146 to rejected_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)T156.CB) [> 4.177 = 6.962 < 9.051] w=0.137 to rejected_constraints # Constraint # added constraint: constraint((T0547)N152.CB, (T0547)P178.CB) [> 3.246 = 5.409 < 7.032] w=0.137 to rejected_constraints # Constraint # added constraint: constraint((T0547)D168.CB, (T0547)L223.CB) [> 4.660 = 7.767 < 10.098] w=0.135 to rejected_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)M149.CB) [> 4.276 = 7.127 < 9.265] w=0.134 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)P315.CB) [> 4.241 = 7.069 < 9.190] w=0.134 to rejected_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)Q433.CB) [> 3.789 = 6.315 < 8.209] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)I407.CB) [> 4.013 = 6.688 < 8.694] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)E37.CB, (T0547)I407.CB) [> 3.787 = 6.311 < 8.204] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)Q433.CB) [> 3.464 = 5.773 < 7.505] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)I432.CB) [> 4.688 = 7.813 < 10.157] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)D434.CB) [> 3.240 = 5.400 < 7.020] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)E278.CB, (T0547)S287.CB) [> 3.174 = 5.290 < 6.877] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)A327.CB, (T0547)I417.CB) [> 4.571 = 7.619 < 9.905] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)A431.CB) [> 3.372 = 5.620 < 7.307] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)S381.CB) [> 3.606 = 6.010 < 7.813] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)Q400.CB) [> 3.077 = 5.128 < 6.666] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)D398.CB) [> 4.268 = 7.113 < 9.247] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)E285.CB, (T0547)Y295.CB) [> 4.283 = 7.139 < 9.280] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)K367.CB) [> 4.629 = 7.716 < 10.030] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)L399.CB) [> 4.358 = 7.264 < 9.443] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)S287.CB) [> 3.986 = 6.643 < 8.636] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)I382.CB, (T0547)R402.CB) [> 4.250 = 7.083 < 9.208] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)N541.CB) [> 3.561 = 5.934 < 7.715] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)T409.CB) [> 3.626 = 6.044 < 7.857] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)S321.CB) [> 4.629 = 7.714 < 10.029] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)D398.CB) [> 3.747 = 6.245 < 8.118] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)L394.CB) [> 3.471 = 5.785 < 7.520] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)A147.CB, (T0547)K177.CB) [> 4.074 = 6.790 < 8.827] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)D393.CB) [> 4.097 = 6.829 < 8.878] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)L303.CB) [> 4.375 = 7.292 < 9.480] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)F232.CB, (T0547)I254.CB) [> 4.327 = 7.211 < 9.374] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)K357.CB) [> 4.590 = 7.649 < 9.944] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)V300.CB) [> 4.609 = 7.682 < 9.987] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)I302.CB) [> 3.865 = 6.441 < 8.374] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)H384.CB) [> 3.545 = 5.908 < 7.681] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)E406.CB) [> 4.380 = 7.299 < 9.489] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)D401.CB) [> 3.550 = 5.917 < 7.692] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)I388.CB, (T0547)A427.CB) [> 4.213 = 7.022 < 9.128] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)L399.CB, (T0547)L408.CB) [> 4.626 = 7.710 < 10.023] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)F447.CB) [> 3.569 = 5.948 < 7.733] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)S208.CB, (T0547)L258.CB) [> 3.388 = 5.646 < 7.340] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)F232.CB, (T0547)Y255.CB) [> 3.059 = 5.098 < 6.627] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)V191.CB) [> 3.015 = 5.025 < 6.532] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)E314.CB) [> 4.028 = 6.713 < 8.727] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)I556.CB) [> 4.137 = 6.895 < 8.964] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)Y396.CB) [> 3.419 = 5.698 < 7.407] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)Y396.CB) [> 4.180 = 6.966 < 9.056] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)V397.CB) [> 3.516 = 5.861 < 7.619] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)E386.CB, (T0547)Y396.CB) [> 3.048 = 5.080 < 6.604] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)N141.CB, (T0547)P178.CB) [> 4.225 = 7.042 < 9.155] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)L385.CB) [> 3.785 = 6.309 < 8.202] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)P178.CB) [> 4.281 = 7.135 < 9.276] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)Y396.CB) [> 4.085 = 6.809 < 8.851] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)L155.CB) [> 3.194 = 5.323 < 6.920] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)R288.CB) [> 3.516 = 5.861 < 7.619] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)I417.CB) [> 4.466 = 7.444 < 9.677] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)T413.CB) [> 3.995 = 6.659 < 8.656] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)N425.CB) [> 4.531 = 7.552 < 9.818] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)A268.CB) [> 4.223 = 7.038 < 9.150] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)H410.CB) [> 4.055 = 6.759 < 8.787] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)G111.CA, (T0547)D136.CB) [> 4.610 = 7.684 < 9.989] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)Y295.CB) [> 4.424 = 7.374 < 9.586] w=0.133 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)L292.CB) [> 4.351 = 7.252 < 9.428] w=0.122 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)Y295.CB) [> 3.416 = 5.694 < 7.402] w=0.122 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)E294.CB) [> 4.051 = 6.751 < 8.777] w=0.122 to rejected_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)I166.CB) [> 4.398 = 7.330 < 9.529] w=0.122 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)K311.CB) [> 4.678 = 7.796 < 10.135] w=0.121 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)I432.CB) [> 3.845 = 6.409 < 8.332] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)I140.CB) [> 4.545 = 7.575 < 9.847] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)N141.CB) [> 4.512 = 7.520 < 9.776] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)G198.CA) [> 3.581 = 5.968 < 7.759] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)L378.CB) [> 3.950 = 6.584 < 8.559] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)A431.CB) [> 4.271 = 7.118 < 9.253] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)K423.CB) [> 4.227 = 7.045 < 9.159] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)F392.CB) [> 3.367 = 5.612 < 7.296] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)Y396.CB) [> 4.162 = 6.936 < 9.017] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)K414.CB) [> 3.934 = 6.556 < 8.523] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)I412.CB) [> 4.436 = 7.393 < 9.611] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)A427.CB) [> 3.950 = 6.583 < 8.558] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)I388.CB, (T0547)D428.CB) [> 4.298 = 7.163 < 9.312] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)F392.CB, (T0547)H410.CB) [> 3.805 = 6.342 < 8.244] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)K423.CB, (T0547)F453.CB) [> 3.531 = 5.886 < 7.651] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)Q448.CB) [> 2.000 = 3.334 < 4.334] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)N96.CB) [> 4.612 = 7.687 < 9.993] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)Y295.CB) [> 3.885 = 6.475 < 8.418] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)E294.CB) [> 3.560 = 5.933 < 7.713] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)G252.CA) [> 4.614 = 7.691 < 9.998] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y63.CB, (T0547)N80.CB) [> 4.660 = 7.767 < 10.097] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y63.CB, (T0547)Y106.CB) [> 4.263 = 7.104 < 9.236] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)A119.CB) [> 4.621 = 7.701 < 10.011] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)I238.CB) [> 3.866 = 6.443 < 8.376] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)K310.CB) [> 4.388 = 7.314 < 9.508] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)L394.CB) [> 4.046 = 6.743 < 8.766] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)F392.CB) [> 4.325 = 7.209 < 9.372] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q424.CB, (T0547)Q448.CB) [> 4.145 = 6.909 < 8.981] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)A146.CB, (T0547)F174.CB) [> 3.861 = 6.435 < 8.365] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)E548.CB) [> 3.400 = 5.666 < 7.366] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)I538.CB, (T0547)E548.CB) [> 3.707 = 6.178 < 8.032] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)K370.CB) [> 4.159 = 6.931 < 9.011] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)S372.CB) [> 2.523 = 4.206 < 5.467] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)F51.CB) [> 2.863 = 4.772 < 6.203] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)P52.CB) [> 4.245 = 7.075 < 9.197] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)H53.CB) [> 3.569 = 5.948 < 7.733] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)I407.CB) [> 3.775 = 6.292 < 8.179] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)T409.CB) [> 3.686 = 6.143 < 7.986] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)G143.CA, (T0547)L155.CB) [> 4.193 = 6.988 < 9.085] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)G143.CA, (T0547)I153.CB) [> 3.363 = 5.605 < 7.286] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)I388.CB) [> 3.951 = 6.585 < 8.561] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)L275.CB) [> 3.447 = 5.746 < 7.469] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)L420.CB) [> 3.790 = 6.317 < 8.212] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)L163.CB, (T0547)E220.CB) [> 4.053 = 6.755 < 8.782] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)I167.CB, (T0547)E220.CB) [> 3.800 = 6.334 < 8.234] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)E278.CB) [> 4.177 = 6.961 < 9.050] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)A170.CB, (T0547)N221.CB) [> 4.601 = 7.669 < 9.969] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)S387.CB) [> 4.279 = 7.131 < 9.271] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)D312.CB) [> 4.532 = 7.554 < 9.820] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)D383.CB, (T0547)G395.CA) [> 4.168 = 6.946 < 9.030] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)L408.CB) [> 4.069 = 6.782 < 8.816] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)E37.CB, (T0547)L408.CB) [> 3.787 = 6.312 < 8.205] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)D40.CB, (T0547)L408.CB) [> 3.386 = 5.643 < 7.335] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)L275.CB) [> 4.420 = 7.366 < 9.576] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)G64.CA, (T0547)L292.CB) [> 4.581 = 7.635 < 9.925] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)V94.CB, (T0547)A121.CB) [> 4.644 = 7.740 < 10.062] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)I306.CB, (T0547)P315.CB) [> 3.657 = 6.094 < 7.922] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)F392.CB) [> 4.128 = 6.880 < 8.944] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)A127.CB) [> 4.542 = 7.570 < 9.841] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)T413.CB) [> 3.280 = 5.466 < 7.106] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)L411.CB) [> 2.999 = 4.998 < 6.498] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)I412.CB) [> 3.910 = 6.516 < 8.471] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)T413.CB) [> 2.848 = 4.746 < 6.170] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)H410.CB) [> 4.124 = 6.874 < 8.936] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)L411.CB) [> 2.250 = 3.750 < 4.875] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)F318.CB) [> 4.043 = 6.738 < 8.759] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)D398.CB) [> 4.282 = 7.137 < 9.278] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)V397.CB) [> 3.015 = 5.024 < 6.532] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)V397.CB) [> 4.047 = 6.745 < 8.768] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)L337.CB) [> 4.538 = 7.563 < 9.832] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)I153.CB) [> 4.270 = 7.117 < 9.252] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)R259.CB, (T0547)K311.CB) [> 3.826 = 6.376 < 8.289] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)I319.CB) [> 3.890 = 6.483 < 8.428] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)L385.CB) [> 2.861 = 4.768 < 6.198] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)H384.CB) [> 4.163 = 6.939 < 9.020] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)L385.CB) [> 4.458 = 7.430 < 9.659] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)G143.CA, (T0547)P178.CB) [> 4.330 = 7.217 < 9.382] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)E278.CB, (T0547)T413.CB) [> 4.064 = 6.773 < 8.804] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)E386.CB) [> 4.588 = 7.646 < 9.940] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)D401.CB) [> 3.843 = 6.404 < 8.326] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)R288.CB) [> 3.930 = 6.549 < 8.514] w=0.120 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)A327.CB) [> 4.509 = 7.516 < 9.770] w=0.119 to rejected_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)I254.CB) [> 4.582 = 7.637 < 9.929] w=0.119 to rejected_constraints # Constraint # added constraint: constraint((T0547)T156.CB, (T0547)G205.CA) [> 4.677 = 7.795 < 10.134] w=0.110 to rejected_constraints # Constraint # added constraint: constraint((T0547)A147.CB, (T0547)I166.CB) [> 4.434 = 7.390 < 9.607] w=0.108 to rejected_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)A147.CB) [> 4.522 = 7.536 < 9.797] w=0.108 to rejected_constraints # Constraint # added constraint: constraint((T0547)E435.CB, (T0547)F444.CB) [> 3.199 = 5.331 < 6.930] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)S445.CB) [> 2.711 = 4.518 < 5.874] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)I432.CB, (T0547)L446.CB) [> 3.887 = 6.478 < 8.422] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)S445.CB) [> 4.612 = 7.687 < 9.993] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)G395.CA, (T0547)L411.CB) [> 4.391 = 7.318 < 9.513] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)G395.CA, (T0547)H410.CB) [> 4.389 = 7.315 < 9.510] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)I382.CB, (T0547)S403.CB) [> 4.174 = 6.957 < 9.045] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)D401.CB) [> 4.043 = 6.739 < 8.761] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)S403.CB) [> 3.752 = 6.253 < 8.129] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)V547.CB, (T0547)K582.CB) [> 3.978 = 6.630 < 8.619] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)G549.CA, (T0547)K582.CB) [> 2.862 = 4.770 < 6.200] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)G549.CA, (T0547)L583.CB) [> 4.674 = 7.789 < 10.126] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L292.CB, (T0547)G322.CA) [> 3.141 = 5.235 < 6.805] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L292.CB, (T0547)R323.CB) [> 2.709 = 4.515 < 5.869] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)S321.CB) [> 3.323 = 5.538 < 7.200] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)K102.CB, (T0547)S321.CB) [> 4.479 = 7.464 < 9.704] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)L271.CB) [> 3.812 = 6.353 < 8.259] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L211.CB, (T0547)M261.CB) [> 3.875 = 6.458 < 8.396] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)E548.CB) [> 3.640 = 6.067 < 7.887] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)V547.CB) [> 4.047 = 6.744 < 8.768] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)V131.CB) [> 4.181 = 6.969 < 9.059] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)G395.CA) [> 4.449 = 7.416 < 9.640] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)I145.CB, (T0547)I166.CB) [> 4.428 = 7.380 < 9.594] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)S539.CB, (T0547)E548.CB) [> 2.839 = 4.732 < 6.152] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)L139.CB) [> 4.313 = 7.189 < 9.346] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)K28.CB, (T0547)E37.CB) [> 3.554 = 5.924 < 7.701] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)K28.CB, (T0547)S372.CB) [> 4.109 = 6.848 < 8.902] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)K28.CB, (T0547)N373.CB) [> 3.898 = 6.496 < 8.445] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)E37.CB, (T0547)N373.CB) [> 3.951 = 6.585 < 8.561] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)L583.CB) [> 3.819 = 6.366 < 8.275] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)I432.CB) [> 4.257 = 7.095 < 9.224] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)D434.CB) [> 3.876 = 6.460 < 8.397] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)D434.CB) [> 4.023 = 6.705 < 8.717] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)K415.CB) [> 4.605 = 7.675 < 9.978] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)I417.CB) [> 4.553 = 7.588 < 9.864] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)Q433.CB) [> 3.906 = 6.509 < 8.462] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)A195.CB, (T0547)P243.CB) [> 2.869 = 4.782 < 6.217] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)E240.CB, (T0547)R288.CB) [> 4.405 = 7.342 < 9.545] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)I382.CB) [> 4.277 = 7.128 < 9.266] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)F392.CB) [> 4.035 = 6.724 < 8.742] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)L391.CB) [> 3.762 = 6.269 < 8.150] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)G395.CA) [> 2.575 = 4.291 < 5.579] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)Y396.CB) [> 4.119 = 6.866 < 8.925] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)L389.CB) [> 2.859 = 4.764 < 6.193] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)D393.CB) [> 3.772 = 6.287 < 8.173] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)S341.CB, (T0547)D401.CB) [> 4.402 = 7.336 < 9.537] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)E314.CB) [> 4.433 = 7.388 < 9.604] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)L391.CB) [> 4.251 = 7.086 < 9.211] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)F227.CB) [> 3.450 = 5.750 < 7.475] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)E148.CB) [> 4.494 = 7.490 < 9.737] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)I317.CB) [> 4.155 = 6.925 < 9.003] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L117.CB, (T0547)H151.CB) [> 4.432 = 7.387 < 9.604] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)I388.CB) [> 4.112 = 6.854 < 8.910] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)K286.CB) [> 4.283 = 7.139 < 9.281] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)L155.CB) [> 4.220 = 7.034 < 9.144] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)A146.CB, (T0547)P176.CB) [> 4.018 = 6.697 < 8.706] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)A268.CB, (T0547)E314.CB) [> 3.665 = 6.108 < 7.941] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L117.CB, (T0547)A146.CB) [> 4.171 = 6.952 < 9.037] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)S287.CB) [> 3.443 = 5.739 < 7.461] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)E164.CB, (T0547)E220.CB) [> 4.467 = 7.446 < 9.679] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)L54.CB) [> 4.591 = 7.652 < 9.948] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)H410.CB) [> 3.747 = 6.244 < 8.118] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)D40.CB, (T0547)S372.CB) [> 4.353 = 7.255 < 9.432] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)L429.CB) [> 4.151 = 6.918 < 8.993] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)G199.CA) [> 3.217 = 5.362 < 6.970] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L266.CB, (T0547)D312.CB) [> 4.336 = 7.226 < 9.394] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)F392.CB) [> 4.507 = 7.512 < 9.765] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)S387.CB, (T0547)A427.CB) [> 3.938 = 6.563 < 8.532] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)S445.CB) [> 4.543 = 7.572 < 9.844] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)F340.CB, (T0547)L408.CB) [> 4.370 = 7.283 < 9.468] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)S341.CB, (T0547)I407.CB) [> 4.300 = 7.167 < 9.317] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)S341.CB, (T0547)L408.CB) [> 3.326 = 5.544 < 7.207] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)I412.CB) [> 3.029 = 5.049 < 6.563] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)T413.CB) [> 3.437 = 5.728 < 7.446] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)K414.CB) [> 2.954 = 4.924 < 6.401] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)T413.CB) [> 4.057 = 6.761 < 8.789] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)E148.CB, (T0547)N179.CB) [> 4.417 = 7.362 < 9.571] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)S341.CB, (T0547)E406.CB) [> 3.986 = 6.643 < 8.636] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)S341.CB, (T0547)T409.CB) [> 4.616 = 7.694 < 10.002] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)E406.CB) [> 4.280 = 7.133 < 9.272] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)L394.CB) [> 4.416 = 7.361 < 9.569] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)E115.CB) [> 4.608 = 7.681 < 9.985] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)A263.CB) [> 3.779 = 6.298 < 8.187] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)Y396.CB) [> 4.104 = 6.840 < 8.891] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)L399.CB) [> 4.079 = 6.798 < 8.838] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)Q400.CB) [> 3.952 = 6.587 < 8.563] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)F318.CB) [> 4.037 = 6.729 < 8.748] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)R259.CB) [> 4.232 = 7.053 < 9.169] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)N265.CB) [> 4.514 = 7.523 < 9.780] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)L385.CB) [> 3.727 = 6.211 < 8.075] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)V397.CB) [> 4.627 = 7.712 < 10.026] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)M149.CB, (T0547)N179.CB) [> 4.282 = 7.136 < 9.277] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)T409.CB) [> 3.295 = 5.491 < 7.138] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)I306.CB) [> 4.292 = 7.153 < 9.299] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)L399.CB) [> 4.502 = 7.504 < 9.755] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)L441.CB) [> 4.285 = 7.142 < 9.285] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)S372.CB) [> 2.962 = 4.936 < 6.417] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)P315.CB) [> 4.561 = 7.602 < 9.882] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)L419.CB) [> 4.171 = 6.951 < 9.037] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L155.CB, (T0547)A170.CB) [> 4.372 = 7.287 < 9.473] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)E172.CB, (T0547)Q226.CB) [> 4.289 = 7.149 < 9.294] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)V325.CB) [> 4.246 = 7.076 < 9.199] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)L411.CB) [> 3.971 = 6.619 < 8.605] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)P243.CB) [> 4.384 = 7.306 < 9.498] w=0.106 to rejected_constraints # Constraint # added constraint: constraint((T0547)R137.CB, (T0547)E162.CB) [> 3.429 = 5.715 < 7.430] w=0.097 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)L271.CB) [> 4.292 = 7.153 < 9.299] w=0.097 to rejected_constraints # Constraint # added constraint: constraint((T0547)K175.CB, (T0547)L223.CB) [> 4.096 = 6.827 < 8.875] w=0.096 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)E294.CB) [> 2.451 = 4.084 < 5.310] w=0.096 to rejected_constraints # Constraint # added constraint: constraint((T0547)G143.CA, (T0547)T154.CB) [> 4.331 = 7.218 < 9.383] w=0.096 to rejected_constraints # Constraint # added constraint: constraint((T0547)R288.CB, (T0547)F318.CB) [> 3.361 = 5.602 < 7.282] w=0.094 to rejected_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)D312.CB) [> 3.953 = 6.589 < 8.566] w=0.094 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)E308.CB) [> 4.331 = 7.218 < 9.384] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)R183.CB, (T0547)G192.CA) [> 2.713 = 4.521 < 5.878] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)A307.CB) [> 4.427 = 7.379 < 9.592] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)D136.CB, (T0547)I169.CB) [> 3.890 = 6.483 < 8.428] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)F232.CB, (T0547)G252.CA) [> 4.503 = 7.505 < 9.756] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)G544.CA) [> 2.990 = 4.983 < 6.478] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)Y545.CB) [> 3.869 = 6.449 < 8.383] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)G544.CA) [> 2.891 = 4.818 < 6.264] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)V547.CB) [> 3.316 = 5.527 < 7.185] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)F318.CB) [> 3.741 = 6.235 < 8.106] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)A251.CB) [> 3.154 = 5.256 < 6.833] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)T207.CB, (T0547)L258.CB) [> 4.629 = 7.715 < 10.030] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)E294.CB) [> 4.044 = 6.739 < 8.761] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)D383.CB) [> 4.176 = 6.960 < 9.049] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)S403.CB) [> 4.055 = 6.759 < 8.786] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)E406.CB) [> 3.476 = 5.793 < 7.530] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)A405.CB) [> 3.124 = 5.206 < 6.768] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)N404.CB) [> 4.031 = 6.718 < 8.734] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)S403.CB) [> 3.640 = 6.067 < 7.887] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)E343.CB, (T0547)E406.CB) [> 3.487 = 5.811 < 7.554] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)E343.CB, (T0547)S403.CB) [> 4.294 = 7.157 < 9.304] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)S403.CB) [> 3.098 = 5.163 < 6.711] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)L408.CB) [> 4.614 = 7.690 < 9.997] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)I407.CB) [> 3.407 = 5.679 < 7.382] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)E294.CB, (T0547)L313.CB) [> 3.288 = 5.480 < 7.124] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)P315.CB) [> 4.402 = 7.337 < 9.538] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)N141.CB) [> 4.344 = 7.240 < 9.411] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)I140.CB) [> 4.403 = 7.338 < 9.539] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)Q437.CB) [> 4.327 = 7.211 < 9.374] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)V436.CB) [> 3.773 = 6.288 < 8.175] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)I432.CB) [> 3.481 = 5.802 < 7.543] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)I538.CB) [> 3.392 = 5.653 < 7.349] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)D434.CB) [> 3.338 = 5.564 < 7.233] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)I432.CB) [> 3.103 = 5.172 < 6.724] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)I538.CB) [> 3.877 = 6.462 < 8.401] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)E37.CB, (T0547)L441.CB) [> 4.421 = 7.369 < 9.579] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)K27.CB, (T0547)A374.CB) [> 2.368 = 3.947 < 5.131] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)L385.CB) [> 4.382 = 7.303 < 9.494] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)K423.CB, (T0547)Q448.CB) [> 4.256 = 7.094 < 9.222] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)R293.CB) [> 4.313 = 7.188 < 9.344] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)I432.CB, (T0547)F447.CB) [> 2.761 = 4.602 < 5.982] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)Q433.CB) [> 3.794 = 6.323 < 8.220] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)I537.CB) [> 3.907 = 6.511 < 8.464] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)S387.CB, (T0547)D428.CB) [> 3.852 = 6.420 < 8.346] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)R402.CB) [> 3.007 = 5.012 < 6.515] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)D393.CB) [> 3.877 = 6.462 < 8.400] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)D393.CB) [> 4.110 = 6.849 < 8.904] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)K414.CB) [> 4.491 = 7.485 < 9.731] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)K423.CB) [> 4.550 = 7.583 < 9.858] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)S381.CB) [> 4.383 = 7.306 < 9.497] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)N347.CB) [> 4.707 = 7.845 < 10.199] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)A431.CB) [> 4.485 = 7.476 < 9.718] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)T291.CB) [> 4.401 = 7.334 < 9.535] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)T291.CB) [> 3.999 = 6.665 < 8.665] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)E542.CB) [> 4.129 = 6.881 < 8.945] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)L411.CB) [> 4.262 = 7.103 < 9.234] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)N253.CB) [> 4.519 = 7.532 < 9.792] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)E548.CB) [> 4.286 = 7.144 < 9.287] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)A69.CB, (T0547)G78.CA) [> 3.361 = 5.601 < 7.282] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)N270.CB) [> 4.408 = 7.347 < 9.551] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q226.CB, (T0547)K264.CB) [> 4.364 = 7.273 < 9.455] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)F324.CB) [> 4.599 = 7.665 < 9.964] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)I388.CB) [> 3.546 = 5.910 < 7.683] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)Q588.CB) [> 4.083 = 6.805 < 8.846] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)D586.CB) [> 4.253 = 7.089 < 9.216] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)N585.CB) [> 3.694 = 6.157 < 8.004] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)L583.CB) [> 3.528 = 5.881 < 7.645] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)R402.CB) [> 3.938 = 6.564 < 8.533] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)L399.CB) [> 4.175 = 6.959 < 9.047] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)L420.CB) [> 4.414 = 7.357 < 9.564] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)S381.CB) [> 4.682 = 7.803 < 10.144] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)A296.CB) [> 4.478 = 7.463 < 9.702] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)L266.CB, (T0547)L313.CB) [> 4.702 = 7.837 < 10.189] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)G150.CA) [> 3.885 = 6.475 < 8.418] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)D434.CB) [> 4.470 = 7.450 < 9.685] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)D434.CB) [> 4.300 = 7.167 < 9.317] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)F444.CB) [> 4.570 = 7.616 < 9.901] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)F392.CB) [> 3.804 = 6.340 < 8.242] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y106.CB, (T0547)F318.CB) [> 4.023 = 6.705 < 8.716] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)I382.CB, (T0547)D393.CB) [> 3.388 = 5.647 < 7.341] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)D393.CB) [> 3.673 = 6.122 < 7.958] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)M120.CB, (T0547)E148.CB) [> 4.499 = 7.498 < 9.747] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)L394.CB) [> 4.176 = 6.959 < 9.047] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)P315.CB) [> 4.054 = 6.757 < 8.784] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)P315.CB) [> 4.037 = 6.729 < 8.747] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)F174.CB, (T0547)L223.CB) [> 3.499 = 5.832 < 7.582] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)I432.CB) [> 3.943 = 6.572 < 8.544] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)E548.CB) [> 3.777 = 6.294 < 8.183] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)L385.CB) [> 3.119 = 5.198 < 6.758] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)E314.CB) [> 3.201 = 5.335 < 6.935] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)N265.CB, (T0547)L313.CB) [> 4.238 = 7.063 < 9.182] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)F144.CB) [> 4.292 = 7.153 < 9.300] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)F392.CB, (T0547)L408.CB) [> 4.342 = 7.236 < 9.407] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)I319.CB) [> 3.704 = 6.174 < 8.026] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)I417.CB) [> 4.179 = 6.965 < 9.055] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)S287.CB) [> 3.458 = 5.764 < 7.493] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)Q433.CB) [> 3.501 = 5.835 < 7.586] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)D316.CB) [> 4.354 = 7.256 < 9.433] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)E314.CB) [> 4.000 = 6.667 < 8.667] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)R288.CB) [> 3.068 = 5.114 < 6.648] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)G235.CA, (T0547)L275.CB) [> 4.534 = 7.556 < 9.823] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)I382.CB, (T0547)G395.CA) [> 3.520 = 5.866 < 7.626] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)G78.CA) [> 4.514 = 7.523 < 9.780] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)T256.CB, (T0547)K310.CB) [> 2.780 = 4.633 < 6.023] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)S372.CB) [> 3.738 = 6.231 < 8.100] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)I200.CB) [> 4.339 = 7.232 < 9.402] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)E285.CB) [> 4.428 = 7.380 < 9.594] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)E406.CB) [> 4.159 = 6.932 < 9.012] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)V277.CB) [> 4.062 = 6.770 < 8.801] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)S387.CB, (T0547)P426.CB) [> 4.500 = 7.501 < 9.751] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)N425.CB) [> 4.635 = 7.725 < 10.042] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)A110.CB, (T0547)M149.CB) [> 4.562 = 7.603 < 9.883] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)A416.CB) [> 3.457 = 5.761 < 7.489] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)L420.CB) [> 4.307 = 7.178 < 9.332] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)L292.CB) [> 3.498 = 5.830 < 7.579] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)L54.CB) [> 4.404 = 7.340 < 9.543] w=0.093 to rejected_constraints # Constraint # added constraint: constraint((T0547)N179.CB, (T0547)A268.CB) [> 4.641 = 7.736 < 10.056] w=0.084 to rejected_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)Y255.CB) [> 4.482 = 7.469 < 9.710] w=0.082 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)F318.CB) [> 2.893 = 4.822 < 6.268] w=0.082 to rejected_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)K311.CB) [> 4.213 = 7.021 < 9.128] w=0.081 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)F204.CB) [> 4.368 = 7.281 < 9.465] w=0.081 to rejected_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)G111.CA) [> 4.719 = 7.865 < 10.224] w=0.081 to rejected_constraints # Constraint # added constraint: constraint((T0547)G199.CA, (T0547)G235.CA) [> 3.931 = 6.552 < 8.518] w=0.081 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)L375.CB) [> 4.316 = 7.193 < 9.350] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)G549.CA) [> 4.309 = 7.182 < 9.337] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)Y396.CB) [> 3.646 = 6.077 < 7.900] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I145.CB, (T0547)K177.CB) [> 3.916 = 6.527 < 8.486] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)G274.CA) [> 4.580 = 7.633 < 9.923] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)L394.CB) [> 3.806 = 6.343 < 8.246] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)D393.CB) [> 4.175 = 6.958 < 9.046] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L385.CB, (T0547)D398.CB) [> 2.887 = 4.812 < 6.256] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)L391.CB) [> 4.219 = 7.031 < 9.141] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)I153.CB) [> 4.411 = 7.352 < 9.557] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)Y255.CB) [> 3.089 = 5.149 < 6.694] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)G252.CA) [> 3.866 = 6.444 < 8.377] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)I254.CB) [> 4.030 = 6.717 < 8.732] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L211.CB, (T0547)R259.CB) [> 4.481 = 7.468 < 9.708] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)H151.CB) [> 4.056 = 6.760 < 8.788] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L206.CB, (T0547)I254.CB) [> 4.516 = 7.527 < 9.785] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)K310.CB) [> 3.801 = 6.334 < 8.235] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)V397.CB) [> 3.484 = 5.807 < 7.549] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)G395.CA) [> 4.506 = 7.510 < 9.763] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)D401.CB) [> 4.290 = 7.150 < 9.295] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)D393.CB) [> 4.473 = 7.455 < 9.692] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)V397.CB) [> 4.097 = 6.828 < 8.877] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)D422.CB) [> 4.413 = 7.356 < 9.563] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K283.CB, (T0547)S368.CB) [> 4.007 = 6.679 < 8.682] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)F282.CB, (T0547)Y366.CB) [> 3.462 = 5.770 < 7.501] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I212.CB, (T0547)K260.CB) [> 4.648 = 7.746 < 10.070] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)E240.CB) [> 4.006 = 6.677 < 8.680] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)E240.CB) [> 4.328 = 7.213 < 9.377] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)I432.CB) [> 4.358 = 7.263 < 9.441] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)E435.CB) [> 4.569 = 7.615 < 9.899] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)N373.CB) [> 3.668 = 6.114 < 7.948] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K27.CB, (T0547)L375.CB) [> 4.050 = 6.749 < 8.774] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)E12.CB, (T0547)L54.CB) [> 3.814 = 6.356 < 8.263] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)A127.CB, (T0547)M149.CB) [> 4.558 = 7.596 < 9.875] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)R402.CB) [> 4.240 = 7.066 < 9.186] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)V191.CB) [> 4.426 = 7.377 < 9.590] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)T413.CB) [> 3.310 = 5.517 < 7.172] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)A307.CB) [> 4.436 = 7.393 < 9.610] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)A307.CB) [> 4.222 = 7.037 < 9.148] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)E294.CB, (T0547)K310.CB) [> 3.125 = 5.209 < 6.771] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)A307.CB) [> 3.874 = 6.456 < 8.393] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)L313.CB) [> 3.600 = 6.000 < 7.800] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)K310.CB) [> 3.915 = 6.526 < 8.483] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)G544.CA) [> 4.551 = 7.584 < 9.859] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)E548.CB) [> 3.570 = 5.950 < 7.735] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)I230.CB) [> 4.558 = 7.597 < 9.876] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)L100.CB) [> 4.582 = 7.637 < 9.928] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L292.CB, (T0547)V325.CB) [> 4.513 = 7.522 < 9.778] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q424.CB, (T0547)F453.CB) [> 3.526 = 5.877 < 7.640] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)T390.CB, (T0547)Q424.CB) [> 4.566 = 7.611 < 9.894] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L163.CB, (T0547)L206.CB) [> 4.725 = 7.875 < 10.238] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I157.CB, (T0547)G205.CA) [> 4.774 = 7.957 < 10.344] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)E138.CB, (T0547)D168.CB) [> 4.694 = 7.824 < 10.171] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)D136.CB, (T0547)A146.CB) [> 4.649 = 7.748 < 10.073] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)V299.CB) [> 4.646 = 7.744 < 10.067] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K76.CB, (T0547)V300.CB) [> 3.640 = 6.067 < 7.887] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)E72.CB, (T0547)K304.CB) [> 4.254 = 7.090 < 9.217] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K68.CB, (T0547)V300.CB) [> 3.412 = 5.687 < 7.393] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L54.CB, (T0547)K414.CB) [> 4.687 = 7.812 < 10.155] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)E435.CB) [> 4.586 = 7.643 < 9.936] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)H329.CB) [> 4.736 = 7.893 < 10.261] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)E438.CB) [> 3.825 = 6.375 < 8.287] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)D434.CB) [> 3.757 = 6.262 < 8.140] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)P371.CB) [> 4.670 = 7.783 < 10.118] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)S539.CB) [> 4.265 = 7.108 < 9.240] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)L583.CB) [> 4.036 = 6.726 < 8.744] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)S387.CB, (T0547)Q424.CB) [> 4.560 = 7.601 < 9.881] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)N373.CB, (T0547)Q400.CB) [> 3.854 = 6.424 < 8.351] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)A427.CB) [> 4.551 = 7.585 < 9.860] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)H384.CB) [> 4.722 = 7.870 < 10.231] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y279.CB, (T0547)A327.CB) [> 4.752 = 7.920 < 10.296] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)R288.CB) [> 3.565 = 5.941 < 7.724] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)E285.CB) [> 4.064 = 6.773 < 8.805] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)K310.CB) [> 4.027 = 6.711 < 8.724] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)N249.CB, (T0547)N305.CB) [> 4.635 = 7.725 < 10.042] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)F301.CB) [> 4.406 = 7.343 < 9.546] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)E240.CB, (T0547)A276.CB) [> 4.655 = 7.758 < 10.085] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)K286.CB) [> 4.415 = 7.359 < 9.566] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)S197.CB, (T0547)G235.CA) [> 3.485 = 5.808 < 7.550] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K196.CB, (T0547)G235.CA) [> 3.747 = 6.245 < 8.119] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)P243.CB) [> 3.196 = 5.327 < 6.925] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)L389.CB) [> 3.681 = 6.135 < 7.976] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)L389.CB) [> 3.505 = 5.842 < 7.594] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)G395.CA) [> 4.143 = 6.905 < 8.977] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)E285.CB) [> 3.624 = 6.040 < 7.852] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)F282.CB) [> 3.914 = 6.524 < 8.481] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)F318.CB) [> 4.133 = 6.889 < 8.955] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)S287.CB) [> 4.117 = 6.862 < 8.921] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)R288.CB) [> 3.817 = 6.362 < 8.270] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)R288.CB) [> 3.987 = 6.645 < 8.639] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)I388.CB) [> 3.710 = 6.183 < 8.038] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)H384.CB) [> 3.829 = 6.381 < 8.296] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)E386.CB) [> 3.985 = 6.641 < 8.634] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)K286.CB) [> 4.041 = 6.736 < 8.756] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)H384.CB) [> 3.864 = 6.440 < 8.372] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)V94.CB, (T0547)N123.CB) [> 4.192 = 6.987 < 9.084] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y106.CB, (T0547)I317.CB) [> 4.370 = 7.284 < 9.469] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)L391.CB) [> 4.230 = 7.050 < 9.165] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)D393.CB) [> 3.465 = 5.776 < 7.509] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)D393.CB) [> 4.087 = 6.812 < 8.856] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)G395.CA) [> 3.341 = 5.568 < 7.239] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)G395.CA) [> 3.410 = 5.684 < 7.389] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K68.CB, (T0547)G78.CA) [> 4.236 = 7.061 < 9.179] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)I333.CB) [> 4.778 = 7.964 < 10.353] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)H410.CB) [> 3.979 = 6.631 < 8.620] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)Q309.CB) [> 3.585 = 5.975 < 7.767] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L218.CB, (T0547)K264.CB) [> 4.459 = 7.432 < 9.661] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)K311.CB) [> 4.024 = 6.706 < 8.718] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)L155.CB) [> 4.460 = 7.433 < 9.663] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)K102.CB) [> 4.653 = 7.755 < 10.081] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)E314.CB) [> 3.670 = 6.117 < 7.953] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)A326.CB) [> 4.615 = 7.692 < 9.999] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)E285.CB) [> 3.619 = 6.032 < 7.842] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)T390.CB) [> 3.215 = 5.358 < 6.965] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)L389.CB) [> 3.920 = 6.534 < 8.494] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)F392.CB) [> 4.049 = 6.748 < 8.772] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)T390.CB) [> 3.598 = 5.997 < 7.796] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)N152.CB, (T0547)F227.CB) [> 4.255 = 7.091 < 9.219] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I145.CB, (T0547)L155.CB) [> 4.482 = 7.471 < 9.712] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)G143.CA, (T0547)P176.CB) [> 3.670 = 6.116 < 7.951] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)Y295.CB) [> 3.678 = 6.130 < 7.969] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)N270.CB) [> 4.694 = 7.824 < 10.171] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)K311.CB) [> 3.885 = 6.475 < 8.418] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)K203.CB) [> 3.450 = 5.750 < 7.474] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)Q433.CB) [> 4.012 = 6.687 < 8.693] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)L303.CB) [> 4.609 = 7.682 < 9.987] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)N253.CB, (T0547)K310.CB) [> 4.348 = 7.247 < 9.421] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)I302.CB) [> 4.346 = 7.244 < 9.417] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)E240.CB) [> 3.729 = 6.215 < 8.079] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)I200.CB) [> 4.515 = 7.526 < 9.784] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)P128.CB) [> 4.543 = 7.572 < 9.843] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)G107.CA) [> 4.200 = 7.000 < 9.100] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)G101.CA) [> 4.520 = 7.533 < 9.793] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)G107.CA) [> 4.219 = 7.032 < 9.141] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)Y106.CB) [> 3.146 = 5.243 < 6.816] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)G101.CA) [> 3.099 = 5.166 < 6.715] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)L100.CB) [> 4.534 = 7.556 < 9.823] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)A330.CB) [> 4.622 = 7.703 < 10.014] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)V397.CB) [> 4.403 = 7.339 < 9.541] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)V397.CB) [> 4.315 = 7.191 < 9.349] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)K196.CB) [> 3.700 = 6.167 < 8.017] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)L441.CB) [> 3.526 = 5.877 < 7.640] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K27.CB, (T0547)H53.CB) [> 3.684 = 6.141 < 7.983] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K27.CB, (T0547)P52.CB) [> 4.352 = 7.254 < 9.430] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K27.CB, (T0547)F51.CB) [> 3.089 = 5.148 < 6.693] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)V21.CB, (T0547)S372.CB) [> 2.763 = 4.605 < 5.987] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)N373.CB) [> 3.755 = 6.258 < 8.136] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)G19.CA, (T0547)A374.CB) [> 3.228 = 5.380 < 6.994] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)H384.CB) [> 4.481 = 7.469 < 9.710] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q226.CB, (T0547)L258.CB) [> 4.226 = 7.044 < 9.157] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)G421.CA) [> 3.594 = 5.990 < 7.788] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)P371.CB) [> 4.075 = 6.792 < 8.830] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)G111.CA, (T0547)K135.CB) [> 4.339 = 7.231 < 9.400] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)L163.CB, (T0547)L223.CB) [> 4.028 = 6.713 < 8.726] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)I180.CB, (T0547)L223.CB) [> 3.498 = 5.829 < 7.578] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)L411.CB) [> 3.465 = 5.775 < 7.507] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)Y396.CB) [> 4.049 = 6.749 < 8.774] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)N152.CB, (T0547)E172.CB) [> 4.104 = 6.840 < 8.892] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)T291.CB) [> 3.937 = 6.561 < 8.530] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)A307.CB) [> 4.785 = 7.974 < 10.367] w=0.080 to rejected_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)I166.CB) [> 4.342 = 7.237 < 9.408] w=0.070 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)F232.CB) [> 4.607 = 7.678 < 9.981] w=0.069 to rejected_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)E294.CB) [> 3.927 = 6.545 < 8.509] w=0.069 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)Y295.CB) [> 4.203 = 7.005 < 9.107] w=0.069 to rejected_constraints # Constraint # added constraint: constraint((T0547)N249.CB, (T0547)D298.CB) [> 4.227 = 7.045 < 9.159] w=0.069 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y75.CB, (T0547)E314.CB) [> 3.267 = 5.444 < 7.078] w=0.068 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)S202.CB) [> 3.497 = 5.829 < 7.578] w=0.068 to rejected_constraints # Constraint # added constraint: constraint((T0547)D168.CB, (T0547)L224.CB) [> 4.715 = 7.859 < 10.216] w=0.068 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)N80.CB) [> 3.720 = 6.200 < 8.060] w=0.068 to rejected_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)Q448.CB) [> 3.765 = 6.276 < 8.158] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)S449.CB) [> 3.039 = 5.065 < 6.584] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)Q448.CB) [> 3.757 = 6.262 < 8.140] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)S445.CB, (T0547)I537.CB) [> 3.386 = 5.644 < 7.337] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)S445.CB, (T0547)I538.CB) [> 4.005 = 6.676 < 8.678] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)S445.CB, (T0547)S539.CB) [> 2.921 = 4.868 < 6.328] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q448.CB, (T0547)A536.CB) [> 2.686 = 4.476 < 5.819] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)S449.CB, (T0547)A536.CB) [> 3.734 = 6.224 < 8.091] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K102.CB, (T0547)A127.CB) [> 4.025 = 6.708 < 8.721] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)H233.CB, (T0547)T291.CB) [> 4.200 = 7.000 < 9.100] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)S445.CB) [> 4.301 = 7.168 < 9.319] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)L206.CB) [> 3.381 = 5.635 < 7.325] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)F144.CB) [> 4.013 = 6.689 < 8.695] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)I382.CB) [> 4.096 = 6.827 < 8.875] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)E376.CB) [> 4.041 = 6.736 < 8.756] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)E386.CB, (T0547)V397.CB) [> 3.701 = 6.168 < 8.019] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)K543.CB) [> 3.443 = 5.737 < 7.459] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)K543.CB) [> 3.793 = 6.322 < 8.218] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)K543.CB) [> 3.991 = 6.651 < 8.646] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)V547.CB) [> 3.794 = 6.324 < 8.221] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)T154.CB) [> 4.575 = 7.625 < 9.913] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)A374.CB) [> 3.612 = 6.020 < 7.826] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)I319.CB) [> 3.559 = 5.931 < 7.711] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)F232.CB) [> 3.952 = 6.586 < 8.562] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)D393.CB) [> 4.486 = 7.476 < 9.719] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)P315.CB) [> 4.310 = 7.184 < 9.339] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)L337.CB) [> 4.284 = 7.141 < 9.283] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)V397.CB, (T0547)L408.CB) [> 4.456 = 7.427 < 9.655] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)D398.CB) [> 4.696 = 7.827 < 10.175] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)D398.CB) [> 3.489 = 5.815 < 7.559] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L266.CB, (T0547)D316.CB) [> 4.280 = 7.134 < 9.274] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)K264.CB) [> 3.705 = 6.175 < 8.027] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)N88.CB) [> 4.462 = 7.437 < 9.668] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)L313.CB) [> 3.991 = 6.651 < 8.647] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)K310.CB) [> 4.601 = 7.669 < 9.969] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)K310.CB) [> 3.884 = 6.473 < 8.415] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)K311.CB) [> 4.165 = 6.941 < 9.024] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)T291.CB, (T0547)G322.CA) [> 4.356 = 7.261 < 9.439] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)T291.CB, (T0547)S321.CB) [> 3.998 = 6.663 < 8.662] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)Q237.CB) [> 3.604 = 6.007 < 7.810] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)I238.CB) [> 3.618 = 6.029 < 7.838] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)I540.CB) [> 4.677 = 7.795 < 10.133] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)Y545.CB) [> 3.569 = 5.949 < 7.734] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)V436.CB) [> 3.391 = 5.652 < 7.348] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)I540.CB) [> 2.296 = 3.827 < 4.975] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)E435.CB) [> 3.165 = 5.276 < 6.859] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)T409.CB) [> 3.825 = 6.376 < 8.288] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K28.CB, (T0547)A374.CB) [> 3.775 = 6.292 < 8.180] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K27.CB, (T0547)E435.CB) [> 2.349 = 3.915 < 5.089] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)I23.CB, (T0547)E435.CB) [> 3.217 = 5.362 < 6.971] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)V21.CB, (T0547)N373.CB) [> 4.498 = 7.496 < 9.745] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)V21.CB, (T0547)K370.CB) [> 4.191 = 6.986 < 9.082] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)S372.CB) [> 4.079 = 6.798 < 8.838] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)A30.CB) [> 3.195 = 5.325 < 6.922] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)D393.CB, (T0547)H410.CB) [> 4.377 = 7.295 < 9.483] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)I540.CB) [> 2.409 = 4.014 < 5.218] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)I540.CB) [> 4.578 = 7.630 < 9.919] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)A146.CB) [> 4.181 = 6.969 < 9.060] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)G272.CA) [> 4.443 = 7.405 < 9.626] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)I306.CB) [> 4.543 = 7.571 < 9.843] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)Y295.CB) [> 3.222 = 5.370 < 6.981] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G159.CA, (T0547)G192.CA) [> 4.136 = 6.893 < 8.962] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)I537.CB) [> 3.232 = 5.386 < 7.002] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)S208.CB, (T0547)M261.CB) [> 3.360 = 5.600 < 7.280] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)A251.CB) [> 4.638 = 7.730 < 10.048] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G235.CA, (T0547)A251.CB) [> 4.330 = 7.216 < 9.381] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K423.CB, (T0547)V584.CB) [> 4.348 = 7.247 < 9.421] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)S403.CB) [> 4.652 = 7.753 < 10.078] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)V397.CB) [> 4.064 = 6.773 < 8.805] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)K367.CB) [> 4.527 = 7.544 < 9.808] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)G395.CA) [> 3.915 = 6.525 < 8.483] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)F282.CB, (T0547)S368.CB) [> 4.152 = 6.921 < 8.997] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)T239.CB) [> 3.898 = 6.496 < 8.445] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K27.CB, (T0547)N373.CB) [> 3.792 = 6.320 < 8.216] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G159.CA, (T0547)F204.CB) [> 4.626 = 7.710 < 10.023] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)A165.CB) [> 4.636 = 7.726 < 10.044] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)E548.CB) [> 4.567 = 7.612 < 9.896] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)N216.CB, (T0547)K264.CB) [> 4.201 = 7.001 < 9.101] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)A251.CB) [> 4.663 = 7.771 < 10.102] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)I180.CB, (T0547)N221.CB) [> 4.220 = 7.033 < 9.143] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)P178.CB, (T0547)N221.CB) [> 4.473 = 7.454 < 9.690] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L160.CB, (T0547)N216.CB) [> 4.417 = 7.362 < 9.570] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G159.CA, (T0547)L217.CB) [> 4.016 = 6.693 < 8.701] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G159.CA, (T0547)E213.CB) [> 4.362 = 7.271 < 9.452] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)I540.CB) [> 4.416 = 7.360 < 9.568] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)L389.CB) [> 4.325 = 7.208 < 9.371] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)K543.CB) [> 3.804 = 6.340 < 8.242] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)I212.CB, (T0547)A263.CB) [> 4.028 = 6.714 < 8.728] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)I359.CB) [> 4.586 = 7.643 < 9.936] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)R288.CB) [> 4.138 = 6.897 < 8.966] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)S445.CB) [> 4.516 = 7.527 < 9.785] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)L399.CB) [> 3.957 = 6.595 < 8.573] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)N373.CB, (T0547)L408.CB) [> 3.953 = 6.588 < 8.564] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)D383.CB) [> 4.631 = 7.719 < 10.035] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)E285.CB, (T0547)E294.CB) [> 3.473 = 5.789 < 7.525] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)T256.CB, (T0547)N305.CB) [> 4.715 = 7.858 < 10.215] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)Q309.CB) [> 3.953 = 6.588 < 8.565] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)N305.CB) [> 3.990 = 6.651 < 8.646] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)G272.CA) [> 4.529 = 7.548 < 9.813] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)N249.CB, (T0547)Q309.CB) [> 3.714 = 6.190 < 8.048] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)K264.CB) [> 4.346 = 7.243 < 9.415] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)S197.CB, (T0547)L234.CB) [> 3.711 = 6.185 < 8.040] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K196.CB, (T0547)L234.CB) [> 3.929 = 6.548 < 8.512] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)I153.CB, (T0547)N270.CB) [> 4.402 = 7.337 < 9.538] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)S539.CB) [> 4.516 = 7.526 < 9.784] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)E435.CB) [> 4.528 = 7.547 < 9.812] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)E435.CB) [> 4.316 = 7.193 < 9.350] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)V300.CB) [> 4.503 = 7.505 < 9.757] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K76.CB, (T0547)I317.CB) [> 4.502 = 7.503 < 9.754] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G74.CA, (T0547)E314.CB) [> 4.760 = 7.933 < 10.313] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)F73.CB, (T0547)E314.CB) [> 2.398 = 3.996 < 5.195] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)L441.CB) [> 4.001 = 6.668 < 8.669] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)V436.CB) [> 3.320 = 5.534 < 7.194] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)S287.CB) [> 3.853 = 6.421 < 8.347] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)E386.CB) [> 3.384 = 5.641 < 7.333] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)Q433.CB) [> 4.221 = 7.036 < 9.146] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)A268.CB, (T0547)R288.CB) [> 3.384 = 5.641 < 7.333] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)I432.CB) [> 3.430 = 5.716 < 7.431] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)Q437.CB) [> 2.770 = 4.617 < 6.002] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)V436.CB) [> 2.723 = 4.539 < 5.900] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)E435.CB) [> 2.320 = 3.867 < 5.027] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)Q437.CB) [> 3.064 = 5.107 < 6.640] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)R439.CB) [> 4.197 = 6.995 < 9.094] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)Q437.CB) [> 3.913 = 6.522 < 8.479] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)V436.CB) [> 3.892 = 6.487 < 8.433] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)V436.CB) [> 3.518 = 5.864 < 7.623] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)I388.CB) [> 2.956 = 4.927 < 6.405] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)S387.CB) [> 3.264 = 5.440 < 7.071] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K102.CB, (T0547)V325.CB) [> 4.751 = 7.918 < 10.293] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G549.CA, (T0547)T559.CB) [> 4.467 = 7.445 < 9.678] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)D393.CB) [> 3.754 = 6.257 < 8.134] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)L394.CB) [> 4.200 = 7.001 < 9.101] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)L399.CB) [> 4.336 = 7.227 < 9.395] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)K310.CB) [> 3.753 = 6.254 < 8.131] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)E285.CB) [> 3.547 = 5.912 < 7.685] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)S287.CB) [> 3.651 = 6.086 < 7.912] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)K286.CB) [> 2.997 = 4.995 < 6.494] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)D136.CB, (T0547)N161.CB) [> 4.068 = 6.781 < 8.815] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L54.CB, (T0547)A326.CB) [> 4.643 = 7.738 < 10.059] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)V299.CB, (T0547)K310.CB) [> 3.954 = 6.589 < 8.566] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)V299.CB, (T0547)Q309.CB) [> 3.490 = 5.817 < 7.562] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)K283.CB) [> 4.157 = 6.929 < 9.008] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)F282.CB) [> 3.161 = 5.269 < 6.850] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)V397.CB) [> 4.322 = 7.203 < 9.364] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)L275.CB) [> 4.770 = 7.950 < 10.335] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)T390.CB) [> 4.135 = 6.892 < 8.960] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)F392.CB) [> 2.971 = 4.952 < 6.437] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)L391.CB) [> 4.279 = 7.132 < 9.271] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)F392.CB) [> 4.245 = 7.075 < 9.197] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)L391.CB) [> 3.307 = 5.512 < 7.166] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)L394.CB) [> 4.354 = 7.256 < 9.433] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)L389.CB) [> 4.424 = 7.373 < 9.585] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)I388.CB) [> 4.346 = 7.243 < 9.416] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)K415.CB) [> 4.166 = 6.943 < 9.025] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)Y396.CB) [> 4.577 = 7.629 < 9.917] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)A374.CB) [> 3.774 = 6.290 < 8.177] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K27.CB, (T0547)E438.CB) [> 3.908 = 6.514 < 8.468] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)F447.CB) [> 4.564 = 7.607 < 9.889] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)S280.CB, (T0547)K367.CB) [> 4.375 = 7.291 < 9.479] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G133.CA, (T0547)T154.CB) [> 4.512 = 7.520 < 9.776] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)L420.CB) [> 3.751 = 6.252 < 8.127] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)F392.CB) [> 3.177 = 5.295 < 6.884] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)K414.CB) [> 3.677 = 6.128 < 7.967] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)I417.CB) [> 2.880 = 4.800 < 6.240] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)P371.CB) [> 4.193 = 6.989 < 9.086] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)P371.CB) [> 4.444 = 7.407 < 9.629] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)S372.CB) [> 4.360 = 7.267 < 9.447] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)G150.CA) [> 4.444 = 7.407 < 9.629] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)G150.CA, (T0547)A170.CB) [> 4.460 = 7.433 < 9.663] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K171.CB, (T0547)E225.CB) [> 4.371 = 7.285 < 9.470] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)E172.CB, (T0547)E225.CB) [> 4.174 = 6.958 < 9.045] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)I369.CB) [> 4.312 = 7.186 < 9.342] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)I369.CB) [> 2.824 = 4.706 < 6.118] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)T413.CB) [> 4.666 = 7.777 < 10.111] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)I417.CB) [> 3.812 = 6.354 < 8.260] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)A416.CB) [> 4.190 = 6.984 < 9.079] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)A326.CB) [> 3.838 = 6.397 < 8.317] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)G322.CA) [> 4.407 = 7.345 < 9.549] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)R50.CB) [> 4.755 = 7.924 < 10.302] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)H53.CB) [> 4.572 = 7.619 < 9.905] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)V331.CB) [> 4.449 = 7.414 < 9.639] w=0.066 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)A247.CB) [> 3.527 = 5.879 < 7.643] w=0.057 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)Y295.CB) [> 3.965 = 6.609 < 8.591] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0547)E148.CB, (T0547)K175.CB) [> 4.585 = 7.642 < 9.934] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)E162.CB) [> 4.414 = 7.357 < 9.565] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)E162.CB) [> 4.431 = 7.385 < 9.600] w=0.054 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)E314.CB) [> 4.638 = 7.730 < 10.050] w=0.054 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)T291.CB) [> 3.561 = 5.935 < 7.715] w=0.054 to rejected_constraints # Constraint # added constraint: constraint((T0547)K175.CB, (T0547)L224.CB) [> 4.422 = 7.371 < 9.582] w=0.054 to rejected_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)A146.CB) [> 3.794 = 6.323 < 8.220] w=0.054 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)K311.CB) [> 4.525 = 7.542 < 9.805] w=0.054 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)I200.CB) [> 4.638 = 7.730 < 10.049] w=0.054 to rejected_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)Y255.CB) [> 4.403 = 7.338 < 9.539] w=0.054 to rejected_constraints # Constraint # added constraint: constraint((T0547)A146.CB, (T0547)A170.CB) [> 4.028 = 6.713 < 8.727] w=0.054 to rejected_constraints # Constraint # added constraint: constraint((T0547)F174.CB, (T0547)L224.CB) [> 3.247 = 5.412 < 7.036] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)K310.CB) [> 3.884 = 6.473 < 8.415] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)E250.CB) [> 4.502 = 7.503 < 9.754] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)G322.CA) [> 4.213 = 7.022 < 9.128] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)V397.CB) [> 3.184 = 5.307 < 6.899] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)K175.CB) [> 3.527 = 5.878 < 7.641] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I145.CB, (T0547)K175.CB) [> 3.526 = 5.877 < 7.640] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)A147.CB, (T0547)K175.CB) [> 3.505 = 5.842 < 7.594] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)I388.CB) [> 3.832 = 6.387 < 8.303] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)E435.CB) [> 4.278 = 7.131 < 9.270] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G107.CA, (T0547)F318.CB) [> 4.623 = 7.705 < 10.016] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)E125.CB, (T0547)E148.CB) [> 4.578 = 7.629 < 9.918] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)H410.CB) [> 4.730 = 7.883 < 10.248] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L206.CB, (T0547)L258.CB) [> 4.564 = 7.607 < 9.888] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)S387.CB, (T0547)Y396.CB) [> 4.140 = 6.899 < 8.969] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)F340.CB, (T0547)L411.CB) [> 4.630 = 7.717 < 10.033] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)G395.CA) [> 3.386 = 5.643 < 7.336] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)N179.CB) [> 4.573 = 7.621 < 9.907] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)E406.CB) [> 4.039 = 6.732 < 8.751] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)F174.CB) [> 3.229 = 5.382 < 6.997] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L211.CB, (T0547)G262.CA) [> 4.090 = 6.816 < 8.861] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)A251.CB) [> 3.496 = 5.826 < 7.574] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)V94.CB, (T0547)A127.CB) [> 4.394 = 7.323 < 9.519] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)S445.CB) [> 4.048 = 6.746 < 8.770] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N425.CB, (T0547)F444.CB) [> 3.952 = 6.587 < 8.563] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q424.CB, (T0547)L563.CB) [> 3.484 = 5.806 < 7.548] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q424.CB, (T0547)D562.CB) [> 4.119 = 6.865 < 8.925] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)Q448.CB) [> 3.270 = 5.450 < 7.084] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)A307.CB) [> 3.301 = 5.501 < 7.152] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)A307.CB) [> 3.911 = 6.518 < 8.474] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)T559.CB) [> 4.221 = 7.034 < 9.145] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)K283.CB) [> 3.790 = 6.316 < 8.211] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)D401.CB) [> 4.348 = 7.247 < 9.421] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)K286.CB) [> 4.026 = 6.709 < 8.722] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)A268.CB) [> 4.007 = 6.679 < 8.682] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)V397.CB) [> 3.726 = 6.210 < 8.073] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)H384.CB) [> 3.876 = 6.459 < 8.397] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)L313.CB) [> 4.073 = 6.788 < 8.824] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)L313.CB) [> 3.915 = 6.525 < 8.482] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)I432.CB) [> 3.331 = 5.552 < 7.217] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)V547.CB) [> 4.567 = 7.612 < 9.895] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)F282.CB) [> 4.679 = 7.798 < 10.137] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)L385.CB) [> 3.568 = 5.947 < 7.732] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)D383.CB) [> 3.874 = 6.457 < 8.394] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)Q424.CB) [> 3.600 = 6.000 < 7.800] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)S387.CB) [> 4.289 = 7.148 < 9.293] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)Y396.CB) [> 3.447 = 5.746 < 7.469] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)Y396.CB) [> 4.450 = 7.417 < 9.642] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)E546.CB) [> 4.431 = 7.385 < 9.601] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)T559.CB) [> 4.098 = 6.831 < 8.880] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)Y545.CB) [> 4.501 = 7.502 < 9.752] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)I382.CB) [> 3.513 = 5.855 < 7.611] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)S381.CB) [> 3.762 = 6.271 < 8.152] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)K203.CB) [> 4.251 = 7.085 < 9.210] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)K423.CB) [> 2.964 = 4.939 < 6.421] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)K423.CB) [> 3.962 = 6.603 < 8.584] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)F204.CB) [> 3.876 = 6.460 < 8.398] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)A147.CB) [> 4.554 = 7.590 < 9.868] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)I306.CB) [> 2.848 = 4.746 < 6.170] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)E294.CB, (T0547)A307.CB) [> 2.716 = 4.526 < 5.884] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)E294.CB, (T0547)I306.CB) [> 3.998 = 6.663 < 8.661] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)R293.CB, (T0547)I306.CB) [> 3.458 = 5.763 < 7.492] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I432.CB, (T0547)T559.CB) [> 3.670 = 6.117 < 7.952] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)N425.CB) [> 3.601 = 6.002 < 7.803] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)N425.CB) [> 3.205 = 5.342 < 6.944] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)S208.CB, (T0547)K260.CB) [> 4.185 = 6.976 < 9.069] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)A127.CB, (T0547)T228.CB) [> 4.473 = 7.455 < 9.691] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)R293.CB) [> 2.289 = 3.815 < 4.959] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L97.CB, (T0547)S321.CB) [> 4.736 = 7.894 < 10.262] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)R259.CB, (T0547)E314.CB) [> 3.420 = 5.700 < 7.410] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)K311.CB) [> 4.295 = 7.158 < 9.305] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)T209.CB, (T0547)E257.CB) [> 4.272 = 7.119 < 9.255] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)V547.CB) [> 3.891 = 6.485 < 8.430] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)I551.CB) [> 4.561 = 7.602 < 9.883] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)A553.CB) [> 4.056 = 6.760 < 8.788] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)L446.CB) [> 2.585 = 4.308 < 5.600] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)S445.CB) [> 3.381 = 5.635 < 7.325] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)N132.CB) [> 4.362 = 7.270 < 9.452] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)S449.CB, (T0547)E535.CB) [> 2.760 = 4.601 < 5.981] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)V547.CB) [> 4.375 = 7.291 < 9.478] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N425.CB, (T0547)Q448.CB) [> 3.349 = 5.582 < 7.257] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)V397.CB) [> 4.170 = 6.951 < 9.036] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)G395.CA) [> 3.739 = 6.232 < 8.102] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)V397.CB) [> 3.922 = 6.536 < 8.497] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)Y396.CB) [> 4.152 = 6.921 < 8.997] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)N253.CB) [> 4.757 = 7.928 < 10.307] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)D168.CB, (T0547)N221.CB) [> 4.144 = 6.907 < 8.979] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I153.CB, (T0547)F318.CB) [> 4.710 = 7.851 < 10.206] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N152.CB, (T0547)A170.CB) [> 4.623 = 7.704 < 10.016] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G150.CA, (T0547)T228.CB) [> 4.322 = 7.203 < 9.364] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)V300.CB) [> 4.321 = 7.201 < 9.362] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)A296.CB) [> 3.677 = 6.129 < 7.968] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y75.CB, (T0547)I317.CB) [> 3.947 = 6.579 < 8.553] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y75.CB, (T0547)D316.CB) [> 2.860 = 4.767 < 6.197] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y75.CB, (T0547)P315.CB) [> 3.815 = 6.358 < 8.265] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)K76.CB) [> 3.108 = 5.180 < 6.734] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)K286.CB) [> 3.211 = 5.352 < 6.958] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)A536.CB) [> 4.353 = 7.255 < 9.431] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)I407.CB) [> 4.616 = 7.693 < 10.001] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)A536.CB) [> 3.205 = 5.342 < 6.945] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)G544.CA) [> 4.611 = 7.685 < 9.990] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)V436.CB) [> 4.576 = 7.627 < 9.915] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)Q437.CB) [> 3.929 = 6.548 < 8.512] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)V436.CB) [> 2.307 = 3.845 < 4.999] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)H410.CB) [> 3.745 = 6.241 < 8.113] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)N373.CB) [> 4.425 = 7.375 < 9.588] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)A374.CB) [> 3.874 = 6.457 < 8.394] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N13.CB, (T0547)L54.CB) [> 2.943 = 4.904 < 6.376] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)A536.CB, (T0547)L583.CB) [> 2.693 = 4.488 < 5.834] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)A536.CB, (T0547)K582.CB) [> 3.816 = 6.359 < 8.267] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N373.CB, (T0547)R402.CB) [> 4.124 = 6.873 < 8.934] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)Q400.CB) [> 4.506 = 7.509 < 9.762] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)A416.CB) [> 4.245 = 7.075 < 9.197] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)S387.CB) [> 4.647 = 7.744 < 10.068] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)F392.CB) [> 4.614 = 7.690 < 9.997] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)D383.CB) [> 4.630 = 7.717 < 10.031] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K286.CB, (T0547)F324.CB) [> 4.180 = 6.967 < 9.057] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N284.CB, (T0547)Y295.CB) [> 3.274 = 5.457 < 7.095] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)N284.CB) [> 3.838 = 6.396 < 8.315] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)R323.CB) [> 4.766 = 7.944 < 10.327] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L266.CB, (T0547)K310.CB) [> 4.390 = 7.316 < 9.511] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N265.CB, (T0547)E314.CB) [> 4.205 = 7.009 < 9.111] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N265.CB, (T0547)K311.CB) [> 4.200 = 7.000 < 9.100] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)T256.CB, (T0547)Q309.CB) [> 3.061 = 5.101 < 6.631] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)N284.CB) [> 4.263 = 7.105 < 9.237] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)T291.CB) [> 4.569 = 7.615 < 9.900] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)R288.CB) [> 4.387 = 7.311 < 9.505] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G198.CA, (T0547)H233.CB) [> 4.255 = 7.091 < 9.218] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)S197.CB, (T0547)H233.CB) [> 3.581 = 5.968 < 7.759] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)S236.CB) [> 3.983 = 6.638 < 8.630] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)P243.CB) [> 3.901 = 6.501 < 8.451] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)T559.CB) [> 3.861 = 6.435 < 8.366] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)F174.CB, (T0547)K222.CB) [> 4.053 = 6.754 < 8.781] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)S445.CB) [> 4.151 = 6.918 < 8.993] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)D428.CB) [> 2.935 = 4.892 < 6.360] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)L419.CB) [> 4.013 = 6.688 < 8.695] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)L419.CB) [> 4.356 = 7.259 < 9.437] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)E314.CB) [> 4.130 = 6.883 < 8.948] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L117.CB, (T0547)I153.CB) [> 4.531 = 7.552 < 9.818] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N373.CB, (T0547)I382.CB) [> 3.257 = 5.429 < 7.057] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)L418.CB) [> 4.143 = 6.906 < 8.977] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)I432.CB) [> 3.169 = 5.282 < 6.867] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)D434.CB) [> 3.472 = 5.786 < 7.522] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)K311.CB) [> 3.565 = 5.941 < 7.723] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K286.CB, (T0547)I319.CB) [> 3.417 = 5.696 < 7.404] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)S287.CB) [> 2.681 = 4.468 < 5.808] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)K286.CB) [> 3.358 = 5.597 < 7.277] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)V436.CB) [> 4.435 = 7.391 < 9.608] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K286.CB, (T0547)F318.CB) [> 4.183 = 6.971 < 9.063] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)L244.CB) [> 4.154 = 6.923 < 9.000] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)A307.CB) [> 4.193 = 6.989 < 9.085] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)T291.CB, (T0547)R323.CB) [> 4.634 = 7.723 < 10.040] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)L391.CB) [> 4.546 = 7.576 < 9.849] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)L391.CB) [> 3.557 = 5.928 < 7.706] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)F392.CB) [> 3.664 = 6.106 < 7.938] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)V397.CB) [> 4.268 = 7.114 < 9.248] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)F392.CB) [> 4.402 = 7.337 < 9.538] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)E285.CB) [> 4.357 = 7.261 < 9.440] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)L313.CB) [> 3.994 = 6.657 < 8.654] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)V397.CB) [> 4.161 = 6.935 < 9.015] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)L266.CB) [> 4.682 = 7.804 < 10.145] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G101.CA, (T0547)E125.CB) [> 4.278 = 7.131 < 9.270] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)I551.CB) [> 3.245 = 5.408 < 7.031] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I166.CB, (T0547)L218.CB) [> 4.279 = 7.132 < 9.272] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)E278.CB) [> 4.239 = 7.065 < 9.185] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)E548.CB) [> 3.487 = 5.811 < 7.555] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)L419.CB) [> 4.217 = 7.028 < 9.137] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)L420.CB) [> 4.306 = 7.176 < 9.329] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)M120.CB, (T0547)A146.CB) [> 3.146 = 5.243 < 6.816] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)E125.CB, (T0547)H151.CB) [> 3.372 = 5.619 < 7.305] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)E125.CB, (T0547)N152.CB) [> 3.806 = 6.344 < 8.247] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)S236.CB) [> 3.319 = 5.531 < 7.190] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)L418.CB) [> 3.486 = 5.810 < 7.554] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)E314.CB) [> 3.976 = 6.627 < 8.615] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)G101.CA) [> 3.832 = 6.386 < 8.302] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)E285.CB) [> 4.726 = 7.877 < 10.240] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)E285.CB, (T0547)F324.CB) [> 4.611 = 7.685 < 9.991] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)D398.CB) [> 4.555 = 7.591 < 9.869] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)I382.CB) [> 4.719 = 7.865 < 10.225] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N373.CB, (T0547)A405.CB) [> 4.720 = 7.866 < 10.226] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)A247.CB) [> 4.590 = 7.650 < 9.945] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)S381.CB) [> 4.249 = 7.082 < 9.206] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N141.CB, (T0547)E162.CB) [> 4.475 = 7.458 < 9.695] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)L244.CB) [> 4.082 = 6.803 < 8.844] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)W194.CB, (T0547)P243.CB) [> 2.170 = 3.617 < 4.703] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)W194.CB, (T0547)H242.CB) [> 3.873 = 6.455 < 8.392] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)Y440.CB) [> 4.617 = 7.696 < 10.005] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)R439.CB) [> 3.721 = 6.202 < 8.062] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K28.CB, (T0547)R439.CB) [> 2.577 = 4.295 < 5.583] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K28.CB, (T0547)E438.CB) [> 4.084 = 6.806 < 8.848] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K27.CB, (T0547)R439.CB) [> 4.094 = 6.823 < 8.870] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K27.CB, (T0547)V436.CB) [> 3.547 = 5.912 < 7.686] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)D586.CB) [> 4.247 = 7.079 < 9.203] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)H410.CB) [> 4.312 = 7.186 < 9.342] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)D401.CB) [> 4.600 = 7.666 < 9.966] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)S403.CB) [> 4.179 = 6.965 < 9.055] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)R402.CB) [> 4.132 = 6.887 < 8.953] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)D428.CB) [> 4.708 = 7.847 < 10.202] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)L378.CB) [> 4.171 = 6.952 < 9.038] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)H242.CB) [> 4.613 = 7.689 < 9.996] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)F144.CB) [> 4.775 = 7.959 < 10.347] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)L583.CB) [> 4.619 = 7.699 < 10.008] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)Y545.CB) [> 4.551 = 7.585 < 9.860] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K27.CB, (T0547)Q437.CB) [> 3.682 = 6.137 < 7.978] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)V21.CB, (T0547)I32.CB) [> 4.028 = 6.713 < 8.726] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G19.CA, (T0547)N373.CB) [> 4.254 = 7.091 < 9.218] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N11.CB, (T0547)N328.CB) [> 4.051 = 6.752 < 8.778] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)N11.CB, (T0547)L54.CB) [> 3.547 = 5.911 < 7.684] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G10.CA, (T0547)N328.CB) [> 3.090 = 5.150 < 6.695] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)I432.CB) [> 4.473 = 7.455 < 9.692] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)K415.CB) [> 4.616 = 7.694 < 10.002] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)G395.CA) [> 3.388 = 5.647 < 7.341] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)E386.CB) [> 3.916 = 6.527 < 8.485] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)E386.CB) [> 4.116 = 6.860 < 8.918] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)D383.CB) [> 3.971 = 6.619 < 8.604] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)E278.CB, (T0547)A327.CB) [> 2.817 = 4.695 < 6.104] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)A170.CB) [> 4.372 = 7.286 < 9.472] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)L358.CB) [> 4.254 = 7.090 < 9.217] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)L418.CB) [> 3.544 = 5.906 < 7.678] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)T413.CB) [> 4.043 = 6.739 < 8.760] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)L418.CB) [> 3.031 = 5.051 < 6.567] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)K370.CB) [> 4.386 = 7.310 < 9.504] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)A416.CB) [> 3.120 = 5.199 < 6.759] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)G395.CA) [> 3.561 = 5.935 < 7.715] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)I417.CB) [> 4.281 = 7.135 < 9.275] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)I417.CB) [> 4.486 = 7.477 < 9.720] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)G395.CA) [> 4.293 = 7.156 < 9.303] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)I412.CB) [> 3.569 = 5.948 < 7.732] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)D393.CB) [> 4.307 = 7.178 < 9.332] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)I478.CB) [> 4.555 = 7.592 < 9.869] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)I478.CB) [> 3.132 = 5.220 < 6.786] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)E250.CB) [> 4.605 = 7.676 < 9.978] w=0.053 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)T291.CB) [> 2.880 = 4.800 < 6.240] w=0.042 to rejected_constraints # Constraint # added constraint: constraint((T0547)I200.CB, (T0547)S236.CB) [> 3.851 = 6.418 < 8.343] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)K311.CB) [> 4.098 = 6.831 < 8.880] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)T390.CB) [> 4.267 = 7.112 < 9.245] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I382.CB, (T0547)L394.CB) [> 4.328 = 7.213 < 9.377] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)D383.CB, (T0547)D393.CB) [> 3.644 = 6.074 < 7.896] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)Y440.CB) [> 3.652 = 6.086 < 7.912] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L266.CB, (T0547)E314.CB) [> 3.753 = 6.255 < 8.132] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G64.CA, (T0547)A81.CB) [> 4.476 = 7.460 < 9.697] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L108.CB, (T0547)N123.CB) [> 4.425 = 7.376 < 9.588] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A214.CB, (T0547)A263.CB) [> 4.229 = 7.048 < 9.162] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N221.CB, (T0547)A263.CB) [> 4.488 = 7.479 < 9.723] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I254.CB, (T0547)A263.CB) [> 3.939 = 6.565 < 8.534] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)D401.CB) [> 3.663 = 6.105 < 7.937] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)K99.CB) [> 4.531 = 7.552 < 9.817] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)L100.CB) [> 3.804 = 6.340 < 8.242] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)G101.CA) [> 3.841 = 6.402 < 8.323] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)S387.CB) [> 4.227 = 7.046 < 9.159] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)K286.CB) [> 3.792 = 6.320 < 8.216] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)I432.CB) [> 4.606 = 7.677 < 9.980] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)G549.CA) [> 3.286 = 5.477 < 7.120] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)G549.CA) [> 3.660 = 6.100 < 7.930] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)V547.CB) [> 2.900 = 4.834 < 6.284] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)Y279.CB) [> 3.232 = 5.387 < 7.003] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)T413.CB) [> 4.559 = 7.598 < 9.877] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)V547.CB) [> 3.235 = 5.391 < 7.008] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)R288.CB, (T0547)L313.CB) [> 2.968 = 4.947 < 6.431] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)Y377.CB) [> 4.657 = 7.761 < 10.090] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)Y377.CB) [> 4.357 = 7.262 < 9.440] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y63.CB, (T0547)I319.CB) [> 4.332 = 7.220 < 9.387] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)F204.CB) [> 3.825 = 6.374 < 8.286] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)R288.CB, (T0547)P315.CB) [> 4.092 = 6.819 < 8.865] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)A536.CB) [> 2.932 = 4.887 < 6.354] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)I538.CB) [> 4.169 = 6.948 < 9.033] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)E535.CB) [> 3.580 = 5.967 < 7.757] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)K352.CB) [> 3.512 = 5.853 < 7.609] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A147.CB, (T0547)N179.CB) [> 4.535 = 7.558 < 9.825] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)A536.CB) [> 4.193 = 6.989 < 9.085] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K267.CB, (T0547)L313.CB) [> 4.305 = 7.175 < 9.327] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)L418.CB) [> 3.870 = 6.449 < 8.384] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q400.CB, (T0547)L446.CB) [> 3.122 = 5.203 < 6.764] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q400.CB, (T0547)F447.CB) [> 3.292 = 5.486 < 7.132] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A416.CB, (T0547)Q448.CB) [> 3.243 = 5.406 < 7.027] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A416.CB, (T0547)S449.CB) [> 4.494 = 7.489 < 9.736] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)Q448.CB) [> 3.695 = 6.158 < 8.005] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)F447.CB) [> 4.375 = 7.292 < 9.480] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K423.CB, (T0547)L563.CB) [> 2.538 = 4.230 < 5.500] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q424.CB, (T0547)F444.CB) [> 3.965 = 6.608 < 8.590] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q424.CB, (T0547)T559.CB) [> 3.910 = 6.517 < 8.473] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K267.CB, (T0547)I317.CB) [> 3.935 = 6.559 < 8.526] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)D298.CB, (T0547)Q309.CB) [> 4.196 = 6.994 < 9.092] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)Q424.CB) [> 3.262 = 5.436 < 7.067] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)A374.CB) [> 3.851 = 6.418 < 8.344] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)A431.CB) [> 4.283 = 7.138 < 9.280] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L117.CB, (T0547)L139.CB) [> 4.470 = 7.450 < 9.685] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)L375.CB) [> 3.905 = 6.509 < 8.461] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N373.CB, (T0547)H384.CB) [> 4.182 = 6.970 < 9.062] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)R439.CB) [> 3.972 = 6.620 < 8.605] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)V436.CB) [> 4.612 = 7.686 < 9.992] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)N425.CB) [> 3.656 = 6.093 < 7.921] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)L429.CB) [> 2.679 = 4.464 < 5.804] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)I432.CB) [> 3.724 = 6.207 < 8.070] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)L429.CB) [> 4.532 = 7.553 < 9.819] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)S287.CB) [> 3.699 = 6.165 < 8.015] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)L313.CB) [> 4.094 = 6.823 < 8.869] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A268.CB, (T0547)L313.CB) [> 2.964 = 4.940 < 6.423] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)K414.CB) [> 2.843 = 4.739 < 6.161] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)K415.CB) [> 2.872 = 4.787 < 6.223] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)D393.CB) [> 4.099 = 6.832 < 8.882] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)L394.CB) [> 3.696 = 6.160 < 8.008] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)L420.CB) [> 3.874 = 6.457 < 8.395] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N152.CB, (T0547)G181.CA) [> 4.009 = 6.682 < 8.687] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)V277.CB) [> 3.299 = 5.499 < 7.149] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)K286.CB) [> 4.435 = 7.392 < 9.610] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)R402.CB) [> 3.930 = 6.550 < 8.515] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)E376.CB) [> 3.723 = 6.206 < 8.067] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)I306.CB) [> 3.726 = 6.210 < 8.072] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K304.CB, (T0547)F324.CB) [> 2.808 = 4.681 < 6.085] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)D562.CB) [> 3.601 = 6.002 < 7.803] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)G205.CA) [> 3.629 = 6.048 < 7.862] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)E546.CB) [> 4.425 = 7.375 < 9.587] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)V547.CB) [> 2.609 = 4.348 < 5.652] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)F447.CB) [> 2.852 = 4.754 < 6.180] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)S449.CB) [> 3.507 = 5.845 < 7.598] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)L446.CB) [> 4.150 = 6.916 < 8.991] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)F447.CB) [> 2.596 = 4.327 < 5.625] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)S449.CB) [> 4.154 = 6.924 < 9.001] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)F447.CB) [> 3.818 = 6.363 < 8.272] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)L375.CB) [> 3.509 = 5.848 < 7.603] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)D380.CB) [> 3.449 = 5.749 < 7.473] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)I551.CB) [> 4.308 = 7.180 < 9.334] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)F447.CB, (T0547)A536.CB) [> 4.738 = 7.897 < 10.266] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E548.CB, (T0547)T559.CB) [> 3.987 = 6.644 < 8.637] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G159.CA, (T0547)I193.CB) [> 3.967 = 6.612 < 8.596] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)I193.CB) [> 4.153 = 6.921 < 8.998] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)R183.CB, (T0547)I193.CB) [> 4.157 = 6.929 < 9.007] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)I193.CB) [> 3.077 = 5.128 < 6.666] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)T207.CB) [> 4.028 = 6.714 < 8.728] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)E210.CB) [> 2.768 = 4.613 < 5.997] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)L211.CB) [> 2.868 = 4.780 < 6.214] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)A214.CB) [> 3.894 = 6.490 < 8.437] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)L258.CB) [> 4.615 = 7.692 < 10.000] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)H233.CB) [> 4.180 = 6.966 < 9.056] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)K95.CB) [> 4.641 = 7.735 < 10.056] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L100.CB, (T0547)V325.CB) [> 4.739 = 7.898 < 10.268] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)E210.CB) [> 4.748 = 7.913 < 10.286] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A127.CB, (T0547)N179.CB) [> 4.490 = 7.483 < 9.728] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)T209.CB, (T0547)M261.CB) [> 4.179 = 6.966 < 9.055] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E294.CB, (T0547)F318.CB) [> 4.483 = 7.472 < 9.714] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)I306.CB) [> 4.271 = 7.118 < 9.254] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)L292.CB) [> 2.901 = 4.836 < 6.286] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)R293.CB) [> 3.641 = 6.069 < 7.890] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)E294.CB) [> 2.846 = 4.743 < 6.165] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)R293.CB, (T0547)A307.CB) [> 4.509 = 7.514 < 9.768] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)I540.CB) [> 4.662 = 7.771 < 10.102] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)A307.CB) [> 4.484 = 7.474 < 9.716] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)E308.CB) [> 4.038 = 6.730 < 8.749] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)A251.CB) [> 3.882 = 6.470 < 8.412] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)P128.CB, (T0547)F227.CB) [> 4.378 = 7.296 < 9.485] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)G273.CA) [> 4.094 = 6.824 < 8.871] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)Q554.CB) [> 3.804 = 6.340 < 8.242] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)N541.CB) [> 3.709 = 6.182 < 8.037] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)A327.CB) [> 4.625 = 7.708 < 10.020] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)I567.CB) [> 4.307 = 7.179 < 9.333] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)G549.CA) [> 4.247 = 7.079 < 9.203] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)E548.CB) [> 3.982 = 6.637 < 8.629] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)E546.CB) [> 4.246 = 7.076 < 9.199] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)Q309.CB) [> 4.437 = 7.396 < 9.614] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)T207.CB) [> 4.344 = 7.239 < 9.411] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)R293.CB, (T0547)K310.CB) [> 4.297 = 7.161 < 9.310] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)R293.CB) [> 2.865 = 4.776 < 6.208] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A127.CB, (T0547)I153.CB) [> 3.707 = 6.179 < 8.032] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)L560.CB) [> 4.185 = 6.975 < 9.067] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)E314.CB) [> 4.683 = 7.805 < 10.147] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)T291.CB, (T0547)E320.CB) [> 3.841 = 6.402 < 8.323] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)R293.CB, (T0547)Q309.CB) [> 3.566 = 5.943 < 7.725] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E294.CB, (T0547)Q309.CB) [> 3.971 = 6.619 < 8.604] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)Q309.CB) [> 3.216 = 5.361 < 6.969] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)K245.CB) [> 4.685 = 7.809 < 10.151] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)L248.CB) [> 3.161 = 5.268 < 6.848] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)L248.CB) [> 3.849 = 6.414 < 8.339] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L97.CB, (T0547)A127.CB) [> 4.344 = 7.239 < 9.411] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N105.CB, (T0547)A127.CB) [> 3.674 = 6.123 < 7.959] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G111.CA, (T0547)F134.CB) [> 4.196 = 6.993 < 9.091] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)P335.CB) [> 4.266 = 7.110 < 9.242] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)I407.CB) [> 4.301 = 7.169 < 9.320] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)G205.CA) [> 2.214 = 3.690 < 4.797] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)H233.CB) [> 4.201 = 7.001 < 9.101] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)T291.CB, (T0547)I319.CB) [> 3.988 = 6.646 < 8.640] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N425.CB, (T0547)A536.CB) [> 4.354 = 7.257 < 9.434] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)I432.CB) [> 4.109 = 6.848 < 8.902] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)E435.CB) [> 3.309 = 5.515 < 7.170] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)V436.CB) [> 3.444 = 5.739 < 7.461] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)I432.CB) [> 4.619 = 7.698 < 10.007] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)I306.CB) [> 4.187 = 6.979 < 9.073] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)A307.CB) [> 3.964 = 6.606 < 8.588] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)R402.CB) [> 4.546 = 7.576 < 9.849] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)R402.CB) [> 4.337 = 7.228 < 9.396] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)R402.CB) [> 2.971 = 4.952 < 6.437] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V547.CB, (T0547)T559.CB) [> 4.421 = 7.369 < 9.579] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)P451.CB) [> 4.416 = 7.360 < 9.568] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)Q448.CB) [> 4.180 = 6.966 < 9.056] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I153.CB, (T0547)H231.CB) [> 4.530 = 7.550 < 9.815] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I157.CB, (T0547)A170.CB) [> 4.459 = 7.432 < 9.662] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I166.CB, (T0547)K175.CB) [> 4.446 = 7.410 < 9.633] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A170.CB, (T0547)I180.CB) [> 3.984 = 6.639 < 8.631] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E172.CB, (T0547)N221.CB) [> 4.254 = 7.090 < 9.216] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E172.CB, (T0547)K222.CB) [> 2.424 = 4.040 < 5.252] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)N201.CB) [> 4.640 = 7.733 < 10.053] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)T207.CB) [> 4.293 = 7.155 < 9.301] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)N201.CB) [> 2.373 = 3.955 < 5.141] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)S208.CB) [> 4.640 = 7.733 < 10.052] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)I238.CB) [> 3.236 = 5.393 < 7.011] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)E240.CB) [> 3.360 = 5.599 < 7.279] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)H242.CB) [> 4.498 = 7.496 < 9.745] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)P243.CB) [> 3.957 = 6.596 < 8.574] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A195.CB, (T0547)Y363.CB) [> 3.968 = 6.613 < 8.596] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K196.CB, (T0547)P243.CB) [> 3.103 = 5.171 < 6.723] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K196.CB, (T0547)A247.CB) [> 4.535 = 7.558 < 9.825] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I200.CB, (T0547)H233.CB) [> 3.167 = 5.278 < 6.861] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I200.CB, (T0547)L234.CB) [> 4.711 = 7.851 < 10.207] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I200.CB, (T0547)G235.CA) [> 2.645 = 4.408 < 5.730] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)L365.CB) [> 4.050 = 6.749 < 8.774] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)N284.CB) [> 3.876 = 6.460 < 8.398] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)Y295.CB) [> 4.570 = 7.616 < 9.901] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)L100.CB) [> 4.130 = 6.884 < 8.949] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)F79.CB) [> 4.604 = 7.674 < 9.976] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)G101.CA) [> 3.627 = 6.045 < 7.858] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A69.CB, (T0547)L303.CB) [> 4.776 = 7.960 < 10.348] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E72.CB, (T0547)E314.CB) [> 4.741 = 7.902 < 10.273] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K76.CB, (T0547)D316.CB) [> 2.597 = 4.328 < 5.627] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)A296.CB) [> 3.794 = 6.323 < 8.220] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)V300.CB) [> 4.755 = 7.925 < 10.303] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)G101.CA) [> 4.684 = 7.806 < 10.148] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)A110.CB) [> 4.785 = 7.975 < 10.367] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)H329.CB) [> 4.475 = 7.459 < 9.696] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)N123.CB) [> 4.057 = 6.762 < 8.791] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)E552.CB) [> 4.724 = 7.874 < 10.236] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)A121.CB) [> 4.736 = 7.893 < 10.261] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)I551.CB) [> 3.807 = 6.345 < 8.248] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)E552.CB) [> 4.795 = 7.992 < 10.389] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)F324.CB) [> 4.651 = 7.752 < 10.077] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)I551.CB) [> 4.018 = 6.696 < 8.705] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K95.CB, (T0547)A121.CB) [> 4.708 = 7.847 < 10.201] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L97.CB, (T0547)F324.CB) [> 4.059 = 6.764 < 8.794] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E109.CB, (T0547)G273.CA) [> 4.796 = 7.994 < 10.392] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)G126.CA) [> 4.467 = 7.445 < 9.679] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A119.CB, (T0547)M149.CB) [> 4.747 = 7.911 < 10.284] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N152.CB, (T0547)K177.CB) [> 3.218 = 5.364 < 6.973] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)S287.CB) [> 4.444 = 7.406 < 9.628] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E278.CB, (T0547)R323.CB) [> 4.669 = 7.781 < 10.115] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y279.CB, (T0547)I369.CB) [> 4.096 = 6.827 < 8.875] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K286.CB, (T0547)A296.CB) [> 3.171 = 5.285 < 6.871] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N297.CB, (T0547)E308.CB) [> 4.236 = 7.060 < 9.178] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)D298.CB, (T0547)E308.CB) [> 4.269 = 7.115 < 9.249] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V299.CB, (T0547)E308.CB) [> 4.506 = 7.509 < 9.762] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V300.CB, (T0547)Q309.CB) [> 4.196 = 6.993 < 9.091] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V300.CB, (T0547)K310.CB) [> 3.321 = 5.534 < 7.195] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)F301.CB, (T0547)K310.CB) [> 4.570 = 7.616 < 9.901] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)F301.CB, (T0547)K311.CB) [> 3.664 = 6.107 < 7.939] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I302.CB, (T0547)K311.CB) [> 4.420 = 7.366 < 9.576] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A307.CB, (T0547)D316.CB) [> 4.634 = 7.723 < 10.040] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)H329.CB, (T0547)A416.CB) [> 4.502 = 7.503 < 9.754] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)K352.CB) [> 4.555 = 7.591 < 9.869] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)D383.CB) [> 4.647 = 7.745 < 10.068] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)L394.CB) [> 4.476 = 7.461 < 9.699] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)T409.CB) [> 4.601 = 7.668 < 9.968] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)T413.CB) [> 4.613 = 7.688 < 9.994] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)H384.CB) [> 3.982 = 6.637 < 8.628] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)D401.CB) [> 4.756 = 7.926 < 10.304] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)I407.CB) [> 3.628 = 6.047 < 7.860] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)D401.CB) [> 4.624 = 7.707 < 10.019] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)Q448.CB) [> 4.276 = 7.126 < 9.264] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)D434.CB, (T0547)S445.CB) [> 3.757 = 6.262 < 8.141] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)V277.CB) [> 4.688 = 7.813 < 10.156] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)Y295.CB) [> 4.525 = 7.542 < 9.804] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)L275.CB) [> 4.266 = 7.111 < 9.244] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)E285.CB) [> 3.111 = 5.185 < 6.741] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)A296.CB) [> 4.255 = 7.092 < 9.220] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)G273.CA) [> 3.706 = 6.176 < 8.029] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)Y295.CB) [> 3.335 = 5.559 < 7.227] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A247.CB, (T0547)G272.CA) [> 4.783 = 7.972 < 10.363] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A247.CB, (T0547)G273.CA) [> 4.572 = 7.620 < 9.906] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)G273.CA) [> 4.379 = 7.298 < 9.488] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)F301.CB) [> 4.172 = 6.954 < 9.040] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N249.CB, (T0547)V299.CB) [> 4.297 = 7.162 < 9.311] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N249.CB, (T0547)K310.CB) [> 4.316 = 7.193 < 9.351] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)I302.CB) [> 3.185 = 5.308 < 6.900] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I254.CB, (T0547)I269.CB) [> 4.748 = 7.914 < 10.288] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)Q309.CB) [> 4.581 = 7.635 < 9.925] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)L313.CB) [> 3.629 = 6.048 < 7.862] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)T256.CB, (T0547)N265.CB) [> 4.214 = 7.024 < 9.131] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)T256.CB, (T0547)L266.CB) [> 4.702 = 7.837 < 10.188] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)T256.CB, (T0547)L313.CB) [> 3.754 = 6.256 < 8.133] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)R259.CB, (T0547)Q309.CB) [> 4.397 = 7.329 < 9.528] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)R259.CB, (T0547)L313.CB) [> 4.648 = 7.747 < 10.071] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)R259.CB, (T0547)P315.CB) [> 3.904 = 6.506 < 8.458] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K264.CB, (T0547)E314.CB) [> 4.782 = 7.970 < 10.361] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N265.CB, (T0547)K310.CB) [> 4.118 = 6.863 < 8.922] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N265.CB, (T0547)P315.CB) [> 4.157 = 6.928 < 9.006] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)V547.CB) [> 3.575 = 5.958 < 7.745] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)S287.CB) [> 4.226 = 7.044 < 9.157] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)K310.CB) [> 3.752 = 6.254 < 8.130] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)E250.CB) [> 4.235 = 7.058 < 9.175] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)L399.CB) [> 4.271 = 7.118 < 9.253] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)D428.CB) [> 2.769 = 4.615 < 6.000] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)Y396.CB) [> 4.194 = 6.989 < 9.086] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)Y545.CB) [> 3.518 = 5.863 < 7.621] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)S539.CB, (T0547)G549.CA) [> 3.829 = 6.381 < 8.295] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)S539.CB, (T0547)I550.CB) [> 3.871 = 6.451 < 8.386] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)S539.CB, (T0547)I551.CB) [> 4.476 = 7.461 < 9.699] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)L419.CB) [> 3.650 = 6.083 < 7.908] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)E320.CB) [> 4.512 = 7.520 < 9.776] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)D422.CB) [> 4.629 = 7.715 < 10.029] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)G421.CA) [> 4.563 = 7.606 < 9.887] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E125.CB, (T0547)G150.CA) [> 3.721 = 6.201 < 8.062] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)S236.CB) [> 4.317 = 7.195 < 9.354] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I212.CB, (T0547)K264.CB) [> 3.758 = 6.264 < 8.143] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E343.CB, (T0547)D398.CB) [> 3.952 = 6.587 < 8.563] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)I537.CB) [> 3.692 = 6.153 < 7.999] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)E535.CB) [> 3.239 = 5.398 < 7.017] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)E535.CB) [> 4.413 = 7.355 < 9.561] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)K311.CB) [> 3.923 = 6.538 < 8.499] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)T559.CB) [> 4.174 = 6.957 < 9.045] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N373.CB, (T0547)D383.CB) [> 3.811 = 6.352 < 8.257] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)K286.CB) [> 4.640 = 7.733 < 10.053] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K267.CB, (T0547)R288.CB) [> 4.416 = 7.361 < 9.569] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)I551.CB) [> 3.138 = 5.231 < 6.800] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)I551.CB) [> 3.684 = 6.140 < 7.982] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)E552.CB) [> 3.509 = 5.849 < 7.604] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)Q433.CB) [> 3.336 = 5.559 < 7.227] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)L429.CB) [> 2.941 = 4.902 < 6.372] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)Y279.CB) [> 4.060 = 6.767 < 8.797] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)D393.CB) [> 4.489 = 7.482 < 9.726] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)L419.CB) [> 3.343 = 5.571 < 7.242] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)A431.CB) [> 3.876 = 6.459 < 8.397] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)A431.CB) [> 4.427 = 7.379 < 9.592] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)Y440.CB) [> 4.515 = 7.526 < 9.783] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)Y440.CB) [> 3.601 = 6.002 < 7.802] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)Y440.CB) [> 4.422 = 7.370 < 9.581] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)L420.CB) [> 4.020 = 6.700 < 8.710] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)M450.CB) [> 3.059 = 5.099 < 6.628] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)N443.CB) [> 3.823 = 6.371 < 8.283] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)A374.CB) [> 4.464 = 7.441 < 9.673] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N18.CB, (T0547)P91.CB) [> 3.661 = 6.101 < 7.931] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G19.CA, (T0547)P91.CB) [> 4.123 = 6.872 < 8.934] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G19.CA, (T0547)G92.CA) [> 4.441 = 7.401 < 9.622] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I23.CB, (T0547)D33.CB) [> 4.487 = 7.479 < 9.722] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)E438.CB) [> 4.097 = 6.829 < 8.878] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)L49.CB) [> 3.369 = 5.616 < 7.301] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)I551.CB) [> 4.033 = 6.721 < 8.738] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)K543.CB) [> 4.689 = 7.816 < 10.160] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L54.CB, (T0547)K415.CB) [> 4.659 = 7.766 < 10.095] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)F324.CB) [> 4.682 = 7.804 < 10.145] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)N328.CB) [> 4.681 = 7.801 < 10.142] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K57.CB, (T0547)N328.CB) [> 4.733 = 7.889 < 10.256] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K57.CB, (T0547)H329.CB) [> 4.649 = 7.749 < 10.073] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)K76.CB) [> 4.665 = 7.775 < 10.107] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)G78.CA) [> 4.689 = 7.815 < 10.160] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E60.CB, (T0547)K76.CB) [> 3.376 = 5.627 < 7.314] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)K76.CB) [> 4.342 = 7.237 < 9.408] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)V277.CB) [> 4.386 = 7.310 < 9.503] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)F79.CB) [> 4.512 = 7.519 < 9.775] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)L97.CB) [> 4.736 = 7.893 < 10.262] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)L234.CB) [> 3.923 = 6.538 < 8.499] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)N270.CB) [> 3.563 = 5.938 < 7.720] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)T413.CB) [> 4.595 = 7.659 < 9.957] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E535.CB, (T0547)G549.CA) [> 3.182 = 5.303 < 6.894] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A536.CB, (T0547)E548.CB) [> 2.595 = 4.324 < 5.622] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I537.CB, (T0547)E546.CB) [> 3.949 = 6.582 < 8.556] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)L313.CB) [> 4.557 = 7.594 < 9.873] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G101.CA, (T0547)G126.CA) [> 4.474 = 7.457 < 9.694] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N13.CB, (T0547)K57.CB) [> 4.310 = 7.183 < 9.338] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N13.CB, (T0547)K27.CB) [> 3.011 = 5.019 < 6.524] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)E12.CB, (T0547)K57.CB) [> 3.344 = 5.573 < 7.245] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G10.CA, (T0547)I412.CB) [> 4.692 = 7.821 < 10.167] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)K175.CB) [> 4.461 = 7.435 < 9.666] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)N141.CB, (T0547)K175.CB) [> 4.412 = 7.354 < 9.560] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)S403.CB) [> 4.581 = 7.635 < 9.926] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)D393.CB) [> 3.957 = 6.596 < 8.574] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)Y255.CB) [> 4.727 = 7.878 < 10.241] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I212.CB, (T0547)Y255.CB) [> 4.693 = 7.821 < 10.168] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L211.CB, (T0547)Y255.CB) [> 3.901 = 6.502 < 8.453] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)T209.CB, (T0547)I254.CB) [> 4.276 = 7.127 < 9.265] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)K543.CB) [> 3.565 = 5.942 < 7.725] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)D33.CB, (T0547)G544.CA) [> 4.620 = 7.700 < 10.010] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)D33.CB, (T0547)K543.CB) [> 2.315 = 3.859 < 5.016] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)D33.CB, (T0547)E542.CB) [> 4.053 = 6.755 < 8.781] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)G544.CA) [> 4.486 = 7.476 < 9.719] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)K543.CB) [> 4.289 = 7.149 < 9.294] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)A427.CB) [> 4.273 = 7.122 < 9.258] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)D33.CB, (T0547)L441.CB) [> 4.537 = 7.562 < 9.830] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)L411.CB) [> 4.107 = 6.846 < 8.899] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)H410.CB) [> 4.441 = 7.401 < 9.622] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)Y377.CB) [> 4.419 = 7.364 < 9.574] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)S287.CB) [> 4.628 = 7.713 < 10.026] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)A195.CB, (T0547)I238.CB) [> 4.403 = 7.339 < 9.541] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)A146.CB) [> 4.735 = 7.892 < 10.259] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G64.CA, (T0547)K76.CB) [> 3.879 = 6.465 < 8.404] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)L430.CB) [> 4.104 = 6.841 < 8.893] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)N373.CB) [> 4.129 = 6.882 < 8.947] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)Y106.CB) [> 4.729 = 7.882 < 10.247] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)L292.CB) [> 4.657 = 7.761 < 10.090] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)K415.CB) [> 4.525 = 7.542 < 9.805] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)G421.CA) [> 4.192 = 6.986 < 9.082] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)L420.CB) [> 3.297 = 5.496 < 7.144] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)A416.CB) [> 3.924 = 6.540 < 8.502] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)D422.CB) [> 4.383 = 7.304 < 9.496] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)K423.CB) [> 4.281 = 7.134 < 9.275] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)I369.CB) [> 4.337 = 7.229 < 9.398] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)D380.CB) [> 4.205 = 7.008 < 9.111] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)S280.CB, (T0547)S372.CB) [> 4.215 = 7.025 < 9.132] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)K414.CB) [> 4.106 = 6.843 < 8.895] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)Y290.CB) [> 3.712 = 6.187 < 8.043] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G150.CA, (T0547)E172.CB) [> 4.561 = 7.601 < 9.882] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)I145.CB, (T0547)E172.CB) [> 4.741 = 7.902 < 10.272] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)E172.CB) [> 4.765 = 7.941 < 10.324] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)I478.CB) [> 4.047 = 6.745 < 8.769] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)T409.CB) [> 4.355 = 7.258 < 9.435] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)I407.CB) [> 3.123 = 5.206 < 6.768] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)K283.CB, (T0547)I412.CB) [> 3.283 = 5.471 < 7.112] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)G205.CA) [> 4.497 = 7.495 < 9.743] w=0.040 to rejected_constraints # Constraint # added constraint: constraint((T0547)H151.CB, (T0547)P178.CB) [> 4.623 = 7.704 < 10.016] w=0.031 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)D316.CB) [> 3.918 = 6.530 < 8.489] w=0.029 to rejected_constraints # Constraint # added constraint: constraint((T0547)E115.CB, (T0547)I129.CB) [> 4.629 = 7.715 < 10.029] w=0.029 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y75.CB, (T0547)A296.CB) [> 4.694 = 7.823 < 10.169] w=0.029 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)A296.CB) [> 4.580 = 7.634 < 9.924] w=0.029 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)E294.CB) [> 4.050 = 6.750 < 8.775] w=0.029 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)D298.CB) [> 4.566 = 7.610 < 9.893] w=0.029 to rejected_constraints # Constraint # added constraint: constraint((T0547)E225.CB, (T0547)N265.CB) [> 4.063 = 6.772 < 8.804] w=0.028 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)E314.CB) [> 4.340 = 7.233 < 9.403] w=0.028 to rejected_constraints # Constraint # added constraint: constraint((T0547)T256.CB, (T0547)E314.CB) [> 4.604 = 7.673 < 9.975] w=0.028 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)D312.CB) [> 3.519 = 5.865 < 7.624] w=0.028 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)D312.CB) [> 3.876 = 6.459 < 8.397] w=0.028 to rejected_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)D312.CB) [> 4.280 = 7.133 < 9.272] w=0.028 to rejected_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)L223.CB) [> 4.572 = 7.619 < 9.905] w=0.028 to rejected_constraints # Constraint # added constraint: constraint((T0547)A147.CB, (T0547)L223.CB) [> 4.564 = 7.606 < 9.888] w=0.028 to rejected_constraints # Constraint # added constraint: constraint((T0547)A146.CB, (T0547)K175.CB) [> 4.580 = 7.633 < 9.923] w=0.028 to rejected_constraints # Constraint # added constraint: constraint((T0547)G198.CA, (T0547)F232.CB) [> 4.631 = 7.719 < 10.035] w=0.028 to rejected_constraints # Constraint # added constraint: constraint((T0547)G198.CA, (T0547)A247.CB) [> 4.566 = 7.611 < 9.894] w=0.028 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q281.CB, (T0547)T291.CB) [> 4.084 = 6.806 < 8.848] w=0.028 to rejected_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)S445.CB) [> 3.808 = 6.347 < 8.251] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)S445.CB) [> 2.569 = 4.281 < 5.566] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)S445.CB) [> 3.227 = 5.379 < 6.992] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)L446.CB) [> 2.478 = 4.130 < 5.369] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)S445.CB) [> 3.900 = 6.500 < 8.450] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I157.CB, (T0547)L224.CB) [> 4.090 = 6.816 < 8.861] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)D398.CB) [> 3.718 = 6.197 < 8.056] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)E308.CB) [> 4.054 = 6.757 < 8.785] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)Q424.CB) [> 4.418 = 7.364 < 9.573] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)N425.CB) [> 3.978 = 6.629 < 8.618] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)Q424.CB) [> 2.758 = 4.597 < 5.976] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)G421.CA) [> 3.711 = 6.185 < 8.041] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)N425.CB) [> 3.913 = 6.521 < 8.478] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)N425.CB) [> 2.833 = 4.721 < 6.138] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)N425.CB) [> 3.340 = 5.567 < 7.237] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)P451.CB) [> 3.917 = 6.528 < 8.487] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)P451.CB) [> 4.535 = 7.559 < 9.827] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)Q424.CB) [> 3.511 = 5.852 < 7.608] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)K423.CB) [> 4.216 = 7.027 < 9.136] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)Q424.CB) [> 4.533 = 7.555 < 9.821] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)Q424.CB) [> 4.119 = 6.865 < 8.925] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)P176.CB) [> 3.279 = 5.465 < 7.104] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)G395.CA) [> 4.626 = 7.710 < 10.023] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)S387.CB) [> 4.261 = 7.101 < 9.231] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)E386.CB) [> 4.196 = 6.994 < 9.092] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)H384.CB) [> 3.331 = 5.551 < 7.217] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)H384.CB) [> 3.306 = 5.511 < 7.164] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E314.CB, (T0547)N328.CB) [> 4.136 = 6.893 < 8.961] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A416.CB, (T0547)I432.CB) [> 2.968 = 4.947 < 6.431] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)Q433.CB) [> 3.521 = 5.868 < 7.629] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)I432.CB) [> 2.947 = 4.912 < 6.385] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)L429.CB) [> 2.708 = 4.514 < 5.868] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)A416.CB) [> 4.337 = 7.228 < 9.397] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)L419.CB) [> 3.756 = 6.261 < 8.139] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)A416.CB) [> 4.224 = 7.040 < 9.152] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I145.CB, (T0547)L224.CB) [> 4.529 = 7.548 < 9.812] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)N284.CB) [> 3.963 = 6.605 < 8.586] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)L446.CB) [> 3.661 = 6.102 < 7.932] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)E172.CB) [> 3.324 = 5.540 < 7.201] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)D168.CB) [> 4.591 = 7.652 < 9.947] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)A307.CB) [> 4.387 = 7.312 < 9.505] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)I306.CB) [> 4.629 = 7.715 < 10.029] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)A307.CB) [> 3.165 = 5.274 < 6.857] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)I306.CB) [> 3.719 = 6.199 < 8.058] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)I306.CB) [> 3.592 = 5.987 < 7.783] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)N284.CB) [> 4.208 = 7.014 < 9.118] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)F282.CB) [> 4.112 = 6.854 < 8.910] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)K310.CB) [> 4.259 = 7.098 < 9.227] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L117.CB, (T0547)N141.CB) [> 4.422 = 7.369 < 9.580] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S445.CB, (T0547)Y545.CB) [> 4.156 = 6.927 < 9.005] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)I550.CB) [> 4.319 = 7.198 < 9.357] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)G549.CA) [> 4.029 = 6.716 < 8.730] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)Q400.CB) [> 3.716 = 6.194 < 8.052] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)N404.CB) [> 4.574 = 7.624 < 9.911] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)K310.CB) [> 4.014 = 6.689 < 8.696] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)I432.CB) [> 4.524 = 7.541 < 9.803] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)E406.CB) [> 4.788 = 7.980 < 10.375] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)T534.CB) [> 4.324 = 7.207 < 9.369] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)Y440.CB) [> 4.176 = 6.961 < 9.049] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)K311.CB) [> 4.274 = 7.123 < 9.259] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)F204.CB) [> 4.250 = 7.084 < 9.209] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)T559.CB) [> 4.085 = 6.809 < 8.851] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)I537.CB) [> 3.769 = 6.281 < 8.166] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)L420.CB) [> 3.810 = 6.350 < 8.255] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)A431.CB) [> 4.743 = 7.905 < 10.277] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E308.CB, (T0547)F324.CB) [> 3.876 = 6.460 < 8.397] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A307.CB, (T0547)F324.CB) [> 4.149 = 6.915 < 8.990] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A307.CB, (T0547)S321.CB) [> 3.329 = 5.549 < 7.214] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A307.CB, (T0547)F318.CB) [> 3.020 = 5.032 < 6.542] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K304.CB, (T0547)V325.CB) [> 4.638 = 7.730 < 10.048] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K304.CB, (T0547)R323.CB) [> 2.846 = 4.743 < 6.166] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K304.CB, (T0547)G322.CA) [> 3.197 = 5.328 < 6.926] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K304.CB, (T0547)S321.CB) [> 2.941 = 4.901 < 6.372] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)Q309.CB) [> 3.289 = 5.481 < 7.125] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)I306.CB) [> 3.327 = 5.545 < 7.209] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)N305.CB) [> 2.447 = 4.078 < 5.301] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)K310.CB) [> 4.716 = 7.861 < 10.219] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)N305.CB) [> 4.586 = 7.643 < 9.936] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)Q433.CB) [> 3.240 = 5.401 < 7.021] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)A307.CB) [> 3.578 = 5.963 < 7.752] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)N373.CB) [> 3.007 = 5.012 < 6.516] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)E376.CB) [> 3.295 = 5.491 < 7.138] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)Q554.CB) [> 4.357 = 7.262 < 9.441] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)T409.CB) [> 4.661 = 7.769 < 10.099] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G143.CA, (T0547)E172.CB) [> 3.869 = 6.449 < 8.384] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S539.CB, (T0547)T559.CB) [> 3.639 = 6.064 < 7.883] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S539.CB, (T0547)I556.CB) [> 3.370 = 5.617 < 7.302] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S539.CB, (T0547)S555.CB) [> 3.598 = 5.997 < 7.796] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E505.CB, (T0547)T534.CB) [> 3.873 = 6.455 < 8.392] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N425.CB, (T0547)S477.CB) [> 4.222 = 7.036 < 9.147] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)D364.CB) [> 4.770 = 7.950 < 10.335] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P461.CB, (T0547)E552.CB) [> 3.234 = 5.390 < 7.006] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)Y440.CB) [> 3.370 = 5.616 < 7.301] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)I432.CB) [> 4.061 = 6.769 < 8.800] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)F392.CB) [> 4.474 = 7.457 < 9.694] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)L456.CB) [> 2.314 = 3.857 < 5.014] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)G455.CA) [> 2.903 = 4.838 < 6.289] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)W454.CB) [> 4.042 = 6.736 < 8.757] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K76.CB, (T0547)D312.CB) [> 4.078 = 6.797 < 8.836] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K76.CB, (T0547)K311.CB) [> 3.886 = 6.476 < 8.419] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S403.CB, (T0547)F444.CB) [> 4.486 = 7.477 < 9.721] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)V442.CB) [> 4.263 = 7.106 < 9.237] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)D383.CB) [> 3.762 = 6.270 < 8.151] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)I540.CB) [> 4.317 = 7.195 < 9.354] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)N541.CB) [> 4.446 = 7.411 < 9.634] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)I540.CB) [> 2.549 = 4.249 < 5.523] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)E314.CB) [> 4.708 = 7.847 < 10.202] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)K311.CB) [> 4.497 = 7.494 < 9.743] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)T482.CB) [> 3.689 = 6.149 < 7.993] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)I551.CB) [> 3.065 = 5.109 < 6.642] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)I550.CB) [> 3.255 = 5.426 < 7.054] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R137.CB, (T0547)L163.CB) [> 4.618 = 7.697 < 10.007] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S555.CB, (T0547)I567.CB) [> 4.572 = 7.620 < 9.906] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)Y440.CB) [> 4.534 = 7.557 < 9.824] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)K286.CB) [> 4.133 = 6.889 < 8.956] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)K286.CB) [> 3.947 = 6.578 < 8.552] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)Y440.CB) [> 3.373 = 5.622 < 7.309] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)S445.CB) [> 4.592 = 7.654 < 9.950] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N425.CB, (T0547)L563.CB) [> 3.914 = 6.523 < 8.480] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N425.CB, (T0547)D562.CB) [> 3.844 = 6.406 < 8.328] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)L420.CB) [> 4.395 = 7.324 < 9.522] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)E386.CB) [> 4.181 = 6.968 < 9.058] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)K286.CB) [> 3.494 = 5.824 < 7.571] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)F282.CB) [> 4.119 = 6.865 < 8.925] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)F447.CB) [> 4.081 = 6.802 < 8.842] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)T482.CB) [> 4.384 = 7.306 < 9.498] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S403.CB, (T0547)D480.CB) [> 4.593 = 7.655 < 9.952] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)I417.CB) [> 4.029 = 6.715 < 8.730] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)I417.CB) [> 3.707 = 6.178 < 8.031] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)D503.CB) [> 3.615 = 6.026 < 7.834] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)E505.CB) [> 3.509 = 5.849 < 7.603] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)D503.CB) [> 3.931 = 6.552 < 8.518] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)E505.CB) [> 4.053 = 6.756 < 8.783] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)I540.CB) [> 4.447 = 7.412 < 9.636] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)K414.CB) [> 4.500 = 7.501 < 9.751] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)I254.CB) [> 3.757 = 6.262 < 8.141] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)L258.CB) [> 4.127 = 6.878 < 8.941] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)Y255.CB) [> 2.859 = 4.766 < 6.195] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)I254.CB) [> 2.670 = 4.450 < 5.785] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)G252.CA) [> 3.855 = 6.425 < 8.353] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A146.CB, (T0547)N179.CB) [> 4.623 = 7.705 < 10.017] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)N179.CB) [> 4.655 = 7.759 < 10.086] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V94.CB, (T0547)N105.CB) [> 4.496 = 7.494 < 9.742] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)K267.CB) [> 4.655 = 7.758 < 10.086] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E60.CB, (T0547)K102.CB) [> 3.295 = 5.492 < 7.139] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)K102.CB) [> 2.845 = 4.742 < 6.165] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)Q448.CB) [> 3.623 = 6.038 < 7.849] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)K311.CB) [> 4.317 = 7.194 < 9.353] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)H151.CB) [> 4.524 = 7.541 < 9.803] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)K310.CB) [> 4.622 = 7.703 < 10.014] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)D562.CB) [> 4.403 = 7.338 < 9.540] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)D562.CB) [> 2.188 = 3.647 < 4.741] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)T559.CB) [> 3.937 = 6.561 < 8.529] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)E294.CB) [> 2.524 = 4.207 < 5.468] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)A334.CB) [> 4.064 = 6.773 < 8.805] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)K311.CB) [> 4.376 = 7.293 < 9.481] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)L563.CB) [> 3.546 = 5.910 < 7.683] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A327.CB, (T0547)I556.CB) [> 4.339 = 7.231 < 9.401] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N221.CB, (T0547)L266.CB) [> 4.237 = 7.061 < 9.180] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N221.CB, (T0547)K264.CB) [> 2.876 = 4.794 < 6.232] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)V325.CB) [> 4.684 = 7.807 < 10.149] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)G395.CA) [> 3.685 = 6.142 < 7.985] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)L385.CB) [> 3.810 = 6.351 < 8.256] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)T413.CB) [> 3.262 = 5.436 < 7.067] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)I412.CB) [> 4.100 = 6.834 < 8.884] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P315.CB, (T0547)N328.CB) [> 4.087 = 6.812 < 8.855] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)K310.CB) [> 4.155 = 6.926 < 9.003] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)I153.CB) [> 3.884 = 6.474 < 8.416] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L394.CB, (T0547)L408.CB) [> 4.651 = 7.752 < 10.078] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)Y396.CB) [> 4.249 = 7.082 < 9.207] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)L391.CB) [> 4.735 = 7.892 < 10.260] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)K310.CB) [> 3.134 = 5.223 < 6.790] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)A374.CB) [> 4.029 = 6.715 < 8.730] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)F318.CB) [> 2.982 = 4.969 < 6.460] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G274.CA, (T0547)F318.CB) [> 4.545 = 7.575 < 9.848] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I432.CB, (T0547)I556.CB) [> 4.389 = 7.314 < 9.509] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)I556.CB) [> 3.065 = 5.108 < 6.640] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)I556.CB) [> 2.487 = 4.145 < 5.388] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)A427.CB) [> 4.146 = 6.910 < 8.983] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)A427.CB) [> 2.685 = 4.474 < 5.817] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)A427.CB) [> 3.698 = 6.164 < 8.013] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)A427.CB) [> 3.484 = 5.807 < 7.549] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)V436.CB) [> 2.996 = 4.994 < 6.492] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)E435.CB) [> 4.615 = 7.691 < 9.999] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)V436.CB) [> 3.059 = 5.098 < 6.627] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)S539.CB) [> 4.214 = 7.023 < 9.130] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)Q554.CB) [> 4.642 = 7.736 < 10.057] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)Q554.CB) [> 3.779 = 6.298 < 8.188] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)E552.CB) [> 1.627 = 2.712 < 3.526] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)I551.CB) [> 2.959 = 4.932 < 6.412] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)E552.CB) [> 4.612 = 7.687 < 9.993] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)Y545.CB) [> 3.279 = 5.465 < 7.104] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)E535.CB) [> 4.151 = 6.918 < 8.993] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)Y545.CB) [> 2.725 = 4.542 < 5.905] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)Y545.CB) [> 3.948 = 6.580 < 8.555] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)E314.CB) [> 4.661 = 7.769 < 10.100] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)F232.CB) [> 4.209 = 7.016 < 9.120] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)F227.CB) [> 4.370 = 7.283 < 9.467] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)K352.CB) [> 3.436 = 5.727 < 7.445] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)K310.CB) [> 3.959 = 6.598 < 8.577] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E435.CB, (T0547)V547.CB) [> 4.181 = 6.968 < 9.058] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E435.CB, (T0547)E546.CB) [> 3.711 = 6.185 < 8.041] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E435.CB, (T0547)Y545.CB) [> 3.720 = 6.201 < 8.061] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D434.CB, (T0547)V547.CB) [> 3.996 = 6.660 < 8.658] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D434.CB, (T0547)I538.CB) [> 3.342 = 5.570 < 7.241] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I432.CB, (T0547)D562.CB) [> 3.147 = 5.244 < 6.818] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)D562.CB) [> 4.394 = 7.323 < 9.520] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)D562.CB) [> 3.670 = 6.116 < 7.951] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)D434.CB) [> 4.463 = 7.438 < 9.669] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)V436.CB) [> 4.190 = 6.983 < 9.078] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)E435.CB) [> 4.441 = 7.401 < 9.622] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)V436.CB) [> 4.451 = 7.419 < 9.644] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)A247.CB) [> 4.559 = 7.599 < 9.878] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)T413.CB) [> 3.143 = 5.238 < 6.810] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R402.CB, (T0547)F447.CB) [> 3.463 = 5.772 < 7.504] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R402.CB, (T0547)L446.CB) [> 2.719 = 4.531 < 5.891] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)L446.CB) [> 4.381 = 7.302 < 9.493] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)R402.CB) [> 3.659 = 6.098 < 7.927] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)I537.CB) [> 3.112 = 5.187 < 6.743] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)Q554.CB) [> 2.769 = 4.615 < 5.999] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)T559.CB) [> 3.252 = 5.420 < 7.046] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)D558.CB) [> 4.352 = 7.254 < 9.430] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)I556.CB) [> 2.556 = 4.260 < 5.539] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)S555.CB) [> 3.138 = 5.230 < 6.799] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)Q554.CB) [> 2.978 = 4.963 < 6.451] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L399.CB, (T0547)L446.CB) [> 4.156 = 6.927 < 9.004] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L303.CB, (T0547)F324.CB) [> 3.763 = 6.272 < 8.153] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L303.CB, (T0547)S321.CB) [> 3.974 = 6.623 < 8.610] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)K283.CB) [> 4.075 = 6.791 < 8.829] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)L303.CB) [> 3.696 = 6.159 < 8.007] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)L303.CB) [> 4.003 = 6.672 < 8.673] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)F232.CB) [> 4.457 = 7.429 < 9.657] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)L385.CB) [> 4.542 = 7.570 < 9.841] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)E542.CB) [> 3.687 = 6.146 < 7.989] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)N541.CB) [> 4.534 = 7.556 < 9.823] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)E542.CB) [> 4.208 = 7.013 < 9.117] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)E542.CB) [> 4.124 = 6.873 < 8.935] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)K283.CB) [> 3.997 = 6.662 < 8.661] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)T559.CB) [> 4.195 = 6.992 < 9.090] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)D558.CB) [> 3.130 = 5.217 < 6.782] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)T534.CB) [> 4.478 = 7.464 < 9.703] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)Q400.CB) [> 4.641 = 7.736 < 10.056] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)I407.CB) [> 4.722 = 7.871 < 10.232] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P335.CB, (T0547)K543.CB) [> 3.905 = 6.509 < 8.462] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)I306.CB) [> 3.543 = 5.906 < 7.677] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)V397.CB) [> 4.251 = 7.085 < 9.211] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)S381.CB) [> 3.777 = 6.295 < 8.184] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)Q554.CB) [> 4.215 = 7.025 < 9.133] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y290.CB, (T0547)I319.CB) [> 3.830 = 6.383 < 8.297] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y290.CB, (T0547)F318.CB) [> 2.864 = 4.773 < 6.204] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y290.CB, (T0547)E314.CB) [> 4.100 = 6.833 < 8.883] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)P315.CB) [> 3.480 = 5.800 < 7.540] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)L303.CB) [> 3.909 = 6.516 < 8.470] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)D298.CB) [> 4.733 = 7.888 < 10.254] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)Y290.CB) [> 4.680 = 7.800 < 10.141] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F232.CB, (T0547)L244.CB) [> 3.929 = 6.549 < 8.513] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)N265.CB) [> 3.933 = 6.555 < 8.522] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G133.CA, (T0547)K203.CB) [> 4.633 = 7.722 < 10.038] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)A307.CB) [> 4.092 = 6.820 < 8.866] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)V299.CB) [> 3.973 = 6.621 < 8.608] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)K304.CB) [> 3.349 = 5.581 < 7.256] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)T559.CB) [> 4.377 = 7.295 < 9.484] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K286.CB, (T0547)P315.CB) [> 2.851 = 4.751 < 6.176] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)A146.CB) [> 4.149 = 6.915 < 8.989] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)K304.CB) [> 4.624 = 7.707 < 10.019] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N425.CB, (T0547)F447.CB) [> 3.431 = 5.718 < 7.433] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N425.CB, (T0547)L446.CB) [> 4.024 = 6.706 < 8.718] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K423.CB, (T0547)D564.CB) [> 4.166 = 6.943 < 9.025] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q400.CB, (T0547)N425.CB) [> 4.575 = 7.625 < 9.913] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)E548.CB) [> 2.272 = 3.786 < 4.922] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)V547.CB) [> 3.684 = 6.141 < 7.983] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)E548.CB) [> 3.996 = 6.661 < 8.659] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)D562.CB) [> 4.284 = 7.140 < 9.282] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)D562.CB) [> 3.132 = 5.220 < 6.787] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)T559.CB) [> 4.115 = 6.858 < 8.915] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)A536.CB) [> 4.640 = 7.733 < 10.053] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)D562.CB) [> 3.008 = 5.013 < 6.516] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)L563.CB) [> 3.127 = 5.211 < 6.775] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)D562.CB) [> 3.136 = 5.226 < 6.794] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A416.CB, (T0547)A427.CB) [> 3.727 = 6.212 < 8.075] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)N541.CB) [> 3.218 = 5.363 < 6.972] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L97.CB, (T0547)G126.CA) [> 4.775 = 7.958 < 10.346] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)Q89.CB) [> 4.403 = 7.339 < 9.540] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)T534.CB) [> 3.414 = 5.691 < 7.398] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)D398.CB) [> 4.656 = 7.759 < 10.087] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)L563.CB) [> 3.404 = 5.674 < 7.376] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)D562.CB) [> 3.970 = 6.617 < 8.602] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)T559.CB) [> 4.417 = 7.362 < 9.571] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)D564.CB) [> 4.008 = 6.680 < 8.683] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)L563.CB) [> 2.931 = 4.886 < 6.352] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)G549.CA) [> 2.890 = 4.817 < 6.262] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)A431.CB) [> 4.078 = 6.797 < 8.836] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)G549.CA) [> 4.526 = 7.543 < 9.806] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)K423.CB) [> 3.659 = 6.099 < 7.929] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)K423.CB) [> 3.918 = 6.529 < 8.488] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)Q424.CB) [> 2.873 = 4.789 < 6.225] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)P426.CB) [> 4.228 = 7.047 < 9.162] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)Q424.CB) [> 3.571 = 5.952 < 7.737] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F340.CB, (T0547)H410.CB) [> 4.748 = 7.913 < 10.287] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)M261.CB) [> 3.586 = 5.977 < 7.770] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)K286.CB) [> 4.244 = 7.073 < 9.195] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)Y396.CB) [> 4.586 = 7.643 < 9.936] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)L275.CB) [> 4.475 = 7.459 < 9.696] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)L313.CB) [> 4.252 = 7.087 < 9.213] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)E548.CB) [> 3.634 = 6.057 < 7.874] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)L313.CB) [> 4.682 = 7.804 < 10.145] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)R288.CB) [> 3.994 = 6.656 < 8.653] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)A427.CB) [> 3.838 = 6.396 < 8.315] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)Y545.CB) [> 4.284 = 7.140 < 9.282] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)I540.CB) [> 4.258 = 7.096 < 9.225] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)I538.CB) [> 4.320 = 7.200 < 9.360] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)S445.CB) [> 4.271 = 7.118 < 9.253] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)K414.CB) [> 4.731 = 7.885 < 10.250] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)I538.CB) [> 4.265 = 7.109 < 9.241] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)S445.CB) [> 3.352 = 5.587 < 7.263] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)L446.CB) [> 3.588 = 5.980 < 7.774] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)L420.CB) [> 4.454 = 7.424 < 9.651] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)A553.CB) [> 3.896 = 6.494 < 8.442] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)L418.CB) [> 3.665 = 6.108 < 7.940] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)N152.CB) [> 4.744 = 7.907 < 10.280] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)A127.CB) [> 4.726 = 7.876 < 10.239] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K76.CB, (T0547)A307.CB) [> 4.682 = 7.803 < 10.143] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K76.CB, (T0547)K304.CB) [> 3.408 = 5.680 < 7.384] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K76.CB, (T0547)L303.CB) [> 3.111 = 5.186 < 6.741] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K76.CB, (T0547)F301.CB) [> 4.741 = 7.901 < 10.272] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K76.CB, (T0547)V299.CB) [> 4.603 = 7.671 < 9.972] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y75.CB, (T0547)F324.CB) [> 4.747 = 7.912 < 10.286] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y75.CB, (T0547)S321.CB) [> 4.114 = 6.856 < 8.913] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y75.CB, (T0547)I319.CB) [> 3.607 = 6.011 < 7.815] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y75.CB, (T0547)L292.CB) [> 3.372 = 5.620 < 7.306] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)L244.CB) [> 4.653 = 7.754 < 10.081] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)Q237.CB) [> 3.369 = 5.616 < 7.301] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)S202.CB) [> 3.394 = 5.656 < 7.353] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)N201.CB) [> 4.349 = 7.248 < 9.422] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)Q237.CB) [> 3.689 = 6.148 < 7.992] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N179.CB, (T0547)N265.CB) [> 4.280 = 7.134 < 9.274] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N179.CB, (T0547)L223.CB) [> 4.606 = 7.676 < 9.979] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K175.CB, (T0547)Q226.CB) [> 4.633 = 7.721 < 10.038] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K175.CB, (T0547)K222.CB) [> 3.257 = 5.428 < 7.056] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K175.CB, (T0547)N221.CB) [> 3.959 = 6.598 < 8.578] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G150.CA, (T0547)K177.CB) [> 3.856 = 6.427 < 8.355] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E148.CB, (T0547)P178.CB) [> 4.497 = 7.496 < 9.744] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A147.CB, (T0547)E172.CB) [> 4.781 = 7.968 < 10.358] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E138.CB, (T0547)E172.CB) [> 4.608 = 7.680 < 9.984] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R137.CB, (T0547)D168.CB) [> 4.657 = 7.762 < 10.090] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D136.CB, (T0547)I157.CB) [> 4.710 = 7.850 < 10.205] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)G159.CA) [> 4.720 = 7.867 < 10.227] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L117.CB, (T0547)I145.CB) [> 4.557 = 7.595 < 9.874] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S112.CB, (T0547)D136.CB) [> 4.746 = 7.909 < 10.282] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A110.CB, (T0547)A146.CB) [> 4.469 = 7.449 < 9.683] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A110.CB, (T0547)F144.CB) [> 4.464 = 7.440 < 9.673] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N96.CB, (T0547)S539.CB) [> 4.754 = 7.923 < 10.300] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N96.CB, (T0547)E435.CB) [> 4.745 = 7.908 < 10.281] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)Q448.CB) [> 3.818 = 6.363 < 8.272] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)L429.CB) [> 4.619 = 7.698 < 10.007] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)A405.CB) [> 4.149 = 6.915 < 8.990] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)L351.CB) [> 4.424 = 7.374 < 9.586] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)S539.CB) [> 4.091 = 6.818 < 8.863] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)E535.CB) [> 3.483 = 5.806 < 7.547] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)I537.CB) [> 3.897 = 6.496 < 8.444] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)V442.CB) [> 3.922 = 6.537 < 8.499] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L38.CB, (T0547)S477.CB) [> 4.322 = 7.203 < 9.363] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E37.CB, (T0547)I333.CB) [> 4.727 = 7.878 < 10.241] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)L47.CB) [> 4.560 = 7.599 < 9.879] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)Y440.CB) [> 4.707 = 7.845 < 10.198] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)R439.CB) [> 3.655 = 6.092 < 7.919] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D33.CB, (T0547)I540.CB) [> 4.752 = 7.920 < 10.296] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D33.CB, (T0547)R439.CB) [> 2.387 = 3.978 < 5.172] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D33.CB, (T0547)E438.CB) [> 3.809 = 6.349 < 8.253] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D33.CB, (T0547)V436.CB) [> 4.737 = 7.895 < 10.264] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D33.CB, (T0547)N373.CB) [> 3.958 = 6.597 < 8.577] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D33.CB, (T0547)S372.CB) [> 4.134 = 6.890 < 8.957] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D33.CB, (T0547)K370.CB) [> 4.783 = 7.971 < 10.363] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)R439.CB) [> 4.333 = 7.222 < 9.388] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)L49.CB) [> 4.739 = 7.898 < 10.268] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)H329.CB) [> 4.652 = 7.753 < 10.080] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A30.CB, (T0547)L441.CB) [> 4.522 = 7.537 < 9.798] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A30.CB, (T0547)E438.CB) [> 4.358 = 7.264 < 9.443] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A30.CB, (T0547)E435.CB) [> 4.139 = 6.898 < 8.968] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)V300.CB) [> 3.421 = 5.702 < 7.412] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)K76.CB) [> 4.796 = 7.994 < 10.392] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)S287.CB) [> 4.185 = 6.974 < 9.067] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)Y75.CB) [> 3.169 = 5.282 < 6.867] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E60.CB, (T0547)Y75.CB) [> 4.473 = 7.454 < 9.691] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I59.CB, (T0547)Y75.CB) [> 3.807 = 6.345 < 8.249] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)Y75.CB) [> 4.456 = 7.427 < 9.656] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)E438.CB) [> 4.540 = 7.567 < 9.838] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)I540.CB) [> 4.311 = 7.184 < 9.340] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)N541.CB) [> 4.134 = 6.890 < 8.957] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)N541.CB) [> 3.302 = 5.503 < 7.154] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)S477.CB) [> 4.077 = 6.794 < 8.833] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)L446.CB) [> 4.582 = 7.637 < 9.928] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)L358.CB) [> 4.255 = 7.091 < 9.219] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)F447.CB) [> 4.544 = 7.573 < 9.845] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)E535.CB) [> 4.246 = 7.076 < 9.199] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)E535.CB) [> 4.089 = 6.816 < 8.860] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)I417.CB) [> 4.662 = 7.769 < 10.100] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)D398.CB) [> 2.816 = 4.693 < 6.101] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)F392.CB) [> 4.586 = 7.644 < 9.937] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)L389.CB) [> 4.713 = 7.855 < 10.211] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)E386.CB) [> 4.681 = 7.801 < 10.142] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)S387.CB) [> 4.552 = 7.587 < 9.863] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)H384.CB) [> 4.765 = 7.941 < 10.323] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)I369.CB) [> 3.878 = 6.464 < 8.403] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)S381.CB) [> 4.776 = 7.960 < 10.348] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)Q400.CB) [> 4.678 = 7.797 < 10.137] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)L399.CB) [> 4.252 = 7.086 < 9.212] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)I382.CB) [> 4.415 = 7.358 < 9.566] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)L385.CB) [> 4.609 = 7.682 < 9.987] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)I382.CB) [> 4.668 = 7.780 < 10.113] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)H384.CB) [> 4.774 = 7.957 < 10.344] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)L358.CB) [> 4.547 = 7.578 < 9.852] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)P371.CB) [> 4.555 = 7.592 < 9.870] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)I369.CB) [> 3.623 = 6.038 < 7.850] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I306.CB, (T0547)I317.CB) [> 3.160 = 5.267 < 6.847] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V300.CB, (T0547)K311.CB) [> 4.063 = 6.771 < 8.802] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R288.CB, (T0547)F324.CB) [> 4.214 = 7.024 < 9.131] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I540.CB, (T0547)I551.CB) [> 3.705 = 6.174 < 8.026] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I540.CB, (T0547)I550.CB) [> 4.248 = 7.080 < 9.204] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I540.CB, (T0547)G549.CA) [> 2.758 = 4.597 < 5.976] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I538.CB, (T0547)I551.CB) [> 2.702 = 4.503 < 5.854] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E435.CB, (T0547)S445.CB) [> 3.316 = 5.527 < 7.184] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D434.CB, (T0547)L446.CB) [> 3.393 = 5.656 < 7.352] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)L446.CB) [> 2.932 = 4.887 < 6.353] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I432.CB, (T0547)Q448.CB) [> 3.424 = 5.707 < 7.419] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)S449.CB) [> 2.465 = 4.108 < 5.341] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)M450.CB) [> 3.853 = 6.421 < 8.347] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q424.CB, (T0547)S449.CB) [> 4.320 = 7.201 < 9.361] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)L446.CB) [> 4.471 = 7.451 < 9.686] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)V397.CB) [> 4.456 = 7.426 < 9.654] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)D398.CB) [> 2.699 = 4.499 < 5.848] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)I407.CB) [> 4.366 = 7.276 < 9.459] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)L408.CB) [> 4.260 = 7.100 < 9.230] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)S403.CB) [> 4.169 = 6.949 < 9.034] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)Q400.CB) [> 3.241 = 5.402 < 7.023] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)T413.CB) [> 3.632 = 6.054 < 7.870] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)I412.CB) [> 3.593 = 5.988 < 7.784] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)H384.CB) [> 4.520 = 7.534 < 9.794] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)Y396.CB) [> 3.959 = 6.598 < 8.577] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)Y290.CB) [> 4.721 = 7.869 < 10.230] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)K286.CB) [> 4.486 = 7.477 < 9.720] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)I417.CB) [> 4.682 = 7.804 < 10.145] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)A416.CB) [> 4.760 = 7.934 < 10.314] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)K367.CB) [> 4.728 = 7.881 < 10.245] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G235.CA, (T0547)V277.CB) [> 3.540 = 5.900 < 7.670] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)Y295.CB) [> 3.923 = 6.538 < 8.499] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)K264.CB) [> 4.368 = 7.280 < 9.465] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)A263.CB) [> 4.639 = 7.731 < 10.050] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E225.CB, (T0547)A263.CB) [> 4.439 = 7.398 < 9.617] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G199.CA, (T0547)S236.CB) [> 4.087 = 6.811 < 8.854] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G198.CA, (T0547)Q237.CB) [> 3.180 = 5.300 < 6.890] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G198.CA, (T0547)S236.CB) [> 2.764 = 4.606 < 5.988] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A195.CB, (T0547)Q237.CB) [> 3.546 = 5.909 < 7.682] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)D364.CB) [> 4.647 = 7.745 < 10.068] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)Y363.CB) [> 3.178 = 5.297 < 6.886] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)Q237.CB) [> 4.007 = 6.678 < 8.682] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)S236.CB) [> 4.676 = 7.793 < 10.131] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)A276.CB) [> 3.547 = 5.912 < 7.686] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)G274.CA) [> 4.245 = 7.075 < 9.197] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)I200.CB) [> 4.470 = 7.450 < 9.685] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K286.CB, (T0547)N297.CB) [> 3.036 = 5.060 < 6.578] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N284.CB, (T0547)F324.CB) [> 4.483 = 7.471 < 9.713] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N284.CB, (T0547)E294.CB) [> 3.154 = 5.256 < 6.833] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K283.CB, (T0547)Y295.CB) [> 4.610 = 7.683 < 9.988] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S280.CB, (T0547)K370.CB) [> 3.897 = 6.495 < 8.444] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y279.CB, (T0547)S372.CB) [> 4.048 = 6.746 < 8.770] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y279.CB, (T0547)P371.CB) [> 3.688 = 6.146 < 7.990] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y279.CB, (T0547)K370.CB) [> 3.515 = 5.858 < 7.615] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E278.CB, (T0547)L411.CB) [> 4.715 = 7.858 < 10.215] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)A296.CB) [> 3.732 = 6.220 < 8.086] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)Y295.CB) [> 3.448 = 5.747 < 7.471] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)E294.CB) [> 3.749 = 6.248 < 8.123] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)R293.CB) [> 3.924 = 6.540 < 8.502] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)R288.CB) [> 4.564 = 7.607 < 9.889] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)E320.CB) [> 4.511 = 7.518 < 9.774] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G274.CA, (T0547)A296.CB) [> 3.644 = 6.074 < 7.896] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G274.CA, (T0547)Y295.CB) [> 3.447 = 5.745 < 7.468] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)V299.CB) [> 4.166 = 6.943 < 9.026] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R259.CB, (T0547)A268.CB) [> 4.024 = 6.707 < 8.719] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L258.CB, (T0547)A268.CB) [> 4.302 = 7.171 < 9.322] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)N270.CB) [> 4.075 = 6.792 < 8.830] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)L303.CB) [> 4.785 = 7.974 < 10.366] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)V277.CB) [> 3.368 = 5.614 < 7.298] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E240.CB, (T0547)E285.CB) [> 4.410 = 7.349 < 9.554] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E240.CB, (T0547)N284.CB) [> 4.754 = 7.923 < 10.299] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)I481.CB) [> 3.763 = 6.272 < 8.153] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D40.CB, (T0547)L49.CB) [> 3.456 = 5.760 < 7.488] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)H384.CB) [> 4.283 = 7.139 < 9.280] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)L313.CB) [> 3.891 = 6.485 < 8.431] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)D398.CB) [> 4.300 = 7.166 < 9.316] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)F232.CB) [> 4.710 = 7.849 < 10.204] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L139.CB, (T0547)I169.CB) [> 3.741 = 6.235 < 8.106] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)K414.CB) [> 2.914 = 4.857 < 6.314] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)L418.CB) [> 4.713 = 7.855 < 10.211] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)K415.CB) [> 2.846 = 4.744 < 6.167] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)K414.CB) [> 3.819 = 6.365 < 8.275] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E294.CB, (T0547)E314.CB) [> 4.219 = 7.032 < 9.141] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)R293.CB) [> 4.790 = 7.984 < 10.379] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E213.CB, (T0547)M261.CB) [> 4.603 = 7.672 < 9.973] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I180.CB, (T0547)V215.CB) [> 4.525 = 7.542 < 9.804] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A170.CB, (T0547)L218.CB) [> 4.728 = 7.880 < 10.244] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I167.CB, (T0547)A214.CB) [> 4.649 = 7.748 < 10.073] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L163.CB, (T0547)V215.CB) [> 4.479 = 7.466 < 9.705] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L163.CB, (T0547)L211.CB) [> 4.041 = 6.736 < 8.756] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L160.CB, (T0547)L211.CB) [> 3.585 = 5.976 < 7.768] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G159.CA, (T0547)L211.CB) [> 4.299 = 7.165 < 9.315] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L54.CB, (T0547)T413.CB) [> 4.104 = 6.840 < 8.892] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E535.CB, (T0547)I550.CB) [> 3.147 = 5.245 < 6.819] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E535.CB, (T0547)E548.CB) [> 3.993 = 6.656 < 8.653] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E535.CB, (T0547)V547.CB) [> 3.659 = 6.098 < 7.927] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)K414.CB) [> 3.172 = 5.287 < 6.873] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)I412.CB) [> 3.806 = 6.343 < 8.246] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)A307.CB) [> 3.954 = 6.591 < 8.568] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)I306.CB) [> 3.773 = 6.288 < 8.174] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)A247.CB) [> 3.010 = 5.016 < 6.521] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)E314.CB) [> 4.377 = 7.295 < 9.484] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)Q237.CB) [> 4.518 = 7.529 < 9.788] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A214.CB, (T0547)I254.CB) [> 3.671 = 6.119 < 7.955] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T209.CB, (T0547)N253.CB) [> 4.392 = 7.321 < 9.517] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S208.CB, (T0547)G252.CA) [> 4.446 = 7.411 < 9.634] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L206.CB, (T0547)L217.CB) [> 4.411 = 7.352 < 9.557] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K203.CB, (T0547)G235.CA) [> 4.527 = 7.544 < 9.807] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R183.CB, (T0547)K203.CB) [> 4.542 = 7.570 < 9.841] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)N221.CB) [> 4.659 = 7.765 < 10.095] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)L217.CB) [> 3.498 = 5.831 < 7.580] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A170.CB, (T0547)Q226.CB) [> 3.971 = 6.618 < 8.603] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I167.CB, (T0547)Q226.CB) [> 4.453 = 7.422 < 9.649] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I166.CB, (T0547)Q226.CB) [> 3.565 = 5.942 < 7.725] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L160.CB, (T0547)E220.CB) [> 4.135 = 6.892 < 8.960] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)L217.CB) [> 4.742 = 7.903 < 10.273] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I157.CB, (T0547)L217.CB) [> 4.386 = 7.311 < 9.504] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)G205.CA) [> 4.629 = 7.715 < 10.029] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)E162.CB) [> 4.173 = 6.956 < 9.042] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)I157.CB) [> 3.533 = 5.888 < 7.654] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N105.CB, (T0547)N124.CB) [> 4.550 = 7.583 < 9.858] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y104.CB, (T0547)N124.CB) [> 3.095 = 5.158 < 6.706] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y104.CB, (T0547)N123.CB) [> 2.766 = 4.611 < 5.994] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L97.CB, (T0547)G322.CA) [> 4.767 = 7.946 < 10.329] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N96.CB, (T0547)V325.CB) [> 4.475 = 7.458 < 9.695] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)K310.CB) [> 3.249 = 5.415 < 7.040] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K68.CB, (T0547)G77.CA) [> 2.823 = 4.704 < 6.116] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)L419.CB) [> 4.266 = 7.110 < 9.243] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)D422.CB) [> 3.185 = 5.308 < 6.901] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)G421.CA) [> 4.190 = 6.983 < 9.078] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)D422.CB) [> 4.170 = 6.950 < 9.035] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)L419.CB) [> 3.397 = 5.661 < 7.359] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)T413.CB) [> 3.304 = 5.507 < 7.159] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)D422.CB) [> 3.563 = 5.939 < 7.720] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)L419.CB) [> 4.770 = 7.950 < 10.335] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)D422.CB) [> 3.908 = 6.513 < 8.466] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)Y366.CB) [> 3.844 = 6.407 < 8.330] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)L365.CB) [> 2.989 = 4.981 < 6.475] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)L365.CB) [> 3.556 = 5.927 < 7.705] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)V397.CB) [> 4.433 = 7.389 < 9.605] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S341.CB, (T0547)L399.CB) [> 3.873 = 6.454 < 8.391] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)L365.CB) [> 4.235 = 7.059 < 9.177] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)Y366.CB) [> 3.662 = 6.103 < 7.934] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)L365.CB) [> 3.147 = 5.245 < 6.819] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)L420.CB) [> 4.151 = 6.918 < 8.994] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A247.CB, (T0547)A276.CB) [> 3.546 = 5.911 < 7.684] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A247.CB, (T0547)L275.CB) [> 4.229 = 7.048 < 9.163] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)E278.CB) [> 4.498 = 7.496 < 9.745] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L218.CB, (T0547)L266.CB) [> 4.676 = 7.793 < 10.130] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L218.CB, (T0547)L258.CB) [> 3.506 = 5.844 < 7.597] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A214.CB, (T0547)L258.CB) [> 4.144 = 6.907 < 8.979] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A214.CB, (T0547)E257.CB) [> 3.821 = 6.368 < 8.278] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K17.CB, (T0547)A30.CB) [> 3.984 = 6.640 < 8.632] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K17.CB, (T0547)K28.CB) [> 4.210 = 7.017 < 9.123] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F14.CB, (T0547)K27.CB) [> 4.759 = 7.932 < 10.311] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N11.CB, (T0547)I412.CB) [> 4.281 = 7.135 < 9.276] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)W9.CB, (T0547)Q281.CB) [> 2.882 = 4.803 < 6.244] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)G395.CA) [> 4.746 = 7.909 < 10.282] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)H384.CB) [> 4.041 = 6.735 < 8.756] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)D383.CB) [> 3.654 = 6.089 < 7.916] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)D434.CB) [> 3.684 = 6.141 < 7.983] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R293.CB, (T0547)R323.CB) [> 4.728 = 7.880 < 10.244] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)R288.CB) [> 4.241 = 7.068 < 9.189] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)T207.CB) [> 4.412 = 7.354 < 9.560] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R173.CB, (T0547)L223.CB) [> 4.723 = 7.871 < 10.232] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)E164.CB) [> 4.545 = 7.575 < 9.847] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)T413.CB) [> 4.635 = 7.726 < 10.043] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)T413.CB) [> 4.101 = 6.835 < 8.886] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)E548.CB) [> 3.529 = 5.881 < 7.645] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A30.CB, (T0547)H53.CB) [> 4.336 = 7.226 < 9.394] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A30.CB, (T0547)F51.CB) [> 3.107 = 5.178 < 6.731] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)A374.CB) [> 4.730 = 7.883 < 10.248] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)L54.CB) [> 3.835 = 6.392 < 8.310] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)H53.CB) [> 4.294 = 7.157 < 9.304] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)F51.CB) [> 3.244 = 5.406 < 7.028] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K27.CB, (T0547)L54.CB) [> 4.674 = 7.790 < 10.126] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)I32.CB) [> 4.569 = 7.615 < 9.900] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)I478.CB) [> 3.543 = 5.905 < 7.676] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)K95.CB) [> 4.321 = 7.202 < 9.363] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)G92.CA) [> 2.933 = 4.888 < 6.355] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)P91.CB) [> 3.666 = 6.109 < 7.942] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N18.CB, (T0547)K95.CB) [> 2.365 = 3.942 < 5.125] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N18.CB, (T0547)G92.CA) [> 3.610 = 6.017 < 7.823] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K17.CB, (T0547)K95.CB) [> 3.219 = 5.366 < 6.975] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)H329.CB, (T0547)I412.CB) [> 4.740 = 7.900 < 10.270] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)Q309.CB) [> 4.586 = 7.643 < 9.936] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A268.CB, (T0547)S287.CB) [> 4.422 = 7.370 < 9.581] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K219.CB, (T0547)T228.CB) [> 4.303 = 7.172 < 9.323] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L218.CB, (T0547)T228.CB) [> 3.443 = 5.738 < 7.460] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)T228.CB) [> 3.860 = 6.433 < 8.362] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K423.CB, (T0547)D562.CB) [> 4.610 = 7.683 < 9.987] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)P451.CB) [> 3.582 = 5.970 < 7.761] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A416.CB, (T0547)M450.CB) [> 3.695 = 6.158 < 8.005] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S403.CB, (T0547)S445.CB) [> 4.608 = 7.680 < 9.984] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q400.CB, (T0547)P426.CB) [> 3.996 = 6.659 < 8.657] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D398.CB, (T0547)F447.CB) [> 3.758 = 6.264 < 8.143] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V397.CB, (T0547)S449.CB) [> 3.928 = 6.547 < 8.512] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V397.CB, (T0547)F447.CB) [> 2.857 = 4.762 < 6.190] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)S449.CB) [> 3.483 = 5.805 < 7.546] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)F447.CB) [> 3.085 = 5.142 < 6.685] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)L446.CB) [> 3.093 = 5.155 < 6.702] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)L419.CB) [> 4.132 = 6.887 < 8.953] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)Q424.CB) [> 4.052 = 6.753 < 8.779] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)G322.CA) [> 4.243 = 7.072 < 9.194] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)S321.CB) [> 3.961 = 6.602 < 8.582] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)H233.CB, (T0547)S287.CB) [> 3.996 = 6.660 < 8.658] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)L418.CB) [> 2.674 = 4.457 < 5.793] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)L418.CB) [> 4.328 = 7.213 < 9.377] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)H329.CB, (T0547)T413.CB) [> 4.657 = 7.761 < 10.089] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)L441.CB) [> 3.775 = 6.292 < 8.179] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)Y440.CB) [> 3.645 = 6.075 < 7.898] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)G549.CA) [> 3.233 = 5.388 < 7.005] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)E548.CB) [> 4.281 = 7.135 < 9.276] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)L420.CB) [> 4.339 = 7.232 < 9.401] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)P371.CB) [> 3.845 = 6.408 < 8.331] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)N305.CB) [> 3.791 = 6.319 < 8.214] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)K304.CB) [> 3.341 = 5.569 < 7.240] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)G143.CA) [> 4.583 = 7.638 < 9.930] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)E546.CB) [> 3.992 = 6.654 < 8.650] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)S381.CB) [> 4.222 = 7.037 < 9.148] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)D452.CB) [> 4.213 = 7.022 < 9.128] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)L394.CB) [> 2.415 = 4.025 < 5.233] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)I169.CB) [> 3.813 = 6.355 < 8.262] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R137.CB, (T0547)E172.CB) [> 4.050 = 6.749 < 8.774] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q226.CB, (T0547)K267.CB) [> 4.491 = 7.484 < 9.730] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)I538.CB) [> 4.081 = 6.802 < 8.842] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G143.CA, (T0547)K175.CB) [> 4.272 = 7.120 < 9.256] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K286.CB, (T0547)D316.CB) [> 3.547 = 5.911 < 7.685] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)S372.CB) [> 4.407 = 7.345 < 9.548] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)H384.CB) [> 3.266 = 5.444 < 7.077] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)D383.CB) [> 4.293 = 7.156 < 9.302] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G10.CA, (T0547)L54.CB) [> 2.943 = 4.904 < 6.376] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G10.CA, (T0547)V331.CB) [> 4.334 = 7.223 < 9.390] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G10.CA, (T0547)L411.CB) [> 4.521 = 7.535 < 9.795] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N11.CB, (T0547)H53.CB) [> 4.121 = 6.869 < 8.929] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N11.CB, (T0547)K57.CB) [> 3.568 = 5.947 < 7.731] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N11.CB, (T0547)H329.CB) [> 4.448 = 7.413 < 9.638] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E12.CB, (T0547)I23.CB) [> 3.494 = 5.823 < 7.569] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E12.CB, (T0547)K27.CB) [> 2.773 = 4.621 < 6.007] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E12.CB, (T0547)K28.CB) [> 4.666 = 7.777 < 10.111] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E12.CB, (T0547)H53.CB) [> 3.249 = 5.415 < 7.039] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E12.CB, (T0547)E435.CB) [> 4.712 = 7.854 < 10.210] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G19.CA, (T0547)L54.CB) [> 2.943 = 4.906 < 6.378] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G19.CA, (T0547)K57.CB) [> 4.420 = 7.366 < 9.576] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)H379.CB) [> 4.620 = 7.701 < 10.011] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T534.CB, (T0547)G549.CA) [> 3.773 = 6.289 < 8.175] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)S280.CB) [> 4.037 = 6.728 < 8.746] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)Q281.CB) [> 3.447 = 5.746 < 7.469] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)K283.CB) [> 4.465 = 7.441 < 9.674] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)S368.CB) [> 3.168 = 5.281 < 6.865] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)W9.CB, (T0547)S368.CB) [> 4.622 = 7.703 < 10.014] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G10.CA, (T0547)I23.CB) [> 4.107 = 6.845 < 8.899] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G10.CA, (T0547)F51.CB) [> 3.216 = 5.360 < 6.968] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)G274.CA) [> 4.685 = 7.809 < 10.152] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)S287.CB) [> 4.785 = 7.975 < 10.368] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A195.CB, (T0547)H242.CB) [> 3.797 = 6.329 < 8.227] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G198.CA, (T0547)T209.CB) [> 4.089 = 6.815 < 8.859] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G199.CA, (T0547)T209.CB) [> 4.224 = 7.039 < 9.151] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F282.CB, (T0547)K367.CB) [> 4.715 = 7.858 < 10.215] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)F324.CB) [> 4.610 = 7.683 < 9.988] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)S381.CB) [> 4.754 = 7.923 < 10.300] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)D383.CB) [> 4.585 = 7.641 < 9.934] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)L394.CB) [> 4.256 = 7.093 < 9.221] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)G395.CA) [> 4.571 = 7.619 < 9.904] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)S403.CB) [> 4.725 = 7.874 < 10.237] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)L411.CB) [> 4.360 = 7.266 < 9.446] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)V584.CB) [> 3.560 = 5.934 < 7.714] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)T534.CB, (T0547)L583.CB) [> 3.228 = 5.380 < 6.993] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)L292.CB) [> 4.725 = 7.876 < 10.238] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)E308.CB) [> 4.449 = 7.415 < 9.640] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G19.CA, (T0547)H329.CB) [> 4.487 = 7.479 < 9.723] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G19.CA, (T0547)L375.CB) [> 2.837 = 4.728 < 6.146] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)D33.CB) [> 4.706 = 7.844 < 10.197] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)L54.CB) [> 3.464 = 5.773 < 7.505] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)I540.CB) [> 4.517 = 7.528 < 9.787] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)D33.CB) [> 4.378 = 7.297 < 9.486] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)V436.CB) [> 3.981 = 6.634 < 8.624] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)N373.CB) [> 4.080 = 6.800 < 8.840] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)N373.CB) [> 4.668 = 7.779 < 10.113] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)T534.CB) [> 4.274 = 7.123 < 9.260] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)D434.CB) [> 4.648 = 7.746 < 10.070] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)H242.CB) [> 4.630 = 7.717 < 10.032] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K27.CB, (T0547)L441.CB) [> 4.781 = 7.969 < 10.360] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)E285.CB) [> 4.779 = 7.965 < 10.355] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)W194.CB, (T0547)E240.CB) [> 4.755 = 7.924 < 10.302] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S280.CB, (T0547)T413.CB) [> 3.813 = 6.355 < 8.262] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y279.CB, (T0547)T291.CB) [> 4.523 = 7.538 < 9.799] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A214.CB, (T0547)Q226.CB) [> 4.758 = 7.930 < 10.309] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)L408.CB) [> 3.213 = 5.356 < 6.962] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)H410.CB) [> 4.371 = 7.285 < 9.470] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)F392.CB) [> 3.352 = 5.587 < 7.263] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)A476.CB) [> 4.430 = 7.384 < 9.599] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)T413.CB) [> 4.369 = 7.282 < 9.466] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)L420.CB) [> 4.696 = 7.826 < 10.174] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)I417.CB) [> 4.783 = 7.972 < 10.364] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)K415.CB) [> 4.435 = 7.392 < 9.610] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)S368.CB) [> 4.265 = 7.108 < 9.240] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)K423.CB) [> 4.091 = 6.818 < 8.864] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)Y377.CB) [> 3.285 = 5.475 < 7.118] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)Y377.CB) [> 4.268 = 7.113 < 9.247] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)L430.CB) [> 4.734 = 7.890 < 10.257] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E285.CB, (T0547)I412.CB) [> 3.691 = 6.151 < 7.996] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)E285.CB, (T0547)K370.CB) [> 4.660 = 7.767 < 10.097] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q281.CB, (T0547)I412.CB) [> 3.541 = 5.902 < 7.672] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q281.CB, (T0547)L411.CB) [> 4.666 = 7.777 < 10.109] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q281.CB, (T0547)Y290.CB) [> 3.563 = 5.938 < 7.719] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)F282.CB, (T0547)N328.CB) [> 4.002 = 6.670 < 8.671] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)A214.CB, (T0547)F227.CB) [> 4.735 = 7.892 < 10.260] w=0.027 to rejected_constraints # Constraint # added constraint: constraint((T0547)N152.CB, (T0547)P176.CB) [> 3.835 = 6.392 < 8.310] w=0.017 to rejected_constraints # Constraint # added constraint: constraint((T0547)R137.CB, (T0547)N161.CB) [> 4.471 = 7.452 < 9.688] w=0.017 to rejected_constraints # Constraint # added constraint: constraint((T0547)L116.CB, (T0547)A127.CB) [> 3.416 = 5.693 < 7.401] w=0.016 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)L292.CB) [> 4.567 = 7.611 < 9.895] w=0.016 to rejected_constraints # Constraint # added constraint: constraint((T0547)E148.CB, (T0547)A170.CB) [> 4.461 = 7.436 < 9.666] w=0.016 to rejected_constraints # Constraint # added constraint: constraint((T0547)E172.CB, (T0547)L223.CB) [> 3.837 = 6.395 < 8.314] w=0.016 to rejected_constraints # Constraint # added constraint: constraint((T0547)D298.CB, (T0547)K311.CB) [> 3.637 = 6.062 < 7.880] w=0.015 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)D312.CB) [> 4.158 = 6.930 < 9.009] w=0.015 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)S236.CB) [> 2.012 = 3.354 < 4.360] w=0.015 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)S236.CB) [> 3.983 = 6.639 < 8.630] w=0.015 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)D312.CB) [> 4.423 = 7.371 < 9.583] w=0.015 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)P315.CB) [> 3.684 = 6.140 < 7.982] w=0.015 to rejected_constraints # Constraint # added constraint: constraint((T0547)A146.CB, (T0547)I169.CB) [> 4.611 = 7.685 < 9.991] w=0.015 to rejected_constraints # Constraint # added constraint: constraint((T0547)A146.CB, (T0547)I166.CB) [> 4.345 = 7.241 < 9.414] w=0.015 to rejected_constraints # Constraint # added constraint: constraint((T0547)E172.CB, (T0547)L224.CB) [> 3.792 = 6.320 < 8.216] w=0.015 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)N201.CB) [> 4.287 = 7.145 < 9.289] w=0.015 to rejected_constraints # Constraint # added constraint: constraint((T0547)S202.CB, (T0547)S236.CB) [> 3.147 = 5.246 < 6.819] w=0.015 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)D401.CB) [> 4.684 = 7.806 < 10.148] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)I478.CB) [> 3.441 = 5.735 < 7.456] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)E470.CB) [> 3.417 = 5.696 < 7.404] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)F444.CB) [> 4.145 = 6.909 < 8.982] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)D401.CB) [> 4.332 = 7.220 < 9.386] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)E470.CB) [> 4.669 = 7.782 < 10.117] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S341.CB, (T0547)V502.CB) [> 4.035 = 6.725 < 8.742] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)E505.CB) [> 3.483 = 5.805 < 7.546] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)E505.CB) [> 4.069 = 6.782 < 8.817] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)E505.CB) [> 3.891 = 6.485 < 8.430] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)A476.CB) [> 4.741 = 7.902 < 10.273] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)Q448.CB) [> 3.573 = 5.955 < 7.741] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)Y440.CB) [> 4.367 = 7.278 < 9.461] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)E314.CB) [> 3.501 = 5.835 < 7.585] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)E314.CB) [> 4.252 = 7.087 < 9.213] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)F460.CB) [> 3.986 = 6.643 < 8.636] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)E457.CB) [> 2.894 = 4.824 < 6.271] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)M450.CB) [> 4.800 = 8.000 < 10.400] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)E457.CB) [> 2.957 = 4.928 < 6.406] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)E457.CB) [> 3.813 = 6.356 < 8.262] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)E471.CB) [> 3.924 = 6.541 < 8.503] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)E470.CB) [> 4.472 = 7.454 < 9.690] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)D401.CB) [> 3.401 = 5.669 < 7.370] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)E470.CB) [> 4.233 = 7.055 < 9.171] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)D401.CB) [> 4.672 = 7.786 < 10.122] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)I478.CB) [> 4.055 = 6.758 < 8.785] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)E471.CB) [> 2.886 = 4.810 < 6.253] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)E470.CB) [> 3.045 = 5.076 < 6.598] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G42.CA, (T0547)G549.CA) [> 4.201 = 7.002 < 9.103] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G42.CA, (T0547)L441.CB) [> 4.333 = 7.222 < 9.388] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L557.CB, (T0547)D566.CB) [> 4.525 = 7.542 < 9.805] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q448.CB, (T0547)E535.CB) [> 4.779 = 7.965 < 10.354] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)W454.CB) [> 4.368 = 7.280 < 9.465] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)F453.CB) [> 4.235 = 7.059 < 9.176] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)F453.CB) [> 3.174 = 5.291 < 6.878] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)D452.CB) [> 4.346 = 7.243 < 9.416] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)G455.CA) [> 4.099 = 6.831 < 8.880] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)W454.CB) [> 2.886 = 4.810 < 6.253] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)F453.CB) [> 4.204 = 7.007 < 9.109] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)L313.CB) [> 4.199 = 6.998 < 9.098] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D136.CB, (T0547)L163.CB) [> 4.639 = 7.732 < 10.052] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N96.CB, (T0547)N541.CB) [> 4.409 = 7.348 < 9.552] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N96.CB, (T0547)L446.CB) [> 4.488 = 7.480 < 9.724] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)S539.CB) [> 4.273 = 7.122 < 9.259] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)I537.CB) [> 3.029 = 5.048 < 6.563] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)F444.CB) [> 4.244 = 7.073 < 9.195] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)V442.CB) [> 3.019 = 5.032 < 6.542] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)V442.CB) [> 4.480 = 7.467 < 9.707] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)K283.CB) [> 4.712 = 7.853 < 10.209] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)L313.CB) [> 3.824 = 6.373 < 8.285] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K76.CB, (T0547)E314.CB) [> 4.798 = 7.996 < 10.395] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)K310.CB) [> 4.253 = 7.088 < 9.215] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)S287.CB) [> 4.751 = 7.918 < 10.294] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)K283.CB) [> 4.253 = 7.088 < 9.215] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)G544.CA) [> 3.655 = 6.092 < 7.919] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)V547.CB) [> 3.629 = 6.048 < 7.862] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)G544.CA) [> 4.481 = 7.469 < 9.710] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)V547.CB) [> 4.644 = 7.741 < 10.063] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)W479.CB) [> 4.484 = 7.474 < 9.716] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)M450.CB) [> 3.201 = 5.335 < 6.935] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)S449.CB) [> 4.106 = 6.844 < 8.897] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I432.CB, (T0547)M450.CB) [> 3.110 = 5.183 < 6.738] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I432.CB, (T0547)V442.CB) [> 4.298 = 7.163 < 9.312] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)P472.CB) [> 3.013 = 5.022 < 6.528] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)E471.CB) [> 3.792 = 6.320 < 8.215] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)E470.CB) [> 4.332 = 7.220 < 9.386] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)P472.CB) [> 3.944 = 6.573 < 8.545] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)E471.CB) [> 4.079 = 6.799 < 8.838] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N425.CB, (T0547)I538.CB) [> 3.939 = 6.565 < 8.534] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N425.CB, (T0547)P472.CB) [> 3.957 = 6.596 < 8.574] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K423.CB, (T0547)S475.CB) [> 4.444 = 7.407 < 9.629] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)S475.CB) [> 3.600 = 6.001 < 7.801] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)A536.CB) [> 3.352 = 5.587 < 7.263] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)E535.CB) [> 4.739 = 7.898 < 10.268] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)T534.CB) [> 3.749 = 6.248 < 8.122] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)D503.CB) [> 3.989 = 6.648 < 8.642] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)T482.CB) [> 4.434 = 7.390 < 9.608] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)I481.CB) [> 3.993 = 6.655 < 8.651] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)W479.CB) [> 4.324 = 7.207 < 9.370] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)M450.CB) [> 4.055 = 6.758 < 8.786] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)S449.CB) [> 4.388 = 7.314 < 9.508] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E435.CB, (T0547)E542.CB) [> 2.340 = 3.901 < 5.071] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E435.CB, (T0547)N541.CB) [> 4.716 = 7.860 < 10.217] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E435.CB, (T0547)I540.CB) [> 3.893 = 6.488 < 8.435] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E435.CB, (T0547)I538.CB) [> 4.586 = 7.644 < 9.937] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E435.CB, (T0547)I537.CB) [> 2.333 = 3.888 < 5.054] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E435.CB, (T0547)A536.CB) [> 4.017 = 6.695 < 8.704] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D434.CB, (T0547)I537.CB) [> 4.011 = 6.685 < 8.691] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D434.CB, (T0547)A536.CB) [> 3.184 = 5.307 < 6.899] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D434.CB, (T0547)W479.CB) [> 3.320 = 5.533 < 7.193] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)D503.CB) [> 3.989 = 6.649 < 8.644] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)D503.CB) [> 4.120 = 6.867 < 8.927] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)D501.CB) [> 3.660 = 6.099 < 7.929] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R402.CB, (T0547)E471.CB) [> 3.354 = 5.590 < 7.267] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R402.CB, (T0547)E470.CB) [> 2.457 = 4.095 < 5.324] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D401.CB, (T0547)E470.CB) [> 4.651 = 7.752 < 10.077] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)I417.CB) [> 4.039 = 6.732 < 8.751] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)K415.CB) [> 4.553 = 7.588 < 9.865] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)K414.CB) [> 4.660 = 7.766 < 10.096] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)L394.CB) [> 4.639 = 7.732 < 10.051] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)L419.CB) [> 4.269 = 7.115 < 9.249] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)E435.CB) [> 2.869 = 4.781 < 6.215] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)I432.CB) [> 4.380 = 7.299 < 9.489] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)L419.CB) [> 4.638 = 7.730 < 10.049] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)V436.CB) [> 3.946 = 6.576 < 8.549] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)L456.CB) [> 4.494 = 7.490 < 9.738] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)R474.CB) [> 2.882 = 4.803 < 6.244] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)D428.CB) [> 3.546 = 5.911 < 7.684] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)T473.CB) [> 2.824 = 4.707 < 6.119] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)P472.CB) [> 3.796 = 6.327 < 8.225] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)A476.CB) [> 3.660 = 6.099 < 7.929] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)S475.CB) [> 4.177 = 6.962 < 9.051] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)L419.CB) [> 4.268 = 7.114 < 9.248] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P461.CB, (T0547)F530.CB) [> 4.033 = 6.721 < 8.737] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F460.CB, (T0547)I540.CB) [> 4.180 = 6.966 < 9.056] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F460.CB, (T0547)S539.CB) [> 4.100 = 6.834 < 8.884] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F460.CB, (T0547)F530.CB) [> 4.740 = 7.901 < 10.271] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q458.CB, (T0547)N541.CB) [> 4.777 = 7.962 < 10.350] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S445.CB, (T0547)I540.CB) [> 3.793 = 6.321 < 8.218] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S445.CB, (T0547)Q458.CB) [> 3.648 = 6.080 < 7.904] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S445.CB, (T0547)E457.CB) [> 3.115 = 5.191 < 6.749] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)F460.CB) [> 2.966 = 4.943 < 6.426] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)N284.CB) [> 2.744 = 4.574 < 5.946] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)R288.CB) [> 4.699 = 7.832 < 10.181] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K76.CB, (T0547)K286.CB) [> 3.629 = 6.048 < 7.862] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)N284.CB) [> 3.096 = 5.160 < 6.708] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)E314.CB) [> 3.425 = 5.709 < 7.422] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K57.CB, (T0547)E314.CB) [> 3.090 = 5.150 < 6.696] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)L446.CB) [> 4.674 = 7.790 < 10.127] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L54.CB, (T0547)E314.CB) [> 2.382 = 3.970 < 5.161] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)F447.CB) [> 3.981 = 6.635 < 8.626] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)E314.CB) [> 4.647 = 7.745 < 10.069] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)D452.CB) [> 4.782 = 7.970 < 10.361] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)P451.CB) [> 4.043 = 6.739 < 8.761] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)L446.CB) [> 4.651 = 7.751 < 10.077] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)E314.CB) [> 4.765 = 7.942 < 10.325] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)P461.CB) [> 3.689 = 6.148 < 7.993] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)T531.CB) [> 3.059 = 5.098 < 6.627] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)F530.CB) [> 4.207 = 7.012 < 9.115] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)I462.CB) [> 3.691 = 6.152 < 7.998] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)P461.CB) [> 4.018 = 6.697 < 8.706] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q437.CB, (T0547)A536.CB) [> 4.636 = 7.727 < 10.045] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q437.CB, (T0547)T531.CB) [> 3.466 = 5.777 < 7.510] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q437.CB, (T0547)I462.CB) [> 3.727 = 6.212 < 8.076] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)A553.CB) [> 3.428 = 5.713 < 7.427] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)I462.CB) [> 3.734 = 6.224 < 8.091] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E435.CB, (T0547)A553.CB) [> 4.618 = 7.696 < 10.005] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D434.CB, (T0547)A553.CB) [> 4.495 = 7.492 < 9.740] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I432.CB, (T0547)Q554.CB) [> 4.744 = 7.907 < 10.280] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)Q437.CB) [> 4.197 = 6.995 < 9.094] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)Q437.CB) [> 3.523 = 5.871 < 7.633] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)V436.CB) [> 4.287 = 7.145 < 9.289] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)E457.CB) [> 4.655 = 7.758 < 10.086] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)F460.CB) [> 4.576 = 7.627 < 9.916] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)P461.CB) [> 4.662 = 7.770 < 10.101] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)F460.CB) [> 2.954 = 4.923 < 6.400] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)N459.CB) [> 4.359 = 7.265 < 9.445] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)P461.CB) [> 3.878 = 6.463 < 8.403] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)F460.CB) [> 4.340 = 7.234 < 9.404] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)N459.CB) [> 3.263 = 5.439 < 7.071] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)G549.CA) [> 4.756 = 7.927 < 10.306] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)I462.CB) [> 2.612 = 4.353 < 5.659] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)P461.CB) [> 4.219 = 7.032 < 9.141] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)L563.CB) [> 4.581 = 7.636 < 9.926] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)I462.CB) [> 4.067 = 6.778 < 8.811] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)M450.CB) [> 2.704 = 4.507 < 5.859] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)S449.CB) [> 4.448 = 7.414 < 9.638] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)Q448.CB) [> 3.406 = 5.676 < 7.379] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)L430.CB) [> 4.751 = 7.918 < 10.293] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R402.CB, (T0547)P426.CB) [> 4.521 = 7.536 < 9.796] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)I388.CB) [> 3.323 = 5.538 < 7.200] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)I388.CB) [> 3.788 = 6.313 < 8.207] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)L375.CB) [> 4.389 = 7.314 < 9.509] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)A374.CB) [> 3.323 = 5.539 < 7.201] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)V436.CB) [> 4.740 = 7.900 < 10.270] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)D398.CB) [> 3.453 = 5.754 < 7.481] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)L446.CB) [> 2.703 = 4.505 < 5.856] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)S445.CB) [> 3.329 = 5.549 < 7.214] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)R402.CB) [> 4.788 = 7.980 < 10.374] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)L375.CB) [> 4.800 = 8.000 < 10.400] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)S387.CB) [> 3.504 = 5.840 < 7.591] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)E386.CB) [> 4.781 = 7.968 < 10.358] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)D452.CB) [> 4.599 = 7.665 < 9.964] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)E457.CB) [> 4.799 = 7.998 < 10.397] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)G455.CA) [> 2.653 = 4.422 < 5.749] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)W454.CB) [> 4.028 = 6.714 < 8.728] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)F453.CB) [> 3.605 = 6.008 < 7.810] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)E457.CB) [> 3.200 = 5.333 < 6.933] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)L456.CB) [> 4.248 = 7.079 < 9.203] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)E457.CB) [> 4.533 = 7.556 < 9.822] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)L456.CB) [> 2.764 = 4.607 < 5.988] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)E546.CB) [> 4.013 = 6.688 < 8.695] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N425.CB, (T0547)T559.CB) [> 4.155 = 6.925 < 9.002] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q424.CB, (T0547)D564.CB) [> 4.099 = 6.831 < 8.881] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K423.CB, (T0547)F447.CB) [> 3.902 = 6.503 < 8.454] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)L563.CB) [> 3.960 = 6.601 < 8.581] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)V547.CB) [> 4.772 = 7.954 < 10.340] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)Q433.CB) [> 3.956 = 6.593 < 8.571] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)P451.CB) [> 4.744 = 7.907 < 10.279] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)S280.CB) [> 4.596 = 7.659 < 9.957] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G205.CA, (T0547)I254.CB) [> 4.643 = 7.739 < 10.060] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G205.CA, (T0547)A214.CB) [> 4.537 = 7.561 < 9.829] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)G205.CA) [> 2.280 = 3.800 < 4.940] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I157.CB, (T0547)E225.CB) [> 4.232 = 7.054 < 9.170] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T156.CB, (T0547)G192.CA) [> 4.629 = 7.716 < 10.031] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G143.CA, (T0547)K171.CB) [> 3.517 = 5.861 < 7.619] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)L223.CB) [> 4.730 = 7.883 < 10.248] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I142.CB, (T0547)K171.CB) [> 2.725 = 4.542 < 5.905] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N141.CB, (T0547)L224.CB) [> 4.691 = 7.819 < 10.164] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N141.CB, (T0547)K171.CB) [> 2.768 = 4.613 < 5.997] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)L223.CB) [> 4.730 = 7.883 < 10.248] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)D452.CB) [> 4.221 = 7.034 < 9.145] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)W454.CB) [> 4.690 = 7.816 < 10.161] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)E438.CB) [> 4.304 = 7.174 < 9.326] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)D434.CB) [> 4.183 = 6.972 < 9.064] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)E285.CB) [> 4.602 = 7.669 < 9.970] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)N355.CB) [> 3.005 = 5.009 < 6.512] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)Q354.CB) [> 4.128 = 6.880 < 8.944] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S341.CB, (T0547)N355.CB) [> 4.037 = 6.729 < 8.747] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S341.CB, (T0547)Q354.CB) [> 3.290 = 5.483 < 7.127] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E314.CB, (T0547)H329.CB) [> 4.161 = 6.935 < 9.015] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E285.CB, (T0547)F318.CB) [> 4.412 = 7.353 < 9.559] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N284.CB, (T0547)I319.CB) [> 3.581 = 5.969 < 7.759] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N284.CB, (T0547)F318.CB) [> 4.567 = 7.612 < 9.895] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K283.CB, (T0547)L557.CB) [> 4.741 = 7.902 < 10.272] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)N284.CB) [> 4.389 = 7.316 < 9.510] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)K283.CB) [> 3.175 = 5.292 < 6.879] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)K286.CB) [> 3.818 = 6.363 < 8.272] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)E285.CB) [> 4.160 = 6.932 < 9.012] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)E285.CB) [> 2.694 = 4.490 < 5.837] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)K283.CB) [> 3.947 = 6.578 < 8.552] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)S280.CB) [> 4.303 = 7.172 < 9.323] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)F282.CB) [> 4.794 = 7.990 < 10.387] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)S280.CB) [> 4.659 = 7.765 < 10.095] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R293.CB, (T0547)K415.CB) [> 3.346 = 5.577 < 7.250] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R293.CB, (T0547)K414.CB) [> 3.412 = 5.687 < 7.394] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R293.CB, (T0547)S372.CB) [> 3.634 = 6.057 < 7.874] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R293.CB, (T0547)P371.CB) [> 2.600 = 4.333 < 5.633] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L292.CB, (T0547)K415.CB) [> 4.745 = 7.909 < 10.281] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L292.CB, (T0547)K414.CB) [> 2.995 = 4.991 < 6.489] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L292.CB, (T0547)T413.CB) [> 4.075 = 6.792 < 8.829] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L292.CB, (T0547)I412.CB) [> 3.502 = 5.837 < 7.589] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L292.CB, (T0547)S372.CB) [> 3.045 = 5.074 < 6.597] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L292.CB, (T0547)P371.CB) [> 4.517 = 7.528 < 9.786] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L292.CB, (T0547)N328.CB) [> 4.470 = 7.450 < 9.684] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T291.CB, (T0547)L419.CB) [> 4.655 = 7.758 < 10.086] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T291.CB, (T0547)I417.CB) [> 4.799 = 7.998 < 10.398] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T291.CB, (T0547)A416.CB) [> 2.496 = 4.160 < 5.408] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T291.CB, (T0547)K415.CB) [> 3.273 = 5.455 < 7.091] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T291.CB, (T0547)K414.CB) [> 3.696 = 6.160 < 8.008] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T291.CB, (T0547)T413.CB) [> 3.256 = 5.427 < 7.055] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)L394.CB) [> 4.631 = 7.718 < 10.033] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)I388.CB) [> 4.551 = 7.585 < 9.861] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)I388.CB) [> 3.805 = 6.341 < 8.244] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)L389.CB) [> 4.115 = 6.859 < 8.917] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)Y377.CB) [> 4.012 = 6.686 < 8.692] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)L419.CB) [> 4.553 = 7.589 < 9.865] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)P371.CB) [> 4.794 = 7.989 < 10.386] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)L420.CB) [> 4.750 = 7.917 < 10.292] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)L419.CB) [> 4.750 = 7.917 < 10.292] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P315.CB, (T0547)I412.CB) [> 4.591 = 7.652 < 9.948] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L313.CB, (T0547)N328.CB) [> 3.986 = 6.643 < 8.635] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K310.CB, (T0547)I319.CB) [> 3.352 = 5.586 < 7.262] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A307.CB, (T0547)I319.CB) [> 4.370 = 7.284 < 9.469] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)S372.CB) [> 3.576 = 5.960 < 7.748] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)N328.CB) [> 4.139 = 6.898 < 8.967] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E294.CB, (T0547)A416.CB) [> 4.788 = 7.980 < 10.374] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E294.CB, (T0547)D312.CB) [> 2.863 = 4.772 < 6.204] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)V277.CB) [> 4.746 = 7.910 < 10.283] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A247.CB, (T0547)I306.CB) [> 4.461 = 7.435 < 9.665] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A247.CB, (T0547)Y279.CB) [> 4.656 = 7.760 < 10.088] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)E308.CB) [> 3.550 = 5.917 < 7.692] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)K283.CB) [> 3.587 = 5.978 < 7.772] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)F282.CB) [> 4.283 = 7.138 < 9.280] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)Y279.CB) [> 3.035 = 5.059 < 6.577] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)D312.CB) [> 4.717 = 7.861 < 10.219] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)K311.CB) [> 4.607 = 7.678 < 9.981] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)Y279.CB) [> 2.256 = 3.761 < 4.889] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)K311.CB) [> 4.223 = 7.038 < 9.149] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)Y279.CB) [> 3.824 = 6.374 < 8.286] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E240.CB, (T0547)K311.CB) [> 4.364 = 7.273 < 9.455] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)E376.CB) [> 3.842 = 6.404 < 8.325] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)L375.CB) [> 4.538 = 7.564 < 9.833] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)K311.CB) [> 3.827 = 6.378 < 8.291] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)K310.CB) [> 3.516 = 5.859 < 7.617] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T291.CB, (T0547)I412.CB) [> 4.413 = 7.354 < 9.560] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T291.CB, (T0547)P371.CB) [> 4.700 = 7.833 < 10.183] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T291.CB, (T0547)A330.CB) [> 4.214 = 7.024 < 9.131] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T291.CB, (T0547)N328.CB) [> 3.936 = 6.560 < 8.529] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)D312.CB) [> 2.599 = 4.332 < 5.631] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)K311.CB) [> 4.675 = 7.791 < 10.128] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N284.CB, (T0547)K311.CB) [> 4.714 = 7.857 < 10.214] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N284.CB, (T0547)K310.CB) [> 3.362 = 5.603 < 7.284] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F282.CB, (T0547)I319.CB) [> 4.496 = 7.494 < 9.742] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E278.CB, (T0547)A307.CB) [> 4.734 = 7.890 < 10.257] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E278.CB, (T0547)I306.CB) [> 3.003 = 5.005 < 6.506] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T256.CB, (T0547)I269.CB) [> 4.555 = 7.591 < 9.869] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)L313.CB) [> 4.160 = 6.934 < 9.014] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)D312.CB) [> 4.456 = 7.427 < 9.655] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N249.CB, (T0547)E308.CB) [> 4.308 = 7.180 < 9.335] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N249.CB, (T0547)A307.CB) [> 4.271 = 7.118 < 9.253] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)E308.CB) [> 4.212 = 7.020 < 9.125] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)S287.CB) [> 4.245 = 7.075 < 9.197] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)Y491.CB) [> 4.092 = 6.821 < 8.867] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)S492.CB) [> 4.144 = 6.907 < 8.979] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)Y491.CB) [> 3.360 = 5.600 < 7.280] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)I481.CB) [> 4.418 = 7.364 < 9.573] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K423.CB, (T0547)Y440.CB) [> 2.945 = 4.909 < 6.382] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)I550.CB) [> 4.092 = 6.820 < 8.866] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)I550.CB) [> 4.185 = 6.975 < 9.067] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)P533.CB) [> 3.840 = 6.401 < 8.321] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)L441.CB) [> 4.444 = 7.406 < 9.628] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)P533.CB) [> 4.585 = 7.642 < 9.935] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D393.CB, (T0547)R402.CB) [> 4.657 = 7.762 < 10.091] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L389.CB, (T0547)H410.CB) [> 4.502 = 7.503 < 9.754] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E386.CB, (T0547)D398.CB) [> 3.035 = 5.059 < 6.576] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E138.CB, (T0547)M149.CB) [> 3.580 = 5.966 < 7.756] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E138.CB, (T0547)E148.CB) [> 3.441 = 5.734 < 7.455] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R137.CB, (T0547)P176.CB) [> 4.603 = 7.672 < 9.973] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R137.CB, (T0547)F174.CB) [> 2.922 = 4.871 < 6.332] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R137.CB, (T0547)E148.CB) [> 3.643 = 6.072 < 7.894] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D136.CB, (T0547)P178.CB) [> 4.357 = 7.262 < 9.441] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D136.CB, (T0547)A170.CB) [> 4.650 = 7.750 < 10.076] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D136.CB, (T0547)D168.CB) [> 4.603 = 7.672 < 9.974] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)E172.CB) [> 4.790 = 7.983 < 10.378] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)L139.CB) [> 4.142 = 6.903 < 8.974] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L117.CB, (T0547)E138.CB) [> 3.896 = 6.493 < 8.440] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)V277.CB) [> 4.788 = 7.980 < 10.374] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L54.CB, (T0547)N541.CB) [> 4.034 = 6.723 < 8.740] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A536.CB, (T0547)I550.CB) [> 4.078 = 6.796 < 8.835] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T534.CB, (T0547)E552.CB) [> 3.823 = 6.372 < 8.283] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T534.CB, (T0547)I550.CB) [> 3.336 = 5.560 < 7.228] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P533.CB, (T0547)I550.CB) [> 3.968 = 6.614 < 8.598] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)L375.CB) [> 4.507 = 7.511 < 9.764] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)F392.CB) [> 3.086 = 5.143 < 6.686] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)L375.CB) [> 4.392 = 7.321 < 9.517] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)D364.CB) [> 2.667 = 4.444 < 5.777] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)Y363.CB) [> 3.054 = 5.091 < 6.618] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)Y366.CB) [> 3.461 = 5.768 < 7.499] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)I388.CB) [> 3.664 = 6.107 < 7.940] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)L365.CB) [> 4.565 = 7.608 < 9.891] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)L411.CB) [> 4.666 = 7.776 < 10.109] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)I388.CB) [> 3.263 = 5.438 < 7.069] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)D401.CB) [> 4.180 = 6.967 < 9.057] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)G395.CA) [> 4.066 = 6.776 < 8.809] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)L394.CB) [> 4.734 = 7.889 < 10.256] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)D393.CB) [> 2.484 = 4.139 < 5.381] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)F392.CB) [> 4.042 = 6.736 < 8.757] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E343.CB, (T0547)F392.CB) [> 4.507 = 7.512 < 9.765] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L385.CB, (T0547)H410.CB) [> 3.474 = 5.790 < 7.527] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)L408.CB) [> 4.615 = 7.691 < 9.999] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)L391.CB) [> 3.420 = 5.700 < 7.410] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)T413.CB) [> 4.341 = 7.234 < 9.405] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)S387.CB) [> 4.313 = 7.188 < 9.345] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)E386.CB) [> 2.923 = 4.871 < 6.332] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N373.CB, (T0547)T413.CB) [> 3.783 = 6.305 < 8.196] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N373.CB, (T0547)L411.CB) [> 4.573 = 7.621 < 9.907] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)I412.CB) [> 3.988 = 6.646 < 8.640] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)L411.CB) [> 3.981 = 6.636 < 8.626] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)H410.CB) [> 3.922 = 6.537 < 8.498] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)L389.CB) [> 4.398 = 7.330 < 9.529] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)P533.CB) [> 4.445 = 7.409 < 9.632] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)L389.CB) [> 4.768 = 7.947 < 10.331] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)S387.CB) [> 4.783 = 7.971 < 10.362] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)I417.CB) [> 4.718 = 7.864 < 10.223] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)K414.CB) [> 2.849 = 4.749 < 6.174] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)L418.CB) [> 4.294 = 7.156 < 9.303] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T482.CB, (T0547)D501.CB) [> 2.835 = 4.726 < 6.143] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I481.CB, (T0547)D503.CB) [> 3.198 = 5.331 < 6.930] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I481.CB, (T0547)D501.CB) [> 3.612 = 6.020 < 7.826] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P461.CB, (T0547)I551.CB) [> 3.944 = 6.574 < 8.546] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P461.CB, (T0547)I550.CB) [> 3.566 = 5.944 < 7.727] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P461.CB, (T0547)I537.CB) [> 3.450 = 5.750 < 7.475] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F460.CB, (T0547)I537.CB) [> 4.255 = 7.092 < 9.220] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N459.CB, (T0547)Q554.CB) [> 3.725 = 6.208 < 8.071] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N459.CB, (T0547)A553.CB) [> 4.256 = 7.094 < 9.222] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q458.CB, (T0547)Q554.CB) [> 4.008 = 6.680 < 8.684] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L446.CB, (T0547)V547.CB) [> 2.387 = 3.978 < 5.172] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L446.CB, (T0547)Y545.CB) [> 4.113 = 6.855 < 8.911] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L446.CB, (T0547)G544.CA) [> 3.931 = 6.551 < 8.516] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L446.CB, (T0547)K543.CB) [> 2.884 = 4.807 < 6.250] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S445.CB, (T0547)V547.CB) [> 3.696 = 6.160 < 8.007] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S445.CB, (T0547)E546.CB) [> 3.764 = 6.274 < 8.156] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S445.CB, (T0547)G544.CA) [> 3.123 = 5.206 < 6.767] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)E546.CB) [> 4.340 = 7.234 < 9.404] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)S490.CB) [> 4.575 = 7.625 < 9.913] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)Y377.CB) [> 4.345 = 7.242 < 9.415] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D41.CB, (T0547)L408.CB) [> 3.930 = 6.551 < 8.516] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V547.CB, (T0547)D558.CB) [> 3.147 = 5.245 < 6.818] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E546.CB, (T0547)S555.CB) [> 3.821 = 6.368 < 8.279] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I538.CB, (T0547)T559.CB) [> 4.792 = 7.986 < 10.382] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I537.CB, (T0547)E552.CB) [> 4.745 = 7.908 < 10.281] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I537.CB, (T0547)I551.CB) [> 2.910 = 4.849 < 6.304] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I537.CB, (T0547)I550.CB) [> 4.270 = 7.116 < 9.251] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E505.CB, (T0547)P533.CB) [> 2.653 = 4.422 < 5.748] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V504.CB, (T0547)P533.CB) [> 3.240 = 5.401 < 7.021] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)E542.CB) [> 4.594 = 7.656 < 9.953] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)T482.CB) [> 3.210 = 5.351 < 6.956] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)S449.CB) [> 3.315 = 5.525 < 7.182] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)Q448.CB) [> 2.891 = 4.818 < 6.263] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)G544.CA) [> 3.561 = 5.935 < 7.715] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)K543.CB) [> 1.453 = 2.421 < 3.148] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)E542.CB) [> 2.462 = 4.103 < 5.334] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)M450.CB) [> 3.958 = 6.597 < 8.577] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)S449.CB) [> 2.637 = 4.394 < 5.712] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)Q448.CB) [> 4.715 = 7.858 < 10.216] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q437.CB, (T0547)K543.CB) [> 4.759 = 7.932 < 10.312] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q437.CB, (T0547)E542.CB) [> 4.516 = 7.527 < 9.785] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q437.CB, (T0547)T534.CB) [> 3.870 = 6.450 < 8.385] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q437.CB, (T0547)D503.CB) [> 3.927 = 6.545 < 8.509] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q437.CB, (T0547)T482.CB) [> 4.383 = 7.304 < 9.495] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)E542.CB) [> 4.534 = 7.556 < 9.823] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)I537.CB) [> 4.760 = 7.934 < 10.314] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S445.CB, (T0547)K543.CB) [> 4.734 = 7.890 < 10.257] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)I550.CB) [> 4.240 = 7.067 < 9.187] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)G549.CA) [> 3.602 = 6.004 < 7.805] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)E546.CB) [> 4.165 = 6.941 < 9.023] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)E470.CB) [> 3.336 = 5.560 < 7.228] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)E546.CB) [> 3.661 = 6.102 < 7.932] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)S477.CB) [> 3.576 = 5.961 < 7.749] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)P472.CB) [> 3.893 = 6.488 < 8.434] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)I550.CB) [> 2.774 = 4.624 < 6.011] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)Y545.CB) [> 3.722 = 6.203 < 8.064] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)F453.CB) [> 4.738 = 7.897 < 10.266] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)M450.CB) [> 3.313 = 5.522 < 7.178] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)S449.CB) [> 4.367 = 7.278 < 9.461] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)Y545.CB) [> 4.110 = 6.849 < 8.904] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)K543.CB) [> 4.605 = 7.676 < 9.978] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)I140.CB) [> 4.243 = 7.072 < 9.194] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)I142.CB) [> 4.473 = 7.455 < 9.691] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A127.CB, (T0547)A146.CB) [> 4.733 = 7.888 < 10.254] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G126.CA, (T0547)T154.CB) [> 4.476 = 7.460 < 9.698] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G126.CA, (T0547)I153.CB) [> 4.129 = 6.882 < 8.947] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N124.CB, (T0547)H151.CB) [> 4.771 = 7.952 < 10.338] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)M120.CB, (T0547)G143.CA) [> 3.731 = 6.218 < 8.084] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E115.CB, (T0547)I551.CB) [> 3.404 = 5.673 < 7.374] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E115.CB, (T0547)A127.CB) [> 4.783 = 7.972 < 10.363] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A114.CB, (T0547)A553.CB) [> 3.166 = 5.277 < 6.860] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)A296.CB) [> 4.018 = 6.697 < 8.706] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)L362.CB) [> 4.755 = 7.926 < 10.303] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)K310.CB) [> 3.319 = 5.531 < 7.190] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)I306.CB) [> 4.794 = 7.989 < 10.386] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)P371.CB) [> 4.756 = 7.926 < 10.304] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)I254.CB) [> 4.669 = 7.782 < 10.117] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)Y255.CB) [> 4.713 = 7.856 < 10.212] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S208.CB, (T0547)Y255.CB) [> 4.578 = 7.630 < 9.918] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)N249.CB) [> 4.707 = 7.845 < 10.198] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)I254.CB) [> 4.340 = 7.234 < 9.404] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P178.CB, (T0547)L218.CB) [> 4.651 = 7.752 < 10.078] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)I153.CB) [> 3.482 = 5.803 < 7.544] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L139.CB, (T0547)I166.CB) [> 3.907 = 6.512 < 8.465] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L139.CB, (T0547)A165.CB) [> 3.802 = 6.337 < 8.238] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)I180.CB) [> 4.787 = 7.979 < 10.372] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)G192.CA) [> 4.730 = 7.883 < 10.248] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)V191.CB) [> 3.208 = 5.346 < 6.950] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)S492.CB) [> 3.537 = 5.896 < 7.664] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)I551.CB) [> 4.330 = 7.217 < 9.383] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)G549.CA) [> 4.488 = 7.480 < 9.724] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)S492.CB) [> 4.391 = 7.319 < 9.514] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)I550.CB) [> 3.684 = 6.140 < 7.982] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)E552.CB) [> 4.658 = 7.764 < 10.093] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)I550.CB) [> 4.389 = 7.316 < 9.510] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)E548.CB) [> 4.508 = 7.513 < 9.767] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)A536.CB) [> 4.435 = 7.392 < 9.610] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)S492.CB) [> 4.518 = 7.530 < 9.789] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)L441.CB) [> 4.435 = 7.392 < 9.610] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)S287.CB) [> 3.425 = 5.708 < 7.421] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)Q309.CB) [> 3.929 = 6.548 < 8.512] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)S287.CB) [> 3.191 = 5.318 < 6.914] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)N284.CB) [> 4.366 = 7.277 < 9.460] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A114.CB, (T0547)E552.CB) [> 4.208 = 7.014 < 9.118] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)I129.CB) [> 3.845 = 6.409 < 8.331] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S112.CB, (T0547)A553.CB) [> 4.374 = 7.291 < 9.478] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S112.CB, (T0547)I129.CB) [> 4.304 = 7.173 < 9.324] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G111.CA, (T0547)I129.CB) [> 3.513 = 5.855 < 7.611] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A110.CB, (T0547)A127.CB) [> 3.271 = 5.452 < 7.088] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E109.CB, (T0547)A127.CB) [> 4.474 = 7.457 < 9.694] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N105.CB, (T0547)G126.CA) [> 3.969 = 6.615 < 8.600] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N105.CB, (T0547)E125.CB) [> 3.196 = 5.327 < 6.925] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y104.CB, (T0547)E125.CB) [> 3.782 = 6.303 < 8.194] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K102.CB, (T0547)E125.CB) [> 3.238 = 5.397 < 7.017] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K102.CB, (T0547)N124.CB) [> 4.489 = 7.481 < 9.725] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G101.CA, (T0547)A127.CB) [> 4.671 = 7.785 < 10.120] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G101.CA, (T0547)N123.CB) [> 3.503 = 5.839 < 7.591] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)S492.CB) [> 4.440 = 7.401 < 9.621] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)E285.CB) [> 3.012 = 5.020 < 6.526] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)K286.CB) [> 3.141 = 5.235 < 6.806] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)E546.CB) [> 4.645 = 7.742 < 10.065] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)A334.CB) [> 4.487 = 7.479 < 9.722] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)T413.CB) [> 3.478 = 5.796 < 7.535] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G512.CA, (T0547)H527.CB) [> 4.670 = 7.783 < 10.118] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G512.CA, (T0547)K526.CB) [> 2.854 = 4.757 < 6.184] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L511.CB, (T0547)K526.CB) [> 3.997 = 6.662 < 8.660] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D501.CB, (T0547)L511.CB) [> 3.972 = 6.621 < 8.607] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)E278.CB) [> 3.266 = 5.444 < 7.077] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)E278.CB) [> 4.208 = 7.013 < 9.117] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)V277.CB) [> 2.772 = 4.620 < 6.005] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)K286.CB) [> 4.617 = 7.695 < 10.003] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H233.CB, (T0547)V277.CB) [> 4.168 = 6.946 < 9.030] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H233.CB, (T0547)L275.CB) [> 4.480 = 7.467 < 9.707] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F232.CB, (T0547)L275.CB) [> 2.995 = 4.992 < 6.490] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)L275.CB) [> 4.524 = 7.540 < 9.802] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N221.CB, (T0547)K267.CB) [> 4.231 = 7.052 < 9.168] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N221.CB, (T0547)N265.CB) [> 2.731 = 4.551 < 5.917] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)E220.CB) [> 4.376 = 7.293 < 9.480] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I180.CB, (T0547)E220.CB) [> 4.652 = 7.754 < 10.080] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I166.CB, (T0547)E220.CB) [> 4.117 = 6.862 < 8.921] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I157.CB, (T0547)E220.CB) [> 4.615 = 7.691 < 9.999] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K135.CB, (T0547)F144.CB) [> 2.963 = 4.938 < 6.419] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)V436.CB) [> 4.501 = 7.501 < 9.751] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)V277.CB) [> 4.656 = 7.759 < 10.087] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)D494.CB) [> 2.849 = 4.748 < 6.172] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)L497.CB) [> 3.284 = 5.473 < 7.115] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)D494.CB) [> 4.736 = 7.893 < 10.261] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)H500.CB) [> 3.966 = 6.611 < 8.594] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)H500.CB) [> 3.730 = 6.217 < 8.082] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F498.CB, (T0547)K526.CB) [> 3.749 = 6.249 < 8.123] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D494.CB, (T0547)T534.CB) [> 4.451 = 7.418 < 9.643] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D494.CB, (T0547)F530.CB) [> 4.380 = 7.300 < 9.490] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)E535.CB) [> 4.324 = 7.207 < 9.369] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)T534.CB) [> 3.805 = 6.341 < 8.243] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)K526.CB) [> 4.654 = 7.756 < 10.083] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)L420.CB) [> 4.490 = 7.484 < 9.729] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)A553.CB) [> 3.559 = 5.931 < 7.711] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)I551.CB) [> 2.348 = 3.914 < 5.088] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)I550.CB) [> 4.276 = 7.127 < 9.265] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)S490.CB) [> 4.182 = 6.970 < 9.061] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)G549.CA) [> 3.831 = 6.385 < 8.301] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)A553.CB) [> 4.755 = 7.925 < 10.302] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)A553.CB) [> 2.743 = 4.572 < 5.943] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)E552.CB) [> 4.659 = 7.766 < 10.095] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)K414.CB) [> 3.381 = 5.635 < 7.325] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)L394.CB) [> 4.419 = 7.365 < 9.574] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)H379.CB) [> 3.700 = 6.166 < 8.016] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)L378.CB) [> 4.011 = 6.686 < 8.691] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)K415.CB) [> 4.671 = 7.785 < 10.121] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)T409.CB) [> 3.937 = 6.561 < 8.529] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)D564.CB) [> 4.073 = 6.788 < 8.824] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)L563.CB) [> 3.457 = 5.762 < 7.490] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)Y565.CB) [> 4.582 = 7.636 < 9.927] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)K493.CB) [> 3.852 = 6.420 < 8.346] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)Y440.CB) [> 4.733 = 7.888 < 10.255] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)T534.CB) [> 4.656 = 7.759 < 10.087] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)Q433.CB) [> 4.188 = 6.980 < 9.073] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)P426.CB) [> 3.136 = 5.227 < 6.795] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A416.CB, (T0547)K493.CB) [> 3.246 = 5.410 < 7.033] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)K493.CB) [> 3.919 = 6.532 < 8.491] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)S368.CB) [> 3.970 = 6.617 < 8.601] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)D393.CB) [> 3.754 = 6.257 < 8.134] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)V442.CB) [> 4.675 = 7.792 < 10.130] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)P426.CB) [> 4.782 = 7.970 < 10.362] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)S368.CB) [> 4.759 = 7.932 < 10.311] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)I567.CB) [> 4.646 = 7.744 < 10.067] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)I556.CB) [> 4.760 = 7.933 < 10.313] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K286.CB, (T0547)A327.CB) [> 3.436 = 5.726 < 7.444] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E285.CB, (T0547)A327.CB) [> 4.695 = 7.825 < 10.172] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S280.CB, (T0547)L418.CB) [> 4.578 = 7.630 < 9.919] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N253.CB, (T0547)G262.CA) [> 4.766 = 7.943 < 10.326] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)L275.CB) [> 3.846 = 6.410 < 8.333] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)Y279.CB) [> 4.455 = 7.425 < 9.653] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)S280.CB) [> 4.460 = 7.434 < 9.664] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)L408.CB) [> 2.654 = 4.423 < 5.750] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)T390.CB) [> 4.676 = 7.793 < 10.131] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)H379.CB) [> 3.166 = 5.276 < 6.859] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)L378.CB) [> 4.674 = 7.789 < 10.126] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)K423.CB) [> 4.477 = 7.462 < 9.701] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)D380.CB) [> 3.489 = 5.815 < 7.560] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)H379.CB) [> 4.038 = 6.729 < 8.748] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)L378.CB) [> 3.117 = 5.195 < 6.753] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)T390.CB) [> 4.669 = 7.781 < 10.116] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)L385.CB) [> 4.635 = 7.724 < 10.041] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)D380.CB) [> 4.556 = 7.593 < 9.871] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)D562.CB) [> 3.911 = 6.518 < 8.474] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)K423.CB) [> 3.891 = 6.485 < 8.430] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)S381.CB) [> 3.927 = 6.545 < 8.509] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)G549.CA) [> 4.782 = 7.970 < 10.361] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)Q437.CB) [> 4.689 = 7.815 < 10.159] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)G549.CA) [> 4.747 = 7.912 < 10.285] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)K526.CB) [> 4.416 = 7.360 < 9.568] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)H532.CB) [> 4.481 = 7.469 < 9.709] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)H532.CB) [> 4.221 = 7.035 < 9.146] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)N425.CB) [> 3.798 = 6.331 < 8.230] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)G544.CA) [> 3.960 = 6.601 < 8.581] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)K543.CB) [> 3.591 = 5.985 < 7.780] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D316.CB, (T0547)H329.CB) [> 3.570 = 5.950 < 7.736] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D316.CB, (T0547)N328.CB) [> 3.469 = 5.782 < 7.516] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R288.CB, (T0547)K311.CB) [> 4.387 = 7.313 < 9.506] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R288.CB, (T0547)K310.CB) [> 3.350 = 5.584 < 7.259] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L399.CB, (T0547)V502.CB) [> 2.965 = 4.942 < 6.425] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D398.CB, (T0547)D503.CB) [> 4.743 = 7.904 < 10.276] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)D503.CB) [> 3.156 = 5.260 < 6.838] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)V502.CB) [> 3.383 = 5.638 < 7.329] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)L411.CB) [> 3.686 = 6.143 < 7.986] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)H410.CB) [> 2.751 = 4.585 < 5.960] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)F510.CB) [> 3.927 = 6.545 < 8.508] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)D503.CB) [> 4.453 = 7.422 < 9.649] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)V502.CB) [> 2.495 = 4.159 < 5.406] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)D501.CB) [> 3.711 = 6.185 < 8.041] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)R402.CB) [> 4.016 = 6.693 < 8.701] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)R402.CB) [> 3.332 = 5.554 < 7.220] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)F530.CB) [> 4.011 = 6.685 < 8.690] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)L313.CB) [> 3.296 = 5.493 < 7.141] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y63.CB, (T0547)Y104.CB) [> 4.578 = 7.629 < 9.918] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)P315.CB) [> 4.432 = 7.386 < 9.602] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)L313.CB) [> 4.466 = 7.443 < 9.676] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)P315.CB) [> 3.735 = 6.225 < 8.093] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)E314.CB) [> 3.993 = 6.655 < 8.651] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)L313.CB) [> 3.843 = 6.405 < 8.327] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E60.CB, (T0547)Y104.CB) [> 3.244 = 5.407 < 7.029] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)D316.CB) [> 3.534 = 5.890 < 7.658] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)P315.CB) [> 3.198 = 5.329 < 6.928] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K57.CB, (T0547)D316.CB) [> 3.415 = 5.691 < 7.398] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L54.CB, (T0547)D316.CB) [> 2.368 = 3.946 < 5.130] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)D316.CB) [> 4.717 = 7.862 < 10.220] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)L337.CB) [> 3.619 = 6.032 < 7.841] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)P315.CB) [> 4.754 = 7.924 < 10.301] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)D316.CB) [> 4.787 = 7.978 < 10.372] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q226.CB, (T0547)A268.CB) [> 3.604 = 6.007 < 7.809] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)W194.CB, (T0547)L258.CB) [> 4.291 = 7.151 < 9.296] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)W194.CB, (T0547)E210.CB) [> 4.732 = 7.887 < 10.254] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)W194.CB, (T0547)T207.CB) [> 3.263 = 5.439 < 7.071] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)A251.CB) [> 4.759 = 7.931 < 10.310] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)L206.CB) [> 4.720 = 7.867 < 10.227] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)A251.CB) [> 3.115 = 5.191 < 6.749] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)W194.CB) [> 4.649 = 7.749 < 10.074] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)N179.CB) [> 4.613 = 7.689 < 9.996] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)Y545.CB) [> 3.547 = 5.912 < 7.685] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)Y545.CB) [> 4.745 = 7.908 < 10.281] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y83.CB, (T0547)Y104.CB) [> 4.793 = 7.989 < 10.385] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)R439.CB) [> 4.665 = 7.775 < 10.107] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)E507.CB) [> 3.221 = 5.369 < 6.980] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)K506.CB) [> 2.474 = 4.124 < 5.361] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)E505.CB) [> 4.764 = 7.939 < 10.321] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)E507.CB) [> 4.618 = 7.697 < 10.006] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)K506.CB) [> 2.942 = 4.903 < 6.374] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)E505.CB) [> 4.260 = 7.099 < 9.229] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)V504.CB) [> 3.898 = 6.496 < 8.445] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)E507.CB) [> 2.657 = 4.428 < 5.757] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)K506.CB) [> 2.539 = 4.231 < 5.500] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)E505.CB) [> 2.430 = 4.050 < 5.265] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)V504.CB) [> 3.334 = 5.556 < 7.223] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)N508.CB) [> 4.717 = 7.862 < 10.220] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)L497.CB) [> 3.017 = 5.029 < 6.537] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)H500.CB) [> 3.168 = 5.280 < 6.864] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)V504.CB) [> 3.959 = 6.598 < 8.578] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)H500.CB) [> 3.447 = 5.746 < 7.470] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)N541.CB) [> 3.205 = 5.342 < 6.945] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)I540.CB) [> 4.146 = 6.911 < 8.984] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)R439.CB) [> 3.441 = 5.735 < 7.455] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)N541.CB) [> 3.953 = 6.589 < 8.565] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)I540.CB) [> 3.570 = 5.950 < 7.735] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)R439.CB) [> 3.871 = 6.451 < 8.387] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)E542.CB) [> 4.743 = 7.906 < 10.277] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)N541.CB) [> 3.644 = 6.074 < 7.896] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)I540.CB) [> 3.701 = 6.169 < 8.019] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)D501.CB) [> 4.033 = 6.722 < 8.738] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)F530.CB) [> 4.538 = 7.564 < 9.833] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)K526.CB) [> 2.423 = 4.039 < 5.250] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)H527.CB) [> 4.685 = 7.808 < 10.150] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)K526.CB) [> 3.925 = 6.541 < 8.503] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S403.CB, (T0547)D501.CB) [> 4.156 = 6.926 < 9.004] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D401.CB, (T0547)D503.CB) [> 4.734 = 7.890 < 10.257] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D401.CB, (T0547)V502.CB) [> 2.723 = 4.538 < 5.900] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D401.CB, (T0547)D501.CB) [> 4.170 = 6.951 < 9.036] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q400.CB, (T0547)D503.CB) [> 4.766 = 7.944 < 10.327] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q400.CB, (T0547)V502.CB) [> 4.392 = 7.320 < 9.516] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L399.CB, (T0547)D503.CB) [> 3.164 = 5.274 < 6.856] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)N508.CB) [> 4.241 = 7.068 < 9.189] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)E507.CB) [> 3.958 = 6.597 < 8.576] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)N508.CB) [> 4.197 = 6.995 < 9.093] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)N508.CB) [> 3.195 = 5.324 < 6.922] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)K526.CB) [> 3.427 = 5.712 < 7.426] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)K526.CB) [> 3.901 = 6.502 < 8.452] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)N305.CB) [> 3.766 = 6.277 < 8.160] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)G544.CA) [> 4.772 = 7.954 < 10.340] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S449.CB, (T0547)T534.CB) [> 3.562 = 5.936 < 7.717] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S449.CB, (T0547)P533.CB) [> 2.990 = 4.983 < 6.477] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)S555.CB) [> 3.554 = 5.923 < 7.700] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)S555.CB) [> 3.583 = 5.972 < 7.763] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)E552.CB) [> 4.727 = 7.879 < 10.242] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)I551.CB) [> 4.759 = 7.931 < 10.310] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)L563.CB) [> 4.383 = 7.305 < 9.496] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)V547.CB) [> 4.650 = 7.749 < 10.074] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)D562.CB) [> 4.400 = 7.334 < 9.534] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q424.CB, (T0547)Y565.CB) [> 4.623 = 7.705 < 10.016] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K423.CB, (T0547)Y565.CB) [> 3.768 = 6.280 < 8.163] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)Y565.CB) [> 4.769 = 7.949 < 10.334] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)A307.CB) [> 3.255 = 5.425 < 7.052] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)I306.CB) [> 2.829 = 4.716 < 6.130] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)N305.CB) [> 3.942 = 6.570 < 8.541] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)K304.CB) [> 2.956 = 4.927 < 6.405] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)E285.CB) [> 4.747 = 7.912 < 10.286] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)I306.CB) [> 4.298 = 7.163 < 9.312] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L266.CB, (T0547)R288.CB) [> 4.630 = 7.716 < 10.031] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)L313.CB) [> 4.593 = 7.655 < 9.951] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)E285.CB) [> 4.598 = 7.664 < 9.963] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N141.CB, (T0547)E172.CB) [> 3.341 = 5.569 < 7.239] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N141.CB, (T0547)D168.CB) [> 4.729 = 7.881 < 10.245] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)D168.CB) [> 4.703 = 7.839 < 10.191] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)V436.CB) [> 2.483 = 4.138 < 5.379] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)E435.CB) [> 4.006 = 6.677 < 8.681] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)T130.CB) [> 4.740 = 7.900 < 10.271] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)K286.CB) [> 4.119 = 6.865 < 8.925] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)D562.CB) [> 3.227 = 5.379 < 6.993] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)T559.CB) [> 3.964 = 6.607 < 8.589] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)L441.CB) [> 4.670 = 7.783 < 10.118] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)D562.CB) [> 4.617 = 7.695 < 10.003] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)Y565.CB) [> 4.715 = 7.858 < 10.216] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)Y565.CB) [> 3.879 = 6.465 < 8.404] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)Q400.CB) [> 3.203 = 5.338 < 6.940] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)L399.CB) [> 3.396 = 5.660 < 7.358] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)Q400.CB) [> 4.739 = 7.898 < 10.267] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)L399.CB) [> 4.743 = 7.904 < 10.276] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)L399.CB) [> 4.647 = 7.745 < 10.069] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)E542.CB) [> 3.386 = 5.644 < 7.337] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)N541.CB) [> 4.460 = 7.434 < 9.664] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)E548.CB) [> 4.738 = 7.896 < 10.265] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L303.CB, (T0547)F318.CB) [> 2.783 = 4.639 < 6.030] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F301.CB, (T0547)R323.CB) [> 4.788 = 7.981 < 10.375] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V300.CB, (T0547)N328.CB) [> 4.648 = 7.746 < 10.070] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)V547.CB) [> 4.398 = 7.331 < 9.530] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)Y440.CB) [> 4.513 = 7.521 < 9.778] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)R439.CB) [> 3.299 = 5.498 < 7.147] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)Q437.CB) [> 3.033 = 5.055 < 6.571] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)Y440.CB) [> 2.845 = 4.742 < 6.164] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)R439.CB) [> 4.367 = 7.279 < 9.462] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)Y440.CB) [> 4.220 = 7.033 < 9.144] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)D558.CB) [> 4.377 = 7.295 < 9.484] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)I556.CB) [> 3.949 = 6.581 < 8.556] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)S555.CB) [> 3.700 = 6.167 < 8.017] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)R439.CB) [> 3.828 = 6.379 < 8.293] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)R439.CB) [> 4.789 = 7.982 < 10.377] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)Q437.CB) [> 4.252 = 7.087 < 9.213] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)K414.CB) [> 4.757 = 7.928 < 10.306] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)L563.CB) [> 4.383 = 7.305 < 9.496] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q400.CB, (T0547)Q437.CB) [> 4.236 = 7.060 < 9.178] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L399.CB, (T0547)T531.CB) [> 4.522 = 7.537 < 9.799] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D398.CB, (T0547)T531.CB) [> 4.257 = 7.095 < 9.223] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)A536.CB) [> 4.327 = 7.211 < 9.374] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)H532.CB) [> 4.167 = 6.946 < 9.029] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)T531.CB) [> 2.632 = 4.387 < 5.703] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)F530.CB) [> 4.157 = 6.929 < 9.008] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)Q437.CB) [> 4.732 = 7.887 < 10.253] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)E435.CB) [> 4.762 = 7.936 < 10.317] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)V436.CB) [> 4.537 = 7.561 < 9.829] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)E435.CB) [> 2.365 = 3.941 < 5.123] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)D434.CB) [> 4.792 = 7.987 < 10.383] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)G421.CA) [> 4.106 = 6.843 < 8.896] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)H410.CB) [> 4.668 = 7.780 < 10.115] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)Y565.CB) [> 3.976 = 6.627 < 8.615] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)Y440.CB) [> 4.403 = 7.338 < 9.539] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)V436.CB) [> 2.834 = 4.724 < 6.141] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N425.CB, (T0547)Y440.CB) [> 4.080 = 6.800 < 8.840] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N425.CB, (T0547)V436.CB) [> 4.053 = 6.755 < 8.781] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K423.CB, (T0547)T534.CB) [> 4.659 = 7.765 < 10.094] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)T534.CB) [> 3.621 = 6.035 < 7.846] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)A427.CB) [> 4.015 = 6.692 < 8.700] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)F460.CB) [> 4.576 = 7.627 < 9.915] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)E542.CB) [> 4.462 = 7.436 < 9.667] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)E542.CB) [> 4.771 = 7.951 < 10.337] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S403.CB, (T0547)S539.CB) [> 4.008 = 6.680 < 8.684] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q400.CB, (T0547)T531.CB) [> 2.045 = 3.408 < 4.430] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q400.CB, (T0547)E438.CB) [> 3.797 = 6.329 < 8.227] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)I407.CB) [> 4.767 = 7.944 < 10.328] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)A427.CB) [> 4.248 = 7.080 < 9.204] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)A553.CB) [> 4.693 = 7.821 < 10.168] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)Q433.CB) [> 4.748 = 7.914 < 10.288] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I306.CB, (T0547)F318.CB) [> 4.683 = 7.805 < 10.146] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N305.CB, (T0547)F324.CB) [> 4.022 = 6.703 < 8.714] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E285.CB, (T0547)I319.CB) [> 4.779 = 7.965 < 10.354] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)K311.CB) [> 3.894 = 6.490 < 8.437] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)N305.CB) [> 3.212 = 5.354 < 6.960] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)K310.CB) [> 2.660 = 4.433 < 5.763] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)N305.CB) [> 4.589 = 7.648 < 9.942] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)N305.CB) [> 3.689 = 6.148 < 7.992] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G274.CA, (T0547)N305.CB) [> 3.661 = 6.101 < 7.932] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)L313.CB) [> 4.796 = 7.994 < 10.392] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)K310.CB) [> 4.757 = 7.929 < 10.308] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)V397.CB) [> 4.593 = 7.656 < 9.952] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)K423.CB) [> 4.782 = 7.970 < 10.362] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)G421.CA) [> 4.796 = 7.993 < 10.391] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)G421.CA) [> 3.694 = 6.157 < 8.004] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)Q554.CB) [> 4.116 = 6.860 < 8.918] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)A553.CB) [> 3.648 = 6.080 < 7.904] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)A427.CB) [> 4.092 = 6.820 < 8.866] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)L389.CB) [> 4.794 = 7.990 < 10.387] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)E386.CB) [> 4.757 = 7.929 < 10.307] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)D558.CB) [> 4.776 = 7.960 < 10.348] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)A427.CB) [> 4.135 = 6.891 < 8.958] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)L375.CB) [> 4.668 = 7.780 < 10.114] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)T559.CB) [> 4.664 = 7.774 < 10.106] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)L378.CB) [> 4.578 = 7.629 < 9.918] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)F530.CB) [> 3.061 = 5.101 < 6.632] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)A405.CB) [> 4.748 = 7.913 < 10.286] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)L399.CB) [> 4.451 = 7.419 < 9.644] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S490.CB, (T0547)S539.CB) [> 3.048 = 5.080 < 6.604] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S490.CB, (T0547)I538.CB) [> 4.205 = 7.008 < 9.110] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S490.CB, (T0547)I537.CB) [> 3.139 = 5.232 < 6.801] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E488.CB, (T0547)S539.CB) [> 3.051 = 5.086 < 6.611] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E488.CB, (T0547)I538.CB) [> 4.295 = 7.159 < 9.307] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A476.CB, (T0547)V547.CB) [> 4.027 = 6.711 < 8.725] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A476.CB, (T0547)I540.CB) [> 3.482 = 5.803 < 7.544] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A476.CB, (T0547)I489.CB) [> 4.681 = 7.802 < 10.143] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A476.CB, (T0547)E488.CB) [> 3.523 = 5.871 < 7.632] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S475.CB, (T0547)A553.CB) [> 4.755 = 7.925 < 10.302] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S475.CB, (T0547)E488.CB) [> 3.952 = 6.586 < 8.562] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D566.CB, (T0547)L598.CB) [> 3.519 = 5.865 < 7.624] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D566.CB, (T0547)Y597.CB) [> 3.139 = 5.232 < 6.802] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y565.CB, (T0547)L598.CB) [> 2.701 = 4.502 < 5.853] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L563.CB, (T0547)F599.CB) [> 4.010 = 6.684 < 8.689] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L563.CB, (T0547)L598.CB) [> 4.642 = 7.736 < 10.057] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L560.CB, (T0547)F599.CB) [> 3.325 = 5.541 < 7.203] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L560.CB, (T0547)L598.CB) [> 4.377 = 7.295 < 9.484] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T559.CB, (T0547)F599.CB) [> 3.210 = 5.350 < 6.954] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I556.CB, (T0547)F599.CB) [> 3.406 = 5.677 < 7.381] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I550.CB, (T0547)F599.CB) [> 4.653 = 7.755 < 10.082] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K493.CB, (T0547)A536.CB) [> 3.148 = 5.246 < 6.820] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K493.CB, (T0547)H532.CB) [> 3.612 = 6.020 < 7.826] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S492.CB, (T0547)H532.CB) [> 3.954 = 6.590 < 8.566] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y491.CB, (T0547)I537.CB) [> 3.250 = 5.417 < 7.042] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)I489.CB) [> 4.071 = 6.785 < 8.820] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)E488.CB) [> 3.389 = 5.648 < 7.342] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)K493.CB) [> 4.504 = 7.507 < 9.759] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)I489.CB) [> 2.446 = 4.076 < 5.299] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)E488.CB) [> 4.477 = 7.462 < 9.701] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)I489.CB) [> 3.937 = 6.561 < 8.530] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)S492.CB) [> 4.266 = 7.109 < 9.242] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)Y491.CB) [> 3.493 = 5.822 < 7.568] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)S490.CB) [> 3.883 = 6.471 < 8.413] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)I489.CB) [> 3.821 = 6.369 < 8.279] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q437.CB, (T0547)K493.CB) [> 2.776 = 4.627 < 6.015] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q437.CB, (T0547)S492.CB) [> 2.907 = 4.846 < 6.299] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q437.CB, (T0547)Y491.CB) [> 4.002 = 6.669 < 8.670] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q437.CB, (T0547)I489.CB) [> 4.023 = 6.706 < 8.717] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)K493.CB) [> 3.472 = 5.787 < 7.523] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R474.CB, (T0547)E542.CB) [> 4.634 = 7.724 < 10.041] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T473.CB, (T0547)A553.CB) [> 2.689 = 4.482 < 5.827] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T473.CB, (T0547)E552.CB) [> 4.578 = 7.630 < 9.919] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T473.CB, (T0547)E548.CB) [> 4.590 = 7.651 < 9.946] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F444.CB, (T0547)T473.CB) [> 4.763 = 7.938 < 10.319] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)Q554.CB) [> 3.505 = 5.842 < 7.595] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)A553.CB) [> 2.562 = 4.270 < 5.551] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)I551.CB) [> 3.591 = 5.985 < 7.780] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)S475.CB) [> 3.873 = 6.455 < 8.392] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N443.CB, (T0547)T473.CB) [> 3.348 = 5.580 < 7.254] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)Q554.CB) [> 4.502 = 7.503 < 9.755] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)I489.CB) [> 4.245 = 7.075 < 9.197] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)S475.CB) [> 4.640 = 7.733 < 10.053] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)L303.CB) [> 3.167 = 5.278 < 6.862] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)I302.CB) [> 2.896 = 4.827 < 6.275] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)F301.CB) [> 3.689 = 6.148 < 7.993] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)V300.CB) [> 2.970 = 4.951 < 6.436] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)E294.CB) [> 3.946 = 6.577 < 8.551] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I269.CB, (T0547)Y290.CB) [> 3.239 = 5.398 < 7.018] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A268.CB, (T0547)I319.CB) [> 2.932 = 4.886 < 6.352] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A268.CB, (T0547)Y290.CB) [> 4.159 = 6.932 < 9.011] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L266.CB, (T0547)I317.CB) [> 3.754 = 6.256 < 8.133] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N265.CB, (T0547)R288.CB) [> 4.574 = 7.623 < 9.910] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K264.CB, (T0547)L313.CB) [> 4.731 = 7.884 < 10.250] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)K286.CB) [> 4.750 = 7.917 < 10.292] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)Y255.CB) [> 3.734 = 6.223 < 8.089] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)I254.CB) [> 3.364 = 5.607 < 7.289] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)N253.CB) [> 4.471 = 7.452 < 9.687] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V300.CB, (T0547)V325.CB) [> 4.659 = 7.766 < 10.095] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V300.CB, (T0547)F324.CB) [> 2.401 = 4.001 < 5.202] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V300.CB, (T0547)R323.CB) [> 2.377 = 3.962 < 5.151] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V300.CB, (T0547)G322.CA) [> 3.429 = 5.715 < 7.430] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V300.CB, (T0547)S321.CB) [> 2.928 = 4.880 < 6.344] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V299.CB, (T0547)P315.CB) [> 3.322 = 5.538 < 7.199] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V299.CB, (T0547)K311.CB) [> 3.665 = 6.109 < 7.941] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D298.CB, (T0547)K310.CB) [> 2.806 = 4.676 < 6.079] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E294.CB, (T0547)K311.CB) [> 3.990 = 6.651 < 8.646] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y290.CB, (T0547)I317.CB) [> 4.163 = 6.938 < 9.019] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y290.CB, (T0547)P315.CB) [> 4.021 = 6.702 < 8.712] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y290.CB, (T0547)K311.CB) [> 3.753 = 6.254 < 8.131] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y290.CB, (T0547)V299.CB) [> 3.846 = 6.411 < 8.334] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R288.CB, (T0547)E314.CB) [> 2.998 = 4.996 < 6.495] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)E314.CB) [> 4.237 = 7.062 < 9.181] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K286.CB, (T0547)E314.CB) [> 2.946 = 4.910 < 6.383] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N284.CB, (T0547)P315.CB) [> 4.377 = 7.296 < 9.484] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K283.CB, (T0547)P315.CB) [> 3.197 = 5.328 < 6.926] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I145.CB, (T0547)N179.CB) [> 4.419 = 7.364 < 9.574] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)A268.CB) [> 4.266 = 7.110 < 9.243] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)V299.CB) [> 4.421 = 7.369 < 9.579] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)Y295.CB) [> 4.705 = 7.842 < 10.194] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)Y290.CB) [> 4.760 = 7.934 < 10.314] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)K283.CB) [> 4.382 = 7.304 < 9.495] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)F318.CB) [> 4.794 = 7.990 < 10.387] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)P315.CB) [> 3.944 = 6.573 < 8.545] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)Q309.CB) [> 4.473 = 7.455 < 9.691] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)K304.CB) [> 4.157 = 6.928 < 9.006] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)L303.CB) [> 2.358 = 3.931 < 5.110] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)Y290.CB) [> 3.668 = 6.113 < 7.947] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)V299.CB) [> 4.322 = 7.203 < 9.363] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I567.CB, (T0547)F599.CB) [> 3.166 = 5.277 < 6.860] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I567.CB, (T0547)L598.CB) [> 4.467 = 7.445 < 9.679] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P243.CB, (T0547)I254.CB) [> 3.637 = 6.062 < 7.881] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P243.CB, (T0547)N253.CB) [> 3.657 = 6.094 < 7.923] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P243.CB, (T0547)G252.CA) [> 4.194 = 6.990 < 9.087] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H242.CB, (T0547)N253.CB) [> 3.862 = 6.436 < 8.367] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H242.CB, (T0547)G252.CA) [> 3.917 = 6.529 < 8.488] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)I302.CB) [> 2.983 = 4.971 < 6.463] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)F301.CB) [> 3.858 = 6.430 < 8.359] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)F282.CB) [> 4.775 = 7.958 < 10.346] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)K267.CB) [> 4.574 = 7.623 < 9.910] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)L266.CB) [> 4.678 = 7.797 < 10.136] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S202.CB, (T0547)F232.CB) [> 4.123 = 6.872 < 8.934] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L182.CB, (T0547)N265.CB) [> 4.771 = 7.951 < 10.336] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G181.CA, (T0547)N265.CB) [> 4.605 = 7.676 < 9.978] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)L266.CB) [> 4.408 = 7.346 < 9.550] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)S368.CB) [> 4.571 = 7.619 < 9.904] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)K367.CB) [> 3.725 = 6.208 < 8.070] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)Y366.CB) [> 4.599 = 7.666 < 9.965] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)R288.CB) [> 4.428 = 7.380 < 9.594] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)S287.CB) [> 4.701 = 7.836 < 10.186] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)D364.CB) [> 4.673 = 7.788 < 10.125] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)K286.CB) [> 4.710 = 7.850 < 10.205] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)N284.CB) [> 4.680 = 7.800 < 10.139] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S236.CB, (T0547)Q281.CB) [> 4.762 = 7.936 < 10.317] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)V299.CB) [> 3.903 = 6.505 < 8.456] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F227.CB, (T0547)D316.CB) [> 4.745 = 7.908 < 10.281] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E225.CB, (T0547)K264.CB) [> 4.665 = 7.775 < 10.107] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)K260.CB) [> 4.722 = 7.870 < 10.231] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L211.CB, (T0547)K260.CB) [> 4.668 = 7.780 < 10.114] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K203.CB, (T0547)Q237.CB) [> 3.265 = 5.442 < 7.075] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K203.CB, (T0547)S236.CB) [> 3.269 = 5.448 < 7.082] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G199.CA, (T0547)A247.CB) [> 4.606 = 7.677 < 9.981] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K267.CB, (T0547)K311.CB) [> 3.650 = 6.083 < 7.908] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L266.CB, (T0547)Q309.CB) [> 4.784 = 7.973 < 10.364] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R259.CB, (T0547)K310.CB) [> 3.044 = 5.073 < 6.595] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L258.CB, (T0547)K267.CB) [> 4.332 = 7.220 < 9.386] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T256.CB, (T0547)I302.CB) [> 4.652 = 7.754 < 10.080] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T256.CB, (T0547)F301.CB) [> 4.789 = 7.981 < 10.376] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)I302.CB) [> 3.693 = 6.155 < 8.002] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)K267.CB) [> 3.935 = 6.558 < 8.525] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)F301.CB) [> 4.624 = 7.706 < 10.018] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)V299.CB) [> 4.340 = 7.233 < 9.403] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)Q309.CB) [> 4.389 = 7.315 < 9.509] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)V299.CB) [> 4.731 = 7.886 < 10.251] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)Q309.CB) [> 3.599 = 5.998 < 7.797] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)Y290.CB) [> 4.392 = 7.320 < 9.516] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)R288.CB) [> 4.768 = 7.946 < 10.330] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)S287.CB) [> 2.434 = 4.057 < 5.275] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E240.CB, (T0547)Y290.CB) [> 4.284 = 7.141 < 9.283] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)L365.CB) [> 4.178 = 6.963 < 9.052] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)D364.CB) [> 4.720 = 7.866 < 10.226] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)Y363.CB) [> 4.074 = 6.790 < 8.827] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)N201.CB) [> 3.611 = 6.018 < 7.824] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)Y366.CB) [> 4.329 = 7.215 < 9.380] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)L365.CB) [> 3.120 = 5.201 < 6.761] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)A276.CB) [> 3.732 = 6.220 < 8.086] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)A276.CB) [> 4.610 = 7.683 < 9.988] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)G274.CA) [> 4.719 = 7.865 < 10.225] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G190.CA, (T0547)G205.CA) [> 4.136 = 6.894 < 8.962] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A189.CB, (T0547)T239.CB) [> 4.023 = 6.705 < 8.716] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)Q237.CB) [> 3.441 = 5.735 < 7.455] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)I238.CB) [> 3.908 = 6.513 < 8.467] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)T209.CB) [> 4.661 = 7.768 < 10.099] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R185.CB, (T0547)E210.CB) [> 4.790 = 7.984 < 10.379] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N179.CB, (T0547)L266.CB) [> 3.887 = 6.479 < 8.423] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K175.CB, (T0547)E225.CB) [> 2.695 = 4.492 < 5.840] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G199.CA, (T0547)H233.CB) [> 4.330 = 7.216 < 9.381] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G199.CA, (T0547)F232.CB) [> 4.628 = 7.714 < 10.028] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G198.CA, (T0547)K367.CB) [> 4.107 = 6.845 < 8.899] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G198.CA, (T0547)L365.CB) [> 4.178 = 6.963 < 9.052] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G198.CA, (T0547)D364.CB) [> 4.720 = 7.866 < 10.226] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G198.CA, (T0547)Y363.CB) [> 4.611 = 7.685 < 9.990] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S197.CB, (T0547)L365.CB) [> 3.120 = 5.200 < 6.760] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S197.CB, (T0547)I238.CB) [> 4.788 = 7.979 < 10.373] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S197.CB, (T0547)Q237.CB) [> 1.856 = 3.094 < 4.022] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K196.CB, (T0547)Y363.CB) [> 4.219 = 7.031 < 9.141] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K196.CB, (T0547)I238.CB) [> 4.263 = 7.105 < 9.236] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K196.CB, (T0547)Q237.CB) [> 3.600 = 6.001 < 7.801] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I193.CB, (T0547)G235.CA) [> 3.871 = 6.451 < 8.386] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)S368.CB) [> 4.423 = 7.371 < 9.582] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)K367.CB) [> 3.741 = 6.235 < 8.106] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G322.CA, (T0547)I417.CB) [> 4.137 = 6.896 < 8.965] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L303.CB, (T0547)L313.CB) [> 2.757 = 4.595 < 5.973] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L303.CB, (T0547)D312.CB) [> 4.738 = 7.897 < 10.266] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I302.CB, (T0547)I317.CB) [> 3.160 = 5.267 < 6.847] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I302.CB, (T0547)P315.CB) [> 2.838 = 4.729 < 6.148] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I302.CB, (T0547)D312.CB) [> 3.590 = 5.983 < 7.778] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F301.CB, (T0547)D312.CB) [> 3.987 = 6.644 < 8.637] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D298.CB, (T0547)A307.CB) [> 4.771 = 7.952 < 10.338] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N297.CB, (T0547)Q309.CB) [> 3.518 = 5.864 < 7.623] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N297.CB, (T0547)A307.CB) [> 4.568 = 7.613 < 9.897] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)N305.CB) [> 4.516 = 7.526 < 9.784] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)K304.CB) [> 3.179 = 5.298 < 6.887] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L292.CB, (T0547)I319.CB) [> 4.472 = 7.453 < 9.689] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y290.CB, (T0547)F324.CB) [> 4.770 = 7.951 < 10.336] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R288.CB, (T0547)I306.CB) [> 3.496 = 5.827 < 7.576] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R288.CB, (T0547)N305.CB) [> 3.488 = 5.814 < 7.558] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R288.CB, (T0547)K304.CB) [> 4.443 = 7.405 < 9.626] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)N347.CB) [> 3.731 = 6.218 < 8.084] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)M450.CB) [> 4.276 = 7.127 < 9.264] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H329.CB, (T0547)F453.CB) [> 4.086 = 6.810 < 8.853] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)F453.CB) [> 3.987 = 6.646 < 8.639] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)W454.CB) [> 4.512 = 7.520 < 9.776] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)D452.CB) [> 4.550 = 7.584 < 9.859] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)I417.CB) [> 4.496 = 7.494 < 9.742] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V325.CB, (T0547)W454.CB) [> 3.102 = 5.170 < 6.721] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V325.CB, (T0547)F453.CB) [> 2.805 = 4.676 < 6.078] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V325.CB, (T0547)I417.CB) [> 3.280 = 5.466 < 7.106] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)G455.CA) [> 4.561 = 7.602 < 9.882] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)W454.CB) [> 2.224 = 3.707 < 4.820] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)F453.CB) [> 3.994 = 6.657 < 8.654] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)D452.CB) [> 4.463 = 7.439 < 9.671] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)L418.CB) [> 4.716 = 7.860 < 10.218] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G322.CA, (T0547)W454.CB) [> 4.174 = 6.958 < 9.045] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)A296.CB) [> 4.417 = 7.361 < 9.569] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)E294.CB) [> 2.787 = 4.644 < 6.038] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)R293.CB) [> 4.419 = 7.365 < 9.575] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L275.CB, (T0547)Y290.CB) [> 3.569 = 5.949 < 7.734] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G274.CA, (T0547)V300.CB) [> 4.524 = 7.539 < 9.801] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G274.CA, (T0547)V299.CB) [> 2.435 = 4.058 < 5.275] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G274.CA, (T0547)L292.CB) [> 2.783 = 4.639 < 6.031] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)V299.CB) [> 4.065 = 6.775 < 8.808] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G273.CA, (T0547)A296.CB) [> 4.505 = 7.508 < 9.761] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)A307.CB) [> 4.615 = 7.692 < 10.000] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)I306.CB) [> 2.990 = 4.983 < 6.477] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)L303.CB) [> 3.961 = 6.601 < 8.582] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)I302.CB) [> 2.990 = 4.983 < 6.477] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N270.CB, (T0547)V299.CB) [> 3.988 = 6.647 < 8.641] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A268.CB, (T0547)D312.CB) [> 4.524 = 7.540 < 9.802] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K267.CB, (T0547)D312.CB) [> 3.453 = 5.755 < 7.481] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R288.CB, (T0547)N297.CB) [> 2.970 = 4.950 < 6.436] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K286.CB, (T0547)K304.CB) [> 3.711 = 6.185 < 8.040] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E285.CB, (T0547)S368.CB) [> 4.183 = 6.972 < 9.063] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N284.CB, (T0547)S368.CB) [> 4.198 = 6.997 < 9.096] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N284.CB, (T0547)Y366.CB) [> 2.586 = 4.310 < 5.603] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K283.CB, (T0547)S372.CB) [> 3.220 = 5.366 < 6.976] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K283.CB, (T0547)P371.CB) [> 4.422 = 7.370 < 9.581] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K283.CB, (T0547)K370.CB) [> 3.334 = 5.556 < 7.223] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K283.CB, (T0547)K367.CB) [> 4.282 = 7.137 < 9.278] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S280.CB, (T0547)P371.CB) [> 4.474 = 7.456 < 9.693] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S280.CB, (T0547)I369.CB) [> 3.346 = 5.577 < 7.250] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E278.CB, (T0547)A416.CB) [> 4.797 = 7.995 < 10.393] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E278.CB, (T0547)N289.CB) [> 3.319 = 5.531 < 7.191] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E278.CB, (T0547)R288.CB) [> 3.780 = 6.300 < 8.190] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)V299.CB) [> 3.274 = 5.456 < 7.093] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)D298.CB) [> 3.022 = 5.037 < 6.548] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)N297.CB) [> 4.636 = 7.727 < 10.045] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)L292.CB) [> 3.780 = 6.301 < 8.191] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)K76.CB) [> 3.717 = 6.194 < 8.052] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K57.CB, (T0547)T559.CB) [> 4.382 = 7.304 < 9.495] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)L563.CB) [> 3.578 = 5.963 < 7.752] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)D562.CB) [> 3.643 = 6.072 < 7.893] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)T559.CB) [> 2.932 = 4.886 < 6.352] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)Q437.CB) [> 4.583 = 7.638 < 9.929] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)V436.CB) [> 4.752 = 7.920 < 10.296] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)F514.CB) [> 4.404 = 7.340 < 9.542] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I55.CB, (T0547)E438.CB) [> 4.753 = 7.921 < 10.298] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)T559.CB) [> 2.206 = 3.677 < 4.780] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)D558.CB) [> 4.775 = 7.959 < 10.346] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)R439.CB) [> 4.338 = 7.230 < 9.400] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)D434.CB) [> 4.694 = 7.823 < 10.170] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)Q433.CB) [> 4.762 = 7.937 < 10.318] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)G455.CA) [> 3.092 = 5.153 < 6.699] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F79.CB, (T0547)A307.CB) [> 4.524 = 7.541 < 9.803] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)Q309.CB) [> 4.689 = 7.815 < 10.160] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G78.CA, (T0547)E308.CB) [> 4.610 = 7.684 < 9.989] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)D312.CB) [> 3.535 = 5.892 < 7.659] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G77.CA, (T0547)E308.CB) [> 4.360 = 7.266 < 9.446] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K76.CB, (T0547)E308.CB) [> 4.292 = 7.153 < 9.298] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)I317.CB) [> 4.409 = 7.348 < 9.552] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)A307.CB) [> 4.670 = 7.784 < 10.119] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)K304.CB) [> 3.426 = 5.710 < 7.423] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)L303.CB) [> 3.087 = 5.145 < 6.689] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N67.CB, (T0547)F301.CB) [> 4.767 = 7.945 < 10.328] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F66.CB, (T0547)Y75.CB) [> 3.677 = 6.129 < 7.967] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)R288.CB) [> 3.629 = 6.048 < 7.862] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)Y75.CB) [> 4.797 = 7.995 < 10.393] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G64.CA, (T0547)Y75.CB) [> 3.230 = 5.383 < 6.997] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)K286.CB) [> 3.570 = 5.951 < 7.736] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)G77.CA) [> 4.150 = 6.917 < 8.992] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)Q437.CB) [> 3.903 = 6.504 < 8.455] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)A431.CB) [> 3.006 = 5.010 < 6.513] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)E548.CB) [> 4.558 = 7.596 < 9.875] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)Y509.CB) [> 4.700 = 7.834 < 10.184] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)E457.CB) [> 4.687 = 7.811 < 10.155] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L48.CB, (T0547)E435.CB) [> 4.112 = 6.853 < 8.909] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)L583.CB) [> 4.700 = 7.833 < 10.183] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)L563.CB) [> 4.786 = 7.976 < 10.369] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)T559.CB) [> 4.349 = 7.248 < 9.422] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)K543.CB) [> 4.740 = 7.900 < 10.270] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)R439.CB) [> 4.535 = 7.558 < 9.825] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)Q433.CB) [> 3.535 = 5.891 < 7.659] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)I432.CB) [> 3.195 = 5.325 < 6.923] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)E438.CB) [> 4.651 = 7.751 < 10.076] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)Q433.CB) [> 3.228 = 5.381 < 6.995] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)V547.CB) [> 4.281 = 7.136 < 9.276] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)Q437.CB) [> 3.781 = 6.301 < 8.191] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)A431.CB) [> 4.240 = 7.066 < 9.186] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)Y545.CB) [> 4.402 = 7.337 < 9.538] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)A268.CB) [> 4.603 = 7.671 < 9.972] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I129.CB, (T0547)E148.CB) [> 4.752 = 7.921 < 10.297] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A127.CB, (T0547)F227.CB) [> 4.535 = 7.558 < 9.825] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A127.CB, (T0547)A147.CB) [> 4.300 = 7.167 < 9.317] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y122.CB, (T0547)Q554.CB) [> 4.580 = 7.633 < 9.922] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A119.CB, (T0547)A147.CB) [> 4.787 = 7.979 < 10.373] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L118.CB, (T0547)Q554.CB) [> 2.175 = 3.625 < 4.712] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L117.CB, (T0547)E148.CB) [> 4.611 = 7.685 < 9.991] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E115.CB, (T0547)Q554.CB) [> 4.170 = 6.950 < 9.035] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A114.CB, (T0547)Q554.CB) [> 4.645 = 7.741 < 10.064] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A114.CB, (T0547)F144.CB) [> 4.116 = 6.859 < 8.917] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A110.CB, (T0547)G143.CA) [> 4.603 = 7.672 < 9.974] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L100.CB, (T0547)L563.CB) [> 3.704 = 6.174 < 8.026] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K99.CB, (T0547)L563.CB) [> 3.427 = 5.711 < 7.424] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F174.CB, (T0547)E225.CB) [> 4.725 = 7.875 < 10.238] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F174.CB, (T0547)N221.CB) [> 4.016 = 6.693 < 8.701] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A165.CB, (T0547)F174.CB) [> 4.716 = 7.860 < 10.218] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)M149.CB, (T0547)P178.CB) [> 4.793 = 7.989 < 10.385] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G143.CA, (T0547)N152.CB) [> 4.487 = 7.478 < 9.722] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)K175.CB) [> 4.733 = 7.888 < 10.254] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)R173.CB) [> 3.723 = 6.206 < 8.067] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F134.CB, (T0547)I166.CB) [> 3.905 = 6.508 < 8.460] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G133.CA, (T0547)G205.CA) [> 4.770 = 7.950 < 10.335] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G133.CA, (T0547)G159.CA) [> 4.755 = 7.925 < 10.302] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)K203.CB) [> 4.796 = 7.993 < 10.391] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V131.CB, (T0547)I142.CB) [> 4.775 = 7.958 < 10.345] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)V442.CB) [> 4.680 = 7.801 < 10.141] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)L441.CB) [> 4.496 = 7.493 < 9.741] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)Q554.CB) [> 4.400 = 7.333 < 9.533] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)V547.CB) [> 3.354 = 5.590 < 7.267] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)G512.CA) [> 4.792 = 7.987 < 10.383] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)E457.CB) [> 4.148 = 6.913 < 8.987] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)Q554.CB) [> 2.672 = 4.453 < 5.789] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)Q458.CB) [> 4.422 = 7.370 < 9.582] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q89.CB, (T0547)E457.CB) [> 4.075 = 6.792 < 8.829] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)E457.CB) [> 2.517 = 4.195 < 5.454] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)G455.CA) [> 4.710 = 7.850 < 10.205] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N88.CB, (T0547)G421.CA) [> 4.770 = 7.950 < 10.335] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)Q458.CB) [> 4.794 = 7.990 < 10.387] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)E457.CB) [> 3.696 = 6.160 < 8.007] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N96.CB, (T0547)L563.CB) [> 4.160 = 6.933 < 9.012] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N96.CB, (T0547)S485.CB) [> 3.500 = 5.833 < 7.583] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N96.CB, (T0547)D434.CB) [> 4.696 = 7.827 < 10.175] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K95.CB, (T0547)S485.CB) [> 4.065 = 6.774 < 8.807] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)V547.CB) [> 4.271 = 7.118 < 9.253] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)L441.CB) [> 4.346 = 7.243 < 9.416] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)V436.CB) [> 4.167 = 6.944 < 9.028] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)I432.CB) [> 4.535 = 7.559 < 9.826] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F93.CB, (T0547)K415.CB) [> 4.731 = 7.885 < 10.250] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)V547.CB) [> 3.029 = 5.049 < 6.564] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)S485.CB) [> 3.727 = 6.212 < 8.076] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)T482.CB) [> 3.447 = 5.746 < 7.469] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)L441.CB) [> 3.265 = 5.442 < 7.075] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)V436.CB) [> 4.339 = 7.231 < 9.400] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)I432.CB) [> 4.216 = 7.027 < 9.135] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)Q554.CB) [> 4.241 = 7.069 < 9.190] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)V547.CB) [> 4.267 = 7.112 < 9.246] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)S445.CB) [> 4.653 = 7.756 < 10.082] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)M450.CB) [> 3.882 = 6.469 < 8.410] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)S555.CB) [> 3.874 = 6.457 < 8.394] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)A553.CB) [> 3.732 = 6.219 < 8.085] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)E552.CB) [> 3.921 = 6.535 < 8.495] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)I551.CB) [> 2.223 = 3.705 < 4.816] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)I550.CB) [> 3.709 = 6.181 < 8.035] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)S475.CB) [> 3.164 = 5.273 < 6.855] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)W454.CB) [> 4.147 = 6.912 < 8.986] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)P451.CB) [> 4.023 = 6.705 < 8.716] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)L446.CB) [> 4.722 = 7.870 < 10.232] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)T534.CB) [> 4.589 = 7.648 < 9.943] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)P451.CB) [> 4.243 = 7.072 < 9.193] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)L446.CB) [> 3.896 = 6.493 < 8.440] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)S445.CB) [> 2.151 = 3.584 < 4.660] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)K589.CB) [> 4.719 = 7.865 < 10.225] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)A553.CB) [> 4.799 = 7.998 < 10.397] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I432.CB, (T0547)L441.CB) [> 2.578 = 4.297 < 5.586] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)I550.CB) [> 3.647 = 6.078 < 7.902] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)A536.CB) [> 3.929 = 6.548 < 8.513] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)E535.CB) [> 3.130 = 5.217 < 6.782] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)I481.CB) [> 3.939 = 6.565 < 8.534] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)D480.CB) [> 3.478 = 5.797 < 7.536] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)S477.CB) [> 3.783 = 6.305 < 8.196] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)A476.CB) [> 3.418 = 5.698 < 7.407] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)F453.CB) [> 4.218 = 7.030 < 9.139] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)S449.CB) [> 1.922 = 3.203 < 4.163] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)L583.CB) [> 2.773 = 4.621 < 6.007] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)K582.CB) [> 3.537 = 5.894 < 7.663] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)I551.CB) [> 2.752 = 4.587 < 5.963] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)I550.CB) [> 4.309 = 7.181 < 9.335] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)R474.CB) [> 3.333 = 5.555 < 7.221] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)P451.CB) [> 4.616 = 7.694 < 10.002] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)R474.CB) [> 4.777 = 7.962 < 10.351] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)F460.CB) [> 4.568 = 7.613 < 9.897] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)D434.CB) [> 4.307 = 7.179 < 9.332] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)A553.CB) [> 3.404 = 5.673 < 7.375] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)I538.CB) [> 4.134 = 6.890 < 8.958] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)A536.CB) [> 3.686 = 6.143 < 7.985] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)D480.CB) [> 3.915 = 6.524 < 8.482] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)A476.CB) [> 4.412 = 7.354 < 9.560] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)V442.CB) [> 4.716 = 7.860 < 10.218] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)P451.CB) [> 4.611 = 7.684 < 9.990] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)M450.CB) [> 3.413 = 5.689 < 7.396] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)M450.CB) [> 3.928 = 6.547 < 8.511] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V397.CB, (T0547)T409.CB) [> 4.577 = 7.628 < 9.917] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F392.CB, (T0547)D401.CB) [> 4.293 = 7.154 < 9.300] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L389.CB, (T0547)A427.CB) [> 3.693 = 6.154 < 8.000] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S387.CB, (T0547)L429.CB) [> 4.196 = 6.994 < 9.092] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)S403.CB) [> 4.425 = 7.375 < 9.587] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)W454.CB) [> 3.099 = 5.164 < 6.714] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)P451.CB) [> 4.682 = 7.804 < 10.145] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)P451.CB) [> 4.442 = 7.403 < 9.624] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N425.CB, (T0547)W454.CB) [> 3.249 = 5.416 < 7.041] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q424.CB, (T0547)I551.CB) [> 4.615 = 7.691 < 9.998] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q424.CB, (T0547)W454.CB) [> 3.268 = 5.447 < 7.081] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K423.CB, (T0547)M450.CB) [> 3.412 = 5.687 < 7.393] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K423.CB, (T0547)S445.CB) [> 4.689 = 7.815 < 10.160] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)A553.CB) [> 3.470 = 5.783 < 7.518] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)E552.CB) [> 4.016 = 6.694 < 8.702] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)F460.CB) [> 3.086 = 5.143 < 6.686] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)A553.CB) [> 3.545 = 5.908 < 7.681] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)F460.CB) [> 3.718 = 6.196 < 8.055] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)F460.CB) [> 3.736 = 6.227 < 8.096] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)A553.CB) [> 4.364 = 7.273 < 9.455] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)E548.CB) [> 4.637 = 7.729 < 10.047] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)A536.CB) [> 3.793 = 6.321 < 8.217] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G512.CA, (T0547)A553.CB) [> 4.469 = 7.449 < 9.684] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G512.CA, (T0547)E552.CB) [> 4.712 = 7.854 < 10.210] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G512.CA, (T0547)I551.CB) [> 2.821 = 4.701 < 6.112] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G512.CA, (T0547)I550.CB) [> 3.534 = 5.889 < 7.656] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y509.CB, (T0547)E552.CB) [> 3.687 = 6.145 < 7.989] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y509.CB, (T0547)I551.CB) [> 4.225 = 7.042 < 9.155] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y509.CB, (T0547)I550.CB) [> 3.110 = 5.183 < 6.737] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y509.CB, (T0547)S539.CB) [> 4.444 = 7.407 < 9.629] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y509.CB, (T0547)I538.CB) [> 3.510 = 5.849 < 7.604] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N508.CB, (T0547)E552.CB) [> 4.098 = 6.830 < 8.879] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I481.CB, (T0547)L560.CB) [> 4.081 = 6.802 < 8.842] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I481.CB, (T0547)T559.CB) [> 2.673 = 4.455 < 5.792] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I481.CB, (T0547)D558.CB) [> 3.130 = 5.217 < 6.783] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I481.CB, (T0547)L557.CB) [> 3.217 = 5.362 < 6.971] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I538.CB, (T0547)A553.CB) [> 4.173 = 6.955 < 9.041] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A536.CB, (T0547)E546.CB) [> 4.220 = 7.033 < 9.143] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E535.CB, (T0547)L583.CB) [> 2.754 = 4.589 < 5.966] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E535.CB, (T0547)K582.CB) [> 3.950 = 6.583 < 8.558] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E535.CB, (T0547)E546.CB) [> 3.920 = 6.533 < 8.494] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L515.CB, (T0547)E548.CB) [> 4.040 = 6.734 < 8.754] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L515.CB, (T0547)K543.CB) [> 4.689 = 7.815 < 10.160] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L515.CB, (T0547)E542.CB) [> 3.154 = 5.257 < 6.834] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F514.CB, (T0547)I550.CB) [> 4.178 = 6.963 < 9.052] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F514.CB, (T0547)E548.CB) [> 3.136 = 5.227 < 6.795] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F460.CB, (T0547)Y509.CB) [> 3.654 = 6.091 < 7.918] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F460.CB, (T0547)N508.CB) [> 3.460 = 5.767 < 7.497] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E457.CB, (T0547)A553.CB) [> 3.436 = 5.726 < 7.444] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G455.CA, (T0547)D469.CB) [> 3.624 = 6.040 < 7.852] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)W454.CB, (T0547)E470.CB) [> 3.488 = 5.814 < 7.558] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F453.CB, (T0547)D469.CB) [> 4.547 = 7.578 < 9.851] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F453.CB, (T0547)R467.CB) [> 4.295 = 7.158 < 9.306] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P451.CB, (T0547)R467.CB) [> 3.756 = 6.260 < 8.138] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)S445.CB) [> 2.741 = 4.568 < 5.938] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)Q448.CB) [> 3.231 = 5.385 < 7.000] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)F447.CB) [> 4.154 = 6.923 < 9.000] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I432.CB, (T0547)S449.CB) [> 4.638 = 7.730 < 10.049] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D480.CB, (T0547)L563.CB) [> 4.558 = 7.597 < 9.876] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D480.CB, (T0547)L560.CB) [> 3.092 = 5.154 < 6.700] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D480.CB, (T0547)T559.CB) [> 3.063 = 5.105 < 6.636] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S475.CB, (T0547)L583.CB) [> 2.751 = 4.585 < 5.961] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S475.CB, (T0547)K582.CB) [> 3.766 = 6.277 < 8.160] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S475.CB, (T0547)G549.CA) [> 3.494 = 5.824 < 7.571] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S475.CB, (T0547)V547.CB) [> 3.961 = 6.602 < 8.582] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S475.CB, (T0547)I538.CB) [> 4.154 = 6.923 < 9.000] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S475.CB, (T0547)I537.CB) [> 3.363 = 5.605 < 7.287] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I462.CB, (T0547)A553.CB) [> 4.527 = 7.544 < 9.807] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I462.CB, (T0547)E552.CB) [> 3.679 = 6.131 < 7.970] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I462.CB, (T0547)I551.CB) [> 4.194 = 6.989 < 9.086] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I462.CB, (T0547)I550.CB) [> 3.061 = 5.102 < 6.633] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I462.CB, (T0547)G512.CA) [> 2.797 = 4.661 < 6.059] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P461.CB, (T0547)G512.CA) [> 4.793 = 7.989 < 10.385] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F460.CB, (T0547)A553.CB) [> 3.810 = 6.350 < 8.254] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F460.CB, (T0547)G512.CA) [> 3.134 = 5.224 < 6.791] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)N404.CB) [> 4.129 = 6.881 < 8.946] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)H410.CB) [> 4.481 = 7.468 < 9.708] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)L408.CB) [> 2.674 = 4.457 < 5.794] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)I407.CB) [> 4.101 = 6.834 < 8.885] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)H410.CB) [> 2.138 = 3.564 < 4.633] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)L408.CB) [> 4.698 = 7.831 < 10.180] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)I407.CB) [> 4.672 = 7.787 < 10.123] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)I412.CB) [> 2.683 = 4.472 < 5.814] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)L411.CB) [> 3.622 = 6.037 < 7.848] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)H410.CB) [> 3.008 = 5.013 < 6.517] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)T409.CB) [> 4.732 = 7.886 < 10.252] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)H379.CB) [> 2.729 = 4.548 < 5.912] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)L378.CB) [> 4.573 = 7.622 < 9.908] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)I412.CB) [> 4.754 = 7.924 < 10.301] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)F460.CB) [> 4.758 = 7.930 < 10.309] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)L456.CB) [> 4.775 = 7.958 < 10.346] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)I432.CB) [> 3.021 = 5.035 < 6.545] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)L420.CB) [> 4.009 = 6.682 < 8.687] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)N459.CB) [> 3.767 = 6.279 < 8.162] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)H384.CB) [> 3.332 = 5.553 < 7.219] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q354.CB, (T0547)Y363.CB) [> 3.192 = 5.320 < 6.916] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)T534.CB) [> 3.796 = 6.327 < 8.225] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)K423.CB) [> 4.579 = 7.632 < 9.922] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)R474.CB) [> 3.799 = 6.332 < 8.232] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)I432.CB) [> 4.318 = 7.197 < 9.356] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)L408.CB) [> 4.663 = 7.772 < 10.103] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)I407.CB) [> 4.297 = 7.162 < 9.310] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)E406.CB) [> 3.535 = 5.891 < 7.658] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L339.CB, (T0547)H379.CB) [> 4.327 = 7.211 < 9.375] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)R474.CB) [> 4.796 = 7.993 < 10.391] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)A431.CB) [> 4.642 = 7.736 < 10.057] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)D393.CB) [> 4.466 = 7.444 < 9.677] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)T390.CB) [> 4.333 = 7.222 < 9.388] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)P371.CB) [> 4.753 = 7.922 < 10.299] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)Q354.CB) [> 4.782 = 7.971 < 10.362] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)A374.CB) [> 4.602 = 7.670 < 9.970] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)T534.CB) [> 4.602 = 7.669 < 9.970] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)R474.CB) [> 4.014 = 6.689 < 8.696] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)M450.CB) [> 4.015 = 6.691 < 8.698] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)I432.CB) [> 4.752 = 7.920 < 10.296] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)F392.CB) [> 4.754 = 7.924 < 10.301] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)S368.CB) [> 4.554 = 7.590 < 9.867] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)M450.CB) [> 4.793 = 7.989 < 10.386] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)S372.CB) [> 4.666 = 7.776 < 10.109] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)K348.CB) [> 4.292 = 7.153 < 9.299] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)L411.CB) [> 3.545 = 5.908 < 7.680] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)H410.CB) [> 4.462 = 7.437 < 9.668] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)T409.CB) [> 3.048 = 5.080 < 6.604] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)L375.CB) [> 4.449 = 7.415 < 9.640] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)T413.CB) [> 4.178 = 6.963 < 9.052] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)I412.CB) [> 2.629 = 4.381 < 5.696] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)L411.CB) [> 3.542 = 5.904 < 7.675] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A345.CB, (T0547)V397.CB) [> 4.567 = 7.611 < 9.895] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E343.CB, (T0547)G395.CA) [> 3.325 = 5.542 < 7.204] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E343.CB, (T0547)L394.CB) [> 3.705 = 6.176 < 8.029] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E343.CB, (T0547)D393.CB) [> 3.870 = 6.450 < 8.385] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)R402.CB) [> 4.313 = 7.189 < 9.346] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)D401.CB) [> 2.575 = 4.292 < 5.580] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)D398.CB) [> 2.345 = 3.908 < 5.081] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)V397.CB) [> 4.788 = 7.981 < 10.375] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)G395.CA) [> 4.281 = 7.135 < 9.276] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)L394.CB) [> 4.725 = 7.875 < 10.238] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q342.CB, (T0547)D380.CB) [> 4.506 = 7.510 < 9.763] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)V397.CB) [> 3.448 = 5.747 < 7.471] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)T390.CB) [> 4.075 = 6.791 < 8.828] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)I388.CB) [> 4.347 = 7.246 < 9.419] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)P451.CB) [> 4.767 = 7.945 < 10.328] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)M450.CB) [> 4.763 = 7.939 < 10.320] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)I407.CB) [> 4.417 = 7.361 < 9.570] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)E406.CB) [> 4.060 = 6.767 < 8.797] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)V397.CB) [> 4.626 = 7.711 < 10.024] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)L394.CB) [> 4.669 = 7.781 < 10.116] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)I388.CB) [> 4.068 = 6.780 < 8.814] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)D452.CB) [> 3.188 = 5.314 < 6.908] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)P451.CB) [> 1.794 = 2.990 < 3.886] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)M450.CB) [> 3.192 = 5.320 < 6.916] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)I417.CB) [> 4.694 = 7.824 < 10.171] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)D401.CB) [> 4.451 = 7.418 < 9.643] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)Q400.CB) [> 3.982 = 6.636 < 8.627] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)L399.CB) [> 1.841 = 3.068 < 3.988] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H384.CB, (T0547)R402.CB) [> 4.435 = 7.391 < 9.608] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)R402.CB) [> 4.386 = 7.311 < 9.504] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D380.CB, (T0547)D398.CB) [> 3.058 = 5.096 < 6.625] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)L411.CB) [> 4.525 = 7.541 < 9.803] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)D393.CB) [> 4.534 = 7.557 < 9.824] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)E406.CB) [> 3.330 = 5.550 < 7.215] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)N404.CB) [> 4.662 = 7.770 < 10.101] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)L399.CB) [> 2.059 = 3.432 < 4.461] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)T409.CB) [> 3.985 = 6.642 < 8.634] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N373.CB, (T0547)H410.CB) [> 4.291 = 7.152 < 9.297] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N373.CB, (T0547)T409.CB) [> 4.242 = 7.070 < 9.191] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N373.CB, (T0547)L399.CB) [> 4.404 = 7.340 < 9.543] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)L399.CB) [> 3.450 = 5.749 < 7.474] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)Y396.CB) [> 4.282 = 7.137 < 9.279] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)Y545.CB) [> 4.760 = 7.934 < 10.314] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)I407.CB) [> 3.042 = 5.070 < 6.591] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)M450.CB) [> 3.410 = 5.683 < 7.388] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)A416.CB) [> 4.241 = 7.068 < 9.189] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)H384.CB) [> 4.641 = 7.734 < 10.054] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)N459.CB) [> 3.324 = 5.539 < 7.201] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)Q458.CB) [> 4.047 = 6.745 < 8.768] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)D452.CB) [> 4.788 = 7.981 < 10.375] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)L429.CB) [> 4.770 = 7.949 < 10.334] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)D428.CB) [> 4.702 = 7.836 < 10.187] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)L411.CB) [> 4.424 = 7.373 < 9.585] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)T534.CB) [> 3.035 = 5.058 < 6.575] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)R474.CB) [> 4.010 = 6.684 < 8.689] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)M450.CB) [> 4.007 = 6.678 < 8.682] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)A431.CB) [> 2.923 = 4.872 < 6.333] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)Q424.CB) [> 4.766 = 7.943 < 10.325] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)T390.CB) [> 4.714 = 7.857 < 10.214] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)H384.CB) [> 3.937 = 6.562 < 8.530] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)I369.CB) [> 3.260 = 5.433 < 7.063] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)R474.CB) [> 4.582 = 7.636 < 9.927] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)L399.CB) [> 3.642 = 6.069 < 7.890] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)L389.CB) [> 4.314 = 7.189 < 9.346] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)Y396.CB) [> 4.696 = 7.827 < 10.175] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)L394.CB) [> 4.490 = 7.483 < 9.727] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)D393.CB) [> 4.635 = 7.725 < 10.043] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)L391.CB) [> 4.490 = 7.483 < 9.727] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)L456.CB) [> 2.351 = 3.918 < 5.094] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)G455.CA) [> 2.945 = 4.908 < 6.380] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)F453.CB) [> 3.966 = 6.611 < 8.594] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)D452.CB) [> 2.610 = 4.351 < 5.656] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)P451.CB) [> 3.843 = 6.406 < 8.327] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)M450.CB) [> 2.617 = 4.362 < 5.671] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)D383.CB) [> 4.767 = 7.945 < 10.328] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)L456.CB) [> 4.797 = 7.995 < 10.394] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)G455.CA) [> 3.515 = 5.858 < 7.616] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)D452.CB) [> 3.678 = 6.129 < 7.968] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)L419.CB) [> 3.985 = 6.641 < 8.633] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)I412.CB) [> 4.743 = 7.904 < 10.276] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)Q424.CB) [> 4.075 = 6.791 < 8.828] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)K423.CB) [> 3.823 = 6.371 < 8.282] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)I382.CB) [> 4.758 = 7.929 < 10.308] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)Q424.CB) [> 4.032 = 6.720 < 8.736] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)K423.CB) [> 4.134 = 6.891 < 8.958] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)L420.CB) [> 4.078 = 6.797 < 8.836] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)L385.CB) [> 3.560 = 5.933 < 7.713] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P371.CB, (T0547)S381.CB) [> 3.479 = 5.799 < 7.538] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)I382.CB) [> 4.302 = 7.170 < 9.321] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)D383.CB) [> 3.832 = 6.386 < 8.302] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)L385.CB) [> 4.456 = 7.426 < 9.654] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)Q424.CB) [> 4.087 = 6.811 < 8.855] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)K423.CB) [> 3.872 = 6.453 < 8.388] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)K423.CB) [> 4.690 = 7.817 < 10.162] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)G421.CA) [> 4.778 = 7.963 < 10.352] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)A431.CB) [> 3.502 = 5.836 < 7.587] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)P426.CB) [> 3.922 = 6.537 < 8.498] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)T559.CB) [> 4.087 = 6.811 < 8.854] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)G549.CA) [> 4.052 = 6.753 < 8.779] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)L560.CB) [> 3.780 = 6.300 < 8.191] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I417.CB, (T0547)T559.CB) [> 3.395 = 5.659 < 7.356] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)L446.CB) [> 4.446 = 7.411 < 9.634] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E406.CB, (T0547)N541.CB) [> 4.643 = 7.739 < 10.061] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A405.CB, (T0547)N541.CB) [> 4.383 = 7.305 < 9.496] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V397.CB, (T0547)E406.CB) [> 4.697 = 7.828 < 10.177] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)E535.CB) [> 4.649 = 7.748 < 10.073] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G395.CA, (T0547)L408.CB) [> 4.684 = 7.807 < 10.150] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L394.CB, (T0547)E406.CB) [> 4.671 = 7.785 < 10.120] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L394.CB, (T0547)S403.CB) [> 4.270 = 7.117 < 9.252] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H379.CB, (T0547)I407.CB) [> 4.654 = 7.757 < 10.084] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)L408.CB) [> 4.790 = 7.983 < 10.378] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)K415.CB) [> 3.593 = 5.988 < 7.784] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)K423.CB) [> 4.071 = 6.784 < 8.819] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I306.CB, (T0547)E320.CB) [> 3.982 = 6.636 < 8.627] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)R323.CB) [> 2.902 = 4.836 < 6.287] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)G322.CA) [> 3.532 = 5.887 < 7.653] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)E320.CB) [> 3.828 = 6.380 < 8.294] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E294.CB, (T0547)P315.CB) [> 4.684 = 7.807 < 10.149] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)A307.CB) [> 4.171 = 6.951 < 9.037] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)I306.CB) [> 3.144 = 5.240 < 6.811] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E285.CB, (T0547)P315.CB) [> 3.954 = 6.590 < 8.567] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A276.CB, (T0547)P315.CB) [> 4.722 = 7.870 < 10.231] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y255.CB, (T0547)K264.CB) [> 2.976 = 4.959 < 6.447] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)A268.CB) [> 4.631 = 7.718 < 10.034] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)N305.CB) [> 4.738 = 7.897 < 10.266] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)S287.CB) [> 3.668 = 6.113 < 7.947] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T130.CB, (T0547)G143.CA) [> 4.621 = 7.701 < 10.011] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)S287.CB) [> 4.725 = 7.875 < 10.237] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)T559.CB) [> 4.740 = 7.900 < 10.270] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)Q433.CB) [> 4.635 = 7.724 < 10.042] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)I432.CB) [> 4.602 = 7.670 < 9.971] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)A431.CB) [> 3.607 = 6.012 < 7.815] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)E561.CB) [> 4.698 = 7.830 < 10.179] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)L560.CB) [> 4.601 = 7.668 < 9.969] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)F447.CB) [> 4.625 = 7.708 < 10.020] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)V397.CB) [> 4.453 = 7.421 < 9.647] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)L394.CB) [> 4.481 = 7.468 < 9.709] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)F392.CB) [> 4.516 = 7.527 < 9.786] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)I556.CB) [> 4.627 = 7.712 < 10.026] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)L420.CB) [> 4.138 = 6.896 < 8.965] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H329.CB, (T0547)I551.CB) [> 4.740 = 7.900 < 10.270] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)I550.CB) [> 4.677 = 7.795 < 10.134] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A326.CB, (T0547)I432.CB) [> 3.603 = 6.005 < 7.806] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I306.CB, (T0547)R323.CB) [> 4.423 = 7.372 < 9.583] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H233.CB, (T0547)N289.CB) [> 4.304 = 7.174 < 9.326] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F232.CB, (T0547)N289.CB) [> 2.800 = 4.666 < 6.066] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)N289.CB) [> 3.601 = 6.002 < 7.802] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)R288.CB) [> 2.972 = 4.953 < 6.439] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H231.CB, (T0547)S287.CB) [> 3.735 = 6.225 < 8.093] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I230.CB, (T0547)S287.CB) [> 3.040 = 5.067 < 6.588] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)S287.CB) [> 2.776 = 4.626 < 6.014] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)K286.CB) [> 2.610 = 4.351 < 5.656] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)E285.CB) [> 3.849 = 6.414 < 8.338] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)E285.CB) [> 4.094 = 6.824 < 8.871] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L211.CB, (T0547)A251.CB) [> 3.344 = 5.573 < 7.245] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S208.CB, (T0547)A247.CB) [> 4.192 = 6.986 < 9.082] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S188.CB, (T0547)T207.CB) [> 4.313 = 7.188 < 9.344] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)N289.CB) [> 4.712 = 7.854 < 10.210] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L186.CB, (T0547)K245.CB) [> 4.435 = 7.391 < 9.608] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R288.CB, (T0547)I319.CB) [> 3.072 = 5.120 < 6.655] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R288.CB, (T0547)I317.CB) [> 2.501 = 4.168 < 5.418] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R288.CB, (T0547)D316.CB) [> 4.153 = 6.922 < 8.998] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)I317.CB) [> 4.423 = 7.371 < 9.583] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)D316.CB) [> 3.656 = 6.093 < 7.920] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K286.CB, (T0547)I317.CB) [> 3.161 = 5.268 < 6.849] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E285.CB, (T0547)D316.CB) [> 4.097 = 6.829 < 8.878] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)T291.CB) [> 4.736 = 7.893 < 10.262] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L266.CB, (T0547)S287.CB) [> 3.557 = 5.929 < 7.708] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L266.CB, (T0547)K286.CB) [> 4.795 = 7.992 < 10.389] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L266.CB, (T0547)E285.CB) [> 3.792 = 6.320 < 8.217] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N265.CB, (T0547)E285.CB) [> 3.281 = 5.469 < 7.110] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)S287.CB) [> 4.503 = 7.505 < 9.757] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)L266.CB) [> 3.552 = 5.920 < 7.696] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)N289.CB) [> 3.719 = 6.198 < 8.058] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)N289.CB) [> 4.231 = 7.052 < 9.168] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)N289.CB) [> 4.573 = 7.621 < 9.907] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L234.CB, (T0547)N289.CB) [> 3.736 = 6.227 < 8.096] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)E546.CB) [> 4.374 = 7.289 < 9.476] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)Q554.CB) [> 3.337 = 5.561 < 7.229] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)A553.CB) [> 2.705 = 4.509 < 5.861] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)G549.CA) [> 4.323 = 7.205 < 9.367] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)V547.CB) [> 4.169 = 6.949 < 9.034] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)E546.CB) [> 4.781 = 7.968 < 10.358] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)Q554.CB) [> 3.739 = 6.232 < 8.101] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)D558.CB) [> 4.624 = 7.707 < 10.019] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L429.CB, (T0547)Q554.CB) [> 3.397 = 5.662 < 7.361] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)L560.CB) [> 3.455 = 5.758 < 7.486] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)D558.CB) [> 4.405 = 7.341 < 9.543] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D428.CB, (T0547)L557.CB) [> 3.326 = 5.543 < 7.205] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)D558.CB) [> 3.406 = 5.676 < 7.379] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)L557.CB) [> 2.840 = 4.734 < 6.154] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)D558.CB) [> 3.309 = 5.516 < 7.170] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)T559.CB) [> 3.469 = 5.781 < 7.515] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)D558.CB) [> 4.507 = 7.512 < 9.766] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V184.CB, (T0547)G252.CA) [> 4.711 = 7.851 < 10.207] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R173.CB, (T0547)L224.CB) [> 4.728 = 7.880 < 10.244] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A147.CB, (T0547)R173.CB) [> 4.240 = 7.067 < 9.187] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N141.CB, (T0547)R173.CB) [> 3.767 = 6.279 < 8.163] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D136.CB, (T0547)E164.CB) [> 4.572 = 7.620 < 9.906] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K102.CB, (T0547)G126.CA) [> 4.608 = 7.680 < 9.984] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)H568.CB) [> 4.384 = 7.307 < 9.499] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V82.CB, (T0547)R288.CB) [> 4.102 = 6.836 < 8.887] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)E552.CB) [> 4.632 = 7.720 < 10.036] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L49.CB, (T0547)E552.CB) [> 4.086 = 6.810 < 8.853] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)V397.CB) [> 3.856 = 6.427 < 8.355] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)R439.CB) [> 4.733 = 7.889 < 10.255] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L446.CB, (T0547)A536.CB) [> 4.446 = 7.411 < 9.634] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)E542.CB) [> 4.699 = 7.831 < 10.181] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)V522.CB) [> 2.824 = 4.706 < 6.118] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)D393.CB) [> 4.346 = 7.243 < 9.415] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)T390.CB) [> 4.231 = 7.051 < 9.167] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y363.CB, (T0547)Y377.CB) [> 4.771 = 7.951 < 10.337] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)V522.CB) [> 3.562 = 5.936 < 7.717] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)Y519.CB) [> 3.921 = 6.535 < 8.496] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)Y377.CB) [> 2.522 = 4.204 < 5.465] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)G524.CA) [> 4.756 = 7.927 < 10.305] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)L523.CB) [> 2.861 = 4.768 < 6.198] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)V522.CB) [> 4.581 = 7.634 < 9.925] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)L523.CB) [> 3.051 = 5.086 < 6.611] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)Y519.CB) [> 4.205 = 7.009 < 9.112] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I359.CB, (T0547)Y377.CB) [> 4.611 = 7.685 < 9.991] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)I478.CB) [> 3.088 = 5.146 < 6.690] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)D393.CB) [> 4.566 = 7.610 < 9.893] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y344.CB, (T0547)Y396.CB) [> 3.690 = 6.150 < 7.995] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)L497.CB) [> 4.256 = 7.094 < 9.222] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)L497.CB) [> 3.189 = 5.314 < 6.909] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D398.CB, (T0547)L446.CB) [> 4.480 = 7.467 < 9.707] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V397.CB, (T0547)L446.CB) [> 4.269 = 7.116 < 9.250] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)I478.CB) [> 3.933 = 6.555 < 8.521] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y396.CB, (T0547)S477.CB) [> 4.559 = 7.599 < 9.878] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S381.CB, (T0547)L419.CB) [> 4.685 = 7.808 < 10.151] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)I417.CB) [> 4.499 = 7.498 < 9.747] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)K423.CB) [> 4.749 = 7.916 < 10.291] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)L419.CB) [> 4.172 = 6.953 < 9.039] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)H410.CB) [> 4.164 = 6.940 < 9.022] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)V522.CB) [> 3.736 = 6.227 < 8.095] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)Y519.CB) [> 4.020 = 6.700 < 8.710] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)A518.CB) [> 4.787 = 7.979 < 10.372] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)E285.CB) [> 4.767 = 7.945 < 10.329] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E240.CB, (T0547)K310.CB) [> 4.490 = 7.483 < 9.727] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E240.CB, (T0547)Q309.CB) [> 4.501 = 7.502 < 9.752] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E240.CB, (T0547)F282.CB) [> 4.492 = 7.487 < 9.733] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E240.CB, (T0547)Y279.CB) [> 4.473 = 7.455 < 9.692] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N216.CB, (T0547)G262.CA) [> 4.415 = 7.358 < 9.565] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)E225.CB) [> 3.842 = 6.403 < 8.323] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V215.CB, (T0547)L224.CB) [> 3.916 = 6.527 < 8.486] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G159.CA, (T0547)V191.CB) [> 4.786 = 7.977 < 10.370] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)K177.CB) [> 4.667 = 7.778 < 10.112] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)H151.CB) [> 4.358 = 7.263 < 9.442] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)G150.CA) [> 3.856 = 6.427 < 8.355] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I140.CB, (T0547)M149.CB) [> 4.483 = 7.472 < 9.713] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L139.CB, (T0547)H151.CB) [> 2.376 = 3.960 < 5.148] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L139.CB, (T0547)G150.CA) [> 4.128 = 6.880 < 8.944] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L139.CB, (T0547)M149.CB) [> 3.590 = 5.983 < 7.777] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L139.CB, (T0547)E148.CB) [> 4.370 = 7.283 < 9.467] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E338.CB, (T0547)V504.CB) [> 3.731 = 6.218 < 8.083] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L337.CB, (T0547)V504.CB) [> 4.036 = 6.727 < 8.745] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V336.CB, (T0547)E535.CB) [> 4.486 = 7.477 < 9.720] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)I540.CB) [> 4.760 = 7.933 < 10.312] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H329.CB, (T0547)N541.CB) [> 4.550 = 7.584 < 9.859] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)E542.CB) [> 4.365 = 7.275 < 9.457] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)N541.CB) [> 2.452 = 4.087 < 5.313] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)I540.CB) [> 4.140 = 6.901 < 8.971] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A327.CB, (T0547)N541.CB) [> 4.028 = 6.713 < 8.727] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)S321.CB) [> 4.603 = 7.671 < 9.972] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E294.CB, (T0547)L303.CB) [> 4.584 = 7.640 < 9.932] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R293.CB, (T0547)L303.CB) [> 3.916 = 6.527 < 8.485] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L292.CB, (T0547)L303.CB) [> 3.732 = 6.219 < 8.085] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S287.CB, (T0547)R323.CB) [> 4.708 = 7.847 < 10.201] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V516.CB, (T0547)L560.CB) [> 3.371 = 5.618 < 7.303] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V502.CB, (T0547)T534.CB) [> 3.196 = 5.327 < 6.926] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T482.CB, (T0547)F498.CB) [> 2.710 = 4.517 < 5.873] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I481.CB, (T0547)F498.CB) [> 4.650 = 7.749 < 10.074] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D452.CB, (T0547)S477.CB) [> 3.326 = 5.544 < 7.207] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S449.CB, (T0547)S477.CB) [> 3.573 = 5.954 < 7.741] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q448.CB, (T0547)S477.CB) [> 2.759 = 4.598 < 5.978] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F447.CB, (T0547)S477.CB) [> 4.374 = 7.290 < 9.478] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L446.CB, (T0547)I478.CB) [> 4.045 = 6.742 < 8.765] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S445.CB, (T0547)D480.CB) [> 2.842 = 4.736 < 6.157] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N65.CB, (T0547)G322.CA) [> 4.442 = 7.404 < 9.625] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)A326.CB) [> 4.107 = 6.846 < 8.899] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)V325.CB) [> 3.690 = 6.150 < 7.995] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N61.CB, (T0547)G322.CA) [> 4.591 = 7.651 < 9.947] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E542.CB, (T0547)S555.CB) [> 2.976 = 4.961 < 6.449] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N541.CB, (T0547)S555.CB) [> 4.190 = 6.984 < 9.079] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I540.CB, (T0547)S555.CB) [> 3.918 = 6.530 < 8.489] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G524.CA, (T0547)Q554.CB) [> 2.788 = 4.646 < 6.040] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q520.CB, (T0547)T559.CB) [> 3.341 = 5.568 < 7.238] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q520.CB, (T0547)D558.CB) [> 4.228 = 7.047 < 9.161] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q520.CB, (T0547)I556.CB) [> 2.879 = 4.798 < 6.238] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q520.CB, (T0547)S555.CB) [> 3.105 = 5.174 < 6.727] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q520.CB, (T0547)Q554.CB) [> 2.650 = 4.416 < 5.741] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y519.CB, (T0547)Q554.CB) [> 4.478 = 7.464 < 9.703] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)S477.CB) [> 4.184 = 6.973 < 9.065] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L419.CB, (T0547)Y519.CB) [> 4.009 = 6.682 < 8.687] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)D452.CB) [> 3.203 = 5.338 < 6.940] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K414.CB, (T0547)D452.CB) [> 3.846 = 6.411 < 8.334] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)D452.CB) [> 2.872 = 4.787 < 6.223] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I412.CB, (T0547)D452.CB) [> 3.599 = 5.999 < 7.799] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)D452.CB) [> 3.550 = 5.916 < 7.691] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S445.CB, (T0547)W479.CB) [> 3.905 = 6.508 < 8.461] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S445.CB, (T0547)I478.CB) [> 3.083 = 5.138 < 6.680] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)T482.CB) [> 4.374 = 7.289 < 9.476] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)D501.CB) [> 4.361 = 7.268 < 9.448] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R439.CB, (T0547)G544.CA) [> 4.382 = 7.303 < 9.494] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)E535.CB) [> 4.776 = 7.960 < 10.349] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)T534.CB) [> 3.638 = 6.063 < 7.881] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)V502.CB) [> 3.684 = 6.140 < 7.982] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E438.CB, (T0547)D501.CB) [> 3.272 = 5.454 < 7.090] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)I556.CB) [> 4.507 = 7.512 < 9.765] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L420.CB, (T0547)G517.CA) [> 2.710 = 4.516 < 5.871] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A30.CB, (T0547)E542.CB) [> 4.433 = 7.389 < 9.606] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A30.CB, (T0547)N541.CB) [> 4.488 = 7.481 < 9.725] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A30.CB, (T0547)I540.CB) [> 2.309 = 3.849 < 5.004] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A30.CB, (T0547)R439.CB) [> 3.341 = 5.568 < 7.238] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A30.CB, (T0547)Q437.CB) [> 4.436 = 7.394 < 9.612] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A30.CB, (T0547)V436.CB) [> 2.319 = 3.864 < 5.024] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A30.CB, (T0547)L49.CB) [> 3.919 = 6.532 < 8.492] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)G549.CA) [> 4.000 = 6.667 < 8.667] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P29.CB, (T0547)I540.CB) [> 4.799 = 7.998 < 10.397] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K28.CB, (T0547)E552.CB) [> 3.579 = 5.965 < 7.755] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K28.CB, (T0547)I551.CB) [> 4.259 = 7.098 < 9.227] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K28.CB, (T0547)I550.CB) [> 3.023 = 5.039 < 6.551] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K28.CB, (T0547)G549.CA) [> 3.807 = 6.345 < 8.249] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K28.CB, (T0547)E435.CB) [> 4.777 = 7.961 < 10.350] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K28.CB, (T0547)H410.CB) [> 4.073 = 6.788 < 8.825] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K28.CB, (T0547)I407.CB) [> 4.709 = 7.849 < 10.204] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K27.CB, (T0547)Y440.CB) [> 4.780 = 7.967 < 10.357] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)V547.CB) [> 4.275 = 7.125 < 9.263] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)P371.CB) [> 4.025 = 6.709 < 8.721] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D33.CB, (T0547)I407.CB) [> 4.702 = 7.837 < 10.188] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D33.CB, (T0547)P371.CB) [> 4.247 = 7.078 < 9.201] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)G549.CA) [> 3.672 = 6.119 < 7.955] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)E548.CB) [> 2.907 = 4.845 < 6.298] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)V547.CB) [> 4.211 = 7.019 < 9.124] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)E546.CB) [> 4.514 = 7.523 < 9.780] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)K370.CB) [> 4.320 = 7.201 < 9.361] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)I550.CB) [> 2.753 = 4.588 < 5.965] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)G549.CA) [> 2.149 = 3.582 < 4.657] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)E548.CB) [> 3.961 = 6.601 < 8.582] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)V547.CB) [> 3.358 = 5.596 < 7.275] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)K370.CB) [> 4.067 = 6.778 < 8.811] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A30.CB, (T0547)Y545.CB) [> 4.629 = 7.714 < 10.029] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A30.CB, (T0547)G544.CA) [> 4.102 = 6.836 < 8.887] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A30.CB, (T0547)K543.CB) [> 3.111 = 5.184 < 6.740] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N18.CB, (T0547)K27.CB) [> 3.389 = 5.648 < 7.342] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K17.CB, (T0547)G92.CA) [> 3.536 = 5.893 < 7.661] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K17.CB, (T0547)P91.CB) [> 3.737 = 6.228 < 8.096] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I16.CB, (T0547)A30.CB) [> 4.372 = 7.286 < 9.472] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I16.CB, (T0547)K28.CB) [> 4.127 = 6.878 < 8.942] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I15.CB, (T0547)P29.CB) [> 4.627 = 7.711 < 10.025] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F14.CB, (T0547)I32.CB) [> 4.604 = 7.673 < 9.974] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F14.CB, (T0547)I31.CB) [> 3.250 = 5.417 < 7.042] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F14.CB, (T0547)A30.CB) [> 3.911 = 6.518 < 8.474] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F14.CB, (T0547)P29.CB) [> 4.233 = 7.055 < 9.171] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N13.CB, (T0547)E435.CB) [> 4.738 = 7.896 < 10.265] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y25.CB, (T0547)L557.CB) [> 4.063 = 6.772 < 8.803] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y25.CB, (T0547)I481.CB) [> 2.986 = 4.976 < 6.469] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y25.CB, (T0547)L375.CB) [> 3.555 = 5.925 < 7.703] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)L560.CB) [> 3.144 = 5.240 < 6.812] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)L557.CB) [> 3.361 = 5.601 < 7.282] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)R39.CB) [> 4.333 = 7.221 < 9.387] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)K36.CB) [> 4.453 = 7.422 < 9.649] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)V35.CB) [> 4.004 = 6.673 < 8.675] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)L560.CB) [> 4.678 = 7.796 < 10.135] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)R39.CB) [> 4.193 = 6.988 < 9.085] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V21.CB, (T0547)P371.CB) [> 4.512 = 7.520 < 9.776] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K20.CB, (T0547)H329.CB) [> 4.764 = 7.940 < 10.322] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N18.CB, (T0547)K28.CB) [> 3.395 = 5.658 < 7.355] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)S475.CB) [> 3.772 = 6.287 < 8.173] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)Q433.CB) [> 3.913 = 6.522 < 8.479] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)E406.CB) [> 3.866 = 6.443 < 8.376] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)F513.CB) [> 4.150 = 6.917 < 8.992] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)S475.CB) [> 3.337 = 5.562 < 7.230] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)Q448.CB) [> 4.662 = 7.770 < 10.101] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)F444.CB) [> 3.816 = 6.360 < 8.268] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)V442.CB) [> 4.731 = 7.886 < 10.251] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)E435.CB) [> 3.637 = 6.061 < 7.879] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)L430.CB) [> 3.262 = 5.436 < 7.067] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)L429.CB) [> 3.823 = 6.372 < 8.283] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D41.CB, (T0547)K352.CB) [> 3.911 = 6.518 < 8.473] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D40.CB, (T0547)T409.CB) [> 4.189 = 6.982 < 9.077] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D40.CB, (T0547)V331.CB) [> 3.757 = 6.261 < 8.139] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)S539.CB) [> 4.228 = 7.047 < 9.162] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)E438.CB) [> 3.786 = 6.310 < 8.203] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)E435.CB) [> 4.144 = 6.906 < 8.978] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)I550.CB) [> 4.338 = 7.230 < 9.399] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)Q448.CB) [> 4.563 = 7.604 < 9.886] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)E435.CB) [> 3.631 = 6.051 < 7.867] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)E535.CB) [> 4.397 = 7.329 < 9.527] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)T534.CB) [> 2.441 = 4.069 < 5.290] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)R474.CB) [> 2.464 = 4.107 < 5.339] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)L583.CB) [> 4.773 = 7.954 < 10.340] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)S475.CB) [> 4.438 = 7.396 < 9.615] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)R474.CB) [> 4.229 = 7.049 < 9.163] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)Q448.CB) [> 4.667 = 7.779 < 10.112] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)F447.CB) [> 4.696 = 7.827 < 10.175] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)Q433.CB) [> 4.177 = 6.962 < 9.051] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)L408.CB) [> 4.714 = 7.857 < 10.214] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E37.CB, (T0547)L49.CB) [> 4.730 = 7.883 < 10.248] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)V547.CB) [> 2.591 = 4.319 < 5.615] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)E546.CB) [> 4.272 = 7.120 < 9.256] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)L54.CB) [> 4.354 = 7.257 < 9.434] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)H53.CB) [> 4.565 = 7.609 < 9.892] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)F51.CB) [> 2.283 = 3.805 < 4.947] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K36.CB, (T0547)R50.CB) [> 4.768 = 7.947 < 10.331] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)E546.CB) [> 4.413 = 7.356 < 9.562] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)Y545.CB) [> 4.541 = 7.568 < 9.839] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)K543.CB) [> 4.253 = 7.089 < 9.216] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)I540.CB) [> 4.439 = 7.399 < 9.618] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)S539.CB) [> 3.869 = 6.449 < 8.384] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)L441.CB) [> 4.503 = 7.505 < 9.757] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)R439.CB) [> 4.576 = 7.627 < 9.915] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)V436.CB) [> 4.471 = 7.451 < 9.686] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)F51.CB) [> 4.785 = 7.975 < 10.367] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)P46.CB) [> 4.549 = 7.582 < 9.857] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)A431.CB) [> 4.664 = 7.774 < 10.106] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)P371.CB) [> 4.374 = 7.290 < 9.477] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)K370.CB) [> 4.625 = 7.708 < 10.021] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)Q354.CB) [> 4.509 = 7.514 < 9.769] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)I350.CB) [> 3.656 = 6.094 < 7.922] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L38.CB, (T0547)V547.CB) [> 4.164 = 6.941 < 9.023] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L38.CB, (T0547)E546.CB) [> 4.578 = 7.630 < 9.920] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L38.CB, (T0547)N541.CB) [> 3.713 = 6.188 < 8.044] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L38.CB, (T0547)S539.CB) [> 4.452 = 7.419 < 9.645] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L38.CB, (T0547)V442.CB) [> 4.064 = 6.773 < 8.805] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L38.CB, (T0547)E438.CB) [> 4.764 = 7.940 < 10.322] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E37.CB, (T0547)V547.CB) [> 4.330 = 7.217 < 9.382] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E37.CB, (T0547)E546.CB) [> 2.933 = 4.888 < 6.355] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E37.CB, (T0547)Y545.CB) [> 3.519 = 5.865 < 7.624] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E37.CB, (T0547)G544.CA) [> 4.533 = 7.556 < 9.822] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E37.CB, (T0547)A374.CB) [> 4.165 = 6.942 < 9.025] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E37.CB, (T0547)P371.CB) [> 2.877 = 4.795 < 6.233] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E37.CB, (T0547)V331.CB) [> 4.389 = 7.316 < 9.510] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L399.CB, (T0547)A536.CB) [> 3.693 = 6.154 < 8.001] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L399.CB, (T0547)Q448.CB) [> 3.510 = 5.851 < 7.606] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V397.CB, (T0547)P451.CB) [> 4.431 = 7.384 < 9.600] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I388.CB, (T0547)R439.CB) [> 4.781 = 7.968 < 10.358] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)A416.CB) [> 4.766 = 7.943 < 10.326] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A374.CB, (T0547)P426.CB) [> 3.807 = 6.345 < 8.248] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)T390.CB) [> 4.651 = 7.752 < 10.078] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)L385.CB) [> 2.940 = 4.900 < 6.370] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S372.CB, (T0547)D383.CB) [> 4.030 = 6.716 < 8.731] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)A416.CB) [> 4.782 = 7.970 < 10.360] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)I382.CB) [> 3.317 = 5.528 < 7.186] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K370.CB, (T0547)S381.CB) [> 2.475 = 4.125 < 5.363] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)N425.CB) [> 3.796 = 6.327 < 8.225] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)Q424.CB) [> 2.820 = 4.700 < 6.109] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)G421.CA) [> 3.937 = 6.562 < 8.531] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I369.CB, (T0547)D383.CB) [> 4.683 = 7.805 < 10.146] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)P426.CB) [> 3.873 = 6.456 < 8.392] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E406.CB, (T0547)D562.CB) [> 3.155 = 5.258 < 6.835] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E406.CB, (T0547)F444.CB) [> 4.494 = 7.489 < 9.736] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A405.CB, (T0547)S445.CB) [> 4.469 = 7.448 < 9.683] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N404.CB, (T0547)A536.CB) [> 4.738 = 7.896 < 10.265] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N404.CB, (T0547)Q448.CB) [> 3.131 = 5.219 < 6.785] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N404.CB, (T0547)F447.CB) [> 3.694 = 6.156 < 8.003] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N404.CB, (T0547)L446.CB) [> 4.131 = 6.885 < 8.950] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N404.CB, (T0547)F444.CB) [> 4.015 = 6.691 < 8.698] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S403.CB, (T0547)L563.CB) [> 3.038 = 5.064 < 6.583] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S403.CB, (T0547)D562.CB) [> 4.746 = 7.910 < 10.283] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S403.CB, (T0547)Q448.CB) [> 3.699 = 6.165 < 8.014] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R402.CB, (T0547)D564.CB) [> 4.761 = 7.936 < 10.316] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R402.CB, (T0547)L563.CB) [> 4.497 = 7.495 < 9.744] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D401.CB, (T0547)Q448.CB) [> 2.809 = 4.681 < 6.085] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D401.CB, (T0547)F447.CB) [> 4.080 = 6.801 < 8.841] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q400.CB, (T0547)L563.CB) [> 4.027 = 6.711 < 8.724] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q400.CB, (T0547)Q448.CB) [> 4.343 = 7.239 < 9.410] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P356.CB, (T0547)E438.CB) [> 2.813 = 4.688 < 6.095] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N355.CB, (T0547)E438.CB) [> 2.821 = 4.702 < 6.112] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)R439.CB) [> 4.490 = 7.483 < 9.728] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)R439.CB) [> 4.658 = 7.764 < 10.093] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I333.CB, (T0547)Q554.CB) [> 4.584 = 7.640 < 9.932] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)Q554.CB) [> 4.793 = 7.989 < 10.386] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)E435.CB) [> 4.767 = 7.945 < 10.328] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)D398.CB) [> 4.766 = 7.943 < 10.326] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)Q554.CB) [> 4.049 = 6.748 < 8.772] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V331.CB, (T0547)A553.CB) [> 4.554 = 7.591 < 9.868] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R323.CB, (T0547)H568.CB) [> 3.752 = 6.254 < 8.130] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y295.CB, (T0547)E320.CB) [> 4.794 = 7.989 < 10.386] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y290.CB, (T0547)L313.CB) [> 3.161 = 5.268 < 6.848] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y290.CB, (T0547)K310.CB) [> 4.315 = 7.192 < 9.349] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N289.CB, (T0547)I319.CB) [> 4.598 = 7.663 < 9.962] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N289.CB, (T0547)P315.CB) [> 4.673 = 7.789 < 10.125] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N289.CB, (T0547)L313.CB) [> 3.579 = 5.965 < 7.754] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)N425.CB) [> 3.220 = 5.367 < 6.978] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)Q424.CB) [> 3.230 = 5.384 < 6.999] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)L385.CB) [> 4.268 = 7.114 < 9.248] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)I388.CB) [> 3.315 = 5.524 < 7.182] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)S387.CB) [> 3.748 = 6.247 < 8.121] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y366.CB, (T0547)E386.CB) [> 4.270 = 7.116 < 9.251] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)N425.CB) [> 3.190 = 5.317 < 6.912] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)D393.CB) [> 4.781 = 7.969 < 10.360] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L365.CB, (T0547)I388.CB) [> 3.661 = 6.102 < 7.932] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)P426.CB) [> 4.503 = 7.506 < 9.757] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)N425.CB) [> 4.467 = 7.445 < 9.678] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)T390.CB) [> 4.765 = 7.942 < 10.325] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)S372.CB) [> 3.381 = 5.635 < 7.326] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)N425.CB) [> 4.124 = 6.874 < 8.936] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D360.CB, (T0547)S372.CB) [> 3.607 = 6.012 < 7.815] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)E435.CB) [> 4.466 = 7.444 < 9.677] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)E438.CB) [> 4.415 = 7.359 < 9.566] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)D434.CB) [> 4.782 = 7.969 < 10.360] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D7.CB, (T0547)V547.CB) [> 4.281 = 7.136 < 9.276] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D7.CB, (T0547)Y545.CB) [> 3.515 = 5.858 < 7.616] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D7.CB, (T0547)G544.CA) [> 4.518 = 7.531 < 9.790] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D7.CB, (T0547)G42.CA) [> 3.889 = 6.482 < 8.426] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D7.CB, (T0547)D40.CB) [> 2.440 = 4.066 < 5.286] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D7.CB, (T0547)R39.CB) [> 3.413 = 5.689 < 7.396] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I6.CB, (T0547)Y43.CB) [> 3.210 = 5.350 < 6.954] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I6.CB, (T0547)D40.CB) [> 4.729 = 7.882 < 10.247] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G5.CA, (T0547)V547.CB) [> 4.085 = 6.809 < 8.852] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L560.CB, (T0547)A569.CB) [> 4.016 = 6.693 < 8.701] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N13.CB, (T0547)I32.CB) [> 3.028 = 5.046 < 6.560] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N13.CB, (T0547)I31.CB) [> 4.015 = 6.692 < 8.700] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G10.CA, (T0547)A330.CB) [> 4.787 = 7.978 < 10.371] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G10.CA, (T0547)Q281.CB) [> 4.766 = 7.943 < 10.326] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)W9.CB, (T0547)S280.CB) [> 4.788 = 7.979 < 10.373] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)V547.CB) [> 4.177 = 6.961 < 9.050] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)E546.CB) [> 4.656 = 7.759 < 10.087] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)I333.CB) [> 3.916 = 6.526 < 8.484] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)L49.CB) [> 3.986 = 6.643 < 8.636] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)L47.CB) [> 4.202 = 7.003 < 9.104] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)Y43.CB) [> 3.279 = 5.464 < 7.104] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)G42.CA) [> 4.358 = 7.263 < 9.442] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)D40.CB) [> 4.386 = 7.311 < 9.504] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I8.CB, (T0547)R39.CB) [> 3.194 = 5.323 < 6.919] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)E548.CB) [> 3.790 = 6.316 < 8.211] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)V547.CB) [> 2.480 = 4.134 < 5.374] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L408.CB, (T0547)D562.CB) [> 4.776 = 7.960 < 10.348] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)L563.CB) [> 3.779 = 6.298 < 8.187] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)D562.CB) [> 2.803 = 4.671 < 6.072] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)T559.CB) [> 4.067 = 6.778 < 8.811] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I407.CB, (T0547)G549.CA) [> 4.609 = 7.682 < 9.987] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E406.CB, (T0547)D564.CB) [> 4.244 = 7.074 < 9.196] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E406.CB, (T0547)L563.CB) [> 3.271 = 5.452 < 7.088] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I556.CB, (T0547)I570.CB) [> 2.967 = 4.944 < 6.427] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D452.CB, (T0547)I537.CB) [> 4.497 = 7.494 < 9.743] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D452.CB, (T0547)A536.CB) [> 3.324 = 5.540 < 7.202] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)E548.CB) [> 4.421 = 7.369 < 9.579] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)V547.CB) [> 3.035 = 5.059 < 6.576] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)E546.CB) [> 4.054 = 6.756 < 8.783] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)Y545.CB) [> 3.098 = 5.163 < 6.712] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)R439.CB) [> 4.755 = 7.924 < 10.302] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L411.CB, (T0547)E438.CB) [> 3.007 = 5.012 < 6.516] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)Q554.CB) [> 2.663 = 4.439 < 5.770] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)A553.CB) [> 3.733 = 6.222 < 8.089] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)G549.CA) [> 4.040 = 6.734 < 8.754] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)E548.CB) [> 2.641 = 4.402 < 5.722] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)Y440.CB) [> 4.021 = 6.702 < 8.712] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)R439.CB) [> 3.817 = 6.362 < 8.271] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)E438.CB) [> 4.717 = 7.862 < 10.221] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)L385.CB) [> 4.755 = 7.924 < 10.302] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)E535.CB) [> 3.331 = 5.551 < 7.216] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K352.CB, (T0547)T534.CB) [> 4.513 = 7.522 < 9.778] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)V547.CB) [> 3.165 = 5.275 < 6.857] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L351.CB, (T0547)Q448.CB) [> 4.688 = 7.813 < 10.157] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)I538.CB) [> 4.746 = 7.910 < 10.282] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)A536.CB) [> 4.472 = 7.454 < 9.690] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I350.CB, (T0547)E535.CB) [> 3.354 = 5.590 < 7.266] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)V547.CB) [> 4.590 = 7.650 < 9.945] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L349.CB, (T0547)I540.CB) [> 2.907 = 4.844 < 6.298] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E361.CB, (T0547)Q437.CB) [> 4.445 = 7.409 < 9.632] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L362.CB, (T0547)V397.CB) [> 4.646 = 7.744 < 10.067] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)A431.CB) [> 4.799 = 7.998 < 10.398] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)I432.CB) [> 4.455 = 7.425 < 9.652] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L375.CB, (T0547)E435.CB) [> 2.987 = 4.979 < 6.472] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E376.CB, (T0547)A427.CB) [> 4.793 = 7.989 < 10.385] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)K415.CB) [> 4.463 = 7.439 < 9.671] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y377.CB, (T0547)N425.CB) [> 4.467 = 7.445 < 9.679] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L378.CB, (T0547)N425.CB) [> 3.780 = 6.300 < 8.191] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R402.CB, (T0547)L430.CB) [> 4.700 = 7.834 < 10.184] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T409.CB, (T0547)N425.CB) [> 4.695 = 7.826 < 10.174] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H410.CB, (T0547)A427.CB) [> 3.635 = 6.058 < 7.875] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)I333.CB) [> 4.770 = 7.950 < 10.335] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)L337.CB) [> 4.265 = 7.109 < 9.241] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T154.CB, (T0547)Q226.CB) [> 4.498 = 7.497 < 9.746] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E158.CB, (T0547)G190.CA) [> 2.785 = 4.641 < 6.034] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V191.CB, (T0547)L206.CB) [> 4.330 = 7.216 < 9.381] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)E210.CB) [> 3.042 = 5.070 < 6.591] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G192.CA, (T0547)L211.CB) [> 3.658 = 6.096 < 7.925] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T207.CB, (T0547)I254.CB) [> 4.698 = 7.831 < 10.180] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S208.CB, (T0547)T256.CB) [> 3.916 = 6.526 < 8.484] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)E294.CB) [> 2.371 = 3.952 < 5.138] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)K310.CB) [> 3.528 = 5.880 < 7.644] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)L292.CB) [> 4.684 = 7.806 < 10.148] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)R293.CB) [> 2.177 = 3.628 < 4.717] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)Q309.CB) [> 4.381 = 7.302 < 9.492] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E294.CB, (T0547)I319.CB) [> 4.428 = 7.379 < 9.593] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N328.CB, (T0547)L560.CB) [> 4.588 = 7.646 < 9.940] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)S539.CB) [> 3.602 = 6.004 < 7.805] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E346.CB, (T0547)I540.CB) [> 4.641 = 7.735 < 10.055] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)S539.CB) [> 4.332 = 7.219 < 9.385] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)I540.CB) [> 2.411 = 4.018 < 5.224] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N347.CB, (T0547)N541.CB) [> 4.422 = 7.369 < 9.580] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)I538.CB) [> 4.297 = 7.161 < 9.310] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K348.CB, (T0547)I540.CB) [> 4.046 = 6.744 < 8.767] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L441.CB, (T0547)N541.CB) [> 4.772 = 7.953 < 10.339] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V442.CB, (T0547)N541.CB) [> 4.001 = 6.669 < 8.669] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E488.CB, (T0547)A536.CB) [> 4.259 = 7.098 < 9.228] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I489.CB, (T0547)T531.CB) [> 4.263 = 7.105 < 9.236] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I489.CB, (T0547)L563.CB) [> 3.610 = 6.017 < 7.823] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S490.CB, (T0547)D501.CB) [> 3.819 = 6.365 < 8.274] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S490.CB, (T0547)T531.CB) [> 2.666 = 4.443 < 5.776] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y491.CB, (T0547)T531.CB) [> 4.749 = 7.915 < 10.289] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y491.CB, (T0547)D562.CB) [> 4.444 = 7.406 < 9.628] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y491.CB, (T0547)L563.CB) [> 3.332 = 5.553 < 7.218] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y491.CB, (T0547)D564.CB) [> 4.311 = 7.185 < 9.340] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S492.CB, (T0547)T531.CB) [> 3.437 = 5.728 < 7.446] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S492.CB, (T0547)A536.CB) [> 4.561 = 7.601 < 9.882] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S492.CB, (T0547)T559.CB) [> 4.329 = 7.215 < 9.379] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S492.CB, (T0547)D562.CB) [> 3.851 = 6.418 < 8.343] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S492.CB, (T0547)L563.CB) [> 4.155 = 6.925 < 9.002] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K493.CB, (T0547)T531.CB) [> 3.672 = 6.121 < 7.957] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D494.CB, (T0547)D562.CB) [> 4.785 = 7.975 < 10.367] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K495.CB, (T0547)T559.CB) [> 4.409 = 7.349 < 9.554] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D501.CB, (T0547)T531.CB) [> 3.250 = 5.416 < 7.041] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D501.CB, (T0547)H532.CB) [> 3.996 = 6.660 < 8.659] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D501.CB, (T0547)A536.CB) [> 4.723 = 7.872 < 10.233] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)Q424.CB) [> 4.794 = 7.990 < 10.386] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)N425.CB) [> 4.024 = 6.707 < 8.719] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T413.CB, (T0547)P426.CB) [> 3.009 = 5.015 < 6.520] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K415.CB, (T0547)Q424.CB) [> 2.937 = 4.895 < 6.363] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)S449.CB) [> 4.585 = 7.642 < 9.935] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G421.CA, (T0547)M450.CB) [> 3.651 = 6.085 < 7.911] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)M450.CB) [> 2.901 = 4.835 < 6.285] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D422.CB, (T0547)P451.CB) [> 3.743 = 6.238 < 8.110] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N425.CB, (T0547)V547.CB) [> 4.264 = 7.106 < 9.238] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)F447.CB) [> 3.829 = 6.382 < 8.297] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)L446.CB) [> 4.111 = 6.852 < 8.908] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)F444.CB) [> 3.937 = 6.561 < 8.529] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I432.CB, (T0547)D558.CB) [> 4.793 = 7.988 < 10.384] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y440.CB, (T0547)N541.CB) [> 3.710 = 6.184 < 8.039] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q437.CB, (T0547)Q554.CB) [> 3.449 = 5.748 < 7.472] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)D558.CB) [> 4.466 = 7.443 < 9.675] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)I551.CB) [> 4.573 = 7.621 < 9.908] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)E546.CB) [> 4.668 = 7.779 < 10.113] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)Y545.CB) [> 3.593 = 5.989 < 7.785] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)I540.CB) [> 3.855 = 6.425 < 8.352] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V436.CB, (T0547)I538.CB) [> 4.547 = 7.579 < 9.852] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E435.CB, (T0547)Q554.CB) [> 3.224 = 5.373 < 6.985] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E435.CB, (T0547)I551.CB) [> 2.277 = 3.795 < 4.933] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E435.CB, (T0547)G549.CA) [> 4.666 = 7.777 < 10.110] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D434.CB, (T0547)E546.CB) [> 4.130 = 6.883 < 8.948] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D434.CB, (T0547)Y545.CB) [> 3.401 = 5.668 < 7.369] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q433.CB, (T0547)L557.CB) [> 4.798 = 7.996 < 10.395] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)V331.CB) [> 4.288 = 7.147 < 9.291] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)V436.CB) [> 3.173 = 5.289 < 6.876] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E26.CB, (T0547)A374.CB) [> 4.586 = 7.644 < 9.937] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)L408.CB) [> 3.643 = 6.072 < 7.894] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)H410.CB) [> 3.825 = 6.376 < 8.288] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)D41.CB) [> 3.970 = 6.616 < 8.601] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I32.CB, (T0547)L408.CB) [> 3.810 = 6.350 < 8.255] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D33.CB, (T0547)G42.CA) [> 4.134 = 6.891 < 8.958] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)D434.CB) [> 4.062 = 6.771 < 8.802] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V35.CB, (T0547)L408.CB) [> 3.369 = 5.615 < 7.300] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D40.CB, (T0547)N373.CB) [> 4.708 = 7.846 < 10.200] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y43.CB, (T0547)T534.CB) [> 3.108 = 5.180 < 6.734] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)F51.CB) [> 2.986 = 4.977 < 6.470] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)S372.CB) [> 2.586 = 4.310 < 5.602] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)K370.CB) [> 4.400 = 7.333 < 9.533] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)W9.CB, (T0547)N328.CB) [> 4.565 = 7.609 < 9.891] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D7.CB, (T0547)N284.CB) [> 4.276 = 7.127 < 9.265] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D7.CB, (T0547)K283.CB) [> 4.509 = 7.516 < 9.770] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D7.CB, (T0547)Q281.CB) [> 4.208 = 7.013 < 9.118] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D7.CB, (T0547)E278.CB) [> 2.781 = 4.635 < 6.025] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T534.CB, (T0547)K582.CB) [> 3.550 = 5.917 < 7.693] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)T534.CB, (T0547)V547.CB) [> 3.849 = 6.415 < 8.340] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P533.CB, (T0547)V584.CB) [> 4.753 = 7.922 < 10.299] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P533.CB, (T0547)L583.CB) [> 3.833 = 6.388 < 8.304] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)L583.CB) [> 4.198 = 6.997 < 9.096] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)T534.CB) [> 4.718 = 7.864 < 10.223] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A427.CB, (T0547)P533.CB) [> 3.240 = 5.400 < 7.020] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)Q588.CB) [> 3.803 = 6.339 < 8.240] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)N585.CB) [> 3.764 = 6.273 < 8.155] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)L583.CB) [> 3.842 = 6.404 < 8.325] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P426.CB, (T0547)P533.CB) [> 4.571 = 7.619 < 9.904] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)P533.CB) [> 4.698 = 7.830 < 10.179] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K44.CB, (T0547)T534.CB) [> 3.450 = 5.750 < 7.475] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)P533.CB) [> 4.010 = 6.683 < 8.688] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)P533.CB) [> 2.499 = 4.166 < 5.415] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A195.CB, (T0547)E240.CB) [> 4.723 = 7.872 < 10.233] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K286.CB, (T0547)D298.CB) [> 4.787 = 7.979 < 10.373] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)P533.CB) [> 4.413 = 7.355 < 9.561] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K353.CB, (T0547)P533.CB) [> 4.255 = 7.092 < 9.220] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)P533.CB) [> 3.123 = 5.206 < 6.767] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D364.CB, (T0547)L394.CB) [> 4.758 = 7.931 < 10.310] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K367.CB, (T0547)L399.CB) [> 4.602 = 7.670 < 9.971] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S368.CB, (T0547)L399.CB) [> 4.776 = 7.960 < 10.349] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)P533.CB) [> 4.553 = 7.589 < 9.866] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)N585.CB) [> 2.796 = 4.660 < 6.058] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)I478.CB) [> 2.875 = 4.791 < 6.229] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)S477.CB) [> 4.488 = 7.480 < 9.724] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)Q588.CB) [> 4.146 = 6.911 < 8.984] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)K587.CB) [> 4.649 = 7.749 < 10.074] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)Q588.CB) [> 1.921 = 3.201 < 4.162] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)H53.CB, (T0547)K589.CB) [> 4.754 = 7.924 < 10.301] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)I570.CB) [> 2.918 = 4.864 < 6.323] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)Q588.CB) [> 2.899 = 4.831 < 6.281] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q56.CB, (T0547)H591.CB) [> 3.162 = 5.269 < 6.850] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K57.CB, (T0547)I570.CB) [> 4.655 = 7.758 < 10.085] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K57.CB, (T0547)L574.CB) [> 4.655 = 7.759 < 10.087] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K57.CB, (T0547)Q588.CB) [> 4.664 = 7.773 < 10.105] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q58.CB, (T0547)F282.CB) [> 4.732 = 7.886 < 10.252] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V21.CB, (T0547)G92.CA) [> 4.411 = 7.352 < 9.558] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)S475.CB) [> 4.367 = 7.279 < 9.463] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)A476.CB) [> 4.220 = 7.033 < 9.143] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)C22.CB, (T0547)S477.CB) [> 3.253 = 5.422 < 7.049] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I23.CB, (T0547)H568.CB) [> 3.611 = 6.018 < 7.824] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)F514.CB) [> 4.564 = 7.607 < 9.890] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)L515.CB) [> 3.612 = 6.020 < 7.826] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)N585.CB) [> 4.365 = 7.276 < 9.458] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)D586.CB) [> 3.537 = 5.895 < 7.664] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N24.CB, (T0547)K589.CB) [> 4.039 = 6.731 < 8.750] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)S477.CB) [> 3.309 = 5.515 < 7.169] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I31.CB, (T0547)F514.CB) [> 3.168 = 5.280 < 6.864] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I34.CB, (T0547)S475.CB) [> 4.560 = 7.600 < 9.880] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R39.CB, (T0547)S372.CB) [> 4.033 = 6.722 < 8.739] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G45.CA, (T0547)P472.CB) [> 4.365 = 7.276 < 9.458] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P46.CB, (T0547)P472.CB) [> 2.391 = 3.984 < 5.180] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)P472.CB) [> 3.193 = 5.321 < 6.917] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L47.CB, (T0547)T473.CB) [> 3.234 = 5.389 < 7.006] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)R474.CB) [> 3.216 = 5.360 < 6.968] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)R50.CB, (T0547)S475.CB) [> 4.135 = 6.892 < 8.960] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)S477.CB) [> 3.107 = 5.179 < 6.732] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F51.CB, (T0547)F513.CB) [> 4.767 = 7.945 < 10.328] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)P52.CB, (T0547)S477.CB) [> 4.117 = 6.861 < 8.920] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F282.CB, (T0547)K415.CB) [> 3.211 = 5.351 < 6.956] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K283.CB, (T0547)A327.CB) [> 3.097 = 5.162 < 6.710] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K283.CB, (T0547)N328.CB) [> 2.830 = 4.716 < 6.131] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K283.CB, (T0547)L411.CB) [> 4.701 = 7.836 < 10.186] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N284.CB, (T0547)N328.CB) [> 4.713 = 7.856 < 10.212] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A330.CB, (T0547)R474.CB) [> 4.586 = 7.643 < 9.936] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L332.CB, (T0547)P472.CB) [> 3.946 = 6.576 < 8.549] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A334.CB, (T0547)P472.CB) [> 4.752 = 7.920 < 10.296] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K357.CB, (T0547)P472.CB) [> 4.313 = 7.189 < 9.345] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L358.CB, (T0547)P472.CB) [> 3.801 = 6.334 < 8.235] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)P472.CB) [> 4.742 = 7.903 < 10.273] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)R474.CB) [> 4.407 = 7.345 < 9.549] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L418.CB, (T0547)L511.CB) [> 4.436 = 7.393 < 9.611] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L430.CB, (T0547)L511.CB) [> 4.233 = 7.054 < 9.170] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)L511.CB) [> 3.529 = 5.882 < 7.646] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)A431.CB, (T0547)G512.CA) [> 4.133 = 6.888 < 8.955] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)I478.CB, (T0547)I570.CB) [> 3.049 = 5.081 < 6.606] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)W479.CB, (T0547)H568.CB) [> 3.218 = 5.363 < 6.972] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)W479.CB, (T0547)A569.CB) [> 2.838 = 4.729 < 6.148] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)W479.CB, (T0547)I570.CB) [> 2.450 = 4.084 < 5.309] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)W479.CB, (T0547)M571.CB) [> 4.065 = 6.774 < 8.807] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)D480.CB, (T0547)N575.CB) [> 3.290 = 5.483 < 7.128] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F514.CB, (T0547)N585.CB) [> 4.654 = 7.756 < 10.083] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L515.CB, (T0547)N585.CB) [> 3.428 = 5.713 < 7.427] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L515.CB, (T0547)D586.CB) [> 4.788 = 7.980 < 10.374] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L515.CB, (T0547)Q588.CB) [> 3.130 = 5.217 < 6.783] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L515.CB, (T0547)K589.CB) [> 3.320 = 5.534 < 7.194] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E60.CB, (T0547)I573.CB) [> 4.488 = 7.480 < 9.724] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)E60.CB, (T0547)H591.CB) [> 4.533 = 7.555 < 9.822] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)R474.CB) [> 4.179 = 6.965 < 9.054] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)L511.CB) [> 4.161 = 6.935 < 9.015] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)A476.CB) [> 4.003 = 6.671 < 8.673] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G92.CA, (T0547)F513.CB) [> 4.003 = 6.671 < 8.673] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K99.CB, (T0547)L574.CB) [> 3.501 = 5.835 < 7.585] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K99.CB, (T0547)S581.CB) [> 4.090 = 6.816 < 8.861] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)K99.CB, (T0547)I592.CB) [> 3.488 = 5.814 < 7.558] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)L100.CB, (T0547)L574.CB) [> 3.466 = 5.777 < 7.510] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F282.CB, (T0547)K414.CB) [> 4.063 = 6.772 < 8.804] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F282.CB, (T0547)I412.CB) [> 4.222 = 7.036 < 9.147] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F282.CB, (T0547)A327.CB) [> 1.602 = 2.670 < 3.472] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F282.CB, (T0547)A326.CB) [> 3.932 = 6.553 < 8.519] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F282.CB, (T0547)V325.CB) [> 4.226 = 7.043 < 9.156] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F282.CB, (T0547)F324.CB) [> 3.078 = 5.131 < 6.670] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F282.CB, (T0547)R323.CB) [> 2.434 = 4.056 < 5.273] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F282.CB, (T0547)G322.CA) [> 4.561 = 7.602 < 9.883] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)F282.CB, (T0547)T291.CB) [> 4.230 = 7.050 < 9.165] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q281.CB, (T0547)N328.CB) [> 2.666 = 4.443 < 5.776] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q281.CB, (T0547)A327.CB) [> 3.071 = 5.118 < 6.654] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)S280.CB, (T0547)I412.CB) [> 4.701 = 7.834 < 10.185] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)V277.CB, (T0547)H329.CB) [> 4.794 = 7.990 < 10.386] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)G101.CA, (T0547)S581.CB) [> 3.599 = 5.999 < 7.798] w=0.013 to rejected_constraints # Constraint # added constraint: constraint((T0547)N132.CB, (T0547)I153.CB) [> 4.794 = 7.990 < 10.387] w=0.004 to rejected_constraints # Constraint # added constraint: constraint((T0547)G143.CA, (T0547)I166.CB) [> 4.322 = 7.203 < 9.364] w=0.004 to rejected_constraints # Constraint # added constraint: constraint((T0547)L160.CB, (T0547)L218.CB) [> 4.040 = 6.733 < 8.753] w=0.004 to rejected_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)K171.CB) [> 4.708 = 7.847 < 10.201] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)I167.CB) [> 4.686 = 7.811 < 10.154] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)A165.CB) [> 4.565 = 7.609 < 9.892] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)A110.CB, (T0547)G133.CA) [> 4.681 = 7.801 < 10.142] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)K95.CB, (T0547)A119.CB) [> 4.610 = 7.684 < 9.989] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)V94.CB, (T0547)E115.CB) [> 3.711 = 6.184 < 8.040] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)F73.CB, (T0547)N297.CB) [> 2.735 = 4.559 < 5.927] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)F73.CB, (T0547)A296.CB) [> 3.908 = 6.514 < 8.468] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)E72.CB, (T0547)N297.CB) [> 4.747 = 7.911 < 10.284] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)R70.CB, (T0547)A296.CB) [> 3.489 = 5.815 < 7.560] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)A69.CB, (T0547)N297.CB) [> 4.311 = 7.185 < 9.341] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)A69.CB, (T0547)R293.CB) [> 2.887 = 4.811 < 6.254] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)A69.CB, (T0547)L292.CB) [> 3.831 = 6.386 < 8.301] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)F318.CB) [> 4.221 = 7.035 < 9.145] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)L292.CB, (T0547)F318.CB) [> 3.269 = 5.448 < 7.082] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)A296.CB) [> 4.739 = 7.899 < 10.269] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)L271.CB, (T0547)D298.CB) [> 4.473 = 7.455 < 9.691] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)A251.CB, (T0547)D298.CB) [> 4.289 = 7.148 < 9.292] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)N297.CB) [> 4.545 = 7.574 < 9.847] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)T291.CB) [> 4.290 = 7.150 < 9.295] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)K245.CB, (T0547)N297.CB) [> 3.765 = 6.275 < 8.157] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)L244.CB, (T0547)T291.CB) [> 2.532 = 4.219 < 5.485] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)I241.CB, (T0547)R293.CB) [> 4.563 = 7.605 < 9.886] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)I238.CB, (T0547)T291.CB) [> 4.049 = 6.748 < 8.773] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)M229.CB, (T0547)L258.CB) [> 4.667 = 7.778 < 10.111] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)H187.CB, (T0547)I238.CB) [> 4.497 = 7.494 < 9.743] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)E148.CB, (T0547)K171.CB) [> 3.884 = 6.474 < 8.416] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)E148.CB, (T0547)I169.CB) [> 4.262 = 7.103 < 9.234] w=0.003 to rejected_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)K102.CB) [> 3.092 = 5.153 < 6.699] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)G107.CA) [> 3.649 = 6.082 < 7.906] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)L97.CB) [> 4.426 = 7.377 < 9.591] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)L108.CB) [> 2.993 = 4.988 < 6.485] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)K86.CB, (T0547)L116.CB) [> 4.797 = 7.996 < 10.394] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)V87.CB, (T0547)S112.CB) [> 3.965 = 6.608 < 8.591] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y90.CB, (T0547)A114.CB) [> 4.711 = 7.852 < 10.208] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)A114.CB) [> 4.668 = 7.780 < 10.114] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)P91.CB, (T0547)E115.CB) [> 3.344 = 5.573 < 7.245] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)K113.CB, (T0547)A147.CB) [> 2.942 = 4.904 < 6.375] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)A121.CB, (T0547)M149.CB) [> 4.533 = 7.555 < 9.821] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)P84.CB, (T0547)L97.CB) [> 3.482 = 5.803 < 7.544] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)A81.CB, (T0547)A268.CB) [> 4.764 = 7.940 < 10.322] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)N80.CB, (T0547)L108.CB) [> 3.808 = 6.346 < 8.250] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)R70.CB, (T0547)N80.CB) [> 3.246 = 5.410 < 7.034] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)A69.CB, (T0547)N80.CB) [> 4.668 = 7.780 < 10.113] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)Y63.CB, (T0547)V82.CB) [> 3.810 = 6.349 < 8.254] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)I62.CB, (T0547)V82.CB) [> 3.926 = 6.543 < 8.506] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)D298.CB, (T0547)P315.CB) [> 3.739 = 6.232 < 8.102] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)D298.CB, (T0547)E314.CB) [> 3.266 = 5.444 < 7.077] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)D298.CB, (T0547)D312.CB) [> 3.821 = 6.369 < 8.280] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)N297.CB, (T0547)E314.CB) [> 4.596 = 7.661 < 9.959] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)N297.CB, (T0547)K311.CB) [> 4.737 = 7.895 < 10.263] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)P315.CB) [> 3.175 = 5.291 < 6.879] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)E314.CB) [> 4.693 = 7.821 < 10.168] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)A296.CB, (T0547)D312.CB) [> 3.242 = 5.403 < 7.024] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q281.CB, (T0547)L292.CB) [> 4.407 = 7.345 < 9.548] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)D312.CB) [> 3.420 = 5.701 < 7.411] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)G272.CA, (T0547)R288.CB) [> 2.801 = 4.669 < 6.069] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)G252.CA, (T0547)P315.CB) [> 4.774 = 7.956 < 10.343] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)N249.CB, (T0547)K311.CB) [> 4.710 = 7.850 < 10.205] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)L248.CB, (T0547)P315.CB) [> 4.050 = 6.750 < 8.775] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)T239.CB, (T0547)Q281.CB) [> 4.789 = 7.982 < 10.376] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q237.CB, (T0547)Q281.CB) [> 4.732 = 7.887 < 10.253] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)T228.CB, (T0547)L258.CB) [> 4.439 = 7.398 < 9.618] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)F227.CB, (T0547)G262.CA) [> 4.786 = 7.976 < 10.369] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)Q226.CB, (T0547)G262.CA) [> 4.731 = 7.885 < 10.251] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)S202.CB, (T0547)G235.CA) [> 4.514 = 7.523 < 9.780] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)N201.CB, (T0547)S236.CB) [> 4.175 = 6.958 < 9.045] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)A147.CB, (T0547)K171.CB) [> 4.748 = 7.913 < 10.287] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)A147.CB, (T0547)I167.CB) [> 4.719 = 7.866 < 10.225] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)A147.CB, (T0547)A165.CB) [> 4.521 = 7.535 < 9.796] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)A146.CB, (T0547)K171.CB) [> 3.884 = 6.474 < 8.416] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)F144.CB, (T0547)L224.CB) [> 4.727 = 7.879 < 10.242] w=0.001 to rejected_constraints # Constraint # added constraint: constraint((T0547)G143.CA, (T0547)A165.CB) [> 4.451 = 7.418 < 9.643] w=0.001 to rejected_constraints # future Constraint commands -> rejected_bonus # future HelixConstraint commands -> rejected_bonus # future StrandConstraint commands -> rejected_bonus # future SheetConstraint commands -> rejected_bonus # future Hbond commands -> rejected_bonus # future SSbond commands -> rejected_bonus # reading script from file rejected_bonus.constraints # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)Y122.CB) [> 3.116 = 5.194 < 6.752] w=0.996 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)L100.CB) [> 2.923 = 4.872 < 6.334] w=0.920 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)N124.CB) [> 3.633 = 6.055 < 7.871] w=0.916 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)N96.CB) [> 3.337 = 5.562 < 7.231] w=0.876 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)L97.CB) [> 4.109 = 6.848 < 8.902] w=0.799 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K95.CB, (T0547)Y122.CB) [> 3.385 = 5.642 < 7.334] w=0.797 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)L266.CB) [> 3.915 = 6.525 < 8.483] w=0.788 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)S403.CB) [> 3.931 = 6.551 < 8.517] w=0.784 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)V94.CB) [> 4.299 = 7.165 < 9.315] w=0.757 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)L349.CB) [> 3.865 = 6.442 < 8.375] w=0.757 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E60.CB, (T0547)L100.CB) [> 3.849 = 6.415 < 8.339] w=0.681 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)G107.CA) [> 4.367 = 7.279 < 9.462] w=0.679 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)L108.CB) [> 4.532 = 7.553 < 9.820] w=0.677 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)N404.CB) [> 4.005 = 6.675 < 8.678] w=0.651 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)I350.CB) [> 2.405 = 4.008 < 5.210] w=0.651 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)E225.CB) [> 3.800 = 6.333 < 8.233] w=0.614 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)I317.CB) [> 4.173 = 6.955 < 9.041] w=0.600 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)R402.CB) [> 3.491 = 5.818 < 7.564] w=0.598 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)F227.CB) [> 4.063 = 6.772 < 8.804] w=0.587 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)Y122.CB) [> 4.179 = 6.965 < 9.055] w=0.558 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)P243.CB) [> 3.553 = 5.922 < 7.699] w=0.558 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L224.CB) [> 4.029 = 6.715 < 8.730] w=0.548 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)F144.CB) [> 3.742 = 6.237 < 8.109] w=0.533 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I166.CB) [> 3.862 = 6.437 < 8.368] w=0.531 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L224.CB) [> 3.260 = 5.433 < 7.063] w=0.507 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E386.CB, (T0547)G395.CA) [> 3.982 = 6.637 < 8.628] w=0.505 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)M149.CB) [> 3.662 = 6.103 < 7.934] w=0.505 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)E225.CB) [> 3.583 = 5.972 < 7.763] w=0.494 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)E386.CB) [> 3.064 = 5.107 < 6.639] w=0.491 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)E225.CB) [> 3.644 = 6.073 < 7.895] w=0.481 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)L100.CB) [> 4.347 = 7.246 < 9.419] w=0.481 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)Y106.CB) [> 2.462 = 4.103 < 5.334] w=0.479 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)I254.CB) [> 3.851 = 6.419 < 8.344] w=0.478 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)N328.CB) [> 4.122 = 6.869 < 8.930] w=0.478 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)Y122.CB) [> 3.304 = 5.507 < 7.159] w=0.478 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)L223.CB) [> 3.910 = 6.517 < 8.472] w=0.467 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)F227.CB) [> 3.862 = 6.437 < 8.368] w=0.467 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)N124.CB) [> 3.847 = 6.412 < 8.335] w=0.465 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)G150.CA) [> 3.691 = 6.152 < 7.998] w=0.465 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)E210.CB) [> 3.736 = 6.226 < 8.094] w=0.452 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)Y396.CB) [> 3.089 = 5.148 < 6.692] w=0.452 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)G395.CA) [> 3.230 = 5.384 < 6.999] w=0.452 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K95.CB, (T0547)N124.CB) [> 4.272 = 7.119 < 9.255] w=0.438 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)L100.CB) [> 4.200 = 6.999 < 9.099] w=0.438 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K95.CB, (T0547)N123.CB) [> 3.965 = 6.608 < 8.590] w=0.438 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)L224.CB) [> 4.191 = 6.985 < 9.080] w=0.428 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G64.CA, (T0547)G77.CA) [> 3.404 = 5.673 < 7.374] w=0.412 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D383.CB, (T0547)Y396.CB) [> 3.882 = 6.470 < 8.411] w=0.412 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)E250.CB) [> 4.168 = 6.946 < 9.030] w=0.412 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)G101.CA) [> 3.789 = 6.315 < 8.210] w=0.398 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I169.CB, (T0547)P178.CB) [> 4.378 = 7.296 < 9.485] w=0.398 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)L206.CB) [> 4.382 = 7.303 < 9.494] w=0.398 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)I417.CB) [> 4.569 = 7.614 < 9.898] w=0.398 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K171.CB, (T0547)K222.CB) [> 4.337 = 7.229 < 9.397] w=0.398 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)L385.CB) [> 3.891 = 6.485 < 8.431] w=0.398 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G101.CA, (T0547)P128.CB) [> 4.547 = 7.579 < 9.853] w=0.398 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)D422.CB) [> 3.203 = 5.338 < 6.939] w=0.398 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)H151.CB) [> 4.209 = 7.015 < 9.119] w=0.389 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)M149.CB) [> 4.003 = 6.672 < 8.674] w=0.388 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)I142.CB) [> 3.636 = 6.059 < 7.877] w=0.388 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)K102.CB) [> 2.880 = 4.800 < 6.240] w=0.386 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)K102.CB) [> 3.168 = 5.280 < 6.864] w=0.386 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)A327.CB) [> 3.243 = 5.405 < 7.026] w=0.385 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)G395.CA) [> 3.928 = 6.547 < 8.511] w=0.385 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D383.CB, (T0547)D398.CB) [> 3.903 = 6.504 < 8.456] w=0.372 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)L394.CB) [> 3.058 = 5.096 < 6.625] w=0.372 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)E250.CB) [> 4.493 = 7.488 < 9.735] w=0.372 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)P178.CB) [> 4.392 = 7.320 < 9.516] w=0.363 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)K102.CB) [> 4.094 = 6.824 < 8.871] w=0.360 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)N96.CB) [> 4.225 = 7.042 < 9.155] w=0.359 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L54.CB, (T0547)A327.CB) [> 3.258 = 5.431 < 7.060] w=0.359 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)Y396.CB) [> 3.427 = 5.711 < 7.425] w=0.359 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E138.CB, (T0547)A165.CB) [> 3.772 = 6.287 < 8.173] w=0.359 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)G395.CA) [> 4.321 = 7.202 < 9.363] w=0.359 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)I302.CB) [> 2.951 = 4.918 < 6.393] w=0.359 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)K102.CB) [> 3.414 = 5.690 < 7.397] w=0.348 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)P178.CB) [> 3.630 = 6.050 < 7.865] w=0.347 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)I412.CB) [> 3.576 = 5.959 < 7.747] w=0.345 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)T413.CB) [> 3.790 = 6.317 < 8.212] w=0.345 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)I412.CB) [> 3.533 = 5.888 < 7.655] w=0.345 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P176.CB, (T0547)L223.CB) [> 4.219 = 7.032 < 9.141] w=0.345 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)T409.CB) [> 3.601 = 6.001 < 7.802] w=0.345 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)T409.CB) [> 3.364 = 5.607 < 7.289] w=0.345 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)K414.CB) [> 3.606 = 6.010 < 7.813] w=0.345 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)K414.CB) [> 2.654 = 4.424 < 5.751] w=0.345 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)G77.CA) [> 4.324 = 7.207 < 9.368] w=0.345 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)N253.CB) [> 3.960 = 6.601 < 8.581] w=0.345 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)A119.CB) [> 3.977 = 6.628 < 8.616] w=0.333 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)K367.CB) [> 3.645 = 6.075 < 7.898] w=0.332 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)L385.CB) [> 3.567 = 5.946 < 7.729] w=0.332 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)E320.CB) [> 4.613 = 7.688 < 9.995] w=0.332 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)L155.CB) [> 3.785 = 6.308 < 8.200] w=0.332 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)E386.CB) [> 2.735 = 4.559 < 5.927] w=0.332 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)E158.CB) [> 4.444 = 7.407 < 9.629] w=0.332 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)L408.CB) [> 3.578 = 5.963 < 7.752] w=0.332 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)K99.CB) [> 4.230 = 7.050 < 9.166] w=0.323 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L218.CB) [> 4.426 = 7.377 < 9.590] w=0.319 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)A327.CB) [> 4.551 = 7.585 < 9.861] w=0.319 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)N124.CB) [> 4.303 = 7.172 < 9.323] w=0.319 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)L411.CB) [> 3.382 = 5.637 < 7.328] w=0.319 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)L258.CB) [> 4.261 = 7.102 < 9.232] w=0.319 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)S387.CB) [> 4.016 = 6.693 < 8.701] w=0.319 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)K423.CB) [> 3.483 = 5.805 < 7.547] w=0.319 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)M261.CB) [> 3.705 = 6.175 < 8.028] w=0.319 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)A147.CB) [> 4.081 = 6.802 < 8.842] w=0.307 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)A268.CB) [> 3.447 = 5.746 < 7.470] w=0.307 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)D398.CB) [> 3.718 = 6.197 < 8.057] w=0.305 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R137.CB, (T0547)I169.CB) [> 3.832 = 6.387 < 8.304] w=0.305 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)E138.CB) [> 3.971 = 6.618 < 8.603] w=0.305 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A431.CB) [> 3.219 = 5.365 < 6.975] w=0.305 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I166.CB) [> 3.522 = 5.870 < 7.630] w=0.293 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)K264.CB) [> 3.832 = 6.387 < 8.303] w=0.292 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)G150.CA) [> 4.259 = 7.097 < 9.227] w=0.292 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)E257.CB) [> 4.084 = 6.806 < 8.848] w=0.292 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)R402.CB) [> 3.645 = 6.075 < 7.897] w=0.292 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)S372.CB) [> 4.317 = 7.195 < 9.353] w=0.292 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)S387.CB) [> 3.756 = 6.260 < 8.138] w=0.292 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)N141.CB) [> 3.060 = 5.100 < 6.630] w=0.292 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)Q400.CB) [> 4.022 = 6.704 < 8.715] w=0.292 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)A165.CB) [> 3.890 = 6.483 < 8.428] w=0.282 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)A119.CB) [> 4.570 = 7.617 < 9.903] w=0.282 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)E225.CB) [> 3.958 = 6.596 < 8.575] w=0.280 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)L266.CB) [> 3.856 = 6.427 < 8.355] w=0.280 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)Q226.CB) [> 4.011 = 6.684 < 8.690] w=0.280 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)P128.CB) [> 4.598 = 7.664 < 9.963] w=0.279 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)G150.CA) [> 3.943 = 6.572 < 8.543] w=0.279 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I417.CB) [> 4.254 = 7.090 < 9.217] w=0.279 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)Y396.CB) [> 4.403 = 7.338 < 9.539] w=0.279 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)P176.CB) [> 3.255 = 5.426 < 7.053] w=0.279 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)S387.CB) [> 3.940 = 6.567 < 8.537] w=0.279 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)K264.CB) [> 4.046 = 6.744 < 8.767] w=0.279 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)R402.CB) [> 4.024 = 6.707 < 8.719] w=0.279 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)S387.CB) [> 3.990 = 6.649 < 8.644] w=0.279 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)L418.CB) [> 4.180 = 6.967 < 9.057] w=0.279 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)D401.CB) [> 3.556 = 5.927 < 7.705] w=0.279 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)H329.CB) [> 4.489 = 7.481 < 9.726] w=0.279 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)I169.CB) [> 3.536 = 5.893 < 7.661] w=0.270 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)A247.CB) [> 3.274 = 5.457 < 7.094] w=0.268 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)E225.CB) [> 3.739 = 6.232 < 8.102] w=0.267 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)S381.CB) [> 4.012 = 6.686 < 8.692] w=0.266 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)P176.CB) [> 3.285 = 5.475 < 7.118] w=0.266 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)D393.CB) [> 3.102 = 5.169 < 6.720] w=0.266 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)L49.CB) [> 4.136 = 6.894 < 8.962] w=0.266 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)T130.CB) [> 3.549 = 5.915 < 7.689] w=0.266 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)G78.CA) [> 3.160 = 5.266 < 6.846] w=0.266 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)E386.CB) [> 4.381 = 7.301 < 9.491] w=0.266 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)A165.CB) [> 4.086 = 6.810 < 8.853] w=0.266 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)I407.CB) [> 3.127 = 5.211 < 6.774] w=0.266 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)Q400.CB) [> 3.388 = 5.647 < 7.341] w=0.266 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)R402.CB) [> 4.341 = 7.235 < 9.405] w=0.266 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)L399.CB) [> 3.549 = 5.915 < 7.690] w=0.266 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)I157.CB) [> 3.871 = 6.452 < 8.388] w=0.266 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)I417.CB) [> 3.708 = 6.179 < 8.033] w=0.266 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)V299.CB) [> 4.134 = 6.889 < 8.956] w=0.266 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)K222.CB) [> 4.538 = 7.564 < 9.833] w=0.256 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)K222.CB) [> 4.073 = 6.788 < 8.825] w=0.256 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)L224.CB) [> 4.609 = 7.682 < 9.986] w=0.255 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)A247.CB) [> 4.341 = 7.236 < 9.406] w=0.255 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)E225.CB) [> 4.167 = 6.944 < 9.028] w=0.254 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)I254.CB) [> 4.212 = 7.020 < 9.125] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)E285.CB) [> 3.453 = 5.755 < 7.481] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)L419.CB) [> 3.986 = 6.643 < 8.637] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)H384.CB) [> 3.525 = 5.875 < 7.637] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)M149.CB) [> 3.949 = 6.582 < 8.556] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)I333.CB) [> 3.300 = 5.500 < 7.150] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)I333.CB) [> 3.697 = 6.162 < 8.011] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)E285.CB) [> 3.467 = 5.778 < 7.511] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)N328.CB) [> 4.184 = 6.973 < 9.065] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)G395.CA) [> 4.188 = 6.981 < 9.075] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)H410.CB) [> 4.244 = 7.074 < 9.196] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)L418.CB) [> 4.506 = 7.510 < 9.763] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)G395.CA) [> 3.432 = 5.721 < 7.437] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)S403.CB) [> 3.573 = 5.955 < 7.742] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N141.CB, (T0547)I166.CB) [> 3.463 = 5.771 < 7.503] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)L411.CB) [> 4.236 = 7.060 < 9.178] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)T409.CB) [> 3.977 = 6.629 < 8.617] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)E257.CB) [> 3.730 = 6.217 < 8.082] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)A416.CB) [> 3.919 = 6.531 < 8.490] w=0.252 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)N152.CB) [> 3.764 = 6.273 < 8.155] w=0.243 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E164.CB, (T0547)N221.CB) [> 4.459 = 7.431 < 9.660] w=0.243 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)I169.CB) [> 3.865 = 6.442 < 8.375] w=0.242 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)A263.CB) [> 3.846 = 6.410 < 8.333] w=0.240 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)L399.CB) [> 4.484 = 7.473 < 9.715] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E148.CB, (T0547)F174.CB) [> 3.865 = 6.441 < 8.373] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G150.CA, (T0547)P176.CB) [> 4.474 = 7.457 < 9.694] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N373.CB, (T0547)I407.CB) [> 3.804 = 6.340 < 8.242] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)Y122.CB) [> 4.637 = 7.728 < 10.046] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)N124.CB) [> 4.339 = 7.231 < 9.401] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)F134.CB) [> 3.472 = 5.787 < 7.523] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E60.CB, (T0547)G101.CA) [> 4.292 = 7.154 < 9.300] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)L49.CB) [> 3.612 = 6.021 < 7.827] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)D393.CB) [> 3.304 = 5.507 < 7.159] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)I412.CB) [> 4.206 = 7.011 < 9.114] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K171.CB, (T0547)L224.CB) [> 3.517 = 5.862 < 7.621] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)K415.CB) [> 3.182 = 5.303 < 6.894] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)Q424.CB) [> 3.178 = 5.296 < 6.885] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)L399.CB) [> 3.796 = 6.326 < 8.224] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)K423.CB) [> 4.125 = 6.875 < 8.937] w=0.239 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)V131.CB) [> 3.640 = 6.067 < 7.887] w=0.227 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)Q226.CB) [> 3.894 = 6.489 < 8.436] w=0.227 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)Q424.CB) [> 4.327 = 7.212 < 9.375] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)F444.CB) [> 3.410 = 5.683 < 7.388] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)A251.CB) [> 4.397 = 7.328 < 9.527] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)A296.CB) [> 4.596 = 7.660 < 9.958] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L217.CB) [> 4.118 = 6.863 < 8.922] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)K102.CB) [> 4.632 = 7.721 < 10.037] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)P335.CB) [> 4.043 = 6.738 < 8.759] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)Y396.CB) [> 3.633 = 6.056 < 7.872] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)N425.CB) [> 4.427 = 7.378 < 9.591] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)L408.CB) [> 4.033 = 6.721 < 8.737] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)T409.CB) [> 4.338 = 7.230 < 9.398] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N141.CB, (T0547)A165.CB) [> 3.772 = 6.287 < 8.173] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)I388.CB) [> 3.762 = 6.270 < 8.151] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N141.CB, (T0547)L155.CB) [> 4.319 = 7.198 < 9.357] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)K286.CB) [> 3.721 = 6.202 < 8.063] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)A170.CB) [> 3.792 = 6.320 < 8.215] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)D380.CB) [> 3.811 = 6.352 < 8.257] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)D298.CB) [> 3.767 = 6.278 < 8.162] w=0.215 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)G262.CA) [> 4.043 = 6.738 < 8.759] w=0.215 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)I169.CB) [> 3.733 = 6.222 < 8.088] w=0.214 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)A170.CB) [> 3.332 = 5.554 < 7.220] w=0.214 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)K414.CB) [> 4.599 = 7.665 < 9.965] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)E250.CB) [> 4.000 = 6.667 < 8.667] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)L394.CB) [> 3.900 = 6.500 < 8.450] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)H410.CB) [> 3.097 = 5.162 < 6.711] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)E406.CB) [> 3.662 = 6.103 < 7.934] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)P176.CB) [> 3.182 = 5.303 < 6.894] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)F174.CB) [> 3.540 = 5.900 < 7.670] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)F174.CB) [> 3.527 = 5.878 < 7.641] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)F144.CB) [> 4.272 = 7.119 < 9.255] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)N152.CB) [> 3.870 = 6.450 < 8.384] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)Q400.CB) [> 3.415 = 5.692 < 7.400] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)G395.CA) [> 4.285 = 7.141 < 9.284] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)P128.CB) [> 3.050 = 5.083 < 6.607] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L419.CB) [> 3.749 = 6.249 < 8.124] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)K310.CB) [> 4.196 = 6.993 < 9.091] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)E148.CB) [> 3.822 = 6.371 < 8.282] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)L420.CB) [> 3.348 = 5.580 < 7.254] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)D401.CB) [> 3.483 = 5.805 < 7.547] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)Q400.CB) [> 3.376 = 5.627 < 7.316] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)R183.CB) [> 3.719 = 6.198 < 8.058] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N141.CB, (T0547)A170.CB) [> 3.757 = 6.261 < 8.139] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)L420.CB) [> 3.930 = 6.550 < 8.515] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)D422.CB) [> 4.069 = 6.782 < 8.816] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)I333.CB) [> 3.543 = 5.904 < 7.676] w=0.212 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)N265.CB) [> 4.110 = 6.850 < 8.905] w=0.203 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L223.CB) [> 4.220 = 7.033 < 9.144] w=0.202 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)E225.CB) [> 3.925 = 6.542 < 8.504] w=0.201 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)I142.CB) [> 4.310 = 7.183 < 9.338] w=0.201 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)F174.CB) [> 3.572 = 5.954 < 7.740] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D434.CB, (T0547)N443.CB) [> 4.101 = 6.835 < 8.886] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)L399.CB) [> 3.949 = 6.582 < 8.556] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)V98.CB) [> 4.408 = 7.347 < 9.552] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)Y396.CB) [> 3.915 = 6.525 < 8.483] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)N124.CB) [> 4.527 = 7.545 < 9.809] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)R293.CB) [> 4.384 = 7.307 < 9.499] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G64.CA, (T0547)G78.CA) [> 4.356 = 7.260 < 9.438] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)S208.CB) [> 3.356 = 5.593 < 7.271] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)T207.CB) [> 4.065 = 6.774 < 8.807] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)V331.CB) [> 4.317 = 7.195 < 9.353] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)Y279.CB) [> 4.613 = 7.688 < 9.995] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K57.CB, (T0547)A327.CB) [> 4.435 = 7.391 < 9.609] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)F79.CB) [> 4.445 = 7.409 < 9.631] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)G92.CA) [> 4.629 = 7.716 < 10.031] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)G126.CA) [> 4.098 = 6.829 < 8.878] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I153.CB) [> 3.289 = 5.482 < 7.127] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)Y396.CB) [> 3.426 = 5.709 < 7.422] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)T154.CB) [> 3.984 = 6.639 < 8.631] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)G150.CA) [> 4.446 = 7.409 < 9.632] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)H329.CB) [> 3.805 = 6.341 < 8.244] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)N88.CB) [> 3.419 = 5.698 < 7.407] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)T130.CB) [> 3.588 = 5.980 < 7.774] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)T130.CB) [> 3.983 = 6.638 < 8.629] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)R402.CB) [> 4.338 = 7.230 < 9.399] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)R402.CB) [> 4.001 = 6.669 < 8.670] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)I169.CB) [> 3.683 = 6.138 < 7.979] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)I417.CB) [> 3.817 = 6.361 < 8.270] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L418.CB) [> 4.142 = 6.904 < 8.975] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)A405.CB) [> 3.879 = 6.465 < 8.404] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)A405.CB) [> 3.939 = 6.566 < 8.535] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)S372.CB) [> 3.117 = 5.195 < 6.754] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I142.CB) [> 4.007 = 6.678 < 8.681] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)D401.CB) [> 4.070 = 6.784 < 8.819] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)D401.CB) [> 3.715 = 6.191 < 8.048] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S387.CB, (T0547)N425.CB) [> 4.490 = 7.484 < 9.729] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)D422.CB) [> 4.114 = 6.856 < 8.913] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)N425.CB) [> 4.117 = 6.862 < 8.921] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H242.CB, (T0547)D298.CB) [> 4.388 = 7.313 < 9.507] w=0.199 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)A127.CB) [> 3.829 = 6.382 < 8.297] w=0.190 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)G395.CA) [> 3.429 = 5.716 < 7.430] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N373.CB, (T0547)E406.CB) [> 3.448 = 5.746 < 7.470] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)G395.CA) [> 4.305 = 7.175 < 9.328] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)P243.CB) [> 3.560 = 5.934 < 7.714] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)P243.CB) [> 3.892 = 6.486 < 8.432] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T256.CB, (T0547)I306.CB) [> 4.220 = 7.034 < 9.144] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)G395.CA) [> 3.800 = 6.333 < 8.233] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)D401.CB) [> 4.126 = 6.877 < 8.940] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)K264.CB) [> 4.040 = 6.734 < 8.754] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)Y255.CB) [> 4.109 = 6.849 < 8.903] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)H384.CB) [> 3.377 = 5.629 < 7.318] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)G395.CA) [> 3.895 = 6.491 < 8.439] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)Q400.CB) [> 3.805 = 6.342 < 8.245] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)F144.CB) [> 3.212 = 5.353 < 6.958] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)M149.CB) [> 3.375 = 5.625 < 7.312] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)E386.CB) [> 4.361 = 7.268 < 9.448] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L418.CB) [> 3.945 = 6.575 < 8.547] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)N141.CB) [> 4.068 = 6.780 < 8.813] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)A416.CB) [> 3.798 = 6.329 < 8.228] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)A307.CB) [> 4.158 = 6.931 < 9.010] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N249.CB, (T0547)I306.CB) [> 3.416 = 5.693 < 7.400] w=0.186 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)G77.CA) [> 3.348 = 5.581 < 7.255] w=0.177 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)P178.CB) [> 4.437 = 7.396 < 9.614] w=0.177 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)G262.CA) [> 3.834 = 6.390 < 8.307] w=0.175 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)H379.CB) [> 2.903 = 4.838 < 6.289] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)L378.CB) [> 4.012 = 6.687 < 8.694] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)Q437.CB) [> 3.878 = 6.463 < 8.402] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)K352.CB) [> 3.842 = 6.403 < 8.324] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)A431.CB) [> 4.129 = 6.881 < 8.945] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P176.CB, (T0547)L224.CB) [> 4.163 = 6.938 < 9.019] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)L394.CB) [> 4.065 = 6.776 < 8.808] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)I238.CB) [> 3.940 = 6.567 < 8.536] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)Q400.CB) [> 3.344 = 5.573 < 7.245] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)L418.CB) [> 4.631 = 7.718 < 10.034] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G101.CA, (T0547)N124.CB) [> 4.462 = 7.437 < 9.668] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)K310.CB) [> 4.308 = 7.181 < 9.335] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)S321.CB) [> 3.294 = 5.490 < 7.137] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)Y396.CB) [> 3.710 = 6.184 < 8.039] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)I556.CB) [> 4.088 = 6.813 < 8.857] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)M149.CB) [> 3.561 = 5.934 < 7.715] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)I166.CB) [> 3.625 = 6.042 < 7.855] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)F134.CB) [> 4.163 = 6.938 < 9.020] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)Y396.CB) [> 3.437 = 5.728 < 7.447] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)V277.CB) [> 4.219 = 7.031 < 9.140] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)L385.CB) [> 3.633 = 6.055 < 7.871] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)D383.CB) [> 4.493 = 7.488 < 9.735] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)S387.CB) [> 3.913 = 6.521 < 8.478] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)D383.CB) [> 4.200 = 7.000 < 9.100] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)D383.CB) [> 3.735 = 6.224 < 8.092] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)H384.CB) [> 4.148 = 6.913 < 8.987] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)K348.CB) [> 3.346 = 5.576 < 7.249] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)A147.CB) [> 3.871 = 6.451 < 8.386] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)L399.CB) [> 3.847 = 6.412 < 8.335] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)G395.CA) [> 4.392 = 7.320 < 9.516] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G150.CA, (T0547)P178.CB) [> 4.019 = 6.698 < 8.708] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)S387.CB) [> 3.332 = 5.553 < 7.219] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)P426.CB) [> 3.098 = 5.163 < 6.711] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)Q424.CB) [> 3.811 = 6.352 < 8.258] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E386.CB, (T0547)N425.CB) [> 3.802 = 6.337 < 8.238] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)N425.CB) [> 2.963 = 4.938 < 6.420] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)Q424.CB) [> 3.776 = 6.294 < 8.182] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D383.CB, (T0547)F392.CB) [> 3.793 = 6.322 < 8.219] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)F392.CB) [> 3.327 = 5.545 < 7.209] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)T413.CB) [> 3.748 = 6.247 < 8.120] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)H410.CB) [> 3.477 = 5.795 < 7.534] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)A247.CB) [> 4.461 = 7.436 < 9.666] w=0.173 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)T154.CB) [> 4.324 = 7.207 < 9.369] w=0.163 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T256.CB, (T0547)K311.CB) [> 3.649 = 6.082 < 7.907] w=0.161 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)E158.CB) [> 4.359 = 7.265 < 9.444] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E240.CB, (T0547)K286.CB) [> 4.420 = 7.367 < 9.577] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q281.CB, (T0547)S368.CB) [> 3.967 = 6.612 < 8.595] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)L394.CB) [> 3.933 = 6.555 < 8.522] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)N541.CB) [> 2.597 = 4.329 < 5.627] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)S381.CB) [> 4.076 = 6.794 < 8.832] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)L385.CB) [> 3.444 = 5.739 < 7.461] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)H379.CB) [> 4.140 = 6.900 < 8.970] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)G78.CA) [> 2.725 = 4.542 < 5.905] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G64.CA, (T0547)R293.CB) [> 4.656 = 7.760 < 10.088] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)N297.CB) [> 4.499 = 7.498 < 9.747] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K171.CB, (T0547)N221.CB) [> 3.659 = 6.098 < 7.928] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)D312.CB) [> 3.677 = 6.128 < 7.967] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)S445.CB) [> 4.532 = 7.553 < 9.819] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)E435.CB) [> 3.574 = 5.957 < 7.744] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)E438.CB) [> 4.055 = 6.759 < 8.787] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)H233.CB) [> 3.570 = 5.949 < 7.734] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A247.CB) [> 3.883 = 6.471 < 8.413] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)L394.CB) [> 4.105 = 6.842 < 8.894] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)V397.CB) [> 4.083 = 6.804 < 8.845] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)D393.CB) [> 4.003 = 6.672 < 8.673] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)K352.CB) [> 4.654 = 7.756 < 10.083] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)I319.CB) [> 3.066 = 5.111 < 6.644] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)L271.CB) [> 4.043 = 6.739 < 8.760] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K99.CB, (T0547)N123.CB) [> 4.518 = 7.529 < 9.788] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)A119.CB) [> 4.596 = 7.659 < 9.957] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)L303.CB) [> 4.386 = 7.310 < 9.503] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)E386.CB) [> 3.763 = 6.272 < 8.153] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)D383.CB) [> 3.510 = 5.851 < 7.606] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)T390.CB) [> 3.869 = 6.448 < 8.382] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)D401.CB) [> 4.137 = 6.896 < 8.964] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)G395.CA) [> 3.578 = 5.964 < 7.753] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)D398.CB) [> 3.575 = 5.959 < 7.747] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)Q400.CB) [> 3.522 = 5.869 < 7.630] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)D401.CB) [> 3.137 = 5.228 < 6.796] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)L430.CB) [> 4.136 = 6.893 < 8.961] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)S445.CB) [> 4.009 = 6.681 < 8.685] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K57.CB, (T0547)L100.CB) [> 4.560 = 7.600 < 9.880] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)L97.CB) [> 4.659 = 7.765 < 10.094] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)G150.CA) [> 4.680 = 7.799 < 10.139] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)K286.CB) [> 3.374 = 5.624 < 7.311] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)S403.CB) [> 3.544 = 5.907 < 7.679] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)D401.CB) [> 3.997 = 6.662 < 8.660] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)T413.CB) [> 3.938 = 6.562 < 8.531] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)D398.CB) [> 4.195 = 6.991 < 9.088] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)F227.CB) [> 3.766 = 6.278 < 8.161] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)I350.CB) [> 2.542 = 4.236 < 5.507] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)I350.CB) [> 4.097 = 6.828 < 8.877] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)L258.CB) [> 4.200 = 6.999 < 9.099] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I254.CB) [> 4.020 = 6.699 < 8.709] w=0.159 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)I166.CB) [> 3.904 = 6.506 < 8.458] w=0.150 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)K135.CB) [> 3.771 = 6.285 < 8.170] w=0.147 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)E314.CB) [> 3.380 = 5.633 < 7.323] w=0.147 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)E542.CB) [> 4.329 = 7.215 < 9.379] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)I407.CB) [> 3.501 = 5.835 < 7.586] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)I407.CB) [> 4.045 = 6.741 < 8.764] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)I407.CB) [> 3.401 = 5.669 < 7.369] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)Y545.CB) [> 3.666 = 6.110 < 7.943] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)E435.CB) [> 3.817 = 6.361 < 8.270] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)I417.CB) [> 3.295 = 5.492 < 7.140] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)T209.CB) [> 3.542 = 5.903 < 7.674] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)T413.CB) [> 3.365 = 5.608 < 7.290] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)H379.CB) [> 4.335 = 7.225 < 9.393] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)H384.CB) [> 4.308 = 7.179 < 9.333] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)D383.CB) [> 4.509 = 7.515 < 9.770] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)G235.CA) [> 3.371 = 5.618 < 7.303] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)Q237.CB) [> 3.139 = 5.231 < 6.800] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)A307.CB) [> 4.555 = 7.592 < 9.870] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)I333.CB) [> 3.526 = 5.877 < 7.640] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)D434.CB) [> 3.792 = 6.319 < 8.215] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)S368.CB) [> 4.072 = 6.787 < 8.823] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)S381.CB) [> 3.905 = 6.508 < 8.460] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)N443.CB) [> 4.085 = 6.808 < 8.850] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)E148.CB) [> 4.246 = 7.077 < 9.200] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)I412.CB) [> 4.153 = 6.922 < 8.999] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)L394.CB) [> 3.776 = 6.293 < 8.181] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)L394.CB) [> 3.524 = 5.873 < 7.635] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)G133.CA) [> 4.428 = 7.380 < 9.594] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)F174.CB) [> 4.040 = 6.733 < 8.754] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)P356.CB) [> 4.659 = 7.764 < 10.094] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)K135.CB) [> 4.165 = 6.942 < 9.025] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)V325.CB) [> 4.425 = 7.375 < 9.588] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)L385.CB) [> 4.146 = 6.910 < 8.983] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N216.CB, (T0547)A263.CB) [> 4.281 = 7.135 < 9.276] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)F444.CB) [> 4.277 = 7.128 < 9.266] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)E125.CB) [> 4.489 = 7.482 < 9.727] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)K286.CB) [> 3.724 = 6.206 < 8.068] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)Q400.CB) [> 4.198 = 6.996 < 9.095] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D383.CB, (T0547)L399.CB) [> 4.300 = 7.167 < 9.317] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)L408.CB) [> 4.146 = 6.910 < 8.983] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)T409.CB) [> 4.131 = 6.885 < 8.951] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)L446.CB) [> 3.957 = 6.595 < 8.574] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)S321.CB) [> 3.409 = 5.682 < 7.387] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)G262.CA) [> 3.963 = 6.604 < 8.586] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)V277.CB) [> 3.810 = 6.349 < 8.254] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L275.CB) [> 4.409 = 7.349 < 9.554] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)V397.CB) [> 3.444 = 5.740 < 7.462] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)N88.CB) [> 4.535 = 7.558 < 9.825] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)N179.CB) [> 4.290 = 7.149 < 9.294] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)H151.CB) [> 4.277 = 7.128 < 9.267] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)D401.CB) [> 4.285 = 7.142 < 9.284] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)G395.CA) [> 3.887 = 6.479 < 8.423] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)A416.CB) [> 4.347 = 7.245 < 9.418] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)D383.CB) [> 4.294 = 7.157 < 9.304] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)D393.CB) [> 3.338 = 5.564 < 7.233] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)H410.CB) [> 3.534 = 5.890 < 7.657] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I350.CB) [> 4.543 = 7.571 < 9.842] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)D383.CB) [> 3.645 = 6.075 < 7.897] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)E386.CB) [> 3.881 = 6.468 < 8.408] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)I306.CB) [> 4.447 = 7.412 < 9.636] w=0.146 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)T156.CB) [> 4.177 = 6.962 < 9.051] w=0.137 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)P178.CB) [> 3.246 = 5.409 < 7.032] w=0.137 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D168.CB, (T0547)L223.CB) [> 4.660 = 7.767 < 10.098] w=0.135 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)M149.CB) [> 4.276 = 7.127 < 9.265] w=0.134 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)P315.CB) [> 4.241 = 7.069 < 9.190] w=0.134 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)Q433.CB) [> 3.789 = 6.315 < 8.209] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)I407.CB) [> 4.013 = 6.688 < 8.694] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E37.CB, (T0547)I407.CB) [> 3.787 = 6.311 < 8.204] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)Q433.CB) [> 3.464 = 5.773 < 7.505] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I432.CB) [> 4.688 = 7.813 < 10.157] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)D434.CB) [> 3.240 = 5.400 < 7.020] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)S287.CB) [> 3.174 = 5.290 < 6.877] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)I417.CB) [> 4.571 = 7.619 < 9.905] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)A431.CB) [> 3.372 = 5.620 < 7.307] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)S381.CB) [> 3.606 = 6.010 < 7.813] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)Q400.CB) [> 3.077 = 5.128 < 6.666] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)D398.CB) [> 4.268 = 7.113 < 9.247] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E285.CB, (T0547)Y295.CB) [> 4.283 = 7.139 < 9.280] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)K367.CB) [> 4.629 = 7.716 < 10.030] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)L399.CB) [> 4.358 = 7.264 < 9.443] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)S287.CB) [> 3.986 = 6.643 < 8.636] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)R402.CB) [> 4.250 = 7.083 < 9.208] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)N541.CB) [> 3.561 = 5.934 < 7.715] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)T409.CB) [> 3.626 = 6.044 < 7.857] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)S321.CB) [> 4.629 = 7.714 < 10.029] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)D398.CB) [> 3.747 = 6.245 < 8.118] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)L394.CB) [> 3.471 = 5.785 < 7.520] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)K177.CB) [> 4.074 = 6.790 < 8.827] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)D393.CB) [> 4.097 = 6.829 < 8.878] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)L303.CB) [> 4.375 = 7.292 < 9.480] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I254.CB) [> 4.327 = 7.211 < 9.374] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)K357.CB) [> 4.590 = 7.649 < 9.944] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)V300.CB) [> 4.609 = 7.682 < 9.987] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)I302.CB) [> 3.865 = 6.441 < 8.374] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)H384.CB) [> 3.545 = 5.908 < 7.681] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)E406.CB) [> 4.380 = 7.299 < 9.489] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)D401.CB) [> 3.550 = 5.917 < 7.692] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)A427.CB) [> 4.213 = 7.022 < 9.128] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)L408.CB) [> 4.626 = 7.710 < 10.023] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)F447.CB) [> 3.569 = 5.948 < 7.733] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)L258.CB) [> 3.388 = 5.646 < 7.340] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)Y255.CB) [> 3.059 = 5.098 < 6.627] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)V191.CB) [> 3.015 = 5.025 < 6.532] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)E314.CB) [> 4.028 = 6.713 < 8.727] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)I556.CB) [> 4.137 = 6.895 < 8.964] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)Y396.CB) [> 3.419 = 5.698 < 7.407] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)Y396.CB) [> 4.180 = 6.966 < 9.056] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)V397.CB) [> 3.516 = 5.861 < 7.619] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E386.CB, (T0547)Y396.CB) [> 3.048 = 5.080 < 6.604] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N141.CB, (T0547)P178.CB) [> 4.225 = 7.042 < 9.155] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)L385.CB) [> 3.785 = 6.309 < 8.202] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)P178.CB) [> 4.281 = 7.135 < 9.276] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)Y396.CB) [> 4.085 = 6.809 < 8.851] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)L155.CB) [> 3.194 = 5.323 < 6.920] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)R288.CB) [> 3.516 = 5.861 < 7.619] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)I417.CB) [> 4.466 = 7.444 < 9.677] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)T413.CB) [> 3.995 = 6.659 < 8.656] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)N425.CB) [> 4.531 = 7.552 < 9.818] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)A268.CB) [> 4.223 = 7.038 < 9.150] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)H410.CB) [> 4.055 = 6.759 < 8.787] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)D136.CB) [> 4.610 = 7.684 < 9.989] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)Y295.CB) [> 4.424 = 7.374 < 9.586] w=0.133 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)L292.CB) [> 4.351 = 7.252 < 9.428] w=0.122 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)Y295.CB) [> 3.416 = 5.694 < 7.402] w=0.122 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)E294.CB) [> 4.051 = 6.751 < 8.777] w=0.122 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)I166.CB) [> 4.398 = 7.330 < 9.529] w=0.122 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)K311.CB) [> 4.678 = 7.796 < 10.135] w=0.121 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)I432.CB) [> 3.845 = 6.409 < 8.332] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I140.CB) [> 4.545 = 7.575 < 9.847] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)N141.CB) [> 4.512 = 7.520 < 9.776] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)G198.CA) [> 3.581 = 5.968 < 7.759] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)L378.CB) [> 3.950 = 6.584 < 8.559] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)A431.CB) [> 4.271 = 7.118 < 9.253] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)K423.CB) [> 4.227 = 7.045 < 9.159] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)F392.CB) [> 3.367 = 5.612 < 7.296] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)Y396.CB) [> 4.162 = 6.936 < 9.017] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)K414.CB) [> 3.934 = 6.556 < 8.523] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)I412.CB) [> 4.436 = 7.393 < 9.611] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)A427.CB) [> 3.950 = 6.583 < 8.558] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)D428.CB) [> 4.298 = 7.163 < 9.312] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)H410.CB) [> 3.805 = 6.342 < 8.244] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)F453.CB) [> 3.531 = 5.886 < 7.651] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)Q448.CB) [> 2.000 = 3.334 < 4.334] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)N96.CB) [> 4.612 = 7.687 < 9.993] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)Y295.CB) [> 3.885 = 6.475 < 8.418] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)E294.CB) [> 3.560 = 5.933 < 7.713] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)G252.CA) [> 4.614 = 7.691 < 9.998] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)N80.CB) [> 4.660 = 7.767 < 10.097] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)Y106.CB) [> 4.263 = 7.104 < 9.236] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)A119.CB) [> 4.621 = 7.701 < 10.011] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)I238.CB) [> 3.866 = 6.443 < 8.376] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)K310.CB) [> 4.388 = 7.314 < 9.508] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)L394.CB) [> 4.046 = 6.743 < 8.766] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)F392.CB) [> 4.325 = 7.209 < 9.372] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q424.CB, (T0547)Q448.CB) [> 4.145 = 6.909 < 8.981] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)F174.CB) [> 3.861 = 6.435 < 8.365] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)E548.CB) [> 3.400 = 5.666 < 7.366] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)E548.CB) [> 3.707 = 6.178 < 8.032] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)K370.CB) [> 4.159 = 6.931 < 9.011] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)S372.CB) [> 2.523 = 4.206 < 5.467] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)F51.CB) [> 2.863 = 4.772 < 6.203] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)P52.CB) [> 4.245 = 7.075 < 9.197] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)H53.CB) [> 3.569 = 5.948 < 7.733] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)I407.CB) [> 3.775 = 6.292 < 8.179] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)T409.CB) [> 3.686 = 6.143 < 7.986] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)L155.CB) [> 4.193 = 6.988 < 9.085] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)I153.CB) [> 3.363 = 5.605 < 7.286] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)I388.CB) [> 3.951 = 6.585 < 8.561] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)L275.CB) [> 3.447 = 5.746 < 7.469] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)L420.CB) [> 3.790 = 6.317 < 8.212] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)E220.CB) [> 4.053 = 6.755 < 8.782] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)E220.CB) [> 3.800 = 6.334 < 8.234] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)E278.CB) [> 4.177 = 6.961 < 9.050] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)N221.CB) [> 4.601 = 7.669 < 9.969] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)S387.CB) [> 4.279 = 7.131 < 9.271] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)D312.CB) [> 4.532 = 7.554 < 9.820] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D383.CB, (T0547)G395.CA) [> 4.168 = 6.946 < 9.030] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)L408.CB) [> 4.069 = 6.782 < 8.816] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E37.CB, (T0547)L408.CB) [> 3.787 = 6.312 < 8.205] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)L408.CB) [> 3.386 = 5.643 < 7.335] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L275.CB) [> 4.420 = 7.366 < 9.576] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G64.CA, (T0547)L292.CB) [> 4.581 = 7.635 < 9.925] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)A121.CB) [> 4.644 = 7.740 < 10.062] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I306.CB, (T0547)P315.CB) [> 3.657 = 6.094 < 7.922] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)F392.CB) [> 4.128 = 6.880 < 8.944] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)A127.CB) [> 4.542 = 7.570 < 9.841] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)T413.CB) [> 3.280 = 5.466 < 7.106] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L411.CB) [> 2.999 = 4.998 < 6.498] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)I412.CB) [> 3.910 = 6.516 < 8.471] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)T413.CB) [> 2.848 = 4.746 < 6.170] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)H410.CB) [> 4.124 = 6.874 < 8.936] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)L411.CB) [> 2.250 = 3.750 < 4.875] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)F318.CB) [> 4.043 = 6.738 < 8.759] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)D398.CB) [> 4.282 = 7.137 < 9.278] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)V397.CB) [> 3.015 = 5.024 < 6.532] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)V397.CB) [> 4.047 = 6.745 < 8.768] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)L337.CB) [> 4.538 = 7.563 < 9.832] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)I153.CB) [> 4.270 = 7.117 < 9.252] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)K311.CB) [> 3.826 = 6.376 < 8.289] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)I319.CB) [> 3.890 = 6.483 < 8.428] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)L385.CB) [> 2.861 = 4.768 < 6.198] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)H384.CB) [> 4.163 = 6.939 < 9.020] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L385.CB) [> 4.458 = 7.430 < 9.659] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)P178.CB) [> 4.330 = 7.217 < 9.382] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)T413.CB) [> 4.064 = 6.773 < 8.804] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)E386.CB) [> 4.588 = 7.646 < 9.940] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)D401.CB) [> 3.843 = 6.404 < 8.326] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)R288.CB) [> 3.930 = 6.549 < 8.514] w=0.120 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)A327.CB) [> 4.509 = 7.516 < 9.770] w=0.119 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)I254.CB) [> 4.582 = 7.637 < 9.929] w=0.119 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)G205.CA) [> 4.677 = 7.795 < 10.134] w=0.110 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)I166.CB) [> 4.434 = 7.390 < 9.607] w=0.108 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)A147.CB) [> 4.522 = 7.536 < 9.797] w=0.108 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E435.CB, (T0547)F444.CB) [> 3.199 = 5.331 < 6.930] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)S445.CB) [> 2.711 = 4.518 < 5.874] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)L446.CB) [> 3.887 = 6.478 < 8.422] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)S445.CB) [> 4.612 = 7.687 < 9.993] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)L411.CB) [> 4.391 = 7.318 < 9.513] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)H410.CB) [> 4.389 = 7.315 < 9.510] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)S403.CB) [> 4.174 = 6.957 < 9.045] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)D401.CB) [> 4.043 = 6.739 < 8.761] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)S403.CB) [> 3.752 = 6.253 < 8.129] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)K582.CB) [> 3.978 = 6.630 < 8.619] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G549.CA, (T0547)K582.CB) [> 2.862 = 4.770 < 6.200] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G549.CA, (T0547)L583.CB) [> 4.674 = 7.789 < 10.126] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)G322.CA) [> 3.141 = 5.235 < 6.805] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)R323.CB) [> 2.709 = 4.515 < 5.869] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)S321.CB) [> 3.323 = 5.538 < 7.200] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K102.CB, (T0547)S321.CB) [> 4.479 = 7.464 < 9.704] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)L271.CB) [> 3.812 = 6.353 < 8.259] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)M261.CB) [> 3.875 = 6.458 < 8.396] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)E548.CB) [> 3.640 = 6.067 < 7.887] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)V547.CB) [> 4.047 = 6.744 < 8.768] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)V131.CB) [> 4.181 = 6.969 < 9.059] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)G395.CA) [> 4.449 = 7.416 < 9.640] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)I166.CB) [> 4.428 = 7.380 < 9.594] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S539.CB, (T0547)E548.CB) [> 2.839 = 4.732 < 6.152] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)L139.CB) [> 4.313 = 7.189 < 9.346] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K28.CB, (T0547)E37.CB) [> 3.554 = 5.924 < 7.701] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K28.CB, (T0547)S372.CB) [> 4.109 = 6.848 < 8.902] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K28.CB, (T0547)N373.CB) [> 3.898 = 6.496 < 8.445] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E37.CB, (T0547)N373.CB) [> 3.951 = 6.585 < 8.561] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)L583.CB) [> 3.819 = 6.366 < 8.275] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)I432.CB) [> 4.257 = 7.095 < 9.224] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)D434.CB) [> 3.876 = 6.460 < 8.397] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)D434.CB) [> 4.023 = 6.705 < 8.717] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)K415.CB) [> 4.605 = 7.675 < 9.978] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)I417.CB) [> 4.553 = 7.588 < 9.864] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)Q433.CB) [> 3.906 = 6.509 < 8.462] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)P243.CB) [> 2.869 = 4.782 < 6.217] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E240.CB, (T0547)R288.CB) [> 4.405 = 7.342 < 9.545] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)I382.CB) [> 4.277 = 7.128 < 9.266] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)F392.CB) [> 4.035 = 6.724 < 8.742] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)L391.CB) [> 3.762 = 6.269 < 8.150] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)G395.CA) [> 2.575 = 4.291 < 5.579] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)Y396.CB) [> 4.119 = 6.866 < 8.925] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)L389.CB) [> 2.859 = 4.764 < 6.193] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)D393.CB) [> 3.772 = 6.287 < 8.173] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S341.CB, (T0547)D401.CB) [> 4.402 = 7.336 < 9.537] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)E314.CB) [> 4.433 = 7.388 < 9.604] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)L391.CB) [> 4.251 = 7.086 < 9.211] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)F227.CB) [> 3.450 = 5.750 < 7.475] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)E148.CB) [> 4.494 = 7.490 < 9.737] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)I317.CB) [> 4.155 = 6.925 < 9.003] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)H151.CB) [> 4.432 = 7.387 < 9.604] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)I388.CB) [> 4.112 = 6.854 < 8.910] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)K286.CB) [> 4.283 = 7.139 < 9.281] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)L155.CB) [> 4.220 = 7.034 < 9.144] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)P176.CB) [> 4.018 = 6.697 < 8.706] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)E314.CB) [> 3.665 = 6.108 < 7.941] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)A146.CB) [> 4.171 = 6.952 < 9.037] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)S287.CB) [> 3.443 = 5.739 < 7.461] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E164.CB, (T0547)E220.CB) [> 4.467 = 7.446 < 9.679] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)L54.CB) [> 4.591 = 7.652 < 9.948] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)H410.CB) [> 3.747 = 6.244 < 8.118] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)S372.CB) [> 4.353 = 7.255 < 9.432] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)L429.CB) [> 4.151 = 6.918 < 8.993] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)G199.CA) [> 3.217 = 5.362 < 6.970] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)D312.CB) [> 4.336 = 7.226 < 9.394] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)F392.CB) [> 4.507 = 7.512 < 9.765] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S387.CB, (T0547)A427.CB) [> 3.938 = 6.563 < 8.532] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)S445.CB) [> 4.543 = 7.572 < 9.844] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F340.CB, (T0547)L408.CB) [> 4.370 = 7.283 < 9.468] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S341.CB, (T0547)I407.CB) [> 4.300 = 7.167 < 9.317] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S341.CB, (T0547)L408.CB) [> 3.326 = 5.544 < 7.207] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)I412.CB) [> 3.029 = 5.049 < 6.563] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)T413.CB) [> 3.437 = 5.728 < 7.446] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)K414.CB) [> 2.954 = 4.924 < 6.401] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)T413.CB) [> 4.057 = 6.761 < 8.789] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E148.CB, (T0547)N179.CB) [> 4.417 = 7.362 < 9.571] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S341.CB, (T0547)E406.CB) [> 3.986 = 6.643 < 8.636] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S341.CB, (T0547)T409.CB) [> 4.616 = 7.694 < 10.002] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)E406.CB) [> 4.280 = 7.133 < 9.272] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L394.CB) [> 4.416 = 7.361 < 9.569] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)E115.CB) [> 4.608 = 7.681 < 9.985] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A263.CB) [> 3.779 = 6.298 < 8.187] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)Y396.CB) [> 4.104 = 6.840 < 8.891] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)L399.CB) [> 4.079 = 6.798 < 8.838] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)Q400.CB) [> 3.952 = 6.587 < 8.563] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)F318.CB) [> 4.037 = 6.729 < 8.748] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)R259.CB) [> 4.232 = 7.053 < 9.169] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)N265.CB) [> 4.514 = 7.523 < 9.780] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)L385.CB) [> 3.727 = 6.211 < 8.075] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)V397.CB) [> 4.627 = 7.712 < 10.026] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M149.CB, (T0547)N179.CB) [> 4.282 = 7.136 < 9.277] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)T409.CB) [> 3.295 = 5.491 < 7.138] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)I306.CB) [> 4.292 = 7.153 < 9.299] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)L399.CB) [> 4.502 = 7.504 < 9.755] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)L441.CB) [> 4.285 = 7.142 < 9.285] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)S372.CB) [> 2.962 = 4.936 < 6.417] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)P315.CB) [> 4.561 = 7.602 < 9.882] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)L419.CB) [> 4.171 = 6.951 < 9.037] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)A170.CB) [> 4.372 = 7.287 < 9.473] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E172.CB, (T0547)Q226.CB) [> 4.289 = 7.149 < 9.294] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)V325.CB) [> 4.246 = 7.076 < 9.199] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)L411.CB) [> 3.971 = 6.619 < 8.605] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)P243.CB) [> 4.384 = 7.306 < 9.498] w=0.106 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R137.CB, (T0547)E162.CB) [> 3.429 = 5.715 < 7.430] w=0.097 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)L271.CB) [> 4.292 = 7.153 < 9.299] w=0.097 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K175.CB, (T0547)L223.CB) [> 4.096 = 6.827 < 8.875] w=0.096 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)E294.CB) [> 2.451 = 4.084 < 5.310] w=0.096 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)T154.CB) [> 4.331 = 7.218 < 9.383] w=0.096 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R288.CB, (T0547)F318.CB) [> 3.361 = 5.602 < 7.282] w=0.094 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)D312.CB) [> 3.953 = 6.589 < 8.566] w=0.094 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)E308.CB) [> 4.331 = 7.218 < 9.384] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G192.CA) [> 2.713 = 4.521 < 5.878] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)A307.CB) [> 4.427 = 7.379 < 9.592] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)I169.CB) [> 3.890 = 6.483 < 8.428] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)G252.CA) [> 4.503 = 7.505 < 9.756] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)G544.CA) [> 2.990 = 4.983 < 6.478] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)Y545.CB) [> 3.869 = 6.449 < 8.383] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)G544.CA) [> 2.891 = 4.818 < 6.264] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)V547.CB) [> 3.316 = 5.527 < 7.185] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)F318.CB) [> 3.741 = 6.235 < 8.106] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)A251.CB) [> 3.154 = 5.256 < 6.833] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T207.CB, (T0547)L258.CB) [> 4.629 = 7.715 < 10.030] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)E294.CB) [> 4.044 = 6.739 < 8.761] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)D383.CB) [> 4.176 = 6.960 < 9.049] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)S403.CB) [> 4.055 = 6.759 < 8.786] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)E406.CB) [> 3.476 = 5.793 < 7.530] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)A405.CB) [> 3.124 = 5.206 < 6.768] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)N404.CB) [> 4.031 = 6.718 < 8.734] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)S403.CB) [> 3.640 = 6.067 < 7.887] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E343.CB, (T0547)E406.CB) [> 3.487 = 5.811 < 7.554] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E343.CB, (T0547)S403.CB) [> 4.294 = 7.157 < 9.304] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)S403.CB) [> 3.098 = 5.163 < 6.711] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)L408.CB) [> 4.614 = 7.690 < 9.997] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)I407.CB) [> 3.407 = 5.679 < 7.382] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E294.CB, (T0547)L313.CB) [> 3.288 = 5.480 < 7.124] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)P315.CB) [> 4.402 = 7.337 < 9.538] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)N141.CB) [> 4.344 = 7.240 < 9.411] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I140.CB) [> 4.403 = 7.338 < 9.539] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)Q437.CB) [> 4.327 = 7.211 < 9.374] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)V436.CB) [> 3.773 = 6.288 < 8.175] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)I432.CB) [> 3.481 = 5.802 < 7.543] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)I538.CB) [> 3.392 = 5.653 < 7.349] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)D434.CB) [> 3.338 = 5.564 < 7.233] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)I432.CB) [> 3.103 = 5.172 < 6.724] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)I538.CB) [> 3.877 = 6.462 < 8.401] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E37.CB, (T0547)L441.CB) [> 4.421 = 7.369 < 9.579] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K27.CB, (T0547)A374.CB) [> 2.368 = 3.947 < 5.131] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)L385.CB) [> 4.382 = 7.303 < 9.494] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)Q448.CB) [> 4.256 = 7.094 < 9.222] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)R293.CB) [> 4.313 = 7.188 < 9.344] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)F447.CB) [> 2.761 = 4.602 < 5.982] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)Q433.CB) [> 3.794 = 6.323 < 8.220] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)I537.CB) [> 3.907 = 6.511 < 8.464] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S387.CB, (T0547)D428.CB) [> 3.852 = 6.420 < 8.346] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)R402.CB) [> 3.007 = 5.012 < 6.515] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)D393.CB) [> 3.877 = 6.462 < 8.400] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)D393.CB) [> 4.110 = 6.849 < 8.904] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)K414.CB) [> 4.491 = 7.485 < 9.731] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)K423.CB) [> 4.550 = 7.583 < 9.858] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)S381.CB) [> 4.383 = 7.306 < 9.497] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)N347.CB) [> 4.707 = 7.845 < 10.199] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)A431.CB) [> 4.485 = 7.476 < 9.718] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)T291.CB) [> 4.401 = 7.334 < 9.535] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)T291.CB) [> 3.999 = 6.665 < 8.665] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)E542.CB) [> 4.129 = 6.881 < 8.945] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)L411.CB) [> 4.262 = 7.103 < 9.234] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)N253.CB) [> 4.519 = 7.532 < 9.792] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)E548.CB) [> 4.286 = 7.144 < 9.287] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)G78.CA) [> 3.361 = 5.601 < 7.282] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)N270.CB) [> 4.408 = 7.347 < 9.551] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)K264.CB) [> 4.364 = 7.273 < 9.455] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)F324.CB) [> 4.599 = 7.665 < 9.964] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)I388.CB) [> 3.546 = 5.910 < 7.683] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)Q588.CB) [> 4.083 = 6.805 < 8.846] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)D586.CB) [> 4.253 = 7.089 < 9.216] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)N585.CB) [> 3.694 = 6.157 < 8.004] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)L583.CB) [> 3.528 = 5.881 < 7.645] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)R402.CB) [> 3.938 = 6.564 < 8.533] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)L399.CB) [> 4.175 = 6.959 < 9.047] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)L420.CB) [> 4.414 = 7.357 < 9.564] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)S381.CB) [> 4.682 = 7.803 < 10.144] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)A296.CB) [> 4.478 = 7.463 < 9.702] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)L313.CB) [> 4.702 = 7.837 < 10.189] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)G150.CA) [> 3.885 = 6.475 < 8.418] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)D434.CB) [> 4.470 = 7.450 < 9.685] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)D434.CB) [> 4.300 = 7.167 < 9.317] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)F444.CB) [> 4.570 = 7.616 < 9.901] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)F392.CB) [> 3.804 = 6.340 < 8.242] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)F318.CB) [> 4.023 = 6.705 < 8.716] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)D393.CB) [> 3.388 = 5.647 < 7.341] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)D393.CB) [> 3.673 = 6.122 < 7.958] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)E148.CB) [> 4.499 = 7.498 < 9.747] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)L394.CB) [> 4.176 = 6.959 < 9.047] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)P315.CB) [> 4.054 = 6.757 < 8.784] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)P315.CB) [> 4.037 = 6.729 < 8.747] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F174.CB, (T0547)L223.CB) [> 3.499 = 5.832 < 7.582] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)I432.CB) [> 3.943 = 6.572 < 8.544] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)E548.CB) [> 3.777 = 6.294 < 8.183] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)L385.CB) [> 3.119 = 5.198 < 6.758] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)E314.CB) [> 3.201 = 5.335 < 6.935] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)L313.CB) [> 4.238 = 7.063 < 9.182] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)F144.CB) [> 4.292 = 7.153 < 9.300] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)L408.CB) [> 4.342 = 7.236 < 9.407] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)I319.CB) [> 3.704 = 6.174 < 8.026] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)I417.CB) [> 4.179 = 6.965 < 9.055] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)S287.CB) [> 3.458 = 5.764 < 7.493] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)Q433.CB) [> 3.501 = 5.835 < 7.586] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)D316.CB) [> 4.354 = 7.256 < 9.433] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)E314.CB) [> 4.000 = 6.667 < 8.667] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)R288.CB) [> 3.068 = 5.114 < 6.648] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)L275.CB) [> 4.534 = 7.556 < 9.823] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)G395.CA) [> 3.520 = 5.866 < 7.626] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)G78.CA) [> 4.514 = 7.523 < 9.780] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T256.CB, (T0547)K310.CB) [> 2.780 = 4.633 < 6.023] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)S372.CB) [> 3.738 = 6.231 < 8.100] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)I200.CB) [> 4.339 = 7.232 < 9.402] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)E285.CB) [> 4.428 = 7.380 < 9.594] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)E406.CB) [> 4.159 = 6.932 < 9.012] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)V277.CB) [> 4.062 = 6.770 < 8.801] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S387.CB, (T0547)P426.CB) [> 4.500 = 7.501 < 9.751] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)N425.CB) [> 4.635 = 7.725 < 10.042] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)M149.CB) [> 4.562 = 7.603 < 9.883] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)A416.CB) [> 3.457 = 5.761 < 7.489] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)L420.CB) [> 4.307 = 7.178 < 9.332] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)L292.CB) [> 3.498 = 5.830 < 7.579] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)L54.CB) [> 4.404 = 7.340 < 9.543] w=0.093 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)A268.CB) [> 4.641 = 7.736 < 10.056] w=0.084 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)Y255.CB) [> 4.482 = 7.469 < 9.710] w=0.082 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)F318.CB) [> 2.893 = 4.822 < 6.268] w=0.082 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)K311.CB) [> 4.213 = 7.021 < 9.128] w=0.081 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)F204.CB) [> 4.368 = 7.281 < 9.465] w=0.081 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)G111.CA) [> 4.719 = 7.865 < 10.224] w=0.081 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G199.CA, (T0547)G235.CA) [> 3.931 = 6.552 < 8.518] w=0.081 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)L375.CB) [> 4.316 = 7.193 < 9.350] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)G549.CA) [> 4.309 = 7.182 < 9.337] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)Y396.CB) [> 3.646 = 6.077 < 7.900] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)K177.CB) [> 3.916 = 6.527 < 8.486] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)G274.CA) [> 4.580 = 7.633 < 9.923] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)L394.CB) [> 3.806 = 6.343 < 8.246] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)D393.CB) [> 4.175 = 6.958 < 9.046] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)D398.CB) [> 2.887 = 4.812 < 6.256] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)L391.CB) [> 4.219 = 7.031 < 9.141] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)I153.CB) [> 4.411 = 7.352 < 9.557] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)Y255.CB) [> 3.089 = 5.149 < 6.694] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G252.CA) [> 3.866 = 6.444 < 8.377] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)I254.CB) [> 4.030 = 6.717 < 8.732] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)R259.CB) [> 4.481 = 7.468 < 9.708] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)H151.CB) [> 4.056 = 6.760 < 8.788] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)I254.CB) [> 4.516 = 7.527 < 9.785] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)K310.CB) [> 3.801 = 6.334 < 8.235] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)V397.CB) [> 3.484 = 5.807 < 7.549] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)G395.CA) [> 4.506 = 7.510 < 9.763] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)D401.CB) [> 4.290 = 7.150 < 9.295] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)D393.CB) [> 4.473 = 7.455 < 9.692] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)V397.CB) [> 4.097 = 6.828 < 8.877] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)D422.CB) [> 4.413 = 7.356 < 9.563] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K283.CB, (T0547)S368.CB) [> 4.007 = 6.679 < 8.682] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)Y366.CB) [> 3.462 = 5.770 < 7.501] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)K260.CB) [> 4.648 = 7.746 < 10.070] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)E240.CB) [> 4.006 = 6.677 < 8.680] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)E240.CB) [> 4.328 = 7.213 < 9.377] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I432.CB) [> 4.358 = 7.263 < 9.441] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)E435.CB) [> 4.569 = 7.615 < 9.899] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)N373.CB) [> 3.668 = 6.114 < 7.948] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K27.CB, (T0547)L375.CB) [> 4.050 = 6.749 < 8.774] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E12.CB, (T0547)L54.CB) [> 3.814 = 6.356 < 8.263] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)M149.CB) [> 4.558 = 7.596 < 9.875] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)R402.CB) [> 4.240 = 7.066 < 9.186] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)V191.CB) [> 4.426 = 7.377 < 9.590] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)T413.CB) [> 3.310 = 5.517 < 7.172] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)A307.CB) [> 4.436 = 7.393 < 9.610] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)A307.CB) [> 4.222 = 7.037 < 9.148] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E294.CB, (T0547)K310.CB) [> 3.125 = 5.209 < 6.771] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)A307.CB) [> 3.874 = 6.456 < 8.393] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)L313.CB) [> 3.600 = 6.000 < 7.800] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)K310.CB) [> 3.915 = 6.526 < 8.483] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)G544.CA) [> 4.551 = 7.584 < 9.859] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)E548.CB) [> 3.570 = 5.950 < 7.735] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)I230.CB) [> 4.558 = 7.597 < 9.876] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)L100.CB) [> 4.582 = 7.637 < 9.928] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)V325.CB) [> 4.513 = 7.522 < 9.778] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q424.CB, (T0547)F453.CB) [> 3.526 = 5.877 < 7.640] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T390.CB, (T0547)Q424.CB) [> 4.566 = 7.611 < 9.894] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)L206.CB) [> 4.725 = 7.875 < 10.238] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)G205.CA) [> 4.774 = 7.957 < 10.344] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E138.CB, (T0547)D168.CB) [> 4.694 = 7.824 < 10.171] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)A146.CB) [> 4.649 = 7.748 < 10.073] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)V299.CB) [> 4.646 = 7.744 < 10.067] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K76.CB, (T0547)V300.CB) [> 3.640 = 6.067 < 7.887] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E72.CB, (T0547)K304.CB) [> 4.254 = 7.090 < 9.217] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K68.CB, (T0547)V300.CB) [> 3.412 = 5.687 < 7.393] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L54.CB, (T0547)K414.CB) [> 4.687 = 7.812 < 10.155] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)E435.CB) [> 4.586 = 7.643 < 9.936] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)H329.CB) [> 4.736 = 7.893 < 10.261] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)E438.CB) [> 3.825 = 6.375 < 8.287] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)D434.CB) [> 3.757 = 6.262 < 8.140] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)P371.CB) [> 4.670 = 7.783 < 10.118] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)S539.CB) [> 4.265 = 7.108 < 9.240] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)L583.CB) [> 4.036 = 6.726 < 8.744] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S387.CB, (T0547)Q424.CB) [> 4.560 = 7.601 < 9.881] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N373.CB, (T0547)Q400.CB) [> 3.854 = 6.424 < 8.351] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)A427.CB) [> 4.551 = 7.585 < 9.860] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)H384.CB) [> 4.722 = 7.870 < 10.231] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)A327.CB) [> 4.752 = 7.920 < 10.296] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)R288.CB) [> 3.565 = 5.941 < 7.724] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)E285.CB) [> 4.064 = 6.773 < 8.805] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)K310.CB) [> 4.027 = 6.711 < 8.724] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N249.CB, (T0547)N305.CB) [> 4.635 = 7.725 < 10.042] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)F301.CB) [> 4.406 = 7.343 < 9.546] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E240.CB, (T0547)A276.CB) [> 4.655 = 7.758 < 10.085] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)K286.CB) [> 4.415 = 7.359 < 9.566] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)G235.CA) [> 3.485 = 5.808 < 7.550] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)G235.CA) [> 3.747 = 6.245 < 8.119] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)P243.CB) [> 3.196 = 5.327 < 6.925] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)L389.CB) [> 3.681 = 6.135 < 7.976] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)L389.CB) [> 3.505 = 5.842 < 7.594] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)G395.CA) [> 4.143 = 6.905 < 8.977] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)E285.CB) [> 3.624 = 6.040 < 7.852] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)F282.CB) [> 3.914 = 6.524 < 8.481] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)F318.CB) [> 4.133 = 6.889 < 8.955] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)S287.CB) [> 4.117 = 6.862 < 8.921] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)R288.CB) [> 3.817 = 6.362 < 8.270] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)R288.CB) [> 3.987 = 6.645 < 8.639] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)I388.CB) [> 3.710 = 6.183 < 8.038] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)H384.CB) [> 3.829 = 6.381 < 8.296] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)E386.CB) [> 3.985 = 6.641 < 8.634] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)K286.CB) [> 4.041 = 6.736 < 8.756] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)H384.CB) [> 3.864 = 6.440 < 8.372] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)N123.CB) [> 4.192 = 6.987 < 9.084] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)I317.CB) [> 4.370 = 7.284 < 9.469] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)L391.CB) [> 4.230 = 7.050 < 9.165] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)D393.CB) [> 3.465 = 5.776 < 7.509] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)D393.CB) [> 4.087 = 6.812 < 8.856] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)G395.CA) [> 3.341 = 5.568 < 7.239] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)G395.CA) [> 3.410 = 5.684 < 7.389] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K68.CB, (T0547)G78.CA) [> 4.236 = 7.061 < 9.179] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)I333.CB) [> 4.778 = 7.964 < 10.353] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)H410.CB) [> 3.979 = 6.631 < 8.620] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)Q309.CB) [> 3.585 = 5.975 < 7.767] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)K264.CB) [> 4.459 = 7.432 < 9.661] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)K311.CB) [> 4.024 = 6.706 < 8.718] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)L155.CB) [> 4.460 = 7.433 < 9.663] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)K102.CB) [> 4.653 = 7.755 < 10.081] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)E314.CB) [> 3.670 = 6.117 < 7.953] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)A326.CB) [> 4.615 = 7.692 < 9.999] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)E285.CB) [> 3.619 = 6.032 < 7.842] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)T390.CB) [> 3.215 = 5.358 < 6.965] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)L389.CB) [> 3.920 = 6.534 < 8.494] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)F392.CB) [> 4.049 = 6.748 < 8.772] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)T390.CB) [> 3.598 = 5.997 < 7.796] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)F227.CB) [> 4.255 = 7.091 < 9.219] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L155.CB) [> 4.482 = 7.471 < 9.712] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)P176.CB) [> 3.670 = 6.116 < 7.951] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)Y295.CB) [> 3.678 = 6.130 < 7.969] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)N270.CB) [> 4.694 = 7.824 < 10.171] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)K311.CB) [> 3.885 = 6.475 < 8.418] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)K203.CB) [> 3.450 = 5.750 < 7.474] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)Q433.CB) [> 4.012 = 6.687 < 8.693] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)L303.CB) [> 4.609 = 7.682 < 9.987] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N253.CB, (T0547)K310.CB) [> 4.348 = 7.247 < 9.421] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)I302.CB) [> 4.346 = 7.244 < 9.417] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)E240.CB) [> 3.729 = 6.215 < 8.079] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)I200.CB) [> 4.515 = 7.526 < 9.784] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)P128.CB) [> 4.543 = 7.572 < 9.843] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)G107.CA) [> 4.200 = 7.000 < 9.100] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)G101.CA) [> 4.520 = 7.533 < 9.793] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)G107.CA) [> 4.219 = 7.032 < 9.141] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)Y106.CB) [> 3.146 = 5.243 < 6.816] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)G101.CA) [> 3.099 = 5.166 < 6.715] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)L100.CB) [> 4.534 = 7.556 < 9.823] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)A330.CB) [> 4.622 = 7.703 < 10.014] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)V397.CB) [> 4.403 = 7.339 < 9.541] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)V397.CB) [> 4.315 = 7.191 < 9.349] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)K196.CB) [> 3.700 = 6.167 < 8.017] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)L441.CB) [> 3.526 = 5.877 < 7.640] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K27.CB, (T0547)H53.CB) [> 3.684 = 6.141 < 7.983] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K27.CB, (T0547)P52.CB) [> 4.352 = 7.254 < 9.430] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K27.CB, (T0547)F51.CB) [> 3.089 = 5.148 < 6.693] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)S372.CB) [> 2.763 = 4.605 < 5.987] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)N373.CB) [> 3.755 = 6.258 < 8.136] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)A374.CB) [> 3.228 = 5.380 < 6.994] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)H384.CB) [> 4.481 = 7.469 < 9.710] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)L258.CB) [> 4.226 = 7.044 < 9.157] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)G421.CA) [> 3.594 = 5.990 < 7.788] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)P371.CB) [> 4.075 = 6.792 < 8.830] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)K135.CB) [> 4.339 = 7.231 < 9.400] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)L223.CB) [> 4.028 = 6.713 < 8.726] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L223.CB) [> 3.498 = 5.829 < 7.578] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)L411.CB) [> 3.465 = 5.775 < 7.507] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)Y396.CB) [> 4.049 = 6.749 < 8.774] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)E172.CB) [> 4.104 = 6.840 < 8.892] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)T291.CB) [> 3.937 = 6.561 < 8.530] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)A307.CB) [> 4.785 = 7.974 < 10.367] w=0.080 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)I166.CB) [> 4.342 = 7.237 < 9.408] w=0.070 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)F232.CB) [> 4.607 = 7.678 < 9.981] w=0.069 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)E294.CB) [> 3.927 = 6.545 < 8.509] w=0.069 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)Y295.CB) [> 4.203 = 7.005 < 9.107] w=0.069 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N249.CB, (T0547)D298.CB) [> 4.227 = 7.045 < 9.159] w=0.069 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)E314.CB) [> 3.267 = 5.444 < 7.078] w=0.068 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)S202.CB) [> 3.497 = 5.829 < 7.578] w=0.068 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D168.CB, (T0547)L224.CB) [> 4.715 = 7.859 < 10.216] w=0.068 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)N80.CB) [> 3.720 = 6.200 < 8.060] w=0.068 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)Q448.CB) [> 3.765 = 6.276 < 8.158] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)S449.CB) [> 3.039 = 5.065 < 6.584] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)Q448.CB) [> 3.757 = 6.262 < 8.140] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S445.CB, (T0547)I537.CB) [> 3.386 = 5.644 < 7.337] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S445.CB, (T0547)I538.CB) [> 4.005 = 6.676 < 8.678] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S445.CB, (T0547)S539.CB) [> 2.921 = 4.868 < 6.328] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)A536.CB) [> 2.686 = 4.476 < 5.819] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S449.CB, (T0547)A536.CB) [> 3.734 = 6.224 < 8.091] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K102.CB, (T0547)A127.CB) [> 4.025 = 6.708 < 8.721] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)T291.CB) [> 4.200 = 7.000 < 9.100] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)S445.CB) [> 4.301 = 7.168 < 9.319] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)L206.CB) [> 3.381 = 5.635 < 7.325] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)F144.CB) [> 4.013 = 6.689 < 8.695] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)I382.CB) [> 4.096 = 6.827 < 8.875] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)E376.CB) [> 4.041 = 6.736 < 8.756] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E386.CB, (T0547)V397.CB) [> 3.701 = 6.168 < 8.019] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)K543.CB) [> 3.443 = 5.737 < 7.459] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)K543.CB) [> 3.793 = 6.322 < 8.218] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)K543.CB) [> 3.991 = 6.651 < 8.646] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)V547.CB) [> 3.794 = 6.324 < 8.221] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)T154.CB) [> 4.575 = 7.625 < 9.913] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)A374.CB) [> 3.612 = 6.020 < 7.826] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)I319.CB) [> 3.559 = 5.931 < 7.711] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)F232.CB) [> 3.952 = 6.586 < 8.562] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)D393.CB) [> 4.486 = 7.476 < 9.719] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)P315.CB) [> 4.310 = 7.184 < 9.339] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L337.CB) [> 4.284 = 7.141 < 9.283] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V397.CB, (T0547)L408.CB) [> 4.456 = 7.427 < 9.655] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)D398.CB) [> 4.696 = 7.827 < 10.175] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)D398.CB) [> 3.489 = 5.815 < 7.559] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)D316.CB) [> 4.280 = 7.134 < 9.274] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)K264.CB) [> 3.705 = 6.175 < 8.027] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)N88.CB) [> 4.462 = 7.437 < 9.668] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)L313.CB) [> 3.991 = 6.651 < 8.647] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)K310.CB) [> 4.601 = 7.669 < 9.969] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)K310.CB) [> 3.884 = 6.473 < 8.415] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)K311.CB) [> 4.165 = 6.941 < 9.024] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)G322.CA) [> 4.356 = 7.261 < 9.439] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)S321.CB) [> 3.998 = 6.663 < 8.662] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)Q237.CB) [> 3.604 = 6.007 < 7.810] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)I238.CB) [> 3.618 = 6.029 < 7.838] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)I540.CB) [> 4.677 = 7.795 < 10.133] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)Y545.CB) [> 3.569 = 5.949 < 7.734] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)V436.CB) [> 3.391 = 5.652 < 7.348] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)I540.CB) [> 2.296 = 3.827 < 4.975] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)E435.CB) [> 3.165 = 5.276 < 6.859] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)T409.CB) [> 3.825 = 6.376 < 8.288] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K28.CB, (T0547)A374.CB) [> 3.775 = 6.292 < 8.180] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K27.CB, (T0547)E435.CB) [> 2.349 = 3.915 < 5.089] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)E435.CB) [> 3.217 = 5.362 < 6.971] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)N373.CB) [> 4.498 = 7.496 < 9.745] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)K370.CB) [> 4.191 = 6.986 < 9.082] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)S372.CB) [> 4.079 = 6.798 < 8.838] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)A30.CB) [> 3.195 = 5.325 < 6.922] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)H410.CB) [> 4.377 = 7.295 < 9.483] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)I540.CB) [> 2.409 = 4.014 < 5.218] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)I540.CB) [> 4.578 = 7.630 < 9.919] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)A146.CB) [> 4.181 = 6.969 < 9.060] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)G272.CA) [> 4.443 = 7.405 < 9.626] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)I306.CB) [> 4.543 = 7.571 < 9.843] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)Y295.CB) [> 3.222 = 5.370 < 6.981] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)G192.CA) [> 4.136 = 6.893 < 8.962] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)I537.CB) [> 3.232 = 5.386 < 7.002] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)M261.CB) [> 3.360 = 5.600 < 7.280] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A251.CB) [> 4.638 = 7.730 < 10.048] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)A251.CB) [> 4.330 = 7.216 < 9.381] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)V584.CB) [> 4.348 = 7.247 < 9.421] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)S403.CB) [> 4.652 = 7.753 < 10.078] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)V397.CB) [> 4.064 = 6.773 < 8.805] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)K367.CB) [> 4.527 = 7.544 < 9.808] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)G395.CA) [> 3.915 = 6.525 < 8.483] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)S368.CB) [> 4.152 = 6.921 < 8.997] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)T239.CB) [> 3.898 = 6.496 < 8.445] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K27.CB, (T0547)N373.CB) [> 3.792 = 6.320 < 8.216] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)F204.CB) [> 4.626 = 7.710 < 10.023] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)A165.CB) [> 4.636 = 7.726 < 10.044] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)E548.CB) [> 4.567 = 7.612 < 9.896] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N216.CB, (T0547)K264.CB) [> 4.201 = 7.001 < 9.101] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)A251.CB) [> 4.663 = 7.771 < 10.102] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)N221.CB) [> 4.220 = 7.033 < 9.143] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)N221.CB) [> 4.473 = 7.454 < 9.690] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)N216.CB) [> 4.417 = 7.362 < 9.570] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)L217.CB) [> 4.016 = 6.693 < 8.701] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)E213.CB) [> 4.362 = 7.271 < 9.452] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)I540.CB) [> 4.416 = 7.360 < 9.568] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)L389.CB) [> 4.325 = 7.208 < 9.371] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)K543.CB) [> 3.804 = 6.340 < 8.242] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)A263.CB) [> 4.028 = 6.714 < 8.728] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I359.CB) [> 4.586 = 7.643 < 9.936] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)R288.CB) [> 4.138 = 6.897 < 8.966] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)S445.CB) [> 4.516 = 7.527 < 9.785] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)L399.CB) [> 3.957 = 6.595 < 8.573] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N373.CB, (T0547)L408.CB) [> 3.953 = 6.588 < 8.564] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)D383.CB) [> 4.631 = 7.719 < 10.035] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E285.CB, (T0547)E294.CB) [> 3.473 = 5.789 < 7.525] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T256.CB, (T0547)N305.CB) [> 4.715 = 7.858 < 10.215] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)Q309.CB) [> 3.953 = 6.588 < 8.565] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)N305.CB) [> 3.990 = 6.651 < 8.646] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)G272.CA) [> 4.529 = 7.548 < 9.813] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N249.CB, (T0547)Q309.CB) [> 3.714 = 6.190 < 8.048] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)K264.CB) [> 4.346 = 7.243 < 9.415] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)L234.CB) [> 3.711 = 6.185 < 8.040] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)L234.CB) [> 3.929 = 6.548 < 8.512] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)N270.CB) [> 4.402 = 7.337 < 9.538] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)S539.CB) [> 4.516 = 7.526 < 9.784] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)E435.CB) [> 4.528 = 7.547 < 9.812] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)E435.CB) [> 4.316 = 7.193 < 9.350] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)V300.CB) [> 4.503 = 7.505 < 9.757] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K76.CB, (T0547)I317.CB) [> 4.502 = 7.503 < 9.754] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G74.CA, (T0547)E314.CB) [> 4.760 = 7.933 < 10.313] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F73.CB, (T0547)E314.CB) [> 2.398 = 3.996 < 5.195] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)L441.CB) [> 4.001 = 6.668 < 8.669] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)V436.CB) [> 3.320 = 5.534 < 7.194] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)S287.CB) [> 3.853 = 6.421 < 8.347] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)E386.CB) [> 3.384 = 5.641 < 7.333] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)Q433.CB) [> 4.221 = 7.036 < 9.146] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)R288.CB) [> 3.384 = 5.641 < 7.333] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)I432.CB) [> 3.430 = 5.716 < 7.431] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)Q437.CB) [> 2.770 = 4.617 < 6.002] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)V436.CB) [> 2.723 = 4.539 < 5.900] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)E435.CB) [> 2.320 = 3.867 < 5.027] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)Q437.CB) [> 3.064 = 5.107 < 6.640] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)R439.CB) [> 4.197 = 6.995 < 9.094] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)Q437.CB) [> 3.913 = 6.522 < 8.479] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)V436.CB) [> 3.892 = 6.487 < 8.433] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)V436.CB) [> 3.518 = 5.864 < 7.623] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)I388.CB) [> 2.956 = 4.927 < 6.405] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)S387.CB) [> 3.264 = 5.440 < 7.071] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K102.CB, (T0547)V325.CB) [> 4.751 = 7.918 < 10.293] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G549.CA, (T0547)T559.CB) [> 4.467 = 7.445 < 9.678] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)D393.CB) [> 3.754 = 6.257 < 8.134] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)L394.CB) [> 4.200 = 7.001 < 9.101] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)L399.CB) [> 4.336 = 7.227 < 9.395] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)K310.CB) [> 3.753 = 6.254 < 8.131] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)E285.CB) [> 3.547 = 5.912 < 7.685] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)S287.CB) [> 3.651 = 6.086 < 7.912] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)K286.CB) [> 2.997 = 4.995 < 6.494] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)N161.CB) [> 4.068 = 6.781 < 8.815] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L54.CB, (T0547)A326.CB) [> 4.643 = 7.738 < 10.059] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)K310.CB) [> 3.954 = 6.589 < 8.566] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)Q309.CB) [> 3.490 = 5.817 < 7.562] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)K283.CB) [> 4.157 = 6.929 < 9.008] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)F282.CB) [> 3.161 = 5.269 < 6.850] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)V397.CB) [> 4.322 = 7.203 < 9.364] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)L275.CB) [> 4.770 = 7.950 < 10.335] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)T390.CB) [> 4.135 = 6.892 < 8.960] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)F392.CB) [> 2.971 = 4.952 < 6.437] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)L391.CB) [> 4.279 = 7.132 < 9.271] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)F392.CB) [> 4.245 = 7.075 < 9.197] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)L391.CB) [> 3.307 = 5.512 < 7.166] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)L394.CB) [> 4.354 = 7.256 < 9.433] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L389.CB) [> 4.424 = 7.373 < 9.585] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)I388.CB) [> 4.346 = 7.243 < 9.416] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)K415.CB) [> 4.166 = 6.943 < 9.025] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)Y396.CB) [> 4.577 = 7.629 < 9.917] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)A374.CB) [> 3.774 = 6.290 < 8.177] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K27.CB, (T0547)E438.CB) [> 3.908 = 6.514 < 8.468] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)F447.CB) [> 4.564 = 7.607 < 9.889] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)K367.CB) [> 4.375 = 7.291 < 9.479] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)T154.CB) [> 4.512 = 7.520 < 9.776] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)L420.CB) [> 3.751 = 6.252 < 8.127] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)F392.CB) [> 3.177 = 5.295 < 6.884] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)K414.CB) [> 3.677 = 6.128 < 7.967] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)I417.CB) [> 2.880 = 4.800 < 6.240] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)P371.CB) [> 4.193 = 6.989 < 9.086] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)P371.CB) [> 4.444 = 7.407 < 9.629] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)S372.CB) [> 4.360 = 7.267 < 9.447] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)G150.CA) [> 4.444 = 7.407 < 9.629] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G150.CA, (T0547)A170.CB) [> 4.460 = 7.433 < 9.663] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K171.CB, (T0547)E225.CB) [> 4.371 = 7.285 < 9.470] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E172.CB, (T0547)E225.CB) [> 4.174 = 6.958 < 9.045] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)I369.CB) [> 4.312 = 7.186 < 9.342] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)I369.CB) [> 2.824 = 4.706 < 6.118] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)T413.CB) [> 4.666 = 7.777 < 10.111] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)I417.CB) [> 3.812 = 6.354 < 8.260] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)A416.CB) [> 4.190 = 6.984 < 9.079] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)A326.CB) [> 3.838 = 6.397 < 8.317] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)G322.CA) [> 4.407 = 7.345 < 9.549] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)R50.CB) [> 4.755 = 7.924 < 10.302] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)H53.CB) [> 4.572 = 7.619 < 9.905] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)V331.CB) [> 4.449 = 7.414 < 9.639] w=0.066 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)A247.CB) [> 3.527 = 5.879 < 7.643] w=0.057 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)Y295.CB) [> 3.965 = 6.609 < 8.591] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E148.CB, (T0547)K175.CB) [> 4.585 = 7.642 < 9.934] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)E162.CB) [> 4.414 = 7.357 < 9.565] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)E162.CB) [> 4.431 = 7.385 < 9.600] w=0.054 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)E314.CB) [> 4.638 = 7.730 < 10.050] w=0.054 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)T291.CB) [> 3.561 = 5.935 < 7.715] w=0.054 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K175.CB, (T0547)L224.CB) [> 4.422 = 7.371 < 9.582] w=0.054 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)A146.CB) [> 3.794 = 6.323 < 8.220] w=0.054 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)K311.CB) [> 4.525 = 7.542 < 9.805] w=0.054 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)I200.CB) [> 4.638 = 7.730 < 10.049] w=0.054 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)Y255.CB) [> 4.403 = 7.338 < 9.539] w=0.054 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)A170.CB) [> 4.028 = 6.713 < 8.727] w=0.054 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F174.CB, (T0547)L224.CB) [> 3.247 = 5.412 < 7.036] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)K310.CB) [> 3.884 = 6.473 < 8.415] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)E250.CB) [> 4.502 = 7.503 < 9.754] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)G322.CA) [> 4.213 = 7.022 < 9.128] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)V397.CB) [> 3.184 = 5.307 < 6.899] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)K175.CB) [> 3.527 = 5.878 < 7.641] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)K175.CB) [> 3.526 = 5.877 < 7.640] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)K175.CB) [> 3.505 = 5.842 < 7.594] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)I388.CB) [> 3.832 = 6.387 < 8.303] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)E435.CB) [> 4.278 = 7.131 < 9.270] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)F318.CB) [> 4.623 = 7.705 < 10.016] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E125.CB, (T0547)E148.CB) [> 4.578 = 7.629 < 9.918] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)H410.CB) [> 4.730 = 7.883 < 10.248] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)L258.CB) [> 4.564 = 7.607 < 9.888] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S387.CB, (T0547)Y396.CB) [> 4.140 = 6.899 < 8.969] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F340.CB, (T0547)L411.CB) [> 4.630 = 7.717 < 10.033] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)G395.CA) [> 3.386 = 5.643 < 7.336] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)N179.CB) [> 4.573 = 7.621 < 9.907] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)E406.CB) [> 4.039 = 6.732 < 8.751] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)F174.CB) [> 3.229 = 5.382 < 6.997] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)G262.CA) [> 4.090 = 6.816 < 8.861] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)A251.CB) [> 3.496 = 5.826 < 7.574] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)A127.CB) [> 4.394 = 7.323 < 9.519] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)S445.CB) [> 4.048 = 6.746 < 8.770] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)F444.CB) [> 3.952 = 6.587 < 8.563] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q424.CB, (T0547)L563.CB) [> 3.484 = 5.806 < 7.548] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q424.CB, (T0547)D562.CB) [> 4.119 = 6.865 < 8.925] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)Q448.CB) [> 3.270 = 5.450 < 7.084] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)A307.CB) [> 3.301 = 5.501 < 7.152] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)A307.CB) [> 3.911 = 6.518 < 8.474] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)T559.CB) [> 4.221 = 7.034 < 9.145] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)K283.CB) [> 3.790 = 6.316 < 8.211] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)D401.CB) [> 4.348 = 7.247 < 9.421] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)K286.CB) [> 4.026 = 6.709 < 8.722] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)A268.CB) [> 4.007 = 6.679 < 8.682] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)V397.CB) [> 3.726 = 6.210 < 8.073] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)H384.CB) [> 3.876 = 6.459 < 8.397] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)L313.CB) [> 4.073 = 6.788 < 8.824] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)L313.CB) [> 3.915 = 6.525 < 8.482] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)I432.CB) [> 3.331 = 5.552 < 7.217] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)V547.CB) [> 4.567 = 7.612 < 9.895] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)F282.CB) [> 4.679 = 7.798 < 10.137] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)L385.CB) [> 3.568 = 5.947 < 7.732] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)D383.CB) [> 3.874 = 6.457 < 8.394] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)Q424.CB) [> 3.600 = 6.000 < 7.800] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)S387.CB) [> 4.289 = 7.148 < 9.293] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)Y396.CB) [> 3.447 = 5.746 < 7.469] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)Y396.CB) [> 4.450 = 7.417 < 9.642] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)E546.CB) [> 4.431 = 7.385 < 9.601] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)T559.CB) [> 4.098 = 6.831 < 8.880] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)Y545.CB) [> 4.501 = 7.502 < 9.752] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)I382.CB) [> 3.513 = 5.855 < 7.611] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)S381.CB) [> 3.762 = 6.271 < 8.152] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)K203.CB) [> 4.251 = 7.085 < 9.210] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)K423.CB) [> 2.964 = 4.939 < 6.421] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)K423.CB) [> 3.962 = 6.603 < 8.584] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)F204.CB) [> 3.876 = 6.460 < 8.398] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)A147.CB) [> 4.554 = 7.590 < 9.868] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)I306.CB) [> 2.848 = 4.746 < 6.170] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E294.CB, (T0547)A307.CB) [> 2.716 = 4.526 < 5.884] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E294.CB, (T0547)I306.CB) [> 3.998 = 6.663 < 8.661] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R293.CB, (T0547)I306.CB) [> 3.458 = 5.763 < 7.492] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)T559.CB) [> 3.670 = 6.117 < 7.952] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)N425.CB) [> 3.601 = 6.002 < 7.803] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)N425.CB) [> 3.205 = 5.342 < 6.944] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)K260.CB) [> 4.185 = 6.976 < 9.069] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)T228.CB) [> 4.473 = 7.455 < 9.691] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)R293.CB) [> 2.289 = 3.815 < 4.959] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)S321.CB) [> 4.736 = 7.894 < 10.262] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)E314.CB) [> 3.420 = 5.700 < 7.410] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)K311.CB) [> 4.295 = 7.158 < 9.305] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T209.CB, (T0547)E257.CB) [> 4.272 = 7.119 < 9.255] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)V547.CB) [> 3.891 = 6.485 < 8.430] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I551.CB) [> 4.561 = 7.602 < 9.883] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)A553.CB) [> 4.056 = 6.760 < 8.788] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)L446.CB) [> 2.585 = 4.308 < 5.600] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)S445.CB) [> 3.381 = 5.635 < 7.325] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)N132.CB) [> 4.362 = 7.270 < 9.452] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S449.CB, (T0547)E535.CB) [> 2.760 = 4.601 < 5.981] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)V547.CB) [> 4.375 = 7.291 < 9.478] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)Q448.CB) [> 3.349 = 5.582 < 7.257] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)V397.CB) [> 4.170 = 6.951 < 9.036] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)G395.CA) [> 3.739 = 6.232 < 8.102] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)V397.CB) [> 3.922 = 6.536 < 8.497] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)Y396.CB) [> 4.152 = 6.921 < 8.997] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)N253.CB) [> 4.757 = 7.928 < 10.307] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D168.CB, (T0547)N221.CB) [> 4.144 = 6.907 < 8.979] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)F318.CB) [> 4.710 = 7.851 < 10.206] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)A170.CB) [> 4.623 = 7.704 < 10.016] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G150.CA, (T0547)T228.CB) [> 4.322 = 7.203 < 9.364] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)V300.CB) [> 4.321 = 7.201 < 9.362] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)A296.CB) [> 3.677 = 6.129 < 7.968] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)I317.CB) [> 3.947 = 6.579 < 8.553] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)D316.CB) [> 2.860 = 4.767 < 6.197] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)P315.CB) [> 3.815 = 6.358 < 8.265] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)K76.CB) [> 3.108 = 5.180 < 6.734] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)K286.CB) [> 3.211 = 5.352 < 6.958] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)A536.CB) [> 4.353 = 7.255 < 9.431] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)I407.CB) [> 4.616 = 7.693 < 10.001] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)A536.CB) [> 3.205 = 5.342 < 6.945] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)G544.CA) [> 4.611 = 7.685 < 9.990] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)V436.CB) [> 4.576 = 7.627 < 9.915] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)Q437.CB) [> 3.929 = 6.548 < 8.512] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)V436.CB) [> 2.307 = 3.845 < 4.999] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)H410.CB) [> 3.745 = 6.241 < 8.113] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)N373.CB) [> 4.425 = 7.375 < 9.588] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)A374.CB) [> 3.874 = 6.457 < 8.394] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)L54.CB) [> 2.943 = 4.904 < 6.376] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)L583.CB) [> 2.693 = 4.488 < 5.834] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)K582.CB) [> 3.816 = 6.359 < 8.267] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N373.CB, (T0547)R402.CB) [> 4.124 = 6.873 < 8.934] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)Q400.CB) [> 4.506 = 7.509 < 9.762] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)A416.CB) [> 4.245 = 7.075 < 9.197] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)S387.CB) [> 4.647 = 7.744 < 10.068] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)F392.CB) [> 4.614 = 7.690 < 9.997] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)D383.CB) [> 4.630 = 7.717 < 10.031] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K286.CB, (T0547)F324.CB) [> 4.180 = 6.967 < 9.057] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N284.CB, (T0547)Y295.CB) [> 3.274 = 5.457 < 7.095] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)N284.CB) [> 3.838 = 6.396 < 8.315] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)R323.CB) [> 4.766 = 7.944 < 10.327] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)K310.CB) [> 4.390 = 7.316 < 9.511] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)E314.CB) [> 4.205 = 7.009 < 9.111] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)K311.CB) [> 4.200 = 7.000 < 9.100] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T256.CB, (T0547)Q309.CB) [> 3.061 = 5.101 < 6.631] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)N284.CB) [> 4.263 = 7.105 < 9.237] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)T291.CB) [> 4.569 = 7.615 < 9.900] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)R288.CB) [> 4.387 = 7.311 < 9.505] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)H233.CB) [> 4.255 = 7.091 < 9.218] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)H233.CB) [> 3.581 = 5.968 < 7.759] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)S236.CB) [> 3.983 = 6.638 < 8.630] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)P243.CB) [> 3.901 = 6.501 < 8.451] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)T559.CB) [> 3.861 = 6.435 < 8.366] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F174.CB, (T0547)K222.CB) [> 4.053 = 6.754 < 8.781] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)S445.CB) [> 4.151 = 6.918 < 8.993] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)D428.CB) [> 2.935 = 4.892 < 6.360] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)L419.CB) [> 4.013 = 6.688 < 8.695] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L419.CB) [> 4.356 = 7.259 < 9.437] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)E314.CB) [> 4.130 = 6.883 < 8.948] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)I153.CB) [> 4.531 = 7.552 < 9.818] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N373.CB, (T0547)I382.CB) [> 3.257 = 5.429 < 7.057] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L418.CB) [> 4.143 = 6.906 < 8.977] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)I432.CB) [> 3.169 = 5.282 < 6.867] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)D434.CB) [> 3.472 = 5.786 < 7.522] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)K311.CB) [> 3.565 = 5.941 < 7.723] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K286.CB, (T0547)I319.CB) [> 3.417 = 5.696 < 7.404] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)S287.CB) [> 2.681 = 4.468 < 5.808] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)K286.CB) [> 3.358 = 5.597 < 7.277] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)V436.CB) [> 4.435 = 7.391 < 9.608] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K286.CB, (T0547)F318.CB) [> 4.183 = 6.971 < 9.063] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)L244.CB) [> 4.154 = 6.923 < 9.000] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)A307.CB) [> 4.193 = 6.989 < 9.085] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)R323.CB) [> 4.634 = 7.723 < 10.040] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)L391.CB) [> 4.546 = 7.576 < 9.849] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)L391.CB) [> 3.557 = 5.928 < 7.706] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)F392.CB) [> 3.664 = 6.106 < 7.938] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)V397.CB) [> 4.268 = 7.114 < 9.248] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)F392.CB) [> 4.402 = 7.337 < 9.538] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)E285.CB) [> 4.357 = 7.261 < 9.440] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L313.CB) [> 3.994 = 6.657 < 8.654] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)V397.CB) [> 4.161 = 6.935 < 9.015] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)L266.CB) [> 4.682 = 7.804 < 10.145] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G101.CA, (T0547)E125.CB) [> 4.278 = 7.131 < 9.270] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)I551.CB) [> 3.245 = 5.408 < 7.031] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L218.CB) [> 4.279 = 7.132 < 9.272] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)E278.CB) [> 4.239 = 7.065 < 9.185] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)E548.CB) [> 3.487 = 5.811 < 7.555] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L419.CB) [> 4.217 = 7.028 < 9.137] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L420.CB) [> 4.306 = 7.176 < 9.329] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)A146.CB) [> 3.146 = 5.243 < 6.816] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E125.CB, (T0547)H151.CB) [> 3.372 = 5.619 < 7.305] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E125.CB, (T0547)N152.CB) [> 3.806 = 6.344 < 8.247] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)S236.CB) [> 3.319 = 5.531 < 7.190] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)L418.CB) [> 3.486 = 5.810 < 7.554] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)E314.CB) [> 3.976 = 6.627 < 8.615] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)G101.CA) [> 3.832 = 6.386 < 8.302] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)E285.CB) [> 4.726 = 7.877 < 10.240] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E285.CB, (T0547)F324.CB) [> 4.611 = 7.685 < 9.991] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)D398.CB) [> 4.555 = 7.591 < 9.869] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)I382.CB) [> 4.719 = 7.865 < 10.225] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N373.CB, (T0547)A405.CB) [> 4.720 = 7.866 < 10.226] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)A247.CB) [> 4.590 = 7.650 < 9.945] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)S381.CB) [> 4.249 = 7.082 < 9.206] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N141.CB, (T0547)E162.CB) [> 4.475 = 7.458 < 9.695] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)L244.CB) [> 4.082 = 6.803 < 8.844] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)P243.CB) [> 2.170 = 3.617 < 4.703] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)H242.CB) [> 3.873 = 6.455 < 8.392] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)Y440.CB) [> 4.617 = 7.696 < 10.005] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)R439.CB) [> 3.721 = 6.202 < 8.062] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K28.CB, (T0547)R439.CB) [> 2.577 = 4.295 < 5.583] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K28.CB, (T0547)E438.CB) [> 4.084 = 6.806 < 8.848] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K27.CB, (T0547)R439.CB) [> 4.094 = 6.823 < 8.870] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K27.CB, (T0547)V436.CB) [> 3.547 = 5.912 < 7.686] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)D586.CB) [> 4.247 = 7.079 < 9.203] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)H410.CB) [> 4.312 = 7.186 < 9.342] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)D401.CB) [> 4.600 = 7.666 < 9.966] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)S403.CB) [> 4.179 = 6.965 < 9.055] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)R402.CB) [> 4.132 = 6.887 < 8.953] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)D428.CB) [> 4.708 = 7.847 < 10.202] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)L378.CB) [> 4.171 = 6.952 < 9.038] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)H242.CB) [> 4.613 = 7.689 < 9.996] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)F144.CB) [> 4.775 = 7.959 < 10.347] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)L583.CB) [> 4.619 = 7.699 < 10.008] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)Y545.CB) [> 4.551 = 7.585 < 9.860] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K27.CB, (T0547)Q437.CB) [> 3.682 = 6.137 < 7.978] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)I32.CB) [> 4.028 = 6.713 < 8.726] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)N373.CB) [> 4.254 = 7.091 < 9.218] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N11.CB, (T0547)N328.CB) [> 4.051 = 6.752 < 8.778] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N11.CB, (T0547)L54.CB) [> 3.547 = 5.911 < 7.684] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)N328.CB) [> 3.090 = 5.150 < 6.695] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)I432.CB) [> 4.473 = 7.455 < 9.692] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)K415.CB) [> 4.616 = 7.694 < 10.002] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)G395.CA) [> 3.388 = 5.647 < 7.341] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)E386.CB) [> 3.916 = 6.527 < 8.485] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)E386.CB) [> 4.116 = 6.860 < 8.918] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)D383.CB) [> 3.971 = 6.619 < 8.604] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)A327.CB) [> 2.817 = 4.695 < 6.104] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)A170.CB) [> 4.372 = 7.286 < 9.472] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L358.CB) [> 4.254 = 7.090 < 9.217] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)L418.CB) [> 3.544 = 5.906 < 7.678] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)T413.CB) [> 4.043 = 6.739 < 8.760] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)L418.CB) [> 3.031 = 5.051 < 6.567] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)K370.CB) [> 4.386 = 7.310 < 9.504] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)A416.CB) [> 3.120 = 5.199 < 6.759] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)G395.CA) [> 3.561 = 5.935 < 7.715] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)I417.CB) [> 4.281 = 7.135 < 9.275] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)I417.CB) [> 4.486 = 7.477 < 9.720] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)G395.CA) [> 4.293 = 7.156 < 9.303] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)I412.CB) [> 3.569 = 5.948 < 7.732] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)D393.CB) [> 4.307 = 7.178 < 9.332] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)I478.CB) [> 4.555 = 7.592 < 9.869] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)I478.CB) [> 3.132 = 5.220 < 6.786] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)E250.CB) [> 4.605 = 7.676 < 9.978] w=0.053 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)T291.CB) [> 2.880 = 4.800 < 6.240] w=0.042 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I200.CB, (T0547)S236.CB) [> 3.851 = 6.418 < 8.343] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)K311.CB) [> 4.098 = 6.831 < 8.880] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)T390.CB) [> 4.267 = 7.112 < 9.245] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)L394.CB) [> 4.328 = 7.213 < 9.377] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D383.CB, (T0547)D393.CB) [> 3.644 = 6.074 < 7.896] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)Y440.CB) [> 3.652 = 6.086 < 7.912] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)E314.CB) [> 3.753 = 6.255 < 8.132] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G64.CA, (T0547)A81.CB) [> 4.476 = 7.460 < 9.697] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)N123.CB) [> 4.425 = 7.376 < 9.588] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)A263.CB) [> 4.229 = 7.048 < 9.162] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N221.CB, (T0547)A263.CB) [> 4.488 = 7.479 < 9.723] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)A263.CB) [> 3.939 = 6.565 < 8.534] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)D401.CB) [> 3.663 = 6.105 < 7.937] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)K99.CB) [> 4.531 = 7.552 < 9.817] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)L100.CB) [> 3.804 = 6.340 < 8.242] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)G101.CA) [> 3.841 = 6.402 < 8.323] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)S387.CB) [> 4.227 = 7.046 < 9.159] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)K286.CB) [> 3.792 = 6.320 < 8.216] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)I432.CB) [> 4.606 = 7.677 < 9.980] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)G549.CA) [> 3.286 = 5.477 < 7.120] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)G549.CA) [> 3.660 = 6.100 < 7.930] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)V547.CB) [> 2.900 = 4.834 < 6.284] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)Y279.CB) [> 3.232 = 5.387 < 7.003] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)T413.CB) [> 4.559 = 7.598 < 9.877] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)V547.CB) [> 3.235 = 5.391 < 7.008] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R288.CB, (T0547)L313.CB) [> 2.968 = 4.947 < 6.431] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)Y377.CB) [> 4.657 = 7.761 < 10.090] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)Y377.CB) [> 4.357 = 7.262 < 9.440] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)I319.CB) [> 4.332 = 7.220 < 9.387] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)F204.CB) [> 3.825 = 6.374 < 8.286] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R288.CB, (T0547)P315.CB) [> 4.092 = 6.819 < 8.865] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)A536.CB) [> 2.932 = 4.887 < 6.354] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)I538.CB) [> 4.169 = 6.948 < 9.033] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)E535.CB) [> 3.580 = 5.967 < 7.757] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)K352.CB) [> 3.512 = 5.853 < 7.609] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)N179.CB) [> 4.535 = 7.558 < 9.825] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)A536.CB) [> 4.193 = 6.989 < 9.085] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)L313.CB) [> 4.305 = 7.175 < 9.327] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L418.CB) [> 3.870 = 6.449 < 8.384] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q400.CB, (T0547)L446.CB) [> 3.122 = 5.203 < 6.764] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q400.CB, (T0547)F447.CB) [> 3.292 = 5.486 < 7.132] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)Q448.CB) [> 3.243 = 5.406 < 7.027] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)S449.CB) [> 4.494 = 7.489 < 9.736] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)Q448.CB) [> 3.695 = 6.158 < 8.005] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)F447.CB) [> 4.375 = 7.292 < 9.480] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)L563.CB) [> 2.538 = 4.230 < 5.500] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q424.CB, (T0547)F444.CB) [> 3.965 = 6.608 < 8.590] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q424.CB, (T0547)T559.CB) [> 3.910 = 6.517 < 8.473] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)I317.CB) [> 3.935 = 6.559 < 8.526] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D298.CB, (T0547)Q309.CB) [> 4.196 = 6.994 < 9.092] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)Q424.CB) [> 3.262 = 5.436 < 7.067] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)A374.CB) [> 3.851 = 6.418 < 8.344] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)A431.CB) [> 4.283 = 7.138 < 9.280] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)L139.CB) [> 4.470 = 7.450 < 9.685] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)L375.CB) [> 3.905 = 6.509 < 8.461] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N373.CB, (T0547)H384.CB) [> 4.182 = 6.970 < 9.062] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)R439.CB) [> 3.972 = 6.620 < 8.605] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)V436.CB) [> 4.612 = 7.686 < 9.992] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)N425.CB) [> 3.656 = 6.093 < 7.921] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)L429.CB) [> 2.679 = 4.464 < 5.804] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)I432.CB) [> 3.724 = 6.207 < 8.070] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)L429.CB) [> 4.532 = 7.553 < 9.819] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)S287.CB) [> 3.699 = 6.165 < 8.015] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)L313.CB) [> 4.094 = 6.823 < 8.869] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)L313.CB) [> 2.964 = 4.940 < 6.423] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)K414.CB) [> 2.843 = 4.739 < 6.161] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)K415.CB) [> 2.872 = 4.787 < 6.223] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)D393.CB) [> 4.099 = 6.832 < 8.882] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)L394.CB) [> 3.696 = 6.160 < 8.008] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)L420.CB) [> 3.874 = 6.457 < 8.395] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)G181.CA) [> 4.009 = 6.682 < 8.687] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)V277.CB) [> 3.299 = 5.499 < 7.149] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)K286.CB) [> 4.435 = 7.392 < 9.610] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)R402.CB) [> 3.930 = 6.550 < 8.515] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)E376.CB) [> 3.723 = 6.206 < 8.067] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)I306.CB) [> 3.726 = 6.210 < 8.072] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K304.CB, (T0547)F324.CB) [> 2.808 = 4.681 < 6.085] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)D562.CB) [> 3.601 = 6.002 < 7.803] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)G205.CA) [> 3.629 = 6.048 < 7.862] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)E546.CB) [> 4.425 = 7.375 < 9.587] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)V547.CB) [> 2.609 = 4.348 < 5.652] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)F447.CB) [> 2.852 = 4.754 < 6.180] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)S449.CB) [> 3.507 = 5.845 < 7.598] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)L446.CB) [> 4.150 = 6.916 < 8.991] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)F447.CB) [> 2.596 = 4.327 < 5.625] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)S449.CB) [> 4.154 = 6.924 < 9.001] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)F447.CB) [> 3.818 = 6.363 < 8.272] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)L375.CB) [> 3.509 = 5.848 < 7.603] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)D380.CB) [> 3.449 = 5.749 < 7.473] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)I551.CB) [> 4.308 = 7.180 < 9.334] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)A536.CB) [> 4.738 = 7.897 < 10.266] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E548.CB, (T0547)T559.CB) [> 3.987 = 6.644 < 8.637] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)I193.CB) [> 3.967 = 6.612 < 8.596] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I193.CB) [> 4.153 = 6.921 < 8.998] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)I193.CB) [> 4.157 = 6.929 < 9.007] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)I193.CB) [> 3.077 = 5.128 < 6.666] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)T207.CB) [> 4.028 = 6.714 < 8.728] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)E210.CB) [> 2.768 = 4.613 < 5.997] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)L211.CB) [> 2.868 = 4.780 < 6.214] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)A214.CB) [> 3.894 = 6.490 < 8.437] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)L258.CB) [> 4.615 = 7.692 < 10.000] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)H233.CB) [> 4.180 = 6.966 < 9.056] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)K95.CB) [> 4.641 = 7.735 < 10.056] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L100.CB, (T0547)V325.CB) [> 4.739 = 7.898 < 10.268] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)E210.CB) [> 4.748 = 7.913 < 10.286] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)N179.CB) [> 4.490 = 7.483 < 9.728] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T209.CB, (T0547)M261.CB) [> 4.179 = 6.966 < 9.055] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E294.CB, (T0547)F318.CB) [> 4.483 = 7.472 < 9.714] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)I306.CB) [> 4.271 = 7.118 < 9.254] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)L292.CB) [> 2.901 = 4.836 < 6.286] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)R293.CB) [> 3.641 = 6.069 < 7.890] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)E294.CB) [> 2.846 = 4.743 < 6.165] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R293.CB, (T0547)A307.CB) [> 4.509 = 7.514 < 9.768] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)I540.CB) [> 4.662 = 7.771 < 10.102] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)A307.CB) [> 4.484 = 7.474 < 9.716] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)E308.CB) [> 4.038 = 6.730 < 8.749] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)A251.CB) [> 3.882 = 6.470 < 8.412] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)F227.CB) [> 4.378 = 7.296 < 9.485] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)G273.CA) [> 4.094 = 6.824 < 8.871] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)Q554.CB) [> 3.804 = 6.340 < 8.242] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)N541.CB) [> 3.709 = 6.182 < 8.037] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)A327.CB) [> 4.625 = 7.708 < 10.020] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)I567.CB) [> 4.307 = 7.179 < 9.333] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)G549.CA) [> 4.247 = 7.079 < 9.203] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)E548.CB) [> 3.982 = 6.637 < 8.629] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)E546.CB) [> 4.246 = 7.076 < 9.199] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)Q309.CB) [> 4.437 = 7.396 < 9.614] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)T207.CB) [> 4.344 = 7.239 < 9.411] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R293.CB, (T0547)K310.CB) [> 4.297 = 7.161 < 9.310] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)R293.CB) [> 2.865 = 4.776 < 6.208] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)I153.CB) [> 3.707 = 6.179 < 8.032] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)L560.CB) [> 4.185 = 6.975 < 9.067] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)E314.CB) [> 4.683 = 7.805 < 10.147] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)E320.CB) [> 3.841 = 6.402 < 8.323] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R293.CB, (T0547)Q309.CB) [> 3.566 = 5.943 < 7.725] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E294.CB, (T0547)Q309.CB) [> 3.971 = 6.619 < 8.604] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)Q309.CB) [> 3.216 = 5.361 < 6.969] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)K245.CB) [> 4.685 = 7.809 < 10.151] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)L248.CB) [> 3.161 = 5.268 < 6.848] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)L248.CB) [> 3.849 = 6.414 < 8.339] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)A127.CB) [> 4.344 = 7.239 < 9.411] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N105.CB, (T0547)A127.CB) [> 3.674 = 6.123 < 7.959] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)F134.CB) [> 4.196 = 6.993 < 9.091] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)P335.CB) [> 4.266 = 7.110 < 9.242] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)I407.CB) [> 4.301 = 7.169 < 9.320] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)G205.CA) [> 2.214 = 3.690 < 4.797] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)H233.CB) [> 4.201 = 7.001 < 9.101] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)I319.CB) [> 3.988 = 6.646 < 8.640] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)A536.CB) [> 4.354 = 7.257 < 9.434] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)I432.CB) [> 4.109 = 6.848 < 8.902] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)E435.CB) [> 3.309 = 5.515 < 7.170] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)V436.CB) [> 3.444 = 5.739 < 7.461] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I432.CB) [> 4.619 = 7.698 < 10.007] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)I306.CB) [> 4.187 = 6.979 < 9.073] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A307.CB) [> 3.964 = 6.606 < 8.588] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)R402.CB) [> 4.546 = 7.576 < 9.849] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)R402.CB) [> 4.337 = 7.228 < 9.396] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)R402.CB) [> 2.971 = 4.952 < 6.437] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)T559.CB) [> 4.421 = 7.369 < 9.579] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)P451.CB) [> 4.416 = 7.360 < 9.568] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)Q448.CB) [> 4.180 = 6.966 < 9.056] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)H231.CB) [> 4.530 = 7.550 < 9.815] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)A170.CB) [> 4.459 = 7.432 < 9.662] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)K175.CB) [> 4.446 = 7.410 < 9.633] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)I180.CB) [> 3.984 = 6.639 < 8.631] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E172.CB, (T0547)N221.CB) [> 4.254 = 7.090 < 9.216] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E172.CB, (T0547)K222.CB) [> 2.424 = 4.040 < 5.252] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)N201.CB) [> 4.640 = 7.733 < 10.053] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)T207.CB) [> 4.293 = 7.155 < 9.301] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)N201.CB) [> 2.373 = 3.955 < 5.141] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)S208.CB) [> 4.640 = 7.733 < 10.052] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)I238.CB) [> 3.236 = 5.393 < 7.011] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)E240.CB) [> 3.360 = 5.599 < 7.279] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)H242.CB) [> 4.498 = 7.496 < 9.745] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)P243.CB) [> 3.957 = 6.596 < 8.574] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)Y363.CB) [> 3.968 = 6.613 < 8.596] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)P243.CB) [> 3.103 = 5.171 < 6.723] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)A247.CB) [> 4.535 = 7.558 < 9.825] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I200.CB, (T0547)H233.CB) [> 3.167 = 5.278 < 6.861] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I200.CB, (T0547)L234.CB) [> 4.711 = 7.851 < 10.207] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I200.CB, (T0547)G235.CA) [> 2.645 = 4.408 < 5.730] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)L365.CB) [> 4.050 = 6.749 < 8.774] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)N284.CB) [> 3.876 = 6.460 < 8.398] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)Y295.CB) [> 4.570 = 7.616 < 9.901] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L100.CB) [> 4.130 = 6.884 < 8.949] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)F79.CB) [> 4.604 = 7.674 < 9.976] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)G101.CA) [> 3.627 = 6.045 < 7.858] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)L303.CB) [> 4.776 = 7.960 < 10.348] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E72.CB, (T0547)E314.CB) [> 4.741 = 7.902 < 10.273] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K76.CB, (T0547)D316.CB) [> 2.597 = 4.328 < 5.627] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)A296.CB) [> 3.794 = 6.323 < 8.220] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)V300.CB) [> 4.755 = 7.925 < 10.303] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)G101.CA) [> 4.684 = 7.806 < 10.148] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)A110.CB) [> 4.785 = 7.975 < 10.367] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)H329.CB) [> 4.475 = 7.459 < 9.696] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)N123.CB) [> 4.057 = 6.762 < 8.791] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)E552.CB) [> 4.724 = 7.874 < 10.236] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)A121.CB) [> 4.736 = 7.893 < 10.261] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)I551.CB) [> 3.807 = 6.345 < 8.248] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)E552.CB) [> 4.795 = 7.992 < 10.389] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)F324.CB) [> 4.651 = 7.752 < 10.077] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)I551.CB) [> 4.018 = 6.696 < 8.705] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K95.CB, (T0547)A121.CB) [> 4.708 = 7.847 < 10.201] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)F324.CB) [> 4.059 = 6.764 < 8.794] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)G273.CA) [> 4.796 = 7.994 < 10.392] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)G126.CA) [> 4.467 = 7.445 < 9.679] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)M149.CB) [> 4.747 = 7.911 < 10.284] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)K177.CB) [> 3.218 = 5.364 < 6.973] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)S287.CB) [> 4.444 = 7.406 < 9.628] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)R323.CB) [> 4.669 = 7.781 < 10.115] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)I369.CB) [> 4.096 = 6.827 < 8.875] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K286.CB, (T0547)A296.CB) [> 3.171 = 5.285 < 6.871] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N297.CB, (T0547)E308.CB) [> 4.236 = 7.060 < 9.178] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D298.CB, (T0547)E308.CB) [> 4.269 = 7.115 < 9.249] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)E308.CB) [> 4.506 = 7.509 < 9.762] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)Q309.CB) [> 4.196 = 6.993 < 9.091] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)K310.CB) [> 3.321 = 5.534 < 7.195] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F301.CB, (T0547)K310.CB) [> 4.570 = 7.616 < 9.901] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F301.CB, (T0547)K311.CB) [> 3.664 = 6.107 < 7.939] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I302.CB, (T0547)K311.CB) [> 4.420 = 7.366 < 9.576] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)D316.CB) [> 4.634 = 7.723 < 10.040] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)A416.CB) [> 4.502 = 7.503 < 9.754] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)K352.CB) [> 4.555 = 7.591 < 9.869] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)D383.CB) [> 4.647 = 7.745 < 10.068] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)L394.CB) [> 4.476 = 7.461 < 9.699] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)T409.CB) [> 4.601 = 7.668 < 9.968] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)T413.CB) [> 4.613 = 7.688 < 9.994] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)H384.CB) [> 3.982 = 6.637 < 8.628] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)D401.CB) [> 4.756 = 7.926 < 10.304] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)I407.CB) [> 3.628 = 6.047 < 7.860] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)D401.CB) [> 4.624 = 7.707 < 10.019] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)Q448.CB) [> 4.276 = 7.126 < 9.264] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D434.CB, (T0547)S445.CB) [> 3.757 = 6.262 < 8.141] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)V277.CB) [> 4.688 = 7.813 < 10.156] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)Y295.CB) [> 4.525 = 7.542 < 9.804] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)L275.CB) [> 4.266 = 7.111 < 9.244] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)E285.CB) [> 3.111 = 5.185 < 6.741] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)A296.CB) [> 4.255 = 7.092 < 9.220] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)G273.CA) [> 3.706 = 6.176 < 8.029] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)Y295.CB) [> 3.335 = 5.559 < 7.227] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)G272.CA) [> 4.783 = 7.972 < 10.363] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)G273.CA) [> 4.572 = 7.620 < 9.906] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)G273.CA) [> 4.379 = 7.298 < 9.488] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)F301.CB) [> 4.172 = 6.954 < 9.040] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N249.CB, (T0547)V299.CB) [> 4.297 = 7.162 < 9.311] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N249.CB, (T0547)K310.CB) [> 4.316 = 7.193 < 9.351] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)I302.CB) [> 3.185 = 5.308 < 6.900] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)I269.CB) [> 4.748 = 7.914 < 10.288] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)Q309.CB) [> 4.581 = 7.635 < 9.925] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)L313.CB) [> 3.629 = 6.048 < 7.862] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T256.CB, (T0547)N265.CB) [> 4.214 = 7.024 < 9.131] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T256.CB, (T0547)L266.CB) [> 4.702 = 7.837 < 10.188] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T256.CB, (T0547)L313.CB) [> 3.754 = 6.256 < 8.133] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)Q309.CB) [> 4.397 = 7.329 < 9.528] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)L313.CB) [> 4.648 = 7.747 < 10.071] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)P315.CB) [> 3.904 = 6.506 < 8.458] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K264.CB, (T0547)E314.CB) [> 4.782 = 7.970 < 10.361] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)K310.CB) [> 4.118 = 6.863 < 8.922] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)P315.CB) [> 4.157 = 6.928 < 9.006] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)V547.CB) [> 3.575 = 5.958 < 7.745] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)S287.CB) [> 4.226 = 7.044 < 9.157] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)K310.CB) [> 3.752 = 6.254 < 8.130] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)E250.CB) [> 4.235 = 7.058 < 9.175] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)L399.CB) [> 4.271 = 7.118 < 9.253] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)D428.CB) [> 2.769 = 4.615 < 6.000] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)Y396.CB) [> 4.194 = 6.989 < 9.086] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)Y545.CB) [> 3.518 = 5.863 < 7.621] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S539.CB, (T0547)G549.CA) [> 3.829 = 6.381 < 8.295] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S539.CB, (T0547)I550.CB) [> 3.871 = 6.451 < 8.386] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S539.CB, (T0547)I551.CB) [> 4.476 = 7.461 < 9.699] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)L419.CB) [> 3.650 = 6.083 < 7.908] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)E320.CB) [> 4.512 = 7.520 < 9.776] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)D422.CB) [> 4.629 = 7.715 < 10.029] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)G421.CA) [> 4.563 = 7.606 < 9.887] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E125.CB, (T0547)G150.CA) [> 3.721 = 6.201 < 8.062] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)S236.CB) [> 4.317 = 7.195 < 9.354] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)K264.CB) [> 3.758 = 6.264 < 8.143] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E343.CB, (T0547)D398.CB) [> 3.952 = 6.587 < 8.563] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)I537.CB) [> 3.692 = 6.153 < 7.999] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)E535.CB) [> 3.239 = 5.398 < 7.017] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)E535.CB) [> 4.413 = 7.355 < 9.561] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)K311.CB) [> 3.923 = 6.538 < 8.499] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)T559.CB) [> 4.174 = 6.957 < 9.045] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N373.CB, (T0547)D383.CB) [> 3.811 = 6.352 < 8.257] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)K286.CB) [> 4.640 = 7.733 < 10.053] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)R288.CB) [> 4.416 = 7.361 < 9.569] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)I551.CB) [> 3.138 = 5.231 < 6.800] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)I551.CB) [> 3.684 = 6.140 < 7.982] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)E552.CB) [> 3.509 = 5.849 < 7.604] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)Q433.CB) [> 3.336 = 5.559 < 7.227] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)L429.CB) [> 2.941 = 4.902 < 6.372] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)Y279.CB) [> 4.060 = 6.767 < 8.797] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)D393.CB) [> 4.489 = 7.482 < 9.726] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)L419.CB) [> 3.343 = 5.571 < 7.242] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)A431.CB) [> 3.876 = 6.459 < 8.397] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)A431.CB) [> 4.427 = 7.379 < 9.592] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)Y440.CB) [> 4.515 = 7.526 < 9.783] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)Y440.CB) [> 3.601 = 6.002 < 7.802] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)Y440.CB) [> 4.422 = 7.370 < 9.581] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L420.CB) [> 4.020 = 6.700 < 8.710] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)M450.CB) [> 3.059 = 5.099 < 6.628] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)N443.CB) [> 3.823 = 6.371 < 8.283] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)A374.CB) [> 4.464 = 7.441 < 9.673] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N18.CB, (T0547)P91.CB) [> 3.661 = 6.101 < 7.931] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)P91.CB) [> 4.123 = 6.872 < 8.934] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)G92.CA) [> 4.441 = 7.401 < 9.622] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)D33.CB) [> 4.487 = 7.479 < 9.722] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)E438.CB) [> 4.097 = 6.829 < 8.878] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)L49.CB) [> 3.369 = 5.616 < 7.301] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)I551.CB) [> 4.033 = 6.721 < 8.738] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)K543.CB) [> 4.689 = 7.816 < 10.160] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L54.CB, (T0547)K415.CB) [> 4.659 = 7.766 < 10.095] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)F324.CB) [> 4.682 = 7.804 < 10.145] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)N328.CB) [> 4.681 = 7.801 < 10.142] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K57.CB, (T0547)N328.CB) [> 4.733 = 7.889 < 10.256] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K57.CB, (T0547)H329.CB) [> 4.649 = 7.749 < 10.073] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)K76.CB) [> 4.665 = 7.775 < 10.107] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)G78.CA) [> 4.689 = 7.815 < 10.160] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E60.CB, (T0547)K76.CB) [> 3.376 = 5.627 < 7.314] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)K76.CB) [> 4.342 = 7.237 < 9.408] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)V277.CB) [> 4.386 = 7.310 < 9.503] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)F79.CB) [> 4.512 = 7.519 < 9.775] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L97.CB) [> 4.736 = 7.893 < 10.262] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)L234.CB) [> 3.923 = 6.538 < 8.499] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)N270.CB) [> 3.563 = 5.938 < 7.720] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)T413.CB) [> 4.595 = 7.659 < 9.957] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)G549.CA) [> 3.182 = 5.303 < 6.894] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)E548.CB) [> 2.595 = 4.324 < 5.622] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)E546.CB) [> 3.949 = 6.582 < 8.556] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)L313.CB) [> 4.557 = 7.594 < 9.873] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G101.CA, (T0547)G126.CA) [> 4.474 = 7.457 < 9.694] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)K57.CB) [> 4.310 = 7.183 < 9.338] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)K27.CB) [> 3.011 = 5.019 < 6.524] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E12.CB, (T0547)K57.CB) [> 3.344 = 5.573 < 7.245] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)I412.CB) [> 4.692 = 7.821 < 10.167] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)K175.CB) [> 4.461 = 7.435 < 9.666] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N141.CB, (T0547)K175.CB) [> 4.412 = 7.354 < 9.560] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)S403.CB) [> 4.581 = 7.635 < 9.926] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)D393.CB) [> 3.957 = 6.596 < 8.574] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)Y255.CB) [> 4.727 = 7.878 < 10.241] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)Y255.CB) [> 4.693 = 7.821 < 10.168] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)Y255.CB) [> 3.901 = 6.502 < 8.453] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T209.CB, (T0547)I254.CB) [> 4.276 = 7.127 < 9.265] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)K543.CB) [> 3.565 = 5.942 < 7.725] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D33.CB, (T0547)G544.CA) [> 4.620 = 7.700 < 10.010] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D33.CB, (T0547)K543.CB) [> 2.315 = 3.859 < 5.016] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D33.CB, (T0547)E542.CB) [> 4.053 = 6.755 < 8.781] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)G544.CA) [> 4.486 = 7.476 < 9.719] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)K543.CB) [> 4.289 = 7.149 < 9.294] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)A427.CB) [> 4.273 = 7.122 < 9.258] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D33.CB, (T0547)L441.CB) [> 4.537 = 7.562 < 9.830] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)L411.CB) [> 4.107 = 6.846 < 8.899] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)H410.CB) [> 4.441 = 7.401 < 9.622] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)Y377.CB) [> 4.419 = 7.364 < 9.574] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)S287.CB) [> 4.628 = 7.713 < 10.026] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)I238.CB) [> 4.403 = 7.339 < 9.541] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)A146.CB) [> 4.735 = 7.892 < 10.259] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G64.CA, (T0547)K76.CB) [> 3.879 = 6.465 < 8.404] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)L430.CB) [> 4.104 = 6.841 < 8.893] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)N373.CB) [> 4.129 = 6.882 < 8.947] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)Y106.CB) [> 4.729 = 7.882 < 10.247] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)L292.CB) [> 4.657 = 7.761 < 10.090] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)K415.CB) [> 4.525 = 7.542 < 9.805] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)G421.CA) [> 4.192 = 6.986 < 9.082] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)L420.CB) [> 3.297 = 5.496 < 7.144] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)A416.CB) [> 3.924 = 6.540 < 8.502] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)D422.CB) [> 4.383 = 7.304 < 9.496] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)K423.CB) [> 4.281 = 7.134 < 9.275] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)I369.CB) [> 4.337 = 7.229 < 9.398] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)D380.CB) [> 4.205 = 7.008 < 9.111] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)S372.CB) [> 4.215 = 7.025 < 9.132] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)K414.CB) [> 4.106 = 6.843 < 8.895] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)Y290.CB) [> 3.712 = 6.187 < 8.043] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G150.CA, (T0547)E172.CB) [> 4.561 = 7.601 < 9.882] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)E172.CB) [> 4.741 = 7.902 < 10.272] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)E172.CB) [> 4.765 = 7.941 < 10.324] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)I478.CB) [> 4.047 = 6.745 < 8.769] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)T409.CB) [> 4.355 = 7.258 < 9.435] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)I407.CB) [> 3.123 = 5.206 < 6.768] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K283.CB, (T0547)I412.CB) [> 3.283 = 5.471 < 7.112] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G205.CA) [> 4.497 = 7.495 < 9.743] w=0.040 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)P178.CB) [> 4.623 = 7.704 < 10.016] w=0.031 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)D316.CB) [> 3.918 = 6.530 < 8.489] w=0.029 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E115.CB, (T0547)I129.CB) [> 4.629 = 7.715 < 10.029] w=0.029 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)A296.CB) [> 4.694 = 7.823 < 10.169] w=0.029 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)A296.CB) [> 4.580 = 7.634 < 9.924] w=0.029 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)E294.CB) [> 4.050 = 6.750 < 8.775] w=0.029 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)D298.CB) [> 4.566 = 7.610 < 9.893] w=0.029 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E225.CB, (T0547)N265.CB) [> 4.063 = 6.772 < 8.804] w=0.028 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)E314.CB) [> 4.340 = 7.233 < 9.403] w=0.028 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T256.CB, (T0547)E314.CB) [> 4.604 = 7.673 < 9.975] w=0.028 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)D312.CB) [> 3.519 = 5.865 < 7.624] w=0.028 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)D312.CB) [> 3.876 = 6.459 < 8.397] w=0.028 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)D312.CB) [> 4.280 = 7.133 < 9.272] w=0.028 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)L223.CB) [> 4.572 = 7.619 < 9.905] w=0.028 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)L223.CB) [> 4.564 = 7.606 < 9.888] w=0.028 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)K175.CB) [> 4.580 = 7.633 < 9.923] w=0.028 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)F232.CB) [> 4.631 = 7.719 < 10.035] w=0.028 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)A247.CB) [> 4.566 = 7.611 < 9.894] w=0.028 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q281.CB, (T0547)T291.CB) [> 4.084 = 6.806 < 8.848] w=0.028 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)S445.CB) [> 3.808 = 6.347 < 8.251] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)S445.CB) [> 2.569 = 4.281 < 5.566] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)S445.CB) [> 3.227 = 5.379 < 6.992] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)L446.CB) [> 2.478 = 4.130 < 5.369] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)S445.CB) [> 3.900 = 6.500 < 8.450] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L224.CB) [> 4.090 = 6.816 < 8.861] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)D398.CB) [> 3.718 = 6.197 < 8.056] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)E308.CB) [> 4.054 = 6.757 < 8.785] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)Q424.CB) [> 4.418 = 7.364 < 9.573] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)N425.CB) [> 3.978 = 6.629 < 8.618] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)Q424.CB) [> 2.758 = 4.597 < 5.976] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)G421.CA) [> 3.711 = 6.185 < 8.041] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)N425.CB) [> 3.913 = 6.521 < 8.478] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)N425.CB) [> 2.833 = 4.721 < 6.138] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)N425.CB) [> 3.340 = 5.567 < 7.237] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)P451.CB) [> 3.917 = 6.528 < 8.487] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)P451.CB) [> 4.535 = 7.559 < 9.827] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)Q424.CB) [> 3.511 = 5.852 < 7.608] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)K423.CB) [> 4.216 = 7.027 < 9.136] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)Q424.CB) [> 4.533 = 7.555 < 9.821] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)Q424.CB) [> 4.119 = 6.865 < 8.925] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)P176.CB) [> 3.279 = 5.465 < 7.104] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)G395.CA) [> 4.626 = 7.710 < 10.023] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)S387.CB) [> 4.261 = 7.101 < 9.231] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)E386.CB) [> 4.196 = 6.994 < 9.092] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)H384.CB) [> 3.331 = 5.551 < 7.217] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)H384.CB) [> 3.306 = 5.511 < 7.164] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E314.CB, (T0547)N328.CB) [> 4.136 = 6.893 < 8.961] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)I432.CB) [> 2.968 = 4.947 < 6.431] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)Q433.CB) [> 3.521 = 5.868 < 7.629] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)I432.CB) [> 2.947 = 4.912 < 6.385] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)L429.CB) [> 2.708 = 4.514 < 5.868] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)A416.CB) [> 4.337 = 7.228 < 9.397] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)L419.CB) [> 3.756 = 6.261 < 8.139] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)A416.CB) [> 4.224 = 7.040 < 9.152] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L224.CB) [> 4.529 = 7.548 < 9.812] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)N284.CB) [> 3.963 = 6.605 < 8.586] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)L446.CB) [> 3.661 = 6.102 < 7.932] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)E172.CB) [> 3.324 = 5.540 < 7.201] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)D168.CB) [> 4.591 = 7.652 < 9.947] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)A307.CB) [> 4.387 = 7.312 < 9.505] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)I306.CB) [> 4.629 = 7.715 < 10.029] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)A307.CB) [> 3.165 = 5.274 < 6.857] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)I306.CB) [> 3.719 = 6.199 < 8.058] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I306.CB) [> 3.592 = 5.987 < 7.783] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)N284.CB) [> 4.208 = 7.014 < 9.118] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)F282.CB) [> 4.112 = 6.854 < 8.910] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)K310.CB) [> 4.259 = 7.098 < 9.227] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)N141.CB) [> 4.422 = 7.369 < 9.580] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S445.CB, (T0547)Y545.CB) [> 4.156 = 6.927 < 9.005] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)I550.CB) [> 4.319 = 7.198 < 9.357] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)G549.CA) [> 4.029 = 6.716 < 8.730] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)Q400.CB) [> 3.716 = 6.194 < 8.052] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)N404.CB) [> 4.574 = 7.624 < 9.911] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)K310.CB) [> 4.014 = 6.689 < 8.696] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)I432.CB) [> 4.524 = 7.541 < 9.803] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)E406.CB) [> 4.788 = 7.980 < 10.375] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)T534.CB) [> 4.324 = 7.207 < 9.369] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)Y440.CB) [> 4.176 = 6.961 < 9.049] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)K311.CB) [> 4.274 = 7.123 < 9.259] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)F204.CB) [> 4.250 = 7.084 < 9.209] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)T559.CB) [> 4.085 = 6.809 < 8.851] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)I537.CB) [> 3.769 = 6.281 < 8.166] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)L420.CB) [> 3.810 = 6.350 < 8.255] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)A431.CB) [> 4.743 = 7.905 < 10.277] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E308.CB, (T0547)F324.CB) [> 3.876 = 6.460 < 8.397] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)F324.CB) [> 4.149 = 6.915 < 8.990] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)S321.CB) [> 3.329 = 5.549 < 7.214] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)F318.CB) [> 3.020 = 5.032 < 6.542] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K304.CB, (T0547)V325.CB) [> 4.638 = 7.730 < 10.048] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K304.CB, (T0547)R323.CB) [> 2.846 = 4.743 < 6.166] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K304.CB, (T0547)G322.CA) [> 3.197 = 5.328 < 6.926] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K304.CB, (T0547)S321.CB) [> 2.941 = 4.901 < 6.372] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)Q309.CB) [> 3.289 = 5.481 < 7.125] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)I306.CB) [> 3.327 = 5.545 < 7.209] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)N305.CB) [> 2.447 = 4.078 < 5.301] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)K310.CB) [> 4.716 = 7.861 < 10.219] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)N305.CB) [> 4.586 = 7.643 < 9.936] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)Q433.CB) [> 3.240 = 5.401 < 7.021] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)A307.CB) [> 3.578 = 5.963 < 7.752] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)N373.CB) [> 3.007 = 5.012 < 6.516] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)E376.CB) [> 3.295 = 5.491 < 7.138] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)Q554.CB) [> 4.357 = 7.262 < 9.441] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)T409.CB) [> 4.661 = 7.769 < 10.099] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)E172.CB) [> 3.869 = 6.449 < 8.384] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S539.CB, (T0547)T559.CB) [> 3.639 = 6.064 < 7.883] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S539.CB, (T0547)I556.CB) [> 3.370 = 5.617 < 7.302] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S539.CB, (T0547)S555.CB) [> 3.598 = 5.997 < 7.796] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E505.CB, (T0547)T534.CB) [> 3.873 = 6.455 < 8.392] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)S477.CB) [> 4.222 = 7.036 < 9.147] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)D364.CB) [> 4.770 = 7.950 < 10.335] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)E552.CB) [> 3.234 = 5.390 < 7.006] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)Y440.CB) [> 3.370 = 5.616 < 7.301] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)I432.CB) [> 4.061 = 6.769 < 8.800] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)F392.CB) [> 4.474 = 7.457 < 9.694] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)L456.CB) [> 2.314 = 3.857 < 5.014] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)G455.CA) [> 2.903 = 4.838 < 6.289] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)W454.CB) [> 4.042 = 6.736 < 8.757] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K76.CB, (T0547)D312.CB) [> 4.078 = 6.797 < 8.836] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K76.CB, (T0547)K311.CB) [> 3.886 = 6.476 < 8.419] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S403.CB, (T0547)F444.CB) [> 4.486 = 7.477 < 9.721] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)V442.CB) [> 4.263 = 7.106 < 9.237] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)D383.CB) [> 3.762 = 6.270 < 8.151] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I540.CB) [> 4.317 = 7.195 < 9.354] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)N541.CB) [> 4.446 = 7.411 < 9.634] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)I540.CB) [> 2.549 = 4.249 < 5.523] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)E314.CB) [> 4.708 = 7.847 < 10.202] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)K311.CB) [> 4.497 = 7.494 < 9.743] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)T482.CB) [> 3.689 = 6.149 < 7.993] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)I551.CB) [> 3.065 = 5.109 < 6.642] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)I550.CB) [> 3.255 = 5.426 < 7.054] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R137.CB, (T0547)L163.CB) [> 4.618 = 7.697 < 10.007] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S555.CB, (T0547)I567.CB) [> 4.572 = 7.620 < 9.906] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)Y440.CB) [> 4.534 = 7.557 < 9.824] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)K286.CB) [> 4.133 = 6.889 < 8.956] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)K286.CB) [> 3.947 = 6.578 < 8.552] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)Y440.CB) [> 3.373 = 5.622 < 7.309] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)S445.CB) [> 4.592 = 7.654 < 9.950] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)L563.CB) [> 3.914 = 6.523 < 8.480] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)D562.CB) [> 3.844 = 6.406 < 8.328] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)L420.CB) [> 4.395 = 7.324 < 9.522] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)E386.CB) [> 4.181 = 6.968 < 9.058] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)K286.CB) [> 3.494 = 5.824 < 7.571] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)F282.CB) [> 4.119 = 6.865 < 8.925] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)F447.CB) [> 4.081 = 6.802 < 8.842] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)T482.CB) [> 4.384 = 7.306 < 9.498] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S403.CB, (T0547)D480.CB) [> 4.593 = 7.655 < 9.952] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)I417.CB) [> 4.029 = 6.715 < 8.730] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)I417.CB) [> 3.707 = 6.178 < 8.031] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)D503.CB) [> 3.615 = 6.026 < 7.834] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)E505.CB) [> 3.509 = 5.849 < 7.603] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)D503.CB) [> 3.931 = 6.552 < 8.518] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)E505.CB) [> 4.053 = 6.756 < 8.783] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)I540.CB) [> 4.447 = 7.412 < 9.636] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)K414.CB) [> 4.500 = 7.501 < 9.751] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)I254.CB) [> 3.757 = 6.262 < 8.141] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)L258.CB) [> 4.127 = 6.878 < 8.941] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)Y255.CB) [> 2.859 = 4.766 < 6.195] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)I254.CB) [> 2.670 = 4.450 < 5.785] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)G252.CA) [> 3.855 = 6.425 < 8.353] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)N179.CB) [> 4.623 = 7.705 < 10.017] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)N179.CB) [> 4.655 = 7.759 < 10.086] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)N105.CB) [> 4.496 = 7.494 < 9.742] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)K267.CB) [> 4.655 = 7.758 < 10.086] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E60.CB, (T0547)K102.CB) [> 3.295 = 5.492 < 7.139] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)K102.CB) [> 2.845 = 4.742 < 6.165] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)Q448.CB) [> 3.623 = 6.038 < 7.849] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)K311.CB) [> 4.317 = 7.194 < 9.353] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)H151.CB) [> 4.524 = 7.541 < 9.803] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)K310.CB) [> 4.622 = 7.703 < 10.014] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)D562.CB) [> 4.403 = 7.338 < 9.540] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)D562.CB) [> 2.188 = 3.647 < 4.741] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)T559.CB) [> 3.937 = 6.561 < 8.529] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)E294.CB) [> 2.524 = 4.207 < 5.468] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)A334.CB) [> 4.064 = 6.773 < 8.805] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)K311.CB) [> 4.376 = 7.293 < 9.481] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L563.CB) [> 3.546 = 5.910 < 7.683] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)I556.CB) [> 4.339 = 7.231 < 9.401] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N221.CB, (T0547)L266.CB) [> 4.237 = 7.061 < 9.180] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N221.CB, (T0547)K264.CB) [> 2.876 = 4.794 < 6.232] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)V325.CB) [> 4.684 = 7.807 < 10.149] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)G395.CA) [> 3.685 = 6.142 < 7.985] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)L385.CB) [> 3.810 = 6.351 < 8.256] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)T413.CB) [> 3.262 = 5.436 < 7.067] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)I412.CB) [> 4.100 = 6.834 < 8.884] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)N328.CB) [> 4.087 = 6.812 < 8.855] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)K310.CB) [> 4.155 = 6.926 < 9.003] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I153.CB) [> 3.884 = 6.474 < 8.416] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L394.CB, (T0547)L408.CB) [> 4.651 = 7.752 < 10.078] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)Y396.CB) [> 4.249 = 7.082 < 9.207] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L391.CB) [> 4.735 = 7.892 < 10.260] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)K310.CB) [> 3.134 = 5.223 < 6.790] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)A374.CB) [> 4.029 = 6.715 < 8.730] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)F318.CB) [> 2.982 = 4.969 < 6.460] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)F318.CB) [> 4.545 = 7.575 < 9.848] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)I556.CB) [> 4.389 = 7.314 < 9.509] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)I556.CB) [> 3.065 = 5.108 < 6.640] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)I556.CB) [> 2.487 = 4.145 < 5.388] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)A427.CB) [> 4.146 = 6.910 < 8.983] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)A427.CB) [> 2.685 = 4.474 < 5.817] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)A427.CB) [> 3.698 = 6.164 < 8.013] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)A427.CB) [> 3.484 = 5.807 < 7.549] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)V436.CB) [> 2.996 = 4.994 < 6.492] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)E435.CB) [> 4.615 = 7.691 < 9.999] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)V436.CB) [> 3.059 = 5.098 < 6.627] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)S539.CB) [> 4.214 = 7.023 < 9.130] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)Q554.CB) [> 4.642 = 7.736 < 10.057] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)Q554.CB) [> 3.779 = 6.298 < 8.188] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)E552.CB) [> 1.627 = 2.712 < 3.526] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)I551.CB) [> 2.959 = 4.932 < 6.412] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)E552.CB) [> 4.612 = 7.687 < 9.993] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)Y545.CB) [> 3.279 = 5.465 < 7.104] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)E535.CB) [> 4.151 = 6.918 < 8.993] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)Y545.CB) [> 2.725 = 4.542 < 5.905] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)Y545.CB) [> 3.948 = 6.580 < 8.555] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)E314.CB) [> 4.661 = 7.769 < 10.100] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)F232.CB) [> 4.209 = 7.016 < 9.120] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)F227.CB) [> 4.370 = 7.283 < 9.467] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)K352.CB) [> 3.436 = 5.727 < 7.445] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)K310.CB) [> 3.959 = 6.598 < 8.577] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E435.CB, (T0547)V547.CB) [> 4.181 = 6.968 < 9.058] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E435.CB, (T0547)E546.CB) [> 3.711 = 6.185 < 8.041] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E435.CB, (T0547)Y545.CB) [> 3.720 = 6.201 < 8.061] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D434.CB, (T0547)V547.CB) [> 3.996 = 6.660 < 8.658] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D434.CB, (T0547)I538.CB) [> 3.342 = 5.570 < 7.241] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)D562.CB) [> 3.147 = 5.244 < 6.818] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)D562.CB) [> 4.394 = 7.323 < 9.520] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)D562.CB) [> 3.670 = 6.116 < 7.951] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)D434.CB) [> 4.463 = 7.438 < 9.669] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)V436.CB) [> 4.190 = 6.983 < 9.078] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)E435.CB) [> 4.441 = 7.401 < 9.622] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)V436.CB) [> 4.451 = 7.419 < 9.644] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)A247.CB) [> 4.559 = 7.599 < 9.878] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)T413.CB) [> 3.143 = 5.238 < 6.810] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R402.CB, (T0547)F447.CB) [> 3.463 = 5.772 < 7.504] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R402.CB, (T0547)L446.CB) [> 2.719 = 4.531 < 5.891] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)L446.CB) [> 4.381 = 7.302 < 9.493] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)R402.CB) [> 3.659 = 6.098 < 7.927] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)I537.CB) [> 3.112 = 5.187 < 6.743] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)Q554.CB) [> 2.769 = 4.615 < 5.999] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)T559.CB) [> 3.252 = 5.420 < 7.046] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)D558.CB) [> 4.352 = 7.254 < 9.430] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)I556.CB) [> 2.556 = 4.260 < 5.539] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)S555.CB) [> 3.138 = 5.230 < 6.799] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)Q554.CB) [> 2.978 = 4.963 < 6.451] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)L446.CB) [> 4.156 = 6.927 < 9.004] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)F324.CB) [> 3.763 = 6.272 < 8.153] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)S321.CB) [> 3.974 = 6.623 < 8.610] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)K283.CB) [> 4.075 = 6.791 < 8.829] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)L303.CB) [> 3.696 = 6.159 < 8.007] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L303.CB) [> 4.003 = 6.672 < 8.673] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)F232.CB) [> 4.457 = 7.429 < 9.657] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)L385.CB) [> 4.542 = 7.570 < 9.841] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)E542.CB) [> 3.687 = 6.146 < 7.989] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)N541.CB) [> 4.534 = 7.556 < 9.823] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)E542.CB) [> 4.208 = 7.013 < 9.117] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)E542.CB) [> 4.124 = 6.873 < 8.935] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)K283.CB) [> 3.997 = 6.662 < 8.661] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)T559.CB) [> 4.195 = 6.992 < 9.090] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)D558.CB) [> 3.130 = 5.217 < 6.782] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)T534.CB) [> 4.478 = 7.464 < 9.703] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)Q400.CB) [> 4.641 = 7.736 < 10.056] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)I407.CB) [> 4.722 = 7.871 < 10.232] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)K543.CB) [> 3.905 = 6.509 < 8.462] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)I306.CB) [> 3.543 = 5.906 < 7.677] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)V397.CB) [> 4.251 = 7.085 < 9.211] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)S381.CB) [> 3.777 = 6.295 < 8.184] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)Q554.CB) [> 4.215 = 7.025 < 9.133] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)I319.CB) [> 3.830 = 6.383 < 8.297] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)F318.CB) [> 2.864 = 4.773 < 6.204] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)E314.CB) [> 4.100 = 6.833 < 8.883] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)P315.CB) [> 3.480 = 5.800 < 7.540] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)L303.CB) [> 3.909 = 6.516 < 8.470] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)D298.CB) [> 4.733 = 7.888 < 10.254] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)Y290.CB) [> 4.680 = 7.800 < 10.141] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L244.CB) [> 3.929 = 6.549 < 8.513] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)N265.CB) [> 3.933 = 6.555 < 8.522] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)K203.CB) [> 4.633 = 7.722 < 10.038] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)A307.CB) [> 4.092 = 6.820 < 8.866] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)V299.CB) [> 3.973 = 6.621 < 8.608] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)K304.CB) [> 3.349 = 5.581 < 7.256] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)T559.CB) [> 4.377 = 7.295 < 9.484] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K286.CB, (T0547)P315.CB) [> 2.851 = 4.751 < 6.176] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)A146.CB) [> 4.149 = 6.915 < 8.989] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)K304.CB) [> 4.624 = 7.707 < 10.019] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)F447.CB) [> 3.431 = 5.718 < 7.433] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)L446.CB) [> 4.024 = 6.706 < 8.718] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)D564.CB) [> 4.166 = 6.943 < 9.025] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q400.CB, (T0547)N425.CB) [> 4.575 = 7.625 < 9.913] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)E548.CB) [> 2.272 = 3.786 < 4.922] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)V547.CB) [> 3.684 = 6.141 < 7.983] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)E548.CB) [> 3.996 = 6.661 < 8.659] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)D562.CB) [> 4.284 = 7.140 < 9.282] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)D562.CB) [> 3.132 = 5.220 < 6.787] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)T559.CB) [> 4.115 = 6.858 < 8.915] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)A536.CB) [> 4.640 = 7.733 < 10.053] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)D562.CB) [> 3.008 = 5.013 < 6.516] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)L563.CB) [> 3.127 = 5.211 < 6.775] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)D562.CB) [> 3.136 = 5.226 < 6.794] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)A427.CB) [> 3.727 = 6.212 < 8.075] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)N541.CB) [> 3.218 = 5.363 < 6.972] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)G126.CA) [> 4.775 = 7.958 < 10.346] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)Q89.CB) [> 4.403 = 7.339 < 9.540] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)T534.CB) [> 3.414 = 5.691 < 7.398] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)D398.CB) [> 4.656 = 7.759 < 10.087] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)L563.CB) [> 3.404 = 5.674 < 7.376] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)D562.CB) [> 3.970 = 6.617 < 8.602] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)T559.CB) [> 4.417 = 7.362 < 9.571] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)D564.CB) [> 4.008 = 6.680 < 8.683] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)L563.CB) [> 2.931 = 4.886 < 6.352] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)G549.CA) [> 2.890 = 4.817 < 6.262] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)A431.CB) [> 4.078 = 6.797 < 8.836] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)G549.CA) [> 4.526 = 7.543 < 9.806] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)K423.CB) [> 3.659 = 6.099 < 7.929] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)K423.CB) [> 3.918 = 6.529 < 8.488] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)Q424.CB) [> 2.873 = 4.789 < 6.225] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)P426.CB) [> 4.228 = 7.047 < 9.162] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)Q424.CB) [> 3.571 = 5.952 < 7.737] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F340.CB, (T0547)H410.CB) [> 4.748 = 7.913 < 10.287] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)M261.CB) [> 3.586 = 5.977 < 7.770] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)K286.CB) [> 4.244 = 7.073 < 9.195] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)Y396.CB) [> 4.586 = 7.643 < 9.936] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L275.CB) [> 4.475 = 7.459 < 9.696] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L313.CB) [> 4.252 = 7.087 < 9.213] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)E548.CB) [> 3.634 = 6.057 < 7.874] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)L313.CB) [> 4.682 = 7.804 < 10.145] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)R288.CB) [> 3.994 = 6.656 < 8.653] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)A427.CB) [> 3.838 = 6.396 < 8.315] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)Y545.CB) [> 4.284 = 7.140 < 9.282] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)I540.CB) [> 4.258 = 7.096 < 9.225] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)I538.CB) [> 4.320 = 7.200 < 9.360] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)S445.CB) [> 4.271 = 7.118 < 9.253] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)K414.CB) [> 4.731 = 7.885 < 10.250] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)I538.CB) [> 4.265 = 7.109 < 9.241] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)S445.CB) [> 3.352 = 5.587 < 7.263] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)L446.CB) [> 3.588 = 5.980 < 7.774] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)L420.CB) [> 4.454 = 7.424 < 9.651] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)A553.CB) [> 3.896 = 6.494 < 8.442] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)L418.CB) [> 3.665 = 6.108 < 7.940] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)N152.CB) [> 4.744 = 7.907 < 10.280] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)A127.CB) [> 4.726 = 7.876 < 10.239] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K76.CB, (T0547)A307.CB) [> 4.682 = 7.803 < 10.143] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K76.CB, (T0547)K304.CB) [> 3.408 = 5.680 < 7.384] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K76.CB, (T0547)L303.CB) [> 3.111 = 5.186 < 6.741] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K76.CB, (T0547)F301.CB) [> 4.741 = 7.901 < 10.272] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K76.CB, (T0547)V299.CB) [> 4.603 = 7.671 < 9.972] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)F324.CB) [> 4.747 = 7.912 < 10.286] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)S321.CB) [> 4.114 = 6.856 < 8.913] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)I319.CB) [> 3.607 = 6.011 < 7.815] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)L292.CB) [> 3.372 = 5.620 < 7.306] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)L244.CB) [> 4.653 = 7.754 < 10.081] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)Q237.CB) [> 3.369 = 5.616 < 7.301] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)S202.CB) [> 3.394 = 5.656 < 7.353] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)N201.CB) [> 4.349 = 7.248 < 9.422] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)Q237.CB) [> 3.689 = 6.148 < 7.992] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)N265.CB) [> 4.280 = 7.134 < 9.274] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)L223.CB) [> 4.606 = 7.676 < 9.979] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K175.CB, (T0547)Q226.CB) [> 4.633 = 7.721 < 10.038] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K175.CB, (T0547)K222.CB) [> 3.257 = 5.428 < 7.056] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K175.CB, (T0547)N221.CB) [> 3.959 = 6.598 < 8.578] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G150.CA, (T0547)K177.CB) [> 3.856 = 6.427 < 8.355] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E148.CB, (T0547)P178.CB) [> 4.497 = 7.496 < 9.744] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)E172.CB) [> 4.781 = 7.968 < 10.358] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E138.CB, (T0547)E172.CB) [> 4.608 = 7.680 < 9.984] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R137.CB, (T0547)D168.CB) [> 4.657 = 7.762 < 10.090] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)I157.CB) [> 4.710 = 7.850 < 10.205] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)G159.CA) [> 4.720 = 7.867 < 10.227] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)I145.CB) [> 4.557 = 7.595 < 9.874] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)D136.CB) [> 4.746 = 7.909 < 10.282] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)A146.CB) [> 4.469 = 7.449 < 9.683] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)F144.CB) [> 4.464 = 7.440 < 9.673] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N96.CB, (T0547)S539.CB) [> 4.754 = 7.923 < 10.300] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N96.CB, (T0547)E435.CB) [> 4.745 = 7.908 < 10.281] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)Q448.CB) [> 3.818 = 6.363 < 8.272] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)L429.CB) [> 4.619 = 7.698 < 10.007] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)A405.CB) [> 4.149 = 6.915 < 8.990] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)L351.CB) [> 4.424 = 7.374 < 9.586] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)S539.CB) [> 4.091 = 6.818 < 8.863] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)E535.CB) [> 3.483 = 5.806 < 7.547] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)I537.CB) [> 3.897 = 6.496 < 8.444] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)V442.CB) [> 3.922 = 6.537 < 8.499] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)S477.CB) [> 4.322 = 7.203 < 9.363] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E37.CB, (T0547)I333.CB) [> 4.727 = 7.878 < 10.241] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)L47.CB) [> 4.560 = 7.599 < 9.879] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)Y440.CB) [> 4.707 = 7.845 < 10.198] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)R439.CB) [> 3.655 = 6.092 < 7.919] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D33.CB, (T0547)I540.CB) [> 4.752 = 7.920 < 10.296] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D33.CB, (T0547)R439.CB) [> 2.387 = 3.978 < 5.172] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D33.CB, (T0547)E438.CB) [> 3.809 = 6.349 < 8.253] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D33.CB, (T0547)V436.CB) [> 4.737 = 7.895 < 10.264] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D33.CB, (T0547)N373.CB) [> 3.958 = 6.597 < 8.577] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D33.CB, (T0547)S372.CB) [> 4.134 = 6.890 < 8.957] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D33.CB, (T0547)K370.CB) [> 4.783 = 7.971 < 10.363] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)R439.CB) [> 4.333 = 7.222 < 9.388] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)L49.CB) [> 4.739 = 7.898 < 10.268] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)H329.CB) [> 4.652 = 7.753 < 10.080] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)L441.CB) [> 4.522 = 7.537 < 9.798] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)E438.CB) [> 4.358 = 7.264 < 9.443] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)E435.CB) [> 4.139 = 6.898 < 8.968] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)V300.CB) [> 3.421 = 5.702 < 7.412] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)K76.CB) [> 4.796 = 7.994 < 10.392] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)S287.CB) [> 4.185 = 6.974 < 9.067] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)Y75.CB) [> 3.169 = 5.282 < 6.867] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E60.CB, (T0547)Y75.CB) [> 4.473 = 7.454 < 9.691] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)Y75.CB) [> 3.807 = 6.345 < 8.249] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)Y75.CB) [> 4.456 = 7.427 < 9.656] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)E438.CB) [> 4.540 = 7.567 < 9.838] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)I540.CB) [> 4.311 = 7.184 < 9.340] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)N541.CB) [> 4.134 = 6.890 < 8.957] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)N541.CB) [> 3.302 = 5.503 < 7.154] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)S477.CB) [> 4.077 = 6.794 < 8.833] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L446.CB) [> 4.582 = 7.637 < 9.928] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L358.CB) [> 4.255 = 7.091 < 9.219] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)F447.CB) [> 4.544 = 7.573 < 9.845] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)E535.CB) [> 4.246 = 7.076 < 9.199] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)E535.CB) [> 4.089 = 6.816 < 8.860] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)I417.CB) [> 4.662 = 7.769 < 10.100] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)D398.CB) [> 2.816 = 4.693 < 6.101] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)F392.CB) [> 4.586 = 7.644 < 9.937] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)L389.CB) [> 4.713 = 7.855 < 10.211] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)E386.CB) [> 4.681 = 7.801 < 10.142] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)S387.CB) [> 4.552 = 7.587 < 9.863] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)H384.CB) [> 4.765 = 7.941 < 10.323] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)I369.CB) [> 3.878 = 6.464 < 8.403] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)S381.CB) [> 4.776 = 7.960 < 10.348] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)Q400.CB) [> 4.678 = 7.797 < 10.137] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)L399.CB) [> 4.252 = 7.086 < 9.212] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)I382.CB) [> 4.415 = 7.358 < 9.566] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)L385.CB) [> 4.609 = 7.682 < 9.987] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)I382.CB) [> 4.668 = 7.780 < 10.113] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)H384.CB) [> 4.774 = 7.957 < 10.344] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)L358.CB) [> 4.547 = 7.578 < 9.852] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)P371.CB) [> 4.555 = 7.592 < 9.870] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I369.CB) [> 3.623 = 6.038 < 7.850] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I306.CB, (T0547)I317.CB) [> 3.160 = 5.267 < 6.847] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)K311.CB) [> 4.063 = 6.771 < 8.802] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R288.CB, (T0547)F324.CB) [> 4.214 = 7.024 < 9.131] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I540.CB, (T0547)I551.CB) [> 3.705 = 6.174 < 8.026] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I540.CB, (T0547)I550.CB) [> 4.248 = 7.080 < 9.204] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I540.CB, (T0547)G549.CA) [> 2.758 = 4.597 < 5.976] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)I551.CB) [> 2.702 = 4.503 < 5.854] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E435.CB, (T0547)S445.CB) [> 3.316 = 5.527 < 7.184] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D434.CB, (T0547)L446.CB) [> 3.393 = 5.656 < 7.352] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)L446.CB) [> 2.932 = 4.887 < 6.353] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)Q448.CB) [> 3.424 = 5.707 < 7.419] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)S449.CB) [> 2.465 = 4.108 < 5.341] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)M450.CB) [> 3.853 = 6.421 < 8.347] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q424.CB, (T0547)S449.CB) [> 4.320 = 7.201 < 9.361] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)L446.CB) [> 4.471 = 7.451 < 9.686] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)V397.CB) [> 4.456 = 7.426 < 9.654] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)D398.CB) [> 2.699 = 4.499 < 5.848] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)I407.CB) [> 4.366 = 7.276 < 9.459] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)L408.CB) [> 4.260 = 7.100 < 9.230] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)S403.CB) [> 4.169 = 6.949 < 9.034] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)Q400.CB) [> 3.241 = 5.402 < 7.023] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)T413.CB) [> 3.632 = 6.054 < 7.870] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)I412.CB) [> 3.593 = 5.988 < 7.784] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)H384.CB) [> 4.520 = 7.534 < 9.794] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)Y396.CB) [> 3.959 = 6.598 < 8.577] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)Y290.CB) [> 4.721 = 7.869 < 10.230] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)K286.CB) [> 4.486 = 7.477 < 9.720] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)I417.CB) [> 4.682 = 7.804 < 10.145] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A416.CB) [> 4.760 = 7.934 < 10.314] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)K367.CB) [> 4.728 = 7.881 < 10.245] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)V277.CB) [> 3.540 = 5.900 < 7.670] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)Y295.CB) [> 3.923 = 6.538 < 8.499] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)K264.CB) [> 4.368 = 7.280 < 9.465] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)A263.CB) [> 4.639 = 7.731 < 10.050] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E225.CB, (T0547)A263.CB) [> 4.439 = 7.398 < 9.617] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G199.CA, (T0547)S236.CB) [> 4.087 = 6.811 < 8.854] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)Q237.CB) [> 3.180 = 5.300 < 6.890] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)S236.CB) [> 2.764 = 4.606 < 5.988] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)Q237.CB) [> 3.546 = 5.909 < 7.682] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)D364.CB) [> 4.647 = 7.745 < 10.068] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)Y363.CB) [> 3.178 = 5.297 < 6.886] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)Q237.CB) [> 4.007 = 6.678 < 8.682] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)S236.CB) [> 4.676 = 7.793 < 10.131] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)A276.CB) [> 3.547 = 5.912 < 7.686] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)G274.CA) [> 4.245 = 7.075 < 9.197] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)I200.CB) [> 4.470 = 7.450 < 9.685] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K286.CB, (T0547)N297.CB) [> 3.036 = 5.060 < 6.578] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N284.CB, (T0547)F324.CB) [> 4.483 = 7.471 < 9.713] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N284.CB, (T0547)E294.CB) [> 3.154 = 5.256 < 6.833] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K283.CB, (T0547)Y295.CB) [> 4.610 = 7.683 < 9.988] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)K370.CB) [> 3.897 = 6.495 < 8.444] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)S372.CB) [> 4.048 = 6.746 < 8.770] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)P371.CB) [> 3.688 = 6.146 < 7.990] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)K370.CB) [> 3.515 = 5.858 < 7.615] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)L411.CB) [> 4.715 = 7.858 < 10.215] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)A296.CB) [> 3.732 = 6.220 < 8.086] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)Y295.CB) [> 3.448 = 5.747 < 7.471] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)E294.CB) [> 3.749 = 6.248 < 8.123] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)R293.CB) [> 3.924 = 6.540 < 8.502] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)R288.CB) [> 4.564 = 7.607 < 9.889] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)E320.CB) [> 4.511 = 7.518 < 9.774] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)A296.CB) [> 3.644 = 6.074 < 7.896] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)Y295.CB) [> 3.447 = 5.745 < 7.468] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)V299.CB) [> 4.166 = 6.943 < 9.026] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)A268.CB) [> 4.024 = 6.707 < 8.719] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)A268.CB) [> 4.302 = 7.171 < 9.322] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)N270.CB) [> 4.075 = 6.792 < 8.830] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)L303.CB) [> 4.785 = 7.974 < 10.366] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)V277.CB) [> 3.368 = 5.614 < 7.298] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E240.CB, (T0547)E285.CB) [> 4.410 = 7.349 < 9.554] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E240.CB, (T0547)N284.CB) [> 4.754 = 7.923 < 10.299] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)I481.CB) [> 3.763 = 6.272 < 8.153] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)L49.CB) [> 3.456 = 5.760 < 7.488] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)H384.CB) [> 4.283 = 7.139 < 9.280] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)L313.CB) [> 3.891 = 6.485 < 8.431] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)D398.CB) [> 4.300 = 7.166 < 9.316] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)F232.CB) [> 4.710 = 7.849 < 10.204] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)I169.CB) [> 3.741 = 6.235 < 8.106] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)K414.CB) [> 2.914 = 4.857 < 6.314] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)L418.CB) [> 4.713 = 7.855 < 10.211] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)K415.CB) [> 2.846 = 4.744 < 6.167] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)K414.CB) [> 3.819 = 6.365 < 8.275] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E294.CB, (T0547)E314.CB) [> 4.219 = 7.032 < 9.141] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)R293.CB) [> 4.790 = 7.984 < 10.379] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E213.CB, (T0547)M261.CB) [> 4.603 = 7.672 < 9.973] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)V215.CB) [> 4.525 = 7.542 < 9.804] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)L218.CB) [> 4.728 = 7.880 < 10.244] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)A214.CB) [> 4.649 = 7.748 < 10.073] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)V215.CB) [> 4.479 = 7.466 < 9.705] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)L211.CB) [> 4.041 = 6.736 < 8.756] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)L211.CB) [> 3.585 = 5.976 < 7.768] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)L211.CB) [> 4.299 = 7.165 < 9.315] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L54.CB, (T0547)T413.CB) [> 4.104 = 6.840 < 8.892] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)I550.CB) [> 3.147 = 5.245 < 6.819] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)E548.CB) [> 3.993 = 6.656 < 8.653] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)V547.CB) [> 3.659 = 6.098 < 7.927] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)K414.CB) [> 3.172 = 5.287 < 6.873] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)I412.CB) [> 3.806 = 6.343 < 8.246] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)A307.CB) [> 3.954 = 6.591 < 8.568] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)I306.CB) [> 3.773 = 6.288 < 8.174] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)A247.CB) [> 3.010 = 5.016 < 6.521] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)E314.CB) [> 4.377 = 7.295 < 9.484] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)Q237.CB) [> 4.518 = 7.529 < 9.788] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)I254.CB) [> 3.671 = 6.119 < 7.955] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T209.CB, (T0547)N253.CB) [> 4.392 = 7.321 < 9.517] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)G252.CA) [> 4.446 = 7.411 < 9.634] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)L217.CB) [> 4.411 = 7.352 < 9.557] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)G235.CA) [> 4.527 = 7.544 < 9.807] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)K203.CB) [> 4.542 = 7.570 < 9.841] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)N221.CB) [> 4.659 = 7.765 < 10.095] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L217.CB) [> 3.498 = 5.831 < 7.580] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)Q226.CB) [> 3.971 = 6.618 < 8.603] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)Q226.CB) [> 4.453 = 7.422 < 9.649] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)Q226.CB) [> 3.565 = 5.942 < 7.725] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)E220.CB) [> 4.135 = 6.892 < 8.960] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)L217.CB) [> 4.742 = 7.903 < 10.273] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L217.CB) [> 4.386 = 7.311 < 9.504] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G205.CA) [> 4.629 = 7.715 < 10.029] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)E162.CB) [> 4.173 = 6.956 < 9.042] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)I157.CB) [> 3.533 = 5.888 < 7.654] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N105.CB, (T0547)N124.CB) [> 4.550 = 7.583 < 9.858] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y104.CB, (T0547)N124.CB) [> 3.095 = 5.158 < 6.706] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y104.CB, (T0547)N123.CB) [> 2.766 = 4.611 < 5.994] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)G322.CA) [> 4.767 = 7.946 < 10.329] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N96.CB, (T0547)V325.CB) [> 4.475 = 7.458 < 9.695] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)K310.CB) [> 3.249 = 5.415 < 7.040] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K68.CB, (T0547)G77.CA) [> 2.823 = 4.704 < 6.116] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)L419.CB) [> 4.266 = 7.110 < 9.243] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)D422.CB) [> 3.185 = 5.308 < 6.901] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)G421.CA) [> 4.190 = 6.983 < 9.078] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)D422.CB) [> 4.170 = 6.950 < 9.035] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)L419.CB) [> 3.397 = 5.661 < 7.359] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)T413.CB) [> 3.304 = 5.507 < 7.159] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)D422.CB) [> 3.563 = 5.939 < 7.720] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)L419.CB) [> 4.770 = 7.950 < 10.335] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)D422.CB) [> 3.908 = 6.513 < 8.466] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)Y366.CB) [> 3.844 = 6.407 < 8.330] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)L365.CB) [> 2.989 = 4.981 < 6.475] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)L365.CB) [> 3.556 = 5.927 < 7.705] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)V397.CB) [> 4.433 = 7.389 < 9.605] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S341.CB, (T0547)L399.CB) [> 3.873 = 6.454 < 8.391] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)L365.CB) [> 4.235 = 7.059 < 9.177] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)Y366.CB) [> 3.662 = 6.103 < 7.934] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L365.CB) [> 3.147 = 5.245 < 6.819] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L420.CB) [> 4.151 = 6.918 < 8.994] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)A276.CB) [> 3.546 = 5.911 < 7.684] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)L275.CB) [> 4.229 = 7.048 < 9.163] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)E278.CB) [> 4.498 = 7.496 < 9.745] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)L266.CB) [> 4.676 = 7.793 < 10.130] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)L258.CB) [> 3.506 = 5.844 < 7.597] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)L258.CB) [> 4.144 = 6.907 < 8.979] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)E257.CB) [> 3.821 = 6.368 < 8.278] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K17.CB, (T0547)A30.CB) [> 3.984 = 6.640 < 8.632] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K17.CB, (T0547)K28.CB) [> 4.210 = 7.017 < 9.123] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)K27.CB) [> 4.759 = 7.932 < 10.311] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N11.CB, (T0547)I412.CB) [> 4.281 = 7.135 < 9.276] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)Q281.CB) [> 2.882 = 4.803 < 6.244] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)G395.CA) [> 4.746 = 7.909 < 10.282] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)H384.CB) [> 4.041 = 6.735 < 8.756] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)D383.CB) [> 3.654 = 6.089 < 7.916] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)D434.CB) [> 3.684 = 6.141 < 7.983] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R293.CB, (T0547)R323.CB) [> 4.728 = 7.880 < 10.244] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)R288.CB) [> 4.241 = 7.068 < 9.189] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)T207.CB) [> 4.412 = 7.354 < 9.560] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R173.CB, (T0547)L223.CB) [> 4.723 = 7.871 < 10.232] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)E164.CB) [> 4.545 = 7.575 < 9.847] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)T413.CB) [> 4.635 = 7.726 < 10.043] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)T413.CB) [> 4.101 = 6.835 < 8.886] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)E548.CB) [> 3.529 = 5.881 < 7.645] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)H53.CB) [> 4.336 = 7.226 < 9.394] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)F51.CB) [> 3.107 = 5.178 < 6.731] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)A374.CB) [> 4.730 = 7.883 < 10.248] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)L54.CB) [> 3.835 = 6.392 < 8.310] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)H53.CB) [> 4.294 = 7.157 < 9.304] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)F51.CB) [> 3.244 = 5.406 < 7.028] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K27.CB, (T0547)L54.CB) [> 4.674 = 7.790 < 10.126] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)I32.CB) [> 4.569 = 7.615 < 9.900] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)I478.CB) [> 3.543 = 5.905 < 7.676] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)K95.CB) [> 4.321 = 7.202 < 9.363] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)G92.CA) [> 2.933 = 4.888 < 6.355] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)P91.CB) [> 3.666 = 6.109 < 7.942] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N18.CB, (T0547)K95.CB) [> 2.365 = 3.942 < 5.125] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N18.CB, (T0547)G92.CA) [> 3.610 = 6.017 < 7.823] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K17.CB, (T0547)K95.CB) [> 3.219 = 5.366 < 6.975] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)I412.CB) [> 4.740 = 7.900 < 10.270] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)Q309.CB) [> 4.586 = 7.643 < 9.936] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)S287.CB) [> 4.422 = 7.370 < 9.581] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)T228.CB) [> 4.303 = 7.172 < 9.323] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)T228.CB) [> 3.443 = 5.738 < 7.460] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)T228.CB) [> 3.860 = 6.433 < 8.362] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)D562.CB) [> 4.610 = 7.683 < 9.987] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)P451.CB) [> 3.582 = 5.970 < 7.761] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)M450.CB) [> 3.695 = 6.158 < 8.005] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S403.CB, (T0547)S445.CB) [> 4.608 = 7.680 < 9.984] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q400.CB, (T0547)P426.CB) [> 3.996 = 6.659 < 8.657] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D398.CB, (T0547)F447.CB) [> 3.758 = 6.264 < 8.143] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V397.CB, (T0547)S449.CB) [> 3.928 = 6.547 < 8.512] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V397.CB, (T0547)F447.CB) [> 2.857 = 4.762 < 6.190] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)S449.CB) [> 3.483 = 5.805 < 7.546] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)F447.CB) [> 3.085 = 5.142 < 6.685] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)L446.CB) [> 3.093 = 5.155 < 6.702] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)L419.CB) [> 4.132 = 6.887 < 8.953] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)Q424.CB) [> 4.052 = 6.753 < 8.779] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)G322.CA) [> 4.243 = 7.072 < 9.194] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)S321.CB) [> 3.961 = 6.602 < 8.582] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)S287.CB) [> 3.996 = 6.660 < 8.658] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L418.CB) [> 2.674 = 4.457 < 5.793] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)L418.CB) [> 4.328 = 7.213 < 9.377] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)T413.CB) [> 4.657 = 7.761 < 10.089] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)L441.CB) [> 3.775 = 6.292 < 8.179] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)Y440.CB) [> 3.645 = 6.075 < 7.898] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)G549.CA) [> 3.233 = 5.388 < 7.005] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)E548.CB) [> 4.281 = 7.135 < 9.276] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)L420.CB) [> 4.339 = 7.232 < 9.401] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)P371.CB) [> 3.845 = 6.408 < 8.331] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)N305.CB) [> 3.791 = 6.319 < 8.214] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)K304.CB) [> 3.341 = 5.569 < 7.240] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G143.CA) [> 4.583 = 7.638 < 9.930] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)E546.CB) [> 3.992 = 6.654 < 8.650] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)S381.CB) [> 4.222 = 7.037 < 9.148] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)D452.CB) [> 4.213 = 7.022 < 9.128] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)L394.CB) [> 2.415 = 4.025 < 5.233] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)I169.CB) [> 3.813 = 6.355 < 8.262] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R137.CB, (T0547)E172.CB) [> 4.050 = 6.749 < 8.774] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)K267.CB) [> 4.491 = 7.484 < 9.730] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)I538.CB) [> 4.081 = 6.802 < 8.842] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)K175.CB) [> 4.272 = 7.120 < 9.256] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K286.CB, (T0547)D316.CB) [> 3.547 = 5.911 < 7.685] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)S372.CB) [> 4.407 = 7.345 < 9.548] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)H384.CB) [> 3.266 = 5.444 < 7.077] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)D383.CB) [> 4.293 = 7.156 < 9.302] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)L54.CB) [> 2.943 = 4.904 < 6.376] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)V331.CB) [> 4.334 = 7.223 < 9.390] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)L411.CB) [> 4.521 = 7.535 < 9.795] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N11.CB, (T0547)H53.CB) [> 4.121 = 6.869 < 8.929] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N11.CB, (T0547)K57.CB) [> 3.568 = 5.947 < 7.731] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N11.CB, (T0547)H329.CB) [> 4.448 = 7.413 < 9.638] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E12.CB, (T0547)I23.CB) [> 3.494 = 5.823 < 7.569] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E12.CB, (T0547)K27.CB) [> 2.773 = 4.621 < 6.007] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E12.CB, (T0547)K28.CB) [> 4.666 = 7.777 < 10.111] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E12.CB, (T0547)H53.CB) [> 3.249 = 5.415 < 7.039] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E12.CB, (T0547)E435.CB) [> 4.712 = 7.854 < 10.210] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)L54.CB) [> 2.943 = 4.906 < 6.378] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)K57.CB) [> 4.420 = 7.366 < 9.576] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)H379.CB) [> 4.620 = 7.701 < 10.011] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)G549.CA) [> 3.773 = 6.289 < 8.175] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)S280.CB) [> 4.037 = 6.728 < 8.746] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)Q281.CB) [> 3.447 = 5.746 < 7.469] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)K283.CB) [> 4.465 = 7.441 < 9.674] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)S368.CB) [> 3.168 = 5.281 < 6.865] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)S368.CB) [> 4.622 = 7.703 < 10.014] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)I23.CB) [> 4.107 = 6.845 < 8.899] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)F51.CB) [> 3.216 = 5.360 < 6.968] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)G274.CA) [> 4.685 = 7.809 < 10.152] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)S287.CB) [> 4.785 = 7.975 < 10.368] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)H242.CB) [> 3.797 = 6.329 < 8.227] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)T209.CB) [> 4.089 = 6.815 < 8.859] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G199.CA, (T0547)T209.CB) [> 4.224 = 7.039 < 9.151] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)K367.CB) [> 4.715 = 7.858 < 10.215] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)F324.CB) [> 4.610 = 7.683 < 9.988] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)S381.CB) [> 4.754 = 7.923 < 10.300] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)D383.CB) [> 4.585 = 7.641 < 9.934] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)L394.CB) [> 4.256 = 7.093 < 9.221] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)G395.CA) [> 4.571 = 7.619 < 9.904] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)S403.CB) [> 4.725 = 7.874 < 10.237] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)L411.CB) [> 4.360 = 7.266 < 9.446] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)V584.CB) [> 3.560 = 5.934 < 7.714] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)L583.CB) [> 3.228 = 5.380 < 6.993] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)L292.CB) [> 4.725 = 7.876 < 10.238] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)E308.CB) [> 4.449 = 7.415 < 9.640] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)H329.CB) [> 4.487 = 7.479 < 9.723] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)L375.CB) [> 2.837 = 4.728 < 6.146] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)D33.CB) [> 4.706 = 7.844 < 10.197] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)L54.CB) [> 3.464 = 5.773 < 7.505] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)I540.CB) [> 4.517 = 7.528 < 9.787] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)D33.CB) [> 4.378 = 7.297 < 9.486] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)V436.CB) [> 3.981 = 6.634 < 8.624] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)N373.CB) [> 4.080 = 6.800 < 8.840] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)N373.CB) [> 4.668 = 7.779 < 10.113] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)T534.CB) [> 4.274 = 7.123 < 9.260] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)D434.CB) [> 4.648 = 7.746 < 10.070] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)H242.CB) [> 4.630 = 7.717 < 10.032] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K27.CB, (T0547)L441.CB) [> 4.781 = 7.969 < 10.360] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)E285.CB) [> 4.779 = 7.965 < 10.355] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)E240.CB) [> 4.755 = 7.924 < 10.302] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)T413.CB) [> 3.813 = 6.355 < 8.262] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)T291.CB) [> 4.523 = 7.538 < 9.799] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)Q226.CB) [> 4.758 = 7.930 < 10.309] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)L408.CB) [> 3.213 = 5.356 < 6.962] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)H410.CB) [> 4.371 = 7.285 < 9.470] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)F392.CB) [> 3.352 = 5.587 < 7.263] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)A476.CB) [> 4.430 = 7.384 < 9.599] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)T413.CB) [> 4.369 = 7.282 < 9.466] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)L420.CB) [> 4.696 = 7.826 < 10.174] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)I417.CB) [> 4.783 = 7.972 < 10.364] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)K415.CB) [> 4.435 = 7.392 < 9.610] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)S368.CB) [> 4.265 = 7.108 < 9.240] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)K423.CB) [> 4.091 = 6.818 < 8.864] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)Y377.CB) [> 3.285 = 5.475 < 7.118] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)Y377.CB) [> 4.268 = 7.113 < 9.247] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)L430.CB) [> 4.734 = 7.890 < 10.257] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E285.CB, (T0547)I412.CB) [> 3.691 = 6.151 < 7.996] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E285.CB, (T0547)K370.CB) [> 4.660 = 7.767 < 10.097] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q281.CB, (T0547)I412.CB) [> 3.541 = 5.902 < 7.672] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q281.CB, (T0547)L411.CB) [> 4.666 = 7.777 < 10.109] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q281.CB, (T0547)Y290.CB) [> 3.563 = 5.938 < 7.719] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)N328.CB) [> 4.002 = 6.670 < 8.671] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)F227.CB) [> 4.735 = 7.892 < 10.260] w=0.027 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)P176.CB) [> 3.835 = 6.392 < 8.310] w=0.017 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R137.CB, (T0547)N161.CB) [> 4.471 = 7.452 < 9.688] w=0.017 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)A127.CB) [> 3.416 = 5.693 < 7.401] w=0.016 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)L292.CB) [> 4.567 = 7.611 < 9.895] w=0.016 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E148.CB, (T0547)A170.CB) [> 4.461 = 7.436 < 9.666] w=0.016 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E172.CB, (T0547)L223.CB) [> 3.837 = 6.395 < 8.314] w=0.016 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D298.CB, (T0547)K311.CB) [> 3.637 = 6.062 < 7.880] w=0.015 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)D312.CB) [> 4.158 = 6.930 < 9.009] w=0.015 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)S236.CB) [> 2.012 = 3.354 < 4.360] w=0.015 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)S236.CB) [> 3.983 = 6.639 < 8.630] w=0.015 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)D312.CB) [> 4.423 = 7.371 < 9.583] w=0.015 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)P315.CB) [> 3.684 = 6.140 < 7.982] w=0.015 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)I169.CB) [> 4.611 = 7.685 < 9.991] w=0.015 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)I166.CB) [> 4.345 = 7.241 < 9.414] w=0.015 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E172.CB, (T0547)L224.CB) [> 3.792 = 6.320 < 8.216] w=0.015 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)N201.CB) [> 4.287 = 7.145 < 9.289] w=0.015 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S202.CB, (T0547)S236.CB) [> 3.147 = 5.246 < 6.819] w=0.015 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)D401.CB) [> 4.684 = 7.806 < 10.148] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)I478.CB) [> 3.441 = 5.735 < 7.456] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)E470.CB) [> 3.417 = 5.696 < 7.404] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)F444.CB) [> 4.145 = 6.909 < 8.982] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)D401.CB) [> 4.332 = 7.220 < 9.386] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)E470.CB) [> 4.669 = 7.782 < 10.117] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S341.CB, (T0547)V502.CB) [> 4.035 = 6.725 < 8.742] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)E505.CB) [> 3.483 = 5.805 < 7.546] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)E505.CB) [> 4.069 = 6.782 < 8.817] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)E505.CB) [> 3.891 = 6.485 < 8.430] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)A476.CB) [> 4.741 = 7.902 < 10.273] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)Q448.CB) [> 3.573 = 5.955 < 7.741] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)Y440.CB) [> 4.367 = 7.278 < 9.461] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)E314.CB) [> 3.501 = 5.835 < 7.585] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)E314.CB) [> 4.252 = 7.087 < 9.213] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)F460.CB) [> 3.986 = 6.643 < 8.636] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)E457.CB) [> 2.894 = 4.824 < 6.271] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)M450.CB) [> 4.800 = 8.000 < 10.400] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)E457.CB) [> 2.957 = 4.928 < 6.406] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)E457.CB) [> 3.813 = 6.356 < 8.262] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)E471.CB) [> 3.924 = 6.541 < 8.503] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)E470.CB) [> 4.472 = 7.454 < 9.690] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)D401.CB) [> 3.401 = 5.669 < 7.370] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)E470.CB) [> 4.233 = 7.055 < 9.171] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)D401.CB) [> 4.672 = 7.786 < 10.122] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)I478.CB) [> 4.055 = 6.758 < 8.785] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)E471.CB) [> 2.886 = 4.810 < 6.253] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)E470.CB) [> 3.045 = 5.076 < 6.598] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G42.CA, (T0547)G549.CA) [> 4.201 = 7.002 < 9.103] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G42.CA, (T0547)L441.CB) [> 4.333 = 7.222 < 9.388] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)D566.CB) [> 4.525 = 7.542 < 9.805] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)E535.CB) [> 4.779 = 7.965 < 10.354] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)W454.CB) [> 4.368 = 7.280 < 9.465] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)F453.CB) [> 4.235 = 7.059 < 9.176] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)F453.CB) [> 3.174 = 5.291 < 6.878] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)D452.CB) [> 4.346 = 7.243 < 9.416] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)G455.CA) [> 4.099 = 6.831 < 8.880] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)W454.CB) [> 2.886 = 4.810 < 6.253] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)F453.CB) [> 4.204 = 7.007 < 9.109] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)L313.CB) [> 4.199 = 6.998 < 9.098] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)L163.CB) [> 4.639 = 7.732 < 10.052] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N96.CB, (T0547)N541.CB) [> 4.409 = 7.348 < 9.552] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N96.CB, (T0547)L446.CB) [> 4.488 = 7.480 < 9.724] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)S539.CB) [> 4.273 = 7.122 < 9.259] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)I537.CB) [> 3.029 = 5.048 < 6.563] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)F444.CB) [> 4.244 = 7.073 < 9.195] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)V442.CB) [> 3.019 = 5.032 < 6.542] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)V442.CB) [> 4.480 = 7.467 < 9.707] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)K283.CB) [> 4.712 = 7.853 < 10.209] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)L313.CB) [> 3.824 = 6.373 < 8.285] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K76.CB, (T0547)E314.CB) [> 4.798 = 7.996 < 10.395] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)K310.CB) [> 4.253 = 7.088 < 9.215] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)S287.CB) [> 4.751 = 7.918 < 10.294] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)K283.CB) [> 4.253 = 7.088 < 9.215] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)G544.CA) [> 3.655 = 6.092 < 7.919] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)V547.CB) [> 3.629 = 6.048 < 7.862] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)G544.CA) [> 4.481 = 7.469 < 9.710] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)V547.CB) [> 4.644 = 7.741 < 10.063] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)W479.CB) [> 4.484 = 7.474 < 9.716] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)M450.CB) [> 3.201 = 5.335 < 6.935] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)S449.CB) [> 4.106 = 6.844 < 8.897] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)M450.CB) [> 3.110 = 5.183 < 6.738] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)V442.CB) [> 4.298 = 7.163 < 9.312] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)P472.CB) [> 3.013 = 5.022 < 6.528] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)E471.CB) [> 3.792 = 6.320 < 8.215] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)E470.CB) [> 4.332 = 7.220 < 9.386] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)P472.CB) [> 3.944 = 6.573 < 8.545] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)E471.CB) [> 4.079 = 6.799 < 8.838] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)I538.CB) [> 3.939 = 6.565 < 8.534] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)P472.CB) [> 3.957 = 6.596 < 8.574] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)S475.CB) [> 4.444 = 7.407 < 9.629] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)S475.CB) [> 3.600 = 6.001 < 7.801] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)A536.CB) [> 3.352 = 5.587 < 7.263] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)E535.CB) [> 4.739 = 7.898 < 10.268] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)T534.CB) [> 3.749 = 6.248 < 8.122] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)D503.CB) [> 3.989 = 6.648 < 8.642] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)T482.CB) [> 4.434 = 7.390 < 9.608] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)I481.CB) [> 3.993 = 6.655 < 8.651] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)W479.CB) [> 4.324 = 7.207 < 9.370] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)M450.CB) [> 4.055 = 6.758 < 8.786] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)S449.CB) [> 4.388 = 7.314 < 9.508] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E435.CB, (T0547)E542.CB) [> 2.340 = 3.901 < 5.071] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E435.CB, (T0547)N541.CB) [> 4.716 = 7.860 < 10.217] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E435.CB, (T0547)I540.CB) [> 3.893 = 6.488 < 8.435] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E435.CB, (T0547)I538.CB) [> 4.586 = 7.644 < 9.937] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E435.CB, (T0547)I537.CB) [> 2.333 = 3.888 < 5.054] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E435.CB, (T0547)A536.CB) [> 4.017 = 6.695 < 8.704] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D434.CB, (T0547)I537.CB) [> 4.011 = 6.685 < 8.691] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D434.CB, (T0547)A536.CB) [> 3.184 = 5.307 < 6.899] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D434.CB, (T0547)W479.CB) [> 3.320 = 5.533 < 7.193] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)D503.CB) [> 3.989 = 6.649 < 8.644] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)D503.CB) [> 4.120 = 6.867 < 8.927] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)D501.CB) [> 3.660 = 6.099 < 7.929] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R402.CB, (T0547)E471.CB) [> 3.354 = 5.590 < 7.267] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R402.CB, (T0547)E470.CB) [> 2.457 = 4.095 < 5.324] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D401.CB, (T0547)E470.CB) [> 4.651 = 7.752 < 10.077] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)I417.CB) [> 4.039 = 6.732 < 8.751] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)K415.CB) [> 4.553 = 7.588 < 9.865] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)K414.CB) [> 4.660 = 7.766 < 10.096] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)L394.CB) [> 4.639 = 7.732 < 10.051] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)L419.CB) [> 4.269 = 7.115 < 9.249] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)E435.CB) [> 2.869 = 4.781 < 6.215] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)I432.CB) [> 4.380 = 7.299 < 9.489] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)L419.CB) [> 4.638 = 7.730 < 10.049] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)V436.CB) [> 3.946 = 6.576 < 8.549] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L456.CB) [> 4.494 = 7.490 < 9.738] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)R474.CB) [> 2.882 = 4.803 < 6.244] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)D428.CB) [> 3.546 = 5.911 < 7.684] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)T473.CB) [> 2.824 = 4.707 < 6.119] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)P472.CB) [> 3.796 = 6.327 < 8.225] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)A476.CB) [> 3.660 = 6.099 < 7.929] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)S475.CB) [> 4.177 = 6.962 < 9.051] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L419.CB) [> 4.268 = 7.114 < 9.248] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)F530.CB) [> 4.033 = 6.721 < 8.737] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)I540.CB) [> 4.180 = 6.966 < 9.056] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)S539.CB) [> 4.100 = 6.834 < 8.884] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)F530.CB) [> 4.740 = 7.901 < 10.271] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q458.CB, (T0547)N541.CB) [> 4.777 = 7.962 < 10.350] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S445.CB, (T0547)I540.CB) [> 3.793 = 6.321 < 8.218] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S445.CB, (T0547)Q458.CB) [> 3.648 = 6.080 < 7.904] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S445.CB, (T0547)E457.CB) [> 3.115 = 5.191 < 6.749] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)F460.CB) [> 2.966 = 4.943 < 6.426] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)N284.CB) [> 2.744 = 4.574 < 5.946] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)R288.CB) [> 4.699 = 7.832 < 10.181] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K76.CB, (T0547)K286.CB) [> 3.629 = 6.048 < 7.862] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)N284.CB) [> 3.096 = 5.160 < 6.708] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)E314.CB) [> 3.425 = 5.709 < 7.422] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K57.CB, (T0547)E314.CB) [> 3.090 = 5.150 < 6.696] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)L446.CB) [> 4.674 = 7.790 < 10.127] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L54.CB, (T0547)E314.CB) [> 2.382 = 3.970 < 5.161] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)F447.CB) [> 3.981 = 6.635 < 8.626] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)E314.CB) [> 4.647 = 7.745 < 10.069] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)D452.CB) [> 4.782 = 7.970 < 10.361] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)P451.CB) [> 4.043 = 6.739 < 8.761] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)L446.CB) [> 4.651 = 7.751 < 10.077] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)E314.CB) [> 4.765 = 7.942 < 10.325] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)P461.CB) [> 3.689 = 6.148 < 7.993] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)T531.CB) [> 3.059 = 5.098 < 6.627] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)F530.CB) [> 4.207 = 7.012 < 9.115] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)I462.CB) [> 3.691 = 6.152 < 7.998] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)P461.CB) [> 4.018 = 6.697 < 8.706] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q437.CB, (T0547)A536.CB) [> 4.636 = 7.727 < 10.045] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q437.CB, (T0547)T531.CB) [> 3.466 = 5.777 < 7.510] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q437.CB, (T0547)I462.CB) [> 3.727 = 6.212 < 8.076] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)A553.CB) [> 3.428 = 5.713 < 7.427] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)I462.CB) [> 3.734 = 6.224 < 8.091] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E435.CB, (T0547)A553.CB) [> 4.618 = 7.696 < 10.005] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D434.CB, (T0547)A553.CB) [> 4.495 = 7.492 < 9.740] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)Q554.CB) [> 4.744 = 7.907 < 10.280] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)Q437.CB) [> 4.197 = 6.995 < 9.094] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)Q437.CB) [> 3.523 = 5.871 < 7.633] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)V436.CB) [> 4.287 = 7.145 < 9.289] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)E457.CB) [> 4.655 = 7.758 < 10.086] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)F460.CB) [> 4.576 = 7.627 < 9.916] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)P461.CB) [> 4.662 = 7.770 < 10.101] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)F460.CB) [> 2.954 = 4.923 < 6.400] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)N459.CB) [> 4.359 = 7.265 < 9.445] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)P461.CB) [> 3.878 = 6.463 < 8.403] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)F460.CB) [> 4.340 = 7.234 < 9.404] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)N459.CB) [> 3.263 = 5.439 < 7.071] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)G549.CA) [> 4.756 = 7.927 < 10.306] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)I462.CB) [> 2.612 = 4.353 < 5.659] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)P461.CB) [> 4.219 = 7.032 < 9.141] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)L563.CB) [> 4.581 = 7.636 < 9.926] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)I462.CB) [> 4.067 = 6.778 < 8.811] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)M450.CB) [> 2.704 = 4.507 < 5.859] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)S449.CB) [> 4.448 = 7.414 < 9.638] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)Q448.CB) [> 3.406 = 5.676 < 7.379] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)L430.CB) [> 4.751 = 7.918 < 10.293] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R402.CB, (T0547)P426.CB) [> 4.521 = 7.536 < 9.796] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)I388.CB) [> 3.323 = 5.538 < 7.200] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)I388.CB) [> 3.788 = 6.313 < 8.207] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)L375.CB) [> 4.389 = 7.314 < 9.509] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)A374.CB) [> 3.323 = 5.539 < 7.201] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)V436.CB) [> 4.740 = 7.900 < 10.270] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)D398.CB) [> 3.453 = 5.754 < 7.481] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)L446.CB) [> 2.703 = 4.505 < 5.856] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)S445.CB) [> 3.329 = 5.549 < 7.214] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)R402.CB) [> 4.788 = 7.980 < 10.374] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)L375.CB) [> 4.800 = 8.000 < 10.400] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)S387.CB) [> 3.504 = 5.840 < 7.591] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)E386.CB) [> 4.781 = 7.968 < 10.358] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)D452.CB) [> 4.599 = 7.665 < 9.964] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)E457.CB) [> 4.799 = 7.998 < 10.397] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)G455.CA) [> 2.653 = 4.422 < 5.749] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)W454.CB) [> 4.028 = 6.714 < 8.728] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)F453.CB) [> 3.605 = 6.008 < 7.810] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)E457.CB) [> 3.200 = 5.333 < 6.933] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)L456.CB) [> 4.248 = 7.079 < 9.203] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)E457.CB) [> 4.533 = 7.556 < 9.822] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)L456.CB) [> 2.764 = 4.607 < 5.988] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)E546.CB) [> 4.013 = 6.688 < 8.695] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)T559.CB) [> 4.155 = 6.925 < 9.002] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q424.CB, (T0547)D564.CB) [> 4.099 = 6.831 < 8.881] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)F447.CB) [> 3.902 = 6.503 < 8.454] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)L563.CB) [> 3.960 = 6.601 < 8.581] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)V547.CB) [> 4.772 = 7.954 < 10.340] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)Q433.CB) [> 3.956 = 6.593 < 8.571] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)P451.CB) [> 4.744 = 7.907 < 10.279] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)S280.CB) [> 4.596 = 7.659 < 9.957] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)I254.CB) [> 4.643 = 7.739 < 10.060] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)A214.CB) [> 4.537 = 7.561 < 9.829] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)G205.CA) [> 2.280 = 3.800 < 4.940] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)E225.CB) [> 4.232 = 7.054 < 9.170] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)G192.CA) [> 4.629 = 7.716 < 10.031] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)K171.CB) [> 3.517 = 5.861 < 7.619] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L223.CB) [> 4.730 = 7.883 < 10.248] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)K171.CB) [> 2.725 = 4.542 < 5.905] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N141.CB, (T0547)L224.CB) [> 4.691 = 7.819 < 10.164] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N141.CB, (T0547)K171.CB) [> 2.768 = 4.613 < 5.997] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)L223.CB) [> 4.730 = 7.883 < 10.248] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)D452.CB) [> 4.221 = 7.034 < 9.145] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)W454.CB) [> 4.690 = 7.816 < 10.161] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)E438.CB) [> 4.304 = 7.174 < 9.326] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)D434.CB) [> 4.183 = 6.972 < 9.064] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)E285.CB) [> 4.602 = 7.669 < 9.970] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)N355.CB) [> 3.005 = 5.009 < 6.512] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)Q354.CB) [> 4.128 = 6.880 < 8.944] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S341.CB, (T0547)N355.CB) [> 4.037 = 6.729 < 8.747] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S341.CB, (T0547)Q354.CB) [> 3.290 = 5.483 < 7.127] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E314.CB, (T0547)H329.CB) [> 4.161 = 6.935 < 9.015] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E285.CB, (T0547)F318.CB) [> 4.412 = 7.353 < 9.559] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N284.CB, (T0547)I319.CB) [> 3.581 = 5.969 < 7.759] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N284.CB, (T0547)F318.CB) [> 4.567 = 7.612 < 9.895] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K283.CB, (T0547)L557.CB) [> 4.741 = 7.902 < 10.272] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)N284.CB) [> 4.389 = 7.316 < 9.510] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)K283.CB) [> 3.175 = 5.292 < 6.879] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)K286.CB) [> 3.818 = 6.363 < 8.272] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)E285.CB) [> 4.160 = 6.932 < 9.012] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)E285.CB) [> 2.694 = 4.490 < 5.837] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)K283.CB) [> 3.947 = 6.578 < 8.552] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)S280.CB) [> 4.303 = 7.172 < 9.323] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)F282.CB) [> 4.794 = 7.990 < 10.387] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)S280.CB) [> 4.659 = 7.765 < 10.095] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R293.CB, (T0547)K415.CB) [> 3.346 = 5.577 < 7.250] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R293.CB, (T0547)K414.CB) [> 3.412 = 5.687 < 7.394] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R293.CB, (T0547)S372.CB) [> 3.634 = 6.057 < 7.874] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R293.CB, (T0547)P371.CB) [> 2.600 = 4.333 < 5.633] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)K415.CB) [> 4.745 = 7.909 < 10.281] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)K414.CB) [> 2.995 = 4.991 < 6.489] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)T413.CB) [> 4.075 = 6.792 < 8.829] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I412.CB) [> 3.502 = 5.837 < 7.589] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)S372.CB) [> 3.045 = 5.074 < 6.597] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)P371.CB) [> 4.517 = 7.528 < 9.786] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)N328.CB) [> 4.470 = 7.450 < 9.684] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)L419.CB) [> 4.655 = 7.758 < 10.086] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)I417.CB) [> 4.799 = 7.998 < 10.398] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)A416.CB) [> 2.496 = 4.160 < 5.408] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)K415.CB) [> 3.273 = 5.455 < 7.091] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)K414.CB) [> 3.696 = 6.160 < 8.008] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)T413.CB) [> 3.256 = 5.427 < 7.055] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)L394.CB) [> 4.631 = 7.718 < 10.033] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)I388.CB) [> 4.551 = 7.585 < 9.861] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)I388.CB) [> 3.805 = 6.341 < 8.244] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)L389.CB) [> 4.115 = 6.859 < 8.917] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)Y377.CB) [> 4.012 = 6.686 < 8.692] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L419.CB) [> 4.553 = 7.589 < 9.865] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)P371.CB) [> 4.794 = 7.989 < 10.386] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L420.CB) [> 4.750 = 7.917 < 10.292] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L419.CB) [> 4.750 = 7.917 < 10.292] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)I412.CB) [> 4.591 = 7.652 < 9.948] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L313.CB, (T0547)N328.CB) [> 3.986 = 6.643 < 8.635] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K310.CB, (T0547)I319.CB) [> 3.352 = 5.586 < 7.262] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)I319.CB) [> 4.370 = 7.284 < 9.469] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)S372.CB) [> 3.576 = 5.960 < 7.748] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)N328.CB) [> 4.139 = 6.898 < 8.967] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E294.CB, (T0547)A416.CB) [> 4.788 = 7.980 < 10.374] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E294.CB, (T0547)D312.CB) [> 2.863 = 4.772 < 6.204] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)V277.CB) [> 4.746 = 7.910 < 10.283] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)I306.CB) [> 4.461 = 7.435 < 9.665] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)Y279.CB) [> 4.656 = 7.760 < 10.088] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)E308.CB) [> 3.550 = 5.917 < 7.692] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)K283.CB) [> 3.587 = 5.978 < 7.772] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)F282.CB) [> 4.283 = 7.138 < 9.280] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)Y279.CB) [> 3.035 = 5.059 < 6.577] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)D312.CB) [> 4.717 = 7.861 < 10.219] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)K311.CB) [> 4.607 = 7.678 < 9.981] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)Y279.CB) [> 2.256 = 3.761 < 4.889] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)K311.CB) [> 4.223 = 7.038 < 9.149] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)Y279.CB) [> 3.824 = 6.374 < 8.286] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E240.CB, (T0547)K311.CB) [> 4.364 = 7.273 < 9.455] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)E376.CB) [> 3.842 = 6.404 < 8.325] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)L375.CB) [> 4.538 = 7.564 < 9.833] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)K311.CB) [> 3.827 = 6.378 < 8.291] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)K310.CB) [> 3.516 = 5.859 < 7.617] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)I412.CB) [> 4.413 = 7.354 < 9.560] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)P371.CB) [> 4.700 = 7.833 < 10.183] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)A330.CB) [> 4.214 = 7.024 < 9.131] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)N328.CB) [> 3.936 = 6.560 < 8.529] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)D312.CB) [> 2.599 = 4.332 < 5.631] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)K311.CB) [> 4.675 = 7.791 < 10.128] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N284.CB, (T0547)K311.CB) [> 4.714 = 7.857 < 10.214] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N284.CB, (T0547)K310.CB) [> 3.362 = 5.603 < 7.284] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)I319.CB) [> 4.496 = 7.494 < 9.742] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)A307.CB) [> 4.734 = 7.890 < 10.257] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)I306.CB) [> 3.003 = 5.005 < 6.506] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T256.CB, (T0547)I269.CB) [> 4.555 = 7.591 < 9.869] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)L313.CB) [> 4.160 = 6.934 < 9.014] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)D312.CB) [> 4.456 = 7.427 < 9.655] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N249.CB, (T0547)E308.CB) [> 4.308 = 7.180 < 9.335] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N249.CB, (T0547)A307.CB) [> 4.271 = 7.118 < 9.253] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)E308.CB) [> 4.212 = 7.020 < 9.125] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)S287.CB) [> 4.245 = 7.075 < 9.197] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)Y491.CB) [> 4.092 = 6.821 < 8.867] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)S492.CB) [> 4.144 = 6.907 < 8.979] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)Y491.CB) [> 3.360 = 5.600 < 7.280] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)I481.CB) [> 4.418 = 7.364 < 9.573] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)Y440.CB) [> 2.945 = 4.909 < 6.382] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)I550.CB) [> 4.092 = 6.820 < 8.866] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)I550.CB) [> 4.185 = 6.975 < 9.067] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)P533.CB) [> 3.840 = 6.401 < 8.321] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)L441.CB) [> 4.444 = 7.406 < 9.628] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)P533.CB) [> 4.585 = 7.642 < 9.935] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)R402.CB) [> 4.657 = 7.762 < 10.091] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)H410.CB) [> 4.502 = 7.503 < 9.754] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E386.CB, (T0547)D398.CB) [> 3.035 = 5.059 < 6.576] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E138.CB, (T0547)M149.CB) [> 3.580 = 5.966 < 7.756] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E138.CB, (T0547)E148.CB) [> 3.441 = 5.734 < 7.455] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R137.CB, (T0547)P176.CB) [> 4.603 = 7.672 < 9.973] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R137.CB, (T0547)F174.CB) [> 2.922 = 4.871 < 6.332] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R137.CB, (T0547)E148.CB) [> 3.643 = 6.072 < 7.894] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)P178.CB) [> 4.357 = 7.262 < 9.441] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)A170.CB) [> 4.650 = 7.750 < 10.076] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)D168.CB) [> 4.603 = 7.672 < 9.974] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)E172.CB) [> 4.790 = 7.983 < 10.378] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)L139.CB) [> 4.142 = 6.903 < 8.974] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)E138.CB) [> 3.896 = 6.493 < 8.440] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)V277.CB) [> 4.788 = 7.980 < 10.374] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L54.CB, (T0547)N541.CB) [> 4.034 = 6.723 < 8.740] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I550.CB) [> 4.078 = 6.796 < 8.835] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)E552.CB) [> 3.823 = 6.372 < 8.283] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)I550.CB) [> 3.336 = 5.560 < 7.228] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)I550.CB) [> 3.968 = 6.614 < 8.598] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)L375.CB) [> 4.507 = 7.511 < 9.764] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)F392.CB) [> 3.086 = 5.143 < 6.686] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)L375.CB) [> 4.392 = 7.321 < 9.517] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)D364.CB) [> 2.667 = 4.444 < 5.777] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)Y363.CB) [> 3.054 = 5.091 < 6.618] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)Y366.CB) [> 3.461 = 5.768 < 7.499] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)I388.CB) [> 3.664 = 6.107 < 7.940] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)L365.CB) [> 4.565 = 7.608 < 9.891] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)L411.CB) [> 4.666 = 7.776 < 10.109] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)I388.CB) [> 3.263 = 5.438 < 7.069] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)D401.CB) [> 4.180 = 6.967 < 9.057] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)G395.CA) [> 4.066 = 6.776 < 8.809] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)L394.CB) [> 4.734 = 7.889 < 10.256] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)D393.CB) [> 2.484 = 4.139 < 5.381] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)F392.CB) [> 4.042 = 6.736 < 8.757] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E343.CB, (T0547)F392.CB) [> 4.507 = 7.512 < 9.765] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)H410.CB) [> 3.474 = 5.790 < 7.527] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)L408.CB) [> 4.615 = 7.691 < 9.999] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)L391.CB) [> 3.420 = 5.700 < 7.410] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)T413.CB) [> 4.341 = 7.234 < 9.405] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)S387.CB) [> 4.313 = 7.188 < 9.345] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)E386.CB) [> 2.923 = 4.871 < 6.332] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N373.CB, (T0547)T413.CB) [> 3.783 = 6.305 < 8.196] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N373.CB, (T0547)L411.CB) [> 4.573 = 7.621 < 9.907] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)I412.CB) [> 3.988 = 6.646 < 8.640] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)L411.CB) [> 3.981 = 6.636 < 8.626] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)H410.CB) [> 3.922 = 6.537 < 8.498] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)L389.CB) [> 4.398 = 7.330 < 9.529] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)P533.CB) [> 4.445 = 7.409 < 9.632] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)L389.CB) [> 4.768 = 7.947 < 10.331] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)S387.CB) [> 4.783 = 7.971 < 10.362] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)I417.CB) [> 4.718 = 7.864 < 10.223] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)K414.CB) [> 2.849 = 4.749 < 6.174] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)L418.CB) [> 4.294 = 7.156 < 9.303] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)D501.CB) [> 2.835 = 4.726 < 6.143] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)D503.CB) [> 3.198 = 5.331 < 6.930] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)D501.CB) [> 3.612 = 6.020 < 7.826] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)I551.CB) [> 3.944 = 6.574 < 8.546] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)I550.CB) [> 3.566 = 5.944 < 7.727] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)I537.CB) [> 3.450 = 5.750 < 7.475] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)I537.CB) [> 4.255 = 7.092 < 9.220] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N459.CB, (T0547)Q554.CB) [> 3.725 = 6.208 < 8.071] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N459.CB, (T0547)A553.CB) [> 4.256 = 7.094 < 9.222] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q458.CB, (T0547)Q554.CB) [> 4.008 = 6.680 < 8.684] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L446.CB, (T0547)V547.CB) [> 2.387 = 3.978 < 5.172] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L446.CB, (T0547)Y545.CB) [> 4.113 = 6.855 < 8.911] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L446.CB, (T0547)G544.CA) [> 3.931 = 6.551 < 8.516] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L446.CB, (T0547)K543.CB) [> 2.884 = 4.807 < 6.250] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S445.CB, (T0547)V547.CB) [> 3.696 = 6.160 < 8.007] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S445.CB, (T0547)E546.CB) [> 3.764 = 6.274 < 8.156] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S445.CB, (T0547)G544.CA) [> 3.123 = 5.206 < 6.767] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)E546.CB) [> 4.340 = 7.234 < 9.404] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)S490.CB) [> 4.575 = 7.625 < 9.913] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)Y377.CB) [> 4.345 = 7.242 < 9.415] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D41.CB, (T0547)L408.CB) [> 3.930 = 6.551 < 8.516] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)D558.CB) [> 3.147 = 5.245 < 6.818] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E546.CB, (T0547)S555.CB) [> 3.821 = 6.368 < 8.279] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)T559.CB) [> 4.792 = 7.986 < 10.382] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)E552.CB) [> 4.745 = 7.908 < 10.281] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)I551.CB) [> 2.910 = 4.849 < 6.304] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)I550.CB) [> 4.270 = 7.116 < 9.251] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E505.CB, (T0547)P533.CB) [> 2.653 = 4.422 < 5.748] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V504.CB, (T0547)P533.CB) [> 3.240 = 5.401 < 7.021] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)E542.CB) [> 4.594 = 7.656 < 9.953] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)T482.CB) [> 3.210 = 5.351 < 6.956] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)S449.CB) [> 3.315 = 5.525 < 7.182] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)Q448.CB) [> 2.891 = 4.818 < 6.263] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)G544.CA) [> 3.561 = 5.935 < 7.715] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)K543.CB) [> 1.453 = 2.421 < 3.148] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)E542.CB) [> 2.462 = 4.103 < 5.334] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)M450.CB) [> 3.958 = 6.597 < 8.577] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)S449.CB) [> 2.637 = 4.394 < 5.712] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)Q448.CB) [> 4.715 = 7.858 < 10.216] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q437.CB, (T0547)K543.CB) [> 4.759 = 7.932 < 10.312] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q437.CB, (T0547)E542.CB) [> 4.516 = 7.527 < 9.785] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q437.CB, (T0547)T534.CB) [> 3.870 = 6.450 < 8.385] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q437.CB, (T0547)D503.CB) [> 3.927 = 6.545 < 8.509] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q437.CB, (T0547)T482.CB) [> 4.383 = 7.304 < 9.495] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)E542.CB) [> 4.534 = 7.556 < 9.823] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)I537.CB) [> 4.760 = 7.934 < 10.314] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S445.CB, (T0547)K543.CB) [> 4.734 = 7.890 < 10.257] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)I550.CB) [> 4.240 = 7.067 < 9.187] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)G549.CA) [> 3.602 = 6.004 < 7.805] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)E546.CB) [> 4.165 = 6.941 < 9.023] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)E470.CB) [> 3.336 = 5.560 < 7.228] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)E546.CB) [> 3.661 = 6.102 < 7.932] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)S477.CB) [> 3.576 = 5.961 < 7.749] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)P472.CB) [> 3.893 = 6.488 < 8.434] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)I550.CB) [> 2.774 = 4.624 < 6.011] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)Y545.CB) [> 3.722 = 6.203 < 8.064] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)F453.CB) [> 4.738 = 7.897 < 10.266] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)M450.CB) [> 3.313 = 5.522 < 7.178] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)S449.CB) [> 4.367 = 7.278 < 9.461] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)Y545.CB) [> 4.110 = 6.849 < 8.904] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)K543.CB) [> 4.605 = 7.676 < 9.978] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I140.CB) [> 4.243 = 7.072 < 9.194] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I142.CB) [> 4.473 = 7.455 < 9.691] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)A146.CB) [> 4.733 = 7.888 < 10.254] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)T154.CB) [> 4.476 = 7.460 < 9.698] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)I153.CB) [> 4.129 = 6.882 < 8.947] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N124.CB, (T0547)H151.CB) [> 4.771 = 7.952 < 10.338] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)G143.CA) [> 3.731 = 6.218 < 8.084] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E115.CB, (T0547)I551.CB) [> 3.404 = 5.673 < 7.374] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E115.CB, (T0547)A127.CB) [> 4.783 = 7.972 < 10.363] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)A553.CB) [> 3.166 = 5.277 < 6.860] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)A296.CB) [> 4.018 = 6.697 < 8.706] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)L362.CB) [> 4.755 = 7.926 < 10.303] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)K310.CB) [> 3.319 = 5.531 < 7.190] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)I306.CB) [> 4.794 = 7.989 < 10.386] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)P371.CB) [> 4.756 = 7.926 < 10.304] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)I254.CB) [> 4.669 = 7.782 < 10.117] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)Y255.CB) [> 4.713 = 7.856 < 10.212] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)Y255.CB) [> 4.578 = 7.630 < 9.918] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)N249.CB) [> 4.707 = 7.845 < 10.198] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)I254.CB) [> 4.340 = 7.234 < 9.404] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)L218.CB) [> 4.651 = 7.752 < 10.078] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)I153.CB) [> 3.482 = 5.803 < 7.544] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)I166.CB) [> 3.907 = 6.512 < 8.465] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)A165.CB) [> 3.802 = 6.337 < 8.238] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)I180.CB) [> 4.787 = 7.979 < 10.372] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G192.CA) [> 4.730 = 7.883 < 10.248] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)V191.CB) [> 3.208 = 5.346 < 6.950] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)S492.CB) [> 3.537 = 5.896 < 7.664] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)I551.CB) [> 4.330 = 7.217 < 9.383] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)G549.CA) [> 4.488 = 7.480 < 9.724] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)S492.CB) [> 4.391 = 7.319 < 9.514] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)I550.CB) [> 3.684 = 6.140 < 7.982] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)E552.CB) [> 4.658 = 7.764 < 10.093] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)I550.CB) [> 4.389 = 7.316 < 9.510] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)E548.CB) [> 4.508 = 7.513 < 9.767] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)A536.CB) [> 4.435 = 7.392 < 9.610] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)S492.CB) [> 4.518 = 7.530 < 9.789] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)L441.CB) [> 4.435 = 7.392 < 9.610] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)S287.CB) [> 3.425 = 5.708 < 7.421] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)Q309.CB) [> 3.929 = 6.548 < 8.512] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)S287.CB) [> 3.191 = 5.318 < 6.914] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)N284.CB) [> 4.366 = 7.277 < 9.460] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)E552.CB) [> 4.208 = 7.014 < 9.118] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)I129.CB) [> 3.845 = 6.409 < 8.331] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)A553.CB) [> 4.374 = 7.291 < 9.478] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)I129.CB) [> 4.304 = 7.173 < 9.324] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)I129.CB) [> 3.513 = 5.855 < 7.611] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)A127.CB) [> 3.271 = 5.452 < 7.088] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)A127.CB) [> 4.474 = 7.457 < 9.694] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N105.CB, (T0547)G126.CA) [> 3.969 = 6.615 < 8.600] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N105.CB, (T0547)E125.CB) [> 3.196 = 5.327 < 6.925] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y104.CB, (T0547)E125.CB) [> 3.782 = 6.303 < 8.194] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K102.CB, (T0547)E125.CB) [> 3.238 = 5.397 < 7.017] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K102.CB, (T0547)N124.CB) [> 4.489 = 7.481 < 9.725] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G101.CA, (T0547)A127.CB) [> 4.671 = 7.785 < 10.120] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G101.CA, (T0547)N123.CB) [> 3.503 = 5.839 < 7.591] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)S492.CB) [> 4.440 = 7.401 < 9.621] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)E285.CB) [> 3.012 = 5.020 < 6.526] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)K286.CB) [> 3.141 = 5.235 < 6.806] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)E546.CB) [> 4.645 = 7.742 < 10.065] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)A334.CB) [> 4.487 = 7.479 < 9.722] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)T413.CB) [> 3.478 = 5.796 < 7.535] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)H527.CB) [> 4.670 = 7.783 < 10.118] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)K526.CB) [> 2.854 = 4.757 < 6.184] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)K526.CB) [> 3.997 = 6.662 < 8.660] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D501.CB, (T0547)L511.CB) [> 3.972 = 6.621 < 8.607] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)E278.CB) [> 3.266 = 5.444 < 7.077] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)E278.CB) [> 4.208 = 7.013 < 9.117] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)V277.CB) [> 2.772 = 4.620 < 6.005] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)K286.CB) [> 4.617 = 7.695 < 10.003] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)V277.CB) [> 4.168 = 6.946 < 9.030] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)L275.CB) [> 4.480 = 7.467 < 9.707] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L275.CB) [> 2.995 = 4.992 < 6.490] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L275.CB) [> 4.524 = 7.540 < 9.802] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N221.CB, (T0547)K267.CB) [> 4.231 = 7.052 < 9.168] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N221.CB, (T0547)N265.CB) [> 2.731 = 4.551 < 5.917] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)E220.CB) [> 4.376 = 7.293 < 9.480] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)E220.CB) [> 4.652 = 7.754 < 10.080] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)E220.CB) [> 4.117 = 6.862 < 8.921] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)E220.CB) [> 4.615 = 7.691 < 9.999] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)F144.CB) [> 2.963 = 4.938 < 6.419] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)V436.CB) [> 4.501 = 7.501 < 9.751] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)V277.CB) [> 4.656 = 7.759 < 10.087] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)D494.CB) [> 2.849 = 4.748 < 6.172] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)L497.CB) [> 3.284 = 5.473 < 7.115] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)D494.CB) [> 4.736 = 7.893 < 10.261] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)H500.CB) [> 3.966 = 6.611 < 8.594] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)H500.CB) [> 3.730 = 6.217 < 8.082] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)K526.CB) [> 3.749 = 6.249 < 8.123] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D494.CB, (T0547)T534.CB) [> 4.451 = 7.418 < 9.643] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D494.CB, (T0547)F530.CB) [> 4.380 = 7.300 < 9.490] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)E535.CB) [> 4.324 = 7.207 < 9.369] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)T534.CB) [> 3.805 = 6.341 < 8.243] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)K526.CB) [> 4.654 = 7.756 < 10.083] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)L420.CB) [> 4.490 = 7.484 < 9.729] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)A553.CB) [> 3.559 = 5.931 < 7.711] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I551.CB) [> 2.348 = 3.914 < 5.088] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I550.CB) [> 4.276 = 7.127 < 9.265] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)S490.CB) [> 4.182 = 6.970 < 9.061] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)G549.CA) [> 3.831 = 6.385 < 8.301] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)A553.CB) [> 4.755 = 7.925 < 10.302] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)A553.CB) [> 2.743 = 4.572 < 5.943] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)E552.CB) [> 4.659 = 7.766 < 10.095] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)K414.CB) [> 3.381 = 5.635 < 7.325] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)L394.CB) [> 4.419 = 7.365 < 9.574] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)H379.CB) [> 3.700 = 6.166 < 8.016] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)L378.CB) [> 4.011 = 6.686 < 8.691] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)K415.CB) [> 4.671 = 7.785 < 10.121] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)T409.CB) [> 3.937 = 6.561 < 8.529] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)D564.CB) [> 4.073 = 6.788 < 8.824] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)L563.CB) [> 3.457 = 5.762 < 7.490] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)Y565.CB) [> 4.582 = 7.636 < 9.927] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)K493.CB) [> 3.852 = 6.420 < 8.346] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)Y440.CB) [> 4.733 = 7.888 < 10.255] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)T534.CB) [> 4.656 = 7.759 < 10.087] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)Q433.CB) [> 4.188 = 6.980 < 9.073] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)P426.CB) [> 3.136 = 5.227 < 6.795] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)K493.CB) [> 3.246 = 5.410 < 7.033] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)K493.CB) [> 3.919 = 6.532 < 8.491] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)S368.CB) [> 3.970 = 6.617 < 8.601] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)D393.CB) [> 3.754 = 6.257 < 8.134] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)V442.CB) [> 4.675 = 7.792 < 10.130] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)P426.CB) [> 4.782 = 7.970 < 10.362] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)S368.CB) [> 4.759 = 7.932 < 10.311] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I567.CB) [> 4.646 = 7.744 < 10.067] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I556.CB) [> 4.760 = 7.933 < 10.313] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K286.CB, (T0547)A327.CB) [> 3.436 = 5.726 < 7.444] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E285.CB, (T0547)A327.CB) [> 4.695 = 7.825 < 10.172] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)L418.CB) [> 4.578 = 7.630 < 9.919] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N253.CB, (T0547)G262.CA) [> 4.766 = 7.943 < 10.326] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)L275.CB) [> 3.846 = 6.410 < 8.333] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)Y279.CB) [> 4.455 = 7.425 < 9.653] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)S280.CB) [> 4.460 = 7.434 < 9.664] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)L408.CB) [> 2.654 = 4.423 < 5.750] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)T390.CB) [> 4.676 = 7.793 < 10.131] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)H379.CB) [> 3.166 = 5.276 < 6.859] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)L378.CB) [> 4.674 = 7.789 < 10.126] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)K423.CB) [> 4.477 = 7.462 < 9.701] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)D380.CB) [> 3.489 = 5.815 < 7.560] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)H379.CB) [> 4.038 = 6.729 < 8.748] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)L378.CB) [> 3.117 = 5.195 < 6.753] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)T390.CB) [> 4.669 = 7.781 < 10.116] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)L385.CB) [> 4.635 = 7.724 < 10.041] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)D380.CB) [> 4.556 = 7.593 < 9.871] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)D562.CB) [> 3.911 = 6.518 < 8.474] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)K423.CB) [> 3.891 = 6.485 < 8.430] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)S381.CB) [> 3.927 = 6.545 < 8.509] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)G549.CA) [> 4.782 = 7.970 < 10.361] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)Q437.CB) [> 4.689 = 7.815 < 10.159] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)G549.CA) [> 4.747 = 7.912 < 10.285] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)K526.CB) [> 4.416 = 7.360 < 9.568] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)H532.CB) [> 4.481 = 7.469 < 9.709] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)H532.CB) [> 4.221 = 7.035 < 9.146] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)N425.CB) [> 3.798 = 6.331 < 8.230] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)G544.CA) [> 3.960 = 6.601 < 8.581] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)K543.CB) [> 3.591 = 5.985 < 7.780] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)H329.CB) [> 3.570 = 5.950 < 7.736] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)N328.CB) [> 3.469 = 5.782 < 7.516] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R288.CB, (T0547)K311.CB) [> 4.387 = 7.313 < 9.506] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R288.CB, (T0547)K310.CB) [> 3.350 = 5.584 < 7.259] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)V502.CB) [> 2.965 = 4.942 < 6.425] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D398.CB, (T0547)D503.CB) [> 4.743 = 7.904 < 10.276] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)D503.CB) [> 3.156 = 5.260 < 6.838] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)V502.CB) [> 3.383 = 5.638 < 7.329] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)L411.CB) [> 3.686 = 6.143 < 7.986] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)H410.CB) [> 2.751 = 4.585 < 5.960] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)F510.CB) [> 3.927 = 6.545 < 8.508] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)D503.CB) [> 4.453 = 7.422 < 9.649] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)V502.CB) [> 2.495 = 4.159 < 5.406] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)D501.CB) [> 3.711 = 6.185 < 8.041] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)R402.CB) [> 4.016 = 6.693 < 8.701] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)R402.CB) [> 3.332 = 5.554 < 7.220] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)F530.CB) [> 4.011 = 6.685 < 8.690] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)L313.CB) [> 3.296 = 5.493 < 7.141] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)Y104.CB) [> 4.578 = 7.629 < 9.918] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)P315.CB) [> 4.432 = 7.386 < 9.602] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L313.CB) [> 4.466 = 7.443 < 9.676] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)P315.CB) [> 3.735 = 6.225 < 8.093] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)E314.CB) [> 3.993 = 6.655 < 8.651] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)L313.CB) [> 3.843 = 6.405 < 8.327] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E60.CB, (T0547)Y104.CB) [> 3.244 = 5.407 < 7.029] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)D316.CB) [> 3.534 = 5.890 < 7.658] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)P315.CB) [> 3.198 = 5.329 < 6.928] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K57.CB, (T0547)D316.CB) [> 3.415 = 5.691 < 7.398] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L54.CB, (T0547)D316.CB) [> 2.368 = 3.946 < 5.130] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)D316.CB) [> 4.717 = 7.862 < 10.220] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)L337.CB) [> 3.619 = 6.032 < 7.841] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)P315.CB) [> 4.754 = 7.924 < 10.301] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)D316.CB) [> 4.787 = 7.978 < 10.372] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)A268.CB) [> 3.604 = 6.007 < 7.809] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)L258.CB) [> 4.291 = 7.151 < 9.296] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)E210.CB) [> 4.732 = 7.887 < 10.254] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)T207.CB) [> 3.263 = 5.439 < 7.071] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)A251.CB) [> 4.759 = 7.931 < 10.310] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)L206.CB) [> 4.720 = 7.867 < 10.227] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)A251.CB) [> 3.115 = 5.191 < 6.749] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)W194.CB) [> 4.649 = 7.749 < 10.074] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)N179.CB) [> 4.613 = 7.689 < 9.996] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)Y545.CB) [> 3.547 = 5.912 < 7.685] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)Y545.CB) [> 4.745 = 7.908 < 10.281] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)Y104.CB) [> 4.793 = 7.989 < 10.385] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)R439.CB) [> 4.665 = 7.775 < 10.107] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)E507.CB) [> 3.221 = 5.369 < 6.980] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)K506.CB) [> 2.474 = 4.124 < 5.361] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)E505.CB) [> 4.764 = 7.939 < 10.321] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)E507.CB) [> 4.618 = 7.697 < 10.006] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)K506.CB) [> 2.942 = 4.903 < 6.374] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)E505.CB) [> 4.260 = 7.099 < 9.229] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)V504.CB) [> 3.898 = 6.496 < 8.445] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)E507.CB) [> 2.657 = 4.428 < 5.757] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)K506.CB) [> 2.539 = 4.231 < 5.500] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)E505.CB) [> 2.430 = 4.050 < 5.265] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)V504.CB) [> 3.334 = 5.556 < 7.223] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)N508.CB) [> 4.717 = 7.862 < 10.220] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)L497.CB) [> 3.017 = 5.029 < 6.537] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)H500.CB) [> 3.168 = 5.280 < 6.864] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)V504.CB) [> 3.959 = 6.598 < 8.578] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)H500.CB) [> 3.447 = 5.746 < 7.470] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)N541.CB) [> 3.205 = 5.342 < 6.945] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)I540.CB) [> 4.146 = 6.911 < 8.984] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)R439.CB) [> 3.441 = 5.735 < 7.455] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)N541.CB) [> 3.953 = 6.589 < 8.565] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)I540.CB) [> 3.570 = 5.950 < 7.735] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)R439.CB) [> 3.871 = 6.451 < 8.387] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)E542.CB) [> 4.743 = 7.906 < 10.277] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)N541.CB) [> 3.644 = 6.074 < 7.896] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)I540.CB) [> 3.701 = 6.169 < 8.019] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)D501.CB) [> 4.033 = 6.722 < 8.738] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)F530.CB) [> 4.538 = 7.564 < 9.833] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)K526.CB) [> 2.423 = 4.039 < 5.250] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)H527.CB) [> 4.685 = 7.808 < 10.150] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)K526.CB) [> 3.925 = 6.541 < 8.503] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S403.CB, (T0547)D501.CB) [> 4.156 = 6.926 < 9.004] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D401.CB, (T0547)D503.CB) [> 4.734 = 7.890 < 10.257] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D401.CB, (T0547)V502.CB) [> 2.723 = 4.538 < 5.900] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D401.CB, (T0547)D501.CB) [> 4.170 = 6.951 < 9.036] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q400.CB, (T0547)D503.CB) [> 4.766 = 7.944 < 10.327] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q400.CB, (T0547)V502.CB) [> 4.392 = 7.320 < 9.516] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)D503.CB) [> 3.164 = 5.274 < 6.856] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)N508.CB) [> 4.241 = 7.068 < 9.189] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)E507.CB) [> 3.958 = 6.597 < 8.576] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)N508.CB) [> 4.197 = 6.995 < 9.093] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)N508.CB) [> 3.195 = 5.324 < 6.922] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)K526.CB) [> 3.427 = 5.712 < 7.426] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)K526.CB) [> 3.901 = 6.502 < 8.452] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)N305.CB) [> 3.766 = 6.277 < 8.160] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)G544.CA) [> 4.772 = 7.954 < 10.340] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S449.CB, (T0547)T534.CB) [> 3.562 = 5.936 < 7.717] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S449.CB, (T0547)P533.CB) [> 2.990 = 4.983 < 6.477] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)S555.CB) [> 3.554 = 5.923 < 7.700] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)S555.CB) [> 3.583 = 5.972 < 7.763] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)E552.CB) [> 4.727 = 7.879 < 10.242] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)I551.CB) [> 4.759 = 7.931 < 10.310] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)L563.CB) [> 4.383 = 7.305 < 9.496] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)V547.CB) [> 4.650 = 7.749 < 10.074] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)D562.CB) [> 4.400 = 7.334 < 9.534] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q424.CB, (T0547)Y565.CB) [> 4.623 = 7.705 < 10.016] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)Y565.CB) [> 3.768 = 6.280 < 8.163] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)Y565.CB) [> 4.769 = 7.949 < 10.334] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)A307.CB) [> 3.255 = 5.425 < 7.052] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)I306.CB) [> 2.829 = 4.716 < 6.130] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)N305.CB) [> 3.942 = 6.570 < 8.541] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)K304.CB) [> 2.956 = 4.927 < 6.405] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)E285.CB) [> 4.747 = 7.912 < 10.286] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)I306.CB) [> 4.298 = 7.163 < 9.312] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)R288.CB) [> 4.630 = 7.716 < 10.031] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L313.CB) [> 4.593 = 7.655 < 9.951] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)E285.CB) [> 4.598 = 7.664 < 9.963] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N141.CB, (T0547)E172.CB) [> 3.341 = 5.569 < 7.239] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N141.CB, (T0547)D168.CB) [> 4.729 = 7.881 < 10.245] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)D168.CB) [> 4.703 = 7.839 < 10.191] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)V436.CB) [> 2.483 = 4.138 < 5.379] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)E435.CB) [> 4.006 = 6.677 < 8.681] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)T130.CB) [> 4.740 = 7.900 < 10.271] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)K286.CB) [> 4.119 = 6.865 < 8.925] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)D562.CB) [> 3.227 = 5.379 < 6.993] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)T559.CB) [> 3.964 = 6.607 < 8.589] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)L441.CB) [> 4.670 = 7.783 < 10.118] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)D562.CB) [> 4.617 = 7.695 < 10.003] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)Y565.CB) [> 4.715 = 7.858 < 10.216] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)Y565.CB) [> 3.879 = 6.465 < 8.404] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)Q400.CB) [> 3.203 = 5.338 < 6.940] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)L399.CB) [> 3.396 = 5.660 < 7.358] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)Q400.CB) [> 4.739 = 7.898 < 10.267] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)L399.CB) [> 4.743 = 7.904 < 10.276] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)L399.CB) [> 4.647 = 7.745 < 10.069] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)E542.CB) [> 3.386 = 5.644 < 7.337] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)N541.CB) [> 4.460 = 7.434 < 9.664] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)E548.CB) [> 4.738 = 7.896 < 10.265] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)F318.CB) [> 2.783 = 4.639 < 6.030] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F301.CB, (T0547)R323.CB) [> 4.788 = 7.981 < 10.375] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)N328.CB) [> 4.648 = 7.746 < 10.070] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)V547.CB) [> 4.398 = 7.331 < 9.530] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)Y440.CB) [> 4.513 = 7.521 < 9.778] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)R439.CB) [> 3.299 = 5.498 < 7.147] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)Q437.CB) [> 3.033 = 5.055 < 6.571] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)Y440.CB) [> 2.845 = 4.742 < 6.164] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)R439.CB) [> 4.367 = 7.279 < 9.462] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)Y440.CB) [> 4.220 = 7.033 < 9.144] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)D558.CB) [> 4.377 = 7.295 < 9.484] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)I556.CB) [> 3.949 = 6.581 < 8.556] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)S555.CB) [> 3.700 = 6.167 < 8.017] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)R439.CB) [> 3.828 = 6.379 < 8.293] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)R439.CB) [> 4.789 = 7.982 < 10.377] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)Q437.CB) [> 4.252 = 7.087 < 9.213] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)K414.CB) [> 4.757 = 7.928 < 10.306] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)L563.CB) [> 4.383 = 7.305 < 9.496] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q400.CB, (T0547)Q437.CB) [> 4.236 = 7.060 < 9.178] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)T531.CB) [> 4.522 = 7.537 < 9.799] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D398.CB, (T0547)T531.CB) [> 4.257 = 7.095 < 9.223] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)A536.CB) [> 4.327 = 7.211 < 9.374] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)H532.CB) [> 4.167 = 6.946 < 9.029] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)T531.CB) [> 2.632 = 4.387 < 5.703] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)F530.CB) [> 4.157 = 6.929 < 9.008] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)Q437.CB) [> 4.732 = 7.887 < 10.253] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)E435.CB) [> 4.762 = 7.936 < 10.317] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)V436.CB) [> 4.537 = 7.561 < 9.829] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)E435.CB) [> 2.365 = 3.941 < 5.123] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)D434.CB) [> 4.792 = 7.987 < 10.383] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)G421.CA) [> 4.106 = 6.843 < 8.896] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)H410.CB) [> 4.668 = 7.780 < 10.115] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)Y565.CB) [> 3.976 = 6.627 < 8.615] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)Y440.CB) [> 4.403 = 7.338 < 9.539] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)V436.CB) [> 2.834 = 4.724 < 6.141] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)Y440.CB) [> 4.080 = 6.800 < 8.840] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)V436.CB) [> 4.053 = 6.755 < 8.781] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)T534.CB) [> 4.659 = 7.765 < 10.094] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)T534.CB) [> 3.621 = 6.035 < 7.846] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)A427.CB) [> 4.015 = 6.692 < 8.700] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)F460.CB) [> 4.576 = 7.627 < 9.915] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)E542.CB) [> 4.462 = 7.436 < 9.667] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)E542.CB) [> 4.771 = 7.951 < 10.337] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S403.CB, (T0547)S539.CB) [> 4.008 = 6.680 < 8.684] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q400.CB, (T0547)T531.CB) [> 2.045 = 3.408 < 4.430] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q400.CB, (T0547)E438.CB) [> 3.797 = 6.329 < 8.227] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)I407.CB) [> 4.767 = 7.944 < 10.328] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)A427.CB) [> 4.248 = 7.080 < 9.204] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)A553.CB) [> 4.693 = 7.821 < 10.168] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)Q433.CB) [> 4.748 = 7.914 < 10.288] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I306.CB, (T0547)F318.CB) [> 4.683 = 7.805 < 10.146] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N305.CB, (T0547)F324.CB) [> 4.022 = 6.703 < 8.714] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E285.CB, (T0547)I319.CB) [> 4.779 = 7.965 < 10.354] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)K311.CB) [> 3.894 = 6.490 < 8.437] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)N305.CB) [> 3.212 = 5.354 < 6.960] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)K310.CB) [> 2.660 = 4.433 < 5.763] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)N305.CB) [> 4.589 = 7.648 < 9.942] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)N305.CB) [> 3.689 = 6.148 < 7.992] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)N305.CB) [> 3.661 = 6.101 < 7.932] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)L313.CB) [> 4.796 = 7.994 < 10.392] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)K310.CB) [> 4.757 = 7.929 < 10.308] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)V397.CB) [> 4.593 = 7.656 < 9.952] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)K423.CB) [> 4.782 = 7.970 < 10.362] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)G421.CA) [> 4.796 = 7.993 < 10.391] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)G421.CA) [> 3.694 = 6.157 < 8.004] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)Q554.CB) [> 4.116 = 6.860 < 8.918] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)A553.CB) [> 3.648 = 6.080 < 7.904] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)A427.CB) [> 4.092 = 6.820 < 8.866] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)L389.CB) [> 4.794 = 7.990 < 10.387] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)E386.CB) [> 4.757 = 7.929 < 10.307] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)D558.CB) [> 4.776 = 7.960 < 10.348] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)A427.CB) [> 4.135 = 6.891 < 8.958] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L375.CB) [> 4.668 = 7.780 < 10.114] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)T559.CB) [> 4.664 = 7.774 < 10.106] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)L378.CB) [> 4.578 = 7.629 < 9.918] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)F530.CB) [> 3.061 = 5.101 < 6.632] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)A405.CB) [> 4.748 = 7.913 < 10.286] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)L399.CB) [> 4.451 = 7.419 < 9.644] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S490.CB, (T0547)S539.CB) [> 3.048 = 5.080 < 6.604] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S490.CB, (T0547)I538.CB) [> 4.205 = 7.008 < 9.110] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S490.CB, (T0547)I537.CB) [> 3.139 = 5.232 < 6.801] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E488.CB, (T0547)S539.CB) [> 3.051 = 5.086 < 6.611] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E488.CB, (T0547)I538.CB) [> 4.295 = 7.159 < 9.307] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)V547.CB) [> 4.027 = 6.711 < 8.725] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)I540.CB) [> 3.482 = 5.803 < 7.544] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)I489.CB) [> 4.681 = 7.802 < 10.143] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)E488.CB) [> 3.523 = 5.871 < 7.632] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)A553.CB) [> 4.755 = 7.925 < 10.302] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)E488.CB) [> 3.952 = 6.586 < 8.562] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D566.CB, (T0547)L598.CB) [> 3.519 = 5.865 < 7.624] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D566.CB, (T0547)Y597.CB) [> 3.139 = 5.232 < 6.802] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y565.CB, (T0547)L598.CB) [> 2.701 = 4.502 < 5.853] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)F599.CB) [> 4.010 = 6.684 < 8.689] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)L598.CB) [> 4.642 = 7.736 < 10.057] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)F599.CB) [> 3.325 = 5.541 < 7.203] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)L598.CB) [> 4.377 = 7.295 < 9.484] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)F599.CB) [> 3.210 = 5.350 < 6.954] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)F599.CB) [> 3.406 = 5.677 < 7.381] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I550.CB, (T0547)F599.CB) [> 4.653 = 7.755 < 10.082] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K493.CB, (T0547)A536.CB) [> 3.148 = 5.246 < 6.820] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K493.CB, (T0547)H532.CB) [> 3.612 = 6.020 < 7.826] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S492.CB, (T0547)H532.CB) [> 3.954 = 6.590 < 8.566] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y491.CB, (T0547)I537.CB) [> 3.250 = 5.417 < 7.042] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)I489.CB) [> 4.071 = 6.785 < 8.820] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)E488.CB) [> 3.389 = 5.648 < 7.342] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)K493.CB) [> 4.504 = 7.507 < 9.759] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)I489.CB) [> 2.446 = 4.076 < 5.299] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)E488.CB) [> 4.477 = 7.462 < 9.701] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)I489.CB) [> 3.937 = 6.561 < 8.530] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)S492.CB) [> 4.266 = 7.109 < 9.242] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)Y491.CB) [> 3.493 = 5.822 < 7.568] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)S490.CB) [> 3.883 = 6.471 < 8.413] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)I489.CB) [> 3.821 = 6.369 < 8.279] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q437.CB, (T0547)K493.CB) [> 2.776 = 4.627 < 6.015] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q437.CB, (T0547)S492.CB) [> 2.907 = 4.846 < 6.299] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q437.CB, (T0547)Y491.CB) [> 4.002 = 6.669 < 8.670] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q437.CB, (T0547)I489.CB) [> 4.023 = 6.706 < 8.717] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)K493.CB) [> 3.472 = 5.787 < 7.523] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)E542.CB) [> 4.634 = 7.724 < 10.041] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T473.CB, (T0547)A553.CB) [> 2.689 = 4.482 < 5.827] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T473.CB, (T0547)E552.CB) [> 4.578 = 7.630 < 9.919] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T473.CB, (T0547)E548.CB) [> 4.590 = 7.651 < 9.946] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)T473.CB) [> 4.763 = 7.938 < 10.319] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)Q554.CB) [> 3.505 = 5.842 < 7.595] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)A553.CB) [> 2.562 = 4.270 < 5.551] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)I551.CB) [> 3.591 = 5.985 < 7.780] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)S475.CB) [> 3.873 = 6.455 < 8.392] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)T473.CB) [> 3.348 = 5.580 < 7.254] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)Q554.CB) [> 4.502 = 7.503 < 9.755] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)I489.CB) [> 4.245 = 7.075 < 9.197] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)S475.CB) [> 4.640 = 7.733 < 10.053] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)L303.CB) [> 3.167 = 5.278 < 6.862] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)I302.CB) [> 2.896 = 4.827 < 6.275] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)F301.CB) [> 3.689 = 6.148 < 7.993] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)V300.CB) [> 2.970 = 4.951 < 6.436] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)E294.CB) [> 3.946 = 6.577 < 8.551] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)Y290.CB) [> 3.239 = 5.398 < 7.018] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)I319.CB) [> 2.932 = 4.886 < 6.352] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)Y290.CB) [> 4.159 = 6.932 < 9.011] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)I317.CB) [> 3.754 = 6.256 < 8.133] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)R288.CB) [> 4.574 = 7.623 < 9.910] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K264.CB, (T0547)L313.CB) [> 4.731 = 7.884 < 10.250] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)K286.CB) [> 4.750 = 7.917 < 10.292] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)Y255.CB) [> 3.734 = 6.223 < 8.089] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)I254.CB) [> 3.364 = 5.607 < 7.289] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)N253.CB) [> 4.471 = 7.452 < 9.687] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)V325.CB) [> 4.659 = 7.766 < 10.095] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)F324.CB) [> 2.401 = 4.001 < 5.202] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)R323.CB) [> 2.377 = 3.962 < 5.151] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)G322.CA) [> 3.429 = 5.715 < 7.430] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)S321.CB) [> 2.928 = 4.880 < 6.344] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)P315.CB) [> 3.322 = 5.538 < 7.199] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)K311.CB) [> 3.665 = 6.109 < 7.941] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D298.CB, (T0547)K310.CB) [> 2.806 = 4.676 < 6.079] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E294.CB, (T0547)K311.CB) [> 3.990 = 6.651 < 8.646] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)I317.CB) [> 4.163 = 6.938 < 9.019] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)P315.CB) [> 4.021 = 6.702 < 8.712] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)K311.CB) [> 3.753 = 6.254 < 8.131] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)V299.CB) [> 3.846 = 6.411 < 8.334] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R288.CB, (T0547)E314.CB) [> 2.998 = 4.996 < 6.495] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)E314.CB) [> 4.237 = 7.062 < 9.181] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K286.CB, (T0547)E314.CB) [> 2.946 = 4.910 < 6.383] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N284.CB, (T0547)P315.CB) [> 4.377 = 7.296 < 9.484] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K283.CB, (T0547)P315.CB) [> 3.197 = 5.328 < 6.926] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)N179.CB) [> 4.419 = 7.364 < 9.574] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)A268.CB) [> 4.266 = 7.110 < 9.243] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)V299.CB) [> 4.421 = 7.369 < 9.579] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)Y295.CB) [> 4.705 = 7.842 < 10.194] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)Y290.CB) [> 4.760 = 7.934 < 10.314] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)K283.CB) [> 4.382 = 7.304 < 9.495] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)F318.CB) [> 4.794 = 7.990 < 10.387] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)P315.CB) [> 3.944 = 6.573 < 8.545] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)Q309.CB) [> 4.473 = 7.455 < 9.691] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)K304.CB) [> 4.157 = 6.928 < 9.006] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)L303.CB) [> 2.358 = 3.931 < 5.110] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)Y290.CB) [> 3.668 = 6.113 < 7.947] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)V299.CB) [> 4.322 = 7.203 < 9.363] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)F599.CB) [> 3.166 = 5.277 < 6.860] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)L598.CB) [> 4.467 = 7.445 < 9.679] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P243.CB, (T0547)I254.CB) [> 3.637 = 6.062 < 7.881] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P243.CB, (T0547)N253.CB) [> 3.657 = 6.094 < 7.923] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P243.CB, (T0547)G252.CA) [> 4.194 = 6.990 < 9.087] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H242.CB, (T0547)N253.CB) [> 3.862 = 6.436 < 8.367] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H242.CB, (T0547)G252.CA) [> 3.917 = 6.529 < 8.488] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)I302.CB) [> 2.983 = 4.971 < 6.463] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)F301.CB) [> 3.858 = 6.430 < 8.359] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)F282.CB) [> 4.775 = 7.958 < 10.346] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)K267.CB) [> 4.574 = 7.623 < 9.910] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L266.CB) [> 4.678 = 7.797 < 10.136] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S202.CB, (T0547)F232.CB) [> 4.123 = 6.872 < 8.934] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)N265.CB) [> 4.771 = 7.951 < 10.336] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)N265.CB) [> 4.605 = 7.676 < 9.978] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)L266.CB) [> 4.408 = 7.346 < 9.550] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)S368.CB) [> 4.571 = 7.619 < 9.904] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)K367.CB) [> 3.725 = 6.208 < 8.070] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)Y366.CB) [> 4.599 = 7.666 < 9.965] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)R288.CB) [> 4.428 = 7.380 < 9.594] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)S287.CB) [> 4.701 = 7.836 < 10.186] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)D364.CB) [> 4.673 = 7.788 < 10.125] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)K286.CB) [> 4.710 = 7.850 < 10.205] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)N284.CB) [> 4.680 = 7.800 < 10.139] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)Q281.CB) [> 4.762 = 7.936 < 10.317] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)V299.CB) [> 3.903 = 6.505 < 8.456] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)D316.CB) [> 4.745 = 7.908 < 10.281] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E225.CB, (T0547)K264.CB) [> 4.665 = 7.775 < 10.107] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)K260.CB) [> 4.722 = 7.870 < 10.231] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)K260.CB) [> 4.668 = 7.780 < 10.114] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)Q237.CB) [> 3.265 = 5.442 < 7.075] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)S236.CB) [> 3.269 = 5.448 < 7.082] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G199.CA, (T0547)A247.CB) [> 4.606 = 7.677 < 9.981] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)K311.CB) [> 3.650 = 6.083 < 7.908] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)Q309.CB) [> 4.784 = 7.973 < 10.364] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)K310.CB) [> 3.044 = 5.073 < 6.595] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)K267.CB) [> 4.332 = 7.220 < 9.386] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T256.CB, (T0547)I302.CB) [> 4.652 = 7.754 < 10.080] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T256.CB, (T0547)F301.CB) [> 4.789 = 7.981 < 10.376] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)I302.CB) [> 3.693 = 6.155 < 8.002] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)K267.CB) [> 3.935 = 6.558 < 8.525] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)F301.CB) [> 4.624 = 7.706 < 10.018] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)V299.CB) [> 4.340 = 7.233 < 9.403] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)Q309.CB) [> 4.389 = 7.315 < 9.509] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)V299.CB) [> 4.731 = 7.886 < 10.251] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)Q309.CB) [> 3.599 = 5.998 < 7.797] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)Y290.CB) [> 4.392 = 7.320 < 9.516] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)R288.CB) [> 4.768 = 7.946 < 10.330] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)S287.CB) [> 2.434 = 4.057 < 5.275] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E240.CB, (T0547)Y290.CB) [> 4.284 = 7.141 < 9.283] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)L365.CB) [> 4.178 = 6.963 < 9.052] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)D364.CB) [> 4.720 = 7.866 < 10.226] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)Y363.CB) [> 4.074 = 6.790 < 8.827] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)N201.CB) [> 3.611 = 6.018 < 7.824] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)Y366.CB) [> 4.329 = 7.215 < 9.380] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)L365.CB) [> 3.120 = 5.201 < 6.761] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)A276.CB) [> 3.732 = 6.220 < 8.086] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)A276.CB) [> 4.610 = 7.683 < 9.988] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)G274.CA) [> 4.719 = 7.865 < 10.225] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)G205.CA) [> 4.136 = 6.894 < 8.962] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)T239.CB) [> 4.023 = 6.705 < 8.716] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)Q237.CB) [> 3.441 = 5.735 < 7.455] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)I238.CB) [> 3.908 = 6.513 < 8.467] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)T209.CB) [> 4.661 = 7.768 < 10.099] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)E210.CB) [> 4.790 = 7.984 < 10.379] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)L266.CB) [> 3.887 = 6.479 < 8.423] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K175.CB, (T0547)E225.CB) [> 2.695 = 4.492 < 5.840] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G199.CA, (T0547)H233.CB) [> 4.330 = 7.216 < 9.381] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G199.CA, (T0547)F232.CB) [> 4.628 = 7.714 < 10.028] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)K367.CB) [> 4.107 = 6.845 < 8.899] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)L365.CB) [> 4.178 = 6.963 < 9.052] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)D364.CB) [> 4.720 = 7.866 < 10.226] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)Y363.CB) [> 4.611 = 7.685 < 9.990] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)L365.CB) [> 3.120 = 5.200 < 6.760] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)I238.CB) [> 4.788 = 7.979 < 10.373] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)Q237.CB) [> 1.856 = 3.094 < 4.022] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)Y363.CB) [> 4.219 = 7.031 < 9.141] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)I238.CB) [> 4.263 = 7.105 < 9.236] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)Q237.CB) [> 3.600 = 6.001 < 7.801] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)G235.CA) [> 3.871 = 6.451 < 8.386] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)S368.CB) [> 4.423 = 7.371 < 9.582] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)K367.CB) [> 3.741 = 6.235 < 8.106] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)I417.CB) [> 4.137 = 6.896 < 8.965] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)L313.CB) [> 2.757 = 4.595 < 5.973] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)D312.CB) [> 4.738 = 7.897 < 10.266] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I302.CB, (T0547)I317.CB) [> 3.160 = 5.267 < 6.847] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I302.CB, (T0547)P315.CB) [> 2.838 = 4.729 < 6.148] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I302.CB, (T0547)D312.CB) [> 3.590 = 5.983 < 7.778] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F301.CB, (T0547)D312.CB) [> 3.987 = 6.644 < 8.637] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D298.CB, (T0547)A307.CB) [> 4.771 = 7.952 < 10.338] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N297.CB, (T0547)Q309.CB) [> 3.518 = 5.864 < 7.623] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N297.CB, (T0547)A307.CB) [> 4.568 = 7.613 < 9.897] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)N305.CB) [> 4.516 = 7.526 < 9.784] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)K304.CB) [> 3.179 = 5.298 < 6.887] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I319.CB) [> 4.472 = 7.453 < 9.689] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)F324.CB) [> 4.770 = 7.951 < 10.336] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R288.CB, (T0547)I306.CB) [> 3.496 = 5.827 < 7.576] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R288.CB, (T0547)N305.CB) [> 3.488 = 5.814 < 7.558] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R288.CB, (T0547)K304.CB) [> 4.443 = 7.405 < 9.626] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)N347.CB) [> 3.731 = 6.218 < 8.084] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)M450.CB) [> 4.276 = 7.127 < 9.264] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)F453.CB) [> 4.086 = 6.810 < 8.853] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)F453.CB) [> 3.987 = 6.646 < 8.639] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)W454.CB) [> 4.512 = 7.520 < 9.776] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)D452.CB) [> 4.550 = 7.584 < 9.859] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I417.CB) [> 4.496 = 7.494 < 9.742] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)W454.CB) [> 3.102 = 5.170 < 6.721] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)F453.CB) [> 2.805 = 4.676 < 6.078] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)I417.CB) [> 3.280 = 5.466 < 7.106] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)G455.CA) [> 4.561 = 7.602 < 9.882] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)W454.CB) [> 2.224 = 3.707 < 4.820] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)F453.CB) [> 3.994 = 6.657 < 8.654] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)D452.CB) [> 4.463 = 7.439 < 9.671] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L418.CB) [> 4.716 = 7.860 < 10.218] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)W454.CB) [> 4.174 = 6.958 < 9.045] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)A296.CB) [> 4.417 = 7.361 < 9.569] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)E294.CB) [> 2.787 = 4.644 < 6.038] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)R293.CB) [> 4.419 = 7.365 < 9.575] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)Y290.CB) [> 3.569 = 5.949 < 7.734] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)V300.CB) [> 4.524 = 7.539 < 9.801] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)V299.CB) [> 2.435 = 4.058 < 5.275] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)L292.CB) [> 2.783 = 4.639 < 6.031] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)V299.CB) [> 4.065 = 6.775 < 8.808] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)A296.CB) [> 4.505 = 7.508 < 9.761] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)A307.CB) [> 4.615 = 7.692 < 10.000] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)I306.CB) [> 2.990 = 4.983 < 6.477] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)L303.CB) [> 3.961 = 6.601 < 8.582] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)I302.CB) [> 2.990 = 4.983 < 6.477] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)V299.CB) [> 3.988 = 6.647 < 8.641] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)D312.CB) [> 4.524 = 7.540 < 9.802] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)D312.CB) [> 3.453 = 5.755 < 7.481] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R288.CB, (T0547)N297.CB) [> 2.970 = 4.950 < 6.436] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K286.CB, (T0547)K304.CB) [> 3.711 = 6.185 < 8.040] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E285.CB, (T0547)S368.CB) [> 4.183 = 6.972 < 9.063] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N284.CB, (T0547)S368.CB) [> 4.198 = 6.997 < 9.096] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N284.CB, (T0547)Y366.CB) [> 2.586 = 4.310 < 5.603] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K283.CB, (T0547)S372.CB) [> 3.220 = 5.366 < 6.976] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K283.CB, (T0547)P371.CB) [> 4.422 = 7.370 < 9.581] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K283.CB, (T0547)K370.CB) [> 3.334 = 5.556 < 7.223] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K283.CB, (T0547)K367.CB) [> 4.282 = 7.137 < 9.278] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)P371.CB) [> 4.474 = 7.456 < 9.693] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)I369.CB) [> 3.346 = 5.577 < 7.250] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)A416.CB) [> 4.797 = 7.995 < 10.393] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)N289.CB) [> 3.319 = 5.531 < 7.191] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)R288.CB) [> 3.780 = 6.300 < 8.190] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)V299.CB) [> 3.274 = 5.456 < 7.093] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)D298.CB) [> 3.022 = 5.037 < 6.548] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)N297.CB) [> 4.636 = 7.727 < 10.045] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)L292.CB) [> 3.780 = 6.301 < 8.191] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)K76.CB) [> 3.717 = 6.194 < 8.052] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K57.CB, (T0547)T559.CB) [> 4.382 = 7.304 < 9.495] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)L563.CB) [> 3.578 = 5.963 < 7.752] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)D562.CB) [> 3.643 = 6.072 < 7.893] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)T559.CB) [> 2.932 = 4.886 < 6.352] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)Q437.CB) [> 4.583 = 7.638 < 9.929] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)V436.CB) [> 4.752 = 7.920 < 10.296] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)F514.CB) [> 4.404 = 7.340 < 9.542] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)E438.CB) [> 4.753 = 7.921 < 10.298] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)T559.CB) [> 2.206 = 3.677 < 4.780] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)D558.CB) [> 4.775 = 7.959 < 10.346] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)R439.CB) [> 4.338 = 7.230 < 9.400] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)D434.CB) [> 4.694 = 7.823 < 10.170] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)Q433.CB) [> 4.762 = 7.937 < 10.318] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G455.CA) [> 3.092 = 5.153 < 6.699] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)A307.CB) [> 4.524 = 7.541 < 9.803] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)Q309.CB) [> 4.689 = 7.815 < 10.160] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)E308.CB) [> 4.610 = 7.684 < 9.989] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)D312.CB) [> 3.535 = 5.892 < 7.659] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)E308.CB) [> 4.360 = 7.266 < 9.446] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K76.CB, (T0547)E308.CB) [> 4.292 = 7.153 < 9.298] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)I317.CB) [> 4.409 = 7.348 < 9.552] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)A307.CB) [> 4.670 = 7.784 < 10.119] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)K304.CB) [> 3.426 = 5.710 < 7.423] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)L303.CB) [> 3.087 = 5.145 < 6.689] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)F301.CB) [> 4.767 = 7.945 < 10.328] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)Y75.CB) [> 3.677 = 6.129 < 7.967] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)R288.CB) [> 3.629 = 6.048 < 7.862] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)Y75.CB) [> 4.797 = 7.995 < 10.393] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G64.CA, (T0547)Y75.CB) [> 3.230 = 5.383 < 6.997] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)K286.CB) [> 3.570 = 5.951 < 7.736] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)G77.CA) [> 4.150 = 6.917 < 8.992] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)Q437.CB) [> 3.903 = 6.504 < 8.455] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)A431.CB) [> 3.006 = 5.010 < 6.513] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)E548.CB) [> 4.558 = 7.596 < 9.875] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)Y509.CB) [> 4.700 = 7.834 < 10.184] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)E457.CB) [> 4.687 = 7.811 < 10.155] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)E435.CB) [> 4.112 = 6.853 < 8.909] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L583.CB) [> 4.700 = 7.833 < 10.183] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)L563.CB) [> 4.786 = 7.976 < 10.369] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)T559.CB) [> 4.349 = 7.248 < 9.422] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)K543.CB) [> 4.740 = 7.900 < 10.270] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)R439.CB) [> 4.535 = 7.558 < 9.825] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)Q433.CB) [> 3.535 = 5.891 < 7.659] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)I432.CB) [> 3.195 = 5.325 < 6.923] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)E438.CB) [> 4.651 = 7.751 < 10.076] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)Q433.CB) [> 3.228 = 5.381 < 6.995] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)V547.CB) [> 4.281 = 7.136 < 9.276] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)Q437.CB) [> 3.781 = 6.301 < 8.191] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)A431.CB) [> 4.240 = 7.066 < 9.186] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)Y545.CB) [> 4.402 = 7.337 < 9.538] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)A268.CB) [> 4.603 = 7.671 < 9.972] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)E148.CB) [> 4.752 = 7.921 < 10.297] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)F227.CB) [> 4.535 = 7.558 < 9.825] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)A147.CB) [> 4.300 = 7.167 < 9.317] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)Q554.CB) [> 4.580 = 7.633 < 9.922] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)A147.CB) [> 4.787 = 7.979 < 10.373] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)Q554.CB) [> 2.175 = 3.625 < 4.712] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)E148.CB) [> 4.611 = 7.685 < 9.991] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E115.CB, (T0547)Q554.CB) [> 4.170 = 6.950 < 9.035] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)Q554.CB) [> 4.645 = 7.741 < 10.064] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)F144.CB) [> 4.116 = 6.859 < 8.917] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)G143.CA) [> 4.603 = 7.672 < 9.974] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L100.CB, (T0547)L563.CB) [> 3.704 = 6.174 < 8.026] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K99.CB, (T0547)L563.CB) [> 3.427 = 5.711 < 7.424] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F174.CB, (T0547)E225.CB) [> 4.725 = 7.875 < 10.238] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F174.CB, (T0547)N221.CB) [> 4.016 = 6.693 < 8.701] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A165.CB, (T0547)F174.CB) [> 4.716 = 7.860 < 10.218] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M149.CB, (T0547)P178.CB) [> 4.793 = 7.989 < 10.385] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)N152.CB) [> 4.487 = 7.478 < 9.722] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)K175.CB) [> 4.733 = 7.888 < 10.254] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)R173.CB) [> 3.723 = 6.206 < 8.067] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)I166.CB) [> 3.905 = 6.508 < 8.460] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G205.CA) [> 4.770 = 7.950 < 10.335] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G159.CA) [> 4.755 = 7.925 < 10.302] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)K203.CB) [> 4.796 = 7.993 < 10.391] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I142.CB) [> 4.775 = 7.958 < 10.345] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)V442.CB) [> 4.680 = 7.801 < 10.141] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)L441.CB) [> 4.496 = 7.493 < 9.741] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)Q554.CB) [> 4.400 = 7.333 < 9.533] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)V547.CB) [> 3.354 = 5.590 < 7.267] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)G512.CA) [> 4.792 = 7.987 < 10.383] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)E457.CB) [> 4.148 = 6.913 < 8.987] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)Q554.CB) [> 2.672 = 4.453 < 5.789] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)Q458.CB) [> 4.422 = 7.370 < 9.582] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)E457.CB) [> 4.075 = 6.792 < 8.829] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)E457.CB) [> 2.517 = 4.195 < 5.454] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)G455.CA) [> 4.710 = 7.850 < 10.205] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)G421.CA) [> 4.770 = 7.950 < 10.335] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)Q458.CB) [> 4.794 = 7.990 < 10.387] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)E457.CB) [> 3.696 = 6.160 < 8.007] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N96.CB, (T0547)L563.CB) [> 4.160 = 6.933 < 9.012] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N96.CB, (T0547)S485.CB) [> 3.500 = 5.833 < 7.583] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N96.CB, (T0547)D434.CB) [> 4.696 = 7.827 < 10.175] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K95.CB, (T0547)S485.CB) [> 4.065 = 6.774 < 8.807] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)V547.CB) [> 4.271 = 7.118 < 9.253] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)L441.CB) [> 4.346 = 7.243 < 9.416] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)V436.CB) [> 4.167 = 6.944 < 9.028] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)I432.CB) [> 4.535 = 7.559 < 9.826] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)K415.CB) [> 4.731 = 7.885 < 10.250] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)V547.CB) [> 3.029 = 5.049 < 6.564] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)S485.CB) [> 3.727 = 6.212 < 8.076] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)T482.CB) [> 3.447 = 5.746 < 7.469] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)L441.CB) [> 3.265 = 5.442 < 7.075] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)V436.CB) [> 4.339 = 7.231 < 9.400] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)I432.CB) [> 4.216 = 7.027 < 9.135] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)Q554.CB) [> 4.241 = 7.069 < 9.190] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)V547.CB) [> 4.267 = 7.112 < 9.246] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)S445.CB) [> 4.653 = 7.756 < 10.082] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)M450.CB) [> 3.882 = 6.469 < 8.410] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)S555.CB) [> 3.874 = 6.457 < 8.394] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)A553.CB) [> 3.732 = 6.219 < 8.085] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)E552.CB) [> 3.921 = 6.535 < 8.495] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)I551.CB) [> 2.223 = 3.705 < 4.816] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)I550.CB) [> 3.709 = 6.181 < 8.035] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)S475.CB) [> 3.164 = 5.273 < 6.855] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)W454.CB) [> 4.147 = 6.912 < 8.986] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)P451.CB) [> 4.023 = 6.705 < 8.716] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)L446.CB) [> 4.722 = 7.870 < 10.232] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)T534.CB) [> 4.589 = 7.648 < 9.943] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)P451.CB) [> 4.243 = 7.072 < 9.193] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)L446.CB) [> 3.896 = 6.493 < 8.440] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)S445.CB) [> 2.151 = 3.584 < 4.660] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)K589.CB) [> 4.719 = 7.865 < 10.225] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)A553.CB) [> 4.799 = 7.998 < 10.397] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)L441.CB) [> 2.578 = 4.297 < 5.586] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)I550.CB) [> 3.647 = 6.078 < 7.902] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)A536.CB) [> 3.929 = 6.548 < 8.513] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)E535.CB) [> 3.130 = 5.217 < 6.782] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)I481.CB) [> 3.939 = 6.565 < 8.534] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)D480.CB) [> 3.478 = 5.797 < 7.536] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)S477.CB) [> 3.783 = 6.305 < 8.196] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)A476.CB) [> 3.418 = 5.698 < 7.407] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)F453.CB) [> 4.218 = 7.030 < 9.139] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)S449.CB) [> 1.922 = 3.203 < 4.163] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)L583.CB) [> 2.773 = 4.621 < 6.007] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)K582.CB) [> 3.537 = 5.894 < 7.663] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)I551.CB) [> 2.752 = 4.587 < 5.963] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)I550.CB) [> 4.309 = 7.181 < 9.335] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)R474.CB) [> 3.333 = 5.555 < 7.221] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)P451.CB) [> 4.616 = 7.694 < 10.002] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)R474.CB) [> 4.777 = 7.962 < 10.351] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)F460.CB) [> 4.568 = 7.613 < 9.897] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)D434.CB) [> 4.307 = 7.179 < 9.332] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)A553.CB) [> 3.404 = 5.673 < 7.375] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)I538.CB) [> 4.134 = 6.890 < 8.958] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)A536.CB) [> 3.686 = 6.143 < 7.985] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)D480.CB) [> 3.915 = 6.524 < 8.482] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)A476.CB) [> 4.412 = 7.354 < 9.560] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)V442.CB) [> 4.716 = 7.860 < 10.218] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)P451.CB) [> 4.611 = 7.684 < 9.990] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)M450.CB) [> 3.413 = 5.689 < 7.396] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)M450.CB) [> 3.928 = 6.547 < 8.511] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V397.CB, (T0547)T409.CB) [> 4.577 = 7.628 < 9.917] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)D401.CB) [> 4.293 = 7.154 < 9.300] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)A427.CB) [> 3.693 = 6.154 < 8.000] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S387.CB, (T0547)L429.CB) [> 4.196 = 6.994 < 9.092] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)S403.CB) [> 4.425 = 7.375 < 9.587] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)W454.CB) [> 3.099 = 5.164 < 6.714] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)P451.CB) [> 4.682 = 7.804 < 10.145] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)P451.CB) [> 4.442 = 7.403 < 9.624] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)W454.CB) [> 3.249 = 5.416 < 7.041] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q424.CB, (T0547)I551.CB) [> 4.615 = 7.691 < 9.998] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q424.CB, (T0547)W454.CB) [> 3.268 = 5.447 < 7.081] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)M450.CB) [> 3.412 = 5.687 < 7.393] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)S445.CB) [> 4.689 = 7.815 < 10.160] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)A553.CB) [> 3.470 = 5.783 < 7.518] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)E552.CB) [> 4.016 = 6.694 < 8.702] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)F460.CB) [> 3.086 = 5.143 < 6.686] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)A553.CB) [> 3.545 = 5.908 < 7.681] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)F460.CB) [> 3.718 = 6.196 < 8.055] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)F460.CB) [> 3.736 = 6.227 < 8.096] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)A553.CB) [> 4.364 = 7.273 < 9.455] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)E548.CB) [> 4.637 = 7.729 < 10.047] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)A536.CB) [> 3.793 = 6.321 < 8.217] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)A553.CB) [> 4.469 = 7.449 < 9.684] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)E552.CB) [> 4.712 = 7.854 < 10.210] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I551.CB) [> 2.821 = 4.701 < 6.112] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I550.CB) [> 3.534 = 5.889 < 7.656] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)E552.CB) [> 3.687 = 6.145 < 7.989] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)I551.CB) [> 4.225 = 7.042 < 9.155] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)I550.CB) [> 3.110 = 5.183 < 6.737] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)S539.CB) [> 4.444 = 7.407 < 9.629] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)I538.CB) [> 3.510 = 5.849 < 7.604] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N508.CB, (T0547)E552.CB) [> 4.098 = 6.830 < 8.879] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)L560.CB) [> 4.081 = 6.802 < 8.842] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)T559.CB) [> 2.673 = 4.455 < 5.792] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)D558.CB) [> 3.130 = 5.217 < 6.783] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)L557.CB) [> 3.217 = 5.362 < 6.971] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)A553.CB) [> 4.173 = 6.955 < 9.041] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)E546.CB) [> 4.220 = 7.033 < 9.143] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)L583.CB) [> 2.754 = 4.589 < 5.966] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)K582.CB) [> 3.950 = 6.583 < 8.558] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)E546.CB) [> 3.920 = 6.533 < 8.494] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)E548.CB) [> 4.040 = 6.734 < 8.754] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)K543.CB) [> 4.689 = 7.815 < 10.160] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)E542.CB) [> 3.154 = 5.257 < 6.834] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)I550.CB) [> 4.178 = 6.963 < 9.052] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)E548.CB) [> 3.136 = 5.227 < 6.795] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)Y509.CB) [> 3.654 = 6.091 < 7.918] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)N508.CB) [> 3.460 = 5.767 < 7.497] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E457.CB, (T0547)A553.CB) [> 3.436 = 5.726 < 7.444] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G455.CA, (T0547)D469.CB) [> 3.624 = 6.040 < 7.852] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)E470.CB) [> 3.488 = 5.814 < 7.558] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)D469.CB) [> 4.547 = 7.578 < 9.851] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)R467.CB) [> 4.295 = 7.158 < 9.306] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)R467.CB) [> 3.756 = 6.260 < 8.138] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)S445.CB) [> 2.741 = 4.568 < 5.938] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)Q448.CB) [> 3.231 = 5.385 < 7.000] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)F447.CB) [> 4.154 = 6.923 < 9.000] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)S449.CB) [> 4.638 = 7.730 < 10.049] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)L563.CB) [> 4.558 = 7.597 < 9.876] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)L560.CB) [> 3.092 = 5.154 < 6.700] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)T559.CB) [> 3.063 = 5.105 < 6.636] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)L583.CB) [> 2.751 = 4.585 < 5.961] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)K582.CB) [> 3.766 = 6.277 < 8.160] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)G549.CA) [> 3.494 = 5.824 < 7.571] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)V547.CB) [> 3.961 = 6.602 < 8.582] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)I538.CB) [> 4.154 = 6.923 < 9.000] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)I537.CB) [> 3.363 = 5.605 < 7.287] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)A553.CB) [> 4.527 = 7.544 < 9.807] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)E552.CB) [> 3.679 = 6.131 < 7.970] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)I551.CB) [> 4.194 = 6.989 < 9.086] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)I550.CB) [> 3.061 = 5.102 < 6.633] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)G512.CA) [> 2.797 = 4.661 < 6.059] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)G512.CA) [> 4.793 = 7.989 < 10.385] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)A553.CB) [> 3.810 = 6.350 < 8.254] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)G512.CA) [> 3.134 = 5.224 < 6.791] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)N404.CB) [> 4.129 = 6.881 < 8.946] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)H410.CB) [> 4.481 = 7.468 < 9.708] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)L408.CB) [> 2.674 = 4.457 < 5.794] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)I407.CB) [> 4.101 = 6.834 < 8.885] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)H410.CB) [> 2.138 = 3.564 < 4.633] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)L408.CB) [> 4.698 = 7.831 < 10.180] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)I407.CB) [> 4.672 = 7.787 < 10.123] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)I412.CB) [> 2.683 = 4.472 < 5.814] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)L411.CB) [> 3.622 = 6.037 < 7.848] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)H410.CB) [> 3.008 = 5.013 < 6.517] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)T409.CB) [> 4.732 = 7.886 < 10.252] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)H379.CB) [> 2.729 = 4.548 < 5.912] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)L378.CB) [> 4.573 = 7.622 < 9.908] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)I412.CB) [> 4.754 = 7.924 < 10.301] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)F460.CB) [> 4.758 = 7.930 < 10.309] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)L456.CB) [> 4.775 = 7.958 < 10.346] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)I432.CB) [> 3.021 = 5.035 < 6.545] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)L420.CB) [> 4.009 = 6.682 < 8.687] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)N459.CB) [> 3.767 = 6.279 < 8.162] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)H384.CB) [> 3.332 = 5.553 < 7.219] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q354.CB, (T0547)Y363.CB) [> 3.192 = 5.320 < 6.916] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)T534.CB) [> 3.796 = 6.327 < 8.225] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)K423.CB) [> 4.579 = 7.632 < 9.922] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)R474.CB) [> 3.799 = 6.332 < 8.232] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)I432.CB) [> 4.318 = 7.197 < 9.356] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)L408.CB) [> 4.663 = 7.772 < 10.103] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)I407.CB) [> 4.297 = 7.162 < 9.310] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)E406.CB) [> 3.535 = 5.891 < 7.658] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)H379.CB) [> 4.327 = 7.211 < 9.375] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)R474.CB) [> 4.796 = 7.993 < 10.391] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)A431.CB) [> 4.642 = 7.736 < 10.057] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)D393.CB) [> 4.466 = 7.444 < 9.677] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)T390.CB) [> 4.333 = 7.222 < 9.388] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)P371.CB) [> 4.753 = 7.922 < 10.299] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)Q354.CB) [> 4.782 = 7.971 < 10.362] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)A374.CB) [> 4.602 = 7.670 < 9.970] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)T534.CB) [> 4.602 = 7.669 < 9.970] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)R474.CB) [> 4.014 = 6.689 < 8.696] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)M450.CB) [> 4.015 = 6.691 < 8.698] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I432.CB) [> 4.752 = 7.920 < 10.296] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)F392.CB) [> 4.754 = 7.924 < 10.301] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)S368.CB) [> 4.554 = 7.590 < 9.867] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)M450.CB) [> 4.793 = 7.989 < 10.386] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)S372.CB) [> 4.666 = 7.776 < 10.109] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)K348.CB) [> 4.292 = 7.153 < 9.299] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)L411.CB) [> 3.545 = 5.908 < 7.680] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)H410.CB) [> 4.462 = 7.437 < 9.668] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)T409.CB) [> 3.048 = 5.080 < 6.604] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)L375.CB) [> 4.449 = 7.415 < 9.640] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)T413.CB) [> 4.178 = 6.963 < 9.052] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)I412.CB) [> 2.629 = 4.381 < 5.696] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)L411.CB) [> 3.542 = 5.904 < 7.675] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)V397.CB) [> 4.567 = 7.611 < 9.895] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E343.CB, (T0547)G395.CA) [> 3.325 = 5.542 < 7.204] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E343.CB, (T0547)L394.CB) [> 3.705 = 6.176 < 8.029] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E343.CB, (T0547)D393.CB) [> 3.870 = 6.450 < 8.385] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)R402.CB) [> 4.313 = 7.189 < 9.346] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)D401.CB) [> 2.575 = 4.292 < 5.580] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)D398.CB) [> 2.345 = 3.908 < 5.081] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)V397.CB) [> 4.788 = 7.981 < 10.375] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)G395.CA) [> 4.281 = 7.135 < 9.276] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)L394.CB) [> 4.725 = 7.875 < 10.238] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q342.CB, (T0547)D380.CB) [> 4.506 = 7.510 < 9.763] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)V397.CB) [> 3.448 = 5.747 < 7.471] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)T390.CB) [> 4.075 = 6.791 < 8.828] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)I388.CB) [> 4.347 = 7.246 < 9.419] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)P451.CB) [> 4.767 = 7.945 < 10.328] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)M450.CB) [> 4.763 = 7.939 < 10.320] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)I407.CB) [> 4.417 = 7.361 < 9.570] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)E406.CB) [> 4.060 = 6.767 < 8.797] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)V397.CB) [> 4.626 = 7.711 < 10.024] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)L394.CB) [> 4.669 = 7.781 < 10.116] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)I388.CB) [> 4.068 = 6.780 < 8.814] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)D452.CB) [> 3.188 = 5.314 < 6.908] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)P451.CB) [> 1.794 = 2.990 < 3.886] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)M450.CB) [> 3.192 = 5.320 < 6.916] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)I417.CB) [> 4.694 = 7.824 < 10.171] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)D401.CB) [> 4.451 = 7.418 < 9.643] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)Q400.CB) [> 3.982 = 6.636 < 8.627] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)L399.CB) [> 1.841 = 3.068 < 3.988] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)R402.CB) [> 4.435 = 7.391 < 9.608] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)R402.CB) [> 4.386 = 7.311 < 9.504] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D380.CB, (T0547)D398.CB) [> 3.058 = 5.096 < 6.625] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)L411.CB) [> 4.525 = 7.541 < 9.803] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)D393.CB) [> 4.534 = 7.557 < 9.824] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)E406.CB) [> 3.330 = 5.550 < 7.215] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)N404.CB) [> 4.662 = 7.770 < 10.101] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)L399.CB) [> 2.059 = 3.432 < 4.461] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)T409.CB) [> 3.985 = 6.642 < 8.634] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N373.CB, (T0547)H410.CB) [> 4.291 = 7.152 < 9.297] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N373.CB, (T0547)T409.CB) [> 4.242 = 7.070 < 9.191] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N373.CB, (T0547)L399.CB) [> 4.404 = 7.340 < 9.543] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)L399.CB) [> 3.450 = 5.749 < 7.474] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)Y396.CB) [> 4.282 = 7.137 < 9.279] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)Y545.CB) [> 4.760 = 7.934 < 10.314] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)I407.CB) [> 3.042 = 5.070 < 6.591] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)M450.CB) [> 3.410 = 5.683 < 7.388] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)A416.CB) [> 4.241 = 7.068 < 9.189] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)H384.CB) [> 4.641 = 7.734 < 10.054] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)N459.CB) [> 3.324 = 5.539 < 7.201] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)Q458.CB) [> 4.047 = 6.745 < 8.768] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)D452.CB) [> 4.788 = 7.981 < 10.375] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)L429.CB) [> 4.770 = 7.949 < 10.334] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)D428.CB) [> 4.702 = 7.836 < 10.187] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)L411.CB) [> 4.424 = 7.373 < 9.585] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)T534.CB) [> 3.035 = 5.058 < 6.575] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)R474.CB) [> 4.010 = 6.684 < 8.689] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)M450.CB) [> 4.007 = 6.678 < 8.682] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)A431.CB) [> 2.923 = 4.872 < 6.333] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)Q424.CB) [> 4.766 = 7.943 < 10.325] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)T390.CB) [> 4.714 = 7.857 < 10.214] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)H384.CB) [> 3.937 = 6.562 < 8.530] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)I369.CB) [> 3.260 = 5.433 < 7.063] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)R474.CB) [> 4.582 = 7.636 < 9.927] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)L399.CB) [> 3.642 = 6.069 < 7.890] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)L389.CB) [> 4.314 = 7.189 < 9.346] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)Y396.CB) [> 4.696 = 7.827 < 10.175] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)L394.CB) [> 4.490 = 7.483 < 9.727] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)D393.CB) [> 4.635 = 7.725 < 10.043] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)L391.CB) [> 4.490 = 7.483 < 9.727] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)L456.CB) [> 2.351 = 3.918 < 5.094] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)G455.CA) [> 2.945 = 4.908 < 6.380] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)F453.CB) [> 3.966 = 6.611 < 8.594] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)D452.CB) [> 2.610 = 4.351 < 5.656] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)P451.CB) [> 3.843 = 6.406 < 8.327] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)M450.CB) [> 2.617 = 4.362 < 5.671] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)D383.CB) [> 4.767 = 7.945 < 10.328] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)L456.CB) [> 4.797 = 7.995 < 10.394] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)G455.CA) [> 3.515 = 5.858 < 7.616] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)D452.CB) [> 3.678 = 6.129 < 7.968] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L419.CB) [> 3.985 = 6.641 < 8.633] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)I412.CB) [> 4.743 = 7.904 < 10.276] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)Q424.CB) [> 4.075 = 6.791 < 8.828] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)K423.CB) [> 3.823 = 6.371 < 8.282] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)I382.CB) [> 4.758 = 7.929 < 10.308] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)Q424.CB) [> 4.032 = 6.720 < 8.736] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)K423.CB) [> 4.134 = 6.891 < 8.958] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)L420.CB) [> 4.078 = 6.797 < 8.836] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)L385.CB) [> 3.560 = 5.933 < 7.713] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)S381.CB) [> 3.479 = 5.799 < 7.538] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)I382.CB) [> 4.302 = 7.170 < 9.321] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)D383.CB) [> 3.832 = 6.386 < 8.302] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)L385.CB) [> 4.456 = 7.426 < 9.654] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)Q424.CB) [> 4.087 = 6.811 < 8.855] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)K423.CB) [> 3.872 = 6.453 < 8.388] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)K423.CB) [> 4.690 = 7.817 < 10.162] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)G421.CA) [> 4.778 = 7.963 < 10.352] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)A431.CB) [> 3.502 = 5.836 < 7.587] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)P426.CB) [> 3.922 = 6.537 < 8.498] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)T559.CB) [> 4.087 = 6.811 < 8.854] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)G549.CA) [> 4.052 = 6.753 < 8.779] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)L560.CB) [> 3.780 = 6.300 < 8.191] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)T559.CB) [> 3.395 = 5.659 < 7.356] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L446.CB) [> 4.446 = 7.411 < 9.634] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E406.CB, (T0547)N541.CB) [> 4.643 = 7.739 < 10.061] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A405.CB, (T0547)N541.CB) [> 4.383 = 7.305 < 9.496] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V397.CB, (T0547)E406.CB) [> 4.697 = 7.828 < 10.177] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)E535.CB) [> 4.649 = 7.748 < 10.073] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)L408.CB) [> 4.684 = 7.807 < 10.150] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L394.CB, (T0547)E406.CB) [> 4.671 = 7.785 < 10.120] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L394.CB, (T0547)S403.CB) [> 4.270 = 7.117 < 9.252] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)I407.CB) [> 4.654 = 7.757 < 10.084] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)L408.CB) [> 4.790 = 7.983 < 10.378] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)K415.CB) [> 3.593 = 5.988 < 7.784] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)K423.CB) [> 4.071 = 6.784 < 8.819] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I306.CB, (T0547)E320.CB) [> 3.982 = 6.636 < 8.627] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)R323.CB) [> 2.902 = 4.836 < 6.287] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)G322.CA) [> 3.532 = 5.887 < 7.653] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)E320.CB) [> 3.828 = 6.380 < 8.294] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E294.CB, (T0547)P315.CB) [> 4.684 = 7.807 < 10.149] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)A307.CB) [> 4.171 = 6.951 < 9.037] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)I306.CB) [> 3.144 = 5.240 < 6.811] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E285.CB, (T0547)P315.CB) [> 3.954 = 6.590 < 8.567] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)P315.CB) [> 4.722 = 7.870 < 10.231] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)K264.CB) [> 2.976 = 4.959 < 6.447] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)A268.CB) [> 4.631 = 7.718 < 10.034] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)N305.CB) [> 4.738 = 7.897 < 10.266] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)S287.CB) [> 3.668 = 6.113 < 7.947] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)G143.CA) [> 4.621 = 7.701 < 10.011] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)S287.CB) [> 4.725 = 7.875 < 10.237] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)T559.CB) [> 4.740 = 7.900 < 10.270] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)Q433.CB) [> 4.635 = 7.724 < 10.042] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)I432.CB) [> 4.602 = 7.670 < 9.971] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)A431.CB) [> 3.607 = 6.012 < 7.815] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)E561.CB) [> 4.698 = 7.830 < 10.179] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)L560.CB) [> 4.601 = 7.668 < 9.969] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)F447.CB) [> 4.625 = 7.708 < 10.020] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)V397.CB) [> 4.453 = 7.421 < 9.647] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)L394.CB) [> 4.481 = 7.468 < 9.709] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)F392.CB) [> 4.516 = 7.527 < 9.786] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I556.CB) [> 4.627 = 7.712 < 10.026] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L420.CB) [> 4.138 = 6.896 < 8.965] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)I551.CB) [> 4.740 = 7.900 < 10.270] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)I550.CB) [> 4.677 = 7.795 < 10.134] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I432.CB) [> 3.603 = 6.005 < 7.806] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I306.CB, (T0547)R323.CB) [> 4.423 = 7.372 < 9.583] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)N289.CB) [> 4.304 = 7.174 < 9.326] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)N289.CB) [> 2.800 = 4.666 < 6.066] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)N289.CB) [> 3.601 = 6.002 < 7.802] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)R288.CB) [> 2.972 = 4.953 < 6.439] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)S287.CB) [> 3.735 = 6.225 < 8.093] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)S287.CB) [> 3.040 = 5.067 < 6.588] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)S287.CB) [> 2.776 = 4.626 < 6.014] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)K286.CB) [> 2.610 = 4.351 < 5.656] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)E285.CB) [> 3.849 = 6.414 < 8.338] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)E285.CB) [> 4.094 = 6.824 < 8.871] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)A251.CB) [> 3.344 = 5.573 < 7.245] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)A247.CB) [> 4.192 = 6.986 < 9.082] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)T207.CB) [> 4.313 = 7.188 < 9.344] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)N289.CB) [> 4.712 = 7.854 < 10.210] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)K245.CB) [> 4.435 = 7.391 < 9.608] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R288.CB, (T0547)I319.CB) [> 3.072 = 5.120 < 6.655] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R288.CB, (T0547)I317.CB) [> 2.501 = 4.168 < 5.418] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R288.CB, (T0547)D316.CB) [> 4.153 = 6.922 < 8.998] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)I317.CB) [> 4.423 = 7.371 < 9.583] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)D316.CB) [> 3.656 = 6.093 < 7.920] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K286.CB, (T0547)I317.CB) [> 3.161 = 5.268 < 6.849] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E285.CB, (T0547)D316.CB) [> 4.097 = 6.829 < 8.878] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)T291.CB) [> 4.736 = 7.893 < 10.262] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)S287.CB) [> 3.557 = 5.929 < 7.708] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)K286.CB) [> 4.795 = 7.992 < 10.389] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)E285.CB) [> 3.792 = 6.320 < 8.217] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)E285.CB) [> 3.281 = 5.469 < 7.110] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)S287.CB) [> 4.503 = 7.505 < 9.757] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)L266.CB) [> 3.552 = 5.920 < 7.696] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)N289.CB) [> 3.719 = 6.198 < 8.058] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)N289.CB) [> 4.231 = 7.052 < 9.168] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)N289.CB) [> 4.573 = 7.621 < 9.907] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)N289.CB) [> 3.736 = 6.227 < 8.096] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)E546.CB) [> 4.374 = 7.289 < 9.476] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)Q554.CB) [> 3.337 = 5.561 < 7.229] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)A553.CB) [> 2.705 = 4.509 < 5.861] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)G549.CA) [> 4.323 = 7.205 < 9.367] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)V547.CB) [> 4.169 = 6.949 < 9.034] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)E546.CB) [> 4.781 = 7.968 < 10.358] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)Q554.CB) [> 3.739 = 6.232 < 8.101] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)D558.CB) [> 4.624 = 7.707 < 10.019] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)Q554.CB) [> 3.397 = 5.662 < 7.361] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)L560.CB) [> 3.455 = 5.758 < 7.486] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)D558.CB) [> 4.405 = 7.341 < 9.543] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D428.CB, (T0547)L557.CB) [> 3.326 = 5.543 < 7.205] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)D558.CB) [> 3.406 = 5.676 < 7.379] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)L557.CB) [> 2.840 = 4.734 < 6.154] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)D558.CB) [> 3.309 = 5.516 < 7.170] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)T559.CB) [> 3.469 = 5.781 < 7.515] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)D558.CB) [> 4.507 = 7.512 < 9.766] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G252.CA) [> 4.711 = 7.851 < 10.207] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R173.CB, (T0547)L224.CB) [> 4.728 = 7.880 < 10.244] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)R173.CB) [> 4.240 = 7.067 < 9.187] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N141.CB, (T0547)R173.CB) [> 3.767 = 6.279 < 8.163] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)E164.CB) [> 4.572 = 7.620 < 9.906] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K102.CB, (T0547)G126.CA) [> 4.608 = 7.680 < 9.984] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)H568.CB) [> 4.384 = 7.307 < 9.499] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)R288.CB) [> 4.102 = 6.836 < 8.887] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)E552.CB) [> 4.632 = 7.720 < 10.036] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)E552.CB) [> 4.086 = 6.810 < 8.853] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)V397.CB) [> 3.856 = 6.427 < 8.355] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)R439.CB) [> 4.733 = 7.889 < 10.255] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L446.CB, (T0547)A536.CB) [> 4.446 = 7.411 < 9.634] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)E542.CB) [> 4.699 = 7.831 < 10.181] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)V522.CB) [> 2.824 = 4.706 < 6.118] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)D393.CB) [> 4.346 = 7.243 < 9.415] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)T390.CB) [> 4.231 = 7.051 < 9.167] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)Y377.CB) [> 4.771 = 7.951 < 10.337] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)V522.CB) [> 3.562 = 5.936 < 7.717] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)Y519.CB) [> 3.921 = 6.535 < 8.496] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)Y377.CB) [> 2.522 = 4.204 < 5.465] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)G524.CA) [> 4.756 = 7.927 < 10.305] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)L523.CB) [> 2.861 = 4.768 < 6.198] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)V522.CB) [> 4.581 = 7.634 < 9.925] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L523.CB) [> 3.051 = 5.086 < 6.611] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)Y519.CB) [> 4.205 = 7.009 < 9.112] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)Y377.CB) [> 4.611 = 7.685 < 9.991] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)I478.CB) [> 3.088 = 5.146 < 6.690] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)D393.CB) [> 4.566 = 7.610 < 9.893] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)Y396.CB) [> 3.690 = 6.150 < 7.995] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)L497.CB) [> 4.256 = 7.094 < 9.222] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)L497.CB) [> 3.189 = 5.314 < 6.909] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D398.CB, (T0547)L446.CB) [> 4.480 = 7.467 < 9.707] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V397.CB, (T0547)L446.CB) [> 4.269 = 7.116 < 9.250] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)I478.CB) [> 3.933 = 6.555 < 8.521] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)S477.CB) [> 4.559 = 7.599 < 9.878] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S381.CB, (T0547)L419.CB) [> 4.685 = 7.808 < 10.151] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)I417.CB) [> 4.499 = 7.498 < 9.747] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)K423.CB) [> 4.749 = 7.916 < 10.291] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)L419.CB) [> 4.172 = 6.953 < 9.039] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)H410.CB) [> 4.164 = 6.940 < 9.022] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)V522.CB) [> 3.736 = 6.227 < 8.095] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)Y519.CB) [> 4.020 = 6.700 < 8.710] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)A518.CB) [> 4.787 = 7.979 < 10.372] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)E285.CB) [> 4.767 = 7.945 < 10.329] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E240.CB, (T0547)K310.CB) [> 4.490 = 7.483 < 9.727] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E240.CB, (T0547)Q309.CB) [> 4.501 = 7.502 < 9.752] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E240.CB, (T0547)F282.CB) [> 4.492 = 7.487 < 9.733] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E240.CB, (T0547)Y279.CB) [> 4.473 = 7.455 < 9.692] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N216.CB, (T0547)G262.CA) [> 4.415 = 7.358 < 9.565] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)E225.CB) [> 3.842 = 6.403 < 8.323] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)L224.CB) [> 3.916 = 6.527 < 8.486] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)V191.CB) [> 4.786 = 7.977 < 10.370] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)K177.CB) [> 4.667 = 7.778 < 10.112] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)H151.CB) [> 4.358 = 7.263 < 9.442] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)G150.CA) [> 3.856 = 6.427 < 8.355] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)M149.CB) [> 4.483 = 7.472 < 9.713] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)H151.CB) [> 2.376 = 3.960 < 5.148] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)G150.CA) [> 4.128 = 6.880 < 8.944] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)M149.CB) [> 3.590 = 5.983 < 7.777] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)E148.CB) [> 4.370 = 7.283 < 9.467] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)V504.CB) [> 3.731 = 6.218 < 8.083] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)V504.CB) [> 4.036 = 6.727 < 8.745] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)E535.CB) [> 4.486 = 7.477 < 9.720] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)I540.CB) [> 4.760 = 7.933 < 10.312] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)N541.CB) [> 4.550 = 7.584 < 9.859] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)E542.CB) [> 4.365 = 7.275 < 9.457] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)N541.CB) [> 2.452 = 4.087 < 5.313] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)I540.CB) [> 4.140 = 6.901 < 8.971] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)N541.CB) [> 4.028 = 6.713 < 8.727] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)S321.CB) [> 4.603 = 7.671 < 9.972] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E294.CB, (T0547)L303.CB) [> 4.584 = 7.640 < 9.932] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R293.CB, (T0547)L303.CB) [> 3.916 = 6.527 < 8.485] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)L303.CB) [> 3.732 = 6.219 < 8.085] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S287.CB, (T0547)R323.CB) [> 4.708 = 7.847 < 10.201] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)L560.CB) [> 3.371 = 5.618 < 7.303] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)T534.CB) [> 3.196 = 5.327 < 6.926] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)F498.CB) [> 2.710 = 4.517 < 5.873] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)F498.CB) [> 4.650 = 7.749 < 10.074] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)S477.CB) [> 3.326 = 5.544 < 7.207] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S449.CB, (T0547)S477.CB) [> 3.573 = 5.954 < 7.741] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)S477.CB) [> 2.759 = 4.598 < 5.978] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)S477.CB) [> 4.374 = 7.290 < 9.478] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L446.CB, (T0547)I478.CB) [> 4.045 = 6.742 < 8.765] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S445.CB, (T0547)D480.CB) [> 2.842 = 4.736 < 6.157] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)G322.CA) [> 4.442 = 7.404 < 9.625] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)A326.CB) [> 4.107 = 6.846 < 8.899] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)V325.CB) [> 3.690 = 6.150 < 7.995] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N61.CB, (T0547)G322.CA) [> 4.591 = 7.651 < 9.947] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E542.CB, (T0547)S555.CB) [> 2.976 = 4.961 < 6.449] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N541.CB, (T0547)S555.CB) [> 4.190 = 6.984 < 9.079] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I540.CB, (T0547)S555.CB) [> 3.918 = 6.530 < 8.489] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)Q554.CB) [> 2.788 = 4.646 < 6.040] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)T559.CB) [> 3.341 = 5.568 < 7.238] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)D558.CB) [> 4.228 = 7.047 < 9.161] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)I556.CB) [> 2.879 = 4.798 < 6.238] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)S555.CB) [> 3.105 = 5.174 < 6.727] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)Q554.CB) [> 2.650 = 4.416 < 5.741] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)Q554.CB) [> 4.478 = 7.464 < 9.703] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)S477.CB) [> 4.184 = 6.973 < 9.065] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)Y519.CB) [> 4.009 = 6.682 < 8.687] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)D452.CB) [> 3.203 = 5.338 < 6.940] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)D452.CB) [> 3.846 = 6.411 < 8.334] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)D452.CB) [> 2.872 = 4.787 < 6.223] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)D452.CB) [> 3.599 = 5.999 < 7.799] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)D452.CB) [> 3.550 = 5.916 < 7.691] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S445.CB, (T0547)W479.CB) [> 3.905 = 6.508 < 8.461] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S445.CB, (T0547)I478.CB) [> 3.083 = 5.138 < 6.680] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)T482.CB) [> 4.374 = 7.289 < 9.476] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)D501.CB) [> 4.361 = 7.268 < 9.448] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R439.CB, (T0547)G544.CA) [> 4.382 = 7.303 < 9.494] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)E535.CB) [> 4.776 = 7.960 < 10.349] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)T534.CB) [> 3.638 = 6.063 < 7.881] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)V502.CB) [> 3.684 = 6.140 < 7.982] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E438.CB, (T0547)D501.CB) [> 3.272 = 5.454 < 7.090] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)I556.CB) [> 4.507 = 7.512 < 9.765] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)G517.CA) [> 2.710 = 4.516 < 5.871] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)E542.CB) [> 4.433 = 7.389 < 9.606] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)N541.CB) [> 4.488 = 7.481 < 9.725] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)I540.CB) [> 2.309 = 3.849 < 5.004] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)R439.CB) [> 3.341 = 5.568 < 7.238] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)Q437.CB) [> 4.436 = 7.394 < 9.612] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)V436.CB) [> 2.319 = 3.864 < 5.024] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)L49.CB) [> 3.919 = 6.532 < 8.492] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)G549.CA) [> 4.000 = 6.667 < 8.667] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P29.CB, (T0547)I540.CB) [> 4.799 = 7.998 < 10.397] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K28.CB, (T0547)E552.CB) [> 3.579 = 5.965 < 7.755] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K28.CB, (T0547)I551.CB) [> 4.259 = 7.098 < 9.227] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K28.CB, (T0547)I550.CB) [> 3.023 = 5.039 < 6.551] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K28.CB, (T0547)G549.CA) [> 3.807 = 6.345 < 8.249] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K28.CB, (T0547)E435.CB) [> 4.777 = 7.961 < 10.350] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K28.CB, (T0547)H410.CB) [> 4.073 = 6.788 < 8.825] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K28.CB, (T0547)I407.CB) [> 4.709 = 7.849 < 10.204] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K27.CB, (T0547)Y440.CB) [> 4.780 = 7.967 < 10.357] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)V547.CB) [> 4.275 = 7.125 < 9.263] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)P371.CB) [> 4.025 = 6.709 < 8.721] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D33.CB, (T0547)I407.CB) [> 4.702 = 7.837 < 10.188] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D33.CB, (T0547)P371.CB) [> 4.247 = 7.078 < 9.201] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)G549.CA) [> 3.672 = 6.119 < 7.955] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)E548.CB) [> 2.907 = 4.845 < 6.298] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)V547.CB) [> 4.211 = 7.019 < 9.124] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)E546.CB) [> 4.514 = 7.523 < 9.780] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)K370.CB) [> 4.320 = 7.201 < 9.361] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)I550.CB) [> 2.753 = 4.588 < 5.965] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)G549.CA) [> 2.149 = 3.582 < 4.657] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)E548.CB) [> 3.961 = 6.601 < 8.582] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)V547.CB) [> 3.358 = 5.596 < 7.275] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)K370.CB) [> 4.067 = 6.778 < 8.811] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)Y545.CB) [> 4.629 = 7.714 < 10.029] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)G544.CA) [> 4.102 = 6.836 < 8.887] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)K543.CB) [> 3.111 = 5.184 < 6.740] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N18.CB, (T0547)K27.CB) [> 3.389 = 5.648 < 7.342] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K17.CB, (T0547)G92.CA) [> 3.536 = 5.893 < 7.661] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K17.CB, (T0547)P91.CB) [> 3.737 = 6.228 < 8.096] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)A30.CB) [> 4.372 = 7.286 < 9.472] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)K28.CB) [> 4.127 = 6.878 < 8.942] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I15.CB, (T0547)P29.CB) [> 4.627 = 7.711 < 10.025] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)I32.CB) [> 4.604 = 7.673 < 9.974] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)I31.CB) [> 3.250 = 5.417 < 7.042] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)A30.CB) [> 3.911 = 6.518 < 8.474] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)P29.CB) [> 4.233 = 7.055 < 9.171] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)E435.CB) [> 4.738 = 7.896 < 10.265] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y25.CB, (T0547)L557.CB) [> 4.063 = 6.772 < 8.803] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y25.CB, (T0547)I481.CB) [> 2.986 = 4.976 < 6.469] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y25.CB, (T0547)L375.CB) [> 3.555 = 5.925 < 7.703] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)L560.CB) [> 3.144 = 5.240 < 6.812] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)L557.CB) [> 3.361 = 5.601 < 7.282] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)R39.CB) [> 4.333 = 7.221 < 9.387] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)K36.CB) [> 4.453 = 7.422 < 9.649] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)V35.CB) [> 4.004 = 6.673 < 8.675] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)L560.CB) [> 4.678 = 7.796 < 10.135] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)R39.CB) [> 4.193 = 6.988 < 9.085] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)P371.CB) [> 4.512 = 7.520 < 9.776] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)H329.CB) [> 4.764 = 7.940 < 10.322] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N18.CB, (T0547)K28.CB) [> 3.395 = 5.658 < 7.355] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)S475.CB) [> 3.772 = 6.287 < 8.173] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)Q433.CB) [> 3.913 = 6.522 < 8.479] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)E406.CB) [> 3.866 = 6.443 < 8.376] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)F513.CB) [> 4.150 = 6.917 < 8.992] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)S475.CB) [> 3.337 = 5.562 < 7.230] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)Q448.CB) [> 4.662 = 7.770 < 10.101] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)F444.CB) [> 3.816 = 6.360 < 8.268] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)V442.CB) [> 4.731 = 7.886 < 10.251] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)E435.CB) [> 3.637 = 6.061 < 7.879] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)L430.CB) [> 3.262 = 5.436 < 7.067] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)L429.CB) [> 3.823 = 6.372 < 8.283] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D41.CB, (T0547)K352.CB) [> 3.911 = 6.518 < 8.473] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)T409.CB) [> 4.189 = 6.982 < 9.077] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)V331.CB) [> 3.757 = 6.261 < 8.139] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)S539.CB) [> 4.228 = 7.047 < 9.162] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)E438.CB) [> 3.786 = 6.310 < 8.203] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)E435.CB) [> 4.144 = 6.906 < 8.978] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I550.CB) [> 4.338 = 7.230 < 9.399] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)Q448.CB) [> 4.563 = 7.604 < 9.886] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)E435.CB) [> 3.631 = 6.051 < 7.867] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)E535.CB) [> 4.397 = 7.329 < 9.527] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)T534.CB) [> 2.441 = 4.069 < 5.290] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)R474.CB) [> 2.464 = 4.107 < 5.339] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)L583.CB) [> 4.773 = 7.954 < 10.340] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)S475.CB) [> 4.438 = 7.396 < 9.615] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)R474.CB) [> 4.229 = 7.049 < 9.163] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)Q448.CB) [> 4.667 = 7.779 < 10.112] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)F447.CB) [> 4.696 = 7.827 < 10.175] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)Q433.CB) [> 4.177 = 6.962 < 9.051] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)L408.CB) [> 4.714 = 7.857 < 10.214] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E37.CB, (T0547)L49.CB) [> 4.730 = 7.883 < 10.248] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)V547.CB) [> 2.591 = 4.319 < 5.615] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)E546.CB) [> 4.272 = 7.120 < 9.256] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)L54.CB) [> 4.354 = 7.257 < 9.434] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)H53.CB) [> 4.565 = 7.609 < 9.892] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)F51.CB) [> 2.283 = 3.805 < 4.947] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)R50.CB) [> 4.768 = 7.947 < 10.331] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)E546.CB) [> 4.413 = 7.356 < 9.562] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)Y545.CB) [> 4.541 = 7.568 < 9.839] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)K543.CB) [> 4.253 = 7.089 < 9.216] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)I540.CB) [> 4.439 = 7.399 < 9.618] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)S539.CB) [> 3.869 = 6.449 < 8.384] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)L441.CB) [> 4.503 = 7.505 < 9.757] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)R439.CB) [> 4.576 = 7.627 < 9.915] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)V436.CB) [> 4.471 = 7.451 < 9.686] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)F51.CB) [> 4.785 = 7.975 < 10.367] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)P46.CB) [> 4.549 = 7.582 < 9.857] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)A431.CB) [> 4.664 = 7.774 < 10.106] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)P371.CB) [> 4.374 = 7.290 < 9.477] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)K370.CB) [> 4.625 = 7.708 < 10.021] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)Q354.CB) [> 4.509 = 7.514 < 9.769] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)I350.CB) [> 3.656 = 6.094 < 7.922] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)V547.CB) [> 4.164 = 6.941 < 9.023] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)E546.CB) [> 4.578 = 7.630 < 9.920] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)N541.CB) [> 3.713 = 6.188 < 8.044] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)S539.CB) [> 4.452 = 7.419 < 9.645] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)V442.CB) [> 4.064 = 6.773 < 8.805] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)E438.CB) [> 4.764 = 7.940 < 10.322] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E37.CB, (T0547)V547.CB) [> 4.330 = 7.217 < 9.382] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E37.CB, (T0547)E546.CB) [> 2.933 = 4.888 < 6.355] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E37.CB, (T0547)Y545.CB) [> 3.519 = 5.865 < 7.624] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E37.CB, (T0547)G544.CA) [> 4.533 = 7.556 < 9.822] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E37.CB, (T0547)A374.CB) [> 4.165 = 6.942 < 9.025] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E37.CB, (T0547)P371.CB) [> 2.877 = 4.795 < 6.233] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E37.CB, (T0547)V331.CB) [> 4.389 = 7.316 < 9.510] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)A536.CB) [> 3.693 = 6.154 < 8.001] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)Q448.CB) [> 3.510 = 5.851 < 7.606] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V397.CB, (T0547)P451.CB) [> 4.431 = 7.384 < 9.600] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)R439.CB) [> 4.781 = 7.968 < 10.358] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)A416.CB) [> 4.766 = 7.943 < 10.326] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)P426.CB) [> 3.807 = 6.345 < 8.248] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)T390.CB) [> 4.651 = 7.752 < 10.078] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)L385.CB) [> 2.940 = 4.900 < 6.370] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S372.CB, (T0547)D383.CB) [> 4.030 = 6.716 < 8.731] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)A416.CB) [> 4.782 = 7.970 < 10.360] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)I382.CB) [> 3.317 = 5.528 < 7.186] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K370.CB, (T0547)S381.CB) [> 2.475 = 4.125 < 5.363] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)N425.CB) [> 3.796 = 6.327 < 8.225] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)Q424.CB) [> 2.820 = 4.700 < 6.109] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)G421.CA) [> 3.937 = 6.562 < 8.531] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)D383.CB) [> 4.683 = 7.805 < 10.146] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)P426.CB) [> 3.873 = 6.456 < 8.392] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E406.CB, (T0547)D562.CB) [> 3.155 = 5.258 < 6.835] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E406.CB, (T0547)F444.CB) [> 4.494 = 7.489 < 9.736] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A405.CB, (T0547)S445.CB) [> 4.469 = 7.448 < 9.683] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N404.CB, (T0547)A536.CB) [> 4.738 = 7.896 < 10.265] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N404.CB, (T0547)Q448.CB) [> 3.131 = 5.219 < 6.785] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N404.CB, (T0547)F447.CB) [> 3.694 = 6.156 < 8.003] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N404.CB, (T0547)L446.CB) [> 4.131 = 6.885 < 8.950] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N404.CB, (T0547)F444.CB) [> 4.015 = 6.691 < 8.698] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S403.CB, (T0547)L563.CB) [> 3.038 = 5.064 < 6.583] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S403.CB, (T0547)D562.CB) [> 4.746 = 7.910 < 10.283] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S403.CB, (T0547)Q448.CB) [> 3.699 = 6.165 < 8.014] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R402.CB, (T0547)D564.CB) [> 4.761 = 7.936 < 10.316] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R402.CB, (T0547)L563.CB) [> 4.497 = 7.495 < 9.744] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D401.CB, (T0547)Q448.CB) [> 2.809 = 4.681 < 6.085] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D401.CB, (T0547)F447.CB) [> 4.080 = 6.801 < 8.841] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q400.CB, (T0547)L563.CB) [> 4.027 = 6.711 < 8.724] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q400.CB, (T0547)Q448.CB) [> 4.343 = 7.239 < 9.410] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)E438.CB) [> 2.813 = 4.688 < 6.095] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)E438.CB) [> 2.821 = 4.702 < 6.112] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)R439.CB) [> 4.490 = 7.483 < 9.728] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)R439.CB) [> 4.658 = 7.764 < 10.093] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)Q554.CB) [> 4.584 = 7.640 < 9.932] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)Q554.CB) [> 4.793 = 7.989 < 10.386] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)E435.CB) [> 4.767 = 7.945 < 10.328] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)D398.CB) [> 4.766 = 7.943 < 10.326] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)Q554.CB) [> 4.049 = 6.748 < 8.772] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)A553.CB) [> 4.554 = 7.591 < 9.868] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)H568.CB) [> 3.752 = 6.254 < 8.130] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)E320.CB) [> 4.794 = 7.989 < 10.386] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)L313.CB) [> 3.161 = 5.268 < 6.848] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)K310.CB) [> 4.315 = 7.192 < 9.349] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N289.CB, (T0547)I319.CB) [> 4.598 = 7.663 < 9.962] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N289.CB, (T0547)P315.CB) [> 4.673 = 7.789 < 10.125] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N289.CB, (T0547)L313.CB) [> 3.579 = 5.965 < 7.754] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)N425.CB) [> 3.220 = 5.367 < 6.978] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)Q424.CB) [> 3.230 = 5.384 < 6.999] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)L385.CB) [> 4.268 = 7.114 < 9.248] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)I388.CB) [> 3.315 = 5.524 < 7.182] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)S387.CB) [> 3.748 = 6.247 < 8.121] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)E386.CB) [> 4.270 = 7.116 < 9.251] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)N425.CB) [> 3.190 = 5.317 < 6.912] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)D393.CB) [> 4.781 = 7.969 < 10.360] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)I388.CB) [> 3.661 = 6.102 < 7.932] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)P426.CB) [> 4.503 = 7.506 < 9.757] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)N425.CB) [> 4.467 = 7.445 < 9.678] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)T390.CB) [> 4.765 = 7.942 < 10.325] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)S372.CB) [> 3.381 = 5.635 < 7.326] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)N425.CB) [> 4.124 = 6.874 < 8.936] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)S372.CB) [> 3.607 = 6.012 < 7.815] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)E435.CB) [> 4.466 = 7.444 < 9.677] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)E438.CB) [> 4.415 = 7.359 < 9.566] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)D434.CB) [> 4.782 = 7.969 < 10.360] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)V547.CB) [> 4.281 = 7.136 < 9.276] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)Y545.CB) [> 3.515 = 5.858 < 7.616] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)G544.CA) [> 4.518 = 7.531 < 9.790] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)G42.CA) [> 3.889 = 6.482 < 8.426] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)D40.CB) [> 2.440 = 4.066 < 5.286] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)R39.CB) [> 3.413 = 5.689 < 7.396] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)Y43.CB) [> 3.210 = 5.350 < 6.954] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)D40.CB) [> 4.729 = 7.882 < 10.247] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)V547.CB) [> 4.085 = 6.809 < 8.852] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)A569.CB) [> 4.016 = 6.693 < 8.701] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)I32.CB) [> 3.028 = 5.046 < 6.560] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)I31.CB) [> 4.015 = 6.692 < 8.700] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)A330.CB) [> 4.787 = 7.978 < 10.371] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)Q281.CB) [> 4.766 = 7.943 < 10.326] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)S280.CB) [> 4.788 = 7.979 < 10.373] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)V547.CB) [> 4.177 = 6.961 < 9.050] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)E546.CB) [> 4.656 = 7.759 < 10.087] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)I333.CB) [> 3.916 = 6.526 < 8.484] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)L49.CB) [> 3.986 = 6.643 < 8.636] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)L47.CB) [> 4.202 = 7.003 < 9.104] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)Y43.CB) [> 3.279 = 5.464 < 7.104] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)G42.CA) [> 4.358 = 7.263 < 9.442] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)D40.CB) [> 4.386 = 7.311 < 9.504] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)R39.CB) [> 3.194 = 5.323 < 6.919] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)E548.CB) [> 3.790 = 6.316 < 8.211] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)V547.CB) [> 2.480 = 4.134 < 5.374] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)D562.CB) [> 4.776 = 7.960 < 10.348] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)L563.CB) [> 3.779 = 6.298 < 8.187] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)D562.CB) [> 2.803 = 4.671 < 6.072] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)T559.CB) [> 4.067 = 6.778 < 8.811] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)G549.CA) [> 4.609 = 7.682 < 9.987] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E406.CB, (T0547)D564.CB) [> 4.244 = 7.074 < 9.196] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E406.CB, (T0547)L563.CB) [> 3.271 = 5.452 < 7.088] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)I570.CB) [> 2.967 = 4.944 < 6.427] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)I537.CB) [> 4.497 = 7.494 < 9.743] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)A536.CB) [> 3.324 = 5.540 < 7.202] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)E548.CB) [> 4.421 = 7.369 < 9.579] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)V547.CB) [> 3.035 = 5.059 < 6.576] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)E546.CB) [> 4.054 = 6.756 < 8.783] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)Y545.CB) [> 3.098 = 5.163 < 6.712] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)R439.CB) [> 4.755 = 7.924 < 10.302] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)E438.CB) [> 3.007 = 5.012 < 6.516] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)Q554.CB) [> 2.663 = 4.439 < 5.770] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)A553.CB) [> 3.733 = 6.222 < 8.089] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)G549.CA) [> 4.040 = 6.734 < 8.754] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)E548.CB) [> 2.641 = 4.402 < 5.722] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)Y440.CB) [> 4.021 = 6.702 < 8.712] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)R439.CB) [> 3.817 = 6.362 < 8.271] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)E438.CB) [> 4.717 = 7.862 < 10.221] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)L385.CB) [> 4.755 = 7.924 < 10.302] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)E535.CB) [> 3.331 = 5.551 < 7.216] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)T534.CB) [> 4.513 = 7.522 < 9.778] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)V547.CB) [> 3.165 = 5.275 < 6.857] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)Q448.CB) [> 4.688 = 7.813 < 10.157] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)I538.CB) [> 4.746 = 7.910 < 10.282] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)A536.CB) [> 4.472 = 7.454 < 9.690] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)E535.CB) [> 3.354 = 5.590 < 7.266] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)V547.CB) [> 4.590 = 7.650 < 9.945] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)I540.CB) [> 2.907 = 4.844 < 6.298] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E361.CB, (T0547)Q437.CB) [> 4.445 = 7.409 < 9.632] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)V397.CB) [> 4.646 = 7.744 < 10.067] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)A431.CB) [> 4.799 = 7.998 < 10.398] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)I432.CB) [> 4.455 = 7.425 < 9.652] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)E435.CB) [> 2.987 = 4.979 < 6.472] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E376.CB, (T0547)A427.CB) [> 4.793 = 7.989 < 10.385] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)K415.CB) [> 4.463 = 7.439 < 9.671] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)N425.CB) [> 4.467 = 7.445 < 9.679] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)N425.CB) [> 3.780 = 6.300 < 8.191] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R402.CB, (T0547)L430.CB) [> 4.700 = 7.834 < 10.184] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)N425.CB) [> 4.695 = 7.826 < 10.174] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)A427.CB) [> 3.635 = 6.058 < 7.875] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)I333.CB) [> 4.770 = 7.950 < 10.335] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)L337.CB) [> 4.265 = 7.109 < 9.241] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)Q226.CB) [> 4.498 = 7.497 < 9.746] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)G190.CA) [> 2.785 = 4.641 < 6.034] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)L206.CB) [> 4.330 = 7.216 < 9.381] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)E210.CB) [> 3.042 = 5.070 < 6.591] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)L211.CB) [> 3.658 = 6.096 < 7.925] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T207.CB, (T0547)I254.CB) [> 4.698 = 7.831 < 10.180] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)T256.CB) [> 3.916 = 6.526 < 8.484] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)E294.CB) [> 2.371 = 3.952 < 5.138] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)K310.CB) [> 3.528 = 5.880 < 7.644] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)L292.CB) [> 4.684 = 7.806 < 10.148] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)R293.CB) [> 2.177 = 3.628 < 4.717] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)Q309.CB) [> 4.381 = 7.302 < 9.492] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E294.CB, (T0547)I319.CB) [> 4.428 = 7.379 < 9.593] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L560.CB) [> 4.588 = 7.646 < 9.940] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)S539.CB) [> 3.602 = 6.004 < 7.805] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)I540.CB) [> 4.641 = 7.735 < 10.055] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)S539.CB) [> 4.332 = 7.219 < 9.385] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)I540.CB) [> 2.411 = 4.018 < 5.224] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)N541.CB) [> 4.422 = 7.369 < 9.580] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)I538.CB) [> 4.297 = 7.161 < 9.310] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)I540.CB) [> 4.046 = 6.744 < 8.767] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)N541.CB) [> 4.772 = 7.953 < 10.339] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)N541.CB) [> 4.001 = 6.669 < 8.669] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E488.CB, (T0547)A536.CB) [> 4.259 = 7.098 < 9.228] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)T531.CB) [> 4.263 = 7.105 < 9.236] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)L563.CB) [> 3.610 = 6.017 < 7.823] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S490.CB, (T0547)D501.CB) [> 3.819 = 6.365 < 8.274] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S490.CB, (T0547)T531.CB) [> 2.666 = 4.443 < 5.776] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y491.CB, (T0547)T531.CB) [> 4.749 = 7.915 < 10.289] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y491.CB, (T0547)D562.CB) [> 4.444 = 7.406 < 9.628] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y491.CB, (T0547)L563.CB) [> 3.332 = 5.553 < 7.218] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y491.CB, (T0547)D564.CB) [> 4.311 = 7.185 < 9.340] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S492.CB, (T0547)T531.CB) [> 3.437 = 5.728 < 7.446] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S492.CB, (T0547)A536.CB) [> 4.561 = 7.601 < 9.882] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S492.CB, (T0547)T559.CB) [> 4.329 = 7.215 < 9.379] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S492.CB, (T0547)D562.CB) [> 3.851 = 6.418 < 8.343] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S492.CB, (T0547)L563.CB) [> 4.155 = 6.925 < 9.002] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K493.CB, (T0547)T531.CB) [> 3.672 = 6.121 < 7.957] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D494.CB, (T0547)D562.CB) [> 4.785 = 7.975 < 10.367] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K495.CB, (T0547)T559.CB) [> 4.409 = 7.349 < 9.554] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D501.CB, (T0547)T531.CB) [> 3.250 = 5.416 < 7.041] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D501.CB, (T0547)H532.CB) [> 3.996 = 6.660 < 8.659] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D501.CB, (T0547)A536.CB) [> 4.723 = 7.872 < 10.233] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)Q424.CB) [> 4.794 = 7.990 < 10.386] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)N425.CB) [> 4.024 = 6.707 < 8.719] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)P426.CB) [> 3.009 = 5.015 < 6.520] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)Q424.CB) [> 2.937 = 4.895 < 6.363] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)S449.CB) [> 4.585 = 7.642 < 9.935] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)M450.CB) [> 3.651 = 6.085 < 7.911] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)M450.CB) [> 2.901 = 4.835 < 6.285] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)P451.CB) [> 3.743 = 6.238 < 8.110] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)V547.CB) [> 4.264 = 7.106 < 9.238] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)F447.CB) [> 3.829 = 6.382 < 8.297] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)L446.CB) [> 4.111 = 6.852 < 8.908] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)F444.CB) [> 3.937 = 6.561 < 8.529] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)D558.CB) [> 4.793 = 7.988 < 10.384] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)N541.CB) [> 3.710 = 6.184 < 8.039] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q437.CB, (T0547)Q554.CB) [> 3.449 = 5.748 < 7.472] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)D558.CB) [> 4.466 = 7.443 < 9.675] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)I551.CB) [> 4.573 = 7.621 < 9.908] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)E546.CB) [> 4.668 = 7.779 < 10.113] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)Y545.CB) [> 3.593 = 5.989 < 7.785] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)I540.CB) [> 3.855 = 6.425 < 8.352] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V436.CB, (T0547)I538.CB) [> 4.547 = 7.579 < 9.852] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E435.CB, (T0547)Q554.CB) [> 3.224 = 5.373 < 6.985] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E435.CB, (T0547)I551.CB) [> 2.277 = 3.795 < 4.933] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E435.CB, (T0547)G549.CA) [> 4.666 = 7.777 < 10.110] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D434.CB, (T0547)E546.CB) [> 4.130 = 6.883 < 8.948] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D434.CB, (T0547)Y545.CB) [> 3.401 = 5.668 < 7.369] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)L557.CB) [> 4.798 = 7.996 < 10.395] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)V331.CB) [> 4.288 = 7.147 < 9.291] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)V436.CB) [> 3.173 = 5.289 < 6.876] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E26.CB, (T0547)A374.CB) [> 4.586 = 7.644 < 9.937] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)L408.CB) [> 3.643 = 6.072 < 7.894] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)H410.CB) [> 3.825 = 6.376 < 8.288] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)D41.CB) [> 3.970 = 6.616 < 8.601] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)L408.CB) [> 3.810 = 6.350 < 8.255] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D33.CB, (T0547)G42.CA) [> 4.134 = 6.891 < 8.958] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)D434.CB) [> 4.062 = 6.771 < 8.802] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)L408.CB) [> 3.369 = 5.615 < 7.300] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)N373.CB) [> 4.708 = 7.846 < 10.200] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)T534.CB) [> 3.108 = 5.180 < 6.734] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)F51.CB) [> 2.986 = 4.977 < 6.470] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)S372.CB) [> 2.586 = 4.310 < 5.602] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)K370.CB) [> 4.400 = 7.333 < 9.533] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)N328.CB) [> 4.565 = 7.609 < 9.891] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)N284.CB) [> 4.276 = 7.127 < 9.265] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)K283.CB) [> 4.509 = 7.516 < 9.770] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)Q281.CB) [> 4.208 = 7.013 < 9.118] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)E278.CB) [> 2.781 = 4.635 < 6.025] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)K582.CB) [> 3.550 = 5.917 < 7.693] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)V547.CB) [> 3.849 = 6.415 < 8.340] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)V584.CB) [> 4.753 = 7.922 < 10.299] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)L583.CB) [> 3.833 = 6.388 < 8.304] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)L583.CB) [> 4.198 = 6.997 < 9.096] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)T534.CB) [> 4.718 = 7.864 < 10.223] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A427.CB, (T0547)P533.CB) [> 3.240 = 5.400 < 7.020] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)Q588.CB) [> 3.803 = 6.339 < 8.240] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)N585.CB) [> 3.764 = 6.273 < 8.155] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)L583.CB) [> 3.842 = 6.404 < 8.325] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)P533.CB) [> 4.571 = 7.619 < 9.904] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)P533.CB) [> 4.698 = 7.830 < 10.179] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)T534.CB) [> 3.450 = 5.750 < 7.475] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)P533.CB) [> 4.010 = 6.683 < 8.688] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)P533.CB) [> 2.499 = 4.166 < 5.415] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)E240.CB) [> 4.723 = 7.872 < 10.233] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K286.CB, (T0547)D298.CB) [> 4.787 = 7.979 < 10.373] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)P533.CB) [> 4.413 = 7.355 < 9.561] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K353.CB, (T0547)P533.CB) [> 4.255 = 7.092 < 9.220] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)P533.CB) [> 3.123 = 5.206 < 6.767] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D364.CB, (T0547)L394.CB) [> 4.758 = 7.931 < 10.310] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)L399.CB) [> 4.602 = 7.670 < 9.971] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S368.CB, (T0547)L399.CB) [> 4.776 = 7.960 < 10.349] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)P533.CB) [> 4.553 = 7.589 < 9.866] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)N585.CB) [> 2.796 = 4.660 < 6.058] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)I478.CB) [> 2.875 = 4.791 < 6.229] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)S477.CB) [> 4.488 = 7.480 < 9.724] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)Q588.CB) [> 4.146 = 6.911 < 8.984] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)K587.CB) [> 4.649 = 7.749 < 10.074] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)Q588.CB) [> 1.921 = 3.201 < 4.162] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H53.CB, (T0547)K589.CB) [> 4.754 = 7.924 < 10.301] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)I570.CB) [> 2.918 = 4.864 < 6.323] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)Q588.CB) [> 2.899 = 4.831 < 6.281] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)H591.CB) [> 3.162 = 5.269 < 6.850] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K57.CB, (T0547)I570.CB) [> 4.655 = 7.758 < 10.085] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K57.CB, (T0547)L574.CB) [> 4.655 = 7.759 < 10.087] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K57.CB, (T0547)Q588.CB) [> 4.664 = 7.773 < 10.105] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)F282.CB) [> 4.732 = 7.886 < 10.252] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)G92.CA) [> 4.411 = 7.352 < 9.558] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)S475.CB) [> 4.367 = 7.279 < 9.463] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)A476.CB) [> 4.220 = 7.033 < 9.143] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)S477.CB) [> 3.253 = 5.422 < 7.049] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)H568.CB) [> 3.611 = 6.018 < 7.824] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)F514.CB) [> 4.564 = 7.607 < 9.890] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)L515.CB) [> 3.612 = 6.020 < 7.826] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)N585.CB) [> 4.365 = 7.276 < 9.458] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)D586.CB) [> 3.537 = 5.895 < 7.664] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)K589.CB) [> 4.039 = 6.731 < 8.750] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)S477.CB) [> 3.309 = 5.515 < 7.169] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)F514.CB) [> 3.168 = 5.280 < 6.864] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)S475.CB) [> 4.560 = 7.600 < 9.880] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)S372.CB) [> 4.033 = 6.722 < 8.739] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)P472.CB) [> 4.365 = 7.276 < 9.458] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)P472.CB) [> 2.391 = 3.984 < 5.180] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)P472.CB) [> 3.193 = 5.321 < 6.917] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)T473.CB) [> 3.234 = 5.389 < 7.006] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)R474.CB) [> 3.216 = 5.360 < 6.968] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)S475.CB) [> 4.135 = 6.892 < 8.960] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)S477.CB) [> 3.107 = 5.179 < 6.732] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)F513.CB) [> 4.767 = 7.945 < 10.328] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)S477.CB) [> 4.117 = 6.861 < 8.920] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)K415.CB) [> 3.211 = 5.351 < 6.956] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K283.CB, (T0547)A327.CB) [> 3.097 = 5.162 < 6.710] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K283.CB, (T0547)N328.CB) [> 2.830 = 4.716 < 6.131] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K283.CB, (T0547)L411.CB) [> 4.701 = 7.836 < 10.186] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N284.CB, (T0547)N328.CB) [> 4.713 = 7.856 < 10.212] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)R474.CB) [> 4.586 = 7.643 < 9.936] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)P472.CB) [> 3.946 = 6.576 < 8.549] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)P472.CB) [> 4.752 = 7.920 < 10.296] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K357.CB, (T0547)P472.CB) [> 4.313 = 7.189 < 9.345] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)P472.CB) [> 3.801 = 6.334 < 8.235] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)P472.CB) [> 4.742 = 7.903 < 10.273] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)R474.CB) [> 4.407 = 7.345 < 9.549] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)L511.CB) [> 4.436 = 7.393 < 9.611] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)L511.CB) [> 4.233 = 7.054 < 9.170] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)L511.CB) [> 3.529 = 5.882 < 7.646] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A431.CB, (T0547)G512.CA) [> 4.133 = 6.888 < 8.955] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)I570.CB) [> 3.049 = 5.081 < 6.606] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)H568.CB) [> 3.218 = 5.363 < 6.972] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)A569.CB) [> 2.838 = 4.729 < 6.148] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)I570.CB) [> 2.450 = 4.084 < 5.309] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)M571.CB) [> 4.065 = 6.774 < 8.807] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)N575.CB) [> 3.290 = 5.483 < 7.128] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)N585.CB) [> 4.654 = 7.756 < 10.083] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)N585.CB) [> 3.428 = 5.713 < 7.427] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)D586.CB) [> 4.788 = 7.980 < 10.374] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)Q588.CB) [> 3.130 = 5.217 < 6.783] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)K589.CB) [> 3.320 = 5.534 < 7.194] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E60.CB, (T0547)I573.CB) [> 4.488 = 7.480 < 9.724] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E60.CB, (T0547)H591.CB) [> 4.533 = 7.555 < 9.822] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)R474.CB) [> 4.179 = 6.965 < 9.054] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)L511.CB) [> 4.161 = 6.935 < 9.015] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)A476.CB) [> 4.003 = 6.671 < 8.673] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G92.CA, (T0547)F513.CB) [> 4.003 = 6.671 < 8.673] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K99.CB, (T0547)L574.CB) [> 3.501 = 5.835 < 7.585] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K99.CB, (T0547)S581.CB) [> 4.090 = 6.816 < 8.861] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K99.CB, (T0547)I592.CB) [> 3.488 = 5.814 < 7.558] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L100.CB, (T0547)L574.CB) [> 3.466 = 5.777 < 7.510] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)K414.CB) [> 4.063 = 6.772 < 8.804] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)I412.CB) [> 4.222 = 7.036 < 9.147] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)A327.CB) [> 1.602 = 2.670 < 3.472] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)A326.CB) [> 3.932 = 6.553 < 8.519] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)V325.CB) [> 4.226 = 7.043 < 9.156] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)F324.CB) [> 3.078 = 5.131 < 6.670] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)R323.CB) [> 2.434 = 4.056 < 5.273] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)G322.CA) [> 4.561 = 7.602 < 9.883] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)T291.CB) [> 4.230 = 7.050 < 9.165] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q281.CB, (T0547)N328.CB) [> 2.666 = 4.443 < 5.776] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q281.CB, (T0547)A327.CB) [> 3.071 = 5.118 < 6.654] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)I412.CB) [> 4.701 = 7.834 < 10.185] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)H329.CB) [> 4.794 = 7.990 < 10.386] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G101.CA, (T0547)S581.CB) [> 3.599 = 5.999 < 7.798] w=0.013 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)I153.CB) [> 4.794 = 7.990 < 10.387] w=0.004 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)I166.CB) [> 4.322 = 7.203 < 9.364] w=0.004 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)L218.CB) [> 4.040 = 6.733 < 8.753] w=0.004 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)K171.CB) [> 4.708 = 7.847 < 10.201] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)I167.CB) [> 4.686 = 7.811 < 10.154] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)A165.CB) [> 4.565 = 7.609 < 9.892] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)G133.CA) [> 4.681 = 7.801 < 10.142] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K95.CB, (T0547)A119.CB) [> 4.610 = 7.684 < 9.989] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)E115.CB) [> 3.711 = 6.184 < 8.040] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F73.CB, (T0547)N297.CB) [> 2.735 = 4.559 < 5.927] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F73.CB, (T0547)A296.CB) [> 3.908 = 6.514 < 8.468] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E72.CB, (T0547)N297.CB) [> 4.747 = 7.911 < 10.284] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)A296.CB) [> 3.489 = 5.815 < 7.560] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)N297.CB) [> 4.311 = 7.185 < 9.341] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)R293.CB) [> 2.887 = 4.811 < 6.254] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)L292.CB) [> 3.831 = 6.386 < 8.301] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)F318.CB) [> 4.221 = 7.035 < 9.145] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)F318.CB) [> 3.269 = 5.448 < 7.082] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)A296.CB) [> 4.739 = 7.899 < 10.269] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)D298.CB) [> 4.473 = 7.455 < 9.691] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)D298.CB) [> 4.289 = 7.148 < 9.292] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)N297.CB) [> 4.545 = 7.574 < 9.847] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)T291.CB) [> 4.290 = 7.150 < 9.295] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)N297.CB) [> 3.765 = 6.275 < 8.157] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)T291.CB) [> 2.532 = 4.219 < 5.485] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)R293.CB) [> 4.563 = 7.605 < 9.886] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)T291.CB) [> 4.049 = 6.748 < 8.773] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L258.CB) [> 4.667 = 7.778 < 10.111] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)I238.CB) [> 4.497 = 7.494 < 9.743] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E148.CB, (T0547)K171.CB) [> 3.884 = 6.474 < 8.416] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)E148.CB, (T0547)I169.CB) [> 4.262 = 7.103 < 9.234] w=0.003 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)K102.CB) [> 3.092 = 5.153 < 6.699] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)G107.CA) [> 3.649 = 6.082 < 7.906] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)L97.CB) [> 4.426 = 7.377 < 9.591] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)L108.CB) [> 2.993 = 4.988 < 6.485] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)L116.CB) [> 4.797 = 7.996 < 10.394] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)S112.CB) [> 3.965 = 6.608 < 8.591] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)A114.CB) [> 4.711 = 7.852 < 10.208] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)A114.CB) [> 4.668 = 7.780 < 10.114] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)E115.CB) [> 3.344 = 5.573 < 7.245] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)A147.CB) [> 2.942 = 4.904 < 6.375] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)M149.CB) [> 4.533 = 7.555 < 9.821] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)L97.CB) [> 3.482 = 5.803 < 7.544] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)A268.CB) [> 4.764 = 7.940 < 10.322] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)L108.CB) [> 3.808 = 6.346 < 8.250] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)N80.CB) [> 3.246 = 5.410 < 7.034] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)N80.CB) [> 4.668 = 7.780 < 10.113] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)V82.CB) [> 3.810 = 6.349 < 8.254] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)V82.CB) [> 3.926 = 6.543 < 8.506] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D298.CB, (T0547)P315.CB) [> 3.739 = 6.232 < 8.102] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D298.CB, (T0547)E314.CB) [> 3.266 = 5.444 < 7.077] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)D298.CB, (T0547)D312.CB) [> 3.821 = 6.369 < 8.280] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N297.CB, (T0547)E314.CB) [> 4.596 = 7.661 < 9.959] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N297.CB, (T0547)K311.CB) [> 4.737 = 7.895 < 10.263] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)P315.CB) [> 3.175 = 5.291 < 6.879] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)E314.CB) [> 4.693 = 7.821 < 10.168] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)D312.CB) [> 3.242 = 5.403 < 7.024] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q281.CB, (T0547)L292.CB) [> 4.407 = 7.345 < 9.548] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)D312.CB) [> 3.420 = 5.701 < 7.411] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)R288.CB) [> 2.801 = 4.669 < 6.069] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)P315.CB) [> 4.774 = 7.956 < 10.343] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N249.CB, (T0547)K311.CB) [> 4.710 = 7.850 < 10.205] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)P315.CB) [> 4.050 = 6.750 < 8.775] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)Q281.CB) [> 4.789 = 7.982 < 10.376] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)Q281.CB) [> 4.732 = 7.887 < 10.253] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)L258.CB) [> 4.439 = 7.398 < 9.618] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)G262.CA) [> 4.786 = 7.976 < 10.369] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)G262.CA) [> 4.731 = 7.885 < 10.251] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)S202.CB, (T0547)G235.CA) [> 4.514 = 7.523 < 9.780] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)N201.CB, (T0547)S236.CB) [> 4.175 = 6.958 < 9.045] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)K171.CB) [> 4.748 = 7.913 < 10.287] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)I167.CB) [> 4.719 = 7.866 < 10.225] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)A165.CB) [> 4.521 = 7.535 < 9.796] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)K171.CB) [> 3.884 = 6.474 < 8.416] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)L224.CB) [> 4.727 = 7.879 < 10.242] w=0.001 to rejected_bonus # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)A165.CB) [> 4.451 = 7.418 < 9.643] w=0.001 to rejected_bonus # future Constraint commands -> noncontact # future HelixConstraint commands -> noncontact # future StrandConstraint commands -> noncontact # future SheetConstraint commands -> noncontact # future Hbond commands -> noncontact # future SSbond commands -> noncontact # reading script from file noncontact.constraints # future Constraint commands -> noncontact_bonus # future HelixConstraint commands -> noncontact_bonus # future StrandConstraint commands -> noncontact_bonus # future SheetConstraint commands -> noncontact_bonus # future Hbond commands -> noncontact_bonus # future SSbond commands -> noncontact_bonus # reading script from file noncontact_bonus.constraints # future Constraint commands -> ehl2_constraints # future HelixConstraint commands -> ehl2_constraints # future StrandConstraint commands -> ehl2_constraints # future SheetConstraint commands -> ehl2_constraints # future Hbond commands -> ehl2_constraints # future SSbond commands -> ehl2_constraints # reading script from file T0547.dssp-ehl2.constraints # StrandConstraint # Added 1 Strand constraints for (T0547)F14 through (T0547)I16 to ehl2_constraints # StrandConstraint # Added 1 Strand constraints for (T0547)C22 through (T0547)N24 to ehl2_constraints # HelixConstraint # Added 9 helix constraints for (T0547)D33 through (T0547)D40 to ehl2_constraints # StrandConstraint Warning: can't construct Strand constraints for (T0547)L48 and (T0547)L49 as there are no CA atoms with usable spacing # HelixConstraint # Added 61 helix constraints for (T0547)P52 through (T0547)E72 to ehl2_constraints # StrandConstraint # Added 1 Strand constraints for (T0547)A81 through (T0547)Y83 to ehl2_constraints # HelixConstraint # Added 11 helix constraints for (T0547)P91 through (T0547)K99 to ehl2_constraints # HelixConstraint # Added 13 helix constraints for (T0547)K113 through (T0547)A121 to ehl2_constraints # StrandConstraint # Added 1 Strand constraints for (T0547)I129 through (T0547)V131 to ehl2_constraints # HelixConstraint # Added 17 helix constraints for (T0547)R137 through (T0547)A147 to ehl2_constraints # StrandConstraint # Added 4 Strand constraints for (T0547)I153 through (T0547)I157 to ehl2_constraints # HelixConstraint # Added 31 helix constraints for (T0547)L160 through (T0547)R173 to ehl2_constraints # StrandConstraint # Added 6 Strand constraints for (T0547)N179 through (T0547)V184 to ehl2_constraints # HelixConstraint # Added 27 helix constraints for (T0547)S208 through (T0547)E220 to ehl2_constraints # StrandConstraint # Added 2 Strand constraints for (T0547)M229 through (T0547)F232 to ehl2_constraints # HelixConstraint # Added 61 helix constraints for (T0547)I241 through (T0547)M261 to ehl2_constraints # StrandConstraint # Added 1 Strand constraints for (T0547)A268 through (T0547)N270 to ehl2_constraints # HelixConstraint # Added 61 helix constraints for (T0547)Y290 through (T0547)Q309 to ehl2_constraints # StrandConstraint # Added 2 Strand constraints for (T0547)D316 through (T0547)I319 to ehl2_constraints # StrandConstraint # Added 2 Strand constraints for (T0547)V331 through (T0547)A334 to ehl2_constraints # HelixConstraint # Added 19 helix constraints for (T0547)P356 through (T0547)Y366 to ehl2_constraints # HelixConstraint # Added 1 helix constraints for (T0547)Q433 through (T0547)V436 to ehl2_constraints # StrandConstraint # Added 4 Strand constraints for (T0547)L441 through (T0547)S445 to ehl2_constraints # HelixConstraint # Added 4 helix constraints for (T0547)P451 through (T0547)L456 to ehl2_constraints # StrandConstraint # Added 2 Strand constraints for (T0547)A476 through (T0547)W479 to ehl2_constraints # StrandConstraint Warning: can't construct Strand constraints for (T0547)L511 and (T0547)G512 as there are no CA atoms with usable spacing # HelixConstraint # Added 8 helix constraints for (T0547)V516 through (T0547)L523 to ehl2_constraints # StrandConstraint # Added 6 Strand constraints for (T0547)E535 through (T0547)I540 to ehl2_constraints # StrandConstraint # Added 4 Strand constraints for (T0547)E546 through (T0547)I550 to ehl2_constraints # HelixConstraint # Added 7 helix constraints for (T0547)I556 through (T0547)D562 to ehl2_constraints # HelixConstraint # Added 46 helix constraints for (T0547)I567 through (T0547)L583 to ehl2_constraints # HelixConstraint # Added 20 helix constraints for (T0547)K589 through (T0547)L600 to ehl2_constraints # StrandConstraint # Added 1 Strand constraints for (T0547)K607 through (T0547)I609 to ehl2_constraints # future Constraint commands -> align_sheets # future HelixConstraint commands -> align_sheets # future StrandConstraint commands -> align_sheets # future SheetConstraint commands -> align_sheets # future Hbond commands -> align_sheets # future SSbond commands -> align_sheets # reading script from file T0547.undertaker-align.sheets # SheetConstraint # Warning: strands too close on chain: (T0547)G455--(T0547)E457 (T0547)F453--(T0547)G455 # Added 12 sheet constraints for (T0547)G455--(T0547)E457 (T0547)F453--(T0547)G455 with (T0547)G455 of first strand Hbonded to align_sheets # SheetConstraint # Added 10 sheet constraints for (T0547)A431--(T0547)Q433 (T0547)L446--(T0547)F444 with (T0547)I432 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)L441--(T0547)F444 (T0547)E435--(T0547)I432 with (T0547)V442 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)I432--(T0547)E435 (T0547)L48--(T0547)F51 with (T0547)Q433 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0547)I407--(T0547)L411 (T0547)S372--(T0547)S368 with (T0547)I407 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)V331--(T0547)V336 (T0547)L411--(T0547)E406 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 10 sheet constraints for (T0547)D380--(T0547)I382 (T0547)L394--(T0547)F392 with (T0547)S381 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)T390--(T0547)F392 (T0547)D383--(T0547)S381 with (T0547)T390 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)D380--(T0547)I382 (T0547)K348--(T0547)I350 with (T0547)D380 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)E338--(T0547)F340 (T0547)I350--(T0547)K348 with (T0547)E338 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)N80--(T0547)V82 (T0547)F318--(T0547)E320 with (T0547)N80 of first strand Hbonded to align_sheets # SheetConstraint # Added 35 sheet constraints for (T0547)K267--(T0547)G272 (T0547)P315--(T0547)E320 with (T0547)K267 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)L275--(T0547)A276 (T0547)I238--(T0547)T239 with (T0547)A276 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)I230--(T0547)H233 (T0547)I269--(T0547)G272 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Added 7 sheet constraints for (T0547)I238--(T0547)T239 (T0547)G192--(T0547)I193 with (T0547)T239 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)L234--(T0547)Q237 (T0547)A189--(T0547)G192 with (T0547)L234 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)R183--(T0547)R185 (T0547)G205--(T0547)T207 with (T0547)R183 of first strand Hbonded to align_sheets # SheetConstraint # Added 22 sheet constraints for (T0547)W194--(T0547)G198 (T0547)V191--(T0547)H187 with (T0547)W194 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)T130--(T0547)V131 (T0547)I153--(T0547)T154 with (T0547)V131 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)E148--(T0547)G150 (T0547)I142--(T0547)F144 # Added 12 sheet constraints for (T0547)E148--(T0547)G150 (T0547)I142--(T0547)F144 with (T0547)E148 of first strand Hbonded to align_sheets # SheetConstraint # Added 25 sheet constraints for (T0547)P128--(T0547)N132 (T0547)G107--(T0547)G111 with (T0547)P128 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)G107--(T0547)E109 (T0547)V82--(T0547)P84 with (T0547)G107 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)P29--(T0547)I31 (T0547)I23--(T0547)V21 with (T0547)P29 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)N13--(T0547)F14 (T0547)I23--(T0547)C22 with (T0547)F14 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)A431--(T0547)I432 (T0547)L446--(T0547)S445 with (T0547)I432 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)L441--(T0547)F444 (T0547)E435--(T0547)I432 with (T0547)V442 of first strand Hbonded to align_sheets # SheetConstraint # Added 27 sheet constraints for (T0547)A431--(T0547)E435 (T0547)L47--(T0547)F51 with (T0547)A431 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0547)I407--(T0547)L411 (T0547)S372--(T0547)S368 with (T0547)I407 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)V331--(T0547)V336 (T0547)L411--(T0547)E406 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)Y377--(T0547)L378 (T0547)L399--(T0547)D398 with (T0547)Y377 of first strand Hbonded to align_sheets # SheetConstraint # Added 5 sheet constraints for (T0547)H379--(T0547)D380 (T0547)Y396--(T0547)G395 with (T0547)H379 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)D380--(T0547)S381 (T0547)L394--(T0547)D393 with (T0547)S381 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)T390--(T0547)F392 (T0547)D383--(T0547)S381 with (T0547)T390 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)K348--(T0547)L351 (T0547)D380--(T0547)D383 with (T0547)L349 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)I350--(T0547)K352 (T0547)L337--(T0547)P335 with (T0547)I350 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)E338--(T0547)F340 (T0547)I350--(T0547)K348 with (T0547)E338 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Added 27 sheet constraints for (T0547)G78--(T0547)V82 (T0547)D316--(T0547)E320 with (T0547)G78 of first strand Hbonded to align_sheets # SheetConstraint # Added 35 sheet constraints for (T0547)K267--(T0547)G272 (T0547)P315--(T0547)E320 with (T0547)K267 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)L275--(T0547)A276 (T0547)I238--(T0547)T239 with (T0547)A276 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)I230--(T0547)H233 (T0547)I269--(T0547)G272 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)L224--(T0547)F227 (T0547)P178--(T0547)G181 with (T0547)E225 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)G181--(T0547)R183 (T0547)T156--(T0547)E158 with (T0547)G181 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)I153--(T0547)T154 (T0547)N179--(T0547)I180 with (T0547)T154 of first strand Hbonded to align_sheets # SheetConstraint # Added 25 sheet constraints for (T0547)P128--(T0547)N132 (T0547)G107--(T0547)G111 with (T0547)P128 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)V82--(T0547)L85 (T0547)G107--(T0547)A110 with (T0547)Y83 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)G455--(T0547)E457 (T0547)F453--(T0547)G455 # Added 12 sheet constraints for (T0547)G455--(T0547)E457 (T0547)F453--(T0547)G455 with (T0547)G455 of first strand Hbonded to align_sheets # SheetConstraint # Added 10 sheet constraints for (T0547)A431--(T0547)Q433 (T0547)L446--(T0547)F444 with (T0547)I432 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)Y440--(T0547)S445 (T0547)V436--(T0547)A431 with (T0547)Y440 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)I432--(T0547)E435 (T0547)L48--(T0547)F51 with (T0547)Q433 of first strand Hbonded to align_sheets # SheetConstraint # Added 38 sheet constraints for (T0547)E406--(T0547)I412 (T0547)V336--(T0547)A330 with (T0547)E406 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0547)I407--(T0547)L411 (T0547)S372--(T0547)S368 with (T0547)I407 of first strand Hbonded to align_sheets # SheetConstraint # Added 5 sheet constraints for (T0547)H379--(T0547)D380 (T0547)Y396--(T0547)G395 with (T0547)H379 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)D380--(T0547)S381 (T0547)L394--(T0547)D393 with (T0547)S381 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)T390--(T0547)F392 (T0547)D383--(T0547)S381 with (T0547)T390 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)K348--(T0547)L351 (T0547)D380--(T0547)D383 with (T0547)L349 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)S372--(T0547)A374 (T0547)V21--(T0547)G19 with (T0547)S372 of first strand Hbonded to align_sheets # SheetConstraint # Added 15 sheet constraints for (T0547)I350--(T0547)K353 (T0547)L337--(T0547)A334 with (T0547)I350 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)E338--(T0547)F340 (T0547)I350--(T0547)K348 with (T0547)E338 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)F79--(T0547)V82 (T0547)I317--(T0547)E320 with (T0547)N80 of first strand Hbonded to align_sheets # SheetConstraint # Added 35 sheet constraints for (T0547)K267--(T0547)G272 (T0547)P315--(T0547)E320 with (T0547)K267 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)N305--(T0547)Q309 (T0547)L303--(T0547)A307 # Added 28 sheet constraints for (T0547)N305--(T0547)Q309 (T0547)L303--(T0547)A307 with (T0547)N305 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)L275--(T0547)A276 (T0547)I238--(T0547)T239 with (T0547)A276 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)I230--(T0547)H233 (T0547)I269--(T0547)G272 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)L224--(T0547)F227 (T0547)P178--(T0547)G181 with (T0547)E225 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)G205--(T0547)S208 (T0547)R183--(T0547)L186 with (T0547)L206 of first strand Hbonded to align_sheets # SheetConstraint # Added 7 sheet constraints for (T0547)T156--(T0547)I157 (T0547)G181--(T0547)L182 with (T0547)I157 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)I153--(T0547)T154 (T0547)N179--(T0547)I180 with (T0547)T154 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)T130--(T0547)V131 (T0547)I153--(T0547)T154 with (T0547)V131 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)E148--(T0547)G150 (T0547)I142--(T0547)F144 # Added 12 sheet constraints for (T0547)E148--(T0547)G150 (T0547)I142--(T0547)F144 with (T0547)E148 of first strand Hbonded to align_sheets # SheetConstraint # Added 25 sheet constraints for (T0547)P128--(T0547)N132 (T0547)G107--(T0547)G111 with (T0547)P128 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)V82--(T0547)L85 (T0547)G107--(T0547)A110 with (T0547)Y83 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)P29--(T0547)I31 (T0547)I23--(T0547)V21 with (T0547)P29 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)F14--(T0547)K17 (T0547)I23--(T0547)K20 with (T0547)I15 of first strand Hbonded to align_sheets # SheetConstraint # Added 26 sheet constraints for (T0547)D480--(T0547)D484 (T0547)L48--(T0547)P52 with (T0547)I481 of first strand Hbonded to align_sheets # SheetConstraint # Added 7 sheet constraints for (T0547)L430--(T0547)A431 (T0547)P46--(T0547)L47 with (T0547)A431 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)V331--(T0547)V336 (T0547)L411--(T0547)E406 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 10 sheet constraints for (T0547)E376--(T0547)L378 (T0547)Q400--(T0547)D398 with (T0547)Y377 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)D380--(T0547)S381 (T0547)L394--(T0547)D393 with (T0547)S381 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)T390--(T0547)F392 (T0547)D383--(T0547)S381 with (T0547)T390 of first strand Hbonded to align_sheets # SheetConstraint # Added 28 sheet constraints for (T0547)K348--(T0547)K352 (T0547)D380--(T0547)H384 with (T0547)L349 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)I359--(T0547)L362 (T0547)K357--(T0547)D360 # Added 20 sheet constraints for (T0547)I359--(T0547)L362 (T0547)K357--(T0547)D360 with (T0547)I359 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)I350--(T0547)K352 (T0547)L337--(T0547)P335 with (T0547)I350 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)E338--(T0547)F340 (T0547)I350--(T0547)K348 with (T0547)E338 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)S341--(T0547)Q342 (T0547)E346--(T0547)A345 with (T0547)Q342 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)F79--(T0547)V82 (T0547)I317--(T0547)E320 with (T0547)N80 of first strand Hbonded to align_sheets # SheetConstraint # Added 35 sheet constraints for (T0547)K267--(T0547)G272 (T0547)P315--(T0547)E320 with (T0547)K267 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)I230--(T0547)H233 (T0547)I269--(T0547)G272 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 7 sheet constraints for (T0547)F227--(T0547)T228 (T0547)I180--(T0547)G181 with (T0547)T228 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)E225--(T0547)F227 (T0547)N179--(T0547)G181 with (T0547)E225 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)R183--(T0547)R185 (T0547)G205--(T0547)T207 with (T0547)R183 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)T156--(T0547)E158 (T0547)G181--(T0547)R183 with (T0547)I157 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)N152--(T0547)T154 (T0547)P178--(T0547)I180 with (T0547)N152 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)E148--(T0547)G150 (T0547)I142--(T0547)F144 # Added 12 sheet constraints for (T0547)E148--(T0547)G150 (T0547)I142--(T0547)F144 with (T0547)E148 of first strand Hbonded to align_sheets # SheetConstraint # Added 25 sheet constraints for (T0547)G107--(T0547)G111 (T0547)P128--(T0547)N132 with (T0547)L108 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)V82--(T0547)L85 (T0547)G107--(T0547)A110 with (T0547)Y83 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)G455--(T0547)E457 (T0547)F453--(T0547)G455 # Added 12 sheet constraints for (T0547)G455--(T0547)E457 (T0547)F453--(T0547)G455 with (T0547)G455 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)A431--(T0547)I432 (T0547)L446--(T0547)S445 with (T0547)I432 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)L441--(T0547)F444 (T0547)E435--(T0547)I432 with (T0547)V442 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)I432--(T0547)E435 (T0547)L48--(T0547)F51 with (T0547)Q433 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0547)I407--(T0547)L411 (T0547)S372--(T0547)S368 with (T0547)I407 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)V331--(T0547)V336 (T0547)L411--(T0547)E406 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 5 sheet constraints for (T0547)H379--(T0547)D380 (T0547)Y396--(T0547)G395 with (T0547)H379 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)D380--(T0547)S381 (T0547)L394--(T0547)D393 with (T0547)S381 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)T390--(T0547)F392 (T0547)D383--(T0547)S381 with (T0547)T390 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)K348--(T0547)L351 (T0547)D380--(T0547)D383 with (T0547)L349 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)S372--(T0547)A374 (T0547)V21--(T0547)G19 with (T0547)S372 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)I350--(T0547)K352 (T0547)L337--(T0547)P335 with (T0547)I350 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)L337--(T0547)F340 (T0547)L351--(T0547)K348 with (T0547)E338 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)S341--(T0547)Q342 (T0547)E346--(T0547)A345 with (T0547)Q342 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)F79--(T0547)V82 (T0547)I317--(T0547)E320 with (T0547)N80 of first strand Hbonded to align_sheets # SheetConstraint # Added 35 sheet constraints for (T0547)K267--(T0547)G272 (T0547)P315--(T0547)E320 with (T0547)K267 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)I269--(T0547)N270 (T0547)I230--(T0547)H231 with (T0547)N270 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)L224--(T0547)F227 (T0547)P178--(T0547)G181 with (T0547)E225 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)G205--(T0547)S208 (T0547)R183--(T0547)L186 with (T0547)L206 of first strand Hbonded to align_sheets # SheetConstraint # Added 7 sheet constraints for (T0547)T156--(T0547)I157 (T0547)G181--(T0547)L182 with (T0547)I157 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)I153--(T0547)T154 (T0547)N179--(T0547)I180 with (T0547)T154 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)G107--(T0547)A110 (T0547)P128--(T0547)V131 with (T0547)L108 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)V82--(T0547)L85 (T0547)G107--(T0547)A110 with (T0547)Y83 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)P29--(T0547)I31 (T0547)I23--(T0547)V21 with (T0547)P29 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)F14--(T0547)K17 (T0547)I23--(T0547)K20 with (T0547)I15 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)A431--(T0547)I432 (T0547)L446--(T0547)S445 with (T0547)I432 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)L441--(T0547)F444 (T0547)E435--(T0547)I432 with (T0547)V442 of first strand Hbonded to align_sheets # SheetConstraint # Added 34 sheet constraints for (T0547)A431--(T0547)V436 (T0547)L47--(T0547)P52 with (T0547)A431 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)V331--(T0547)V336 (T0547)L411--(T0547)E406 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)Y377--(T0547)L378 (T0547)L399--(T0547)D398 with (T0547)Y377 of first strand Hbonded to align_sheets # SheetConstraint # Added 5 sheet constraints for (T0547)H379--(T0547)D380 (T0547)Y396--(T0547)G395 with (T0547)H379 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)D380--(T0547)S381 (T0547)L394--(T0547)D393 with (T0547)S381 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)T390--(T0547)F392 (T0547)D383--(T0547)S381 with (T0547)T390 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)K348--(T0547)L351 (T0547)D380--(T0547)D383 with (T0547)L349 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)I350--(T0547)K352 (T0547)L337--(T0547)P335 with (T0547)I350 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)L337--(T0547)F340 (T0547)L351--(T0547)K348 with (T0547)E338 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)S341--(T0547)Q342 (T0547)E346--(T0547)A345 with (T0547)Q342 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Added 33 sheet constraints for (T0547)I317--(T0547)G322 (T0547)F79--(T0547)P84 with (T0547)I317 of first strand Hbonded to align_sheets # SheetConstraint # Added 35 sheet constraints for (T0547)K267--(T0547)G272 (T0547)P315--(T0547)E320 with (T0547)K267 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)L275--(T0547)A276 (T0547)I238--(T0547)T239 with (T0547)A276 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)I230--(T0547)H233 (T0547)I269--(T0547)G272 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)L224--(T0547)F227 (T0547)P178--(T0547)G181 with (T0547)E225 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)G205--(T0547)S208 (T0547)R183--(T0547)L186 with (T0547)L206 of first strand Hbonded to align_sheets # SheetConstraint # Added 7 sheet constraints for (T0547)T156--(T0547)I157 (T0547)G181--(T0547)L182 with (T0547)I157 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)I153--(T0547)T154 (T0547)N179--(T0547)I180 with (T0547)T154 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)E148--(T0547)G150 (T0547)I142--(T0547)F144 # Added 12 sheet constraints for (T0547)E148--(T0547)G150 (T0547)I142--(T0547)F144 with (T0547)E148 of first strand Hbonded to align_sheets # SheetConstraint # Added 25 sheet constraints for (T0547)P128--(T0547)N132 (T0547)G107--(T0547)G111 with (T0547)P128 of first strand Hbonded to align_sheets # SheetConstraint # Added 27 sheet constraints for (T0547)A81--(T0547)L85 (T0547)Y106--(T0547)A110 with (T0547)A81 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)A431--(T0547)I432 (T0547)L446--(T0547)S445 with (T0547)I432 of first strand Hbonded to align_sheets # SheetConstraint # Added 22 sheet constraints for (T0547)L441--(T0547)S445 (T0547)E435--(T0547)A431 with (T0547)V442 of first strand Hbonded to align_sheets # SheetConstraint # Added 26 sheet constraints for (T0547)I432--(T0547)V436 (T0547)L48--(T0547)P52 with (T0547)Q433 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)V331--(T0547)V336 (T0547)L411--(T0547)E406 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)Y396--(T0547)L399 (T0547)D380--(T0547)Y377 with (T0547)V397 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)T390--(T0547)F392 (T0547)D383--(T0547)S381 with (T0547)T390 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)K348--(T0547)L351 (T0547)D380--(T0547)D383 with (T0547)L349 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)I350--(T0547)K352 (T0547)L337--(T0547)P335 with (T0547)I350 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)L337--(T0547)F340 (T0547)L351--(T0547)K348 with (T0547)E338 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)N80--(T0547)V82 (T0547)F318--(T0547)E320 with (T0547)N80 of first strand Hbonded to align_sheets # SheetConstraint # Added 35 sheet constraints for (T0547)K267--(T0547)G272 (T0547)P315--(T0547)E320 with (T0547)K267 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)I230--(T0547)H233 (T0547)I269--(T0547)G272 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)L224--(T0547)F227 (T0547)P178--(T0547)G181 with (T0547)E225 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)G205--(T0547)S208 (T0547)R183--(T0547)L186 with (T0547)L206 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)L155--(T0547)E158 (T0547)I180--(T0547)R183 with (T0547)L155 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)L155--(T0547)E158 (T0547)V131--(T0547)F134 with (T0547)T156 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)E148--(T0547)G150 (T0547)I142--(T0547)F144 # Added 12 sheet constraints for (T0547)E148--(T0547)G150 (T0547)I142--(T0547)F144 with (T0547)E148 of first strand Hbonded to align_sheets # SheetConstraint # Added 25 sheet constraints for (T0547)P128--(T0547)N132 (T0547)G107--(T0547)G111 with (T0547)P128 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)V82--(T0547)L85 (T0547)G107--(T0547)A110 with (T0547)Y83 of first strand Hbonded to align_sheets # SheetConstraint # Added 10 sheet constraints for (T0547)A431--(T0547)Q433 (T0547)L446--(T0547)F444 with (T0547)I432 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)Y440--(T0547)S445 (T0547)V436--(T0547)A431 with (T0547)Y440 of first strand Hbonded to align_sheets # SheetConstraint # Added 41 sheet constraints for (T0547)L430--(T0547)V436 (T0547)P46--(T0547)P52 with (T0547)A431 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0547)I407--(T0547)L411 (T0547)S372--(T0547)S368 with (T0547)I407 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)V331--(T0547)V336 (T0547)L411--(T0547)E406 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 9 sheet constraints for (T0547)L378--(T0547)D380 (T0547)V397--(T0547)G395 with (T0547)H379 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)D380--(T0547)S381 (T0547)L394--(T0547)D393 with (T0547)S381 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)T390--(T0547)F392 (T0547)D383--(T0547)S381 with (T0547)T390 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)K348--(T0547)L351 (T0547)D380--(T0547)D383 with (T0547)L349 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)I350--(T0547)K352 (T0547)L337--(T0547)P335 with (T0547)I350 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)L337--(T0547)F340 (T0547)L351--(T0547)K348 with (T0547)E338 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Added 40 sheet constraints for (T0547)D316--(T0547)G322 (T0547)G78--(T0547)P84 with (T0547)I317 of first strand Hbonded to align_sheets # SheetConstraint # Added 27 sheet constraints for (T0547)A268--(T0547)G272 (T0547)D316--(T0547)E320 with (T0547)I269 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)L275--(T0547)A276 (T0547)I238--(T0547)T239 with (T0547)A276 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)H231--(T0547)H233 (T0547)N270--(T0547)G272 with (T0547)F232 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 7 sheet constraints for (T0547)Q226--(T0547)F227 (T0547)I180--(T0547)G181 with (T0547)F227 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)R183--(T0547)L186 (T0547)G205--(T0547)S208 with (T0547)R183 of first strand Hbonded to align_sheets # SheetConstraint # Added 7 sheet constraints for (T0547)T156--(T0547)I157 (T0547)G181--(T0547)L182 with (T0547)I157 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)N152--(T0547)T154 (T0547)P178--(T0547)I180 with (T0547)N152 of first strand Hbonded to align_sheets # SheetConstraint # Added 25 sheet constraints for (T0547)P128--(T0547)N132 (T0547)G107--(T0547)G111 with (T0547)P128 of first strand Hbonded to align_sheets # SheetConstraint # Added 27 sheet constraints for (T0547)A81--(T0547)L85 (T0547)Y106--(T0547)A110 with (T0547)A81 of first strand Hbonded to align_sheets # SheetConstraint # Added 27 sheet constraints for (T0547)P46--(T0547)R50 (T0547)L430--(T0547)D434 with (T0547)P46 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)V331--(T0547)V336 (T0547)L411--(T0547)E406 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 5 sheet constraints for (T0547)H379--(T0547)D380 (T0547)Y396--(T0547)G395 with (T0547)H379 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)D380--(T0547)S381 (T0547)L394--(T0547)D393 with (T0547)S381 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)T390--(T0547)F392 (T0547)D383--(T0547)S381 with (T0547)T390 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)K348--(T0547)L351 (T0547)D380--(T0547)D383 with (T0547)L349 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)I350--(T0547)K352 (T0547)L337--(T0547)P335 with (T0547)I350 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)E338--(T0547)F340 (T0547)I350--(T0547)K348 with (T0547)E338 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)S341--(T0547)Q342 (T0547)E346--(T0547)A345 with (T0547)Q342 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)F79--(T0547)V82 (T0547)I317--(T0547)E320 with (T0547)N80 of first strand Hbonded to align_sheets # SheetConstraint # Added 35 sheet constraints for (T0547)K267--(T0547)G272 (T0547)P315--(T0547)E320 with (T0547)K267 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)I230--(T0547)H233 (T0547)I269--(T0547)G272 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)S197--(T0547)G199 (T0547)Q237--(T0547)G235 with (T0547)G198 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 7 sheet constraints for (T0547)Q226--(T0547)F227 (T0547)I180--(T0547)G181 with (T0547)F227 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)R183--(T0547)R185 (T0547)G205--(T0547)T207 with (T0547)R183 of first strand Hbonded to align_sheets # SheetConstraint # Added 7 sheet constraints for (T0547)T156--(T0547)I157 (T0547)G181--(T0547)L182 with (T0547)I157 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)N152--(T0547)T154 (T0547)P178--(T0547)I180 with (T0547)N152 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)E148--(T0547)G150 (T0547)I142--(T0547)F144 # Added 12 sheet constraints for (T0547)E148--(T0547)G150 (T0547)I142--(T0547)F144 with (T0547)E148 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)G107--(T0547)A110 (T0547)P128--(T0547)V131 with (T0547)L108 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)V82--(T0547)L85 (T0547)G107--(T0547)A110 with (T0547)Y83 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)C22--(T0547)Y25 (T0547)I478--(T0547)I481 with (T0547)I23 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)A476--(T0547)W479 (T0547)L48--(T0547)F51 with (T0547)S477 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)V331--(T0547)V336 (T0547)L411--(T0547)E406 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 10 sheet constraints for (T0547)E376--(T0547)L378 (T0547)Q400--(T0547)D398 with (T0547)Y377 of first strand Hbonded to align_sheets # SheetConstraint # Added 5 sheet constraints for (T0547)H379--(T0547)D380 (T0547)Y396--(T0547)G395 with (T0547)H379 of first strand Hbonded to align_sheets # SheetConstraint # Added 10 sheet constraints for (T0547)D380--(T0547)I382 (T0547)L394--(T0547)F392 with (T0547)S381 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)T390--(T0547)F392 (T0547)D383--(T0547)S381 with (T0547)T390 of first strand Hbonded to align_sheets # SheetConstraint # Added 44 sheet constraints for (T0547)E346--(T0547)K352 (T0547)L378--(T0547)H384 with (T0547)N347 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)I359--(T0547)E361 (T0547)K357--(T0547)I359 # Added 14 sheet constraints for (T0547)I359--(T0547)E361 (T0547)K357--(T0547)I359 with (T0547)I359 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)I350--(T0547)K352 (T0547)L337--(T0547)P335 with (T0547)I350 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0547)E338--(T0547)Q342 (T0547)I350--(T0547)E346 with (T0547)E338 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)F79--(T0547)V82 (T0547)I317--(T0547)E320 with (T0547)N80 of first strand Hbonded to align_sheets # SheetConstraint # Added 27 sheet constraints for (T0547)A268--(T0547)G272 (T0547)D316--(T0547)E320 with (T0547)I269 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)I230--(T0547)H233 (T0547)I269--(T0547)G272 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 7 sheet constraints for (T0547)Q226--(T0547)F227 (T0547)I180--(T0547)G181 with (T0547)F227 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)R183--(T0547)R185 (T0547)G205--(T0547)T207 with (T0547)R183 of first strand Hbonded to align_sheets # SheetConstraint # Added 7 sheet constraints for (T0547)T156--(T0547)I157 (T0547)G181--(T0547)L182 with (T0547)I157 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)N152--(T0547)T154 (T0547)P178--(T0547)I180 with (T0547)N152 of first strand Hbonded to align_sheets # SheetConstraint # Added 25 sheet constraints for (T0547)P128--(T0547)N132 (T0547)G107--(T0547)G111 with (T0547)P128 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)V82--(T0547)L85 (T0547)G107--(T0547)A110 with (T0547)Y83 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)W454--(T0547)E457 (T0547)D452--(T0547)G455 # Added 18 sheet constraints for (T0547)W454--(T0547)E457 (T0547)D452--(T0547)G455 with (T0547)G455 of first strand Hbonded to align_sheets # SheetConstraint # Added 10 sheet constraints for (T0547)A431--(T0547)Q433 (T0547)L446--(T0547)F444 with (T0547)I432 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)L441--(T0547)F444 (T0547)E435--(T0547)I432 with (T0547)V442 of first strand Hbonded to align_sheets # SheetConstraint # Added 34 sheet constraints for (T0547)A431--(T0547)V436 (T0547)L47--(T0547)P52 with (T0547)A431 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0547)I407--(T0547)L411 (T0547)S372--(T0547)S368 with (T0547)I407 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)V331--(T0547)V336 (T0547)L411--(T0547)E406 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)D380--(T0547)S381 (T0547)L394--(T0547)D393 with (T0547)S381 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)T390--(T0547)F392 (T0547)D383--(T0547)S381 with (T0547)T390 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)K348--(T0547)L351 (T0547)D380--(T0547)D383 with (T0547)L349 of first strand Hbonded to align_sheets # SheetConstraint # Added 15 sheet constraints for (T0547)I350--(T0547)K353 (T0547)L337--(T0547)A334 with (T0547)I350 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)E338--(T0547)F340 (T0547)I350--(T0547)K348 with (T0547)E338 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Added 34 sheet constraints for (T0547)G78--(T0547)Y83 (T0547)D316--(T0547)S321 with (T0547)G78 of first strand Hbonded to align_sheets # SheetConstraint # Added 35 sheet constraints for (T0547)K267--(T0547)G272 (T0547)P315--(T0547)E320 with (T0547)K267 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)L275--(T0547)A276 (T0547)I238--(T0547)T239 with (T0547)A276 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)I230--(T0547)H233 (T0547)I269--(T0547)G272 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)L224--(T0547)F227 (T0547)P178--(T0547)G181 with (T0547)E225 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)G205--(T0547)S208 (T0547)R183--(T0547)L186 with (T0547)L206 of first strand Hbonded to align_sheets # SheetConstraint # Added 7 sheet constraints for (T0547)T156--(T0547)I157 (T0547)G181--(T0547)L182 with (T0547)I157 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)I153--(T0547)T154 (T0547)N179--(T0547)I180 with (T0547)T154 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)T130--(T0547)V131 (T0547)I153--(T0547)T154 with (T0547)V131 of first strand Hbonded to align_sheets # SheetConstraint # Added 25 sheet constraints for (T0547)P128--(T0547)N132 (T0547)G107--(T0547)G111 with (T0547)P128 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)G107--(T0547)E109 (T0547)V82--(T0547)P84 with (T0547)G107 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)K68--(T0547)K71 (T0547)F66--(T0547)A69 # Added 20 sheet constraints for (T0547)K68--(T0547)K71 (T0547)F66--(T0547)A69 with (T0547)A69 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)P29--(T0547)I31 (T0547)I23--(T0547)V21 with (T0547)P29 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)F14--(T0547)K17 (T0547)I23--(T0547)K20 with (T0547)I15 of first strand Hbonded to align_sheets # SheetConstraint # Added 10 sheet constraints for (T0547)G512--(T0547)F514 (T0547)I551--(T0547)G549 with (T0547)G512 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)Y545--(T0547)V547 (T0547)I8--(T0547)I6 with (T0547)Y545 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)G512--(T0547)L515 (T0547)L48--(T0547)F51 with (T0547)F513 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)G455--(T0547)N459 (T0547)F453--(T0547)E457 # Added 26 sheet constraints for (T0547)G455--(T0547)N459 (T0547)F453--(T0547)E457 with (T0547)G455 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)V331--(T0547)A334 (T0547)L411--(T0547)L408 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)H379--(T0547)I382 (T0547)L394--(T0547)L391 with (T0547)D380 of first strand Hbonded to align_sheets # SheetConstraint # Added 22 sheet constraints for (T0547)K348--(T0547)K352 (T0547)D393--(T0547)L389 with (T0547)L349 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)D383--(T0547)L385 (T0547)L391--(T0547)L389 with (T0547)D383 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)E338--(T0547)L339 (T0547)I350--(T0547)L349 with (T0547)E338 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Added 43 sheet constraints for (T0547)E314--(T0547)E320 (T0547)L266--(T0547)G272 with (T0547)E314 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)N80--(T0547)Y83 (T0547)F318--(T0547)S321 with (T0547)N80 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)I230--(T0547)F232 (T0547)I269--(T0547)L271 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)L224--(T0547)F227 (T0547)P178--(T0547)G181 with (T0547)E225 of first strand Hbonded to align_sheets # SheetConstraint # Added 27 sheet constraints for (T0547)N179--(T0547)R183 (T0547)T154--(T0547)E158 with (T0547)N179 of first strand Hbonded to align_sheets # SheetConstraint # Added 28 sheet constraints for (T0547)A127--(T0547)V131 (T0547)H151--(T0547)L155 with (T0547)A127 of first strand Hbonded to align_sheets # SheetConstraint # Added 25 sheet constraints for (T0547)P128--(T0547)N132 (T0547)G107--(T0547)G111 with (T0547)P128 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)P84--(T0547)L85 (T0547)E109--(T0547)A110 with (T0547)L85 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)V331--(T0547)L332 (T0547)I412--(T0547)L411 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0547)E406--(T0547)H410 (T0547)V336--(T0547)L332 with (T0547)E406 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)L389--(T0547)L394 (T0547)K352--(T0547)N347 with (T0547)T390 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)L391--(T0547)D393 (T0547)I382--(T0547)D380 with (T0547)L391 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)S372--(T0547)A374 (T0547)E361--(T0547)Y363 # Added 14 sheet constraints for (T0547)S372--(T0547)A374 (T0547)E361--(T0547)Y363 with (T0547)S372 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0547)E346--(T0547)I350 (T0547)Q342--(T0547)E338 with (T0547)E346 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)V325--(T0547)A327 (T0547)R323--(T0547)V325 # Added 14 sheet constraints for (T0547)V325--(T0547)A327 (T0547)R323--(T0547)V325 with (T0547)V325 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)A81--(T0547)V82 (T0547)I319--(T0547)E320 with (T0547)V82 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)L224--(T0547)F227 (T0547)P178--(T0547)G181 with (T0547)E225 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)R183--(T0547)R185 (T0547)G205--(T0547)T207 with (T0547)R183 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)L155--(T0547)E158 (T0547)I180--(T0547)R183 with (T0547)L155 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)T130--(T0547)V131 (T0547)I153--(T0547)T154 with (T0547)V131 of first strand Hbonded to align_sheets # SheetConstraint # Added 32 sheet constraints for (T0547)P128--(T0547)G133 (T0547)G107--(T0547)S112 with (T0547)P128 of first strand Hbonded to align_sheets # SheetConstraint # Added 27 sheet constraints for (T0547)A81--(T0547)L85 (T0547)Y106--(T0547)A110 with (T0547)A81 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)K423--(T0547)N425 (T0547)G421--(T0547)K423 # Added 13 sheet constraints for (T0547)K423--(T0547)N425 (T0547)G421--(T0547)K423 with (T0547)K423 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)V331--(T0547)L332 (T0547)I412--(T0547)L411 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0547)E406--(T0547)H410 (T0547)V336--(T0547)L332 with (T0547)E406 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)L391--(T0547)D393 (T0547)I382--(T0547)D380 with (T0547)L391 of first strand Hbonded to align_sheets # SheetConstraint # Added 22 sheet constraints for (T0547)K348--(T0547)K352 (T0547)D393--(T0547)L389 with (T0547)L349 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)I350--(T0547)K352 (T0547)L337--(T0547)P335 with (T0547)I350 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)E338--(T0547)F340 (T0547)I350--(T0547)K348 with (T0547)E338 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)L48--(T0547)F51 (T0547)L332--(T0547)H329 with (T0547)L49 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)N80--(T0547)V82 (T0547)I317--(T0547)I319 with (T0547)N80 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)I230--(T0547)F232 (T0547)I269--(T0547)L271 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)Q226--(T0547)T228 (T0547)N179--(T0547)G181 with (T0547)Q226 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)T154--(T0547)I157 (T0547)N179--(T0547)L182 with (T0547)L155 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)T154--(T0547)T156 (T0547)I129--(T0547)V131 with (T0547)T154 of first strand Hbonded to align_sheets # SheetConstraint # Added 26 sheet constraints for (T0547)A127--(T0547)V131 (T0547)G107--(T0547)G111 with (T0547)A127 of first strand Hbonded to align_sheets # SheetConstraint # Added 26 sheet constraints for (T0547)V82--(T0547)K86 (T0547)G107--(T0547)G111 with (T0547)Y83 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)V98--(T0547)L100 (T0547)N96--(T0547)V98 # Added 14 sheet constraints for (T0547)V98--(T0547)L100 (T0547)N96--(T0547)V98 with (T0547)V98 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)V331--(T0547)L332 (T0547)I412--(T0547)L411 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0547)E406--(T0547)H410 (T0547)V336--(T0547)L332 with (T0547)E406 of first strand Hbonded to align_sheets # SheetConstraint # Added 35 sheet constraints for (T0547)L389--(T0547)G395 (T0547)K352--(T0547)E346 with (T0547)T390 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)L391--(T0547)D393 (T0547)I382--(T0547)D380 with (T0547)L391 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0547)E346--(T0547)I350 (T0547)Q342--(T0547)E338 with (T0547)E346 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)A81--(T0547)V82 (T0547)I319--(T0547)E320 with (T0547)V82 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)I230--(T0547)F232 (T0547)I269--(T0547)L271 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)L224--(T0547)F227 (T0547)P178--(T0547)G181 with (T0547)E225 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)R183--(T0547)R185 (T0547)G205--(T0547)T207 with (T0547)R183 of first strand Hbonded to align_sheets # SheetConstraint # Added 27 sheet constraints for (T0547)T154--(T0547)E158 (T0547)N179--(T0547)R183 with (T0547)L155 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)T154--(T0547)T156 (T0547)I129--(T0547)V131 with (T0547)T154 of first strand Hbonded to align_sheets # SheetConstraint # Added 26 sheet constraints for (T0547)A127--(T0547)V131 (T0547)G107--(T0547)G111 with (T0547)A127 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)V82--(T0547)L85 (T0547)G107--(T0547)A110 with (T0547)Y83 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)I481--(T0547)D484 (T0547)Y491--(T0547)E488 with (T0547)T482 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)I481--(T0547)D484 (T0547)L49--(T0547)P52 with (T0547)I481 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)V331--(T0547)V336 (T0547)L411--(T0547)E406 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 10 sheet constraints for (T0547)I350--(T0547)K352 (T0547)T390--(T0547)I388 with (T0547)L351 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)N373--(T0547)L375 (T0547)P371--(T0547)N373 # Added 14 sheet constraints for (T0547)N373--(T0547)L375 (T0547)P371--(T0547)N373 with (T0547)N373 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)I350--(T0547)K352 (T0547)L337--(T0547)P335 with (T0547)I350 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)L337--(T0547)E338 (T0547)L351--(T0547)I350 with (T0547)E338 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)I230--(T0547)F232 (T0547)I269--(T0547)L271 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 7 sheet constraints for (T0547)F227--(T0547)T228 (T0547)I180--(T0547)G181 with (T0547)T228 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)E225--(T0547)F227 (T0547)N179--(T0547)G181 with (T0547)E225 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)R183--(T0547)R185 (T0547)G205--(T0547)T207 with (T0547)R183 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)T154--(T0547)I157 (T0547)N179--(T0547)L182 with (T0547)L155 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)P128--(T0547)T130 (T0547)I153--(T0547)L155 with (T0547)P128 of first strand Hbonded to align_sheets # SheetConstraint # Added 26 sheet constraints for (T0547)A127--(T0547)V131 (T0547)G107--(T0547)G111 with (T0547)A127 of first strand Hbonded to align_sheets # SheetConstraint # Added 15 sheet constraints for (T0547)V442--(T0547)S445 (T0547)I550--(T0547)V547 with (T0547)V442 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)Y545--(T0547)V547 (T0547)L446--(T0547)F444 with (T0547)Y545 of first strand Hbonded to align_sheets # SheetConstraint # Added 26 sheet constraints for (T0547)V442--(T0547)L446 (T0547)L48--(T0547)P52 with (T0547)N443 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)V331--(T0547)L332 (T0547)I412--(T0547)L411 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)E406--(T0547)L411 (T0547)V336--(T0547)V331 with (T0547)E406 of first strand Hbonded to align_sheets # SheetConstraint # Added 11 sheet constraints for (T0547)D393--(T0547)G395 (T0547)I382--(T0547)D380 with (T0547)D393 of first strand Hbonded to align_sheets # SheetConstraint # Added 21 sheet constraints for (T0547)K348--(T0547)K352 (T0547)G395--(T0547)L391 with (T0547)L349 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)K348--(T0547)I350 (T0547)F340--(T0547)E338 with (T0547)K348 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0547)L48--(T0547)F51 (T0547)L332--(T0547)H329 with (T0547)L49 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)V325--(T0547)A327 (T0547)R323--(T0547)V325 # Added 14 sheet constraints for (T0547)V325--(T0547)A327 (T0547)R323--(T0547)V325 with (T0547)V325 of first strand Hbonded to align_sheets # SheetConstraint # Added 17 sheet constraints for (T0547)I319--(T0547)G322 (T0547)A81--(T0547)P84 with (T0547)I319 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)I230--(T0547)F232 (T0547)I269--(T0547)L271 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)T256--(T0547)L258 (T0547)I254--(T0547)T256 # Added 14 sheet constraints for (T0547)T256--(T0547)L258 (T0547)I254--(T0547)T256 with (T0547)T256 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)L224--(T0547)F227 (T0547)P178--(T0547)G181 with (T0547)E225 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)R183--(T0547)R185 (T0547)G205--(T0547)T207 with (T0547)R183 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)T154--(T0547)I157 (T0547)N179--(T0547)L182 with (T0547)L155 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)T154--(T0547)T156 (T0547)T130--(T0547)N132 with (T0547)T154 of first strand Hbonded to align_sheets # SheetConstraint # Added 25 sheet constraints for (T0547)P128--(T0547)N132 (T0547)G107--(T0547)G111 with (T0547)P128 of first strand Hbonded to align_sheets # SheetConstraint # Added 26 sheet constraints for (T0547)V82--(T0547)K86 (T0547)G107--(T0547)G111 with (T0547)Y83 of first strand Hbonded to align_sheets # SheetConstraint # Added 15 sheet constraints for (T0547)L441--(T0547)F444 (T0547)G455--(T0547)D452 with (T0547)V442 of first strand Hbonded to align_sheets # SheetConstraint # Added 27 sheet constraints for (T0547)L441--(T0547)S445 (T0547)L47--(T0547)F51 with (T0547)L441 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)V331--(T0547)L332 (T0547)I412--(T0547)L411 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)L351--(T0547)K352 (T0547)V397--(T0547)Y396 with (T0547)L351 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)L337--(T0547)Q342 (T0547)L351--(T0547)E346 with (T0547)E338 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0547)L47--(T0547)F51 (T0547)I333--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)A326--(T0547)N328 (T0547)F324--(T0547)A326 # Added 14 sheet constraints for (T0547)A326--(T0547)N328 (T0547)F324--(T0547)A326 with (T0547)A327 of first strand Hbonded to align_sheets # SheetConstraint # Added 25 sheet constraints for (T0547)F318--(T0547)G322 (T0547)N80--(T0547)P84 with (T0547)I319 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)I230--(T0547)F232 (T0547)I269--(T0547)L271 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)R183--(T0547)R185 (T0547)G205--(T0547)T207 with (T0547)R183 of first strand Hbonded to align_sheets # SheetConstraint # Added 7 sheet constraints for (T0547)T156--(T0547)I157 (T0547)G181--(T0547)L182 with (T0547)I157 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)I153--(T0547)T156 (T0547)I129--(T0547)N132 with (T0547)T154 of first strand Hbonded to align_sheets # SheetConstraint # Added 25 sheet constraints for (T0547)P128--(T0547)N132 (T0547)G107--(T0547)G111 with (T0547)P128 of first strand Hbonded to align_sheets # SheetConstraint # Added 13 sheet constraints for (T0547)G107--(T0547)E109 (T0547)V82--(T0547)P84 with (T0547)G107 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)V331--(T0547)L332 (T0547)I412--(T0547)L411 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0547)E406--(T0547)H410 (T0547)V336--(T0547)L332 with (T0547)E406 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)L351--(T0547)K352 (T0547)V397--(T0547)Y396 with (T0547)L351 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)K348--(T0547)I350 (T0547)F340--(T0547)E338 with (T0547)K348 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)V325--(T0547)N328 (T0547)R323--(T0547)A326 # Added 20 sheet constraints for (T0547)V325--(T0547)N328 (T0547)R323--(T0547)A326 with (T0547)V325 of first strand Hbonded to align_sheets # SheetConstraint # Added 20 sheet constraints for (T0547)F79--(T0547)V82 (T0547)D316--(T0547)I319 with (T0547)N80 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)N305--(T0547)A307 (T0547)L275--(T0547)V277 with (T0547)N305 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)I230--(T0547)F232 (T0547)I269--(T0547)L271 with (T0547)I230 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)L224--(T0547)F227 (T0547)P178--(T0547)G181 with (T0547)E225 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)T154--(T0547)I157 (T0547)N179--(T0547)L182 with (T0547)L155 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)T154--(T0547)T156 (T0547)T130--(T0547)N132 with (T0547)T154 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)G107--(T0547)A110 (T0547)P128--(T0547)V131 with (T0547)L108 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)V82--(T0547)L85 (T0547)G107--(T0547)A110 with (T0547)Y83 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0547)I412--(T0547)K414 (T0547)L441--(T0547)R439 with (T0547)I412 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)V331--(T0547)L332 (T0547)I412--(T0547)L411 with (T0547)L332 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)E406--(T0547)L411 (T0547)V336--(T0547)V331 with (T0547)E406 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0547)L351--(T0547)K352 (T0547)V397--(T0547)Y396 with (T0547)L351 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0547)E346--(T0547)I350 (T0547)Q342--(T0547)E338 with (T0547)E346 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0547)P46--(T0547)F51 (T0547)A334--(T0547)H329 with (T0547)L47 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)N80--(T0547)V82 (T0547)I317--(T0547)I319 with (T0547)N80 of first strand Hbonded to align_sheets # SheetConstraint # Added 8 sheet constraints for (T0547)I269--(T0547)N270 (T0547)I230--(T0547)H231 with (T0547)N270 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (T0547)G252--(T0547)Y255 (T0547)H242--(T0547)K245 # Added 19 sheet constraints for (T0547)G252--(T0547)Y255 (T0547)H242--(T0547)K245 with (T0547)N253 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)L182--(T0547)V184 (T0547)I230--(T0547)F232 with (T0547)L182 of first strand Hbonded to align_sheets # SheetConstraint # Added 18 sheet constraints for (T0547)L224--(T0547)F227 (T0547)P178--(T0547)G181 with (T0547)E225 of first strand Hbonded to align_sheets # SheetConstraint # Added 27 sheet constraints for (T0547)N179--(T0547)R183 (T0547)T154--(T0547)E158 with (T0547)N179 of first strand Hbonded to align_sheets # SheetConstraint # Added 14 sheet constraints for (T0547)T154--(T0547)T156 (T0547)T130--(T0547)N132 with (T0547)T154 of first strand Hbonded to align_sheets # SheetConstraint # Added 25 sheet constraints for (T0547)P128--(T0547)N132 (T0547)G107--(T0547)G111 with (T0547)P128 of first strand Hbonded to align_sheets # SheetConstraint # Added 19 sheet constraints for (T0547)V82--(T0547)L85 (T0547)G107--(T0547)A110 with (T0547)Y83 of first strand Hbonded to align_sheets # future Constraint commands -> two_stage # future HelixConstraint commands -> two_stage # future StrandConstraint commands -> two_stage # future SheetConstraint commands -> two_stage # future Hbond commands -> two_stage # future SSbond commands -> two_stage # reading script from file T0547.648_17.730_47.rr.nn1000.constraints # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.717 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.622 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to two_stage # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.555 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.548 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.530 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.438 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.426 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to two_stage # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.400 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.395 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.391 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.392 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.388 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.385 to two_stage # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.383 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.380 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.381 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.379 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.377 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.374 to two_stage # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.371 to two_stage # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.369 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.369 to two_stage # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.369 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.368 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.365 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.364 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.361 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.361 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.359 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.355 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.356 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.355 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.353 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.352 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.352 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.352 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.352 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.347 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.348 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.347 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.346 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.344 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.344 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.338 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.338 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.338 to two_stage # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.338 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.335 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.336 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.328 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.329 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.329 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.326 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.326 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.325 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.324 to two_stage # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.322 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.323 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.322 to two_stage # Constraint # added constraint: bonus constraint((T0547)F340.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.322 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.321 to two_stage # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.320 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.320 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.318 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.318 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)N24.CB) [> -999.000 = 6.500 < 8.500] w=0.316 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.314 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.314 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.313 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.313 to two_stage # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.313 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.310 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.305 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.305 to two_stage # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.304 to two_stage # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.304 to two_stage # Constraint # added constraint: bonus constraint((T0547)F340.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.303 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.300 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.301 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.300 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.301 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.299 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.298 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.299 to two_stage # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.297 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.294 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.292 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.292 to two_stage # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.293 to two_stage # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.290 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.289 to two_stage # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.283 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.283 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.284 to two_stage # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.284 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.281 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.282 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.274 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.275 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.273 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.273 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.270 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.271 to two_stage # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.268 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.267 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.267 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.266 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.264 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.264 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.262 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.263 to two_stage # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.261 to two_stage # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.259 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.259 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.259 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.259 to two_stage # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.257 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L85.CB) [> -999.000 = 6.500 < 8.500] w=0.256 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.257 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.255 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.256 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.255 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.255 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)G143.CA) [> -999.000 = 6.500 < 8.500] w=0.254 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.253 to two_stage # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.254 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.253 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.251 to two_stage # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.249 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.250 to two_stage # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.249 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.245 to two_stage # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.245 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.244 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.243 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.244 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.243 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.243 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.244 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.243 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.242 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.243 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.241 to two_stage # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)N24.CB) [> -999.000 = 6.500 < 8.500] w=0.239 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.240 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.240 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.241 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.241 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.238 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.237 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.238 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.236 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.237 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.235 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.235 to two_stage # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.236 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.236 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.236 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.236 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.234 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.234 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.234 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.234 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.233 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.233 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.233 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.232 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.232 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.232 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)F134.CB) [> -999.000 = 6.500 < 8.500] w=0.231 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.230 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.231 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.230 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.229 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.229 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.230 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.228 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.228 to two_stage # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.228 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.225 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.226 to two_stage # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.225 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.226 to two_stage # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.225 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.224 to two_stage # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.222 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.223 to two_stage # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.224 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.222 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.221 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.219 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.219 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.220 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.219 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.219 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.219 to two_stage # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.220 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.219 to two_stage # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.219 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.219 to two_stage # Constraint # added constraint: bonus constraint((T0547)S539.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.220 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.218 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.218 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.218 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.218 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.217 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.217 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.218 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.217 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.218 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.218 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.218 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.216 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.217 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.216 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.215 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.215 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.213 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.214 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.214 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.214 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.213 to two_stage # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.213 to two_stage # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.212 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.211 to two_stage # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.212 to two_stage # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.212 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.211 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.211 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.209 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.209 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.209 to two_stage # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.210 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.210 to two_stage # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.209 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.209 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.208 to two_stage # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.208 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.209 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.206 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.207 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.207 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.207 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.207 to two_stage # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.207 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.208 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.207 to two_stage # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.205 to two_stage # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.206 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.206 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.206 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.206 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.206 to two_stage # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.207 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.206 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.207 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.206 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.204 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.205 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.203 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.203 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.204 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.204 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.205 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.203 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.201 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.202 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.201 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.202 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)K113.CB) [> -999.000 = 6.500 < 8.500] w=0.200 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.200 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L85.CB) [> -999.000 = 6.500 < 8.500] w=0.199 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.200 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.200 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.200 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.199 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.199 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.199 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.199 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.198 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.199 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.199 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.197 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.197 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.198 to two_stage # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.196 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.196 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.197 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.196 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.195 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.195 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.193 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.194 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.194 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.195 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.195 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.196 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.195 to two_stage # Constraint # added constraint: bonus constraint((T0547)S539.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.196 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.192 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.193 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.194 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.195 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.193 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.191 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.191 to two_stage # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.192 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)K135.CB) [> -999.000 = 6.500 < 8.500] w=0.191 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.192 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.191 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.191 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.192 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.190 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.191 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.191 to two_stage # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.192 to two_stage # Constraint # added constraint: bonus constraint((T0547)F340.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.191 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.190 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.190 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.190 to two_stage # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.191 to two_stage # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.191 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.189 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.190 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.189 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.189 to two_stage # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.189 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.187 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.188 to two_stage # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.186 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.187 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.187 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.188 to two_stage # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.188 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.188 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.188 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.185 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.186 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.185 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.186 to two_stage # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)I16.CB) [> -999.000 = 6.500 < 8.500] w=0.184 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.184 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.184 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.184 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.184 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.184 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.183 to two_stage # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.184 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.182 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.182 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.183 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.183 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.183 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.181 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.182 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.183 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.181 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.179 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.180 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.180 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.181 to two_stage # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.181 to two_stage # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.181 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.179 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.179 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.179 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.177 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.177 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)A114.CB) [> -999.000 = 6.500 < 8.500] w=0.178 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.178 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.178 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.179 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.179 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)E406.CB) [> -999.000 = 6.500 < 8.500] w=0.179 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.179 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.179 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.176 to two_stage # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.177 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.177 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.176 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.176 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.177 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.176 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.175 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.174 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.175 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.175 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.175 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.176 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.175 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.175 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.175 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.174 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.173 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.174 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.174 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.175 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.174 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.172 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.171 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.170 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.171 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.171 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.172 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.171 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.172 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.169 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.170 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.170 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.170 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.169 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.169 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.170 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.170 to two_stage # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.171 to two_stage # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.168 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.169 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.169 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.168 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.168 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.169 to two_stage # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.170 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.168 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.168 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.166 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.167 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.167 to two_stage # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)F134.CB) [> -999.000 = 6.500 < 8.500] w=0.168 to two_stage # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.168 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.168 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.169 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.167 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.167 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.167 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.168 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.167 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.165 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.166 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.166 to two_stage # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.166 to two_stage # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.167 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.165 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.165 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.166 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.166 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.166 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.164 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.165 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.163 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.163 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.164 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.164 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.165 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.166 to two_stage # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.166 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.165 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.165 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.164 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.165 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.163 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.164 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.164 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.164 to two_stage # Constraint # added constraint: bonus constraint((T0547)D501.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.164 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.162 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.163 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.163 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.163 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.162 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.163 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.163 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.161 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I140.CB) [> -999.000 = 6.500 < 8.500] w=0.161 to two_stage # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.161 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.161 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.161 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.162 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.162 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.162 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.160 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.161 to two_stage # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.161 to two_stage # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.161 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.161 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.161 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.162 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.160 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.160 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.160 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)K113.CB) [> -999.000 = 6.500 < 8.500] w=0.159 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.159 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.160 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.160 to two_stage # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.160 to two_stage # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.159 to two_stage # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)E406.CB) [> -999.000 = 6.500 < 8.500] w=0.159 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.158 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.158 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.159 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.157 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.157 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.158 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.158 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.157 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.157 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.157 to two_stage # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.157 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.157 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.158 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.158 to two_stage # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.155 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.155 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.156 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.156 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.155 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.155 to two_stage # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.156 to two_stage # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.156 to two_stage # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.156 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.154 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.154 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.155 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.153 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.154 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.153 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.153 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.154 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.154 to two_stage # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.152 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.153 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.153 to two_stage # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.154 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.153 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.153 to two_stage # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.153 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.153 to two_stage # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.152 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.153 to two_stage # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.154 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.152 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.153 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.151 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.151 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.152 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.153 to two_stage # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.151 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.150 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.150 to two_stage # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.151 to two_stage # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.152 to two_stage # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.150 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.150 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.150 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.149 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.149 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.150 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.149 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.150 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.148 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.149 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.150 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.148 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.149 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.150 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.148 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.148 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.149 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.148 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.148 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.149 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.149 to two_stage # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.149 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.148 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.148 to two_stage # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.148 to two_stage # Constraint # added constraint: bonus constraint((T0547)E12.CB, (T0547)N24.CB) [> -999.000 = 6.500 < 8.500] w=0.146 to two_stage # Constraint # added constraint: bonus constraint((T0547)E12.CB, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.147 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.146 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.147 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.146 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.146 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.146 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.146 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.147 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.146 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.147 to two_stage # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.147 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.146 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.146 to two_stage # Constraint # added constraint: bonus constraint((T0547)L574.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.147 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I167.CB) [> -999.000 = 6.500 < 8.500] w=0.146 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.146 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.146 to two_stage # Constraint # added constraint: bonus constraint((T0547)E12.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.144 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.144 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.144 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.144 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.144 to two_stage # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.145 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.144 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.144 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.144 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.145 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.145 to two_stage # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.144 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.145 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.145 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.145 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.143 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)K113.CB) [> -999.000 = 6.500 < 8.500] w=0.143 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.143 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.144 to two_stage # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.144 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.143 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)E406.CB) [> -999.000 = 6.500 < 8.500] w=0.143 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.144 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.143 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.140 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.140 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.140 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.140 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)N201.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.139 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.139 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.139 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.140 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.139 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.140 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.140 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.140 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.139 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.140 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.139 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.139 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.140 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.140 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.139 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.139 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)E542.CB) [> -999.000 = 6.500 < 8.500] w=0.140 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.137 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.137 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.137 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.136 to two_stage # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.137 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.137 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.137 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.136 to two_stage # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.137 to two_stage # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)E406.CB) [> -999.000 = 6.500 < 8.500] w=0.137 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.136 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.136 to two_stage # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.137 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.137 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.136 to two_stage # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.136 to two_stage # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.134 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.136 to two_stage # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.136 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.137 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.137 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.136 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.136 to two_stage # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.134 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.134 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.133 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.134 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)L85.CB) [> -999.000 = 6.500 < 8.500] w=0.133 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.134 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.134 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.134 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.134 to two_stage # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.134 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.134 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.134 to two_stage # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.133 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.132 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.133 to two_stage # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.133 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.131 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.132 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.132 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.132 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.132 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.133 to two_stage # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.132 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.133 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.133 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.133 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.133 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.133 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)K415.CB) [> -999.000 = 6.500 < 8.500] w=0.134 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.134 to two_stage # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.132 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.132 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.132 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.131 to two_stage # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.132 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.131 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.131 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.131 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.132 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.132 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)N80.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L85.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.131 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.131 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)P243.CB) [> -999.000 = 6.500 < 8.500] w=0.131 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.131 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.128 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.128 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)V215.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.128 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)V522.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.127 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.127 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.127 to two_stage # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.128 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.128 to two_stage # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.128 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.128 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)A307.CB) [> -999.000 = 6.500 < 8.500] w=0.128 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.128 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.128 to two_stage # Constraint # added constraint: bonus constraint((T0547)I578.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.127 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.127 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.127 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.127 to two_stage # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.127 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.128 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.128 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.128 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)A114.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)K113.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.127 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.127 to two_stage # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.127 to two_stage # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.127 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0547)L596.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)R402.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)E521.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.121 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.121 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.121 to two_stage # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.121 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)K135.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.121 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0547)E125.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.121 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.121 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.121 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0547)A263.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0547)A405.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.121 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.121 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.121 to two_stage # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)L160.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)L391.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)V522.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)Q554.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)R70.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L160.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)A405.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0547)I578.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)K286.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)A263.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)K493.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)Q281.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)F282.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)K283.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)F134.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)G143.CA) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)H187.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)S490.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)I570.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)G126.CA) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)G192.CA) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)I200.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)N201.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y25.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)L160.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)K286.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q281.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)Q354.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G192.CA) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)F134.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)A263.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)I193.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)R70.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)S341.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)S485.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)N284.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)W454.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)L593.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I167.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)I200.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)N80.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)L85.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)K113.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)K353.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)R402.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)N284.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)S490.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)K283.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)E285.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L523.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)L593.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)L394.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)A307.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G192.CA) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)I193.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)K353.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)L391.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)R402.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)G455.CA, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)S490.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)E521.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)L574.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)K493.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)L85.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)G77.CA) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)H187.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)G455.CA, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)E488.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)L420.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)S403.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0547)E314.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)K415.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)S449.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)K493.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)K304.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)I15.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)I193.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)K286.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)K286.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)K415.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)I570.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)E162.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)N80.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)I15.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)N201.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)K135.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)E115.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)F14.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)I16.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)Y90.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)K245.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)I15.CB, (T0547)N24.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L85.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)N201.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)F134.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)Q354.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)S341.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)E346.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L391.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)E406.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)A263.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)K286.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)A307.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)E314.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)S403.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)R70.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I167.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)H187.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)N201.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)A114.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)N123.CB, (T0547)F134.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)L160.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)E162.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)I200.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)A263.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)E278.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)Q554.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)N80.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)R70.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)R70.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)G192.CA) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I193.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)K245.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)K353.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)F444.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)K493.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)S341.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)F447.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)F282.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)A307.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L420.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)S403.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)I489.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)E488.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)K493.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)V215.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)I200.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)E521.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)M525.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)N11.CB, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)F73.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)E162.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)F73.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)F73.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)I193.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)V215.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)K245.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)L394.CB, (T0547)E406.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)E406.CB, (T0547)Q424.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)N425.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)L446.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q458.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)V436.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)I489.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)Q554.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)I540.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)N123.CB, (T0547)K135.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)N161.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)I16.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)V191.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)Q342.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)F282.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L391.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)V397.CB, (T0547)E406.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)L523.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)V522.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)K493.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)W454.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L446.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)I592.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)N404.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)S485.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)E488.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)G524.CA) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y597.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I140.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)N105.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)V21.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)I15.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)A114.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I140.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)K171.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)G252.CA) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L394.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)N404.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)E285.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)R577.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)N124.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)N80.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)G143.CA) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)F174.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)E162.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)G199.CA, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)I417.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)P176.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)Q354.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)Q354.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)S341.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)T256.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)P472.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)E521.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)I570.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)I578.CB, (T0547)L593.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)A427.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)G455.CA, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)N459.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)K283.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)K304.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L389.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)L420.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)I417.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)I417.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)Y363.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)L399.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)N404.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)N404.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)A405.CB, (T0547)Q424.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)V522.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)V522.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)E488.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)V522.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)S539.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)Y605.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)I570.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)I578.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)N221.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)N123.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)I16.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)V35.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)G143.CA) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)I15.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)G143.CA) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)K245.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)G101.CA, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)V191.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)P176.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)W454.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)F447.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)Q554.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)M525.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)P472.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)N13.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)V191.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)F73.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)M120.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)N124.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)G199.CA, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)L223.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)L117.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)F73.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)V215.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)N289.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q281.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)F599.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)K543.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)V522.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)L523.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)F599.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)A431.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L446.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)I489.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)P472.CB, (T0547)S485.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)S341.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)E314.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L385.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)V442.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)D469.CB, (T0547)S485.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)D494.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)I489.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)I489.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)L574.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L523.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)V522.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)F599.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)K95.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)F134.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)V35.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)K113.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)N221.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)P243.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)H187.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)I200.CB, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)N221.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)E278.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)F14.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)K310.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)I306.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)I306.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)E346.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)L391.CB, (T0547)N404.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)L446.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)S485.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)A431.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)W454.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)F444.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)F444.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)L456.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)L456.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)Q520.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)M571.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)L523.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)V522.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)E521.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)L399.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)H187.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)Q89.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G192.CA) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)G101.CA, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I140.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)V215.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)E250.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I140.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)N105.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)I169.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)E361.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L394.CB, (T0547)N404.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)K310.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L313.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)K310.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)K286.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)E346.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)P356.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)P356.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)L391.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q458.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)Y519.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)V504.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)K526.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)M525.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)I551.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)L430.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)F447.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)V442.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)E148.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)G150.CA, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)G199.CA, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)V21.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)V21.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)I193.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)K44.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L223.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)P176.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)H187.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)L160.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)G252.CA) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)I15.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)G455.CA, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)G455.CA, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)Q458.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)Y519.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)D466.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)L574.CB, (T0547)L593.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)I570.CB, (T0547)L593.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L574.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)E346.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)K310.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I306.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)L391.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)L399.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)I417.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)L365.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)K495.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)P496.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)S485.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)K113.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)K493.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)A431.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)V442.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)L430.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q424.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)K495.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)L523.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L593.CB, (T0547)Y605.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L394.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)F282.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)L313.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)K304.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L313.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)S280.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)Y90.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)N88.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)N221.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)Y90.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)G126.CA) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)E346.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L378.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)Y377.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)L378.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)L420.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)K493.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)Y519.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)E595.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)I570.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)F447.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)K304.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)P356.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)L523.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)R577.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)K589.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)I578.CB, (T0547)F599.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)T473.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)A431.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)L456.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)G455.CA, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)A114.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)N123.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)M120.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)V191.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)C22.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)K36.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I167.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L223.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)N201.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)G199.CA, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)E250.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)G252.CA) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)N88.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)R70.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)N11.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)V35.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)I15.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)A114.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)A121.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q458.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)Q424.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)M525.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)S492.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)L593.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I540.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I550.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)Y605.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)F599.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)E278.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)P176.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I169.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)F174.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)A307.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)K310.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)E250.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)N221.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)P356.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)L378.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)K415.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)L420.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)L420.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)R259.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q437.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)N459.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)I489.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)D494.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)P496.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)K495.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)A431.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)P461.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)F447.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)W454.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)T473.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)P472.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)P496.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)D494.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)Q588.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)K370.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)L385.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)L378.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L375.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)Y377.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)L399.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)L411.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)V397.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)K493.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)S581.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I578.CB, (T0547)Q588.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)G78.CA) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)N88.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)N105.CB, (T0547)A114.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)K135.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)L160.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)V35.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)E115.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)N221.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)V215.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)S202.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)N508.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)M525.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)V584.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)E257.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)L378.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)K415.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)A431.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)V442.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)N443.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)S449.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)F447.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)Q342.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)L365.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)S372.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)D398.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)T473.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)V522.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)E457.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)E521.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)V522.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)N105.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)A121.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)N124.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)I15.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)V35.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)M120.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A121.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)V215.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)L223.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)P176.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)E125.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)A147.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)P176.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)K36.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)P176.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)N201.CB, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)N201.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)N221.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)N221.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)A374.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)L375.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)L378.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)L394.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L391.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)L411.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)G524.CA) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)E542.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)M525.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)M525.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)M525.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)Q554.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)S492.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)R577.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)L593.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)I573.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L574.CB, (T0547)F599.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)F447.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)L456.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)P496.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)P496.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)S341.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L391.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)L399.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)R402.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L394.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)N289.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)S372.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)H379.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)S372.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)Y377.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)Y377.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)L394.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)K495.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)A374.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)A374.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)L375.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)E376.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)K310.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)W454.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q458.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)N459.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)T473.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)K495.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)Q520.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)R259.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)E278.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)S202.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)N221.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)P496.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L365.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)L375.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)L391.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)K370.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)K370.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)K415.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)S341.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)Y366.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)L391.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)I306.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)P356.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)Y377.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)L411.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L418.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)Y366.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)I551.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)N221.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)K17.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)C22.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)L38.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)R39.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)G77.CA) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)N80.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)Q89.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)G126.CA) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)Q89.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)N123.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)V35.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)G19.CA) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)N124.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)G126.CA) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)K495.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)D466.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)D501.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)E542.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)I489.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)D469.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)R577.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)A569.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I169.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)S202.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)Q354.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)F282.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)L217.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)E257.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)N88.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)K175.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I551.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y565.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)N575.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)R577.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y491.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L593.CB, (T0547)N603.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)A263.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L411.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)Q354.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)L365.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)K367.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)L365.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)Y377.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L411.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)L375.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)A374.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)A263.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)Y363.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)K367.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)A374.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)P461.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)P461.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L217.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)T473.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)E457.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)D466.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)C22.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)L38.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y25.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)N124.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)N124.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)M120.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)L223.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)K286.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)P243.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)Y519.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)Q520.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)V522.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)E542.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)N373.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)M571.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)L557.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)I551.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)A553.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y565.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y565.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y565.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)N88.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)Y90.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)L38.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)V21.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)C22.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)K175.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)N24.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)N88.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)M120.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)P176.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)I169.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)F174.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)N24.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)N11.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)K36.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)K36.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)C22.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)K175.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)L223.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)L223.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)T239.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)P461.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)I302.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)K353.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)E361.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)L411.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)L418.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)L217.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)P472.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)K423.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)D466.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)E471.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)D466.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)D501.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)I551.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)A553.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)Q588.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)R577.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)S581.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)Y366.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)L394.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)L420.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)F282.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)E257.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)N249.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)N289.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)K495.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)K495.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)A553.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)R577.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)Q458.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)P496.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)V504.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)Q554.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)L583.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)Q354.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)S368.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)Y366.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)R39.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)R39.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)I169.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)I169.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)G92.CA) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)K95.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)P356.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)R293.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)D466.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)E470.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)E457.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)V522.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)I551.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)P472.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)D558.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)G544.CA, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)A569.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)V584.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)E257.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)L38.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)N24.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)E72.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)A569.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)D562.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)K589.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)R293.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)N124.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)Q309.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L411.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)N373.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.015 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.015 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)E470.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)D469.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)E470.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y565.CB, (T0547)R577.CB) [> -999.000 = 6.500 < 8.500] w=0.018 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)P91.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.015 to two_stage # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.015 to two_stage # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)L583.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((T0547)V584.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.015 to two_stage # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.015 to two_stage # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.015 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)N459.CB) [> -999.000 = 6.500 < 8.500] w=0.015 to two_stage # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.015 to two_stage # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.013 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.014 to two_stage # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.014 to two_stage # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.014 to two_stage # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.014 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.013 to two_stage # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)Q309.CB) [> -999.000 = 6.500 < 8.500] w=0.013 to two_stage # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.013 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.014 to two_stage # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.014 to two_stage # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.015 to two_stage # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)L557.CB) [> -999.000 = 6.500 < 8.500] w=0.015 to two_stage # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.013 to two_stage # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.013 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)D469.CB) [> -999.000 = 6.500 < 8.500] w=0.014 to two_stage # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.014 to two_stage # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.013 to two_stage # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.013 to two_stage # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.013 to two_stage # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.013 to two_stage # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.013 to two_stage # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.013 to two_stage # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.014 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.013 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.013 to two_stage # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.012 to two_stage # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.012 to two_stage # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.012 to two_stage # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.012 to two_stage # Constraint # added constraint: bonus constraint((T0547)M525.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.012 to two_stage # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.011 to two_stage # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.012 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.012 to two_stage # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.011 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)Q554.CB) [> -999.000 = 6.500 < 8.500] w=0.010 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.008 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.008 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.008 to two_stage # Constraint # added constraint: bonus constraint((T0547)N297.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.006 to two_stage # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)L557.CB) [> -999.000 = 6.500 < 8.500] w=0.005 to two_stage # future Constraint commands -> nn1000 # future HelixConstraint commands -> nn1000 # future StrandConstraint commands -> nn1000 # future SheetConstraint commands -> nn1000 # future Hbond commands -> nn1000 # future SSbond commands -> nn1000 # reading script from file nn1000.constraints # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.970 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.967 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.960 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.959 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.956 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.954 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.954 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.954 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.947 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.945 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.944 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.944 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.943 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.943 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.941 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.939 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.934 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.933 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.932 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.933 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.932 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.932 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.931 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.931 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.929 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.929 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.927 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.928 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.926 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.926 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.925 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.923 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.924 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.923 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.923 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.920 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.919 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.920 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.921 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.920 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.918 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.918 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.918 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.917 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.915 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.916 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.915 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.916 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.914 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.914 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.914 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.912 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.912 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.911 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.911 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.911 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.906 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.907 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.908 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.906 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.905 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.903 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.904 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.903 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.904 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.900 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.899 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.899 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.898 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.898 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.898 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.897 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.896 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.895 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.896 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.897 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.896 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.894 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.894 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.894 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.895 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.895 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.894 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.893 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.893 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.892 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.893 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.893 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.890 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.891 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.889 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.888 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.889 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.886 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.887 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.887 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.886 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.887 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.884 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.885 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.885 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.883 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.883 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.883 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.883 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.882 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.882 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.880 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.879 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.878 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.878 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.877 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.878 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.875 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.876 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.874 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.873 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.874 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.874 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.873 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.872 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.870 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.870 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.870 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.870 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.868 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.869 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.868 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.868 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.869 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.867 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.866 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.865 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.866 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.866 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.866 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.865 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.864 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.862 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.863 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.863 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.861 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.861 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.860 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.860 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.860 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.858 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.859 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.859 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.857 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.857 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.857 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.857 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.856 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.854 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.853 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.853 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.854 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.854 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.854 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.853 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.853 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.853 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.853 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.851 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.850 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.849 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.848 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.849 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.847 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.846 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.847 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.845 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.845 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.846 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.846 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.843 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.844 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.843 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.843 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.844 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.844 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.842 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.843 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.841 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.841 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.841 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.841 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.841 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.840 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.841 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.841 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.840 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.838 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.839 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.837 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.837 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.838 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.837 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.837 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.838 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.836 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.836 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.836 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.837 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.835 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.834 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.835 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.835 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.836 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.835 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.835 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.834 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.834 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.834 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.833 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.833 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.832 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.833 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.833 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.831 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.830 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.831 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.829 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.829 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.829 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.829 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.827 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.828 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.828 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.826 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.826 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.826 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.827 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.823 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.823 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.823 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.823 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.823 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.822 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.821 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.821 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.822 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.821 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.822 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.819 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.819 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.819 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.819 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.819 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.820 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.819 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.820 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.816 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.817 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.818 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.818 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.816 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.817 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.817 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.816 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.816 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.816 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.816 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.815 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.816 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.814 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.813 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.812 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.812 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.811 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.811 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.812 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.813 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.811 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.810 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.809 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.809 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.810 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.809 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.808 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.808 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.809 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.807 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.807 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.808 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.805 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.805 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)L160.CB) [> -999.000 = 6.500 < 8.500] w=0.804 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.803 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.804 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.804 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.805 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.803 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.803 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.804 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.802 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.802 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.801 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.802 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.803 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.801 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.801 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.801 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.801 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.801 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.801 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.801 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.800 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.798 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.799 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.797 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.797 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.797 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.798 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.798 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.798 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.796 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.797 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.794 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.795 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.796 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.795 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.795 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.795 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.794 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.793 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.793 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.793 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.792 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.793 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.793 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.794 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.792 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.791 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.792 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.792 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.791 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.792 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.792 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L160.CB) [> -999.000 = 6.500 < 8.500] w=0.790 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.791 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.789 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.790 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.791 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.790 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.788 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.788 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.788 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.788 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.789 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.789 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.786 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.787 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.788 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.788 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.788 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.789 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.788 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.785 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.785 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.785 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.785 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.786 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.786 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.786 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.787 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.785 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.785 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)E542.CB) [> -999.000 = 6.500 < 8.500] w=0.785 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L574.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.786 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.784 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.784 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.782 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.782 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.782 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.783 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.779 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)L160.CB) [> -999.000 = 6.500 < 8.500] w=0.780 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.779 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.779 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.780 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.780 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)I16.CB) [> -999.000 = 6.500 < 8.500] w=0.779 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.780 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.780 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.781 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.779 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.779 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.779 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.777 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.777 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.777 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.778 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.776 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.776 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.776 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.776 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.777 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S539.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.777 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.774 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.774 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.775 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.775 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.774 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.775 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.773 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.772 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.772 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.772 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.771 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.772 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.770 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.770 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.771 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.770 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.770 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.770 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.770 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.771 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.769 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.769 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.769 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.769 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.768 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.768 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.768 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.769 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.769 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.767 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.767 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.768 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.766 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.765 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.766 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.766 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.765 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.766 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.766 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.766 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.766 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)V522.CB) [> -999.000 = 6.500 < 8.500] w=0.766 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.766 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.766 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I140.CB) [> -999.000 = 6.500 < 8.500] w=0.765 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.765 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.765 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.764 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)I193.CB) [> -999.000 = 6.500 < 8.500] w=0.764 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.764 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.764 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.763 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.763 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.762 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.763 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.763 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.761 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.761 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.762 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.762 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.762 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.761 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.762 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.760 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.760 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.760 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.760 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.758 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.758 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.759 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.758 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.759 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.759 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.757 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.757 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.756 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.757 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.757 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.757 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.757 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.757 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.755 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.755 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.754 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.754 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.754 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.755 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)N221.CB) [> -999.000 = 6.500 < 8.500] w=0.755 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.755 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.755 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.756 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.754 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.753 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.753 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.754 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V522.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.754 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.753 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.751 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.751 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.752 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.752 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.752 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.752 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.753 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.750 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.751 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.751 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.751 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.751 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.751 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.750 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.750 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.751 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.749 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.749 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.750 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.749 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.749 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.749 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.749 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)A307.CB) [> -999.000 = 6.500 < 8.500] w=0.749 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.749 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.748 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I578.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.749 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.746 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.747 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.747 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.748 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.745 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.746 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.746 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.747 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.747 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.747 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I570.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.746 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L574.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.747 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.745 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.746 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.745 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)F282.CB) [> -999.000 = 6.500 < 8.500] w=0.745 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.744 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.745 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.744 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.745 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.743 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.742 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.741 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.742 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.743 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.743 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.743 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.743 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.743 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.743 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.743 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.741 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.741 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.741 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.741 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.738 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.739 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.739 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.740 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.740 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.738 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.738 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.738 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.738 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.739 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.738 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.738 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.738 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.739 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.739 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.737 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.738 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L85.CB) [> -999.000 = 6.500 < 8.500] w=0.736 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.737 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.737 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.737 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.735 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.735 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.733 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.734 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.735 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.735 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.734 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.733 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.733 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.732 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.733 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.733 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.734 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.734 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.734 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.734 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.733 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.734 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K171.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.733 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.731 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.732 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)L223.CB) [> -999.000 = 6.500 < 8.500] w=0.732 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.733 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.732 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.732 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.730 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.730 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.731 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.731 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.731 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.730 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.731 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.732 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.729 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.729 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.729 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.729 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.729 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.728 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.729 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.729 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.729 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.729 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.729 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.729 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.729 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.725 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.726 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.727 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.726 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.727 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.727 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.727 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.728 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.728 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.726 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.727 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.727 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.724 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.724 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.725 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.725 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.723 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.723 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.724 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.724 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L593.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.725 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.723 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.723 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.722 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.723 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.723 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.723 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.721 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.722 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.722 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.723 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.724 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.721 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.722 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.722 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.722 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.722 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.721 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.721 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.722 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.719 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.720 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.720 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.719 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.719 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.720 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.721 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I570.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.721 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.717 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.717 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.717 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.717 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.718 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.718 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.718 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.719 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.719 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.719 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.717 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.717 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.717 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.716 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.717 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.718 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.716 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.717 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.716 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L85.CB) [> -999.000 = 6.500 < 8.500] w=0.716 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.716 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.716 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.716 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.717 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.714 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.716 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.714 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.714 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.714 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.714 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.714 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.714 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.712 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.712 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.713 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.712 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.712 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.713 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.713 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.713 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.711 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.711 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.712 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.712 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.712 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.710 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.710 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.710 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.710 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L596.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.711 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.710 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.708 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.709 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.709 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)P176.CB) [> -999.000 = 6.500 < 8.500] w=0.708 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.709 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.708 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.709 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.709 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.709 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.709 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.709 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.709 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.709 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.709 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.707 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.707 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)N124.CB) [> -999.000 = 6.500 < 8.500] w=0.707 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.707 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.708 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.708 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.708 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.707 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.707 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.707 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.704 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.704 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.704 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.705 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.705 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.704 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.703 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.704 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.704 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.702 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.702 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.702 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.702 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.702 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.702 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.702 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.703 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.700 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.700 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.700 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.700 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.701 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.702 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.703 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.702 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)M571.CB) [> -999.000 = 6.500 < 8.500] w=0.703 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.701 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.701 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.700 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.701 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.701 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.700 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.699 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.699 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.700 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.700 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.700 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.700 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.698 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.699 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.698 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.698 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.696 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.697 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.696 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.696 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.697 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.697 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.698 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.696 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.696 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.696 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F340.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.697 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.698 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.695 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.696 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.694 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.695 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.695 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.695 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.696 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.696 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.695 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.695 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.696 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.695 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)N24.CB) [> -999.000 = 6.500 < 8.500] w=0.693 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.694 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.694 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.693 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.694 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.694 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.693 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.693 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.693 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.694 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.693 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.693 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.692 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.692 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.692 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.692 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.692 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.693 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.691 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.691 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.691 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.689 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.689 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.690 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.690 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.691 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.691 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.692 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.690 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.689 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.690 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.689 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.688 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.689 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.689 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.690 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.688 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.688 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.688 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.688 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.689 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.686 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.686 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.687 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.687 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.687 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.687 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.687 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.686 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.686 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.685 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.685 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.686 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.686 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.686 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.686 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.683 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.684 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.684 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.684 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.685 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.682 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.683 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.683 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.683 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.683 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.684 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.681 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.682 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.681 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.682 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.682 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.682 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.681 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.682 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)K286.CB) [> -999.000 = 6.500 < 8.500] w=0.682 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.682 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.681 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.681 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.681 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I578.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.682 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.680 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.680 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.679 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.680 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.680 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.679 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.680 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.680 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.679 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.680 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.678 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.679 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.679 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.678 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.679 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.677 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.677 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.678 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.679 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.679 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)F282.CB) [> -999.000 = 6.500 < 8.500] w=0.677 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.678 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.678 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.677 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.676 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.675 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.676 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.677 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.678 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.675 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.676 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.675 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.675 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.675 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.675 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.673 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.673 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.674 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.674 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.674 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.674 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.675 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.674 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.675 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.675 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.675 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.675 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.675 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.676 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.676 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.676 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.673 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.674 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.674 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.674 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.674 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.673 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.673 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.673 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.672 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.672 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.672 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.673 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.673 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.671 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.672 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.672 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.673 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.671 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.671 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.672 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.672 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.673 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.671 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I578.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.671 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.671 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.671 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.671 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.671 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.668 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.668 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.668 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.668 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.667 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.665 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.666 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.667 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)I193.CB) [> -999.000 = 6.500 < 8.500] w=0.667 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.666 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.667 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.667 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.668 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.668 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.667 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.666 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.667 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.667 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.667 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.667 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.667 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.665 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.665 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.665 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.665 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.665 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.666 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.666 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.664 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.664 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.665 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.664 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.665 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.662 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.663 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.663 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.664 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.663 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.664 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.663 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.664 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.663 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.662 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.663 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)K310.CB) [> -999.000 = 6.500 < 8.500] w=0.662 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.662 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)L399.CB) [> -999.000 = 6.500 < 8.500] w=0.663 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L523.CB) [> -999.000 = 6.500 < 8.500] w=0.663 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.662 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.662 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.663 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.661 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.661 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.662 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.661 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.662 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.662 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.660 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.660 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.660 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.660 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.661 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.660 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.660 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.658 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.660 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.661 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.661 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)R577.CB) [> -999.000 = 6.500 < 8.500] w=0.661 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)L456.CB) [> -999.000 = 6.500 < 8.500] w=0.660 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.660 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.658 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)R577.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.657 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.658 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.657 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.657 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.658 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.657 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.657 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.658 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.658 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.658 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.657 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)I15.CB) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.655 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.655 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.655 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.655 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.655 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.654 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.655 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.655 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.655 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.654 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.654 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.653 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.653 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.653 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.653 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.653 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.654 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.653 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.654 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.653 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)K310.CB) [> -999.000 = 6.500 < 8.500] w=0.654 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.654 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.654 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.655 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.653 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.653 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.651 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.651 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.651 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.653 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.653 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.653 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G192.CA) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L85.CB) [> -999.000 = 6.500 < 8.500] w=0.650 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.650 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.651 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.651 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.650 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.651 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.650 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.650 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.650 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.650 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.650 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.649 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)P176.CB) [> -999.000 = 6.500 < 8.500] w=0.649 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.649 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)H187.CB) [> -999.000 = 6.500 < 8.500] w=0.649 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.649 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.650 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.646 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)R70.CB) [> -999.000 = 6.500 < 8.500] w=0.646 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.646 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)P176.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.646 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.645 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.646 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.645 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.645 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.645 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.646 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.645 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.645 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.645 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.643 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.645 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L523.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.645 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.643 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.645 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.643 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.643 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.642 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.642 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.643 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.643 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.643 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.642 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.643 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.642 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.643 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.643 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.643 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.642 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.640 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.640 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.641 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.640 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.641 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.641 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)N24.CB) [> -999.000 = 6.500 < 8.500] w=0.638 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.639 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.639 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)F134.CB) [> -999.000 = 6.500 < 8.500] w=0.640 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.640 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.641 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.641 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.641 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.642 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.642 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.642 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.642 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.641 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.640 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.640 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.641 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.640 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.639 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.639 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.639 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.639 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.639 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.638 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.638 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.638 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)F134.CB) [> -999.000 = 6.500 < 8.500] w=0.638 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.639 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.639 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.639 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.638 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.638 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)V215.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.638 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.636 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.638 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.638 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.636 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.636 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.636 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)V522.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G544.CA, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.636 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L574.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)I16.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.636 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.636 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.636 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.636 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.633 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.633 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.633 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)I15.CB) [> -999.000 = 6.500 < 8.500] w=0.631 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.631 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.632 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.632 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.632 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.631 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.632 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.632 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.632 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.632 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.633 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.633 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.633 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.632 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.632 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.633 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.630 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.630 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.630 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.631 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.631 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.631 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.630 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.631 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.630 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.630 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.631 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.630 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.631 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.630 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.631 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.631 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.630 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.630 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.628 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.628 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.628 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.630 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)F14.CB) [> -999.000 = 6.500 < 8.500] w=0.627 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)F73.CB) [> -999.000 = 6.500 < 8.500] w=0.627 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.628 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.628 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.628 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.628 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.627 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.628 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.628 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)S490.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.627 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.627 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.627 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.628 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.621 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.622 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.622 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.622 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.622 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)Q588.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.622 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.621 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.622 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L85.CB) [> -999.000 = 6.500 < 8.500] w=0.620 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.619 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.620 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.620 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.621 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.620 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.621 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.622 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.621 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.622 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.621 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.621 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.620 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.619 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.619 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.619 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.619 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.619 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)L160.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)K286.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)P496.CB) [> -999.000 = 6.500 < 8.500] w=0.619 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.614 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.614 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.614 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.614 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.614 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)K286.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.614 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.613 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.614 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.614 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.614 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.614 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.613 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.613 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.614 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.612 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.612 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.613 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.613 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.613 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.612 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.613 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.611 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G455.CA, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.612 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.612 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.613 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.613 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.613 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.613 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L574.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.613 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.611 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.611 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.612 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.611 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.611 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.611 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)E406.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)Q520.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)V522.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.608 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.608 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E521.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V522.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.608 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.608 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.608 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.608 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.608 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)P176.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.605 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.605 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.604 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.604 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.605 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.604 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.604 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.604 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M525.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.605 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L574.CB, (T0547)L593.CB) [> -999.000 = 6.500 < 8.500] w=0.605 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.604 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.604 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)N80.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I578.CB, (T0547)L593.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K304.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F340.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.598 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.598 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)V522.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y597.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.598 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.598 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.598 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)L593.CB) [> -999.000 = 6.500 < 8.500] w=0.598 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.598 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.595 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.595 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.593 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.594 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.595 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.595 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.595 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.595 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.594 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.595 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.594 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.593 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.593 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.594 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.595 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.593 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.594 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.593 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.594 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)Q354.CB) [> -999.000 = 6.500 < 8.500] w=0.593 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.594 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.595 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)Q554.CB) [> -999.000 = 6.500 < 8.500] w=0.595 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.593 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.593 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.593 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.593 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S539.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.594 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.594 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.593 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)I489.CB) [> -999.000 = 6.500 < 8.500] w=0.591 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.591 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.590 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.591 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.591 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.591 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.590 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)A114.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.590 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.590 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.590 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.591 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)K286.CB) [> -999.000 = 6.500 < 8.500] w=0.590 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.590 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.591 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.590 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.590 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)I15.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)A569.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)P243.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D466.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)E542.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)S581.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I570.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I167.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)H187.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)A307.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R293.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)A569.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A263.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)V21.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)S490.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)R577.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I306.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)I489.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)R70.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)L160.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)K175.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)K286.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E488.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A263.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P472.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)C22.CB) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I570.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q281.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)R402.CB) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.566 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.566 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.566 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.565 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.565 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.566 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.565 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.563 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.565 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.565 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.565 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.565 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.565 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.565 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.563 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.563 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I140.CB) [> -999.000 = 6.500 < 8.500] w=0.563 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.563 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.563 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)K245.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.563 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.563 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.563 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.563 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)N13.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.559 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)F134.CB) [> -999.000 = 6.500 < 8.500] w=0.559 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)E162.CB) [> -999.000 = 6.500 < 8.500] w=0.559 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)E162.CB) [> -999.000 = 6.500 < 8.500] w=0.559 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.559 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R293.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.559 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.559 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.559 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.559 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.559 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)S581.CB) [> -999.000 = 6.500 < 8.500] w=0.559 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)H187.CB) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.559 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.556 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.556 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.555 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.556 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.556 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.556 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)E250.CB) [> -999.000 = 6.500 < 8.500] w=0.556 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.556 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.556 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.556 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.555 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)N404.CB) [> -999.000 = 6.500 < 8.500] w=0.556 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.556 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.555 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.556 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.555 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.556 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.555 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.555 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.555 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K304.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.555 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.553 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.555 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.555 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.555 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I592.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.555 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.553 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.553 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.553 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.553 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E12.CB, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I15.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.552 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.553 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.553 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.552 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.552 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.552 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.553 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.553 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)N123.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.552 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.552 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.552 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.552 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.552 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)I417.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)Q424.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)Y519.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)K135.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)K493.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.546 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.546 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)F282.CB) [> -999.000 = 6.500 < 8.500] w=0.546 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.546 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.546 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)L365.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)E257.CB) [> -999.000 = 6.500 < 8.500] w=0.545 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.546 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)N404.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.546 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.546 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.546 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)F599.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.545 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.546 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.546 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)N80.CB) [> -999.000 = 6.500 < 8.500] w=0.545 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.545 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.545 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)G143.CA) [> -999.000 = 6.500 < 8.500] w=0.546 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.545 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.545 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.545 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.545 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.545 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.546 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.545 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.545 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.541 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.541 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I193.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L394.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N249.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.541 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.541 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.541 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.541 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.541 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)A374.CB) [> -999.000 = 6.500 < 8.500] w=0.541 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.541 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V522.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.541 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)R577.CB) [> -999.000 = 6.500 < 8.500] w=0.541 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.541 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.541 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)L523.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)I16.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)V215.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)N221.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)R402.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)F14.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)A114.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)Q354.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)L365.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)E406.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)Q520.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)L365.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)Y377.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)Y90.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P472.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.533 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.530 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)L399.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)Q588.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y565.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.530 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.530 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)K175.CB) [> -999.000 = 6.500 < 8.500] w=0.530 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)G143.CA) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.530 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)K286.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)K283.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)D398.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)T473.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)K495.CB) [> -999.000 = 6.500 < 8.500] w=0.530 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E488.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)N201.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.528 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)K113.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)N80.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)Q89.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E488.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)E162.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M525.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)P461.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I169.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D466.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)Y377.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)Y377.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)I489.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)E406.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I570.CB, (T0547)L593.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)E285.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I578.CB, (T0547)F599.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I537.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)K36.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)N221.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)E278.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)Q309.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L394.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)K310.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)K493.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K493.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)Q342.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)Q281.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)Q354.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)K135.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)V215.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L223.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)L375.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)N404.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)L411.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L394.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)E521.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)K353.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)P496.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E521.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y565.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)N88.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E115.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L418.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)Y377.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G455.CA, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)A121.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)N201.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M525.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)Q554.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L420.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)P496.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V522.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S539.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)V21.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)V35.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)R70.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)Q89.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)M571.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L391.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)F134.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)K113.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.504 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)I489.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)E406.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)P496.CB) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)V35.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)S341.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)Q354.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)P356.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)L391.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)N404.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L446.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)I489.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)I489.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.495 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)C22.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)I16.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)N80.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.495 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)I62.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.495 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.495 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.495 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.495 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)E521.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.496 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.495 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.495 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.495 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.495 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G455.CA, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.495 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.495 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)N221.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)I200.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)K353.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)S341.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V397.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)N88.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)Y90.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)K36.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)G126.CA) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)V191.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)L223.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)E257.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)N373.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)K310.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K304.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D466.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)Y519.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)Q554.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)E72.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)C22.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)R402.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)L593.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)L523.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)D494.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)N201.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)N88.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)G192.CA) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N221.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)F599.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V584.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)E257.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)K493.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N105.CB, (T0547)A114.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)I193.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)N80.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)N88.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I169.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)P176.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)V215.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K304.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A553.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)V21.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)C22.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S202.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)A431.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)K493.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E521.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)Y366.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)A374.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)A374.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)I140.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)I193.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)N221.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)N201.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)A114.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)V191.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)K493.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)K495.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)D501.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V522.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)K353.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)P356.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)V442.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.480 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)F447.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)L523.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)N80.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)L85.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)E346.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)L418.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)L420.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)I200.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G199.CA, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E338.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)Y377.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N289.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V397.CB, (T0547)E406.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I550.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S449.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M525.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)Q554.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I551.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N575.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)N24.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)V35.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)R70.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)G143.CA) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)E162.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)Y90.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)G192.CA) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)K175.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)V191.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)I167.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)I200.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)K245.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E314.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)Y366.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)D466.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G455.CA, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)L375.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)L391.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q458.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)V522.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q458.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E278.CB, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)A307.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)P356.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)L375.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)D558.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)F134.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.473 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)G192.CA) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)H231.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S202.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)L456.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L446.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E488.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S492.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)D501.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)K353.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)Y366.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R577.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)H187.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)N284.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G199.CA, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)G252.CA) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)E470.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)K493.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K495.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q458.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)Q554.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I551.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I551.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)F599.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)F73.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I15.CB, (T0547)N24.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)M120.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)L117.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F174.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)I200.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)K245.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K17.CB, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)K113.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)F134.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)L223.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)L420.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)L420.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)Q309.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)L378.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L391.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)K495.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V584.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)L223.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)M120.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)N88.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)I59.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)E257.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)W454.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)R577.CB) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)K310.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)P356.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)K370.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.462 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L391.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A405.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)A195.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)K283.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S280.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)S341.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.461 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)A431.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I169.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N11.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E12.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)K113.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G101.CA, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)F447.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)A553.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)P496.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I573.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.460 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I578.CB, (T0547)Q588.CB) [> -999.000 = 6.500 < 8.500] w=0.459 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A263.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)R259.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)F282.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)T473.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D469.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)Y363.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)S372.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)E406.CB) [> -999.000 = 6.500 < 8.500] w=0.458 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N124.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)V215.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I167.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)K36.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L378.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L394.CB, (T0547)N404.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V522.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.457 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L560.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.456 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)E471.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D469.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H532.CB, (T0547)E548.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T291.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I306.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F340.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)K367.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)E595.CB) [> -999.000 = 6.500 < 8.500] w=0.455 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)Q89.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D136.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.454 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)P176.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)G192.CA) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I570.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L593.CB, (T0547)N603.CB) [> -999.000 = 6.500 < 8.500] w=0.453 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)L85.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)G126.CA) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)G78.CA) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)H187.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)V215.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)H187.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I169.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)V191.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N201.CB, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)E250.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A214.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L375.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)K415.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)L420.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)L420.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)E285.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)S490.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)Q554.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I551.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.451 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)F444.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E457.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E12.CB, (T0547)N24.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)I31.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)G77.CA) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N105.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)S372.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)I417.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)K283.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E314.CB, (T0547)P335.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)K415.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)N425.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)T473.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)K495.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y491.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)Y519.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.449 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)I193.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)N24.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)L38.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)V94.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I15.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)L85.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N105.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)K113.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)K135.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)A121.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E125.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)Y255.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E148.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K245.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)L420.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)Q458.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.448 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)Q520.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I540.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.447 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)G92.CA) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)Y75.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)D316.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)N201.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)L399.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.446 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V504.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L557.CB, (T0547)A569.CB) [> -999.000 = 6.500 < 8.500] w=0.445 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y565.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L593.CB, (T0547)Y605.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)F282.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.444 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I167.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L275.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L217.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G101.CA, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E125.CB, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)E361.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L313.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P335.CB, (T0547)E346.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)L394.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)V442.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P496.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)G524.CA) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)K423.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)F444.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)Q458.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P472.CB, (T0547)S485.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)Y363.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)P496.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)D494.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.443 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)N443.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y440.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G455.CA, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G455.CA, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.442 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L446.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N123.CB, (T0547)K135.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.441 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)K177.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)F227.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.440 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)P356.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L411.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)Y377.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)L399.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A405.CB, (T0547)Q424.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)W454.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N152.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P176.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I200.CB, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.439 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L456.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A374.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D393.CB, (T0547)S403.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)K310.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T256.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)V442.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)L430.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)L468.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S485.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)M525.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D501.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y509.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)E376.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)Q554.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R474.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A553.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)L583.CB) [> -999.000 = 6.500 < 8.500] w=0.437 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)I350.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)L378.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L365.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H379.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q281.CB, (T0547)T291.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A263.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E457.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P461.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)K495.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)N508.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I551.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)E542.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D562.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G143.CA, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.436 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N11.CB, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K36.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G77.CA, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)A114.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L117.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)E278.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)N289.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.435 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G199.CA, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)L38.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)M229.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q58.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I169.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)R288.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)W454.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)R474.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L446.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.434 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K493.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.433 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)A307.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)L351.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D316.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)L365.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E346.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)L378.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T409.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V522.CB, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.432 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K177.CB, (T0547)K264.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L217.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)W454.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)N459.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)P461.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P472.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S485.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)F73.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)M120.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)C22.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)G126.CA) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I15.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A195.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V215.CB, (T0547)G252.CA) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N201.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)G252.CA) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)P243.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)L258.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)A81.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F51.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)N105.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)N88.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)A114.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K95.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)A110.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)R173.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A170.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V191.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)A374.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)R402.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)F447.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)L456.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)K543.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)L523.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M525.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I538.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)L557.CB) [> -999.000 = 6.500 < 8.500] w=0.430 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L430.CB, (T0547)Y440.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)F447.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P472.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)K495.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)F599.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y565.CB, (T0547)R577.CB) [> -999.000 = 6.500 < 8.500] w=0.429 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L339.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A263.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G272.CA, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)K370.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L378.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L408.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L389.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)L378.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I369.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.428 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)C483.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I478.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)L399.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)L411.CB) [> -999.000 = 6.500 < 8.500] w=0.427 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H187.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L217.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K219.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N221.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)S280.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)L411.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)I129.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N67.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F14.CB, (T0547)R39.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I31.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N124.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y43.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)R39.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I34.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)R70.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A81.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)A114.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)N132.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G111.CA, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G150.CA, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)I417.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N265.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I302.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)E346.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)L411.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)K415.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)F447.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)L511.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M525.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)D562.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I193.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G199.CA, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.425 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)G143.CA) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)S208.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N221.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)Q354.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I432.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)E470.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q458.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P91.CB, (T0547)E109.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)L160.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)P176.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)G198.CA) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T228.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)E278.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y344.CB, (T0547)Q354.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L391.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L411.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)K415.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L394.CB, (T0547)E406.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)L378.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A416.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)A431.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)W454.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)F447.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D466.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)L523.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y565.CB, (T0547)I578.CB) [> -999.000 = 6.500 < 8.500] w=0.424 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N459.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T473.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)K493.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F510.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.423 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y519.CB, (T0547)A536.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)V584.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I551.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)G77.CA) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)Y90.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)F73.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)N96.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)S112.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)V131.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y106.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)T156.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I417.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P426.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)R467.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)D469.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E457.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)E521.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y545.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)L606.CB) [> -999.000 = 6.500 < 8.500] w=0.422 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V300.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.421 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)A416.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)S403.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)K348.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L332.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A405.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H410.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)F510.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E115.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N11.CB, (T0547)I23.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)N24.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)L108.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)N124.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)R70.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y63.CB, (T0547)F93.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)L116.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)V35.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F79.CB, (T0547)L97.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G190.CA, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W194.CB, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L218.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H231.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I241.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N221.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q424.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M450.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.420 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E406.CB, (T0547)Q424.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)I417.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L244.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L248.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)A296.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)F282.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)A307.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I306.CB, (T0547)L332.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P315.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)W454.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)T473.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F514.CB, (T0547)L563.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N105.CB, (T0547)P128.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A146.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I157.CB, (T0547)W194.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S197.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N201.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L234.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L85.CB, (T0547)K113.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)K135.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I15.CB, (T0547)I32.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)L49.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)I140.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)L271.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A121.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)Y104.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T130.CB, (T0547)T228.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)S202.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)T207.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y25.CB, (T0547)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)L266.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)I180.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y83.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)L206.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N123.CB, (T0547)F134.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F227.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L258.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)Q342.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N347.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)E361.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F282.CB, (T0547)Y295.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)S341.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)E338.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H151.CB, (T0547)N265.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I169.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I153.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K203.CB, (T0547)L234.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)L223.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)G272.CA) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L38.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)F73.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G262.CA, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)N284.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)S341.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N355.CB, (T0547)A374.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)L385.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L389.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G395.CA, (T0547)K415.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)V436.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N425.CB, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)S485.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S492.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D494.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)G549.CA) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)Y545.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.418 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D480.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.417 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y295.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N270.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V277.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E320.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)H379.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K367.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)H384.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)K415.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I388.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)L419.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K414.CB, (T0547)A427.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)P461.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)N459.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F453.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)L499.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I489.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.416 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)I556.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G524.CA, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.414 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N528.CB, (T0547)E552.CB) [> -999.000 = 6.500 < 8.500] w=0.415 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)L391.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E314.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)E346.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)H410.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)D480.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A330.CB, (T0547)I369.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L337.CB, (T0547)Y366.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)A431.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)F460.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)A431.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)A518.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)K526.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)T559.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D452.CB, (T0547)P461.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)L574.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)M525.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E535.CB, (T0547)S555.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A536.CB, (T0547)Y565.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V584.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)N347.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)S368.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L358.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y396.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I16.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q56.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F66.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)N124.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L48.CB, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)F66.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A69.CB, (T0547)Y83.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R70.CB, (T0547)P84.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)K113.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y90.CB, (T0547)E158.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G126.CA, (T0547)N179.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)F174.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)N124.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S112.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V131.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)L155.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S188.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)E210.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K196.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)I241.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G205.CA, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G235.CA, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.413 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L160.CB, (T0547)V184.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)V215.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)G262.CA) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)L218.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D7.CB, (T0547)A30.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)M149.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)Q58.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A119.CB, (T0547)P178.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)G143.CA) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)L224.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I129.CB, (T0547)A147.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G19.CA, (T0547)K44.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V21.CB, (T0547)L38.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L49.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)K86.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N65.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V82.CB, (T0547)A127.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)A330.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)E115.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L97.CB, (T0547)M120.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)M120.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)L182.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)I142.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)R183.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N123.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)L163.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L163.CB, (T0547)L217.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L186.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)K286.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)L223.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N179.CB, (T0547)N221.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V184.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)T239.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)A247.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)I269.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T154.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)G150.CA) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I166.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F174.CB, (T0547)R185.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G198.CA, (T0547)L211.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)A268.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)Y279.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)E250.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G252.CA, (T0547)D298.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A263.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L275.CB, (T0547)L411.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L292.CB, (T0547)R323.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)H329.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)N328.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N297.CB, (T0547)I306.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A345.CB, (T0547)I359.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P371.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L394.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)S287.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)F340.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)K352.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)K370.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L391.CB, (T0547)N404.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)I333.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)N355.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G274.CA, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V299.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N289.CB, (T0547)E320.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)F324.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L313.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F318.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A296.CB, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I306.CB, (T0547)V325.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A327.CB, (T0547)T413.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)Y344.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)E346.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)L365.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K352.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L362.CB, (T0547)L391.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)N373.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I407.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L499.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L511.CB, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G517.CA, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)L560.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L529.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T559.CB, (T0547)R577.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L563.CB, (T0547)L593.CB) [> -999.000 = 6.500 < 8.500] w=0.412 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)Y605.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L441.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)L456.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)L529.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I412.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L418.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)F453.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S449.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)D466.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)K495.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E470.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P472.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F530.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V502.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G512.CA, (T0547)I592.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L515.CB, (T0547)M525.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T531.CB, (T0547)E542.CB) [> -999.000 = 6.500 < 8.500] w=0.410 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q520.CB, (T0547)I540.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V547.CB, (T0547)L557.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I556.CB, (T0547)Y605.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I567.CB, (T0547)K589.CB) [> -999.000 = 6.500 < 8.500] w=0.409 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)K36.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D40.CB, (T0547)Y122.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G10.CA, (T0547)G19.CA) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y25.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)L48.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A30.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)A334.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P52.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V87.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F93.CB, (T0547)L118.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L108.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A110.CB, (T0547)A119.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K113.CB, (T0547)T130.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L118.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)I140.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)V35.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)R39.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y4.CB, (T0547)A69.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I6.CB, (T0547)L38.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)N161.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F144.CB, (T0547)A251.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A147.CB, (T0547)A263.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T156.CB, (T0547)I317.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G159.CA, (T0547)H233.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)S236.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G192.CA, (T0547)G273.CA) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S208.CB, (T0547)P243.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)R259.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S236.CB, (T0547)F530.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q237.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L375.CB, (T0547)L391.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H384.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)S403.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F392.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L271.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A247.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S321.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G322.CA, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F324.CB, (T0547)Q354.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N328.CB, (T0547)P356.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)I388.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)P533.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V331.CB, (T0547)S341.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L266.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K267.CB, (T0547)E278.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A268.CB, (T0547)L339.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G273.CA, (T0547)G517.CA) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A276.CB, (T0547)E294.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N289.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A307.CB, (T0547)I319.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I333.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y377.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)L394.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L385.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L399.CB, (T0547)I432.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T413.CB, (T0547)F447.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F460.CB, (T0547)T482.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I462.CB, (T0547)S492.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M463.CB, (T0547)I489.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P464.CB, (T0547)G512.CA) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)Y509.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C483.CB, (T0547)V504.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.408 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R183.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L420.CB, (T0547)L430.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V442.CB, (T0547)P464.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G421.CA, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N443.CB, (T0547)I462.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F447.CB, (T0547)I481.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)F498.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L468.CB, (T0547)S485.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A476.CB, (T0547)V547.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G487.CA, (T0547)N528.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H500.CB, (T0547)G524.CA) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F513.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V516.CB, (T0547)L596.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A518.CB, (T0547)T534.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H527.CB, (T0547)N541.CB) [> -999.000 = 6.500 < 8.500] w=0.407 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q448.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P451.CB, (T0547)S475.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)V502.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I481.CB, (T0547)V522.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T482.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L497.CB, (T0547)H527.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F498.CB, (T0547)F514.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I551.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K526.CB, (T0547)E535.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P533.CB, (T0547)I570.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I540.CB, (T0547)I550.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M571.CB, (T0547)L583.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L186.CB, (T0547)I238.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A189.CB, (T0547)G199.CA) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S202.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L224.CB, (T0547)Q237.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)Y290.CB) [> -999.000 = 6.500 < 8.500] w=0.406 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I8.CB, (T0547)V21.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L47.CB, (T0547)G107.CA) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N80.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)G111.CA) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V94.CB, (T0547)N124.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L116.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M120.CB, (T0547)M261.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A127.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F134.CB, (T0547)N270.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W9.CB, (T0547)F51.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N13.CB, (T0547)V35.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K20.CB, (T0547)I34.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I23.CB, (T0547)G45.CA) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N24.CB, (T0547)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I302.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I180.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)K203.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L182.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R185.CB, (T0547)G322.CA) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L206.CB, (T0547)G235.CA) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L211.CB, (T0547)F513.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)L337.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I238.CB, (T0547)A327.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T239.CB, (T0547)I254.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)C22.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I32.CB, (T0547)R50.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K44.CB, (T0547)H151.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P46.CB, (T0547)G126.CA) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R50.CB, (T0547)G181.CA) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G5.CA, (T0547)Y25.CB) [> -999.000 = 6.500 < 8.500] w=0.401 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V35.CB, (T0547)N65.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R39.CB, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I55.CB, (T0547)F79.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I59.CB, (T0547)V82.CB) [> -999.000 = 6.500 < 8.500] w=0.401 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I62.CB, (T0547)F144.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G78.CA, (T0547)V87.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P84.CB, (T0547)T154.CB) [> -999.000 = 6.500 < 8.500] w=0.401 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K86.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N88.CB, (T0547)S321.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q89.CB, (T0547)G133.CA) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K95.CB, (T0547)Y106.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V98.CB, (T0547)I153.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G107.CA, (T0547)N152.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A114.CB, (T0547)I157.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)I145.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A121.CB, (T0547)A146.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y122.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I212.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)K245.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F232.CB, (T0547)V331.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N123.CB, (T0547)L139.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K135.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L139.CB, (T0547)I166.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I145.CB, (T0547)L244.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I140.CB, (T0547)A170.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I142.CB, (T0547)I230.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L155.CB, (T0547)A214.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E158.CB, (T0547)I169.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I167.CB, (T0547)Q226.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)F204.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P178.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)F232.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G181.CA, (T0547)F318.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H233.CB, (T0547)L248.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G45.CA, (T0547)L100.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y75.CB, (T0547)P91.CB) [> -999.000 = 6.500 < 8.500] w=0.401 to nn1000 # Constraint # added constraint: bonus constraint((T0547)E109.CB, (T0547)G159.CA) [> -999.000 = 6.500 < 8.500] w=0.401 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)E314.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P128.CB, (T0547)P315.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N132.CB, (T0547)G205.CA) [> -999.000 = 6.500 < 8.500] w=0.401 to nn1000 # Constraint # added constraint: bonus constraint((T0547)G133.CA, (T0547)K196.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F174.CB, (T0547)S197.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F204.CB, (T0547)A276.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)L303.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)M229.CB, (T0547)D312.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q226.CB, (T0547)K267.CB) [> -999.000 = 6.500 < 8.500] w=0.401 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I230.CB, (T0547)V277.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K415.CB, (T0547)L429.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L419.CB, (T0547)L441.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D422.CB, (T0547)A431.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K423.CB, (T0547)F444.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L429.CB, (T0547)V442.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D486.CB, (T0547)H532.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L574.CB, (T0547)F599.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)L408.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y255.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R259.CB, (T0547)L313.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I317.CB, (T0547)I538.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A263.CB, (T0547)G274.CA) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)T409.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)L358.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A334.CB, (T0547)L362.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V336.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y279.CB, (T0547)V299.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y290.CB, (T0547)A326.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I319.CB, (T0547)L515.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K348.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I350.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)P356.CB, (T0547)I382.CB) [> -999.000 = 6.500 < 8.500] w=0.405 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D360.CB, (T0547)L375.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)F392.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A251.CB, (T0547)I412.CB) [> -999.000 = 6.500 < 8.500] w=0.401 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I254.CB, (T0547)L292.CB) [> -999.000 = 6.500 < 8.500] w=0.401 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I269.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.401 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L303.CB, (T0547)L349.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)L391.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)V325.CB, (T0547)I478.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R323.CB, (T0547)W479.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)A345.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)I407.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A326.CB, (T0547)M463.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)S341.CB) [> -999.000 = 6.500 < 8.500] w=0.401 to nn1000 # Constraint # added constraint: bonus constraint((T0547)H329.CB, (T0547)G395.CA) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)K367.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L349.CB, (T0547)L394.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L351.CB, (T0547)P371.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y366.CB, (T0547)Y396.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)A476.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)S477.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)D484.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L465.CB, (T0547)Y519.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)I537.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W454.CB, (T0547)L497.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q433.CB, (T0547)P451.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Q437.CB, (T0547)L446.CB) [> -999.000 = 6.500 < 8.500] w=0.401 to nn1000 # Constraint # added constraint: bonus constraint((T0547)F444.CB, (T0547)L465.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)N459.CB, (T0547)P472.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S477.CB, (T0547)S539.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D484.CB, (T0547)T531.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L523.CB, (T0547)I573.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)T534.CB, (T0547)L557.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)A553.CB, (T0547)I567.CB) [> -999.000 = 6.500 < 8.500] w=0.404 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I359.CB, (T0547)S372.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)Y363.CB, (T0547)L385.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L411.CB, (T0547)M450.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)L313.CB, (T0547)V336.CB) [> -999.000 = 6.500 < 8.500] w=0.401 to nn1000 # Constraint # added constraint: bonus constraint((T0547)I382.CB, (T0547)A405.CB) [> -999.000 = 6.500 < 8.500] w=0.401 to nn1000 # Constraint # added constraint: bonus constraint((T0547)R467.CB, (T0547)Y491.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)D469.CB, (T0547)S485.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)K589.CB, (T0547)L600.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to nn1000 # Constraint # added constraint: bonus constraint((T0547)S475.CB, (T0547)H500.CB) [> -999.000 = 6.500 < 8.500] w=0.402 to nn1000 # Constraint # added constraint: bonus constraint((T0547)W479.CB, (T0547)V516.CB) [> -999.000 = 6.500 < 8.500] w=0.401 to nn1000 # command:# reading script from file MQA_init.costfcn # SetCost created cost = # ( 5.395 * align_constraints + 0.433 * phobic_fit + 5.237 * pred_nb11_back(9.650) + 3.487 * pred_bys_back + 3.032 * pred_alpha_back + 11.769 * wet6.5(6.500, /log(length)) + 2.146 * pred_n_notor_back + 59.013 * noncontact_bonus + 1.605 * break + 2.341 * pred_o_sep_back + 0.619 * sidechain_clashes + 2.571 * bystroff + 0.143 * contact(8.000) + 0.939 * alpha_prev + 0.741 * pred_n_sep_back + 0.319 * ehl2_constraints + 0.198 * deep_knot + 0.010 * cb14(14.000) ) # command:CPU_time= 60.869 sec, elapsed time= 75.206 sec. # command:# Making generic fragment library # fragment library contains # type length num_fragments num_indexes_used # n-terminus 1 2807 20 (100.000%) # n-terminus 2 2756 353 (88.250%) # middle 1 691065 20 (100.000%) # middle 2 681965 400 (100.000%) # middle 3 673190 7997 (99.963%) # middle 4 664626 131322 (82.076%) # c-terminus 1 2743 20 (100.000%) # c-terminus 2 2698 379 (94.750%) # ss-bonds 1300 # command:CPU_time= 85.201 sec, elapsed time= 107.279 sec. # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:Warning: Couldn't open file Template.atoms or Template.atoms.gz for input Trying Template.atoms Error: Couldn't open file Template.atoms or Template.atoms.gz for input # command:# reading script from file T0547.t04.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2o0tA/T0547-2o0tA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2o0tA expands to /projects/compbio/data/pdb/2o0t.pdb.gz 2o0tA:# T0547 read from 2o0tA/T0547-2o0tA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2o0tA read from 2o0tA/T0547-2o0tA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2o0tA to template set # found chain 2o0tA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 T0547 19 :GKVC 2o0tA 14 :RNTT # choosing archetypes in rotamer library T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSV T0547 140 :INIGF 2o0tA 121 :SELTA T0547 146 :AAEMGHNI 2o0tA 126 :AVKAGVGH T0547 155 :LTIEGLNELEAIIDIAKE 2o0tA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 2o0tA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 2o0tA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGGLAVEY 2o0tA 247 :TAQIATVDLGGGLGISY T0547 282 :FKNEKSR 2o0tA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 2o0tA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 2o0tA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPS 2o0tA 347 :LYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2o0tA 388 :PDDIRPGDLVAVAATGAYCYSLSSRYNMVG T0547 429 :L 2o0tA 419 :P T0547 536 :AIISINEKGYEVEG 2o0tA 420 :AVVAVHAGNARLVL T0547 582 :KLVNDKQKK 2o0tA 434 :RRETVDDLL Number of specific fragments extracted= 24 number of extra gaps= 3 total=24 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1780113169.pdb -s /var/tmp/to_scwrl_1780113169.seq -o /var/tmp/from_scwrl_1780113169.pdb > /var/tmp/scwrl_1780113169.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1780113169.pdb Number of alignments=1 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2qghA/T0547-2qghA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2qghA expands to /projects/compbio/data/pdb/2qgh.pdb.gz 2qghA:# T0547 read from 2qghA/T0547-2qghA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2qghA read from 2qghA/T0547-2qghA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2qghA to template set # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFK T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 36 :GRKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSA T0547 140 :INIGF 2qghA 95 :FEIEQ T0547 146 :AAEMGHNI 2qghA 100 :ALKLNILF T0547 155 :LTIEGLNELEAIIDIAKE 2qghA 108 :LNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLH 2qghA 126 :LGIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLL 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 178 :EPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYS 2qghA 216 :DLRFFDVGGGIGVSYE T0547 284 :NEKSR 2qghA 232 :NEETI T0547 291 :TLREYANDVVFIL 2qghA 237 :KLYDYAQGILNAL T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 250 :QGLDLTIICEPGRSIVAESGELITQVLYEK T0547 346 :ENKLILKKQNPKLIDE 2qghA 284 :KRFVIVDAGMNDFLRP T0547 362 :LYDLYKSIKPSNA 2qghA 301 :LYHAKHAIRVITP T0547 379 :HDSIDHLESILTLFDLGYVD 2qghA 319 :ISPCDVVGPVCESSDTFLKD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYNSRP T0547 429 :LLAIQD 2qghA 373 :LELALE T0547 438 :ERYLVNFSLFQSMPDFWGL 2qghA 382 :IRVIRKREALEDLWRLEEE Number of specific fragments extracted= 19 number of extra gaps= 0 total=43 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_894431535.pdb -s /var/tmp/to_scwrl_894431535.seq -o /var/tmp/from_scwrl_894431535.pdb > /var/tmp/scwrl_894431535.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_894431535.pdb Number of alignments=2 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1twiA/T0547-1twiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1twiA expands to /projects/compbio/data/pdb/1twi.pdb.gz 1twiA:# T0547 read from 1twiA/T0547-1twiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1twiA read from 1twiA/T0547-1twiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1twiA to template set # found chain 1twiA in template set T0547 12 :ENFIIKN 1twiA 19 :DTVEIKD T0547 27 :KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 26 :GRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLG 1twiA 76 :FIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1twiA 132 :EEIIM T0547 146 :AAEMGHNI 1twiA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1twiA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1twiA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1twiA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1twiA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1twiA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1twiA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNI 1twiA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1twiA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1twiA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1twiA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1twiA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :L 1twiA 415 :P T0547 475 :S 1twiA 416 :R T0547 537 :IISINEKGYEVEG 1twiA 417 :MVLTSKKGVFLIR T0547 582 :KLVNDKQK 1twiA 430 :ERETYADL Number of specific fragments extracted= 23 number of extra gaps= 0 total=66 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1661603594.pdb -s /var/tmp/to_scwrl_1661603594.seq -o /var/tmp/from_scwrl_1661603594.pdb > /var/tmp/scwrl_1661603594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1661603594.pdb Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tufA/T0547-1tufA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1tufA expands to /projects/compbio/data/pdb/1tuf.pdb.gz 1tufA:Bad short name: N1 for alphabet: pdb_atoms Bad short name: C2 for alphabet: pdb_atoms Bad short name: C2' for alphabet: pdb_atoms Bad short name: C3 for alphabet: pdb_atoms Bad short name: O3 for alphabet: pdb_atoms Bad short name: C4 for alphabet: pdb_atoms Bad short name: C4' for alphabet: pdb_atoms Bad short name: C5 for alphabet: pdb_atoms Bad short name: C6 for alphabet: pdb_atoms Bad short name: C5' for alphabet: pdb_atoms Bad short name: OP4 for alphabet: pdb_atoms Bad short name: P for alphabet: pdb_atoms Bad short name: OP1 for alphabet: pdb_atoms Bad short name: OP2 for alphabet: pdb_atoms Bad short name: OP3 for alphabet: pdb_atoms # T0547 read from 1tufA/T0547-1tufA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tufA read from 1tufA/T0547-1tufA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1tufA to template set # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 23 :INYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1tufA 22 :EIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYP 1tufA 76 :FIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1tufA 132 :EEIIM T0547 146 :AAEMGHNI 1tufA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1tufA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1tufA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1tufA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1tufA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1tufA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1tufA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNI 1tufA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1tufA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1tufA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1tufA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1tufA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :L 1tufA 415 :P T0547 536 :AIISINEKGYEVEG 1tufA 416 :RMVLTSKKGVFLIR T0547 582 :KLVNDKQK 1tufA 430 :ERETYADL Number of specific fragments extracted= 22 number of extra gaps= 0 total=88 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_61353774.pdb -s /var/tmp/to_scwrl_61353774.seq -o /var/tmp/from_scwrl_61353774.pdb > /var/tmp/scwrl_61353774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_61353774.pdb Number of alignments=4 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2j66A/T0547-2j66A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2j66A/T0547-2j66A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2j66A read from 2j66A/T0547-2j66A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)I359 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)K370 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKR T0547 140 :INIGF 2j66A 98 :SELEI T0547 146 :AAEMGHNI 2j66A 103 :AVQSGIYC T0547 155 :LTIEGLNELEAIIDIAKE 2j66A 111 :IIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLL 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFT T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 180 :KFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 288 :RNYTLREYANDVVFILKNIAEQ 2j66A 238 :KALDIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKG T0547 346 :ENKLILKKQNPK 2j66A 294 :EVFVIVDGGMHH T0547 358 :L 2j66A 308 :A T0547 371 :PS 2j66A 322 :ME T0547 380 :DSIDHLESILTLFDLGYVD 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPAD 2j66A 383 :HFLGHP T0547 429 :L 2j66A 390 :P T0547 536 :AIISINEKGYEVEG 2j66A 391 :IEILKRNGSYELIR T0547 582 :KLVNDKQKK 2j66A 405 :RKGTADDIV Number of specific fragments extracted= 20 number of extra gaps= 0 total=108 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1950955983.pdb -s /var/tmp/to_scwrl_1950955983.seq -o /var/tmp/from_scwrl_1950955983.pdb > /var/tmp/scwrl_1950955983.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1950955983.pdb Number of alignments=5 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knwA/T0547-1knwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1knwA expands to /projects/compbio/data/pdb/1knw.pdb.gz 1knwA:Skipped atom 1707, because occupancy 0.5 <= existing 0.500 in 1knwA Skipped atom 1709, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 1711, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 1713, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 1999, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 2003, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 2005, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 2007, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 2009, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 2011, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 2013, because occupancy 0.500 <= existing 0.500 in 1knwA # T0547 read from 1knwA/T0547-1knwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knwA read from 1knwA/T0547-1knwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1knwA to template set # found chain 1knwA in template set T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIEN 1knwA 6 :FSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAA T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLG 1knwA 43 :LKQFDVVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNE 1knwA 70 :VKVDSVSLGEIERALAAGYN T0547 126 :GAPITVNGFKDRE 1knwA 94 :PDDIVFTADVIDQ T0547 140 :INIGF 1knwA 107 :ATLER T0547 146 :AAEMGHN 1knwA 112 :VSELQIP T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLH 1knwA 137 :HRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKL 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHL T0547 226 :QFTMIHFHLGSQ 1knwA 184 :QLVGIHMHIGSG T0547 239 :TEIHPLKKALNEAGNIYTEL 1knwA 196 :VDYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEY 1knwA 218 :DLQAISAGGGLSVPY T0547 282 :FKNEKSR 1knwA 233 :QQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKDL 1knwA 240 :DTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGS T0547 346 :ENKLILKKQNPKLIDE 1knwA 293 :RHFVLVDAGFNDLMRP T0547 362 :LYDLYKSIK 1knwA 310 :MYGSYHHIS T0547 371 :PSNALEYLHDSIDHLESILTLFDLGYVD 1knwA 324 :GRSLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRP T0547 429 :LL 1knwA 392 :LP T0547 537 :IISINEKGYEVEG 1knwA 394 :EVLFDNGQARLIR T0547 582 :KLVNDKQKK 1knwA 407 :RRQTIEELL Number of specific fragments extracted= 23 number of extra gaps= 0 total=131 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_639067586.pdb -s /var/tmp/to_scwrl_639067586.seq -o /var/tmp/from_scwrl_639067586.pdb > /var/tmp/scwrl_639067586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_639067586.pdb Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2p3eA/T0547-2p3eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2p3eA expands to /projects/compbio/data/pdb/2p3e.pdb.gz 2p3eA:# T0547 read from 2p3eA/T0547-2p3eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2p3eA read from 2p3eA/T0547-2p3eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2p3eA to template set # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 23 :INYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2p3eA 12 :EYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTE T0547 140 :INIGF 2p3eA 114 :KELTD T0547 146 :AAEMGHNI 2p3eA 119 :AVDSEILM T0547 155 :LTIEGLNELEAIIDIAKE 2p3eA 127 :FNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLL 2p3eA 175 :KFGVDIREAQKEYEYASKLENL T0547 226 :QFTMI 2p3eA 197 :EIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEY 2p3eA 235 :DIKYLDIGGGLGIKY T0547 282 :FKNEKSR 2p3eA 250 :KPEDKEP T0547 291 :TLREYANDV 2p3eA 257 :APQDLADLL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEY 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGS T0547 346 :ENKLILKKQNPKLIDE 2p3eA 304 :KHFIIVDAGMNDLIRP T0547 362 :LYDLYKSIKPSNAL 2p3eA 321 :IYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVD 2p3eA 340 :VADIVGPICETGDFLALD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYNMRP T0547 429 :L 2p3eA 391 :A T0547 536 :AIISINEKGYEVEG 2p3eA 392 :AEVLVENGSVKLIR T0547 582 :KLVNDKQK 2p3eA 406 :KRENYDYI Number of specific fragments extracted= 21 number of extra gaps= 1 total=152 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_2071879811.pdb -s /var/tmp/to_scwrl_2071879811.seq -o /var/tmp/from_scwrl_2071879811.pdb > /var/tmp/scwrl_2071879811.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2071879811.pdb Number of alignments=7 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2pljA/T0547-2pljA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2pljA expands to /projects/compbio/data/pdb/2plj.pdb.gz 2pljA:Skipped atom 865, because occupancy 0.500 <= existing 0.500 in 2pljA Skipped atom 867, because occupancy 0.500 <= existing 0.500 in 2pljA Skipped atom 869, because occupancy 0.500 <= existing 0.500 in 2pljA Skipped atom 871, because occupancy 0.500 <= existing 0.500 in 2pljA Skipped atom 1825, because occupancy 0.500 <= existing 0.500 in 2pljA Skipped atom 1827, because occupancy 0.500 <= existing 0.500 in 2pljA Skipped atom 1829, because occupancy 0.500 <= existing 0.500 in 2pljA Skipped atom 2313, because occupancy 0.500 <= existing 0.500 in 2pljA Skipped atom 2315, because occupancy 0.500 <= existing 0.500 in 2pljA Skipped atom 2317, because occupancy 0.500 <= existing 0.500 in 2pljA Skipped atom 2519, because occupancy 0.500 <= existing 0.500 in 2pljA # T0547 read from 2pljA/T0547-2pljA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2pljA read from 2pljA/T0547-2pljA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2pljA to template set # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2pljA 26 :IEASVEQFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRD T0547 140 :INIGF 2pljA 115 :ADIRD T0547 146 :AAEMGHNI 2pljA 120 :ALAYGCNV T0547 155 :LTIEGLNELE 2pljA 128 :FVVDNLNELE T0547 169 :IAKE 2pljA 138 :KFKA T0547 174 :FKPKPNIGLRVR 2pljA 142 :YRDDVELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENKL 2pljA 165 :KKFGCSPEQALVIIETAKEWNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2pljA 187 :RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNY T0547 283 :KNE 2pljA 241 :TQQ T0547 287 :SR 2pljA 244 :VM T0547 291 :TLREYANDVVFIL 2pljA 246 :PIDQFCAPINEAL T0547 308 :E 2pljA 259 :S T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2pljA 260 :LLPETVHVLAEPGRFICAPAVTSVASVMGQAEREG T0547 346 :ENKLILKKQNPKLIDELY 2pljA 295 :QIWYYLDDGIYGSFSGLM T0547 366 :YKSIKPS 2pljA 313 :FDDARYP T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 2pljA 323 :IKQGGELIPSVLSGPTCDSVDVIAEN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFK Number of specific fragments extracted= 19 number of extra gaps= 0 total=171 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_736487962.pdb -s /var/tmp/to_scwrl_736487962.seq -o /var/tmp/from_scwrl_736487962.pdb > /var/tmp/scwrl_736487962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_736487962.pdb Number of alignments=8 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2yxxA/T0547-2yxxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2yxxA expands to /projects/compbio/data/pdb/2yxx.pdb.gz 2yxxA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0547 read from 2yxxA/T0547-2yxxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2yxxA read from 2yxxA/T0547-2yxxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2yxxA to template set # found chain 2yxxA in template set T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSR T0547 140 :INIGF 2yxxA 95 :DQMEH T0547 146 :AAEMGHNI 2yxxA 100 :FLREDVRI T0547 155 :LTIEGLNELEAIIDI 2yxxA 108 :VNVDSFEEMEIWREL T0547 174 :FKPKPNIGLRVRLH 2yxxA 123 :NPEGVEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLL 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERF T0547 221 :NKL 2yxxA 169 :RSM T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 172 :NIRGLHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEY 2yxxA 205 :GFEEINIGGGWGINY T0547 284 :NEKSR 2yxxA 220 :SGEEL T0547 291 :TLREYANDVV 2yxxA 225 :DLSSYREKVV T0547 308 :EQKK 2yxxA 235 :PDLK T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2yxxA 239 :RFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHN T0547 346 :ENKLILKKQNPKLIDE 2yxxA 271 :KAFVVVDGGMNVLIRP T0547 362 :LYDLYKSIKPSNALE 2yxxA 288 :LYSAYHRIFVLGKQG T0547 378 :LHDSIDHLESILTLFDLGYVD 2yxxA 303 :KEMRADVVGPLCESGDVIAYD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTT T0547 534 :TEAIISINEKGYEVEG 2yxxA 357 :PAEVLVRENGRISLIR T0547 582 :KLVNDKQK 2yxxA 373 :RRETEMDI Number of specific fragments extracted= 21 number of extra gaps= 0 total=192 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1963482321.pdb -s /var/tmp/to_scwrl_1963482321.seq -o /var/tmp/from_scwrl_1963482321.pdb > /var/tmp/scwrl_1963482321.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1963482321.pdb Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2nvaA/T0547-2nvaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2nvaA/T0547-2nvaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2nvaA read from 2nvaA/T0547-2nvaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2nvaA 7 :NILKAHPHQTKSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTI T0547 140 :INIGF 2nvaA 97 :DDLIF T0547 146 :AAEMGHNI 2nvaA 102 :AKDQGVDI T0547 155 :LTIEGLNELEAIIDIAKE 2nvaA 110 :ATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLH 2nvaA 128 :CKMILRIRCD T0547 188 :SAGVGI 2nvaA 139 :PNATVQ T0547 200 :INSKFGLTSTELIEAVNLLKENKL 2nvaA 145 :LGNKFGANEDEIRHLLEYAKQLDI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 169 :EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 287 :SR 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDG T0547 346 :ENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHD 2nvaA 277 :LYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDD T0547 381 :SIDHLESILTLFDLGYVD 2nvaA 316 :PSVLYGCTCDGVDVINHN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFG Number of specific fragments extracted= 17 number of extra gaps= 0 total=209 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1039552287.pdb -s /var/tmp/to_scwrl_1039552287.seq -o /var/tmp/from_scwrl_1039552287.pdb > /var/tmp/scwrl_1039552287.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1039552287.pdb Number of alignments=10 # Reading fragments from alignment file # Attempting to read fragment alignments from file 7odcA/T0547-7odcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 7odcA/T0547-7odcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 7odcA read from 7odcA/T0547-7odcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 13 :NFIIKNGKVCINYEK 7odcA 3 :SFTKDEFDCHILDEG T0547 34 :IVKELRDD 7odcA 18 :FTAKDILD T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQV T0547 140 :INIGF 7odcA 118 :SQIKY T0547 146 :AAEMGHNI 7odcA 123 :AASNGVQM T0547 155 :LTIEGLNELEAIIDIAKE 7odcA 131 :MTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENKL 7odcA 170 :FGATLKTSRLLLERAKELNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 190 :DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEY 7odcA 228 :SMHLLDIGGGFPGSE T0547 285 :EKSR 7odcA 243 :DTKL T0547 291 :TLREYANDVVFILKNIAEQK 7odcA 247 :KFEEITSVINPALDKYFPSD T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 267 :SGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDELYDLYKSIK 7odcA 312 :QTFMYYVNDGVYGSFNCILYDHAHVK T0547 371 :PSNALEYLHDSIDHLESILTLFDLGYVD 7odcA 342 :KRPKPDEKYYSSSIWGPTCDGLDRIVER T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADL 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQR Number of specific fragments extracted= 18 number of extra gaps= 0 total=227 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_298520901.pdb -s /var/tmp/to_scwrl_298520901.seq -o /var/tmp/from_scwrl_298520901.pdb > /var/tmp/scwrl_298520901.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_298520901.pdb Number of alignments=11 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2dy3A/T0547-2dy3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2dy3A expands to /projects/compbio/data/pdb/2dy3.pdb.gz 2dy3A:# T0547 read from 2dy3A/T0547-2dy3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2dy3A read from 2dy3A/T0547-2dy3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2dy3A to template set # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQY 2dy3A 25 :GPAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDR 2dy3A 75 :QEVLCWIWTPE T0547 140 :INIGF 2dy3A 86 :QDFRA T0547 146 :AAEMGH 2dy3A 91 :AIDRNI T0547 153 :I 2dy3A 97 :D T0547 155 :LTIEGLNELEAIID 2dy3A 98 :LAVISPAHAKALIE T0547 173 :RFKPKPNIGLRVRLH 2dy3A 112 :TDAEHIRVSIKIDSG T0547 188 :S 2dy3A 128 :H T0547 203 :KFGLTSTELIEAVNLLKENKLL 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHI T0547 226 :QFTMIHFHL 2dy3A 151 :EVTGMFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEY 2dy3A 190 :ECPVNHVCNSPAFLT T0547 282 :FKNEKSR 2dy3A 205 :RSDLHME T0547 318 :FIESGRFVAA 2dy3A 212 :MVRPGLAFYG T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKKQNPKLIDE 2dy3A 266 :GFVAVVPAGYADGMPR T0547 364 :DLYKSIK 2dy3A 282 :HAQGKFS T0547 378 :LHDSIDHLESILTLFDLGYVD 2dy3A 292 :DGLDYPQVGRVCMDQFVISLG T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 2dy3A 315 :PHGVEAGAKAVIFGENGHDATDFAERLDTINYEVVC Number of specific fragments extracted= 22 number of extra gaps= 0 total=249 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1554989023.pdb -s /var/tmp/to_scwrl_1554989023.seq -o /var/tmp/from_scwrl_1554989023.pdb > /var/tmp/scwrl_1554989023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1554989023.pdb Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rcqA/T0547-1rcqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1rcqA/T0547-1rcqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1rcqA read from 1rcqA/T0547-1rcqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1rcqA 2 :RPARALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKVNQ 1rcqA 27 :RALAVIKADA T0547 90 :YPGFVKNLVKLG 1rcqA 41 :AVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDREL 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEASE T0547 142 :IGF 1rcqA 87 :LEL T0547 146 :AAEMG 1rcqA 90 :IVAHD T0547 153 :ITLTIEGLNELEAI 1rcqA 95 :FWCVVHCAWQLEAI T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :RLH 1rcqA 124 :DSG T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LL 1rcqA 149 :KV T0547 226 :QFTMIHFHLG 1rcqA 151 :AKIVMMSHFS T0547 236 :SQITEIHPLKKALNEAGNIY 1rcqA 162 :ADELDCPRTEEQLAAFSAAS T0547 261 :MGA 1rcqA 182 :QGL T0547 265 :NLK 1rcqA 185 :EGE T0547 269 :INLGGGLAVEY 1rcqA 188 :ISLRNSPAVLG T0547 282 :FKNEK 1rcqA 199 :WPKVP T0547 315 :PDI 1rcqA 204 :SDW T0547 319 :IESGRFVAA 1rcqA 207 :VRPGILLYG T0547 328 :NHAVLIAPVLELFSQ 1rcqA 231 :PVMTLESKVISVRDL T0547 343 :EY 1rcqA 261 :RR T0547 348 :KLILKKQNPKLIDE 1rcqA 265 :IGVVAMGYADGYPR T0547 362 :LYDLYK 1rcqA 280 :AADGTL T0547 378 :LHDSIDHLESILTLFDLGYVD 1rcqA 289 :DGKPGRLVGRVSMDMLTVDLT T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQ 1rcqA 311 :HPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLC Number of specific fragments extracted= 25 number of extra gaps= 4 total=274 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_2041471678.pdb -s /var/tmp/to_scwrl_2041471678.seq -o /var/tmp/from_scwrl_2041471678.pdb > /var/tmp/scwrl_2041471678.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2041471678.pdb Number of alignments=13 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3gwqA/T0547-3gwqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 3gwqA expands to /projects/compbio/data/pdb/3gwq.pdb.gz 3gwqA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 128, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 132, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 134, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 136, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 138, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 140, because occupancy 0.500 <= existing 0.500 in 3gwqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 527, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 531, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 533, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 535, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 537, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 539, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 541, because occupancy 0.500 <= existing 0.500 in 3gwqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 767, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 771, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 775, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 777, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 779, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 781, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 808, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 812, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 814, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 816, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 818, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 820, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 822, because occupancy 0.500 <= existing 0.500 in 3gwqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 921, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 925, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 927, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 929, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 931, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 933, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 935, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 937, because occupancy 0.500 <= existing 0.500 in 3gwqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 959, because occupancy 0.500 <= existing 0.500 in 3gwqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 963, because occupancy 0.500 <= existing 0.500 in 3gwqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 965, because occupancy 0.500 <= existing 0.500 in 3gwqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 969, because occupancy 0.500 <= existing 0.500 in 3gwqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 980, because occupancy 0.500 <= existing 0.500 in 3gwqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 984, because occupancy 0.500 <= existing 0.500 in 3gwqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 986, because occupancy 0.500 <= existing 0.500 in 3gwqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 988, because occupancy 0.370 <= existing 0.380 in 3gwqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 990, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1030, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1426, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1430, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1432, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1434, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1436, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1438, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1440, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1442, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1833, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1837, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1839, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1841, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1843, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1845, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1847, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1849, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1930, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1934, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 1936, because occupancy 0.500 <= existing 0.500 in 3gwqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2588, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 2592, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 2594, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 2596, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 2598, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 2600, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 2602, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 2604, because occupancy 0.500 <= existing 0.500 in 3gwqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3187, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 3191, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 3193, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 3195, because occupancy 0.500 <= existing 0.500 in 3gwqA Skipped atom 3197, because occupancy 0.500 <= existing 0.500 in 3gwqA # T0547 read from 3gwqA/T0547-3gwqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 3gwqA read from 3gwqA/T0547-3gwqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 3gwqA to template set # found chain 3gwqA in template set Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 27 :KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 27 :QLTDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 128 :PITVNGFKDRE 3gwqA 115 :RVLMANQLVGR T0547 140 :INIGF 3gwqA 126 :RNMMM T0547 146 :AAEM 3gwqA 131 :VAEL T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHS 3gwqA 162 :VNKQLQVLLELGVPG T0547 202 :SKFGLTS 3gwqA 177 :GRTGVRD T0547 209 :TELIEAVNLLKEN 3gwqA 185 :AQRNAVLEAITRY T0547 222 :KLL 3gwqA 199 :DTL T0547 226 :QFTMIHFHLGSQ 3gwqA 202 :KLAGVELYEGVL T0547 239 :TEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 214 :KEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAV 3gwqA 241 :RAPAVLSGAGSAW T0547 296 :ANDVVFILKNIAEQ 3gwqA 254 :YDVVAEEFVKASET T0547 313 :LEPDIFIESGRFV 3gwqA 268 :GKVEVVLRPGCYL T0547 328 :NHAVLIA 3gwqA 310 :PALQLWA T0547 337 :LELFSQ 3gwqA 319 :QSIPEP T0547 347 :NKLILKKQNPKLIDE 3gwqA 325 :DRAIIGLGKRDSAFD T0547 367 :KSIK 3gwqA 341 :GMPE T0547 377 :YLHD 3gwqA 359 :IAAS T0547 381 :SIDHLE 3gwqA 364 :GWEIFG T0547 388 :ILTLFDLGYVD 3gwqA 370 :LMDQHAYLRIP T0547 399 :LQDRSNAEILTHLITKKA 3gwqA 382 :GADLKVGDMIAFDISHPC T0547 417 :ILLLGD 3gwqA 401 :TFDKWR T0547 538 :ISINEKGYEVEGIIEAQ 3gwqA 408 :VLVVDPAYRVTEVIETF Number of specific fragments extracted= 26 number of extra gaps= 1 total=300 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_115628305.pdb -s /var/tmp/to_scwrl_115628305.seq -o /var/tmp/from_scwrl_115628305.pdb > /var/tmp/scwrl_115628305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_115628305.pdb Number of alignments=14 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xfcA/T0547-1xfcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1xfcA expands to /projects/compbio/data/pdb/1xfc.pdb.gz 1xfcA:# T0547 read from 1xfcA/T0547-1xfcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1xfcA read from 1xfcA/T0547-1xfcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1xfcA to template set # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVN 1xfcA 33 :GHAQLMAVVKAD T0547 89 :QYPGFVKNLVKLGK 1xfcA 49 :GATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1xfcA 63 :AELGVATVDEALALRADGITA T0547 128 :PITVNGFKDRE 1xfcA 84 :PVLAWLHPPGI T0547 141 :NIGF 1xfcA 95 :DFGP T0547 146 :AAEMGH 1xfcA 99 :ALLADV T0547 153 :I 1xfcA 105 :Q T0547 155 :LTIEGLNELEAIIDIAKE 1xfcA 106 :VAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTELIEAVNLLKE 1xfcA 140 :RNGVGPAQFPAMLTALRQ T0547 221 :NKLL 1xfcA 161 :EDAV T0547 226 :QFTMIHFH 1xfcA 165 :RLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 282 :FKNEKSR 1xfcA 219 :RPDLTFD T0547 318 :FIESGRFVAA 1xfcA 226 :LVRPGIAVYG T0547 328 :NHAVLIAPVLELFSQ 1xfcA 249 :PAMTVKCAVALVKSI T0547 343 :EYAENKLILKKQNPKLIDE 1xfcA 278 :PRDTNLALLPIGYADGVFR T0547 362 :LYD 1xfcA 298 :LGG T0547 376 :EYL 1xfcA 301 :RLE T0547 379 :HDSIDHLESILTLFDLGYVD 1xfcA 308 :GRRCPGVGRICMDQFMVDLG T0547 399 :LQ 1xfcA 329 :GP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQDWA T0547 426 :PADLLA 1xfcA 360 :GTIHYE Number of specific fragments extracted= 25 number of extra gaps= 2 total=325 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1955932746.pdb -s /var/tmp/to_scwrl_1955932746.seq -o /var/tmp/from_scwrl_1955932746.pdb > /var/tmp/scwrl_1955932746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1955932746.pdb Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2vd8A/T0547-2vd8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2vd8A expands to /projects/compbio/data/pdb/2vd8.pdb.gz 2vd8A:Skipped atom 187, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 188, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 189, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 190, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 192, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 193, because occupancy 0.500 <= existing 0.500 in 2vd8A Bad short name: CH1 for alphabet: pdb_atoms Bad short name: N1 for alphabet: pdb_atoms Bad short name: C2 for alphabet: pdb_atoms Bad short name: C2' for alphabet: pdb_atoms Bad short name: C3 for alphabet: pdb_atoms Bad short name: O3 for alphabet: pdb_atoms Bad short name: C4 for alphabet: pdb_atoms Bad short name: C4' for alphabet: pdb_atoms Bad short name: C5 for alphabet: pdb_atoms Bad short name: C6 for alphabet: pdb_atoms Bad short name: C5' for alphabet: pdb_atoms Bad short name: OP4 for alphabet: pdb_atoms Bad short name: P for alphabet: pdb_atoms Bad short name: OP1 for alphabet: pdb_atoms Bad short name: OP2 for alphabet: pdb_atoms Bad short name: OP3 for alphabet: pdb_atoms Bad short name: CH1 for alphabet: pdb_atoms Bad short name: CH1 for alphabet: pdb_atoms Bad short name: CH1 for alphabet: pdb_atoms Bad short name: CH1 for alphabet: pdb_atoms Bad short name: CH1 for alphabet: pdb_atoms Bad short name: CH1 for alphabet: pdb_atoms Bad short name: CH1 for alphabet: pdb_atoms Skipped atom 1226, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 1227, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 1228, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 1229, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 1230, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 1231, because occupancy 0.500 <= existing 0.500 in 2vd8A Bad short name: CH1 for alphabet: pdb_atoms Bad short name: CH1 for alphabet: pdb_atoms Bad short name: CH1 for alphabet: pdb_atoms Bad short name: CH1 for alphabet: pdb_atoms Bad short name: CH1 for alphabet: pdb_atoms Bad short name: CH1 for alphabet: pdb_atoms Bad short name: CH1 for alphabet: pdb_atoms Bad short name: CH1 for alphabet: pdb_atoms Skipped atom 2601, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 2602, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 2603, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 2604, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 2605, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 2606, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 2607, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 2608, because occupancy 0.500 <= existing 0.500 in 2vd8A Bad short name: CH1 for alphabet: pdb_atoms Skipped atom 2925, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 2926, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 2927, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 2928, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 2929, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 2930, because occupancy 0.500 <= existing 0.500 in 2vd8A Skipped atom 2931, because occupancy 0.500 <= existing 0.500 in 2vd8A Bad short name: CH1 for alphabet: pdb_atoms # T0547 read from 2vd8A/T0547-2vd8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2vd8A read from 2vd8A/T0547-2vd8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2vd8A to template set # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)K353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 76 :KGGFNAVYP 2vd8A 31 :PSDVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 2vd8A 62 :TRLAVAFLDEALVLRRAGITA T0547 128 :PITVNGFKDRE 2vd8A 83 :PILVLGPSPPR T0547 141 :NIGF 2vd8A 94 :DINV T0547 146 :AAEMG 2vd8A 98 :AAEND T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 188 :S 2vd8A 137 :G T0547 203 :KFGLTS 2vd8A 138 :RIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLL 2vd8A 154 :LEGAPFL T0547 226 :QFTMIHFHLG 2vd8A 161 :ELEGVYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEY 2vd8A 204 :VHTANSAATLR T0547 282 :FKNEKSR 2vd8A 215 :FQGITFN T0547 318 :FIESGRFVAA 2vd8A 222 :AVRIGIAMYG T0547 328 :NHAVLI 2vd8A 248 :PALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 346 :EN 2vd8A 266 :DG T0547 348 :KLI 2vd8A 273 :TYR T0547 354 :QN 2vd8A 279 :EE T0547 356 :PKLIDE 2vd8A 290 :ADGWLR T0547 374 :ALEYL 2vd8A 297 :LQGFE T0547 382 :IDHLESILT 2vd8A 309 :VPIVGRVTM T0547 393 :DLGYVD 2vd8A 318 :DQFMIH T0547 399 :LQDRSNA 2vd8A 325 :PCEVPLG T0547 409 :THLITKKAILLLGDKQN 2vd8A 335 :TLIGRQGDEYISATEVA T0547 426 :PADLLAIQ 2vd8A 355 :GTINYEII Number of specific fragments extracted= 39 number of extra gaps= 0 total=364 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_108281941.pdb -s /var/tmp/to_scwrl_108281941.seq -o /var/tmp/from_scwrl_108281941.pdb > /var/tmp/scwrl_108281941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_108281941.pdb Number of alignments=16 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bd0A/T0547-1bd0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1bd0A/T0547-1bd0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1bd0A read from 1bd0A/T0547-1bd0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)S555 because last residue in template chain is (1bd0A)G382 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 1bd0A 5 :HRDTWAEVDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKVN 1bd0A 30 :DDTHIMAVVKAN T0547 89 :QYPGFVKNLVKLGK 1bd0A 46 :GDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1bd0A 60 :SRLAVAFLDEALALREKGIEA T0547 128 :PITVNGFKDRE 1bd0A 81 :PILVLGASRPA T0547 141 :NIGF 1bd0A 92 :DAAL T0547 146 :AAEMG 1bd0A 96 :AAQQR T0547 153 :ITLTIEGLNELEAIIDIAK 1bd0A 101 :IALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLH 1bd0A 120 :GPFPIHFHLKMDTG T0547 202 :SKFGLTS 1bd0A 135 :GRLGVKD T0547 209 :TELIEAVNLLKENKLL 1bd0A 143 :EETKRIVALIERHPHF T0547 226 :QFTMIHFHLGSQI 1bd0A 159 :VLEGLYTHFATAD T0547 239 :TEIHPLKKA 1bd0A 173 :VNTDYFSYQ T0547 252 :GNIYTELRKMGAKNLKAINLGGGLAVEY 1bd0A 182 :YTRFLHMLEWLPSRPPLVHCANSAASLR T0547 282 :FKNE 1bd0A 210 :FPDR T0547 287 :SR 1bd0A 214 :TF T0547 313 :L 1bd0A 216 :N T0547 318 :FIESGRFVAA 1bd0A 217 :MVRFGIAMYG T0547 328 :NHAVLIAPVLELFSQ 1bd0A 243 :EAFSLHSRLVHVKKL T0547 343 :EYAENKLILKKQNPKLIDE 1bd0A 272 :QTEEWIGTIPIGYADGWLR T0547 362 :LYDL 1bd0A 292 :LQHF T0547 378 :LHDSIDHLESILT 1bd0A 300 :DGQKAPIVGRICM T0547 393 :DLGYVDL 1bd0A 313 :DQCMIRL T0547 400 :QDRSNAEILTHLITKKAILL 1bd0A 321 :GPLPVGTKVTLIGRQGDEVI T0547 428 :DLLAIQDEVQERY 1bd0A 341 :SIDDVARHLETIN T0547 448 :QSM 1bd0A 354 :YEV T0547 453 :FWGLEQNFP 1bd0A 357 :PCTISYRVP T0547 537 :IISINEK 1bd0A 366 :RIFFRHK T0547 546 :EVEGIIEAQ 1bd0A 373 :RIMEVRNAI Number of specific fragments extracted= 29 number of extra gaps= 0 total=393 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1023030317.pdb -s /var/tmp/to_scwrl_1023030317.seq -o /var/tmp/from_scwrl_1023030317.pdb > /var/tmp/scwrl_1023030317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1023030317.pdb Number of alignments=17 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3co8A/T0547-3co8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 3co8A expands to /projects/compbio/data/pdb/3co8.pdb.gz 3co8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0547 read from 3co8A/T0547-3co8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 3co8A read from 3co8A/T0547-3co8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 3co8A to template set # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 T0547 44 :KGP 3co8A 6 :HRS T0547 47 :LLLRFPHLIQKQIENIYGNF 3co8A 10 :RIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVN 3co8A 30 :GAKTLWLAVKSN T0547 89 :QYPGFVKNLVKLGK 3co8A 46 :GLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGPIDVKY T0547 142 :IGF 3co8A 93 :API T0547 146 :AAEMG 3co8A 96 :ASKYH T0547 153 :ITLTIEGLNELEAIIDIA 3co8A 101 :FLTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLHS 3co8A 119 :GKEKLSVNLAVDTGM T0547 202 :SKFGLTS 3co8A 134 :NRIGVRS T0547 209 :TELIEAVNLLKEN 3co8A 142 :KDLKDEIEFLQEH T0547 222 :KLL 3co8A 156 :DHF T0547 226 :QFTMIHFHL 3co8A 159 :SYDGIFTHF T0547 249 :NEAGNIYTELRKMGA 3co8A 179 :QRQKNRWYELIDGLI T0547 265 :NLKAINLGG 3co8A 194 :MPRYVHVMN T0547 279 :Y 3co8A 208 :Y T0547 282 :FKNEKSR 3co8A 209 :HSKELPG T0547 314 :EPD 3co8A 216 :CNS T0547 318 :FIESGRFVAA 3co8A 219 :IARVGTVVYG T0547 328 :NHAVLIAPVLELFSQ 3co8A 244 :PVFELKSALTFVKKI T0547 343 :EYAENKLILK 3co8A 273 :SRDTWIGTLP T0547 353 :KQNPKLIDELY 3co8A 284 :GYGDGWLAEYQ T0547 376 :E 3co8A 295 :D T0547 377 :YLHDSIDHLESILT 3co8A 300 :IDGQKCRQVGQIAM T0547 393 :DLGYVD 3co8A 314 :DQMMVA T0547 399 :LQDRSNAEILTHL 3co8A 321 :PHEYPIGTEVTLI Number of specific fragments extracted= 26 number of extra gaps= 0 total=419 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_395740071.pdb -s /var/tmp/to_scwrl_395740071.seq -o /var/tmp/from_scwrl_395740071.pdb > /var/tmp/scwrl_395740071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_395740071.pdb Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vfsA/T0547-1vfsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1vfsA expands to /projects/compbio/data/pdb/1vfs.pdb.gz 1vfsA:Bad short name: CX for alphabet: pdb_atoms Bad short name: OQ1 for alphabet: pdb_atoms Bad short name: OQ2 for alphabet: pdb_atoms # T0547 read from 1vfsA/T0547-1vfsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1vfsA read from 1vfsA/T0547-1vfsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1vfsA to template set # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVN 1vfsA 29 :PRSALMAVVKSN T0547 89 :QYPGFVKNLVKLGK 1vfsA 45 :GAVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGFKDR 1vfsA 79 :GRIMCWLWTPG T0547 140 :INIGF 1vfsA 90 :GPWRE T0547 146 :AAEMGH 1vfsA 95 :AIETDI T0547 153 :I 1vfsA 101 :D T0547 155 :LTIEGLNELEAIIDIAKE 1vfsA 102 :VSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLH 1vfsA 131 :DTG T0547 188 :S 1vfsA 135 :G T0547 203 :KFGLTSTELIEAVNLLK 1vfsA 136 :RNGCQPADWAELVGAAV T0547 220 :ENKLL 1vfsA 156 :AEGTV T0547 226 :QFTMIHFHLGS 1vfsA 161 :QVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEY 1vfsA 200 :DPEVRHIANSPATLT T0547 282 :FKNEKSR 1vfsA 215 :LPETHFD T0547 318 :FIESGRFVAA 1vfsA 222 :LVRTGLAVYG T0547 328 :NHAVLIAPVLELFSQ 1vfsA 248 :PAMTLRASLALVKTV T0547 343 :EYAENKLILK 1vfsA 277 :ESETHLALVP T0547 353 :KQ 1vfsA 291 :DG T0547 358 :LIDELYD 1vfsA 293 :IPRNASG T0547 376 :E 1vfsA 300 :R T0547 377 :YLHDSIDHLESILT 1vfsA 305 :VAGKIRRAAGRIAM T0547 393 :DLGYVD 1vfsA 319 :DQFVVD T0547 399 :LQDRSNAEILTHLITKKA 1vfsA 327 :EDLAEAGDEAVILGDAER T0547 426 :PAD 1vfsA 345 :GEP T0547 429 :LLAIQDEV 1vfsA 349 :AEDWAQAA T0547 553 :AQSILDTL 1vfsA 357 :HTIAYEIV Number of specific fragments extracted= 31 number of extra gaps= 0 total=450 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1142658599.pdb -s /var/tmp/to_scwrl_1142658599.seq -o /var/tmp/from_scwrl_1142658599.pdb > /var/tmp/scwrl_1142658599.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1142658599.pdb Number of alignments=19 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3llxA/T0547-3llxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 3llxA expands to /projects/compbio/data/pdb/3llx.pdb.gz 3llxA:Skipped atom 41, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 43, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 45, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 47, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 49, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 51, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 53, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 55, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 159, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 161, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 163, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 165, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 167, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 169, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 171, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 173, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 175, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 177, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 179, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 181, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 183, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 185, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 187, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 189, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 202, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 204, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 206, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 208, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 210, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 212, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 267, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 269, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 271, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 273, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 275, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 277, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 279, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 281, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 283, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 336, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 338, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 340, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 342, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 346, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 348, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 350, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 352, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 354, because occupancy 0.500 <= existing 0.500 in 3llxA Bad short name: N1 for alphabet: pdb_atoms Bad short name: N1 for alphabet: pdb_atoms Bad short name: C2 for alphabet: pdb_atoms Bad short name: C2 for alphabet: pdb_atoms Bad short name: C2' for alphabet: pdb_atoms Bad short name: C2' for alphabet: pdb_atoms Bad short name: C3 for alphabet: pdb_atoms Bad short name: C3 for alphabet: pdb_atoms Bad short name: O3 for alphabet: pdb_atoms Bad short name: O3 for alphabet: pdb_atoms Bad short name: C4 for alphabet: pdb_atoms Bad short name: C4 for alphabet: pdb_atoms Bad short name: C4' for alphabet: pdb_atoms Bad short name: C4' for alphabet: pdb_atoms Bad short name: C5 for alphabet: pdb_atoms Bad short name: C5 for alphabet: pdb_atoms Bad short name: C6 for alphabet: pdb_atoms Bad short name: C6 for alphabet: pdb_atoms Bad short name: C5' for alphabet: pdb_atoms Bad short name: C5' for alphabet: pdb_atoms Bad short name: OP4 for alphabet: pdb_atoms Bad short name: OP4 for alphabet: pdb_atoms Bad short name: P for alphabet: pdb_atoms Bad short name: P for alphabet: pdb_atoms Bad short name: OP1 for alphabet: pdb_atoms Bad short name: OP1 for alphabet: pdb_atoms Bad short name: OP2 for alphabet: pdb_atoms Bad short name: OP2 for alphabet: pdb_atoms Bad short name: OP3 for alphabet: pdb_atoms Bad short name: OP3 for alphabet: pdb_atoms Skipped atom 455, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 457, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 459, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 461, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 463, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 465, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 467, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 469, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 548, because occupancy 0.200 <= existing 0.800 in 3llxA Skipped atom 550, because occupancy 0.200 <= existing 0.800 in 3llxA Skipped atom 552, because occupancy 0.200 <= existing 0.800 in 3llxA Skipped atom 554, because occupancy 0.200 <= existing 0.800 in 3llxA Skipped atom 556, because occupancy 0.200 <= existing 0.800 in 3llxA Skipped atom 558, because occupancy 0.200 <= existing 0.800 in 3llxA Skipped atom 560, because occupancy 0.200 <= existing 0.800 in 3llxA Skipped atom 562, because occupancy 0.200 <= existing 0.800 in 3llxA Skipped atom 590, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 592, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 594, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 596, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 598, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 600, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 602, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 825, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 827, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 829, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 831, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 833, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 835, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 837, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 839, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 841, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 871, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 873, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 875, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 877, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 879, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 881, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 883, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 885, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 898, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 900, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 902, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 904, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 906, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 908, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 910, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 912, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 914, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 916, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 918, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 920, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 922, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 924, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 926, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 928, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 930, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 932, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 954, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 956, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 958, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 960, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 962, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 964, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 966, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 968, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1012, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1014, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1016, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1018, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1020, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1022, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1024, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1026, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1038, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1040, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1042, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1044, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1046, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1048, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1245, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 1247, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 1249, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 1251, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 1253, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 1255, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 1257, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 1259, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 1261, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 1263, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 1265, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 1267, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 1269, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 1271, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 1273, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 1275, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 1277, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 1279, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 1308, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1310, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1312, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1314, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1316, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1318, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1320, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1322, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1324, because occupancy 0.500 <= existing 0.500 in 3llxA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1666, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1668, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1670, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1672, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1674, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1676, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1678, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 1782, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 1784, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 1786, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 1788, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 1790, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 1792, because occupancy 0.400 <= existing 0.600 in 3llxA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2055, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2057, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2059, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2061, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2063, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2065, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2067, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2069, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2071, because occupancy 0.500 <= existing 0.500 in 3llxA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2168, because occupancy 0.200 <= existing 0.800 in 3llxA Skipped atom 2170, because occupancy 0.200 <= existing 0.800 in 3llxA Skipped atom 2172, because occupancy 0.200 <= existing 0.800 in 3llxA Skipped atom 2174, because occupancy 0.200 <= existing 0.800 in 3llxA Skipped atom 2176, because occupancy 0.200 <= existing 0.800 in 3llxA Skipped atom 2178, because occupancy 0.200 <= existing 0.800 in 3llxA Skipped atom 2180, because occupancy 0.200 <= existing 0.800 in 3llxA Skipped atom 2248, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2250, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2252, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2254, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2256, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2258, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2260, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2262, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2264, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2275, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2277, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2279, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2281, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2283, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2285, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2287, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2289, because occupancy 0.400 <= existing 0.600 in 3llxA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2387, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2389, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2391, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2393, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2395, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2397, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2399, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2401, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2403, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2405, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2407, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2439, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 2441, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 2443, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 2445, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 2545, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2547, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2549, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2551, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2553, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2555, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2557, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2559, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2573, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2575, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2577, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2579, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2581, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2583, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2585, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2587, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2589, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2591, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2593, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2595, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2597, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2627, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2629, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2631, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2633, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2635, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2637, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2654, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2656, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2658, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2660, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2662, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2664, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2673, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2675, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2677, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2679, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2681, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2683, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2732, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2734, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2736, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2738, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2740, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2742, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2744, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2746, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2748, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 2789, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 2791, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 2793, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 2795, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 2797, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 2799, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 2801, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 2803, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 2805, because occupancy 0.300 <= existing 0.700 in 3llxA Skipped atom 2815, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2817, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2819, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2821, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2823, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2825, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2827, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2829, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2831, because occupancy 0.400 <= existing 0.600 in 3llxA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2931, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2933, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2935, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2937, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2939, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2941, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2943, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 2945, because occupancy 0.400 <= existing 0.600 in 3llxA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3015, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 3017, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 3019, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 3021, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 3023, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 3025, because occupancy 0.500 <= existing 0.500 in 3llxA Skipped atom 3027, because occupancy 0.500 <= existing 0.500 in 3llxA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3108, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 3110, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 3112, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 3114, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 3116, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 3118, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 3120, because occupancy 0.400 <= existing 0.600 in 3llxA Skipped atom 3122, because occupancy 0.400 <= existing 0.600 in 3llxA # T0547 read from 3llxA/T0547-3llxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 3llxA read from 3llxA/T0547-3llxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 3llxA to template set # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)I388 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 7 :WIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNL 3llxA 48 :LRTLEAAGYL T0547 102 :KDYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3llxA 59 :DSKSAPATVSTLAEAEAYAKAGYTDLLYAVGIAPAK T0547 139 :LINIGF 3llxA 95 :LKRVAA T0547 146 :AAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 101 :LRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSA 3llxA 128 :FGQDFSVFIEIDSDDH T0547 203 :KFGLTST 3llxA 144 :RGGIKPS T0547 213 :EAVNLLKENKL 3llxA 153 :KLLTIAKTLGE T0547 226 :QFTMIHFHLGSQIT 3llxA 164 :HFTGLMTHAGGSYA T0547 240 :EIHPLKKA 3llxA 180 :TEQGLKNF T0547 248 :LNEAGNIYTELRKMGA 3llxA 192 :CDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEY 3llxA 217 :TPTAHF T0547 282 :FKN 3llxA 223 :GED T0547 287 :S 3llxA 226 :F T0547 310 :KKDL 3llxA 227 :SDIS T0547 318 :FIESGRFVAAN 3llxA 231 :EVRAGVYTTFD T0547 329 :HAVLIAPVLE 3llxA 256 :AMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKKQNPKLIDE 3llxA 274 :LTDSGWMALSRD T0547 362 :L 3llxA 287 :G T0547 366 :YKSIKPSNAL 3llxA 288 :TAGQNRDFGY T0547 377 :YLHDSIDHLES 3llxA 305 :GSVLDGLCVNS T0547 392 :FDLGYVD 3llxA 318 :QEHGVIE T0547 399 :LQDRSNAEILTHLITKKAILL 3llxA 331 :LEDFPVGHQLRIMPNHACATA Number of specific fragments extracted= 27 number of extra gaps= 5 total=477 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1656240855.pdb -s /var/tmp/to_scwrl_1656240855.seq -o /var/tmp/from_scwrl_1656240855.pdb > /var/tmp/scwrl_1656240855.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1656240855.pdb Number of alignments=20 # command: # TryAllAlign to optimize cost = # ( 5.395 * align_constraints + 0.433 * phobic_fit + 5.237 * pred_nb11_back(9.650) + 3.487 * pred_bys_back + 3.032 * pred_alpha_back + 11.769 * wet6.5(6.500, /log(length)) + 2.146 * pred_n_notor_back + 59.013 * noncontact_bonus + 1.605 * break + 2.341 * pred_o_sep_back + 0.619 * sidechain_clashes + 2.571 * bystroff + 0.143 * contact(8.000) + 0.939 * alpha_prev + 0.741 * pred_n_sep_back + 0.319 * ehl2_constraints + 0.198 * deep_knot + 0.010 * cb14(14.000) ) # Will try all 20 alignments, # shrinking each end by up to 0.000*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 21: T0547+T0547-1twiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m:1twiA at pool[18] 4.781 cost/residue, 4731 clashes 0.291 breaks # command:# naming current conformation T0547.try1-al1 # command:# reading script from file T0547.t06.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2o0tA/T0547-2o0tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2o0tA/T0547-2o0tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2o0tA read from 2o0tA/T0547-2o0tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 8 :IWGNENF 2o0tA 11 :VWPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKE 2o0tA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2o0tA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 2o0tA 62 :G T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 2o0tA 118 :KSVSELTAAV T0547 148 :EMGHNIT 2o0tA 128 :KAGVGHI T0547 156 :TIEGLNELEAIIDIAKE 2o0tA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGIWAKSGG 2o0tA 160 :VRLTVGVEAHTHEFISTA T0547 200 :INSKFGL 2o0tA 179 :EDQKFGL T0547 207 :TSTELIEAVNLLKENKLLEQFT 2o0tA 188 :ASGAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2o0tA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMG 2o0tA 241 :EFG T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2o0tA 247 :TAQIATVDLGGGLGISYLPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 2o0tA 329 :HRR T0547 348 :KLI 2o0tA 332 :YVS T0547 353 :K 2o0tA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2o0tA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGY 2o0tA 366 :VPARLVGKHCESGDIIVRDT T0547 398 :DLQ 2o0tA 386 :WVP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2o0tA 425 :HAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 27 number of extra gaps= 3 total=504 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_2035487672.pdb -s /var/tmp/to_scwrl_2035487672.seq -o /var/tmp/from_scwrl_2035487672.pdb > /var/tmp/scwrl_2035487672.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2035487672.pdb Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2qghA/T0547-2qghA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2qghA/T0547-2qghA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2qghA read from 2qghA/T0547-2qghA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2qghA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)P461 because last residue in template chain is (2qghA)L402 T0547 31 :IIDIVKE 2qghA 4 :YEELFQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2qghA 11 :HKTPFYLYDFDKIKQAFLNYKEAF T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 35 :KGRKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGHNIT 2qghA 102 :KLNILFL T0547 156 :TIEGLNELEAIIDIAKE 2qghA 109 :NVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2qghA 126 :LGIKARISIRINPNIDAKTHPYISTG T0547 200 :INSKFGLTSTELIEAVNLLKENKLLEQFT 2qghA 153 :KENKFGVGEKEALEMFLWAKKSAFLEPVS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 182 :VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQFKNE 2qghA 216 :DLRFFDVGGGIGVSYENEETI T0547 291 :TLREYANDVVFI 2qghA 237 :KLYDYAQGILNA T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 249 :LQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AE 2qghA 284 :KR T0547 348 :KLILKK 2qghA 286 :FVIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNA 2qghA 293 :MNDFLRPSLYHAKHAIRVITP T0547 377 :YLHDSIDHLESILTLFDLGY 2qghA 320 :SPCDVVGPVCESSDTFLKDA T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 2qghA 340 :HLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 441 :LVNFSLFQSMPDFWGLEQNF 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 19 number of extra gaps= 0 total=523 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_409907356.pdb -s /var/tmp/to_scwrl_409907356.seq -o /var/tmp/from_scwrl_409907356.pdb > /var/tmp/scwrl_409907356.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_409907356.pdb Number of alignments=22 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1twiA/T0547-1twiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1twiA/T0547-1twiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1twiA read from 1twiA/T0547-1twiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1twiA in template set T0547 9 :WGNENFIIKNGKVCI 1twiA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1twiA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLG 1twiA 76 :FIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1twiA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1twiA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1twiA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1twiA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1twiA 190 :KKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLEQFT 1twiA 202 :IAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1twiA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1twiA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1twiA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1twiA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1twiA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1twiA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 1twiA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 438 :ERYLVNFSLFQSMPDFWGLEQN 1twiA 422 :KKGVFLIRERETYADLIAKDIV T0547 465 :LD 1twiA 444 :PP Number of specific fragments extracted= 21 number of extra gaps= 0 total=544 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1619745092.pdb -s /var/tmp/to_scwrl_1619745092.seq -o /var/tmp/from_scwrl_1619745092.pdb > /var/tmp/scwrl_1619745092.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1619745092.pdb Number of alignments=23 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2pljA/T0547-2pljA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2pljA/T0547-2pljA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2pljA read from 2pljA/T0547-2pljA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)G487 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 31 :IIDIVKE 2pljA 26 :IEASVEQ T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2pljA 33 :FGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINIGF 2pljA 109 :HPIKRDADIRDAL T0547 148 :EMGHNIT 2pljA 122 :AYGCNVF T0547 156 :TIEGLNELE 2pljA 129 :VVDNLNELE T0547 169 :IAKERFKP 2pljA 138 :KFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LEQFT 2pljA 186 :IRIKG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKN 2pljA 191 :LSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVM T0547 291 :TLREYANDVVFI 2pljA 246 :PIDQFCAPINEA T0547 307 :AEQKKD 2pljA 258 :LSLLPE T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2pljA 264 :TVHVLAEPGRFICAPAVTSVASVMGQAEREGQI T0547 348 :KLILKK 2pljA 297 :WYYLDD T0547 354 :QNPKLIDELYDLYKSI 2pljA 304 :IYGSFSGLMFDDARYP T0547 370 :KPSNALEYLHDSIDHLESILTLFDLGY 2pljA 323 :IKQGGELIPSVLSGPTCDSVDVIAENI T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLA 2pljA 350 :LLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQ T0547 480 :DITCDS 2pljA 384 :TIALNE Number of specific fragments extracted= 20 number of extra gaps= 1 total=564 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_61106127.pdb -s /var/tmp/to_scwrl_61106127.seq -o /var/tmp/from_scwrl_61106127.pdb > /var/tmp/scwrl_61106127.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_61106127.pdb Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knwA/T0547-1knwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1knwA/T0547-1knwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knwA read from 1knwA/T0547-1knwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1knwA in template set Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 30 :AIIDIVKE 1knwA 16 :NLLRLPAE T0547 43 :YKGPLLLRFPHLIQKQIENI 1knwA 24 :FGCPVWVYDAQIIRRQIAAL T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 1knwA 44 :KQFDVVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APITVNGF 1knwA 95 :DDIVFTAD T0547 135 :KDRELINIGF 1knwA 104 :IDQATLERVS T0547 148 :EMGHN 1knwA 114 :ELQIP T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 1knwA 137 :HRVWLRVNPGFGHGHSQKTNTG T0547 200 :INSKFGLTSTELIEAVNLLKENK 1knwA 160 :ENSKHGIWYTDLPAALDVIQRHH T0547 224 :LEQFT 1knwA 183 :LQLVG T0547 230 :IHFHLGSQ 1knwA 188 :IHMHIGSG T0547 239 :TEIHPLKKALNEAGNIYTEL 1knwA 196 :VDYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1knwA 218 :DLQAISAGGGLSVPYQQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKD 1knwA 240 :DTEHYYGLWNAAREQIARHLGH T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 262 :PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 348 :KLILKK 1knwA 295 :FVLVDA T0547 354 :QNPKLIDELYDLYKSI 1knwA 302 :FNDLMRPAMYGSYHHI T0547 370 :KPSNALE 1knwA 325 :RSLEHAP T0547 377 :YLHDSIDHLESILTLF 1knwA 333 :VETVVAGPLCESGDVF T0547 393 :DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1knwA 355 :NVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQ T0547 441 :LVNFSLFQSMPDFWGLEQNF 1knwA 402 :ARLIRRRQTIEELLALELLH Number of specific fragments extracted= 23 number of extra gaps= 0 total=587 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_37714878.pdb -s /var/tmp/to_scwrl_37714878.seq -o /var/tmp/from_scwrl_37714878.pdb > /var/tmp/scwrl_37714878.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_37714878.pdb Number of alignments=25 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2yxxA/T0547-2yxxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2yxxA/T0547-2yxxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2yxxA read from 2yxxA/T0547-2yxxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2yxxA in template set T0547 30 :AIIDIVKE 2yxxA 3 :ILRKVAEI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 11 :HGTPTYVYFEETLRKRSRLVKEVFE T0547 77 :G 2yxxA 36 :G T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGN T0547 135 :KDRELINIGF 2yxxA 92 :KSRDQMEHFL T0547 148 :EMGHNIT 2yxxA 102 :REDVRIV T0547 156 :TIEGLNELEAIIDI 2yxxA 109 :NVDSFEEMEIWREL T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2yxxA 123 :NPEGVEYFIRVNPEVDAKTHPHISTG T0547 200 :INSKFGLTSTELIEAVNLLK 2yxxA 150 :KKHKFGIPLEDLDSFMERFR T0547 222 :K 2yxxA 170 :S T0547 224 :LEQFT 2yxxA 171 :MNIRG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 176 :LHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFKN 2yxxA 205 :GFEEINIGGGWGINYSGEEL T0547 291 :TLREYANDV 2yxxA 225 :DLSSYREKV T0547 307 :AEQKK 2yxxA 234 :VPDLK T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2yxxA 239 :RFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKA T0547 348 :KLILKK 2yxxA 273 :FVVVDG T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2yxxA 280 :MNVLIRPALYSAYHRIFVLGKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2yxxA 305 :MRADVVGPLCESGDVIAYDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWG 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFK Number of specific fragments extracted= 21 number of extra gaps= 0 total=608 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_60888417.pdb -s /var/tmp/to_scwrl_60888417.seq -o /var/tmp/from_scwrl_60888417.pdb > /var/tmp/scwrl_60888417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_60888417.pdb Number of alignments=26 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2p3eA/T0547-2p3eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2p3eA/T0547-2p3eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2p3eA read from 2p3eA/T0547-2p3eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 12 :ENFIIKNGKVCI 2p3eA 9 :PYLEYRDGELFI T0547 27 :KKPAIIDIVKE 2p3eA 21 :EGVSLKELAQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2p3eA 32 :FGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVY T0547 132 :NGFKDRELINIGF 2p3eA 108 :GVGKTEKELTDAV T0547 148 :EMGHNIT 2p3eA 121 :DSEILMF T0547 156 :TIEGLNELEAIIDIAKE 2p3eA 128 :NVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2p3eA 175 :KFGVDIREAQKEYEYASKLENLEIVG T0547 230 :I 2p3eA 201 :I T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2p3eA 235 :DIKYLDIGGGLGIKYKPEDKEP T0547 291 :TLREYANDV 2p3eA 257 :APQDLADLL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 348 :KLILKK 2p3eA 306 :FIIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNAL 2p3eA 313 :MNDLIRPSIYNAYHHIIPVETK T0547 378 :LHDSIDHLESILTLFDLGY 2p3eA 340 :VADIVGPICETGDFLALDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2p3eA 359 :EIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2p3eA 397 :ENGSVKLIRKRENYDYIVEPSL Number of specific fragments extracted= 20 number of extra gaps= 1 total=628 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_31164710.pdb -s /var/tmp/to_scwrl_31164710.seq -o /var/tmp/from_scwrl_31164710.pdb > /var/tmp/scwrl_31164710.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_31164710.pdb Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2j66A/T0547-2j66A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2j66A/T0547-2j66A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2j66A read from 2j66A/T0547-2j66A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)P356 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S368 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)Q458 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 28 :KPAIIDIVKE 2j66A 5 :QAEITALTKR T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2j66A 15 :FETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGP T0547 135 :KDRELINIGF 2j66A 95 :KKRSELEIAV T0547 148 :EMGHNIT 2j66A 105 :QSGIYCI T0547 156 :TIEGLNELEAIIDIAKE 2j66A 112 :IAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFT 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2j66A 184 :IHVYTGTQNLNTDSIIESMKYTVDLGRNIY T0547 260 :KMGA 2j66A 215 :RYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 284 :NEK 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKNIAEQ 2j66A 241 :DIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEV T0547 348 :KLILKK 2j66A 296 :FVIVDG T0547 354 :QN 2j66A 303 :MH T0547 369 :I 2j66A 322 :M T0547 377 :YLHDSIDHLESILTLFDLGY 2j66A 337 :EKVTIAGPLCTPEDCLGKDV T0547 398 :DLQDRSNAEILTHLITKKAILLLGD 2j66A 357 :HVPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPADLLAIQDEVQER 2j66A 383 :HFLGHPTPIEILKRNGS T0547 441 :LVNFSLFQSMPDFWGLE 2j66A 400 :YELIRRKGTADDIVATQ Number of specific fragments extracted= 22 number of extra gaps= 1 total=650 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1154153985.pdb -s /var/tmp/to_scwrl_1154153985.seq -o /var/tmp/from_scwrl_1154153985.pdb > /var/tmp/scwrl_1154153985.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1154153985.pdb Number of alignments=28 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2nvaA/T0547-2nvaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2nvaA/T0547-2nvaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2nvaA read from 2nvaA/T0547-2nvaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 29 :PAIIDIVKE 2nvaA 3 :SVVNNILKA T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNF 2nvaA 12 :HPHQTKSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 148 :EMGHNIT 2nvaA 104 :DQGVDIA T0547 156 :TIEGLNELEAIIDIAKE 2nvaA 111 :TFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGV 2nvaA 128 :CKMILRIRCDDPNA T0547 197 :SGGINSKFGLTSTELIEAVNLLKENK 2nvaA 142 :TVQLGNKFGANEDEIRHLLEYAKQLD T0547 224 :LEQFT 2nvaA 168 :IEVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 173 :ISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLY T0547 348 :KLILKK 2nvaA 279 :EYFFNE T0547 354 :QNPKLID 2nvaA 286 :TYGGFSN T0547 362 :LYDLYKSI 2nvaA 293 :VIFEKSVP T0547 370 :KPSNALE 2nvaA 307 :DVPDDEE T0547 377 :YLHDSIDHLESILTLFDLGY 2nvaA 315 :VPSVLYGCTCDGVDVINHNV T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQ 2nvaA 335 :ALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVY Number of specific fragments extracted= 21 number of extra gaps= 0 total=671 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_413681812.pdb -s /var/tmp/to_scwrl_413681812.seq -o /var/tmp/from_scwrl_413681812.pdb > /var/tmp/scwrl_413681812.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_413681812.pdb Number of alignments=29 # Reading fragments from alignment file # Attempting to read fragment alignments from file 7odcA/T0547-7odcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 7odcA/T0547-7odcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 7odcA read from 7odcA/T0547-7odcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 18 :NGKVCINYEKKPAIIDIVKELR 7odcA 7 :DEFDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANP T0547 135 :KDRELINIGF 7odcA 115 :KQVSQIKYAA T0547 148 :EMGHNIT 7odcA 125 :SNGVQMM T0547 156 :TIEGLNELEAIIDIAKE 7odcA 132 :TFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LEQFT 7odcA 189 :IDVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 194 :VSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEY 7odcA 228 :SMHLLDIGGGFPGSE T0547 283 :KNEK 7odcA 243 :DTKL T0547 291 :TLREYANDVVFILKNIA 7odcA 247 :KFEEITSVINPALDKYF T0547 308 :EQKKD 7odcA 265 :SDSGV T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 270 :RIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKK 7odcA 312 :QTFMYYVND T0547 354 :QNPKLIDELYDLYK 7odcA 322 :VYGSFNCILYDHAH T0547 368 :SIKPSNALEYLHDSIDHLESILTLFDLGY 7odcA 342 :KRPKPDEKYYSSSIWGPTCDGLDRIVERC T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLA 7odcA 371 :NLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPN T0547 476 :ASIWD 7odcA 405 :IYYVM Number of specific fragments extracted= 21 number of extra gaps= 0 total=692 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_22903231.pdb -s /var/tmp/to_scwrl_22903231.seq -o /var/tmp/from_scwrl_22903231.pdb > /var/tmp/scwrl_22903231.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_22903231.pdb Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3gwqA/T0547-3gwqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 3gwqA/T0547-3gwqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 3gwqA read from 3gwqA/T0547-3gwqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 5 :GIDI 3gwqA 35 :EWNL T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 39 :LNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNN 3gwqA 95 :WGITLATAHQVRAAYHGGV T0547 127 :APITVNGF 3gwqA 114 :SRVLMANQ T0547 135 :KDRELINIGFIAAE 3gwqA 123 :VGRRNMMMVAELLS T0547 149 :MGHNITLTIEGLNELEAIIDIAKE 3gwqA 138 :PEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRV 3gwqA 162 :VNKQLQVLLEL T0547 187 :HSAGV 3gwqA 173 :GVPGG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKEN 3gwqA 183 :DAAQRNAVLEAITRY T0547 222 :KLLEQFT 3gwqA 199 :DTLKLAG T0547 230 :IHFHLG 3gwqA 206 :VELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAV 3gwqA 242 :APAVLSGAGSAWY T0547 293 :REYAND 3gwqA 255 :DVVAEE T0547 303 :LKNIAEQ 3gwqA 261 :FVKASET T0547 313 :LEPDIFIESGRFVAA 3gwqA 268 :GKVEVVLRPGCYLTH T0547 328 :NHAVLIA 3gwqA 310 :PALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 348 :KLILKK 3gwqA 326 :RAIIGL T0547 354 :QNPKLIDE 3gwqA 333 :KRDSAFDA T0547 367 :KSI 3gwqA 341 :GMP T0547 370 :KPSNALE 3gwqA 355 :APRDIAA T0547 377 :YLHDSIDHLES 3gwqA 363 :EGWEIFGLMDQ T0547 389 :LTLFDLG 3gwqA 374 :HAYLRIP T0547 398 :DLQDRSNAEILTHL 3gwqA 381 :AGADLKVGDMIAFD T0547 450 :MPDFWGLEQNFPI 3gwqA 395 :ISHPCLTFDKWRQ T0547 512 :GFFL 3gwqA 408 :VLVV T0547 542 :EKGYEVEGIIEA 3gwqA 412 :DPAYRVTEVIET Number of specific fragments extracted= 30 number of extra gaps= 1 total=722 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_2022922849.pdb -s /var/tmp/to_scwrl_2022922849.seq -o /var/tmp/from_scwrl_2022922849.pdb > /var/tmp/scwrl_2022922849.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2022922849.pdb Number of alignments=31 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3llxA/T0547-3llxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 3llxA/T0547-3llxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 3llxA read from 3llxA/T0547-3llxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 9 :AHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNL 3llxA 48 :LRTLEAAGYL T0547 101 :GK 3llxA 61 :KS T0547 106 :YGLEAGSKAELLLAMAYNNE 3llxA 63 :APATVSTLAEAEAYAKAGYT T0547 127 :APITV 3llxA 83 :DLLYA T0547 132 :NGF 3llxA 89 :GIA T0547 135 :KDRELINIGF 3llxA 93 :AKLKRVAALR T0547 148 :EMGHNITLTIEGLNELEAIIDIAKE 3llxA 103 :QQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRL 3llxA 128 :FGQDFSVFIEIDS T0547 189 :AGV 3llxA 141 :DDH T0547 203 :KFGLTST 3llxA 144 :RGGIKPS T0547 213 :EAVNLLKENK 3llxA 153 :KLLTIAKTLG T0547 224 :LEQFT 3llxA 163 :EHFTG T0547 230 :IHFHLGS 3llxA 168 :LMTHAGG T0547 237 :QITEIHPLKKALNE 3llxA 177 :ACNTEQGLKNFAKQ T0547 251 :AGNIYTELRKMGA 3llxA 195 :VRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVE 3llxA 217 :TPTAH T0547 306 :IAEQKKDLE 3llxA 222 :FGEDFSDIS T0547 318 :FIESGRFVAAN 3llxA 231 :EVRAGVYTTFD T0547 329 :HAVLIAPVLE 3llxA 256 :AMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKK 3llxA 274 :LTDS T0547 363 :YDLYKSIKPSNALE 3llxA 279 :WMALSRDSGTAGQN T0547 377 :YLHDSID 3llxA 309 :DGLCVNS T0547 386 :ESILTLFDLGYVDLQDRSNAEILTHLI 3llxA 318 :QEHGVIELSDAYQLEDFPVGHQLRIMP T0547 414 :KKAILLLGD 3llxA 345 :NHACATAAM T0547 423 :K 3llxA 355 :P T0547 440 :YL 3llxA 356 :VY T0547 481 :ITCDSDGEISYS 3llxA 358 :HVLMSDGSHNTW Number of specific fragments extracted= 32 number of extra gaps= 5 total=754 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_530599176.pdb -s /var/tmp/to_scwrl_530599176.seq -o /var/tmp/from_scwrl_530599176.pdb > /var/tmp/scwrl_530599176.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_530599176.pdb Number of alignments=32 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rcqA/T0547-1rcqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1rcqA/T0547-1rcqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1rcqA read from 1rcqA/T0547-1rcqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)K44 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 45 :GPL 1rcqA 2 :RPA T0547 48 :LLRFPHLIQKQIENIYGNF 1rcqA 6 :ALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKV 1rcqA 27 :RALAVIKA T0547 88 :NQYPGFVKNLVKLG 1rcqA 39 :HGAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEASELELIV T0547 148 :EMG 1rcqA 92 :AHD T0547 153 :ITLTIEGLNELEAI 1rcqA 95 :FWCVVHCAWQLEAI T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLHS 1rcqA 124 :DSGM T0547 191 :V 1rcqA 128 :H T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 223 :LLEQFT 1rcqA 149 :KVAKIV T0547 230 :IHFHLG 1rcqA 155 :MMSHFS T0547 236 :SQITEIHPLKKALNEAGNIY 1rcqA 162 :ADELDCPRTEEQLAAFSAAS T0547 262 :GAK 1rcqA 183 :GLE T0547 269 :INLGG 1rcqA 188 :ISLRN T0547 292 :LREYA 1rcqA 193 :SPAVL T0547 306 :IAEQ 1rcqA 198 :GWPK T0547 313 :LEPDIFI 1rcqA 202 :VPSDWVR T0547 320 :ESGRFVAANHAVLIAPVLELFSQE 1rcqA 223 :HPLADRLRPVMTLESKVISVRDLP T0547 344 :YA 1rcqA 261 :RR T0547 348 :KLILKK 1rcqA 265 :IGVVAM T0547 354 :QNPKLIDE 1rcqA 272 :YADGYPRH T0547 371 :PSNALE 1rcqA 280 :AADGTL T0547 377 :YLHDSIDHLESILTLFDLGY 1rcqA 291 :KPGRLVGRVSMDMLTVDLTD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1rcqA 311 :HPQAGLGSRVELWGPNVPVGALAAQFGSIP T0547 557 :LDTLED 1rcqA 341 :YQLLCN Number of specific fragments extracted= 27 number of extra gaps= 4 total=781 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_969327425.pdb -s /var/tmp/to_scwrl_969327425.seq -o /var/tmp/from_scwrl_969327425.pdb > /var/tmp/scwrl_969327425.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_969327425.pdb Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2dy3A/T0547-2dy3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2dy3A/T0547-2dy3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2dy3A read from 2dy3A/T0547-2dy3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKV 2dy3A 25 :GPAKLMAVVKA T0547 88 :NQYPGFVKNLVKLGK 2dy3A 40 :HGVEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGF 2dy3A 75 :QEVLCWIW T0547 135 :K 2dy3A 84 :P T0547 140 :INIGF 2dy3A 88 :FRAAI T0547 148 :EMGH 2dy3A 93 :DRNI T0547 153 :I 2dy3A 97 :D T0547 155 :LTIEGLNELEAIID 2dy3A 98 :LAVISPAHAKALIE T0547 173 :RFKPKPNIGLRVRLHSA 2dy3A 112 :TDAEHIRVSIKIDSGLH T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIEVTG T0547 230 :IHFHL 2dy3A 155 :MFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLG 2dy3A 190 :ECPVNHVC T0547 291 :TLREYA 2dy3A 198 :NSPAFL T0547 306 :IAEQKK 2dy3A 204 :TRSDLH T0547 315 :PDI 2dy3A 210 :MEM T0547 319 :IESGRFVAA 2dy3A 213 :VRPGLAFYG T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKK 2dy3A 266 :GFVAVVPA T0547 354 :QNPKLIDEL 2dy3A 275 :YADGMPRHA T0547 372 :SNALE 2dy3A 284 :QGKFS T0547 377 :YLHDSIDHLESILTLFDL 2dy3A 294 :LDYPQVGRVCMDQFVISL T0547 398 :DLQ 2dy3A 313 :DNP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERY 2dy3A 317 :GVEAGAKAVIFGENGHDATDFAERLDTINYEVVCRPTGRT Number of specific fragments extracted= 26 number of extra gaps= 0 total=807 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_928135044.pdb -s /var/tmp/to_scwrl_928135044.seq -o /var/tmp/from_scwrl_928135044.pdb > /var/tmp/scwrl_928135044.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_928135044.pdb Number of alignments=34 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bd0A/T0547-1bd0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1bd0A/T0547-1bd0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1bd0A read from 1bd0A/T0547-1bd0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1bd0A in training set T0547 42 :GYKGPL 1bd0A 3 :DFHRDT T0547 48 :LLRFPHLIQKQIENIYGNFN 1bd0A 10 :AEVDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKV 1bd0A 30 :DDTHIMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1bd0A 45 :HGDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1bd0A 60 :SRLAVAFLDEALALREKGIE T0547 127 :APITVNGFKDRELINIGF 1bd0A 80 :APILVLGASRPADAALAA T0547 148 :EMG 1bd0A 98 :QQR T0547 153 :ITLTIEGLNELEAIIDIAK 1bd0A 101 :IALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLH 1bd0A 120 :GPFPIHFHLKMDTG T0547 190 :GV 1bd0A 134 :MG T0547 203 :KFGL 1bd0A 136 :RLGV T0547 207 :TSTELIEAVNLLKENKLLEQFT 1bd0A 141 :DEEETKRIVALIERHPHFVLEG T0547 230 :IHFHLG 1bd0A 163 :LYTHFA T0547 236 :SQITEIHPLKKALNEAGNIYTEL 1bd0A 170 :ADEVNTDYFSYQYTRFLHMLEWL T0547 262 :G 1bd0A 193 :P T0547 264 :KNLKAINLGGGLAV 1bd0A 194 :SRPPLVHCANSAAS T0547 310 :KK 1bd0A 211 :PD T0547 313 :LEPDI 1bd0A 213 :RTFNM T0547 319 :IESGRFVAA 1bd0A 218 :VRFGIAMYG T0547 328 :NHAVLIAPVLELFSQE 1bd0A 243 :EAFSLHSRLVHVKKLQ T0547 344 :YAE 1bd0A 274 :EEW T0547 348 :KLILKK 1bd0A 277 :IGTIPI T0547 354 :QNPKLIDELY 1bd0A 284 :YADGWLRRLQ T0547 374 :ALE 1bd0A 294 :HFH T0547 377 :YLHDSIDHLES 1bd0A 302 :QKAPIVGRICM T0547 390 :TLFDLGY 1bd0A 313 :DQCMIRL T0547 399 :LQDRSNAEILTHLI 1bd0A 320 :PGPLPVGTKVTLIG T0547 413 :TKKAILLLGD 1bd0A 342 :IDDVARHLET T0547 428 :DLLAIQDEVQERYLVNFSL 1bd0A 352 :INYEVPCTISYRVPRIFFR T0547 543 :KGYEVEGI 1bd0A 371 :HKRIMEVR Number of specific fragments extracted= 30 number of extra gaps= 0 total=837 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1240085747.pdb -s /var/tmp/to_scwrl_1240085747.seq -o /var/tmp/from_scwrl_1240085747.pdb > /var/tmp/scwrl_1240085747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1240085747.pdb Number of alignments=35 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3hurA/T0547-3hurA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 3hurA expands to /projects/compbio/data/pdb/3hur.pdb.gz 3hurA:# T0547 read from 3hurA/T0547-3hurA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 3hurA read from 3hurA/T0547-3hurA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 3hurA to template set # found chain 3hurA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 42 :GYKGPL 3hurA 4 :AIHRPT T0547 48 :LLRFPHLIQKQIENIYGNF 3hurA 11 :VSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKV 3hurA 30 :KAKKVYAVLKA T0547 88 :NQYPGFVKNLVKLGK 3hurA 45 :LGAIPLAKAFQETAS T0547 105 :NYGLEAGSKAELLLAMAYNNE 3hurA 60 :ADALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRELINIGF 3hurA 87 :GAWDYSDLKLFI T0547 148 :EMG 3hurA 99 :DHD T0547 153 :ITLTIEGLNELE 3hurA 102 :IVITIPSLAWLQ T0547 174 :FKPKPNIGLRV 3hurA 118 :FEGTLKVSLAI T0547 187 :HSAGV 3hurA 129 :DTGMT T0547 203 :KF 3hurA 134 :RI T0547 207 :TSTELIEAVNLLKENKLLEQFT 3hurA 139 :KADEISAAKKIIDKNPQLDLFS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRK 3hurA 161 :VYTHFATADEAGEKSKAYFEEQLRRWQELTI T0547 261 :MGA 3hurA 193 :QGF T0547 265 :NLKAINLGGGLAV 3hurA 196 :DPSLFSMANSATC T0547 314 :EPDIF 3hurA 218 :SFAAI T0547 320 :ESGRFVAAN 3hurA 223 :RPGQLISGV T0547 329 :HAVLIAPVLELFSQE 3hurA 249 :IFSVCSEIADVRFVK T0547 344 :YAENKLILKK 3hurA 278 :EDGYVATLPF T0547 354 :QNPKLIDEL 3hurA 289 :YNDGWLRRM T0547 374 :AL 3hurA 299 :KS T0547 377 :YLHDSIDHLES 3hurA 307 :KRMPIIGRITM T0547 390 :TLFDLGY 3hurA 318 :DQTMVKL T0547 399 :LQDRSNAEILTHLITKKA 3hurA 325 :DRKYPIGTRVTLIGKDGG Number of specific fragments extracted= 25 number of extra gaps= 2 total=862 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1940243640.pdb -s /var/tmp/to_scwrl_1940243640.seq -o /var/tmp/from_scwrl_1940243640.pdb > /var/tmp/scwrl_1940243640.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1940243640.pdb Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3kw3A/T0547-3kw3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 3kw3A expands to /projects/compbio/data/pdb/3kw3.pdb.gz 3kw3A:Bad short name: N1 for alphabet: pdb_atoms Bad short name: C2 for alphabet: pdb_atoms Bad short name: C2' for alphabet: pdb_atoms Bad short name: C3 for alphabet: pdb_atoms Bad short name: O3 for alphabet: pdb_atoms Bad short name: C4 for alphabet: pdb_atoms Bad short name: C4' for alphabet: pdb_atoms Bad short name: C5 for alphabet: pdb_atoms Bad short name: C6 for alphabet: pdb_atoms Bad short name: C5' for alphabet: pdb_atoms Bad short name: OP4 for alphabet: pdb_atoms Bad short name: P for alphabet: pdb_atoms Bad short name: OP1 for alphabet: pdb_atoms Bad short name: OP2 for alphabet: pdb_atoms Bad short name: OP3 for alphabet: pdb_atoms Skipped atom 1176, because occupancy 0.500 <= existing 0.500 in 3kw3A Skipped atom 1180, because occupancy 0.500 <= existing 0.500 in 3kw3A Skipped atom 1182, because occupancy 0.500 <= existing 0.500 in 3kw3A Skipped atom 1184, because occupancy 0.500 <= existing 0.500 in 3kw3A Skipped atom 1186, because occupancy 0.500 <= existing 0.500 in 3kw3A Skipped atom 1188, because occupancy 0.500 <= existing 0.500 in 3kw3A # T0547 read from 3kw3A/T0547-3kw3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 3kw3A read from 3kw3A/T0547-3kw3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 3kw3A to template set # found chain 3kw3A in template set Warning: unaligning (T0547)G42 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3kw3A 14 :PATAIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQYPGFVKNLVKLGK 3kw3A 53 :LGAHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFPHKAEEFVA T0547 148 :EMGHN 3kw3A 107 :QSGII T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHS 3kw3A 130 :KNKKFPAIIQVDTNM T0547 191 :V 3kw3A 145 :S T0547 203 :KFGLTSTELIEAVN 3kw3A 146 :RLGLDKKELQKLIK T0547 220 :ENKLLEQFT 3kw3A 163 :IFEKAEIKY T0547 230 :IHFHLG 3kw3A 172 :ILSHLA T0547 236 :SQITEIHPLKKALNEAGNIYTE 3kw3A 179 :GEDASHSSNNKQLAAFKRVLAQ T0547 263 :AKNLKAI 3kw3A 201 :LPTCKVS T0547 275 :LAV 3kw3A 208 :FAN T0547 278 :EYSQFKNEK 3kw3A 236 :PHGKHPTPL T0547 327 :ANHAVLIAPVLELFS 3kw3A 245 :KAVVKVEAQVLQSRF T0547 345 :AE 3kw3A 278 :ST T0547 348 :KLILKK 3kw3A 280 :LATISI T0547 354 :QNPKLIDELYDLYKSIK 3kw3A 287 :YADGWPRILSNKGTVYF T0547 375 :LEYLHDSIDHLESILTLFDLGYV 3kw3A 304 :NGHKLPIVGHISMDSIIVDATDL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPA 3kw3A 327 :DKKPQRGDWVELIGPHQPLEKVSTDTNTI T0547 429 :LLAIQDEVQER 3kw3A 356 :PHEILTSLGKR Number of specific fragments extracted= 22 number of extra gaps= 1 total=884 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_257920163.pdb -s /var/tmp/to_scwrl_257920163.seq -o /var/tmp/from_scwrl_257920163.pdb > /var/tmp/scwrl_257920163.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_257920163.pdb Number of alignments=37 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xfcA/T0547-1xfcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1xfcA/T0547-1xfcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1xfcA read from 1xfcA/T0547-1xfcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKV 1xfcA 33 :GHAQLMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1xfcA 48 :HGATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWLHP T0547 135 :KDRELI 1xfcA 95 :DFGPAL T0547 148 :EMGH 1xfcA 101 :LADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTST 1xfcA 140 :RNGVGPA T0547 210 :ELIEAVNLLKENKLLEQFT 1xfcA 150 :AMLTALRQAMAEDAVRLRG T0547 230 :IHFH 1xfcA 169 :LMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLG 1xfcA 204 :RFEVAHLS T0547 291 :TLREYA 1xfcA 212 :NSSATM T0547 309 :Q 1xfcA 221 :D T0547 313 :LEPDI 1xfcA 222 :LTFDL T0547 319 :IESGRFVAA 1xfcA 227 :VRPGIAVYG T0547 328 :NHAVLIAPVLELFSQE 1xfcA 249 :PAMTVKCAVALVKSIR T0547 344 :YAENKLILKK 1xfcA 279 :RDTNLALLPI T0547 354 :QNPKLIDELY 1xfcA 290 :YADGVFRSLG T0547 373 :NALE 1xfcA 300 :GRLE T0547 377 :YLHDSIDHLESILTLFDLGYVDL 1xfcA 309 :RRCPGVGRICMDQFMVDLGPGPL T0547 401 :DRSNAEILTHLITKKAILLL 1xfcA 332 :DVAEGDEAILFGPGIRGEPT T0547 516 :VGAYQEVLG 1xfcA 352 :AQDWADLVG T0547 554 :QSILDTL 1xfcA 361 :TIHYEVV Number of specific fragments extracted= 25 number of extra gaps= 1 total=909 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1278175996.pdb -s /var/tmp/to_scwrl_1278175996.seq -o /var/tmp/from_scwrl_1278175996.pdb > /var/tmp/scwrl_1278175996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1278175996.pdb Number of alignments=38 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vfsA/T0547-1vfsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1vfsA/T0547-1vfsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1vfsA read from 1vfsA/T0547-1vfsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 45 :GPLLLRFPHLIQKQIENIYGNF 1vfsA 7 :RVYAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLK 1vfsA 29 :PRSALMAVVK T0547 87 :VNQYPGFVKNLVKLGK 1vfsA 43 :GHGAVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGFKDRELINIGF 1vfsA 79 :GRIMCWLWTPGGPWREAI T0547 148 :EMGH 1vfsA 97 :ETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHSA 1vfsA 131 :DTGLG T0547 203 :KFGLTSTELIEAVNLLKEN 1vfsA 136 :RNGCQPADWAELVGAAVAA T0547 222 :KLLEQFT 1vfsA 158 :GTVQVTG T0547 230 :IHFHLG 1vfsA 165 :VWSHFA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 172 :ADEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAV 1vfsA 200 :DPEVRHIANSPAT T0547 305 :NIAEQKKD 1vfsA 213 :LTLPETHF T0547 316 :DIF 1vfsA 221 :DLV T0547 320 :ESGRFVAA 1vfsA 224 :RTGLAVYG T0547 328 :NHAVLIAPVLELFSQE 1vfsA 248 :PAMTLRASLALVKTVP T0547 344 :YAE 1vfsA 279 :ETH T0547 348 :KLILKK 1vfsA 282 :LALVPA T0547 354 :QNPKLIDELY 1vfsA 289 :YADGIPRNAS T0547 373 :NALE 1vfsA 299 :GRGP T0547 377 :YLHDSIDHLE 1vfsA 308 :KIRRAAGRIA T0547 394 :LGYV 1vfsA 318 :MDQF T0547 398 :DLQDRSNAEILTHLITKKA 1vfsA 326 :GEDLAEAGDEAVILGDAER T0547 417 :ILLLGDKQNPADLLAIQDEVQER 1vfsA 348 :TAEDWAQAAHTIAYEIVTRIGGR Number of specific fragments extracted= 26 number of extra gaps= 0 total=935 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_850331695.pdb -s /var/tmp/to_scwrl_850331695.seq -o /var/tmp/from_scwrl_850331695.pdb > /var/tmp/scwrl_850331695.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_850331695.pdb Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2vd8A/T0547-2vd8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2vd8A/T0547-2vd8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2vd8A read from 2vd8A/T0547-2vd8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :NQ 2vd8A 43 :NA T0547 90 :YPGF 2vd8A 49 :YVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2vd8A 62 :TRLAVAFLDEALVLRRAGIT T0547 127 :APITVNGFKDRELINIGF 2vd8A 82 :APILVLGPSPPRDINVAA T0547 148 :EMG 2vd8A 100 :END T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 190 :GV 2vd8A 136 :MG T0547 203 :KFGL 2vd8A 138 :RIGI T0547 207 :T 2vd8A 143 :E T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLEQFT 2vd8A 154 :LEGAPFLELEG T0547 230 :IHFHLG 2vd8A 165 :VYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYSQFKNEK 2vd8A 204 :VHTANSAATLRFQGITFN T0547 318 :FIESGRFVAA 2vd8A 222 :AVRIGIAMYG T0547 328 :NHAVLI 2vd8A 248 :PALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 345 :AENKLILKK 2vd8A 279 :EEWIATVAI T0547 354 :QNPKLIDELYD 2vd8A 289 :YADGWLRRLQG T0547 375 :LE 2vd8A 300 :FE T0547 379 :HDSIDHLES 2vd8A 309 :VPIVGRVTM T0547 395 :GYV 2vd8A 318 :DQF T0547 400 :QDRSNA 2vd8A 326 :CEVPLG T0547 409 :THLI 2vd8A 335 :TLIG T0547 413 :TKKAILLL 2vd8A 347 :ATEVAEYS T0547 426 :PADLLAIQDEVQERYLVNFSLF 2vd8A 355 :GTINYEIITTISFRVPRIFIRN T0547 451 :PDFWGLEQ 2vd8A 380 :VEVINYLN Number of specific fragments extracted= 38 number of extra gaps= 0 total=973 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_252485567.pdb -s /var/tmp/to_scwrl_252485567.seq -o /var/tmp/from_scwrl_252485567.pdb > /var/tmp/scwrl_252485567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_252485567.pdb Number of alignments=40 # command: # TryAllAlign to optimize cost = # ( 5.395 * align_constraints + 0.433 * phobic_fit + 5.237 * pred_nb11_back(9.650) + 3.487 * pred_bys_back + 3.032 * pred_alpha_back + 11.769 * wet6.5(6.500, /log(length)) + 2.146 * pred_n_notor_back + 59.013 * noncontact_bonus + 1.605 * break + 2.341 * pred_o_sep_back + 0.619 * sidechain_clashes + 2.571 * bystroff + 0.143 * contact(8.000) + 0.939 * alpha_prev + 0.741 * pred_n_sep_back + 0.319 * ehl2_constraints + 0.198 * deep_knot + 0.010 * cb14(14.000) ) # Will try all 40 alignments, # shrinking each end by up to 0.000*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 41: T0547.try1-al1+T0547-1twiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m:1twiA at pool[36] 2.697 cost/residue, 3872 clashes 0.229 breaks # command:# naming current conformation T0547.try1-al1A # command:# reading script from file T0547.t2k.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hkvA/T0547-1hkvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1hkvA expands to /projects/compbio/data/pdb/1hkv.pdb.gz 1hkvA:# T0547 read from 1hkvA/T0547-1hkvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hkvA read from 1hkvA/T0547-1hkvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1hkvA to template set # found chain 1hkvA in template set Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)N18 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 14 :FI 1hkvA 16 :TT T0547 19 :GKVCIN 1hkvA 21 :VGVVCI T0547 27 :KKPAIIDIV 1hkvA 27 :AGIPLTQLA T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNF 1hkvA 36 :QEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 62 :GSGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1hkvA 152 :AGIVQDVLVRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 1hkvA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 1hkvA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 1hkvA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGG 1hkvA 247 :TAQIATVDLGGG T0547 277 :VEYSQFKNEKS 1hkvA 261 :ISYLPSDDPPP T0547 292 :LREYANDVVFILKNIA 1hkvA 272 :IAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 1hkvA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 1hkvA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1hkvA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWG 1hkvA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLS Number of specific fragments extracted= 19 number of extra gaps= 5 total=992 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1371818873.pdb -s /var/tmp/to_scwrl_1371818873.seq -o /var/tmp/from_scwrl_1371818873.pdb > /var/tmp/scwrl_1371818873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1371818873.pdb Number of alignments=41 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2o0tA/T0547-2o0tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2o0tA/T0547-2o0tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2o0tA read from 2o0tA/T0547-2o0tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 T0547 22 :CI 2o0tA 16 :TT T0547 26 :EKK 2o0tA 20 :EVG T0547 29 :PAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2o0tA 24 :VCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVG T0547 154 :TLTIEGLNELEAIIDIAKE 2o0tA 133 :HIVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGI 2o0tA 160 :VRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 2o0tA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 2o0tA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 2o0tA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 2o0tA 247 :TAQIATVDLGGGLGISYLPSDDPPP T0547 292 :LREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2o0tA 272 :IAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 2o0tA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 2o0tA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGL 2o0tA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSL Number of specific fragments extracted= 18 number of extra gaps= 3 total=1010 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_803289654.pdb -s /var/tmp/to_scwrl_803289654.seq -o /var/tmp/from_scwrl_803289654.pdb > /var/tmp/scwrl_803289654.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_803289654.pdb Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2p3eA/T0547-2p3eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2p3eA/T0547-2p3eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2p3eA read from 2p3eA/T0547-2p3eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2p3eA 11 :LEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 57 :DALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEIL T0547 154 :TLTIEGLNELEAIIDIAKE 2p3eA 126 :MFNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENK 2p3eA 175 :KFGVDIREAQKEYEYASKLE T0547 224 :LEQFTMI 2p3eA 195 :NLEIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKM 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQK T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2p3eA 233 :GFDIKYLDIGGGLGIKYKPEDKEP T0547 291 :TLREYANDV 2p3eA 257 :APQDLADLL T0547 309 :Q 2p3eA 266 :K T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNAL 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVDLQDR 2p3eA 340 :VADIVGPICETGDFLALDREIE T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2p3eA 363 :VQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDYIVEPSL Number of specific fragments extracted= 14 number of extra gaps= 1 total=1024 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_2050102844.pdb -s /var/tmp/to_scwrl_2050102844.seq -o /var/tmp/from_scwrl_2050102844.pdb > /var/tmp/scwrl_2050102844.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2050102844.pdb Number of alignments=43 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2pljA/T0547-2pljA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2pljA/T0547-2pljA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2pljA read from 2pljA/T0547-2pljA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2pljA in template set Warning: unaligning (T0547)E26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 T0547 27 :KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2pljA 17 :VLSAEEIHLIEASVEQFGAPLLLLDCDVIRQQYRALKNALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2pljA 58 :NVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCN T0547 154 :TLTIEGLNELEA 2pljA 127 :VFVVDNLNELEK T0547 170 :AKE 2pljA 139 :FKA T0547 174 :FKPKPNIGLRVR 2pljA 142 :YRDDVELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEK 2pljA 186 :IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPI T0547 293 :REYANDVVFIL 2pljA 248 :DQFCAPINEAL T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELY 2pljA 259 :SLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMF T0547 367 :KSIKPS 2pljA 314 :DDARYP T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2pljA 323 :IKQGGELIPSVLSGPTCDSVDVIAENILLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLA 2pljA 354 :LNNGDLVIGRTMGAYTSATATDFNFFKRA Number of specific fragments extracted= 13 number of extra gaps= 0 total=1037 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_627335956.pdb -s /var/tmp/to_scwrl_627335956.seq -o /var/tmp/from_scwrl_627335956.pdb > /var/tmp/scwrl_627335956.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_627335956.pdb Number of alignments=44 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2j66A/T0547-2j66A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2j66A/T0547-2j66A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2j66A read from 2j66A/T0547-2j66A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2j66A in training set Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)F460 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQSGIY T0547 154 :TLTIEGLNELEAIIDIAKE 2j66A 110 :CIIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQ T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 178 :FTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 284 :NEKS 2j66A 238 :KALD T0547 292 :LREYANDVVFILKNIA 2j66A 242 :IGKITRTVSDYVQEAR T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 2j66A 258 :DTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAA T0547 380 :DSIDHLESILTLFDLGYVDLQDR 2j66A 337 :EKVTIAGPLCTPEDCLGKDVHVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2j66A 361 :LYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 12 number of extra gaps= 1 total=1049 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_275680133.pdb -s /var/tmp/to_scwrl_275680133.seq -o /var/tmp/from_scwrl_275680133.pdb > /var/tmp/scwrl_275680133.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_275680133.pdb Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1twiA/T0547-1twiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1twiA/T0547-1twiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1twiA read from 1twiA/T0547-1twiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1twiA in template set T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1twiA 75 :EFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1twiA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1twiA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1twiA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1twiA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1twiA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 1twiA 253 :GIEIEDVNLGGGLGIPYYKDKQIPT T0547 292 :LREYANDVVFILKNI 1twiA 278 :QKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1twiA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC T0547 376 :E 1twiA 360 :N T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1twiA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGL 1twiA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAK Number of specific fragments extracted= 14 number of extra gaps= 0 total=1063 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1340151539.pdb -s /var/tmp/to_scwrl_1340151539.seq -o /var/tmp/from_scwrl_1340151539.pdb > /var/tmp/scwrl_1340151539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1340151539.pdb Number of alignments=46 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tufA/T0547-1tufA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1tufA/T0547-1tufA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tufA read from 1tufA/T0547-1tufA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKE 1tufA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEE T0547 75 :YKGGFNAVYP 1tufA 72 :TGKEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1tufA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1tufA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1tufA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1tufA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1tufA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 1tufA 253 :GIEIEDVNLGGGLGIPYYKDKQIPT T0547 292 :LREYANDVVFILKNI 1tufA 278 :QKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC T0547 374 :ALE 1tufA 358 :VKN T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1tufA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGL 1tufA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAK T0547 469 :D 1tufA 441 :D Number of specific fragments extracted= 16 number of extra gaps= 0 total=1079 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_546571748.pdb -s /var/tmp/to_scwrl_546571748.seq -o /var/tmp/from_scwrl_546571748.pdb > /var/tmp/scwrl_546571748.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_546571748.pdb Number of alignments=47 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knwA/T0547-1knwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1knwA/T0547-1knwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knwA read from 1knwA/T0547-1knwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1knwA in template set Warning: unaligning (T0547)T473 because last residue in template chain is (1knwA)H422 T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIEN 1knwA 7 :STDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAA T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLG 1knwA 43 :LKQFDVVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1knwA 70 :VKVDSVSLGEIERALAAGYNPQ T0547 128 :PITVNGFKDRELINIGFIAAEM 1knwA 96 :DIVFTADVIDQATLERVSELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGI 1knwA 137 :HRVWLRVNPGFGHGHS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 154 :KTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 225 :EQFTMIHFHLGSQI 1knwA 183 :LQLVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 1knwA 216 :GQDLQAISAGGGLSVPYQQGEEAVD T0547 292 :LREYANDVVFILKNIAEQKKD 1knwA 241 :TEHYYGLWNAAREQIARHLGH T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1knwA 262 :PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1knwA 326 :SLEHAPTVETVVAGPLCESGDVFTQQEGGN T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFW 1knwA 364 :VKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELL T0547 467 :RLDEEP 1knwA 416 :ALELLH Number of specific fragments extracted= 15 number of extra gaps= 0 total=1094 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1195600064.pdb -s /var/tmp/to_scwrl_1195600064.seq -o /var/tmp/from_scwrl_1195600064.pdb > /var/tmp/scwrl_1195600064.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1195600064.pdb Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2yxxA/T0547-2yxxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2yxxA/T0547-2yxxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2yxxA read from 2yxxA/T0547-2yxxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2yxxA in template set T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 4 :LRKVAEIHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVR T0547 154 :TLTIEGLNELEAIIDI 2yxxA 107 :IVNVDSFEEMEIWREL T0547 174 :FKPKPNIGLRVRLHSAGVGI 2yxxA 123 :NPEGVEYFIRVNPEVDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLL 2yxxA 144 :HISTGLKKHKFGIPLEDLDSFMERF T0547 221 :NK 2yxxA 169 :RS T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 171 :MNIRGLHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFKNEKSR 2yxxA 205 :GFEEINIGGGWGINYSGEELDLSS T0547 295 :Y 2yxxA 229 :Y T0547 304 :KNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2yxxA 230 :REKVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVL T0547 375 :LEYLHDSIDHLESILTLFDLGYVDLQDR 2yxxA 300 :KQGKEMRADVVGPLCESGDVIAYDRELP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGL 2yxxA 329 :VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFK Number of specific fragments extracted= 13 number of extra gaps= 0 total=1107 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_51051972.pdb -s /var/tmp/to_scwrl_51051972.seq -o /var/tmp/from_scwrl_51051972.pdb > /var/tmp/scwrl_51051972.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_51051972.pdb Number of alignments=49 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2qghA/T0547-2qghA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2qghA/T0547-2qghA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2qghA read from 2qghA/T0547-2qghA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)N541 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)K543 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFK T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 36 :GRKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNIL T0547 154 :TLTIEGLNELEAIIDIAKE 2qghA 107 :FLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGI 2qghA 126 :LGIKARISIRINPNIDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2qghA 147 :YISTGLKENKFGVGEKEALEMFLWAKKSA T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2qghA 176 :FLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIAL T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2qghA 214 :GIDLRFFDVGGGIGVSYENEETIK T0547 292 :LREYANDVV 2qghA 238 :LYDYAQGIL T0547 308 :EQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 247 :NALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 2qghA 284 :KRFVIVDAGMNDFLRPSLYHAKHAIRVI T0547 373 :N 2qghA 313 :P T0547 379 :HDSIDHLESILTLFDLGYVDLQDR 2qghA 319 :ISPCDVVGPVCESSDTFLKDAHLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLA 2qghA 344 :LEPGDKIAIEKVGAYGSSMASQYNSRPKL T0547 535 :EAIISI 2qghA 373 :LELALE T0547 544 :GYEVEGIIEAQS 2qghA 382 :IRVIRKREALED Number of specific fragments extracted= 16 number of extra gaps= 0 total=1123 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1132116827.pdb -s /var/tmp/to_scwrl_1132116827.seq -o /var/tmp/from_scwrl_1132116827.pdb > /var/tmp/scwrl_1132116827.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1132116827.pdb Number of alignments=50 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1d7kA/T0547-1d7kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1d7kA expands to /projects/compbio/data/pdb/1d7k.pdb.gz 1d7kA:Bad short name: N1 for alphabet: pdb_atoms Bad short name: C2 for alphabet: pdb_atoms Bad short name: C2' for alphabet: pdb_atoms Bad short name: C3 for alphabet: pdb_atoms Bad short name: O3 for alphabet: pdb_atoms Bad short name: C4 for alphabet: pdb_atoms Bad short name: C4' for alphabet: pdb_atoms Bad short name: C5 for alphabet: pdb_atoms Bad short name: C6 for alphabet: pdb_atoms Bad short name: C5' for alphabet: pdb_atoms Bad short name: OP4 for alphabet: pdb_atoms Bad short name: P for alphabet: pdb_atoms Bad short name: OP1 for alphabet: pdb_atoms Bad short name: OP2 for alphabet: pdb_atoms Bad short name: OP3 for alphabet: pdb_atoms # T0547 read from 1d7kA/T0547-1d7kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1d7kA read from 1d7kA/T0547-1d7kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1d7kA to template set # found chain 1d7kA in template set Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNFN 1d7kA 43 :ADLGDILKKHLRWLKALP T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQ T0547 154 :TLTIEGLNELEAI 1d7kA 130 :MMTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 225 :EQFTMIHFHL 1d7kA 189 :IDVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAVEYSQ 1d7kA 228 :SMYLLDIGGGFPGSEDV T0547 289 :NYTLREYANDVVFILKNIA 1d7kA 245 :KLKFEEITGVINPALDKYF T0547 310 :K 1d7kA 264 :P T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 344 :YAENKLI 1d7kA 312 :QTFMYYV T0547 353 :KQNPKLIDELY 1d7kA 321 :GVYGSFNCILY T0547 367 :KSIKPS 1d7kA 332 :DHAHVK T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 400 :QDR 1d7kA 371 :DLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPA 1d7kA 375 :MHVGDWMLFENMGAYTVAAASTFNG T0547 430 :L 1d7kA 402 :R T0547 475 :SASIWD 1d7kA 404 :TIYYVM T0547 572 :DILNERISNS 1d7kA 411 :GPAWQLMQQF Number of specific fragments extracted= 31 number of extra gaps= 22 total=1154 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1616387587.pdb -s /var/tmp/to_scwrl_1616387587.seq -o /var/tmp/from_scwrl_1616387587.pdb > /var/tmp/scwrl_1616387587.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1616387587.pdb Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2nvaA/T0547-2nvaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2nvaA/T0547-2nvaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2nvaA read from 2nvaA/T0547-2nvaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 34 :IVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2nvaA 6 :NNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 40 :RVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVD T0547 154 :TLTIEGLNELEAIIDIAKE 2nvaA 109 :IATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVG 2nvaA 128 :CKMILRIRCDDPNAT T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 2nvaA 143 :VQLGNKFGANEDEIRHLLEYAKQLD T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2nvaA 168 :IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISV T0547 263 :AKNLKAINLGGGLAVEY 2nvaA 205 :GHKPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 294 :EYANDVVFILKN 2nvaA 229 :YMSDYINDAIKD T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELY 2nvaA 241 :FFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIF T0547 367 :KSIKPS 2nvaA 296 :EKSVPT T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2nvaA 308 :VPDDEEYVPSVLYGCTCDGVDVINHNVALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLL 2nvaA 339 :LHIGDWVYFPSWGAYTNVLTTSFNGFGE Number of specific fragments extracted= 14 number of extra gaps= 0 total=1168 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1976020190.pdb -s /var/tmp/to_scwrl_1976020190.seq -o /var/tmp/from_scwrl_1976020190.pdb > /var/tmp/scwrl_1976020190.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1976020190.pdb Number of alignments=52 # Reading fragments from alignment file # Attempting to read fragment alignments from file 7odcA/T0547-7odcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 7odcA/T0547-7odcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 7odcA read from 7odcA/T0547-7odcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 16 :IKNGKVCINYEKKPAIIDIVKELR 7odcA 5 :TKDEFDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 7odcA 37 :KDAFYVADLGDILKKHLRWLKALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 7odcA 61 :RVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 7odcA 189 :IDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEV T0547 263 :AKNLKAINLGGGLAVEYSQ 7odcA 226 :GFSMHLLDIGGGFPGSEDT T0547 289 :NYTLREYANDVVFILKNIAE 7odcA 245 :KLKFEEITSVINPALDKYFP T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 265 :SDSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 344 :YAENKLILKKQNPKLIDELY 7odcA 312 :QTFMYYVNDGVYGSFNCILY T0547 368 :SIKPS 7odcA 333 :HAHVK T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVERCNLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLL 7odcA 375 :MHVGDWMLFENMGAYTVAAASTFNGFQR T0547 474 :RSASIWDI 7odcA 403 :PNIYYVMS T0547 557 :LDTLEDL 7odcA 411 :RPMWQLM Number of specific fragments extracted= 17 number of extra gaps= 0 total=1185 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_2138713829.pdb -s /var/tmp/to_scwrl_2138713829.seq -o /var/tmp/from_scwrl_2138713829.pdb > /var/tmp/scwrl_2138713829.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2138713829.pdb Number of alignments=53 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3llxA/T0547-3llxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 3llxA/T0547-3llxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 3llxA read from 3llxA/T0547-3llxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 9 :AHPDTPYLLIDEAKLKSNINYLKQRVESL T0547 78 :GFN 3llxA 38 :GSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNL 3llxA 48 :LRTLEAAGYL T0547 101 :GKDYNYGLEAGSKAELLLAMAYNN 3llxA 58 :LDSKSAPATVSTLAEAEAYAKAGY T0547 127 :APITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 82 :TDLLYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSAGVG 3llxA 128 :FGQDFSVFIEIDSDDHRGG T0547 206 :LTS 3llxA 147 :IKP T0547 209 :TELIEAVNLL 3llxA 152 :SKLLTIAKTL T0547 224 :LEQFTMIHFHLG 3llxA 162 :GEHFTGLMTHAG T0547 236 :SQITEIHPLKKALNEAGNIYTELRKM 3llxA 176 :YACNTEQGLKNFAKQECDAVRIARNN T0547 262 :GAKNLKAIN 3llxA 205 :AGIHCAITS T0547 291 :TLREYA 3llxA 241 :DLVMKN T0547 310 :KKDLEP 3llxA 247 :IGVCDF T0547 328 :NHAVLIAPVLE 3llxA 255 :IAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 349 :LILKK 3llxA 274 :LTDSG T0547 363 :YDLYKSIKPS 3llxA 279 :WMALSRDSGT T0547 397 :VDLQDR 3llxA 327 :DAYQLE T0547 403 :SNAEILTHLITKKAILLLGD 3llxA 334 :FPVGHQLRIMPNHACATAAM T0547 533 :PTEAIISINEKGYEVEGIIEA 3llxA 354 :HPVYHVLMSDGSHNTWQRITG Number of specific fragments extracted= 21 number of extra gaps= 4 total=1206 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1101042051.pdb -s /var/tmp/to_scwrl_1101042051.seq -o /var/tmp/from_scwrl_1101042051.pdb > /var/tmp/scwrl_1101042051.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1101042051.pdb Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xfcA/T0547-1xfcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1xfcA/T0547-1xfcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1xfcA read from 1xfcA/T0547-1xfcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNFN 1xfcA 12 :AEAMVDLGAIEHNVRVLREHAG T0547 78 :GFNAVYPLKVNQY 1xfcA 34 :HAQLMAVVKADGY T0547 91 :PGFVKNLVKLGK 1xfcA 51 :TRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPIT 1xfcA 63 :AELGVATVDEALALRADGITAPVLA T0547 132 :NGFKD 1xfcA 88 :WLHPP T0547 142 :IGFIAAEM 1xfcA 97 :GPALLADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 190 :GVG 1xfcA 140 :RNG T0547 206 :LTS 1xfcA 143 :VGP T0547 209 :TELIEAVNLLKENK 1xfcA 149 :PAMLTALRQAMAED T0547 224 :LEQFTMIHFH 1xfcA 163 :AVRLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKM 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQ T0547 263 :AKNLKAINLG 1xfcA 202 :GVRFEVAHLS T0547 287 :S 1xfcA 212 :N T0547 292 :LREY 1xfcA 213 :SSAT T0547 303 :L 1xfcA 217 :M T0547 309 :QKKDLEPDIFI 1xfcA 218 :ARPDLTFDLVR T0547 321 :SGRFVAA 1xfcA 229 :PGIAVYG T0547 328 :NHAVLIAPVLELFSQEYAENK 1xfcA 249 :PAMTVKCAVALVKSIRAGEGV T0547 396 :YVDLQ 1xfcA 270 :SYGHT T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLL 1xfcA 277 :APRDTNLALLPIGYADGVFRSLGGRLEV T0547 438 :ERYLVNFSLFQSMPD 1xfcA 307 :NGRRCPGVGRICMDQ T0547 477 :SIWDIT 1xfcA 322 :FMVDLG T0547 497 :LFLHDVDVE 1xfcA 328 :PGPLDVAEG T0547 534 :TEAIISINEKG 1xfcA 337 :DEAILFGPGIR T0547 555 :SILDTLEDLDYD 1xfcA 351 :TAQDWADLVGTI Number of specific fragments extracted= 27 number of extra gaps= 1 total=1233 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1050099910.pdb -s /var/tmp/to_scwrl_1050099910.seq -o /var/tmp/from_scwrl_1050099910.pdb > /var/tmp/scwrl_1050099910.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1050099910.pdb Number of alignments=55 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vfsA/T0547-1vfsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1vfsA/T0547-1vfsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1vfsA read from 1vfsA/T0547-1vfsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 1vfsA 6 :TRVYAEIDLDAVRANVRALRARAP T0547 78 :GFNAVYPLKVNQ 1vfsA 30 :RSALMAVVKSNA T0547 90 :YPGFVKNLVKLGK 1vfsA 46 :AVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 1vfsA 59 :AWLGTATPEEALELRAAGIQGRIMCWLWTPG T0547 141 :NIGFIAAEM 1vfsA 92 :WREAIETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHSA 1vfsA 131 :DTGLG T0547 203 :KFGLTSTELIEAVNLLKEN 1vfsA 136 :RNGCQPADWAELVGAAVAA T0547 222 :K 1vfsA 158 :G T0547 224 :LEQFTMIHFHLGS 1vfsA 159 :TVQVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKE T0547 263 :AKNLKAINLGG 1vfsA 198 :GVDPEVRHIAN T0547 304 :KNIAEQKKDLEPDIFI 1vfsA 209 :SPATLTLPETHFDLVR T0547 321 :SGRFVAA 1vfsA 225 :TGLAVYG T0547 328 :NHAVLIAPVLELFSQEYAENK 1vfsA 248 :PAMTLRASLALVKTVPAGHGV T0547 396 :YVDLQ 1vfsA 269 :SYGHH T0547 403 :SNAEILTHLITKK 1vfsA 276 :TESETHLALVPAG T0547 421 :GDKQNPAD 1vfsA 289 :YADGIPRN T0547 436 :VQERYLVNFS 1vfsA 297 :ASGRGPVLVA T0547 457 :EQNFPI 1vfsA 307 :GKIRRA T0547 530 :FT 1vfsA 313 :AG T0547 532 :HPTEAIISINE 1vfsA 317 :AMDQFVVDLGE T0547 543 :KGYEVEGIIEAQS 1vfsA 332 :AGDEAVILGDAER T0547 556 :ILDTLEDLDYD 1vfsA 349 :AEDWAQAAHTI Number of specific fragments extracted= 25 number of extra gaps= 0 total=1258 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_768855217.pdb -s /var/tmp/to_scwrl_768855217.seq -o /var/tmp/from_scwrl_768855217.pdb > /var/tmp/scwrl_768855217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_768855217.pdb Number of alignments=56 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3gwqA/T0547-3gwqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 3gwqA/T0547-3gwqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 3gwqA read from 3gwqA/T0547-3gwqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 39 :LNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 127 :APITVNGFKDRELINIGFIAAEMGH 3gwqA 115 :RVLMANQLVGRRNMMMVAELLSDPE T0547 152 :NITLTIEGLNELEAIIDIAKE 3gwqA 141 :EFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHSAGV 3gwqA 162 :VNKQLQVLLELGVPGGRT T0547 205 :GLTS 3gwqA 180 :GVRD T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHLG 3gwqA 185 :AQRNAVLEAITRYPDTLKLAGVELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAKNLK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERFARA T0547 268 :AINLGGGLAV 3gwqA 244 :AVLSGAGSAW T0547 292 :LREYANDVVFI 3gwqA 254 :YDVVAEEFVKA T0547 307 :A 3gwqA 265 :S T0547 311 :KDLEPDIFIESGRFV 3gwqA 266 :ETGKVEVVLRPGCYL T0547 328 :NHAVLIA 3gwqA 310 :PALQLWA T0547 337 :LELFSQ 3gwqA 319 :QSIPEP T0547 345 :AENKLILKKQN 3gwqA 344 :EPARHYRPGNE T0547 373 :NALEYLHDSID 3gwqA 361 :ASEGWEIFGLM T0547 393 :DLGYVDLQDR 3gwqA 373 :QHAYLRIPAG T0547 403 :SNAEILTHLITKKAILLLGD 3gwqA 385 :LKVGDMIAFDISHPCLTFDK T0547 460 :F 3gwqA 405 :W T0547 508 :NY 3gwqA 406 :RQ T0547 538 :ISINEKGYEVEGIIE 3gwqA 408 :VLVVDPAYRVTEVIE Number of specific fragments extracted= 22 number of extra gaps= 1 total=1280 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1130298154.pdb -s /var/tmp/to_scwrl_1130298154.seq -o /var/tmp/from_scwrl_1130298154.pdb > /var/tmp/scwrl_1130298154.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1130298154.pdb Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3e6eA/T0547-3e6eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 3e6eA expands to /projects/compbio/data/pdb/3e6e.pdb.gz 3e6eA:# T0547 read from 3e6eA/T0547-3e6eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 3e6eA read from 3e6eA/T0547-3e6eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 3e6eA to template set # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)E542 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 3e6eA 7 :RPTRLHIDTQAITENVQKECQRL T0547 76 :KGGFNAVYPLKVNQ 3e6eA 30 :PEGTALFAVVKANG T0547 90 :YPGFVKNLVKLGK 3e6eA 48 :AVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILILSVVDLAY T0547 141 :NIGFIAAEM 3e6eA 94 :VPLLIQYDL T0547 154 :TLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 103 :SVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGVGI 3e6eA 137 :MGRIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 225 :EQFTMIHFHLGSQI 3e6eA 161 :FLWEGIFTHFSTAD T0547 239 :TEIHPL 3e6eA 176 :IDTSYF T0547 249 :NEAGNIYTELRKMGAKNLKAINLGG 3e6eA 182 :EKQAGRFKAVLAVLEELPRYVHVSN T0547 292 :LREYA 3e6eA 207 :SATAL T0547 309 :QKKDLEPDIFI 3e6eA 212 :WHPDVPGNMIR T0547 321 :SGRFVAA 3e6eA 223 :YGVAMYG T0547 328 :NHAVLIAPVLELFSQEYAENK 3e6eA 245 :PALRLTSELIHVKRLAAGEGI T0547 351 :LKKQ 3e6eA 266 :GYGE T0547 402 :R 3e6eA 270 :T T0547 403 :SNAEILTHLITKK 3e6eA 273 :TEAEEWIGTVPIG T0547 421 :GDKQNPADLLAIQDEV 3e6eA 286 :YADGWLRHLQGFTVLV T0547 438 :ERYLVNFSLFQSMP 3e6eA 302 :NGKRCEIVGRVCMD T0547 535 :EAIISIN 3e6eA 316 :QCMIRLA T0547 543 :KG 3e6eA 327 :VG T0547 545 :YEVEGIIEAQ 3e6eA 331 :VTLVGKDGNE T0547 555 :SILDTLEDLDYD 3e6eA 343 :TLQMVAEKLETI Number of specific fragments extracted= 24 number of extra gaps= 3 total=1304 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_500357274.pdb -s /var/tmp/to_scwrl_500357274.seq -o /var/tmp/from_scwrl_500357274.pdb > /var/tmp/scwrl_500357274.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_500357274.pdb Number of alignments=58 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2dy3A/T0547-2dy3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2dy3A/T0547-2dy3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2dy3A read from 2dy3A/T0547-2dy3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)E240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)P371 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 45 :GPLLLRFPHLIQKQIENIYGNFN 2dy3A 3 :LLTTKIDLDAIAHNTRVLKQMAG T0547 78 :GFNAVYPLKVNQY 2dy3A 26 :PAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 2dy3A 55 :DAFGVATLAEAMQLRDIGISQEVLCWIWTPE T0547 141 :NIGFIAAEM 2dy3A 88 :FRAAIDRNI T0547 154 :TLTIEGLNELEAIID 2dy3A 97 :DLAVISPAHAKALIE T0547 173 :RFKPKPNIGLRVRLHSA 2dy3A 112 :TDAEHIRVSIKIDSGLH T0547 203 :KFGLTSTELIEAVNLLKENK 2dy3A 129 :RSGVDEQEWEGVFSALAAAP T0547 224 :LEQFTMIHFHL 2dy3A 149 :HIEVTGMFTHL T0547 241 :IHPLKKALNEAGN 2dy3A 170 :TDRQIIAFRRALA T0547 257 :ELRKM 2dy3A 183 :LARKH T0547 263 :AKNL 2dy3A 188 :GLEC T0547 285 :EKSRNYTLREYA 2dy3A 192 :PVNHVCNSPAFL T0547 309 :QKKDLEPDIFI 2dy3A 204 :TRSDLHMEMVR T0547 321 :SGRFVAA 2dy3A 215 :PGLAFYG T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 397 :VDLQDRSNAEILTHL 2dy3A 277 :DGMPRHAQGKFSVTI T0547 438 :ERYLVNFSLFQSMPD 2dy3A 292 :DGLDYPQVGRVCMDQ T0547 536 :AIISINE 2dy3A 307 :FVISLGD T0547 543 :KGYEVEGIIEAQ 2dy3A 320 :AGAKAVIFGENG T0547 555 :SILDTLEDLDYDIHAI 2dy3A 333 :DATDFAERLDTINYEV Number of specific fragments extracted= 21 number of extra gaps= 0 total=1325 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_787787281.pdb -s /var/tmp/to_scwrl_787787281.seq -o /var/tmp/from_scwrl_787787281.pdb > /var/tmp/scwrl_787787281.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_787787281.pdb Number of alignments=59 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bd0A/T0547-1bd0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1bd0A/T0547-1bd0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1bd0A read from 1bd0A/T0547-1bd0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1bd0A in training set T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1bd0A 6 :RDTWAEVDLDAIYDNVENLRRLL T0547 76 :KGGFNAVYPLKV 1bd0A 29 :PDDTHIMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1bd0A 45 :HGDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1bd0A 60 :SRLAVAFLDEALALREKGIEAPILVLGASRPAD T0547 141 :NIGFIAAEM 1bd0A 93 :AALAAQQRI T0547 154 :TLTIEGLNELEAIIDIAK 1bd0A 102 :ALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLHSAGVGI 1bd0A 120 :GPFPIHFHLKMDTGMGRLGV T0547 207 :TSTELIEAVNLLKENK 1bd0A 141 :DEEETKRIVALIERHP T0547 224 :LEQFTMIHFHLGSQI 1bd0A 157 :HFVLEGLYTHFATAD T0547 239 :TEIHPLKKA 1bd0A 173 :VNTDYFSYQ T0547 252 :GNIYTELRKMGAKNLKAINLG 1bd0A 182 :YTRFLHMLEWLPSRPPLVHCA T0547 309 :QKKDLEPDIFI 1bd0A 209 :RFPDRTFNMVR T0547 321 :SGRFVAA 1bd0A 220 :FGIAMYG T0547 328 :NHAVLIAPVLELFSQEYAE 1bd0A 243 :EAFSLHSRLVHVKKLQPGE T0547 349 :LILKK 1bd0A 262 :KVSYG T0547 401 :DR 1bd0A 267 :AT T0547 403 :SNAEILTHLITKK 1bd0A 271 :AQTEEWIGTIPIG T0547 421 :GDKQNPADLLAIQDEVQERYLVNF 1bd0A 284 :YADGWLRRLQHFHVLVDGQKAPIV T0547 470 :EEPTRSASIWDIT 1bd0A 308 :GRICMDQCMIRLP T0547 501 :DVDVE 1bd0A 321 :GPLPV T0547 533 :PTEAIISINEKGYEV 1bd0A 326 :GTKVTLIGRQGDEVI T0547 555 :SILDTLEDLDY 1bd0A 341 :SIDDVARHLET Number of specific fragments extracted= 22 number of extra gaps= 0 total=1347 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1463585725.pdb -s /var/tmp/to_scwrl_1463585725.seq -o /var/tmp/from_scwrl_1463585725.pdb > /var/tmp/scwrl_1463585725.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1463585725.pdb Number of alignments=60 # command:# reading script from file T0547.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2o0tA/T0547-2o0tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2o0tA/T0547-2o0tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2o0tA read from 2o0tA/T0547-2o0tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 8 :IWGNENF 2o0tA 11 :VWPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKE 2o0tA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2o0tA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 2o0tA 62 :G T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 2o0tA 118 :KSVSELTAAV T0547 148 :EMGHNIT 2o0tA 128 :KAGVGHI T0547 156 :TIEGLNELEAIIDIAKE 2o0tA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGIWAKSGG 2o0tA 160 :VRLTVGVEAHTHEFISTA T0547 200 :INSKFGL 2o0tA 179 :EDQKFGL T0547 207 :TSTELIEAVNLLKENKLLEQFT 2o0tA 188 :ASGAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2o0tA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMG 2o0tA 241 :EFG T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2o0tA 247 :TAQIATVDLGGGLGISYLPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 2o0tA 329 :HRR T0547 348 :KLI 2o0tA 332 :YVS T0547 353 :K 2o0tA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2o0tA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGY 2o0tA 366 :VPARLVGKHCESGDIIVRDT T0547 398 :DLQ 2o0tA 386 :WVP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2o0tA 425 :HAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 27 number of extra gaps= 3 total=1374 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1712595838.pdb -s /var/tmp/to_scwrl_1712595838.seq -o /var/tmp/from_scwrl_1712595838.pdb > /var/tmp/scwrl_1712595838.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1712595838.pdb Number of alignments=61 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2qghA/T0547-2qghA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2qghA/T0547-2qghA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2qghA read from 2qghA/T0547-2qghA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2qghA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)P461 because last residue in template chain is (2qghA)L402 T0547 31 :IIDIVKE 2qghA 4 :YEELFQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2qghA 11 :HKTPFYLYDFDKIKQAFLNYKEAF T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 35 :KGRKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGHNIT 2qghA 102 :KLNILFL T0547 156 :TIEGLNELEAIIDIAKE 2qghA 109 :NVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2qghA 126 :LGIKARISIRINPNIDAKTHPYISTG T0547 200 :INSKFGLTSTELIEAVNLLKENKLLEQFT 2qghA 153 :KENKFGVGEKEALEMFLWAKKSAFLEPVS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 182 :VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQFKNE 2qghA 216 :DLRFFDVGGGIGVSYENEETI T0547 291 :TLREYANDVVFI 2qghA 237 :KLYDYAQGILNA T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 249 :LQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AE 2qghA 284 :KR T0547 348 :KLILKK 2qghA 286 :FVIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNA 2qghA 293 :MNDFLRPSLYHAKHAIRVITP T0547 377 :YLHDSIDHLESILTLFDLGY 2qghA 320 :SPCDVVGPVCESSDTFLKDA T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 2qghA 340 :HLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 441 :LVNFSLFQSMPDFWGLEQNF 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 19 number of extra gaps= 0 total=1393 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_132065787.pdb -s /var/tmp/to_scwrl_132065787.seq -o /var/tmp/from_scwrl_132065787.pdb > /var/tmp/scwrl_132065787.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_132065787.pdb Number of alignments=62 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1twiA/T0547-1twiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1twiA/T0547-1twiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1twiA read from 1twiA/T0547-1twiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1twiA in template set T0547 9 :WGNENFIIKNGKVCI 1twiA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1twiA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLG 1twiA 76 :FIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1twiA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1twiA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1twiA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1twiA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1twiA 190 :KKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLEQFT 1twiA 202 :IAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1twiA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1twiA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1twiA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1twiA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1twiA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1twiA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 1twiA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 438 :ERYLVNFSLFQSMPDFWGLEQN 1twiA 422 :KKGVFLIRERETYADLIAKDIV T0547 465 :LD 1twiA 444 :PP Number of specific fragments extracted= 21 number of extra gaps= 0 total=1414 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_463360455.pdb -s /var/tmp/to_scwrl_463360455.seq -o /var/tmp/from_scwrl_463360455.pdb > /var/tmp/scwrl_463360455.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_463360455.pdb Number of alignments=63 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2pljA/T0547-2pljA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2pljA/T0547-2pljA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2pljA read from 2pljA/T0547-2pljA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)G487 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 31 :IIDIVKE 2pljA 26 :IEASVEQ T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2pljA 33 :FGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINIGF 2pljA 109 :HPIKRDADIRDAL T0547 148 :EMGHNIT 2pljA 122 :AYGCNVF T0547 156 :TIEGLNELE 2pljA 129 :VVDNLNELE T0547 169 :IAKERFKP 2pljA 138 :KFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LEQFT 2pljA 186 :IRIKG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKN 2pljA 191 :LSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVM T0547 291 :TLREYANDVVFI 2pljA 246 :PIDQFCAPINEA T0547 307 :AEQKKD 2pljA 258 :LSLLPE T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2pljA 264 :TVHVLAEPGRFICAPAVTSVASVMGQAEREGQI T0547 348 :KLILKK 2pljA 297 :WYYLDD T0547 354 :QNPKLIDELYDLYKSI 2pljA 304 :IYGSFSGLMFDDARYP T0547 370 :KPSNALEYLHDSIDHLESILTLFDLGY 2pljA 323 :IKQGGELIPSVLSGPTCDSVDVIAENI T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLA 2pljA 350 :LLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQ T0547 480 :DITCDS 2pljA 384 :TIALNE Number of specific fragments extracted= 20 number of extra gaps= 1 total=1434 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1214726410.pdb -s /var/tmp/to_scwrl_1214726410.seq -o /var/tmp/from_scwrl_1214726410.pdb > /var/tmp/scwrl_1214726410.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1214726410.pdb Number of alignments=64 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2p3eA/T0547-2p3eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2p3eA/T0547-2p3eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2p3eA read from 2p3eA/T0547-2p3eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 12 :ENFIIKNGKVCI 2p3eA 9 :PYLEYRDGELFI T0547 27 :KKPAIIDIVKE 2p3eA 21 :EGVSLKELAQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2p3eA 32 :FGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVY T0547 132 :NGFKDRELINIGF 2p3eA 108 :GVGKTEKELTDAV T0547 148 :EMGHNIT 2p3eA 121 :DSEILMF T0547 156 :TIEGLNELEAIIDIAKE 2p3eA 128 :NVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2p3eA 175 :KFGVDIREAQKEYEYASKLENLEIVG T0547 230 :I 2p3eA 201 :I T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2p3eA 235 :DIKYLDIGGGLGIKYKPEDKEP T0547 291 :TLREYANDV 2p3eA 257 :APQDLADLL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 348 :KLILKK 2p3eA 306 :FIIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNAL 2p3eA 313 :MNDLIRPSIYNAYHHIIPVETK T0547 378 :LHDSIDHLESILTLFDLGY 2p3eA 340 :VADIVGPICETGDFLALDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2p3eA 359 :EIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2p3eA 397 :ENGSVKLIRKRENYDYIVEPSL Number of specific fragments extracted= 20 number of extra gaps= 1 total=1454 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_709067407.pdb -s /var/tmp/to_scwrl_709067407.seq -o /var/tmp/from_scwrl_709067407.pdb > /var/tmp/scwrl_709067407.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_709067407.pdb Number of alignments=65 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2j66A/T0547-2j66A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2j66A/T0547-2j66A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2j66A read from 2j66A/T0547-2j66A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)P356 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S368 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)Q458 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 28 :KPAIIDIVKE 2j66A 5 :QAEITALTKR T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2j66A 15 :FETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGP T0547 135 :KDRELINIGF 2j66A 95 :KKRSELEIAV T0547 148 :EMGHNIT 2j66A 105 :QSGIYCI T0547 156 :TIEGLNELEAIIDIAKE 2j66A 112 :IAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFT 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2j66A 184 :IHVYTGTQNLNTDSIIESMKYTVDLGRNIY T0547 260 :KMGA 2j66A 215 :RYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 284 :NEK 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKNIAEQ 2j66A 241 :DIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEV T0547 348 :KLILKK 2j66A 296 :FVIVDG T0547 354 :QN 2j66A 303 :MH T0547 369 :I 2j66A 322 :M T0547 377 :YLHDSIDHLESILTLFDLGY 2j66A 337 :EKVTIAGPLCTPEDCLGKDV T0547 398 :DLQDRSNAEILTHLITKKAILLLGD 2j66A 357 :HVPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPADLLAIQDEVQER 2j66A 383 :HFLGHPTPIEILKRNGS T0547 441 :LVNFSLFQSMPDFWGLE 2j66A 400 :YELIRRKGTADDIVATQ Number of specific fragments extracted= 22 number of extra gaps= 1 total=1476 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_2015756140.pdb -s /var/tmp/to_scwrl_2015756140.seq -o /var/tmp/from_scwrl_2015756140.pdb > /var/tmp/scwrl_2015756140.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2015756140.pdb Number of alignments=66 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knwA/T0547-1knwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1knwA/T0547-1knwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knwA read from 1knwA/T0547-1knwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1knwA in template set Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 30 :AIIDIVKE 1knwA 16 :NLLRLPAE T0547 43 :YKGPLLLRFPHLIQKQIENI 1knwA 24 :FGCPVWVYDAQIIRRQIAAL T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 1knwA 44 :KQFDVVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APITVNGF 1knwA 95 :DDIVFTAD T0547 135 :KDRELINIGF 1knwA 104 :IDQATLERVS T0547 148 :EMGHN 1knwA 114 :ELQIP T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 1knwA 137 :HRVWLRVNPGFGHGHSQKTNTG T0547 200 :INSKFGLTSTELIEAVNLLKENK 1knwA 160 :ENSKHGIWYTDLPAALDVIQRHH T0547 224 :LEQFT 1knwA 183 :LQLVG T0547 230 :IHFHLGSQ 1knwA 188 :IHMHIGSG T0547 239 :TEIHPLKKALNEAGNIYTEL 1knwA 196 :VDYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1knwA 218 :DLQAISAGGGLSVPYQQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKD 1knwA 240 :DTEHYYGLWNAAREQIARHLGH T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 262 :PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 348 :KLILKK 1knwA 295 :FVLVDA T0547 354 :QNPKLIDELYDLYKSI 1knwA 302 :FNDLMRPAMYGSYHHI T0547 370 :KPSNALE 1knwA 325 :RSLEHAP T0547 377 :YLHDSIDHLESILTLF 1knwA 333 :VETVVAGPLCESGDVF T0547 393 :DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1knwA 355 :NVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQ T0547 441 :LVNFSLFQSMPDFWGLEQNF 1knwA 402 :ARLIRRRQTIEELLALELLH Number of specific fragments extracted= 23 number of extra gaps= 0 total=1499 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1004835882.pdb -s /var/tmp/to_scwrl_1004835882.seq -o /var/tmp/from_scwrl_1004835882.pdb > /var/tmp/scwrl_1004835882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1004835882.pdb Number of alignments=67 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2yxxA/T0547-2yxxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2yxxA/T0547-2yxxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2yxxA read from 2yxxA/T0547-2yxxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2yxxA in template set T0547 30 :AIIDIVKE 2yxxA 3 :ILRKVAEI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 11 :HGTPTYVYFEETLRKRSRLVKEVFE T0547 77 :G 2yxxA 36 :G T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGN T0547 135 :KDRELINIGF 2yxxA 92 :KSRDQMEHFL T0547 148 :EMGHNIT 2yxxA 102 :REDVRIV T0547 156 :TIEGLNELEAIIDI 2yxxA 109 :NVDSFEEMEIWREL T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2yxxA 123 :NPEGVEYFIRVNPEVDAKTHPHISTG T0547 200 :INSKFGLTSTELIEAVNLLK 2yxxA 150 :KKHKFGIPLEDLDSFMERFR T0547 222 :K 2yxxA 170 :S T0547 224 :LEQFT 2yxxA 171 :MNIRG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 176 :LHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFKN 2yxxA 205 :GFEEINIGGGWGINYSGEEL T0547 291 :TLREYANDV 2yxxA 225 :DLSSYREKV T0547 307 :AEQKK 2yxxA 234 :VPDLK T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2yxxA 239 :RFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKA T0547 348 :KLILKK 2yxxA 273 :FVVVDG T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2yxxA 280 :MNVLIRPALYSAYHRIFVLGKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2yxxA 305 :MRADVVGPLCESGDVIAYDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWG 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFK Number of specific fragments extracted= 21 number of extra gaps= 0 total=1520 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_416297845.pdb -s /var/tmp/to_scwrl_416297845.seq -o /var/tmp/from_scwrl_416297845.pdb > /var/tmp/scwrl_416297845.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_416297845.pdb Number of alignments=68 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2nvaA/T0547-2nvaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2nvaA/T0547-2nvaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2nvaA read from 2nvaA/T0547-2nvaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 29 :PAIIDIVKE 2nvaA 3 :SVVNNILKA T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNF 2nvaA 12 :HPHQTKSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 148 :EMGHNIT 2nvaA 104 :DQGVDIA T0547 156 :TIEGLNELEAIIDIAKE 2nvaA 111 :TFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGV 2nvaA 128 :CKMILRIRCDDPNA T0547 197 :SGGINSKFGLTSTELIEAVNLLKENK 2nvaA 142 :TVQLGNKFGANEDEIRHLLEYAKQLD T0547 224 :LEQFT 2nvaA 168 :IEVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 173 :ISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLY T0547 348 :KLILKK 2nvaA 279 :EYFFNE T0547 354 :QNPKLID 2nvaA 286 :TYGGFSN T0547 362 :LYDLYKSI 2nvaA 293 :VIFEKSVP T0547 370 :KPSNALE 2nvaA 307 :DVPDDEE T0547 377 :YLHDSIDHLESILTLFDLGY 2nvaA 315 :VPSVLYGCTCDGVDVINHNV T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQ 2nvaA 335 :ALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVY Number of specific fragments extracted= 21 number of extra gaps= 0 total=1541 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_466356200.pdb -s /var/tmp/to_scwrl_466356200.seq -o /var/tmp/from_scwrl_466356200.pdb > /var/tmp/scwrl_466356200.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_466356200.pdb Number of alignments=69 # Reading fragments from alignment file # Attempting to read fragment alignments from file 7odcA/T0547-7odcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 7odcA/T0547-7odcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 7odcA read from 7odcA/T0547-7odcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 18 :NGKVCINYEKKPAIIDIVKELR 7odcA 7 :DEFDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANP T0547 135 :KDRELINIGF 7odcA 115 :KQVSQIKYAA T0547 148 :EMGHNIT 7odcA 125 :SNGVQMM T0547 156 :TIEGLNELEAIIDIAKE 7odcA 132 :TFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LEQFT 7odcA 189 :IDVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 194 :VSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEY 7odcA 228 :SMHLLDIGGGFPGSE T0547 283 :KNEK 7odcA 243 :DTKL T0547 291 :TLREYANDVVFILKNIA 7odcA 247 :KFEEITSVINPALDKYF T0547 308 :EQKKD 7odcA 265 :SDSGV T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 270 :RIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKK 7odcA 312 :QTFMYYVND T0547 354 :QNPKLIDELYDLYK 7odcA 322 :VYGSFNCILYDHAH T0547 368 :SIKPSNALEYLHDSIDHLESILTLFDLGY 7odcA 342 :KRPKPDEKYYSSSIWGPTCDGLDRIVERC T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLA 7odcA 371 :NLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPN T0547 476 :ASIWD 7odcA 405 :IYYVM Number of specific fragments extracted= 21 number of extra gaps= 0 total=1562 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1195051769.pdb -s /var/tmp/to_scwrl_1195051769.seq -o /var/tmp/from_scwrl_1195051769.pdb > /var/tmp/scwrl_1195051769.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1195051769.pdb Number of alignments=70 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tufA/T0547-1tufA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1tufA/T0547-1tufA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tufA read from 1tufA/T0547-1tufA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 9 :WGNENFIIKNGKVCI 1tufA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1tufA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1tufA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYP 1tufA 74 :KEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1tufA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1tufA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1tufA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1tufA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTS 1tufA 190 :KKNKFGLDV T0547 209 :TELIEAVNLLKENKLLEQFT 1tufA 201 :GIAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1tufA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNI 1tufA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1tufA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1tufA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1tufA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1tufA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKG T0547 441 :LVNFSLFQSMPDFWGLE 1tufA 425 :VFLIRERETYADLIAKD T0547 462 :IMPLDR 1tufA 442 :IVPPHL Number of specific fragments extracted= 22 number of extra gaps= 0 total=1584 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_674511607.pdb -s /var/tmp/to_scwrl_674511607.seq -o /var/tmp/from_scwrl_674511607.pdb > /var/tmp/scwrl_674511607.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_674511607.pdb Number of alignments=71 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3gwqA/T0547-3gwqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 3gwqA/T0547-3gwqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 3gwqA read from 3gwqA/T0547-3gwqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 5 :GIDI 3gwqA 35 :EWNL T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 39 :LNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNN 3gwqA 95 :WGITLATAHQVRAAYHGGV T0547 127 :APITVNGF 3gwqA 114 :SRVLMANQ T0547 135 :KDRELINIGFIAAE 3gwqA 123 :VGRRNMMMVAELLS T0547 149 :MGHNITLTIEGLNELEAIIDIAKE 3gwqA 138 :PEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRV 3gwqA 162 :VNKQLQVLLEL T0547 187 :HSAGV 3gwqA 173 :GVPGG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKEN 3gwqA 183 :DAAQRNAVLEAITRY T0547 222 :KLLEQFT 3gwqA 199 :DTLKLAG T0547 230 :IHFHLG 3gwqA 206 :VELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAV 3gwqA 242 :APAVLSGAGSAWY T0547 293 :REYAND 3gwqA 255 :DVVAEE T0547 303 :LKNIAEQ 3gwqA 261 :FVKASET T0547 313 :LEPDIFIESGRFVAA 3gwqA 268 :GKVEVVLRPGCYLTH T0547 328 :NHAVLIA 3gwqA 310 :PALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 348 :KLILKK 3gwqA 326 :RAIIGL T0547 354 :QNPKLIDE 3gwqA 333 :KRDSAFDA T0547 367 :KSI 3gwqA 341 :GMP T0547 370 :KPSNALE 3gwqA 355 :APRDIAA T0547 377 :YLHDSIDHLES 3gwqA 363 :EGWEIFGLMDQ T0547 389 :LTLFDLG 3gwqA 374 :HAYLRIP T0547 398 :DLQDRSNAEILTHL 3gwqA 381 :AGADLKVGDMIAFD T0547 450 :MPDFWGLEQNFPI 3gwqA 395 :ISHPCLTFDKWRQ T0547 512 :GFFL 3gwqA 408 :VLVV T0547 542 :EKGYEVEGIIEA 3gwqA 412 :DPAYRVTEVIET Number of specific fragments extracted= 30 number of extra gaps= 1 total=1614 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1838175073.pdb -s /var/tmp/to_scwrl_1838175073.seq -o /var/tmp/from_scwrl_1838175073.pdb > /var/tmp/scwrl_1838175073.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1838175073.pdb Number of alignments=72 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2dy3A/T0547-2dy3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2dy3A/T0547-2dy3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2dy3A read from 2dy3A/T0547-2dy3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKV 2dy3A 25 :GPAKLMAVVKA T0547 88 :NQYPGFVKNLVKLGK 2dy3A 40 :HGVEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGF 2dy3A 75 :QEVLCWIW T0547 135 :K 2dy3A 84 :P T0547 140 :INIGF 2dy3A 88 :FRAAI T0547 148 :EMGH 2dy3A 93 :DRNI T0547 153 :I 2dy3A 97 :D T0547 155 :LTIEGLNELEAIID 2dy3A 98 :LAVISPAHAKALIE T0547 173 :RFKPKPNIGLRVRLHSA 2dy3A 112 :TDAEHIRVSIKIDSGLH T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIEVTG T0547 230 :IHFHL 2dy3A 155 :MFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLG 2dy3A 190 :ECPVNHVC T0547 291 :TLREYA 2dy3A 198 :NSPAFL T0547 306 :IAEQKK 2dy3A 204 :TRSDLH T0547 315 :PDI 2dy3A 210 :MEM T0547 319 :IESGRFVAA 2dy3A 213 :VRPGLAFYG T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKK 2dy3A 266 :GFVAVVPA T0547 354 :QNPKLIDEL 2dy3A 275 :YADGMPRHA T0547 372 :SNALE 2dy3A 284 :QGKFS T0547 377 :YLHDSIDHLESILTLFDL 2dy3A 294 :LDYPQVGRVCMDQFVISL T0547 398 :DLQ 2dy3A 313 :DNP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERY 2dy3A 317 :GVEAGAKAVIFGENGHDATDFAERLDTINYEVVCRPTGRT Number of specific fragments extracted= 26 number of extra gaps= 0 total=1640 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1998341423.pdb -s /var/tmp/to_scwrl_1998341423.seq -o /var/tmp/from_scwrl_1998341423.pdb > /var/tmp/scwrl_1998341423.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1998341423.pdb Number of alignments=73 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rcqA/T0547-1rcqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1rcqA/T0547-1rcqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1rcqA read from 1rcqA/T0547-1rcqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)K44 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 45 :GPL 1rcqA 2 :RPA T0547 48 :LLRFPHLIQKQIENIYGNF 1rcqA 6 :ALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKV 1rcqA 27 :RALAVIKA T0547 88 :NQYPGFVKNLVKLG 1rcqA 39 :HGAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEASELELIV T0547 148 :EMG 1rcqA 92 :AHD T0547 153 :ITLTIEGLNELEAI 1rcqA 95 :FWCVVHCAWQLEAI T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLHS 1rcqA 124 :DSGM T0547 191 :V 1rcqA 128 :H T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 223 :LLEQFT 1rcqA 149 :KVAKIV T0547 230 :IHFHLG 1rcqA 155 :MMSHFS T0547 236 :SQITEIHPLKKALNEAGNIY 1rcqA 162 :ADELDCPRTEEQLAAFSAAS T0547 262 :GAK 1rcqA 183 :GLE T0547 269 :INLGG 1rcqA 188 :ISLRN T0547 292 :LREYA 1rcqA 193 :SPAVL T0547 306 :IAEQ 1rcqA 198 :GWPK T0547 313 :LEPDIFI 1rcqA 202 :VPSDWVR T0547 320 :ESGRFVAANHAVLIAPVLELFSQE 1rcqA 223 :HPLADRLRPVMTLESKVISVRDLP T0547 344 :YA 1rcqA 261 :RR T0547 348 :KLILKK 1rcqA 265 :IGVVAM T0547 354 :QNPKLIDE 1rcqA 272 :YADGYPRH T0547 371 :PSNALE 1rcqA 280 :AADGTL T0547 377 :YLHDSIDHLESILTLFDLGY 1rcqA 291 :KPGRLVGRVSMDMLTVDLTD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1rcqA 311 :HPQAGLGSRVELWGPNVPVGALAAQFGSIP T0547 557 :LDTLED 1rcqA 341 :YQLLCN Number of specific fragments extracted= 27 number of extra gaps= 4 total=1667 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_577130804.pdb -s /var/tmp/to_scwrl_577130804.seq -o /var/tmp/from_scwrl_577130804.pdb > /var/tmp/scwrl_577130804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_577130804.pdb Number of alignments=74 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xfcA/T0547-1xfcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1xfcA/T0547-1xfcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1xfcA read from 1xfcA/T0547-1xfcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKV 1xfcA 33 :GHAQLMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1xfcA 48 :HGATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWLHP T0547 135 :KDRELI 1xfcA 95 :DFGPAL T0547 148 :EMGH 1xfcA 101 :LADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTST 1xfcA 140 :RNGVGPA T0547 210 :ELIEAVNLLKENKLLEQFT 1xfcA 150 :AMLTALRQAMAEDAVRLRG T0547 230 :IHFH 1xfcA 169 :LMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLG 1xfcA 204 :RFEVAHLS T0547 291 :TLREYA 1xfcA 212 :NSSATM T0547 309 :Q 1xfcA 221 :D T0547 313 :LEPDI 1xfcA 222 :LTFDL T0547 319 :IESGRFVAA 1xfcA 227 :VRPGIAVYG T0547 328 :NHAVLIAPVLELFSQE 1xfcA 249 :PAMTVKCAVALVKSIR T0547 344 :YAENKLILKK 1xfcA 279 :RDTNLALLPI T0547 354 :QNPKLIDELY 1xfcA 290 :YADGVFRSLG T0547 373 :NALE 1xfcA 300 :GRLE T0547 377 :YLHDSIDHLESILTLFDLGYVDL 1xfcA 309 :RRCPGVGRICMDQFMVDLGPGPL T0547 401 :DRSNAEILTHLITKKAILLL 1xfcA 332 :DVAEGDEAILFGPGIRGEPT T0547 516 :VGAYQEVLG 1xfcA 352 :AQDWADLVG T0547 554 :QSILDTL 1xfcA 361 :TIHYEVV Number of specific fragments extracted= 25 number of extra gaps= 1 total=1692 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_318027382.pdb -s /var/tmp/to_scwrl_318027382.seq -o /var/tmp/from_scwrl_318027382.pdb > /var/tmp/scwrl_318027382.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_318027382.pdb Number of alignments=75 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3llxA/T0547-3llxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 3llxA/T0547-3llxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 3llxA read from 3llxA/T0547-3llxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 9 :AHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNL 3llxA 48 :LRTLEAAGYL T0547 101 :GK 3llxA 61 :KS T0547 106 :YGLEAGSKAELLLAMAYNNE 3llxA 63 :APATVSTLAEAEAYAKAGYT T0547 127 :APITV 3llxA 83 :DLLYA T0547 132 :NGF 3llxA 89 :GIA T0547 135 :KDRELINIGF 3llxA 93 :AKLKRVAALR T0547 148 :EMGHNITLTIEGLNELEAIIDIAKE 3llxA 103 :QQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRL 3llxA 128 :FGQDFSVFIEIDS T0547 189 :AGV 3llxA 141 :DDH T0547 203 :KFGLTST 3llxA 144 :RGGIKPS T0547 213 :EAVNLLKENK 3llxA 153 :KLLTIAKTLG T0547 224 :LEQFT 3llxA 163 :EHFTG T0547 230 :IHFHLGS 3llxA 168 :LMTHAGG T0547 237 :QITEIHPLKKALNE 3llxA 177 :ACNTEQGLKNFAKQ T0547 251 :AGNIYTELRKMGA 3llxA 195 :VRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVE 3llxA 217 :TPTAH T0547 306 :IAEQKKDLE 3llxA 222 :FGEDFSDIS T0547 318 :FIESGRFVAAN 3llxA 231 :EVRAGVYTTFD T0547 329 :HAVLIAPVLE 3llxA 256 :AMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKK 3llxA 274 :LTDS T0547 363 :YDLYKSIKPSNALE 3llxA 279 :WMALSRDSGTAGQN T0547 377 :YLHDSID 3llxA 309 :DGLCVNS T0547 386 :ESILTLFDLGYVDLQDRSNAEILTHLI 3llxA 318 :QEHGVIELSDAYQLEDFPVGHQLRIMP T0547 414 :KKAILLLGD 3llxA 345 :NHACATAAM T0547 423 :K 3llxA 355 :P T0547 440 :YL 3llxA 356 :VY T0547 481 :ITCDSDGEISYS 3llxA 358 :HVLMSDGSHNTW Number of specific fragments extracted= 32 number of extra gaps= 5 total=1724 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_126537909.pdb -s /var/tmp/to_scwrl_126537909.seq -o /var/tmp/from_scwrl_126537909.pdb > /var/tmp/scwrl_126537909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_126537909.pdb Number of alignments=76 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bd0A/T0547-1bd0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1bd0A/T0547-1bd0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1bd0A read from 1bd0A/T0547-1bd0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1bd0A in training set T0547 42 :GYKGPL 1bd0A 3 :DFHRDT T0547 48 :LLRFPHLIQKQIENIYGNFN 1bd0A 10 :AEVDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKV 1bd0A 30 :DDTHIMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1bd0A 45 :HGDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1bd0A 60 :SRLAVAFLDEALALREKGIE T0547 127 :APITVNGFKDRELINIGF 1bd0A 80 :APILVLGASRPADAALAA T0547 148 :EMG 1bd0A 98 :QQR T0547 153 :ITLTIEGLNELEAIIDIAK 1bd0A 101 :IALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLH 1bd0A 120 :GPFPIHFHLKMDTG T0547 190 :GV 1bd0A 134 :MG T0547 203 :KFGL 1bd0A 136 :RLGV T0547 207 :TSTELIEAVNLLKENKLLEQFT 1bd0A 141 :DEEETKRIVALIERHPHFVLEG T0547 230 :IHFHLG 1bd0A 163 :LYTHFA T0547 236 :SQITEIHPLKKALNEAGNIYTEL 1bd0A 170 :ADEVNTDYFSYQYTRFLHMLEWL T0547 262 :G 1bd0A 193 :P T0547 264 :KNLKAINLGGGLAV 1bd0A 194 :SRPPLVHCANSAAS T0547 310 :KK 1bd0A 211 :PD T0547 313 :LEPDI 1bd0A 213 :RTFNM T0547 319 :IESGRFVAA 1bd0A 218 :VRFGIAMYG T0547 328 :NHAVLIAPVLELFSQE 1bd0A 243 :EAFSLHSRLVHVKKLQ T0547 344 :YAE 1bd0A 274 :EEW T0547 348 :KLILKK 1bd0A 277 :IGTIPI T0547 354 :QNPKLIDELY 1bd0A 284 :YADGWLRRLQ T0547 374 :ALE 1bd0A 294 :HFH T0547 377 :YLHDSIDHLES 1bd0A 302 :QKAPIVGRICM T0547 390 :TLFDLGY 1bd0A 313 :DQCMIRL T0547 399 :LQDRSNAEILTHLI 1bd0A 320 :PGPLPVGTKVTLIG T0547 413 :TKKAILLLGD 1bd0A 342 :IDDVARHLET T0547 428 :DLLAIQDEVQERYLVNFSL 1bd0A 352 :INYEVPCTISYRVPRIFFR T0547 543 :KGYEVEGI 1bd0A 371 :HKRIMEVR Number of specific fragments extracted= 30 number of extra gaps= 0 total=1754 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1917282343.pdb -s /var/tmp/to_scwrl_1917282343.seq -o /var/tmp/from_scwrl_1917282343.pdb > /var/tmp/scwrl_1917282343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1917282343.pdb Number of alignments=77 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2vd8A/T0547-2vd8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 2vd8A/T0547-2vd8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2vd8A read from 2vd8A/T0547-2vd8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :NQ 2vd8A 43 :NA T0547 90 :YPGF 2vd8A 49 :YVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2vd8A 62 :TRLAVAFLDEALVLRRAGIT T0547 127 :APITVNGFKDRELINIGF 2vd8A 82 :APILVLGPSPPRDINVAA T0547 148 :EMG 2vd8A 100 :END T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 190 :GV 2vd8A 136 :MG T0547 203 :KFGL 2vd8A 138 :RIGI T0547 207 :T 2vd8A 143 :E T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLEQFT 2vd8A 154 :LEGAPFLELEG T0547 230 :IHFHLG 2vd8A 165 :VYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYSQFKNEK 2vd8A 204 :VHTANSAATLRFQGITFN T0547 318 :FIESGRFVAA 2vd8A 222 :AVRIGIAMYG T0547 328 :NHAVLI 2vd8A 248 :PALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 345 :AENKLILKK 2vd8A 279 :EEWIATVAI T0547 354 :QNPKLIDELYD 2vd8A 289 :YADGWLRRLQG T0547 375 :LE 2vd8A 300 :FE T0547 379 :HDSIDHLES 2vd8A 309 :VPIVGRVTM T0547 395 :GYV 2vd8A 318 :DQF T0547 400 :QDRSNA 2vd8A 326 :CEVPLG T0547 409 :THLI 2vd8A 335 :TLIG T0547 413 :TKKAILLL 2vd8A 347 :ATEVAEYS T0547 426 :PADLLAIQDEVQERYLVNFSLF 2vd8A 355 :GTINYEIITTISFRVPRIFIRN T0547 451 :PDFWGLEQ 2vd8A 380 :VEVINYLN Number of specific fragments extracted= 38 number of extra gaps= 0 total=1792 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_864599130.pdb -s /var/tmp/to_scwrl_864599130.seq -o /var/tmp/from_scwrl_864599130.pdb > /var/tmp/scwrl_864599130.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_864599130.pdb Number of alignments=78 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vfsA/T0547-1vfsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 1vfsA/T0547-1vfsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1vfsA read from 1vfsA/T0547-1vfsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 45 :GPLLLRFPHLIQKQIENIYGNF 1vfsA 7 :RVYAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLK 1vfsA 29 :PRSALMAVVK T0547 87 :VNQYPGFVKNLVKLGK 1vfsA 43 :GHGAVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGFKDRELINIGF 1vfsA 79 :GRIMCWLWTPGGPWREAI T0547 148 :EMGH 1vfsA 97 :ETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHSA 1vfsA 131 :DTGLG T0547 203 :KFGLTSTELIEAVNLLKEN 1vfsA 136 :RNGCQPADWAELVGAAVAA T0547 222 :KLLEQFT 1vfsA 158 :GTVQVTG T0547 230 :IHFHLG 1vfsA 165 :VWSHFA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 172 :ADEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAV 1vfsA 200 :DPEVRHIANSPAT T0547 305 :NIAEQKKD 1vfsA 213 :LTLPETHF T0547 316 :DIF 1vfsA 221 :DLV T0547 320 :ESGRFVAA 1vfsA 224 :RTGLAVYG T0547 328 :NHAVLIAPVLELFSQE 1vfsA 248 :PAMTLRASLALVKTVP T0547 344 :YAE 1vfsA 279 :ETH T0547 348 :KLILKK 1vfsA 282 :LALVPA T0547 354 :QNPKLIDELY 1vfsA 289 :YADGIPRNAS T0547 373 :NALE 1vfsA 299 :GRGP T0547 377 :YLHDSIDHLE 1vfsA 308 :KIRRAAGRIA T0547 394 :LGYV 1vfsA 318 :MDQF T0547 398 :DLQDRSNAEILTHLITKKA 1vfsA 326 :GEDLAEAGDEAVILGDAER T0547 417 :ILLLGDKQNPADLLAIQDEVQER 1vfsA 348 :TAEDWAQAAHTIAYEIVTRIGGR Number of specific fragments extracted= 26 number of extra gaps= 0 total=1818 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1322137973.pdb -s /var/tmp/to_scwrl_1322137973.seq -o /var/tmp/from_scwrl_1322137973.pdb > /var/tmp/scwrl_1322137973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1322137973.pdb Number of alignments=79 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3co8A/T0547-3co8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from 3co8A/T0547-3co8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 3co8A read from 3co8A/T0547-3co8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)I241 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 3co8A 7 :RSTRIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKV 3co8A 30 :GAKTLWLAVKS T0547 88 :NQYPGFVKNLVKLGK 3co8A 45 :HGLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNE 3co8A 60 :DGLAVSVLDEGIAIRQAGID T0547 127 :APITVNGFKDRELINIGF 3co8A 80 :DFILILGPIDVKYAPIAS T0547 148 :EMGH 3co8A 98 :KYHF T0547 154 :TLTIEGLNELEAIIDIAKE 3co8A 102 :LTTVSSLDWLKSADKILGK T0547 176 :PKPNIGLRV 3co8A 121 :EKLSVNLAV T0547 187 :HSAGV 3co8A 130 :DTGMN T0547 203 :KFGL 3co8A 135 :RIGV T0547 207 :TSTELIEAVNLLKEN 3co8A 140 :SKKDLKDEIEFLQEH T0547 222 :KLLEQFT 3co8A 156 :DHFSYDG T0547 230 :IHFHL 3co8A 163 :IFTHF T0547 242 :HPL 3co8A 179 :QRQ T0547 252 :GNIYTELRKMGA 3co8A 182 :KNRWYELIDGLI T0547 265 :NLKAINLGG 3co8A 194 :MPRYVHVMN T0547 300 :VFILKNIAEQKK 3co8A 203 :SGAAMYHSKELP T0547 313 :LEPDIFI 3co8A 215 :GCNSIAR T0547 321 :SGRFVAAN 3co8A 222 :VGTVVYGV T0547 329 :HAVLIAPVLELFSQE 3co8A 245 :VFELKSALTFVKKIP T0547 344 :YAENKLILKK 3co8A 274 :RDTWIGTLPI T0547 354 :QNPKLIDELYD 3co8A 285 :YGDGWLAEYQD T0547 375 :LE 3co8A 296 :FQ T0547 377 :YLHDSIDHLES 3co8A 303 :QKCRQVGQIAM T0547 395 :GYV 3co8A 314 :DQM T0547 399 :LQDRSNAEILTHLITK 3co8A 321 :PHEYPIGTEVTLIGKS T0547 437 :QERYL 3co8A 337 :GKYEN T0547 555 :SILDTLEDLDY 3co8A 342 :TLYDLHKHSGV Number of specific fragments extracted= 28 number of extra gaps= 0 total=1846 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1968334315.pdb -s /var/tmp/to_scwrl_1968334315.seq -o /var/tmp/from_scwrl_1968334315.pdb > /var/tmp/scwrl_1968334315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1968334315.pdb Number of alignments=80 # command: # TryAllAlign to optimize cost = # ( 5.395 * align_constraints + 0.433 * phobic_fit + 5.237 * pred_nb11_back(9.650) + 3.487 * pred_bys_back + 3.032 * pred_alpha_back + 11.769 * wet6.5(6.500, /log(length)) + 2.146 * pred_n_notor_back + 59.013 * noncontact_bonus + 1.605 * break + 2.341 * pred_o_sep_back + 0.619 * sidechain_clashes + 2.571 * bystroff + 0.143 * contact(8.000) + 0.939 * alpha_prev + 0.741 * pred_n_sep_back + 0.319 * ehl2_constraints + 0.198 * deep_knot + 0.010 * cb14(14.000) ) # Will try all 80 alignments, # shrinking each end by up to 0.000*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 81: T0547.try1-al1A+T0547-2qghA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m:2qghA at pool[35] 2.367 cost/residue, 3000 clashes 0.192 breaks # command:# naming current conformation T0547.try1-al2 # command:# Reading fragments from alignment file # Attempting to read fragment alignments from file all-align.a2m with NO bystroff filtering # adding to alignment library always # T0547 read from all-align.a2m # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)D40 because first residue in template chain is (1bd0A)N2 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNF 1bd0A 3 :DFHRDTWAEVDLDAIYDNVENLRRLL T0547 76 :KGGFNAVYPLKVN 1bd0A 29 :PDDTHIMAVVKAN T0547 89 :QYPGFVKNLVKLGKD 1bd0A 46 :GDVQVARTALEAGAS T0547 107 :GLEAGSKAELLLAMAYNNEG 1bd0A 61 :RLAVAFLDEALALREKGIEA T0547 128 :PITVNGFKDRELINIGF 1bd0A 81 :PILVLGASRPADAALAA T0547 150 :GHNITLTIEGLNELEAIIDIA 1bd0A 98 :QQRIALTVFRSDWLEEASALY T0547 173 :RFKPKPNIGLRVRLH 1bd0A 119 :SGPFPIHFHLKMDTG T0547 201 :NSKFGLTSTE 1bd0A 134 :MGRLGVKDEE T0547 211 :LIEAVNLLKENKLLE 1bd0A 145 :TKRIVALIERHPHFV T0547 227 :FTMIHFHLGSQI 1bd0A 160 :LEGLYTHFATAD T0547 239 :TEIHPLKKALNEAGNIYTEL 1bd0A 173 :VNTDYFSYQYTRFLHMLEWL T0547 263 :AKNLKAINLGGGLAVEYSQ 1bd0A 193 :PSRPPLVHCANSAASLRFP T0547 284 :N 1bd0A 212 :D T0547 289 :NYTLREYANDVVFILK 1bd0A 214 :TFNMVRFGIAMYGLAP T0547 308 :EQKKDLEPDIFIESGRFVAAN 1bd0A 230 :SPGIKPLLPYPLKEAFSLHSR T0547 386 :ESILTLFDLG 1bd0A 274 :EEWIGTIPIG T0547 537 :IISINEKGYEVEGIIEAQSILDTLE 1bd0A 296 :HVLVDGQKAPIVGRICMDQCMIRLP T0547 563 :LDYDIHAIMDILNERISNSKLVNDKQ 1bd0A 321 :GPLPVGTKVTLIGRQGDEVISIDDVA T0547 589 :KKHILGELYLFLNDNGYLKSIGV 1bd0A 349 :LETINYEVPCTISYRVPRIFFRH Number of specific fragments extracted= 19 number of extra gaps= 0 total=1865 Will force an alignment to be made, even if fragment is small Number of alignments=81 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 1bd0A 4 :FHRDTWAEVDLDAIYDNVENLRRLL T0547 76 :KGGFNAVYPLKVN 1bd0A 29 :PDDTHIMAVVKAN T0547 89 :QYPGFVKNLVKLGKD 1bd0A 46 :GDVQVARTALEAGAS T0547 107 :GLEAGSKAELLLAMAYNNEG 1bd0A 61 :RLAVAFLDEALALREKGIEA T0547 128 :PITVNGFKDRELINIGF 1bd0A 81 :PILVLGASRPADAALAA T0547 150 :GHNITLTIEGLNELEAIIDIA 1bd0A 98 :QQRIALTVFRSDWLEEASALY T0547 173 :RFKPKPNIGLRVRLH 1bd0A 119 :SGPFPIHFHLKMDTG T0547 201 :NSKFGLTSTE 1bd0A 134 :MGRLGVKDEE T0547 211 :LIEAVNLLKENKLLE 1bd0A 145 :TKRIVALIERHPHFV T0547 227 :FTMIHFHLGSQI 1bd0A 160 :LEGLYTHFATAD T0547 239 :TEIHPLKKALNEAGNIYTEL 1bd0A 173 :VNTDYFSYQYTRFLHMLEWL T0547 263 :AKNLKAINLGGGLAVEYSQ 1bd0A 193 :PSRPPLVHCANSAASLRFP T0547 284 :N 1bd0A 212 :D T0547 289 :NYTLREYANDVVFILK 1bd0A 214 :TFNMVRFGIAMYGLAP T0547 308 :EQKKDLEPDIFIESGRFVAAN 1bd0A 230 :SPGIKPLLPYPLKEAFSLHSR T0547 349 :LILKKQNPKL 1bd0A 251 :LVHVKKLQPG T0547 361 :ELYDL 1bd0A 261 :EKVSY Number of specific fragments extracted= 17 number of extra gaps= 0 total=1882 Will force an alignment to be made, even if fragment is small Number of alignments=82 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 43 :YKG 1bd0A 4 :FHR T0547 52 :PHLIQKQIENIYGNFNKARKEFGY 1bd0A 7 :DTWAEVDLDAIYDNVENLRRLLPD T0547 78 :GFNAVYPLKVNQ 1bd0A 31 :DTHIMAVVKANA T0547 90 :YPGFVKNLVKLG 1bd0A 47 :DVQVARTALEAG T0547 106 :YGLEAGSKAELLLAMAYNN 1bd0A 60 :SRLAVAFLDEALALREKGI T0547 126 :GAPITVNGFKDRE 1bd0A 79 :EAPILVLGASRPA T0547 141 :NIGFIAAE 1bd0A 92 :DAALAAQQ T0547 152 :NITLTIEGLNELEAIIDIAKE 1bd0A 100 :RIALTVFRSDWLEEASALYSG T0547 175 :KPKPNIGLRVR 1bd0A 121 :PFPIHFHLKMD T0547 197 :SGG 1bd0A 132 :TGM T0547 202 :SKFGL 1bd0A 135 :GRLGV T0547 207 :TSTELIEAVNLLKENKLL 1bd0A 141 :DEEETKRIVALIERHPHF T0547 226 :QFTMIHFHLG 1bd0A 159 :VLEGLYTHFA T0547 236 :SQITEIHPLKKALNEAGNIYTEL 1bd0A 170 :ADEVNTDYFSYQYTRFLHMLEWL T0547 263 :AKNLKAINLGGGLAVEYSQ 1bd0A 193 :PSRPPLVHCANSAASLRFP T0547 284 :NE 1bd0A 212 :DR T0547 289 :NYTLREYANDVVFILKNI 1bd0A 214 :TFNMVRFGIAMYGLAPSP T0547 314 :EPDIFIESG 1bd0A 232 :GIKPLLPYP T0547 326 :AANHAVLIAPVLELFSQEY 1bd0A 241 :LKEAFSLHSRLVHVKKLQP T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPSNALE 1bd0A 266 :GATYTAQTEEWIGTIPIGYADGWLRRLQHFHV T0547 539 :SINEKGYEVEGIIEAQSILDTLE 1bd0A 298 :LVDGQKAPIVGRICMDQCMIRLP T0547 563 :LDYDIHAIMDILNERISNSKLVNDKQ 1bd0A 321 :GPLPVGTKVTLIGRQGDEVISIDDVA T0547 589 :KKHILGELYLFLNDNGYLKSIGV 1bd0A 349 :LETINYEVPCTISYRVPRIFFRH Number of specific fragments extracted= 23 number of extra gaps= 0 total=1905 Will force an alignment to be made, even if fragment is small Number of alignments=83 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 57 :KQIENIYGNFNKARKEFGY 1bd0A 12 :VDLDAIYDNVENLRRLLPD T0547 78 :GFNAVYPLKVNQ 1bd0A 31 :DTHIMAVVKANA T0547 90 :YPGFVKNLVKLG 1bd0A 47 :DVQVARTALEAG T0547 106 :YGLEAGSKAELLLAMAYNN 1bd0A 60 :SRLAVAFLDEALALREKGI T0547 126 :GAPITVNGFKDRE 1bd0A 79 :EAPILVLGASRPA T0547 141 :NIGFIAAE 1bd0A 92 :DAALAAQQ T0547 152 :NITLTIEGLNELEAIIDIAKE 1bd0A 100 :RIALTVFRSDWLEEASALYSG T0547 175 :KPKPNIGLRVR 1bd0A 121 :PFPIHFHLKMD T0547 197 :SGG 1bd0A 132 :TGM T0547 202 :SKFGL 1bd0A 135 :GRLGV T0547 207 :TSTELIEAVNLLKENKLL 1bd0A 141 :DEEETKRIVALIERHPHF T0547 226 :QFTMIHFHLG 1bd0A 159 :VLEGLYTHFA T0547 236 :SQITEIHPLKKALNEAGNIYTEL 1bd0A 170 :ADEVNTDYFSYQYTRFLHMLEWL T0547 263 :AKNLKAINLGGGLAVEYSQ 1bd0A 193 :PSRPPLVHCANSAASLRFP T0547 284 :NE 1bd0A 212 :DR T0547 289 :NYTLREYANDVVFILKNI 1bd0A 214 :TFNMVRFGIAMYGLAPSP T0547 314 :EPDIFIESG 1bd0A 232 :GIKPLLPYP T0547 326 :AANHAVLIAPVLELFSQEY 1bd0A 241 :LKEAFSLHSRLVHVKKLQP T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHL 1bd0A 266 :GATYTAQTEEWIGTIPIGYADGWLRRLQHFHVLVDGQKAPI T0547 386 :ESILTLFDLGYVDLQDRSNAEILTHLIT 1bd0A 326 :GTKVTLIGRQGDEVISIDDVARHLETIN Number of specific fragments extracted= 20 number of extra gaps= 0 total=1925 Will force an alignment to be made, even if fragment is small Number of alignments=84 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 1 :M 1bd0A 2 :N T0547 15 :IIKNGKVCIN 1bd0A 4 :FHRDTWAEVD T0547 59 :IENIYGNFNKARKEFG 1bd0A 14 :LDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGKDYN 1bd0A 30 :DDTHIMAVVKANAYGHGDVQVARTALEAG T0547 117 :LLAMAYNNEGAPITVNGFKDRELINIGF 1bd0A 61 :RLAVAFLDEALALREKGIEAPILVLGAS T0547 145 :IAAEMGHNITLTIEGLNELEAIIDIA 1bd0A 93 :AALAAQQRIALTVFRSDWLEEASALY T0547 173 :RFKPKPNIGLRVRL 1bd0A 119 :SGPFPIHFHLKMDT T0547 202 :SKFGLTSTE 1bd0A 135 :GRLGVKDEE T0547 211 :LIEAVNLLKENKLLEQFTMIHFHLGSQITEI 1bd0A 146 :KRIVALIERHPHFVLEGLYTHFATADEVNTD T0547 243 :PLKKALNEAGNIYTEL 1bd0A 177 :YFSYQYTRFLHMLEWL T0547 260 :KMGAKNLKAINLGGGLAVEYSQFKNE 1bd0A 193 :PSRPPLVHCANSAASLRFPDRTFNMV T0547 325 :VAANHAVLIAPVLELFSQ 1bd0A 233 :IKPLLPYPLKEAFSLHSR T0547 365 :LYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAE 1bd0A 253 :HVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQH T0547 408 :LTHLITKKAILLLGDKQNPADLLAIQDEVQE 1bd0A 295 :FHVLVDGQKAPIVGRICMDQCMIRLPGPLPV T0547 544 :GYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERI 1bd0A 333 :GRQGDEVISIDDVARHLETINYEVPCTISYRVPRI Number of specific fragments extracted= 15 number of extra gaps= 0 total=1940 Will force an alignment to be made, even if fragment is small Number of alignments=85 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 106 :YGLEAGSKAELLLA 1bd0A 43 :YGHGDVQVARTALE T0547 120 :MAYNNEGAPITVNGFKDRELINIGFI 1bd0A 64 :VAFLDEALALREKGIEAPILVLGASR T0547 146 :AAEMGHNITLTIEGLNELEAIIDIA 1bd0A 94 :ALAAQQRIALTVFRSDWLEEASALY T0547 173 :RFKPKPNIGLRVR 1bd0A 119 :SGPFPIHFHLKMD Number of specific fragments extracted= 4 number of extra gaps= 0 total=1944 Will force an alignment to be made, even if fragment is small Number of alignments=86 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)M2 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)N585 because last residue in template chain is (1bd0A)G382 T0547 3 :DYGIDIWGN 1bd0A 3 :DFHRDTWAE T0547 50 :RFPHLIQKQIENIYGNFN 1bd0A 12 :VDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKVNQ 1bd0A 30 :DDTHIMAVVKANA T0547 90 :YPGFVKNLVKLGK 1bd0A 47 :DVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFK 1bd0A 60 :SRLAVAFLDEALALREKGIEAPILVLGASR T0547 139 :LINIGF 1bd0A 90 :PADAAL T0547 146 :AAEMGHNI 1bd0A 96 :AAQQRIAL T0547 156 :TIEGLNELEAIIDIAKE 1bd0A 104 :TVFRSDWLEEASALYSG T0547 177 :KPNIGLRVRLH 1bd0A 121 :PFPIHFHLKMD T0547 188 :SAG 1bd0A 133 :GMG T0547 203 :KFGL 1bd0A 136 :RLGV T0547 207 :TSTELIEAVNLLKENKLL 1bd0A 141 :DEEETKRIVALIERHPHF T0547 226 :QFTMIHFHLGS 1bd0A 159 :VLEGLYTHFAT T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAK 1bd0A 171 :DEVNTDYFSYQYTRFLHMLEWLPSRPPL T0547 266 :L 1bd0A 199 :V T0547 278 :EY 1bd0A 200 :HC T0547 282 :FKNEKSRN 1bd0A 202 :ANSAASLR T0547 291 :TLREYANDVVFILKN 1bd0A 210 :FPDRTFNMVRFGIAM T0547 315 :PDIFIESG 1bd0A 225 :YGLAPSPG T0547 324 :FVAANHAVLIAPVLELFSQEYAENKLI 1bd0A 239 :YPLKEAFSLHSRLVHVKKLQPGEKVSY T0547 352 :KKQNPK 1bd0A 266 :GATYTA T0547 362 :LYDLYKSIKPSNALE 1bd0A 272 :QTEEWIGTIPIGYAD T0547 377 :YLHDSIDHLESILTLFDLG 1bd0A 299 :VDGQKAPIVGRICMDQCMI T0547 398 :DLQ 1bd0A 318 :RLP T0547 401 :DRSNA 1bd0A 322 :PLPVG T0547 420 :LGDKQNPAD 1bd0A 327 :TKVTLIGRQ T0547 429 :LLAIQDEVQE 1bd0A 337 :DEVISIDDVA T0547 442 :VNFSLF 1bd0A 347 :RHLETI T0547 556 :ILDTLEDLDYDIHAIMDILNERISNSKLV 1bd0A 353 :NYEVPCTISYRVPRIFFRHKRIMEVRNAI Number of specific fragments extracted= 29 number of extra gaps= 0 total=1973 Will force an alignment to be made, even if fragment is small Number of alignments=87 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)D40 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)L515 because last residue in template chain is (1bd0A)G382 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNF 1bd0A 3 :DFHRDTWAEVDLDAIYDNVENLRRLL T0547 76 :KGGFNAVYPLKVNQY 1bd0A 29 :PDDTHIMAVVKANAY T0547 91 :PGFVKNLVKLGK 1bd0A 48 :VQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1bd0A 60 :SRLAVAFLDEALALREKGIE T0547 127 :APITVNGFKDR 1bd0A 80 :APILVLGASRP T0547 140 :INIGF 1bd0A 91 :ADAAL T0547 146 :AAEMG 1bd0A 96 :AAQQR T0547 153 :ITLTIEGLNELEAIIDIA 1bd0A 101 :IALTVFRSDWLEEASALY T0547 173 :RFKPKPNIGLRVRLH 1bd0A 119 :SGPFPIHFHLKMDTG T0547 202 :SKFGL 1bd0A 135 :GRLGV T0547 207 :TSTELIEAVNLLKENKLL 1bd0A 141 :DEEETKRIVALIERHPHF T0547 226 :QFTMIHFHLGS 1bd0A 159 :VLEGLYTHFAT T0547 237 :QITEIHPLKKA 1bd0A 171 :DEVNTDYFSYQ T0547 252 :GNIYTELRKMGAKNLKAINLGGGLAVEY 1bd0A 182 :YTRFLHMLEWLPSRPPLVHCANSAASLR T0547 282 :FKNE 1bd0A 210 :FPDR T0547 286 :KSR 1bd0A 227 :LAP T0547 291 :TL 1bd0A 230 :SP T0547 307 :AEQKK 1bd0A 232 :GIKPL T0547 315 :PDIFIESGRFVAA 1bd0A 237 :LPYPLKEAFSLHS T0547 335 :PVLELFSQEYA 1bd0A 250 :RLVHVKKLQPG T0547 349 :LILKKQNPKLIDE 1bd0A 261 :EKVSYGATYTAQT T0547 362 :LY 1bd0A 275 :EW T0547 367 :KSIKPSNALE 1bd0A 277 :IGTIPIGYAD T0547 381 :SIDHLESILT 1bd0A 303 :KAPIVGRICM T0547 393 :DLGYVDLQ 1bd0A 313 :DQCMIRLP T0547 401 :DRSNAEILTHLITKKAILLLG 1bd0A 322 :PLPVGTKVTLIGRQGDEVISI T0547 434 :DEVQERY 1bd0A 343 :DDVARHL T0547 449 :SMPDFWGLEQNFPIMP 1bd0A 350 :ETINYEVPCTISYRVP T0547 490 :SYSKDKPLFLHDVD 1bd0A 366 :RIFFRHKRIMEVRN T0547 513 :FF 1bd0A 380 :AI Number of specific fragments extracted= 30 number of extra gaps= 0 total=2003 Will force an alignment to be made, even if fragment is small Number of alignments=88 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)D40 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)G455 because last residue in template chain is (1bd0A)G382 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFN 1bd0A 3 :DFHRDTWAEVDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKVN 1bd0A 30 :DDTHIMAVVKAN T0547 89 :QYPGFVKNLVKLGK 1bd0A 46 :GDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1bd0A 60 :SRLAVAFLDEALALREKGIEA T0547 128 :PITVNGFKDRE 1bd0A 81 :PILVLGASRPA T0547 141 :NIGF 1bd0A 92 :DAAL T0547 146 :AAEMG 1bd0A 96 :AAQQR T0547 153 :ITLTIEGLNELEAIIDIAK 1bd0A 101 :IALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLH 1bd0A 120 :GPFPIHFHLKMDTG T0547 202 :SKFGLTS 1bd0A 135 :GRLGVKD T0547 209 :TELIEAVNLLKENKLL 1bd0A 143 :EETKRIVALIERHPHF T0547 226 :QFTMIHFHLGSQI 1bd0A 159 :VLEGLYTHFATAD T0547 239 :TEIHPLKKAL 1bd0A 173 :VNTDYFSYQY T0547 253 :NIYTELRKMGAKNLKAINLGGGLAVEY 1bd0A 183 :TRFLHMLEWLPSRPPLVHCANSAASLR T0547 291 :TLREYANDV 1bd0A 210 :FPDRTFNMV T0547 301 :FILKNIAE 1bd0A 227 :LAPSPGIK T0547 313 :LEPDIFIESGRFVAA 1bd0A 235 :PLLPYPLKEAFSLHS T0547 335 :PVLELFSQEYA 1bd0A 250 :RLVHVKKLQPG T0547 349 :LILKKQNPKLIDE 1bd0A 261 :EKVSYGATYTAQT T0547 362 :LYDLYKSIKPS 1bd0A 275 :EWIGTIPIGYA T0547 374 :ALE 1bd0A 287 :GWL T0547 377 :YLHDSIDHLESILT 1bd0A 299 :VDGQKAPIVGRICM T0547 393 :DLGYVDL 1bd0A 313 :DQCMIRL T0547 400 :QDRSNAEILTHLITKKAILLLGDKQN 1bd0A 321 :GPLPVGTKVTLIGRQGDEVISIDDVA T0547 426 :PAD 1bd0A 348 :HLE T0547 429 :LLAIQDEVQERY 1bd0A 353 :NYEVPCTISYRV T0547 441 :LVNFSLFQSMPDFW 1bd0A 368 :FFRHKRIMEVRNAI Number of specific fragments extracted= 27 number of extra gaps= 0 total=2030 Will force an alignment to be made, even if fragment is small Number of alignments=89 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)D40 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)G455 because last residue in template chain is (1bd0A)G382 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFN 1bd0A 3 :DFHRDTWAEVDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKVN 1bd0A 30 :DDTHIMAVVKAN T0547 89 :QYPGFVKNLVKLGK 1bd0A 46 :GDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1bd0A 60 :SRLAVAFLDEALALREKGIEA T0547 128 :PITVNGFKDRE 1bd0A 81 :PILVLGASRPA T0547 141 :NIGF 1bd0A 92 :DAAL T0547 146 :AAEMGH 1bd0A 96 :AAQQRI T0547 153 :I 1bd0A 102 :A T0547 155 :LTIEGLNELEAIIDIAK 1bd0A 103 :LTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLH 1bd0A 120 :GPFPIHFHLKMDTG T0547 202 :SKFGL 1bd0A 135 :GRLGV T0547 207 :TSTELIEAVNLLKENKLL 1bd0A 141 :DEEETKRIVALIERHPHF T0547 226 :QFTMIHFHLGSQ 1bd0A 159 :VLEGLYTHFATA T0547 238 :ITEIHPLKKALNEAGNIYTEL 1bd0A 172 :EVNTDYFSYQYTRFLHMLEWL T0547 263 :AKNLKAINLGGGLAVEY 1bd0A 193 :PSRPPLVHCANSAASLR T0547 280 :SQFKNEKS 1bd0A 222 :IAMYGLAP T0547 291 :TLRE 1bd0A 230 :SPGI T0547 309 :QKK 1bd0A 234 :KPL T0547 315 :PDIFIESGRFVAA 1bd0A 237 :LPYPLKEAFSLHS T0547 335 :PVLELFSQEY 1bd0A 250 :RLVHVKKLQP T0547 348 :KLILKKQNPKLIDE 1bd0A 260 :GEKVSYGATYTAQT T0547 362 :L 1bd0A 275 :E T0547 366 :YKSIKPSNALE 1bd0A 276 :WIGTIPIGYAD T0547 377 :YLHDSIDHLESILT 1bd0A 299 :VDGQKAPIVGRICM T0547 393 :DLGYVDLQ 1bd0A 313 :DQCMIRLP T0547 401 :DRSNAEILTHLITKKAILLLGD 1bd0A 322 :PLPVGTKVTLIGRQGDEVISID T0547 423 :KQNPADLLAIQDEVQERYLVNFSLFQSMPDFW 1bd0A 350 :ETINYEVPCTISYRVPRIFFRHKRIMEVRNAI Number of specific fragments extracted= 27 number of extra gaps= 0 total=2057 Will force an alignment to be made, even if fragment is small Number of alignments=90 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)D40 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)S555 because last residue in template chain is (1bd0A)G382 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFN 1bd0A 3 :DFHRDTWAEVDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKVN 1bd0A 30 :DDTHIMAVVKAN T0547 89 :QYPGFVKNLVKLGK 1bd0A 46 :GDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1bd0A 60 :SRLAVAFLDEALALREKGIEA T0547 128 :PITVNGFKDRE 1bd0A 81 :PILVLGASRPA T0547 141 :NIGF 1bd0A 92 :DAAL T0547 146 :AAEMG 1bd0A 96 :AAQQR T0547 153 :ITLTIEGLNELEAIIDIAK 1bd0A 101 :IALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLH 1bd0A 120 :GPFPIHFHLKMDTG T0547 202 :SKFGLTS 1bd0A 135 :GRLGVKD T0547 209 :TELIEAVNLLKENKLL 1bd0A 143 :EETKRIVALIERHPHF T0547 226 :QFTMIHFHLGSQI 1bd0A 159 :VLEGLYTHFATAD T0547 239 :TEIHPLKKA 1bd0A 173 :VNTDYFSYQ T0547 252 :GNIYTELRKMGAKNLKAINLGGGLAVEY 1bd0A 182 :YTRFLHMLEWLPSRPPLVHCANSAASLR T0547 282 :FKNE 1bd0A 210 :FPDR T0547 287 :SR 1bd0A 214 :TF T0547 313 :L 1bd0A 216 :N T0547 318 :FIESGRFVAA 1bd0A 217 :MVRFGIAMYG T0547 328 :NHAVLIAPVLELFSQ 1bd0A 243 :EAFSLHSRLVHVKKL T0547 343 :EYAENKLILKKQNPKLIDE 1bd0A 272 :QTEEWIGTIPIGYADGWLR T0547 362 :LYDL 1bd0A 292 :LQHF T0547 378 :LHDSIDHLESILT 1bd0A 300 :DGQKAPIVGRICM T0547 393 :DLGYVDL 1bd0A 313 :DQCMIRL T0547 400 :QDRSNAEILTHLITKKAILL 1bd0A 321 :GPLPVGTKVTLIGRQGDEVI T0547 428 :DLLAIQDEVQERY 1bd0A 341 :SIDDVARHLETIN T0547 448 :QSM 1bd0A 354 :YEV T0547 453 :FWGLEQNFP 1bd0A 357 :PCTISYRVP T0547 537 :IISINEK 1bd0A 366 :RIFFRHK T0547 546 :EVEGIIEAQ 1bd0A 373 :RIMEVRNAI Number of specific fragments extracted= 29 number of extra gaps= 0 total=2086 Will force an alignment to be made, even if fragment is small Number of alignments=91 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)D40 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)S555 because last residue in template chain is (1bd0A)G382 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNF 1bd0A 3 :DFHRDTWAEVDLDAIYDNVENLRRLL T0547 76 :KGGFNAVYPLKVN 1bd0A 29 :PDDTHIMAVVKAN T0547 89 :QYPGFVKNLVKLGK 1bd0A 46 :GDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1bd0A 60 :SRLAVAFLDEALALREKGIEAP T0547 129 :ITVNGFKDR 1bd0A 82 :ILVLGASRP T0547 140 :INIGF 1bd0A 91 :ADAAL T0547 146 :AAEMG 1bd0A 96 :AAQQR T0547 153 :ITLTIEGLNELEAIIDIAK 1bd0A 101 :IALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLH 1bd0A 120 :GPFPIHFHLKMDTG T0547 202 :SKFGLTST 1bd0A 135 :GRLGVKDE T0547 210 :ELIEAVNLLKENKLL 1bd0A 144 :ETKRIVALIERHPHF T0547 226 :QFTMIHFHLGSQ 1bd0A 159 :VLEGLYTHFATA T0547 238 :ITEIHPLKKA 1bd0A 172 :EVNTDYFSYQ T0547 252 :GNIYTELRKMGAKNLKAINLGGGLAVEY 1bd0A 182 :YTRFLHMLEWLPSRPPLVHCANSAASLR T0547 280 :SQFKNEKSR 1bd0A 222 :IAMYGLAPS T0547 306 :IAEQKKDLE 1bd0A 231 :PGIKPLLPY T0547 318 :FIESGRFVAA 1bd0A 240 :PLKEAFSLHS T0547 335 :PVLELFSQ 1bd0A 250 :RLVHVKKL T0547 343 :EYAENKLILKKQNPKL 1bd0A 272 :QTEEWIGTIPIGYADG T0547 370 :KPSNALEYL 1bd0A 288 :WLRRLQHFH T0547 379 :HDSIDHLESIL 1bd0A 301 :GQKAPIVGRIC T0547 392 :FDLGYVDLQ 1bd0A 312 :MDQCMIRLP T0547 401 :DRSNAEILTHLITKKAILLLG 1bd0A 322 :PLPVGTKVTLIGRQGDEVISI T0547 428 :D 1bd0A 343 :D T0547 430 :LAIQ 1bd0A 344 :DVAR T0547 441 :LVNFSLFQS 1bd0A 348 :HLETINYEV T0547 453 :FWGLEQNFP 1bd0A 357 :PCTISYRVP T0547 537 :IISINEK 1bd0A 366 :RIFFRHK T0547 546 :EVEGIIEAQ 1bd0A 373 :RIMEVRNAI Number of specific fragments extracted= 29 number of extra gaps= 0 total=2115 Will force an alignment to be made, even if fragment is small Number of alignments=92 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 50 :RFPHLIQKQIENIYGNFN 1bd0A 12 :VDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKVNQ 1bd0A 30 :DDTHIMAVVKANA T0547 90 :YPGFVKNLVKLGK 1bd0A 47 :DVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFK 1bd0A 60 :SRLAVAFLDEALALREKGIEAPILVLGASR T0547 139 :LINIGF 1bd0A 90 :PADAAL T0547 146 :AAEMGHNI 1bd0A 96 :AAQQRIAL T0547 156 :TIEGLNELEAIIDIAKE 1bd0A 104 :TVFRSDWLEEASALYSG T0547 177 :KPNIGLRVRLH 1bd0A 121 :PFPIHFHLKMD T0547 188 :SAG 1bd0A 133 :GMG T0547 203 :KFGL 1bd0A 136 :RLGV T0547 207 :TSTELIEAVNLLKENKLL 1bd0A 141 :DEEETKRIVALIERHPHF T0547 226 :QFTMIHFHLGS 1bd0A 159 :VLEGLYTHFAT Number of specific fragments extracted= 12 number of extra gaps= 0 total=2127 Will force an alignment to be made, even if fragment is small Number of alignments=93 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNF 1bd0A 3 :DFHRDTWAEVDLDAIYDNVENLRRLL T0547 76 :KGGFNAVYPLKVNQY 1bd0A 29 :PDDTHIMAVVKANAY T0547 91 :PGFVKNLVKLGK 1bd0A 48 :VQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1bd0A 60 :SRLAVAFLDEALALREKGIE T0547 127 :APITVNGFKDR 1bd0A 80 :APILVLGASRP T0547 140 :INIGF 1bd0A 91 :ADAAL T0547 146 :AAEMG 1bd0A 96 :AAQQR T0547 153 :ITLTIEGLNELEAIIDIA 1bd0A 101 :IALTVFRSDWLEEASALY T0547 173 :RFKPKPNIGLRVRLH 1bd0A 119 :SGPFPIHFHLKMDTG T0547 202 :SKFGL 1bd0A 135 :GRLGV T0547 207 :TSTELIEAVNLLKENKLL 1bd0A 141 :DEEETKRIVALIERHPHF T0547 226 :QFTMIHFHLGS 1bd0A 159 :VLEGLYTHFAT T0547 237 :QITEIHPLKKA 1bd0A 171 :DEVNTDYFSYQ T0547 252 :GNIYTELRKMGAKNLKAINLGGGLAVEY 1bd0A 182 :YTRFLHMLEWLPSRPPLVHCANSAASLR T0547 282 :FKNE 1bd0A 210 :FPDR T0547 286 :KSR 1bd0A 227 :LAP T0547 291 :TL 1bd0A 230 :SP T0547 307 :AEQKK 1bd0A 232 :GIKPL T0547 315 :PDIFIESGRFVAA 1bd0A 237 :LPYPLKEAFSLHS T0547 335 :PVLELFSQEYA 1bd0A 250 :RLVHVKKLQPG T0547 349 :LILKKQNPKLIDE 1bd0A 261 :EKVSYGATYTAQT T0547 362 :LY 1bd0A 275 :EW T0547 367 :KSIKPSNALE 1bd0A 277 :IGTIPIGYAD T0547 381 :SIDHLESILT 1bd0A 303 :KAPIVGRICM T0547 393 :DLGYVDLQ 1bd0A 313 :DQCMIRLP T0547 401 :DRSNAEILTHLITKKAILLLG 1bd0A 322 :PLPVGTKVTLIGRQGDEVISI T0547 434 :DEVQERY 1bd0A 343 :DDVARHL T0547 449 :SMPDFWGLEQNFPIMP 1bd0A 350 :ETINYEVPCTISYRVP T0547 490 :SYSKDKPLFLHDVD 1bd0A 366 :RIFFRHKRIMEVRN Number of specific fragments extracted= 29 number of extra gaps= 0 total=2156 Will force an alignment to be made, even if fragment is small Number of alignments=94 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)D40 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)G455 because last residue in template chain is (1bd0A)G382 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFN 1bd0A 3 :DFHRDTWAEVDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKVN 1bd0A 30 :DDTHIMAVVKAN T0547 89 :QYPGFVKNLVKLGK 1bd0A 46 :GDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1bd0A 60 :SRLAVAFLDEALALREKGIEA T0547 128 :PITVNGFKDRE 1bd0A 81 :PILVLGASRPA T0547 141 :NIGF 1bd0A 92 :DAAL T0547 146 :AAEMG 1bd0A 96 :AAQQR T0547 153 :ITLTIEGLNELEAIIDIAK 1bd0A 101 :IALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLH 1bd0A 120 :GPFPIHFHLKMDTG T0547 202 :SKFGLTS 1bd0A 135 :GRLGVKD T0547 209 :TELIEAVNLLKENKLL 1bd0A 143 :EETKRIVALIERHPHF T0547 226 :QFTMIHFHLGSQI 1bd0A 159 :VLEGLYTHFATAD T0547 239 :TEIHPLKKAL 1bd0A 173 :VNTDYFSYQY T0547 253 :NIYTELRKMGAKNLKAINLGGGLAVEY 1bd0A 183 :TRFLHMLEWLPSRPPLVHCANSAASLR T0547 291 :TLREYANDV 1bd0A 210 :FPDRTFNMV T0547 301 :FILKNIAE 1bd0A 227 :LAPSPGIK T0547 313 :LEPDIFIESGRFVAA 1bd0A 235 :PLLPYPLKEAFSLHS T0547 335 :PVLELFSQEYA 1bd0A 250 :RLVHVKKLQPG T0547 349 :LILKKQNPKLIDE 1bd0A 261 :EKVSYGATYTAQT T0547 362 :LYDLYKSIKPS 1bd0A 275 :EWIGTIPIGYA T0547 374 :ALE 1bd0A 287 :GWL T0547 377 :YLHDSIDHLESILT 1bd0A 299 :VDGQKAPIVGRICM T0547 393 :DLGYVDL 1bd0A 313 :DQCMIRL T0547 400 :QDRSNAEILTHLITKKAILLLGDKQN 1bd0A 321 :GPLPVGTKVTLIGRQGDEVISIDDVA T0547 426 :PAD 1bd0A 348 :HLE T0547 429 :LLAIQDEVQERY 1bd0A 353 :NYEVPCTISYRV T0547 441 :LVNFSLFQSMPDFW 1bd0A 368 :FFRHKRIMEVRNAI Number of specific fragments extracted= 27 number of extra gaps= 0 total=2183 Will force an alignment to be made, even if fragment is small Number of alignments=95 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)G455 because last residue in template chain is (1bd0A)G382 T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFN 1bd0A 4 :FHRDTWAEVDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKVN 1bd0A 30 :DDTHIMAVVKAN T0547 89 :QYPGFVKNLVKLGK 1bd0A 46 :GDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1bd0A 60 :SRLAVAFLDEALALREKGIEA T0547 128 :PITVNGFKDRE 1bd0A 81 :PILVLGASRPA T0547 141 :NIGF 1bd0A 92 :DAAL T0547 146 :AAEMGH 1bd0A 96 :AAQQRI T0547 153 :I 1bd0A 102 :A T0547 155 :LTIEGLNELEAIIDIAK 1bd0A 103 :LTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLH 1bd0A 120 :GPFPIHFHLKMDTG T0547 202 :SKFGL 1bd0A 135 :GRLGV T0547 207 :TSTELIEAVNLLKENKLL 1bd0A 141 :DEEETKRIVALIERHPHF T0547 226 :QFTMIHFHLGSQ 1bd0A 159 :VLEGLYTHFATA T0547 238 :ITEIHPLKKALNEAGNIYTEL 1bd0A 172 :EVNTDYFSYQYTRFLHMLEWL T0547 263 :AKNLKAINLGGGLAVEY 1bd0A 193 :PSRPPLVHCANSAASLR T0547 280 :SQFKNEKS 1bd0A 222 :IAMYGLAP T0547 291 :TLRE 1bd0A 230 :SPGI T0547 309 :QKK 1bd0A 234 :KPL T0547 315 :PDIFIESGRFVAA 1bd0A 237 :LPYPLKEAFSLHS T0547 335 :PVLELFSQEY 1bd0A 250 :RLVHVKKLQP T0547 348 :KLILKKQNPKLIDE 1bd0A 260 :GEKVSYGATYTAQT T0547 362 :L 1bd0A 275 :E T0547 366 :YKSIKPSNALE 1bd0A 276 :WIGTIPIGYAD T0547 377 :YLHDSIDHLESILT 1bd0A 299 :VDGQKAPIVGRICM T0547 393 :DLGYVDLQ 1bd0A 313 :DQCMIRLP T0547 401 :DRSNAEILTHLITKKAILLLGD 1bd0A 322 :PLPVGTKVTLIGRQGDEVISID T0547 423 :KQNPADLLAIQDEVQERYLVNFSLFQSMPDFW 1bd0A 350 :ETINYEVPCTISYRVPRIFFRHKRIMEVRNAI Number of specific fragments extracted= 27 number of extra gaps= 0 total=2210 Will force an alignment to be made, even if fragment is small Number of alignments=96 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)S555 because last residue in template chain is (1bd0A)G382 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 1bd0A 5 :HRDTWAEVDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKVN 1bd0A 30 :DDTHIMAVVKAN T0547 89 :QYPGFVKNLVKLGK 1bd0A 46 :GDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1bd0A 60 :SRLAVAFLDEALALREKGIEA T0547 128 :PITVNGFKDRE 1bd0A 81 :PILVLGASRPA T0547 141 :NIGF 1bd0A 92 :DAAL T0547 146 :AAEMG 1bd0A 96 :AAQQR T0547 153 :ITLTIEGLNELEAIIDIAK 1bd0A 101 :IALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLH 1bd0A 120 :GPFPIHFHLKMDTG T0547 202 :SKFGLTS 1bd0A 135 :GRLGVKD T0547 209 :TELIEAVNLLKENKLL 1bd0A 143 :EETKRIVALIERHPHF T0547 226 :QFTMIHFHLGSQI 1bd0A 159 :VLEGLYTHFATAD T0547 239 :TEIHPLKKA 1bd0A 173 :VNTDYFSYQ T0547 252 :GNIYTELRKMGAKNLKAINLGGGLAVEY 1bd0A 182 :YTRFLHMLEWLPSRPPLVHCANSAASLR T0547 282 :FKNE 1bd0A 210 :FPDR T0547 287 :SR 1bd0A 214 :TF T0547 313 :L 1bd0A 216 :N T0547 318 :FIESGRFVAA 1bd0A 217 :MVRFGIAMYG T0547 328 :NHAVLIAPVLELFSQ 1bd0A 243 :EAFSLHSRLVHVKKL T0547 343 :EYAENKLILKKQNPKLIDE 1bd0A 272 :QTEEWIGTIPIGYADGWLR T0547 362 :LYDL 1bd0A 292 :LQHF T0547 378 :LHDSIDHLESILT 1bd0A 300 :DGQKAPIVGRICM T0547 393 :DLGYVDL 1bd0A 313 :DQCMIRL T0547 400 :QDRSNAEILTHLITKKAILL 1bd0A 321 :GPLPVGTKVTLIGRQGDEVI T0547 428 :DLLAIQDEVQERY 1bd0A 341 :SIDDVARHLETIN T0547 448 :QSM 1bd0A 354 :YEV T0547 453 :FWGLEQNFP 1bd0A 357 :PCTISYRVP T0547 537 :IISINEK 1bd0A 366 :RIFFRHK T0547 546 :EVEGIIEAQ 1bd0A 373 :RIMEVRNAI Number of specific fragments extracted= 29 number of extra gaps= 0 total=2239 Will force an alignment to be made, even if fragment is small Number of alignments=97 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 1bd0A 4 :FHRDTWAEVDLDAIYDNVENLRRLL T0547 76 :KGGFNAVYPLKVN 1bd0A 29 :PDDTHIMAVVKAN T0547 89 :QYPGFVKNLVKLGK 1bd0A 46 :GDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1bd0A 60 :SRLAVAFLDEALALREKGIEAP T0547 129 :ITVNGFKDR 1bd0A 82 :ILVLGASRP T0547 140 :INIGF 1bd0A 91 :ADAAL T0547 146 :AAEMG 1bd0A 96 :AAQQR T0547 153 :ITLTIEGLNELEAIIDIAK 1bd0A 101 :IALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLH 1bd0A 120 :GPFPIHFHLKMDTG T0547 202 :SKFGLTST 1bd0A 135 :GRLGVKDE T0547 210 :ELIEAVNLLKENKLL 1bd0A 144 :ETKRIVALIERHPHF T0547 226 :QFTMIHFHLGSQ 1bd0A 159 :VLEGLYTHFATA T0547 238 :ITEIHPLKKA 1bd0A 172 :EVNTDYFSYQ T0547 252 :GNIYTELRKMGAKNLKAINLGGGLAVEY 1bd0A 182 :YTRFLHMLEWLPSRPPLVHCANSAASLR T0547 280 :SQFKNEKSR 1bd0A 222 :IAMYGLAPS T0547 306 :IAEQKKDLE 1bd0A 231 :PGIKPLLPY T0547 318 :FIESGRFVAA 1bd0A 240 :PLKEAFSLHS T0547 335 :PVLELFSQ 1bd0A 250 :RLVHVKKL T0547 343 :EYAENKLILKKQNPKL 1bd0A 272 :QTEEWIGTIPIGYADG T0547 370 :KPSNALEYL 1bd0A 288 :WLRRLQHFH T0547 379 :HDSIDHLESIL 1bd0A 301 :GQKAPIVGRIC T0547 392 :FDLGYVDLQ 1bd0A 312 :MDQCMIRLP T0547 401 :DRSNAEILTHLITKKAILLLG 1bd0A 322 :PLPVGTKVTLIGRQGDEVISI T0547 428 :D 1bd0A 343 :D T0547 430 :LAIQ 1bd0A 344 :DVAR T0547 441 :LVNFSLFQS 1bd0A 348 :HLETINYEV T0547 453 :FWGLEQNFP 1bd0A 357 :PCTISYRVP T0547 537 :IISINEK 1bd0A 366 :RIFFRHK T0547 546 :EVEGIIE 1bd0A 373 :RIMEVRN Number of specific fragments extracted= 29 number of extra gaps= 0 total=2268 Will force an alignment to be made, even if fragment is small Number of alignments=98 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)M2 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)N585 because last residue in template chain is (1bd0A)G382 T0547 3 :DYGIDIWG 1bd0A 3 :DFHRDTWA T0547 49 :LRFPHLIQKQIENIYGNFN 1bd0A 11 :EVDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKVNQYPG 1bd0A 30 :DDTHIMAVVKANAYGH T0547 93 :FVKNLVKLGK 1bd0A 50 :VARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 1bd0A 60 :SRLAVAFLDEALALREKGIEAPILVL T0547 133 :GFKDRELINIGF 1bd0A 86 :GASRPADAALAA T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1bd0A 98 :QQRIALTVFRSDWLEEASALYSG T0547 177 :KPNIGLRVRLHSAGV 1bd0A 121 :PFPIHFHLKMDTGMG T0547 203 :KFGL 1bd0A 136 :RLGV T0547 207 :TSTELIEAVNLLKENKLLEQFT 1bd0A 141 :DEEETKRIVALIERHPHFVLEG T0547 230 :IHFHLGS 1bd0A 163 :LYTHFAT T0547 237 :QITEIHPLKKALNEAGNIYTEL 1bd0A 171 :DEVNTDYFSYQYTRFLHMLEWL T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAE 1bd0A 193 :PSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLP T0547 324 :FVAANHAVLIAPVLELFSQEYAE 1bd0A 239 :YPLKEAFSLHSRLVHVKKLQPGE T0547 348 :KLILKKQNPKLIDELYDL 1bd0A 262 :KVSYGATYTAQTEEWIGT T0547 370 :KPSNALE 1bd0A 280 :IPIGYAD T0547 377 :YLHDSIDHLE 1bd0A 302 :QKAPIVGRIC T0547 389 :LTLFDLGY 1bd0A 312 :MDQCMIRL T0547 400 :Q 1bd0A 320 :P T0547 401 :DRSNAEILTH 1bd0A 322 :PLPVGTKVTL T0547 436 :VQERYLVNFSLFQSMPDFWGLE 1bd0A 332 :IGRQGDEVISIDDVARHLETIN T0547 557 :LDTLEDLDYDIHAIMDILNERISNSKLV 1bd0A 354 :YEVPCTISYRVPRIFFRHKRIMEVRNAI Number of specific fragments extracted= 22 number of extra gaps= 0 total=2290 Will force an alignment to be made, even if fragment is small Number of alignments=99 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)D41 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)Q458 because last residue in template chain is (1bd0A)G382 T0547 42 :GYKGP 1bd0A 3 :DFHRD T0547 47 :LLLRFPHLIQKQIENIYGNF 1bd0A 9 :WAEVDLDAIYDNVENLRRLL T0547 77 :G 1bd0A 29 :P T0547 78 :GFNAVYPLKVNQY 1bd0A 31 :DTHIMAVVKANAY T0547 91 :PGFVKNLVKLGK 1bd0A 48 :VQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1bd0A 60 :SRLAVAFLDEALALREKGIE T0547 127 :APITVNGFKDRELINIGF 1bd0A 80 :APILVLGASRPADAALAA T0547 148 :EMG 1bd0A 98 :QQR T0547 153 :ITLTIEGLNELEAIIDIAK 1bd0A 101 :IALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVR 1bd0A 120 :GPFPIHFHLKMD T0547 188 :SAGV 1bd0A 132 :TGMG T0547 203 :KFGL 1bd0A 136 :RLGV T0547 207 :TSTELIEAVNLLKENKLLEQFT 1bd0A 141 :DEEETKRIVALIERHPHFVLEG T0547 230 :IHFHLG 1bd0A 163 :LYTHFA T0547 236 :SQITEIHPLKKALNEAGNI 1bd0A 170 :ADEVNTDYFSYQYTRFLHM T0547 258 :LRKMGA 1bd0A 189 :LEWLPS T0547 265 :NLKAINLGGGLAVEY 1bd0A 195 :RPPLVHCANSAASLR T0547 307 :AEQKKDLEP 1bd0A 222 :IAMYGLAPS T0547 318 :FIESG 1bd0A 236 :LLPYP T0547 326 :AANHAVLIAPVLELFSQE 1bd0A 241 :LKEAFSLHSRLVHVKKLQ T0547 344 :YAE 1bd0A 274 :EEW T0547 348 :KLILKK 1bd0A 277 :IGTIPI T0547 354 :QNPKLIDELYD 1bd0A 284 :YADGWLRRLQH T0547 368 :SIKPSNA 1bd0A 295 :FHVLVDG T0547 377 :YLHDSIDHLE 1bd0A 302 :QKAPIVGRIC T0547 389 :LTLFDLGY 1bd0A 312 :MDQCMIRL T0547 399 :LQDRSNAEILTHLITKKAILLLG 1bd0A 320 :PGPLPVGTKVTLIGRQGDEVISI T0547 423 :KQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 1bd0A 347 :RHLETINYEVPCTISYRVPRIFFRHKRIMEVRNAI Number of specific fragments extracted= 28 number of extra gaps= 0 total=2318 Will force an alignment to be made, even if fragment is small Number of alignments=100 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)D41 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)Q458 because last residue in template chain is (1bd0A)G382 T0547 42 :GYKGPLLL 1bd0A 3 :DFHRDTWA T0547 50 :RFPHLIQKQIENIYGNFN 1bd0A 12 :VDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKVNQY 1bd0A 30 :DDTHIMAVVKANAY T0547 91 :PGFVKNLVKLGK 1bd0A 48 :VQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1bd0A 60 :SRLAVAFLDEALALREKGIE T0547 127 :APITVNGFKDRELINIGF 1bd0A 80 :APILVLGASRPADAALAA T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1bd0A 98 :QQRIALTVFRSDWLEEASALYSG T0547 175 :KPKPNIGLRVRL 1bd0A 121 :PFPIHFHLKMDT T0547 189 :AGV 1bd0A 133 :GMG T0547 203 :KFGL 1bd0A 136 :RLGV T0547 207 :TSTELIEAVNLLKENKLLEQFT 1bd0A 141 :DEEETKRIVALIERHPHFVLEG T0547 230 :IHFHLG 1bd0A 163 :LYTHFA T0547 236 :SQITEIHPLKKALNEAGNIYTEL 1bd0A 170 :ADEVNTDYFSYQYTRFLHMLEWL T0547 262 :GA 1bd0A 193 :PS T0547 265 :NLKAINLGGGLAVEY 1bd0A 195 :RPPLVHCANSAASLR T0547 291 :TLREYANDVVFI 1bd0A 210 :FPDRTFNMVRFG T0547 303 :LKNIAEQKKD 1bd0A 224 :MYGLAPSPGI T0547 316 :DIFIESG 1bd0A 234 :KPLLPYP T0547 326 :AANHAVLIAPVLELFSQE 1bd0A 241 :LKEAFSLHSRLVHVKKLQ T0547 344 :YAE 1bd0A 274 :EEW T0547 348 :KLILKK 1bd0A 277 :IGTIPI T0547 354 :QNPKLIDELYDLYKS 1bd0A 284 :YADGWLRRLQHFHVL T0547 377 :YLHDSIDHLE 1bd0A 302 :QKAPIVGRIC T0547 389 :LTLFDLGY 1bd0A 312 :MDQCMIRL T0547 399 :LQDRSNAEILTHLITKKAILLLGD 1bd0A 320 :PGPLPVGTKVTLIGRQGDEVISID T0547 423 :KQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 1bd0A 347 :RHLETINYEVPCTISYRVPRIFFRHKRIMEVRNAI Number of specific fragments extracted= 26 number of extra gaps= 0 total=2344 Will force an alignment to be made, even if fragment is small Number of alignments=101 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)C22 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)Q458 because last residue in template chain is (1bd0A)G382 T0547 23 :I 1bd0A 3 :D T0547 43 :YKGPL 1bd0A 4 :FHRDT T0547 48 :LLRFPHLIQKQIENIYGNF 1bd0A 10 :AEVDLDAIYDNVENLRRLL T0547 77 :G 1bd0A 29 :P T0547 78 :GFNAVYPLKVNQ 1bd0A 31 :DTHIMAVVKANA T0547 90 :YPGFVKNLVKLGK 1bd0A 47 :DVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1bd0A 60 :SRLAVAFLDEALALREKGIE T0547 127 :APITVNGFKDRELINIGF 1bd0A 80 :APILVLGASRPADAALAA T0547 148 :EMGH 1bd0A 98 :QQRI T0547 154 :TLTIEGLNELEAIIDIAKE 1bd0A 102 :ALTVFRSDWLEEASALYSG T0547 175 :KPKPNIGLRVRLHS 1bd0A 121 :PFPIHFHLKMDTGM T0547 202 :SKFGL 1bd0A 135 :GRLGV T0547 207 :TSTELIEAVNLLKENKLLEQFT 1bd0A 141 :DEEETKRIVALIERHPHFVLEG T0547 230 :IHFHLGS 1bd0A 163 :LYTHFAT T0547 237 :QITEIHPLKKALNEAGNIYTEL 1bd0A 171 :DEVNTDYFSYQYTRFLHMLEWL T0547 262 :GA 1bd0A 193 :PS T0547 265 :NLKAINLGGGLAV 1bd0A 195 :RPPLVHCANSAAS T0547 307 :AEQKKDLEP 1bd0A 222 :IAMYGLAPS T0547 316 :DIFIESG 1bd0A 234 :KPLLPYP T0547 326 :AANHAVLIAPVLELFSQE 1bd0A 241 :LKEAFSLHSRLVHVKKLQ T0547 344 :YAE 1bd0A 274 :EEW T0547 348 :KLILKK 1bd0A 277 :IGTIPI T0547 354 :QNPKLIDELYDL 1bd0A 284 :YADGWLRRLQHF T0547 369 :IKPSNA 1bd0A 296 :HVLVDG T0547 377 :YLHDSIDHLE 1bd0A 302 :QKAPIVGRIC T0547 389 :LTLFDLGY 1bd0A 312 :MDQCMIRL T0547 399 :LQDRSNAEILTHLITKKAILLLGD 1bd0A 320 :PGPLPVGTKVTLIGRQGDEVISID T0547 423 :KQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 1bd0A 347 :RHLETINYEVPCTISYRVPRIFFRHKRIMEVRNAI Number of specific fragments extracted= 28 number of extra gaps= 0 total=2372 Will force an alignment to be made, even if fragment is small Number of alignments=102 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)D41 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)S555 because last residue in template chain is (1bd0A)G382 T0547 42 :GYKGPL 1bd0A 3 :DFHRDT T0547 48 :LLRFPHLIQKQIENIYGNFN 1bd0A 10 :AEVDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKV 1bd0A 30 :DDTHIMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1bd0A 45 :HGDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1bd0A 60 :SRLAVAFLDEALALREKGIE T0547 127 :APITVNGFKDRELINIGF 1bd0A 80 :APILVLGASRPADAALAA T0547 148 :EMG 1bd0A 98 :QQR T0547 153 :ITLTIEGLNELEAIIDIAK 1bd0A 101 :IALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLH 1bd0A 120 :GPFPIHFHLKMDTG T0547 190 :GV 1bd0A 134 :MG T0547 203 :KFGL 1bd0A 136 :RLGV T0547 207 :TSTELIEAVNLLKENKLLEQFT 1bd0A 141 :DEEETKRIVALIERHPHFVLEG T0547 230 :IHFHLG 1bd0A 163 :LYTHFA T0547 236 :SQITEIHPLKKALNEAGNIYTEL 1bd0A 170 :ADEVNTDYFSYQYTRFLHMLEWL T0547 262 :G 1bd0A 193 :P T0547 264 :KNLKAINLGGGLAV 1bd0A 194 :SRPPLVHCANSAAS T0547 310 :KK 1bd0A 211 :PD T0547 313 :LEPDI 1bd0A 213 :RTFNM T0547 319 :IESGRFVAA 1bd0A 218 :VRFGIAMYG T0547 328 :NHAVLIAPVLELFSQE 1bd0A 243 :EAFSLHSRLVHVKKLQ T0547 344 :YAE 1bd0A 274 :EEW T0547 348 :KLILKK 1bd0A 277 :IGTIPI T0547 354 :QNPKLIDELY 1bd0A 284 :YADGWLRRLQ T0547 374 :ALE 1bd0A 294 :HFH T0547 377 :YLHDSIDHLES 1bd0A 302 :QKAPIVGRICM T0547 390 :TLFDLGY 1bd0A 313 :DQCMIRL T0547 399 :LQDRSNAEILTHLI 1bd0A 320 :PGPLPVGTKVTLIG T0547 413 :TKKAILLLGD 1bd0A 342 :IDDVARHLET T0547 428 :DLLAIQDEVQERYLVNFSL 1bd0A 352 :INYEVPCTISYRVPRIFFR T0547 543 :KGY 1bd0A 371 :HKR T0547 547 :VEGIIEAQ 1bd0A 374 :IMEVRNAI Number of specific fragments extracted= 31 number of extra gaps= 0 total=2403 Will force an alignment to be made, even if fragment is small Number of alignments=103 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)K28 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)S555 because last residue in template chain is (1bd0A)G382 T0547 42 :GYKGP 1bd0A 3 :DFHRD T0547 47 :LLLRFPHLIQKQIENIYGNF 1bd0A 9 :WAEVDLDAIYDNVENLRRLL T0547 77 :G 1bd0A 29 :P T0547 78 :GFNAVYPLKVNQY 1bd0A 31 :DTHIMAVVKANAY T0547 91 :PGFVKNLVKLGK 1bd0A 48 :VQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1bd0A 60 :SRLAVAFLDEALALREKGIE T0547 127 :APITVNGFKDRELINIGF 1bd0A 80 :APILVLGASRPADAALAA T0547 148 :EMG 1bd0A 98 :QQR T0547 153 :ITLTIEGLNELEAIIDIAK 1bd0A 101 :IALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRV 1bd0A 120 :GPFPIHFHLKM T0547 187 :HSAGV 1bd0A 131 :DTGMG T0547 203 :KFGL 1bd0A 136 :RLGV T0547 207 :TSTELIEAVNLLKENKLLEQFT 1bd0A 141 :DEEETKRIVALIERHPHFVLEG T0547 230 :IHFHLGS 1bd0A 163 :LYTHFAT T0547 237 :QITEIHPLKKALNEAGNIYTEL 1bd0A 171 :DEVNTDYFSYQYTRFLHMLEWL T0547 262 :GA 1bd0A 193 :PS T0547 265 :NLKAINLGGGLAV 1bd0A 195 :RPPLVHCANSAAS T0547 278 :EYSQFKNEK 1bd0A 223 :AMYGLAPSP T0547 311 :KD 1bd0A 232 :GI T0547 316 :DIFIESG 1bd0A 234 :KPLLPYP T0547 326 :AANHAVLIAPVLELFSQE 1bd0A 241 :LKEAFSLHSRLVHVKKLQ T0547 344 :YAE 1bd0A 274 :EEW T0547 348 :KLILKK 1bd0A 277 :IGTIPI T0547 354 :QNPKLIDE 1bd0A 284 :YADGWLRR T0547 372 :SNALE 1bd0A 292 :LQHFH T0547 377 :YLHDSIDHLE 1bd0A 302 :QKAPIVGRIC T0547 389 :LTLFDLGY 1bd0A 312 :MDQCMIRL T0547 399 :LQDRSNAEILTHLITKKAILLL 1bd0A 320 :PGPLPVGTKVTLIGRQGDEVIS T0547 426 :PADLLAIQDEVQERYL 1bd0A 350 :ETINYEVPCTISYRVP T0547 537 :IISINEK 1bd0A 366 :RIFFRHK T0547 546 :EVEGIIEAQ 1bd0A 373 :RIMEVRNAI Number of specific fragments extracted= 31 number of extra gaps= 0 total=2434 Will force an alignment to be made, even if fragment is small Number of alignments=104 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 50 :RFPHLIQKQIENIYGNFN 1bd0A 12 :VDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKVNQYPG 1bd0A 30 :DDTHIMAVVKANAYGH T0547 93 :FVKNLVKLGK 1bd0A 50 :VARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 1bd0A 60 :SRLAVAFLDEALALREKGIEAPILVL T0547 133 :GFKDRELINIGF 1bd0A 86 :GASRPADAALAA T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1bd0A 98 :QQRIALTVFRSDWLEEASALYSG T0547 177 :KPNIGLRVRLHSAGV 1bd0A 121 :PFPIHFHLKMDTGMG T0547 203 :KFGL 1bd0A 136 :RLGV T0547 207 :TSTELIEAVNLLKENKLLEQFT 1bd0A 141 :DEEETKRIVALIERHPHFVLEG T0547 230 :IHFHLGS 1bd0A 163 :LYTHFAT T0547 237 :QITEIHPLKKALNEAGNIYTEL 1bd0A 171 :DEVNTDYFSYQYTRFLHMLEWL T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAE 1bd0A 193 :PSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLP T0547 324 :FVAANHAVLIAPVLELFSQE 1bd0A 239 :YPLKEAFSLHSRLVHVKKLQ T0547 359 :IDELYDL 1bd0A 273 :TEEWIGT T0547 370 :KPSNALE 1bd0A 280 :IPIGYAD T0547 377 :YLHDSIDHLE 1bd0A 302 :QKAPIVGRIC T0547 389 :LTLFDLGY 1bd0A 312 :MDQCMIRL T0547 400 :Q 1bd0A 320 :P T0547 401 :DRSNAEILTHL 1bd0A 322 :PLPVGTKVTLI T0547 437 :QERYLVNFS 1bd0A 333 :GRQGDEVIS Number of specific fragments extracted= 20 number of extra gaps= 0 total=2454 Will force an alignment to be made, even if fragment is small Number of alignments=105 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)D41 because first residue in template chain is (1bd0A)N2 T0547 42 :GYKGP 1bd0A 3 :DFHRD T0547 47 :LLLRFPHLIQKQIENIYGNF 1bd0A 9 :WAEVDLDAIYDNVENLRRLL T0547 77 :G 1bd0A 29 :P T0547 78 :GFNAVYPLKVNQY 1bd0A 31 :DTHIMAVVKANAY T0547 91 :PGFVKNLVKLGK 1bd0A 48 :VQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1bd0A 60 :SRLAVAFLDEALALREKGIE T0547 127 :APITVNGFKDRELINIGF 1bd0A 80 :APILVLGASRPADAALAA T0547 148 :EMG 1bd0A 98 :QQR T0547 153 :ITLTIEGLNELEAIIDIAK 1bd0A 101 :IALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVR 1bd0A 120 :GPFPIHFHLKMD T0547 188 :SAGV 1bd0A 132 :TGMG T0547 203 :KFGL 1bd0A 136 :RLGV T0547 207 :TSTELIEAVNLLKENKLLEQFT 1bd0A 141 :DEEETKRIVALIERHPHFVLEG T0547 230 :IHFHLG 1bd0A 163 :LYTHFA T0547 236 :SQITEIHPLKKALNEAGNI 1bd0A 170 :ADEVNTDYFSYQYTRFLHM T0547 258 :LRKMGA 1bd0A 189 :LEWLPS T0547 265 :NLKAINLGGGLAVEY 1bd0A 195 :RPPLVHCANSAASLR T0547 307 :AEQKKDLEP 1bd0A 222 :IAMYGLAPS T0547 318 :FIESG 1bd0A 236 :LLPYP T0547 326 :AANHAVLIAPVLELFSQE 1bd0A 241 :LKEAFSLHSRLVHVKKLQ T0547 344 :YAE 1bd0A 274 :EEW T0547 348 :KLILKK 1bd0A 277 :IGTIPI T0547 354 :QNPKLIDELYD 1bd0A 284 :YADGWLRRLQH T0547 368 :SIKPSNA 1bd0A 295 :FHVLVDG T0547 377 :YLHDSIDHLE 1bd0A 302 :QKAPIVGRIC T0547 389 :LTLFDLGY 1bd0A 312 :MDQCMIRL T0547 399 :LQDRSNAEILTHLITKKAILLLG 1bd0A 320 :PGPLPVGTKVTLIGRQGDEVISI T0547 423 :KQNPADLLAIQDEVQERYLVNFSLFQSMPDFW 1bd0A 347 :RHLETINYEVPCTISYRVPRIFFRHKRIMEVR Number of specific fragments extracted= 28 number of extra gaps= 0 total=2482 Will force an alignment to be made, even if fragment is small Number of alignments=106 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)D41 because first residue in template chain is (1bd0A)N2 T0547 42 :GYKGPLLL 1bd0A 3 :DFHRDTWA T0547 50 :RFPHLIQKQIENIYGNFN 1bd0A 12 :VDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKVNQY 1bd0A 30 :DDTHIMAVVKANAY T0547 91 :PGFVKNLVKLGK 1bd0A 48 :VQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1bd0A 60 :SRLAVAFLDEALALREKGIE T0547 127 :APITVNGFKDRELINIGF 1bd0A 80 :APILVLGASRPADAALAA T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1bd0A 98 :QQRIALTVFRSDWLEEASALYSG T0547 175 :KPKPNIGLRVRL 1bd0A 121 :PFPIHFHLKMDT T0547 189 :AGV 1bd0A 133 :GMG T0547 203 :KFGL 1bd0A 136 :RLGV T0547 207 :TSTELIEAVNLLKENKLLEQFT 1bd0A 141 :DEEETKRIVALIERHPHFVLEG T0547 230 :IHFHLG 1bd0A 163 :LYTHFA T0547 236 :SQITEIHPLKKALNEAGNIYTEL 1bd0A 170 :ADEVNTDYFSYQYTRFLHMLEWL T0547 262 :GA 1bd0A 193 :PS T0547 265 :NLKAINLGGGLAVEY 1bd0A 195 :RPPLVHCANSAASLR T0547 291 :TLREYANDVVFI 1bd0A 210 :FPDRTFNMVRFG T0547 303 :LKNIAEQKKD 1bd0A 224 :MYGLAPSPGI T0547 316 :DIFIESG 1bd0A 234 :KPLLPYP T0547 326 :AANHAVLIAPVLELFSQE 1bd0A 241 :LKEAFSLHSRLVHVKKLQ T0547 344 :YAE 1bd0A 274 :EEW T0547 348 :KLILKK 1bd0A 277 :IGTIPI T0547 354 :QNPKLIDELYDLYKS 1bd0A 284 :YADGWLRRLQHFHVL T0547 377 :YLHDSIDHLE 1bd0A 302 :QKAPIVGRIC T0547 389 :LTLFDLGY 1bd0A 312 :MDQCMIRL T0547 399 :LQDRSNAEILTHLITKKAILLLGD 1bd0A 320 :PGPLPVGTKVTLIGRQGDEVISID T0547 423 :KQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 1bd0A 347 :RHLETINYEVPCTISYRVPRIFFRHKRIMEVRNAI Number of specific fragments extracted= 26 number of extra gaps= 0 total=2508 Will force an alignment to be made, even if fragment is small Number of alignments=107 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 43 :YKGPL 1bd0A 4 :FHRDT T0547 48 :LLRFPHLIQKQIENIYGNF 1bd0A 10 :AEVDLDAIYDNVENLRRLL T0547 77 :G 1bd0A 29 :P T0547 78 :GFNAVYPLKVNQ 1bd0A 31 :DTHIMAVVKANA T0547 90 :YPGFVKNLVKLGK 1bd0A 47 :DVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1bd0A 60 :SRLAVAFLDEALALREKGIE T0547 127 :APITVNGFKDRELINIGF 1bd0A 80 :APILVLGASRPADAALAA T0547 148 :EMGH 1bd0A 98 :QQRI T0547 154 :TLTIEGLNELEAIIDIAKE 1bd0A 102 :ALTVFRSDWLEEASALYSG T0547 175 :KPKPNIGLRVRLHS 1bd0A 121 :PFPIHFHLKMDTGM T0547 202 :SKFGL 1bd0A 135 :GRLGV T0547 207 :TSTELIEAVNLLKENKLLEQFT 1bd0A 141 :DEEETKRIVALIERHPHFVLEG T0547 230 :IHFHLGS 1bd0A 163 :LYTHFAT T0547 237 :QITEIHPLKKALNEAGNIYTEL 1bd0A 171 :DEVNTDYFSYQYTRFLHMLEWL T0547 262 :GA 1bd0A 193 :PS T0547 265 :NLKAINLGGGLAV 1bd0A 195 :RPPLVHCANSAAS T0547 307 :AEQKKDLEP 1bd0A 222 :IAMYGLAPS T0547 316 :DIFIESG 1bd0A 234 :KPLLPYP T0547 326 :AANHAVLIAPVLELFSQE 1bd0A 241 :LKEAFSLHSRLVHVKKLQ T0547 344 :YAE 1bd0A 274 :EEW T0547 348 :KLILKK 1bd0A 277 :IGTIPI T0547 354 :QNPKLIDELYDL 1bd0A 284 :YADGWLRRLQHF T0547 369 :IKPSNA 1bd0A 296 :HVLVDG T0547 377 :YLHDSIDHLE 1bd0A 302 :QKAPIVGRIC T0547 389 :LTLFDLGY 1bd0A 312 :MDQCMIRL T0547 399 :LQDRSNAEILTHLITKKAILLLGD 1bd0A 320 :PGPLPVGTKVTLIGRQGDEVISID T0547 423 :KQNPADLLAIQDEVQERYLVNFSLFQ 1bd0A 347 :RHLETINYEVPCTISYRVPRIFFRHK Number of specific fragments extracted= 27 number of extra gaps= 0 total=2535 Will force an alignment to be made, even if fragment is small Number of alignments=108 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 42 :GYKGPL 1bd0A 3 :DFHRDT T0547 48 :LLRFPHLIQKQIENIYGNFN 1bd0A 10 :AEVDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKV 1bd0A 30 :DDTHIMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1bd0A 45 :HGDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1bd0A 60 :SRLAVAFLDEALALREKGIE T0547 127 :APITVNGFKDRELINIGF 1bd0A 80 :APILVLGASRPADAALAA T0547 148 :EMG 1bd0A 98 :QQR T0547 153 :ITLTIEGLNELEAIIDIAK 1bd0A 101 :IALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLH 1bd0A 120 :GPFPIHFHLKMDTG T0547 190 :GV 1bd0A 134 :MG T0547 203 :KFGL 1bd0A 136 :RLGV T0547 207 :TSTELIEAVNLLKENKLLEQFT 1bd0A 141 :DEEETKRIVALIERHPHFVLEG T0547 230 :IHFHLG 1bd0A 163 :LYTHFA T0547 236 :SQITEIHPLKKALNEAGNIYTEL 1bd0A 170 :ADEVNTDYFSYQYTRFLHMLEWL T0547 262 :G 1bd0A 193 :P T0547 264 :KNLKAINLGGGLAV 1bd0A 194 :SRPPLVHCANSAAS T0547 310 :KK 1bd0A 211 :PD T0547 313 :LEPDI 1bd0A 213 :RTFNM T0547 319 :IESGRFVAA 1bd0A 218 :VRFGIAMYG T0547 328 :NHAVLIAPVLELFSQE 1bd0A 243 :EAFSLHSRLVHVKKLQ T0547 344 :YAE 1bd0A 274 :EEW T0547 348 :KLILKK 1bd0A 277 :IGTIPI T0547 354 :QNPKLIDELY 1bd0A 284 :YADGWLRRLQ T0547 374 :ALE 1bd0A 294 :HFH T0547 377 :YLHDSIDHLES 1bd0A 302 :QKAPIVGRICM T0547 390 :TLFDLGY 1bd0A 313 :DQCMIRL T0547 399 :LQDRSNAEILTHLI 1bd0A 320 :PGPLPVGTKVTLIG T0547 413 :TKKAILLLGD 1bd0A 342 :IDDVARHLET T0547 428 :DLLAIQDEVQERYLVNFSL 1bd0A 352 :INYEVPCTISYRVPRIFFR T0547 543 :KGYEVEGI 1bd0A 371 :HKRIMEVR Number of specific fragments extracted= 30 number of extra gaps= 0 total=2565 Will force an alignment to be made, even if fragment is small Number of alignments=109 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 42 :GYKGP 1bd0A 3 :DFHRD T0547 47 :LLLRFPHLIQKQIENIYGNF 1bd0A 9 :WAEVDLDAIYDNVENLRRLL T0547 77 :G 1bd0A 29 :P T0547 78 :GFNAVYPLKVNQY 1bd0A 31 :DTHIMAVVKANAY T0547 91 :PGFVKNLVKLGK 1bd0A 48 :VQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1bd0A 60 :SRLAVAFLDEALALREKGIE T0547 127 :APITVNGFKDRELINIGF 1bd0A 80 :APILVLGASRPADAALAA T0547 148 :EMG 1bd0A 98 :QQR T0547 153 :ITLTIEGLNELEAIIDIAK 1bd0A 101 :IALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRV 1bd0A 120 :GPFPIHFHLKM T0547 187 :HSAGV 1bd0A 131 :DTGMG T0547 203 :KFGL 1bd0A 136 :RLGV T0547 207 :TSTELIEAVNLLKENKLLEQFT 1bd0A 141 :DEEETKRIVALIERHPHFVLEG T0547 230 :IHFHLGS 1bd0A 163 :LYTHFAT T0547 237 :QITEIHPLKKALNEAGNIYTEL 1bd0A 171 :DEVNTDYFSYQYTRFLHMLEWL T0547 262 :GA 1bd0A 193 :PS T0547 265 :NLKAINLGGGLAV 1bd0A 195 :RPPLVHCANSAAS T0547 278 :EYSQFKNEK 1bd0A 223 :AMYGLAPSP T0547 311 :KD 1bd0A 232 :GI T0547 316 :DIFIESG 1bd0A 234 :KPLLPYP T0547 326 :AANHAVLIAPVLELFSQE 1bd0A 241 :LKEAFSLHSRLVHVKKLQ T0547 344 :YAE 1bd0A 274 :EEW T0547 348 :KLILKK 1bd0A 277 :IGTIPI T0547 354 :QNPKLIDE 1bd0A 284 :YADGWLRR T0547 372 :SNALE 1bd0A 292 :LQHFH T0547 377 :YLHDSIDHLE 1bd0A 302 :QKAPIVGRIC T0547 389 :LTLFDLGY 1bd0A 312 :MDQCMIRL T0547 399 :LQDRSNAEILTHLITKKAILLL 1bd0A 320 :PGPLPVGTKVTLIGRQGDEVIS T0547 426 :PADLLAIQDEVQERYLV 1bd0A 350 :ETINYEVPCTISYRVPR T0547 538 :ISINEK 1bd0A 367 :IFFRHK T0547 546 :EVEGIIE 1bd0A 373 :RIMEVRN Number of specific fragments extracted= 31 number of extra gaps= 0 total=2596 Will force an alignment to be made, even if fragment is small Number of alignments=110 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)M2 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)L600 because last residue in template chain is (1bd0A)G382 T0547 3 :DYGIDIWGN 1bd0A 3 :DFHRDTWAE T0547 50 :RFPHLIQKQIENIYGNFNK 1bd0A 12 :VDLDAIYDNVENLRRLLPD T0547 78 :GFNAVYPLKVNQ 1bd0A 31 :DTHIMAVVKANA T0547 90 :YPGFVKNLVKLGK 1bd0A 47 :DVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1bd0A 60 :SRLAVAFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALT T0547 154 :TLTIEGLNELEAI 1bd0A 105 :VFRSDWLEEASAL T0547 174 :FKPKPNIGLRVRLHSAGVG 1bd0A 118 :YSGPFPIHFHLKMDTGMGR T0547 204 :FGLTS 1bd0A 137 :LGVKD T0547 209 :TELIEAVNLLKENK 1bd0A 143 :EETKRIVALIERHP T0547 224 :LEQFTMIHFHLGS 1bd0A 157 :HFVLEGLYTHFAT T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 1bd0A 171 :DEVNTDYFSYQYTRFLHMLEWLPSR T0547 263 :AKNLK 1bd0A 196 :PPLVH T0547 279 :YSQFKNEKSR 1bd0A 201 :CANSAASLRF T0547 292 :LREYANDVVFILKNIAEQKKDL 1bd0A 211 :PDRTFNMVRFGIAMYGLAPSPG T0547 314 :EPDI 1bd0A 234 :KPLL T0547 324 :FVAANHAVLIAPVLELFSQEY 1bd0A 239 :YPLKEAFSLHSRLVHVKKLQP T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDR 1bd0A 267 :ATYTAQTEEWIGTIPIGYADGWLRRLQHFHVLVDGQKAPIVGRICMDQCMIRLPGPLP T0547 407 :ILTH 1bd0A 327 :TKVT T0547 529 :LFTHPT 1bd0A 331 :LIGRQG T0547 548 :EGIIEAQSILDTLEDLDYDIHAIMD 1bd0A 337 :DEVISIDDVARHLETINYEVPCTIS T0547 580 :NSKLVNDKQKKHILGELYLF 1bd0A 362 :YRVPRIFFRHKRIMEVRNAI Number of specific fragments extracted= 21 number of extra gaps= 0 total=2617 Will force an alignment to be made, even if fragment is small Number of alignments=111 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)V21 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)T531 because last residue in template chain is (1bd0A)G382 T0547 22 :CINYEK 1bd0A 3 :DFHRDT T0547 47 :LLLRFPHLIQKQIENIYGNF 1bd0A 9 :WAEVDLDAIYDNVENLRRLL T0547 76 :KGGFNAVYPLKV 1bd0A 29 :PDDTHIMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1bd0A 45 :HGDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1bd0A 60 :SRLAVAFLDEALALREKGIEAPILVLGASRPA T0547 140 :INIGFIAAEM 1bd0A 92 :DAALAAQQRI T0547 154 :TLTIEGLNELEAIIDI 1bd0A 102 :ALTVFRSDWLEEASAL T0547 174 :FKPKPNIGLRVRLHSAGVGI 1bd0A 120 :GPFPIHFHLKMDTGMGRLGV T0547 207 :TSTELIEAVNLLKENK 1bd0A 141 :DEEETKRIVALIERHP T0547 224 :LEQFTMIHFHLGSQ 1bd0A 157 :HFVLEGLYTHFATA T0547 238 :ITEIHPLKKAL 1bd0A 172 :EVNTDYFSYQY T0547 253 :NIYTELRKMGAKNLKA 1bd0A 183 :TRFLHMLEWLPSRPPL T0547 283 :KNEKSR 1bd0A 226 :GLAPSP T0547 305 :NIAEQKKDLE 1bd0A 232 :GIKPLLPYPL T0547 327 :ANHAVLIAPVLELFSQ 1bd0A 242 :KEAFSLHSRLVHVKKL T0547 343 :EYAENKLIL 1bd0A 273 :TEEWIGTIP T0547 352 :KKQNPKLI 1bd0A 286 :DGWLRRLQ T0547 367 :KSIKPSNA 1bd0A 294 :HFHVLVDG T0547 381 :SIDHLESI 1bd0A 303 :KAPIVGRI T0547 391 :LFDLGYVDLQDRSNAEILTHLIT 1bd0A 311 :CMDQCMIRLPGPLPVGTKVTLIG T0547 423 :KQNPADLLAIQDEVQER 1bd0A 334 :RQGDEVISIDDVARHLE T0547 449 :SMPDFWGL 1bd0A 351 :TINYEVPC T0547 493 :KDKPLFLHDVDVEKENYFLG 1bd0A 359 :TISYRVPRIFFRHKRIMEVR T0547 528 :NLF 1bd0A 379 :NAI Number of specific fragments extracted= 24 number of extra gaps= 0 total=2641 Will force an alignment to be made, even if fragment is small Number of alignments=112 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)D41 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)E552 because last residue in template chain is (1bd0A)G382 T0547 42 :GYKGPLLL 1bd0A 3 :DFHRDTWA T0547 50 :RFPHLIQKQIENIYGNFN 1bd0A 12 :VDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKV 1bd0A 30 :DDTHIMAVVKA T0547 88 :NQYPGFVKNLVKLG 1bd0A 45 :HGDVQVARTALEAG T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1bd0A 59 :ASRLAVAFLDEALALREKGIEAPILVLGASRPA T0547 140 :INIGFIAAEM 1bd0A 92 :DAALAAQQRI T0547 154 :TLTIEGLNELEAIIDIAK 1bd0A 102 :ALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLHSAGVG 1bd0A 120 :GPFPIHFHLKMDTGMGRLG T0547 206 :LTS 1bd0A 139 :VKD T0547 209 :TELIEAVNLLKENK 1bd0A 143 :EETKRIVALIERHP T0547 224 :LEQFTMIHFHLGS 1bd0A 157 :HFVLEGLYTHFAT T0547 237 :QITEIHPLKKALNE 1bd0A 171 :DEVNTDYFSYQYTR T0547 255 :YTELRKMGAKNLKAINL 1bd0A 185 :FLHMLEWLPSRPPLVHC T0547 293 :REYANDVV 1bd0A 212 :DRTFNMVR T0547 321 :SGRFVAA 1bd0A 220 :FGIAMYG T0547 328 :NHAVLIAPVLELFSQ 1bd0A 243 :EAFSLHSRLVHVKKL T0547 343 :EYAENKLILKKQNPKLIDELYDLYKSIKP 1bd0A 273 :TEEWIGTIPIGYADGWLRRLQHFHVLVDG T0547 380 :DSIDHLESI 1bd0A 302 :QKAPIVGRI T0547 391 :LFDLGYVDLQDRSNAEILTHLITK 1bd0A 311 :CMDQCMIRLPGPLPVGTKVTLIGR T0547 426 :PADLLAIQDEVQERYLVNFS 1bd0A 339 :VISIDDVARHLETINYEVPC T0547 529 :LFT 1bd0A 359 :TIS T0547 534 :TEAIISINEKG 1bd0A 362 :YRVPRIFFRHK T0547 545 :YEVEGII 1bd0A 375 :MEVRNAI Number of specific fragments extracted= 23 number of extra gaps= 0 total=2664 Will force an alignment to be made, even if fragment is small Number of alignments=113 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (1bd0A)N2 T0547 28 :KP 1bd0A 3 :DF T0547 44 :KGPLLL 1bd0A 5 :HRDTWA T0547 50 :RFPHLIQKQIENIYGNFN 1bd0A 12 :VDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKV 1bd0A 30 :DDTHIMAVVKA T0547 89 :QYPGFVKNLVKLGK 1bd0A 46 :GDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 1bd0A 60 :SRLAVAFLDEALALREKGIEAPILVLGASRP T0547 139 :LINIGFIAAEM 1bd0A 91 :ADAALAAQQRI T0547 154 :TLTIEGLNELEAIIDIAK 1bd0A 102 :ALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLHSAGVGI 1bd0A 120 :GPFPIHFHLKMDTGMGRLGV T0547 207 :TSTELIEAVNLLKENK 1bd0A 141 :DEEETKRIVALIERHP T0547 224 :LEQFTMIHFHLGS 1bd0A 157 :HFVLEGLYTHFAT T0547 238 :ITEIHPLKKALNEAGNIYTEL 1bd0A 172 :EVNTDYFSYQYTRFLHMLEWL T0547 263 :AKNLKAINL 1bd0A 193 :PSRPPLVHC T0547 286 :KSRN 1bd0A 229 :PSPG T0547 306 :IAEQKKDL 1bd0A 233 :IKPLLPYP T0547 326 :AANHAVLIAPVLELFSQEY 1bd0A 241 :LKEAFSLHSRLVHVKKLQP T0547 345 :AENKLI 1bd0A 267 :ATYTAQ T0547 456 :LEQNFPIMPLDRLDEEPTR 1bd0A 273 :TEEWIGTIPIGYADGWLRR T0547 497 :LFLHDVDVEKENYFL 1bd0A 292 :LQHFHVLVDGQKAPI T0547 512 :G 1bd0A 308 :G T0547 532 :HPTEAIISIN 1bd0A 311 :CMDQCMIRLP T0547 542 :EKG 1bd0A 324 :PVG T0547 545 :YEVEGIIEAQ 1bd0A 328 :KVTLIGRQGD T0547 555 :SILDTLEDLDYDIHAIMDIL 1bd0A 341 :SIDDVARHLETINYEVPCTI T0547 601 :NDNGYLKSIGV 1bd0A 361 :SYRVPRIFFRH Number of specific fragments extracted= 25 number of extra gaps= 0 total=2689 Will force an alignment to be made, even if fragment is small Number of alignments=114 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)Y605 because last residue in template chain is (1bd0A)G382 T0547 28 :KP 1bd0A 3 :DF T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 1bd0A 5 :HRDTWAEVDLDAIYDNVENLRRLL T0547 76 :KGGFNAVYPLKV 1bd0A 29 :PDDTHIMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1bd0A 45 :HGDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1bd0A 60 :SRLAVAFLDEALALREKGIEAPILVLGASRPAD T0547 141 :NIGFIAAEM 1bd0A 93 :AALAAQQRI T0547 154 :TLTIEGLNELEAIIDIAK 1bd0A 102 :ALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLHSAGVGI 1bd0A 120 :GPFPIHFHLKMDTGMGRLGV T0547 207 :TSTELIEAVNLLKENK 1bd0A 141 :DEEETKRIVALIERHP T0547 224 :LEQFTMIHFHLGSQI 1bd0A 157 :HFVLEGLYTHFATAD T0547 239 :TEIHPLKKA 1bd0A 173 :VNTDYFSYQ T0547 252 :GNIYTELRKMGAKNLKAINLG 1bd0A 182 :YTRFLHMLEWLPSRPPLVHCA T0547 309 :QKKDLEPDIFI 1bd0A 209 :RFPDRTFNMVR T0547 321 :SGRFVAA 1bd0A 220 :FGIAMYG T0547 328 :NHAVLIAPVLELFSQEYAE 1bd0A 243 :EAFSLHSRLVHVKKLQPGE T0547 349 :LILKKQ 1bd0A 262 :KVSYGA T0547 402 :R 1bd0A 268 :T T0547 403 :SNAEILTHLITKK 1bd0A 271 :AQTEEWIGTIPIG T0547 421 :GDKQNPADLLAIQDEVQERYLVNF 1bd0A 284 :YADGWLRRLQHFHVLVDGQKAPIV T0547 470 :EEPTRSASIWDIT 1bd0A 308 :GRICMDQCMIRLP T0547 501 :DVDVE 1bd0A 321 :GPLPV T0547 533 :PTEAIISINEKGYEV 1bd0A 326 :GTKVTLIGRQGDEVI T0547 555 :SILDTLEDLDYD 1bd0A 341 :SIDDVARHLETI T0547 594 :GELYLFLND 1bd0A 355 :EVPCTISYR T0547 603 :NG 1bd0A 380 :AI Number of specific fragments extracted= 25 number of extra gaps= 0 total=2714 Will force an alignment to be made, even if fragment is small Number of alignments=115 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (1bd0A)N2 Warning: unaligning (T0547)Y605 because last residue in template chain is (1bd0A)G382 T0547 28 :KP 1bd0A 3 :DF T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 1bd0A 5 :HRDTWAEVDLDAIYDNVENLRRLL T0547 76 :KGGFNAVYPLKV 1bd0A 29 :PDDTHIMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1bd0A 45 :HGDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1bd0A 60 :SRLAVAFLDEALALREKGIEAPILVLGASRPAD T0547 141 :NIGFIAAEM 1bd0A 93 :AALAAQQRI T0547 154 :TLTIEGLNELEAIIDIAK 1bd0A 102 :ALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLHSA 1bd0A 120 :GPFPIHFHLKMDTGMG T0547 203 :KFGLTS 1bd0A 136 :RLGVKD T0547 209 :TELIEAVNLLKENK 1bd0A 143 :EETKRIVALIERHP T0547 224 :LEQFTMIHFHLGSQ 1bd0A 157 :HFVLEGLYTHFATA T0547 238 :ITEIHPLKKAL 1bd0A 172 :EVNTDYFSYQY T0547 253 :NIYTELRKMGAKNLKAINL 1bd0A 183 :TRFLHMLEWLPSRPPLVHC T0547 283 :KNEKSR 1bd0A 231 :PGIKPL T0547 309 :QKKDLE 1bd0A 237 :LPYPLK T0547 328 :NHAVLIAPVLELFSQ 1bd0A 243 :EAFSLHSRLVHVKKL T0547 343 :EYAENKLILKKQNPKL 1bd0A 273 :TEEWIGTIPIGYADGW T0547 372 :SNALEYLHD 1bd0A 289 :LRRLQHFHV T0547 381 :SIDHLES 1bd0A 303 :KAPIVGR T0547 390 :TLFDLGYVDLQDRSNAEILTHLITKKAILL 1bd0A 310 :ICMDQCMIRLPGPLPVGTKVTLIGRQGDEV T0547 428 :DLLAIQDEVQERY 1bd0A 340 :ISIDDVARHLETI T0547 449 :SMPDFWGLEQNF 1bd0A 353 :NYEVPCTISYRV T0547 536 :AIISINEKGYEVEGI 1bd0A 365 :PRIFFRHKRIMEVRN T0547 603 :NG 1bd0A 380 :AI Number of specific fragments extracted= 24 number of extra gaps= 0 total=2738 Will force an alignment to be made, even if fragment is small Number of alignments=116 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 50 :RFPHLIQKQIENIYGNFNK 1bd0A 12 :VDLDAIYDNVENLRRLLPD T0547 78 :GFNAVYPLKVNQ 1bd0A 31 :DTHIMAVVKANA T0547 90 :YPGFVKNLVKLGK 1bd0A 47 :DVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1bd0A 60 :SRLAVAFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALT T0547 154 :TLTIEGLNELEAI 1bd0A 105 :VFRSDWLEEASAL T0547 174 :FKPKPNIGLRVRLHSAGVG 1bd0A 118 :YSGPFPIHFHLKMDTGMGR T0547 204 :FGLTS 1bd0A 137 :LGVKD T0547 209 :TELIEAVNLLKENK 1bd0A 143 :EETKRIVALIERHP T0547 224 :LEQFTMIHFHLGS 1bd0A 157 :HFVLEGLYTHFAT Number of specific fragments extracted= 9 number of extra gaps= 0 total=2747 Will force an alignment to be made, even if fragment is small Number of alignments=117 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 47 :LLLRFPHLIQKQIENIYGNF 1bd0A 9 :WAEVDLDAIYDNVENLRRLL T0547 76 :KGGFNAVYPLKV 1bd0A 29 :PDDTHIMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1bd0A 45 :HGDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1bd0A 60 :SRLAVAFLDEALALREKGIEAPILVLGASRPA T0547 140 :INIGFIAAEM 1bd0A 92 :DAALAAQQRI T0547 154 :TLTIEGLNELEAIIDI 1bd0A 102 :ALTVFRSDWLEEASAL T0547 174 :FKPKPNIGLRVRLHSAGVGI 1bd0A 120 :GPFPIHFHLKMDTGMGRLGV T0547 207 :TSTELIEAVNLLKENK 1bd0A 141 :DEEETKRIVALIERHP T0547 224 :LEQFTMIHFHLGSQ 1bd0A 157 :HFVLEGLYTHFATA T0547 238 :ITEIHPLKKAL 1bd0A 172 :EVNTDYFSYQY T0547 253 :NIYTELRKMGAKNLKA 1bd0A 183 :TRFLHMLEWLPSRPPL T0547 283 :KNEKSR 1bd0A 226 :GLAPSP T0547 305 :NIAEQKKDLE 1bd0A 232 :GIKPLLPYPL T0547 327 :ANHAVLIAPVLELFSQ 1bd0A 242 :KEAFSLHSRLVHVKKL T0547 343 :EYAENKLIL 1bd0A 273 :TEEWIGTIP T0547 352 :KKQNPKLI 1bd0A 286 :DGWLRRLQ T0547 367 :KSIKPSNA 1bd0A 294 :HFHVLVDG T0547 381 :SIDHLESI 1bd0A 303 :KAPIVGRI T0547 391 :LFDLGYVDLQDRSNAEILTHLI 1bd0A 311 :CMDQCMIRLPGPLPVGTKVTLI T0547 540 :INEKGYEV 1bd0A 333 :GRQGDEVI T0547 555 :SILDTLEDLDYDIHAIM 1bd0A 341 :SIDDVARHLETINYEVP Number of specific fragments extracted= 21 number of extra gaps= 0 total=2768 Will force an alignment to be made, even if fragment is small Number of alignments=118 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 42 :GYKGPLLL 1bd0A 3 :DFHRDTWA T0547 50 :RFPHLIQKQIENIYGNFN 1bd0A 12 :VDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKV 1bd0A 30 :DDTHIMAVVKA T0547 88 :NQYPGFVKNLVKLG 1bd0A 45 :HGDVQVARTALEAG T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1bd0A 59 :ASRLAVAFLDEALALREKGIEAPILVLGASRPA T0547 140 :INIGFIAAEM 1bd0A 92 :DAALAAQQRI T0547 154 :TLTIEGLNELEAIIDIAK 1bd0A 102 :ALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLHSAGVG 1bd0A 120 :GPFPIHFHLKMDTGMGRLG T0547 206 :LTS 1bd0A 139 :VKD T0547 209 :TELIEAVNLLKENK 1bd0A 143 :EETKRIVALIERHP T0547 224 :LEQFTMIHFHLGS 1bd0A 157 :HFVLEGLYTHFAT T0547 237 :QITEIHPLKKALNE 1bd0A 171 :DEVNTDYFSYQYTR T0547 255 :YTELRKMGAKNLKAINL 1bd0A 185 :FLHMLEWLPSRPPLVHC T0547 293 :REYANDVV 1bd0A 212 :DRTFNMVR T0547 321 :SGRFVAA 1bd0A 220 :FGIAMYG T0547 328 :NHAVLIAPVLELFSQ 1bd0A 243 :EAFSLHSRLVHVKKL T0547 343 :EYAENKLILKKQNPKLIDELYDLYKSIKP 1bd0A 273 :TEEWIGTIPIGYADGWLRRLQHFHVLVDG T0547 380 :DSIDHLESI 1bd0A 302 :QKAPIVGRI T0547 391 :LFDLGYVDLQDRSNAEILTHLITK 1bd0A 311 :CMDQCMIRLPGPLPVGTKVTLIGR Number of specific fragments extracted= 19 number of extra gaps= 0 total=2787 Will force an alignment to be made, even if fragment is small Number of alignments=119 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 47 :LLLRFPHLIQKQIENIYGNFN 1bd0A 9 :WAEVDLDAIYDNVENLRRLLP T0547 77 :GGFNAVYPLKV 1bd0A 30 :DDTHIMAVVKA T0547 89 :QYPGFVKNLVKLGK 1bd0A 46 :GDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 1bd0A 60 :SRLAVAFLDEALALREKGIEAPILVLGASRP T0547 139 :LINIGFIAAEM 1bd0A 91 :ADAALAAQQRI T0547 154 :TLTIEGLNELEAIIDIAK 1bd0A 102 :ALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLHSAGVGI 1bd0A 120 :GPFPIHFHLKMDTGMGRLGV T0547 207 :TSTELIEAVNLLKENK 1bd0A 141 :DEEETKRIVALIERHP T0547 224 :LEQFTMIHFHLGS 1bd0A 157 :HFVLEGLYTHFAT T0547 238 :ITEIHPLKKALNEAGNIYTEL 1bd0A 172 :EVNTDYFSYQYTRFLHMLEWL T0547 263 :AKNLKAINL 1bd0A 193 :PSRPPLVHC T0547 286 :KSRN 1bd0A 229 :PSPG T0547 306 :IAEQKKDL 1bd0A 233 :IKPLLPYP T0547 326 :AANHAVLIAPVLELFSQEY 1bd0A 241 :LKEAFSLHSRLVHVKKLQP T0547 345 :AENKLI 1bd0A 267 :ATYTAQ T0547 456 :LEQNFPIMPLDRLDEEPTR 1bd0A 273 :TEEWIGTIPIGYADGWLRR T0547 497 :LFLHDVDVEKENYFL 1bd0A 292 :LQHFHVLVDGQKAPI T0547 512 :G 1bd0A 308 :G T0547 532 :HPTEAIISIN 1bd0A 311 :CMDQCMIRLP T0547 542 :EKG 1bd0A 324 :PVG T0547 545 :YEVEGIIEAQ 1bd0A 328 :KVTLIGRQGD T0547 555 :SILDTLEDLDYDIHAIMD 1bd0A 341 :SIDDVARHLETINYEVPC Number of specific fragments extracted= 22 number of extra gaps= 0 total=2809 Will force an alignment to be made, even if fragment is small Number of alignments=120 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1bd0A 6 :RDTWAEVDLDAIYDNVENLRRLL T0547 76 :KGGFNAVYPLKV 1bd0A 29 :PDDTHIMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1bd0A 45 :HGDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1bd0A 60 :SRLAVAFLDEALALREKGIEAPILVLGASRPAD T0547 141 :NIGFIAAEM 1bd0A 93 :AALAAQQRI T0547 154 :TLTIEGLNELEAIIDIAK 1bd0A 102 :ALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLHSAGVGI 1bd0A 120 :GPFPIHFHLKMDTGMGRLGV T0547 207 :TSTELIEAVNLLKENK 1bd0A 141 :DEEETKRIVALIERHP T0547 224 :LEQFTMIHFHLGSQI 1bd0A 157 :HFVLEGLYTHFATAD T0547 239 :TEIHPLKKA 1bd0A 173 :VNTDYFSYQ T0547 252 :GNIYTELRKMGAKNLKAINLG 1bd0A 182 :YTRFLHMLEWLPSRPPLVHCA T0547 309 :QKKDLEPDIFI 1bd0A 209 :RFPDRTFNMVR T0547 321 :SGRFVAA 1bd0A 220 :FGIAMYG T0547 328 :NHAVLIAPVLELFSQEYAE 1bd0A 243 :EAFSLHSRLVHVKKLQPGE T0547 349 :LILKK 1bd0A 262 :KVSYG T0547 401 :DR 1bd0A 267 :AT T0547 403 :SNAEILTHLITKK 1bd0A 271 :AQTEEWIGTIPIG T0547 421 :GDKQNPADLLAIQDEVQERYLVNF 1bd0A 284 :YADGWLRRLQHFHVLVDGQKAPIV T0547 470 :EEPTRSASIWDIT 1bd0A 308 :GRICMDQCMIRLP T0547 501 :DVDVE 1bd0A 321 :GPLPV T0547 533 :PTEAIISINEKGYEV 1bd0A 326 :GTKVTLIGRQGDEVI T0547 555 :SILDTLEDLDY 1bd0A 341 :SIDDVARHLET Number of specific fragments extracted= 22 number of extra gaps= 0 total=2831 Will force an alignment to be made, even if fragment is small Number of alignments=121 # 1bd0A read from all-align.a2m # found chain 1bd0A in training set T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1bd0A 6 :RDTWAEVDLDAIYDNVENLRRLL T0547 76 :KGGFNAVYPLKV 1bd0A 29 :PDDTHIMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1bd0A 45 :HGDVQVARTALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1bd0A 60 :SRLAVAFLDEALALREKGIEAPILVLGASRPAD T0547 141 :NIGFIAAEM 1bd0A 93 :AALAAQQRI T0547 154 :TLTIEGLNELEAIIDIAK 1bd0A 102 :ALTVFRSDWLEEASALYS T0547 174 :FKPKPNIGLRVRLHSA 1bd0A 120 :GPFPIHFHLKMDTGMG T0547 203 :KFGLTS 1bd0A 136 :RLGVKD T0547 209 :TELIEAVNLLKENK 1bd0A 143 :EETKRIVALIERHP T0547 224 :LEQFTMIHFHLGSQ 1bd0A 157 :HFVLEGLYTHFATA T0547 238 :ITEIHPLKKAL 1bd0A 172 :EVNTDYFSYQY T0547 253 :NIYTELRKMGAKNLKAINL 1bd0A 183 :TRFLHMLEWLPSRPPLVHC T0547 283 :KNEKSR 1bd0A 231 :PGIKPL T0547 309 :QKKDLE 1bd0A 237 :LPYPLK T0547 328 :NHAVLIAPVLELFSQEYAENK 1bd0A 243 :EAFSLHSRLVHVKKLQPGEKV T0547 398 :DLQDR 1bd0A 264 :SYGAT T0547 403 :SNAEILTHLITKKAILLLGDKQNPA 1bd0A 271 :AQTEEWIGTIPIGYADGWLRRLQHF T0547 429 :L 1bd0A 296 :H T0547 435 :EVQERYLVNFSLFQSMPD 1bd0A 297 :VLVDGQKAPIVGRICMDQ T0547 477 :SIWDITCDS 1bd0A 315 :CMIRLPGPL T0547 531 :THPTEAIISINEKGYEV 1bd0A 324 :PVGTKVTLIGRQGDEVI T0547 555 :SILDTLEDLD 1bd0A 341 :SIDDVARHLE Number of specific fragments extracted= 22 number of extra gaps= 0 total=2853 Will force an alignment to be made, even if fragment is small Number of alignments=122 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)M1 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E8 Warning: unaligning (T0547)M2 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)V21 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)C22 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)I34 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)K36 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)V31 Warning: unaligning (T0547)R39 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S32 Warning: unaligning (T0547)D40 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)S34 Warning: unaligning (T0547)D41 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S34 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)K196 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K298 Warning: unaligning (T0547)N347 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E311 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)N443 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)F444 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)L465 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)D466 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)R467 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)L468 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E470 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)E471 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)I478 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)G487 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)L497 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)I556 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)L557 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)D558 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)T559 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 T0547 16 :IKNGK 1d7kA 9 :FDCHF T0547 27 :KKPAII 1d7kA 20 :AKDILD T0547 35 :V 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNFN 1d7kA 43 :ADLGDILKKHLRWLKALP T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYN 1d7kA 87 :FDCASKTEIQLVQSLG T0547 124 :NEGAPITVNGFKDRELINIGF 1d7kA 104 :PPERIIYANPCKQVSQIKYAA T0547 150 :GHNI 1d7kA 125 :NNGV T0547 154 :TLTIEGLNELEAI 1d7kA 130 :MMTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENKL 1d7kA 167 :SVKFGATLRTSRLLLERAKELNI T0547 226 :QFTMIHFHL 1d7kA 190 :DVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 264 :K 1d7kA 228 :S T0547 266 :LKAINLGGGLAVEY 1d7kA 229 :MYLLDIGGGFPGSE T0547 287 :SRNYTLREYANDVVFILKNIAE 1d7kA 243 :DVKLKFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AE 1d7kA 299 :EQ T0547 436 :VQERYLV 1d7kA 312 :QTFMYYV T0547 445 :SLFQSMPDFW 1d7kA 321 :GVYGSFNCIL T0547 455 :GLEQNFPIMP 1d7kA 332 :DHAHVKPLLQ T0547 469 :D 1d7kA 346 :P T0547 472 :PTR 1d7kA 349 :RYY T0547 477 :S 1d7kA 354 :S T0547 480 :DITCDSD 1d7kA 357 :GPTCDGL T0547 489 :I 1d7kA 366 :I T0547 494 :DK 1d7kA 367 :VE T0547 498 :FLHDVD 1d7kA 371 :DLPEMH T0547 507 :ENYFLGFFLVGAYQEVLGMKHNL 1d7kA 377 :VGDWMLFENMGAYTVAAASTFNG T0547 532 :HPTEAIIS 1d7kA 402 :RPTIYYVM T0547 544 :GYEVEGIIEAQ 1d7kA 410 :SGPAWQLMQQF Number of specific fragments extracted= 35 number of extra gaps= 22 total=2888 Will force an alignment to be made, even if fragment is small Number of alignments=123 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)V21 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)C22 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)I34 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)K36 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)V31 Warning: unaligning (T0547)R39 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S32 Warning: unaligning (T0547)D40 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)S34 Warning: unaligning (T0547)D41 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S34 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)K196 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K298 Warning: unaligning (T0547)N347 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E311 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)N443 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)F444 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)L465 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)D466 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)R467 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)L468 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E470 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)E471 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)I478 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)G487 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)L497 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 T0547 19 :GK 1d7kA 12 :HF T0547 27 :KKPAII 1d7kA 20 :AKDILD T0547 35 :V 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNFN 1d7kA 43 :ADLGDILKKHLRWLKALP T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYN 1d7kA 87 :FDCASKTEIQLVQSLG T0547 124 :NEGAPITVNGFKDRELINIGF 1d7kA 104 :PPERIIYANPCKQVSQIKYAA T0547 150 :GHNI 1d7kA 125 :NNGV T0547 154 :TLTIEGLNELEAI 1d7kA 130 :MMTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENKL 1d7kA 167 :SVKFGATLRTSRLLLERAKELNI T0547 226 :QFTMIHFHL 1d7kA 190 :DVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 264 :K 1d7kA 228 :S T0547 266 :LKAINLGGGLAVEY 1d7kA 229 :MYLLDIGGGFPGSE T0547 287 :SRNYTLREYANDVVFILKNIAE 1d7kA 243 :DVKLKFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AE 1d7kA 299 :EQ T0547 436 :VQERYLV 1d7kA 312 :QTFMYYV T0547 445 :SLFQSMPDFW 1d7kA 321 :GVYGSFNCIL T0547 455 :GLEQNFPIMP 1d7kA 332 :DHAHVKPLLQ T0547 469 :D 1d7kA 346 :P T0547 472 :PTR 1d7kA 349 :RYY T0547 477 :S 1d7kA 354 :S T0547 480 :DITCDSD 1d7kA 357 :GPTCDGL T0547 489 :I 1d7kA 366 :I T0547 494 :DK 1d7kA 367 :VE T0547 498 :FLHDVD 1d7kA 371 :DLPEMH T0547 507 :ENYFLGFFLVGAYQEVLGMKHNL 1d7kA 377 :VGDWMLFENMGAYTVAAASTFNG T0547 532 :HPTEAIIS 1d7kA 402 :RPTIYYVM Number of specific fragments extracted= 34 number of extra gaps= 21 total=2922 Will force an alignment to be made, even if fragment is small Number of alignments=124 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)I31 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)I32 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)I34 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)V35 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)Q448 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)S449 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)F453 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)W454 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)G455 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)L456 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)E457 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 4 :YGI 1d7kA 9 :FDC T0547 28 :KP 1d7kA 12 :HF T0547 36 :KELRDD 1d7kA 20 :AKDILD T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDR 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQ T0547 139 :LINIGF 1d7kA 117 :VSQIKY T0547 146 :AAEMGHNI 1d7kA 123 :AANNGVQM T0547 155 :LTIEGLNELEAI 1d7kA 131 :MTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 196 :KS 1d7kA 167 :SV T0547 203 :KFGLTSTELIEAVNLLKENKL 1d7kA 169 :KFGATLRTSRLLLERAKELNI T0547 226 :QFTMIHFHL 1d7kA 190 :DVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLA 1d7kA 228 :SMYLLDIGGGFP T0547 282 :FKNEKSR 1d7kA 240 :GSEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDE 1d7kA 321 :GVYGSFNC T0547 362 :LYDLYKSIKPS 1d7kA 330 :LYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLAIQDEVQERYLVNFSLF 1d7kA 402 :RPTIYYVMSGPAWQLMQQF Number of specific fragments extracted= 33 number of extra gaps= 21 total=2955 Will force an alignment to be made, even if fragment is small Number of alignments=125 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)I31 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)I32 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)I34 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)V35 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)N601 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)D602 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)N603 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)G604 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)Y605 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)L606 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)K607 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 4 :YGI 1d7kA 9 :FDC T0547 28 :KP 1d7kA 12 :HF T0547 36 :KELRDD 1d7kA 20 :AKDILD T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDR 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQ T0547 139 :LINIGF 1d7kA 117 :VSQIKY T0547 146 :AAEMGHNI 1d7kA 123 :AANNGVQM T0547 155 :LTIEGLNELEAI 1d7kA 131 :MTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 196 :KS 1d7kA 167 :SV T0547 203 :KFGLTSTELIEAVNLLKENKL 1d7kA 169 :KFGATLRTSRLLLERAKELNI T0547 226 :QFTMIHFHL 1d7kA 190 :DVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLA 1d7kA 228 :SMYLLDIGGGFP T0547 282 :FKNEKSR 1d7kA 240 :GSEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDE 1d7kA 321 :GVYGSFNC T0547 362 :LYDLYKSIKPS 1d7kA 330 :LYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNG T0547 472 :P 1d7kA 403 :P T0547 534 :TEAIISI 1d7kA 404 :TIYYVMS T0547 591 :HILGELYLFL 1d7kA 411 :GPAWQLMQQF Number of specific fragments extracted= 35 number of extra gaps= 21 total=2990 Will force an alignment to be made, even if fragment is small Number of alignments=126 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)N11 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)E12 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)S581 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)K607 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)S608 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)I609 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)G610 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)V611 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 4 :YGIDI 1d7kA 9 :FDCHF T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQV T0547 140 :INIGF 1d7kA 118 :SQIKY T0547 146 :AAEMGHNI 1d7kA 123 :AANNGVQM T0547 155 :LTIEGLNELEAI 1d7kA 131 :MTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 196 :KS 1d7kA 167 :SV T0547 203 :KFGLTSTELIEAVNLLKENKL 1d7kA 169 :KFGATLRTSRLLLERAKELNI T0547 226 :QFTMIHFHL 1d7kA 190 :DVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLA 1d7kA 228 :SMYLLDIGGGFP T0547 282 :FKNEKSR 1d7kA 240 :GSEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDE 1d7kA 321 :GVYGSFNC T0547 362 :LYDLYK 1d7kA 330 :LYDHAH T0547 368 :SIKPS 1d7kA 337 :KPLLQ T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLAIQDEVQERYL 1d7kA 402 :RPTIYYVMSGPAW T0547 576 :ERISN 1d7kA 415 :QLMQQ Number of specific fragments extracted= 35 number of extra gaps= 23 total=3025 Will force an alignment to be made, even if fragment is small Number of alignments=127 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)I31 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)I32 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)I34 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)V35 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)W454 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)G455 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)L456 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)G604 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)Y605 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)L606 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)K607 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 4 :YGID 1d7kA 9 :FDCH T0547 29 :P 1d7kA 13 :F T0547 36 :KELRDD 1d7kA 20 :AKDILD T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDR 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQ T0547 139 :LINIGF 1d7kA 117 :VSQIKY T0547 146 :AAEMGHNI 1d7kA 123 :AANNGVQM T0547 155 :LTIEGLNELEAI 1d7kA 131 :MTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 196 :KS 1d7kA 167 :SV T0547 203 :KFGLTSTELIEAVNLLKENKL 1d7kA 169 :KFGATLRTSRLLLERAKELNI T0547 226 :QFTMIHFHL 1d7kA 190 :DVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLA 1d7kA 228 :SMYLLDIGGGFP T0547 282 :FKNEKSR 1d7kA 240 :GSEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDE 1d7kA 321 :GVYGSFNC T0547 362 :LYDLYKSIKPS 1d7kA 330 :LYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLAIQ 1d7kA 402 :RPTIY T0547 440 :YLVNFSLFQSMPDF 1d7kA 407 :YVMSGPAWQLMQQF Number of specific fragments extracted= 34 number of extra gaps= 21 total=3059 Will force an alignment to be made, even if fragment is small Number of alignments=128 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)N11 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)E12 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S34 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)L606 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)K607 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)S608 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)I609 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)G610 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)V611 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 4 :YGIDI 1d7kA 9 :FDCHF T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQV T0547 140 :INIGF 1d7kA 118 :SQIKY T0547 146 :AAEMGHNI 1d7kA 123 :AANNGVQM T0547 155 :LTIEGLNELEAI 1d7kA 131 :MTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENKL 1d7kA 167 :SVKFGATLRTSRLLLERAKELNI T0547 226 :QFTMIHFHL 1d7kA 190 :DVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLA 1d7kA 228 :SMYLLDIGGGFP T0547 282 :FKNEKSR 1d7kA 240 :GSEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDELYDLYKSIKPS 1d7kA 321 :GVYGSFNCILYDHAHVKPL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNG T0547 472 :PTRSASIW 1d7kA 403 :PTIYYVMS T0547 568 :HAIMDILNER 1d7kA 411 :GPAWQLMQQF Number of specific fragments extracted= 32 number of extra gaps= 23 total=3091 Will force an alignment to be made, even if fragment is small Number of alignments=129 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)N11 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)E12 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)P371 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)S372 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)H527 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)N528 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)L529 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)S608 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)I609 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)G610 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)V611 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 4 :YGIDI 1d7kA 9 :FDCHF T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDR 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQ T0547 139 :LINIGF 1d7kA 117 :VSQIKY T0547 146 :AAEMGHNI 1d7kA 123 :AANNGVQM T0547 155 :LTIEGLNELEAI 1d7kA 131 :MTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 196 :KS 1d7kA 167 :SV T0547 203 :KFGLTSTELIEAVNLLKENKL 1d7kA 169 :KFGATLRTSRLLLERAKELNI T0547 226 :QFTMIHFHL 1d7kA 190 :DVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLA 1d7kA 228 :SMYLLDIGGGFP T0547 282 :FKNEKSR 1d7kA 240 :GSEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDE 1d7kA 321 :GVYGSFNC T0547 362 :LYDLYK 1d7kA 330 :LYDHAH T0547 369 :IK 1d7kA 340 :LQ T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNG T0547 430 :L 1d7kA 403 :P T0547 510 :FLGFFLVGAYQEVLGMK 1d7kA 404 :TIYYVMSGPAWQLMQQF Number of specific fragments extracted= 35 number of extra gaps= 23 total=3126 Will force an alignment to be made, even if fragment is small Number of alignments=130 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)I34 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)V35 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 T0547 36 :KELRDD 1d7kA 20 :AKDILD T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDR 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQ T0547 139 :LINIGF 1d7kA 117 :VSQIKY T0547 146 :AAEMGHNI 1d7kA 123 :AANNGVQM T0547 155 :LTIEGLNELEAI 1d7kA 131 :MTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 196 :KS 1d7kA 167 :SV T0547 203 :KFGLTSTELIEAVNLLKENKL 1d7kA 169 :KFGATLRTSRLLLERAKELNI T0547 226 :QFTMIHFHL 1d7kA 190 :DVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLA 1d7kA 228 :SMYLLDIGGGFP T0547 282 :FKNEKSR 1d7kA 240 :GSEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDE 1d7kA 321 :GVYGSFNC T0547 362 :LYDLYKSIKPS 1d7kA 330 :LYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLAIQDEVQERYLV 1d7kA 402 :RPTIYYVMSGPAWQ Number of specific fragments extracted= 31 number of extra gaps= 20 total=3157 Will force an alignment to be made, even if fragment is small Number of alignments=131 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)I31 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)I32 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)I34 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)V35 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)S445 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)L446 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 T0547 27 :KKP 1d7kA 11 :CHF T0547 36 :KELRDD 1d7kA 20 :AKDILD T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDR 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQ T0547 139 :LINIGF 1d7kA 117 :VSQIKY T0547 146 :AAEMGHNI 1d7kA 123 :AANNGVQM T0547 155 :LTIEGLNELEAI 1d7kA 131 :MTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 196 :KS 1d7kA 167 :SV T0547 203 :KFGLTSTELIEAVNLLKENKL 1d7kA 169 :KFGATLRTSRLLLERAKELNI T0547 226 :QFTMIHFHL 1d7kA 190 :DVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLA 1d7kA 228 :SMYLLDIGGGFP T0547 282 :FKNEKSR 1d7kA 240 :GSEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDE 1d7kA 321 :GVYGSFNC T0547 362 :LYDLYKSIKPS 1d7kA 330 :LYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLAIQDEVQERYLVNF 1d7kA 405 :IYYVMSGPAWQLMQQF Number of specific fragments extracted= 32 number of extra gaps= 21 total=3189 Will force an alignment to be made, even if fragment is small Number of alignments=132 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 T0547 24 :N 1d7kA 13 :F T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQV T0547 140 :INIGF 1d7kA 118 :SQIKY T0547 146 :AAEMGHNI 1d7kA 123 :AANNGVQM T0547 155 :LTIEGLNELEAI 1d7kA 131 :MTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 196 :KS 1d7kA 167 :SV T0547 203 :KFGLTSTELIEAVNLLKENKL 1d7kA 169 :KFGATLRTSRLLLERAKELNI T0547 226 :QFTMIHFHL 1d7kA 190 :DVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLA 1d7kA 228 :SMYLLDIGGGFP T0547 282 :FKNEKSR 1d7kA 240 :GSEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDE 1d7kA 321 :GVYGSFNC T0547 362 :LYDLYK 1d7kA 330 :LYDHAH T0547 368 :SIKPS 1d7kA 337 :KPLLQ T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLAIQDEVQERYLVNFSLF 1d7kA 402 :RPTIYYVMSGPAWQLMQQF Number of specific fragments extracted= 34 number of extra gaps= 22 total=3223 Will force an alignment to be made, even if fragment is small Number of alignments=133 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)I31 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)I32 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)I34 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)V35 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 T0547 36 :KELRDD 1d7kA 20 :AKDILD T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDR 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQ T0547 139 :LINIGF 1d7kA 117 :VSQIKY T0547 146 :AAEMGHNI 1d7kA 123 :AANNGVQM T0547 155 :LTIEGLNELEAI 1d7kA 131 :MTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 196 :KS 1d7kA 167 :SV T0547 203 :KFGLTSTELIEAVNLLKENKL 1d7kA 169 :KFGATLRTSRLLLERAKELNI T0547 226 :QFTMIHFHL 1d7kA 190 :DVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLA 1d7kA 228 :SMYLLDIGGGFP T0547 282 :FKNEKSR 1d7kA 240 :GSEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDE 1d7kA 321 :GVYGSFNC T0547 362 :LYDLYKSIKPS 1d7kA 330 :LYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLAIQ 1d7kA 402 :RPTIY T0547 440 :YLVNF 1d7kA 407 :YVMSG Number of specific fragments extracted= 32 number of extra gaps= 20 total=3255 Will force an alignment to be made, even if fragment is small Number of alignments=134 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S34 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 T0547 21 :VCI 1d7kA 11 :CHF T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQV T0547 140 :INIGF 1d7kA 118 :SQIKY T0547 146 :AAEMGHNI 1d7kA 123 :AANNGVQM T0547 155 :LTIEGLNELEAI 1d7kA 131 :MTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENKL 1d7kA 167 :SVKFGATLRTSRLLLERAKELNI T0547 226 :QFTMIHFHL 1d7kA 190 :DVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLA 1d7kA 228 :SMYLLDIGGGFP T0547 282 :FKNEKSR 1d7kA 240 :GSEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDELYDLYKSIKPS 1d7kA 321 :GVYGSFNCILYDHAHVKPL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNG T0547 472 :PTRSASIW 1d7kA 403 :PTIYYVMS T0547 568 :HAIMDILNE 1d7kA 411 :GPAWQLMQQ Number of specific fragments extracted= 32 number of extra gaps= 22 total=3287 Will force an alignment to be made, even if fragment is small Number of alignments=135 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)P371 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)S372 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDR 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQ T0547 139 :LINIGF 1d7kA 117 :VSQIKY T0547 146 :AAEMGHNI 1d7kA 123 :AANNGVQM T0547 155 :LTIEGLNELEAI 1d7kA 131 :MTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 196 :KS 1d7kA 167 :SV T0547 203 :KFGLTSTELIEAVNLLKENKL 1d7kA 169 :KFGATLRTSRLLLERAKELNI T0547 226 :QFTMIHFHL 1d7kA 190 :DVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLA 1d7kA 228 :SMYLLDIGGGFP T0547 282 :FKNEKSR 1d7kA 240 :GSEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDE 1d7kA 321 :GVYGSFNC T0547 362 :LYDLYK 1d7kA 330 :LYDHAH T0547 369 :IK 1d7kA 340 :LQ T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNG T0547 430 :L 1d7kA 403 :P T0547 510 :FLGFFLVGAYQE 1d7kA 404 :TIYYVMSGPAWQ Number of specific fragments extracted= 34 number of extra gaps= 22 total=3321 Will force an alignment to be made, even if fragment is small Number of alignments=136 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)N18 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)G19 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)L375 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)Q448 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)S449 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)D452 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)F453 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)V611 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 20 :KVCIN 1d7kA 9 :FDCHF T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITV 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIY T0547 132 :NGFKDRELINIGF 1d7kA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 1d7kA 125 :NNGVQMM T0547 156 :TIEGLNELEAI 1d7kA 132 :TFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 224 :LEQFT 1d7kA 189 :IDVVG T0547 230 :IHFHL 1d7kA 194 :VSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAV 1d7kA 228 :SMYLLDIGGGFPG T0547 281 :QFKNEK 1d7kA 241 :SEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDELYDLYKSIKPSN 1d7kA 322 :VYGSFNCILYDHAHVKPLLQ T0547 377 :Y 1d7kA 351 :Y T0547 380 :D 1d7kA 354 :S T0547 383 :DHLESIL 1d7kA 357 :GPTCDGL T0547 392 :FDL 1d7kA 366 :IVE T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 371 :DLPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLAIQDEVQERYLVNFSLF 1d7kA 402 :RPTIYYVMSGPAWQLMQQF Number of specific fragments extracted= 31 number of extra gaps= 22 total=3352 Will force an alignment to be made, even if fragment is small Number of alignments=137 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)L375 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)N601 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)D602 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)N603 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)G604 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)Y605 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)L606 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)K607 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 4 :YGIDI 1d7kA 9 :FDCHF T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITV 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIY T0547 132 :NGFKDRELINIGF 1d7kA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 1d7kA 125 :NNGVQMM T0547 156 :TIEGLNELEAI 1d7kA 132 :TFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 224 :LEQFT 1d7kA 189 :IDVVG T0547 230 :IHFHL 1d7kA 194 :VSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAV 1d7kA 228 :SMYLLDIGGGFPG T0547 281 :QFKNEK 1d7kA 241 :SEDVKL T0547 291 :TLREYANDVVFILKNIA 1d7kA 247 :KFEEITGVINPALDKYF T0547 310 :K 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDELYDLYKSIKPSN 1d7kA 322 :VYGSFNCILYDHAHVKPLLQ T0547 377 :Y 1d7kA 351 :Y T0547 380 :D 1d7kA 354 :S T0547 383 :DHLESIL 1d7kA 357 :GPTCDGL T0547 392 :FDL 1d7kA 366 :IVE T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 371 :DLPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LL 1d7kA 402 :RP T0547 546 :EVEGIIEAQ 1d7kA 404 :TIYYVMSGP T0547 593 :LGELYLFL 1d7kA 413 :AWQLMQQF Number of specific fragments extracted= 33 number of extra gaps= 22 total=3385 Will force an alignment to be made, even if fragment is small Number of alignments=138 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)R39 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)V31 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S32 Warning: unaligning (T0547)D41 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)S34 Warning: unaligning (T0547)G42 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S34 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)L375 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)Q448 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)S449 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)I609 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)G610 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)V611 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 4 :YGID 1d7kA 9 :FDCH T0547 24 :N 1d7kA 13 :F T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 46 :PL 1d7kA 39 :AF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITV 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIY T0547 132 :NGFKDRELINIGF 1d7kA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 1d7kA 125 :NNGVQMM T0547 156 :TIEGLNELEAI 1d7kA 132 :TFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 224 :LEQFT 1d7kA 189 :IDVVG T0547 230 :IHFHL 1d7kA 194 :VSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAV 1d7kA 228 :SMYLLDIGGGFPG T0547 281 :QFKNEK 1d7kA 241 :SEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDELYDLYK 1d7kA 322 :VYGSFNCILYDHAH T0547 368 :SIKPS 1d7kA 337 :KPLLQ T0547 377 :Y 1d7kA 351 :Y T0547 380 :D 1d7kA 354 :S T0547 383 :DHLESIL 1d7kA 357 :GPTCDGL T0547 392 :FDL 1d7kA 366 :IVE T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 371 :DLPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLAIQDEVQERYLVNFSLF 1d7kA 402 :RPTIYYVMSGPAWQLMQQF Number of specific fragments extracted= 32 number of extra gaps= 21 total=3417 Will force an alignment to be made, even if fragment is small Number of alignments=139 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)N18 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)G19 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)L375 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)N601 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)D602 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)N603 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)G604 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)Y605 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)L606 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)K607 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 20 :KVCIN 1d7kA 9 :FDCHF T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 44 :K 1d7kA 38 :D T0547 46 :PL 1d7kA 39 :AF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITV 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIY T0547 132 :NGFKDRELINIGF 1d7kA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 1d7kA 125 :NNGVQMM T0547 156 :TIEGLNELEAI 1d7kA 132 :TFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 224 :LEQFT 1d7kA 189 :IDVVG T0547 230 :IHFHL 1d7kA 194 :VSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAV 1d7kA 228 :SMYLLDIGGGFPG T0547 281 :QFKNEK 1d7kA 241 :SEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 310 :K 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDELYDLYKSIKPSN 1d7kA 322 :VYGSFNCILYDHAHVKPLLQ T0547 377 :Y 1d7kA 351 :Y T0547 380 :D 1d7kA 354 :S T0547 383 :DHLESIL 1d7kA 357 :GPTCDGL T0547 392 :FDL 1d7kA 366 :IVE T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 371 :DLPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLAIQDEVQER 1d7kA 402 :RPTIYYVMSGP T0547 453 :FWGLEQNF 1d7kA 413 :AWQLMQQF Number of specific fragments extracted= 33 number of extra gaps= 22 total=3450 Will force an alignment to be made, even if fragment is small Number of alignments=140 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S34 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)L375 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)K607 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)S608 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)I609 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)G610 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)V611 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 4 :YGIDI 1d7kA 9 :FDCHF T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 46 :PL 1d7kA 39 :AF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITV 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIY T0547 132 :NGFKDRELINIGF 1d7kA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 1d7kA 125 :NNGVQMM T0547 156 :TIEGLNELEAI 1d7kA 132 :TFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 224 :LEQFT 1d7kA 189 :IDVVG T0547 230 :IHFHL 1d7kA 194 :VSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAV 1d7kA 228 :SMYLLDIGGGFPG T0547 281 :QFKNEK 1d7kA 241 :SEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDELYDLYKS 1d7kA 322 :VYGSFNCILYDHAHV T0547 369 :IKPS 1d7kA 338 :PLLQ T0547 377 :Y 1d7kA 351 :Y T0547 380 :D 1d7kA 354 :S T0547 383 :DHLESIL 1d7kA 357 :GPTCDGL T0547 392 :FDL 1d7kA 366 :IVE T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 371 :DLPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLA 1d7kA 402 :RPT T0547 511 :LGFFLVGA 1d7kA 405 :IYYVMSGP T0547 574 :LNERISNS 1d7kA 413 :AWQLMQQF Number of specific fragments extracted= 34 number of extra gaps= 22 total=3484 Will force an alignment to be made, even if fragment is small Number of alignments=141 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)L375 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)H527 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)N528 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)L529 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)S608 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)I609 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)G610 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)V611 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 4 :YGIDI 1d7kA 9 :FDCHF T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITV 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIY T0547 132 :NGFKDRELINIGF 1d7kA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 1d7kA 125 :NNGVQMM T0547 156 :TIEGLNELEAI 1d7kA 132 :TFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 224 :LEQFT 1d7kA 189 :IDVVG T0547 230 :IHFHL 1d7kA 194 :VSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAV 1d7kA 228 :SMYLLDIGGGFPG T0547 281 :QFKNEK 1d7kA 241 :SEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDELYDLYKSIKPSN 1d7kA 322 :VYGSFNCILYDHAHVKPLLQ T0547 377 :Y 1d7kA 351 :Y T0547 380 :D 1d7kA 354 :S T0547 383 :DHLESIL 1d7kA 357 :GPTCDGL T0547 392 :FDL 1d7kA 366 :IVE T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 371 :DLPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLA 1d7kA 402 :RPT T0547 511 :LGFFLVGAYQEVLGMK 1d7kA 405 :IYYVMSGPAWQLMQQF Number of specific fragments extracted= 32 number of extra gaps= 22 total=3516 Will force an alignment to be made, even if fragment is small Number of alignments=142 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)L375 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)Q448 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)S449 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITV 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIY T0547 132 :NGFKDRELINIGF 1d7kA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 1d7kA 125 :NNGVQMM T0547 156 :TIEGLNELEAI 1d7kA 132 :TFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 224 :LEQFT 1d7kA 189 :IDVVG T0547 230 :IHFHL 1d7kA 194 :VSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAV 1d7kA 228 :SMYLLDIGGGFPG T0547 281 :QFKNEK 1d7kA 241 :SEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDELYDLYKSIKPSN 1d7kA 322 :VYGSFNCILYDHAHVKPLLQ T0547 377 :Y 1d7kA 351 :Y T0547 380 :D 1d7kA 354 :S T0547 383 :DHLESIL 1d7kA 357 :GPTCDGL T0547 392 :FDL 1d7kA 366 :IVE T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 371 :DLPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLAIQDEVQERYLVNFSLF 1d7kA 402 :RPTIYYVMSGPAWQLMQQF Number of specific fragments extracted= 30 number of extra gaps= 22 total=3546 Will force an alignment to be made, even if fragment is small Number of alignments=143 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)L375 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)L563 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)D564 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 T0547 22 :CIN 1d7kA 11 :CHF T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITV 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIY T0547 132 :NGFKDRELINIGF 1d7kA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 1d7kA 125 :NNGVQMM T0547 156 :TIEGLNELEAI 1d7kA 132 :TFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 224 :LEQFT 1d7kA 189 :IDVVG T0547 230 :IHFHL 1d7kA 194 :VSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAV 1d7kA 228 :SMYLLDIGGGFPG T0547 281 :QFKNEK 1d7kA 241 :SEDVKL T0547 291 :TLREYANDVVFILKNIA 1d7kA 247 :KFEEITGVINPALDKYF T0547 310 :K 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDELYDLYKSIKPSN 1d7kA 322 :VYGSFNCILYDHAHVKPLLQ T0547 377 :Y 1d7kA 351 :Y T0547 380 :D 1d7kA 354 :S T0547 383 :DHLESIL 1d7kA 357 :GPTCDGL T0547 392 :FDL 1d7kA 366 :IVE T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 371 :DLPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LL 1d7kA 402 :RP T0547 546 :EVEGIIEAQSILDTLED 1d7kA 404 :TIYYVMSGPAWQLMQQF Number of specific fragments extracted= 32 number of extra gaps= 22 total=3578 Will force an alignment to be made, even if fragment is small Number of alignments=144 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)R39 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)V31 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S32 Warning: unaligning (T0547)D41 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)S34 Warning: unaligning (T0547)G42 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S34 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)L375 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)Q448 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)S449 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 T0547 24 :N 1d7kA 13 :F T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 46 :PL 1d7kA 39 :AF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITV 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIY T0547 132 :NGFKDRELINIGF 1d7kA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 1d7kA 125 :NNGVQMM T0547 156 :TIEGLNELEAI 1d7kA 132 :TFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 224 :LEQFT 1d7kA 189 :IDVVG T0547 230 :IHFHL 1d7kA 194 :VSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAV 1d7kA 228 :SMYLLDIGGGFPG T0547 281 :QFKNEK 1d7kA 241 :SEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDELYDLYK 1d7kA 322 :VYGSFNCILYDHAH T0547 368 :SIKPS 1d7kA 337 :KPLLQ T0547 377 :Y 1d7kA 351 :Y T0547 380 :D 1d7kA 354 :S T0547 383 :DHLESIL 1d7kA 357 :GPTCDGL T0547 392 :FDL 1d7kA 366 :IVE T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 371 :DLPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLAIQDEVQERYLVNFSLF 1d7kA 402 :RPTIYYVMSGPAWQLMQQF Number of specific fragments extracted= 31 number of extra gaps= 21 total=3609 Will force an alignment to be made, even if fragment is small Number of alignments=145 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)L375 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 T0547 22 :CIN 1d7kA 11 :CHF T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 44 :K 1d7kA 38 :D T0547 46 :PL 1d7kA 39 :AF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITV 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIY T0547 132 :NGFKDRELINIGF 1d7kA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 1d7kA 125 :NNGVQMM T0547 156 :TIEGLNELEAI 1d7kA 132 :TFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 224 :LEQFT 1d7kA 189 :IDVVG T0547 230 :IHFHL 1d7kA 194 :VSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAV 1d7kA 228 :SMYLLDIGGGFPG T0547 281 :QFKNEK 1d7kA 241 :SEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 310 :K 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDELYDLYKSIKPSN 1d7kA 322 :VYGSFNCILYDHAHVKPLLQ T0547 377 :Y 1d7kA 351 :Y T0547 380 :D 1d7kA 354 :S T0547 383 :DHLESIL 1d7kA 357 :GPTCDGL T0547 392 :FDL 1d7kA 366 :IVE T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 371 :DLPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLAIQDEVQER 1d7kA 402 :RPTIYYVMSGP T0547 453 :FWGLEQ 1d7kA 413 :AWQLMQ Number of specific fragments extracted= 33 number of extra gaps= 21 total=3642 Will force an alignment to be made, even if fragment is small Number of alignments=146 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S34 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)L375 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 T0547 24 :N 1d7kA 13 :F T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 46 :PL 1d7kA 39 :AF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITV 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIY T0547 132 :NGFKDRELINIGF 1d7kA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 1d7kA 125 :NNGVQMM T0547 156 :TIEGLNELEAI 1d7kA 132 :TFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 224 :LEQFT 1d7kA 189 :IDVVG T0547 230 :IHFHL 1d7kA 194 :VSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAV 1d7kA 228 :SMYLLDIGGGFPG T0547 281 :QFKNEK 1d7kA 241 :SEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDELYDLYKS 1d7kA 322 :VYGSFNCILYDHAHV T0547 369 :IKPS 1d7kA 338 :PLLQ T0547 377 :Y 1d7kA 351 :Y T0547 380 :D 1d7kA 354 :S T0547 383 :DHLESIL 1d7kA 357 :GPTCDGL T0547 392 :FDL 1d7kA 366 :IVE T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 371 :DLPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLA 1d7kA 402 :RPT T0547 511 :LGFFL 1d7kA 405 :IYYVM T0547 585 :NDKQKKHILG 1d7kA 410 :SGPAWQLMQQ Number of specific fragments extracted= 34 number of extra gaps= 21 total=3676 Will force an alignment to be made, even if fragment is small Number of alignments=147 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)G262 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L297 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K353 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R343 Warning: unaligning (T0547)L375 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R343 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNF 1d7kA 43 :ADLGDILKKHLRWLKAL T0547 77 :G 1d7kA 60 :P T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITV 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIY T0547 132 :NGFKDRELINIGF 1d7kA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 1d7kA 125 :NNGVQMM T0547 156 :TIEGLNELEAI 1d7kA 132 :TFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 224 :LEQFT 1d7kA 189 :IDVVG T0547 230 :IHFHL 1d7kA 194 :VSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAV 1d7kA 228 :SMYLLDIGGGFPG T0547 281 :QFKNEK 1d7kA 241 :SEDVKL T0547 291 :TLREYANDVVFILKNIAE 1d7kA 247 :KFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 345 :AENKLIL 1d7kA 312 :QTFMYYV T0547 354 :QNPKLIDELYDLYKSIKPSN 1d7kA 322 :VYGSFNCILYDHAHVKPLLQ T0547 377 :Y 1d7kA 351 :Y T0547 380 :D 1d7kA 354 :S T0547 383 :DHLESIL 1d7kA 357 :GPTCDGL T0547 392 :FDL 1d7kA 366 :IVE T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNP 1d7kA 371 :DLPEMHVGDWMLFENMGAYTVAAASTFNG T0547 429 :LLA 1d7kA 402 :RPT T0547 511 :LGFFLVGAYQEVLGM 1d7kA 405 :IYYVMSGPAWQLMQQ Number of specific fragments extracted= 31 number of extra gaps= 21 total=3707 Will force an alignment to be made, even if fragment is small Number of alignments=148 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)N18 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)G19 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)S449 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)D452 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)F453 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)W454 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)G455 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 20 :KVCIN 1d7kA 9 :FDCHF T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNFN 1d7kA 43 :ADLGDILKKHLRWLKALP T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQ T0547 154 :TLTIEGLNELEAI 1d7kA 130 :MMTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 225 :EQFTMIHFHL 1d7kA 189 :IDVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAVEY 1d7kA 228 :SMYLLDIGGGFPGSE T0547 287 :SRNYTLREYANDVVFILKNI 1d7kA 243 :DVKLKFEEITGVINPALDKY T0547 309 :QK 1d7kA 263 :FP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 344 :YAENKLI 1d7kA 312 :QTFMYYV T0547 353 :KQNPKLIDELYDLYKSIKPS 1d7kA 321 :GVYGSFNCILYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 400 :QDR 1d7kA 371 :DLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPA 1d7kA 375 :MHVGDWMLFENMGAYTVAAASTFNG T0547 430 :LAIQDEVQERYLVNFSLFQ 1d7kA 402 :RPTIYYVMSGPAWQLMQQF Number of specific fragments extracted= 29 number of extra gaps= 23 total=3736 Will force an alignment to be made, even if fragment is small Number of alignments=149 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)K17 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)N18 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)I34 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)K36 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)V31 Warning: unaligning (T0547)R39 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S32 Warning: unaligning (T0547)D40 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)S34 Warning: unaligning (T0547)D41 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S34 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)S449 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)D452 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)F453 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)W454 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)G455 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 19 :GKVCI 1d7kA 9 :FDCHF T0547 29 :PAII 1d7kA 22 :DILD T0547 35 :V 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNFN 1d7kA 43 :ADLGDILKKHLRWLKALP T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQ T0547 154 :TLTIEGLNELEAI 1d7kA 130 :MMTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 225 :EQFTMIHFHL 1d7kA 189 :IDVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAVEY 1d7kA 228 :SMYLLDIGGGFPGSE T0547 283 :KNEKS 1d7kA 243 :DVKLK T0547 292 :LREYANDVVFIL 1d7kA 248 :FEEITGVINPAL T0547 308 :EQK 1d7kA 260 :DKY T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 344 :YAENKLI 1d7kA 312 :QTFMYYV T0547 353 :KQNPKLIDELYDLYKSIKPS 1d7kA 321 :GVYGSFNCILYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 400 :QDR 1d7kA 371 :DLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPA 1d7kA 375 :MHVGDWMLFENMGAYTVAAASTFNG T0547 430 :LAIQDEVQERYLVNFSLFQ 1d7kA 402 :RPTIYYVMSGPAWQLMQQF Number of specific fragments extracted= 30 number of extra gaps= 22 total=3766 Will force an alignment to be made, even if fragment is small Number of alignments=150 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)M1 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E8 Warning: unaligning (T0547)N18 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)I34 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)K36 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)V31 Warning: unaligning (T0547)R39 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S32 Warning: unaligning (T0547)D40 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)S34 Warning: unaligning (T0547)D41 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S34 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)S449 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)D452 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)F453 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)W454 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)G455 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 19 :GKVCI 1d7kA 9 :FDCHF T0547 29 :PAII 1d7kA 22 :DILD T0547 35 :V 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNFN 1d7kA 43 :ADLGDILKKHLRWLKALP T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQ T0547 154 :TLTIEGLNELEAI 1d7kA 130 :MMTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 225 :EQFTMIHFHL 1d7kA 189 :IDVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAVEYSQ 1d7kA 228 :SMYLLDIGGGFPGSEDV T0547 289 :NYTLREYANDVVFILKNIAE 1d7kA 245 :KLKFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 344 :YAENKLI 1d7kA 312 :QTFMYYV T0547 353 :KQNPKLIDELYDLYKSIKPS 1d7kA 321 :GVYGSFNCILYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 400 :QDR 1d7kA 371 :DLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPA 1d7kA 375 :MHVGDWMLFENMGAYTVAAASTFNG T0547 430 :LAIQDEVQERYLVNFSLFQ 1d7kA 402 :RPTIYYVMSGPAWQLMQQF Number of specific fragments extracted= 28 number of extra gaps= 22 total=3794 Will force an alignment to be made, even if fragment is small Number of alignments=151 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)N11 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)E12 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D15 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)I34 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)K36 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)V31 Warning: unaligning (T0547)R39 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S32 Warning: unaligning (T0547)D40 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)S34 Warning: unaligning (T0547)D41 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S34 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)S449 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)D452 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)F453 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)W454 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)G455 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 13 :NFI 1d7kA 9 :FDC T0547 22 :CI 1d7kA 12 :HF T0547 29 :PAII 1d7kA 22 :DILD T0547 35 :V 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNFN 1d7kA 43 :ADLGDILKKHLRWLKALP T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQ T0547 154 :TLTIEGLNELEAI 1d7kA 130 :MMTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 225 :EQFTMIHFHL 1d7kA 189 :IDVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAVEYSQ 1d7kA 228 :SMYLLDIGGGFPGSEDV T0547 285 :E 1d7kA 245 :K T0547 290 :YTLREYANDVVFILKNI 1d7kA 246 :LKFEEITGVINPALDKY T0547 309 :QK 1d7kA 263 :FP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 344 :YAENKLI 1d7kA 312 :QTFMYYV T0547 353 :KQNPKLIDELYDLYKSIKPS 1d7kA 321 :GVYGSFNCILYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 400 :QDR 1d7kA 371 :DLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPA 1d7kA 375 :MHVGDWMLFENMGAYTVAAASTFNG T0547 430 :LAIQDEVQERYLVNFSLFQ 1d7kA 402 :RPTIYYVMSGPAWQLMQQF Number of specific fragments extracted= 31 number of extra gaps= 22 total=3825 Will force an alignment to be made, even if fragment is small Number of alignments=152 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)Y25 because first residue in template chain is (1d7kA)E7 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)K582 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)L583 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)V584 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)N585 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)D586 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)K587 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)Q588 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 27 :KK 1d7kA 9 :FD T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNFN 1d7kA 43 :ADLGDILKKHLRWLKALP T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQ T0547 154 :TLTIEGLNELEAI 1d7kA 130 :MMTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 225 :EQFTMIHFHL 1d7kA 189 :IDVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAVEYSQ 1d7kA 228 :SMYLLDIGGGFPGSEDV T0547 289 :NYTLREYANDVVFILKNIA 1d7kA 245 :KLKFEEITGVINPALDKYF T0547 310 :K 1d7kA 264 :P T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 344 :YAENKLI 1d7kA 312 :QTFMYYV T0547 353 :KQNPKLIDELY 1d7kA 321 :GVYGSFNCILY T0547 367 :KSIKPS 1d7kA 332 :DHAHVK T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 400 :QDR 1d7kA 371 :DLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPA 1d7kA 375 :MHVGDWMLFENMGAYTVAAASTFNG T0547 430 :LA 1d7kA 402 :RP T0547 475 :SASIWD 1d7kA 404 :TIYYVM T0547 572 :DILNERISNS 1d7kA 411 :GPAWQLMQQF Number of specific fragments extracted= 32 number of extra gaps= 23 total=3857 Will force an alignment to be made, even if fragment is small Number of alignments=153 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)M1 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E8 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E8 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)S449 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)D452 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)F453 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)W454 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 Warning: unaligning (T0547)G455 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P427 T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNFN 1d7kA 43 :ADLGDILKKHLRWLKALP T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQ T0547 154 :TLTIEGLNELEAI 1d7kA 130 :MMTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 225 :EQFTMIHFHL 1d7kA 189 :IDVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAVEYSQF 1d7kA 228 :SMYLLDIGGGFPGSEDVK T0547 290 :YTLREYANDVVFILKNI 1d7kA 246 :LKFEEITGVINPALDKY T0547 309 :QK 1d7kA 263 :FP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 344 :YAENKLI 1d7kA 312 :QTFMYYV T0547 353 :KQNPKLIDELYDLYKSIKPS 1d7kA 321 :GVYGSFNCILYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 400 :QDR 1d7kA 371 :DLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPA 1d7kA 375 :MHVGDWMLFENMGAYTVAAASTFNG T0547 430 :LAIQDEVQERYLVNFSLFQ 1d7kA 402 :RPTIYYVMSGPAWQLMQQF Number of specific fragments extracted= 28 number of extra gaps= 23 total=3885 Will force an alignment to be made, even if fragment is small Number of alignments=154 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)S449 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)D452 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNFN 1d7kA 43 :ADLGDILKKHLRWLKALP T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQ T0547 154 :TLTIEGLNELEAI 1d7kA 130 :MMTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 225 :EQFTMIHFHL 1d7kA 189 :IDVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAVEY 1d7kA 228 :SMYLLDIGGGFPGSE T0547 287 :SRNYTLREYANDVVFILKNI 1d7kA 243 :DVKLKFEEITGVINPALDKY T0547 309 :QK 1d7kA 263 :FP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 344 :YAENKLI 1d7kA 312 :QTFMYYV T0547 353 :KQNPKLIDELYDLYKSIKPS 1d7kA 321 :GVYGSFNCILYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 400 :QDR 1d7kA 371 :DLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPA 1d7kA 375 :MHVGDWMLFENMGAYTVAAASTFNG T0547 430 :LAIQDEVQERYLVNFSLFQ 1d7kA 402 :RPTIYYVMSGPAWQLMQQF Number of specific fragments extracted= 26 number of extra gaps= 20 total=3911 Will force an alignment to be made, even if fragment is small Number of alignments=155 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D15 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)I34 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)K36 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)V31 Warning: unaligning (T0547)R39 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S32 Warning: unaligning (T0547)D40 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)S34 Warning: unaligning (T0547)D41 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S34 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)S449 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)D452 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)F453 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)W454 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 T0547 29 :PAII 1d7kA 22 :DILD T0547 35 :V 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNFN 1d7kA 43 :ADLGDILKKHLRWLKALP T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQ T0547 154 :TLTIEGLNELEAI 1d7kA 130 :MMTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 225 :EQFTMIHFHL 1d7kA 189 :IDVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAVEY 1d7kA 228 :SMYLLDIGGGFPGSE T0547 283 :KNEKS 1d7kA 243 :DVKLK T0547 292 :LREYANDVVFIL 1d7kA 248 :FEEITGVINPAL T0547 308 :EQK 1d7kA 260 :DKY T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 344 :YAENKLI 1d7kA 312 :QTFMYYV T0547 353 :KQNPKLIDELYDLYKSIKPS 1d7kA 321 :GVYGSFNCILYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 400 :QDR 1d7kA 371 :DLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPA 1d7kA 375 :MHVGDWMLFENMGAYTVAAASTFNG T0547 430 :LAIQDEVQERYLVNFSLFQ 1d7kA 402 :RPTIYYVMSGPAWQLMQQF Number of specific fragments extracted= 29 number of extra gaps= 22 total=3940 Will force an alignment to be made, even if fragment is small Number of alignments=156 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)I34 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)K36 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)V31 Warning: unaligning (T0547)R39 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S32 Warning: unaligning (T0547)D40 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)S34 Warning: unaligning (T0547)D41 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S34 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)S449 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)D452 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 T0547 27 :KKPAII 1d7kA 20 :AKDILD T0547 35 :V 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNFN 1d7kA 43 :ADLGDILKKHLRWLKALP T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQ T0547 154 :TLTIEGLNELEAI 1d7kA 130 :MMTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 225 :EQFTMIHFHL 1d7kA 189 :IDVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAVEYSQ 1d7kA 228 :SMYLLDIGGGFPGSEDV T0547 289 :NYTLREYANDVVFILKNIAE 1d7kA 245 :KLKFEEITGVINPALDKYFP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 344 :YAENKLI 1d7kA 312 :QTFMYYV T0547 353 :KQNPKLIDELYDLYKSIKPS 1d7kA 321 :GVYGSFNCILYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 400 :QDR 1d7kA 371 :DLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPA 1d7kA 375 :MHVGDWMLFENMGAYTVAAASTFNG T0547 430 :LAIQDEVQERYLVNFSLFQ 1d7kA 402 :RPTIYYVMSGPAWQLMQQF Number of specific fragments extracted= 27 number of extra gaps= 22 total=3967 Will force an alignment to be made, even if fragment is small Number of alignments=157 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)I34 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)K36 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)V31 Warning: unaligning (T0547)R39 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S32 Warning: unaligning (T0547)D40 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)S34 Warning: unaligning (T0547)D41 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S34 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 Warning: unaligning (T0547)S449 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)N422 Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)N422 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P423 Warning: unaligning (T0547)D452 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D424 Warning: unaligning (T0547)F453 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)F425 Warning: unaligning (T0547)W454 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P426 T0547 27 :KKPAII 1d7kA 20 :AKDILD T0547 35 :V 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNFN 1d7kA 43 :ADLGDILKKHLRWLKALP T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQ T0547 154 :TLTIEGLNELEAI 1d7kA 130 :MMTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 225 :EQFTMIHFHL 1d7kA 189 :IDVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAVEYSQ 1d7kA 228 :SMYLLDIGGGFPGSEDV T0547 285 :E 1d7kA 245 :K T0547 290 :YTLREYANDVVFILKNI 1d7kA 246 :LKFEEITGVINPALDKY T0547 309 :QK 1d7kA 263 :FP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 344 :YAENKLI 1d7kA 312 :QTFMYYV T0547 353 :KQNPKLIDELYDLYKSIKPS 1d7kA 321 :GVYGSFNCILYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 400 :QDR 1d7kA 371 :DLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPA 1d7kA 375 :MHVGDWMLFENMGAYTVAAASTFNG T0547 430 :LAIQDEVQERYLVNFSLFQ 1d7kA 402 :RPTIYYVMSGPAWQLMQQF Number of specific fragments extracted= 29 number of extra gaps= 22 total=3996 Will force an alignment to be made, even if fragment is small Number of alignments=158 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E16 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G17 Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F18 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)T19 Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 T0547 31 :IIDIVK 1d7kA 20 :AKDILD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNFN 1d7kA 43 :ADLGDILKKHLRWLKALP T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQ T0547 154 :TLTIEGLNELEAI 1d7kA 130 :MMTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 225 :EQFTMIHFHL 1d7kA 189 :IDVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAVEYSQ 1d7kA 228 :SMYLLDIGGGFPGSEDV T0547 289 :NYTLREYANDVVFILKNIA 1d7kA 245 :KLKFEEITGVINPALDKYF T0547 310 :K 1d7kA 264 :P T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 344 :YAENKLI 1d7kA 312 :QTFMYYV T0547 353 :KQNPKLIDELY 1d7kA 321 :GVYGSFNCILY T0547 367 :KSIKPS 1d7kA 332 :DHAHVK T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 400 :QDR 1d7kA 371 :DLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPA 1d7kA 375 :MHVGDWMLFENMGAYTVAAASTFNG T0547 430 :L 1d7kA 402 :R T0547 475 :SASIWD 1d7kA 404 :TIYYVM T0547 572 :DILNERISNS 1d7kA 411 :GPAWQLMQQF Number of specific fragments extracted= 31 number of extra gaps= 22 total=4027 Will force an alignment to be made, even if fragment is small Number of alignments=159 # 1d7kA read from all-align.a2m # found chain 1d7kA in template set Warning: unaligning (T0547)E37 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)K27 Warning: unaligning (T0547)L38 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)K27 Warning: unaligning (T0547)D40 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E30 Warning: unaligning (T0547)D41 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E30 Warning: unaligning (T0547)G42 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D36 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K37 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V42 Warning: unaligning (T0547)L49 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V42 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V62 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V62 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1d7kA)C70 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1d7kA)C70 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)G86 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)G86 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)R144 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)R144 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D159 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D159 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)S160 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K161 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)A162 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)C164 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)C164 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L166 Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)L166 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S200 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S200 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C202 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C202 Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)F227 Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)F227 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)D266 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)D266 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)V269 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)V269 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)L297 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E311 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)D320 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)D320 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)P344 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)K345 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d7kA)E348 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d7kA)E348 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)S353 Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)S353 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)W356 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)W356 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)R365 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)R365 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)C370 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)C370 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE in next template residue (1d7kA)Q401 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE at template residue (1d7kA)Q401 T0547 35 :VK 1d7kA 24 :LD T0547 39 :R 1d7kA 28 :I T0547 45 :GPL 1d7kA 38 :DAF T0547 50 :RFPHLIQKQIENIYGNFN 1d7kA 43 :ADLGDILKKHLRWLKALP T0547 80 :NAVYP 1d7kA 63 :TPFYA T0547 88 :NQYPGFVKNLVKLG 1d7kA 71 :NDSKAIVKTLAATG T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1d7kA 87 :FDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQ T0547 154 :TLTIEGLNELEAI 1d7kA 130 :MMTFDSEVELMKV T0547 169 :IAKE 1d7kA 145 :AHPK T0547 178 :PNIGLRVRL 1d7kA 149 :AKLVLRIAT T0547 201 :NSKFGLTSTELIEAVNLLKENK 1d7kA 167 :SVKFGATLRTSRLLLERAKELN T0547 225 :EQFTMIHFHL 1d7kA 189 :IDVVGVSFHV T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1d7kA 203 :TDPETFVQAISDARCVFDMGAEV T0547 265 :NLKAINLGGGLAVEYSQF 1d7kA 228 :SMYLLDIGGGFPGSEDVK T0547 290 :YTLREYANDVVFILKNI 1d7kA 246 :LKFEEITGVINPALDKY T0547 309 :QK 1d7kA 263 :FP T0547 313 :L 1d7kA 267 :S T0547 316 :DIFIESGRFVAANHAVLIAPVLELFS 1d7kA 270 :RIIAEPGRYYVASAFTLAVNIIAKKI T0547 344 :YAENKLI 1d7kA 312 :QTFMYYV T0547 353 :KQNPKLIDELYDLYKSIKPS 1d7kA 321 :GVYGSFNCILYDHAHVKPLL T0547 375 :L 1d7kA 346 :P T0547 378 :LHD 1d7kA 349 :RYY T0547 383 :D 1d7kA 354 :S T0547 386 :ESILTLF 1d7kA 357 :GPTCDGL T0547 395 :GYV 1d7kA 366 :IVE T0547 400 :QDR 1d7kA 371 :DLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPA 1d7kA 375 :MHVGDWMLFENMGAYTVAAASTFNG T0547 430 :LAI 1d7kA 402 :RPT Number of specific fragments extracted= 28 number of extra gaps= 21 total=4055 Will force an alignment to be made, even if fragment is small Number of alignments=160 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)V442 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)N443 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 1 :MMDYGIDIWGNENF 1hkvA 4 :LLHLAPNVWPRNTT T0547 18 :NGKVCINYEKKPAIIDI 1hkvA 21 :VGVVCIAGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 1hkvA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 62 :GSGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAY 1hkvA 88 :LCLDVCTGGELAVALHA T0547 123 :NNEGAPITVNGFKDRELINIGF 1hkvA 106 :FPPERITLHGNNKSVSELTAAV T0547 150 :GHNI 1hkvA 128 :KAGV T0547 155 :LTIEGLNELEAIIDIAKERFK 1hkvA 134 :IVVDSMTEIERLDAIAGEAGI T0547 177 :KPNIGLRVRLHSAGVGIW 1hkvA 155 :VQDVLVRLTVGVEAHTHE T0547 195 :AKSGGINSKFGLTSTE 1hkvA 174 :ISTAHEDQKFGLSVAS T0547 211 :LIEAVNLLKENKLLE 1hkvA 192 :AMAAVRRVFATDHLR T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRK 1hkvA 207 :LVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVG T0547 261 :MGAKNLKAINLGGG 1hkvA 245 :EKTAQIATVDLGGG T0547 277 :VEYSQF 1hkvA 261 :ISYLPS T0547 287 :SRNYTLREYANDVVFILKNIA 1hkvA 267 :DDPPPIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 430 :LAIQDEVQERYL 1hkvA 323 :DVSATAHRRYVS T0547 444 :FSLFQSM 1hkvA 337 :GGMSDNI T0547 452 :DFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSK 1hkvA 344 :RTALYGAQYDVRLVSRVSDAPPVPARLVGKHCESGDIIVRDT T0547 499 :LH 1hkvA 387 :VP T0547 501 :DV 1hkvA 390 :DI T0547 506 :KENYFLGFFLVGAYQEVLGMKHNLFTHPTEAII 1hkvA 392 :RPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAV T0547 543 :KGYEVEGIIEAQSILDTLED 1hkvA 425 :HAGNARLVLRRETVDDLLSL Number of specific fragments extracted= 23 number of extra gaps= 5 total=4078 Will force an alignment to be made, even if fragment is small Number of alignments=161 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)V442 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)N443 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 6 :IDIWGNENF 1hkvA 9 :PNVWPRNTT T0547 18 :NGKVCINYEKKPAIIDI 1hkvA 21 :VGVVCIAGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 1hkvA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 62 :GSGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAY 1hkvA 88 :LCLDVCTGGELAVALHA T0547 123 :NNEGAPITVNGFKDRELINIGF 1hkvA 106 :FPPERITLHGNNKSVSELTAAV T0547 150 :GHNI 1hkvA 128 :KAGV T0547 155 :LTIEGLNELEAIIDIAKERFK 1hkvA 134 :IVVDSMTEIERLDAIAGEAGI T0547 177 :KPNIGLRVRLHSAGVGIW 1hkvA 155 :VQDVLVRLTVGVEAHTHE T0547 195 :AKSGGINSKFGLTSTE 1hkvA 174 :ISTAHEDQKFGLSVAS T0547 211 :LIEAVNLLKENKLLE 1hkvA 192 :AMAAVRRVFATDHLR T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRK 1hkvA 207 :LVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVG T0547 261 :MGAKNLKAINLGGG 1hkvA 245 :EKTAQIATVDLGGG T0547 277 :VEYSQF 1hkvA 261 :ISYLPS T0547 287 :SRNYTLREYANDVVFILKNIA 1hkvA 267 :DDPPPIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 430 :LAIQDEVQERYL 1hkvA 323 :DVSATAHRRYVS T0547 444 :FSLFQSM 1hkvA 337 :GGMSDNI T0547 452 :DFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSK 1hkvA 344 :RTALYGAQYDVRLVSRVSDAPPVPARLVGKHCESGDIIVRDT T0547 499 :LH 1hkvA 387 :VP T0547 501 :DV 1hkvA 390 :DI T0547 506 :KENYFLGFFLVGAYQEVLGMKHNLFTHPTEAII 1hkvA 392 :RPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAV T0547 543 :KGYEVEGIIEAQSILDTLE 1hkvA 425 :HAGNARLVLRRETVDDLLS Number of specific fragments extracted= 23 number of extra gaps= 5 total=4101 Will force an alignment to be made, even if fragment is small Number of alignments=162 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)D7 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (1hkvA)R447 T0547 8 :IWGNENFIIKNGKVC 1hkvA 3 :ELLHLAPNVWPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKS T0547 139 :LINIGF 1hkvA 120 :VSELTA T0547 146 :AAEMGH 1hkvA 126 :AVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLH 1hkvA 152 :AGIVQDVLVRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 1hkvA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 1hkvA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK 1hkvA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGP T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEY 1hkvA 261 :ISY T0547 282 :FKNEKSR 1hkvA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 1hkvA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 1hkvA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNAL 1hkvA 347 :LYGAQYDVRLVSRV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 1hkvA 362 :DAPPVPARLVGKHCESGDIIVRD T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 1hkvA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 23 number of extra gaps= 5 total=4124 Will force an alignment to be made, even if fragment is small Number of alignments=163 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (1hkvA)R447 T0547 3 :DYGIDI 1hkvA 3 :ELLHLA T0547 17 :KNGKVC 1hkvA 12 :WPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGN 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAA T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 61 :FGSGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKS T0547 139 :LINIGF 1hkvA 120 :VSELTA T0547 146 :AAEMGH 1hkvA 126 :AVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLH 1hkvA 152 :AGIVQDVLVRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 1hkvA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 1hkvA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1hkvA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGE T0547 262 :GA 1hkvA 247 :TA T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEY 1hkvA 261 :ISY T0547 282 :FKNEKSR 1hkvA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 1hkvA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 1hkvA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNAL 1hkvA 347 :LYGAQYDVRLVSRV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 1hkvA 362 :DAPPVPARLVGKHCESGDIIVRD T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 1hkvA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 25 number of extra gaps= 5 total=4149 Will force an alignment to be made, even if fragment is small Number of alignments=164 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (1hkvA)R447 T0547 12 :ENFIIKN 1hkvA 3 :ELLHLAP T0547 19 :GKVC 1hkvA 14 :RNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSV T0547 140 :INIGF 1hkvA 121 :SELTA T0547 146 :AAEMGH 1hkvA 126 :AVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLH 1hkvA 152 :AGIVQDVLVRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTS 1hkvA 167 :EAHTHEFISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENKLL 1hkvA 190 :GAAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK 1hkvA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGP T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEY 1hkvA 261 :ISY T0547 282 :FKNEKSR 1hkvA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 1hkvA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 1hkvA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNAL 1hkvA 347 :LYGAQYDVRLVSRV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 1hkvA 362 :DAPPVPARLVGKHCESGDIIVRD T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 1hkvA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 24 number of extra gaps= 5 total=4173 Will force an alignment to be made, even if fragment is small Number of alignments=165 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (1hkvA)R447 T0547 3 :DYGIDI 1hkvA 4 :LLHLAP T0547 16 :IKNGKVC 1hkvA 11 :VWPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKS T0547 139 :LINIGF 1hkvA 120 :VSELTA T0547 146 :AAEMGH 1hkvA 126 :AVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLH 1hkvA 152 :AGIVQDVLVRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 1hkvA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 1hkvA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELR 1hkvA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 1hkvA 241 :EFGPE T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEY 1hkvA 261 :ISY T0547 282 :FKNEKSR 1hkvA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 1hkvA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 1hkvA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNAL 1hkvA 347 :LYGAQYDVRLVSRV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 1hkvA 362 :DAPPVPARLVGKHCESGDIIVRD T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 1hkvA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 25 number of extra gaps= 5 total=4198 Will force an alignment to be made, even if fragment is small Number of alignments=166 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)N11 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 12 :ENFIIKN 1hkvA 3 :ELLHLAP T0547 19 :GKVC 1hkvA 14 :RNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSV T0547 140 :INIGF 1hkvA 121 :SELTA T0547 146 :AAEMGH 1hkvA 126 :AVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLH 1hkvA 152 :AGIVQDVLVRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 1hkvA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 1hkvA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1hkvA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGE T0547 263 :AKNLKAINLGGG 1hkvA 247 :TAQIATVDLGGG T0547 277 :VEY 1hkvA 261 :ISY T0547 282 :FKNEKSR 1hkvA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 1hkvA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 1hkvA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNAL 1hkvA 347 :LYGAQYDVRLVSRV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 1hkvA 362 :DAPPVPARLVGKHCESGDIIVRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1hkvA 388 :PDDIRPGDLVAVAATGAYCYSLSSRYN T0547 530 :FTHPT 1hkvA 416 :VGRPA T0547 537 :IISINEKGYEVEG 1hkvA 421 :VVAVHAGNARLVL T0547 552 :E 1hkvA 434 :R T0547 583 :LVNDKQKK 1hkvA 435 :RETVDDLL Number of specific fragments extracted= 26 number of extra gaps= 5 total=4224 Will force an alignment to be made, even if fragment is small Number of alignments=167 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (1hkvA)R447 T0547 3 :DYGIDIWG 1hkvA 3 :ELLHLAPN T0547 16 :IKNGKVC 1hkvA 11 :VWPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKS T0547 139 :LINIGF 1hkvA 120 :VSELTA T0547 146 :AAEMGH 1hkvA 126 :AVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLH 1hkvA 152 :AGIVQDVLVRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 1hkvA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 1hkvA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1hkvA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGE T0547 262 :GA 1hkvA 247 :TA T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEY 1hkvA 261 :ISY T0547 282 :FKNEKSR 1hkvA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 1hkvA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 1hkvA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNAL 1hkvA 347 :LYGAQYDVRLVSRV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 1hkvA 362 :DAPPVPARLVGKHCESGDIIVRD T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 1hkvA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 25 number of extra gaps= 5 total=4249 Will force an alignment to be made, even if fragment is small Number of alignments=168 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (1hkvA)R447 T0547 15 :IIKNGKVC 1hkvA 10 :NVWPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKS T0547 139 :LINIGF 1hkvA 120 :VSELTA T0547 146 :AAEMGH 1hkvA 126 :AVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLH 1hkvA 152 :AGIVQDVLVRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 1hkvA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 1hkvA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK 1hkvA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGP T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEY 1hkvA 261 :ISY T0547 282 :FKNEKSR 1hkvA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 1hkvA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 1hkvA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNAL 1hkvA 347 :LYGAQYDVRLVSRV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 1hkvA 362 :DAPPVPARLVGKHCESGDIIVRD T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 1hkvA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 23 number of extra gaps= 5 total=4272 Will force an alignment to be made, even if fragment is small Number of alignments=169 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 17 :KNGKVC 1hkvA 12 :WPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGN 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAA T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 61 :FGSGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKS T0547 139 :LINIGF 1hkvA 120 :VSELTA T0547 146 :AAEMGH 1hkvA 126 :AVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLH 1hkvA 152 :AGIVQDVLVRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 1hkvA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 1hkvA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1hkvA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGE T0547 262 :GA 1hkvA 247 :TA T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEY 1hkvA 261 :ISY T0547 282 :FKNEKSR 1hkvA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 1hkvA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 1hkvA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNAL 1hkvA 347 :LYGAQYDVRLVSRV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 1hkvA 362 :DAPPVPARLVGKHCESGDIIVRD T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 1hkvA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 24 number of extra gaps= 5 total=4296 Will force an alignment to be made, even if fragment is small Number of alignments=170 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 19 :GKVC 1hkvA 14 :RNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSV T0547 140 :INIGF 1hkvA 121 :SELTA T0547 146 :AAEMGH 1hkvA 126 :AVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLH 1hkvA 152 :AGIVQDVLVRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTS 1hkvA 167 :EAHTHEFISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENKLL 1hkvA 190 :GAAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK 1hkvA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGP T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEY 1hkvA 261 :ISY T0547 282 :FKNEKSR 1hkvA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 1hkvA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 1hkvA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNAL 1hkvA 347 :LYGAQYDVRLVSRV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 1hkvA 362 :DAPPVPARLVGKHCESGDIIVRD T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 1hkvA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 23 number of extra gaps= 5 total=4319 Will force an alignment to be made, even if fragment is small Number of alignments=171 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 19 :GKVC 1hkvA 14 :RNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKS T0547 139 :LINIGF 1hkvA 120 :VSELTA T0547 146 :AAEMGH 1hkvA 126 :AVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLH 1hkvA 152 :AGIVQDVLVRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 1hkvA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 1hkvA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELR 1hkvA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 1hkvA 241 :EFGPE T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEY 1hkvA 261 :ISY T0547 282 :FKNEKSR 1hkvA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 1hkvA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 1hkvA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNAL 1hkvA 347 :LYGAQYDVRLVSRV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 1hkvA 362 :DAPPVPARLVGKHCESGDIIVRD T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 1hkvA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 24 number of extra gaps= 5 total=4343 Will force an alignment to be made, even if fragment is small Number of alignments=172 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 19 :GKVC 1hkvA 14 :RNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSV T0547 140 :INIGF 1hkvA 121 :SELTA T0547 146 :AAEMGH 1hkvA 126 :AVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLH 1hkvA 152 :AGIVQDVLVRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 1hkvA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 1hkvA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1hkvA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGE T0547 263 :AKNLKAINLGGG 1hkvA 247 :TAQIATVDLGGG T0547 277 :VEY 1hkvA 261 :ISY T0547 282 :FKNEKSR 1hkvA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 1hkvA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 1hkvA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNAL 1hkvA 347 :LYGAQYDVRLVSRV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 1hkvA 362 :DAPPVPARLVGKHCESGDIIVRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1hkvA 388 :PDDIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PA 1hkvA 417 :GR T0547 533 :PT 1hkvA 419 :PA T0547 537 :IISINEKGYEVEG 1hkvA 421 :VVAVHAGNARLVL T0547 582 :KLVNDKQKK 1hkvA 434 :RRETVDDLL Number of specific fragments extracted= 25 number of extra gaps= 5 total=4368 Will force an alignment to be made, even if fragment is small Number of alignments=173 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 17 :KNGKVC 1hkvA 12 :WPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKS T0547 139 :LINIGF 1hkvA 120 :VSELTA T0547 146 :AAEMGH 1hkvA 126 :AVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLH 1hkvA 152 :AGIVQDVLVRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 1hkvA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 1hkvA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1hkvA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGE T0547 262 :GA 1hkvA 247 :TA T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEY 1hkvA 261 :ISY T0547 282 :FKNEKSR 1hkvA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 1hkvA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 1hkvA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNAL 1hkvA 347 :LYGAQYDVRLVSRV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 1hkvA 362 :DAPPVPARLVGKHCESGDIIVRD T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 1hkvA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 24 number of extra gaps= 5 total=4392 Will force an alignment to be made, even if fragment is small Number of alignments=174 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 1 :MMDYGIDIWGNENF 1hkvA 4 :LLHLAPNVWPRNTT T0547 18 :NGKVCI 1hkvA 21 :VGVVCI T0547 27 :KKPAIIDIVKE 1hkvA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 38 :YGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 1hkvA 118 :KSVSELTAAV T0547 148 :EMGH 1hkvA 128 :KAGV T0547 154 :T 1hkvA 134 :I T0547 156 :TIEGLNELEAIIDIAKE 1hkvA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1hkvA 152 :AGIVQDVLVRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTS 1hkvA 179 :EDQKFGLSV T0547 209 :TELIEAVNLLKENKLLEQFT 1hkvA 190 :GAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 1hkvA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 1hkvA 241 :EFGPE T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEYSQFKNEK 1hkvA 261 :ISYLPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 1hkvA 329 :HRR T0547 348 :KLI 1hkvA 332 :YVS T0547 353 :K 1hkvA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1hkvA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 1hkvA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHA T0547 439 :RYLVNFSLFQSMPDFWGLEQ 1hkvA 427 :GNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 27 number of extra gaps= 5 total=4419 Will force an alignment to be made, even if fragment is small Number of alignments=175 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 1 :MMD 1hkvA 2 :NEL T0547 4 :YGIDIWGNENF 1hkvA 7 :LAPNVWPRNTT T0547 18 :NGKVCI 1hkvA 21 :VGVVCI T0547 27 :KKPAIIDIVKE 1hkvA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 1hkvA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 1hkvA 62 :G T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 64 :GANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 1hkvA 118 :KSVSELTAAV T0547 148 :EMGH 1hkvA 128 :KAGV T0547 154 :T 1hkvA 134 :I T0547 156 :TIEGLNELEAIIDIAKE 1hkvA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1hkvA 152 :AGIVQDVLVRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTST 1hkvA 179 :EDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLEQFT 1hkvA 191 :AAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 1hkvA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGA 1hkvA 241 :EFGP T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEYSQFKNEK 1hkvA 261 :ISYLPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 1hkvA 329 :HRR T0547 348 :KLI 1hkvA 332 :YVS T0547 353 :K 1hkvA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1hkvA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 1hkvA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVH T0547 438 :ERYLVNFSLFQSMPDFWGLEQ 1hkvA 426 :AGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 29 number of extra gaps= 5 total=4448 Will force an alignment to be made, even if fragment is small Number of alignments=176 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 1 :MMDYGI 1hkvA 2 :NELLHL T0547 7 :DIWGNENF 1hkvA 10 :NVWPRNTT T0547 18 :NGKVCI 1hkvA 21 :VGVVCI T0547 27 :KKPAIIDIVKE 1hkvA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 38 :YGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 1hkvA 118 :KSVSELTAAV T0547 148 :EMGH 1hkvA 128 :KAGV T0547 154 :T 1hkvA 134 :I T0547 156 :TIEGLNELEAIIDIAKE 1hkvA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1hkvA 152 :AGIVQDVLVRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTS 1hkvA 179 :EDQKFGLSV T0547 209 :TELIEAVNLLKENKLLEQFT 1hkvA 190 :GAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 1hkvA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 1hkvA 241 :EFGPE T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEYSQFKNEK 1hkvA 261 :ISYLPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 1hkvA 329 :HRR T0547 348 :KLI 1hkvA 332 :YVS T0547 353 :K 1hkvA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1hkvA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGY 1hkvA 366 :VPARLVGKHCESGDIIVRDT T0547 398 :DLQ 1hkvA 386 :WVP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHA T0547 439 :RYLVNFSLFQSMPDFWGLEQ 1hkvA 427 :GNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 28 number of extra gaps= 5 total=4476 Will force an alignment to be made, even if fragment is small Number of alignments=177 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 1 :MMDYG 1hkvA 2 :NELLH T0547 6 :IDIWGNENF 1hkvA 9 :PNVWPRNTT T0547 18 :NGKVCI 1hkvA 21 :VGVVCI T0547 27 :KKPAIIDIVKE 1hkvA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 1hkvA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 1hkvA 62 :G T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 64 :GANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 1hkvA 118 :KSVSELTAAV T0547 148 :EMGH 1hkvA 128 :KAGV T0547 154 :T 1hkvA 134 :I T0547 156 :TIEGLNELEAIIDIAKE 1hkvA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1hkvA 152 :AGIVQDVLVRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTST 1hkvA 179 :EDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLEQFT 1hkvA 191 :AAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 1hkvA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 1hkvA 241 :EFGPE T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEYSQFKNEK 1hkvA 261 :ISYLPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 1hkvA 329 :HRR T0547 348 :KLI 1hkvA 332 :YVS T0547 353 :K 1hkvA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1hkvA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 1hkvA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHA T0547 439 :RYLVNFSLFQSMPDFWGLEQ 1hkvA 427 :GNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 29 number of extra gaps= 5 total=4505 Will force an alignment to be made, even if fragment is small Number of alignments=178 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 1 :MMDYGID 1hkvA 2 :NELLHLA T0547 8 :IWGNENF 1hkvA 11 :VWPRNTT T0547 18 :NGKVCI 1hkvA 21 :VGVVCI T0547 27 :KKPAIIDIVKE 1hkvA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 38 :YGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 1hkvA 118 :KSVSELTAAV T0547 148 :EMGH 1hkvA 128 :KAGV T0547 154 :T 1hkvA 134 :I T0547 156 :TIEGLNELEAIIDIAKE 1hkvA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1hkvA 152 :AGIVQDVLVRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTS 1hkvA 179 :EDQKFGLSV T0547 209 :TELIEAVNLLKENKLLEQFT 1hkvA 190 :GAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 1hkvA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMG 1hkvA 241 :EFG T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEYSQFKNEK 1hkvA 261 :ISYLPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 1hkvA 329 :HRR T0547 348 :KLI 1hkvA 332 :YVS T0547 353 :K 1hkvA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1hkvA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGY 1hkvA 366 :VPARLVGKHCESGDIIVRDT T0547 398 :DLQ 1hkvA 386 :WVP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVH T0547 438 :ERYLVNFSLFQSMPDFWGLEQ 1hkvA 426 :AGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 28 number of extra gaps= 5 total=4533 Will force an alignment to be made, even if fragment is small Number of alignments=179 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 1 :MMDYGID 1hkvA 2 :NELLHLA T0547 8 :IWGNENF 1hkvA 11 :VWPRNTT T0547 18 :NGKVCI 1hkvA 21 :VGVVCI T0547 27 :KKPAIIDIVKE 1hkvA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 1hkvA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 1hkvA 62 :G T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 64 :GANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 1hkvA 118 :KSVSELTAAV T0547 148 :EMGH 1hkvA 128 :KAGV T0547 154 :T 1hkvA 134 :I T0547 156 :TIEGLNELEAIIDIAKE 1hkvA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1hkvA 152 :AGIVQDVLVRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTST 1hkvA 179 :EDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLEQFT 1hkvA 191 :AAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 1hkvA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMG 1hkvA 241 :EFG T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEYSQFKNEK 1hkvA 261 :ISYLPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 1hkvA 329 :HRR T0547 348 :KLI 1hkvA 332 :YVS T0547 353 :K 1hkvA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1hkvA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 1hkvA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHA T0547 439 :RYLVNFSLFQSMPDFWGLEQ 1hkvA 427 :GNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 29 number of extra gaps= 5 total=4562 Will force an alignment to be made, even if fragment is small Number of alignments=180 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 6 :IDIWGNENF 1hkvA 9 :PNVWPRNTT T0547 18 :NGKVCI 1hkvA 21 :VGVVCI T0547 27 :KKPAIIDIVKE 1hkvA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 38 :YGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 1hkvA 118 :KSVSELTAAV T0547 148 :EMGH 1hkvA 128 :KAGV T0547 154 :T 1hkvA 134 :I T0547 156 :TIEGLNELEAIIDIAKE 1hkvA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1hkvA 152 :AGIVQDVLVRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTS 1hkvA 179 :EDQKFGLSV T0547 209 :TELIEAVNLLKENKLLEQFT 1hkvA 190 :GAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 1hkvA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 1hkvA 241 :EFGPE T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEYSQFKNEK 1hkvA 261 :ISYLPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 1hkvA 329 :HRR T0547 348 :KLI 1hkvA 332 :YVS T0547 353 :K 1hkvA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1hkvA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 1hkvA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHA T0547 439 :RYLVNFSLFQSMPDFWGLEQ 1hkvA 427 :GNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 27 number of extra gaps= 5 total=4589 Will force an alignment to be made, even if fragment is small Number of alignments=181 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 5 :GIDIWGNENF 1hkvA 8 :APNVWPRNTT T0547 18 :NGKVCI 1hkvA 21 :VGVVCI T0547 27 :KKPAIIDIVKE 1hkvA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 1hkvA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 1hkvA 62 :G T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 64 :GANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 1hkvA 118 :KSVSELTAAV T0547 148 :EMGH 1hkvA 128 :KAGV T0547 154 :T 1hkvA 134 :I T0547 156 :TIEGLNELEAIIDIAKE 1hkvA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1hkvA 152 :AGIVQDVLVRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTST 1hkvA 179 :EDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLEQFT 1hkvA 191 :AAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 1hkvA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGA 1hkvA 241 :EFGP T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEYSQFKNEK 1hkvA 261 :ISYLPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 1hkvA 329 :HRR T0547 348 :KLI 1hkvA 332 :YVS T0547 353 :K 1hkvA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1hkvA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 1hkvA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVH T0547 438 :ERYLVNFSLFQSMPDFWGLEQ 1hkvA 426 :AGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 28 number of extra gaps= 5 total=4617 Will force an alignment to be made, even if fragment is small Number of alignments=182 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 7 :DIWGNENF 1hkvA 10 :NVWPRNTT T0547 18 :NGKVCI 1hkvA 21 :VGVVCI T0547 27 :KKPAIIDIVKE 1hkvA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 38 :YGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 1hkvA 118 :KSVSELTAAV T0547 148 :EMGH 1hkvA 128 :KAGV T0547 154 :T 1hkvA 134 :I T0547 156 :TIEGLNELEAIIDIAKE 1hkvA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1hkvA 152 :AGIVQDVLVRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTS 1hkvA 179 :EDQKFGLSV T0547 209 :TELIEAVNLLKENKLLEQFT 1hkvA 190 :GAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 1hkvA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 1hkvA 241 :EFGPE T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEYSQFKNEK 1hkvA 261 :ISYLPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 1hkvA 329 :HRR T0547 348 :KLI 1hkvA 332 :YVS T0547 353 :K 1hkvA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1hkvA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGY 1hkvA 366 :VPARLVGKHCESGDIIVRDT T0547 398 :DLQ 1hkvA 386 :WVP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHA T0547 439 :RYLVNFSLFQSMPDFWGLEQ 1hkvA 427 :GNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 27 number of extra gaps= 5 total=4644 Will force an alignment to be made, even if fragment is small Number of alignments=183 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 7 :DIWGNENF 1hkvA 10 :NVWPRNTT T0547 18 :NGKVCI 1hkvA 21 :VGVVCI T0547 27 :KKPAIIDIVKE 1hkvA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 1hkvA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 1hkvA 62 :G T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 64 :GANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 1hkvA 118 :KSVSELTAAV T0547 148 :EMGH 1hkvA 128 :KAGV T0547 154 :T 1hkvA 134 :I T0547 156 :TIEGLNELEAIIDIAKE 1hkvA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1hkvA 152 :AGIVQDVLVRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTST 1hkvA 179 :EDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLEQFT 1hkvA 191 :AAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 1hkvA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 1hkvA 241 :EFGPE T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEYSQFKNEK 1hkvA 261 :ISYLPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 1hkvA 329 :HRR T0547 348 :KLI 1hkvA 332 :YVS T0547 353 :K 1hkvA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1hkvA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 1hkvA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHA T0547 439 :RYLVNFSLFQSMPDFWGLEQ 1hkvA 427 :GNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 28 number of extra gaps= 5 total=4672 Will force an alignment to be made, even if fragment is small Number of alignments=184 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 7 :DIWGNENF 1hkvA 10 :NVWPRNTT T0547 18 :NGKVCI 1hkvA 21 :VGVVCI T0547 27 :KKPAIIDIVKE 1hkvA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 38 :YGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 1hkvA 118 :KSVSELTAAV T0547 148 :EMGH 1hkvA 128 :KAGV T0547 154 :T 1hkvA 134 :I T0547 156 :TIEGLNELEAIIDIAKE 1hkvA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1hkvA 152 :AGIVQDVLVRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTS 1hkvA 179 :EDQKFGLSV T0547 209 :TELIEAVNLLKENKLLEQFT 1hkvA 190 :GAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 1hkvA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMG 1hkvA 241 :EFG T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEYSQFKNEK 1hkvA 261 :ISYLPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 1hkvA 329 :HRR T0547 348 :KLI 1hkvA 332 :YVS T0547 353 :K 1hkvA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1hkvA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGY 1hkvA 366 :VPARLVGKHCESGDIIVRDT T0547 398 :DLQ 1hkvA 386 :WVP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVH T0547 438 :ERYLVNFSLFQSMPDFWGLE 1hkvA 426 :AGNARLVLRRETVDDLLSLE Number of specific fragments extracted= 27 number of extra gaps= 5 total=4699 Will force an alignment to be made, even if fragment is small Number of alignments=185 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 7 :DIWGNENF 1hkvA 10 :NVWPRNTT T0547 18 :NGKVCI 1hkvA 21 :VGVVCI T0547 27 :KKPAIIDIVKE 1hkvA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 1hkvA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 1hkvA 62 :G T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 64 :GANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 1hkvA 118 :KSVSELTAAV T0547 148 :EMGH 1hkvA 128 :KAGV T0547 154 :T 1hkvA 134 :I T0547 156 :TIEGLNELEAIIDIAKE 1hkvA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1hkvA 152 :AGIVQDVLVRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTST 1hkvA 179 :EDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLEQFT 1hkvA 191 :AAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 1hkvA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMG 1hkvA 241 :EFG T0547 265 :NLKAINLGGG 1hkvA 249 :QIATVDLGGG T0547 277 :VEYSQFKNEK 1hkvA 261 :ISYLPSDDPP T0547 291 :TLREYANDVVFILKNIA 1hkvA 271 :PIAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 1hkvA 329 :HRR T0547 348 :KLI 1hkvA 332 :YVS T0547 353 :K 1hkvA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1hkvA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 1hkvA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 1hkvA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 1hkvA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHA T0547 439 :RYLVNFSLFQSMPDFWGLEQ 1hkvA 427 :GNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 28 number of extra gaps= 5 total=4727 Will force an alignment to be made, even if fragment is small Number of alignments=186 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)D7 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 8 :IWGNENFIIKNGKVC 1hkvA 3 :ELLHLAPNVWPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFGS T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 64 :GANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1hkvA 152 :AGIVQDVLVRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 1hkvA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 1hkvA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKN 1hkvA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPE T0547 266 :LKAINLGGG 1hkvA 250 :IATVDLGGG T0547 277 :VEYSQFKNEKSR 1hkvA 261 :ISYLPSDDPPPI T0547 293 :REYANDVVFILKNIA 1hkvA 273 :AELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 1hkvA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 1hkvA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1hkvA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1hkvA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 5 total=4744 Will force an alignment to be made, even if fragment is small Number of alignments=187 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)D7 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 8 :IWGNENFIIKNGKVC 1hkvA 3 :ELLHLAPNVWPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 62 :GSGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1hkvA 152 :AGIVQDVLVRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTST 1hkvA 173 :FISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENK 1hkvA 191 :AAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 1hkvA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGG 1hkvA 247 :TAQIATVDLGGG T0547 277 :VEYSQFKNEKSR 1hkvA 261 :ISYLPSDDPPPI T0547 293 :REYANDVVFILKNIA 1hkvA 273 :AELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 1hkvA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 1hkvA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1hkvA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1hkvA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 5 total=4761 Will force an alignment to be made, even if fragment is small Number of alignments=188 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)D7 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 8 :IWGNENFIIKNGKVC 1hkvA 3 :ELLHLAPNVWPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFGS T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 64 :GANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1hkvA 152 :AGIVQDVLVRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 1hkvA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 1hkvA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 1hkvA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGG 1hkvA 247 :TAQIATVDLGGG T0547 277 :VEYSQFKNEKS 1hkvA 261 :ISYLPSDDPPP T0547 292 :LREYANDVVFILKNIA 1hkvA 272 :IAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 1hkvA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 1hkvA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1hkvA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1hkvA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 5 total=4778 Will force an alignment to be made, even if fragment is small Number of alignments=189 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)D7 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 8 :IWGNENFIIKNGKVC 1hkvA 3 :ELLHLAPNVWPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1hkvA 152 :AGIVQDVLVRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTST 1hkvA 173 :FISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENK 1hkvA 191 :AAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 1hkvA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGG 1hkvA 247 :TAQIATVDLGGG T0547 277 :VEYSQFKNEKSR 1hkvA 261 :ISYLPSDDPPPI T0547 293 :REYANDVVFILKNIA 1hkvA 273 :AELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 1hkvA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 1hkvA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1hkvA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1hkvA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 5 total=4795 Will force an alignment to be made, even if fragment is small Number of alignments=190 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)D7 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)N18 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 8 :IWGNEN 1hkvA 3 :ELLHLA T0547 14 :FI 1hkvA 16 :TT T0547 19 :GKVCIN 1hkvA 21 :VGVVCI T0547 27 :KKPAIIDIVKEL 1hkvA 27 :AGIPLTQLAQEY T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1hkvA 39 :GTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 62 :GSGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1hkvA 152 :AGIVQDVLVRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 1hkvA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 1hkvA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 1hkvA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGG 1hkvA 247 :TAQIATVDLGGG T0547 277 :VEYSQFKNEKS 1hkvA 261 :ISYLPSDDPPP T0547 292 :LREYANDVVFILKNIA 1hkvA 272 :IAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 1hkvA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 1hkvA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1hkvA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1hkvA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 20 number of extra gaps= 5 total=4815 Will force an alignment to be made, even if fragment is small Number of alignments=191 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)D7 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 8 :IWGNENFIIKNGKVC 1hkvA 3 :ELLHLAPNVWPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 62 :GSGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1hkvA 152 :AGIVQDVLVRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 1hkvA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 1hkvA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1hkvA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGE T0547 262 :GAKNLKAINLGGG 1hkvA 246 :KTAQIATVDLGGG T0547 277 :VEYSQFKNEKSR 1hkvA 261 :ISYLPSDDPPPI T0547 293 :REYANDVVFILKNIA 1hkvA 273 :AELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 1hkvA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 1hkvA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1hkvA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1hkvA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 5 total=4832 Will force an alignment to be made, even if fragment is small Number of alignments=192 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 16 :IKNGKVC 1hkvA 11 :VWPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFGS T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 64 :GANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1hkvA 152 :AGIVQDVLVRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 1hkvA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 1hkvA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKN 1hkvA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPE T0547 266 :LKAINLGGG 1hkvA 250 :IATVDLGGG T0547 277 :VEYSQFKNEKSR 1hkvA 261 :ISYLPSDDPPPI T0547 293 :REYANDVVFILKNIA 1hkvA 273 :AELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 1hkvA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 1hkvA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1hkvA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1hkvA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 5 total=4849 Will force an alignment to be made, even if fragment is small Number of alignments=193 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)D7 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 8 :IWGNENFIIKNGKVC 1hkvA 3 :ELLHLAPNVWPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 62 :GSGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1hkvA 152 :AGIVQDVLVRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTST 1hkvA 173 :FISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENK 1hkvA 191 :AAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 1hkvA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGG 1hkvA 247 :TAQIATVDLGGG T0547 277 :VEYSQFKNEKSR 1hkvA 261 :ISYLPSDDPPPI T0547 293 :REYANDVVFILKNIA 1hkvA 273 :AELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 1hkvA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 1hkvA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1hkvA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1hkvA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 5 total=4866 Will force an alignment to be made, even if fragment is small Number of alignments=194 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)D7 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 8 :IWGNENFIIKNGKVC 1hkvA 3 :ELLHLAPNVWPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFGS T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 64 :GANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1hkvA 152 :AGIVQDVLVRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 1hkvA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 1hkvA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 1hkvA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGG 1hkvA 247 :TAQIATVDLGGG T0547 277 :VEYSQFKNEKS 1hkvA 261 :ISYLPSDDPPP T0547 292 :LREYANDVVFILKNIA 1hkvA 272 :IAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 1hkvA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 1hkvA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1hkvA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1hkvA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 5 total=4883 Will force an alignment to be made, even if fragment is small Number of alignments=195 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)D7 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 8 :IWGNENFIIKNGKVC 1hkvA 3 :ELLHLAPNVWPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 63 :SGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1hkvA 152 :AGIVQDVLVRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTST 1hkvA 173 :FISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENK 1hkvA 191 :AAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 1hkvA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGG 1hkvA 247 :TAQIATVDLGGG T0547 277 :VEYSQFKNEKSR 1hkvA 261 :ISYLPSDDPPPI T0547 293 :REYANDVVFILKNIA 1hkvA 273 :AELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 1hkvA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 1hkvA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1hkvA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1hkvA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 5 total=4900 Will force an alignment to be made, even if fragment is small Number of alignments=196 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)N18 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 T0547 14 :FI 1hkvA 16 :TT T0547 19 :GKVCIN 1hkvA 21 :VGVVCI T0547 27 :KKPAIIDIV 1hkvA 27 :AGIPLTQLA T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNF 1hkvA 36 :QEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 62 :GSGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1hkvA 152 :AGIVQDVLVRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 1hkvA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 1hkvA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 1hkvA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGG 1hkvA 247 :TAQIATVDLGGG T0547 277 :VEYSQFKNEKS 1hkvA 261 :ISYLPSDDPPP T0547 292 :LREYANDVVFILKNIA 1hkvA 272 :IAELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 1hkvA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 1hkvA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1hkvA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWG 1hkvA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLS Number of specific fragments extracted= 19 number of extra gaps= 5 total=4919 Will force an alignment to be made, even if fragment is small Number of alignments=197 # 1hkvA read from all-align.a2m # found chain 1hkvA in template set Warning: unaligning (T0547)D7 because first residue in template chain is (1hkvA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)E20 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE in next template residue (1hkvA)H133 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1hkvA)H133 Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1hkvA)G260 Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1hkvA)G260 Warning: unaligning (T0547)E308 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)A289 Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)A289 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hkvA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hkvA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (1hkvA)R447 T0547 8 :IWGNENFIIKNGKVC 1hkvA 3 :ELLHLAPNVWPRNTT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 1hkvA 21 :VGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 1hkvA 62 :GSGANVHYAAKAFLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1hkvA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGV T0547 155 :LTIEGLNELEAIIDIAKE 1hkvA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1hkvA 152 :AGIVQDVLVRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 1hkvA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 1hkvA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1hkvA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGE T0547 262 :GAKNLKAINLGGG 1hkvA 246 :KTAQIATVDLGGG T0547 277 :VEYSQFKNEKSR 1hkvA 261 :ISYLPSDDPPPI T0547 293 :REYANDVVFILKNIA 1hkvA 273 :AELAAKLGTIVSDES T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1hkvA 290 :VGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 1hkvA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 1hkvA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1hkvA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1hkvA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 5 total=4936 Will force an alignment to be made, even if fragment is small Number of alignments=198 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)N13 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)I567 because last residue in template chain is (1knwA)H422 T0547 14 :FIIKNGKVCINYEKKPAIID 1knwA 3 :HSLFSTDTDLTAENLLRLPA T0547 42 :GYKGPLLLRFPHLIQKQIENIYG 1knwA 23 :EFGCPVWVYDAQIIRRQIAALKQ T0547 66 :FNK 1knwA 46 :FDV T0547 81 :AVYPLKVNQYPGFVKNLVKLG 1knwA 49 :VRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNE 1knwA 70 :VKVDSVSLGEIERALAAGYN T0547 126 :GAPITV 1knwA 94 :PDDIVF T0547 132 :NGFKDRELINIGF 1knwA 101 :ADVIDQATLERVS T0547 150 :GHNITLTIEGLNELEAIIDIAK 1knwA 114 :ELQIPVNAGSVDMLDQLGQVSP T0547 177 :KPNIGLRVRLH 1knwA 136 :GHRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 224 :LE 1knwA 183 :LQ T0547 227 :FTMIHFHLGSQI 1knwA 185 :LVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 263 :AKNLKAINLGGGLAVEY 1knwA 216 :GQDLQAISAGGGLSVPY T0547 287 :SRNYTLREYANDVVFILKNIAEQ 1knwA 236 :EEAVDTEHYYGLWNAAREQIARH T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 259 :LGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 439 :RYLVNFSLFQSMPDFW 1knwA 295 :FVLVDAGFNDLMRPAM T0547 456 :LEQNFPIMPL 1knwA 311 :YGSYHHISAL T0547 466 :DRLDEEPTRSASIWDITCDSDGEISYSKDK 1knwA 325 :RSLEHAPTVETVVAGPLCESGDVFTQQEGG T0547 496 :PLFLHDVDV 1knwA 358 :TRALPEVKA T0547 508 :NYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1knwA 367 :GDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD T0547 544 :GYEVEGIIEAQSILDTLEDLDYD 1knwA 399 :NGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 22 number of extra gaps= 0 total=4958 Will force an alignment to be made, even if fragment is small Number of alignments=199 # 1knwA read from all-align.a2m # found chain 1knwA in template set T0547 23 :INYEKKPAIIDIVKELR 1knwA 6 :FSTDTDLTAENLLRLPA T0547 42 :GYKGPLLLRFPHLIQKQIENIYG 1knwA 23 :EFGCPVWVYDAQIIRRQIAALKQ T0547 66 :FNK 1knwA 46 :FDV T0547 81 :AVYPLKVNQYPGFVKNLVKLG 1knwA 49 :VRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNE 1knwA 70 :VKVDSVSLGEIERALAAGYN T0547 126 :GAPITV 1knwA 94 :PDDIVF T0547 132 :NGFKDRELINIGF 1knwA 101 :ADVIDQATLERVS T0547 150 :GHNITLTIEGLNELEAIIDIAK 1knwA 114 :ELQIPVNAGSVDMLDQLGQVSP T0547 177 :KPNIGLRVRLH 1knwA 136 :GHRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 224 :LE 1knwA 183 :LQ T0547 227 :FTMIHFHLGSQI 1knwA 185 :LVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 263 :AKNLKAINLGGGLAVEY 1knwA 216 :GQDLQAISAGGGLSVPY T0547 287 :SRNYTLREYANDVVFILKNIAEQ 1knwA 236 :EEAVDTEHYYGLWNAAREQIARH T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 259 :LGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 439 :RYLVNFSLFQSMPDFW 1knwA 295 :FVLVDAGFNDLMRPAM T0547 456 :LEQNFPIMPL 1knwA 311 :YGSYHHISAL T0547 466 :DRLDEEPTRSASIWDITCDSDGEISYSKDK 1knwA 325 :RSLEHAPTVETVVAGPLCESGDVFTQQEGG T0547 496 :PLFLHDVDV 1knwA 358 :TRALPEVKA T0547 508 :NYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1knwA 367 :GDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD T0547 544 :GYEVEGIIEAQSILDTLEDLDY 1knwA 399 :NGQARLIRRRQTIEELLALELL Number of specific fragments extracted= 22 number of extra gaps= 0 total=4980 Will force an alignment to be made, even if fragment is small Number of alignments=200 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)G19 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)I567 because last residue in template chain is (1knwA)H422 T0547 20 :KVCINYEKKPAIIDIVKELR 1knwA 3 :HSLFSTDTDLTAENLLRLPA T0547 42 :GYKGPLLLRFPHLIQKQIENI 1knwA 23 :EFGCPVWVYDAQIIRRQIAAL T0547 64 :GNFN 1knwA 44 :KQFD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APIT 1knwA 95 :DDIV T0547 131 :VNGFKDRELINIGF 1knwA 100 :TADVIDQATLERVS T0547 150 :GHNITLTIEGLNELEAIIDIAKERF 1knwA 114 :ELQIPVNAGSVDMLDQLGQVSPGHR T0547 180 :IGLRVRLH 1knwA 139 :VWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 224 :LE 1knwA 183 :LQ T0547 227 :FTMIHFHLGSQI 1knwA 185 :LVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 263 :AKNLKAINLGGGLAVEY 1knwA 216 :GQDLQAISAGGGLSVPY T0547 284 :NEKSRNYTLREYANDVVFILKNIAEQKKDL 1knwA 233 :QQGEEAVDTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQE 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMG T0547 436 :VQERYLVNFSLFQSMPDFW 1knwA 292 :SRHFVLVDAGFNDLMRPAM T0547 456 :LEQNFPIMPLDRL 1knwA 311 :YGSYHHISALAAD T0547 469 :DEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1knwA 328 :EHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD T0547 542 :EKGYEV 1knwA 399 :NGQARL T0547 550 :IIEAQSILDTLEDLDYD 1knwA 405 :IRRRQTIEELLALELLH Number of specific fragments extracted= 21 number of extra gaps= 0 total=5001 Will force an alignment to be made, even if fragment is small Number of alignments=201 # 1knwA read from all-align.a2m # found chain 1knwA in template set T0547 22 :CINYEKKPAIIDIVKELR 1knwA 5 :LFSTDTDLTAENLLRLPA T0547 42 :GYKGPLLLRFPHLIQKQIENI 1knwA 23 :EFGCPVWVYDAQIIRRQIAAL T0547 64 :GNFN 1knwA 44 :KQFD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APIT 1knwA 95 :DDIV T0547 131 :VNGFKDRELINIGF 1knwA 100 :TADVIDQATLERVS T0547 150 :GHNITLTIEGLNELEAIIDIAKERF 1knwA 114 :ELQIPVNAGSVDMLDQLGQVSPGHR T0547 180 :IGLRVRLH 1knwA 139 :VWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 224 :LE 1knwA 183 :LQ T0547 227 :FTMIHFHLGSQI 1knwA 185 :LVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 263 :AKNLKAINLGGGLAVEY 1knwA 216 :GQDLQAISAGGGLSVPY T0547 284 :NEKSRNYTLREYANDVVFILKNIAEQKKDL 1knwA 233 :QQGEEAVDTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQE 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMG T0547 436 :VQERYLVNFSLFQSMPDFW 1knwA 292 :SRHFVLVDAGFNDLMRPAM T0547 456 :LEQNFPIMPLDRL 1knwA 311 :YGSYHHISALAAD T0547 469 :DEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1knwA 328 :EHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD T0547 542 :EKGYEV 1knwA 399 :NGQARL T0547 550 :IIEAQSILDTLEDLD 1knwA 405 :IRRRQTIEELLALEL Number of specific fragments extracted= 21 number of extra gaps= 0 total=5022 Will force an alignment to be made, even if fragment is small Number of alignments=202 # 1knwA read from all-align.a2m # found chain 1knwA in template set T0547 1 :M 1knwA 2 :P T0547 14 :FIIKNGKVCINYEKKPAII 1knwA 3 :HSLFSTDTDLTAENLLRLP T0547 43 :YKGPLLLRFPHLIQKQIENIYG 1knwA 24 :FGCPVWVYDAQIIRRQIAALKQ T0547 66 :FN 1knwA 46 :FD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APITVNGFKDRELINIGF 1knwA 96 :DIVFTADVIDQATLERVS T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1knwA 114 :ELQIPVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLH 1knwA 137 :HRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKE 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQR T0547 223 :LLEQFTMIHFHLGSQI 1knwA 181 :HHLQLVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 263 :AKNLKAINLGGGLAVEYSQF 1knwA 216 :GQDLQAISAGGGLSVPYQQG T0547 287 :SRNYTLREYANDVVFILKNIAEQKKDL 1knwA 236 :EEAVDTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQE 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMG T0547 436 :VQERYLVNFSLFQSMPDFW 1knwA 292 :SRHFVLVDAGFNDLMRPAM T0547 456 :LEQNFPIMPL 1knwA 311 :YGSYHHISAL T0547 466 :DRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1knwA 325 :RSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD T0547 544 :GYEVEGIIEAQSILDTLEDLD 1knwA 399 :NGQARLIRRRQTIEELLALEL Number of specific fragments extracted= 19 number of extra gaps= 0 total=5041 Will force an alignment to be made, even if fragment is small Number of alignments=203 # 1knwA read from all-align.a2m # found chain 1knwA in template set T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYG 1knwA 21 :PAEFGCPVWVYDAQIIRRQIAALKQ T0547 66 :FN 1knwA 46 :FD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APITVNGFKDRELINIGF 1knwA 96 :DIVFTADVIDQATLERVS T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1knwA 114 :ELQIPVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLH 1knwA 137 :HRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKE 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQR T0547 223 :LLEQFTMIHFHLGSQI 1knwA 181 :HHLQLVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 263 :AKNLKAINLGGGLAVEYSQF 1knwA 216 :GQDLQAISAGGGLSVPYQQG T0547 287 :SRNYTLREYANDVVFILKNIAEQKKDL 1knwA 236 :EEAVDTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQE 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMG T0547 436 :VQERYLVNFSLFQSMPDFW 1knwA 292 :SRHFVLVDAGFNDLMRPAM T0547 456 :LEQNFPIMPL 1knwA 311 :YGSYHHISAL T0547 466 :DRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1knwA 325 :RSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD T0547 544 :GYEVEGIIEAQSILDTLE 1knwA 399 :NGQARLIRRRQTIEELLA Number of specific fragments extracted= 17 number of extra gaps= 0 total=5058 Will force an alignment to be made, even if fragment is small Number of alignments=204 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)Q458 because last residue in template chain is (1knwA)H422 T0547 20 :KVCINYEKK 1knwA 3 :HSLFSTDTD T0547 31 :IIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYG 1knwA 12 :LTAENLLRLPAEFGCPVWVYDAQIIRRQIAALKQ T0547 66 :FN 1knwA 46 :FD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APITVNGFKDRE 1knwA 95 :DDIVFTADVIDQ T0547 140 :INIGF 1knwA 107 :ATLER T0547 146 :AAEMGHN 1knwA 112 :VSELQIP T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLH 1knwA 137 :HRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKL 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHL T0547 226 :QFTMIHFHLGSQI 1knwA 184 :QLVGIHMHIGSGV T0547 243 :PLKKALNEAGNIYTELRKMGA 1knwA 197 :DYAHLEQVCGAMVRQVIEFGQ T0547 265 :NLKAINLGGGLAVEY 1knwA 218 :DLQAISAGGGLSVPY T0547 282 :FKNEKSR 1knwA 233 :QQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKDL 1knwA 240 :DTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGS T0547 346 :ENKLILKKQNPKLIDE 1knwA 293 :RHFVLVDAGFNDLMRP T0547 362 :LYDLYKSIKPSNALE 1knwA 310 :MYGSYHHISALAADG T0547 377 :YLHDSIDHLESILTLFDLGYVD 1knwA 330 :APTVETVVAGPLCESGDVFTQQ T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLE 1knwA 393 :PEVLFDNGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 22 number of extra gaps= 0 total=5080 Will force an alignment to be made, even if fragment is small Number of alignments=205 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)Q458 because last residue in template chain is (1knwA)H422 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIY 1knwA 3 :HSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALK T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 1knwA 45 :QFDVVRFAQKACSNIHILRLMREQGV T0547 107 :GLEAGSKAELLLAMAYNNEG 1knwA 71 :KVDSVSLGEIERALAAGYNP T0547 127 :APITVNGFKDRE 1knwA 95 :DDIVFTADVIDQ T0547 140 :INIGF 1knwA 107 :ATLER T0547 146 :AAEMGH 1knwA 112 :VSELQI T0547 153 :I 1knwA 118 :P T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLH 1knwA 137 :HRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKL 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHL T0547 226 :QFTMIHFHLGSQ 1knwA 184 :QLVGIHMHIGSG T0547 239 :TEIHPLKKALNEAGNIYT 1knwA 196 :VDYAHLEQVCGAMVRQVI T0547 260 :KMGA 1knwA 214 :EFGQ T0547 265 :NLKAINLGGGLAVEY 1knwA 218 :DLQAISAGGGLSVPY T0547 282 :FKNEKSR 1knwA 233 :QQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKDL 1knwA 240 :DTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGS T0547 346 :ENKLILKKQNPKLIDE 1knwA 293 :RHFVLVDAGFNDLMRP T0547 362 :LYDLYKSIKPS 1knwA 310 :MYGSYHHISAL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 1knwA 326 :SLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLE 1knwA 393 :PEVLFDNGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 22 number of extra gaps= 0 total=5102 Will force an alignment to be made, even if fragment is small Number of alignments=206 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)Q458 because last residue in template chain is (1knwA)H422 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENI 1knwA 3 :HSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAAL T0547 64 :GNFN 1knwA 44 :KQFD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNE 1knwA 70 :VKVDSVSLGEIERALAAGYN T0547 126 :GAPITVNGFKDRE 1knwA 94 :PDDIVFTADVIDQ T0547 140 :INIGF 1knwA 107 :ATLER T0547 146 :AAEMG 1knwA 112 :VSELQ T0547 153 :ITLTIEGLNELEAIIDIAKE 1knwA 117 :IPVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLH 1knwA 137 :HRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKL 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHL T0547 226 :QFTMIHFHLGSQ 1knwA 184 :QLVGIHMHIGSG T0547 239 :TEIHPLKKALNEAGNIYTEL 1knwA 196 :VDYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEY 1knwA 218 :DLQAISAGGGLSVPY T0547 282 :FKNEKSR 1knwA 233 :QQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKDL 1knwA 240 :DTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGS T0547 346 :ENKLILKKQNPKLIDE 1knwA 293 :RHFVLVDAGFNDLMRP T0547 362 :LYDLYKSI 1knwA 310 :MYGSYHHI T0547 370 :KPSNALEYLHDSIDHLESILTLFDLGYVD 1knwA 323 :DGRSLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLE 1knwA 393 :PEVLFDNGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 22 number of extra gaps= 0 total=5124 Will force an alignment to be made, even if fragment is small Number of alignments=207 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)Q458 because last residue in template chain is (1knwA)H422 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIY 1knwA 3 :HSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALK T0547 65 :NF 1knwA 45 :QF T0547 77 :GG 1knwA 47 :DV T0547 81 :AVYPLKVNQYPGFVKNLVKLGK 1knwA 49 :VRFAQKACSNIHILRLMREQGV T0547 107 :GLEAGSKAELLLAMAYNNE 1knwA 71 :KVDSVSLGEIERALAAGYN T0547 126 :GAPITVNGFKDRE 1knwA 94 :PDDIVFTADVIDQ T0547 140 :INIGF 1knwA 107 :ATLER T0547 146 :AAEMGH 1knwA 112 :VSELQI T0547 153 :I 1knwA 118 :P T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLH 1knwA 137 :HRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKL 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHL T0547 226 :QFTMIHFHLGSQI 1knwA 184 :QLVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNI 1knwA 197 :DYAHLEQVCGAMVRQ T0547 258 :LRKMGA 1knwA 212 :VIEFGQ T0547 265 :NLKAINLGGGLAVEY 1knwA 218 :DLQAISAGGGLSVPY T0547 282 :FKNEKSR 1knwA 233 :QQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKDL 1knwA 240 :DTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGS T0547 346 :ENKLILKKQNPKLIDE 1knwA 293 :RHFVLVDAGFNDLMRP T0547 362 :LYDLYKSIKPSNALE 1knwA 310 :MYGSYHHISALAADG T0547 377 :YLHDSIDHLESILTLFDLG 1knwA 330 :APTVETVVAGPLCESGDVF T0547 396 :YVD 1knwA 351 :QEG T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLE 1knwA 393 :PEVLFDNGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 25 number of extra gaps= 0 total=5149 Will force an alignment to be made, even if fragment is small Number of alignments=208 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)D586 because last residue in template chain is (1knwA)H422 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIEN 1knwA 3 :HSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAA T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLG 1knwA 43 :LKQFDVVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNE 1knwA 70 :VKVDSVSLGEIERALAAGYN T0547 126 :GAPITVNGFKDRE 1knwA 94 :PDDIVFTADVIDQ T0547 140 :INIGF 1knwA 107 :ATLER T0547 146 :AAEMGHN 1knwA 112 :VSELQIP T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLH 1knwA 137 :HRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKL 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHL T0547 226 :QFTMIHFHLGSQ 1knwA 184 :QLVGIHMHIGSG T0547 239 :TEIHPLKKALNEAGNIYTEL 1knwA 196 :VDYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEY 1knwA 218 :DLQAISAGGGLSVPY T0547 282 :FKNEKSR 1knwA 233 :QQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKDL 1knwA 240 :DTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGS T0547 346 :ENKLILKKQNPKLIDE 1knwA 293 :RHFVLVDAGFNDLMRP T0547 362 :LYDLYKSIK 1knwA 310 :MYGSYHHIS T0547 371 :PSNALEYLHDSIDHLESILTLFDLGYVD 1knwA 324 :GRSLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRP T0547 429 :LL 1knwA 392 :LP T0547 537 :IISINEKGYEVEGII 1knwA 394 :EVLFDNGQARLIRRR T0547 554 :QSILD 1knwA 409 :QTIEE T0547 578 :ISNSKLVN 1knwA 414 :LLALELLH Number of specific fragments extracted= 24 number of extra gaps= 0 total=5173 Will force an alignment to be made, even if fragment is small Number of alignments=209 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)P464 because last residue in template chain is (1knwA)H422 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIEN 1knwA 3 :HSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAA T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLGK 1knwA 43 :LKQFDVVRFAQKACSNIHILRLMREQGV T0547 107 :GLEAGSKAELLLAMAYNNE 1knwA 71 :KVDSVSLGEIERALAAGYN T0547 126 :GAPITVNGFKDRE 1knwA 94 :PDDIVFTADVIDQ T0547 140 :INIGF 1knwA 107 :ATLER T0547 146 :AAEMGHN 1knwA 112 :VSELQIP T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLH 1knwA 137 :HRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKL 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHL T0547 226 :QFTMIHFHLGSQ 1knwA 184 :QLVGIHMHIGSG T0547 239 :TEIHPLKKALNEAGNIYTEL 1knwA 196 :VDYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEY 1knwA 218 :DLQAISAGGGLSVPY T0547 282 :FKNEKSR 1knwA 233 :QQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKDL 1knwA 240 :DTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGS T0547 346 :ENKLILKKQNPKLIDE 1knwA 293 :RHFVLVDAGFNDLMRP T0547 362 :LYDLYKSIK 1knwA 310 :MYGSYHHIS T0547 371 :PSNALEYLHDSIDHLESILTLFDLGYVD 1knwA 324 :GRSLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGL 1knwA 393 :PEVLFDNGQARLIRRRQTIEELLALELL T0547 463 :M 1knwA 421 :H Number of specific fragments extracted= 22 number of extra gaps= 0 total=5195 Will force an alignment to be made, even if fragment is small Number of alignments=210 # 1knwA read from all-align.a2m # found chain 1knwA in template set T0547 32 :IDIVKELRDDGYKGPLLLRFPHLIQKQIENIYG 1knwA 13 :TAENLLRLPAEFGCPVWVYDAQIIRRQIAALKQ T0547 66 :FN 1knwA 46 :FD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APITVNGFKDRE 1knwA 95 :DDIVFTADVIDQ T0547 140 :INIGF 1knwA 107 :ATLER T0547 146 :AAEMGHN 1knwA 112 :VSELQIP T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLH 1knwA 137 :HRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKL 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHL T0547 226 :QFTMIHFHLGSQI 1knwA 184 :QLVGIHMHIGSGV T0547 243 :PLKKALNEAGNIYTELRKMGA 1knwA 197 :DYAHLEQVCGAMVRQVIEFGQ T0547 265 :NLKAINLGGGLAVEY 1knwA 218 :DLQAISAGGGLSVPY T0547 282 :FKNEKSR 1knwA 233 :QQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKDL 1knwA 240 :DTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGS T0547 346 :ENKLILKKQNPKLIDE 1knwA 293 :RHFVLVDAGFNDLMRP T0547 362 :LYDLYKSIKPSNALE 1knwA 310 :MYGSYHHISALAADG T0547 377 :YLHDSIDHLESILTLFDLGYVD 1knwA 330 :APTVETVVAGPLCESGDVFTQQ T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLE 1knwA 393 :PEVLFDNGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 21 number of extra gaps= 0 total=5216 Will force an alignment to be made, even if fragment is small Number of alignments=211 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)Q458 because last residue in template chain is (1knwA)H422 T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIY 1knwA 6 :FSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALK T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 1knwA 45 :QFDVVRFAQKACSNIHILRLMREQGV T0547 107 :GLEAGSKAELLLAMAYNNEG 1knwA 71 :KVDSVSLGEIERALAAGYNP T0547 127 :APITVNGFKDRE 1knwA 95 :DDIVFTADVIDQ T0547 140 :INIGF 1knwA 107 :ATLER T0547 146 :AAEMGH 1knwA 112 :VSELQI T0547 153 :I 1knwA 118 :P T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLH 1knwA 137 :HRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKL 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHL T0547 226 :QFTMIHFHLGSQ 1knwA 184 :QLVGIHMHIGSG T0547 239 :TEIHPLKKALNEAGNIYT 1knwA 196 :VDYAHLEQVCGAMVRQVI T0547 260 :KMGA 1knwA 214 :EFGQ T0547 265 :NLKAINLGGGLAVEY 1knwA 218 :DLQAISAGGGLSVPY T0547 282 :FKNEKSR 1knwA 233 :QQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKDL 1knwA 240 :DTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGS T0547 346 :ENKLILKKQNPKLIDE 1knwA 293 :RHFVLVDAGFNDLMRP T0547 362 :LYDLYKSIKPS 1knwA 310 :MYGSYHHISAL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 1knwA 326 :SLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLE 1knwA 393 :PEVLFDNGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 22 number of extra gaps= 0 total=5238 Will force an alignment to be made, even if fragment is small Number of alignments=212 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (1knwA)P2 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENI 1knwA 3 :HSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAAL T0547 64 :GNFN 1knwA 44 :KQFD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNE 1knwA 70 :VKVDSVSLGEIERALAAGYN T0547 126 :GAPITVNGFKDRE 1knwA 94 :PDDIVFTADVIDQ T0547 140 :INIGF 1knwA 107 :ATLER T0547 146 :AAEMG 1knwA 112 :VSELQ T0547 153 :ITLTIEGLNELEAIIDIAKE 1knwA 117 :IPVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLH 1knwA 137 :HRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKL 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHL T0547 226 :QFTMIHFHLGSQ 1knwA 184 :QLVGIHMHIGSG T0547 239 :TEIHPLKKALNEAGNIYTEL 1knwA 196 :VDYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEY 1knwA 218 :DLQAISAGGGLSVPY T0547 282 :FKNEKSR 1knwA 233 :QQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKDL 1knwA 240 :DTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGS T0547 346 :ENKLILKKQNPKLIDE 1knwA 293 :RHFVLVDAGFNDLMRP T0547 362 :LYDLYKSI 1knwA 310 :MYGSYHHI T0547 370 :KPSNALEYLHDSIDHLESILTLFDLGYVD 1knwA 323 :DGRSLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLE 1knwA 393 :PEVLFDNGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 22 number of extra gaps= 0 total=5260 Will force an alignment to be made, even if fragment is small Number of alignments=213 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)Q458 because last residue in template chain is (1knwA)H422 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIY 1knwA 3 :HSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALK T0547 65 :NF 1knwA 45 :QF T0547 77 :GG 1knwA 47 :DV T0547 81 :AVYPLKVNQYPGFVKNLVKLGK 1knwA 49 :VRFAQKACSNIHILRLMREQGV T0547 107 :GLEAGSKAELLLAMAYNNE 1knwA 71 :KVDSVSLGEIERALAAGYN T0547 126 :GAPITVNGFKDRE 1knwA 94 :PDDIVFTADVIDQ T0547 140 :INIGF 1knwA 107 :ATLER T0547 146 :AAEMGH 1knwA 112 :VSELQI T0547 153 :I 1knwA 118 :P T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLH 1knwA 137 :HRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKL 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHL T0547 226 :QFTMIHFHLGSQI 1knwA 184 :QLVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNI 1knwA 197 :DYAHLEQVCGAMVRQ T0547 258 :LRKMGA 1knwA 212 :VIEFGQ T0547 265 :NLKAINLGGGLAVEY 1knwA 218 :DLQAISAGGGLSVPY T0547 282 :FKNEKSR 1knwA 233 :QQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKDL 1knwA 240 :DTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGS T0547 346 :ENKLILKKQNPKLIDE 1knwA 293 :RHFVLVDAGFNDLMRP T0547 362 :LYDLYKSIKPSNALE 1knwA 310 :MYGSYHHISALAADG T0547 377 :YLHDSIDHLESILTLFDLG 1knwA 330 :APTVETVVAGPLCESGDVF T0547 396 :YVD 1knwA 351 :QEG T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLE 1knwA 393 :PEVLFDNGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 25 number of extra gaps= 0 total=5285 Will force an alignment to be made, even if fragment is small Number of alignments=214 # 1knwA read from all-align.a2m # found chain 1knwA in template set T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIEN 1knwA 6 :FSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAA T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLG 1knwA 43 :LKQFDVVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNE 1knwA 70 :VKVDSVSLGEIERALAAGYN T0547 126 :GAPITVNGFKDRE 1knwA 94 :PDDIVFTADVIDQ T0547 140 :INIGF 1knwA 107 :ATLER T0547 146 :AAEMGHN 1knwA 112 :VSELQIP T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLH 1knwA 137 :HRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKL 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHL T0547 226 :QFTMIHFHLGSQ 1knwA 184 :QLVGIHMHIGSG T0547 239 :TEIHPLKKALNEAGNIYTEL 1knwA 196 :VDYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEY 1knwA 218 :DLQAISAGGGLSVPY T0547 282 :FKNEKSR 1knwA 233 :QQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKDL 1knwA 240 :DTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGS T0547 346 :ENKLILKKQNPKLIDE 1knwA 293 :RHFVLVDAGFNDLMRP T0547 362 :LYDLYKSIK 1knwA 310 :MYGSYHHIS T0547 371 :PSNALEYLHDSIDHLESILTLFDLGYVD 1knwA 324 :GRSLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRP T0547 429 :LL 1knwA 392 :LP T0547 537 :IISINEKGYEVEG 1knwA 394 :EVLFDNGQARLIR T0547 582 :KLVNDKQKK 1knwA 407 :RRQTIEELL Number of specific fragments extracted= 23 number of extra gaps= 0 total=5308 Will force an alignment to be made, even if fragment is small Number of alignments=215 # 1knwA read from all-align.a2m # found chain 1knwA in template set T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIEN 1knwA 6 :FSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAA T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLGK 1knwA 43 :LKQFDVVRFAQKACSNIHILRLMREQGV T0547 107 :GLEAGSKAELLLAMAYNNE 1knwA 71 :KVDSVSLGEIERALAAGYN T0547 126 :GAPITVNGFKDRE 1knwA 94 :PDDIVFTADVIDQ T0547 140 :INIGF 1knwA 107 :ATLER T0547 146 :AAEMGHN 1knwA 112 :VSELQIP T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLH 1knwA 137 :HRVWLRVNPG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKL 1knwA 148 :GHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHL T0547 226 :QFTMIHFHLGSQ 1knwA 184 :QLVGIHMHIGSG T0547 239 :TEIHPLKKALNEAGNIYTEL 1knwA 196 :VDYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEY 1knwA 218 :DLQAISAGGGLSVPY T0547 282 :FKNEKSR 1knwA 233 :QQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKDL 1knwA 240 :DTEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGS T0547 346 :ENKLILKKQNPKLIDE 1knwA 293 :RHFVLVDAGFNDLMRP T0547 362 :LYDLYKSIK 1knwA 310 :MYGSYHHIS T0547 371 :PSNALEYLHDSIDHLESILTLFDLGYVD 1knwA 324 :GRSLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGL 1knwA 393 :PEVLFDNGQARLIRRRQTIEELLALELL T0547 463 :M 1knwA 421 :H Number of specific fragments extracted= 22 number of extra gaps= 0 total=5330 Will force an alignment to be made, even if fragment is small Number of alignments=216 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)G10 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 11 :NENFIIKNGKVC 1knwA 3 :HSLFSTDTDLTA T0547 29 :PAIIDIVKE 1knwA 15 :ENLLRLPAE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 1knwA 24 :FGCPVWVYDAQIIRRQIAALKQFD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APITV 1knwA 95 :DDIVF T0547 132 :NGFKDRELINIGF 1knwA 101 :ADVIDQATLERVS T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1knwA 114 :ELQIPVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGV 1knwA 137 :HRVWLRVNPGFGHG T0547 192 :GIWAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 152 :SQKTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 224 :LEQFT 1knwA 183 :LQLVG T0547 230 :IHFHLGSQ 1knwA 188 :IHMHIGSG T0547 239 :TEIHPLKKALNEAGNIYTEL 1knwA 196 :VDYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1knwA 218 :DLQAISAGGGLSVPYQQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKK 1knwA 240 :DTEHYYGLWNAAREQIARHLG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 261 :HPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 348 :KLILKK 1knwA 295 :FVLVDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1knwA 302 :FNDLMRPAMYGSYHHISALAADG T0547 377 :YLHDSIDHLESILTLF 1knwA 333 :VETVVAGPLCESGDVF T0547 393 :DLGY 1knwA 356 :VETR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 1knwA 360 :ALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLF T0547 437 :QERYLVNFSLFQSMPDFWGLEQNF 1knwA 398 :DNGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 23 number of extra gaps= 0 total=5353 Will force an alignment to be made, even if fragment is small Number of alignments=217 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)K28 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 29 :PAIIDIVKE 1knwA 15 :ENLLRLPAE T0547 43 :YKGPLLLRFPHLIQKQIENIY 1knwA 24 :FGCPVWVYDAQIIRRQIAALK T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 1knwA 45 :QFDVVRFAQKACSNIHILRLMREQGV T0547 107 :GLEAGSKAELLLAMAYNNEG 1knwA 71 :KVDSVSLGEIERALAAGYNP T0547 129 :ITV 1knwA 97 :IVF T0547 132 :NGFKDRELINIGF 1knwA 101 :ADVIDQATLERVS T0547 148 :EMGH 1knwA 114 :ELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 1knwA 137 :HRVWLRVNPGFGHGHSQKTNTG T0547 200 :INSKFGLTSTELIEAVNLLKENK 1knwA 160 :ENSKHGIWYTDLPAALDVIQRHH T0547 224 :LEQFT 1knwA 183 :LQLVG T0547 230 :IHFHLGSQI 1knwA 188 :IHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTE 1knwA 197 :DYAHLEQVCGAMVRQVIE T0547 261 :MGA 1knwA 215 :FGQ T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1knwA 218 :DLQAISAGGGLSVPYQQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKD 1knwA 240 :DTEHYYGLWNAAREQIARHLGH T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 262 :PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 348 :KLILKK 1knwA 295 :FVLVDA T0547 354 :QNPKLIDELYDLYKSI 1knwA 302 :FNDLMRPAMYGSYHHI T0547 370 :KPSNALE 1knwA 325 :RSLEHAP T0547 377 :YLHDSIDHLESILTLFDLGY 1knwA 333 :VETVVAGPLCESGDVFTQQE T0547 397 :VDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1knwA 359 :RALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQ T0547 441 :LVNFSLFQSMPDFWGLEQNF 1knwA 402 :ARLIRRRQTIEELLALELLH Number of specific fragments extracted= 23 number of extra gaps= 0 total=5376 Will force an alignment to be made, even if fragment is small Number of alignments=218 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)N11 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 12 :ENFIIKNGKVCI 1knwA 3 :HSLFSTDTDLTA T0547 29 :PAIIDIVKE 1knwA 15 :ENLLRLPAE T0547 43 :YKGPLLLRFPHLIQKQIENI 1knwA 24 :FGCPVWVYDAQIIRRQIAAL T0547 64 :GNFN 1knwA 44 :KQFD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APITVNGF 1knwA 95 :DDIVFTAD T0547 135 :KDRELINIGF 1knwA 104 :IDQATLERVS T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1knwA 114 :ELQIPVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 1knwA 137 :HRVWLRVNPGFGHGHSQKTNTG T0547 200 :INSKFGLTSTELIEAVNLLKENK 1knwA 160 :ENSKHGIWYTDLPAALDVIQRHH T0547 224 :LEQFT 1knwA 183 :LQLVG T0547 230 :IHFHLGSQI 1knwA 188 :IHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1knwA 218 :DLQAISAGGGLSVPYQQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKD 1knwA 240 :DTEHYYGLWNAAREQIARHLGH T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 262 :PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 348 :KLILKK 1knwA 295 :FVLVDA T0547 354 :QNPKLIDELYDLYKSI 1knwA 302 :FNDLMRPAMYGSYHHI T0547 370 :KPSNALE 1knwA 325 :RSLEHAP T0547 377 :YLHDSIDHLESILTLFDLGY 1knwA 333 :VETVVAGPLCESGDVFTQQE T0547 397 :VDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1knwA 359 :RALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQ T0547 441 :LVNFSLFQSMPDFWGLEQNF 1knwA 402 :ARLIRRRQTIEELLALELLH Number of specific fragments extracted= 24 number of extra gaps= 0 total=5400 Will force an alignment to be made, even if fragment is small Number of alignments=219 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)K28 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 29 :PAIIDIVKELRD 1knwA 12 :LTAENLLRLPAE T0547 43 :YKGPLLLRFPHLIQKQIENIY 1knwA 24 :FGCPVWVYDAQIIRRQIAALK T0547 65 :NF 1knwA 45 :QF T0547 77 :G 1knwA 47 :D T0547 80 :NAVYPLKVNQYPGFVKNLVKLGK 1knwA 48 :VVRFAQKACSNIHILRLMREQGV T0547 107 :GLEAGSKAELLLAMAYNNEG 1knwA 71 :KVDSVSLGEIERALAAGYNP T0547 127 :APITVNGF 1knwA 95 :DDIVFTAD T0547 135 :KDRELINIGF 1knwA 104 :IDQATLERVS T0547 148 :EMGH 1knwA 114 :ELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 1knwA 137 :HRVWLRVNPGFGHGHSQKTNTG T0547 200 :INSKFGLTSTELIEAVNLLKENK 1knwA 160 :ENSKHGIWYTDLPAALDVIQRHH T0547 224 :LEQFT 1knwA 183 :LQLVG T0547 230 :IHFHLGSQI 1knwA 188 :IHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYT 1knwA 197 :DYAHLEQVCGAMVRQVI T0547 260 :KMGA 1knwA 214 :EFGQ T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1knwA 218 :DLQAISAGGGLSVPYQQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKD 1knwA 240 :DTEHYYGLWNAAREQIARHLGH T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 262 :PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 348 :KLILKK 1knwA 295 :FVLVDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1knwA 302 :FNDLMRPAMYGSYHHISALAADG T0547 377 :YLHDSIDHLESILTLFDL 1knwA 333 :VETVVAGPLCESGDVFTQ T0547 395 :GYVD 1knwA 354 :GNVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQ T0547 441 :LVNFSLFQSMPDFWGLEQNF 1knwA 402 :ARLIRRRQTIEELLALELLH Number of specific fragments extracted= 25 number of extra gaps= 0 total=5425 Will force an alignment to be made, even if fragment is small Number of alignments=220 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 1 :MMDYG 1knwA 2 :PHSLF T0547 25 :YEKK 1knwA 7 :STDT T0547 29 :PAIIDIVKE 1knwA 15 :ENLLRLPAE T0547 43 :YKGPLLLRFPHLIQKQIENI 1knwA 24 :FGCPVWVYDAQIIRRQIAAL T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 1knwA 44 :KQFDVVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APITVNGF 1knwA 95 :DDIVFTAD T0547 135 :KDRELINIGF 1knwA 104 :IDQATLERVS T0547 148 :EMGHN 1knwA 114 :ELQIP T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 1knwA 137 :HRVWLRVNPGFGHGHSQKTNTG T0547 200 :INSKFGLTSTELIEAVNLLKENK 1knwA 160 :ENSKHGIWYTDLPAALDVIQRHH T0547 224 :LEQFT 1knwA 183 :LQLVG T0547 230 :IHFHLGSQ 1knwA 188 :IHMHIGSG T0547 239 :TEIHPLKKALNEAGNIYTEL 1knwA 196 :VDYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1knwA 218 :DLQAISAGGGLSVPYQQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKD 1knwA 240 :DTEHYYGLWNAAREQIARHLGH T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 262 :PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 348 :KLILKK 1knwA 295 :FVLVDA T0547 354 :QNPKLIDELYDLYKSI 1knwA 302 :FNDLMRPAMYGSYHHI T0547 370 :KPSNALE 1knwA 325 :RSLEHAP T0547 377 :YLHDSIDHLESILTLF 1knwA 333 :VETVVAGPLCESGDVF T0547 393 :DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1knwA 355 :NVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQ T0547 441 :LVNFSLFQSMPDFWGLEQNF 1knwA 402 :ARLIRRRQTIEELLALELLH Number of specific fragments extracted= 25 number of extra gaps= 0 total=5450 Will force an alignment to be made, even if fragment is small Number of alignments=221 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)K28 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 29 :PAIIDIVKE 1knwA 15 :ENLLRLPAE T0547 43 :YKGPLLLRFPHLIQKQIE 1knwA 24 :FGCPVWVYDAQIIRRQIA T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLGK 1knwA 43 :LKQFDVVRFAQKACSNIHILRLMREQGV T0547 107 :GLEAGSKAELLLAMAYNNEG 1knwA 71 :KVDSVSLGEIERALAAGYNP T0547 127 :APITV 1knwA 95 :DDIVF T0547 132 :NGFKDRELINIGF 1knwA 101 :ADVIDQATLERVS T0547 148 :EMGHN 1knwA 114 :ELQIP T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 1knwA 137 :HRVWLRVNPGFGHGHSQKTNTG T0547 200 :INSKFGLTSTELIEAVNLLK 1knwA 160 :ENSKHGIWYTDLPAALDVIQ T0547 221 :NKLLEQFT 1knwA 180 :RHHLQLVG T0547 230 :IHFHLGSQI 1knwA 188 :IHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1knwA 218 :DLQAISAGGGLSVPYQQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKD 1knwA 240 :DTEHYYGLWNAAREQIARHLGH T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 262 :PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 348 :KLILKK 1knwA 295 :FVLVDA T0547 354 :QNPKLIDELYDLYKSI 1knwA 302 :FNDLMRPAMYGSYHHI T0547 370 :KPSNALE 1knwA 325 :RSLEHAP T0547 377 :YLHDSIDHLESILTLF 1knwA 333 :VETVVAGPLCESGDVF T0547 393 :DLGYVD 1knwA 352 :EGGNVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQ T0547 441 :LVNFSLFQSMPDFWGLEQNF 1knwA 402 :ARLIRRRQTIEELLALELLH Number of specific fragments extracted= 24 number of extra gaps= 0 total=5474 Will force an alignment to be made, even if fragment is small Number of alignments=222 # 1knwA read from all-align.a2m # found chain 1knwA in template set T0547 29 :PAIIDIVKE 1knwA 15 :ENLLRLPAE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 1knwA 24 :FGCPVWVYDAQIIRRQIAALKQFD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APITV 1knwA 95 :DDIVF T0547 132 :NGFKDRELINIGF 1knwA 101 :ADVIDQATLERVS T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1knwA 114 :ELQIPVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGV 1knwA 137 :HRVWLRVNPGFGHG T0547 192 :GIWAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 152 :SQKTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 224 :LEQFT 1knwA 183 :LQLVG T0547 230 :IHFHLGSQ 1knwA 188 :IHMHIGSG T0547 239 :TEIHPLKKALNEAGNIYTEL 1knwA 196 :VDYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1knwA 218 :DLQAISAGGGLSVPYQQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKK 1knwA 240 :DTEHYYGLWNAAREQIARHLG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 261 :HPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 348 :KLILKK 1knwA 295 :FVLVDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1knwA 302 :FNDLMRPAMYGSYHHISALAADG T0547 377 :YLHDSIDHLESILTLF 1knwA 333 :VETVVAGPLCESGDVF T0547 393 :DLGY 1knwA 356 :VETR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 1knwA 360 :ALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLF T0547 437 :QERYLVNFSLFQSMPDFWGLEQNF 1knwA 398 :DNGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 22 number of extra gaps= 0 total=5496 Will force an alignment to be made, even if fragment is small Number of alignments=223 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 30 :AIIDIVKE 1knwA 16 :NLLRLPAE T0547 43 :YKGPLLLRFPHLIQKQIENIY 1knwA 24 :FGCPVWVYDAQIIRRQIAALK T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 1knwA 45 :QFDVVRFAQKACSNIHILRLMREQGV T0547 107 :GLEAGSKAELLLAMAYNNEG 1knwA 71 :KVDSVSLGEIERALAAGYNP T0547 129 :ITV 1knwA 97 :IVF T0547 132 :NGFKDRELINIGF 1knwA 101 :ADVIDQATLERVS T0547 148 :EMGH 1knwA 114 :ELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 1knwA 137 :HRVWLRVNPGFGHGHSQKTNTG T0547 200 :INSKFGLTSTELIEAVNLLKENK 1knwA 160 :ENSKHGIWYTDLPAALDVIQRHH T0547 224 :LEQFT 1knwA 183 :LQLVG T0547 230 :IHFHLGSQI 1knwA 188 :IHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTE 1knwA 197 :DYAHLEQVCGAMVRQVIE T0547 261 :MGA 1knwA 215 :FGQ T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1knwA 218 :DLQAISAGGGLSVPYQQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKD 1knwA 240 :DTEHYYGLWNAAREQIARHLGH T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 262 :PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 348 :KLILKK 1knwA 295 :FVLVDA T0547 354 :QNPKLIDELYDLYKSI 1knwA 302 :FNDLMRPAMYGSYHHI T0547 370 :KPSNALE 1knwA 325 :RSLEHAP T0547 377 :YLHDSIDHLESILTLFDLGY 1knwA 333 :VETVVAGPLCESGDVFTQQE T0547 397 :VDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1knwA 359 :RALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQ T0547 441 :LVNFSLFQSMPDFWGLEQNF 1knwA 402 :ARLIRRRQTIEELLALELLH Number of specific fragments extracted= 23 number of extra gaps= 0 total=5519 Will force an alignment to be made, even if fragment is small Number of alignments=224 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 14 :FIIKNGKVCI 1knwA 5 :LFSTDTDLTA T0547 29 :PAIIDIVKE 1knwA 15 :ENLLRLPAE T0547 43 :YKGPLLLRFPHLIQKQIENI 1knwA 24 :FGCPVWVYDAQIIRRQIAAL T0547 64 :GNFN 1knwA 44 :KQFD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APITVNGF 1knwA 95 :DDIVFTAD T0547 135 :KDRELINIGF 1knwA 104 :IDQATLERVS T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1knwA 114 :ELQIPVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 1knwA 137 :HRVWLRVNPGFGHGHSQKTNTG T0547 200 :INSKFGLTSTELIEAVNLLKENK 1knwA 160 :ENSKHGIWYTDLPAALDVIQRHH T0547 224 :LEQFT 1knwA 183 :LQLVG T0547 230 :IHFHLGSQI 1knwA 188 :IHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1knwA 218 :DLQAISAGGGLSVPYQQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKD 1knwA 240 :DTEHYYGLWNAAREQIARHLGH T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 262 :PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 348 :KLILKK 1knwA 295 :FVLVDA T0547 354 :QNPKLIDELYDLYKSI 1knwA 302 :FNDLMRPAMYGSYHHI T0547 370 :KPSNALE 1knwA 325 :RSLEHAP T0547 377 :YLHDSIDHLESILTLFDLGY 1knwA 333 :VETVVAGPLCESGDVFTQQE T0547 397 :VDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1knwA 359 :RALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQ T0547 441 :LVNFSLFQSMPDFWGLEQNF 1knwA 402 :ARLIRRRQTIEELLALELLH Number of specific fragments extracted= 24 number of extra gaps= 0 total=5543 Will force an alignment to be made, even if fragment is small Number of alignments=225 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 31 :IIDIVKE 1knwA 17 :LLRLPAE T0547 43 :YKGPLLLRFPHLIQKQIENIY 1knwA 24 :FGCPVWVYDAQIIRRQIAALK T0547 65 :NF 1knwA 45 :QF T0547 77 :G 1knwA 47 :D T0547 80 :NAVYPLKVNQYPGFVKNLVKLGK 1knwA 48 :VVRFAQKACSNIHILRLMREQGV T0547 107 :GLEAGSKAELLLAMAYNNEG 1knwA 71 :KVDSVSLGEIERALAAGYNP T0547 127 :APITVNGF 1knwA 95 :DDIVFTAD T0547 135 :KDRELINIGF 1knwA 104 :IDQATLERVS T0547 148 :EMGH 1knwA 114 :ELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 1knwA 137 :HRVWLRVNPGFGHGHSQKTNTG T0547 200 :INSKFGLTSTELIEAVNLLKENK 1knwA 160 :ENSKHGIWYTDLPAALDVIQRHH T0547 224 :LEQFT 1knwA 183 :LQLVG T0547 230 :IHFHLGSQI 1knwA 188 :IHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYT 1knwA 197 :DYAHLEQVCGAMVRQVI T0547 260 :KMGA 1knwA 214 :EFGQ T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1knwA 218 :DLQAISAGGGLSVPYQQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKD 1knwA 240 :DTEHYYGLWNAAREQIARHLGH T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 262 :PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 348 :KLILKK 1knwA 295 :FVLVDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1knwA 302 :FNDLMRPAMYGSYHHISALAADG T0547 377 :YLHDSIDHLESILTLFDL 1knwA 333 :VETVVAGPLCESGDVFTQ T0547 395 :GYVD 1knwA 354 :GNVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQ T0547 441 :LVNFSLFQSMPDFWGLEQNF 1knwA 402 :ARLIRRRQTIEELLALELLH Number of specific fragments extracted= 25 number of extra gaps= 0 total=5568 Will force an alignment to be made, even if fragment is small Number of alignments=226 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 30 :AIIDIVKE 1knwA 16 :NLLRLPAE T0547 43 :YKGPLLLRFPHLIQKQIENI 1knwA 24 :FGCPVWVYDAQIIRRQIAAL T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 1knwA 44 :KQFDVVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APITVNGF 1knwA 95 :DDIVFTAD T0547 135 :KDRELINIGF 1knwA 104 :IDQATLERVS T0547 148 :EMGHN 1knwA 114 :ELQIP T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 1knwA 137 :HRVWLRVNPGFGHGHSQKTNTG T0547 200 :INSKFGLTSTELIEAVNLLKENK 1knwA 160 :ENSKHGIWYTDLPAALDVIQRHH T0547 224 :LEQFT 1knwA 183 :LQLVG T0547 230 :IHFHLGSQ 1knwA 188 :IHMHIGSG T0547 239 :TEIHPLKKALNEAGNIYTEL 1knwA 196 :VDYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1knwA 218 :DLQAISAGGGLSVPYQQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKD 1knwA 240 :DTEHYYGLWNAAREQIARHLGH T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 262 :PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 348 :KLILKK 1knwA 295 :FVLVDA T0547 354 :QNPKLIDELYDLYKSI 1knwA 302 :FNDLMRPAMYGSYHHI T0547 370 :KPSNALE 1knwA 325 :RSLEHAP T0547 377 :YLHDSIDHLESILTLF 1knwA 333 :VETVVAGPLCESGDVF T0547 393 :DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1knwA 355 :NVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQ T0547 441 :LVNFSLFQSMPDFWGLEQNF 1knwA 402 :ARLIRRRQTIEELLALELLH Number of specific fragments extracted= 23 number of extra gaps= 0 total=5591 Will force an alignment to be made, even if fragment is small Number of alignments=227 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 30 :AIIDIVKE 1knwA 16 :NLLRLPAE T0547 43 :YKGPLLLRFPHLIQKQIE 1knwA 24 :FGCPVWVYDAQIIRRQIA T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLGK 1knwA 43 :LKQFDVVRFAQKACSNIHILRLMREQGV T0547 107 :GLEAGSKAELLLAMAYNNEG 1knwA 71 :KVDSVSLGEIERALAAGYNP T0547 127 :APITV 1knwA 95 :DDIVF T0547 132 :NGFKDRELINIGF 1knwA 101 :ADVIDQATLERVS T0547 148 :EMGHN 1knwA 114 :ELQIP T0547 155 :LTIEGLNELEAIIDIAKE 1knwA 119 :VNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 1knwA 137 :HRVWLRVNPGFGHGHSQKTNTG T0547 200 :INSKFGLTSTELIEAVNLLK 1knwA 160 :ENSKHGIWYTDLPAALDVIQ T0547 221 :NKLLEQFT 1knwA 180 :RHHLQLVG T0547 230 :IHFHLGSQI 1knwA 188 :IHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 262 :GA 1knwA 216 :GQ T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1knwA 218 :DLQAISAGGGLSVPYQQGEEAV T0547 291 :TLREYANDVVFILKNIAEQKKD 1knwA 240 :DTEHYYGLWNAAREQIARHLGH T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1knwA 262 :PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH T0547 348 :KLILKK 1knwA 295 :FVLVDA T0547 354 :QNPKLIDELYDLYKSI 1knwA 302 :FNDLMRPAMYGSYHHI T0547 370 :KPSNALE 1knwA 325 :RSLEHAP T0547 377 :YLHDSIDHLESILTLF 1knwA 333 :VETVVAGPLCESGDVF T0547 393 :DLGYVD 1knwA 352 :EGGNVE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1knwA 361 :LPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQ T0547 441 :LVNFSLFQSMPDFWGLEQNF 1knwA 402 :ARLIRRRQTIEELLALELLH Number of specific fragments extracted= 24 number of extra gaps= 0 total=5615 Will force an alignment to be made, even if fragment is small Number of alignments=228 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)E26 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 27 :KK 1knwA 3 :HS T0547 29 :PAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 1knwA 10 :TDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALKQFD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1knwA 70 :VKVDSVSLGEIERALAAGYNPQ T0547 128 :PITVNGFKDRELINIGFIAAEM 1knwA 96 :DIVFTADVIDQATLERVSELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGI 1knwA 137 :HRVWLRVNPGFGHGHS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 154 :KTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 225 :EQFTMIHFHLGSQIT 1knwA 183 :LQLVGIHMHIGSGVD T0547 245 :KKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREY 1knwA 198 :YAHLEQVCGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLW T0547 301 :FILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1knwA 249 :NAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 1knwA 326 :SLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDR 1knwA 359 :RALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1knwA 364 :VKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 14 number of extra gaps= 0 total=5629 Will force an alignment to be made, even if fragment is small Number of alignments=229 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIY 1knwA 3 :HSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALK T0547 65 :NFN 1knwA 45 :QFD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 128 :PITVNGFKDRELINIGFIAAEM 1knwA 96 :DIVFTADVIDQATLERVSELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGI 1knwA 137 :HRVWLRVNPGFGHGHS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 154 :KTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 225 :EQFTMIHFHLGSQI 1knwA 183 :LQLVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYT 1knwA 197 :DYAHLEQVCGAMVRQVI T0547 261 :MGAKNLKAINLGGGLAVEYSQFKNEKSR 1knwA 214 :EFGQDLQAISAGGGLSVPYQQGEEAVDT T0547 293 :REYANDVVFILKNIAEQKKDL 1knwA 242 :EHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 1knwA 326 :SLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDR 1knwA 359 :RALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1knwA 364 :VKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 16 number of extra gaps= 0 total=5645 Will force an alignment to be made, even if fragment is small Number of alignments=230 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)T473 because last residue in template chain is (1knwA)H422 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENI 1knwA 3 :HSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAAL T0547 64 :GNFN 1knwA 44 :KQFD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1knwA 70 :VKVDSVSLGEIERALAAGYNPQ T0547 128 :PITVNGFKDRELINIGFIAAEM 1knwA 96 :DIVFTADVIDQATLERVSELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGI 1knwA 137 :HRVWLRVNPGFGHGHS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 154 :KTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 225 :EQFTMIHFHLGSQI 1knwA 183 :LQLVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 1knwA 216 :GQDLQAISAGGGLSVPYQQGEEAVD T0547 292 :LREYANDVVFILKNIAEQKKDL 1knwA 241 :TEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 1knwA 326 :SLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDR 1knwA 359 :RALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 1knwA 364 :VKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELLALELL T0547 472 :P 1knwA 421 :H Number of specific fragments extracted= 17 number of extra gaps= 0 total=5662 Will force an alignment to be made, even if fragment is small Number of alignments=231 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (1knwA)P2 Warning: unaligning (T0547)Y605 because last residue in template chain is (1knwA)H422 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYG 1knwA 3 :HSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALKQ T0547 66 :FN 1knwA 46 :FD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APITVNGFKDRELINIGFIAAEM 1knwA 95 :DDIVFTADVIDQATLERVSELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGI 1knwA 137 :HRVWLRVNPGFGHGHS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 154 :KTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 225 :EQFTMIHFHLGSQI 1knwA 183 :LQLVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYT 1knwA 197 :DYAHLEQVCGAMVRQVI T0547 260 :KM 1knwA 214 :EF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1knwA 216 :GQDLQAISAGGGLSVPYQQGEEAVDT T0547 293 :REYANDVVFILKNIAEQKKDL 1knwA 242 :EHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 1knwA 326 :SLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDR 1knwA 359 :RALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1knwA 364 :VKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 17 number of extra gaps= 0 total=5679 Will force an alignment to be made, even if fragment is small Number of alignments=232 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)T473 because last residue in template chain is (1knwA)H422 T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIEN 1knwA 7 :STDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAA T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLG 1knwA 43 :LKQFDVVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1knwA 70 :VKVDSVSLGEIERALAAGYNPQ T0547 128 :PITVNGFKDRELINIGFIAAEM 1knwA 96 :DIVFTADVIDQATLERVSELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGI 1knwA 137 :HRVWLRVNPGFGHGHS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 154 :KTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 225 :EQFTMIHFHLGSQI 1knwA 183 :LQLVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 1knwA 216 :GQDLQAISAGGGLSVPYQQGEEAVD T0547 292 :LREYANDVVFILKNIAEQKKD 1knwA 241 :TEHYYGLWNAAREQIARHLGH T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1knwA 262 :PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1knwA 326 :SLEHAPTVETVVAGPLCESGDVFTQQEGGN T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFW 1knwA 364 :VKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELL T0547 467 :RLDEEP 1knwA 416 :ALELLH Number of specific fragments extracted= 15 number of extra gaps= 0 total=5694 Will force an alignment to be made, even if fragment is small Number of alignments=233 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIEN 1knwA 7 :STDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAA T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLG 1knwA 43 :LKQFDVVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1knwA 70 :VKVDSVSLGEIERALAAGYNPQ T0547 128 :PITVNGFKDRELINIGFIAAEM 1knwA 96 :DIVFTADVIDQATLERVSELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGI 1knwA 137 :HRVWLRVNPGFGHGHS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 154 :KTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 225 :EQFTMIHFHLGSQI 1knwA 183 :LQLVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1knwA 216 :GQDLQAISAGGGLSVPYQQGEEAVDT T0547 293 :REYANDVVFILKNIAEQKKDL 1knwA 242 :EHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1knwA 326 :SLEHAPTVETVVAGPLCESGDVFTQQEGGN T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1knwA 364 :VKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 14 number of extra gaps= 0 total=5708 Will force an alignment to be made, even if fragment is small Number of alignments=234 # 1knwA read from all-align.a2m # found chain 1knwA in template set T0547 31 :IIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 1knwA 12 :LTAENLLRLPAEFGCPVWVYDAQIIRRQIAALKQFD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1knwA 70 :VKVDSVSLGEIERALAAGYNPQ T0547 128 :PITVNGFKDRELINIGFIAAEM 1knwA 96 :DIVFTADVIDQATLERVSELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGI 1knwA 137 :HRVWLRVNPGFGHGHS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 154 :KTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 225 :EQFTMIHFHLGSQIT 1knwA 183 :LQLVGIHMHIGSGVD T0547 245 :KKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREY 1knwA 198 :YAHLEQVCGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLW T0547 301 :FILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1knwA 249 :NAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 1knwA 326 :SLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDR 1knwA 359 :RALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 1knwA 364 :VKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELLALELL Number of specific fragments extracted= 13 number of extra gaps= 0 total=5721 Will force an alignment to be made, even if fragment is small Number of alignments=235 # 1knwA read from all-align.a2m # found chain 1knwA in template set T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIY 1knwA 7 :STDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALK T0547 65 :NFN 1knwA 45 :QFD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 128 :PITVNGFKDRELINIGFIAAEM 1knwA 96 :DIVFTADVIDQATLERVSELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGI 1knwA 137 :HRVWLRVNPGFGHGHS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 154 :KTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 225 :EQFTMIHFHLGSQI 1knwA 183 :LQLVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYT 1knwA 197 :DYAHLEQVCGAMVRQVI T0547 261 :MGAKNLKAINLGGGLAVEYSQFKNEKSR 1knwA 214 :EFGQDLQAISAGGGLSVPYQQGEEAVDT T0547 293 :REYANDVVFILKNIAEQKKDL 1knwA 242 :EHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 1knwA 326 :SLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDR 1knwA 359 :RALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 1knwA 364 :VKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELLALELL Number of specific fragments extracted= 16 number of extra gaps= 0 total=5737 Will force an alignment to be made, even if fragment is small Number of alignments=236 # 1knwA read from all-align.a2m # found chain 1knwA in template set T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENI 1knwA 3 :HSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAAL T0547 64 :GNFN 1knwA 44 :KQFD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1knwA 70 :VKVDSVSLGEIERALAAGYNPQ T0547 128 :PITVNGFKDRELINIGFIAAEM 1knwA 96 :DIVFTADVIDQATLERVSELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGI 1knwA 137 :HRVWLRVNPGFGHGHS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 154 :KTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 225 :EQFTMIHFHLGSQI 1knwA 183 :LQLVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 1knwA 216 :GQDLQAISAGGGLSVPYQQGEEAVD T0547 292 :LREYANDVVFILKNIAEQKKDL 1knwA 241 :TEHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 1knwA 326 :SLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDR 1knwA 359 :RALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 1knwA 364 :VKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELLALELL Number of specific fragments extracted= 16 number of extra gaps= 0 total=5753 Will force an alignment to be made, even if fragment is small Number of alignments=237 # 1knwA read from all-align.a2m # found chain 1knwA in template set T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYG 1knwA 6 :FSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALKQ T0547 66 :FN 1knwA 46 :FD T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 1knwA 48 :VVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1knwA 70 :VKVDSVSLGEIERALAAGYNP T0547 127 :APITVNGFKDRELINIGFIAAEM 1knwA 95 :DDIVFTADVIDQATLERVSELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGI 1knwA 137 :HRVWLRVNPGFGHGHS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 154 :KTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 225 :EQFTMIHFHLGSQI 1knwA 183 :LQLVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYT 1knwA 197 :DYAHLEQVCGAMVRQVI T0547 260 :KM 1knwA 214 :EF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1knwA 216 :GQDLQAISAGGGLSVPYQQGEEAVDT T0547 293 :REYANDVVFILKNIAEQKKDL 1knwA 242 :EHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 1knwA 326 :SLEHAPTVETVVAGPLCESGDVFTQQ T0547 399 :LQDR 1knwA 359 :RALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 1knwA 364 :VKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELLALELL Number of specific fragments extracted= 17 number of extra gaps= 0 total=5770 Will force an alignment to be made, even if fragment is small Number of alignments=238 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)T473 because last residue in template chain is (1knwA)H422 T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIEN 1knwA 7 :STDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAA T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLG 1knwA 43 :LKQFDVVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1knwA 70 :VKVDSVSLGEIERALAAGYNPQ T0547 128 :PITVNGFKDRELINIGFIAAEM 1knwA 96 :DIVFTADVIDQATLERVSELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGI 1knwA 137 :HRVWLRVNPGFGHGHS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 154 :KTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 225 :EQFTMIHFHLGSQI 1knwA 183 :LQLVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 1knwA 216 :GQDLQAISAGGGLSVPYQQGEEAVD T0547 292 :LREYANDVVFILKNIAEQKKD 1knwA 241 :TEHYYGLWNAAREQIARHLGH T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1knwA 262 :PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1knwA 326 :SLEHAPTVETVVAGPLCESGDVFTQQEGGN T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFW 1knwA 364 :VKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELL T0547 467 :RLDEEP 1knwA 416 :ALELLH Number of specific fragments extracted= 15 number of extra gaps= 0 total=5785 Will force an alignment to be made, even if fragment is small Number of alignments=239 # 1knwA read from all-align.a2m # found chain 1knwA in template set Warning: unaligning (T0547)P461 because last residue in template chain is (1knwA)H422 T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIEN 1knwA 7 :STDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAA T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLG 1knwA 43 :LKQFDVVRFAQKACSNIHILRLMREQG T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1knwA 70 :VKVDSVSLGEIERALAAGYNPQ T0547 128 :PITVNGFKDRELINIGFIAAEM 1knwA 96 :DIVFTADVIDQATLERVSELQI T0547 154 :TLTIEGLNELEAIIDIAKE 1knwA 118 :PVNAGSVDMLDQLGQVSPG T0547 178 :PNIGLRVRLHSAGVGI 1knwA 137 :HRVWLRVNPGFGHGHS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 1knwA 154 :KTNTGGENSKHGIWYTDLPAALDVIQRHH T0547 225 :EQFTMIHFHLGSQI 1knwA 183 :LQLVGIHMHIGSGV T0547 240 :EIHPLKKALNEAGNIYTEL 1knwA 197 :DYAHLEQVCGAMVRQVIEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1knwA 216 :GQDLQAISAGGGLSVPYQQGEEAVDT T0547 293 :REYANDVVFILKNIAEQKKDL 1knwA 242 :EHYYGLWNAAREQIARHLGHP T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1knwA 263 :VKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 1knwA 326 :SLEHAPTVETVVAGPLCESGDVFTQQEGGN T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1knwA 364 :VKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELLALELLH Number of specific fragments extracted= 14 number of extra gaps= 0 total=5799 Will force an alignment to be made, even if fragment is small Number of alignments=240 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1rcqA 2 :RPARALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELI 1rcqA 27 :RALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQPILLLEGFFEASEL T0547 143 :GFIA 1rcqA 88 :ELIV T0547 148 :EM 1rcqA 92 :AH T0547 152 :NITLTIEGLNELEAI 1rcqA 94 :DFWCVVHCAWQLEAI T0547 169 :I 1rcqA 111 :A T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :RL 1rcqA 124 :DS T0547 190 :GVG 1rcqA 126 :GMH T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 223 :LLE 1rcqA 149 :KVA T0547 227 :FTMIHFHLG 1rcqA 152 :KIVMMSHFS T0547 236 :SQITEIHPLKKALNEAGNIYTELR 1rcqA 162 :ADELDCPRTEEQLAAFSAASQGLE T0547 267 :KAINLGGGLAVEYSQ 1rcqA 186 :GEISLRNSPAVLGWP T0547 284 :N 1rcqA 201 :K T0547 289 :NYTLR 1rcqA 203 :PSDWV T0547 298 :DVVFILKNIAEQKKDLEPDIFIESGRFVAAN 1rcqA 208 :RPGILLYGATPFERAHPLADRLRPVMTLESK T0547 329 :HAVLIAPVLELFSQE 1rcqA 247 :AGEPVGYGARYSTER T0547 541 :NEKGYEVEG 1rcqA 289 :DGKPGRLVG T0547 550 :IIEAQSILDTLEDLDYDIHAIMDILNERISNSKLVN 1rcqA 299 :VSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAA T0547 588 :QKKHILGELYLFL 1rcqA 335 :QFGSIPYQLLCNL T0547 602 :DNGYLKSIGV 1rcqA 348 :KRVPRVYSGA Number of specific fragments extracted= 22 number of extra gaps= 3 total=5821 Will force an alignment to be made, even if fragment is small Number of alignments=241 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)S387 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)I388 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 59 :IENIYGNFNKARKEF 1rcqA 10 :LQALRHNYRLAREAT T0547 80 :NAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELI 1rcqA 27 :RALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQPILLLEGFFEASEL T0547 143 :GFIA 1rcqA 88 :ELIV T0547 148 :EM 1rcqA 92 :AH T0547 152 :NITLTIEGLNELEAI 1rcqA 94 :DFWCVVHCAWQLEAI T0547 169 :I 1rcqA 111 :A T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :RL 1rcqA 124 :DS T0547 190 :GVG 1rcqA 126 :GMH T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 223 :LLE 1rcqA 149 :KVA T0547 227 :FTMIHFHLG 1rcqA 152 :KIVMMSHFS T0547 236 :SQITEIHPLKKALNEAGNIYTELR 1rcqA 162 :ADELDCPRTEEQLAAFSAASQGLE T0547 267 :KAINLGGGLAVEYSQ 1rcqA 186 :GEISLRNSPAVLGWP T0547 284 :N 1rcqA 201 :K T0547 289 :NYTLR 1rcqA 203 :PSDWV T0547 298 :DVVFILKNIAEQKKDLEPDIFIESGRFVAAN 1rcqA 208 :RPGILLYGATPFERAHPLADRLRPVMTLESK T0547 329 :HAVLIAPVLELFSQE 1rcqA 247 :AGEPVGYGARYSTER T0547 386 :E 1rcqA 262 :R T0547 389 :LTLFDLGYVDLQDRSNAEILTHLI 1rcqA 265 :IGVVAMGYADGYPRHAADGTLVFI T0547 472 :PTRSASIWDITCDSDGEISYS 1rcqA 289 :DGKPGRLVGRVSMDMLTVDLT T0547 494 :D 1rcqA 310 :D T0547 499 :LHDVDVEK 1rcqA 311 :HPQAGLGS T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1rcqA 319 :RVELWGPNVPVGALAAQFGSIPYQLLCNLK Number of specific fragments extracted= 24 number of extra gaps= 4 total=5845 Will force an alignment to be made, even if fragment is small Number of alignments=242 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)Q354 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N355 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 46 :PL 1rcqA 3 :PA T0547 48 :LLRFPHLIQKQIENIYGNF 1rcqA 6 :ALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKVNQ 1rcqA 27 :RALAVIKADA T0547 90 :YPGFVKNL 1rcqA 41 :AVRCAEAL T0547 99 :KLGKD 1rcqA 49 :AAEAD T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 54 :GFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 144 :FIAAEMGHNITLTIEGLNELEAI 1rcqA 86 :ELELIVAHDFWCVVHCAWQLEAI T0547 169 :I 1rcqA 111 :A T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :R 1rcqA 124 :D T0547 197 :SGG 1rcqA 125 :SGM T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LL 1rcqA 149 :KV T0547 226 :QFTMIHFHLG 1rcqA 151 :AKIVMMSHFS T0547 236 :SQITEIHPLKKALNEAGNIYTELRKM 1rcqA 162 :ADELDCPRTEEQLAAFSAASQGLEGE T0547 269 :INLGGGLAVEYSQ 1rcqA 188 :ISLRNSPAVLGWP T0547 284 :N 1rcqA 201 :K T0547 288 :RNYTLREYANDV 1rcqA 202 :VPSDWVRPGILL T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1rcqA 214 :YGATPFERAHPLADRLRPVMTLESKVISVRDLP T0547 351 :LKK 1rcqA 260 :ERR T0547 356 :PKLIDE 1rcqA 265 :IGVVAM T0547 362 :LYDLYKSIKPSNALEYL 1rcqA 272 :YADGYPRHAADGTLVFI T0547 541 :NEKGYEVEGII 1rcqA 289 :DGKPGRLVGRV T0547 552 :EAQSILDTLEDLDYDIHAIMDILNERISNSKLVND 1rcqA 301 :MDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQ T0547 589 :KKHILGELYLFLN 1rcqA 336 :FGSIPYQLLCNLK T0547 603 :NGYLKSIGV 1rcqA 349 :RVPRVYSGA Number of specific fragments extracted= 26 number of extra gaps= 4 total=5871 Will force an alignment to be made, even if fragment is small Number of alignments=243 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)Q354 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N355 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 59 :IENIYGNFNKARKEF 1rcqA 10 :LQALRHNYRLAREAT T0547 80 :NAVYPLKVNQ 1rcqA 27 :RALAVIKADA T0547 90 :YPGFVKNL 1rcqA 41 :AVRCAEAL T0547 99 :KLGKD 1rcqA 49 :AAEAD T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 54 :GFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 144 :FIAAEMGHNITLTIEGLNELEAI 1rcqA 86 :ELELIVAHDFWCVVHCAWQLEAI T0547 169 :I 1rcqA 111 :A T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :R 1rcqA 124 :D T0547 197 :SGG 1rcqA 125 :SGM T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LL 1rcqA 149 :KV T0547 226 :QFTMIHFHLG 1rcqA 151 :AKIVMMSHFS T0547 236 :SQITEIHPLKKALNEAGNIYTELRKM 1rcqA 162 :ADELDCPRTEEQLAAFSAASQGLEGE T0547 269 :INLGGGLAVEYSQ 1rcqA 188 :ISLRNSPAVLGWP T0547 284 :N 1rcqA 201 :K T0547 288 :RNYTLREYANDV 1rcqA 202 :VPSDWVRPGILL T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1rcqA 214 :YGATPFERAHPLADRLRPVMTLESKVISVRDLP T0547 351 :LKK 1rcqA 260 :ERR T0547 356 :PKLIDE 1rcqA 265 :IGVVAM T0547 362 :LYDLYKSIKPSNALEYL 1rcqA 272 :YADGYPRHAADGTLVFI T0547 472 :PTRSASIWDITCD 1rcqA 289 :DGKPGRLVGRVSM Number of specific fragments extracted= 22 number of extra gaps= 4 total=5893 Will force an alignment to be made, even if fragment is small Number of alignments=244 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)I32 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)S188 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)S387 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)I388 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 1 :MMDYGIDI 1rcqA 1 :MRPARALI T0547 11 :NENFIIKNGKVCINYE 1rcqA 9 :DLQALRHNYRLAREAT T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQ 1rcqA 27 :RALAVIKADAYGHGAVRCAEALAA T0547 58 :QIE 1rcqA 51 :EAD T0547 117 :LLAMAYNNEGAPITVNGFKDRELIN 1rcqA 54 :GFAVACIEEGLELREAGIRQPILLL T0547 142 :IGFIAAEMGHNITLTIEGLNELEAI 1rcqA 84 :ASELELIVAHDFWCVVHCAWQLEAI T0547 169 :IA 1rcqA 111 :AS T0547 178 :PNIGLRVR 1rcqA 113 :LARPLNVW T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LL 1rcqA 149 :KV T0547 225 :EQFTMIHFHLGSQIT 1rcqA 152 :KIVMMSHFSRADELD T0547 241 :IHPLKKALNEAGNIYTEL 1rcqA 167 :CPRTEEQLAAFSAASQGL T0547 290 :YTLREYANDVVFILK 1rcqA 185 :EGEISLRNSPAVLGW T0547 315 :PDIFIESGRFVA 1rcqA 200 :PKVPSDWVRPGI T0547 327 :ANHAVLIAPVLELFSQ 1rcqA 223 :HPLADRLRPVMTLESK T0547 349 :LI 1rcqA 239 :VI T0547 365 :LYKSIKPSNALEYLHDSIDHLE 1rcqA 241 :SVRDLPAGEPVGYGARYSTERR T0547 389 :LTLFDLGYVDLQ 1rcqA 265 :IGVVAMGYADGY T0547 529 :LFTHPTEAIISINEKGYEVEGIIEAQSILDTLED 1rcqA 277 :PRHAADGTLVFIDGKPGRLVGRVSMDMLTVDLTD T0547 563 :LDYDIHAIMDILNERISNSKL 1rcqA 312 :PQAGLGSRVELWGPNVPVGAL T0547 586 :DKQKKHILGELYLFLN 1rcqA 333 :AAQFGSIPYQLLCNLK T0547 603 :NGYLKSIGV 1rcqA 349 :RVPRVYSGA Number of specific fragments extracted= 22 number of extra gaps= 4 total=5915 Will force an alignment to be made, even if fragment is small Number of alignments=245 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 T0547 106 :YGLEAGSKAELL 1rcqA 37 :YGHGAVRCAEAL T0547 118 :LAMAYNNEGAPITVNGFKDRELIN 1rcqA 55 :FAVACIEEGLELREAGIRQPILLL T0547 142 :IGFIAAEMGHNITLTIEGLNELEAI 1rcqA 84 :ASELELIVAHDFWCVVHCAWQLEAI T0547 169 :IA 1rcqA 111 :AS T0547 176 :PKPNIG 1rcqA 115 :RPLNVW Number of specific fragments extracted= 5 number of extra gaps= 1 total=5920 Will force an alignment to be made, even if fragment is small Number of alignments=246 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)K68 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 1 :M 1rcqA 1 :M T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1rcqA 2 :RPARALIDLQALRHNYRLAREAT T0547 70 :RKEFGYKGGFNAVYPLKV 1rcqA 27 :RALAVIKADAYGHGAVRC T0547 94 :VKNLVKLGK 1rcqA 45 :AEALAAEAD T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1rcqA 54 :GFAVACIEEGLELREAGIRQPILLLEGFFEA T0547 140 :INIGF 1rcqA 85 :SELEL T0547 146 :AAEMGHN 1rcqA 90 :IVAHDFW T0547 155 :LTIEGLNELEAI 1rcqA 97 :CVVHCAWQLEAI T0547 169 :IA 1rcqA 111 :AS T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLH 1rcqA 124 :DSG T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLK 1rcqA 149 :KVAKIVMMSHFSRADELDCPRTEEQLAAFSAASQGLEGEISLRNS T0547 268 :A 1rcqA 196 :V T0547 275 :LA 1rcqA 197 :LG T0547 279 :YSQFKNEKSRN 1rcqA 199 :WPKVPSDWVRP T0547 291 :TLREYANDVVFILKNIAEQK 1rcqA 210 :GILLYGATPFERAHPLADRL T0547 327 :ANHAVLIAPVLELFSQEY 1rcqA 230 :RPVMTLESKVISVRDLPA T0547 346 :ENKLI 1rcqA 248 :GEPVG T0547 363 :YDLYKSIKPS 1rcqA 253 :YGARYSTERR T0547 375 :LEYLHD 1rcqA 265 :IGVVAM T0547 381 :SIDHLESILTLFDLGYVD 1rcqA 272 :YADGYPRHAADGTLVFID T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 1rcqA 295 :LVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAA T0547 459 :NFPIMPLDRLDEEPTRSASIW 1rcqA 335 :QFGSIPYQLLCNLKRVPRVYS T0547 517 :G 1rcqA 356 :G Number of specific fragments extracted= 25 number of extra gaps= 4 total=5945 Will force an alignment to be made, even if fragment is small Number of alignments=247 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 Warning: unaligning (T0547)F513 because last residue in template chain is (1rcqA)A357 T0547 44 :KGPLLLRFPHLIQKQIENIYGN 1rcqA 2 :RPARALIDLQALRHNYRLAREA T0547 77 :G 1rcqA 24 :T T0547 80 :NAVYPLKVNQY 1rcqA 27 :RALAVIKADAY T0547 91 :PGFVKNLVK 1rcqA 42 :VRCAEALAA T0547 101 :GK 1rcqA 51 :EA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 141 :NIGF 1rcqA 86 :ELEL T0547 146 :AAEMGH 1rcqA 90 :IVAHDF T0547 153 :I 1rcqA 96 :W T0547 155 :LTIEGLNELEAI 1rcqA 97 :CVVHCAWQLEAI T0547 172 :ERFKPKPNIG 1rcqA 111 :ASLARPLNVW T0547 185 :RLH 1rcqA 124 :DSG T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LLE 1rcqA 149 :KVA T0547 227 :FTMIHFHLG 1rcqA 152 :KIVMMSHFS T0547 236 :SQITEIHPLKKALNEAGNI 1rcqA 162 :ADELDCPRTEEQLAAFSAA T0547 263 :AKNL 1rcqA 181 :SQGL T0547 267 :KAINLGGGLAVEY 1rcqA 186 :GEISLRNSPAVLG T0547 282 :FKNEKSRNYT 1rcqA 199 :WPKVPSDWVR T0547 306 :IAEQKKDL 1rcqA 210 :GILLYGAT T0547 315 :PD 1rcqA 218 :PF T0547 318 :FIESGRFVAA 1rcqA 228 :RLRPVMTLES T0547 328 :NHAVLIAPVLELFSQEY 1rcqA 246 :PAGEPVGYGARYSTERR T0547 348 :KLILKKQNPKLIDE 1rcqA 265 :IGVVAMGYADGYPR T0547 362 :LYDLYKSI 1rcqA 280 :AADGTLVF T0547 372 :SN 1rcqA 288 :ID T0547 379 :HDSIDHLESILTLFDLGYVD 1rcqA 290 :GKPGRLVGRVSMDMLTVDLT T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQ 1rcqA 311 :HPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLC T0547 467 :RLDEEPTRS 1rcqA 346 :NLKRVPRVY T0547 511 :LG 1rcqA 355 :SG Number of specific fragments extracted= 30 number of extra gaps= 4 total=5975 Will force an alignment to be made, even if fragment is small Number of alignments=248 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1rcqA 2 :RPARALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKVNQ 1rcqA 27 :RALAVIKADA T0547 90 :YPGFVKNLVKLG 1rcqA 41 :AVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 141 :NIGF 1rcqA 86 :ELEL T0547 146 :AAEMG 1rcqA 90 :IVAHD T0547 153 :ITLTIEGLNELEAI 1rcqA 95 :FWCVVHCAWQLEAI T0547 169 :I 1rcqA 111 :A T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :RLH 1rcqA 124 :DSG T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LLE 1rcqA 149 :KVA T0547 227 :FTMIHFHLG 1rcqA 152 :KIVMMSHFS T0547 236 :SQITEIHPLKKALNEAGNIYTEL 1rcqA 162 :ADELDCPRTEEQLAAFSAASQGL T0547 265 :NL 1rcqA 185 :EG T0547 268 :AINLGGGLAVEY 1rcqA 187 :EISLRNSPAVLG T0547 282 :FKNEKS 1rcqA 199 :WPKVPS T0547 291 :TL 1rcqA 205 :DW T0547 299 :VVFILKNIAEQKKDLEPDIFIESGRFVAA 1rcqA 209 :PGILLYGATPFERAHPLADRLRPVMTLES T0547 335 :PVLELFSQ 1rcqA 238 :KVISVRDL T0547 343 :EY 1rcqA 261 :RR T0547 348 :KLILKKQNPKLIDE 1rcqA 265 :IGVVAMGYADGYPR T0547 362 :LYDLYK 1rcqA 280 :AADGTL T0547 369 :IKPS 1rcqA 286 :VFID T0547 379 :HDSIDHLESILTLFDLGYVD 1rcqA 290 :GKPGRLVGRVSMDMLTVDLT T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1rcqA 311 :HPQAGLGSRVELWGPNVPVGALAAQFG T0547 426 :PADLLAIQDEVQERYLV 1rcqA 340 :PYQLLCNLKRVPRVYSG Number of specific fragments extracted= 27 number of extra gaps= 4 total=6002 Will force an alignment to be made, even if fragment is small Number of alignments=249 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 44 :KGPLLLRFPHLIQKQIENIYGN 1rcqA 2 :RPARALIDLQALRHNYRLAREA T0547 77 :G 1rcqA 24 :T T0547 80 :NAVYPLKVN 1rcqA 27 :RALAVIKAD T0547 89 :QYPGFVKNLVKLG 1rcqA 40 :GAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 141 :NIGF 1rcqA 86 :ELEL T0547 146 :AAEMGH 1rcqA 90 :IVAHDF T0547 153 :I 1rcqA 96 :W T0547 155 :LTIEGLNELEAI 1rcqA 97 :CVVHCAWQLEAI T0547 169 :IA 1rcqA 111 :AS T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLH 1rcqA 124 :DSG T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LLE 1rcqA 149 :KVA T0547 227 :FTMIHFHLG 1rcqA 152 :KIVMMSHFS T0547 236 :SQITEIHPLKKALNEAGNIYTE 1rcqA 162 :ADELDCPRTEEQLAAFSAASQG T0547 265 :NLKAINLGGGLAVEY 1rcqA 184 :LEGEISLRNSPAVLG T0547 282 :FKNEK 1rcqA 199 :WPKVP T0547 288 :RNY 1rcqA 204 :SDW T0547 308 :EQKKDLEPDI 1rcqA 212 :LLYGATPFER T0547 318 :FIESGRFVAA 1rcqA 228 :RLRPVMTLES T0547 335 :PVLELFSQ 1rcqA 238 :KVISVRDL T0547 343 :EYA 1rcqA 260 :ERR T0547 348 :KLILKKQNPKLIDE 1rcqA 265 :IGVVAMGYADGYPR T0547 362 :LYDLYKSI 1rcqA 280 :AADGTLVF T0547 371 :PS 1rcqA 288 :ID T0547 379 :HDSIDHLESILTLFDLGYVD 1rcqA 290 :GKPGRLVGRVSMDMLTVDLT T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 1rcqA 311 :HPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCNL T0547 505 :EKENYF 1rcqA 348 :KRVPRV T0547 608 :SIGV 1rcqA 354 :YSGA Number of specific fragments extracted= 30 number of extra gaps= 4 total=6032 Will force an alignment to be made, even if fragment is small Number of alignments=250 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1rcqA 2 :RPARALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKVNQ 1rcqA 27 :RALAVIKADA T0547 90 :YPGFVKNLVKLG 1rcqA 41 :AVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDREL 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEASE T0547 142 :IGF 1rcqA 87 :LEL T0547 146 :AAEMG 1rcqA 90 :IVAHD T0547 153 :ITLTIEGLNELEAI 1rcqA 95 :FWCVVHCAWQLEAI T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :RLH 1rcqA 124 :DSG T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LL 1rcqA 149 :KV T0547 226 :QFTMIHFHLG 1rcqA 151 :AKIVMMSHFS T0547 236 :SQITEIHPLKKALNEAGNIY 1rcqA 162 :ADELDCPRTEEQLAAFSAAS T0547 261 :MGA 1rcqA 182 :QGL T0547 265 :NLK 1rcqA 185 :EGE T0547 269 :INLGGGLAVEY 1rcqA 188 :ISLRNSPAVLG T0547 282 :FKNEK 1rcqA 199 :WPKVP T0547 315 :PDI 1rcqA 204 :SDW T0547 319 :IESGRFVAA 1rcqA 207 :VRPGILLYG T0547 328 :NHAVLIAPVLELFSQ 1rcqA 231 :PVMTLESKVISVRDL T0547 343 :EY 1rcqA 261 :RR T0547 348 :KLILKKQNPKLIDE 1rcqA 265 :IGVVAMGYADGYPR T0547 362 :LYDLYK 1rcqA 280 :AADGTL T0547 378 :LHDSIDHLESILTLFDLGYVD 1rcqA 289 :DGKPGRLVGRVSMDMLTVDLT T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQ 1rcqA 311 :HPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLC T0547 459 :NFPIMPL 1rcqA 346 :NLKRVPR T0547 607 :KSIGV 1rcqA 353 :VYSGA Number of specific fragments extracted= 27 number of extra gaps= 4 total=6059 Will force an alignment to be made, even if fragment is small Number of alignments=251 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1rcqA 2 :RPARALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKVN 1rcqA 27 :RALAVIKAD T0547 89 :QYPGFVKNLVKLG 1rcqA 40 :GAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEA T0547 140 :INIGF 1rcqA 85 :SELEL T0547 146 :AAEMG 1rcqA 90 :IVAHD T0547 153 :ITLTIEGLNELEAI 1rcqA 95 :FWCVVHCAWQLEAI T0547 169 :I 1rcqA 111 :A T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :RLH 1rcqA 124 :DSG T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LL 1rcqA 149 :KV T0547 226 :QFTMIHFHLG 1rcqA 151 :AKIVMMSHFS T0547 236 :SQITEIHPLKKALNEAGNIY 1rcqA 162 :ADELDCPRTEEQLAAFSAAS T0547 261 :MGA 1rcqA 182 :QGL T0547 266 :LKAINLGG 1rcqA 185 :EGEISLRN T0547 274 :GLA 1rcqA 203 :PSD T0547 280 :SQFKNEKSR 1rcqA 211 :ILLYGATPF T0547 310 :KKDLEPDIFIESGRFVA 1rcqA 220 :ERAHPLADRLRPVMTLE T0547 334 :APVLELFSQ 1rcqA 237 :SKVISVRDL T0547 343 :EYA 1rcqA 260 :ERR T0547 348 :KLILKKQNPKLIDE 1rcqA 265 :IGVVAMGYADGYPR T0547 362 :LYDLYK 1rcqA 280 :AADGTL T0547 378 :LHDSIDHLESILTLFDLGYVD 1rcqA 289 :DGKPGRLVGRVSMDMLTVDLT T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 1rcqA 311 :HPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCN T0547 468 :LDEEPTRSA 1rcqA 347 :LKRVPRVYS T0547 610 :GV 1rcqA 356 :GA Number of specific fragments extracted= 27 number of extra gaps= 4 total=6086 Will force an alignment to be made, even if fragment is small Number of alignments=252 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)K68 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 49 :LRFPHLIQKQIENIYGNF 1rcqA 7 :LIDLQALRHNYRLAREAT T0547 70 :RKEFGYKGGFNAVYPLKV 1rcqA 27 :RALAVIKADAYGHGAVRC T0547 94 :VKNLVKLGK 1rcqA 45 :AEALAAEAD T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1rcqA 54 :GFAVACIEEGLELREAGIRQPILLLEGFFEA T0547 140 :INIGF 1rcqA 85 :SELEL T0547 146 :AAEMGHN 1rcqA 90 :IVAHDFW T0547 155 :LTIEGLNELEAI 1rcqA 97 :CVVHCAWQLEAI T0547 169 :IA 1rcqA 111 :AS T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLH 1rcqA 124 :DSG T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LLEQFTMIHFHLGSQITEIHPLKKALN 1rcqA 149 :KVAKIVMMSHFSRADELDCPRTEEQLA Number of specific fragments extracted= 12 number of extra gaps= 3 total=6098 Will force an alignment to be made, even if fragment is small Number of alignments=253 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 44 :KGPLLLRFPHLIQKQIENIYGN 1rcqA 2 :RPARALIDLQALRHNYRLAREA T0547 77 :G 1rcqA 24 :T T0547 80 :NAVYPLKVNQY 1rcqA 27 :RALAVIKADAY T0547 91 :PGFVKNLVK 1rcqA 42 :VRCAEALAA T0547 101 :GK 1rcqA 51 :EA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 141 :NIGF 1rcqA 86 :ELEL T0547 146 :AAEMGH 1rcqA 90 :IVAHDF T0547 153 :I 1rcqA 96 :W T0547 155 :LTIEGLNELEAI 1rcqA 97 :CVVHCAWQLEAI T0547 172 :ERFKPKPNIG 1rcqA 111 :ASLARPLNVW T0547 185 :RLH 1rcqA 124 :DSG T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LLE 1rcqA 149 :KVA T0547 227 :FTMIHFHLG 1rcqA 152 :KIVMMSHFS T0547 236 :SQITEIHPLKKALNEAGNI 1rcqA 162 :ADELDCPRTEEQLAAFSAA T0547 263 :AKNL 1rcqA 181 :SQGL T0547 267 :KAINLGGGLAVEY 1rcqA 186 :GEISLRNSPAVLG T0547 282 :FKNEKSRNYT 1rcqA 199 :WPKVPSDWVR T0547 306 :IAEQKKDL 1rcqA 210 :GILLYGAT T0547 315 :PD 1rcqA 218 :PF T0547 318 :FIESGRFVAA 1rcqA 228 :RLRPVMTLES T0547 328 :NHAVLIAPVLELFSQEY 1rcqA 246 :PAGEPVGYGARYSTERR T0547 348 :KLILKKQNPKLIDE 1rcqA 265 :IGVVAMGYADGYPR T0547 362 :LYDLYKSI 1rcqA 280 :AADGTLVF T0547 372 :SN 1rcqA 288 :ID T0547 379 :HDSIDHLESILTLFDLGYVD 1rcqA 290 :GKPGRLVGRVSMDMLTVDLT T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQ 1rcqA 311 :HPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLC T0547 467 :RLDEEPTR 1rcqA 346 :NLKRVPRV Number of specific fragments extracted= 29 number of extra gaps= 4 total=6127 Will force an alignment to be made, even if fragment is small Number of alignments=254 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1rcqA 2 :RPARALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKVNQ 1rcqA 27 :RALAVIKADA T0547 90 :YPGFVKNLVKLG 1rcqA 41 :AVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 141 :NIGF 1rcqA 86 :ELEL T0547 146 :AAEMG 1rcqA 90 :IVAHD T0547 153 :ITLTIEGLNELEAI 1rcqA 95 :FWCVVHCAWQLEAI T0547 169 :I 1rcqA 111 :A T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :RLH 1rcqA 124 :DSG T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LLE 1rcqA 149 :KVA T0547 227 :FTMIHFHLG 1rcqA 152 :KIVMMSHFS T0547 236 :SQITEIHPLKKALNEAGNIYTEL 1rcqA 162 :ADELDCPRTEEQLAAFSAASQGL T0547 265 :NL 1rcqA 185 :EG T0547 268 :AINLGGGLAVEY 1rcqA 187 :EISLRNSPAVLG T0547 282 :FKNEKS 1rcqA 199 :WPKVPS T0547 291 :TL 1rcqA 205 :DW T0547 299 :VVFILKNIAEQKKDLEPDIFIESGRFVAA 1rcqA 209 :PGILLYGATPFERAHPLADRLRPVMTLES T0547 335 :PVLELFSQ 1rcqA 238 :KVISVRDL T0547 343 :EY 1rcqA 261 :RR T0547 348 :KLILKKQNPKLIDE 1rcqA 265 :IGVVAMGYADGYPR T0547 362 :LYDLYK 1rcqA 280 :AADGTL T0547 369 :IKPS 1rcqA 286 :VFID T0547 379 :HDSIDHLESILTLFDLGYVD 1rcqA 290 :GKPGRLVGRVSMDMLTVDLT T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1rcqA 311 :HPQAGLGSRVELWGPNVPVGALAAQFG T0547 426 :PADLLAIQDEVQE 1rcqA 340 :PYQLLCNLKRVPR Number of specific fragments extracted= 27 number of extra gaps= 4 total=6154 Will force an alignment to be made, even if fragment is small Number of alignments=255 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 44 :KGPLLLRFPHLIQKQIENIYGN 1rcqA 2 :RPARALIDLQALRHNYRLAREA T0547 77 :G 1rcqA 24 :T T0547 80 :NAVYPLKVN 1rcqA 27 :RALAVIKAD T0547 89 :QYPGFVKNLVKLG 1rcqA 40 :GAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 141 :NIGF 1rcqA 86 :ELEL T0547 146 :AAEMGH 1rcqA 90 :IVAHDF T0547 153 :I 1rcqA 96 :W T0547 155 :LTIEGLNELEAI 1rcqA 97 :CVVHCAWQLEAI T0547 169 :IA 1rcqA 111 :AS T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLH 1rcqA 124 :DSG T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LLE 1rcqA 149 :KVA T0547 227 :FTMIHFHLG 1rcqA 152 :KIVMMSHFS T0547 236 :SQITEIHPLKKALNEAGNIYTE 1rcqA 162 :ADELDCPRTEEQLAAFSAASQG T0547 265 :NLKAINLGGGLAVEY 1rcqA 184 :LEGEISLRNSPAVLG T0547 282 :FKNEK 1rcqA 199 :WPKVP T0547 288 :RNY 1rcqA 204 :SDW T0547 308 :EQKKDLEPDI 1rcqA 212 :LLYGATPFER T0547 318 :FIESGRFVAA 1rcqA 228 :RLRPVMTLES T0547 335 :PVLELFSQ 1rcqA 238 :KVISVRDL T0547 343 :EYA 1rcqA 260 :ERR T0547 348 :KLILKKQNPKLIDE 1rcqA 265 :IGVVAMGYADGYPR T0547 362 :LYDLYKSI 1rcqA 280 :AADGTLVF T0547 371 :PS 1rcqA 288 :ID T0547 379 :HDSIDHLESILTLFDLGYVD 1rcqA 290 :GKPGRLVGRVSMDMLTVDLT T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1rcqA 311 :HPQAGLGSRVELWGPNVPVGALAAQFGSIP T0547 429 :LLAIQDEVQ 1rcqA 343 :LLCNLKRVP Number of specific fragments extracted= 29 number of extra gaps= 4 total=6183 Will force an alignment to be made, even if fragment is small Number of alignments=256 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1rcqA 2 :RPARALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKVNQ 1rcqA 27 :RALAVIKADA T0547 90 :YPGFVKNLVKLG 1rcqA 41 :AVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDREL 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEASE T0547 142 :IGF 1rcqA 87 :LEL T0547 146 :AAEMG 1rcqA 90 :IVAHD T0547 153 :ITLTIEGLNELEAI 1rcqA 95 :FWCVVHCAWQLEAI T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :RLH 1rcqA 124 :DSG T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LL 1rcqA 149 :KV T0547 226 :QFTMIHFHLG 1rcqA 151 :AKIVMMSHFS T0547 236 :SQITEIHPLKKALNEAGNIY 1rcqA 162 :ADELDCPRTEEQLAAFSAAS T0547 261 :MGA 1rcqA 182 :QGL T0547 265 :NLK 1rcqA 185 :EGE T0547 269 :INLGGGLAVEY 1rcqA 188 :ISLRNSPAVLG T0547 282 :FKNEK 1rcqA 199 :WPKVP T0547 315 :PDI 1rcqA 204 :SDW T0547 319 :IESGRFVAA 1rcqA 207 :VRPGILLYG T0547 328 :NHAVLIAPVLELFSQ 1rcqA 231 :PVMTLESKVISVRDL T0547 343 :EY 1rcqA 261 :RR T0547 348 :KLILKKQNPKLIDE 1rcqA 265 :IGVVAMGYADGYPR T0547 362 :LYDLYK 1rcqA 280 :AADGTL T0547 378 :LHDSIDHLESILTLFDLGYVD 1rcqA 289 :DGKPGRLVGRVSMDMLTVDLT T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQ 1rcqA 311 :HPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLC Number of specific fragments extracted= 25 number of extra gaps= 4 total=6208 Will force an alignment to be made, even if fragment is small Number of alignments=257 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1rcqA 2 :RPARALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKVN 1rcqA 27 :RALAVIKAD T0547 89 :QYPGFVKNLVKLG 1rcqA 40 :GAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEA T0547 140 :INIGF 1rcqA 85 :SELEL T0547 146 :AAEMG 1rcqA 90 :IVAHD T0547 153 :ITLTIEGLNELEAI 1rcqA 95 :FWCVVHCAWQLEAI T0547 169 :I 1rcqA 111 :A T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :RLH 1rcqA 124 :DSG T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LL 1rcqA 149 :KV T0547 226 :QFTMIHFHLG 1rcqA 151 :AKIVMMSHFS T0547 236 :SQITEIHPLKKALNEAGNIY 1rcqA 162 :ADELDCPRTEEQLAAFSAAS T0547 261 :MGA 1rcqA 182 :QGL T0547 266 :LKAINLGG 1rcqA 185 :EGEISLRN T0547 274 :GLA 1rcqA 203 :PSD T0547 280 :SQFKNEKSR 1rcqA 211 :ILLYGATPF T0547 310 :KKDLEPDIFIESGRFVA 1rcqA 220 :ERAHPLADRLRPVMTLE T0547 334 :APVLELFSQ 1rcqA 237 :SKVISVRDL T0547 343 :EYA 1rcqA 260 :ERR T0547 348 :KLILKKQNPKLIDE 1rcqA 265 :IGVVAMGYADGYPR T0547 362 :LYDLYK 1rcqA 280 :AADGTL T0547 378 :LHDSIDHLESILTLFDLGYVD 1rcqA 289 :DGKPGRLVGRVSMDMLTVDLT T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 1rcqA 311 :HPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCN Number of specific fragments extracted= 25 number of extra gaps= 4 total=6233 Will force an alignment to be made, even if fragment is small Number of alignments=258 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 Warning: unaligning (T0547)Y440 because last residue in template chain is (1rcqA)A357 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1rcqA 2 :RPARALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1rcqA 27 :RALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQPILLLEGFFEASELELIV T0547 150 :GHNITLTIEGLNELEAI 1rcqA 92 :AHDFWCVVHCAWQLEAI T0547 169 :IAKE 1rcqA 111 :ASLA T0547 176 :PKPNIG 1rcqA 115 :RPLNVW T0547 187 :HSAGV 1rcqA 124 :DSGMH T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 223 :LLEQFT 1rcqA 149 :KVAKIV T0547 230 :IHFHLG 1rcqA 155 :MMSHFS T0547 236 :SQITEIHPLKKALNEAGNIYTELR 1rcqA 162 :ADELDCPRTEEQLAAFSAASQGLE T0547 260 :KMGAKNLKAI 1rcqA 187 :EISLRNSPAV T0547 275 :LAVEYSQFKNEKS 1rcqA 197 :LGWPKVPSDWVRP T0547 291 :TLREYANDVVFILKNIAEQKK 1rcqA 210 :GILLYGATPFERAHPLADRLR T0547 328 :NHAVLIAPVLELFSQEYAE 1rcqA 231 :PVMTLESKVISVRDLPAGE T0547 360 :DELYDLYKSIKPS 1rcqA 250 :PVGYGARYSTERR T0547 375 :LE 1rcqA 265 :IG T0547 377 :YLHDSIDHL 1rcqA 291 :KPGRLVGRV T0547 388 :ILTLFDLGYVDLQDRSNAEILTHLI 1rcqA 300 :SMDMLTVDLTDHPQAGLGSRVELWG T0547 413 :TKKAILLLGD 1rcqA 329 :VGALAAQFGS T0547 423 :KQNPADLLAIQDEVQER 1rcqA 340 :PYQLLCNLKRVPRVYSG Number of specific fragments extracted= 20 number of extra gaps= 4 total=6253 Will force an alignment to be made, even if fragment is small Number of alignments=259 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)K44 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 Warning: unaligning (T0547)F447 because last residue in template chain is (1rcqA)A357 T0547 45 :GP 1rcqA 2 :RP T0547 47 :LLLRFPHLIQKQIENIYG 1rcqA 5 :RALIDLQALRHNYRLARE T0547 77 :G 1rcqA 23 :A T0547 80 :NAVYPLKVNQY 1rcqA 27 :RALAVIKADAY T0547 91 :PGFVKNL 1rcqA 42 :VRCAEAL T0547 99 :KLGK 1rcqA 49 :AAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEASELELIV T0547 148 :EMGH 1rcqA 92 :AHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :R 1rcqA 124 :D T0547 188 :SAGV 1rcqA 125 :SGMH T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 223 :LLEQFT 1rcqA 149 :KVAKIV T0547 230 :IHFHLG 1rcqA 155 :MMSHFS T0547 236 :SQITEIHPLKKALNEAGNI 1rcqA 162 :ADELDCPRTEEQLAAFSAA T0547 262 :GA 1rcqA 183 :GL T0547 266 :LKAINLGGGLAVEY 1rcqA 185 :EGEISLRNSPAVLG T0547 280 :SQFKNEKSR 1rcqA 200 :PKVPSDWVR T0547 292 :L 1rcqA 209 :P T0547 306 :IAEQKK 1rcqA 210 :GILLYG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 1rcqA 216 :ATPFERAHPLADRLRPVMTLESKVISVRDLP T0547 344 :YA 1rcqA 261 :RR T0547 348 :KLILKK 1rcqA 265 :IGVVAM T0547 363 :YDLYKSIKPSNALE 1rcqA 272 :YADGYPRHAADGTL T0547 377 :YLHDSIDHLE 1rcqA 291 :KPGRLVGRVS T0547 389 :LTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADL 1rcqA 301 :MDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPY T0547 432 :IQDEVQERYLVNFSL 1rcqA 342 :QLLCNLKRVPRVYSG Number of specific fragments extracted= 28 number of extra gaps= 4 total=6281 Will force an alignment to be made, even if fragment is small Number of alignments=260 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)K44 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 Warning: unaligning (T0547)E457 because last residue in template chain is (1rcqA)A357 T0547 45 :GPLLL 1rcqA 2 :RPARA T0547 50 :RFPHLIQKQIENIYGNF 1rcqA 8 :IDLQALRHNYRLAREAT T0547 80 :NAVYPLKVNQY 1rcqA 27 :RALAVIKADAY T0547 91 :PGFVKNLVKLGK 1rcqA 42 :VRCAEALAAEAD T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1rcqA 54 :GFAVACIEEGLELREAGIRQPILLLEGFFEASELELIV T0547 150 :GHNITLTIEGLNELEAI 1rcqA 92 :AHDFWCVVHCAWQLEAI T0547 169 :I 1rcqA 111 :A T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :RLH 1rcqA 124 :DSG T0547 190 :GV 1rcqA 127 :MH T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 223 :LLEQFT 1rcqA 149 :KVAKIV T0547 230 :IHFHLG 1rcqA 155 :MMSHFS T0547 236 :SQITEIHPLKKALNEAGNIYTEL 1rcqA 162 :ADELDCPRTEEQLAAFSAASQGL T0547 264 :K 1rcqA 185 :E T0547 267 :KAINLGGGLAVEY 1rcqA 186 :GEISLRNSPAVLG T0547 288 :RNYTL 1rcqA 200 :PKVPS T0547 316 :DIFI 1rcqA 205 :DWVR T0547 320 :ESGRFVAANHAVLIAPVLELFSQE 1rcqA 223 :HPLADRLRPVMTLESKVISVRDLP T0547 344 :YA 1rcqA 261 :RR T0547 348 :KLILKK 1rcqA 265 :IGVVAM T0547 354 :QNPKLIDEL 1rcqA 272 :YADGYPRHA T0547 373 :NALE 1rcqA 282 :DGTL T0547 377 :YLHDSIDHLE 1rcqA 291 :KPGRLVGRVS T0547 389 :LTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADL 1rcqA 301 :MDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPY T0547 442 :VNFSLFQSMPDFWGL 1rcqA 342 :QLLCNLKRVPRVYSG Number of specific fragments extracted= 26 number of extra gaps= 4 total=6307 Will force an alignment to be made, even if fragment is small Number of alignments=261 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)K44 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 45 :GPL 1rcqA 2 :RPA T0547 48 :LLRFPHLIQKQIENIYGNF 1rcqA 6 :ALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKVNQ 1rcqA 27 :RALAVIKADA T0547 90 :YPGFVKNLVK 1rcqA 41 :AVRCAEALAA T0547 101 :GK 1rcqA 51 :EA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEASELELIV T0547 148 :EMGH 1rcqA 92 :AHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 169 :I 1rcqA 111 :A T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :RLHS 1rcqA 124 :DSGM T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LLEQFT 1rcqA 149 :KVAKIV T0547 230 :IHFHLGS 1rcqA 155 :MMSHFSR T0547 237 :QITEIHPLKKALNEAGNIYTE 1rcqA 163 :DELDCPRTEEQLAAFSAASQG T0547 263 :A 1rcqA 184 :L T0547 266 :LKAINLGGGLAVEY 1rcqA 185 :EGEISLRNSPAVLG T0547 280 :SQFKNEK 1rcqA 202 :VPSDWVR T0547 291 :TLR 1rcqA 209 :PGI T0547 308 :EQKK 1rcqA 212 :LLYG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 1rcqA 216 :ATPFERAHPLADRLRPVMTLESKVISVRDLP T0547 344 :YA 1rcqA 261 :RR T0547 348 :KLILKK 1rcqA 265 :IGVVAM T0547 354 :QNPKLIDEL 1rcqA 272 :YADGYPRHA T0547 372 :SNALE 1rcqA 281 :ADGTL T0547 377 :YLHDSIDHLE 1rcqA 291 :KPGRLVGRVS T0547 389 :LTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADL 1rcqA 301 :MDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPY T0547 432 :IQDEVQERYLVNF 1rcqA 342 :QLLCNLKRVPRVY T0547 609 :IGV 1rcqA 355 :SGA Number of specific fragments extracted= 29 number of extra gaps= 4 total=6336 Will force an alignment to be made, even if fragment is small Number of alignments=262 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)K44 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 Warning: unaligning (T0547)D503 because last residue in template chain is (1rcqA)A357 T0547 45 :GPL 1rcqA 2 :RPA T0547 48 :LLRFPHLIQKQIENIYGNF 1rcqA 6 :ALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKV 1rcqA 27 :RALAVIKA T0547 88 :NQYPGFVKNLVKLG 1rcqA 39 :HGAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEASELELIV T0547 148 :EMG 1rcqA 92 :AHD T0547 153 :ITLTIEGLNELEAI 1rcqA 95 :FWCVVHCAWQLEAI T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLHS 1rcqA 124 :DSGM T0547 191 :V 1rcqA 128 :H T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 223 :LLEQFT 1rcqA 149 :KVAKIV T0547 230 :IHFHLG 1rcqA 155 :MMSHFS T0547 236 :SQITEIHPLKKALNEAGNIY 1rcqA 162 :ADELDCPRTEEQLAAFSAAS T0547 262 :GAK 1rcqA 183 :GLE T0547 269 :INLGG 1rcqA 188 :ISLRN T0547 292 :LREYA 1rcqA 193 :SPAVL T0547 306 :IAEQ 1rcqA 198 :GWPK T0547 313 :LEPDIFI 1rcqA 202 :VPSDWVR T0547 320 :ESGRFVAANHAVLIAPVLELFSQE 1rcqA 223 :HPLADRLRPVMTLESKVISVRDLP T0547 344 :YA 1rcqA 261 :RR T0547 348 :KLILKK 1rcqA 265 :IGVVAM T0547 354 :QNPKLIDE 1rcqA 272 :YADGYPRH T0547 371 :PSNALE 1rcqA 280 :AADGTL T0547 377 :YLHDSIDHLESILTLFDLGY 1rcqA 291 :KPGRLVGRVSMDMLTVDLTD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADL 1rcqA 311 :HPQAGLGSRVELWGPNVPVGALAAQFGSIPY T0547 431 :AIQ 1rcqA 342 :QLL T0547 458 :QNFPIMPLD 1rcqA 345 :CNLKRVPRV T0547 500 :HDV 1rcqA 354 :YSG Number of specific fragments extracted= 29 number of extra gaps= 4 total=6365 Will force an alignment to be made, even if fragment is small Number of alignments=263 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)K44 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 Warning: unaligning (T0547)D503 because last residue in template chain is (1rcqA)A357 T0547 45 :GP 1rcqA 2 :RP T0547 47 :LLLRFPHLIQKQIENIYGNF 1rcqA 5 :RALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKVNQY 1rcqA 27 :RALAVIKADAY T0547 91 :PGFVK 1rcqA 42 :VRCAE T0547 97 :LVKLGK 1rcqA 47 :ALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEASELELIV T0547 148 :EMG 1rcqA 92 :AHD T0547 153 :ITLTIEGLNELEAI 1rcqA 95 :FWCVVHCAWQLEAI T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 187 :HSAGV 1rcqA 124 :DSGMH T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 223 :LLEQFT 1rcqA 149 :KVAKIV T0547 230 :IHFHLGS 1rcqA 155 :MMSHFSR T0547 237 :QITEIHPLKKALNEAGNIY 1rcqA 163 :DELDCPRTEEQLAAFSAAS T0547 261 :MGA 1rcqA 182 :QGL T0547 266 :LKAINLGG 1rcqA 185 :EGEISLRN T0547 276 :AVEYSQFKNEK 1rcqA 203 :PSDWVRPGILL T0547 310 :KK 1rcqA 214 :YG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 1rcqA 216 :ATPFERAHPLADRLRPVMTLESKVISVRDLP T0547 344 :YA 1rcqA 261 :RR T0547 348 :KLILKK 1rcqA 265 :IGVVAM T0547 354 :QNPK 1rcqA 272 :YADG T0547 367 :KSIKPSNALE 1rcqA 276 :YPRHAADGTL T0547 377 :YLHDSIDHLE 1rcqA 291 :KPGRLVGRVS T0547 389 :LTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 1rcqA 301 :MDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCNL T0547 457 :EQNFPIM 1rcqA 348 :KRVPRVY T0547 501 :DV 1rcqA 355 :SG Number of specific fragments extracted= 27 number of extra gaps= 4 total=6392 Will force an alignment to be made, even if fragment is small Number of alignments=264 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 49 :LRFPHLIQKQIENIYGNF 1rcqA 7 :LIDLQALRHNYRLAREAT T0547 80 :NAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1rcqA 27 :RALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQPILLLEGFFEASELELIV T0547 150 :GHNITLTIEGLNELEAI 1rcqA 92 :AHDFWCVVHCAWQLEAI T0547 169 :IAKE 1rcqA 111 :ASLA T0547 176 :PKPNIG 1rcqA 115 :RPLNVW T0547 187 :HSAGV 1rcqA 124 :DSGMH T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 223 :LLEQFT 1rcqA 149 :KVAKIV T0547 230 :IHFHLG 1rcqA 155 :MMSHFS T0547 236 :SQITEIHPLKKALNEAGNIYTELR 1rcqA 162 :ADELDCPRTEEQLAAFSAASQGLE T0547 260 :KMGAKNLKAI 1rcqA 187 :EISLRNSPAV T0547 275 :LAVEYSQFKNEKS 1rcqA 197 :LGWPKVPSDWVRP T0547 291 :TLREYANDVVFILKNIAEQKK 1rcqA 210 :GILLYGATPFERAHPLADRLR T0547 328 :NHAVLIAPVLELFSQEYAE 1rcqA 231 :PVMTLESKVISVRDLPAGE T0547 360 :DELYDLYKSIKPS 1rcqA 250 :PVGYGARYSTERR T0547 375 :LE 1rcqA 265 :IG T0547 377 :YLHDSIDHL 1rcqA 291 :KPGRLVGRV T0547 388 :ILTLFDLGYVDLQDRSNAEILTHLIT 1rcqA 300 :SMDMLTVDLTDHPQAGLGSRVELWGP Number of specific fragments extracted= 18 number of extra gaps= 4 total=6410 Will force an alignment to be made, even if fragment is small Number of alignments=265 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 45 :GP 1rcqA 2 :RP T0547 47 :LLLRFPHLIQKQIENIYG 1rcqA 5 :RALIDLQALRHNYRLARE T0547 77 :G 1rcqA 23 :A T0547 80 :NAVYPLKVNQY 1rcqA 27 :RALAVIKADAY T0547 91 :PGFVKNL 1rcqA 42 :VRCAEAL T0547 99 :KLGK 1rcqA 49 :AAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEASELELIV T0547 148 :EMGH 1rcqA 92 :AHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :R 1rcqA 124 :D T0547 188 :SAGV 1rcqA 125 :SGMH T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 223 :LLEQFT 1rcqA 149 :KVAKIV T0547 230 :IHFHLG 1rcqA 155 :MMSHFS T0547 236 :SQITEIHPLKKALNEAGNI 1rcqA 162 :ADELDCPRTEEQLAAFSAA T0547 262 :GA 1rcqA 183 :GL T0547 266 :LKAINLGGGLAVEY 1rcqA 185 :EGEISLRNSPAVLG T0547 280 :SQFKNEKSR 1rcqA 200 :PKVPSDWVR T0547 292 :L 1rcqA 209 :P T0547 306 :IAEQKK 1rcqA 210 :GILLYG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 1rcqA 216 :ATPFERAHPLADRLRPVMTLESKVISVRDLP T0547 344 :YA 1rcqA 261 :RR T0547 348 :KLILKK 1rcqA 265 :IGVVAM T0547 363 :YDLYKSIKPSNALE 1rcqA 272 :YADGYPRHAADGTL T0547 377 :YLHDSIDHLE 1rcqA 291 :KPGRLVGRVS T0547 389 :LTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADL 1rcqA 301 :MDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPY T0547 432 :IQDEVQERYLVN 1rcqA 342 :QLLCNLKRVPRV Number of specific fragments extracted= 28 number of extra gaps= 4 total=6438 Will force an alignment to be made, even if fragment is small Number of alignments=266 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)K44 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 45 :GPLLL 1rcqA 2 :RPARA T0547 50 :RFPHLIQKQIENIYGNF 1rcqA 8 :IDLQALRHNYRLAREAT T0547 80 :NAVYPLKVNQY 1rcqA 27 :RALAVIKADAY T0547 91 :PGFVKNLVKLGK 1rcqA 42 :VRCAEALAAEAD T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1rcqA 54 :GFAVACIEEGLELREAGIRQPILLLEGFFEASELELIV T0547 150 :GHNITLTIEGLNELEAI 1rcqA 92 :AHDFWCVVHCAWQLEAI T0547 169 :I 1rcqA 111 :A T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :RLH 1rcqA 124 :DSG T0547 190 :GV 1rcqA 127 :MH T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 223 :LLEQFT 1rcqA 149 :KVAKIV T0547 230 :IHFHLG 1rcqA 155 :MMSHFS T0547 236 :SQITEIHPLKKALNEAGNIYTEL 1rcqA 162 :ADELDCPRTEEQLAAFSAASQGL T0547 264 :K 1rcqA 185 :E T0547 267 :KAINLGGGLAVEY 1rcqA 186 :GEISLRNSPAVLG T0547 288 :RNYTL 1rcqA 200 :PKVPS T0547 316 :DIFI 1rcqA 205 :DWVR T0547 320 :ESGRFVAANHAVLIAPVLELFSQE 1rcqA 223 :HPLADRLRPVMTLESKVISVRDLP T0547 344 :YA 1rcqA 261 :RR T0547 348 :KLILKK 1rcqA 265 :IGVVAM T0547 354 :QNPKLIDEL 1rcqA 272 :YADGYPRHA T0547 373 :NALE 1rcqA 282 :DGTL T0547 377 :YLHDSIDHLE 1rcqA 291 :KPGRLVGRVS T0547 389 :LTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADL 1rcqA 301 :MDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPY T0547 431 :AIQDEV 1rcqA 342 :QLLCNL Number of specific fragments extracted= 26 number of extra gaps= 4 total=6464 Will force an alignment to be made, even if fragment is small Number of alignments=267 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)K44 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 45 :GPL 1rcqA 2 :RPA T0547 48 :LLRFPHLIQKQIENIYGNF 1rcqA 6 :ALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKVNQ 1rcqA 27 :RALAVIKADA T0547 90 :YPGFVKNLVK 1rcqA 41 :AVRCAEALAA T0547 101 :GK 1rcqA 51 :EA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEASELELIV T0547 148 :EMGH 1rcqA 92 :AHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 169 :I 1rcqA 111 :A T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :RLHS 1rcqA 124 :DSGM T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 223 :LLEQFT 1rcqA 149 :KVAKIV T0547 230 :IHFHLGS 1rcqA 155 :MMSHFSR T0547 237 :QITEIHPLKKALNEAGNIYTE 1rcqA 163 :DELDCPRTEEQLAAFSAASQG T0547 263 :A 1rcqA 184 :L T0547 266 :LKAINLGGGLAVEY 1rcqA 185 :EGEISLRNSPAVLG T0547 280 :SQFKNEK 1rcqA 202 :VPSDWVR T0547 291 :TLR 1rcqA 209 :PGI T0547 308 :EQKK 1rcqA 212 :LLYG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 1rcqA 216 :ATPFERAHPLADRLRPVMTLESKVISVRDLP T0547 344 :YA 1rcqA 261 :RR T0547 348 :KLILKK 1rcqA 265 :IGVVAM T0547 354 :QNPKLIDEL 1rcqA 272 :YADGYPRHA T0547 372 :SNALE 1rcqA 281 :ADGTL T0547 377 :YLHDSIDHLE 1rcqA 291 :KPGRLVGRVS T0547 389 :LTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADL 1rcqA 301 :MDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPY T0547 432 :IQDEVQERYLVN 1rcqA 342 :QLLCNLKRVPRV Number of specific fragments extracted= 28 number of extra gaps= 4 total=6492 Will force an alignment to be made, even if fragment is small Number of alignments=268 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)K44 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 45 :GPL 1rcqA 2 :RPA T0547 48 :LLRFPHLIQKQIENIYGNF 1rcqA 6 :ALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKV 1rcqA 27 :RALAVIKA T0547 88 :NQYPGFVKNLVKLG 1rcqA 39 :HGAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEASELELIV T0547 148 :EMG 1rcqA 92 :AHD T0547 153 :ITLTIEGLNELEAI 1rcqA 95 :FWCVVHCAWQLEAI T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLHS 1rcqA 124 :DSGM T0547 191 :V 1rcqA 128 :H T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 223 :LLEQFT 1rcqA 149 :KVAKIV T0547 230 :IHFHLG 1rcqA 155 :MMSHFS T0547 236 :SQITEIHPLKKALNEAGNIY 1rcqA 162 :ADELDCPRTEEQLAAFSAAS T0547 262 :GAK 1rcqA 183 :GLE T0547 269 :INLGG 1rcqA 188 :ISLRN T0547 292 :LREYA 1rcqA 193 :SPAVL T0547 306 :IAEQ 1rcqA 198 :GWPK T0547 313 :LEPDIFI 1rcqA 202 :VPSDWVR T0547 320 :ESGRFVAANHAVLIAPVLELFSQE 1rcqA 223 :HPLADRLRPVMTLESKVISVRDLP T0547 344 :YA 1rcqA 261 :RR T0547 348 :KLILKK 1rcqA 265 :IGVVAM T0547 354 :QNPKLIDE 1rcqA 272 :YADGYPRH T0547 371 :PSNALE 1rcqA 280 :AADGTL T0547 377 :YLHDSIDHLESILTLFDLGY 1rcqA 291 :KPGRLVGRVSMDMLTVDLTD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1rcqA 311 :HPQAGLGSRVELWGPNVPVGALAAQFGSIP T0547 557 :LDTLED 1rcqA 341 :YQLLCN Number of specific fragments extracted= 27 number of extra gaps= 4 total=6519 Will force an alignment to be made, even if fragment is small Number of alignments=269 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)K44 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 45 :GP 1rcqA 2 :RP T0547 47 :LLLRFPHLIQKQIENIYGNF 1rcqA 5 :RALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKVNQY 1rcqA 27 :RALAVIKADAY T0547 91 :PGFVK 1rcqA 42 :VRCAE T0547 97 :LVKLGK 1rcqA 47 :ALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEASELELIV T0547 148 :EMG 1rcqA 92 :AHD T0547 153 :ITLTIEGLNELEAI 1rcqA 95 :FWCVVHCAWQLEAI T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 187 :HSAGV 1rcqA 124 :DSGMH T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 223 :LLEQFT 1rcqA 149 :KVAKIV T0547 230 :IHFHLGS 1rcqA 155 :MMSHFSR T0547 237 :QITEIHPLKKALNEAGNIY 1rcqA 163 :DELDCPRTEEQLAAFSAAS T0547 261 :MGA 1rcqA 182 :QGL T0547 266 :LKAINLGG 1rcqA 185 :EGEISLRN T0547 276 :AVEYSQFKNEK 1rcqA 203 :PSDWVRPGILL T0547 310 :KK 1rcqA 214 :YG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 1rcqA 216 :ATPFERAHPLADRLRPVMTLESKVISVRDLP T0547 344 :YA 1rcqA 261 :RR T0547 348 :KLILKK 1rcqA 265 :IGVVAM T0547 354 :QNPK 1rcqA 272 :YADG T0547 367 :KSIKPSNALE 1rcqA 276 :YPRHAADGTL T0547 377 :YLHDSIDHLE 1rcqA 291 :KPGRLVGRVS T0547 389 :LTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 1rcqA 301 :MDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCN Number of specific fragments extracted= 25 number of extra gaps= 4 total=6544 Will force an alignment to be made, even if fragment is small Number of alignments=270 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)K68 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1rcqA 2 :RPARALIDLQALRHNYRLAREAT T0547 69 :ARK 1rcqA 27 :RAL T0547 73 :FGYKGGFNAVYP 1rcqA 30 :AVIKADAYGHGA T0547 91 :PGFVKNLVKLG 1rcqA 42 :VRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEA T0547 139 :LINIGFIAAEM 1rcqA 85 :SELELIVAHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 169 :IAKE 1rcqA 111 :ASLA T0547 176 :PKPNIG 1rcqA 115 :RPLNVW T0547 185 :RLHSAGV 1rcqA 124 :DSGMHRV T0547 205 :GLTSTELIEAVNLLKE 1rcqA 131 :GFFPEDFRAAHERLRA T0547 223 :LLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1rcqA 149 :KVAKIVMMSHFSRADELDCPRTEEQLAAFSAASQGLEGE T0547 277 :VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPD 1rcqA 188 :ISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLAD T0547 325 :VAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 1rcqA 228 :RLRPVMTLESKVISVRDLPAGEPVGYGARYSTERR T0547 381 :SIDHLES 1rcqA 292 :PGRLVGR T0547 390 :TLFDLGYVDLQDR 1rcqA 299 :VSMDMLTVDLTDH T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQ 1rcqA 314 :AGLGSRVELWGPNVPVGALAAQFGSIPYQLL T0547 531 :THPTEA 1rcqA 345 :CNLKRV T0547 605 :YLKSIGV 1rcqA 351 :PRVYSGA Number of specific fragments extracted= 19 number of extra gaps= 3 total=6563 Will force an alignment to be made, even if fragment is small Number of alignments=271 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)N24 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 25 :YEK 1rcqA 2 :RPA T0547 47 :LLLRFPHLIQKQIENIYGNF 1rcqA 5 :RALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKV 1rcqA 27 :RALAVIKA T0547 88 :NQYPGFVKNLVKLG 1rcqA 39 :HGAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 140 :INIGFIAAEM 1rcqA 86 :ELELIVAHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLHSA 1rcqA 124 :DSGMH T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 224 :LEQFTMIHFHLGSQI 1rcqA 149 :KVAKIVMMSHFSRAD T0547 239 :TEI 1rcqA 165 :LDC T0547 247 :ALNEAGNIYTELRKMGA 1rcqA 169 :RTEEQLAAFSAASQGLE T0547 307 :AEQKKD 1rcqA 224 :PLADRL T0547 327 :ANHAVLIAPVLELFSQ 1rcqA 230 :RPVMTLESKVISVRDL T0547 343 :EY 1rcqA 261 :RR T0547 347 :NKLILKK 1rcqA 265 :IGVVAMG T0547 366 :YKSIKPSNALEYLHD 1rcqA 272 :YADGYPRHAADGTLV T0547 381 :SIDHLESI 1rcqA 292 :PGRLVGRV T0547 391 :LFDLGYVDLQD 1rcqA 300 :SMDMLTVDLTD T0547 500 :HDVDVEKENYFL 1rcqA 311 :HPQAGLGSRVEL T0547 523 :LGMK 1rcqA 323 :WGPN T0547 555 :SILDTLEDLDYDIHAIM 1rcqA 328 :PVGALAAQFGSIPYQLL T0547 602 :DNGYLKSIGV 1rcqA 348 :KRVPRVYSGA Number of specific fragments extracted= 24 number of extra gaps= 4 total=6587 Will force an alignment to be made, even if fragment is small Number of alignments=272 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)K44 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)I407 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)L408 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 45 :GPLLL 1rcqA 2 :RPARA T0547 50 :RFPHLIQKQIENIYGNF 1rcqA 8 :IDLQALRHNYRLAREAT T0547 80 :NAVYPLKV 1rcqA 27 :RALAVIKA T0547 88 :NQYPGFVKNLVKLG 1rcqA 39 :HGAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 140 :INIGFIAAEM 1rcqA 86 :ELELIVAHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 169 :I 1rcqA 111 :A T0547 172 :E 1rcqA 112 :S T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLHS 1rcqA 124 :DSGM T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 224 :LEQFTMIHFHLGS 1rcqA 149 :KVAKIVMMSHFSR T0547 237 :QITEIHPLKKALNEAGNIYTEL 1rcqA 163 :DELDCPRTEEQLAAFSAASQGL T0547 287 :SRNYTLREYA 1rcqA 185 :EGEISLRNSP T0547 299 :VVF 1rcqA 195 :AVL T0547 309 :QKKDLEPDIFI 1rcqA 198 :GWPKVPSDWVR T0547 321 :SGRFVAA 1rcqA 209 :PGILLYG T0547 328 :NHAVLIAPVLELFSQEYAE 1rcqA 231 :PVMTLESKVISVRDLPAGE T0547 394 :LGYVDLQDRSNAE 1rcqA 250 :PVGYGARYSTERR T0547 409 :THLITKKAILLLGDKQNPA 1rcqA 265 :IGVVAMGYADGYPRHAADG T0547 432 :IQDEV 1rcqA 284 :TLVFI T0547 438 :ERYLVNFSLFQSMPDFW 1rcqA 289 :DGKPGRLVGRVSMDMLT T0547 463 :MPLDRLDE 1rcqA 306 :VDLTDHPQ T0547 471 :EPTRSASIW 1rcqA 315 :GLGSRVELW T0547 480 :DITCD 1rcqA 326 :NVPVG T0547 539 :S 1rcqA 333 :A T0547 550 :IIEAQSILDTLEDLDY 1rcqA 334 :AQFGSIPYQLLCNLKR T0547 605 :YLKSIGV 1rcqA 351 :PRVYSGA Number of specific fragments extracted= 29 number of extra gaps= 4 total=6616 Will force an alignment to be made, even if fragment is small Number of alignments=273 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)Q458 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N459 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1rcqA 2 :RPARALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKV 1rcqA 27 :RALAVIKA T0547 89 :QYPGFVKNLVKLG 1rcqA 40 :GAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 140 :INIGFIAAEM 1rcqA 86 :ELELIVAHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 169 :IA 1rcqA 111 :AS T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLHS 1rcqA 124 :DSGM T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 224 :LEQFTMIHFHLGS 1rcqA 149 :KVAKIVMMSHFSR T0547 237 :QITEIHPLKK 1rcqA 163 :DELDCPRTEE T0547 251 :AGNIYTELRKM 1rcqA 173 :QLAAFSAASQG T0547 263 :AKNL 1rcqA 184 :LEGE T0547 277 :VEY 1rcqA 188 :ISL T0547 283 :KNEKSRNYTLREY 1rcqA 215 :GATPFERAHPLAD T0547 312 :DL 1rcqA 228 :RL T0547 327 :ANHAVLIAPVLELFSQ 1rcqA 230 :RPVMTLESKVISVRDL T0547 456 :LE 1rcqA 261 :RR T0547 460 :FPIMPLDRLDEEPTRS 1rcqA 265 :IGVVAMGYADGYPRHA T0547 485 :SDGEI 1rcqA 281 :ADGTL T0547 502 :VDVEKENYFL 1rcqA 286 :VFIDGKPGRL T0547 512 :GF 1rcqA 297 :GR T0547 532 :HPTEAIISIN 1rcqA 300 :SMDMLTVDLT T0547 542 :EKGYEVEGIIEAQSILDTLEDLDYDIHAIMDIL 1rcqA 315 :GLGSRVELWGPNVPVGALAAQFGSIPYQLLCNL T0547 602 :DNGYLKSIGV 1rcqA 348 :KRVPRVYSGA Number of specific fragments extracted= 26 number of extra gaps= 4 total=6642 Will force an alignment to be made, even if fragment is small Number of alignments=274 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)I407 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)L408 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1rcqA 2 :RPARALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKV 1rcqA 27 :RALAVIKA T0547 88 :NQYPGFVKNLVKLG 1rcqA 39 :HGAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDREL 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEASE T0547 141 :NIGFIAAEM 1rcqA 87 :LELIVAHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLHS 1rcqA 124 :DSGM T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 224 :LEQFTMIHFHLGS 1rcqA 149 :KVAKIVMMSHFSR T0547 237 :QITEIHPLKKALNEAGNIYT 1rcqA 163 :DELDCPRTEEQLAAFSAASQ T0547 263 :AKNLKAI 1rcqA 183 :GLEGEIS T0547 287 :S 1rcqA 192 :N T0547 304 :KNIAEQKKDLEPDIFI 1rcqA 193 :SPAVLGWPKVPSDWVR T0547 321 :SGRFVAA 1rcqA 209 :PGILLYG T0547 328 :NHAVLIAPVLELFSQEYAENK 1rcqA 231 :PVMTLESKVISVRDLPAGEPV T0547 396 :YVDLQ 1rcqA 252 :GYGAR T0547 403 :SNAE 1rcqA 259 :TERR T0547 409 :THLITKKAILLLGDKQNPADLLA 1rcqA 265 :IGVVAMGYADGYPRHAADGTLVF T0547 438 :ERYLVNFSLFQSMP 1rcqA 289 :DGKPGRLVGRVSMD T0547 535 :EAIISINE 1rcqA 303 :MLTVDLTD T0547 543 :KGYEVEGIIEAQSILDTLEDLDYD 1rcqA 316 :LGSRVELWGPNVPVGALAAQFGSI T0547 596 :LYLFLNDNG 1rcqA 340 :PYQLLCNLK T0547 605 :YLKSIGV 1rcqA 351 :PRVYSGA Number of specific fragments extracted= 24 number of extra gaps= 4 total=6666 Will force an alignment to be made, even if fragment is small Number of alignments=275 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)Y43 because first residue in template chain is (1rcqA)M1 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)I407 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)L408 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1rcqA 2 :RPARALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKV 1rcqA 27 :RALAVIKA T0547 88 :NQYPGFVKNLVKLG 1rcqA 39 :HGAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 140 :INIGFIAAEM 1rcqA 86 :ELELIVAHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :RLHS 1rcqA 124 :DSGM T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 224 :LEQFTMIHFHLGSQI 1rcqA 149 :KVAKIVMMSHFSRAD T0547 239 :TEIH 1rcqA 165 :LDCP T0547 247 :ALNEAGNIYTELRKM 1rcqA 169 :RTEEQLAAFSAASQG T0547 263 :AKNLKAI 1rcqA 184 :LEGEISL T0547 304 :KNIAEQKKDLEPDIF 1rcqA 193 :SPAVLGWPKVPSDWV T0547 328 :NHAVLIAPVLELFSQEYAENK 1rcqA 231 :PVMTLESKVISVRDLPAGEPV T0547 398 :DLQDR 1rcqA 252 :GYGAR T0547 403 :SNAE 1rcqA 259 :TERR T0547 409 :THLITKKAILLLGDKQNPADLLA 1rcqA 265 :IGVVAMGYADGYPRHAADGTLVF T0547 437 :QERYLVNFSLFQSMPDF 1rcqA 288 :IDGKPGRLVGRVSMDML T0547 492 :SKDKPLFLHDV 1rcqA 305 :TVDLTDHPQAG T0547 543 :KGYEVEGIIEAQSILDTLEDLDYDIHAIMD 1rcqA 316 :LGSRVELWGPNVPVGALAAQFGSIPYQLLC T0547 602 :DNGYLKSIGV 1rcqA 348 :KRVPRVYSGA Number of specific fragments extracted= 22 number of extra gaps= 4 total=6688 Will force an alignment to be made, even if fragment is small Number of alignments=276 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)K68 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 49 :LRFPHLIQKQIENIYGNF 1rcqA 7 :LIDLQALRHNYRLAREAT T0547 69 :ARK 1rcqA 27 :RAL T0547 73 :FGYKGGFNAVY 1rcqA 30 :AVIKADAYGHG T0547 90 :YPGFVKNLVKLG 1rcqA 41 :AVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEA T0547 139 :LINIGFIAAEM 1rcqA 85 :SELELIVAHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 169 :IAKE 1rcqA 111 :ASLA T0547 176 :PKPNIG 1rcqA 115 :RPLNVW T0547 185 :RLHSAGV 1rcqA 124 :DSGMHRV T0547 205 :GLTSTELIEAVNLLKE 1rcqA 131 :GFFPEDFRAAHERLRA T0547 223 :LLEQFTMIHFHLGSQITEIHPLK 1rcqA 149 :KVAKIVMMSHFSRADELDCPRTE Number of specific fragments extracted= 12 number of extra gaps= 3 total=6700 Will force an alignment to be made, even if fragment is small Number of alignments=277 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 47 :LLLRFPHLIQKQIENIYGNF 1rcqA 5 :RALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKV 1rcqA 27 :RALAVIKA T0547 88 :NQYPGFVKNLVKLG 1rcqA 39 :HGAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 140 :INIGFIAAEM 1rcqA 86 :ELELIVAHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLHSA 1rcqA 124 :DSGMH T0547 203 :KFGLTSTELIEAVNLLKE 1rcqA 129 :RVGFFPEDFRAAHERLRA T0547 224 :LEQFTMIHFHLGSQI 1rcqA 149 :KVAKIVMMSHFSRAD T0547 239 :TEI 1rcqA 165 :LDC T0547 247 :ALNEAGNIYTELRKMGA 1rcqA 169 :RTEEQLAAFSAASQGLE T0547 307 :AEQKKD 1rcqA 224 :PLADRL T0547 327 :ANHAVLIAPVLELFSQ 1rcqA 230 :RPVMTLESKVISVRDL T0547 343 :EY 1rcqA 261 :RR T0547 347 :NKLILKK 1rcqA 265 :IGVVAMG T0547 366 :YKSIKPSNALEYLHD 1rcqA 272 :YADGYPRHAADGTLV T0547 381 :SIDHLESI 1rcqA 292 :PGRLVGRV T0547 391 :LFDLGYVDLQDR 1rcqA 300 :SMDMLTVDLTDH T0547 501 :DVDVEKENYFL 1rcqA 312 :PQAGLGSRVEL T0547 523 :LGMK 1rcqA 323 :WGPN T0547 555 :SILDTLEDLDYDIHAIM 1rcqA 328 :PVGALAAQFGSIPYQLL Number of specific fragments extracted= 22 number of extra gaps= 4 total=6722 Will force an alignment to be made, even if fragment is small Number of alignments=278 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)I407 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)L408 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 46 :PLLL 1rcqA 3 :PARA T0547 50 :RFPHLIQKQIENIYGNF 1rcqA 8 :IDLQALRHNYRLAREAT T0547 80 :NAVYPLKV 1rcqA 27 :RALAVIKA T0547 88 :NQYPGFVKNLVKLG 1rcqA 39 :HGAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 140 :INIGFIAAEM 1rcqA 86 :ELELIVAHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 169 :I 1rcqA 111 :A T0547 172 :E 1rcqA 112 :S T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLHS 1rcqA 124 :DSGM T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 224 :LEQFTMIHFHLGS 1rcqA 149 :KVAKIVMMSHFSR T0547 237 :QITEIHPLKKALNEAGNIYTEL 1rcqA 163 :DELDCPRTEEQLAAFSAASQGL T0547 287 :SRNYTLREYA 1rcqA 185 :EGEISLRNSP T0547 299 :VVF 1rcqA 195 :AVL T0547 309 :QKKDLEPDIFI 1rcqA 198 :GWPKVPSDWVR T0547 321 :SGRFVAA 1rcqA 209 :PGILLYG T0547 328 :NHAVLIAPVLELFSQEYAE 1rcqA 231 :PVMTLESKVISVRDLPAGE T0547 394 :LGYVDLQDRSNAE 1rcqA 250 :PVGYGARYSTERR T0547 409 :THLITKKAILLLGDKQNPA 1rcqA 265 :IGVVAMGYADGYPRHAADG T0547 432 :IQDEV 1rcqA 284 :TLVFI T0547 438 :ERYLVNFSLFQSMPDFW 1rcqA 289 :DGKPGRLVGRVSMDMLT T0547 463 :MPLDRLDE 1rcqA 306 :VDLTDHPQ T0547 471 :EPTRSASIW 1rcqA 315 :GLGSRVELW T0547 480 :DITCD 1rcqA 326 :NVPVG Number of specific fragments extracted= 26 number of extra gaps= 4 total=6748 Will force an alignment to be made, even if fragment is small Number of alignments=279 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)Q458 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)N459 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 47 :LLLRFPHLIQKQIENIYGNF 1rcqA 5 :RALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKV 1rcqA 27 :RALAVIKA T0547 89 :QYPGFVKNLVKLG 1rcqA 40 :GAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 140 :INIGFIAAEM 1rcqA 86 :ELELIVAHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 169 :IA 1rcqA 111 :AS T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLHS 1rcqA 124 :DSGM T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 224 :LEQFTMIHFHLGS 1rcqA 149 :KVAKIVMMSHFSR T0547 237 :QITEIHPLKK 1rcqA 163 :DELDCPRTEE T0547 251 :AGNIYTELRKM 1rcqA 173 :QLAAFSAASQG T0547 263 :AKNL 1rcqA 184 :LEGE T0547 277 :VEY 1rcqA 188 :ISL T0547 283 :KNEKSRNYTLREY 1rcqA 215 :GATPFERAHPLAD T0547 312 :DL 1rcqA 228 :RL T0547 327 :ANHAVLIAPVLELFSQ 1rcqA 230 :RPVMTLESKVISVRDL T0547 456 :LE 1rcqA 261 :RR T0547 460 :FPIMPLDRLDEEPTRS 1rcqA 265 :IGVVAMGYADGYPRHA T0547 485 :SDGEI 1rcqA 281 :ADGTL T0547 502 :VDVEKENYFL 1rcqA 286 :VFIDGKPGRL T0547 512 :GF 1rcqA 297 :GR T0547 532 :HPTEAIISIN 1rcqA 300 :SMDMLTVDLT T0547 542 :EKGYEVEGIIEAQSILDTLEDLDYDIHAIMD 1rcqA 315 :GLGSRVELWGPNVPVGALAAQFGSIPYQLLC Number of specific fragments extracted= 25 number of extra gaps= 4 total=6773 Will force an alignment to be made, even if fragment is small Number of alignments=280 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)I407 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)L408 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 45 :GPLLLRFPHLIQKQIENIYGNF 1rcqA 3 :PARALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKV 1rcqA 27 :RALAVIKA T0547 88 :NQYPGFVKNLVKLG 1rcqA 39 :HGAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDREL 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEASE T0547 141 :NIGFIAAEM 1rcqA 87 :LELIVAHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 174 :FKPKPNIG 1rcqA 113 :LARPLNVW T0547 185 :RLHS 1rcqA 124 :DSGM T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 224 :LEQFTMIHFHLGS 1rcqA 149 :KVAKIVMMSHFSR T0547 237 :QITEIHPLKKALNEAGNIYT 1rcqA 163 :DELDCPRTEEQLAAFSAASQ T0547 263 :AKNLKAI 1rcqA 183 :GLEGEIS T0547 287 :S 1rcqA 192 :N T0547 304 :KNIAEQKKDLEPDIFI 1rcqA 193 :SPAVLGWPKVPSDWVR T0547 321 :SGRFVAA 1rcqA 209 :PGILLYG T0547 328 :NHAVLIAPVLELFSQEYAENK 1rcqA 231 :PVMTLESKVISVRDLPAGEPV T0547 396 :YVDLQ 1rcqA 252 :GYGAR T0547 403 :SNAE 1rcqA 259 :TERR T0547 409 :THLITKKAILLLGDKQNPADLLA 1rcqA 265 :IGVVAMGYADGYPRHAADGTLVF T0547 438 :ERYLVNFSLFQSMP 1rcqA 289 :DGKPGRLVGRVSMD T0547 535 :EAIISINE 1rcqA 303 :MLTVDLTD T0547 543 :KGYEVEGIIEAQSILDTLEDLD 1rcqA 316 :LGSRVELWGPNVPVGALAAQFG Number of specific fragments extracted= 22 number of extra gaps= 4 total=6795 Will force an alignment to be made, even if fragment is small Number of alignments=281 # 1rcqA read from all-align.a2m # found chain 1rcqA in training set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 Warning: unaligning (T0547)I167 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R110 Warning: unaligning (T0547)D168 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R110 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)I407 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)R264 Warning: unaligning (T0547)L408 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)R264 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 1rcqA 2 :RPARALIDLQALRHNYRLAREAT T0547 80 :NAVYPLKV 1rcqA 27 :RALAVIKA T0547 88 :NQYPGFVKNLVKLG 1rcqA 39 :HGAVRCAEALAAEA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1rcqA 53 :DGFAVACIEEGLELREAGIRQPILLLEGFFEAS T0547 140 :INIGFIAAEM 1rcqA 86 :ELELIVAHDF T0547 154 :TLTIEGLNELEAI 1rcqA 96 :WCVVHCAWQLEAI T0547 173 :RFKPKPNIG 1rcqA 112 :SLARPLNVW T0547 185 :RLHS 1rcqA 124 :DSGM T0547 202 :SKFGLTSTELIEAVNLLKE 1rcqA 128 :HRVGFFPEDFRAAHERLRA T0547 224 :LEQFTMIHFHLGSQI 1rcqA 149 :KVAKIVMMSHFSRAD T0547 239 :TEIH 1rcqA 165 :LDCP T0547 247 :ALNEAGNIYTELRKM 1rcqA 169 :RTEEQLAAFSAASQG T0547 263 :AKNLKAI 1rcqA 184 :LEGEISL T0547 304 :KNIAEQKKDLEPDIF 1rcqA 193 :SPAVLGWPKVPSDWV T0547 328 :NHAVLIAPVLELFSQEYAENK 1rcqA 231 :PVMTLESKVISVRDLPAGEPV T0547 398 :DLQDR 1rcqA 252 :GYGAR T0547 403 :SNAE 1rcqA 259 :TERR T0547 409 :THLITKKAILLLGDKQNPADLLA 1rcqA 265 :IGVVAMGYADGYPRHAADGTLVF T0547 437 :QERYLVNFSLFQSMPDF 1rcqA 288 :IDGKPGRLVGRVSMDML T0547 492 :SKDKPLFLHDV 1rcqA 305 :TVDLTDHPQAG T0547 543 :KGYEVEGIIEAQSILDTLEDLDYDIHAIMD 1rcqA 316 :LGSRVELWGPNVPVGALAAQFGSIPYQLLC Number of specific fragments extracted= 21 number of extra gaps= 4 total=6816 Will force an alignment to be made, even if fragment is small Number of alignments=282 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)I570 because last residue in template chain is (1tufA)L448 T0547 9 :WGNENFIIKNGKVCIN 1tufA 16 :LGNDTVEIKDGRFFID T0547 28 :KPAIIDIVKEL 1tufA 32 :GYDAIELAEKF T0547 44 :KGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1tufA 43 :GTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYP 1tufA 75 :EFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNG 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNG T0547 134 :FKDRELINI 1tufA 128 :CKTKEEIIM T0547 146 :AAEMGHN 1tufA 137 :GIEANIR T0547 154 :TLTIEGLNELEAIIDIAKERFKP 1tufA 144 :AFNVDSISELILINETAKELGET T0547 178 :PNIGLRVRLHSAGVGIWAKS 1tufA 167 :ANVAFRINPNVNPKTHPKIS T0547 198 :GGINSKFGLTSTE 1tufA 188 :GLKKNKFGLDVES T0547 211 :LIEAVNLLKENKLLE 1tufA 203 :AMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1tufA 255 :EIEDVNLGGGLGIPY T0547 284 :NEKSRNYTLREYANDVVFILKNIAE 1tufA 270 :YKDKQIPTQKDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFS 1tufA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKE T0547 434 :DEVQERYLVNFSLFQSMPDFW 1tufA 326 :TPVTKWVMIDAGMNDMMRPAM T0547 456 :LEQNFPI 1tufA 347 :YEAYHHI T0547 464 :PLDRLDE 1tufA 354 :INCKVKN T0547 472 :PTRSASIWDITCDSDGEI 1tufA 361 :EKEVVSIAGGLCESSDVF T0547 494 :DKPLFLHDVDVEK 1tufA 379 :GRDRELDKVEVGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1tufA 392 :VLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 542 :EKGYEV 1tufA 422 :KKGVFL T0547 550 :IIEAQSILDTLEDLDYDIHA 1tufA 428 :IRERETYADLIAKDIVPPHL Number of specific fragments extracted= 24 number of extra gaps= 0 total=6840 Will force an alignment to be made, even if fragment is small Number of alignments=283 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 11 :NENFIIKNGKVCIN 1tufA 18 :NDTVEIKDGRFFID T0547 28 :KPAIIDIVKEL 1tufA 32 :GYDAIELAEKF T0547 44 :KGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1tufA 43 :GTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYP 1tufA 75 :EFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNG 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNG T0547 134 :FKDRELINI 1tufA 128 :CKTKEEIIM T0547 146 :AAEMGHN 1tufA 137 :GIEANIR T0547 154 :TLTIEGLNELEAIIDIAKERFKP 1tufA 144 :AFNVDSISELILINETAKELGET T0547 178 :PNIGLRVRLHSAGVGIWAKS 1tufA 167 :ANVAFRINPNVNPKTHPKIS T0547 198 :GGINSKFGLTSTE 1tufA 188 :GLKKNKFGLDVES T0547 211 :LIEAVNLLKENKLLE 1tufA 203 :AMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1tufA 255 :EIEDVNLGGGLGIPY T0547 284 :NEKSRNYTLREYANDVVFILKNIAE 1tufA 270 :YKDKQIPTQKDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFS 1tufA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKE T0547 434 :DEVQERYLVNFSLFQSMPDFW 1tufA 326 :TPVTKWVMIDAGMNDMMRPAM T0547 456 :LEQNFPI 1tufA 347 :YEAYHHI T0547 464 :PLDRLDE 1tufA 354 :INCKVKN T0547 472 :PTRSASIWDITCDSDGEI 1tufA 361 :EKEVVSIAGGLCESSDVF T0547 494 :DKPLFLHDVDVEK 1tufA 379 :GRDRELDKVEVGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1tufA 392 :VLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 542 :EKGYEV 1tufA 422 :KKGVFL T0547 550 :IIEAQSILDTLEDLDYDI 1tufA 428 :IRERETYADLIAKDIVPP Number of specific fragments extracted= 24 number of extra gaps= 0 total=6864 Will force an alignment to be made, even if fragment is small Number of alignments=284 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)E561 because last residue in template chain is (1tufA)L448 T0547 1 :M 1tufA 15 :F T0547 9 :WGNENFIIKNGKVCINYEKKPAIID 1tufA 16 :LGNDTVEIKDGRFFIDGYDAIELAE T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFNKAR 1tufA 41 :KFGTPLYVMSEEQIKINYNRYIEAFKRWE T0547 73 :FGYKGGFNAVYP 1tufA 70 :EETGKEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYN 1tufA 99 :CGADVVSGGELYIAKLSN T0547 124 :NEGAPITVNGFKDRELINIGF 1tufA 118 :PSKKIVFNGNCKTKEEIIMGI T0547 150 :GHNI 1tufA 139 :EANI T0547 154 :TLTIEGLNELEAIIDIAKER 1tufA 144 :AFNVDSISELILINETAKEL T0547 175 :KPKPNIGLRVRLH 1tufA 164 :GETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTE 1tufA 178 :NPKTHPKISTGLKKNKFGLDVES T0547 211 :LIEAVNLLKENKLLE 1tufA 203 :AMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQF 1tufA 255 :EIEDVNLGGGLGIPYYKD T0547 287 :SRNYTLREYANDVVFILKNIAE 1tufA 273 :KQIPTQKDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1tufA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETP T0547 436 :VQERYLVNFSLFQSMPDFW 1tufA 328 :VTKWVMIDAGMNDMMRPAM T0547 456 :LEQNFPIMPLDRLD 1tufA 347 :YEAYHHIINCKVKN T0547 472 :PTRSASIWDITCDSDGEISYSK 1tufA 361 :EKEVVSIAGGLCESSDVFGRDR T0547 498 :FLH 1tufA 383 :ELD T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1tufA 386 :KVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 540 :INEKGYEVEGIIEAQSILDTL 1tufA 427 :LIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 22 number of extra gaps= 0 total=6886 Will force an alignment to be made, even if fragment is small Number of alignments=285 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 10 :GNENFIIKNGKVCINYEKKPAIID 1tufA 17 :GNDTVEIKDGRFFIDGYDAIELAE T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFNKAR 1tufA 41 :KFGTPLYVMSEEQIKINYNRYIEAFKRWE T0547 73 :FGYKGGFNAVYP 1tufA 70 :EETGKEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYN 1tufA 99 :CGADVVSGGELYIAKLSN T0547 124 :NEGAPITVNGFKDRELINIGF 1tufA 118 :PSKKIVFNGNCKTKEEIIMGI T0547 150 :GHNI 1tufA 139 :EANI T0547 154 :TLTIEGLNELEAIIDIAKER 1tufA 144 :AFNVDSISELILINETAKEL T0547 175 :KPKPNIGLRVRLH 1tufA 164 :GETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTE 1tufA 178 :NPKTHPKISTGLKKNKFGLDVES T0547 211 :LIEAVNLLKENKLLE 1tufA 203 :AMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQF 1tufA 255 :EIEDVNLGGGLGIPYYKD T0547 287 :SRNYTLREYANDVVFILKNIAE 1tufA 273 :KQIPTQKDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1tufA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETP T0547 436 :VQERYLVNFSLFQSMPDFW 1tufA 328 :VTKWVMIDAGMNDMMRPAM T0547 456 :LEQNFPIMPLDRLD 1tufA 347 :YEAYHHIINCKVKN T0547 472 :PTRSASIWDITCDSDGEISYSK 1tufA 361 :EKEVVSIAGGLCESSDVFGRDR T0547 498 :FLH 1tufA 383 :ELD T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1tufA 386 :KVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 540 :INEKGYEVEGIIEAQSILD 1tufA 427 :LIRERETYADLIAKDIVPP Number of specific fragments extracted= 21 number of extra gaps= 0 total=6907 Will force an alignment to be made, even if fragment is small Number of alignments=286 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)I16 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)P461 because last residue in template chain is (1tufA)L448 T0547 17 :KNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1tufA 16 :LGNDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYP 1tufA 74 :KEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1tufA 132 :EEIIM T0547 146 :AAEMGHNI 1tufA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1tufA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1tufA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1tufA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1tufA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1tufA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1tufA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1tufA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 1tufA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETP T0547 345 :AENKLILKKQNPKLIDE 1tufA 328 :VTKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1tufA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1tufA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1tufA 384 :LDKVEVGDVLAIFDVGAYGISMANNYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1tufA 413 :GRPRMVLTSKKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 20 number of extra gaps= 0 total=6927 Will force an alignment to be made, even if fragment is small Number of alignments=287 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)I16 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)P461 because last residue in template chain is (1tufA)L448 T0547 17 :KNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1tufA 16 :LGNDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYP 1tufA 75 :EFIVAYA T0547 88 :NQYPGFVKNLVKLGK 1tufA 85 :NANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1tufA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1tufA 132 :EEIIM T0547 146 :AAEMGHNI 1tufA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1tufA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1tufA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1tufA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1tufA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1tufA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKS 1tufA 270 :YKDKQI T0547 290 :YTLREYANDVVFILKNIAEQK 1tufA 276 :PTQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1tufA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1tufA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1tufA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1tufA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1tufA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1tufA 416 :RMVLTSKKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 20 number of extra gaps= 0 total=6947 Will force an alignment to be made, even if fragment is small Number of alignments=288 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)P461 because last residue in template chain is (1tufA)L448 T0547 1 :M 1tufA 15 :F T0547 17 :KNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1tufA 16 :LGNDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYP 1tufA 76 :FIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1tufA 132 :EEIIM T0547 146 :AAEMGHNI 1tufA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1tufA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1tufA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1tufA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLE 1tufA 202 :IAMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1tufA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1tufA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNI 1tufA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1tufA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1tufA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1tufA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1tufA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1tufA 416 :RMVLTSKKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 21 number of extra gaps= 0 total=6968 Will force an alignment to be made, even if fragment is small Number of alignments=289 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)P461 because last residue in template chain is (1tufA)L448 T0547 9 :WGNENFIIKN 1tufA 16 :LGNDTVEIKD T0547 27 :KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1tufA 26 :GRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYP 1tufA 76 :FIVAYA T0547 88 :NQYPGFVKNLVKLGK 1tufA 85 :NANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1tufA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1tufA 132 :EEIIM T0547 146 :AAEMGHNI 1tufA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1tufA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1tufA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1tufA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLE 1tufA 202 :IAMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1tufA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1tufA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNI 1tufA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1tufA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1tufA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1tufA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1tufA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1tufA 416 :RMVLTSKKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 21 number of extra gaps= 0 total=6989 Will force an alignment to be made, even if fragment is small Number of alignments=290 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 1 :MMD 1tufA 15 :FLG T0547 19 :GKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1tufA 18 :NDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYP 1tufA 76 :FIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1tufA 132 :EEIIM T0547 146 :AAEMGHNI 1tufA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1tufA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1tufA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1tufA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1tufA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1tufA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1tufA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNI 1tufA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1tufA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1tufA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1tufA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1tufA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :L 1tufA 415 :P T0547 536 :AIISINEKGYEVEG 1tufA 416 :RMVLTSKKGVFLIR T0547 582 :KLVNDKQK 1tufA 430 :ERETYADL T0547 601 :NDNGYLKSIGV 1tufA 438 :IAKDIVPPHLL Number of specific fragments extracted= 24 number of extra gaps= 0 total=7013 Will force an alignment to be made, even if fragment is small Number of alignments=291 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)I16 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)P461 because last residue in template chain is (1tufA)L448 T0547 17 :KNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1tufA 16 :LGNDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYP 1tufA 76 :FIVAYA T0547 88 :NQYPGFVKNLVKLGK 1tufA 85 :NANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1tufA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1tufA 132 :EEIIM T0547 146 :AAEMGHNI 1tufA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1tufA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1tufA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1tufA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1tufA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1tufA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1tufA 270 :YKDKQIP T0547 291 :TLREYANDVVFIL 1tufA 277 :TQKDLADAIINTM T0547 306 :IAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1tufA 290 :LKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1tufA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNA 1tufA 346 :MYEAYHHIINCKV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 1tufA 359 :KNEKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1tufA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1tufA 416 :RMVLTSKKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 20 number of extra gaps= 0 total=7033 Will force an alignment to be made, even if fragment is small Number of alignments=292 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 19 :GKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1tufA 18 :NDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYP 1tufA 74 :KEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1tufA 132 :EEIIM T0547 146 :AAEMGHNI 1tufA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1tufA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1tufA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1tufA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1tufA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1tufA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1tufA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1tufA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 1tufA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETP T0547 345 :AENKLILKKQNPKLIDE 1tufA 328 :VTKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1tufA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1tufA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1tufA 384 :LDKVEVGDVLAIFDVGAYGISMANNYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 1tufA 413 :GRPRMVLTSKKGVFLIRERETYADLIAKDIVPPH Number of specific fragments extracted= 20 number of extra gaps= 0 total=7053 Will force an alignment to be made, even if fragment is small Number of alignments=293 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1tufA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYP 1tufA 75 :EFIVAYA T0547 88 :NQYPGFVKNLVKLGK 1tufA 85 :NANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1tufA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1tufA 132 :EEIIM T0547 146 :AAEMGHNI 1tufA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1tufA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1tufA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1tufA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1tufA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1tufA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKS 1tufA 270 :YKDKQI T0547 290 :YTLREYANDVVFILKNIAEQK 1tufA 276 :PTQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1tufA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1tufA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1tufA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1tufA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1tufA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDF 1tufA 416 :RMVLTSKKGVFLIRERETYADLIAK Number of specific fragments extracted= 20 number of extra gaps= 0 total=7073 Will force an alignment to be made, even if fragment is small Number of alignments=294 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 19 :GKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1tufA 18 :NDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYP 1tufA 76 :FIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1tufA 132 :EEIIM T0547 146 :AAEMGHNI 1tufA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1tufA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1tufA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1tufA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLE 1tufA 202 :IAMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1tufA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1tufA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNI 1tufA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1tufA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1tufA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1tufA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1tufA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1tufA 416 :RMVLTSKKGVFLIRERETYADLIAKDIVPP Number of specific fragments extracted= 20 number of extra gaps= 0 total=7093 Will force an alignment to be made, even if fragment is small Number of alignments=295 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 14 :FI 1tufA 21 :VE T0547 24 :NYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1tufA 23 :IKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYP 1tufA 76 :FIVAYA T0547 88 :NQYPGFVKNLVKLGK 1tufA 85 :NANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1tufA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1tufA 132 :EEIIM T0547 146 :AAEMGHNI 1tufA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1tufA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1tufA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1tufA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLE 1tufA 202 :IAMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1tufA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1tufA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNI 1tufA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1tufA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1tufA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1tufA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1tufA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1tufA 416 :RMVLTSKKGVFLIRERETYADLIAKDIVPP Number of specific fragments extracted= 21 number of extra gaps= 0 total=7114 Will force an alignment to be made, even if fragment is small Number of alignments=296 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 23 :INYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1tufA 22 :EIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYP 1tufA 76 :FIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1tufA 132 :EEIIM T0547 146 :AAEMGHNI 1tufA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1tufA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1tufA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1tufA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1tufA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1tufA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1tufA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNI 1tufA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1tufA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1tufA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1tufA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1tufA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :L 1tufA 415 :P T0547 536 :AIISINEKGYEVEG 1tufA 416 :RMVLTSKKGVFLIR T0547 582 :KLVNDKQK 1tufA 430 :ERETYADL Number of specific fragments extracted= 22 number of extra gaps= 0 total=7136 Will force an alignment to be made, even if fragment is small Number of alignments=297 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1tufA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYP 1tufA 76 :FIVAYA T0547 88 :NQYPGFVKNLVKLGK 1tufA 85 :NANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1tufA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1tufA 132 :EEIIM T0547 146 :AAEMGHNI 1tufA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1tufA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1tufA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1tufA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1tufA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1tufA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1tufA 270 :YKDKQIP T0547 291 :TLREYANDVVFIL 1tufA 277 :TQKDLADAIINTM T0547 306 :IAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1tufA 290 :LKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1tufA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNA 1tufA 346 :MYEAYHHIINCKV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 1tufA 359 :KNEKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1tufA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1tufA 416 :RMVLTSKKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 20 number of extra gaps= 0 total=7156 Will force an alignment to be made, even if fragment is small Number of alignments=298 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)P464 because last residue in template chain is (1tufA)L448 T0547 9 :WGNENFIIKNGKVCI 1tufA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1tufA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1tufA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYP 1tufA 74 :KEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1tufA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1tufA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1tufA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1tufA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTSTE 1tufA 190 :KKNKFGLDVES T0547 211 :LIEAVNLLKENKLLEQFT 1tufA 203 :AMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1tufA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1tufA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1tufA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1tufA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1tufA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1tufA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 1tufA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKK T0547 440 :YLVNFSLFQSMPDFWGLEQNFPIM 1tufA 424 :GVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 21 number of extra gaps= 0 total=7177 Will force an alignment to be made, even if fragment is small Number of alignments=299 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)L468 because last residue in template chain is (1tufA)L448 T0547 9 :WGNENFIIKNGKVCI 1tufA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1tufA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1tufA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYP 1tufA 74 :KEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1tufA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1tufA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1tufA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1tufA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1tufA 190 :KKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLEQFT 1tufA 202 :IAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1tufA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1tufA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1tufA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1tufA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1tufA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1tufA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1tufA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKG T0547 441 :LVNFSLFQSMPDFWGLE 1tufA 425 :VFLIRERETYADLIAKD T0547 462 :IMPLDR 1tufA 442 :IVPPHL Number of specific fragments extracted= 22 number of extra gaps= 0 total=7199 Will force an alignment to be made, even if fragment is small Number of alignments=300 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)P464 because last residue in template chain is (1tufA)L448 T0547 9 :WGNENFIIKNGKVCI 1tufA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1tufA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1tufA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYP 1tufA 74 :KEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1tufA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1tufA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1tufA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1tufA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTS 1tufA 190 :KKNKFGLDV T0547 209 :TELIEAVNLLKENKLLEQFT 1tufA 201 :GIAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1tufA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1tufA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1tufA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1tufA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1tufA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1tufA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1tufA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKG T0547 441 :LVNFSLFQSMPDFWGLEQNFPIM 1tufA 425 :VFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 21 number of extra gaps= 0 total=7220 Will force an alignment to be made, even if fragment is small Number of alignments=301 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)L468 because last residue in template chain is (1tufA)L448 T0547 9 :WGNENFIIKNGKVCI 1tufA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1tufA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1tufA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYP 1tufA 74 :KEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1tufA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1tufA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1tufA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1tufA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1tufA 190 :KKNKFGLDVE T0547 211 :LIEAVNLLKENKLLEQFT 1tufA 203 :AMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1tufA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1tufA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1tufA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1tufA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1tufA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1tufA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1tufA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKG T0547 441 :LVNFSLFQSMPDFWGLE 1tufA 425 :VFLIRERETYADLIAKD T0547 462 :IMPLDR 1tufA 442 :IVPPHL Number of specific fragments extracted= 22 number of extra gaps= 0 total=7242 Will force an alignment to be made, even if fragment is small Number of alignments=302 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)L468 because last residue in template chain is (1tufA)L448 T0547 9 :WGNENFIIKNGKVCI 1tufA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1tufA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1tufA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYP 1tufA 74 :KEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1tufA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1tufA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1tufA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1tufA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTS 1tufA 190 :KKNKFGLDV T0547 209 :TELIEAVNLLKENKLLEQFT 1tufA 201 :GIAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1tufA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNI 1tufA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1tufA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1tufA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1tufA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1tufA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKG T0547 441 :LVNFSLFQSMPDFWGLE 1tufA 425 :VFLIRERETYADLIAKD T0547 462 :IMPLDR 1tufA 442 :IVPPHL Number of specific fragments extracted= 22 number of extra gaps= 0 total=7264 Will force an alignment to be made, even if fragment is small Number of alignments=303 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)L468 because last residue in template chain is (1tufA)L448 T0547 9 :WGNENFIIKNGKVCI 1tufA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1tufA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1tufA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYP 1tufA 74 :KEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1tufA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1tufA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1tufA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1tufA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1tufA 190 :KKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLEQFT 1tufA 202 :IAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1tufA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNI 1tufA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1tufA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1tufA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1tufA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 1tufA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSK T0547 439 :RYLVNFSLFQSMPDFWGLE 1tufA 423 :KGVFLIRERETYADLIAKD T0547 462 :IMPLDR 1tufA 442 :IVPPHL Number of specific fragments extracted= 22 number of extra gaps= 0 total=7286 Will force an alignment to be made, even if fragment is small Number of alignments=304 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 9 :WGNENFIIKNGKVCI 1tufA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1tufA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1tufA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYP 1tufA 74 :KEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1tufA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1tufA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1tufA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1tufA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTSTE 1tufA 190 :KKNKFGLDVES T0547 211 :LIEAVNLLKENKLLEQFT 1tufA 203 :AMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1tufA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1tufA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1tufA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1tufA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1tufA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1tufA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 1tufA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKK T0547 440 :YLVNFSLFQSMPDFWGLEQNFPI 1tufA 424 :GVFLIRERETYADLIAKDIVPPH Number of specific fragments extracted= 21 number of extra gaps= 0 total=7307 Will force an alignment to be made, even if fragment is small Number of alignments=305 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 9 :WGNENFIIKNGKVCI 1tufA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1tufA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1tufA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYP 1tufA 74 :KEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1tufA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1tufA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1tufA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1tufA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1tufA 190 :KKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLEQFT 1tufA 202 :IAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1tufA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1tufA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1tufA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1tufA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1tufA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1tufA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1tufA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKG T0547 441 :LVNFSLFQSMPDFWGLEQN 1tufA 425 :VFLIRERETYADLIAKDIV T0547 464 :PLD 1tufA 444 :PPH Number of specific fragments extracted= 22 number of extra gaps= 0 total=7329 Will force an alignment to be made, even if fragment is small Number of alignments=306 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 10 :GNENFIIKNGKVCI 1tufA 17 :GNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1tufA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1tufA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYP 1tufA 74 :KEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1tufA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1tufA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1tufA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1tufA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTS 1tufA 190 :KKNKFGLDV T0547 209 :TELIEAVNLLKENKLLEQFT 1tufA 201 :GIAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1tufA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1tufA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1tufA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1tufA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1tufA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1tufA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1tufA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKG T0547 441 :LVNFSLFQSMPDFWGLEQNFPI 1tufA 425 :VFLIRERETYADLIAKDIVPPH Number of specific fragments extracted= 21 number of extra gaps= 0 total=7350 Will force an alignment to be made, even if fragment is small Number of alignments=307 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)L468 because last residue in template chain is (1tufA)L448 T0547 9 :WGNENFIIKNGKVCI 1tufA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1tufA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1tufA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYP 1tufA 74 :KEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1tufA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1tufA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1tufA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1tufA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1tufA 190 :KKNKFGLDVE T0547 211 :LIEAVNLLKENKLLEQFT 1tufA 203 :AMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1tufA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1tufA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1tufA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1tufA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1tufA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1tufA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1tufA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKG T0547 441 :LVNFSLFQSMPDFWGLE 1tufA 425 :VFLIRERETYADLIAKD T0547 462 :IMPLDR 1tufA 442 :IVPPHL Number of specific fragments extracted= 22 number of extra gaps= 0 total=7372 Will force an alignment to be made, even if fragment is small Number of alignments=308 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 9 :WGNENFIIKNGKVCI 1tufA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1tufA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1tufA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYP 1tufA 74 :KEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1tufA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1tufA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1tufA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1tufA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTS 1tufA 190 :KKNKFGLDV T0547 209 :TELIEAVNLLKENKLLEQFT 1tufA 201 :GIAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1tufA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNI 1tufA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1tufA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1tufA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1tufA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1tufA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKG T0547 441 :LVNFSLFQSMPDFWGLE 1tufA 425 :VFLIRERETYADLIAKD T0547 462 :IMPLDR 1tufA 442 :IVPPHL Number of specific fragments extracted= 22 number of extra gaps= 0 total=7394 Will force an alignment to be made, even if fragment is small Number of alignments=309 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)L468 because last residue in template chain is (1tufA)L448 T0547 9 :WGNENFIIKNGKVCI 1tufA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1tufA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1tufA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYP 1tufA 74 :KEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1tufA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1tufA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1tufA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1tufA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1tufA 190 :KKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLEQFT 1tufA 202 :IAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1tufA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1tufA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNI 1tufA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1tufA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1tufA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1tufA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 1tufA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSK T0547 439 :RYLVNFSLFQSMPDFWGLE 1tufA 423 :KGVFLIRERETYADLIAKD T0547 462 :IMPLDR 1tufA 442 :IVPPHL Number of specific fragments extracted= 22 number of extra gaps= 0 total=7416 Will force an alignment to be made, even if fragment is small Number of alignments=310 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)I16 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)P464 because last residue in template chain is (1tufA)L448 T0547 17 :KNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEF 1tufA 16 :LGNDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEET T0547 76 :KGGFNAVYP 1tufA 73 :GKEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1tufA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1tufA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1tufA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1tufA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1tufA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1tufA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNI 1tufA 279 :KDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALE 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1tufA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIM 1tufA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 14 number of extra gaps= 0 total=7430 Will force an alignment to be made, even if fragment is small Number of alignments=311 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)D3 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 4 :YGIDI 1tufA 16 :LGNDT T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1tufA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYP 1tufA 75 :EFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1tufA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1tufA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTST 1tufA 184 :KISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENK 1tufA 202 :IAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1tufA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1tufA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNIAE 1tufA 279 :KDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALE 1tufA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1tufA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 1tufA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKD T0547 462 :IMP 1tufA 442 :IVP T0547 521 :EVL 1tufA 445 :PHL Number of specific fragments extracted= 17 number of extra gaps= 0 total=7447 Will force an alignment to be made, even if fragment is small Number of alignments=312 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)D3 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)K589 because last residue in template chain is (1tufA)L448 T0547 4 :YGID 1tufA 16 :LGND T0547 21 :VCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARK 1tufA 20 :TVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEE T0547 74 :GYKGGFNAVYP 1tufA 71 :ETGKEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1tufA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1tufA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1tufA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1tufA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1tufA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 1tufA 253 :GIEIEDVNLGGGLGIPYYKDKQIPT T0547 292 :LREYANDVVFILKNI 1tufA 278 :QKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALE 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1tufA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1tufA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKDI T0547 584 :VNDKQ 1tufA 443 :VPPHL Number of specific fragments extracted= 16 number of extra gaps= 0 total=7463 Will force an alignment to be made, even if fragment is small Number of alignments=313 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)D3 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 4 :YGIDI 1tufA 16 :LGNDT T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1tufA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYP 1tufA 75 :EFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1tufA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1tufA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTST 1tufA 184 :KISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENK 1tufA 202 :IAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1tufA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1tufA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNIAE 1tufA 279 :KDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1tufA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC T0547 375 :L 1tufA 359 :K T0547 377 :YLHDSIDHLESILTLFDLGYVDLQDR 1tufA 360 :NEKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1tufA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKDIVP T0547 502 :VDV 1tufA 445 :PHL Number of specific fragments extracted= 17 number of extra gaps= 0 total=7480 Will force an alignment to be made, even if fragment is small Number of alignments=314 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)D3 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)H500 because last residue in template chain is (1tufA)L448 T0547 4 :YGIDI 1tufA 16 :LGNDT T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKE 1tufA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEE T0547 75 :YKGGFNAVYP 1tufA 72 :TGKEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1tufA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1tufA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1tufA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1tufA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1tufA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 1tufA 253 :GIEIEDVNLGGGLGIPYYKDKQIPT T0547 292 :LREYANDVVFILKNI 1tufA 278 :QKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC T0547 374 :ALE 1tufA 358 :VKN T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1tufA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 1tufA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKD T0547 470 :EEPT 1tufA 442 :IVPP T0547 497 :L 1tufA 446 :H T0547 499 :L 1tufA 447 :L Number of specific fragments extracted= 19 number of extra gaps= 0 total=7499 Will force an alignment to be made, even if fragment is small Number of alignments=315 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)D3 because first residue in template chain is (1tufA)F15 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 Warning: unaligning (T0547)L468 because last residue in template chain is (1tufA)L448 T0547 4 :YGID 1tufA 16 :LGND T0547 21 :VCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARK 1tufA 20 :TVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEE T0547 74 :GYKGGFNAVYP 1tufA 71 :ETGKEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1tufA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1tufA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1tufA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1tufA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1tufA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1tufA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNI 1tufA 279 :KDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC T0547 377 :YLHDSIDHLESILTLFDLGYVDLQDR 1tufA 360 :NEKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 1tufA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKD T0547 462 :IMPLDR 1tufA 442 :IVPPHL Number of specific fragments extracted= 16 number of extra gaps= 0 total=7515 Will force an alignment to be made, even if fragment is small Number of alignments=316 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 19 :GKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEF 1tufA 18 :NDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEET T0547 76 :KGGFNAVYP 1tufA 73 :GKEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1tufA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1tufA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1tufA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1tufA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1tufA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1tufA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNI 1tufA 279 :KDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALE 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1tufA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPI 1tufA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKDIVPPH Number of specific fragments extracted= 14 number of extra gaps= 0 total=7529 Will force an alignment to be made, even if fragment is small Number of alignments=317 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1tufA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYP 1tufA 75 :EFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1tufA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1tufA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTST 1tufA 184 :KISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENK 1tufA 202 :IAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1tufA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1tufA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNIAE 1tufA 279 :KDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALE 1tufA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1tufA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGL 1tufA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAK Number of specific fragments extracted= 14 number of extra gaps= 0 total=7543 Will force an alignment to be made, even if fragment is small Number of alignments=318 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 20 :KVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARK 1tufA 19 :DTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEE T0547 74 :GYKGGFNAVYP 1tufA 71 :ETGKEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1tufA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1tufA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1tufA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1tufA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1tufA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 1tufA 253 :GIEIEDVNLGGGLGIPYYKDKQIPT T0547 292 :LREYANDVVFILKNI 1tufA 278 :QKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALE 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1tufA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1tufA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKDI Number of specific fragments extracted= 14 number of extra gaps= 0 total=7557 Will force an alignment to be made, even if fragment is small Number of alignments=319 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1tufA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYP 1tufA 75 :EFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1tufA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1tufA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTST 1tufA 184 :KISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENK 1tufA 202 :IAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1tufA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1tufA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNIAE 1tufA 279 :KDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1tufA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC T0547 375 :L 1tufA 359 :K T0547 377 :YLHDSIDHLESILTLFDLGYVDLQDR 1tufA 360 :NEKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1tufA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKDIVP Number of specific fragments extracted= 15 number of extra gaps= 0 total=7572 Will force an alignment to be made, even if fragment is small Number of alignments=320 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKE 1tufA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEE T0547 75 :YKGGFNAVYP 1tufA 72 :TGKEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1tufA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1tufA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1tufA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1tufA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1tufA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 1tufA 253 :GIEIEDVNLGGGLGIPYYKDKQIPT T0547 292 :LREYANDVVFILKNI 1tufA 278 :QKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC T0547 374 :ALE 1tufA 358 :VKN T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1tufA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGL 1tufA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAK T0547 469 :D 1tufA 441 :D Number of specific fragments extracted= 16 number of extra gaps= 0 total=7588 Will force an alignment to be made, even if fragment is small Number of alignments=321 # 1tufA read from all-align.a2m # found chain 1tufA in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tufA)A84 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tufA)A84 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARK 1tufA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEE T0547 74 :GYKGGFNAVYP 1tufA 71 :ETGKEFIVAYA T0547 88 :NQYPGFVKNLVKLG 1tufA 85 :NANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1tufA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1tufA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1tufA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1tufA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1tufA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1tufA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1tufA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNI 1tufA 279 :KDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1tufA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC T0547 377 :YLHDSIDHLESILTLFDLGYVDLQDR 1tufA 360 :NEKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 1tufA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKDIV T0547 464 :P 1tufA 444 :P Number of specific fragments extracted= 15 number of extra gaps= 0 total=7603 Will force an alignment to be made, even if fragment is small Number of alignments=322 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)I570 because last residue in template chain is (1twiA)L448 T0547 9 :WGNENFIIKNGKVCIN 1twiA 16 :LGNDTVEIKDGRFFID T0547 28 :KPAIIDIVKE 1twiA 32 :GYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1twiA 75 :EFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNG 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNG T0547 134 :FKDRELINI 1twiA 128 :CKTKEEIIM T0547 146 :AAEMGHN 1twiA 137 :GIEANIR T0547 154 :TLTIEGLNELEAIIDIAKERFK 1twiA 144 :AFNVDSISELILINETAKELGE T0547 177 :KPNIGLRVRLHSAGVGIWAKS 1twiA 166 :TANVAFRINPNVNPKTHPKIS T0547 198 :GGINSKFGLTSTE 1twiA 188 :GLKKNKFGLDVES T0547 211 :LIEAVNLLKENKLLE 1twiA 203 :AMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK 1twiA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIE T0547 266 :LKAINLGGGLAVEY 1twiA 256 :IEDVNLGGGLGIPY T0547 284 :NEKSRNYTLREYANDVVFILKNIAE 1twiA 270 :YKDKQIPTQKDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFS 1twiA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKE T0547 434 :DEVQERYLVNFSLFQSMPDFW 1twiA 326 :TPVTKWVMIDAGMNDMMRPAM T0547 456 :LEQNFPIMPLDR 1twiA 347 :YEAYHHIINCKV T0547 470 :EEPTRSASIWDITCDSDGEISYS 1twiA 359 :KNEKEVVSIAGGLCESSDVFGRD T0547 497 :LFLHDVDVEK 1twiA 382 :RELDKVEVGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1twiA 392 :VLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 542 :EKGYEV 1twiA 422 :KKGVFL T0547 550 :IIEAQSILDTLEDLDYDIHA 1twiA 428 :IRERETYADLIAKDIVPPHL Number of specific fragments extracted= 22 number of extra gaps= 0 total=7625 Will force an alignment to be made, even if fragment is small Number of alignments=323 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 9 :WGNENFIIKNGKVCIN 1twiA 16 :LGNDTVEIKDGRFFID T0547 28 :KPAIIDIVKE 1twiA 32 :GYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1twiA 75 :EFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNG 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNG T0547 134 :FKDRELINI 1twiA 128 :CKTKEEIIM T0547 146 :AAEMGHN 1twiA 137 :GIEANIR T0547 154 :TLTIEGLNELEAIIDIAKERFK 1twiA 144 :AFNVDSISELILINETAKELGE T0547 177 :KPNIGLRVRLHSAGVGIWAKS 1twiA 166 :TANVAFRINPNVNPKTHPKIS T0547 198 :GGINSKFGLTSTE 1twiA 188 :GLKKNKFGLDVES T0547 211 :LIEAVNLLKENKLLE 1twiA 203 :AMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK 1twiA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIE T0547 266 :LKAINLGGGLAVEY 1twiA 256 :IEDVNLGGGLGIPY T0547 284 :NEKSRNYTLREYANDVVFILKNIAE 1twiA 270 :YKDKQIPTQKDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFS 1twiA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKE T0547 434 :DEVQERYLVNFSLFQSMPDFW 1twiA 326 :TPVTKWVMIDAGMNDMMRPAM T0547 456 :LEQNFPIMPLDR 1twiA 347 :YEAYHHIINCKV T0547 470 :EEPTRSASIWDITCDSDGEISYS 1twiA 359 :KNEKEVVSIAGGLCESSDVFGRD T0547 497 :LFLHDVDVEK 1twiA 382 :RELDKVEVGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1twiA 392 :VLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 542 :EKGYEV 1twiA 422 :KKGVFL T0547 550 :IIEAQSILDTLEDLDYDI 1twiA 428 :IRERETYADLIAKDIVPP Number of specific fragments extracted= 22 number of extra gaps= 0 total=7647 Will force an alignment to be made, even if fragment is small Number of alignments=324 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)I570 because last residue in template chain is (1twiA)L448 T0547 9 :WGNENFIIKNGKVCIN 1twiA 16 :LGNDTVEIKDGRFFID T0547 28 :KPAIIDIVKE 1twiA 32 :GYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1twiA 75 :EFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFN T0547 133 :GFKDRELINI 1twiA 127 :NCKTKEEIIM T0547 146 :AAEMGHNI 1twiA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKERFKP 1twiA 145 :FNVDSISELILINETAKELGET T0547 178 :PNIGLRVRL 1twiA 167 :ANVAFRINP T0547 187 :HSAGVGIWAKSGGINSKFGLTSTE 1twiA 177 :VNPKTHPKISTGLKKNKFGLDVES T0547 211 :LIEAVNLLKENKLLE 1twiA 203 :AMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQF 1twiA 255 :EIEDVNLGGGLGIPYYKD T0547 287 :SRNYTLREYANDVVFILKNIAE 1twiA 273 :KQIPTQKDLADAIINTMLKYKD T0547 310 :KKD 1twiA 296 :VEM T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 1twiA 299 :PNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 437 :QERYLVNFSLFQSMPD 1twiA 329 :TKWVMIDAGMNDMMRP T0547 454 :WGLEQNFPIMPLDR 1twiA 345 :AMYEAYHHIINCKV T0547 470 :EEPTRSASIWDITCDSDGEISYS 1twiA 359 :KNEKEVVSIAGGLCESSDVFGRD T0547 497 :LFLHDVDVEK 1twiA 382 :RELDKVEVGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1twiA 392 :VLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 542 :EKGYEV 1twiA 422 :KKGVFL T0547 550 :IIEAQSILDTLEDLDYDIHA 1twiA 428 :IRERETYADLIAKDIVPPHL Number of specific fragments extracted= 23 number of extra gaps= 0 total=7670 Will force an alignment to be made, even if fragment is small Number of alignments=325 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 9 :WGNENFIIKNGKVCIN 1twiA 16 :LGNDTVEIKDGRFFID T0547 28 :KPAIIDIVKE 1twiA 32 :GYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1twiA 75 :EFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFN T0547 133 :GFKDRELINI 1twiA 127 :NCKTKEEIIM T0547 146 :AAEMGHNI 1twiA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKERFKP 1twiA 145 :FNVDSISELILINETAKELGET T0547 178 :PNIGLRVRL 1twiA 167 :ANVAFRINP T0547 187 :HSAGVGIWAKSGGINSKFGLTSTE 1twiA 177 :VNPKTHPKISTGLKKNKFGLDVES T0547 211 :LIEAVNLLKENKLLE 1twiA 203 :AMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQF 1twiA 255 :EIEDVNLGGGLGIPYYKD T0547 287 :SRNYTLREYANDVVFILKNIAE 1twiA 273 :KQIPTQKDLADAIINTMLKYKD T0547 310 :KKD 1twiA 296 :VEM T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 1twiA 299 :PNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 437 :QERYLVNFSLFQSMPD 1twiA 329 :TKWVMIDAGMNDMMRP T0547 454 :WGLEQNFPIMPLDR 1twiA 345 :AMYEAYHHIINCKV T0547 470 :EEPTRSASIWDITCDSDGEISYS 1twiA 359 :KNEKEVVSIAGGLCESSDVFGRD T0547 497 :LFLHDVDVEK 1twiA 382 :RELDKVEVGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1twiA 392 :VLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 542 :EKGYEV 1twiA 422 :KKGVFL T0547 550 :IIEAQSILDTLEDL 1twiA 428 :IRERETYADLIAKD Number of specific fragments extracted= 23 number of extra gaps= 0 total=7693 Will force an alignment to be made, even if fragment is small Number of alignments=326 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)E561 because last residue in template chain is (1twiA)L448 T0547 1 :M 1twiA 15 :M T0547 9 :WGNENFIIKNGKVCINYEKKPAIID 1twiA 16 :LGNDTVEIKDGRFFIDGYDAIELAE T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFNKAR 1twiA 41 :KFGTPLYVMSEEQIKINYNRYIEAFKRWE T0547 73 :FGYKGGFNAVYPLKVNQYPGFVKNLVKLG 1twiA 70 :EETGKEFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYN 1twiA 99 :CGADVVSGGELYIAKLSN T0547 124 :NEGAPITVNGFKDRELINIGF 1twiA 118 :PSKKIVFNGNCKTKEEIIMGI T0547 150 :GHNI 1twiA 139 :EANI T0547 154 :TLTIEGLNELEAIIDIAKER 1twiA 144 :AFNVDSISELILINETAKEL T0547 175 :KPKPNIGLRVRLH 1twiA 164 :GETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTE 1twiA 178 :NPKTHPKISTGLKKNKFGLDVES T0547 211 :LIEAVNLLKENKLLE 1twiA 203 :AMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQF 1twiA 255 :EIEDVNLGGGLGIPYYKD T0547 287 :SRNYTLREYANDVVFILKNIAE 1twiA 273 :KQIPTQKDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1twiA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETP T0547 436 :VQERYLVNFSLFQSMPDFW 1twiA 328 :VTKWVMIDAGMNDMMRPAM T0547 456 :LEQNFPIMPLDRLD 1twiA 347 :YEAYHHIINCKVKN T0547 472 :PTRSASIWDITCDSDGEISYS 1twiA 361 :EKEVVSIAGGLCESSDVFGRD T0547 497 :LFLH 1twiA 382 :RELD T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1twiA 386 :KVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 540 :INEKGYEVEGIIEAQSILDTL 1twiA 427 :LIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 21 number of extra gaps= 0 total=7714 Will force an alignment to be made, even if fragment is small Number of alignments=327 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 10 :GNENFIIKNGKVCINYEKKPAIID 1twiA 17 :GNDTVEIKDGRFFIDGYDAIELAE T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFNKAR 1twiA 41 :KFGTPLYVMSEEQIKINYNRYIEAFKRWE T0547 73 :FGYKGGFNAVYPLKVNQYPGFVKNLVKLG 1twiA 70 :EETGKEFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYN 1twiA 99 :CGADVVSGGELYIAKLSN T0547 124 :NEGAPITVNGFKDRELINIGF 1twiA 118 :PSKKIVFNGNCKTKEEIIMGI T0547 150 :GHNI 1twiA 139 :EANI T0547 154 :TLTIEGLNELEAIIDIAKER 1twiA 144 :AFNVDSISELILINETAKEL T0547 175 :KPKPNIGLRVRLH 1twiA 164 :GETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTE 1twiA 178 :NPKTHPKISTGLKKNKFGLDVES T0547 211 :LIEAVNLLKENKLLE 1twiA 203 :AMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQF 1twiA 255 :EIEDVNLGGGLGIPYYKD T0547 287 :SRNYTLREYANDVVFILKNIAE 1twiA 273 :KQIPTQKDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 1twiA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETP T0547 436 :VQERYLVNFSLFQSMPDFW 1twiA 328 :VTKWVMIDAGMNDMMRPAM T0547 456 :LEQNFPIMPLDRLD 1twiA 347 :YEAYHHIINCKVKN T0547 472 :PTRSASIWDITCDSDGEISYS 1twiA 361 :EKEVVSIAGGLCESSDVFGRD T0547 497 :LFLH 1twiA 382 :RELD T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 1twiA 386 :KVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 540 :INEKGYEVEGIIEAQSILD 1twiA 427 :LIRERETYADLIAKDIVPP Number of specific fragments extracted= 20 number of extra gaps= 0 total=7734 Will force an alignment to be made, even if fragment is small Number of alignments=328 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)I16 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)P461 because last residue in template chain is (1twiA)L448 T0547 17 :KNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1twiA 16 :LGNDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1twiA 74 :KEFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1twiA 132 :EEIIM T0547 146 :AAEMGHNI 1twiA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1twiA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1twiA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1twiA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1twiA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1twiA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1twiA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1twiA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 1twiA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETP T0547 345 :AENKLILKKQNPKLIDE 1twiA 328 :VTKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1twiA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1twiA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1twiA 413 :GRPRMVLTSKKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 19 number of extra gaps= 0 total=7753 Will force an alignment to be made, even if fragment is small Number of alignments=329 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)I16 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)P461 because last residue in template chain is (1twiA)L448 T0547 17 :KNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 16 :LGNDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 1twiA 75 :EFIVAYAYKANANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1twiA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1twiA 132 :EEIIM T0547 146 :AAEMGHNI 1twiA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1twiA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1twiA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1twiA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1twiA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1twiA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1twiA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1twiA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1twiA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1twiA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1twiA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1twiA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1twiA 413 :GRPRMVLTSKKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 19 number of extra gaps= 0 total=7772 Will force an alignment to be made, even if fragment is small Number of alignments=330 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)I16 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)P461 because last residue in template chain is (1twiA)L448 T0547 17 :KNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 16 :LGNDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLG 1twiA 76 :FIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1twiA 132 :EEIIM T0547 146 :AAEMGHNI 1twiA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1twiA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1twiA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1twiA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLE 1twiA 202 :IAMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1twiA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1twiA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNI 1twiA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1twiA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1twiA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1twiA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1twiA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1twiA 416 :RMVLTSKKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 19 number of extra gaps= 0 total=7791 Will force an alignment to be made, even if fragment is small Number of alignments=331 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)P461 because last residue in template chain is (1twiA)L448 T0547 9 :WGNENFIIKN 1twiA 16 :LGNDTVEIKD T0547 27 :KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 26 :GRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLGK 1twiA 76 :FIVAYAYKANANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1twiA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1twiA 132 :EEIIM T0547 146 :AAEMGHNI 1twiA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1twiA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1twiA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1twiA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLE 1twiA 202 :IAMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1twiA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1twiA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNI 1twiA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1twiA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1twiA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1twiA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1twiA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1twiA 413 :GRPRMVLTSKKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 20 number of extra gaps= 0 total=7811 Will force an alignment to be made, even if fragment is small Number of alignments=332 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1twiA)M15 T0547 9 :WGNENFIIKNGK 1twiA 16 :LGNDTVEIKDGR T0547 29 :PAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 28 :FFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLG 1twiA 76 :FIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1twiA 132 :EEIIM T0547 146 :AAEMGHNI 1twiA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1twiA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1twiA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1twiA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1twiA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1twiA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1twiA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNI 1twiA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1twiA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1twiA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1twiA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1twiA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :L 1twiA 415 :P T0547 475 :S 1twiA 416 :R T0547 537 :IISINEKGYEVEG 1twiA 417 :MVLTSKKGVFLIR T0547 582 :KLVNDKQK 1twiA 430 :ERETYADL T0547 601 :NDNGYLKSIGV 1twiA 438 :IAKDIVPPHLL Number of specific fragments extracted= 24 number of extra gaps= 0 total=7835 Will force an alignment to be made, even if fragment is small Number of alignments=333 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)P461 because last residue in template chain is (1twiA)L448 T0547 9 :WGNENFIIKNGKV 1twiA 16 :LGNDTVEIKDGRF T0547 30 :AIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 29 :FIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLGK 1twiA 76 :FIVAYAYKANANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1twiA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1twiA 132 :EEIIM T0547 146 :AAEMGHNI 1twiA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1twiA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1twiA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1twiA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1twiA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1twiA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1twiA 270 :YKDKQIP T0547 291 :TLREYANDVVFIL 1twiA 277 :TQKDLADAIINTM T0547 306 :IAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1twiA 290 :LKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1twiA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1twiA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1twiA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1twiA 413 :GRPRMVLTSKKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 20 number of extra gaps= 0 total=7855 Will force an alignment to be made, even if fragment is small Number of alignments=334 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 19 :GKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1twiA 18 :NDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1twiA 74 :KEFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1twiA 132 :EEIIM T0547 146 :AAEMGHNI 1twiA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1twiA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1twiA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1twiA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1twiA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1twiA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1twiA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1twiA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 1twiA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETP T0547 345 :AENKLILKKQNPKLIDE 1twiA 328 :VTKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1twiA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1twiA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 1twiA 413 :GRPRMVLTSKKGVFLIRERETYADLIAKDIVPPH Number of specific fragments extracted= 19 number of extra gaps= 0 total=7874 Will force an alignment to be made, even if fragment is small Number of alignments=335 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 9 :WGNEN 1twiA 16 :LGNDT T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 1twiA 75 :EFIVAYAYKANANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1twiA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1twiA 132 :EEIIM T0547 146 :AAEMGHNI 1twiA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1twiA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1twiA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1twiA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1twiA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1twiA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1twiA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1twiA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1twiA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1twiA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1twiA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1twiA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDF 1twiA 413 :GRPRMVLTSKKGVFLIRERETYADLIAK Number of specific fragments extracted= 20 number of extra gaps= 0 total=7894 Will force an alignment to be made, even if fragment is small Number of alignments=336 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 19 :GKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 18 :NDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLG 1twiA 76 :FIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1twiA 132 :EEIIM T0547 146 :AAEMGHNI 1twiA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1twiA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1twiA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1twiA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLE 1twiA 202 :IAMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1twiA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1twiA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNI 1twiA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1twiA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1twiA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1twiA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1twiA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLE 1twiA 416 :RMVLTSKKGVFLIRERETYADLIAKDIVP Number of specific fragments extracted= 19 number of extra gaps= 0 total=7913 Will force an alignment to be made, even if fragment is small Number of alignments=337 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 9 :WGNENFIIKN 1twiA 16 :LGNDTVEIKD T0547 27 :KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 26 :GRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLGK 1twiA 76 :FIVAYAYKANANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1twiA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1twiA 132 :EEIIM T0547 146 :AAEMGHNI 1twiA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1twiA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1twiA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1twiA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLE 1twiA 202 :IAMKAIKMALEMEYVN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 218 :VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1twiA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1twiA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNI 1twiA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1twiA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1twiA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1twiA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1twiA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1twiA 413 :GRPRMVLTSKKGVFLIRERETYADLIAKDIVPP Number of specific fragments extracted= 20 number of extra gaps= 0 total=7933 Will force an alignment to be made, even if fragment is small Number of alignments=338 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 12 :ENFIIKN 1twiA 19 :DTVEIKD T0547 27 :KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 26 :GRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLG 1twiA 76 :FIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1twiA 132 :EEIIM T0547 146 :AAEMGHNI 1twiA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1twiA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1twiA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1twiA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1twiA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1twiA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1twiA 270 :YKDKQIP T0547 291 :TLREYANDVVFILKNI 1twiA 277 :TQKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1twiA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1twiA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1twiA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1twiA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARG T0547 429 :L 1twiA 415 :P T0547 475 :S 1twiA 416 :R T0547 537 :IISINEKGYEVEG 1twiA 417 :MVLTSKKGVFLIR T0547 582 :KLVNDKQK 1twiA 430 :ERETYADL Number of specific fragments extracted= 23 number of extra gaps= 0 total=7956 Will force an alignment to be made, even if fragment is small Number of alignments=339 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 9 :WGNENFIIKNGKV 1twiA 16 :LGNDTVEIKDGRF T0547 30 :AIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 29 :FIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLGK 1twiA 76 :FIVAYAYKANANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1twiA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGNCKTK T0547 140 :INIGF 1twiA 132 :EEIIM T0547 146 :AAEMGHNI 1twiA 137 :GIEANIRA T0547 155 :LTIEGLNELEAIIDIAKE 1twiA 145 :FNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLH 1twiA 163 :LGETANVAFRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTST 1twiA 178 :NPKTHPKISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENKLL 1twiA 202 :IAMKAIKMALEMEYV T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 217 :NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEY 1twiA 255 :EIEDVNLGGGLGIPY T0547 282 :FKNEKSR 1twiA 270 :YKDKQIP T0547 291 :TLREYANDVVFIL 1twiA 277 :TQKDLADAIINTM T0547 306 :IAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 1twiA 290 :LKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV T0547 346 :ENKLILKKQNPKLIDE 1twiA 329 :TKWVMIDAGMNDMMRP T0547 362 :LYDLYKSIKPSNALE 1twiA 346 :MYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVD 1twiA 361 :EKEVVSIAGGLCESSDVFGRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1twiA 413 :GRPRMVLTSKKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 20 number of extra gaps= 0 total=7976 Will force an alignment to be made, even if fragment is small Number of alignments=340 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)P464 because last residue in template chain is (1twiA)L448 T0547 9 :WGNENFIIKNGKVCI 1twiA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1twiA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1twiA 74 :KEFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1twiA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1twiA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1twiA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1twiA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTSTE 1twiA 190 :KKNKFGLDVES T0547 211 :LIEAVNLLKENKLLEQFT 1twiA 203 :AMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1twiA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1twiA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1twiA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1twiA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1twiA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1twiA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 1twiA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKK T0547 440 :YLVNFSLFQSMPDFWGLEQNFPIM 1twiA 424 :GVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 20 number of extra gaps= 0 total=7996 Will force an alignment to be made, even if fragment is small Number of alignments=341 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)P464 because last residue in template chain is (1twiA)L448 T0547 9 :WGNENFIIKNGKVCI 1twiA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1twiA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 1twiA 75 :EFIVAYAYKANANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 1twiA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1twiA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1twiA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1twiA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1twiA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1twiA 190 :KKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLEQFT 1twiA 202 :IAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1twiA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1twiA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1twiA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1twiA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1twiA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGYV 1twiA 363 :EVVSIAGGLCESSDVFGRDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 438 :ERYLVNFSLFQSMPDFWGLEQNFPIM 1twiA 422 :KKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 20 number of extra gaps= 0 total=8016 Will force an alignment to be made, even if fragment is small Number of alignments=342 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)P464 because last residue in template chain is (1twiA)L448 T0547 9 :WGNENFIIKNGKVCI 1twiA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1twiA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1twiA 75 :EFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1twiA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1twiA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1twiA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1twiA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTS 1twiA 190 :KKNKFGLDV T0547 209 :TELIEAVNLLKENKLLEQFT 1twiA 201 :GIAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1twiA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1twiA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1twiA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1twiA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1twiA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1twiA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1twiA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKG T0547 441 :LVNFSLFQSMPDFWGLEQNFPIM 1twiA 425 :VFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 20 number of extra gaps= 0 total=8036 Will force an alignment to be made, even if fragment is small Number of alignments=343 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1twiA)M15 T0547 9 :WGNENFIIKNGKVCI 1twiA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1twiA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLGK 1twiA 76 :FIVAYAYKANANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 1twiA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1twiA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1twiA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1twiA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1twiA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1twiA 190 :KKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLEQFT 1twiA 202 :IAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1twiA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAE 1twiA 277 :TQKDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1twiA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1twiA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1twiA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGYV 1twiA 363 :EVVSIAGGLCESSDVFGRDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 438 :ERYLVNFSLFQSMPDFWGLEQNFPIM 1twiA 422 :KKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 20 number of extra gaps= 0 total=8056 Will force an alignment to be made, even if fragment is small Number of alignments=344 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)D469 because last residue in template chain is (1twiA)L448 T0547 9 :WGNENFIIKNGKVCI 1twiA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1twiA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLG 1twiA 76 :FIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1twiA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1twiA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1twiA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1twiA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1twiA 190 :KKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLEQFT 1twiA 202 :IAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1twiA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1twiA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1twiA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1twiA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1twiA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1twiA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 1twiA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 438 :ERYLVNFSLFQSMPDFWGLEQNF 1twiA 422 :KKGVFLIRERETYADLIAKDIVP T0547 466 :DRL 1twiA 445 :PHL Number of specific fragments extracted= 21 number of extra gaps= 0 total=8077 Will force an alignment to be made, even if fragment is small Number of alignments=345 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)P464 because last residue in template chain is (1twiA)L448 T0547 9 :WGNENFIIKNGKVCI 1twiA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1twiA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLGK 1twiA 76 :FIVAYAYKANANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 1twiA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1twiA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1twiA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1twiA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1twiA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1twiA 190 :KKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLEQFT 1twiA 202 :IAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1twiA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAE 1twiA 277 :TQKDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1twiA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1twiA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1twiA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGYV 1twiA 363 :EVVSIAGGLCESSDVFGRDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLT T0547 437 :QERYLVNFSLFQSMPDFWGLEQNFPIM 1twiA 421 :SKKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 20 number of extra gaps= 0 total=8097 Will force an alignment to be made, even if fragment is small Number of alignments=346 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 9 :WGNENFIIKNGKVCI 1twiA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1twiA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFG 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 1twiA 74 :KEFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1twiA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1twiA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1twiA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1twiA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTSTE 1twiA 190 :KKNKFGLDVES T0547 211 :LIEAVNLLKENKLLEQFT 1twiA 203 :AMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1twiA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1twiA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1twiA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1twiA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1twiA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1twiA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 1twiA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKK T0547 440 :YLVNFSLFQSMPDFWGLEQNFPI 1twiA 424 :GVFLIRERETYADLIAKDIVPPH Number of specific fragments extracted= 20 number of extra gaps= 0 total=8117 Will force an alignment to be made, even if fragment is small Number of alignments=347 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 9 :WGNENFIIKNGKVCI 1twiA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1twiA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 1twiA 75 :EFIVAYAYKANANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 1twiA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1twiA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1twiA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1twiA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1twiA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1twiA 190 :KKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLEQFT 1twiA 202 :IAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1twiA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1twiA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1twiA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1twiA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1twiA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGYV 1twiA 363 :EVVSIAGGLCESSDVFGRDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 438 :ERYLVNFSLFQSMPDFWGLEQNFP 1twiA 422 :KKGVFLIRERETYADLIAKDIVPP Number of specific fragments extracted= 20 number of extra gaps= 0 total=8137 Will force an alignment to be made, even if fragment is small Number of alignments=348 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 9 :WGNENFIIKNGKVCI 1twiA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1twiA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1twiA 75 :EFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1twiA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1twiA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1twiA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1twiA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTS 1twiA 190 :KKNKFGLDV T0547 209 :TELIEAVNLLKENKLLEQFT 1twiA 201 :GIAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1twiA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1twiA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1twiA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1twiA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1twiA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1twiA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 1twiA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKG T0547 441 :LVNFSLFQSMPDFWGLEQNFPI 1twiA 425 :VFLIRERETYADLIAKDIVPPH Number of specific fragments extracted= 20 number of extra gaps= 0 total=8157 Will force an alignment to be made, even if fragment is small Number of alignments=349 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 9 :WGNENFIIKNGKVCI 1twiA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1twiA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLGK 1twiA 76 :FIVAYAYKANANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 1twiA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1twiA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1twiA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1twiA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1twiA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1twiA 190 :KKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLEQFT 1twiA 202 :IAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1twiA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAE 1twiA 277 :TQKDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1twiA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1twiA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1twiA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGYV 1twiA 363 :EVVSIAGGLCESSDVFGRDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 438 :ERYLVNFSLFQSMPDFWGLEQNFP 1twiA 422 :KKGVFLIRERETYADLIAKDIVPP Number of specific fragments extracted= 20 number of extra gaps= 0 total=8177 Will force an alignment to be made, even if fragment is small Number of alignments=350 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 9 :WGNENFIIKNGKVCI 1twiA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1twiA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLG 1twiA 76 :FIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1twiA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1twiA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1twiA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1twiA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1twiA 190 :KKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLEQFT 1twiA 202 :IAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1twiA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAEQK 1twiA 277 :TQKDLADAIINTMLKYKDKV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1twiA 297 :EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1twiA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1twiA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGY 1twiA 363 :EVVSIAGGLCESSDVFGRDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 1twiA 383 :ELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS T0547 438 :ERYLVNFSLFQSMPDFWGLEQN 1twiA 422 :KKGVFLIRERETYADLIAKDIV T0547 465 :LD 1twiA 444 :PP Number of specific fragments extracted= 21 number of extra gaps= 0 total=8198 Will force an alignment to be made, even if fragment is small Number of alignments=351 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 9 :WGNENFIIKNGKVCI 1twiA 16 :LGNDTVEIKDGRFFI T0547 27 :KKPAIIDIVKE 1twiA 31 :DGYDAIELAEK T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYK 1twiA 42 :FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKE T0547 79 :FNAVYPLKVNQYPGFVKNLVKLGK 1twiA 76 :FIVAYAYKANANLAITRLLAKLGC T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 1twiA 100 :GADVVSGGELYIAKLSNVPSKKIVFNGN T0547 135 :KDRELINIGF 1twiA 129 :KTKEEIIMGI T0547 148 :EMGHNIT 1twiA 139 :EANIRAF T0547 156 :TIEGLNELEAIIDIAKE 1twiA 146 :NVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 1twiA 163 :LGETANVAFRINPNVNPKTHPKISTG T0547 200 :INSKFGLTST 1twiA 190 :KKNKFGLDVE T0547 210 :ELIEAVNLLKENKLLEQFT 1twiA 202 :IAMKAIKMALEMEYVNVVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1twiA 221 :VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI T0547 265 :NLKAINLGGGLAVEYSQFKNEK 1twiA 255 :EIEDVNLGGGLGIPYYKDKQIP T0547 291 :TLREYANDVVFILKNIAE 1twiA 277 :TQKDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 1twiA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTK T0547 348 :KLILKK 1twiA 331 :WVMIDA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1twiA 338 :MNDMMRPAMYEAYHHIINCKVKN T0547 377 :YLHDSIDHLESILTLFDLGYV 1twiA 363 :EVVSIAGGLCESSDVFGRDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 1twiA 384 :LDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLT T0547 437 :QERYLVNFSLFQSMPDFWGLEQNFPI 1twiA 421 :SKKGVFLIRERETYADLIAKDIVPPH Number of specific fragments extracted= 20 number of extra gaps= 0 total=8218 Will force an alignment to be made, even if fragment is small Number of alignments=352 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)I16 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)P464 because last residue in template chain is (1twiA)L448 T0547 17 :KNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEF 1twiA 16 :LGNDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEET T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 1twiA 73 :GKEFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1twiA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1twiA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1twiA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1twiA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1twiA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1twiA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNI 1twiA 279 :KDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALE 1twiA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1twiA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIM 1twiA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKDIVPPHL Number of specific fragments extracted= 13 number of extra gaps= 0 total=8231 Will force an alignment to be made, even if fragment is small Number of alignments=353 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)D3 because first residue in template chain is (1twiA)M15 T0547 4 :YGID 1twiA 16 :LGND T0547 21 :VCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 20 :TVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1twiA 75 :EFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1twiA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1twiA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTST 1twiA 184 :KISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENK 1twiA 202 :IAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1twiA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1twiA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNIAE 1twiA 279 :KDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNAL 1twiA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVK T0547 377 :YLHDSIDHLESILTLFDLGYVDLQDR 1twiA 360 :NEKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 1twiA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKD T0547 462 :IMP 1twiA 442 :IVP T0547 521 :EVL 1twiA 445 :PHL Number of specific fragments extracted= 16 number of extra gaps= 0 total=8247 Will force an alignment to be made, even if fragment is small Number of alignments=354 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)D3 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)K589 because last residue in template chain is (1twiA)L448 T0547 4 :YGI 1twiA 16 :LGN T0547 20 :KVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARK 1twiA 19 :DTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEE T0547 74 :GYKGGFNAVYPLKVNQYPGFVKNLVKLG 1twiA 71 :ETGKEFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1twiA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1twiA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1twiA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1twiA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1twiA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 1twiA 253 :GIEIEDVNLGGGLGIPYYKDKQIPT T0547 292 :LREYANDVVFILKNIAE 1twiA 278 :QKDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALE 1twiA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1twiA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 1twiA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKDIV T0547 585 :NDKQ 1twiA 444 :PPHL Number of specific fragments extracted= 15 number of extra gaps= 0 total=8262 Will force an alignment to be made, even if fragment is small Number of alignments=355 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)D3 because first residue in template chain is (1twiA)M15 T0547 4 :YGID 1twiA 16 :LGND T0547 21 :VCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 20 :TVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1twiA 75 :EFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1twiA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1twiA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1twiA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1twiA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1twiA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1twiA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNIAE 1twiA 279 :KDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1twiA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC T0547 375 :L 1twiA 359 :K T0547 377 :YLHDSIDHLESILTLFDLGYVDLQDR 1twiA 360 :NEKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1twiA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKDIVP T0547 502 :VDV 1twiA 445 :PHL Number of specific fragments extracted= 16 number of extra gaps= 0 total=8278 Will force an alignment to be made, even if fragment is small Number of alignments=356 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)D3 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)H500 because last residue in template chain is (1twiA)L448 T0547 4 :YGIDI 1twiA 16 :LGNDT T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1twiA 75 :EFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1twiA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1twiA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1twiA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1twiA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1twiA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 1twiA 253 :GIEIEDVNLGGGLGIPYYKDKQIPT T0547 292 :LREYANDVVFILKNI 1twiA 278 :QKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1twiA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC T0547 376 :E 1twiA 360 :N T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1twiA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 1twiA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKD T0547 493 :KDKPL 1twiA 442 :IVPPH T0547 499 :L 1twiA 447 :L Number of specific fragments extracted= 17 number of extra gaps= 0 total=8295 Will force an alignment to be made, even if fragment is small Number of alignments=357 # 1twiA read from all-align.a2m # found chain 1twiA in template set Warning: unaligning (T0547)D3 because first residue in template chain is (1twiA)M15 Warning: unaligning (T0547)L468 because last residue in template chain is (1twiA)L448 T0547 4 :YGID 1twiA 16 :LGND T0547 21 :VCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 20 :TVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1twiA 75 :EFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1twiA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1twiA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1twiA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1twiA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1twiA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1twiA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNI 1twiA 279 :KDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1twiA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC T0547 377 :YLHDSIDHLESILTLFDLGYVDLQDR 1twiA 360 :NEKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 1twiA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKD T0547 462 :IMPLDR 1twiA 442 :IVPPHL Number of specific fragments extracted= 15 number of extra gaps= 0 total=8310 Will force an alignment to be made, even if fragment is small Number of alignments=358 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 19 :GKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEF 1twiA 18 :NDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEET T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 1twiA 73 :GKEFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1twiA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1twiA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1twiA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1twiA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1twiA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1twiA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNI 1twiA 279 :KDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALE 1twiA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1twiA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPI 1twiA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKDIVPPH Number of specific fragments extracted= 13 number of extra gaps= 0 total=8323 Will force an alignment to be made, even if fragment is small Number of alignments=359 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 23 :INYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 22 :EIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1twiA 75 :EFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1twiA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1twiA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTST 1twiA 184 :KISTGLKKNKFGLDVE T0547 210 :ELIEAVNLLKENK 1twiA 202 :IAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1twiA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1twiA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNIAE 1twiA 279 :KDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNAL 1twiA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVK T0547 377 :YLHDSIDHLESILTLFDLGYVDLQDR 1twiA 360 :NEKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGL 1twiA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAK Number of specific fragments extracted= 13 number of extra gaps= 0 total=8336 Will force an alignment to be made, even if fragment is small Number of alignments=360 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 21 :VCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARK 1twiA 20 :TVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEE T0547 74 :GYKGGFNAVYPLKVNQYPGFVKNLVKLG 1twiA 71 :ETGKEFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1twiA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1twiA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1twiA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1twiA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1twiA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 1twiA 253 :GIEIEDVNLGGGLGIPYYKDKQIPT T0547 292 :LREYANDVVFILKNIAE 1twiA 278 :QKDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALE 1twiA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVKN T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1twiA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 1twiA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKDI Number of specific fragments extracted= 13 number of extra gaps= 0 total=8349 Will force an alignment to be made, even if fragment is small Number of alignments=361 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1twiA 75 :EFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1twiA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1twiA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1twiA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1twiA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1twiA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1twiA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNIAE 1twiA 279 :KDLADAIINTMLKYKD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1twiA 295 :KVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC T0547 375 :L 1twiA 359 :K T0547 377 :YLHDSIDHLESILTLFDLGYVDLQDR 1twiA 360 :NEKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNF 1twiA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKDIVP Number of specific fragments extracted= 14 number of extra gaps= 0 total=8363 Will force an alignment to be made, even if fragment is small Number of alignments=362 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1twiA 75 :EFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1twiA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1twiA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1twiA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1twiA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1twiA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 1twiA 253 :GIEIEDVNLGGGLGIPYYKDKQIPT T0547 292 :LREYANDVVFILKNI 1twiA 278 :QKDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1twiA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC T0547 376 :E 1twiA 360 :N T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 1twiA 361 :EKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGL 1twiA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAK Number of specific fragments extracted= 14 number of extra gaps= 0 total=8377 Will force an alignment to be made, even if fragment is small Number of alignments=363 # 1twiA read from all-align.a2m # found chain 1twiA in template set T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY 1twiA 21 :VEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGK T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 1twiA 75 :EFIVAYAYKANANLAITRLLAKLG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 1twiA 99 :CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIR T0547 154 :TLTIEGLNELEAIIDIAKE 1twiA 144 :AFNVDSISELILINETAKE T0547 174 :FKPKPNIGLRVRLHSAGVGI 1twiA 163 :LGETANVAFRINPNVNPKTH T0547 194 :WAKSGGINSKFGLTS 1twiA 184 :KISTGLKKNKFGLDV T0547 209 :TELIEAVNLLKENK 1twiA 201 :GIAMKAIKMALEME T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 1twiA 215 :YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 1twiA 253 :GIEIEDVNLGGGLGIPYYKDKQIPTQ T0547 293 :REYANDVVFILKNI 1twiA 279 :KDLADAIINTMLKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 1twiA 293 :KDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC T0547 377 :YLHDSIDHLESILTLFDLGYVDLQDR 1twiA 360 :NEKEVVSIAGGLCESSDVFGRDRELD T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 1twiA 387 :VEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAKDIV T0547 464 :P 1twiA 444 :P Number of specific fragments extracted= 14 number of extra gaps= 0 total=8391 Will force an alignment to be made, even if fragment is small Number of alignments=364 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)R50 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 51 :FPH 1vfsA 4 :TPT T0547 54 :LIQKQIENIYGNFNKARKEFG 1vfsA 9 :YAEIDLDAVRANVRALRARAP T0547 78 :GFNAVYPLKVN 1vfsA 30 :RSALMAVVKSN T0547 89 :QYPGFVKNLVKLGKD 1vfsA 45 :GAVPCARAAQEAGAA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRELI 1vfsA 60 :WLGTATPEEALELRAAGIQGRIMCWLWTPGGPWR T0547 145 :IAAEM 1vfsA 94 :EAIET T0547 152 :NITLTIEGLNELEAIIDIAKERFKP 1vfsA 99 :DIDVSVSGMWALDEVRAAARAAGRT T0547 178 :PNIG 1vfsA 124 :ARIQ T0547 185 :RLHSA 1vfsA 131 :DTGLG T0547 203 :KFGLTSTELIEAVN 1vfsA 136 :RNGCQPADWAELVG T0547 217 :LLKENKLLE 1vfsA 153 :AAQAEGTVQ T0547 227 :FTMIHFHLGSQI 1vfsA 162 :VTGVWSHFACAD T0547 239 :TEIHPLKKALNEAGNIYTELRKMGA 1vfsA 175 :PGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEYSQ 1vfsA 200 :DPEVRHIANSPATLTLP T0547 284 :NE 1vfsA 217 :ET T0547 289 :NYTLREYANDVVFILK 1vfsA 219 :HFDLVRTGLAVYGVSP T0547 312 :DLEPDIFIESGRFV 1vfsA 235 :SPELGTPAQLGLRP T0547 329 :HAVLIAPVLELFS 1vfsA 249 :AMTLRASLALVKT T0547 344 :YAENKLILKKQNPKLIDELYDLY 1vfsA 262 :VPAGHGVSYGHHYVTESETHLAL T0547 564 :DYDIHAIMDILNERISNSKLVNDKQKK 1vfsA 329 :LAEAGDEAVILGDAERGEPTAEDWAQA T0547 591 :HILGELYLFLNDNGYLKSI 1vfsA 358 :TIAYEIVTRIGGRVPRVYL T0547 610 :G 1vfsA 384 :H Number of specific fragments extracted= 22 number of extra gaps= 0 total=8413 Will force an alignment to be made, even if fragment is small Number of alignments=365 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 57 :KQIENIYGNFNKARKEFG 1vfsA 12 :IDLDAVRANVRALRARAP T0547 78 :GFNAVYPLKVN 1vfsA 30 :RSALMAVVKSN T0547 89 :QYPGFVKNLVKLGKD 1vfsA 45 :GAVPCARAAQEAGAA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRELI 1vfsA 60 :WLGTATPEEALELRAAGIQGRIMCWLWTPGGPWR T0547 145 :IAAEM 1vfsA 94 :EAIET T0547 152 :NITLTIEGLNELEAIIDIAKERFKP 1vfsA 99 :DIDVSVSGMWALDEVRAAARAAGRT T0547 178 :PNIG 1vfsA 124 :ARIQ T0547 185 :RLHSA 1vfsA 131 :DTGLG T0547 203 :KFGLTSTELIEAVN 1vfsA 136 :RNGCQPADWAELVG T0547 217 :LLKENKLLE 1vfsA 153 :AAQAEGTVQ T0547 227 :FTMIHFHLGSQI 1vfsA 162 :VTGVWSHFACAD T0547 239 :TEIHPLKKALNEAGNIYTELRKMGA 1vfsA 175 :PGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEYSQ 1vfsA 200 :DPEVRHIANSPATLTLP T0547 284 :NE 1vfsA 217 :ET T0547 289 :NYTLREYANDVVFILK 1vfsA 219 :HFDLVRTGLAVYGVSP T0547 312 :DLEPDIFIESGRFV 1vfsA 235 :SPELGTPAQLGLRP T0547 329 :HAVLIAPVLELFS 1vfsA 249 :AMTLRASLALVKT T0547 344 :YAENKLILKKQNPKLIDELYDLYKSI 1vfsA 262 :VPAGHGVSYGHHYVTESETHLALVPA Number of specific fragments extracted= 18 number of extra gaps= 0 total=8431 Will force an alignment to be made, even if fragment is small Number of alignments=366 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 52 :P 1vfsA 5 :P T0547 53 :HLIQKQIENIYGNFNKARKEFG 1vfsA 8 :VYAEIDLDAVRANVRALRARAP T0547 78 :GFNAVYPLKVNQ 1vfsA 30 :RSALMAVVKSNA T0547 90 :YPGFVKNLVKLG 1vfsA 46 :AVPCARAAQEAG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1vfsA 59 :AWLGTATPEEALELRAAGIQG T0547 128 :PITVNGFKDRE 1vfsA 80 :RIMCWLWTPGG T0547 141 :NIGFIAAE 1vfsA 91 :PWREAIET T0547 152 :NITLTIEGLNELEAIIDIAKER 1vfsA 99 :DIDVSVSGMWALDEVRAAARAA T0547 175 :KPKPNIG 1vfsA 121 :GRTARIQ T0547 185 :RLHS 1vfsA 131 :DTGL T0547 202 :SKFGLTSTELIEAVNLLKENKLLE 1vfsA 135 :GRNGCQPADWAELVGAAVAAQAEG T0547 226 :QFTMIHFHLG 1vfsA 161 :QVTGVWSHFA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 172 :ADEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEYS 1vfsA 200 :DPEVRHIANSPATLTL T0547 290 :YTLREYANDVVFILK 1vfsA 220 :FDLVRTGLAVYGVSP T0547 312 :DLEPDIFIESGRFV 1vfsA 235 :SPELGTPAQLGLRP T0547 329 :HAVLIAPVLELFSQE 1vfsA 249 :AMTLRASLALVKTVP T0547 371 :PSNALEYLHDSIDHLESILTLFDLGYVDL 1vfsA 264 :AGHGVSYGHHYVTESETHLALVPAGYADG T0547 541 :NEKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKLVNDKQ 1vfsA 306 :AGKIRRAAGRIAMDQFVVDLGEDLAEAGDEAVILGDAERGEPTAEDWA T0547 589 :KKHILGELYLFLNDNGYLKSIGV 1vfsA 356 :AHTIAYEIVTRIGGRVPRVYLGG Number of specific fragments extracted= 20 number of extra gaps= 0 total=8451 Will force an alignment to be made, even if fragment is small Number of alignments=367 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 59 :IENIYGNFNKARKEFG 1vfsA 14 :LDAVRANVRALRARAP T0547 78 :GFNAVYPLKVNQ 1vfsA 30 :RSALMAVVKSNA T0547 90 :YPGFVKNLVKLG 1vfsA 46 :AVPCARAAQEAG T0547 106 :YGLEAGSKAELLLAMAYNNEG 1vfsA 59 :AWLGTATPEEALELRAAGIQG T0547 128 :PITVNGFKDRE 1vfsA 80 :RIMCWLWTPGG T0547 141 :NIGFIAAE 1vfsA 91 :PWREAIET T0547 152 :NITLTIEGLNELEAIIDIAKER 1vfsA 99 :DIDVSVSGMWALDEVRAAARAA T0547 175 :KPKPNIG 1vfsA 121 :GRTARIQ T0547 185 :RLHS 1vfsA 131 :DTGL T0547 202 :SKFGLTSTELIEAVNLLKENKLLE 1vfsA 135 :GRNGCQPADWAELVGAAVAAQAEG T0547 226 :QFTMIHFHLG 1vfsA 161 :QVTGVWSHFA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 172 :ADEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEYS 1vfsA 200 :DPEVRHIANSPATLTL T0547 290 :YTLREYANDVVFILK 1vfsA 220 :FDLVRTGLAVYGVSP T0547 312 :DLEPDIFIESGRFV 1vfsA 235 :SPELGTPAQLGLRP T0547 329 :HAVLIAPVLELFSQE 1vfsA 249 :AMTLRASLALVKTVP T0547 344 :YAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSID 1vfsA 270 :YGHHYVTESETHLALVPAGYADGIPRNASGRGPVLVAGKI T0547 384 :HLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLL 1vfsA 331 :EAGDEAVILGDAERGEPTAEDWAQAAHTIAYEIVTRI Number of specific fragments extracted= 18 number of extra gaps= 0 total=8469 Will force an alignment to be made, even if fragment is small Number of alignments=368 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 2 :M 1vfsA 4 :T T0547 25 :YEKKPAIID 1vfsA 5 :PTRVYAEID T0547 60 :ENIYGNFNKARKEF 1vfsA 15 :DAVRANVRALRARA T0547 77 :GGFNAVYPLKVN 1vfsA 29 :PRSALMAVVKSN T0547 89 :QYPGFVKNLVKLGKDY 1vfsA 45 :GAVPCARAAQEAGAAW T0547 118 :LAMAYNNEGAPITVNGFKDRELINIGFI 1vfsA 61 :LGTATPEEALELRAAGIQGRIMCWLWTP T0547 146 :AAEMGHNITLTIEGLNELEAIIDIAKE 1vfsA 93 :REAIETDIDVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHS 1vfsA 131 :DTGL T0547 202 :SKFGLTSTELIEAVN 1vfsA 135 :GRNGCQPADWAELVG T0547 217 :LLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 153 :AAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEYSQ 1vfsA 200 :DPEVRHIANSPATLTLP T0547 289 :NYTLREYANDVVF 1vfsA 219 :HFDLVRTGLAVYG T0547 319 :IESGRFVAANHAVLIAPVLELFSQEY 1vfsA 232 :VSPSPELGTPAQLGLRPAMTLRASLA T0547 372 :SNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQN 1vfsA 265 :GHGVSYGHHYVTESETHLALVPAGYADGIPRNASGRGPVLVAGKIRRAAGRIAM T0547 548 :EGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKLVND 1vfsA 344 :RGEPTAEDWAQAAHTIAYEIVTRIGGRVPRVYLGGLEHH Number of specific fragments extracted= 16 number of extra gaps= 0 total=8485 Will force an alignment to be made, even if fragment is small Number of alignments=369 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 101 :GKDYNYGLEAGSKAELLLA 1vfsA 37 :VKSNAYGHGAVPCARAAQE T0547 120 :MAYNNEGAPITVNGFKDRELINIGFIAAE 1vfsA 63 :TATPEEALELRAAGIQGRIMCWLWTPGGP T0547 149 :MGHNITLTIEGLNELEAIIDIAKE 1vfsA 96 :IETDIDVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHS 1vfsA 131 :DTGL T0547 202 :SKFGLTSTELIEAVN 1vfsA 135 :GRNGCQPADWAELVG T0547 217 :LLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKN 1vfsA 153 :AAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDP Number of specific fragments extracted= 7 number of extra gaps= 0 total=8492 Will force an alignment to be made, even if fragment is small Number of alignments=370 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 Warning: unaligning (T0547)D503 because last residue in template chain is (1vfsA)H385 T0547 45 :GPLLLR 1vfsA 4 :TPTRVY T0547 51 :FPHLIQKQIENIYGNF 1vfsA 13 :DLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVNQY 1vfsA 29 :PRSALMAVVKSNAY T0547 91 :PGFVKNLVKLGK 1vfsA 47 :VPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1vfsA 59 :AWLGTATPEEALELRAAGIQGR T0547 129 :ITVNG 1vfsA 81 :IMCWL T0547 135 :K 1vfsA 86 :W T0547 137 :RELINIGF 1vfsA 87 :TPGGPWRE T0547 146 :AAEMGHN 1vfsA 95 :AIETDID T0547 155 :LTIEGLNELEAIIDIAKE 1vfsA 102 :VSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLH 1vfsA 131 :DTG T0547 188 :S 1vfsA 135 :G T0547 190 :GVGIWA 1vfsA 136 :RNGCQP T0547 206 :LTSTELIEAVNLLKENKLL 1vfsA 142 :ADWAELVGAAVAAQAEGTV T0547 226 :QFTMIHFHLGS 1vfsA 161 :QVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKA 1vfsA 200 :DPEV T0547 278 :EYS 1vfsA 204 :RHI T0547 282 :FKNEKSR 1vfsA 207 :ANSPATL T0547 291 :TLREYANDVVFILKNIAEQK 1vfsA 214 :TLPETHFDLVRTGLAVYGVS T0547 313 :LEPDIFI 1vfsA 234 :PSPELGT T0547 321 :SGRFVAANHAVLIAPVLELFSQEYAE 1vfsA 241 :PAQLGLRPAMTLRASLALVKTVPAGH T0547 350 :ILKKQNPKLIDE 1vfsA 267 :GVSYGHHYVTES T0547 364 :DLYKSIKPSNALE 1vfsA 279 :ETHLALVPAGYAD T0547 377 :YLHDSIDHLESILTLFDLGYVD 1vfsA 298 :SGRGPVLVAGKIRRAAGRIAMD T0547 399 :LQ 1vfsA 325 :LG T0547 401 :DRSNAEILTHLITKKAILL 1vfsA 329 :LAEAGDEAVILGDAERGEP T0547 450 :MPDFWGL 1vfsA 348 :TAEDWAQ T0547 473 :TRSASIWDITCDSDGEISYSKDKPLFLHDV 1vfsA 355 :AAHTIAYEIVTRIGGRVPRVYLGGLEHHHH Number of specific fragments extracted= 30 number of extra gaps= 0 total=8522 Will force an alignment to be made, even if fragment is small Number of alignments=371 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 Warning: unaligning (T0547)G610 because last residue in template chain is (1vfsA)H385 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVNQY 1vfsA 29 :PRSALMAVVKSNAY T0547 91 :PGFVKNLVKLGK 1vfsA 47 :VPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1vfsA 59 :AWLGTATPEEALELRAAGIQG T0547 128 :PITVNGFKDRE 1vfsA 80 :RIMCWLWTPGG T0547 141 :NIGF 1vfsA 91 :PWRE T0547 146 :AAEMGH 1vfsA 95 :AIETDI T0547 153 :I 1vfsA 101 :D T0547 155 :LTIEGLNELEAIIDIAKE 1vfsA 102 :VSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLH 1vfsA 131 :DTG T0547 188 :S 1vfsA 135 :G T0547 203 :KFGLTST 1vfsA 136 :RNGCQPA T0547 210 :ELIEAVNLLKENKLL 1vfsA 146 :ELVGAAVAAQAEGTV T0547 226 :QFTMIHFHLGSQI 1vfsA 161 :QVTGVWSHFACAD T0547 239 :TEIHPLKKALNEAGNIYTELRKMGA 1vfsA 175 :PGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEY 1vfsA 200 :DPEVRHIANSPATLT T0547 282 :FKNEKSRNYT 1vfsA 215 :LPETHFDLVR T0547 306 :IAEQKKDLEP 1vfsA 226 :GLAVYGVSPS T0547 316 :DIFIESGR 1vfsA 239 :GTPAQLGL T0547 327 :ANHAVLIAPVLELFSQ 1vfsA 247 :RPAMTLRASLALVKTV T0547 343 :EYAENKLILKKQNPKLIDE 1vfsA 277 :ESETHLALVPAGYADGIPR T0547 362 :LYD 1vfsA 297 :ASG T0547 366 :YK 1vfsA 300 :RG T0547 369 :IKPSN 1vfsA 302 :PVLVA T0547 379 :HDSIDHLESILT 1vfsA 307 :GKIRRAAGRIAM T0547 393 :DLGYVD 1vfsA 319 :DQFVVD T0547 399 :LQDRSNAEILTHLITKKAILLLG 1vfsA 327 :EDLAEAGDEAVILGDAERGEPTA T0547 434 :DEVQERY 1vfsA 350 :EDWAQAA T0547 449 :SMPDFWGLEQNFPIMP 1vfsA 357 :HTIAYEIVTRIGGRVP T0547 490 :SYSKDKP 1vfsA 373 :RVYLGGL T0547 608 :SI 1vfsA 383 :HH Number of specific fragments extracted= 33 number of extra gaps= 0 total=8555 Will force an alignment to be made, even if fragment is small Number of alignments=372 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 Warning: unaligning (T0547)I573 because last residue in template chain is (1vfsA)H385 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVN 1vfsA 29 :PRSALMAVVKSN T0547 89 :QYPGFVKNLVKLGK 1vfsA 45 :GAVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1vfsA 59 :AWLGTATPEEALELRAAGIQG T0547 128 :PITVNGFKDR 1vfsA 80 :RIMCWLWTPG T0547 140 :INIGF 1vfsA 90 :GPWRE T0547 146 :AAEMG 1vfsA 95 :AIETD T0547 153 :ITLTIEGLNELEAIIDIAKE 1vfsA 100 :IDVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLH 1vfsA 131 :DTG T0547 188 :S 1vfsA 135 :G T0547 203 :KFGLTSTELIEAVNLLK 1vfsA 136 :RNGCQPADWAELVGAAV T0547 220 :ENKLLE 1vfsA 156 :AEGTVQ T0547 227 :FTMIHFHLGS 1vfsA 162 :VTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEY 1vfsA 200 :DPEVRHIANSPATLT T0547 291 :TLREYANDV 1vfsA 215 :LPETHFDLV T0547 300 :VFILKNIA 1vfsA 226 :GLAVYGVS T0547 311 :KDLEPDIFIESGR 1vfsA 234 :PSPELGTPAQLGL T0547 327 :ANHAVLIAPVLELFSQ 1vfsA 247 :RPAMTLRASLALVKTV T0547 343 :EYAENKLILK 1vfsA 277 :ESETHLALVP T0547 353 :KQNPKLIDELYD 1vfsA 288 :GYADGIPRNASG T0547 376 :E 1vfsA 300 :R T0547 377 :YLHDSIDHLESILT 1vfsA 305 :VAGKIRRAAGRIAM T0547 393 :DLGYVD 1vfsA 319 :DQFVVD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1vfsA 327 :EDLAEAGDEAVILGDAERGEPTAEDWA T0547 426 :PADLLAIQDEVQERYLV 1vfsA 357 :HTIAYEIVTRIGGRVPR T0547 463 :M 1vfsA 374 :V T0547 492 :SKDKP 1vfsA 375 :YLGGL T0547 568 :HAIMD 1vfsA 380 :EHHHH Number of specific fragments extracted= 31 number of extra gaps= 0 total=8586 Will force an alignment to be made, even if fragment is small Number of alignments=373 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 Warning: unaligning (T0547)G610 because last residue in template chain is (1vfsA)H385 T0547 45 :GPL 1vfsA 4 :TPT T0547 48 :LLRFPHLIQKQIENIYGNF 1vfsA 10 :AEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVN 1vfsA 29 :PRSALMAVVKSN T0547 89 :QYPGFVKNLVKLGK 1vfsA 45 :GAVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1vfsA 59 :AWLGTATPEEALELRAAGIQGR T0547 129 :ITVNGFKDRE 1vfsA 81 :IMCWLWTPGG T0547 141 :NIGF 1vfsA 91 :PWRE T0547 146 :AAEMGH 1vfsA 95 :AIETDI T0547 153 :I 1vfsA 101 :D T0547 155 :LTIEGLNELEAIIDIAKE 1vfsA 102 :VSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLH 1vfsA 131 :DTG T0547 202 :SKFGLTSTELIEAVN 1vfsA 135 :GRNGCQPADWAELVG T0547 217 :LLKENKLLE 1vfsA 153 :AAQAEGTVQ T0547 227 :FTMIHFHLGS 1vfsA 162 :VTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEY 1vfsA 200 :DPEVRHIANSPATLT T0547 302 :ILKNIA 1vfsA 215 :LPETHF T0547 308 :EQKKDLEP 1vfsA 228 :AVYGVSPS T0547 316 :DIFIESGRF 1vfsA 239 :GTPAQLGLR T0547 328 :NHAVLIAPVLELFSQEY 1vfsA 248 :PAMTLRASLALVKTVPA T0547 348 :KLILKKQNPKLIDE 1vfsA 265 :GHGVSYGHHYVTES T0547 362 :LYDLYKSIK 1vfsA 280 :THLALVPAG T0547 374 :ALE 1vfsA 289 :YAD T0547 381 :SIDHLESILT 1vfsA 309 :IRRAAGRIAM T0547 393 :DLGYVD 1vfsA 319 :DQFVVD T0547 399 :LQDRSNAEILTHLITKKAILLLGD 1vfsA 327 :EDLAEAGDEAVILGDAERGEPTAE T0547 449 :SMPDFW 1vfsA 351 :DWAQAA T0547 553 :AQSILDTLEDLDY 1vfsA 357 :HTIAYEIVTRIGG T0547 566 :DIHAI 1vfsA 379 :LEHHH T0547 609 :I 1vfsA 384 :H Number of specific fragments extracted= 31 number of extra gaps= 0 total=8617 Will force an alignment to be made, even if fragment is small Number of alignments=374 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 Warning: unaligning (T0547)V502 because last residue in template chain is (1vfsA)H385 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVN 1vfsA 29 :PRSALMAVVKSN T0547 89 :QYPGFVKNLVKLGK 1vfsA 45 :GAVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGFKDR 1vfsA 79 :GRIMCWLWTPG T0547 140 :INIGF 1vfsA 90 :GPWRE T0547 146 :AAEMGH 1vfsA 95 :AIETDI T0547 153 :I 1vfsA 101 :D T0547 155 :LTIEGLNELEAIIDIAKE 1vfsA 102 :VSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLH 1vfsA 131 :DTG T0547 188 :S 1vfsA 135 :G T0547 203 :KFGLTSTELIEAVNLLK 1vfsA 136 :RNGCQPADWAELVGAAV T0547 220 :ENKLL 1vfsA 156 :AEGTV T0547 226 :QFTMIHFHLGS 1vfsA 161 :QVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEY 1vfsA 200 :DPEVRHIANSPATLT T0547 282 :FKNEKSR 1vfsA 215 :LPETHFD T0547 318 :FIESGRFVAA 1vfsA 222 :LVRTGLAVYG T0547 328 :NHAVLIAPVLELFSQ 1vfsA 248 :PAMTLRASLALVKTV T0547 343 :EYAENKLILK 1vfsA 277 :ESETHLALVP T0547 353 :KQ 1vfsA 291 :DG T0547 358 :LIDELYD 1vfsA 293 :IPRNASG T0547 376 :E 1vfsA 300 :R T0547 377 :YLHDSIDHLESILT 1vfsA 305 :VAGKIRRAAGRIAM T0547 393 :DLGYVD 1vfsA 319 :DQFVVD T0547 399 :LQDRSNAEILTHLITKKA 1vfsA 327 :EDLAEAGDEAVILGDAER T0547 426 :PAD 1vfsA 345 :GEP T0547 429 :LLAIQDEVQERYLVN 1vfsA 349 :AEDWAQAAHTIAYEI T0547 453 :FWGLEQNFPIM 1vfsA 364 :VTRIGGRVPRV T0547 492 :SKDKPLFLHD 1vfsA 375 :YLGGLEHHHH Number of specific fragments extracted= 32 number of extra gaps= 0 total=8649 Will force an alignment to be made, even if fragment is small Number of alignments=375 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 Warning: unaligning (T0547)V502 because last residue in template chain is (1vfsA)H385 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVN 1vfsA 29 :PRSALMAVVKSN T0547 89 :QYPGFVKNLVKLGK 1vfsA 45 :GAVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1vfsA 59 :AWLGTATPEEALELRAAGIQG T0547 128 :PITVNGFKDRE 1vfsA 80 :RIMCWLWTPGG T0547 141 :NIGF 1vfsA 91 :PWRE T0547 146 :AAEMGH 1vfsA 95 :AIETDI T0547 153 :I 1vfsA 101 :D T0547 155 :LTIEGLNELEAIIDIAKE 1vfsA 102 :VSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLH 1vfsA 131 :DTG T0547 202 :SKFGLTSTELIEAVN 1vfsA 135 :GRNGCQPADWAELVG T0547 217 :LLKENKLL 1vfsA 153 :AAQAEGTV T0547 226 :QFTMIHFHLGS 1vfsA 161 :QVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEY 1vfsA 200 :DPEVRHIANSPATLT T0547 280 :SQFKNEKSR 1vfsA 227 :LAVYGVSPS T0547 313 :LEPDIFIESGR 1vfsA 236 :PELGTPAQLGL T0547 327 :ANHAVLIAPVLELFSQ 1vfsA 247 :RPAMTLRASLALVKTV T0547 343 :EYAENKLILKKQN 1vfsA 277 :ESETHLALVPAGY T0547 367 :KSIKPSNALE 1vfsA 290 :ADGIPRNASG T0547 377 :YLHDSIDHLESIL 1vfsA 305 :VAGKIRRAAGRIA T0547 392 :FDLGYVD 1vfsA 318 :MDQFVVD T0547 399 :LQDRSNAEILTHLITKKAILLL 1vfsA 327 :EDLAEAGDEAVILGDAERGEPT T0547 428 :DLLAIQDEVQERYLV 1vfsA 349 :AEDWAQAAHTIAYEI T0547 453 :FWGLEQNFPIM 1vfsA 364 :VTRIGGRVPRV T0547 492 :SKDKPLFLHD 1vfsA 375 :YLGGLEHHHH Number of specific fragments extracted= 28 number of extra gaps= 0 total=8677 Will force an alignment to be made, even if fragment is small Number of alignments=376 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 50 :RFPHLIQKQIENIYGNF 1vfsA 12 :IDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVNQY 1vfsA 29 :PRSALMAVVKSNAY T0547 91 :PGFVKNLVKLGK 1vfsA 47 :VPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1vfsA 59 :AWLGTATPEEALELRAAGIQGR T0547 129 :ITVNG 1vfsA 81 :IMCWL T0547 135 :K 1vfsA 86 :W T0547 137 :RELINIGF 1vfsA 87 :TPGGPWRE T0547 146 :AAEMGHN 1vfsA 95 :AIETDID T0547 155 :LTIEGLNELEAIIDIAKE 1vfsA 102 :VSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLH 1vfsA 131 :DTG T0547 188 :S 1vfsA 135 :G T0547 190 :GVGIWA 1vfsA 136 :RNGCQP T0547 206 :LTSTELIEAVNLLKENKLL 1vfsA 142 :ADWAELVGAAVAAQAEGTV T0547 226 :QFTMIHFHLGS 1vfsA 161 :QVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGN 1vfsA 176 :GHPSIRLQLDAFRDMLA T0547 257 :ELR 1vfsA 193 :YAE Number of specific fragments extracted= 17 number of extra gaps= 0 total=8694 Will force an alignment to be made, even if fragment is small Number of alignments=377 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVNQY 1vfsA 29 :PRSALMAVVKSNAY T0547 91 :PGFVKNLVKLGK 1vfsA 47 :VPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1vfsA 59 :AWLGTATPEEALELRAAGIQG T0547 128 :PITVNGFKDRE 1vfsA 80 :RIMCWLWTPGG T0547 141 :NIGF 1vfsA 91 :PWRE T0547 146 :AAEMGH 1vfsA 95 :AIETDI T0547 153 :I 1vfsA 101 :D T0547 155 :LTIEGLNELEAIIDIAKE 1vfsA 102 :VSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLH 1vfsA 131 :DTG T0547 188 :S 1vfsA 135 :G T0547 203 :KFGLTST 1vfsA 136 :RNGCQPA T0547 210 :ELIEAVNLLKENKLL 1vfsA 146 :ELVGAAVAAQAEGTV T0547 226 :QFTMIHFHLGSQI 1vfsA 161 :QVTGVWSHFACAD T0547 239 :TEIHPLKKALNEAGNIYTELRKMGA 1vfsA 175 :PGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEY 1vfsA 200 :DPEVRHIANSPATLT T0547 282 :FKNEKSRNYT 1vfsA 215 :LPETHFDLVR T0547 306 :IAEQKKDLEP 1vfsA 226 :GLAVYGVSPS T0547 316 :DIFIESGR 1vfsA 239 :GTPAQLGL T0547 327 :ANHAVLIAPVLELFSQ 1vfsA 247 :RPAMTLRASLALVKTV T0547 343 :EYAENKLILKKQNPKLIDE 1vfsA 277 :ESETHLALVPAGYADGIPR T0547 362 :LYD 1vfsA 297 :ASG T0547 366 :YK 1vfsA 300 :RG T0547 369 :IKPSN 1vfsA 302 :PVLVA T0547 379 :HDSIDHLESILT 1vfsA 307 :GKIRRAAGRIAM T0547 393 :DLGYVD 1vfsA 319 :DQFVVD T0547 399 :LQDRSNAEILTHLITKKAILLLG 1vfsA 327 :EDLAEAGDEAVILGDAERGEPTA T0547 434 :DEVQERY 1vfsA 350 :EDWAQAA T0547 449 :SMPDFWGLEQNFPIMPL 1vfsA 357 :HTIAYEIVTRIGGRVPR Number of specific fragments extracted= 31 number of extra gaps= 0 total=8725 Will force an alignment to be made, even if fragment is small Number of alignments=378 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVN 1vfsA 29 :PRSALMAVVKSN T0547 89 :QYPGFVKNLVKLGK 1vfsA 45 :GAVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1vfsA 59 :AWLGTATPEEALELRAAGIQG T0547 128 :PITVNGFKDR 1vfsA 80 :RIMCWLWTPG T0547 140 :INIGF 1vfsA 90 :GPWRE T0547 146 :AAEMG 1vfsA 95 :AIETD T0547 153 :ITLTIEGLNELEAIIDIAKE 1vfsA 100 :IDVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLH 1vfsA 131 :DTG T0547 188 :S 1vfsA 135 :G T0547 203 :KFGLTSTELIEAVNLLK 1vfsA 136 :RNGCQPADWAELVGAAV T0547 220 :ENKLLE 1vfsA 156 :AEGTVQ T0547 227 :FTMIHFHLGS 1vfsA 162 :VTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEY 1vfsA 200 :DPEVRHIANSPATLT T0547 291 :TLREYANDV 1vfsA 215 :LPETHFDLV T0547 300 :VFILKNIA 1vfsA 226 :GLAVYGVS T0547 311 :KDLEPDIFIESGR 1vfsA 234 :PSPELGTPAQLGL T0547 327 :ANHAVLIAPVLELFSQ 1vfsA 247 :RPAMTLRASLALVKTV T0547 343 :EYAENKLILK 1vfsA 277 :ESETHLALVP T0547 353 :KQNPKLIDELYD 1vfsA 288 :GYADGIPRNASG T0547 376 :E 1vfsA 300 :R T0547 377 :YLHDSIDHLESILT 1vfsA 305 :VAGKIRRAAGRIAM T0547 393 :DLGYVD 1vfsA 319 :DQFVVD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 1vfsA 327 :EDLAEAGDEAVILGDAERGEPTAEDWA Number of specific fragments extracted= 27 number of extra gaps= 0 total=8752 Will force an alignment to be made, even if fragment is small Number of alignments=379 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 45 :GPL 1vfsA 4 :TPT T0547 48 :LLRFPHLIQKQIENIYGNF 1vfsA 10 :AEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVN 1vfsA 29 :PRSALMAVVKSN T0547 89 :QYPGFVKNLVKLGK 1vfsA 45 :GAVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1vfsA 59 :AWLGTATPEEALELRAAGIQGR T0547 129 :ITVNGFKDRE 1vfsA 81 :IMCWLWTPGG T0547 141 :NIGF 1vfsA 91 :PWRE T0547 146 :AAEMGH 1vfsA 95 :AIETDI T0547 153 :I 1vfsA 101 :D T0547 155 :LTIEGLNELEAIIDIAKE 1vfsA 102 :VSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLH 1vfsA 131 :DTG T0547 202 :SKFGLTSTELIEAVN 1vfsA 135 :GRNGCQPADWAELVG T0547 217 :LLKENKLLE 1vfsA 153 :AAQAEGTVQ T0547 227 :FTMIHFHLGS 1vfsA 162 :VTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEY 1vfsA 200 :DPEVRHIANSPATLT T0547 302 :ILKNIA 1vfsA 215 :LPETHF T0547 308 :EQKKDLEP 1vfsA 228 :AVYGVSPS T0547 316 :DIFIESGRF 1vfsA 239 :GTPAQLGLR T0547 328 :NHAVLIAPVLELFSQEY 1vfsA 248 :PAMTLRASLALVKTVPA T0547 348 :KLILKKQNPKLIDE 1vfsA 265 :GHGVSYGHHYVTES T0547 362 :LYDLYKSIK 1vfsA 280 :THLALVPAG T0547 374 :ALE 1vfsA 289 :YAD T0547 381 :SIDHLESILT 1vfsA 309 :IRRAAGRIAM T0547 393 :DLGYVD 1vfsA 319 :DQFVVD T0547 399 :LQDRSNAEILTHLITKKAILL 1vfsA 327 :EDLAEAGDEAVILGDAERGEP T0547 555 :SILDTLEDLDYDIHAIMD 1vfsA 348 :TAEDWAQAAHTIAYEIVT Number of specific fragments extracted= 28 number of extra gaps= 0 total=8780 Will force an alignment to be made, even if fragment is small Number of alignments=380 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVN 1vfsA 29 :PRSALMAVVKSN T0547 89 :QYPGFVKNLVKLGK 1vfsA 45 :GAVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGFKDR 1vfsA 79 :GRIMCWLWTPG T0547 140 :INIGF 1vfsA 90 :GPWRE T0547 146 :AAEMGH 1vfsA 95 :AIETDI T0547 153 :I 1vfsA 101 :D T0547 155 :LTIEGLNELEAIIDIAKE 1vfsA 102 :VSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLH 1vfsA 131 :DTG T0547 188 :S 1vfsA 135 :G T0547 203 :KFGLTSTELIEAVNLLK 1vfsA 136 :RNGCQPADWAELVGAAV T0547 220 :ENKLL 1vfsA 156 :AEGTV T0547 226 :QFTMIHFHLGS 1vfsA 161 :QVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEY 1vfsA 200 :DPEVRHIANSPATLT T0547 282 :FKNEKSR 1vfsA 215 :LPETHFD T0547 318 :FIESGRFVAA 1vfsA 222 :LVRTGLAVYG T0547 328 :NHAVLIAPVLELFSQ 1vfsA 248 :PAMTLRASLALVKTV T0547 343 :EYAENKLILK 1vfsA 277 :ESETHLALVP T0547 353 :KQ 1vfsA 291 :DG T0547 358 :LIDELYD 1vfsA 293 :IPRNASG T0547 376 :E 1vfsA 300 :R T0547 377 :YLHDSIDHLESILT 1vfsA 305 :VAGKIRRAAGRIAM T0547 393 :DLGYVD 1vfsA 319 :DQFVVD T0547 399 :LQDRSNAEILTHLITKKA 1vfsA 327 :EDLAEAGDEAVILGDAER T0547 426 :PAD 1vfsA 345 :GEP T0547 429 :LLAIQDEV 1vfsA 349 :AEDWAQAA T0547 553 :AQSILDTL 1vfsA 357 :HTIAYEIV Number of specific fragments extracted= 31 number of extra gaps= 0 total=8811 Will force an alignment to be made, even if fragment is small Number of alignments=381 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVN 1vfsA 29 :PRSALMAVVKSN T0547 89 :QYPGFVKNLVKLGK 1vfsA 45 :GAVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1vfsA 59 :AWLGTATPEEALELRAAGIQG T0547 128 :PITVNGFKDRE 1vfsA 80 :RIMCWLWTPGG T0547 141 :NIGF 1vfsA 91 :PWRE T0547 146 :AAEMGH 1vfsA 95 :AIETDI T0547 153 :I 1vfsA 101 :D T0547 155 :LTIEGLNELEAIIDIAKE 1vfsA 102 :VSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLH 1vfsA 131 :DTG T0547 202 :SKFGLTSTELIEAVN 1vfsA 135 :GRNGCQPADWAELVG T0547 217 :LLKENKLL 1vfsA 153 :AAQAEGTV T0547 226 :QFTMIHFHLGS 1vfsA 161 :QVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEY 1vfsA 200 :DPEVRHIANSPATLT T0547 280 :SQFKNEKSR 1vfsA 227 :LAVYGVSPS T0547 313 :LEPDIFIESGR 1vfsA 236 :PELGTPAQLGL T0547 327 :ANHAVLIAPVLELFSQ 1vfsA 247 :RPAMTLRASLALVKTV T0547 343 :EYAENKLILKKQN 1vfsA 277 :ESETHLALVPAGY T0547 367 :KSIKPSNALE 1vfsA 290 :ADGIPRNASG T0547 377 :YLHDSIDHLESIL 1vfsA 305 :VAGKIRRAAGRIA T0547 392 :FDLGYVD 1vfsA 318 :MDQFVVD T0547 399 :LQDRSNAEILTHLITKKAILLL 1vfsA 327 :EDLAEAGDEAVILGDAERGEPT T0547 428 :DLLAIQDEV 1vfsA 349 :AEDWAQAAH Number of specific fragments extracted= 26 number of extra gaps= 0 total=8837 Will force an alignment to be made, even if fragment is small Number of alignments=382 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 Warning: unaligning (T0547)D503 because last residue in template chain is (1vfsA)H385 T0547 45 :GPLLL 1vfsA 4 :TPTRV T0547 50 :RFPHLIQKQIENIYGNF 1vfsA 12 :IDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVNQYPG 1vfsA 29 :PRSALMAVVKSNAYGH T0547 93 :FVKNLVKLGK 1vfsA 49 :CARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGFKDRELINIGF 1vfsA 79 :GRIMCWLWTPGGPWREAI T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1vfsA 97 :ETDIDVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 187 :HSAGV 1vfsA 131 :DTGLG T0547 203 :KFGLTSTELIEAVN 1vfsA 136 :RNGCQPADWAELVG T0547 217 :LLKENKLLEQFT 1vfsA 153 :AAQAEGTVQVTG T0547 230 :IHFHLGS 1vfsA 165 :VWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLG 1vfsA 200 :DPEVRHIA T0547 281 :QFKNEK 1vfsA 208 :NSPATL T0547 291 :TLREY 1vfsA 214 :TLPET T0547 296 :ANDVVFILKNIAEQ 1vfsA 220 :FDLVRTGLAVYGVS T0547 313 :LEPDIFI 1vfsA 234 :PSPELGT T0547 321 :SGRFVAANHAVLIAPVLELFSQE 1vfsA 241 :PAQLGLRPAMTLRASLALVKTVP T0547 344 :YAE 1vfsA 279 :ETH T0547 348 :KLILKK 1vfsA 282 :LALVPA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1vfsA 289 :YADGIPRNASGRGPVLVAGKIRR T0547 377 :YLHDSIDHLESILT 1vfsA 321 :FVVDLGEDLAEAGD T0547 391 :LFDLGY 1vfsA 337 :VILGDA T0547 398 :DLQDRSNAEILTHLITKKAILLLGDK 1vfsA 343 :ERGEPTAEDWAQAAHTIAYEIVTRIG T0547 487 :GEISYSKDKPLFLHDV 1vfsA 369 :GRVPRVYLGGLEHHHH Number of specific fragments extracted= 26 number of extra gaps= 0 total=8863 Will force an alignment to be made, even if fragment is small Number of alignments=383 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 Warning: unaligning (T0547)L456 because last residue in template chain is (1vfsA)H385 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVNQY 1vfsA 29 :PRSALMAVVKSNAY T0547 91 :PGFVKNLVKLGK 1vfsA 47 :VPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGF 1vfsA 79 :GRIMCWLW T0547 135 :K 1vfsA 88 :P T0547 139 :LINIGF 1vfsA 91 :PWREAI T0547 148 :EMGH 1vfsA 97 :ETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLH 1vfsA 131 :DTG T0547 190 :GV 1vfsA 134 :LG T0547 203 :KFGLTS 1vfsA 136 :RNGCQP T0547 209 :TELIEAVNLLKENKLLEQFT 1vfsA 145 :AELVGAAVAAQAEGTVQVTG T0547 230 :IHFHLG 1vfsA 165 :VWSHFA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 172 :ADEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEYSQ 1vfsA 200 :DPEVRHIANSPATLTLP T0547 282 :FKNEKSRNY 1vfsA 218 :THFDLVRTG T0547 307 :AEQKKD 1vfsA 227 :LAVYGV T0547 313 :LEP 1vfsA 234 :PSP T0547 316 :DIFIESGRF 1vfsA 239 :GTPAQLGLR T0547 328 :NHAVLIAPVLELFSQE 1vfsA 248 :PAMTLRASLALVKTVP T0547 344 :YAE 1vfsA 279 :ETH T0547 348 :KLILKK 1vfsA 282 :LALVPA T0547 363 :YDLYKSIKPSNALE 1vfsA 289 :YADGIPRNASGRGP T0547 377 :YLHDSIDHLE 1vfsA 308 :KIRRAAGRIA T0547 389 :LTLFDLGYV 1vfsA 318 :MDQFVVDLG T0547 399 :LQDRSNAEILTHLITKKAILLLG 1vfsA 327 :EDLAEAGDEAVILGDAERGEPTA T0547 423 :KQNPADLLAIQDEVQERYLVNF 1vfsA 354 :QAAHTIAYEIVTRIGGRVPRVY T0547 447 :FQSMPDFWG 1vfsA 376 :LGGLEHHHH Number of specific fragments extracted= 31 number of extra gaps= 0 total=8894 Will force an alignment to be made, even if fragment is small Number of alignments=384 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 Warning: unaligning (T0547)I573 because last residue in template chain is (1vfsA)H385 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVNQY 1vfsA 29 :PRSALMAVVKSNAY T0547 91 :PGFVKNLVKLGK 1vfsA 47 :VPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGFKDRELINIGF 1vfsA 79 :GRIMCWLWTPGGPWREAI T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1vfsA 97 :ETDIDVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHSA 1vfsA 131 :DTGLG T0547 203 :KFGLTSTELIEAVNLLKEN 1vfsA 136 :RNGCQPADWAELVGAAVAA T0547 222 :KLLEQFT 1vfsA 158 :GTVQVTG T0547 230 :IHFHLG 1vfsA 165 :VWSHFA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 172 :ADEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEYSQFK 1vfsA 200 :DPEVRHIANSPATLTLPET T0547 291 :TLREYA 1vfsA 219 :HFDLVR T0547 299 :VVFILKNIAE 1vfsA 225 :TGLAVYGVSP T0547 312 :DLEPDIFIESGRF 1vfsA 235 :SPELGTPAQLGLR T0547 328 :NHAVLIAPVLELFSQE 1vfsA 248 :PAMTLRASLALVKTVP T0547 348 :KLILKK 1vfsA 273 :HYVTES T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1vfsA 280 :THLALVPAGYADGIPRNASGRGP T0547 377 :YLHDSIDHLE 1vfsA 308 :KIRRAAGRIA T0547 389 :LTLFDLGY 1vfsA 318 :MDQFVVDL T0547 398 :DLQDRSNAEILTHLITKKAILLLG 1vfsA 326 :GEDLAEAGDEAVILGDAERGEPTA T0547 423 :KQNPADLLAIQDEVQERYLVNFSLF 1vfsA 354 :QAAHTIAYEIVTRIGGRVPRVYLGG T0547 450 :M 1vfsA 379 :L T0547 568 :HAIMD 1vfsA 380 :EHHHH Number of specific fragments extracted= 26 number of extra gaps= 0 total=8920 Will force an alignment to be made, even if fragment is small Number of alignments=385 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVNQ 1vfsA 29 :PRSALMAVVKSNA T0547 90 :YPGFVKNLVKLGK 1vfsA 46 :AVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGFKDRELINIGF 1vfsA 79 :GRIMCWLWTPGGPWREAI T0547 148 :EMGH 1vfsA 97 :ETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHS 1vfsA 131 :DTGL T0547 202 :SKFGLTSTE 1vfsA 135 :GRNGCQPAD T0547 211 :LIEAVNLLKENKLLEQFT 1vfsA 147 :LVGAAVAAQAEGTVQVTG T0547 230 :IHFHLGS 1vfsA 165 :VWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRN 1vfsA 200 :DPEVRHIANSPATLTLPETHFDLVR T0547 291 :TLR 1vfsA 225 :TGL T0547 308 :EQKKD 1vfsA 228 :AVYGV T0547 313 :LEPDIFIESGRF 1vfsA 236 :PELGTPAQLGLR T0547 328 :NHAVLIAPVLELFSQE 1vfsA 248 :PAMTLRASLALVKTVP T0547 345 :AENKLILKK 1vfsA 270 :YGHHYVTES T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1vfsA 280 :THLALVPAGYADGIPRNASGRGP T0547 377 :YLHDSIDHLE 1vfsA 308 :KIRRAAGRIA T0547 389 :LTLFDLGY 1vfsA 318 :MDQFVVDL T0547 398 :DLQDRSNAEILTHLITKKAILL 1vfsA 326 :GEDLAEAGDEAVILGDAERGEP T0547 429 :LLAIQDEVQ 1vfsA 348 :TAEDWAQAA T0547 553 :AQSILDTLEDL 1vfsA 357 :HTIAYEIVTRI T0547 607 :KS 1vfsA 377 :GG Number of specific fragments extracted= 27 number of extra gaps= 0 total=8947 Will force an alignment to be made, even if fragment is small Number of alignments=386 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K28 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 Warning: unaligning (T0547)L456 because last residue in template chain is (1vfsA)H385 T0547 29 :P 1vfsA 4 :T T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 1vfsA 5 :PTRVYAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLK 1vfsA 29 :PRSALMAVVK T0547 87 :VNQYPGFVKNLVKLGK 1vfsA 43 :GHGAVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGFKDRELINIGF 1vfsA 79 :GRIMCWLWTPGGPWREAI T0547 148 :EMGH 1vfsA 97 :ETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHSA 1vfsA 131 :DTGLG T0547 203 :KFGLTSTELIEAVNLLKEN 1vfsA 136 :RNGCQPADWAELVGAAVAA T0547 222 :KLLEQFT 1vfsA 158 :GTVQVTG T0547 230 :IHFHLG 1vfsA 165 :VWSHFA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 172 :ADEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAV 1vfsA 200 :DPEVRHIANSPAT T0547 305 :NIAEQKKD 1vfsA 213 :LTLPETHF T0547 316 :DIF 1vfsA 221 :DLV T0547 320 :ESGRFVAA 1vfsA 224 :RTGLAVYG T0547 328 :NHAVLIAPVLELFSQE 1vfsA 248 :PAMTLRASLALVKTVP T0547 344 :YAE 1vfsA 279 :ETH T0547 348 :KLILKK 1vfsA 282 :LALVPA T0547 354 :QNPKLIDELY 1vfsA 289 :YADGIPRNAS T0547 373 :NALE 1vfsA 299 :GRGP T0547 377 :YLHDSIDHLE 1vfsA 308 :KIRRAAGRIA T0547 394 :LGYV 1vfsA 318 :MDQF T0547 398 :DLQDRSNAEILTHLITKKA 1vfsA 326 :GEDLAEAGDEAVILGDAER T0547 417 :ILLLGDKQNPADLLAIQDEVQERYL 1vfsA 348 :TAEDWAQAAHTIAYEIVTRIGGRVP T0547 444 :FSLFQSMPDFWG 1vfsA 373 :RVYLGGLEHHHH Number of specific fragments extracted= 28 number of extra gaps= 0 total=8975 Will force an alignment to be made, even if fragment is small Number of alignments=387 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 Warning: unaligning (T0547)V502 because last residue in template chain is (1vfsA)H385 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVNQY 1vfsA 29 :PRSALMAVVKSNAY T0547 91 :PGFVKNLVKLGK 1vfsA 47 :VPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGFKDRELINIGF 1vfsA 79 :GRIMCWLWTPGGPWREAI T0547 148 :EMGH 1vfsA 97 :ETDI T0547 153 :IT 1vfsA 101 :DV T0547 156 :TIEGLNELEAIIDIAKE 1vfsA 103 :SVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 187 :HSAGV 1vfsA 131 :DTGLG T0547 203 :KFGLTS 1vfsA 136 :RNGCQP T0547 209 :TELIEAVNLLKENKLLEQFT 1vfsA 145 :AELVGAAVAAQAEGTVQVTG T0547 230 :IHFHLGS 1vfsA 165 :VWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAV 1vfsA 200 :DPEVRHIANSPAT T0547 278 :EYSQFKNEK 1vfsA 227 :LAVYGVSPS T0547 313 :LEPDIFIESGR 1vfsA 236 :PELGTPAQLGL T0547 327 :ANHAVLIAPVLELFSQE 1vfsA 247 :RPAMTLRASLALVKTVP T0547 344 :YAE 1vfsA 279 :ETH T0547 348 :KLILKK 1vfsA 282 :LALVPA T0547 354 :QNPKLIDEL 1vfsA 289 :YADGIPRNA T0547 372 :SNALE 1vfsA 298 :SGRGP T0547 377 :YLHDSIDHLE 1vfsA 308 :KIRRAAGRIA T0547 389 :LTLFDLGYV 1vfsA 318 :MDQFVVDLG T0547 399 :LQDRSNAEILTHLITKKA 1vfsA 327 :EDLAEAGDEAVILGDAER T0547 426 :PADLLAIQDEVQERYL 1vfsA 345 :GEPTAEDWAQAAHTIA T0547 450 :MPDFWGLEQNFPIM 1vfsA 361 :YEIVTRIGGRVPRV T0547 492 :SKDKPLFLHD 1vfsA 375 :YLGGLEHHHH Number of specific fragments extracted= 29 number of extra gaps= 0 total=9004 Will force an alignment to be made, even if fragment is small Number of alignments=388 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 46 :PLLL 1vfsA 5 :PTRV T0547 50 :RFPHLIQKQIENIYGNF 1vfsA 12 :IDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVNQYPG 1vfsA 29 :PRSALMAVVKSNAYGH T0547 93 :FVKNLVKLGK 1vfsA 49 :CARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGFKDRELINIGF 1vfsA 79 :GRIMCWLWTPGGPWREAI T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1vfsA 97 :ETDIDVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 187 :HSAGV 1vfsA 131 :DTGLG T0547 203 :KFGLTSTELIEAVN 1vfsA 136 :RNGCQPADWAELVG T0547 217 :LLKENKLLEQFT 1vfsA 153 :AAQAEGTVQVTG T0547 230 :IHFHLGS 1vfsA 165 :VWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLG 1vfsA 200 :DPEVRHIA T0547 281 :QFKNEK 1vfsA 208 :NSPATL T0547 291 :TLREY 1vfsA 214 :TLPET T0547 296 :ANDVVFILKNIAEQ 1vfsA 220 :FDLVRTGLAVYGVS T0547 313 :LEPDIFI 1vfsA 234 :PSPELGT T0547 321 :SGRFVAANHAVLIAPVLELFSQE 1vfsA 241 :PAQLGLRPAMTLRASLALVKTVP T0547 344 :YAE 1vfsA 279 :ETH T0547 348 :KLILKK 1vfsA 282 :LALVPA T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1vfsA 289 :YADGIPRNASGRGPVLVAGKIRR T0547 377 :YLHDSIDHLESILT 1vfsA 321 :FVVDLGEDLAEAGD T0547 391 :LFDLGY 1vfsA 337 :VILGDA T0547 398 :DLQDRSNAEILTHLITKKAILLL 1vfsA 343 :ERGEPTAEDWAQAAHTIAYEIVT Number of specific fragments extracted= 25 number of extra gaps= 0 total=9029 Will force an alignment to be made, even if fragment is small Number of alignments=389 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVNQY 1vfsA 29 :PRSALMAVVKSNAY T0547 91 :PGFVKNLVKLGK 1vfsA 47 :VPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGF 1vfsA 79 :GRIMCWLW T0547 135 :K 1vfsA 88 :P T0547 139 :LINIGF 1vfsA 91 :PWREAI T0547 148 :EMGH 1vfsA 97 :ETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLH 1vfsA 131 :DTG T0547 190 :GV 1vfsA 134 :LG T0547 203 :KFGLTS 1vfsA 136 :RNGCQP T0547 209 :TELIEAVNLLKENKLLEQFT 1vfsA 145 :AELVGAAVAAQAEGTVQVTG T0547 230 :IHFHLG 1vfsA 165 :VWSHFA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 172 :ADEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEYSQ 1vfsA 200 :DPEVRHIANSPATLTLP T0547 282 :FKNEKSRNY 1vfsA 218 :THFDLVRTG T0547 307 :AEQKKD 1vfsA 227 :LAVYGV T0547 313 :LEP 1vfsA 234 :PSP T0547 316 :DIFIESGRF 1vfsA 239 :GTPAQLGLR T0547 328 :NHAVLIAPVLELFSQE 1vfsA 248 :PAMTLRASLALVKTVP T0547 344 :YAE 1vfsA 279 :ETH T0547 348 :KLILKK 1vfsA 282 :LALVPA T0547 363 :YDLYKSIKPSNALE 1vfsA 289 :YADGIPRNASGRGP T0547 377 :YLHDSIDHLE 1vfsA 308 :KIRRAAGRIA T0547 389 :LTLFDLGYV 1vfsA 318 :MDQFVVDLG T0547 399 :LQDRSNAEILTHLITKKAI 1vfsA 327 :EDLAEAGDEAVILGDAERG T0547 427 :ADLLAIQDEVQE 1vfsA 346 :EPTAEDWAQAAH T0547 554 :QSILDTLEDL 1vfsA 358 :TIAYEIVTRI Number of specific fragments extracted= 31 number of extra gaps= 0 total=9060 Will force an alignment to be made, even if fragment is small Number of alignments=390 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVNQY 1vfsA 29 :PRSALMAVVKSNAY T0547 91 :PGFVKNLVKLGK 1vfsA 47 :VPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGFKDRELINIGF 1vfsA 79 :GRIMCWLWTPGGPWREAI T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1vfsA 97 :ETDIDVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHSA 1vfsA 131 :DTGLG T0547 203 :KFGLTSTELIEAVNLLKEN 1vfsA 136 :RNGCQPADWAELVGAAVAA T0547 222 :KLLEQFT 1vfsA 158 :GTVQVTG T0547 230 :IHFHLG 1vfsA 165 :VWSHFA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 172 :ADEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEYSQFK 1vfsA 200 :DPEVRHIANSPATLTLPET T0547 291 :TLREYA 1vfsA 219 :HFDLVR T0547 299 :VVFILKNIAE 1vfsA 225 :TGLAVYGVSP T0547 312 :DLEPDIFIESGRF 1vfsA 235 :SPELGTPAQLGLR T0547 328 :NHAVLIAPVLELFSQE 1vfsA 248 :PAMTLRASLALVKTVP T0547 348 :KLILKK 1vfsA 273 :HYVTES T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1vfsA 280 :THLALVPAGYADGIPRNASGRGP T0547 377 :YLHDSIDHLE 1vfsA 308 :KIRRAAGRIA T0547 389 :LTLFDLGY 1vfsA 318 :MDQFVVDL T0547 398 :DLQDRSNAEILTHLITKKAILLLG 1vfsA 326 :GEDLAEAGDEAVILGDAERGEPTA T0547 423 :KQNPADLLAIQDEVQERYLVNF 1vfsA 354 :QAAHTIAYEIVTRIGGRVPRVY Number of specific fragments extracted= 23 number of extra gaps= 0 total=9083 Will force an alignment to be made, even if fragment is small Number of alignments=391 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVNQ 1vfsA 29 :PRSALMAVVKSNA T0547 90 :YPGFVKNLVKLGK 1vfsA 46 :AVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGFKDRELINIGF 1vfsA 79 :GRIMCWLWTPGGPWREAI T0547 148 :EMGH 1vfsA 97 :ETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHS 1vfsA 131 :DTGL T0547 202 :SKFGLTSTE 1vfsA 135 :GRNGCQPAD T0547 211 :LIEAVNLLKENKLLEQFT 1vfsA 147 :LVGAAVAAQAEGTVQVTG T0547 230 :IHFHLGS 1vfsA 165 :VWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRN 1vfsA 200 :DPEVRHIANSPATLTLPETHFDLVR T0547 291 :TLR 1vfsA 225 :TGL T0547 308 :EQKKD 1vfsA 228 :AVYGV T0547 313 :LEPDIFIESGRF 1vfsA 236 :PELGTPAQLGLR T0547 328 :NHAVLIAPVLELFSQE 1vfsA 248 :PAMTLRASLALVKTVP T0547 345 :AENKLILKK 1vfsA 270 :YGHHYVTES T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1vfsA 280 :THLALVPAGYADGIPRNASGRGP T0547 377 :YLHDSIDHLE 1vfsA 308 :KIRRAAGRIA T0547 389 :LTLFDLGY 1vfsA 318 :MDQFVVDL T0547 398 :DLQDRSNAEILTHLITKKAIL 1vfsA 326 :GEDLAEAGDEAVILGDAERGE T0547 428 :DLLAIQDEVQ 1vfsA 347 :PTAEDWAQAA T0547 553 :AQSILDTLEDL 1vfsA 357 :HTIAYEIVTRI Number of specific fragments extracted= 26 number of extra gaps= 0 total=9109 Will force an alignment to be made, even if fragment is small Number of alignments=392 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 45 :GPLLLRFPHLIQKQIENIYGNF 1vfsA 7 :RVYAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLK 1vfsA 29 :PRSALMAVVK T0547 87 :VNQYPGFVKNLVKLGK 1vfsA 43 :GHGAVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGFKDRELINIGF 1vfsA 79 :GRIMCWLWTPGGPWREAI T0547 148 :EMGH 1vfsA 97 :ETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHSA 1vfsA 131 :DTGLG T0547 203 :KFGLTSTELIEAVNLLKEN 1vfsA 136 :RNGCQPADWAELVGAAVAA T0547 222 :KLLEQFT 1vfsA 158 :GTVQVTG T0547 230 :IHFHLG 1vfsA 165 :VWSHFA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 172 :ADEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAV 1vfsA 200 :DPEVRHIANSPAT T0547 305 :NIAEQKKD 1vfsA 213 :LTLPETHF T0547 316 :DIF 1vfsA 221 :DLV T0547 320 :ESGRFVAA 1vfsA 224 :RTGLAVYG T0547 328 :NHAVLIAPVLELFSQE 1vfsA 248 :PAMTLRASLALVKTVP T0547 344 :YAE 1vfsA 279 :ETH T0547 348 :KLILKK 1vfsA 282 :LALVPA T0547 354 :QNPKLIDELY 1vfsA 289 :YADGIPRNAS T0547 373 :NALE 1vfsA 299 :GRGP T0547 377 :YLHDSIDHLE 1vfsA 308 :KIRRAAGRIA T0547 394 :LGYV 1vfsA 318 :MDQF T0547 398 :DLQDRSNAEILTHLITKKA 1vfsA 326 :GEDLAEAGDEAVILGDAER T0547 417 :ILLLGDKQNPADLLAIQDEVQER 1vfsA 348 :TAEDWAQAAHTIAYEIVTRIGGR Number of specific fragments extracted= 26 number of extra gaps= 0 total=9135 Will force an alignment to be made, even if fragment is small Number of alignments=393 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 45 :GP 1vfsA 4 :TP T0547 47 :LLLRFPHLIQKQIENIYGNF 1vfsA 9 :YAEIDLDAVRANVRALRARA T0547 77 :GGFNAVYPLKVNQY 1vfsA 29 :PRSALMAVVKSNAY T0547 91 :PGFVKNLVKLGK 1vfsA 47 :VPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1vfsA 59 :AWLGTATPEEALELRAAGIQ T0547 127 :APITVNGFKDRELINIGF 1vfsA 79 :GRIMCWLWTPGGPWREAI T0547 148 :EMGH 1vfsA 97 :ETDI T0547 153 :IT 1vfsA 101 :DV T0547 156 :TIEGLNELEAIIDIAKE 1vfsA 103 :SVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 187 :HSAGV 1vfsA 131 :DTGLG T0547 203 :KFGLTS 1vfsA 136 :RNGCQP T0547 209 :TELIEAVNLLKENKLLEQFT 1vfsA 145 :AELVGAAVAAQAEGTVQVTG T0547 230 :IHFHLGS 1vfsA 165 :VWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKEGV T0547 265 :NLKAINLGGGLAV 1vfsA 200 :DPEVRHIANSPAT T0547 278 :EYSQFKNEK 1vfsA 227 :LAVYGVSPS T0547 313 :LEPDIFIESGR 1vfsA 236 :PELGTPAQLGL T0547 327 :ANHAVLIAPVLELFSQE 1vfsA 247 :RPAMTLRASLALVKTVP T0547 344 :YAE 1vfsA 279 :ETH T0547 348 :KLILKK 1vfsA 282 :LALVPA T0547 354 :QNPKLIDEL 1vfsA 289 :YADGIPRNA T0547 372 :SNALE 1vfsA 298 :SGRGP T0547 377 :YLHDSIDHLE 1vfsA 308 :KIRRAAGRIA T0547 389 :LTLFDLGYV 1vfsA 318 :MDQFVVDLG T0547 399 :LQDRSNAEILTHLITKKA 1vfsA 327 :EDLAEAGDEAVILGDAER T0547 426 :PADLLAIQDEVQER 1vfsA 345 :GEPTAEDWAQAAHT T0547 555 :SILDTLED 1vfsA 359 :IAYEIVTR Number of specific fragments extracted= 28 number of extra gaps= 0 total=9163 Will force an alignment to be made, even if fragment is small Number of alignments=394 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 Warning: unaligning (T0547)A569 because last residue in template chain is (1vfsA)H385 T0547 45 :GPLLLR 1vfsA 4 :TPTRVY T0547 51 :FPHLIQKQIENIYGNFNK 1vfsA 13 :DLDAVRANVRALRARAPR T0547 79 :FNAVYPLKVNQY 1vfsA 31 :SALMAVVKSNAY T0547 91 :PGFVKNLVKLGK 1vfsA 47 :VPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1vfsA 59 :AWLGTATPEEALELRAAGIQGR T0547 129 :ITVNGF 1vfsA 84 :WLWTPG T0547 139 :LINIGFIAAEM 1vfsA 90 :GPWREAIETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHSAGVGI 1vfsA 131 :DTGLGRNGC T0547 199 :GI 1vfsA 140 :QP T0547 206 :LTSTELIEAVNLLKENK 1vfsA 142 :ADWAELVGAAVAAQAEG T0547 224 :LEQFTMIHFHLGSQ 1vfsA 159 :TVQVTGVWSHFACA T0547 238 :ITEIHPLKKALNEAGNIYTELRKM 1vfsA 174 :EPGHPSIRLQLDAFRDMLAYAEKE T0547 263 :AKNLKA 1vfsA 198 :GVDPEV T0547 278 :EYSQ 1vfsA 204 :RHIA T0547 291 :TLREYANDVVFILKN 1vfsA 214 :TLPETHFDLVRTGLA T0547 312 :DLEPDIFIESG 1vfsA 229 :VYGVSPSPELG T0547 323 :RFVAANHAVLIAPVLELFSQ 1vfsA 243 :QLGLRPAMTLRASLALVKTV T0547 343 :EYAENKLILKKQNPKLIDELYDLYKSIKP 1vfsA 278 :SETHLALVPAGYADGIPRNASGRGPVLVA T0547 373 :NALEYLHDSIDHLESILTLFD 1vfsA 314 :GRIAMDQFVVDLGEDLAEAGD T0547 394 :LGYVDLQDR 1vfsA 337 :VILGDAERG T0547 403 :SNAEILTHLITKKAILLLGDKQ 1vfsA 347 :PTAEDWAQAAHTIAYEIVTRIG T0547 429 :LLAIQDEVQE 1vfsA 369 :GRVPRVYLGG T0547 563 :LDYDIH 1vfsA 379 :LEHHHH Number of specific fragments extracted= 25 number of extra gaps= 0 total=9188 Will force an alignment to be made, even if fragment is small Number of alignments=395 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)D41 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 Warning: unaligning (T0547)E561 because last residue in template chain is (1vfsA)H385 T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFN 1vfsA 4 :TPTRVYAEIDLDAVRANVRALRARAP T0547 78 :GFNAVYPLKVNQ 1vfsA 30 :RSALMAVVKSNA T0547 90 :YPGFVKNLVKLGK 1vfsA 46 :AVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1vfsA 59 :AWLGTATPEEALELRAAGIQGRIMCWLWTPGGP T0547 141 :NIGFIAAEM 1vfsA 92 :WREAIETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHSAGV 1vfsA 131 :DTGLGRN T0547 205 :GLTSTELIEAVNLLKENKL 1vfsA 138 :GCQPADWAELVGAAVAAQA T0547 224 :LEQFTMIHFHLGSQ 1vfsA 159 :TVQVTGVWSHFACA T0547 238 :ITEIHPLKKALNEAGNIYTELRKM 1vfsA 174 :EPGHPSIRLQLDAFRDMLAYAEKE T0547 263 :AKNLKAINL 1vfsA 198 :GVDPEVRHI T0547 307 :AEQKKD 1vfsA 241 :PAQLGL T0547 327 :ANHAVLIAPVLELFSQ 1vfsA 247 :RPAMTLRASLALVKTV T0547 343 :EYAENKLILKK 1vfsA 278 :SETHLALVPAG T0547 366 :YKSIKPS 1vfsA 289 :YADGIPR T0547 375 :LEYLHD 1vfsA 299 :GRGPVL T0547 381 :SIDHLES 1vfsA 309 :IRRAAGR T0547 390 :TLFDLGYVDLQDR 1vfsA 316 :IAMDQFVVDLGED T0547 403 :SNAEILTH 1vfsA 330 :AEAGDEAV T0547 420 :LGDKQNPADLLAIQDEVQER 1vfsA 338 :ILGDAERGEPTAEDWAQAAH T0547 449 :SMPDFWGL 1vfsA 358 :TIAYEIVT T0547 530 :FTHPTEAIISINEK 1vfsA 366 :RIGGRVPRVYLGGL T0547 556 :ILDTL 1vfsA 380 :EHHHH Number of specific fragments extracted= 24 number of extra gaps= 0 total=9212 Will force an alignment to be made, even if fragment is small Number of alignments=396 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L38 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 Warning: unaligning (T0547)I573 because last residue in template chain is (1vfsA)H385 T0547 39 :RDD 1vfsA 4 :TPT T0547 46 :PLLL 1vfsA 7 :RVYA T0547 50 :RFPHLIQKQIENIYGNFN 1vfsA 12 :IDLDAVRANVRALRARAP T0547 78 :GFNAVYPLKVNQ 1vfsA 30 :RSALMAVVKSNA T0547 90 :YPGFVKNLVKLG 1vfsA 46 :AVPCARAAQEAG T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITVNG 1vfsA 58 :AAWLGTATPEEALELRAAGIQGRIMCWLW T0547 136 :DRELINIGFIAAEM 1vfsA 87 :TPGGPWREAIETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHSA 1vfsA 131 :DTGLG T0547 203 :KFGLTSTELIEAVNLLKEN 1vfsA 136 :RNGCQPADWAELVGAAVAA T0547 222 :K 1vfsA 158 :G T0547 224 :LEQFTMIHFHLGS 1vfsA 159 :TVQVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKE T0547 263 :AKNLKAINLGGGLAV 1vfsA 198 :GVDPEVRHIANSPAT T0547 299 :V 1vfsA 213 :L T0547 309 :QKKDLEPDIFI 1vfsA 214 :TLPETHFDLVR T0547 321 :SGRFVAA 1vfsA 225 :TGLAVYG T0547 328 :NHAVLIAPVLELFSQ 1vfsA 248 :PAMTLRASLALVKTV T0547 343 :EYAENKLILKKQNPKLIDELYDLYK 1vfsA 278 :SETHLALVPAGYADGIPRNASGRGP T0547 378 :LHDSIDHLESI 1vfsA 306 :AGKIRRAAGRI T0547 391 :LFDLGYVDLQDR 1vfsA 317 :AMDQFVVDLGED T0547 403 :SNAEILTHLITKK 1vfsA 330 :AEAGDEAVILGDA T0547 541 :NEKGYEVEGIIE 1vfsA 343 :ERGEPTAEDWAQ T0547 553 :AQSILDTLEDLDYDI 1vfsA 357 :HTIAYEIVTRIGGRV T0547 568 :HAIMD 1vfsA 380 :EHHHH Number of specific fragments extracted= 26 number of extra gaps= 0 total=9238 Will force an alignment to be made, even if fragment is small Number of alignments=397 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)G42 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 43 :YKGP 1vfsA 4 :TPTR T0547 47 :LLLRFPHLIQKQIENIYGNFN 1vfsA 9 :YAEIDLDAVRANVRALRARAP T0547 78 :GFNAVYPLKVN 1vfsA 30 :RSALMAVVKSN T0547 89 :QYPGFVKNLVKLGK 1vfsA 45 :GAVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELI 1vfsA 59 :AWLGTATPEEALELRAAGIQGRIMCWLWTPGGPWR T0547 143 :GFIAAEM 1vfsA 94 :EAIETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHS 1vfsA 131 :DTGL T0547 202 :SKFGLTSTELIEAVNL 1vfsA 135 :GRNGCQPADWAELVGA T0547 218 :LKENK 1vfsA 154 :AQAEG T0547 224 :LEQFTMIHFHLGS 1vfsA 159 :TVQVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKE T0547 263 :AKNLKAINL 1vfsA 198 :GVDPEVRHI T0547 283 :KNEK 1vfsA 239 :GTPA T0547 309 :QKKDL 1vfsA 243 :QLGLR T0547 328 :NHAVLIAPVLELFSQEY 1vfsA 248 :PAMTLRASLALVKTVPA T0547 345 :AENKLILKK 1vfsA 272 :HHYVTESET T0547 366 :YKSIKPSNALEYLHDSIDHLESI 1vfsA 281 :HLALVPAGYADGIPRNASGRGPV T0547 436 :VQERYLVNFSLFQSMPDF 1vfsA 304 :LVAGKIRRAAGRIAMDQF T0547 462 :IMPLDRLDEEPTRSASIW 1vfsA 322 :VVDLGEDLAEAGDEAVIL T0547 482 :TCDSDGEI 1vfsA 340 :GDAERGEP T0547 555 :SILDTLEDLDYDIHAIMD 1vfsA 348 :TAEDWAQAAHTIAYEIVT T0547 606 :LKSIGV 1vfsA 371 :VPRVYL Number of specific fragments extracted= 24 number of extra gaps= 0 total=9262 Will force an alignment to be made, even if fragment is small Number of alignments=398 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)D41 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFN 1vfsA 4 :TPTRVYAEIDLDAVRANVRALRARAP T0547 78 :GFNAVYPLKVNQ 1vfsA 30 :RSALMAVVKSNA T0547 90 :YPGFVKNLVKLGK 1vfsA 46 :AVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 1vfsA 59 :AWLGTATPEEALELRAAGIQGRIMCWLWTPG T0547 141 :NIGFIAAEM 1vfsA 92 :WREAIETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHSA 1vfsA 131 :DTGLG T0547 203 :KFGLTSTELIEAVNLLKEN 1vfsA 136 :RNGCQPADWAELVGAAVAA T0547 222 :K 1vfsA 158 :G T0547 224 :LEQFTMIHFHLGS 1vfsA 159 :TVQVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKE T0547 263 :AKNLKAINLGG 1vfsA 198 :GVDPEVRHIAN T0547 304 :KNIAEQKKDLEPDIFI 1vfsA 209 :SPATLTLPETHFDLVR T0547 321 :SGRFVAA 1vfsA 225 :TGLAVYG T0547 328 :NHAVLIAPVLELFSQEYAENK 1vfsA 248 :PAMTLRASLALVKTVPAGHGV T0547 396 :YVDLQ 1vfsA 269 :SYGHH T0547 403 :SNAEILTHLITKK 1vfsA 276 :TESETHLALVPAG T0547 421 :GDKQNPAD 1vfsA 289 :YADGIPRN T0547 436 :VQERYLVNFS 1vfsA 297 :ASGRGPVLVA T0547 457 :EQNFPI 1vfsA 307 :GKIRRA T0547 530 :FT 1vfsA 313 :AG T0547 532 :HPTEAIISINE 1vfsA 317 :AMDQFVVDLGE T0547 543 :KGYEVEGIIEAQS 1vfsA 332 :AGDEAVILGDAER T0547 556 :ILDTLEDLDYDI 1vfsA 349 :AEDWAQAAHTIA T0547 596 :LYLFLNDNGYLKSIGV 1vfsA 361 :YEIVTRIGGRVPRVYL Number of specific fragments extracted= 26 number of extra gaps= 0 total=9288 Will force an alignment to be made, even if fragment is small Number of alignments=399 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)D41 because first residue in template chain is (1vfsA)E3 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFN 1vfsA 4 :TPTRVYAEIDLDAVRANVRALRARAP T0547 78 :GFNAVYPLKVNQ 1vfsA 30 :RSALMAVVKSNA T0547 90 :YPGFVKNLVKLGK 1vfsA 46 :AVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 1vfsA 59 :AWLGTATPEEALELRAAGIQGRIMCWLWTPG T0547 141 :NIGFIAAEM 1vfsA 92 :WREAIETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHS 1vfsA 131 :DTGL T0547 202 :SKFGLTSTELIEAVNLLKEN 1vfsA 135 :GRNGCQPADWAELVGAAVAA T0547 222 :K 1vfsA 158 :G T0547 224 :LEQFTMIHFHLGS 1vfsA 159 :TVQVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKE T0547 263 :AKNLKAINLG 1vfsA 198 :GVDPEVRHIA T0547 304 :KNIAEQKKDLEPDIFI 1vfsA 209 :SPATLTLPETHFDLVR T0547 321 :SGRFVAA 1vfsA 225 :TGLAVYG T0547 328 :NHAVLIAPVLELFSQEYAENK 1vfsA 248 :PAMTLRASLALVKTVPAGHGV T0547 398 :DLQDR 1vfsA 269 :SYGHH T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLA 1vfsA 276 :TESETHLALVPAGYADGIPRNASGRGPVL T0547 437 :QERYL 1vfsA 305 :VAGKI T0547 463 :MPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPL 1vfsA 310 :RRAAGRIAMDQFVVDLGEDLAEAGDEAVILGDAER T0547 553 :AQSILDTLEDLDYDIHAIMD 1vfsA 346 :EPTAEDWAQAAHTIAYEIVT T0547 602 :DNGYLKSIGV 1vfsA 369 :GRVPRVYLGG Number of specific fragments extracted= 22 number of extra gaps= 0 total=9310 Will force an alignment to be made, even if fragment is small Number of alignments=400 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 50 :RFPHLIQKQIENIYGNFNK 1vfsA 12 :IDLDAVRANVRALRARAPR T0547 79 :FNAVYPLKVNQY 1vfsA 31 :SALMAVVKSNAY T0547 91 :PGFVKNLVKLGK 1vfsA 47 :VPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1vfsA 59 :AWLGTATPEEALELRAAGIQGR T0547 129 :ITVNGF 1vfsA 84 :WLWTPG T0547 139 :LINIGFIAAEM 1vfsA 90 :GPWREAIETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHSAGVGI 1vfsA 131 :DTGLGRNGC T0547 199 :GI 1vfsA 140 :QP T0547 206 :LTSTELIEAVNLLKENK 1vfsA 142 :ADWAELVGAAVAAQAEG T0547 224 :LEQFTMIHFHLGS 1vfsA 159 :TVQVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAG 1vfsA 176 :GHPSIRLQLDAFRDML T0547 256 :TE 1vfsA 192 :AY Number of specific fragments extracted= 14 number of extra gaps= 0 total=9324 Will force an alignment to be made, even if fragment is small Number of alignments=401 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 47 :LLLRFPHLIQKQIENIYGNFN 1vfsA 9 :YAEIDLDAVRANVRALRARAP T0547 78 :GFNAVYPLKVNQ 1vfsA 30 :RSALMAVVKSNA T0547 90 :YPGFVKNLVKLGK 1vfsA 46 :AVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1vfsA 59 :AWLGTATPEEALELRAAGIQGRIMCWLWTPGGP T0547 141 :NIGFIAAEM 1vfsA 92 :WREAIETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHSAGV 1vfsA 131 :DTGLGRN T0547 205 :GLTSTELIEAVNLLKENKL 1vfsA 138 :GCQPADWAELVGAAVAAQA T0547 224 :LEQFTMIHFHLGSQ 1vfsA 159 :TVQVTGVWSHFACA T0547 238 :ITEIHPLKKALNEAGNIYTELRKM 1vfsA 174 :EPGHPSIRLQLDAFRDMLAYAEKE T0547 263 :AKNLKAINL 1vfsA 198 :GVDPEVRHI T0547 307 :AEQKKD 1vfsA 241 :PAQLGL T0547 327 :ANHAVLIAPVLELFSQ 1vfsA 247 :RPAMTLRASLALVKTV T0547 343 :EYAENKLILKK 1vfsA 278 :SETHLALVPAG T0547 366 :YKSIKPS 1vfsA 289 :YADGIPR T0547 375 :LEYLHD 1vfsA 299 :GRGPVL T0547 381 :SIDHLES 1vfsA 309 :IRRAAGR T0547 390 :TLFDLGYVDLQDR 1vfsA 316 :IAMDQFVVDLGED T0547 403 :SNAEILTH 1vfsA 330 :AEAGDEAV T0547 420 :LGDKQNPADL 1vfsA 338 :ILGDAERGEP T0547 555 :SILDTLEDLDYDIHAIMD 1vfsA 348 :TAEDWAQAAHTIAYEIVT Number of specific fragments extracted= 22 number of extra gaps= 0 total=9346 Will force an alignment to be made, even if fragment is small Number of alignments=402 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 50 :RFPHLIQKQIENIYGNFN 1vfsA 12 :IDLDAVRANVRALRARAP T0547 78 :GFNAVYPLKVNQ 1vfsA 30 :RSALMAVVKSNA T0547 90 :YPGFVKNLVKLG 1vfsA 46 :AVPCARAAQEAG T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITVNG 1vfsA 58 :AAWLGTATPEEALELRAAGIQGRIMCWLW T0547 136 :DRELINIGFIAAEM 1vfsA 87 :TPGGPWREAIETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHSA 1vfsA 131 :DTGLG T0547 203 :KFGLTSTELIEAVNLLKEN 1vfsA 136 :RNGCQPADWAELVGAAVAA T0547 222 :K 1vfsA 158 :G T0547 224 :LEQFTMIHFHLGS 1vfsA 159 :TVQVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKE T0547 263 :AKNLKAINLGGGLAV 1vfsA 198 :GVDPEVRHIANSPAT T0547 299 :V 1vfsA 213 :L T0547 309 :QKKDLEPDIFI 1vfsA 214 :TLPETHFDLVR T0547 321 :SGRFVAA 1vfsA 225 :TGLAVYG T0547 328 :NHAVLIAPVLELFSQ 1vfsA 248 :PAMTLRASLALVKTV T0547 343 :EYAENKLILKKQNPKLIDELYDLYK 1vfsA 278 :SETHLALVPAGYADGIPRNASGRGP T0547 378 :LHDSIDHLESI 1vfsA 306 :AGKIRRAAGRI T0547 391 :LFDLGYVDLQDR 1vfsA 317 :AMDQFVVDLGED T0547 403 :SNAEILTHLIT 1vfsA 330 :AEAGDEAVILG Number of specific fragments extracted= 21 number of extra gaps= 0 total=9367 Will force an alignment to be made, even if fragment is small Number of alignments=403 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 50 :RFPHLIQKQIENIYGNFN 1vfsA 12 :IDLDAVRANVRALRARAP T0547 78 :GFNAVYPLKVN 1vfsA 30 :RSALMAVVKSN T0547 89 :QYPGFVKNLVKLGK 1vfsA 45 :GAVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELI 1vfsA 59 :AWLGTATPEEALELRAAGIQGRIMCWLWTPGGPWR T0547 143 :GFIAAEM 1vfsA 94 :EAIETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHS 1vfsA 131 :DTGL T0547 202 :SKFGLTSTELIEAVNL 1vfsA 135 :GRNGCQPADWAELVGA T0547 218 :LKENK 1vfsA 154 :AQAEG T0547 224 :LEQFTMIHFHLGS 1vfsA 159 :TVQVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKE T0547 263 :AKNLKAINL 1vfsA 198 :GVDPEVRHI T0547 283 :KNEK 1vfsA 239 :GTPA T0547 309 :QKKDL 1vfsA 243 :QLGLR T0547 328 :NHAVLIAPVLELFSQEY 1vfsA 248 :PAMTLRASLALVKTVPA T0547 345 :AENKLILKK 1vfsA 272 :HHYVTESET T0547 366 :YKSIKPSNALEYLHDSIDHLESI 1vfsA 281 :HLALVPAGYADGIPRNASGRGPV T0547 436 :VQERYLVNFSLFQSMPDF 1vfsA 304 :LVAGKIRRAAGRIAMDQF T0547 462 :IMPLDRLDEEPTRSASIW 1vfsA 322 :VVDLGEDLAEAGDEAVIL T0547 482 :TCDSDGEI 1vfsA 340 :GDAERGEP T0547 555 :SILDTLEDLDYDIHAIMD 1vfsA 348 :TAEDWAQAAHTIAYEIVT Number of specific fragments extracted= 22 number of extra gaps= 0 total=9389 Will force an alignment to be made, even if fragment is small Number of alignments=404 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 1vfsA 6 :TRVYAEIDLDAVRANVRALRARAP T0547 78 :GFNAVYPLKVNQ 1vfsA 30 :RSALMAVVKSNA T0547 90 :YPGFVKNLVKLGK 1vfsA 46 :AVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 1vfsA 59 :AWLGTATPEEALELRAAGIQGRIMCWLWTPG T0547 141 :NIGFIAAEM 1vfsA 92 :WREAIETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHSA 1vfsA 131 :DTGLG T0547 203 :KFGLTSTELIEAVNLLKEN 1vfsA 136 :RNGCQPADWAELVGAAVAA T0547 222 :K 1vfsA 158 :G T0547 224 :LEQFTMIHFHLGS 1vfsA 159 :TVQVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKE T0547 263 :AKNLKAINLGG 1vfsA 198 :GVDPEVRHIAN T0547 304 :KNIAEQKKDLEPDIFI 1vfsA 209 :SPATLTLPETHFDLVR T0547 321 :SGRFVAA 1vfsA 225 :TGLAVYG T0547 328 :NHAVLIAPVLELFSQEYAENK 1vfsA 248 :PAMTLRASLALVKTVPAGHGV T0547 396 :YVDLQ 1vfsA 269 :SYGHH T0547 403 :SNAEILTHLITKK 1vfsA 276 :TESETHLALVPAG T0547 421 :GDKQNPAD 1vfsA 289 :YADGIPRN T0547 436 :VQERYLVNFS 1vfsA 297 :ASGRGPVLVA T0547 457 :EQNFPI 1vfsA 307 :GKIRRA T0547 530 :FT 1vfsA 313 :AG T0547 532 :HPTEAIISINE 1vfsA 317 :AMDQFVVDLGE T0547 543 :KGYEVEGIIEAQS 1vfsA 332 :AGDEAVILGDAER T0547 556 :ILDTLEDLDYD 1vfsA 349 :AEDWAQAAHTI Number of specific fragments extracted= 25 number of extra gaps= 0 total=9414 Will force an alignment to be made, even if fragment is small Number of alignments=405 # 1vfsA read from all-align.a2m # found chain 1vfsA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfsA)A130 Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfsA)A130 T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 1vfsA 6 :TRVYAEIDLDAVRANVRALRARAP T0547 78 :GFNAVYPLKVNQ 1vfsA 30 :RSALMAVVKSNA T0547 90 :YPGFVKNLVKLGK 1vfsA 46 :AVPCARAAQEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 1vfsA 59 :AWLGTATPEEALELRAAGIQGRIMCWLWTPG T0547 141 :NIGFIAAEM 1vfsA 92 :WREAIETDI T0547 154 :TLTIEGLNELEAIIDIAKE 1vfsA 101 :DVSVSGMWALDEVRAAARA T0547 174 :FKPKPNIG 1vfsA 120 :AGRTARIQ T0547 185 :RLHS 1vfsA 131 :DTGL T0547 202 :SKFGLTSTELIEAVNLLKEN 1vfsA 135 :GRNGCQPADWAELVGAAVAA T0547 222 :K 1vfsA 158 :G T0547 224 :LEQFTMIHFHLGS 1vfsA 159 :TVQVTGVWSHFAC T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 1vfsA 173 :DEPGHPSIRLQLDAFRDMLAYAEKE T0547 263 :AKNLKAINLG 1vfsA 198 :GVDPEVRHIA T0547 304 :KNIAEQKKDLEPDIFI 1vfsA 209 :SPATLTLPETHFDLVR T0547 321 :SGRFVAA 1vfsA 225 :TGLAVYG T0547 328 :NHAVLIAPVLELFSQEYAENK 1vfsA 248 :PAMTLRASLALVKTVPAGHGV T0547 398 :DLQDR 1vfsA 269 :SYGHH T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLA 1vfsA 276 :TESETHLALVPAGYADGIPRNASGRGPVL T0547 437 :QERYL 1vfsA 305 :VAGKI T0547 463 :MPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPL 1vfsA 310 :RRAAGRIAMDQFVVDLGEDLAEAGDEAVILGDAER T0547 552 :EAQSILDTLEDLDYDIHAIMD 1vfsA 345 :GEPTAEDWAQAAHTIAYEIVT Number of specific fragments extracted= 21 number of extra gaps= 0 total=9435 Will force an alignment to be made, even if fragment is small Number of alignments=406 1w8gA expands to /projects/compbio/data/pdb/1w8g.pdb.gz 1w8gA:Skipped atom 62, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 63, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 64, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 65, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 66, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 85, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 86, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 87, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 88, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 89, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 90, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 91, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 92, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 110, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 111, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 112, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 113, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 114, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 151, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 152, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 153, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 154, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 387, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 388, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 389, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 390, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 391, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 392, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 393, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 394, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 404, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 405, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 406, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 407, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 408, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 722, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 723, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 724, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 725, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 726, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 727, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 728, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 870, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 871, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 872, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 873, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 874, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 875, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 876, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 877, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 898, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 899, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 900, because occupancy 0.500 <= existing 0.500 in 1w8gA Skipped atom 1546, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 1547, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 1548, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 1549, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 1550, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 1551, because occupancy 0.400 <= existing 0.600 in 1w8gA Skipped atom 1552, because occupancy 0.400 <= existing 0.600 in 1w8gA # 1w8gA read from all-align.a2m # adding 1w8gA to template set # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)N601 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYK 1w8gA 4 :IAHNLAQVRDKISAAATRCGRS T0547 77 :GGFNAVYPLKVNQ 1w8gA 27 :EEITLLAVSKTKP T0547 91 :PGFVKNLVKLGKD 1w8gA 40 :ASAIAEAIDAGQR T0547 104 :YNYGLEAGSKAELLLAMAYN 1w8gA 56 :ENYVQEGVDKIRHFQELGVT T0547 126 :GAPI 1w8gA 76 :GLEW T0547 133 :GFKDRELINIGFIAAEM 1w8gA 80 :HFIGPLQSNKSRLVAEH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLHSA 1w8gA 119 :ELPPLNVLIQINISDE T0547 201 :NSKFGLTSTELIEAVNLLKENKLLEQF 1w8gA 135 :NSKSGIQLAELDELAAAVAELPRLRLR T0547 228 :TMIHFHLGSQITE 1w8gA 163 :LMAIPAPESEYVR T0547 593 :LG 1w8gA 221 :IG T0547 596 :LYLFL 1w8gA 223 :TAIFG Number of specific fragments extracted= 12 number of extra gaps= 0 total=9447 Will force an alignment to be made, even if fragment is small Number of alignments=407 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 56 :QKQIENIYGNFNKARKEFGYK 1w8gA 5 :AHNLAQVRDKISAAATRCGRS T0547 77 :GGFNAVYPLKVNQ 1w8gA 27 :EEITLLAVSKTKP T0547 91 :PGFVKNLVKLGKD 1w8gA 40 :ASAIAEAIDAGQR T0547 104 :YNYGLEAGSKAELLLAMAYN 1w8gA 56 :ENYVQEGVDKIRHFQELGVT T0547 126 :GAPI 1w8gA 76 :GLEW T0547 133 :GFKDRELINIGFIAAEM 1w8gA 80 :HFIGPLQSNKSRLVAEH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLHSA 1w8gA 119 :ELPPLNVLIQINISDE T0547 201 :NSKFGLTSTELIEAVNLLKENKLLEQF 1w8gA 135 :NSKSGIQLAELDELAAAVAELPRLRLR T0547 228 :TMIHFHLGSQITEIHPLKKALNEAGNIYTE 1w8gA 163 :LMAIPAPESEYVRQFEVARQMAVAFAGLKT Number of specific fragments extracted= 10 number of extra gaps= 0 total=9457 Will force an alignment to be made, even if fragment is small Number of alignments=408 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)N601 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYK 1w8gA 4 :IAHNLAQVRDKISAAATRCGRS T0547 77 :GGFNAVYPLKVNQ 1w8gA 27 :EEITLLAVSKTKP T0547 91 :PGFVKNLVKLGKD 1w8gA 40 :ASAIAEAIDAGQR T0547 104 :YNYGLEAGSKAELLLAM 1w8gA 56 :ENYVQEGVDKIRHFQEL T0547 133 :GFKDRELINIGFIAAEMGHNI 1w8gA 73 :GVTGLEWHFIGPLQSNKSRLV T0547 154 :TLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAG 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISD T0547 201 :NSKFGLTSTELIEAVNLLKENKLLEQF 1w8gA 135 :NSKSGIQLAELDELAAAVAELPRLRLR T0547 228 :TMIHFHLGSQITEIHPLKKA 1w8gA 163 :LMAIPAPESEYVRQFEVARQ T0547 553 :AQSILDTLEDLDYD 1w8gA 183 :MAVAFAGLKTRYPH T0547 571 :MDILNERISNSKLVNDKQKKHI 1w8gA 197 :IDTLSLGMSDDMEAAIAAGSTM T0547 593 :LG 1w8gA 221 :IG T0547 596 :LYLFL 1w8gA 223 :TAIFG Number of specific fragments extracted= 12 number of extra gaps= 0 total=9469 Will force an alignment to be made, even if fragment is small Number of alignments=409 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 57 :KQIENIYGNFNKARKEFGYK 1w8gA 6 :HNLAQVRDKISAAATRCGRS T0547 77 :GGFNAVYPLKVNQ 1w8gA 27 :EEITLLAVSKTKP T0547 91 :PGFVKNLVKLGKD 1w8gA 40 :ASAIAEAIDAGQR T0547 104 :YNYGLEAGSKAELLLAM 1w8gA 56 :ENYVQEGVDKIRHFQEL T0547 133 :GFKDRELINIGFIAAEMGHNI 1w8gA 73 :GVTGLEWHFIGPLQSNKSRLV T0547 154 :TLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAG 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISD T0547 201 :NSKFGLTSTELIEAVNLLKENKLLEQF 1w8gA 135 :NSKSGIQLAELDELAAAVAELPRLRLR T0547 228 :TMIHFHLGSQITEIHPLKKALNEAGNIY 1w8gA 163 :LMAIPAPESEYVRQFEVARQMAVAFAGL Number of specific fragments extracted= 8 number of extra gaps= 0 total=9477 Will force an alignment to be made, even if fragment is small Number of alignments=410 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKD 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQR T0547 104 :YNYGLEAGSKAELLLAM 1w8gA 56 :ENYVQEGVDKIRHFQEL T0547 133 :GFKDRELINIGFIAA 1w8gA 73 :GVTGLEWHFIGPLQS T0547 148 :EMGHNITLTIEGLNELEAIIDIAKER 1w8gA 91 :RLVAEHFDWCHTIDRLRIATRLNDQR T0547 183 :RVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIH 1w8gA 117 :PAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMA T0547 234 :LGSQITEIHPLKKALNEAGNIYTELRKM 1w8gA 166 :IPAPESEYVRQFEVARQMAVAFAGLKTR T0547 265 :NLKAINLGGGLAVEYSQ 1w8gA 194 :YPHIDTLSLGMSDDMEA Number of specific fragments extracted= 7 number of extra gaps= 0 total=9484 Will force an alignment to be made, even if fragment is small Number of alignments=411 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 58 :QIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDY 1w8gA 7 :NLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQ T0547 105 :NYGLEAGSKAELLLAM 1w8gA 57 :NYVQEGVDKIRHFQEL T0547 133 :GFKDRELINIGFIAA 1w8gA 73 :GVTGLEWHFIGPLQS T0547 148 :EMGHNITLTIEGLNELEAIIDIAKER 1w8gA 91 :RLVAEHFDWCHTIDRLRIATRLNDQR T0547 183 :RVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQF 1w8gA 117 :PAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLR Number of specific fragments extracted= 5 number of extra gaps= 0 total=9489 Will force an alignment to be made, even if fragment is small Number of alignments=412 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)K415 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPL 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAV T0547 86 :KVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1w8gA 36 :KTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSN T0547 140 :INIGF 1w8gA 89 :KSRLV T0547 146 :AAEMGH 1w8gA 94 :AEHFDW T0547 153 :I 1w8gA 100 :C T0547 155 :LTIEGLNELEAIIDIAKE 1w8gA 101 :HTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLHS 1w8gA 119 :ELPPLNVLIQINISD T0547 200 :INSKFGLTSTELIEAVNLLKENKLL 1w8gA 134 :ENSKSGIQLAELDELAAAVAELPRL T0547 226 :QFTMIHF 1w8gA 159 :RLRGLMA T0547 234 :LGSQITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 166 :IPAPESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 282 :FKNEKSR 1w8gA 204 :MSDDMEA T0547 291 :TLRE 1w8gA 211 :AIAA T0547 345 :AENKLILKK 1w8gA 215 :GSTMVRIGT T0547 411 :LITK 1w8gA 224 :AIFG Number of specific fragments extracted= 15 number of extra gaps= 0 total=9504 Will force an alignment to be made, even if fragment is small Number of alignments=413 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)H532 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQ T0547 106 :YGL 1w8gA 52 :RQF T0547 113 :KAELLLAMAYNNEGAPITVNGFKDRELINIGF 1w8gA 63 :VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVA T0547 148 :E 1w8gA 95 :E T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVR 1w8gA 119 :ELPPLNVLIQIN T0547 197 :SGGINSKFGLTSTELIEAVNLLKENKLL 1w8gA 131 :ISDENSKSGIQLAELDELAAAVAELPRL T0547 226 :QFTMIHF 1w8gA 159 :RLRGLMA T0547 234 :LGSQITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 166 :IPAPESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 282 :FKNE 1w8gA 204 :MSDD T0547 304 :KNIAEQKKDLEPDI 1w8gA 208 :MEAAIAAGSTMVRI T0547 327 :ANH 1w8gA 222 :GTA T0547 529 :LFT 1w8gA 225 :IFG Number of specific fragments extracted= 14 number of extra gaps= 0 total=9518 Will force an alignment to be made, even if fragment is small Number of alignments=414 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)S387 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYKG 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSP T0547 78 :GFNAVYPLKVNQ 1w8gA 28 :EITLLAVSKTKP T0547 91 :PGFVKNLVKLGK 1w8gA 40 :ASAIAEAIDAGQ T0547 106 :YGL 1w8gA 52 :RQF T0547 109 :E 1w8gA 61 :E T0547 112 :SKAELLLAMAYNNEGAPITVNGFKDRE 1w8gA 62 :GVDKIRHFQELGVTGLEWHFIGPLQSN T0547 141 :NIGF 1w8gA 89 :KSRL T0547 146 :AAEM 1w8gA 93 :VAEH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVR 1w8gA 119 :ELPPLNVLIQIN T0547 197 :SGGINSKFGLTSTELIEAVNLLKENKLL 1w8gA 131 :ISDENSKSGIQLAELDELAAAVAELPRL T0547 226 :QFTMIHF 1w8gA 159 :RLRGLMA T0547 238 :ITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 170 :ESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 282 :FK 1w8gA 204 :MS T0547 313 :LEPDIFIESGRFVAA 1w8gA 206 :DDMEAAIAAGSTMVR T0547 336 :VLE 1w8gA 221 :IGT T0547 354 :Q 1w8gA 224 :A T0547 362 :LYD 1w8gA 225 :IFG Number of specific fragments extracted= 19 number of extra gaps= 0 total=9537 Will force an alignment to be made, even if fragment is small Number of alignments=415 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)H532 because last residue in template chain is (1w8gA)A228 T0547 36 :KEL 1w8gA 4 :IAH T0547 58 :QIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK 1w8gA 7 :NLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQ T0547 106 :YGLEAGSKAE 1w8gA 52 :RQFGENYVQE T0547 116 :LLLAMAYNNEGAPITVNGFKDRELINIGFIAA 1w8gA 66 :IRHFQELGVTGLEWHFIGPLQSNKSRLVAEHF T0547 152 :NITLTIEGLNELEAIIDIAKE 1w8gA 98 :DWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLH 1w8gA 119 :ELPPLNVLIQINIS T0547 199 :GINSKFGLTSTELIEAVNLLKENKLL 1w8gA 133 :DENSKSGIQLAELDELAAAVAELPRL T0547 226 :QFTMIHF 1w8gA 159 :RLRGLMA T0547 238 :ITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 170 :ESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 282 :FKNEK 1w8gA 204 :MSDDM T0547 305 :NIAEQKKDLEPDI 1w8gA 209 :EAAIAAGSTMVRI T0547 343 :EY 1w8gA 222 :GT T0547 528 :NLFT 1w8gA 224 :AIFG Number of specific fragments extracted= 14 number of extra gaps= 0 total=9551 Will force an alignment to be made, even if fragment is small Number of alignments=416 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)Y344 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQ T0547 106 :YGLEAGS 1w8gA 52 :RQFGENY T0547 113 :KAELLLAMAYNNEGAPITVNGFKDRE 1w8gA 63 :VDKIRHFQELGVTGLEWHFIGPLQSN T0547 141 :NIGF 1w8gA 89 :KSRL T0547 146 :AAEM 1w8gA 93 :VAEH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLHS 1w8gA 119 :ELPPLNVLIQINISD T0547 200 :INSKFGLTSTELIEAVNLLKENKLL 1w8gA 134 :ENSKSGIQLAELDELAAAVAELPRL T0547 226 :QFTMIHF 1w8gA 159 :RLRGLMA T0547 235 :GSQITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 167 :PAPESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 282 :FKN 1w8gA 204 :MSD T0547 291 :TLREYAND 1w8gA 207 :DMEAAIAA T0547 313 :L 1w8gA 215 :G T0547 315 :PDIFI 1w8gA 216 :STMVR T0547 321 :SGRFVA 1w8gA 221 :IGTAIF T0547 343 :E 1w8gA 227 :G Number of specific fragments extracted= 17 number of extra gaps= 0 total=9568 Will force an alignment to be made, even if fragment is small Number of alignments=417 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)I34 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)N328 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQ T0547 106 :YGLEAGSKAE 1w8gA 52 :RQFGENYVQE T0547 116 :LLLAMAYNNEGAPITVNGFKDRELINIGF 1w8gA 66 :IRHFQELGVTGLEWHFIGPLQSNKSRLVA T0547 146 :AA 1w8gA 95 :EH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLH 1w8gA 119 :ELPPLNVLIQINIS T0547 199 :GINSKFGLTSTELIEAVNLLKENKLL 1w8gA 133 :DENSKSGIQLAELDELAAAVAELPRL T0547 226 :QFTMIHF 1w8gA 159 :RLRGLMA T0547 234 :LGSQITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 166 :IPAPESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 282 :FKNEK 1w8gA 204 :MSDDM T0547 305 :NIAEQKKDLEPDI 1w8gA 209 :EAAIAAGSTMVRI T0547 322 :GRFVAA 1w8gA 222 :GTAIFG Number of specific fragments extracted= 13 number of extra gaps= 0 total=9581 Will force an alignment to be made, even if fragment is small Number of alignments=418 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 130 :TVNGFKDRE 1w8gA 80 :HFIGPLQSN T0547 140 :INIGF 1w8gA 89 :KSRLV T0547 146 :AAEMGH 1w8gA 94 :AEHFDW T0547 153 :I 1w8gA 100 :C T0547 155 :LTIEGLNELEAIIDIAKE 1w8gA 101 :HTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLHS 1w8gA 119 :ELPPLNVLIQINISD T0547 200 :INSKFGLTSTELIEAVNLLKENKLL 1w8gA 134 :ENSKSGIQLAELDELAAAVAELPRL T0547 226 :QFTMIHF 1w8gA 159 :RLRGLMA T0547 234 :LGSQITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 166 :IPAPESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG Number of specific fragments extracted= 10 number of extra gaps= 0 total=9591 Will force an alignment to be made, even if fragment is small Number of alignments=419 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQ T0547 106 :YGL 1w8gA 52 :RQF T0547 113 :KAELLLAMAYNNEGAPITVNGFKDRELINIGF 1w8gA 63 :VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVA T0547 148 :E 1w8gA 95 :E T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVR 1w8gA 119 :ELPPLNVLIQIN T0547 197 :SGGINSKFGLTSTELIEAVNLLKENKLL 1w8gA 131 :ISDENSKSGIQLAELDELAAAVAELPRL T0547 226 :QFTMIHF 1w8gA 159 :RLRGLMA T0547 234 :LGSQITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 166 :IPAPESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 282 :FKNE 1w8gA 204 :MSDD T0547 304 :KNIAEQKKDLEPD 1w8gA 208 :MEAAIAAGSTMVR Number of specific fragments extracted= 12 number of extra gaps= 0 total=9603 Will force an alignment to be made, even if fragment is small Number of alignments=420 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 58 :QIENIYGNFNKARKEFGYKG 1w8gA 7 :NLAQVRDKISAAATRCGRSP T0547 78 :GFNAVYPLKVNQ 1w8gA 28 :EITLLAVSKTKP T0547 91 :PGFVKNLVKLGK 1w8gA 40 :ASAIAEAIDAGQ T0547 106 :YGL 1w8gA 52 :RQF T0547 109 :E 1w8gA 61 :E T0547 112 :SKAELLLAMAYNNEGAPITVNGFKDRE 1w8gA 62 :GVDKIRHFQELGVTGLEWHFIGPLQSN T0547 141 :NIGF 1w8gA 89 :KSRL T0547 146 :AAEM 1w8gA 93 :VAEH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVR 1w8gA 119 :ELPPLNVLIQIN T0547 197 :SGGINSKFGLTSTELIEAVNLLKENKLL 1w8gA 131 :ISDENSKSGIQLAELDELAAAVAELPRL T0547 226 :QFTMIHF 1w8gA 159 :RLRGLMA T0547 238 :ITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 170 :ESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG Number of specific fragments extracted= 14 number of extra gaps= 0 total=9617 Will force an alignment to be made, even if fragment is small Number of alignments=421 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 58 :QIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK 1w8gA 7 :NLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQ T0547 106 :YGLEAGSKAE 1w8gA 52 :RQFGENYVQE T0547 116 :LLLAMAYNNEGAPITVNGFKDRELINIGFIAA 1w8gA 66 :IRHFQELGVTGLEWHFIGPLQSNKSRLVAEHF T0547 152 :NITLTIEGLNELEAIIDIAKE 1w8gA 98 :DWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLH 1w8gA 119 :ELPPLNVLIQINIS T0547 199 :GINSKFGLTSTELIEAVNLLKENKLL 1w8gA 133 :DENSKSGIQLAELDELAAAVAELPRL T0547 226 :QFTMIHF 1w8gA 159 :RLRGLMA T0547 238 :ITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 170 :ESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 282 :FKNEK 1w8gA 204 :MSDDM T0547 305 :NIAEQKKDLEPD 1w8gA 209 :EAAIAAGSTMVR Number of specific fragments extracted= 11 number of extra gaps= 0 total=9628 Will force an alignment to be made, even if fragment is small Number of alignments=422 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQ T0547 106 :YGLEAGS 1w8gA 52 :RQFGENY T0547 113 :KAELLLAMAYNNEGAPITVNGFKDRE 1w8gA 63 :VDKIRHFQELGVTGLEWHFIGPLQSN T0547 141 :NIGF 1w8gA 89 :KSRL T0547 146 :AAEM 1w8gA 93 :VAEH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLHS 1w8gA 119 :ELPPLNVLIQINISD T0547 200 :INSKFGLTSTELIEAVNLLKENKLL 1w8gA 134 :ENSKSGIQLAELDELAAAVAELPRL T0547 226 :QFTMIHF 1w8gA 159 :RLRGLMA T0547 235 :GSQITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 167 :PAPESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG Number of specific fragments extracted= 11 number of extra gaps= 0 total=9639 Will force an alignment to be made, even if fragment is small Number of alignments=423 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQ T0547 106 :YGLEAGSKAE 1w8gA 52 :RQFGENYVQE T0547 116 :LLLAMAYNNEGAPITVNGFKDRELINIGF 1w8gA 66 :IRHFQELGVTGLEWHFIGPLQSNKSRLVA T0547 146 :AA 1w8gA 95 :EH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLH 1w8gA 119 :ELPPLNVLIQINIS T0547 199 :GINSKFGLTSTELIEAVNLLKENKLL 1w8gA 133 :DENSKSGIQLAELDELAAAVAELPRL T0547 226 :QFTMIHF 1w8gA 159 :RLRGLMA T0547 234 :LGSQITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 166 :IPAPESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 282 :FKNE 1w8gA 204 :MSDD T0547 292 :L 1w8gA 208 :M T0547 305 :NIAEQKKDLEPD 1w8gA 209 :EAAIAAGSTMVR Number of specific fragments extracted= 13 number of extra gaps= 0 total=9652 Will force an alignment to be made, even if fragment is small Number of alignments=424 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)D393 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYKG 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1w8gA 28 :EITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVA T0547 148 :EMGHNIT 1w8gA 95 :EHFDWCH T0547 156 :TIEGLNELEAIIDIAKE 1w8gA 102 :TIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLHSAGV 1w8gA 119 :ELPPLNVLIQINISDENS T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 1w8gA 137 :KSGIQLAELDELAAAVAELPRLRLRG T0547 230 :IHFHLG 1w8gA 163 :LMAIPA T0547 240 :EIHPLKKALNEAGNIYTELR 1w8gA 169 :PESEYVRQFEVARQMAVAFA T0547 260 :KMGAKNLKAINLG 1w8gA 191 :KTRYPHIDTLSLG T0547 281 :QF 1w8gA 205 :SD T0547 291 :TLREYAN 1w8gA 207 :DMEAAIA T0547 329 :HAVLIAPVLE 1w8gA 214 :AGSTMVRIGT T0547 361 :ELYD 1w8gA 224 :AIFG Number of specific fragments extracted= 13 number of extra gaps= 0 total=9665 Will force an alignment to be made, even if fragment is small Number of alignments=425 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)T390 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYKG 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSP T0547 78 :GFNAVYPLKVNQ 1w8gA 28 :EITLLAVSKTKP T0547 91 :PGFVKNLVKLGK 1w8gA 40 :ASAIAEAIDAGQ T0547 106 :YGLEAGSKAE 1w8gA 52 :RQFGENYVQE T0547 116 :LLLAMAYNNEGAPITVNGFKDRELINIGF 1w8gA 66 :IRHFQELGVTGLEWHFIGPLQSNKSRLVA T0547 148 :E 1w8gA 95 :E T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1w8gA 96 :HFDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVR 1w8gA 119 :ELPPLNVLIQIN T0547 197 :SGGINSKFGLTSTELIEAVNLLKENKLLEQFT 1w8gA 131 :ISDENSKSGIQLAELDELAAAVAELPRLRLRG T0547 230 :IHFHLG 1w8gA 163 :LMAIPA T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 169 :PESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 273 :G 1w8gA 206 :D T0547 291 :TL 1w8gA 207 :DM T0547 305 :NIAEQKKD 1w8gA 209 :EAAIAAGS T0547 346 :E 1w8gA 217 :T T0547 348 :KLILKK 1w8gA 218 :MVRIGT T0547 354 :QNP 1w8gA 225 :IFG Number of specific fragments extracted= 18 number of extra gaps= 0 total=9683 Will force an alignment to be made, even if fragment is small Number of alignments=426 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)K20 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)E343 because last residue in template chain is (1w8gA)A228 T0547 21 :VCI 1w8gA 4 :IAH T0547 58 :QIENIYGNFNKARKEFGYKG 1w8gA 7 :NLAQVRDKISAAATRCGRSP T0547 78 :GFNAVYPLKVNQ 1w8gA 28 :EITLLAVSKTKP T0547 91 :PGFVKNLVKLGK 1w8gA 40 :ASAIAEAIDAGQ T0547 106 :YGL 1w8gA 52 :RQF T0547 112 :SKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1w8gA 62 :GVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVA T0547 148 :EM 1w8gA 95 :EH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVR 1w8gA 119 :ELPPLNVLIQIN T0547 197 :SGGINSKFGLTSTELIEAVNLLKENKLLEQFT 1w8gA 131 :ISDENSKSGIQLAELDELAAAVAELPRLRLRG T0547 230 :IHF 1w8gA 163 :LMA T0547 238 :ITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 170 :ESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 313 :LEPDIFIESG 1w8gA 206 :DDMEAAIAAG T0547 331 :VLIAPVLELFSQ 1w8gA 216 :STMVRIGTAIFG Number of specific fragments extracted= 15 number of extra gaps= 0 total=9698 Will force an alignment to be made, even if fragment is small Number of alignments=427 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)L394 because last residue in template chain is (1w8gA)A228 T0547 31 :II 1w8gA 4 :IA T0547 57 :KQIENIYGNFNKARKEFGYKG 1w8gA 6 :HNLAQVRDKISAAATRCGRSP T0547 78 :GFNAVYPLKVNQ 1w8gA 28 :EITLLAVSKTKP T0547 91 :PGFVKNLVKLGK 1w8gA 40 :ASAIAEAIDAGQ T0547 106 :YGLEAGSKAE 1w8gA 52 :RQFGENYVQE T0547 116 :LLLAMAYNNEGAPITVNGFKDRELINIGFIAA 1w8gA 66 :IRHFQELGVTGLEWHFIGPLQSNKSRLVAEHF T0547 152 :NITLTIEGLNELEAIIDIAKE 1w8gA 98 :DWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLHSAGV 1w8gA 119 :ELPPLNVLIQINISDENS T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 1w8gA 137 :KSGIQLAELDELAAAVAELPRLRLRG T0547 230 :IHF 1w8gA 163 :LMA T0547 238 :ITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 170 :ESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 291 :TLREY 1w8gA 204 :MSDDM T0547 305 :NIAEQKKDLEPDI 1w8gA 209 :EAAIAAGSTMVRI T0547 343 :E 1w8gA 222 :G T0547 389 :LTLFD 1w8gA 223 :TAIFG Number of specific fragments extracted= 16 number of extra gaps= 0 total=9714 Will force an alignment to be made, even if fragment is small Number of alignments=428 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)L394 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYKG 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSP T0547 78 :GFNAVYPLKVNQ 1w8gA 28 :EITLLAVSKTKP T0547 91 :PGFVKNLVKLGK 1w8gA 40 :ASAIAEAIDAGQ T0547 106 :YGLEAGSKAELLLAMA 1w8gA 52 :RQFGENYVQEGVDKIR T0547 122 :YNNEGAPITVNGFKDRELINIGF 1w8gA 72 :LGVTGLEWHFIGPLQSNKSRLVA T0547 148 :EM 1w8gA 95 :EH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLH 1w8gA 119 :ELPPLNVLIQINIS T0547 199 :GINSKFGLTSTELIEAVNLLKENKLLEQFT 1w8gA 133 :DENSKSGIQLAELDELAAAVAELPRLRLRG T0547 230 :IHFHLG 1w8gA 163 :LMAIPA T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 169 :PESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 281 :Q 1w8gA 206 :D T0547 291 :TLREYAND 1w8gA 207 :DMEAAIAA T0547 311 :KD 1w8gA 215 :GS T0547 316 :DIFI 1w8gA 217 :TMVR T0547 351 :LK 1w8gA 221 :IG T0547 360 :D 1w8gA 223 :T T0547 390 :TLFD 1w8gA 224 :AIFG Number of specific fragments extracted= 19 number of extra gaps= 0 total=9733 Will force an alignment to be made, even if fragment is small Number of alignments=429 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)L394 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYKG 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSP T0547 78 :GFNAVYPLKVNQ 1w8gA 28 :EITLLAVSKTKP T0547 91 :PGFVKNLVKLGK 1w8gA 40 :ASAIAEAIDAGQ T0547 106 :YGLEAGSKAE 1w8gA 52 :RQFGENYVQE T0547 116 :LLLAMAYNNEGAPITVNGFKDRELINIGF 1w8gA 66 :IRHFQELGVTGLEWHFIGPLQSNKSRLVA T0547 148 :EM 1w8gA 95 :EH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLH 1w8gA 119 :ELPPLNVLIQINIS T0547 199 :GINSKFGLTSTELIEAVNLLKENKLLEQFT 1w8gA 133 :DENSKSGIQLAELDELAAAVAELPRLRLRG T0547 230 :IHFHLG 1w8gA 163 :LMAIPA T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 169 :PESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 281 :QF 1w8gA 205 :SD T0547 291 :TLREY 1w8gA 207 :DMEAA T0547 308 :EQKKDLEPDI 1w8gA 212 :IAAGSTMVRI T0547 352 :K 1w8gA 222 :G T0547 389 :LTLFD 1w8gA 223 :TAIFG Number of specific fragments extracted= 17 number of extra gaps= 0 total=9750 Will force an alignment to be made, even if fragment is small Number of alignments=430 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 T0547 55 :IQKQIENIYGNFNKARKEFGYKG 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1w8gA 28 :EITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVA T0547 148 :EMGHNIT 1w8gA 95 :EHFDWCH T0547 156 :TIEGLNELEAIIDIAKE 1w8gA 102 :TIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLHSAGV 1w8gA 119 :ELPPLNVLIQINISDENS T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 1w8gA 137 :KSGIQLAELDELAAAVAELPRLRLRG T0547 230 :IHFHLG 1w8gA 163 :LMAIPA T0547 240 :EIHPLKKALNEAGNIYTELR 1w8gA 169 :PESEYVRQFEVARQMAVAFA T0547 260 :KMGAKNLKAINLG 1w8gA 191 :KTRYPHIDTLSLG Number of specific fragments extracted= 9 number of extra gaps= 0 total=9759 Will force an alignment to be made, even if fragment is small Number of alignments=431 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 T0547 55 :IQKQIENIYGNFNKARKEFGYKG 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSP T0547 78 :GFNAVYPLKVNQ 1w8gA 28 :EITLLAVSKTKP T0547 91 :PGFVKNLVKLGK 1w8gA 40 :ASAIAEAIDAGQ T0547 106 :YGLEAGSKAE 1w8gA 52 :RQFGENYVQE T0547 116 :LLLAMAYNNEGAPITVNGFKDRELINIGF 1w8gA 66 :IRHFQELGVTGLEWHFIGPLQSNKSRLVA T0547 148 :E 1w8gA 95 :E T0547 150 :GHNITLTIEGLNELEAIIDIAKE 1w8gA 96 :HFDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVR 1w8gA 119 :ELPPLNVLIQIN T0547 197 :SGGINSKFGLTSTELIEAVNLLKENKLLEQFT 1w8gA 131 :ISDENSKSGIQLAELDELAAAVAELPRLRLRG T0547 230 :IHFHLG 1w8gA 163 :LMAIPA T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 169 :PESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 273 :G 1w8gA 206 :D T0547 291 :TLR 1w8gA 207 :DME T0547 306 :IAEQKKDLEPD 1w8gA 210 :AAIAAGSTMVR Number of specific fragments extracted= 15 number of extra gaps= 0 total=9774 Will force an alignment to be made, even if fragment is small Number of alignments=432 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 58 :QIENIYGNFNKARKEFGYKG 1w8gA 7 :NLAQVRDKISAAATRCGRSP T0547 78 :GFNAVYPLKVNQ 1w8gA 28 :EITLLAVSKTKP T0547 91 :PGFVKNLVKLGK 1w8gA 40 :ASAIAEAIDAGQ T0547 106 :YGL 1w8gA 52 :RQF T0547 112 :SKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1w8gA 62 :GVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVA T0547 148 :EM 1w8gA 95 :EH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVR 1w8gA 119 :ELPPLNVLIQIN T0547 197 :SGGINSKFGLTSTELIEAVNLLKENKLLEQFT 1w8gA 131 :ISDENSKSGIQLAELDELAAAVAELPRLRLRG T0547 230 :IHF 1w8gA 163 :LMA T0547 238 :ITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 170 :ESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 313 :LEPDIFIESG 1w8gA 206 :DDMEAAIAAG Number of specific fragments extracted= 13 number of extra gaps= 0 total=9787 Will force an alignment to be made, even if fragment is small Number of alignments=433 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 58 :QIENIYGNFNKARKEFGYKG 1w8gA 7 :NLAQVRDKISAAATRCGRSP T0547 78 :GFNAVYPLKVNQ 1w8gA 28 :EITLLAVSKTKP T0547 91 :PGFVKNLVKLGK 1w8gA 40 :ASAIAEAIDAGQ T0547 106 :YGLEAGSKAE 1w8gA 52 :RQFGENYVQE T0547 116 :LLLAMAYNNEGAPITVNGFKDRELINIGFIAA 1w8gA 66 :IRHFQELGVTGLEWHFIGPLQSNKSRLVAEHF T0547 152 :NITLTIEGLNELEAIIDIAKE 1w8gA 98 :DWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLHSAGV 1w8gA 119 :ELPPLNVLIQINISDENS T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 1w8gA 137 :KSGIQLAELDELAAAVAELPRLRLRG T0547 230 :IHF 1w8gA 163 :LMA T0547 238 :ITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 170 :ESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 291 :TLREY 1w8gA 204 :MSDDM T0547 305 :NIAEQKKDLEPDI 1w8gA 209 :EAAIAAGSTMVRI T0547 322 :GR 1w8gA 222 :GT Number of specific fragments extracted= 14 number of extra gaps= 0 total=9801 Will force an alignment to be made, even if fragment is small Number of alignments=434 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 56 :QKQIENIYGNFNKARKEFGYKG 1w8gA 5 :AHNLAQVRDKISAAATRCGRSP T0547 78 :GFNAVYPLKVNQ 1w8gA 28 :EITLLAVSKTKP T0547 91 :PGFVKNLVKLGK 1w8gA 40 :ASAIAEAIDAGQ T0547 106 :YGLEAGSKAELLLAMA 1w8gA 52 :RQFGENYVQEGVDKIR T0547 122 :YNNEGAPITVNGFKDRELINIGF 1w8gA 72 :LGVTGLEWHFIGPLQSNKSRLVA T0547 148 :EM 1w8gA 95 :EH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLH 1w8gA 119 :ELPPLNVLIQINIS T0547 199 :GINSKFGLTSTELIEAVNLLKENKLLEQFT 1w8gA 133 :DENSKSGIQLAELDELAAAVAELPRLRLRG T0547 230 :IHFHLG 1w8gA 163 :LMAIPA T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 169 :PESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 281 :Q 1w8gA 206 :D T0547 291 :TLREYAND 1w8gA 207 :DMEAAIAA T0547 311 :KD 1w8gA 215 :GS T0547 316 :DIFI 1w8gA 217 :TMVR Number of specific fragments extracted= 16 number of extra gaps= 0 total=9817 Will force an alignment to be made, even if fragment is small Number of alignments=435 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 55 :IQKQIENIYGNFNKARKEFGYKG 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSP T0547 78 :GFNAVYPLKVNQ 1w8gA 28 :EITLLAVSKTKP T0547 91 :PGFVKNLVKLGK 1w8gA 40 :ASAIAEAIDAGQ T0547 106 :YGLEAGSKAE 1w8gA 52 :RQFGENYVQE T0547 116 :LLLAMAYNNEGAPITVNGFKDRELINIGF 1w8gA 66 :IRHFQELGVTGLEWHFIGPLQSNKSRLVA T0547 148 :EM 1w8gA 95 :EH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRLH 1w8gA 119 :ELPPLNVLIQINIS T0547 199 :GINSKFGLTSTELIEAVNLLKENKLLEQFT 1w8gA 133 :DENSKSGIQLAELDELAAAVAELPRLRLRG T0547 230 :IHFHLG 1w8gA 163 :LMAIPA T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 1w8gA 169 :PESEYVRQFEVARQMAVAFAGLKTRYP T0547 265 :NLKAINLG 1w8gA 196 :HIDTLSLG T0547 281 :QF 1w8gA 205 :SD T0547 291 :TLREYA 1w8gA 207 :DMEAAI T0547 309 :QKKDLEPDI 1w8gA 213 :AAGSTMVRI T0547 322 :G 1w8gA 222 :G Number of specific fragments extracted= 16 number of extra gaps= 0 total=9833 Will force an alignment to be made, even if fragment is small Number of alignments=436 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)L419 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPL 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAV T0547 86 :KVNQYPGFVKNLVKLGKDYN 1w8gA 36 :KTKPASAIAEAIDAGQRQFG T0547 111 :GSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1w8gA 61 :EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDW T0547 154 :TLTIEGLNELEAIIDIAKE 1w8gA 100 :CHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRL 1w8gA 119 :ELPPLNVLIQINI T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 1w8gA 132 :SDENSKSGIQLAELDELAAAVAELP T0547 224 :LEQFTMIHFHLG 1w8gA 157 :RLRLRGLMAIPA T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 1w8gA 169 :PESEYVRQFEVARQMAVAFAGLKTR T0547 263 :AKNLKAINLG 1w8gA 194 :YPHIDTLSLG T0547 396 :YVDLQDR 1w8gA 204 :MSDDMEA T0547 403 :SNAEILTHLITKKAIL 1w8gA 212 :IAAGSTMVRIGTAIFG Number of specific fragments extracted= 11 number of extra gaps= 0 total=9844 Will force an alignment to be made, even if fragment is small Number of alignments=437 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)K357 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPL 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAV T0547 86 :KVNQYPGF 1w8gA 36 :KTKPASAI T0547 95 :KNLVKLGKDYN 1w8gA 44 :AEAIDAGQRQF T0547 113 :KAELLLAMAYNNEGAPITVNGFKDRELINIGFIA 1w8gA 63 :VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRL 1w8gA 119 :ELPPLNVLIQINI T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 1w8gA 132 :SDENSKSGIQLAELDELAAAVAELP T0547 224 :LEQFTMIHF 1w8gA 157 :RLRLRGLMA T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1w8gA 171 :SEYVRQFEVARQMAVAFAGLKTR T0547 263 :AKNLKAINLG 1w8gA 194 :YPHIDTLSLG T0547 284 :NEKSRNYTLR 1w8gA 204 :MSDDMEAAIA T0547 343 :EYAENKLILKKQNP 1w8gA 214 :AGSTMVRIGTAIFG Number of specific fragments extracted= 12 number of extra gaps= 0 total=9856 Will force an alignment to be made, even if fragment is small Number of alignments=438 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)E343 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPL 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAV T0547 86 :KVNQYPG 1w8gA 36 :KTKPASA T0547 94 :VKNLVKLG 1w8gA 43 :IAEAIDAG T0547 106 :YG 1w8gA 51 :QR T0547 113 :KAELLLAMAYNNEGA 1w8gA 59 :VQEGVDKIRHFQELG T0547 128 :PITVNGFKDRELINIGFIAAEM 1w8gA 78 :EWHFIGPLQSNKSRLVAEHFDW T0547 154 :TLTIEGLNELEAIIDIAKE 1w8gA 100 :CHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRL 1w8gA 119 :ELPPLNVLIQINI T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 1w8gA 132 :SDENSKSGIQLAELDELAAAVAELP T0547 224 :LEQFTMIHF 1w8gA 157 :RLRLRGLMA T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1w8gA 171 :SEYVRQFEVARQMAVAFAGLKTR T0547 263 :AKNLKAINLG 1w8gA 194 :YPHIDTLSLG T0547 292 :LREYANDVV 1w8gA 204 :MSDDMEAAI T0547 328 :NHAVLIAPVLELFSQ 1w8gA 213 :AAGSTMVRIGTAIFG Number of specific fragments extracted= 14 number of extra gaps= 0 total=9870 Will force an alignment to be made, even if fragment is small Number of alignments=439 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)S387 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYN 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQF T0547 112 :SKAEL 1w8gA 58 :YVQEG T0547 117 :LLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1w8gA 67 :RHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDW T0547 154 :TLTIEGLNELEAIIDIAKE 1w8gA 100 :CHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRL 1w8gA 119 :ELPPLNVLIQINI T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 1w8gA 132 :SDENSKSGIQLAELDELAAAVAELP T0547 224 :LEQFTMIHF 1w8gA 157 :RLRLRGLMA T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1w8gA 171 :SEYVRQFEVARQMAVAFAGLKTR T0547 263 :AKNLKAINLG 1w8gA 194 :YPHIDTLSLG T0547 292 :LRE 1w8gA 205 :SDD T0547 304 :KNIAEQKKDLEPDI 1w8gA 208 :MEAAIAAGSTMVRI T0547 337 :L 1w8gA 222 :G T0547 382 :IDHLE 1w8gA 223 :TAIFG Number of specific fragments extracted= 13 number of extra gaps= 0 total=9883 Will force an alignment to be made, even if fragment is small Number of alignments=440 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)D428 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYKGG 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPE T0547 79 :FNAVYPLKVNQY 1w8gA 29 :ITLLAVSKTKPA T0547 92 :GFVKNLVKLG 1w8gA 41 :SAIAEAIDAG T0547 106 :YGL 1w8gA 51 :QRQ T0547 113 :KAELLLAMAYNNEGAPITVNGFKDRELINIGF 1w8gA 63 :VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVA T0547 146 :AA 1w8gA 95 :EH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRL 1w8gA 119 :ELPPLNVLIQINI T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 1w8gA 132 :SDENSKSGIQLAELDELAAAVAELP T0547 224 :LEQFTMIHF 1w8gA 157 :RLRLRGLMA T0547 238 :ITEIHPLKKALNEAGNIYTELRKM 1w8gA 170 :ESEYVRQFEVARQMAVAFAGLKTR T0547 263 :AKNLKAINLG 1w8gA 194 :YPHIDTLSLG T0547 288 :RNYTLREYAND 1w8gA 204 :MSDDMEAAIAA T0547 314 :EPD 1w8gA 215 :GST T0547 409 :THLITKKAIL 1w8gA 218 :MVRIGTAIFG Number of specific fragments extracted= 15 number of extra gaps= 0 total=9898 Will force an alignment to be made, even if fragment is small Number of alignments=441 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 Warning: unaligning (T0547)S387 because last residue in template chain is (1w8gA)A228 T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPL 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAV T0547 86 :KVNQY 1w8gA 36 :KTKPA T0547 92 :GFVKNLVKLGK 1w8gA 41 :SAIAEAIDAGQ T0547 106 :YGLEAGSKAEL 1w8gA 52 :RQFGENYVQEG T0547 117 :LLAMAYNNEGAPITVNGFKDRELINIGFIA 1w8gA 67 :RHFQELGVTGLEWHFIGPLQSNKSRLVAEH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRL 1w8gA 119 :ELPPLNVLIQINI T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 1w8gA 132 :SDENSKSGIQLAELDELAAAVAELP T0547 224 :LEQFTMIHF 1w8gA 157 :RLRLRGLMA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKM 1w8gA 168 :APESEYVRQFEVARQMAVAFAGLKTR T0547 263 :AKNLKAINLG 1w8gA 194 :YPHIDTLSLG T0547 284 :NEKS 1w8gA 204 :MSDD T0547 304 :KNIAEQKKDLEPDI 1w8gA 208 :MEAAIAAGSTMVRI T0547 324 :FVA 1w8gA 224 :AIF T0547 386 :E 1w8gA 227 :G Number of specific fragments extracted= 15 number of extra gaps= 0 total=9913 Will force an alignment to be made, even if fragment is small Number of alignments=442 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 122 :YNNEGAPITVNGFKDRELINIGFIAAEM 1w8gA 72 :LGVTGLEWHFIGPLQSNKSRLVAEHFDW T0547 154 :TLTIEGLNELEAIIDIAKE 1w8gA 100 :CHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRL 1w8gA 119 :ELPPLNVLIQINI T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 1w8gA 132 :SDENSKSGIQLAELDELAAAVAELP T0547 224 :LEQFTMIH 1w8gA 157 :RLRLRGLM Number of specific fragments extracted= 5 number of extra gaps= 0 total=9918 Will force an alignment to be made, even if fragment is small Number of alignments=443 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPL 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAV T0547 86 :KVNQYPGF 1w8gA 36 :KTKPASAI T0547 95 :KNLVKLGKDYN 1w8gA 44 :AEAIDAGQRQF T0547 113 :KAELLLAMAYNNEGAPITVNGFKDRELINIGFIA 1w8gA 63 :VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRL 1w8gA 119 :ELPPLNVLIQINI T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 1w8gA 132 :SDENSKSGIQLAELDELAAAVAELP T0547 224 :LEQFTMIHF 1w8gA 157 :RLRLRGLMA T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1w8gA 171 :SEYVRQFEVARQMAVAFAGLKTR T0547 263 :AKNLKAINLG 1w8gA 194 :YPHIDTLSLG T0547 284 :NEKS 1w8gA 204 :MSDD T0547 304 :KNIAEQKKDLEPD 1w8gA 208 :MEAAIAAGSTMVR Number of specific fragments extracted= 12 number of extra gaps= 0 total=9930 Will force an alignment to be made, even if fragment is small Number of alignments=444 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set Warning: unaligning (T0547)L54 because first residue in template chain is (1w8gA)D3 T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPL 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAV T0547 86 :KVNQYPG 1w8gA 36 :KTKPASA T0547 94 :VKNLVKLG 1w8gA 43 :IAEAIDAG T0547 106 :YG 1w8gA 51 :QR T0547 113 :KAELLLAMAYNNEGA 1w8gA 59 :VQEGVDKIRHFQELG T0547 128 :PITVNGFKDRELINIGFIAAEM 1w8gA 78 :EWHFIGPLQSNKSRLVAEHFDW T0547 154 :TLTIEGLNELEAIIDIAKE 1w8gA 100 :CHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRL 1w8gA 119 :ELPPLNVLIQINI T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 1w8gA 132 :SDENSKSGIQLAELDELAAAVAELP T0547 224 :LEQFTMIHF 1w8gA 157 :RLRLRGLMA T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1w8gA 171 :SEYVRQFEVARQMAVAFAGLKTR T0547 263 :AKNLKAINLG 1w8gA 194 :YPHIDTLSLG Number of specific fragments extracted= 12 number of extra gaps= 0 total=9942 Will force an alignment to be made, even if fragment is small Number of alignments=445 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 57 :KQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYN 1w8gA 6 :HNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQF T0547 112 :SKAEL 1w8gA 58 :YVQEG T0547 117 :LLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 1w8gA 67 :RHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDW T0547 154 :TLTIEGLNELEAIIDIAKE 1w8gA 100 :CHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRL 1w8gA 119 :ELPPLNVLIQINI T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 1w8gA 132 :SDENSKSGIQLAELDELAAAVAELP T0547 224 :LEQFTMIHF 1w8gA 157 :RLRLRGLMA T0547 239 :TEIHPLKKALNEAGNIYTELRKM 1w8gA 171 :SEYVRQFEVARQMAVAFAGLKTR T0547 263 :AKNLKAINLG 1w8gA 194 :YPHIDTLSLG T0547 292 :LRE 1w8gA 205 :SDD T0547 304 :KNIAEQKKDLEPDI 1w8gA 208 :MEAAIAAGSTMVRI Number of specific fragments extracted= 11 number of extra gaps= 0 total=9953 Will force an alignment to be made, even if fragment is small Number of alignments=446 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 55 :IQKQIENIYGNFNKARKEFGYKGG 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPE T0547 79 :FNAVYPLKVNQY 1w8gA 29 :ITLLAVSKTKPA T0547 92 :GFVKNLVKLG 1w8gA 41 :SAIAEAIDAG T0547 106 :YGL 1w8gA 51 :QRQ T0547 113 :KAELLLAMAYNNEGAPITVNGFKDRELINIGF 1w8gA 63 :VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVA T0547 146 :AA 1w8gA 95 :EH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRL 1w8gA 119 :ELPPLNVLIQINI T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 1w8gA 132 :SDENSKSGIQLAELDELAAAVAELP T0547 224 :LEQFTMIHF 1w8gA 157 :RLRLRGLMA T0547 238 :ITEIHPLKKALNEAGNIYTELRKM 1w8gA 170 :ESEYVRQFEVARQMAVAFAGLKTR T0547 263 :AKNLKAINLG 1w8gA 194 :YPHIDTLSLG T0547 288 :RNYTLREYAND 1w8gA 204 :MSDDMEAAIAA T0547 314 :EPDIF 1w8gA 215 :GSTMV Number of specific fragments extracted= 14 number of extra gaps= 0 total=9967 Will force an alignment to be made, even if fragment is small Number of alignments=447 # 1w8gA read from all-align.a2m # found chain 1w8gA in template set T0547 55 :IQKQIENIYGNFNKARKEFGYKGGFNAVYPL 1w8gA 4 :IAHNLAQVRDKISAAATRCGRSPEEITLLAV T0547 86 :KVNQY 1w8gA 36 :KTKPA T0547 92 :GFVKNLVKLGK 1w8gA 41 :SAIAEAIDAGQ T0547 106 :YGLEAGSKAEL 1w8gA 52 :RQFGENYVQEG T0547 117 :LLAMAYNNEGAPITVNGFKDRELINIGFIA 1w8gA 67 :RHFQELGVTGLEWHFIGPLQSNKSRLVAEH T0547 151 :HNITLTIEGLNELEAIIDIAKE 1w8gA 97 :FDWCHTIDRLRIATRLNDQRPA T0547 174 :FKPKPNIGLRVRL 1w8gA 119 :ELPPLNVLIQINI T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 1w8gA 132 :SDENSKSGIQLAELDELAAAVAELP T0547 224 :LEQFTMIHF 1w8gA 157 :RLRLRGLMA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKM 1w8gA 168 :APESEYVRQFEVARQMAVAFAGLKTR T0547 263 :AKNLKAINLG 1w8gA 194 :YPHIDTLSLG T0547 284 :NEKSR 1w8gA 204 :MSDDM T0547 305 :NIAEQKKDLEPDI 1w8gA 209 :EAAIAAGSTMVRI Number of specific fragments extracted= 13 number of extra gaps= 0 total=9980 Will force an alignment to be made, even if fragment is small Number of alignments=448 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNFN 1xfcA 12 :AEAMVDLGAIEHNVRVLREHAG T0547 78 :GFNAVYPLKVN 1xfcA 34 :HAQLMAVVKAD T0547 89 :QYPGFVKNLVKLG 1xfcA 49 :GATRVAQTALGAG T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1xfcA 64 :ELGVATVDEALALRADGITAPVLAWLHPPGI T0547 141 :NIGFIAAE 1xfcA 95 :DFGPALLA T0547 152 :NITLTIEGLNELEAIIDIAKER 1xfcA 103 :DVQVAVSSLRQLDELLHAVRRT T0547 175 :KPKPNIGLRVR 1xfcA 125 :GRTATVTVKVD T0547 197 :S 1xfcA 136 :T T0547 203 :KFGLTSTELIEAVNLLKEN 1xfcA 140 :RNGVGPAQFPAMLTALRQA T0547 222 :KLL 1xfcA 162 :DAV T0547 226 :QFTMIHFH 1xfcA 165 :RLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEYSQ 1xfcA 204 :RFEVAHLSNSSATMARP T0547 284 :NE 1xfcA 221 :DL T0547 289 :NYTLREYANDVVFILK 1xfcA 223 :TFDLVRPGIAVYGLSP T0547 505 :EKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEG 1xfcA 271 :YGHTWIAPRDTNLALLPIGYADGVFRSLGGRLEVLINGRRCPGVG T0547 550 :IIEAQSIL 1xfcA 317 :ICMDQFMV T0547 559 :TLEDL 1xfcA 325 :DLGPG T0547 564 :DYDIHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQDWADLVGTIHYEVVTSPRGRITRTYR Number of specific fragments extracted= 19 number of extra gaps= 1 total=9999 Will force an alignment to be made, even if fragment is small Number of alignments=449 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 59 :IENIYGNFNKARKEFG 1xfcA 18 :LGAIEHNVRVLREHAG T0547 78 :GFNAVYPLKVN 1xfcA 34 :HAQLMAVVKAD T0547 89 :QYPGFVKNLVKLG 1xfcA 49 :GATRVAQTALGAG T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDR 1xfcA 64 :ELGVATVDEALALRADGITAPVLAWLHPPGI T0547 141 :NIGFIAAE 1xfcA 95 :DFGPALLA T0547 152 :NITLTIEGLNELEAIIDIAKER 1xfcA 103 :DVQVAVSSLRQLDELLHAVRRT T0547 175 :KPKPNIGLRVR 1xfcA 125 :GRTATVTVKVD T0547 197 :S 1xfcA 136 :T T0547 203 :KFGLTSTELIEAVNLLKEN 1xfcA 140 :RNGVGPAQFPAMLTALRQA T0547 222 :KLL 1xfcA 162 :DAV T0547 226 :QFTMIHFH 1xfcA 165 :RLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEYSQ 1xfcA 204 :RFEVAHLSNSSATMARP T0547 284 :NE 1xfcA 221 :DL T0547 289 :NYTLREYANDVVFILKNI 1xfcA 223 :TFDLVRPGIAVYGLSPVP T0547 313 :LEPDIFIESGRFVAA 1xfcA 241 :ALGDMGLVPAMTVKC T0547 330 :AVLIAPVLELFSQ 1xfcA 256 :AVALVKSIRAGEG T0547 436 :VQERYLVNFSLFQSMPDF 1xfcA 271 :YGHTWIAPRDTNLALLPI T0547 455 :GLEQNFPIMPLDRLD 1xfcA 289 :GYADGVFRSLGGRLE T0547 470 :EEPTR 1xfcA 305 :LINGR T0547 482 :TCDSDGEISYSKD 1xfcA 310 :RCPGVGRICMDQF T0547 498 :FLHDVDVE 1xfcA 323 :MVDLGPGP T0547 506 :KENYFLGFFLVGAYQEVLGMKHNLFTHPTEAII 1xfcA 334 :AEGDEAILFGPGIRGEPTAQDWADLVGTIHYEV Number of specific fragments extracted= 23 number of extra gaps= 1 total=10022 Will force an alignment to be made, even if fragment is small Number of alignments=450 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 52 :P 1xfcA 12 :A T0547 54 :LIQKQIENIYGNFNKARKEFG 1xfcA 13 :EAMVDLGAIEHNVRVLREHAG T0547 78 :GFNAVYPLKVNQ 1xfcA 34 :HAQLMAVVKADG T0547 90 :YPGFVKNLVKLG 1xfcA 50 :ATRVAQTALGAG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWLHPPGID T0547 141 :NIGFIAA 1xfcA 96 :FGPALLA T0547 152 :NITLTIEGLNELEAIIDIAKER 1xfcA 103 :DVQVAVSSLRQLDELLHAVRRT T0547 175 :KPKPNIGLRVR 1xfcA 125 :GRTATVTVKVD T0547 197 :S 1xfcA 136 :T T0547 203 :KFGLTSTELIEAVNLLKEN 1xfcA 140 :RNGVGPAQFPAMLTALRQA T0547 222 :KLL 1xfcA 162 :DAV T0547 226 :QFTMIHFH 1xfcA 165 :RLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEYS 1xfcA 204 :RFEVAHLSNSSATMAR T0547 287 :SRNYTLREYANDV 1xfcA 221 :DLTFDLVRPGIAV T0547 313 :LEPDIFIESGRF 1xfcA 234 :YGLSPVPALGDM T0547 541 :NEKGYEVEG 1xfcA 307 :NGRRCPGVG T0547 550 :IIEAQSILDTL 1xfcA 317 :ICMDQFMVDLG T0547 562 :DL 1xfcA 328 :PG T0547 564 :DYDIHAIMDILNERISNSKLVNDKQ 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQDWA T0547 589 :KKHILGELYLFLNDNGYLKSIGV 1xfcA 359 :VGTIHYEVVTSPRGRITRTYREA Number of specific fragments extracted= 21 number of extra gaps= 1 total=10043 Will force an alignment to be made, even if fragment is small Number of alignments=451 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)G199 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 59 :IENIYGNFNKARKEFG 1xfcA 18 :LGAIEHNVRVLREHAG T0547 78 :GFNAVYPLKVNQ 1xfcA 34 :HAQLMAVVKADG T0547 90 :YPGFVKNLVKLG 1xfcA 50 :ATRVAQTALGAG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWLHPPGID T0547 141 :NIGFIAA 1xfcA 96 :FGPALLA T0547 152 :NITLTIEGLNELEAIIDIAKER 1xfcA 103 :DVQVAVSSLRQLDELLHAVRRT T0547 175 :KPKPNIGLRVR 1xfcA 125 :GRTATVTVKVD T0547 197 :S 1xfcA 136 :T T0547 203 :KFGLTSTELIEAVNLLKEN 1xfcA 140 :RNGVGPAQFPAMLTALRQA T0547 222 :KLL 1xfcA 162 :DAV T0547 226 :QFTMIHFH 1xfcA 165 :RLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEYS 1xfcA 204 :RFEVAHLSNSSATMAR T0547 287 :SRNYTLREYANDV 1xfcA 221 :DLTFDLVRPGIAV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 1xfcA 234 :YGLSPVPALGDMGLVPAMTVKCAVALVKSIR T0547 344 :YAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSID 1xfcA 271 :YGHTWIAPRDTNLALLPIGYADGVFRSLGGRLEVLINGRR T0547 384 :HLESILTLFDLGYVDLQDRS 1xfcA 334 :AEGDEAILFGPGIRGEPTAQ Number of specific fragments extracted= 17 number of extra gaps= 1 total=10060 Will force an alignment to be made, even if fragment is small Number of alignments=452 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)F232 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)I238 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 2 :MDYGIDI 1xfcA 12 :AEAMVDL T0547 13 :NFIIKNGKVCINYEKK 1xfcA 19 :GAIEHNVRVLREHAGH T0547 32 :IDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEF 1xfcA 35 :AQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALAL T0547 75 :YKGGFNA 1xfcA 77 :RADGITA T0547 84 :PLKVNQYPGFVKNLV 1xfcA 86 :LAWLHPPGIDFGPAL T0547 150 :GHNITLTIEGLNELEAIIDIAKER 1xfcA 101 :LADVQVAVSSLRQLDELLHAVRRT T0547 175 :KPKPNIGLRVRL 1xfcA 125 :GRTATVTVKVDT T0547 203 :KFGLTSTELIEAVNLLKEN 1xfcA 140 :RNGVGPAQFPAMLTALRQA T0547 222 :KLLEQFTMIH 1xfcA 163 :AVRLRGLMSH T0547 239 :TEIHPLKKALNEA 1xfcA 180 :DDSINDVQAQRFT T0547 358 :LIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAE 1xfcA 252 :TVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGG T0547 535 :EAIISINEKGYEVEGIIEAQSILDTLEDL 1xfcA 301 :RLEVLINGRRCPGVGRICMDQFMVDLGPG T0547 564 :DYDIHAIMDILNERISNSKLVND 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQD T0547 587 :KQKKHILGELYLFLNDNGYLKSIGV 1xfcA 357 :DLVGTIHYEVVTSPRGRITRTYREA Number of specific fragments extracted= 14 number of extra gaps= 1 total=10074 Will force an alignment to be made, even if fragment is small Number of alignments=453 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)F232 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 T0547 106 :YGLEAGSKAEL 1xfcA 46 :YGHGATRVAQT T0547 117 :LLAMAYNNEGAPITVNGFKDRELINIGFIAA 1xfcA 64 :ELGVATVDEALALRADGITAPVLAWLHPPGI T0547 148 :EMGHNITLTIEGLNELEAIIDIAKER 1xfcA 99 :ALLADVQVAVSSLRQLDELLHAVRRT T0547 175 :KPKPNIGLRVRL 1xfcA 125 :GRTATVTVKVDT T0547 203 :KFGLTSTELIEAVNLLKENKLLE 1xfcA 140 :RNGVGPAQFPAMLTALRQAMAED T0547 226 :QFTMIH 1xfcA 167 :RGLMSH Number of specific fragments extracted= 6 number of extra gaps= 1 total=10080 Will force an alignment to be made, even if fragment is small Number of alignments=454 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)P29 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 Warning: unaligning (T0547)S608 because last residue in template chain is (1xfcA)A381 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKV 1xfcA 33 :GHAQLMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1xfcA 48 :HGATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFK 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWLHPP T0547 139 :LINIGF 1xfcA 93 :GIDFGP T0547 146 :AAEMGHN 1xfcA 99 :ALLADVQ T0547 155 :LTIEGLNELEAIIDIAKE 1xfcA 106 :VAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTE 1xfcA 140 :RNGVGPAQ T0547 211 :LIEAVNLLKENKLL 1xfcA 151 :MLTALRQAMAEDAV T0547 226 :QFTMIHFH 1xfcA 165 :RLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :N 1xfcA 204 :R T0547 275 :LAVEY 1xfcA 205 :FEVAH T0547 282 :FKNEKSRNYTLREYANDVVFILKNI 1xfcA 210 :LSNSSATMARPDLTFDLVRPGIAVY T0547 311 :KDLEPDI 1xfcA 235 :GLSPVPA T0547 321 :SGRFVAANHAVLIAPVLELFSQ 1xfcA 242 :LGDMGLVPAMTVKCAVALVKSI T0547 344 :YAENKLIL 1xfcA 271 :YGHTWIAP T0547 353 :KQ 1xfcA 279 :RD T0547 365 :LYKSIKPSNALE 1xfcA 281 :TNLALLPIGYAD T0547 377 :YLHDSIDHLESILTLFDLGYVD 1xfcA 299 :GGRLEVLINGRRCPGVGRICMD T0547 399 :LQ 1xfcA 326 :LG T0547 401 :DRSNAEILTHLITK 1xfcA 332 :DVAEGDEAILFGPG T0547 441 :LVNFSLFQSMPDFWGLEQNFPIM 1xfcA 346 :IRGEPTAQDWADLVGTIHYEVVT T0547 596 :LYLFLNDNGYLK 1xfcA 369 :SPRGRITRTYRE Number of specific fragments extracted= 25 number of extra gaps= 2 total=10105 Will force an alignment to be made, even if fragment is small Number of alignments=455 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 Warning: unaligning (T0547)S608 because last residue in template chain is (1xfcA)A381 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVNQY 1xfcA 33 :GHAQLMAVVKADGY T0547 91 :PGFVKNLVKLGK 1xfcA 51 :TRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1xfcA 63 :AELGVATVDEALALRADGIT T0547 127 :APITVNGFKDRE 1xfcA 83 :APVLAWLHPPGI T0547 143 :GF 1xfcA 97 :GP T0547 146 :AAEMGH 1xfcA 99 :ALLADV T0547 153 :I 1xfcA 105 :Q T0547 155 :LTIEGLNELEAIIDIAKE 1xfcA 106 :VAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTELIEAVNLLKE 1xfcA 140 :RNGVGPAQFPAMLTALRQ T0547 221 :NKLL 1xfcA 161 :EDAV T0547 226 :QFTMIHFH 1xfcA 165 :RLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 282 :FKNEKSRNYTL 1xfcA 219 :RPDLTFDLVRP T0547 306 :IAEQKKD 1xfcA 230 :GIAVYGL T0547 313 :LEPDIFIESGRFVAA 1xfcA 241 :ALGDMGLVPAMTVKC T0547 330 :AVLIAPVLELFSQEYAENKLILKKQNPKLIDE 1xfcA 256 :AVALVKSIRAGEGVSYGHTWIAPRDTNLALLP T0547 362 :LYDLYKSIKPSNALEYLHD 1xfcA 289 :GYADGVFRSLGGRLEVLIN T0547 381 :SIDHLESILTLFDLGYVD 1xfcA 310 :RCPGVGRICMDQFMVDLG T0547 399 :LQ 1xfcA 329 :GP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPAD 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQDWADLV T0547 449 :SMPDFWGLEQNFPIMP 1xfcA 360 :GTIHYEVVTSPRGRIT T0547 537 :II 1xfcA 376 :RT T0547 605 :YLK 1xfcA 378 :YRE Number of specific fragments extracted= 26 number of extra gaps= 2 total=10131 Will force an alignment to be made, even if fragment is small Number of alignments=456 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 Warning: unaligning (T0547)S608 because last residue in template chain is (1xfcA)A381 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVNQY 1xfcA 33 :GHAQLMAVVKADGY T0547 91 :PGFVKNLVKLGK 1xfcA 51 :TRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1xfcA 63 :AELGVATVDEALALRADGITA T0547 128 :PITVNGFKDR 1xfcA 84 :PVLAWLHPPG T0547 140 :INIGF 1xfcA 94 :IDFGP T0547 146 :AAEMG 1xfcA 99 :ALLAD T0547 153 :ITLTIEGLNELEAIIDIAKE 1xfcA 104 :VQVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTELIEAVNLLKEN 1xfcA 140 :RNGVGPAQFPAMLTALRQA T0547 222 :KLLE 1xfcA 162 :DAVR T0547 227 :FTMIHFH 1xfcA 166 :LRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 291 :TLREYANDV 1xfcA 219 :RPDLTFDLV T0547 302 :ILKNIAEQK 1xfcA 232 :AVYGLSPVP T0547 313 :LEPDIFIESGRFVAA 1xfcA 241 :ALGDMGLVPAMTVKC T0547 330 :AVLIAPVLELFSQ 1xfcA 256 :AVALVKSIRAGEG T0547 346 :ENKLILKKQNPKLIDE 1xfcA 272 :GHTWIAPRDTNLALLP T0547 362 :LYDLYKSIKPSNALEYLHD 1xfcA 289 :GYADGVFRSLGGRLEVLIN T0547 381 :SIDHLESILTLFDLGYVD 1xfcA 310 :RCPGVGRICMDQFMVDLG T0547 399 :LQ 1xfcA 329 :GP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPA 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQDWADL T0547 553 :AQSILDTLEDLDYDI 1xfcA 360 :GTIHYEVVTSPRGRI T0547 602 :DNGYLK 1xfcA 375 :TRTYRE Number of specific fragments extracted= 25 number of extra gaps= 2 total=10156 Will force an alignment to be made, even if fragment is small Number of alignments=457 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 Warning: unaligning (T0547)E542 because last residue in template chain is (1xfcA)A381 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVN 1xfcA 33 :GHAQLMAVVKAD T0547 89 :QYPGFVKNLVKLGK 1xfcA 49 :GATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1xfcA 63 :AELGVATVDEALALRADGITA T0547 128 :PITVNGFKDRE 1xfcA 84 :PVLAWLHPPGI T0547 141 :NIGF 1xfcA 95 :DFGP T0547 146 :AAEMGH 1xfcA 99 :ALLADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTELIEAVNLLKE 1xfcA 140 :RNGVGPAQFPAMLTALRQ T0547 221 :NKLL 1xfcA 161 :EDAV T0547 226 :QFTMIHFH 1xfcA 165 :RLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 282 :FKNE 1xfcA 219 :RPDL T0547 286 :KSR 1xfcA 226 :LVR T0547 291 :TLR 1xfcA 229 :PGI T0547 308 :EQKKD 1xfcA 232 :AVYGL T0547 313 :LEPDIFIESGRFVAA 1xfcA 241 :ALGDMGLVPAMTVKC T0547 330 :AVLIAPVLELFSQEYAENKLILKKQNPKLIDE 1xfcA 256 :AVALVKSIRAGEGVSYGHTWIAPRDTNLALLP T0547 362 :LYDLYKSIKPSNALEYLHD 1xfcA 289 :GYADGVFRSLGGRLEVLIN T0547 381 :SIDHLESILTLFDLGYVD 1xfcA 310 :RCPGVGRICMDQFMVDLG T0547 399 :LQ 1xfcA 329 :GP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQDWA T0547 426 :PADLLAIQDEVQER 1xfcA 360 :GTIHYEVVTSPRGR T0547 535 :EAIISIN 1xfcA 374 :ITRTYRE Number of specific fragments extracted= 26 number of extra gaps= 2 total=10182 Will force an alignment to be made, even if fragment is small Number of alignments=458 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 Warning: unaligning (T0547)S608 because last residue in template chain is (1xfcA)A381 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVN 1xfcA 33 :GHAQLMAVVKAD T0547 89 :QYPGFVKNLVKLGK 1xfcA 49 :GATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1xfcA 63 :AELGVATVDEALALRADGITA T0547 128 :PITVNGFKDRE 1xfcA 84 :PVLAWLHPPGI T0547 141 :NIGF 1xfcA 95 :DFGP T0547 146 :AAEMGH 1xfcA 99 :ALLADV T0547 153 :I 1xfcA 105 :Q T0547 155 :LTIEGLNELEAIIDIAKE 1xfcA 106 :VAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTELIEAVNLLKE 1xfcA 140 :RNGVGPAQFPAMLTALRQ T0547 221 :NKLL 1xfcA 161 :EDAV T0547 226 :QFTMIHFH 1xfcA 165 :RLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 282 :FKNEKSR 1xfcA 219 :RPDLTFD T0547 318 :FIESGRFVAA 1xfcA 226 :LVRPGIAVYG T0547 328 :NHAVLIAPVLELFSQ 1xfcA 249 :PAMTVKCAVALVKSI T0547 343 :EYAENKLILKKQNPKLIDE 1xfcA 278 :PRDTNLALLPIGYADGVFR T0547 362 :LYD 1xfcA 298 :LGG T0547 376 :EYL 1xfcA 301 :RLE T0547 379 :HDSIDHLESILTLFDLGYVD 1xfcA 308 :GRRCPGVGRICMDQFMVDLG T0547 399 :LQ 1xfcA 329 :GP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQDWA T0547 426 :PADLLAIQ 1xfcA 360 :GTIHYEVV T0547 454 :WGLEQNFP 1xfcA 368 :TSPRGRIT T0547 603 :NGYLK 1xfcA 376 :RTYRE Number of specific fragments extracted= 27 number of extra gaps= 2 total=10209 Will force an alignment to be made, even if fragment is small Number of alignments=459 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 Warning: unaligning (T0547)S608 because last residue in template chain is (1xfcA)A381 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVN 1xfcA 33 :GHAQLMAVVKAD T0547 89 :QYPGFVKNLVKLGK 1xfcA 49 :GATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1xfcA 63 :AELGVATVDEALALRADGITAP T0547 129 :ITVNGFKDRE 1xfcA 85 :VLAWLHPPGI T0547 141 :NIGF 1xfcA 95 :DFGP T0547 146 :AAEMGH 1xfcA 99 :ALLADV T0547 153 :I 1xfcA 105 :Q T0547 155 :LTIEGLNELEAIIDIAKE 1xfcA 106 :VAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTST 1xfcA 140 :RNGVGPA T0547 210 :ELIEAVNLLKENKLL 1xfcA 150 :AMLTALRQAMAEDAV T0547 226 :QFTMIHFH 1xfcA 165 :RLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 282 :FKNE 1xfcA 219 :RPDL T0547 286 :KS 1xfcA 228 :RP T0547 291 :TL 1xfcA 230 :GI T0547 308 :EQKKDLE 1xfcA 232 :AVYGLSP T0547 315 :PDIFIESGRFVAA 1xfcA 243 :GDMGLVPAMTVKC T0547 330 :AVLIAPVLELFSQ 1xfcA 256 :AVALVKSIRAGEG T0547 343 :EYAENKLILKKQNPK 1xfcA 278 :PRDTNLALLPIGYAD T0547 377 :YLHDSIDHLESILTLFDLGYVD 1xfcA 306 :INGRRCPGVGRICMDQFMVDLG T0547 399 :LQ 1xfcA 329 :GP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPAD 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQDWADLV T0547 429 :LLAIQDEV 1xfcA 362 :IHYEVVTS T0547 472 :PTRSAS 1xfcA 370 :PRGRIT T0547 603 :NGYLK 1xfcA 376 :RTYRE Number of specific fragments extracted= 28 number of extra gaps= 2 total=10237 Will force an alignment to be made, even if fragment is small Number of alignments=460 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 50 :RFPHLIQKQIENIYGNF 1xfcA 16 :VDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKV 1xfcA 33 :GHAQLMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1xfcA 48 :HGATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFK 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWLHPP T0547 139 :LINIGF 1xfcA 93 :GIDFGP T0547 146 :AAEMGHN 1xfcA 99 :ALLADVQ T0547 155 :LTIEGLNELEAIIDIAKE 1xfcA 106 :VAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTE 1xfcA 140 :RNGVGPAQ T0547 211 :LIEAVNLLKENKLL 1xfcA 151 :MLTALRQAMAEDAV T0547 226 :QFTMIHFH 1xfcA 165 :RLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :N 1xfcA 204 :R T0547 275 :LAVEY 1xfcA 205 :FEVAH T0547 282 :FKNEKSRNYTLREYANDVVFILKNI 1xfcA 210 :LSNSSATMARPDLTFDLVRPGIAVY T0547 311 :KDLEPDI 1xfcA 235 :GLSPVPA T0547 321 :SGRFVAANHAVLIAPVLELFSQ 1xfcA 242 :LGDMGLVPAMTVKCAVALVKSI T0547 344 :YAENKLIL 1xfcA 271 :YGHTWIAP T0547 353 :KQNP 1xfcA 279 :RDTN T0547 367 :KSIKPSNALE 1xfcA 283 :LALLPIGYAD T0547 377 :YLHDSIDHLESILTLFDLGYVD 1xfcA 299 :GGRLEVLINGRRCPGVGRICMD T0547 399 :LQ 1xfcA 326 :LG T0547 401 :DRSNAEILTHL 1xfcA 332 :DVAEGDEAILF Number of specific fragments extracted= 23 number of extra gaps= 2 total=10260 Will force an alignment to be made, even if fragment is small Number of alignments=461 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 Warning: unaligning (T0547)E470 because last residue in template chain is (1xfcA)A381 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVNQY 1xfcA 33 :GHAQLMAVVKADGY T0547 91 :PGFVKNLVKLGK 1xfcA 51 :TRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1xfcA 63 :AELGVATVDEALALRADGIT T0547 127 :APITVNGFKDRE 1xfcA 83 :APVLAWLHPPGI T0547 143 :GF 1xfcA 97 :GP T0547 146 :AAEMGH 1xfcA 99 :ALLADV T0547 153 :I 1xfcA 105 :Q T0547 155 :LTIEGLNELEAIIDIAKE 1xfcA 106 :VAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTELIEAVNLLKE 1xfcA 140 :RNGVGPAQFPAMLTALRQ T0547 221 :NKLL 1xfcA 161 :EDAV T0547 226 :QFTMIHFH 1xfcA 165 :RLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 282 :FKNEKSRNYTL 1xfcA 219 :RPDLTFDLVRP T0547 306 :IAEQKKD 1xfcA 230 :GIAVYGL T0547 313 :LEPDIFIESGRFVAA 1xfcA 241 :ALGDMGLVPAMTVKC T0547 330 :AVLIAPVLELFSQEYAENKLILKKQNPKLIDE 1xfcA 256 :AVALVKSIRAGEGVSYGHTWIAPRDTNLALLP T0547 362 :LYDLYKSIKPSNALEYLHD 1xfcA 289 :GYADGVFRSLGGRLEVLIN T0547 381 :SIDHLESILTLFDLGYVD 1xfcA 310 :RCPGVGRICMDQFMVDLG T0547 399 :LQ 1xfcA 329 :GP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPAD 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQDWADLV T0547 449 :SMPDFWGLEQNFPIMPLDRLD 1xfcA 360 :GTIHYEVVTSPRGRITRTYRE Number of specific fragments extracted= 24 number of extra gaps= 2 total=10284 Will force an alignment to be made, even if fragment is small Number of alignments=462 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVNQY 1xfcA 33 :GHAQLMAVVKADGY T0547 91 :PGFVKNLVKLGK 1xfcA 51 :TRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1xfcA 63 :AELGVATVDEALALRADGITA T0547 128 :PITVNGFKDR 1xfcA 84 :PVLAWLHPPG T0547 140 :INIGF 1xfcA 94 :IDFGP T0547 146 :AAEMG 1xfcA 99 :ALLAD T0547 153 :ITLTIEGLNELEAIIDIAKE 1xfcA 104 :VQVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTELIEAVNLLKEN 1xfcA 140 :RNGVGPAQFPAMLTALRQA T0547 222 :KLLE 1xfcA 162 :DAVR T0547 227 :FTMIHFH 1xfcA 166 :LRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 291 :TLREYANDV 1xfcA 219 :RPDLTFDLV T0547 302 :ILKNIAEQK 1xfcA 232 :AVYGLSPVP T0547 313 :LEPDIFIESGRFVAA 1xfcA 241 :ALGDMGLVPAMTVKC T0547 330 :AVLIAPVLELFSQ 1xfcA 256 :AVALVKSIRAGEG T0547 346 :ENKLILKKQNPKLIDE 1xfcA 272 :GHTWIAPRDTNLALLP T0547 362 :LYDLYKSIKPSNALEYLHD 1xfcA 289 :GYADGVFRSLGGRLEVLIN T0547 381 :SIDHLESILTLFDLGYVD 1xfcA 310 :RCPGVGRICMDQFMVDLG T0547 399 :LQ 1xfcA 329 :GP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPA 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQDWADL T0547 428 :D 1xfcA 360 :G Number of specific fragments extracted= 24 number of extra gaps= 2 total=10308 Will force an alignment to be made, even if fragment is small Number of alignments=463 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 Warning: unaligning (T0547)E542 because last residue in template chain is (1xfcA)A381 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVN 1xfcA 33 :GHAQLMAVVKAD T0547 89 :QYPGFVKNLVKLGK 1xfcA 49 :GATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1xfcA 63 :AELGVATVDEALALRADGITA T0547 128 :PITVNGFKDRE 1xfcA 84 :PVLAWLHPPGI T0547 141 :NIGF 1xfcA 95 :DFGP T0547 146 :AAEMGH 1xfcA 99 :ALLADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTELIEAVNLLKE 1xfcA 140 :RNGVGPAQFPAMLTALRQ T0547 221 :NKLL 1xfcA 161 :EDAV T0547 226 :QFTMIHFH 1xfcA 165 :RLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 282 :FKNE 1xfcA 219 :RPDL T0547 286 :KSR 1xfcA 226 :LVR T0547 291 :TLR 1xfcA 229 :PGI T0547 308 :EQKKD 1xfcA 232 :AVYGL T0547 313 :LEPDIFIESGRFVAA 1xfcA 241 :ALGDMGLVPAMTVKC T0547 330 :AVLIAPVLELFSQEYAENKLILKKQNPKLIDE 1xfcA 256 :AVALVKSIRAGEGVSYGHTWIAPRDTNLALLP T0547 362 :LYDLYKSIKPSNALEYLHD 1xfcA 289 :GYADGVFRSLGGRLEVLIN T0547 381 :SIDHLESILTLFDLGYVD 1xfcA 310 :RCPGVGRICMDQFMVDLG T0547 399 :LQ 1xfcA 329 :GP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQDWA T0547 426 :PADLLAIQDEVQERY 1xfcA 360 :GTIHYEVVTSPRGRI T0547 536 :AIISIN 1xfcA 375 :TRTYRE Number of specific fragments extracted= 26 number of extra gaps= 2 total=10334 Will force an alignment to be made, even if fragment is small Number of alignments=464 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVN 1xfcA 33 :GHAQLMAVVKAD T0547 89 :QYPGFVKNLVKLGK 1xfcA 49 :GATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 1xfcA 63 :AELGVATVDEALALRADGITA T0547 128 :PITVNGFKDRE 1xfcA 84 :PVLAWLHPPGI T0547 141 :NIGF 1xfcA 95 :DFGP T0547 146 :AAEMGH 1xfcA 99 :ALLADV T0547 153 :I 1xfcA 105 :Q T0547 155 :LTIEGLNELEAIIDIAKE 1xfcA 106 :VAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTELIEAVNLLKE 1xfcA 140 :RNGVGPAQFPAMLTALRQ T0547 221 :NKLL 1xfcA 161 :EDAV T0547 226 :QFTMIHFH 1xfcA 165 :RLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 282 :FKNEKSR 1xfcA 219 :RPDLTFD T0547 318 :FIESGRFVAA 1xfcA 226 :LVRPGIAVYG T0547 328 :NHAVLIAPVLELFSQ 1xfcA 249 :PAMTVKCAVALVKSI T0547 343 :EYAENKLILKKQNPKLIDE 1xfcA 278 :PRDTNLALLPIGYADGVFR T0547 362 :LYD 1xfcA 298 :LGG T0547 376 :EYL 1xfcA 301 :RLE T0547 379 :HDSIDHLESILTLFDLGYVD 1xfcA 308 :GRRCPGVGRICMDQFMVDLG T0547 399 :LQ 1xfcA 329 :GP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQDWA T0547 426 :PADLLA 1xfcA 360 :GTIHYE Number of specific fragments extracted= 25 number of extra gaps= 2 total=10359 Will force an alignment to be made, even if fragment is small Number of alignments=465 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVN 1xfcA 33 :GHAQLMAVVKAD T0547 89 :QYPGFVKNLVKLGK 1xfcA 49 :GATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1xfcA 63 :AELGVATVDEALALRADGITAP T0547 129 :ITVNGFKDRE 1xfcA 85 :VLAWLHPPGI T0547 141 :NIGF 1xfcA 95 :DFGP T0547 146 :AAEMGH 1xfcA 99 :ALLADV T0547 153 :I 1xfcA 105 :Q T0547 155 :LTIEGLNELEAIIDIAKE 1xfcA 106 :VAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTST 1xfcA 140 :RNGVGPA T0547 210 :ELIEAVNLLKENKLL 1xfcA 150 :AMLTALRQAMAEDAV T0547 226 :QFTMIHFH 1xfcA 165 :RLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 282 :FKNE 1xfcA 219 :RPDL T0547 286 :KS 1xfcA 228 :RP T0547 291 :TL 1xfcA 230 :GI T0547 308 :EQKKDLE 1xfcA 232 :AVYGLSP T0547 315 :PDIFIESGRFVAA 1xfcA 243 :GDMGLVPAMTVKC T0547 330 :AVLIAPVLELFSQ 1xfcA 256 :AVALVKSIRAGEG T0547 343 :EYAENKLILKKQNPK 1xfcA 278 :PRDTNLALLPIGYAD T0547 377 :YLHDSIDHLESILTLFDLGYVD 1xfcA 306 :INGRRCPGVGRICMDQFMVDLG T0547 399 :LQ 1xfcA 329 :GP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPAD 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQDWADLV T0547 429 :LLAIQD 1xfcA 362 :IHYEVV Number of specific fragments extracted= 26 number of extra gaps= 2 total=10385 Will force an alignment to be made, even if fragment is small Number of alignments=466 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)L49 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 Warning: unaligning (T0547)F447 because last residue in template chain is (1xfcA)A381 T0547 50 :RFPHLIQKQIENIYGNF 1xfcA 16 :VDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVNQYPG 1xfcA 33 :GHAQLMAVVKADGYGH T0547 93 :FVKNLVKLGK 1xfcA 53 :VAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 1xfcA 63 :AELGVATVDEALALRADGITAPVLAW T0547 132 :NGF 1xfcA 90 :HPP T0547 135 :KDRELI 1xfcA 94 :IDFGPA T0547 149 :MGHNITLTIEGLNELEAIIDIAKE 1xfcA 100 :LLADVQVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRV 1xfcA 124 :TGRTATVTVKV T0547 187 :HS 1xfcA 135 :DT T0547 203 :KFGLTSTE 1xfcA 140 :RNGVGPAQ T0547 211 :LIEAVNLLKENKLLEQFT 1xfcA 151 :MLTALRQAMAEDAVRLRG T0547 230 :IHFH 1xfcA 169 :LMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLG 1xfcA 204 :RFEVAHLS T0547 282 :FKNEKSR 1xfcA 212 :NSSATMA T0547 291 :TLREYANDVVFILKNI 1xfcA 219 :RPDLTFDLVRPGIAVY T0547 311 :KD 1xfcA 235 :GL T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQE 1xfcA 237 :SPVPALGDMGLVPAMTVKCAVALVKSIR T0547 344 :Y 1xfcA 280 :D T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1xfcA 281 :TNLALLPIGYADGVFRSLGGRLE T0547 377 :YLHDSIDHLE 1xfcA 309 :RRCPGVGRIC T0547 389 :LTLFDLGYVDLQ 1xfcA 319 :MDQFMVDLGPGP T0547 401 :DRSNAEILTHLITKKAILLLGD 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQ T0547 423 :KQNPADLLAIQDEVQERYLVNFSL 1xfcA 357 :DLVGTIHYEVVTSPRGRITRTYRE Number of specific fragments extracted= 24 number of extra gaps= 1 total=10409 Will force an alignment to be made, even if fragment is small Number of alignments=467 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 Warning: unaligning (T0547)I481 because last residue in template chain is (1xfcA)A381 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVNQY 1xfcA 33 :GHAQLMAVVKADGY T0547 91 :PGFVKNLVKLGK 1xfcA 51 :TRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1xfcA 63 :AELGVATVDEALALRADGIT T0547 127 :APITV 1xfcA 83 :APVLA T0547 132 :NGFKDRELINIGF 1xfcA 89 :LHPPGIDFGPALL T0547 151 :HNITLTIEGLNELEAIIDIAKE 1xfcA 102 :ADVQVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVR 1xfcA 124 :TGRTATVTVKVD T0547 188 :S 1xfcA 136 :T T0547 203 :KFGLTSTELIEAVN 1xfcA 140 :RNGVGPAQFPAMLT T0547 217 :LLKENKLLEQFT 1xfcA 157 :QAMAEDAVRLRG T0547 230 :IHFH 1xfcA 169 :LMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 280 :SQFKNE 1xfcA 222 :LTFDLV T0547 291 :TL 1xfcA 228 :RP T0547 306 :IAEQKKD 1xfcA 230 :GIAVYGL T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQE 1xfcA 237 :SPVPALGDMGLVPAMTVKCAVALVKSIR T0547 344 :YAENKLILKK 1xfcA 270 :SYGHTWIAPR T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1xfcA 281 :TNLALLPIGYADGVFRSLGGRLE T0547 377 :YLHDSIDHLESILTLFDLGYVDLQ 1xfcA 309 :RRCPGVGRICMDQFMVDLGPGPLD T0547 402 :RSNAEILTHLITKKAILLLGDKQ 1xfcA 333 :VAEGDEAILFGPGIRGEPTAQDW T0547 425 :NPADLLAIQDEVQERYLVNF 1xfcA 359 :VGTIHYEVVTSPRGRITRTY T0547 479 :WD 1xfcA 379 :RE Number of specific fragments extracted= 24 number of extra gaps= 1 total=10433 Will force an alignment to be made, even if fragment is small Number of alignments=468 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 Warning: unaligning (T0547)S608 because last residue in template chain is (1xfcA)A381 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVNQY 1xfcA 33 :GHAQLMAVVKADGY T0547 91 :PGFVKNLVKLGK 1xfcA 51 :TRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWLHPPGIDFGPALL T0547 151 :HNITLTIEGLNELEAIIDIAKE 1xfcA 102 :ADVQVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTELIEAVNLLKEN 1xfcA 140 :RNGVGPAQFPAMLTALRQA T0547 222 :KLLEQFT 1xfcA 162 :DAVRLRG T0547 230 :IHFH 1xfcA 169 :LMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 291 :TLREYANDV 1xfcA 219 :RPDLTFDLV T0547 300 :VFIL 1xfcA 230 :GIAV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 1xfcA 234 :YGLSPVPALGDMGLVPAMTVKCAVALVKSIR T0547 345 :AENKLILKK 1xfcA 271 :YGHTWIAPR T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1xfcA 281 :TNLALLPIGYADGVFRSLGGRLE T0547 377 :YLHDSIDHLESILTLFDLG 1xfcA 309 :RRCPGVGRICMDQFMVDLG T0547 398 :DLQ 1xfcA 328 :PGP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPAD 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQDWADLV T0547 553 :AQSILDTLEDLDYDIH 1xfcA 360 :GTIHYEVVTSPRGRIT T0547 603 :NGYLK 1xfcA 376 :RTYRE Number of specific fragments extracted= 21 number of extra gaps= 1 total=10454 Will force an alignment to be made, even if fragment is small Number of alignments=469 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 Warning: unaligning (T0547)S608 because last residue in template chain is (1xfcA)A381 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVN 1xfcA 33 :GHAQLMAVVKAD T0547 89 :QYPGFVKNLVKLGK 1xfcA 49 :GATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1xfcA 63 :AELGVATVDEALALRADGIT T0547 127 :APITV 1xfcA 83 :APVLA T0547 132 :NGFKDRELINIGF 1xfcA 89 :LHPPGIDFGPALL T0547 149 :MGH 1xfcA 102 :ADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTELIEAVN 1xfcA 140 :RNGVGPAQFPAMLT T0547 217 :LLKENKLLEQFT 1xfcA 157 :QAMAEDAVRLRG T0547 230 :IHFH 1xfcA 169 :LMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 280 :SQFKNEK 1xfcA 222 :LTFDLVR T0547 291 :TLR 1xfcA 229 :PGI T0547 308 :EQKKD 1xfcA 232 :AVYGL T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQE 1xfcA 237 :SPVPALGDMGLVPAMTVKCAVALVKSIR T0547 345 :AENKLILKK 1xfcA 271 :YGHTWIAPR T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1xfcA 281 :TNLALLPIGYADGVFRSLGGRLE T0547 377 :YLHDSIDHLESILTLFDLGYVDLQ 1xfcA 309 :RRCPGVGRICMDQFMVDLGPGPLD T0547 402 :RSNAEILTHLITKKAILLLGDKQNPAD 1xfcA 333 :VAEGDEAILFGPGIRGEPTAQDWADLV T0547 553 :AQSILDTLEDLD 1xfcA 360 :GTIHYEVVTSPR T0547 604 :GYLK 1xfcA 377 :TYRE Number of specific fragments extracted= 24 number of extra gaps= 2 total=10478 Will force an alignment to be made, even if fragment is small Number of alignments=470 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 Warning: unaligning (T0547)I609 because last residue in template chain is (1xfcA)A381 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKV 1xfcA 33 :GHAQLMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1xfcA 48 :HGATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWLHP T0547 135 :KDRELI 1xfcA 95 :DFGPAL T0547 148 :EMGH 1xfcA 101 :LADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTST 1xfcA 140 :RNGVGPA T0547 210 :ELIEAVNLLKENKLLEQFT 1xfcA 150 :AMLTALRQAMAEDAVRLRG T0547 230 :IHFH 1xfcA 169 :LMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLG 1xfcA 204 :RFEVAHLS T0547 291 :TLREYA 1xfcA 212 :NSSATM T0547 309 :Q 1xfcA 221 :D T0547 313 :LEPDI 1xfcA 222 :LTFDL T0547 319 :IESGRFVAA 1xfcA 227 :VRPGIAVYG T0547 328 :NHAVLIAPVLELFSQE 1xfcA 249 :PAMTVKCAVALVKSIR T0547 344 :YAENKLILKK 1xfcA 279 :RDTNLALLPI T0547 354 :QNPKLIDELY 1xfcA 290 :YADGVFRSLG T0547 373 :NALE 1xfcA 300 :GRLE T0547 377 :YLHDSIDHLESILTLFDLGYVDL 1xfcA 309 :RRCPGVGRICMDQFMVDLGPGPL T0547 401 :DRSNAEILTHLITKKAILLLG 1xfcA 332 :DVAEGDEAILFGPGIRGEPTA T0547 517 :GAYQEVLG 1xfcA 353 :QDWADLVG T0547 554 :QSILDTLEDLD 1xfcA 361 :TIHYEVVTSPR T0547 602 :DN 1xfcA 372 :GR T0547 604 :GYLKS 1xfcA 376 :RTYRE Number of specific fragments extracted= 27 number of extra gaps= 1 total=10505 Will force an alignment to be made, even if fragment is small Number of alignments=471 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 Warning: unaligning (T0547)S608 because last residue in template chain is (1xfcA)A381 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVNQY 1xfcA 33 :GHAQLMAVVKADGY T0547 91 :PGFVKNLVKLGK 1xfcA 51 :TRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWLHPPGIDFGPALL T0547 150 :GHNIT 1xfcA 102 :ADVQV T0547 156 :TIEGLNELEAIIDIAKE 1xfcA 107 :AVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRV 1xfcA 124 :TGRTATVTVKV T0547 187 :HS 1xfcA 135 :DT T0547 203 :KFGLTST 1xfcA 140 :RNGVGPA T0547 210 :ELIEAVNLLKENKLLEQFT 1xfcA 150 :AMLTALRQAMAEDAVRLRG T0547 230 :IHFH 1xfcA 169 :LMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAV 1xfcA 204 :RFEVAHLSNSSAT T0547 278 :EYSQFKN 1xfcA 225 :DLVRPGI T0547 308 :EQKKD 1xfcA 232 :AVYGL T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQE 1xfcA 237 :SPVPALGDMGLVPAMTVKCAVALVKSIR T0547 344 :YAE 1xfcA 280 :DTN T0547 348 :KLILKK 1xfcA 283 :LALLPI T0547 354 :QNPKLIDEL 1xfcA 290 :YADGVFRSL T0547 372 :SNALE 1xfcA 299 :GGRLE T0547 377 :YLHDSIDHLESILTLFDLGYVDLQ 1xfcA 309 :RRCPGVGRICMDQFMVDLGPGPLD T0547 402 :RSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 1xfcA 333 :VAEGDEAILFGPGIRGEPTAQDWADLVGTIHYEVVTS T0547 470 :EEPTRSAS 1xfcA 370 :PRGRITRT T0547 605 :YLK 1xfcA 378 :YRE Number of specific fragments extracted= 24 number of extra gaps= 1 total=10529 Will force an alignment to be made, even if fragment is small Number of alignments=472 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 49 :LRFPHLIQKQIENIYGNF 1xfcA 15 :MVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVNQYPG 1xfcA 33 :GHAQLMAVVKADGYGH T0547 93 :FVKNLVKLGK 1xfcA 53 :VAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 1xfcA 63 :AELGVATVDEALALRADGITAPVLAW T0547 132 :NGF 1xfcA 90 :HPP T0547 135 :KDRELI 1xfcA 94 :IDFGPA T0547 149 :MGHNITLTIEGLNELEAIIDIAKE 1xfcA 100 :LLADVQVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRV 1xfcA 124 :TGRTATVTVKV T0547 187 :HS 1xfcA 135 :DT T0547 203 :KFGLTSTE 1xfcA 140 :RNGVGPAQ T0547 211 :LIEAVNLLKENKLLEQFT 1xfcA 151 :MLTALRQAMAEDAVRLRG T0547 230 :IHFH 1xfcA 169 :LMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLG 1xfcA 204 :RFEVAHLS T0547 282 :FKNEKSR 1xfcA 212 :NSSATMA T0547 291 :TLREYANDVVFILKNI 1xfcA 219 :RPDLTFDLVRPGIAVY T0547 311 :KD 1xfcA 235 :GL T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQE 1xfcA 237 :SPVPALGDMGLVPAMTVKCAVALVKSIR T0547 344 :Y 1xfcA 280 :D T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1xfcA 281 :TNLALLPIGYADGVFRSLGGRLE T0547 377 :YLHDSIDHLE 1xfcA 309 :RRCPGVGRIC T0547 389 :LTLFDLGYVDLQ 1xfcA 319 :MDQFMVDLGPGP T0547 401 :DRSNAEILTHLITKKAILLLG 1xfcA 332 :DVAEGDEAILFGPGIRGEPTA Number of specific fragments extracted= 23 number of extra gaps= 1 total=10552 Will force an alignment to be made, even if fragment is small Number of alignments=473 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVNQY 1xfcA 33 :GHAQLMAVVKADGY T0547 91 :PGFVKNLVKLGK 1xfcA 51 :TRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1xfcA 63 :AELGVATVDEALALRADGIT T0547 127 :APITV 1xfcA 83 :APVLA T0547 132 :NGFKDRELINIGF 1xfcA 89 :LHPPGIDFGPALL T0547 151 :HNITLTIEGLNELEAIIDIAKE 1xfcA 102 :ADVQVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVR 1xfcA 124 :TGRTATVTVKVD T0547 188 :S 1xfcA 136 :T T0547 203 :KFGLTSTELIEAVN 1xfcA 140 :RNGVGPAQFPAMLT T0547 217 :LLKENKLLEQFT 1xfcA 157 :QAMAEDAVRLRG T0547 230 :IHFH 1xfcA 169 :LMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 280 :SQFKNE 1xfcA 222 :LTFDLV T0547 291 :TL 1xfcA 228 :RP T0547 306 :IAEQKKD 1xfcA 230 :GIAVYGL T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQE 1xfcA 237 :SPVPALGDMGLVPAMTVKCAVALVKSIR T0547 344 :YAENKLILKK 1xfcA 270 :SYGHTWIAPR T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1xfcA 281 :TNLALLPIGYADGVFRSLGGRLE T0547 377 :YLHDSIDHLESILTLFDLGYVDLQ 1xfcA 309 :RRCPGVGRICMDQFMVDLGPGPLD T0547 402 :RSNAEILTHLITKKAILLLGDKQ 1xfcA 333 :VAEGDEAILFGPGIRGEPTAQDW T0547 425 :NPADLLAIQDEVQERYLVNF 1xfcA 359 :VGTIHYEVVTSPRGRITRTY T0547 479 :W 1xfcA 379 :R Number of specific fragments extracted= 24 number of extra gaps= 1 total=10576 Will force an alignment to be made, even if fragment is small Number of alignments=474 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVNQY 1xfcA 33 :GHAQLMAVVKADGY T0547 91 :PGFVKNLVKLGK 1xfcA 51 :TRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWLHPPGIDFGPALL T0547 151 :HNITLTIEGLNELEAIIDIAKE 1xfcA 102 :ADVQVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTELIEAVNLLKEN 1xfcA 140 :RNGVGPAQFPAMLTALRQA T0547 222 :KLLEQFT 1xfcA 162 :DAVRLRG T0547 230 :IHFH 1xfcA 169 :LMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 291 :TLREYANDV 1xfcA 219 :RPDLTFDLV T0547 300 :VFIL 1xfcA 230 :GIAV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 1xfcA 234 :YGLSPVPALGDMGLVPAMTVKCAVALVKSIR T0547 345 :AENKLILKK 1xfcA 271 :YGHTWIAPR T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1xfcA 281 :TNLALLPIGYADGVFRSLGGRLE T0547 377 :YLHDSIDHLESILTLFDLG 1xfcA 309 :RRCPGVGRICMDQFMVDLG T0547 398 :DLQ 1xfcA 328 :PGP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPAD 1xfcA 332 :DVAEGDEAILFGPGIRGEPTAQDWADLV T0547 553 :AQSILDTLEDLD 1xfcA 360 :GTIHYEVVTSPR Number of specific fragments extracted= 20 number of extra gaps= 1 total=10596 Will force an alignment to be made, even if fragment is small Number of alignments=475 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVN 1xfcA 33 :GHAQLMAVVKAD T0547 89 :QYPGFVKNLVKLGK 1xfcA 49 :GATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 1xfcA 63 :AELGVATVDEALALRADGIT T0547 127 :APITV 1xfcA 83 :APVLA T0547 132 :NGFKDRELINIGF 1xfcA 89 :LHPPGIDFGPALL T0547 149 :MGH 1xfcA 102 :ADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTELIEAVN 1xfcA 140 :RNGVGPAQFPAMLT T0547 217 :LLKENKLLEQFT 1xfcA 157 :QAMAEDAVRLRG T0547 230 :IHFH 1xfcA 169 :LMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAVEY 1xfcA 204 :RFEVAHLSNSSATMA T0547 280 :SQFKNEK 1xfcA 222 :LTFDLVR T0547 291 :TLR 1xfcA 229 :PGI T0547 308 :EQKKD 1xfcA 232 :AVYGL T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQE 1xfcA 237 :SPVPALGDMGLVPAMTVKCAVALVKSIR T0547 345 :AENKLILKK 1xfcA 271 :YGHTWIAPR T0547 354 :QNPKLIDELYDLYKSIKPSNALE 1xfcA 281 :TNLALLPIGYADGVFRSLGGRLE T0547 377 :YLHDSIDHLESILTLFDLGYVDLQ 1xfcA 309 :RRCPGVGRICMDQFMVDLGPGPLD T0547 402 :RSNAEILTHLITKKAILLLGDKQNPA 1xfcA 333 :VAEGDEAILFGPGIRGEPTAQDWADL T0547 552 :EAQSILDTLEDLD 1xfcA 359 :VGTIHYEVVTSPR Number of specific fragments extracted= 23 number of extra gaps= 2 total=10619 Will force an alignment to be made, even if fragment is small Number of alignments=476 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKV 1xfcA 33 :GHAQLMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1xfcA 48 :HGATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWLHP T0547 135 :KDRELI 1xfcA 95 :DFGPAL T0547 148 :EMGH 1xfcA 101 :LADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTST 1xfcA 140 :RNGVGPA T0547 210 :ELIEAVNLLKENKLLEQFT 1xfcA 150 :AMLTALRQAMAEDAVRLRG T0547 230 :IHFH 1xfcA 169 :LMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLG 1xfcA 204 :RFEVAHLS T0547 291 :TLREYA 1xfcA 212 :NSSATM T0547 309 :Q 1xfcA 221 :D T0547 313 :LEPDI 1xfcA 222 :LTFDL T0547 319 :IESGRFVAA 1xfcA 227 :VRPGIAVYG T0547 328 :NHAVLIAPVLELFSQE 1xfcA 249 :PAMTVKCAVALVKSIR T0547 344 :YAENKLILKK 1xfcA 279 :RDTNLALLPI T0547 354 :QNPKLIDELY 1xfcA 290 :YADGVFRSLG T0547 373 :NALE 1xfcA 300 :GRLE T0547 377 :YLHDSIDHLESILTLFDLGYVDL 1xfcA 309 :RRCPGVGRICMDQFMVDLGPGPL T0547 401 :DRSNAEILTHLITKKAILLL 1xfcA 332 :DVAEGDEAILFGPGIRGEPT T0547 516 :VGAYQEVLG 1xfcA 352 :AQDWADLVG T0547 554 :QSILDTL 1xfcA 361 :TIHYEVV Number of specific fragments extracted= 25 number of extra gaps= 1 total=10644 Will force an alignment to be made, even if fragment is small Number of alignments=477 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNF 1xfcA 12 :AEAMVDLGAIEHNVRVLREHA T0547 77 :GGFNAVYPLKVNQY 1xfcA 33 :GHAQLMAVVKADGY T0547 91 :PGFVKNLVKLGK 1xfcA 51 :TRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWLHPPGIDFGPALL T0547 150 :GHNIT 1xfcA 102 :ADVQV T0547 156 :TIEGLNELEAIIDIAKE 1xfcA 107 :AVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRV 1xfcA 124 :TGRTATVTVKV T0547 187 :HS 1xfcA 135 :DT T0547 203 :KFGLTST 1xfcA 140 :RNGVGPA T0547 210 :ELIEAVNLLKENKLLEQFT 1xfcA 150 :AMLTALRQAMAEDAVRLRG T0547 230 :IHFH 1xfcA 169 :LMSH T0547 240 :EIHPLKKALNEAGNIYTELRKMGA 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGV T0547 265 :NLKAINLGGGLAV 1xfcA 204 :RFEVAHLSNSSAT T0547 278 :EYSQFKN 1xfcA 225 :DLVRPGI T0547 308 :EQKKD 1xfcA 232 :AVYGL T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQE 1xfcA 237 :SPVPALGDMGLVPAMTVKCAVALVKSIR T0547 344 :YAE 1xfcA 280 :DTN T0547 348 :KLILKK 1xfcA 283 :LALLPI T0547 354 :QNPKLIDEL 1xfcA 290 :YADGVFRSL T0547 372 :SNALE 1xfcA 299 :GGRLE T0547 377 :YLHDSIDHLESILTLFDLGYVDLQ 1xfcA 309 :RRCPGVGRICMDQFMVDLGPGPLD T0547 402 :RSNAEILTHLITKKAILLLGDKQ 1xfcA 333 :VAEGDEAILFGPGIRGEPTAQDW Number of specific fragments extracted= 22 number of extra gaps= 1 total=10666 Will force an alignment to be made, even if fragment is small Number of alignments=478 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)R39 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)T239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 Warning: unaligning (T0547)N585 because last residue in template chain is (1xfcA)A381 T0547 40 :D 1xfcA 12 :A T0547 47 :LLLRFPHLIQKQIENIYGNFNKA 1xfcA 13 :EAMVDLGAIEHNVRVLREHAGHA T0547 80 :NAVYPLKV 1xfcA 36 :QLMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1xfcA 48 :HGATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1xfcA 63 :AELGVATVDEALALRADGITAP T0547 128 :PITVNGFK 1xfcA 86 :LAWLHPPG T0547 137 :RELI 1xfcA 94 :IDFG T0547 143 :GFIAAEM 1xfcA 98 :PALLADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 190 :GVG 1xfcA 140 :RNG T0547 206 :LTS 1xfcA 143 :VGP T0547 209 :TELIEAVNLLKENK 1xfcA 149 :PAMLTALRQAMAED T0547 224 :LEQFTMIHFH 1xfcA 163 :AVRLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKM 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQ T0547 263 :AKNLKA 1xfcA 202 :GVRFEV T0547 278 :EYSQ 1xfcA 208 :AHLS T0547 282 :FKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPD 1xfcA 214 :SATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLV T0547 328 :NHAVLIAPVLELFSQ 1xfcA 249 :PAMTVKCAVALVKSI T0547 343 :EYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHD 1xfcA 270 :SYGHTWIAPRDTNLALLPIGYADGVFRSLGGRLEVLIN T0547 381 :SIDHLESILT 1xfcA 310 :RCPGVGRICM T0547 393 :DLGYVDLQDR 1xfcA 320 :DQFMVDLGPG T0547 403 :SNAEILTHLITKKAILLLGDKQNP 1xfcA 333 :VAEGDEAILFGPGIRGEPTAQDWA T0547 558 :DTLEDLDYDIH 1xfcA 357 :DLVGTIHYEVV T0547 572 :DILNERISNSKLV 1xfcA 368 :TSPRGRITRTYRE Number of specific fragments extracted= 25 number of extra gaps= 1 total=10691 Will force an alignment to be made, even if fragment is small Number of alignments=479 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)E240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGN 1xfcA 12 :AEAMVDLGAIEHNVRVLREH T0547 76 :KGGFNAVYPLKVNQ 1xfcA 32 :AGHAQLMAVVKADG T0547 90 :YPGFVKNLVKLGK 1xfcA 50 :ATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWL T0547 133 :GFK 1xfcA 92 :PGI T0547 142 :IGFIAAEM 1xfcA 97 :GPALLADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 190 :GV 1xfcA 140 :RN T0547 205 :GLTSTELIEAVNLLKENKL 1xfcA 142 :GVGPAQFPAMLTALRQAMA T0547 224 :LEQFTMIHFH 1xfcA 163 :AVRLRGLMSH T0547 241 :IHPLKKALNEAGNIYT 1xfcA 180 :DDSINDVQAQRFTAFL T0547 257 :ELRKM 1xfcA 197 :QAREQ T0547 263 :AKNLKAINL 1xfcA 202 :GVRFEVAHL T0547 275 :LAVEYSQF 1xfcA 222 :LTFDLVRP T0547 307 :AEQKKDL 1xfcA 231 :IAVYGLS T0547 322 :GRFVAANHAVLIAPVLELFSQ 1xfcA 243 :GDMGLVPAMTVKCAVALVKSI T0547 343 :EYAENKLILKK 1xfcA 279 :RDTNLALLPIG T0547 366 :YKSIKPSNALEYLHD 1xfcA 290 :YADGVFRSLGGRLEV T0547 425 :NPADLLAI 1xfcA 306 :INGRRCPG T0547 445 :SL 1xfcA 314 :VG T0547 471 :EPTRSASIWDIT 1xfcA 316 :RICMDQFMVDLG T0547 498 :FLHDVDVEKENYFL 1xfcA 328 :PGPLDVAEGDEAIL T0547 523 :LGMK 1xfcA 342 :FGPG T0547 551 :IEAQSILDTLEDLDYDIHAI 1xfcA 347 :RGEPTAQDWADLVGTIHYEV T0547 599 :FLNDNGYLKSIGV 1xfcA 367 :VTSPRGRITRTYR Number of specific fragments extracted= 26 number of extra gaps= 1 total=10717 Will force an alignment to be made, even if fragment is small Number of alignments=480 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)S608 because last residue in template chain is (1xfcA)A381 T0547 46 :PLLLRFPHLIQKQIENIYGNFN 1xfcA 12 :AEAMVDLGAIEHNVRVLREHAG T0547 78 :GFNAVYPLKVNQY 1xfcA 34 :HAQLMAVVKADGY T0547 91 :PGFVKNLVKLG 1xfcA 51 :TRVAQTALGAG T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITV 1xfcA 62 :AAELGVATVDEALALRADGITAPVLAW T0547 133 :GF 1xfcA 89 :LH T0547 136 :DRELINIGFIAAEM 1xfcA 91 :PPGIDFGPALLADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 190 :GV 1xfcA 140 :RN T0547 205 :GLTSTELIEAVNLLKEN 1xfcA 142 :GVGPAQFPAMLTALRQA T0547 222 :K 1xfcA 162 :D T0547 224 :LEQFTMIHFH 1xfcA 163 :AVRLRGLMSH T0547 240 :EIHPLKKALNEAG 1xfcA 183 :INDVQAQRFTAFL T0547 256 :TELRKM 1xfcA 196 :AQAREQ T0547 263 :AKNLKAINL 1xfcA 202 :GVRFEVAHL T0547 286 :KSR 1xfcA 218 :ARP T0547 293 :REYANDVV 1xfcA 221 :DLTFDLVR T0547 321 :SGRFVAA 1xfcA 229 :PGIAVYG T0547 328 :NHAVLIAPVLELFSQ 1xfcA 249 :PAMTVKCAVALVKSI T0547 343 :EYAENKLILKKQNPKLIDELYD 1xfcA 279 :RDTNLALLPIGYADGVFRSLGG T0547 378 :LHDSIDHLESIL 1xfcA 307 :NGRRCPGVGRIC T0547 390 :TLFDLGYVDLQDRSNAEILTHLIT 1xfcA 320 :DQFMVDLGPGPLDVAEGDEAILFG T0547 414 :KK 1xfcA 345 :GI T0547 418 :LL 1xfcA 349 :EP T0547 449 :SMPDFWGLEQNFPIMPLDRLDEEPTRSAS 1xfcA 351 :TAQDWADLVGTIHYEVVTSPRGRITRTYR T0547 607 :K 1xfcA 380 :E Number of specific fragments extracted= 26 number of extra gaps= 1 total=10743 Will force an alignment to be made, even if fragment is small Number of alignments=481 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)E240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNFN 1xfcA 12 :AEAMVDLGAIEHNVRVLREHAG T0547 78 :GFNAVYPLKVN 1xfcA 34 :HAQLMAVVKAD T0547 89 :QYPGFVKNLVKLGK 1xfcA 49 :GATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWL T0547 133 :GFKDRE 1xfcA 92 :PGIDFG T0547 143 :GFIAAEM 1xfcA 98 :PALLADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTELI 1xfcA 140 :RNGVGPAQFP T0547 213 :EAVNLLKENK 1xfcA 153 :TALRQAMAED T0547 224 :LEQFTMIHFH 1xfcA 163 :AVRLRGLMSH T0547 241 :IHPLKKALNEAGNIYT 1xfcA 180 :DDSINDVQAQRFTAFL T0547 257 :ELRKM 1xfcA 197 :QAREQ T0547 263 :AKNLKAINL 1xfcA 202 :GVRFEVAHL T0547 308 :EQKKD 1xfcA 243 :GDMGL T0547 327 :ANHAVLIAPVLELFSQEY 1xfcA 248 :VPAMTVKCAVALVKSIRA T0547 345 :AENKLILKK 1xfcA 273 :HTWIAPRDT T0547 366 :YKSIKPSNALEYLHDSIDHLESI 1xfcA 282 :NLALLPIGYADGVFRSLGGRLEV T0547 436 :VQERYLVNFSLFQSMPDF 1xfcA 305 :LINGRRCPGVGRICMDQF T0547 478 :IWDIT 1xfcA 323 :MVDLG T0547 497 :LFLHDVDVEKENYFLG 1xfcA 328 :PGPLDVAEGDEAILFG T0547 542 :EK 1xfcA 346 :IR T0547 555 :SILDTLEDLDYDIHAIMDIL 1xfcA 351 :TAQDWADLVGTIHYEVVTSP T0547 603 :NGYLKSIGV 1xfcA 371 :RGRITRTYR Number of specific fragments extracted= 24 number of extra gaps= 1 total=10767 Will force an alignment to be made, even if fragment is small Number of alignments=482 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNFN 1xfcA 12 :AEAMVDLGAIEHNVRVLREHAG T0547 78 :GFNAVYPLKVNQY 1xfcA 34 :HAQLMAVVKADGY T0547 91 :PGFVKNLVKLGK 1xfcA 51 :TRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPIT 1xfcA 63 :AELGVATVDEALALRADGITAPVLA T0547 132 :NGFKD 1xfcA 88 :WLHPP T0547 142 :IGFIAAEM 1xfcA 97 :GPALLADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 190 :GVG 1xfcA 140 :RNG T0547 206 :LTS 1xfcA 143 :VGP T0547 209 :TELIEAVNLLKENK 1xfcA 149 :PAMLTALRQAMAED T0547 224 :LEQFTMIHFH 1xfcA 163 :AVRLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKM 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQ T0547 263 :AKNLKAINLG 1xfcA 202 :GVRFEVAHLS T0547 287 :S 1xfcA 212 :N T0547 292 :LREY 1xfcA 213 :SSAT T0547 303 :L 1xfcA 217 :M T0547 309 :QKKDLEPDIFI 1xfcA 218 :ARPDLTFDLVR T0547 321 :SGRFVAA 1xfcA 229 :PGIAVYG T0547 328 :NHAVLIAPVLELFSQEYAENK 1xfcA 249 :PAMTVKCAVALVKSIRAGEGV T0547 396 :YVDLQ 1xfcA 270 :SYGHT T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLL 1xfcA 277 :APRDTNLALLPIGYADGVFRSLGGRLEV T0547 438 :ERYLVNFSLFQSMPD 1xfcA 307 :NGRRCPGVGRICMDQ T0547 477 :SIWDIT 1xfcA 322 :FMVDLG T0547 497 :LFLHDVDVE 1xfcA 328 :PGPLDVAEG T0547 534 :TEAIISINEKG 1xfcA 337 :DEAILFGPGIR T0547 555 :SILDTLEDLDYDIHAI 1xfcA 351 :TAQDWADLVGTIHYEV T0547 604 :GYLKSIG 1xfcA 372 :GRITRTY Number of specific fragments extracted= 28 number of extra gaps= 1 total=10795 Will force an alignment to be made, even if fragment is small Number of alignments=483 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)E240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNFN 1xfcA 12 :AEAMVDLGAIEHNVRVLREHAG T0547 78 :GFNAVYPLKVNQ 1xfcA 34 :HAQLMAVVKADG T0547 90 :YPGFVKNLVKLGK 1xfcA 50 :ATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFK 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWLHPP T0547 142 :IGFIAAEM 1xfcA 97 :GPALLADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTS 1xfcA 140 :RNGVGP T0547 209 :TELIEAVNLLKENK 1xfcA 149 :PAMLTALRQAMAED T0547 224 :LEQFTMIHFH 1xfcA 163 :AVRLRGLMSH T0547 241 :IHPLKKALNEAGNIYTELRKMGAKNLKAINL 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGVRFEVAHL T0547 304 :KNIAEQKKDLEPDIF 1xfcA 213 :SSATMARPDLTFDLV T0547 321 :SGRFVAA 1xfcA 229 :PGIAVYG T0547 328 :NHAVLIAPVLELFSQEYAENKL 1xfcA 249 :PAMTVKCAVALVKSIRAGEGVS T0547 399 :LQDR 1xfcA 271 :YGHT T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLA 1xfcA 277 :APRDTNLALLPIGYADGVFRSLGGRLEVL T0547 437 :QERYLVNFSLFQSMPD 1xfcA 306 :INGRRCPGVGRICMDQ T0547 474 :RSASIWDIT 1xfcA 322 :FMVDLGPGP T0547 500 :HDVD 1xfcA 331 :LDVA T0547 542 :EKGYEVEGIIEAQ 1xfcA 335 :EGDEAILFGPGIR T0547 555 :SILDTLEDLDYDIHAIM 1xfcA 351 :TAQDWADLVGTIHYEVV Number of specific fragments extracted= 21 number of extra gaps= 1 total=10816 Will force an alignment to be made, even if fragment is small Number of alignments=484 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 T0547 50 :RFPHLIQKQIENIYGNFNKA 1xfcA 16 :VDLGAIEHNVRVLREHAGHA T0547 80 :NAVYPLKV 1xfcA 36 :QLMAVVKA T0547 88 :NQYPGFVKNLVKLGK 1xfcA 48 :HGATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGA 1xfcA 63 :AELGVATVDEALALRADGITAP T0547 128 :PITVNGFK 1xfcA 86 :LAWLHPPG T0547 137 :RELI 1xfcA 94 :IDFG T0547 143 :GFIAAEM 1xfcA 98 :PALLADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 190 :GVG 1xfcA 140 :RNG T0547 206 :LTS 1xfcA 143 :VGP T0547 209 :TELIEAVNLLKENK 1xfcA 149 :PAMLTALRQAMAED T0547 224 :LEQFTMIHFH 1xfcA 163 :AVRLRGLMSH Number of specific fragments extracted= 13 number of extra gaps= 1 total=10829 Will force an alignment to be made, even if fragment is small Number of alignments=485 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)E240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGN 1xfcA 12 :AEAMVDLGAIEHNVRVLREH T0547 76 :KGGFNAVYPLKVNQ 1xfcA 32 :AGHAQLMAVVKADG T0547 90 :YPGFVKNLVKLGK 1xfcA 50 :ATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWL T0547 133 :GFK 1xfcA 92 :PGI T0547 142 :IGFIAAEM 1xfcA 97 :GPALLADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 190 :GV 1xfcA 140 :RN T0547 205 :GLTSTELIEAVNLLKENKL 1xfcA 142 :GVGPAQFPAMLTALRQAMA T0547 224 :LEQFTMIHFH 1xfcA 163 :AVRLRGLMSH T0547 241 :IHPLKKALNEAGNIYT 1xfcA 180 :DDSINDVQAQRFTAFL T0547 257 :ELRKM 1xfcA 197 :QAREQ T0547 263 :AKNLKAINL 1xfcA 202 :GVRFEVAHL T0547 275 :LAVEYSQF 1xfcA 222 :LTFDLVRP T0547 307 :AEQKKDL 1xfcA 231 :IAVYGLS T0547 322 :GRFVAANHAVLIAPVLELFSQ 1xfcA 243 :GDMGLVPAMTVKCAVALVKSI T0547 343 :EYAENKLILKK 1xfcA 279 :RDTNLALLPIG T0547 366 :YKSIKPSNALEYLHD 1xfcA 290 :YADGVFRSLGGRLEV T0547 424 :QNPADLLAI 1xfcA 305 :LINGRRCPG T0547 445 :SL 1xfcA 314 :VG T0547 471 :EPTRSASIWDIT 1xfcA 316 :RICMDQFMVDLG T0547 498 :FLHDVDVEKENYFL 1xfcA 328 :PGPLDVAEGDEAIL T0547 523 :LGMK 1xfcA 342 :FGPG T0547 551 :IEAQSILDTLEDLDYDIHAIM 1xfcA 347 :RGEPTAQDWADLVGTIHYEVV Number of specific fragments extracted= 25 number of extra gaps= 1 total=10854 Will force an alignment to be made, even if fragment is small Number of alignments=486 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNFN 1xfcA 12 :AEAMVDLGAIEHNVRVLREHAG T0547 78 :GFNAVYPLKVNQY 1xfcA 34 :HAQLMAVVKADGY T0547 91 :PGFVKNLVKLG 1xfcA 51 :TRVAQTALGAG T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITV 1xfcA 62 :AAELGVATVDEALALRADGITAPVLAW T0547 133 :GF 1xfcA 89 :LH T0547 136 :DRELINIGFIAAEM 1xfcA 91 :PPGIDFGPALLADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 190 :GV 1xfcA 140 :RN T0547 205 :GLTSTELIEAVNLLKEN 1xfcA 142 :GVGPAQFPAMLTALRQA T0547 222 :K 1xfcA 162 :D T0547 224 :LEQFTMIHFH 1xfcA 163 :AVRLRGLMSH T0547 240 :EIHPLKKALNEAG 1xfcA 183 :INDVQAQRFTAFL T0547 256 :TELRKM 1xfcA 196 :AQAREQ T0547 263 :AKNLKAINL 1xfcA 202 :GVRFEVAHL T0547 286 :KSR 1xfcA 218 :ARP T0547 293 :REYANDVV 1xfcA 221 :DLTFDLVR T0547 321 :SGRFVAA 1xfcA 229 :PGIAVYG T0547 328 :NHAVLIAPVLELFSQ 1xfcA 249 :PAMTVKCAVALVKSI T0547 343 :EYAENKLILKKQNPKLIDELYD 1xfcA 279 :RDTNLALLPIGYADGVFRSLGG T0547 378 :LHDSIDHLESIL 1xfcA 307 :NGRRCPGVGRIC T0547 390 :TLFDLGYVDLQDRSNAEILTHLIT 1xfcA 320 :DQFMVDLGPGPLDVAEGDEAILFG Number of specific fragments extracted= 22 number of extra gaps= 1 total=10876 Will force an alignment to be made, even if fragment is small Number of alignments=487 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)E240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNFN 1xfcA 12 :AEAMVDLGAIEHNVRVLREHAG T0547 78 :GFNAVYPLKVN 1xfcA 34 :HAQLMAVVKAD T0547 89 :QYPGFVKNLVKLGK 1xfcA 49 :GATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWL T0547 133 :GFKDRE 1xfcA 92 :PGIDFG T0547 143 :GFIAAEM 1xfcA 98 :PALLADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTSTELI 1xfcA 140 :RNGVGPAQFP T0547 213 :EAVNLLKENK 1xfcA 153 :TALRQAMAED T0547 224 :LEQFTMIHFH 1xfcA 163 :AVRLRGLMSH T0547 241 :IHPLKKALNEAGNIYT 1xfcA 180 :DDSINDVQAQRFTAFL T0547 257 :ELRKM 1xfcA 197 :QAREQ T0547 263 :AKNLKAINL 1xfcA 202 :GVRFEVAHL T0547 308 :EQKKD 1xfcA 243 :GDMGL T0547 327 :ANHAVLIAPVLELFSQEY 1xfcA 248 :VPAMTVKCAVALVKSIRA T0547 345 :AENKLILKK 1xfcA 273 :HTWIAPRDT T0547 366 :YKSIKPSNALEYLHDSIDHLESI 1xfcA 282 :NLALLPIGYADGVFRSLGGRLEV T0547 436 :VQERYLVNFSLFQSMPDF 1xfcA 305 :LINGRRCPGVGRICMDQF T0547 478 :IWDIT 1xfcA 323 :MVDLG T0547 497 :LFLHDVDVEKENYFLG 1xfcA 328 :PGPLDVAEGDEAILFG T0547 542 :EK 1xfcA 346 :IR T0547 555 :SILDTLEDLDYDIHAIMD 1xfcA 351 :TAQDWADLVGTIHYEVVT Number of specific fragments extracted= 23 number of extra gaps= 1 total=10899 Will force an alignment to be made, even if fragment is small Number of alignments=488 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNFN 1xfcA 12 :AEAMVDLGAIEHNVRVLREHAG T0547 78 :GFNAVYPLKVNQY 1xfcA 34 :HAQLMAVVKADGY T0547 91 :PGFVKNLVKLGK 1xfcA 51 :TRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPIT 1xfcA 63 :AELGVATVDEALALRADGITAPVLA T0547 132 :NGFKD 1xfcA 88 :WLHPP T0547 142 :IGFIAAEM 1xfcA 97 :GPALLADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 190 :GVG 1xfcA 140 :RNG T0547 206 :LTS 1xfcA 143 :VGP T0547 209 :TELIEAVNLLKENK 1xfcA 149 :PAMLTALRQAMAED T0547 224 :LEQFTMIHFH 1xfcA 163 :AVRLRGLMSH T0547 240 :EIHPLKKALNEAGNIYTELRKM 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQ T0547 263 :AKNLKAINLG 1xfcA 202 :GVRFEVAHLS T0547 287 :S 1xfcA 212 :N T0547 292 :LREY 1xfcA 213 :SSAT T0547 303 :L 1xfcA 217 :M T0547 309 :QKKDLEPDIFI 1xfcA 218 :ARPDLTFDLVR T0547 321 :SGRFVAA 1xfcA 229 :PGIAVYG T0547 328 :NHAVLIAPVLELFSQEYAENK 1xfcA 249 :PAMTVKCAVALVKSIRAGEGV T0547 396 :YVDLQ 1xfcA 270 :SYGHT T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLL 1xfcA 277 :APRDTNLALLPIGYADGVFRSLGGRLEV T0547 438 :ERYLVNFSLFQSMPD 1xfcA 307 :NGRRCPGVGRICMDQ T0547 477 :SIWDIT 1xfcA 322 :FMVDLG T0547 497 :LFLHDVDVE 1xfcA 328 :PGPLDVAEG T0547 534 :TEAIISINEKG 1xfcA 337 :DEAILFGPGIR T0547 555 :SILDTLEDLDYD 1xfcA 351 :TAQDWADLVGTI Number of specific fragments extracted= 27 number of extra gaps= 1 total=10926 Will force an alignment to be made, even if fragment is small Number of alignments=489 # 1xfcA read from all-align.a2m # found chain 1xfcA in template set Warning: unaligning (T0547)G45 because first residue in template chain is (1xfcA)L11 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)L138 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)L138 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)N139 Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xfcA)P179 Warning: unaligning (T0547)E240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xfcA)P179 T0547 46 :PLLLRFPHLIQKQIENIYGNFN 1xfcA 12 :AEAMVDLGAIEHNVRVLREHAG T0547 78 :GFNAVYPLKVNQ 1xfcA 34 :HAQLMAVVKADG T0547 90 :YPGFVKNLVKLGK 1xfcA 50 :ATRVAQTALGAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFK 1xfcA 63 :AELGVATVDEALALRADGITAPVLAWLHPP T0547 142 :IGFIAAEM 1xfcA 97 :GPALLADV T0547 154 :TLTIEGLNELEAIIDIAKE 1xfcA 105 :QVAVSSLRQLDELLHAVRR T0547 174 :FKPKPNIGLRVRL 1xfcA 124 :TGRTATVTVKVDT T0547 203 :KFGLTS 1xfcA 140 :RNGVGP T0547 209 :TELIEAVNLLKENK 1xfcA 149 :PAMLTALRQAMAED T0547 224 :LEQFTMIHFH 1xfcA 163 :AVRLRGLMSH T0547 241 :IHPLKKALNEAGNIYTELRKMGAKNLKAINL 1xfcA 180 :DDSINDVQAQRFTAFLAQAREQGVRFEVAHL T0547 304 :KNIAEQKKDLEPDIF 1xfcA 213 :SSATMARPDLTFDLV T0547 321 :SGRFVAA 1xfcA 229 :PGIAVYG T0547 328 :NHAVLIAPVLELFSQEYAENKL 1xfcA 249 :PAMTVKCAVALVKSIRAGEGVS T0547 399 :LQDR 1xfcA 271 :YGHT T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLA 1xfcA 277 :APRDTNLALLPIGYADGVFRSLGGRLEVL T0547 437 :QERYLVNFSLFQSMPD 1xfcA 306 :INGRRCPGVGRICMDQ T0547 474 :RSASIWDIT 1xfcA 322 :FMVDLGPGP T0547 500 :HDVD 1xfcA 331 :LDVA T0547 542 :EKGYEVEGIIEAQ 1xfcA 335 :EGDEAILFGPGIR T0547 555 :SILDTLEDLDYDIHAIM 1xfcA 351 :TAQDWADLVGTIHYEVV Number of specific fragments extracted= 21 number of extra gaps= 1 total=10947 Will force an alignment to be made, even if fragment is small Number of alignments=490 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)L49 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)E386 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 50 :RFPHLI 2dy3A 2 :NLLTTK T0547 57 :KQIENIYGNFNKARKEFG 2dy3A 8 :IDLDAIAHNTRVLKQMAG T0547 78 :GFNAVYPLKVN 2dy3A 26 :PAKLMAVVKAN T0547 89 :QYPGFVKNLVKLG 2dy3A 41 :GVEKVAPVIAAHG T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRE 2dy3A 75 :QEVLCWIWTPEQ T0547 144 :FIAAEMGHNITLTIEGLNELEAIIDIAKE 2dy3A 87 :DFRAAIDRNIDLAVISPAHAKALIETDAE T0547 177 :KPNIGLRVRLHSA 2dy3A 116 :HIRVSIKIDSGLH T0547 203 :KFGLTSTELIEAVNLLKENKLL 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHI T0547 226 :QFTMIHFHL 2dy3A 151 :EVTGMFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEYSQ 2dy3A 190 :ECPVNHVCNSPAFLTRS T0547 287 :SRNYTLREYANDVV 2dy3A 207 :DLHMEMVRPGLAFY T0547 314 :EPDIFIESGRFVA 2dy3A 221 :GLEPVAGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 387 :SILTLFDLGYVDLQDRSNAEILTHLI 2dy3A 266 :GFVAVVPAGYADGMPRHAQGKFSVTI T0547 541 :NEKGYEVEGII 2dy3A 292 :DGLDYPQVGRV T0547 552 :EAQSILDT 2dy3A 304 :MDQFVISL T0547 561 :EDL 2dy3A 312 :GDN T0547 564 :DYDIHAIMDILNERISNSKLVNDKQKK 2dy3A 317 :GVEAGAKAVIFGENGHDATDFAERLDT T0547 592 :ILGELYLFLND 2dy3A 344 :INYEVVCRPTG T0547 604 :GYLKS 2dy3A 356 :TVRAY Number of specific fragments extracted= 22 number of extra gaps= 0 total=10969 Will force an alignment to be made, even if fragment is small Number of alignments=491 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)E386 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 58 :QIENIYGNFNKARKEFG 2dy3A 9 :DLDAIAHNTRVLKQMAG T0547 78 :GFNAVYPLKVN 2dy3A 26 :PAKLMAVVKAN T0547 89 :QYPGFVKNLVKLG 2dy3A 41 :GVEKVAPVIAAHG T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRE 2dy3A 75 :QEVLCWIWTPEQ T0547 144 :FIAAEMGHNITLTIEGLNELEAIIDIAKE 2dy3A 87 :DFRAAIDRNIDLAVISPAHAKALIETDAE T0547 177 :KPNIGLRVRLHSA 2dy3A 116 :HIRVSIKIDSGLH T0547 203 :KFGLTSTELIEAVNLLKENKLL 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHI T0547 226 :QFTMIHFHL 2dy3A 151 :EVTGMFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEYSQ 2dy3A 190 :ECPVNHVCNSPAFLTRS T0547 287 :SRNYTLREYANDVV 2dy3A 207 :DLHMEMVRPGLAFY T0547 314 :EPDIFIESGRFVA 2dy3A 221 :GLEPVAGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 387 :SILTLFDLGYVDLQDRSNAEILTHLI 2dy3A 266 :GFVAVVPAGYADGMPRHAQGKFSVTI T0547 472 :PTRSASIWDITCDSDGEISY 2dy3A 292 :DGLDYPQVGRVCMDQFVISL T0547 496 :PLFLHDVDV 2dy3A 312 :GDNPHGVEA T0547 508 :NYFLGFFLVGAYQEVLGMKHNLF 2dy3A 321 :GAKAVIFGENGHDATDFAERLDT T0547 532 :HPTEAIISINE 2dy3A 344 :INYEVVCRPTG Number of specific fragments extracted= 19 number of extra gaps= 0 total=10988 Will force an alignment to be made, even if fragment is small Number of alignments=492 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)L49 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)S387 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 Warning: unaligning (T0547)I609 because last residue in template chain is (2dy3A)V361 T0547 50 :RFP 2dy3A 2 :NLL T0547 54 :LIQKQIENIYGNFNKARKEFG 2dy3A 5 :TTKIDLDAIAHNTRVLKQMAG T0547 78 :GFNAVYPLKVNQ 2dy3A 26 :PAKLMAVVKANA T0547 90 :YPGFVKNLVKLG 2dy3A 42 :VEKVAPVIAAHG T0547 106 :Y 2dy3A 54 :A T0547 107 :GLEAGSKAELLLAMAYNNEG 2dy3A 56 :AFGVATLAEAMQLRDIGISQ T0547 128 :PITVNGFKDRE 2dy3A 76 :EVLCWIWTPEQ T0547 141 :NIGFIAAE 2dy3A 87 :DFRAAIDR T0547 152 :NITLTIEGLNELEAIIDIA 2dy3A 95 :NIDLAVISPAHAKALIETD T0547 175 :KPKPNIGLRVRLHS 2dy3A 114 :AEHIRVSIKIDSGL T0547 202 :SKFGLTSTELIEAVNLLKENKLL 2dy3A 128 :HRSGVDEQEWEGVFSALAAAPHI T0547 226 :QFTMIHFHL 2dy3A 151 :EVTGMFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEYSQ 2dy3A 190 :ECPVNHVCNSPAFLTRS T0547 284 :N 2dy3A 207 :D T0547 288 :RNYTLREYANDV 2dy3A 208 :LHMEMVRPGLAF T0547 313 :LEPDIFIESGRFVA 2dy3A 220 :YGLEPVAGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 388 :IL 2dy3A 266 :GF T0547 390 :TLFDLGYVDLQDRSNAEILTHLI 2dy3A 269 :AVVPAGYADGMPRHAQGKFSVTI T0547 543 :KGYEV 2dy3A 294 :LDYPQ T0547 548 :EGIIEAQSIL 2dy3A 300 :GRVCMDQFVI T0547 559 :TLEDL 2dy3A 310 :SLGDN T0547 564 :DYDIHAIMDILNERISNSKLVN 2dy3A 317 :GVEAGAKAVIFGENGHDATDFA T0547 587 :KQKKHILGELYLFLNDNGYLKS 2dy3A 339 :ERLDTINYEVVCRPTGRTVRAY Number of specific fragments extracted= 25 number of extra gaps= 0 total=11013 Will force an alignment to be made, even if fragment is small Number of alignments=493 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)S387 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 59 :IENIYGNFNKARKEFG 2dy3A 10 :LDAIAHNTRVLKQMAG T0547 78 :GFNAVYPLKVNQ 2dy3A 26 :PAKLMAVVKANA T0547 90 :YPGFVKNLVKLG 2dy3A 42 :VEKVAPVIAAHG T0547 106 :Y 2dy3A 54 :A T0547 107 :GLEAGSKAELLLAMAYNNEG 2dy3A 56 :AFGVATLAEAMQLRDIGISQ T0547 128 :PITVNGFKDRE 2dy3A 76 :EVLCWIWTPEQ T0547 141 :NIGFIAAE 2dy3A 87 :DFRAAIDR T0547 152 :NITLTIEGLNELEAIIDIA 2dy3A 95 :NIDLAVISPAHAKALIETD T0547 175 :KPKPNIGLRVRLHS 2dy3A 114 :AEHIRVSIKIDSGL T0547 202 :SKFGLTSTELIEAVNLLKENKLL 2dy3A 128 :HRSGVDEQEWEGVFSALAAAPHI T0547 226 :QFTMIHFHL 2dy3A 151 :EVTGMFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEYSQ 2dy3A 190 :ECPVNHVCNSPAFLTRS T0547 284 :N 2dy3A 207 :D T0547 288 :RNYTLREYANDV 2dy3A 208 :LHMEMVRPGLAF T0547 313 :LEPDIFIESGRFVA 2dy3A 220 :YGLEPVAGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 388 :IL 2dy3A 266 :GF T0547 390 :TLFDLGYVDLQDRSNAEILTHLI 2dy3A 269 :AVVPAGYADGMPRHAQGKFSVTI T0547 472 :PTRSASIWDITCDSDGEISYSK 2dy3A 292 :DGLDYPQVGRVCMDQFVISLGD T0547 502 :VD 2dy3A 314 :NP T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFT 2dy3A 317 :GVEAGAKAVIFGENGHDATDFAERLDTI Number of specific fragments extracted= 22 number of extra gaps= 0 total=11035 Will force an alignment to be made, even if fragment is small Number of alignments=494 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)E164 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E535 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 1 :MMDYGIDI 2dy3A 1 :MNLLTTKI T0547 11 :NENFIIKNGKVCINYEKKPAIIDIVK 2dy3A 9 :DLDAIAHNTRVLKQMAGPAKLMAVVK T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEF 2dy3A 35 :ANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQL T0547 75 :YKGGF 2dy3A 69 :RDIGI T0547 84 :PLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITV 2dy3A 74 :SQEVLCWIWTPEQDFRAAIDRNIDLAVISPAHAKALIETDAEHIRVSI T0547 132 :NGFKDRELINIGFIAAEMGH 2dy3A 130 :SGVDEQEWEGVFSALAAAPH T0547 155 :LTI 2dy3A 150 :IEV T0547 165 :AIIDIAKERFK 2dy3A 170 :TDRQIIAFRRA T0547 178 :PNIGLRVRLHSAGVGIWAKSGGINSK 2dy3A 189 :LECPVNHVCNSPAFLTRSDLHMEMVR T0547 204 :FGLTSTE 2dy3A 220 :YGLEPVA T0547 536 :AIISINEKGYE 2dy3A 266 :GFVAVVPAGYA T0547 547 :VEG 2dy3A 298 :QVG T0547 550 :IIEAQSILDTLEDLDYDIHAI 2dy3A 302 :VCMDQFVISLGDNPHGVEAGA T0547 571 :MDILNERISNSKL 2dy3A 325 :VIFGENGHDATDF T0547 586 :DKQKKHILGELYLFLNDN 2dy3A 338 :AERLDTINYEVVCRPTGR T0547 606 :LKSIGV 2dy3A 356 :TVRAYV Number of specific fragments extracted= 16 number of extra gaps= 0 total=11051 Will force an alignment to be made, even if fragment is small Number of alignments=495 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)H233 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)H242 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)K370 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)E386 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 100 :LGKDYNYGLEAGSKAELLLA 2dy3A 32 :VVKANAYNHGVEKVAPVIAA T0547 120 :MAYNNEGAPITVNGFKDRELINIGFI 2dy3A 59 :VATLAEAMQLRDIGISQEVLCWIWTP T0547 146 :AAEMGHNITLTIEGLNELEAIIDI 2dy3A 89 :RAAIDRNIDLAVISPAHAKALIET T0547 187 :HSAGVGIWAKSG 2dy3A 115 :EHIRVSIKIDSG T0547 201 :NSKFGLTSTELIEAVNLLKENKLL 2dy3A 127 :LHRSGVDEQEWEGVFSALAAAPHI T0547 225 :EQFTMIHF 2dy3A 152 :VTGMFTHL T0547 243 :PLKKALNEAGN 2dy3A 170 :TDRQIIAFRRA T0547 256 :TELRKMGA 2dy3A 191 :CPVNHVCN T0547 265 :NLKAINLGG 2dy3A 209 :HMEMVRPGL T0547 364 :DLYKSI 2dy3A 243 :SVVKQI T0547 387 :SILTLFDLGYVDLQDRSNAEILTHLITKKAILLLG 2dy3A 266 :GFVAVVPAGYADGMPRHAQGKFSVTIDGLDYPQVG Number of specific fragments extracted= 11 number of extra gaps= 0 total=11062 Will force an alignment to be made, even if fragment is small Number of alignments=496 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 1 :MMDYGID 2dy3A 1 :MNLLTTK T0547 50 :RFPHLIQKQIENIYGNF 2dy3A 8 :IDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQYPG 2dy3A 25 :GPAKLMAVVKANAYNH T0547 93 :FVKNLVKLGK 2dy3A 45 :VAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 2dy3A 55 :DAFGVATLAEAMQLRDIGISQEVLCWI T0547 135 :KDRE 2dy3A 82 :WTPE T0547 140 :INIGF 2dy3A 86 :QDFRA T0547 146 :AAEMGHNI 2dy3A 91 :AIDRNIDL T0547 155 :LTI 2dy3A 99 :AVI T0547 159 :GLNELEAIIDIAKE 2dy3A 102 :SPAHAKALIETDAE T0547 177 :KPNIGLRVRLH 2dy3A 116 :HIRVSIKIDSG T0547 191 :VG 2dy3A 127 :LH T0547 203 :KFGLTSTELIEAVNLLKENKLLE 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIE T0547 227 :FTMIHFHL 2dy3A 152 :VTGMFTHL T0547 245 :KKALNEAGNIYTELRKMGAKNL 2dy3A 170 :TDRQIIAFRRALALARKHGLEC T0547 276 :AVEY 2dy3A 192 :PVNH T0547 282 :FKNEK 2dy3A 196 :VCNSP T0547 291 :TLREYANDVVFILKNIAEQKKD 2dy3A 201 :AFLTRSDLHMEMVRPGLAFYGL T0547 314 :EPDIFIESG 2dy3A 223 :EPVAGLEHG T0547 326 :AANHAVLIAPVLELFSQ 2dy3A 232 :LKPAMTWEAKVSVVKQI T0547 346 :ENKLILKKQNPKLIDELYDLYKSIKPS 2dy3A 266 :GFVAVVPAGYADGMPRHAQGKFSVTID T0547 379 :HDSIDHLESILT 2dy3A 293 :GLDYPQVGRVCM T0547 393 :DLGYVDLQD 2dy3A 305 :DQFVISLGD T0547 407 :ILTHLITKKAILLL 2dy3A 314 :NPHGVEAGAKAVIF T0547 423 :KQNPADLLAIQDEVQE 2dy3A 328 :GENGHDATDFAERLDT T0547 477 :SIWDITCDSDGE 2dy3A 344 :INYEVVCRPTGR T0547 555 :SI 2dy3A 356 :TV T0547 608 :SIGV 2dy3A 358 :RAYV Number of specific fragments extracted= 28 number of extra gaps= 0 total=11090 Will force an alignment to be made, even if fragment is small Number of alignments=497 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 Warning: unaligning (T0547)I540 because last residue in template chain is (2dy3A)V361 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQY 2dy3A 25 :GPAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRE 2dy3A 75 :QEVLCWIWTPEQ T0547 141 :NIGF 2dy3A 87 :DFRA T0547 146 :AAEMGH 2dy3A 91 :AIDRNI T0547 153 :I 2dy3A 97 :D T0547 155 :LTIEGLNELEAII 2dy3A 98 :LAVISPAHAKALI T0547 172 :ERFKPKPNIGLRVRLH 2dy3A 111 :ETDAEHIRVSIKIDSG T0547 188 :S 2dy3A 128 :H T0547 203 :KFGLTSTELIEAVNLLKENKLL 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHI T0547 226 :QFTMIHFHL 2dy3A 151 :EVTGMFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEY 2dy3A 190 :ECPVNHVCNSPAFLT T0547 282 :FKNEKSRNYTL 2dy3A 205 :RSDLHMEMVRP T0547 306 :IAEQKKDL 2dy3A 216 :GLAFYGLE T0547 318 :FIESGRFVA 2dy3A 225 :VAGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKKQNP 2dy3A 266 :GFVAVVPAGYA T0547 357 :KLIDE 2dy3A 278 :GMPRH T0547 362 :LYDLY 2dy3A 284 :QGKFS T0547 370 :KPSNA 2dy3A 289 :VTIDG T0547 380 :DSIDHLESILTLFDLGYVD 2dy3A 294 :LDYPQVGRVCMDQFVISLG T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2dy3A 315 :PHGVEAGAKAVIFGENGHDATDFAERL T0547 426 :PADLLAIQDEVQE 2dy3A 343 :TINYEVVCRPTGR T0547 535 :EAIIS 2dy3A 356 :TVRAY Number of specific fragments extracted= 27 number of extra gaps= 0 total=11117 Will force an alignment to be made, even if fragment is small Number of alignments=498 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 Warning: unaligning (T0547)S445 because last residue in template chain is (2dy3A)V361 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQY 2dy3A 25 :GPAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDR 2dy3A 75 :QEVLCWIWTPE T0547 140 :INIGF 2dy3A 86 :QDFRA T0547 146 :AAEMG 2dy3A 91 :AIDRN T0547 153 :ITLTIEGLNELEAIIDIAKE 2dy3A 96 :IDLAVISPAHAKALIETDAE T0547 177 :KPNIGLRVRLH 2dy3A 116 :HIRVSIKIDSG T0547 188 :S 2dy3A 128 :H T0547 203 :KFGLTSTELIEAVNLLKENKLL 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHI T0547 226 :QFTMIHFHL 2dy3A 151 :EVTGMFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEY 2dy3A 190 :ECPVNHVCNSPAFLT T0547 282 :FKNEKS 2dy3A 205 :RSDLHM T0547 291 :T 2dy3A 211 :E T0547 318 :FIESGRFVAA 2dy3A 212 :MVRPGLAFYG T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKKQNPK 2dy3A 266 :GFVAVVPAGYAD T0547 358 :LIDE 2dy3A 279 :MPRH T0547 362 :LYDLYKSIKP 2dy3A 284 :QGKFSVTIDG T0547 380 :DSIDHLESILTLFDLGYVD 2dy3A 294 :LDYPQVGRVCMDQFVISLG T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNF 2dy3A 315 :PHGVEAGAKAVIFGENGHDATDFAERLDTINYEVVCRPTGRTVRAY Number of specific fragments extracted= 23 number of extra gaps= 0 total=11140 Will force an alignment to be made, even if fragment is small Number of alignments=499 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 Warning: unaligning (T0547)I540 because last residue in template chain is (2dy3A)V361 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVN 2dy3A 25 :GPAKLMAVVKAN T0547 89 :QYPGFVKNLVKLGK 2dy3A 41 :GVEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRE 2dy3A 75 :QEVLCWIWTPEQ T0547 141 :NIGF 2dy3A 87 :DFRA T0547 146 :AAEMGH 2dy3A 91 :AIDRNI T0547 153 :I 2dy3A 97 :D T0547 155 :LTIEGLNELEAIIDIAKE 2dy3A 98 :LAVISPAHAKALIETDAE T0547 177 :KPNIGLRVRLH 2dy3A 116 :HIRVSIKIDSG T0547 202 :SKFGLTSTELIEAVNLLKENKLL 2dy3A 128 :HRSGVDEQEWEGVFSALAAAPHI T0547 226 :QFTMIHFHL 2dy3A 151 :EVTGMFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEY 2dy3A 190 :ECPVNHVCNSPAFLT T0547 282 :FKNE 2dy3A 205 :RSDL T0547 286 :KSR 2dy3A 212 :MVR T0547 291 :TLR 2dy3A 215 :PGL T0547 308 :EQKKDLE 2dy3A 218 :AFYGLEP T0547 318 :FIESGRFVA 2dy3A 225 :VAGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKKQNPK 2dy3A 266 :GFVAVVPAGYAD T0547 358 :LIDE 2dy3A 279 :MPRH T0547 362 :LYDLYK 2dy3A 284 :QGKFSV T0547 371 :PSN 2dy3A 290 :TID T0547 379 :HDSIDHLESILTLFDLGYVD 2dy3A 293 :GLDYPQVGRVCMDQFVISLG T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2dy3A 315 :PHGVEAGAKAVIFGENGHDATDFAERL T0547 426 :PADLLAIQDEVQER 2dy3A 343 :TINYEVVCRPTGRT T0547 536 :AIIS 2dy3A 357 :VRAY Number of specific fragments extracted= 28 number of extra gaps= 0 total=11168 Will force an alignment to be made, even if fragment is small Number of alignments=500 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQY 2dy3A 25 :GPAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDR 2dy3A 75 :QEVLCWIWTPE T0547 140 :INIGF 2dy3A 86 :QDFRA T0547 146 :AAEMGH 2dy3A 91 :AIDRNI T0547 153 :I 2dy3A 97 :D T0547 155 :LTIEGLNELEAIID 2dy3A 98 :LAVISPAHAKALIE T0547 173 :RFKPKPNIGLRVRLH 2dy3A 112 :TDAEHIRVSIKIDSG T0547 188 :S 2dy3A 128 :H T0547 203 :KFGLTSTELIEAVNLLKENKLL 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHI T0547 226 :QFTMIHFHL 2dy3A 151 :EVTGMFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEY 2dy3A 190 :ECPVNHVCNSPAFLT T0547 282 :FKNEKSR 2dy3A 205 :RSDLHME T0547 318 :FIESGRFVAA 2dy3A 212 :MVRPGLAFYG T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKKQNPKLIDE 2dy3A 266 :GFVAVVPAGYADGMPR T0547 364 :DLYKSIK 2dy3A 282 :HAQGKFS T0547 378 :LHDSIDHLESILTLFDLGYVD 2dy3A 292 :DGLDYPQVGRVCMDQFVISLG T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 2dy3A 315 :PHGVEAGAKAVIFGENGHDATDFAERLDTINYEVVC T0547 455 :GLEQNFPIMP 2dy3A 351 :RPTGRTVRAY Number of specific fragments extracted= 23 number of extra gaps= 0 total=11191 Will force an alignment to be made, even if fragment is small Number of alignments=501 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVN 2dy3A 25 :GPAKLMAVVKAN T0547 89 :QYPGFVKNLVKLGK 2dy3A 41 :GVEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRE 2dy3A 75 :QEVLCWIWTPEQ T0547 141 :NIGF 2dy3A 87 :DFRA T0547 146 :AAEMGH 2dy3A 91 :AIDRNI T0547 153 :I 2dy3A 97 :D T0547 155 :LTIEGLNELEAII 2dy3A 98 :LAVISPAHAKALI T0547 171 :KE 2dy3A 111 :ET T0547 174 :FKPKPNIGLRVRLH 2dy3A 113 :DAEHIRVSIKIDSG T0547 202 :SKFGLTSTELIEAVNLLKENKLL 2dy3A 128 :HRSGVDEQEWEGVFSALAAAPHI T0547 226 :QFTMIHFHL 2dy3A 151 :EVTGMFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEY 2dy3A 190 :ECPVNHVCNSPAFLT T0547 282 :FKNE 2dy3A 205 :RSDL T0547 288 :RNYTL 2dy3A 213 :VRPGL T0547 308 :EQKKDLEP 2dy3A 218 :AFYGLEPV T0547 319 :IESGRFVA 2dy3A 226 :AGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKKQNPK 2dy3A 266 :GFVAVVPAGYAD T0547 358 :LIDE 2dy3A 279 :MPRH T0547 362 :LYDLYK 2dy3A 284 :QGKFSV T0547 378 :LHDSIDHLESILTLFDLGYVD 2dy3A 292 :DGLDYPQVGRVCMDQFVISLG T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2dy3A 315 :PHGVEAGAKAVIFGENGHDATDFAERL T0547 426 :PADLLAIQDE 2dy3A 343 :TINYEVVCRP T0547 473 :TRSASIWD 2dy3A 353 :TGRTVRAY Number of specific fragments extracted= 27 number of extra gaps= 0 total=11218 Will force an alignment to be made, even if fragment is small Number of alignments=502 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 T0547 50 :RFPHLIQKQIENIYGNF 2dy3A 8 :IDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQYPG 2dy3A 25 :GPAKLMAVVKANAYNH T0547 93 :FVKNLVKLGK 2dy3A 45 :VAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 2dy3A 55 :DAFGVATLAEAMQLRDIGISQEVLCWI T0547 135 :KDRE 2dy3A 82 :WTPE T0547 140 :INIGF 2dy3A 86 :QDFRA T0547 146 :AAEMGHNI 2dy3A 91 :AIDRNIDL T0547 155 :LTI 2dy3A 99 :AVI T0547 159 :GLNELEAIIDIAKE 2dy3A 102 :SPAHAKALIETDAE T0547 177 :KPNIGLRVRLH 2dy3A 116 :HIRVSIKIDSG T0547 191 :VG 2dy3A 127 :LH T0547 203 :KFGLTSTELIEAVNLLKENKLLE 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIE T0547 227 :FTMIHFHL 2dy3A 152 :VTGMFTHL T0547 245 :KKALNEAGNIYTELRKMGAKN 2dy3A 170 :TDRQIIAFRRALALARKHGLE Number of specific fragments extracted= 14 number of extra gaps= 0 total=11232 Will force an alignment to be made, even if fragment is small Number of alignments=503 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQY 2dy3A 25 :GPAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRE 2dy3A 75 :QEVLCWIWTPEQ T0547 141 :NIGF 2dy3A 87 :DFRA T0547 146 :AAEMGH 2dy3A 91 :AIDRNI T0547 153 :I 2dy3A 97 :D T0547 155 :LTIEGLNELEAII 2dy3A 98 :LAVISPAHAKALI T0547 172 :ERFKPKPNIGLRVRLH 2dy3A 111 :ETDAEHIRVSIKIDSG T0547 188 :S 2dy3A 128 :H T0547 203 :KFGLTSTELIEAVNLLKENKLL 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHI T0547 226 :QFTMIHFHL 2dy3A 151 :EVTGMFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEY 2dy3A 190 :ECPVNHVCNSPAFLT T0547 282 :FKNEKSRNYTL 2dy3A 205 :RSDLHMEMVRP T0547 306 :IAEQKKDL 2dy3A 216 :GLAFYGLE T0547 318 :FIESGRFVA 2dy3A 225 :VAGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKKQNP 2dy3A 266 :GFVAVVPAGYA T0547 357 :KLIDE 2dy3A 278 :GMPRH T0547 362 :LYDLY 2dy3A 284 :QGKFS T0547 370 :KPSNA 2dy3A 289 :VTIDG T0547 380 :DSIDHLESILTLFDLGYVD 2dy3A 294 :LDYPQVGRVCMDQFVISLG T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPA 2dy3A 315 :PHGVEAGAKAVIFGENGHDATDFAERLDT T0547 428 :DLLAIQDEVQERY 2dy3A 345 :NYEVVCRPTGRTV Number of specific fragments extracted= 26 number of extra gaps= 0 total=11258 Will force an alignment to be made, even if fragment is small Number of alignments=504 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQY 2dy3A 25 :GPAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDR 2dy3A 75 :QEVLCWIWTPE T0547 140 :INIGF 2dy3A 86 :QDFRA T0547 146 :AAEMG 2dy3A 91 :AIDRN T0547 153 :ITLTIEGLNELEAIIDIAKE 2dy3A 96 :IDLAVISPAHAKALIETDAE T0547 177 :KPNIGLRVRLH 2dy3A 116 :HIRVSIKIDSG T0547 188 :S 2dy3A 128 :H T0547 203 :KFGLTSTELIEAVNLLKENKLL 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHI T0547 226 :QFTMIHFHL 2dy3A 151 :EVTGMFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEY 2dy3A 190 :ECPVNHVCNSPAFLT T0547 282 :FKNEKS 2dy3A 205 :RSDLHM T0547 291 :T 2dy3A 211 :E T0547 318 :FIESGRFVAA 2dy3A 212 :MVRPGLAFYG T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKKQNPK 2dy3A 266 :GFVAVVPAGYAD T0547 358 :LIDE 2dy3A 279 :MPRH T0547 362 :LYDLYKSIKP 2dy3A 284 :QGKFSVTIDG T0547 380 :DSIDHLESILTLFDLGYVD 2dy3A 294 :LDYPQVGRVCMDQFVISLG T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNF 2dy3A 315 :PHGVEAGAKAVIFGENGHDATDFAERLDTINYEVVCRPTGRTVRAY Number of specific fragments extracted= 23 number of extra gaps= 0 total=11281 Will force an alignment to be made, even if fragment is small Number of alignments=505 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVN 2dy3A 25 :GPAKLMAVVKAN T0547 89 :QYPGFVKNLVKLGK 2dy3A 41 :GVEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRE 2dy3A 75 :QEVLCWIWTPEQ T0547 141 :NIGF 2dy3A 87 :DFRA T0547 146 :AAEMGH 2dy3A 91 :AIDRNI T0547 153 :I 2dy3A 97 :D T0547 155 :LTIEGLNELEAIIDIAKE 2dy3A 98 :LAVISPAHAKALIETDAE T0547 177 :KPNIGLRVRLH 2dy3A 116 :HIRVSIKIDSG T0547 202 :SKFGLTSTELIEAVNLLKENKLL 2dy3A 128 :HRSGVDEQEWEGVFSALAAAPHI T0547 226 :QFTMIHFHL 2dy3A 151 :EVTGMFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEY 2dy3A 190 :ECPVNHVCNSPAFLT T0547 282 :FKNE 2dy3A 205 :RSDL T0547 286 :KSR 2dy3A 212 :MVR T0547 291 :TLR 2dy3A 215 :PGL T0547 308 :EQKKDLE 2dy3A 218 :AFYGLEP T0547 318 :FIESGRFVA 2dy3A 225 :VAGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKKQNPK 2dy3A 266 :GFVAVVPAGYAD T0547 358 :LIDE 2dy3A 279 :MPRH T0547 362 :LYDLYK 2dy3A 284 :QGKFSV T0547 371 :PSN 2dy3A 290 :TID T0547 379 :HDSIDHLESILTLFDLGYVD 2dy3A 293 :GLDYPQVGRVCMDQFVISLG T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVN 2dy3A 315 :PHGVEAGAKAVIFGENGHDATDFAERLDTINYEVVCRPTGRTVRA Number of specific fragments extracted= 26 number of extra gaps= 0 total=11307 Will force an alignment to be made, even if fragment is small Number of alignments=506 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQY 2dy3A 25 :GPAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDR 2dy3A 75 :QEVLCWIWTPE T0547 140 :INIGF 2dy3A 86 :QDFRA T0547 146 :AAEMGH 2dy3A 91 :AIDRNI T0547 153 :I 2dy3A 97 :D T0547 155 :LTIEGLNELEAIID 2dy3A 98 :LAVISPAHAKALIE T0547 173 :RFKPKPNIGLRVRLH 2dy3A 112 :TDAEHIRVSIKIDSG T0547 188 :S 2dy3A 128 :H T0547 203 :KFGLTSTELIEAVNLLKENKLL 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHI T0547 226 :QFTMIHFHL 2dy3A 151 :EVTGMFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEY 2dy3A 190 :ECPVNHVCNSPAFLT T0547 282 :FKNEKSR 2dy3A 205 :RSDLHME T0547 318 :FIESGRFVAA 2dy3A 212 :MVRPGLAFYG T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKKQNPKLIDE 2dy3A 266 :GFVAVVPAGYADGMPR T0547 364 :DLYKSIK 2dy3A 282 :HAQGKFS T0547 378 :LHDSIDHLESILTLFDLGYVD 2dy3A 292 :DGLDYPQVGRVCMDQFVISLG T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 2dy3A 315 :PHGVEAGAKAVIFGENGHDATDFAERLDTINYEVVC Number of specific fragments extracted= 22 number of extra gaps= 0 total=11329 Will force an alignment to be made, even if fragment is small Number of alignments=507 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVN 2dy3A 25 :GPAKLMAVVKAN T0547 89 :QYPGFVKNLVKLGK 2dy3A 41 :GVEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRE 2dy3A 75 :QEVLCWIWTPEQ T0547 141 :NIGF 2dy3A 87 :DFRA T0547 146 :AAEMGH 2dy3A 91 :AIDRNI T0547 153 :I 2dy3A 97 :D T0547 155 :LTIEGLNELEAII 2dy3A 98 :LAVISPAHAKALI T0547 171 :KE 2dy3A 111 :ET T0547 174 :FKPKPNIGLRVRLH 2dy3A 113 :DAEHIRVSIKIDSG T0547 202 :SKFGLTSTELIEAVNLLKENKLL 2dy3A 128 :HRSGVDEQEWEGVFSALAAAPHI T0547 226 :QFTMIHFHL 2dy3A 151 :EVTGMFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEY 2dy3A 190 :ECPVNHVCNSPAFLT T0547 282 :FKNE 2dy3A 205 :RSDL T0547 288 :RNYTL 2dy3A 213 :VRPGL T0547 308 :EQKKDLEP 2dy3A 218 :AFYGLEPV T0547 319 :IESGRFVA 2dy3A 226 :AGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKKQNPK 2dy3A 266 :GFVAVVPAGYAD T0547 358 :LIDE 2dy3A 279 :MPRH T0547 362 :LYDLYK 2dy3A 284 :QGKFSV T0547 378 :LHDSIDHLESILTLFDLGYVD 2dy3A 292 :DGLDYPQVGRVCMDQFVISLG T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2dy3A 315 :PHGVEAGAKAVIFGENGHDATDFAERL T0547 426 :PADLLAIQ 2dy3A 343 :TINYEVVC Number of specific fragments extracted= 26 number of extra gaps= 0 total=11355 Will force an alignment to be made, even if fragment is small Number of alignments=508 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 1 :MMD 2dy3A 1 :MNL T0547 46 :PLLLRFPHLIQKQIENIYGNF 2dy3A 4 :LTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQYPG 2dy3A 25 :GPAKLMAVVKANAYNH T0547 93 :FVKNLVKLGK 2dy3A 45 :VAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2dy3A 55 :DAFGVATLAEAMQLRDIGISQEVLCW T0547 135 :KDRELINIGF 2dy3A 83 :TPEQDFRAAI T0547 148 :EMGHNIT 2dy3A 93 :DRNIDLA T0547 156 :TI 2dy3A 100 :VI T0547 159 :GLNELEAIIDIAKE 2dy3A 102 :SPAHAKALIETDAE T0547 177 :KPNIGLRV 2dy3A 116 :HIRVSIKI T0547 187 :HSAGV 2dy3A 124 :DSGLH T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIEVTG T0547 230 :IHFHL 2dy3A 155 :MFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NL 2dy3A 190 :EC T0547 276 :AVEYSQFKNEKS 2dy3A 192 :PVNHVCNSPAFL T0547 291 :TLREY 2dy3A 204 :TRSDL T0547 296 :ANDVVFILKNI 2dy3A 210 :MEMVRPGLAFY T0547 311 :KD 2dy3A 221 :GL T0547 314 :EPDIFIESG 2dy3A 223 :EPVAGLEHG T0547 326 :AANHAVLIAPVLELFSQ 2dy3A 232 :LKPAMTWEAKVSVVKQI T0547 346 :ENKLILKK 2dy3A 266 :GFVAVVPA T0547 354 :QNPKLIDELYDLYK 2dy3A 275 :YADGMPRHAQGKFS T0547 372 :SNALEYLHDSIDHLE 2dy3A 289 :VTIDGLDYPQVGRVC T0547 389 :LTLFDLGYVDLQ 2dy3A 304 :MDQFVISLGDNP T0547 401 :DRSNAEILTHLIT 2dy3A 317 :GVEAGAKAVIFGE T0547 425 :NPADLLAIQDEVQERYLVNFSLF 2dy3A 330 :NGHDATDFAERLDTINYEVVCRP T0547 552 :EAQSIL 2dy3A 353 :TGRTVR T0547 609 :IGV 2dy3A 359 :AYV Number of specific fragments extracted= 29 number of extra gaps= 0 total=11384 Will force an alignment to be made, even if fragment is small Number of alignments=509 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 Warning: unaligning (T0547)S445 because last residue in template chain is (2dy3A)V361 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQY 2dy3A 25 :GPAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRELINIGF 2dy3A 75 :QEVLCWIWTPEQDFRAAI T0547 148 :EMGH 2dy3A 93 :DRNI T0547 154 :TLTIEGLNELEAII 2dy3A 97 :DLAVISPAHAKALI T0547 174 :FKPKPNIGLRVRLH 2dy3A 113 :DAEHIRVSIKIDSG T0547 190 :GV 2dy3A 127 :LH T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIEVTG T0547 230 :IHFHL 2dy3A 155 :MFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRNY 2dy3A 190 :ECPVNHVCNSPAFLTRSDLHMEMVRP T0547 306 :IAEQKKD 2dy3A 216 :GLAFYGL T0547 316 :DIFIESGRFVA 2dy3A 223 :EPVAGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKK 2dy3A 266 :GFVAVVPA T0547 354 :QNPKLIDEL 2dy3A 275 :YADGMPRHA T0547 366 :YKSIKPSNA 2dy3A 285 :GKFSVTIDG T0547 377 :YLHDSIDHLESILTL 2dy3A 294 :LDYPQVGRVCMDQFV T0547 394 :LGYVDLQ 2dy3A 309 :ISLGDNP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNF 2dy3A 317 :GVEAGAKAVIFGENGHDATDFAERLDTINYEVVCRPTGRTVRAY Number of specific fragments extracted= 22 number of extra gaps= 0 total=11406 Will force an alignment to be made, even if fragment is small Number of alignments=510 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 Warning: unaligning (T0547)S445 because last residue in template chain is (2dy3A)V361 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQY 2dy3A 25 :GPAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRELINIGF 2dy3A 75 :QEVLCWIWTPEQDFRAAI T0547 150 :GHNITLTIEGLNELEAIIDI 2dy3A 93 :DRNIDLAVISPAHAKALIET T0547 174 :FKPKPNIGLRVRLHSA 2dy3A 113 :DAEHIRVSIKIDSGLH T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIEVTG T0547 230 :IHFHL 2dy3A 155 :MFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEYSQFK 2dy3A 190 :ECPVNHVCNSPAFLTRSDL T0547 295 :YANDVV 2dy3A 209 :HMEMVR T0547 321 :SGRFVAA 2dy3A 215 :PGLAFYG T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKK 2dy3A 266 :GFVAVVPA T0547 354 :QNPKLIDEL 2dy3A 275 :YADGMPRHA T0547 363 :YDLYKSI 2dy3A 285 :GKFSVTI T0547 375 :LEYLHDSIDHLESILTLFDL 2dy3A 292 :DGLDYPQVGRVCMDQFVISL T0547 397 :VDLQ 2dy3A 312 :GDNP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNF 2dy3A 317 :GVEAGAKAVIFGENGHDATDFAERLDTINYEVVCRPTGRTVRAY Number of specific fragments extracted= 20 number of extra gaps= 0 total=11426 Will force an alignment to be made, even if fragment is small Number of alignments=511 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 Warning: unaligning (T0547)S445 because last residue in template chain is (2dy3A)V361 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQ 2dy3A 25 :GPAKLMAVVKANA T0547 90 :YPGFVKNLVKLGK 2dy3A 42 :VEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRELINIGF 2dy3A 75 :QEVLCWIWTPEQDFRAAI T0547 148 :EMGH 2dy3A 93 :DRNI T0547 154 :TLTIEGLNELEAIID 2dy3A 97 :DLAVISPAHAKALIE T0547 173 :RFKPKPNIGLRVRLHSA 2dy3A 112 :TDAEHIRVSIKIDSGLH T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIEVTG T0547 230 :IHFHL 2dy3A 155 :MFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEYSQF 2dy3A 190 :ECPVNHVCNSPAFLTRSD T0547 283 :KNEK 2dy3A 214 :RPGL T0547 308 :EQKKD 2dy3A 218 :AFYGL T0547 316 :DIFIESGRFVA 2dy3A 223 :EPVAGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKK 2dy3A 266 :GFVAVVPA T0547 354 :QNPKLIDELY 2dy3A 275 :YADGMPRHAQ T0547 366 :YKSIKPSNA 2dy3A 285 :GKFSVTIDG T0547 377 :YLHDSIDHLESILTLFDLG 2dy3A 294 :LDYPQVGRVCMDQFVISLG T0547 398 :DLQ 2dy3A 313 :DNP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNF 2dy3A 317 :GVEAGAKAVIFGENGHDATDFAERLDTINYEVVCRPTGRTVRAY Number of specific fragments extracted= 22 number of extra gaps= 0 total=11448 Will force an alignment to be made, even if fragment is small Number of alignments=512 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 Warning: unaligning (T0547)S445 because last residue in template chain is (2dy3A)V361 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKV 2dy3A 25 :GPAKLMAVVKA T0547 88 :NQYPGFVKNLVKLGK 2dy3A 40 :HGVEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGF 2dy3A 75 :QEVLCWIW T0547 135 :K 2dy3A 84 :P T0547 140 :INIGF 2dy3A 88 :FRAAI T0547 148 :EMGH 2dy3A 93 :DRNI T0547 153 :I 2dy3A 97 :D T0547 155 :LTIEGLNELEAIID 2dy3A 98 :LAVISPAHAKALIE T0547 173 :RFKPKPNIGLRVRLHSA 2dy3A 112 :TDAEHIRVSIKIDSGLH T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIEVTG T0547 230 :IHFHL 2dy3A 155 :MFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLG 2dy3A 190 :ECPVNHVC T0547 291 :TLREYA 2dy3A 198 :NSPAFL T0547 306 :IAEQKK 2dy3A 204 :TRSDLH T0547 315 :PDI 2dy3A 210 :MEM T0547 319 :IESGRFVAA 2dy3A 213 :VRPGLAFYG T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKK 2dy3A 266 :GFVAVVPA T0547 354 :QNPKLIDEL 2dy3A 275 :YADGMPRHA T0547 372 :SNALE 2dy3A 284 :QGKFS T0547 377 :YLHDSIDHLESILTLFDL 2dy3A 294 :LDYPQVGRVCMDQFVISL T0547 398 :DLQ 2dy3A 313 :DNP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNF 2dy3A 317 :GVEAGAKAVIFGENGHDATDFAERLDTINYEVVCRPTGRTVRAY Number of specific fragments extracted= 26 number of extra gaps= 0 total=11474 Will force an alignment to be made, even if fragment is small Number of alignments=513 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 Warning: unaligning (T0547)S445 because last residue in template chain is (2dy3A)V361 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQY 2dy3A 25 :GPAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRELINIGF 2dy3A 75 :QEVLCWIWTPEQDFRAAI T0547 148 :EMGH 2dy3A 93 :DRNI T0547 154 :TLTIEGLNELEAIID 2dy3A 97 :DLAVISPAHAKALIE T0547 173 :RFKPKPNIGLRVR 2dy3A 112 :TDAEHIRVSIKID T0547 188 :SAGV 2dy3A 125 :SGLH T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIEVTG T0547 230 :IHFHL 2dy3A 155 :MFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRNYTL 2dy3A 190 :ECPVNHVCNSPAFLTRSDLHMEMVRPGL T0547 308 :EQKKDLE 2dy3A 218 :AFYGLEP T0547 318 :FIESGRFVA 2dy3A 225 :VAGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKK 2dy3A 266 :GFVAVVPA T0547 354 :QNPKLIDEL 2dy3A 275 :YADGMPRHA T0547 372 :SNALE 2dy3A 284 :QGKFS T0547 377 :YLHDSIDHLESILTLFDLG 2dy3A 294 :LDYPQVGRVCMDQFVISLG T0547 398 :DLQ 2dy3A 313 :DNP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNF 2dy3A 317 :GVEAGAKAVIFGENGHDATDFAERLDTINYEVVCRPTGRTVRAY Number of specific fragments extracted= 22 number of extra gaps= 0 total=11496 Will force an alignment to be made, even if fragment is small Number of alignments=514 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 50 :RFPHLIQKQIENIYGNF 2dy3A 8 :IDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQYPG 2dy3A 25 :GPAKLMAVVKANAYNH T0547 93 :FVKNLVKLGK 2dy3A 45 :VAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2dy3A 55 :DAFGVATLAEAMQLRDIGISQEVLCW T0547 135 :KDRELINIGF 2dy3A 83 :TPEQDFRAAI T0547 148 :EMGHNIT 2dy3A 93 :DRNIDLA T0547 156 :TI 2dy3A 100 :VI T0547 159 :GLNELEAIIDIAKE 2dy3A 102 :SPAHAKALIETDAE T0547 177 :KPNIGLRV 2dy3A 116 :HIRVSIKI T0547 187 :HSAGV 2dy3A 124 :DSGLH T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIEVTG T0547 230 :IHFHL 2dy3A 155 :MFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NL 2dy3A 190 :EC T0547 276 :AVEYSQFKNEKS 2dy3A 192 :PVNHVCNSPAFL T0547 291 :TLREY 2dy3A 204 :TRSDL T0547 296 :ANDVVFILKNI 2dy3A 210 :MEMVRPGLAFY T0547 311 :KD 2dy3A 221 :GL T0547 314 :EPDIFIESG 2dy3A 223 :EPVAGLEHG T0547 326 :AANHAVLIAPVLELFSQ 2dy3A 232 :LKPAMTWEAKVSVVKQI T0547 346 :ENKLILKK 2dy3A 266 :GFVAVVPA T0547 354 :QNPKLIDELYDLYK 2dy3A 275 :YADGMPRHAQGKFS T0547 372 :SNALEYLHDSIDHLE 2dy3A 289 :VTIDGLDYPQVGRVC T0547 389 :LTLFDLGYVDLQ 2dy3A 304 :MDQFVISLGDNP T0547 401 :DRSNAEILTHLI 2dy3A 317 :GVEAGAKAVIFG Number of specific fragments extracted= 25 number of extra gaps= 0 total=11521 Will force an alignment to be made, even if fragment is small Number of alignments=515 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 Warning: unaligning (T0547)S445 because last residue in template chain is (2dy3A)V361 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQY 2dy3A 25 :GPAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRELINIGF 2dy3A 75 :QEVLCWIWTPEQDFRAAI T0547 148 :EMGH 2dy3A 93 :DRNI T0547 154 :TLTIEGLNELEAII 2dy3A 97 :DLAVISPAHAKALI T0547 174 :FKPKPNIGLRVRLH 2dy3A 113 :DAEHIRVSIKIDSG T0547 190 :GV 2dy3A 127 :LH T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIEVTG T0547 230 :IHFHL 2dy3A 155 :MFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRNY 2dy3A 190 :ECPVNHVCNSPAFLTRSDLHMEMVRP T0547 306 :IAEQKKD 2dy3A 216 :GLAFYGL T0547 316 :DIFIESGRFVA 2dy3A 223 :EPVAGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKK 2dy3A 266 :GFVAVVPA T0547 354 :QNPKLIDEL 2dy3A 275 :YADGMPRHA T0547 366 :YKSIKPSNA 2dy3A 285 :GKFSVTIDG T0547 377 :YLHDSIDHLESILTL 2dy3A 294 :LDYPQVGRVCMDQFV T0547 394 :LGYVDLQ 2dy3A 309 :ISLGDNP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNF 2dy3A 317 :GVEAGAKAVIFGENGHDATDFAERLDTINYEVVCRPTGRTVRAY Number of specific fragments extracted= 22 number of extra gaps= 0 total=11543 Will force an alignment to be made, even if fragment is small Number of alignments=516 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQY 2dy3A 25 :GPAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRELINIGF 2dy3A 75 :QEVLCWIWTPEQDFRAAI T0547 150 :GHNITLTIEGLNELEAIIDI 2dy3A 93 :DRNIDLAVISPAHAKALIET T0547 174 :FKPKPNIGLRVRLHSA 2dy3A 113 :DAEHIRVSIKIDSGLH T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIEVTG T0547 230 :IHFHL 2dy3A 155 :MFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEYSQFK 2dy3A 190 :ECPVNHVCNSPAFLTRSDL T0547 295 :YANDVV 2dy3A 209 :HMEMVR T0547 321 :SGRFVAA 2dy3A 215 :PGLAFYG T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKK 2dy3A 266 :GFVAVVPA T0547 354 :QNPKLIDEL 2dy3A 275 :YADGMPRHA T0547 363 :YDLYKSI 2dy3A 285 :GKFSVTI T0547 375 :LEYLHDSIDHLESILTLFDL 2dy3A 292 :DGLDYPQVGRVCMDQFVISL T0547 397 :VDLQ 2dy3A 312 :GDNP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLV 2dy3A 317 :GVEAGAKAVIFGENGHDATDFAERLDTINYEVVCRPTGRTVR Number of specific fragments extracted= 20 number of extra gaps= 0 total=11563 Will force an alignment to be made, even if fragment is small Number of alignments=517 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 Warning: unaligning (T0547)S445 because last residue in template chain is (2dy3A)V361 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQ 2dy3A 25 :GPAKLMAVVKANA T0547 90 :YPGFVKNLVKLGK 2dy3A 42 :VEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRELINIGF 2dy3A 75 :QEVLCWIWTPEQDFRAAI T0547 148 :EMGH 2dy3A 93 :DRNI T0547 154 :TLTIEGLNELEAIID 2dy3A 97 :DLAVISPAHAKALIE T0547 173 :RFKPKPNIGLRVRLHSA 2dy3A 112 :TDAEHIRVSIKIDSGLH T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIEVTG T0547 230 :IHFHL 2dy3A 155 :MFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEYSQF 2dy3A 190 :ECPVNHVCNSPAFLTRSD T0547 283 :KNEK 2dy3A 214 :RPGL T0547 308 :EQKKD 2dy3A 218 :AFYGL T0547 316 :DIFIESGRFVA 2dy3A 223 :EPVAGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKK 2dy3A 266 :GFVAVVPA T0547 354 :QNPKLIDELY 2dy3A 275 :YADGMPRHAQ T0547 366 :YKSIKPSNA 2dy3A 285 :GKFSVTIDG T0547 377 :YLHDSIDHLESILTLFDLG 2dy3A 294 :LDYPQVGRVCMDQFVISLG T0547 398 :DLQ 2dy3A 313 :DNP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNF 2dy3A 317 :GVEAGAKAVIFGENGHDATDFAERLDTINYEVVCRPTGRTVRAY Number of specific fragments extracted= 22 number of extra gaps= 0 total=11585 Will force an alignment to be made, even if fragment is small Number of alignments=518 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKV 2dy3A 25 :GPAKLMAVVKA T0547 88 :NQYPGFVKNLVKLGK 2dy3A 40 :HGVEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGF 2dy3A 75 :QEVLCWIW T0547 135 :K 2dy3A 84 :P T0547 140 :INIGF 2dy3A 88 :FRAAI T0547 148 :EMGH 2dy3A 93 :DRNI T0547 153 :I 2dy3A 97 :D T0547 155 :LTIEGLNELEAIID 2dy3A 98 :LAVISPAHAKALIE T0547 173 :RFKPKPNIGLRVRLHSA 2dy3A 112 :TDAEHIRVSIKIDSGLH T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIEVTG T0547 230 :IHFHL 2dy3A 155 :MFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLG 2dy3A 190 :ECPVNHVC T0547 291 :TLREYA 2dy3A 198 :NSPAFL T0547 306 :IAEQKK 2dy3A 204 :TRSDLH T0547 315 :PDI 2dy3A 210 :MEM T0547 319 :IESGRFVAA 2dy3A 213 :VRPGLAFYG T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKK 2dy3A 266 :GFVAVVPA T0547 354 :QNPKLIDEL 2dy3A 275 :YADGMPRHA T0547 372 :SNALE 2dy3A 284 :QGKFS T0547 377 :YLHDSIDHLESILTLFDL 2dy3A 294 :LDYPQVGRVCMDQFVISL T0547 398 :DLQ 2dy3A 313 :DNP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERY 2dy3A 317 :GVEAGAKAVIFGENGHDATDFAERLDTINYEVVCRPTGRT Number of specific fragments extracted= 26 number of extra gaps= 0 total=11611 Will force an alignment to be made, even if fragment is small Number of alignments=519 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVNQY 2dy3A 25 :GPAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2dy3A 55 :DAFGVATLAEAMQLRDIGIS T0547 127 :APITVNGFKDRELINIGF 2dy3A 75 :QEVLCWIWTPEQDFRAAI T0547 148 :EMGH 2dy3A 93 :DRNI T0547 154 :TLTIEGLNELEAIID 2dy3A 97 :DLAVISPAHAKALIE T0547 173 :RFKPKPNIGLRVR 2dy3A 112 :TDAEHIRVSIKID T0547 188 :SAGV 2dy3A 125 :SGLH T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2dy3A 129 :RSGVDEQEWEGVFSALAAAPHIEVTG T0547 230 :IHFHL 2dy3A 155 :MFTHL T0547 244 :LKKALNEAGNIYTELRKMGA 2dy3A 170 :TDRQIIAFRRALALARKHGL T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRNYTL 2dy3A 190 :ECPVNHVCNSPAFLTRSDLHMEMVRPGL T0547 308 :EQKKDLE 2dy3A 218 :AFYGLEP T0547 318 :FIESGRFVA 2dy3A 225 :VAGLEHGLK T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 346 :ENKLILKK 2dy3A 266 :GFVAVVPA T0547 354 :QNPKLIDEL 2dy3A 275 :YADGMPRHA T0547 372 :SNALE 2dy3A 284 :QGKFS T0547 377 :YLHDSIDHLESILTLFDLG 2dy3A 294 :LDYPQVGRVCMDQFVISLG T0547 398 :DLQ 2dy3A 313 :DNP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLV 2dy3A 317 :GVEAGAKAVIFGENGHDATDFAERLDTINYEVVCRPTGRTVR Number of specific fragments extracted= 22 number of extra gaps= 0 total=11633 Will force an alignment to be made, even if fragment is small Number of alignments=520 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)D364 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMAG T0547 78 :GFNAVYPLKVNQYPG 2dy3A 26 :PAKLMAVVKANAYNH T0547 93 :FVKNLVKLGK 2dy3A 45 :VAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2dy3A 55 :DAFGVATLAEAMQLRDIGISQEVLCW T0547 134 :FKDRELINIGFIAAEMG 2dy3A 81 :IWTPEQDFRAAIDRNID T0547 154 :TLTIEGLNELEAIIDIAKE 2dy3A 98 :LAVISPAHAKALIETDAEH T0547 182 :LRVRLHSAGVG 2dy3A 117 :IRVSIKIDSGL T0547 202 :SKFGLTSTELIEAVNLLKENK 2dy3A 128 :HRSGVDEQEWEGVFSALAAAP T0547 224 :LEQFTMIHFHL 2dy3A 149 :HIEVTGMFTHL T0547 245 :KKALNEAGNIYTELRKMGAKNL 2dy3A 170 :TDRQIIAFRRALALARKHGLEC T0547 276 :AVEYSQ 2dy3A 192 :PVNHVC T0547 282 :FKNEKSR 2dy3A 199 :SPAFLTR T0547 296 :ANDVVFILK 2dy3A 206 :SDLHMEMVR T0547 306 :IAEQKKDLEPDIFIESG 2dy3A 215 :PGLAFYGLEPVAGLEHG T0547 326 :AANHAVLIAPVLELFSQ 2dy3A 232 :LKPAMTWEAKVSVVKQI T0547 365 :LYKSIKPS 2dy3A 266 :GFVAVVPA T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2dy3A 275 :YADGMPRHAQGKFSVTIDGLDYPQVGRVCM T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2dy3A 309 :ISLGDNPHGVEAGAKAVIFGENGHDATDFAERL T0547 561 :EDLDYDIHAI 2dy3A 342 :DTINYEVVCR T0547 602 :DNGYLKSIGV 2dy3A 352 :PTGRTVRAYV Number of specific fragments extracted= 20 number of extra gaps= 0 total=11653 Will force an alignment to be made, even if fragment is small Number of alignments=521 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)N24 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)I350 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)Y366 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 25 :YEKK 2dy3A 2 :NLLT T0547 48 :LLRFPHLIQKQIENIYGNF 2dy3A 6 :TKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVN 2dy3A 25 :GPAKLMAVVKAN T0547 90 :YPGFVKNLVKLGK 2dy3A 42 :VEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 2dy3A 55 :DAFGVATLAEAMQLRDIGISQEVLCWIWTPEQ T0547 141 :NIGFIAAEM 2dy3A 88 :FRAAIDRNI T0547 154 :TLTIEGLNELEAII 2dy3A 97 :DLAVISPAHAKALI T0547 174 :FKPKPNIGLRVRLHSA 2dy3A 113 :DAEHIRVSIKIDSGLH T0547 203 :KFGLTSTELIEAVNLLKENK 2dy3A 129 :RSGVDEQEWEGVFSALAAAP T0547 224 :LEQFTMIHFHL 2dy3A 149 :HIEVTGMFTHL T0547 245 :KKALNEAGNIYTELRKMGAKNLKAINL 2dy3A 170 :TDRQIIAFRRALALARKHGLECPVNHV T0547 286 :K 2dy3A 198 :N T0547 301 :FILKNIAEQKKDLEPD 2dy3A 199 :SPAFLTRSDLHMEMVR T0547 321 :SGRFVAANHAVLIAPVLELFSQEYAENKL 2dy3A 220 :YGLEPVAGLEHGLKPAMTWEAKVSVVKQI T0547 367 :KSIKPS 2dy3A 266 :GFVAVV T0547 373 :NALEYLHDSIDHLESILT 2dy3A 274 :GYADGMPRHAQGKFSVTI T0547 426 :PAD 2dy3A 292 :DGL T0547 462 :IMPLDRLDEEPTRSASIWDI 2dy3A 295 :DYPQVGRVCMDQFVISLGDN T0547 500 :HDVDVEKENYFLGF 2dy3A 315 :PHGVEAGAKAVIFG T0547 551 :IEAQSILDTLEDLDYDIHAI 2dy3A 329 :ENGHDATDFAERLDTINYEV T0547 599 :FLNDNGYLKSIGV 2dy3A 349 :VCRPTGRTVRAYV Number of specific fragments extracted= 21 number of extra gaps= 0 total=11674 Will force an alignment to be made, even if fragment is small Number of alignments=522 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)K44 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)Q281 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E386 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 45 :GPLLL 2dy3A 2 :NLLTT T0547 50 :RFPHLIQKQIENIYGNFN 2dy3A 8 :IDLDAIAHNTRVLKQMAG T0547 78 :GFNAVYPLKVNQY 2dy3A 26 :PAKLMAVVKANAY T0547 91 :PGFVKNLVKLG 2dy3A 43 :EKVAPVIAAHG T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITVNGF 2dy3A 54 :ADAFGVATLAEAMQLRDIGISQEVLCWIWT T0547 137 :RELINIGFIAAEM 2dy3A 84 :PEQDFRAAIDRNI T0547 154 :TLTIEGLNELEAIIDI 2dy3A 97 :DLAVISPAHAKALIET T0547 174 :FKPKPNIGLRVRLHS 2dy3A 113 :DAEHIRVSIKIDSGL T0547 202 :SKFGLTSTELIEAVNLLKENK 2dy3A 128 :HRSGVDEQEWEGVFSALAAAP T0547 224 :LEQFTMIHFHL 2dy3A 149 :HIEVTGMFTHL T0547 282 :FKNEKSR 2dy3A 170 :TDRQIIA T0547 296 :ANDVVFILKNI 2dy3A 177 :FRRALALARKH T0547 312 :DLEPDIF 2dy3A 188 :GLECPVN T0547 324 :FVAANHAVLIAP 2dy3A 195 :HVCNSPAFLTRS T0547 344 :YAENKLILKKQ 2dy3A 207 :DLHMEMVRPGL T0547 361 :ELYDLYKSIKPS 2dy3A 218 :AFYGLEPVAGLE T0547 387 :SILTLFDLGYVDLQDR 2dy3A 266 :GFVAVVPAGYADGMPR T0547 403 :SNAEILTHL 2dy3A 283 :AQGKFSVTI T0547 426 :PADLLAIQDEVQERYLVN 2dy3A 292 :DGLDYPQVGRVCMDQFVI T0547 446 :LFQSMPD 2dy3A 310 :SLGDNPH T0547 502 :VDVEKENYFLGF 2dy3A 317 :GVEAGAKAVIFG T0547 544 :G 2dy3A 330 :N T0547 545 :YEVEGIIE 2dy3A 332 :HDATDFAE T0547 553 :AQSILDTLEDLDY 2dy3A 342 :DTINYEVVCRPTG T0547 602 :D 2dy3A 355 :R T0547 606 :LKSIGV 2dy3A 356 :TVRAYV Number of specific fragments extracted= 26 number of extra gaps= 0 total=11700 Will force an alignment to be made, even if fragment is small Number of alignments=523 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)K44 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)D393 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)E457 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 45 :GPLLL 2dy3A 2 :NLLTT T0547 50 :RFPHLIQKQIENIYGNFN 2dy3A 8 :IDLDAIAHNTRVLKQMAG T0547 78 :GFNAVYPLKVN 2dy3A 26 :PAKLMAVVKAN T0547 89 :QYPGFVKNLVKLGK 2dy3A 41 :GVEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 2dy3A 55 :DAFGVATLAEAMQLRDIGISQEVLCWIWTPE T0547 139 :LINIGFIAAEM 2dy3A 86 :QDFRAAIDRNI T0547 154 :TLTIEGLNELEAIIDI 2dy3A 97 :DLAVISPAHAKALIET T0547 174 :FKPKPNIGLRVRLHS 2dy3A 113 :DAEHIRVSIKIDSGL T0547 202 :SKFGLTSTELIEAVNLLKENK 2dy3A 128 :HRSGVDEQEWEGVFSALAAAP T0547 224 :LEQFTMIHFHL 2dy3A 149 :HIEVTGMFTHL T0547 245 :KKALNEAGNIYTELRKM 2dy3A 170 :TDRQIIAFRRALALARK T0547 310 :KKDLEPDI 2dy3A 187 :HGLECPVN T0547 324 :FVAANHAVLIA 2dy3A 195 :HVCNSPAFLTR T0547 343 :EYAENKLILKK 2dy3A 206 :SDLHMEMVRPG T0547 360 :DELYDLYKSIKPS 2dy3A 217 :LAFYGLEPVAGLE T0547 378 :LHDSIDHLESILTLF 2dy3A 234 :PAMTWEAKVSVVKQI T0547 458 :QNFPIMPLDR 2dy3A 266 :GFVAVVPAGY T0547 485 :SDGEISYSKDKP 2dy3A 276 :ADGMPRHAQGKF T0547 501 :DVDVEKENYFL 2dy3A 288 :SVTIDGLDYPQ T0547 512 :GF 2dy3A 300 :GR T0547 532 :HPTEAIISINE 2dy3A 303 :CMDQFVISLGD T0547 543 :KGYEVEGIIEAQ 2dy3A 320 :AGAKAVIFGENG T0547 555 :SILDTLEDLDYDIHAIMD 2dy3A 333 :DATDFAERLDTINYEVVC T0547 601 :NDNGYLKSIGV 2dy3A 351 :RPTGRTVRAYV Number of specific fragments extracted= 24 number of extra gaps= 0 total=11724 Will force an alignment to be made, even if fragment is small Number of alignments=524 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)E240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)P371 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMAG T0547 78 :GFNAVYPLKVNQY 2dy3A 26 :PAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 2dy3A 55 :DAFGVATLAEAMQLRDIGISQEVLCWIWTPE T0547 141 :NIGFIAAEM 2dy3A 88 :FRAAIDRNI T0547 154 :TLTIEGLNELEAIID 2dy3A 97 :DLAVISPAHAKALIE T0547 173 :RFKPKPNIGLRVRLHSA 2dy3A 112 :TDAEHIRVSIKIDSGLH T0547 203 :KFGLTSTELIEAVNLLKENK 2dy3A 129 :RSGVDEQEWEGVFSALAAAP T0547 224 :LEQFTMIHFHL 2dy3A 149 :HIEVTGMFTHL T0547 241 :IHPLKKALNEAGN 2dy3A 170 :TDRQIIAFRRALA T0547 257 :ELRKM 2dy3A 183 :LARKH T0547 263 :AKNL 2dy3A 188 :GLEC T0547 285 :EKSRNYTLREYA 2dy3A 192 :PVNHVCNSPAFL T0547 309 :QKKDLEPDIFI 2dy3A 204 :TRSDLHMEMVR T0547 321 :SGRFVAA 2dy3A 215 :PGLAFYG T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 397 :VDLQDRSNAEILTHL 2dy3A 277 :DGMPRHAQGKFSVTI T0547 438 :ERYLVNFSLFQSMPD 2dy3A 292 :DGLDYPQVGRVCMDQ T0547 536 :AIISINE 2dy3A 307 :FVISLGD T0547 543 :KGYEVEGIIEAQ 2dy3A 320 :AGAKAVIFGENG T0547 555 :SILDTLEDLDYDIHAI 2dy3A 333 :DATDFAERLDTINYEV T0547 599 :FLNDNGYLKSIGV 2dy3A 349 :VCRPTGRTVRAYV Number of specific fragments extracted= 22 number of extra gaps= 0 total=11746 Will force an alignment to be made, even if fragment is small Number of alignments=525 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (2dy3A)M1 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)P451 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMAG T0547 78 :GFNAVYPLKVNQ 2dy3A 26 :PAKLMAVVKANA T0547 90 :YPGFVKNLVKLGK 2dy3A 42 :VEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 2dy3A 55 :DAFGVATLAEAMQLRDIGISQEVLCWIWTPE T0547 141 :NIGFIAAEM 2dy3A 88 :FRAAIDRNI T0547 154 :TLTIEGLNELEAI 2dy3A 97 :DLAVISPAHAKAL T0547 170 :AKE 2dy3A 110 :IET T0547 174 :FKPKPNIGLRVRLHS 2dy3A 113 :DAEHIRVSIKIDSGL T0547 202 :SKFGLTSTELIEAVNLLKENK 2dy3A 128 :HRSGVDEQEWEGVFSALAAAP T0547 224 :LEQFTMIHFHL 2dy3A 149 :HIEVTGMFTHL T0547 245 :KKALNEAGNIYTELRKMG 2dy3A 170 :TDRQIIAFRRALALARKH T0547 311 :KDLEPD 2dy3A 188 :GLECPV T0547 369 :IKPSNALEYLHDS 2dy3A 194 :NHVCNSPAFLTRS T0547 389 :LTLFDLGYVDLQ 2dy3A 207 :DLHMEMVRPGLA T0547 416 :AILLLGDKQNPADLLAI 2dy3A 219 :FYGLEPVAGLEHGLKPA T0547 438 :ERYLVNFSLFQSM 2dy3A 236 :MTWEAKVSVVKQI T0547 473 :TRSAS 2dy3A 266 :GFVAV T0547 491 :YSKDKPLFLHDVDVEKENYFL 2dy3A 271 :VPAGYADGMPRHAQGKFSVTI T0547 528 :NLFT 2dy3A 297 :PQVG T0547 532 :HPTEAIISINE 2dy3A 303 :CMDQFVISLGD T0547 543 :KGYEVEGIIEAQSILDTLEDLDYDIHAIMD 2dy3A 321 :GAKAVIFGENGHDATDFAERLDTINYEVVC T0547 601 :NDNGYLKSIGV 2dy3A 351 :RPTGRTVRAYV Number of specific fragments extracted= 22 number of extra gaps= 0 total=11768 Will force an alignment to be made, even if fragment is small Number of alignments=526 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 T0547 50 :RFPHLIQKQIENIYGNFN 2dy3A 8 :IDLDAIAHNTRVLKQMAG T0547 78 :GFNAVYPLKVNQYPG 2dy3A 26 :PAKLMAVVKANAYNH T0547 93 :FVKNLVKLGK 2dy3A 45 :VAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2dy3A 55 :DAFGVATLAEAMQLRDIGISQEVLCW T0547 134 :FKDRELINIGFIAAEMG 2dy3A 81 :IWTPEQDFRAAIDRNID T0547 154 :TLTIEGLNELEAIIDIAKE 2dy3A 98 :LAVISPAHAKALIETDAEH T0547 182 :LRVRLHSAGVG 2dy3A 117 :IRVSIKIDSGL T0547 202 :SKFGLTSTELIEAVNLLKENK 2dy3A 128 :HRSGVDEQEWEGVFSALAAAP T0547 224 :LEQFTMIHFHL 2dy3A 149 :HIEVTGMFTHL T0547 245 :KKALNEAGNIYTELRKMGAKN 2dy3A 170 :TDRQIIAFRRALALARKHGLE Number of specific fragments extracted= 10 number of extra gaps= 0 total=11778 Will force an alignment to be made, even if fragment is small Number of alignments=527 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)I350 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)Y366 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 48 :LLRFPHLIQKQIENIYGNF 2dy3A 6 :TKIDLDAIAHNTRVLKQMA T0547 77 :GGFNAVYPLKVN 2dy3A 25 :GPAKLMAVVKAN T0547 90 :YPGFVKNLVKLGK 2dy3A 42 :VEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 2dy3A 55 :DAFGVATLAEAMQLRDIGISQEVLCWIWTPEQ T0547 141 :NIGFIAAEM 2dy3A 88 :FRAAIDRNI T0547 154 :TLTIEGLNELEAII 2dy3A 97 :DLAVISPAHAKALI T0547 174 :FKPKPNIGLRVRLHSA 2dy3A 113 :DAEHIRVSIKIDSGLH T0547 203 :KFGLTSTELIEAVNLLKENK 2dy3A 129 :RSGVDEQEWEGVFSALAAAP T0547 224 :LEQFTMIHFHL 2dy3A 149 :HIEVTGMFTHL T0547 245 :KKALNEAGNIYTELRKMGAKNLKAINL 2dy3A 170 :TDRQIIAFRRALALARKHGLECPVNHV T0547 286 :K 2dy3A 198 :N T0547 301 :FILKNIAEQKKDLEPD 2dy3A 199 :SPAFLTRSDLHMEMVR T0547 321 :SGRFVAANHAVLIAPVLELFSQEYAENKL 2dy3A 220 :YGLEPVAGLEHGLKPAMTWEAKVSVVKQI T0547 367 :KSIKPS 2dy3A 266 :GFVAVV T0547 373 :NALEYLHDSIDHLESILT 2dy3A 274 :GYADGMPRHAQGKFSVTI T0547 426 :PAD 2dy3A 292 :DGL T0547 462 :IMPLDRLDEEPTRSASIWDI 2dy3A 295 :DYPQVGRVCMDQFVISLGDN T0547 500 :HDVDVEKENYFLGF 2dy3A 315 :PHGVEAGAKAVIFG T0547 551 :IEAQSILDTLEDLDYDIHAIM 2dy3A 329 :ENGHDATDFAERLDTINYEVV Number of specific fragments extracted= 19 number of extra gaps= 0 total=11797 Will force an alignment to be made, even if fragment is small Number of alignments=528 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)Q281 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E386 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 50 :RFPHLIQKQIENIYGNFN 2dy3A 8 :IDLDAIAHNTRVLKQMAG T0547 78 :GFNAVYPLKVNQY 2dy3A 26 :PAKLMAVVKANAY T0547 91 :PGFVKNLVKLG 2dy3A 43 :EKVAPVIAAHG T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITVNGF 2dy3A 54 :ADAFGVATLAEAMQLRDIGISQEVLCWIWT T0547 137 :RELINIGFIAAEM 2dy3A 84 :PEQDFRAAIDRNI T0547 154 :TLTIEGLNELEAIIDI 2dy3A 97 :DLAVISPAHAKALIET T0547 174 :FKPKPNIGLRVRLHS 2dy3A 113 :DAEHIRVSIKIDSGL T0547 202 :SKFGLTSTELIEAVNLLKENK 2dy3A 128 :HRSGVDEQEWEGVFSALAAAP T0547 224 :LEQFTMIHFHL 2dy3A 149 :HIEVTGMFTHL T0547 282 :FKNEKSR 2dy3A 170 :TDRQIIA T0547 296 :ANDVVFILKNI 2dy3A 177 :FRRALALARKH T0547 312 :DLEPDIF 2dy3A 188 :GLECPVN T0547 324 :FVAANHAVLIAP 2dy3A 195 :HVCNSPAFLTRS T0547 344 :YAENKLILKKQ 2dy3A 207 :DLHMEMVRPGL T0547 361 :ELYDLYKSIKPS 2dy3A 218 :AFYGLEPVAGLE T0547 387 :SILTLFDLGYVDLQDR 2dy3A 266 :GFVAVVPAGYADGMPR T0547 403 :SNAEILTHL 2dy3A 283 :AQGKFSVTI T0547 426 :PADLLAIQDEVQERYLVN 2dy3A 292 :DGLDYPQVGRVCMDQFVI T0547 446 :LFQSMPD 2dy3A 310 :SLGDNPH T0547 502 :VDVEKENYFLGF 2dy3A 317 :GVEAGAKAVIFG Number of specific fragments extracted= 20 number of extra gaps= 0 total=11817 Will force an alignment to be made, even if fragment is small Number of alignments=529 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)D393 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)E457 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 50 :RFPHLIQKQIENIYGNFN 2dy3A 8 :IDLDAIAHNTRVLKQMAG T0547 78 :GFNAVYPLKVN 2dy3A 26 :PAKLMAVVKAN T0547 89 :QYPGFVKNLVKLGK 2dy3A 41 :GVEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 2dy3A 55 :DAFGVATLAEAMQLRDIGISQEVLCWIWTPE T0547 139 :LINIGFIAAEM 2dy3A 86 :QDFRAAIDRNI T0547 154 :TLTIEGLNELEAIIDI 2dy3A 97 :DLAVISPAHAKALIET T0547 174 :FKPKPNIGLRVRLHS 2dy3A 113 :DAEHIRVSIKIDSGL T0547 202 :SKFGLTSTELIEAVNLLKENK 2dy3A 128 :HRSGVDEQEWEGVFSALAAAP T0547 224 :LEQFTMIHFHL 2dy3A 149 :HIEVTGMFTHL T0547 245 :KKALNEAGNIYTELRKM 2dy3A 170 :TDRQIIAFRRALALARK T0547 310 :KKDLEPDI 2dy3A 187 :HGLECPVN T0547 324 :FVAANHAVLIA 2dy3A 195 :HVCNSPAFLTR T0547 343 :EYAENKLILKK 2dy3A 206 :SDLHMEMVRPG T0547 360 :DELYDLYKSIKPS 2dy3A 217 :LAFYGLEPVAGLE T0547 378 :LHDSIDHLESILTLF 2dy3A 234 :PAMTWEAKVSVVKQI T0547 458 :QNFPIMPLDR 2dy3A 266 :GFVAVVPAGY T0547 485 :SDGEISYSKDKP 2dy3A 276 :ADGMPRHAQGKF T0547 501 :DVDVEKENYFL 2dy3A 288 :SVTIDGLDYPQ T0547 512 :GF 2dy3A 300 :GR T0547 532 :HPTEAIISINE 2dy3A 303 :CMDQFVISLGD T0547 543 :KGYEVEGIIEAQ 2dy3A 320 :AGAKAVIFGENG T0547 555 :SILDTLEDLDYDIHAIMD 2dy3A 333 :DATDFAERLDTINYEVVC Number of specific fragments extracted= 22 number of extra gaps= 0 total=11839 Will force an alignment to be made, even if fragment is small Number of alignments=530 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)E240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)P371 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 45 :GPLLLRFPHLIQKQIENIYGNFN 2dy3A 3 :LLTTKIDLDAIAHNTRVLKQMAG T0547 78 :GFNAVYPLKVNQY 2dy3A 26 :PAKLMAVVKANAY T0547 91 :PGFVKNLVKLGK 2dy3A 43 :EKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 2dy3A 55 :DAFGVATLAEAMQLRDIGISQEVLCWIWTPE T0547 141 :NIGFIAAEM 2dy3A 88 :FRAAIDRNI T0547 154 :TLTIEGLNELEAIID 2dy3A 97 :DLAVISPAHAKALIE T0547 173 :RFKPKPNIGLRVRLHSA 2dy3A 112 :TDAEHIRVSIKIDSGLH T0547 203 :KFGLTSTELIEAVNLLKENK 2dy3A 129 :RSGVDEQEWEGVFSALAAAP T0547 224 :LEQFTMIHFHL 2dy3A 149 :HIEVTGMFTHL T0547 241 :IHPLKKALNEAGN 2dy3A 170 :TDRQIIAFRRALA T0547 257 :ELRKM 2dy3A 183 :LARKH T0547 263 :AKNL 2dy3A 188 :GLEC T0547 285 :EKSRNYTLREYA 2dy3A 192 :PVNHVCNSPAFL T0547 309 :QKKDLEPDIFI 2dy3A 204 :TRSDLHMEMVR T0547 321 :SGRFVAA 2dy3A 215 :PGLAFYG T0547 328 :NHAVLIAPVLELFSQ 2dy3A 234 :PAMTWEAKVSVVKQI T0547 397 :VDLQDRSNAEILTHL 2dy3A 277 :DGMPRHAQGKFSVTI T0547 438 :ERYLVNFSLFQSMPD 2dy3A 292 :DGLDYPQVGRVCMDQ T0547 536 :AIISINE 2dy3A 307 :FVISLGD T0547 543 :KGYEVEGIIEAQ 2dy3A 320 :AGAKAVIFGENG T0547 555 :SILDTLEDLDYDIHAI 2dy3A 333 :DATDFAERLDTINYEV Number of specific fragments extracted= 21 number of extra gaps= 0 total=11860 Will force an alignment to be made, even if fragment is small Number of alignments=531 # 2dy3A read from all-align.a2m # found chain 2dy3A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2dy3A)E169 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2dy3A)E169 Warning: unaligning (T0547)P451 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2dy3A)R265 Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2dy3A)R265 T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 2dy3A 2 :NLLTTKIDLDAIAHNTRVLKQMAG T0547 78 :GFNAVYPLKVNQ 2dy3A 26 :PAKLMAVVKANA T0547 90 :YPGFVKNLVKLGK 2dy3A 42 :VEKVAPVIAAHGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 2dy3A 55 :DAFGVATLAEAMQLRDIGISQEVLCWIWTPE T0547 141 :NIGFIAAEM 2dy3A 88 :FRAAIDRNI T0547 154 :TLTIEGLNELEAI 2dy3A 97 :DLAVISPAHAKAL T0547 170 :AKE 2dy3A 110 :IET T0547 174 :FKPKPNIGLRVRLHS 2dy3A 113 :DAEHIRVSIKIDSGL T0547 202 :SKFGLTSTELIEAVNLLKENK 2dy3A 128 :HRSGVDEQEWEGVFSALAAAP T0547 224 :LEQFTMIHFHL 2dy3A 149 :HIEVTGMFTHL T0547 245 :KKALNEAGNIYTELRKMG 2dy3A 170 :TDRQIIAFRRALALARKH T0547 311 :KDLEPD 2dy3A 188 :GLECPV T0547 369 :IKPSNALEYLHDS 2dy3A 194 :NHVCNSPAFLTRS T0547 389 :LTLFDLGYVDLQ 2dy3A 207 :DLHMEMVRPGLA T0547 416 :AILLLGDKQNPADLLAI 2dy3A 219 :FYGLEPVAGLEHGLKPA T0547 438 :ERYLVNFSLFQSM 2dy3A 236 :MTWEAKVSVVKQI T0547 473 :TRSAS 2dy3A 266 :GFVAV T0547 491 :YSKDKPLFLHDVDVEKENYFL 2dy3A 271 :VPAGYADGMPRHAQGKFSVTI T0547 528 :NLFT 2dy3A 297 :PQVG T0547 532 :HPTEAIISINE 2dy3A 303 :CMDQFVISLGD T0547 543 :KGYEVEGIIEAQSILDTLEDLDYDIHAIMD 2dy3A 321 :GAKAVIFGENGHDATDFAERLDTINYEVVC Number of specific fragments extracted= 21 number of extra gaps= 0 total=11881 Will force an alignment to be made, even if fragment is small Number of alignments=532 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D452 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)T473 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)D564 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 T0547 28 :KPAIIDIVKEL 2j66A 5 :QAEITALTKRF T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 2j66A 16 :ETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFS T0547 133 :GFKDRELINIGF 2j66A 93 :PGKKRSELEIAV T0547 148 :EMGHNI 2j66A 105 :QSGIYC T0547 155 :LTIEGLNELEAIIDIAKER 2j66A 111 :IIAESVEELFYIEELAEKE T0547 175 :KPKPNIGLRVRL 2j66A 130 :NKTARVAIRINP T0547 188 :SA 2j66A 143 :KS T0547 193 :IW 2j66A 149 :AI T0547 196 :KSGGINSKFGLTSTELIEAVNLLKENKLLE 2j66A 151 :KMGGVPRQFGMDESMLDAVMDAVRSLQFTK T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2j66A 181 :FIGIHVYTGTQNLNTDSIIESMKYTVDLGRNI T0547 259 :RKMGA 2j66A 214 :ERYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 288 :RNYTLREYANDVVFILKNIAEQ 2j66A 238 :KALDIGKITRTVSDYVQEARDT T0547 311 :KD 2j66A 261 :FP T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYA 2j66A 263 :QTTFIIESGRYLLAQAAVYVTEVLYRKASKGE T0547 438 :ERYLVNFSLFQSMP 2j66A 295 :VFVIVDGGMHHHAA T0547 474 :RSASIWDITCDSDGEISYS 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 497 :LFLHDVDVEK 2j66A 356 :VHVPALYPGD T0547 510 :FLGFFLVGAYQEVLGM 2j66A 366 :LVCVLNSGAYGLSFSP T0547 526 :KHNLFTHPTEAIIS 2j66A 383 :HFLGHPTPIEILKR T0547 544 :GYEVEGIIEAQSILDTLEDL 2j66A 397 :NGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 23 number of extra gaps= 1 total=11904 Will force an alignment to be made, even if fragment is small Number of alignments=533 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D452 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)T473 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 T0547 32 :IDIVKEL 2j66A 9 :TALTKRF T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 2j66A 16 :ETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFS T0547 133 :GFKDRELINIGF 2j66A 93 :PGKKRSELEIAV T0547 148 :EMGHNI 2j66A 105 :QSGIYC T0547 155 :LTIEGLNELEAIIDIAKER 2j66A 111 :IIAESVEELFYIEELAEKE T0547 175 :KPKPNIGLRVRL 2j66A 130 :NKTARVAIRINP T0547 188 :SA 2j66A 143 :KS T0547 193 :IW 2j66A 149 :AI T0547 196 :KSGGINSKFGLTSTELIEAVNLLKENKLLE 2j66A 151 :KMGGVPRQFGMDESMLDAVMDAVRSLQFTK T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2j66A 181 :FIGIHVYTGTQNLNTDSIIESMKYTVDLGRNI T0547 259 :RKMGA 2j66A 214 :ERYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 288 :RNYTLREYANDVVFILKNIAEQ 2j66A 238 :KALDIGKITRTVSDYVQEARDT T0547 311 :KD 2j66A 261 :FP T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYA 2j66A 263 :QTTFIIESGRYLLAQAAVYVTEVLYRKASKGE T0547 438 :ERYLVNFSLFQSMP 2j66A 295 :VFVIVDGGMHHHAA T0547 474 :RSASIWDITCDSDGEISYS 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 497 :LFLHDVDVEK 2j66A 356 :VHVPALYPGD T0547 510 :FLGFFLVGAYQEVLGM 2j66A 366 :LVCVLNSGAYGLSFSP T0547 526 :KHNLFTHPTEAIIS 2j66A 383 :HFLGHPTPIEILKR T0547 544 :GYEVEGIIEAQSILDTLE 2j66A 397 :NGSYELIRRKGTADDIVA Number of specific fragments extracted= 23 number of extra gaps= 0 total=11927 Will force an alignment to be made, even if fragment is small Number of alignments=534 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)G192 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D452 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)T473 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)D564 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 T0547 28 :KPAIIDIVKEL 2j66A 5 :QAEITALTKRF T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2j66A 16 :ETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGA 2j66A 65 :LGVEVASAGELALARHAGFSAE T0547 128 :PITVNGFKDRELINIGF 2j66A 88 :IIFSGPGKKRSELEIAV T0547 150 :GHNI 2j66A 105 :QSGI T0547 154 :TLTIEGLNELEAIIDIAKER 2j66A 110 :CIIAESVEELFYIEELAEKE T0547 175 :KPKPNIGLRVRLHSA 2j66A 130 :NKTARVAIRINPDKS T0547 193 :IW 2j66A 149 :AI T0547 196 :KSGGINSKFGLTSTELIEAVNLLKENKLLE 2j66A 151 :KMGGVPRQFGMDESMLDAVMDAVRSLQFTK T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2j66A 181 :FIGIHVYTGTQNLNTDSIIESMKYTVDLGRNI T0547 259 :RKMGA 2j66A 214 :ERYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 288 :RNYTLREYANDVVFILKNIAEQKKD 2j66A 238 :KALDIGKITRTVSDYVQEARDTRFP T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQE 2j66A 263 :QTTFIIESGRYLLAQAAVYVTEVLYRKASK T0547 436 :VQERYLVNFSLFQSMP 2j66A 293 :GEVFVIVDGGMHHHAA T0547 474 :RSASIWDITCDSDGEISYS 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 497 :LFLHDVDVEK 2j66A 356 :VHVPALYPGD T0547 510 :FLGFFLVGAYQEVLGM 2j66A 366 :LVCVLNSGAYGLSFSP T0547 526 :KHNLFTHPTEAIIS 2j66A 383 :HFLGHPTPIEILKR T0547 544 :GYEVEGIIEAQSILDTLEDL 2j66A 397 :NGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 21 number of extra gaps= 1 total=11948 Will force an alignment to be made, even if fragment is small Number of alignments=535 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)G192 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D452 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)T473 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 T0547 32 :IDIVKEL 2j66A 9 :TALTKRF T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2j66A 16 :ETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGA 2j66A 65 :LGVEVASAGELALARHAGFSAE T0547 128 :PITVNGFKDRELINIGF 2j66A 88 :IIFSGPGKKRSELEIAV T0547 150 :GHNI 2j66A 105 :QSGI T0547 154 :TLTIEGLNELEAIIDIAKER 2j66A 110 :CIIAESVEELFYIEELAEKE T0547 175 :KPKPNIGLRVRLHSA 2j66A 130 :NKTARVAIRINPDKS T0547 193 :IW 2j66A 149 :AI T0547 196 :KSGGINSKFGLTSTELIEAVNLLKENKLLE 2j66A 151 :KMGGVPRQFGMDESMLDAVMDAVRSLQFTK T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2j66A 181 :FIGIHVYTGTQNLNTDSIIESMKYTVDLGRNI T0547 259 :RKMGA 2j66A 214 :ERYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 288 :RNYTLREYANDVVFILKNIAEQKKD 2j66A 238 :KALDIGKITRTVSDYVQEARDTRFP T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQE 2j66A 263 :QTTFIIESGRYLLAQAAVYVTEVLYRKASK T0547 436 :VQERYLVNFSLFQSMP 2j66A 293 :GEVFVIVDGGMHHHAA T0547 474 :RSASIWDITCDSDGEISYS 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 497 :LFLHDVDVEK 2j66A 356 :VHVPALYPGD T0547 510 :FLGFFLVGAYQEVLGM 2j66A 366 :LVCVLNSGAYGLSFSP T0547 526 :KHNLFTHPTEAIIS 2j66A 383 :HFLGHPTPIEILKR T0547 544 :GYEVEGIIEAQSILDTLE 2j66A 397 :NGSYELIRRKGTADDIVA Number of specific fragments extracted= 21 number of extra gaps= 0 total=11969 Will force an alignment to be made, even if fragment is small Number of alignments=536 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)V35 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)Y290 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)T473 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)E561 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2j66A 8 :ITALTKRFETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYN 2j66A 65 :LGVEVASAGELALARHAG T0547 124 :NEGAPITVNGFKDRELINI 2j66A 84 :SAENIIFSGPGKKRSELEI T0547 146 :AAEMGH 2j66A 103 :AVQSGI T0547 153 :ITLTIEGLNELEAIIDIAKER 2j66A 109 :YCIIAESVEELFYIEELAEKE T0547 175 :KPKPNIGLRVRLHSA 2j66A 130 :NKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTK T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 181 :FIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 291 :TLREYANDVVFILKNI 2j66A 238 :KALDIGKITRTVSDYV T0547 307 :AEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 2j66A 256 :ARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAA T0547 474 :RSASIWDITCDSDGEISYS 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 497 :LFLH 2j66A 356 :VHVP T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTL 2j66A 360 :ALYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 14 number of extra gaps= 1 total=11983 Will force an alignment to be made, even if fragment is small Number of alignments=537 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)Y290 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)T473 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2j66A 7 :EITALTKRFETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYN 2j66A 65 :LGVEVASAGELALARHAG T0547 124 :NEGAPITVNGFKDRELINI 2j66A 84 :SAENIIFSGPGKKRSELEI T0547 146 :AAEMGH 2j66A 103 :AVQSGI T0547 153 :ITLTIEGLNELEAIIDIAKER 2j66A 109 :YCIIAESVEELFYIEELAEKE T0547 175 :KPKPNIGLRVRLHSA 2j66A 130 :NKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTK T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 181 :FIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 291 :TLREYANDVVFILKNI 2j66A 238 :KALDIGKITRTVSDYV T0547 307 :AEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 2j66A 256 :ARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAA T0547 474 :RSASIWDITCDSDGEISYS 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 497 :LFLH 2j66A 356 :VHVP T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIE 2j66A 360 :ALYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNGSYELIRRKGT Number of specific fragments extracted= 14 number of extra gaps= 0 total=11997 Will force an alignment to be made, even if fragment is small Number of alignments=538 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)E285 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)S368 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)G455 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)L456 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKR T0547 140 :INIGF 2j66A 98 :SELEI T0547 146 :AAEMGHNI 2j66A 103 :AVQSGIYC T0547 155 :LTIEGLNELEAIIDIAKE 2j66A 111 :IIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLL 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFT T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 180 :KFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 286 :KSR 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKNIAE 2j66A 241 :DIGKITRTVSDYVQEARD T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2j66A 259 :TRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKG T0547 346 :ENKLILKKQNPK 2j66A 294 :EVFVIVDGGMHH T0547 369 :IKPS 2j66A 322 :MEYI T0547 380 :DSIDHLESILTLFDLGYVD 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPAD 2j66A 383 :HFLGHP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFW 2j66A 391 :IEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 18 number of extra gaps= 1 total=12015 Will force an alignment to be made, even if fragment is small Number of alignments=539 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)E285 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)K370 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)G455 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)L456 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGN 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSR T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLGK 2j66A 38 :TNPAIQFYLSLKANNNIHLAKLFRQWGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2j66A 66 :GVEVASAGELALARHAGFSAENIIFSGPGKKR T0547 140 :INIGF 2j66A 98 :SELEI T0547 146 :AAEMGHNI 2j66A 103 :AVQSGIYC T0547 155 :LTIEGLNELEAIIDIAKE 2j66A 111 :IIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLL 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFT T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2j66A 180 :KFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNI T0547 259 :RKMGA 2j66A 214 :ERYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 286 :KSR 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKNIAEQ 2j66A 241 :DIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKG T0547 346 :ENKLILKKQNPK 2j66A 294 :EVFVIVDGGMHH T0547 358 :LI 2j66A 307 :AA T0547 371 :PSNA 2j66A 322 :MEYI T0547 380 :DSIDHLESILTLFDLGYVD 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQN 2j66A 383 :HFL T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFW 2j66A 388 :PTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 21 number of extra gaps= 1 total=12036 Will force an alignment to be made, even if fragment is small Number of alignments=540 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)K370 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)G455 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)L456 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKR T0547 140 :INIGF 2j66A 98 :SELEI T0547 146 :AAEMGH 2j66A 103 :AVQSGI T0547 153 :ITLTIEGLNELEAIIDIAKE 2j66A 109 :YCIIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTK T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 181 :FIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 288 :RNYTLREYANDVVFILKNIAEQ 2j66A 238 :KALDIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKG T0547 346 :ENKLILKKQNPK 2j66A 294 :EVFVIVDGGMHH T0547 358 :LI 2j66A 307 :AA T0547 371 :PSNA 2j66A 322 :MEYI T0547 380 :DSIDHLESILTLFDLGYVD 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPAD 2j66A 383 :HFLGHP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFW 2j66A 391 :IEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 18 number of extra gaps= 1 total=12054 Will force an alignment to be made, even if fragment is small Number of alignments=541 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)E285 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)K370 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)G455 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)L456 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2j66A 66 :GVEVASAGELALARHAGFSAENIIFSGPGKKR T0547 140 :INIGF 2j66A 98 :SELEI T0547 146 :AAEMGHNI 2j66A 103 :AVQSGIYC T0547 155 :LTIEGLNELEAIIDIAKE 2j66A 111 :IIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTK T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2j66A 181 :FIGIHVYTGTQNLNTDSIIESMKYTVDLGRNI T0547 259 :RKMGA 2j66A 214 :ERYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 286 :K 2j66A 238 :K T0547 289 :NYTLREYANDVVFILKNIAEQ 2j66A 239 :ALDIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKG T0547 346 :ENKLILKKQNPK 2j66A 294 :EVFVIVDGGMHH T0547 358 :LI 2j66A 307 :AA T0547 371 :PSNA 2j66A 322 :MEYI T0547 380 :DSIDHLESILTLFDLGYVD 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQN 2j66A 383 :HFL T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFW 2j66A 388 :PTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 21 number of extra gaps= 1 total=12075 Will force an alignment to be made, even if fragment is small Number of alignments=542 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)I359 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)K370 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKR T0547 140 :INIGF 2j66A 98 :SELEI T0547 146 :AAEMGHNI 2j66A 103 :AVQSGIYC T0547 155 :LTIEGLNELEAIIDIAKE 2j66A 111 :IIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLL 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFT T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 180 :KFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 288 :RNYTLREYANDVVFILKNIAEQ 2j66A 238 :KALDIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKG T0547 346 :ENKLILKKQNPK 2j66A 294 :EVFVIVDGGMHH T0547 358 :L 2j66A 308 :A T0547 371 :PS 2j66A 322 :ME T0547 380 :DSIDHLESILTLFDLGYVD 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPAD 2j66A 383 :HFLGHP T0547 429 :L 2j66A 390 :P T0547 536 :AIISINEKGYEVEG 2j66A 391 :IEILKRNGSYELIR T0547 582 :KLVNDKQKK 2j66A 405 :RKGTADDIV Number of specific fragments extracted= 20 number of extra gaps= 0 total=12095 Will force an alignment to be made, even if fragment is small Number of alignments=543 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)E285 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)K370 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)G455 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)L456 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLGK 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2j66A 66 :GVEVASAGELALARHAGFSAENIIFSGPGKKR T0547 140 :INIGF 2j66A 98 :SELEI T0547 146 :AAEMGHNI 2j66A 103 :AVQSGIYC T0547 155 :LTIEGLNELEAIIDIAKE 2j66A 111 :IIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLL 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFT T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 180 :KFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 286 :KSR 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKNIAE 2j66A 241 :DIGKITRTVSDYVQEARD T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2j66A 259 :TRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKG T0547 346 :ENKLILKKQNPK 2j66A 294 :EVFVIVDGGMHH T0547 358 :LI 2j66A 307 :AA T0547 371 :PSNA 2j66A 322 :MEYI T0547 380 :DSIDHLESILTLFDLGYVD 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPAD 2j66A 383 :HFLGHP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFW 2j66A 391 :IEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 19 number of extra gaps= 1 total=12114 Will force an alignment to be made, even if fragment is small Number of alignments=544 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)E285 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)S368 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)G455 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)L456 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKR T0547 140 :INIGF 2j66A 98 :SELEI T0547 146 :AAEMGHNI 2j66A 103 :AVQSGIYC T0547 155 :LTIEGLNELEAIIDIAKE 2j66A 111 :IIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLL 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFT T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 180 :KFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 286 :KSR 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKNIAE 2j66A 241 :DIGKITRTVSDYVQEARD T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2j66A 259 :TRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKG T0547 346 :ENKLILKKQNPK 2j66A 294 :EVFVIVDGGMHH T0547 369 :IKPS 2j66A 322 :MEYI T0547 380 :DSIDHLESILTLFDLGYVD 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPAD 2j66A 383 :HFLGHP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFW 2j66A 391 :IEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 18 number of extra gaps= 1 total=12132 Will force an alignment to be made, even if fragment is small Number of alignments=545 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)E285 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)K370 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)G455 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)L456 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGN 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSR T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLGK 2j66A 38 :TNPAIQFYLSLKANNNIHLAKLFRQWGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2j66A 66 :GVEVASAGELALARHAGFSAENIIFSGPGKKR T0547 140 :INIGF 2j66A 98 :SELEI T0547 146 :AAEMGHNI 2j66A 103 :AVQSGIYC T0547 155 :LTIEGLNELEAIIDIAKE 2j66A 111 :IIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLL 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFT T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2j66A 180 :KFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNI T0547 259 :RKMGA 2j66A 214 :ERYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 286 :KSR 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKNIAEQ 2j66A 241 :DIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKG T0547 346 :ENKLILKKQNPK 2j66A 294 :EVFVIVDGGMHH T0547 358 :LI 2j66A 307 :AA T0547 371 :PSNA 2j66A 322 :MEYI T0547 380 :DSIDHLESILTLFDLGYVD 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQN 2j66A 383 :HFL T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFW 2j66A 388 :PTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 21 number of extra gaps= 1 total=12153 Will force an alignment to be made, even if fragment is small Number of alignments=546 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)K370 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)G455 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)L456 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKR T0547 140 :INIGF 2j66A 98 :SELEI T0547 146 :AAEMGH 2j66A 103 :AVQSGI T0547 153 :ITLTIEGLNELEAIIDIAKE 2j66A 109 :YCIIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTK T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 181 :FIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 288 :RNYTLREYANDVVFILKNIAEQ 2j66A 238 :KALDIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKG T0547 346 :ENKLILKKQNPK 2j66A 294 :EVFVIVDGGMHH T0547 358 :LI 2j66A 307 :AA T0547 371 :PSNA 2j66A 322 :MEYI T0547 380 :DSIDHLESILTLFDLGYVD 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPAD 2j66A 383 :HFLGHP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFW 2j66A 391 :IEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 18 number of extra gaps= 1 total=12171 Will force an alignment to be made, even if fragment is small Number of alignments=547 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)E285 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)K370 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)G455 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)L456 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2j66A 66 :GVEVASAGELALARHAGFSAENIIFSGPGKKR T0547 140 :INIGF 2j66A 98 :SELEI T0547 146 :AAEMGHNI 2j66A 103 :AVQSGIYC T0547 155 :LTIEGLNELEAIIDIAKE 2j66A 111 :IIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTK T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2j66A 181 :FIGIHVYTGTQNLNTDSIIESMKYTVDLGRNI T0547 259 :RKMGA 2j66A 214 :ERYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 286 :K 2j66A 238 :K T0547 289 :NYTLREYANDVVFILKNIAEQ 2j66A 239 :ALDIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKG T0547 346 :ENKLILKKQNPK 2j66A 294 :EVFVIVDGGMHH T0547 358 :LI 2j66A 307 :AA T0547 371 :PSNA 2j66A 322 :MEYI T0547 380 :DSIDHLESILTLFDLGYVD 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQN 2j66A 383 :HFL T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFW 2j66A 388 :PTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 21 number of extra gaps= 1 total=12192 Will force an alignment to be made, even if fragment is small Number of alignments=548 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)I359 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)K370 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKR T0547 140 :INIGF 2j66A 98 :SELEI T0547 146 :AAEMGHNI 2j66A 103 :AVQSGIYC T0547 155 :LTIEGLNELEAIIDIAKE 2j66A 111 :IIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLL 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFT T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 180 :KFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 288 :RNYTLREYANDVVFILKNIAEQ 2j66A 238 :KALDIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKG T0547 346 :ENKLILKKQNPK 2j66A 294 :EVFVIVDGGMHH T0547 358 :L 2j66A 308 :A T0547 371 :PS 2j66A 322 :ME T0547 380 :DSIDHLESILTLFDLGYVD 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPAD 2j66A 383 :HFLGHP T0547 429 :L 2j66A 390 :P T0547 536 :AIISINEKGYEVEG 2j66A 391 :IEILKRNGSYELIR T0547 582 :KLVNDKQKK 2j66A 405 :RKGTADDIV Number of specific fragments extracted= 20 number of extra gaps= 0 total=12212 Will force an alignment to be made, even if fragment is small Number of alignments=549 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)E285 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)K370 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)G455 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)L456 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLGK 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2j66A 66 :GVEVASAGELALARHAGFSAENIIFSGPGKKR T0547 140 :INIGF 2j66A 98 :SELEI T0547 146 :AAEMGHNI 2j66A 103 :AVQSGIYC T0547 155 :LTIEGLNELEAIIDIAKE 2j66A 111 :IIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLL 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFT T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 180 :KFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 286 :KSR 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKNIAE 2j66A 241 :DIGKITRTVSDYVQEARD T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2j66A 259 :TRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKG T0547 346 :ENKLILKKQNPK 2j66A 294 :EVFVIVDGGMHH T0547 358 :LI 2j66A 307 :AA T0547 371 :PSNA 2j66A 322 :MEYI T0547 380 :DSIDHLESILTLFDLGYVD 2j66A 337 :EKVTIAGPLCTPEDCLGKD T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQN 2j66A 383 :HFL T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFW 2j66A 388 :PTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 19 number of extra gaps= 1 total=12231 Will force an alignment to be made, even if fragment is small Number of alignments=550 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)S368 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)Q458 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 28 :KPAIIDIVKE 2j66A 5 :QAEITALTKR T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2j66A 15 :FETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGP T0547 135 :KDRELINIGF 2j66A 95 :KKRSELEIAV T0547 148 :EMGHNIT 2j66A 105 :QSGIYCI T0547 156 :TIEGLNELEAIIDIAKE 2j66A 112 :IAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFT 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2j66A 184 :IHVYTGTQNLNTDSIIESMKYTVDLGRNIY T0547 260 :KMGA 2j66A 215 :RYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 284 :NEK 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKNIAEQ 2j66A 241 :DIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEV T0547 348 :KLILKK 2j66A 296 :FVIVDG T0547 354 :QNPKL 2j66A 303 :MHHHA T0547 369 :IKPS 2j66A 322 :MEYI T0547 377 :YLHDSIDHLESILTLFDLGY 2j66A 337 :EKVTIAGPLCTPEDCLGKDV T0547 398 :DLQDRSNAEILTHLITKKAILLLGD 2j66A 357 :HVPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPADLLAIQDE 2j66A 383 :HFLGHPTPIEILK T0547 437 :QERYLVNFSLFQSMPDFWGLE 2j66A 396 :RNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 22 number of extra gaps= 1 total=12253 Will force an alignment to be made, even if fragment is small Number of alignments=551 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)Q458 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 28 :KPAIIDIVKE 2j66A 5 :QAEITALTKR T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2j66A 15 :FETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLGK 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2j66A 66 :GVEVASAGELALARHAGFSAENIIFSGP T0547 135 :KDRELINIGF 2j66A 95 :KKRSELEIAV T0547 148 :EMGHNIT 2j66A 105 :QSGIYCI T0547 156 :TIEGLNELEAIIDIAKE 2j66A 112 :IAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFT 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2j66A 184 :IHVYTGTQNLNTDSIIESMKYTVDLGRNIY T0547 260 :KMGA 2j66A 215 :RYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 284 :NEK 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKN 2j66A 241 :DIGKITRTVSDYVQE T0547 307 :AEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2j66A 256 :ARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEV T0547 348 :KLILKK 2j66A 296 :FVIVDG T0547 354 :QNPKLI 2j66A 303 :MHHHAA T0547 370 :KP 2j66A 324 :YI T0547 377 :YLHDSIDHLESILTLFDLGYV 2j66A 337 :EKVTIAGPLCTPEDCLGKDVH T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPADLLAIQDEVQ 2j66A 383 :HFLGHPTPIEILKRN T0547 439 :RYLVNFSLFQSMPDFWGLE 2j66A 398 :GSYELIRRKGTADDIVATQ Number of specific fragments extracted= 22 number of extra gaps= 1 total=12275 Will force an alignment to be made, even if fragment is small Number of alignments=552 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)Q458 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 28 :KPAIIDIVKE 2j66A 5 :QAEITALTKR T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2j66A 15 :FETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGP T0547 135 :KDRELINIGF 2j66A 95 :KKRSELEIAV T0547 148 :EMGHNIT 2j66A 105 :QSGIYCI T0547 156 :TIEGLNELEAIIDIAKE 2j66A 112 :IAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFT 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2j66A 184 :IHVYTGTQNLNTDSIIESMKYTVDLGRNIY T0547 260 :KMGA 2j66A 215 :RYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 284 :NEK 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKNIAEQ 2j66A 241 :DIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEV T0547 348 :KLILKK 2j66A 296 :FVIVDG T0547 354 :QNPKLI 2j66A 303 :MHHHAA T0547 377 :YLHDSIDHLESILTLFDLGY 2j66A 337 :EKVTIAGPLCTPEDCLGKDV T0547 398 :DLQDRSNAEILTHLITKKAILLLGD 2j66A 357 :HVPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPADLLAIQDEVQER 2j66A 383 :HFLGHPTPIEILKRNGS T0547 441 :LVNFSLFQSMPDFWGLE 2j66A 400 :YELIRRKGTADDIVATQ Number of specific fragments extracted= 21 number of extra gaps= 1 total=12296 Will force an alignment to be made, even if fragment is small Number of alignments=553 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)Q458 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 28 :KPAIIDIVKE 2j66A 5 :QAEITALTKR T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2j66A 15 :FETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2j66A 66 :GVEVASAGELALARHAGFSAENIIFSGP T0547 135 :KDRELINIGF 2j66A 95 :KKRSELEIAV T0547 148 :EMGHNIT 2j66A 105 :QSGIYCI T0547 156 :TIEGLNELEAIIDIAKE 2j66A 112 :IAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFT 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2j66A 184 :IHVYTGTQNLNTDSIIESMKYTVDLGRNIY T0547 260 :KMGA 2j66A 215 :RYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 284 :NEK 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKN 2j66A 241 :DIGKITRTVSDYVQE T0547 307 :AEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2j66A 256 :ARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEV T0547 348 :KLILKK 2j66A 296 :FVIVDG T0547 354 :QNPKLI 2j66A 303 :MHHHAA T0547 370 :KP 2j66A 324 :YI T0547 377 :YLHDSIDHLESILTLFDLGYV 2j66A 337 :EKVTIAGPLCTPEDCLGKDVH T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPADLLAIQDEVQ 2j66A 383 :HFLGHPTPIEILKRN T0547 439 :RYLVNFSLFQSMPDFWGLE 2j66A 398 :GSYELIRRKGTADDIVATQ Number of specific fragments extracted= 22 number of extra gaps= 1 total=12318 Will force an alignment to be made, even if fragment is small Number of alignments=554 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)P356 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S368 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)Q458 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 28 :KPAIIDIVKE 2j66A 5 :QAEITALTKR T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2j66A 15 :FETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGP T0547 135 :KDRELINIGF 2j66A 95 :KKRSELEIAV T0547 148 :EMGHNIT 2j66A 105 :QSGIYCI T0547 156 :TIEGLNELEAIIDIAKE 2j66A 112 :IAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFT 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2j66A 184 :IHVYTGTQNLNTDSIIESMKYTVDLGRNIY T0547 260 :KMGA 2j66A 215 :RYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 284 :NEK 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKNIAEQ 2j66A 241 :DIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEV T0547 348 :KLILKK 2j66A 296 :FVIVDG T0547 354 :QN 2j66A 303 :MH T0547 369 :I 2j66A 322 :M T0547 377 :YLHDSIDHLESILTLFDLGY 2j66A 337 :EKVTIAGPLCTPEDCLGKDV T0547 398 :DLQDRSNAEILTHLITKKAILLLGD 2j66A 357 :HVPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPADLLAIQDEVQER 2j66A 383 :HFLGHPTPIEILKRNGS T0547 441 :LVNFSLFQSMPDFWGLE 2j66A 400 :YELIRRKGTADDIVATQ Number of specific fragments extracted= 22 number of extra gaps= 1 total=12340 Will force an alignment to be made, even if fragment is small Number of alignments=555 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)Q458 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 28 :KPAIIDIVKE 2j66A 5 :QAEITALTKR T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2j66A 15 :FETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2j66A 66 :GVEVASAGELALARHAGFSAENIIFSGP T0547 135 :KDRELINIGF 2j66A 95 :KKRSELEIAV T0547 148 :EMGHNIT 2j66A 105 :QSGIYCI T0547 156 :TIEGLNELEAIIDIAKE 2j66A 112 :IAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFT 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2j66A 184 :IHVYTGTQNLNTDSIIESMKYTVDLGRNIY T0547 260 :KMGA 2j66A 215 :RYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 284 :NEK 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKN 2j66A 241 :DIGKITRTVSDYVQE T0547 307 :AEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2j66A 256 :ARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEV T0547 348 :KLILKK 2j66A 296 :FVIVDG T0547 354 :QNPKLI 2j66A 303 :MHHHAA T0547 377 :YLHDSIDHLESILTLFDLGYV 2j66A 337 :EKVTIAGPLCTPEDCLGKDVH T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPADLLAIQDEVQ 2j66A 383 :HFLGHPTPIEILKRN T0547 439 :RYLVNFSLFQSMPDFWGLE 2j66A 398 :GSYELIRRKGTADDIVATQ Number of specific fragments extracted= 21 number of extra gaps= 1 total=12361 Will force an alignment to be made, even if fragment is small Number of alignments=556 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)S368 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)Q458 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 T0547 28 :KPAIIDIVKE 2j66A 5 :QAEITALTKR T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2j66A 15 :FETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGP T0547 135 :KDRELINIGF 2j66A 95 :KKRSELEIAV T0547 148 :EMGHNIT 2j66A 105 :QSGIYCI T0547 156 :TIEGLNELEAIIDIAKE 2j66A 112 :IAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFT 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2j66A 184 :IHVYTGTQNLNTDSIIESMKYTVDLGRNIY T0547 260 :KMGA 2j66A 215 :RYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 284 :NEK 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKNIAEQ 2j66A 241 :DIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEV T0547 348 :KLILKK 2j66A 296 :FVIVDG T0547 354 :QNPKL 2j66A 303 :MHHHA T0547 369 :IKPS 2j66A 322 :MEYI T0547 377 :YLHDSIDHLESILTLFDLGY 2j66A 337 :EKVTIAGPLCTPEDCLGKDV T0547 398 :DLQDRSNAEILTHLITKKAILLLGD 2j66A 357 :HVPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPADLLAIQDE 2j66A 383 :HFLGHPTPIEILK T0547 437 :QERYLVNFSLFQSMPDFWGLE 2j66A 396 :RNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 22 number of extra gaps= 1 total=12383 Will force an alignment to be made, even if fragment is small Number of alignments=557 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)Q458 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 28 :KPAIIDIVKE 2j66A 5 :QAEITALTKR T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2j66A 15 :FETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLGK 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2j66A 66 :GVEVASAGELALARHAGFSAENIIFSGP T0547 135 :KDRELINIGF 2j66A 95 :KKRSELEIAV T0547 148 :EMGHNIT 2j66A 105 :QSGIYCI T0547 156 :TIEGLNELEAIIDIAKE 2j66A 112 :IAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFT 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2j66A 184 :IHVYTGTQNLNTDSIIESMKYTVDLGRNIY T0547 260 :KMGA 2j66A 215 :RYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 284 :NEK 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKN 2j66A 241 :DIGKITRTVSDYVQE T0547 307 :AEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2j66A 256 :ARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEV T0547 348 :KLILKK 2j66A 296 :FVIVDG T0547 354 :QNPKLI 2j66A 303 :MHHHAA T0547 370 :KP 2j66A 324 :YI T0547 377 :YLHDSIDHLESILTLFDLGYV 2j66A 337 :EKVTIAGPLCTPEDCLGKDVH T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPADLLAIQDEVQ 2j66A 383 :HFLGHPTPIEILKRN T0547 439 :RYLVNFSLFQSMPDFWGLE 2j66A 398 :GSYELIRRKGTADDIVATQ Number of specific fragments extracted= 22 number of extra gaps= 1 total=12405 Will force an alignment to be made, even if fragment is small Number of alignments=558 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)Q458 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 28 :KPAIIDIVKE 2j66A 5 :QAEITALTKR T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2j66A 15 :FETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGP T0547 135 :KDRELINIGF 2j66A 95 :KKRSELEIAV T0547 148 :EMGHNIT 2j66A 105 :QSGIYCI T0547 156 :TIEGLNELEAIIDIAKE 2j66A 112 :IAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFT 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2j66A 184 :IHVYTGTQNLNTDSIIESMKYTVDLGRNIY T0547 260 :KMGA 2j66A 215 :RYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 284 :NEK 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKNIAEQ 2j66A 241 :DIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEV T0547 348 :KLILKK 2j66A 296 :FVIVDG T0547 354 :QNPKLI 2j66A 303 :MHHHAA T0547 377 :YLHDSIDHLESILTLFDLGY 2j66A 337 :EKVTIAGPLCTPEDCLGKDV T0547 398 :DLQDRSNAEILTHLITKKAILLLGD 2j66A 357 :HVPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPADLLAIQDEVQER 2j66A 383 :HFLGHPTPIEILKRNGS T0547 441 :LVNFSLFQSMPDFWGLE 2j66A 400 :YELIRRKGTADDIVATQ Number of specific fragments extracted= 21 number of extra gaps= 1 total=12426 Will force an alignment to be made, even if fragment is small Number of alignments=559 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)Q458 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 28 :KPAIIDIVKE 2j66A 5 :QAEITALTKR T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2j66A 15 :FETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2j66A 66 :GVEVASAGELALARHAGFSAENIIFSGP T0547 135 :KDRELINIGF 2j66A 95 :KKRSELEIAV T0547 148 :EMGHNIT 2j66A 105 :QSGIYCI T0547 156 :TIEGLNELEAIIDIAKE 2j66A 112 :IAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFT 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2j66A 184 :IHVYTGTQNLNTDSIIESMKYTVDLGRNIY T0547 260 :KMGA 2j66A 215 :RYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 284 :NEK 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKN 2j66A 241 :DIGKITRTVSDYVQE T0547 307 :AEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2j66A 256 :ARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEV T0547 348 :KLILKK 2j66A 296 :FVIVDG T0547 354 :QNPKLI 2j66A 303 :MHHHAA T0547 370 :KP 2j66A 324 :YI T0547 377 :YLHDSIDHLESILTLFDLGYV 2j66A 337 :EKVTIAGPLCTPEDCLGKDVH T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPADLLAIQDEVQ 2j66A 383 :HFLGHPTPIEILKRN T0547 439 :RYLVNFSLFQSMPDFWGLE 2j66A 398 :GSYELIRRKGTADDIVATQ Number of specific fragments extracted= 22 number of extra gaps= 1 total=12448 Will force an alignment to be made, even if fragment is small Number of alignments=560 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)P356 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S368 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)L336 Warning: unaligning (T0547)Q458 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 28 :KPAIIDIVKE 2j66A 5 :QAEITALTKR T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2j66A 15 :FETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGP T0547 135 :KDRELINIGF 2j66A 95 :KKRSELEIAV T0547 148 :EMGHNIT 2j66A 105 :QSGIYCI T0547 156 :TIEGLNELEAIIDIAKE 2j66A 112 :IAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFT 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2j66A 184 :IHVYTGTQNLNTDSIIESMKYTVDLGRNIY T0547 260 :KMGA 2j66A 215 :RYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 284 :NEK 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKNIAEQ 2j66A 241 :DIGKITRTVSDYVQEARDT T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2j66A 260 :RFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEV T0547 348 :KLILKK 2j66A 296 :FVIVDG T0547 354 :QN 2j66A 303 :MH T0547 369 :I 2j66A 322 :M T0547 377 :YLHDSIDHLESILTLFDLGY 2j66A 337 :EKVTIAGPLCTPEDCLGKDV T0547 398 :DLQDRSNAEILTHLITKKAILLLGD 2j66A 357 :HVPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPADLLAIQDEVQER 2j66A 383 :HFLGHPTPIEILKRNGS T0547 441 :LVNFSLFQSMPDFWGLE 2j66A 400 :YELIRRKGTADDIVATQ Number of specific fragments extracted= 22 number of extra gaps= 1 total=12470 Will force an alignment to be made, even if fragment is small Number of alignments=561 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)Q458 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 28 :KPAIIDIVKE 2j66A 5 :QAEITALTKR T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2j66A 15 :FETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2j66A 66 :GVEVASAGELALARHAGFSAENIIFSGP T0547 135 :KDRELINIGF 2j66A 95 :KKRSELEIAV T0547 148 :EMGHNIT 2j66A 105 :QSGIYCI T0547 156 :TIEGLNELEAIIDIAKE 2j66A 112 :IAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFT 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2j66A 184 :IHVYTGTQNLNTDSIIESMKYTVDLGRNIY T0547 260 :KMGA 2j66A 215 :RYGI T0547 265 :NLKAINLGGGLAVEY 2j66A 219 :VCECINLGGGFGVPY T0547 284 :NEK 2j66A 238 :KAL T0547 291 :TLREYANDVVFILKN 2j66A 241 :DIGKITRTVSDYVQE T0547 307 :AEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2j66A 256 :ARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEV T0547 348 :KLILKK 2j66A 296 :FVIVDG T0547 354 :QNPKLI 2j66A 303 :MHHHAA T0547 377 :YLHDSIDHLESILTLFDLGYV 2j66A 337 :EKVTIAGPLCTPEDCLGKDVH T0547 399 :LQDRSNAEILTHLITKKAILLLGD 2j66A 358 :VPALYPGDLVCVLNSGAYGLSFSP T0547 423 :KQNPADLLAIQDEVQ 2j66A 383 :HFLGHPTPIEILKRN T0547 439 :RYLVNFSLFQSMPDFWGLE 2j66A 398 :GSYELIRRKGTADDIVATQ Number of specific fragments extracted= 21 number of extra gaps= 1 total=12491 Will force an alignment to be made, even if fragment is small Number of alignments=562 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)Q458 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRTNP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2j66A 41 :AIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQSGIY T0547 154 :TLTIEGLNELEAIIDIAKE 2j66A 110 :CIIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQ T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 178 :FTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 284 :NEKSRNYTLREYANDVVFI 2j66A 238 :KALDIGKITRTVSDYVQEA T0547 308 :EQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 2j66A 257 :RDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAA T0547 380 :DSIDHLESILTLFDLGYVDLQDR 2j66A 337 :EKVTIAGPLCTPEDCLGKDVHVP T0547 403 :SNAEILTHLITKKAILLLGDKQNP 2j66A 361 :LYPGDLVCVLNSGAYGLSFSPVHF T0547 427 :ADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 2j66A 386 :GHPTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 12 number of extra gaps= 1 total=12503 Will force an alignment to be made, even if fragment is small Number of alignments=563 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)F460 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQSGIY T0547 154 :TLTIEGLNELEAIIDIAKE 2j66A 110 :CIIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQ T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 178 :FTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 284 :NEKSR 2j66A 238 :KALDI T0547 294 :EYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 2j66A 243 :GKITRTVSDYVQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAA T0547 380 :DSIDHLESILTLFDLGYVDLQDR 2j66A 337 :EKVTIAGPLCTPEDCLGKDVHVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2j66A 361 :LYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 11 number of extra gaps= 1 total=12514 Will force an alignment to be made, even if fragment is small Number of alignments=564 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)F460 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 28 :KPAIID 2j66A 5 :QAEITA T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFN 2j66A 11 :LTKRFETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQSGIY T0547 154 :TLTIEGLNELEAIIDIAKE 2j66A 110 :CIIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQ T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 178 :FTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 284 :NE 2j66A 238 :KA T0547 290 :YTLREYANDVVFILKNIAE 2j66A 240 :LDIGKITRTVSDYVQEARD T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 2j66A 259 :TRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAA T0547 380 :DSIDHLESILTLFDLGYVDLQDR 2j66A 337 :EKVTIAGPLCTPEDCLGKDVHVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2j66A 361 :LYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 13 number of extra gaps= 1 total=12527 Will force an alignment to be made, even if fragment is small Number of alignments=565 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)F460 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQSGIY T0547 154 :TLTIEGLNELEAIIDIAKE 2j66A 110 :CIIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQ T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 178 :FTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 284 :NEKSR 2j66A 238 :KALDI T0547 294 :EYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 2j66A 243 :GKITRTVSDYVQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAA T0547 380 :DSIDHLESILTLFDLGYVDLQDR 2j66A 337 :EKVTIAGPLCTPEDCLGKDVHVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2j66A 361 :LYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 11 number of extra gaps= 1 total=12538 Will force an alignment to be made, even if fragment is small Number of alignments=566 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)F460 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQSGIY T0547 154 :TLTIEGLNELEAIIDIAKE 2j66A 110 :CIIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQ T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 178 :FTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 284 :NEKS 2j66A 238 :KALD T0547 292 :LREYANDVVFILKNIA 2j66A 242 :IGKITRTVSDYVQEAR T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 2j66A 258 :DTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAA T0547 380 :DSIDHLESILTLFDLGYVDLQDR 2j66A 337 :EKVTIAGPLCTPEDCLGKDVHVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2j66A 361 :LYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 12 number of extra gaps= 1 total=12550 Will force an alignment to be made, even if fragment is small Number of alignments=567 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)F460 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQSGIY T0547 154 :TLTIEGLNELEAIIDIAKE 2j66A 110 :CIIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQ T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 178 :FTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 284 :NEKS 2j66A 238 :KALD T0547 293 :REYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 2j66A 242 :IGKITRTVSDYVQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAA T0547 380 :DSIDHLESILTLFDLGYVDLQDR 2j66A 337 :EKVTIAGPLCTPEDCLGKDVHVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2j66A 361 :LYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 11 number of extra gaps= 1 total=12561 Will force an alignment to be made, even if fragment is small Number of alignments=568 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2j66A 7 :EITALTKRFETPFYLYDGDFIEAHYRQLRSRTNP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2j66A 41 :AIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQSGIY T0547 154 :TLTIEGLNELEAIIDIAKE 2j66A 110 :CIIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQ T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 178 :FTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 284 :NEKSRNYTLREYANDVVFI 2j66A 238 :KALDIGKITRTVSDYVQEA T0547 308 :EQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 2j66A 257 :RDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAA T0547 380 :DSIDHLESILTLFDLGYVDLQDR 2j66A 337 :EKVTIAGPLCTPEDCLGKDVHVP T0547 403 :SNAEILTHLITKKAILLLGDKQNP 2j66A 361 :LYPGDLVCVLNSGAYGLSFSPVHF T0547 427 :ADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 2j66A 386 :GHPTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 12 number of extra gaps= 0 total=12573 Will force an alignment to be made, even if fragment is small Number of alignments=569 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)F460 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQSGIY T0547 154 :TLTIEGLNELEAIIDIAKE 2j66A 110 :CIIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQ T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 178 :FTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 284 :NEKSR 2j66A 238 :KALDI T0547 294 :EYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 2j66A 243 :GKITRTVSDYVQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAA T0547 380 :DSIDHLESILTLFDLGYVDLQDR 2j66A 337 :EKVTIAGPLCTPEDCLGKDVHVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2j66A 361 :LYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 11 number of extra gaps= 1 total=12584 Will force an alignment to be made, even if fragment is small Number of alignments=570 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)F460 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 28 :KPAIID 2j66A 5 :QAEITA T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFN 2j66A 11 :LTKRFETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQSGIY T0547 154 :TLTIEGLNELEAIIDIAKE 2j66A 110 :CIIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQ T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 178 :FTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 284 :NE 2j66A 238 :KA T0547 290 :YTLREYANDVVFILKNIAE 2j66A 240 :LDIGKITRTVSDYVQEARD T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 2j66A 259 :TRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAA T0547 380 :DSIDHLESILTLFDLGYVDLQDR 2j66A 337 :EKVTIAGPLCTPEDCLGKDVHVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2j66A 361 :LYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 13 number of extra gaps= 1 total=12597 Will force an alignment to be made, even if fragment is small Number of alignments=571 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)F460 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRTN T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 40 :PAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQSGIY T0547 154 :TLTIEGLNELEAIIDIAKE 2j66A 110 :CIIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQ T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 178 :FTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 284 :NEKSR 2j66A 238 :KALDI T0547 294 :EYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 2j66A 243 :GKITRTVSDYVQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAA T0547 380 :DSIDHLESILTLFDLGYVDLQDR 2j66A 337 :EKVTIAGPLCTPEDCLGKDVHVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2j66A 361 :LYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 11 number of extra gaps= 1 total=12608 Will force an alignment to be made, even if fragment is small Number of alignments=572 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)F460 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQSGIY T0547 154 :TLTIEGLNELEAIIDIAKE 2j66A 110 :CIIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQ T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 178 :FTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 284 :NEKS 2j66A 238 :KALD T0547 292 :LREYANDVVFILKNIA 2j66A 242 :IGKITRTVSDYVQEAR T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 2j66A 258 :DTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAA T0547 380 :DSIDHLESILTLFDLGYVDLQDR 2j66A 337 :EKVTIAGPLCTPEDCLGKDVHVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2j66A 361 :LYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 12 number of extra gaps= 1 total=12620 Will force an alignment to be made, even if fragment is small Number of alignments=573 # 2j66A read from all-align.a2m # found chain 2j66A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (2j66A)D4 Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)T148 Warning: unaligning (T0547)I193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)T148 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)E237 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)E237 Warning: unaligning (T0547)D360 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2j66A)P321 Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)P321 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2j66A)L336 Warning: unaligning (T0547)N459 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2j66A)Q418 Warning: unaligning (T0547)F460 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2j66A)Q418 T0547 33 :DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2j66A 5 :QAEITALTKRFETPFYLYDGDFIEAHYRQLRSRT T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2j66A 39 :NPAIQFYLSLKANNNIHLAKLFRQWG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2j66A 65 :LGVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQSGIY T0547 154 :TLTIEGLNELEAIIDIAKE 2j66A 110 :CIIAESVEELFYIEELAEK T0547 174 :FKPKPNIGLRVRLHSA 2j66A 129 :ENKTARVAIRINPDKS T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2j66A 149 :AIKMGGVPRQFGMDESMLDAVMDAVRSLQ T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2j66A 178 :FTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY T0547 284 :NEKS 2j66A 238 :KALD T0547 293 :REYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI 2j66A 242 :IGKITRTVSDYVQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAA T0547 380 :DSIDHLESILTLFDLGYVDLQDR 2j66A 337 :EKVTIAGPLCTPEDCLGKDVHVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2j66A 361 :LYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNGSYELIRRKGTADDIVATQ Number of specific fragments extracted= 11 number of extra gaps= 1 total=12631 Will force an alignment to be made, even if fragment is small Number of alignments=574 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)I538 because last residue in template chain is (2nvaA)I372 T0547 1 :MMDY 2nvaA 1 :MNSV T0547 9 :W 2nvaA 5 :V T0547 33 :DIVK 2nvaA 7 :NILK T0547 38 :LR 2nvaA 11 :AH T0547 42 :GYKG 2nvaA 13 :PHQT T0547 46 :PLLLRFPHLIQKQIENIYGNF 2nvaA 18 :SFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 150 :GHNI 2nvaA 104 :DQGV T0547 154 :TLTIEGLNELEAIIDIAKE 2nvaA 109 :IATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHS 2nvaA 128 :CKMILRIRCDD T0547 190 :GVGIWAKS 2nvaA 139 :PNATVQLG T0547 202 :SKFGLTSTELIEAVNLLKENK 2nvaA 147 :NKFGANEDEIRHLLEYAKQLD T0547 224 :LE 2nvaA 168 :IE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 170 :VIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYA 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGL T0547 438 :ERYLVNFSLFQSMPDFW 2nvaA 278 :YEYFFNESTYGGFSNVI T0547 455 :GLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYS 2nvaA 296 :EKSVPTPQLLRDVPDDEEYVPSVLYGCTCDGVDVINHN T0547 497 :LFLHDVDVEK 2nvaA 334 :VALPELHIGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAI 2nvaA 344 :WVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 23 number of extra gaps= 0 total=12654 Will force an alignment to be made, even if fragment is small Number of alignments=575 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)I538 because last residue in template chain is (2nvaA)I372 T0547 32 :IDIVKELRD 2nvaA 2 :NSVVNNILK T0547 41 :DGYKG 2nvaA 12 :HPHQT T0547 46 :PLLLRFPHLIQKQIENIYGNF 2nvaA 18 :SFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 150 :GHNI 2nvaA 104 :DQGV T0547 154 :TLTIEGLNELEAIIDIAKE 2nvaA 109 :IATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHS 2nvaA 128 :CKMILRIRCDD T0547 190 :GVGIWAKS 2nvaA 139 :PNATVQLG T0547 202 :SKFGLTSTELIEAVNLLKENK 2nvaA 147 :NKFGANEDEIRHLLEYAKQLD T0547 224 :LE 2nvaA 168 :IE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 170 :VIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYA 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGL T0547 438 :ERYLVNFSLFQSMPDFW 2nvaA 278 :YEYFFNESTYGGFSNVI T0547 455 :GLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYS 2nvaA 296 :EKSVPTPQLLRDVPDDEEYVPSVLYGCTCDGVDVINHN T0547 497 :LFLHDVDVEK 2nvaA 334 :VALPELHIGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAI 2nvaA 344 :WVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 20 number of extra gaps= 0 total=12674 Will force an alignment to be made, even if fragment is small Number of alignments=576 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)I538 because last residue in template chain is (2nvaA)I372 T0547 28 :KPAIIDIVKELRD 2nvaA 2 :NSVVNNILKAHPH T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2nvaA 15 :QTKSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFA T0547 133 :GFKDRELINIGF 2nvaA 92 :TMKTIDDLIFAK T0547 148 :EMGHN 2nvaA 104 :DQGVD T0547 154 :TLTIEGLNELEAIIDIAKERF 2nvaA 109 :IATFDSSFELDKIHTYHPNCK T0547 180 :IGLRVRLHS 2nvaA 130 :MILRIRCDD T0547 190 :GVGIWAKSG 2nvaA 139 :PNATVQLGN T0547 203 :KFGLTSTELIEAVNLLKENK 2nvaA 148 :KFGANEDEIRHLLEYAKQLD T0547 224 :LE 2nvaA 168 :IE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 170 :VIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 294 :EYANDVVFILKNIAE 2nvaA 229 :YMSDYINDAIKDFFP T0547 312 :DLEPDIFIESGRFVAANHAVLIAPVLELFS 2nvaA 244 :EDTVTIVAEPGRFFAEHYSVLATQVIGKRV T0547 436 :VQER 2nvaA 274 :RDGL T0547 440 :YLVNFSLFQSMPDFW 2nvaA 280 :YFFNESTYGGFSNVI T0547 456 :LEQNFPIMPL 2nvaA 295 :FEKSVPTPQL T0547 466 :DRLDEEPTRSASIWDITCDSDGEISYS 2nvaA 307 :DVPDDEEYVPSVLYGCTCDGVDVINHN T0547 497 :LFLHDVDVEK 2nvaA 334 :VALPELHIGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAI 2nvaA 344 :WVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 21 number of extra gaps= 0 total=12695 Will force an alignment to be made, even if fragment is small Number of alignments=577 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)I538 because last residue in template chain is (2nvaA)I372 T0547 30 :AIIDIVKELRD 2nvaA 4 :VVNNILKAHPH T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2nvaA 15 :QTKSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFA T0547 133 :GFKDRELINIGF 2nvaA 92 :TMKTIDDLIFAK T0547 148 :EMGHN 2nvaA 104 :DQGVD T0547 154 :TLTIEGLNELEAIIDIAKERF 2nvaA 109 :IATFDSSFELDKIHTYHPNCK T0547 180 :IGLRVRLHS 2nvaA 130 :MILRIRCDD T0547 190 :GVGIWAKSG 2nvaA 139 :PNATVQLGN T0547 203 :KFGLTSTELIEAVNLLKENK 2nvaA 148 :KFGANEDEIRHLLEYAKQLD T0547 224 :LE 2nvaA 168 :IE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 170 :VIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 294 :EYANDVVFILKNIAE 2nvaA 229 :YMSDYINDAIKDFFP T0547 312 :DLEPDIFIESGRFVAANHAVLIAPVLELFS 2nvaA 244 :EDTVTIVAEPGRFFAEHYSVLATQVIGKRV T0547 436 :VQER 2nvaA 274 :RDGL T0547 440 :YLVNFSLFQSMPDFW 2nvaA 280 :YFFNESTYGGFSNVI T0547 456 :LEQNFPIMPL 2nvaA 295 :FEKSVPTPQL T0547 466 :DRLDEEPTRSASIWDITCDSDGEISYS 2nvaA 307 :DVPDDEEYVPSVLYGCTCDGVDVINHN T0547 497 :LFLHDVDVEK 2nvaA 334 :VALPELHIGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAI 2nvaA 344 :WVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 21 number of extra gaps= 0 total=12716 Will force an alignment to be made, even if fragment is small Number of alignments=578 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)I538 because last residue in template chain is (2nvaA)I372 T0547 1 :MM 2nvaA 1 :MN T0547 31 :IIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2nvaA 3 :SVVNNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 40 :RVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYN 2nvaA 64 :VNFDCASSSEIKKVIQIG T0547 124 :NEGAPITVNGFKDRELINI 2nvaA 83 :SPSRIIFAHTMKTIDDLIF T0547 146 :AAEMGH 2nvaA 102 :AKDQGV T0547 153 :ITLTIEGLNELEAIIDIAK 2nvaA 108 :DIATFDSSFELDKIHTYHP T0547 173 :RFKPKPNIGLRVR 2nvaA 127 :NCKMILRIRCDDP T0547 195 :AKSGGINSKFGLTSTELIEAVNLLKENK 2nvaA 140 :NATVQLGNKFGANEDEIRHLLEYAKQLD T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 168 :IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EKSRNYTL 2nvaA 227 :STYMSDYI T0547 306 :IAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFS 2nvaA 238 :IKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRV T0547 434 :DEVQERYLVNFSLFQSMPDFWGLEQNFPIMPL 2nvaA 274 :RDGLYEYFFNESTYGGFSNVIFEKSVPTPQLL T0547 466 :DRLDEEPTRSASIWDITCDSDGEISYSKDKP 2nvaA 307 :DVPDDEEYVPSVLYGCTCDGVDVINHNVALP T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAI 2nvaA 338 :ELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 16 number of extra gaps= 0 total=12732 Will force an alignment to be made, even if fragment is small Number of alignments=579 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)I538 because last residue in template chain is (2nvaA)I372 T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 2nvaA 16 :TKSFYVSSPKIVEDLIDQWTILFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 40 :RVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYN 2nvaA 64 :VNFDCASSSEIKKVIQIG T0547 124 :NEGAPITVNGFKDRELINI 2nvaA 83 :SPSRIIFAHTMKTIDDLIF T0547 146 :AAEMGH 2nvaA 102 :AKDQGV T0547 153 :ITLTIEGLNELEAIIDIAK 2nvaA 108 :DIATFDSSFELDKIHTYHP T0547 173 :RFKPKPNIGLRVR 2nvaA 127 :NCKMILRIRCDDP T0547 195 :AKSGGINSKFGLTSTELIEAVNLLKENK 2nvaA 140 :NATVQLGNKFGANEDEIRHLLEYAKQLD T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 168 :IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EKSRNYTL 2nvaA 227 :STYMSDYI T0547 306 :IAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFS 2nvaA 238 :IKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRV T0547 434 :DEVQERYLVNFSLFQSMPDFWGLEQNFPIMPL 2nvaA 274 :RDGLYEYFFNESTYGGFSNVIFEKSVPTPQLL T0547 466 :DRLDEEPTRSASIWDITCDSDGEISYSKDKP 2nvaA 307 :DVPDDEEYVPSVLYGCTCDGVDVINHNVALP T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAI 2nvaA 338 :ELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 15 number of extra gaps= 0 total=12747 Will force an alignment to be made, even if fragment is small Number of alignments=580 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)D434 because last residue in template chain is (2nvaA)I372 T0547 1 :MMDY 2nvaA 1 :MNSV T0547 25 :YEKKP 2nvaA 5 :VNNIL T0547 38 :LRDDGYKGPLLLRFPHLIQKQIENIYGNF 2nvaA 10 :KAHPHQTKSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKT T0547 139 :LINIGF 2nvaA 96 :IDDLIF T0547 146 :AAEMGHNI 2nvaA 102 :AKDQGVDI T0547 155 :LTIEGLNELEAIIDIAKE 2nvaA 110 :ATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVG 2nvaA 128 :CKMILRIRCDDPNAT T0547 198 :GGINSKFGLTSTELIEAVNLLKENKL 2nvaA 143 :VQLGNKFGANEDEIRHLLEYAKQLDI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 169 :EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 287 :SR 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDG T0547 346 :ENKLILKKQNPKLIDE 2nvaA 277 :LYEYFFNESTYGGFSN T0547 362 :LYDLYKSIKPSNAL 2nvaA 294 :IFEKSVPTPQLLRD T0547 376 :EYLHDSIDHLESILTLFDLGYVD 2nvaA 311 :DEEYVPSVLYGCTCDGVDVINHN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFG T0547 429 :LLAIQ 2nvaA 367 :YDVYY Number of specific fragments extracted= 20 number of extra gaps= 0 total=12767 Will force an alignment to be made, even if fragment is small Number of alignments=581 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)K36 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)Q433 because last residue in template chain is (2nvaA)I372 T0547 37 :ELRDD 2nvaA 2 :NSVVN T0547 42 :GYK 2nvaA 13 :PHQ T0547 45 :GPLLLRFPHLIQKQIENIYGNF 2nvaA 17 :KSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKNV T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2nvaA 65 :NFDCASSSEIKKVIQIGVSPSRIIFAHTMKTI T0547 140 :INIGF 2nvaA 97 :DDLIF T0547 146 :AAEMGHNI 2nvaA 102 :AKDQGVDI T0547 155 :LTIEGLNELEAIIDIAKE 2nvaA 110 :ATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVGIW 2nvaA 128 :CKMILRIRCDDPNATVQ T0547 200 :INSKFGLTSTELIEAVNLLKENKL 2nvaA 145 :LGNKFGANEDEIRHLLEYAKQLDI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 169 :EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 287 :SR 2nvaA 227 :ST T0547 294 :EYANDVVFILKNI 2nvaA 229 :YMSDYINDAIKDF T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2nvaA 242 :FPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDG T0547 346 :ENKLILKKQNPKLIDE 2nvaA 277 :LYEYFFNESTYGGFSN T0547 362 :LYDLYK 2nvaA 294 :IFEKSV T0547 369 :IKPSNALEYLHD 2nvaA 300 :PTPQLLRDVPDD T0547 381 :SIDHLESILTLFDLGYVD 2nvaA 316 :PSVLYGCTCDGVDVINHN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFN T0547 426 :PADLLAI 2nvaA 365 :GEYDVYY Number of specific fragments extracted= 21 number of extra gaps= 0 total=12788 Will force an alignment to be made, even if fragment is small Number of alignments=582 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)Q433 because last residue in template chain is (2nvaA)I372 T0547 1 :M 2nvaA 1 :M T0547 17 :K 2nvaA 2 :N T0547 29 :PAIIDIVKEL 2nvaA 3 :SVVNNILKAH T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNF 2nvaA 13 :PHQTKSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTI T0547 140 :INIGF 2nvaA 97 :DDLIF T0547 146 :AAEMGHNI 2nvaA 102 :AKDQGVDI T0547 155 :LTIEGLNELEAIIDIAKE 2nvaA 110 :ATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLH 2nvaA 128 :CKMILRIRCD T0547 188 :SAGV 2nvaA 139 :PNAT T0547 195 :AKSG 2nvaA 143 :VQLG T0547 202 :SKFGLTSTELIEAVNLLKENKL 2nvaA 147 :NKFGANEDEIRHLLEYAKQLDI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 169 :EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 287 :SR 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDG T0547 346 :ENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHD 2nvaA 277 :LYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDD T0547 381 :SIDHLESILTLFDLGYVD 2nvaA 316 :PSVLYGCTCDGVDVINHN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFG T0547 429 :LLAI 2nvaA 368 :DVYY Number of specific fragments extracted= 22 number of extra gaps= 0 total=12810 Will force an alignment to be made, even if fragment is small Number of alignments=583 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)K36 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)Q433 because last residue in template chain is (2nvaA)I372 T0547 37 :ELRDD 2nvaA 2 :NSVVN T0547 42 :GYK 2nvaA 13 :PHQ T0547 45 :GPLLLRFPHLIQKQIENIYGNF 2nvaA 17 :KSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKNV T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2nvaA 65 :NFDCASSSEIKKVIQIGVSPSRIIFAHTMKTI T0547 140 :INIGF 2nvaA 97 :DDLIF T0547 146 :AAEMGHNI 2nvaA 102 :AKDQGVDI T0547 155 :LTIEGLNELEAIIDIAKE 2nvaA 110 :ATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVGIW 2nvaA 128 :CKMILRIRCDDPNATVQ T0547 200 :INSKFGLTSTELIEAVNLLKENKL 2nvaA 145 :LGNKFGANEDEIRHLLEYAKQLDI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 169 :EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 287 :SR 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIA 2nvaA 229 :YMSDYINDAIKDFF T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2nvaA 243 :PEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDG T0547 346 :ENKLILKKQNPKLIDE 2nvaA 277 :LYEYFFNESTYGGFSN T0547 362 :LYDLYK 2nvaA 294 :IFEKSV T0547 369 :IKPSNALE 2nvaA 300 :PTPQLLRD T0547 377 :YLHD 2nvaA 309 :PDDE T0547 381 :SIDHLESILTLFDLGYVD 2nvaA 316 :PSVLYGCTCDGVDVINHN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFN T0547 426 :PADLLAI 2nvaA 365 :GEYDVYY Number of specific fragments extracted= 22 number of extra gaps= 0 total=12832 Will force an alignment to be made, even if fragment is small Number of alignments=584 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)I31 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 32 :IDIVKELRD 2nvaA 2 :NSVVNNILK T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 2nvaA 14 :HQTKSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTI T0547 140 :INIGF 2nvaA 97 :DDLIF T0547 146 :AAEMGHNI 2nvaA 102 :AKDQGVDI T0547 155 :LTIEGLNELEAIIDIAKE 2nvaA 110 :ATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLH 2nvaA 128 :CKMILRIRCD T0547 188 :SAGVGI 2nvaA 139 :PNATVQ T0547 200 :INSKFGLTSTELIEAVNLLKENKL 2nvaA 145 :LGNKFGANEDEIRHLLEYAKQLDI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 169 :EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 287 :SR 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDG T0547 346 :ENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHD 2nvaA 277 :LYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDD T0547 381 :SIDHLESILTLFDLGYVD 2nvaA 316 :PSVLYGCTCDGVDVINHN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFG T0547 479 :WDIT 2nvaA 368 :DVYY Number of specific fragments extracted= 19 number of extra gaps= 0 total=12851 Will force an alignment to be made, even if fragment is small Number of alignments=585 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 1 :M 2nvaA 1 :M T0547 33 :DIVKELRDD 2nvaA 2 :NSVVNNILK T0547 42 :GYKG 2nvaA 13 :PHQT T0547 46 :PLLLRFPHLIQKQIENIYGNF 2nvaA 18 :SFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKNV T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2nvaA 65 :NFDCASSSEIKKVIQIGVSPSRIIFAHTMKTI T0547 140 :INIGF 2nvaA 97 :DDLIF T0547 146 :AAEMGHNI 2nvaA 102 :AKDQGVDI T0547 155 :LTIEGLNELEAIIDIAKE 2nvaA 110 :ATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVGIW 2nvaA 128 :CKMILRIRCDDPNATVQ T0547 200 :INSKFGLTSTELIEAVNLLKENKL 2nvaA 145 :LGNKFGANEDEIRHLLEYAKQLDI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 169 :EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 287 :SR 2nvaA 227 :ST T0547 294 :EYANDVVFILKNI 2nvaA 229 :YMSDYINDAIKDF T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2nvaA 242 :FPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDG T0547 346 :ENKLILKKQNPKLIDE 2nvaA 277 :LYEYFFNESTYGGFSN T0547 362 :LYDLYK 2nvaA 294 :IFEKSV T0547 369 :IKPSNALEYLHD 2nvaA 300 :PTPQLLRDVPDD T0547 381 :SIDHLESILTLFDLGYVD 2nvaA 316 :PSVLYGCTCDGVDVINHN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFG T0547 429 :LLAI 2nvaA 368 :DVYY Number of specific fragments extracted= 22 number of extra gaps= 0 total=12873 Will force an alignment to be made, even if fragment is small Number of alignments=586 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 45 :GPLLLRFPHLIQKQIENIYGNF 2nvaA 17 :KSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKT T0547 139 :LINIGF 2nvaA 96 :IDDLIF T0547 146 :AAEMGHNI 2nvaA 102 :AKDQGVDI T0547 155 :LTIEGLNELEAIIDIAKE 2nvaA 110 :ATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVG 2nvaA 128 :CKMILRIRCDDPNAT T0547 198 :GGINSKFGLTSTELIEAVNLLKENKL 2nvaA 143 :VQLGNKFGANEDEIRHLLEYAKQLDI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 169 :EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 287 :SR 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDG T0547 346 :ENKLILKKQNPKLIDE 2nvaA 277 :LYEYFFNESTYGGFSN T0547 362 :LYDLYKSIKPSNAL 2nvaA 294 :IFEKSVPTPQLLRD T0547 376 :EYLHDSIDHLESILTLFDLGYVD 2nvaA 311 :DEEYVPSVLYGCTCDGVDVINHN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFG T0547 429 :LLA 2nvaA 367 :YDV Number of specific fragments extracted= 18 number of extra gaps= 0 total=12891 Will force an alignment to be made, even if fragment is small Number of alignments=587 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)Q433 because last residue in template chain is (2nvaA)I372 T0547 36 :KELRDD 2nvaA 5 :VNNILK T0547 42 :GYK 2nvaA 13 :PHQ T0547 45 :GPLLLRFPHLIQKQIENIYGNF 2nvaA 17 :KSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKNV T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2nvaA 65 :NFDCASSSEIKKVIQIGVSPSRIIFAHTMKTI T0547 140 :INIGF 2nvaA 97 :DDLIF T0547 146 :AAEMGHNI 2nvaA 102 :AKDQGVDI T0547 155 :LTIEGLNELEAIIDIAKE 2nvaA 110 :ATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVGIW 2nvaA 128 :CKMILRIRCDDPNATVQ T0547 200 :INSKFGLTSTELIEAVNLLKENKL 2nvaA 145 :LGNKFGANEDEIRHLLEYAKQLDI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 169 :EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 287 :SR 2nvaA 227 :ST T0547 294 :EYANDVVFILKNI 2nvaA 229 :YMSDYINDAIKDF T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2nvaA 242 :FPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDG T0547 346 :ENKLILKKQNPKLIDE 2nvaA 277 :LYEYFFNESTYGGFSN T0547 362 :LYDLYK 2nvaA 294 :IFEKSV T0547 369 :IKPSNALEYLHD 2nvaA 300 :PTPQLLRDVPDD T0547 381 :SIDHLESILTLFDLGYVD 2nvaA 316 :PSVLYGCTCDGVDVINHN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFN T0547 426 :PADLLAI 2nvaA 365 :GEYDVYY Number of specific fragments extracted= 21 number of extra gaps= 0 total=12912 Will force an alignment to be made, even if fragment is small Number of alignments=588 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 32 :IDIV 2nvaA 6 :NNIL T0547 38 :LRDDGYKGPLLLRFPHLIQKQIENIYGNF 2nvaA 10 :KAHPHQTKSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTI T0547 140 :INIGF 2nvaA 97 :DDLIF T0547 146 :AAEMGHNI 2nvaA 102 :AKDQGVDI T0547 155 :LTIEGLNELEAIIDIAKE 2nvaA 110 :ATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLH 2nvaA 128 :CKMILRIRCD T0547 188 :SAGV 2nvaA 139 :PNAT T0547 195 :AKSG 2nvaA 143 :VQLG T0547 202 :SKFGLTSTELIEAVNLLKENKL 2nvaA 147 :NKFGANEDEIRHLLEYAKQLDI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 169 :EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 287 :SR 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDG T0547 346 :ENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHD 2nvaA 277 :LYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDD T0547 381 :SIDHLESILTLFDLGYVD 2nvaA 316 :PSVLYGCTCDGVDVINHN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFG T0547 429 :LLAI 2nvaA 368 :DVYY Number of specific fragments extracted= 20 number of extra gaps= 0 total=12932 Will force an alignment to be made, even if fragment is small Number of alignments=589 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)Q433 because last residue in template chain is (2nvaA)I372 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2nvaA 16 :TKSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKNV T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2nvaA 65 :NFDCASSSEIKKVIQIGVSPSRIIFAHTMKTI T0547 140 :INIGF 2nvaA 97 :DDLIF T0547 146 :AAEMGHNI 2nvaA 102 :AKDQGVDI T0547 155 :LTIEGLNELEAIIDIAKE 2nvaA 110 :ATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVGIW 2nvaA 128 :CKMILRIRCDDPNATVQ T0547 200 :INSKFGLTSTELIEAVNLLKENKL 2nvaA 145 :LGNKFGANEDEIRHLLEYAKQLDI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 169 :EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 287 :SR 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIA 2nvaA 229 :YMSDYINDAIKDFF T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2nvaA 243 :PEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDG T0547 346 :ENKLILKKQNPKLIDE 2nvaA 277 :LYEYFFNESTYGGFSN T0547 362 :LYDLYK 2nvaA 294 :IFEKSV T0547 369 :IKPSNALE 2nvaA 300 :PTPQLLRD T0547 377 :YLHD 2nvaA 309 :PDDE T0547 381 :SIDHLESILTLFDLGYVD 2nvaA 316 :PSVLYGCTCDGVDVINHN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFN T0547 426 :PADLLAI 2nvaA 365 :GEYDVYY Number of specific fragments extracted= 20 number of extra gaps= 0 total=12952 Will force an alignment to be made, even if fragment is small Number of alignments=590 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2nvaA 7 :NILKAHPHQTKSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTI T0547 140 :INIGF 2nvaA 97 :DDLIF T0547 146 :AAEMGHNI 2nvaA 102 :AKDQGVDI T0547 155 :LTIEGLNELEAIIDIAKE 2nvaA 110 :ATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLH 2nvaA 128 :CKMILRIRCD T0547 188 :SAGVGI 2nvaA 139 :PNATVQ T0547 200 :INSKFGLTSTELIEAVNLLKENKL 2nvaA 145 :LGNKFGANEDEIRHLLEYAKQLDI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 169 :EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 287 :SR 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDG T0547 346 :ENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHD 2nvaA 277 :LYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDD T0547 381 :SIDHLESILTLFDLGYVD 2nvaA 316 :PSVLYGCTCDGVDVINHN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFG Number of specific fragments extracted= 17 number of extra gaps= 0 total=12969 Will force an alignment to be made, even if fragment is small Number of alignments=591 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 36 :KELRDD 2nvaA 5 :VNNILK T0547 42 :GYKG 2nvaA 13 :PHQT T0547 46 :PLLLRFPHLIQKQIENIYGNF 2nvaA 18 :SFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKNV T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2nvaA 65 :NFDCASSSEIKKVIQIGVSPSRIIFAHTMKTI T0547 140 :INIGF 2nvaA 97 :DDLIF T0547 146 :AAEMGHNI 2nvaA 102 :AKDQGVDI T0547 155 :LTIEGLNELEAIIDIAKE 2nvaA 110 :ATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVGIW 2nvaA 128 :CKMILRIRCDDPNATVQ T0547 200 :INSKFGLTSTELIEAVNLLKENKL 2nvaA 145 :LGNKFGANEDEIRHLLEYAKQLDI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 169 :EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 287 :SR 2nvaA 227 :ST T0547 294 :EYANDVVFILKNI 2nvaA 229 :YMSDYINDAIKDF T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2nvaA 242 :FPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDG T0547 346 :ENKLILKKQNPKLIDE 2nvaA 277 :LYEYFFNESTYGGFSN T0547 362 :LYDLYK 2nvaA 294 :IFEKSV T0547 369 :IKPSNALEYLHD 2nvaA 300 :PTPQLLRDVPDD T0547 381 :SIDHLESILTLFDLGYVD 2nvaA 316 :PSVLYGCTCDGVDVINHN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFG Number of specific fragments extracted= 20 number of extra gaps= 0 total=12989 Will force an alignment to be made, even if fragment is small Number of alignments=592 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)I31 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)E435 because last residue in template chain is (2nvaA)I372 T0547 32 :IDIVKELRDD 2nvaA 2 :NSVVNNILKA T0547 42 :GYKG 2nvaA 13 :PHQT T0547 46 :PLLLRFPHLIQKQIENIYGNF 2nvaA 18 :SFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 148 :EMGHNIT 2nvaA 104 :DQGVDIA T0547 156 :TIEGLNELEAIIDIAKE 2nvaA 111 :TFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGV 2nvaA 128 :CKMILRIRCDDPNA T0547 197 :SGGINSKFGLTSTELIEAVNLLKENK 2nvaA 142 :TVQLGNKFGANEDEIRHLLEYAKQLD T0547 224 :LEQFT 2nvaA 168 :IEVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 173 :ISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 295 :Y 2nvaA 229 :Y T0547 296 :ANDVVFILKNIAEQKKD 2nvaA 231 :SDYINDAIKDFFPEDTV T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQEYAE 2nvaA 248 :TIVAEPGRFFAEHYSVLATQVIGKRVRDGLY T0547 348 :KLILKK 2nvaA 279 :EYFFNE T0547 354 :QNPKLIDELYDLYKSI 2nvaA 286 :TYGGFSNVIFEKSVPT T0547 370 :KPSNALE 2nvaA 303 :QLLRDVP T0547 377 :YLHDSIDHLESILTLFDLGYV 2nvaA 315 :VPSVLYGCTCDGVDVINHNVA T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 22 number of extra gaps= 0 total=13011 Will force an alignment to be made, even if fragment is small Number of alignments=593 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)E435 because last residue in template chain is (2nvaA)I372 T0547 28 :KPAIIDIVKE 2nvaA 2 :NSVVNNILKA T0547 43 :YKG 2nvaA 12 :HPH T0547 46 :PLLLRFPHLIQKQIENIYGNF 2nvaA 18 :SFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKNV T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2nvaA 65 :NFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 148 :EMGHNIT 2nvaA 104 :DQGVDIA T0547 156 :TIEGLNELEAIIDIAKE 2nvaA 111 :TFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGV 2nvaA 128 :CKMILRIRCDDPNA T0547 197 :SGGINSKFGLTSTELIEAVNLLKENK 2nvaA 142 :TVQLGNKFGANEDEIRHLLEYAKQLD T0547 224 :LEQFT 2nvaA 168 :IEVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 173 :ISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 294 :EYANDVVFILKNI 2nvaA 229 :YMSDYINDAIKDF T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2nvaA 242 :FPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLY T0547 348 :KLILKK 2nvaA 279 :EYFFNE T0547 354 :QNPKLIDELYDLYKSIKPS 2nvaA 286 :TYGGFSNVIFEKSVPTPQL T0547 375 :LE 2nvaA 305 :LR T0547 377 :YLHDSIDHLESILTLFDLGYV 2nvaA 315 :VPSVLYGCTCDGVDVINHNVA T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 21 number of extra gaps= 0 total=13032 Will force an alignment to be made, even if fragment is small Number of alignments=594 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)E435 because last residue in template chain is (2nvaA)I372 T0547 28 :KPAIIDIVKE 2nvaA 2 :NSVVNNILKA T0547 43 :YKG 2nvaA 12 :HPH T0547 46 :PLLLRFPHLIQKQIENIYGNF 2nvaA 18 :SFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 148 :EMGHNIT 2nvaA 104 :DQGVDIA T0547 156 :TIEGLNELEAIIDIAKE 2nvaA 111 :TFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVGIWAKS 2nvaA 128 :CKMILRIRCDDPNATVQLGN T0547 203 :KFGLTSTELIEAVNLLKENK 2nvaA 148 :KFGANEDEIRHLLEYAKQLD T0547 224 :LEQFT 2nvaA 168 :IEVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 173 :ISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLY T0547 348 :KLILKK 2nvaA 279 :EYFFNE T0547 354 :QNPKLIDELY 2nvaA 286 :TYGGFSNVIF T0547 364 :DLYKSI 2nvaA 297 :KSVPTP T0547 370 :KPS 2nvaA 307 :DVP T0547 377 :YLHDSIDHLESILTLFDLGY 2nvaA 315 :VPSVLYGCTCDGVDVINHNV T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 2nvaA 335 :ALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 22 number of extra gaps= 0 total=13054 Will force an alignment to be made, even if fragment is small Number of alignments=595 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)E435 because last residue in template chain is (2nvaA)I372 T0547 28 :KPAIIDIVKE 2nvaA 2 :NSVVNNILKA T0547 43 :YKG 2nvaA 12 :HPH T0547 46 :PLLLRFPHLIQKQIENIYGNF 2nvaA 18 :SFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKNV T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2nvaA 65 :NFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 148 :EMGHNIT 2nvaA 104 :DQGVDIA T0547 156 :TIEGLNELEAIIDIAKE 2nvaA 111 :TFDSSFELDKIHTYHPN T0547 174 :FKPKPNIGLRV 2nvaA 128 :CKMILRIRCDD T0547 187 :HSAGV 2nvaA 139 :PNATV T0547 199 :GINSKFGLTSTELIEAVNLLKENK 2nvaA 144 :QLGNKFGANEDEIRHLLEYAKQLD T0547 224 :LEQFT 2nvaA 168 :IEVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 173 :ISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLY T0547 348 :KLILKK 2nvaA 279 :EYFFNE T0547 354 :QNPKLIDELYDLYKSI 2nvaA 286 :TYGGFSNVIFEKSVPT T0547 370 :KPSN 2nvaA 308 :VPDD T0547 377 :YLHDSIDHLESILTLFDLGYV 2nvaA 315 :VPSVLYGCTCDGVDVINHNVA T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 22 number of extra gaps= 0 total=13076 Will force an alignment to be made, even if fragment is small Number of alignments=596 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)E435 because last residue in template chain is (2nvaA)I372 T0547 28 :KPAIIDIVKE 2nvaA 2 :NSVVNNILKA T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNF 2nvaA 12 :HPHQTKSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 148 :EMGHNIT 2nvaA 104 :DQGVDIA T0547 156 :TIEGLNELEAIIDIAKE 2nvaA 111 :TFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGV 2nvaA 128 :CKMILRIRCDDPNA T0547 197 :SGGINSKFGLTSTELIEAVNLLKENK 2nvaA 142 :TVQLGNKFGANEDEIRHLLEYAKQLD T0547 224 :LEQFT 2nvaA 168 :IEVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 173 :ISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLY T0547 348 :KLILKK 2nvaA 279 :EYFFNE T0547 354 :QNPKLID 2nvaA 286 :TYGGFSN T0547 362 :LYDLYKSI 2nvaA 293 :VIFEKSVP T0547 370 :KPSNALE 2nvaA 307 :DVPDDEE T0547 377 :YLHDSIDHLESILTLFDLGY 2nvaA 315 :VPSVLYGCTCDGVDVINHNV T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 2nvaA 335 :ALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 21 number of extra gaps= 0 total=13097 Will force an alignment to be made, even if fragment is small Number of alignments=597 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)K27 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)E435 because last residue in template chain is (2nvaA)I372 T0547 28 :KPAIIDIVKE 2nvaA 2 :NSVVNNILKA T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNF 2nvaA 12 :HPHQTKSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKNV T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2nvaA 65 :NFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 148 :EMGHNIT 2nvaA 104 :DQGVDIA T0547 156 :TIEGLNELEAIIDIAKE 2nvaA 111 :TFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGV 2nvaA 128 :CKMILRIRCDDPNA T0547 197 :SGGINSKFGLTSTELIEAVNLLKENK 2nvaA 142 :TVQLGNKFGANEDEIRHLLEYAKQLD T0547 224 :LEQFT 2nvaA 168 :IEVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 173 :ISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIA 2nvaA 229 :YMSDYINDAIKDFF T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2nvaA 243 :PEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLY T0547 348 :KLILKK 2nvaA 279 :EYFFNE T0547 354 :QNPKLIDELYDLYKSI 2nvaA 286 :TYGGFSNVIFEKSVPT T0547 370 :KPSNAL 2nvaA 308 :VPDDEE T0547 377 :YLHDSIDHLESILTLFDLGYV 2nvaA 315 :VPSVLYGCTCDGVDVINHNVA T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 20 number of extra gaps= 0 total=13117 Will force an alignment to be made, even if fragment is small Number of alignments=598 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 45 :GPLLLRFPHLIQKQIENIYGNF 2nvaA 17 :KSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 148 :EMGHNIT 2nvaA 104 :DQGVDIA T0547 156 :TIEGLNELEAIIDIAKE 2nvaA 111 :TFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGV 2nvaA 128 :CKMILRIRCDDPNA T0547 197 :SGGINSKFGLTSTELIEAVNLLKENK 2nvaA 142 :TVQLGNKFGANEDEIRHLLEYAKQLD T0547 224 :LEQFT 2nvaA 168 :IEVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 173 :ISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 295 :Y 2nvaA 229 :Y T0547 296 :ANDVVFILKNIAEQKKD 2nvaA 231 :SDYINDAIKDFFPEDTV T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQEYAE 2nvaA 248 :TIVAEPGRFFAEHYSVLATQVIGKRVRDGLY T0547 348 :KLILKK 2nvaA 279 :EYFFNE T0547 354 :QNPKLIDELYDLYKSI 2nvaA 286 :TYGGFSNVIFEKSVPT T0547 370 :KPSNALE 2nvaA 303 :QLLRDVP T0547 377 :YLHDSIDHLESILTLFDLGYV 2nvaA 315 :VPSVLYGCTCDGVDVINHNVA T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 20 number of extra gaps= 0 total=13137 Will force an alignment to be made, even if fragment is small Number of alignments=599 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)E435 because last residue in template chain is (2nvaA)I372 T0547 29 :PAIIDIVKE 2nvaA 3 :SVVNNILKA T0547 43 :YKG 2nvaA 12 :HPH T0547 46 :PLLLRFPHLIQKQIENIYGNF 2nvaA 18 :SFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKNV T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2nvaA 65 :NFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 148 :EMGHNIT 2nvaA 104 :DQGVDIA T0547 156 :TIEGLNELEAIIDIAKE 2nvaA 111 :TFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGV 2nvaA 128 :CKMILRIRCDDPNA T0547 197 :SGGINSKFGLTSTELIEAVNLLKENK 2nvaA 142 :TVQLGNKFGANEDEIRHLLEYAKQLD T0547 224 :LEQFT 2nvaA 168 :IEVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 173 :ISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 294 :EYANDVVFILKNI 2nvaA 229 :YMSDYINDAIKDF T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2nvaA 242 :FPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLY T0547 348 :KLILKK 2nvaA 279 :EYFFNE T0547 354 :QNPKLIDELYDLYKSIKPS 2nvaA 286 :TYGGFSNVIFEKSVPTPQL T0547 375 :LE 2nvaA 305 :LR T0547 377 :YLHDSIDHLESILTLFDLGYV 2nvaA 315 :VPSVLYGCTCDGVDVINHNVA T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 21 number of extra gaps= 0 total=13158 Will force an alignment to be made, even if fragment is small Number of alignments=600 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)E435 because last residue in template chain is (2nvaA)I372 T0547 28 :KPAIIDIVKE 2nvaA 2 :NSVVNNILKA T0547 43 :YKG 2nvaA 12 :HPH T0547 46 :PLLLRFPHLIQKQIENIYGNF 2nvaA 18 :SFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 148 :EMGHNIT 2nvaA 104 :DQGVDIA T0547 156 :TIEGLNELEAIIDIAKE 2nvaA 111 :TFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVGIWAKS 2nvaA 128 :CKMILRIRCDDPNATVQLGN T0547 203 :KFGLTSTELIEAVNLLKENK 2nvaA 148 :KFGANEDEIRHLLEYAKQLD T0547 224 :LEQFT 2nvaA 168 :IEVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 173 :ISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLY T0547 348 :KLILKK 2nvaA 279 :EYFFNE T0547 354 :QNPKLIDELY 2nvaA 286 :TYGGFSNVIF T0547 364 :DLYKSI 2nvaA 297 :KSVPTP T0547 370 :KPS 2nvaA 307 :DVP T0547 377 :YLHDSIDHLESILTLFDLGY 2nvaA 315 :VPSVLYGCTCDGVDVINHNV T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 2nvaA 335 :ALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 22 number of extra gaps= 0 total=13180 Will force an alignment to be made, even if fragment is small Number of alignments=601 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)E435 because last residue in template chain is (2nvaA)I372 T0547 29 :PAIIDIVKE 2nvaA 3 :SVVNNILKA T0547 43 :YKG 2nvaA 12 :HPH T0547 46 :PLLLRFPHLIQKQIENIYGNF 2nvaA 18 :SFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKNV T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2nvaA 65 :NFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 148 :EMGHNIT 2nvaA 104 :DQGVDIA T0547 156 :TIEGLNELEAIIDIAKE 2nvaA 111 :TFDSSFELDKIHTYHPN T0547 174 :FKPKPNIGLRV 2nvaA 128 :CKMILRIRCDD T0547 187 :HSAGV 2nvaA 139 :PNATV T0547 199 :GINSKFGLTSTELIEAVNLLKENK 2nvaA 144 :QLGNKFGANEDEIRHLLEYAKQLD T0547 224 :LEQFT 2nvaA 168 :IEVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 173 :ISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLY T0547 348 :KLILKK 2nvaA 279 :EYFFNE T0547 354 :QNPKLIDELYDLYKSI 2nvaA 286 :TYGGFSNVIFEKSVPT T0547 370 :KPSN 2nvaA 308 :VPDD T0547 377 :YLHDSIDHLESILTLFDLGYV 2nvaA 315 :VPSVLYGCTCDGVDVINHNVA T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 22 number of extra gaps= 0 total=13202 Will force an alignment to be made, even if fragment is small Number of alignments=602 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 29 :PAIIDIVKE 2nvaA 3 :SVVNNILKA T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNF 2nvaA 12 :HPHQTKSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 148 :EMGHNIT 2nvaA 104 :DQGVDIA T0547 156 :TIEGLNELEAIIDIAKE 2nvaA 111 :TFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGV 2nvaA 128 :CKMILRIRCDDPNA T0547 197 :SGGINSKFGLTSTELIEAVNLLKENK 2nvaA 142 :TVQLGNKFGANEDEIRHLLEYAKQLD T0547 224 :LEQFT 2nvaA 168 :IEVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 173 :ISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIAEQ 2nvaA 229 :YMSDYINDAIKDFFPE T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2nvaA 245 :DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLY T0547 348 :KLILKK 2nvaA 279 :EYFFNE T0547 354 :QNPKLID 2nvaA 286 :TYGGFSN T0547 362 :LYDLYKSI 2nvaA 293 :VIFEKSVP T0547 370 :KPSNALE 2nvaA 307 :DVPDDEE T0547 377 :YLHDSIDHLESILTLFDLGY 2nvaA 315 :VPSVLYGCTCDGVDVINHNV T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQ 2nvaA 335 :ALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVY Number of specific fragments extracted= 21 number of extra gaps= 0 total=13223 Will force an alignment to be made, even if fragment is small Number of alignments=603 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 29 :PAIIDIVKE 2nvaA 3 :SVVNNILKA T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNF 2nvaA 12 :HPHQTKSFYVSSPKIVEDLIDQWTILF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2nvaA 39 :PRVTPHYAVKCNNDEVLLKTMCDKNV T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2nvaA 65 :NFDCASSSEIKKVIQIGVSPSRIIF T0547 132 :NGFKDRELINIGF 2nvaA 91 :HTMKTIDDLIFAK T0547 148 :EMGHNIT 2nvaA 104 :DQGVDIA T0547 156 :TIEGLNELEAIIDIAKE 2nvaA 111 :TFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGV 2nvaA 128 :CKMILRIRCDDPNA T0547 197 :SGGINSKFGLTSTELIEAVNLLKENK 2nvaA 142 :TVQLGNKFGANEDEIRHLLEYAKQLD T0547 224 :LEQFT 2nvaA 168 :IEVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2nvaA 173 :ISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH T0547 265 :NLKAINLGGGLAVEY 2nvaA 207 :KPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 294 :EYANDVVFILKNIA 2nvaA 229 :YMSDYINDAIKDFF T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2nvaA 243 :PEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLY T0547 348 :KLILKK 2nvaA 279 :EYFFNE T0547 354 :QNPKLIDELYDLYKSI 2nvaA 286 :TYGGFSNVIFEKSVPT T0547 370 :KPSNAL 2nvaA 308 :VPDDEE T0547 377 :YLHDSIDHLESILTLFDLGYV 2nvaA 315 :VPSVLYGCTCDGVDVINHNVA T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQ 2nvaA 336 :LPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVY Number of specific fragments extracted= 20 number of extra gaps= 0 total=13243 Will force an alignment to be made, even if fragment is small Number of alignments=604 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)V21 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)V436 because last residue in template chain is (2nvaA)I372 T0547 22 :CINYEKKPAIID 2nvaA 2 :NSVVNNILKAHP T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFN 2nvaA 14 :HQTKSFYVSSPKIVEDLIDQWTILFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 40 :RVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVD T0547 154 :TLTIEGLNELEAIIDIAKE 2nvaA 109 :IATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVG 2nvaA 128 :CKMILRIRCDDPNAT T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 2nvaA 143 :VQLGNKFGANEDEIRHLLEYAKQLD T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2nvaA 168 :IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISV T0547 263 :AKNLKAINLGGGLAVEY 2nvaA 205 :GHKPYILDIGGGLHADI T0547 285 :EKSR 2nvaA 227 :STYM T0547 293 :REYAN 2nvaA 231 :SDYIN T0547 304 :KNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2nvaA 236 :DAIKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2nvaA 308 :VPDDEEYVPSVLYGCTCDGVDVINHNVALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2nvaA 339 :LHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 14 number of extra gaps= 0 total=13257 Will force an alignment to be made, even if fragment is small Number of alignments=605 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)P29 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)V436 because last residue in template chain is (2nvaA)I372 T0547 30 :AIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2nvaA 2 :NSVVNNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 40 :RVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVD T0547 154 :TLTIEGLNELEAIIDIAKE 2nvaA 109 :IATFDSSFELDKIHTYHPN T0547 174 :FKPKPNIGLRVR 2nvaA 128 :CKMILRIRCDDP T0547 195 :AKSGGINSKFGLTSTELIEAVNLLKENK 2nvaA 140 :NATVQLGNKFGANEDEIRHLLEYAKQLD T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2nvaA 168 :IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISV T0547 263 :AKNLKAINLGGGLAVEY 2nvaA 205 :GHKPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 296 :ANDVVFI 2nvaA 229 :YMSDYIN T0547 304 :KNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2nvaA 236 :DAIKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2nvaA 308 :VPDDEEYVPSVLYGCTCDGVDVINHNVALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2nvaA 339 :LHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 13 number of extra gaps= 0 total=13270 Will force an alignment to be made, even if fragment is small Number of alignments=606 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)P29 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)V436 because last residue in template chain is (2nvaA)I372 T0547 30 :AIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2nvaA 2 :NSVVNNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 40 :RVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVD T0547 154 :TLTIEGLNELEAIIDIAKE 2nvaA 109 :IATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVG 2nvaA 128 :CKMILRIRCDDPNAT T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 2nvaA 143 :VQLGNKFGANEDEIRHLLEYAKQLD T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2nvaA 168 :IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISV T0547 263 :AKNLKAINLGGGLAVEY 2nvaA 205 :GHKPYILDIGGGLHADI T0547 283 :KNE 2nvaA 227 :STY T0547 295 :YANDVVFILKNI 2nvaA 230 :MSDYINDAIKDF T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2nvaA 242 :FPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2nvaA 308 :VPDDEEYVPSVLYGCTCDGVDVINHNVALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2nvaA 339 :LHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 13 number of extra gaps= 0 total=13283 Will force an alignment to be made, even if fragment is small Number of alignments=607 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)P29 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)V436 because last residue in template chain is (2nvaA)I372 T0547 30 :AIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2nvaA 2 :NSVVNNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 40 :RVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVD T0547 154 :TLTIEGLNELEAIIDIAKE 2nvaA 109 :IATFDSSFELDKIHTYHPN T0547 174 :FKPKPNIGLRVRLH 2nvaA 128 :CKMILRIRCDDPNA T0547 197 :SGGINSKFGLTSTELIEAVNLLKENK 2nvaA 142 :TVQLGNKFGANEDEIRHLLEYAKQLD T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2nvaA 168 :IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISV T0547 263 :AKNLKAINLGGGLAVEY 2nvaA 205 :GHKPYILDIGGGLHADI T0547 284 :NEKSR 2nvaA 227 :STYMS T0547 300 :VFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2nvaA 232 :DYINDAIKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2nvaA 308 :VPDDEEYVPSVLYGCTCDGVDVINHNVALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2nvaA 339 :LHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 12 number of extra gaps= 0 total=13295 Will force an alignment to be made, even if fragment is small Number of alignments=608 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)P29 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 30 :AIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2nvaA 2 :NSVVNNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 40 :RVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVD T0547 154 :TLTIEGLNELEAIIDIAKE 2nvaA 109 :IATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVG 2nvaA 128 :CKMILRIRCDDPNAT T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 2nvaA 143 :VQLGNKFGANEDEIRHLLEYAKQLD T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2nvaA 168 :IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISV T0547 263 :AKNLKAINLGGGLAVEY 2nvaA 205 :GHKPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 294 :EYANDVVFILKN 2nvaA 229 :YMSDYINDAIKD T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELY 2nvaA 241 :FFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIF T0547 367 :KSIKPS 2nvaA 296 :EKSVPT T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2nvaA 308 :VPDDEEYVPSVLYGCTCDGVDVINHNVALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLL 2nvaA 339 :LHIGDWVYFPSWGAYTNVLTTSFNGFGE T0547 607 :KSIGV 2nvaA 368 :DVYYI Number of specific fragments extracted= 15 number of extra gaps= 0 total=13310 Will force an alignment to be made, even if fragment is small Number of alignments=609 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)P29 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 30 :AIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2nvaA 2 :NSVVNNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 40 :RVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVD T0547 154 :TLTIEGLNELEAIIDIAKE 2nvaA 109 :IATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVG 2nvaA 128 :CKMILRIRCDDPNAT T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 2nvaA 143 :VQLGNKFGANEDEIRHLLEYAKQLD T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2nvaA 168 :IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISV T0547 263 :AKNLKAINLGGGLAVEY 2nvaA 205 :GHKPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 296 :AN 2nvaA 229 :YM T0547 299 :VVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2nvaA 231 :SDYINDAIKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2nvaA 308 :VPDDEEYVPSVLYGCTCDGVDVINHNVALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQ 2nvaA 339 :LHIGDWVYFPSWGAYTNVLTTSFNGFGEYDV T0547 609 :IGV 2nvaA 370 :YYI Number of specific fragments extracted= 14 number of extra gaps= 0 total=13324 Will force an alignment to be made, even if fragment is small Number of alignments=610 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 46 :PLLLRFPHLIQKQIENIYGNFN 2nvaA 18 :SFYVSSPKIVEDLIDQWTILFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 40 :RVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVD T0547 154 :TLTIEGLNELEAIIDIAKE 2nvaA 109 :IATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVG 2nvaA 128 :CKMILRIRCDDPNAT T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 2nvaA 143 :VQLGNKFGANEDEIRHLLEYAKQLD T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2nvaA 168 :IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISV T0547 263 :AKNLKAINLGGGLAVEY 2nvaA 205 :GHKPYILDIGGGLHADI T0547 285 :EKSR 2nvaA 227 :STYM T0547 293 :REYAN 2nvaA 231 :SDYIN T0547 304 :KNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2nvaA 236 :DAIKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2nvaA 308 :VPDDEEYVPSVLYGCTCDGVDVINHNVALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLA 2nvaA 339 :LHIGDWVYFPSWGAYTNVLTTSFNGFGEY Number of specific fragments extracted= 13 number of extra gaps= 0 total=13337 Will force an alignment to be made, even if fragment is small Number of alignments=611 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)V436 because last residue in template chain is (2nvaA)I372 T0547 31 :IIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2nvaA 3 :SVVNNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 40 :RVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVD T0547 154 :TLTIEGLNELEAIIDIAKE 2nvaA 109 :IATFDSSFELDKIHTYHPN T0547 174 :FKPKPNIGLRVR 2nvaA 128 :CKMILRIRCDDP T0547 195 :AKSGGINSKFGLTSTELIEAVNLLKENK 2nvaA 140 :NATVQLGNKFGANEDEIRHLLEYAKQLD T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2nvaA 168 :IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISV T0547 263 :AKNLKAINLGGGLAVEY 2nvaA 205 :GHKPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 296 :ANDVVFI 2nvaA 229 :YMSDYIN T0547 304 :KNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2nvaA 236 :DAIKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2nvaA 308 :VPDDEEYVPSVLYGCTCDGVDVINHNVALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2nvaA 339 :LHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 13 number of extra gaps= 0 total=13350 Will force an alignment to be made, even if fragment is small Number of alignments=612 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)V436 because last residue in template chain is (2nvaA)I372 T0547 38 :LRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2nvaA 10 :KAHPHQTKSFYVSSPKIVEDLIDQWTILFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 40 :RVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVD T0547 154 :TLTIEGLNELEAIIDIAKE 2nvaA 109 :IATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVG 2nvaA 128 :CKMILRIRCDDPNAT T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 2nvaA 143 :VQLGNKFGANEDEIRHLLEYAKQLD T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2nvaA 168 :IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISV T0547 263 :AKNLKAINLGGGLAVEY 2nvaA 205 :GHKPYILDIGGGLHADI T0547 283 :KNE 2nvaA 227 :STY T0547 295 :YANDVVFILKNI 2nvaA 230 :MSDYINDAIKDF T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2nvaA 242 :FPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2nvaA 308 :VPDDEEYVPSVLYGCTCDGVDVINHNVALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2nvaA 339 :LHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 13 number of extra gaps= 0 total=13363 Will force an alignment to be made, even if fragment is small Number of alignments=613 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 Warning: unaligning (T0547)V436 because last residue in template chain is (2nvaA)I372 T0547 31 :IIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2nvaA 3 :SVVNNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 40 :RVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVD T0547 154 :TLTIEGLNELEAIIDIAKE 2nvaA 109 :IATFDSSFELDKIHTYHPN T0547 174 :FKPKPNIGLRVRLH 2nvaA 128 :CKMILRIRCDDPNA T0547 197 :SGGINSKFGLTSTELIEAVNLLKENK 2nvaA 142 :TVQLGNKFGANEDEIRHLLEYAKQLD T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2nvaA 168 :IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISV T0547 263 :AKNLKAINLGGGLAVEY 2nvaA 205 :GHKPYILDIGGGLHADI T0547 284 :NEKSR 2nvaA 227 :STYMS T0547 300 :VFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2nvaA 232 :DYINDAIKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2nvaA 308 :VPDDEEYVPSVLYGCTCDGVDVINHNVALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2nvaA 339 :LHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY Number of specific fragments extracted= 12 number of extra gaps= 0 total=13375 Will force an alignment to be made, even if fragment is small Number of alignments=614 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 34 :IVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2nvaA 6 :NNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 40 :RVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVD T0547 154 :TLTIEGLNELEAIIDIAKE 2nvaA 109 :IATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVG 2nvaA 128 :CKMILRIRCDDPNAT T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 2nvaA 143 :VQLGNKFGANEDEIRHLLEYAKQLD T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2nvaA 168 :IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISV T0547 263 :AKNLKAINLGGGLAVEY 2nvaA 205 :GHKPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 294 :EYANDVVFILKN 2nvaA 229 :YMSDYINDAIKD T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELY 2nvaA 241 :FFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIF T0547 367 :KSIKPS 2nvaA 296 :EKSVPT T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2nvaA 308 :VPDDEEYVPSVLYGCTCDGVDVINHNVALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLL 2nvaA 339 :LHIGDWVYFPSWGAYTNVLTTSFNGFGE Number of specific fragments extracted= 14 number of extra gaps= 0 total=13389 Will force an alignment to be made, even if fragment is small Number of alignments=615 # 2nvaA read from all-align.a2m # found chain 2nvaA in training set Warning: unaligning (T0547)P29 because first residue in template chain is (2nvaA)M1 Warning: unaligning (T0547)S280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2nvaA)L226 Warning: unaligning (T0547)N284 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2nvaA)L226 T0547 30 :AIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2nvaA 2 :NSVVNNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2nvaA 40 :RVTPHYAVKCNNDEVLLKTMCDKN T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2nvaA 64 :VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVD T0547 154 :TLTIEGLNELEAIIDIAKE 2nvaA 109 :IATFDSSFELDKIHTYHPN T0547 178 :PNIGLRVRLHSAGVG 2nvaA 128 :CKMILRIRCDDPNAT T0547 198 :GGINSKFGLTSTELIEAVNLLKENK 2nvaA 143 :VQLGNKFGANEDEIRHLLEYAKQLD T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2nvaA 168 :IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISV T0547 263 :AKNLKAINLGGGLAVEY 2nvaA 205 :GHKPYILDIGGGLHADI T0547 285 :EK 2nvaA 227 :ST T0547 296 :AN 2nvaA 229 :YM T0547 299 :VVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2nvaA 231 :SDYINDAIKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2nvaA 308 :VPDDEEYVPSVLYGCTCDGVDVINHNVALP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLA 2nvaA 339 :LHIGDWVYFPSWGAYTNVLTTSFNGFGEY Number of specific fragments extracted= 13 number of extra gaps= 0 total=13402 Will force an alignment to be made, even if fragment is small Number of alignments=616 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)N443 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)F444 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)Y565 because last residue in template chain is (2o0tA)R447 T0547 1 :MMDYGIDIWGNENF 2o0tA 4 :LLHLAPNVWPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKEL 2o0tA 27 :AGIPLTQLAQEY T0547 44 :KGPLLLRFPHLIQKQIENIYGNFNK 2o0tA 39 :GTPLFVIDEDDFRSRCRETAAAFGS T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLH T0547 133 :GFKDRELIN 2o0tA 116 :NNKSVSELT T0547 145 :IAAEMGHN 2o0tA 125 :AAVKAGVG T0547 154 :TLTIEGLNELEAIIDIAKERFKP 2o0tA 133 :HIVVDSMTEIERLDAIAGEAGIV T0547 178 :PN 2o0tA 156 :QD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTSTE 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVAS T0547 211 :LIEAVNLLKENKLLE 2o0tA 192 :AMAAVRRVFATDHLR T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2o0tA 207 :LVGLHSHIGSQIFDVDGFELAAHRVIGLLRDV T0547 259 :RKMGA 2o0tA 240 :GEFGP T0547 264 :KNLKAINLGGGLAVEYSQFK 2o0tA 248 :AQIATVDLGGGLGISYLPSD T0547 288 :RNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2o0tA 268 :DPPPIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVK T0547 436 :V 2o0tA 326 :A T0547 437 :QERYLV 2o0tA 329 :HRRYVS T0547 445 :SLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEI 2o0tA 337 :GGMSDNIRTALYGAQYDVRLVSRVSDAPPVPARLVGKHCESGDII T0547 493 :KDKPLF 2o0tA 383 :RDTWVP T0547 500 :HDVDVEK 2o0tA 389 :DDIRPGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2o0tA 396 :LVAVAATGAYCYSLSSRYNMVGRPAVVAVH T0547 542 :EKGYEV 2o0tA 426 :AGNARL T0547 550 :IIEAQSILDTLEDLD 2o0tA 432 :VLRRETVDDLLSLEV Number of specific fragments extracted= 26 number of extra gaps= 3 total=13428 Will force an alignment to be made, even if fragment is small Number of alignments=617 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)N443 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)F444 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 T0547 2 :MDYGIDIWGNENF 2o0tA 5 :LHLAPNVWPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKEL 2o0tA 27 :AGIPLTQLAQEY T0547 44 :KGPLLLRFPHLIQKQIENIYGNFNK 2o0tA 39 :GTPLFVIDEDDFRSRCRETAAAFGS T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLH T0547 133 :GFKDRELIN 2o0tA 116 :NNKSVSELT T0547 145 :IAAEMGHN 2o0tA 125 :AAVKAGVG T0547 154 :TLTIEGLNELEAIIDIAKERFKP 2o0tA 133 :HIVVDSMTEIERLDAIAGEAGIV T0547 178 :PN 2o0tA 156 :QD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTSTE 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVAS T0547 211 :LIEAVNLLKENKLLE 2o0tA 192 :AMAAVRRVFATDHLR T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2o0tA 207 :LVGLHSHIGSQIFDVDGFELAAHRVIGLLRDV T0547 259 :RKMGA 2o0tA 240 :GEFGP T0547 264 :KNLKAINLGGGLAVEYSQFK 2o0tA 248 :AQIATVDLGGGLGISYLPSD T0547 288 :RNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2o0tA 268 :DPPPIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVK T0547 436 :V 2o0tA 326 :A T0547 437 :QERYLV 2o0tA 329 :HRRYVS T0547 445 :SLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEI 2o0tA 337 :GGMSDNIRTALYGAQYDVRLVSRVSDAPPVPARLVGKHCESGDII T0547 493 :KDKPLF 2o0tA 383 :RDTWVP T0547 500 :HDVDVEK 2o0tA 389 :DDIRPGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2o0tA 396 :LVAVAATGAYCYSLSSRYNMVGRPAVVAVH T0547 542 :EKGYEV 2o0tA 426 :AGNARL T0547 550 :IIEAQSILDTLEDLD 2o0tA 432 :VLRRETVDDLLSLEV Number of specific fragments extracted= 26 number of extra gaps= 3 total=13454 Will force an alignment to be made, even if fragment is small Number of alignments=618 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)V442 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)N443 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)Y565 because last residue in template chain is (2o0tA)R447 T0547 1 :MMDYGIDIWGNENF 2o0tA 4 :LLHLAPNVWPRNTT T0547 17 :KNGKVCIN 2o0tA 20 :EVGVVCIA T0547 28 :KPAIIDIVKEL 2o0tA 28 :GIPLTQLAQEY T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2o0tA 39 :GTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNG 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHG T0547 134 :FKDRELIN 2o0tA 117 :NKSVSELT T0547 145 :IAAEMGHNI 2o0tA 125 :AAVKAGVGH T0547 155 :LTIEGLNELEAIIDIAKER 2o0tA 134 :IVVDSMTEIERLDAIAGEA T0547 175 :KPKPN 2o0tA 153 :GIVQD T0547 182 :LRVRL 2o0tA 160 :VRLTV T0547 187 :HSAGVGIWAKSGGINSKFGLTST 2o0tA 166 :VEAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLE 2o0tA 191 :AAMAAVRRVFATDHLR T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2o0tA 207 :LVGLHSHIGSQIFDVDGFELAAHRVIGLLRDV T0547 259 :RKMGA 2o0tA 240 :GEFGP T0547 264 :KNLKAINLGGGLAVEYSQF 2o0tA 248 :AQIATVDLGGGLGISYLPS T0547 287 :SRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2o0tA 267 :DDPPPIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :E 2o0tA 327 :T T0547 436 :VQERYL 2o0tA 329 :HRRYVS T0547 444 :FSLFQ 2o0tA 337 :GGMSD T0547 450 :MPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEI 2o0tA 342 :NIRTALYGAQYDVRLVSRVSDAPPVPARLVGKHCESGDII T0547 493 :KDKPLF 2o0tA 383 :RDTWVP T0547 500 :HDVDVEK 2o0tA 389 :DDIRPGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2o0tA 396 :LVAVAATGAYCYSLSSRYNMVGRPAVVAVH T0547 542 :EKGYEV 2o0tA 426 :AGNARL T0547 550 :IIEAQSILDTLEDLD 2o0tA 432 :VLRRETVDDLLSLEV Number of specific fragments extracted= 27 number of extra gaps= 3 total=13481 Will force an alignment to be made, even if fragment is small Number of alignments=619 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)V442 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)N443 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 T0547 4 :YGIDIWGNENF 2o0tA 7 :LAPNVWPRNTT T0547 17 :KNGKVCIN 2o0tA 20 :EVGVVCIA T0547 28 :KPAIIDIVKEL 2o0tA 28 :GIPLTQLAQEY T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 2o0tA 39 :GTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNG 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHG T0547 134 :FKDRELIN 2o0tA 117 :NKSVSELT T0547 145 :IAAEMGHNI 2o0tA 125 :AAVKAGVGH T0547 155 :LTIEGLNELEAIIDIAKER 2o0tA 134 :IVVDSMTEIERLDAIAGEA T0547 175 :KPKPN 2o0tA 153 :GIVQD T0547 182 :LRVRL 2o0tA 160 :VRLTV T0547 187 :HSAGVGIWAKSGGINSKFGLTST 2o0tA 166 :VEAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLE 2o0tA 191 :AAMAAVRRVFATDHLR T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2o0tA 207 :LVGLHSHIGSQIFDVDGFELAAHRVIGLLRDV T0547 259 :RKMGA 2o0tA 240 :GEFGP T0547 264 :KNLKAINLGGGLAVEYSQF 2o0tA 248 :AQIATVDLGGGLGISYLPS T0547 287 :SRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2o0tA 267 :DDPPPIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :E 2o0tA 327 :T T0547 436 :VQERYL 2o0tA 329 :HRRYVS T0547 444 :FSLFQ 2o0tA 337 :GGMSD T0547 450 :MPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEI 2o0tA 342 :NIRTALYGAQYDVRLVSRVSDAPPVPARLVGKHCESGDII T0547 493 :KDKPLF 2o0tA 383 :RDTWVP T0547 500 :HDVDVEK 2o0tA 389 :DDIRPGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2o0tA 396 :LVAVAATGAYCYSLSSRYNMVGRPAVVAVH T0547 542 :EKGYEV 2o0tA 426 :AGNARL T0547 550 :IIEAQSILDTLEDLD 2o0tA 432 :VLRRETVDDLLSLEV Number of specific fragments extracted= 27 number of extra gaps= 3 total=13508 Will force an alignment to be made, even if fragment is small Number of alignments=620 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)N443 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)F444 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)E561 because last residue in template chain is (2o0tA)R447 T0547 8 :IWGNENFIIKNGKVC 2o0tA 3 :ELLHLAPNVWPRNTT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYP 2o0tA 63 :SGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAY 2o0tA 88 :LCLDVCTGGELAVALHA T0547 123 :NNEGAPITVNGFKDRELINIGFIAAE 2o0tA 106 :FPPERITLHGNNKSVSELTAAVKAGV T0547 153 :ITLTIEGLNELEAIIDIAKER 2o0tA 132 :GHIVVDSMTEIERLDAIAGEA T0547 175 :KPKPN 2o0tA 153 :GIVQD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATDH T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2o0tA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDV T0547 259 :RKMGAKNLKAINLGGGLAVEYSQF 2o0tA 243 :GPEKTAQIATVDLGGGLGISYLPS T0547 287 :SRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLI 2o0tA 267 :DDPPPIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAHR T0547 439 :RYLV 2o0tA 331 :RYVS T0547 445 :SLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSK 2o0tA 337 :GGMSDNIRTALYGAQYDVRLVSRVSDAPPVPARLVGKHCESGDIIVRDT T0547 506 :KENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTL 2o0tA 392 :RPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 16 number of extra gaps= 3 total=13524 Will force an alignment to be made, even if fragment is small Number of alignments=621 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)N443 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)F444 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 T0547 14 :FIIKNGKVC 2o0tA 9 :PNVWPRNTT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYP 2o0tA 63 :SGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAY 2o0tA 88 :LCLDVCTGGELAVALHA T0547 123 :NNEGAPITVNGFKDRELINIGFIAAE 2o0tA 106 :FPPERITLHGNNKSVSELTAAVKAGV T0547 153 :ITLTIEGLNELEAIIDIAKER 2o0tA 132 :GHIVVDSMTEIERLDAIAGEA T0547 175 :KPKPN 2o0tA 153 :GIVQD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATDH T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2o0tA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDV T0547 259 :RKMGAKNLKAINLGGGLAVEYSQF 2o0tA 243 :GPEKTAQIATVDLGGGLGISYLPS T0547 287 :SRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLI 2o0tA 267 :DDPPPIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAHR T0547 439 :RYLV 2o0tA 331 :RYVS T0547 445 :SLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSK 2o0tA 337 :GGMSDNIRTALYGAQYDVRLVSRVSDAPPVPARLVGKHCESGDIIVRDT T0547 506 :KENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGI 2o0tA 392 :RPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRE Number of specific fragments extracted= 16 number of extra gaps= 3 total=13540 Will force an alignment to be made, even if fragment is small Number of alignments=622 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)Y4 because first residue in template chain is (2o0tA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (2o0tA)R447 T0547 5 :GIDIWG 2o0tA 3 :ELLHLA T0547 14 :FIIKNGKVC 2o0tA 9 :PNVWPRNTT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYP 2o0tA 63 :SGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKS T0547 139 :LINIGF 2o0tA 120 :VSELTA T0547 146 :AAEMGHNI 2o0tA 126 :AVKAGVGH T0547 155 :LTIEGLNELEAIIDIAKE 2o0tA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 2o0tA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK 2o0tA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGP T0547 265 :NLKAINLGGGLAVEY 2o0tA 249 :QIATVDLGGGLGISY T0547 282 :FKNEKSR 2o0tA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 2o0tA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 2o0tA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNAL 2o0tA 347 :LYGAQYDVRLVSRV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 2o0tA 362 :DAPPVPARLVGKHCESGDIIVRD T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 2o0tA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 24 number of extra gaps= 3 total=13564 Will force an alignment to be made, even if fragment is small Number of alignments=623 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (2o0tA)R447 T0547 3 :DYGIDIWGNENF 2o0tA 6 :HLAPNVWPRNTT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLGK 2o0tA 74 :FLCSEVARWISEEGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2o0tA 89 :CLDVCTGGELAVALHASFPPERITLHGNNKSV T0547 140 :INIGF 2o0tA 121 :SELTA T0547 146 :AAEMGHNI 2o0tA 126 :AVKAGVGH T0547 155 :LTIEGLNELEAIIDIAKE 2o0tA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 2o0tA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2o0tA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGE T0547 262 :GA 2o0tA 243 :GP T0547 265 :NLKAINLGGGLAVEY 2o0tA 249 :QIATVDLGGGLGISY T0547 282 :FKNEKSR 2o0tA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 2o0tA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 2o0tA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNALE 2o0tA 347 :LYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYVD 2o0tA 363 :APPVPARLVGKHCESGDIIVRD T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 2o0tA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 24 number of extra gaps= 3 total=13588 Will force an alignment to be made, even if fragment is small Number of alignments=624 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)N11 because first residue in template chain is (2o0tA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (2o0tA)R447 T0547 12 :ENFIIKN 2o0tA 3 :ELLHLAP T0547 19 :GKVC 2o0tA 14 :RNTT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYP 2o0tA 63 :SGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSV T0547 140 :INIGF 2o0tA 121 :SELTA T0547 146 :AAEMGHNI 2o0tA 126 :AVKAGVGH T0547 155 :LTIEGLNELEAIIDIAKE 2o0tA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLE 2o0tA 191 :AAMAAVRRVFATDHLR T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK 2o0tA 207 :LVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGP T0547 265 :NLKAINLGGGLAVEY 2o0tA 249 :QIATVDLGGGLGISY T0547 282 :FKNEKSR 2o0tA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 2o0tA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 2o0tA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPS 2o0tA 347 :LYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRD T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPAD 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVG T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWG 2o0tA 420 :AVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 24 number of extra gaps= 3 total=13612 Will force an alignment to be made, even if fragment is small Number of alignments=625 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (2o0tA)R447 T0547 3 :DYGIDIWGNEN 2o0tA 6 :HLAPNVWPRNT T0547 22 :C 2o0tA 17 :T T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYP 2o0tA 63 :SGANVHYA T0547 88 :NQYPGFVKNLVKLGK 2o0tA 74 :FLCSEVARWISEEGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2o0tA 89 :CLDVCTGGELAVALHASFPPERITLHGNNKSV T0547 140 :INIGF 2o0tA 121 :SELTA T0547 146 :AAEMGHNI 2o0tA 126 :AVKAGVGH T0547 155 :LTIEGLNELEAIIDIAKE 2o0tA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLE 2o0tA 191 :AAMAAVRRVFATDHLR T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2o0tA 207 :LVGLHSHIGSQIFDVDGFELAAHRVIGLLRDV T0547 259 :RKMGAK 2o0tA 240 :GEFGPE T0547 265 :NLKAINLGGGLAVEY 2o0tA 249 :QIATVDLGGGLGISY T0547 282 :FKNEKSR 2o0tA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 2o0tA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 2o0tA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNALE 2o0tA 347 :LYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYVD 2o0tA 363 :APPVPARLVGKHCESGDIIVRD T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 2o0tA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 25 number of extra gaps= 3 total=13637 Will force an alignment to be made, even if fragment is small Number of alignments=626 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)N11 because first residue in template chain is (2o0tA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 T0547 12 :ENFIIKN 2o0tA 3 :ELLHLAP T0547 19 :GKVC 2o0tA 14 :RNTT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSV T0547 140 :INIGF 2o0tA 121 :SELTA T0547 146 :AAEMGHNI 2o0tA 126 :AVKAGVGH T0547 155 :LTIEGLNELEAIIDIAKE 2o0tA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 2o0tA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 2o0tA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGGLAVEY 2o0tA 247 :TAQIATVDLGGGLGISY T0547 282 :FKNEKSR 2o0tA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 2o0tA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 2o0tA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPS 2o0tA 347 :LYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2o0tA 388 :PDDIRPGDLVAVAATGAYCYSLSSRYNMVG T0547 429 :L 2o0tA 419 :P T0547 536 :AIISINEKGYEVEG 2o0tA 420 :AVVAVHAGNARLVL T0547 582 :KLVNDKQKK 2o0tA 434 :RRETVDDLL Number of specific fragments extracted= 25 number of extra gaps= 3 total=13662 Will force an alignment to be made, even if fragment is small Number of alignments=627 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)Y4 because first residue in template chain is (2o0tA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (2o0tA)R447 T0547 5 :GIDIWGNEN 2o0tA 3 :ELLHLAPNV T0547 17 :KNGKVC 2o0tA 12 :WPRNTT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLGK 2o0tA 74 :FLCSEVARWISEEGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2o0tA 89 :CLDVCTGGELAVALHASFPPERITLHGNNKSV T0547 140 :INIGF 2o0tA 121 :SELTA T0547 146 :AAEMGHNI 2o0tA 126 :AVKAGVGH T0547 155 :LTIEGLNELEAIIDIAKE 2o0tA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 2o0tA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2o0tA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGE T0547 264 :KNLKAINLGGGLAVEY 2o0tA 248 :AQIATVDLGGGLGISY T0547 282 :FKNEKSR 2o0tA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 2o0tA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 2o0tA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNALE 2o0tA 347 :LYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYVD 2o0tA 363 :APPVPARLVGKHCESGDIIVRD T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPAD 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVG T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWG 2o0tA 420 :AVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 24 number of extra gaps= 3 total=13686 Will force an alignment to be made, even if fragment is small Number of alignments=628 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (2o0tA)R447 T0547 15 :IIKNGKVC 2o0tA 10 :NVWPRNTT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYP 2o0tA 63 :SGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKS T0547 139 :LINIGF 2o0tA 120 :VSELTA T0547 146 :AAEMGHNI 2o0tA 126 :AVKAGVGH T0547 155 :LTIEGLNELEAIIDIAKE 2o0tA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 2o0tA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK 2o0tA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGP T0547 265 :NLKAINLGGGLAVEY 2o0tA 249 :QIATVDLGGGLGISY T0547 282 :FKNEKSR 2o0tA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 2o0tA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 2o0tA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNAL 2o0tA 347 :LYGAQYDVRLVSRV T0547 376 :EYLHDSIDHLESILTLFDLGYVD 2o0tA 362 :DAPPVPARLVGKHCESGDIIVRD T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 2o0tA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 23 number of extra gaps= 3 total=13709 Will force an alignment to be made, even if fragment is small Number of alignments=629 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (2o0tA)R447 T0547 3 :DYGIDIWGNENF 2o0tA 6 :HLAPNVWPRNTT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLGK 2o0tA 74 :FLCSEVARWISEEGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2o0tA 89 :CLDVCTGGELAVALHASFPPERITLHGNNKSV T0547 140 :INIGF 2o0tA 121 :SELTA T0547 146 :AAEMGHNI 2o0tA 126 :AVKAGVGH T0547 155 :LTIEGLNELEAIIDIAKE 2o0tA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 2o0tA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2o0tA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGE T0547 262 :GA 2o0tA 243 :GP T0547 265 :NLKAINLGGGLAVEY 2o0tA 249 :QIATVDLGGGLGISY T0547 282 :FKNEKSR 2o0tA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 2o0tA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 2o0tA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNALE 2o0tA 347 :LYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYVD 2o0tA 363 :APPVPARLVGKHCESGDIIVRD T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 2o0tA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 24 number of extra gaps= 3 total=13733 Will force an alignment to be made, even if fragment is small Number of alignments=630 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (2o0tA)R447 T0547 3 :DYGIDIWGN 2o0tA 6 :HLAPNVWPR T0547 20 :KVC 2o0tA 15 :NTT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYP 2o0tA 63 :SGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSV T0547 140 :INIGF 2o0tA 121 :SELTA T0547 146 :AAEMGHNI 2o0tA 126 :AVKAGVGH T0547 155 :LTIEGLNELEAIIDIAKE 2o0tA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLE 2o0tA 191 :AAMAAVRRVFATDHLR T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK 2o0tA 207 :LVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGP T0547 265 :NLKAINLGGGLAVEY 2o0tA 249 :QIATVDLGGGLGISY T0547 282 :FKNEKSR 2o0tA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 2o0tA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 2o0tA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPS 2o0tA 347 :LYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRD T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPAD 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVG T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWG 2o0tA 420 :AVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 24 number of extra gaps= 3 total=13757 Will force an alignment to be made, even if fragment is small Number of alignments=631 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (2o0tA)R447 T0547 3 :DYGIDIWGNEN 2o0tA 6 :HLAPNVWPRNT T0547 22 :C 2o0tA 17 :T T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYP 2o0tA 63 :SGANVHYA T0547 88 :NQYPGFVKNLVKLGK 2o0tA 74 :FLCSEVARWISEEGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2o0tA 89 :CLDVCTGGELAVALHASFPPERITLHGNNKSV T0547 140 :INIGF 2o0tA 121 :SELTA T0547 146 :AAEMGHNI 2o0tA 126 :AVKAGVGH T0547 155 :LTIEGLNELEAIIDIAKE 2o0tA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLE 2o0tA 191 :AAMAAVRRVFATDHLR T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2o0tA 207 :LVGLHSHIGSQIFDVDGFELAAHRVIGLLRDV T0547 259 :RKMGAK 2o0tA 240 :GEFGPE T0547 265 :NLKAINLGGGLAVEY 2o0tA 249 :QIATVDLGGGLGISY T0547 282 :FKNEKSR 2o0tA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 2o0tA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 2o0tA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNALE 2o0tA 347 :LYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYVD 2o0tA 363 :APPVPARLVGKHCESGDIIVRD T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 2o0tA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 25 number of extra gaps= 3 total=13782 Will force an alignment to be made, even if fragment is small Number of alignments=632 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 T0547 19 :GKVC 2o0tA 14 :RNTT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSV T0547 140 :INIGF 2o0tA 121 :SELTA T0547 146 :AAEMGHNI 2o0tA 126 :AVKAGVGH T0547 155 :LTIEGLNELEAIIDIAKE 2o0tA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 2o0tA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 2o0tA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGGLAVEY 2o0tA 247 :TAQIATVDLGGGLGISY T0547 282 :FKNEKSR 2o0tA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 2o0tA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 2o0tA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPS 2o0tA 347 :LYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2o0tA 388 :PDDIRPGDLVAVAATGAYCYSLSSRYNMVG T0547 429 :L 2o0tA 419 :P T0547 536 :AIISINEKGYEVEG 2o0tA 420 :AVVAVHAGNARLVL T0547 582 :KLVNDKQKK 2o0tA 434 :RRETVDDLL Number of specific fragments extracted= 24 number of extra gaps= 3 total=13806 Will force an alignment to be made, even if fragment is small Number of alignments=633 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)L456 because last residue in template chain is (2o0tA)R447 T0547 3 :DYGIDIWGNE 2o0tA 6 :HLAPNVWPRN T0547 21 :VC 2o0tA 16 :TT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLGK 2o0tA 74 :FLCSEVARWISEEGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2o0tA 89 :CLDVCTGGELAVALHASFPPERITLHGNNKSV T0547 140 :INIGF 2o0tA 121 :SELTA T0547 146 :AAEMGHNI 2o0tA 126 :AVKAGVGH T0547 155 :LTIEGLNELEAIIDIAKE 2o0tA 134 :IVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLH 2o0tA 160 :VRLTVG T0547 188 :SAGVGIWAKSGGINSKFGLTST 2o0tA 167 :EAHTHEFISTAHEDQKFGLSVA T0547 210 :ELIEAVNLLKENKLL 2o0tA 191 :AAMAAVRRVFATDHL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2o0tA 206 :RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGE T0547 264 :KNLKAINLGGGLAVEY 2o0tA 248 :AQIATVDLGGGLGISY T0547 282 :FKNEKSR 2o0tA 264 :LPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDV T0547 343 :EYAENKLI 2o0tA 327 :TAHRRYVS T0547 353 :KQNPKLIDE 2o0tA 337 :GGMSDNIRT T0547 362 :LYDLYKSIKPSNALE 2o0tA 347 :LYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYVD 2o0tA 363 :APPVPARLVGKHCESGDIIVRD T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 2o0tA 417 :GRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 24 number of extra gaps= 3 total=13830 Will force an alignment to be made, even if fragment is small Number of alignments=634 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 1 :MMDYGIDIWGNENF 2o0tA 4 :LLHLAPNVWPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKE 2o0tA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2o0tA 38 :YGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYP 2o0tA 63 :SGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 2o0tA 118 :KSVSELTAAV T0547 148 :EMGHNIT 2o0tA 128 :KAGVGHI T0547 156 :TIEGLNELEAIIDIAKE 2o0tA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGIWAKSGG 2o0tA 160 :VRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTS 2o0tA 179 :EDQKFGLSV T0547 209 :TELIEAVNLLKENKLLEQFT 2o0tA 190 :GAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2o0tA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 2o0tA 241 :EFGPE T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2o0tA 249 :QIATVDLGGGLGISYLPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 2o0tA 329 :HRR T0547 348 :KLI 2o0tA 332 :YVS T0547 353 :K 2o0tA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2o0tA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 2o0tA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHA T0547 439 :RYLVNFSLFQSMPDFWGLEQ 2o0tA 427 :GNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 26 number of extra gaps= 3 total=13856 Will force an alignment to be made, even if fragment is small Number of alignments=635 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 1 :MMDYGID 2o0tA 2 :NELLHLA T0547 8 :IWGNENF 2o0tA 11 :VWPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKE 2o0tA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2o0tA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 2o0tA 62 :G T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLGK 2o0tA 74 :FLCSEVARWISEEGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2o0tA 89 :CLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 2o0tA 118 :KSVSELTAAV T0547 148 :EMGHNIT 2o0tA 128 :KAGVGHI T0547 156 :TIEGLNELEAIIDIAKE 2o0tA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGIWAKSGG 2o0tA 160 :VRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTST 2o0tA 179 :EDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLEQFT 2o0tA 191 :AAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2o0tA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 2o0tA 241 :EFGPE T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2o0tA 249 :QIATVDLGGGLGISYLPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 2o0tA 329 :HRR T0547 348 :KLI 2o0tA 332 :YVS T0547 353 :K 2o0tA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2o0tA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 2o0tA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2o0tA 425 :HAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 28 number of extra gaps= 3 total=13884 Will force an alignment to be made, even if fragment is small Number of alignments=636 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 1 :MMDYGID 2o0tA 2 :NELLHLA T0547 8 :IWGNENF 2o0tA 11 :VWPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKE 2o0tA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2o0tA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 2o0tA 62 :G T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 2o0tA 118 :KSVSELTAAV T0547 148 :EMGHNIT 2o0tA 128 :KAGVGHI T0547 156 :TIEGLNELEAIIDIAKE 2o0tA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGIWAKSGG 2o0tA 160 :VRLTVGVEAHTHEFISTA T0547 200 :INSKFGL 2o0tA 179 :EDQKFGL T0547 207 :TSTELIEAVNLLKENKLLEQFT 2o0tA 188 :ASGAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2o0tA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 2o0tA 241 :EFGPE T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2o0tA 249 :QIATVDLGGGLGISYLPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 2o0tA 329 :HRR T0547 348 :KLI 2o0tA 332 :YVS T0547 353 :K 2o0tA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2o0tA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGY 2o0tA 366 :VPARLVGKHCESGDIIVRDT T0547 398 :DLQ 2o0tA 386 :WVP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2o0tA 425 :HAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 28 number of extra gaps= 3 total=13912 Will force an alignment to be made, even if fragment is small Number of alignments=637 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 1 :MMDYGID 2o0tA 2 :NELLHLA T0547 9 :WGNENF 2o0tA 12 :WPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKE 2o0tA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2o0tA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 2o0tA 62 :G T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLGK 2o0tA 74 :FLCSEVARWISEEGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2o0tA 89 :CLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 2o0tA 118 :KSVSELTAAV T0547 148 :EMGHNIT 2o0tA 128 :KAGVGHI T0547 156 :TIEGLNELEAIIDIAKE 2o0tA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGIWAKSGG 2o0tA 160 :VRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTST 2o0tA 179 :EDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLEQFT 2o0tA 191 :AAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2o0tA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 2o0tA 241 :EFGPE T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2o0tA 249 :QIATVDLGGGLGISYLPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 2o0tA 329 :HRR T0547 348 :KLI 2o0tA 332 :YVS T0547 353 :K 2o0tA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2o0tA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 2o0tA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2o0tA 425 :HAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 28 number of extra gaps= 3 total=13940 Will force an alignment to be made, even if fragment is small Number of alignments=638 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 1 :MMDYGID 2o0tA 2 :NELLHLA T0547 8 :IWGNENF 2o0tA 11 :VWPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKE 2o0tA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2o0tA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 2o0tA 62 :G T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 2o0tA 118 :KSVSELTAAV T0547 148 :EMGHNIT 2o0tA 128 :KAGVGHI T0547 156 :TIEGLNELEAIIDIAKE 2o0tA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGIWAKSGG 2o0tA 160 :VRLTVGVEAHTHEFISTA T0547 200 :INSKFGL 2o0tA 179 :EDQKFGL T0547 207 :TSTELIEAVNLLKENKLLEQFT 2o0tA 188 :ASGAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2o0tA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMG 2o0tA 241 :EFG T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2o0tA 247 :TAQIATVDLGGGLGISYLPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 2o0tA 329 :HRR T0547 348 :KLI 2o0tA 332 :YVS T0547 353 :K 2o0tA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2o0tA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGY 2o0tA 366 :VPARLVGKHCESGDIIVRDT T0547 398 :DLQ 2o0tA 386 :WVP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2o0tA 425 :HAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 28 number of extra gaps= 3 total=13968 Will force an alignment to be made, even if fragment is small Number of alignments=639 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 1 :MMDYGID 2o0tA 2 :NELLHLA T0547 8 :IWGNENF 2o0tA 11 :VWPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKE 2o0tA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2o0tA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 2o0tA 62 :G T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLGK 2o0tA 74 :FLCSEVARWISEEGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2o0tA 89 :CLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 2o0tA 118 :KSVSELTAAV T0547 148 :EMGHNIT 2o0tA 128 :KAGVGHI T0547 156 :TIEGLNELEAIIDIAKE 2o0tA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGIWAKSGG 2o0tA 160 :VRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTS 2o0tA 179 :EDQKFGLSV T0547 209 :TELIEAVNLLKENKLLEQFT 2o0tA 190 :GAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2o0tA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMG 2o0tA 241 :EFG T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2o0tA 247 :TAQIATVDLGGGLGISYLPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 2o0tA 329 :HRR T0547 348 :KLI 2o0tA 332 :YVS T0547 353 :K 2o0tA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2o0tA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 2o0tA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2o0tA 425 :HAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 28 number of extra gaps= 3 total=13996 Will force an alignment to be made, even if fragment is small Number of alignments=640 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 6 :IDIWGNENF 2o0tA 9 :PNVWPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKE 2o0tA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2o0tA 38 :YGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYP 2o0tA 63 :SGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 2o0tA 118 :KSVSELTAAV T0547 148 :EMGHNIT 2o0tA 128 :KAGVGHI T0547 156 :TIEGLNELEAIIDIAKE 2o0tA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGIWAKSGG 2o0tA 160 :VRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTS 2o0tA 179 :EDQKFGLSV T0547 209 :TELIEAVNLLKENKLLEQFT 2o0tA 190 :GAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2o0tA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 2o0tA 241 :EFGPE T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2o0tA 249 :QIATVDLGGGLGISYLPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 2o0tA 329 :HRR T0547 348 :KLI 2o0tA 332 :YVS T0547 353 :K 2o0tA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2o0tA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 2o0tA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHA T0547 439 :RYLVNFSLFQSMPDFWGLEQ 2o0tA 427 :GNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 26 number of extra gaps= 3 total=14022 Will force an alignment to be made, even if fragment is small Number of alignments=641 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 9 :WGNENF 2o0tA 12 :WPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKE 2o0tA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2o0tA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 2o0tA 62 :G T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLGK 2o0tA 74 :FLCSEVARWISEEGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2o0tA 89 :CLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 2o0tA 118 :KSVSELTAAV T0547 148 :EMGHNIT 2o0tA 128 :KAGVGHI T0547 156 :TIEGLNELEAIIDIAKE 2o0tA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGIWAKSGG 2o0tA 160 :VRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTST 2o0tA 179 :EDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLEQFT 2o0tA 191 :AAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2o0tA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 2o0tA 241 :EFGPE T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2o0tA 249 :QIATVDLGGGLGISYLPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 2o0tA 329 :HRR T0547 348 :KLI 2o0tA 332 :YVS T0547 353 :K 2o0tA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2o0tA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 2o0tA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2o0tA 425 :HAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 27 number of extra gaps= 3 total=14049 Will force an alignment to be made, even if fragment is small Number of alignments=642 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 9 :WGNENF 2o0tA 12 :WPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKE 2o0tA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2o0tA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 2o0tA 62 :G T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 2o0tA 118 :KSVSELTAAV T0547 148 :EMGHNIT 2o0tA 128 :KAGVGHI T0547 156 :TIEGLNELEAIIDIAKE 2o0tA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGIWAKSGG 2o0tA 160 :VRLTVGVEAHTHEFISTA T0547 200 :INSKFGL 2o0tA 179 :EDQKFGL T0547 207 :TSTELIEAVNLLKENKLLEQFT 2o0tA 188 :ASGAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2o0tA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 2o0tA 241 :EFGPE T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2o0tA 249 :QIATVDLGGGLGISYLPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 2o0tA 329 :HRR T0547 348 :KLI 2o0tA 332 :YVS T0547 353 :K 2o0tA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2o0tA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGY 2o0tA 366 :VPARLVGKHCESGDIIVRDT T0547 398 :DLQ 2o0tA 386 :WVP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2o0tA 425 :HAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 27 number of extra gaps= 3 total=14076 Will force an alignment to be made, even if fragment is small Number of alignments=643 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 9 :WGNENF 2o0tA 12 :WPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKE 2o0tA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2o0tA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 2o0tA 62 :G T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLGK 2o0tA 74 :FLCSEVARWISEEGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2o0tA 89 :CLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 2o0tA 118 :KSVSELTAAV T0547 148 :EMGHNIT 2o0tA 128 :KAGVGHI T0547 156 :TIEGLNELEAIIDIAKE 2o0tA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGIWAKSGG 2o0tA 160 :VRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTST 2o0tA 179 :EDQKFGLSVA T0547 210 :ELIEAVNLLKENKLLEQFT 2o0tA 191 :AAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2o0tA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMGAK 2o0tA 241 :EFGPE T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2o0tA 249 :QIATVDLGGGLGISYLPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 2o0tA 329 :HRR T0547 348 :KLI 2o0tA 332 :YVS T0547 353 :K 2o0tA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2o0tA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 2o0tA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2o0tA 425 :HAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 27 number of extra gaps= 3 total=14103 Will force an alignment to be made, even if fragment is small Number of alignments=644 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 8 :IWGNENF 2o0tA 11 :VWPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKE 2o0tA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2o0tA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 2o0tA 62 :G T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 2o0tA 118 :KSVSELTAAV T0547 148 :EMGHNIT 2o0tA 128 :KAGVGHI T0547 156 :TIEGLNELEAIIDIAKE 2o0tA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGIWAKSGG 2o0tA 160 :VRLTVGVEAHTHEFISTA T0547 200 :INSKFGL 2o0tA 179 :EDQKFGL T0547 207 :TSTELIEAVNLLKENKLLEQFT 2o0tA 188 :ASGAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2o0tA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMG 2o0tA 241 :EFG T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2o0tA 247 :TAQIATVDLGGGLGISYLPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 2o0tA 329 :HRR T0547 348 :KLI 2o0tA 332 :YVS T0547 353 :K 2o0tA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2o0tA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGY 2o0tA 366 :VPARLVGKHCESGDIIVRDT T0547 398 :DLQ 2o0tA 386 :WVP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2o0tA 425 :HAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 27 number of extra gaps= 3 total=14130 Will force an alignment to be made, even if fragment is small Number of alignments=645 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I15 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)I16 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 9 :WGNENF 2o0tA 12 :WPRNTT T0547 17 :KNGKVCI 2o0tA 20 :EVGVVCI T0547 27 :KKPAIIDIVKE 2o0tA 27 :AGIPLTQLAQE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2o0tA 38 :YGTPLFVIDEDDFRSRCRETAAAF T0547 77 :G 2o0tA 62 :G T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLGK 2o0tA 74 :FLCSEVARWISEEGL T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2o0tA 89 :CLDVCTGGELAVALHASFPPERITLHGN T0547 135 :KDRELINIGF 2o0tA 118 :KSVSELTAAV T0547 148 :EMGHNIT 2o0tA 128 :KAGVGHI T0547 156 :TIEGLNELEAIIDIAKE 2o0tA 135 :VVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGIWAKSGG 2o0tA 160 :VRLTVGVEAHTHEFISTA T0547 200 :INSKFGLTS 2o0tA 179 :EDQKFGLSV T0547 209 :TELIEAVNLLKENKLLEQFT 2o0tA 190 :GAAMAAVRRVFATDHLRLVG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 2o0tA 210 :LHSHIGSQIFDVDGFELAAHRVIGLLRDVV T0547 260 :KMG 2o0tA 241 :EFG T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2o0tA 247 :TAQIATVDLGGGLGISYLPSDDPP T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 2o0tA 271 :PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD T0547 344 :YAE 2o0tA 329 :HRR T0547 348 :KLI 2o0tA 332 :YVS T0547 353 :K 2o0tA 337 :G T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2o0tA 339 :MSDNIRTALYGAQYDVRLVSRVS T0547 377 :YLHDSIDHLESILTLFDLGYV 2o0tA 366 :VPARLVGKHCESGDIIVRDTW T0547 399 :LQ 2o0tA 387 :VP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2o0tA 390 :DIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2o0tA 425 :HAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 27 number of extra gaps= 3 total=14157 Will force an alignment to be made, even if fragment is small Number of alignments=646 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)D7 because first residue in template chain is (2o0tA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 8 :IWGNENFIIKNGKVC 2o0tA 3 :ELLHLAPNVWPRNTT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFGS T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVG T0547 154 :TLTIEGLNELEAIIDIAKE 2o0tA 133 :HIVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGI 2o0tA 160 :VRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 2o0tA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 2o0tA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKN 2o0tA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPE T0547 266 :LKAINLGGGLAVEYSQFKNEKSR 2o0tA 250 :IATVDLGGGLGISYLPSDDPPPI T0547 293 :REYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2o0tA 273 :AELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 2o0tA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 2o0tA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2o0tA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 3 total=14174 Will force an alignment to be made, even if fragment is small Number of alignments=647 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2o0tA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 3 :DYGIDIWGN 2o0tA 3 :ELLHLAPNV T0547 20 :KVC 2o0tA 15 :NTT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVG T0547 154 :TLTIEGLNELEAIIDIAKE 2o0tA 133 :HIVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGI 2o0tA 160 :VRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2o0tA 173 :FISTAHEDQKFGLSVASGAAMAAVRRVFA T0547 223 :LLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 2o0tA 203 :DHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2o0tA 247 :TAQIATVDLGGGLGISYLPSDDPPPI T0547 293 :REYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2o0tA 273 :AELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 2o0tA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 2o0tA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2o0tA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 3 total=14191 Will force an alignment to be made, even if fragment is small Number of alignments=648 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)E12 because first residue in template chain is (2o0tA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 13 :NFIIKNGKVC 2o0tA 3 :ELLHLAPNVW T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFGS T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVG T0547 154 :TLTIEGLNELEAIIDIAKE 2o0tA 133 :HIVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGI 2o0tA 160 :VRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 2o0tA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 2o0tA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 2o0tA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 2o0tA 247 :TAQIATVDLGGGLGISYLPSDDPPP T0547 292 :LREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2o0tA 272 :IAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 2o0tA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 2o0tA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2o0tA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 3 total=14208 Will force an alignment to be made, even if fragment is small Number of alignments=649 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)E12 because first residue in template chain is (2o0tA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 13 :NFIIKNGK 2o0tA 3 :ELLHLAPN T0547 21 :VC 2o0tA 16 :TT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYP 2o0tA 63 :SGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVG T0547 154 :TLTIEGLNELEAIIDIAKE 2o0tA 133 :HIVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGI 2o0tA 160 :VRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKL 2o0tA 173 :FISTAHEDQKFGLSVASGAAMAAVRRVFAT T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 2o0tA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2o0tA 247 :TAQIATVDLGGGLGISYLPSDDPPPI T0547 293 :REYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2o0tA 273 :AELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 2o0tA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 2o0tA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2o0tA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 3 total=14225 Will force an alignment to be made, even if fragment is small Number of alignments=650 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)Y4 because first residue in template chain is (2o0tA)N2 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)P472 because last residue in template chain is (2o0tA)R447 T0547 5 :GIDIWGNEN 2o0tA 3 :ELLHLAPNV T0547 21 :VCI 2o0tA 15 :NTT T0547 26 :EKK 2o0tA 20 :EVG T0547 29 :PAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2o0tA 24 :VCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVG T0547 154 :TLTIEGLNELEAIIDIAKE 2o0tA 133 :HIVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGI 2o0tA 160 :VRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 2o0tA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 2o0tA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 2o0tA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 2o0tA 247 :TAQIATVDLGGGLGISYLPSDDPPP T0547 292 :LREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2o0tA 272 :IAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 2o0tA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 2o0tA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 2o0tA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLE T0547 471 :E 2o0tA 446 :V Number of specific fragments extracted= 20 number of extra gaps= 3 total=14245 Will force an alignment to be made, even if fragment is small Number of alignments=651 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2o0tA)N2 Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 3 :DYGIDIWGNEN 2o0tA 3 :ELLHLAPNVWP T0547 19 :GKVC 2o0tA 14 :RNTT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVG T0547 154 :TLTIEGLNELEAIIDIAKE 2o0tA 133 :HIVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGI 2o0tA 160 :VRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKL 2o0tA 173 :FISTAHEDQKFGLSVASGAAMAAVRRVFAT T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2o0tA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDV T0547 259 :RKMGAKNLKAINLGGGLAVEYSQFKNEKSR 2o0tA 243 :GPEKTAQIATVDLGGGLGISYLPSDDPPPI T0547 293 :REYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2o0tA 273 :AELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 2o0tA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 2o0tA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2o0tA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 3 total=14262 Will force an alignment to be made, even if fragment is small Number of alignments=652 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 T0547 16 :IKNGKVC 2o0tA 11 :VWPRNTT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFGS T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVG T0547 154 :TLTIEGLNELEAIIDIAKE 2o0tA 133 :HIVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGI 2o0tA 160 :VRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 2o0tA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 2o0tA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKN 2o0tA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPE T0547 266 :LKAINLGGGLAVEYSQFKNEKSR 2o0tA 250 :IATVDLGGGLGISYLPSDDPPPI T0547 293 :REYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2o0tA 273 :AELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 2o0tA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 2o0tA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2o0tA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 17 number of extra gaps= 3 total=14279 Will force an alignment to be made, even if fragment is small Number of alignments=653 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVG T0547 154 :TLTIEGLNELEAIIDIAKE 2o0tA 133 :HIVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGI 2o0tA 160 :VRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2o0tA 173 :FISTAHEDQKFGLSVASGAAMAAVRRVFA T0547 223 :LLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 2o0tA 203 :DHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2o0tA 247 :TAQIATVDLGGGLGISYLPSDDPPPI T0547 293 :REYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2o0tA 273 :AELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 2o0tA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 2o0tA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2o0tA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 15 number of extra gaps= 3 total=14294 Will force an alignment to be made, even if fragment is small Number of alignments=654 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFGS T0547 78 :GFNAVYP 2o0tA 64 :GANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVG T0547 154 :TLTIEGLNELEAIIDIAKE 2o0tA 133 :HIVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGI 2o0tA 160 :VRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 2o0tA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 2o0tA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 2o0tA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 2o0tA 247 :TAQIATVDLGGGLGISYLPSDDPPP T0547 292 :LREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2o0tA 272 :IAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 2o0tA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 2o0tA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2o0tA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 16 number of extra gaps= 3 total=14310 Will force an alignment to be made, even if fragment is small Number of alignments=655 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 21 :VC 2o0tA 16 :TT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFG T0547 77 :GGFNAVYP 2o0tA 63 :SGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVG T0547 154 :TLTIEGLNELEAIIDIAKE 2o0tA 133 :HIVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGI 2o0tA 160 :VRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKL 2o0tA 173 :FISTAHEDQKFGLSVASGAAMAAVRRVFAT T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 2o0tA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2o0tA 247 :TAQIATVDLGGGLGISYLPSDDPPPI T0547 293 :REYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2o0tA 273 :AELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 2o0tA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 2o0tA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2o0tA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 16 number of extra gaps= 3 total=14326 Will force an alignment to be made, even if fragment is small Number of alignments=656 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 T0547 22 :CI 2o0tA 16 :TT T0547 26 :EKK 2o0tA 20 :EVG T0547 29 :PAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2o0tA 24 :VCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVG T0547 154 :TLTIEGLNELEAIIDIAKE 2o0tA 133 :HIVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGI 2o0tA 160 :VRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTS 2o0tA 173 :FISTAHEDQKFGLSV T0547 209 :TELIEAVNLLKENK 2o0tA 190 :GAAMAAVRRVFATD T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 2o0tA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEF T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 2o0tA 247 :TAQIATVDLGGGLGISYLPSDDPPP T0547 292 :LREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2o0tA 272 :IAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 2o0tA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 2o0tA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGL 2o0tA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSL Number of specific fragments extracted= 18 number of extra gaps= 3 total=14344 Will force an alignment to be made, even if fragment is small Number of alignments=657 # 2o0tA read from all-align.a2m # found chain 2o0tA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D19 Warning: unaligning (T0547)N24 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D19 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2o0tA)A73 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2o0tA)A73 Warning: unaligning (T0547)I180 because of BadResidue code BAD_PEPTIDE in next template residue (2o0tA)L159 Warning: unaligning (T0547)G181 because of BadResidue code BAD_PEPTIDE at template residue (2o0tA)L159 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2o0tA)D336 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2o0tA)D336 Warning: unaligning (T0547)N459 because last residue in template chain is (2o0tA)R447 T0547 21 :VC 2o0tA 16 :TT T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2o0tA 20 :EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAF T0547 76 :KGGFNAVYP 2o0tA 62 :GSGANVHYA T0547 88 :NQYPGFVKNLVKLG 2o0tA 74 :FLCSEVARWISEEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2o0tA 88 :LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVG T0547 154 :TLTIEGLNELEAIIDIAKE 2o0tA 133 :HIVVDSMTEIERLDAIAGE T0547 174 :FKPKPN 2o0tA 152 :AGIVQD T0547 182 :LRVRLHSAGVGI 2o0tA 160 :VRLTVGVEAHTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENKL 2o0tA 173 :FISTAHEDQKFGLSVASGAAMAAVRRVFAT T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2o0tA 204 :HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDV T0547 259 :RKMGAKNLKAINLGGGLAVEYSQFKNEKSR 2o0tA 243 :GPEKTAQIATVDLGGGLGISYLPSDDPPPI T0547 293 :REYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2o0tA 273 :AELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV T0547 345 :AENKL 2o0tA 330 :RRYVS T0547 352 :KKQNPKLIDELYDLYKSIKPS 2o0tA 337 :GGMSDNIRTALYGAQYDVRLV T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2o0tA 359 :RVSDAPPVPARLVGKHCESGDIIVRDTWVP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2o0tA 391 :IRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLRRETVDDLLSLEV Number of specific fragments extracted= 16 number of extra gaps= 3 total=14360 Will force an alignment to be made, even if fragment is small Number of alignments=658 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)G5 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)P315 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)D469 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)R474 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 6 :IDIWGNENFIIKNGKVCIN 2p3eA 3 :LLKEYNPYLEYRDGELFIE T0547 28 :KPAIIDIVKEL 2p3eA 22 :GVSLKELAQTF T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 2p3eA 33 :GTPLYVYSSNFIKERFEAYRKAFP T0547 69 :A 2p3eA 58 :A T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 2p3eA 59 :LICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVY T0547 132 :NGFKDRELINIGF 2p3eA 108 :GVGKTEKELTDAV T0547 148 :EMGHNI 2p3eA 121 :DSEILM T0547 155 :LTIEGLNELEAIIDIAKER 2p3eA 127 :FNVESRQELDVLNEIAGKL T0547 175 :KPKPNIGLRVR 2p3eA 146 :GKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLE 2p3eA 175 :KFGVDIREAQKEYEYASKLENLE T0547 227 :FTMI 2p3eA 198 :IVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFK 2p3eA 235 :DIKYLDIGGGLGIKYKPED T0547 288 :RNYTLREYANDVVFI 2p3eA 254 :KEPAPQDLADLLKDL T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 275 :KIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 439 :RYLVNFSLFQSMPDFW 2p3eA 306 :FIIVDAGMNDLIRPSI T0547 456 :LEQNFPIMPLDRL 2p3eA 322 :YNAYHHIIPVETK T0547 475 :SASIWDITCDSDGEISYS 2p3eA 340 :VADIVGPICETGDFLALD T0547 497 :LFLHDVDVEK 2p3eA 358 :REIEEVQRGE T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2p3eA 368 :YLAVLSAGAYGFAMSSHYNMRPRAAEVLVE T0547 541 :NEKGYEVEGIIEAQ 2p3eA 398 :NGSVKLIRKRENYD Number of specific fragments extracted= 22 number of extra gaps= 1 total=14382 Will force an alignment to be made, even if fragment is small Number of alignments=659 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)P315 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)D469 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)R474 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 10 :GNENFIIKNGKVCIN 2p3eA 7 :YNPYLEYRDGELFIE T0547 28 :KPAIIDIVKEL 2p3eA 22 :GVSLKELAQTF T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 2p3eA 33 :GTPLYVYSSNFIKERFEAYRKAFP T0547 69 :A 2p3eA 58 :A T0547 80 :NAVYPLKVNQYPGFVKNLVKLG 2p3eA 59 :LICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVY T0547 132 :NGFKDRELINIGF 2p3eA 108 :GVGKTEKELTDAV T0547 148 :EMGHNI 2p3eA 121 :DSEILM T0547 155 :LTIEGLNELEAIIDIAKER 2p3eA 127 :FNVESRQELDVLNEIAGKL T0547 175 :KPKPNIGLRVR 2p3eA 146 :GKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLE 2p3eA 175 :KFGVDIREAQKEYEYASKLENLE T0547 227 :FTMI 2p3eA 198 :IVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFK 2p3eA 235 :DIKYLDIGGGLGIKYKPED T0547 288 :RNYTLREYANDVVFI 2p3eA 254 :KEPAPQDLADLLKDL T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 275 :KIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 439 :RYLVNFSLFQSMPDFW 2p3eA 306 :FIIVDAGMNDLIRPSI T0547 456 :LEQNFPIMPLDRL 2p3eA 322 :YNAYHHIIPVETK T0547 475 :SASIWDITCDSDGEISYS 2p3eA 340 :VADIVGPICETGDFLALD T0547 497 :LFLHDVDVEK 2p3eA 358 :REIEEVQRGE T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2p3eA 368 :YLAVLSAGAYGFAMSSHYNMRPRAAEVLVE T0547 541 :NEKGYEVEGIIEAQ 2p3eA 398 :NGSVKLIRKRENYD T0547 556 :IL 2p3eA 413 :IV Number of specific fragments extracted= 23 number of extra gaps= 1 total=14405 Will force an alignment to be made, even if fragment is small Number of alignments=660 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)Y4 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)P315 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)D469 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)R474 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 5 :GIDIWG 2p3eA 3 :LLKEYN T0547 12 :ENFIIKNGKVCINYEK 2p3eA 9 :PYLEYRDGELFIEGVS T0547 31 :IIDIVKEL 2p3eA 25 :LKELAQTF T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 2p3eA 33 :GTPLYVYSSNFIKERFEAYRKAFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 57 :DALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGA 2p3eA 81 :AGADIVSGGELYLAKKAGIPPE T0547 128 :PITVNGFKDRELINIGF 2p3eA 104 :IVYAGVGKTEKELTDAV T0547 148 :EMGHNI 2p3eA 121 :DSEILM T0547 155 :LTIEGLNELEAIIDIAKER 2p3eA 127 :FNVESRQELDVLNEIAGKL T0547 175 :KPKPNIGLRVR 2p3eA 146 :GKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLE 2p3eA 175 :KFGVDIREAQKEYEYASKLENLE T0547 227 :FTMI 2p3eA 198 :IVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYS 2p3eA 235 :DIKYLDIGGGLGIKYK T0547 285 :EKSRNYTLREYANDVVFI 2p3eA 251 :PEDKEPAPQDLADLLKDL T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQE 2p3eA 275 :KIILEPGRSIMGNAGILITQVQFLKDKG T0547 438 :ERYLVNFSLFQSMPDFW 2p3eA 305 :HFIIVDAGMNDLIRPSI T0547 456 :LEQNFPIMPLDRL 2p3eA 322 :YNAYHHIIPVETK T0547 475 :SASIWDITCDSDGEISYS 2p3eA 340 :VADIVGPICETGDFLALD T0547 497 :LFLHDVDVEK 2p3eA 358 :REIEEVQRGE T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2p3eA 368 :YLAVLSAGAYGFAMSSHYNMRPRAAEVLVE T0547 542 :EKGYEV 2p3eA 398 :NGSVKL T0547 550 :IIEAQSIL 2p3eA 404 :IRKRENYD T0547 605 :YLK 2p3eA 412 :YIV Number of specific fragments extracted= 24 number of extra gaps= 1 total=14429 Will force an alignment to be made, even if fragment is small Number of alignments=661 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)P315 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)D469 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)R474 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 11 :NENFIIKNGKVCINYEK 2p3eA 8 :NPYLEYRDGELFIEGVS T0547 31 :IIDIVKEL 2p3eA 25 :LKELAQTF T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 2p3eA 33 :GTPLYVYSSNFIKERFEAYRKAFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 57 :DALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGA 2p3eA 81 :AGADIVSGGELYLAKKAGIPPE T0547 128 :PITVNGFKDRELINIGF 2p3eA 104 :IVYAGVGKTEKELTDAV T0547 148 :EMGHNI 2p3eA 121 :DSEILM T0547 155 :LTIEGLNELEAIIDIAKER 2p3eA 127 :FNVESRQELDVLNEIAGKL T0547 175 :KPKPNIGLRVR 2p3eA 146 :GKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLE 2p3eA 175 :KFGVDIREAQKEYEYASKLENLE T0547 227 :FTMI 2p3eA 198 :IVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYS 2p3eA 235 :DIKYLDIGGGLGIKYK T0547 285 :EKSRNYTLREYANDVVFI 2p3eA 251 :PEDKEPAPQDLADLLKDL T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQE 2p3eA 275 :KIILEPGRSIMGNAGILITQVQFLKDKG T0547 438 :ERYLVNFSLFQSMPDFW 2p3eA 305 :HFIIVDAGMNDLIRPSI T0547 456 :LEQNFPIMPLDRL 2p3eA 322 :YNAYHHIIPVETK T0547 475 :SASIWDITCDSDGEISYS 2p3eA 340 :VADIVGPICETGDFLALD T0547 497 :LFLHDVDVEK 2p3eA 358 :REIEEVQRGE T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2p3eA 368 :YLAVLSAGAYGFAMSSHYNMRPRAAEVLVE T0547 542 :EKGYEV 2p3eA 398 :NGSVKL T0547 550 :IIEAQS 2p3eA 404 :IRKREN Number of specific fragments extracted= 22 number of extra gaps= 1 total=14451 Will force an alignment to be made, even if fragment is small Number of alignments=662 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)F14 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)R474 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 Warning: unaligning (T0547)D562 because last residue in template chain is (2p3eA)I420 T0547 15 :II 2p3eA 3 :LL T0547 17 :KNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2p3eA 6 :EYNPYLEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 57 :DALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAY 2p3eA 81 :AGADIVSGGELYLAKKA T0547 123 :NNEGAPITVNGFKDRELINIGFIA 2p3eA 99 :IPPERIVYAGVGKTEKELTDAVDS T0547 150 :GH 2p3eA 123 :EI T0547 153 :ITLTIEGLNELEAIIDIAKE 2p3eA 125 :LMFNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLE 2p3eA 175 :KFGVDIREAQKEYEYASKLENLE T0547 227 :FTMI 2p3eA 198 :IVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQ 2p3eA 235 :DIKYLDIGGGLGIKYKP T0547 295 :YANDVVFILKNIAEQ 2p3eA 254 :KEPAPQDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEY 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGS T0547 437 :QERYLVNFSLFQSMPDFWGLEQNFPIMPL 2p3eA 304 :KHFIIVDAGMNDLIRPSIYNAYHHIIPVE T0547 475 :SASIWDITCDSDGEI 2p3eA 340 :VADIVGPICETGDFL T0547 492 :SKDKP 2p3eA 357 :DREIE T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLE 2p3eA 362 :EVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDYIVEPSLD Number of specific fragments extracted= 18 number of extra gaps= 1 total=14469 Will force an alignment to be made, even if fragment is small Number of alignments=663 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)R474 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 21 :VCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2p3eA 10 :YLEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 57 :DALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAY 2p3eA 81 :AGADIVSGGELYLAKKA T0547 123 :NNEGAPITVNGFKDRELINIGFIA 2p3eA 99 :IPPERIVYAGVGKTEKELTDAVDS T0547 150 :GH 2p3eA 123 :EI T0547 153 :ITLTIEGLNELEAIIDIAKE 2p3eA 125 :LMFNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLE 2p3eA 175 :KFGVDIREAQKEYEYASKLENLE T0547 227 :FTMI 2p3eA 198 :IVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQ 2p3eA 235 :DIKYLDIGGGLGIKYKP T0547 295 :YANDVVFILKNIAEQ 2p3eA 254 :KEPAPQDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEY 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGS T0547 437 :QERYLVNFSLFQSMPDFWGLEQNFPIMPL 2p3eA 304 :KHFIIVDAGMNDLIRPSIYNAYHHIIPVE T0547 475 :SASIWDITCDSDGEI 2p3eA 340 :VADIVGPICETGDFL T0547 492 :SKDKP 2p3eA 357 :DREIE T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGII 2p3eA 362 :EVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKREN Number of specific fragments extracted= 17 number of extra gaps= 1 total=14486 Will force an alignment to be made, even if fragment is small Number of alignments=664 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 Warning: unaligning (T0547)E457 because last residue in template chain is (2p3eA)I420 T0547 3 :DYGI 2p3eA 3 :LLKE T0547 19 :GKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2p3eA 8 :NPYLEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVYAGVGKTE T0547 140 :INIGF 2p3eA 114 :KELTD T0547 146 :AAEMGHNI 2p3eA 119 :AVDSEILM T0547 155 :LTIEGLNELEAIIDIAKE 2p3eA 127 :FNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLE 2p3eA 175 :KFGVDIREAQKEYEYASKLENLE T0547 227 :FTMI 2p3eA 198 :IVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEY 2p3eA 235 :DIKYLDIGGGLGIKY T0547 282 :FKNEKSR 2p3eA 250 :KPEDKEP T0547 291 :TLREYANDVVFI 2p3eA 257 :APQDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEY 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGS T0547 346 :ENKLILKKQNPKLIDE 2p3eA 304 :KHFIIVDAGMNDLIRP T0547 362 :LYDLYKSIKPSNAL 2p3eA 321 :IYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVD 2p3eA 340 :VADIVGPICETGDFLALD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYNMRP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGL 2p3eA 392 :AEVLVENGSVKLIRKRENYDYIVEPSLD Number of specific fragments extracted= 20 number of extra gaps= 1 total=14506 Will force an alignment to be made, even if fragment is small Number of alignments=665 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)G5 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)A189 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 Warning: unaligning (T0547)E457 because last residue in template chain is (2p3eA)I420 T0547 6 :IDIWGNENFIIKN 2p3eA 3 :LLKEYNPYLEYRD T0547 27 :KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2p3eA 16 :GELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVYAGVGKTE T0547 140 :INIGF 2p3eA 114 :KELTD T0547 146 :AAEMGHNI 2p3eA 119 :AVDSEILM T0547 155 :LTIEGLNELEAIIDIAKE 2p3eA 127 :FNVESRQELDVLNEIAGK T0547 178 :PNIGLRVRLH 2p3eA 145 :LGKKARIAIR T0547 188 :S 2p3eA 156 :N T0547 203 :KFGLTSTELIEAVNLLKENKLL 2p3eA 175 :KFGVDIREAQKEYEYASKLENL T0547 226 :QFTMI 2p3eA 197 :EIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEY 2p3eA 235 :DIKYLDIGGGLGIKY T0547 282 :FKNEKSR 2p3eA 250 :KPEDKEP T0547 291 :TLREYANDVVFI 2p3eA 257 :APQDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEY 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGS T0547 346 :ENKLILKKQNPKLIDE 2p3eA 304 :KHFIIVDAGMNDLIRP T0547 362 :LYDLYKSIKPSNAL 2p3eA 321 :IYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVD 2p3eA 340 :VADIVGPICETGDFLALD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWGL 2p3eA 389 :PRAAEVLVENGSVKLIRKRENYDYIVEPSLD Number of specific fragments extracted= 21 number of extra gaps= 1 total=14527 Will force an alignment to be made, even if fragment is small Number of alignments=666 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)N13 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 Warning: unaligning (T0547)E457 because last residue in template chain is (2p3eA)I420 T0547 15 :IIKN 2p3eA 3 :LLKE T0547 19 :GKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2p3eA 8 :NPYLEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTE T0547 140 :INIGF 2p3eA 114 :KELTD T0547 146 :AAEMGHNI 2p3eA 119 :AVDSEILM T0547 155 :LTIEGLNELEAIIDIAKE 2p3eA 127 :FNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLE 2p3eA 175 :KFGVDIREAQKEYEYASKLENLE T0547 227 :FTMI 2p3eA 198 :IVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEY 2p3eA 235 :DIKYLDIGGGLGIKY T0547 282 :FKNEKSR 2p3eA 250 :KPEDKEP T0547 291 :TLREYANDVVFI 2p3eA 257 :APQDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEY 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGS T0547 346 :ENKLILKKQNPKLIDE 2p3eA 304 :KHFIIVDAGMNDLIRP T0547 362 :LYDLYKSIKPSNAL 2p3eA 321 :IYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVD 2p3eA 340 :VADIVGPICETGDFLALD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYNMRP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGL 2p3eA 392 :AEVLVENGSVKLIRKRENYDYIVEPSLD Number of specific fragments extracted= 20 number of extra gaps= 1 total=14547 Will force an alignment to be made, even if fragment is small Number of alignments=667 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)G5 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 6 :IDIWGNENFIIK 2p3eA 3 :LLKEYNPYLEYR T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2p3eA 15 :DGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVYAGVGKTE T0547 140 :INIGF 2p3eA 114 :KELTD T0547 146 :AAEMGHNI 2p3eA 119 :AVDSEILM T0547 155 :LTIEGLNELEAIIDIAKE 2p3eA 127 :FNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLE 2p3eA 175 :KFGVDIREAQKEYEYASKLENLE T0547 227 :FTMI 2p3eA 198 :IVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEY 2p3eA 235 :DIKYLDIGGGLGIKY T0547 282 :FKNEKSR 2p3eA 250 :KPEDKEP T0547 291 :TLREYANDVVFI 2p3eA 257 :APQDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEY 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGS T0547 346 :ENKLILKKQNPKLIDE 2p3eA 304 :KHFIIVDAGMNDLIRP T0547 362 :LYDLYKSIKPSNAL 2p3eA 321 :IYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVD 2p3eA 340 :VADIVGPICETGDFLALD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDFWG 2p3eA 389 :PRAAEVLVENGSVKLIRKRENYDYIVEPSL T0547 602 :D 2p3eA 419 :D Number of specific fragments extracted= 21 number of extra gaps= 1 total=14568 Will force an alignment to be made, even if fragment is small Number of alignments=668 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 3 :DY 2p3eA 3 :LL T0547 11 :NEN 2p3eA 8 :NPY T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2p3eA 11 :LEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTE T0547 140 :INIGF 2p3eA 114 :KELTD T0547 146 :AAEMGHNI 2p3eA 119 :AVDSEILM T0547 155 :LTIEGLNELEAIIDIAKE 2p3eA 127 :FNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLL 2p3eA 175 :KFGVDIREAQKEYEYASKLENL T0547 226 :QFTMI 2p3eA 197 :EIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEY 2p3eA 235 :DIKYLDIGGGLGIKY T0547 282 :FKNEKSR 2p3eA 250 :KPEDKEP T0547 291 :TLREYANDV 2p3eA 257 :APQDLADLL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEY 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGS T0547 346 :ENKLILKKQNPKLIDE 2p3eA 304 :KHFIIVDAGMNDLIRP T0547 362 :LYDLYKSIKPSNAL 2p3eA 321 :IYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVD 2p3eA 340 :VADIVGPICETGDFLALD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYNMRP T0547 429 :L 2p3eA 391 :A T0547 536 :AIISINEKGYEVEG 2p3eA 392 :AEVLVENGSVKLIR T0547 582 :KLVNDKQKKH 2p3eA 406 :KRENYDYIVE T0547 607 :KSIGV 2p3eA 416 :PSLDI Number of specific fragments extracted= 24 number of extra gaps= 1 total=14592 Will force an alignment to be made, even if fragment is small Number of alignments=669 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)D3 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 4 :YGIDI 2p3eA 3 :LLKEY T0547 11 :NENF 2p3eA 8 :NPYL T0547 23 :INYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2p3eA 12 :EYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVYAGVGKTE T0547 140 :INIGF 2p3eA 114 :KELTD T0547 146 :AAEMGHNI 2p3eA 119 :AVDSEILM T0547 155 :LTIEGLNELEAIIDIAKE 2p3eA 127 :FNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLL 2p3eA 175 :KFGVDIREAQKEYEYASKLENL T0547 226 :QFTMI 2p3eA 197 :EIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEY 2p3eA 235 :DIKYLDIGGGLGIKY T0547 282 :FKNEKSR 2p3eA 250 :KPEDKEP T0547 291 :TLR 2p3eA 257 :APQ T0547 301 :FILKNIAEQ 2p3eA 260 :DLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEY 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGS T0547 346 :ENKLILKKQNPKLIDE 2p3eA 304 :KHFIIVDAGMNDLIRP T0547 362 :LYDLYKSIKPSNAL 2p3eA 321 :IYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVD 2p3eA 340 :VADIVGPICETGDFLALD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYNMRP T0547 536 :AIISINEKGYEVEGI 2p3eA 392 :AEVLVENGSVKLIRK T0547 553 :AQSILDTLEDL 2p3eA 407 :RENYDYIVEPS T0547 609 :IGV 2p3eA 418 :LDI Number of specific fragments extracted= 24 number of extra gaps= 1 total=14616 Will force an alignment to be made, even if fragment is small Number of alignments=670 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 21 :VCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2p3eA 10 :YLEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVYAGVGKTE T0547 140 :INIGF 2p3eA 114 :KELTD T0547 146 :AAEMGHNI 2p3eA 119 :AVDSEILM T0547 155 :LTIEGLNELEAIIDIAKE 2p3eA 127 :FNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLE 2p3eA 175 :KFGVDIREAQKEYEYASKLENLE T0547 227 :FTMI 2p3eA 198 :IVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEY 2p3eA 235 :DIKYLDIGGGLGIKY T0547 282 :FKNEKSR 2p3eA 250 :KPEDKEP T0547 291 :TLREYANDVVFI 2p3eA 257 :APQDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEY 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGS T0547 346 :ENKLILKKQNPKLIDE 2p3eA 304 :KHFIIVDAGMNDLIRP T0547 362 :LYDLYKSIKPSNAL 2p3eA 321 :IYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVD 2p3eA 340 :VADIVGPICETGDFLALD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYNMRP T0547 429 :LLAIQDEVQERYLVNFSLFQSMP 2p3eA 392 :AEVLVENGSVKLIRKRENYDYIV Number of specific fragments extracted= 19 number of extra gaps= 1 total=14635 Will force an alignment to be made, even if fragment is small Number of alignments=671 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)A189 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 12 :ENFIIK 2p3eA 9 :PYLEYR T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2p3eA 15 :DGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVYAGVGKTE T0547 140 :INIGF 2p3eA 114 :KELTD T0547 146 :AAEMGHNI 2p3eA 119 :AVDSEILM T0547 155 :LTIEGLNELEAIIDIAKE 2p3eA 127 :FNVESRQELDVLNEIAGK T0547 178 :PNIGLRVRLH 2p3eA 145 :LGKKARIAIR T0547 188 :S 2p3eA 156 :N T0547 203 :KFGLTSTELIEAVNLLKENKLL 2p3eA 175 :KFGVDIREAQKEYEYASKLENL T0547 226 :QFTMI 2p3eA 197 :EIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEY 2p3eA 235 :DIKYLDIGGGLGIKY T0547 282 :FKNEKSR 2p3eA 250 :KPEDKEP T0547 291 :TLREYANDVVFI 2p3eA 257 :APQDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEY 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGS T0547 346 :ENKLILKKQNPKLIDE 2p3eA 304 :KHFIIVDAGMNDLIRP T0547 362 :LYDLYKSIKPSNAL 2p3eA 321 :IYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVD 2p3eA 340 :VADIVGPICETGDFLALD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDF 2p3eA 389 :PRAAEVLVENGSVKLIRKRENYDYIVEP Number of specific fragments extracted= 21 number of extra gaps= 1 total=14656 Will force an alignment to be made, even if fragment is small Number of alignments=672 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 19 :GKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2p3eA 8 :NPYLEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTE T0547 140 :INIGF 2p3eA 114 :KELTD T0547 146 :AAEMGHNI 2p3eA 119 :AVDSEILM T0547 155 :LTIEGLNELEAIIDIAKE 2p3eA 127 :FNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLE 2p3eA 175 :KFGVDIREAQKEYEYASKLENLE T0547 227 :FTMI 2p3eA 198 :IVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEY 2p3eA 235 :DIKYLDIGGGLGIKY T0547 282 :FKNEKSR 2p3eA 250 :KPEDKEP T0547 291 :TLREYANDVVFI 2p3eA 257 :APQDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEY 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGS T0547 346 :ENKLILKKQNPKLIDE 2p3eA 304 :KHFIIVDAGMNDLIRP T0547 362 :LYDLYKSIKPSNAL 2p3eA 321 :IYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVD 2p3eA 340 :VADIVGPICETGDFLALD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYNMRP T0547 429 :LLAIQDEVQERYLVNFSLFQSMPD 2p3eA 392 :AEVLVENGSVKLIRKRENYDYIVE Number of specific fragments extracted= 19 number of extra gaps= 1 total=14675 Will force an alignment to be made, even if fragment is small Number of alignments=673 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 14 :FI 2p3eA 11 :LE T0547 24 :NYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2p3eA 13 :YRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVYAGVGKTE T0547 140 :INIGF 2p3eA 114 :KELTD T0547 146 :AAEMGHNI 2p3eA 119 :AVDSEILM T0547 155 :LTIEGLNELEAIIDIAKE 2p3eA 127 :FNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLE 2p3eA 175 :KFGVDIREAQKEYEYASKLENLE T0547 227 :FTMI 2p3eA 198 :IVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEY 2p3eA 235 :DIKYLDIGGGLGIKY T0547 282 :FKNEKSR 2p3eA 250 :KPEDKEP T0547 291 :TLREYANDVVFI 2p3eA 257 :APQDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEY 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGS T0547 346 :ENKLILKKQNPKLIDE 2p3eA 304 :KHFIIVDAGMNDLIRP T0547 362 :LYDLYKSIKPSNAL 2p3eA 321 :IYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVD 2p3eA 340 :VADIVGPICETGDFLALD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYN T0547 426 :PADLLAIQDEVQERYLVNFSLFQSMPDF 2p3eA 389 :PRAAEVLVENGSVKLIRKRENYDYIVEP Number of specific fragments extracted= 20 number of extra gaps= 1 total=14695 Will force an alignment to be made, even if fragment is small Number of alignments=674 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 23 :INYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2p3eA 12 :EYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTE T0547 140 :INIGF 2p3eA 114 :KELTD T0547 146 :AAEMGHNI 2p3eA 119 :AVDSEILM T0547 155 :LTIEGLNELEAIIDIAKE 2p3eA 127 :FNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLL 2p3eA 175 :KFGVDIREAQKEYEYASKLENL T0547 226 :QFTMI 2p3eA 197 :EIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEY 2p3eA 235 :DIKYLDIGGGLGIKY T0547 282 :FKNEKSR 2p3eA 250 :KPEDKEP T0547 291 :TLREYANDV 2p3eA 257 :APQDLADLL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEY 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGS T0547 346 :ENKLILKKQNPKLIDE 2p3eA 304 :KHFIIVDAGMNDLIRP T0547 362 :LYDLYKSIKPSNAL 2p3eA 321 :IYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVD 2p3eA 340 :VADIVGPICETGDFLALD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYNMRP T0547 429 :L 2p3eA 391 :A T0547 536 :AIISINEKGYEVEG 2p3eA 392 :AEVLVENGSVKLIR T0547 582 :KLVNDKQK 2p3eA 406 :KRENYDYI Number of specific fragments extracted= 21 number of extra gaps= 1 total=14716 Will force an alignment to be made, even if fragment is small Number of alignments=675 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2p3eA 11 :LEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVYAGVGKTE T0547 140 :INIGF 2p3eA 114 :KELTD T0547 146 :AAEMGHNI 2p3eA 119 :AVDSEILM T0547 155 :LTIEGLNELEAIIDIAKE 2p3eA 127 :FNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLL 2p3eA 175 :KFGVDIREAQKEYEYASKLENL T0547 226 :QFTMI 2p3eA 197 :EIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEY 2p3eA 235 :DIKYLDIGGGLGIKY T0547 282 :FKNEKSR 2p3eA 250 :KPEDKEP T0547 291 :TLR 2p3eA 257 :APQ T0547 301 :FILKNIAEQ 2p3eA 260 :DLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEY 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGS T0547 346 :ENKLILKKQNPKLIDE 2p3eA 304 :KHFIIVDAGMNDLIRP T0547 362 :LYDLYKSIKPSNAL 2p3eA 321 :IYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVD 2p3eA 340 :VADIVGPICETGDFLALD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYNMRP T0547 536 :AIISINEKGYEVEGII 2p3eA 392 :AEVLVENGSVKLIRKR T0547 554 :QSILDTLED 2p3eA 408 :ENYDYIVEP Number of specific fragments extracted= 21 number of extra gaps= 1 total=14737 Will force an alignment to be made, even if fragment is small Number of alignments=676 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)I306 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 Warning: unaligning (T0547)F460 because last residue in template chain is (2p3eA)I420 T0547 3 :DYG 2p3eA 3 :LLK T0547 9 :WGNENFIIKNGKVCI 2p3eA 6 :EYNPYLEYRDGELFI T0547 27 :KKPAIIDIVKE 2p3eA 21 :EGVSLKELAQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2p3eA 32 :FGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVYAGV T0547 135 :KDRELINIGF 2p3eA 111 :KTEKELTDAV T0547 148 :EMGHNIT 2p3eA 121 :DSEILMF T0547 156 :TIEGLNELEAIIDIAKE 2p3eA 128 :NVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2p3eA 175 :KFGVDIREAQKEYEYASKLENLEIVG T0547 230 :I 2p3eA 201 :I T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2p3eA 235 :DIKYLDIGGGLGIKYKPEDKEP T0547 291 :TLREYANDVVFI 2p3eA 257 :APQDLADLLKDL T0547 307 :AE 2p3eA 273 :KA T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 275 :KIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 348 :KLILKK 2p3eA 306 :FIIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNAL 2p3eA 313 :MNDLIRPSIYNAYHHIIPVETK T0547 378 :LHDSIDHLESILTLFDLGY 2p3eA 340 :VADIVGPICETGDFLALDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2p3eA 359 :EIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLV T0547 437 :QERYLVNFSLFQSMPDFWGLEQN 2p3eA 397 :ENGSVKLIRKRENYDYIVEPSLD Number of specific fragments extracted= 22 number of extra gaps= 1 total=14759 Will force an alignment to be made, even if fragment is small Number of alignments=677 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 Warning: unaligning (T0547)F460 because last residue in template chain is (2p3eA)I420 T0547 3 :D 2p3eA 3 :L T0547 9 :WGNENFIIKNGKVCI 2p3eA 6 :EYNPYLEYRDGELFI T0547 27 :KKPAIIDIVKE 2p3eA 21 :EGVSLKELAQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2p3eA 32 :FGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVY T0547 132 :NGFKDRELINIGF 2p3eA 108 :GVGKTEKELTDAV T0547 148 :EMGHNIT 2p3eA 121 :DSEILMF T0547 156 :TIEGLNELEAIIDIAKE 2p3eA 128 :NVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2p3eA 175 :KFGVDIREAQKEYEYASKLENLEIVG T0547 230 :I 2p3eA 201 :I T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2p3eA 235 :DIKYLDIGGGLGIKYKPEDKEP T0547 291 :TL 2p3eA 257 :AP T0547 299 :VVFILKNI 2p3eA 259 :QDLADLLK T0547 308 :EQ 2p3eA 267 :DL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 348 :KLILKK 2p3eA 306 :FIIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNAL 2p3eA 313 :MNDLIRPSIYNAYHHIIPVETK T0547 378 :LHDSIDHLESILTLFDLGYV 2p3eA 340 :VADIVGPICETGDFLALDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLV T0547 437 :QERYLVNFSLFQSMPDFWGLEQN 2p3eA 397 :ENGSVKLIRKRENYDYIVEPSLD Number of specific fragments extracted= 23 number of extra gaps= 1 total=14782 Will force an alignment to be made, even if fragment is small Number of alignments=678 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 Warning: unaligning (T0547)F460 because last residue in template chain is (2p3eA)I420 T0547 3 :DYGI 2p3eA 3 :LLKE T0547 10 :GNENFIIKNGKVCI 2p3eA 7 :YNPYLEYRDGELFI T0547 27 :KKPAIIDIVKE 2p3eA 21 :EGVSLKELAQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2p3eA 32 :FGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVY T0547 132 :NGFKDRELINIGF 2p3eA 108 :GVGKTEKELTDAV T0547 148 :EMGHNIT 2p3eA 121 :DSEILMF T0547 156 :TIEGLNELEAIIDIAKE 2p3eA 128 :NVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2p3eA 175 :KFGVDIREAQKEYEYASKLENLEIVG T0547 230 :I 2p3eA 201 :I T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2p3eA 235 :DIKYLDIGGGLGIKYKPEDKEP T0547 291 :TLREYANDVVFI 2p3eA 257 :APQDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 348 :KLILKK 2p3eA 306 :FIIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNAL 2p3eA 313 :MNDLIRPSIYNAYHHIIPVETK T0547 378 :LHDSIDHLESILTLFDLGY 2p3eA 340 :VADIVGPICETGDFLALDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 2p3eA 359 :EIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVE T0547 438 :ERYLVNFSLFQSMPDFWGLEQN 2p3eA 398 :NGSVKLIRKRENYDYIVEPSLD Number of specific fragments extracted= 21 number of extra gaps= 1 total=14803 Will force an alignment to be made, even if fragment is small Number of alignments=679 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 Warning: unaligning (T0547)F460 because last residue in template chain is (2p3eA)I420 T0547 3 :D 2p3eA 3 :L T0547 9 :WG 2p3eA 4 :LK T0547 12 :ENFIIKNGKVCI 2p3eA 9 :PYLEYRDGELFI T0547 27 :KKPAIIDIVKE 2p3eA 21 :EGVSLKELAQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2p3eA 32 :FGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVY T0547 132 :NGFKDRELINIGF 2p3eA 108 :GVGKTEKELTDAV T0547 148 :EMGHNIT 2p3eA 121 :DSEILMF T0547 156 :TIEGLNELEAIIDIAKE 2p3eA 128 :NVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2p3eA 175 :KFGVDIREAQKEYEYASKLENLEIVG T0547 230 :I 2p3eA 201 :I T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2p3eA 235 :DIKYLDIGGGLGIKYKPEDKEP T0547 291 :TLREYA 2p3eA 257 :APQDLA T0547 303 :LK 2p3eA 263 :DL T0547 306 :IAEQ 2p3eA 265 :LKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 348 :KLILKK 2p3eA 306 :FIIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNAL 2p3eA 313 :MNDLIRPSIYNAYHHIIPVETK T0547 378 :LHDSIDHLESILTLFDLGYV 2p3eA 340 :VADIVGPICETGDFLALDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLV T0547 437 :QERYLVNFSLFQSMPDFWGLEQN 2p3eA 397 :ENGSVKLIRKRENYDYIVEPSLD Number of specific fragments extracted= 24 number of extra gaps= 1 total=14827 Will force an alignment to be made, even if fragment is small Number of alignments=680 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 Warning: unaligning (T0547)F460 because last residue in template chain is (2p3eA)I420 T0547 3 :DYG 2p3eA 3 :LLK T0547 11 :NENFIIKNGKVCI 2p3eA 8 :NPYLEYRDGELFI T0547 27 :KKPAIIDIVKE 2p3eA 21 :EGVSLKELAQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2p3eA 32 :FGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVY T0547 132 :NGFKDRELINIGF 2p3eA 108 :GVGKTEKELTDAV T0547 148 :EMGHNIT 2p3eA 121 :DSEILMF T0547 156 :TIEGLNELEAIIDIAKE 2p3eA 128 :NVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2p3eA 175 :KFGVDIREAQKEYEYASKLENLEIVG T0547 230 :I 2p3eA 201 :I T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2p3eA 235 :DIKYLDIGGGLGIKYKPEDKEP T0547 291 :TLREYANDV 2p3eA 257 :APQDLADLL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 348 :KLILKK 2p3eA 306 :FIIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNAL 2p3eA 313 :MNDLIRPSIYNAYHHIIPVETK T0547 378 :LHDSIDHLESILTLFDLGY 2p3eA 340 :VADIVGPICETGDFLALDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2p3eA 359 :EIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLV T0547 437 :QERYLVNFSLFQSMPDFWGLEQN 2p3eA 397 :ENGSVKLIRKRENYDYIVEPSLD Number of specific fragments extracted= 21 number of extra gaps= 1 total=14848 Will force an alignment to be made, even if fragment is small Number of alignments=681 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 Warning: unaligning (T0547)F460 because last residue in template chain is (2p3eA)I420 T0547 3 :DY 2p3eA 3 :LL T0547 12 :ENFIIKNGKVCI 2p3eA 9 :PYLEYRDGELFI T0547 27 :KKPAIIDIVKE 2p3eA 21 :EGVSLKELAQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2p3eA 32 :FGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVY T0547 132 :NGFKDRELINIGF 2p3eA 108 :GVGKTEKELTDAV T0547 148 :EMGHNIT 2p3eA 121 :DSEILMF T0547 156 :TIEGLNELEAIIDIAKE 2p3eA 128 :NVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2p3eA 175 :KFGVDIREAQKEYEYASKLENLEIVG T0547 230 :I 2p3eA 201 :I T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2p3eA 235 :DIKYLDIGGGLGIKYKPEDKEP T0547 291 :TL 2p3eA 257 :AP T0547 299 :VVFILKN 2p3eA 259 :QDLADLL T0547 307 :AEQ 2p3eA 266 :KDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 348 :KLILKK 2p3eA 306 :FIIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNAL 2p3eA 313 :MNDLIRPSIYNAYHHIIPVETK T0547 378 :LHDSIDHLESILTLFDLGYV 2p3eA 340 :VADIVGPICETGDFLALDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLV T0547 437 :QERYLVNFSLFQSMPDFWGLEQN 2p3eA 397 :ENGSVKLIRKRENYDYIVEPSLD Number of specific fragments extracted= 23 number of extra gaps= 1 total=14871 Will force an alignment to be made, even if fragment is small Number of alignments=682 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)I306 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 11 :NENFIIKNGKVCI 2p3eA 8 :NPYLEYRDGELFI T0547 27 :KKPAIIDIVKE 2p3eA 21 :EGVSLKELAQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2p3eA 32 :FGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVYAGV T0547 135 :KDRELINIGF 2p3eA 111 :KTEKELTDAV T0547 148 :EMGHNIT 2p3eA 121 :DSEILMF T0547 156 :TIEGLNELEAIIDIAKE 2p3eA 128 :NVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2p3eA 175 :KFGVDIREAQKEYEYASKLENLEIVG T0547 230 :I 2p3eA 201 :I T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2p3eA 235 :DIKYLDIGGGLGIKYKPEDKEP T0547 291 :TLREYANDVVFI 2p3eA 257 :APQDLADLLKDL T0547 307 :AE 2p3eA 273 :KA T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 275 :KIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 348 :KLILKK 2p3eA 306 :FIIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNAL 2p3eA 313 :MNDLIRPSIYNAYHHIIPVETK T0547 378 :LHDSIDHLESILTLFDLGY 2p3eA 340 :VADIVGPICETGDFLALDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2p3eA 359 :EIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLV T0547 437 :QERYLVNFSLFQSMPDF 2p3eA 397 :ENGSVKLIRKRENYDYI Number of specific fragments extracted= 21 number of extra gaps= 1 total=14892 Will force an alignment to be made, even if fragment is small Number of alignments=683 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 11 :NENFIIKNGKVCI 2p3eA 8 :NPYLEYRDGELFI T0547 27 :KKPAIIDIVKE 2p3eA 21 :EGVSLKELAQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2p3eA 32 :FGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVY T0547 132 :NGFKDRELINIGF 2p3eA 108 :GVGKTEKELTDAV T0547 148 :EMGHNIT 2p3eA 121 :DSEILMF T0547 156 :TIEGLNELEAIIDIAKE 2p3eA 128 :NVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2p3eA 175 :KFGVDIREAQKEYEYASKLENLEIVG T0547 230 :I 2p3eA 201 :I T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2p3eA 235 :DIKYLDIGGGLGIKYKPEDKEP T0547 291 :TL 2p3eA 257 :AP T0547 299 :VVFILKNI 2p3eA 259 :QDLADLLK T0547 308 :EQ 2p3eA 267 :DL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 348 :KLILKK 2p3eA 306 :FIIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNAL 2p3eA 313 :MNDLIRPSIYNAYHHIIPVETK T0547 378 :LHDSIDHLESILTLFDLGYV 2p3eA 340 :VADIVGPICETGDFLALDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLV T0547 437 :QERYLVNFSLFQSMPDFWG 2p3eA 397 :ENGSVKLIRKRENYDYIVE Number of specific fragments extracted= 22 number of extra gaps= 1 total=14914 Will force an alignment to be made, even if fragment is small Number of alignments=684 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 12 :ENFIIKNGKVCI 2p3eA 9 :PYLEYRDGELFI T0547 27 :KKPAIIDIVKE 2p3eA 21 :EGVSLKELAQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2p3eA 32 :FGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVY T0547 132 :NGFKDRELINIGF 2p3eA 108 :GVGKTEKELTDAV T0547 148 :EMGHNIT 2p3eA 121 :DSEILMF T0547 156 :TIEGLNELEAIIDIAKE 2p3eA 128 :NVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2p3eA 175 :KFGVDIREAQKEYEYASKLENLEIVG T0547 230 :I 2p3eA 201 :I T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2p3eA 235 :DIKYLDIGGGLGIKYKPEDKEP T0547 291 :TLREYANDVVFI 2p3eA 257 :APQDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 348 :KLILKK 2p3eA 306 :FIIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNAL 2p3eA 313 :MNDLIRPSIYNAYHHIIPVETK T0547 378 :LHDSIDHLESILTLFDLGY 2p3eA 340 :VADIVGPICETGDFLALDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 2p3eA 359 :EIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVE T0547 438 :ERYLVNFSLFQSMPDFW 2p3eA 398 :NGSVKLIRKRENYDYIV Number of specific fragments extracted= 20 number of extra gaps= 1 total=14934 Will force an alignment to be made, even if fragment is small Number of alignments=685 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 12 :ENFIIKNGKVCI 2p3eA 9 :PYLEYRDGELFI T0547 27 :KKPAIIDIVKE 2p3eA 21 :EGVSLKELAQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2p3eA 32 :FGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVY T0547 132 :NGFKDRELINIGF 2p3eA 108 :GVGKTEKELTDAV T0547 148 :EMGHNIT 2p3eA 121 :DSEILMF T0547 156 :TIEGLNELEAIIDIAKE 2p3eA 128 :NVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2p3eA 175 :KFGVDIREAQKEYEYASKLENLEIVG T0547 230 :I 2p3eA 201 :I T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2p3eA 235 :DIKYLDIGGGLGIKYKPEDKEP T0547 291 :TLREYA 2p3eA 257 :APQDLA T0547 303 :LK 2p3eA 263 :DL T0547 306 :IAEQ 2p3eA 265 :LKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 348 :KLILKK 2p3eA 306 :FIIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNAL 2p3eA 313 :MNDLIRPSIYNAYHHIIPVETK T0547 378 :LHDSIDHLESILTLFDLGYV 2p3eA 340 :VADIVGPICETGDFLALDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2p3eA 397 :ENGSVKLIRKRENYDYIVEPSL Number of specific fragments extracted= 22 number of extra gaps= 1 total=14956 Will force an alignment to be made, even if fragment is small Number of alignments=686 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 12 :ENFIIKNGKVCI 2p3eA 9 :PYLEYRDGELFI T0547 27 :KKPAIIDIVKE 2p3eA 21 :EGVSLKELAQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2p3eA 32 :FGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVY T0547 132 :NGFKDRELINIGF 2p3eA 108 :GVGKTEKELTDAV T0547 148 :EMGHNIT 2p3eA 121 :DSEILMF T0547 156 :TIEGLNELEAIIDIAKE 2p3eA 128 :NVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2p3eA 175 :KFGVDIREAQKEYEYASKLENLEIVG T0547 230 :I 2p3eA 201 :I T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2p3eA 235 :DIKYLDIGGGLGIKYKPEDKEP T0547 291 :TLREYANDV 2p3eA 257 :APQDLADLL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 348 :KLILKK 2p3eA 306 :FIIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNAL 2p3eA 313 :MNDLIRPSIYNAYHHIIPVETK T0547 378 :LHDSIDHLESILTLFDLGY 2p3eA 340 :VADIVGPICETGDFLALDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2p3eA 359 :EIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2p3eA 397 :ENGSVKLIRKRENYDYIVEPSL Number of specific fragments extracted= 20 number of extra gaps= 1 total=14976 Will force an alignment to be made, even if fragment is small Number of alignments=687 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 12 :ENFIIKNGKVCI 2p3eA 9 :PYLEYRDGELFI T0547 27 :KKPAIIDIVKE 2p3eA 21 :EGVSLKELAQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2p3eA 32 :FGTPLYVYSSNFIKERFEAYRKAF T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2p3eA 56 :PDALICYAVKANFNPHLVKLLGELGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2p3eA 82 :GADIVSGGELYLAKKAGIPPERIVY T0547 132 :NGFKDRELINIGF 2p3eA 108 :GVGKTEKELTDAV T0547 148 :EMGHNIT 2p3eA 121 :DSEILMF T0547 156 :TIEGLNELEAIIDIAKE 2p3eA 128 :NVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 2p3eA 175 :KFGVDIREAQKEYEYASKLENLEIVG T0547 230 :I 2p3eA 201 :I T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKMGA 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQKGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 2p3eA 235 :DIKYLDIGGGLGIKYKPEDKEP T0547 291 :TL 2p3eA 257 :AP T0547 299 :VVFILKN 2p3eA 259 :QDLADLL T0547 307 :AEQ 2p3eA 266 :KDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKH T0547 348 :KLILKK 2p3eA 306 :FIIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNAL 2p3eA 313 :MNDLIRPSIYNAYHHIIPVETK T0547 378 :LHDSIDHLESILTLFDLGYV 2p3eA 340 :VADIVGPICETGDFLALDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2p3eA 360 :IEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLV T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 2p3eA 397 :ENGSVKLIRKRENYDYIVEPSL Number of specific fragments extracted= 22 number of extra gaps= 1 total=14998 Will force an alignment to be made, even if fragment is small Number of alignments=688 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 3 :D 2p3eA 3 :L T0547 15 :IIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2p3eA 4 :LKEYNPYLEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 57 :DALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEIL T0547 154 :TLTIEGLNELEAIIDIAKE 2p3eA 126 :MFNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENK 2p3eA 175 :KFGVDIREAQKEYEYASKLE T0547 224 :LEQFTMI 2p3eA 195 :NLEIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKM 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQK T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2p3eA 233 :GFDIKYLDIGGGLGIKYKPEDKEPAP T0547 293 :REYANDV 2p3eA 259 :QDLADLL T0547 307 :AEQ 2p3eA 266 :KDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNAL 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVDLQDR 2p3eA 340 :VADIVGPICETGDFLALDREIE T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 2p3eA 363 :VQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDYIVEPSLD Number of specific fragments extracted= 15 number of extra gaps= 1 total=15013 Will force an alignment to be made, even if fragment is small Number of alignments=689 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 18 :NGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2p3eA 7 :YNPYLEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 57 :DALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEIL T0547 154 :TLTIEGLNELEAIIDIAKE 2p3eA 126 :MFNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENK 2p3eA 175 :KFGVDIREAQKEYEYASKLE T0547 224 :LEQFTMI 2p3eA 195 :NLEIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKM 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQK T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2p3eA 233 :GFDIKYLDIGGGLGIKYKPEDKEPAP T0547 300 :VFILKNIAEQ 2p3eA 259 :QDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNAL 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVDLQDR 2p3eA 340 :VADIVGPICETGDFLALDREIE T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 2p3eA 363 :VQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDYIVEPS T0547 609 :IGV 2p3eA 418 :LDI Number of specific fragments extracted= 14 number of extra gaps= 1 total=15027 Will force an alignment to be made, even if fragment is small Number of alignments=690 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 3 :DYG 2p3eA 3 :LLK T0547 17 :KNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2p3eA 6 :EYNPYLEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFPD T0547 79 :FNAVYPLKVNQYPGFVKNLVKLG 2p3eA 58 :ALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEIL T0547 154 :TLTIEGLNELEAIIDIAKE 2p3eA 126 :MFNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENK 2p3eA 175 :KFGVDIREAQKEYEYASKLE T0547 224 :LEQFTMI 2p3eA 195 :NLEIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKM 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQK T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2p3eA 233 :GFDIKYLDIGGGLGIKYKPEDKEP T0547 295 :YANDVVFILKN 2p3eA 257 :APQDLADLLKD T0547 309 :Q 2p3eA 268 :L T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNAL 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVDLQDR 2p3eA 340 :VADIVGPICETGDFLALDREIE T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2p3eA 363 :VQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDYIVEPSL T0547 610 :GV 2p3eA 419 :DI Number of specific fragments extracted= 16 number of extra gaps= 1 total=15043 Will force an alignment to be made, even if fragment is small Number of alignments=691 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 Warning: unaligning (T0547)F460 because last residue in template chain is (2p3eA)I420 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2p3eA 11 :LEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 57 :DALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEIL T0547 154 :TLTIEGLNELEAIIDIAKE 2p3eA 126 :MFNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENK 2p3eA 175 :KFGVDIREAQKEYEYASKLE T0547 224 :LEQFTMI 2p3eA 195 :NLEIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKM 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQK T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSRNYT 2p3eA 233 :GFDIKYLDIGGGLGIKYKPEDKEPAPQDL T0547 303 :LKNIAEQ 2p3eA 262 :ADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNAL 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVDLQDR 2p3eA 340 :VADIVGPICETGDFLALDREIE T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 2p3eA 363 :VQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDYIVEPSLD Number of specific fragments extracted= 13 number of extra gaps= 1 total=15056 Will force an alignment to be made, even if fragment is small Number of alignments=692 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 3 :D 2p3eA 3 :L T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2p3eA 11 :LEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 57 :DALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEIL T0547 154 :TLTIEGLNELEAIIDIAKE 2p3eA 126 :MFNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENK 2p3eA 175 :KFGVDIREAQKEYEYASKLE T0547 224 :LEQFTMI 2p3eA 195 :NLEIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKM 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQK T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2p3eA 233 :GFDIKYLDIGGGLGIKYKPEDKEP T0547 291 :TLREYANDV 2p3eA 257 :APQDLADLL T0547 309 :Q 2p3eA 266 :K T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNAL 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVDLQDR 2p3eA 340 :VADIVGPICETGDFLALDREIE T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 2p3eA 363 :VQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDYIVEPSLD Number of specific fragments extracted= 15 number of extra gaps= 1 total=15071 Will force an alignment to be made, even if fragment is small Number of alignments=693 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2p3eA)E2 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)D312 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 Warning: unaligning (T0547)F460 because last residue in template chain is (2p3eA)I420 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2p3eA 11 :LEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 57 :DALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEIL T0547 154 :TLTIEGLNELEAIIDIAKE 2p3eA 126 :MFNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENK 2p3eA 175 :KFGVDIREAQKEYEYASKLE T0547 224 :LEQFTMI 2p3eA 195 :NLEIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKM 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQK T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2p3eA 233 :GFDIKYLDIGGGLGIKYKPEDKEPAP T0547 302 :ILKNIAEQKK 2p3eA 259 :QDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNAL 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVDLQDR 2p3eA 340 :VADIVGPICETGDFLALDREIE T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 2p3eA 363 :VQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDYIVEPSLD Number of specific fragments extracted= 13 number of extra gaps= 1 total=15084 Will force an alignment to be made, even if fragment is small Number of alignments=694 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 21 :VCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2p3eA 10 :YLEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 57 :DALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEIL T0547 154 :TLTIEGLNELEAIIDIAKE 2p3eA 126 :MFNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENK 2p3eA 175 :KFGVDIREAQKEYEYASKLE T0547 224 :LEQFTMI 2p3eA 195 :NLEIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKM 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQK T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2p3eA 233 :GFDIKYLDIGGGLGIKYKPEDKEPAP T0547 293 :REYANDV 2p3eA 259 :QDLADLL T0547 307 :AEQ 2p3eA 266 :KDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNAL 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVDLQDR 2p3eA 340 :VADIVGPICETGDFLALDREIE T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPD 2p3eA 363 :VQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDY Number of specific fragments extracted= 14 number of extra gaps= 1 total=15098 Will force an alignment to be made, even if fragment is small Number of alignments=695 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 23 :INYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2p3eA 12 :EYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 57 :DALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEIL T0547 154 :TLTIEGLNELEAIIDIAKE 2p3eA 126 :MFNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENK 2p3eA 175 :KFGVDIREAQKEYEYASKLE T0547 224 :LEQFTMI 2p3eA 195 :NLEIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKM 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQK T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2p3eA 233 :GFDIKYLDIGGGLGIKYKPEDKEPAP T0547 300 :VFILKNIAEQ 2p3eA 259 :QDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNAL 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVDLQDR 2p3eA 340 :VADIVGPICETGDFLALDREIE T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 2p3eA 363 :VQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDYIVEPS Number of specific fragments extracted= 13 number of extra gaps= 1 total=15111 Will force an alignment to be made, even if fragment is small Number of alignments=696 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2p3eA 11 :LEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFPD T0547 79 :FNAVYPLKVNQYPGFVKNLVKLG 2p3eA 58 :ALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEIL T0547 154 :TLTIEGLNELEAIIDIAKE 2p3eA 126 :MFNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENK 2p3eA 175 :KFGVDIREAQKEYEYASKLE T0547 224 :LEQFTMI 2p3eA 195 :NLEIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKM 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQK T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2p3eA 233 :GFDIKYLDIGGGLGIKYKPEDKEP T0547 295 :YANDVVFILKN 2p3eA 257 :APQDLADLLKD T0547 309 :Q 2p3eA 268 :L T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNAL 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVDLQDR 2p3eA 340 :VADIVGPICETGDFLALDREIE T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 2p3eA 363 :VQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDYIVEPS Number of specific fragments extracted= 14 number of extra gaps= 1 total=15125 Will force an alignment to be made, even if fragment is small Number of alignments=697 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2p3eA 11 :LEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 57 :DALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEIL T0547 154 :TLTIEGLNELEAIIDIAKE 2p3eA 126 :MFNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENK 2p3eA 175 :KFGVDIREAQKEYEYASKLE T0547 224 :LEQFTMI 2p3eA 195 :NLEIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKM 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQK T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSRNYT 2p3eA 233 :GFDIKYLDIGGGLGIKYKPEDKEPAPQDL T0547 303 :LKNIAEQ 2p3eA 262 :ADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNAL 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVDLQDR 2p3eA 340 :VADIVGPICETGDFLALDREIE T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2p3eA 363 :VQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDYIVEPSL Number of specific fragments extracted= 13 number of extra gaps= 1 total=15138 Will force an alignment to be made, even if fragment is small Number of alignments=698 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2p3eA 11 :LEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 57 :DALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEIL T0547 154 :TLTIEGLNELEAIIDIAKE 2p3eA 126 :MFNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENK 2p3eA 175 :KFGVDIREAQKEYEYASKLE T0547 224 :LEQFTMI 2p3eA 195 :NLEIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKM 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQK T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2p3eA 233 :GFDIKYLDIGGGLGIKYKPEDKEP T0547 291 :TLREYANDV 2p3eA 257 :APQDLADLL T0547 309 :Q 2p3eA 266 :K T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNAL 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVDLQDR 2p3eA 340 :VADIVGPICETGDFLALDREIE T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2p3eA 363 :VQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDYIVEPSL Number of specific fragments extracted= 14 number of extra gaps= 1 total=15152 Will force an alignment to be made, even if fragment is small Number of alignments=699 # 2p3eA read from all-align.a2m # found chain 2p3eA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)S174 Warning: unaligning (T0547)S202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)S174 Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2p3eA)C203 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2p3eA)C203 Warning: unaligning (T0547)D312 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V272 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V272 Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2p3eA)V339 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2p3eA)V339 T0547 22 :CINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2p3eA 11 :LEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2p3eA 57 :DALICYAVKANFNPHLVKLLGELG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2p3eA 81 :AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEIL T0547 154 :TLTIEGLNELEAIIDIAKE 2p3eA 126 :MFNVESRQELDVLNEIAGK T0547 174 :FKPKPNIGLRVR 2p3eA 145 :LGKKARIAIRVN T0547 203 :KFGLTSTELIEAVNLLKENK 2p3eA 175 :KFGVDIREAQKEYEYASKLE T0547 224 :LEQFTMI 2p3eA 195 :NLEIVGI T0547 233 :HLGSQITEIHPLKKALNEAGNIYTELRKM 2p3eA 204 :HIGSQILDISPYREAVEKVVSLYESLTQK T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2p3eA 233 :GFDIKYLDIGGGLGIKYKPEDKEPAP T0547 302 :ILKNIAEQKK 2p3eA 259 :QDLADLLKDL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNAL 2p3eA 273 :KAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETK T0547 381 :SIDHLESILTLFDLGYVDLQDR 2p3eA 340 :VADIVGPICETGDFLALDREIE T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2p3eA 363 :VQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDYIVEPSL Number of specific fragments extracted= 13 number of extra gaps= 1 total=15165 Will force an alignment to be made, even if fragment is small Number of alignments=700 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)K20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)P16 Warning: unaligning (T0547)Y25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)N541 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)E542 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 18 :NG 2pljA 9 :DI T0547 26 :EKKPAIIDIVKELRD 2pljA 17 :VLSAEEIHLIEASVE T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 2pljA 32 :QFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHT T0547 133 :GFKDRELINIGF 2pljA 110 :PIKRDADIRDAL T0547 150 :GHNI 2pljA 122 :AYGC T0547 154 :TLTIEGLNELEAIIDIAKERF 2pljA 127 :VFVVDNLNELEKFKAYRDDVE T0547 180 :IGLRVR 2pljA 148 :LLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LE 2pljA 186 :IR T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQF 2pljA 188 :IKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQ T0547 289 :NYTLREYANDVVFILKNI 2pljA 244 :VMPIDQFCAPINEALSLL T0547 312 :DLEPDIFIESGRFVAANHAVLIAPVLELFSQEYA 2pljA 262 :PETVHVLAEPGRFICAPAVTSVASVMGQAEREGQ T0547 438 :ERYLVNFSLFQSMPDFW 2pljA 296 :IWYYLDDGIYGSFSGLM T0547 456 :LEQNFPIMPLDR 2pljA 313 :FDDARYPLTTIK T0547 469 :DEEPTRSASIWDITCDSDGEI 2pljA 325 :QGGELIPSVLSGPTCDSVDVI T0547 494 :DKPLFLHDVDVEK 2pljA 346 :AENILLPKLNNGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIISI 2pljA 359 :LVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 19 number of extra gaps= 1 total=15184 Will force an alignment to be made, even if fragment is small Number of alignments=701 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 T0547 31 :IIDIVKELRD 2pljA 22 :EIHLIEASVE T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 2pljA 32 :QFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHT T0547 133 :GFKDRELINIGF 2pljA 110 :PIKRDADIRDAL T0547 150 :GHNI 2pljA 122 :AYGC T0547 154 :TLTIEGLNELEAIIDIAKERF 2pljA 127 :VFVVDNLNELEKFKAYRDDVE T0547 180 :IGLRVR 2pljA 148 :LLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LE 2pljA 186 :IR T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQF 2pljA 188 :IKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQ T0547 289 :NYTLREYANDVVFILKNI 2pljA 244 :VMPIDQFCAPINEALSLL T0547 312 :DLEPDIFIESGRFVAANHAVLIAPVLELFSQEYA 2pljA 262 :PETVHVLAEPGRFICAPAVTSVASVMGQAEREGQ T0547 438 :ERYLVNFSLFQSMPDFW 2pljA 296 :IWYYLDDGIYGSFSGLM T0547 456 :LEQNFPIMPLDR 2pljA 313 :FDDARYPLTTIK T0547 469 :DEEPTRSASIWDITCDSDGEI 2pljA 325 :QGGELIPSVLSGPTCDSVDVI T0547 494 :DKPLFLHDVDVEK 2pljA 346 :AENILLPKLNNGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAII 2pljA 359 :LVIGRTMGAYTSATATDFNFFKRAQTIAL Number of specific fragments extracted= 18 number of extra gaps= 0 total=15202 Will force an alignment to be made, even if fragment is small Number of alignments=702 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)G19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)N541 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)E542 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 20 :KVCIN 2pljA 17 :VLSAE T0547 31 :IIDIVKELRD 2pljA 22 :EIHLIEASVE T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 2pljA 32 :QFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINI 2pljA 109 :HPIKRDADIRD T0547 146 :AAEMGHNI 2pljA 120 :ALAYGCNV T0547 155 :LTIEGLNELEAIIDIAKE 2pljA 128 :FVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LE 2pljA 186 :IR T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2pljA 188 :IKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNY T0547 286 :KSRNYTLREYANDVVFILKNI 2pljA 241 :TQQVMPIDQFCAPINEALSLL T0547 312 :DLEPDIFIESGRFVAANHAVLIAPVL 2pljA 262 :PETVHVLAEPGRFICAPAVTSVASVM T0547 434 :DEVQERYLVNFSLFQSMPDFW 2pljA 292 :REGQIWYYLDDGIYGSFSGLM T0547 456 :LEQNFPIMPLDR 2pljA 313 :FDDARYPLTTIK T0547 469 :DEEPTRSASIWDITCDSDGEISYS 2pljA 325 :QGGELIPSVLSGPTCDSVDVIAEN T0547 497 :LFLHDVDVEK 2pljA 349 :ILLPKLNNGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIISI 2pljA 359 :LVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 19 number of extra gaps= 1 total=15221 Will force an alignment to be made, even if fragment is small Number of alignments=703 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 T0547 29 :PAIIDIVKELRD 2pljA 20 :AEEIHLIEASVE T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 2pljA 32 :QFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINI 2pljA 109 :HPIKRDADIRD T0547 146 :AAEMGHNI 2pljA 120 :ALAYGCNV T0547 155 :LTIEGLNELEAIIDIAKE 2pljA 128 :FVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LE 2pljA 186 :IR T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2pljA 188 :IKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNY T0547 286 :KSRNYTLREYANDVVFILKNI 2pljA 241 :TQQVMPIDQFCAPINEALSLL T0547 312 :DLEPDIFIESGRFVAANHAVLIAPVL 2pljA 262 :PETVHVLAEPGRFICAPAVTSVASVM T0547 434 :DEVQERYLVNFSLFQSMPDFW 2pljA 292 :REGQIWYYLDDGIYGSFSGLM T0547 456 :LEQNFPIMPLDR 2pljA 313 :FDDARYPLTTIK T0547 469 :DEEPTRSASIWDITCDSDGEISYS 2pljA 325 :QGGELIPSVLSGPTCDSVDVIAEN T0547 497 :LFLHDVDVEK 2pljA 349 :ILLPKLNNGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAII 2pljA 359 :LVIGRTMGAYTSATATDFNFFKRAQTIAL Number of specific fragments extracted= 18 number of extra gaps= 0 total=15239 Will force an alignment to be made, even if fragment is small Number of alignments=704 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N541 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 T0547 34 :I 2pljA 23 :I T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2pljA 25 :LIEASVEQFGAPLLLLDCDVIRQQYRALKNALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2pljA 58 :NVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNE 2pljA 82 :ASFDLATTGEVELVASEGVP T0547 126 :GAPITVNGFKDRELINIGFI 2pljA 103 :DLTIHTHPIKRDADIRDALA T0547 149 :MGH 2pljA 123 :YGC T0547 153 :ITLTIEGLNELEAIIDIAKE 2pljA 126 :NVFVVDNLNELEKFKAYRDD T0547 174 :FKPKPNIG 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQ 2pljA 186 :IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQ T0547 293 :REYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2pljA 243 :QVMPIDQFCAPINEALSLLPETVHVLAEPGRFICAPAVTSVASVMGQAER T0547 435 :EVQERYLVNFSLFQSMPDFWGLEQNFPIMPLD 2pljA 293 :EGQIWYYLDDGIYGSFSGLMFDDARYPLTTIK T0547 469 :DEEPTRSASIWDITCDSDGEISYSKDKP 2pljA 325 :QGGELIPSVLSGPTCDSVDVIAENILLP T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISI 2pljA 353 :KLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 14 number of extra gaps= 1 total=15253 Will force an alignment to be made, even if fragment is small Number of alignments=705 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2pljA 26 :IEASVEQFGAPLLLLDCDVIRQQYRALKNALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2pljA 58 :NVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNE 2pljA 82 :ASFDLATTGEVELVASEGVP T0547 126 :GAPITVNGFKDRELINIGFI 2pljA 103 :DLTIHTHPIKRDADIRDALA T0547 149 :MGH 2pljA 123 :YGC T0547 153 :ITLTIEGLNELEAIIDIAKE 2pljA 126 :NVFVVDNLNELEKFKAYRDD T0547 174 :FKPKPNIG 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQ 2pljA 186 :IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQ T0547 293 :REYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 2pljA 243 :QVMPIDQFCAPINEALSLLPETVHVLAEPGRFICAPAVTSVASVMGQAER T0547 435 :EVQERYLVNFSLFQSMPDFWGLEQNFPIMPLD 2pljA 293 :EGQIWYYLDDGIYGSFSGLMFDDARYPLTTIK T0547 469 :DEEPTRSASIWDITCDSDGEISYSKDKP 2pljA 325 :QGGELIPSVLSGPTCDSVDVIAENILLP T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEA 2pljA 353 :KLNNGDLVIGRTMGAYTSATATDFNFFKRAQTI Number of specific fragments extracted= 13 number of extra gaps= 0 total=15266 Will force an alignment to be made, even if fragment is small Number of alignments=706 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)C22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)P16 Warning: unaligning (T0547)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)K196 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)E438 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 19 :GKV 2pljA 8 :FDI T0547 28 :KPAIIDIVKEL 2pljA 17 :VLSAEEIHLIE T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNF 2pljA 29 :SVEQFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2pljA 83 :SFDLATTGEVELVASEGVPADLTIHTHPIKRD T0547 140 :INIGF 2pljA 115 :ADIRD T0547 146 :AAEMGHNI 2pljA 120 :ALAYGCNV T0547 155 :LTIEGLNELEAIIDIAKE 2pljA 128 :FVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 197 :S 2pljA 165 :K T0547 203 :KFGLTSTELIEAVNLLKENKL 2pljA 166 :KFGCSPEQALVIIETAKEWNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2pljA 187 :RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNY T0547 284 :NEKSR 2pljA 241 :TQQVM T0547 291 :TLREYANDVVFILKNIA 2pljA 246 :PIDQFCAPINEALSLLP T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2pljA 263 :ETVHVLAEPGRFICAPAVTSVASVMGQAEREG T0547 346 :ENKLILKKQNPKLIDE 2pljA 295 :QIWYYLDDGIYGSFSG T0547 362 :LYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVD 2pljA 312 :MFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAEN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 18 number of extra gaps= 1 total=15284 Will force an alignment to be made, even if fragment is small Number of alignments=707 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)E12 because first residue in template chain is (2pljA)H3 Warning: unaligning (T0547)C22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)P16 Warning: unaligning (T0547)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)K196 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)V436 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)Q437 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 13 :NFIIK 2pljA 4 :SQSIF T0547 20 :KV 2pljA 9 :DI T0547 28 :KPAIIDIVKELRDD 2pljA 17 :VLSAEEIHLIEASV T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 2pljA 32 :QFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2pljA 83 :SFDLATTGEVELVASEGVPADLTIHTHPIKRD T0547 140 :INIGF 2pljA 115 :ADIRD T0547 146 :AAEMGHNI 2pljA 120 :ALAYGCNV T0547 155 :LTIEGLNELEAIIDIAKE 2pljA 128 :FVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 197 :S 2pljA 165 :K T0547 203 :KFGLTSTELIEAVNLLKENKL 2pljA 166 :KFGCSPEQALVIIETAKEWNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVE 2pljA 187 :RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVN T0547 283 :KNEKSR 2pljA 240 :YTQQVM T0547 291 :TLREYANDVVFILK 2pljA 246 :PIDQFCAPINEALS T0547 309 :QKK 2pljA 260 :LLP T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2pljA 263 :ETVHVLAEPGRFICAPAVTSVASVMGQAEREG T0547 346 :ENKLILKKQNPKLIDE 2pljA 295 :QIWYYLDDGIYGSFSG T0547 362 :LYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVD 2pljA 312 :MFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAEN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFN T0547 426 :PADLLAIQDE 2pljA 380 :KRAQTIALNE Number of specific fragments extracted= 21 number of extra gaps= 1 total=15305 Will force an alignment to be made, even if fragment is small Number of alignments=708 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (2pljA)H3 Warning: unaligning (T0547)E26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)K196 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)G487 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 22 :CINY 2pljA 4 :SQSI T0547 28 :KPAIIDIVK 2pljA 17 :VLSAEEIHL T0547 37 :ELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2pljA 27 :EASVEQFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRD T0547 140 :INIGF 2pljA 115 :ADIRD T0547 146 :AAEMGHNI 2pljA 120 :ALAYGCNV T0547 155 :LTIEGLNELEAIIDIAKE 2pljA 128 :FVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 197 :S 2pljA 165 :K T0547 203 :KFGLTSTELIEAVNLLKENKL 2pljA 166 :KFGCSPEQALVIIETAKEWNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVE 2pljA 187 :RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVN T0547 282 :FKNEKS 2pljA 240 :YTQQVM T0547 291 :TLREYANDVVFILKNIA 2pljA 246 :PIDQFCAPINEALSLLP T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2pljA 263 :ETVHVLAEPGRFICAPAVTSVASVMGQAEREG T0547 346 :ENKLILKKQNPKLIDE 2pljA 295 :QIWYYLDDGIYGSFSG T0547 362 :LYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVD 2pljA 312 :MFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAEN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFK T0547 429 :LLAIQDE 2pljA 383 :QTIALNE Number of specific fragments extracted= 19 number of extra gaps= 1 total=15324 Will force an alignment to be made, even if fragment is small Number of alignments=709 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)G19 because first residue in template chain is (2pljA)H3 Warning: unaligning (T0547)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)K196 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)G487 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 20 :KVCINYE 2pljA 4 :SQSIFDI T0547 28 :KPAIIDIVKELRDD 2pljA 17 :VLSAEEIHLIEASV T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 2pljA 32 :QFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2pljA 83 :SFDLATTGEVELVASEGVPADLTIHTHPIKRD T0547 140 :INIGF 2pljA 115 :ADIRD T0547 146 :AAEMGHNI 2pljA 120 :ALAYGCNV T0547 155 :LTIEGLNELEAIIDIAKE 2pljA 128 :FVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 197 :S 2pljA 165 :K T0547 203 :KFGLTSTELIEAVNLLKENKL 2pljA 166 :KFGCSPEQALVIIETAKEWNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVE 2pljA 187 :RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVN T0547 283 :KNEKSR 2pljA 240 :YTQQVM T0547 291 :TLREYANDVVFILKNIA 2pljA 246 :PIDQFCAPINEALSLLP T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2pljA 263 :ETVHVLAEPGRFICAPAVTSVASVMGQAEREG T0547 346 :ENKLILKKQNPKLIDE 2pljA 295 :QIWYYLDDGIYGSFSG T0547 362 :LYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVD 2pljA 312 :MFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAEN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFN T0547 426 :PADLLAIQ 2pljA 380 :KRAQTIAL T0547 484 :DS 2pljA 388 :NE Number of specific fragments extracted= 20 number of extra gaps= 1 total=15344 Will force an alignment to be made, even if fragment is small Number of alignments=710 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (2pljA)H3 Warning: unaligning (T0547)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)P16 Warning: unaligning (T0547)I34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)G487 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 22 :CINYEKK 2pljA 4 :SQSIFDI T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2pljA 25 :LIEASVEQFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRD T0547 140 :INIGF 2pljA 115 :ADIRD T0547 146 :AAEMGHNI 2pljA 120 :ALAYGCNV T0547 155 :LTIEGLNELE 2pljA 128 :FVVDNLNELE T0547 169 :IAKE 2pljA 138 :KFKA T0547 174 :FKPKPNIGLRVR 2pljA 142 :YRDDVELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENKL 2pljA 165 :KKFGCSPEQALVIIETAKEWNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2pljA 187 :RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNY T0547 283 :KNE 2pljA 241 :TQQ T0547 287 :SR 2pljA 244 :VM T0547 291 :TLREYANDVVFIL 2pljA 246 :PIDQFCAPINEAL T0547 308 :E 2pljA 259 :S T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2pljA 260 :LLPETVHVLAEPGRFICAPAVTSVASVMGQAEREG T0547 346 :ENKLILKKQNPKLIDELY 2pljA 295 :QIWYYLDDGIYGSFSGLM T0547 366 :YKSIKPS 2pljA 313 :FDDARYP T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 2pljA 323 :IKQGGELIPSVLSGPTCDSVDVIAEN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFK T0547 478 :IWDITCDS 2pljA 382 :AQTIALNE Number of specific fragments extracted= 21 number of extra gaps= 1 total=15365 Will force an alignment to be made, even if fragment is small Number of alignments=711 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)F14 because first residue in template chain is (2pljA)H3 Warning: unaligning (T0547)C22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)P16 Warning: unaligning (T0547)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)K196 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)G487 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 15 :IIKNGKV 2pljA 4 :SQSIFDI T0547 28 :KPAIIDIVKELRDD 2pljA 17 :VLSAEEIHLIEASV T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 2pljA 32 :QFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2pljA 83 :SFDLATTGEVELVASEGVPADLTIHTHPIKRD T0547 140 :INIGF 2pljA 115 :ADIRD T0547 146 :AAEMGHNI 2pljA 120 :ALAYGCNV T0547 155 :LTIEGLNELEAIIDIAKE 2pljA 128 :FVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 197 :S 2pljA 165 :K T0547 203 :KFGLTSTELIEAVNLLKENKL 2pljA 166 :KFGCSPEQALVIIETAKEWNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVE 2pljA 187 :RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVN T0547 283 :KNEKSR 2pljA 240 :YTQQVM T0547 291 :TLREYANDVVFIL 2pljA 246 :PIDQFCAPINEAL T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2pljA 259 :SLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREG T0547 346 :ENKLILKKQNPKLIDE 2pljA 295 :QIWYYLDDGIYGSFSG T0547 362 :LYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVD 2pljA 312 :MFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAEN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFK T0547 430 :L 2pljA 382 :A T0547 479 :WDITCDS 2pljA 383 :QTIALNE Number of specific fragments extracted= 20 number of extra gaps= 1 total=15385 Will force an alignment to be made, even if fragment is small Number of alignments=712 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)C22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)P16 Warning: unaligning (T0547)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)K196 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 T0547 19 :GKV 2pljA 8 :FDI T0547 28 :KPAIIDIVKEL 2pljA 17 :VLSAEEIHLIE T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNF 2pljA 29 :SVEQFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2pljA 83 :SFDLATTGEVELVASEGVPADLTIHTHPIKRD T0547 140 :INIGF 2pljA 115 :ADIRD T0547 146 :AAEMGHNI 2pljA 120 :ALAYGCNV T0547 155 :LTIEGLNELEAIIDIAKE 2pljA 128 :FVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 197 :S 2pljA 165 :K T0547 203 :KFGLTSTELIEAVNLLKENKL 2pljA 166 :KFGCSPEQALVIIETAKEWNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2pljA 187 :RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNY T0547 284 :NEKSR 2pljA 241 :TQQVM T0547 291 :TLREYANDVVFILKNIA 2pljA 246 :PIDQFCAPINEALSLLP T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2pljA 263 :ETVHVLAEPGRFICAPAVTSVASVMGQAEREG T0547 346 :ENKLILKKQNPKLIDE 2pljA 295 :QIWYYLDDGIYGSFSG T0547 362 :LYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVD 2pljA 312 :MFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAEN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLL 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFKRA Number of specific fragments extracted= 18 number of extra gaps= 0 total=15403 Will force an alignment to be made, even if fragment is small Number of alignments=713 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)C22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)P16 Warning: unaligning (T0547)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)K196 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)V436 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)Q437 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 18 :NG 2pljA 9 :DI T0547 28 :KPAIIDIVKELRDD 2pljA 17 :VLSAEEIHLIEASV T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 2pljA 32 :QFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2pljA 83 :SFDLATTGEVELVASEGVPADLTIHTHPIKRD T0547 140 :INIGF 2pljA 115 :ADIRD T0547 146 :AAEMGHNI 2pljA 120 :ALAYGCNV T0547 155 :LTIEGLNELEAIIDIAKE 2pljA 128 :FVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 197 :S 2pljA 165 :K T0547 203 :KFGLTSTELIEAVNLLKENKL 2pljA 166 :KFGCSPEQALVIIETAKEWNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVE 2pljA 187 :RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVN T0547 283 :KNEKSR 2pljA 240 :YTQQVM T0547 291 :TLREYANDVVFILK 2pljA 246 :PIDQFCAPINEALS T0547 309 :QKK 2pljA 260 :LLP T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2pljA 263 :ETVHVLAEPGRFICAPAVTSVASVMGQAEREG T0547 346 :ENKLILKKQNPKLIDE 2pljA 295 :QIWYYLDDGIYGSFSG T0547 362 :LYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVD 2pljA 312 :MFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAEN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFN T0547 426 :PADLLAIQDE 2pljA 380 :KRAQTIALNE Number of specific fragments extracted= 20 number of extra gaps= 1 total=15423 Will force an alignment to be made, even if fragment is small Number of alignments=714 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)K196 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)V436 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)Q437 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2pljA 26 :IEASVEQFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRD T0547 140 :INIGF 2pljA 115 :ADIRD T0547 146 :AAEMGHNI 2pljA 120 :ALAYGCNV T0547 155 :LTIEGLNELEAIIDIAKE 2pljA 128 :FVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 197 :S 2pljA 165 :K T0547 203 :KFGLTSTELIEAVNLLKENKL 2pljA 166 :KFGCSPEQALVIIETAKEWNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVE 2pljA 187 :RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVN T0547 282 :FKNEKS 2pljA 240 :YTQQVM T0547 291 :TLREYANDVVFILKNIA 2pljA 246 :PIDQFCAPINEALSLLP T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2pljA 263 :ETVHVLAEPGRFICAPAVTSVASVMGQAEREG T0547 346 :ENKLILKKQNPKLIDE 2pljA 295 :QIWYYLDDGIYGSFSG T0547 362 :LYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVD 2pljA 312 :MFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAEN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFK T0547 429 :LLAIQDE 2pljA 383 :QTIALNE Number of specific fragments extracted= 17 number of extra gaps= 1 total=15440 Will force an alignment to be made, even if fragment is small Number of alignments=715 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)K196 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)V436 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)Q437 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 28 :KPAIIDIVKELRDD 2pljA 17 :VLSAEEIHLIEASV T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 2pljA 32 :QFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2pljA 83 :SFDLATTGEVELVASEGVPADLTIHTHPIKRD T0547 140 :INIGF 2pljA 115 :ADIRD T0547 146 :AAEMGHNI 2pljA 120 :ALAYGCNV T0547 155 :LTIEGLNELEAIIDIAKE 2pljA 128 :FVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 197 :S 2pljA 165 :K T0547 203 :KFGLTSTELIEAVNLLKENKL 2pljA 166 :KFGCSPEQALVIIETAKEWNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVE 2pljA 187 :RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVN T0547 283 :KNEKSR 2pljA 240 :YTQQVM T0547 291 :TLREYANDVVFILKNIA 2pljA 246 :PIDQFCAPINEALSLLP T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2pljA 263 :ETVHVLAEPGRFICAPAVTSVASVMGQAEREG T0547 346 :ENKLILKKQNPKLIDE 2pljA 295 :QIWYYLDDGIYGSFSG T0547 362 :LYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVD 2pljA 312 :MFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAEN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFN T0547 426 :PADLLAIQDE 2pljA 380 :KRAQTIALNE Number of specific fragments extracted= 18 number of extra gaps= 1 total=15458 Will force an alignment to be made, even if fragment is small Number of alignments=716 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2pljA 26 :IEASVEQFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRD T0547 140 :INIGF 2pljA 115 :ADIRD T0547 146 :AAEMGHNI 2pljA 120 :ALAYGCNV T0547 155 :LTIEGLNELE 2pljA 128 :FVVDNLNELE T0547 169 :IAKE 2pljA 138 :KFKA T0547 174 :FKPKPNIGLRVR 2pljA 142 :YRDDVELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENKL 2pljA 165 :KKFGCSPEQALVIIETAKEWNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY 2pljA 187 :RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNY T0547 283 :KNE 2pljA 241 :TQQ T0547 287 :SR 2pljA 244 :VM T0547 291 :TLREYANDVVFIL 2pljA 246 :PIDQFCAPINEAL T0547 308 :E 2pljA 259 :S T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2pljA 260 :LLPETVHVLAEPGRFICAPAVTSVASVMGQAEREG T0547 346 :ENKLILKKQNPKLIDELY 2pljA 295 :QIWYYLDDGIYGSFSGLM T0547 366 :YKSIKPS 2pljA 313 :FDDARYP T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 2pljA 323 :IKQGGELIPSVLSGPTCDSVDVIAEN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFK Number of specific fragments extracted= 19 number of extra gaps= 0 total=15477 Will force an alignment to be made, even if fragment is small Number of alignments=717 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)K196 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 T0547 28 :KPAIIDIVKELRDD 2pljA 17 :VLSAEEIHLIEASV T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 2pljA 32 :QFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2pljA 83 :SFDLATTGEVELVASEGVPADLTIHTHPIKRD T0547 140 :INIGF 2pljA 115 :ADIRD T0547 146 :AAEMGHNI 2pljA 120 :ALAYGCNV T0547 155 :LTIEGLNELEAIIDIAKE 2pljA 128 :FVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 197 :S 2pljA 165 :K T0547 203 :KFGLTSTELIEAVNLLKENKL 2pljA 166 :KFGCSPEQALVIIETAKEWNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVE 2pljA 187 :RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVN T0547 283 :KNEKSR 2pljA 240 :YTQQVM T0547 291 :TLREYANDVVFIL 2pljA 246 :PIDQFCAPINEAL T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2pljA 259 :SLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREG T0547 346 :ENKLILKKQNPKLIDE 2pljA 295 :QIWYYLDDGIYGSFSG T0547 362 :LYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVD 2pljA 312 :MFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAEN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFK Number of specific fragments extracted= 17 number of extra gaps= 0 total=15494 Will force an alignment to be made, even if fragment is small Number of alignments=718 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)W9 because first residue in template chain is (2pljA)H3 Warning: unaligning (T0547)K17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)P16 Warning: unaligning (T0547)C22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)L441 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)V442 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 10 :GNENFII 2pljA 4 :SQSIFDI T0547 23 :INYEKKPAIID 2pljA 17 :VLSAEEIHLIE T0547 37 :E 2pljA 28 :A T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNF 2pljA 29 :SVEQFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2pljA 83 :SFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINIGF 2pljA 109 :HPIKRDADIRDAL T0547 148 :EMGHNIT 2pljA 122 :AYGCNVF T0547 156 :TIEGLNELEAIIDIAKE 2pljA 129 :VVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LEQFT 2pljA 186 :IRIKG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKN 2pljA 191 :LSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVM T0547 291 :TLREYANDVVFILKNIA 2pljA 246 :PIDQFCAPINEALSLLP T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2pljA 263 :ETVHVLAEPGRFICAPAVTSVASVMGQAEREGQI T0547 348 :KLILKK 2pljA 297 :WYYLDD T0547 354 :QNPKLIDEL 2pljA 304 :IYGSFSGLM T0547 363 :YDLYKSIKPSNALE 2pljA 314 :DDARYPLTTIKQGG T0547 377 :YLHDSIDHLESILTLFDLGYV 2pljA 330 :IPSVLSGPTCDSVDVIAENIL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 20 number of extra gaps= 1 total=15514 Will force an alignment to be made, even if fragment is small Number of alignments=719 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (2pljA)H3 Warning: unaligning (T0547)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)E438 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 22 :CINY 2pljA 4 :SQSI T0547 29 :PAIIDIVKELRDD 2pljA 20 :AEEIHLIEASVEQ T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2pljA 33 :FGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2pljA 83 :SFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINIGF 2pljA 109 :HPIKRDADIRDAL T0547 148 :EMGHNIT 2pljA 122 :AYGCNVF T0547 156 :TIEGLNELEAIIDIAKE 2pljA 129 :VVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LEQFT 2pljA 186 :IRIKG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQ 2pljA 191 :LSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQ T0547 284 :NEK 2pljA 243 :QVM T0547 291 :TLREYANDVV 2pljA 246 :PIDQFCAPIN T0547 305 :NIAEQKKD 2pljA 256 :EALSLLPE T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2pljA 264 :TVHVLAEPGRFICAPAVTSVASVMGQAEREGQI T0547 348 :KLILKK 2pljA 297 :WYYLDD T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2pljA 304 :IYGSFSGLMFDDARYPLTTIKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2pljA 330 :IPSVLSGPTCDSVDVIAENIL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 20 number of extra gaps= 1 total=15534 Will force an alignment to be made, even if fragment is small Number of alignments=720 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (2pljA)H3 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)E438 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 22 :CINY 2pljA 4 :SQSI T0547 29 :PA 2pljA 23 :IH T0547 31 :IIDIVKE 2pljA 26 :IEASVEQ T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2pljA 33 :FGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINIGF 2pljA 109 :HPIKRDADIRDAL T0547 148 :EMGHNIT 2pljA 122 :AYGCNVF T0547 156 :TIEGLNELEAIIDIAKE 2pljA 129 :VVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LEQFT 2pljA 186 :IRIKG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQF 2pljA 191 :LSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQ T0547 285 :EK 2pljA 244 :VM T0547 291 :TLREYANDVVFILKNI 2pljA 246 :PIDQFCAPINEALSLL T0547 311 :KD 2pljA 262 :PE T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2pljA 264 :TVHVLAEPGRFICAPAVTSVASVMGQAEREGQI T0547 348 :KLILKK 2pljA 297 :WYYLDD T0547 354 :QNPKLIDELYDLYK 2pljA 304 :IYGSFSGLMFDDAR T0547 368 :SIKPSNALEYLHDSIDHLESILTLFDLGY 2pljA 321 :TTIKQGGELIPSVLSGPTCDSVDVIAENI T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2pljA 350 :LLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 21 number of extra gaps= 1 total=15555 Will force an alignment to be made, even if fragment is small Number of alignments=721 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)G19 because first residue in template chain is (2pljA)H3 Warning: unaligning (T0547)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)E438 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 20 :KVCINYE 2pljA 4 :SQSIFDI T0547 29 :PAIIDIVKEL 2pljA 20 :AEEIHLIEAS T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNF 2pljA 30 :VEQFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2pljA 83 :SFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINIGF 2pljA 109 :HPIKRDADIRDAL T0547 148 :EMGHNIT 2pljA 122 :AYGCNVF T0547 156 :TIEGLNELEAIIDIAKE 2pljA 129 :VVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LEQFT 2pljA 186 :IRIKG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQ 2pljA 191 :LSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQ T0547 284 :NEK 2pljA 243 :QVM T0547 291 :TLREYANDVVFILKNI 2pljA 246 :PIDQFCAPINEALSLL T0547 311 :KD 2pljA 262 :PE T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2pljA 264 :TVHVLAEPGRFICAPAVTSVASVMGQAEREGQI T0547 348 :KLILKK 2pljA 297 :WYYLDD T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2pljA 304 :IYGSFSGLMFDDARYPLTTIKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2pljA 330 :IPSVLSGPTCDSVDVIAENIL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 20 number of extra gaps= 1 total=15575 Will force an alignment to be made, even if fragment is small Number of alignments=722 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)G487 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 29 :P 2pljA 24 :H T0547 31 :IIDIVKE 2pljA 26 :IEASVEQ T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2pljA 33 :FGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINIGF 2pljA 109 :HPIKRDADIRDAL T0547 148 :EMGHNIT 2pljA 122 :AYGCNVF T0547 156 :TIEGLNELE 2pljA 129 :VVDNLNELE T0547 169 :IAKERFKP 2pljA 138 :KFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LEQFT 2pljA 186 :IRIKG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKN 2pljA 191 :LSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVM T0547 291 :TLREYANDVVFI 2pljA 246 :PIDQFCAPINEA T0547 307 :AEQKKD 2pljA 258 :LSLLPE T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2pljA 264 :TVHVLAEPGRFICAPAVTSVASVMGQAEREGQI T0547 348 :KLILKK 2pljA 297 :WYYLDD T0547 354 :QNPKLIDELYDLYKSI 2pljA 304 :IYGSFSGLMFDDARYP T0547 370 :KPSNALEYLHDSIDHLESILTLFDLGY 2pljA 323 :IKQGGELIPSVLSGPTCDSVDVIAENI T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLA 2pljA 350 :LLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQ T0547 480 :DITCDS 2pljA 384 :TIALNE Number of specific fragments extracted= 21 number of extra gaps= 1 total=15596 Will force an alignment to be made, even if fragment is small Number of alignments=723 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)K20 because first residue in template chain is (2pljA)H3 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)E438 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 21 :VCINY 2pljA 4 :SQSIF T0547 27 :K 2pljA 9 :D T0547 29 :PAIIDIVKELRDD 2pljA 20 :AEEIHLIEASVEQ T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2pljA 33 :FGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2pljA 83 :SFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINIGF 2pljA 109 :HPIKRDADIRDAL T0547 148 :EMGHNIT 2pljA 122 :AYGCNVF T0547 156 :TIEGLNELEAIIDIAKE 2pljA 129 :VVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LEQFT 2pljA 186 :IRIKG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQF 2pljA 191 :LSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQ T0547 285 :EK 2pljA 244 :VM T0547 291 :TLREYANDVVF 2pljA 246 :PIDQFCAPINE T0547 306 :IAEQKKD 2pljA 257 :ALSLLPE T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2pljA 264 :TVHVLAEPGRFICAPAVTSVASVMGQAEREGQI T0547 348 :KLILKK 2pljA 297 :WYYLDD T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2pljA 304 :IYGSFSGLMFDDARYPLTTIKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2pljA 330 :IPSVLSGPTCDSVDVIAENIL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 21 number of extra gaps= 1 total=15617 Will force an alignment to be made, even if fragment is small Number of alignments=724 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)K17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)P16 Warning: unaligning (T0547)C22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 T0547 13 :NFII 2pljA 7 :IFDI T0547 23 :INYEKKPAIID 2pljA 17 :VLSAEEIHLIE T0547 34 :IVKE 2pljA 29 :SVEQ T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2pljA 33 :FGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2pljA 83 :SFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINIGF 2pljA 109 :HPIKRDADIRDAL T0547 148 :EMGHNIT 2pljA 122 :AYGCNVF T0547 156 :TIEGLNELEAIIDIAKE 2pljA 129 :VVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LEQFT 2pljA 186 :IRIKG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKN 2pljA 191 :LSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVM T0547 291 :TLREYANDVVFILKNIA 2pljA 246 :PIDQFCAPINEALSLLP T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2pljA 263 :ETVHVLAEPGRFICAPAVTSVASVMGQAEREGQI T0547 348 :KLILKK 2pljA 297 :WYYLDD T0547 354 :QNPKLIDEL 2pljA 304 :IYGSFSGLM T0547 363 :YDLYKSIKPSNALE 2pljA 314 :DDARYPLTTIKQGG T0547 377 :YLHDSIDHLESILTLFDLGYV 2pljA 330 :IPSVLSGPTCDSVDVIAENIL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIAL Number of specific fragments extracted= 20 number of extra gaps= 0 total=15637 Will force an alignment to be made, even if fragment is small Number of alignments=725 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)E438 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 29 :PAIIDIVKELRDD 2pljA 20 :AEEIHLIEASVEQ T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2pljA 33 :FGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2pljA 83 :SFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINIGF 2pljA 109 :HPIKRDADIRDAL T0547 148 :EMGHNIT 2pljA 122 :AYGCNVF T0547 156 :TIEGLNELEAIIDIAKE 2pljA 129 :VVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LEQFT 2pljA 186 :IRIKG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQ 2pljA 191 :LSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQ T0547 284 :NEK 2pljA 243 :QVM T0547 291 :TLREYANDVV 2pljA 246 :PIDQFCAPIN T0547 305 :NIAEQKKD 2pljA 256 :EALSLLPE T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2pljA 264 :TVHVLAEPGRFICAPAVTSVASVMGQAEREGQI T0547 348 :KLILKK 2pljA 297 :WYYLDD T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2pljA 304 :IYGSFSGLMFDDARYPLTTIKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2pljA 330 :IPSVLSGPTCDSVDVIAENIL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 19 number of extra gaps= 1 total=15656 Will force an alignment to be made, even if fragment is small Number of alignments=726 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)G19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)E438 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 20 :KVCI 2pljA 17 :VLSA T0547 27 :KKPA 2pljA 21 :EEIH T0547 31 :IIDIVKE 2pljA 26 :IEASVEQ T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2pljA 33 :FGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINIGF 2pljA 109 :HPIKRDADIRDAL T0547 148 :EMGHNIT 2pljA 122 :AYGCNVF T0547 156 :TIEGLNELEAIIDIAKE 2pljA 129 :VVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LEQFT 2pljA 186 :IRIKG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQF 2pljA 191 :LSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQ T0547 285 :EK 2pljA 244 :VM T0547 291 :TLREYANDVVFILKNI 2pljA 246 :PIDQFCAPINEALSLL T0547 311 :KD 2pljA 262 :PE T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2pljA 264 :TVHVLAEPGRFICAPAVTSVASVMGQAEREGQI T0547 348 :KLILKK 2pljA 297 :WYYLDD T0547 354 :QNPKLIDELYDLYK 2pljA 304 :IYGSFSGLMFDDAR T0547 368 :SIKPSNALEYLHDSIDHLESILTLFDLGY 2pljA 321 :TTIKQGGELIPSVLSGPTCDSVDVIAENI T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2pljA 350 :LLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 21 number of extra gaps= 1 total=15677 Will force an alignment to be made, even if fragment is small Number of alignments=727 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)E438 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 29 :PAIIDIVKEL 2pljA 20 :AEEIHLIEAS T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNF 2pljA 30 :VEQFGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2pljA 83 :SFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINIGF 2pljA 109 :HPIKRDADIRDAL T0547 148 :EMGHNIT 2pljA 122 :AYGCNVF T0547 156 :TIEGLNELEAIIDIAKE 2pljA 129 :VVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LEQFT 2pljA 186 :IRIKG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQ 2pljA 191 :LSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQ T0547 284 :NEK 2pljA 243 :QVM T0547 291 :TLREYANDVVFILKNI 2pljA 246 :PIDQFCAPINEALSLL T0547 311 :KD 2pljA 262 :PE T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2pljA 264 :TVHVLAEPGRFICAPAVTSVASVMGQAEREGQI T0547 348 :KLILKK 2pljA 297 :WYYLDD T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2pljA 304 :IYGSFSGLMFDDARYPLTTIKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2pljA 330 :IPSVLSGPTCDSVDVIAENIL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 19 number of extra gaps= 1 total=15696 Will force an alignment to be made, even if fragment is small Number of alignments=728 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)G487 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 31 :IIDIVKE 2pljA 26 :IEASVEQ T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2pljA 33 :FGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINIGF 2pljA 109 :HPIKRDADIRDAL T0547 148 :EMGHNIT 2pljA 122 :AYGCNVF T0547 156 :TIEGLNELE 2pljA 129 :VVDNLNELE T0547 169 :IAKERFKP 2pljA 138 :KFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LEQFT 2pljA 186 :IRIKG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKN 2pljA 191 :LSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVM T0547 291 :TLREYANDVVFI 2pljA 246 :PIDQFCAPINEA T0547 307 :AEQKKD 2pljA 258 :LSLLPE T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2pljA 264 :TVHVLAEPGRFICAPAVTSVASVMGQAEREGQI T0547 348 :KLILKK 2pljA 297 :WYYLDD T0547 354 :QNPKLIDELYDLYKSI 2pljA 304 :IYGSFSGLMFDDARYP T0547 370 :KPSNALEYLHDSIDHLESILTLFDLGY 2pljA 323 :IKQGGELIPSVLSGPTCDSVDVIAENI T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLA 2pljA 350 :LLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQ T0547 480 :DITCDS 2pljA 384 :TIALNE Number of specific fragments extracted= 20 number of extra gaps= 1 total=15716 Will force an alignment to be made, even if fragment is small Number of alignments=729 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)E438 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 29 :PAIIDIVKELRDD 2pljA 20 :AEEIHLIEASVEQ T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2pljA 33 :FGAPLLLLDCDVIRQQYRALKNAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2pljA 57 :PNVTLHYALKPLPHPVVVRTLLAEGA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 2pljA 83 :SFDLATTGEVELVASEGVPADLTIH T0547 132 :NGFKDRELINIGF 2pljA 109 :HPIKRDADIRDAL T0547 148 :EMGHNIT 2pljA 122 :AYGCNVF T0547 156 :TIEGLNELEAIIDIAKE 2pljA 129 :VVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 224 :LEQFT 2pljA 186 :IRIKG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQF 2pljA 191 :LSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQ T0547 285 :EK 2pljA 244 :VM T0547 291 :TLREYANDVVF 2pljA 246 :PIDQFCAPINE T0547 306 :IAEQKKD 2pljA 257 :ALSLLPE T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2pljA 264 :TVHVLAEPGRFICAPAVTSVASVMGQAEREGQI T0547 348 :KLILKK 2pljA 297 :WYYLDD T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2pljA 304 :IYGSFSGLMFDDARYPLTTIKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2pljA 330 :IPSVLSGPTCDSVDVIAENIL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2pljA 351 :LPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 19 number of extra gaps= 1 total=15735 Will force an alignment to be made, even if fragment is small Number of alignments=730 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)Y440 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 29 :PAIIDIVK 2pljA 18 :LSAEEIHL T0547 37 :ELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2pljA 27 :EASVEQFGAPLLLLDCDVIRQQYRALKNALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2pljA 58 :NVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCN T0547 154 :TLTIEGLNELEAIIDIAKE 2pljA 127 :VFVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKS 2pljA 186 :IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPID T0547 294 :EYANDVVFIL 2pljA 249 :QFCAPINEAL T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDR 2pljA 259 :SLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAENILLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 2pljA 354 :LNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 11 number of extra gaps= 1 total=15746 Will force an alignment to be made, even if fragment is small Number of alignments=731 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)I23 because first residue in template chain is (2pljA)H3 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)Y440 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 24 :NYEK 2pljA 4 :SQSI T0547 29 :PAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2pljA 19 :SAEEIHLIEASVEQFGAPLLLLDCDVIRQQYRALKNALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2pljA 58 :NVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCN T0547 154 :TLTIEGLNELEAIIDIAKE 2pljA 127 :VFVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNY 2pljA 186 :IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFC T0547 302 :ILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDR 2pljA 252 :APINEALSLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAENILLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 2pljA 354 :LNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 10 number of extra gaps= 1 total=15756 Will force an alignment to be made, even if fragment is small Number of alignments=732 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)N24 because first residue in template chain is (2pljA)H3 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)Y440 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 25 :YEKK 2pljA 4 :SQSI T0547 29 :PAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2pljA 19 :SAEEIHLIEASVEQFGAPLLLLDCDVIRQQYRALKNALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2pljA 58 :NVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCN T0547 154 :TLTIEGLNELEAIIDIAKE 2pljA 127 :VFVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSR 2pljA 186 :IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQ T0547 295 :YANDVVFIL 2pljA 250 :FCAPINEAL T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDR 2pljA 259 :SLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAENILLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 2pljA 354 :LNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 11 number of extra gaps= 1 total=15767 Will force an alignment to be made, even if fragment is small Number of alignments=733 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)Y440 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 29 :PAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2pljA 19 :SAEEIHLIEASVEQFGAPLLLLDCDVIRQQYRALKNALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2pljA 58 :NVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCN T0547 154 :TLTIEGLNELEAIIDIAKE 2pljA 127 :VFVVDNLNELEKFKAYRDD T0547 174 :FKPKPNIG 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKS 2pljA 186 :IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPID T0547 299 :VVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDR 2pljA 249 :QFCAPINEALSLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAENILLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 2pljA 354 :LNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 9 number of extra gaps= 1 total=15776 Will force an alignment to be made, even if fragment is small Number of alignments=734 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)Q554 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 29 :PAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2pljA 19 :SAEEIHLIEASVEQFGAPLLLLDCDVIRQQYRALKNALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2pljA 58 :NVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCN T0547 154 :TLTIEGLNELEA 2pljA 127 :VFVVDNLNELEK T0547 170 :AKE 2pljA 139 :FKA T0547 174 :FKPKPNIGLRVR 2pljA 142 :YRDDVELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEK 2pljA 186 :IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPI T0547 293 :REYANDVVFIL 2pljA 248 :DQFCAPINEAL T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELY 2pljA 259 :SLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMF T0547 367 :KSIKPS 2pljA 314 :DDARYP T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2pljA 323 :IKQGGELIPSVLSGPTCDSVDVIAENILLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLA 2pljA 354 :LNNGDLVIGRTMGAYTSATATDFNFFKRA T0547 475 :SASIWD 2pljA 383 :QTIALN T0547 553 :A 2pljA 389 :E Number of specific fragments extracted= 15 number of extra gaps= 1 total=15791 Will force an alignment to be made, even if fragment is small Number of alignments=735 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)T534 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 29 :PAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2pljA 19 :SAEEIHLIEASVEQFGAPLLLLDCDVIRQQYRALKNALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2pljA 58 :NVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCN T0547 154 :TLTIEGLNELEAIIDIAKE 2pljA 127 :VFVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKS 2pljA 186 :IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPID T0547 299 :VVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDR 2pljA 249 :QFCAPINEALSLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAENILLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAI 2pljA 354 :LNNGDLVIGRTMGAYTSATATDFNFFKRAQ T0547 476 :ASIWDI 2pljA 384 :TIALNE Number of specific fragments extracted= 10 number of extra gaps= 1 total=15801 Will force an alignment to be made, even if fragment is small Number of alignments=736 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 T0547 30 :A 2pljA 24 :H T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2pljA 25 :LIEASVEQFGAPLLLLDCDVIRQQYRALKNALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2pljA 58 :NVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCN T0547 154 :TLTIEGLNELEAIIDIAKE 2pljA 127 :VFVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKS 2pljA 186 :IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPID T0547 294 :EYANDVVFIL 2pljA 249 :QFCAPINEAL T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDR 2pljA 259 :SLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAENILLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2pljA 354 :LNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALN Number of specific fragments extracted= 11 number of extra gaps= 0 total=15812 Will force an alignment to be made, even if fragment is small Number of alignments=737 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)E26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)Y440 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 27 :KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2pljA 17 :VLSAEEIHLIEASVEQFGAPLLLLDCDVIRQQYRALKNALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2pljA 58 :NVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCN T0547 154 :TLTIEGLNELEAIIDIAKE 2pljA 127 :VFVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNY 2pljA 186 :IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFC T0547 302 :ILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDR 2pljA 252 :APINEALSLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAENILLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 2pljA 354 :LNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 9 number of extra gaps= 1 total=15821 Will force an alignment to be made, even if fragment is small Number of alignments=738 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)E26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)Y440 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 27 :KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2pljA 17 :VLSAEEIHLIEASVEQFGAPLLLLDCDVIRQQYRALKNALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2pljA 58 :NVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCN T0547 154 :TLTIEGLNELEAIIDIAKE 2pljA 127 :VFVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSR 2pljA 186 :IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQ T0547 295 :YANDVVFIL 2pljA 250 :FCAPINEAL T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDR 2pljA 259 :SLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAENILLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 2pljA 354 :LNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 10 number of extra gaps= 1 total=15831 Will force an alignment to be made, even if fragment is small Number of alignments=739 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)E26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE in next template residue (2pljA)V391 Warning: unaligning (T0547)Y440 because of BadResidue code BAD_PEPTIDE at template residue (2pljA)V391 T0547 27 :KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2pljA 17 :VLSAEEIHLIEASVEQFGAPLLLLDCDVIRQQYRALKNALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2pljA 58 :NVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCN T0547 154 :TLTIEGLNELEAIIDIAKE 2pljA 127 :VFVVDNLNELEKFKAYRDD T0547 174 :FKPKPNIG 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKS 2pljA 186 :IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPID T0547 299 :VVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDR 2pljA 249 :QFCAPINEALSLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAENILLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 2pljA 354 :LNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE Number of specific fragments extracted= 9 number of extra gaps= 1 total=15840 Will force an alignment to be made, even if fragment is small Number of alignments=740 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)E26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 T0547 27 :KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2pljA 17 :VLSAEEIHLIEASVEQFGAPLLLLDCDVIRQQYRALKNALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2pljA 58 :NVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCN T0547 154 :TLTIEGLNELEA 2pljA 127 :VFVVDNLNELEK T0547 170 :AKE 2pljA 139 :FKA T0547 174 :FKPKPNIGLRVR 2pljA 142 :YRDDVELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEK 2pljA 186 :IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPI T0547 293 :REYANDVVFIL 2pljA 248 :DQFCAPINEAL T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELY 2pljA 259 :SLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMF T0547 367 :KSIKPS 2pljA 314 :DDARYP T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 2pljA 323 :IKQGGELIPSVLSGPTCDSVDVIAENILLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLA 2pljA 354 :LNNGDLVIGRTMGAYTSATATDFNFFKRA Number of specific fragments extracted= 13 number of extra gaps= 0 total=15853 Will force an alignment to be made, even if fragment is small Number of alignments=741 # 2pljA read from all-align.a2m # found chain 2pljA in template set Warning: unaligning (T0547)E26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)P16 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2pljA)S164 Warning: unaligning (T0547)N201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2pljA)S164 T0547 27 :KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2pljA 17 :VLSAEEIHLIEASVEQFGAPLLLLDCDVIRQQYRALKNALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2pljA 58 :NVTLHYALKPLPHPVVVRTLLAEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2pljA 82 :ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCN T0547 154 :TLTIEGLNELEAIIDIAKE 2pljA 127 :VFVVDNLNELEKFKAYRDD T0547 178 :PNIGLRVR 2pljA 146 :VELLVRLS T0547 202 :SKFGLTSTELIEAVNLLKENK 2pljA 165 :KKFGCSPEQALVIIETAKEWN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKS 2pljA 186 :IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPID T0547 299 :VVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDR 2pljA 249 :QFCAPINEALSLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAENILLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAI 2pljA 354 :LNNGDLVIGRTMGAYTSATATDFNFFKRAQ T0547 476 :A 2pljA 384 :T Number of specific fragments extracted= 10 number of extra gaps= 0 total=15863 Will force an alignment to be made, even if fragment is small Number of alignments=742 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)D33 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)L468 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)G544 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)E546 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)I567 because last residue in template chain is (2qghA)L402 T0547 34 :IVKELR 2qghA 4 :YEELFQ T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFN 2qghA 10 :THKTPFYLYDFDKIKQAFLNYKEAFK T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 36 :GRKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGHNI 2qghA 102 :KLNILF T0547 155 :LTIEGLNELEAIIDIAKER 2qghA 108 :LNVESFMELKTIETIAQSL T0547 175 :KPKPNIGLRVRLH 2qghA 127 :GIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 179 :PVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEY 2qghA 216 :DLRFFDVGGGIGVSY T0547 287 :SRNYTLREYANDVVFILK 2qghA 233 :EETIKLYDYAQGILNALQ T0547 312 :DLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 251 :GLDLTIICEPGRSIVAESGELITQVLYEK T0547 438 :ER 2qghA 284 :KR T0547 440 :YLVNFSLFQSMPDFW 2qghA 287 :VIVDAGMNDFLRPSL T0547 456 :LEQNFPIMPLDR 2qghA 302 :YHAKHAIRVITP T0547 473 :TRSASIWDITCDSDGEI 2qghA 319 :ISPCDVVGPVCESSDTF T0547 494 :DKPLFLHDVDVEK 2qghA 336 :LKDAHLPELEPGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2qghA 349 :KIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 547 :VEGIIEAQSILDTLEDLDYD 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 20 number of extra gaps= 0 total=15883 Will force an alignment to be made, even if fragment is small Number of alignments=743 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)L468 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)G544 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)E546 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFN 2qghA 9 :QTHKTPFYLYDFDKIKQAFLNYKEAFK T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 36 :GRKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGHNI 2qghA 102 :KLNILF T0547 155 :LTIEGLNELEAIIDIAKER 2qghA 108 :LNVESFMELKTIETIAQSL T0547 175 :KPKPNIGLRVRLH 2qghA 127 :GIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 179 :PVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEY 2qghA 216 :DLRFFDVGGGIGVSY T0547 287 :SRNYTLREYANDVVFILK 2qghA 233 :EETIKLYDYAQGILNALQ T0547 312 :DLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 251 :GLDLTIICEPGRSIVAESGELITQVLYEK T0547 438 :ER 2qghA 284 :KR T0547 440 :YLVNFSLFQSMPDFW 2qghA 287 :VIVDAGMNDFLRPSL T0547 456 :LEQNFPIMPLDR 2qghA 302 :YHAKHAIRVITP T0547 473 :TRSASIWDITCDSDGEI 2qghA 319 :ISPCDVVGPVCESSDTF T0547 494 :DKPLFLHDVDVEK 2qghA 336 :LKDAHLPELEPGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2qghA 349 :KIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 547 :VEGIIEAQSILDTLEDLD 2qghA 382 :IRVIRKREALEDLWRLEE Number of specific fragments extracted= 19 number of extra gaps= 0 total=15902 Will force an alignment to be made, even if fragment is small Number of alignments=744 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)D33 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)V436 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)E471 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)G544 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)E546 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 34 :IVKELR 2qghA 4 :YEELFQ T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFNKA 2qghA 10 :THKTPFYLYDFDKIKQAFLNYKEAFKGR T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2qghA 38 :KSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNG 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSG T0547 134 :FKDRELINIGF 2qghA 91 :GKSAFEIEQAL T0547 148 :EMGHNI 2qghA 102 :KLNILF T0547 155 :LTIEGLNELEAIIDIAKER 2qghA 108 :LNVESFMELKTIETIAQSL T0547 175 :KPKPNIGLRVRLH 2qghA 127 :GIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 179 :PVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQ 2qghA 216 :DLRFFDVGGGIGVSYEN T0547 287 :SRNYTLREYANDVVFILKNI 2qghA 233 :EETIKLYDYAQGILNALQGL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELF 2qghA 253 :DLTIICEPGRSIVAESGELITQVLYEK T0547 437 :QERYLVNFSLF 2qghA 284 :KRFVIVDAGMN T0547 449 :SMPDFWGLEQNFPIMPLD 2qghA 295 :DFLRPSLYHAKHAIRVIT T0547 472 :P 2qghA 319 :I T0547 475 :SASIWDITCDSDGEI 2qghA 321 :PCDVVGPVCESSDTF T0547 494 :DKPLFLHDVDVEK 2qghA 336 :LKDAHLPELEPGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2qghA 349 :KIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 547 :VEGIIEAQSILDTLEDLDYD 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 20 number of extra gaps= 0 total=15922 Will force an alignment to be made, even if fragment is small Number of alignments=745 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V436 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)E471 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)G544 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)E546 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFNKA 2qghA 9 :QTHKTPFYLYDFDKIKQAFLNYKEAFKGR T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2qghA 38 :KSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNG 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSG T0547 134 :FKDRELINIGF 2qghA 91 :GKSAFEIEQAL T0547 148 :EMGHNI 2qghA 102 :KLNILF T0547 155 :LTIEGLNELEAIIDIAKER 2qghA 108 :LNVESFMELKTIETIAQSL T0547 175 :KPKPNIGLRVRLH 2qghA 127 :GIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 179 :PVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQ 2qghA 216 :DLRFFDVGGGIGVSYEN T0547 287 :SRNYTLREYANDVVFILKNI 2qghA 233 :EETIKLYDYAQGILNALQGL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELF 2qghA 253 :DLTIICEPGRSIVAESGELITQVLYEK T0547 437 :QERYLVNFSLF 2qghA 284 :KRFVIVDAGMN T0547 449 :SMPDFWGLEQNFPIMPLD 2qghA 295 :DFLRPSLYHAKHAIRVIT T0547 472 :P 2qghA 319 :I T0547 475 :SASIWDITCDSDGEI 2qghA 321 :PCDVVGPVCESSDTF T0547 494 :DKPLFLHDVDVEK 2qghA 336 :LKDAHLPELEPGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2qghA 349 :KIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 547 :VEGIIEAQSILDTLEDL 2qghA 382 :IRVIRKREALEDLWRLE Number of specific fragments extracted= 19 number of extra gaps= 0 total=15941 Will force an alignment to be made, even if fragment is small Number of alignments=746 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V436 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)G544 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)E546 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 37 :ELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2qghA 5 :EELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGR T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2qghA 38 :KSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSA T0547 143 :GFIAAEMGHNI 2qghA 95 :FEIEQALKLNI T0547 154 :TLTIEGLNELEAIIDIAKER 2qghA 107 :FLNVESFMELKTIETIAQSL T0547 175 :KPKPNIGLRVRLH 2qghA 127 :GIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 179 :PVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQ 2qghA 216 :DLRFFDVGGGIGVSYEN T0547 294 :EYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 233 :EETIKLYDYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 437 :QERYLVNFSLFQSMPDFWGLEQNFPIMP 2qghA 284 :KRFVIVDAGMNDFLRPSLYHAKHAIRVI T0547 473 :TRSASIWDITCDSDGEISYS 2qghA 319 :ISPCDVVGPVCESSDTFLKD T0547 497 :LF 2qghA 339 :AH T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2qghA 343 :ELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 547 :VEGIIEAQSILDTL 2qghA 382 :IRVIRKREALEDLW Number of specific fragments extracted= 15 number of extra gaps= 0 total=15956 Will force an alignment to be made, even if fragment is small Number of alignments=747 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V436 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2qghA 8 :FQTHKTPFYLYDFDKIKQAFLNYKEAFKGR T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2qghA 38 :KSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSA T0547 143 :GFIAAEMGHNI 2qghA 95 :FEIEQALKLNI T0547 154 :TLTIEGLNELEAIIDIAKER 2qghA 107 :FLNVESFMELKTIETIAQSL T0547 175 :KPKPNIGLRVRLH 2qghA 127 :GIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 179 :PVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQ 2qghA 216 :DLRFFDVGGGIGVSYEN T0547 294 :EYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 233 :EETIKLYDYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 437 :QERYLVNFSLFQSMPDFWGLEQNFPIMP 2qghA 284 :KRFVIVDAGMNDFLRPSLYHAKHAIRVI T0547 473 :TRSASIWDITCDSDGEISYS 2qghA 319 :ISPCDVVGPVCESSDTFLKD T0547 497 :LF 2qghA 339 :AH T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2qghA 343 :ELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE Number of specific fragments extracted= 14 number of extra gaps= 0 total=15970 Will force an alignment to be made, even if fragment is small Number of alignments=748 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)Q458 because last residue in template chain is (2qghA)L402 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 37 :RKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGVGKSA T0547 140 :INIGF 2qghA 95 :FEIEQ T0547 146 :AAEMGH 2qghA 100 :ALKLNI T0547 153 :ITLTIEGLNELEAIIDIAKE 2qghA 106 :LFLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLH 2qghA 126 :LGIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 179 :PVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEY 2qghA 216 :DLRFFDVGGGIGVSY T0547 283 :KNEKSR 2qghA 231 :ENEETI T0547 291 :TLREYANDVVFILKN 2qghA 237 :KLYDYAQGILNALQG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 252 :LDLTIICEPGRSIVAESGELITQVLYEK T0547 346 :ENKLILKKQNPKLIDE 2qghA 284 :KRFVIVDAGMNDFLRP T0547 362 :LYDLYKSIKPSNA 2qghA 301 :LYHAKHAIRVITP T0547 379 :HDSIDHLESILTLFDLGYVD 2qghA 319 :ISPCDVVGPVCESSDTFLKD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYNSRP T0547 429 :LLAIQD 2qghA 373 :LELALE T0547 438 :ERYLVNFSLFQSMPDFWGLE 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 19 number of extra gaps= 0 total=15989 Will force an alignment to be made, even if fragment is small Number of alignments=749 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)Q458 because last residue in template chain is (2qghA)L402 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 37 :RKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGVGKSA T0547 140 :INIGF 2qghA 95 :FEIEQ T0547 146 :AAEMGHNI 2qghA 100 :ALKLNILF T0547 155 :LTIEGLNELEAIIDIAKE 2qghA 108 :LNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLH 2qghA 126 :LGIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLL 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 178 :EPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEY 2qghA 216 :DLRFFDVGGGIGVSY T0547 282 :F 2qghA 231 :E T0547 284 :NEKSR 2qghA 232 :NEETI T0547 291 :TLREYANDVVF 2qghA 237 :KLYDYAQGILN T0547 306 :IAEQKKDL 2qghA 248 :ALQGLDLT T0547 317 :IFIESGRFVAANHAVLIAPVLELF 2qghA 256 :IICEPGRSIVAESGELITQVLYEK T0547 346 :ENKLILKKQNPKLIDE 2qghA 284 :KRFVIVDAGMNDFLRP T0547 362 :LYDLYKSIKPSNA 2qghA 301 :LYHAKHAIRVITP T0547 379 :HDSIDHLESILTLFDLGYVD 2qghA 319 :ISPCDVVGPVCESSDTFLKD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYN T0547 426 :PADLLAIQD 2qghA 370 :PKLLELALE T0547 438 :ERYLVNFSLFQSMPDFWGLE 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 21 number of extra gaps= 0 total=16010 Will force an alignment to be made, even if fragment is small Number of alignments=750 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)Q458 because last residue in template chain is (2qghA)L402 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 37 :RKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSA T0547 140 :INIGF 2qghA 95 :FEIEQ T0547 146 :AAEMGHNI 2qghA 100 :ALKLNILF T0547 155 :LTIEGLNELEAIIDIAKE 2qghA 108 :LNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLH 2qghA 126 :LGIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 179 :PVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEY 2qghA 216 :DLRFFDVGGGIGVSY T0547 283 :KNEKSR 2qghA 231 :ENEETI T0547 291 :TLREYANDVVFILKN 2qghA 237 :KLYDYAQGILNALQG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 252 :LDLTIICEPGRSIVAESGELITQVLYEK T0547 346 :ENKLILKKQNPKLIDE 2qghA 284 :KRFVIVDAGMNDFLRP T0547 362 :LYDLYKSIKPSNA 2qghA 301 :LYHAKHAIRVITP T0547 379 :HDSIDHLESILTLFDLGYVD 2qghA 319 :ISPCDVVGPVCESSDTFLKD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYNSRP T0547 429 :LLAIQD 2qghA 373 :LELALE T0547 438 :ERYLVNFSLFQSMPDFWGLE 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 19 number of extra gaps= 0 total=16029 Will force an alignment to be made, even if fragment is small Number of alignments=751 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)Q458 because last residue in template chain is (2qghA)L402 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 37 :RKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGVGKSA T0547 140 :INIGF 2qghA 95 :FEIEQ T0547 146 :AAEMGHNI 2qghA 100 :ALKLNILF T0547 155 :LTIEGLNELEAIIDIAKE 2qghA 108 :LNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLH 2qghA 126 :LGIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 179 :PVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEY 2qghA 216 :DLRFFDVGGGIGVSY T0547 283 :KNEKSR 2qghA 231 :ENEETI T0547 291 :TLREYANDVVFILK 2qghA 237 :KLYDYAQGILNALQ T0547 311 :KDL 2qghA 251 :GLD T0547 315 :PDIFIESGRFVAANHAVLIAPVLELF 2qghA 254 :LTIICEPGRSIVAESGELITQVLYEK T0547 346 :ENKLILKKQNPKLIDE 2qghA 284 :KRFVIVDAGMNDFLRP T0547 362 :LYDLYKSIKPSNA 2qghA 301 :LYHAKHAIRVITP T0547 379 :HDSIDHLESILTLFDLGYVD 2qghA 319 :ISPCDVVGPVCESSDTFLKD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYN T0547 426 :PADLLAIQD 2qghA 370 :PKLLELALE T0547 438 :ERYLVNFSLFQSMPDFWGLE 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 20 number of extra gaps= 0 total=16049 Will force an alignment to be made, even if fragment is small Number of alignments=752 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)Q458 because last residue in template chain is (2qghA)L402 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFK T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 36 :GRKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSA T0547 140 :INIGF 2qghA 95 :FEIEQ T0547 146 :AAEMGHNI 2qghA 100 :ALKLNILF T0547 155 :LTIEGLNELEAIIDIAKE 2qghA 108 :LNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLH 2qghA 126 :LGIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLL 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 178 :EPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYS 2qghA 216 :DLRFFDVGGGIGVSYE T0547 284 :NEKSR 2qghA 232 :NEETI T0547 291 :TLREYANDVVFIL 2qghA 237 :KLYDYAQGILNAL T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 250 :QGLDLTIICEPGRSIVAESGELITQVLYEK T0547 346 :ENKLILKKQNPKLIDE 2qghA 284 :KRFVIVDAGMNDFLRP T0547 362 :LYDLYKSIKPSNA 2qghA 301 :LYHAKHAIRVITP T0547 379 :HDSIDHLESILTLFDLGYVD 2qghA 319 :ISPCDVVGPVCESSDTFLKD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYNSRP T0547 429 :LLAIQD 2qghA 373 :LELALE T0547 438 :ERYLVNFSLFQSMPDFWGLE 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 19 number of extra gaps= 0 total=16068 Will force an alignment to be made, even if fragment is small Number of alignments=753 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)Q458 because last residue in template chain is (2qghA)L402 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAF T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 35 :KGRKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGVGKSA T0547 140 :INIGF 2qghA 95 :FEIEQ T0547 146 :AAEMGHNI 2qghA 100 :ALKLNILF T0547 155 :LTIEGLNELEAIIDIAKE 2qghA 108 :LNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLH 2qghA 126 :LGIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLL 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 178 :EPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEY 2qghA 216 :DLRFFDVGGGIGVSY T0547 283 :KNEKSR 2qghA 231 :ENEETI T0547 291 :TLREYANDVVFI 2qghA 237 :KLYDYAQGILNA T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 249 :LQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 346 :ENKLILKKQNPKLIDE 2qghA 284 :KRFVIVDAGMNDFLRP T0547 362 :LYDLYKSIKPSNA 2qghA 301 :LYHAKHAIRVITP T0547 379 :HDSIDHLESILTLFDLGYVD 2qghA 319 :ISPCDVVGPVCESSDTFLKD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYN T0547 426 :PADLLAIQD 2qghA 370 :PKLLELALE T0547 438 :ERYLVNFSLFQSMPDFWGLE 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 19 number of extra gaps= 0 total=16087 Will force an alignment to be made, even if fragment is small Number of alignments=754 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 37 :RKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGVGKSA T0547 140 :INIGF 2qghA 95 :FEIEQ T0547 146 :AAEMGH 2qghA 100 :ALKLNI T0547 153 :ITLTIEGLNELEAIIDIAKE 2qghA 106 :LFLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLH 2qghA 126 :LGIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 179 :PVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEY 2qghA 216 :DLRFFDVGGGIGVSY T0547 283 :KNEKSR 2qghA 231 :ENEETI T0547 291 :TLREYANDVVFILKN 2qghA 237 :KLYDYAQGILNALQG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 252 :LDLTIICEPGRSIVAESGELITQVLYEK T0547 346 :ENKLILKKQNPKLIDE 2qghA 284 :KRFVIVDAGMNDFLRP T0547 362 :LYDLYKSIKPSNA 2qghA 301 :LYHAKHAIRVITP T0547 379 :HDSIDHLESILTLFDLGYVD 2qghA 319 :ISPCDVVGPVCESSDTFLKD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYNSRP T0547 429 :LLAIQD 2qghA 373 :LELALE T0547 438 :ERYLVNFSLFQSMPDFWG 2qghA 382 :IRVIRKREALEDLWRLEE Number of specific fragments extracted= 19 number of extra gaps= 0 total=16106 Will force an alignment to be made, even if fragment is small Number of alignments=755 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 37 :RKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGVGKSA T0547 140 :INIGF 2qghA 95 :FEIEQ T0547 146 :AAEMGHNI 2qghA 100 :ALKLNILF T0547 155 :LTIEGLNELEAIIDIAKE 2qghA 108 :LNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLH 2qghA 126 :LGIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLL 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 178 :EPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEY 2qghA 216 :DLRFFDVGGGIGVSY T0547 282 :F 2qghA 231 :E T0547 284 :NEKSR 2qghA 232 :NEETI T0547 291 :TLREYANDVVF 2qghA 237 :KLYDYAQGILN T0547 306 :IAEQKKDL 2qghA 248 :ALQGLDLT T0547 317 :IFIESGRFVAANHAVLIAPVLELF 2qghA 256 :IICEPGRSIVAESGELITQVLYEK T0547 346 :ENKLILKKQNPKLIDE 2qghA 284 :KRFVIVDAGMNDFLRP T0547 362 :LYDLYKSIKPSNA 2qghA 301 :LYHAKHAIRVITP T0547 379 :HDSIDHLESILTLFDLGYVD 2qghA 319 :ISPCDVVGPVCESSDTFLKD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYN T0547 426 :PADLLAIQD 2qghA 370 :PKLLELALE T0547 438 :ERYLVNFSLFQSMPDFWGLE 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 21 number of extra gaps= 0 total=16127 Will force an alignment to be made, even if fragment is small Number of alignments=756 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 37 :RKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSA T0547 140 :INIGF 2qghA 95 :FEIEQ T0547 146 :AAEMGHNI 2qghA 100 :ALKLNILF T0547 155 :LTIEGLNELEAIIDIAKE 2qghA 108 :LNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLH 2qghA 126 :LGIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 179 :PVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEY 2qghA 216 :DLRFFDVGGGIGVSY T0547 283 :KNEKSR 2qghA 231 :ENEETI T0547 291 :TLREYANDVVFILKN 2qghA 237 :KLYDYAQGILNALQG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 252 :LDLTIICEPGRSIVAESGELITQVLYEK T0547 346 :ENKLILKKQNPKLIDE 2qghA 284 :KRFVIVDAGMNDFLRP T0547 362 :LYDLYKSIKPSNA 2qghA 301 :LYHAKHAIRVITP T0547 379 :HDSIDHLESILTLFDLGYVD 2qghA 319 :ISPCDVVGPVCESSDTFLKD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYNSRP T0547 429 :LLAIQD 2qghA 373 :LELALE T0547 438 :ERYLVNFSLFQSMPDFWGL 2qghA 382 :IRVIRKREALEDLWRLEEE Number of specific fragments extracted= 19 number of extra gaps= 0 total=16146 Will force an alignment to be made, even if fragment is small Number of alignments=757 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 37 :RKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGVGKSA T0547 140 :INIGF 2qghA 95 :FEIEQ T0547 146 :AAEMGHNI 2qghA 100 :ALKLNILF T0547 155 :LTIEGLNELEAIIDIAKE 2qghA 108 :LNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLH 2qghA 126 :LGIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLE 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLE T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 179 :PVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEY 2qghA 216 :DLRFFDVGGGIGVSY T0547 283 :KNEKSR 2qghA 231 :ENEETI T0547 291 :TLREYANDVVFILK 2qghA 237 :KLYDYAQGILNALQ T0547 311 :KDL 2qghA 251 :GLD T0547 315 :PDIFIESGRFVAANHAVLIAPVLELF 2qghA 254 :LTIICEPGRSIVAESGELITQVLYEK T0547 346 :ENKLILKKQNPKLIDE 2qghA 284 :KRFVIVDAGMNDFLRP T0547 362 :LYDLYKSIKPSNA 2qghA 301 :LYHAKHAIRVITP T0547 379 :HDSIDHLESILTLFDLGYVD 2qghA 319 :ISPCDVVGPVCESSDTFLKD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYN T0547 426 :PADLLAIQD 2qghA 370 :PKLLELALE T0547 438 :ERYLVNFSLFQSMPDFWGLE 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 20 number of extra gaps= 0 total=16166 Will force an alignment to be made, even if fragment is small Number of alignments=758 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFK T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 36 :GRKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSA T0547 140 :INIGF 2qghA 95 :FEIEQ T0547 146 :AAEMGHNI 2qghA 100 :ALKLNILF T0547 155 :LTIEGLNELEAIIDIAKE 2qghA 108 :LNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLH 2qghA 126 :LGIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLL 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 178 :EPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYS 2qghA 216 :DLRFFDVGGGIGVSYE T0547 284 :NEKSR 2qghA 232 :NEETI T0547 291 :TLREYANDVVFIL 2qghA 237 :KLYDYAQGILNAL T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 250 :QGLDLTIICEPGRSIVAESGELITQVLYEK T0547 346 :ENKLILKKQNPKLIDE 2qghA 284 :KRFVIVDAGMNDFLRP T0547 362 :LYDLYKSIKPSNA 2qghA 301 :LYHAKHAIRVITP T0547 379 :HDSIDHLESILTLFDLGYVD 2qghA 319 :ISPCDVVGPVCESSDTFLKD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYNSRP T0547 429 :LLAIQD 2qghA 373 :LELALE T0547 438 :ERYLVNFSLFQSMPDFWGL 2qghA 382 :IRVIRKREALEDLWRLEEE Number of specific fragments extracted= 19 number of extra gaps= 0 total=16185 Will force an alignment to be made, even if fragment is small Number of alignments=759 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNF 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAF T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 35 :KGRKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGVGKSA T0547 140 :INIGF 2qghA 95 :FEIEQ T0547 146 :AAEMGHNI 2qghA 100 :ALKLNILF T0547 155 :LTIEGLNELEAIIDIAKE 2qghA 108 :LNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLH 2qghA 126 :LGIKARISIRINPN T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLL 2qghA 141 :DAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 178 :EPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEY 2qghA 216 :DLRFFDVGGGIGVSY T0547 283 :KNEKSR 2qghA 231 :ENEETI T0547 291 :TLREYANDVVFI 2qghA 237 :KLYDYAQGILNA T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 249 :LQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 346 :ENKLILKKQNPKLIDE 2qghA 284 :KRFVIVDAGMNDFLRP T0547 362 :LYDLYKSIKPSNA 2qghA 301 :LYHAKHAIRVITP T0547 379 :HDSIDHLESILTLFDLGYVD 2qghA 319 :ISPCDVVGPVCESSDTFLKD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYN T0547 426 :PADLLAIQD 2qghA 370 :PKLLELALE T0547 438 :ERYLVNFSLFQSMPDFWGLE 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 19 number of extra gaps= 0 total=16204 Will force an alignment to be made, even if fragment is small Number of alignments=760 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)E438 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Y440 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)P461 because last residue in template chain is (2qghA)L402 T0547 31 :IIDIVKE 2qghA 4 :YEELFQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 11 :HKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 37 :RKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGHNIT 2qghA 102 :KLNILFL T0547 156 :TIEGLNELEAIIDIAKE 2qghA 109 :NVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2qghA 126 :LGIKARISIRINPNIDAKTHPYISTG T0547 200 :INSKFGLTSTELIEAVNLLKENKLLEQFT 2qghA 153 :KENKFGVGEKEALEMFLWAKKSAFLEPVS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 182 :VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQFKNE 2qghA 216 :DLRFFDVGGGIGVSYENEETI T0547 291 :TLREYANDVVFILKNI 2qghA 237 :KLYDYAQGILNALQGL T0547 311 :KD 2qghA 253 :DL T0547 316 :DIFIESGRFVAANHAVLIAPVLELF 2qghA 255 :TIICEPGRSIVAESGELITQVLYEK T0547 345 :AE 2qghA 284 :KR T0547 348 :KLILKK 2qghA 286 :FVIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNA 2qghA 293 :MNDFLRPSLYHAKHAIRVITP T0547 377 :YLHDSIDHLESILTLFDLGY 2qghA 320 :SPCDVVGPVCESSDTFLKDA T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2qghA 340 :HLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELAL T0547 437 :Q 2qghA 378 :E T0547 441 :LVNFSLFQSMPDFWGLEQNF 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 21 number of extra gaps= 0 total=16225 Will force an alignment to be made, even if fragment is small Number of alignments=761 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)P461 because last residue in template chain is (2qghA)L402 T0547 31 :IIDIVKE 2qghA 4 :YEELFQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 11 :HKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 37 :RKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGHNIT 2qghA 102 :KLNILFL T0547 156 :TIEGLNELEAIIDIAKE 2qghA 109 :NVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2qghA 126 :LGIKARISIRINPNIDAKTHPYISTG T0547 200 :INSKFGLTSTELIEAVNLLKENKLLEQFT 2qghA 153 :KENKFGVGEKEALEMFLWAKKSAFLEPVS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 182 :VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQFKNE 2qghA 216 :DLRFFDVGGGIGVSYENEETI T0547 291 :TLREYANDVVF 2qghA 237 :KLYDYAQGILN T0547 306 :IAEQKKD 2qghA 248 :ALQGLDL T0547 316 :DIFIESGRFVAANHAVLIAPVLELF 2qghA 255 :TIICEPGRSIVAESGELITQVLYEK T0547 345 :AE 2qghA 284 :KR T0547 348 :KLILKK 2qghA 286 :FVIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNA 2qghA 293 :MNDFLRPSLYHAKHAIRVITP T0547 377 :YLHDSIDHLESILTLFDLGYV 2qghA 320 :SPCDVVGPVCESSDTFLKDAH T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 441 :LVNFSLFQSMPDFWGLEQNF 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 20 number of extra gaps= 0 total=16245 Will force an alignment to be made, even if fragment is small Number of alignments=762 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)P461 because last residue in template chain is (2qghA)L402 T0547 31 :IIDIVKE 2qghA 4 :YEELFQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 11 :HKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 37 :RKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGH 2qghA 102 :KLNI T0547 153 :ITLTIEGLNELEAIIDIAKE 2qghA 106 :LFLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2qghA 126 :LGIKARISIRINPNIDAKTHPYISTG T0547 200 :INSKFGLTSTELIEAVNLLKENKLLEQFT 2qghA 153 :KENKFGVGEKEALEMFLWAKKSAFLEPVS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 182 :VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQFKN 2qghA 216 :DLRFFDVGGGIGVSYENEET T0547 290 :YTLREYANDVVFILKNI 2qghA 236 :IKLYDYAQGILNALQGL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELF 2qghA 253 :DLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AE 2qghA 284 :KR T0547 348 :KLILKK 2qghA 286 :FVIVDA T0547 354 :QNPKLIDELYDLYK 2qghA 293 :MNDFLRPSLYHAKH T0547 368 :SIKPS 2qghA 309 :RVITP T0547 377 :YLHDSIDHLESILTLFDLGY 2qghA 320 :SPCDVVGPVCESSDTFLKDA T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 2qghA 340 :HLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 441 :LVNFSLFQSMPDFWGLEQNF 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 20 number of extra gaps= 0 total=16265 Will force an alignment to be made, even if fragment is small Number of alignments=763 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Y440 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)P461 because last residue in template chain is (2qghA)L402 T0547 31 :IIDIVKE 2qghA 4 :YEELFQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 11 :HKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 37 :RKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGHNIT 2qghA 102 :KLNILFL T0547 156 :TIEGLNELEAIIDIAKE 2qghA 109 :NVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2qghA 126 :LGIKARISIRINPNIDAKTHPYISTG T0547 200 :INSKFGLTSTELIEAVNLLKENKLLEQFT 2qghA 153 :KENKFGVGEKEALEMFLWAKKSAFLEPVS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 182 :VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQFKNE 2qghA 216 :DLRFFDVGGGIGVSYENEETI T0547 291 :TLREYANDVVFILKN 2qghA 237 :KLYDYAQGILNALQG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 252 :LDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AE 2qghA 284 :KR T0547 348 :KLILKK 2qghA 286 :FVIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNA 2qghA 293 :MNDFLRPSLYHAKHAIRVITP T0547 377 :YLHDSIDHLESILTLFDLGYV 2qghA 320 :SPCDVVGPVCESSDTFLKDAH T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 441 :LVNFSLFQSMPDFWGLEQNF 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 19 number of extra gaps= 0 total=16284 Will force an alignment to be made, even if fragment is small Number of alignments=764 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)P461 because last residue in template chain is (2qghA)L402 T0547 31 :IIDIVKE 2qghA 4 :YEELFQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2qghA 11 :HKTPFYLYDFDKIKQAFLNYKEAF T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 35 :KGRKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGHNIT 2qghA 102 :KLNILFL T0547 156 :TIEGLNELEAIIDIAKE 2qghA 109 :NVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2qghA 126 :LGIKARISIRINPNIDAKTHPYISTG T0547 200 :INSKFGLTSTELIEAVNLLKENKLLEQFT 2qghA 153 :KENKFGVGEKEALEMFLWAKKSAFLEPVS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 182 :VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQFKNE 2qghA 216 :DLRFFDVGGGIGVSYENEETI T0547 291 :TLREYANDVVFI 2qghA 237 :KLYDYAQGILNA T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 249 :LQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AE 2qghA 284 :KR T0547 348 :KLILKK 2qghA 286 :FVIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNA 2qghA 293 :MNDFLRPSLYHAKHAIRVITP T0547 377 :YLHDSIDHLESILTLFDLGY 2qghA 320 :SPCDVVGPVCESSDTFLKDA T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 2qghA 340 :HLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 441 :LVNFSLFQSMPDFWGLEQNF 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 19 number of extra gaps= 0 total=16303 Will force an alignment to be made, even if fragment is small Number of alignments=765 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Y440 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)P461 because last residue in template chain is (2qghA)L402 T0547 31 :IIDIVKE 2qghA 4 :YEELFQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2qghA 11 :HKTPFYLYDFDKIKQAFLNYKEAF T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 35 :KGRKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGHNIT 2qghA 102 :KLNILFL T0547 156 :TIEGLNELEAIIDIAKE 2qghA 109 :NVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2qghA 126 :LGIKARISIRINPNIDAKTHPYISTG T0547 200 :INSKFGLTSTELIEAVNLLKENKLLEQFT 2qghA 153 :KENKFGVGEKEALEMFLWAKKSAFLEPVS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 182 :VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQFKNE 2qghA 216 :DLRFFDVGGGIGVSYENEETI T0547 291 :TLREYANDVV 2qghA 237 :KLYDYAQGIL T0547 308 :EQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 247 :NALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AE 2qghA 284 :KR T0547 348 :KLILKK 2qghA 286 :FVIVDA T0547 354 :QNPKLIDELYDLYKS 2qghA 293 :MNDFLRPSLYHAKHA T0547 369 :IKPS 2qghA 310 :VITP T0547 377 :YLHDSIDHLESILTLFDLGYV 2qghA 320 :SPCDVVGPVCESSDTFLKDAH T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 441 :LVNFSLFQSMPDFWGLEQNF 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 20 number of extra gaps= 0 total=16323 Will force an alignment to be made, even if fragment is small Number of alignments=766 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)E438 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Y440 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 31 :IIDIVKE 2qghA 4 :YEELFQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 11 :HKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 37 :RKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGHNIT 2qghA 102 :KLNILFL T0547 156 :TIEGLNELEAIIDIAKE 2qghA 109 :NVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2qghA 126 :LGIKARISIRINPNIDAKTHPYISTG T0547 200 :INSKFGLTSTELIEAVNLLKENKLLEQFT 2qghA 153 :KENKFGVGEKEALEMFLWAKKSAFLEPVS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 182 :VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQFKNE 2qghA 216 :DLRFFDVGGGIGVSYENEETI T0547 291 :TLREYANDVVFILKNI 2qghA 237 :KLYDYAQGILNALQGL T0547 311 :KD 2qghA 253 :DL T0547 316 :DIFIESGRFVAANHAVLIAPVLELF 2qghA 255 :TIICEPGRSIVAESGELITQVLYEK T0547 345 :AE 2qghA 284 :KR T0547 348 :KLILKK 2qghA 286 :FVIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNA 2qghA 293 :MNDFLRPSLYHAKHAIRVITP T0547 377 :YLHDSIDHLESILTLFDLGY 2qghA 320 :SPCDVVGPVCESSDTFLKDA T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 2qghA 340 :HLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELAL T0547 437 :Q 2qghA 378 :E T0547 441 :LVNFSLFQSMPDFWGLEQ 2qghA 382 :IRVIRKREALEDLWRLEE Number of specific fragments extracted= 21 number of extra gaps= 0 total=16344 Will force an alignment to be made, even if fragment is small Number of alignments=767 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 31 :IIDIVKE 2qghA 4 :YEELFQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 11 :HKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 37 :RKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGHNIT 2qghA 102 :KLNILFL T0547 156 :TIEGLNELEAIIDIAKE 2qghA 109 :NVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2qghA 126 :LGIKARISIRINPNIDAKTHPYISTG T0547 200 :INSKFGLTSTELIEAVNLLKENKLLEQFT 2qghA 153 :KENKFGVGEKEALEMFLWAKKSAFLEPVS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 182 :VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQFKNE 2qghA 216 :DLRFFDVGGGIGVSYENEETI T0547 291 :TLREYANDVVF 2qghA 237 :KLYDYAQGILN T0547 306 :IAEQKKD 2qghA 248 :ALQGLDL T0547 316 :DIFIESGRFVAANHAVLIAPVLELF 2qghA 255 :TIICEPGRSIVAESGELITQVLYEK T0547 345 :AE 2qghA 284 :KR T0547 348 :KLILKK 2qghA 286 :FVIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNA 2qghA 293 :MNDFLRPSLYHAKHAIRVITP T0547 377 :YLHDSIDHLESILTLFDLGYV 2qghA 320 :SPCDVVGPVCESSDTFLKDAH T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 441 :LVNFSLFQSMPDFWGLEQNF 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 20 number of extra gaps= 0 total=16364 Will force an alignment to be made, even if fragment is small Number of alignments=768 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 31 :IIDIVKE 2qghA 4 :YEELFQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 11 :HKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 37 :RKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGH 2qghA 102 :KLNI T0547 153 :ITLTIEGLNELEAIIDIAKE 2qghA 106 :LFLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2qghA 126 :LGIKARISIRINPNIDAKTHPYISTG T0547 200 :INSKFGLTSTELIEAVNLLKENKLLEQFT 2qghA 153 :KENKFGVGEKEALEMFLWAKKSAFLEPVS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 182 :VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQFKN 2qghA 216 :DLRFFDVGGGIGVSYENEET T0547 290 :YTLREYANDVVFILKNI 2qghA 236 :IKLYDYAQGILNALQGL T0547 314 :EPDIFIESGRFVAANHAVLIAPVLELF 2qghA 253 :DLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AE 2qghA 284 :KR T0547 348 :KLILKK 2qghA 286 :FVIVDA T0547 354 :QNPKLIDELYDLYK 2qghA 293 :MNDFLRPSLYHAKH T0547 368 :SIKPS 2qghA 309 :RVITP T0547 377 :YLHDSIDHLESILTLFDLGY 2qghA 320 :SPCDVVGPVCESSDTFLKDA T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 2qghA 340 :HLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 441 :LVNFSLFQSMPDFWGLEQN 2qghA 382 :IRVIRKREALEDLWRLEEE Number of specific fragments extracted= 20 number of extra gaps= 0 total=16384 Will force an alignment to be made, even if fragment is small Number of alignments=769 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Y440 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 31 :IIDIVKE 2qghA 4 :YEELFQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 11 :HKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 37 :RKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGHNIT 2qghA 102 :KLNILFL T0547 156 :TIEGLNELEAIIDIAKE 2qghA 109 :NVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2qghA 126 :LGIKARISIRINPNIDAKTHPYISTG T0547 200 :INSKFGLTSTELIEAVNLLKENKLLEQFT 2qghA 153 :KENKFGVGEKEALEMFLWAKKSAFLEPVS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 182 :VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQFKNE 2qghA 216 :DLRFFDVGGGIGVSYENEETI T0547 291 :TLREYANDVVFILKN 2qghA 237 :KLYDYAQGILNALQG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 252 :LDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AE 2qghA 284 :KR T0547 348 :KLILKK 2qghA 286 :FVIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNA 2qghA 293 :MNDFLRPSLYHAKHAIRVITP T0547 377 :YLHDSIDHLESILTLFDLGYV 2qghA 320 :SPCDVVGPVCESSDTFLKDAH T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 441 :LVNFSLFQSMPDFWGLEQN 2qghA 382 :IRVIRKREALEDLWRLEEE Number of specific fragments extracted= 19 number of extra gaps= 0 total=16403 Will force an alignment to be made, even if fragment is small Number of alignments=770 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)P461 because last residue in template chain is (2qghA)L402 T0547 31 :IIDIVKE 2qghA 4 :YEELFQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2qghA 11 :HKTPFYLYDFDKIKQAFLNYKEAF T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 35 :KGRKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGHNIT 2qghA 102 :KLNILFL T0547 156 :TIEGLNELEAIIDIAKE 2qghA 109 :NVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2qghA 126 :LGIKARISIRINPNIDAKTHPYISTG T0547 200 :INSKFGLTSTELIEAVNLLKENKLLEQFT 2qghA 153 :KENKFGVGEKEALEMFLWAKKSAFLEPVS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 182 :VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQFKNE 2qghA 216 :DLRFFDVGGGIGVSYENEETI T0547 291 :TLREYANDVVFI 2qghA 237 :KLYDYAQGILNA T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 249 :LQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AE 2qghA 284 :KR T0547 348 :KLILKK 2qghA 286 :FVIVDA T0547 354 :QNPKLIDELYDLYKSIKPSNA 2qghA 293 :MNDFLRPSLYHAKHAIRVITP T0547 377 :YLHDSIDHLESILTLFDLGY 2qghA 320 :SPCDVVGPVCESSDTFLKDA T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 2qghA 340 :HLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 441 :LVNFSLFQSMPDFWGLEQNF 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 19 number of extra gaps= 0 total=16422 Will force an alignment to be made, even if fragment is small Number of alignments=771 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Y440 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)P461 because last residue in template chain is (2qghA)L402 T0547 31 :IIDIVKE 2qghA 4 :YEELFQT T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2qghA 11 :HKTPFYLYDFDKIKQAFLNYKEAF T0547 75 :YKGGFNAVYPLKVNQYPGFVKNLVKLGK 2qghA 35 :KGRKSLICYALKANSNLSILSLLAHLES T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2qghA 63 :GADCVSIGEIQRALKAGIKPYRIVFSGV T0547 135 :KDRELINIGF 2qghA 92 :KSAFEIEQAL T0547 148 :EMGHNIT 2qghA 102 :KLNILFL T0547 156 :TIEGLNELEAIIDIAKE 2qghA 109 :NVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2qghA 126 :LGIKARISIRINPNIDAKTHPYISTG T0547 200 :INSKFGLTSTELIEAVNLLKENKLLEQFT 2qghA 153 :KENKFGVGEKEALEMFLWAKKSAFLEPVS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 2qghA 182 :VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI T0547 265 :NLKAINLGGGLAVEYSQFKNE 2qghA 216 :DLRFFDVGGGIGVSYENEETI T0547 291 :TLREYANDVV 2qghA 237 :KLYDYAQGIL T0547 308 :EQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 247 :NALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AE 2qghA 284 :KR T0547 348 :KLILKK 2qghA 286 :FVIVDA T0547 354 :QNPKLIDELYDLYKS 2qghA 293 :MNDFLRPSLYHAKHA T0547 369 :IKPS 2qghA 310 :VITP T0547 377 :YLHDSIDHLESILTLFDLGYV 2qghA 320 :SPCDVVGPVCESSDTFLKDAH T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 2qghA 341 :LPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 441 :LVNFSLFQSMPDFWGLEQNF 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 20 number of extra gaps= 0 total=16442 Will force an alignment to be made, even if fragment is small Number of alignments=772 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)E438 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Y440 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)N603 because last residue in template chain is (2qghA)L402 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGR T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2qghA 38 :KSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNIL T0547 154 :TLTIEGLNELEAIIDIAKE 2qghA 107 :FLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGI 2qghA 126 :LGIKARISIRINPNIDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2qghA 147 :YISTGLKENKFGVGEKEALEMFLWAKKSA T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2qghA 176 :FLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIAL T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2qghA 214 :GIDLRFFDVGGGIGVSYENEETIKLY T0547 301 :FILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 240 :DYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 2qghA 284 :KRFVIVDAGMNDFLRPSLYHAKHAIRVI T0547 373 :N 2qghA 313 :P T0547 379 :HDSIDHLESILTLFDLGYVDLQDR 2qghA 319 :ISPCDVVGPVCESSDTFLKDAHLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2qghA 344 :LEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 441 :LVNFSLFQSMPDFWGLEQN 2qghA 382 :IRVIRKREALEDLWRLEEE T0547 602 :D 2qghA 401 :G Number of specific fragments extracted= 15 number of extra gaps= 0 total=16457 Will force an alignment to be made, even if fragment is small Number of alignments=773 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)F460 because last residue in template chain is (2qghA)L402 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 37 :RKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNIL T0547 154 :TLTIEGLNELEAIIDIAKE 2qghA 107 :FLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGI 2qghA 126 :LGIKARISIRINPNIDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2qghA 147 :YISTGLKENKFGVGEKEALEMFLWAKKSA T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2qghA 176 :FLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIAL T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2qghA 214 :GIDLRFFDVGGGIGVSYENEETIK T0547 299 :VVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 238 :LYDYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 2qghA 284 :KRFVIVDAGMNDFLRPSLYHAKHAIRVI T0547 373 :N 2qghA 313 :P T0547 379 :HDSIDHLESILTLFDLGYVDLQDR 2qghA 319 :ISPCDVVGPVCESSDTFLKDAHLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2qghA 344 :LEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 440 :YLVNFSLFQSMPDFWGLEQN 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 14 number of extra gaps= 0 total=16471 Will force an alignment to be made, even if fragment is small Number of alignments=774 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)F460 because last residue in template chain is (2qghA)L402 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGR T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2qghA 38 :KSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNIL T0547 154 :TLTIEGLNELEAIIDIAKE 2qghA 107 :FLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGI 2qghA 126 :LGIKARISIRINPNIDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2qghA 147 :YISTGLKENKFGVGEKEALEMFLWAKKSA T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2qghA 176 :FLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIAL T0547 263 :AKNLKAINLGGGLAVEYSQ 2qghA 214 :GIDLRFFDVGGGIGVSYEN T0547 282 :FK 2qghA 236 :IK T0547 292 :LREYANDVV 2qghA 238 :LYDYAQGIL T0547 308 :EQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 247 :NALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 2qghA 284 :KRFVIVDAGMNDFLRPSLYHAKHAIRVI T0547 373 :N 2qghA 313 :P T0547 379 :HDSIDHLESILTLFDLGYVDLQDR 2qghA 319 :ISPCDVVGPVCESSDTFLKDAHLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2qghA 344 :LEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 440 :YLVNFSLFQSMPDFWGLEQN 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 16 number of extra gaps= 0 total=16487 Will force an alignment to be made, even if fragment is small Number of alignments=775 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)F460 because last residue in template chain is (2qghA)L402 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGR T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2qghA 38 :KSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNIL T0547 154 :TLTIEGLNELEAIIDIAKE 2qghA 107 :FLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGI 2qghA 126 :LGIKARISIRINPNIDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2qghA 147 :YISTGLKENKFGVGEKEALEMFLWAKKSA T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2qghA 176 :FLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIAL T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2qghA 214 :GIDLRFFDVGGGIGVSYENEETIK T0547 299 :VVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 238 :LYDYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 2qghA 284 :KRFVIVDAGMNDFLRPSLYHAKHAIRVI T0547 373 :N 2qghA 313 :P T0547 379 :HDSIDHLESILTLFDLGYVDLQDR 2qghA 319 :ISPCDVVGPVCESSDTFLKDAHLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2qghA 344 :LEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 440 :YLVNFSLFQSMPDFWGLEQN 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 14 number of extra gaps= 0 total=16501 Will force an alignment to be made, even if fragment is small Number of alignments=776 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)Q437 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)Y605 because last residue in template chain is (2qghA)L402 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFK T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 36 :GRKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNIL T0547 154 :TLTIEGLNELEAIIDIAKE 2qghA 107 :FLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGI 2qghA 126 :LGIKARISIRINPNIDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2qghA 147 :YISTGLKENKFGVGEKEALEMFLWAKKSA T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2qghA 176 :FLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIAL T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2qghA 214 :GIDLRFFDVGGGIGVSYENEETIK T0547 292 :LREYANDVV 2qghA 238 :LYDYAQGIL T0547 308 :EQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 247 :NALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 2qghA 284 :KRFVIVDAGMNDFLRPSLYHAKHAIRVI T0547 373 :N 2qghA 313 :P T0547 379 :HDSIDHLESILTLFDLGYVDLQDR 2qghA 319 :ISPCDVVGPVCESSDTFLKDAHLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLL 2qghA 344 :LEPGDKIAIEKVGAYGSSMASQYNSRPK T0547 440 :YLVNFSLFQSMPDFWGLEQN 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 15 number of extra gaps= 0 total=16516 Will force an alignment to be made, even if fragment is small Number of alignments=777 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)F460 because last residue in template chain is (2qghA)L402 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFK T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 36 :GRKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNIL T0547 154 :TLTIEGLNELEAIIDIAKE 2qghA 107 :FLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGI 2qghA 126 :LGIKARISIRINPNIDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2qghA 147 :YISTGLKENKFGVGEKEALEMFLWAKKSA T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2qghA 176 :FLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIAL T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2qghA 214 :GIDLRFFDVGGGIGVSYENEETIK T0547 299 :VVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 238 :LYDYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 2qghA 284 :KRFVIVDAGMNDFLRPSLYHAKHAIRVI T0547 373 :N 2qghA 313 :P T0547 379 :HDSIDHLESILTLFDLGYVDLQDR 2qghA 319 :ISPCDVVGPVCESSDTFLKDAHLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2qghA 344 :LEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 440 :YLVNFSLFQSMPDFWGLEQN 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 14 number of extra gaps= 0 total=16530 Will force an alignment to be made, even if fragment is small Number of alignments=778 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)E438 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)Y440 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGR T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2qghA 38 :KSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNIL T0547 154 :TLTIEGLNELEAIIDIAKE 2qghA 107 :FLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGI 2qghA 126 :LGIKARISIRINPNIDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2qghA 147 :YISTGLKENKFGVGEKEALEMFLWAKKSA T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2qghA 176 :FLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIAL T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2qghA 214 :GIDLRFFDVGGGIGVSYENEETIKLY T0547 301 :FILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 240 :DYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 2qghA 284 :KRFVIVDAGMNDFLRPSLYHAKHAIRVI T0547 373 :N 2qghA 313 :P T0547 379 :HDSIDHLESILTLFDLGYVDLQDR 2qghA 319 :ISPCDVVGPVCESSDTFLKDAHLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2qghA 344 :LEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 441 :LVNFSLFQSMPDFWGLEQ 2qghA 382 :IRVIRKREALEDLWRLEE Number of specific fragments extracted= 14 number of extra gaps= 0 total=16544 Will force an alignment to be made, even if fragment is small Number of alignments=779 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)F460 because last residue in template chain is (2qghA)L402 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 37 :RKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNIL T0547 154 :TLTIEGLNELEAIIDIAKE 2qghA 107 :FLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGI 2qghA 126 :LGIKARISIRINPNIDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2qghA 147 :YISTGLKENKFGVGEKEALEMFLWAKKSA T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2qghA 176 :FLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIAL T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2qghA 214 :GIDLRFFDVGGGIGVSYENEETIK T0547 299 :VVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 238 :LYDYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 2qghA 284 :KRFVIVDAGMNDFLRPSLYHAKHAIRVI T0547 373 :N 2qghA 313 :P T0547 379 :HDSIDHLESILTLFDLGYVDLQDR 2qghA 319 :ISPCDVVGPVCESSDTFLKDAHLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2qghA 344 :LEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 440 :YLVNFSLFQSMPDFWGLEQN 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 14 number of extra gaps= 0 total=16558 Will force an alignment to be made, even if fragment is small Number of alignments=780 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGR T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2qghA 38 :KSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNIL T0547 154 :TLTIEGLNELEAIIDIAKE 2qghA 107 :FLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGI 2qghA 126 :LGIKARISIRINPNIDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2qghA 147 :YISTGLKENKFGVGEKEALEMFLWAKKSA T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2qghA 176 :FLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIAL T0547 263 :AKNLKAINLGGGLAVEYSQ 2qghA 214 :GIDLRFFDVGGGIGVSYEN T0547 282 :FK 2qghA 236 :IK T0547 292 :LREYANDVV 2qghA 238 :LYDYAQGIL T0547 308 :EQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 247 :NALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 2qghA 284 :KRFVIVDAGMNDFLRPSLYHAKHAIRVI T0547 373 :N 2qghA 313 :P T0547 379 :HDSIDHLESILTLFDLGYVDLQDR 2qghA 319 :ISPCDVVGPVCESSDTFLKDAHLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2qghA 344 :LEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 440 :YLVNFSLFQSMPDFWGLE 2qghA 382 :IRVIRKREALEDLWRLEE Number of specific fragments extracted= 16 number of extra gaps= 0 total=16574 Will force an alignment to be made, even if fragment is small Number of alignments=781 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGR T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2qghA 38 :KSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNIL T0547 154 :TLTIEGLNELEAIIDIAKE 2qghA 107 :FLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGI 2qghA 126 :LGIKARISIRINPNIDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2qghA 147 :YISTGLKENKFGVGEKEALEMFLWAKKSA T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2qghA 176 :FLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIAL T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2qghA 214 :GIDLRFFDVGGGIGVSYENEETIK T0547 299 :VVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 238 :LYDYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 2qghA 284 :KRFVIVDAGMNDFLRPSLYHAKHAIRVI T0547 373 :N 2qghA 313 :P T0547 379 :HDSIDHLESILTLFDLGYVDLQDR 2qghA 319 :ISPCDVVGPVCESSDTFLKDAHLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2qghA 344 :LEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 440 :YLVNFSLFQSMPDFWGLEQN 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 14 number of extra gaps= 0 total=16588 Will force an alignment to be made, even if fragment is small Number of alignments=782 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)N541 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2qghA)K381 Warning: unaligning (T0547)K543 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFK T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 36 :GRKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNIL T0547 154 :TLTIEGLNELEAIIDIAKE 2qghA 107 :FLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGI 2qghA 126 :LGIKARISIRINPNIDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2qghA 147 :YISTGLKENKFGVGEKEALEMFLWAKKSA T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2qghA 176 :FLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIAL T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2qghA 214 :GIDLRFFDVGGGIGVSYENEETIK T0547 292 :LREYANDVV 2qghA 238 :LYDYAQGIL T0547 308 :EQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 247 :NALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 2qghA 284 :KRFVIVDAGMNDFLRPSLYHAKHAIRVI T0547 373 :N 2qghA 313 :P T0547 379 :HDSIDHLESILTLFDLGYVDLQDR 2qghA 319 :ISPCDVVGPVCESSDTFLKDAHLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLA 2qghA 344 :LEPGDKIAIEKVGAYGSSMASQYNSRPKL T0547 535 :EAIISI 2qghA 373 :LELALE T0547 544 :GYEVEGIIEAQS 2qghA 382 :IRVIRKREALED Number of specific fragments extracted= 16 number of extra gaps= 0 total=16604 Will force an alignment to be made, even if fragment is small Number of alignments=783 # 2qghA read from all-align.a2m # found chain 2qghA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (2qghA)N3 Warning: unaligning (T0547)S341 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)N283 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)N283 Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2qghA)E318 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2qghA)E318 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2qghA)K381 Warning: unaligning (T0547)F460 because last residue in template chain is (2qghA)L402 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2qghA 4 :YEELFQTHKTPFYLYDFDKIKQAFLNYKEAFK T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2qghA 36 :GRKSLICYALKANSNLSILSLLAHLE T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2qghA 62 :SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNIL T0547 154 :TLTIEGLNELEAIIDIAKE 2qghA 107 :FLNVESFMELKTIETIAQS T0547 174 :FKPKPNIGLRVRLHSAGVGI 2qghA 126 :LGIKARISIRINPNIDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2qghA 147 :YISTGLKENKFGVGEKEALEMFLWAKKSA T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 2qghA 176 :FLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIAL T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2qghA 214 :GIDLRFFDVGGGIGVSYENEETIK T0547 299 :VVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELF 2qghA 238 :LYDYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEK T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 2qghA 284 :KRFVIVDAGMNDFLRPSLYHAKHAIRVI T0547 373 :N 2qghA 313 :P T0547 379 :HDSIDHLESILTLFDLGYVDLQDR 2qghA 319 :ISPCDVVGPVCESSDTFLKDAHLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2qghA 344 :LEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE T0547 440 :YLVNFSLFQSMPDFWGLEQN 2qghA 382 :IRVIRKREALEDLWRLEEEG Number of specific fragments extracted= 14 number of extra gaps= 0 total=16618 Will force an alignment to be made, even if fragment is small Number of alignments=784 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)A69 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)K71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)I319 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)H329 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V331 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E338 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)F340 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)K353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)E542 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)G544 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)A569 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)M571 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 T0547 1 :MMD 2vd8A 3 :EAP T0547 43 :YKGPLLL 2vd8A 7 :YRDTWVE T0547 57 :KQIENIYGNFNK 2vd8A 14 :VDLDAIYNNVTH T0547 72 :EFGY 2vd8A 29 :FIPS T0547 78 :GFNAVYP 2vd8A 33 :DVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLG 2vd8A 56 :ALEAG T0547 106 :YGLEAGSKAELLLAMAYNNEG 2vd8A 62 :TRLAVAFLDEALVLRRAGITA T0547 128 :PITVNGFKDRE 2vd8A 83 :PILVLGPSPPR T0547 141 :NIGFIAAE 2vd8A 94 :DINVAAEN T0547 152 :NITLTIE 2vd8A 102 :DVALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :A 2vd8A 120 :W T0547 173 :RFKPK 2vd8A 121 :DGSST T0547 181 :GLRVR 2vd8A 129 :HINFD T0547 197 :SG 2vd8A 134 :SG T0547 201 :NSKFGLTS 2vd8A 136 :MGRIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLL 2vd8A 154 :LEGAPFL T0547 226 :QFTMIHFHLG 2vd8A 161 :ELEGVYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYSQ 2vd8A 204 :VHTANSAATLRFQ T0547 288 :RNYTLREYANDVVFILKNI 2vd8A 218 :ITFNAVRIGIAMYGLSPSV T0547 312 :DLEPDIF 2vd8A 237 :EIRPFLP T0547 322 :GRFVAAN 2vd8A 247 :EPALSLH T0547 332 :LIAPVL 2vd8A 257 :AHIKQV T0547 341 :SQEYAENKLI 2vd8A 266 :DGISYNVTYR T0547 354 :QNPKLIDELYDLYKSIKPSNALEYL 2vd8A 280 :EWIATVAIGYADGWLRRLQGFEVLV T0547 541 :N 2vd8A 305 :N T0547 545 :YEVEGIIEAQSILDTLED 2vd8A 309 :VPIVGRVTMDQFMIHLPC T0547 564 :DYDIH 2vd8A 327 :EVPLG T0547 572 :DILNERISNSKLVNDK 2vd8A 335 :TLIGRQGDEYISATEV T0547 588 :QKKHILGELYLFLNDNGYLKSIGV 2vd8A 353 :YSGTINYEIITTISFRVPRIFIRN Number of specific fragments extracted= 37 number of extra gaps= 0 total=16655 Will force an alignment to be made, even if fragment is small Number of alignments=785 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)A69 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)K71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)I319 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)H329 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V331 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E338 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)F340 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)K353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)I382 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)S387 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L389 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 T0547 57 :KQIENIYGNFNK 2vd8A 14 :VDLDAIYNNVTH T0547 72 :EFGY 2vd8A 29 :FIPS T0547 78 :GFNAVYP 2vd8A 33 :DVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLG 2vd8A 56 :ALEAG T0547 106 :YGLEAGSKAELLLAMAYNNEG 2vd8A 62 :TRLAVAFLDEALVLRRAGITA T0547 128 :PITVNGFKDRE 2vd8A 83 :PILVLGPSPPR T0547 141 :NIGFIAAE 2vd8A 94 :DINVAAEN T0547 152 :NITLTIE 2vd8A 102 :DVALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :A 2vd8A 120 :W T0547 173 :RFKPK 2vd8A 121 :DGSST T0547 181 :GLRVR 2vd8A 129 :HINFD T0547 197 :SG 2vd8A 134 :SG T0547 201 :NSKFGLTS 2vd8A 136 :MGRIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLL 2vd8A 154 :LEGAPFL T0547 226 :QFTMIHFHLG 2vd8A 161 :ELEGVYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYSQ 2vd8A 204 :VHTANSAATLRFQ T0547 288 :RNYTLREYANDVVFILKNI 2vd8A 218 :ITFNAVRIGIAMYGLSPSV T0547 312 :DLEPDIF 2vd8A 237 :EIRPFLP T0547 322 :GRFVAAN 2vd8A 247 :EPALSLH T0547 332 :LIAPVL 2vd8A 257 :AHIKQV T0547 341 :SQEYAENKLI 2vd8A 266 :DGISYNVTYR T0547 354 :QNPKLIDELYDLYKSIKPSNALEYLH 2vd8A 280 :EWIATVAIGYADGWLRRLQGFEVLVN T0547 383 :D 2vd8A 309 :V T0547 384 :HLE 2vd8A 329 :PLG T0547 390 :TLFDLGYVDLQDRSNAEILTHLI 2vd8A 335 :TLIGRQGDEYISATEVAEYSGTI Number of specific fragments extracted= 33 number of extra gaps= 0 total=16688 Will force an alignment to be made, even if fragment is small Number of alignments=786 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)A69 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)K71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)E542 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)G544 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)A569 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)M571 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 T0547 45 :GPLLL 2vd8A 4 :APFYR T0547 52 :PHLIQKQIENIYGNFNK 2vd8A 9 :DTWVEVDLDAIYNNVTH T0547 72 :EFGY 2vd8A 29 :FIPS T0547 78 :GFNAVYP 2vd8A 33 :DVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLG 2vd8A 56 :ALEAG T0547 106 :YGLEAGSKAELLLAMAYNNEG 2vd8A 62 :TRLAVAFLDEALVLRRAGITA T0547 128 :PITVNGFKDRE 2vd8A 83 :PILVLGPSPPR T0547 141 :NIGFIAAE 2vd8A 94 :DINVAAEN T0547 152 :NITLTIE 2vd8A 102 :DVALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AKERF 2vd8A 120 :WDGSS T0547 177 :K 2vd8A 125 :T T0547 181 :GLRVRLHS 2vd8A 129 :HINFDSGM T0547 202 :SKFGLTS 2vd8A 137 :GRIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLL 2vd8A 154 :LEGAPFL T0547 226 :QFTMIHFHLG 2vd8A 161 :ELEGVYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYS 2vd8A 204 :VHTANSAATLRF T0547 290 :YT 2vd8A 220 :FN T0547 537 :IISIN 2vd8A 301 :EVLVN T0547 545 :YEVEGIIEAQSILDTLED 2vd8A 309 :VPIVGRVTMDQFMIHLPC T0547 564 :DYDIH 2vd8A 327 :EVPLG T0547 572 :DILNER 2vd8A 335 :TLIGRQ T0547 578 :ISNSKLVNDK 2vd8A 345 :ISATEVAEYS T0547 590 :KHILGELYLFLNDNGYLKSI 2vd8A 355 :GTINYEIITTISFRVPRIFI Number of specific fragments extracted= 31 number of extra gaps= 0 total=16719 Will force an alignment to be made, even if fragment is small Number of alignments=787 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)A69 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)K71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)A326 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E361 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 T0547 56 :QKQIENIYGNFNK 2vd8A 13 :EVDLDAIYNNVTH T0547 72 :EFGY 2vd8A 29 :FIPS T0547 78 :GFNAVYP 2vd8A 33 :DVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLG 2vd8A 56 :ALEAG T0547 106 :YGLEAGSKAELLLAMAYNNEG 2vd8A 62 :TRLAVAFLDEALVLRRAGITA T0547 128 :PITVNGFKDRE 2vd8A 83 :PILVLGPSPPR T0547 141 :NIGFIAAE 2vd8A 94 :DINVAAEN T0547 152 :NITLTIE 2vd8A 102 :DVALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AKERF 2vd8A 120 :WDGSS T0547 177 :K 2vd8A 125 :T T0547 181 :GLRVRLHS 2vd8A 129 :HINFDSGM T0547 202 :SKFGLTS 2vd8A 137 :GRIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLL 2vd8A 154 :LEGAPFL T0547 226 :QFTMIHFHLG 2vd8A 161 :ELEGVYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYS 2vd8A 204 :VHTANSAATLRF T0547 290 :YTLREYANDVVFILKNI 2vd8A 220 :FNAVRIGIAMYGLSPSV T0547 314 :EPDIFIE 2vd8A 237 :EIRPFLP T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 343 :EYAENKLILKKQNPKLID 2vd8A 288 :GYADGWLRRLQGFEVLVN T0547 363 :YDLYKSIKPS 2vd8A 322 :IHLPCEVPLG Number of specific fragments extracted= 29 number of extra gaps= 0 total=16748 Will force an alignment to be made, even if fragment is small Number of alignments=788 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)A69 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)K71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)L100 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)T209 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)I212 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)A214 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)N216 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)N265 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)K267 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)Y295 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)N297 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)N305 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)A307 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E314 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)D316 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)A327 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)H329 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)E542 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)G544 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)Y565 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)I567 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 T0547 2 :MDY 2vd8A 4 :APF T0547 25 :YEKKPAIID 2vd8A 7 :YRDTWVEVD T0547 59 :IENIYGNFNK 2vd8A 16 :LDAIYNNVTH T0547 72 :EFG 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :NQYPGFVKNL 2vd8A 43 :NAYGHDYVPV T0547 101 :GKDYNYG 2vd8A 56 :ALEAGAT T0547 117 :LLAMAYNNEGAPITVNGFKDRELINIGFIA 2vd8A 63 :RLAVAFLDEALVLRRAGITAPILVLGPSPP T0547 147 :AEMGHNITLTIE 2vd8A 97 :VAAENDVALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :A 2vd8A 120 :W T0547 173 :RFKPK 2vd8A 121 :DGSST T0547 181 :GLRV 2vd8A 129 :HINF T0547 202 :SKFGLTS 2vd8A 137 :GRIGIRE T0547 215 :V 2vd8A 150 :F T0547 217 :LLKENKLLEQFTMIHFHLGSQI 2vd8A 154 :LEGAPFLELEGVYTHFATADEV T0547 240 :EIHPL 2vd8A 176 :ETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGAK 2vd8A 197 :FGVD T0547 268 :AINLGGGLAVEYSQFKNEKSR 2vd8A 204 :VHTANSAATLRFQGITFNAVR T0547 289 :N 2vd8A 237 :E T0547 290 :YTLRE 2vd8A 239 :RPFLP T0547 298 :DVVFILK 2vd8A 247 :EPALSLH T0547 308 :EQKKDL 2vd8A 257 :AHIKQV T0547 317 :IFIESGRFVA 2vd8A 266 :DGISYNVTYR T0547 330 :AVLIAPV 2vd8A 279 :EEWIATV T0547 539 :SIN 2vd8A 303 :LVN T0547 545 :YEVEGIIEAQSILDTLEDL 2vd8A 309 :VPIVGRVTMDQFMIHLPCE T0547 568 :HAIMDILNERISNSKLV 2vd8A 335 :TLIGRQGDEYISATEVA T0547 587 :KQKKHILGELYLFLNDNGYLKSI 2vd8A 352 :EYSGTINYEIITTISFRVPRIFI T0547 610 :GV 2vd8A 388 :DI Number of specific fragments extracted= 31 number of extra gaps= 0 total=16779 Will force an alignment to be made, even if fragment is small Number of alignments=789 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)A114 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)L116 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)T209 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)I212 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)A214 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)N216 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 T0547 106 :YGLEAGSK 2vd8A 45 :YGHDYVPV T0547 117 :L 2vd8A 56 :A T0547 118 :LAMAYNNEGAPITVNGFKDRELINIGFIAAE 2vd8A 64 :LAVAFLDEALVLRRAGITAPILVLGPSPPRD T0547 149 :MGHNITLTIE 2vd8A 99 :AENDVALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :A 2vd8A 120 :W T0547 173 :RFKPK 2vd8A 121 :DGSST T0547 181 :GLRV 2vd8A 129 :HINF T0547 202 :SKFGLTS 2vd8A 137 :GRIGIRE T0547 215 :V 2vd8A 150 :F T0547 217 :LLKENKLLEQFTMIHFHLGSQITE 2vd8A 154 :LEGAPFLELEGVYTHFATADEVET T0547 242 :HPL 2vd8A 178 :SYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW Number of specific fragments extracted= 13 number of extra gaps= 0 total=16792 Will force an alignment to be made, even if fragment is small Number of alignments=790 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)R39 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)E158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)E164 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I166 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)T209 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)A326 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E361 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)Y363 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)V436 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)E438 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)N575 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)R577 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 Warning: unaligning (T0547)I609 because last residue in template chain is (2vd8A)I389 T0547 40 :DDGYKGPLLLRFPHLIQKQIEN 2vd8A 4 :APFYRDTWVEVDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFK 2vd8A 62 :TRLAVAFLDEALVLRRAGITAPILVLGPSP T0547 139 :LINIGF 2vd8A 92 :PRDINV T0547 146 :AAEMGHNI 2vd8A 98 :AAENDVAL T0547 155 :LTI 2vd8A 106 :TVF T0547 159 :GLNEL 2vd8A 112 :WVDEA T0547 167 :IDIAKE 2vd8A 120 :WDGSST T0547 183 :RVRLH 2vd8A 129 :HINFD T0547 199 :GINSKFGLTS 2vd8A 134 :SGMGRIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLE 2vd8A 154 :LEGAPFLE T0547 227 :FTMIHFHLGS 2vd8A 162 :LEGVYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :IN 2vd8A 204 :VH T0547 281 :QFKNEKSR 2vd8A 206 :TANSAATL T0547 291 :TLREY 2vd8A 214 :RFQGI T0547 296 :ANDVVFILKNIAEQKKDL 2vd8A 222 :AVRIGIAMYGLSPSVEIR T0547 315 :PDI 2vd8A 240 :PFL T0547 323 :R 2vd8A 243 :P T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 343 :EYAENKL 2vd8A 266 :DGISYNV T0547 358 :LID 2vd8A 273 :TYR T0547 364 :DLYKSIKPSNALE 2vd8A 279 :EEWIATVAIGYAD T0547 399 :LQDRSNAEILT 2vd8A 294 :LRRLQGFEVLV T0547 410 :HLITKKAILL 2vd8A 309 :VPIVGRVTMD T0547 423 :KQN 2vd8A 319 :QFM T0547 426 :PADLLAIQ 2vd8A 323 :HLPCEVPL T0547 435 :E 2vd8A 331 :G T0547 439 :R 2vd8A 335 :T T0547 441 :LVNFSLFQSMP 2vd8A 336 :LIGRQGDEYIS T0547 545 :YEVEGIIEAQSILDTLEDLDYDIHAIMDIL 2vd8A 347 :ATEVAEYSGTINYEIITTISFRVPRIFIRN T0547 578 :ISN 2vd8A 380 :VEV T0547 603 :NGYLKS 2vd8A 383 :INYLND Number of specific fragments extracted= 42 number of extra gaps= 0 total=16834 Will force an alignment to be made, even if fragment is small Number of alignments=791 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)G5 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)I319 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)H329 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V331 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E338 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)F340 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)K353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 Warning: unaligning (T0547)F460 because last residue in template chain is (2vd8A)I389 T0547 6 :IDI 2vd8A 4 :APF T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 76 :KGGFNAVYP 2vd8A 31 :PSDVEIFAV T0547 88 :NQY 2vd8A 43 :NAY T0547 91 :PGF 2vd8A 50 :VPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2vd8A 62 :TRLAVAFLDEALVLRRAGIT T0547 127 :APITVNGFKDRE 2vd8A 82 :APILVLGPSPPR T0547 141 :NIGF 2vd8A 94 :DINV T0547 146 :AAEMG 2vd8A 98 :AAEND T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :A 2vd8A 120 :W T0547 173 :RFKPK 2vd8A 121 :DGSST T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 202 :SKFGL 2vd8A 137 :GRIGI T0547 207 :T 2vd8A 143 :E T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLL 2vd8A 154 :LEGAPFL T0547 226 :QFTMIHFHLG 2vd8A 161 :ELEGVYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEY 2vd8A 204 :VHTANSAATLR T0547 282 :FKNE 2vd8A 215 :FQGI T0547 286 :KSR 2vd8A 223 :VRI T0547 306 :IAEQKKDLEP 2vd8A 226 :GIAMYGLSPS T0547 316 :DIF 2vd8A 241 :FLP T0547 322 :GRFVAAN 2vd8A 247 :EPALSLH T0547 332 :LIAPVL 2vd8A 257 :AHIKQV T0547 341 :SQEYAENKLI 2vd8A 266 :DGISYNVTYR T0547 354 :QNPKLIDE 2vd8A 279 :EEWIATVA T0547 362 :LYDLY 2vd8A 289 :YADGW T0547 369 :IKPSN 2vd8A 294 :LRRLQ T0547 376 :EYLHD 2vd8A 299 :GFEVL T0547 382 :IDHLESILT 2vd8A 309 :VPIVGRVTM T0547 393 :DLGYVD 2vd8A 318 :DQFMIH T0547 399 :LQDRSNA 2vd8A 325 :PCEVPLG T0547 409 :THLITKKAILLLGDKQN 2vd8A 335 :TLIGRQGDEYISATEVA T0547 426 :PADLLAIQDEVQERYLVNFSLF 2vd8A 355 :GTINYEIITTISFRVPRIFIRN T0547 451 :PDFWGLEQN 2vd8A 380 :VEVINYLND Number of specific fragments extracted= 43 number of extra gaps= 0 total=16877 Will force an alignment to be made, even if fragment is small Number of alignments=792 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)G5 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)I319 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)K353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 Warning: unaligning (T0547)F460 because last residue in template chain is (2vd8A)I389 T0547 32 :ID 2vd8A 4 :AP T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 2vd8A 62 :TRLAVAFLDEALVLRRAGITA T0547 128 :PITVNGFKDRE 2vd8A 83 :PILVLGPSPPR T0547 141 :NIGF 2vd8A 94 :DINV T0547 146 :AAEMG 2vd8A 98 :AAEND T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 202 :SKFGLTS 2vd8A 137 :GRIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLL 2vd8A 154 :LEGAPFL T0547 226 :QFTMIHFHLG 2vd8A 161 :ELEGVYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEY 2vd8A 204 :VHTANSAATLR T0547 282 :FKNE 2vd8A 215 :FQGI T0547 291 :TLREYA 2vd8A 219 :TFNAVR T0547 302 :ILKNIAEQKKDLE 2vd8A 228 :AMYGLSPSVEIRP T0547 316 :DIF 2vd8A 241 :FLP T0547 322 :GRFVA 2vd8A 247 :EPALS T0547 332 :LI 2vd8A 252 :LH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 345 :AENKLI 2vd8A 270 :YNVTYR T0547 354 :QNPKLIDE 2vd8A 279 :EEWIATVA T0547 362 :LYDLYKSIKPSNAL 2vd8A 288 :GYADGWLRRLQGFE T0547 378 :L 2vd8A 305 :N T0547 382 :IDHLESILT 2vd8A 309 :VPIVGRVTM T0547 393 :DLGYVDLQ 2vd8A 318 :DQFMIHLP T0547 401 :DRSNA 2vd8A 327 :EVPLG T0547 409 :THLITKKAILLLGDKQN 2vd8A 335 :TLIGRQGDEYISATEVA T0547 426 :PA 2vd8A 355 :GT T0547 429 :LLAIQDEVQERYLVNFSLF 2vd8A 358 :NYEIITTISFRVPRIFIRN T0547 451 :PDFWGLEQN 2vd8A 380 :VEVINYLND Number of specific fragments extracted= 43 number of extra gaps= 0 total=16920 Will force an alignment to be made, even if fragment is small Number of alignments=793 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)K28 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)I319 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)H329 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V331 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E338 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)F340 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)K353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 Warning: unaligning (T0547)F460 because last residue in template chain is (2vd8A)I389 T0547 29 :PAI 2vd8A 4 :APF T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 2vd8A 62 :TRLAVAFLDEALVLRRAGITA T0547 128 :PITVNGFKDRE 2vd8A 83 :PILVLGPSPPR T0547 141 :NIGF 2vd8A 94 :DINV T0547 146 :AAEMG 2vd8A 98 :AAEND T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :A 2vd8A 120 :W T0547 172 :E 2vd8A 121 :D T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 202 :SKFGLTS 2vd8A 137 :GRIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLL 2vd8A 154 :LEGAPFL T0547 226 :QFTMIHFHLG 2vd8A 161 :ELEGVYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEY 2vd8A 204 :VHTANSAATLR T0547 282 :FKNE 2vd8A 215 :FQGI T0547 287 :SR 2vd8A 223 :VR T0547 291 :TL 2vd8A 225 :IG T0547 307 :AEQKKDLEP 2vd8A 227 :IAMYGLSPS T0547 317 :IF 2vd8A 242 :LP T0547 322 :GRFVAAN 2vd8A 247 :EPALSLH T0547 332 :LIAPVL 2vd8A 257 :AHIKQV T0547 341 :SQEYAENKLI 2vd8A 266 :DGISYNVTYR T0547 354 :QNPKL 2vd8A 279 :EEWIA T0547 369 :IKPSNALE 2vd8A 284 :TVAIGYAD T0547 377 :YL 2vd8A 304 :VN T0547 382 :IDHLESILT 2vd8A 309 :VPIVGRVTM T0547 393 :DLGYVD 2vd8A 318 :DQFMIH T0547 399 :LQDRSNA 2vd8A 325 :PCEVPLG T0547 409 :THLITKKAILLLGDKQN 2vd8A 335 :TLIGRQGDEYISATEVA T0547 426 :PADLLAIQDEVQERYLVNFSLF 2vd8A 355 :GTINYEIITTISFRVPRIFIRN T0547 451 :PDFWGLEQN 2vd8A 380 :VEVINYLND Number of specific fragments extracted= 43 number of extra gaps= 0 total=16963 Will force an alignment to be made, even if fragment is small Number of alignments=794 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)G5 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)K353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)K543 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)Y545 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 T0547 6 :IDI 2vd8A 4 :APF T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 76 :KGGFNAVYP 2vd8A 31 :PSDVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 2vd8A 62 :TRLAVAFLDEALVLRRAGITA T0547 128 :PITVNGFKDRE 2vd8A 83 :PILVLGPSPPR T0547 141 :NIGF 2vd8A 94 :DINV T0547 146 :AAEMG 2vd8A 98 :AAEND T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 188 :S 2vd8A 137 :G T0547 203 :KFGLTS 2vd8A 138 :RIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLL 2vd8A 154 :LEGAPFL T0547 226 :QFTMIHFHLG 2vd8A 161 :ELEGVYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEY 2vd8A 204 :VHTANSAATLR T0547 282 :FKNEKSR 2vd8A 215 :FQGITFN T0547 318 :FIESGRFVAA 2vd8A 222 :AVRIGIAMYG T0547 328 :NHAVLI 2vd8A 248 :PALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 346 :EN 2vd8A 266 :DG T0547 348 :KLI 2vd8A 273 :TYR T0547 354 :QN 2vd8A 279 :EE T0547 356 :PKLIDE 2vd8A 290 :ADGWLR T0547 374 :ALEYL 2vd8A 297 :LQGFE T0547 382 :IDHLESILT 2vd8A 309 :VPIVGRVTM T0547 393 :DLGYVD 2vd8A 318 :DQFMIH T0547 399 :LQDRSNA 2vd8A 325 :PCEVPLG T0547 409 :THL 2vd8A 335 :TLI T0547 412 :ITKKAILLLGD 2vd8A 346 :SATEVAEYSGT T0547 429 :LLAIQDEVQERYL 2vd8A 358 :NYEIITTISFRVP T0547 537 :IISINE 2vd8A 371 :RIFIRN T0547 546 :EVEGII 2vd8A 380 :VEVINY T0547 608 :SIGV 2vd8A 386 :LNDI Number of specific fragments extracted= 44 number of extra gaps= 0 total=17007 Will force an alignment to be made, even if fragment is small Number of alignments=795 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)G5 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)T209 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)I319 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)K353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)K543 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)Y545 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 T0547 6 :IDI 2vd8A 4 :APF T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 76 :KGGFNAVYP 2vd8A 31 :PSDVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGA 2vd8A 62 :TRLAVAFLDEALVLRRAGITAP T0547 129 :ITVNGFKDR 2vd8A 84 :ILVLGPSPP T0547 140 :INIGF 2vd8A 93 :RDINV T0547 146 :AAEMG 2vd8A 98 :AAEND T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 202 :SKFGLTS 2vd8A 137 :GRIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLL 2vd8A 154 :LEGAPFL T0547 226 :QFTMIHFHLG 2vd8A 161 :ELEGVYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEY 2vd8A 204 :VHTANSAATLR T0547 283 :KNEKSRNY 2vd8A 215 :FQGITFNA T0547 307 :AEQKKDLEP 2vd8A 227 :IAMYGLSPS T0547 317 :IF 2vd8A 242 :LP T0547 322 :GRFV 2vd8A 247 :EPAL T0547 331 :VLI 2vd8A 251 :SLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 344 :YAENKLI 2vd8A 269 :SYNVTYR T0547 354 :QN 2vd8A 279 :EE T0547 370 :KPSNALE 2vd8A 285 :VAIGYAD T0547 377 :YL 2vd8A 304 :VN T0547 382 :IDHLESILT 2vd8A 309 :VPIVGRVTM T0547 393 :DLGYVD 2vd8A 318 :DQFMIH T0547 399 :LQDRSNA 2vd8A 325 :PCEVPLG T0547 409 :THLITKKAILLLGDKQN 2vd8A 335 :TLIGRQGDEYISATEVA T0547 426 :P 2vd8A 355 :G T0547 429 :LLAIQ 2vd8A 359 :YEIIT T0547 435 :EV 2vd8A 364 :TI T0547 532 :HPTEAIISINE 2vd8A 366 :SFRVPRIFIRN T0547 546 :EVEGIIE 2vd8A 380 :VEVINYL T0547 609 :IGV 2vd8A 387 :NDI Number of specific fragments extracted= 45 number of extra gaps= 0 total=17052 Will force an alignment to be made, even if fragment is small Number of alignments=796 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)E158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)E164 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I166 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)T209 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 T0547 50 :RFPHLIQKQIEN 2vd8A 14 :VDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFK 2vd8A 62 :TRLAVAFLDEALVLRRAGITAPILVLGPSP T0547 139 :LINIGF 2vd8A 92 :PRDINV T0547 146 :AAEMGHNI 2vd8A 98 :AAENDVAL T0547 155 :LTI 2vd8A 106 :TVF T0547 159 :GLNEL 2vd8A 112 :WVDEA T0547 167 :IDIAKE 2vd8A 120 :WDGSST T0547 183 :RVRLH 2vd8A 129 :HINFD T0547 199 :GINSKFGLTS 2vd8A 134 :SGMGRIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLE 2vd8A 154 :LEGAPFLE T0547 227 :FTMIHFHLGS 2vd8A 162 :LEGVYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :I 2vd8A 204 :V Number of specific fragments extracted= 22 number of extra gaps= 0 total=17074 Will force an alignment to be made, even if fragment is small Number of alignments=797 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)I319 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)H329 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V331 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E338 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)F340 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)K353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 76 :KGGFNAVYP 2vd8A 31 :PSDVEIFAV T0547 88 :NQY 2vd8A 43 :NAY T0547 91 :PGF 2vd8A 50 :VPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2vd8A 62 :TRLAVAFLDEALVLRRAGIT T0547 127 :APITVNGFKDRE 2vd8A 82 :APILVLGPSPPR T0547 141 :NIGF 2vd8A 94 :DINV T0547 146 :AAEMG 2vd8A 98 :AAEND T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :A 2vd8A 120 :W T0547 173 :RFKPK 2vd8A 121 :DGSST T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 202 :SKFGL 2vd8A 137 :GRIGI T0547 207 :T 2vd8A 143 :E T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLL 2vd8A 154 :LEGAPFL T0547 226 :QFTMIHFHLG 2vd8A 161 :ELEGVYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEY 2vd8A 204 :VHTANSAATLR T0547 282 :FKNE 2vd8A 215 :FQGI T0547 286 :KSR 2vd8A 223 :VRI T0547 306 :IAEQKKDLEP 2vd8A 226 :GIAMYGLSPS T0547 316 :DIF 2vd8A 241 :FLP T0547 322 :GRFVAAN 2vd8A 247 :EPALSLH T0547 332 :LIAPVL 2vd8A 257 :AHIKQV T0547 341 :SQEYAENKLI 2vd8A 266 :DGISYNVTYR T0547 354 :QNPKLIDE 2vd8A 279 :EEWIATVA T0547 362 :LYDLY 2vd8A 289 :YADGW T0547 369 :IKPSN 2vd8A 294 :LRRLQ T0547 376 :EYLHD 2vd8A 299 :GFEVL T0547 382 :IDHLESILT 2vd8A 309 :VPIVGRVTM T0547 393 :DLGYVD 2vd8A 318 :DQFMIH T0547 399 :LQDRSNA 2vd8A 325 :PCEVPLG T0547 409 :THLITKKAILLLGDKQN 2vd8A 335 :TLIGRQGDEYISATEVA T0547 426 :PADLLAIQDEVQERYLVNFSLF 2vd8A 355 :GTINYEIITTISFRVPRIFIRN T0547 451 :PDFWGLEQN 2vd8A 380 :VEVINYLND Number of specific fragments extracted= 42 number of extra gaps= 0 total=17116 Will force an alignment to be made, even if fragment is small Number of alignments=798 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)I319 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)K353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 2vd8A 62 :TRLAVAFLDEALVLRRAGITA T0547 128 :PITVNGFKDRE 2vd8A 83 :PILVLGPSPPR T0547 141 :NIGF 2vd8A 94 :DINV T0547 146 :AAEMG 2vd8A 98 :AAEND T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 202 :SKFGLTS 2vd8A 137 :GRIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLL 2vd8A 154 :LEGAPFL T0547 226 :QFTMIHFHLG 2vd8A 161 :ELEGVYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEY 2vd8A 204 :VHTANSAATLR T0547 282 :FKNE 2vd8A 215 :FQGI T0547 291 :TLREYA 2vd8A 219 :TFNAVR T0547 302 :ILKNIAEQKKDLE 2vd8A 228 :AMYGLSPSVEIRP T0547 316 :DIF 2vd8A 241 :FLP T0547 322 :GRFVA 2vd8A 247 :EPALS T0547 332 :LI 2vd8A 252 :LH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 345 :AENKLI 2vd8A 270 :YNVTYR T0547 354 :QNPKLIDE 2vd8A 279 :EEWIATVA T0547 362 :LYDLYKSIKPSNAL 2vd8A 288 :GYADGWLRRLQGFE T0547 378 :L 2vd8A 305 :N T0547 382 :IDHLESILT 2vd8A 309 :VPIVGRVTM T0547 393 :DLGYVDLQ 2vd8A 318 :DQFMIHLP T0547 401 :DRSNA 2vd8A 327 :EVPLG T0547 409 :THLITKKAILLLGDKQN 2vd8A 335 :TLIGRQGDEYISATEVA T0547 426 :PA 2vd8A 355 :GT T0547 429 :LLAIQDEVQERYLVNFSLF 2vd8A 358 :NYEIITTISFRVPRIFIRN T0547 451 :PDFWGLEQN 2vd8A 380 :VEVINYLND Number of specific fragments extracted= 42 number of extra gaps= 0 total=17158 Will force an alignment to be made, even if fragment is small Number of alignments=799 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)I319 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)H329 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V331 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E338 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)F340 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)K353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 2vd8A 62 :TRLAVAFLDEALVLRRAGITA T0547 128 :PITVNGFKDRE 2vd8A 83 :PILVLGPSPPR T0547 141 :NIGF 2vd8A 94 :DINV T0547 146 :AAEMG 2vd8A 98 :AAEND T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :A 2vd8A 120 :W T0547 172 :E 2vd8A 121 :D T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 202 :SKFGLTS 2vd8A 137 :GRIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLL 2vd8A 154 :LEGAPFL T0547 226 :QFTMIHFHLG 2vd8A 161 :ELEGVYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEY 2vd8A 204 :VHTANSAATLR T0547 282 :FKNE 2vd8A 215 :FQGI T0547 287 :SR 2vd8A 223 :VR T0547 291 :TL 2vd8A 225 :IG T0547 307 :AEQKKDLEP 2vd8A 227 :IAMYGLSPS T0547 317 :IF 2vd8A 242 :LP T0547 322 :GRFVAAN 2vd8A 247 :EPALSLH T0547 332 :LIAPVL 2vd8A 257 :AHIKQV T0547 341 :SQEYAENKLI 2vd8A 266 :DGISYNVTYR T0547 354 :QNPKL 2vd8A 279 :EEWIA T0547 369 :IKPSNALE 2vd8A 284 :TVAIGYAD T0547 377 :YL 2vd8A 304 :VN T0547 382 :IDHLESILT 2vd8A 309 :VPIVGRVTM T0547 393 :DLGYVD 2vd8A 318 :DQFMIH T0547 399 :LQDRSNA 2vd8A 325 :PCEVPLG T0547 409 :THLITKKAILLLGDKQN 2vd8A 335 :TLIGRQGDEYISATEVA T0547 426 :PADLLAIQDEVQERYLVNFSLF 2vd8A 355 :GTINYEIITTISFRVPRIFIRN T0547 451 :PDFWGLEQN 2vd8A 380 :VEVINYLND Number of specific fragments extracted= 42 number of extra gaps= 0 total=17200 Will force an alignment to be made, even if fragment is small Number of alignments=800 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)K353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 76 :KGGFNAVYP 2vd8A 31 :PSDVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 2vd8A 62 :TRLAVAFLDEALVLRRAGITA T0547 128 :PITVNGFKDRE 2vd8A 83 :PILVLGPSPPR T0547 141 :NIGF 2vd8A 94 :DINV T0547 146 :AAEMG 2vd8A 98 :AAEND T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 188 :S 2vd8A 137 :G T0547 203 :KFGLTS 2vd8A 138 :RIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLL 2vd8A 154 :LEGAPFL T0547 226 :QFTMIHFHLG 2vd8A 161 :ELEGVYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEY 2vd8A 204 :VHTANSAATLR T0547 282 :FKNEKSR 2vd8A 215 :FQGITFN T0547 318 :FIESGRFVAA 2vd8A 222 :AVRIGIAMYG T0547 328 :NHAVLI 2vd8A 248 :PALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 346 :EN 2vd8A 266 :DG T0547 348 :KLI 2vd8A 273 :TYR T0547 354 :QN 2vd8A 279 :EE T0547 356 :PKLIDE 2vd8A 290 :ADGWLR T0547 374 :ALEYL 2vd8A 297 :LQGFE T0547 382 :IDHLESILT 2vd8A 309 :VPIVGRVTM T0547 393 :DLGYVD 2vd8A 318 :DQFMIH T0547 399 :LQDRSNA 2vd8A 325 :PCEVPLG T0547 409 :THLITKKAILLLGDKQN 2vd8A 335 :TLIGRQGDEYISATEVA T0547 426 :PADLLAIQ 2vd8A 355 :GTINYEII Number of specific fragments extracted= 39 number of extra gaps= 0 total=17239 Will force an alignment to be made, even if fragment is small Number of alignments=801 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)T209 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)I319 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)K353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)K543 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)Y545 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 76 :KGGFNAVYP 2vd8A 31 :PSDVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGA 2vd8A 62 :TRLAVAFLDEALVLRRAGITAP T0547 129 :ITVNGFKDR 2vd8A 84 :ILVLGPSPP T0547 140 :INIGF 2vd8A 93 :RDINV T0547 146 :AAEMG 2vd8A 98 :AAEND T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 202 :SKFGLTS 2vd8A 137 :GRIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLL 2vd8A 154 :LEGAPFL T0547 226 :QFTMIHFHLG 2vd8A 161 :ELEGVYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEY 2vd8A 204 :VHTANSAATLR T0547 283 :KNEKSRNY 2vd8A 215 :FQGITFNA T0547 307 :AEQKKDLEP 2vd8A 227 :IAMYGLSPS T0547 317 :IF 2vd8A 242 :LP T0547 322 :GRFV 2vd8A 247 :EPAL T0547 331 :VLI 2vd8A 251 :SLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 344 :YAENKLI 2vd8A 269 :SYNVTYR T0547 354 :QN 2vd8A 279 :EE T0547 370 :KPSNALE 2vd8A 285 :VAIGYAD T0547 377 :YL 2vd8A 304 :VN T0547 382 :IDHLESILT 2vd8A 309 :VPIVGRVTM T0547 393 :DLGYVD 2vd8A 318 :DQFMIH T0547 399 :LQDRSNA 2vd8A 325 :PCEVPLG T0547 409 :THLITKKAILLLGDKQN 2vd8A 335 :TLIGRQGDEYISATEVA T0547 426 :P 2vd8A 355 :G T0547 429 :LLAIQDE 2vd8A 359 :YEIITTI T0547 532 :HPTEAIISINE 2vd8A 366 :SFRVPRIFIRN T0547 546 :EVEG 2vd8A 380 :VEVI Number of specific fragments extracted= 42 number of extra gaps= 0 total=17281 Will force an alignment to be made, even if fragment is small Number of alignments=802 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I31 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)E158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)L160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I166 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)D168 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)I317 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)I319 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)L349 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)E361 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)Y363 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)N575 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)R577 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 Warning: unaligning (T0547)I609 because last residue in template chain is (2vd8A)I389 T0547 32 :IDIVKE 2vd8A 4 :APFYRD T0547 47 :LLL 2vd8A 10 :TWV T0547 50 :RFPHLIQKQIEN 2vd8A 14 :VDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :NQYPG 2vd8A 43 :NAYGH T0547 93 :F 2vd8A 52 :V T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2vd8A 62 :TRLAVAFLDEALVLRRAGITAPILVL T0547 133 :GFKDRELINIGF 2vd8A 88 :GPSPPRDINVAA T0547 148 :EMGHNIT 2vd8A 100 :ENDVALT T0547 156 :TI 2vd8A 107 :VF T0547 161 :NELEA 2vd8A 112 :WVDEA T0547 169 :IAKE 2vd8A 120 :WDGS T0547 178 :PN 2vd8A 124 :ST T0547 183 :RVRLHSAGV 2vd8A 129 :HINFDSGMG T0547 203 :KFGLTS 2vd8A 138 :RIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLEQFT 2vd8A 154 :LEGAPFLELEG T0547 230 :IHFHLGS 2vd8A 165 :VYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLG 2vd8A 204 :VHTA T0547 281 :QFKNEK 2vd8A 208 :NSAATL T0547 291 :TLREY 2vd8A 214 :RFQGI T0547 296 :ANDVVFILKNI 2vd8A 220 :FNAVRIGIAMY T0547 307 :AEQKKD 2vd8A 233 :SPSVEI T0547 313 :LEPD 2vd8A 240 :PFLP T0547 320 :ES 2vd8A 247 :EP T0547 329 :HAVLI 2vd8A 249 :ALSLH T0547 337 :LELFS 2vd8A 257 :AHIKQ T0547 348 :K 2vd8A 262 :V T0547 352 :KK 2vd8A 266 :DG T0547 354 :QNPKLID 2vd8A 269 :SYNVTYR T0547 364 :DLYKSIKPSNALE 2vd8A 279 :EEWIATVAIGYAD T0547 379 :HDSIDHLE 2vd8A 309 :VPIVGRVT T0547 389 :LTLFDL 2vd8A 317 :MDQFMI T0547 398 :DLQ 2vd8A 323 :HLP T0547 401 :DRSNA 2vd8A 327 :EVPLG T0547 409 :TH 2vd8A 335 :TL T0547 436 :VQERYLVNFSLFQ 2vd8A 337 :IGRQGDEYISATE T0547 548 :EGIIEAQSILDTLEDLDYDIHAIMDIL 2vd8A 350 :VAEYSGTINYEIITTISFRVPRIFIRN T0547 578 :ISNSK 2vd8A 380 :VEVIN T0547 605 :YLKS 2vd8A 385 :YLND Number of specific fragments extracted= 46 number of extra gaps= 0 total=17327 Will force an alignment to be made, even if fragment is small Number of alignments=803 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)K44 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)A326 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 Warning: unaligning (T0547)F460 because last residue in template chain is (2vd8A)I389 T0547 45 :GPL 2vd8A 4 :APF T0547 48 :LLRFPHLIQKQIEN 2vd8A 12 :VEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 77 :G 2vd8A 31 :P T0547 78 :GFNAVYP 2vd8A 33 :DVEIFAV T0547 88 :NQY 2vd8A 43 :NAY T0547 91 :PGF 2vd8A 50 :VPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2vd8A 62 :TRLAVAFLDEALVLRRAGIT T0547 127 :APITVNGFKDRELINIGF 2vd8A 82 :APILVLGPSPPRDINVAA T0547 148 :EMG 2vd8A 100 :END T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AKE 2vd8A 120 :WDG T0547 174 :FK 2vd8A 123 :SS T0547 177 :K 2vd8A 125 :T T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 190 :GV 2vd8A 136 :MG T0547 203 :KFGL 2vd8A 138 :RIGI T0547 207 :T 2vd8A 143 :E T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLEQFT 2vd8A 154 :LEGAPFLELEG T0547 230 :IHFHLG 2vd8A 165 :VYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYSQFKNEKSRNYT 2vd8A 204 :VHTANSAATLRFQGITFNAVRIG T0547 307 :AEQKKDLEP 2vd8A 227 :IAMYGLSPS T0547 318 :FIE 2vd8A 241 :FLP T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 345 :AENKLILKK 2vd8A 279 :EEWIATVAI T0547 354 :QNPKLIDELYD 2vd8A 289 :YADGWLRRLQG T0547 368 :SIKPSN 2vd8A 300 :FEVLVN T0547 379 :HDSIDHLE 2vd8A 309 :VPIVGRVT T0547 389 :LTLFDLGYV 2vd8A 317 :MDQFMIHLP T0547 400 :QDRSNA 2vd8A 326 :CEVPLG T0547 409 :THLITKKAILLL 2vd8A 335 :TLIGRQGDEYIS T0547 423 :KQNPADLLAIQDEVQERYLVNFSLF 2vd8A 352 :EYSGTINYEIITTISFRVPRIFIRN T0547 451 :PDFWGLEQN 2vd8A 380 :VEVINYLND Number of specific fragments extracted= 41 number of extra gaps= 0 total=17368 Will force an alignment to be made, even if fragment is small Number of alignments=804 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)D40 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)A326 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)L358 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)D360 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 Warning: unaligning (T0547)F460 because last residue in template chain is (2vd8A)I389 T0547 41 :DGYKGP 2vd8A 4 :APFYRD T0547 47 :LLLRFPHLIQKQIEN 2vd8A 11 :WVEVDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :NQY 2vd8A 43 :NAY T0547 91 :PGF 2vd8A 50 :VPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2vd8A 62 :TRLAVAFLDEALVLRRAGIT T0547 127 :APITVNGFKDRELINIGF 2vd8A 82 :APILVLGPSPPRDINVAA T0547 150 :GHNITLTIE 2vd8A 100 :ENDVALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AKE 2vd8A 120 :WDG T0547 174 :FK 2vd8A 123 :SS T0547 177 :K 2vd8A 125 :T T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 190 :GV 2vd8A 136 :MG T0547 203 :KFGL 2vd8A 138 :RIGI T0547 207 :T 2vd8A 143 :E T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLEQFT 2vd8A 154 :LEGAPFLELEG T0547 230 :IHFHLG 2vd8A 165 :VYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYSQFK 2vd8A 204 :VHTANSAATLRFQGI T0547 291 :T 2vd8A 219 :T T0547 296 :ANDV 2vd8A 220 :FNAV T0547 300 :VFILKNIAE 2vd8A 226 :GIAMYGLSP T0547 312 :DLEPDIFIE 2vd8A 235 :SVEIRPFLP T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 346 :E 2vd8A 266 :D T0547 350 :ILKK 2vd8A 267 :GISY T0547 354 :QNPK 2vd8A 272 :VTYR T0547 361 :ELYDLYKSI 2vd8A 279 :EEWIATVAI T0547 379 :HDSIDHLE 2vd8A 309 :VPIVGRVT T0547 389 :LTLFDLGY 2vd8A 317 :MDQFMIHL T0547 399 :LQDRSNA 2vd8A 325 :PCEVPLG T0547 409 :THLITKKAILLL 2vd8A 335 :TLIGRQGDEYIS T0547 423 :KQNPADLLAIQDEVQERYLVNFSLF 2vd8A 352 :EYSGTINYEIITTISFRVPRIFIRN T0547 451 :PDFWGLEQN 2vd8A 380 :VEVINYLND Number of specific fragments extracted= 42 number of extra gaps= 0 total=17410 Will force an alignment to be made, even if fragment is small Number of alignments=805 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)K44 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)A326 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)L358 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)D360 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 Warning: unaligning (T0547)F460 because last residue in template chain is (2vd8A)I389 T0547 45 :GP 2vd8A 4 :AP T0547 47 :LLLRFPHLIQKQIEN 2vd8A 11 :WVEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 77 :G 2vd8A 31 :P T0547 78 :GFNAVYP 2vd8A 33 :DVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2vd8A 62 :TRLAVAFLDEALVLRRAGIT T0547 127 :APITVNGFKDRELINIGF 2vd8A 82 :APILVLGPSPPRDINVAA T0547 148 :EMGH 2vd8A 100 :ENDV T0547 154 :TLTIE 2vd8A 104 :ALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AKE 2vd8A 120 :WDG T0547 174 :FK 2vd8A 123 :SS T0547 177 :K 2vd8A 125 :T T0547 181 :GLRVRLHS 2vd8A 129 :HINFDSGM T0547 202 :SKFGL 2vd8A 137 :GRIGI T0547 207 :T 2vd8A 143 :E T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLEQFT 2vd8A 154 :LEGAPFLELEG T0547 230 :IHFHLGS 2vd8A 165 :VYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYSQFKNEKSRN 2vd8A 204 :VHTANSAATLRFQGITFNAVR T0547 291 :TLR 2vd8A 225 :IGI T0547 308 :EQKKD 2vd8A 228 :AMYGL T0547 313 :LEPDIFIE 2vd8A 236 :VEIRPFLP T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 349 :LILKK 2vd8A 266 :DGISY T0547 354 :QNPK 2vd8A 272 :VTYR T0547 361 :EL 2vd8A 279 :EE T0547 366 :YKSIKPSNALE 2vd8A 281 :WIATVAIGYAD T0547 379 :HDSIDHLE 2vd8A 309 :VPIVGRVT T0547 389 :LTLFDLGY 2vd8A 317 :MDQFMIHL T0547 399 :LQDRSNA 2vd8A 325 :PCEVPLG T0547 409 :THLITKKAILLL 2vd8A 335 :TLIGRQGDEYIS T0547 423 :KQNPADLLAIQDEVQERYLVNFSLF 2vd8A 352 :EYSGTINYEIITTISFRVPRIFIRN T0547 451 :PDFWGLEQN 2vd8A 380 :VEVINYLND Number of specific fragments extracted= 42 number of extra gaps= 0 total=17452 Will force an alignment to be made, even if fragment is small Number of alignments=806 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)G5 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 Warning: unaligning (T0547)F460 because last residue in template chain is (2vd8A)I389 T0547 6 :IDI 2vd8A 4 :APF T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :NQ 2vd8A 43 :NA T0547 90 :YPGF 2vd8A 49 :YVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2vd8A 62 :TRLAVAFLDEALVLRRAGIT T0547 127 :APITVNGFKDRELINIGF 2vd8A 82 :APILVLGPSPPRDINVAA T0547 148 :EMG 2vd8A 100 :END T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 190 :GV 2vd8A 136 :MG T0547 203 :KFGL 2vd8A 138 :RIGI T0547 207 :T 2vd8A 143 :E T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLEQFT 2vd8A 154 :LEGAPFLELEG T0547 230 :IHFHLG 2vd8A 165 :VYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYSQFKNEK 2vd8A 204 :VHTANSAATLRFQGITFN T0547 318 :FIESGRFVAA 2vd8A 222 :AVRIGIAMYG T0547 328 :NHAVLI 2vd8A 248 :PALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 345 :AENKLILKK 2vd8A 279 :EEWIATVAI T0547 354 :QNPKLIDELYD 2vd8A 289 :YADGWLRRLQG T0547 375 :LE 2vd8A 300 :FE T0547 379 :HDSIDHLES 2vd8A 309 :VPIVGRVTM T0547 395 :GYV 2vd8A 318 :DQF T0547 400 :QDRSNA 2vd8A 326 :CEVPLG T0547 409 :THLI 2vd8A 335 :TLIG T0547 413 :TKKAILLL 2vd8A 347 :ATEVAEYS T0547 426 :PADLLAIQDEVQERYLVNFSLF 2vd8A 355 :GTINYEIITTISFRVPRIFIRN T0547 451 :PDFWGLEQN 2vd8A 380 :VEVINYLND Number of specific fragments extracted= 39 number of extra gaps= 0 total=17491 Will force an alignment to be made, even if fragment is small Number of alignments=807 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)G5 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)A326 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 Warning: unaligning (T0547)F460 because last residue in template chain is (2vd8A)I389 T0547 6 :IDI 2vd8A 4 :APF T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 77 :G 2vd8A 31 :P T0547 78 :GFNAVYP 2vd8A 33 :DVEIFAV T0547 88 :NQY 2vd8A 43 :NAY T0547 91 :PGF 2vd8A 50 :VPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2vd8A 62 :TRLAVAFLDEALVLRRAGIT T0547 127 :APITVNGFKDRELINIGF 2vd8A 82 :APILVLGPSPPRDINVAA T0547 148 :EMG 2vd8A 100 :END T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AKE 2vd8A 120 :WDG T0547 174 :FK 2vd8A 123 :SS T0547 177 :K 2vd8A 125 :T T0547 181 :GLRV 2vd8A 129 :HINF T0547 187 :HSAGV 2vd8A 133 :DSGMG T0547 203 :KFGL 2vd8A 138 :RIGI T0547 207 :T 2vd8A 143 :E T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLEQFT 2vd8A 154 :LEGAPFLELEG T0547 230 :IHFHLGS 2vd8A 165 :VYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYSQFKNEK 2vd8A 204 :VHTANSAATLRFQGITFN T0547 308 :EQKK 2vd8A 228 :AMYG T0547 312 :DLEPDIFIE 2vd8A 235 :SVEIRPFLP T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 345 :AENKLILKK 2vd8A 279 :EEWIATVAI T0547 354 :QNPKLIDEL 2vd8A 289 :YADGWLRRL T0547 373 :NALE 2vd8A 298 :QGFE T0547 379 :HDSIDHLE 2vd8A 309 :VPIVGRVT T0547 389 :LTLFDLGY 2vd8A 317 :MDQFMIHL T0547 399 :LQDRSNA 2vd8A 325 :PCEVPLG T0547 409 :THLITKKAILLL 2vd8A 335 :TLIGRQGDEYIS T0547 425 :NPADLLAIQDEVQERYLVNFSLF 2vd8A 354 :SGTINYEIITTISFRVPRIFIRN T0547 451 :PDFWGLEQN 2vd8A 380 :VEVINYLND Number of specific fragments extracted= 41 number of extra gaps= 0 total=17532 Will force an alignment to be made, even if fragment is small Number of alignments=808 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)E158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)L160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I166 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)D168 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)I317 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)I319 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)L349 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)E361 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)Y363 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)N575 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 T0547 50 :RFPHLIQKQIEN 2vd8A 14 :VDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :NQYPG 2vd8A 43 :NAYGH T0547 93 :F 2vd8A 52 :V T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2vd8A 62 :TRLAVAFLDEALVLRRAGITAPILVL T0547 133 :GFKDRELINIGF 2vd8A 88 :GPSPPRDINVAA T0547 148 :EMGHNIT 2vd8A 100 :ENDVALT T0547 156 :TI 2vd8A 107 :VF T0547 161 :NELEA 2vd8A 112 :WVDEA T0547 169 :IAKE 2vd8A 120 :WDGS T0547 178 :PN 2vd8A 124 :ST T0547 183 :RVRLHSAGV 2vd8A 129 :HINFDSGMG T0547 203 :KFGLTS 2vd8A 138 :RIGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLEQFT 2vd8A 154 :LEGAPFLELEG T0547 230 :IHFHLGS 2vd8A 165 :VYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLG 2vd8A 204 :VHTA T0547 281 :QFKNEK 2vd8A 208 :NSAATL T0547 291 :TLREY 2vd8A 214 :RFQGI T0547 296 :ANDVVFILKNI 2vd8A 220 :FNAVRIGIAMY T0547 307 :AEQKKD 2vd8A 233 :SPSVEI T0547 313 :LEPD 2vd8A 240 :PFLP T0547 320 :ES 2vd8A 247 :EP T0547 329 :HAVLI 2vd8A 249 :ALSLH T0547 337 :LELFS 2vd8A 257 :AHIKQ T0547 348 :K 2vd8A 262 :V T0547 352 :KK 2vd8A 266 :DG T0547 354 :QNPKLID 2vd8A 269 :SYNVTYR T0547 364 :DLYKSIKPSNALE 2vd8A 279 :EEWIATVAIGYAD T0547 379 :HDSIDHLE 2vd8A 309 :VPIVGRVT T0547 389 :LTLFDL 2vd8A 317 :MDQFMI T0547 398 :DLQ 2vd8A 323 :HLP T0547 401 :DRSNA 2vd8A 327 :EVPLG T0547 409 :THLIT 2vd8A 335 :TLIGR T0547 439 :RYLVNFSLFQ 2vd8A 340 :QGDEYISATE T0547 548 :EGIIEAQSILDTLEDLDYDIHAIMDIL 2vd8A 350 :VAEYSGTINYEIITTISFRVPRIFIRN Number of specific fragments extracted= 42 number of extra gaps= 0 total=17574 Will force an alignment to be made, even if fragment is small Number of alignments=809 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)K44 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)A326 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 T0547 45 :GPL 2vd8A 4 :APF T0547 48 :LLRFPHLIQKQIEN 2vd8A 12 :VEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 77 :G 2vd8A 31 :P T0547 78 :GFNAVYP 2vd8A 33 :DVEIFAV T0547 88 :NQY 2vd8A 43 :NAY T0547 91 :PGF 2vd8A 50 :VPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2vd8A 62 :TRLAVAFLDEALVLRRAGIT T0547 127 :APITVNGFKDRELINIGF 2vd8A 82 :APILVLGPSPPRDINVAA T0547 148 :EMG 2vd8A 100 :END T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AKE 2vd8A 120 :WDG T0547 174 :FK 2vd8A 123 :SS T0547 177 :K 2vd8A 125 :T T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 190 :GV 2vd8A 136 :MG T0547 203 :KFGL 2vd8A 138 :RIGI T0547 207 :T 2vd8A 143 :E T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLEQFT 2vd8A 154 :LEGAPFLELEG T0547 230 :IHFHLG 2vd8A 165 :VYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYSQFKNEKSRNYT 2vd8A 204 :VHTANSAATLRFQGITFNAVRIG T0547 307 :AEQKKDLEP 2vd8A 227 :IAMYGLSPS T0547 318 :FIE 2vd8A 241 :FLP T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 345 :AENKLILKK 2vd8A 279 :EEWIATVAI T0547 354 :QNPKLIDELYD 2vd8A 289 :YADGWLRRLQG T0547 368 :SIKPSN 2vd8A 300 :FEVLVN T0547 379 :HDSIDHLE 2vd8A 309 :VPIVGRVT T0547 389 :LTLFDLGYV 2vd8A 317 :MDQFMIHLP T0547 400 :QDRSNA 2vd8A 326 :CEVPLG T0547 409 :THLITKKAILLL 2vd8A 335 :TLIGRQGDEYIS T0547 423 :KQNPADLLAIQDEVQERYLVNFSLF 2vd8A 352 :EYSGTINYEIITTISFRVPRIFIRN T0547 451 :PDFWG 2vd8A 380 :VEVIN Number of specific fragments extracted= 41 number of extra gaps= 0 total=17615 Will force an alignment to be made, even if fragment is small Number of alignments=810 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)A326 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)L358 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)D360 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 T0547 42 :GYKGP 2vd8A 5 :PFYRD T0547 47 :LLLRFPHLIQKQIEN 2vd8A 11 :WVEVDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :NQY 2vd8A 43 :NAY T0547 91 :PGF 2vd8A 50 :VPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2vd8A 62 :TRLAVAFLDEALVLRRAGIT T0547 127 :APITVNGFKDRELINIGF 2vd8A 82 :APILVLGPSPPRDINVAA T0547 150 :GHNITLTIE 2vd8A 100 :ENDVALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AKE 2vd8A 120 :WDG T0547 174 :FK 2vd8A 123 :SS T0547 177 :K 2vd8A 125 :T T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 190 :GV 2vd8A 136 :MG T0547 203 :KFGL 2vd8A 138 :RIGI T0547 207 :T 2vd8A 143 :E T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLEQFT 2vd8A 154 :LEGAPFLELEG T0547 230 :IHFHLG 2vd8A 165 :VYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYSQFK 2vd8A 204 :VHTANSAATLRFQGI T0547 291 :T 2vd8A 219 :T T0547 296 :ANDV 2vd8A 220 :FNAV T0547 300 :VFILKNIAE 2vd8A 226 :GIAMYGLSP T0547 312 :DLEPDIFIE 2vd8A 235 :SVEIRPFLP T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 346 :E 2vd8A 266 :D T0547 350 :ILKK 2vd8A 267 :GISY T0547 354 :QNPK 2vd8A 272 :VTYR T0547 361 :ELYDLYKSI 2vd8A 279 :EEWIATVAI T0547 379 :HDSIDHLE 2vd8A 309 :VPIVGRVT T0547 389 :LTLFDLGY 2vd8A 317 :MDQFMIHL T0547 399 :LQDRSNA 2vd8A 325 :PCEVPLG T0547 409 :THLITKKAILLL 2vd8A 335 :TLIGRQGDEYIS T0547 423 :KQNPADLLAIQDEVQERYLVNFSLF 2vd8A 352 :EYSGTINYEIITTISFRVPRIFIRN T0547 451 :PDFWGLE 2vd8A 380 :VEVINYL Number of specific fragments extracted= 42 number of extra gaps= 0 total=17657 Will force an alignment to be made, even if fragment is small Number of alignments=811 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)A326 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)L358 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)D360 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 T0547 45 :GPLLLRFPHLIQKQIEN 2vd8A 9 :DTWVEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 77 :G 2vd8A 31 :P T0547 78 :GFNAVYP 2vd8A 33 :DVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2vd8A 62 :TRLAVAFLDEALVLRRAGIT T0547 127 :APITVNGFKDRELINIGF 2vd8A 82 :APILVLGPSPPRDINVAA T0547 148 :EMGH 2vd8A 100 :ENDV T0547 154 :TLTIE 2vd8A 104 :ALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AKE 2vd8A 120 :WDG T0547 174 :FK 2vd8A 123 :SS T0547 177 :K 2vd8A 125 :T T0547 181 :GLRVRLHS 2vd8A 129 :HINFDSGM T0547 202 :SKFGL 2vd8A 137 :GRIGI T0547 207 :T 2vd8A 143 :E T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLEQFT 2vd8A 154 :LEGAPFLELEG T0547 230 :IHFHLGS 2vd8A 165 :VYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYSQFKNEKSRN 2vd8A 204 :VHTANSAATLRFQGITFNAVR T0547 291 :TLR 2vd8A 225 :IGI T0547 308 :EQKKD 2vd8A 228 :AMYGL T0547 313 :LEPDIFIE 2vd8A 236 :VEIRPFLP T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 349 :LILKK 2vd8A 266 :DGISY T0547 354 :QNPK 2vd8A 272 :VTYR T0547 361 :EL 2vd8A 279 :EE T0547 366 :YKSIKPSNALE 2vd8A 281 :WIATVAIGYAD T0547 379 :HDSIDHLE 2vd8A 309 :VPIVGRVT T0547 389 :LTLFDLGY 2vd8A 317 :MDQFMIHL T0547 399 :LQDRSNA 2vd8A 325 :PCEVPLG T0547 409 :THLITKKAILL 2vd8A 335 :TLIGRQGDEYI T0547 555 :SILDTLEDLDYDIHAIMD 2vd8A 346 :SATEVAEYSGTINYEIIT Number of specific fragments extracted= 40 number of extra gaps= 0 total=17697 Will force an alignment to be made, even if fragment is small Number of alignments=812 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)M450 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :NQ 2vd8A 43 :NA T0547 90 :YPGF 2vd8A 49 :YVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2vd8A 62 :TRLAVAFLDEALVLRRAGIT T0547 127 :APITVNGFKDRELINIGF 2vd8A 82 :APILVLGPSPPRDINVAA T0547 148 :EMG 2vd8A 100 :END T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLH 2vd8A 129 :HINFDSG T0547 190 :GV 2vd8A 136 :MG T0547 203 :KFGL 2vd8A 138 :RIGI T0547 207 :T 2vd8A 143 :E T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLEQFT 2vd8A 154 :LEGAPFLELEG T0547 230 :IHFHLG 2vd8A 165 :VYTHFA T0547 236 :SQITEIHPL 2vd8A 172 :ADEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYSQFKNEK 2vd8A 204 :VHTANSAATLRFQGITFN T0547 318 :FIESGRFVAA 2vd8A 222 :AVRIGIAMYG T0547 328 :NHAVLI 2vd8A 248 :PALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 345 :AENKLILKK 2vd8A 279 :EEWIATVAI T0547 354 :QNPKLIDELYD 2vd8A 289 :YADGWLRRLQG T0547 375 :LE 2vd8A 300 :FE T0547 379 :HDSIDHLES 2vd8A 309 :VPIVGRVTM T0547 395 :GYV 2vd8A 318 :DQF T0547 400 :QDRSNA 2vd8A 326 :CEVPLG T0547 409 :THLI 2vd8A 335 :TLIG T0547 413 :TKKAILLL 2vd8A 347 :ATEVAEYS T0547 426 :PADLLAIQDEVQERYLVNFSLF 2vd8A 355 :GTINYEIITTISFRVPRIFIRN T0547 451 :PDFWGLEQ 2vd8A 380 :VEVINYLN Number of specific fragments extracted= 38 number of extra gaps= 0 total=17735 Will force an alignment to be made, even if fragment is small Number of alignments=813 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)S321 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)A326 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)K543 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)Y545 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 77 :G 2vd8A 31 :P T0547 78 :GFNAVYP 2vd8A 33 :DVEIFAV T0547 88 :NQY 2vd8A 43 :NAY T0547 91 :PGF 2vd8A 50 :VPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNE 2vd8A 62 :TRLAVAFLDEALVLRRAGIT T0547 127 :APITVNGFKDRELINIGF 2vd8A 82 :APILVLGPSPPRDINVAA T0547 148 :EMG 2vd8A 100 :END T0547 153 :ITLTIE 2vd8A 103 :VALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AKE 2vd8A 120 :WDG T0547 174 :FK 2vd8A 123 :SS T0547 177 :K 2vd8A 125 :T T0547 181 :GLRV 2vd8A 129 :HINF T0547 187 :HSAGV 2vd8A 133 :DSGMG T0547 203 :KFGL 2vd8A 138 :RIGI T0547 207 :T 2vd8A 143 :E T0547 214 :A 2vd8A 150 :F T0547 218 :LKENKLLEQFT 2vd8A 154 :LEGAPFLELEG T0547 230 :IHFHLGS 2vd8A 165 :VYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :MGA 2vd8A 197 :FGV T0547 265 :N 2vd8A 200 :D T0547 269 :INLGGGLAVEYSQFKNEK 2vd8A 204 :VHTANSAATLRFQGITFN T0547 308 :EQKK 2vd8A 228 :AMYG T0547 312 :DLEPDIFIE 2vd8A 235 :SVEIRPFLP T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 345 :AENKLILKK 2vd8A 279 :EEWIATVAI T0547 354 :QNPKLIDEL 2vd8A 289 :YADGWLRRL T0547 373 :NALE 2vd8A 298 :QGFE T0547 379 :HDSIDHLE 2vd8A 309 :VPIVGRVT T0547 389 :LTLFDLGY 2vd8A 317 :MDQFMIHL T0547 399 :LQDRSNA 2vd8A 325 :PCEVPLG T0547 409 :THLITKKAILL 2vd8A 335 :TLIGRQGDEYI T0547 429 :LLAIQDEVQERYL 2vd8A 346 :SATEVAEYSGTIN T0547 451 :PDF 2vd8A 359 :YEI T0547 456 :LE 2vd8A 362 :IT T0547 530 :FTHPTEAIISINE 2vd8A 364 :TISFRVPRIFIRN T0547 546 :EVE 2vd8A 380 :VEV Number of specific fragments extracted= 43 number of extra gaps= 0 total=17778 Will force an alignment to be made, even if fragment is small Number of alignments=814 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)R39 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)T156 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)E158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)E164 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I166 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)I369 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)P371 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)T390 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)F392 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)S403 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)A405 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)E438 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)L441 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)P533 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)E535 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)N575 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)R577 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 Warning: unaligning (T0547)K587 because last residue in template chain is (2vd8A)I389 T0547 40 :DDGYKGPLLLRFPHLIQKQIEN 2vd8A 4 :APFYRDTWVEVDLDAIYNNVTH T0547 65 :NFNK 2vd8A 29 :FIPS T0547 78 :GFNAVYP 2vd8A 33 :DVEIFAV T0547 88 :NQY 2vd8A 43 :NAY T0547 91 :PGF 2vd8A 50 :VPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2vd8A 62 :TRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALT T0547 154 :TL 2vd8A 107 :VF T0547 159 :GLNEL 2vd8A 112 :WVDEA T0547 167 :IDIAKE 2vd8A 120 :WDGSST T0547 183 :RVRLHSAGVG 2vd8A 129 :HINFDSGMGR T0547 204 :FGLTS 2vd8A 139 :IGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENK 2vd8A 154 :LEGAP T0547 224 :LEQFTMIHFHLGS 2vd8A 159 :FLELEGVYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :M 2vd8A 197 :F T0547 263 :AKN 2vd8A 198 :GVD T0547 269 :IN 2vd8A 204 :VH T0547 279 :YSQFKNEKSR 2vd8A 206 :TANSAATLRF T0547 343 :EY 2vd8A 216 :QG T0547 345 :AENKLILKKQNPKLIDELYDLYKS 2vd8A 220 :FNAVRIGIAMYGLSPSVEIRPFLP T0547 372 :SNALEYL 2vd8A 247 :EPALSLH T0547 382 :IDHLE 2vd8A 257 :AHIKQ T0547 389 :L 2vd8A 262 :V T0547 393 :DLGYVDLQDR 2vd8A 266 :DGISYNVTYR T0547 406 :EILTHLITKKAIL 2vd8A 279 :EEWIATVAIGYAD T0547 424 :QNPADLLAIQDEVQ 2vd8A 292 :GWLRRLQGFEVLVN T0547 442 :VNFSLFQSMPDFW 2vd8A 309 :VPIVGRVTMDQFM T0547 461 :PIMPLD 2vd8A 322 :IHLPCE T0547 521 :EVLG 2vd8A 328 :VPLG T0547 536 :AIISINEKG 2vd8A 335 :TLIGRQGDE T0547 545 :YEVEGIIEAQSILDTLEDLDYDIHAIMDIL 2vd8A 347 :ATEVAEYSGTINYEIITTISFRVPRIFIRN T0547 578 :ISNSKLVND 2vd8A 380 :VEVINYLND Number of specific fragments extracted= 35 number of extra gaps= 0 total=17813 Will force an alignment to be made, even if fragment is small Number of alignments=815 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)K20 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)T209 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)I212 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)A214 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)N216 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L218 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)D312 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)E314 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)I407 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)T409 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)G544 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)E546 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 Warning: unaligning (T0547)L563 because last residue in template chain is (2vd8A)I389 T0547 21 :VCINYEKKPA 2vd8A 4 :APFYRDTWVE T0547 50 :RFPHLIQKQIEN 2vd8A 14 :VDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 76 :KGGFNAVYP 2vd8A 31 :PSDVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2vd8A 62 :TRLAVAFLDEALVLRRAGITAPILVLGPSPPRD T0547 141 :NIGFIAAEM 2vd8A 95 :INVAAENDV T0547 154 :TLTIE 2vd8A 104 :ALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLHSAGVGI 2vd8A 129 :HINFDSGMGRIGI T0547 215 :V 2vd8A 150 :F T0547 219 :KENKLLEQFTMIHFHLGS 2vd8A 154 :LEGAPFLELEGVYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :M 2vd8A 197 :F T0547 263 :AKN 2vd8A 198 :GVD T0547 269 :INL 2vd8A 204 :VHT T0547 283 :KNEKSR 2vd8A 231 :GLSPSV T0547 305 :NIAEQKK 2vd8A 237 :EIRPFLP T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 344 :YAENKLILKK 2vd8A 279 :EEWIATVAIG T0547 366 :YKSIKPSNALEYLHD 2vd8A 289 :YADGWLRRLQGFEVL T0547 382 :IDHLESI 2vd8A 309 :VPIVGRV T0547 391 :LFDLGYVDLQDRSNAE 2vd8A 316 :TMDQFMIHLPCEVPLG T0547 410 :HLIT 2vd8A 335 :TLIG T0547 424 :QNPADLLAIQDEVQERY 2vd8A 340 :QGDEYISATEVAEYSGT T0547 451 :PDFWGLEQNFPIMP 2vd8A 357 :INYEIITTISFRVP T0547 476 :A 2vd8A 371 :R T0547 539 :SINEK 2vd8A 372 :IFIRN T0547 547 :VEGIIE 2vd8A 380 :VEVINY T0547 560 :LED 2vd8A 386 :LND Number of specific fragments extracted= 35 number of extra gaps= 0 total=17848 Will force an alignment to be made, even if fragment is small Number of alignments=816 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)D40 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)P371 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)I407 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)T409 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)G544 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 T0547 41 :DGYKGPLLL 2vd8A 4 :APFYRDTWV T0547 50 :RFPHLIQKQIEN 2vd8A 14 :VDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :NQ 2vd8A 43 :NA T0547 90 :YPGF 2vd8A 49 :YVPV T0547 97 :LVKLG 2vd8A 56 :ALEAG T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 2vd8A 61 :ATRLAVAFLDEALVLRRAGITAPILVLGPSPPR T0547 140 :INIGFIAAEM 2vd8A 94 :DINVAAENDV T0547 154 :TLTIE 2vd8A 104 :ALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLHSAGVGI 2vd8A 129 :HINFDSGMGRIGI T0547 206 :LT 2vd8A 142 :RE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENK 2vd8A 154 :LEGAP T0547 224 :LEQFTMIHFHLGS 2vd8A 159 :FLELEGVYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :M 2vd8A 197 :F T0547 263 :AKN 2vd8A 198 :GVD T0547 310 :KKDLEPDIFI 2vd8A 215 :FQGITFNAVR T0547 321 :SGRFVAA 2vd8A 225 :IGIAMYG T0547 328 :NHAVLI 2vd8A 248 :PALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 344 :YAENKLILKKQNPKLIDELYDLYKSIK 2vd8A 279 :EEWIATVAIGYADGWLRRLQGFEVLVN T0547 382 :IDHLESI 2vd8A 309 :VPIVGRV T0547 391 :LFDLGYVDLQDRSNAE 2vd8A 316 :TMDQFMIHLPCEVPLG T0547 410 :HLITK 2vd8A 335 :TLIGR T0547 437 :QERYLVNFSLFQSMPDFWG 2vd8A 340 :QGDEYISATEVAEYSGTIN T0547 527 :HNLFTHP 2vd8A 359 :YEIITTI T0547 534 :TEAIISINEK 2vd8A 367 :FRVPRIFIRN T0547 557 :LDTLEDLDY 2vd8A 380 :VEVINYLND Number of specific fragments extracted= 34 number of extra gaps= 0 total=17882 Will force an alignment to be made, even if fragment is small Number of alignments=817 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)K28 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)P315 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)A326 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)W454 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)L456 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)K506 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)N508 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E546 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 T0547 29 :PAII 2vd8A 4 :APFY T0547 45 :GPLLL 2vd8A 8 :RDTWV T0547 50 :RFPHLIQKQIEN 2vd8A 14 :VDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 2vd8A 62 :TRLAVAFLDEALVLRRAGITAPILVLGPSPP T0547 139 :LINIGFIAAEM 2vd8A 93 :RDINVAAENDV T0547 154 :TLTIE 2vd8A 104 :ALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLHSAGVGI 2vd8A 129 :HINFDSGMGRIGI T0547 206 :LT 2vd8A 142 :RE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENK 2vd8A 154 :LEGAP T0547 224 :LEQFTMIHFHLGS 2vd8A 159 :FLELEGVYTHFAT T0547 238 :ITEIHPL 2vd8A 174 :EVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :M 2vd8A 197 :F T0547 263 :AKN 2vd8A 198 :GVD T0547 269 :I 2vd8A 204 :V T0547 278 :EY 2vd8A 205 :HT T0547 283 :KNEKSRNYTL 2vd8A 231 :GLSPSVEIRP T0547 312 :DLE 2vd8A 241 :FLP T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 352 :K 2vd8A 272 :V T0547 429 :LL 2vd8A 273 :TY T0547 453 :F 2vd8A 275 :R T0547 457 :EQNFPIMPLDR 2vd8A 279 :EEWIATVAIGY T0547 485 :SDGEISYSKDK 2vd8A 290 :ADGWLRRLQGF T0547 501 :DVDVE 2vd8A 301 :EVLVN T0547 509 :YF 2vd8A 309 :VP T0547 511 :LGF 2vd8A 312 :VGR T0547 532 :HPTEAIISI 2vd8A 316 :TMDQFMIHL T0547 541 :NEKG 2vd8A 328 :VPLG T0547 547 :VEGIIEAQ 2vd8A 335 :TLIGRQGD T0547 555 :SILDTLEDLDYDIHAIMDIL 2vd8A 346 :SATEVAEYSGTINYEIITTI T0547 601 :NDNGYLKSIG 2vd8A 366 :SFRVPRIFIR Number of specific fragments extracted= 42 number of extra gaps= 0 total=17924 Will force an alignment to be made, even if fragment is small Number of alignments=818 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)K28 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)R288 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)S403 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)A405 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)L441 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)G544 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)Y545 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 T0547 29 :PAI 2vd8A 4 :APF T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 76 :KGGFNAVYP 2vd8A 31 :PSDVEIFAV T0547 88 :NQ 2vd8A 43 :NA T0547 90 :YPGF 2vd8A 49 :YVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 2vd8A 62 :TRLAVAFLDEALVLRRAGITAPILVLGPSPPR T0547 140 :INIGFIAAEM 2vd8A 94 :DINVAAENDV T0547 154 :TLTIE 2vd8A 104 :ALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLHSAGVG 2vd8A 129 :HINFDSGMGRIG T0547 205 :GLT 2vd8A 141 :IRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENK 2vd8A 154 :LEGAP T0547 224 :LEQFTMIHFHLGSQ 2vd8A 159 :FLELEGVYTHFATA T0547 238 :ITEIHPL 2vd8A 174 :EVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :M 2vd8A 197 :F T0547 263 :AKN 2vd8A 198 :GVD T0547 269 :IN 2vd8A 204 :VH T0547 283 :KNEKS 2vd8A 239 :RPFLP T0547 314 :E 2vd8A 247 :E T0547 328 :NHAVLI 2vd8A 248 :PALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 346 :EN 2vd8A 266 :DG T0547 350 :ILKKQ 2vd8A 268 :ISYNV T0547 402 :R 2vd8A 273 :T T0547 406 :EILTHLITKK 2vd8A 279 :EEWIATVAIG T0547 417 :ILLLGDKQNPADLL 2vd8A 289 :YADGWLRRLQGFEV T0547 438 :E 2vd8A 305 :N T0547 442 :VNFSLFQSMP 2vd8A 309 :VPIVGRVTMD T0547 535 :EAIISI 2vd8A 319 :QFMIHL T0547 541 :NEK 2vd8A 329 :PLG T0547 546 :EVEGIIEAQ 2vd8A 335 :TLIGRQGDE T0547 555 :SILDTLEDLDYD 2vd8A 346 :SATEVAEYSGTI T0547 595 :ELYLFLNDNGYLKSIGV 2vd8A 358 :NYEIITTISFRVPRIFI Number of specific fragments extracted= 39 number of extra gaps= 0 total=17963 Will force an alignment to be made, even if fragment is small Number of alignments=819 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)G5 because first residue in template chain is (2vd8A)E3 Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)T209 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)I212 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)A214 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)N216 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L218 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)P315 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)E386 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)I407 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)T409 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)G487 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)I489 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 T0547 6 :IDI 2vd8A 4 :APF T0547 43 :YKGPLLLRFPHLIQKQIEN 2vd8A 7 :YRDTWVEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 76 :KGGFNAVYP 2vd8A 31 :PSDVEIFAV T0547 88 :NQ 2vd8A 43 :NA T0547 90 :YPGF 2vd8A 49 :YVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2vd8A 62 :TRLAVAFLDEALVLRRAGITAPILVLGPSPPRD T0547 141 :NIGFIAAEM 2vd8A 95 :INVAAENDV T0547 154 :TLTIE 2vd8A 104 :ALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLHS 2vd8A 129 :HINFDSGM T0547 202 :SKFGLTS 2vd8A 137 :GRIGIRE T0547 215 :V 2vd8A 150 :F T0547 219 :KENKLLEQFTMIHFHLGS 2vd8A 154 :LEGAPFLELEGVYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :M 2vd8A 197 :F T0547 263 :AKN 2vd8A 198 :GVD T0547 269 :INL 2vd8A 204 :VHT T0547 285 :EKSRNY 2vd8A 235 :SVEIRP T0547 310 :KKD 2vd8A 241 :FLP T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 344 :YAENKLILKKQNPKL 2vd8A 279 :EEWIATVAIGYADGW T0547 374 :ALEYLHDSIDHL 2vd8A 294 :LRRLQGFEVLVN T0547 391 :LFDLGYVDLQDRSNAE 2vd8A 316 :TMDQFMIHLPCEVPLG T0547 410 :HLIT 2vd8A 335 :TLIG T0547 427 :ADLL 2vd8A 342 :DEYI T0547 431 :AIQDEVQERYL 2vd8A 347 :ATEVAEYSGTI T0547 452 :DFWGLE 2vd8A 358 :NYEIIT T0547 469 :DEEPTRSASIWD 2vd8A 364 :TISFRVPRIFIR T0547 486 :D 2vd8A 376 :N T0547 490 :SYSKDKPL 2vd8A 380 :VEVINYLN Number of specific fragments extracted= 36 number of extra gaps= 0 total=17999 Will force an alignment to be made, even if fragment is small Number of alignments=820 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)T156 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)E158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)E164 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I166 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)L182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 T0547 50 :RFPHLIQKQIEN 2vd8A 14 :VDLDAIYNNVTH T0547 65 :NFNK 2vd8A 29 :FIPS T0547 78 :GFNAVYP 2vd8A 33 :DVEIFAV T0547 88 :NQY 2vd8A 43 :NAY T0547 91 :PGF 2vd8A 50 :VPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2vd8A 62 :TRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALT T0547 154 :TL 2vd8A 107 :VF T0547 159 :GLNEL 2vd8A 112 :WVDEA T0547 167 :IDIAKE 2vd8A 120 :WDGSST T0547 183 :RVRLHSAGVG 2vd8A 129 :HINFDSGMGR T0547 204 :FGLTS 2vd8A 139 :IGIRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENK 2vd8A 154 :LEGAP T0547 224 :LEQFTMIHFHLGS 2vd8A 159 :FLELEGVYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :M 2vd8A 197 :F T0547 263 :AKN 2vd8A 198 :GVD T0547 269 :I 2vd8A 204 :V Number of specific fragments extracted= 20 number of extra gaps= 0 total=18019 Will force an alignment to be made, even if fragment is small Number of alignments=821 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)T209 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)I212 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)A214 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)N216 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L218 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)D312 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)E314 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)I407 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)T409 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 Warning: unaligning (T0547)G544 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V379 Warning: unaligning (T0547)E546 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V379 T0547 48 :LLRFPHLIQKQIEN 2vd8A 12 :VEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 76 :KGGFNAVYP 2vd8A 31 :PSDVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2vd8A 62 :TRLAVAFLDEALVLRRAGITAPILVLGPSPPRD T0547 141 :NIGFIAAEM 2vd8A 95 :INVAAENDV T0547 154 :TLTIE 2vd8A 104 :ALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLHSAGVGI 2vd8A 129 :HINFDSGMGRIGI T0547 215 :V 2vd8A 150 :F T0547 219 :KENKLLEQFTMIHFHLGS 2vd8A 154 :LEGAPFLELEGVYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :M 2vd8A 197 :F T0547 263 :AKN 2vd8A 198 :GVD T0547 269 :INL 2vd8A 204 :VHT T0547 283 :KNEKSR 2vd8A 231 :GLSPSV T0547 305 :NIAEQKK 2vd8A 237 :EIRPFLP T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 344 :YAENKLILKK 2vd8A 279 :EEWIATVAIG T0547 366 :YKSIKPSNALEYLHD 2vd8A 289 :YADGWLRRLQGFEVL T0547 382 :IDHLESI 2vd8A 309 :VPIVGRV T0547 391 :LFDLGYVDLQDRSNAE 2vd8A 316 :TMDQFMIHLPCEVPLG T0547 410 :HLIT 2vd8A 335 :TLIG T0547 424 :QNPADLLAIQDEVQERY 2vd8A 340 :QGDEYISATEVAEYSGT T0547 451 :PDFWGLEQNFPIMP 2vd8A 357 :INYEIITTISFRVP T0547 537 :I 2vd8A 371 :R T0547 539 :SINEK 2vd8A 372 :IFIRN T0547 547 :VEGI 2vd8A 380 :VEVI Number of specific fragments extracted= 33 number of extra gaps= 0 total=18052 Will force an alignment to be made, even if fragment is small Number of alignments=822 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)P371 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)I407 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)T409 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 T0547 46 :PLLL 2vd8A 9 :DTWV T0547 50 :RFPHLIQKQIEN 2vd8A 14 :VDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :NQ 2vd8A 43 :NA T0547 90 :YPGF 2vd8A 49 :YVPV T0547 97 :LVKLG 2vd8A 56 :ALEAG T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 2vd8A 61 :ATRLAVAFLDEALVLRRAGITAPILVLGPSPPR T0547 140 :INIGFIAAEM 2vd8A 94 :DINVAAENDV T0547 154 :TLTIE 2vd8A 104 :ALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLHSAGVGI 2vd8A 129 :HINFDSGMGRIGI T0547 206 :LT 2vd8A 142 :RE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENK 2vd8A 154 :LEGAP T0547 224 :LEQFTMIHFHLGS 2vd8A 159 :FLELEGVYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :M 2vd8A 197 :F T0547 263 :AKN 2vd8A 198 :GVD T0547 310 :KKDLEPDIFI 2vd8A 215 :FQGITFNAVR T0547 321 :SGRFVAA 2vd8A 225 :IGIAMYG T0547 328 :NHAVLI 2vd8A 248 :PALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 344 :YAENKLILKKQNPKLIDELYDLYKSIK 2vd8A 279 :EEWIATVAIGYADGWLRRLQGFEVLVN T0547 382 :IDHLESI 2vd8A 309 :VPIVGRV T0547 391 :LFDLGYVDLQDRSNAE 2vd8A 316 :TMDQFMIHLPCEVPLG T0547 410 :HLIT 2vd8A 335 :TLIG Number of specific fragments extracted= 30 number of extra gaps= 0 total=18082 Will force an alignment to be made, even if fragment is small Number of alignments=823 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)P315 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)A326 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)W454 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)L456 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)K506 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)N508 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)E546 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 T0547 46 :PLLL 2vd8A 9 :DTWV T0547 50 :RFPHLIQKQIEN 2vd8A 14 :VDLDAIYNNVTH T0547 65 :NFN 2vd8A 29 :FIP T0547 77 :GGFNAVYP 2vd8A 32 :SDVEIFAV T0547 88 :N 2vd8A 43 :N T0547 89 :QYPGF 2vd8A 48 :DYVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 2vd8A 62 :TRLAVAFLDEALVLRRAGITAPILVLGPSPP T0547 139 :LINIGFIAAEM 2vd8A 93 :RDINVAAENDV T0547 154 :TLTIE 2vd8A 104 :ALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLHSAGVGI 2vd8A 129 :HINFDSGMGRIGI T0547 206 :LT 2vd8A 142 :RE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENK 2vd8A 154 :LEGAP T0547 224 :LEQFTMIHFHLGS 2vd8A 159 :FLELEGVYTHFAT T0547 238 :ITEIHPL 2vd8A 174 :EVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :M 2vd8A 197 :F T0547 263 :AKN 2vd8A 198 :GVD T0547 269 :I 2vd8A 204 :V T0547 278 :EY 2vd8A 205 :HT T0547 283 :KNEKSRNYTL 2vd8A 231 :GLSPSVEIRP T0547 312 :DLE 2vd8A 241 :FLP T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 352 :K 2vd8A 272 :V T0547 429 :LL 2vd8A 273 :TY T0547 453 :F 2vd8A 275 :R T0547 457 :EQNFPIMPLDR 2vd8A 279 :EEWIATVAIGY T0547 485 :SDGEISYSKDK 2vd8A 290 :ADGWLRRLQGF T0547 501 :DVDVE 2vd8A 301 :EVLVN T0547 509 :YF 2vd8A 309 :VP T0547 511 :LGF 2vd8A 312 :VGR T0547 532 :HPTEAIISI 2vd8A 316 :TMDQFMIHL T0547 541 :NEKG 2vd8A 328 :VPLG T0547 547 :VEGIIEAQ 2vd8A 335 :TLIGRQGD T0547 555 :SILDTLEDLDYDIHAIMD 2vd8A 346 :SATEVAEYSGTINYEIIT Number of specific fragments extracted= 40 number of extra gaps= 0 total=18122 Will force an alignment to be made, even if fragment is small Number of alignments=824 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)E210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)E213 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)V215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)R288 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)S403 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)A405 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)L441 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)G544 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)Y545 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 T0547 46 :PLLLRFPHLIQKQIEN 2vd8A 10 :TWVEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 76 :KGGFNAVYP 2vd8A 31 :PSDVEIFAV T0547 88 :NQ 2vd8A 43 :NA T0547 90 :YPGF 2vd8A 49 :YVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 2vd8A 62 :TRLAVAFLDEALVLRRAGITAPILVLGPSPPR T0547 140 :INIGFIAAEM 2vd8A 94 :DINVAAENDV T0547 154 :TLTIE 2vd8A 104 :ALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLHSAGVG 2vd8A 129 :HINFDSGMGRIG T0547 205 :GLT 2vd8A 141 :IRE T0547 214 :A 2vd8A 150 :F T0547 218 :LKENK 2vd8A 154 :LEGAP T0547 224 :LEQFTMIHFHLGSQ 2vd8A 159 :FLELEGVYTHFATA T0547 238 :ITEIHPL 2vd8A 174 :EVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :M 2vd8A 197 :F T0547 263 :AKN 2vd8A 198 :GVD T0547 269 :IN 2vd8A 204 :VH T0547 283 :KNEKS 2vd8A 239 :RPFLP T0547 314 :E 2vd8A 247 :E T0547 328 :NHAVLI 2vd8A 248 :PALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 346 :EN 2vd8A 266 :DG T0547 350 :ILKKQ 2vd8A 268 :ISYNV T0547 402 :R 2vd8A 273 :T T0547 406 :EILTHLITKK 2vd8A 279 :EEWIATVAIG T0547 417 :ILLLGDKQNPADLL 2vd8A 289 :YADGWLRRLQGFEV T0547 438 :E 2vd8A 305 :N T0547 442 :VNFSLFQSMP 2vd8A 309 :VPIVGRVTMD T0547 535 :EAIISI 2vd8A 319 :QFMIHL T0547 541 :NEK 2vd8A 329 :PLG T0547 546 :EVEGIIEAQ 2vd8A 335 :TLIGRQGDE T0547 555 :SILDTLEDLDYDI 2vd8A 346 :SATEVAEYSGTIN Number of specific fragments extracted= 37 number of extra gaps= 0 total=18159 Will force an alignment to be made, even if fragment is small Number of alignments=825 # 2vd8A read from all-align.a2m # found chain 2vd8A in template set Warning: unaligning (T0547)I62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E28 Warning: unaligning (T0547)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E28 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G42 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G42 Warning: unaligning (T0547)V94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)I55 Warning: unaligning (T0547)N96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)I55 Warning: unaligning (T0547)G159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E111 Warning: unaligning (T0547)N161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E111 Warning: unaligning (T0547)I167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L119 Warning: unaligning (T0547)I169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L119 Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Y128 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Y128 Warning: unaligning (T0547)T209 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E146 Warning: unaligning (T0547)L211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E146 Warning: unaligning (T0547)I212 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G149 Warning: unaligning (T0547)A214 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G149 Warning: unaligning (T0547)N216 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)S153 Warning: unaligning (T0547)L218 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)S153 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)Q183 Warning: unaligning (T0547)A247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)Q183 Warning: unaligning (T0547)L258 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)E196 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)E196 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)F203 Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)F203 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)L246 Warning: unaligning (T0547)P315 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)L246 Warning: unaligning (T0547)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V256 Warning: unaligning (T0547)V336 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V256 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)G265 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)G265 Warning: unaligning (T0547)S403 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)T278 Warning: unaligning (T0547)A405 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)T278 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)R308 Warning: unaligning (T0547)L441 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)R308 Warning: unaligning (T0547)G544 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2vd8A)V334 Warning: unaligning (T0547)Y545 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2vd8A)V334 T0547 44 :KGPLLLRFPHLIQKQIEN 2vd8A 8 :RDTWVEVDLDAIYNNVTH T0547 65 :NF 2vd8A 29 :FI T0547 76 :KGGFNAVYP 2vd8A 31 :PSDVEIFAV T0547 88 :NQ 2vd8A 43 :NA T0547 90 :YPGF 2vd8A 49 :YVPV T0547 97 :LVKLGK 2vd8A 56 :ALEAGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2vd8A 62 :TRLAVAFLDEALVLRRAGITAPILVLGPSPPRD T0547 141 :NIGFIAAEM 2vd8A 95 :INVAAENDV T0547 154 :TLTIE 2vd8A 104 :ALTVF T0547 162 :ELEAI 2vd8A 112 :WVDEA T0547 170 :AK 2vd8A 120 :WD T0547 174 :FKPK 2vd8A 122 :GSST T0547 181 :GLRVRLHS 2vd8A 129 :HINFDSGM T0547 202 :SKFGLTS 2vd8A 137 :GRIGIRE T0547 215 :V 2vd8A 150 :F T0547 219 :KENKLLEQFTMIHFHLGS 2vd8A 154 :LEGAPFLELEGVYTHFAT T0547 237 :QITEIHPL 2vd8A 173 :DEVETSYF T0547 248 :LNEAGNIYTE 2vd8A 184 :YNTFLEQLSW T0547 261 :M 2vd8A 197 :F T0547 263 :AKN 2vd8A 198 :GVD T0547 269 :INL 2vd8A 204 :VHT T0547 285 :EKSRNY 2vd8A 235 :SVEIRP T0547 310 :KKD 2vd8A 241 :FLP T0547 327 :ANHAVLI 2vd8A 247 :EPALSLH T0547 337 :LELFSQ 2vd8A 257 :AHIKQV T0547 346 :ENKL 2vd8A 266 :DGIS T0547 399 :LQDR 2vd8A 270 :YNVT T0547 406 :EILTHLITKKAILLLGDKQNPA 2vd8A 279 :EEWIATVAIGYADGWLRRLQGF T0547 429 :LL 2vd8A 301 :EV T0547 436 :VQE 2vd8A 303 :LVN T0547 442 :VNFSLFQSMPD 2vd8A 309 :VPIVGRVTMDQ T0547 477 :SIWDIT 2vd8A 320 :FMIHLP T0547 541 :NEK 2vd8A 329 :PLG T0547 546 :EVEGIIEAQ 2vd8A 335 :TLIGRQGDE T0547 555 :SILDTLEDLDYDIHAIMD 2vd8A 346 :SATEVAEYSGTINYEIIT Number of specific fragments extracted= 35 number of extra gaps= 0 total=18194 Will force an alignment to be made, even if fragment is small Number of alignments=826 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)D33 because first residue in template chain is (2yxxA)D2 T0547 34 :IVKELRD 2yxxA 3 :ILRKVAE T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 10 :IHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVW T0547 132 :NGFKDRELINIGF 2yxxA 89 :GNGKSRDQMEHFL T0547 148 :EMGHNI 2yxxA 102 :REDVRI T0547 155 :LTIEGLNELEAIIDIAKE 2yxxA 108 :VNVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLH 2yxxA 126 :GVEYFIRVNPE T0547 188 :SAGVGIW 2yxxA 139 :AKTHPHI T0547 196 :KSGGINSKFGLTSTELIEAVNLL 2yxxA 146 :STGLKKHKFGIPLEDLDSFMERF T0547 222 :KLLE 2yxxA 169 :RSMN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELR 2yxxA 173 :IRGLHVHIGSQITRVEPFVEAFSKVVRASERYG T0547 266 :LKAINLGGGLAVEYSQFK 2yxxA 206 :FEEINIGGGWGINYSGEE T0547 290 :YTLREYANDVVFILKNI 2yxxA 224 :LDLSSYREKVVPDLKRF T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQE 2yxxA 241 :KRVIVEIGRYIVAPSGYLLLRVVLVKRRH T0547 438 :ER 2yxxA 270 :NK T0547 440 :YLVNFSLFQSMPDFW 2yxxA 274 :VVVDGGMNVLIRPAL T0547 456 :LEQNFPIMPLDR 2yxxA 289 :YSAYHRIFVLGK T0547 470 :EEPTRSASIWDITCDSDGEI 2yxxA 301 :QGKEMRADVVGPLCESGDVI T0547 494 :DKPLFLHDVDVEK 2yxxA 321 :AYDRELPEVEPGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAII 2yxxA 334 :IIAVENAGAYGYTMSNNYNSTTRPAEVLV T0547 542 :EKGYEVEGIIEAQSILDTLEDLD 2yxxA 363 :RENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 22 number of extra gaps= 0 total=18216 Will force an alignment to be made, even if fragment is small Number of alignments=827 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 34 :IVKELRD 2yxxA 3 :ILRKVAE T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 10 :IHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVW T0547 132 :NGFKDRELINIGF 2yxxA 89 :GNGKSRDQMEHFL T0547 148 :EMGHNI 2yxxA 102 :REDVRI T0547 155 :LTIEGLNELEAIIDIAKE 2yxxA 108 :VNVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLH 2yxxA 126 :GVEYFIRVNPE T0547 188 :SAGVGIW 2yxxA 139 :AKTHPHI T0547 196 :KSGGINSKFGLTSTELIEAVNLL 2yxxA 146 :STGLKKHKFGIPLEDLDSFMERF T0547 222 :KLLE 2yxxA 169 :RSMN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELR 2yxxA 173 :IRGLHVHIGSQITRVEPFVEAFSKVVRASERYG T0547 266 :LKAINLGGGLAVEYSQFK 2yxxA 206 :FEEINIGGGWGINYSGEE T0547 290 :YTLREYANDVVFILKNI 2yxxA 224 :LDLSSYREKVVPDLKRF T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQE 2yxxA 241 :KRVIVEIGRYIVAPSGYLLLRVVLVKRRH T0547 438 :ER 2yxxA 270 :NK T0547 440 :YLVNFSLFQSMPDFW 2yxxA 274 :VVVDGGMNVLIRPAL T0547 456 :LEQNFPIMPLDR 2yxxA 289 :YSAYHRIFVLGK T0547 470 :EEPTRSASIWDITCDSDGEI 2yxxA 301 :QGKEMRADVVGPLCESGDVI T0547 494 :DKPLFLHDVDVEK 2yxxA 321 :AYDRELPEVEPGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAII 2yxxA 334 :IIAVENAGAYGYTMSNNYNSTTRPAEVLV T0547 542 :EKGYEVEGIIEAQSILDTLEDL 2yxxA 363 :RENGRISLIRRRETEMDIFKDV Number of specific fragments extracted= 22 number of extra gaps= 0 total=18238 Will force an alignment to be made, even if fragment is small Number of alignments=828 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)D33 because first residue in template chain is (2yxxA)D2 Warning: unaligning (T0547)Y565 because last residue in template chain is (2yxxA)M386 T0547 34 :IVKELRD 2yxxA 3 :ILRKVAE T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFNKA 2yxxA 10 :IHGTPTYVYFEETLRKRSRLVKEVFEGV T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVW T0547 132 :NGFKDRELINIGF 2yxxA 89 :GNGKSRDQMEHFL T0547 148 :EMGHNI 2yxxA 102 :REDVRI T0547 155 :LTIEGLNELEAIIDIA 2yxxA 108 :VNVDSFEEMEIWRELN T0547 176 :P 2yxxA 124 :P T0547 177 :KPNIGLRVRLH 2yxxA 126 :GVEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLK 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERFR T0547 224 :LE 2yxxA 171 :MN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 173 :IRGLHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFK 2yxxA 205 :GFEEINIGGGWGINYSGEE T0547 290 :YTLREYANDVVFILK 2yxxA 224 :LDLSSYREKVVPDLK T0547 316 :DIFIESGRFVAANHAVLIAPVLELF 2yxxA 242 :RVIVEIGRYIVAPSGYLLLRVVLVK T0547 433 :QDEVQERYLVNFSLFQSMPDFW 2yxxA 267 :RRHNKAFVVVDGGMNVLIRPAL T0547 456 :LEQNFPIMPLDR 2yxxA 289 :YSAYHRIFVLGK T0547 470 :EEPTRSASIWDITCDSDGEISYS 2yxxA 301 :QGKEMRADVVGPLCESGDVIAYD T0547 497 :LFLHDVDVEK 2yxxA 324 :RELPEVEPGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2yxxA 334 :IIAVENAGAYGYTMSNNYNSTTRPAEVLVR T0547 543 :KGYEVEGIIEAQSILDTLEDLD 2yxxA 364 :ENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 21 number of extra gaps= 0 total=18259 Will force an alignment to be made, even if fragment is small Number of alignments=829 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 34 :IVKELRD 2yxxA 3 :ILRKVAE T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFNKA 2yxxA 10 :IHGTPTYVYFEETLRKRSRLVKEVFEGV T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVW T0547 132 :NGFKDRELINIGF 2yxxA 89 :GNGKSRDQMEHFL T0547 148 :EMGHNI 2yxxA 102 :REDVRI T0547 155 :LTIEGLNELEAIIDIA 2yxxA 108 :VNVDSFEEMEIWRELN T0547 176 :P 2yxxA 124 :P T0547 177 :KPNIGLRVRLH 2yxxA 126 :GVEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLK 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERFR T0547 224 :LE 2yxxA 171 :MN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 173 :IRGLHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFK 2yxxA 205 :GFEEINIGGGWGINYSGEE T0547 290 :YTLREYANDVVFILK 2yxxA 224 :LDLSSYREKVVPDLK T0547 316 :DIFIESGRFVAANHAVLIAPVLELF 2yxxA 242 :RVIVEIGRYIVAPSGYLLLRVVLVK T0547 433 :QDEVQERYLVNFSLFQSMPDFW 2yxxA 267 :RRHNKAFVVVDGGMNVLIRPAL T0547 456 :LEQNFPIMPLDR 2yxxA 289 :YSAYHRIFVLGK T0547 470 :EEPTRSASIWDITCDSDGEISYS 2yxxA 301 :QGKEMRADVVGPLCESGDVIAYD T0547 497 :LFLHDVDVEK 2yxxA 324 :RELPEVEPGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 2yxxA 334 :IIAVENAGAYGYTMSNNYNSTTRPAEVLVR T0547 543 :KGYEVEGIIEAQSILDTLEDLD 2yxxA 364 :ENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 21 number of extra gaps= 0 total=18280 Will force an alignment to be made, even if fragment is small Number of alignments=830 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)D562 because last residue in template chain is (2yxxA)M386 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2yxxA 4 :LRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEGV T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAY 2yxxA 62 :FGMDVVTKGELLAAKLA T0547 123 :NNEGAPITVNGFKDRELINIGFIAAE 2yxxA 80 :VPSHTVVWNGNGKSRDQMEHFLREDV T0547 153 :ITLTIEGLNELEAIIDIA 2yxxA 106 :RIVNVDSFEEMEIWRELN T0547 175 :KPKPNIGLRVRLH 2yxxA 124 :PEGVEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLK 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERFR T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIY 2yxxA 170 :SMNIRGLHVHIGSQITRVEPFVEAFSKVVRAS T0547 262 :GAKNLKAINLGGGLAVEYSQFKNEKSRNYT 2yxxA 202 :ERYGFEEINIGGGWGINYSGEELDLSSYRE T0547 306 :IAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFS 2yxxA 232 :KVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKR T0547 434 :DEVQERYLVNFSLFQSMPDFWGLEQNFPIMPL 2yxxA 268 :RHNKAFVVVDGGMNVLIRPALYSAYHRIFVLG T0547 469 :DEEPTRSASIWDITCDSDGEISYSKDKP 2yxxA 300 :KQGKEMRADVVGPLCESGDVIAYDRELP T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLE 2yxxA 328 :EVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 13 number of extra gaps= 0 total=18293 Will force an alignment to be made, even if fragment is small Number of alignments=831 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 38 :LRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2yxxA 6 :KVAEIHGTPTYVYFEETLRKRSRLVKEVFEGV T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAY 2yxxA 62 :FGMDVVTKGELLAAKLA T0547 123 :NNEGAPITVNGFKDRELINIGFIAAE 2yxxA 80 :VPSHTVVWNGNGKSRDQMEHFLREDV T0547 153 :ITLTIEGLNELEAIIDIA 2yxxA 106 :RIVNVDSFEEMEIWRELN T0547 175 :KPKPNIGLRVRLH 2yxxA 124 :PEGVEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLK 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERFR T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIY 2yxxA 170 :SMNIRGLHVHIGSQITRVEPFVEAFSKVVRAS T0547 262 :GAKNLKAINLGGGLAVEYSQFKNEKSRNYT 2yxxA 202 :ERYGFEEINIGGGWGINYSGEELDLSSYRE T0547 306 :IAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFS 2yxxA 232 :KVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKR T0547 434 :DEVQERYLVNFSLFQSMPDFWGLEQNFPIMPL 2yxxA 268 :RHNKAFVVVDGGMNVLIRPALYSAYHRIFVLG T0547 469 :DEEPTRSASIWDITCDSDGEISYSKDKP 2yxxA 300 :KQGKEMRADVVGPLCESGDVIAYDRELP T0547 504 :VEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGI 2yxxA 328 :EVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRR Number of specific fragments extracted= 13 number of extra gaps= 0 total=18306 Will force an alignment to be made, even if fragment is small Number of alignments=832 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2yxxA)D2 Warning: unaligning (T0547)L456 because last residue in template chain is (2yxxA)M386 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 37 :VNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSR T0547 140 :INIGF 2yxxA 95 :DQMEH T0547 146 :AAEMGHNI 2yxxA 100 :FLREDVRI T0547 155 :LTIEGLNELEAIIDIAKE 2yxxA 108 :VNVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLH 2yxxA 126 :GVEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKEN 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERFRSM T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 172 :NIRGLHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEY 2yxxA 205 :GFEEINIGGGWGINY T0547 282 :FKNEK 2yxxA 220 :SGEEL T0547 291 :TLREYANDVVFILKNI 2yxxA 225 :DLSSYREKVVPDLKRF T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 2yxxA 241 :KRVIVEIGRYIVAPSGYLLLRVVLVKRRHN T0547 346 :ENKLILKKQNPKLIDE 2yxxA 271 :KAFVVVDGGMNVLIRP T0547 362 :LYDLYKSIKPSNALEYL 2yxxA 288 :LYSAYHRIFVLGKQGKE T0547 380 :DSIDHLESILTLFDLGYVD 2yxxA 305 :MRADVVGPLCESGDVIAYD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYN T0547 426 :PADLLAIQ 2yxxA 355 :TRPAEVLV T0547 434 :DEVQERYLVNFSLFQSMPDFWG 2yxxA 364 :ENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 19 number of extra gaps= 0 total=18325 Will force an alignment to be made, even if fragment is small Number of alignments=833 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)I34 because first residue in template chain is (2yxxA)D2 Warning: unaligning (T0547)L456 because last residue in template chain is (2yxxA)M386 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLGK 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEGF T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2yxxA 63 :GMDVVTKGELLAAKLAGVPSHTVVWNGNGKSR T0547 140 :INIGF 2yxxA 95 :DQMEH T0547 146 :AAEMGHNI 2yxxA 100 :FLREDVRI T0547 155 :LTIEGLNELEAIIDIAKER 2yxxA 108 :VNVDSFEEMEIWRELNPEG T0547 178 :PNIGLRVRLH 2yxxA 127 :VEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKEN 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERFRSM T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTE 2yxxA 172 :NIRGLHVHIGSQITRVEPFVEAFSKVVRASER T0547 264 :KNLKAINLGGGLAVEY 2yxxA 204 :YGFEEINIGGGWGINY T0547 284 :NEKSR 2yxxA 220 :SGEEL T0547 291 :TLREYA 2yxxA 225 :DLSSYR T0547 302 :ILKNIAE 2yxxA 232 :KVVPDLK T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2yxxA 239 :RFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHN T0547 346 :ENKLILKKQNPKLIDE 2yxxA 271 :KAFVVVDGGMNVLIRP T0547 362 :LYDLYKSIKPSNAL 2yxxA 288 :LYSAYHRIFVLGKQ T0547 377 :YLHDSIDHLESILTLFDLGYVD 2yxxA 302 :GKEMRADVVGPLCESGDVIAYD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTT T0547 429 :LLAIQ 2yxxA 358 :AEVLV T0547 434 :DEVQERYLVNFSLFQSMPDFWG 2yxxA 364 :ENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 20 number of extra gaps= 0 total=18345 Will force an alignment to be made, even if fragment is small Number of alignments=834 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)I34 because first residue in template chain is (2yxxA)D2 Warning: unaligning (T0547)L456 because last residue in template chain is (2yxxA)M386 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 37 :VNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSR T0547 140 :INIGF 2yxxA 95 :DQMEH T0547 146 :AAEMGHNI 2yxxA 100 :FLREDVRI T0547 155 :LTIEGLNELEAIIDIAKE 2yxxA 108 :VNVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLH 2yxxA 126 :GVEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLK 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERFR T0547 222 :KL 2yxxA 170 :SM T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 172 :NIRGLHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEY 2yxxA 205 :GFEEINIGGGWGINY T0547 284 :NEKS 2yxxA 220 :SGEE T0547 290 :YTLREYANDVVFILKNI 2yxxA 224 :LDLSSYREKVVPDLKRF T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 2yxxA 241 :KRVIVEIGRYIVAPSGYLLLRVVLVKRRHN T0547 346 :ENKLILKKQNPKLIDE 2yxxA 271 :KAFVVVDGGMNVLIRP T0547 362 :LYDLYKSIKPSNALE 2yxxA 288 :LYSAYHRIFVLGKQG T0547 378 :LHDSIDHLESILTLFDLGYVD 2yxxA 303 :KEMRADVVGPLCESGDVIAYD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTT T0547 429 :LLAIQ 2yxxA 358 :AEVLV T0547 434 :DEVQERYLVNFSLFQSMPDFWG 2yxxA 364 :ENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 20 number of extra gaps= 0 total=18365 Will force an alignment to be made, even if fragment is small Number of alignments=835 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)I34 because first residue in template chain is (2yxxA)D2 Warning: unaligning (T0547)L456 because last residue in template chain is (2yxxA)M386 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2yxxA 37 :VNLLPTFAVKANNNPVLLKILREEGF T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2yxxA 63 :GMDVVTKGELLAAKLAGVPSHTVVWNGNGKSR T0547 140 :INIGF 2yxxA 95 :DQMEH T0547 146 :AAEMGHNI 2yxxA 100 :FLREDVRI T0547 155 :LTIEGLNELEAIIDIAKE 2yxxA 108 :VNVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLH 2yxxA 126 :GVEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLL 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERF T0547 221 :NKL 2yxxA 169 :RSM T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIY 2yxxA 172 :NIRGLHVHIGSQITRVEPFVEAFSKVVRAS T0547 259 :RKMGA 2yxxA 202 :ERYGF T0547 267 :KAINLGGGLAVEY 2yxxA 207 :EEINIGGGWGINY T0547 284 :NEKSR 2yxxA 220 :SGEEL T0547 291 :TLREYANDVVFILKNI 2yxxA 225 :DLSSYREKVVPDLKRF T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 2yxxA 241 :KRVIVEIGRYIVAPSGYLLLRVVLVKRRHN T0547 346 :ENKLILKKQNPKLIDE 2yxxA 271 :KAFVVVDGGMNVLIRP T0547 362 :LYDLYKSIKPSNALE 2yxxA 288 :LYSAYHRIFVLGKQG T0547 378 :LHDSIDHLESILTLFDLGYVD 2yxxA 303 :KEMRADVVGPLCESGDVIAYD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTT T0547 429 :LLAIQ 2yxxA 358 :AEVLV T0547 434 :DEVQERYLVNFSLFQSMPDFWG 2yxxA 364 :ENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 21 number of extra gaps= 0 total=18386 Will force an alignment to be made, even if fragment is small Number of alignments=836 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)I34 because first residue in template chain is (2yxxA)D2 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSR T0547 140 :INIGF 2yxxA 95 :DQMEH T0547 146 :AAEMGHNI 2yxxA 100 :FLREDVRI T0547 155 :LTIEGLNELEAIIDI 2yxxA 108 :VNVDSFEEMEIWREL T0547 174 :FKPKPNIGLRVRLH 2yxxA 123 :NPEGVEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLL 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERF T0547 221 :NKL 2yxxA 169 :RSM T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 172 :NIRGLHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEY 2yxxA 205 :GFEEINIGGGWGINY T0547 284 :NEKSR 2yxxA 220 :SGEEL T0547 291 :TLREYANDVV 2yxxA 225 :DLSSYREKVV T0547 308 :EQKK 2yxxA 235 :PDLK T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2yxxA 239 :RFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHN T0547 346 :ENKLILKKQNPKLIDE 2yxxA 271 :KAFVVVDGGMNVLIRP T0547 362 :LYDLYKSIKPSNALE 2yxxA 288 :LYSAYHRIFVLGKQG T0547 378 :LHDSIDHLESILTLFDLGYVD 2yxxA 303 :KEMRADVVGPLCESGDVIAYD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTT T0547 534 :TEAIISINEKGYEVEG 2yxxA 357 :PAEVLVRENGRISLIR T0547 582 :KLVNDKQK 2yxxA 373 :RRETEMDI T0547 606 :LKSIGV 2yxxA 381 :FKDVVM Number of specific fragments extracted= 22 number of extra gaps= 0 total=18408 Will force an alignment to be made, even if fragment is small Number of alignments=837 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)I34 because first residue in template chain is (2yxxA)D2 Warning: unaligning (T0547)L456 because last residue in template chain is (2yxxA)M386 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLGK 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEGF T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2yxxA 63 :GMDVVTKGELLAAKLAGVPSHTVVWNGNGKSR T0547 140 :INIGF 2yxxA 95 :DQMEH T0547 146 :AAEMGHNI 2yxxA 100 :FLREDVRI T0547 155 :LTIEGLNELEAIIDIAKER 2yxxA 108 :VNVDSFEEMEIWRELNPEG T0547 178 :PNIGLRVRLH 2yxxA 127 :VEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLL 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERF T0547 222 :KLL 2yxxA 169 :RSM T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 172 :NIRGLHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEY 2yxxA 205 :GFEEINIGGGWGINY T0547 284 :NEKSR 2yxxA 220 :SGEEL T0547 291 :TLREYAN 2yxxA 225 :DLSSYRE T0547 306 :IAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2yxxA 232 :KVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHN T0547 346 :ENKLILKKQNPKLIDE 2yxxA 271 :KAFVVVDGGMNVLIRP T0547 362 :LYDLYKSIKPSNALE 2yxxA 288 :LYSAYHRIFVLGKQG T0547 378 :LHDSIDHLESILTLFDLGYVD 2yxxA 303 :KEMRADVVGPLCESGDVIAYD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTT T0547 429 :LLAIQ 2yxxA 358 :AEVLV T0547 434 :DEVQERYLVNFSLFQSMPDFWG 2yxxA 364 :ENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 20 number of extra gaps= 0 total=18428 Will force an alignment to be made, even if fragment is small Number of alignments=838 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2yxxA 4 :LRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 37 :VNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSR T0547 140 :INIGF 2yxxA 95 :DQMEH T0547 146 :AAEMGHNI 2yxxA 100 :FLREDVRI T0547 155 :LTIEGLNELEAIIDIAKE 2yxxA 108 :VNVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLH 2yxxA 126 :GVEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKEN 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERFRSM T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 172 :NIRGLHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEY 2yxxA 205 :GFEEINIGGGWGINY T0547 282 :FKNEK 2yxxA 220 :SGEEL T0547 291 :TLREYANDVVFILKNI 2yxxA 225 :DLSSYREKVVPDLKRF T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 2yxxA 241 :KRVIVEIGRYIVAPSGYLLLRVVLVKRRHN T0547 346 :ENKLILKKQNPKLIDE 2yxxA 271 :KAFVVVDGGMNVLIRP T0547 362 :LYDLYKSIKPSNALEYL 2yxxA 288 :LYSAYHRIFVLGKQGKE T0547 380 :DSIDHLESILTLFDLGYVD 2yxxA 305 :MRADVVGPLCESGDVIAYD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQN 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYN T0547 426 :PADLLAIQ 2yxxA 355 :TRPAEVLV T0547 434 :DEVQERYLVNFSLFQSMPD 2yxxA 364 :ENGRISLIRRRETEMDIFK Number of specific fragments extracted= 19 number of extra gaps= 0 total=18447 Will force an alignment to be made, even if fragment is small Number of alignments=839 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLGK 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEGF T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2yxxA 63 :GMDVVTKGELLAAKLAGVPSHTVVWNGNGKSR T0547 140 :INIGF 2yxxA 95 :DQMEH T0547 146 :AAEMGHNI 2yxxA 100 :FLREDVRI T0547 155 :LTIEGLNELEAIIDIAKER 2yxxA 108 :VNVDSFEEMEIWRELNPEG T0547 178 :PNIGLRVRLH 2yxxA 127 :VEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKEN 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERFRSM T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTE 2yxxA 172 :NIRGLHVHIGSQITRVEPFVEAFSKVVRASER T0547 264 :KNLKAINLGGGLAVEY 2yxxA 204 :YGFEEINIGGGWGINY T0547 284 :NEKSR 2yxxA 220 :SGEEL T0547 291 :TLREYA 2yxxA 225 :DLSSYR T0547 302 :ILKNIAE 2yxxA 232 :KVVPDLK T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2yxxA 239 :RFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHN T0547 346 :ENKLILKKQNPKLIDE 2yxxA 271 :KAFVVVDGGMNVLIRP T0547 362 :LYDLYKSIKPSNAL 2yxxA 288 :LYSAYHRIFVLGKQ T0547 377 :YLHDSIDHLESILTLFDLGYVD 2yxxA 302 :GKEMRADVVGPLCESGDVIAYD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTT T0547 429 :LLAIQ 2yxxA 358 :AEVLV T0547 434 :DEVQERYLVNFSLFQSMPDF 2yxxA 364 :ENGRISLIRRRETEMDIFKD Number of specific fragments extracted= 20 number of extra gaps= 0 total=18467 Will force an alignment to be made, even if fragment is small Number of alignments=840 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 37 :VNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSR T0547 140 :INIGF 2yxxA 95 :DQMEH T0547 146 :AAEMGHNI 2yxxA 100 :FLREDVRI T0547 155 :LTIEGLNELEAIIDIAKE 2yxxA 108 :VNVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLH 2yxxA 126 :GVEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLLK 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERFR T0547 222 :KL 2yxxA 170 :SM T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 172 :NIRGLHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEY 2yxxA 205 :GFEEINIGGGWGINY T0547 284 :NEKS 2yxxA 220 :SGEE T0547 290 :YTLREYANDVVFILKNI 2yxxA 224 :LDLSSYREKVVPDLKRF T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 2yxxA 241 :KRVIVEIGRYIVAPSGYLLLRVVLVKRRHN T0547 346 :ENKLILKKQNPKLIDE 2yxxA 271 :KAFVVVDGGMNVLIRP T0547 362 :LYDLYKSIKPSNALE 2yxxA 288 :LYSAYHRIFVLGKQG T0547 378 :LHDSIDHLESILTLFDLGYVD 2yxxA 303 :KEMRADVVGPLCESGDVIAYD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTT T0547 429 :LLAIQ 2yxxA 358 :AEVLV T0547 434 :DEVQERYLVNFSLFQSMPDF 2yxxA 364 :ENGRISLIRRRETEMDIFKD Number of specific fragments extracted= 20 number of extra gaps= 0 total=18487 Will force an alignment to be made, even if fragment is small Number of alignments=841 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 2yxxA 37 :VNLLPTFAVKANNNPVLLKILREEGF T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2yxxA 63 :GMDVVTKGELLAAKLAGVPSHTVVWNGNGKSR T0547 140 :INIGF 2yxxA 95 :DQMEH T0547 146 :AAEMGHNI 2yxxA 100 :FLREDVRI T0547 155 :LTIEGLNELEAIIDIAKE 2yxxA 108 :VNVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLH 2yxxA 126 :GVEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLL 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERF T0547 221 :NKL 2yxxA 169 :RSM T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIY 2yxxA 172 :NIRGLHVHIGSQITRVEPFVEAFSKVVRAS T0547 259 :RKMGA 2yxxA 202 :ERYGF T0547 267 :KAINLGGGLAVEY 2yxxA 207 :EEINIGGGWGINY T0547 284 :NEKSR 2yxxA 220 :SGEEL T0547 291 :TLREYANDVVFILKNI 2yxxA 225 :DLSSYREKVVPDLKRF T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEY 2yxxA 241 :KRVIVEIGRYIVAPSGYLLLRVVLVKRRHN T0547 346 :ENKLILKKQNPKLIDE 2yxxA 271 :KAFVVVDGGMNVLIRP T0547 362 :LYDLYKSIKPSNALE 2yxxA 288 :LYSAYHRIFVLGKQG T0547 378 :LHDSIDHLESILTLFDLGYVD 2yxxA 303 :KEMRADVVGPLCESGDVIAYD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTT T0547 429 :LLAIQ 2yxxA 358 :AEVLV T0547 434 :DEVQERYLVNFSLFQSMPDFW 2yxxA 364 :ENGRISLIRRRETEMDIFKDV Number of specific fragments extracted= 21 number of extra gaps= 0 total=18508 Will force an alignment to be made, even if fragment is small Number of alignments=842 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSR T0547 140 :INIGF 2yxxA 95 :DQMEH T0547 146 :AAEMGHNI 2yxxA 100 :FLREDVRI T0547 155 :LTIEGLNELEAIIDI 2yxxA 108 :VNVDSFEEMEIWREL T0547 174 :FKPKPNIGLRVRLH 2yxxA 123 :NPEGVEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLL 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERF T0547 221 :NKL 2yxxA 169 :RSM T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 172 :NIRGLHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEY 2yxxA 205 :GFEEINIGGGWGINY T0547 284 :NEKSR 2yxxA 220 :SGEEL T0547 291 :TLREYANDVV 2yxxA 225 :DLSSYREKVV T0547 308 :EQKK 2yxxA 235 :PDLK T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2yxxA 239 :RFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHN T0547 346 :ENKLILKKQNPKLIDE 2yxxA 271 :KAFVVVDGGMNVLIRP T0547 362 :LYDLYKSIKPSNALE 2yxxA 288 :LYSAYHRIFVLGKQG T0547 378 :LHDSIDHLESILTLFDLGYVD 2yxxA 303 :KEMRADVVGPLCESGDVIAYD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTT T0547 534 :TEAIISINEKGYEVEG 2yxxA 357 :PAEVLVRENGRISLIR T0547 582 :KLVNDKQK 2yxxA 373 :RRETEMDI Number of specific fragments extracted= 21 number of extra gaps= 0 total=18529 Will force an alignment to be made, even if fragment is small Number of alignments=843 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLGK 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEGF T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 2yxxA 63 :GMDVVTKGELLAAKLAGVPSHTVVWNGNGKSR T0547 140 :INIGF 2yxxA 95 :DQMEH T0547 146 :AAEMGHNI 2yxxA 100 :FLREDVRI T0547 155 :LTIEGLNELEAIIDIAKER 2yxxA 108 :VNVDSFEEMEIWRELNPEG T0547 178 :PNIGLRVRLH 2yxxA 127 :VEYFIRVNPE T0547 188 :SAGVGIWAKSGGINSKFGLTSTELIEAVNLL 2yxxA 138 :DAKTHPHISTGLKKHKFGIPLEDLDSFMERF T0547 222 :KLL 2yxxA 169 :RSM T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 172 :NIRGLHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEY 2yxxA 205 :GFEEINIGGGWGINY T0547 284 :NEKSR 2yxxA 220 :SGEEL T0547 291 :TLREYAN 2yxxA 225 :DLSSYRE T0547 306 :IAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 2yxxA 232 :KVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHN T0547 346 :ENKLILKKQNPKLIDE 2yxxA 271 :KAFVVVDGGMNVLIRP T0547 362 :LYDLYKSIKPSNALE 2yxxA 288 :LYSAYHRIFVLGKQG T0547 378 :LHDSIDHLESILTLFDLGYVD 2yxxA 303 :KEMRADVVGPLCESGDVIAYD T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTT T0547 429 :LLAIQ 2yxxA 358 :AEVLV T0547 434 :DEVQERYLVNFSLFQSMPDFW 2yxxA 364 :ENGRISLIRRRETEMDIFKDV Number of specific fragments extracted= 20 number of extra gaps= 0 total=18549 Will force an alignment to be made, even if fragment is small Number of alignments=844 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (2yxxA)D2 Warning: unaligning (T0547)N459 because last residue in template chain is (2yxxA)M386 T0547 31 :IIDIVKEL 2yxxA 3 :ILRKVAEI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 11 :HGTPTYVYFEETLRKRSRLVKEVFE T0547 77 :G 2yxxA 36 :G T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGN T0547 135 :KDRELINIGF 2yxxA 92 :KSRDQMEHFL T0547 148 :EMGHNIT 2yxxA 102 :REDVRIV T0547 156 :TIEGLNELEAIIDIAKE 2yxxA 109 :NVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLHSAGVGIWAKSGG 2yxxA 126 :GVEYFIRVNPEVDAKTHPHISTG T0547 200 :INSKFGLTSTELIEAVNLLKENK 2yxxA 150 :KKHKFGIPLEDLDSFMERFRSMN T0547 224 :LE 2yxxA 173 :IR T0547 228 :T 2yxxA 175 :G T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 176 :LHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFKN 2yxxA 205 :GFEEINIGGGWGINYSGEEL T0547 291 :TLREYANDVVFILKNIA 2yxxA 225 :DLSSYREKVVPDLKRFK T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQEYAE 2yxxA 242 :RVIVEIGRYIVAPSGYLLLRVVLVKRRHNKA T0547 348 :KLILKK 2yxxA 273 :FVVVDG T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2yxxA 280 :MNVLIRPALYSAYHRIFVLGKQG T0547 377 :YLHDSIDHLESILTLFDLGY 2yxxA 305 :MRADVVGPLCESGDVIAYDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2yxxA 325 :ELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 20 number of extra gaps= 0 total=18569 Will force an alignment to be made, even if fragment is small Number of alignments=845 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)P29 because first residue in template chain is (2yxxA)D2 Warning: unaligning (T0547)N459 because last residue in template chain is (2yxxA)M386 T0547 30 :AIIDIVKE 2yxxA 3 :ILRKVAEI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 11 :HGTPTYVYFEETLRKRSRLVKEVFE T0547 77 :G 2yxxA 36 :G T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEGF T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2yxxA 63 :GMDVVTKGELLAAKLAGVPSHTVVWNGN T0547 135 :KDRELINIGF 2yxxA 92 :KSRDQMEHFL T0547 148 :EMGHNIT 2yxxA 102 :REDVRIV T0547 156 :TIEGLNELEAIID 2yxxA 109 :NVDSFEEMEIWRE T0547 174 :FK 2yxxA 125 :EG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 2yxxA 127 :VEYFIRVNPEVDAKTHPHISTG T0547 200 :INSKFGLTSTELIEAVNLLKENK 2yxxA 150 :KKHKFGIPLEDLDSFMERFRSMN T0547 226 :QFT 2yxxA 173 :IRG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTE 2yxxA 176 :LHVHIGSQITRVEPFVEAFSKVVRASER T0547 263 :A 2yxxA 204 :Y T0547 265 :NLKAINLGGGLAVEYSQFKN 2yxxA 205 :GFEEINIGGGWGINYSGEEL T0547 291 :TLREYANDVVFILK 2yxxA 225 :DLSSYREKVVPDLK T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2yxxA 239 :RFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKA T0547 348 :KLILKK 2yxxA 273 :FVVVDG T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2yxxA 280 :MNVLIRPALYSAYHRIFVLGKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2yxxA 305 :MRADVVGPLCESGDVIAYDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 21 number of extra gaps= 0 total=18590 Will force an alignment to be made, even if fragment is small Number of alignments=846 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)M2 because first residue in template chain is (2yxxA)D2 Warning: unaligning (T0547)N459 because last residue in template chain is (2yxxA)M386 T0547 3 :D 2yxxA 3 :I T0547 31 :IIDIVKE 2yxxA 4 :LRKVAEI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 2yxxA 11 :HGTPTYVYFEETLRKRSRLVKEVFEG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 37 :VNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGN T0547 135 :KDRELINIGF 2yxxA 92 :KSRDQMEHFL T0547 148 :EMGHNIT 2yxxA 102 :REDVRIV T0547 156 :TIEGLNELEAIIDIAK 2yxxA 109 :NVDSFEEMEIWRELNP T0547 174 :FK 2yxxA 125 :EG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 2yxxA 127 :VEYFIRVNPEVDAKTHPHISTG T0547 200 :INSKFGLTSTELIEAVNLLK 2yxxA 150 :KKHKFGIPLEDLDSFMERFR T0547 222 :K 2yxxA 170 :S T0547 224 :LEQFT 2yxxA 171 :MNIRG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 176 :LHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFKN 2yxxA 205 :GFEEINIGGGWGINYSGEEL T0547 291 :TLREYANDVVFILKNI 2yxxA 225 :DLSSYREKVVPDLKRF T0547 313 :L 2yxxA 241 :K T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQEYAE 2yxxA 242 :RVIVEIGRYIVAPSGYLLLRVVLVKRRHNKA T0547 348 :KLILKK 2yxxA 273 :FVVVDG T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2yxxA 280 :MNVLIRPALYSAYHRIFVLGKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2yxxA 305 :MRADVVGPLCESGDVIAYDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 22 number of extra gaps= 0 total=18612 Will force an alignment to be made, even if fragment is small Number of alignments=847 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)D33 because first residue in template chain is (2yxxA)D2 Warning: unaligning (T0547)N459 because last residue in template chain is (2yxxA)M386 T0547 34 :IVKE 2yxxA 3 :ILRK T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNF 2yxxA 7 :VAEIHGTPTYVYFEETLRKRSRLVKEVF T0547 77 :G 2yxxA 35 :E T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEGF T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2yxxA 63 :GMDVVTKGELLAAKLAGVPSHTVVWNGN T0547 135 :KDRELINIGF 2yxxA 92 :KSRDQMEHFL T0547 148 :EMGHNIT 2yxxA 102 :REDVRIV T0547 156 :TIEGLNELEAIIDIAK 2yxxA 109 :NVDSFEEMEIWRELNP T0547 174 :FK 2yxxA 125 :EG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 2yxxA 127 :VEYFIRVNPEVDAKTHPHISTG T0547 200 :INSKFGLTSTELIEAVNL 2yxxA 150 :KKHKFGIPLEDLDSFMER T0547 221 :NKLLEQFT 2yxxA 168 :FRSMNIRG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 176 :LHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFKN 2yxxA 205 :GFEEINIGGGWGINYSGEEL T0547 291 :TLREYANDVVFILKNI 2yxxA 225 :DLSSYREKVVPDLKRF T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2yxxA 241 :KRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKA T0547 348 :KLILKK 2yxxA 273 :FVVVDG T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2yxxA 280 :MNVLIRPALYSAYHRIFVLGKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2yxxA 305 :MRADVVGPLCESGDVIAYDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 20 number of extra gaps= 0 total=18632 Will force an alignment to be made, even if fragment is small Number of alignments=848 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)P29 because first residue in template chain is (2yxxA)D2 T0547 30 :AIIDIVKE 2yxxA 3 :ILRKVAEI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 11 :HGTPTYVYFEETLRKRSRLVKEVFE T0547 77 :G 2yxxA 36 :G T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGN T0547 135 :KDRELINIGF 2yxxA 92 :KSRDQMEHFL T0547 148 :EMGHNIT 2yxxA 102 :REDVRIV T0547 156 :TIEGLNELEAIIDI 2yxxA 109 :NVDSFEEMEIWREL T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2yxxA 123 :NPEGVEYFIRVNPEVDAKTHPHISTG T0547 200 :INSKFGLTSTELIEAVNLLK 2yxxA 150 :KKHKFGIPLEDLDSFMERFR T0547 222 :K 2yxxA 170 :S T0547 224 :LEQFT 2yxxA 171 :MNIRG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 176 :LHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFKN 2yxxA 205 :GFEEINIGGGWGINYSGEEL T0547 291 :TLREYANDV 2yxxA 225 :DLSSYREKV T0547 307 :AEQKK 2yxxA 234 :VPDLK T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2yxxA 239 :RFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKA T0547 348 :KLILKK 2yxxA 273 :FVVVDG T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2yxxA 280 :MNVLIRPALYSAYHRIFVLGKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2yxxA 305 :MRADVVGPLCESGDVIAYDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDV T0547 610 :GV 2yxxA 385 :VM Number of specific fragments extracted= 22 number of extra gaps= 0 total=18654 Will force an alignment to be made, even if fragment is small Number of alignments=849 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)P29 because first residue in template chain is (2yxxA)D2 Warning: unaligning (T0547)N459 because last residue in template chain is (2yxxA)M386 T0547 30 :AIIDIVKE 2yxxA 3 :ILRKVAEI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2yxxA 11 :HGTPTYVYFEETLRKRSRLVKEVF T0547 77 :G 2yxxA 35 :E T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEGF T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2yxxA 63 :GMDVVTKGELLAAKLAGVPSHTVVWNGN T0547 135 :KDRELINIGF 2yxxA 92 :KSRDQMEHFL T0547 148 :EMGHNIT 2yxxA 102 :REDVRIV T0547 156 :TIEGLNELEAIIDI 2yxxA 109 :NVDSFEEMEIWREL T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2yxxA 123 :NPEGVEYFIRVNPEVDAKTHPHISTG T0547 200 :INSKFGLTSTELIEAVNL 2yxxA 150 :KKHKFGIPLEDLDSFMER T0547 221 :NKLLEQFT 2yxxA 168 :FRSMNIRG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 176 :LHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFKN 2yxxA 205 :GFEEINIGGGWGINYSGEEL T0547 291 :TLREYANDV 2yxxA 225 :DLSSYREKV T0547 307 :AEQKK 2yxxA 234 :VPDLK T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2yxxA 239 :RFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKA T0547 348 :KLILKK 2yxxA 273 :FVVVDG T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2yxxA 280 :MNVLIRPALYSAYHRIFVLGKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2yxxA 305 :MRADVVGPLCESGDVIAYDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 20 number of extra gaps= 0 total=18674 Will force an alignment to be made, even if fragment is small Number of alignments=850 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 34 :IVKEL 2yxxA 6 :KVAEI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 11 :HGTPTYVYFEETLRKRSRLVKEVFE T0547 77 :G 2yxxA 36 :G T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGN T0547 135 :KDRELINIGF 2yxxA 92 :KSRDQMEHFL T0547 148 :EMGHNIT 2yxxA 102 :REDVRIV T0547 156 :TIEGLNELEAIIDIAKE 2yxxA 109 :NVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLHSAGVGIWAKSGG 2yxxA 126 :GVEYFIRVNPEVDAKTHPHISTG T0547 200 :INSKFGLTSTELIEAVNLLKENK 2yxxA 150 :KKHKFGIPLEDLDSFMERFRSMN T0547 224 :LE 2yxxA 173 :IR T0547 228 :T 2yxxA 175 :G T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 176 :LHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFKN 2yxxA 205 :GFEEINIGGGWGINYSGEEL T0547 291 :TLREYANDVVFILKNIA 2yxxA 225 :DLSSYREKVVPDLKRFK T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQEYAE 2yxxA 242 :RVIVEIGRYIVAPSGYLLLRVVLVKRRHNKA T0547 348 :KLILKK 2yxxA 273 :FVVVDG T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2yxxA 280 :MNVLIRPALYSAYHRIFVLGKQG T0547 377 :YLHDSIDHLESILTLFDLGY 2yxxA 305 :MRADVVGPLCESGDVIAYDR T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWG 2yxxA 325 :ELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFK Number of specific fragments extracted= 20 number of extra gaps= 0 total=18694 Will force an alignment to be made, even if fragment is small Number of alignments=851 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 31 :IIDIVKE 2yxxA 4 :LRKVAEI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 11 :HGTPTYVYFEETLRKRSRLVKEVFE T0547 77 :G 2yxxA 36 :G T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEGF T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2yxxA 63 :GMDVVTKGELLAAKLAGVPSHTVVWNGN T0547 135 :KDRELINIGF 2yxxA 92 :KSRDQMEHFL T0547 148 :EMGHNIT 2yxxA 102 :REDVRIV T0547 156 :TIEGLNELEAIID 2yxxA 109 :NVDSFEEMEIWRE T0547 174 :FK 2yxxA 125 :EG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 2yxxA 127 :VEYFIRVNPEVDAKTHPHISTG T0547 200 :INSKFGLTSTELIEAVNLLKENK 2yxxA 150 :KKHKFGIPLEDLDSFMERFRSMN T0547 226 :QFT 2yxxA 173 :IRG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTE 2yxxA 176 :LHVHIGSQITRVEPFVEAFSKVVRASER T0547 263 :A 2yxxA 204 :Y T0547 265 :NLKAINLGGGLAVEYSQFKN 2yxxA 205 :GFEEINIGGGWGINYSGEEL T0547 291 :TLREYANDVVFILK 2yxxA 225 :DLSSYREKVVPDLK T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2yxxA 239 :RFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKA T0547 348 :KLILKK 2yxxA 273 :FVVVDG T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2yxxA 280 :MNVLIRPALYSAYHRIFVLGKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2yxxA 305 :MRADVVGPLCESGDVIAYDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGL 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKD Number of specific fragments extracted= 21 number of extra gaps= 0 total=18715 Will force an alignment to be made, even if fragment is small Number of alignments=852 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 31 :IIDIVKE 2yxxA 4 :LRKVAEI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 2yxxA 11 :HGTPTYVYFEETLRKRSRLVKEVFEG T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 37 :VNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGN T0547 135 :KDRELINIGF 2yxxA 92 :KSRDQMEHFL T0547 148 :EMGHNIT 2yxxA 102 :REDVRIV T0547 156 :TIEGLNELEAIIDIAK 2yxxA 109 :NVDSFEEMEIWRELNP T0547 174 :FK 2yxxA 125 :EG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 2yxxA 127 :VEYFIRVNPEVDAKTHPHISTG T0547 200 :INSKFGLTSTELIEAVNLLK 2yxxA 150 :KKHKFGIPLEDLDSFMERFR T0547 222 :K 2yxxA 170 :S T0547 224 :LEQFT 2yxxA 171 :MNIRG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 176 :LHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFKN 2yxxA 205 :GFEEINIGGGWGINYSGEEL T0547 291 :TLREYANDVVFILKNI 2yxxA 225 :DLSSYREKVVPDLKRF T0547 313 :L 2yxxA 241 :K T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQEYAE 2yxxA 242 :RVIVEIGRYIVAPSGYLLLRVVLVKRRHNKA T0547 348 :KLILKK 2yxxA 273 :FVVVDG T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2yxxA 280 :MNVLIRPALYSAYHRIFVLGKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2yxxA 305 :MRADVVGPLCESGDVIAYDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWG 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFK Number of specific fragments extracted= 21 number of extra gaps= 0 total=18736 Will force an alignment to be made, even if fragment is small Number of alignments=853 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 32 :IDIVKE 2yxxA 5 :RKVAEI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2yxxA 11 :HGTPTYVYFEETLRKRSRLVKEVF T0547 77 :G 2yxxA 35 :E T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEGF T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2yxxA 63 :GMDVVTKGELLAAKLAGVPSHTVVWNGN T0547 135 :KDRELINIGF 2yxxA 92 :KSRDQMEHFL T0547 148 :EMGHNIT 2yxxA 102 :REDVRIV T0547 156 :TIEGLNELEAIIDIAK 2yxxA 109 :NVDSFEEMEIWRELNP T0547 174 :FK 2yxxA 125 :EG T0547 178 :PNIGLRVRLHSAGVGIWAKSGG 2yxxA 127 :VEYFIRVNPEVDAKTHPHISTG T0547 200 :INSKFGLTSTELIEAVNL 2yxxA 150 :KKHKFGIPLEDLDSFMER T0547 221 :NKLLEQFT 2yxxA 168 :FRSMNIRG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 176 :LHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFKN 2yxxA 205 :GFEEINIGGGWGINYSGEEL T0547 291 :TLREYANDVVFILKNI 2yxxA 225 :DLSSYREKVVPDLKRF T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2yxxA 241 :KRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKA T0547 348 :KLILKK 2yxxA 273 :FVVVDG T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2yxxA 280 :MNVLIRPALYSAYHRIFVLGKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2yxxA 305 :MRADVVGPLCESGDVIAYDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGL 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKD Number of specific fragments extracted= 20 number of extra gaps= 0 total=18756 Will force an alignment to be made, even if fragment is small Number of alignments=854 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 30 :AIIDIVKE 2yxxA 3 :ILRKVAEI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 11 :HGTPTYVYFEETLRKRSRLVKEVFE T0547 77 :G 2yxxA 36 :G T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGN T0547 135 :KDRELINIGF 2yxxA 92 :KSRDQMEHFL T0547 148 :EMGHNIT 2yxxA 102 :REDVRIV T0547 156 :TIEGLNELEAIIDI 2yxxA 109 :NVDSFEEMEIWREL T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2yxxA 123 :NPEGVEYFIRVNPEVDAKTHPHISTG T0547 200 :INSKFGLTSTELIEAVNLLK 2yxxA 150 :KKHKFGIPLEDLDSFMERFR T0547 222 :K 2yxxA 170 :S T0547 224 :LEQFT 2yxxA 171 :MNIRG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 176 :LHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFKN 2yxxA 205 :GFEEINIGGGWGINYSGEEL T0547 291 :TLREYANDV 2yxxA 225 :DLSSYREKV T0547 307 :AEQKK 2yxxA 234 :VPDLK T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2yxxA 239 :RFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKA T0547 348 :KLILKK 2yxxA 273 :FVVVDG T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2yxxA 280 :MNVLIRPALYSAYHRIFVLGKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2yxxA 305 :MRADVVGPLCESGDVIAYDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWG 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFK Number of specific fragments extracted= 21 number of extra gaps= 0 total=18777 Will force an alignment to be made, even if fragment is small Number of alignments=855 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 31 :IIDIVKE 2yxxA 4 :LRKVAEI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 2yxxA 11 :HGTPTYVYFEETLRKRSRLVKEVF T0547 77 :G 2yxxA 35 :E T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEGF T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGF 2yxxA 63 :GMDVVTKGELLAAKLAGVPSHTVVWNGN T0547 135 :KDRELINIGF 2yxxA 92 :KSRDQMEHFL T0547 148 :EMGHNIT 2yxxA 102 :REDVRIV T0547 156 :TIEGLNELEAIIDI 2yxxA 109 :NVDSFEEMEIWREL T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKSGG 2yxxA 123 :NPEGVEYFIRVNPEVDAKTHPHISTG T0547 200 :INSKFGLTSTELIEAVNL 2yxxA 150 :KKHKFGIPLEDLDSFMER T0547 221 :NKLLEQFT 2yxxA 168 :FRSMNIRG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 176 :LHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFKN 2yxxA 205 :GFEEINIGGGWGINYSGEEL T0547 291 :TLREYANDV 2yxxA 225 :DLSSYREKV T0547 307 :AEQKK 2yxxA 234 :VPDLK T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQEYAE 2yxxA 239 :RFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKA T0547 348 :KLILKK 2yxxA 273 :FVVVDG T0547 354 :QNPKLIDELYDLYKSIKPSNALE 2yxxA 280 :MNVLIRPALYSAYHRIFVLGKQG T0547 377 :YLHDSIDHLESILTLFDLGYV 2yxxA 305 :MRADVVGPLCESGDVIAYDRE T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGL 2yxxA 326 :LPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKD Number of specific fragments extracted= 20 number of extra gaps= 0 total=18797 Will force an alignment to be made, even if fragment is small Number of alignments=856 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)I34 because first residue in template chain is (2yxxA)D2 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEGV T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVR T0547 154 :TLTIEGLNELEAIIDIAKE 2yxxA 107 :IVNVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLHSAGVGI 2yxxA 126 :GVEYFIRVNPEVDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2yxxA 144 :HISTGLKKHKFGIPLEDLDSFMERFRSMN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYT 2yxxA 173 :IRGLHVHIGSQITRVEPFVEAFSKVVRASE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 2yxxA 203 :RYGFEEINIGGGWGINYSGEELDLS T0547 294 :EYANDVVFI 2yxxA 228 :SYREKVVPD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALE 2yxxA 237 :LKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGKQG T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 2yxxA 303 :KEMRADVVGPLCESGDVIAYDRELP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2yxxA 329 :VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVR T0547 438 :ERYLVNFSLFQSMPDFWGLEQ 2yxxA 365 :NGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 13 number of extra gaps= 0 total=18810 Will force an alignment to be made, even if fragment is small Number of alignments=857 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)I34 because first residue in template chain is (2yxxA)D2 Warning: unaligning (T0547)F460 because last residue in template chain is (2yxxA)M386 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVR T0547 154 :TLTIEGLNELEAIID 2yxxA 107 :IVNVDSFEEMEIWRE T0547 174 :FKPKPNIGLRVRLHSAGVGI 2yxxA 123 :NPEGVEYFIRVNPEVDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLK 2yxxA 144 :HISTGLKKHKFGIPLEDLDSFMERFR T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYT 2yxxA 170 :SMNIRGLHVHIGSQITRVEPFVEAFSKVVRASE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2yxxA 203 :RYGFEEINIGGGWGINYSGEELDL T0547 299 :V 2yxxA 227 :S T0547 302 :ILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2yxxA 228 :SYREKVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVL T0547 374 :ALEYLHDSIDHLESILTLFDLGYVDLQDR 2yxxA 299 :GKQGKEMRADVVGPLCESGDVIAYDRELP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 2yxxA 329 :VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 12 number of extra gaps= 0 total=18822 Will force an alignment to be made, even if fragment is small Number of alignments=858 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)K27 because first residue in template chain is (2yxxA)D2 Warning: unaligning (T0547)F460 because last residue in template chain is (2yxxA)M386 T0547 28 :K 2yxxA 3 :I T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2yxxA 4 :LRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEGV T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVR T0547 154 :TLTIEGLNELEAIIDIAKE 2yxxA 107 :IVNVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLHSAGVGI 2yxxA 126 :GVEYFIRVNPEVDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLK 2yxxA 144 :HISTGLKKHKFGIPLEDLDSFMERFR T0547 222 :K 2yxxA 170 :S T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYT 2yxxA 171 :MNIRGLHVHIGSQITRVEPFVEAFSKVVRASE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2yxxA 203 :RYGFEEINIGGGWGINYSGEELDLSS T0547 295 :YANDVV 2yxxA 229 :YREKVV T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2yxxA 235 :PDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVL T0547 374 :ALEYLHDSIDHLESILTLFDLGYVDLQDR 2yxxA 299 :GKQGKEMRADVVGPLCESGDVIAYDRELP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 2yxxA 329 :VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 14 number of extra gaps= 0 total=18836 Will force an alignment to be made, even if fragment is small Number of alignments=859 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)I34 because first residue in template chain is (2yxxA)D2 Warning: unaligning (T0547)F460 because last residue in template chain is (2yxxA)M386 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEGV T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVR T0547 154 :TLTIEGLNELEAIIDIAKE 2yxxA 107 :IVNVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLHSAGVGI 2yxxA 126 :GVEYFIRVNPEVDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNL 2yxxA 144 :HISTGLKKHKFGIPLEDLDSFMER T0547 220 :ENK 2yxxA 168 :FRS T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYT 2yxxA 171 :MNIRGLHVHIGSQITRVEPFVEAFSKVVRASE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2yxxA 203 :RYGFEEINIGGGWGINYSGEELDLSS T0547 296 :A 2yxxA 229 :Y T0547 304 :KNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2yxxA 230 :REKVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVL T0547 375 :LEYLHDSIDHLESILTLFDLGYVDLQDR 2yxxA 300 :KQGKEMRADVVGPLCESGDVIAYDRELP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 2yxxA 329 :VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 13 number of extra gaps= 0 total=18849 Will force an alignment to be made, even if fragment is small Number of alignments=860 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)D33 because first residue in template chain is (2yxxA)D2 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVR T0547 154 :TLTIEGLNELEAIIDI 2yxxA 107 :IVNVDSFEEMEIWREL T0547 174 :FKPKPNIGLRVRLHSAGVGI 2yxxA 123 :NPEGVEYFIRVNPEVDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLL 2yxxA 144 :HISTGLKKHKFGIPLEDLDSFMERF T0547 221 :NK 2yxxA 169 :RS T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 171 :MNIRGLHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFKNEKSR 2yxxA 205 :GFEEINIGGGWGINYSGEELDLSS T0547 295 :Y 2yxxA 229 :Y T0547 304 :KNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2yxxA 230 :REKVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVL T0547 375 :LEYLHDSIDHLESILTLFDLGYVDLQDR 2yxxA 300 :KQGKEMRADVVGPLCESGDVIAYDRELP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 2yxxA 329 :VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 13 number of extra gaps= 0 total=18862 Will force an alignment to be made, even if fragment is small Number of alignments=861 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)I34 because first residue in template chain is (2yxxA)D2 Warning: unaligning (T0547)F460 because last residue in template chain is (2yxxA)M386 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVR T0547 154 :TLTIEGLNELEAIIDI 2yxxA 107 :IVNVDSFEEMEIWREL T0547 174 :FKPKPNIGLRVRLHSAGVGI 2yxxA 123 :NPEGVEYFIRVNPEVDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLL 2yxxA 144 :HISTGLKKHKFGIPLEDLDSFMERF T0547 221 :NK 2yxxA 169 :RS T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYT 2yxxA 171 :MNIRGLHVHIGSQITRVEPFVEAFSKVVRASE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2yxxA 203 :RYGFEEINIGGGWGINYSGEELDL T0547 301 :FILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2yxxA 227 :SSYREKVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVL T0547 375 :LEYLHDSIDHLESILTLFDLGYVDLQDR 2yxxA 300 :KQGKEMRADVVGPLCESGDVIAYDRELP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 2yxxA 329 :VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 12 number of extra gaps= 0 total=18874 Will force an alignment to be made, even if fragment is small Number of alignments=862 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 37 :ELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2yxxA 5 :RKVAEIHGTPTYVYFEETLRKRSRLVKEVFEGV T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVR T0547 154 :TLTIEGLNELEAIIDIAKE 2yxxA 107 :IVNVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLHSAGVGI 2yxxA 126 :GVEYFIRVNPEVDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLKENK 2yxxA 144 :HISTGLKKHKFGIPLEDLDSFMERFRSMN T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYT 2yxxA 173 :IRGLHVHIGSQITRVEPFVEAFSKVVRASE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKS 2yxxA 203 :RYGFEEINIGGGWGINYSGEELDLS T0547 294 :EYANDVVFI 2yxxA 228 :SYREKVVPD T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALE 2yxxA 237 :LKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGKQG T0547 378 :LHDSIDHLESILTLFDLGYVDLQDR 2yxxA 303 :KEMRADVVGPLCESGDVIAYDRELP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 2yxxA 329 :VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVR T0547 438 :ERYLVNFSLFQSMPDFW 2yxxA 365 :NGRISLIRRRETEMDIF Number of specific fragments extracted= 13 number of extra gaps= 0 total=18887 Will force an alignment to be made, even if fragment is small Number of alignments=863 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVR T0547 154 :TLTIEGLNELEAIID 2yxxA 107 :IVNVDSFEEMEIWRE T0547 174 :FKPKPNIGLRVRLHSAGVGI 2yxxA 123 :NPEGVEYFIRVNPEVDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLK 2yxxA 144 :HISTGLKKHKFGIPLEDLDSFMERFR T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYT 2yxxA 170 :SMNIRGLHVHIGSQITRVEPFVEAFSKVVRASE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2yxxA 203 :RYGFEEINIGGGWGINYSGEELDL T0547 299 :V 2yxxA 227 :S T0547 302 :ILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2yxxA 228 :SYREKVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVL T0547 374 :ALEYLHDSIDHLESILTLFDLGYVDLQDR 2yxxA 299 :GKQGKEMRADVVGPLCESGDVIAYDRELP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 2yxxA 329 :VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKD Number of specific fragments extracted= 12 number of extra gaps= 0 total=18899 Will force an alignment to be made, even if fragment is small Number of alignments=864 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 37 :ELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2yxxA 5 :RKVAEIHGTPTYVYFEETLRKRSRLVKEVFEGV T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVR T0547 154 :TLTIEGLNELEAIIDIAKE 2yxxA 107 :IVNVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLHSAGVGI 2yxxA 126 :GVEYFIRVNPEVDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLLK 2yxxA 144 :HISTGLKKHKFGIPLEDLDSFMERFR T0547 222 :K 2yxxA 170 :S T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYT 2yxxA 171 :MNIRGLHVHIGSQITRVEPFVEAFSKVVRASE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2yxxA 203 :RYGFEEINIGGGWGINYSGEELDLSS T0547 295 :YANDVV 2yxxA 229 :YREKVV T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2yxxA 235 :PDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVL T0547 374 :ALEYLHDSIDHLESILTLFDLGYVDLQDR 2yxxA 299 :GKQGKEMRADVVGPLCESGDVIAYDRELP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE 2yxxA 329 :VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKD Number of specific fragments extracted= 13 number of extra gaps= 0 total=18912 Will force an alignment to be made, even if fragment is small Number of alignments=865 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set Warning: unaligning (T0547)F460 because last residue in template chain is (2yxxA)M386 T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEGV T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 38 :NLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVR T0547 154 :TLTIEGLNELEAIIDIAKE 2yxxA 107 :IVNVDSFEEMEIWRELNPE T0547 177 :KPNIGLRVRLHSAGVGI 2yxxA 126 :GVEYFIRVNPEVDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNL 2yxxA 144 :HISTGLKKHKFGIPLEDLDSFMER T0547 220 :ENK 2yxxA 168 :FRS T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYT 2yxxA 171 :MNIRGLHVHIGSQITRVEPFVEAFSKVVRASE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEKSR 2yxxA 203 :RYGFEEINIGGGWGINYSGEELDLSS T0547 296 :A 2yxxA 229 :Y T0547 304 :KNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2yxxA 230 :REKVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVL T0547 375 :LEYLHDSIDHLESILTLFDLGYVDLQDR 2yxxA 300 :KQGKEMRADVVGPLCESGDVIAYDRELP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 2yxxA 329 :VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 13 number of extra gaps= 0 total=18925 Will force an alignment to be made, even if fragment is small Number of alignments=866 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 4 :LRKVAEIHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVR T0547 154 :TLTIEGLNELEAIIDI 2yxxA 107 :IVNVDSFEEMEIWREL T0547 174 :FKPKPNIGLRVRLHSAGVGI 2yxxA 123 :NPEGVEYFIRVNPEVDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLL 2yxxA 144 :HISTGLKKHKFGIPLEDLDSFMERF T0547 221 :NK 2yxxA 169 :RS T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 2yxxA 171 :MNIRGLHVHIGSQITRVEPFVEAFSKVVRASERY T0547 265 :NLKAINLGGGLAVEYSQFKNEKSR 2yxxA 205 :GFEEINIGGGWGINYSGEELDLSS T0547 295 :Y 2yxxA 229 :Y T0547 304 :KNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2yxxA 230 :REKVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVL T0547 375 :LEYLHDSIDHLESILTLFDLGYVDLQDR 2yxxA 300 :KQGKEMRADVVGPLCESGDVIAYDRELP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGL 2yxxA 329 :VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFK Number of specific fragments extracted= 13 number of extra gaps= 0 total=18938 Will force an alignment to be made, even if fragment is small Number of alignments=867 # 2yxxA read from all-align.a2m # found chain 2yxxA in template set T0547 35 :VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 2yxxA 3 :ILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFE T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLG 2yxxA 36 :GVNLLPTFAVKANNNPVLLKILREEG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 2yxxA 62 :FGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVR T0547 154 :TLTIEGLNELEAIIDI 2yxxA 107 :IVNVDSFEEMEIWREL T0547 174 :FKPKPNIGLRVRLHSAGVGI 2yxxA 123 :NPEGVEYFIRVNPEVDAKTH T0547 194 :WAKSGGINSKFGLTSTELIEAVNLL 2yxxA 144 :HISTGLKKHKFGIPLEDLDSFMERF T0547 221 :NK 2yxxA 169 :RS T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYT 2yxxA 171 :MNIRGLHVHIGSQITRVEPFVEAFSKVVRASE T0547 263 :AKNLKAINLGGGLAVEYSQFKNEK 2yxxA 203 :RYGFEEINIGGGWGINYSGEELDL T0547 301 :FILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPS 2yxxA 227 :SSYREKVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVL T0547 375 :LEYLHDSIDHLESILTLFDLGYVDLQDR 2yxxA 300 :KQGKEMRADVVGPLCESGDVIAYDRELP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQN 2yxxA 329 :VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVV Number of specific fragments extracted= 12 number of extra gaps= 0 total=18950 Will force an alignment to be made, even if fragment is small Number of alignments=868 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)I609 because last residue in template chain is (3co8A)V370 T0547 41 :DGYKGPL 3co8A 3 :EAIHRST T0547 54 :LIQKQIENIYGNFNKARKEFG 3co8A 10 :RIEFSKSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVN 3co8A 31 :AKTLWLAVKSN T0547 89 :QYPGFVKNLVKLG 3co8A 46 :GLLQVSKIARECG T0547 106 :YGLEAGSKAELLLAMAYN 3co8A 60 :DGLAVSVLDEGIAIRQAG T0547 125 :EGAPITVNGFKDRE 3co8A 78 :IDDFILILGPIDVK T0547 144 :FIAAEMGHNITLTIEGLNELEAIIDIA 3co8A 92 :YAPIASKYHFLTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVR 3co8A 119 :GKEKLSVNLAVD T0547 197 :SGG 3co8A 131 :TGM T0547 202 :SKFGLTS 3co8A 134 :NRIGVRS T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHL 3co8A 142 :KDLKDEIEFLQEHSDHFSYDGIFTHF T0547 249 :NEAGNIYTELRKMGAK 3co8A 179 :QRQKNRWYELIDGLIM T0547 266 :LKAINLGGGLAVEYSQFKNE 3co8A 195 :PRYVHVMNSGAAMYHSKELP T0547 292 :LREYANDVVFIL 3co8A 216 :CNSIARVGTVVY T0547 311 :KDLEPDIFIESGR 3co8A 228 :GVEPSEGVLGPID T0547 325 :VAANHAVLIAPVLELFSQE 3co8A 241 :KLKPVFELKSALTFVKKIP T0547 346 :ENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLE 3co8A 260 :AGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQDFQLLI T0547 541 :NEKGYEVEGIIEAQSILDTLE 3co8A 301 :DGQKCRQVGQIAMDQMMVALP T0547 563 :LDYDIHAIMDILNERISNSKLVNDKQ 3co8A 322 :HEYPIGTEVTLIGKSGKYENTLYDLH T0547 589 :KKHILGELYLFLNDNGYLKS 3co8A 350 :SGVPPWKITVAFSDRLKRMV Number of specific fragments extracted= 20 number of extra gaps= 0 total=18970 Will force an alignment to be made, even if fragment is small Number of alignments=869 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 54 :LIQKQIENIYGNFNKARKEFG 3co8A 10 :RIEFSKSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVN 3co8A 31 :AKTLWLAVKSN T0547 89 :QYPGFVKNLVKLG 3co8A 46 :GLLQVSKIARECG T0547 106 :YGLEAGSKAELLLAMAYN 3co8A 60 :DGLAVSVLDEGIAIRQAG T0547 125 :EGAPITVNGFKDRE 3co8A 78 :IDDFILILGPIDVK T0547 144 :FIAAEMGHNITLTIEGLNELEAIIDIA 3co8A 92 :YAPIASKYHFLTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVR 3co8A 119 :GKEKLSVNLAVD T0547 197 :SGG 3co8A 131 :TGM T0547 202 :SKFGLTS 3co8A 134 :NRIGVRS T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHL 3co8A 142 :KDLKDEIEFLQEHSDHFSYDGIFTHF T0547 249 :NEAGNIYTELRKMGAK 3co8A 179 :QRQKNRWYELIDGLIM T0547 266 :LKAINLGGGLAVEYSQFKNE 3co8A 195 :PRYVHVMNSGAAMYHSKELP T0547 291 :TLREYANDVVFIL 3co8A 215 :GCNSIARVGTVVY T0547 311 :KDLEPDIFIESGR 3co8A 228 :GVEPSEGVLGPID T0547 325 :VAANHAVLIAPVLELFSQE 3co8A 241 :KLKPVFELKSALTFVKKIP T0547 346 :ENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHL 3co8A 260 :AGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQDFQLL T0547 386 :ESILTLFDLGYVDL 3co8A 327 :GTEVTLIGKSGKYE Number of specific fragments extracted= 17 number of extra gaps= 0 total=18987 Will force an alignment to be made, even if fragment is small Number of alignments=870 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)I609 because last residue in template chain is (3co8A)V370 T0547 43 :YKGPLLLR 3co8A 6 :HRSTRIEF T0547 58 :QIENIYGNFNKARKEFG 3co8A 14 :SKSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVN 3co8A 31 :AKTLWLAVKSN T0547 89 :QYPGFVKNLVKLG 3co8A 46 :GLLQVSKIARECG T0547 105 :NYGLEAGSKAELLLAMAYNNE 3co8A 59 :VDGLAVSVLDEGIAIRQAGID T0547 127 :APITVNGFKDRELINIGF 3co8A 80 :DFILILGPIDVKYAPIAS T0547 147 :AE 3co8A 98 :KY T0547 152 :NITLTIEGLNELEAIIDIAKERF 3co8A 100 :HFLTTVSSLDWLKSADKILGKEK T0547 178 :PNIGLRVRLHS 3co8A 123 :LSVNLAVDTGM T0547 202 :SKFGL 3co8A 134 :NRIGV T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHL 3co8A 140 :SKKDLKDEIEFLQEHSDHFSYDGIFTHF T0547 249 :NEAGNIYTELRKMGA 3co8A 179 :QRQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRN 3co8A 194 :MPRYVHVMNSGAAMYHSKELPGCNS T0547 520 :QEVL 3co8A 236 :LGPI T0547 524 :GMKHNLF 3co8A 267 :GSKFVTS T0547 531 :THPTEAIISINEKGYEVEGIIEAQSILDTLED 3co8A 291 :AEYQDFQLLIDGQKCRQVGQIAMDQMMVALPH T0547 564 :DYDIHAIMDILNER 3co8A 323 :EYPIGTEVTLIGKS T0547 578 :ISNSKLVNDK 3co8A 341 :NTLYDLHKHS T0547 590 :KHILGELYLFLNDNGYLKS 3co8A 351 :GVPPWKITVAFSDRLKRMV Number of specific fragments extracted= 19 number of extra gaps= 0 total=19006 Will force an alignment to be made, even if fragment is small Number of alignments=871 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 59 :IENIYGNFNKARKEFG 3co8A 15 :KSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVN 3co8A 31 :AKTLWLAVKSN T0547 89 :QYPGFVKNLVKLG 3co8A 46 :GLLQVSKIARECG T0547 105 :NYGLEAGSKAELLLAMAYNNE 3co8A 59 :VDGLAVSVLDEGIAIRQAGID T0547 127 :APITVNGFKDRELINIGF 3co8A 80 :DFILILGPIDVKYAPIAS T0547 147 :AE 3co8A 98 :KY T0547 152 :NITLTIEGLNELEAIIDIAKERF 3co8A 100 :HFLTTVSSLDWLKSADKILGKEK T0547 178 :PNIGLRVRLHS 3co8A 123 :LSVNLAVDTGM T0547 202 :SKFGL 3co8A 134 :NRIGV T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHL 3co8A 140 :SKKDLKDEIEFLQEHSDHFSYDGIFTHF T0547 249 :NEAGNIYTELRKMGA 3co8A 179 :QRQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRN 3co8A 194 :MPRYVHVMNSGAAMYHSKELPGCNS T0547 302 :ILKNIAEQKKDLEPDIFIESGR 3co8A 219 :IARVGTVVYGVEPSEGVLGPID T0547 325 :VAANHAVLIAPVLELFSQ 3co8A 241 :KLKPVFELKSALTFVKKI T0547 343 :EYAENKLILKKQNPKLIDEL 3co8A 284 :GYGDGWLAEYQDFQLLIDGQ T0547 363 :YDLYKSIKPSN 3co8A 318 :VALPHEYPIGT Number of specific fragments extracted= 16 number of extra gaps= 0 total=19022 Will force an alignment to be made, even if fragment is small Number of alignments=872 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)H233 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 2 :MDYGIDIW 3co8A 3 :EAIHRSTR T0547 30 :AIID 3co8A 11 :IEFS T0547 59 :IENIYGNFNKARKEFG 3co8A 15 :KSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGKDYNYG 3co8A 31 :AKTLWLAVKSNAYGHGLLQVSKIARECGVD T0547 117 :LLAMAYNNEGAPITVNGFKDRELINI 3co8A 61 :GLAVSVLDEGIAIRQAGIDDFILILG T0547 143 :GFIAAEMGHNITLTIEGLNELEAIIDIA 3co8A 91 :KYAPIASKYHFLTTVSSLDWLKSADKIL T0547 178 :PNIGLRVRLHS 3co8A 119 :GKEKLSVNLAV T0547 196 :KSG 3co8A 130 :DTG T0547 201 :NSKFGLTSTELIEAVNLLK 3co8A 133 :MNRIGVRSKKDLKDEIEFL T0547 220 :ENKLLEQFTMIHF 3co8A 155 :SDHFSYDGIFTHF T0547 244 :LKKALNE 3co8A 179 :QRQKNRW T0547 415 :KAILLLGDKQNPADLLAIQDE 3co8A 192 :LIMPRYVHVMNSGAAMYHSKE T0547 436 :VQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRL 3co8A 216 :CNSIARVGTVVYGVEPSEGVLGPIDKLKPVFEL T0547 474 :RSASIWDITCDSDGEISYSKDK 3co8A 249 :KSALTFVKKIPAGEGISYGSKF T0547 504 :VEKENYFLGFFLVG 3co8A 271 :VTSRDTWIGTLPIG T0547 525 :MKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDL 3co8A 285 :YGDGWLAEYQDFQLLIDGQKCRQVGQIAMDQMMVALPHE T0547 565 :YDIHAIM 3co8A 324 :YPIGTEV T0547 572 :DILNERISNSKLV 3co8A 335 :KSGKYENTLYDLH T0547 587 :KQKKHILGELYLFLNDN 3co8A 348 :KHSGVPPWKITVAFSDR T0547 606 :LKSIGV 3co8A 365 :LKRMVV Number of specific fragments extracted= 20 number of extra gaps= 0 total=19042 Will force an alignment to be made, even if fragment is small Number of alignments=873 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)H233 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)P243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 106 :YGLEAGSKAELL 3co8A 43 :YGHGLLQVSKIA T0547 118 :LAMAYNNEGAPITVNGFKDRELINIGFI 3co8A 62 :LAVSVLDEGIAIRQAGIDDFILILGPID T0547 146 :AAEMGHNITLTIEGLNELEAIIDIA 3co8A 94 :PIASKYHFLTTVSSLDWLKSADKIL T0547 178 :PNIGLRVRLHS 3co8A 119 :GKEKLSVNLAV T0547 196 :KSG 3co8A 130 :DTG T0547 201 :NSKFGLTSTELIEAVNLLK 3co8A 133 :MNRIGVRSKKDLKDEIEFL T0547 220 :ENKLLEQFTMIHF 3co8A 155 :SDHFSYDGIFTHF T0547 244 :LKKALNE 3co8A 179 :QRQKNRW Number of specific fragments extracted= 8 number of extra gaps= 0 total=19050 Will force an alignment to be made, even if fragment is small Number of alignments=874 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)D3 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)N601 because last residue in template chain is (3co8A)V370 T0547 4 :YGIDIWGNENFIIKN 3co8A 3 :EAIHRSTRIEFSKSS T0547 55 :IQKQIENIYGNF 3co8A 18 :LAYNVQYTKQVS T0547 77 :GGFNAVYPLKVN 3co8A 30 :GAKTLWLAVKSN T0547 89 :QYPGFVKNLVKLGK 3co8A 46 :GLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILIL T0547 133 :GFKDRELINIG 3co8A 86 :GPIDVKYAPIA T0547 149 :MGHNITLTIEGLNELEAIIDIAKE 3co8A 97 :SKYHFLTTVSSLDWLKSADKILGK T0547 178 :PNIGLRVRLHSAGV 3co8A 121 :EKLSVNLAVDTGMN T0547 203 :KFGLTST 3co8A 135 :RIGVRSK T0547 210 :ELIEAVNLLKENKLLEQFTMIHFHL 3co8A 143 :DLKDEIEFLQEHSDHFSYDGIFTHF T0547 245 :KKALNEAGNIYTELRKMG 3co8A 179 :QRQKNRWYELIDGLIMPR T0547 265 :NLKAINLGG 3co8A 197 :YVHVMNSGA T0547 277 :VEY 3co8A 206 :AMY T0547 282 :FKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIES 3co8A 209 :HSKELPGCNSIARVGTVVYGVEPSEGVLGPIDKLKPVFEL T0547 327 :ANHAVLIAPVLELFSQEYAENKLI 3co8A 249 :KSALTFVKKIPAGEGISYGSKFVT T0547 362 :LYDLYKSIKPSNALEYLHD 3co8A 273 :SRDTWIGTLPIGYGDGWLA T0547 381 :SIDHLESILTLFDLGYVD 3co8A 297 :QLLIDGQKCRQVGQIAMD T0547 399 :LQ 3co8A 320 :LP T0547 401 :DRSNA 3co8A 323 :EYPIG T0547 506 :KENYFLG 3co8A 328 :TEVTLIG T0547 515 :LVGAYQEVLGMKHNLFTHPTEAIISINEKG 3co8A 335 :KSGKYENTLYDLHKHSGVPPWKITVAFSDR T0547 596 :LYLFL 3co8A 365 :LKRMV Number of specific fragments extracted= 22 number of extra gaps= 0 total=19072 Will force an alignment to be made, even if fragment is small Number of alignments=875 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)L468 because last residue in template chain is (3co8A)V370 T0547 41 :DGYKGP 3co8A 3 :EAIHRS T0547 47 :LLLRFPHLIQKQIENIYGNF 3co8A 10 :RIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVNQY 3co8A 30 :GAKTLWLAVKSNAY T0547 91 :PGFVKNLVKLGK 3co8A 48 :LQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGPIDVKY T0547 142 :IGF 3co8A 93 :API T0547 146 :AAEMGH 3co8A 96 :ASKYHF T0547 154 :TLTIEGLNELEAIIDI 3co8A 102 :LTTVSSLDWLKSADKI T0547 173 :RFKPKPNIGLRVRLH 3co8A 118 :LGKEKLSVNLAVDTG T0547 202 :SKFGL 3co8A 134 :NRIGV T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHL 3co8A 140 :SKKDLKDEIEFLQEHSDHFSYDGIFTHF T0547 249 :NEAGNIYTELRKMGA 3co8A 179 :QRQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEY 3co8A 194 :MPRYVHVMNSGAAMY T0547 282 :FKNEKSRNY 3co8A 209 :HSKELPGCN T0547 306 :IAEQKKDLEPDIFIESGRFV 3co8A 223 :GTVVYGVEPSEGVLGPIDKL T0547 327 :ANHAVLIAPVLELFSQEYA 3co8A 243 :KPVFELKSALTFVKKIPAG T0547 349 :LILKKQNPKLIDE 3co8A 262 :EGISYGSKFVTSR T0547 362 :LY 3co8A 276 :TW T0547 367 :KSIKPSNALE 3co8A 278 :IGTLPIGYGD T0547 381 :SIDHLESILT 3co8A 304 :KCRQVGQIAM T0547 393 :DLGYVDLQ 3co8A 314 :DQMMVALP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPAD 3co8A 323 :EYPIGTEVTLIGKSGKYENTLYDLHKHS T0547 449 :SMPDFWGLEQNFPIMPLDR 3co8A 351 :GVPPWKITVAFSDRLKRMV Number of specific fragments extracted= 23 number of extra gaps= 0 total=19095 Will force an alignment to be made, even if fragment is small Number of alignments=876 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)S445 because last residue in template chain is (3co8A)V370 T0547 41 :DGYKGPL 3co8A 3 :EAIHRST T0547 48 :LLRFPHLIQKQIENIYGNF 3co8A 11 :IEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVN 3co8A 30 :GAKTLWLAVKSN T0547 89 :QYPGFVKNLVKLGK 3co8A 46 :GLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNG 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGP T0547 136 :DRE 3co8A 88 :IDV T0547 140 :INIGF 3co8A 91 :KYAPI T0547 146 :AAEMG 3co8A 96 :ASKYH T0547 153 :ITLTIEGLNELEAIIDIA 3co8A 101 :FLTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLH 3co8A 119 :GKEKLSVNLAVDTG T0547 202 :SKFGLTS 3co8A 134 :NRIGVRS T0547 209 :TELIEAVNLLKEN 3co8A 142 :KDLKDEIEFLQEH T0547 222 :KLLE 3co8A 156 :DHFS T0547 227 :FTMIHFHL 3co8A 160 :YDGIFTHF T0547 246 :K 3co8A 179 :Q T0547 250 :EAGNIYTELRKMGA 3co8A 180 :RQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEY 3co8A 194 :MPRYVHVMNSGAAMY T0547 282 :FKN 3co8A 209 :HSK T0547 291 :TLREYANDV 3co8A 212 :ELPGCNSIA T0547 302 :ILKN 3co8A 226 :VYGV T0547 313 :LEPDIFIESGRFV 3co8A 230 :EPSEGVLGPIDKL T0547 327 :ANHAVLIAPVLELFSQEYA 3co8A 243 :KPVFELKSALTFVKKIPAG T0547 349 :LILKKQNPKLIDE 3co8A 262 :EGISYGSKFVTSR T0547 362 :LYDLYKSIKPS 3co8A 276 :TWIGTLPIGYG T0547 374 :AL 3co8A 289 :WL T0547 377 :YLHDSIDHLESILT 3co8A 300 :IDGQKCRQVGQIAM T0547 393 :DLGYVDL 3co8A 314 :DQMMVAL T0547 400 :QDRSNAEILTHLITKKAILLLGDKQN 3co8A 322 :HEYPIGTEVTLIGKSGKYENTLYDLH T0547 426 :PAD 3co8A 349 :HSG T0547 429 :LLAIQDEVQERYLVNF 3co8A 354 :PWKITVAFSDRLKRMV Number of specific fragments extracted= 30 number of extra gaps= 0 total=19125 Will force an alignment to be made, even if fragment is small Number of alignments=877 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)I540 because last residue in template chain is (3co8A)V370 T0547 41 :DGYKGPL 3co8A 3 :EAIHRST T0547 48 :LLRFPHLIQKQIENIYGNF 3co8A 11 :IEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVN 3co8A 30 :GAKTLWLAVKSN T0547 89 :QYPGFVKNLVKLGK 3co8A 46 :GLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILG T0547 135 :KDRE 3co8A 87 :PIDV T0547 140 :INIGF 3co8A 91 :KYAPI T0547 146 :AAEMG 3co8A 96 :ASKYH T0547 153 :ITLTIEGLNELEAIIDIA 3co8A 101 :FLTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLH 3co8A 119 :GKEKLSVNLAVDTG T0547 202 :SKFGL 3co8A 134 :NRIGV T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHL 3co8A 140 :SKKDLKDEIEFLQEHSDHFSYDGIFTHF T0547 249 :NEAGNIYTEL 3co8A 179 :QRQKNRWYEL T0547 260 :KMGAKNLKAINLGGGLAVEY 3co8A 189 :IDGLIMPRYVHVMNSGAAMY T0547 282 :FKNEKSRNYTLR 3co8A 213 :LPGCNSIARVGT T0547 308 :EQKKDLEPDIFIESGRFV 3co8A 225 :VVYGVEPSEGVLGPIDKL T0547 327 :ANHAVLIAPVLELFSQEYA 3co8A 243 :KPVFELKSALTFVKKIPAG T0547 349 :LILKKQNPKLIDE 3co8A 262 :EGISYGSKFVTSR T0547 362 :LY 3co8A 276 :TW T0547 367 :KSIKPSNALE 3co8A 278 :IGTLPIGYGD T0547 378 :LHDSIDHLESILT 3co8A 301 :DGQKCRQVGQIAM T0547 393 :DLGYVDLQ 3co8A 314 :DQMMVALP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 3co8A 323 :EYPIGTEVTLIGKSGKYENTLYDLH T0547 426 :PADLLAIQDEVQERYLV 3co8A 351 :GVPPWKITVAFSDRLKR T0547 538 :IS 3co8A 368 :MV Number of specific fragments extracted= 25 number of extra gaps= 0 total=19150 Will force an alignment to be made, even if fragment is small Number of alignments=878 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)D3 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)I609 because last residue in template chain is (3co8A)V370 T0547 24 :N 3co8A 3 :E T0547 42 :GYKGP 3co8A 4 :AIHRS T0547 47 :LLLRFPHLIQKQIENIYGNF 3co8A 10 :RIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVN 3co8A 30 :GAKTLWLAVKSN T0547 89 :QYPGFVKNLVKLGK 3co8A 46 :GLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGPIDVKY T0547 142 :IGF 3co8A 93 :API T0547 146 :AAEMG 3co8A 96 :ASKYH T0547 153 :ITLTIEGLNELEAIIDIA 3co8A 101 :FLTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLHS 3co8A 119 :GKEKLSVNLAVDTGM T0547 202 :SKFGLTS 3co8A 134 :NRIGVRS T0547 209 :TELIEAVNLLKEN 3co8A 142 :KDLKDEIEFLQEH T0547 222 :KLL 3co8A 156 :DHF T0547 226 :QFTMIHFHL 3co8A 159 :SYDGIFTHF T0547 249 :NEAGNIYTELRKMGA 3co8A 179 :QRQKNRWYELIDGLI T0547 265 :NLKAINLGG 3co8A 194 :MPRYVHVMN T0547 279 :Y 3co8A 208 :Y T0547 282 :FKNEKSR 3co8A 209 :HSKELPG T0547 314 :EPD 3co8A 216 :CNS T0547 318 :FIESGRFVAA 3co8A 219 :IARVGTVVYG T0547 328 :NHAVLIAPVLELFSQEYAE 3co8A 244 :PVFELKSALTFVKKIPAGE T0547 350 :ILKKQNPKLIDE 3co8A 263 :GISYGSKFVTSR T0547 382 :I 3co8A 276 :T T0547 416 :AILLLGD 3co8A 277 :WIGTLPI T0547 445 :SLFQSMPDFW 3co8A 284 :GYGDGWLAEY T0547 485 :SDGEI 3co8A 294 :QDFQL T0547 491 :YSKDKPLFLHD 3co8A 299 :LIDGQKCRQVG T0547 530 :FTHPTEAIISINEK 3co8A 310 :QIAMDQMMVALPHE T0547 544 :G 3co8A 327 :G T0547 545 :YEVEGIIEAQS 3co8A 330 :VTLIGKSGKYE T0547 556 :ILDTLEDLDYDI 3co8A 343 :LYDLHKHSGVPP T0547 594 :GELYLFLNDNGYLKS 3co8A 355 :WKITVAFSDRLKRMV Number of specific fragments extracted= 32 number of extra gaps= 0 total=19182 Will force an alignment to be made, even if fragment is small Number of alignments=879 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)L465 because last residue in template chain is (3co8A)V370 T0547 41 :DGYKGP 3co8A 3 :EAIHRS T0547 47 :LLLRFPHLIQKQIENIYGNF 3co8A 10 :RIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVN 3co8A 30 :GAKTLWLAVKSN T0547 89 :QYPGFVKNLVKLGK 3co8A 46 :GLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGPIDV T0547 140 :INIGF 3co8A 91 :KYAPI T0547 146 :AAEMG 3co8A 96 :ASKYH T0547 153 :ITLTIEGLNELEAIIDIA 3co8A 101 :FLTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLH 3co8A 119 :GKEKLSVNLAVDTG T0547 202 :SKFGLTST 3co8A 134 :NRIGVRSK T0547 210 :ELIEAVNLLKENKLLEQFTMIHFHL 3co8A 143 :DLKDEIEFLQEHSDHFSYDGIFTHF T0547 249 :NEAGNIYTELRKMGA 3co8A 179 :QRQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEY 3co8A 194 :MPRYVHVMNSGAAMY T0547 282 :FKNEKSRNYT 3co8A 209 :HSKELPGCNS T0547 307 :AEQKKDLEPDIFIESGRFV 3co8A 224 :TVVYGVEPSEGVLGPIDKL T0547 327 :ANHAVLIAPVLELFSQEYA 3co8A 243 :KPVFELKSALTFVKKIPAG T0547 349 :LILKKQNPKLIDE 3co8A 262 :EGISYGSKFVTSR T0547 362 :LY 3co8A 276 :TW T0547 370 :KPSNALE 3co8A 281 :LPIGYGD T0547 377 :YLHDSIDHLESIL 3co8A 300 :IDGQKCRQVGQIA T0547 392 :FDLGYVD 3co8A 313 :MDQMMVA T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 3co8A 321 :PHEYPIGTEVTLIGKSGKYENTLYDLHKHS T0547 429 :LLAIQ 3co8A 354 :PWKIT T0547 442 :VN 3co8A 359 :VA T0547 456 :LEQNFPIMP 3co8A 361 :FSDRLKRMV Number of specific fragments extracted= 25 number of extra gaps= 0 total=19207 Will force an alignment to be made, even if fragment is small Number of alignments=880 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 90 :YPGFVKNLVKLGK 3co8A 47 :LLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILIL T0547 133 :GFKDRELINIG 3co8A 86 :GPIDVKYAPIA T0547 149 :MGHNITLTIEGLNELEAIIDIAKE 3co8A 97 :SKYHFLTTVSSLDWLKSADKILGK T0547 178 :PNIGLRVRLHSAGV 3co8A 121 :EKLSVNLAVDTGMN T0547 203 :KFGLTST 3co8A 135 :RIGVRSK T0547 210 :ELIEAVNLLKENKLLEQFTMIHFHL 3co8A 143 :DLKDEIEFLQEHSDHFSYDGIFTHF T0547 245 :KKALNEAGNIYTELRKMG 3co8A 179 :QRQKNRWYELIDGLIMPR T0547 265 :NLKAINLGG 3co8A 197 :YVHVMNSGA T0547 277 :VEY 3co8A 206 :AMY T0547 282 :FKNEKSRNYTLREYANDVV 3co8A 209 :HSKELPGCNSIARVGTVVY Number of specific fragments extracted= 11 number of extra gaps= 0 total=19218 Will force an alignment to be made, even if fragment is small Number of alignments=881 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 41 :DGYKGP 3co8A 3 :EAIHRS T0547 47 :LLLRFPHLIQKQIENIYGNF 3co8A 10 :RIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVNQY 3co8A 30 :GAKTLWLAVKSNAY T0547 91 :PGFVKNLVKLGK 3co8A 48 :LQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGPIDVKY T0547 142 :IGF 3co8A 93 :API T0547 146 :AAEMGH 3co8A 96 :ASKYHF T0547 154 :TLTIEGLNELEAIIDI 3co8A 102 :LTTVSSLDWLKSADKI T0547 173 :RFKPKPNIGLRVRLH 3co8A 118 :LGKEKLSVNLAVDTG T0547 202 :SKFGL 3co8A 134 :NRIGV T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHL 3co8A 140 :SKKDLKDEIEFLQEHSDHFSYDGIFTHF T0547 249 :NEAGNIYTELRKMGA 3co8A 179 :QRQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEY 3co8A 194 :MPRYVHVMNSGAAMY T0547 282 :FKNEKSRNY 3co8A 209 :HSKELPGCN T0547 306 :IAEQKKDLEPDIFIESGRFV 3co8A 223 :GTVVYGVEPSEGVLGPIDKL T0547 327 :ANHAVLIAPVLELFSQEYA 3co8A 243 :KPVFELKSALTFVKKIPAG T0547 349 :LILKKQNPKLIDE 3co8A 262 :EGISYGSKFVTSR T0547 362 :LY 3co8A 276 :TW T0547 367 :KSIKPSNALE 3co8A 278 :IGTLPIGYGD T0547 381 :SIDHLESILT 3co8A 304 :KCRQVGQIAM T0547 393 :DLGYVDLQ 3co8A 314 :DQMMVALP T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPAD 3co8A 323 :EYPIGTEVTLIGKSGKYENTLYDLHKHS T0547 449 :SMPDFWGLEQNFPIMP 3co8A 351 :GVPPWKITVAFSDRLK Number of specific fragments extracted= 23 number of extra gaps= 0 total=19241 Will force an alignment to be made, even if fragment is small Number of alignments=882 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 42 :GYKGPL 3co8A 4 :AIHRST T0547 48 :LLRFPHLIQKQIENIYGNF 3co8A 11 :IEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVN 3co8A 30 :GAKTLWLAVKSN T0547 89 :QYPGFVKNLVKLGK 3co8A 46 :GLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNG 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGP T0547 136 :DRE 3co8A 88 :IDV T0547 140 :INIGF 3co8A 91 :KYAPI T0547 146 :AAEMG 3co8A 96 :ASKYH T0547 153 :ITLTIEGLNELEAIIDIA 3co8A 101 :FLTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLH 3co8A 119 :GKEKLSVNLAVDTG T0547 202 :SKFGLTS 3co8A 134 :NRIGVRS T0547 209 :TELIEAVNLLKEN 3co8A 142 :KDLKDEIEFLQEH T0547 222 :KLLE 3co8A 156 :DHFS T0547 227 :FTMIHFHL 3co8A 160 :YDGIFTHF T0547 246 :K 3co8A 179 :Q T0547 250 :EAGNIYTELRKMGA 3co8A 180 :RQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEY 3co8A 194 :MPRYVHVMNSGAAMY T0547 282 :FKN 3co8A 209 :HSK T0547 291 :TLREYANDV 3co8A 212 :ELPGCNSIA T0547 302 :ILKN 3co8A 226 :VYGV T0547 313 :LEPDIFIESGRFV 3co8A 230 :EPSEGVLGPIDKL T0547 327 :ANHAVLIAPVLELFSQEYA 3co8A 243 :KPVFELKSALTFVKKIPAG T0547 349 :LILKKQNPKLIDE 3co8A 262 :EGISYGSKFVTSR T0547 362 :LYDLYKSIKPS 3co8A 276 :TWIGTLPIGYG T0547 374 :AL 3co8A 289 :WL T0547 377 :YLHDSIDHLESILT 3co8A 300 :IDGQKCRQVGQIAM T0547 393 :DLGYVDL 3co8A 314 :DQMMVAL T0547 400 :QDRSNAEILTHLITKKAILLLGDKQN 3co8A 322 :HEYPIGTEVTLIGKSGKYENTLYDLH T0547 426 :PAD 3co8A 349 :HSG T0547 429 :LLAIQDEVQERYL 3co8A 354 :PWKITVAFSDRLK Number of specific fragments extracted= 30 number of extra gaps= 0 total=19271 Will force an alignment to be made, even if fragment is small Number of alignments=883 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 42 :GYKGPL 3co8A 4 :AIHRST T0547 48 :LLRFPHLIQKQIENIYGNF 3co8A 11 :IEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVN 3co8A 30 :GAKTLWLAVKSN T0547 89 :QYPGFVKNLVKLGK 3co8A 46 :GLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILG T0547 135 :KDRE 3co8A 87 :PIDV T0547 140 :INIGF 3co8A 91 :KYAPI T0547 146 :AAEMG 3co8A 96 :ASKYH T0547 153 :ITLTIEGLNELEAIIDIA 3co8A 101 :FLTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLH 3co8A 119 :GKEKLSVNLAVDTG T0547 202 :SKFGL 3co8A 134 :NRIGV T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHL 3co8A 140 :SKKDLKDEIEFLQEHSDHFSYDGIFTHF T0547 249 :NEAGNIYTEL 3co8A 179 :QRQKNRWYEL T0547 260 :KMGAKNLKAINLGGGLAVEY 3co8A 189 :IDGLIMPRYVHVMNSGAAMY T0547 282 :FKNEKSRNYTLR 3co8A 213 :LPGCNSIARVGT T0547 308 :EQKKDLEPDIFIESGRFV 3co8A 225 :VVYGVEPSEGVLGPIDKL T0547 327 :ANHAVLIAPVLELFSQEYA 3co8A 243 :KPVFELKSALTFVKKIPAG T0547 349 :LILKKQNPKLIDE 3co8A 262 :EGISYGSKFVTSR T0547 362 :LY 3co8A 276 :TW T0547 367 :KSIKPSNALE 3co8A 278 :IGTLPIGYGD T0547 378 :LHDSIDHLESILT 3co8A 301 :DGQKCRQVGQIAM T0547 393 :DLGYVDLQ 3co8A 314 :DQMMVALP T0547 401 :DRSNAEILTHLITKKAILLLGDKQN 3co8A 323 :EYPIGTEVTLIGKSGKYENTLYDLH T0547 426 :PADLLAIQDEVQERYLV 3co8A 351 :GVPPWKITVAFSDRLKR Number of specific fragments extracted= 24 number of extra gaps= 0 total=19295 Will force an alignment to be made, even if fragment is small Number of alignments=884 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 T0547 44 :KGP 3co8A 6 :HRS T0547 47 :LLLRFPHLIQKQIENIYGNF 3co8A 10 :RIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVN 3co8A 30 :GAKTLWLAVKSN T0547 89 :QYPGFVKNLVKLGK 3co8A 46 :GLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGPIDVKY T0547 142 :IGF 3co8A 93 :API T0547 146 :AAEMG 3co8A 96 :ASKYH T0547 153 :ITLTIEGLNELEAIIDIA 3co8A 101 :FLTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLHS 3co8A 119 :GKEKLSVNLAVDTGM T0547 202 :SKFGLTS 3co8A 134 :NRIGVRS T0547 209 :TELIEAVNLLKEN 3co8A 142 :KDLKDEIEFLQEH T0547 222 :KLL 3co8A 156 :DHF T0547 226 :QFTMIHFHL 3co8A 159 :SYDGIFTHF T0547 249 :NEAGNIYTELRKMGA 3co8A 179 :QRQKNRWYELIDGLI T0547 265 :NLKAINLGG 3co8A 194 :MPRYVHVMN T0547 279 :Y 3co8A 208 :Y T0547 282 :FKNEKSR 3co8A 209 :HSKELPG T0547 314 :EPD 3co8A 216 :CNS T0547 318 :FIESGRFVAA 3co8A 219 :IARVGTVVYG T0547 328 :NHAVLIAPVLELFSQ 3co8A 244 :PVFELKSALTFVKKI T0547 343 :EYAENKLILK 3co8A 273 :SRDTWIGTLP T0547 353 :KQNPKLIDELY 3co8A 284 :GYGDGWLAEYQ T0547 376 :E 3co8A 295 :D T0547 377 :YLHDSIDHLESILT 3co8A 300 :IDGQKCRQVGQIAM T0547 393 :DLGYVD 3co8A 314 :DQMMVA T0547 399 :LQDRSNAEILTHL 3co8A 321 :PHEYPIGTEVTLI Number of specific fragments extracted= 26 number of extra gaps= 0 total=19321 Will force an alignment to be made, even if fragment is small Number of alignments=885 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 42 :GYKGP 3co8A 4 :AIHRS T0547 47 :LLLRFPHLIQKQIENIYGNF 3co8A 10 :RIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVN 3co8A 30 :GAKTLWLAVKSN T0547 89 :QYPGFVKNLVKLGK 3co8A 46 :GLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGPIDV T0547 140 :INIGF 3co8A 91 :KYAPI T0547 146 :AAEMG 3co8A 96 :ASKYH T0547 153 :ITLTIEGLNELEAIIDIA 3co8A 101 :FLTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLH 3co8A 119 :GKEKLSVNLAVDTG T0547 202 :SKFGLTST 3co8A 134 :NRIGVRSK T0547 210 :ELIEAVNLLKENKLLEQFTMIHFHL 3co8A 143 :DLKDEIEFLQEHSDHFSYDGIFTHF T0547 249 :NEAGNIYTELRKMGA 3co8A 179 :QRQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEY 3co8A 194 :MPRYVHVMNSGAAMY T0547 282 :FKNEKSRNYT 3co8A 209 :HSKELPGCNS T0547 307 :AEQKKDLEPDIFIESGRFV 3co8A 224 :TVVYGVEPSEGVLGPIDKL T0547 327 :ANHAVLIAPVLELFSQEYA 3co8A 243 :KPVFELKSALTFVKKIPAG T0547 349 :LILKKQNPKLIDE 3co8A 262 :EGISYGSKFVTSR T0547 362 :LY 3co8A 276 :TW T0547 370 :KPSNALE 3co8A 281 :LPIGYGD T0547 377 :YLHDSIDHLESIL 3co8A 300 :IDGQKCRQVGQIA T0547 392 :FDLGYVD 3co8A 313 :MDQMMVA T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQ 3co8A 321 :PHEYPIGTEVTLIGKSGKYENTLYDL Number of specific fragments extracted= 22 number of extra gaps= 0 total=19343 Will force an alignment to be made, even if fragment is small Number of alignments=886 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)I31 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)S445 because last residue in template chain is (3co8A)V370 T0547 32 :IDIVKELRD 3co8A 3 :EAIHRSTRI T0547 50 :RFPHLIQKQIENIYGNF 3co8A 13 :FSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVNQYPG 3co8A 30 :GAKTLWLAVKSNAYGH T0547 93 :FVKNLVKLGK 3co8A 50 :VSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNE 3co8A 60 :DGLAVSVLDEGIAIRQAGID T0547 127 :APITVNGFKDRELINIGF 3co8A 80 :DFILILGPIDVKYAPIAS T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3co8A 98 :KYHFLTTVSSLDWLKSADKILGK T0547 178 :PNIGLRVRLHSAGV 3co8A 121 :EKLSVNLAVDTGMN T0547 203 :KFGLTS 3co8A 135 :RIGVRS T0547 209 :TELIEAVNLLKEN 3co8A 142 :KDLKDEIEFLQEH T0547 222 :KLLEQFT 3co8A 156 :DHFSYDG T0547 230 :IHFHL 3co8A 163 :IFTHF T0547 245 :KKALNEAGNIYTELRKMG 3co8A 179 :QRQKNRWYELIDGLIMPR T0547 265 :NLKAINLGG 3co8A 197 :YVHVMNSGA T0547 277 :VEYSQFKNE 3co8A 206 :AMYHSKELP T0547 291 :TLREYAN 3co8A 215 :GCNSIAR T0547 299 :VVFILKNIAEQKKDLEPDIFIE 3co8A 222 :VGTVVYGVEPSEGVLGPIDKLK T0547 328 :NHAVLIAPVLELFSQE 3co8A 244 :PVFELKSALTFVKKIP T0547 344 :YAE 3co8A 267 :GSK T0547 348 :KLILKKQNPKLIDELYD 3co8A 270 :FVTSRDTWIGTLPIGYG T0547 368 :SIKPSNALEYLHDSIDHLESILTLFDLGYV 3co8A 287 :DGWLAEYQDFQLLIDGQKCRQVGQIAMDQM T0547 398 :DLQ 3co8A 319 :ALP T0547 401 :DRSNAEILT 3co8A 323 :EYPIGTEVT T0547 410 :HLITKKAILLL 3co8A 333 :IGKSGKYENTL T0547 421 :GDKQNPADLLAIQDEVQERYLVNF 3co8A 346 :LHKHSGVPPWKITVAFSDRLKRMV Number of specific fragments extracted= 25 number of extra gaps= 0 total=19368 Will force an alignment to be made, even if fragment is small Number of alignments=887 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)D3 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)L465 because last residue in template chain is (3co8A)V370 T0547 41 :DG 3co8A 3 :EA T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3co8A 6 :HRSTRIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVNQY 3co8A 30 :GAKTLWLAVKSNAY T0547 91 :PGFVKNLVKLGK 3co8A 48 :LQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNE 3co8A 60 :DGLAVSVLDEGIAIRQAGID T0547 127 :APITVNGFKDRELINIGF 3co8A 80 :DFILILGPIDVKYAPIAS T0547 148 :E 3co8A 98 :K T0547 151 :HNITLTIEGLNELEAIIDI 3co8A 99 :YHFLTTVSSLDWLKSADKI T0547 173 :RFKPKPNIGLRV 3co8A 118 :LGKEKLSVNLAV T0547 187 :HSAGV 3co8A 130 :DTGMN T0547 203 :KFGL 3co8A 135 :RIGV T0547 207 :TSTELIEAVNLLKENK 3co8A 140 :SKKDLKDEIEFLQEHS T0547 223 :LLEQFT 3co8A 157 :HFSYDG T0547 230 :IHFHL 3co8A 163 :IFTHF T0547 249 :NEAGNIYTELRKMGA 3co8A 179 :QRQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRNY 3co8A 194 :MPRYVHVMNSGAAMYHSKELPGCNSI T0547 306 :IAEQKKDLEPDIFIESGRFV 3co8A 223 :GTVVYGVEPSEGVLGPIDKL T0547 327 :ANHAVLIAPVLELFSQE 3co8A 243 :KPVFELKSALTFVKKIP T0547 344 :YAENKLILKK 3co8A 274 :RDTWIGTLPI T0547 354 :QNPKLIDEL 3co8A 285 :YGDGWLAEY T0547 373 :NALE 3co8A 294 :QDFQ T0547 377 :YLHDSIDHLE 3co8A 303 :QKCRQVGQIA T0547 389 :LTLFDLGY 3co8A 313 :MDQMMVAL T0547 399 :LQDRSNAEILTHLITKKAILL 3co8A 321 :PHEYPIGTEVTLIGKSGKYEN T0547 429 :LLAIQDEVQERYL 3co8A 342 :TLYDLHKHSGVPP T0547 450 :MPDFWGLEQNFPIMP 3co8A 355 :WKITVAFSDRLKRMV Number of specific fragments extracted= 26 number of extra gaps= 0 total=19394 Will force an alignment to be made, even if fragment is small Number of alignments=888 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)D3 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)N541 because last residue in template chain is (3co8A)V370 T0547 4 :Y 3co8A 3 :E T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 3co8A 5 :IHRSTRIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVNQY 3co8A 30 :GAKTLWLAVKSNAY T0547 91 :PGFVKNLVKLGK 3co8A 48 :LQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNE 3co8A 60 :DGLAVSVLDEGIAIRQAGID T0547 127 :APITVNGFKDRELINIGF 3co8A 80 :DFILILGPIDVKYAPIAS T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3co8A 98 :KYHFLTTVSSLDWLKSADKILGK T0547 174 :FK 3co8A 121 :EK T0547 178 :PNIGLRVR 3co8A 123 :LSVNLAVD T0547 188 :SAGV 3co8A 131 :TGMN T0547 203 :KFGL 3co8A 135 :RIGV T0547 207 :TSTELIEAVNLLKEN 3co8A 140 :SKKDLKDEIEFLQEH T0547 222 :KLLEQFT 3co8A 156 :DHFSYDG T0547 230 :IHFHL 3co8A 163 :IFTHF T0547 246 :K 3co8A 179 :Q T0547 250 :EAGNIYTELRKMGA 3co8A 180 :RQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEYSQF 3co8A 194 :MPRYVHVMNSGAAMYHSK T0547 291 :TLREYANDVVFI 3co8A 212 :ELPGCNSIARVG T0547 303 :LKN 3co8A 227 :YGV T0547 313 :LEPDIFIESGRFV 3co8A 230 :EPSEGVLGPIDKL T0547 327 :ANHAVLIAPVLELFSQE 3co8A 243 :KPVFELKSALTFVKKIP T0547 344 :YAENKLILKK 3co8A 274 :RDTWIGTLPI T0547 354 :QNPKLIDELYDLYKSI 3co8A 285 :YGDGWLAEYQDFQLLI T0547 377 :YLHDSIDHLE 3co8A 303 :QKCRQVGQIA T0547 389 :LTLFDLGY 3co8A 313 :MDQMMVAL T0547 399 :LQDRSNAEILTHLITKKAILLL 3co8A 321 :PHEYPIGTEVTLIGKSGKYENT T0547 429 :LLAIQDEVQERYLVNFSLFQS 3co8A 343 :LYDLHKHSGVPPWKITVAFSD T0547 459 :N 3co8A 364 :R T0547 536 :AIISI 3co8A 365 :LKRMV Number of specific fragments extracted= 29 number of extra gaps= 0 total=19423 Will force an alignment to be made, even if fragment is small Number of alignments=889 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)I540 because last residue in template chain is (3co8A)V370 T0547 29 :PAI 3co8A 3 :EAI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3co8A 6 :HRSTRIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVN 3co8A 30 :GAKTLWLAVKSN T0547 89 :QYPGFVKNLVKLGK 3co8A 46 :GLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNE 3co8A 60 :DGLAVSVLDEGIAIRQAGID T0547 127 :APITVNGFKDRELINIGF 3co8A 80 :DFILILGPIDVKYAPIAS T0547 148 :EMGH 3co8A 98 :KYHF T0547 154 :TLTIEGLNELEAIIDIAKE 3co8A 102 :LTTVSSLDWLKSADKILGK T0547 174 :FK 3co8A 121 :EK T0547 178 :PNIGLRVRLHS 3co8A 123 :LSVNLAVDTGM T0547 202 :SKFGL 3co8A 134 :NRIGV T0547 207 :TSTELIEAVNLLKENKL 3co8A 140 :SKKDLKDEIEFLQEHSD T0547 224 :LEQFT 3co8A 158 :FSYDG T0547 230 :IHFHL 3co8A 163 :IFTHF T0547 249 :NEAGNIYTELRKMGA 3co8A 179 :QRQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEYSQ 3co8A 194 :MPRYVHVMNSGAAMYHS T0547 282 :FKNEK 3co8A 220 :ARVGT T0547 308 :EQKKDLEPDIFIESGRFV 3co8A 225 :VVYGVEPSEGVLGPIDKL T0547 327 :ANHAVLIAPVLELFSQE 3co8A 243 :KPVFELKSALTFVKKIP T0547 344 :YAENKLILKK 3co8A 274 :RDTWIGTLPI T0547 354 :QNPKLIDELYD 3co8A 285 :YGDGWLAEYQD T0547 375 :LE 3co8A 296 :FQ T0547 377 :YLHDSIDHLE 3co8A 303 :QKCRQVGQIA T0547 389 :LTLFDLGY 3co8A 313 :MDQMMVAL T0547 399 :LQDRSNAEILTHLITKKAILL 3co8A 321 :PHEYPIGTEVTLIGKSGKYEN T0547 429 :LLAIQDEVQER 3co8A 342 :TLYDLHKHSGV T0547 449 :SMPDFWGL 3co8A 353 :PPWKITVA T0547 531 :THPTEAIIS 3co8A 361 :FSDRLKRMV Number of specific fragments extracted= 28 number of extra gaps= 0 total=19451 Will force an alignment to be made, even if fragment is small Number of alignments=890 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)D3 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)I241 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)I609 because last residue in template chain is (3co8A)V370 T0547 4 :Y 3co8A 3 :E T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 3co8A 5 :IHRSTRIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKV 3co8A 30 :GAKTLWLAVKS T0547 88 :NQYPGFVKNLVKLGK 3co8A 45 :HGLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNE 3co8A 60 :DGLAVSVLDEGIAIRQAGID T0547 127 :APITVNGFKDRELINIGF 3co8A 80 :DFILILGPIDVKYAPIAS T0547 148 :EMGH 3co8A 98 :KYHF T0547 154 :TLTIEGLNELEAIIDIAKE 3co8A 102 :LTTVSSLDWLKSADKILGK T0547 176 :PKPNIGLRV 3co8A 121 :EKLSVNLAV T0547 187 :HSAGV 3co8A 130 :DTGMN T0547 203 :KFGL 3co8A 135 :RIGV T0547 207 :TSTELIEAVNLLKEN 3co8A 140 :SKKDLKDEIEFLQEH T0547 222 :KLLEQFT 3co8A 156 :DHFSYDG T0547 230 :IHFHL 3co8A 163 :IFTHF T0547 242 :HPL 3co8A 179 :QRQ T0547 252 :GNIYTELRKMGA 3co8A 182 :KNRWYELIDGLI T0547 265 :NLKAINLGG 3co8A 194 :MPRYVHVMN T0547 300 :VFILKNIAEQKK 3co8A 203 :SGAAMYHSKELP T0547 313 :LEPDIFI 3co8A 215 :GCNSIAR T0547 321 :SGRFVAAN 3co8A 222 :VGTVVYGV T0547 329 :HAVLIAPVLELFSQE 3co8A 245 :VFELKSALTFVKKIP T0547 344 :YAENKLILKK 3co8A 274 :RDTWIGTLPI T0547 354 :QNPKLIDELYD 3co8A 285 :YGDGWLAEYQD T0547 375 :LE 3co8A 296 :FQ T0547 377 :YLHDSIDHLES 3co8A 303 :QKCRQVGQIAM T0547 395 :GYV 3co8A 314 :DQM T0547 399 :LQDRSNAEILTHLITK 3co8A 321 :PHEYPIGTEVTLIGKS T0547 437 :QERYL 3co8A 337 :GKYEN T0547 555 :SILDTLEDLDYDI 3co8A 342 :TLYDLHKHSGVPP T0547 594 :GELYLFLNDNGYLKS 3co8A 355 :WKITVAFSDRLKRMV Number of specific fragments extracted= 30 number of extra gaps= 0 total=19481 Will force an alignment to be made, even if fragment is small Number of alignments=891 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)L465 because last residue in template chain is (3co8A)V370 T0547 1 :MMDY 3co8A 2 :LEAI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3co8A 6 :HRSTRIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVNQY 3co8A 30 :GAKTLWLAVKSNAY T0547 91 :PGFVKNLVKLGK 3co8A 48 :LQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNE 3co8A 60 :DGLAVSVLDEGIAIRQAGID T0547 127 :APITVNGFKDRELINIGF 3co8A 80 :DFILILGPIDVKYAPIAS T0547 148 :EMGH 3co8A 98 :KYHF T0547 154 :TLTIEGLNELEAIIDIAKE 3co8A 102 :LTTVSSLDWLKSADKILGK T0547 174 :FK 3co8A 121 :EK T0547 178 :PNIGLRV 3co8A 123 :LSVNLAV T0547 187 :HSAGV 3co8A 130 :DTGMN T0547 203 :KFGL 3co8A 135 :RIGV T0547 207 :TSTELIEAVNLLKENKL 3co8A 140 :SKKDLKDEIEFLQEHSD T0547 224 :LEQFT 3co8A 158 :FSYDG T0547 230 :IHFHL 3co8A 163 :IFTHF T0547 249 :NEAGNIYTELRKMGA 3co8A 179 :QRQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEYSQFKNE 3co8A 194 :MPRYVHVMNSGAAMYHSKELP T0547 313 :LEPDIFI 3co8A 215 :GCNSIAR T0547 320 :ESGRFV 3co8A 237 :GPIDKL T0547 327 :ANHAVLIAPVLELFSQE 3co8A 243 :KPVFELKSALTFVKKIP T0547 344 :YAENKLILKK 3co8A 274 :RDTWIGTLPI T0547 354 :QNPKLIDEL 3co8A 285 :YGDGWLAEY T0547 373 :NALE 3co8A 294 :QDFQ T0547 377 :YLHDSIDHLE 3co8A 303 :QKCRQVGQIA T0547 389 :LTLFDLGY 3co8A 313 :MDQMMVAL T0547 399 :LQDRSNAEILTHLITKKAILL 3co8A 321 :PHEYPIGTEVTLIGKSGKYEN T0547 429 :LLAIQDEVQERYL 3co8A 342 :TLYDLHKHSGVPP T0547 450 :MPDFWGLEQNFPIMP 3co8A 355 :WKITVAFSDRLKRMV Number of specific fragments extracted= 28 number of extra gaps= 0 total=19509 Will force an alignment to be made, even if fragment is small Number of alignments=892 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 54 :LIQKQIENIYGNF 3co8A 17 :SLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVNQYPG 3co8A 30 :GAKTLWLAVKSNAYGH T0547 93 :FVKNLVKLGK 3co8A 50 :VSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNE 3co8A 60 :DGLAVSVLDEGIAIRQAGID T0547 127 :APITVNGFKDRELINIGF 3co8A 80 :DFILILGPIDVKYAPIAS T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3co8A 98 :KYHFLTTVSSLDWLKSADKILGK T0547 178 :PNIGLRVRLHSAGV 3co8A 121 :EKLSVNLAVDTGMN T0547 203 :KFGLTS 3co8A 135 :RIGVRS T0547 209 :TELIEAVNLLKEN 3co8A 142 :KDLKDEIEFLQEH T0547 222 :KLLEQFT 3co8A 156 :DHFSYDG T0547 230 :IHFHL 3co8A 163 :IFTHF T0547 245 :KKALNEAGNIYTELRKMG 3co8A 179 :QRQKNRWYELIDGLIMPR T0547 265 :NLKAINLGG 3co8A 197 :YVHVMNSGA T0547 277 :VEYSQFKNE 3co8A 206 :AMYHSKELP T0547 291 :TLREYAN 3co8A 215 :GCNSIAR T0547 299 :VVFILKNIAEQKKDLEPDIFIE 3co8A 222 :VGTVVYGVEPSEGVLGPIDKLK T0547 328 :NHAVLIAPVLELFSQE 3co8A 244 :PVFELKSALTFVKKIP T0547 344 :YAE 3co8A 267 :GSK T0547 348 :KLILKKQNPKLIDELYD 3co8A 270 :FVTSRDTWIGTLPIGYG T0547 368 :SIKPSNALEYLHDSIDHLESILTLFDLGYV 3co8A 287 :DGWLAEYQDFQLLIDGQKCRQVGQIAMDQM T0547 398 :DLQ 3co8A 319 :ALP T0547 401 :DRSNAEILT 3co8A 323 :EYPIGTEVT T0547 410 :HLITKKAILLL 3co8A 333 :IGKSGKYENTL T0547 421 :GDKQNPADLLAIQDEVQERY 3co8A 346 :LHKHSGVPPWKITVAFSDRL Number of specific fragments extracted= 24 number of extra gaps= 0 total=19533 Will force an alignment to be made, even if fragment is small Number of alignments=893 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3co8A 6 :HRSTRIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVNQY 3co8A 30 :GAKTLWLAVKSNAY T0547 91 :PGFVKNLVKLGK 3co8A 48 :LQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNE 3co8A 60 :DGLAVSVLDEGIAIRQAGID T0547 127 :APITVNGFKDRELINIGF 3co8A 80 :DFILILGPIDVKYAPIAS T0547 148 :E 3co8A 98 :K T0547 151 :HNITLTIEGLNELEAIIDI 3co8A 99 :YHFLTTVSSLDWLKSADKI T0547 173 :RFKPKPNIGLRV 3co8A 118 :LGKEKLSVNLAV T0547 187 :HSAGV 3co8A 130 :DTGMN T0547 203 :KFGL 3co8A 135 :RIGV T0547 207 :TSTELIEAVNLLKENK 3co8A 140 :SKKDLKDEIEFLQEHS T0547 223 :LLEQFT 3co8A 157 :HFSYDG T0547 230 :IHFHL 3co8A 163 :IFTHF T0547 249 :NEAGNIYTELRKMGA 3co8A 179 :QRQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRNY 3co8A 194 :MPRYVHVMNSGAAMYHSKELPGCNSI T0547 306 :IAEQKKDLEPDIFIESGRFV 3co8A 223 :GTVVYGVEPSEGVLGPIDKL T0547 327 :ANHAVLIAPVLELFSQE 3co8A 243 :KPVFELKSALTFVKKIP T0547 344 :YAENKLILKK 3co8A 274 :RDTWIGTLPI T0547 354 :QNPKLIDEL 3co8A 285 :YGDGWLAEY T0547 373 :NALE 3co8A 294 :QDFQ T0547 377 :YLHDSIDHLE 3co8A 303 :QKCRQVGQIA T0547 389 :LTLFDLGY 3co8A 313 :MDQMMVAL T0547 399 :LQDRSNAEILTHLITKKAILL 3co8A 321 :PHEYPIGTEVTLIGKSGKYEN T0547 429 :LLAIQDEVQE 3co8A 342 :TLYDLHKHSG T0547 554 :QSILDTLEDL 3co8A 352 :VPPWKITVAF Number of specific fragments extracted= 25 number of extra gaps= 0 total=19558 Will force an alignment to be made, even if fragment is small Number of alignments=894 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3co8A 6 :HRSTRIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVNQY 3co8A 30 :GAKTLWLAVKSNAY T0547 91 :PGFVKNLVKLGK 3co8A 48 :LQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNE 3co8A 60 :DGLAVSVLDEGIAIRQAGID T0547 127 :APITVNGFKDRELINIGF 3co8A 80 :DFILILGPIDVKYAPIAS T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3co8A 98 :KYHFLTTVSSLDWLKSADKILGK T0547 174 :FK 3co8A 121 :EK T0547 178 :PNIGLRVR 3co8A 123 :LSVNLAVD T0547 188 :SAGV 3co8A 131 :TGMN T0547 203 :KFGL 3co8A 135 :RIGV T0547 207 :TSTELIEAVNLLKEN 3co8A 140 :SKKDLKDEIEFLQEH T0547 222 :KLLEQFT 3co8A 156 :DHFSYDG T0547 230 :IHFHL 3co8A 163 :IFTHF T0547 246 :K 3co8A 179 :Q T0547 250 :EAGNIYTELRKMGA 3co8A 180 :RQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEYSQF 3co8A 194 :MPRYVHVMNSGAAMYHSK T0547 291 :TLREYANDVVFI 3co8A 212 :ELPGCNSIARVG T0547 303 :LKN 3co8A 227 :YGV T0547 313 :LEPDIFIESGRFV 3co8A 230 :EPSEGVLGPIDKL T0547 327 :ANHAVLIAPVLELFSQE 3co8A 243 :KPVFELKSALTFVKKIP T0547 344 :YAENKLILKK 3co8A 274 :RDTWIGTLPI T0547 354 :QNPKLIDELYDLYKSI 3co8A 285 :YGDGWLAEYQDFQLLI T0547 377 :YLHDSIDHLE 3co8A 303 :QKCRQVGQIA T0547 389 :LTLFDLGY 3co8A 313 :MDQMMVAL T0547 399 :LQDRSNAEILTHLITKKAILLL 3co8A 321 :PHEYPIGTEVTLIGKSGKYENT T0547 429 :LLAIQDEVQERYLVNFSL 3co8A 343 :LYDLHKHSGVPPWKITVA Number of specific fragments extracted= 26 number of extra gaps= 0 total=19584 Will force an alignment to be made, even if fragment is small Number of alignments=895 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3co8A 6 :HRSTRIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVN 3co8A 30 :GAKTLWLAVKSN T0547 89 :QYPGFVKNLVKLGK 3co8A 46 :GLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNE 3co8A 60 :DGLAVSVLDEGIAIRQAGID T0547 127 :APITVNGFKDRELINIGF 3co8A 80 :DFILILGPIDVKYAPIAS T0547 148 :EMGH 3co8A 98 :KYHF T0547 154 :TLTIEGLNELEAIIDIAKE 3co8A 102 :LTTVSSLDWLKSADKILGK T0547 174 :FK 3co8A 121 :EK T0547 178 :PNIGLRVRLHS 3co8A 123 :LSVNLAVDTGM T0547 202 :SKFGL 3co8A 134 :NRIGV T0547 207 :TSTELIEAVNLLKENKL 3co8A 140 :SKKDLKDEIEFLQEHSD T0547 224 :LEQFT 3co8A 158 :FSYDG T0547 230 :IHFHL 3co8A 163 :IFTHF T0547 249 :NEAGNIYTELRKMGA 3co8A 179 :QRQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEYSQ 3co8A 194 :MPRYVHVMNSGAAMYHS T0547 282 :FKNEK 3co8A 220 :ARVGT T0547 308 :EQKKDLEPDIFIESGRFV 3co8A 225 :VVYGVEPSEGVLGPIDKL T0547 327 :ANHAVLIAPVLELFSQE 3co8A 243 :KPVFELKSALTFVKKIP T0547 344 :YAENKLILKK 3co8A 274 :RDTWIGTLPI T0547 354 :QNPKLIDELYD 3co8A 285 :YGDGWLAEYQD T0547 375 :LE 3co8A 296 :FQ T0547 377 :YLHDSIDHLE 3co8A 303 :QKCRQVGQIA T0547 389 :LTLFDLGY 3co8A 313 :MDQMMVAL T0547 399 :LQDRSNAEILTHLITKKAILL 3co8A 321 :PHEYPIGTEVTLIGKSGKYEN T0547 429 :LLAIQDEVQ 3co8A 342 :TLYDLHKHS T0547 553 :AQSILDTLED 3co8A 351 :GVPPWKITVA Number of specific fragments extracted= 26 number of extra gaps= 0 total=19610 Will force an alignment to be made, even if fragment is small Number of alignments=896 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)I241 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 3co8A 7 :RSTRIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKV 3co8A 30 :GAKTLWLAVKS T0547 88 :NQYPGFVKNLVKLGK 3co8A 45 :HGLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNE 3co8A 60 :DGLAVSVLDEGIAIRQAGID T0547 127 :APITVNGFKDRELINIGF 3co8A 80 :DFILILGPIDVKYAPIAS T0547 148 :EMGH 3co8A 98 :KYHF T0547 154 :TLTIEGLNELEAIIDIAKE 3co8A 102 :LTTVSSLDWLKSADKILGK T0547 176 :PKPNIGLRV 3co8A 121 :EKLSVNLAV T0547 187 :HSAGV 3co8A 130 :DTGMN T0547 203 :KFGL 3co8A 135 :RIGV T0547 207 :TSTELIEAVNLLKEN 3co8A 140 :SKKDLKDEIEFLQEH T0547 222 :KLLEQFT 3co8A 156 :DHFSYDG T0547 230 :IHFHL 3co8A 163 :IFTHF T0547 242 :HPL 3co8A 179 :QRQ T0547 252 :GNIYTELRKMGA 3co8A 182 :KNRWYELIDGLI T0547 265 :NLKAINLGG 3co8A 194 :MPRYVHVMN T0547 300 :VFILKNIAEQKK 3co8A 203 :SGAAMYHSKELP T0547 313 :LEPDIFI 3co8A 215 :GCNSIAR T0547 321 :SGRFVAAN 3co8A 222 :VGTVVYGV T0547 329 :HAVLIAPVLELFSQE 3co8A 245 :VFELKSALTFVKKIP T0547 344 :YAENKLILKK 3co8A 274 :RDTWIGTLPI T0547 354 :QNPKLIDELYD 3co8A 285 :YGDGWLAEYQD T0547 375 :LE 3co8A 296 :FQ T0547 377 :YLHDSIDHLES 3co8A 303 :QKCRQVGQIAM T0547 395 :GYV 3co8A 314 :DQM T0547 399 :LQDRSNAEILTHLITK 3co8A 321 :PHEYPIGTEVTLIGKS T0547 437 :QERYL 3co8A 337 :GKYEN T0547 555 :SILDTLEDLDY 3co8A 342 :TLYDLHKHSGV Number of specific fragments extracted= 28 number of extra gaps= 0 total=19638 Will force an alignment to be made, even if fragment is small Number of alignments=897 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3co8A 6 :HRSTRIEFSKSSLAYNVQYTKQVS T0547 77 :GGFNAVYPLKVNQY 3co8A 30 :GAKTLWLAVKSNAY T0547 91 :PGFVKNLVKLGK 3co8A 48 :LQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNE 3co8A 60 :DGLAVSVLDEGIAIRQAGID T0547 127 :APITVNGFKDRELINIGF 3co8A 80 :DFILILGPIDVKYAPIAS T0547 148 :EMGH 3co8A 98 :KYHF T0547 154 :TLTIEGLNELEAIIDIAKE 3co8A 102 :LTTVSSLDWLKSADKILGK T0547 174 :FK 3co8A 121 :EK T0547 178 :PNIGLRV 3co8A 123 :LSVNLAV T0547 187 :HSAGV 3co8A 130 :DTGMN T0547 203 :KFGL 3co8A 135 :RIGV T0547 207 :TSTELIEAVNLLKENKL 3co8A 140 :SKKDLKDEIEFLQEHSD T0547 224 :LEQFT 3co8A 158 :FSYDG T0547 230 :IHFHL 3co8A 163 :IFTHF T0547 249 :NEAGNIYTELRKMGA 3co8A 179 :QRQKNRWYELIDGLI T0547 265 :NLKAINLGGGLAVEYSQFKNE 3co8A 194 :MPRYVHVMNSGAAMYHSKELP T0547 313 :LEPDIFI 3co8A 215 :GCNSIAR T0547 320 :ESGRFV 3co8A 237 :GPIDKL T0547 327 :ANHAVLIAPVLELFSQE 3co8A 243 :KPVFELKSALTFVKKIP T0547 344 :YAENKLILKK 3co8A 274 :RDTWIGTLPI T0547 354 :QNPKLIDEL 3co8A 285 :YGDGWLAEY T0547 373 :NALE 3co8A 294 :QDFQ T0547 377 :YLHDSIDHLE 3co8A 303 :QKCRQVGQIA T0547 389 :LTLFDLGY 3co8A 313 :MDQMMVAL T0547 399 :LQDRSNAEILTHLITKKAILL 3co8A 321 :PHEYPIGTEVTLIGKSGKYEN T0547 429 :LLAIQDEVQE 3co8A 342 :TLYDLHKHSG T0547 554 :QSILDT 3co8A 352 :VPPWKI Number of specific fragments extracted= 27 number of extra gaps= 0 total=19665 Will force an alignment to be made, even if fragment is small Number of alignments=898 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)R39 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)I550 because last residue in template chain is (3co8A)V370 T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNFN 3co8A 3 :EAIHRSTRIEFSKSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVNQ 3co8A 31 :AKTLWLAVKSNA T0547 90 :YPGFVKNLVKLGK 3co8A 47 :LLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEG 3co8A 60 :DGLAVSVLDEGIAIRQAGIDD T0547 128 :PITVNGFKDRELINIGF 3co8A 81 :FILILGPIDVKYAPIAS T0547 146 :AAEM 3co8A 98 :KYHF T0547 154 :TLTIEGLNELEAIIDIAKE 3co8A 102 :LTTVSSLDWLKSADKILGK T0547 178 :PNIGLRVRLHSAGVG 3co8A 121 :EKLSVNLAVDTGMNR T0547 198 :GGINSK 3co8A 136 :IGVRSK T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHL 3co8A 142 :KDLKDEIEFLQEHSDHFSYDGIFTHF T0547 245 :KKALNEAGNIYTELRKM 3co8A 179 :QRQKNRWYELIDGLIMP T0547 264 :KNLKAINLG 3co8A 196 :RYVHVMNSG T0547 292 :LREYA 3co8A 205 :AAMYH T0547 309 :QKKD 3co8A 210 :SKEL T0547 321 :SGRFVAANHAVLIAPVLELFSQ 3co8A 214 :PGCNSIARVGTVVYGVEPSEGV T0547 379 :HDSIDHLESILTLFDLGYVDLQDR 3co8A 236 :LGPIDKLKPVFELKSALTFVKKIP T0547 437 :QERYLVNFSLFQSMPDFWGL 3co8A 260 :AGEGISYGSKFVTSRDTWIG T0547 458 :QNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLG 3co8A 280 :TLPIGYGDGWLAEYQDFQLLIDGQKCRQVGQIAMDQMMVALPHEYPIGTEVTLIG T0547 515 :LVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEG 3co8A 335 :KSGKYENTLYDLHKHSGVPPWKITVAFSDRLKRMV Number of specific fragments extracted= 19 number of extra gaps= 0 total=19684 Will force an alignment to be made, even if fragment is small Number of alignments=899 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)P29 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)E250 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)I540 because last residue in template chain is (3co8A)V370 T0547 30 :AI 3co8A 3 :EA T0547 39 :RDDGY 3co8A 5 :IHRST T0547 47 :LLLRFPHLIQKQIENIYGNFN 3co8A 10 :RIEFSKSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVNQ 3co8A 31 :AKTLWLAVKSNA T0547 90 :YPGFVKNLVKLGK 3co8A 47 :LLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGPIDVKY T0547 141 :NIGFIAAEM 3co8A 93 :APIASKYHF T0547 154 :TLTIEGLNELEAIIDIA 3co8A 102 :LTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLHSAGVGI 3co8A 119 :GKEKLSVNLAVDTGMNRIGV T0547 209 :TELIEAVNLLKENKL 3co8A 141 :KKDLKDEIEFLQEHS T0547 224 :LEQFTMIHFHL 3co8A 157 :HFSYDGIFTHF T0547 251 :AGNIYTELRKMGAKNLKAI 3co8A 179 :QRQKNRWYELIDGLIMPRY T0547 278 :EY 3co8A 198 :VH T0547 309 :QKKD 3co8A 239 :IDKL T0547 327 :ANHAVLIAPVLELFSQ 3co8A 243 :KPVFELKSALTFVKKI T0547 343 :EYAENKLILKK 3co8A 274 :RDTWIGTLPIG T0547 366 :YKSIKPSNALEYLHD 3co8A 285 :YGDGWLAEYQDFQLL T0547 381 :SIDHLESI 3co8A 304 :KCRQVGQI T0547 391 :LFDLGYVDLQDRSNAEILTHLIT 3co8A 312 :AMDQMMVALPHEYPIGTEVTLIG T0547 423 :KQNPADLLAIQDEVQERYL 3co8A 335 :KSGKYENTLYDLHKHSGVP T0547 455 :GL 3co8A 354 :PW T0547 521 :EVLGMK 3co8A 356 :KITVAF T0547 532 :HPTEAIIS 3co8A 362 :SDRLKRMV Number of specific fragments extracted= 23 number of extra gaps= 0 total=19707 Will force an alignment to be made, even if fragment is small Number of alignments=900 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 Warning: unaligning (T0547)S477 because last residue in template chain is (3co8A)V370 T0547 41 :DGYKGPLLL 3co8A 3 :EAIHRSTRI T0547 50 :RFPHLIQKQIENIYGNFN 3co8A 13 :FSKSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVNQ 3co8A 31 :AKTLWLAVKSNA T0547 90 :YPGFVKNLVKLG 3co8A 47 :LLQVSKIARECG T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3co8A 59 :VDGLAVSVLDEGIAIRQAGIDDFILILGPIDVK T0547 140 :INIGFIAAEM 3co8A 92 :YAPIASKYHF T0547 154 :TLTIEGLNELEAIIDIA 3co8A 102 :LTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLHS 3co8A 119 :GKEKLSVNLAVDTGM T0547 202 :SKFGLTS 3co8A 134 :NRIGVRS T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHL 3co8A 142 :KDLKDEIEFLQEHSDHFSYDGIFTHF T0547 246 :KA 3co8A 180 :RQ T0547 252 :GNIYTELRKMGAK 3co8A 182 :KNRWYELIDGLIM T0547 291 :TLREYANDV 3co8A 212 :ELPGCNSIA T0547 319 :I 3co8A 221 :R T0547 321 :SGRFVAA 3co8A 222 :VGTVVYG T0547 328 :NHAVLIAPVLELFSQ 3co8A 244 :PVFELKSALTFVKKI T0547 343 :EYAENKLILKKQNPKLIDELYDLYKSIKPS 3co8A 274 :RDTWIGTLPIGYGDGWLAEYQDFQLLIDGQ T0547 381 :SIDHLESI 3co8A 304 :KCRQVGQI T0547 391 :LFDLGYVDLQDRSNAEILTHLITK 3co8A 312 :AMDQMMVALPHEYPIGTEVTLIGK T0547 437 :QERYLVNFSLFQSMPDFWGLEQ 3co8A 336 :SGKYENTLYDLHKHSGVPPWKI T0547 465 :LDRLDEEPTRSA 3co8A 358 :TVAFSDRLKRMV Number of specific fragments extracted= 21 number of extra gaps= 0 total=19728 Will force an alignment to be made, even if fragment is small Number of alignments=901 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G5 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 6 :I 3co8A 3 :E T0547 30 :AIID 3co8A 4 :AIHR T0547 46 :PLLL 3co8A 8 :STRI T0547 50 :RFPHLIQKQIENIYGNFN 3co8A 13 :FSKSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVN 3co8A 31 :AKTLWLAVKSN T0547 89 :QYPGFVKNLVKLGK 3co8A 46 :GLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGPIDV T0547 139 :LINIGFIAAEM 3co8A 91 :KYAPIASKYHF T0547 154 :TLTIEGLNELEAIIDIA 3co8A 102 :LTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLHSAGVGI 3co8A 119 :GKEKLSVNLAVDTGMNRIGV T0547 206 :LTS 3co8A 139 :RSK T0547 210 :ELIEAVNLLK 3co8A 142 :KDLKDEIEFL T0547 220 :ENK 3co8A 154 :HSD T0547 224 :LEQFTMIHFHL 3co8A 157 :HFSYDGIFTHF T0547 249 :NEAGNIYTELRKM 3co8A 179 :QRQKNRWYELIDG T0547 263 :AKN 3co8A 192 :LIM T0547 284 :NEKSRNYTLREYANDVV 3co8A 195 :PRYVHVMNSGAAMYHSK T0547 307 :AEQKKDLEPD 3co8A 212 :ELPGCNSIAR T0547 321 :SGRFV 3co8A 222 :VGTVV T0547 326 :AANHAVLIAPVLELFSQEY 3co8A 242 :LKPVFELKSALTFVKKIPA T0547 427 :ADLLAIQ 3co8A 267 :GSKFVTS T0547 456 :LEQNFPIMPLDR 3co8A 274 :RDTWIGTLPIGY T0547 485 :SDGEISYSKDK 3co8A 286 :GDGWLAEYQDF T0547 501 :DVDVEKENYFL 3co8A 297 :QLLIDGQKCRQ T0547 512 :GF 3co8A 309 :GQ T0547 532 :HPTEAIISI 3co8A 312 :AMDQMMVAL T0547 541 :NEKG 3co8A 324 :YPIG T0547 545 :YEVEGIIEAQ 3co8A 329 :EVTLIGKSGK T0547 555 :SILDTLEDLDYDIHAIMD 3co8A 342 :TLYDLHKHSGVPPWKITV Number of specific fragments extracted= 29 number of extra gaps= 0 total=19757 Will force an alignment to be made, even if fragment is small Number of alignments=902 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFN 3co8A 5 :IHRSTRIEFSKSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVNQ 3co8A 31 :AKTLWLAVKSNA T0547 90 :YPGFVKNLVKLGK 3co8A 47 :LLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGPIDVKY T0547 141 :NIGFIAAEM 3co8A 93 :APIASKYHF T0547 154 :TLTIEGLNELEAIIDIAKE 3co8A 102 :LTTVSSLDWLKSADKILGK T0547 176 :PKPNIGLRVRLHSAGVGI 3co8A 121 :EKLSVNLAVDTGMNRIGV T0547 206 :LTSTELIEAVNLLKENKLLEQFTMIHFHL 3co8A 139 :RSKKDLKDEIEFLQEHSDHFSYDGIFTHF T0547 245 :KKALNEAGN 3co8A 179 :QRQKNRWYE T0547 258 :LRKMGAKN 3co8A 188 :LIDGLIMP T0547 266 :LKAI 3co8A 197 :YVHV T0547 290 :YTLREYANDV 3co8A 201 :MNSGAAMYHS T0547 309 :QKKDLEPDIFI 3co8A 211 :KELPGCNSIAR T0547 321 :SGRFVAA 3co8A 222 :VGTVVYG T0547 328 :NHAVLIAPVLELFSQEYAENK 3co8A 244 :PVFELKSALTFVKKIPAGEGI T0547 351 :LKK 3co8A 265 :SYG T0547 399 :LQ 3co8A 268 :SK T0547 403 :SNAEILTHLITKKAILLLGDKQNPAD 3co8A 272 :TSRDTWIGTLPIGYGDGWLAEYQDFQ T0547 438 :ERYLVNFSLFQS 3co8A 301 :DGQKCRQVGQIA T0547 533 :PTEAIISI 3co8A 313 :MDQMMVAL T0547 541 :NEKG 3co8A 325 :PIGT T0547 545 :YEVEGIIEAQ 3co8A 330 :VTLIGKSGKY T0547 555 :SILDTLEDLDYDI 3co8A 342 :TLYDLHKHSGVPP T0547 596 :LYLFLNDNGYLKSIGV 3co8A 355 :WKITVAFSDRLKRMVV Number of specific fragments extracted= 24 number of extra gaps= 0 total=19781 Will force an alignment to be made, even if fragment is small Number of alignments=903 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)I6 because first residue in template chain is (3co8A)L2 Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 7 :D 3co8A 3 :E T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFN 3co8A 4 :AIHRSTRIEFSKSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVNQ 3co8A 31 :AKTLWLAVKSNA T0547 90 :YPGFVKNLVKLGK 3co8A 47 :LLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGPIDVKY T0547 141 :NIGFIAAEM 3co8A 93 :APIASKYHF T0547 154 :TLTIEGLNELEAIIDIA 3co8A 102 :LTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLHS 3co8A 119 :GKEKLSVNLAVDTGM T0547 202 :SKFGLTSTELIEAVNLLKENKL 3co8A 134 :NRIGVRSKKDLKDEIEFLQEHS T0547 224 :LEQFTMIHFHL 3co8A 157 :HFSYDGIFTHF T0547 249 :NEAGNIYTELRKMGAKNLKAI 3co8A 179 :QRQKNRWYELIDGLIMPRYVH T0547 292 :LREYAN 3co8A 203 :SGAAMY T0547 307 :AEQKKDLEPDIFI 3co8A 209 :HSKELPGCNSIAR T0547 328 :NHAVLIAPVLELFSQEYAENKL 3co8A 244 :PVFELKSALTFVKKIPAGEGIS T0547 399 :LQDR 3co8A 266 :YGSK T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLL 3co8A 271 :VTSRDTWIGTLPIGYGDGWLAEYQDFQL T0547 436 :VQERYLVNFSLFQSMPD 3co8A 299 :LIDGQKCRQVGQIAMDQ T0547 536 :AIISI 3co8A 316 :MMVAL T0547 541 :NEKG 3co8A 325 :PIGT T0547 545 :YEVEGIIEAQ 3co8A 330 :VTLIGKSGKY T0547 555 :SILDTLEDLDYDIHAIMD 3co8A 342 :TLYDLHKHSGVPPWKITV Number of specific fragments extracted= 21 number of extra gaps= 0 total=19802 Will force an alignment to be made, even if fragment is small Number of alignments=904 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L244 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 78 :GFNAVYPLKVNQ 3co8A 31 :AKTLWLAVKSNA T0547 90 :YPGFVKNLVKLGK 3co8A 47 :LLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEG 3co8A 60 :DGLAVSVLDEGIAIRQAGIDD T0547 128 :PITVNGFKDRELINIGF 3co8A 81 :FILILGPIDVKYAPIAS T0547 146 :AAEM 3co8A 98 :KYHF T0547 154 :TLTIEGLNELEAIIDIAKE 3co8A 102 :LTTVSSLDWLKSADKILGK T0547 178 :PNIGLRVRLHSAGVG 3co8A 121 :EKLSVNLAVDTGMNR T0547 198 :GGINSK 3co8A 136 :IGVRSK T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHL 3co8A 142 :KDLKDEIEFLQEHSDHFSYDGIFTHF T0547 245 :KK 3co8A 179 :QR Number of specific fragments extracted= 10 number of extra gaps= 0 total=19812 Will force an alignment to be made, even if fragment is small Number of alignments=905 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)E250 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 50 :RFPHLIQKQIENIYGNFN 3co8A 13 :FSKSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVNQ 3co8A 31 :AKTLWLAVKSNA T0547 90 :YPGFVKNLVKLGK 3co8A 47 :LLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGPIDVKY T0547 141 :NIGFIAAEM 3co8A 93 :APIASKYHF T0547 154 :TLTIEGLNELEAIIDIA 3co8A 102 :LTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLHSAGVGI 3co8A 119 :GKEKLSVNLAVDTGMNRIGV T0547 209 :TELIEAVNLLKENKL 3co8A 141 :KKDLKDEIEFLQEHS T0547 224 :LEQFTMIHFHL 3co8A 157 :HFSYDGIFTHF T0547 251 :AGNIYTELRKMGAKNLKAI 3co8A 179 :QRQKNRWYELIDGLIMPRY T0547 278 :EY 3co8A 198 :VH T0547 309 :QKKD 3co8A 239 :IDKL T0547 327 :ANHAVLIAPVLELFSQ 3co8A 243 :KPVFELKSALTFVKKI T0547 343 :EYAENKLILKK 3co8A 274 :RDTWIGTLPIG T0547 366 :YKSIKPSNALEYLHD 3co8A 285 :YGDGWLAEYQDFQLL T0547 381 :SIDHLESI 3co8A 304 :KCRQVGQI T0547 391 :LFDLGYVDLQDRSNAEILTHLI 3co8A 312 :AMDQMMVALPHEYPIGTEVTLI T0547 531 :THPTE 3co8A 334 :GKSGK T0547 545 :YEV 3co8A 339 :YEN T0547 555 :SILDTLEDLDYDIHAIM 3co8A 342 :TLYDLHKHSGVPPWKIT Number of specific fragments extracted= 20 number of extra gaps= 0 total=19832 Will force an alignment to be made, even if fragment is small Number of alignments=906 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)K245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 50 :RFPHLIQKQIENIYGNFN 3co8A 13 :FSKSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVNQ 3co8A 31 :AKTLWLAVKSNA T0547 90 :YPGFVKNLVKLG 3co8A 47 :LLQVSKIARECG T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3co8A 59 :VDGLAVSVLDEGIAIRQAGIDDFILILGPIDVK T0547 140 :INIGFIAAEM 3co8A 92 :YAPIASKYHF T0547 154 :TLTIEGLNELEAIIDIA 3co8A 102 :LTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLHS 3co8A 119 :GKEKLSVNLAVDTGM T0547 202 :SKFGLTS 3co8A 134 :NRIGVRS T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHL 3co8A 142 :KDLKDEIEFLQEHSDHFSYDGIFTHF T0547 246 :KA 3co8A 180 :RQ T0547 252 :GNIYTELRKMGAK 3co8A 182 :KNRWYELIDGLIM T0547 291 :TLREYANDV 3co8A 212 :ELPGCNSIA T0547 319 :I 3co8A 221 :R T0547 321 :SGRFVAA 3co8A 222 :VGTVVYG T0547 328 :NHAVLIAPVLELFSQ 3co8A 244 :PVFELKSALTFVKKI T0547 343 :EYAENKLILKKQNPKLIDELYDLYKSIKPS 3co8A 274 :RDTWIGTLPIGYGDGWLAEYQDFQLLIDGQ T0547 381 :SIDHLESI 3co8A 304 :KCRQVGQI T0547 391 :LFDLGYVDLQDRSNAEILTHLIT 3co8A 312 :AMDQMMVALPHEYPIGTEVTLIG Number of specific fragments extracted= 18 number of extra gaps= 0 total=19850 Will force an alignment to be made, even if fragment is small Number of alignments=907 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 50 :RFPHLIQKQIENIYGNFN 3co8A 13 :FSKSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVN 3co8A 31 :AKTLWLAVKSN T0547 89 :QYPGFVKNLVKLGK 3co8A 46 :GLLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGPIDV T0547 139 :LINIGFIAAEM 3co8A 91 :KYAPIASKYHF T0547 154 :TLTIEGLNELEAIIDIA 3co8A 102 :LTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLHSAGVGI 3co8A 119 :GKEKLSVNLAVDTGMNRIGV T0547 206 :LTS 3co8A 139 :RSK T0547 210 :ELIEAVNLLK 3co8A 142 :KDLKDEIEFL T0547 220 :ENK 3co8A 154 :HSD T0547 224 :LEQFTMIHFHL 3co8A 157 :HFSYDGIFTHF T0547 249 :NEAGNIYTELRKM 3co8A 179 :QRQKNRWYELIDG T0547 263 :AKN 3co8A 192 :LIM T0547 284 :NEKSRNYTLREYANDVV 3co8A 195 :PRYVHVMNSGAAMYHSK T0547 307 :AEQKKDLEPD 3co8A 212 :ELPGCNSIAR T0547 321 :SGRFV 3co8A 222 :VGTVV T0547 326 :AANHAVLIAPVLELFSQEY 3co8A 242 :LKPVFELKSALTFVKKIPA T0547 427 :ADLLAIQ 3co8A 267 :GSKFVTS T0547 456 :LEQNFPIMPLDR 3co8A 274 :RDTWIGTLPIGY T0547 485 :SDGEISYSKDK 3co8A 286 :GDGWLAEYQDF T0547 501 :DVDVEKENYFL 3co8A 297 :QLLIDGQKCRQ T0547 512 :GF 3co8A 309 :GQ T0547 532 :HPTEAIISI 3co8A 312 :AMDQMMVAL T0547 541 :NEKG 3co8A 324 :YPIG T0547 545 :YEVEGIIEAQ 3co8A 329 :EVTLIGKSGK T0547 555 :SILDTLEDLDYDIHAIMD 3co8A 342 :TLYDLHKHSGVPPWKITV Number of specific fragments extracted= 26 number of extra gaps= 0 total=19876 Will force an alignment to be made, even if fragment is small Number of alignments=908 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 T0547 45 :GPLLLRFPHLIQKQIENIYGNFN 3co8A 8 :STRIEFSKSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVNQ 3co8A 31 :AKTLWLAVKSNA T0547 90 :YPGFVKNLVKLGK 3co8A 47 :LLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGPIDVKY T0547 141 :NIGFIAAEM 3co8A 93 :APIASKYHF T0547 154 :TLTIEGLNELEAIIDIAKE 3co8A 102 :LTTVSSLDWLKSADKILGK T0547 176 :PKPNIGLRVRLHSAGVGI 3co8A 121 :EKLSVNLAVDTGMNRIGV T0547 206 :LTSTELIEAVNLLKENKLLEQFTMIHFHL 3co8A 139 :RSKKDLKDEIEFLQEHSDHFSYDGIFTHF T0547 245 :KKALNEAGN 3co8A 179 :QRQKNRWYE T0547 258 :LRKMGAKN 3co8A 188 :LIDGLIMP T0547 266 :LKAI 3co8A 197 :YVHV T0547 290 :YTLREYANDV 3co8A 201 :MNSGAAMYHS T0547 309 :QKKDLEPDIFI 3co8A 211 :KELPGCNSIAR T0547 321 :SGRFVAA 3co8A 222 :VGTVVYG T0547 328 :NHAVLIAPVLELFSQEYAENK 3co8A 244 :PVFELKSALTFVKKIPAGEGI T0547 351 :LKK 3co8A 265 :SYG T0547 399 :LQ 3co8A 268 :SK T0547 403 :SNAEILTHLITKKAILLLGDKQNPAD 3co8A 272 :TSRDTWIGTLPIGYGDGWLAEYQDFQ T0547 438 :ERYLVNFSLFQS 3co8A 301 :DGQKCRQVGQIA T0547 533 :PTEAIISI 3co8A 313 :MDQMMVAL T0547 541 :NEKG 3co8A 325 :PIGT T0547 545 :YEVEGIIEAQ 3co8A 330 :VTLIGKSGKY T0547 555 :SILDTLEDLDYD 3co8A 342 :TLYDLHKHSGVP Number of specific fragments extracted= 23 number of extra gaps= 0 total=19899 Will force an alignment to be made, even if fragment is small Number of alignments=909 # 3co8A read from all-align.a2m # found chain 3co8A in template set Warning: unaligning (T0547)G235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3co8A)F178 Warning: unaligning (T0547)L248 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3co8A)F178 T0547 45 :GPLLLRFPHLIQKQIENIYGNFN 3co8A 8 :STRIEFSKSSLAYNVQYTKQVSG T0547 78 :GFNAVYPLKVNQ 3co8A 31 :AKTLWLAVKSNA T0547 90 :YPGFVKNLVKLGK 3co8A 47 :LLQVSKIARECGV T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3co8A 60 :DGLAVSVLDEGIAIRQAGIDDFILILGPIDVKY T0547 141 :NIGFIAAEM 3co8A 93 :APIASKYHF T0547 154 :TLTIEGLNELEAIIDIA 3co8A 102 :LTTVSSLDWLKSADKIL T0547 174 :FKPKPNIGLRVRLHS 3co8A 119 :GKEKLSVNLAVDTGM T0547 202 :SKFGLTSTELIEAVNLLKENKL 3co8A 134 :NRIGVRSKKDLKDEIEFLQEHS T0547 224 :LEQFTMIHFHL 3co8A 157 :HFSYDGIFTHF T0547 249 :NEAGNIYTELRKMGAKNLKAI 3co8A 179 :QRQKNRWYELIDGLIMPRYVH T0547 292 :LREYAN 3co8A 203 :SGAAMY T0547 307 :AEQKKDLEPDIFI 3co8A 209 :HSKELPGCNSIAR T0547 328 :NHAVLIAPVLELFSQEYAENKL 3co8A 244 :PVFELKSALTFVKKIPAGEGIS T0547 399 :LQDR 3co8A 266 :YGSK T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLL 3co8A 271 :VTSRDTWIGTLPIGYGDGWLAEYQDFQL T0547 436 :VQERYLVNFSLFQSMPD 3co8A 299 :LIDGQKCRQVGQIAMDQ T0547 536 :AIISI 3co8A 316 :MMVAL T0547 541 :NEKG 3co8A 325 :PIGT T0547 545 :YEVEGIIEAQ 3co8A 330 :VTLIGKSGKY T0547 555 :SILDTLEDLDYDIHAIM 3co8A 342 :TLYDLHKHSGVPPWKIT Number of specific fragments extracted= 20 number of extra gaps= 0 total=19919 Will force an alignment to be made, even if fragment is small Number of alignments=910 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)G5 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D562 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)D564 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 6 :IDIWGNENFIIKNGKVCINYEKKPAII 3e6eA 3 :VGWHRPTRLHIDTQAITENVQKECQRL T0547 92 :G 3e6eA 31 :E T0547 94 :VKNLVKLGKDYNYGLEAGSKAELLLA 3e6eA 32 :GTALFAVVKANGYGHGAVESAKAAKK T0547 120 :MAYNNEGAPITVNGFKDRELINIGF 3e6eA 65 :VALLDEAIELREAGVQDPILILSVV T0547 145 :IAAEMGHNITLTIEGLNELE 3e6eA 94 :VPLLIQYDLSVTVATQEWLE T0547 165 :AIIDIAKER 3e6eA 115 :ALQQLTPES T0547 175 :KPKPNIGLRVR 3e6eA 124 :NTPLRVHLKVD T0547 202 :SKFG 3e6eA 138 :GRIG T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 225 :EQFTMIHFHLGSQIT 3e6eA 163 :WEGIFTHFSTADEID T0547 241 :IHPLKKALNEAGNIYTELRKMGA 3e6eA 178 :TSYFEKQAGRFKAVLAVLEELPR T0547 268 :AINLG 3e6eA 201 :YVHVS T0547 273 :GGLAVE 3e6eA 209 :TALWHP T0547 495 :KPLFLHDVDVEKENYFLGFFLVGA 3e6eA 244 :KPALRLTSELIHVKRLAAGEGIGY T0547 519 :YQE 3e6eA 273 :TEA T0547 522 :VLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLE 3e6eA 283 :PIGYADGWLRHLQGFTVLVNGKRCEIVGRVCMDQCMIRLA T0547 565 :YDIHAIMDILNERISNSK 3e6eA 325 :VPVGPVVTLVGKDGNEEN T0547 583 :LVNDKQKKHILGELYLFLNDNGYLKS 3e6eA 345 :QMVAEKLETIHYEVACTFSQRIPREY Number of specific fragments extracted= 19 number of extra gaps= 3 total=19938 Will force an alignment to be made, even if fragment is small Number of alignments=911 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 T0547 97 :LVKLGKDYNYGLEAGSKAELLLA 3e6eA 35 :LFAVVKANGYGHGAVESAKAAKK T0547 120 :MAYNNEGAPITVNGFKDRELINIGF 3e6eA 65 :VALLDEAIELREAGVQDPILILSVV T0547 145 :IAAEMGHNITLTIEGLNELE 3e6eA 94 :VPLLIQYDLSVTVATQEWLE T0547 165 :AIIDIAKER 3e6eA 115 :ALQQLTPES T0547 175 :KPKPNIGLRVR 3e6eA 124 :NTPLRVHLKVD T0547 202 :SKFG 3e6eA 138 :GRIG T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 225 :EQFTMIHFHLGSQIT 3e6eA 163 :WEGIFTHFSTADEID T0547 241 :IHPLKKALNEAGNIYTELRKMGA 3e6eA 178 :TSYFEKQAGRFKAVLAVLEELPR T0547 268 :AINLGG 3e6eA 201 :YVHVSN T0547 274 :GLAVEYSQ 3e6eA 210 :ALWHPDVP T0547 282 :FKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAP 3e6eA 228 :YGLNPSGNKLAPSYALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGT Number of specific fragments extracted= 13 number of extra gaps= 2 total=19951 Will force an alignment to be made, even if fragment is small Number of alignments=912 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D562 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)D564 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 41 :DG 3e6eA 3 :VG T0547 49 :LRFPHLIQKQIENIYGNFNKARKEFGY 3e6eA 5 :WHRPTRLHIDTQAITENVQKECQRLPE T0547 78 :GFNAVYPLKVN 3e6eA 32 :GTALFAVVKAN T0547 89 :QYPGFVKNLVKLG 3e6eA 47 :GAVESAKAAKKGG T0547 107 :GLEAGSKAELLLAMAYNN 3e6eA 62 :GFCVALLDEAIELREAGV T0547 126 :GAPITVNGFKDR 3e6eA 80 :QDPILILSVVDL T0547 143 :GFIAAEMGHNITLTIEGLNELE 3e6eA 92 :AYVPLLIQYDLSVTVATQEWLE T0547 165 :AIIDIAKER 3e6eA 115 :ALQQLTPES T0547 175 :KPKPNIGLRVR 3e6eA 124 :NTPLRVHLKVD T0547 199 :G 3e6eA 137 :M T0547 202 :SKFGL 3e6eA 138 :GRIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 226 :QFTMIHFHLG 3e6eA 162 :LWEGIFTHFS T0547 236 :SQITEIHPLKKALNEAGNIYTEL 3e6eA 173 :ADEIDTSYFEKQAGRFKAVLAVL T0547 263 :AKNLKAINLGGGLAVEYS 3e6eA 196 :EELPRYVHVSNSATALWH T0547 512 :GFFLVGA 3e6eA 261 :AGEGIGY T0547 524 :GMKHNLFTHPTEAIISI 3e6eA 268 :GETYVTEAEEWIGTVPI T0547 541 :NEKGYEVEGIIEAQSILDTLE 3e6eA 302 :NGKRCEIVGRVCMDQCMIRLA T0547 565 :YDIHAIMDILNERISN 3e6eA 325 :VPVGPVVTLVGKDGNE T0547 581 :SKLVNDKQKKHILGELYLFLNDNGYLKS 3e6eA 343 :TLQMVAEKLETIHYEVACTFSQRIPREY Number of specific fragments extracted= 21 number of extra gaps= 3 total=19972 Will force an alignment to be made, even if fragment is small Number of alignments=913 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 T0547 52 :PHLIQKQIENIYGNFNKARKEFGY 3e6eA 8 :PTRLHIDTQAITENVQKECQRLPE T0547 78 :GFNAVYPLKVN 3e6eA 32 :GTALFAVVKAN T0547 89 :QYPGFVKNLVKLG 3e6eA 47 :GAVESAKAAKKGG T0547 107 :GLEAGSKAELLLAMAYNN 3e6eA 62 :GFCVALLDEAIELREAGV T0547 126 :GAPITVNGFKDR 3e6eA 80 :QDPILILSVVDL T0547 143 :GFIAAEMGHNITLTIEGLNELE 3e6eA 92 :AYVPLLIQYDLSVTVATQEWLE T0547 165 :AIIDIAKER 3e6eA 115 :ALQQLTPES T0547 175 :KPKPNIGLRVR 3e6eA 124 :NTPLRVHLKVD T0547 199 :G 3e6eA 137 :M T0547 202 :SKFGL 3e6eA 138 :GRIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 226 :QFTMIHFHLG 3e6eA 162 :LWEGIFTHFS T0547 236 :SQITEIHPLKKALNEAGNIYTEL 3e6eA 173 :ADEIDTSYFEKQAGRFKAVLAVL T0547 263 :AKNLKAINLGGGLAVEYS 3e6eA 196 :EELPRYVHVSNSATALWH T0547 290 :YT 3e6eA 218 :GN T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 3e6eA 228 :YGLNPSGNKLAPSYALKPALRLTSELIHVKRLA T0547 346 :ENKLILKKQNPKLIDELYDLYKSIKPSN 3e6eA 261 :AGEGIGYGETYVTEAEEWIGTVPIGYAD Number of specific fragments extracted= 18 number of extra gaps= 2 total=19990 Will force an alignment to be made, even if fragment is small Number of alignments=914 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)K219 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D562 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)L563 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 2 :MD 3e6eA 3 :VG T0547 8 :I 3e6eA 5 :W T0547 25 :YEKKPAIID 3e6eA 6 :HRPTRLHID T0547 59 :IENIYGNFNKARKEFGY 3e6eA 15 :TQAITENVQKECQRLPE T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGKDYN 3e6eA 32 :GTALFAVVKANGYGHGAVESAKAAKKGG T0547 115 :ELLLAMAYNNEGAPITVNGFKDRELINIGFIAAE 3e6eA 60 :ATGFCVALLDEAIELREAGVQDPILILSVVDLAY T0547 149 :MGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 98 :IQYDLSVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 202 :SKFGLTSTELIEAV 3e6eA 138 :GRIGFLTPEETKQA T0547 216 :NLL 3e6eA 154 :FVQ T0547 223 :LLEQFTMIHFHLGSQITEIH 3e6eA 161 :FLWEGIFTHFSTADEIDTSY T0547 243 :PLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYS 3e6eA 184 :QAGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMI T0547 281 :QFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLE 3e6eA 227 :MYGLNPSGNKLAPSYALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPI T0547 339 :LFS 3e6eA 293 :HLQ T0547 539 :SINEKGYEVEGIIEAQSILDTLE 3e6eA 300 :LVNGKRCEIVGRVCMDQCMIRLA T0547 565 :YDIHAIMDILNERISNSKLVNDK 3e6eA 325 :VPVGPVVTLVGKDGNEENTLQMV T0547 588 :QKKHILGELYLFLNDN 3e6eA 350 :KLETIHYEVACTFSQR T0547 606 :LKSIGV 3e6eA 366 :IPREYN Number of specific fragments extracted= 17 number of extra gaps= 3 total=20007 Will force an alignment to be made, even if fragment is small Number of alignments=915 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)K219 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 T0547 105 :NYGLEAGSKAELLL 3e6eA 43 :GYGHGAVESAKAAK T0547 119 :AMAYNNEGAPITVNGFKDRELINIGFIAAE 3e6eA 64 :CVALLDEAIELREAGVQDPILILSVVDLAY T0547 149 :MGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 98 :IQYDLSVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 202 :SKFGLTSTELIEAV 3e6eA 138 :GRIGFLTPEETKQA T0547 216 :NLL 3e6eA 154 :FVQ T0547 223 :LLEQFTMIHFHLGSQITEI 3e6eA 161 :FLWEGIFTHFSTADEIDTS Number of specific fragments extracted= 6 number of extra gaps= 2 total=20013 Will force an alignment to be made, even if fragment is small Number of alignments=916 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 41 :DGYKGPL 3e6eA 3 :VGWHRPT T0547 48 :LLRFPHLIQKQIENIYGNFN 3e6eA 11 :LHIDTQAITENVQKECQRLP T0547 77 :GGFNAVYPLKVNQYPG 3e6eA 31 :EGTALFAVVKANGYGH T0547 93 :FVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVN 3e6eA 48 :AVESAKAAKKGGATGFCVALLDEAIELREAGVQDPILILS T0547 139 :LINIGFIAAEMGHNITLTIEGLNELE 3e6eA 88 :VVDLAYVPLLIQYDLSVTVATQEWLE T0547 165 :AIIDIAKE 3e6eA 115 :ALQQLTPE T0547 174 :FKPKPNIGLRVR 3e6eA 123 :SNTPLRVHLKVD T0547 188 :SAGVG 3e6eA 138 :GRIGF T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 226 :QFTMIHFHLGS 3e6eA 162 :LWEGIFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVLEELPR T0547 279 :YSQFKNEKSRNYTLREYANDVVFILKNIAEQK 3e6eA 201 :YVHVSNSATALWHPDVPGNMIRYGVAMYGLNP T0547 313 :LEPDIFI 3e6eA 233 :SGNKLAP T0547 323 :RFVAANHAVLIAPVLELFSQ 3e6eA 240 :SYALKPALRLTSELIHVKRL T0547 343 :EYAENKL 3e6eA 266 :GYGETYV T0547 361 :ELYDLYKSIKPSNALEYLHD 3e6eA 273 :TEAEEWIGTVPIGYADGWLR T0547 381 :SIDHLESILTLFDLGYVD 3e6eA 298 :TVLVNGKRCEIVGRVCMD T0547 399 :LQ 3e6eA 321 :LA T0547 402 :RSNAEILTHL 3e6eA 325 :VPVGPVVTLV T0547 421 :GDKQNPADLL 3e6eA 335 :GKDGNEENTL T0547 554 :QSILDTLEDLDYDIHAIMDILN 3e6eA 345 :QMVAEKLETIHYEVACTFSQRI T0547 597 :Y 3e6eA 367 :P T0547 608 :SIGV 3e6eA 368 :REYN Number of specific fragments extracted= 24 number of extra gaps= 3 total=20037 Will force an alignment to be made, even if fragment is small Number of alignments=917 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)D3 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)C483 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)D484 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 Warning: unaligning (T0547)S608 because last residue in template chain is (3e6eA)N371 T0547 4 :YG 3e6eA 3 :VG T0547 39 :R 3e6eA 5 :W T0547 43 :YKGPLLLRFPHLIQKQIENIYG 3e6eA 6 :HRPTRLHIDTQAITENVQKECQ T0547 74 :GYKGGFNAVYPLKVNQY 3e6eA 28 :RLPEGTALFAVVKANGY T0547 91 :PGFVKNLVKLGK 3e6eA 49 :VESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3e6eA 61 :TGFCVALLDEAIELREAGVQ T0547 127 :APITVNGFKDRE 3e6eA 81 :DPILILSVVDLA T0547 142 :IGF 3e6eA 94 :VPL T0547 146 :AAEMG 3e6eA 97 :LIQYD T0547 153 :ITLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 102 :LSVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGV 3e6eA 138 :GRIG T0547 193 :I 3e6eA 142 :F T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 226 :QFTMIHFHL 3e6eA 162 :LWEGIFTHF T0547 235 :GSQITEIHPLKKA 3e6eA 172 :TADEIDTSYFEKQ T0547 252 :GNIYTELRK 3e6eA 185 :AGRFKAVLA T0547 262 :GAKNLK 3e6eA 194 :VLEELP T0547 268 :AINLG 3e6eA 201 :YVHVS T0547 291 :T 3e6eA 206 :N T0547 301 :FILKNIAEQKKDLEPD 3e6eA 207 :SATALWHPDVPGNMIR T0547 321 :SG 3e6eA 236 :KL T0547 326 :AANHAVLIAPVLELFSQ 3e6eA 243 :LKPALRLTSELIHVKRL T0547 343 :EYAENKLILKKQNPKLIDE 3e6eA 274 :EAEEWIGTVPIGYADGWLR T0547 362 :LY 3e6eA 294 :LQ T0547 367 :KSIKPSNAL 3e6eA 296 :GFTVLVNGK T0547 381 :SIDHLE 3e6eA 305 :RCEIVG T0547 471 :EPTRSASIWDIT 3e6eA 311 :RVCMDQCMIRLA T0547 485 :SD 3e6eA 325 :VP T0547 523 :LGMKHNLFTHPTEAII 3e6eA 327 :VGPVVTLVGKDGNEEN T0547 555 :SILDTLEDLDYDIHAIM 3e6eA 343 :TLQMVAEKLETIHYEVA T0547 583 :LVN 3e6eA 361 :TFS T0547 601 :NDNGYLK 3e6eA 364 :QRIPREY Number of specific fragments extracted= 33 number of extra gaps= 3 total=20070 Will force an alignment to be made, even if fragment is small Number of alignments=918 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)K36 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 Warning: unaligning (T0547)N541 because last residue in template chain is (3e6eA)N371 T0547 37 :EL 3e6eA 3 :VG T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFN 3e6eA 5 :WHRPTRLHIDTQAITENVQKECQRLP T0547 77 :GGFNAVYPLKVNQY 3e6eA 31 :EGTALFAVVKANGY T0547 91 :PGFVKNLVKLGK 3e6eA 49 :VESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3e6eA 61 :TGFCVALLDEAIELREAGVQ T0547 127 :APITVNGFKDRE 3e6eA 81 :DPILILSVVDLA T0547 141 :NIGF 3e6eA 93 :YVPL T0547 146 :AAEMG 3e6eA 97 :LIQYD T0547 153 :ITLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 102 :LSVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGVG 3e6eA 138 :GRIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 226 :QFTMIHFHLGS 3e6eA 162 :LWEGIFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVLEELPR T0547 268 :AINLGGGLAV 3e6eA 201 :YVHVSNSATA T0547 282 :F 3e6eA 211 :L T0547 306 :IAEQKKDL 3e6eA 212 :WHPDVPGN T0547 318 :FIESGRFVAA 3e6eA 220 :MIRYGVAMYG T0547 328 :NHAVLIAPVLELFSQ 3e6eA 245 :PALRLTSELIHVKRL T0547 343 :EY 3e6eA 275 :AE T0547 346 :ENKLILK 3e6eA 277 :EWIGTVP T0547 353 :KQNPKLIDELYDLYKSI 3e6eA 285 :GYADGWLRHLQGFTVLV T0547 378 :LHDSIDHLESI 3e6eA 302 :NGKRCEIVGRV T0547 391 :LFDLGYVDLQ 3e6eA 313 :CMDQCMIRLA T0547 402 :RSNAEILTHL 3e6eA 325 :VPVGPVVTLV T0547 420 :LGDKQNPADLLAIQDEVQER 3e6eA 335 :GKDGNEENTLQMVAEKLETI T0547 443 :NFSLFQSMPDFWGLEQ 3e6eA 355 :HYEVACTFSQRIPREY Number of specific fragments extracted= 27 number of extra gaps= 3 total=20097 Will force an alignment to be made, even if fragment is small Number of alignments=919 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)D33 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 34 :IVK 3e6eA 3 :VGW T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3e6eA 6 :HRPTRLHIDTQAITENVQKECQRL T0547 76 :KGGFNAVYPLKVN 3e6eA 30 :PEGTALFAVVKAN T0547 89 :QYPGFVKNLVKLGK 3e6eA 47 :GAVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3e6eA 61 :TGFCVALLDEAIELREAGVQ T0547 127 :APITVNGFKDRE 3e6eA 81 :DPILILSVVDLA T0547 141 :NIGF 3e6eA 93 :YVPL T0547 146 :AAEMG 3e6eA 97 :LIQYD T0547 153 :ITLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 102 :LSVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :S 3e6eA 138 :G T0547 203 :KFG 3e6eA 139 :RIG T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 226 :QFTMIHFHLGS 3e6eA 162 :LWEGIFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTEL 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVL T0547 264 :KNLK 3e6eA 196 :EELP T0547 268 :AINLG 3e6eA 201 :YVHVS T0547 291 :TLREYA 3e6eA 206 :NSATAL T0547 306 :IAEQKKDLEPD 3e6eA 212 :WHPDVPGNMIR T0547 326 :AANHAVLIAPVLELFSQ 3e6eA 243 :LKPALRLTSELIHVKRL T0547 343 :EYAENKLILK 3e6eA 274 :EAEEWIGTVP T0547 353 :KQNPKLIDE 3e6eA 288 :DGWLRHLQG T0547 368 :SIKPSN 3e6eA 298 :TVLVNG T0547 380 :DSIDHLESI 3e6eA 304 :KRCEIVGRV T0547 391 :LFDLGYVDLQ 3e6eA 313 :CMDQCMIRLA T0547 402 :RSNAEILTH 3e6eA 325 :VPVGPVVTL T0547 419 :LLGDKQNPADLL 3e6eA 334 :VGKDGNEENTLQ T0547 558 :DTLEDLDYDIHAIMDI 3e6eA 346 :MVAEKLETIHYEVACT T0547 584 :VNDK 3e6eA 362 :FSQR T0547 606 :LKSIGV 3e6eA 366 :IPREYN Number of specific fragments extracted= 30 number of extra gaps= 3 total=20127 Will force an alignment to be made, even if fragment is small Number of alignments=920 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)K28 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)E542 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)K543 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 Warning: unaligning (T0547)I609 because last residue in template chain is (3e6eA)N371 T0547 29 :PA 3e6eA 3 :VG T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 3e6eA 5 :WHRPTRLHIDTQAITENVQKECQRL T0547 76 :KGGFNAVYPLKVNQ 3e6eA 30 :PEGTALFAVVKANG T0547 90 :YPGFVKNLVKLGK 3e6eA 48 :AVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILILSVVDLAY T0547 142 :IGF 3e6eA 94 :VPL T0547 146 :AAEMGH 3e6eA 97 :LIQYDL T0547 153 :I 3e6eA 103 :S T0547 155 :LTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 104 :VTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGVG 3e6eA 138 :GRIGF T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 226 :QFTMIHFHLGS 3e6eA 162 :LWEGIFTHFST T0547 237 :QITEIHPL 3e6eA 174 :DEIDTSYF T0547 249 :NEAGNIYTELRKMGAKNLKAINLG 3e6eA 182 :EKQAGRFKAVLAVLEELPRYVHVS T0547 291 :TLREYA 3e6eA 206 :NSATAL T0547 306 :IAEQKK 3e6eA 212 :WHPDVP T0547 315 :PDI 3e6eA 218 :GNM T0547 319 :IESGRFVAA 3e6eA 221 :IRYGVAMYG T0547 328 :NHAVLIAPVLELFSQ 3e6eA 245 :PALRLTSELIHVKRL T0547 343 :EYAENKLILK 3e6eA 274 :EAEEWIGTVP T0547 485 :SDGEISYSKDKP 3e6eA 287 :ADGWLRHLQGFT T0547 500 :HD 3e6eA 310 :GR T0547 531 :THPTEAIISIN 3e6eA 312 :VCMDQCMIRLA T0547 544 :GYEVEGIIEAQ 3e6eA 328 :GPVVTLVGKDG T0547 555 :SILDTLEDLDYDI 3e6eA 343 :TLQMVAEKLETIH T0547 594 :GELYLFLNDNGYLKS 3e6eA 356 :YEVACTFSQRIPREY Number of specific fragments extracted= 27 number of extra gaps= 3 total=20154 Will force an alignment to be made, even if fragment is small Number of alignments=921 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)R39 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)C483 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)D484 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 Warning: unaligning (T0547)S608 because last residue in template chain is (3e6eA)N371 T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNF 3e6eA 3 :VGWHRPTRLHIDTQAITENVQKECQRL T0547 76 :KGGFNAVYPLKVN 3e6eA 30 :PEGTALFAVVKAN T0547 89 :QYPGFVKNLVKLGK 3e6eA 47 :GAVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILILSVVDLAY T0547 142 :IGF 3e6eA 94 :VPL T0547 146 :AAEMGH 3e6eA 97 :LIQYDL T0547 153 :I 3e6eA 103 :S T0547 155 :LTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 104 :VTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGVG 3e6eA 138 :GRIGF T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 226 :QFTMIHFHLGSQITEIHPLK 3e6eA 162 :LWEGIFTHFSTADEIDTSYF T0547 249 :NEAGNIYTELRKMGAKNLKAINLG 3e6eA 182 :EKQAGRFKAVLAVLEELPRYVHVS T0547 302 :ILKNIAEQKKDLEPD 3e6eA 208 :ATALWHPDVPGNMIR T0547 321 :SGRFVAA 3e6eA 223 :YGVAMYG T0547 328 :NHAVLIAPVLELFSQ 3e6eA 245 :PALRLTSELIHVKRL T0547 343 :EYAENKLILKKQ 3e6eA 274 :EAEEWIGTVPIG T0547 366 :YKSIKPSNALEYL 3e6eA 286 :YADGWLRHLQGFT T0547 379 :HDSIDHL 3e6eA 303 :GKRCEIV T0547 470 :EEPTRSASIWDIT 3e6eA 310 :GRVCMDQCMIRLA T0547 485 :S 3e6eA 325 :V T0547 531 :THPTEAIISINEKGYEV 3e6eA 326 :PVGPVVTLVGKDGNEEN T0547 555 :SILDTLEDLDYDIHAIMDI 3e6eA 343 :TLQMVAEKLETIHYEVACT T0547 600 :LNDNGYLK 3e6eA 363 :SQRIPREY Number of specific fragments extracted= 24 number of extra gaps= 3 total=20178 Will force an alignment to be made, even if fragment is small Number of alignments=922 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 T0547 50 :RFPHLIQKQIENIYGNFN 3e6eA 13 :IDTQAITENVQKECQRLP T0547 77 :GGFNAVYPLKVNQYPG 3e6eA 31 :EGTALFAVVKANGYGH T0547 93 :FVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVN 3e6eA 48 :AVESAKAAKKGGATGFCVALLDEAIELREAGVQDPILILS T0547 139 :LINIGFIAAEMGHNITLTIEGLNELE 3e6eA 88 :VVDLAYVPLLIQYDLSVTVATQEWLE T0547 165 :AIIDIAKE 3e6eA 115 :ALQQLTPE T0547 174 :FKPKPNIGLRVR 3e6eA 123 :SNTPLRVHLKVD T0547 188 :SAGVG 3e6eA 138 :GRIGF T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 226 :QFTMIHFHLGS 3e6eA 162 :LWEGIFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVLEELPR T0547 279 :YSQFKNEKSRNYTLREYANDVVFILKNIAEQK 3e6eA 201 :YVHVSNSATALWHPDVPGNMIRYGVAMYGLNP T0547 313 :LEPDIFI 3e6eA 233 :SGNKLAP T0547 323 :RFVAANHAVLIAPVLELFSQ 3e6eA 240 :SYALKPALRLTSELIHVKRL T0547 343 :EYAENKLI 3e6eA 266 :GYGETYVT T0547 362 :LYDLYKSIKPSNALEYLHD 3e6eA 274 :EAEEWIGTVPIGYADGWLR T0547 381 :SIDHLESILTLFDLGYVD 3e6eA 298 :TVLVNGKRCEIVGRVCMD Number of specific fragments extracted= 17 number of extra gaps= 2 total=20195 Will force an alignment to be made, even if fragment is small Number of alignments=923 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)C483 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)D484 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 44 :KGPLLLRFPHLIQKQIENIYG 3e6eA 7 :RPTRLHIDTQAITENVQKECQ T0547 74 :GYKGGFNAVYPLKVNQY 3e6eA 28 :RLPEGTALFAVVKANGY T0547 91 :PGFVKNLVKLGK 3e6eA 49 :VESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3e6eA 61 :TGFCVALLDEAIELREAGVQ T0547 127 :APITVNGFKDRE 3e6eA 81 :DPILILSVVDLA T0547 142 :IGF 3e6eA 94 :VPL T0547 146 :AAEMG 3e6eA 97 :LIQYD T0547 153 :ITLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 102 :LSVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGV 3e6eA 138 :GRIG T0547 193 :I 3e6eA 142 :F T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 226 :QFTMIHFHL 3e6eA 162 :LWEGIFTHF T0547 235 :GSQITEIHPLKKA 3e6eA 172 :TADEIDTSYFEKQ T0547 252 :GNIYTELRK 3e6eA 185 :AGRFKAVLA T0547 262 :GAKNLK 3e6eA 194 :VLEELP T0547 268 :AINLG 3e6eA 201 :YVHVS T0547 291 :T 3e6eA 206 :N T0547 301 :FILKNIAEQKKDLEPD 3e6eA 207 :SATALWHPDVPGNMIR T0547 321 :SG 3e6eA 236 :KL T0547 326 :AANHAVLIAPVLELFSQ 3e6eA 243 :LKPALRLTSELIHVKRL T0547 343 :EYAENKLILKKQNPKLIDE 3e6eA 274 :EAEEWIGTVPIGYADGWLR T0547 362 :LY 3e6eA 294 :LQ T0547 367 :KSIKPSNAL 3e6eA 296 :GFTVLVNGK T0547 381 :SIDHLE 3e6eA 305 :RCEIVG T0547 471 :EPTRSASIWDIT 3e6eA 311 :RVCMDQCMIRLA T0547 485 :SD 3e6eA 325 :VP T0547 523 :LGMKHNLFTHPTEAII 3e6eA 327 :VGPVVTLVGKDGNEEN T0547 555 :SILDTLEDLDYDIHAIM 3e6eA 343 :TLQMVAEKLETIHYEVA Number of specific fragments extracted= 29 number of extra gaps= 3 total=20224 Will force an alignment to be made, even if fragment is small Number of alignments=924 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 3e6eA 7 :RPTRLHIDTQAITENVQKECQRLP T0547 77 :GGFNAVYPLKVNQY 3e6eA 31 :EGTALFAVVKANGY T0547 91 :PGFVKNLVKLGK 3e6eA 49 :VESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3e6eA 61 :TGFCVALLDEAIELREAGVQ T0547 127 :APITVNGFKDRE 3e6eA 81 :DPILILSVVDLA T0547 141 :NIGF 3e6eA 93 :YVPL T0547 146 :AAEMG 3e6eA 97 :LIQYD T0547 153 :ITLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 102 :LSVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGVG 3e6eA 138 :GRIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 226 :QFTMIHFHLGS 3e6eA 162 :LWEGIFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGA 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVLEELPR T0547 268 :AINLGGGLAV 3e6eA 201 :YVHVSNSATA T0547 282 :F 3e6eA 211 :L T0547 306 :IAEQKKDL 3e6eA 212 :WHPDVPGN T0547 318 :FIESGRFVAA 3e6eA 220 :MIRYGVAMYG T0547 328 :NHAVLIAPVLELFSQ 3e6eA 245 :PALRLTSELIHVKRL T0547 343 :EY 3e6eA 275 :AE T0547 346 :ENKLILK 3e6eA 277 :EWIGTVP T0547 353 :KQNPKLIDELYDLYKSI 3e6eA 285 :GYADGWLRHLQGFTVLV T0547 378 :LHDSIDHLESI 3e6eA 302 :NGKRCEIVGRV T0547 391 :LFDLGYVDLQ 3e6eA 313 :CMDQCMIRLA T0547 402 :RSNAEILTHL 3e6eA 325 :VPVGPVVTLV T0547 420 :LGDKQNPADLLAIQDEVQER 3e6eA 335 :GKDGNEENTLQMVAEKLETI T0547 443 :NFSLFQSM 3e6eA 355 :HYEVACTF Number of specific fragments extracted= 26 number of extra gaps= 3 total=20250 Will force an alignment to be made, even if fragment is small Number of alignments=925 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 3e6eA 7 :RPTRLHIDTQAITENVQKECQRL T0547 76 :KGGFNAVYPLKVN 3e6eA 30 :PEGTALFAVVKAN T0547 89 :QYPGFVKNLVKLGK 3e6eA 47 :GAVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3e6eA 61 :TGFCVALLDEAIELREAGVQ T0547 127 :APITVNGFKDRE 3e6eA 81 :DPILILSVVDLA T0547 141 :NIGF 3e6eA 93 :YVPL T0547 146 :AAEMG 3e6eA 97 :LIQYD T0547 153 :ITLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 102 :LSVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :S 3e6eA 138 :G T0547 203 :KFG 3e6eA 139 :RIG T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 226 :QFTMIHFHLGS 3e6eA 162 :LWEGIFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTEL 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVL T0547 264 :KNLK 3e6eA 196 :EELP T0547 268 :AINLG 3e6eA 201 :YVHVS T0547 291 :TLREYA 3e6eA 206 :NSATAL T0547 306 :IAEQKKDLEPD 3e6eA 212 :WHPDVPGNMIR T0547 326 :AANHAVLIAPVLELFSQ 3e6eA 243 :LKPALRLTSELIHVKRL T0547 343 :EYAENKLILK 3e6eA 274 :EAEEWIGTVP T0547 353 :KQNPKLIDE 3e6eA 288 :DGWLRHLQG T0547 368 :SIKPSN 3e6eA 298 :TVLVNG T0547 380 :DSIDHLESI 3e6eA 304 :KRCEIVGRV T0547 391 :LFDLGYVDLQ 3e6eA 313 :CMDQCMIRLA T0547 402 :RSNAEILT 3e6eA 325 :VPVGPVVT T0547 410 :H 3e6eA 334 :V T0547 420 :LGDKQNPAD 3e6eA 335 :GKDGNEENT T0547 556 :ILDTLEDLDYDIHAIM 3e6eA 344 :LQMVAEKLETIHYEVA Number of specific fragments extracted= 28 number of extra gaps= 3 total=20278 Will force an alignment to be made, even if fragment is small Number of alignments=926 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)E542 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)K543 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 3e6eA 7 :RPTRLHIDTQAITENVQKECQRL T0547 76 :KGGFNAVYPLKVNQ 3e6eA 30 :PEGTALFAVVKANG T0547 90 :YPGFVKNLVKLGK 3e6eA 48 :AVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILILSVVDLAY T0547 142 :IGF 3e6eA 94 :VPL T0547 146 :AAEMGH 3e6eA 97 :LIQYDL T0547 153 :I 3e6eA 103 :S T0547 155 :LTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 104 :VTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGVG 3e6eA 138 :GRIGF T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 226 :QFTMIHFHLGS 3e6eA 162 :LWEGIFTHFST T0547 237 :QITEIHPL 3e6eA 174 :DEIDTSYF T0547 249 :NEAGNIYTELRKMGAKNLKAINLG 3e6eA 182 :EKQAGRFKAVLAVLEELPRYVHVS T0547 291 :TLREYA 3e6eA 206 :NSATAL T0547 306 :IAEQKK 3e6eA 212 :WHPDVP T0547 315 :PDI 3e6eA 218 :GNM T0547 319 :IESGRFVAA 3e6eA 221 :IRYGVAMYG T0547 328 :NHAVLIAPVLELFSQ 3e6eA 245 :PALRLTSELIHVKRL T0547 343 :EYAENKLILK 3e6eA 274 :EAEEWIGTVP T0547 486 :DGEISYSKDKP 3e6eA 288 :DGWLRHLQGFT T0547 500 :HD 3e6eA 310 :GR T0547 531 :THPTEAIISIN 3e6eA 312 :VCMDQCMIRLA T0547 544 :GYEVEGIIEAQ 3e6eA 328 :GPVVTLVGKDG T0547 555 :SILDTLEDLDYDI 3e6eA 343 :TLQMVAEKLETIH Number of specific fragments extracted= 25 number of extra gaps= 3 total=20303 Will force an alignment to be made, even if fragment is small Number of alignments=927 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)C483 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)D484 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3e6eA 6 :HRPTRLHIDTQAITENVQKECQRL T0547 76 :KGGFNAVYPLKVN 3e6eA 30 :PEGTALFAVVKAN T0547 89 :QYPGFVKNLVKLGK 3e6eA 47 :GAVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILILSVVDLAY T0547 142 :IGF 3e6eA 94 :VPL T0547 146 :AAEMGH 3e6eA 97 :LIQYDL T0547 153 :I 3e6eA 103 :S T0547 155 :LTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 104 :VTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGVG 3e6eA 138 :GRIGF T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 224 :L 3e6eA 161 :F T0547 226 :QFTMIHFHLGSQITEIHPLK 3e6eA 162 :LWEGIFTHFSTADEIDTSYF T0547 249 :NEAGNIYTELRKMGAKNLKAINLG 3e6eA 182 :EKQAGRFKAVLAVLEELPRYVHVS T0547 302 :ILKNIAEQKKDLEPD 3e6eA 208 :ATALWHPDVPGNMIR T0547 321 :SGRFVAA 3e6eA 223 :YGVAMYG T0547 328 :NHAVLIAPVLELFSQ 3e6eA 245 :PALRLTSELIHVKRL T0547 343 :EYAENKLILKKQ 3e6eA 274 :EAEEWIGTVPIG T0547 366 :YKSIKPSNALEYL 3e6eA 286 :YADGWLRHLQGFT T0547 379 :HDSIDHL 3e6eA 303 :GKRCEIV T0547 470 :EEPTRSASIWDIT 3e6eA 310 :GRVCMDQCMIRLA T0547 485 :S 3e6eA 325 :V T0547 531 :THPTEAIISINEKGYEV 3e6eA 326 :PVGPVVTLVGKDGNEEN T0547 555 :SILDTLEDLDYDIHAIMDI 3e6eA 343 :TLQMVAEKLETIHYEVACT Number of specific fragments extracted= 23 number of extra gaps= 3 total=20326 Will force an alignment to be made, even if fragment is small Number of alignments=928 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)R39 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 Warning: unaligning (T0547)N601 because last residue in template chain is (3e6eA)N371 T0547 41 :DGYKGPLLL 3e6eA 3 :VGWHRPTRL T0547 50 :RFPHLIQKQIENIYGNFN 3e6eA 13 :IDTQAITENVQKECQRLP T0547 77 :GGFNAVYPLKVNQYPG 3e6eA 31 :EGTALFAVVKANGYGH T0547 93 :FVKNLVKLGK 3e6eA 51 :SAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILIL T0547 133 :GFKDRELINIGF 3e6eA 87 :SVVDLAYVPLLI T0547 148 :EMGHNIT 3e6eA 99 :QYDLSVT T0547 156 :TIEGLNELEAIIDIAKE 3e6eA 106 :VATQEWLEAALQQLTPE T0547 174 :FKPKPNIGLRV 3e6eA 123 :SNTPLRVHLKV T0547 187 :H 3e6eA 134 :D T0547 190 :GV 3e6eA 137 :MG T0547 203 :KFGL 3e6eA 139 :RIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :LEQFT 3e6eA 161 :FLWEG T0547 230 :IHFHLGS 3e6eA 166 :IFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTELRKMG 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVLEELP T0547 267 :KAINLGGGLAVEYSQFKNEKSRNYTLREYA 3e6eA 200 :RYVHVSNSATALWHPDVPGNMIRYGVAMYG T0547 299 :VVFILKNIAEQKKD 3e6eA 230 :LNPSGNKLAPSYAL T0547 327 :ANHAVLIAPVLELFSQE 3e6eA 244 :KPALRLTSELIHVKRLA T0547 345 :AE 3e6eA 277 :EW T0547 348 :KLILKK 3e6eA 279 :IGTVPI T0547 354 :QNPK 3e6eA 286 :YADG T0547 377 :YLHDSIDHLESILTLFDLGY 3e6eA 297 :FTVLVNGKRCEIVGRVCMDQ T0547 397 :VDLQ 3e6eA 319 :IRLA T0547 402 :RSNAEILT 3e6eA 325 :VPVGPVVT T0547 434 :DEVQERYLVNF 3e6eA 333 :LVGKDGNEENT T0547 553 :AQSILDTLEDLDYDIHAIMD 3e6eA 344 :LQMVAEKLETIHYEVACTFS T0547 594 :GELYLFL 3e6eA 364 :QRIPREY Number of specific fragments extracted= 28 number of extra gaps= 3 total=20354 Will force an alignment to be made, even if fragment is small Number of alignments=929 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 Warning: unaligning (T0547)D566 because last residue in template chain is (3e6eA)N371 T0547 41 :DGYKGP 3e6eA 3 :VGWHRP T0547 47 :LLLRFPHLIQKQIENIYGNF 3e6eA 10 :RLHIDTQAITENVQKECQRL T0547 77 :G 3e6eA 30 :P T0547 78 :GFNAVYPLKVNQY 3e6eA 32 :GTALFAVVKANGY T0547 91 :PGFVKNLVKLGK 3e6eA 49 :VESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3e6eA 61 :TGFCVALLDEAIELREAGVQ T0547 127 :APITVNGFKDRELINIGF 3e6eA 81 :DPILILSVVDLAYVPLLI T0547 150 :GHNITLTIEGLNELEAIID 3e6eA 99 :QYDLSVTVATQEWLEAALQ T0547 173 :R 3e6eA 118 :Q T0547 174 :FKPKPNIGLRV 3e6eA 123 :SNTPLRVHLKV T0547 187 :H 3e6eA 134 :D T0547 190 :GV 3e6eA 137 :MG T0547 203 :KFGL 3e6eA 139 :RIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :LEQFT 3e6eA 161 :FLWEG T0547 230 :IHFHLGS 3e6eA 166 :IFTHFST T0547 237 :QITEIHPLKKALNEAGNIYT 3e6eA 174 :DEIDTSYFEKQAGRFKAVLA T0547 260 :KMGA 3e6eA 194 :VLEE T0547 265 :NLKAINLGGGLAVEYSQ 3e6eA 198 :LPRYVHVSNSATALWHP T0547 282 :FKNEKSRN 3e6eA 216 :VPGNMIRY T0547 291 :T 3e6eA 224 :G T0547 307 :AEQKK 3e6eA 225 :VAMYG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 3e6eA 230 :LNPSGNKLAPSYALKPALRLTSELIHVKRLA T0547 344 :YAENKLILKK 3e6eA 275 :AEEWIGTVPI T0547 354 :QNPKLIDEL 3e6eA 286 :YADGWLRHL T0547 373 :NALE 3e6eA 295 :QGFT T0547 377 :YLHDSIDHLE 3e6eA 304 :KRCEIVGRVC T0547 394 :LGY 3e6eA 314 :MDQ T0547 397 :VDLQ 3e6eA 319 :IRLA T0547 402 :RSNAEILTHLITKKAILL 3e6eA 325 :VPVGPVVTLVGKDGNEEN T0547 449 :SMPDFWGLE 3e6eA 343 :TLQMVAEKL T0547 553 :AQSILDTLEDL 3e6eA 352 :ETIHYEVACTF T0547 565 :Y 3e6eA 370 :Y Number of specific fragments extracted= 33 number of extra gaps= 3 total=20387 Will force an alignment to be made, even if fragment is small Number of alignments=930 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)Q400 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 Warning: unaligning (T0547)N541 because last residue in template chain is (3e6eA)N371 T0547 41 :DGYKGPLLL 3e6eA 3 :VGWHRPTRL T0547 50 :RFPHLIQKQIENIYGNFN 3e6eA 13 :IDTQAITENVQKECQRLP T0547 78 :GFNAVYPLKVNQY 3e6eA 32 :GTALFAVVKANGY T0547 91 :PGFVKNLVKLGK 3e6eA 49 :VESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3e6eA 61 :TGFCVALLDEAIELREAGVQ T0547 127 :APITVNGFKDRELINIGF 3e6eA 81 :DPILILSVVDLAYVPLLI T0547 150 :GHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRV 3e6eA 99 :QYDLSVTVATQEWLEAALQQLTPESNTPLRVHLKV T0547 187 :H 3e6eA 134 :D T0547 190 :GV 3e6eA 137 :MG T0547 203 :KFGL 3e6eA 139 :RIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :LEQFT 3e6eA 161 :FLWEG T0547 230 :IHFHLG 3e6eA 166 :IFTHFS T0547 236 :SQITEIHPLKKALNEAGNIYTEL 3e6eA 173 :ADEIDTSYFEKQAGRFKAVLAVL T0547 262 :GA 3e6eA 196 :EE T0547 265 :NLKAINLGGGLAVEYSQFK 3e6eA 198 :LPRYVHVSNSATALWHPDV T0547 291 :TLREYA 3e6eA 217 :PGNMIR T0547 313 :LEPDIF 3e6eA 223 :YGVAMY T0547 319 :IESGRFVAANHAVLIAPVLELFSQE 3e6eA 236 :KLAPSYALKPALRLTSELIHVKRLA T0547 344 :YAENKLILKK 3e6eA 275 :AEEWIGTVPI T0547 354 :QNPKLIDELYDLYKSIK 3e6eA 286 :YADGWLRHLQGFTVLVN T0547 376 :EYLHDSIDHLE 3e6eA 303 :GKRCEIVGRVC T0547 389 :LTLFDLGYV 3e6eA 314 :MDQCMIRLA T0547 402 :RSNAEILTHLITKKAIL 3e6eA 325 :VPVGPVVTLVGKDGNEE T0547 427 :ADLLAIQDEVQERYLVNFSLFQS 3e6eA 342 :NTLQMVAEKLETIHYEVACTFSQ T0547 535 :EAIISI 3e6eA 365 :RIPREY Number of specific fragments extracted= 26 number of extra gaps= 3 total=20413 Will force an alignment to be made, even if fragment is small Number of alignments=931 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 Warning: unaligning (T0547)S608 because last residue in template chain is (3e6eA)N371 T0547 41 :DGYKGPL 3e6eA 3 :VGWHRPT T0547 48 :LLRFPHLIQKQIENIYGNF 3e6eA 11 :LHIDTQAITENVQKECQRL T0547 77 :G 3e6eA 30 :P T0547 78 :GFNAVYPLKVN 3e6eA 32 :GTALFAVVKAN T0547 89 :QYPGFVKNLVKLGK 3e6eA 47 :GAVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3e6eA 61 :TGFCVALLDEAIELREAGVQ T0547 127 :APITVNGFKDRELINIGF 3e6eA 81 :DPILILSVVDLAYVPLLI T0547 148 :EMGH 3e6eA 99 :QYDL T0547 154 :TLTIEGLNELEAIIDIAKERFKPKPNIGLRV 3e6eA 103 :SVTVATQEWLEAALQQLTPESNTPLRVHLKV T0547 187 :H 3e6eA 134 :D T0547 190 :GV 3e6eA 137 :MG T0547 203 :KFGL 3e6eA 139 :RIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :LEQFT 3e6eA 161 :FLWEG T0547 230 :IHFHLGS 3e6eA 166 :IFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTEL 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVL T0547 262 :GA 3e6eA 196 :EE T0547 265 :NLKAINLGGGLAVEYSQ 3e6eA 198 :LPRYVHVSNSATALWHP T0547 282 :FKNEKSR 3e6eA 216 :VPGNMIR T0547 291 :TLR 3e6eA 223 :YGV T0547 308 :EQKK 3e6eA 226 :AMYG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 3e6eA 230 :LNPSGNKLAPSYALKPALRLTSELIHVKRLA T0547 344 :YAENKLILKK 3e6eA 275 :AEEWIGTVPI T0547 354 :QNPKLIDELYDLY 3e6eA 286 :YADGWLRHLQGFT T0547 377 :YLHDSIDHLE 3e6eA 304 :KRCEIVGRVC T0547 389 :LTLFDLGY 3e6eA 314 :MDQCMIRL T0547 400 :Q 3e6eA 322 :A T0547 402 :RSNAEILTHLITKKAILL 3e6eA 325 :VPVGPVVTLVGKDGNEEN T0547 449 :SMPDFWGL 3e6eA 343 :TLQMVAEK T0547 486 :DG 3e6eA 351 :LE T0547 554 :QSILDTLEDL 3e6eA 353 :TIHYEVACTF T0547 604 :GYLK 3e6eA 367 :PREY Number of specific fragments extracted= 32 number of extra gaps= 3 total=20445 Will force an alignment to be made, even if fragment is small Number of alignments=932 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)Q400 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 Warning: unaligning (T0547)I609 because last residue in template chain is (3e6eA)N371 T0547 1 :MMD 3e6eA 2 :VVG T0547 41 :DGYKG 3e6eA 5 :WHRPT T0547 47 :LLLRFPHLIQKQIENIYGNF 3e6eA 10 :RLHIDTQAITENVQKECQRL T0547 77 :G 3e6eA 30 :P T0547 78 :GFNAVYPLKV 3e6eA 32 :GTALFAVVKA T0547 88 :NQYPGFVKNLVKLGK 3e6eA 46 :HGAVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3e6eA 61 :TGFCVALLDEAIELREAGVQ T0547 127 :APITVNGFKDRELINIGF 3e6eA 81 :DPILILSVVDLAYVPLLI T0547 148 :EMGH 3e6eA 99 :QYDL T0547 153 :IT 3e6eA 103 :SV T0547 156 :TIEGLNELEAIIDIAKERFKPKPNIGLRV 3e6eA 105 :TVATQEWLEAALQQLTPESNTPLRVHLKV T0547 187 :H 3e6eA 134 :D T0547 190 :GV 3e6eA 137 :MG T0547 203 :KFGL 3e6eA 139 :RIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :LEQFT 3e6eA 161 :FLWEG T0547 230 :IHFHLG 3e6eA 166 :IFTHFS T0547 236 :SQITEIHPLKKALNEAGNIYTEL 3e6eA 173 :ADEIDTSYFEKQAGRFKAVLAVL T0547 262 :GA 3e6eA 196 :EE T0547 265 :NLKAINLGG 3e6eA 198 :LPRYVHVSN T0547 292 :LREYA 3e6eA 207 :SATAL T0547 306 :IAEQ 3e6eA 212 :WHPD T0547 313 :LEPDIFI 3e6eA 216 :VPGNMIR T0547 321 :SGRFVAAN 3e6eA 223 :YGVAMYGL T0547 329 :HAVLIAPVLELFSQE 3e6eA 246 :ALRLTSELIHVKRLA T0547 344 :YAENKLILKK 3e6eA 275 :AEEWIGTVPI T0547 354 :QNPKLIDELYD 3e6eA 286 :YADGWLRHLQG T0547 375 :LE 3e6eA 297 :FT T0547 377 :YLHDSIDHLE 3e6eA 304 :KRCEIVGRVC T0547 394 :LGYV 3e6eA 314 :MDQC T0547 399 :L 3e6eA 322 :A T0547 402 :RSNAEILTHLI 3e6eA 325 :VPVGPVVTLVG T0547 435 :EVQERYL 3e6eA 336 :KDGNEEN T0547 555 :SILDTLEDLDYD 3e6eA 343 :TLQMVAEKLETI T0547 593 :LGELYLFLNDNGYLKS 3e6eA 355 :HYEVACTFSQRIPREY Number of specific fragments extracted= 35 number of extra gaps= 3 total=20480 Will force an alignment to be made, even if fragment is small Number of alignments=933 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)Q400 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 Warning: unaligning (T0547)S608 because last residue in template chain is (3e6eA)N371 T0547 1 :MM 3e6eA 2 :VV T0547 42 :GYKGP 3e6eA 4 :GWHRP T0547 47 :LLLRFPHLIQKQIENIYGNF 3e6eA 10 :RLHIDTQAITENVQKECQRL T0547 77 :G 3e6eA 30 :P T0547 78 :GFNAVYPLKVNQY 3e6eA 32 :GTALFAVVKANGY T0547 91 :PGFVKNLVKLGK 3e6eA 49 :VESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILIL T0547 133 :GFKDRELINIGF 3e6eA 87 :SVVDLAYVPLLI T0547 148 :EMGH 3e6eA 99 :QYDL T0547 153 :IT 3e6eA 103 :SV T0547 156 :TIEGLNELEAIIDIAKERFKPKPNIGLRV 3e6eA 105 :TVATQEWLEAALQQLTPESNTPLRVHLKV T0547 187 :H 3e6eA 134 :D T0547 190 :GV 3e6eA 137 :MG T0547 203 :KFGL 3e6eA 139 :RIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :LEQFT 3e6eA 161 :FLWEG T0547 230 :IHFHLGS 3e6eA 166 :IFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTEL 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVL T0547 262 :GA 3e6eA 196 :EE T0547 265 :NLKAINLGG 3e6eA 198 :LPRYVHVSN T0547 301 :FILKNIAEQKKDLEPDI 3e6eA 207 :SATALWHPDVPGNMIRY T0547 320 :ESGRFVAANHAVLIAPVLELFSQE 3e6eA 237 :LAPSYALKPALRLTSELIHVKRLA T0547 344 :YAENKLILKK 3e6eA 275 :AEEWIGTVPI T0547 354 :QNPKLIDE 3e6eA 286 :YADGWLRH T0547 372 :SNALE 3e6eA 294 :LQGFT T0547 377 :YLHDSIDHLE 3e6eA 304 :KRCEIVGRVC T0547 389 :LTLFDLGY 3e6eA 314 :MDQCMIRL T0547 399 :L 3e6eA 322 :A T0547 402 :RSNAEILTHLITKKAILLL 3e6eA 325 :VPVGPVVTLVGKDGNEENT T0547 574 :LNERISNSKLVN 3e6eA 344 :LQMVAEKLETIH T0547 593 :LGELYLFLNDNGYLK 3e6eA 356 :YEVACTFSQRIPREY Number of specific fragments extracted= 31 number of extra gaps= 3 total=20511 Will force an alignment to be made, even if fragment is small Number of alignments=934 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 50 :RFPHLIQKQIENIYGNFN 3e6eA 13 :IDTQAITENVQKECQRLP T0547 77 :GGFNAVYPLKVNQYPG 3e6eA 31 :EGTALFAVVKANGYGH T0547 93 :FVKNLVKLGK 3e6eA 51 :SAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILIL T0547 133 :GFKDRELINIGF 3e6eA 87 :SVVDLAYVPLLI T0547 148 :EMGHNIT 3e6eA 99 :QYDLSVT T0547 156 :TIEGLNELEAIIDIAKE 3e6eA 106 :VATQEWLEAALQQLTPE T0547 174 :FKPKPNIGLRV 3e6eA 123 :SNTPLRVHLKV T0547 187 :H 3e6eA 134 :D T0547 190 :GV 3e6eA 137 :MG T0547 203 :KFGL 3e6eA 139 :RIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :LEQFT 3e6eA 161 :FLWEG T0547 230 :IHFHLGS 3e6eA 166 :IFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTELRKMG 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVLEELP T0547 267 :KAINLGGGLAVEYSQFKNEKSRNYTLREYA 3e6eA 200 :RYVHVSNSATALWHPDVPGNMIRYGVAMYG T0547 299 :VVFILKNIAEQKKD 3e6eA 230 :LNPSGNKLAPSYAL T0547 327 :ANHAVLIAPVLELFSQE 3e6eA 244 :KPALRLTSELIHVKRLA T0547 345 :AE 3e6eA 277 :EW T0547 348 :KLILKK 3e6eA 279 :IGTVPI T0547 354 :QNPK 3e6eA 286 :YADG T0547 377 :YLHDSIDHLESILTLFDLGY 3e6eA 297 :FTVLVNGKRCEIVGRVCMDQ T0547 397 :VDLQ 3e6eA 319 :IRLA T0547 402 :RSNAEILT 3e6eA 325 :VPVGPVVT Number of specific fragments extracted= 24 number of extra gaps= 3 total=20535 Will force an alignment to be made, even if fragment is small Number of alignments=935 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 41 :DGYKGP 3e6eA 3 :VGWHRP T0547 47 :LLLRFPHLIQKQIENIYGNF 3e6eA 10 :RLHIDTQAITENVQKECQRL T0547 77 :G 3e6eA 30 :P T0547 78 :GFNAVYPLKVNQY 3e6eA 32 :GTALFAVVKANGY T0547 91 :PGFVKNLVKLGK 3e6eA 49 :VESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3e6eA 61 :TGFCVALLDEAIELREAGVQ T0547 127 :APITVNGFKDRELINIGF 3e6eA 81 :DPILILSVVDLAYVPLLI T0547 150 :GHNITLTIEGLNELEAIID 3e6eA 99 :QYDLSVTVATQEWLEAALQ T0547 173 :R 3e6eA 118 :Q T0547 174 :FKPKPNIGLRV 3e6eA 123 :SNTPLRVHLKV T0547 187 :H 3e6eA 134 :D T0547 190 :GV 3e6eA 137 :MG T0547 203 :KFGL 3e6eA 139 :RIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :LEQFT 3e6eA 161 :FLWEG T0547 230 :IHFHLGS 3e6eA 166 :IFTHFST T0547 237 :QITEIHPLKKALNEAGNIYT 3e6eA 174 :DEIDTSYFEKQAGRFKAVLA T0547 260 :KMGA 3e6eA 194 :VLEE T0547 265 :NLKAINLGGGLAVEYSQ 3e6eA 198 :LPRYVHVSNSATALWHP T0547 282 :FKNEKSRN 3e6eA 216 :VPGNMIRY T0547 291 :T 3e6eA 224 :G T0547 307 :AEQKK 3e6eA 225 :VAMYG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 3e6eA 230 :LNPSGNKLAPSYALKPALRLTSELIHVKRLA T0547 344 :YAENKLILKK 3e6eA 275 :AEEWIGTVPI T0547 354 :QNPKLIDEL 3e6eA 286 :YADGWLRHL T0547 373 :NALE 3e6eA 295 :QGFT T0547 377 :YLHDSIDHLE 3e6eA 304 :KRCEIVGRVC T0547 394 :LGY 3e6eA 314 :MDQ T0547 397 :VDLQ 3e6eA 319 :IRLA T0547 402 :RSNAEILTHLITKKAILL 3e6eA 325 :VPVGPVVTLVGKDGNEEN T0547 449 :SMPDFWGLE 3e6eA 343 :TLQMVAEKL T0547 553 :AQSILDTLEDL 3e6eA 352 :ETIHYEVACTF Number of specific fragments extracted= 32 number of extra gaps= 3 total=20567 Will force an alignment to be made, even if fragment is small Number of alignments=936 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)Q400 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 41 :DGYKGPLLL 3e6eA 3 :VGWHRPTRL T0547 50 :RFPHLIQKQIENIYGNFN 3e6eA 13 :IDTQAITENVQKECQRLP T0547 78 :GFNAVYPLKVNQY 3e6eA 32 :GTALFAVVKANGY T0547 91 :PGFVKNLVKLGK 3e6eA 49 :VESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3e6eA 61 :TGFCVALLDEAIELREAGVQ T0547 127 :APITVNGFKDRELINIGF 3e6eA 81 :DPILILSVVDLAYVPLLI T0547 150 :GHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRV 3e6eA 99 :QYDLSVTVATQEWLEAALQQLTPESNTPLRVHLKV T0547 187 :H 3e6eA 134 :D T0547 190 :GV 3e6eA 137 :MG T0547 203 :KFGL 3e6eA 139 :RIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :LEQFT 3e6eA 161 :FLWEG T0547 230 :IHFHLG 3e6eA 166 :IFTHFS T0547 236 :SQITEIHPLKKALNEAGNIYTEL 3e6eA 173 :ADEIDTSYFEKQAGRFKAVLAVL T0547 262 :GA 3e6eA 196 :EE T0547 265 :NLKAINLGGGLAVEYSQFK 3e6eA 198 :LPRYVHVSNSATALWHPDV T0547 291 :TLREYA 3e6eA 217 :PGNMIR T0547 313 :LEPDIF 3e6eA 223 :YGVAMY T0547 319 :IESGRFVAANHAVLIAPVLELFSQE 3e6eA 236 :KLAPSYALKPALRLTSELIHVKRLA T0547 344 :YAENKLILKK 3e6eA 275 :AEEWIGTVPI T0547 354 :QNPKLIDELYDLYKSIK 3e6eA 286 :YADGWLRHLQGFTVLVN T0547 376 :EYLHDSIDHLE 3e6eA 303 :GKRCEIVGRVC T0547 389 :LTLFDLGYV 3e6eA 314 :MDQCMIRLA T0547 402 :RSNAEILTHLITKKAIL 3e6eA 325 :VPVGPVVTLVGKDGNEE T0547 427 :ADLLAIQDEVQERYLVNFSLFQ 3e6eA 342 :NTLQMVAEKLETIHYEVACTFS Number of specific fragments extracted= 25 number of extra gaps= 3 total=20592 Will force an alignment to be made, even if fragment is small Number of alignments=937 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 43 :YKGPL 3e6eA 5 :WHRPT T0547 48 :LLRFPHLIQKQIENIYGNF 3e6eA 11 :LHIDTQAITENVQKECQRL T0547 77 :G 3e6eA 30 :P T0547 78 :GFNAVYPLKVN 3e6eA 32 :GTALFAVVKAN T0547 89 :QYPGFVKNLVKLGK 3e6eA 47 :GAVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3e6eA 61 :TGFCVALLDEAIELREAGVQ T0547 127 :APITVNGFKDRELINIGF 3e6eA 81 :DPILILSVVDLAYVPLLI T0547 148 :EMGH 3e6eA 99 :QYDL T0547 154 :TLTIEGLNELEAIIDIAKERFKPKPNIGLRV 3e6eA 103 :SVTVATQEWLEAALQQLTPESNTPLRVHLKV T0547 187 :H 3e6eA 134 :D T0547 190 :GV 3e6eA 137 :MG T0547 203 :KFGL 3e6eA 139 :RIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :LEQFT 3e6eA 161 :FLWEG T0547 230 :IHFHLGS 3e6eA 166 :IFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTEL 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVL T0547 262 :GA 3e6eA 196 :EE T0547 265 :NLKAINLGGGLAVEYSQ 3e6eA 198 :LPRYVHVSNSATALWHP T0547 282 :FKNEKSR 3e6eA 216 :VPGNMIR T0547 291 :TLR 3e6eA 223 :YGV T0547 308 :EQKK 3e6eA 226 :AMYG T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 3e6eA 230 :LNPSGNKLAPSYALKPALRLTSELIHVKRLA T0547 344 :YAENKLILKK 3e6eA 275 :AEEWIGTVPI T0547 354 :QNPKLIDELYDLY 3e6eA 286 :YADGWLRHLQGFT T0547 377 :YLHDSIDHLE 3e6eA 304 :KRCEIVGRVC T0547 389 :LTLFDLGY 3e6eA 314 :MDQCMIRL T0547 400 :Q 3e6eA 322 :A T0547 402 :RSNAEILTHLITKKAILL 3e6eA 325 :VPVGPVVTLVGKDGNEEN T0547 449 :SMPDFWGL 3e6eA 343 :TLQMVAEK T0547 486 :DG 3e6eA 351 :LE T0547 554 :QSILDTL 3e6eA 353 :TIHYEVA Number of specific fragments extracted= 31 number of extra gaps= 3 total=20623 Will force an alignment to be made, even if fragment is small Number of alignments=938 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)Q400 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 42 :GYKG 3e6eA 6 :HRPT T0547 47 :LLLRFPHLIQKQIENIYGNF 3e6eA 10 :RLHIDTQAITENVQKECQRL T0547 77 :G 3e6eA 30 :P T0547 78 :GFNAVYPLKV 3e6eA 32 :GTALFAVVKA T0547 88 :NQYPGFVKNLVKLGK 3e6eA 46 :HGAVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3e6eA 61 :TGFCVALLDEAIELREAGVQ T0547 127 :APITVNGFKDRELINIGF 3e6eA 81 :DPILILSVVDLAYVPLLI T0547 148 :EMGH 3e6eA 99 :QYDL T0547 153 :IT 3e6eA 103 :SV T0547 156 :TIEGLNELEAIIDIAKERFKPKPNIGLRV 3e6eA 105 :TVATQEWLEAALQQLTPESNTPLRVHLKV T0547 187 :H 3e6eA 134 :D T0547 190 :GV 3e6eA 137 :MG T0547 203 :KFGL 3e6eA 139 :RIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :LEQFT 3e6eA 161 :FLWEG T0547 230 :IHFHLG 3e6eA 166 :IFTHFS T0547 236 :SQITEIHPLKKALNEAGNIYTEL 3e6eA 173 :ADEIDTSYFEKQAGRFKAVLAVL T0547 262 :GA 3e6eA 196 :EE T0547 265 :NLKAINLGG 3e6eA 198 :LPRYVHVSN T0547 292 :LREYA 3e6eA 207 :SATAL T0547 306 :IAEQ 3e6eA 212 :WHPD T0547 313 :LEPDIFI 3e6eA 216 :VPGNMIR T0547 321 :SGRFVAAN 3e6eA 223 :YGVAMYGL T0547 329 :HAVLIAPVLELFSQE 3e6eA 246 :ALRLTSELIHVKRLA T0547 344 :YAENKLILKK 3e6eA 275 :AEEWIGTVPI T0547 354 :QNPKLIDELYD 3e6eA 286 :YADGWLRHLQG T0547 375 :LE 3e6eA 297 :FT T0547 377 :YLHDSIDHLE 3e6eA 304 :KRCEIVGRVC T0547 394 :LGYV 3e6eA 314 :MDQC T0547 399 :L 3e6eA 322 :A T0547 402 :RSNAEILTHLITKK 3e6eA 325 :VPVGPVVTLVGKDG T0547 424 :QNPADLLAIQDEVQ 3e6eA 339 :NEENTLQMVAEKLE T0547 554 :QSILDTLED 3e6eA 353 :TIHYEVACT Number of specific fragments extracted= 33 number of extra gaps= 3 total=20656 Will force an alignment to be made, even if fragment is small Number of alignments=939 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)Q400 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 43 :YKGP 3e6eA 5 :WHRP T0547 47 :LLLRFPHLIQKQIENIYGNF 3e6eA 10 :RLHIDTQAITENVQKECQRL T0547 77 :G 3e6eA 30 :P T0547 78 :GFNAVYPLKVNQY 3e6eA 32 :GTALFAVVKANGY T0547 91 :PGFVKNLVKLGK 3e6eA 49 :VESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILIL T0547 133 :GFKDRELINIGF 3e6eA 87 :SVVDLAYVPLLI T0547 148 :EMGH 3e6eA 99 :QYDL T0547 153 :IT 3e6eA 103 :SV T0547 156 :TIEGLNELEAIIDIAKERFKPKPNIGLRV 3e6eA 105 :TVATQEWLEAALQQLTPESNTPLRVHLKV T0547 187 :H 3e6eA 134 :D T0547 190 :GV 3e6eA 137 :MG T0547 203 :KFGL 3e6eA 139 :RIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 224 :LEQFT 3e6eA 161 :FLWEG T0547 230 :IHFHLGS 3e6eA 166 :IFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTEL 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVL T0547 262 :GA 3e6eA 196 :EE T0547 265 :NLKAINLGG 3e6eA 198 :LPRYVHVSN T0547 301 :FILKNIAEQKKDLEPDI 3e6eA 207 :SATALWHPDVPGNMIRY T0547 320 :ESGRFVAANHAVLIAPVLELFSQE 3e6eA 237 :LAPSYALKPALRLTSELIHVKRLA T0547 344 :YAENKLILKK 3e6eA 275 :AEEWIGTVPI T0547 354 :QNPKLIDE 3e6eA 286 :YADGWLRH T0547 372 :SNALE 3e6eA 294 :LQGFT T0547 377 :YLHDSIDHLE 3e6eA 304 :KRCEIVGRVC T0547 389 :LTLFDLGY 3e6eA 314 :MDQCMIRL T0547 399 :L 3e6eA 322 :A T0547 402 :RSNAEILTHLITKKAILLL 3e6eA 325 :VPVGPVVTLVGKDGNEENT T0547 574 :LNERISNSKLV 3e6eA 344 :LQMVAEKLETI Number of specific fragments extracted= 29 number of extra gaps= 3 total=20685 Will force an alignment to be made, even if fragment is small Number of alignments=940 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)A405 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)E406 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 Warning: unaligning (T0547)K587 because last residue in template chain is (3e6eA)N371 T0547 41 :DGYKGP 3e6eA 3 :VGWHRP T0547 47 :LLLRFPHLIQKQIENIYGNFNK 3e6eA 10 :RLHIDTQAITENVQKECQRLPE T0547 78 :GFNAVYPLKVNQYPG 3e6eA 32 :GTALFAVVKANGYGH T0547 93 :FVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIE 3e6eA 48 :AVESAKAAKKGGATGFCVALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLE T0547 164 :EAIIDIAKE 3e6eA 114 :AALQQLTPE T0547 174 :FKPKPNIGLRVR 3e6eA 123 :SNTPLRVHLKVD T0547 188 :SAGVGI 3e6eA 137 :MGRIGF T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 3e6eA 161 :FLWEGIFTHFSTADEIDTSYFEKQAGRFKAVLAVLEEL T0547 277 :VEYSQ 3e6eA 199 :PRYVH T0547 282 :FKNEKSRNYTLREYANDVVFILKNIAEQKKDLE 3e6eA 207 :SATALWHPDVPGNMIRYGVAMYGLNPSGNKLAP T0547 323 :RFVAANHAVLIAPVLELFSQ 3e6eA 240 :SYALKPALRLTSELIHVKRL T0547 345 :AENKL 3e6eA 269 :ETYVT T0547 351 :LK 3e6eA 274 :EA T0547 364 :DLYKSIKPS 3e6eA 276 :EEWIGTVPI T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 3e6eA 290 :WLRHLQGFTVLVNGKRCEIVGRVCMDQCMI T0547 403 :SN 3e6eA 321 :LA T0547 428 :DLL 3e6eA 325 :VPV T0547 544 :GYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKLVND 3e6eA 328 :GPVVTLVGKDGNEENTLQMVAEKLETIHYEVACTFSQRIPREY Number of specific fragments extracted= 19 number of extra gaps= 3 total=20704 Will force an alignment to be made, even if fragment is small Number of alignments=941 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)K28 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)R402 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 29 :PAI 3e6eA 3 :VGW T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3e6eA 6 :HRPTRLHIDTQAITENVQKECQRL T0547 76 :KGGFNAVYPLKVN 3e6eA 30 :PEGTALFAVVKAN T0547 89 :QYPGFVKNLVKLGK 3e6eA 47 :GAVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILILSVVDL T0547 139 :LINIGFIAAEM 3e6eA 92 :AYVPLLIQYDL T0547 154 :TLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 103 :SVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGVGI 3e6eA 137 :MGRIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 225 :EQFTMIHFHLGSQ 3e6eA 161 :FLWEGIFTHFSTA T0547 238 :ITEIH 3e6eA 175 :EIDTS T0547 247 :ALNEAGNIYTELRKMG 3e6eA 180 :YFEKQAGRFKAVLAVL T0547 274 :GLAVEYSQF 3e6eA 196 :EELPRYVHV T0547 314 :EP 3e6eA 240 :SY T0547 325 :VAANHAVLIAPVLELFSQ 3e6eA 242 :ALKPALRLTSELIHVKRL T0547 343 :EYAENKLILKK 3e6eA 275 :AEEWIGTVPIG T0547 366 :YKSIKPSNALEYLHD 3e6eA 286 :YADGWLRHLQGFTVL T0547 381 :SIDHLESI 3e6eA 305 :RCEIVGRV T0547 391 :LFDLGYVDLQ 3e6eA 313 :CMDQCMIRLA T0547 403 :SNAEILTH 3e6eA 325 :VPVGPVVT T0547 529 :LFTHPTEAII 3e6eA 333 :LVGKDGNEEN T0547 555 :SILDTLEDLDYDIHAIM 3e6eA 343 :TLQMVAEKLETIHYEVA T0547 600 :LNDNGYLKSIGV 3e6eA 360 :CTFSQRIPREYN Number of specific fragments extracted= 23 number of extra gaps= 3 total=20727 Will force an alignment to be made, even if fragment is small Number of alignments=942 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)R39 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)R402 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 Warning: unaligning (T0547)S608 because last residue in template chain is (3e6eA)N371 T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNFNK 3e6eA 3 :VGWHRPTRLHIDTQAITENVQKECQRLPE T0547 78 :GFNAVYPLKVNQY 3e6eA 32 :GTALFAVVKANGY T0547 91 :PGFVKNLVKLG 3e6eA 49 :VESAKAAKKGG T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3e6eA 60 :ATGFCVALLDEAIELREAGVQDPILILSVVDLA T0547 140 :INIGFIAAEM 3e6eA 93 :YVPLLIQYDL T0547 154 :TLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 103 :SVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGVGI 3e6eA 137 :MGRIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 225 :EQFTMIHFHLGS 3e6eA 161 :FLWEGIFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTEL 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVL T0547 263 :AKNLKAINLGGGLAV 3e6eA 196 :EELPRYVHVSNSATA T0547 299 :V 3e6eA 211 :L T0547 309 :QKKDLEPDIFI 3e6eA 212 :WHPDVPGNMIR T0547 321 :SGRFVAA 3e6eA 223 :YGVAMYG T0547 328 :NHAVLIAPVLELFSQEY 3e6eA 245 :PALRLTSELIHVKRLAA T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKP 3e6eA 277 :EWIGTVPIGYADGWLRHLQGFTVLVNG T0547 380 :DSIDHLESI 3e6eA 304 :KRCEIVGRV T0547 391 :LFDLGYVDLQ 3e6eA 313 :CMDQCMIRLA T0547 403 :SNAEILTHLITK 3e6eA 325 :VPVGPVVTLVGK T0547 551 :IEAQ 3e6eA 337 :DGNE T0547 555 :SILDTLEDLD 3e6eA 343 :TLQMVAEKLE T0547 590 :KHILGELYLFLNDNGYLK 3e6eA 353 :TIHYEVACTFSQRIPREY Number of specific fragments extracted= 22 number of extra gaps= 3 total=20749 Will force an alignment to be made, even if fragment is small Number of alignments=943 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)K28 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 T0547 29 :PAII 3e6eA 3 :VGWH T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 3e6eA 7 :RPTRLHIDTQAITENVQKECQRLP T0547 77 :GGFNAVYPLKVN 3e6eA 31 :EGTALFAVVKAN T0547 89 :QYPGFVKNLVKLGK 3e6eA 47 :GAVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILILSVVDL T0547 139 :LINIGFIAAEM 3e6eA 92 :AYVPLLIQYDL T0547 154 :TLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 103 :SVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGVGI 3e6eA 137 :MGRIGF T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 225 :EQFTMIHFHLGS 3e6eA 161 :FLWEGIFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTEL 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVL T0547 263 :AKNLKAINL 3e6eA 196 :EELPRYVHV T0547 308 :EQKKDL 3e6eA 226 :AMYGLN T0547 314 :EPDI 3e6eA 238 :APSY T0547 326 :AANHAVLIAPVLELFSQEY 3e6eA 243 :LKPALRLTSELIHVKRLAA T0547 345 :AENKLI 3e6eA 269 :ETYVTE T0547 456 :LEQNFPIMPLDR 3e6eA 275 :AEEWIGTVPIGY T0547 485 :SDGEISYSKDK 3e6eA 287 :ADGWLRHLQGF T0547 501 :DVDVEKENYFL 3e6eA 298 :TVLVNGKRCEI T0547 512 :GF 3e6eA 310 :GR T0547 532 :HPTEAIISIN 3e6eA 313 :CMDQCMIRLA T0547 542 :EKG 3e6eA 326 :PVG T0547 545 :YEVEGIIEAQ 3e6eA 330 :VVTLVGKDGN T0547 555 :SILDTLEDLDYDIHAIMDI 3e6eA 343 :TLQMVAEKLETIHYEVACT T0547 602 :DNGYLKSIGV 3e6eA 362 :FSQRIPREYN Number of specific fragments extracted= 25 number of extra gaps= 2 total=20774 Will force an alignment to be made, even if fragment is small Number of alignments=944 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)K28 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)E542 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 3e6eA 5 :WHRPTRLHIDTQAITENVQKECQRL T0547 76 :KGGFNAVYPLKVNQ 3e6eA 30 :PEGTALFAVVKANG T0547 90 :YPGFVKNLVKLGK 3e6eA 48 :AVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILILSVVDLAY T0547 141 :NIGFIAAEM 3e6eA 94 :VPLLIQYDL T0547 154 :TLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 103 :SVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGVGI 3e6eA 137 :MGRIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 225 :EQFTMIHFHLGSQI 3e6eA 161 :FLWEGIFTHFSTAD T0547 239 :TEIHPL 3e6eA 176 :IDTSYF T0547 249 :NEAGNIYTELRKMGAKNLKAINLGG 3e6eA 182 :EKQAGRFKAVLAVLEELPRYVHVSN T0547 292 :LREYA 3e6eA 207 :SATAL T0547 309 :QKKDLEPDIFI 3e6eA 212 :WHPDVPGNMIR T0547 321 :SGRFVAA 3e6eA 223 :YGVAMYG T0547 328 :NHAVLIAPVLELFSQEYAENK 3e6eA 245 :PALRLTSELIHVKRLAAGEGI T0547 351 :LKKQ 3e6eA 266 :GYGE T0547 402 :R 3e6eA 270 :T T0547 403 :SNAEILTHLITKK 3e6eA 273 :TEAEEWIGTVPIG T0547 421 :GDKQNPADLLAIQDEV 3e6eA 286 :YADGWLRHLQGFTVLV T0547 438 :ERYLVNFSLFQSMP 3e6eA 302 :NGKRCEIVGRVCMD T0547 535 :EAIISIN 3e6eA 316 :QCMIRLA T0547 543 :KG 3e6eA 327 :VG T0547 545 :YEVEGIIEAQ 3e6eA 331 :VTLVGKDGNE T0547 555 :SILDTLEDLDYD 3e6eA 343 :TLQMVAEKLETI T0547 595 :ELYLFLNDNGYLKSIGV 3e6eA 355 :HYEVACTFSQRIPREYN Number of specific fragments extracted= 25 number of extra gaps= 3 total=20799 Will force an alignment to be made, even if fragment is small Number of alignments=945 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)K28 because first residue in template chain is (3e6eA)V2 Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)N528 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)L529 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 29 :P 3e6eA 3 :V T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNF 3e6eA 4 :GWHRPTRLHIDTQAITENVQKECQRL T0547 76 :KGGFNAVYPLKVNQ 3e6eA 30 :PEGTALFAVVKANG T0547 90 :YPGFVKNLVKLGK 3e6eA 48 :AVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELI 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILILSVVDLAYVP T0547 143 :GFIAAEMG 3e6eA 96 :LLIQYDLS T0547 154 :TLTIEGLNELEAIIDIAKE 3e6eA 104 :VTVATQEWLEAALQQLTPE T0547 174 :FKPKPNIGLRVR 3e6eA 123 :SNTPLRVHLKVD T0547 188 :S 3e6eA 137 :M T0547 202 :SKFGLTSTELIEAVNLLKE 3e6eA 138 :GRIGFLTPEETKQAVRFVQ T0547 225 :EQFTMIHFHLGSQITEIHPL 3e6eA 161 :FLWEGIFTHFSTADEIDTSY T0547 248 :LNEAGNIYTELRKMGAKNLKAINL 3e6eA 181 :FEKQAGRFKAVLAVLEELPRYVHV T0547 304 :KNIAEQKKDLEPDIFI 3e6eA 207 :SATALWHPDVPGNMIR T0547 321 :SGRFVAA 3e6eA 223 :YGVAMYG T0547 328 :NHAVLIAPVLELFSQEYAENKL 3e6eA 245 :PALRLTSELIHVKRLAAGEGIG T0547 399 :LQDR 3e6eA 267 :YGET T0547 403 :SNAEILTHLITKK 3e6eA 273 :TEAEEWIGTVPIG T0547 417 :ILLLGDKQNPADLL 3e6eA 286 :YADGWLRHLQGFTV T0547 436 :VQERYLVNFSLFQSMPD 3e6eA 300 :LVNGKRCEIVGRVCMDQ T0547 477 :SIWDIT 3e6eA 317 :CMIRLA T0547 530 :FTHPTEAIISINEKGYEV 3e6eA 325 :VPVGPVVTLVGKDGNEEN T0547 555 :SILDTLEDLDYDIHA 3e6eA 343 :TLQMVAEKLETIHYE T0547 598 :LFLNDNGYLKSIGV 3e6eA 358 :VACTFSQRIPREYN Number of specific fragments extracted= 23 number of extra gaps= 3 total=20822 Will force an alignment to be made, even if fragment is small Number of alignments=946 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 T0547 50 :RFPHLIQKQIENIYGNFNK 3e6eA 13 :IDTQAITENVQKECQRLPE T0547 78 :GFNAVYPLKVNQYPG 3e6eA 32 :GTALFAVVKANGYGH T0547 93 :FVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIE 3e6eA 48 :AVESAKAAKKGGATGFCVALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLE T0547 164 :EAIIDIAKE 3e6eA 114 :AALQQLTPE T0547 174 :FKPKPNIGLRVR 3e6eA 123 :SNTPLRVHLKVD T0547 188 :SAGVGI 3e6eA 137 :MGRIGF T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 225 :EQFTMIHFHLGS 3e6eA 161 :FLWEGIFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVLEEL Number of specific fragments extracted= 9 number of extra gaps= 2 total=20831 Will force an alignment to be made, even if fragment is small Number of alignments=947 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)R402 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 45 :GPLLLRFPHLIQKQIENIYGNF 3e6eA 8 :PTRLHIDTQAITENVQKECQRL T0547 76 :KGGFNAVYPLKVN 3e6eA 30 :PEGTALFAVVKAN T0547 89 :QYPGFVKNLVKLGK 3e6eA 47 :GAVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILILSVVDL T0547 139 :LINIGFIAAEM 3e6eA 92 :AYVPLLIQYDL T0547 154 :TLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 103 :SVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGVGI 3e6eA 137 :MGRIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 225 :EQFTMIHFHLGSQ 3e6eA 161 :FLWEGIFTHFSTA T0547 238 :ITEIH 3e6eA 175 :EIDTS T0547 247 :ALNEAGNIYTELRKMG 3e6eA 180 :YFEKQAGRFKAVLAVL T0547 274 :GLAVEYSQF 3e6eA 196 :EELPRYVHV T0547 314 :EP 3e6eA 240 :SY T0547 325 :VAANHAVLIAPVLELFSQ 3e6eA 242 :ALKPALRLTSELIHVKRL T0547 343 :EYAENKLILKK 3e6eA 275 :AEEWIGTVPIG T0547 366 :YKSIKPSNALEYLHD 3e6eA 286 :YADGWLRHLQGFTVL T0547 381 :SIDHLESI 3e6eA 305 :RCEIVGRV T0547 391 :LFDLGYVDLQ 3e6eA 313 :CMDQCMIRLA T0547 403 :SNAEILTH 3e6eA 325 :VPVGPVVT T0547 529 :LFTHPTEAII 3e6eA 333 :LVGKDGNEEN T0547 555 :SILDTLEDLDYDIHAIM 3e6eA 343 :TLQMVAEKLETIHYEVA Number of specific fragments extracted= 21 number of extra gaps= 3 total=20852 Will force an alignment to be made, even if fragment is small Number of alignments=948 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)R402 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 45 :GPLLLRFPHLIQKQIENIYGNFNK 3e6eA 8 :PTRLHIDTQAITENVQKECQRLPE T0547 78 :GFNAVYPLKVNQY 3e6eA 32 :GTALFAVVKANGY T0547 91 :PGFVKNLVKLG 3e6eA 49 :VESAKAAKKGG T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3e6eA 60 :ATGFCVALLDEAIELREAGVQDPILILSVVDLA T0547 140 :INIGFIAAEM 3e6eA 93 :YVPLLIQYDL T0547 154 :TLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 103 :SVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGVGI 3e6eA 137 :MGRIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 225 :EQFTMIHFHLGS 3e6eA 161 :FLWEGIFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTEL 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVL T0547 263 :AKNLKAINLGGGLAV 3e6eA 196 :EELPRYVHVSNSATA T0547 299 :V 3e6eA 211 :L T0547 309 :QKKDLEPDIFI 3e6eA 212 :WHPDVPGNMIR T0547 321 :SGRFVAA 3e6eA 223 :YGVAMYG T0547 328 :NHAVLIAPVLELFSQEY 3e6eA 245 :PALRLTSELIHVKRLAA T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKP 3e6eA 277 :EWIGTVPIGYADGWLRHLQGFTVLVNG T0547 380 :DSIDHLESI 3e6eA 304 :KRCEIVGRV T0547 391 :LFDLGYVDLQ 3e6eA 313 :CMDQCMIRLA T0547 403 :SNAEILTHLIT 3e6eA 325 :VPVGPVVTLVG Number of specific fragments extracted= 19 number of extra gaps= 3 total=20871 Will force an alignment to be made, even if fragment is small Number of alignments=949 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 3e6eA 7 :RPTRLHIDTQAITENVQKECQRLP T0547 77 :GGFNAVYPLKVN 3e6eA 31 :EGTALFAVVKAN T0547 89 :QYPGFVKNLVKLGK 3e6eA 47 :GAVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILILSVVDL T0547 139 :LINIGFIAAEM 3e6eA 92 :AYVPLLIQYDL T0547 154 :TLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 103 :SVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGVGI 3e6eA 137 :MGRIGF T0547 206 :LTSTELIEAVNLLK 3e6eA 143 :LTPEETKQAVRFVQ T0547 225 :EQFTMIHFHLGS 3e6eA 161 :FLWEGIFTHFST T0547 237 :QITEIHPLKKALNEAGNIYTEL 3e6eA 174 :DEIDTSYFEKQAGRFKAVLAVL T0547 263 :AKNLKAINL 3e6eA 196 :EELPRYVHV T0547 308 :EQKKDL 3e6eA 226 :AMYGLN T0547 314 :EPDI 3e6eA 238 :APSY T0547 326 :AANHAVLIAPVLELFSQEY 3e6eA 243 :LKPALRLTSELIHVKRLAA T0547 345 :AENKLI 3e6eA 269 :ETYVTE T0547 456 :LEQNFPIMPLDR 3e6eA 275 :AEEWIGTVPIGY T0547 485 :SDGEISYSKDK 3e6eA 287 :ADGWLRHLQGF T0547 501 :DVDVEKENYFL 3e6eA 298 :TVLVNGKRCEI T0547 512 :GF 3e6eA 310 :GR T0547 532 :HPTEAIISIN 3e6eA 313 :CMDQCMIRLA T0547 542 :EKG 3e6eA 326 :PVG T0547 545 :YEVEGIIEAQ 3e6eA 330 :VVTLVGKDGN T0547 555 :SILDTLEDLDYDIHAIMD 3e6eA 343 :TLQMVAEKLETIHYEVAC Number of specific fragments extracted= 23 number of extra gaps= 2 total=20894 Will force an alignment to be made, even if fragment is small Number of alignments=950 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)E220 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)E542 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 3e6eA 7 :RPTRLHIDTQAITENVQKECQRL T0547 76 :KGGFNAVYPLKVNQ 3e6eA 30 :PEGTALFAVVKANG T0547 90 :YPGFVKNLVKLGK 3e6eA 48 :AVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILILSVVDLAY T0547 141 :NIGFIAAEM 3e6eA 94 :VPLLIQYDL T0547 154 :TLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 3e6eA 103 :SVTVATQEWLEAALQQLTPESNTPLRVHLKVD T0547 188 :SAGVGI 3e6eA 137 :MGRIGF T0547 207 :TSTELIEAVNLLK 3e6eA 144 :TPEETKQAVRFVQ T0547 225 :EQFTMIHFHLGSQI 3e6eA 161 :FLWEGIFTHFSTAD T0547 239 :TEIHPL 3e6eA 176 :IDTSYF T0547 249 :NEAGNIYTELRKMGAKNLKAINLGG 3e6eA 182 :EKQAGRFKAVLAVLEELPRYVHVSN T0547 292 :LREYA 3e6eA 207 :SATAL T0547 309 :QKKDLEPDIFI 3e6eA 212 :WHPDVPGNMIR T0547 321 :SGRFVAA 3e6eA 223 :YGVAMYG T0547 328 :NHAVLIAPVLELFSQEYAENK 3e6eA 245 :PALRLTSELIHVKRLAAGEGI T0547 351 :LKKQ 3e6eA 266 :GYGE T0547 402 :R 3e6eA 270 :T T0547 403 :SNAEILTHLITKK 3e6eA 273 :TEAEEWIGTVPIG T0547 421 :GDKQNPADLLAIQDEV 3e6eA 286 :YADGWLRHLQGFTVLV T0547 438 :ERYLVNFSLFQSMP 3e6eA 302 :NGKRCEIVGRVCMD T0547 535 :EAIISIN 3e6eA 316 :QCMIRLA T0547 543 :KG 3e6eA 327 :VG T0547 545 :YEVEGIIEAQ 3e6eA 331 :VTLVGKDGNE T0547 555 :SILDTLEDLDYD 3e6eA 343 :TLQMVAEKLETI Number of specific fragments extracted= 24 number of extra gaps= 3 total=20918 Will force an alignment to be made, even if fragment is small Number of alignments=951 # 3e6eA read from all-align.a2m # found chain 3e6eA in template set Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)G136 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)G136 Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (3e6eA)H158 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)H158 Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)K159 Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE at template residue (3e6eA)E160 Warning: unaligning (T0547)N528 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3e6eA)E324 Warning: unaligning (T0547)L529 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3e6eA)E324 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3e6eA 6 :HRPTRLHIDTQAITENVQKECQRL T0547 76 :KGGFNAVYPLKVNQ 3e6eA 30 :PEGTALFAVVKANG T0547 90 :YPGFVKNLVKLGK 3e6eA 48 :AVESAKAAKKGGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELI 3e6eA 61 :TGFCVALLDEAIELREAGVQDPILILSVVDLAYVP T0547 143 :GFIAAEMG 3e6eA 96 :LLIQYDLS T0547 154 :TLTIEGLNELEAIIDIAKE 3e6eA 104 :VTVATQEWLEAALQQLTPE T0547 174 :FKPKPNIGLRVR 3e6eA 123 :SNTPLRVHLKVD T0547 188 :S 3e6eA 137 :M T0547 202 :SKFGLTSTELIEAVNLLKE 3e6eA 138 :GRIGFLTPEETKQAVRFVQ T0547 225 :EQFTMIHFHLGSQITEIHPL 3e6eA 161 :FLWEGIFTHFSTADEIDTSY T0547 248 :LNEAGNIYTELRKMGAKNLKAINL 3e6eA 181 :FEKQAGRFKAVLAVLEELPRYVHV T0547 304 :KNIAEQKKDLEPDIFI 3e6eA 207 :SATALWHPDVPGNMIR T0547 321 :SGRFVAA 3e6eA 223 :YGVAMYG T0547 328 :NHAVLIAPVLELFSQEYAENKL 3e6eA 245 :PALRLTSELIHVKRLAAGEGIG T0547 399 :LQDR 3e6eA 267 :YGET T0547 403 :SNAEILTHLITKK 3e6eA 273 :TEAEEWIGTVPIG T0547 417 :ILLLGDKQNPADLL 3e6eA 286 :YADGWLRHLQGFTV T0547 436 :VQERYLVNFSLFQSMPD 3e6eA 300 :LVNGKRCEIVGRVCMDQ T0547 477 :SIWDIT 3e6eA 317 :CMIRLA T0547 530 :FTHPTEAIISINEKGYEV 3e6eA 325 :VPVGPVVTLVGKDGNEEN T0547 555 :SILDTLEDLDYDIHAIMDI 3e6eA 343 :TLQMVAEKLETIHYEVACT Number of specific fragments extracted= 21 number of extra gaps= 3 total=20939 Will force an alignment to be made, even if fragment is small Number of alignments=952 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)R323 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 1 :MMDYGIDIWGNENFIIKNGKVCINYEK 3gwqA 9 :ATIDPYSKGLGMVPGTSIQLTDAARLE T0547 31 :IIDIVKE 3gwqA 36 :WNLLNED T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 43 :VSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKP 3gwqA 95 :WGITLATAHQVRAAYHGGVSRVLMANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQ T0547 178 :PNIGLRVRLHSA 3gwqA 166 :LQVLLELGVPGG T0547 203 :KFGLTS 3gwqA 178 :RTGVRD T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHLGS 3gwqA 185 :AQRNAVLEAITRYPDTLKLAGVELYEGV T0547 238 :ITEIHPLKKALNEAGNIYTELRKMGA 3gwqA 213 :LKEEHEVREFLQSAVAVTRELVEQER T0547 264 :KNLKAINLGGGLAVEYSQFKNEKSRN 3gwqA 240 :ARAPAVLSGAGSAWYDVVAEEFVKAS T0547 292 :LREYANDVV 3gwqA 266 :ETGKVEVVL T0547 303 :LKNIAEQKKDLEPDIFIESG 3gwqA 275 :RPGCYLTHDVGIYRKAQTDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFS 3gwqA 319 :QSIPE T0547 388 :ILTLFDLGYVDL 3gwqA 341 :GMPEPARHYRPG T0547 400 :QDRS 3gwqA 355 :APRD T0547 470 :EEPTRSASIWD 3gwqA 359 :IAASEGWEIFG T0547 482 :TCDSDGEISYS 3gwqA 370 :LMDQHAYLRIP T0547 494 :D 3gwqA 381 :A T0547 499 :LHDV 3gwqA 382 :GADL T0547 506 :KENYFLGFFLVGAYQ 3gwqA 386 :KVGDMIAFDISHPCL T0547 522 :VLGMKHNLFTHPTEAIISINEKGY 3gwqA 401 :TFDKWRQVLVVDPAYRVTEVIETF Number of specific fragments extracted= 22 number of extra gaps= 1 total=20961 Will force an alignment to be made, even if fragment is small Number of alignments=953 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)R323 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 30 :AIIDIVKE 3gwqA 35 :EWNLLNED T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 43 :VSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKP 3gwqA 95 :WGITLATAHQVRAAYHGGVSRVLMANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQ T0547 178 :PNIGLRVRLHSA 3gwqA 166 :LQVLLELGVPGG T0547 203 :KFGLTS 3gwqA 178 :RTGVRD T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHLGS 3gwqA 185 :AQRNAVLEAITRYPDTLKLAGVELYEGV T0547 238 :ITEIHPLKKALNEAGNIYTELRKMGA 3gwqA 213 :LKEEHEVREFLQSAVAVTRELVEQER T0547 264 :KNLKAINLGGGLAVEYSQFKNEKSRN 3gwqA 240 :ARAPAVLSGAGSAWYDVVAEEFVKAS T0547 292 :LREYANDVV 3gwqA 266 :ETGKVEVVL T0547 303 :LKNIAEQKKDLEPDIFIESG 3gwqA 275 :RPGCYLTHDVGIYRKAQTDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFS 3gwqA 319 :QSIPE Number of specific fragments extracted= 13 number of extra gaps= 1 total=20974 Will force an alignment to be made, even if fragment is small Number of alignments=954 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)W9 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)A326 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)A327 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 10 :GNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 10 :TIDPYSKGLGMVPGTSIQLTDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGKD 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGAW T0547 107 :GLEAGSKAELLLAMAYNNE 3gwqA 96 :GITLATAHQVRAAYHGGVS T0547 127 :APITVNGFKDRELINIGF 3gwqA 115 :RVLMANQLVGRRNMMMVA T0547 145 :IAAEMGHNITLTIEGLNELEAIIDIAKER 3gwqA 134 :LLSDPEFEFFCLVDSVEGVEQLGEFFKSV T0547 175 :KPKPNIGLRVRL 3gwqA 163 :NKQLQVLLELGV T0547 199 :GIN 3gwqA 175 :PGG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKENK 3gwqA 183 :DAAQRNAVLEAITRYP T0547 223 :LLE 3gwqA 200 :TLK T0547 227 :FTMIHFHLG 3gwqA 203 :LAGVELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELR 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELV T0547 260 :KMGA 3gwqA 238 :RFAR T0547 265 :NLKAINLGGGLAVEYSQ 3gwqA 242 :APAVLSGAGSAWYDVVA T0547 285 :EKSRNYTLREYANDVVFILKNIA 3gwqA 259 :EEFVKASETGKVEVVLRPGCYLT T0547 311 :KDLE 3gwqA 282 :HDVG T0547 317 :IFIESGRFV 3gwqA 286 :IYRKAQTDI T0547 328 :N 3gwqA 307 :G T0547 329 :HAVLIA 3gwqA 311 :ALQLWA T0547 337 :LELFS 3gwqA 319 :QSIPE T0547 346 :ENKLILK 3gwqA 324 :PDRAIIG T0547 470 :EEPTRSASIWD 3gwqA 359 :IAASEGWEIFG T0547 482 :TCDSDGEI 3gwqA 370 :LMDQHAYL T0547 494 :DKP 3gwqA 378 :RIP T0547 498 :FLHDVDV 3gwqA 381 :AGADLKV T0547 508 :NYFLGF 3gwqA 388 :GDMIAF T0547 515 :LVGAYQEVLG 3gwqA 394 :DISHPCLTFD T0547 593 :LGELYLFLND 3gwqA 404 :KWRQVLVVDP Number of specific fragments extracted= 28 number of extra gaps= 1 total=21002 Will force an alignment to be made, even if fragment is small Number of alignments=955 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)A326 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)A327 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 14 :FIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 14 :YSKGLGMVPGTSIQLTDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGKD 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGAW T0547 107 :GLEAGSKAELLLAMAYNNE 3gwqA 96 :GITLATAHQVRAAYHGGVS T0547 127 :APITVNGFKDRELINIGF 3gwqA 115 :RVLMANQLVGRRNMMMVA T0547 145 :IAAEMGHNITLTIEGLNELEAIIDIAKER 3gwqA 134 :LLSDPEFEFFCLVDSVEGVEQLGEFFKSV T0547 175 :KPKPNIGLRVRL 3gwqA 163 :NKQLQVLLELGV T0547 199 :GIN 3gwqA 175 :PGG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKENK 3gwqA 183 :DAAQRNAVLEAITRYP T0547 223 :LLE 3gwqA 200 :TLK T0547 227 :FTMIHFHLG 3gwqA 203 :LAGVELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELR 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELV T0547 260 :KMGA 3gwqA 238 :RFAR T0547 265 :NLKAINLGGGLAVEYSQ 3gwqA 242 :APAVLSGAGSAWYDVVA T0547 285 :EKSRNYTLREYANDVVFILKNIA 3gwqA 259 :EEFVKASETGKVEVVLRPGCYLT T0547 311 :KDLE 3gwqA 282 :HDVG T0547 317 :IFIESGRFV 3gwqA 286 :IYRKAQTDI T0547 328 :N 3gwqA 307 :G T0547 329 :HAVLIA 3gwqA 311 :ALQLWA T0547 337 :LELFS 3gwqA 319 :QSIPE T0547 346 :ENKLILK 3gwqA 324 :PDRAIIG T0547 470 :EEPTRSASIWD 3gwqA 359 :IAASEGWEIFG T0547 482 :TCDSDGEI 3gwqA 370 :LMDQHAYL T0547 494 :DKP 3gwqA 378 :RIP T0547 498 :FLHDVDV 3gwqA 381 :AGADLKV T0547 508 :NYFLGF 3gwqA 388 :GDMIAF T0547 515 :LVGAYQEVLG 3gwqA 394 :DISHPCLTFD T0547 533 :PTEAIISINE 3gwqA 404 :KWRQVLVVDP T0547 544 :GYEVEGIIE 3gwqA 414 :AYRVTEVIE Number of specific fragments extracted= 29 number of extra gaps= 1 total=21031 Will force an alignment to be made, even if fragment is small Number of alignments=956 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)V504 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)L515 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V516 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 1 :MMDYGIDIWGNENFIIK 3gwqA 9 :ATIDPYSKGLGMVPGTS T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEF 3gwqA 26 :IQLTDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAEYGVKL T0547 82 :VYPLKVNQYPGFVKNLVK 3gwqA 74 :APHGKTTMAPQLFRRQLE T0547 103 :DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFK 3gwqA 92 :TGAWGITLATAHQVRAAYHGGVSRVLMANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNK T0547 177 :KPNIGLRVRLHSA 3gwqA 165 :QLQVLLELGVPGG T0547 204 :FGLTSTELIEAVNLLK 3gwqA 179 :TGVRDAAQRNAVLEAI T0547 220 :ENKLLEQFTMIHFHLGSQI 3gwqA 196 :RYPDTLKLAGVELYEGVLK T0547 239 :TEIHPLKKALNEAGNIYTELRKMGA 3gwqA 217 :HEVREFLQSAVAVTRELVEQERFAR T0547 265 :NLKAINLG 3gwqA 243 :PAVLSGAG T0547 505 :EKENYFLGFF 3gwqA 307 :GLLPALQLWA T0547 517 :GAYQE 3gwqA 319 :QSIPE T0547 522 :VLGMKHNLFTHPTEAI 3gwqA 330 :GLGKRDSAFDAGMPEP T0547 538 :ISINEKGYEVEGIIEAQSILDTLEDLD 3gwqA 358 :DIAASEGWEIFGLMDQHAYLRIPAGAD T0547 568 :HAIMDILNERISNSKLVNDKQK 3gwqA 385 :LKVGDMIAFDISHPCLTFDKWR T0547 597 :YLFLNDNGYLKSIGV 3gwqA 407 :QVLVVDPAYRVTEVI Number of specific fragments extracted= 15 number of extra gaps= 1 total=21046 Will force an alignment to be made, even if fragment is small Number of alignments=957 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=21046 Will force an alignment to be made, even if fragment is small # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)W9 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)E346 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)K357 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)S368 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 10 :G 3gwqA 10 :T T0547 19 :GKVCINYEKKPAIIDIVKELRDD 3gwqA 11 :IDPYSKGLGMVPGTSIQLTDAAR T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFNK 3gwqA 42 :DVSLPAAVLYADRVEHNLKWMQAFVAE T0547 75 :YKGGFNAV 3gwqA 69 :YGVKLAPH T0547 85 :LKVNQYPGFVKNLVKLGK 3gwqA 77 :GKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3gwqA 95 :WGITLATAHQVRAAYHGGVSRVLMANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHSAGVGIW 3gwqA 162 :VNKQLQVLLELGVPGGRTGVR T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHLGSQI 3gwqA 183 :DAAQRNAVLEAITRYPDTLKLAGVELYEGVLK T0547 240 :EIHPLKKALNEAGNIYTELRKMGAK 3gwqA 215 :EEHEVREFLQSAVAVTRELVEQERF T0547 282 :FKNEKSRNYTLREYANDVVFILK 3gwqA 240 :ARAPAVLSGAGSAWYDVVAEEFV T0547 308 :EQKKDLEPDIFIESGRFVAANHAVL 3gwqA 263 :KASETGKVEVVLRPGCYLTHDVGIY T0547 339 :LFSQEYA 3gwqA 288 :RKAQTDI T0547 358 :LIDELYDLYK 3gwqA 307 :GLLPALQLWA T0547 370 :KPSNALE 3gwqA 319 :QSIPEPD T0547 380 :DSIDHLESILTLFDLGYVD 3gwqA 326 :RAIIGLGKRDSAFDAGMPE T0547 400 :Q 3gwqA 351 :P T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQ 3gwqA 353 :NEAPRDIAASEGWEIFGLMDQHAYLRIPAGADL T0547 437 :QERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRS 3gwqA 386 :KVGDMIAFDISHPCLTFDKWRQVLVVDPAYRVTEVIETF Number of specific fragments extracted= 18 number of extra gaps= 1 total=21064 Will force an alignment to be made, even if fragment is small Number of alignments=958 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)I8 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 Warning: unaligning (T0547)D503 because last residue in template chain is (3gwqA)F425 T0547 9 :WGNENFIIKN 3gwqA 10 :TIDPYSKGLG T0547 20 :KVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 3gwqA 20 :MVPGTSIQLTDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVA T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 68 :EYGVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 3gwqA 95 :WGITLATAHQVRAAYHGGVSR T0547 129 :ITVNGFKDRE 3gwqA 116 :VLMANQLVGR T0547 140 :INIGF 3gwqA 126 :RNMMM T0547 146 :AAE 3gwqA 131 :VAE T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLH 3gwqA 162 :VNKQLQVLLELGVP T0547 188 :S 3gwqA 177 :G T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHLGSQ 3gwqA 183 :DAAQRNAVLEAITRYPDTLKLAGVELYEGVL T0547 239 :TEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 214 :KEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAVEY 3gwqA 241 :RAPAVLSGAGSAWYD T0547 282 :FKNEK 3gwqA 280 :LTHDV T0547 301 :FILKNIAEQK 3gwqA 285 :GIYRKAQTDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQEY 3gwqA 319 :QSIPEPDR T0547 349 :LILKKQNPKLIDE 3gwqA 327 :AIIGLGKRDSAFD T0547 362 :L 3gwqA 341 :G T0547 367 :KSIKPSNALEYLHD 3gwqA 342 :MPEPARHYRPGNEA T0547 381 :SIDHLE 3gwqA 359 :IAASEG T0547 387 :SILTLFDLGYVD 3gwqA 369 :GLMDQHAYLRIP T0547 399 :LQDRSNAEILTHLITKKAI 3gwqA 382 :GADLKVGDMIAFDISHPCL T0547 418 :LLLGDKQN 3gwqA 402 :FDKWRQVL T0547 426 :PADLLAIQ 3gwqA 412 :DPAYRVTE T0547 498 :FLHDV 3gwqA 420 :VIETF Number of specific fragments extracted= 27 number of extra gaps= 1 total=21091 Will force an alignment to be made, even if fragment is small Number of alignments=959 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)F14 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)R323 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 15 :IIKN 3gwqA 10 :TIDP T0547 19 :GKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3gwqA 19 :GMVPGTSIQLTDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAE T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 69 :YGVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 3gwqA 95 :WGITLATAHQVRAAYHGGVSR T0547 129 :ITVNGFKDRE 3gwqA 116 :VLMANQLVGR T0547 140 :INIGF 3gwqA 126 :RNMMM T0547 146 :AAEM 3gwqA 131 :VAEL T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLH 3gwqA 162 :VNKQLQVLLELGVP T0547 202 :SKFGLTS 3gwqA 177 :GRTGVRD T0547 209 :TELIEAVNLLKEN 3gwqA 185 :AQRNAVLEAITRY T0547 222 :KLL 3gwqA 199 :DTL T0547 226 :QFTMIHFHLGSQ 3gwqA 202 :KLAGVELYEGVL T0547 239 :TEIHPLKKALNEAGNIYTELRKMGA 3gwqA 214 :KEEHEVREFLQSAVAVTRELVEQER T0547 264 :KNLKAINLGGGLAVEY 3gwqA 240 :ARAPAVLSGAGSAWYD T0547 282 :FKNEKSR 3gwqA 256 :VVAEEFV T0547 291 :TL 3gwqA 263 :KA T0547 293 :REY 3gwqA 268 :GKV T0547 300 :VFIL 3gwqA 271 :EVVL T0547 306 :IAEQK 3gwqA 280 :LTHDV T0547 313 :LEPDIFIESG 3gwqA 285 :GIYRKAQTDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQEY 3gwqA 319 :QSIPEPDR T0547 349 :LILKKQNPKLIDE 3gwqA 327 :AIIGLGKRDSAFD T0547 363 :YDLYKSIKPSNAL 3gwqA 341 :GMPEPARHYRPGN T0547 377 :YLHD 3gwqA 358 :DIAA T0547 381 :SIDHLE 3gwqA 364 :GWEIFG T0547 388 :ILTLFDLGYVD 3gwqA 370 :LMDQHAYLRIP T0547 399 :LQDRSNAEILTHLITKKA 3gwqA 382 :GADLKVGDMIAFDISHPC T0547 417 :ILLLGDKQN 3gwqA 401 :TFDKWRQVL T0547 426 :PADLLAIQ 3gwqA 412 :DPAYRVTE T0547 523 :LGMK 3gwqA 421 :IETF Number of specific fragments extracted= 32 number of extra gaps= 1 total=21123 Will force an alignment to be made, even if fragment is small Number of alignments=960 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)G10 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 11 :NENFIIKNGKVCINY 3gwqA 10 :TIDPYSKGLGMVPGT T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3gwqA 26 :IQLTDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAE T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 69 :YGVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 3gwqA 95 :WGITLATAHQVRAAYHGGVSR T0547 129 :ITVNGFKDRE 3gwqA 116 :VLMANQLVGR T0547 140 :INIGF 3gwqA 126 :RNMMM T0547 146 :AAEM 3gwqA 131 :VAEL T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLH 3gwqA 162 :VNKQLQVLLELGVP T0547 188 :S 3gwqA 177 :G T0547 203 :KFGLTS 3gwqA 178 :RTGVRD T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHLGSQ 3gwqA 185 :AQRNAVLEAITRYPDTLKLAGVELYEGVL T0547 239 :TEIHPLKKALNEAGNIYTELRKMGA 3gwqA 214 :KEEHEVREFLQSAVAVTRELVEQER T0547 265 :NLKAINLGGGLAVEY 3gwqA 241 :RAPAVLSGAGSAWYD T0547 282 :FKNEKSR 3gwqA 280 :LTHDVGI T0547 300 :VFILKN 3gwqA 287 :YRKAQT T0547 308 :EQ 3gwqA 293 :DI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQEY 3gwqA 319 :QSIPEPDR T0547 349 :LILKKQNPKLIDE 3gwqA 327 :AIIGLGKRDSAFD T0547 362 :LY 3gwqA 341 :GM T0547 364 :DLYKSIKPSNALEYLHD 3gwqA 352 :GNEAPRDIAASEGWEIF T0547 388 :ILTLFDLGYVD 3gwqA 370 :LMDQHAYLRIP T0547 399 :LQDRSNAEILTHLITKKA 3gwqA 382 :GADLKVGDMIAFDISHPC T0547 417 :ILLLGDKQNPAD 3gwqA 401 :TFDKWRQVLVVD T0547 429 :LLAIQ 3gwqA 415 :YRVTE T0547 492 :SKDKP 3gwqA 420 :VIETF Number of specific fragments extracted= 27 number of extra gaps= 1 total=21150 Will force an alignment to be made, even if fragment is small Number of alignments=961 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)D7 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 Warning: unaligning (T0547)S555 because last residue in template chain is (3gwqA)F425 T0547 8 :IWGNENFIIKNGK 3gwqA 10 :TIDPYSKGLGMVP T0547 23 :INYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 23 :GTSIQLTDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 128 :PITVNGFKDRE 3gwqA 115 :RVLMANQLVGR T0547 140 :INIGF 3gwqA 126 :RNMMM T0547 146 :AAEM 3gwqA 131 :VAEL T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHS 3gwqA 162 :VNKQLQVLLELGVPG T0547 202 :SKFGLTS 3gwqA 177 :GRTGVRD T0547 209 :TELIEAVNLLKEN 3gwqA 185 :AQRNAVLEAITRY T0547 222 :KLL 3gwqA 199 :DTL T0547 226 :QFTMIHFHLGSQ 3gwqA 202 :KLAGVELYEGVL T0547 239 :TEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 214 :KEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAV 3gwqA 241 :RAPAVLSGAGSAW T0547 296 :ANDVVFILKNIAEQ 3gwqA 254 :YDVVAEEFVKASET T0547 313 :LEPDIFIESGRFV 3gwqA 268 :GKVEVVLRPGCYL T0547 328 :NHAVLIA 3gwqA 310 :PALQLWA T0547 337 :LELFSQ 3gwqA 319 :QSIPEP T0547 347 :NKLILKKQNPKLIDE 3gwqA 325 :DRAIIGLGKRDSAFD T0547 367 :KSIK 3gwqA 341 :GMPE T0547 377 :YLHD 3gwqA 359 :IAAS T0547 381 :SIDHLE 3gwqA 364 :GWEIFG T0547 388 :ILTLFDLGYVD 3gwqA 370 :LMDQHAYLRIP T0547 399 :LQDRSNAEILTHLITKKA 3gwqA 382 :GADLKVGDMIAFDISHPC T0547 417 :ILLLGD 3gwqA 401 :TFDKWR T0547 538 :ISINEKGYEVEGIIEAQ 3gwqA 408 :VLVVDPAYRVTEVIETF Number of specific fragments extracted= 27 number of extra gaps= 1 total=21177 Will force an alignment to be made, even if fragment is small Number of alignments=962 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)G5 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 Warning: unaligning (T0547)S555 because last residue in template chain is (3gwqA)F425 T0547 6 :IDIWGNENFIIKN 3gwqA 10 :TIDPYSKGLGMVP T0547 23 :INYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 23 :GTSIQLTDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 128 :PITVNGFKDRE 3gwqA 115 :RVLMANQLVGR T0547 140 :INIGF 3gwqA 126 :RNMMM T0547 146 :AAE 3gwqA 131 :VAE T0547 149 :MGHNITLTIEGLNELEAIIDIAKE 3gwqA 138 :PEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLH 3gwqA 162 :VNKQLQVLLELGVP T0547 202 :SKFGLTS 3gwqA 177 :GRTGVRD T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHLGSQ 3gwqA 185 :AQRNAVLEAITRYPDTLKLAGVELYEGVL T0547 239 :TEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 214 :KEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAVEY 3gwqA 241 :RAPAVLSGAGSAWYD T0547 283 :KNEKSRNYTLREYANDV 3gwqA 275 :RPGCYLTHDVGIYRKAQ T0547 308 :EQK 3gwqA 292 :TDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQEY 3gwqA 319 :QSIPEPDR T0547 349 :LILKKQNPKLIDE 3gwqA 327 :AIIGLGKRDSAFD T0547 362 :LY 3gwqA 341 :GM T0547 368 :SIKPSNALEYLHDSIDHLE 3gwqA 351 :PGNEAPRDIAASEGWEIFG T0547 388 :ILTLFDLGYVD 3gwqA 370 :LMDQHAYLRIP T0547 399 :LQDRSNAEILTHLITKKA 3gwqA 382 :GADLKVGDMIAFDISHPC T0547 417 :ILLLGD 3gwqA 401 :TFDKWR T0547 538 :ISINEKGYEVEGIIEAQ 3gwqA 408 :VLVVDPAYRVTEVIETF Number of specific fragments extracted= 24 number of extra gaps= 1 total=21201 Will force an alignment to be made, even if fragment is small Number of alignments=963 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)L337 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 T0547 29 :PAIIDIVKELRDD 3gwqA 21 :VPGTSIQLTDAAR T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFNK 3gwqA 42 :DVSLPAAVLYADRVEHNLKWMQAFVAE T0547 75 :YKGGFNAV 3gwqA 69 :YGVKLAPH T0547 85 :LKVNQYPGFVKNLVKLGK 3gwqA 77 :GKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3gwqA 95 :WGITLATAHQVRAAYHGGVSRVLMANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHSAGVGIW 3gwqA 162 :VNKQLQVLLELGVPGGRTGVR T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHLGSQI 3gwqA 183 :DAAQRNAVLEAITRYPDTLKLAGVELYEGVLK T0547 240 :EIHPLKKALNEAGNIYTELRKMGAK 3gwqA 215 :EEHEVREFLQSAVAVTRELVEQERF T0547 282 :FKNEKSRNYTLREYANDVVFILK 3gwqA 240 :ARAPAVLSGAGSAWYDVVAEEFV T0547 308 :EQKKDLEPDIFIESGRFVAANHAVLI 3gwqA 263 :KASETGKVEVVLRPGCYLTHDVGIYR T0547 334 :APV 3gwqA 292 :TDI T0547 344 :YAENKLILKKQNPKLIDE 3gwqA 331 :LGKRDSAFDAGMPEPARH T0547 362 :LYD 3gwqA 350 :RPG T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPAD 3gwqA 353 :NEAPRDIAASEGWEIFGLMDQHAYLRIP Number of specific fragments extracted= 14 number of extra gaps= 0 total=21215 Will force an alignment to be made, even if fragment is small Number of alignments=964 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 26 :EKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFN 3gwqA 26 :IQLTDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVA T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 68 :EYGVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 3gwqA 95 :WGITLATAHQVRAAYHGGVSR T0547 129 :ITVNGFKDRE 3gwqA 116 :VLMANQLVGR T0547 140 :INIGF 3gwqA 126 :RNMMM T0547 146 :AAE 3gwqA 131 :VAE T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLH 3gwqA 162 :VNKQLQVLLELGVP T0547 188 :S 3gwqA 177 :G T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHLGSQ 3gwqA 183 :DAAQRNAVLEAITRYPDTLKLAGVELYEGVL T0547 239 :TEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 214 :KEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAVEY 3gwqA 241 :RAPAVLSGAGSAWYD T0547 282 :FKNEK 3gwqA 280 :LTHDV T0547 301 :FILKNIAEQK 3gwqA 285 :GIYRKAQTDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQEY 3gwqA 319 :QSIPEPDR T0547 349 :LILKKQNPKLIDE 3gwqA 327 :AIIGLGKRDSAFD T0547 362 :L 3gwqA 341 :G T0547 367 :KSIKPSNALEYLHD 3gwqA 342 :MPEPARHYRPGNEA T0547 381 :SIDHLE 3gwqA 359 :IAASEG T0547 387 :SILTLFDLGYVD 3gwqA 369 :GLMDQHAYLRIP T0547 399 :LQDRSNAEILTHLITKKAI 3gwqA 382 :GADLKVGDMIAFDISHPCL T0547 418 :LLLGDKQN 3gwqA 402 :FDKWRQVL T0547 426 :PADLLAIQ 3gwqA 412 :DPAYRVTE Number of specific fragments extracted= 25 number of extra gaps= 1 total=21240 Will force an alignment to be made, even if fragment is small Number of alignments=965 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)R323 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 23 :INYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3gwqA 23 :GTSIQLTDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAE T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 69 :YGVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 3gwqA 95 :WGITLATAHQVRAAYHGGVSR T0547 129 :ITVNGFKDRE 3gwqA 116 :VLMANQLVGR T0547 140 :INIGF 3gwqA 126 :RNMMM T0547 146 :AAEM 3gwqA 131 :VAEL T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLH 3gwqA 162 :VNKQLQVLLELGVP T0547 202 :SKFGLTS 3gwqA 177 :GRTGVRD T0547 209 :TELIEAVNLLKEN 3gwqA 185 :AQRNAVLEAITRY T0547 222 :KLL 3gwqA 199 :DTL T0547 226 :QFTMIHFHLGSQ 3gwqA 202 :KLAGVELYEGVL T0547 239 :TEIHPLKKALNEAGNIYTELRKMGA 3gwqA 214 :KEEHEVREFLQSAVAVTRELVEQER T0547 264 :KNLKAINLGGGLAVEY 3gwqA 240 :ARAPAVLSGAGSAWYD T0547 282 :FKNEKSR 3gwqA 256 :VVAEEFV T0547 291 :TL 3gwqA 263 :KA T0547 293 :REY 3gwqA 268 :GKV T0547 300 :VFIL 3gwqA 271 :EVVL T0547 306 :IAEQK 3gwqA 280 :LTHDV T0547 313 :LEPDIFIESG 3gwqA 285 :GIYRKAQTDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQEY 3gwqA 319 :QSIPEPDR T0547 349 :LILKKQNPKLIDE 3gwqA 327 :AIIGLGKRDSAFD T0547 363 :YDLYKSIKPSNAL 3gwqA 341 :GMPEPARHYRPGN T0547 377 :YLHD 3gwqA 358 :DIAA T0547 381 :SIDHLE 3gwqA 364 :GWEIFG T0547 388 :ILTLFDLGYVD 3gwqA 370 :LMDQHAYLRIP T0547 399 :LQDRSNAEILTHLITKKA 3gwqA 382 :GADLKVGDMIAFDISHPC T0547 417 :ILLLGDKQN 3gwqA 401 :TFDKWRQVL T0547 426 :PADLLAIQ 3gwqA 412 :DPAYRVTE Number of specific fragments extracted= 30 number of extra gaps= 1 total=21270 Will force an alignment to be made, even if fragment is small Number of alignments=966 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 29 :PAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3gwqA 29 :TDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAE T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 69 :YGVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNEG 3gwqA 95 :WGITLATAHQVRAAYHGGVSR T0547 129 :ITVNGFKDRE 3gwqA 116 :VLMANQLVGR T0547 140 :INIGF 3gwqA 126 :RNMMM T0547 146 :AAEM 3gwqA 131 :VAEL T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLH 3gwqA 162 :VNKQLQVLLELGVP T0547 188 :S 3gwqA 177 :G T0547 203 :KFGLTS 3gwqA 178 :RTGVRD T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHLGSQ 3gwqA 185 :AQRNAVLEAITRYPDTLKLAGVELYEGVL T0547 239 :TEIHPLKKALNEAGNIYTELRKMGA 3gwqA 214 :KEEHEVREFLQSAVAVTRELVEQER T0547 265 :NLKAINLGGGLAVEY 3gwqA 241 :RAPAVLSGAGSAWYD T0547 282 :FKNEKSR 3gwqA 280 :LTHDVGI T0547 300 :VFILKN 3gwqA 287 :YRKAQT T0547 308 :EQ 3gwqA 293 :DI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQEY 3gwqA 319 :QSIPEPDR T0547 349 :LILKKQNPKLIDE 3gwqA 327 :AIIGLGKRDSAFD T0547 362 :LY 3gwqA 341 :GM T0547 364 :DLYKSIKPSNALEYLHD 3gwqA 352 :GNEAPRDIAASEGWEIF T0547 388 :ILTLFDLGYVD 3gwqA 370 :LMDQHAYLRIP T0547 399 :LQDRSNAEILTHLITKKA 3gwqA 382 :GADLKVGDMIAFDISHPC T0547 417 :ILLLGDKQNPADLL 3gwqA 401 :TFDKWRQVLVVDPA Number of specific fragments extracted= 24 number of extra gaps= 1 total=21294 Will force an alignment to be made, even if fragment is small Number of alignments=967 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 27 :KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 27 :QLTDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 128 :PITVNGFKDRE 3gwqA 115 :RVLMANQLVGR T0547 140 :INIGF 3gwqA 126 :RNMMM T0547 146 :AAEM 3gwqA 131 :VAEL T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHS 3gwqA 162 :VNKQLQVLLELGVPG T0547 202 :SKFGLTS 3gwqA 177 :GRTGVRD T0547 209 :TELIEAVNLLKEN 3gwqA 185 :AQRNAVLEAITRY T0547 222 :KLL 3gwqA 199 :DTL T0547 226 :QFTMIHFHLGSQ 3gwqA 202 :KLAGVELYEGVL T0547 239 :TEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 214 :KEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAV 3gwqA 241 :RAPAVLSGAGSAW T0547 296 :ANDVVFILKNIAEQ 3gwqA 254 :YDVVAEEFVKASET T0547 313 :LEPDIFIESGRFV 3gwqA 268 :GKVEVVLRPGCYL T0547 328 :NHAVLIA 3gwqA 310 :PALQLWA T0547 337 :LELFSQ 3gwqA 319 :QSIPEP T0547 347 :NKLILKKQNPKLIDE 3gwqA 325 :DRAIIGLGKRDSAFD T0547 367 :KSIK 3gwqA 341 :GMPE T0547 377 :YLHD 3gwqA 359 :IAAS T0547 381 :SIDHLE 3gwqA 364 :GWEIFG T0547 388 :ILTLFDLGYVD 3gwqA 370 :LMDQHAYLRIP T0547 399 :LQDRSNAEILTHLITKKA 3gwqA 382 :GADLKVGDMIAFDISHPC T0547 417 :ILLLGD 3gwqA 401 :TFDKWR T0547 538 :ISINEKGYEVEGIIEAQ 3gwqA 408 :VLVVDPAYRVTEVIETF Number of specific fragments extracted= 26 number of extra gaps= 1 total=21320 Will force an alignment to be made, even if fragment is small Number of alignments=968 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 25 :YEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 25 :SIQLTDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 128 :PITVNGFKDRE 3gwqA 115 :RVLMANQLVGR T0547 140 :INIGF 3gwqA 126 :RNMMM T0547 146 :AAE 3gwqA 131 :VAE T0547 149 :MGHNITLTIEGLNELEAIIDIAKE 3gwqA 138 :PEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLH 3gwqA 162 :VNKQLQVLLELGVP T0547 202 :SKFGLTS 3gwqA 177 :GRTGVRD T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHLGSQ 3gwqA 185 :AQRNAVLEAITRYPDTLKLAGVELYEGVL T0547 239 :TEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 214 :KEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAVEY 3gwqA 241 :RAPAVLSGAGSAWYD T0547 283 :KNEKSRNYTLREYANDV 3gwqA 275 :RPGCYLTHDVGIYRKAQ T0547 308 :EQK 3gwqA 292 :TDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQEY 3gwqA 319 :QSIPEPDR T0547 349 :LILKKQNPKLIDE 3gwqA 327 :AIIGLGKRDSAFD T0547 362 :LY 3gwqA 341 :GM T0547 368 :SIKPSNALEYLHDSIDHLE 3gwqA 351 :PGNEAPRDIAASEGWEIFG T0547 388 :ILTLFDLGYVD 3gwqA 370 :LMDQHAYLRIP T0547 399 :LQDRSNAEILTHLITKKA 3gwqA 382 :GADLKVGDMIAFDISHPC T0547 417 :ILLLGD 3gwqA 401 :TFDKWR T0547 538 :ISINEKGYEVEGIIEA 3gwqA 408 :VLVVDPAYRVTEVIET Number of specific fragments extracted= 23 number of extra gaps= 1 total=21343 Will force an alignment to be made, even if fragment is small Number of alignments=969 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)W9 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)F340 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)P451 because last residue in template chain is (3gwqA)F425 T0547 10 :GNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 10 :TIDPYSKGLGMVPGTSIQLTDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 77 :G 3gwqA 70 :G T0547 78 :GFNAV 3gwqA 72 :KLAPH T0547 85 :LKVNQYPGFVKNLVKLGK 3gwqA 77 :GKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 127 :APITVNGF 3gwqA 115 :RVLMANQL T0547 135 :KDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3gwqA 124 :GRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRV 3gwqA 162 :VNKQLQVLLEL T0547 187 :HSAGV 3gwqA 173 :GVPGG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKENK 3gwqA 183 :DAAQRNAVLEAITRYP T0547 223 :LLEQFT 3gwqA 200 :TLKLAG T0547 230 :IHFHLGS 3gwqA 206 :VELYEGV T0547 238 :ITEIHPLKKALNEAGNIYTELR 3gwqA 213 :LKEEHEVREFLQSAVAVTRELV T0547 260 :KMGAKNLKAINLGGGL 3gwqA 236 :QERFARAPAVLSGAGS T0547 294 :EYANDVVFILKNIAEQ 3gwqA 252 :AWYDVVAEEFVKASET T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLEL 3gwqA 268 :GKVEVVLRPGCYLTHDVGIYRKAQTDI T0547 344 :YAE 3gwqA 323 :EPD T0547 348 :KLILKK 3gwqA 326 :RAIIGL T0547 354 :QNPKLIDEL 3gwqA 333 :KRDSAFDAG T0547 363 :YDLYKSIKPSNALE 3gwqA 343 :PEPARHYRPGNEAP T0547 377 :YLHDSIDH 3gwqA 363 :EGWEIFGL T0547 389 :LTLFDLGYVDLQ 3gwqA 371 :MDQHAYLRIPAG T0547 401 :DRSNAEILTHLITKKA 3gwqA 384 :DLKVGDMIAFDISHPC T0547 425 :NPADLLAIQDEVQ 3gwqA 400 :LTFDKWRQVLVVD T0547 439 :RYLVNFSLFQSM 3gwqA 413 :PAYRVTEVIETF Number of specific fragments extracted= 26 number of extra gaps= 0 total=21369 Will force an alignment to be made, even if fragment is small Number of alignments=970 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)Y4 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)V300 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 Warning: unaligning (T0547)Q554 because last residue in template chain is (3gwqA)F425 T0547 5 :GIDIWGNENFIIKN 3gwqA 10 :TIDPYSKGLGMVPG T0547 19 :GK 3gwqA 25 :SI T0547 21 :VCIN 3gwqA 34 :LEWN T0547 39 :RDDG 3gwqA 38 :LLNE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 3gwqA 43 :VSLPAAVLYADRVEHNLKWMQAFVA T0547 77 :G 3gwqA 68 :E T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 128 :PITVNGF 3gwqA 115 :RVLMANQ T0547 135 :KDRELINIGFIAAE 3gwqA 123 :VGRRNMMMVAELLS T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRV 3gwqA 162 :VNKQLQVLLEL T0547 187 :HSAGV 3gwqA 173 :GVPGG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKENKL 3gwqA 183 :DAAQRNAVLEAITRYPD T0547 224 :LEQFT 3gwqA 201 :LKLAG T0547 230 :IHFHLG 3gwqA 206 :VELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAV 3gwqA 242 :APAVLSGAGSAWY T0547 278 :EYSQFKNEK 3gwqA 278 :CYLTHDVGI T0547 292 :LREYANDV 3gwqA 287 :YRKAQTDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 348 :KLILKK 3gwqA 326 :RAIIGL T0547 354 :QNPKLIDELYDLYKSI 3gwqA 333 :KRDSAFDAGMPEPARH T0547 370 :KPSNALE 3gwqA 355 :APRDIAA T0547 377 :YLHDSID 3gwqA 363 :EGWEIFG T0547 385 :LESILTLFDLG 3gwqA 370 :LMDQHAYLRIP T0547 398 :DLQDRSNAEILTH 3gwqA 381 :AGADLKVGDMIAF T0547 412 :ITKKAIL 3gwqA 394 :DISHPCL T0547 423 :KQNPADLL 3gwqA 401 :TFDKWRQV T0547 538 :ISINEKGYEVEGIIEA 3gwqA 409 :LVVDPAYRVTEVIETF Number of specific fragments extracted= 32 number of extra gaps= 1 total=21401 Will force an alignment to be made, even if fragment is small Number of alignments=971 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)Y4 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 5 :GIDIWGN 3gwqA 10 :TIDPYSK T0547 12 :ENFIIKN 3gwqA 19 :GMVPGTS T0547 19 :GKVCI 3gwqA 27 :QLTDA T0547 27 :KKPAIIDIVKE 3gwqA 32 :ARLEWNLLNED T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 3gwqA 43 :VSLPAAVLYADRVEHNLKWMQAFVAE T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 69 :YGVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNN 3gwqA 95 :WGITLATAHQVRAAYHGGV T0547 127 :APITVNGF 3gwqA 114 :SRVLMANQ T0547 135 :KDRELINIGFIAAEM 3gwqA 123 :VGRRNMMMVAELLSD T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRV 3gwqA 162 :VNKQLQVLLEL T0547 187 :HSAGV 3gwqA 173 :GVPGG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKEN 3gwqA 183 :DAAQRNAVLEAITRY T0547 222 :KLLEQFT 3gwqA 199 :DTLKLAG T0547 230 :IHFHLG 3gwqA 206 :VELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVE T0547 261 :MGA 3gwqA 239 :FAR T0547 265 :NLKAINLGGGLAVEYSQFKNEK 3gwqA 242 :APAVLSGAGSAWYDVVAEEFVK T0547 287 :SRNYTLREY 3gwqA 265 :SETGKVEVV T0547 296 :ANDV 3gwqA 276 :PGCY T0547 306 :IA 3gwqA 280 :LT T0547 313 :LEPDIFIESGRFV 3gwqA 282 :HDVGIYRKAQTDI T0547 328 :NHAVLIA 3gwqA 310 :PALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 348 :KLILKK 3gwqA 326 :RAIIGL T0547 354 :QNPKLIDELYDLYKSI 3gwqA 333 :KRDSAFDAGMPEPARH T0547 370 :KPSNALE 3gwqA 355 :APRDIAA T0547 377 :YLHDSID 3gwqA 363 :EGWEIFG T0547 385 :LESILTLFDLG 3gwqA 370 :LMDQHAYLRIP T0547 398 :DLQDRSNAEILTH 3gwqA 381 :AGADLKVGDMIAF T0547 412 :ITKKAILLL 3gwqA 394 :DISHPCLTF T0547 425 :NPADL 3gwqA 403 :DKWRQ T0547 433 :QDEVQE 3gwqA 408 :VLVVDP T0547 544 :GY 3gwqA 414 :AY T0547 555 :SILDTLED 3gwqA 416 :RVTEVIET Number of specific fragments extracted= 36 number of extra gaps= 1 total=21437 Will force an alignment to be made, even if fragment is small Number of alignments=972 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 Warning: unaligning (T0547)L497 because last residue in template chain is (3gwqA)F425 T0547 22 :CINYEK 3gwqA 10 :TIDPYS T0547 29 :PAIIDI 3gwqA 26 :IQLTDA T0547 36 :KELR 3gwqA 32 :ARLE T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNFNK 3gwqA 40 :NEDVSLPAAVLYADRVEHNLKWMQAFVAE T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 69 :YGVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 128 :PITVNGF 3gwqA 115 :RVLMANQ T0547 135 :KDRELINIGFIAAE 3gwqA 123 :VGRRNMMMVAELLS T0547 149 :MGHNITLTIEGLNELEAIIDIAKE 3gwqA 138 :PEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRV 3gwqA 162 :VNKQLQVLLEL T0547 187 :HSAGV 3gwqA 173 :GVPGG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKENKL 3gwqA 183 :DAAQRNAVLEAITRYPD T0547 224 :LEQFT 3gwqA 201 :LKLAG T0547 230 :IHFHLG 3gwqA 206 :VELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAV 3gwqA 242 :APAVLSGAGSAWY T0547 278 :EY 3gwqA 278 :CY T0547 282 :FKNEK 3gwqA 282 :HDVGI T0547 302 :ILKNIAEQ 3gwqA 287 :YRKAQTDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 348 :KLILKK 3gwqA 326 :RAIIGL T0547 354 :QNPKLIDELYDLYKSIKPSNALE 3gwqA 333 :KRDSAFDAGMPEPARHYRPGNEA T0547 377 :YLHDSID 3gwqA 363 :EGWEIFG T0547 385 :LESILTLFDLG 3gwqA 370 :LMDQHAYLRIP T0547 398 :DLQDRSNAEILT 3gwqA 381 :AGADLKVGDMIA T0547 411 :LITKKAIL 3gwqA 393 :FDISHPCL T0547 423 :KQNPADLL 3gwqA 401 :TFDKWRQV T0547 481 :ITCDSDGEISYSKDKP 3gwqA 409 :LVVDPAYRVTEVIETF Number of specific fragments extracted= 30 number of extra gaps= 1 total=21467 Will force an alignment to be made, even if fragment is small Number of alignments=973 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)Y4 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 Warning: unaligning (T0547)S555 because last residue in template chain is (3gwqA)F425 T0547 5 :GIDIWGN 3gwqA 10 :TIDPYSK T0547 38 :LRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 38 :LLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNN 3gwqA 95 :WGITLATAHQVRAAYHGGV T0547 127 :APITVNGF 3gwqA 114 :SRVLMANQ T0547 135 :KDRELINIGFIAAE 3gwqA 123 :VGRRNMMMVAELLS T0547 149 :MGHNITLTIEGLNELEAIIDIAKE 3gwqA 138 :PEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRV 3gwqA 162 :VNKQLQVLLEL T0547 187 :HSAGV 3gwqA 173 :GVPGG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKEN 3gwqA 183 :DAAQRNAVLEAITRY T0547 222 :KLLEQFT 3gwqA 199 :DTLKLAG T0547 230 :IHFHLG 3gwqA 206 :VELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAV 3gwqA 242 :APAVLSGAGSAWY T0547 293 :REYAND 3gwqA 255 :DVVAEE T0547 303 :LKNIAEQ 3gwqA 261 :FVKASET T0547 313 :LEPDIFIESGRFVAA 3gwqA 268 :GKVEVVLRPGCYLTH T0547 328 :NHAVLIA 3gwqA 310 :PALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 348 :KLILKK 3gwqA 326 :RAIIGL T0547 354 :QNPKLIDE 3gwqA 333 :KRDSAFDA T0547 367 :KSI 3gwqA 341 :GMP T0547 370 :KPSNALE 3gwqA 355 :APRDIAA T0547 377 :YLHDSIDHLES 3gwqA 363 :EGWEIFGLMDQ T0547 389 :LTLFDLG 3gwqA 374 :HAYLRIP T0547 398 :DLQDRSNAEILTHL 3gwqA 381 :AGADLKVGDMIAFD T0547 450 :MPDFWGLEQNFPI 3gwqA 395 :ISHPCLTFDKWRQ T0547 512 :GFFL 3gwqA 408 :VLVV T0547 542 :EKGYEVEGIIEAQ 3gwqA 412 :DPAYRVTEVIETF Number of specific fragments extracted= 30 number of extra gaps= 1 total=21497 Will force an alignment to be made, even if fragment is small Number of alignments=974 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)Y4 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 5 :GIDIWG 3gwqA 10 :TIDPYS T0547 29 :PA 3gwqA 34 :LE T0547 38 :LRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 38 :LLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNN 3gwqA 95 :WGITLATAHQVRAAYHGGV T0547 127 :APITVNGF 3gwqA 114 :SRVLMANQ T0547 135 :KDRELINIGFIAAE 3gwqA 123 :VGRRNMMMVAELLS T0547 149 :MGHNITLTIEGLNELEAIIDIAKE 3gwqA 138 :PEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLH 3gwqA 162 :VNKQLQVLLELGVP T0547 190 :GV 3gwqA 176 :GG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKENKL 3gwqA 183 :DAAQRNAVLEAITRYPD T0547 224 :LEQFT 3gwqA 201 :LKLAG T0547 230 :IHFHLG 3gwqA 206 :VELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAV 3gwqA 242 :APAVLSGAGSAWY T0547 278 :EYSQ 3gwqA 279 :YLTH T0547 291 :TLREYANDVVFI 3gwqA 283 :DVGIYRKAQTDI T0547 314 :EP 3gwqA 307 :GL T0547 327 :ANHAVLIA 3gwqA 309 :LPALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 348 :KLILKK 3gwqA 326 :RAIIGL T0547 354 :QNPKLIDELYD 3gwqA 333 :KRDSAFDAGMP T0547 365 :LYKSIKPSNALE 3gwqA 350 :RPGNEAPRDIAA T0547 377 :YLHDSIDH 3gwqA 363 :EGWEIFGL T0547 386 :ESILTLFDLG 3gwqA 371 :MDQHAYLRIP T0547 398 :DLQDRSNAEILTH 3gwqA 381 :AGADLKVGDMIAF T0547 412 :ITKKAIL 3gwqA 394 :DISHPCL T0547 423 :KQNPADL 3gwqA 401 :TFDKWRQ T0547 476 :A 3gwqA 408 :V T0547 538 :ISIN 3gwqA 409 :LVVD T0547 543 :KGYEVEGIIEAQ 3gwqA 413 :PAYRVTEVIETF Number of specific fragments extracted= 32 number of extra gaps= 1 total=21529 Will force an alignment to be made, even if fragment is small Number of alignments=975 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)F340 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 T0547 25 :YEKKPAIIDIVK 3gwqA 22 :PGTSIQLTDAAR T0547 37 :ELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 37 :NLLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 77 :G 3gwqA 70 :G T0547 78 :GFNAV 3gwqA 72 :KLAPH T0547 85 :LKVNQYPGFVKNLVKLGK 3gwqA 77 :GKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 127 :APITVNGF 3gwqA 115 :RVLMANQL T0547 135 :KDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3gwqA 124 :GRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRV 3gwqA 162 :VNKQLQVLLEL T0547 187 :HSAGV 3gwqA 173 :GVPGG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKENK 3gwqA 183 :DAAQRNAVLEAITRYP T0547 223 :LLEQFT 3gwqA 200 :TLKLAG T0547 230 :IHFHLGS 3gwqA 206 :VELYEGV T0547 238 :ITEIHPLKKALNEAGNIYTELR 3gwqA 213 :LKEEHEVREFLQSAVAVTRELV T0547 260 :KMGAKNLKAINLGGGL 3gwqA 236 :QERFARAPAVLSGAGS T0547 294 :EYANDVVFILKNIAEQ 3gwqA 252 :AWYDVVAEEFVKASET T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLEL 3gwqA 268 :GKVEVVLRPGCYLTHDVGIYRKAQTDI T0547 344 :YAE 3gwqA 323 :EPD T0547 348 :KLILKK 3gwqA 326 :RAIIGL T0547 354 :QNPKLIDEL 3gwqA 333 :KRDSAFDAG T0547 363 :YDLYKSIKPSNALE 3gwqA 343 :PEPARHYRPGNEAP T0547 377 :YLHDSIDH 3gwqA 363 :EGWEIFGL T0547 389 :LTLFDLGYVDLQ 3gwqA 371 :MDQHAYLRIPAG T0547 401 :DRSNAEILTHLITKKA 3gwqA 384 :DLKVGDMIAFDISHPC Number of specific fragments extracted= 25 number of extra gaps= 0 total=21554 Will force an alignment to be made, even if fragment is small Number of alignments=976 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)V300 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 39 :RDDG 3gwqA 38 :LLNE T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 3gwqA 43 :VSLPAAVLYADRVEHNLKWMQAFVA T0547 77 :G 3gwqA 68 :E T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 128 :PITVNGF 3gwqA 115 :RVLMANQ T0547 135 :KDRELINIGFIAAE 3gwqA 123 :VGRRNMMMVAELLS T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRV 3gwqA 162 :VNKQLQVLLEL T0547 187 :HSAGV 3gwqA 173 :GVPGG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKENKL 3gwqA 183 :DAAQRNAVLEAITRYPD T0547 224 :LEQFT 3gwqA 201 :LKLAG T0547 230 :IHFHLG 3gwqA 206 :VELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAV 3gwqA 242 :APAVLSGAGSAWY T0547 278 :EYSQFKNEK 3gwqA 278 :CYLTHDVGI T0547 292 :LREYANDV 3gwqA 287 :YRKAQTDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 348 :KLILKK 3gwqA 326 :RAIIGL T0547 354 :QNPKLIDELYDLYKSI 3gwqA 333 :KRDSAFDAGMPEPARH T0547 370 :KPSNALE 3gwqA 355 :APRDIAA T0547 377 :YLHDSID 3gwqA 363 :EGWEIFG T0547 385 :LESILTLFDLG 3gwqA 370 :LMDQHAYLRIP T0547 398 :DLQDRSNAEILTH 3gwqA 381 :AGADLKVGDMIAF T0547 412 :ITKKAIL 3gwqA 394 :DISHPCL T0547 423 :KQNPADLL 3gwqA 401 :TFDKWRQV T0547 538 :ISINEKGYEVEGI 3gwqA 409 :LVVDPAYRVTEVI Number of specific fragments extracted= 29 number of extra gaps= 1 total=21583 Will force an alignment to be made, even if fragment is small Number of alignments=977 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 13 :NFIIKN 3gwqA 20 :MVPGTS T0547 19 :GKVCI 3gwqA 27 :QLTDA T0547 27 :KKPAIIDIVKE 3gwqA 32 :ARLEWNLLNED T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 3gwqA 43 :VSLPAAVLYADRVEHNLKWMQAFVAE T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 69 :YGVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNN 3gwqA 95 :WGITLATAHQVRAAYHGGV T0547 127 :APITVNGF 3gwqA 114 :SRVLMANQ T0547 135 :KDRELINIGFIAAEM 3gwqA 123 :VGRRNMMMVAELLSD T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRV 3gwqA 162 :VNKQLQVLLEL T0547 187 :HSAGV 3gwqA 173 :GVPGG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKEN 3gwqA 183 :DAAQRNAVLEAITRY T0547 222 :KLLEQFT 3gwqA 199 :DTLKLAG T0547 230 :IHFHLG 3gwqA 206 :VELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVE T0547 261 :MGA 3gwqA 239 :FAR T0547 265 :NLKAINLGGGLAVEYSQFKNEK 3gwqA 242 :APAVLSGAGSAWYDVVAEEFVK T0547 287 :SRNYTLREY 3gwqA 265 :SETGKVEVV T0547 296 :ANDV 3gwqA 276 :PGCY T0547 306 :IA 3gwqA 280 :LT T0547 313 :LEPDIFIESGRFV 3gwqA 282 :HDVGIYRKAQTDI T0547 328 :NHAVLIA 3gwqA 310 :PALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 348 :KLILKK 3gwqA 326 :RAIIGL T0547 354 :QNPKLIDELYDLYKSI 3gwqA 333 :KRDSAFDAGMPEPARH T0547 370 :KPSNALE 3gwqA 355 :APRDIAA T0547 377 :YLHDSID 3gwqA 363 :EGWEIFG T0547 385 :LESILTLFDLG 3gwqA 370 :LMDQHAYLRIP T0547 398 :DLQDRSNAEILTH 3gwqA 381 :AGADLKVGDMIAF T0547 412 :ITKKAILLL 3gwqA 394 :DISHPCLTF T0547 425 :NPADL 3gwqA 403 :DKWRQ T0547 433 :QDEVQER 3gwqA 408 :VLVVDPA T0547 545 :Y 3gwqA 415 :Y T0547 555 :SILDT 3gwqA 416 :RVTEV Number of specific fragments extracted= 35 number of extra gaps= 1 total=21618 Will force an alignment to be made, even if fragment is small Number of alignments=978 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFNK 3gwqA 41 :EDVSLPAAVLYADRVEHNLKWMQAFVAE T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 69 :YGVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 128 :PITVNGF 3gwqA 115 :RVLMANQ T0547 135 :KDRELINIGFIAAE 3gwqA 123 :VGRRNMMMVAELLS T0547 149 :MGHNITLTIEGLNELEAIIDIAKE 3gwqA 138 :PEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRV 3gwqA 162 :VNKQLQVLLEL T0547 187 :HSAGV 3gwqA 173 :GVPGG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKENKL 3gwqA 183 :DAAQRNAVLEAITRYPD T0547 224 :LEQFT 3gwqA 201 :LKLAG T0547 230 :IHFHLG 3gwqA 206 :VELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAV 3gwqA 242 :APAVLSGAGSAWY T0547 278 :EY 3gwqA 278 :CY T0547 282 :FKNEK 3gwqA 282 :HDVGI T0547 302 :ILKNIAEQ 3gwqA 287 :YRKAQTDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 348 :KLILKK 3gwqA 326 :RAIIGL T0547 354 :QNPKLIDELYDLYKSIKPSNALE 3gwqA 333 :KRDSAFDAGMPEPARHYRPGNEA T0547 377 :YLHDSID 3gwqA 363 :EGWEIFG T0547 385 :LESILTLFDLG 3gwqA 370 :LMDQHAYLRIP T0547 398 :DLQDRSNAEILT 3gwqA 381 :AGADLKVGDMIA T0547 411 :LITKKAIL 3gwqA 393 :FDISHPCL T0547 423 :KQNPADLLA 3gwqA 401 :TFDKWRQVL T0547 482 :TCDSDGEISYSK 3gwqA 410 :VVDPAYRVTEVI Number of specific fragments extracted= 27 number of extra gaps= 1 total=21645 Will force an alignment to be made, even if fragment is small Number of alignments=979 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 5 :GIDI 3gwqA 35 :EWNL T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 39 :LNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNN 3gwqA 95 :WGITLATAHQVRAAYHGGV T0547 127 :APITVNGF 3gwqA 114 :SRVLMANQ T0547 135 :KDRELINIGFIAAE 3gwqA 123 :VGRRNMMMVAELLS T0547 149 :MGHNITLTIEGLNELEAIIDIAKE 3gwqA 138 :PEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRV 3gwqA 162 :VNKQLQVLLEL T0547 187 :HSAGV 3gwqA 173 :GVPGG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKEN 3gwqA 183 :DAAQRNAVLEAITRY T0547 222 :KLLEQFT 3gwqA 199 :DTLKLAG T0547 230 :IHFHLG 3gwqA 206 :VELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAV 3gwqA 242 :APAVLSGAGSAWY T0547 293 :REYAND 3gwqA 255 :DVVAEE T0547 303 :LKNIAEQ 3gwqA 261 :FVKASET T0547 313 :LEPDIFIESGRFVAA 3gwqA 268 :GKVEVVLRPGCYLTH T0547 328 :NHAVLIA 3gwqA 310 :PALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 348 :KLILKK 3gwqA 326 :RAIIGL T0547 354 :QNPKLIDE 3gwqA 333 :KRDSAFDA T0547 367 :KSI 3gwqA 341 :GMP T0547 370 :KPSNALE 3gwqA 355 :APRDIAA T0547 377 :YLHDSIDHLES 3gwqA 363 :EGWEIFGLMDQ T0547 389 :LTLFDLG 3gwqA 374 :HAYLRIP T0547 398 :DLQDRSNAEILTHL 3gwqA 381 :AGADLKVGDMIAFD T0547 450 :MPDFWGLEQNFPI 3gwqA 395 :ISHPCLTFDKWRQ T0547 512 :GFFL 3gwqA 408 :VLVV T0547 542 :EKGYEVEGIIEA 3gwqA 412 :DPAYRVTEVIET Number of specific fragments extracted= 30 number of extra gaps= 1 total=21675 Will force an alignment to be made, even if fragment is small Number of alignments=980 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)L313 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 39 :LNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNN 3gwqA 95 :WGITLATAHQVRAAYHGGV T0547 127 :APITVNGF 3gwqA 114 :SRVLMANQ T0547 135 :KDRELINIGFIAAE 3gwqA 123 :VGRRNMMMVAELLS T0547 149 :MGHNITLTIEGLNELEAIIDIAKE 3gwqA 138 :PEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLH 3gwqA 162 :VNKQLQVLLELGVP T0547 190 :GV 3gwqA 176 :GG T0547 203 :KFGL 3gwqA 178 :RTGV T0547 207 :TSTELIEAVNLLKENKL 3gwqA 183 :DAAQRNAVLEAITRYPD T0547 224 :LEQFT 3gwqA 201 :LKLAG T0547 230 :IHFHLG 3gwqA 206 :VELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERF T0547 265 :NLKAINLGGGLAV 3gwqA 242 :APAVLSGAGSAWY T0547 278 :EYSQ 3gwqA 279 :YLTH T0547 291 :TLREYANDVVFI 3gwqA 283 :DVGIYRKAQTDI T0547 314 :EP 3gwqA 307 :GL T0547 327 :ANHAVLIA 3gwqA 309 :LPALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 348 :KLILKK 3gwqA 326 :RAIIGL T0547 354 :QNPKLIDELYD 3gwqA 333 :KRDSAFDAGMP T0547 365 :LYKSIKPSNALE 3gwqA 350 :RPGNEAPRDIAA T0547 377 :YLHDSIDH 3gwqA 363 :EGWEIFGL T0547 386 :ESILTLFDLG 3gwqA 371 :MDQHAYLRIP T0547 398 :DLQDRSNAEILTH 3gwqA 381 :AGADLKVGDMIAF T0547 412 :ITKKAIL 3gwqA 394 :DISHPCL T0547 423 :KQNPADL 3gwqA 401 :TFDKWRQ T0547 537 :IISIN 3gwqA 408 :VLVVD T0547 543 :KGYEVEGIIE 3gwqA 413 :PAYRVTEVIE Number of specific fragments extracted= 29 number of extra gaps= 1 total=21704 Will force an alignment to be made, even if fragment is small Number of alignments=981 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)E12 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)P356 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)K367 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)S368 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 13 :NFIIKNGKVCINYEKK 3gwqA 10 :TIDPYSKGLGMVPGTS T0547 29 :PAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 29 :TDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3gwqA 95 :WGITLATAHQVRAAYHGGVSRVLMANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHSAGVGI 3gwqA 162 :VNKQLQVLLELGVPGGRTGV T0547 206 :LTSTELIEAVNLLKENKLLEQFTMIHFHLGS 3gwqA 182 :RDAAQRNAVLEAITRYPDTLKLAGVELYEGV T0547 238 :ITEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 213 :LKEEHEVREFLQSAVAVTRELVEQERF T0547 282 :FKNEKSRNYTLREYANDV 3gwqA 240 :ARAPAVLSGAGSAWYDVV T0547 303 :LKNIAEQKKDLEPDIFIESGRFVAANHAVLI 3gwqA 258 :AEEFVKASETGKVEVVLRPGCYLTHDVGIYR T0547 340 :FSQEY 3gwqA 289 :KAQTD T0547 357 :KLIDELYDLY 3gwqA 307 :GLLPALQLWA T0547 369 :IKPS 3gwqA 319 :QSIP T0547 377 :YLHDSIDHLESILTLFDLGYVD 3gwqA 323 :EPDRAIIGLGKRDSAFDAGMPE T0547 399 :LQDR 3gwqA 348 :HYRP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 3gwqA 354 :EAPRDIAASEGWEIFGLMDQHAYLRIPAGADLKV T0547 451 :PDFWGLEQNFPIMPLDRLDEEPTRS 3gwqA 388 :GDMIAFDISHPCLTFDKWRQVLVVD T0547 543 :KGY 3gwqA 413 :PAY T0547 555 :SILDTLEDL 3gwqA 416 :RVTEVIETF Number of specific fragments extracted= 18 number of extra gaps= 1 total=21722 Will force an alignment to be made, even if fragment is small Number of alignments=982 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)C22 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 23 :IN 3gwqA 10 :TI T0547 38 :LRDD 3gwqA 30 :DAAR T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFN 3gwqA 42 :DVSLPAAVLYADRVEHNLKWMQAFVA T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 68 :EYGVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 127 :APITVNGFKDRELINIGFIAAEM 3gwqA 115 :RVLMANQLVGRRNMMMVAELLSD T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHSAGVGI 3gwqA 162 :VNKQLQVLLELGVPGGRTGV T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHLG 3gwqA 183 :DAAQRNAVLEAITRYPDTLKLAGVELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERF T0547 274 :GLAVEYSQFKNEKSRNYTLREYANDV 3gwqA 240 :ARAPAVLSGAGSAWYDVVAEEFVKAS T0547 300 :VFILKNIAEQ 3gwqA 285 :GIYRKAQTDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 347 :NKLILKK 3gwqA 326 :RAIIGLG T0547 387 :SILTLFDLGYVDLQDR 3gwqA 333 :KRDSAFDAGMPEPARH T0547 421 :GDKQNPAD 3gwqA 351 :PGNEAPRD T0547 462 :IMPLDRLD 3gwqA 359 :IAASEGWE T0547 489 :ISYSKDKPL 3gwqA 367 :IFGLMDQHA T0547 498 :FLHDV 3gwqA 394 :DISHP T0547 525 :MKHNLF 3gwqA 403 :DKWRQV T0547 538 :ISINEKGYE 3gwqA 409 :LVVDPAYRV T0547 604 :GYLKSIGV 3gwqA 418 :TEVIETFF Number of specific fragments extracted= 23 number of extra gaps= 1 total=21745 Will force an alignment to be made, even if fragment is small Number of alignments=983 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)F14 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)P356 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)K367 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)G604 because last residue in template chain is (3gwqA)F425 T0547 15 :IIKNGKVCINYEKK 3gwqA 10 :TIDPYSKGLGMVPG T0547 29 :PAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 29 :TDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETG T0547 105 :NYGLEAGSKAELLLAMAYNNE 3gwqA 94 :AWGITLATAHQVRAAYHGGVS T0547 127 :APITVNGFKDRELINIGF 3gwqA 115 :RVLMANQLVGRRNMMMVA T0547 145 :IAAEMGHNITLTIEGLNELEAIIDIAKE 3gwqA 134 :LLSDPEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHS 3gwqA 162 :VNKQLQVLLELGVPG T0547 190 :GVG 3gwqA 177 :GRT T0547 205 :GLTS 3gwqA 180 :GVRD T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHLG 3gwqA 185 :AQRNAVLEAITRYPDTLKLAGVELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAKNLKA 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERFARAP T0547 272 :GGGLAV 3gwqA 248 :GAGSAW T0547 292 :LREYANDV 3gwqA 254 :YDVVAEEF T0547 309 :QKKDLEPDIFIE 3gwqA 262 :VKASETGKVEVV T0547 321 :SGRFVAANHAVLIA 3gwqA 276 :PGCYLTHDVGIYRK T0547 351 :LKKQN 3gwqA 290 :AQTDI T0547 368 :SIKPS 3gwqA 307 :GLLPA T0547 373 :NALEYLHDSIDH 3gwqA 361 :ASEGWEIFGLMD T0547 393 :DLGYVDLQDR 3gwqA 373 :QHAYLRIPAG T0547 403 :SNAEILTHLI 3gwqA 385 :LKVGDMIAFD T0547 426 :PADLLAIQ 3gwqA 395 :ISHPCLTF T0547 525 :MKHNLF 3gwqA 403 :DKWRQV T0547 538 :I 3gwqA 409 :L T0547 540 :INEKGYEVEGIIEA 3gwqA 410 :VVDPAYRVTEVIET T0547 603 :N 3gwqA 424 :F Number of specific fragments extracted= 25 number of extra gaps= 0 total=21770 Will force an alignment to be made, even if fragment is small Number of alignments=984 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)C22 because first residue in template chain is (3gwqA)A9 Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 23 :INYEKK 3gwqA 10 :TIDPYS T0547 29 :PAIIDIVKELRDD 3gwqA 21 :VPGTSIQLTDAAR T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFN 3gwqA 42 :DVSLPAAVLYADRVEHNLKWMQAFVA T0547 72 :EFG 3gwqA 68 :EYG T0547 79 :FNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 71 :VKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 127 :APITVNGFKDRELINIGFIAAEM 3gwqA 115 :RVLMANQLVGRRNMMMVAELLSD T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHSAGVGI 3gwqA 162 :VNKQLQVLLELGVPGGRTGV T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHLG 3gwqA 185 :AQRNAVLEAITRYPDTLKLAGVELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQ T0547 263 :AKN 3gwqA 237 :ERF T0547 274 :GLAVEYSQF 3gwqA 240 :ARAPAVLSG T0547 285 :EKSRNY 3gwqA 281 :THDVGI T0547 302 :ILKNIAEQ 3gwqA 287 :YRKAQTDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQ 3gwqA 319 :QSIPEP T0547 346 :ENKLILKKQN 3gwqA 325 :DRAIIGLGKR T0547 389 :LTLFDLGY 3gwqA 335 :DSAFDAGM T0547 429 :LLAIQ 3gwqA 343 :PEPAR T0547 453 :FWGLEQNFPIMPLDRLDEEPTRS 3gwqA 348 :HYRPGNEAPRDIAASEGWEIFGL T0547 495 :KPLFLHDVDVEKENYFLG 3gwqA 371 :MDQHAYLRIPAGADLKVG T0547 525 :MK 3gwqA 403 :DK T0547 534 :TEAIISINEKG 3gwqA 405 :WRQVLVVDPAY T0547 545 :Y 3gwqA 419 :E T0547 606 :LKSIGV 3gwqA 420 :VIETFF Number of specific fragments extracted= 26 number of extra gaps= 1 total=21796 Will force an alignment to be made, even if fragment is small Number of alignments=985 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 Warning: unaligning (T0547)S555 because last residue in template chain is (3gwqA)F425 T0547 31 :IIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 31 :AARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 127 :APITVNGFKDRELINIGFIAAEMGH 3gwqA 115 :RVLMANQLVGRRNMMMVAELLSDPE T0547 152 :NITLTIEGLNELEAIIDIAKE 3gwqA 141 :EFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHSAGV 3gwqA 162 :VNKQLQVLLELGVPGGRT T0547 205 :GLTS 3gwqA 180 :GVRD T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHLG 3gwqA 185 :AQRNAVLEAITRYPDTLKLAGVELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAKNLK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERFARA T0547 268 :AINLGGGLAV 3gwqA 244 :AVLSGAGSAW T0547 292 :LREYANDVVFI 3gwqA 254 :YDVVAEEFVKA T0547 307 :A 3gwqA 265 :S T0547 311 :KDLEPDIFIESGRFV 3gwqA 266 :ETGKVEVVLRPGCYL T0547 328 :NHAVLIA 3gwqA 310 :PALQLWA T0547 337 :LELFSQ 3gwqA 319 :QSIPEP T0547 345 :AENKLILKKQN 3gwqA 344 :EPARHYRPGNE T0547 373 :NALEYLHDSID 3gwqA 361 :ASEGWEIFGLM T0547 393 :DLGYVDLQDR 3gwqA 373 :QHAYLRIPAG T0547 403 :SNAEILTHLITKKAILLLGD 3gwqA 385 :LKVGDMIAFDISHPCLTFDK T0547 460 :F 3gwqA 405 :W T0547 508 :NY 3gwqA 406 :RQ T0547 538 :ISINEKGYEVEGIIEAQ 3gwqA 408 :VLVVDPAYRVTEVIETF Number of specific fragments extracted= 22 number of extra gaps= 1 total=21818 Will force an alignment to be made, even if fragment is small Number of alignments=986 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)V299 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)D312 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 29 :PA 3gwqA 36 :WN T0547 38 :LRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 38 :LLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 128 :PITVNGF 3gwqA 115 :RVLMANQ T0547 135 :KDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3gwqA 124 :GRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHSA 3gwqA 162 :VNKQLQVLLELGVPGG T0547 203 :KFGLTSTELIEAVNLLKENKL 3gwqA 178 :RTGVRDAAQRNAVLEAITRYP T0547 224 :LEQFTMIHFHLG 3gwqA 200 :TLKLAGVELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMG 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQE T0547 263 :AKNLKAINLGG 3gwqA 240 :ARAPAVLSGAG T0547 274 :GLAV 3gwqA 267 :TGKV T0547 283 :KNEKSRNYTLREYAND 3gwqA 279 :YLTHDVGIYRKAQTDI T0547 313 :LEP 3gwqA 307 :GLL T0547 328 :NHAVLIA 3gwqA 310 :PALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 347 :NKLILKKQNPKLI 3gwqA 326 :RAIIGLGKRDSAF T0547 367 :KSIKP 3gwqA 339 :DAGMP T0547 399 :LQDR 3gwqA 353 :NEAP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLL 3gwqA 360 :AASEGWEIFGLMDQHAYLRIPAGADLKV T0547 438 :E 3gwqA 388 :G T0547 442 :VNFSLFQSMPD 3gwqA 389 :DMIAFDISHPC T0547 466 :DRLDEEP 3gwqA 400 :LTFDKWR T0547 536 :AIISINEKG 3gwqA 407 :QVLVVDPAY T0547 546 :EVEGIIEA 3gwqA 416 :RVTEVIET T0547 610 :GV 3gwqA 424 :FF Number of specific fragments extracted= 26 number of extra gaps= 1 total=21844 Will force an alignment to be made, even if fragment is small Number of alignments=987 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)P356 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)K367 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)S368 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 30 :AIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 30 :DAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3gwqA 95 :WGITLATAHQVRAAYHGGVSRVLMANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHSAGVGI 3gwqA 162 :VNKQLQVLLELGVPGGRTGV T0547 206 :LTSTELIEAVNLLKENKLLEQFTMIHFHLGS 3gwqA 182 :RDAAQRNAVLEAITRYPDTLKLAGVELYEGV T0547 238 :ITEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 213 :LKEEHEVREFLQSAVAVTRELVEQERF T0547 282 :FKNEKSRNYTLREYANDV 3gwqA 240 :ARAPAVLSGAGSAWYDVV T0547 303 :LKNIAEQKKDLEPDIFIESGRFVAANHAVLI 3gwqA 258 :AEEFVKASETGKVEVVLRPGCYLTHDVGIYR T0547 340 :FSQEY 3gwqA 289 :KAQTD T0547 357 :KLIDELYDLY 3gwqA 307 :GLLPALQLWA T0547 369 :IKPS 3gwqA 319 :QSIP T0547 377 :YLHDSIDHLESILTLFDLGYVD 3gwqA 323 :EPDRAIIGLGKRDSAFDAGMPE T0547 399 :LQDR 3gwqA 348 :HYRP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 3gwqA 354 :EAPRDIAASEGWEIFGLMDQHAYLRIPAGADLKV T0547 451 :PDFWGLEQNFPIMPLDRLDEE 3gwqA 388 :GDMIAFDISHPCLTFDKWRQV Number of specific fragments extracted= 15 number of extra gaps= 1 total=21859 Will force an alignment to be made, even if fragment is small Number of alignments=988 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFN 3gwqA 42 :DVSLPAAVLYADRVEHNLKWMQAFVA T0547 76 :KGGFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 68 :EYGVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 127 :APITVNGFKDRELINIGFIAAEM 3gwqA 115 :RVLMANQLVGRRNMMMVAELLSD T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHSAGVGI 3gwqA 162 :VNKQLQVLLELGVPGGRTGV T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHLG 3gwqA 183 :DAAQRNAVLEAITRYPDTLKLAGVELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERF T0547 274 :GLAVEYSQFKNEKSRNYTLREYANDV 3gwqA 240 :ARAPAVLSGAGSAWYDVVAEEFVKAS T0547 300 :VFILKNIAEQ 3gwqA 285 :GIYRKAQTDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 347 :NKLILKK 3gwqA 326 :RAIIGLG T0547 387 :SILTLFDLGYVDLQDR 3gwqA 333 :KRDSAFDAGMPEPARH T0547 421 :GDKQNPAD 3gwqA 351 :PGNEAPRD T0547 462 :IMPLDRLD 3gwqA 359 :IAASEGWE T0547 489 :ISYSKDKPL 3gwqA 367 :IFGLMDQHA T0547 498 :FLHDV 3gwqA 394 :DISHP T0547 525 :MKHNLF 3gwqA 403 :DKWRQV T0547 538 :ISINEKGYEVEG 3gwqA 409 :LVVDPAYRVTEV Number of specific fragments extracted= 20 number of extra gaps= 1 total=21879 Will force an alignment to be made, even if fragment is small Number of alignments=989 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)P356 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 T0547 29 :PAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 29 :TDAARLEWNLLNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETG T0547 105 :NYGLEAGSKAELLLAMAYNNE 3gwqA 94 :AWGITLATAHQVRAAYHGGVS T0547 127 :APITVNGFKDRELINIGF 3gwqA 115 :RVLMANQLVGRRNMMMVA T0547 145 :IAAEMGHNITLTIEGLNELEAIIDIAKE 3gwqA 134 :LLSDPEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHS 3gwqA 162 :VNKQLQVLLELGVPG T0547 190 :GVG 3gwqA 177 :GRT T0547 205 :GLTS 3gwqA 180 :GVRD T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHLG 3gwqA 185 :AQRNAVLEAITRYPDTLKLAGVELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAKNLKA 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERFARAP T0547 272 :GGGLAV 3gwqA 248 :GAGSAW T0547 292 :LREYANDV 3gwqA 254 :YDVVAEEF T0547 309 :QKKDLEPDIFIE 3gwqA 262 :VKASETGKVEVV T0547 321 :SGRFVAANHAVLIA 3gwqA 276 :PGCYLTHDVGIYRK T0547 351 :LKKQN 3gwqA 290 :AQTDI Number of specific fragments extracted= 15 number of extra gaps= 0 total=21894 Will force an alignment to be made, even if fragment is small Number of alignments=990 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)K310 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)F324 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFN 3gwqA 41 :EDVSLPAAVLYADRVEHNLKWMQAFVA T0547 72 :EFG 3gwqA 68 :EYG T0547 79 :FNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 71 :VKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 127 :APITVNGFKDRELINIGFIAAEM 3gwqA 115 :RVLMANQLVGRRNMMMVAELLSD T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3gwqA 139 :EFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHSAGVGI 3gwqA 162 :VNKQLQVLLELGVPGGRTGV T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHLG 3gwqA 185 :AQRNAVLEAITRYPDTLKLAGVELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQ T0547 263 :AKN 3gwqA 237 :ERF T0547 274 :GLAVEYSQF 3gwqA 240 :ARAPAVLSG T0547 285 :EKSRNY 3gwqA 281 :THDVGI T0547 302 :ILKNIAEQ 3gwqA 287 :YRKAQTDI T0547 325 :VAANHAVLIA 3gwqA 307 :GLLPALQLWA T0547 337 :LELFSQ 3gwqA 319 :QSIPEP T0547 346 :ENKLILKKQN 3gwqA 325 :DRAIIGLGKR T0547 389 :LTLFDLGY 3gwqA 335 :DSAFDAGM T0547 429 :LLAIQ 3gwqA 343 :PEPAR T0547 453 :FWGLEQNFPIMPLDRLDEEPTRS 3gwqA 348 :HYRPGNEAPRDIAASEGWEIFGL T0547 495 :KPLFLHDVDVEKENYFLG 3gwqA 371 :MDQHAYLRIPAGADLKVG Number of specific fragments extracted= 20 number of extra gaps= 1 total=21914 Will force an alignment to be made, even if fragment is small Number of alignments=991 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 39 :LNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 127 :APITVNGFKDRELINIGFIAAEMGH 3gwqA 115 :RVLMANQLVGRRNMMMVAELLSDPE T0547 152 :NITLTIEGLNELEAIIDIAKE 3gwqA 141 :EFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHSAGV 3gwqA 162 :VNKQLQVLLELGVPGGRT T0547 205 :GLTS 3gwqA 180 :GVRD T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHLG 3gwqA 185 :AQRNAVLEAITRYPDTLKLAGVELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMGAKNLK 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQERFARA T0547 268 :AINLGGGLAV 3gwqA 244 :AVLSGAGSAW T0547 292 :LREYANDVVFI 3gwqA 254 :YDVVAEEFVKA T0547 307 :A 3gwqA 265 :S T0547 311 :KDLEPDIFIESGRFV 3gwqA 266 :ETGKVEVVLRPGCYL T0547 328 :NHAVLIA 3gwqA 310 :PALQLWA T0547 337 :LELFSQ 3gwqA 319 :QSIPEP T0547 345 :AENKLILKKQN 3gwqA 344 :EPARHYRPGNE T0547 373 :NALEYLHDSID 3gwqA 361 :ASEGWEIFGLM T0547 393 :DLGYVDLQDR 3gwqA 373 :QHAYLRIPAG T0547 403 :SNAEILTHLITKKAILLLGD 3gwqA 385 :LKVGDMIAFDISHPCLTFDK T0547 460 :F 3gwqA 405 :W T0547 508 :NY 3gwqA 406 :RQ T0547 538 :ISINEKGYEVEGIIE 3gwqA 408 :VLVVDPAYRVTEVIE Number of specific fragments extracted= 22 number of extra gaps= 1 total=21936 Will force an alignment to be made, even if fragment is small Number of alignments=992 # 3gwqA read from all-align.a2m # found chain 3gwqA in template set Warning: unaligning (T0547)V299 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3gwqA)E306 Warning: unaligning (T0547)D312 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3gwqA)E306 Warning: unaligning (T0547)P335 because of BadResidue code BAD_PEPTIDE in next template residue (3gwqA)V318 Warning: unaligning (T0547)V336 because of BadResidue code BAD_PEPTIDE at template residue (3gwqA)V318 T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3gwqA 39 :LNEDVSLPAAVLYADRVEHNLKWMQAFVAEY T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLGK 3gwqA 70 :GVKLAPHGKTTMAPQLFRRQLETGA T0547 106 :YGLEAGSKAELLLAMAYNNE 3gwqA 95 :WGITLATAHQVRAAYHGGVS T0547 128 :PITVNGF 3gwqA 115 :RVLMANQ T0547 135 :KDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3gwqA 124 :GRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKS T0547 174 :FKPKPNIGLRVRLHSA 3gwqA 162 :VNKQLQVLLELGVPGG T0547 203 :KFGLTSTELIEAVNLLKENKL 3gwqA 178 :RTGVRDAAQRNAVLEAITRYP T0547 224 :LEQFTMIHFHLG 3gwqA 200 :TLKLAGVELYEG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMG 3gwqA 212 :VLKEEHEVREFLQSAVAVTRELVEQE T0547 263 :AKNLKAINLGG 3gwqA 240 :ARAPAVLSGAG T0547 274 :GLAV 3gwqA 267 :TGKV T0547 283 :KNEKSRNYTLREYAND 3gwqA 279 :YLTHDVGIYRKAQTDI T0547 313 :LEP 3gwqA 307 :GLL T0547 328 :NHAVLIA 3gwqA 310 :PALQLWA T0547 337 :LELFSQE 3gwqA 319 :QSIPEPD T0547 347 :NKLILKKQNPKLI 3gwqA 326 :RAIIGLGKRDSAF T0547 367 :KSIKP 3gwqA 339 :DAGMP T0547 399 :LQDR 3gwqA 353 :NEAP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLL 3gwqA 360 :AASEGWEIFGLMDQHAYLRIPAGADLKV T0547 438 :E 3gwqA 388 :G T0547 442 :VNFSLFQSMP 3gwqA 389 :DMIAFDISHP T0547 465 :LDRLDEEP 3gwqA 399 :CLTFDKWR T0547 536 :AIISINEKGY 3gwqA 407 :QVLVVDPAYR T0547 547 :VEGIIE 3gwqA 417 :VTEVIE Number of specific fragments extracted= 24 number of extra gaps= 1 total=21960 Will force an alignment to be made, even if fragment is small Number of alignments=993 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 49 :LRFPHLIQ 3hurA 6 :HRPTWVSV T0547 58 :QIENIYGNFNKARKEFG 3hurA 14 :DLDAAAHNLQEIREWTK T0547 78 :GFNAVYPLKV 3hurA 31 :AKKVYAVLKA T0547 88 :NQYPGFVKNLVK 3hurA 45 :LGAIPLAKAFQE T0547 100 :LG 3hurA 58 :AS T0547 105 :NYGLEAGSKAELLLAMAYN 3hurA 60 :ADALIVSNLDEALELRQAD T0547 125 :EGAPIT 3hurA 79 :LTLPIW T0547 133 :GFKDRE 3hurA 87 :GAWDYS T0547 141 :NIGFIAAE 3hurA 93 :DLKLFIDH T0547 152 :NITLTIEGLNELEAIIDI 3hurA 101 :DIVITIPSLAWLQNLPDF T0547 175 :KPKPNIGLRVR 3hurA 119 :EGTLKVSLAID T0547 197 :SGG 3hurA 130 :TGM T0547 202 :SKF 3hurA 133 :TRI T0547 207 :TS 3hurA 138 :DK T0547 209 :TELIEAVNLLKENKLL 3hurA 141 :DEISAAKKIIDKNPQL T0547 226 :QFTMIHFHLGSQITEIHP 3hurA 157 :DLFSVYTHFATADEAGEK T0547 337 :LELFSQEYAENKLILKKQNPKLI 3hurA 176 :KAYFEEQLRRWQELTINQGFDPS T0547 366 :YKSIKPSNALEYLHDS 3hurA 199 :LFSMANSATCIWHHDD T0547 385 :LESILTLFDLGYVDLQDRSNAEI 3hurA 215 :PRISFAAIRPGQLISGVNVSNGE T0547 491 :YSKDKPLFLHDVDVEKENYFLGFFLVG 3hurA 243 :NLHLERIFSVCSEIADVRFVKKDQSLS T0547 521 :EVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLE 3hurA 285 :LPFGYNDGWLRRMQKSSVIINGKRMPIIGRITMDQTMVKLD T0547 563 :LDYDIHAIMDILNERISNS 3hurA 326 :RKYPIGTRVTLIGKDGGEQ T0547 582 :KLVNDKQKKHILGELYLFLNDNGYLKSIG 3hurA 347 :VEEVANYSHTIVDEIQTTLAPRIKRIYTG Number of specific fragments extracted= 23 number of extra gaps= 2 total=21983 Will force an alignment to be made, even if fragment is small Number of alignments=994 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 58 :QIENIYGNFNKARKEFG 3hurA 14 :DLDAAAHNLQEIREWTK T0547 78 :GFNAVYPLKV 3hurA 31 :AKKVYAVLKA T0547 88 :NQYPGFVKNLVK 3hurA 45 :LGAIPLAKAFQE T0547 100 :LG 3hurA 58 :AS T0547 105 :NYGLEAGSKAELLLAMAYN 3hurA 60 :ADALIVSNLDEALELRQAD T0547 125 :EGAPIT 3hurA 79 :LTLPIW T0547 133 :GFKDRE 3hurA 87 :GAWDYS T0547 141 :NIGFIAAE 3hurA 93 :DLKLFIDH T0547 152 :NITLTIEGLNELEAIIDI 3hurA 101 :DIVITIPSLAWLQNLPDF T0547 175 :KPKPNIGLRVR 3hurA 119 :EGTLKVSLAID T0547 197 :SGG 3hurA 130 :TGM T0547 202 :SKF 3hurA 133 :TRI T0547 207 :TS 3hurA 138 :DK T0547 209 :TELIEAVNLLKENKLL 3hurA 141 :DEISAAKKIIDKNPQL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKS 3hurA 157 :DLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMANSATCIWHHDDPRIS T0547 288 :RNYTLREYAN 3hurA 227 :LISGVNVSNG T0547 298 :D 3hurA 239 :K T0547 299 :V 3hurA 246 :L T0547 300 :VFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPV 3hurA 249 :IFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATL T0547 341 :SQEYAENKLILKKQNPKLIDE 3hurA 286 :PFGYNDGWLRRMQKSSVIING T0547 362 :LYDLYKSIKPSNALEYLHDS 3hurA 321 :MVKLDRKYPIGTRVTLIGKD Number of specific fragments extracted= 21 number of extra gaps= 2 total=22004 Will force an alignment to be made, even if fragment is small Number of alignments=995 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)M571 because last residue in template chain is (3hurA)Y385 T0547 49 :LRFPHLIQKQIENIYGNFNKARKEFG 3hurA 5 :IHRPTWVSVDLDAAAHNLQEIREWTK T0547 78 :GFNAVYPLKVN 3hurA 31 :AKKVYAVLKAD T0547 89 :QYPGFVKNLVKL 3hurA 46 :GAIPLAKAFQET T0547 101 :GKD 3hurA 59 :SAD T0547 107 :GLEAGSKAELLLAMAYN 3hurA 62 :ALIVSNLDEALELRQAD T0547 125 :EGAPIT 3hurA 79 :LTLPIW T0547 133 :GFKDRELINI 3hurA 87 :GAWDYSDLKL T0547 145 :IAA 3hurA 97 :FID T0547 152 :NITLTIEGLNELEAIIDI 3hurA 101 :DIVITIPSLAWLQNLPDF T0547 175 :KPKPNIGLRVRL 3hurA 119 :EGTLKVSLAIDT T0547 188 :SA 3hurA 132 :MT T0547 203 :KF 3hurA 134 :RI T0547 207 :TSTELIEAVNLLKENKLL 3hurA 139 :KADEISAAKKIIDKNPQL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQ 3hurA 157 :DLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMANSATCIWHH T0547 284 :NEKSRNYTLR 3hurA 213 :DDPRISFAAI T0547 294 :EYAN 3hurA 233 :VSNG T0547 436 :VQERYLVNFSLFQSMPDFWGLEQ 3hurA 262 :VKKDQSLSYGASERMPEDGYVAT T0547 460 :FPIMPLD 3hurA 285 :LPFGYND T0547 467 :RLDEEP 3hurA 295 :RRMQKS T0547 475 :SASIWDITCDSDGEISY 3hurA 301 :SVIINGKRMPIIGRITM T0547 496 :PLFLHDVD 3hurA 318 :DQTMVKLD T0547 513 :FFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYDIHAI 3hurA 327 :KYPIGTRVTLIGKDGGEQITVEEVANYSHTIVDEIQTTLAPRIKRIYTGDLAEVIGAN Number of specific fragments extracted= 22 number of extra gaps= 2 total=22026 Will force an alignment to be made, even if fragment is small Number of alignments=996 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 52 :PHLIQKQIENIYGNFNKARKEFG 3hurA 8 :PTWVSVDLDAAAHNLQEIREWTK T0547 78 :GFNAVYPLKVN 3hurA 31 :AKKVYAVLKAD T0547 89 :QYPGFVKNLVKL 3hurA 46 :GAIPLAKAFQET T0547 101 :GKD 3hurA 59 :SAD T0547 107 :GLEAGSKAELLLAMAYN 3hurA 62 :ALIVSNLDEALELRQAD T0547 125 :EGAPIT 3hurA 79 :LTLPIW T0547 133 :GFKDRELINI 3hurA 87 :GAWDYSDLKL T0547 145 :IAA 3hurA 97 :FID T0547 152 :NITLTIEGLNELEAIIDI 3hurA 101 :DIVITIPSLAWLQNLPDF T0547 175 :KPKPNIGLRVRL 3hurA 119 :EGTLKVSLAIDT T0547 188 :SA 3hurA 132 :MT T0547 203 :KF 3hurA 134 :RI T0547 207 :TSTELIEAVNLLKENKLL 3hurA 139 :KADEISAAKKIIDKNPQL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQ 3hurA 157 :DLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMANSATCIWHH T0547 284 :NEKSRNYTLREYANDV 3hurA 213 :DDPRISFAAIRPGQLI T0547 317 :IFIESGRFVAANHAVLIAPVLEL 3hurA 237 :ELKMPPNLHLERIFSVCSEIADV T0547 340 :FSQEYAENKLILKKQNPKLIDELY 3hurA 285 :LPFGYNDGWLRRMQKSSVIINGKR T0547 364 :DLYKSIKPSNALEYLHDSID 3hurA 323 :KLDRKYPIGTRVTLIGKDGG Number of specific fragments extracted= 18 number of extra gaps= 2 total=22044 Will force an alignment to be made, even if fragment is small Number of alignments=997 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)I140 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N141 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 2 :MDYGIDIW 3hurA 3 :TAIHRPTW T0547 30 :AIID 3hurA 11 :VSVD T0547 59 :IENIYGNFNKARKEFG 3hurA 15 :LDAAAHNLQEIREWTK T0547 78 :GFNAVYPLKVNQ 3hurA 31 :AKKVYAVLKADG T0547 104 :YNYGLEAGSKAEL 3hurA 43 :YGLGAIPLAKAFQ T0547 117 :LLAMAYNNEGAPITVNGFKDREL 3hurA 62 :ALIVSNLDEALELRQADLTLPIW T0547 142 :IGFI 3hurA 87 :GAWD T0547 146 :AAEMGHNITLTIEGLNELEAIIDI 3hurA 95 :KLFIDHDIVITIPSLAWLQNLPDF T0547 186 :LHSAGVGIWAKSG 3hurA 119 :EGTLKVSLAIDTG T0547 202 :SKF 3hurA 133 :TRI T0547 207 :TSTELIEAVNL 3hurA 138 :DKADEISAAKK T0547 218 :LKENKLLEQFTMIHFHLGSQIT 3hurA 151 :DKNPQLDLFSVYTHFATADEAG T0547 241 :IHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVE 3hurA 173 :EKSKAYFEEQLRRWQELTINQGFDPSLFSMANSATCIW T0547 279 :YSQFKNEKSR 3hurA 214 :DPRISFAAIR T0547 289 :NYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPV 3hurA 238 :LKMPPNLHLERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATL T0547 537 :IISINEKGYEVEGIIEAQSILDTLEDL 3hurA 301 :SVIINGKRMPIIGRITMDQTMVKLDRK T0547 565 :YDIHAIMDILNERISNSKLVN 3hurA 332 :TRVTLIGKDGGEQITVEEVAN T0547 588 :QKKHILGELYLF 3hurA 353 :YSHTIVDEIQTT T0547 600 :LNDNGYLKSIGV 3hurA 374 :TGDLAEVIGANY Number of specific fragments extracted= 19 number of extra gaps= 2 total=22063 Will force an alignment to be made, even if fragment is small Number of alignments=998 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)I140 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N141 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 106 :YGLEAGSKAELL 3hurA 43 :YGLGAIPLAKAF T0547 118 :LAMAYNNEGAPITVNGFKDREL 3hurA 63 :LIVSNLDEALELRQADLTLPIW T0547 142 :IGFI 3hurA 87 :GAWD T0547 146 :AAEMGHNITLTIEGLNELEAIIDI 3hurA 95 :KLFIDHDIVITIPSLAWLQNLPDF T0547 186 :LHSAGVGIWAKSG 3hurA 119 :EGTLKVSLAIDTG T0547 202 :SKF 3hurA 133 :TRI T0547 207 :TSTELIEAVNL 3hurA 138 :DKADEISAAKK T0547 218 :LKENKLLEQFTMIHFHLGSQIT 3hurA 151 :DKNPQLDLFSVYTHFATADEAG T0547 241 :IHPLKKALNEAGNIYTELR 3hurA 173 :EKSKAYFEEQLRRWQELTI Number of specific fragments extracted= 9 number of extra gaps= 2 total=22072 Will force an alignment to be made, even if fragment is small Number of alignments=999 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)D3 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)Y605 because last residue in template chain is (3hurA)Y385 T0547 4 :YGIDI 3hurA 3 :TAIHR T0547 46 :PLLL 3hurA 8 :PTWV T0547 50 :RFPHLIQKQIENIYGN 3hurA 13 :VDLDAAAHNLQEIREW T0547 77 :GGFNAVYPL 3hurA 29 :TKAKKVYAV T0547 86 :KV 3hurA 39 :KA T0547 88 :NQYPGFVKNLVKLG 3hurA 45 :LGAIPLAKAFQETA T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVN 3hurA 59 :SADALIVSNLDEALELRQADLTLPIW T0547 135 :KDRELINIGF 3hurA 87 :GAWDYSDLKL T0547 146 :AAEMGH 3hurA 97 :FIDHDI T0547 154 :TLTIEGLNELEAIIDIAKE 3hurA 103 :VITIPSLAWLQNLPDFEGT T0547 178 :PNIGLRVRLH 3hurA 122 :LKVSLAIDTG T0547 188 :S 3hurA 133 :T T0547 203 :KF 3hurA 134 :RI T0547 207 :TST 3hurA 138 :DKA T0547 210 :ELIEAVNLLKENKLLE 3hurA 142 :EISAAKKIIDKNPQLD T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 3hurA 158 :LFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQ T0547 274 :GL 3hurA 194 :GF T0547 283 :KNEK 3hurA 196 :DPSL T0547 288 :R 3hurA 200 :F T0547 291 :TLREYANDVVFI 3hurA 201 :SMANSATCIWHH T0547 313 :LEPDIFIE 3hurA 213 :DDPRISFA T0547 326 :AANHAVLIAPVL 3hurA 221 :AIRPGQLISGVN T0547 341 :SQEY 3hurA 233 :VSNG T0547 357 :KLIDE 3hurA 237 :ELKMP T0547 364 :DLYKSIKPSNALEYLHDSIDHLE 3hurA 242 :PNLHLERIFSVCSEIADVRFVKK T0547 389 :LTLFDLGYVD 3hurA 265 :DQSLSYGASE T0547 399 :LQD 3hurA 276 :MPE T0547 414 :KKAILLLGDKQN 3hurA 279 :DGYVATLPFGYN T0547 426 :PAD 3hurA 294 :LRR T0547 429 :LLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFP 3hurA 300 :SSVIINGKRMPIIGRITMDQTMVKLDRKYPIGT T0547 535 :EAIISINEKGYE 3hurA 333 :RVTLIGKDGGEQ T0547 554 :QSILDTLEDLDYDIHAIMDILNERISNSKLVND 3hurA 345 :ITVEEVANYSHTIVDEIQTTLAPRIKRIYTGDL T0547 598 :LFLNDNG 3hurA 378 :AEVIGAN Number of specific fragments extracted= 33 number of extra gaps= 2 total=22105 Will force an alignment to be made, even if fragment is small Number of alignments=1000 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)R39 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)Y565 because last residue in template chain is (3hurA)Y385 T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYG 3hurA 3 :TAIHRPTWVSVDLDAAAHNLQEIRE T0547 75 :YKGGFNAVYPLKVNQY 3hurA 28 :WTKAKKVYAVLKADGY T0547 91 :PGFVKNLVKLGKD 3hurA 48 :IPLAKAFQETASA T0547 106 :YGLEAGSKAELLLAMAYNN 3hurA 61 :DALIVSNLDEALELRQADL T0547 126 :GAPIT 3hurA 80 :TLPIW T0547 133 :GFKDRE 3hurA 87 :GAWDYS T0547 142 :IGF 3hurA 94 :LKL T0547 146 :AAEMG 3hurA 97 :FIDHD T0547 153 :ITLTIEGLNELE 3hurA 102 :IVITIPSLAWLQ T0547 173 :RFKPKPNIGLRVRLH 3hurA 117 :DFEGTLKVSLAIDTG T0547 188 :SAG 3hurA 133 :TRI T0547 193 :IW 3hurA 138 :DK T0547 208 :STELIEAVNLLKENKLL 3hurA 140 :ADEISAAKKIIDKNPQL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLG 3hurA 157 :DLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMA T0547 274 :GL 3hurA 218 :SF T0547 280 :SQFKNE 3hurA 220 :AAIRPG T0547 307 :AEQKKD 3hurA 226 :QLISGV T0547 313 :LEPDIFIESG 3hurA 236 :GELKMPPNLH T0547 326 :AANHAVLIAPVLELFSQ 3hurA 246 :LERIFSVCSEIADVRFV T0547 345 :AENKLILKKQ 3hurA 271 :GASERMPEDG T0547 368 :SIKPS 3hurA 281 :YVATL T0547 393 :DLGYVD 3hurA 286 :PFGYND T0547 399 :LQDR 3hurA 293 :WLRR T0547 424 :QNPAD 3hurA 297 :MQKSS T0547 442 :VN 3hurA 304 :IN T0547 460 :FPIMPLD 3hurA 306 :GKRMPII T0547 470 :EEPTRSASIWDITCDSD 3hurA 313 :GRITMDQTMVKLDRKYP T0547 487 :GEISYSKDKP 3hurA 331 :GTRVTLIGKD T0547 497 :LFLHDVDVEKENYFLGFFL 3hurA 345 :ITVEEVANYSHTIVDEIQT T0547 530 :FTHPTEAIISINE 3hurA 364 :TLAPRIKRIYTGD T0547 557 :LDTLEDLD 3hurA 377 :LAEVIGAN Number of specific fragments extracted= 31 number of extra gaps= 2 total=22136 Will force an alignment to be made, even if fragment is small Number of alignments=1001 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)R39 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)E552 because last residue in template chain is (3hurA)Y385 T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNF 3hurA 3 :TAIHRPTWVSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQY 3hurA 30 :KAKKVYAVLKADGY T0547 91 :PGFVKNLVKLGK 3hurA 48 :IPLAKAFQETAS T0547 105 :NYGLEAGSKAELLLAMAYNNE 3hurA 60 :ADALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRELIN 3hurA 87 :GAWDYSDLK T0547 144 :F 3hurA 96 :L T0547 146 :AAEMG 3hurA 97 :FIDHD T0547 153 :ITLTIEGLNELEAI 3hurA 102 :IVITIPSLAWLQNL T0547 171 :KE 3hurA 116 :PD T0547 174 :FKPKPNIGLRVRLH 3hurA 118 :FEGTLKVSLAIDTG T0547 188 :S 3hurA 133 :T T0547 203 :KF 3hurA 134 :RI T0547 207 :TSTELIEAVNLLKENKLL 3hurA 139 :KADEISAAKKIIDKNPQL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVE 3hurA 157 :DLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMANSATCI T0547 282 :FKNEKS 3hurA 210 :WHHDDP T0547 289 :NYTLR 3hurA 216 :RISFA T0547 318 :FIESGRFVAA 3hurA 221 :AIRPGQLISG T0547 328 :NHAVLIAPVLELFSQ 3hurA 248 :RIFSVCSEIADVRFV T0547 343 :EYAENKLILK 3hurA 277 :PEDGYVATLP T0547 353 :KQNPKLIDE 3hurA 291 :DGWLRRMQK T0547 368 :SIKPSN 3hurA 301 :SVIING T0547 380 :DSIDHLESI 3hurA 307 :KRMPIIGRI T0547 391 :LFDLGYVDL 3hurA 316 :TMDQTMVKL T0547 400 :QDRSNAEILTHLITKK 3hurA 326 :RKYPIGTRVTLIGKDG T0547 417 :ILLLGDKQN 3hurA 342 :GEQITVEEV T0547 427 :AD 3hurA 354 :SH T0547 429 :LLA 3hurA 357 :IVD T0547 435 :EVQER 3hurA 360 :EIQTT T0547 446 :L 3hurA 365 :L T0547 533 :PTEAIISINEKGYEVEGII 3hurA 366 :APRIKRIYTGDLAEVIGAN Number of specific fragments extracted= 31 number of extra gaps= 2 total=22167 Will force an alignment to be made, even if fragment is small Number of alignments=1002 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)R39 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)Y565 because last residue in template chain is (3hurA)Y385 T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNF 3hurA 3 :TAIHRPTWVSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVN 3hurA 30 :KAKKVYAVLKAD T0547 89 :QYPGFVKNLVKLGKD 3hurA 46 :GAIPLAKAFQETASA T0547 106 :YGLEAGSKAELLLAMAYNNE 3hurA 61 :DALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRE 3hurA 87 :GAWDYS T0547 141 :NIGF 3hurA 93 :DLKL T0547 146 :AAEMG 3hurA 97 :FIDHD T0547 153 :ITLTIEGLNELEAIID 3hurA 102 :IVITIPSLAWLQNLPD T0547 174 :FKPKPNIGLRVRLH 3hurA 118 :FEGTLKVSLAIDTG T0547 189 :AGV 3hurA 133 :TRI T0547 194 :W 3hurA 138 :D T0547 207 :TSTELIEAVNLLKENKLL 3hurA 139 :KADEISAAKKIIDKNPQL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 3hurA 157 :DLFSVYTHFATADEAGEKSKAYFEEQLRRWQEL T0547 259 :RKMGA 3hurA 191 :INQGF T0547 265 :NLKAINLG 3hurA 196 :DPSLFSMA T0547 280 :SQFKNEKSR 3hurA 226 :QLISGVNVS T0547 313 :LEPDIFIESG 3hurA 236 :GELKMPPNLH T0547 326 :AANHAVLIAPVLELFSQ 3hurA 246 :LERIFSVCSEIADVRFV T0547 347 :NKLILKK 3hurA 273 :SERMPED T0547 365 :LYKSIKPSNALE 3hurA 280 :GYVATLPFGYND T0547 380 :DSIDHLESI 3hurA 307 :KRMPIIGRI T0547 391 :LFDLGYVDLQ 3hurA 316 :TMDQTMVKLD T0547 401 :DRSNAEILTHLITKKA 3hurA 327 :KYPIGTRVTLIGKDGG T0547 417 :ILLLGD 3hurA 344 :QITVEE T0547 430 :LAIQ 3hurA 350 :VANY T0547 435 :E 3hurA 354 :S T0547 495 :KPLFLHDVD 3hurA 355 :HTIVDEIQT T0547 515 :LVGA 3hurA 364 :TLAP T0547 534 :TEAIISINEK 3hurA 368 :RIKRIYTGDL T0547 558 :DTLEDLD 3hurA 378 :AEVIGAN Number of specific fragments extracted= 31 number of extra gaps= 2 total=22198 Will force an alignment to be made, even if fragment is small Number of alignments=1003 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)K28 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)N585 because last residue in template chain is (3hurA)Y385 T0547 29 :PA 3hurA 3 :TA T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 3hurA 5 :IHRPTWVSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQY 3hurA 30 :KAKKVYAVLKADGY T0547 91 :PGFVKNLVKLGK 3hurA 48 :IPLAKAFQETAS T0547 105 :NYGLEAGSKAELLLAMAYNNE 3hurA 60 :ADALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRELIN 3hurA 87 :GAWDYSDLK T0547 144 :F 3hurA 96 :L T0547 146 :AAEMG 3hurA 97 :FIDHD T0547 153 :ITLTIEGLNELE 3hurA 102 :IVITIPSLAWLQ T0547 174 :FKPKPNIGLRVRLH 3hurA 118 :FEGTLKVSLAIDTG T0547 189 :AGV 3hurA 133 :TRI T0547 194 :W 3hurA 138 :D T0547 207 :TSTELIEAVNLLKENKLL 3hurA 139 :KADEISAAKKIIDKNPQL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLG 3hurA 157 :DLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMA T0547 310 :KKDLEPDI 3hurA 212 :HDDPRISF T0547 318 :FIESGRFVAA 3hurA 221 :AIRPGQLISG T0547 328 :NHAVLIAPVLELFSQ 3hurA 248 :RIFSVCSEIADVRFV T0547 343 :EYAENKLILK 3hurA 277 :PEDGYVATLP T0547 353 :KQNPKLIDE 3hurA 288 :GYNDGWLRR T0547 377 :YLHDSIDHLESI 3hurA 304 :INGKRMPIIGRI T0547 391 :LFDLGYVDL 3hurA 316 :TMDQTMVKL T0547 400 :QDRSNAEILTHL 3hurA 326 :RKYPIGTRVTLI T0547 420 :LGDKQNPA 3hurA 338 :GKDGGEQI T0547 489 :ISYSKDKP 3hurA 348 :EEVANYSH T0547 497 :LFLHDVD 3hurA 364 :TLAPRIK T0547 549 :GIIEAQ 3hurA 371 :RIYTGD T0547 577 :RISNSKLV 3hurA 377 :LAEVIGAN Number of specific fragments extracted= 28 number of extra gaps= 2 total=22226 Will force an alignment to be made, even if fragment is small Number of alignments=1004 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)R39 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)Y565 because last residue in template chain is (3hurA)Y385 T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNF 3hurA 3 :TAIHRPTWVSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQ 3hurA 30 :KAKKVYAVLKADG T0547 90 :YPGFVKNLVKLGKD 3hurA 47 :AIPLAKAFQETASA T0547 106 :YGLEAGSKAELLLAMAYNNEG 3hurA 61 :DALIVSNLDEALELRQADLTL T0547 128 :PIT 3hurA 82 :PIW T0547 133 :GFKDRE 3hurA 87 :GAWDYS T0547 141 :NIGF 3hurA 93 :DLKL T0547 146 :AAEMG 3hurA 97 :FIDHD T0547 153 :ITLTIEGLNELE 3hurA 102 :IVITIPSLAWLQ T0547 174 :FKPKPNIGLRVRLH 3hurA 118 :FEGTLKVSLAIDTG T0547 188 :SAG 3hurA 133 :TRI T0547 206 :LTSTELIEAVNLLKENKLL 3hurA 138 :DKADEISAAKKIIDKNPQL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLG 3hurA 157 :DLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMA T0547 274 :GL 3hurA 218 :SF T0547 279 :YSQFKNEKSRNY 3hurA 229 :SGVNVSNGELKM T0547 310 :KKDLE 3hurA 242 :PNLHL T0547 327 :ANHAVLIAPVLELFSQ 3hurA 247 :ERIFSVCSEIADVRFV T0547 343 :EYAENKLILK 3hurA 277 :PEDGYVATLP T0547 353 :KQNPKLID 3hurA 288 :GYNDGWLR T0547 379 :HDSIDHLESI 3hurA 306 :GKRMPIIGRI T0547 391 :LFDLGYVDLQ 3hurA 316 :TMDQTMVKLD T0547 401 :DRSNAEILTHLI 3hurA 327 :KYPIGTRVTLIG T0547 421 :GDKQNPA 3hurA 339 :KDGGEQI T0547 477 :SIWDITCDSDGEIS 3hurA 346 :TVEEVANYSHTIVD T0547 547 :VEGIIEAQ 3hurA 360 :EIQTTLAP T0547 555 :SILDTLEDLD 3hurA 375 :GDLAEVIGAN Number of specific fragments extracted= 26 number of extra gaps= 2 total=22252 Will force an alignment to be made, even if fragment is small Number of alignments=1005 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 137 :RELINIGF 3hurA 89 :WDYSDLKL T0547 146 :AAEMGH 3hurA 97 :FIDHDI T0547 154 :TLTIEGLNELEAIIDIAKE 3hurA 103 :VITIPSLAWLQNLPDFEGT T0547 178 :PNIGLRVRLH 3hurA 122 :LKVSLAIDTG T0547 188 :S 3hurA 133 :T T0547 203 :KF 3hurA 134 :RI T0547 207 :TST 3hurA 138 :DKA T0547 210 :ELIEAVNLLKENKLLE 3hurA 142 :EISAAKKIIDKNPQLD T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 3hurA 158 :LFSVYTHFATADEAGEKSKAYFEEQLRRWQEL Number of specific fragments extracted= 9 number of extra gaps= 1 total=22261 Will force an alignment to be made, even if fragment is small Number of alignments=1006 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYG 3hurA 4 :AIHRPTWVSVDLDAAAHNLQEIRE T0547 75 :YKGGFNAVYPLKVNQY 3hurA 28 :WTKAKKVYAVLKADGY T0547 91 :PGFVKNLVKLGKD 3hurA 48 :IPLAKAFQETASA T0547 106 :YGLEAGSKAELLLAMAYNN 3hurA 61 :DALIVSNLDEALELRQADL T0547 126 :GAPIT 3hurA 80 :TLPIW T0547 133 :GFKDRE 3hurA 87 :GAWDYS T0547 142 :IGF 3hurA 94 :LKL T0547 146 :AAEMG 3hurA 97 :FIDHD T0547 153 :ITLTIEGLNELE 3hurA 102 :IVITIPSLAWLQ T0547 173 :RFKPKPNIGLRVRLH 3hurA 117 :DFEGTLKVSLAIDTG T0547 188 :SAG 3hurA 133 :TRI T0547 193 :IW 3hurA 138 :DK T0547 208 :STELIEAVNLLKENKLL 3hurA 140 :ADEISAAKKIIDKNPQL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLG 3hurA 157 :DLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMA T0547 274 :GL 3hurA 218 :SF T0547 280 :SQFKNE 3hurA 220 :AAIRPG T0547 307 :AEQKKD 3hurA 226 :QLISGV T0547 313 :LEPDIFIESG 3hurA 236 :GELKMPPNLH T0547 326 :AANHAVLIAPVLELFSQ 3hurA 246 :LERIFSVCSEIADVRFV T0547 345 :AENKLILKKQ 3hurA 271 :GASERMPEDG T0547 368 :SIKPS 3hurA 281 :YVATL T0547 393 :DLGYVD 3hurA 286 :PFGYND T0547 399 :LQDR 3hurA 293 :WLRR T0547 424 :QNPAD 3hurA 297 :MQKSS T0547 442 :VN 3hurA 304 :IN T0547 460 :FPIMPLD 3hurA 306 :GKRMPII T0547 470 :EEPTRSASIWDITCDSD 3hurA 313 :GRITMDQTMVKLDRKYP T0547 487 :GEISYSKDKP 3hurA 331 :GTRVTLIGKD T0547 497 :LFLHDVD 3hurA 345 :ITVEEVA Number of specific fragments extracted= 29 number of extra gaps= 2 total=22290 Will force an alignment to be made, even if fragment is small Number of alignments=1007 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)R39 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNF 3hurA 3 :TAIHRPTWVSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQY 3hurA 30 :KAKKVYAVLKADGY T0547 91 :PGFVKNLVKLGK 3hurA 48 :IPLAKAFQETAS T0547 105 :NYGLEAGSKAELLLAMAYNNE 3hurA 60 :ADALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRELIN 3hurA 87 :GAWDYSDLK T0547 144 :F 3hurA 96 :L T0547 146 :AAEMG 3hurA 97 :FIDHD T0547 153 :ITLTIEGLNELEAI 3hurA 102 :IVITIPSLAWLQNL T0547 171 :KE 3hurA 116 :PD T0547 174 :FKPKPNIGLRVRLH 3hurA 118 :FEGTLKVSLAIDTG T0547 188 :S 3hurA 133 :T T0547 203 :KF 3hurA 134 :RI T0547 207 :TSTELIEAVNLLKENKLL 3hurA 139 :KADEISAAKKIIDKNPQL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVE 3hurA 157 :DLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMANSATCI T0547 282 :FKNEKS 3hurA 210 :WHHDDP T0547 289 :NYTLR 3hurA 216 :RISFA T0547 318 :FIESGRFVAA 3hurA 221 :AIRPGQLISG T0547 328 :NHAVLIAPVLELFSQ 3hurA 248 :RIFSVCSEIADVRFV T0547 343 :EYAENKLILK 3hurA 277 :PEDGYVATLP T0547 353 :KQNPKLIDE 3hurA 291 :DGWLRRMQK T0547 368 :SIKPSN 3hurA 301 :SVIING T0547 380 :DSIDHLESI 3hurA 307 :KRMPIIGRI T0547 391 :LFDLGYVDL 3hurA 316 :TMDQTMVKL T0547 400 :QDRSNAEILTHLITKK 3hurA 326 :RKYPIGTRVTLIGKDG T0547 417 :ILLLGD 3hurA 342 :GEQITV Number of specific fragments extracted= 26 number of extra gaps= 2 total=22316 Will force an alignment to be made, even if fragment is small Number of alignments=1008 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 3hurA 5 :IHRPTWVSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVN 3hurA 30 :KAKKVYAVLKAD T0547 89 :QYPGFVKNLVKLGKD 3hurA 46 :GAIPLAKAFQETASA T0547 106 :YGLEAGSKAELLLAMAYNNE 3hurA 61 :DALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRE 3hurA 87 :GAWDYS T0547 141 :NIGF 3hurA 93 :DLKL T0547 146 :AAEMG 3hurA 97 :FIDHD T0547 153 :ITLTIEGLNELEAIID 3hurA 102 :IVITIPSLAWLQNLPD T0547 174 :FKPKPNIGLRVRLH 3hurA 118 :FEGTLKVSLAIDTG T0547 189 :AGV 3hurA 133 :TRI T0547 194 :W 3hurA 138 :D T0547 207 :TSTELIEAVNLLKENKLL 3hurA 139 :KADEISAAKKIIDKNPQL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTEL 3hurA 157 :DLFSVYTHFATADEAGEKSKAYFEEQLRRWQEL T0547 259 :RKMGA 3hurA 191 :INQGF T0547 265 :NLKAINLG 3hurA 196 :DPSLFSMA T0547 280 :SQFKNEKSR 3hurA 226 :QLISGVNVS T0547 313 :LEPDIFIESG 3hurA 236 :GELKMPPNLH T0547 326 :AANHAVLIAPVLELFSQ 3hurA 246 :LERIFSVCSEIADVRFV T0547 347 :NKLILKK 3hurA 273 :SERMPED T0547 365 :LYKSIKPSNALE 3hurA 280 :GYVATLPFGYND T0547 380 :DSIDHLESI 3hurA 307 :KRMPIIGRI T0547 391 :LFDLGYVDLQ 3hurA 316 :TMDQTMVKLD T0547 401 :DRSNAEILTHLITKKA 3hurA 327 :KYPIGTRVTLIGKDGG Number of specific fragments extracted= 24 number of extra gaps= 2 total=22340 Will force an alignment to be made, even if fragment is small Number of alignments=1009 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3hurA 6 :HRPTWVSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQY 3hurA 30 :KAKKVYAVLKADGY T0547 91 :PGFVKNLVKLGK 3hurA 48 :IPLAKAFQETAS T0547 105 :NYGLEAGSKAELLLAMAYNNE 3hurA 60 :ADALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRELIN 3hurA 87 :GAWDYSDLK T0547 144 :F 3hurA 96 :L T0547 146 :AAEMG 3hurA 97 :FIDHD T0547 153 :ITLTIEGLNELE 3hurA 102 :IVITIPSLAWLQ T0547 174 :FKPKPNIGLRVRLH 3hurA 118 :FEGTLKVSLAIDTG T0547 189 :AGV 3hurA 133 :TRI T0547 194 :W 3hurA 138 :D T0547 207 :TSTELIEAVNLLKENKLL 3hurA 139 :KADEISAAKKIIDKNPQL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLG 3hurA 157 :DLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMA T0547 310 :KKDLEPDI 3hurA 212 :HDDPRISF T0547 318 :FIESGRFVAA 3hurA 221 :AIRPGQLISG T0547 328 :NHAVLIAPVLELFSQ 3hurA 248 :RIFSVCSEIADVRFV T0547 343 :EYAENKLILK 3hurA 277 :PEDGYVATLP T0547 353 :KQNPKLIDE 3hurA 288 :GYNDGWLRR T0547 377 :YLHDSIDHLESI 3hurA 304 :INGKRMPIIGRI T0547 391 :LFDLGYVDL 3hurA 316 :TMDQTMVKL T0547 400 :QDRSNAEILTH 3hurA 326 :RKYPIGTRVTL Number of specific fragments extracted= 22 number of extra gaps= 2 total=22362 Will force an alignment to be made, even if fragment is small Number of alignments=1010 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNF 3hurA 5 :IHRPTWVSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQ 3hurA 30 :KAKKVYAVLKADG T0547 90 :YPGFVKNLVKLGKD 3hurA 47 :AIPLAKAFQETASA T0547 106 :YGLEAGSKAELLLAMAYNNEG 3hurA 61 :DALIVSNLDEALELRQADLTL T0547 128 :PIT 3hurA 82 :PIW T0547 133 :GFKDRE 3hurA 87 :GAWDYS T0547 141 :NIGF 3hurA 93 :DLKL T0547 146 :AAEMG 3hurA 97 :FIDHD T0547 153 :ITLTIEGLNELE 3hurA 102 :IVITIPSLAWLQ T0547 174 :FKPKPNIGLRVRLH 3hurA 118 :FEGTLKVSLAIDTG T0547 188 :SAG 3hurA 133 :TRI T0547 206 :LTSTELIEAVNLLKENKLL 3hurA 138 :DKADEISAAKKIIDKNPQL T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLG 3hurA 157 :DLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMA T0547 274 :GL 3hurA 218 :SF T0547 279 :YSQFKNEKSRNY 3hurA 229 :SGVNVSNGELKM T0547 310 :KKDLE 3hurA 242 :PNLHL T0547 327 :ANHAVLIAPVLELFSQ 3hurA 247 :ERIFSVCSEIADVRFV T0547 343 :EYAENKLILK 3hurA 277 :PEDGYVATLP T0547 353 :KQNPKLID 3hurA 288 :GYNDGWLR T0547 379 :HDSIDHLESI 3hurA 306 :GKRMPIIGRI T0547 391 :LFDLGYVDLQ 3hurA 316 :TMDQTMVKLD T0547 401 :DRSNAEILTH 3hurA 327 :KYPIGTRVTL Number of specific fragments extracted= 22 number of extra gaps= 2 total=22384 Will force an alignment to be made, even if fragment is small Number of alignments=1011 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)T130 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)Y605 because last residue in template chain is (3hurA)Y385 T0547 41 :DGYKGPLLL 3hurA 3 :TAIHRPTWV T0547 50 :RFPHLIQKQIENIYGNF 3hurA 13 :VDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQYPG 3hurA 30 :KAKKVYAVLKADGYGL T0547 93 :FVKNLVKLGK 3hurA 50 :LAKAFQETAS T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPI 3hurA 60 :ADALIVSNLDEALELRQADLTLPIW T0547 133 :GFKDRELINIGF 3hurA 87 :GAWDYSDLKLFI T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3hurA 99 :DHDIVITIPSLAWLQNLPDFEGT T0547 178 :PNIGLRV 3hurA 122 :LKVSLAI T0547 187 :HSAGV 3hurA 129 :DTGMT T0547 203 :KF 3hurA 134 :RI T0547 207 :TS 3hurA 138 :DK T0547 209 :TELIEAVNLLKENKLLEQFT 3hurA 141 :DEISAAKKIIDKNPQLDLFS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 3hurA 161 :VYTHFATADEAGEKSKAYFEEQLRRWQELT T0547 260 :KMGA 3hurA 192 :NQGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 3hurA 196 :DPSLFSMANSATCIWHHDDPRI T0547 291 :TLREY 3hurA 218 :SFAAI T0547 296 :ANDVVFILKNIAEQKKD 3hurA 224 :PGQLISGVNVSNGELKM T0547 314 :EPDIFIES 3hurA 241 :PPNLHLER T0547 329 :HAVLIAPVLELFSQE 3hurA 249 :IFSVCSEIADVRFVK T0547 344 :YAE 3hurA 279 :DGY T0547 348 :KLILKK 3hurA 282 :VATLPF T0547 354 :QNPKLIDELYDLYK 3hurA 289 :YNDGWLRRMQKSSV T0547 369 :IKPSNALE 3hurA 303 :IINGKRMP T0547 377 :YLHDSIDHL 3hurA 322 :VKLDRKYPI T0547 393 :DLGY 3hurA 331 :GTRV T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNF 3hurA 335 :TLIGKDGGEQITVEEVANYSHTIVDEIQTTLAPRIKRIYTGDLAEVI T0547 524 :GM 3hurA 382 :GA T0547 604 :G 3hurA 384 :N Number of specific fragments extracted= 28 number of extra gaps= 2 total=22412 Will force an alignment to be made, even if fragment is small Number of alignments=1012 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)Y565 because last residue in template chain is (3hurA)Y385 T0547 22 :CI 3hurA 3 :TA T0547 43 :YKGP 3hurA 5 :IHRP T0547 47 :LLLRFPHLIQKQIENIYGNF 3hurA 10 :WVSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQY 3hurA 30 :KAKKVYAVLKADGY T0547 91 :PGFVKNLVKLG 3hurA 48 :IPLAKAFQETA T0547 102 :K 3hurA 60 :A T0547 106 :YGLEAGSKAELLLAMAYNNE 3hurA 61 :DALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRELINIGF 3hurA 87 :GAWDYSDLKLFI T0547 148 :EMG 3hurA 99 :DHD T0547 153 :ITLTIEGLNELE 3hurA 102 :IVITIPSLAWLQ T0547 174 :FKPKPNIGLRV 3hurA 118 :FEGTLKVSLAI T0547 187 :HSAGV 3hurA 129 :DTGMT T0547 203 :KF 3hurA 134 :RI T0547 207 :TSTELIEAVNLLKENKLLEQFT 3hurA 139 :KADEISAAKKIIDKNPQLDLFS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 3hurA 161 :VYTHFATADEAGEKSKAYFEEQLRRWQELT T0547 260 :KMGA 3hurA 192 :NQGF T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRNY 3hurA 196 :DPSLFSMANSATCIWHHDDPRISFAA T0547 307 :AEQKKD 3hurA 226 :QLISGV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 3hurA 233 :VSNGELKMPPNLHLERIFSVCSEIADVRFVK T0547 344 :YAENKLILKK 3hurA 278 :EDGYVATLPF T0547 354 :QNPKLIDE 3hurA 289 :YNDGWLRR T0547 372 :SNALE 3hurA 297 :MQKSS T0547 377 :YLHDSIDHLE 3hurA 307 :KRMPIIGRIT T0547 389 :LTLFDLGYV 3hurA 317 :MDQTMVKLD T0547 400 :QDRSNAEILTHLITKKA 3hurA 326 :RKYPIGTRVTLIGKDGG T0547 417 :ILLLG 3hurA 344 :QITVE T0547 440 :YLVNF 3hurA 349 :EVANY T0547 474 :RSASIWDITC 3hurA 354 :SHTIVDEIQT T0547 530 :FTHPTEAIISIN 3hurA 364 :TLAPRIKRIYTG T0547 556 :ILDTLEDLD 3hurA 376 :DLAEVIGAN Number of specific fragments extracted= 31 number of extra gaps= 2 total=22443 Will force an alignment to be made, even if fragment is small Number of alignments=1013 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)I551 because last residue in template chain is (3hurA)Y385 T0547 41 :DGYKGPL 3hurA 3 :TAIHRPT T0547 48 :LLRFPHLIQKQIENIYGNF 3hurA 11 :VSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQYPG 3hurA 30 :KAKKVYAVLKADGYGL T0547 93 :FVKNLVKL 3hurA 50 :LAKAFQET T0547 101 :GK 3hurA 59 :SA T0547 106 :YGLEAGSKAELLLAMAYNNE 3hurA 61 :DALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRELINIGF 3hurA 87 :GAWDYSDLKLFI T0547 150 :GHNITLTIEGLNELEAI 3hurA 99 :DHDIVITIPSLAWLQNL T0547 171 :KE 3hurA 116 :PD T0547 174 :FKPKPNIGLRV 3hurA 118 :FEGTLKVSLAI T0547 187 :HSAGV 3hurA 129 :DTGMT T0547 203 :KF 3hurA 134 :RI T0547 207 :TSTELIEAVNLLKENKLLEQFT 3hurA 139 :KADEISAAKKIIDKNPQLDLFS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRK 3hurA 161 :VYTHFATADEAGEKSKAYFEEQLRRWQELTI T0547 261 :MGA 3hurA 193 :QGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 3hurA 196 :DPSLFSMANSATCIWHHDDPRI T0547 296 :ANDV 3hurA 219 :FAAI T0547 300 :VFIL 3hurA 225 :GQLI T0547 304 :KNI 3hurA 230 :GVN T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 3hurA 233 :VSNGELKMPPNLHLERIFSVCSEIADVRFVK T0547 344 :YAENKLILKK 3hurA 278 :EDGYVATLPF T0547 354 :QNPKLIDELY 3hurA 289 :YNDGWLRRMQ T0547 374 :ALE 3hurA 299 :KSS T0547 377 :YLHDSIDHLE 3hurA 307 :KRMPIIGRIT T0547 389 :LTLFDLGY 3hurA 317 :MDQTMVKL T0547 399 :LQDRSNAEILTHLITKKA 3hurA 325 :DRKYPIGTRVTLIGKDGG T0547 417 :ILLLG 3hurA 344 :QITVE T0547 431 :AIQDEVQER 3hurA 349 :EVANYSHTI T0547 449 :SMPDFWGLEQNFP 3hurA 358 :VDEIQTTLAPRIK T0547 538 :ISINEKG 3hurA 371 :RIYTGDL T0547 545 :YEVEGI 3hurA 379 :EVIGAN Number of specific fragments extracted= 32 number of extra gaps= 2 total=22475 Will force an alignment to be made, even if fragment is small Number of alignments=1014 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)V21 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)Y565 because last residue in template chain is (3hurA)Y385 T0547 22 :CI 3hurA 3 :TA T0547 43 :YKGPL 3hurA 5 :IHRPT T0547 48 :LLRFPHLIQKQIENIYGNF 3hurA 11 :VSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQ 3hurA 30 :KAKKVYAVLKADG T0547 90 :YPGFVKNLVKLGKD 3hurA 47 :AIPLAKAFQETASA T0547 106 :YGLEAGSKAELLLAMAYNNE 3hurA 61 :DALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRELINIGF 3hurA 87 :GAWDYSDLKLFI T0547 148 :EMGH 3hurA 99 :DHDI T0547 154 :TLTIEGLNELEAIID 3hurA 103 :VITIPSLAWLQNLPD T0547 174 :FKPKPNIGLRV 3hurA 118 :FEGTLKVSLAI T0547 187 :HSAGV 3hurA 129 :DTGMT T0547 203 :KF 3hurA 134 :RI T0547 207 :TSTELIEAVNLLKENKLLEQFT 3hurA 139 :KADEISAAKKIIDKNPQLDLFS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 3hurA 161 :VYTHFATADEAGEKSKAYFEEQLRRWQELT T0547 260 :KMGA 3hurA 192 :NQGF T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRNY 3hurA 196 :DPSLFSMANSATCIWHHDDPRISFAA T0547 308 :EQKKD 3hurA 227 :LISGV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 3hurA 233 :VSNGELKMPPNLHLERIFSVCSEIADVRFVK T0547 344 :YAENKLILKK 3hurA 278 :EDGYVATLPF T0547 354 :QNPKLIDEL 3hurA 289 :YNDGWLRRM T0547 373 :NALE 3hurA 298 :QKSS T0547 377 :YLHDSIDHLE 3hurA 307 :KRMPIIGRIT T0547 389 :LTLFDLGY 3hurA 317 :MDQTMVKL T0547 399 :LQDRSNAEILTHLITKKA 3hurA 325 :DRKYPIGTRVTLIGKDGG T0547 425 :NPADLLAIQDEVQERYLVNFSLFQ 3hurA 343 :EQITVEEVANYSHTIVDEIQTTLA T0547 533 :PTEAIISINEK 3hurA 367 :PRIKRIYTGDL T0547 558 :DTLEDLD 3hurA 378 :AEVIGAN Number of specific fragments extracted= 28 number of extra gaps= 2 total=22503 Will force an alignment to be made, even if fragment is small Number of alignments=1015 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)N585 because last residue in template chain is (3hurA)Y385 T0547 41 :DGYKGPL 3hurA 3 :TAIHRPT T0547 48 :LLRFPHLIQKQIENIYGNF 3hurA 11 :VSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKV 3hurA 30 :KAKKVYAVLKA T0547 88 :NQYPGFVKNLVKLGK 3hurA 45 :LGAIPLAKAFQETAS T0547 105 :NYGLEAGSKAELLLAMAYNNE 3hurA 60 :ADALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRELINIGF 3hurA 87 :GAWDYSDLKLFI T0547 148 :EMG 3hurA 99 :DHD T0547 153 :ITLTIEGLNELE 3hurA 102 :IVITIPSLAWLQ T0547 174 :FKPKPNIGLRV 3hurA 118 :FEGTLKVSLAI T0547 187 :HSAGV 3hurA 129 :DTGMT T0547 203 :KF 3hurA 134 :RI T0547 207 :TSTELIEAVNLLKENKLLEQFT 3hurA 139 :KADEISAAKKIIDKNPQLDLFS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRK 3hurA 161 :VYTHFATADEAGEKSKAYFEEQLRRWQELTI T0547 261 :MGA 3hurA 193 :QGF T0547 265 :NLKAINLGGGLAV 3hurA 196 :DPSLFSMANSATC T0547 314 :EPDIF 3hurA 218 :SFAAI T0547 320 :ESGRFVAAN 3hurA 223 :RPGQLISGV T0547 329 :HAVLIAPVLELFSQE 3hurA 249 :IFSVCSEIADVRFVK T0547 344 :YAENKLILKK 3hurA 278 :EDGYVATLPF T0547 354 :QNPKLIDEL 3hurA 289 :YNDGWLRRM T0547 374 :AL 3hurA 299 :KS T0547 377 :YLHDSIDHLES 3hurA 307 :KRMPIIGRITM T0547 390 :TLFDLGY 3hurA 318 :DQTMVKL T0547 399 :LQDRSNAEILTHLITKKA 3hurA 325 :DRKYPIGTRVTLIGKDGG T0547 425 :NPADLLA 3hurA 343 :EQITVEE T0547 489 :ISYSKD 3hurA 350 :VANYSH T0547 495 :KPLFLHDVD 3hurA 362 :QTTLAPRIK T0547 549 :GIIEA 3hurA 371 :RIYTG T0547 576 :ERISNSKLV 3hurA 376 :DLAEVIGAN Number of specific fragments extracted= 30 number of extra gaps= 2 total=22533 Will force an alignment to be made, even if fragment is small Number of alignments=1016 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)Y565 because last residue in template chain is (3hurA)Y385 T0547 41 :DGYKGP 3hurA 3 :TAIHRP T0547 47 :LLLRFPHLIQKQIENIYGNF 3hurA 10 :WVSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQY 3hurA 30 :KAKKVYAVLKADGY T0547 91 :PGFVKNLVKL 3hurA 48 :IPLAKAFQET T0547 101 :GK 3hurA 59 :SA T0547 106 :YGLEAGSKAELLLAMAYNNE 3hurA 61 :DALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRELINIGF 3hurA 87 :GAWDYSDLKLFI T0547 148 :EMG 3hurA 99 :DHD T0547 153 :ITLTIEGLNELE 3hurA 102 :IVITIPSLAWLQ T0547 174 :FKPKPNIGLRV 3hurA 118 :FEGTLKVSLAI T0547 187 :HSAGV 3hurA 129 :DTGMT T0547 203 :KF 3hurA 134 :RI T0547 207 :TSTELIEAVNLLKENKLLEQFT 3hurA 139 :KADEISAAKKIIDKNPQLDLFS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 3hurA 161 :VYTHFATADEAGEKSKAYFEEQLRRWQELT T0547 260 :KMGA 3hurA 192 :NQGF T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRNY 3hurA 196 :DPSLFSMANSATCIWHHDDPRISFAA T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 3hurA 229 :SGVNVSNGELKMPPNLHLERIFSVCSEIADVRFVK T0547 344 :YAENKLILKK 3hurA 278 :EDGYVATLPF T0547 354 :QNPKLIDE 3hurA 289 :YNDGWLRR T0547 377 :YLHDSIDHLE 3hurA 307 :KRMPIIGRIT T0547 389 :LTLFDLGY 3hurA 317 :MDQTMVKL T0547 399 :LQDRSNAEILTHLITKKA 3hurA 325 :DRKYPIGTRVTLIGKDGG T0547 425 :NPADLLAIQDEVQERYLVNFSLFQS 3hurA 343 :EQITVEEVANYSHTIVDEIQTTLAP T0547 459 :NFPIM 3hurA 368 :RIKRI T0547 475 :S 3hurA 373 :Y T0547 479 :W 3hurA 374 :T T0547 555 :SILDTLEDLD 3hurA 375 :GDLAEVIGAN Number of specific fragments extracted= 28 number of extra gaps= 2 total=22561 Will force an alignment to be made, even if fragment is small Number of alignments=1017 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)T130 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 43 :YKGPLLL 3hurA 5 :IHRPTWV T0547 50 :RFPHLIQKQIENIYGNF 3hurA 13 :VDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQYPG 3hurA 30 :KAKKVYAVLKADGYGL T0547 93 :FVKNLVKLGK 3hurA 50 :LAKAFQETAS T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPI 3hurA 60 :ADALIVSNLDEALELRQADLTLPIW T0547 133 :GFKDRELINIGF 3hurA 87 :GAWDYSDLKLFI T0547 150 :GHNITLTIEGLNELEAIIDIAKE 3hurA 99 :DHDIVITIPSLAWLQNLPDFEGT T0547 178 :PNIGLRV 3hurA 122 :LKVSLAI T0547 187 :HSAGV 3hurA 129 :DTGMT T0547 203 :KF 3hurA 134 :RI T0547 207 :TS 3hurA 138 :DK T0547 209 :TELIEAVNLLKENKLLEQFT 3hurA 141 :DEISAAKKIIDKNPQLDLFS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 3hurA 161 :VYTHFATADEAGEKSKAYFEEQLRRWQELT T0547 260 :KMGA 3hurA 192 :NQGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 3hurA 196 :DPSLFSMANSATCIWHHDDPRI T0547 291 :TLREY 3hurA 218 :SFAAI T0547 296 :ANDVVFILKNIAEQKKD 3hurA 224 :PGQLISGVNVSNGELKM T0547 314 :EPDIFIES 3hurA 241 :PPNLHLER T0547 329 :HAVLIAPVLELFSQE 3hurA 249 :IFSVCSEIADVRFVK T0547 348 :KLILKK 3hurA 282 :VATLPF T0547 354 :QNPKLIDELYDLYKS 3hurA 289 :YNDGWLRRMQKSSVI T0547 370 :KPSNALE 3hurA 304 :INGKRMP T0547 377 :YLHDSIDHLESILT 3hurA 322 :VKLDRKYPIGTRVT T0547 399 :LQDRSNAEILTHLITKKAILLL 3hurA 336 :LIGKDGGEQITVEEVANYSHTI Number of specific fragments extracted= 24 number of extra gaps= 2 total=22585 Will force an alignment to be made, even if fragment is small Number of alignments=1018 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 43 :YKGP 3hurA 5 :IHRP T0547 47 :LLLRFPHLIQKQIENIYGNF 3hurA 10 :WVSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQY 3hurA 30 :KAKKVYAVLKADGY T0547 91 :PGFVKNLVKLG 3hurA 48 :IPLAKAFQETA T0547 102 :K 3hurA 60 :A T0547 106 :YGLEAGSKAELLLAMAYNNE 3hurA 61 :DALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRELINIGF 3hurA 87 :GAWDYSDLKLFI T0547 148 :EMG 3hurA 99 :DHD T0547 153 :ITLTIEGLNELE 3hurA 102 :IVITIPSLAWLQ T0547 174 :FKPKPNIGLRV 3hurA 118 :FEGTLKVSLAI T0547 187 :HSAGV 3hurA 129 :DTGMT T0547 203 :KF 3hurA 134 :RI T0547 207 :TSTELIEAVNLLKENKLLEQFT 3hurA 139 :KADEISAAKKIIDKNPQLDLFS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 3hurA 161 :VYTHFATADEAGEKSKAYFEEQLRRWQELT T0547 260 :KMGA 3hurA 192 :NQGF T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRNY 3hurA 196 :DPSLFSMANSATCIWHHDDPRISFAA T0547 307 :AEQKKD 3hurA 226 :QLISGV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 3hurA 233 :VSNGELKMPPNLHLERIFSVCSEIADVRFVK T0547 344 :YAENKLILKK 3hurA 278 :EDGYVATLPF T0547 354 :QNPKLIDE 3hurA 289 :YNDGWLRR T0547 372 :SNALE 3hurA 297 :MQKSS T0547 377 :YLHDSIDHLE 3hurA 307 :KRMPIIGRIT T0547 389 :LTLFDLGYV 3hurA 317 :MDQTMVKLD T0547 400 :QDRSNAEILTHLITKKA 3hurA 326 :RKYPIGTRVTLIGKDGG T0547 417 :ILLLG 3hurA 344 :QITVE T0547 440 :YLVNF 3hurA 349 :EVANY T0547 474 :RSASIWDI 3hurA 354 :SHTIVDEI Number of specific fragments extracted= 28 number of extra gaps= 2 total=22613 Will force an alignment to be made, even if fragment is small Number of alignments=1019 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 41 :DGYKGPL 3hurA 3 :TAIHRPT T0547 48 :LLRFPHLIQKQIENIYGNF 3hurA 11 :VSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQYPG 3hurA 30 :KAKKVYAVLKADGYGL T0547 93 :FVKNLVKL 3hurA 50 :LAKAFQET T0547 101 :GK 3hurA 59 :SA T0547 106 :YGLEAGSKAELLLAMAYNNE 3hurA 61 :DALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRELINIGF 3hurA 87 :GAWDYSDLKLFI T0547 150 :GHNITLTIEGLNELEAI 3hurA 99 :DHDIVITIPSLAWLQNL T0547 171 :KE 3hurA 116 :PD T0547 174 :FKPKPNIGLRV 3hurA 118 :FEGTLKVSLAI T0547 187 :HSAGV 3hurA 129 :DTGMT T0547 203 :KF 3hurA 134 :RI T0547 207 :TSTELIEAVNLLKENKLLEQFT 3hurA 139 :KADEISAAKKIIDKNPQLDLFS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRK 3hurA 161 :VYTHFATADEAGEKSKAYFEEQLRRWQELTI T0547 261 :MGA 3hurA 193 :QGF T0547 265 :NLKAINLGGGLAVEYSQFKNEK 3hurA 196 :DPSLFSMANSATCIWHHDDPRI T0547 296 :ANDV 3hurA 219 :FAAI T0547 300 :VFIL 3hurA 225 :GQLI T0547 304 :KNI 3hurA 230 :GVN T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 3hurA 233 :VSNGELKMPPNLHLERIFSVCSEIADVRFVK T0547 344 :YAENKLILKK 3hurA 278 :EDGYVATLPF T0547 354 :QNPKLIDELY 3hurA 289 :YNDGWLRRMQ T0547 374 :ALE 3hurA 299 :KSS T0547 377 :YLHDSIDHLE 3hurA 307 :KRMPIIGRIT T0547 389 :LTLFDLGY 3hurA 317 :MDQTMVKL T0547 399 :LQDRSNAEILTHLITKKA 3hurA 325 :DRKYPIGTRVTLIGKDGG T0547 417 :ILLL 3hurA 344 :QITV Number of specific fragments extracted= 28 number of extra gaps= 2 total=22641 Will force an alignment to be made, even if fragment is small Number of alignments=1020 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)Y565 because last residue in template chain is (3hurA)Y385 T0547 43 :YKGPL 3hurA 5 :IHRPT T0547 48 :LLRFPHLIQKQIENIYGNF 3hurA 11 :VSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQ 3hurA 30 :KAKKVYAVLKADG T0547 90 :YPGFVKNLVKLGKD 3hurA 47 :AIPLAKAFQETASA T0547 106 :YGLEAGSKAELLLAMAYNNE 3hurA 61 :DALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRELINIGF 3hurA 87 :GAWDYSDLKLFI T0547 148 :EMGH 3hurA 99 :DHDI T0547 154 :TLTIEGLNELEAIID 3hurA 103 :VITIPSLAWLQNLPD T0547 174 :FKPKPNIGLRV 3hurA 118 :FEGTLKVSLAI T0547 187 :HSAGV 3hurA 129 :DTGMT T0547 203 :KF 3hurA 134 :RI T0547 207 :TSTELIEAVNLLKENKLLEQFT 3hurA 139 :KADEISAAKKIIDKNPQLDLFS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 3hurA 161 :VYTHFATADEAGEKSKAYFEEQLRRWQELT T0547 260 :KMGA 3hurA 192 :NQGF T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRNY 3hurA 196 :DPSLFSMANSATCIWHHDDPRISFAA T0547 308 :EQKKD 3hurA 227 :LISGV T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQE 3hurA 233 :VSNGELKMPPNLHLERIFSVCSEIADVRFVK T0547 344 :YAENKLILKK 3hurA 278 :EDGYVATLPF T0547 354 :QNPKLIDEL 3hurA 289 :YNDGWLRRM T0547 373 :NALE 3hurA 298 :QKSS T0547 377 :YLHDSIDHLE 3hurA 307 :KRMPIIGRIT T0547 389 :LTLFDLGY 3hurA 317 :MDQTMVKL T0547 399 :LQDRSNAEILTHLITKKA 3hurA 325 :DRKYPIGTRVTLIGKDGG T0547 425 :NPADLLAIQDEVQERYLVNFSLFQ 3hurA 343 :EQITVEEVANYSHTIVDEIQTTLA T0547 533 :PTEAIISINEK 3hurA 367 :PRIKRIYTGDL T0547 558 :DTLEDLD 3hurA 378 :AEVIGAN Number of specific fragments extracted= 27 number of extra gaps= 2 total=22668 Will force an alignment to be made, even if fragment is small Number of alignments=1021 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 42 :GYKGPL 3hurA 4 :AIHRPT T0547 48 :LLRFPHLIQKQIENIYGNF 3hurA 11 :VSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKV 3hurA 30 :KAKKVYAVLKA T0547 88 :NQYPGFVKNLVKLGK 3hurA 45 :LGAIPLAKAFQETAS T0547 105 :NYGLEAGSKAELLLAMAYNNE 3hurA 60 :ADALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRELINIGF 3hurA 87 :GAWDYSDLKLFI T0547 148 :EMG 3hurA 99 :DHD T0547 153 :ITLTIEGLNELE 3hurA 102 :IVITIPSLAWLQ T0547 174 :FKPKPNIGLRV 3hurA 118 :FEGTLKVSLAI T0547 187 :HSAGV 3hurA 129 :DTGMT T0547 203 :KF 3hurA 134 :RI T0547 207 :TSTELIEAVNLLKENKLLEQFT 3hurA 139 :KADEISAAKKIIDKNPQLDLFS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRK 3hurA 161 :VYTHFATADEAGEKSKAYFEEQLRRWQELTI T0547 261 :MGA 3hurA 193 :QGF T0547 265 :NLKAINLGGGLAV 3hurA 196 :DPSLFSMANSATC T0547 314 :EPDIF 3hurA 218 :SFAAI T0547 320 :ESGRFVAAN 3hurA 223 :RPGQLISGV T0547 329 :HAVLIAPVLELFSQE 3hurA 249 :IFSVCSEIADVRFVK T0547 344 :YAENKLILKK 3hurA 278 :EDGYVATLPF T0547 354 :QNPKLIDEL 3hurA 289 :YNDGWLRRM T0547 374 :AL 3hurA 299 :KS T0547 377 :YLHDSIDHLES 3hurA 307 :KRMPIIGRITM T0547 390 :TLFDLGY 3hurA 318 :DQTMVKL T0547 399 :LQDRSNAEILTHLITKKA 3hurA 325 :DRKYPIGTRVTLIGKDGG Number of specific fragments extracted= 25 number of extra gaps= 2 total=22693 Will force an alignment to be made, even if fragment is small Number of alignments=1022 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 42 :GYKGP 3hurA 4 :AIHRP T0547 47 :LLLRFPHLIQKQIENIYGNF 3hurA 10 :WVSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKVNQY 3hurA 30 :KAKKVYAVLKADGY T0547 91 :PGFVKNLVKL 3hurA 48 :IPLAKAFQET T0547 101 :GK 3hurA 59 :SA T0547 106 :YGLEAGSKAELLLAMAYNNE 3hurA 61 :DALIVSNLDEALELRQADLT T0547 127 :APIT 3hurA 81 :LPIW T0547 133 :GFKDRELINIGF 3hurA 87 :GAWDYSDLKLFI T0547 148 :EMG 3hurA 99 :DHD T0547 153 :ITLTIEGLNELE 3hurA 102 :IVITIPSLAWLQ T0547 174 :FKPKPNIGLRV 3hurA 118 :FEGTLKVSLAI T0547 187 :HSAGV 3hurA 129 :DTGMT T0547 203 :KF 3hurA 134 :RI T0547 207 :TSTELIEAVNLLKENKLLEQFT 3hurA 139 :KADEISAAKKIIDKNPQLDLFS T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELR 3hurA 161 :VYTHFATADEAGEKSKAYFEEQLRRWQELT T0547 260 :KMGA 3hurA 192 :NQGF T0547 265 :NLKAINLGGGLAVEYSQFKNEKSRNY 3hurA 196 :DPSLFSMANSATCIWHHDDPRISFAA T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE 3hurA 229 :SGVNVSNGELKMPPNLHLERIFSVCSEIADVRFVK T0547 344 :YAENKLILKK 3hurA 278 :EDGYVATLPF T0547 354 :QNPKLIDE 3hurA 289 :YNDGWLRR T0547 377 :YLHDSIDHLE 3hurA 307 :KRMPIIGRIT T0547 389 :LTLFDLGY 3hurA 317 :MDQTMVKL T0547 399 :LQDRSNAEILTHLITKKA 3hurA 325 :DRKYPIGTRVTLIGKDGG T0547 425 :NPADLLAIQDEVQERYLVNFSLFQ 3hurA 343 :EQITVEEVANYSHTIVDEIQTTLA Number of specific fragments extracted= 24 number of extra gaps= 2 total=22717 Will force an alignment to be made, even if fragment is small Number of alignments=1023 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)F599 because last residue in template chain is (3hurA)Y385 T0547 41 :DGYKGPLLL 3hurA 3 :TAIHRPTWV T0547 50 :RFPHLIQKQIENIYGNFNK 3hurA 13 :VDLDAAAHNLQEIREWTKA T0547 80 :NAVY 3hurA 32 :KKVY T0547 95 :KNLVKLG 3hurA 36 :AVLKADG T0547 106 :YGLEA 3hurA 43 :YGLGA T0547 114 :AELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 3hurA 48 :IPLAKAFQETASADALIVSNLDEALELRQADLTLPIW T0547 156 :TIEGLNELEAIIDIAKE 3hurA 87 :GAWDYSDLKLFIDHDIV T0547 174 :FKPKPNIGLRVRLHSAGVGI 3hurA 104 :ITIPSLAWLQNLPDFEGTLK T0547 194 :WAKSGGINSKF 3hurA 125 :SLAIDTGMTRI T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLG 3hurA 138 :DKADEISAAKKIIDKNPQLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMA T0547 283 :KNEKSR 3hurA 214 :DPRISF T0547 293 :REYANDVVFILKNIAEQKKDLEPDIFIES 3hurA 220 :AAIRPGQLISGVNVSNGELKMPPNLHLER T0547 326 :AANHAVLIAPVLELFSQ 3hurA 249 :IFSVCSEIADVRFVKKD T0547 343 :EYAENKLILKKQNPKLID 3hurA 278 :EDGYVATLPFGYNDGWLR T0547 428 :DLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPI 3hurA 296 :RMQKSSVIINGKRMPIIGRITMDQTMVKLDRKYPI T0547 524 :G 3hurA 331 :G T0547 534 :TEAIISINEKG 3hurA 332 :TRVTLIGKDGG T0547 552 :EAQSILDTLEDLDYDIHAIMDILNERISNSKLVNDKQK 3hurA 343 :EQITVEEVANYSHTIVDEIQTTLAPRIKRIYTGDLAEV T0547 595 :ELYL 3hurA 381 :IGAN Number of specific fragments extracted= 19 number of extra gaps= 2 total=22736 Will force an alignment to be made, even if fragment is small Number of alignments=1024 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)K20 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)T130 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)Q588 because last residue in template chain is (3hurA)Y385 T0547 21 :VCINYEKK 3hurA 3 :TAIHRPTW T0547 48 :LLRFPHLIQKQIENIYGNF 3hurA 11 :VSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKV 3hurA 30 :KAKKVYAVLKA T0547 88 :NQYPGFVKNLVKLGKD 3hurA 45 :LGAIPLAKAFQETASA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPI 3hurA 61 :DALIVSNLDEALELRQADLTLPIW T0547 132 :NGFKDRE 3hurA 87 :GAWDYSD T0547 141 :NIGFIAAEM 3hurA 94 :LKLFIDHDI T0547 154 :TLTIEGLNELE 3hurA 103 :VITIPSLAWLQ T0547 174 :FKPKPNIGLRVRLHSAGV 3hurA 118 :FEGTLKVSLAIDTGMTRI T0547 208 :S 3hurA 138 :D T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHLGSQ 3hurA 140 :ADEISAAKKIIDKNPQLDLFSVYTHFATA T0547 240 :EIHP 3hurA 169 :DEAG T0547 245 :KKALNEAGNIYTELRKMG 3hurA 173 :EKSKAYFEEQLRRWQELT T0547 274 :GLAVEYSQF 3hurA 192 :NQGFDPSLF T0547 283 :KNEK 3hurA 239 :KMPP T0547 324 :FVAANHAVLIAPVLELFSQ 3hurA 244 :LHLERIFSVCSEIADVRFV T0547 343 :EYAENKLILKKQN 3hurA 278 :EDGYVATLPFGYN T0547 356 :PKLI 3hurA 292 :GWLR T0547 364 :DLYKSIKPSNALEYLH 3hurA 296 :RMQKSSVIINGKRMPI T0547 385 :LES 3hurA 312 :IGR T0547 390 :TLFDLGYVDLQDRSNAEILTHL 3hurA 315 :ITMDQTMVKLDRKYPIGTRVTL T0547 500 :HDV 3hurA 337 :IGK T0547 529 :LFTHPTEAIISINEKGYEVEGIIEAQSIL 3hurA 340 :DGGEQITVEEVANYSHTIVDEIQTTLAPR T0547 563 :LDYDIHAIM 3hurA 372 :IYTGDLAEV T0547 584 :VNDK 3hurA 381 :IGAN Number of specific fragments extracted= 25 number of extra gaps= 2 total=22761 Will force an alignment to be made, even if fragment is small Number of alignments=1025 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)D40 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)T130 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)I551 because last residue in template chain is (3hurA)Y385 T0547 41 :DGYKGPLLL 3hurA 3 :TAIHRPTWV T0547 50 :RFPHLIQKQIENIYGNFN 3hurA 13 :VDLDAAAHNLQEIREWTK T0547 78 :GFNAVYPLKV 3hurA 31 :AKKVYAVLKA T0547 88 :NQYPGFVKNLVKLG 3hurA 45 :LGAIPLAKAFQETA T0547 104 :YNYGLEAGSKAELLLAMAYNNEGAPI 3hurA 59 :SADALIVSNLDEALELRQADLTLPIW T0547 132 :NGFKDR 3hurA 87 :GAWDYS T0547 140 :INIGFIAAEM 3hurA 93 :DLKLFIDHDI T0547 154 :TLTIEGLNELEAI 3hurA 103 :VITIPSLAWLQNL T0547 171 :KE 3hurA 116 :PD T0547 174 :FKPKPNIGLRVRLHS 3hurA 118 :FEGTLKVSLAIDTGM T0547 202 :SKF 3hurA 133 :TRI T0547 207 :TS 3hurA 138 :DK T0547 209 :TELIEAVNLLKENK 3hurA 141 :DEISAAKKIIDKNP T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRK 3hurA 155 :QLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTI T0547 263 :AKNLK 3hurA 192 :NQGFD T0547 305 :NIAEQKKDLEP 3hurA 236 :GELKMPPNLHL T0547 328 :NHAVLIAPVLELFSQEYAEN 3hurA 248 :RIFSVCSEIADVRFVKKDQS T0547 361 :ELYDLYKSIKPS 3hurA 268 :LSYGASERMPED T0547 373 :NALEYLHDSIDHLESI 3hurA 300 :SSVIINGKRMPIIGRI T0547 391 :LFDLGYVDLQDRSNAEILTHLIT 3hurA 316 :TMDQTMVKLDRKYPIGTRVTLIG T0547 414 :KKAILLLGD 3hurA 340 :DGGEQITVE T0547 499 :LHDVDVEKENYFL 3hurA 349 :EVANYSHTIVDEI T0547 529 :LFTHPTEAIISINEKG 3hurA 362 :QTTLAPRIKRIYTGDL T0547 545 :YEVEGI 3hurA 379 :EVIGAN Number of specific fragments extracted= 24 number of extra gaps= 2 total=22785 Will force an alignment to be made, even if fragment is small Number of alignments=1026 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)C22 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)T130 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)Y565 because last residue in template chain is (3hurA)Y385 T0547 23 :IN 3hurA 3 :TA T0547 31 :IID 3hurA 5 :IHR T0547 45 :GPLLLRFPHLIQKQIENIYGNFN 3hurA 8 :PTWVSVDLDAAAHNLQEIREWTK T0547 78 :GFNAVYPLKV 3hurA 31 :AKKVYAVLKA T0547 88 :NQYPGFVKNLVKLGKD 3hurA 45 :LGAIPLAKAFQETASA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPI 3hurA 61 :DALIVSNLDEALELRQADLTLPIW T0547 132 :NGFKDR 3hurA 87 :GAWDYS T0547 140 :INIGFIAAEM 3hurA 93 :DLKLFIDHDI T0547 154 :TLTIEGLNELEAIID 3hurA 103 :VITIPSLAWLQNLPD T0547 174 :FKPKPNIGLRVRLHSAGV 3hurA 118 :FEGTLKVSLAIDTGMTRI T0547 206 :LTSTELIEAVNLLKENK 3hurA 138 :DKADEISAAKKIIDKNP T0547 224 :LEQFTMIHFHLGS 3hurA 155 :QLDLFSVYTHFAT T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 3hurA 169 :DEAGEKSKAYFEEQLRRWQELTINQ T0547 263 :AKNL 3hurA 194 :GFDP T0547 280 :SQF 3hurA 198 :SLF T0547 283 :KNEKSR 3hurA 239 :KMPPNL T0547 325 :VAANHAVLIAPVLELFSQEY 3hurA 245 :HLERIFSVCSEIADVRFVKK T0547 345 :AENKLIL 3hurA 272 :ASERMPE T0547 394 :LGYVDLQDR 3hurA 287 :FGYNDGWLR T0547 403 :SNAEIL 3hurA 297 :MQKSSV T0547 436 :VQERYLVNFSLFQSMPDF 3hurA 303 :IINGKRMPIIGRITMDQT T0547 462 :IMPLDRLDEEPTRSASIWD 3hurA 321 :MVKLDRKYPIGTRVTLIGK T0547 515 :LVG 3hurA 340 :DGG T0547 531 :THPTEAIISINEKGYEVEGIIEAQ 3hurA 343 :EQITVEEVANYSHTIVDEIQTTLA T0547 555 :SILDTLEDLD 3hurA 375 :GDLAEVIGAN Number of specific fragments extracted= 25 number of extra gaps= 2 total=22810 Will force an alignment to be made, even if fragment is small Number of alignments=1027 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)K28 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)T130 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 29 :P 3hurA 3 :T T0547 42 :GYKGP 3hurA 4 :AIHRP T0547 47 :LLLRFPHLIQKQIENIYGNFN 3hurA 10 :WVSVDLDAAAHNLQEIREWTK T0547 78 :GFNAVYPLKV 3hurA 31 :AKKVYAVLKA T0547 88 :NQYPGFVKNLVKLG 3hurA 45 :LGAIPLAKAFQETA T0547 104 :YNYGLEAGSKAELLLAMAYNNEGAPI 3hurA 59 :SADALIVSNLDEALELRQADLTLPIW T0547 132 :NGFKDRE 3hurA 87 :GAWDYSD T0547 141 :NIGFIAAEM 3hurA 94 :LKLFIDHDI T0547 154 :TLTIEGLNELE 3hurA 103 :VITIPSLAWLQ T0547 174 :FKPKPNIGLRVRLHSAGV 3hurA 118 :FEGTLKVSLAIDTGMTRI T0547 206 :LTSTELIEAVNLLKENK 3hurA 138 :DKADEISAAKKIIDKNP T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKN 3hurA 155 :QLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFD T0547 287 :SR 3hurA 239 :KM T0547 310 :KKDLEPD 3hurA 241 :PPNLHLE T0547 328 :NHAVLIAPVLELFSQEYAEN 3hurA 248 :RIFSVCSEIADVRFVKKDQS T0547 350 :ILKKQN 3hurA 268 :LSYGAS T0547 367 :KSIKPS 3hurA 274 :ERMPED T0547 373 :NALEYLHD 3hurA 292 :GWLRRMQK T0547 381 :SIDHLES 3hurA 301 :SVIINGK T0547 391 :LFDLGYVDLQDRSNAEI 3hurA 316 :TMDQTMVKLDRKYPIGT T0547 535 :EAIISINEKG 3hurA 333 :RVTLIGKDGG T0547 545 :YEVEGIIEAQSI 3hurA 346 :TVEEVANYSHTI T0547 605 :YLKSIG 3hurA 358 :VDEIQT Number of specific fragments extracted= 23 number of extra gaps= 2 total=22833 Will force an alignment to be made, even if fragment is small Number of alignments=1028 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)K28 because first residue in template chain is (3hurA)L2 Warning: unaligning (T0547)T130 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 Warning: unaligning (T0547)Y565 because last residue in template chain is (3hurA)Y385 T0547 29 :PAI 3hurA 3 :TAI T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 3hurA 6 :HRPTWVSVDLDAAAHNLQEIREWTK T0547 78 :GFNAVYPLKV 3hurA 31 :AKKVYAVLKA T0547 88 :NQYPGFVKNLVKLGKD 3hurA 45 :LGAIPLAKAFQETASA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPI 3hurA 61 :DALIVSNLDEALELRQADLTLPIW T0547 132 :NGFKDRELINI 3hurA 87 :GAWDYSDLKLF T0547 145 :IAAEM 3hurA 98 :IDHDI T0547 154 :TLTIEGLNELE 3hurA 103 :VITIPSLAWLQ T0547 174 :FKPKPNIGLRVRLHS 3hurA 118 :FEGTLKVSLAIDTGM T0547 202 :SKF 3hurA 133 :TRI T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHLGS 3hurA 138 :DKADEISAAKKIIDKNPQLDLFSVYTHFAT T0547 237 :QITEIHPLKKALNEAGNIYTEL 3hurA 169 :DEAGEKSKAYFEEQLRRWQELT T0547 262 :G 3hurA 191 :I T0547 274 :GLAVEYSQF 3hurA 192 :NQGFDPSLF T0547 283 :KNEKSR 3hurA 239 :KMPPNL T0547 311 :KD 3hurA 245 :HL T0547 327 :ANHAVLIAPVLELFSQ 3hurA 247 :ERIFSVCSEIADVRFV T0547 398 :DLQDRSNAEILTHLITK 3hurA 271 :GASERMPEDGYVATLPF T0547 449 :SMPD 3hurA 288 :GYND T0547 467 :RLDEEPTRSASIW 3hurA 292 :GWLRRMQKSSVII T0547 486 :DGEISYSKDKPL 3hurA 305 :NGKRMPIIGRIT T0547 498 :FLHDVDVEKENYFLG 3hurA 324 :LDRKYPIGTRVTLIG T0547 528 :NLFTHPTEAIISINEKGYEVEGIIEAQ 3hurA 339 :KDGGEQITVEEVANYSHTIVDEIQTTL T0547 555 :SILDTLEDLD 3hurA 375 :GDLAEVIGAN Number of specific fragments extracted= 24 number of extra gaps= 2 total=22857 Will force an alignment to be made, even if fragment is small Number of alignments=1029 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 139 :LINIGFIAAEM 3hurA 92 :SDLKLFIDHDI T0547 154 :TLTIEGLNELEAIIDIAKE 3hurA 103 :VITIPSLAWLQNLPDFEGT T0547 178 :PNIGLRVRLHS 3hurA 122 :LKVSLAIDTGM T0547 202 :SKF 3hurA 133 :TRI T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELR 3hurA 138 :DKADEISAAKKIIDKNPQLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELT Number of specific fragments extracted= 5 number of extra gaps= 1 total=22862 Will force an alignment to be made, even if fragment is small Number of alignments=1030 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)T130 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 48 :LLRFPHLIQKQIENIYGNF 3hurA 11 :VSVDLDAAAHNLQEIREWT T0547 77 :GGFNAVYPLKV 3hurA 30 :KAKKVYAVLKA T0547 88 :NQYPGFVKNLVKLGKD 3hurA 45 :LGAIPLAKAFQETASA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPI 3hurA 61 :DALIVSNLDEALELRQADLTLPIW T0547 132 :NGFKDRE 3hurA 87 :GAWDYSD T0547 141 :NIGFIAAEM 3hurA 94 :LKLFIDHDI T0547 154 :TLTIEGLNELE 3hurA 103 :VITIPSLAWLQ T0547 174 :FKPKPNIGLRVRLHSAGV 3hurA 118 :FEGTLKVSLAIDTGMTRI T0547 208 :S 3hurA 138 :D T0547 209 :TELIEAVNLLKENKLLEQFTMIHFHLGSQ 3hurA 140 :ADEISAAKKIIDKNPQLDLFSVYTHFATA T0547 240 :EIHP 3hurA 169 :DEAG T0547 245 :KKALNEAGNIYTELRKMG 3hurA 173 :EKSKAYFEEQLRRWQELT T0547 274 :GLAVEYSQF 3hurA 192 :NQGFDPSLF T0547 283 :KNEK 3hurA 239 :KMPP T0547 324 :FVAANHAVLIAPVLELFSQ 3hurA 244 :LHLERIFSVCSEIADVRFV T0547 343 :EYAENKLILKKQN 3hurA 278 :EDGYVATLPFGYN T0547 356 :PKLI 3hurA 292 :GWLR T0547 364 :DLYKSIKPSNALEYLH 3hurA 296 :RMQKSSVIINGKRMPI T0547 385 :LES 3hurA 312 :IGR T0547 390 :TLFDLGYVDLQDRSNAEILTHL 3hurA 315 :ITMDQTMVKLDRKYPIGTRVTL T0547 500 :HDV 3hurA 337 :IGK T0547 529 :LFTHPTEAIISINEKGYEVEGIIEA 3hurA 340 :DGGEQITVEEVANYSHTIVDEIQTT Number of specific fragments extracted= 22 number of extra gaps= 2 total=22884 Will force an alignment to be made, even if fragment is small Number of alignments=1031 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)T130 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 46 :PLLL 3hurA 8 :PTWV T0547 50 :RFPHLIQKQIENIYGNFN 3hurA 13 :VDLDAAAHNLQEIREWTK T0547 78 :GFNAVYPLKV 3hurA 31 :AKKVYAVLKA T0547 88 :NQYPGFVKNLVKLG 3hurA 45 :LGAIPLAKAFQETA T0547 104 :YNYGLEAGSKAELLLAMAYNNEGAPI 3hurA 59 :SADALIVSNLDEALELRQADLTLPIW T0547 132 :NGFKDR 3hurA 87 :GAWDYS T0547 140 :INIGFIAAEM 3hurA 93 :DLKLFIDHDI T0547 154 :TLTIEGLNELEAI 3hurA 103 :VITIPSLAWLQNL T0547 171 :KE 3hurA 116 :PD T0547 174 :FKPKPNIGLRVRLHS 3hurA 118 :FEGTLKVSLAIDTGM T0547 202 :SKF 3hurA 133 :TRI T0547 207 :TS 3hurA 138 :DK T0547 209 :TELIEAVNLLKENK 3hurA 141 :DEISAAKKIIDKNP T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRK 3hurA 155 :QLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTI T0547 263 :AKNLKA 3hurA 192 :NQGFDP T0547 305 :NIAEQKKDLEP 3hurA 236 :GELKMPPNLHL T0547 328 :NHAVLIAPVLELFSQEYAEN 3hurA 248 :RIFSVCSEIADVRFVKKDQS T0547 361 :ELYDLYKSIKPS 3hurA 268 :LSYGASERMPED T0547 373 :NALEYLHDSIDHLESI 3hurA 300 :SSVIINGKRMPIIGRI T0547 391 :LFDLGYVDLQDRSNAEILTHLI 3hurA 316 :TMDQTMVKLDRKYPIGTRVTLI Number of specific fragments extracted= 20 number of extra gaps= 2 total=22904 Will force an alignment to be made, even if fragment is small Number of alignments=1032 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)T130 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 T0547 50 :RFPHLIQKQIENIYGNFN 3hurA 13 :VDLDAAAHNLQEIREWTK T0547 78 :GFNAVYPLKV 3hurA 31 :AKKVYAVLKA T0547 88 :NQYPGFVKNLVKLGKD 3hurA 45 :LGAIPLAKAFQETASA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPI 3hurA 61 :DALIVSNLDEALELRQADLTLPIW T0547 132 :NGFKDR 3hurA 87 :GAWDYS T0547 140 :INIGFIAAEM 3hurA 93 :DLKLFIDHDI T0547 154 :TLTIEGLNELEAIID 3hurA 103 :VITIPSLAWLQNLPD T0547 174 :FKPKPNIGLRVRLHSAGV 3hurA 118 :FEGTLKVSLAIDTGMTRI T0547 206 :LTSTELIEAVNLLKENK 3hurA 138 :DKADEISAAKKIIDKNP T0547 224 :LEQFTMIHFHLGS 3hurA 155 :QLDLFSVYTHFAT T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 3hurA 169 :DEAGEKSKAYFEEQLRRWQELTINQ T0547 263 :AKNL 3hurA 194 :GFDP Number of specific fragments extracted= 12 number of extra gaps= 2 total=22916 Will force an alignment to be made, even if fragment is small Number of alignments=1033 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)T130 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 45 :GPLLLRFPHLIQKQIENIYGNFN 3hurA 8 :PTWVSVDLDAAAHNLQEIREWTK T0547 78 :GFNAVYPLKV 3hurA 31 :AKKVYAVLKA T0547 88 :NQYPGFVKNLVKLG 3hurA 45 :LGAIPLAKAFQETA T0547 104 :YNYGLEAGSKAELLLAMAYNNEGAPI 3hurA 59 :SADALIVSNLDEALELRQADLTLPIW T0547 132 :NGFKDRE 3hurA 87 :GAWDYSD T0547 141 :NIGFIAAEM 3hurA 94 :LKLFIDHDI T0547 154 :TLTIEGLNELE 3hurA 103 :VITIPSLAWLQ T0547 174 :FKPKPNIGLRVRLHSAGV 3hurA 118 :FEGTLKVSLAIDTGMTRI T0547 206 :LTSTELIEAVNLLKENK 3hurA 138 :DKADEISAAKKIIDKNP T0547 224 :LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKN 3hurA 155 :QLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFD T0547 287 :SR 3hurA 239 :KM T0547 310 :KKDLEPD 3hurA 241 :PPNLHLE T0547 328 :NHAVLIAPVLELFSQEYAENK 3hurA 248 :RIFSVCSEIADVRFVKKDQSL T0547 396 :YVDLQDRSNAEILTHLITKK 3hurA 269 :SYGASERMPEDGYVATLPFG T0547 421 :GDKQNPADLL 3hurA 289 :YNDGWLRRMQ T0547 439 :RYLVNF 3hurA 299 :KSSVII T0547 494 :DKPLFLHDVDVEKENYFLG 3hurA 305 :NGKRMPIIGRITMDQTMVK T0547 526 :KHNLFTHPTEAIISINEKG 3hurA 324 :LDRKYPIGTRVTLIGKDGG T0547 545 :YEVEGIIEAQS 3hurA 346 :TVEEVANYSHT Number of specific fragments extracted= 19 number of extra gaps= 2 total=22935 Will force an alignment to be made, even if fragment is small Number of alignments=1034 # 3hurA read from all-align.a2m # found chain 3hurA in template set Warning: unaligning (T0547)T130 because of BadResidue code BAD_PEPTIDE in next template residue (3hurA)L86 Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE at template residue (3hurA)L86 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (3hurA)F137 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (3hurA)F137 T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 3hurA 7 :RPTWVSVDLDAAAHNLQEIREWTK T0547 78 :GFNAVYPLKV 3hurA 31 :AKKVYAVLKA T0547 88 :NQYPGFVKNLVKLGKD 3hurA 45 :LGAIPLAKAFQETASA T0547 106 :YGLEAGSKAELLLAMAYNNEGAPI 3hurA 61 :DALIVSNLDEALELRQADLTLPIW T0547 132 :NGFKDRELINI 3hurA 87 :GAWDYSDLKLF T0547 145 :IAAEM 3hurA 98 :IDHDI T0547 154 :TLTIEGLNELE 3hurA 103 :VITIPSLAWLQ T0547 174 :FKPKPNIGLRVRLHS 3hurA 118 :FEGTLKVSLAIDTGM T0547 202 :SKF 3hurA 133 :TRI T0547 207 :TSTELIEAVNLLKENKLLEQFTMIHFHLGS 3hurA 138 :DKADEISAAKKIIDKNPQLDLFSVYTHFAT T0547 237 :QITEIHPLKKALNEAGNIYTEL 3hurA 169 :DEAGEKSKAYFEEQLRRWQELT T0547 262 :G 3hurA 191 :I T0547 274 :GLAVEYSQF 3hurA 192 :NQGFDPSLF T0547 283 :KNEKSR 3hurA 239 :KMPPNL T0547 311 :KD 3hurA 245 :HL T0547 327 :ANHAVLIAPVLELFSQEYAE 3hurA 247 :ERIFSVCSEIADVRFVKKDQ T0547 394 :LGYVDLQDRSNAEILTHLITK 3hurA 267 :SLSYGASERMPEDGYVATLPF T0547 449 :SMPD 3hurA 288 :GYND T0547 467 :RLDEEPTRSASIW 3hurA 292 :GWLRRMQKSSVII T0547 486 :DGEISYSKDKPL 3hurA 305 :NGKRMPIIGRIT T0547 498 :FLHDVDVEKENYFLG 3hurA 324 :LDRKYPIGTRVTLIG T0547 528 :NLFTHPTEAIISINEKGYEVEGIIEA 3hurA 339 :KDGGEQITVEEVANYSHTIVDEIQTT Number of specific fragments extracted= 22 number of extra gaps= 2 total=22957 Will force an alignment to be made, even if fragment is small Number of alignments=1035 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)A330 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)I609 because last residue in template chain is (3kw3A)I372 T0547 52 :PHLIQKQIENIYGNFNKARKEFG 3kw3A 16 :TAIATIDVRAIVANYRTLAQHVA T0547 78 :GFNAVYP 3kw3A 39 :PTECSAV T0547 88 :N 3kw3A 49 :N T0547 89 :QYPGFVKNLVKLGKD 3kw3A 54 :GAHKIAPALYQAGCR T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3kw3A 69 :TFFVAQIEEALQLKAVLPENVMIALLNGFPHK T0547 144 :FIAAEMGHNIT 3kw3A 101 :AEEFVAQSGII T0547 157 :IEGLNELEAIIDIAKERFKP 3kw3A 114 :LNSWSTIEDWQTLCQKKNKK T0547 178 :PNIGLRVR 3kw3A 134 :FPAIIQVD T0547 197 :SG 3kw3A 142 :TN T0547 202 :SKFGLTSTELIEAVNLLKENKLL 3kw3A 145 :SRLGLDKKELQKLIKNPTIFEKA T0547 226 :QFTMIHFHLG 3kw3A 168 :EIKYILSHLA T0547 236 :SQITEIHPLKKALNEAGNIYT 3kw3A 179 :GEDASHSSNNKQLAAFKRVLA T0547 263 :AKNLKAINLGGGLAVEYSQF 3kw3A 200 :QLPTCKVSFANSGGIFLGSD T0547 288 :RNYTLREYANDVVFILKNIAE 3kw3A 220 :FYFDLVRPGIALYGVDPHGKH T0547 310 :KKDLEP 3kw3A 241 :PTPLKA T0547 317 :IFIESGRFVAANH 3kw3A 247 :VVKVEAQVLQSRF T0547 524 :GMKH 3kw3A 286 :GYAD T0547 528 :NLFTHPTEAIISINEKGYEVEGIIEAQSILDTLED 3kw3A 291 :WPRILSNKGTVYFNGHKLPIVGHISMDSIIVDATD T0547 563 :LDYDIHAIMDILNER 3kw3A 328 :KKPQRGDWVELIGPH T0547 580 :NSKLVNDKQKKHILGELYLFLNDNGYLKS 3kw3A 343 :QPLEKVSTDTNTIPHEILTSLGKRYKRIY Number of specific fragments extracted= 20 number of extra gaps= 1 total=22977 Will force an alignment to be made, even if fragment is small Number of alignments=1036 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)A330 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)E386 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 55 :IQKQIENIYGNFNKARKEFG 3kw3A 19 :ATIDVRAIVANYRTLAQHVA T0547 78 :GFNAVYP 3kw3A 39 :PTECSAV T0547 88 :N 3kw3A 49 :N T0547 89 :QYPGFVKNLVKLGKD 3kw3A 54 :GAHKIAPALYQAGCR T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3kw3A 69 :TFFVAQIEEALQLKAVLPENVMIALLNGFPHK T0547 144 :FIAAEMGHNIT 3kw3A 101 :AEEFVAQSGII T0547 157 :IEGLNELEAIIDIAKERFKP 3kw3A 114 :LNSWSTIEDWQTLCQKKNKK T0547 178 :PNIGLRVR 3kw3A 134 :FPAIIQVD T0547 197 :SG 3kw3A 142 :TN T0547 202 :SKFGLTSTELIEAVNLLKENKLL 3kw3A 145 :SRLGLDKKELQKLIKNPTIFEKA T0547 226 :QFTMIHFHLG 3kw3A 168 :EIKYILSHLA T0547 236 :SQITEIHPLKKALNEAGNIYT 3kw3A 179 :GEDASHSSNNKQLAAFKRVLA T0547 263 :AKNLKAINLGGGLAVEYSQF 3kw3A 200 :QLPTCKVSFANSGGIFLGSD T0547 288 :RNYTLREYANDVVFILKNIAE 3kw3A 220 :FYFDLVRPGIALYGVDPHGKH T0547 310 :KKDLEP 3kw3A 241 :PTPLKA T0547 317 :IFIESGRFVAANH 3kw3A 247 :VVKVEAQVLQSRF T0547 387 :SILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDK 3kw3A 278 :STLATISIGYADGWPRILSNKGTVYFNGHKLPIVGHI Number of specific fragments extracted= 17 number of extra gaps= 1 total=22994 Will force an alignment to be made, even if fragment is small Number of alignments=1037 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)I609 because last residue in template chain is (3kw3A)I372 T0547 53 :HLIQKQIENIYGNFNKARKEFG 3kw3A 17 :AIATIDVRAIVANYRTLAQHVA T0547 78 :GFNAVYP 3kw3A 39 :PTECSAV T0547 88 :N 3kw3A 49 :N T0547 89 :QYPGFVKNLVKLG 3kw3A 54 :GAHKIAPALYQAG T0547 106 :Y 3kw3A 67 :C T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3kw3A 69 :TFFVAQIEEALQLKAVLPENVMIALLNGFPH T0547 143 :GFIAAEMGHNIT 3kw3A 100 :KAEEFVAQSGII T0547 157 :IEGLNELEAIIDIAKER 3kw3A 114 :LNSWSTIEDWQTLCQKK T0547 175 :KPKPNIGLRVRLHS 3kw3A 131 :NKKFPAIIQVDTNM T0547 202 :SKFGLTSTELIEAVNLLKENKLL 3kw3A 145 :SRLGLDKKELQKLIKNPTIFEKA T0547 226 :QFTMIHFHLG 3kw3A 168 :EIKYILSHLA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKMGA 3kw3A 179 :GEDASHSSNNKQLAAFKRVLAQLPTCKV T0547 267 :KAINLGGGLAVEYSQFKNEKSRNYT 3kw3A 207 :SFANSGGIFLGSDFYFDLVRPGIAL T0547 313 :LEPDIFIESGRFV 3kw3A 232 :YGVDPHGKHPTPL T0547 327 :ANHAVLIAPVLELFS 3kw3A 245 :KAVVKVEAQVLQSRF T0547 387 :SILTLFDLGYVDLQDRSNAEILTHLI 3kw3A 278 :STLATISIGYADGWPRILSNKGTVYF T0547 543 :KGYEVEGIIEAQSILDTLEDL 3kw3A 307 :KLPIVGHISMDSIIVDATDLD T0547 564 :DYDIHAIMDILNERISNSKLVN 3kw3A 329 :KPQRGDWVELIGPHQPLEKVST T0547 588 :QKKHILGELYLFLNDNGYLKS 3kw3A 351 :DTNTIPHEILTSLGKRYKRIY Number of specific fragments extracted= 19 number of extra gaps= 1 total=23013 Will force an alignment to be made, even if fragment is small Number of alignments=1038 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)E386 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 59 :IENIYGNFNKARKEFG 3kw3A 23 :VRAIVANYRTLAQHVA T0547 78 :GFNAVYP 3kw3A 39 :PTECSAV T0547 88 :N 3kw3A 49 :N T0547 89 :QYPGFVKNLVKLG 3kw3A 54 :GAHKIAPALYQAG T0547 106 :Y 3kw3A 67 :C T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3kw3A 69 :TFFVAQIEEALQLKAVLPENVMIALLNGFPH T0547 143 :GFIAAEMGHNIT 3kw3A 100 :KAEEFVAQSGII T0547 157 :IEGLNELEAIIDIAKER 3kw3A 114 :LNSWSTIEDWQTLCQKK T0547 175 :KPKPNIGLRVRLHS 3kw3A 131 :NKKFPAIIQVDTNM T0547 202 :SKFGLTSTELIEAVNLLKENKLL 3kw3A 145 :SRLGLDKKELQKLIKNPTIFEKA T0547 226 :QFTMIHFHLG 3kw3A 168 :EIKYILSHLA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKMGA 3kw3A 179 :GEDASHSSNNKQLAAFKRVLAQLPTCKV T0547 267 :KAINLGGGLAVEYSQFKNEKSRNYT 3kw3A 207 :SFANSGGIFLGSDFYFDLVRPGIAL T0547 313 :LEPDIFIESGRFV 3kw3A 232 :YGVDPHGKHPTPL T0547 327 :ANHAVLIAPVLELFS 3kw3A 245 :KAVVKVEAQVLQSRF T0547 387 :SILTLFDLGYVDLQDRSNAEILTHLI 3kw3A 278 :STLATISIGYADGWPRILSNKGTVYF T0547 472 :PTRSASIWDITCDSDGEI 3kw3A 304 :NGHKLPIVGHISMDSIIV T0547 494 :DKPLFLHDVDVEK 3kw3A 322 :DATDLDKKPQRGD T0547 510 :FLGFFLVGAYQE 3kw3A 335 :WVELIGPHQPLE T0547 524 :GMKHNLFTHPTEAIISINEK 3kw3A 347 :KVSTDTNTIPHEILTSLGKR Number of specific fragments extracted= 20 number of extra gaps= 1 total=23033 Will force an alignment to be made, even if fragment is small Number of alignments=1039 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)V35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)D40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L108 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)E109 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 T0547 1 :MMD 3kw3A 13 :FPA T0547 5 :GIDIWGNENFIIKNGKVCINYEKKPAIIDI 3kw3A 16 :TAIATIDVRAIVANYRTLAQHVAPTECSAV T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPL 3kw3A 49 :NAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENVMIAL T0547 90 :YPGFVKNLVKLGKDYNYG 3kw3A 94 :LNGFPHKAEEFVAQSGII T0547 110 :AGSKAELLLAMAYN 3kw3A 114 :LNSWSTIEDWQTLC T0547 124 :NEGAPITV 3kw3A 131 :NKKFPAII T0547 132 :NGFKDRELINIGFIAAEMGHNI 3kw3A 147 :LGLDKKELQKLIKNPTIFEKAE T0547 154 :TLTIEGLNELEAIID 3kw3A 185 :SSNNKQLAAFKRVLA T0547 177 :KPNIGLRVRLHSAGVGIWAKSGGI 3kw3A 200 :QLPTCKVSFANSGGIFLGSDFYFD T0547 201 :NSKFGLTST 3kw3A 229 :IALYGVDPH T0547 536 :AIISINEKGYEVEGIIEAQSILDTLEDLDY 3kw3A 299 :GTVYFNGHKLPIVGHISMDSIIVDATDLDK T0547 568 :HAIMDILNERISNSKLVND 3kw3A 329 :KPQRGDWVELIGPHQPLEK T0547 587 :KQKKHILGELYLFLNDN 3kw3A 350 :TDTNTIPHEILTSLGKR T0547 606 :LKSIGV 3kw3A 367 :YKRIYI Number of specific fragments extracted= 14 number of extra gaps= 1 total=23047 Will force an alignment to be made, even if fragment is small Number of alignments=1040 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 T0547 106 :YGLEAGSKAELL 3kw3A 51 :YGLGAHKIAPAL T0547 118 :LAMAYNNEGAPITVNGFKDRELINIGFI 3kw3A 70 :FFVAQIEEALQLKAVLPENVMIALLNGF T0547 146 :AAEMGHNIT 3kw3A 103 :EFVAQSGII T0547 157 :IEGLNELEAIIDIAKERF 3kw3A 114 :LNSWSTIEDWQTLCQKKN T0547 180 :IGLRVRLHS 3kw3A 132 :KKFPAIIQV T0547 196 :KSG 3kw3A 141 :DTN T0547 201 :NSKFGLTSTELIEAVNLLKENK 3kw3A 144 :MSRLGLDKKELQKLIKNPTIFE T0547 223 :LLEQFTMIHFHLGSQITEIHPL 3kw3A 167 :AEIKYILSHLANGEDASHSSNN Number of specific fragments extracted= 8 number of extra gaps= 1 total=23055 Will force an alignment to be made, even if fragment is small Number of alignments=1041 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L48 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)E308 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 T0547 49 :LRFPHLIQKQIENIYGNF 3kw3A 20 :TIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 91 :PGFVKNLVKLGK 3kw3A 56 :HKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAM 3kw3A 68 :RTFFVAQIEEALQLK T0547 122 :Y 3kw3A 83 :A T0547 124 :NEGAPI 3kw3A 84 :VLPENV T0547 130 :TVNGFKDRE 3kw3A 93 :LLNGFPHKA T0547 140 :I 3kw3A 102 :E T0547 143 :GF 3kw3A 103 :EF T0547 146 :AAEMG 3kw3A 105 :VAQSG T0547 153 :IT 3kw3A 110 :II T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 202 :SKFGLTSTELIEAVNLLKENKLLE 3kw3A 145 :SRLGLDKKELQKLIKNPTIFEKAE T0547 227 :FTMIHFHLGSQ 3kw3A 169 :IKYILSHLANG T0547 240 :EIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGL 3kw3A 180 :EDASHSSNNKQLAAFKRVLAQLPTCKVSFANSGGIF T0547 276 :AVEYSQFK 3kw3A 228 :GIALYGVD T0547 284 :NEKSR 3kw3A 238 :GKHPT T0547 291 :TLREYANDVVFILKNIA 3kw3A 243 :PLKAVVKVEAQVLQSRF T0547 343 :EYAENKLILKKQNPKLIDE 3kw3A 279 :TLATISIGYADGWPRILSN T0547 377 :YLHDSIDHLESI 3kw3A 303 :FNGHKLPIVGHI T0547 391 :LFDLGYVD 3kw3A 315 :SMDSIIVD T0547 399 :LQ 3kw3A 326 :LD T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERY 3kw3A 329 :KPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSLGKRYK T0547 608 :SIGV 3kw3A 369 :RIYI Number of specific fragments extracted= 26 number of extra gaps= 1 total=23081 Will force an alignment to be made, even if fragment is small Number of alignments=1042 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)P29 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 43 :YKGPLLLRFPHLIQKQIENIYG 3kw3A 14 :PATAIATIDVRAIVANYRTLAQ T0547 75 :YKGGFNAVYP 3kw3A 36 :HVAPTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 92 :GFVKNLVKLGK 3kw3A 57 :KIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFPHK T0547 141 :NIGF 3kw3A 101 :AEEF T0547 146 :AAEMGH 3kw3A 105 :VAQSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 202 :SKFGLTSTELIEAVNLLKENKLL 3kw3A 145 :SRLGLDKKELQKLIKNPTIFEKA T0547 226 :QFTMIHFHLGS 3kw3A 168 :EIKYILSHLAN T0547 237 :QITEIHPLKKALNEAGNIY 3kw3A 180 :EDASHSSNNKQLAAFKRVL T0547 260 :K 3kw3A 199 :A T0547 263 :AKNLKAINLGG 3kw3A 200 :QLPTCKVSFAN T0547 282 :FKNEKSRNY 3kw3A 216 :LGSDFYFDL T0547 306 :IAEQKK 3kw3A 228 :GIALYG T0547 313 :LEPDIFIESG 3kw3A 234 :VDPHGKHPTP T0547 326 :AANHAVLIAPVLELFS 3kw3A 244 :LKAVVKVEAQVLQSRF T0547 346 :ENKLILKKQNPKLIDE 3kw3A 278 :STLATISIGYADGWPR T0547 362 :LY 3kw3A 295 :LS T0547 366 :YKSIKPSNAL 3kw3A 297 :NKGTVYFNGH T0547 381 :SIDHLESI 3kw3A 307 :KLPIVGHI T0547 391 :LFDLGYVDLQDRS 3kw3A 315 :SMDSIIVDATDLD T0547 500 :HDV 3kw3A 328 :KKP T0547 504 :VEKENYFL 3kw3A 331 :QRGDWVEL T0547 550 :IIEAQSILDTLEDLDYDIHAI 3kw3A 339 :IGPHQPLEKVSTDTNTIPHEI T0547 600 :LNDNGY 3kw3A 360 :LTSLGK T0547 606 :LKSIGV 3kw3A 367 :YKRIYI Number of specific fragments extracted= 29 number of extra gaps= 1 total=23110 Will force an alignment to be made, even if fragment is small Number of alignments=1043 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)G42 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3kw3A 14 :PATAIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 91 :PGFVKNLVKLGK 3kw3A 56 :HKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFPHK T0547 141 :NIGF 3kw3A 101 :AEEF T0547 146 :AAEMG 3kw3A 105 :VAQSG T0547 153 :IT 3kw3A 110 :II T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 188 :S 3kw3A 145 :S T0547 203 :KFGLTSTELIEAVNLLKENKLL 3kw3A 146 :RLGLDKKELQKLIKNPTIFEKA T0547 226 :QFTMIHFHLGS 3kw3A 168 :EIKYILSHLAN T0547 237 :QITEIHPLKKALNEAGNIYTEL 3kw3A 180 :EDASHSSNNKQLAAFKRVLAQL T0547 265 :NLKAINLGGGLAVE 3kw3A 202 :PTCKVSFANSGGIF T0547 282 :FKNEKSR 3kw3A 216 :LGSDFYF T0547 291 :T 3kw3A 223 :D T0547 318 :FIESGRFVAA 3kw3A 224 :LVRPGIALYG T0547 328 :NHAVLIAPVLELFS 3kw3A 246 :AVVKVEAQVLQSRF T0547 346 :ENKLILKKQ 3kw3A 278 :STLATISIG T0547 355 :NPKLIDELYDL 3kw3A 288 :ADGWPRILSNK T0547 367 :KSIKPSN 3kw3A 299 :GTVYFNG T0547 380 :DSIDHLESI 3kw3A 306 :HKLPIVGHI T0547 391 :LFDLGYVD 3kw3A 315 :SMDSIIVD T0547 399 :LQDRSNAEILTHL 3kw3A 327 :DKKPQRGDWVELI T0547 412 :ITKKAILLLGD 3kw3A 344 :PLEKVSTDTNT T0547 443 :NFSLFQSMPDFWG 3kw3A 356 :PHEILTSLGKRYK T0547 608 :SIGV 3kw3A 369 :RIYI Number of specific fragments extracted= 28 number of extra gaps= 1 total=23138 Will force an alignment to be made, even if fragment is small Number of alignments=1044 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)K28 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 45 :GPLLLRFPHLIQKQIENIYGNF 3kw3A 16 :TAIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :N 3kw3A 49 :N T0547 89 :QYPGFVKNLVKLGK 3kw3A 54 :GAHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFPH T0547 140 :INIGF 3kw3A 100 :KAEEF T0547 146 :AAEMG 3kw3A 105 :VAQSG T0547 153 :IT 3kw3A 110 :II T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 202 :SKFGLTSTELIEAVNLLKENKLL 3kw3A 145 :SRLGLDKKELQKLIKNPTIFEKA T0547 226 :QFTMIHFHLGS 3kw3A 168 :EIKYILSHLAN T0547 237 :QITEIHPLKKALNEAGNIYT 3kw3A 180 :EDASHSSNNKQLAAFKRVLA T0547 262 :G 3kw3A 200 :Q T0547 264 :KNLKAINLG 3kw3A 201 :LPTCKVSFA T0547 282 :FKNEKSR 3kw3A 210 :NSGGIFL T0547 291 :TLREYAN 3kw3A 217 :GSDFYFD T0547 308 :EQKK 3kw3A 230 :ALYG T0547 313 :LEPDIFIESG 3kw3A 234 :VDPHGKHPTP T0547 326 :AANHAVLIAPVLELFS 3kw3A 244 :LKAVVKVEAQVLQSRF T0547 346 :ENKLILKKQNPKLIDELYDLYKSIKPSNA 3kw3A 278 :STLATISIGYADGWPRILSNKGTVYFNGH T0547 381 :SIDHLESI 3kw3A 307 :KLPIVGHI T0547 391 :LFDLGYVD 3kw3A 315 :SMDSIIVD T0547 399 :LQDRSNAEILTHLI 3kw3A 327 :DKKPQRGDWVELIG T0547 552 :EAQSILDTLEDLDYDIHAIMDI 3kw3A 341 :PHQPLEKVSTDTNTIPHEILTS T0547 603 :NG 3kw3A 363 :LG T0547 605 :YLKSIGV 3kw3A 366 :RYKRIYI Number of specific fragments extracted= 27 number of extra gaps= 1 total=23165 Will force an alignment to be made, even if fragment is small Number of alignments=1045 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)G42 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 Warning: unaligning (T0547)I609 because last residue in template chain is (3kw3A)I372 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3kw3A 14 :PATAIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :N 3kw3A 49 :N T0547 89 :QYPGFVKNLVKLGK 3kw3A 54 :GAHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFPHK T0547 141 :NIGF 3kw3A 101 :AEEF T0547 146 :AAEMGH 3kw3A 105 :VAQSGI T0547 153 :I 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 188 :S 3kw3A 145 :S T0547 203 :KFGLTSTELIEAVN 3kw3A 146 :RLGLDKKELQKLIK T0547 221 :NKLL 3kw3A 164 :FEKA T0547 226 :QFTMIHFHLGS 3kw3A 168 :EIKYILSHLAN T0547 237 :QITEIHPLKKALNEAGNIY 3kw3A 180 :EDASHSSNNKQLAAFKRVL T0547 261 :MGA 3kw3A 199 :AQL T0547 265 :NLKAINLGGGLAVE 3kw3A 202 :PTCKVSFANSGGIF T0547 282 :FKNEKSR 3kw3A 216 :LGSDFYF T0547 313 :L 3kw3A 223 :D T0547 318 :FIESGRFVAA 3kw3A 224 :LVRPGIALYG T0547 328 :NHAVLIAPVLELFS 3kw3A 246 :AVVKVEAQVLQSRF T0547 346 :ENKLILKKQ 3kw3A 278 :STLATISIG T0547 355 :NPKLIDELYDL 3kw3A 288 :ADGWPRILSNK T0547 377 :YLHDSIDHLESIL 3kw3A 303 :FNGHKLPIVGHIS T0547 392 :FDLGYVD 3kw3A 316 :MDSIIVD T0547 399 :LQDRSNAEIL 3kw3A 327 :DKKPQRGDWV T0547 548 :EGIIEAQSILDTLEDLDYDI 3kw3A 337 :ELIGPHQPLEKVSTDTNTIP T0547 594 :GELYLFLNDNGYLKS 3kw3A 357 :HEILTSLGKRYKRIY Number of specific fragments extracted= 28 number of extra gaps= 1 total=23193 Will force an alignment to be made, even if fragment is small Number of alignments=1046 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)G42 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3kw3A 14 :PATAIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :N 3kw3A 49 :N T0547 89 :QYPGFVKNLVKLGK 3kw3A 54 :GAHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFPHK T0547 141 :NIGF 3kw3A 101 :AEEF T0547 146 :AAEMGH 3kw3A 105 :VAQSGI T0547 153 :I 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 202 :SKFGLTSTELIEAVNLLKENKLL 3kw3A 145 :SRLGLDKKELQKLIKNPTIFEKA T0547 226 :QFTMIHFHLGS 3kw3A 168 :EIKYILSHLAN T0547 237 :QITEIHPLKKALNEAGNIY 3kw3A 180 :EDASHSSNNKQLAAFKRVL T0547 261 :MGA 3kw3A 199 :AQL T0547 265 :NLKAINLG 3kw3A 202 :PTCKVSFA T0547 274 :GL 3kw3A 221 :YF T0547 280 :SQFKNEKSRNY 3kw3A 229 :IALYGVDPHGK T0547 319 :IESGR 3kw3A 240 :HPTPL T0547 327 :ANHAVLIAPVLELFS 3kw3A 245 :KAVVKVEAQVLQSRF T0547 346 :ENKLILKKQNPKLIDE 3kw3A 278 :STLATISIGYADGWPR T0547 373 :NALE 3kw3A 294 :ILSN T0547 377 :YLHDSIDHLESI 3kw3A 303 :FNGHKLPIVGHI T0547 391 :LFDLGYVD 3kw3A 315 :SMDSIIVD T0547 399 :LQDRSNAEILT 3kw3A 327 :DKKPQRGDWVE T0547 549 :GIIEAQSILDTLEDLDYDIHAIMD 3kw3A 338 :LIGPHQPLEKVSTDTNTIPHEILT T0547 601 :NDNGY 3kw3A 365 :KRYKR T0547 609 :IGV 3kw3A 370 :IYI Number of specific fragments extracted= 27 number of extra gaps= 1 total=23220 Will force an alignment to be made, even if fragment is small Number of alignments=1047 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)E308 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 T0547 146 :AAEMG 3kw3A 105 :VAQSG T0547 153 :IT 3kw3A 110 :II T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 202 :SKFGLTSTELIEAVNLLKENKLLE 3kw3A 145 :SRLGLDKKELQKLIKNPTIFEKAE T0547 227 :FTMIHFHLGSQ 3kw3A 169 :IKYILSHLANG T0547 240 :EIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGL 3kw3A 180 :EDASHSSNNKQLAAFKRVLAQLPTCKVSFANSGGIF T0547 276 :AVEYSQFK 3kw3A 228 :GIALYGVD T0547 284 :NEKSR 3kw3A 238 :GKHPT T0547 291 :TLREYANDVVFILKNIA 3kw3A 243 :PLKAVVKVEAQVLQSRF T0547 343 :EYAENKLILKKQNPKLIDELYDLYKSI 3kw3A 279 :TLATISIGYADGWPRILSNKGTVYFNG T0547 380 :DSIDHLESI 3kw3A 306 :HKLPIVGHI T0547 391 :LFDLGYVD 3kw3A 315 :SMDSIIVD T0547 399 :LQ 3kw3A 326 :LD T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQ 3kw3A 329 :KPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSLGK Number of specific fragments extracted= 15 number of extra gaps= 1 total=23235 Will force an alignment to be made, even if fragment is small Number of alignments=1048 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 46 :PLLLRFPHLIQKQIENIYG 3kw3A 17 :AIATIDVRAIVANYRTLAQ T0547 75 :YKGGFNAVYP 3kw3A 36 :HVAPTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 92 :GFVKNLVKLGK 3kw3A 57 :KIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFPHK T0547 141 :NIGF 3kw3A 101 :AEEF T0547 146 :AAEMGH 3kw3A 105 :VAQSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 202 :SKFGLTSTELIEAVNLLKENKLL 3kw3A 145 :SRLGLDKKELQKLIKNPTIFEKA T0547 226 :QFTMIHFHLGS 3kw3A 168 :EIKYILSHLAN T0547 237 :QITEIHPLKKALNEAGNIY 3kw3A 180 :EDASHSSNNKQLAAFKRVL T0547 260 :K 3kw3A 199 :A T0547 263 :AKNLKAINLGG 3kw3A 200 :QLPTCKVSFAN T0547 282 :FKNEKSRNY 3kw3A 216 :LGSDFYFDL T0547 306 :IAEQKK 3kw3A 228 :GIALYG T0547 313 :LEPDIFIESG 3kw3A 234 :VDPHGKHPTP T0547 326 :AANHAVLIAPVLELFS 3kw3A 244 :LKAVVKVEAQVLQSRF T0547 346 :ENKLILKKQNPKLIDE 3kw3A 278 :STLATISIGYADGWPR T0547 362 :LY 3kw3A 295 :LS T0547 366 :YKSIKPSNAL 3kw3A 297 :NKGTVYFNGH T0547 381 :SIDHLESI 3kw3A 307 :KLPIVGHI T0547 391 :LFDLGYVDLQDRS 3kw3A 315 :SMDSIIVDATDLD T0547 500 :HDV 3kw3A 328 :KKP T0547 504 :VEKENYF 3kw3A 331 :QRGDWVE T0547 549 :GIIEAQSILDTLEDLDYDIHAIM 3kw3A 338 :LIGPHQPLEKVSTDTNTIPHEIL Number of specific fragments extracted= 27 number of extra gaps= 1 total=23262 Will force an alignment to be made, even if fragment is small Number of alignments=1049 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 45 :GPLLLRFPHLIQKQIENIYGNF 3kw3A 16 :TAIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 91 :PGFVKNLVKLGK 3kw3A 56 :HKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFPHK T0547 141 :NIGF 3kw3A 101 :AEEF T0547 146 :AAEMG 3kw3A 105 :VAQSG T0547 153 :IT 3kw3A 110 :II T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 188 :S 3kw3A 145 :S T0547 203 :KFGLTSTELIEAVNLLKENKLL 3kw3A 146 :RLGLDKKELQKLIKNPTIFEKA T0547 226 :QFTMIHFHLGS 3kw3A 168 :EIKYILSHLAN T0547 237 :QITEIHPLKKALNEAGNIYTEL 3kw3A 180 :EDASHSSNNKQLAAFKRVLAQL T0547 265 :NLKAINLGGGLAVE 3kw3A 202 :PTCKVSFANSGGIF T0547 282 :FKNEKSR 3kw3A 216 :LGSDFYF T0547 291 :T 3kw3A 223 :D T0547 318 :FIESGRFVAA 3kw3A 224 :LVRPGIALYG T0547 328 :NHAVLIAPVLELFS 3kw3A 246 :AVVKVEAQVLQSRF T0547 346 :ENKLILKKQ 3kw3A 278 :STLATISIG T0547 355 :NPKLIDELYDL 3kw3A 288 :ADGWPRILSNK T0547 367 :KSIKPSN 3kw3A 299 :GTVYFNG T0547 380 :DSIDHLESI 3kw3A 306 :HKLPIVGHI T0547 391 :LFDLGYVD 3kw3A 315 :SMDSIIVD T0547 399 :LQDRSNAEILTHLI 3kw3A 327 :DKKPQRGDWVELIG Number of specific fragments extracted= 25 number of extra gaps= 1 total=23287 Will force an alignment to be made, even if fragment is small Number of alignments=1050 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 45 :GPLLLRFPHLIQKQIENIYGNF 3kw3A 16 :TAIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :N 3kw3A 49 :N T0547 89 :QYPGFVKNLVKLGK 3kw3A 54 :GAHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFPH T0547 140 :INIGF 3kw3A 100 :KAEEF T0547 146 :AAEMG 3kw3A 105 :VAQSG T0547 153 :IT 3kw3A 110 :II T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 202 :SKFGLTSTELIEAVNLLKENKLL 3kw3A 145 :SRLGLDKKELQKLIKNPTIFEKA T0547 226 :QFTMIHFHLGS 3kw3A 168 :EIKYILSHLAN T0547 237 :QITEIHPLKKALNEAGNIYT 3kw3A 180 :EDASHSSNNKQLAAFKRVLA T0547 262 :G 3kw3A 200 :Q T0547 264 :KNLKAINLG 3kw3A 201 :LPTCKVSFA T0547 282 :FKNEKSR 3kw3A 210 :NSGGIFL T0547 291 :TLREYAN 3kw3A 217 :GSDFYFD T0547 308 :EQKK 3kw3A 230 :ALYG T0547 313 :LEPDIFIESG 3kw3A 234 :VDPHGKHPTP T0547 326 :AANHAVLIAPVLELFS 3kw3A 244 :LKAVVKVEAQVLQSRF T0547 346 :ENKLILKKQNPKLIDELYDLYKSIKPSNA 3kw3A 278 :STLATISIGYADGWPRILSNKGTVYFNGH T0547 381 :SIDHLESI 3kw3A 307 :KLPIVGHI T0547 391 :LFDLGYVD 3kw3A 315 :SMDSIIVD T0547 399 :LQDRSNAEILTHL 3kw3A 327 :DKKPQRGDWVELI T0547 551 :IEAQSILDTLEDLDYDIHAIMD 3kw3A 340 :GPHQPLEKVSTDTNTIPHEILT Number of specific fragments extracted= 25 number of extra gaps= 1 total=23312 Will force an alignment to be made, even if fragment is small Number of alignments=1051 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)G42 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3kw3A 14 :PATAIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :N 3kw3A 49 :N T0547 89 :QYPGFVKNLVKLGK 3kw3A 54 :GAHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFPHK T0547 141 :NIGF 3kw3A 101 :AEEF T0547 146 :AAEMGH 3kw3A 105 :VAQSGI T0547 153 :I 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 188 :S 3kw3A 145 :S T0547 203 :KFGLTSTELIEAVN 3kw3A 146 :RLGLDKKELQKLIK T0547 221 :NKLL 3kw3A 164 :FEKA T0547 226 :QFTMIHFHLGS 3kw3A 168 :EIKYILSHLAN T0547 237 :QITEIHPLKKALNEAGNIY 3kw3A 180 :EDASHSSNNKQLAAFKRVL T0547 261 :MGA 3kw3A 199 :AQL T0547 265 :NLKAINLGGGLAVE 3kw3A 202 :PTCKVSFANSGGIF T0547 282 :FKNEKSR 3kw3A 216 :LGSDFYF T0547 313 :L 3kw3A 223 :D T0547 318 :FIESGRFVAA 3kw3A 224 :LVRPGIALYG T0547 328 :NHAVLIAPVLELFS 3kw3A 246 :AVVKVEAQVLQSRF T0547 346 :ENKLILKKQ 3kw3A 278 :STLATISIG T0547 355 :NPKLIDELYDL 3kw3A 288 :ADGWPRILSNK T0547 377 :YLHDSIDHLESIL 3kw3A 303 :FNGHKLPIVGHIS T0547 392 :FDLGYVD 3kw3A 316 :MDSIIVD T0547 399 :LQDRSNAEILT 3kw3A 327 :DKKPQRGDWVE T0547 549 :GIIEAQSILDTLEDLDYDI 3kw3A 338 :LIGPHQPLEKVSTDTNTIP T0547 597 :YLFLN 3kw3A 357 :HEILT Number of specific fragments extracted= 28 number of extra gaps= 1 total=23340 Will force an alignment to be made, even if fragment is small Number of alignments=1052 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3kw3A 14 :PATAIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :N 3kw3A 49 :N T0547 89 :QYPGFVKNLVKLGK 3kw3A 54 :GAHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFPHK T0547 141 :NIGF 3kw3A 101 :AEEF T0547 146 :AAEMGH 3kw3A 105 :VAQSGI T0547 153 :I 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 202 :SKFGLTSTELIEAVNLLKENKLL 3kw3A 145 :SRLGLDKKELQKLIKNPTIFEKA T0547 226 :QFTMIHFHLGS 3kw3A 168 :EIKYILSHLAN T0547 237 :QITEIHPLKKALNEAGNIY 3kw3A 180 :EDASHSSNNKQLAAFKRVL T0547 261 :MGA 3kw3A 199 :AQL T0547 265 :NLKAINLG 3kw3A 202 :PTCKVSFA T0547 274 :GL 3kw3A 221 :YF T0547 280 :SQFKNEKSRNY 3kw3A 229 :IALYGVDPHGK T0547 319 :IESGR 3kw3A 240 :HPTPL T0547 327 :ANHAVLIAPVLELFS 3kw3A 245 :KAVVKVEAQVLQSRF T0547 346 :ENKLILKKQNPKLIDE 3kw3A 278 :STLATISIGYADGWPR T0547 373 :NALE 3kw3A 294 :ILSN T0547 377 :YLHDSIDHLESI 3kw3A 303 :FNGHKLPIVGHI T0547 391 :LFDLGYVD 3kw3A 315 :SMDSIIVD T0547 399 :LQDRSNAEILTHL 3kw3A 327 :DKKPQRGDWVELI T0547 551 :IEAQSILDTLED 3kw3A 340 :GPHQPLEKVSTD Number of specific fragments extracted= 25 number of extra gaps= 1 total=23365 Will force an alignment to be made, even if fragment is small Number of alignments=1053 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)G42 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3kw3A 14 :PATAIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQYPG 3kw3A 49 :NAYGL T0547 93 :FVKNLVKLGK 3kw3A 58 :IAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAY 3kw3A 68 :RTFFVAQIEEALQLKAV T0547 124 :NEGAPITV 3kw3A 85 :LPENVMIA T0547 132 :NGF 3kw3A 95 :NGF T0547 137 :RELINIGF 3kw3A 99 :HKAEEFVA T0547 150 :GHNIT 3kw3A 107 :QSGII T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRV 3kw3A 130 :KNKKFPAIIQV T0547 187 :HSAGV 3kw3A 141 :DTNMS T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 3kw3A 146 :RLGLDKKELQKLIKNPTIFEKAEIKY T0547 230 :IHFHLGSQI 3kw3A 172 :ILSHLANGE T0547 239 :TEIHPLKKALNEAGNIYTELR 3kw3A 182 :ASHSSNNKQLAAFKRVLAQLP T0547 263 :AKNLKAINLGG 3kw3A 203 :TCKVSFANSGG T0547 275 :LAV 3kw3A 214 :IFL T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIF 3kw3A 217 :GSDFYFDLVRPGIALYGVDPHGKHPTPL T0547 331 :VLIAPVLELFSQ 3kw3A 245 :KAVVKVEAQVLQ T0547 345 :A 3kw3A 278 :S T0547 347 :NKLILKK 3kw3A 279 :TLATISI T0547 354 :QNPKLIDELYDLYKSIKPSNALE 3kw3A 287 :YADGWPRILSNKGTVYFNGHKLP T0547 381 :SIDHL 3kw3A 310 :IVGHI T0547 388 :ILTLFDLGYVDLQ 3kw3A 315 :SMDSIIVDATDLD T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 3kw3A 329 :KPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSLGKR T0547 440 :Y 3kw3A 367 :Y T0547 607 :KSIGV 3kw3A 368 :KRIYI Number of specific fragments extracted= 27 number of extra gaps= 1 total=23392 Will force an alignment to be made, even if fragment is small Number of alignments=1054 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 Warning: unaligning (T0547)S445 because last residue in template chain is (3kw3A)I372 T0547 44 :KG 3kw3A 14 :PA T0547 46 :PLLLRFPHLIQKQIENIYGNF 3kw3A 17 :AIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 91 :PGFVKNLVKLGK 3kw3A 56 :HKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMA 3kw3A 68 :RTFFVAQIEEALQLKA T0547 122 :YNNE 3kw3A 85 :LPEN T0547 127 :APITV 3kw3A 89 :VMIAL T0547 132 :NGF 3kw3A 95 :NGF T0547 135 :K 3kw3A 99 :H T0547 139 :LINIGF 3kw3A 101 :AEEFVA T0547 148 :EMGH 3kw3A 107 :QSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 190 :GV 3kw3A 144 :MS T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 3kw3A 146 :RLGLDKKELQKLIKNPTIFEKAEIKY T0547 230 :IHFHLG 3kw3A 172 :ILSHLA T0547 236 :SQITEIHPLKKALNEAGNIYTEL 3kw3A 179 :GEDASHSSNNKQLAAFKRVLAQL T0547 261 :MGA 3kw3A 202 :PTC T0547 265 :NLKAINLGGGLAVEYSQFKNEKS 3kw3A 205 :KVSFANSGGIFLGSDFYFDLVRP T0547 306 :IAEQKKD 3kw3A 228 :GIALYGV T0547 316 :DIFIESGRFV 3kw3A 235 :DPHGKHPTPL T0547 327 :ANHAVLIAPVLELFS 3kw3A 245 :KAVVKVEAQVLQSRF T0547 345 :AE 3kw3A 278 :ST T0547 348 :KLILKK 3kw3A 280 :LATISI T0547 354 :QNPKLIDELYDLYKSIKPSNA 3kw3A 287 :YADGWPRILSNKGTVYFNGHK T0547 379 :HDSIDHLESILTLFDLGYV 3kw3A 308 :LPIVGHISMDSIIVDATDL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 3kw3A 327 :DKKPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSL T0547 437 :QERYLVNF 3kw3A 364 :GKRYKRIY Number of specific fragments extracted= 30 number of extra gaps= 1 total=23422 Will force an alignment to be made, even if fragment is small Number of alignments=1055 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)K17 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 Warning: unaligning (T0547)S445 because last residue in template chain is (3kw3A)I372 T0547 18 :NGKVC 3kw3A 14 :PATAI T0547 48 :LLRFPHLIQKQIENIYGNF 3kw3A 19 :ATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 91 :PGFVKNLVKLGK 3kw3A 56 :HKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAY 3kw3A 68 :RTFFVAQIEEALQLKAV T0547 123 :NNEGAPITV 3kw3A 86 :PENVMIALL T0547 133 :GFKDRELINIGF 3kw3A 95 :NGFPHKAEEFVA T0547 150 :GHNIT 3kw3A 107 :QSGII T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 190 :GV 3kw3A 144 :MS T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 3kw3A 146 :RLGLDKKELQKLIKNPTIFEKAEIKY T0547 230 :IHFHLG 3kw3A 172 :ILSHLA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKMGA 3kw3A 179 :GEDASHSSNNKQLAAFKRVLAQLPTCKV T0547 265 :N 3kw3A 207 :S T0547 268 :AINLGGGLAV 3kw3A 208 :FANSGGIFLG T0547 293 :REY 3kw3A 218 :SDF T0547 296 :ANDV 3kw3A 222 :FDLV T0547 300 :VFIL 3kw3A 228 :GIAL T0547 313 :LEPDIFIESGRFV 3kw3A 232 :YGVDPHGKHPTPL T0547 327 :ANHAVLIAPVLELFS 3kw3A 245 :KAVVKVEAQVLQSRF T0547 345 :AE 3kw3A 278 :ST T0547 348 :KLILKK 3kw3A 280 :LATISI T0547 354 :QNPKLIDELYDLYKSIKPSNALE 3kw3A 287 :YADGWPRILSNKGTVYFNGHKLP T0547 381 :SIDHLESILTLFDLGYV 3kw3A 310 :IVGHISMDSIIVDATDL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPA 3kw3A 327 :DKKPQRGDWVELIGPHQPLEKVSTDTNTI T0547 429 :LLAIQDEVQERYLVNF 3kw3A 356 :PHEILTSLGKRYKRIY Number of specific fragments extracted= 28 number of extra gaps= 1 total=23450 Will force an alignment to be made, even if fragment is small Number of alignments=1056 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 Warning: unaligning (T0547)S445 because last residue in template chain is (3kw3A)I372 T0547 44 :KG 3kw3A 14 :PA T0547 46 :PLLLRFPHLIQKQIENIYGNF 3kw3A 17 :AIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQ 3kw3A 49 :NA T0547 90 :YPGFVKNLVKLGK 3kw3A 55 :AHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAY 3kw3A 68 :RTFFVAQIEEALQLKAV T0547 123 :NNEGAPITVNGF 3kw3A 86 :PENVMIALLNGF T0547 135 :K 3kw3A 99 :H T0547 138 :ELINIGF 3kw3A 100 :KAEEFVA T0547 148 :EMGH 3kw3A 107 :QSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHSA 3kw3A 130 :KNKKFPAIIQVDTNMS T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 3kw3A 146 :RLGLDKKELQKLIKNPTIFEKAEIKY T0547 230 :IHFHLGS 3kw3A 172 :ILSHLAN T0547 237 :QITEIHPLKKALNEAGNIYTELR 3kw3A 180 :EDASHSSNNKQLAAFKRVLAQLP T0547 263 :A 3kw3A 204 :C T0547 265 :NLKAINLGGGLAVEYSQFKNEK 3kw3A 205 :KVSFANSGGIFLGSDFYFDLVR T0547 291 :TLR 3kw3A 227 :PGI T0547 308 :EQKKD 3kw3A 230 :ALYGV T0547 316 :DIFIESGRFV 3kw3A 235 :DPHGKHPTPL T0547 327 :ANHAVLIAPVLELFS 3kw3A 245 :KAVVKVEAQVLQSRF T0547 345 :AE 3kw3A 278 :ST T0547 348 :KLILKK 3kw3A 280 :LATISI T0547 354 :QNPKLIDELYDLYKSIKPSNALE 3kw3A 287 :YADGWPRILSNKGTVYFNGHKLP T0547 381 :SIDHLESILTLFDLGYV 3kw3A 310 :IVGHISMDSIIVDATDL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 3kw3A 327 :DKKPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSL T0547 437 :QERYLVNF 3kw3A 364 :GKRYKRIY Number of specific fragments extracted= 28 number of extra gaps= 1 total=23478 Will force an alignment to be made, even if fragment is small Number of alignments=1057 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 Warning: unaligning (T0547)S445 because last residue in template chain is (3kw3A)I372 T0547 44 :KG 3kw3A 14 :PA T0547 46 :PLLLRFPHLIQKQIENIYGNF 3kw3A 17 :AIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQYPGFVKNLVKLGK 3kw3A 53 :LGAHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFPHKAEEFVA T0547 148 :EMGHN 3kw3A 107 :QSGII T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHS 3kw3A 130 :KNKKFPAIIQVDTNM T0547 191 :V 3kw3A 145 :S T0547 203 :KFGLTSTELIEAVN 3kw3A 146 :RLGLDKKELQKLIK T0547 220 :ENKLLEQFT 3kw3A 163 :IFEKAEIKY T0547 230 :IHFHLG 3kw3A 172 :ILSHLA T0547 236 :SQITEIHPLKKALNEAGNIYTE 3kw3A 179 :GEDASHSSNNKQLAAFKRVLAQ T0547 263 :AKNLKAI 3kw3A 201 :LPTCKVS T0547 275 :LAV 3kw3A 208 :FAN T0547 278 :EYSQFKNEK 3kw3A 236 :PHGKHPTPL T0547 327 :ANHAVLIAPVLELFS 3kw3A 245 :KAVVKVEAQVLQSRF T0547 345 :AE 3kw3A 278 :ST T0547 348 :KLILKK 3kw3A 280 :LATISI T0547 354 :QNPKLIDELYDLYKSIK 3kw3A 287 :YADGWPRILSNKGTVYF T0547 375 :LEYLHDSIDHLESILTLFDLGYV 3kw3A 304 :NGHKLPIVGHISMDSIIVDATDL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPA 3kw3A 327 :DKKPQRGDWVELIGPHQPLEKVSTDTNTI T0547 429 :LLAIQDEVQERYLVNF 3kw3A 356 :PHEILTSLGKRYKRIY Number of specific fragments extracted= 23 number of extra gaps= 1 total=23501 Will force an alignment to be made, even if fragment is small Number of alignments=1058 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 Warning: unaligning (T0547)S445 because last residue in template chain is (3kw3A)I372 T0547 44 :KG 3kw3A 14 :PA T0547 46 :PLLLRFPHLIQKQIENIYGNF 3kw3A 17 :AIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 91 :PGFVKNLVKLGK 3kw3A 56 :HKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAY 3kw3A 68 :RTFFVAQIEEALQLKAV T0547 123 :NNEGAPITV 3kw3A 86 :PENVMIALL T0547 133 :GFKDRELINIGF 3kw3A 95 :NGFPHKAEEFVA T0547 148 :EMGH 3kw3A 107 :QSGI T0547 153 :I 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRV 3kw3A 130 :KNKKFPAIIQV T0547 187 :HSAGV 3kw3A 141 :DTNMS T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 3kw3A 146 :RLGLDKKELQKLIKNPTIFEKAEIKY T0547 230 :IHFHLGS 3kw3A 172 :ILSHLAN T0547 237 :QITEIHPLKKALNEAGNIY 3kw3A 180 :EDASHSSNNKQLAAFKRVL T0547 263 :A 3kw3A 204 :C T0547 265 :NLKAINLGGGLAVEYSQ 3kw3A 205 :KVSFANSGGIFLGSDFY T0547 283 :KNEK 3kw3A 226 :RPGI T0547 308 :EQKKD 3kw3A 230 :ALYGV T0547 316 :DIFIESGRFV 3kw3A 235 :DPHGKHPTPL T0547 327 :ANHAVLIAPVLELFS 3kw3A 245 :KAVVKVEAQVLQSRF T0547 345 :AE 3kw3A 278 :ST T0547 348 :KLILKK 3kw3A 280 :LATISI T0547 354 :QNPKLIDELYDLYKSIKPS 3kw3A 287 :YADGWPRILSNKGTVYFNG T0547 377 :YLHDSIDHLESILTLFDLGYV 3kw3A 306 :HKLPIVGHISMDSIIVDATDL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 3kw3A 327 :DKKPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSL T0547 437 :QERYLVNF 3kw3A 364 :GKRYKRIY Number of specific fragments extracted= 28 number of extra gaps= 1 total=23529 Will force an alignment to be made, even if fragment is small Number of alignments=1059 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 45 :GPLLLRFPHLIQKQIENIYGNF 3kw3A 16 :TAIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQYPG 3kw3A 49 :NAYGL T0547 93 :FVKNLVKLGK 3kw3A 58 :IAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAY 3kw3A 68 :RTFFVAQIEEALQLKAV T0547 124 :NEGAPITV 3kw3A 85 :LPENVMIA T0547 132 :NGF 3kw3A 95 :NGF T0547 137 :RELINIGF 3kw3A 99 :HKAEEFVA T0547 150 :GHNIT 3kw3A 107 :QSGII T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRV 3kw3A 130 :KNKKFPAIIQV T0547 187 :HSAGV 3kw3A 141 :DTNMS T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 3kw3A 146 :RLGLDKKELQKLIKNPTIFEKAEIKY T0547 230 :IHFHLGSQI 3kw3A 172 :ILSHLANGE T0547 239 :TEIHPLKKALNEAGNIYTELR 3kw3A 182 :ASHSSNNKQLAAFKRVLAQLP T0547 263 :AKNLKAINLGG 3kw3A 203 :TCKVSFANSGG T0547 275 :LAV 3kw3A 214 :IFL T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIF 3kw3A 217 :GSDFYFDLVRPGIALYGVDPHGKHPTPL T0547 331 :VLIAPVLELFSQ 3kw3A 245 :KAVVKVEAQVLQ T0547 345 :A 3kw3A 278 :S T0547 347 :NKLILKK 3kw3A 279 :TLATISI T0547 354 :QNPKLIDELYDLYKSIKPSNALE 3kw3A 287 :YADGWPRILSNKGTVYFNGHKLP T0547 381 :SIDHL 3kw3A 310 :IVGHI T0547 388 :ILTLFDLGYVDLQ 3kw3A 315 :SMDSIIVDATDLD T0547 401 :DRSNAEILTHLITKKAILLLGDKQNPADL 3kw3A 329 :KPQRGDWVELIGPHQPLEKVSTDTNTIPH Number of specific fragments extracted= 25 number of extra gaps= 1 total=23554 Will force an alignment to be made, even if fragment is small Number of alignments=1060 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 47 :LLLRFPHLIQKQIENIYGNF 3kw3A 18 :IATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 91 :PGFVKNLVKLGK 3kw3A 56 :HKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMA 3kw3A 68 :RTFFVAQIEEALQLKA T0547 122 :YNNE 3kw3A 85 :LPEN T0547 127 :APITV 3kw3A 89 :VMIAL T0547 132 :NGF 3kw3A 95 :NGF T0547 135 :K 3kw3A 99 :H T0547 139 :LINIGF 3kw3A 101 :AEEFVA T0547 148 :EMGH 3kw3A 107 :QSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 190 :GV 3kw3A 144 :MS T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 3kw3A 146 :RLGLDKKELQKLIKNPTIFEKAEIKY T0547 230 :IHFHLG 3kw3A 172 :ILSHLA T0547 236 :SQITEIHPLKKALNEAGNIYTEL 3kw3A 179 :GEDASHSSNNKQLAAFKRVLAQL T0547 261 :MGA 3kw3A 202 :PTC T0547 265 :NLKAINLGGGLAVEYSQFKNEKS 3kw3A 205 :KVSFANSGGIFLGSDFYFDLVRP T0547 306 :IAEQKKD 3kw3A 228 :GIALYGV T0547 316 :DIFIESGRFV 3kw3A 235 :DPHGKHPTPL T0547 327 :ANHAVLIAPVLELFS 3kw3A 245 :KAVVKVEAQVLQSRF T0547 345 :AE 3kw3A 278 :ST T0547 348 :KLILKK 3kw3A 280 :LATISI T0547 354 :QNPKLIDELYDLYKSIKPSNA 3kw3A 287 :YADGWPRILSNKGTVYFNGHK T0547 379 :HDSIDHLESILTLFDLGYV 3kw3A 308 :LPIVGHISMDSIIVDATDL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 3kw3A 327 :DKKPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSL T0547 437 :QERYLVN 3kw3A 364 :GKRYKRI Number of specific fragments extracted= 29 number of extra gaps= 1 total=23583 Will force an alignment to be made, even if fragment is small Number of alignments=1061 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 48 :LLRFPHLIQKQIENIYGNF 3kw3A 19 :ATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 91 :PGFVKNLVKLGK 3kw3A 56 :HKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAY 3kw3A 68 :RTFFVAQIEEALQLKAV T0547 123 :NNEGAPITV 3kw3A 86 :PENVMIALL T0547 133 :GFKDRELINIGF 3kw3A 95 :NGFPHKAEEFVA T0547 150 :GHNIT 3kw3A 107 :QSGII T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLH 3kw3A 130 :KNKKFPAIIQVDTN T0547 190 :GV 3kw3A 144 :MS T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 3kw3A 146 :RLGLDKKELQKLIKNPTIFEKAEIKY T0547 230 :IHFHLG 3kw3A 172 :ILSHLA T0547 236 :SQITEIHPLKKALNEAGNIYTELRKMGA 3kw3A 179 :GEDASHSSNNKQLAAFKRVLAQLPTCKV T0547 265 :N 3kw3A 207 :S T0547 268 :AINLGGGLAV 3kw3A 208 :FANSGGIFLG T0547 293 :REY 3kw3A 218 :SDF T0547 296 :ANDV 3kw3A 222 :FDLV T0547 300 :VFIL 3kw3A 228 :GIAL T0547 313 :LEPDIFIESGRFV 3kw3A 232 :YGVDPHGKHPTPL T0547 327 :ANHAVLIAPVLELFS 3kw3A 245 :KAVVKVEAQVLQSRF T0547 345 :AE 3kw3A 278 :ST T0547 348 :KLILKK 3kw3A 280 :LATISI T0547 354 :QNPKLIDELYDLYKSIKPSNALE 3kw3A 287 :YADGWPRILSNKGTVYFNGHKLP T0547 381 :SIDHLESILTLFDLGYV 3kw3A 310 :IVGHISMDSIIVDATDL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 3kw3A 327 :DKKPQRGDWVELIGPHQPLEKVSTDTNTIP T0547 430 :LAIQDEVQERY 3kw3A 357 :HEILTSLGKRY Number of specific fragments extracted= 27 number of extra gaps= 1 total=23610 Will force an alignment to be made, even if fragment is small Number of alignments=1062 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 Warning: unaligning (T0547)S445 because last residue in template chain is (3kw3A)I372 T0547 47 :LLLRFPHLIQKQIENIYGNF 3kw3A 18 :IATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQ 3kw3A 49 :NA T0547 90 :YPGFVKNLVKLGK 3kw3A 55 :AHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAY 3kw3A 68 :RTFFVAQIEEALQLKAV T0547 123 :NNEGAPITVNGF 3kw3A 86 :PENVMIALLNGF T0547 135 :K 3kw3A 99 :H T0547 138 :ELINIGF 3kw3A 100 :KAEEFVA T0547 148 :EMGH 3kw3A 107 :QSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHSA 3kw3A 130 :KNKKFPAIIQVDTNMS T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 3kw3A 146 :RLGLDKKELQKLIKNPTIFEKAEIKY T0547 230 :IHFHLGS 3kw3A 172 :ILSHLAN T0547 237 :QITEIHPLKKALNEAGNIYTELR 3kw3A 180 :EDASHSSNNKQLAAFKRVLAQLP T0547 263 :A 3kw3A 204 :C T0547 265 :NLKAINLGGGLAVEYSQFKNEK 3kw3A 205 :KVSFANSGGIFLGSDFYFDLVR T0547 291 :TLR 3kw3A 227 :PGI T0547 308 :EQKKD 3kw3A 230 :ALYGV T0547 316 :DIFIESGRFV 3kw3A 235 :DPHGKHPTPL T0547 327 :ANHAVLIAPVLELFS 3kw3A 245 :KAVVKVEAQVLQSRF T0547 345 :AE 3kw3A 278 :ST T0547 348 :KLILKK 3kw3A 280 :LATISI T0547 354 :QNPKLIDELYDLYKSIKPSNALE 3kw3A 287 :YADGWPRILSNKGTVYFNGHKLP T0547 381 :SIDHLESILTLFDLGYV 3kw3A 310 :IVGHISMDSIIVDATDL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 3kw3A 327 :DKKPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSL T0547 437 :QERYLVNF 3kw3A 364 :GKRYKRIY Number of specific fragments extracted= 27 number of extra gaps= 1 total=23637 Will force an alignment to be made, even if fragment is small Number of alignments=1063 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)G42 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNF 3kw3A 14 :PATAIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQYPGFVKNLVKLGK 3kw3A 53 :LGAHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGF 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFPHKAEEFVA T0547 148 :EMGHN 3kw3A 107 :QSGII T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHS 3kw3A 130 :KNKKFPAIIQVDTNM T0547 191 :V 3kw3A 145 :S T0547 203 :KFGLTSTELIEAVN 3kw3A 146 :RLGLDKKELQKLIK T0547 220 :ENKLLEQFT 3kw3A 163 :IFEKAEIKY T0547 230 :IHFHLG 3kw3A 172 :ILSHLA T0547 236 :SQITEIHPLKKALNEAGNIYTE 3kw3A 179 :GEDASHSSNNKQLAAFKRVLAQ T0547 263 :AKNLKAI 3kw3A 201 :LPTCKVS T0547 275 :LAV 3kw3A 208 :FAN T0547 278 :EYSQFKNEK 3kw3A 236 :PHGKHPTPL T0547 327 :ANHAVLIAPVLELFS 3kw3A 245 :KAVVKVEAQVLQSRF T0547 345 :AE 3kw3A 278 :ST T0547 348 :KLILKK 3kw3A 280 :LATISI T0547 354 :QNPKLIDELYDLYKSIK 3kw3A 287 :YADGWPRILSNKGTVYF T0547 375 :LEYLHDSIDHLESILTLFDLGYV 3kw3A 304 :NGHKLPIVGHISMDSIIVDATDL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPA 3kw3A 327 :DKKPQRGDWVELIGPHQPLEKVSTDTNTI T0547 429 :LLAIQDEVQER 3kw3A 356 :PHEILTSLGKR Number of specific fragments extracted= 22 number of extra gaps= 1 total=23659 Will force an alignment to be made, even if fragment is small Number of alignments=1064 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 3kw3A 15 :ATAIATIDVRAIVANYRTLAQHV T0547 77 :GGFNAVYP 3kw3A 38 :APTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 91 :PGFVKNLVKLGK 3kw3A 56 :HKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAY 3kw3A 68 :RTFFVAQIEEALQLKAV T0547 123 :NNEGAPITV 3kw3A 86 :PENVMIALL T0547 133 :GFKDRELINIGF 3kw3A 95 :NGFPHKAEEFVA T0547 148 :EMGH 3kw3A 107 :QSGI T0547 153 :I 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRV 3kw3A 130 :KNKKFPAIIQV T0547 187 :HSAGV 3kw3A 141 :DTNMS T0547 203 :KFGLTSTELIEAVNLLKENKLLEQFT 3kw3A 146 :RLGLDKKELQKLIKNPTIFEKAEIKY T0547 230 :IHFHLGS 3kw3A 172 :ILSHLAN T0547 237 :QITEIHPLKKALNEAGNIY 3kw3A 180 :EDASHSSNNKQLAAFKRVL T0547 263 :A 3kw3A 204 :C T0547 265 :NLKAINLGGGLAVEYSQ 3kw3A 205 :KVSFANSGGIFLGSDFY T0547 283 :KNEK 3kw3A 226 :RPGI T0547 308 :EQKKD 3kw3A 230 :ALYGV T0547 316 :DIFIESGRFV 3kw3A 235 :DPHGKHPTPL T0547 327 :ANHAVLIAPVLELFS 3kw3A 245 :KAVVKVEAQVLQSRF T0547 345 :AE 3kw3A 278 :ST T0547 348 :KLILKK 3kw3A 280 :LATISI T0547 354 :QNPKLIDELYDLYKSIKPS 3kw3A 287 :YADGWPRILSNKGTVYFNG T0547 377 :YLHDSIDHLESILTLFDLGYV 3kw3A 306 :HKLPIVGHISMDSIIVDATDL T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDE 3kw3A 327 :DKKPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSL Number of specific fragments extracted= 26 number of extra gaps= 1 total=23685 Will force an alignment to be made, even if fragment is small Number of alignments=1065 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L48 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)I350 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)K367 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 49 :LRFPHLIQKQIENIYGNFN 3kw3A 20 :TIDVRAIVANYRTLAQHVA T0547 78 :GFNAVYP 3kw3A 39 :PTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 91 :PGFVKNLVKLG 3kw3A 56 :HKIAPALYQAG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEM 3kw3A 67 :CRTFFVAQIEEALQLKAVLPENVMIALLNGFPHKAEEFVAQSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHS 3kw3A 130 :KNKKFPAIIQVDTNM T0547 202 :SKFGLTSTELIEAVNLLKENK 3kw3A 145 :SRLGLDKKELQKLIKNPTIFE T0547 224 :LEQFTMIHFHLGSQI 3kw3A 166 :KAEIKYILSHLANGE T0547 241 :IHPLKKALNEAGNIYTELRKMGAKNLKAINLGG 3kw3A 181 :DASHSSNNKQLAAFKRVLAQLPTCKVSFANSGG T0547 279 :YSQFKNEKS 3kw3A 215 :FLGSDFYFD T0547 298 :DVVFI 3kw3A 224 :LVRPG T0547 315 :PDI 3kw3A 229 :IAL T0547 324 :FVAANHAVLIAPVLELFSQEY 3kw3A 232 :YGVDPHGKHPTPLKAVVKVEA T0547 345 :AENKL 3kw3A 255 :LQSRF T0547 368 :SIKPS 3kw3A 278 :STLAT T0547 378 :L 3kw3A 304 :N T0547 381 :SIDHLE 3kw3A 307 :KLPIVG T0547 389 :LTLFDLGYVDLQDR 3kw3A 313 :HISMDSIIVDATDL T0547 403 :SNAEILTHLITKKAILLLGDKQNPADL 3kw3A 330 :PQRGDWVELIGPHQPLEKVSTDTNTIP T0547 596 :LYLFLNDNGYLKSIGV 3kw3A 357 :HEILTSLGKRYKRIYI Number of specific fragments extracted= 22 number of extra gaps= 1 total=23707 Will force an alignment to be made, even if fragment is small Number of alignments=1066 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)G42 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)S368 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 3kw3A 14 :PATAIATIDVRAIVANYRTLAQHVA T0547 78 :GFNAVYP 3kw3A 39 :PTECSAV T0547 88 :N 3kw3A 49 :N T0547 90 :YPGFVKNLVKLGK 3kw3A 55 :AHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIAL T0547 141 :NIGFIAAEM 3kw3A 102 :EEFVAQSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHS 3kw3A 130 :KNKKFPAIIQVDTNM T0547 202 :SKFGLTSTELIEAVNLLKENK 3kw3A 145 :SRLGLDKKELQKLIKNPTIFE T0547 224 :LEQFTMIHFHLGSQ 3kw3A 166 :KAEIKYILSHLANG T0547 238 :ITEIH 3kw3A 181 :DASHS T0547 246 :KALNEAGNIYTELRKMGAKNLKAIN 3kw3A 186 :SNNKQLAAFKRVLAQLPTCKVSFAN T0547 308 :EQKKDLEPD 3kw3A 218 :SDFYFDLVR T0547 332 :LIAPVLELFSQEY 3kw3A 234 :VDPHGKHPTPLKA T0547 345 :AENKLI 3kw3A 254 :VLQSRF T0547 369 :IKPS 3kw3A 278 :STLA T0547 373 :NALEYLHDS 3kw3A 286 :GYADGWPRI T0547 436 :VQERYLVNF 3kw3A 295 :LSNKGTVYF T0547 486 :DGEISYSKDKPL 3kw3A 304 :NGHKLPIVGHIS T0547 498 :FLH 3kw3A 319 :IIV T0547 501 :DVDVEKENYFLG 3kw3A 328 :KKPQRGDWVELI T0547 553 :AQSILDTLEDLDYDIHAIM 3kw3A 342 :HQPLEKVSTDTNTIPHEIL T0547 600 :LNDNGYLKSIGV 3kw3A 361 :TSLGKRYKRIYI Number of specific fragments extracted= 24 number of extra gaps= 1 total=23731 Will force an alignment to be made, even if fragment is small Number of alignments=1067 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)E386 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 44 :KGPLLL 3kw3A 14 :PATAIA T0547 50 :RFPHLIQKQIENIYGNFN 3kw3A 21 :IDVRAIVANYRTLAQHVA T0547 78 :GFNAVYP 3kw3A 39 :PTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 91 :PGFVKNLVKLG 3kw3A 56 :HKIAPALYQAG T0547 106 :YG 3kw3A 67 :CR T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3kw3A 70 :FFVAQIEEALQLKAVLPENVMIALLNGFPHK T0547 140 :INIGFIAAEM 3kw3A 101 :AEEFVAQSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHS 3kw3A 130 :KNKKFPAIIQVDTNM T0547 202 :SKFGLTSTELIEAVNLLKENK 3kw3A 145 :SRLGLDKKELQKLIKNPTIFE T0547 224 :LEQFTMIHFHLGS 3kw3A 166 :KAEIKYILSHLAN T0547 237 :QITEIHPLKKALNEAGNIYTELRKM 3kw3A 180 :EDASHSSNNKQLAAFKRVLAQLPTC T0547 289 :NYTLREYA 3kw3A 205 :KVSFANSG T0547 302 :IL 3kw3A 213 :GI T0547 312 :DLEPDIFI 3kw3A 215 :FLGSDFYF T0547 321 :SGRFVAA 3kw3A 227 :PGIALYG T0547 332 :LIAPVLELFSQ 3kw3A 234 :VDPHGKHPTPL T0547 360 :DELYDLYKSIKPS 3kw3A 245 :KAVVKVEAQVLQS T0547 387 :SILTLFDLGYVDLQDR 3kw3A 278 :STLATISIGYADGWPR T0547 403 :SNAEILTHL 3kw3A 295 :LSNKGTVYF T0547 426 :PADLLAIQDEVQERYLVN 3kw3A 304 :NGHKLPIVGHISMDSIIV T0547 446 :LFQSMPDFWGLEQ 3kw3A 322 :DATDLDKKPQRGD T0547 537 :IISINEKGYEVEGIIE 3kw3A 335 :WVELIGPHQPLEKVST T0547 553 :AQSILDTLEDL 3kw3A 353 :NTIPHEILTSL T0547 600 :LN 3kw3A 364 :GK T0547 605 :YLKSIGV 3kw3A 366 :RYKRIYI Number of specific fragments extracted= 28 number of extra gaps= 1 total=23759 Will force an alignment to be made, even if fragment is small Number of alignments=1068 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)E457 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 44 :KGPLLL 3kw3A 14 :PATAIA T0547 50 :RFPHLIQKQIENIYGNFN 3kw3A 21 :IDVRAIVANYRTLAQHVA T0547 78 :GFNAVYP 3kw3A 39 :PTECSAV T0547 88 :N 3kw3A 49 :N T0547 89 :QYPGFVKNLVKLGK 3kw3A 54 :GAHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFK 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGF T0547 138 :ELINIGFIAAEM 3kw3A 99 :HKAEEFVAQSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHS 3kw3A 130 :KNKKFPAIIQVDTNM T0547 202 :SKFGLTSTELIEAVNLLKENK 3kw3A 145 :SRLGLDKKELQKLIKNPTIFE T0547 224 :LEQFTMIHFHLGS 3kw3A 166 :KAEIKYILSHLAN T0547 238 :ITEIHPLKKALNEAGNIYTEL 3kw3A 179 :GEDASHSSNNKQLAAFKRVLA T0547 263 :AKNLKAINL 3kw3A 200 :QLPTCKVSF T0547 309 :QKKDL 3kw3A 231 :LYGVD T0547 335 :PVLELFSQEY 3kw3A 237 :HGKHPTPLKA T0547 345 :AENKLI 3kw3A 254 :VLQSRF T0547 458 :QNFPIMPLDRLDEEPTR 3kw3A 278 :STLATISIGYADGWPRI T0547 475 :SASI 3kw3A 299 :GTVY T0547 485 :SDGEISYSKDKPL 3kw3A 303 :FNGHKLPIVGHIS T0547 498 :FLHDVDVEKENYFLG 3kw3A 325 :DLDKKPQRGDWVELI T0547 551 :IEAQSILDTLEDLDYDIHAIMDIL 3kw3A 340 :GPHQPLEKVSTDTNTIPHEILTSL T0547 603 :NGYLKSIGV 3kw3A 364 :GKRYKRIYI Number of specific fragments extracted= 23 number of extra gaps= 1 total=23782 Will force an alignment to be made, even if fragment is small Number of alignments=1069 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 44 :KGPLLL 3kw3A 14 :PATAIA T0547 50 :RFPHLIQKQIENIYGNFN 3kw3A 21 :IDVRAIVANYRTLAQHVA T0547 78 :GFNAVYP 3kw3A 39 :PTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 91 :PGFVKNLVKLGK 3kw3A 56 :HKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFPHK T0547 141 :NIGFIAAEM 3kw3A 102 :EEFVAQSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHS 3kw3A 130 :KNKKFPAIIQVDTNM T0547 202 :SKFGLTSTELIEAVN 3kw3A 145 :SRLGLDKKELQKLIK T0547 221 :NK 3kw3A 164 :FE T0547 224 :LEQFTMIHFHLGS 3kw3A 166 :KAEIKYILSHLAN T0547 237 :QITEIHPLKKALNEAGNIY 3kw3A 180 :EDASHSSNNKQLAAFKRVL T0547 260 :KM 3kw3A 199 :AQ T0547 263 :AKNLK 3kw3A 201 :LPTCK T0547 328 :NHAVLIAPVLELFS 3kw3A 246 :AVVKVEAQVLQSRF T0547 407 :ILTHLITKKAI 3kw3A 278 :STLATISIGYA T0547 426 :PADLLA 3kw3A 289 :DGWPRI T0547 436 :VQERYLVNF 3kw3A 295 :LSNKGTVYF T0547 473 :TRSA 3kw3A 305 :GHKL T0547 488 :EISYSK 3kw3A 309 :PIVGHI T0547 532 :HPTEAIISINE 3kw3A 315 :SMDSIIVDATD T0547 543 :KGYEVEGIIEAQSILDTLEDLDYDI 3kw3A 332 :RGDWVELIGPHQPLEKVSTDTNTIP T0547 596 :LYLFLNDNGYLKSIGV 3kw3A 357 :HEILTSLGKRYKRIYI Number of specific fragments extracted= 25 number of extra gaps= 1 total=23807 Will force an alignment to be made, even if fragment is small Number of alignments=1070 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)G42 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)G421 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)E438 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 3kw3A 14 :PATAIATIDVRAIVANYRTLAQHVA T0547 78 :GFNAVYP 3kw3A 39 :PTECSAV T0547 88 :NQ 3kw3A 49 :NA T0547 90 :YPGFVKNLVKLGK 3kw3A 55 :AHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFP T0547 141 :NIGFIAAEM 3kw3A 102 :EEFVAQSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHS 3kw3A 130 :KNKKFPAIIQVDTNM T0547 202 :SKFGLTSTELIEAVNLLKENK 3kw3A 145 :SRLGLDKKELQKLIKNPTIFE T0547 224 :LEQFTMIHFHLGSQIT 3kw3A 166 :KAEIKYILSHLANGED T0547 240 :EI 3kw3A 183 :SH T0547 248 :LNEAGNIYTELRKMGAKNLKAINL 3kw3A 185 :SSNNKQLAAFKRVLAQLPTCKVSF T0547 342 :QEYAENKLILKKQNP 3kw3A 217 :GSDFYFDLVRPGIAL T0547 363 :YDLYKSI 3kw3A 232 :YGVDPHG T0547 399 :LQDR 3kw3A 239 :KHPT T0547 403 :SNAEILTHLITK 3kw3A 244 :LKAVVKVEAQVL T0547 417 :ILLL 3kw3A 256 :QSRF T0547 439 :RYLVNF 3kw3A 278 :STLATI T0547 447 :FQSMPDF 3kw3A 284 :SIGYADG T0547 463 :MPLDRLDEE 3kw3A 291 :WPRILSNKG T0547 475 :SASI 3kw3A 300 :TVYF T0547 486 :DGEISYSKDKPL 3kw3A 304 :NGHKLPIVGHIS T0547 498 :FLHDVDVEKEN 3kw3A 325 :DLDKKPQRGDW T0547 547 :VEGIIEAQSILDTLEDLDYDIH 3kw3A 336 :VELIGPHQPLEKVSTDTNTIPH T0547 597 :YLFLNDNGYLKSIGV 3kw3A 358 :EILTSLGKRYKRIYI Number of specific fragments extracted= 26 number of extra gaps= 1 total=23833 Will force an alignment to be made, even if fragment is small Number of alignments=1071 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 T0547 124 :NEGAPITVNGFKDRELINIGFIAAEM 3kw3A 85 :LPENVMIALLNGFPHKAEEFVAQSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHS 3kw3A 130 :KNKKFPAIIQVDTNM T0547 202 :SKFGLTSTELIEAVN 3kw3A 145 :SRLGLDKKELQKLIK Number of specific fragments extracted= 5 number of extra gaps= 1 total=23838 Will force an alignment to be made, even if fragment is small Number of alignments=1072 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)D364 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 47 :LLLRFPHLIQKQIENIYGNFN 3kw3A 18 :IATIDVRAIVANYRTLAQHVA T0547 78 :GFNAVYP 3kw3A 39 :PTECSAV T0547 88 :N 3kw3A 49 :N T0547 90 :YPGFVKNLVKLGK 3kw3A 55 :AHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIAL T0547 141 :NIGFIAAEM 3kw3A 102 :EEFVAQSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHS 3kw3A 130 :KNKKFPAIIQVDTNM T0547 202 :SKFGLTSTELIEAVNLLKENK 3kw3A 145 :SRLGLDKKELQKLIKNPTIFE T0547 224 :LEQFTMIHFHLGSQ 3kw3A 166 :KAEIKYILSHLANG T0547 238 :ITEIH 3kw3A 181 :DASHS T0547 246 :KALNEAGNIYTELRKMGAKNLKAIN 3kw3A 186 :SNNKQLAAFKRVLAQLPTCKVSFAN T0547 283 :KNEKS 3kw3A 223 :DLVRP T0547 306 :IAEQKKDLEPDI 3kw3A 228 :GIALYGVDPHGK T0547 323 :RFVAANHAV 3kw3A 242 :TPLKAVVKV T0547 333 :IAPVLELFS 3kw3A 251 :EAQVLQSRF T0547 365 :LYKSIKPSNALEYLHDS 3kw3A 278 :STLATISIGYADGWPRI T0547 436 :VQERYLVNF 3kw3A 295 :LSNKGTVYF T0547 486 :DGEISYSKDKPL 3kw3A 304 :NGHKLPIVGHIS T0547 498 :FLH 3kw3A 319 :IIV T0547 501 :DVDVEKENYFLG 3kw3A 328 :KKPQRGDWVELI T0547 553 :AQSILDTLEDLDYDIHAIM 3kw3A 342 :HQPLEKVSTDTNTIPHEIL Number of specific fragments extracted= 23 number of extra gaps= 1 total=23861 Will force an alignment to be made, even if fragment is small Number of alignments=1073 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 T0547 50 :RFPHLIQKQIENIYGNFN 3kw3A 21 :IDVRAIVANYRTLAQHVA T0547 78 :GFNAVYP 3kw3A 39 :PTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 91 :PGFVKNLVKLG 3kw3A 56 :HKIAPALYQAG T0547 106 :YG 3kw3A 67 :CR T0547 108 :LEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3kw3A 70 :FFVAQIEEALQLKAVLPENVMIALLNGFPHK T0547 140 :INIGFIAAEM 3kw3A 101 :AEEFVAQSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHS 3kw3A 130 :KNKKFPAIIQVDTNM T0547 202 :SKFGLTSTELIEAVNLLKENK 3kw3A 145 :SRLGLDKKELQKLIKNPTIFE T0547 224 :LEQFTMIHFHLGS 3kw3A 166 :KAEIKYILSHLAN T0547 237 :QITEIHPLKKALNEAGNIYTELR 3kw3A 180 :EDASHSSNNKQLAAFKRVLAQLP Number of specific fragments extracted= 13 number of extra gaps= 1 total=23874 Will force an alignment to be made, even if fragment is small Number of alignments=1074 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)L351 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)E457 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 50 :RFPHLIQKQIENIYGNFN 3kw3A 21 :IDVRAIVANYRTLAQHVA T0547 78 :GFNAVYP 3kw3A 39 :PTECSAV T0547 88 :N 3kw3A 49 :N T0547 89 :QYPGFVKNLVKLGK 3kw3A 54 :GAHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFK 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGF T0547 138 :ELINIGFIAAEM 3kw3A 99 :HKAEEFVAQSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHS 3kw3A 130 :KNKKFPAIIQVDTNM T0547 202 :SKFGLTSTELIEAVNLLKENK 3kw3A 145 :SRLGLDKKELQKLIKNPTIFE T0547 224 :LEQFTMIHFHLGS 3kw3A 166 :KAEIKYILSHLAN T0547 238 :ITEIHPLKKALNEAGNIYTEL 3kw3A 179 :GEDASHSSNNKQLAAFKRVLA T0547 263 :AKNLKAINL 3kw3A 200 :QLPTCKVSF T0547 309 :QKKDL 3kw3A 231 :LYGVD T0547 335 :PVLELFSQEY 3kw3A 237 :HGKHPTPLKA T0547 345 :AENKLI 3kw3A 254 :VLQSRF T0547 458 :QNFPIMPLDRLDEEPTR 3kw3A 278 :STLATISIGYADGWPRI T0547 475 :SASI 3kw3A 299 :GTVY T0547 485 :SDGEISYSKDKPL 3kw3A 303 :FNGHKLPIVGHIS T0547 498 :FLHDVDVEKENYFLG 3kw3A 325 :DLDKKPQRGDWVELI T0547 551 :IEAQSILDTLEDLDYDIHAIMD 3kw3A 340 :GPHQPLEKVSTDTNTIPHEILT Number of specific fragments extracted= 21 number of extra gaps= 1 total=23895 Will force an alignment to be made, even if fragment is small Number of alignments=1075 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (3kw3A)F13 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)Q342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 44 :KGPLLL 3kw3A 14 :PATAIA T0547 50 :RFPHLIQKQIENIYGNFN 3kw3A 21 :IDVRAIVANYRTLAQHVA T0547 78 :GFNAVYP 3kw3A 39 :PTECSAV T0547 88 :NQY 3kw3A 49 :NAY T0547 91 :PGFVKNLVKLGK 3kw3A 56 :HKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFPHK T0547 141 :NIGFIAAEM 3kw3A 102 :EEFVAQSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHS 3kw3A 130 :KNKKFPAIIQVDTNM T0547 202 :SKFGLTSTELIEAVN 3kw3A 145 :SRLGLDKKELQKLIK T0547 221 :NK 3kw3A 164 :FE T0547 224 :LEQFTMIHFHLGS 3kw3A 166 :KAEIKYILSHLAN T0547 237 :QITEIHPLKKALNEAGNIY 3kw3A 180 :EDASHSSNNKQLAAFKRVL T0547 260 :KM 3kw3A 199 :AQ T0547 263 :AKNLK 3kw3A 201 :LPTCK T0547 328 :NHAVLIAPVLELFS 3kw3A 246 :AVVKVEAQVLQSRF T0547 407 :ILTHLITKKAI 3kw3A 278 :STLATISIGYA T0547 426 :PADLLA 3kw3A 289 :DGWPRI T0547 436 :VQERYLVNF 3kw3A 295 :LSNKGTVYF T0547 473 :TRSA 3kw3A 305 :GHKL T0547 488 :EISYSK 3kw3A 309 :PIVGHI T0547 532 :HPTEAIISINE 3kw3A 315 :SMDSIIVDATD T0547 543 :KGYEVEGIIEAQSILDTLEDLDYDI 3kw3A 332 :RGDWVELIGPHQPLEKVSTDTNTIP Number of specific fragments extracted= 24 number of extra gaps= 1 total=23919 Will force an alignment to be made, even if fragment is small Number of alignments=1076 # 3kw3A read from all-align.a2m # found chain 3kw3A in template set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)A48 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)A48 Warning: unaligning (T0547)L155 because of BadResidue code BAD_PEPTIDE in next template residue (3kw3A)L113 Warning: unaligning (T0547)T156 because of BadResidue code BAD_PEPTIDE at template residue (3kw3A)L113 Warning: unaligning (T0547)G421 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kw3A)P277 Warning: unaligning (T0547)E438 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kw3A)P277 T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFN 3kw3A 14 :PATAIATIDVRAIVANYRTLAQHVA T0547 78 :GFNAVYP 3kw3A 39 :PTECSAV T0547 88 :NQ 3kw3A 49 :NA T0547 90 :YPGFVKNLVKLGK 3kw3A 55 :AHKIAPALYQAGC T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKD 3kw3A 68 :RTFFVAQIEEALQLKAVLPENVMIALLNGFP T0547 141 :NIGFIAAEM 3kw3A 102 :EEFVAQSGI T0547 154 :T 3kw3A 111 :I T0547 157 :IEGLNELEAIIDIAKE 3kw3A 114 :LNSWSTIEDWQTLCQK T0547 174 :FKPKPNIGLRVRLHS 3kw3A 130 :KNKKFPAIIQVDTNM T0547 202 :SKFGLTSTELIEAVNLLKENK 3kw3A 145 :SRLGLDKKELQKLIKNPTIFE T0547 224 :LEQFTMIHFHLGSQIT 3kw3A 166 :KAEIKYILSHLANGED T0547 240 :EI 3kw3A 183 :SH T0547 248 :LNEAGNIYTELRKMGAKNLKAINL 3kw3A 185 :SSNNKQLAAFKRVLAQLPTCKVSF T0547 342 :QEYAENKLILKKQNP 3kw3A 217 :GSDFYFDLVRPGIAL T0547 363 :YDLYKSI 3kw3A 232 :YGVDPHG T0547 399 :LQDR 3kw3A 239 :KHPT T0547 403 :SNAEILTHLITK 3kw3A 244 :LKAVVKVEAQVL T0547 417 :ILLL 3kw3A 256 :QSRF T0547 439 :RYLVNF 3kw3A 278 :STLATI T0547 464 :PLDRLDEEPTR 3kw3A 284 :SIGYADGWPRI T0547 475 :SASI 3kw3A 300 :TVYF T0547 486 :DGEISYSKDKPL 3kw3A 304 :NGHKLPIVGHIS T0547 498 :FLHDVDVEK 3kw3A 325 :DLDKKPQRG T0547 545 :YEVEGIIEAQSILDTLEDLDYDIHAIM 3kw3A 334 :DWVELIGPHQPLEKVSTDTNTIPHEIL Number of specific fragments extracted= 24 number of extra gaps= 1 total=23943 Will force an alignment to be made, even if fragment is small Number of alignments=1077 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)E507 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)N508 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)F513 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)F514 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)I550 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)I551 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 Warning: unaligning (T0547)S608 because last residue in template chain is (3llxA)W375 T0547 31 :IIDIV 3llxA 4 :APDWI T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFNKARK 3llxA 9 :AHPDTPYLLIDEAKLKSNINYLKQRVESLGS T0547 80 :N 3llxA 40 :H T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLG 3llxA 48 :LRTLEAAGYLLDSK T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITVNGFKD 3llxA 62 :SAPATVSTLAEAEAYAKAGYTDLLYAVGIAPA T0547 139 :LINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKP 3llxA 94 :KLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQD T0547 178 :PNIGLRVR 3llxA 132 :FSVFIEID T0547 197 :SGG 3llxA 140 :SDD T0547 202 :SKFGLTSTEL 3llxA 143 :HRGGIKPSDS T0547 213 :EAV 3llxA 153 :KLL T0547 217 :LLKENKLL 3llxA 156 :TIAKTLGE T0547 226 :QFTMIHFHLGSQ 3llxA 164 :HFTGLMTHAGGS T0547 238 :ITEI 3llxA 178 :CNTE T0547 242 :HPLKKALNEAGNIYTELRKMGA 3llxA 186 :NFAKQECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEYSQFKN 3llxA 217 :TPTAHFGEDFS T0547 487 :GEISYSKD 3llxA 245 :KNIGVCDF T0547 495 :KPLFLHDVDVEK 3llxA 254 :HIAMSVVTTVIG T0547 509 :YFLG 3llxA 268 :KEKN T0547 515 :LVG 3llxA 274 :LTD T0547 518 :AYQEVLGMKHNLFTHP 3llxA 290 :GQNRDFGYGQVCKIDG T0547 538 :ISINE 3llxA 306 :SVLDG T0547 545 :YEVEG 3llxA 311 :LCVNS T0547 552 :EAQSILDTLED 3llxA 318 :QEHGVIELSDA T0547 563 :LDYDIHAIMDILNERIS 3llxA 332 :EDFPVGHQLRIMPNHAC T0547 583 :LVND 3llxA 349 :ATAA T0547 587 :KQKKHILGELYLFLND 3llxA 355 :PVYHVLMSDGSHNTWQ T0547 604 :GYLK 3llxA 371 :RITG Number of specific fragments extracted= 29 number of extra gaps= 5 total=23972 Will force an alignment to be made, even if fragment is small Number of alignments=1078 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)D316 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)I317 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 T0547 59 :IENIYGNFNKARKEFGYKGG 3llxA 20 :EAKLKSNINYLKQRVESLGS T0547 80 :N 3llxA 40 :H T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLG 3llxA 48 :LRTLEAAGYLLDSK T0547 105 :NYGLEAGSKAELLLAMAYNNEGAPITVNGFKD 3llxA 62 :SAPATVSTLAEAEAYAKAGYTDLLYAVGIAPA T0547 139 :LINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKP 3llxA 94 :KLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQD T0547 178 :PNIGLRVR 3llxA 132 :FSVFIEID T0547 197 :SGG 3llxA 140 :SDD T0547 202 :SKFGLTSTEL 3llxA 143 :HRGGIKPSDS T0547 213 :EAV 3llxA 153 :KLL T0547 217 :LLKENKLL 3llxA 156 :TIAKTLGE T0547 226 :QFTMIHFHLGSQ 3llxA 164 :HFTGLMTHAGGS T0547 238 :ITEI 3llxA 178 :CNTE T0547 242 :HPLKKALNEAGNIYTELRKMGA 3llxA 186 :NFAKQECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEYSQFKNE 3llxA 217 :TPTAHFGEDFSD T0547 286 :KSRNYTL 3llxA 235 :GVYTTFD T0547 293 :REYANDVVFILKNIAEQ 3llxA 249 :VCDFSHIAMSVVTTVIG T0547 312 :DLEP 3llxA 268 :KEKN T0547 318 :FIESGRFVAA 3llxA 274 :LTDSGWMALS T0547 329 :HAVLIAPVLELFSQEY 3llxA 284 :RDSGTAGQNRDFGYGQ Number of specific fragments extracted= 21 number of extra gaps= 4 total=23993 Will force an alignment to be made, even if fragment is small Number of alignments=1079 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)S539 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)I540 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)G549 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)I550 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 T0547 34 :IV 3llxA 7 :WI T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 9 :AHPDTPYLLIDEAKLKSNINYLKQRVESL T0547 78 :GFN 3llxA 38 :GSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLG 3llxA 48 :LRTLEAAGYLLDSK T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAV T0547 132 :NGFKDRELI 3llxA 90 :IAPAKLKRV T0547 144 :FIAAEMGHNITLTIEGLNELEAIIDIAKER 3llxA 99 :AALRQQGINLHILLDNITQAQAVVDYAAEF T0547 175 :KPKPNIGLRVRL 3llxA 129 :GQDFSVFIEIDS T0547 199 :GIN 3llxA 141 :DDH T0547 203 :KFGLTSTEL 3llxA 144 :RGGIKPSDS T0547 213 :EAVNLLKEN 3llxA 153 :KLLTIAKTL T0547 223 :LL 3llxA 162 :GE T0547 226 :QFTMIHFHLGS 3llxA 164 :HFTGLMTHAGG T0547 237 :QITEIHPLK 3llxA 177 :ACNTEQGLK T0547 246 :KALNEAGNIYTELRKMGA 3llxA 190 :QECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEYSQFK 3llxA 217 :TPTAHFGEDF T0547 508 :NYF 3llxA 227 :SDI T0547 511 :LGFFLVGAYQEV 3llxA 234 :AGVYTTFDLVMK T0547 524 :GMKHNLFTHPTEAII 3llxA 251 :DFSHIAMSVVTTVIG T0547 541 :NEKG 3llxA 268 :KEKN T0547 551 :IEAQSILDTLEDLDYDIHAIMDILNERISNSKLVNDKQK 3llxA 274 :LTDSGWMALSRDSGTAGQNRDFGYGQVCKIDGSVLDGLC T0547 590 :KHILGELYLFLN 3llxA 333 :DFPVGHQLRIMP T0547 603 :NGYLKSIGV 3llxA 345 :NHACATAAM Number of specific fragments extracted= 25 number of extra gaps= 4 total=24018 Will force an alignment to be made, even if fragment is small Number of alignments=1080 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)I481 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)T482 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 9 :AHPDTPYLLIDEAKLKSNINYLKQRVESL T0547 78 :GFN 3llxA 38 :GSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLG 3llxA 48 :LRTLEAAGYLLDSK T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAV T0547 132 :NGFKDRELI 3llxA 90 :IAPAKLKRV T0547 144 :FIAAEMGHNITLTIEGLNELEAIIDIAKER 3llxA 99 :AALRQQGINLHILLDNITQAQAVVDYAAEF T0547 175 :KPKPNIGLRVRL 3llxA 129 :GQDFSVFIEIDS T0547 199 :GIN 3llxA 141 :DDH T0547 203 :KFGLTSTEL 3llxA 144 :RGGIKPSDS T0547 213 :EAVNLLKEN 3llxA 153 :KLLTIAKTL T0547 223 :LL 3llxA 162 :GE T0547 226 :QFTMIHFHLGS 3llxA 164 :HFTGLMTHAGG T0547 237 :QITEIHPLK 3llxA 177 :ACNTEQGLK T0547 246 :KALNEAGNIYTELRKMGA 3llxA 190 :QECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEYSQFK 3llxA 217 :TPTAHFGEDF T0547 392 :FDLGYVDLQDRSNAEILTHL 3llxA 232 :VRAGVYTTFDLVMKNIGVCD T0547 476 :ASIWD 3llxA 311 :LCVNS T0547 483 :CDSDGEI 3llxA 318 :QEHGVIE T0547 492 :SKDKP 3llxA 325 :LSDAY T0547 498 :FLHDVDV 3llxA 330 :QLEDFPV T0547 508 :NYFLGFFL 3llxA 337 :GHQLRIMP T0547 517 :GAYQEVLGMKHNLFTHPTEAIISIN 3llxA 345 :NHACATAAMHPVYHVLMSDGSHNTW Number of specific fragments extracted= 24 number of extra gaps= 3 total=24042 Will force an alignment to be made, even if fragment is small Number of alignments=1081 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)I550 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)I551 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 7 :WIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLG 3llxA 48 :LRTLEAAGYLLDSK T0547 105 :NYGLEAGSKAELLLAMAYN 3llxA 62 :SAPATVSTLAEAEAYAKAG T0547 125 :EGAPITVNGFKDRELINIGFIAAE 3llxA 81 :YTDLLYAVGIAPAKLKRVAALRQQ T0547 150 :GHNITLTIEGLNELEAIIDIAKER 3llxA 105 :GINLHILLDNITQAQAVVDYAAEF T0547 174 :FKPKPNIGLRVRLHSAGVGIWA 3llxA 130 :QDFSVFIEIDSDDHRGGIKPSD T0547 213 :EAVNLLKENKLL 3llxA 155 :LTIAKTLGEHFT T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK 3llxA 167 :GLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLET T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEYSQ 3llxA 217 :TPTAHFGE T0547 282 :F 3llxA 226 :F T0547 509 :YFLGFFLVGA 3llxA 232 :VRAGVYTTFD T0547 539 :SINEKGYEVEG 3llxA 305 :GSVLDGLCVNS T0547 552 :EAQSILDTLEDLDYDIHAIMDILNERISNSKLVNDKQ 3llxA 318 :QEHGVIELSDAYQLEDFPVGHQLRIMPNHACATAAMH T0547 595 :ELYLFLNDNGYLKSIGV 3llxA 355 :PVYHVLMSDGSHNTWQR Number of specific fragments extracted= 17 number of extra gaps= 3 total=24059 Will force an alignment to be made, even if fragment is small Number of alignments=1082 # 3llxA read from all-align.a2m # found chain 3llxA in template set T0547 97 :LVKLG 3llxA 57 :LLDSK T0547 105 :NYGLEAGSKAELLLAMAYN 3llxA 62 :SAPATVSTLAEAEAYAKAG T0547 125 :EGAPITVNGFKDRELINIGFIAAE 3llxA 81 :YTDLLYAVGIAPAKLKRVAALRQQ T0547 150 :GHNITLTIEGLNELEAIIDIAKERF 3llxA 105 :GINLHILLDNITQAQAVVDYAAEFG T0547 175 :KPKPNIGLRVRLHSAGVGIWA 3llxA 131 :DFSVFIEIDSDDHRGGIKPSD Number of specific fragments extracted= 5 number of extra gaps= 0 total=24064 Will force an alignment to be made, even if fragment is small Number of alignments=1083 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)S387 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)I388 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 4 :APDWIAHPDTPYLLIDEAKLKSNINYLKQRVESL T0547 78 :GFN 3llxA 38 :GSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNE 3llxA 63 :APATVSTLAEAEAYAKAGYT T0547 127 :APITVNGFKDRELINIGF 3llxA 83 :DLLYAVGIAPAKLKRVAA T0547 146 :AAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 101 :LRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKS 3llxA 128 :FGQDFSVFIEIDSDDHRGGIKPSD T0547 212 :IEAVNLLKENKL 3llxA 152 :SKLLTIAKTLGE T0547 226 :QFTMIHFHLGSQIT 3llxA 164 :HFTGLMTHAGGSYA T0547 240 :EIHPLKKALNEAGNIYTELRKMGAKNLKAIN 3llxA 183 :GLKNFAKQECDAVRIARNNLETAGIHCAITS T0547 274 :G 3llxA 217 :T T0547 276 :AVEY 3llxA 218 :PTAH T0547 282 :FKNEKS 3llxA 222 :FGEDFS T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIF 3llxA 228 :DISEVRAGVYTTFDLVMKNIGVCDFSHI T0547 329 :HAVLIAPVLE 3llxA 256 :AMSVVTTVIG T0547 344 :YAEN 3llxA 268 :KEKN T0547 350 :ILKKQNPKLIDE 3llxA 274 :LTDSGWMALSRD T0547 362 :LYDLYKSIKPS 3llxA 288 :TAGQNRDFGYG T0547 373 :NALEYLHDSIDHLE 3llxA 302 :KIDGSVLDGLCVNS T0547 389 :LTLFDLGYV 3llxA 318 :QEHGVIELS T0547 399 :LQDRSNAEILTHLITKKAILLL 3llxA 331 :LEDFPVGHQLRIMPNHACATAA T0547 426 :PAD 3llxA 353 :MHP T0547 429 :LLAIQDEVQERYLVNF 3llxA 357 :YHVLMSDGSHNTWQRI T0547 609 :IGV 3llxA 373 :TGW Number of specific fragments extracted= 25 number of extra gaps= 5 total=24089 Will force an alignment to be made, even if fragment is small Number of alignments=1084 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 4 :APDWIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 87 :V 3llxA 43 :P T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAVGIAPAK T0547 139 :LINIGF 3llxA 95 :LKRVAA T0547 146 :AAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 101 :LRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLH 3llxA 128 :FGQDFSVFIEIDSD T0547 188 :SA 3llxA 143 :HR T0547 204 :FGLTS 3llxA 145 :GGIKP T0547 209 :TE 3llxA 152 :SK T0547 215 :VNLLKENKLL 3llxA 154 :LLTIAKTLGE T0547 226 :QFTMIHFHLGSQIT 3llxA 164 :HFTGLMTHAGGSYA T0547 240 :E 3llxA 180 :T T0547 241 :IHPLKKALNEAGNIYTELRKMGA 3llxA 185 :KNFAKQECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEY 3llxA 217 :TPTAHF T0547 280 :SQFKNEKSRNYTLREY 3llxA 230 :SEVRAGVYTTFDLVMK T0547 320 :ESGRFVA 3llxA 246 :NIGVCDF T0547 327 :ANHAVLIAPVLE 3llxA 254 :HIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKKQNPKLIDE 3llxA 274 :LTDSGWMALSRD T0547 362 :LYDL 3llxA 287 :GTAG T0547 366 :YKSIKPSNALEYLH 3llxA 295 :FGYGQVCKIDGSVL T0547 385 :LESILT 3llxA 309 :DGLCVN T0547 392 :FDLGYVD 3llxA 318 :QEHGVIE T0547 399 :LQDRSNAEILTHL 3llxA 331 :LEDFPVGHQLRIM T0547 426 :PADLLAIQ 3llxA 344 :PNHACATA T0547 455 :GLEQNFPIMPLDRLDEEPTRS 3llxA 352 :AMHPVYHVLMSDGSHNTWQRI T0547 609 :IGV 3llxA 373 :TGW Number of specific fragments extracted= 30 number of extra gaps= 5 total=24119 Will force an alignment to be made, even if fragment is small Number of alignments=1085 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)I388 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 4 :APDWIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 87 :VN 3llxA 43 :PH T0547 89 :QYPGFVKNLVKLGK 3llxA 49 :RTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAVGIAPAK T0547 139 :LINIGF 3llxA 95 :LKRVAA T0547 146 :AAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 101 :LRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLH 3llxA 128 :FGQDFSVFIEIDSD T0547 202 :SKFGLTSTE 3llxA 143 :HRGGIKPSD T0547 213 :EAVNLLKENKL 3llxA 153 :KLLTIAKTLGE T0547 226 :QFTMIHFHLGSQ 3llxA 164 :HFTGLMTHAGGS T0547 238 :ITEIHPLKKA 3llxA 178 :CNTEQGLKNF T0547 248 :LNEAGNIYTELRKMGA 3llxA 192 :CDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEY 3llxA 217 :TPTAHF T0547 282 :FKN 3llxA 223 :GED T0547 288 :R 3llxA 227 :S T0547 291 :TLREYA 3llxA 228 :DISEVR T0547 313 :LEPDI 3llxA 234 :AGVYT T0547 318 :FIESGRFVA 3llxA 244 :MKNIGVCDF T0547 327 :ANHAVLIAPVLE 3llxA 254 :HIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKKQNPKLIDE 3llxA 274 :LTDSGWMALSRD T0547 362 :LY 3llxA 287 :GT T0547 367 :KSIKP 3llxA 289 :AGQNR T0547 373 :NALEYLHDSID 3llxA 294 :DFGYGQVCKID T0547 384 :HLES 3llxA 312 :CVNS T0547 392 :FDLGYVD 3llxA 318 :QEHGVIE T0547 399 :LQDRSNAEILTHLITKKA 3llxA 331 :LEDFPVGHQLRIMPNHAC T0547 417 :ILLLGDKQNPADLLAIQDEV 3llxA 350 :TAAMHPVYHVLMSDGSHNTW T0547 461 :PIMP 3llxA 370 :QRIT T0547 610 :GV 3llxA 374 :GW Number of specific fragments extracted= 32 number of extra gaps= 5 total=24151 Will force an alignment to be made, even if fragment is small Number of alignments=1086 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 4 :APDWIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 87 :VN 3llxA 43 :PH T0547 89 :QYPGFVKNLVKLGK 3llxA 49 :RTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAVGIAPAK T0547 139 :LINIGF 3llxA 95 :LKRVAA T0547 146 :AAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 101 :LRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLH 3llxA 128 :FGQDFSVFIEIDSD T0547 202 :SKFGLTSTELI 3llxA 143 :HRGGIKPSDSK T0547 215 :VNLLKENKLLE 3llxA 154 :LLTIAKTLGEH T0547 227 :FTMIHFHLGSQ 3llxA 165 :FTGLMTHAGGS T0547 239 :TE 3llxA 179 :NT T0547 241 :IHPLKKALNEAGNIYTELRKMGA 3llxA 185 :KNFAKQECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEY 3llxA 217 :TPTAHF T0547 280 :SQFKNEKSRNYTLRE 3llxA 230 :SEVRAGVYTTFDLVM T0547 319 :IESGRFVA 3llxA 245 :KNIGVCDF T0547 327 :ANHAVLIAPVLE 3llxA 254 :HIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKKQNPKLIDE 3llxA 274 :LTDSGWMALSRD T0547 362 :LYD 3llxA 287 :GTA T0547 366 :YKSIKPSNALEYLHDSIDHLESILT 3llxA 290 :GQNRDFGYGQVCKIDGSVLDGLCVN T0547 392 :FDLGYVD 3llxA 318 :QEHGVIE T0547 399 :LQDRSNAEILTHLITKKAILL 3llxA 331 :LEDFPVGHQLRIMPNHACATA T0547 455 :GLEQNFPIMPLDRLDEEPTR 3llxA 352 :AMHPVYHVLMSDGSHNTWQR T0547 608 :SIGV 3llxA 372 :ITGW Number of specific fragments extracted= 26 number of extra gaps= 5 total=24177 Will force an alignment to be made, even if fragment is small Number of alignments=1087 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)D33 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)I388 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 Warning: unaligning (T0547)Q554 because last residue in template chain is (3llxA)W375 T0547 34 :IV 3llxA 4 :AP T0547 38 :LRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 6 :DWIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNL 3llxA 48 :LRTLEAAGYL T0547 102 :KDYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3llxA 59 :DSKSAPATVSTLAEAEAYAKAGYTDLLYAVGIAPAK T0547 139 :LINIGF 3llxA 95 :LKRVAA T0547 146 :AAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 101 :LRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSA 3llxA 128 :FGQDFSVFIEIDSDDH T0547 203 :KFGLTST 3llxA 144 :RGGIKPS T0547 213 :EAVNLLKENKL 3llxA 153 :KLLTIAKTLGE T0547 226 :QFTMIHFHLGSQIT 3llxA 164 :HFTGLMTHAGGSYA T0547 240 :EIHPLKKA 3llxA 180 :TEQGLKNF T0547 248 :LNEAGNIYTELRKMGA 3llxA 192 :CDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEY 3llxA 217 :TPTAHF T0547 282 :FKN 3llxA 223 :GED T0547 287 :S 3llxA 226 :F T0547 310 :KKDL 3llxA 227 :SDIS T0547 318 :FIESGRFVAAN 3llxA 231 :EVRAGVYTTFD T0547 329 :HAVLIAPVLE 3llxA 256 :AMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKKQNPKLIDE 3llxA 274 :LTDSGWMALSRD T0547 362 :L 3llxA 287 :G T0547 366 :YKSIKPSNAL 3llxA 288 :TAGQNRDFGY T0547 377 :YLHDSIDHLES 3llxA 305 :GSVLDGLCVNS T0547 392 :FDLGYVD 3llxA 318 :QEHGVIE T0547 399 :LQDRSNAEILTHLITKKAILL 3llxA 331 :LEDFPVGHQLRIMPNHACATA T0547 531 :THPTEAIISINEKGYEVEGIIEA 3llxA 352 :AMHPVYHVLMSDGSHNTWQRITG Number of specific fragments extracted= 29 number of extra gaps= 5 total=24206 Will force an alignment to be made, even if fragment is small Number of alignments=1088 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 4 :APDWIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 87 :V 3llxA 43 :P T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAVGIAPAK T0547 139 :LINIGF 3llxA 95 :LKRVAA T0547 146 :AAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 101 :LRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLH 3llxA 128 :FGQDFSVFIEIDSD T0547 188 :S 3llxA 143 :H T0547 203 :KFGLTST 3llxA 144 :RGGIKPS T0547 214 :AVNLLKENKLLE 3llxA 153 :KLLTIAKTLGEH T0547 227 :FTMIHFHLGSQIT 3llxA 165 :FTGLMTHAGGSYA T0547 240 :E 3llxA 180 :T T0547 241 :IHPLKKALNEAGNIYTELRKMGA 3llxA 185 :KNFAKQECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEY 3llxA 217 :TPTAHF T0547 280 :SQFKNEKSRNYTLR 3llxA 230 :SEVRAGVYTTFDLV T0547 306 :IAEQ 3llxA 244 :MKNI T0547 322 :GRFVA 3llxA 248 :GVCDF T0547 327 :ANHAVLIAPVLE 3llxA 254 :HIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILT 3llxA 274 :LTDSGWMALSRDSGTAGQNRDFGYGQVCKIDGSVLDGLCVN T0547 392 :FDLGYVD 3llxA 318 :QEHGVIE T0547 399 :LQDRSNAEILTHLITKKAILLLG 3llxA 331 :LEDFPVGHQLRIMPNHACATAAM T0547 533 :PTE 3llxA 354 :HPV T0547 537 :IISINEKGYEVEGIIEA 3llxA 357 :YHVLMSDGSHNTWQRIT T0547 610 :GV 3llxA 374 :GW Number of specific fragments extracted= 27 number of extra gaps= 5 total=24233 Will force an alignment to be made, even if fragment is small Number of alignments=1089 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)S387 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)I388 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 37 :ELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 5 :PDWIAHPDTPYLLIDEAKLKSNINYLKQRVESL T0547 78 :GFN 3llxA 38 :GSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNE 3llxA 63 :APATVSTLAEAEAYAKAGYT T0547 127 :APITVNGFKDRELINIGF 3llxA 83 :DLLYAVGIAPAKLKRVAA T0547 146 :AAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 101 :LRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSAGVGIWAKS 3llxA 128 :FGQDFSVFIEIDSDDHRGGIKPSD T0547 212 :IEAVNLLKENKL 3llxA 152 :SKLLTIAKTLGE T0547 226 :QFTMIHFHLGSQIT 3llxA 164 :HFTGLMTHAGGSYA T0547 240 :EIHPLKKALNEAGNIYTELRKMGAKNLKAIN 3llxA 183 :GLKNFAKQECDAVRIARNNLETAGIHCAITS T0547 274 :G 3llxA 217 :T T0547 276 :AVEY 3llxA 218 :PTAH T0547 282 :FKNEKS 3llxA 222 :FGEDFS T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIF 3llxA 228 :DISEVRAGVYTTFDLVMKNIGVCDFSHI T0547 329 :HAVLIAPVLE 3llxA 256 :AMSVVTTVIG T0547 344 :YAEN 3llxA 268 :KEKN T0547 350 :ILKKQNPKLIDE 3llxA 274 :LTDSGWMALSRD T0547 362 :LYDLYKSIKPS 3llxA 288 :TAGQNRDFGYG T0547 373 :NALEYLHDSIDHLE 3llxA 302 :KIDGSVLDGLCVNS T0547 389 :LTLFDLGYV 3llxA 318 :QEHGVIELS T0547 399 :LQDRSNAEILTHLITKKA 3llxA 331 :LEDFPVGHQLRIMPNHAC Number of specific fragments extracted= 22 number of extra gaps= 5 total=24255 Will force an alignment to be made, even if fragment is small Number of alignments=1090 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 4 :APDWIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 87 :V 3llxA 43 :P T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAVGIAPAK T0547 139 :LINIGF 3llxA 95 :LKRVAA T0547 146 :AAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 101 :LRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLH 3llxA 128 :FGQDFSVFIEIDSD T0547 188 :SA 3llxA 143 :HR T0547 204 :FGLTS 3llxA 145 :GGIKP T0547 209 :TE 3llxA 152 :SK T0547 215 :VNLLKENKLL 3llxA 154 :LLTIAKTLGE T0547 226 :QFTMIHFHLGSQIT 3llxA 164 :HFTGLMTHAGGSYA T0547 240 :E 3llxA 180 :T T0547 241 :IHPLKKALNEAGNIYTELRKMGA 3llxA 185 :KNFAKQECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEY 3llxA 217 :TPTAHF T0547 280 :SQFKNEKSRNYTLREY 3llxA 230 :SEVRAGVYTTFDLVMK T0547 320 :ESGRFVA 3llxA 246 :NIGVCDF T0547 327 :ANHAVLIAPVLE 3llxA 254 :HIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKKQNPKLIDE 3llxA 274 :LTDSGWMALSRD T0547 362 :LYDL 3llxA 287 :GTAG T0547 366 :YKSIKPSNALEYLH 3llxA 295 :FGYGQVCKIDGSVL T0547 385 :LESILT 3llxA 309 :DGLCVN T0547 392 :FDLGYVD 3llxA 318 :QEHGVIE T0547 399 :LQDRSNAEILT 3llxA 331 :LEDFPVGHQLR Number of specific fragments extracted= 27 number of extra gaps= 5 total=24282 Will force an alignment to be made, even if fragment is small Number of alignments=1091 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)I388 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 4 :APDWIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 87 :VN 3llxA 43 :PH T0547 89 :QYPGFVKNLVKLGK 3llxA 49 :RTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAVGIAPAK T0547 139 :LINIGF 3llxA 95 :LKRVAA T0547 146 :AAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 101 :LRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLH 3llxA 128 :FGQDFSVFIEIDSD T0547 202 :SKFGLTSTE 3llxA 143 :HRGGIKPSD T0547 213 :EAVNLLKENKL 3llxA 153 :KLLTIAKTLGE T0547 226 :QFTMIHFHLGSQ 3llxA 164 :HFTGLMTHAGGS T0547 238 :ITEIHPLKKA 3llxA 178 :CNTEQGLKNF T0547 248 :LNEAGNIYTELRKMGA 3llxA 192 :CDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEY 3llxA 217 :TPTAHF T0547 282 :FKN 3llxA 223 :GED T0547 288 :R 3llxA 227 :S T0547 291 :TLREYA 3llxA 228 :DISEVR T0547 313 :LEPDI 3llxA 234 :AGVYT T0547 318 :FIESGRFVA 3llxA 244 :MKNIGVCDF T0547 327 :ANHAVLIAPVLE 3llxA 254 :HIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKKQNPKLIDE 3llxA 274 :LTDSGWMALSRD T0547 362 :LY 3llxA 287 :GT T0547 367 :KSIKP 3llxA 289 :AGQNR T0547 373 :NALEYLHDSID 3llxA 294 :DFGYGQVCKID T0547 384 :HLES 3llxA 312 :CVNS T0547 392 :FDLGYVD 3llxA 318 :QEHGVIE T0547 399 :LQDRSNAEILTHLITKKA 3llxA 331 :LEDFPVGHQLRIMPNHAC T0547 417 :ILLLGDKQNPADLLAIQDEV 3llxA 350 :TAAMHPVYHVLMSDGSHNTW Number of specific fragments extracted= 30 number of extra gaps= 5 total=24312 Will force an alignment to be made, even if fragment is small Number of alignments=1092 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 4 :APDWIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 87 :VN 3llxA 43 :PH T0547 89 :QYPGFVKNLVKLGK 3llxA 49 :RTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAVGIAPAK T0547 139 :LINIGF 3llxA 95 :LKRVAA T0547 146 :AAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 101 :LRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLH 3llxA 128 :FGQDFSVFIEIDSD T0547 202 :SKFGLTSTELI 3llxA 143 :HRGGIKPSDSK T0547 215 :VNLLKENKLLE 3llxA 154 :LLTIAKTLGEH T0547 227 :FTMIHFHLGSQ 3llxA 165 :FTGLMTHAGGS T0547 239 :TE 3llxA 179 :NT T0547 241 :IHPLKKALNEAGNIYTELRKMGA 3llxA 185 :KNFAKQECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEY 3llxA 217 :TPTAHF T0547 280 :SQFKNEKSRNYTLRE 3llxA 230 :SEVRAGVYTTFDLVM T0547 319 :IESGRFVA 3llxA 245 :KNIGVCDF T0547 327 :ANHAVLIAPVLE 3llxA 254 :HIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKKQNPKLIDE 3llxA 274 :LTDSGWMALSRD T0547 362 :LYD 3llxA 287 :GTA T0547 366 :YKSIKPSNALEYLHDSIDHLESILT 3llxA 290 :GQNRDFGYGQVCKIDGSVLDGLCVN T0547 392 :FDLGYVD 3llxA 318 :QEHGVIE T0547 399 :LQDRSNAEILTHLITKKAILL 3llxA 331 :LEDFPVGHQLRIMPNHACATA T0547 455 :GLEQNFPIMPLDRLDE 3llxA 352 :AMHPVYHVLMSDGSHN Number of specific fragments extracted= 25 number of extra gaps= 5 total=24337 Will force an alignment to be made, even if fragment is small Number of alignments=1093 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)I388 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 7 :WIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNL 3llxA 48 :LRTLEAAGYL T0547 102 :KDYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3llxA 59 :DSKSAPATVSTLAEAEAYAKAGYTDLLYAVGIAPAK T0547 139 :LINIGF 3llxA 95 :LKRVAA T0547 146 :AAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 101 :LRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSA 3llxA 128 :FGQDFSVFIEIDSDDH T0547 203 :KFGLTST 3llxA 144 :RGGIKPS T0547 213 :EAVNLLKENKL 3llxA 153 :KLLTIAKTLGE T0547 226 :QFTMIHFHLGSQIT 3llxA 164 :HFTGLMTHAGGSYA T0547 240 :EIHPLKKA 3llxA 180 :TEQGLKNF T0547 248 :LNEAGNIYTELRKMGA 3llxA 192 :CDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEY 3llxA 217 :TPTAHF T0547 282 :FKN 3llxA 223 :GED T0547 287 :S 3llxA 226 :F T0547 310 :KKDL 3llxA 227 :SDIS T0547 318 :FIESGRFVAAN 3llxA 231 :EVRAGVYTTFD T0547 329 :HAVLIAPVLE 3llxA 256 :AMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKKQNPKLIDE 3llxA 274 :LTDSGWMALSRD T0547 362 :L 3llxA 287 :G T0547 366 :YKSIKPSNAL 3llxA 288 :TAGQNRDFGY T0547 377 :YLHDSIDHLES 3llxA 305 :GSVLDGLCVNS T0547 392 :FDLGYVD 3llxA 318 :QEHGVIE T0547 399 :LQDRSNAEILTHLITKKAILL 3llxA 331 :LEDFPVGHQLRIMPNHACATA Number of specific fragments extracted= 27 number of extra gaps= 5 total=24364 Will force an alignment to be made, even if fragment is small Number of alignments=1094 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 4 :APDWIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 87 :V 3llxA 43 :P T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAVGIAPAK T0547 139 :LINIGF 3llxA 95 :LKRVAA T0547 146 :AAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 101 :LRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLH 3llxA 128 :FGQDFSVFIEIDSD T0547 188 :S 3llxA 143 :H T0547 203 :KFGLTST 3llxA 144 :RGGIKPS T0547 214 :AVNLLKENKLLE 3llxA 153 :KLLTIAKTLGEH T0547 227 :FTMIHFHLGSQIT 3llxA 165 :FTGLMTHAGGSYA T0547 240 :E 3llxA 180 :T T0547 241 :IHPLKKALNEAGNIYTELRKMGA 3llxA 185 :KNFAKQECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEY 3llxA 217 :TPTAHF T0547 280 :SQFKNEKSRNYTLR 3llxA 230 :SEVRAGVYTTFDLV T0547 306 :IAEQ 3llxA 244 :MKNI T0547 322 :GRFVA 3llxA 248 :GVCDF T0547 327 :ANHAVLIAPVLE 3llxA 254 :HIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILT 3llxA 274 :LTDSGWMALSRDSGTAGQNRDFGYGQVCKIDGSVLDGLCVN T0547 392 :FDLGYVD 3llxA 318 :QEHGVIE T0547 399 :LQDRSNAEILTHLITKKAI 3llxA 331 :LEDFPVGHQLRIMPNHACA Number of specific fragments extracted= 24 number of extra gaps= 5 total=24388 Will force an alignment to be made, even if fragment is small Number of alignments=1095 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)N80 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)M450 because last residue in template chain is (3llxA)W375 T0547 31 :IIDIVKE 3llxA 4 :APDWIAH T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 11 :PDTPYLLIDEAKLKSNINYLKQRVESL T0547 77 :G 3llxA 38 :G T0547 78 :G 3llxA 40 :H T0547 81 :AV 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEG 3llxA 63 :APATVSTLAEAEAYAKAGYTD T0547 129 :ITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 84 :LLYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRV 3llxA 128 :FGQDFSVFIEI T0547 187 :HSAGV 3llxA 139 :DSDDH T0547 203 :KFGLTSTEL 3llxA 144 :RGGIKPSDS T0547 213 :EAVNLLKENK 3llxA 153 :KLLTIAKTLG T0547 224 :LEQFT 3llxA 163 :EHFTG T0547 230 :IHFHLG 3llxA 168 :LMTHAG T0547 236 :SQITEI 3llxA 175 :SYACNT T0547 242 :HPL 3llxA 182 :QGL T0547 245 :KKALNEAGNIYTELRKMGA 3llxA 189 :KQECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 275 :LAVEYSQFKNE 3llxA 217 :TPTAHFGEDFS T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIF 3llxA 228 :DISEVRAGVYTTFDLVMKNIGVCDFSHI T0547 329 :HAVLIAPVLE 3llxA 256 :AMSVVTTVIG T0547 343 :EYAE 3llxA 268 :KEKN T0547 350 :ILKK 3llxA 274 :LTDS T0547 354 :QNPKLIDEL 3llxA 279 :WMALSRDSG T0547 363 :YDLYKSIKPSNALEYLHDSIDHLE 3llxA 289 :AGQNRDFGYGQVCKIDGSVLDGLC T0547 387 :SILTLFDLGYVDLQDRSNAEILTHLITKKAILLL 3llxA 319 :EHGVIELSDAYQLEDFPVGHQLRIMPNHACATAA T0547 428 :DLLAIQDEVQERYLVNFSLFQS 3llxA 353 :MHPVYHVLMSDGSHNTWQRITG Number of specific fragments extracted= 27 number of extra gaps= 4 total=24415 Will force an alignment to be made, even if fragment is small Number of alignments=1096 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)K28 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 29 :PA 3llxA 4 :AP T0547 33 :DIVKE 3llxA 6 :DWIAH T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 11 :PDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAVGIA T0547 135 :KDRELINIGF 3llxA 93 :AKLKRVAALR T0547 148 :EMGHNITLTIEGLNELEAIIDIAKE 3llxA 103 :QQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRV 3llxA 128 :FGQDFSVFIEI T0547 187 :HSAGV 3llxA 139 :DSDDH T0547 203 :KFGLTS 3llxA 144 :RGGIKP T0547 209 :TELI 3llxA 152 :SKLL T0547 216 :NLLKENK 3llxA 156 :TIAKTLG T0547 224 :LEQFT 3llxA 163 :EHFTG T0547 230 :IHFHLGS 3llxA 168 :LMTHAGG T0547 237 :QITEIHPLKKALNE 3llxA 177 :ACNTEQGLKNFAKQ T0547 251 :AGNIYTELRKMGA 3llxA 195 :VRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEYSQFK 3llxA 217 :TPTAHFGEDF T0547 311 :KD 3llxA 227 :SD T0547 316 :DIFIESGRFVAA 3llxA 229 :ISEVRAGVYTTF T0547 328 :NHAVLIAPVLE 3llxA 255 :IAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKK 3llxA 274 :LTDS T0547 354 :QNPKLIDELYDLYKSI 3llxA 279 :WMALSRDSGTAGQNRD T0547 375 :LE 3llxA 299 :QV T0547 377 :YLHDSID 3llxA 309 :DGLCVNS T0547 386 :ESILTLFDLGYVDLQDRSNAEILTHLI 3llxA 318 :QEHGVIELSDAYQLEDFPVGHQLRIMP T0547 414 :KKAILLLGD 3llxA 345 :NHACATAAM T0547 423 :K 3llxA 355 :P T0547 439 :RY 3llxA 356 :VY T0547 482 :TCDSDGEISYSKD 3llxA 359 :VLMSDGSHNTWQR Number of specific fragments extracted= 33 number of extra gaps= 5 total=24448 Will force an alignment to be made, even if fragment is small Number of alignments=1097 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 Warning: unaligning (T0547)D466 because last residue in template chain is (3llxA)W375 T0547 31 :IIDIVKE 3llxA 4 :APDWIAH T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 11 :PDTPYLLIDEAKLKSNINYLKQRVESL T0547 78 :GFN 3llxA 38 :GSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNE 3llxA 63 :APATVSTLAEAEAYAKAGYT T0547 127 :APITV 3llxA 83 :DLLYA T0547 132 :NGF 3llxA 89 :GIA T0547 135 :KDRELINIGF 3llxA 93 :AKLKRVAALR T0547 148 :EMGHNITLTIEGLNELEAIIDIAKE 3llxA 103 :QQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVR 3llxA 128 :FGQDFSVFIEID T0547 188 :SAGV 3llxA 140 :SDDH T0547 203 :KFGLTSTE 3llxA 144 :RGGIKPSD T0547 213 :EAVNLLKENK 3llxA 153 :KLLTIAKTLG T0547 224 :LEQFT 3llxA 163 :EHFTG T0547 230 :IHFHLGS 3llxA 168 :LMTHAGG T0547 237 :QITEIHPLKKALNE 3llxA 177 :ACNTEQGLKNFAKQ T0547 251 :AGNIYTELRKMGA 3llxA 195 :VRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVE 3llxA 217 :TPTAH T0547 306 :IAEQKKD 3llxA 222 :FGEDFSD T0547 316 :DIFIESGRFVAAN 3llxA 229 :ISEVRAGVYTTFD T0547 329 :HAVLIAPVLE 3llxA 256 :AMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKK 3llxA 274 :LTDS T0547 354 :QNPKLIDELYDLYKSI 3llxA 279 :WMALSRDSGTAGQNRD T0547 370 :KPSN 3llxA 306 :SVLD T0547 378 :LHDSID 3llxA 310 :GLCVNS T0547 386 :ESILTLFDLGYVDLQDRSNAEILTHLI 3llxA 318 :QEHGVIELSDAYQLEDFPVGHQLRIMP T0547 414 :KKAILLLGD 3llxA 345 :NHACATAAM T0547 423 :K 3llxA 355 :P T0547 426 :PADLLA 3llxA 356 :VYHVLM T0547 450 :MPDFWG 3llxA 362 :SDGSHN T0547 459 :NFPIMPL 3llxA 368 :TWQRITG Number of specific fragments extracted= 34 number of extra gaps= 5 total=24482 Will force an alignment to be made, even if fragment is small Number of alignments=1098 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)K28 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 29 :PA 3llxA 4 :AP T0547 33 :DIVKE 3llxA 6 :DWIAH T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 11 :PDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAVGIA T0547 135 :KDRELINIGF 3llxA 93 :AKLKRVAALR T0547 148 :EMGHNITLTIEGLNELEAIIDIAKE 3llxA 103 :QQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRV 3llxA 128 :FGQDFSVFIEI T0547 187 :HSAGV 3llxA 139 :DSDDH T0547 203 :KFGLTSTEL 3llxA 144 :RGGIKPSDS T0547 213 :EAVNLLKENK 3llxA 153 :KLLTIAKTLG T0547 224 :LEQFT 3llxA 163 :EHFTG T0547 230 :IHFHLGS 3llxA 168 :LMTHAGG T0547 237 :QITEIHPL 3llxA 177 :ACNTEQGL T0547 245 :KKALNEAGNIYTELRKMGA 3llxA 189 :KQECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEYSQFKNEK 3llxA 217 :TPTAHFGEDFSDI T0547 288 :RNY 3llxA 230 :SEV T0547 291 :TLRE 3llxA 241 :DLVM T0547 308 :EQKKDLE 3llxA 245 :KNIGVCD T0547 322 :G 3llxA 252 :F T0547 326 :AANHAVLIAPVLE 3llxA 253 :SHIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKK 3llxA 274 :LTDS T0547 354 :QNPKLIDELYDLYK 3llxA 279 :WMALSRDSGTAGQN T0547 369 :IKPSNALE 3llxA 293 :RDFGYGQV T0547 377 :YLHDSID 3llxA 309 :DGLCVNS T0547 386 :ESILTLFDLGYVDLQDRSNAEILTHLI 3llxA 318 :QEHGVIELSDAYQLEDFPVGHQLRIMP T0547 414 :KKAILLLGD 3llxA 345 :NHACATAAM T0547 423 :KQN 3llxA 355 :PVY T0547 482 :TCDSDGEISYSKD 3llxA 359 :VLMSDGSHNTWQR T0547 609 :IGV 3llxA 373 :TGW Number of specific fragments extracted= 34 number of extra gaps= 5 total=24516 Will force an alignment to be made, even if fragment is small Number of alignments=1099 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)G5 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 6 :IDIWGN 3llxA 4 :APDWIA T0547 42 :GYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 10 :HPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNL 3llxA 48 :LRTLEAAGYL T0547 101 :GK 3llxA 61 :KS T0547 106 :YGLEAGSKAELLLAMAYNNE 3llxA 63 :APATVSTLAEAEAYAKAGYT T0547 127 :APITV 3llxA 83 :DLLYA T0547 132 :NGF 3llxA 89 :GIA T0547 135 :KDRELINIGF 3llxA 93 :AKLKRVAALR T0547 148 :EMGHNITLTIEGLNELEAIIDIAKE 3llxA 103 :QQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRL 3llxA 128 :FGQDFSVFIEIDS T0547 189 :AGV 3llxA 141 :DDH T0547 203 :KFGLTST 3llxA 144 :RGGIKPS T0547 213 :EAVNLLKENK 3llxA 153 :KLLTIAKTLG T0547 224 :LEQFT 3llxA 163 :EHFTG T0547 230 :IHFHLGS 3llxA 168 :LMTHAGG T0547 237 :QITEIHPLKKALNE 3llxA 177 :ACNTEQGLKNFAKQ T0547 251 :AGNIYTELRKMGA 3llxA 195 :VRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVE 3llxA 217 :TPTAH T0547 306 :IAEQKKDLE 3llxA 222 :FGEDFSDIS T0547 318 :FIESGRFVAAN 3llxA 231 :EVRAGVYTTFD T0547 329 :HAVLIAPVLE 3llxA 256 :AMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKK 3llxA 274 :LTDS T0547 363 :YDLYKSIKPSNALE 3llxA 279 :WMALSRDSGTAGQN T0547 377 :YLHDSID 3llxA 309 :DGLCVNS T0547 386 :ESILTLFDLGYVDLQDRSNAEILTHLI 3llxA 318 :QEHGVIELSDAYQLEDFPVGHQLRIMP T0547 414 :KKAILLLGD 3llxA 345 :NHACATAAM T0547 423 :K 3llxA 355 :P T0547 440 :YL 3llxA 356 :VY T0547 481 :ITCDSDGEISYSK 3llxA 358 :HVLMSDGSHNTWQ T0547 550 :IIEA 3llxA 371 :RITG Number of specific fragments extracted= 34 number of extra gaps= 5 total=24550 Will force an alignment to be made, even if fragment is small Number of alignments=1100 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)G5 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 6 :IDI 3llxA 4 :APD T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 7 :WIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNE 3llxA 63 :APATVSTLAEAEAYAKAGYT T0547 127 :APITV 3llxA 83 :DLLYA T0547 132 :NGF 3llxA 89 :GIA T0547 135 :KDRELINIGF 3llxA 93 :AKLKRVAALR T0547 148 :EMGHNITLTIEGLNELEAIIDIAKE 3llxA 103 :QQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRV 3llxA 128 :FGQDFSVFIEI T0547 187 :HSAGV 3llxA 139 :DSDDH T0547 203 :KFGLTST 3llxA 144 :RGGIKPS T0547 213 :EAVNLLKENK 3llxA 153 :KLLTIAKTLG T0547 224 :LEQFT 3llxA 163 :EHFTG T0547 230 :IHFHLGS 3llxA 168 :LMTHAGG T0547 237 :QITEIHPL 3llxA 177 :ACNTEQGL T0547 245 :KKALNEAGNIYTELRKMGA 3llxA 189 :KQECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEYSQ 3llxA 217 :TPTAHFGE T0547 312 :DLEPDIFIESGRFVAAN 3llxA 225 :DFSDISEVRAGVYTTFD T0547 329 :HAVLIAPVLE 3llxA 256 :AMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKK 3llxA 274 :LTDS T0547 354 :QNPKLIDELYDLYKSIKPSN 3llxA 279 :WMALSRDSGTAGQNRDFGYG T0547 377 :YLHDSID 3llxA 309 :DGLCVNS T0547 386 :ESILTLFDLGYVDLQDRSNAEILTHLI 3llxA 318 :QEHGVIELSDAYQLEDFPVGHQLRIMP T0547 414 :KKAILLLGD 3llxA 345 :NHACATAAM T0547 438 :ERY 3llxA 355 :PVY T0547 481 :ITCDSDGEISYSKD 3llxA 358 :HVLMSDGSHNTWQR T0547 552 :EAQ 3llxA 372 :ITG Number of specific fragments extracted= 31 number of extra gaps= 5 total=24581 Will force an alignment to be made, even if fragment is small Number of alignments=1101 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)N80 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)Q342 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 T0547 32 :IDIVKE 3llxA 5 :PDWIAH T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 11 :PDTPYLLIDEAKLKSNINYLKQRVESL T0547 77 :G 3llxA 38 :G T0547 78 :G 3llxA 40 :H T0547 81 :AV 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEG 3llxA 63 :APATVSTLAEAEAYAKAGYTD T0547 129 :ITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 84 :LLYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRV 3llxA 128 :FGQDFSVFIEI T0547 187 :HSAGV 3llxA 139 :DSDDH T0547 203 :KFGLTSTEL 3llxA 144 :RGGIKPSDS T0547 213 :EAVNLLKENK 3llxA 153 :KLLTIAKTLG T0547 224 :LEQFT 3llxA 163 :EHFTG T0547 230 :IHFHLG 3llxA 168 :LMTHAG T0547 236 :SQITEI 3llxA 175 :SYACNT T0547 242 :HPL 3llxA 182 :QGL T0547 245 :KKALNEAGNIYTELRKMGA 3llxA 189 :KQECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 275 :LAVEYSQFKNE 3llxA 217 :TPTAHFGEDFS T0547 291 :TLREYANDVVFILKNIAEQKKDLEPDIF 3llxA 228 :DISEVRAGVYTTFDLVMKNIGVCDFSHI T0547 329 :HAVLIAPVLE 3llxA 256 :AMSVVTTVIG T0547 343 :EYAE 3llxA 268 :KEKN T0547 350 :ILKK 3llxA 274 :LTDS T0547 354 :QNPKLIDEL 3llxA 279 :WMALSRDSG T0547 363 :YDLYKSIKPSNALEYLHDSIDHLE 3llxA 289 :AGQNRDFGYGQVCKIDGSVLDGLC T0547 387 :SILTLFDLGYVDLQDRSNAEILTHLITKKAILLL 3llxA 319 :EHGVIELSDAYQLEDFPVGHQLRIMPNHACATAA T0547 428 :DLLAIQDEVQERY 3llxA 353 :MHPVYHVLMSDGS Number of specific fragments extracted= 27 number of extra gaps= 4 total=24608 Will force an alignment to be made, even if fragment is small Number of alignments=1102 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 34 :IVKE 3llxA 7 :WIAH T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 11 :PDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAVGIA T0547 135 :KDRELINIGF 3llxA 93 :AKLKRVAALR T0547 148 :EMGHNITLTIEGLNELEAIIDIAKE 3llxA 103 :QQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRV 3llxA 128 :FGQDFSVFIEI T0547 187 :HSAGV 3llxA 139 :DSDDH T0547 203 :KFGLTS 3llxA 144 :RGGIKP T0547 209 :TELI 3llxA 152 :SKLL T0547 216 :NLLKENK 3llxA 156 :TIAKTLG T0547 224 :LEQFT 3llxA 163 :EHFTG T0547 230 :IHFHLGS 3llxA 168 :LMTHAGG T0547 237 :QITEIHPLKKALNE 3llxA 177 :ACNTEQGLKNFAKQ T0547 251 :AGNIYTELRKMGA 3llxA 195 :VRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEYSQFK 3llxA 217 :TPTAHFGEDF T0547 311 :KD 3llxA 227 :SD T0547 316 :DIFIESGRFVAA 3llxA 229 :ISEVRAGVYTTF T0547 328 :NHAVLIAPVLE 3llxA 255 :IAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKK 3llxA 274 :LTDS T0547 354 :QNPKLIDELYDLYKSI 3llxA 279 :WMALSRDSGTAGQNRD T0547 375 :LE 3llxA 299 :QV T0547 377 :YLHDSID 3llxA 309 :DGLCVNS T0547 386 :ESILTLFDLGYVDLQDRSNAEILTHLI 3llxA 318 :QEHGVIELSDAYQLEDFPVGHQLRIMP T0547 414 :KKAILLLGD 3llxA 345 :NHACATAAM T0547 423 :K 3llxA 355 :P T0547 439 :RY 3llxA 356 :VY T0547 482 :TCDSDGEISY 3llxA 359 :VLMSDGSHNT Number of specific fragments extracted= 32 number of extra gaps= 5 total=24640 Will force an alignment to be made, even if fragment is small Number of alignments=1103 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A30 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 31 :IIDIVKE 3llxA 4 :APDWIAH T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 11 :PDTPYLLIDEAKLKSNINYLKQRVESL T0547 78 :GFN 3llxA 38 :GSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNE 3llxA 63 :APATVSTLAEAEAYAKAGYT T0547 127 :APITV 3llxA 83 :DLLYA T0547 132 :NGF 3llxA 89 :GIA T0547 135 :KDRELINIGF 3llxA 93 :AKLKRVAALR T0547 148 :EMGHNITLTIEGLNELEAIIDIAKE 3llxA 103 :QQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVR 3llxA 128 :FGQDFSVFIEID T0547 188 :SAGV 3llxA 140 :SDDH T0547 203 :KFGLTSTE 3llxA 144 :RGGIKPSD T0547 213 :EAVNLLKENK 3llxA 153 :KLLTIAKTLG T0547 224 :LEQFT 3llxA 163 :EHFTG T0547 230 :IHFHLGS 3llxA 168 :LMTHAGG T0547 237 :QITEIHPLKKALNE 3llxA 177 :ACNTEQGLKNFAKQ T0547 251 :AGNIYTELRKMGA 3llxA 195 :VRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVE 3llxA 217 :TPTAH T0547 306 :IAEQKKD 3llxA 222 :FGEDFSD T0547 316 :DIFIESGRFVAAN 3llxA 229 :ISEVRAGVYTTFD T0547 329 :HAVLIAPVLE 3llxA 256 :AMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKK 3llxA 274 :LTDS T0547 354 :QNPKLIDELYDLYKSI 3llxA 279 :WMALSRDSGTAGQNRD T0547 370 :KPSN 3llxA 306 :SVLD T0547 378 :LHDSID 3llxA 310 :GLCVNS T0547 386 :ESILTLFDLGYVDLQDRSNAEILTHLI 3llxA 318 :QEHGVIELSDAYQLEDFPVGHQLRIMP T0547 414 :KKAILLLGD 3llxA 345 :NHACATAAM T0547 423 :KQ 3llxA 355 :PV Number of specific fragments extracted= 31 number of extra gaps= 5 total=24671 Will force an alignment to be made, even if fragment is small Number of alignments=1104 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 34 :IVKE 3llxA 7 :WIAH T0547 43 :YKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 11 :PDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAVGIA T0547 135 :KDRELINIGF 3llxA 93 :AKLKRVAALR T0547 148 :EMGHNITLTIEGLNELEAIIDIAKE 3llxA 103 :QQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRV 3llxA 128 :FGQDFSVFIEI T0547 187 :HSAGV 3llxA 139 :DSDDH T0547 203 :KFGLTSTEL 3llxA 144 :RGGIKPSDS T0547 213 :EAVNLLKENK 3llxA 153 :KLLTIAKTLG T0547 224 :LEQFT 3llxA 163 :EHFTG T0547 230 :IHFHLGS 3llxA 168 :LMTHAGG T0547 237 :QITEIHPL 3llxA 177 :ACNTEQGL T0547 245 :KKALNEAGNIYTELRKMGA 3llxA 189 :KQECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEYSQFKNEK 3llxA 217 :TPTAHFGEDFSDI T0547 288 :RNY 3llxA 230 :SEV T0547 291 :TLRE 3llxA 241 :DLVM T0547 308 :EQKKDLE 3llxA 245 :KNIGVCD T0547 322 :G 3llxA 252 :F T0547 326 :AANHAVLIAPVLE 3llxA 253 :SHIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKK 3llxA 274 :LTDS T0547 354 :QNPKLIDELYDLYK 3llxA 279 :WMALSRDSGTAGQN T0547 369 :IKPSNALE 3llxA 293 :RDFGYGQV T0547 377 :YLHDSID 3llxA 309 :DGLCVNS T0547 386 :ESILTLFDLGYVDLQDRSNAEILTHLI 3llxA 318 :QEHGVIELSDAYQLEDFPVGHQLRIMP T0547 414 :KKAILLLGD 3llxA 345 :NHACATAAM T0547 423 :KQN 3llxA 355 :PVY T0547 482 :TCDSDGEISY 3llxA 359 :VLMSDGSHNT Number of specific fragments extracted= 32 number of extra gaps= 5 total=24703 Will force an alignment to be made, even if fragment is small Number of alignments=1105 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 9 :AHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNL 3llxA 48 :LRTLEAAGYL T0547 101 :GK 3llxA 61 :KS T0547 106 :YGLEAGSKAELLLAMAYNNE 3llxA 63 :APATVSTLAEAEAYAKAGYT T0547 127 :APITV 3llxA 83 :DLLYA T0547 132 :NGF 3llxA 89 :GIA T0547 135 :KDRELINIGF 3llxA 93 :AKLKRVAALR T0547 148 :EMGHNITLTIEGLNELEAIIDIAKE 3llxA 103 :QQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRL 3llxA 128 :FGQDFSVFIEIDS T0547 189 :AGV 3llxA 141 :DDH T0547 203 :KFGLTST 3llxA 144 :RGGIKPS T0547 213 :EAVNLLKENK 3llxA 153 :KLLTIAKTLG T0547 224 :LEQFT 3llxA 163 :EHFTG T0547 230 :IHFHLGS 3llxA 168 :LMTHAGG T0547 237 :QITEIHPLKKALNE 3llxA 177 :ACNTEQGLKNFAKQ T0547 251 :AGNIYTELRKMGA 3llxA 195 :VRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVE 3llxA 217 :TPTAH T0547 306 :IAEQKKDLE 3llxA 222 :FGEDFSDIS T0547 318 :FIESGRFVAAN 3llxA 231 :EVRAGVYTTFD T0547 329 :HAVLIAPVLE 3llxA 256 :AMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKK 3llxA 274 :LTDS T0547 363 :YDLYKSIKPSNALE 3llxA 279 :WMALSRDSGTAGQN T0547 377 :YLHDSID 3llxA 309 :DGLCVNS T0547 386 :ESILTLFDLGYVDLQDRSNAEILTHLI 3llxA 318 :QEHGVIELSDAYQLEDFPVGHQLRIMP T0547 414 :KKAILLLGD 3llxA 345 :NHACATAAM T0547 423 :K 3llxA 355 :P T0547 440 :YL 3llxA 356 :VY T0547 481 :ITCDSDGEISYS 3llxA 358 :HVLMSDGSHNTW Number of specific fragments extracted= 32 number of extra gaps= 5 total=24735 Will force an alignment to be made, even if fragment is small Number of alignments=1106 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)H384 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L385 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 8 :IAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNE 3llxA 63 :APATVSTLAEAEAYAKAGYT T0547 127 :APITV 3llxA 83 :DLLYA T0547 132 :NGF 3llxA 89 :GIA T0547 135 :KDRELINIGF 3llxA 93 :AKLKRVAALR T0547 148 :EMGHNITLTIEGLNELEAIIDIAKE 3llxA 103 :QQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRV 3llxA 128 :FGQDFSVFIEI T0547 187 :HSAGV 3llxA 139 :DSDDH T0547 203 :KFGLTST 3llxA 144 :RGGIKPS T0547 213 :EAVNLLKENK 3llxA 153 :KLLTIAKTLG T0547 224 :LEQFT 3llxA 163 :EHFTG T0547 230 :IHFHLGS 3llxA 168 :LMTHAGG T0547 237 :QITEIHPL 3llxA 177 :ACNTEQGL T0547 245 :KKALNEAGNIYTELRKMGA 3llxA 189 :KQECDAVRIARNNLETAGI T0547 265 :NLKAIN 3llxA 208 :HCAITS T0547 274 :GLAVEYSQ 3llxA 217 :TPTAHFGE T0547 312 :DLEPDIFIESGRFVAAN 3llxA 225 :DFSDISEVRAGVYTTFD T0547 329 :HAVLIAPVLE 3llxA 256 :AMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 350 :ILKK 3llxA 274 :LTDS T0547 354 :QNPKLIDELYDLYKSIKPSN 3llxA 279 :WMALSRDSGTAGQNRDFGYG T0547 377 :YLHDSID 3llxA 309 :DGLCVNS T0547 386 :ESILTLFDLGYVDLQDRSNAEILTHLI 3llxA 318 :QEHGVIELSDAYQLEDFPVGHQLRIMP T0547 414 :KKAILLLGD 3llxA 345 :NHACATAAM T0547 438 :ERY 3llxA 355 :PVY T0547 481 :ITCDSDGEISY 3llxA 358 :HVLMSDGSHNT Number of specific fragments extracted= 29 number of extra gaps= 5 total=24764 Will force an alignment to be made, even if fragment is small Number of alignments=1107 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)V35 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)P91 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)F93 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)E343 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)Y344 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)V397 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 Warning: unaligning (T0547)M450 because last residue in template chain is (3llxA)W375 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 4 :APDWIAHPDTPYLLIDEAKLKSNINYLKQRVESL T0547 78 :GFN 3llxA 38 :GSH T0547 89 :QY 3llxA 43 :PH T0547 94 :VKNLVKLGK 3llxA 48 :LRTLEAAGY T0547 103 :DYNYGLEAGSKAELLLAMAYNNE 3llxA 60 :SKSAPATVSTLAEAEAYAKAGYT T0547 128 :PITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 83 :DLLYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSAGVGI 3llxA 128 :FGQDFSVFIEIDSDDHRGGI T0547 198 :GGINS 3llxA 148 :KPSDS T0547 213 :EAVNLLKENK 3llxA 153 :KLLTIAKTLG T0547 225 :EQFTMIHFHLGSQIT 3llxA 163 :EHFTGLMTHAGGSYA T0547 240 :EIHPLKKALNEAGNIYTELRKMGAKNLKAIN 3llxA 183 :GLKNFAKQECDAVRIARNNLETAGIHCAITS T0547 275 :LAVEYSQFK 3llxA 217 :TPTAHFGED T0547 285 :EKS 3llxA 226 :FSD T0547 292 :LREYANDVVFILKNIAEQKKD 3llxA 229 :ISEVRAGVYTTFDLVMKNIGV T0547 327 :ANHAVLIAPVLELFSQ 3llxA 250 :CDFSHIAMSVVTTVIG T0547 345 :AE 3llxA 270 :KN T0547 349 :LILKKQNPKLIDELY 3llxA 274 :LTDSGWMALSRDSGT T0547 373 :NALEYLHDSIDHLESILTLFDLGY 3llxA 292 :NRDFGYGQVCKIDGSVLDGLCVNS T0547 399 :LQDR 3llxA 318 :QEHG T0547 403 :SNAEILTHLITKKAILLLGDKQ 3llxA 323 :IELSDAYQLEDFPVGHQLRIMP T0547 425 :NPADLLAIQDEVQERYLVNFSLFQS 3llxA 350 :TAAMHPVYHVLMSDGSHNTWQRITG Number of specific fragments extracted= 21 number of extra gaps= 5 total=24785 Will force an alignment to be made, even if fragment is small Number of alignments=1108 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)Y4 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L430 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 Warning: unaligning (T0547)Q554 because last residue in template chain is (3llxA)W375 T0547 25 :YE 3llxA 4 :AP T0547 38 :LRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 6 :DWIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKN 3llxA 48 :LRTLEAAGY T0547 106 :YGLEAGSKAELLLAMAYNNEG 3llxA 63 :APATVSTLAEAEAYAKAGYTD T0547 129 :ITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 84 :LLYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSAGVG 3llxA 128 :FGQDFSVFIEIDSDDHRGG T0547 206 :LTS 3llxA 147 :IKP T0547 215 :VNLLKENK 3llxA 154 :LLTIAKTL T0547 224 :LEQFTMIHFHLG 3llxA 162 :GEHFTGLMTHAG T0547 236 :SQITEIHPLKKALNEAGNIYTELRKM 3llxA 180 :TEQGLKNFAKQECDAVRIARNNLETA T0547 263 :AKNLKAIN 3llxA 206 :GIHCAITS T0547 274 :GLAVEYSQFKNEKSR 3llxA 228 :DISEVRAGVYTTFDL T0547 293 :REY 3llxA 243 :VMK T0547 309 :QKKDLEP 3llxA 246 :NIGVCDF T0547 326 :AANHAVLIAPVLE 3llxA 253 :SHIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 349 :LILKK 3llxA 274 :LTDSG T0547 367 :KSIKP 3llxA 279 :WMALS T0547 373 :NALEYLHD 3llxA 284 :RDSGTAGQ T0547 381 :SIDHL 3llxA 293 :RDFGY T0547 395 :GYVDLQDR 3llxA 298 :GQVCKIDG T0547 403 :SNAE 3llxA 307 :VLDG T0547 424 :QNPAD 3llxA 311 :LCVNS T0547 437 :QERYLVNFSLFQSMPDF 3llxA 318 :QEHGVIELSDAYQLEDF T0547 500 :HDVDVEK 3llxA 340 :LRIMPNH T0547 523 :LGMKHNLFT 3llxA 347 :ACATAAMHP T0547 536 :AIISINEKG 3llxA 356 :VYHVLMSDG T0547 545 :YEVEGIIEA 3llxA 366 :HNTWQRITG Number of specific fragments extracted= 30 number of extra gaps= 5 total=24815 Will force an alignment to be made, even if fragment is small Number of alignments=1109 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)E26 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)L375 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 Warning: unaligning (T0547)Q554 because last residue in template chain is (3llxA)W375 T0547 36 :KELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 4 :APDWIAHPDTPYLLIDEAKLKSNINYLKQRVESL T0547 78 :GFN 3llxA 38 :GSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNE 3llxA 63 :APATVSTLAEAEAYAKAGYT T0547 128 :PITVNGFKDRELI 3llxA 83 :DLLYAVGIAPAKL T0547 141 :NIGFIAAEM 3llxA 98 :VAALRQQGI T0547 152 :NITLTIEGLNELEAIIDIAKE 3llxA 107 :NLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSAGV 3llxA 128 :FGQDFSVFIEIDSDDHRG T0547 205 :GLTSTE 3llxA 146 :GIKPSD T0547 211 :LIEAVNLL 3llxA 154 :LLTIAKTL T0547 222 :K 3llxA 162 :G T0547 225 :EQFTMIHFHLG 3llxA 163 :EHFTGLMTHAG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMG 3llxA 177 :ACNTEQGLKNFAKQECDAVRIARNNL T0547 263 :AKNLKAIN 3llxA 206 :GIHCAITS T0547 274 :GLAV 3llxA 217 :TPTA T0547 290 :Y 3llxA 221 :H T0547 306 :IAEQKKD 3llxA 222 :FGEDFSD T0547 318 :FIE 3llxA 229 :ISE T0547 321 :SGRFVAA 3llxA 234 :AGVYTTF T0547 328 :NHAVLIAPVLE 3llxA 255 :IAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 345 :AENKLILKKQNP 3llxA 279 :WMALSRDSGTAG T0547 358 :LID 3llxA 291 :QNR T0547 373 :NA 3llxA 314 :NS T0547 377 :YLHDSIDHLE 3llxA 318 :QEHGVIELSD T0547 398 :DLQDR 3llxA 328 :AYQLE T0547 403 :SNAEILTHLITKKAILLLGDK 3llxA 334 :FPVGHQLRIMPNHACATAAMH T0547 534 :TEAIISINEKGYEVEGIIEA 3llxA 355 :PVYHVLMSDGSHNTWQRITG Number of specific fragments extracted= 29 number of extra gaps= 4 total=24844 Will force an alignment to be made, even if fragment is small Number of alignments=1110 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)K28 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)E435 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)V436 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 Warning: unaligning (T0547)Q554 because last residue in template chain is (3llxA)W375 T0547 29 :PA 3llxA 4 :AP T0547 38 :LRDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 6 :DWIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAVGIAPAKLKRVAALRQQGIN T0547 153 :ITLTIEGLNELEAIIDIAKE 3llxA 108 :LHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSAGV 3llxA 128 :FGQDFSVFIEIDSDDHRG T0547 205 :GLTSTELIE 3llxA 146 :GIKPSDSKL T0547 216 :NLLKENK 3llxA 155 :LTIAKTL T0547 224 :LEQFTMIHFHLG 3llxA 162 :GEHFTGLMTHAG T0547 236 :SQITEIHPLKKALNEAGNIYTELRKM 3llxA 180 :TEQGLKNFAKQECDAVRIARNNLETA T0547 263 :AKNLKAIN 3llxA 206 :GIHCAITS T0547 283 :KNEKSRNY 3llxA 230 :SEVRAGVY T0547 291 :TLREY 3llxA 241 :DLVMK T0547 309 :QKKDLE 3llxA 246 :NIGVCD T0547 325 :VAANHAVLIAPVLE 3llxA 252 :FSHIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 347 :N 3llxA 274 :L T0547 350 :ILKKQ 3llxA 275 :TDSGW T0547 393 :DLGYVDLQDR 3llxA 280 :MALSRDSGTA T0547 408 :LTHLITKKAILLLGDKQNPAD 3llxA 291 :QNRDFGYGQVCKIDGSVLDGL T0547 431 :AIQD 3llxA 312 :CVNS T0547 437 :QERYLVNFSLFQSMPDF 3llxA 318 :QEHGVIELSDAYQLEDF T0547 455 :GLEQNFPIMPLDRLD 3llxA 335 :PVGHQLRIMPNHACA T0547 526 :KHNLFT 3llxA 350 :TAAMHP T0547 536 :AIISINEKG 3llxA 356 :VYHVLMSDG T0547 545 :YEVEGIIEA 3llxA 366 :HNTWQRITG Number of specific fragments extracted= 28 number of extra gaps= 5 total=24872 Will force an alignment to be made, even if fragment is small Number of alignments=1111 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)G5 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)Q554 because last residue in template chain is (3llxA)W375 T0547 6 :IDI 3llxA 4 :APD T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 7 :WIAHPDTPYLLIDEAKLKSNINYLKQRVESL T0547 78 :GFN 3llxA 38 :GSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNL 3llxA 48 :LRTLEAAGYL T0547 101 :GKDYNYGLEAGSKAELLLAMAYNN 3llxA 58 :LDSKSAPATVSTLAEAEAYAKAGY T0547 127 :APITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 82 :TDLLYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSAGVG 3llxA 128 :FGQDFSVFIEIDSDDHRGG T0547 206 :LTS 3llxA 147 :IKP T0547 209 :TELIEAVNLL 3llxA 152 :SKLLTIAKTL T0547 224 :LEQFTMIHFHLG 3llxA 162 :GEHFTGLMTHAG T0547 236 :SQITEIHPLKKALNEAGNIYTELRKM 3llxA 176 :YACNTEQGLKNFAKQECDAVRIARNN T0547 262 :GAKNLKAIN 3llxA 205 :AGIHCAITS T0547 291 :TLREYA 3llxA 241 :DLVMKN T0547 310 :KKDLEP 3llxA 247 :IGVCDF T0547 328 :NHAVLIAPVLE 3llxA 255 :IAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 349 :LILKK 3llxA 274 :LTDSG T0547 363 :YDLYKSIKPS 3llxA 279 :WMALSRDSGT T0547 397 :VDLQDR 3llxA 327 :DAYQLE T0547 403 :SNAEILTHLITKKAILLLGD 3llxA 334 :FPVGHQLRIMPNHACATAAM T0547 533 :PTEAIISINEKGYEVEGIIEA 3llxA 354 :HPVYHVLMSDGSHNTWQRITG Number of specific fragments extracted= 22 number of extra gaps= 4 total=24894 Will force an alignment to be made, even if fragment is small Number of alignments=1112 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)Y4 because first residue in template chain is (3llxA)S3 Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)S555 because last residue in template chain is (3llxA)W375 T0547 6 :ID 3llxA 4 :AP T0547 38 :LRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 6 :DWIAHPDTPYLLIDEAKLKSNINYLKQRVESL T0547 78 :GFN 3llxA 38 :GSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLG 3llxA 48 :LRTLEAAGYLLDSK T0547 105 :NYGLEAGSKAELLLAMAYNNE 3llxA 62 :SAPATVSTLAEAEAYAKAGYT T0547 128 :PITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 83 :DLLYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSAGVGI 3llxA 128 :FGQDFSVFIEIDSDDHRGGI T0547 198 :GGINS 3llxA 148 :KPSDS T0547 214 :AVNLLKENK 3llxA 153 :KLLTIAKTL T0547 224 :LEQFTMIHFHLGSQIT 3llxA 162 :GEHFTGLMTHAGGSYA T0547 240 :EIHPLKKALNEAGN 3llxA 184 :LKNFAKQECDAVRI T0547 255 :YTELRKMGAKNLKAIN 3llxA 198 :ARNNLETAGIHCAITS T0547 283 :KNEKSRNYTLREY 3llxA 233 :RAGVYTTFDLVMK T0547 309 :QKKDLE 3llxA 246 :NIGVCD T0547 325 :VAANHAVLIAPVLE 3llxA 252 :FSHIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 349 :LILKKQNPKLIDELYDLYKSIKPS 3llxA 274 :LTDSGWMALSRDSGTAGQNRDFGY T0547 395 :GYVDLQDR 3llxA 325 :LSDAYQLE T0547 403 :SNAEILTHLITKKAI 3llxA 334 :FPVGHQLRIMPNHAC T0547 432 :IQD 3llxA 349 :ATA T0547 528 :NLF 3llxA 352 :AMH T0547 535 :EAIISINEKGYEVEGIIEAQ 3llxA 355 :PVYHVLMSDGSHNTWQRITG Number of specific fragments extracted= 23 number of extra gaps= 4 total=24917 Will force an alignment to be made, even if fragment is small Number of alignments=1113 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)P91 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)F93 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 T0547 38 :LRDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 6 :DWIAHPDTPYLLIDEAKLKSNINYLKQRVESL T0547 78 :GFN 3llxA 38 :GSH T0547 89 :QY 3llxA 43 :PH T0547 94 :VKNLVKLGK 3llxA 48 :LRTLEAAGY T0547 103 :DYNYGLEAGSKAELLLAMAYNNE 3llxA 60 :SKSAPATVSTLAEAEAYAKAGYT T0547 128 :PITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 83 :DLLYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSAGVGI 3llxA 128 :FGQDFSVFIEIDSDDHRGGI T0547 198 :GGINS 3llxA 148 :KPSDS T0547 213 :EAVNLLKENK 3llxA 153 :KLLTIAKTLG T0547 225 :EQFTMIHFHLGSQIT 3llxA 163 :EHFTGLMTHAGGSYA Number of specific fragments extracted= 10 number of extra gaps= 1 total=24927 Will force an alignment to be made, even if fragment is small Number of alignments=1114 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)L430 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 7 :WIAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKN 3llxA 48 :LRTLEAAGY T0547 106 :YGLEAGSKAELLLAMAYNNEG 3llxA 63 :APATVSTLAEAEAYAKAGYTD T0547 129 :ITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 84 :LLYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSAGVG 3llxA 128 :FGQDFSVFIEIDSDDHRGG T0547 206 :LTS 3llxA 147 :IKP T0547 215 :VNLLKENK 3llxA 154 :LLTIAKTL T0547 224 :LEQFTMIHFHLG 3llxA 162 :GEHFTGLMTHAG T0547 236 :SQITEIHPLKKALNEAGNIYTELRKM 3llxA 180 :TEQGLKNFAKQECDAVRIARNNLETA T0547 263 :AKNLKAIN 3llxA 206 :GIHCAITS T0547 274 :GLAVEYSQFKNEKSR 3llxA 228 :DISEVRAGVYTTFDL T0547 293 :REY 3llxA 243 :VMK T0547 309 :QKKDLEP 3llxA 246 :NIGVCDF T0547 326 :AANHAVLIAPVLE 3llxA 253 :SHIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 349 :LILKK 3llxA 274 :LTDSG T0547 367 :KSIKP 3llxA 279 :WMALS T0547 373 :NALEYLHD 3llxA 284 :RDSGTAGQ T0547 381 :SIDHL 3llxA 293 :RDFGY T0547 395 :GYVDLQDR 3llxA 298 :GQVCKIDG T0547 403 :SNAE 3llxA 307 :VLDG T0547 424 :QNPAD 3llxA 311 :LCVNS T0547 437 :QERYLVNFSLFQSMPDF 3llxA 318 :QEHGVIELSDAYQLEDF T0547 500 :HDVDVEK 3llxA 340 :LRIMPNH T0547 523 :LGMKHNLFT 3llxA 347 :ACATAAMHP T0547 536 :AIISINEKGYEVEGII 3llxA 356 :VYHVLMSDGSHNTWQR Number of specific fragments extracted= 28 number of extra gaps= 5 total=24955 Will force an alignment to be made, even if fragment is small Number of alignments=1115 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)L375 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 39 :RDDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 7 :WIAHPDTPYLLIDEAKLKSNINYLKQRVESL T0547 78 :GFN 3llxA 38 :GSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNE 3llxA 63 :APATVSTLAEAEAYAKAGYT T0547 128 :PITVNGFKDRELI 3llxA 83 :DLLYAVGIAPAKL T0547 141 :NIGFIAAEM 3llxA 98 :VAALRQQGI T0547 152 :NITLTIEGLNELEAIIDIAKE 3llxA 107 :NLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSAGV 3llxA 128 :FGQDFSVFIEIDSDDHRG T0547 205 :GLTSTE 3llxA 146 :GIKPSD T0547 211 :LIEAVNLL 3llxA 154 :LLTIAKTL T0547 222 :K 3llxA 162 :G T0547 225 :EQFTMIHFHLG 3llxA 163 :EHFTGLMTHAG T0547 237 :QITEIHPLKKALNEAGNIYTELRKMG 3llxA 177 :ACNTEQGLKNFAKQECDAVRIARNNL T0547 263 :AKNLKAIN 3llxA 206 :GIHCAITS T0547 274 :GLAV 3llxA 217 :TPTA T0547 290 :Y 3llxA 221 :H T0547 306 :IAEQKKD 3llxA 222 :FGEDFSD T0547 318 :FIE 3llxA 229 :ISE T0547 321 :SGRFVAA 3llxA 234 :AGVYTTF T0547 328 :NHAVLIAPVLE 3llxA 255 :IAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 345 :AENKLILKKQNP 3llxA 279 :WMALSRDSGTAG T0547 358 :LID 3llxA 291 :QNR T0547 373 :NA 3llxA 314 :NS T0547 377 :YLHDSIDHLE 3llxA 318 :QEHGVIELSD T0547 398 :DLQDR 3llxA 328 :AYQLE T0547 403 :SNAEILTHLITKKAILLLGDKQ 3llxA 334 :FPVGHQLRIMPNHACATAAMHP Number of specific fragments extracted= 28 number of extra gaps= 4 total=24983 Will force an alignment to be made, even if fragment is small Number of alignments=1116 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 Warning: unaligning (T0547)E435 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)S317 Warning: unaligning (T0547)V436 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S317 T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNFNK 3llxA 8 :IAHPDTPYLLIDEAKLKSNINYLKQRVES T0547 77 :GGFN 3llxA 37 :LGSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLGK 3llxA 48 :LRTLEAAGYLLDSKS T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 3llxA 63 :APATVSTLAEAEAYAKAGYTDLLYAVGIAPAKLKRVAALRQQGIN T0547 153 :ITLTIEGLNELEAIIDIAKE 3llxA 108 :LHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSAGV 3llxA 128 :FGQDFSVFIEIDSDDHRG T0547 205 :GLTSTELIE 3llxA 146 :GIKPSDSKL T0547 216 :NLLKENK 3llxA 155 :LTIAKTL T0547 224 :LEQFTMIHFHLG 3llxA 162 :GEHFTGLMTHAG T0547 236 :SQITEIHPLKKALNEAGNIYTELRKM 3llxA 180 :TEQGLKNFAKQECDAVRIARNNLETA T0547 263 :AKNLKAIN 3llxA 206 :GIHCAITS T0547 283 :KNEKSRNY 3llxA 230 :SEVRAGVY T0547 291 :TLREY 3llxA 241 :DLVMK T0547 309 :QKKDLE 3llxA 246 :NIGVCD T0547 325 :VAANHAVLIAPVLE 3llxA 252 :FSHIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 347 :N 3llxA 274 :L T0547 350 :ILKKQ 3llxA 275 :TDSGW T0547 393 :DLGYVDLQDR 3llxA 280 :MALSRDSGTA T0547 408 :LTHLITKKAILLLGDKQNPAD 3llxA 291 :QNRDFGYGQVCKIDGSVLDGL T0547 431 :AIQD 3llxA 312 :CVNS T0547 437 :QERYLVNFSLFQSMPDF 3llxA 318 :QEHGVIELSDAYQLEDF T0547 455 :GLEQNFPIMPLDRLD 3llxA 335 :PVGHQLRIMPNHACA T0547 526 :KHNLFT 3llxA 350 :TAAMHP T0547 536 :AIISINEKG 3llxA 356 :VYHVLMSDG T0547 545 :YEVEGIIEA 3llxA 366 :HNTWQRITG Number of specific fragments extracted= 27 number of extra gaps= 5 total=25010 Will force an alignment to be made, even if fragment is small Number of alignments=1117 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 T0547 41 :DGYKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 9 :AHPDTPYLLIDEAKLKSNINYLKQRVESL T0547 78 :GFN 3llxA 38 :GSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNL 3llxA 48 :LRTLEAAGYL T0547 101 :GKDYNYGLEAGSKAELLLAMAYNN 3llxA 58 :LDSKSAPATVSTLAEAEAYAKAGY T0547 127 :APITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 82 :TDLLYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSAGVG 3llxA 128 :FGQDFSVFIEIDSDDHRGG T0547 206 :LTS 3llxA 147 :IKP T0547 209 :TELIEAVNLL 3llxA 152 :SKLLTIAKTL T0547 224 :LEQFTMIHFHLG 3llxA 162 :GEHFTGLMTHAG T0547 236 :SQITEIHPLKKALNEAGNIYTELRKM 3llxA 176 :YACNTEQGLKNFAKQECDAVRIARNN T0547 262 :GAKNLKAIN 3llxA 205 :AGIHCAITS T0547 291 :TLREYA 3llxA 241 :DLVMKN T0547 310 :KKDLEP 3llxA 247 :IGVCDF T0547 328 :NHAVLIAPVLE 3llxA 255 :IAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 349 :LILKK 3llxA 274 :LTDSG T0547 363 :YDLYKSIKPS 3llxA 279 :WMALSRDSGT T0547 397 :VDLQDR 3llxA 327 :DAYQLE T0547 403 :SNAEILTHLITKKAILLLGD 3llxA 334 :FPVGHQLRIMPNHACATAAM T0547 533 :PTEAIISINEKGYEVEGIIEA 3llxA 354 :HPVYHVLMSDGSHNTWQRITG Number of specific fragments extracted= 21 number of extra gaps= 4 total=25031 Will force an alignment to be made, even if fragment is small Number of alignments=1118 # 3llxA read from all-align.a2m # found chain 3llxA in template set Warning: unaligning (T0547)A81 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)R42 Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)R42 Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3llxA)T47 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3llxA)T47 Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)G215 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)G215 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)S216 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)N267 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)N267 Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE in next template residue (3llxA)L273 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE at template residue (3llxA)L273 T0547 40 :DDGYKGPLLLRFPHLIQKQIENIYGNFNKA 3llxA 8 :IAHPDTPYLLIDEAKLKSNINYLKQRVESL T0547 78 :GFN 3llxA 38 :GSH T0547 83 :YP 3llxA 43 :PH T0547 88 :NQYPGFVKNLVKLG 3llxA 48 :LRTLEAAGYLLDSK T0547 105 :NYGLEAGSKAELLLAMAYNNE 3llxA 62 :SAPATVSTLAEAEAYAKAGYT T0547 128 :PITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 3llxA 83 :DLLYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAE T0547 174 :FKPKPNIGLRVRLHSAGVGI 3llxA 128 :FGQDFSVFIEIDSDDHRGGI T0547 198 :GGINS 3llxA 148 :KPSDS T0547 214 :AVNLLKENK 3llxA 153 :KLLTIAKTL T0547 224 :LEQFTMIHFHLGSQIT 3llxA 162 :GEHFTGLMTHAGGSYA T0547 240 :EIHPLKKALNEAGN 3llxA 184 :LKNFAKQECDAVRI T0547 255 :YTELRKMGAKNLKAIN 3llxA 198 :ARNNLETAGIHCAITS T0547 283 :KNEKSRNYTLREY 3llxA 233 :RAGVYTTFDLVMK T0547 309 :QKKDLE 3llxA 246 :NIGVCD T0547 325 :VAANHAVLIAPVLE 3llxA 252 :FSHIAMSVVTTVIG T0547 341 :SQEY 3llxA 268 :KEKN T0547 349 :LILKKQNPKLIDELYDLYKSIKPS 3llxA 274 :LTDSGWMALSRDSGTAGQNRDFGY T0547 395 :GYVDLQDR 3llxA 325 :LSDAYQLE T0547 403 :SNAEILTHLITKKAI 3llxA 334 :FPVGHQLRIMPNHAC T0547 432 :IQD 3llxA 349 :ATA T0547 528 :NLF 3llxA 352 :AMH T0547 535 :EAIISINEKGYEVEGIIE 3llxA 355 :PVYHVLMSDGSHNTWQRI Number of specific fragments extracted= 22 number of extra gaps= 4 total=25053 Will force an alignment to be made, even if fragment is small Number of alignments=1119 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)G10 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)G549 because last residue in template chain is (7odcA)K418 T0547 11 :NENFIIKNGKVCIN 7odcA 3 :SFTKDEFDCHILDE T0547 28 :KPAIIDIVKEL 7odcA 17 :GFTAKDILDQK T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYA T0547 133 :GFKDRELINI 7odcA 113 :PCKQVSQIKY T0547 146 :AAEMGHN 7odcA 123 :AASNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LE 7odcA 189 :ID T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 191 :VIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEY 7odcA 228 :SMHLLDIGGGFPGSE T0547 287 :SRNYTLREYANDVVFILKNIAEQKKDLE 7odcA 243 :DTKLKFEEITSVINPALDKYFPSDSGVR T0547 317 :IFIESGRFVAANHAVLIAPVLELFSQ 7odcA 271 :IIAEPGRYYVASAFTLAVNIIAKKTV T0547 436 :VQERYLVNFSLFQSMPDFW 7odcA 312 :QTFMYYVNDGVYGSFNCIL T0547 456 :LEQNFPIMPLDRLD 7odcA 331 :YDHAHVKALLQKRP T0547 470 :EEPTRSASIWDITCDSDGEI 7odcA 347 :DEKYYSSSIWGPTCDGLDRI T0547 494 :DKPLFLHDVDVEK 7odcA 367 :VERCNLPEMHVGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 7odcA 380 :WMLFENMGAYTVAAASTFNGFQRPNIYYVM T0547 541 :NEKGYEVE 7odcA 410 :SRPMWQLM Number of specific fragments extracted= 21 number of extra gaps= 0 total=25074 Will force an alignment to be made, even if fragment is small Number of alignments=1120 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)D41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 24 :NYEKKPAIIDIVKEL 7odcA 13 :ILDEGFTAKDILDQK T0547 42 :GY 7odcA 37 :KD T0547 46 :PLLLRFPHLIQKQIENIYGNF 7odcA 39 :AFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVN 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYA T0547 133 :GFKDRELINI 7odcA 113 :PCKQVSQIKY T0547 146 :AAEMGHN 7odcA 123 :AASNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LE 7odcA 189 :ID T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 191 :VIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEY 7odcA 228 :SMHLLDIGGGFPGSE T0547 287 :SRNYTLREYANDVVFILKNIAEQKKDLE 7odcA 243 :DTKLKFEEITSVINPALDKYFPSDSGVR T0547 317 :IFIESGRFVAANHAVLIAPVLELFSQ 7odcA 271 :IIAEPGRYYVASAFTLAVNIIAKKTV T0547 436 :VQERYLVNFSLFQSMPDFW 7odcA 312 :QTFMYYVNDGVYGSFNCIL T0547 456 :LEQNFPIMPLDRLD 7odcA 331 :YDHAHVKALLQKRP T0547 470 :EEPTRSASIWDITCDSDGEI 7odcA 347 :DEKYYSSSIWGPTCDGLDRI T0547 494 :DKPLFLHDVDVEK 7odcA 367 :VERCNLPEMHVGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 7odcA 380 :WMLFENMGAYTVAAASTFNGFQRPNIYYVM T0547 541 :NEKGY 7odcA 410 :SRPMW Number of specific fragments extracted= 21 number of extra gaps= 0 total=25095 Will force an alignment to be made, even if fragment is small Number of alignments=1121 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)G5 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)V436 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)E552 because last residue in template chain is (7odcA)K418 T0547 6 :IDIWGNENFIIKNGKVCI 7odcA 3 :SFTKDEFDCHILDEGFTA T0547 32 :IDIVKELR 7odcA 21 :KDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIY T0547 132 :NGFKDRELINIGF 7odcA 112 :NPCKQVSQIKYAA T0547 148 :EMGHN 7odcA 125 :SNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LE 7odcA 189 :ID T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 191 :VIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEYSQ 7odcA 228 :SMHLLDIGGGFPGSEDT T0547 289 :NYTLREYANDVVFILKNIAEQ 7odcA 245 :KLKFEEITSVINPALDKYFPS T0547 312 :DLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 266 :DSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 437 :QERYL 7odcA 312 :QTFMY T0547 442 :VNFSLFQSMPDFW 7odcA 318 :VNDGVYGSFNCIL T0547 456 :LEQNFPIMPL 7odcA 331 :YDHAHVKALL T0547 466 :DRLDEEPTRSASIWDITCDSDGEISYS 7odcA 343 :RPKPDEKYYSSSIWGPTCDGLDRIVER T0547 497 :LFLHDVDVEK 7odcA 370 :CNLPEMHVGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 7odcA 380 :WMLFENMGAYTVAAASTFNGFQRPNIYYVM T0547 542 :EKGYEV 7odcA 410 :SRPMWQ T0547 550 :II 7odcA 416 :LM Number of specific fragments extracted= 23 number of extra gaps= 0 total=25118 Will force an alignment to be made, even if fragment is small Number of alignments=1122 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)V436 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 10 :GNENFIIKNGKVCI 7odcA 7 :DEFDCHILDEGFTA T0547 32 :IDIVKELR 7odcA 21 :KDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIY T0547 132 :NGFKDRELINIGF 7odcA 112 :NPCKQVSQIKYAA T0547 148 :EMGHN 7odcA 125 :SNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LE 7odcA 189 :ID T0547 227 :FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 191 :VIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEYSQ 7odcA 228 :SMHLLDIGGGFPGSEDT T0547 289 :NYTLREYANDVVFILKNIAEQ 7odcA 245 :KLKFEEITSVINPALDKYFPS T0547 312 :DLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 266 :DSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 437 :QERYL 7odcA 312 :QTFMY T0547 442 :VNFSLFQSMPDFW 7odcA 318 :VNDGVYGSFNCIL T0547 456 :LEQNFPIMPL 7odcA 331 :YDHAHVKALL T0547 466 :DRLDEEPTRSASIWDITCDSDGEISYS 7odcA 343 :RPKPDEKYYSSSIWGPTCDGLDRIVER T0547 497 :LFLHDVDVEK 7odcA 370 :CNLPEMHVGD T0547 510 :FLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 7odcA 380 :WMLFENMGAYTVAAASTFNGFQRPNIYYVM Number of specific fragments extracted= 21 number of extra gaps= 0 total=25139 Will force an alignment to be made, even if fragment is small Number of alignments=1123 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)G10 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)L38 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)E548 because last residue in template chain is (7odcA)K418 T0547 11 :NENFIIKNGKVCINYEKKPAIID 7odcA 3 :SFTKDEFDCHILDEGFTAKDILD T0547 37 :E 7odcA 26 :Q T0547 39 :RD 7odcA 37 :KD T0547 46 :PLLLRFPHLIQKQIENIYGNFN 7odcA 39 :AFYVADLGDILKKHLRWLKALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 7odcA 61 :RVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYN 7odcA 85 :TGFDCASKTEIQLVQGLG T0547 124 :NEGAPITVNGFKDRELINIGF 7odcA 104 :PAERVIYANPCKQVSQIKYAA T0547 150 :GHNI 7odcA 125 :SNGV T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENKL 7odcA 170 :FGATLKTSRLLLERAKELNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK 7odcA 190 :DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFS T0547 266 :LKAINLGGGLAVEY 7odcA 229 :MHLLDIGGGFPGSE T0547 287 :SRNYTLREYANDVVFILKNIAE 7odcA 243 :DTKLKFEEITSVINPALDKYFP T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 265 :SDSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 436 :VQERYLVNFSLFQSMPDFW 7odcA 312 :QTFMYYVNDGVYGSFNCIL T0547 456 :LEQNFPIMPLDRL 7odcA 331 :YDHAHVKALLQKR T0547 469 :DEEPTRSASIWDITCDSDGEISYS 7odcA 346 :PDEKYYSSSIWGPTCDGLDRIVER T0547 497 :LFLHDVDV 7odcA 370 :CNLPEMHV T0547 508 :NYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEV 7odcA 378 :GDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLM Number of specific fragments extracted= 20 number of extra gaps= 0 total=25159 Will force an alignment to be made, even if fragment is small Number of alignments=1124 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)E435 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 7odcA 37 :KDAFYVADLGDILKKHLRWLKALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 7odcA 61 :RVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYN 7odcA 85 :TGFDCASKTEIQLVQGLG T0547 124 :NEGAPITVNGFKDRELINIGF 7odcA 104 :PAERVIYANPCKQVSQIKYAA T0547 150 :GHNI 7odcA 125 :SNGV T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENKL 7odcA 170 :FGATLKTSRLLLERAKELNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK 7odcA 190 :DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFS T0547 266 :LKAINLGGGLAVEY 7odcA 229 :MHLLDIGGGFPGSE T0547 287 :SRNYTLREYANDVVFILKNIAE 7odcA 243 :DTKLKFEEITSVINPALDKYFP T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 265 :SDSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 436 :VQERYLVNFSLFQSMPDFW 7odcA 312 :QTFMYYVNDGVYGSFNCIL T0547 456 :LEQNFPIMPLDRL 7odcA 331 :YDHAHVKALLQKR T0547 469 :DEEPTRSASIWDITCDSDGEISYS 7odcA 346 :PDEKYYSSSIWGPTCDGLDRIVER T0547 497 :LFLHDVDV 7odcA 370 :CNLPEMHV T0547 508 :NYFLGFFLVGAYQEVLGMKHNLFTHPTEAII 7odcA 378 :GDWMLFENMGAYTVAAASTFNGFQRPNIYYV Number of specific fragments extracted= 17 number of extra gaps= 0 total=25176 Will force an alignment to be made, even if fragment is small Number of alignments=1125 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)M2 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)D40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)S445 because last residue in template chain is (7odcA)K418 T0547 3 :DYGIDIWGNE 7odcA 3 :SFTKDEFDCH T0547 23 :I 7odcA 13 :I T0547 25 :YEKKPAIIDIVKELR 7odcA 14 :LDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQ T0547 139 :LINIGF 7odcA 117 :VSQIKY T0547 146 :AAEMGHNI 7odcA 123 :AASNGVQM T0547 155 :LTIEGLNELEAIIDIAKE 7odcA 131 :MTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENKL 7odcA 170 :FGATLKTSRLLLERAKELNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 190 :DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLA 7odcA 228 :SMHLLDIGGGFP T0547 282 :FKNEKSR 7odcA 240 :GSEDTKL T0547 291 :TLREYANDVVFILKNIAEQK 7odcA 247 :KFEEITSVINPALDKYFPSD T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 267 :SGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDE 7odcA 312 :QTFMYYVNDGVYGSFNC T0547 362 :LYDLYKSIKPS 7odcA 330 :LYDHAHVKALL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVER T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNF 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLM Number of specific fragments extracted= 20 number of extra gaps= 0 total=25196 Will force an alignment to be made, even if fragment is small Number of alignments=1126 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)N13 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)N443 because last residue in template chain is (7odcA)K418 T0547 14 :FIIKNG 7odcA 3 :SFTKDE T0547 25 :YEKKPAIIDIVKELRDD 7odcA 9 :FDCHILDEGFTAKDILD T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIGT T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 7odcA 86 :GFDCASKTEIQLVQGLGVPAERVIYANPCKQV T0547 140 :INIGF 7odcA 118 :SQIKY T0547 146 :AAEMGHNI 7odcA 123 :AASNGVQM T0547 155 :LTIEGLNELEAIIDIAKE 7odcA 131 :MTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENKL 7odcA 170 :FGATLKTSRLLLERAKELNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 190 :DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEY 7odcA 228 :SMHLLDIGGGFPGSE T0547 283 :KNEK 7odcA 243 :DTKL T0547 291 :TLREYANDVVFILKNIA 7odcA 247 :KFEEITSVINPALDKYF T0547 310 :KKDL 7odcA 265 :SDSG T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 269 :VRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDE 7odcA 312 :QTFMYYVNDGVYGSFNC T0547 362 :LYDLYKSIKPSNAL 7odcA 330 :LYDHAHVKALLQKR T0547 376 :EYLHDSIDHLESILTLFDLGYVD 7odcA 347 :DEKYYSSSIWGPTCDGLDRIVER T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQ T0547 429 :LLAIQDEVQERYLV 7odcA 404 :NIYYVMSRPMWQLM Number of specific fragments extracted= 21 number of extra gaps= 0 total=25217 Will force an alignment to be made, even if fragment is small Number of alignments=1127 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)M2 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)N443 because last residue in template chain is (7odcA)K418 T0547 19 :GKVCINYEKKPAIIDIVKELRDD 7odcA 3 :SFTKDEFDCHILDEGFTAKDILD T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQV T0547 140 :INIGF 7odcA 118 :SQIKY T0547 146 :AAEMGHNI 7odcA 123 :AASNGVQM T0547 155 :LTIEGLNELEAIIDIAKE 7odcA 131 :MTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENKL 7odcA 170 :FGATLKTSRLLLERAKELNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 190 :DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEY 7odcA 228 :SMHLLDIGGGFPGSE T0547 283 :KNEK 7odcA 243 :DTKL T0547 291 :TLREYANDVVFILKNIAEQ 7odcA 247 :KFEEITSVINPALDKYFPS T0547 311 :K 7odcA 266 :D T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 267 :SGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 344 :Y 7odcA 312 :Q T0547 346 :ENKLILKKQNPKLIDELYDLYKSIK 7odcA 313 :TFMYYVNDGVYGSFNCILYDHAHVK T0547 371 :PSNALEYLHDSIDHLESILTLFDLGYVD 7odcA 342 :KRPKPDEKYYSSSIWGPTCDGLDRIVER T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQ T0547 429 :LLAIQDEVQERYLV 7odcA 404 :NIYYVMSRPMWQLM Number of specific fragments extracted= 20 number of extra gaps= 0 total=25237 Will force an alignment to be made, even if fragment is small Number of alignments=1128 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)N13 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)N443 because last residue in template chain is (7odcA)K418 T0547 14 :FIIKNGK 7odcA 3 :SFTKDEF T0547 26 :EKKPAIIDIVKELRDD 7odcA 10 :DCHILDEGFTAKDILD T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIGT T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 7odcA 86 :GFDCASKTEIQLVQGLGVPAERVIYANPCKQV T0547 140 :INIGF 7odcA 118 :SQIKY T0547 146 :AAEMGHNI 7odcA 123 :AASNGVQM T0547 155 :LTIEGLNELEAIIDIAKE 7odcA 131 :MTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENKL 7odcA 170 :FGATLKTSRLLLERAKELNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 190 :DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEYS 7odcA 228 :SMHLLDIGGGFPGSED T0547 284 :NEK 7odcA 244 :TKL T0547 291 :TLREYANDVVFILKNIAE 7odcA 247 :KFEEITSVINPALDKYFP T0547 309 :QKKDL 7odcA 266 :DSGVR T0547 317 :IFIESGRFVAANHAVLIAPVLELFSQ 7odcA 271 :IIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDE 7odcA 312 :QTFMYYVNDGVYGSFNC T0547 362 :LYDLYKSIKPSNAL 7odcA 330 :LYDHAHVKALLQKR T0547 376 :EYLHDSIDHLESILTLFDLGYVD 7odcA 347 :DEKYYSSSIWGPTCDGLDRIVER T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQ T0547 429 :LLAIQDEVQERYLV 7odcA 404 :NIYYVMSRPMWQLM Number of specific fragments extracted= 21 number of extra gaps= 0 total=25258 Will force an alignment to be made, even if fragment is small Number of alignments=1129 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)E12 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)D564 because last residue in template chain is (7odcA)K418 T0547 13 :NFIIKNGKVCINYEK 7odcA 3 :SFTKDEFDCHILDEG T0547 34 :IVKELRDD 7odcA 18 :FTAKDILD T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQV T0547 140 :INIGF 7odcA 118 :SQIKY T0547 146 :AAEMGHNI 7odcA 123 :AASNGVQM T0547 155 :LTIEGLNELEAIIDIAKE 7odcA 131 :MTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENKL 7odcA 170 :FGATLKTSRLLLERAKELNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 190 :DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEY 7odcA 228 :SMHLLDIGGGFPGSE T0547 285 :EKSR 7odcA 243 :DTKL T0547 291 :TLREYANDVVFILKNIAEQK 7odcA 247 :KFEEITSVINPALDKYFPSD T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 267 :SGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDELYDLYKSIK 7odcA 312 :QTFMYYVNDGVYGSFNCILYDHAHVK T0547 371 :PSNALEYLHDSIDHLESILTLFDLGYVD 7odcA 342 :KRPKPDEKYYSSSIWGPTCDGLDRIVER T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQ T0547 474 :RSASIWDI 7odcA 403 :PNIYYVMS T0547 557 :LDTLEDL 7odcA 411 :RPMWQLM Number of specific fragments extracted= 20 number of extra gaps= 0 total=25278 Will force an alignment to be made, even if fragment is small Number of alignments=1130 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)N13 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)N443 because last residue in template chain is (7odcA)K418 T0547 14 :FIIKN 7odcA 3 :SFTKD T0547 19 :GKVC 7odcA 9 :FDCH T0547 29 :PAIIDIVKELRDD 7odcA 13 :ILDEGFTAKDILD T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIGT T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 7odcA 86 :GFDCASKTEIQLVQGLGVPAERVIYANPCKQV T0547 140 :INIGF 7odcA 118 :SQIKY T0547 146 :AAEMGHNI 7odcA 123 :AASNGVQM T0547 155 :LTIEGLNELEAIIDIAKE 7odcA 131 :MTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENKL 7odcA 170 :FGATLKTSRLLLERAKELNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 190 :DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEY 7odcA 228 :SMHLLDIGGGFPGSE T0547 283 :KNEK 7odcA 243 :DTKL T0547 291 :TLREYANDVVFILKNIAEQK 7odcA 247 :KFEEITSVINPALDKYFPSD T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 267 :SGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDE 7odcA 312 :QTFMYYVNDGVYGSFNC T0547 362 :LYDLYKSIKPS 7odcA 330 :LYDHAHVKALL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVER T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQ T0547 429 :LLAIQDEVQERYLV 7odcA 404 :NIYYVMSRPMWQLM Number of specific fragments extracted= 21 number of extra gaps= 0 total=25299 Will force an alignment to be made, even if fragment is small Number of alignments=1131 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 31 :IIDIVKELRDD 7odcA 15 :DEGFTAKDILD T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDR 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQ T0547 139 :LINIGF 7odcA 117 :VSQIKY T0547 146 :AAEMGHNI 7odcA 123 :AASNGVQM T0547 155 :LTIEGLNELEAIIDIAKE 7odcA 131 :MTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENKL 7odcA 170 :FGATLKTSRLLLERAKELNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 190 :DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLA 7odcA 228 :SMHLLDIGGGFP T0547 282 :FKNEKSR 7odcA 240 :GSEDTKL T0547 291 :TLREYANDVVFILKNIAEQK 7odcA 247 :KFEEITSVINPALDKYFPSD T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 267 :SGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDE 7odcA 312 :QTFMYYVNDGVYGSFNC T0547 362 :LYDLYKSIKPS 7odcA 330 :LYDHAHVKALL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVER T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERY 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPM Number of specific fragments extracted= 18 number of extra gaps= 0 total=25317 Will force an alignment to be made, even if fragment is small Number of alignments=1132 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)N443 because last residue in template chain is (7odcA)K418 T0547 26 :EKKPAIIDIVKELRDD 7odcA 10 :DCHILDEGFTAKDILD T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIGT T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 7odcA 86 :GFDCASKTEIQLVQGLGVPAERVIYANPCKQV T0547 140 :INIGF 7odcA 118 :SQIKY T0547 146 :AAEMGHNI 7odcA 123 :AASNGVQM T0547 155 :LTIEGLNELEAIIDIAKE 7odcA 131 :MTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENKL 7odcA 170 :FGATLKTSRLLLERAKELNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 190 :DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEY 7odcA 228 :SMHLLDIGGGFPGSE T0547 283 :KNEK 7odcA 243 :DTKL T0547 291 :TLREYANDVVFILKNIA 7odcA 247 :KFEEITSVINPALDKYF T0547 310 :KKDL 7odcA 265 :SDSG T0547 315 :PDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 269 :VRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDE 7odcA 312 :QTFMYYVNDGVYGSFNC T0547 362 :LYDLYKSIKPSNAL 7odcA 330 :LYDHAHVKALLQKR T0547 376 :EYLHDSIDHLESILTLFDLGYVD 7odcA 347 :DEKYYSSSIWGPTCDGLDRIVER T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQ T0547 429 :LLAIQDEVQERYLV 7odcA 404 :NIYYVMSRPMWQLM Number of specific fragments extracted= 20 number of extra gaps= 0 total=25337 Will force an alignment to be made, even if fragment is small Number of alignments=1133 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)N443 because last residue in template chain is (7odcA)K418 T0547 24 :NYEKKPAIIDIVKELRDD 7odcA 8 :EFDCHILDEGFTAKDILD T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQV T0547 140 :INIGF 7odcA 118 :SQIKY T0547 146 :AAEMGHNI 7odcA 123 :AASNGVQM T0547 155 :LTIEGLNELEAIIDIAKE 7odcA 131 :MTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENKL 7odcA 170 :FGATLKTSRLLLERAKELNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 190 :DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEY 7odcA 228 :SMHLLDIGGGFPGSE T0547 283 :KNEK 7odcA 243 :DTKL T0547 291 :TLREYANDVVFILKNIAEQ 7odcA 247 :KFEEITSVINPALDKYFPS T0547 311 :K 7odcA 266 :D T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 267 :SGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 344 :Y 7odcA 312 :Q T0547 346 :ENKLILKKQNPKLIDELYDLYKSIK 7odcA 313 :TFMYYVNDGVYGSFNCILYDHAHVK T0547 371 :PSNALEYLHDSIDHLESILTLFDLGYVD 7odcA 342 :KRPKPDEKYYSSSIWGPTCDGLDRIVER T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQ T0547 429 :LLAIQDEVQERYLV 7odcA 404 :NIYYVMSRPMWQLM Number of specific fragments extracted= 20 number of extra gaps= 0 total=25357 Will force an alignment to be made, even if fragment is small Number of alignments=1134 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)N443 because last residue in template chain is (7odcA)K418 T0547 26 :EKKPAIIDIVKELRDD 7odcA 10 :DCHILDEGFTAKDILD T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIGT T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 7odcA 86 :GFDCASKTEIQLVQGLGVPAERVIYANPCKQV T0547 140 :INIGF 7odcA 118 :SQIKY T0547 146 :AAEMGHNI 7odcA 123 :AASNGVQM T0547 155 :LTIEGLNELEAIIDIAKE 7odcA 131 :MTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENKL 7odcA 170 :FGATLKTSRLLLERAKELNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 190 :DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEYS 7odcA 228 :SMHLLDIGGGFPGSED T0547 284 :NEK 7odcA 244 :TKL T0547 291 :TLREYANDVVFILKNIAE 7odcA 247 :KFEEITSVINPALDKYFP T0547 309 :QKKDL 7odcA 266 :DSGVR T0547 317 :IFIESGRFVAANHAVLIAPVLELFSQ 7odcA 271 :IIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDE 7odcA 312 :QTFMYYVNDGVYGSFNC T0547 362 :LYDLYKSIKPSNAL 7odcA 330 :LYDHAHVKALLQKR T0547 376 :EYLHDSIDHLESILTLFDLGYVD 7odcA 347 :DEKYYSSSIWGPTCDGLDRIVER T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQ T0547 429 :LLAIQDEVQERYLV 7odcA 404 :NIYYVMSRPMWQLM Number of specific fragments extracted= 20 number of extra gaps= 0 total=25377 Will force an alignment to be made, even if fragment is small Number of alignments=1135 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 13 :NFIIKNGKVCINYEK 7odcA 3 :SFTKDEFDCHILDEG T0547 34 :IVKELRDD 7odcA 18 :FTAKDILD T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQV T0547 140 :INIGF 7odcA 118 :SQIKY T0547 146 :AAEMGHNI 7odcA 123 :AASNGVQM T0547 155 :LTIEGLNELEAIIDIAKE 7odcA 131 :MTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENKL 7odcA 170 :FGATLKTSRLLLERAKELNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 190 :DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEY 7odcA 228 :SMHLLDIGGGFPGSE T0547 285 :EKSR 7odcA 243 :DTKL T0547 291 :TLREYANDVVFILKNIAEQK 7odcA 247 :KFEEITSVINPALDKYFPSD T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 267 :SGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDELYDLYKSIK 7odcA 312 :QTFMYYVNDGVYGSFNCILYDHAHVK T0547 371 :PSNALEYLHDSIDHLESILTLFDLGYVD 7odcA 342 :KRPKPDEKYYSSSIWGPTCDGLDRIVER T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADL 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQR Number of specific fragments extracted= 18 number of extra gaps= 0 total=25395 Will force an alignment to be made, even if fragment is small Number of alignments=1136 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)N443 because last residue in template chain is (7odcA)K418 T0547 14 :FIIKNGKVCI 7odcA 4 :FTKDEFDCHI T0547 30 :AIIDIVKELRDD 7odcA 14 :LDEGFTAKDILD T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIGT T0547 107 :GLEAGSKAELLLAMAYNNEGAPITVNGFKDRE 7odcA 86 :GFDCASKTEIQLVQGLGVPAERVIYANPCKQV T0547 140 :INIGF 7odcA 118 :SQIKY T0547 146 :AAEMGHNI 7odcA 123 :AASNGVQM T0547 155 :LTIEGLNELEAIIDIAKE 7odcA 131 :MTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENKL 7odcA 170 :FGATLKTSRLLLERAKELNI T0547 226 :QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 190 :DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEY 7odcA 228 :SMHLLDIGGGFPGSE T0547 283 :KNEK 7odcA 243 :DTKL T0547 291 :TLREYANDVVFILKNIAEQK 7odcA 247 :KFEEITSVINPALDKYFPSD T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 267 :SGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDE 7odcA 312 :QTFMYYVNDGVYGSFNC T0547 362 :LYDLYKSIKPS 7odcA 330 :LYDHAHVKALL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVD 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVER T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPAD 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQ T0547 429 :LLAIQDEVQERYLV 7odcA 404 :NIYYVMSRPMWQLM Number of specific fragments extracted= 20 number of extra gaps= 0 total=25415 Will force an alignment to be made, even if fragment is small Number of alignments=1137 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)E12 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)D40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)S445 because last residue in template chain is (7odcA)K418 T0547 13 :NFIIKN 7odcA 3 :SFTKDE T0547 21 :VCINYEKKPAIIDIVKELR 7odcA 10 :DCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIY T0547 132 :NGFKDRELINIGF 7odcA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 7odcA 125 :SNGVQMM T0547 156 :TIEGLNELEAIIDIAKE 7odcA 132 :TFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LEQFT 7odcA 189 :IDVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 194 :VSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAV 7odcA 228 :SMHLLDIGGGFPG T0547 281 :QFKNEK 7odcA 241 :SEDTKL T0547 291 :TLREYANDVVFILKNIAEQK 7odcA 247 :KFEEITSVINPALDKYFPSD T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 267 :SGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKK 7odcA 312 :QTFMYYVND T0547 354 :QNPKLIDELYDLYKSIKPSNALE 7odcA 322 :VYGSFNCILYDHAHVKALLQKRP T0547 377 :YLHDSIDHLESILTLFDLGY 7odcA 351 :YSSSIWGPTCDGLDRIVERC T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNF 7odcA 371 :NLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLM Number of specific fragments extracted= 20 number of extra gaps= 0 total=25435 Will force an alignment to be made, even if fragment is small Number of alignments=1138 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)N13 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)D40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)E576 because last residue in template chain is (7odcA)K418 T0547 14 :FIIKNGKVCINYEKKPAIIDIVKELR 7odcA 3 :SFTKDEFDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIGT T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 7odcA 86 :GFDCASKTEIQLVQGLGVPAERVIY T0547 132 :NGFKDRELINIGF 7odcA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 7odcA 125 :SNGVQMM T0547 156 :TIEGLNELEAIIDIAKE 7odcA 132 :TFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LEQFT 7odcA 189 :IDVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 194 :VSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEYSQ 7odcA 228 :SMHLLDIGGGFPGSEDT T0547 285 :EK 7odcA 245 :KL T0547 291 :TLREYANDVVFILKNI 7odcA 247 :KFEEITSVINPALDKY T0547 308 :EQKKD 7odcA 265 :SDSGV T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 270 :RIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKK 7odcA 312 :QTFMYYVND T0547 354 :QNPKLIDELYDLYKSI 7odcA 322 :VYGSFNCILYDHAHVK T0547 370 :KPSNALE 7odcA 343 :RPKPDEK T0547 377 :YLHDSIDHLESILTLFDLGYV 7odcA 351 :YSSSIWGPTCDGLDRIVERCN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRP T0547 571 :MDILN 7odcA 413 :MWQLM Number of specific fragments extracted= 22 number of extra gaps= 0 total=25457 Will force an alignment to be made, even if fragment is small Number of alignments=1139 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)S445 because last residue in template chain is (7odcA)K418 T0547 1 :MMDYG 7odcA 2 :SSFTK T0547 19 :GKVCINYEKK 7odcA 7 :DEFDCHILDE T0547 29 :PAIIDIVK 7odcA 18 :FTAKDILD T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANP T0547 135 :KDRELINIGF 7odcA 115 :KQVSQIKYAA T0547 148 :EMGHNIT 7odcA 125 :SNGVQMM T0547 156 :TIEGLNELEAIIDIAKE 7odcA 132 :TFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LEQFT 7odcA 189 :IDVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 194 :VSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEYSQ 7odcA 228 :SMHLLDIGGGFPGSEDT T0547 285 :E 7odcA 245 :K T0547 290 :YTLREYANDVVFILKNIAEQ 7odcA 246 :LKFEEITSVINPALDKYFPS T0547 311 :K 7odcA 266 :D T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 267 :SGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKK 7odcA 312 :QTFMYYVND T0547 354 :QNPKLIDELYDLYK 7odcA 322 :VYGSFNCILYDHAH T0547 368 :SIKPSNALEYLHDSIDHLESILTLFDLGY 7odcA 342 :KRPKPDEKYYSSSIWGPTCDGLDRIVERC T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNF 7odcA 371 :NLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLM Number of specific fragments extracted= 22 number of extra gaps= 0 total=25479 Will force an alignment to be made, even if fragment is small Number of alignments=1140 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)N13 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)D40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)E576 because last residue in template chain is (7odcA)K418 T0547 14 :FIIKNGKVCINYEKKPAIIDIVKELR 7odcA 3 :SFTKDEFDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIGT T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 7odcA 86 :GFDCASKTEIQLVQGLGVPAERVIY T0547 133 :GF 7odcA 112 :NP T0547 135 :KDRELINIGF 7odcA 115 :KQVSQIKYAA T0547 148 :EMGHNIT 7odcA 125 :SNGVQMM T0547 156 :TIEGLNELEAIIDIAKE 7odcA 132 :TFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LEQFT 7odcA 189 :IDVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 194 :VSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEYSQF 7odcA 228 :SMHLLDIGGGFPGSEDTK T0547 290 :YTLREYANDVVFILKNI 7odcA 246 :LKFEEITSVINPALDKY T0547 307 :AEQKKD 7odcA 264 :PSDSGV T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 270 :RIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKK 7odcA 312 :QTFMYYVND T0547 354 :QNPKLIDELYDLYK 7odcA 322 :VYGSFNCILYDHAH T0547 368 :SIKPSNALEYLHDSIDHLESILTLFDLGYV 7odcA 342 :KRPKPDEKYYSSSIWGPTCDGLDRIVERCN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRP T0547 571 :MDILN 7odcA 413 :MWQLM Number of specific fragments extracted= 21 number of extra gaps= 0 total=25500 Will force an alignment to be made, even if fragment is small Number of alignments=1141 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)N13 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)N601 because last residue in template chain is (7odcA)K418 T0547 14 :FIIKNGKVCINYEKKPAIIDIVKELR 7odcA 3 :SFTKDEFDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANP T0547 135 :KDRELINIGF 7odcA 115 :KQVSQIKYAA T0547 148 :EMGHNIT 7odcA 125 :SNGVQMM T0547 156 :TIEGLNELEAIIDIAKE 7odcA 132 :TFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LEQFT 7odcA 189 :IDVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 194 :VSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEY 7odcA 228 :SMHLLDIGGGFPGSE T0547 283 :KNEK 7odcA 243 :DTKL T0547 291 :TLREYANDVVFILKNIA 7odcA 247 :KFEEITSVINPALDKYF T0547 308 :EQKKD 7odcA 265 :SDSGV T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 270 :RIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKK 7odcA 312 :QTFMYYVND T0547 354 :QNPKLIDELYDLYK 7odcA 322 :VYGSFNCILYDHAH T0547 368 :SIKPSNALEYLHDSIDHLESILTLFDLGY 7odcA 342 :KRPKPDEKYYSSSIWGPTCDGLDRIVERC T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLA 7odcA 371 :NLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPN T0547 476 :ASIWD 7odcA 405 :IYYVM T0547 586 :DKQ 7odcA 411 :RPM T0547 597 :YLFL 7odcA 414 :WQLM Number of specific fragments extracted= 23 number of extra gaps= 0 total=25523 Will force an alignment to be made, even if fragment is small Number of alignments=1142 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)N13 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)D602 because last residue in template chain is (7odcA)K418 T0547 14 :FIIKNGKVCINYEKKPAIIDIVKELR 7odcA 3 :SFTKDEFDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIGT T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 7odcA 86 :GFDCASKTEIQLVQGLGVPAERVIY T0547 132 :NGFKDRELINIGF 7odcA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 7odcA 125 :SNGVQMM T0547 156 :TIEGLNELEAIIDIAKE 7odcA 132 :TFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LEQFT 7odcA 189 :IDVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 194 :VSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEYSQF 7odcA 228 :SMHLLDIGGGFPGSEDTK T0547 290 :YTLREYANDVVFILKNI 7odcA 246 :LKFEEITSVINPALDKY T0547 307 :AEQKKD 7odcA 264 :PSDSGV T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 270 :RIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKK 7odcA 312 :QTFMYYVND T0547 354 :QNPKLIDELYDLYKSI 7odcA 322 :VYGSFNCILYDHAHVK T0547 370 :KPSNALEYLHDSIDHLESILTLFDLGYV 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVERCN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVM T0547 515 :LVGA 7odcA 410 :SRPM T0547 598 :LFLN 7odcA 414 :WQLM Number of specific fragments extracted= 21 number of extra gaps= 0 total=25544 Will force an alignment to be made, even if fragment is small Number of alignments=1143 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)D40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)S445 because last residue in template chain is (7odcA)K418 T0547 20 :KVCINYEKKPAIIDIVKELR 7odcA 9 :FDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITV 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIY T0547 132 :NGFKDRELINIGF 7odcA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 7odcA 125 :SNGVQMM T0547 156 :TIEGLNELEAIIDIAKE 7odcA 132 :TFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LEQFT 7odcA 189 :IDVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 194 :VSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAV 7odcA 228 :SMHLLDIGGGFPG T0547 281 :QFKNEK 7odcA 241 :SEDTKL T0547 291 :TLREYANDVVFILKNIAEQK 7odcA 247 :KFEEITSVINPALDKYFPSD T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 267 :SGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKK 7odcA 312 :QTFMYYVND T0547 354 :QNPKLIDELYDLYKSIKPSNALE 7odcA 322 :VYGSFNCILYDHAHVKALLQKRP T0547 377 :YLHDSIDHLESILTLFDLGY 7odcA 351 :YSSSIWGPTCDGLDRIVERC T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNF 7odcA 371 :NLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLM Number of specific fragments extracted= 19 number of extra gaps= 0 total=25563 Will force an alignment to be made, even if fragment is small Number of alignments=1144 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)N13 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)D40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 14 :FIIKNGKVCINYEKKPAIIDIVKELR 7odcA 3 :SFTKDEFDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIGT T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 7odcA 86 :GFDCASKTEIQLVQGLGVPAERVIY T0547 132 :NGFKDRELINIGF 7odcA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 7odcA 125 :SNGVQMM T0547 156 :TIEGLNELEAIIDIAKE 7odcA 132 :TFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LEQFT 7odcA 189 :IDVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 194 :VSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEYSQ 7odcA 228 :SMHLLDIGGGFPGSEDT T0547 285 :EK 7odcA 245 :KL T0547 291 :TLREYANDVVFILKNI 7odcA 247 :KFEEITSVINPALDKY T0547 308 :EQKKD 7odcA 265 :SDSGV T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 270 :RIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKK 7odcA 312 :QTFMYYVND T0547 354 :QNPKLIDELYDLYKSI 7odcA 322 :VYGSFNCILYDHAHVK T0547 370 :KPSNALE 7odcA 343 :RPKPDEK T0547 377 :YLHDSIDHLESILTLFDLGYV 7odcA 351 :YSSSIWGPTCDGLDRIVERCN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRP Number of specific fragments extracted= 21 number of extra gaps= 0 total=25584 Will force an alignment to be made, even if fragment is small Number of alignments=1145 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)S445 because last residue in template chain is (7odcA)K418 T0547 24 :NYEKK 7odcA 12 :HILDE T0547 29 :PAIIDIVK 7odcA 18 :FTAKDILD T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANP T0547 135 :KDRELINIGF 7odcA 115 :KQVSQIKYAA T0547 148 :EMGHNIT 7odcA 125 :SNGVQMM T0547 156 :TIEGLNELEAIIDIAKE 7odcA 132 :TFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LEQFT 7odcA 189 :IDVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 194 :VSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEYSQ 7odcA 228 :SMHLLDIGGGFPGSEDT T0547 285 :E 7odcA 245 :K T0547 290 :YTLREYANDVVFILKNIAEQ 7odcA 246 :LKFEEITSVINPALDKYFPS T0547 311 :K 7odcA 266 :D T0547 313 :LEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 267 :SGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKK 7odcA 312 :QTFMYYVND T0547 354 :QNPKLIDELYDLYK 7odcA 322 :VYGSFNCILYDHAH T0547 368 :SIKPSNALEYLHDSIDHLESILTLFDLGY 7odcA 342 :KRPKPDEKYYSSSIWGPTCDGLDRIVERC T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNF 7odcA 371 :NLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLM Number of specific fragments extracted= 21 number of extra gaps= 0 total=25605 Will force an alignment to be made, even if fragment is small Number of alignments=1146 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)D40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 15 :IIKNGKVCINYEKKPAIIDIVKELR 7odcA 4 :FTKDEFDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIGT T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 7odcA 86 :GFDCASKTEIQLVQGLGVPAERVIY T0547 133 :GF 7odcA 112 :NP T0547 135 :KDRELINIGF 7odcA 115 :KQVSQIKYAA T0547 148 :EMGHNIT 7odcA 125 :SNGVQMM T0547 156 :TIEGLNELEAIIDIAKE 7odcA 132 :TFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LEQFT 7odcA 189 :IDVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 194 :VSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEYSQF 7odcA 228 :SMHLLDIGGGFPGSEDTK T0547 290 :YTLREYANDVVFILKNI 7odcA 246 :LKFEEITSVINPALDKY T0547 307 :AEQKKD 7odcA 264 :PSDSGV T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 270 :RIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKK 7odcA 312 :QTFMYYVND T0547 354 :QNPKLIDELYDLYK 7odcA 322 :VYGSFNCILYDHAH T0547 368 :SIKPSNALEYLHDSIDHLESILTLFDLGYV 7odcA 342 :KRPKPDEKYYSSSIWGPTCDGLDRIVERCN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRP Number of specific fragments extracted= 20 number of extra gaps= 0 total=25625 Will force an alignment to be made, even if fragment is small Number of alignments=1147 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 18 :NGKVCINYEKKPAIIDIVKELR 7odcA 7 :DEFDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLG 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGF 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANP T0547 135 :KDRELINIGF 7odcA 115 :KQVSQIKYAA T0547 148 :EMGHNIT 7odcA 125 :SNGVQMM T0547 156 :TIEGLNELEAIIDIAKE 7odcA 132 :TFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LEQFT 7odcA 189 :IDVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 194 :VSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEY 7odcA 228 :SMHLLDIGGGFPGSE T0547 283 :KNEK 7odcA 243 :DTKL T0547 291 :TLREYANDVVFILKNIA 7odcA 247 :KFEEITSVINPALDKYF T0547 308 :EQKKD 7odcA 265 :SDSGV T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 270 :RIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKK 7odcA 312 :QTFMYYVND T0547 354 :QNPKLIDELYDLYK 7odcA 322 :VYGSFNCILYDHAH T0547 368 :SIKPSNALEYLHDSIDHLESILTLFDLGY 7odcA 342 :KRPKPDEKYYSSSIWGPTCDGLDRIVERC T0547 398 :DLQDRSNAEILTHLITKKAILLLGDKQNPADLLA 7odcA 371 :NLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPN T0547 476 :ASIWD 7odcA 405 :IYYVM Number of specific fragments extracted= 21 number of extra gaps= 0 total=25646 Will force an alignment to be made, even if fragment is small Number of alignments=1148 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 15 :IIKNGKVCINYEKKPAIIDIVKELR 7odcA 4 :FTKDEFDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNF 7odcA 37 :KDAFYVADLGDILKKHLRWLKAL T0547 77 :GGFNAVYPLKVNQYPGFVKNLVKLGK 7odcA 60 :PRVTPFYAVKCNDSRAIVSTLAAIGT T0547 107 :GLEAGSKAELLLAMAYNNEGAPITV 7odcA 86 :GFDCASKTEIQLVQGLGVPAERVIY T0547 132 :NGFKDRELINIGF 7odcA 112 :NPCKQVSQIKYAA T0547 148 :EMGHNIT 7odcA 125 :SNGVQMM T0547 156 :TIEGLNELEAIIDIAKE 7odcA 132 :TFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 224 :LEQFT 7odcA 189 :IDVIG T0547 230 :IHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 7odcA 194 :VSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF T0547 265 :NLKAINLGGGLAVEYSQF 7odcA 228 :SMHLLDIGGGFPGSEDTK T0547 290 :YTLREYANDVVFILKNI 7odcA 246 :LKFEEITSVINPALDKY T0547 307 :AEQKKD 7odcA 264 :PSDSGV T0547 316 :DIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 270 :RIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKK 7odcA 312 :QTFMYYVND T0547 354 :QNPKLIDELYDLYKSI 7odcA 322 :VYGSFNCILYDHAHVK T0547 370 :KPSNALEYLHDSIDHLESILTLFDLGYV 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVERCN T0547 399 :LQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQ 7odcA 372 :LPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIY Number of specific fragments extracted= 19 number of extra gaps= 0 total=25665 Will force an alignment to be made, even if fragment is small Number of alignments=1149 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)M2 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)K36 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 13 :NFIIKNGKVCINYEKK 7odcA 3 :SFTKDEFDCHILDEGF T0547 29 :PAIIDIV 7odcA 22 :DILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 7odcA 37 :KDAFYVADLGDILKKHLRWLKALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 7odcA 61 :RVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 7odcA 189 :IDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEV T0547 263 :AKNLKAINLGGGLAVEYSQ 7odcA 226 :GFSMHLLDIGGGFPGSEDT T0547 292 :LREYANDVVFILKNI 7odcA 248 :FEEITSVINPALDKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 263 :FPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 7odcA 313 :TFMYYVNDGVYGSFNCILYDHAHVKALL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVERCNLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFS 7odcA 375 :MHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLM Number of specific fragments extracted= 15 number of extra gaps= 0 total=25680 Will force an alignment to be made, even if fragment is small Number of alignments=1150 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)I15 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)L600 because last residue in template chain is (7odcA)K418 T0547 16 :IKNGKVCINYEKKPAIIDIVKELRDD 7odcA 3 :SFTKDEFDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 7odcA 37 :KDAFYVADLGDILKKHLRWLKALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 7odcA 61 :RVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 7odcA 189 :IDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEV T0547 263 :AKNLKAINLGGGLAVEY 7odcA 226 :GFSMHLLDIGGGFPGSE T0547 283 :KNEKSR 7odcA 243 :DTKLKF T0547 293 :REYANDVVFILKNI 7odcA 249 :EEITSVINPALDKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 263 :FPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 7odcA 313 :TFMYYVNDGVYGSFNCILYDHAHVKALL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVERCNLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 7odcA 375 :MHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMS T0547 590 :K 7odcA 411 :R T0547 594 :GELYLF 7odcA 412 :PMWQLM Number of specific fragments extracted= 17 number of extra gaps= 0 total=25697 Will force an alignment to be made, even if fragment is small Number of alignments=1151 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)I15 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)E37 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)D36 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)S445 because last residue in template chain is (7odcA)K418 T0547 16 :IKNGKVCINYEKK 7odcA 3 :SFTKDEFDCHILD T0547 29 :PAIIDIVK 7odcA 21 :KDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 7odcA 37 :KDAFYVADLGDILKKHLRWLKALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 7odcA 61 :RVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 7odcA 189 :IDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEV T0547 263 :AKNLKAINLGGGLAVEYS 7odcA 226 :GFSMHLLDIGGGFPGSED T0547 288 :RNYTLREYANDVVFILKNIAEQ 7odcA 244 :TKLKFEEITSVINPALDKYFPS T0547 312 :DLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 266 :DSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 344 :YAENKLILKKQNPKLIDELYDLYKSIKPS 7odcA 312 :QTFMYYVNDGVYGSFNCILYDHAHVKALL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVERCNLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 7odcA 375 :MHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYV T0547 437 :QERYLVNF 7odcA 410 :SRPMWQLM Number of specific fragments extracted= 16 number of extra gaps= 0 total=25713 Will force an alignment to be made, even if fragment is small Number of alignments=1152 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)N13 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)L446 because last residue in template chain is (7odcA)K418 T0547 14 :FIIKNGKVC 7odcA 3 :SFTKDEFDC T0547 29 :PAIIDIVKELRDD 7odcA 16 :EGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 7odcA 37 :KDAFYVADLGDILKKHLRWLKALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 7odcA 61 :RVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 7odcA 189 :IDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEV T0547 263 :AKNLKAINLGGGLAVEYSQ 7odcA 226 :GFSMHLLDIGGGFPGSEDT T0547 285 :E 7odcA 245 :K T0547 290 :YTLREYANDVVFILKNIA 7odcA 246 :LKFEEITSVINPALDKYF T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 264 :PSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 7odcA 313 :TFMYYVNDGVYGSFNCILYDHAHVKALL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVERCNLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFS 7odcA 375 :MHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLM Number of specific fragments extracted= 16 number of extra gaps= 0 total=25729 Will force an alignment to be made, even if fragment is small Number of alignments=1153 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)N13 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)D564 because last residue in template chain is (7odcA)K418 T0547 14 :FIIKNGKVCINYEKKPAIIDIVKELR 7odcA 3 :SFTKDEFDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 7odcA 37 :KDAFYVADLGDILKKHLRWLKALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 7odcA 61 :RVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 7odcA 189 :IDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEV T0547 263 :AKNLKAINLGGGLAVEYSQ 7odcA 226 :GFSMHLLDIGGGFPGSEDT T0547 289 :NYTLREYANDVVFILKNIAE 7odcA 245 :KLKFEEITSVINPALDKYFP T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 265 :SDSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 344 :YAENKLILKKQNPKLIDELY 7odcA 312 :QTFMYYVNDGVYGSFNCILY T0547 368 :SIKPS 7odcA 333 :HAHVK T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVERCNLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLL 7odcA 375 :MHVGDWMLFENMGAYTVAAASTFNGFQR T0547 474 :RSASIWDI 7odcA 403 :PNIYYVMS T0547 557 :LDTLEDL 7odcA 411 :RPMWQLM Number of specific fragments extracted= 17 number of extra gaps= 0 total=25746 Will force an alignment to be made, even if fragment is small Number of alignments=1154 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)V21 because first residue in template chain is (7odcA)S2 Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)D564 because last residue in template chain is (7odcA)K418 T0547 22 :CINYEKK 7odcA 3 :SFTKDEF T0547 29 :PAIIDIVKELRDD 7odcA 16 :EGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 7odcA 37 :KDAFYVADLGDILKKHLRWLKALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 7odcA 61 :RVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 7odcA 189 :IDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEV T0547 263 :AKNLKAINLGGGLAVEYSQF 7odcA 226 :GFSMHLLDIGGGFPGSEDTK T0547 290 :YTLREYANDVVFILKNI 7odcA 246 :LKFEEITSVINPALDKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 263 :FPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 7odcA 313 :TFMYYVNDGVYGSFNCILYDHAHVKALL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVERCNLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLA 7odcA 375 :MHVGDWMLFENMGAYTVAAASTFNGFQRP T0547 475 :SASIWDI 7odcA 404 :NIYYVMS T0547 516 :VG 7odcA 411 :RP T0547 559 :TLEDL 7odcA 413 :MWQLM Number of specific fragments extracted= 18 number of extra gaps= 0 total=25764 Will force an alignment to be made, even if fragment is small Number of alignments=1155 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 7odcA 37 :KDAFYVADLGDILKKHLRWLKALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 7odcA 61 :RVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 7odcA 189 :IDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEV T0547 263 :AKNLKAINLGGGLAVEYSQ 7odcA 226 :GFSMHLLDIGGGFPGSEDT T0547 292 :LREYANDVVFILKNI 7odcA 248 :FEEITSVINPALDKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 263 :FPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 7odcA 313 :TFMYYVNDGVYGSFNCILYDHAHVKALL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVERCNLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYL 7odcA 375 :MHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPM Number of specific fragments extracted= 13 number of extra gaps= 0 total=25777 Will force an alignment to be made, even if fragment is small Number of alignments=1156 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 18 :NGKVCINYEKKPAIIDIVKELRDD 7odcA 5 :TKDEFDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 7odcA 37 :KDAFYVADLGDILKKHLRWLKALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 7odcA 61 :RVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 7odcA 189 :IDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEV T0547 263 :AKNLKAINLGGGLAVEY 7odcA 226 :GFSMHLLDIGGGFPGSE T0547 283 :KNEKSR 7odcA 243 :DTKLKF T0547 293 :REYANDVVFILKNI 7odcA 249 :EEITSVINPALDKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 263 :FPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 7odcA 313 :TFMYYVNDGVYGSFNCILYDHAHVKALL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVERCNLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQE 7odcA 375 :MHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMS Number of specific fragments extracted= 15 number of extra gaps= 0 total=25792 Will force an alignment to be made, even if fragment is small Number of alignments=1157 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)S445 because last residue in template chain is (7odcA)K418 T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 7odcA 37 :KDAFYVADLGDILKKHLRWLKALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 7odcA 61 :RVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 7odcA 189 :IDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEV T0547 263 :AKNLKAINLGGGLAVEYS 7odcA 226 :GFSMHLLDIGGGFPGSED T0547 288 :RNYTLREYANDVVFILKNIAEQ 7odcA 244 :TKLKFEEITSVINPALDKYFPS T0547 312 :DLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 266 :DSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 344 :YAENKLILKKQNPKLIDELYDLYKSIKPS 7odcA 312 :QTFMYYVNDGVYGSFNCILYDHAHVKALL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVERCNLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEV 7odcA 375 :MHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYV T0547 437 :QERYLVNF 7odcA 410 :SRPMWQLM Number of specific fragments extracted= 14 number of extra gaps= 0 total=25806 Will force an alignment to be made, even if fragment is small Number of alignments=1158 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 18 :NGKVCI 7odcA 7 :DEFDCH T0547 26 :EKKPAIIDIVKELRDD 7odcA 13 :ILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 7odcA 37 :KDAFYVADLGDILKKHLRWLKALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 7odcA 61 :RVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 7odcA 189 :IDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEV T0547 263 :AKNLKAINLGGGLAVEYSQ 7odcA 226 :GFSMHLLDIGGGFPGSEDT T0547 285 :E 7odcA 245 :K T0547 290 :YTLREYANDVVFILKNIA 7odcA 246 :LKFEEITSVINPALDKYF T0547 310 :KKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 264 :PSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 7odcA 313 :TFMYYVNDGVYGSFNCILYDHAHVKALL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVERCNLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQER 7odcA 375 :MHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSR Number of specific fragments extracted= 16 number of extra gaps= 0 total=25822 Will force an alignment to be made, even if fragment is small Number of alignments=1159 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 16 :IKNGKVCINYEKKPAIIDIVKELR 7odcA 5 :TKDEFDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 7odcA 37 :KDAFYVADLGDILKKHLRWLKALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 7odcA 61 :RVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 7odcA 189 :IDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEV T0547 263 :AKNLKAINLGGGLAVEYSQ 7odcA 226 :GFSMHLLDIGGGFPGSEDT T0547 289 :NYTLREYANDVVFILKNIAE 7odcA 245 :KLKFEEITSVINPALDKYFP T0547 311 :KDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 265 :SDSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 344 :YAENKLILKKQNPKLIDELY 7odcA 312 :QTFMYYVNDGVYGSFNCILY T0547 368 :SIKPS 7odcA 333 :HAHVK T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVERCNLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLL 7odcA 375 :MHVGDWMLFENMGAYTVAAASTFNGFQR T0547 474 :RSASIWDI 7odcA 403 :PNIYYVMS T0547 557 :LDTLEDL 7odcA 411 :RPMWQLM Number of specific fragments extracted= 17 number of extra gaps= 0 total=25839 Will force an alignment to be made, even if fragment is small Number of alignments=1160 # 7odcA read from all-align.a2m # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 22 :CINYEKKPAIIDIVKELRDD 7odcA 9 :FDCHILDEGFTAKDILDQKI T0547 44 :KGPLLLRFPHLIQKQIENIYGNFN 7odcA 37 :KDAFYVADLGDILKKHLRWLKALP T0547 78 :GFNAVYPLKVNQYPGFVKNLVKLG 7odcA 61 :RVTPFYAVKCNDSRAIVSTLAAIG T0547 106 :YGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG 7odcA 85 :TGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQ T0547 154 :TLTIEGLNELEAIIDIAKE 7odcA 130 :MMTFDSEIELMKVARAHPK T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA T0547 204 :FGLTSTELIEAVNLLKENK 7odcA 170 :FGATLKTSRLLLERAKELN T0547 225 :EQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 7odcA 189 :IDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEV T0547 263 :AKNLKAINLGGGLAVEYSQF 7odcA 226 :GFSMHLLDIGGGFPGSEDTK T0547 290 :YTLREYANDVVFILKNI 7odcA 246 :LKFEEITSVINPALDKY T0547 309 :QKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 7odcA 263 :FPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTV T0547 345 :AENKLILKKQNPKLIDELYDLYKSIKPS 7odcA 313 :TFMYYVNDGVYGSFNCILYDHAHVKALL T0547 373 :NALEYLHDSIDHLESILTLFDLGYVDLQDR 7odcA 344 :PKPDEKYYSSSIWGPTCDGLDRIVERCNLP T0547 403 :SNAEILTHLITKKAILLLGDKQNPADLLA 7odcA 375 :MHVGDWMLFENMGAYTVAAASTFNGFQRP T0547 475 :SASIWD 7odcA 404 :NIYYVM Number of specific fragments extracted= 15 number of extra gaps= 0 total=25854 Will force an alignment to be made, even if fragment is small Number of alignments=1161 # command:# Prefix for input files set to # command:CPU_time= 672.637 sec, elapsed time= 2866.445 sec. # command: # TryAllAlign to optimize cost = # ( 5.395 * align_constraints + 0.433 * phobic_fit + 5.237 * pred_nb11_back(9.650) + 3.487 * pred_bys_back + 3.032 * pred_alpha_back + 11.769 * wet6.5(6.500, /log(length)) + 2.146 * pred_n_notor_back + 59.013 * noncontact_bonus + 1.605 * break + 2.341 * pred_o_sep_back + 0.619 * sidechain_clashes + 2.571 * bystroff + 0.143 * contact(8.000) + 0.939 * alpha_prev + 0.741 * pred_n_sep_back + 0.319 * ehl2_constraints + 0.198 * deep_knot + 0.010 * cb14(14.000) ) # Will try all 1161 alignments, # shrinking each end by up to 0.000*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 1162: T0547.try1-al2+T0547-1twiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m:1twiA at pool[904] 1.438 cost/residue, 2996 clashes 0.131 breaks # command:# naming current conformation T0547.try1-al3 # command: # TryAllAlign to optimize cost = # ( 5.395 * align_constraints + 0.433 * phobic_fit + 5.237 * pred_nb11_back(9.650) + 3.487 * pred_bys_back + 3.032 * pred_alpha_back + 11.769 * wet6.5(6.500, /log(length)) + 2.146 * pred_n_notor_back + 59.013 * noncontact_bonus + 1.605 * break + 2.341 * pred_o_sep_back + 0.619 * sidechain_clashes + 2.571 * bystroff + 0.143 * contact(8.000) + 0.939 * alpha_prev + 0.741 * pred_n_sep_back + 0.319 * ehl2_constraints + 0.198 * deep_knot + 0.010 * cb14(14.000) ) # Will try all 1161 alignments, # shrinking each end by up to 0.200*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 1162: T0547.try1-al3 1.438 cost/residue, 2996 clashes 0.131 breaks # command:# naming current conformation T0547.try1-al4 # command: # TryAllAlign to optimize cost = # ( 5.395 * align_constraints + 0.433 * phobic_fit + 5.237 * pred_nb11_back(9.650) + 3.487 * pred_bys_back + 3.032 * pred_alpha_back + 11.769 * wet6.5(6.500, /log(length)) + 2.146 * pred_n_notor_back + 59.013 * noncontact_bonus + 1.605 * break + 2.341 * pred_o_sep_back + 0.619 * sidechain_clashes + 2.571 * bystroff + 0.143 * contact(8.000) + 0.939 * alpha_prev + 0.741 * pred_n_sep_back + 0.319 * ehl2_constraints + 0.198 * deep_knot + 0.010 * cb14(14.000) ) # Will try all 1161 alignments, # shrinking each end by up to 0.300*length and merging fragments shorter than 1 # Each alignment is added to result of previous insertion # best score in alignment pool out of 1162: T0547.try1-al4 1.438 cost/residue, 2996 clashes 0.131 breaks # command:# naming current conformation T0547.try1-al5 # command: # TryAllAlign to optimize cost = # ( 5.395 * align_constraints + 0.433 * phobic_fit + 5.237 * pred_nb11_back(9.650) + 3.487 * pred_bys_back + 3.032 * pred_alpha_back + 11.769 * wet6.5(6.500, /log(length)) + 2.146 * pred_n_notor_back + 59.013 * noncontact_bonus + 1.605 * break + 2.341 * pred_o_sep_back + 0.619 * sidechain_clashes + 2.571 * bystroff + 0.143 * contact(8.000) + 0.939 * alpha_prev + 0.741 * pred_n_sep_back + 0.319 * ehl2_constraints + 0.198 * deep_knot + 0.010 * cb14(14.000) ) # Will try all 1161 alignments, # shrinking each end by up to 0.400*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 1162: T0547.try1-al5 1.438 cost/residue, 2996 clashes 0.131 breaks # command:# naming current conformation T0547.try1-al6 # command: # TryAllAlign to optimize cost = # ( 5.395 * align_constraints + 0.433 * phobic_fit + 5.237 * pred_nb11_back(9.650) + 3.487 * pred_bys_back + 3.032 * pred_alpha_back + 11.769 * wet6.5(6.500, /log(length)) + 2.146 * pred_n_notor_back + 59.013 * noncontact_bonus + 1.605 * break + 2.341 * pred_o_sep_back + 0.619 * sidechain_clashes + 2.571 * bystroff + 0.143 * contact(8.000) + 0.939 * alpha_prev + 0.741 * pred_n_sep_back + 0.319 * ehl2_constraints + 0.198 * deep_knot + 0.010 * cb14(14.000) ) # Will try all 1161 alignments, # shrinking each end by up to 0.500*length and merging fragments shorter than 1 # Each alignment is added to result of previous insertion # best score in alignment pool out of 1162: T0547.try1-al6 1.438 cost/residue, 2996 clashes 0.131 breaks # command:# naming current conformation T0547.try1-al7 # command: # TryAllAlign to optimize cost = # ( 5.395 * align_constraints + 0.433 * phobic_fit + 5.237 * pred_nb11_back(9.650) + 3.487 * pred_bys_back + 3.032 * pred_alpha_back + 11.769 * wet6.5(6.500, /log(length)) + 2.146 * pred_n_notor_back + 59.013 * noncontact_bonus + 1.605 * break + 2.341 * pred_o_sep_back + 0.619 * sidechain_clashes + 2.571 * bystroff + 0.143 * contact(8.000) + 0.939 * alpha_prev + 0.741 * pred_n_sep_back + 0.319 * ehl2_constraints + 0.198 * deep_knot + 0.010 * cb14(14.000) ) # Will try all 1161 alignments, # shrinking each end by up to 0.000*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 1162: T0547.try1-al7+T0547-1twiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m:1twiA at pool[926] 1.430 cost/residue, 2997 clashes 0.131 breaks # command:# naming current conformation T0547.try1-al8 # command:# request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1776775184.pdb -s /var/tmp/to_scwrl_1776775184.seq -o /var/tmp/from_scwrl_1776775184.pdb > /var/tmp/scwrl_1776775184.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1776775184.pdb # conformation set from SCWRL output # command:# naming current conformation T0547.try1 # command:# Prefix for output files set to decoys/ # command:# command:# CostConform T0547.try1 costs 1.118 T0547.try1-al8 costs 1.430 T0547.try1-al7 costs 1.438 T0547.try1-al6 costs 1.438 T0547.try1-al5 costs 1.438 T0547.try1-al4 costs 1.438 T0547.try1-al3 costs 1.438 T0547.try1-al2 costs 2.367 T0547.try1-al1A costs 2.697 T0547.try1-al1 costs 4.781 T0547 costs 37.164 # command:CPU_time= 3763.752 sec, elapsed time= 5999.806 sec. # command:# reading script from file try1.costfcn # SetCost created cost = # ( 50.000 * align_constraints + 5.000 * ehl2_constraints + 5.000 * align_sheets + 10.000 * pred_nb11_back(9.650) + 10.000 * pred_alpha_back + 5.000 * pred_n_notor_back + 5.000 * pred_bys_back + 3.000 * pred_pb_back + 15.000 * wet6.5(6.500, /log(length)) + 15.000 * dry5(5.000) + 15.000 * dry6.5(6.500) + 20.000 * dry8(8.000) + 15.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 2.000 * n_ca_c + 5.000 * bad_peptide + 50.000 * soft_clashes + 10.000 * backbone_clashes + 100.000 * break + 10.000 * hbond_geom + 10.000 * hbond_geom_backbone + 20.000 * hbond_geom_beta + 40.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 5.000 * maybe_ssbond_geom ) # command:# CostConform T0547.try1 costs 383.206 T0547.try1-al8 costs 425.104 T0547.try1-al7 costs 424.934 T0547.try1-al6 costs 424.934 T0547.try1-al5 costs 424.934 T0547.try1-al4 costs 424.934 T0547.try1-al3 costs 424.934 T0547.try1-al2 costs 440.037 T0547.try1-al1A costs 510.056 T0547.try1-al1 costs 624.847 T0547 costs 594.695 # command:CPU_time= 3766.934 sec, elapsed time= 6002.997 sec. # command:# ScaleCost scaled parameters of cost = # ( 50.000 * align_constraints + 5.000 * ehl2_constraints + 5.000 * align_sheets + 10.000 * pred_nb11_back(9.650) + 10.000 * pred_alpha_back + 5.000 * pred_n_notor_back + 5.000 * pred_bys_back + 3.000 * pred_pb_back + 15.000 * wet6.5(6.500, /log(length)) + 15.000 * dry5(5.000) + 15.000 * dry6.5(6.500) + 20.000 * dry8(8.000) + 15.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 2.000 * n_ca_c + 5.000 * bad_peptide + 1.000 * soft_clashes + 10.000 * backbone_clashes + 25.000 * break + 10.000 * hbond_geom + 10.000 * hbond_geom_backbone + 20.000 * hbond_geom_beta + 40.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 5.000 * maybe_ssbond_geom ) # command:# Prefix for input files set to # command:# Reading fragments from alignment file # Attempting to read fragment alignments from file T0547.t2k.many.frag with CODEWEIGHT bystroff filtering # adding to alignment library never 1fcdA expands to /projects/compbio/data/pdb/1fcd.pdb.gz 1fcdA:# T0547 read from T0547.t2k.many.frag # 1fcdA.1.64 read from T0547.t2k.many.frag # adding 1fcdA to template set # found chain 1fcdA in template set T0547 4 :YGIDIW 1fcdA 68 :HGIQVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25855 1t3tA expands to /projects/compbio/data/pdb/1t3t.pdb.gz 1t3tA:Bad short name: N1 for alphabet: pdb_atoms Bad short name: CA1 for alphabet: pdb_atoms Bad short name: CB1 for alphabet: pdb_atoms Bad short name: C1 for alphabet: pdb_atoms Bad short name: O1 for alphabet: pdb_atoms Bad short name: O2 for alphabet: pdb_atoms # 1t3tA.1.950 read from T0547.t2k.many.frag # adding 1t3tA to template set # found chain 1t3tA in template set Warning: unaligning (T0547)Y4 (1t3tA)Y946 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1t3tA)C951 because G (3-10) conformation "forbidden" or filtered. T0547 5 :GIDI 1t3tA 947 :GLAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=25856 1ze3D expands to /projects/compbio/data/pdb/1ze3.pdb.gz 1ze3D:Skipped atom 2680, because occupancy 0.500 <= existing 0.500 in 1ze3D Skipped atom 2682, because occupancy 0.500 <= existing 0.500 in 1ze3D Skipped atom 2684, because occupancy 0.500 <= existing 0.500 in 1ze3D Skipped atom 2686, because occupancy 0.500 <= existing 0.500 in 1ze3D Skipped atom 2688, because occupancy 0.500 <= existing 0.500 in 1ze3D Skipped atom 3234, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3236, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3238, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3246, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3248, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3250, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3252, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3254, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3285, because occupancy 0.500 <= existing 0.500 in 1ze3D Skipped atom 3287, because occupancy 0.500 <= existing 0.500 in 1ze3D # 1ze3D.1.29 read from T0547.t2k.many.frag # adding 1ze3D to template set # found chain 1ze3D in template set T0547 4 :YGIDIW 1ze3D 33 :YRVDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25857 # 1pkhA.1.82 read from T0547.t2k.many.frag # found chain 1pkhA in training set T0547 4 :YGIDIW 1pkhA 86 :YNVDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25858 1jr2A expands to /projects/compbio/data/pdb/1jr2.pdb.gz 1jr2A:Skipped atom 18, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 49, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 51, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 399, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 401, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 722, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 724, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 1440, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 1456, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 1458, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 1460, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 1462, because occupancy 0.500 <= existing 0.500 in 1jr2A # 1jr2A.1.43 read from T0547.t2k.many.frag # adding 1jr2A to template set # found chain 1jr2A in template set T0547 4 :YGIDIW 1jr2A 26 :YGLEAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25859 # 1dqgA.1.33 read from T0547.t2k.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G5 (1dqgA)K38 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :Y 1dqgA 37 :Q T0547 6 :IDIW 1dqgA 39 :FRWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25861 # 1iomA.1.4 read from T0547.t2k.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)W9 (1iomA)T13 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGIDI 1iomA 8 :EGVLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=25862 1wqsA expands to /projects/compbio/data/pdb/1wqs.pdb.gz 1wqsA:# 1wqsA.1.3 read from T0547.t2k.many.frag # adding 1wqsA to template set # found chain 1wqsA in template set Warning: unaligning (T0547)Y4 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wqsA)R8 Warning: unaligning (T0547)G5 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wqsA)R8 T0547 6 :IDIW 1wqsA 9 :VVRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25863 # 3sil.1.24 read from T0547.t2k.many.frag # found chain 3sil in training set T0547 4 :YGIDIW 3sil 31 :GTTKYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25864 1wu7A expands to /projects/compbio/data/pdb/1wu7.pdb.gz 1wu7A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wu7A.1.33 read from T0547.t2k.many.frag # adding 1wu7A to template set # found chain 1wu7A in template set T0547 4 :YGIDIW 1wu7A 37 :FGFRRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25865 1zpvA expands to /projects/compbio/data/pdb/1zpv.pdb.gz 1zpvA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 327, because occupancy 0.500 <= existing 0.500 in 1zpvA Skipped atom 329, because occupancy 0.500 <= existing 0.500 in 1zpvA Skipped atom 331, because occupancy 0.500 <= existing 0.500 in 1zpvA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 465, because occupancy 0.500 <= existing 0.500 in 1zpvA Skipped atom 467, because occupancy 0.500 <= existing 0.500 in 1zpvA Skipped atom 469, because occupancy 0.500 <= existing 0.500 in 1zpvA Skipped atom 471, because occupancy 0.500 <= existing 0.500 in 1zpvA Skipped atom 473, because occupancy 0.500 <= existing 0.500 in 1zpvA Skipped atom 475, because occupancy 0.500 <= existing 0.500 in 1zpvA Skipped atom 477, because occupancy 0.500 <= existing 0.500 in 1zpvA Skipped atom 596, because occupancy 0.500 <= existing 0.500 in 1zpvA Skipped atom 598, because occupancy 0.500 <= existing 0.500 in 1zpvA Skipped atom 600, because occupancy 0.500 <= existing 0.500 in 1zpvA Skipped atom 602, because occupancy 0.500 <= existing 0.500 in 1zpvA Skipped atom 616, because occupancy 0.400 <= existing 0.600 in 1zpvA Skipped atom 618, because occupancy 0.400 <= existing 0.600 in 1zpvA Skipped atom 620, because occupancy 0.400 <= existing 0.600 in 1zpvA Skipped atom 622, because occupancy 0.400 <= existing 0.600 in 1zpvA Skipped atom 624, because occupancy 0.400 <= existing 0.600 in 1zpvA # 1zpvA.1.25 read from T0547.t2k.many.frag # adding 1zpvA to template set # found chain 1zpvA in template set T0547 4 :YGIDIW 1zpvA 26 :LGLNID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25866 # 2bhuA.1.53 read from T0547.t2k.many.frag # found chain 2bhuA in training set T0547 4 :YGIDIW 2bhuA 57 :HVMTSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25867 # 1pmhX.1.116 read from T0547.t2k.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)D7 (1pmhX)T123 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGI 1pmhX 120 :FNI T0547 8 :IW 1pmhX 124 :AN Number of specific fragments extracted= 2 number of extra gaps= 1 total=25869 # 2cs7A.1.11 read from T0547.t2k.many.frag # found chain 2cs7A in training set T0547 4 :YGIDIW 2cs7A 14 :SDIIED Number of specific fragments extracted= 1 number of extra gaps= 0 total=25870 1xi1A expands to /projects/compbio/data/pdb/1xi1.pdb.gz 1xi1A:# 1xi1A.1.16 read from T0547.t2k.many.frag # adding 1xi1A to template set # found chain 1xi1A in template set Warning: unaligning (T0547)G5 (1xi1A)D21 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1xi1A)R23 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :Y 1xi1A 20 :E T0547 6 :I 1xi1A 22 :C T0547 8 :IW 1xi1A 24 :VW Number of specific fragments extracted= 3 number of extra gaps= 2 total=25873 1ub0A expands to /projects/compbio/data/pdb/1ub0.pdb.gz 1ub0A:Skipped atom 1460, because occupancy 0.350 <= existing 0.650 in 1ub0A # 1ub0A.1.24 read from T0547.t2k.many.frag # adding 1ub0A to template set # found chain 1ub0A in template set T0547 4 :YGIDIW 1ub0A 28 :FGVYGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25874 # 2czlA.1.150 read from T0547.t2k.many.frag # found chain 2czlA in training set T0547 4 :YGIDIW 2czlA 154 :YGLVQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25875 1whsB expands to /projects/compbio/data/pdb/1whs.pdb.gz 1whsB:# 1whsB.1.86 read from T0547.t2k.many.frag # adding 1whsB to template set # found chain 1whsB in template set T0547 4 :YGIDIW 1whsB 353 :LGLPTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25876 2b8eA expands to /projects/compbio/data/pdb/2b8e.pdb.gz 2b8eA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2b8eA.1.65 read from T0547.t2k.many.frag # adding 2b8eA to template set # found chain 2b8eA in template set T0547 4 :YGIDIW 2b8eA 475 :HGIELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25877 2basA expands to /projects/compbio/data/pdb/2bas.pdb.gz 2basA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2basA.1.32 read from T0547.t2k.many.frag # adding 2basA to template set # found chain 2basA in template set T0547 4 :YGIDIW 2basA 12 :DDVLPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25878 1uocA expands to /projects/compbio/data/pdb/1uoc.pdb.gz 1uocA:# 1uocA.1.10 read from T0547.t2k.many.frag # adding 1uocA to template set # found chain 1uocA in template set T0547 4 :YGIDIW 1uocA 14 :LFVRDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25879 # 1knmA.1.38 read from T0547.t2k.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)G5 (1knmA)Q43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1knmA)A45 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :Y 1knmA 42 :Q T0547 6 :I 1knmA 44 :W T0547 8 :IW 1knmA 46 :AT Number of specific fragments extracted= 3 number of extra gaps= 2 total=25882 # 1zz1A.1.87 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G5 (1zz1A)T92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I6 (1zz1A)G93 because S (epsilon) conformation "forbidden" or filtered. T0547 4 :Y 1zz1A 91 :P T0547 7 :DIW 1zz1A 94 :GDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=25884 # 1gp0A.1.16 read from T0547.t2k.many.frag # found chain 1gp0A in training set T0547 4 :YGIDIW 1gp0A 1527 :FDLSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25885 1aol expands to /projects/compbio/data/pdb/1aol.pdb.gz 1aol:Warning: there is no chain 1aol will retry with 1aolA # 1aol.1.127 read from T0547.t2k.many.frag # adding 1aol to template set # found chain 1aol in template set T0547 4 :YGIDIW 1aol 139 :FYCASW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25886 1yq2A expands to /projects/compbio/data/pdb/1yq2.pdb.gz 1yq2A:Skipped atom 406, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 408, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 410, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 412, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 414, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 1115, because occupancy 0.500 <= existing 0.500 in 1yq2A Skipped atom 1117, because occupancy 0.500 <= existing 0.500 in 1yq2A Skipped atom 1121, because occupancy 0.500 <= existing 0.500 in 1yq2A Skipped atom 2151, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 2153, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 2155, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 2157, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 2321, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 2323, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 2395, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 2397, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 2399, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 2401, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 2403, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 2405, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 2407, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 3142, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 3144, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 3146, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 3148, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 3822, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 3824, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 4028, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 4030, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 4032, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 4034, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 5038, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 5040, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 5042, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 5044, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 5046, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 5048, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 6011, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 6013, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 6015, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 6017, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 6019, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 6021, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 6023, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 6025, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 6027, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 6029, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 6159, because occupancy 0.500 <= existing 0.500 in 1yq2A Skipped atom 6161, because occupancy 0.500 <= existing 0.500 in 1yq2A Skipped atom 6163, because occupancy 0.500 <= existing 0.500 in 1yq2A Skipped atom 6165, because occupancy 0.500 <= existing 0.500 in 1yq2A Skipped atom 7001, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 7003, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 7005, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 7007, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 7143, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 7145, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 7147, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 7149, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 7187, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 7189, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 7191, because occupancy 0.350 <= existing 0.650 in 1yq2A Skipped atom 7193, because occupancy 0.350 <= existing 0.650 in 1yq2A # 1yq2A.1.277 read from T0547.t2k.many.frag # adding 1yq2A to template set # found chain 1yq2A in template set T0547 4 :YGIDIW 1yq2A 280 :ENVEPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25887 # 1wcwA.1.25 read from T0547.t2k.many.frag # found chain 1wcwA in training set T0547 4 :YGIDIW 1wcwA 29 :LGFTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25888 1lfdA expands to /projects/compbio/data/pdb/1lfd.pdb.gz 1lfdA:# 1lfdA.1.36 read from T0547.t2k.many.frag # adding 1lfdA to template set # found chain 1lfdA in template set T0547 4 :YGIDIW 1lfdA 53 :HNLDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=25889 3prn expands to /projects/compbio/data/pdb/3prn.pdb.gz 3prn:Warning: there is no chain 3prn will retry with 3prnA Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 561, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 563, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 626, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 628, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 630, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1020, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1022, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1024, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1026, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1578, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1580, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1582, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1701, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1703, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1705, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1801, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1803, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1805, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1839, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1841, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1843, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 2054, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 2056, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 2058, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 2135, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 2137, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 2139, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 2141, because occupancy 0.500 <= existing 0.500 in 3prn # 3prn.1.58 read from T0547.t2k.many.frag # adding 3prn to template set # found chain 3prn in template set Warning: unaligning (T0547)Y4 (3prn)A62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (3prn)A65 because Y (epsilon') conformation "forbidden" or filtered. T0547 5 :GI 3prn 63 :GT T0547 8 :IW 3prn 66 :GN Number of specific fragments extracted= 2 number of extra gaps= 1 total=25891 1rifA expands to /projects/compbio/data/pdb/1rif.pdb.gz 1rifA:# 1rifA.1.71 read from T0547.t2k.many.frag # adding 1rifA to template set # found chain 1rifA in template set Warning: unaligning (T0547)Y4 (1rifA)F75 because G (3-10) conformation "forbidden" or filtered. T0547 5 :GIDIW 1rifA 76 :GYKAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25892 # 1fcdA.2.65 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)G10 (1fcdA)H74 because N (gamma') conformation "forbidden" or filtered. T0547 4 :YGIDIW 1fcdA 68 :HGIQVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=25893 # 1t3tA.2.951 read from T0547.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)Y4 (1t3tA)Y946 because G (3-10) conformation "forbidden" or filtered. T0547 5 :GIDIWG 1t3tA 947 :GLADCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25894 # 1pkhA.2.83 read from T0547.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)G10 (1pkhA)V92 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :YGIDIW 1pkhA 86 :YNVDYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=25895 # 1ze3D.2.30 read from T0547.t2k.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)G10 (1ze3D)L39 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :YGIDIW 1ze3D 33 :YRVDIY Number of specific fragments extracted= 1 number of extra gaps= 1 total=25896 # 1dqgA.2.34 read from T0547.t2k.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G5 (1dqgA)K38 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :Y 1dqgA 37 :Q T0547 6 :IDIWG 1dqgA 39 :FRWVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25898 # 1jr2A.2.44 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)Y4 (1jr2A)Y26 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1jr2A)L32 because E (beta_S) conformation "forbidden" or filtered. T0547 5 :GIDIW 1jr2A 27 :GLEAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=25899 # 1wqsA.2.4 read from T0547.t2k.many.frag # found chain 1wqsA in template set Warning: unaligning (T0547)Y4 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wqsA)R8 Warning: unaligning (T0547)G5 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wqsA)R8 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wqsA)S14 T0547 6 :IDIW 1wqsA 9 :VVRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=25900 # 2bhuA.2.54 read from T0547.t2k.many.frag # found chain 2bhuA in training set T0547 4 :YGIDIWG 2bhuA 57 :HVMTSLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25901 # 3sil.2.25 read from T0547.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0547)G5 (3sil)T32 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :Y 3sil 31 :G T0547 6 :IDIWG 3sil 33 :TKYFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=25903 # 1wu7A.2.34 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 4 :YGIDIWG 1wu7A 37 :FGFRRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25904 # 1zz1A.2.88 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G5 (1zz1A)T92 because G (3-10) conformation "forbidden" or filtered. T0547 4 :Y 1zz1A 91 :P T0547 6 :IDIWG 1zz1A 93 :GGDTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25906 # 1a62.2.42 read from T0547.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)G10 (1a62)G51 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGIDIW 1a62 45 :SGEDIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=25907 # 1zpvA.2.26 read from T0547.t2k.many.frag # found chain 1zpvA in template set Warning: unaligning (T0547)G10 (1zpvA)D32 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGIDIW 1zpvA 26 :LGLNID Number of specific fragments extracted= 1 number of extra gaps= 1 total=25908 # 1iomA.2.5 read from T0547.t2k.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)W9 (1iomA)T13 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGIDI 1iomA 8 :EGVLF T0547 10 :G 1iomA 14 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=25910 # 1wcwA.2.26 read from T0547.t2k.many.frag # found chain 1wcwA in training set T0547 4 :YGIDIWG 1wcwA 29 :LGFTPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25911 # 2czlA.2.151 read from T0547.t2k.many.frag # found chain 2czlA in training set T0547 4 :YGIDIWG 2czlA 154 :YGLVQVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25912 # 1knmA.2.39 read from T0547.t2k.many.frag # found chain 1knmA in training set T0547 4 :YGIDIWG 1knmA 42 :QQWAATD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25913 # 1ub0A.2.25 read from T0547.t2k.many.frag # found chain 1ub0A in template set T0547 4 :YGIDIWG 1ub0A 28 :FGVYGTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25914 # 2cs7A.2.12 read from T0547.t2k.many.frag # found chain 2cs7A in training set T0547 4 :YGIDIWG 2cs7A 14 :SDIIEDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25915 # 1pmhX.2.117 read from T0547.t2k.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)D7 (1pmhX)T123 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1pmhX)A126 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YGI 1pmhX 120 :FNI T0547 8 :IW 1pmhX 124 :AN Number of specific fragments extracted= 2 number of extra gaps= 2 total=25917 2fokA expands to /projects/compbio/data/pdb/2fok.pdb.gz 2fokA:# 2fokA.2.234 read from T0547.t2k.many.frag # adding 2fokA to template set # found chain 2fokA in template set T0547 4 :YGIDIWG 2fokA 237 :LGLVKQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25918 # 1whsB.2.87 read from T0547.t2k.many.frag # found chain 1whsB in template set Warning: unaligning (T0547)D7 (1whsB)P364 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YGI 1whsB 353 :LGL T0547 8 :IWG 1whsB 365 :TTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=25920 # 1xi1A.2.17 read from T0547.t2k.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)G5 (1xi1A)D21 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1xi1A)R23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1xi1A)W25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1xi1A)A26 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :Y 1xi1A 20 :E T0547 6 :I 1xi1A 22 :C T0547 8 :I 1xi1A 24 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=25923 # 1wubA.2.82 read from T0547.t2k.many.frag # found chain 1wubA in training set T0547 4 :YGIDIWG 1wubA 85 :TQIEPLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25924 1na6A expands to /projects/compbio/data/pdb/1na6.pdb.gz 1na6A:# 1na6A.2.94 read from T0547.t2k.many.frag # adding 1na6A to template set # found chain 1na6A in template set T0547 4 :YGIDIWG 1na6A 97 :KRITRWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25925 # 1rifA.2.72 read from T0547.t2k.many.frag # found chain 1rifA in template set Warning: unaligning (T0547)Y4 (1rifA)F75 because G (3-10) conformation "forbidden" or filtered. T0547 5 :GIDIWG 1rifA 76 :GYKAWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25926 # 2b8eA.2.66 read from T0547.t2k.many.frag # found chain 2b8eA in template set Warning: unaligning (T0547)Y4 (2b8eA)H475 because G (3-10) conformation "forbidden" or filtered. T0547 5 :GIDIWG 2b8eA 476 :GIELGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25927 # 1gp0A.2.17 read from T0547.t2k.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)I6 (1gp0A)L1529 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1gp0A)S1533 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YG 1gp0A 1527 :FD T0547 7 :DIW 1gp0A 1530 :SSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=25929 1o7dE expands to /projects/compbio/data/pdb/1o7d.pdb.gz 1o7dE:# 1o7dE.2.16 read from T0547.t2k.many.frag # adding 1o7dE to template set # found chain 1o7dE in template set Warning: unaligning (T0547)G5 (1o7dE)T904 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :Y 1o7dE 903 :L T0547 6 :IDIWG 1o7dE 905 :LARWG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25931 # 1aol.2.128 read from T0547.t2k.many.frag # found chain 1aol in template set Warning: unaligning (T0547)Y4 (1aol)F139 because L (left) conformation "forbidden" or filtered. T0547 5 :GIDIWG 1aol 140 :YCASWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25932 # 1t3tA.3.952 read from T0547.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)Y4 (1t3tA)Y946 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1t3tA)C951 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1t3tA)V952 because P (beta_P) conformation "forbidden" or filtered. T0547 5 :GIDI 1t3tA 947 :GLAD T0547 11 :N 1t3tA 953 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=25934 # 1fcdA.3.66 read from T0547.t2k.many.frag # found chain 1fcdA in template set T0547 4 :YGIDIWGN 1fcdA 68 :HGIQVVHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25935 # 2bhuA.3.55 read from T0547.t2k.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)G5 (2bhuA)V58 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (2bhuA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (2bhuA)G64 because T (delta_L) conformation "forbidden" or filtered. T0547 4 :Y 2bhuA 57 :H T0547 6 :IDIW 2bhuA 59 :MTSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=25937 # 1dqgA.3.35 read from T0547.t2k.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G5 (1dqgA)K38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1dqgA)S43 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :Y 1dqgA 37 :Q T0547 6 :IDIW 1dqgA 39 :FRWV T0547 11 :N 1dqgA 44 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=25940 # 1pkhA.3.84 read from T0547.t2k.many.frag # found chain 1pkhA in training set T0547 4 :YGIDIWGN 1pkhA 86 :YNVDYVVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25941 # 1wqsA.3.5 read from T0547.t2k.many.frag # found chain 1wqsA in template set Warning: unaligning (T0547)Y4 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wqsA)R8 Warning: unaligning (T0547)G5 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wqsA)R8 Warning: unaligning (T0547)D7 (1wqsA)V10 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wqsA)S14 Warning: unaligning (T0547)N11 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wqsA)S14 T0547 6 :I 1wqsA 9 :V T0547 8 :IW 1wqsA 11 :RF Number of specific fragments extracted= 2 number of extra gaps= 2 total=25943 # 1ze3D.3.31 read from T0547.t2k.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)N11 (1ze3D)N40 because L (left) conformation "forbidden" or filtered. T0547 4 :YGIDIWG 1ze3D 33 :YRVDIYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25944 # 1zz1A.3.89 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G5 (1zz1A)T92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I6 (1zz1A)G93 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1zz1A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1zz1A)T96 because G (3-10) conformation "forbidden" or filtered. T0547 4 :Y 1zz1A 91 :P T0547 8 :I 1zz1A 95 :D T0547 10 :GN 1zz1A 97 :GD Number of specific fragments extracted= 3 number of extra gaps= 2 total=25947 # 1jr2A.3.45 read from T0547.t2k.many.frag # found chain 1jr2A in template set T0547 4 :YGIDIWGN 1jr2A 26 :YGLEATLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25948 # 1a62.3.43 read from T0547.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)N11 (1a62)D52 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGIDIWG 1a62 45 :SGEDIFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=25949 # 1iomA.3.6 read from T0547.t2k.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)D7 (1iomA)L11 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :YGI 1iomA 8 :EGV T0547 8 :IWGN 1iomA 12 :FTES Number of specific fragments extracted= 2 number of extra gaps= 1 total=25951 # 3sil.3.26 read from T0547.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0547)G10 (3sil)R37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (3sil)I38 because L (left) conformation "forbidden" or filtered. T0547 4 :YGIDIW 3sil 31 :GTTKYF Number of specific fragments extracted= 1 number of extra gaps= 1 total=25952 # 1wu7A.3.35 read from T0547.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G10 (1wu7A)D43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1wu7A)F44 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGIDIW 1wu7A 37 :FGFRRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=25953 # 1wubA.3.83 read from T0547.t2k.many.frag # found chain 1wubA in training set Warning: unaligning (T0547)W9 (1wubA)L90 because G (3-10) conformation "forbidden" or filtered. T0547 4 :YGIDI 1wubA 85 :TQIEP T0547 10 :GN 1wubA 91 :GG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25955 # 1o7dE.3.17 read from T0547.t2k.many.frag # found chain 1o7dE in template set Warning: unaligning (T0547)G5 (1o7dE)T904 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1o7dE)A906 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :Y 1o7dE 903 :L T0547 6 :I 1o7dE 905 :L T0547 8 :IWGN 1o7dE 907 :RWGP Number of specific fragments extracted= 3 number of extra gaps= 2 total=25958 # 1yu0A.3.63 read from T0547.t2k.many.frag # found chain 1yu0A in training set T0547 4 :YGIDIWGN 1yu0A 65 :VAFTRTGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25959 # 1xi1A.3.18 read from T0547.t2k.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)G5 (1xi1A)D21 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1xi1A)Y27 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :Y 1xi1A 20 :E T0547 6 :IDIWG 1xi1A 22 :CRVWA Number of specific fragments extracted= 2 number of extra gaps= 2 total=25961 # 1na6A.3.95 read from T0547.t2k.many.frag # found chain 1na6A in template set Warning: unaligning (T0547)G5 (1na6A)R98 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1na6A)T100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I8 (1na6A)R101 because L (left) conformation "forbidden" or filtered. T0547 4 :Y 1na6A 97 :K T0547 6 :I 1na6A 99 :I T0547 9 :WGN 1na6A 102 :WGR Number of specific fragments extracted= 3 number of extra gaps= 2 total=25964 # 2cs7A.3.13 read from T0547.t2k.many.frag # found chain 2cs7A in training set T0547 4 :YGIDIWGN 2cs7A 14 :SDIIEDTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25965 # 1zpvA.3.27 read from T0547.t2k.many.frag # found chain 1zpvA in template set Warning: unaligning (T0547)G10 (1zpvA)D32 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGIDIW 1zpvA 26 :LGLNID T0547 11 :N 1zpvA 33 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=25967 # 2czlA.3.152 read from T0547.t2k.many.frag # found chain 2czlA in training set Warning: unaligning (T0547)G10 (2czlA)V160 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :YGIDIW 2czlA 154 :YGLVQV T0547 11 :N 2czlA 161 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=25969 # 1knmA.3.40 read from T0547.t2k.many.frag # found chain 1knmA in training set T0547 4 :YGIDIWGN 1knmA 42 :QQWAATDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25970 # 2fokA.3.235 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)G10 (2fokA)G243 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :YGIDIW 2fokA 237 :LGLVKQ T0547 11 :N 2fokA 244 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=25972 # 1qmgA.3.15 read from T0547.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)G5 (1qmgA)D89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1qmgA)K94 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :Y 1qmgA 88 :F T0547 6 :IDIW 1qmgA 90 :SSVF T0547 11 :N 1qmgA 95 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=25975 # 1pmhX.3.118 read from T0547.t2k.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)G10 (1pmhX)A126 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YGIDIW 1pmhX 120 :FNITAN T0547 11 :N 1pmhX 127 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=25977 # 1gp0A.3.18 read from T0547.t2k.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)G10 (1gp0A)S1533 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YGIDIW 1gp0A 1527 :FDLSSL T0547 11 :N 1gp0A 1534 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=25979 # 1yq2A.3.279 read from T0547.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)G10 (1yq2A)S286 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGIDIW 1yq2A 280 :ENVEPW T0547 11 :N 1yq2A 287 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=25981 1uc2A expands to /projects/compbio/data/pdb/1uc2.pdb.gz 1uc2A:# 1uc2A.3.191 read from T0547.t2k.many.frag # adding 1uc2A to template set # found chain 1uc2A in template set Warning: unaligning (T0547)D7 (1uc2A)G196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1uc2A)S200 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGI 1uc2A 193 :PQL T0547 8 :IWG 1uc2A 197 :SLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=25983 # 1onwA.3.16 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)I6 (1onwA)P20 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1onwA)R23 because G (3-10) conformation "forbidden" or filtered. T0547 4 :YG 1onwA 18 :YA T0547 7 :DI 1onwA 21 :ED T0547 10 :GN 1onwA 24 :GI Number of specific fragments extracted= 3 number of extra gaps= 2 total=25986 2a50B expands to /projects/compbio/data/pdb/2a50.pdb.gz 2a50B:Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 775, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 777, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 779, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 781, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 785, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 889, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 891, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 893, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 895, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 897, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 899, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 962, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 964, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 966, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 968, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 970, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 972, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 974, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 976, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 978, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 1832, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 1834, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 1836, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 1838, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 1840, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 1842, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 1844, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 1846, because occupancy 0.500 <= existing 0.500 in 2a50B Skipped atom 1848, because occupancy 0.500 <= existing 0.500 in 2a50B # 2a50B.3.69 read from T0547.t2k.many.frag # adding 2a50B to template set # found chain 2a50B in template set Warning: unaligning (T0547)D7 (2a50B)G138 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (2a50B)E141 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YGI 2a50B 135 :NKA T0547 8 :IW 2a50B 139 :RW T0547 11 :N 2a50B 142 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=25989 # 1fcdA.4.67 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)Y4 (1fcdA)H68 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1fcdA)Q71 because P (beta_P) conformation "forbidden" or filtered. T0547 5 :GI 1fcdA 69 :GI T0547 8 :IWGNE 1fcdA 72 :VVHDS Number of specific fragments extracted= 2 number of extra gaps= 2 total=25991 # 2bhuA.4.56 read from T0547.t2k.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)G5 (2bhuA)V58 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2bhuA)G65 because T (delta_L) conformation "forbidden" or filtered. T0547 4 :Y 2bhuA 57 :H T0547 6 :IDIWGN 2bhuA 59 :MTSLGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=25993 # 1t3tA.4.953 read from T0547.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)E12 (1t3tA)Y954 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YGIDIWGN 1t3tA 946 :YGLADCVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=25994 # 1dqgA.4.36 read from T0547.t2k.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G5 (1dqgA)K38 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :Y 1dqgA 37 :Q T0547 6 :IDIWGNE 1dqgA 39 :FRWVSDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25996 # 2cyjA.4.0 read from T0547.t2k.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)Y4 because first residue in template chain is (2cyjA)M1 T0547 5 :GIDIWGNE 2cyjA 2 :KIEEVRFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25997 # 1zz1A.4.90 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)I6 (1zz1A)G93 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1zz1A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1zz1A)D98 because G (3-10) conformation "forbidden" or filtered. T0547 4 :YG 1zz1A 91 :PT T0547 8 :IWG 1zz1A 95 :DTG T0547 12 :E 1zz1A 99 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=26000 # 1a62.4.44 read from T0547.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)N11 (1a62)D52 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGIDIWG 1a62 45 :SGEDIFG T0547 12 :E 1a62 53 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=26002 # 1yu0A.4.64 read from T0547.t2k.many.frag # found chain 1yu0A in training set T0547 4 :YGIDIWGNE 1yu0A 65 :VAFTRTGNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26003 # 1pkhA.4.85 read from T0547.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)E12 (1pkhA)G94 because S (epsilon) conformation "forbidden" or filtered. T0547 4 :YGIDIWGN 1pkhA 86 :YNVDYVVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26004 # 1wqsA.4.6 read from T0547.t2k.many.frag # found chain 1wqsA in template set Warning: unaligning (T0547)Y4 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wqsA)R8 Warning: unaligning (T0547)G5 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wqsA)R8 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wqsA)S14 Warning: unaligning (T0547)N11 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wqsA)S14 T0547 6 :IDIW 1wqsA 9 :VVRF T0547 12 :E 1wqsA 15 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=26006 # 1ze3D.4.32 read from T0547.t2k.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)G5 (1ze3D)R34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1ze3D)N41 because L (left) conformation "forbidden" or filtered. T0547 4 :Y 1ze3D 33 :Y T0547 6 :IDIWGN 1ze3D 35 :VDIYLN Number of specific fragments extracted= 2 number of extra gaps= 2 total=26008 # 1o7dE.4.18 read from T0547.t2k.many.frag # found chain 1o7dE in template set Warning: unaligning (T0547)D7 (1o7dE)A906 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGI 1o7dE 903 :LTL T0547 8 :IWGNE 1o7dE 907 :RWGPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26010 # 1iomA.4.7 read from T0547.t2k.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)W9 (1iomA)T13 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGIDI 1iomA 8 :EGVLF T0547 10 :GNE 1iomA 14 :ESR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26012 # 1jr2A.4.46 read from T0547.t2k.many.frag # found chain 1jr2A in template set T0547 4 :YGIDIWGNE 1jr2A 26 :YGLEATLIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26013 # 1na6A.4.96 read from T0547.t2k.many.frag # found chain 1na6A in template set Warning: unaligning (T0547)G5 (1na6A)R98 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I8 (1na6A)R101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1na6A)G103 because S (epsilon) conformation "forbidden" or filtered. T0547 4 :Y 1na6A 97 :K T0547 6 :ID 1na6A 99 :IT T0547 9 :W 1na6A 102 :W T0547 11 :NE 1na6A 104 :RG Number of specific fragments extracted= 4 number of extra gaps= 3 total=26017 # 1wubA.4.84 read from T0547.t2k.many.frag # found chain 1wubA in training set Warning: unaligning (T0547)W9 (1wubA)L90 because G (3-10) conformation "forbidden" or filtered. T0547 4 :YGIDI 1wubA 85 :TQIEP T0547 10 :GNE 1wubA 91 :GGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26019 # 1jovA.4.90 read from T0547.t2k.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)G10 (1jovA)Q97 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :YGIDIW 1jovA 91 :ARIRLW T0547 11 :NE 1jovA 98 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26021 # 3sil.4.27 read from T0547.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0547)Y4 (3sil)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G5 (3sil)T32 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (3sil)R37 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIW 3sil 33 :TKYF T0547 11 :NE 3sil 38 :IP Number of specific fragments extracted= 2 number of extra gaps= 2 total=26023 # 1qmgA.4.16 read from T0547.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)N11 (1qmgA)K95 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YGIDIWG 1qmgA 88 :FDSSVFK T0547 12 :E 1qmgA 96 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=26025 # 1xi1A.4.19 read from T0547.t2k.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)G5 (1xi1A)D21 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1xi1A)W25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1xi1A)G28 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :Y 1xi1A 20 :E T0547 6 :IDI 1xi1A 22 :CRV T0547 10 :GN 1xi1A 26 :AY Number of specific fragments extracted= 3 number of extra gaps= 3 total=26028 # 1knmA.4.41 read from T0547.t2k.many.frag # found chain 1knmA in training set T0547 4 :YGIDIWGNE 1knmA 42 :QQWAATDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26029 # 2cs7A.4.14 read from T0547.t2k.many.frag # found chain 2cs7A in training set Warning: unaligning (T0547)G10 (2cs7A)T20 because G (3-10) conformation "forbidden" or filtered. T0547 4 :YGIDIW 2cs7A 14 :SDIIED T0547 11 :NE 2cs7A 21 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26031 # 1gu7A.4.81 read from T0547.t2k.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)G10 (1gu7A)G110 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YGIDIW 1gu7A 104 :FEVIKV T0547 11 :NE 1gu7A 111 :SN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26033 1o9wA expands to /projects/compbio/data/pdb/1o9w.pdb.gz 1o9wA:# 1o9wA.4.35 read from T0547.t2k.many.frag # adding 1o9wA to template set # found chain 1o9wA in template set Warning: unaligning (T0547)D7 (1o9wA)G39 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGI 1o9wA 36 :NKI T0547 8 :IWGNE 1o9wA 40 :YQNAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26035 # 1wu7A.4.36 read from T0547.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G10 (1wu7A)D43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1wu7A)F44 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGIDIW 1wu7A 37 :FGFRRI T0547 12 :E 1wu7A 45 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=26037 # 1pmhX.4.119 read from T0547.t2k.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)D7 (1pmhX)T123 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1pmhX)A126 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YGI 1pmhX 120 :FNI T0547 8 :IW 1pmhX 124 :AN T0547 11 :NE 1pmhX 127 :GK Number of specific fragments extracted= 3 number of extra gaps= 2 total=26040 # 1jiwI.4.78 read from T0547.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)E12 (1jiwI)G87 because L (left) conformation "forbidden" or filtered. T0547 4 :YGIDIWGN 1jiwI 79 :MLLGRQGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26041 # 1onwA.4.17 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)G5 (1onwA)A19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I6 (1onwA)P20 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1onwA)R23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1onwA)G24 because S (epsilon) conformation "forbidden" or filtered. T0547 4 :Y 1onwA 18 :Y T0547 7 :DI 1onwA 21 :ED T0547 11 :NE 1onwA 25 :IC Number of specific fragments extracted= 3 number of extra gaps= 2 total=26044 # 1yq2A.4.280 read from T0547.t2k.many.frag # found chain 1yq2A in template set T0547 4 :YGIDIWGNE 1yq2A 280 :ENVEPWSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26045 # 1uc2A.4.192 read from T0547.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)D7 (1uc2A)G196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1uc2A)G201 because S (epsilon) conformation "forbidden" or filtered. T0547 4 :YGI 1uc2A 193 :PQL T0547 8 :IWGN 1uc2A 197 :SLGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=26047 # 1fcdA.5.68 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)N11 (1fcdA)D75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1fcdA)A77 because P (beta_P) conformation "forbidden" or filtered. T0547 5 :GIDIWG 1fcdA 69 :GIQVVH T0547 12 :E 1fcdA 76 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=26049 # 2bhuA.5.57 read from T0547.t2k.many.frag # found chain 2bhuA in training set T0547 5 :GIDIWGNEN 2bhuA 58 :VMTSLGGGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26050 # 2cyjA.5.1 read from T0547.t2k.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)G5 (2cyjA)K2 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (2cyjA)R7 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIW 2cyjA 3 :IEEV T0547 11 :NEN 2cyjA 8 :FGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=26052 # 1dqgA.5.37 read from T0547.t2k.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G5 (1dqgA)K38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1dqgA)S43 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIW 1dqgA 39 :FRWV T0547 11 :NEN 1dqgA 44 :DSQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=26054 # 1zz1A.5.91 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G5 (1zz1A)T92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1zz1A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1zz1A)T96 because G (3-10) conformation "forbidden" or filtered. T0547 6 :I 1zz1A 93 :G T0547 8 :I 1zz1A 95 :D T0547 10 :GNEN 1zz1A 97 :GDGI Number of specific fragments extracted= 3 number of extra gaps= 3 total=26057 # 1o9wA.5.36 read from T0547.t2k.many.frag # found chain 1o9wA in template set T0547 5 :GIDIWGNEN 1o9wA 37 :KIGYQNANV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26058 # 1t3tA.5.954 read from T0547.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)G10 (1t3tA)V952 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1t3tA)Y954 because P (beta_P) conformation "forbidden" or filtered. T0547 5 :GIDIW 1t3tA 947 :GLADC T0547 11 :N 1t3tA 953 :H T0547 13 :N 1t3tA 955 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=26061 # 1yu0A.5.65 read from T0547.t2k.many.frag # found chain 1yu0A in training set T0547 5 :GIDIWGNEN 1yu0A 66 :AFTRTGNAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26062 # 1a62.5.45 read from T0547.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)N11 (1a62)D52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1a62)G53 because Y (epsilon') conformation "forbidden" or filtered. T0547 5 :GIDIWG 1a62 46 :GEDIFG T0547 13 :N 1a62 54 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=26064 # 1iomA.5.8 read from T0547.t2k.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)I8 (1iomA)F12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1iomA)T13 because Y (epsilon') conformation "forbidden" or filtered. T0547 5 :GID 1iomA 9 :GVL T0547 10 :GNEN 1iomA 14 :ESRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=26066 # 1o7dE.5.19 read from T0547.t2k.many.frag # found chain 1o7dE in template set Warning: unaligning (T0547)D7 (1o7dE)A906 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1o7dE)E911 because D (zeta) conformation "forbidden" or filtered. T0547 5 :GI 1o7dE 904 :TL T0547 8 :IWGN 1o7dE 907 :RWGP T0547 13 :N 1o7dE 912 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=26069 # 1gu7A.5.82 read from T0547.t2k.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)G5 (1gu7A)E105 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1gu7A)G110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1gu7A)V113 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDIW 1gu7A 106 :VIKV T0547 11 :NE 1gu7A 111 :SN Number of specific fragments extracted= 2 number of extra gaps= 3 total=26071 # 2cs7A.5.15 read from T0547.t2k.many.frag # found chain 2cs7A in training set T0547 5 :GIDIWGNEN 2cs7A 15 :DIIEDTGDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26072 # 1wubA.5.85 read from T0547.t2k.many.frag # found chain 1wubA in training set Warning: unaligning (T0547)D7 (1wubA)E88 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1wubA)L90 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1wubA)G92 because S (epsilon) conformation "forbidden" or filtered. T0547 5 :GI 1wubA 86 :QI T0547 8 :I 1wubA 89 :P T0547 10 :G 1wubA 91 :G T0547 12 :EN 1wubA 93 :NR Number of specific fragments extracted= 4 number of extra gaps= 3 total=26076 # 1wqsA.5.7 read from T0547.t2k.many.frag # found chain 1wqsA in template set Warning: unaligning (T0547)G5 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wqsA)R8 Warning: unaligning (T0547)D7 (1wqsA)V10 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1wqsA)F12 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wqsA)S14 Warning: unaligning (T0547)N11 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wqsA)S14 Warning: unaligning (T0547)E12 (1wqsA)G15 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1wqsA)W16 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :I 1wqsA 9 :V T0547 8 :I 1wqsA 11 :R Number of specific fragments extracted= 2 number of extra gaps= 3 total=26078 # 1na6A.5.97 read from T0547.t2k.many.frag # found chain 1na6A in template set Warning: unaligning (T0547)G5 (1na6A)R98 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1na6A)T100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1na6A)G103 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1na6A)R104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1na6A)S106 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :I 1na6A 99 :I T0547 8 :IW 1na6A 101 :RW T0547 12 :E 1na6A 105 :G Number of specific fragments extracted= 3 number of extra gaps= 4 total=26081 # 1ze3D.5.33 read from T0547.t2k.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)G5 (1ze3D)R34 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDIWGNEN 1ze3D 35 :VDIYLNNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=26082 # 1jovA.5.91 read from T0547.t2k.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)G5 (1jovA)R92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1jovA)H100 because E (beta_S) conformation "forbidden" or filtered. T0547 6 :IDIWGNE 1jovA 93 :IRLWQLS Number of specific fragments extracted= 1 number of extra gaps= 2 total=26083 # 1jr2A.5.47 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)D7 (1jr2A)E29 because N (gamma') conformation "forbidden" or filtered. T0547 5 :GI 1jr2A 27 :GL T0547 8 :IWGNEN 1jr2A 30 :ATLIPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26085 # 1pkhA.5.86 read from T0547.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)N11 (1pkhA)E93 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1pkhA)G94 because S (epsilon) conformation "forbidden" or filtered. T0547 5 :GIDIWG 1pkhA 87 :NVDYVV T0547 13 :N 1pkhA 95 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=26087 # 3sil.5.28 read from T0547.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0547)G10 (3sil)R37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (3sil)I38 because L (left) conformation "forbidden" or filtered. T0547 5 :GIDIW 3sil 32 :TTKYF T0547 12 :EN 3sil 39 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26089 # 1knmA.5.42 read from T0547.t2k.many.frag # found chain 1knmA in training set T0547 5 :GIDIWGNEN 1knmA 43 :QWAATDAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26090 # 1xi1A.5.20 read from T0547.t2k.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)G5 (1xi1A)D21 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1xi1A)R23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1xi1A)Y27 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :I 1xi1A 22 :C T0547 8 :IWG 1xi1A 24 :VWA T0547 12 :EN 1xi1A 28 :GY Number of specific fragments extracted= 3 number of extra gaps= 3 total=26093 # 1jiwI.5.79 read from T0547.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)D7 (1jiwI)G82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1jiwI)G85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1jiwI)G87 because L (left) conformation "forbidden" or filtered. T0547 5 :GI 1jiwI 80 :LL T0547 8 :IW 1jiwI 83 :RQ T0547 11 :N 1jiwI 86 :E T0547 13 :N 1jiwI 88 :D Number of specific fragments extracted= 4 number of extra gaps= 3 total=26097 # 1pmhX.5.120 read from T0547.t2k.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)D7 (1pmhX)T123 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1pmhX)K129 because P (beta_P) conformation "forbidden" or filtered. T0547 5 :GI 1pmhX 121 :NI T0547 8 :IWGNE 1pmhX 124 :ANAGK Number of specific fragments extracted= 2 number of extra gaps= 2 total=26099 # 1qmgA.5.17 read from T0547.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)G10 (1qmgA)K94 because P (beta_P) conformation "forbidden" or filtered. T0547 5 :GIDIW 1qmgA 89 :DSSVF T0547 11 :NEN 1qmgA 95 :KEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26101 1vqoZ expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoZ:# 1vqoZ.5.36 read from T0547.t2k.many.frag # adding 1vqoZ to template set # found chain 1vqoZ in template set Warning: unaligning (T0547)W9 (1vqoZ)Q50 because G (3-10) conformation "forbidden" or filtered. T0547 5 :GIDI 1vqoZ 46 :RVDR T0547 10 :GNEN 1vqoZ 51 :GTGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26103 # 1uc2A.5.193 read from T0547.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)G5 (1uc2A)Q194 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1uc2A)S200 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1uc2A)G201 because S (epsilon) conformation "forbidden" or filtered. T0547 6 :IDIWG 1uc2A 195 :LGSLG T0547 13 :N 1uc2A 202 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=26105 # 1euwA.5.99 read from T0547.t2k.many.frag # found chain 1euwA in training set T0547 5 :GIDIWGNEN 1euwA 100 :SVWNRGQDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26106 # 1rutX.5.23 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1rutX)H44 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1rutX)H44 T0547 5 :GIDI 1rutX 39 :MDSY T0547 11 :NEN 1rutX 45 :SRC Number of specific fragments extracted= 2 number of extra gaps= 1 total=26108 # 1fcdA.6.69 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)G10 (1fcdA)H74 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1fcdA)D75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1fcdA)S76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1fcdA)A77 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDIW 1fcdA 70 :IQVV T0547 14 :F 1fcdA 78 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=26110 # 1o9wA.6.37 read from T0547.t2k.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)D7 (1o9wA)G39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1o9wA)N42 because E (beta_S) conformation "forbidden" or filtered. T0547 6 :I 1o9wA 38 :I T0547 8 :IW 1o9wA 40 :YQ T0547 11 :NENF 1o9wA 43 :ANVW Number of specific fragments extracted= 3 number of extra gaps= 2 total=26113 # 1zz1A.6.92 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)E12 (1zz1A)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 6 :IDIWGN 1zz1A 93 :GGDTGD T0547 13 :NF 1zz1A 100 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26115 # 1dqgA.6.38 read from T0547.t2k.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)D7 (1dqgA)R40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1dqgA)S43 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :I 1dqgA 39 :F T0547 8 :IW 1dqgA 41 :WV T0547 11 :NENF 1dqgA 44 :DSQI Number of specific fragments extracted= 3 number of extra gaps= 2 total=26118 # 2bhuA.6.58 read from T0547.t2k.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)W9 (2bhuA)L62 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (2bhuA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (2bhuA)G64 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2bhuA)G65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2bhuA)I66 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDI 2bhuA 59 :MTS T0547 14 :F 2bhuA 67 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=26120 # 1a62.6.46 read from T0547.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)G10 (1a62)G51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1a62)D52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1a62)G53 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIW 1a62 47 :EDIF T0547 13 :NF 1a62 54 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26122 # 2cyjA.6.2 read from T0547.t2k.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)G10 (2cyjA)R7 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIW 2cyjA 3 :IEEV T0547 11 :NENF 2cyjA 8 :FGLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26124 # 1t3tA.6.955 read from T0547.t2k.many.frag # found chain 1t3tA in template set T0547 6 :IDIWGNENF 1t3tA 948 :LADCVHYLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26125 # 1yu0A.6.66 read from T0547.t2k.many.frag # found chain 1yu0A in training set Warning: unaligning (T0547)D7 (1yu0A)T68 because E (beta_S) conformation "forbidden" or filtered. T0547 6 :I 1yu0A 67 :F T0547 8 :IWGNENF 1yu0A 69 :RTGNATA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26127 # 1o7dE.6.20 read from T0547.t2k.many.frag # found chain 1o7dE in template set T0547 6 :IDIWGNENF 1o7dE 905 :LARWGPETL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26128 # 2cs7A.6.16 read from T0547.t2k.many.frag # found chain 2cs7A in training set Warning: unaligning (T0547)N11 (2cs7A)G21 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2cs7A)A23 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIWG 2cs7A 16 :IIEDT T0547 12 :E 2cs7A 22 :D T0547 14 :F 2cs7A 24 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=26131 # 1iomA.6.9 read from T0547.t2k.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)G10 (1iomA)E14 because E (beta_S) conformation "forbidden" or filtered. T0547 6 :IDIW 1iomA 10 :VLFT T0547 11 :NENF 1iomA 15 :SRMC Number of specific fragments extracted= 2 number of extra gaps= 1 total=26133 # 1wqsA.6.8 read from T0547.t2k.many.frag # found chain 1wqsA in template set Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wqsA)S14 Warning: unaligning (T0547)N11 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wqsA)S14 Warning: unaligning (T0547)N13 (1wqsA)W16 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIW 1wqsA 9 :VVRF T0547 12 :E 1wqsA 15 :G T0547 14 :F 1wqsA 17 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=26136 # 1wubA.6.86 read from T0547.t2k.many.frag # found chain 1wubA in training set Warning: unaligning (T0547)G10 (1wubA)G91 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1wubA)R94 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDIW 1wubA 87 :IEPL T0547 11 :NE 1wubA 92 :GN T0547 14 :F 1wubA 95 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=26139 # 1gu7A.6.83 read from T0547.t2k.many.frag # found chain 1gu7A in training set T0547 6 :IDIWGNENF 1gu7A 106 :VIKVGSNVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26140 # 1jovA.6.92 read from T0547.t2k.many.frag # found chain 1jovA in training set T0547 6 :IDIWGNENF 1jovA 93 :IRLWQLSHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26141 # 1pkhA.6.87 read from T0547.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)G10 (1pkhA)V92 because E (beta_S) conformation "forbidden" or filtered. T0547 6 :IDIW 1pkhA 88 :VDYV T0547 11 :NENF 1pkhA 93 :EGGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26143 # 3sil.6.29 read from T0547.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0547)G10 (3sil)R37 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIW 3sil 33 :TKYF T0547 11 :NENF 3sil 38 :IPAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=26145 # 1ze3D.6.34 read from T0547.t2k.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)G10 (1ze3D)L39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1ze3D)N40 because L (left) conformation "forbidden" or filtered. T0547 6 :IDIW 1ze3D 35 :VDIY T0547 12 :ENF 1ze3D 41 :NGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26147 # 1vqoZ.6.37 read from T0547.t2k.many.frag # found chain 1vqoZ in template set Warning: unaligning (T0547)E12 (1vqoZ)G53 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1vqoZ)I54 because E (beta_S) conformation "forbidden" or filtered. T0547 6 :IDIWGN 1vqoZ 47 :VDRQGT T0547 14 :F 1vqoZ 55 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=26149 # 1knmA.6.43 read from T0547.t2k.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)D7 (1knmA)A45 because E (beta_S) conformation "forbidden" or filtered. T0547 6 :I 1knmA 44 :W T0547 8 :IWGNENF 1knmA 46 :ATDAGEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26151 # 1pmhX.6.121 read from T0547.t2k.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)D7 (1pmhX)T123 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1pmhX)A126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1pmhX)G127 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1pmhX)K128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1pmhX)K129 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :I 1pmhX 122 :I T0547 8 :IW 1pmhX 124 :AN T0547 14 :F 1pmhX 130 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=26154 # 1rutX.6.24 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1rutX)H44 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1rutX)H44 T0547 6 :IDI 1rutX 40 :DSY T0547 11 :NENF 1rutX 45 :SRCL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26156 # 1jiwI.6.80 read from T0547.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)D7 (1jiwI)G82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1jiwI)G87 because L (left) conformation "forbidden" or filtered. T0547 6 :I 1jiwI 81 :L T0547 8 :IWGN 1jiwI 83 :RQGE T0547 13 :NF 1jiwI 88 :DY Number of specific fragments extracted= 3 number of extra gaps= 2 total=26159 # 1na6A.6.98 read from T0547.t2k.many.frag # found chain 1na6A in template set Warning: unaligning (T0547)D7 (1na6A)T100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I8 (1na6A)R101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1na6A)G105 because T (delta_L) conformation "forbidden" or filtered. T0547 6 :I 1na6A 99 :I T0547 9 :WGN 1na6A 102 :WGR T0547 13 :NF 1na6A 106 :SP Number of specific fragments extracted= 3 number of extra gaps= 2 total=26162 1vqoT expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoT:# 1vqoT.6.32 read from T0547.t2k.many.frag # adding 1vqoT to template set # found chain 1vqoT in template set Warning: unaligning (T0547)N13 (1vqoT)N39 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIWGNE 1vqoT 32 :REEYGQR T0547 14 :F 1vqoT 40 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=26164 # 1qmgA.6.18 read from T0547.t2k.many.frag # found chain 1qmgA in training set T0547 6 :IDIWGNENF 1qmgA 90 :SSVFKKEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26165 # 1xi1A.6.21 read from T0547.t2k.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)D7 (1xi1A)R23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1xi1A)W25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1xi1A)A26 because E (beta_S) conformation "forbidden" or filtered. T0547 6 :I 1xi1A 22 :C T0547 8 :I 1xi1A 24 :V T0547 11 :NENF 1xi1A 27 :YGYM Number of specific fragments extracted= 3 number of extra gaps= 2 total=26168 # 1nkiA.6.22 read from T0547.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)N13 (1nkiA)L30 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDIWGNE 1nkiA 23 :RDLLGFR T0547 14 :F 1nkiA 31 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=26170 # 1whsB.6.91 read from T0547.t2k.many.frag # found chain 1whsB in template set Warning: unaligning (T0547)E12 (1whsB)W369 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1whsB)Y370 because E (beta_S) conformation "forbidden" or filtered. T0547 6 :IDIWGN 1whsB 363 :LPTTTS T0547 14 :F 1whsB 371 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=26172 # 1o9wA.7.38 read from T0547.t2k.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)D7 (1o9wA)G39 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IWGNENFI 1o9wA 40 :YQNANVWH Number of specific fragments extracted= 1 number of extra gaps= 1 total=26173 # 1zz1A.7.93 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)E12 (1zz1A)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 7 :DIWGN 1zz1A 94 :GDTGD T0547 13 :NFI 1zz1A 100 :ITM Number of specific fragments extracted= 2 number of extra gaps= 1 total=26175 # 2cyjA.7.3 read from T0547.t2k.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)E12 (2cyjA)G9 because T (delta_L) conformation "forbidden" or filtered. T0547 7 :DIWGN 2cyjA 4 :EEVRF T0547 13 :NFI 2cyjA 10 :LVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26177 # 1dqgA.7.39 read from T0547.t2k.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)D7 (1dqgA)R40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1dqgA)S43 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IW 1dqgA 41 :WV T0547 11 :NENFI 1dqgA 44 :DSQIM Number of specific fragments extracted= 2 number of extra gaps= 2 total=26179 # 1yu0A.7.67 read from T0547.t2k.many.frag # found chain 1yu0A in training set Warning: unaligning (T0547)W9 (1yu0A)T70 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1yu0A)G71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F14 (1yu0A)A75 because Y (epsilon') conformation "forbidden" or filtered. T0547 7 :DI 1yu0A 68 :TR T0547 11 :NEN 1yu0A 72 :NAT T0547 15 :I 1yu0A 76 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=26182 # 1fcdA.7.70 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)G10 (1fcdA)H74 because N (gamma') conformation "forbidden" or filtered. T0547 7 :DIW 1fcdA 71 :QVV T0547 11 :NENFI 1fcdA 75 :DSATG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26184 # 2cs7A.7.17 read from T0547.t2k.many.frag # found chain 2cs7A in training set T0547 7 :DIWGNENFI 2cs7A 17 :IEDTGDAYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26185 # 1a62.7.47 read from T0547.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)E12 (1a62)G53 because Y (epsilon') conformation "forbidden" or filtered. T0547 7 :DIWGN 1a62 48 :DIFGD T0547 13 :NFI 1a62 54 :VLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26187 # 2bhuA.7.59 read from T0547.t2k.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)N11 (2bhuA)G64 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2bhuA)G65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2bhuA)I66 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DIWG 2bhuA 60 :TSLG T0547 14 :FI 2bhuA 67 :YE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26189 # 1t3tA.7.956 read from T0547.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)W9 (1t3tA)C951 because G (3-10) conformation "forbidden" or filtered. T0547 7 :DI 1t3tA 949 :AD T0547 10 :GNENFI 1t3tA 952 :VHYLGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=26191 # 1iomA.7.10 read from T0547.t2k.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)W9 (1iomA)T13 because Y (epsilon') conformation "forbidden" or filtered. T0547 7 :DI 1iomA 11 :LF T0547 10 :GNENFI 1iomA 14 :ESRMCY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26193 # 1vqoT.7.33 read from T0547.t2k.many.frag # found chain 1vqoT in template set Warning: unaligning (T0547)F14 (1vqoT)V40 because Y (epsilon') conformation "forbidden" or filtered. T0547 7 :DIWGNEN 1vqoT 33 :EEYGQRN T0547 15 :I 1vqoT 41 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=26195 # 1onwA.7.20 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)D7 (1onwA)E21 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1onwA)R23 because G (3-10) conformation "forbidden" or filtered. T0547 8 :I 1onwA 22 :D T0547 10 :GNENFI 1onwA 24 :GICDVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=26197 # 1o7dE.7.21 read from T0547.t2k.many.frag # found chain 1o7dE in template set Warning: unaligning (T0547)D7 (1o7dE)A906 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IWGNENFI 1o7dE 907 :RWGPETLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26198 # 1vqoZ.7.30 read from T0547.t2k.many.frag # found chain 1vqoZ in template set T0547 7 :DIWGNENFI 1vqoZ 40 :PNCGEDRVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26199 # 1wqsA.7.9 read from T0547.t2k.many.frag # found chain 1wqsA in template set Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wqsA)S14 Warning: unaligning (T0547)N11 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wqsA)S14 Warning: unaligning (T0547)E12 (1wqsA)G15 because Y (epsilon') conformation "forbidden" or filtered. T0547 7 :DIW 1wqsA 10 :VRF T0547 13 :NFI 1wqsA 16 :WGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26201 # 1jovA.7.93 read from T0547.t2k.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)G10 (1jovA)Q97 because E (beta_S) conformation "forbidden" or filtered. T0547 7 :DIW 1jovA 94 :RLW T0547 11 :NENFI 1jovA 98 :LSHYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26203 # 1wubA.7.87 read from T0547.t2k.many.frag # found chain 1wubA in training set Warning: unaligning (T0547)D7 (1wubA)E88 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1wubA)G92 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1wubA)R94 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :IWG 1wubA 89 :PLG T0547 12 :E 1wubA 93 :N T0547 14 :FI 1wubA 95 :YR Number of specific fragments extracted= 3 number of extra gaps= 3 total=26206 # 1pkhA.7.88 read from T0547.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)G10 (1pkhA)V92 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1pkhA)G94 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1pkhA)G95 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DIW 1pkhA 89 :DYV T0547 11 :N 1pkhA 93 :E T0547 14 :FI 1pkhA 96 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=26209 # 1eu1A.7.11 read from T0547.t2k.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)W9 (1eu1A)W14 because G (3-10) conformation "forbidden" or filtered. T0547 7 :DI 1eu1A 12 :CH T0547 10 :GNENFI 1eu1A 15 :GVFKAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26211 # 1vqoZ.7.38 read from T0547.t2k.many.frag # found chain 1vqoZ in template set Warning: unaligning (T0547)D7 (1vqoZ)D48 because E (beta_S) conformation "forbidden" or filtered. T0547 8 :IWGNENFI 1vqoZ 49 :RQGTGIWQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=26212 # 1kp6A.7.35 read from T0547.t2k.many.frag # found chain 1kp6A in training set Warning: unaligning (T0547)D7 (1kp6A)G36 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1kp6A)L39 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1kp6A)S40 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :IW 1kp6A 37 :DH T0547 12 :ENFI 1kp6A 41 :KSYY Number of specific fragments extracted= 2 number of extra gaps= 2 total=26214 # 3sil.7.30 read from T0547.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0547)G10 (3sil)R37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (3sil)I38 because L (left) conformation "forbidden" or filtered. T0547 7 :DIW 3sil 34 :KYF T0547 12 :ENFI 3sil 39 :PAMC Number of specific fragments extracted= 2 number of extra gaps= 1 total=26216 # 1euwA.7.101 read from T0547.t2k.many.frag # found chain 1euwA in training set T0547 7 :DIWGNENFI 1euwA 102 :WNRGQDSFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26217 # 1knmA.7.44 read from T0547.t2k.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)E12 (1knmA)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1knmA)E51 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DIWGN 1knmA 45 :AATDA T0547 14 :FI 1knmA 52 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26219 # 1rgxA.7.48 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)I8 (1rgxA)N30 because G (3-10) conformation "forbidden" or filtered. T0547 7 :D 1rgxA 29 :K T0547 9 :WGNENFI 1rgxA 31 :IGLNCWT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26221 # 1pmhX.7.122 read from T0547.t2k.many.frag # found chain 1pmhX in training set T0547 7 :DIWGNENFI 1pmhX 123 :TANAGKKVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26222 # 1qmgA.7.19 read from T0547.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)G10 (1qmgA)K94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1qmgA)K95 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DIW 1qmgA 91 :SVF T0547 12 :ENFI 1qmgA 96 :EKVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26224 # 1rutX.7.25 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)D7 (1rutX)S41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1rutX)H44 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1rutX)H44 T0547 8 :I 1rutX 42 :Y T0547 11 :NENFI 1rutX 45 :SRCLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=26226 1zx0A expands to /projects/compbio/data/pdb/1zx0.pdb.gz 1zx0A:# 1zx0A.7.17 read from T0547.t2k.many.frag # adding 1zx0A to template set # found chain 1zx0A in template set Warning: unaligning (T0547)N11 (1zx0A)A22 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1zx0A)A23 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DIWG 1zx0A 18 :PAWG T0547 13 :NFI 1zx0A 24 :PAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26228 # 1o9wA.8.39 read from T0547.t2k.many.frag # found chain 1o9wA in template set T0547 8 :IWGNENFII 1o9wA 40 :YQNANVWHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26229 # 1dqgA.8.40 read from T0547.t2k.many.frag # found chain 1dqgA in training set T0547 8 :IWGNENFII 1dqgA 41 :WVSDSQIMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26230 # 2cyjA.8.4 read from T0547.t2k.many.frag # found chain 2cyjA in training set T0547 8 :IWGNENFII 2cyjA 5 :EVRFGLVKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26231 # 1zz1A.8.94 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)W9 (1zz1A)T96 because G (3-10) conformation "forbidden" or filtered. T0547 8 :I 1zz1A 95 :D T0547 10 :GNENFII 1zz1A 97 :GDGITMM Number of specific fragments extracted= 2 number of extra gaps= 1 total=26233 # 1yu0A.8.68 read from T0547.t2k.many.frag # found chain 1yu0A in training set Warning: unaligning (T0547)G10 (1yu0A)G71 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IW 1yu0A 69 :RT T0547 11 :NENFII 1yu0A 72 :NATASI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26235 # 2cs7A.8.18 read from T0547.t2k.many.frag # found chain 2cs7A in training set Warning: unaligning (T0547)G10 (2cs7A)T20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2cs7A)A23 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IW 2cs7A 18 :ED T0547 11 :NE 2cs7A 21 :GD T0547 14 :FII 2cs7A 24 :YIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=26238 # 1vqoT.8.34 read from T0547.t2k.many.frag # found chain 1vqoT in template set T0547 8 :IWGNENFII 1vqoT 34 :EYGQRNVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26239 # 1a62.8.48 read from T0547.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)N11 (1a62)D52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1a62)G53 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IWG 1a62 49 :IFG T0547 13 :NFII 1a62 54 :VLEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26241 # 2bhuA.8.60 read from T0547.t2k.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)N11 (2bhuA)G64 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2bhuA)G65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2bhuA)I66 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :IWG 2bhuA 61 :SLG T0547 14 :FII 2bhuA 67 :YEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26243 # 1onwA.8.21 read from T0547.t2k.many.frag # found chain 1onwA in training set T0547 8 :IWGNENFII 1onwA 22 :DRGICDVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26244 # 1fcdA.8.71 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)I15 (1fcdA)G79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I16 (1fcdA)I80 because G (3-10) conformation "forbidden" or filtered. T0547 8 :IWGNENF 1fcdA 72 :VVHDSAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=26245 # 1vqoZ.8.31 read from T0547.t2k.many.frag # found chain 1vqoZ in template set Warning: unaligning (T0547)E12 (1vqoZ)D45 because N (gamma') conformation "forbidden" or filtered. T0547 8 :IWGN 1vqoZ 41 :NCGE T0547 13 :NFII 1vqoZ 46 :RVDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26247 # 1iomA.8.11 read from T0547.t2k.many.frag # found chain 1iomA in training set T0547 8 :IWGNENFII 1iomA 12 :FTESRMCYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26248 # 1euwA.8.102 read from T0547.t2k.many.frag # found chain 1euwA in training set Warning: unaligning (T0547)W9 (1euwA)R104 because G (3-10) conformation "forbidden" or filtered. T0547 8 :I 1euwA 103 :N T0547 10 :GNENFII 1euwA 105 :GQDSFTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26250 # 1eu1A.8.12 read from T0547.t2k.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)W9 (1eu1A)W14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1eu1A)F17 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :I 1eu1A 13 :H T0547 10 :GN 1eu1A 15 :GV T0547 13 :NFII 1eu1A 18 :KARV Number of specific fragments extracted= 3 number of extra gaps= 2 total=26253 # 1knmA.8.45 read from T0547.t2k.many.frag # found chain 1knmA in training set T0547 8 :IWGNENFII 1knmA 46 :ATDAGELRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26254 # 1vqoZ.8.39 read from T0547.t2k.many.frag # found chain 1vqoZ in template set Warning: unaligning (T0547)W9 (1vqoZ)Q50 because G (3-10) conformation "forbidden" or filtered. T0547 8 :I 1vqoZ 49 :R T0547 10 :GNENFII 1vqoZ 51 :GTGIWQC Number of specific fragments extracted= 2 number of extra gaps= 1 total=26256 # 1t3tA.8.957 read from T0547.t2k.many.frag # found chain 1t3tA in template set T0547 8 :IWGNENFII 1t3tA 950 :DCVHYLGQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26257 # 2a7mA.8.148 read from T0547.t2k.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)N13 (2a7mA)D154 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :IWGNE 2a7mA 149 :KIIEG T0547 14 :FII 2a7mA 155 :YEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26259 2az4A expands to /projects/compbio/data/pdb/2az4.pdb.gz 2az4A:# 2az4A.8.168 read from T0547.t2k.many.frag # adding 2az4A to template set # found chain 2az4A in template set Warning: unaligning (T0547)E12 (2az4A)S173 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IWGN 2az4A 169 :AYGA T0547 13 :NFII 2az4A 174 :ALLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26261 # 1kp6A.8.36 read from T0547.t2k.many.frag # found chain 1kp6A in training set Warning: unaligning (T0547)W9 (1kp6A)H38 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1kp6A)L39 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1kp6A)S40 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :I 1kp6A 37 :D T0547 12 :ENFII 1kp6A 41 :KSYYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26263 # 1iqzA.8.18 read from T0547.t2k.many.frag # found chain 1iqzA in training set T0547 8 :IWGNENFII 1iqzA 19 :AAAPDIYDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26264 1f00I expands to /projects/compbio/data/pdb/1f00.pdb.gz 1f00I:# 1f00I.8.139 read from T0547.t2k.many.frag # adding 1f00I to template set # found chain 1f00I in template set Warning: unaligning (T0547)G10 (1f00I)N799 because D (zeta) conformation "forbidden" or filtered. T0547 8 :IW 1f00I 797 :SA T0547 11 :NENFII 1f00I 800 :PAIASV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26266 # 1jovA.8.94 read from T0547.t2k.many.frag # found chain 1jovA in training set T0547 8 :IWGNENFII 1jovA 95 :LWQLSHYYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26267 # 1qmgA.8.20 read from T0547.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)N11 (1qmgA)K95 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :IWG 1qmgA 92 :VFK T0547 12 :ENFII 1qmgA 96 :EKVTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26269 # 1tfzA.8.140 read from T0547.t2k.many.frag # found chain 1tfzA in training set T0547 8 :IWGNENFII 1tfzA 141 :IPSSPPIVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26270 # 1u5xA.8.100 read from T0547.t2k.many.frag # found chain 1u5xA in training set Warning: unaligning (T0547)G10 (1u5xA)S204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1u5xA)G206 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IW 1u5xA 202 :CY T0547 11 :N 1u5xA 205 :A T0547 13 :NFII 1u5xA 207 :VFHL Number of specific fragments extracted= 3 number of extra gaps= 2 total=26273 # 1gu7A.8.92 read from T0547.t2k.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)E12 (1gu7A)G119 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1gu7A)D120 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :IWGN 1gu7A 115 :SLEA T0547 14 :FII 1gu7A 121 :WVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26275 # 1xrkA.8.25 read from T0547.t2k.many.frag # found chain 1xrkA in training set Warning: unaligning (T0547)N11 (1xrkA)F29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1xrkA)S30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I15 (1xrkA)F33 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IWG 1xrkA 26 :RLG T0547 13 :NF 1xrkA 31 :RV T0547 16 :I 1xrkA 34 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=26278 # 1o7dE.8.22 read from T0547.t2k.many.frag # found chain 1o7dE in template set T0547 8 :IWGNENFII 1o7dE 907 :RWGPETLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26279 # 1o9wA.9.40 read from T0547.t2k.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)K17 (1o9wA)S49 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :WGNENFII 1o9wA 41 :QNANVWHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26280 # 1dqgA.9.41 read from T0547.t2k.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)W9 (1dqgA)V42 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1dqgA)S43 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :NENFIIK 1dqgA 44 :DSQIMSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=26281 # 2cyjA.9.5 read from T0547.t2k.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)N11 (2cyjA)F8 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2cyjA)D14 because L (left) conformation "forbidden" or filtered. T0547 9 :WG 2cyjA 6 :VR T0547 12 :ENFII 2cyjA 9 :GLVKI Number of specific fragments extracted= 2 number of extra gaps= 2 total=26283 # 1zz1A.9.95 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)E12 (1zz1A)G99 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1zz1A)I100 because G (3-10) conformation "forbidden" or filtered. T0547 9 :WGN 1zz1A 96 :TGD T0547 14 :FIIK 1zz1A 101 :TMMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26285 # 1yu0A.9.69 read from T0547.t2k.many.frag # found chain 1yu0A in training set Warning: unaligning (T0547)W9 (1yu0A)T70 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F14 (1yu0A)A75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1yu0A)K78 because P (beta_P) conformation "forbidden" or filtered. T0547 10 :GNEN 1yu0A 71 :GNAT T0547 15 :II 1yu0A 76 :SI Number of specific fragments extracted= 2 number of extra gaps= 3 total=26287 # 1onwA.9.22 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)G10 (1onwA)G24 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1onwA)I25 because P (beta_P) conformation "forbidden" or filtered. T0547 9 :W 1onwA 23 :R T0547 12 :ENFIIK 1onwA 26 :CDVLVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26289 # 2cs7A.9.19 read from T0547.t2k.many.frag # found chain 2cs7A in training set Warning: unaligning (T0547)G10 (2cs7A)T20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2cs7A)A23 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :W 2cs7A 19 :D T0547 11 :NE 2cs7A 21 :GD T0547 14 :FIIK 2cs7A 24 :YIVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=26292 # 1knmA.9.46 read from T0547.t2k.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)E12 (1knmA)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1knmA)Y55 because L (left) conformation "forbidden" or filtered. T0547 9 :WGN 1knmA 47 :TDA T0547 13 :NFII 1knmA 51 :ELRV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26294 # 1vqoT.9.35 read from T0547.t2k.many.frag # found chain 1vqoT in template set Warning: unaligning (T0547)N13 (1vqoT)N39 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :WGNE 1vqoT 35 :YGQR T0547 14 :FIIK 1vqoT 40 :VRVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26296 # 1euwA.9.103 read from T0547.t2k.many.frag # found chain 1euwA in training set Warning: unaligning (T0547)E12 (1euwA)D107 because E (beta_S) conformation "forbidden" or filtered. T0547 9 :WGN 1euwA 104 :RGQ T0547 13 :NFIIK 1euwA 108 :SFTIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=26298 # 1iqzA.9.19 read from T0547.t2k.many.frag # found chain 1iqzA in training set Warning: unaligning (T0547)G10 (1iqzA)A21 because D (zeta) conformation "forbidden" or filtered. T0547 9 :W 1iqzA 20 :A T0547 11 :NENFIIK 1iqzA 22 :PDIYDYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26300 # 1a62.9.49 read from T0547.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)N11 (1a62)D52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1a62)G53 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1a62)L58 because P (beta_P) conformation "forbidden" or filtered. T0547 9 :WG 1a62 50 :FG T0547 13 :NFII 1a62 54 :VLEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=26302 # 1f00I.9.140 read from T0547.t2k.many.frag # found chain 1f00I in template set T0547 9 :WGNENFIIK 1f00I 798 :ANPAIASVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26303 # 1vqoZ.9.32 read from T0547.t2k.many.frag # found chain 1vqoZ in template set Warning: unaligning (T0547)G10 (1vqoZ)G43 because G (3-10) conformation "forbidden" or filtered. T0547 9 :W 1vqoZ 42 :C T0547 11 :NENFIIK 1vqoZ 44 :EDRVDRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=26305 # 1d0qA.9.44 read from T0547.t2k.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)E12 (1d0qA)P48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1d0qA)S49 because G (3-10) conformation "forbidden" or filtered. T0547 9 :WGN 1d0qA 45 :EKT T0547 14 :FIIK 1d0qA 50 :FSVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26307 # 2a7mA.9.149 read from T0547.t2k.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)E12 (2a7mA)G153 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2a7mA)V158 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :WGN 2a7mA 150 :IIE T0547 13 :NFII 2a7mA 154 :DYEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26309 # 2bhuA.9.61 read from T0547.t2k.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)N11 (2bhuA)G64 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2bhuA)G65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2bhuA)I66 because P (beta_P) conformation "forbidden" or filtered. T0547 9 :WG 2bhuA 62 :LG T0547 14 :FIIK 2bhuA 67 :YELE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26311 # 1iomA.9.12 read from T0547.t2k.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)W9 (1iomA)T13 because Y (epsilon') conformation "forbidden" or filtered. T0547 10 :GNENFIIK 1iomA 14 :ESRMCYID Number of specific fragments extracted= 1 number of extra gaps= 1 total=26312 # 1vqoZ.9.40 read from T0547.t2k.many.frag # found chain 1vqoZ in template set T0547 9 :WGNENFIIK 1vqoZ 50 :QGTGIWQCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26313 # 1gu7A.9.93 read from T0547.t2k.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)E12 (1gu7A)G119 because T (delta_L) conformation "forbidden" or filtered. T0547 9 :WGN 1gu7A 116 :LEA T0547 13 :NFIIK 1gu7A 120 :DWVIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26315 # 1eu1A.9.13 read from T0547.t2k.many.frag # found chain 1eu1A in training set T0547 9 :WGNENFIIK 1eu1A 14 :WGVFKARVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26316 # 1fcdA.9.72 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)G10 (1fcdA)H74 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1fcdA)D75 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :W 1fcdA 73 :V T0547 12 :ENFIIK 1fcdA 76 :SATGID Number of specific fragments extracted= 2 number of extra gaps= 1 total=26318 # 1u5xA.9.101 read from T0547.t2k.many.frag # found chain 1u5xA in training set Warning: unaligning (T0547)N11 (1u5xA)A205 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :WG 1u5xA 203 :YS T0547 12 :ENFIIK 1u5xA 206 :GVFHLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26320 # 1tfzA.9.141 read from T0547.t2k.many.frag # found chain 1tfzA in training set Warning: unaligning (T0547)K17 (1tfzA)N150 because L (left) conformation "forbidden" or filtered. T0547 9 :WGNENFII 1tfzA 142 :PSSPPIVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26321 1v8qA expands to /projects/compbio/data/pdb/1v8q.pdb.gz 1v8qA:# 1v8qA.9.53 read from T0547.t2k.many.frag # adding 1v8qA to template set # found chain 1v8qA in template set T0547 9 :WGNENFIIK 1v8qA 54 :GRDFTLFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26322 # 1wlgA.9.215 read from T0547.t2k.many.frag # found chain 1wlgA in training set Warning: unaligning (T0547)G10 (1wlgA)D287 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1wlgA)S290 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1wlgA)N294 because P (beta_P) conformation "forbidden" or filtered. T0547 9 :W 1wlgA 286 :G T0547 11 :NE 1wlgA 288 :LV T0547 14 :FII 1wlgA 291 :YQI Number of specific fragments extracted= 3 number of extra gaps= 3 total=26325 # 1jiwI.9.83 read from T0547.t2k.many.frag # found chain 1jiwI in training set T0547 9 :WGNENFIIK 1jiwI 84 :QGEGDYRVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26326 1u8bA expands to /projects/compbio/data/pdb/1u8b.pdb.gz 1u8bA:# 1u8bA.9.16 read from T0547.t2k.many.frag # adding 1u8bA to template set # found chain 1u8bA in template set Warning: unaligning (T0547)G10 (1u8bA)D24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1u8bA)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1u8bA)F27 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :W 1u8bA 23 :A T0547 12 :E 1u8bA 26 :E T0547 14 :FIIK 1u8bA 28 :VFAV Number of specific fragments extracted= 3 number of extra gaps= 2 total=26329 # 2az4A.9.169 read from T0547.t2k.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)E12 (2az4A)S173 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE in next template residue (2az4A)T179 T0547 9 :WGN 2az4A 170 :YGA T0547 13 :NFII 2az4A 174 :ALLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=26331 # 1fp2A.9.78 read from T0547.t2k.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)E12 (1fp2A)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 9 :WGN 1fp2A 79 :AHN T0547 13 :NFIIK 1fp2A 83 :FFEII Number of specific fragments extracted= 2 number of extra gaps= 1 total=26333 # 1o9wA.10.41 read from T0547.t2k.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)K17 (1o9wA)S49 because Y (epsilon') conformation "forbidden" or filtered. T0547 10 :GNENFII 1o9wA 42 :NANVWHI T0547 18 :N 1o9wA 50 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=26335 # 1dqgA.10.42 read from T0547.t2k.many.frag # found chain 1dqgA in training set T0547 10 :GNENFIIKN 1dqgA 43 :SDSQIMSVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26336 # 1zz1A.10.96 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)E12 (1zz1A)G99 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1zz1A)G104 because P (beta_P) conformation "forbidden" or filtered. T0547 10 :GN 1zz1A 97 :GD T0547 13 :NFII 1zz1A 100 :ITMM T0547 18 :N 1zz1A 105 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=26339 # 1yu0A.10.70 read from T0547.t2k.many.frag # found chain 1yu0A in training set T0547 10 :GNENFIIKN 1yu0A 71 :GNATASIKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26340 # 2cyjA.10.6 read from T0547.t2k.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)E12 (2cyjA)G9 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2cyjA)D14 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (2cyjA)G15 because T (delta_L) conformation "forbidden" or filtered. T0547 10 :GN 2cyjA 7 :RF T0547 13 :NFII 2cyjA 10 :LVKI Number of specific fragments extracted= 2 number of extra gaps= 2 total=26342 # 1knmA.10.47 read from T0547.t2k.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)N18 (1knmA)G56 because T (delta_L) conformation "forbidden" or filtered. T0547 10 :GNENFIIK 1knmA 48 :DAGELRVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=26343 # 1onwA.10.23 read from T0547.t2k.many.frag # found chain 1onwA in training set T0547 10 :GNENFIIKN 1onwA 24 :GICDVLVAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26344 # 2a7mA.10.150 read from T0547.t2k.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)E12 (2a7mA)G153 because S (epsilon) conformation "forbidden" or filtered. T0547 10 :GN 2a7mA 151 :IE T0547 13 :NFIIKN 2a7mA 154 :DYEVVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26346 # 1iqzA.10.20 read from T0547.t2k.many.frag # found chain 1iqzA in training set Warning: unaligning (T0547)K17 (1iqzA)D28 because P (beta_P) conformation "forbidden" or filtered. T0547 10 :GNENFII 1iqzA 21 :APDIYDY T0547 18 :N 1iqzA 29 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=26348 # 1euwA.10.104 read from T0547.t2k.many.frag # found chain 1euwA in training set T0547 10 :GNENFIIKN 1euwA 105 :GQDSFTIQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26349 # 1vqoT.10.36 read from T0547.t2k.many.frag # found chain 1vqoT in template set T0547 10 :GNENFIIKN 1vqoT 36 :GQRNVRVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26350 # 1a62.10.50 read from T0547.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)N11 (1a62)D52 because Y (epsilon') conformation "forbidden" or filtered. T0547 10 :G 1a62 51 :G T0547 12 :ENFIIKN 1a62 53 :GVLEILQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=26352 # 1u5xA.10.102 read from T0547.t2k.many.frag # found chain 1u5xA in training set Warning: unaligning (T0547)G10 (1u5xA)S204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1u5xA)A205 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1u5xA)G206 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :NFIIKN 1u5xA 207 :VFHLHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=26353 # 2cs7A.10.20 read from T0547.t2k.many.frag # found chain 2cs7A in training set Warning: unaligning (T0547)K17 (2cs7A)P27 because P (beta_P) conformation "forbidden" or filtered. T0547 10 :GNENFII 2cs7A 20 :TGDAYIV T0547 18 :N 2cs7A 28 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=26355 # 1d0qA.10.45 read from T0547.t2k.many.frag # found chain 1d0qA in training set T0547 10 :GNENFIIKN 1d0qA 46 :KTPSFSVSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26356 # 1vqoZ.10.33 read from T0547.t2k.many.frag # found chain 1vqoZ in template set Warning: unaligning (T0547)N18 (1vqoZ)G51 because Y (epsilon') conformation "forbidden" or filtered. T0547 10 :GNENFIIK 1vqoZ 43 :GEDRVDRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=26357 # 1f00I.10.141 read from T0547.t2k.many.frag # found chain 1f00I in template set T0547 10 :GNENFIIKN 1f00I 799 :NPAIASVDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26358 # 1fcdA.10.73 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)G10 (1fcdA)H74 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1fcdA)D75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1fcdA)S76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I15 (1fcdA)G79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1fcdA)D81 because P (beta_P) conformation "forbidden" or filtered. T0547 13 :NF 1fcdA 77 :AT T0547 16 :I 1fcdA 80 :I T0547 18 :N 1fcdA 82 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=26361 # 1eu1A.10.14 read from T0547.t2k.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)G10 (1eu1A)G15 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1eu1A)F17 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :N 1eu1A 16 :V T0547 13 :NFIIKN 1eu1A 18 :KARVEN Number of specific fragments extracted= 2 number of extra gaps= 2 total=26363 # 1t3tA.10.959 read from T0547.t2k.many.frag # found chain 1t3tA in template set T0547 10 :GNENFIIKN 1t3tA 952 :VHYLGQALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26364 # 1tfzA.10.142 read from T0547.t2k.many.frag # found chain 1tfzA in training set Warning: unaligning (T0547)E12 (1tfzA)P145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1tfzA)N150 because L (left) conformation "forbidden" or filtered. T0547 10 :GN 1tfzA 143 :SS T0547 13 :NFII 1tfzA 146 :PIVL T0547 18 :N 1tfzA 151 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=26367 # 1wlgA.10.216 read from T0547.t2k.many.frag # found chain 1wlgA in training set Warning: unaligning (T0547)N13 (1wlgA)S290 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1wlgA)N294 because P (beta_P) conformation "forbidden" or filtered. T0547 10 :GNE 1wlgA 287 :DLV T0547 14 :FII 1wlgA 291 :YQI T0547 18 :N 1wlgA 295 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=26370 # 1p1mA.10.16 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)N11 (1p1mA)W18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1p1mA)G19 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1p1mA)A20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1p1mA)E24 because E (beta_S) conformation "forbidden" or filtered. T0547 10 :G 1p1mA 17 :F T0547 14 :FII 1p1mA 21 :VEI T0547 18 :N 1p1mA 25 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=26373 # 1iomA.10.13 read from T0547.t2k.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)G10 (1iomA)E14 because E (beta_S) conformation "forbidden" or filtered. T0547 11 :NENFIIKN 1iomA 15 :SRMCYIDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=26374 # 1rgxA.10.80 read from T0547.t2k.many.frag # found chain 1rgxA in training set T0547 10 :GNENFIIKN 1rgxA 61 :ACGSWDIRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26375 # 1dg6A.10.153 read from T0547.t2k.many.frag # found chain 1dg6A in training set Warning: unaligning (T0547)N11 (1dg6A)G245 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1dg6A)G246 because Y (epsilon') conformation "forbidden" or filtered. T0547 10 :G 1dg6A 244 :Q T0547 13 :NFIIKN 1dg6A 247 :IFELKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26377 1e0tA expands to /projects/compbio/data/pdb/1e0t.pdb.gz 1e0tA:# 1e0tA.10.78 read from T0547.t2k.many.frag # adding 1e0tA to template set # found chain 1e0tA in template set Warning: unaligning (T0547)N11 (1e0tA)G80 because T (delta_L) conformation "forbidden" or filtered. T0547 10 :G 1e0tA 79 :G T0547 12 :ENFIIKN 1e0tA 81 :NDVSLKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26379 # 1vqoZ.10.41 read from T0547.t2k.many.frag # found chain 1vqoZ in template set T0547 10 :GNENFIIKN 1vqoZ 51 :GTGIWQCSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26380 # 1hxrA.10.8 read from T0547.t2k.many.frag # found chain 1hxrA in training set Warning: unaligning (T0547)G10 (1hxrA)N17 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1hxrA)A20 because P (beta_P) conformation "forbidden" or filtered. T0547 11 :NE 1hxrA 18 :RK T0547 14 :FIIKN 1hxrA 21 :VLCQR Number of specific fragments extracted= 2 number of extra gaps= 2 total=26382 # 1knmA.10.79 read from T0547.t2k.many.frag # found chain 1knmA in training set T0547 10 :GNENFIIKN 1knmA 80 :DNQKWRLNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26383 # 1o9wA.11.42 read from T0547.t2k.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)N18 (1o9wA)K50 because L (left) conformation "forbidden" or filtered. T0547 11 :NENFIIK 1o9wA 43 :ANVWHIS T0547 19 :G 1o9wA 51 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=26385 # 1yu0A.11.71 read from T0547.t2k.many.frag # found chain 1yu0A in training set T0547 11 :NENFIIKNG 1yu0A 72 :NATASIKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26386 # 1onwA.11.24 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)N11 (1onwA)I25 because P (beta_P) conformation "forbidden" or filtered. T0547 12 :ENFIIKNG 1onwA 26 :CDVLVANG Number of specific fragments extracted= 1 number of extra gaps= 1 total=26387 # 1dqgA.11.43 read from T0547.t2k.many.frag # found chain 1dqgA in training set T0547 11 :NENFIIKNG 1dqgA 44 :DSQIMSVAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26388 # 1knmA.11.48 read from T0547.t2k.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)E12 (1knmA)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1knmA)E51 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1knmA)Y55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1knmA)D57 because G (3-10) conformation "forbidden" or filtered. T0547 11 :N 1knmA 49 :A T0547 14 :FII 1knmA 52 :LRV T0547 18 :N 1knmA 56 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=26391 # 1a62.11.51 read from T0547.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)E12 (1a62)G53 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1a62)V54 because P (beta_P) conformation "forbidden" or filtered. T0547 11 :N 1a62 52 :D T0547 14 :FIIKNG 1a62 55 :LEILQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26393 # 1u5xA.11.103 read from T0547.t2k.many.frag # found chain 1u5xA in training set Warning: unaligning (T0547)N11 (1u5xA)A205 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1u5xA)G206 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1u5xA)V207 because E (beta_S) conformation "forbidden" or filtered. T0547 14 :FIIKNG 1u5xA 208 :FHLHQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=26394 # 1zz1A.11.97 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)E12 (1zz1A)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 11 :N 1zz1A 98 :D T0547 13 :NFIIKNG 1zz1A 100 :ITMMGNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26396 # 1vqoT.11.37 read from T0547.t2k.many.frag # found chain 1vqoT in template set Warning: unaligning (T0547)N13 (1vqoT)N39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1vqoT)A44 because G (3-10) conformation "forbidden" or filtered. T0547 11 :NE 1vqoT 37 :QR T0547 14 :FIIK 1vqoT 40 :VRVN T0547 19 :G 1vqoT 45 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=26399 # 1euwA.11.105 read from T0547.t2k.many.frag # found chain 1euwA in training set T0547 11 :NENFIIKNG 1euwA 106 :QDSFTIQPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26400 # 1p1mA.11.17 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)E12 (1p1mA)G19 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1p1mA)N25 because L (left) conformation "forbidden" or filtered. T0547 11 :N 1p1mA 18 :W T0547 13 :NFIIK 1p1mA 20 :AVEIE T0547 19 :G 1p1mA 26 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=26403 # 1iqzA.11.21 read from T0547.t2k.many.frag # found chain 1iqzA in training set Warning: unaligning (T0547)K17 (1iqzA)D28 because P (beta_P) conformation "forbidden" or filtered. T0547 11 :NENFII 1iqzA 22 :PDIYDY T0547 18 :NG 1iqzA 29 :ED Number of specific fragments extracted= 2 number of extra gaps= 1 total=26405 # 1t3tA.11.960 read from T0547.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)G19 (1t3tA)G961 because S (epsilon) conformation "forbidden" or filtered. T0547 11 :NENFIIKN 1t3tA 953 :HYLGQALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=26406 # 2cyjA.11.7 read from T0547.t2k.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)K17 (2cyjA)D14 because L (left) conformation "forbidden" or filtered. T0547 11 :NENFII 2cyjA 8 :FGLVKI T0547 18 :NG 2cyjA 15 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26408 # 2a7mA.11.151 read from T0547.t2k.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)E12 (2a7mA)G153 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2a7mA)D154 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2a7mA)V158 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :N 2a7mA 152 :E T0547 14 :FII 2a7mA 155 :YEV T0547 18 :NG 2a7mA 159 :PG Number of specific fragments extracted= 3 number of extra gaps= 2 total=26411 # 1wlgA.11.217 read from T0547.t2k.many.frag # found chain 1wlgA in training set Warning: unaligning (T0547)N13 (1wlgA)S290 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :NE 1wlgA 288 :LV T0547 14 :FIIKNG 1wlgA 291 :YQINND Number of specific fragments extracted= 2 number of extra gaps= 1 total=26413 # 2cs7A.11.21 read from T0547.t2k.many.frag # found chain 2cs7A in training set Warning: unaligning (T0547)N11 (2cs7A)G21 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2cs7A)A23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (2cs7A)G29 because S (epsilon) conformation "forbidden" or filtered. T0547 12 :E 2cs7A 22 :D T0547 14 :FIIKN 2cs7A 24 :YIVPH Number of specific fragments extracted= 2 number of extra gaps= 3 total=26415 # 1eu1A.11.15 read from T0547.t2k.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)N11 (1eu1A)V16 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1eu1A)N23 because L (left) conformation "forbidden" or filtered. T0547 12 :ENFIIK 1eu1A 17 :FKARVE T0547 19 :G 1eu1A 24 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=26417 # 1d0qA.11.46 read from T0547.t2k.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)N13 (1d0qA)S49 because G (3-10) conformation "forbidden" or filtered. T0547 11 :NE 1d0qA 47 :TP T0547 14 :FIIKNG 1d0qA 50 :FSVSPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26419 # 1dg6A.11.154 read from T0547.t2k.many.frag # found chain 1dg6A in training set Warning: unaligning (T0547)N11 (1dg6A)G245 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1dg6A)G246 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :NFIIKNG 1dg6A 247 :IFELKEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=26420 # 1vqoZ.11.34 read from T0547.t2k.many.frag # found chain 1vqoZ in template set T0547 11 :NENFIIKNG 1vqoZ 44 :EDRVDRQGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26421 # 1tfzA.11.143 read from T0547.t2k.many.frag # found chain 1tfzA in training set Warning: unaligning (T0547)N13 (1tfzA)P146 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1tfzA)N150 because L (left) conformation "forbidden" or filtered. T0547 11 :NE 1tfzA 144 :SP T0547 14 :FII 1tfzA 147 :IVL T0547 18 :NG 1tfzA 151 :EA Number of specific fragments extracted= 3 number of extra gaps= 2 total=26424 # 1rgxA.11.81 read from T0547.t2k.many.frag # found chain 1rgxA in training set T0547 11 :NENFIIKNG 1rgxA 62 :CGSWDIREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26425 # 1fcdA.11.74 read from T0547.t2k.many.frag # found chain 1fcdA in template set T0547 11 :NENFIIKNG 1fcdA 75 :DSATGIDPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26426 # 1gcqC.11.23 read from T0547.t2k.many.frag # found chain 1gcqC in training set Warning: unaligning (T0547)N13 (1gcqC)F616 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1gcqC)P621 because P (beta_P) conformation "forbidden" or filtered. T0547 11 :NE 1gcqC 614 :GP T0547 14 :FIIK 1gcqC 617 :LRLN T0547 19 :G 1gcqC 622 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=26429 2bhoA expands to /projects/compbio/data/pdb/2bho.pdb.gz 2bhoA:# 2bhoA.11.70 read from T0547.t2k.many.frag # adding 2bhoA to template set # found chain 2bhoA in template set Warning: unaligning (T0547)N11 (2bhoA)A69 because P (beta_P) conformation "forbidden" or filtered. T0547 12 :ENFIIKNG 2bhoA 70 :HVQGRLDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=26430 1o12A expands to /projects/compbio/data/pdb/1o12.pdb.gz 1o12A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1o12A.11.28 read from T0547.t2k.many.frag # adding 1o12A to template set # found chain 1o12A in template set Warning: unaligning (T0547)E12 (1o12A)G18 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1o12A)E24 because L (left) conformation "forbidden" or filtered. T0547 11 :N 1o12A 17 :T T0547 13 :NFIIK 1o12A 19 :DVEIE T0547 19 :G 1o12A 25 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=26433 # 1e0tA.11.79 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)E12 (1e0tA)N81 because P (beta_P) conformation "forbidden" or filtered. T0547 11 :N 1e0tA 80 :G T0547 13 :NFIIKNG 1e0tA 82 :DVSLKAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26435 # 1knmA.11.80 read from T0547.t2k.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)G19 (1knmA)D89 because G (3-10) conformation "forbidden" or filtered. T0547 11 :NENFIIKN 1knmA 81 :NQKWRLNS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26436 # 1f00I.11.142 read from T0547.t2k.many.frag # found chain 1f00I in template set T0547 11 :NENFIIKNG 1f00I 800 :PAIASVDAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26437 # 1o9wA.12.43 read from T0547.t2k.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)E12 (1o9wA)N44 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1o9wA)S49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1o9wA)K50 because L (left) conformation "forbidden" or filtered. T0547 13 :NFII 1o9wA 45 :VWHI T0547 19 :GK 1o9wA 51 :GF Number of specific fragments extracted= 2 number of extra gaps= 2 total=26439 # 1onwA.12.25 read from T0547.t2k.many.frag # found chain 1onwA in training set T0547 12 :ENFIIKNGK 1onwA 26 :CDVLVANGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26440 # 1dqgA.12.44 read from T0547.t2k.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G19 (1dqgA)F52 because G (3-10) conformation "forbidden" or filtered. T0547 12 :ENFIIKN 1dqgA 45 :SQIMSVA T0547 20 :K 1dqgA 53 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=26442 # 1yu0A.12.72 read from T0547.t2k.many.frag # found chain 1yu0A in training set Warning: unaligning (T0547)N13 (1yu0A)T74 because E (beta_S) conformation "forbidden" or filtered. T0547 12 :E 1yu0A 73 :A T0547 14 :FIIKNGK 1yu0A 75 :ASIKAGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26444 # 1p1mA.12.18 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)E12 (1p1mA)G19 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1p1mA)A20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1p1mA)N25 because L (left) conformation "forbidden" or filtered. T0547 14 :FIIK 1p1mA 21 :VEIE T0547 19 :GK 1p1mA 26 :GT Number of specific fragments extracted= 2 number of extra gaps= 2 total=26446 # 1knmA.12.49 read from T0547.t2k.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)K17 (1knmA)Y55 because L (left) conformation "forbidden" or filtered. T0547 12 :ENFII 1knmA 50 :GELRV T0547 18 :NGK 1knmA 56 :GDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26448 # 1iqzA.12.22 read from T0547.t2k.many.frag # found chain 1iqzA in training set Warning: unaligning (T0547)K20 (1iqzA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 12 :ENFIIKNG 1iqzA 23 :DIYDYDED Number of specific fragments extracted= 1 number of extra gaps= 1 total=26449 # 1a62.12.52 read from T0547.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)E12 (1a62)G53 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :NFIIKNGK 1a62 54 :VLEILQDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=26450 # 1zz1A.12.98 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)E12 (1zz1A)G99 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1zz1A)G104 because P (beta_P) conformation "forbidden" or filtered. T0547 13 :NFII 1zz1A 100 :ITMM T0547 18 :NGK 1zz1A 105 :NGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=26452 # 1u5xA.12.104 read from T0547.t2k.many.frag # found chain 1u5xA in training set Warning: unaligning (T0547)E12 (1u5xA)G206 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :NFIIKNGK 1u5xA 207 :VFHLHQGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26453 # 1d0qA.12.47 read from T0547.t2k.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)E12 (1d0qA)P48 because P (beta_P) conformation "forbidden" or filtered. T0547 13 :NFIIKNGK 1d0qA 49 :SFSVSPEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26454 # 1vqoZ.12.35 read from T0547.t2k.many.frag # found chain 1vqoZ in template set Warning: unaligning (T0547)N13 (1vqoZ)R46 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1vqoZ)G51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1vqoZ)G53 because T (delta_L) conformation "forbidden" or filtered. T0547 12 :E 1vqoZ 45 :D T0547 14 :FIIK 1vqoZ 47 :VDRQ T0547 19 :G 1vqoZ 52 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=26457 # 1dg6A.12.155 read from T0547.t2k.many.frag # found chain 1dg6A in training set T0547 12 :ENFIIKNGK 1dg6A 246 :GIFELKEND Number of specific fragments extracted= 1 number of extra gaps= 0 total=26458 # 1euwA.12.106 read from T0547.t2k.many.frag # found chain 1euwA in training set Warning: unaligning (T0547)E12 (1euwA)D107 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1euwA)S108 because P (beta_P) conformation "forbidden" or filtered. T0547 14 :FIIKNGK 1euwA 109 :FTIQPGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26459 # 2bhoA.12.71 read from T0547.t2k.many.frag # found chain 2bhoA in template set Warning: unaligning (T0547)K20 (2bhoA)K78 because P (beta_P) conformation "forbidden" or filtered. T0547 12 :ENFIIKNG 2bhoA 70 :HVQGRLDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=26460 # 1eu1A.12.16 read from T0547.t2k.many.frag # found chain 1eu1A in training set T0547 12 :ENFIIKNGK 1eu1A 17 :FKARVENGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26461 # 1vqoT.12.38 read from T0547.t2k.many.frag # found chain 1vqoT in template set Warning: unaligning (T0547)N13 (1vqoT)N39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1vqoT)A44 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1vqoT)G45 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1vqoT)D46 because P (beta_P) conformation "forbidden" or filtered. T0547 12 :E 1vqoT 38 :R T0547 14 :FIIK 1vqoT 40 :VRVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=26463 1zy9A expands to /projects/compbio/data/pdb/1zy9.pdb.gz 1zy9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 855, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 857, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 859, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 861, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 863, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 865, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 867, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 1178, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 1182, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 1184, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 1186, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 1188, because occupancy 0.500 <= existing 0.500 in 1zy9A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3225, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 3229, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 3231, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 3233, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 3235, because occupancy 0.500 <= existing 0.500 in 1zy9A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 4018, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4022, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4024, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4026, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4028, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4116, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4120, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4122, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4124, because occupancy 0.500 <= existing 0.500 in 1zy9A # 1zy9A.12.134 read from T0547.t2k.many.frag # adding 1zy9A to template set # found chain 1zy9A in template set Warning: unaligning (T0547)N13 (1zy9A)F124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1zy9A)E128 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1zy9A)D129 because L (left) conformation "forbidden" or filtered. T0547 12 :E 1zy9A 123 :P T0547 14 :FII 1zy9A 125 :FAV T0547 19 :GK 1zy9A 130 :GE Number of specific fragments extracted= 3 number of extra gaps= 2 total=26466 # 1wlgA.12.218 read from T0547.t2k.many.frag # found chain 1wlgA in training set Warning: unaligning (T0547)K20 (1wlgA)G297 because T (delta_L) conformation "forbidden" or filtered. T0547 12 :ENFIIKNG 1wlgA 289 :VSYQINND Number of specific fragments extracted= 1 number of extra gaps= 1 total=26467 # 2cyjA.12.8 read from T0547.t2k.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)K17 (2cyjA)D14 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (2cyjA)E17 because P (beta_P) conformation "forbidden" or filtered. T0547 12 :ENFII 2cyjA 9 :GLVKI T0547 18 :NG 2cyjA 15 :GK Number of specific fragments extracted= 2 number of extra gaps= 2 total=26469 # 2a7mA.12.152 read from T0547.t2k.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)K17 (2a7mA)V158 because Y (epsilon') conformation "forbidden" or filtered. T0547 12 :ENFII 2a7mA 153 :GDYEV T0547 18 :NGK 2a7mA 159 :PGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26471 # 1t3tA.12.961 read from T0547.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)F14 (1t3tA)G956 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1t3tA)A960 because P (beta_P) conformation "forbidden" or filtered. T0547 12 :EN 1t3tA 954 :YL T0547 15 :IIK 1t3tA 957 :QAL T0547 19 :GK 1t3tA 961 :GD Number of specific fragments extracted= 3 number of extra gaps= 2 total=26474 # 1o12A.12.29 read from T0547.t2k.many.frag # found chain 1o12A in template set Warning: unaligning (T0547)E12 (1o12A)G18 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1o12A)E24 because L (left) conformation "forbidden" or filtered. T0547 13 :NFIIK 1o12A 19 :DVEIE T0547 19 :GK 1o12A 25 :GK Number of specific fragments extracted= 2 number of extra gaps= 2 total=26476 # 1tfzA.12.144 read from T0547.t2k.many.frag # found chain 1tfzA in training set Warning: unaligning (T0547)N13 (1tfzA)P146 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1tfzA)N150 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1tfzA)E151 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1tfzA)A152 because G (3-10) conformation "forbidden" or filtered. T0547 12 :E 1tfzA 145 :P T0547 14 :FII 1tfzA 147 :IVL T0547 20 :K 1tfzA 153 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=26479 # 1rgxA.12.82 read from T0547.t2k.many.frag # found chain 1rgxA in training set T0547 12 :ENFIIKNGK 1rgxA 63 :GSWDIREEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26480 # 1pg6A.12.25 read from T0547.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)N13 (1pg6A)E20 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1pg6A)H25 because P (beta_P) conformation "forbidden" or filtered. T0547 12 :E 1pg6A 19 :V T0547 14 :FIIK 1pg6A 21 :IDLE T0547 19 :GK 1pg6A 26 :GG Number of specific fragments extracted= 3 number of extra gaps= 2 total=26483 1lktA expands to /projects/compbio/data/pdb/1lkt.pdb.gz 1lktA:# 1lktA.12.57 read from T0547.t2k.many.frag # adding 1lktA to template set # found chain 1lktA in template set Warning: unaligning (T0547)N13 (1lktA)P64 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1lktA)N68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1lktA)G71 because T (delta_L) conformation "forbidden" or filtered. T0547 12 :E 1lktA 63 :Q T0547 14 :FII 1lktA 65 :LII T0547 18 :NG 1lktA 69 :AA Number of specific fragments extracted= 3 number of extra gaps= 3 total=26486 # 2cs7A.12.22 read from T0547.t2k.many.frag # found chain 2cs7A in training set T0547 12 :ENFIIKNGK 2cs7A 22 :DAYIVPHGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26487 # 1qwyA.12.23 read from T0547.t2k.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)N13 (1qwyA)Y50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1qwyA)N56 because G (3-10) conformation "forbidden" or filtered. T0547 12 :E 1qwyA 49 :T T0547 14 :FIIKN 1qwyA 51 :YTIDS T0547 20 :K 1qwyA 57 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=26490 # 1knmA.12.81 read from T0547.t2k.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)K17 (1knmA)N87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1knmA)D89 because G (3-10) conformation "forbidden" or filtered. T0547 12 :ENFII 1knmA 82 :QKWRL T0547 18 :N 1knmA 88 :S T0547 20 :K 1knmA 90 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=26493 # 1onwA.13.26 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)N18 (1onwA)N32 because L (left) conformation "forbidden" or filtered. T0547 13 :NFIIK 1onwA 27 :DVLVA T0547 19 :GKV 1onwA 33 :GKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26495 # 1o9wA.13.44 read from T0547.t2k.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)N18 (1o9wA)K50 because L (left) conformation "forbidden" or filtered. T0547 13 :NFIIK 1o9wA 45 :VWHIS T0547 19 :GKV 1o9wA 51 :GFC Number of specific fragments extracted= 2 number of extra gaps= 1 total=26497 # 1p1mA.13.19 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)N13 (1p1mA)A20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1p1mA)N25 because L (left) conformation "forbidden" or filtered. T0547 14 :FIIK 1p1mA 21 :VEIE T0547 19 :GKV 1p1mA 26 :GTI Number of specific fragments extracted= 2 number of extra gaps= 2 total=26499 # 1iqzA.13.23 read from T0547.t2k.many.frag # found chain 1iqzA in training set Warning: unaligning (T0547)G19 (1iqzA)D30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1iqzA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 13 :NFIIKN 1iqzA 24 :IYDYDE T0547 21 :V 1iqzA 32 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=26501 # 1dqgA.13.45 read from T0547.t2k.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)K20 (1dqgA)K53 because L (left) conformation "forbidden" or filtered. T0547 13 :NFIIKNG 1dqgA 46 :QIMSVAF T0547 21 :V 1dqgA 54 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=26503 # 1fcdA.13.76 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)N13 (1fcdA)A77 because P (beta_P) conformation "forbidden" or filtered. T0547 14 :FIIKNGKV 1fcdA 78 :TGIDPDKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26504 # 1zy9A.13.135 read from T0547.t2k.many.frag # found chain 1zy9A in template set Warning: unaligning (T0547)N18 (1zy9A)D129 because L (left) conformation "forbidden" or filtered. T0547 13 :NFIIK 1zy9A 124 :FFAVE T0547 19 :GKV 1zy9A 130 :GEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26506 # 1d0qA.13.48 read from T0547.t2k.many.frag # found chain 1d0qA in training set T0547 13 :NFIIKNGKV 1d0qA 49 :SFSVSPEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26507 # 1dg6A.13.156 read from T0547.t2k.many.frag # found chain 1dg6A in training set T0547 13 :NFIIKNGKV 1dg6A 247 :IFELKENDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26508 # 1u5xA.13.105 read from T0547.t2k.many.frag # found chain 1u5xA in training set T0547 13 :NFIIKNGKV 1u5xA 207 :VFHLHQGDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26509 # 1qwyA.13.24 read from T0547.t2k.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)G19 (1qwyA)N56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1qwyA)G57 because T (delta_L) conformation "forbidden" or filtered. T0547 13 :NFIIKN 1qwyA 50 :YYTIDS T0547 21 :V 1qwyA 58 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=26511 # 1yu0A.13.73 read from T0547.t2k.many.frag # found chain 1yu0A in training set Warning: unaligning (T0547)K17 (1yu0A)K78 because P (beta_P) conformation "forbidden" or filtered. T0547 13 :NFII 1yu0A 74 :TASI T0547 18 :NGKV 1yu0A 79 :AGTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26513 # 1o12A.13.30 read from T0547.t2k.many.frag # found chain 1o12A in template set T0547 13 :NFIIKNGKV 1o12A 19 :DVEIEEGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26514 # 2bhoA.13.72 read from T0547.t2k.many.frag # found chain 2bhoA in template set Warning: unaligning (T0547)K17 (2bhoA)L75 because E (beta_S) conformation "forbidden" or filtered. T0547 13 :NFII 2bhoA 71 :VQGR T0547 18 :NGKV 2bhoA 76 :DGKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26516 # 1knmA.13.50 read from T0547.t2k.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)K17 (1knmA)Y55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1knmA)G56 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1knmA)K58 because P (beta_P) conformation "forbidden" or filtered. T0547 13 :NFII 1knmA 51 :ELRV T0547 19 :G 1knmA 57 :D T0547 21 :V 1knmA 59 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=26519 # 1pg6A.13.26 read from T0547.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)N13 (1pg6A)E20 because P (beta_P) conformation "forbidden" or filtered. T0547 14 :FIIKNGKV 1pg6A 21 :IDLEHGGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26520 # 1f00I.13.144 read from T0547.t2k.many.frag # found chain 1f00I in template set Warning: unaligning (T0547)K17 (1f00I)D806 because P (beta_P) conformation "forbidden" or filtered. T0547 13 :NFII 1f00I 802 :IASV T0547 18 :NGKV 1f00I 807 :ASSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26522 # 1zz1A.13.99 read from T0547.t2k.many.frag # found chain 1zz1A in training set T0547 13 :NFIIKNGKV 1zz1A 100 :ITMMGNGGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26523 2f6eA expands to /projects/compbio/data/pdb/2f6e.pdb.gz 2f6eA:# 2f6eA.13.12 read from T0547.t2k.many.frag # adding 2f6eA to template set # found chain 2f6eA in template set Warning: unaligning (T0547)N18 (2f6eA)D19 because L (left) conformation "forbidden" or filtered. T0547 13 :NFIIK 2f6eA 14 :GYKII T0547 19 :GKV 2f6eA 20 :NKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26525 # 1vqoZ.13.36 read from T0547.t2k.many.frag # found chain 1vqoZ in template set Warning: unaligning (T0547)N18 (1vqoZ)G51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1vqoZ)T52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1vqoZ)G53 because T (delta_L) conformation "forbidden" or filtered. T0547 13 :NFIIK 1vqoZ 46 :RVDRQ T0547 21 :V 1vqoZ 54 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=26527 # 1a62.13.53 read from T0547.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)N13 (1a62)V54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1a62)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 14 :FIIKNG 1a62 55 :LEILQD T0547 21 :V 1a62 62 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=26529 1l5aA expands to /projects/compbio/data/pdb/1l5a.pdb.gz 1l5aA:# 1l5aA.13.52 read from T0547.t2k.many.frag # adding 1l5aA to template set # found chain 1l5aA in template set Warning: unaligning (T0547)G19 (1l5aA)Q59 because G (3-10) conformation "forbidden" or filtered. T0547 13 :NFIIKN 1l5aA 53 :RARFSA T0547 20 :KV 1l5aA 60 :GE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26531 # 1lktA.13.58 read from T0547.t2k.many.frag # found chain 1lktA in template set Warning: unaligning (T0547)N13 (1lktA)P64 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1lktA)A70 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1lktA)G71 because T (delta_L) conformation "forbidden" or filtered. T0547 14 :FIIKN 1lktA 65 :LIINA T0547 21 :V 1lktA 72 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=26533 # 1eu1A.13.17 read from T0547.t2k.many.frag # found chain 1eu1A in training set T0547 13 :NFIIKNGKV 1eu1A 18 :KARVENGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26534 # 1kp6A.13.41 read from T0547.t2k.many.frag # found chain 1kp6A in training set Warning: unaligning (T0547)G19 (1kp6A)A48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1kp6A)G49 because L (left) conformation "forbidden" or filtered. T0547 13 :NFIIKN 1kp6A 42 :SYYDAR T0547 21 :V 1kp6A 50 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=26536 # 1rgxA.13.83 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)K17 (1rgxA)R68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1rgxA)E69 because L (left) conformation "forbidden" or filtered. T0547 13 :NFII 1rgxA 64 :SWDI T0547 19 :GKV 1rgxA 70 :EKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26538 # 1vqoT.13.39 read from T0547.t2k.many.frag # found chain 1vqoT in template set Warning: unaligning (T0547)N13 (1vqoT)N39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F14 (1vqoT)V40 because Y (epsilon') conformation "forbidden" or filtered. T0547 15 :IIKNGKV 1vqoT 41 :RVNAGDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=26539 # 1euwA.13.107 read from T0547.t2k.many.frag # found chain 1euwA in training set Warning: unaligning (T0547)K20 (1euwA)E115 because P (beta_P) conformation "forbidden" or filtered. T0547 13 :NFIIKNG 1euwA 108 :SFTIQPG T0547 21 :V 1euwA 116 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=26541 # 1wlgA.13.219 read from T0547.t2k.many.frag # found chain 1wlgA in training set Warning: unaligning (T0547)N13 (1wlgA)S290 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FIIKNGKV 1wlgA 291 :YQINNDGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=26542 # 1iomA.13.16 read from T0547.t2k.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)V21 (1iomA)G25 because L (left) conformation "forbidden" or filtered. T0547 13 :NFIIKNGK 1iomA 17 :MCYIDGQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=26543 # 1onwA.14.27 read from T0547.t2k.many.frag # found chain 1onwA in training set T0547 14 :FIIKNGKVC 1onwA 28 :VLVANGKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=26544 # 1p1mA.14.20 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)K17 (1p1mA)E24 because E (beta_S) conformation "forbidden" or filtered. T0547 14 :FII 1p1mA 21 :VEI T0547 18 :NGKVC 1p1mA 25 :NGTIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26546 # 1fcdA.14.77 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)G19 (1fcdA)D83 because S (epsilon) conformation "forbidden" or filtered. T0547 14 :FIIKN 1fcdA 78 :TGIDP T0547 20 :KVC 1fcdA 84 :KKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26548 # 1iqzA.14.24 read from T0547.t2k.many.frag # found chain 1iqzA in training set Warning: unaligning (T0547)I15 (1iqzA)D26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1iqzA)D30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1iqzA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 14 :F 1iqzA 25 :Y T0547 16 :IKN 1iqzA 27 :YDE T0547 21 :VC 1iqzA 32 :IA Number of specific fragments extracted= 3 number of extra gaps= 2 total=26551 # 1pg6A.14.27 read from T0547.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)K20 (1pg6A)G27 because P (beta_P) conformation "forbidden" or filtered. T0547 14 :FIIKNG 1pg6A 21 :IDLEHG T0547 21 :VC 1pg6A 28 :SV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26553 # 1dg6A.14.157 read from T0547.t2k.many.frag # found chain 1dg6A in training set T0547 14 :FIIKNGKVC 1dg6A 248 :FELKENDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26554 # 1qwyA.14.25 read from T0547.t2k.many.frag # found chain 1qwyA in training set T0547 14 :FIIKNGKVC 1qwyA 51 :YTIDSNGDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26555 # 1d0qA.14.49 read from T0547.t2k.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)V21 (1d0qA)Q57 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)C22 (1d0qA)I58 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FIIKNGK 1d0qA 50 :FSVSPEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26556 # 1u5xA.14.106 read from T0547.t2k.many.frag # found chain 1u5xA in training set T0547 14 :FIIKNGKVC 1u5xA 208 :FHLHQGDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=26557 # 1l5aA.14.53 read from T0547.t2k.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)K17 (1l5aA)S57 because P (beta_P) conformation "forbidden" or filtered. T0547 14 :FII 1l5aA 54 :ARF T0547 18 :NGKVC 1l5aA 58 :AQGEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26559 # 1o9wA.14.45 read from T0547.t2k.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)K17 (1o9wA)S49 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FII 1o9wA 46 :WHI T0547 18 :NGKVC 1o9wA 50 :KGFCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26561 # 2bhoA.14.73 read from T0547.t2k.many.frag # found chain 2bhoA in template set T0547 14 :FIIKNGKVC 2bhoA 72 :QGRLDGKPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26562 # 1zy9A.14.136 read from T0547.t2k.many.frag # found chain 1zy9A in template set Warning: unaligning (T0547)K17 (1zy9A)E128 because D (zeta) conformation "forbidden" or filtered. T0547 14 :FII 1zy9A 125 :FAV T0547 18 :NGKVC 1zy9A 129 :DGELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26564 # 1o12A.14.31 read from T0547.t2k.many.frag # found chain 1o12A in template set T0547 14 :FIIKNGKVC 1o12A 20 :VEIEEGKIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26565 # 2f6eA.14.13 read from T0547.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)N18 (2f6eA)D19 because L (left) conformation "forbidden" or filtered. T0547 14 :FIIK 2f6eA 15 :YKII T0547 19 :GKVC 2f6eA 20 :NKNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26567 # 1rgxA.14.84 read from T0547.t2k.many.frag # found chain 1rgxA in training set T0547 14 :FIIKNGKVC 1rgxA 65 :WDIREEKVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26568 # 1kp6A.14.42 read from T0547.t2k.many.frag # found chain 1kp6A in training set T0547 14 :FIIKNGKVC 1kp6A 43 :YYDARAGHC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26569 # 1dqgA.14.46 read from T0547.t2k.many.frag # found chain 1dqgA in training set T0547 14 :FIIKNGKVC 1dqgA 47 :IMSVAFKLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26570 # 1vqoZ.14.37 read from T0547.t2k.many.frag # found chain 1vqoZ in template set Warning: unaligning (T0547)N18 (1vqoZ)G51 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FIIK 1vqoZ 47 :VDRQ T0547 19 :GKVC 1vqoZ 52 :TGIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=26572 # 1f00I.14.145 read from T0547.t2k.many.frag # found chain 1f00I in template set Warning: unaligning (T0547)K17 (1f00I)D806 because P (beta_P) conformation "forbidden" or filtered. T0547 14 :FII 1f00I 803 :ASV T0547 18 :NGKVC 1f00I 807 :ASSGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=26574 # 1vqoT.14.40 read from T0547.t2k.many.frag # found chain 1vqoT in template set Warning: unaligning (T0547)N18 (1vqoT)A44 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1vqoT)G45 because G (3-10) conformation "forbidden" or filtered. T0547 14 :FIIK 1vqoT 40 :VRVN T0547 20 :KVC 1vqoT 46 :DTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26576 # 1lktA.14.59 read from T0547.t2k.many.frag # found chain 1lktA in template set Warning: unaligning (T0547)K17 (1lktA)N68 because P (beta_P) conformation "forbidden" or filtered. T0547 14 :FII 1lktA 65 :LII T0547 18 :NGKVC 1lktA 69 :AAGKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26578 # 1a62.14.54 read from T0547.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)K20 (1a62)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 14 :FIIKNG 1a62 55 :LEILQD T0547 21 :VC 1a62 62 :FG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26580 2fn0A expands to /projects/compbio/data/pdb/2fn0.pdb.gz 2fn0A:Skipped atom 173, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 175, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 177, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 179, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 181, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 183, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1104, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1106, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1108, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1110, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1112, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1114, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1116, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1118, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1120, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2397, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2399, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2401, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2403, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2405, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2407, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2409, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2530, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2532, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2534, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2536, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2538, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2540, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2542, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2544, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2861, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2863, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2865, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2867, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2869, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2871, because occupancy 0.500 <= existing 0.500 in 2fn0A # 2fn0A.14.130 read from T0547.t2k.many.frag # adding 2fn0A to template set # found chain 2fn0A in template set T0547 14 :FIIKNGKVC 2fn0A 128 :LIFEKGNVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26581 # 1wlgA.14.220 read from T0547.t2k.many.frag # found chain 1wlgA in training set Warning: unaligning (T0547)G19 (1wlgA)D296 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1wlgA)G297 because T (delta_L) conformation "forbidden" or filtered. T0547 14 :FIIKN 1wlgA 291 :YQINN T0547 21 :VC 1wlgA 298 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26583 # 1lxjA.14.39 read from T0547.t2k.many.frag # found chain 1lxjA in training set Warning: unaligning (T0547)K17 (1lxjA)H43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1lxjA)A45 because G (3-10) conformation "forbidden" or filtered. T0547 14 :FII 1lxjA 40 :STL T0547 18 :N 1lxjA 44 :S T0547 20 :KVC 1lxjA 46 :GTT Number of specific fragments extracted= 3 number of extra gaps= 2 total=26586 # 1g3p.14.140 read from T0547.t2k.many.frag # found chain 1g3p in training set Warning: unaligning (T0547)N18 (1g3p)Q145 because L (left) conformation "forbidden" or filtered. T0547 14 :FIIK 1g3p 141 :FRNR T0547 19 :GKVC 1g3p 146 :GALT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26588 # 1eexA.14.40 read from T0547.t2k.many.frag # found chain 1eexA in training set T0547 14 :FIIKNGKVC 1eexA 41 :IKIVNGAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26589 # 1knmA.14.83 read from T0547.t2k.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)K17 (1knmA)N87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1knmA)D89 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1knmA)G90 because T (delta_L) conformation "forbidden" or filtered. T0547 14 :FII 1knmA 84 :WRL T0547 18 :N 1knmA 88 :S T0547 21 :VC 1knmA 91 :SV Number of specific fragments extracted= 3 number of extra gaps= 2 total=26592 # 1nkiA.14.30 read from T0547.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)G19 (1nkiA)Q36 because G (3-10) conformation "forbidden" or filtered. T0547 14 :FIIKN 1nkiA 31 :EARWD T0547 20 :KVC 1nkiA 37 :GAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26594 # 1onwA.15.28 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)N18 (1onwA)N32 because L (left) conformation "forbidden" or filtered. T0547 15 :IIK 1onwA 29 :LVA T0547 19 :GKVCI 1onwA 33 :GKIIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26596 # 1p1mA.15.21 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)N18 (1p1mA)N25 because L (left) conformation "forbidden" or filtered. T0547 15 :IIK 1p1mA 22 :EIE T0547 19 :GKVCI 1p1mA 26 :GTIKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26598 # 1pg6A.15.28 read from T0547.t2k.many.frag # found chain 1pg6A in training set T0547 15 :IIKNGKVCI 1pg6A 22 :DLEHGGSVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26599 # 1iqzA.15.25 read from T0547.t2k.many.frag # found chain 1iqzA in training set Warning: unaligning (T0547)G19 (1iqzA)D30 because G (3-10) conformation "forbidden" or filtered. T0547 15 :IIKN 1iqzA 26 :DYDE T0547 20 :KVCI 1iqzA 31 :GIAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26601 # 1qwyA.15.26 read from T0547.t2k.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)G19 (1qwyA)N56 because G (3-10) conformation "forbidden" or filtered. T0547 15 :IIKN 1qwyA 52 :TIDS T0547 20 :KVCI 1qwyA 57 :GDYH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26603 # 1fcdA.15.78 read from T0547.t2k.many.frag # found chain 1fcdA in template set T0547 15 :IIKNGKVCI 1fcdA 79 :GIDPDKKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26604 # 1dg6A.15.158 read from T0547.t2k.many.frag # found chain 1dg6A in training set Warning: unaligning (T0547)N18 (1dg6A)E252 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I23 (1dg6A)F257 because Y (epsilon') conformation "forbidden" or filtered. T0547 15 :IIK 1dg6A 249 :ELK T0547 19 :GKVC 1dg6A 253 :NDRI Number of specific fragments extracted= 2 number of extra gaps= 2 total=26606 # 2bhoA.15.74 read from T0547.t2k.many.frag # found chain 2bhoA in template set T0547 15 :IIKNGKVCI 2bhoA 73 :GRLDGKPIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26607 # 2f6eA.15.14 read from T0547.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)N18 (2f6eA)D19 because L (left) conformation "forbidden" or filtered. T0547 15 :IIK 2f6eA 16 :KII T0547 19 :GKVCI 2f6eA 20 :NKNFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26609 # 1kp6A.15.43 read from T0547.t2k.many.frag # found chain 1kp6A in training set T0547 15 :IIKNGKVCI 1kp6A 44 :YDARAGHCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26610 # 1u5xA.15.107 read from T0547.t2k.many.frag # found chain 1u5xA in training set Warning: unaligning (T0547)N18 (1u5xA)Q212 because P (beta_P) conformation "forbidden" or filtered. T0547 15 :IIK 1u5xA 209 :HLH T0547 19 :GKVCI 1u5xA 213 :GDIIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26612 # 1d0qA.15.50 read from T0547.t2k.many.frag # found chain 1d0qA in training set T0547 15 :IIKNGKVCI 1d0qA 51 :SVSPEKQIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26613 # 1l5aA.15.54 read from T0547.t2k.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)G19 (1l5aA)Q59 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1l5aA)G60 because T (delta_L) conformation "forbidden" or filtered. T0547 15 :IIKN 1l5aA 55 :RFSA T0547 21 :VCI 1l5aA 61 :ELY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26615 1xiwB expands to /projects/compbio/data/pdb/1xiw.pdb.gz 1xiwB:# 1xiwB.15.5 read from T0547.t2k.many.frag # adding 1xiwB to template set # found chain 1xiwB in template set Warning: unaligning (T0547)G19 (1xiwB)D10 because G (3-10) conformation "forbidden" or filtered. T0547 15 :IIKN 1xiwB 6 :EELE T0547 20 :KVCI 1xiwB 11 :RVFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26617 # 1rgxA.15.85 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)K17 (1rgxA)R68 because P (beta_P) conformation "forbidden" or filtered. T0547 15 :II 1rgxA 66 :DI T0547 18 :NGKVCI 1rgxA 69 :EEKVCH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26619 # 1zy9A.15.137 read from T0547.t2k.many.frag # found chain 1zy9A in template set Warning: unaligning (T0547)N18 (1zy9A)D129 because L (left) conformation "forbidden" or filtered. T0547 15 :IIK 1zy9A 126 :AVE T0547 19 :GKVCI 1zy9A 130 :GELVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26621 # 1lxjA.15.40 read from T0547.t2k.many.frag # found chain 1lxjA in training set Warning: unaligning (T0547)K17 (1lxjA)H43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1lxjA)G46 because Y (epsilon') conformation "forbidden" or filtered. T0547 15 :II 1lxjA 41 :TL T0547 18 :NG 1lxjA 44 :SA T0547 21 :VCI 1lxjA 47 :TTI Number of specific fragments extracted= 3 number of extra gaps= 2 total=26624 # 1o12A.15.32 read from T0547.t2k.many.frag # found chain 1o12A in template set T0547 15 :IIKNGKVCI 1o12A 21 :EIEEGKIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26625 # 1vqoT.15.41 read from T0547.t2k.many.frag # found chain 1vqoT in template set T0547 15 :IIKNGKVCI 1vqoT 41 :RVNAGDTVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26626 # 1a62.15.55 read from T0547.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)K17 (1a62)L58 because P (beta_P) conformation "forbidden" or filtered. T0547 15 :II 1a62 56 :EI T0547 18 :NGKVCI 1a62 59 :QDGFGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26628 # 1g3p.15.141 read from T0547.t2k.many.frag # found chain 1g3p in training set Warning: unaligning (T0547)K17 (1g3p)R144 because D (zeta) conformation "forbidden" or filtered. T0547 15 :II 1g3p 142 :RN T0547 18 :NGKVCI 1g3p 145 :QGALTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26630 1kg0C expands to /projects/compbio/data/pdb/1kg0.pdb.gz 1kg0C:# 1kg0C.15.23 read from T0547.t2k.many.frag # adding 1kg0C to template set # found chain 1kg0C in template set Warning: unaligning (T0547)N18 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1kg0C)G113 Warning: unaligning (T0547)G19 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1kg0C)G113 T0547 15 :IIK 1kg0C 109 :FSY T0547 20 :KVCI 1kg0C 114 :CCFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26632 # 2fn0A.15.131 read from T0547.t2k.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)N18 (2fn0A)K132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (2fn0A)N134 because E (beta_S) conformation "forbidden" or filtered. T0547 15 :IIK 2fn0A 129 :IFE T0547 19 :G 2fn0A 133 :G T0547 21 :VCI 2fn0A 135 :VTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=26635 # 1vqoZ.15.38 read from T0547.t2k.many.frag # found chain 1vqoZ in template set Warning: unaligning (T0547)N18 (1vqoZ)G51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1vqoZ)G53 because T (delta_L) conformation "forbidden" or filtered. T0547 15 :IIK 1vqoZ 48 :DRQ T0547 19 :G 1vqoZ 52 :T T0547 21 :VCI 1vqoZ 54 :IWQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=26638 # 1nkiA.15.31 read from T0547.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)K17 (1nkiA)W34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1nkiA)G37 because Y (epsilon') conformation "forbidden" or filtered. T0547 15 :II 1nkiA 32 :AR T0547 18 :NG 1nkiA 35 :DQ T0547 21 :VCI 1nkiA 38 :AYL Number of specific fragments extracted= 3 number of extra gaps= 2 total=26641 # 1eexA.15.41 read from T0547.t2k.many.frag # found chain 1eexA in training set T0547 15 :IIKNGKVCI 1eexA 42 :KIVNGAVTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26642 # 1knmA.15.84 read from T0547.t2k.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)K17 (1knmA)N87 because P (beta_P) conformation "forbidden" or filtered. T0547 15 :II 1knmA 85 :RL T0547 18 :NGKVCI 1knmA 88 :SDGSVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26644 # 1dqgA.15.47 read from T0547.t2k.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G19 (1dqgA)F52 because G (3-10) conformation "forbidden" or filtered. T0547 15 :IIKN 1dqgA 48 :MSVA T0547 20 :KVCI 1dqgA 53 :KLCL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26646 # 1wlgA.15.221 read from T0547.t2k.many.frag # found chain 1wlgA in training set T0547 15 :IIKNGKVCI 1wlgA 292 :QINNDGTVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26647 # 1f00I.15.146 read from T0547.t2k.many.frag # found chain 1f00I in template set T0547 15 :IIKNGKVCI 1f00I 804 :SVDASSGQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26648 # 1qwyA.16.27 read from T0547.t2k.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)G19 (1qwyA)N56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1qwyA)G57 because T (delta_L) conformation "forbidden" or filtered. T0547 16 :IKN 1qwyA 53 :IDS T0547 21 :VCIN 1qwyA 58 :DYHH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26650 # 1xiwB.16.6 read from T0547.t2k.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)N18 (1xiwB)E9 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1xiwB)D10 because G (3-10) conformation "forbidden" or filtered. T0547 16 :IK 1xiwB 7 :EL T0547 20 :KVCIN 1xiwB 11 :RVFVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26652 # 1kp6A.16.44 read from T0547.t2k.many.frag # found chain 1kp6A in training set Warning: unaligning (T0547)N24 (1kp6A)F53 because Y (epsilon') conformation "forbidden" or filtered. T0547 16 :IKNGKVCI 1kp6A 45 :DARAGHCL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26653 # 1onwA.16.29 read from T0547.t2k.many.frag # found chain 1onwA in training set T0547 16 :IKNGKVCIN 1onwA 30 :VANGKIIAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26654 # 1kg0C.16.24 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)N18 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1kg0C)G113 Warning: unaligning (T0547)G19 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1kg0C)G113 T0547 16 :IK 1kg0C 110 :SY T0547 20 :KVCIN 1kg0C 114 :CCFYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26656 # 1pg6A.16.29 read from T0547.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)K20 (1pg6A)G27 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1pg6A)L31 because E (beta_S) conformation "forbidden" or filtered. T0547 16 :IKNG 1pg6A 23 :LEHG T0547 21 :VCI 1pg6A 28 :SVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=26658 # 1rutX.16.106 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)N18 (1rutX)P124 because P (beta_P) conformation "forbidden" or filtered. T0547 16 :IK 1rutX 122 :LV T0547 19 :GKVCIN 1rutX 125 :GDRFHY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26660 # 2f6eA.16.15 read from T0547.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)N18 (2f6eA)D19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (2f6eA)F25 because E (beta_S) conformation "forbidden" or filtered. T0547 16 :IK 2f6eA 17 :II T0547 19 :GKVCI 2f6eA 20 :NKNFY Number of specific fragments extracted= 2 number of extra gaps= 2 total=26662 # 1l5aA.16.55 read from T0547.t2k.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)G19 (1l5aA)Q59 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1l5aA)G60 because T (delta_L) conformation "forbidden" or filtered. T0547 16 :IKN 1l5aA 56 :FSA T0547 21 :VCIN 1l5aA 61 :ELYW Number of specific fragments extracted= 2 number of extra gaps= 1 total=26664 # 1fcdA.16.79 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)K17 (1fcdA)D81 because P (beta_P) conformation "forbidden" or filtered. T0547 16 :I 1fcdA 80 :I T0547 18 :NGKVCIN 1fcdA 82 :PDKKLVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26666 # 1iqzA.16.26 read from T0547.t2k.many.frag # found chain 1iqzA in training set T0547 16 :IKNGKVCIN 1iqzA 27 :YDEDGIAYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26667 # 2bhoA.16.75 read from T0547.t2k.many.frag # found chain 2bhoA in template set Warning: unaligning (T0547)N18 (2bhoA)D76 because L (left) conformation "forbidden" or filtered. T0547 16 :IK 2bhoA 74 :RL T0547 19 :GKVCIN 2bhoA 77 :GKPILW Number of specific fragments extracted= 2 number of extra gaps= 1 total=26669 # 1dqgA.16.48 read from T0547.t2k.many.frag # found chain 1dqgA in training set T0547 16 :IKNGKVCIN 1dqgA 49 :SVAFKLCLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26670 # 1ypqA.16.14 read from T0547.t2k.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)N18 (1ypqA)G152 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1ypqA)E153 because G (3-10) conformation "forbidden" or filtered. T0547 16 :IK 1ypqA 150 :WH T0547 20 :KVCIN 1ypqA 154 :NCYLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26672 # 1u5xA.16.108 read from T0547.t2k.many.frag # found chain 1u5xA in training set Warning: unaligning (T0547)N18 (1u5xA)Q212 because P (beta_P) conformation "forbidden" or filtered. T0547 16 :IK 1u5xA 210 :LH T0547 19 :GKVCIN 1u5xA 213 :GDIITV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26674 # 1dg6A.16.159 read from T0547.t2k.many.frag # found chain 1dg6A in training set Warning: unaligning (T0547)N18 (1dg6A)E252 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1dg6A)D254 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1dg6A)V258 because E (beta_S) conformation "forbidden" or filtered. T0547 16 :IK 1dg6A 250 :LK T0547 19 :G 1dg6A 253 :N T0547 21 :VCI 1dg6A 255 :RIF Number of specific fragments extracted= 3 number of extra gaps= 3 total=26677 # 2fn0A.16.132 read from T0547.t2k.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)N18 (2fn0A)K132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (2fn0A)Y138 because E (beta_S) conformation "forbidden" or filtered. T0547 16 :IK 2fn0A 130 :FE T0547 19 :GKVCI 2fn0A 133 :GNVTV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26679 1x9zA expands to /projects/compbio/data/pdb/1x9z.pdb.gz 1x9zA:Skipped atom 247, because occupancy 0.500 <= existing 0.500 in 1x9zA Skipped atom 249, because occupancy 0.500 <= existing 0.500 in 1x9zA Skipped atom 251, because occupancy 0.500 <= existing 0.500 in 1x9zA Skipped atom 253, because occupancy 0.500 <= existing 0.500 in 1x9zA Skipped atom 255, because occupancy 0.500 <= existing 0.500 in 1x9zA Skipped atom 257, because occupancy 0.500 <= existing 0.500 in 1x9zA Skipped atom 259, because occupancy 0.500 <= existing 0.500 in 1x9zA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1x9zA.16.14 read from T0547.t2k.many.frag # adding 1x9zA to template set # found chain 1x9zA in template set Warning: unaligning (T0547)K17 (1x9zA)H443 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1x9zA)S444 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1x9zA)C446 because E (beta_S) conformation "forbidden" or filtered. T0547 16 :I 1x9zA 442 :V T0547 19 :G 1x9zA 445 :D T0547 21 :VCIN 1x9zA 447 :ALLE Number of specific fragments extracted= 3 number of extra gaps= 2 total=26682 # 1d0qA.16.51 read from T0547.t2k.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)V21 (1d0qA)Q57 because L (left) conformation "forbidden" or filtered. T0547 16 :IKNGK 1d0qA 52 :VSPEK T0547 22 :CIN 1d0qA 58 :IFH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26684 # 2a2cA.16.216 read from T0547.t2k.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K17 (2a2cA)E198 because E (beta_S) conformation "forbidden" or filtered. T0547 16 :I 2a2cA 197 :A T0547 18 :NGKVCIN 2a2cA 199 :EGTAKLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26686 # 1zy9A.16.138 read from T0547.t2k.many.frag # found chain 1zy9A in template set Warning: unaligning (T0547)K17 (1zy9A)E128 because D (zeta) conformation "forbidden" or filtered. T0547 16 :I 1zy9A 127 :V T0547 18 :NGKVCIN 1zy9A 129 :DGELVAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26688 # 1rgxA.16.86 read from T0547.t2k.many.frag # found chain 1rgxA in training set T0547 16 :IKNGKVCIN 1rgxA 67 :IREEKVCHC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26689 # 1p1mA.16.22 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)K20 (1p1mA)T27 because E (beta_S) conformation "forbidden" or filtered. T0547 16 :IKNG 1p1mA 23 :IENG T0547 21 :VCIN 1p1mA 28 :IKRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26691 # 1vqoZ.16.39 read from T0547.t2k.many.frag # found chain 1vqoZ in template set Warning: unaligning (T0547)K17 (1vqoZ)Q50 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1vqoZ)G51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1vqoZ)G53 because T (delta_L) conformation "forbidden" or filtered. T0547 16 :I 1vqoZ 49 :R T0547 19 :G 1vqoZ 52 :T T0547 21 :VCIN 1vqoZ 54 :IWQC Number of specific fragments extracted= 3 number of extra gaps= 2 total=26694 # 1lxjA.16.41 read from T0547.t2k.many.frag # found chain 1lxjA in training set Warning: unaligning (T0547)K17 (1lxjA)H43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1lxjA)A45 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1lxjA)G46 because Y (epsilon') conformation "forbidden" or filtered. T0547 16 :I 1lxjA 42 :L T0547 18 :N 1lxjA 44 :S T0547 21 :VCIN 1lxjA 47 :TTIE Number of specific fragments extracted= 3 number of extra gaps= 2 total=26697 # 1xodA.16.76 read from T0547.t2k.many.frag # found chain 1xodA in training set T0547 16 :IKNGKVCIN 1xodA 82 :VTPTFHHWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26698 # 1g3p.16.142 read from T0547.t2k.many.frag # found chain 1g3p in training set Warning: unaligning (T0547)N18 (1g3p)Q145 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1g3p)Y151 because P (beta_P) conformation "forbidden" or filtered. T0547 16 :IK 1g3p 143 :NR T0547 19 :GKVCI 1g3p 146 :GALTV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26700 # 1eexA.16.42 read from T0547.t2k.many.frag # found chain 1eexA in training set T0547 16 :IKNGKVCIN 1eexA 43 :IVNGAVTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26701 1wv8A expands to /projects/compbio/data/pdb/1wv8.pdb.gz 1wv8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wv8A.16.10 read from T0547.t2k.many.frag # adding 1wv8A to template set # found chain 1wv8A in template set Warning: unaligning (T0547)G19 (1wv8A)A14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1wv8A)G15 because L (left) conformation "forbidden" or filtered. T0547 16 :IKN 1wv8A 11 :DGE T0547 21 :VCIN 1wv8A 16 :VWVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26703 # 1xrkA.16.33 read from T0547.t2k.many.frag # found chain 1xrkA in training set Warning: unaligning (T0547)G19 (1xrkA)D37 because G (3-10) conformation "forbidden" or filtered. T0547 16 :IKN 1xrkA 34 :VED T0547 20 :KVCIN 1xrkA 38 :FAGVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26705 # 1rutX.17.107 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)N18 (1rutX)P124 because P (beta_P) conformation "forbidden" or filtered. T0547 17 :K 1rutX 123 :V T0547 19 :GKVCINY 1rutX 125 :GDRFHYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26707 # 1kg0C.17.25 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)N18 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1kg0C)G113 Warning: unaligning (T0547)G19 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1kg0C)G113 T0547 17 :K 1kg0C 111 :Y T0547 20 :KVCINY 1kg0C 114 :CCFYFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26709 # 1qwyA.17.28 read from T0547.t2k.many.frag # found chain 1qwyA in training set T0547 17 :KNGKVCINY 1qwyA 54 :DSNGDYHHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26710 # 1kp6A.17.45 read from T0547.t2k.many.frag # found chain 1kp6A in training set Warning: unaligning (T0547)G19 (1kp6A)A48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)C22 (1kp6A)C51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1kp6A)F53 because Y (epsilon') conformation "forbidden" or filtered. T0547 17 :KN 1kp6A 46 :AR T0547 20 :KV 1kp6A 49 :GH T0547 23 :I 1kp6A 52 :L T0547 25 :Y 1kp6A 54 :S Number of specific fragments extracted= 4 number of extra gaps= 3 total=26714 # 1xiwB.17.7 read from T0547.t2k.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)N18 (1xiwB)E9 because S (epsilon) conformation "forbidden" or filtered. T0547 17 :K 1xiwB 8 :L T0547 19 :GKVCINY 1xiwB 10 :DRVFVNC Number of specific fragments extracted= 2 number of extra gaps= 1 total=26716 # 1pg6A.17.30 read from T0547.t2k.many.frag # found chain 1pg6A in training set T0547 17 :KNGKVCINY 1pg6A 24 :EHGGSVYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26717 # 1dqgA.17.49 read from T0547.t2k.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G19 (1dqgA)F52 because G (3-10) conformation "forbidden" or filtered. T0547 17 :KN 1dqgA 50 :VA T0547 20 :KVCINY 1dqgA 53 :KLCLGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26719 # 1l5aA.17.56 read from T0547.t2k.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)G19 (1l5aA)Q59 because G (3-10) conformation "forbidden" or filtered. T0547 17 :KN 1l5aA 57 :SA T0547 20 :KVCINY 1l5aA 60 :GELYWH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26721 # 2f6eA.17.16 read from T0547.t2k.many.frag # found chain 2f6eA in template set T0547 17 :KNGKVCINY 2f6eA 18 :IDNKNFYFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26722 # 1onwA.17.30 read from T0547.t2k.many.frag # found chain 1onwA in training set T0547 17 :KNGKVCINY 1onwA 31 :ANGKIIAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26723 # 1ypqA.17.15 read from T0547.t2k.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)N18 (1ypqA)G152 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1ypqA)N154 because E (beta_S) conformation "forbidden" or filtered. T0547 17 :K 1ypqA 151 :H T0547 19 :G 1ypqA 153 :E T0547 21 :VCINY 1ypqA 155 :CYLFS Number of specific fragments extracted= 3 number of extra gaps= 2 total=26726 # 2a2cA.17.217 read from T0547.t2k.many.frag # found chain 2a2cA in training set T0547 17 :KNGKVCINY 2a2cA 198 :EEGTAKLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26727 # 1fcdA.17.80 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)K17 (1fcdA)D81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1fcdA)D83 because S (epsilon) conformation "forbidden" or filtered. T0547 18 :N 1fcdA 82 :P T0547 20 :KVCINY 1fcdA 84 :KKLVKT Number of specific fragments extracted= 2 number of extra gaps= 2 total=26729 # 1pkhA.17.59 read from T0547.t2k.many.frag # found chain 1pkhA in training set T0547 17 :KNGKVCINY 1pkhA 60 :KIKNSILVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26730 # 1d0qA.17.52 read from T0547.t2k.many.frag # found chain 1d0qA in training set T0547 17 :KNGKVCINY 1d0qA 53 :SPEKQIFHC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26731 # 1iqzA.17.27 read from T0547.t2k.many.frag # found chain 1iqzA in training set T0547 17 :KNGKVCINY 1iqzA 28 :DEDGIAYVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26732 # 2bhoA.17.76 read from T0547.t2k.many.frag # found chain 2bhoA in template set Warning: unaligning (T0547)N18 (2bhoA)D76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (2bhoA)K78 because P (beta_P) conformation "forbidden" or filtered. T0547 17 :K 2bhoA 75 :L T0547 19 :G 2bhoA 77 :G T0547 21 :VCINY 2bhoA 79 :PILWS Number of specific fragments extracted= 3 number of extra gaps= 2 total=26735 # 1wv8A.17.11 read from T0547.t2k.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)K20 (1wv8A)G15 because L (left) conformation "forbidden" or filtered. T0547 17 :KNG 1wv8A 12 :GEA T0547 21 :VCINY 1wv8A 16 :VWVAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26737 # 1kpf.17.46 read from T0547.t2k.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)N18 (1kpf)A48 because Y (epsilon') conformation "forbidden" or filtered. T0547 17 :K 1kpf 47 :Q T0547 19 :GKVCINY 1kpf 49 :PTHFLVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26739 # 1xodA.17.77 read from T0547.t2k.many.frag # found chain 1xodA in training set Warning: unaligning (T0547)K17 (1xodA)T83 because Y (epsilon') conformation "forbidden" or filtered. T0547 18 :NGKVCINY 1xodA 84 :PTFHHWRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26740 # 1x9zA.17.15 read from T0547.t2k.many.frag # found chain 1x9zA in template set Warning: unaligning (T0547)K17 (1x9zA)H443 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1x9zA)S444 because T (delta_L) conformation "forbidden" or filtered. T0547 19 :GKVCINY 1x9zA 445 :DCALLER Number of specific fragments extracted= 1 number of extra gaps= 1 total=26741 # 2fn0A.17.133 read from T0547.t2k.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)N18 (2fn0A)K132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (2fn0A)Y138 because E (beta_S) conformation "forbidden" or filtered. T0547 17 :K 2fn0A 131 :E T0547 19 :GKVCI 2fn0A 133 :GNVTV T0547 25 :Y 2fn0A 139 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=26744 # 1rgxA.17.58 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)G19 (1rgxA)R41 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1rgxA)G42 because S (epsilon) conformation "forbidden" or filtered. T0547 17 :KN 1rgxA 39 :SS T0547 21 :VCINY 1rgxA 43 :KLASC Number of specific fragments extracted= 2 number of extra gaps= 1 total=26746 # 1u5xA.17.109 read from T0547.t2k.many.frag # found chain 1u5xA in training set T0547 17 :KNGKVCINY 1u5xA 211 :HQGDIITVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26747 # 1knmA.17.86 read from T0547.t2k.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)K17 (1knmA)N87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1knmA)D89 because G (3-10) conformation "forbidden" or filtered. T0547 18 :N 1knmA 88 :S T0547 20 :KVCINY 1knmA 90 :GSVVGV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26749 # 1lktA.17.62 read from T0547.t2k.many.frag # found chain 1lktA in template set T0547 17 :KNGKVCINY 1lktA 68 :NAAGKIVYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26750 # 1p1mA.17.23 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)N18 (1p1mA)N25 because L (left) conformation "forbidden" or filtered. T0547 17 :K 1p1mA 24 :E T0547 19 :GKVCINY 1p1mA 26 :GTIKRVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26752 # 1qddA.17.20 read from T0547.t2k.many.frag # found chain 1qddA in training set Warning: unaligning (T0547)K17 (1qddA)Y21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1qddA)R22 because L (left) conformation "forbidden" or filtered. T0547 19 :GKVCINY 1qddA 23 :SYCYYFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=26753 # 2a7mA.17.157 read from T0547.t2k.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)K17 (2a7mA)V158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (2a7mA)Y165 because P (beta_P) conformation "forbidden" or filtered. T0547 18 :NGKVCI 2a7mA 159 :PGVQLL T0547 25 :Y 2a7mA 166 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=26755 # 1rgxA.17.87 read from T0547.t2k.many.frag # found chain 1rgxA in training set T0547 17 :KNGKVCINY 1rgxA 68 :REEKVCHCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26756 # 1rutX.18.108 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)K20 (1rutX)D126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)C22 (1rutX)F128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1rutX)N132 because L (left) conformation "forbidden" or filtered. T0547 18 :NG 1rutX 124 :PG T0547 21 :V 1rutX 127 :R T0547 23 :INY 1rutX 129 :HYI Number of specific fragments extracted= 3 number of extra gaps= 3 total=26759 # 1kg0C.18.26 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)N18 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1kg0C)G113 Warning: unaligning (T0547)G19 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1kg0C)G113 T0547 20 :KVCINYE 1kg0C 114 :CCFYFTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26760 # 1xiwB.18.8 read from T0547.t2k.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)N18 (1xiwB)E9 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1xiwB)N15 because E (beta_S) conformation "forbidden" or filtered. T0547 19 :GKVCI 1xiwB 10 :DRVFV T0547 25 :YE 1xiwB 16 :CN Number of specific fragments extracted= 2 number of extra gaps= 2 total=26762 # 1qwyA.18.29 read from T0547.t2k.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)K20 (1qwyA)G57 because T (delta_L) conformation "forbidden" or filtered. T0547 18 :NG 1qwyA 55 :SN T0547 21 :VCINYE 1qwyA 58 :DYHHTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26764 # 1kp6A.18.46 read from T0547.t2k.many.frag # found chain 1kp6A in training set Warning: unaligning (T0547)G19 (1kp6A)A48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1kp6A)G49 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)C22 (1kp6A)C51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1kp6A)F53 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1kp6A)D55 because P (beta_P) conformation "forbidden" or filtered. T0547 18 :N 1kp6A 47 :R T0547 21 :V 1kp6A 50 :H T0547 23 :I 1kp6A 52 :L T0547 25 :Y 1kp6A 54 :S Number of specific fragments extracted= 4 number of extra gaps= 4 total=26768 # 1onwA.18.31 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)N18 (1onwA)N32 because L (left) conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1onwA 33 :GKIIAVAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26769 # 1pg6A.18.31 read from T0547.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)N18 (1pg6A)H25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1pg6A)Q33 because P (beta_P) conformation "forbidden" or filtered. T0547 19 :GKVCINY 1pg6A 26 :GGSVYLQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=26770 # 1ypqA.18.16 read from T0547.t2k.many.frag # found chain 1ypqA in training set T0547 18 :NGKVCINYE 1ypqA 152 :GENCYLFSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26771 # 2a2cA.18.218 read from T0547.t2k.many.frag # found chain 2a2cA in training set T0547 18 :NGKVCINYE 2a2cA 199 :EGTAKLIEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26772 # 1l5aA.18.57 read from T0547.t2k.many.frag # found chain 1l5aA in template set T0547 18 :NGKVCINYE 1l5aA 58 :AQGELYWHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26773 # 2f6eA.18.17 read from T0547.t2k.many.frag # found chain 2f6eA in template set T0547 18 :NGKVCINYE 2f6eA 19 :DNKNFYFRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26774 # 1pkhA.18.60 read from T0547.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)N24 (1pkhA)V67 because E (beta_S) conformation "forbidden" or filtered. T0547 18 :NGKVCI 1pkhA 61 :IKNSIL T0547 25 :YE 1pkhA 68 :CP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26776 # 1dqgA.18.50 read from T0547.t2k.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)C22 (1dqgA)C55 because E (beta_S) conformation "forbidden" or filtered. T0547 18 :NGKV 1dqgA 51 :AFKL T0547 23 :INYE 1dqgA 56 :LGVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26778 # 1kpf.18.47 read from T0547.t2k.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)N18 (1kpf)A48 because Y (epsilon') conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1kpf 49 :PTHFLVIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26779 # 1qddA.18.21 read from T0547.t2k.many.frag # found chain 1qddA in training set T0547 18 :NGKVCINYE 1qddA 22 :RSYCYYFNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26780 # 1xodA.18.78 read from T0547.t2k.many.frag # found chain 1xodA in training set T0547 18 :NGKVCINYE 1xodA 84 :PTFHHWRIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26781 # 1rgxA.18.59 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)N18 (1rgxA)S40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1rgxA)R41 because P (beta_P) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1rgxA 42 :GKLASCP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26782 # 1cczA.18.31 read from T0547.t2k.many.frag # found chain 1cczA in training set T0547 18 :NGKVCINYE 1cczA 32 :KDKVAELEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26783 # 2bhoA.18.77 read from T0547.t2k.many.frag # found chain 2bhoA in template set T0547 18 :NGKVCINYE 2bhoA 76 :DGKPILWSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26784 # 1wv8A.18.12 read from T0547.t2k.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)E26 (1wv8A)S21 because E (beta_S) conformation "forbidden" or filtered. T0547 18 :NGKVCINY 1wv8A 13 :EAGVWVAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26785 # 1g2rA.18.32 read from T0547.t2k.many.frag # found chain 1g2rA in training set Warning: unaligning (T0547)G19 (1g2rA)E31 because G (3-10) conformation "forbidden" or filtered. T0547 18 :N 1g2rA 30 :K T0547 20 :KVCINYE 1g2rA 32 :GQVFIDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26787 # 1p1mA.18.24 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)E26 (1p1mA)Q33 because E (beta_S) conformation "forbidden" or filtered. T0547 18 :NGKVCINY 1p1mA 25 :NGTIKRVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26788 # 1x9zA.18.16 read from T0547.t2k.many.frag # found chain 1x9zA in template set Warning: unaligning (T0547)K20 (1x9zA)C446 because E (beta_S) conformation "forbidden" or filtered. T0547 18 :NG 1x9zA 444 :SD T0547 21 :VCINYE 1x9zA 447 :ALLERD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26790 # 1jiwI.18.64 read from T0547.t2k.many.frag # found chain 1jiwI in training set T0547 18 :NGKVCINYE 1jiwI 65 :PAGIALLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=26791 # 1zd7A.18.61 read from T0547.t2k.many.frag # found chain 1zd7A in training set T0547 18 :NGKVCINYE 1zd7A 62 :DGSVIRATS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26792 # 1d0qA.18.53 read from T0547.t2k.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)V21 (1d0qA)Q57 because L (left) conformation "forbidden" or filtered. T0547 18 :NGK 1d0qA 54 :PEK T0547 22 :CINYE 1d0qA 58 :IFHCF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26794 # 1u5xA.18.110 read from T0547.t2k.many.frag # found chain 1u5xA in training set T0547 18 :NGKVCINYE 1u5xA 212 :QGDIITVKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26795 # 1xrkA.18.35 read from T0547.t2k.many.frag # found chain 1xrkA in training set Warning: unaligning (T0547)G19 (1xrkA)D37 because G (3-10) conformation "forbidden" or filtered. T0547 18 :N 1xrkA 36 :D T0547 20 :KVCINYE 1xrkA 38 :FAGVVRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26797 # 1tvxA.18.46 read from T0547.t2k.many.frag # found chain 1tvxA in training set T0547 18 :NGKVCINYE 1tvxA 62 :DGRKICLDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26798 # 1vqoT.18.44 read from T0547.t2k.many.frag # found chain 1vqoT in template set Warning: unaligning (T0547)K20 (1vqoT)D46 because P (beta_P) conformation "forbidden" or filtered. T0547 18 :NG 1vqoT 44 :AG T0547 21 :VCINYE 1vqoT 47 :TVEVLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26800 # 1rutX.19.109 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)K20 (1rutX)D126 because P (beta_P) conformation "forbidden" or filtered. T0547 19 :G 1rutX 125 :G T0547 21 :VCINYEK 1rutX 127 :RFHYING Number of specific fragments extracted= 2 number of extra gaps= 1 total=26802 # 1kg0C.19.27 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)G19 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1kg0C)G113 T0547 20 :KVCINYEK 1kg0C 114 :CCFYFTKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26803 # 1xiwB.19.9 read from T0547.t2k.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)G19 (1xiwB)D10 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1xiwB)N15 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1xiwB)T18 because Y (epsilon') conformation "forbidden" or filtered. T0547 20 :KVCI 1xiwB 11 :RVFV T0547 25 :YE 1xiwB 16 :CN Number of specific fragments extracted= 2 number of extra gaps= 3 total=26805 # 1ypqA.19.17 read from T0547.t2k.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)G19 (1ypqA)E153 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1ypqA)F158 because P (beta_P) conformation "forbidden" or filtered. T0547 20 :KVCI 1ypqA 154 :NCYL T0547 25 :YEK 1ypqA 159 :SSG Number of specific fragments extracted= 2 number of extra gaps= 2 total=26807 # 1onwA.19.32 read from T0547.t2k.many.frag # found chain 1onwA in training set T0547 19 :GKVCINYEK 1onwA 33 :GKIIAVASN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26808 # 1pg6A.19.32 read from T0547.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)E26 (1pg6A)Q33 because P (beta_P) conformation "forbidden" or filtered. T0547 19 :GKVCINY 1pg6A 26 :GGSVYLQ T0547 27 :K 1pg6A 34 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=26810 # 2f6eA.19.18 read from T0547.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)E26 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (2f6eA)G28 because T (delta_L) conformation "forbidden" or filtered. T0547 19 :GKVCINY 2f6eA 20 :NKNFYFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=26811 # 2a2cA.19.219 read from T0547.t2k.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)E26 (2a2cA)F207 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (2a2cA)S208 because L (left) conformation "forbidden" or filtered. T0547 19 :GKVCINY 2a2cA 200 :GTAKLIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26812 # 1kp6A.19.47 read from T0547.t2k.many.frag # found chain 1kp6A in training set Warning: unaligning (T0547)N24 (1kp6A)F53 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1kp6A)D55 because P (beta_P) conformation "forbidden" or filtered. T0547 19 :GKVCI 1kp6A 48 :AGHCL T0547 25 :Y 1kp6A 54 :S T0547 27 :K 1kp6A 56 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=26815 # 1l5aA.19.58 read from T0547.t2k.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)K20 (1l5aA)G60 because T (delta_L) conformation "forbidden" or filtered. T0547 19 :G 1l5aA 59 :Q T0547 21 :VCINYEK 1l5aA 61 :ELYWHPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26817 # 1qwyA.19.30 read from T0547.t2k.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)K20 (1qwyA)G57 because T (delta_L) conformation "forbidden" or filtered. T0547 19 :G 1qwyA 56 :N T0547 21 :VCINYEK 1qwyA 58 :DYHHTPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26819 # 1xodA.19.79 read from T0547.t2k.many.frag # found chain 1xodA in training set Warning: unaligning (T0547)E26 (1xodA)G92 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1xodA)D93 because G (3-10) conformation "forbidden" or filtered. T0547 19 :GKVCINY 1xodA 85 :TFHHWRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26820 # 1pkhA.19.61 read from T0547.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)K20 (1pkhA)N63 because G (3-10) conformation "forbidden" or filtered. T0547 19 :G 1pkhA 62 :K T0547 21 :VCINYEK 1pkhA 64 :SILVCPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26822 # 1x9zA.19.17 read from T0547.t2k.many.frag # found chain 1x9zA in template set Warning: unaligning (T0547)K20 (1x9zA)C446 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1x9zA)G453 because T (delta_L) conformation "forbidden" or filtered. T0547 19 :G 1x9zA 445 :D T0547 21 :VCINYE 1x9zA 447 :ALLERD Number of specific fragments extracted= 2 number of extra gaps= 2 total=26824 # 1cczA.19.32 read from T0547.t2k.many.frag # found chain 1cczA in training set Warning: unaligning (T0547)G19 (1cczA)D33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1cczA)N40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1cczA)S41 because T (delta_L) conformation "forbidden" or filtered. T0547 20 :KVCINY 1cczA 34 :KVAELE Number of specific fragments extracted= 1 number of extra gaps= 2 total=26825 # 1kpf.19.48 read from T0547.t2k.many.frag # found chain 1kpf in training set T0547 19 :GKVCINYEK 1kpf 49 :PTHFLVIPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26826 # 1qddA.19.22 read from T0547.t2k.many.frag # found chain 1qddA in training set Warning: unaligning (T0547)N24 (1qddA)F28 because P (beta_P) conformation "forbidden" or filtered. T0547 19 :GKVCI 1qddA 23 :SYCYY T0547 25 :YEK 1qddA 29 :NED Number of specific fragments extracted= 2 number of extra gaps= 1 total=26828 # 2a7mA.19.159 read from T0547.t2k.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)N24 (2a7mA)Y165 because P (beta_P) conformation "forbidden" or filtered. T0547 19 :GKVCI 2a7mA 160 :GVQLL T0547 25 :YEK 2a7mA 166 :TPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26830 # 1xrkA.19.36 read from T0547.t2k.many.frag # found chain 1xrkA in training set Warning: unaligning (T0547)K20 (1xrkA)F38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V21 (1xrkA)A39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1xrkA)V42 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1xrkA)D44 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1xrkA)D45 because G (3-10) conformation "forbidden" or filtered. T0547 19 :G 1xrkA 37 :D T0547 22 :CI 1xrkA 40 :GV T0547 25 :Y 1xrkA 43 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=26833 # 1p1mA.19.25 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)K20 (1p1mA)T27 because E (beta_S) conformation "forbidden" or filtered. T0547 19 :G 1p1mA 26 :G T0547 21 :VCINYEK 1p1mA 28 :IKRVLQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26835 # 1jiwI.19.65 read from T0547.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)K20 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 19 :G 1jiwI 66 :A T0547 21 :VCINYEK 1jiwI 68 :IALLERG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26837 # 1dqgA.19.51 read from T0547.t2k.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G19 (1dqgA)F52 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1dqgA)G57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1dqgA)S60 because Y (epsilon') conformation "forbidden" or filtered. T0547 20 :KVCI 1dqgA 53 :KLCL T0547 25 :YE 1dqgA 58 :VP Number of specific fragments extracted= 2 number of extra gaps= 3 total=26839 # 1rgxA.19.60 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)K20 (1rgxA)G42 because S (epsilon) conformation "forbidden" or filtered. T0547 19 :G 1rgxA 41 :R T0547 21 :VCINYEK 1rgxA 43 :KLASCPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26841 # 1vqoT.19.45 read from T0547.t2k.many.frag # found chain 1vqoT in template set Warning: unaligning (T0547)G19 (1vqoT)G45 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1vqoT)D46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1vqoT)G53 because P (beta_P) conformation "forbidden" or filtered. T0547 21 :VCINYE 1vqoT 47 :TVEVLR Number of specific fragments extracted= 1 number of extra gaps= 2 total=26842 # 1zd7A.19.62 read from T0547.t2k.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)K27 (1zd7A)D71 because G (3-10) conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1zd7A 63 :GSVIRATS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26843 # 2bhoA.19.78 read from T0547.t2k.many.frag # found chain 2bhoA in template set Warning: unaligning (T0547)K27 (2bhoA)Q85 because Y (epsilon') conformation "forbidden" or filtered. T0547 19 :GKVCINYE 2bhoA 77 :GKPILWSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=26844 # 1rgxA.19.89 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)C22 (1rgxA)C73 because P (beta_P) conformation "forbidden" or filtered. T0547 19 :GKV 1rgxA 70 :EKV T0547 23 :INYEK 1rgxA 74 :HCQCA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26846 1s7mA expands to /projects/compbio/data/pdb/1s7m.pdb.gz 1s7mA:# 1s7mA.19.15 read from T0547.t2k.many.frag # adding 1s7mA to template set # found chain 1s7mA in template set T0547 19 :GKVCINYEK 1s7mA 556 :DGLTITPAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26847 # 1u5xA.19.111 read from T0547.t2k.many.frag # found chain 1u5xA in training set T0547 19 :GKVCINYEK 1u5xA 213 :GDIITVKIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26848 # 1tvxA.19.47 read from T0547.t2k.many.frag # found chain 1tvxA in training set Warning: unaligning (T0547)N24 (1tvxA)L68 because E (beta_S) conformation "forbidden" or filtered. T0547 19 :GKVCI 1tvxA 63 :GRKIC T0547 25 :YEK 1tvxA 69 :DPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26850 # 1kg0C.20.28 read from T0547.t2k.many.frag # found chain 1kg0C in template set T0547 20 :KVCINYEKK 1kg0C 114 :CCFYFTKKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26851 # 1rutX.20.110 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)C22 (1rutX)F128 because Y (epsilon') conformation "forbidden" or filtered. T0547 20 :KV 1rutX 126 :DR T0547 23 :INYEKK 1rutX 129 :HYINGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26853 # 1ypqA.20.18 read from T0547.t2k.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)K27 (1ypqA)G161 because Y (epsilon') conformation "forbidden" or filtered. T0547 20 :KVCINYE 1ypqA 154 :NCYLFSS T0547 28 :K 1ypqA 162 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=26855 # 1xiwB.20.10 read from T0547.t2k.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)K20 (1xiwB)R11 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1xiwB)N15 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1xiwB)T18 because Y (epsilon') conformation "forbidden" or filtered. T0547 21 :VCI 1xiwB 12 :VFV T0547 25 :YE 1xiwB 16 :CN T0547 28 :K 1xiwB 19 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=26858 # 1onwA.20.33 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)K27 (1onwA)N41 because L (left) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1onwA 34 :KIIAVAS T0547 28 :K 1onwA 42 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=26860 # 2f6eA.20.19 read from T0547.t2k.many.frag # found chain 2f6eA in template set T0547 20 :KVCINYEKK 2f6eA 21 :KNFYFRNGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26861 # 1kp6A.20.48 read from T0547.t2k.many.frag # found chain 1kp6A in training set Warning: unaligning (T0547)K20 (1kp6A)G49 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)C22 (1kp6A)C51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1kp6A)F53 because Y (epsilon') conformation "forbidden" or filtered. T0547 21 :V 1kp6A 50 :H T0547 23 :I 1kp6A 52 :L T0547 25 :YEKK 1kp6A 54 :SDDL Number of specific fragments extracted= 3 number of extra gaps= 3 total=26864 # 2a2cA.20.220 read from T0547.t2k.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)N24 (2a2cA)I205 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (2a2cA)S208 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (2a2cA)P209 because C (cis) conformation "forbidden" or filtered. T0547 20 :KVCI 2a2cA 201 :TAKL T0547 25 :YE 2a2cA 206 :EF Number of specific fragments extracted= 2 number of extra gaps= 2 total=26866 # 2a7mA.20.160 read from T0547.t2k.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)N24 (2a7mA)Y165 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (2a7mA)G168 because T (delta_L) conformation "forbidden" or filtered. T0547 20 :KVCI 2a7mA 161 :VQLL T0547 25 :YE 2a7mA 166 :TP T0547 28 :K 2a7mA 169 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=26869 # 1pg6A.20.33 read from T0547.t2k.many.frag # found chain 1pg6A in training set T0547 20 :KVCINYEKK 1pg6A 27 :GSVYLQQGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26870 # 1l5aA.20.59 read from T0547.t2k.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)K20 (1l5aA)G60 because T (delta_L) conformation "forbidden" or filtered. T0547 21 :VCINYEKK 1l5aA 61 :ELYWHPFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26871 # 1x9zA.20.18 read from T0547.t2k.many.frag # found chain 1x9zA in template set T0547 20 :KVCINYEKK 1x9zA 446 :CALLERDGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26872 # 1qwyA.20.31 read from T0547.t2k.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)K27 (1qwyA)D64 because G (3-10) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1qwyA 57 :GDYHHTP T0547 28 :K 1qwyA 65 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=26874 # 1xodA.20.80 read from T0547.t2k.many.frag # found chain 1xodA in training set T0547 20 :KVCINYEKK 1xodA 86 :FHHWRIGDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26875 # 1dqgA.20.52 read from T0547.t2k.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)N24 (1dqgA)G57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1dqgA)S60 because Y (epsilon') conformation "forbidden" or filtered. T0547 20 :KVCI 1dqgA 53 :KLCL T0547 25 :YE 1dqgA 58 :VP T0547 28 :K 1dqgA 61 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=26878 # 1pkhA.20.62 read from T0547.t2k.many.frag # found chain 1pkhA in training set T0547 20 :KVCINYEKK 1pkhA 63 :NSILVCPLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26879 # 1qddA.20.23 read from T0547.t2k.many.frag # found chain 1qddA in training set T0547 20 :KVCINYEKK 1qddA 24 :YCYYFNEDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26880 # 1kpf.20.49 read from T0547.t2k.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)E26 (1kpf)P56 because P (beta_P) conformation "forbidden" or filtered. T0547 20 :KVCINY 1kpf 50 :THFLVI T0547 27 :KK 1kpf 57 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26882 # 1s7mA.20.16 read from T0547.t2k.many.frag # found chain 1s7mA in template set Warning: unaligning (T0547)K20 (1s7mA)G557 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1s7mA)G565 because S (epsilon) conformation "forbidden" or filtered. T0547 21 :VCINYEK 1s7mA 558 :LTITPAN Number of specific fragments extracted= 1 number of extra gaps= 2 total=26883 # 1xrkA.20.37 read from T0547.t2k.many.frag # found chain 1xrkA in training set Warning: unaligning (T0547)K20 (1xrkA)F38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1xrkA)D44 because S (epsilon) conformation "forbidden" or filtered. T0547 21 :VCINY 1xrkA 39 :AGVVR T0547 27 :KK 1xrkA 45 :DV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26885 1yr4B expands to /projects/compbio/data/pdb/1yr4.pdb.gz 1yr4B:Skipped atom 3699, because occupancy 0.350 <= existing 0.650 in 1yr4B Skipped atom 3701, because occupancy 0.350 <= existing 0.650 in 1yr4B # 1yr4B.20.14 read from T0547.t2k.many.frag # adding 1yr4B to template set # found chain 1yr4B in template set Warning: unaligning (T0547)K20 (1yr4B)N2015 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1yr4B)G2023 because T (delta_L) conformation "forbidden" or filtered. T0547 21 :VCINYEK 1yr4B 2016 :TCNCTPT Number of specific fragments extracted= 1 number of extra gaps= 2 total=26886 # 1rgxA.20.61 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)K20 (1rgxA)G42 because S (epsilon) conformation "forbidden" or filtered. T0547 21 :VCINYEKK 1rgxA 43 :KLASCPEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=26887 # 1cczA.20.33 read from T0547.t2k.many.frag # found chain 1cczA in training set Warning: unaligning (T0547)I23 (1cczA)E37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1cczA)N40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1cczA)S41 because T (delta_L) conformation "forbidden" or filtered. T0547 20 :KVC 1cczA 34 :KVA T0547 24 :NY 1cczA 38 :LE T0547 28 :K 1cczA 42 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=26890 # 1p1mA.20.26 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)K27 (1p1mA)G34 because S (epsilon) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1p1mA 27 :TIKRVLQ T0547 28 :K 1p1mA 35 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=26892 # 1jiwI.20.66 read from T0547.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)K20 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 21 :VCINYEKK 1jiwI 68 :IALLERGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=26893 # 1zd7A.20.63 read from T0547.t2k.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)N24 (1zd7A)A68 because Y (epsilon') conformation "forbidden" or filtered. T0547 20 :KVCI 1zd7A 64 :SVIR T0547 25 :YEKK 1zd7A 69 :TSDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26895 # 1d0qA.20.55 read from T0547.t2k.many.frag # found chain 1d0qA in training set T0547 20 :KVCINYEKK 1d0qA 56 :KQIFHCFGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26896 # 1tvxA.20.48 read from T0547.t2k.many.frag # found chain 1tvxA in training set Warning: unaligning (T0547)N24 (1tvxA)L68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1tvxA)A72 because P (beta_P) conformation "forbidden" or filtered. T0547 20 :KVCI 1tvxA 64 :RKIC T0547 25 :YEK 1tvxA 69 :DPD Number of specific fragments extracted= 2 number of extra gaps= 2 total=26898 # 1lktA.20.65 read from T0547.t2k.many.frag # found chain 1lktA in template set Warning: unaligning (T0547)K20 (1lktA)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y25 (1lktA)N76 because L (left) conformation "forbidden" or filtered. T0547 21 :VCIN 1lktA 72 :KIVY T0547 26 :EKK 1lktA 77 :GQL Number of specific fragments extracted= 2 number of extra gaps= 2 total=26900 # 1wv8A.20.14 read from T0547.t2k.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)K28 (1wv8A)D23 because G (3-10) conformation "forbidden" or filtered. T0547 20 :KVCINYEK 1wv8A 15 :GVWVAESD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26901 # 1kg0C.21.29 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)N24 (1kg0C)F118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1kg0C)K121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. T0547 21 :VCI 1kg0C 115 :CFY T0547 25 :YE 1kg0C 119 :TK T0547 28 :K 1kg0C 122 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=26904 # 1rutX.21.111 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)E26 (1rutX)N132 because L (left) conformation "forbidden" or filtered. T0547 21 :VCINY 1rutX 127 :RFHYI T0547 27 :KKP 1rutX 133 :GSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26906 # 1ypqA.21.19 read from T0547.t2k.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)K27 (1ypqA)G161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 21 :VCINYE 1ypqA 155 :CYLFSS T0547 28 :K 1ypqA 162 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=26908 # 1xiwB.21.11 read from T0547.t2k.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)N24 (1xiwB)N15 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1xiwB)T18 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1xiwB)S19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1xiwB)I20 because D (zeta) conformation "forbidden" or filtered. T0547 21 :VCI 1xiwB 12 :VFV T0547 25 :YE 1xiwB 16 :CN Number of specific fragments extracted= 2 number of extra gaps= 2 total=26910 # 2a2cA.21.221 read from T0547.t2k.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K27 (2a2cA)S208 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (2a2cA)P209 because C (cis) conformation "forbidden" or filtered. T0547 21 :VCINYE 2a2cA 202 :AKLIEF T0547 29 :P 2a2cA 210 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=26912 # 1pg6A.21.34 read from T0547.t2k.many.frag # found chain 1pg6A in training set T0547 21 :VCINYEKKP 1pg6A 28 :SVYLQQGSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26913 # 2f6eA.21.20 read from T0547.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)E26 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (2f6eA)L29 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINY 2f6eA 22 :NFYFR T0547 27 :K 2f6eA 28 :G T0547 29 :P 2f6eA 30 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=26916 # 1onwA.21.34 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)K27 (1onwA)N41 because L (left) conformation "forbidden" or filtered. T0547 21 :VCINYE 1onwA 35 :IIAVAS T0547 28 :KP 1onwA 42 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26918 # 7odcA.21.9 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N24 (7odcA)I13 because P (beta_P) conformation "forbidden" or filtered. T0547 21 :VCI 7odcA 10 :DCH T0547 25 :YEKKP 7odcA 14 :LDEGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26920 # 1rgxA.21.62 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)V21 (1rgxA)K43 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1rgxA)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rgxA)T51 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINYEK 1rgxA 44 :LASCPE Number of specific fragments extracted= 1 number of extra gaps= 2 total=26921 # 1l5aA.21.60 read from T0547.t2k.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)N24 (1l5aA)W64 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCI 1l5aA 61 :ELY T0547 25 :YEKKP 1l5aA 65 :HPFSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26923 # 1qwyA.21.32 read from T0547.t2k.many.frag # found chain 1qwyA in training set T0547 21 :VCINYEKKP 1qwyA 58 :DYHHTPDGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26924 # 1kp6A.21.49 read from T0547.t2k.many.frag # found chain 1kp6A in training set Warning: unaligning (T0547)N24 (1kp6A)F53 because Y (epsilon') conformation "forbidden" or filtered. T0547 21 :VCI 1kp6A 50 :HCL T0547 25 :YEKKP 1kp6A 54 :SDDLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26926 # 2a7mA.21.161 read from T0547.t2k.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)K27 (2a7mA)G168 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2a7mA)S170 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINYE 2a7mA 162 :QLLYTP T0547 28 :K 2a7mA 169 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=26928 # 1tvxA.21.49 read from T0547.t2k.many.frag # found chain 1tvxA in training set T0547 21 :VCINYEKKP 1tvxA 65 :KICLDPDAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26929 # 1yr4B.21.15 read from T0547.t2k.many.frag # found chain 1yr4B in template set Warning: unaligning (T0547)C22 (1yr4B)C2017 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1yr4B)C2019 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1yr4B)V2024 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :V 1yr4B 2016 :T T0547 23 :I 1yr4B 2018 :N T0547 25 :YEKK 1yr4B 2020 :TPTG Number of specific fragments extracted= 3 number of extra gaps= 3 total=26932 1regX expands to /projects/compbio/data/pdb/1reg.pdb.gz 1regX:# 1regX.21.36 read from T0547.t2k.many.frag # adding 1regX to template set # found chain 1regX in template set Warning: unaligning (T0547)E26 (1regX)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1regX)Y45 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINY 1regX 37 :HILQK T0547 27 :KK 1regX 43 :GL Number of specific fragments extracted= 2 number of extra gaps= 2 total=26934 # 1cczA.21.34 read from T0547.t2k.many.frag # found chain 1cczA in training set Warning: unaligning (T0547)P29 (1cczA)F43 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINYEKK 1cczA 35 :VAELENSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26935 # 1pkhA.21.63 read from T0547.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)E26 (1pkhA)P69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1pkhA)L70 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1pkhA)N71 because L (left) conformation "forbidden" or filtered. T0547 21 :VCINY 1pkhA 64 :SILVC T0547 29 :P 1pkhA 72 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=26937 # 1xodA.21.81 read from T0547.t2k.many.frag # found chain 1xodA in training set Warning: unaligning (T0547)K28 (1xodA)K94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1xodA)K95 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINYEK 1xodA 87 :HHWRIGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26938 # 1x9zA.21.19 read from T0547.t2k.many.frag # found chain 1x9zA in template set Warning: unaligning (T0547)P29 (1x9zA)I455 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINYEKK 1x9zA 447 :ALLERDGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=26939 # 1nwaA.21.75 read from T0547.t2k.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P29 (1nwaA)T63 because Y (epsilon') conformation "forbidden" or filtered. T0547 21 :VCINYEKK 1nwaA 55 :EIIFDPTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=26940 # 1kpf.21.50 read from T0547.t2k.many.frag # found chain 1kpf in training set T0547 21 :VCINYEKKP 1kpf 51 :HFLVIPKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26941 # 1s7mA.21.17 read from T0547.t2k.many.frag # found chain 1s7mA in template set Warning: unaligning (T0547)N24 (1s7mA)T561 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCI 1s7mA 558 :LTI T0547 25 :YEKKP 1s7mA 562 :PANGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26943 # 1qddA.21.24 read from T0547.t2k.many.frag # found chain 1qddA in training set Warning: unaligning (T0547)P29 (1qddA)E33 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINYEKK 1qddA 25 :CYYFNEDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=26944 # 1xrkA.21.38 read from T0547.t2k.many.frag # found chain 1xrkA in training set Warning: unaligning (T0547)P29 (1xrkA)T47 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINYEKK 1xrkA 39 :AGVVRDDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=26945 1u0fA expands to /projects/compbio/data/pdb/1u0f.pdb.gz 1u0fA:Skipped atom 610, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 714, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 873, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 1443, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 1445, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 1837, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 1839, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 1841, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 1843, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 1845, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 1939, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 1941, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 2379, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 3495, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 3497, because occupancy 0.500 <= existing 0.500 in 1u0fA Skipped atom 3499, because occupancy 0.500 <= existing 0.500 in 1u0fA # 1u0fA.21.49 read from T0547.t2k.many.frag # adding 1u0fA to template set # found chain 1u0fA in template set Warning: unaligning (T0547)P29 (1u0fA)N57 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINYEKK 1u0fA 49 :HILVDYSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26946 # 1jiwI.21.67 read from T0547.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)K28 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 21 :VCINYEK 1jiwI 68 :IALLERG T0547 29 :P 1jiwI 76 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=26948 # 1p1mA.21.27 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)I23 (1p1mA)R30 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1p1mA)E35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1p1mA)V36 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VC 1p1mA 28 :IK T0547 24 :NYEK 1p1mA 31 :VLQG Number of specific fragments extracted= 2 number of extra gaps= 2 total=26950 # 1d0qA.21.56 read from T0547.t2k.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)V21 (1d0qA)Q57 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1d0qA)G63 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1d0qA)G65 because T (delta_L) conformation "forbidden" or filtered. T0547 22 :CINYE 1d0qA 58 :IFHCF T0547 28 :K 1d0qA 64 :C Number of specific fragments extracted= 2 number of extra gaps= 3 total=26952 # 1kg0C.22.30 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)K28 (1kg0C)K122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. T0547 22 :CINYEK 1kg0C 116 :FYFTKK T0547 30 :A 1kg0C 124 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=26954 # 1rutX.22.112 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)N24 (1rutX)Y130 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1rutX)N132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1rutX)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 22 :CI 1rutX 128 :FH T0547 25 :Y 1rutX 131 :I T0547 28 :KPA 1rutX 134 :SLF Number of specific fragments extracted= 3 number of extra gaps= 2 total=26957 # 1ypqA.22.20 read from T0547.t2k.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)K27 (1ypqA)G161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 22 :CINYE 1ypqA 156 :YLFSS T0547 28 :K 1ypqA 162 :S T0547 30 :A 1ypqA 164 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=26960 # 7odcA.22.10 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A30 (7odcA)T19 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINYEKKP 7odcA 11 :CHILDEGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=26961 # 2a2cA.22.222 read from T0547.t2k.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K27 (2a2cA)S208 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (2a2cA)P209 because C (cis) conformation "forbidden" or filtered. T0547 22 :CINYE 2a2cA 203 :KLIEF T0547 29 :PA 2a2cA 210 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26963 # 1xiwB.22.12 read from T0547.t2k.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)P29 (1xiwB)I20 because D (zeta) conformation "forbidden" or filtered. T0547 22 :CINYEKK 1xiwB 13 :FVNCNTS T0547 30 :A 1xiwB 21 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=26965 # 1rgxA.22.63 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)K28 (1rgxA)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rgxA)T51 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINYEK 1rgxA 44 :LASCPE T0547 30 :A 1rgxA 52 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=26967 # 1regX.22.37 read from T0547.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0547)N24 (1regX)Q40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1regX)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1regX)Y45 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CI 1regX 38 :IL T0547 25 :Y 1regX 41 :K T0547 27 :KK 1regX 43 :GL T0547 30 :A 1regX 46 :Y Number of specific fragments extracted= 4 number of extra gaps= 3 total=26971 # 1nwaA.22.76 read from T0547.t2k.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P29 (1nwaA)T63 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1nwaA)D64 because Y (epsilon') conformation "forbidden" or filtered. T0547 22 :CINYEKK 1nwaA 56 :IIFDPTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=26972 # 2f6eA.22.21 read from T0547.t2k.many.frag # found chain 2f6eA in template set T0547 22 :CINYEKKPA 2f6eA 23 :FYFRNGLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26973 # 1tvxA.22.50 read from T0547.t2k.many.frag # found chain 1tvxA in training set Warning: unaligning (T0547)K28 (1tvxA)A72 because P (beta_P) conformation "forbidden" or filtered. T0547 22 :CINYEK 1tvxA 66 :ICLDPD T0547 29 :PA 1tvxA 73 :PR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26975 1j2zA expands to /projects/compbio/data/pdb/1j2z.pdb.gz 1j2zA:# 1j2zA.22.180 read from T0547.t2k.many.frag # adding 1j2zA to template set # found chain 1j2zA in template set Warning: unaligning (T0547)Y25 (1j2zA)E184 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1j2zA)G185 because S (epsilon) conformation "forbidden" or filtered. T0547 22 :CIN 1j2zA 181 :CTV T0547 27 :KKPA 1j2zA 186 :NRAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26977 2c5lC expands to /projects/compbio/data/pdb/2c5l.pdb.gz 2c5lC:Skipped atom 2878, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 2879, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 2880, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 2881, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 2882, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3011, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3012, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3013, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3114, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3115, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3116, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3117, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3118, because occupancy 0.500 <= existing 0.500 in 2c5lC # 2c5lC.22.22 read from T0547.t2k.many.frag # adding 2c5lC to template set # found chain 2c5lC in template set T0547 22 :CINYEKKPA 2c5lC 2152 :VIKAPRVST Number of specific fragments extracted= 1 number of extra gaps= 0 total=26978 # 1onwA.22.35 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)Y25 (1onwA)A39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1onwA)N41 because L (left) conformation "forbidden" or filtered. T0547 22 :CIN 1onwA 36 :IAV T0547 26 :E 1onwA 40 :S T0547 28 :KPA 1onwA 42 :IPS Number of specific fragments extracted= 3 number of extra gaps= 2 total=26981 # 1u0fA.22.50 read from T0547.t2k.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)P29 (1u0fA)N57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1u0fA)L58 because N (gamma') conformation "forbidden" or filtered. T0547 22 :CINYEKK 1u0fA 50 :ILVDYSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26982 # 1l5aA.22.61 read from T0547.t2k.many.frag # found chain 1l5aA in template set T0547 22 :CINYEKKPA 1l5aA 62 :LYWHPFSPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26983 # 1cczA.22.35 read from T0547.t2k.many.frag # found chain 1cczA in training set Warning: unaligning (T0547)E26 (1cczA)N40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1cczA)S41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1cczA)E42 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1cczA)F43 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINY 1cczA 36 :AELE T0547 30 :A 1cczA 44 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=26985 # 1qddA.22.25 read from T0547.t2k.many.frag # found chain 1qddA in training set Warning: unaligning (T0547)N24 (1qddA)F28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1qddA)E33 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CI 1qddA 26 :YY T0547 25 :YEKK 1qddA 29 :NEDR T0547 30 :A 1qddA 34 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=26988 # 1jiwI.22.68 read from T0547.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)K28 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 22 :CINYEK 1jiwI 69 :ALLERG T0547 29 :PA 1jiwI 76 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26990 # 1qwyA.22.33 read from T0547.t2k.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)K28 (1qwyA)G65 because T (delta_L) conformation "forbidden" or filtered. T0547 22 :CINYEK 1qwyA 59 :YHHTPD T0547 29 :PA 1qwyA 66 :NW Number of specific fragments extracted= 2 number of extra gaps= 1 total=26992 # 1pkhA.22.64 read from T0547.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)E26 (1pkhA)P69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1pkhA)N71 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1pkhA)N73 because L (left) conformation "forbidden" or filtered. T0547 22 :CINY 1pkhA 65 :ILVC T0547 27 :K 1pkhA 70 :L T0547 29 :P 1pkhA 72 :Y Number of specific fragments extracted= 3 number of extra gaps= 3 total=26995 # 1yr4B.22.16 read from T0547.t2k.many.frag # found chain 1yr4B in template set Warning: unaligning (T0547)N24 (1yr4B)C2019 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1yr4B)T2022 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1yr4B)G2023 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1yr4B)V2024 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CI 1yr4B 2017 :CN T0547 25 :YE 1yr4B 2020 :TP T0547 30 :A 1yr4B 2025 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=26998 # 1p1mA.22.28 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)K27 (1p1mA)G34 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1p1mA)V36 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINYE 1p1mA 29 :KRVLQ T0547 28 :K 1p1mA 35 :E T0547 30 :A 1p1mA 37 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=27001 # 1pg6A.22.35 read from T0547.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)K27 (1pg6A)G34 because T (delta_L) conformation "forbidden" or filtered. T0547 22 :CINYE 1pg6A 29 :VYLQQ T0547 28 :KPA 1pg6A 35 :SMV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27003 # 1kr4A.22.59 read from T0547.t2k.many.frag # found chain 1kr4A in training set Warning: unaligning (T0547)N24 (1kr4A)W46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1kr4A)K48 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1kr4A)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CI 1kr4A 44 :GY T0547 25 :Y 1kr4A 47 :W T0547 27 :KKP 1kr4A 49 :GEI Number of specific fragments extracted= 3 number of extra gaps= 3 total=27006 1y60A expands to /projects/compbio/data/pdb/1y60.pdb.gz 1y60A:Skipped atom 1082, because occupancy 0.500 <= existing 0.500 in 1y60A Skipped atom 1084, because occupancy 0.500 <= existing 0.500 in 1y60A Skipped atom 1086, because occupancy 0.500 <= existing 0.500 in 1y60A Skipped atom 1088, because occupancy 0.500 <= existing 0.500 in 1y60A Skipped atom 1090, because occupancy 0.500 <= existing 0.500 in 1y60A Skipped atom 1092, because occupancy 0.500 <= existing 0.500 in 1y60A Skipped atom 1094, because occupancy 0.500 <= existing 0.500 in 1y60A # 1y60A.22.23 read from T0547.t2k.many.frag # adding 1y60A to template set # found chain 1y60A in template set Warning: unaligning (T0547)E26 (1y60A)P29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1y60A)R30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1y60A)S32 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINY 1y60A 25 :LIIG T0547 28 :K 1y60A 31 :G T0547 30 :A 1y60A 33 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=27009 1z53A expands to /projects/compbio/data/pdb/1z53.pdb.gz 1z53A:Skipped atom 604, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 606, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 608, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 610, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 612, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 614, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 616, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 618, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 620, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 622, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 624, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 626, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 628, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 630, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 632, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 634, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 636, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 638, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 640, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 642, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 644, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 646, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 648, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 650, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 652, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 654, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 656, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 999, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1001, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1003, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1005, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1007, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1208, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1210, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1212, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1214, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1216, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1362, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1364, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1366, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1368, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1370, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1372, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1374, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1416, because occupancy 0.300 <= existing 0.300 in 1z53A Skipped atom 1417, because occupancy 0.300 <= existing 0.300 in 1z53A Skipped atom 1419, because occupancy 0.300 <= existing 0.300 in 1z53A Skipped atom 1420, because occupancy 0.300 <= existing 0.300 in 1z53A Skipped atom 1422, because occupancy 0.300 <= existing 0.300 in 1z53A Skipped atom 1423, because occupancy 0.300 <= existing 0.300 in 1z53A Skipped atom 1425, because occupancy 0.300 <= existing 0.300 in 1z53A Skipped atom 1426, because occupancy 0.300 <= existing 0.300 in 1z53A Skipped atom 1580, because occupancy 0.400 <= existing 0.400 in 1z53A Skipped atom 1912, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1914, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 1916, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 2077, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 2079, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 2081, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 2083, because occupancy 0.500 <= existing 0.500 in 1z53A Skipped atom 2085, because occupancy 0.500 <= existing 0.500 in 1z53A # 1z53A.22.221 read from T0547.t2k.many.frag # adding 1z53A to template set # found chain 1z53A in template set Warning: unaligning (T0547)P29 (1z53A)Y229 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINYEKK 1z53A 222 :QWDSKSG T0547 30 :A 1z53A 230 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=27011 # 1rutX.22.48 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)K27 (1rutX)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rutX)I71 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINYE 1rutX 64 :SYTKS T0547 28 :K 1rutX 70 :M T0547 30 :A 1rutX 72 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=27014 # 2a7mA.22.162 read from T0547.t2k.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)N24 (2a7mA)Y165 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (2a7mA)G168 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2a7mA)S170 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CI 2a7mA 163 :LL T0547 25 :YE 2a7mA 166 :TP T0547 28 :K 2a7mA 169 :H T0547 30 :A 2a7mA 171 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=27018 # 1t6cA.22.28 read from T0547.t2k.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)E26 (1t6cA)D30 because L (left) conformation "forbidden" or filtered. T0547 22 :CINY 1t6cA 26 :AQIK T0547 27 :KKPA 1t6cA 31 :GKLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27020 # 1kg0C.23.31 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1kg0C)T124 because P (beta_P) conformation "forbidden" or filtered. T0547 23 :INYEKK 1kg0C 117 :YFTKKK T0547 31 :I 1kg0C 125 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=27022 # 7odcA.23.11 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 23 :INYEKKPAI 7odcA 12 :HILDEGFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27023 # 1ypqA.23.21 read from T0547.t2k.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 23 :INYEKK 1ypqA 157 :LFSSGS T0547 30 :AI 1ypqA 164 :NW Number of specific fragments extracted= 2 number of extra gaps= 1 total=27025 # 1regX.23.38 read from T0547.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0547)E26 (1regX)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1regX)G43 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1regX)Y45 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INY 1regX 39 :LQK T0547 28 :K 1regX 44 :L T0547 30 :AI 1regX 46 :YI Number of specific fragments extracted= 3 number of extra gaps= 2 total=27028 # 1rutX.23.113 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)N24 (1rutX)Y130 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :I 1rutX 129 :H T0547 25 :YEKKPAI 1rutX 131 :INGSLFC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27030 # 1rgxA.23.64 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)K27 (1rgxA)E49 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rgxA)T51 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYE 1rgxA 45 :ASCP T0547 28 :K 1rgxA 50 :G T0547 30 :AI 1rgxA 52 :AV Number of specific fragments extracted= 3 number of extra gaps= 2 total=27033 # 1nwaA.23.77 read from T0547.t2k.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P29 (1nwaA)T63 because Y (epsilon') conformation "forbidden" or filtered. T0547 23 :INYEKK 1nwaA 57 :IFDPTV T0547 30 :AI 1nwaA 64 :DY Number of specific fragments extracted= 2 number of extra gaps= 1 total=27035 # 2a2cA.23.223 read from T0547.t2k.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K28 (2a2cA)P209 because C (cis) conformation "forbidden" or filtered. T0547 23 :INYEK 2a2cA 204 :LIEFS T0547 29 :PAI 2a2cA 210 :LRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27037 # 1xiwB.23.13 read from T0547.t2k.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)K27 (1xiwB)T18 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1xiwB)I20 because D (zeta) conformation "forbidden" or filtered. T0547 23 :INYE 1xiwB 14 :VNCN T0547 28 :K 1xiwB 19 :S T0547 30 :AI 1xiwB 21 :TW Number of specific fragments extracted= 3 number of extra gaps= 2 total=27040 # 2c5lC.23.23 read from T0547.t2k.many.frag # found chain 2c5lC in template set T0547 23 :INYEKKPAI 2c5lC 2153 :IKAPRVSTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27041 # 1j2zA.23.181 read from T0547.t2k.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)Y25 (1j2zA)E184 because Y (epsilon') conformation "forbidden" or filtered. T0547 23 :IN 1j2zA 182 :TV T0547 26 :EKKPAI 1j2zA 185 :GNRAFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27043 # 2f6eA.23.22 read from T0547.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)E26 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (2f6eA)G28 because T (delta_L) conformation "forbidden" or filtered. T0547 23 :INY 2f6eA 24 :YFR T0547 28 :KPAI 2f6eA 29 :LPQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27045 # 1tvxA.23.51 read from T0547.t2k.many.frag # found chain 1tvxA in training set Warning: unaligning (T0547)K28 (1tvxA)A72 because P (beta_P) conformation "forbidden" or filtered. T0547 23 :INYEK 1tvxA 67 :CLDPD T0547 29 :PAI 1tvxA 73 :PRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27047 # 1qddA.23.26 read from T0547.t2k.many.frag # found chain 1qddA in training set Warning: unaligning (T0547)P29 (1qddA)E33 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYEKK 1qddA 27 :YFNEDR T0547 30 :AI 1qddA 34 :TW Number of specific fragments extracted= 2 number of extra gaps= 1 total=27049 # 1rutX.23.49 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)K27 (1rutX)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rutX)I71 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYE 1rutX 65 :YTKS T0547 28 :K 1rutX 70 :M T0547 30 :AI 1rutX 72 :LC Number of specific fragments extracted= 3 number of extra gaps= 2 total=27052 # 1z53A.23.222 read from T0547.t2k.many.frag # found chain 1z53A in template set Warning: unaligning (T0547)P29 (1z53A)Y229 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYEKK 1z53A 223 :WDSKSG T0547 30 :AI 1z53A 230 :MM Number of specific fragments extracted= 2 number of extra gaps= 1 total=27054 # 1jiwI.23.69 read from T0547.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)N24 (1jiwI)L71 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :I 1jiwI 70 :L T0547 25 :YEKKPAI 1jiwI 72 :ERGGLTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27056 # 1u0fA.23.51 read from T0547.t2k.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)P29 (1u0fA)N57 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYEKK 1u0fA 51 :LVDYSK T0547 30 :AI 1u0fA 58 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27058 # 1kr4A.23.60 read from T0547.t2k.many.frag # found chain 1kr4A in training set Warning: unaligning (T0547)N24 (1kr4A)W46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1kr4A)K48 because L (left) conformation "forbidden" or filtered. T0547 23 :I 1kr4A 45 :Y T0547 25 :Y 1kr4A 47 :W T0547 27 :KKPAI 1kr4A 49 :GEIVQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=27061 # 1y60A.23.24 read from T0547.t2k.many.frag # found chain 1y60A in template set Warning: unaligning (T0547)Y25 (1y60A)G28 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1y60A)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1y60A)S32 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :IN 1y60A 26 :II T0547 26 :EK 1y60A 29 :PR T0547 30 :AI 1y60A 33 :PA Number of specific fragments extracted= 3 number of extra gaps= 2 total=27064 # 1cczA.23.36 read from T0547.t2k.many.frag # found chain 1cczA in training set Warning: unaligning (T0547)E26 (1cczA)N40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1cczA)S41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1cczA)F43 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INY 1cczA 37 :ELE T0547 28 :K 1cczA 42 :E T0547 30 :AI 1cczA 44 :RA Number of specific fragments extracted= 3 number of extra gaps= 2 total=27067 # 1t6cA.23.29 read from T0547.t2k.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)E26 (1t6cA)D30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1t6cA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 23 :INY 1t6cA 27 :QIK T0547 28 :KPAI 1t6cA 32 :KLSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27069 # 1l5aA.23.62 read from T0547.t2k.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)A30 (1l5aA)P70 because P (beta_P) conformation "forbidden" or filtered. T0547 23 :INYEKKP 1l5aA 63 :YWHPFSP T0547 31 :I 1l5aA 71 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=27071 1gxqA expands to /projects/compbio/data/pdb/1gxq.pdb.gz 1gxqA:# 1gxqA.23.23 read from T0547.t2k.many.frag # adding 1gxqA to template set # found chain 1gxqA in template set Warning: unaligning (T0547)Y25 (1gxqA)G149 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1gxqA)L153 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1gxqA)E154 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I31 (1gxqA)M155 because Y (epsilon') conformation "forbidden" or filtered. T0547 23 :IN 1gxqA 147 :MA T0547 26 :EKK 1gxqA 150 :EEP Number of specific fragments extracted= 2 number of extra gaps= 2 total=27073 # 1onwA.23.36 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)Y25 (1onwA)A39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1onwA)N41 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1onwA)I42 because P (beta_P) conformation "forbidden" or filtered. T0547 23 :IN 1onwA 37 :AV T0547 26 :E 1onwA 40 :S T0547 29 :PAI 1onwA 43 :PSD Number of specific fragments extracted= 3 number of extra gaps= 2 total=27076 # 1yr4B.23.17 read from T0547.t2k.many.frag # found chain 1yr4B in template set Warning: unaligning (T0547)P29 (1yr4B)V2024 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYEKK 1yr4B 2018 :NCTPTG T0547 30 :AI 1yr4B 2025 :WA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27078 2azeA expands to /projects/compbio/data/pdb/2aze.pdb.gz 2azeA:# 2azeA.23.89 read from T0547.t2k.many.frag # adding 2azeA to template set # found chain 2azeA in template set Warning: unaligning (T0547)K28 (2azeA)T290 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2azeA)F291 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYEK 2azeA 285 :FNFDN T0547 30 :AI 2azeA 292 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27080 # 1p1mA.23.29 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)K27 (1p1mA)G34 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1p1mA)V36 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1p1mA)K37 because P (beta_P) conformation "forbidden" or filtered. T0547 23 :INYE 1p1mA 30 :RVLQ T0547 28 :K 1p1mA 35 :E T0547 31 :I 1p1mA 38 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=27083 1b25A expands to /projects/compbio/data/pdb/1b25.pdb.gz 1b25A:# 1b25A.23.121 read from T0547.t2k.many.frag # adding 1b25A to template set # found chain 1b25A in template set Warning: unaligning (T0547)P29 (1b25A)V128 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYEKK 1b25A 122 :YIEDDN T0547 30 :AI 1b25A 129 :SI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27085 2al2A expands to /projects/compbio/data/pdb/2al2.pdb.gz 2al2A:# 2al2A.23.170 read from T0547.t2k.many.frag # adding 2al2A to template set # found chain 2al2A in template set Warning: unaligning (T0547)P29 (2al2A)K177 because G (3-10) conformation "forbidden" or filtered. T0547 23 :INYEKK 2al2A 171 :IAPTGA T0547 30 :AI 2al2A 178 :TF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27087 # 7odcA.24.12 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K28 (7odcA)G17 because G (3-10) conformation "forbidden" or filtered. T0547 24 :NYEK 7odcA 13 :ILDE T0547 29 :PAII 7odcA 18 :FTAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27089 # 1regX.24.39 read from T0547.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0547)E26 (1regX)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1regX)G43 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1regX)L44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1regX)Y45 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NY 1regX 40 :QK T0547 30 :AII 1regX 46 :YIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27091 # 1nwaA.24.78 read from T0547.t2k.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P29 (1nwaA)T63 because Y (epsilon') conformation "forbidden" or filtered. T0547 24 :NYEKK 1nwaA 58 :FDPTV T0547 30 :AII 1nwaA 64 :DYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27093 # 1rgxA.24.65 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)K28 (1rgxA)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rgxA)T51 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYEK 1rgxA 46 :SCPE T0547 30 :AII 1rgxA 52 :AVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27095 # 1rutX.24.114 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)K27 (1rutX)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 24 :NYE 1rutX 130 :YIN T0547 28 :KPAII 1rutX 134 :SLFCE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27097 # 1ypqA.24.22 read from T0547.t2k.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)K27 (1ypqA)G161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 24 :NYE 1ypqA 158 :FSS T0547 28 :K 1ypqA 162 :S T0547 30 :AII 1ypqA 164 :NWE Number of specific fragments extracted= 3 number of extra gaps= 2 total=27100 # 1kg0C.24.32 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. T0547 24 :NYEKK 1kg0C 118 :FTKKK T0547 30 :AII 1kg0C 124 :TWN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27102 # 2c5lC.24.24 read from T0547.t2k.many.frag # found chain 2c5lC in template set Warning: unaligning (T0547)E26 (2c5lC)P2156 because P (beta_P) conformation "forbidden" or filtered. T0547 24 :NY 2c5lC 2154 :KA T0547 27 :KKPAII 2c5lC 2157 :RVSTAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27104 # 1j2zA.24.182 read from T0547.t2k.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)E26 (1j2zA)G185 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1j2zA)F189 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NY 1j2zA 183 :VE T0547 27 :KKP 1j2zA 186 :NRA T0547 31 :II 1j2zA 190 :IR Number of specific fragments extracted= 3 number of extra gaps= 2 total=27107 # 2a2cA.24.224 read from T0547.t2k.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)E26 (2a2cA)F207 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (2a2cA)S208 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (2a2cA)P209 because C (cis) conformation "forbidden" or filtered. T0547 24 :NY 2a2cA 205 :IE T0547 29 :PAII 2a2cA 210 :LRAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27109 # 1xiwB.24.14 read from T0547.t2k.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)K27 (1xiwB)T18 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1xiwB)S19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1xiwB)I20 because D (zeta) conformation "forbidden" or filtered. T0547 24 :NYE 1xiwB 15 :NCN T0547 30 :AII 1xiwB 21 :TWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27111 # 1rutX.24.50 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)E26 (1rutX)S68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1rutX)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rutX)I71 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NY 1rutX 66 :TK T0547 28 :K 1rutX 70 :M T0547 30 :AII 1rutX 72 :LCR Number of specific fragments extracted= 3 number of extra gaps= 2 total=27114 # 1qddA.24.27 read from T0547.t2k.many.frag # found chain 1qddA in training set Warning: unaligning (T0547)P29 (1qddA)E33 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYEKK 1qddA 28 :FNEDR T0547 30 :AII 1qddA 34 :TWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27116 # 1tvxA.24.52 read from T0547.t2k.many.frag # found chain 1tvxA in training set Warning: unaligning (T0547)K28 (1tvxA)A72 because P (beta_P) conformation "forbidden" or filtered. T0547 24 :NYEK 1tvxA 68 :LDPD T0547 29 :PAII 1tvxA 73 :PRIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27118 # 1z53A.24.223 read from T0547.t2k.many.frag # found chain 1z53A in template set Warning: unaligning (T0547)P29 (1z53A)Y229 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYEKK 1z53A 224 :DSKSG T0547 30 :AII 1z53A 230 :MML Number of specific fragments extracted= 2 number of extra gaps= 1 total=27120 1rmd expands to /projects/compbio/data/pdb/1rmd.pdb.gz 1rmd:Warning: there is no chain 1rmd will retry with 1rmdA # 1rmd.24.38 read from T0547.t2k.many.frag # adding 1rmd to template set # found chain 1rmd in template set Warning: unaligning (T0547)P29 (1rmd)L44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1rmd)F45 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYEKK 1rmd 39 :TSCKH T0547 31 :II 1rmd 46 :CR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27122 # 1nuyA.24.5 read from T0547.t2k.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)E26 because first residue in template chain is (1nuyA)T1008 T0547 27 :KKPAII 1nuyA 1009 :NIVTLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27123 # 1jiwI.24.70 read from T0547.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)K28 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 24 :NYEK 1jiwI 71 :LERG T0547 29 :PAII 1jiwI 76 :LTLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=27125 # 1vdkA.24.14 read from T0547.t2k.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)P29 (1vdkA)Y20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1vdkA)W21 because P (beta_P) conformation "forbidden" or filtered. T0547 24 :NYEKK 1vdkA 15 :VPADK T0547 31 :II 1vdkA 22 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27127 # 1gxqA.24.24 read from T0547.t2k.many.frag # found chain 1gxqA in template set Warning: unaligning (T0547)Y25 (1gxqA)G149 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1gxqA)L153 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :N 1gxqA 148 :A T0547 26 :EKK 1gxqA 150 :EEP T0547 30 :AII 1gxqA 154 :EMG Number of specific fragments extracted= 3 number of extra gaps= 2 total=27130 # 1y60A.24.25 read from T0547.t2k.many.frag # found chain 1y60A in template set Warning: unaligning (T0547)K28 (1y60A)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1y60A)S32 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYEK 1y60A 27 :IGPR T0547 30 :AII 1y60A 33 :PAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27132 # 2b9eA.24.13 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)P29 (2b9eA)T145 because Y (epsilon') conformation "forbidden" or filtered. T0547 24 :NYEKK 2b9eA 140 :VNTLK T0547 30 :AII 2b9eA 146 :CSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27134 1m2oA expands to /projects/compbio/data/pdb/1m2o.pdb.gz 1m2oA:# 1m2oA.24.181 read from T0547.t2k.many.frag # adding 1m2oA to template set # found chain 1m2oA in template set T0547 24 :NYEKKPAII 1m2oA 182 :FRGDREYQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27135 # 1kr4A.24.61 read from T0547.t2k.many.frag # found chain 1kr4A in training set Warning: unaligning (T0547)N24 (1kr4A)W46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1kr4A)K48 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1kr4A)G49 because T (delta_L) conformation "forbidden" or filtered. T0547 25 :Y 1kr4A 47 :W T0547 28 :KPAII 1kr4A 50 :EIVQD Number of specific fragments extracted= 2 number of extra gaps= 2 total=27137 # 2f6eA.24.23 read from T0547.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)E26 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (2f6eA)Q31 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NY 2f6eA 25 :FR T0547 27 :KKP 2f6eA 28 :GLP T0547 31 :II 2f6eA 32 :IG Number of specific fragments extracted= 3 number of extra gaps= 2 total=27140 # 1u0fA.24.52 read from T0547.t2k.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)P29 (1u0fA)N57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I32 (1u0fA)N60 because Y (epsilon') conformation "forbidden" or filtered. T0547 24 :NYEKK 1u0fA 52 :VDYSK T0547 30 :AI 1u0fA 58 :LV Number of specific fragments extracted= 2 number of extra gaps= 2 total=27142 # 2azeA.24.90 read from T0547.t2k.many.frag # found chain 2azeA in template set Warning: unaligning (T0547)K27 (2azeA)N289 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (2azeA)T290 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2azeA)F291 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYE 2azeA 286 :NFD T0547 30 :AII 2azeA 292 :EIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=27144 # 1t6cA.24.30 read from T0547.t2k.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)E26 (1t6cA)D30 because L (left) conformation "forbidden" or filtered. T0547 24 :NY 1t6cA 28 :IK T0547 27 :KKPAII 1t6cA 31 :GKLSII Number of specific fragments extracted= 2 number of extra gaps= 1 total=27146 # 1cczA.24.37 read from T0547.t2k.many.frag # found chain 1cczA in training set Warning: unaligning (T0547)K27 (1cczA)S41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1cczA)F43 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYE 1cczA 38 :LEN T0547 28 :K 1cczA 42 :E T0547 30 :AII 1cczA 44 :RAF Number of specific fragments extracted= 3 number of extra gaps= 2 total=27149 # 2al2A.24.171 read from T0547.t2k.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)P29 (2al2A)K177 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (2al2A)T178 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYEKK 2al2A 172 :APTGA T0547 31 :II 2al2A 179 :FA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27151 # 7odcA.25.13 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K28 (7odcA)G17 because G (3-10) conformation "forbidden" or filtered. T0547 25 :YEK 7odcA 14 :LDE T0547 29 :PAIID 7odcA 18 :FTAKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27153 # 1rgxA.25.66 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)K28 (1rgxA)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rgxA)T51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1rgxA)S55 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YEK 1rgxA 47 :CPE T0547 30 :AII 1rgxA 52 :AVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27155 # 1nwaA.25.79 read from T0547.t2k.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P29 (1nwaA)T63 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1nwaA)D64 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YEKK 1nwaA 59 :DPTV T0547 31 :IID 1nwaA 65 :YRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27157 # 1ypqA.25.23 read from T0547.t2k.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)K27 (1ypqA)G161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YE 1ypqA 159 :SS T0547 28 :K 1ypqA 162 :S T0547 30 :AIID 1ypqA 164 :NWEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=27160 # 1regX.25.40 read from T0547.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0547)E26 (1regX)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1regX)Y45 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1regX)Y46 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :Y 1regX 41 :K T0547 27 :KK 1regX 43 :GL T0547 31 :IID 1regX 47 :IVH Number of specific fragments extracted= 3 number of extra gaps= 2 total=27163 # 2c5lC.25.25 read from T0547.t2k.many.frag # found chain 2c5lC in template set T0547 25 :YEKKPAIID 2c5lC 2155 :APRVSTAQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27164 # 1j2zA.25.183 read from T0547.t2k.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)D33 (1j2zA)G192 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YEKKPAII 1j2zA 184 :EGNRAFIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=27165 # 1nuyA.25.6 read from T0547.t2k.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)E26 because first residue in template chain is (1nuyA)T1008 T0547 27 :KKPAIID 1nuyA 1009 :NIVTLTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27166 # 1kg0C.25.33 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)K27 (1kg0C)K121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YE 1kg0C 119 :TK T0547 28 :K 1kg0C 122 :K T0547 30 :AIID 1kg0C 124 :TWNG Number of specific fragments extracted= 3 number of extra gaps= 2 total=27169 # 1qddA.25.28 read from T0547.t2k.many.frag # found chain 1qddA in training set Warning: unaligning (T0547)P29 (1qddA)E33 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YEKK 1qddA 29 :NEDR T0547 30 :AIID 1qddA 34 :TWVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27171 # 2a2cA.25.225 read from T0547.t2k.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K27 (2a2cA)S208 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (2a2cA)P209 because C (cis) conformation "forbidden" or filtered. T0547 25 :YE 2a2cA 206 :EF T0547 29 :PAIID 2a2cA 210 :LRATD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27173 # 1rutX.25.115 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)E26 (1rutX)N132 because L (left) conformation "forbidden" or filtered. T0547 25 :Y 1rutX 131 :I T0547 27 :KKPAIID 1rutX 133 :GSLFCEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=27175 # 1xiwB.25.15 read from T0547.t2k.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)K27 (1xiwB)T18 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1xiwB)I20 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1xiwB)E24 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YE 1xiwB 16 :CN T0547 28 :K 1xiwB 19 :S T0547 30 :AII 1xiwB 21 :TWV Number of specific fragments extracted= 3 number of extra gaps= 3 total=27178 # 1rmd.25.39 read from T0547.t2k.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)K27 (1rmd)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rmd)L44 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YE 1rmd 40 :SC T0547 28 :K 1rmd 43 :H T0547 30 :AIID 1rmd 45 :FCRI Number of specific fragments extracted= 3 number of extra gaps= 2 total=27181 # 2b9eA.25.14 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)P29 (2b9eA)T145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (2b9eA)C146 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YEKK 2b9eA 141 :NTLK T0547 31 :IID 2b9eA 147 :SDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27183 2bzgA expands to /projects/compbio/data/pdb/2bzg.pdb.gz 2bzgA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2bzgA.25.28 read from T0547.t2k.many.frag # adding 2bzgA to template set # found chain 2bzgA in template set Warning: unaligning (T0547)K28 (2bzgA)G45 because S (epsilon) conformation "forbidden" or filtered. T0547 25 :YEK 2bzgA 42 :QEQ T0547 29 :PAIID 2bzgA 46 :HQLLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27185 # 1z53A.25.224 read from T0547.t2k.many.frag # found chain 1z53A in template set Warning: unaligning (T0547)P29 (1z53A)Y229 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1z53A)M230 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YEKK 1z53A 225 :SKSG T0547 31 :IID 1z53A 231 :MLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27187 # 1rutX.25.51 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)E26 (1rutX)S68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rutX)I71 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :Y 1rutX 67 :K T0547 27 :KK 1rutX 69 :GM T0547 30 :AIID 1rutX 72 :LCRN Number of specific fragments extracted= 3 number of extra gaps= 2 total=27190 # 1m2oA.25.182 read from T0547.t2k.many.frag # found chain 1m2oA in template set T0547 25 :YEKKPAIID 1m2oA 183 :RGDREYQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27191 1c1yB expands to /projects/compbio/data/pdb/1c1y.pdb.gz 1c1yB:Skipped atom 1478, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1480, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1482, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1484, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1486, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1488, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1490, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1492, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1494, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1496, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1498, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1581, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1583, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1585, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1587, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1589, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1591, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1593, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1595, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1597, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1599, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1609, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1611, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1613, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1615, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1617, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1619, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1629, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1631, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1633, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1635, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1637, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1639, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1641, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1643, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1984, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1986, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1988, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1990, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1992, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1994, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1996, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1998, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 2000, because occupancy 0.500 <= existing 0.500 in 1c1yB # 1c1yB.25.17 read from T0547.t2k.many.frag # adding 1c1yB to template set # found chain 1c1yB in template set Warning: unaligning (T0547)K28 (1c1yB)G75 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1c1yB)S77 because P (beta_P) conformation "forbidden" or filtered. T0547 25 :YEK 1c1yB 72 :VRN T0547 29 :P 1c1yB 76 :M T0547 31 :IID 1c1yB 78 :LHD Number of specific fragments extracted= 3 number of extra gaps= 2 total=27194 # 2azeA.25.91 read from T0547.t2k.many.frag # found chain 2azeA in template set Warning: unaligning (T0547)K27 (2azeA)N289 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2azeA)F291 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (2azeA)E292 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YE 2azeA 287 :FD T0547 28 :K 2azeA 290 :T T0547 31 :IID 2azeA 293 :IHD Number of specific fragments extracted= 3 number of extra gaps= 2 total=27197 # 1tvxA.25.53 read from T0547.t2k.many.frag # found chain 1tvxA in training set T0547 25 :YEKKPAIID 1tvxA 69 :DPDAPRIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27198 # 1y60A.25.26 read from T0547.t2k.many.frag # found chain 1y60A in template set Warning: unaligning (T0547)K27 (1y60A)R30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1y60A)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1y60A)S32 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YE 1y60A 28 :GP T0547 30 :AIID 1y60A 33 :PAET Number of specific fragments extracted= 2 number of extra gaps= 1 total=27200 1mswD expands to /projects/compbio/data/pdb/1msw.pdb.gz 1mswD:# 1mswD.25.563 read from T0547.t2k.many.frag # adding 1mswD to template set # found chain 1mswD in template set T0547 25 :YEKKPAIID 1mswD 564 :SETVQDIYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27201 # 1vdkA.25.15 read from T0547.t2k.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)P29 (1vdkA)Y20 because G (3-10) conformation "forbidden" or filtered. T0547 25 :YEKK 1vdkA 16 :PADK T0547 30 :AIID 1vdkA 21 :WGAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27203 # 1u0fA.25.53 read from T0547.t2k.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)P29 (1u0fA)N57 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YEKK 1u0fA 53 :DYSK T0547 30 :AIID 1u0fA 58 :LVNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27205 1rmg expands to /projects/compbio/data/pdb/1rmg.pdb.gz 1rmg:Warning: there is no chain 1rmg will retry with 1rmgA # 1rmg.25.29 read from T0547.t2k.many.frag # adding 1rmg to template set # found chain 1rmg in template set Warning: unaligning (T0547)K27 (1rmg)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I31 (1rmg)V36 because G (3-10) conformation "forbidden" or filtered. T0547 25 :YE 1rmg 30 :AD T0547 28 :KPA 1rmg 33 :STD T0547 32 :ID 1rmg 37 :GP Number of specific fragments extracted= 3 number of extra gaps= 2 total=27208 # 1n62A.25.18 read from T0547.t2k.many.frag # found chain 1n62A in training set Warning: unaligning (T0547)E26 (1n62A)E20 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1n62A)L24 because P (beta_P) conformation "forbidden" or filtered. T0547 25 :Y 1n62A 19 :V T0547 27 :KKP 1n62A 21 :PRT T0547 31 :IID 1n62A 25 :LIH Number of specific fragments extracted= 3 number of extra gaps= 2 total=27211 # 1pkhA.25.67 read from T0547.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)A30 (1pkhA)N73 because L (left) conformation "forbidden" or filtered. T0547 25 :YEKKP 1pkhA 68 :CPLNY T0547 31 :IID 1pkhA 74 :LTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27213 2aqlA expands to /projects/compbio/data/pdb/2aql.pdb.gz 2aqlA:# 2aqlA.25.33 read from T0547.t2k.many.frag # adding 2aqlA to template set # found chain 2aqlA in template set Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE in next template residue (2aqlA)P185 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE at template residue (2aqlA)P185 Warning: unaligning (T0547)K27 (2aqlA)A186 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2aqlA)K188 because D (zeta) conformation "forbidden" or filtered. T0547 28 :K 2aqlA 187 :K T0547 30 :AIID 2aqlA 189 :NVDS Number of specific fragments extracted= 2 number of extra gaps= 2 total=27215 # 7odcA.26.14 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 26 :EKKPAIIDI 7odcA 15 :DEGFTAKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27216 # 1j2zA.26.184 read from T0547.t2k.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)E26 (1j2zA)G185 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1j2zA)F189 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I32 (1j2zA)R191 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1j2zA)G192 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :KKP 1j2zA 186 :NRA T0547 31 :I 1j2zA 190 :I T0547 34 :I 1j2zA 193 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=27219 # 1nuyA.26.7 read from T0547.t2k.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)E26 because first residue in template chain is (1nuyA)T1008 T0547 27 :KKPAIIDI 1nuyA 1009 :NIVTLTRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27220 # 2c5lC.26.26 read from T0547.t2k.many.frag # found chain 2c5lC in template set Warning: unaligning (T0547)E26 (2c5lC)P2156 because P (beta_P) conformation "forbidden" or filtered. T0547 27 :KKPAIIDI 2c5lC 2157 :RVSTAQDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27221 # 1nwaA.26.80 read from T0547.t2k.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P29 (1nwaA)T63 because Y (epsilon') conformation "forbidden" or filtered. T0547 26 :EKK 1nwaA 60 :PTV T0547 30 :AIIDI 1nwaA 64 :DYRTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27223 # 2b9eA.26.15 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)P29 (2b9eA)T145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (2b9eA)C146 because E (beta_S) conformation "forbidden" or filtered. T0547 26 :EKK 2b9eA 142 :TLK T0547 31 :IIDI 2b9eA 147 :SDDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27225 # 1rgxA.26.67 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)P29 (1rgxA)T51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1rgxA)S55 because Y (epsilon') conformation "forbidden" or filtered. T0547 26 :EKK 1rgxA 48 :PEG T0547 30 :AII 1rgxA 52 :AVL T0547 34 :I 1rgxA 56 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=27228 # 1ypqA.26.24 read from T0547.t2k.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)K27 (1ypqA)G161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 26 :E 1ypqA 160 :S T0547 28 :K 1ypqA 162 :S T0547 30 :AIIDI 1ypqA 164 :NWEKS Number of specific fragments extracted= 3 number of extra gaps= 2 total=27231 # 1regX.26.41 read from T0547.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0547)E26 (1regX)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1regX)Y45 because E (beta_S) conformation "forbidden" or filtered. T0547 27 :KK 1regX 43 :GL T0547 30 :AIIDI 1regX 46 :YIVHF Number of specific fragments extracted= 2 number of extra gaps= 2 total=27233 # 2aqlA.26.34 read from T0547.t2k.many.frag # found chain 2aqlA in template set Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE at template residue (2aqlA)P185 Warning: unaligning (T0547)P29 (2aqlA)K188 because D (zeta) conformation "forbidden" or filtered. T0547 27 :KK 2aqlA 186 :AK T0547 30 :AIIDI 2aqlA 189 :NVDSI Number of specific fragments extracted= 2 number of extra gaps= 2 total=27235 # 1rmd.26.40 read from T0547.t2k.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)K27 (1rmd)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rmd)L44 because E (beta_S) conformation "forbidden" or filtered. T0547 26 :E 1rmd 41 :C T0547 28 :K 1rmd 43 :H T0547 30 :AIIDI 1rmd 45 :FCRIC Number of specific fragments extracted= 3 number of extra gaps= 2 total=27238 # 1kg0C.26.34 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)K28 (1kg0C)K122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1kg0C)T124 because P (beta_P) conformation "forbidden" or filtered. T0547 26 :EK 1kg0C 120 :KK T0547 31 :IIDI 1kg0C 125 :WNGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27240 # 1rmg.26.30 read from T0547.t2k.many.frag # found chain 1rmg in template set Warning: unaligning (T0547)K28 (1rmg)S33 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I31 (1rmg)V36 because G (3-10) conformation "forbidden" or filtered. T0547 26 :EK 1rmg 31 :DN T0547 29 :PA 1rmg 34 :TD T0547 32 :IDI 1rmg 37 :GPA Number of specific fragments extracted= 3 number of extra gaps= 2 total=27243 # 2a2cA.26.226 read from T0547.t2k.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K27 (2a2cA)S208 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (2a2cA)P209 because C (cis) conformation "forbidden" or filtered. T0547 26 :E 2a2cA 207 :F T0547 29 :PAIIDI 2a2cA 210 :LRATDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27245 # 2bzgA.26.29 read from T0547.t2k.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)K27 (2bzgA)Q44 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (2bzgA)G45 because S (epsilon) conformation "forbidden" or filtered. T0547 26 :E 2bzgA 43 :E T0547 29 :PAIIDI 2bzgA 46 :HQLLKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27247 # 1c1yB.26.18 read from T0547.t2k.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)K28 (1c1yB)G75 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1c1yB)S77 because P (beta_P) conformation "forbidden" or filtered. T0547 26 :EK 1c1yB 73 :RN T0547 29 :P 1c1yB 76 :M T0547 31 :IIDI 1c1yB 78 :LHDC Number of specific fragments extracted= 3 number of extra gaps= 2 total=27250 1tzyA expands to /projects/compbio/data/pdb/1tzy.pdb.gz 1tzyA:# 1tzyA.26.22 read from T0547.t2k.many.frag # adding 1tzyA to template set # found chain 1tzyA in template set T0547 26 :EKKPAIIDI 1tzyA 22 :GLQFPVGRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27251 # 1qddA.26.29 read from T0547.t2k.many.frag # found chain 1qddA in training set Warning: unaligning (T0547)P29 (1qddA)E33 because E (beta_S) conformation "forbidden" or filtered. T0547 26 :EKK 1qddA 30 :EDR T0547 30 :AIIDI 1qddA 34 :TWVDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27253 # 2azeA.26.92 read from T0547.t2k.many.frag # found chain 2azeA in template set Warning: unaligning (T0547)P29 (2azeA)F291 because E (beta_S) conformation "forbidden" or filtered. T0547 26 :EKK 2azeA 288 :DNT T0547 30 :AIIDI 2azeA 292 :EIHDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27255 # 1mswD.26.564 read from T0547.t2k.many.frag # found chain 1mswD in template set Warning: unaligning (T0547)A30 (1mswD)D569 because D (zeta) conformation "forbidden" or filtered. T0547 26 :EKKP 1mswD 565 :ETVQ T0547 31 :IIDI 1mswD 570 :IYGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27257 # 1m2oA.26.183 read from T0547.t2k.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)K28 (1m2oA)R186 because E (beta_S) conformation "forbidden" or filtered. T0547 26 :EK 1m2oA 184 :GD T0547 29 :PAIIDI 1m2oA 187 :EYQLEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27259 # 1tvxA.26.54 read from T0547.t2k.many.frag # found chain 1tvxA in training set Warning: unaligning (T0547)K28 (1tvxA)A72 because P (beta_P) conformation "forbidden" or filtered. T0547 26 :EK 1tvxA 70 :PD T0547 29 :PAIIDI 1tvxA 73 :PRIKKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27261 # 1z53A.26.225 read from T0547.t2k.many.frag # found chain 1z53A in template set Warning: unaligning (T0547)K28 (1z53A)G228 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1z53A)Y229 because E (beta_S) conformation "forbidden" or filtered. T0547 26 :EK 1z53A 226 :KS T0547 30 :AIIDI 1z53A 230 :MMLPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27263 # 1yleA.26.7 read from T0547.t2k.many.frag # found chain 1yleA in training set Warning: unaligning (T0547)E26 (1yleA)P6 because P (beta_P) conformation "forbidden" or filtered. T0547 27 :KKPAIIDI 1yleA 7 :AQAADLPQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=27264 # 1wb4A.26.86 read from T0547.t2k.many.frag # found chain 1wb4A in training set T0547 26 :EKKPAIIDI 1wb4A 875 :SNDVKLQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27265 # 1rutX.26.52 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)E26 (1rutX)S68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rutX)I71 because E (beta_S) conformation "forbidden" or filtered. T0547 27 :KK 1rutX 69 :GM T0547 30 :AIIDI 1rutX 72 :LCRND Number of specific fragments extracted= 2 number of extra gaps= 2 total=27267 # 1m22A.26.7 read from T0547.t2k.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)K27 (1m22A)A46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1m22A)E47 because L (left) conformation "forbidden" or filtered. T0547 26 :E 1m22A 45 :Y T0547 29 :PAIIDI 1m22A 48 :TDVADL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27269 # 1pkhA.26.68 read from T0547.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)K28 (1pkhA)N71 because L (left) conformation "forbidden" or filtered. T0547 26 :EK 1pkhA 69 :PL T0547 29 :PAIIDI 1pkhA 72 :YNLTEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27271 1vq2A expands to /projects/compbio/data/pdb/1vq2.pdb.gz 1vq2A:# 1vq2A.26.43 read from T0547.t2k.many.frag # adding 1vq2A to template set # found chain 1vq2A in template set Warning: unaligning (T0547)E26 (1vq2A)A44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1vq2A)G45 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1vq2A)N48 because P (beta_P) conformation "forbidden" or filtered. T0547 28 :KP 1vq2A 46 :GV T0547 31 :IIDI 1vq2A 49 :CCDY Number of specific fragments extracted= 2 number of extra gaps= 2 total=27273 1zx5A expands to /projects/compbio/data/pdb/1zx5.pdb.gz 1zx5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 90, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 92, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 94, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 98, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 100, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 102, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 104, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 454, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 456, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 458, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 460, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 462, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 464, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 466, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 468, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 470, because occupancy 0.500 <= existing 0.500 in 1zx5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 511, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 513, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 515, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 517, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 519, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 521, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 523, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 525, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 527, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1487, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1489, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1491, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1493, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1495, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1497, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1499, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1501, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1503, because occupancy 0.500 <= existing 0.500 in 1zx5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2173, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 2177, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 2179, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 2181, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 2183, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 2185, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 2187, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 2189, because occupancy 0.500 <= existing 0.500 in 1zx5A # 1zx5A.26.55 read from T0547.t2k.many.frag # adding 1zx5A to template set # found chain 1zx5A in template set Warning: unaligning (T0547)E26 (1zx5A)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1zx5A)L58 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :KK 1zx5A 56 :QQ T0547 30 :AIIDI 1zx5A 59 :SMIEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27275 # 2b9eA.27.16 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)P29 (2b9eA)T145 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :KK 2b9eA 143 :LK T0547 30 :AIIDIV 2b9eA 146 :CSDDVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27277 # 7odcA.27.15 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 27 :KKPAIIDIV 7odcA 16 :EGFTAKDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27278 # 1nuyA.27.8 read from T0547.t2k.many.frag # found chain 1nuyA in training set T0547 27 :KKPAIIDIV 1nuyA 1009 :NIVTLTRFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27279 # 1j2zA.27.185 read from T0547.t2k.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)I32 (1j2zA)R191 because G (3-10) conformation "forbidden" or filtered. T0547 27 :KKPAI 1j2zA 186 :NRAFI T0547 33 :DIV 1j2zA 192 :GLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27281 # 2c5lC.27.27 read from T0547.t2k.many.frag # found chain 2c5lC in template set T0547 27 :KKPAIIDIV 2c5lC 2157 :RVSTAQDVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27282 # 1nwaA.27.81 read from T0547.t2k.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P29 (1nwaA)T63 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1nwaA)D64 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :KK 1nwaA 61 :TV T0547 31 :IIDIV 1nwaA 65 :YRTLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27284 # 1tzyA.27.23 read from T0547.t2k.many.frag # found chain 1tzyA in template set Warning: unaligning (T0547)A30 (1tzyA)P26 because N (gamma') conformation "forbidden" or filtered. T0547 27 :KKP 1tzyA 23 :LQF T0547 31 :IIDIV 1tzyA 27 :VGRVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=27286 # 1regX.27.42 read from T0547.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0547)K27 (1regX)G43 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1regX)Y45 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :K 1regX 44 :L T0547 30 :AIIDIV 1regX 46 :YIVHFK Number of specific fragments extracted= 2 number of extra gaps= 2 total=27288 # 2aqlA.27.35 read from T0547.t2k.many.frag # found chain 2aqlA in template set Warning: unaligning (T0547)P29 (2aqlA)K188 because D (zeta) conformation "forbidden" or filtered. T0547 27 :KK 2aqlA 186 :AK T0547 30 :AIIDIV 2aqlA 189 :NVDSIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27290 # 1wb4A.27.87 read from T0547.t2k.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)A30 (1wb4A)K879 because L (left) conformation "forbidden" or filtered. T0547 27 :KKP 1wb4A 876 :NDV T0547 31 :IIDIV 1wb4A 880 :LQNIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27292 # 1rmd.27.41 read from T0547.t2k.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)K27 (1rmd)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rmd)L44 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :K 1rmd 43 :H T0547 30 :AIIDIV 1rmd 45 :FCRICI Number of specific fragments extracted= 2 number of extra gaps= 2 total=27294 # 1ypqA.27.25 read from T0547.t2k.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :KK 1ypqA 161 :GS T0547 30 :AIIDIV 1ypqA 164 :NWEKSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27296 # 1rgxA.27.68 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)K28 (1rgxA)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rgxA)T51 because E (beta_S) conformation "forbidden" or filtered. T0547 27 :K 1rgxA 49 :E T0547 30 :AIIDIV 1rgxA 52 :AVLSCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27298 # 1c1yB.27.19 read from T0547.t2k.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)K28 (1c1yB)G75 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)V35 (1c1yB)L82 because G (3-10) conformation "forbidden" or filtered. T0547 27 :K 1c1yB 74 :N T0547 29 :PAIIDI 1c1yB 76 :MSLHDC Number of specific fragments extracted= 2 number of extra gaps= 2 total=27300 # 1kg0C.27.35 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :KK 1kg0C 121 :KK T0547 30 :AIIDIV 1kg0C 124 :TWNGCF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27302 # 1m1nA.27.157 read from T0547.t2k.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)K28 (1m1nA)G160 because L (left) conformation "forbidden" or filtered. T0547 27 :K 1m1nA 159 :I T0547 29 :PAIIDIV 1m1nA 161 :DDIESVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27304 # 1m22A.27.8 read from T0547.t2k.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)K28 (1m22A)E47 because L (left) conformation "forbidden" or filtered. T0547 27 :K 1m22A 46 :A T0547 29 :PAIIDIV 1m22A 48 :TDVADLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27306 # 2bzgA.27.30 read from T0547.t2k.many.frag # found chain 2bzgA in template set T0547 27 :KKPAIIDIV 2bzgA 44 :QGHQLLKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=27307 # 1pkhA.27.69 read from T0547.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)K27 (1pkhA)L70 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1pkhA)N71 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1pkhA)N73 because L (left) conformation "forbidden" or filtered. T0547 29 :P 1pkhA 72 :Y T0547 31 :IIDIV 1pkhA 74 :LTEEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=27309 # 2a2cA.27.227 read from T0547.t2k.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K28 (2a2cA)P209 because C (cis) conformation "forbidden" or filtered. T0547 27 :K 2a2cA 208 :S T0547 29 :PAIIDIV 2a2cA 210 :LRATDVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27311 # 1rmg.27.31 read from T0547.t2k.many.frag # found chain 1rmg in template set T0547 27 :KKPAIIDIV 1rmg 32 :NSTDVGPAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27312 2cx6A expands to /projects/compbio/data/pdb/2cx6.pdb.gz 2cx6A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2cx6A.27.29 read from T0547.t2k.many.frag # adding 2cx6A to template set # found chain 2cx6A in template set Warning: unaligning (T0547)P29 (2cx6A)V32 because D (zeta) conformation "forbidden" or filtered. T0547 27 :KK 2cx6A 30 :DK T0547 30 :AIIDIV 2cx6A 33 :RDLDSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27314 # 1qddA.27.30 read from T0547.t2k.many.frag # found chain 1qddA in training set Warning: unaligning (T0547)P29 (1qddA)E33 because E (beta_S) conformation "forbidden" or filtered. T0547 27 :KK 1qddA 31 :DR T0547 30 :AIIDIV 1qddA 34 :TWVDAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27316 # 2azeA.27.93 read from T0547.t2k.many.frag # found chain 2azeA in template set Warning: unaligning (T0547)K27 (2azeA)N289 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2azeA)F291 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :K 2azeA 290 :T T0547 30 :AIIDIV 2azeA 292 :EIHDDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=27318 # 1kgdA.27.13 read from T0547.t2k.many.frag # found chain 1kgdA in training set Warning: unaligning (T0547)K28 (1kgdA)G744 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1kgdA)G746 because T (delta_L) conformation "forbidden" or filtered. T0547 27 :K 1kgdA 743 :H T0547 29 :P 1kgdA 745 :V T0547 31 :IIDIV 1kgdA 747 :RRHIK Number of specific fragments extracted= 3 number of extra gaps= 2 total=27321 # 1senA.27.30 read from T0547.t2k.many.frag # found chain 1senA in training set Warning: unaligning (T0547)P29 (1senA)R41 because E (beta_S) conformation "forbidden" or filtered. T0547 27 :KK 1senA 39 :HW T0547 30 :AIIDIV 1senA 42 :TLEDGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27323 # 1evlA.27.20 read from T0547.t2k.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)K27 (1evlA)G262 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1evlA)F265 because N (gamma') conformation "forbidden" or filtered. T0547 28 :KP 1evlA 263 :MV T0547 31 :IIDIV 1evlA 266 :WHNDG Number of specific fragments extracted= 2 number of extra gaps= 2 total=27325 # 1tzvA.27.22 read from T0547.t2k.many.frag # found chain 1tzvA in training set Warning: unaligning (T0547)P29 (1tzvA)E25 because E (beta_S) conformation "forbidden" or filtered. T0547 27 :KK 1tzvA 23 :RD T0547 30 :AIIDIV 1tzvA 26 :DLEQIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27327 2bh4X expands to /projects/compbio/data/pdb/2bh4.pdb.gz 2bh4X:Skipped atom 286, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 287, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 288, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 289, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 290, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 291, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 292, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 293, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 506, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 507, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 730, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 731, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 732, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 733, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 734, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 735, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 736, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 737, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 745, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 746, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 747, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 748, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 749, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 750, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 751, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 761, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 762, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 764, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 765, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 766, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 767, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 768, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 769, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 779, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 780, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 781, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 782, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 784, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 785, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 786, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 787, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 795, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 796, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 797, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 798, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 799, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 800, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 801, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 880, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 881, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 882, because occupancy 0.500 <= existing 0.500 in 2bh4X # 2bh4X.27.50 read from T0547.t2k.many.frag # adding 2bh4X to template set # found chain 2bh4X in template set Warning: unaligning (T0547)K28 (2bh4X)G52 because T (delta_L) conformation "forbidden" or filtered. T0547 27 :K 2bh4X 51 :E T0547 29 :PAIIDIV 2bh4X 53 :FKYGDGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27329 1zb1A expands to /projects/compbio/data/pdb/1zb1.pdb.gz 1zb1A:# 1zb1A.27.18 read from T0547.t2k.many.frag # adding 1zb1A to template set # found chain 1zb1A in template set Warning: unaligning (T0547)K27 (1zb1A)E14 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1zb1A)L16 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :K 1zb1A 15 :K T0547 30 :AIIDIV 1zb1A 17 :DWKKGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27331 # 2b9eA.28.17 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)P29 (2b9eA)T145 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :K 2b9eA 144 :K T0547 30 :AIIDIVK 2b9eA 146 :CSDDVVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27333 # 1j2zA.28.186 read from T0547.t2k.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)D33 (1j2zA)G192 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :KPAII 1j2zA 187 :RAFIR T0547 34 :IVK 1j2zA 193 :LNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27335 # 1nuyA.28.9 read from T0547.t2k.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)K28 (1nuyA)I1010 because P (beta_P) conformation "forbidden" or filtered. T0547 29 :PAIIDIVK 1nuyA 1011 :VTLTRFVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=27336 # 1tzyA.28.24 read from T0547.t2k.many.frag # found chain 1tzyA in template set Warning: unaligning (T0547)A30 (1tzyA)P26 because N (gamma') conformation "forbidden" or filtered. T0547 28 :KP 1tzyA 24 :QF T0547 31 :IIDIVK 1tzyA 27 :VGRVHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27338 # 2c5lC.28.28 read from T0547.t2k.many.frag # found chain 2c5lC in template set T0547 28 :KPAIIDIVK 2c5lC 2158 :VSTAQDVIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27339 # 1m1nA.28.158 read from T0547.t2k.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)A30 (1m1nA)D162 because D (zeta) conformation "forbidden" or filtered. T0547 28 :KP 1m1nA 160 :GD T0547 31 :IIDIVK 1m1nA 163 :IESVSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27341 # 7odcA.28.16 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A30 (7odcA)T19 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :KP 7odcA 17 :GF T0547 31 :IIDIVK 7odcA 20 :AKDILD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27343 # 2aqlA.28.36 read from T0547.t2k.many.frag # found chain 2aqlA in template set Warning: unaligning (T0547)P29 (2aqlA)K188 because D (zeta) conformation "forbidden" or filtered. T0547 28 :K 2aqlA 187 :K T0547 30 :AIIDIVK 2aqlA 189 :NVDSILE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27345 # 2bh4X.28.51 read from T0547.t2k.many.frag # found chain 2bh4X in template set Warning: unaligning (T0547)K28 (2bh4X)G52 because T (delta_L) conformation "forbidden" or filtered. T0547 29 :PAIIDIVK 2bh4X 53 :FKYGDGIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27346 # 1c1yB.28.20 read from T0547.t2k.many.frag # found chain 1c1yB in template set T0547 28 :KPAIIDIVK 1c1yB 75 :GMSLHDCLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27347 # 1m22A.28.9 read from T0547.t2k.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)K28 (1m22A)E47 because L (left) conformation "forbidden" or filtered. T0547 29 :PAIIDIVK 1m22A 48 :TDVADLQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27348 # 1regX.28.43 read from T0547.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0547)P29 (1regX)Y45 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1regX)H49 because P (beta_P) conformation "forbidden" or filtered. T0547 28 :K 1regX 44 :L T0547 30 :AII 1regX 46 :YIV T0547 34 :IVK 1regX 50 :FKE Number of specific fragments extracted= 3 number of extra gaps= 2 total=27351 # 1senA.28.31 read from T0547.t2k.many.frag # found chain 1senA in training set Warning: unaligning (T0547)K28 (1senA)W40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1senA)R41 because E (beta_S) conformation "forbidden" or filtered. T0547 30 :AIIDIVK 1senA 42 :TLEDGKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27352 # 1wb4A.28.88 read from T0547.t2k.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)A30 (1wb4A)K879 because L (left) conformation "forbidden" or filtered. T0547 28 :KP 1wb4A 877 :DV T0547 31 :IIDIVK 1wb4A 880 :LQNILD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27354 # 1pkhA.28.70 read from T0547.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)A30 (1pkhA)N73 because L (left) conformation "forbidden" or filtered. T0547 28 :KP 1pkhA 71 :NY T0547 31 :IIDIVK 1pkhA 74 :LTEEKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27356 # 1ypqA.28.26 read from T0547.t2k.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)K28 (1ypqA)S162 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 30 :AIIDIVK 1ypqA 164 :NWEKSQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27357 # 1rmg.28.32 read from T0547.t2k.many.frag # found chain 1rmg in template set T0547 28 :KPAIIDIVK 1rmg 33 :STDVGPAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27358 # 1qddA.28.31 read from T0547.t2k.many.frag # found chain 1qddA in training set Warning: unaligning (T0547)P29 (1qddA)E33 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :K 1qddA 32 :R T0547 30 :AIIDIVK 1qddA 34 :TWVDADL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27360 # 1tzvA.28.23 read from T0547.t2k.many.frag # found chain 1tzvA in training set Warning: unaligning (T0547)P29 (1tzvA)E25 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :K 1tzvA 24 :D T0547 30 :AIIDIVK 1tzvA 26 :DLEQILE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27362 # 1rmd.28.42 read from T0547.t2k.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)P29 (1rmd)L44 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :K 1rmd 43 :H T0547 30 :AIIDIVK 1rmd 45 :FCRICIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27364 # 1nwaA.28.82 read from T0547.t2k.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P29 (1nwaA)T63 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1nwaA)D64 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :K 1nwaA 62 :V T0547 31 :IIDIVK 1nwaA 65 :YRTLLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27366 # 1tvxA.28.56 read from T0547.t2k.many.frag # found chain 1tvxA in training set T0547 28 :KPAIIDIVK 1tvxA 72 :APRIKKIVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27367 # 1kg0C.28.36 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :K 1kg0C 122 :K T0547 30 :AIIDIVK 1kg0C 124 :TWNGCFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27369 1vraA expands to /projects/compbio/data/pdb/1vra.pdb.gz 1vraA:Skipped atom 42, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 44, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 46, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 48, because occupancy 0.500 <= existing 0.500 in 1vraA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 955, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 957, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 959, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 961, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 986, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 988, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 990, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 992, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 994, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 996, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 998, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 1000, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 1002, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 1032, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 1038, because occupancy 0.500 <= existing 0.500 in 1vraA Skipped atom 1040, because occupancy 0.500 <= existing 0.500 in 1vraA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vraA.28.72 read from T0547.t2k.many.frag # adding 1vraA to template set # found chain 1vraA in template set T0547 28 :KPAIIDIVK 1vraA 61 :QAAPLKVTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27370 # 1kgdA.28.14 read from T0547.t2k.many.frag # found chain 1kgdA in training set Warning: unaligning (T0547)K28 (1kgdA)G744 because T (delta_L) conformation "forbidden" or filtered. T0547 29 :PAIIDIVK 1kgdA 745 :VGRRHIKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27371 # 1evlA.28.21 read from T0547.t2k.many.frag # found chain 1evlA in training set T0547 28 :KPAIIDIVK 1evlA 263 :MVFWHNDGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=27372 1vhyA expands to /projects/compbio/data/pdb/1vhy.pdb.gz 1vhyA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 679, because occupancy 0.350 <= existing 0.650 in 1vhyA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 681, because occupancy 0.350 <= existing 0.650 in 1vhyA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 683, because occupancy 0.350 <= existing 0.650 in 1vhyA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 685, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 778, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 780, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 782, because occupancy 0.350 <= existing 0.650 in 1vhyA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1831, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 1833, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 1835, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 1837, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 1839, because occupancy 0.350 <= existing 0.650 in 1vhyA # 1vhyA.28.18 read from T0547.t2k.many.frag # adding 1vhyA to template set # found chain 1vhyA in template set Warning: unaligning (T0547)K28 (1vhyA)Q17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1vhyA)C18 because Y (epsilon') conformation "forbidden" or filtered. T0547 30 :AIIDIVK 1vhyA 19 :YLSEDAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27373 # 2bzgA.28.31 read from T0547.t2k.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)K28 (2bzgA)G45 because S (epsilon) conformation "forbidden" or filtered. T0547 29 :PAIIDIVK 2bzgA 46 :HQLLKKHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27374 # 1rgxA.28.69 read from T0547.t2k.many.frag # found chain 1rgxA in training set Warning: unaligning (T0547)K28 (1rgxA)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rgxA)T51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I32 (1rgxA)L54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1rgxA)S55 because Y (epsilon') conformation "forbidden" or filtered. T0547 30 :AI 1rgxA 52 :AV T0547 34 :IVK 1rgxA 56 :CSC Number of specific fragments extracted= 2 number of extra gaps= 2 total=27376 # 2fokA.28.127 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P29 (2fokA)F129 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :K 2fokA 128 :S T0547 30 :AIIDIVK 2fokA 130 :VITDVGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27378 # 2b9eA.29.18 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)P29 (2b9eA)T145 because Y (epsilon') conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 2b9eA 146 :CSDDVVDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=27379 # 1j2zA.29.187 read from T0547.t2k.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)I32 (1j2zA)R191 because G (3-10) conformation "forbidden" or filtered. T0547 29 :PAI 1j2zA 188 :AFI T0547 33 :DIVKE 1j2zA 192 :GLNRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=27381 # 1nuyA.29.10 read from T0547.t2k.many.frag # found chain 1nuyA in training set T0547 29 :PAIIDIVKE 1nuyA 1011 :VTLTRFVME Number of specific fragments extracted= 1 number of extra gaps= 0 total=27382 # 1tzyA.29.25 read from T0547.t2k.many.frag # found chain 1tzyA in template set T0547 29 :PAIIDIVKE 1tzyA 25 :FPVGRVHRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27383 # 2aqlA.29.37 read from T0547.t2k.many.frag # found chain 2aqlA in template set Warning: unaligning (T0547)P29 (2aqlA)K188 because D (zeta) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 2aqlA 189 :NVDSILED Number of specific fragments extracted= 1 number of extra gaps= 1 total=27384 # 1m1nA.29.159 read from T0547.t2k.many.frag # found chain 1m1nA in training set T0547 29 :PAIIDIVKE 1m1nA 161 :DDIESVSKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27385 # 2bh4X.29.52 read from T0547.t2k.many.frag # found chain 2bh4X in template set T0547 29 :PAIIDIVKE 2bh4X 53 :FKYGDGILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27386 # 2c5lC.29.29 read from T0547.t2k.many.frag # found chain 2c5lC in template set T0547 29 :PAIIDIVKE 2c5lC 2159 :STAQDVIQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27387 # 1senA.29.32 read from T0547.t2k.many.frag # found chain 1senA in training set Warning: unaligning (T0547)P29 (1senA)R41 because E (beta_S) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1senA 42 :TLEDGKKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27388 # 1m22A.29.10 read from T0547.t2k.many.frag # found chain 1m22A in training set T0547 29 :PAIIDIVKE 1m22A 48 :TDVADLQAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27389 # 1f00I.29.193 read from T0547.t2k.many.frag # found chain 1f00I in template set Warning: unaligning (T0547)P29 (1f00I)V851 because E (beta_S) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1f00I 852 :TYNDAVNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=27390 # 1regX.29.44 read from T0547.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0547)P29 (1regX)Y45 because E (beta_S) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1regX 46 :YIVHFKEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=27391 # 1wb4A.29.89 read from T0547.t2k.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)A30 (1wb4A)K879 because L (left) conformation "forbidden" or filtered. T0547 29 :P 1wb4A 878 :V T0547 31 :IIDIVKE 1wb4A 880 :LQNILDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=27393 # 1c1yB.29.21 read from T0547.t2k.many.frag # found chain 1c1yB in template set T0547 29 :PAIIDIVKE 1c1yB 76 :MSLHDCLMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27394 # 1rmd.29.43 read from T0547.t2k.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)P29 (1rmd)L44 because E (beta_S) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1rmd 45 :FCRICILR Number of specific fragments extracted= 1 number of extra gaps= 1 total=27395 # 1tvxA.29.57 read from T0547.t2k.many.frag # found chain 1tvxA in training set T0547 29 :PAIIDIVKE 1tvxA 73 :PRIKKIVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27396 # 7odcA.29.17 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 29 :PAIIDIVKE 7odcA 18 :FTAKDILDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27397 # 1vraA.29.73 read from T0547.t2k.many.frag # found chain 1vraA in template set T0547 29 :PAIIDIVKE 1vraA 62 :AAPLKVTQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27398 # 1kgdA.29.15 read from T0547.t2k.many.frag # found chain 1kgdA in training set T0547 29 :PAIIDIVKE 1kgdA 745 :VGRRHIKNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27399 # 3bamA.29.5 read from T0547.t2k.many.frag # found chain 3bamA in training set Warning: unaligning (T0547)P29 (3bamA)E6 because E (beta_S) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 3bamA 7 :FITDEAKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27400 # 1ypqA.29.27 read from T0547.t2k.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1ypqA 164 :NWEKSQEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27401 # 1vhyA.29.19 read from T0547.t2k.many.frag # found chain 1vhyA in template set Warning: unaligning (T0547)P29 (1vhyA)C18 because Y (epsilon') conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1vhyA 19 :YLSEDAAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27402 # 1qddA.29.32 read from T0547.t2k.many.frag # found chain 1qddA in training set Warning: unaligning (T0547)P29 (1qddA)E33 because E (beta_S) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1qddA 34 :TWVDADLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=27403 # 2aeuA.29.11 read from T0547.t2k.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)P29 (2aeuA)E12 because G (3-10) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 2aeuA 13 :KARKIILE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27404 # 1tzvA.29.24 read from T0547.t2k.many.frag # found chain 1tzvA in training set Warning: unaligning (T0547)P29 (1tzvA)E25 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1tzvA)D26 because P (beta_P) conformation "forbidden" or filtered. T0547 31 :IIDIVKE 1tzvA 27 :LEQILEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27405 1i7nA expands to /projects/compbio/data/pdb/1i7n.pdb.gz 1i7nA:# 1i7nA.29.84 read from T0547.t2k.many.frag # adding 1i7nA to template set # found chain 1i7nA in template set Warning: unaligning (T0547)P29 (1i7nA)E197 because G (3-10) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1i7nA 198 :DFRHLVIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27406 # 2fokA.29.128 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P29 (2fokA)F129 because E (beta_S) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 2fokA 130 :VITDVGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27407 # 2azeA.29.95 read from T0547.t2k.many.frag # found chain 2azeA in template set Warning: unaligning (T0547)P29 (2azeA)F291 because E (beta_S) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 2azeA 292 :EIHDDIEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27408 1qgoA expands to /projects/compbio/data/pdb/1qgo.pdb.gz 1qgoA:Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 765, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 767, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 769, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 847, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 849, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 851, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 929, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 931, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 933, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 1248, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 1250, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 1252, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 1464, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 1466, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 1468, because occupancy 0.500 <= existing 0.500 in 1qgoA # 1qgoA.29.59 read from T0547.t2k.many.frag # adding 1qgoA to template set # found chain 1qgoA in template set T0547 29 :PAIIDIVKE 1qgoA 60 :DTPLQALQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27409 1yvrA expands to /projects/compbio/data/pdb/1yvr.pdb.gz 1yvrA:# 1yvrA.29.21 read from T0547.t2k.many.frag # adding 1yvrA to template set # found chain 1yvrA in template set T0547 29 :PAIIDIVKE 1yvrA 22 :CYVWQVSDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27410 # 2b9eA.30.19 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 30 :AIIDIVKEL 2b9eA 146 :CSDDVVDYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27411 # 1j2zA.30.188 read from T0547.t2k.many.frag # found chain 1j2zA in template set T0547 30 :AIIDIVKEL 1j2zA 189 :FIRGLNRHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27412 # 1nuyA.30.11 read from T0547.t2k.many.frag # found chain 1nuyA in training set T0547 30 :AIIDIVKEL 1nuyA 1012 :TLTRFVMEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27413 # 1tzyA.30.26 read from T0547.t2k.many.frag # found chain 1tzyA in template set T0547 30 :AIIDIVKEL 1tzyA 26 :PVGRVHRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27414 # 2aqlA.30.38 read from T0547.t2k.many.frag # found chain 2aqlA in template set T0547 30 :AIIDIVKEL 2aqlA 189 :NVDSILEDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27415 # 1m1nA.30.160 read from T0547.t2k.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)A30 (1m1nA)D162 because D (zeta) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1m1nA 163 :IESVSKVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27416 # 2bh4X.30.53 read from T0547.t2k.many.frag # found chain 2bh4X in template set T0547 30 :AIIDIVKEL 2bh4X 54 :KYGDGILEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27417 # 1f00I.30.194 read from T0547.t2k.many.frag # found chain 1f00I in template set T0547 30 :AIIDIVKEL 1f00I 852 :TYNDAVNTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27418 # 1regX.30.45 read from T0547.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0547)D33 (1regX)H49 because P (beta_P) conformation "forbidden" or filtered. T0547 30 :AII 1regX 46 :YIV T0547 34 :IVKEL 1regX 50 :FKEML Number of specific fragments extracted= 2 number of extra gaps= 1 total=27420 # 2aeuA.30.12 read from T0547.t2k.many.frag # found chain 2aeuA in training set T0547 30 :AIIDIVKEL 2aeuA 13 :KARKIILEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27421 # 3bamA.30.6 read from T0547.t2k.many.frag # found chain 3bamA in training set T0547 30 :AIIDIVKEL 3bamA 7 :FITDEAKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27422 # 1tvxA.30.58 read from T0547.t2k.many.frag # found chain 1tvxA in training set T0547 30 :AIIDIVKEL 1tvxA 74 :RIKKIVQKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27423 # 1senA.30.33 read from T0547.t2k.many.frag # found chain 1senA in training set Warning: unaligning (T0547)A30 (1senA)T42 because P (beta_P) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1senA 43 :LEDGKKEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27424 # 1wb4A.30.90 read from T0547.t2k.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)A30 (1wb4A)K879 because L (left) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1wb4A 880 :LQNILDHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27425 # 2c5lC.30.30 read from T0547.t2k.many.frag # found chain 2c5lC in template set Warning: unaligning (T0547)A30 (2c5lC)T2160 because P (beta_P) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 2c5lC 2161 :AQDVIQQT Number of specific fragments extracted= 1 number of extra gaps= 1 total=27426 # 1qgoA.30.60 read from T0547.t2k.many.frag # found chain 1qgoA in template set T0547 30 :AIIDIVKEL 1qgoA 61 :TPLQALQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27427 # 1gvfA.30.4 read from T0547.t2k.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)A30 (1gvfA)S5 because P (beta_P) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1gvfA 6 :TKYLLQDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27428 # 1rmg.30.34 read from T0547.t2k.many.frag # found chain 1rmg in template set Warning: unaligning (T0547)I31 (1rmg)V36 because G (3-10) conformation "forbidden" or filtered. T0547 30 :A 1rmg 35 :D T0547 32 :IDIVKEL 1rmg 37 :GPAITSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27430 # 1iuqA.30.14 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 30 :AIIDIVKEL 1iuqA 16 :ELLSCIKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27431 # 2cx6A.30.32 read from T0547.t2k.many.frag # found chain 2cx6A in template set T0547 30 :AIIDIVKEL 2cx6A 33 :RDLDSLWDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27432 # 1m22A.30.11 read from T0547.t2k.many.frag # found chain 1m22A in training set T0547 30 :AIIDIVKEL 1m22A 49 :DVADLQARM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27433 # 1qddA.30.33 read from T0547.t2k.many.frag # found chain 1qddA in training set T0547 30 :AIIDIVKEL 1qddA 34 :TWVDADLYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27434 # 1vhyA.30.20 read from T0547.t2k.many.frag # found chain 1vhyA in template set T0547 30 :AIIDIVKEL 1vhyA 19 :YLSEDAANH Number of specific fragments extracted= 1 number of extra gaps= 0 total=27435 # 1vraA.30.74 read from T0547.t2k.many.frag # found chain 1vraA in template set T0547 30 :AIIDIVKEL 1vraA 63 :APLKVTQES Number of specific fragments extracted= 1 number of extra gaps= 0 total=27436 # 1c1yB.30.22 read from T0547.t2k.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)V35 (1c1yB)L82 because G (3-10) conformation "forbidden" or filtered. T0547 30 :AIIDI 1c1yB 77 :SLHDC T0547 36 :KEL 1c1yB 83 :MKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27438 # 1tzvA.30.25 read from T0547.t2k.many.frag # found chain 1tzvA in training set T0547 30 :AIIDIVKEL 1tzvA 26 :DLEQILEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27439 # 1ypqA.30.28 read from T0547.t2k.many.frag # found chain 1ypqA in training set T0547 30 :AIIDIVKEL 1ypqA 164 :NWEKSQEKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27440 # 2azeA.30.96 read from T0547.t2k.many.frag # found chain 2azeA in template set T0547 30 :AIIDIVKEL 2azeA 292 :EIHDDIEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27441 # 1rmd.30.44 read from T0547.t2k.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)A30 (1rmd)F45 because E (beta_S) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1rmd 46 :CRICILRC Number of specific fragments extracted= 1 number of extra gaps= 1 total=27442 # 1x38A.30.262 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 30 :AIIDIVKEL 1x38A 263 :ANQDLVTGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27443 # 2b9eA.31.20 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 31 :IIDIVKELR 2b9eA 147 :SDDVVDYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27444 # 1j2zA.31.189 read from T0547.t2k.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)I32 (1j2zA)R191 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1j2zA)G192 because Y (epsilon') conformation "forbidden" or filtered. T0547 31 :I 1j2zA 190 :I T0547 34 :IVKELR 1j2zA 193 :LNRHRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=27446 # 1tzyA.31.27 read from T0547.t2k.many.frag # found chain 1tzyA in template set T0547 31 :IIDIVKELR 1tzyA 27 :VGRVHRLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27447 # 1nuyA.31.12 read from T0547.t2k.many.frag # found chain 1nuyA in training set T0547 31 :IIDIVKELR 1nuyA 1013 :LTRFVMEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27448 # 2aqlA.31.39 read from T0547.t2k.many.frag # found chain 2aqlA in template set T0547 31 :IIDIVKELR 2aqlA 190 :VDSILEDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27449 # 1m1nA.31.161 read from T0547.t2k.many.frag # found chain 1m1nA in training set T0547 31 :IIDIVKELR 1m1nA 163 :IESVSKVKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27450 # 1regX.31.46 read from T0547.t2k.many.frag # found chain 1regX in template set T0547 31 :IIDIVKELR 1regX 47 :IVHFKEMLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27451 # 2bh4X.31.54 read from T0547.t2k.many.frag # found chain 2bh4X in template set T0547 31 :IIDIVKELR 2bh4X 55 :YGDGILEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27452 # 1f00I.31.195 read from T0547.t2k.many.frag # found chain 1f00I in template set T0547 31 :IIDIVKELR 1f00I 853 :YNDAVNTCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27453 # 2aeuA.31.13 read from T0547.t2k.many.frag # found chain 2aeuA in training set T0547 31 :IIDIVKELR 2aeuA 14 :ARKIILEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27454 # 1qgoA.31.61 read from T0547.t2k.many.frag # found chain 1qgoA in template set T0547 31 :IIDIVKELR 1qgoA 62 :PLQALQKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27455 # 1tvxA.31.59 read from T0547.t2k.many.frag # found chain 1tvxA in training set T0547 31 :IIDIVKELR 1tvxA 75 :IKKIVQKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27456 # 1iuqA.31.15 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 31 :IIDIVKELR 1iuqA 17 :LLSCIKKET Number of specific fragments extracted= 1 number of extra gaps= 0 total=27457 # 1jx4A.31.42 read from T0547.t2k.many.frag # found chain 1jx4A in training set T0547 31 :IIDIVKELR 1jx4A 43 :VATANYEAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27458 # 3bamA.31.7 read from T0547.t2k.many.frag # found chain 3bamA in training set T0547 31 :IIDIVKELR 3bamA 8 :ITDEAKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27459 # 1vraA.31.75 read from T0547.t2k.many.frag # found chain 1vraA in template set T0547 31 :IIDIVKELR 1vraA 64 :PLKVTQESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27460 # 2cx6A.31.33 read from T0547.t2k.many.frag # found chain 2cx6A in template set T0547 31 :IIDIVKELR 2cx6A 34 :DLDSLWDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27461 # 1u8bA.31.47 read from T0547.t2k.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)I34 (1u8bA)N57 because Y (epsilon') conformation "forbidden" or filtered. T0547 31 :IID 1u8bA 54 :FYA T0547 35 :VKELR 1u8bA 58 :ASEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27463 # 1qddA.31.34 read from T0547.t2k.many.frag # found chain 1qddA in training set T0547 31 :IIDIVKELR 1qddA 35 :WVDADLYCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27464 # 1wb4A.31.91 read from T0547.t2k.many.frag # found chain 1wb4A in training set T0547 31 :IIDIVKELR 1wb4A 880 :LQNILDHAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27465 # 1m22A.31.12 read from T0547.t2k.many.frag # found chain 1m22A in training set T0547 31 :IIDIVKELR 1m22A 50 :VADLQARMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27466 # 1gvfA.31.5 read from T0547.t2k.many.frag # found chain 1gvfA in training set T0547 31 :IIDIVKELR 1gvfA 6 :TKYLLQDAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27467 # 1senA.31.34 read from T0547.t2k.many.frag # found chain 1senA in training set T0547 31 :IIDIVKELR 1senA 43 :LEDGKKEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27468 # 2c5lC.31.31 read from T0547.t2k.many.frag # found chain 2c5lC in template set T0547 31 :IIDIVKELR 2c5lC 2161 :AQDVIQQTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27469 2f06A expands to /projects/compbio/data/pdb/2f06.pdb.gz 2f06A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 22, because occupancy 0.500 <= existing 0.500 in 2f06A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 26, because occupancy 0.500 <= existing 0.500 in 2f06A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 28, because occupancy 0.500 <= existing 0.500 in 2f06A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 30, because occupancy 0.500 <= existing 0.500 in 2f06A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 32, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 318, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 320, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 348, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 350, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 352, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 354, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 356, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 358, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 360, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 746, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 750, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 752, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 754, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 756, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 758, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 760, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 762, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 777, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 779, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 781, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 785, because occupancy 0.500 <= existing 0.500 in 2f06A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 850, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 854, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 856, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 858, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 860, because occupancy 0.500 <= existing 0.500 in 2f06A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1051, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 1055, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 1057, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 1059, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 1061, because occupancy 0.500 <= existing 0.500 in 2f06A # 2f06A.31.19 read from T0547.t2k.many.frag # adding 2f06A to template set # found chain 2f06A in template set T0547 31 :IIDIVKELR 2f06A 17 :LTEVTEVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27470 # 1x38A.31.263 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 31 :IIDIVKELR 1x38A 264 :NQDLVTGYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27471 # 1wmwA.31.113 read from T0547.t2k.many.frag # found chain 1wmwA in training set T0547 31 :IIDIVKELR 1wmwA 114 :MWGLLAEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27472 # 1tzvA.31.26 read from T0547.t2k.many.frag # found chain 1tzvA in training set T0547 31 :IIDIVKELR 1tzvA 27 :LEQILEEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27473 # 1vefA.31.65 read from T0547.t2k.many.frag # found chain 1vefA in training set T0547 31 :IIDIVKELR 1vefA 66 :VVEAVKRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27474 1woyA expands to /projects/compbio/data/pdb/1woy.pdb.gz 1woyA:# 1woyA.31.52 read from T0547.t2k.many.frag # adding 1woyA to template set # found chain 1woyA in template set Warning: unaligning (T0547)I31 (1woyA)G53 because S (epsilon) conformation "forbidden" or filtered. T0547 32 :IDIVKELR 1woyA 54 :ETVYRAAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=27475 # 2b9eA.32.21 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 32 :IDIVKELRD 2b9eA 148 :DDVVDYFKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27476 # 1j2zA.32.190 read from T0547.t2k.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)D33 (1j2zA)G192 because Y (epsilon') conformation "forbidden" or filtered. T0547 32 :I 1j2zA 191 :R T0547 34 :IVKELRD 1j2zA 193 :LNRHRMR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27478 # 1tzyA.32.28 read from T0547.t2k.many.frag # found chain 1tzyA in template set T0547 32 :IDIVKELRD 1tzyA 28 :GRVHRLLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27479 # 1nuyA.32.13 read from T0547.t2k.many.frag # found chain 1nuyA in training set T0547 32 :IDIVKELRD 1nuyA 1014 :TRFVMEEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27480 # 1m1nA.32.162 read from T0547.t2k.many.frag # found chain 1m1nA in training set T0547 32 :IDIVKELRD 1m1nA 164 :ESVSKVKGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27481 # 2aqlA.32.40 read from T0547.t2k.many.frag # found chain 2aqlA in template set T0547 32 :IDIVKELRD 2aqlA 191 :DSILEDYAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27482 # 2bh4X.32.55 read from T0547.t2k.many.frag # found chain 2bh4X in template set T0547 32 :IDIVKELRD 2bh4X 56 :GDGILEVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27483 # 2aeuA.32.14 read from T0547.t2k.many.frag # found chain 2aeuA in training set T0547 32 :IDIVKELRD 2aeuA 15 :RKIILEILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27484 # 1qgoA.32.62 read from T0547.t2k.many.frag # found chain 1qgoA in template set T0547 32 :IDIVKELRD 1qgoA 63 :LQALQKLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27485 # 1iuqA.32.16 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 32 :IDIVKELRD 1iuqA 18 :LSCIKKETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27486 # 1regX.32.47 read from T0547.t2k.many.frag # found chain 1regX in template set T0547 32 :IDIVKELRD 1regX 48 :VHFKEMLRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27487 # 3bamA.32.8 read from T0547.t2k.many.frag # found chain 3bamA in training set T0547 32 :IDIVKELRD 3bamA 9 :TDEAKELLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27488 # 1jx4A.32.43 read from T0547.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)D33 (1jx4A)T45 because Y (epsilon') conformation "forbidden" or filtered. T0547 32 :I 1jx4A 44 :A T0547 34 :IVKELRD 1jx4A 46 :ANYEARK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27490 # 2cx6A.32.34 read from T0547.t2k.many.frag # found chain 2cx6A in template set T0547 32 :IDIVKELRD 2cx6A 35 :LDSLWDVLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27491 # 1gvfA.32.6 read from T0547.t2k.many.frag # found chain 1gvfA in training set T0547 32 :IDIVKELRD 1gvfA 7 :KYLLQDAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27492 # 1wmwA.32.114 read from T0547.t2k.many.frag # found chain 1wmwA in training set T0547 32 :IDIVKELRD 1wmwA 115 :WGLLAEGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27493 # 1vraA.32.76 read from T0547.t2k.many.frag # found chain 1vraA in template set T0547 32 :IDIVKELRD 1vraA 65 :LKVTQESIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27494 # 1wb4A.32.92 read from T0547.t2k.many.frag # found chain 1wb4A in training set T0547 32 :IDIVKELRD 1wb4A 881 :QNILDHAIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27495 # 1f00I.32.196 read from T0547.t2k.many.frag # found chain 1f00I in template set T0547 32 :IDIVKELRD 1f00I 854 :NDAVNTCKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27496 # 1tvxA.32.60 read from T0547.t2k.many.frag # found chain 1tvxA in training set T0547 32 :IDIVKELRD 1tvxA 76 :KKIVQKKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27497 # 1u8bA.32.48 read from T0547.t2k.many.frag # found chain 1u8bA in template set T0547 32 :IDIVKELRD 1u8bA 55 :YANASEALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27498 # 1x38A.32.264 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 32 :IDIVKELRD 1x38A 265 :QDLVTGYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27499 # 1n0qA.32.14 read from T0547.t2k.many.frag # found chain 1n0qA in training set T0547 32 :IDIVKELRD 1n0qA 15 :LEVVKLLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27500 # 1tzvA.32.27 read from T0547.t2k.many.frag # found chain 1tzvA in training set T0547 32 :IDIVKELRD 1tzvA 28 :EQILEEILD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27501 2ak3A expands to /projects/compbio/data/pdb/2ak3.pdb.gz 2ak3A:# 2ak3A.32.37 read from T0547.t2k.many.frag # adding 2ak3A to template set # found chain 2ak3A in template set T0547 32 :IDIVKELRD 2ak3A 37 :GDLLRDNML Number of specific fragments extracted= 1 number of extra gaps= 0 total=27502 # 1qddA.32.35 read from T0547.t2k.many.frag # found chain 1qddA in training set T0547 32 :IDIVKELRD 1qddA 36 :VDADLYCQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27503 # 1m22A.32.13 read from T0547.t2k.many.frag # found chain 1m22A in training set T0547 32 :IDIVKELRD 1m22A 51 :ADLQARMTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27504 1eyeA expands to /projects/compbio/data/pdb/1eye.pdb.gz 1eyeA:Skipped atom 461, because occupancy 0.300 <= existing 0.700 in 1eyeA Skipped atom 819, because occupancy 0.500 <= existing 0.500 in 1eyeA Skipped atom 821, because occupancy 0.500 <= existing 0.500 in 1eyeA Skipped atom 823, because occupancy 0.500 <= existing 0.500 in 1eyeA Skipped atom 825, because occupancy 0.500 <= existing 0.500 in 1eyeA Skipped atom 827, because occupancy 0.500 <= existing 0.500 in 1eyeA Skipped atom 829, because occupancy 0.500 <= existing 0.500 in 1eyeA Skipped atom 831, because occupancy 0.500 <= existing 0.500 in 1eyeA Skipped atom 833, because occupancy 0.500 <= existing 0.500 in 1eyeA Skipped atom 835, because occupancy 0.500 <= existing 0.500 in 1eyeA Skipped atom 837, because occupancy 0.500 <= existing 0.500 in 1eyeA Skipped atom 839, because occupancy 0.500 <= existing 0.500 in 1eyeA # 1eyeA.32.31 read from T0547.t2k.many.frag # adding 1eyeA to template set # found chain 1eyeA in template set T0547 32 :IDIVKELRD 1eyeA 32 :VKHGLAMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27505 1bh9A expands to /projects/compbio/data/pdb/1bh9.pdb.gz 1bh9A:# 1bh9A.32.3 read from T0547.t2k.many.frag # adding 1bh9A to template set # found chain 1bh9A in template set T0547 32 :IDIVKELRD 1bh9A 34 :KELRCMMYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27506 # 1vhyA.32.22 read from T0547.t2k.many.frag # found chain 1vhyA in template set T0547 32 :IDIVKELRD 1vhyA 21 :SEDAANHVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27507 # 2b9eA.33.22 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 33 :DIVKELRDD 2b9eA 149 :DVVDYFKRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27508 # 1tzyA.33.29 read from T0547.t2k.many.frag # found chain 1tzyA in template set T0547 33 :DIVKELRDD 1tzyA 29 :RVHRLLRKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27509 # 1j2zA.33.191 read from T0547.t2k.many.frag # found chain 1j2zA in template set T0547 33 :DIVKELRDD 1j2zA 192 :GLNRHRMRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27510 # 1nuyA.33.14 read from T0547.t2k.many.frag # found chain 1nuyA in training set T0547 33 :DIVKELRDD 1nuyA 1015 :RFVMEEGRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27511 # 1m1nA.33.163 read from T0547.t2k.many.frag # found chain 1m1nA in training set T0547 33 :DIVKELRDD 1m1nA 165 :SVSKVKGAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27512 # 1qgoA.33.63 read from T0547.t2k.many.frag # found chain 1qgoA in template set T0547 33 :DIVKELRDD 1qgoA 64 :QALQKLAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27513 # 1iuqA.33.17 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 33 :DIVKELRDD 1iuqA 19 :SCIKKETEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27514 # 1gvfA.33.7 read from T0547.t2k.many.frag # found chain 1gvfA in training set T0547 33 :DIVKELRDD 1gvfA 8 :YLLQDAQAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27515 # 2aqlA.33.41 read from T0547.t2k.many.frag # found chain 2aqlA in template set T0547 33 :DIVKELRDD 2aqlA 192 :SILEDYANY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27516 # 1regX.33.48 read from T0547.t2k.many.frag # found chain 1regX in template set T0547 33 :DIVKELRDD 1regX 49 :HFKEMLRMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27517 # 1wmwA.33.115 read from T0547.t2k.many.frag # found chain 1wmwA in training set T0547 33 :DIVKELRDD 1wmwA 116 :GLLAEGLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27518 # 2aeuA.33.15 read from T0547.t2k.many.frag # found chain 2aeuA in training set T0547 33 :DIVKELRDD 2aeuA 16 :KIILEILNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27519 # 1u8bA.33.49 read from T0547.t2k.many.frag # found chain 1u8bA in template set T0547 33 :DIVKELRDD 1u8bA 56 :ANASEALAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27520 # 2cx6A.33.35 read from T0547.t2k.many.frag # found chain 2cx6A in template set T0547 33 :DIVKELRDD 2cx6A 36 :DSLWDVLMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27521 # 2bh4X.33.56 read from T0547.t2k.many.frag # found chain 2bh4X in template set T0547 33 :DIVKELRDD 2bh4X 57 :DGILEVAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27522 # 1vraA.33.77 read from T0547.t2k.many.frag # found chain 1vraA in template set T0547 33 :DIVKELRDD 1vraA 66 :KVTQESIAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27523 # 1n0qA.33.15 read from T0547.t2k.many.frag # found chain 1n0qA in training set T0547 33 :DIVKELRDD 1n0qA 16 :EVVKLLLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27524 # 1x38A.33.265 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 33 :DIVKELRDD 1x38A 266 :DLVTGYLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27525 # 1jx4A.33.44 read from T0547.t2k.many.frag # found chain 1jx4A in training set T0547 33 :DIVKELRDD 1jx4A 45 :TANYEARKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27526 # 1wb4A.33.93 read from T0547.t2k.many.frag # found chain 1wb4A in training set T0547 33 :DIVKELRDD 1wb4A 882 :NILDHAIMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27527 # 3bamA.33.9 read from T0547.t2k.many.frag # found chain 3bamA in training set T0547 33 :DIVKELRDD 3bamA 10 :DEAKELLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27528 # 1f00I.33.197 read from T0547.t2k.many.frag # found chain 1f00I in template set T0547 33 :DIVKELRDD 1f00I 855 :DAVNTCKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27529 1ufaA expands to /projects/compbio/data/pdb/1ufa.pdb.gz 1ufaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ufaA.33.40 read from T0547.t2k.many.frag # adding 1ufaA to template set # found chain 1ufaA in template set T0547 33 :DIVKELRDD 1ufaA 41 :RVLERLRAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27530 # 1woyA.33.54 read from T0547.t2k.many.frag # found chain 1woyA in template set T0547 33 :DIVKELRDD 1woyA 55 :TVYRAAQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27531 # 1eyeA.33.32 read from T0547.t2k.many.frag # found chain 1eyeA in template set T0547 33 :DIVKELRDD 1eyeA 33 :KHGLAMAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27532 # 1o7qA.33.37 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 33 :DIVKELRDD 1o7qA 117 :VLDNYYAKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27533 # 2ak3A.33.38 read from T0547.t2k.many.frag # found chain 2ak3A in template set T0547 33 :DIVKELRDD 2ak3A 38 :DLLRDNMLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27534 # 1tvxA.33.61 read from T0547.t2k.many.frag # found chain 1tvxA in training set Warning: unaligning (T0547)D41 (1tvxA)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 33 :DIVKELRD 1tvxA 77 :KIVQKKLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27535 # 1m22A.33.14 read from T0547.t2k.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)D41 (1m22A)G60 because T (delta_L) conformation "forbidden" or filtered. T0547 33 :DIVKELRD 1m22A 52 :DLQARMTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27536 1a5t expands to /projects/compbio/data/pdb/1a5t.pdb.gz 1a5t:Warning: there is no chain 1a5t will retry with 1a5tA # 1a5t.33.12 read from T0547.t2k.many.frag # adding 1a5t to template set # found chain 1a5t in template set Warning: unaligning (T0547)D41 (1a5t)G21 because T (delta_L) conformation "forbidden" or filtered. T0547 33 :DIVKELRD 1a5t 13 :KLVASYQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27537 # 2b9eA.34.23 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 34 :IVKELRDDG 2b9eA 150 :VVDYFKRQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27538 # 1tzyA.34.30 read from T0547.t2k.many.frag # found chain 1tzyA in template set T0547 34 :IVKELRDDG 1tzyA 30 :VHRLLRKGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27539 # 1nuyA.34.15 read from T0547.t2k.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)G42 (1nuyA)A1024 because P (beta_P) conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1nuyA 1016 :FVMEEGRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27540 # 1wmwA.34.116 read from T0547.t2k.many.frag # found chain 1wmwA in training set T0547 34 :IVKELRDDG 1wmwA 117 :LLAEGLARG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27541 # 1n0qA.34.16 read from T0547.t2k.many.frag # found chain 1n0qA in training set T0547 34 :IVKELRDDG 1n0qA 17 :VVKLLLEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27542 # 1gvfA.34.8 read from T0547.t2k.many.frag # found chain 1gvfA in training set T0547 34 :IVKELRDDG 1gvfA 9 :LLQDAQANG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27543 # 1wb4A.34.94 read from T0547.t2k.many.frag # found chain 1wb4A in training set T0547 34 :IVKELRDDG 1wb4A 883 :ILDHAIMNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27544 # 1iuqA.34.18 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 34 :IVKELRDDG 1iuqA 20 :CIKKETEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27545 # 2cx6A.34.36 read from T0547.t2k.many.frag # found chain 2cx6A in template set T0547 34 :IVKELRDDG 2cx6A 37 :SLWDVLMND Number of specific fragments extracted= 1 number of extra gaps= 0 total=27546 # 1m1nA.34.164 read from T0547.t2k.many.frag # found chain 1m1nA in training set T0547 34 :IVKELRDDG 1m1nA 166 :VSKVKGAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27547 # 1tzvA.34.29 read from T0547.t2k.many.frag # found chain 1tzvA in training set T0547 34 :IVKELRDDG 1tzvA 30 :ILEEILDET Number of specific fragments extracted= 1 number of extra gaps= 0 total=27548 # 1qgoA.34.64 read from T0547.t2k.many.frag # found chain 1qgoA in template set T0547 34 :IVKELRDDG 1qgoA 65 :ALQKLAAQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27549 # 1ufaA.34.41 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 34 :IVKELRDDG 1ufaA 42 :VLERLRAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27550 # 1regX.34.49 read from T0547.t2k.many.frag # found chain 1regX in template set T0547 34 :IVKELRDDG 1regX 50 :FKEMLRMDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27551 # 1j2zA.34.192 read from T0547.t2k.many.frag # found chain 1j2zA in template set T0547 34 :IVKELRDDG 1j2zA 193 :LNRHRMRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27552 # 2aeuA.34.16 read from T0547.t2k.many.frag # found chain 2aeuA in training set T0547 34 :IVKELRDDG 2aeuA 17 :IILEILNEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27553 # 1a5t.34.13 read from T0547.t2k.many.frag # found chain 1a5t in template set T0547 34 :IVKELRDDG 1a5t 14 :LVASYQAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27554 # 1x38A.34.266 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 34 :IVKELRDDG 1x38A 267 :LVTGYLKDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27555 # 1u8bA.34.50 read from T0547.t2k.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)I34 (1u8bA)N57 because Y (epsilon') conformation "forbidden" or filtered. T0547 35 :VKELRDDG 1u8bA 58 :ASEALAAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27556 # 1o7qA.34.38 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 34 :IVKELRDDG 1o7qA 118 :LDNYYAKQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27557 # 1eyeA.34.33 read from T0547.t2k.many.frag # found chain 1eyeA in template set T0547 34 :IVKELRDDG 1eyeA 34 :HGLAMAAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27558 1y44A expands to /projects/compbio/data/pdb/1y44.pdb.gz 1y44A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1y44A.34.74 read from T0547.t2k.many.frag # adding 1y44A to template set # found chain 1y44A in template set T0547 34 :IVKELRDDG 1y44A 75 :LLGSRSFQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27559 2b9sB expands to /projects/compbio/data/pdb/2b9s.pdb.gz 2b9sB:# 2b9sB.34.27 read from T0547.t2k.many.frag # adding 2b9sB to template set # found chain 2b9sB in template set T0547 34 :IVKELRDDG 2b9sB 228 :ICSWAKAQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27560 # 2aqlA.34.42 read from T0547.t2k.many.frag # found chain 2aqlA in template set T0547 34 :IVKELRDD 2aqlA 193 :ILEDYANY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27561 # 1yrbA.34.68 read from T0547.t2k.many.frag # found chain 1yrbA in training set T0547 34 :IVKELRDDG 1yrbA 55 :TVEEIMREG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27562 # 2bh4X.34.57 read from T0547.t2k.many.frag # found chain 2bh4X in template set T0547 34 :IVKELRDDG 2bh4X 58 :GILEVAEKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27563 # 1woyA.34.55 read from T0547.t2k.many.frag # found chain 1woyA in template set T0547 34 :IVKELRDDG 1woyA 56 :VYRAAQAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27564 1lvaA expands to /projects/compbio/data/pdb/1lva.pdb.gz 1lvaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1lvaA.34.36 read from T0547.t2k.many.frag # adding 1lvaA to template set # found chain 1lvaA in template set T0547 34 :IVKELRDDG 1lvaA 413 :LLQSMAAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27565 # 1jx4A.34.45 read from T0547.t2k.many.frag # found chain 1jx4A in training set T0547 34 :IVKELRDDG 1jx4A 46 :ANYEARKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27566 # 2ak3A.34.39 read from T0547.t2k.many.frag # found chain 2ak3A in template set T0547 34 :IVKELRDDG 2ak3A 39 :LLRDNMLRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27567 # 2b9eA.35.24 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 35 :VKELRDDGY 2b9eA 151 :VDYFKRQGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27568 # 1tzyA.35.31 read from T0547.t2k.many.frag # found chain 1tzyA in template set T0547 35 :VKELRDDGY 1tzyA 31 :HRLLRKGNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27569 # 1n0qA.35.17 read from T0547.t2k.many.frag # found chain 1n0qA in training set T0547 35 :VKELRDDGY 1n0qA 18 :VKLLLEAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27570 # 1ufaA.35.42 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 35 :VKELRDDGY 1ufaA 43 :LERLRAEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27571 # 1wmwA.35.117 read from T0547.t2k.many.frag # found chain 1wmwA in training set T0547 35 :VKELRDDGY 1wmwA 118 :LAEGLARGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27572 # 1qgoA.35.65 read from T0547.t2k.many.frag # found chain 1qgoA in template set T0547 35 :VKELRDDGY 1qgoA 66 :LQKLAAQGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27573 # 1wb4A.35.95 read from T0547.t2k.many.frag # found chain 1wb4A in training set T0547 35 :VKELRDDGY 1wb4A 884 :LDHAIMNGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27574 # 1gvfA.35.9 read from T0547.t2k.many.frag # found chain 1gvfA in training set T0547 35 :VKELRDDGY 1gvfA 10 :LQDAQANGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27575 # 1regX.35.50 read from T0547.t2k.many.frag # found chain 1regX in template set T0547 35 :VKELRDDGY 1regX 51 :KEMLRMDGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27576 # 1a5t.35.14 read from T0547.t2k.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)G42 (1a5t)R22 because G (3-10) conformation "forbidden" or filtered. T0547 35 :VKELRDD 1a5t 15 :VASYQAG T0547 43 :Y 1a5t 23 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=27578 1t7lA expands to /projects/compbio/data/pdb/1t7l.pdb.gz 1t7lA:# 1t7lA.35.164 read from T0547.t2k.many.frag # adding 1t7lA to template set # found chain 1t7lA in template set T0547 35 :VKELRDDGY 1t7lA 133 :YLFFKSKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27579 # 1y44A.35.75 read from T0547.t2k.many.frag # found chain 1y44A in template set T0547 35 :VKELRDDGY 1y44A 76 :LGSRSFQGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27580 # 1yrbA.35.69 read from T0547.t2k.many.frag # found chain 1yrbA in training set T0547 35 :VKELRDDGY 1yrbA 56 :VEEIMREGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27581 # 1o7qA.35.39 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 35 :VKELRDDGY 1o7qA 119 :DNYYAKQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27582 # 1nuyA.35.16 read from T0547.t2k.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)G42 (1nuyA)A1024 because P (beta_P) conformation "forbidden" or filtered. T0547 35 :VKELRDD 1nuyA 1017 :VMEEGRK T0547 43 :Y 1nuyA 1025 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=27584 # 1iuqA.35.19 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 35 :VKELRDDGY 1iuqA 21 :IKKETEAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27585 # 1eyeA.35.34 read from T0547.t2k.many.frag # found chain 1eyeA in template set T0547 35 :VKELRDDGY 1eyeA 35 :GLAMAAAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27586 2bg5A expands to /projects/compbio/data/pdb/2bg5.pdb.gz 2bg5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2bg5A.35.31 read from T0547.t2k.many.frag # adding 2bg5A to template set # found chain 2bg5A in template set T0547 35 :VKELRDDGY 2bg5A 281 :VASALANGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27587 # 1x38A.35.267 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 35 :VKELRDDGY 1x38A 268 :VTGYLKDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27588 # 2cx6A.35.37 read from T0547.t2k.many.frag # found chain 2cx6A in template set T0547 35 :VKELRDDGY 2cx6A 38 :LWDVLMNDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27589 # 1woyA.35.56 read from T0547.t2k.many.frag # found chain 1woyA in template set T0547 35 :VKELRDDGY 1woyA 57 :YRAAQAAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27590 # 1u8bA.35.51 read from T0547.t2k.many.frag # found chain 1u8bA in template set T0547 35 :VKELRDDGY 1u8bA 58 :ASEALAAGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27591 # 2b9sB.35.28 read from T0547.t2k.many.frag # found chain 2b9sB in template set T0547 35 :VKELRDDGY 2b9sB 229 :CSWAKAQDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27592 # 1tzvA.35.30 read from T0547.t2k.many.frag # found chain 1tzvA in training set T0547 35 :VKELRDDGY 1tzvA 31 :LEEILDETY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27593 1u9lA expands to /projects/compbio/data/pdb/1u9l.pdb.gz 1u9lA:# 1u9lA.35.18 read from T0547.t2k.many.frag # adding 1u9lA to template set # found chain 1u9lA in template set T0547 35 :VKELRDDGY 1u9lA 370 :ATVLVEEGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27594 # 1m1nA.35.165 read from T0547.t2k.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)Y43 (1m1nA)S175 because L (left) conformation "forbidden" or filtered. T0547 35 :VKELRDDG 1m1nA 167 :SKVKGAEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27595 1q5xA expands to /projects/compbio/data/pdb/1q5x.pdb.gz 1q5xA:# 1q5xA.35.47 read from T0547.t2k.many.frag # adding 1q5xA to template set # found chain 1q5xA in template set Warning: unaligning (T0547)G42 (1q5xA)N55 because P (beta_P) conformation "forbidden" or filtered. T0547 35 :VKELRDD 1q5xA 48 :LYDLLEQ T0547 43 :Y 1q5xA 56 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=27597 # 1gmxA.35.11 read from T0547.t2k.many.frag # found chain 1gmxA in training set T0547 35 :VKELRDDGY 1gmxA 12 :AHQKLQEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27598 1vpqA expands to /projects/compbio/data/pdb/1vpq.pdb.gz 1vpqA:Skipped atom 1424, because occupancy 0.350 <= existing 0.650 in 1vpqA Skipped atom 1426, because occupancy 0.350 <= existing 0.650 in 1vpqA Skipped atom 1428, because occupancy 0.350 <= existing 0.650 in 1vpqA # 1vpqA.35.89 read from T0547.t2k.many.frag # adding 1vpqA to template set # found chain 1vpqA in template set T0547 35 :VKELRDDGY 1vpqA 78 :THVLWKEGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27599 # 2aeuA.35.17 read from T0547.t2k.many.frag # found chain 2aeuA in training set T0547 35 :VKELRDDGY 2aeuA 18 :ILEILNEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27600 # 1n0qA.36.18 read from T0547.t2k.many.frag # found chain 1n0qA in training set T0547 36 :KELRDDGYK 1n0qA 19 :KLLLEAGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27601 # 1ufaA.36.43 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 36 :KELRDDGYK 1ufaA 44 :ERLRAEGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27602 # 1wb4A.36.96 read from T0547.t2k.many.frag # found chain 1wb4A in training set T0547 36 :KELRDDGYK 1wb4A 885 :DHAIMNGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27603 # 1gvfA.36.10 read from T0547.t2k.many.frag # found chain 1gvfA in training set T0547 36 :KELRDDGYK 1gvfA 11 :QDAQANGYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27604 # 2b9eA.36.25 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 36 :KELRDDGYK 2b9eA 152 :DYFKRQGFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27605 # 1yrbA.36.70 read from T0547.t2k.many.frag # found chain 1yrbA in training set T0547 36 :KELRDDGYK 1yrbA 57 :EEIMREGYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27606 # 1y44A.36.76 read from T0547.t2k.many.frag # found chain 1y44A in template set T0547 36 :KELRDDGYK 1y44A 77 :GSRSFQGGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27607 # 1qgoA.36.66 read from T0547.t2k.many.frag # found chain 1qgoA in template set T0547 36 :KELRDDGYK 1qgoA 67 :QKLAAQGYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27608 # 1t7lA.36.165 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 36 :KELRDDGYK 1t7lA 134 :LFFKSKGIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27609 # 1tzyA.36.32 read from T0547.t2k.many.frag # found chain 1tzyA in template set Warning: unaligning (T0547)K44 (1tzyA)A40 because Y (epsilon') conformation "forbidden" or filtered. T0547 36 :KELRDDGY 1tzyA 32 :RLLRKGNY Number of specific fragments extracted= 1 number of extra gaps= 1 total=27610 # 2bg5A.36.32 read from T0547.t2k.many.frag # found chain 2bg5A in template set T0547 36 :KELRDDGYK 2bg5A 282 :ASALANGAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27611 # 1x38A.36.268 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 36 :KELRDDGYK 1x38A 269 :TGYLKDTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27612 # 1u9lA.36.19 read from T0547.t2k.many.frag # found chain 1u9lA in template set T0547 36 :KELRDDGYK 1u9lA 371 :TVLVEEGFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27613 # 1regX.36.51 read from T0547.t2k.many.frag # found chain 1regX in template set T0547 36 :KELRDDGYK 1regX 52 :EMLRMDGRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27614 # 1a5t.36.15 read from T0547.t2k.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)D41 (1a5t)G21 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G42 (1a5t)R22 because G (3-10) conformation "forbidden" or filtered. T0547 36 :KELRD 1a5t 16 :ASYQA T0547 43 :YK 1a5t 23 :GH Number of specific fragments extracted= 2 number of extra gaps= 1 total=27616 # 1o7qA.36.40 read from T0547.t2k.many.frag # found chain 1o7qA in training set Warning: unaligning (T0547)K44 (1o7qA)T128 because E (beta_S) conformation "forbidden" or filtered. T0547 36 :KELRDDGY 1o7qA 120 :NYYAKQKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27617 # 1gmxA.36.12 read from T0547.t2k.many.frag # found chain 1gmxA in training set T0547 36 :KELRDDGYK 1gmxA 13 :HQKLQEKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27618 # 2bzgA.36.39 read from T0547.t2k.many.frag # found chain 2bzgA in template set T0547 36 :KELRDDGYK 2bzgA 53 :LDTFLKGKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27619 # 1vpqA.36.90 read from T0547.t2k.many.frag # found chain 1vpqA in template set T0547 36 :KELRDDGYK 1vpqA 79 :HVLWKEGKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27620 # 1kkoA.36.181 read from T0547.t2k.many.frag # found chain 1kkoA in training set T0547 36 :KELRDDGYK 1kkoA 182 :DKMILKGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27621 # 1woyA.36.57 read from T0547.t2k.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)K44 (1woyA)D66 because P (beta_P) conformation "forbidden" or filtered. T0547 36 :KELRDDGY 1woyA 58 :RAAQAAGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27622 # 1eyeA.36.35 read from T0547.t2k.many.frag # found chain 1eyeA in template set T0547 36 :KELRDDGYK 1eyeA 36 :LAMAAAGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27623 # 2b9sB.36.29 read from T0547.t2k.many.frag # found chain 2b9sB in template set T0547 36 :KELRDDGYK 2b9sB 230 :SWAKAQDVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27624 # 1q5xA.36.48 read from T0547.t2k.many.frag # found chain 1q5xA in template set T0547 36 :KELRDDGYK 1q5xA 49 :YDLLEQNGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27625 # 1wmwA.36.118 read from T0547.t2k.many.frag # found chain 1wmwA in training set T0547 36 :KELRDDGYK 1wmwA 119 :AEGLARGLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27626 1yt8A expands to /projects/compbio/data/pdb/1yt8.pdb.gz 1yt8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1yt8A.36.137 read from T0547.t2k.many.frag # adding 1yt8A to template set # found chain 1yt8A in template set T0547 36 :KELRDDGYK 1yt8A 138 :QALLDARAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27627 # 2cx6A.36.38 read from T0547.t2k.many.frag # found chain 2cx6A in template set T0547 36 :KELRDDGYK 2cx6A 39 :WDVLMNDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27628 # 1nuyA.36.17 read from T0547.t2k.many.frag # found chain 1nuyA in training set T0547 36 :KELRDDGYK 1nuyA 1018 :MEEGRKARG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27629 # 1jx4A.36.47 read from T0547.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)K44 (1jx4A)K56 because Y (epsilon') conformation "forbidden" or filtered. T0547 36 :KELRDDGY 1jx4A 48 :YEARKFGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27630 2af4C expands to /projects/compbio/data/pdb/2af4.pdb.gz 2af4C:Bad short name: OD for alphabet: pdb_atoms # 2af4C.36.33 read from T0547.t2k.many.frag # adding 2af4C to template set # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 T0547 36 :KELRDDGY 2af4C 34 :AKILERGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27631 # 1ufaA.37.44 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 37 :ELRDDGYKG 1ufaA 45 :RLRAEGVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27632 # 1y44A.37.77 read from T0547.t2k.many.frag # found chain 1y44A in template set Warning: unaligning (T0547)G45 (1y44A)D86 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1y44A 78 :SRSFQGGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27633 # 1gvfA.37.11 read from T0547.t2k.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)K44 (1gvfA)A19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1gvfA)V20 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDDGY 1gvfA 12 :DAQANGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=27634 # 1n0qA.37.19 read from T0547.t2k.many.frag # found chain 1n0qA in training set Warning: unaligning (T0547)K44 (1n0qA)D27 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDDGY 1n0qA 20 :LLLEAGA T0547 45 :G 1n0qA 28 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27636 # 1wb4A.37.97 read from T0547.t2k.many.frag # found chain 1wb4A in training set T0547 37 :ELRDDGYKG 1wb4A 886 :HAIMNGELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27637 # 1t7lA.37.166 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 37 :ELRDDGYKG 1t7lA 135 :FFKSKGIET Number of specific fragments extracted= 1 number of extra gaps= 0 total=27638 # 2b9eA.37.26 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 37 :ELRDDGYKG 2b9eA 153 :YFKRQGFSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27639 # 2bg5A.37.33 read from T0547.t2k.many.frag # found chain 2bg5A in template set T0547 37 :ELRDDGYKG 2bg5A 283 :SALANGAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27640 # 1yrbA.37.71 read from T0547.t2k.many.frag # found chain 1yrbA in training set Warning: unaligning (T0547)K44 (1yrbA)G65 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDDGY 1yrbA 58 :EIMREGY T0547 45 :G 1yrbA 66 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=27642 # 1qgoA.37.67 read from T0547.t2k.many.frag # found chain 1qgoA in template set Warning: unaligning (T0547)G45 (1qgoA)D76 because E (beta_S) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1qgoA 68 :KLAAQGYQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=27643 # 1regX.37.52 read from T0547.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0547)K44 (1regX)Q60 because N (gamma') conformation "forbidden" or filtered. T0547 37 :ELRDDGY 1regX 53 :MLRMDGR T0547 45 :G 1regX 61 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27645 # 1vflA.37.28 read from T0547.t2k.many.frag # found chain 1vflA in training set T0547 37 :ELRDDGYKG 1vflA 27 :YGKRRGIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27646 # 1kkoA.37.182 read from T0547.t2k.many.frag # found chain 1kkoA in training set T0547 37 :ELRDDGYKG 1kkoA 183 :KMILKGVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27647 # 1o7qA.37.41 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 37 :ELRDDGYKG 1o7qA 121 :YYAKQKITV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27648 # 1a5t.37.16 read from T0547.t2k.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)D41 (1a5t)G21 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (1a5t)H24 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRD 1a5t 17 :SYQA T0547 42 :GY 1a5t 22 :RG T0547 45 :G 1a5t 25 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=27651 # 1yt8A.37.138 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G45 (1yt8A)A147 because Y (epsilon') conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1yt8A 139 :ALLDARAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27652 # 1vpqA.37.91 read from T0547.t2k.many.frag # found chain 1vpqA in template set Warning: unaligning (T0547)K44 (1vpqA)D87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1vpqA)P88 because G (3-10) conformation "forbidden" or filtered. T0547 37 :ELRDDGY 1vpqA 80 :VLWKEGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27653 # 1tzyA.37.33 read from T0547.t2k.many.frag # found chain 1tzyA in template set Warning: unaligning (T0547)K44 (1tzyA)A40 because Y (epsilon') conformation "forbidden" or filtered. T0547 37 :ELRDDGY 1tzyA 33 :LLRKGNY T0547 45 :G 1tzyA 41 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=27655 # 1x38A.37.269 read from T0547.t2k.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)G45 (1x38A)F278 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1x38A 270 :GYLKDTLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27656 # 1gmxA.37.13 read from T0547.t2k.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)G45 (1gmxA)V22 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1gmxA 14 :QKLQEKEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27657 # 1u9lA.37.20 read from T0547.t2k.many.frag # found chain 1u9lA in template set Warning: unaligning (T0547)G45 (1u9lA)T380 because E (beta_S) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1u9lA 372 :VLVEEGFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=27658 # 1gu7A.37.128 read from T0547.t2k.many.frag # found chain 1gu7A in training set T0547 37 :ELRDDGYKG 1gu7A 151 :QSKANGKPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27659 # 2b9sB.37.30 read from T0547.t2k.many.frag # found chain 2b9sB in template set T0547 37 :ELRDDGYKG 2b9sB 231 :WAKAQDVPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27660 # 1eyeA.37.36 read from T0547.t2k.many.frag # found chain 1eyeA in template set T0547 37 :ELRDDGYKG 1eyeA 37 :AMAAAGAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27661 # 2bzgA.37.40 read from T0547.t2k.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)D41 (2bzgA)K58 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRD 2bzgA 54 :DTFL T0547 42 :GYKG 2bzgA 59 :GKSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27663 1r2mA expands to /projects/compbio/data/pdb/1r2m.pdb.gz 1r2mA:Skipped atom 232, because occupancy 0.500 <= existing 0.500 in 1r2mA Skipped atom 234, because occupancy 0.500 <= existing 0.500 in 1r2mA Skipped atom 236, because occupancy 0.500 <= existing 0.500 in 1r2mA Skipped atom 238, because occupancy 0.500 <= existing 0.500 in 1r2mA Skipped atom 240, because occupancy 0.500 <= existing 0.500 in 1r2mA Skipped atom 242, because occupancy 0.500 <= existing 0.500 in 1r2mA Skipped atom 244, because occupancy 0.500 <= existing 0.500 in 1r2mA # 1r2mA.37.40 read from T0547.t2k.many.frag # adding 1r2mA to template set # found chain 1r2mA in template set Warning: unaligning (T0547)Y43 (1r2mA)G47 because L (left) conformation "forbidden" or filtered. T0547 37 :ELRDDG 1r2mA 41 :AHCASK T0547 44 :KG 1r2mA 48 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27665 # 1o66A.37.10 read from T0547.t2k.many.frag # found chain 1o66A in training set Warning: unaligning (T0547)G45 (1o66A)I17 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1o66A 9 :KMKAAGEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27666 2av4A expands to /projects/compbio/data/pdb/2av4.pdb.gz 2av4A:# 2av4A.37.35 read from T0547.t2k.many.frag # adding 2av4A to template set # found chain 2av4A in template set Warning: unaligning (T0547)G42 (2av4A)E39 because N (gamma') conformation "forbidden" or filtered. T0547 37 :ELRDD 2av4A 34 :QAIVN T0547 43 :YKG 2av4A 40 :DER Number of specific fragments extracted= 2 number of extra gaps= 1 total=27668 1jeyA expands to /projects/compbio/data/pdb/1jey.pdb.gz 1jeyA:# 1jeyA.37.72 read from T0547.t2k.many.frag # adding 1jeyA to template set # found chain 1jeyA in template set T0547 37 :ELRDDGYKG 1jeyA 73 :SKIISSDRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27669 # 2af4C.37.34 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 T0547 37 :ELRDDGY 2af4C 35 :KILERGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27670 # 1ufaA.38.45 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 38 :LRDDGYKGP 1ufaA 46 :LRAEGVEAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27671 # 1gvfA.38.12 read from T0547.t2k.many.frag # found chain 1gvfA in training set T0547 38 :LRDDGYKGP 1gvfA 13 :AQANGYAVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27672 # 1y44A.38.78 read from T0547.t2k.many.frag # found chain 1y44A in template set T0547 38 :LRDDGYKGP 1y44A 79 :RSFQGGEDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27673 # 1t7lA.38.167 read from T0547.t2k.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1t7lA 136 :FKSKGIET Number of specific fragments extracted= 1 number of extra gaps= 1 total=27674 # 2b9eA.38.27 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)P46 (2b9eA)Q162 because G (3-10) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 2b9eA 154 :FKRQGFSY Number of specific fragments extracted= 1 number of extra gaps= 1 total=27675 # 1wb4A.38.98 read from T0547.t2k.many.frag # found chain 1wb4A in training set T0547 38 :LRDDGYKGP 1wb4A 887 :AIMNGELEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27676 # 2bg5A.38.34 read from T0547.t2k.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)K44 (2bg5A)E290 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2bg5A)V292 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGY 2bg5A 284 :ALANGA T0547 45 :G 2bg5A 291 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=27678 # 1n0qA.38.20 read from T0547.t2k.many.frag # found chain 1n0qA in training set Warning: unaligning (T0547)P46 (1n0qA)N29 because G (3-10) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1n0qA 21 :LLEAGADV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27679 # 1vflA.38.29 read from T0547.t2k.many.frag # found chain 1vflA in training set T0547 38 :LRDDGYKGP 1vflA 28 :GKRRGIALP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27680 # 1o7qA.38.42 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 38 :LRDDGYKGP 1o7qA 122 :YAKQKITVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27681 # 1kkoA.38.183 read from T0547.t2k.many.frag # found chain 1kkoA in training set Warning: unaligning (T0547)G45 (1kkoA)V191 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1kkoA)L192 because Y (epsilon') conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1kkoA 184 :MILKGVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=27682 # 1a5t.38.17 read from T0547.t2k.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)D41 (1a5t)G21 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G42 (1a5t)R22 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (1a5t)H24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 38 :LRD 1a5t 18 :YQA T0547 43 :Y 1a5t 23 :G T0547 45 :G 1a5t 25 :H Number of specific fragments extracted= 3 number of extra gaps= 3 total=27685 # 1qgoA.38.68 read from T0547.t2k.many.frag # found chain 1qgoA in template set Warning: unaligning (T0547)P46 (1qgoA)V77 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1qgoA 69 :LAAQGYQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=27686 # 2av4A.38.36 read from T0547.t2k.many.frag # found chain 2av4A in template set T0547 38 :LRDDGYKGP 2av4A 35 :AIVNEDERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27687 # 1r2mA.38.41 read from T0547.t2k.many.frag # found chain 1r2mA in template set Warning: unaligning (T0547)Y43 (1r2mA)G47 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (1r2mA)S48 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDG 1r2mA 42 :HCASK T0547 45 :GP 1r2mA 49 :KP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27689 1onrA expands to /projects/compbio/data/pdb/1onr.pdb.gz 1onrA:# 1onrA.38.82 read from T0547.t2k.many.frag # adding 1onrA to template set # found chain 1onrA in template set Warning: unaligning (T0547)P46 (1onrA)R92 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1onrA 84 :EILKLVPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27690 # 2bzgA.38.41 read from T0547.t2k.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)K44 (2bzgA)S61 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGY 2bzgA 55 :TFLKGK T0547 45 :GP 2bzgA 62 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27692 # 1regX.38.53 read from T0547.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0547)P46 (1regX)E62 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1regX 54 :LRMDGRQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27693 # 1x38A.38.270 read from T0547.t2k.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)G45 (1x38A)F278 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1x38A)K279 because G (3-10) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1x38A 271 :YLKDTLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27694 # 1o66A.38.11 read from T0547.t2k.many.frag # found chain 1o66A in training set Warning: unaligning (T0547)G45 (1o66A)I17 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1o66A)A18 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1o66A 10 :MKAAGEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27695 # 2af4C.38.35 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGY 2af4C 36 :ILERGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27696 # 1gmxA.38.14 read from T0547.t2k.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)K44 (1gmxA)A21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1gmxA)V22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGY 1gmxA 15 :KLQEKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27697 # 1yt8A.38.139 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)P46 (1yt8A)V148 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1yt8A 140 :LLDARAEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27698 # 1jeyA.38.73 read from T0547.t2k.many.frag # found chain 1jeyA in template set Warning: unaligning (T0547)G45 (1jeyA)D81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1jeyA)L82 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1jeyA 74 :KIISSDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=27699 # 1xd3A.38.39 read from T0547.t2k.many.frag # found chain 1xd3A in training set T0547 38 :LRDDGYKGP 1xd3A 40 :ELLSMVPRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27700 # 1gu7A.38.129 read from T0547.t2k.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)P46 (1gu7A)G160 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1gu7A 152 :SKANGKPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27701 # 1eyeA.38.37 read from T0547.t2k.many.frag # found chain 1eyeA in template set Warning: unaligning (T0547)P46 (1eyeA)V46 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1eyeA 38 :MAAAGAGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27702 2bmfA expands to /projects/compbio/data/pdb/2bmf.pdb.gz 2bmfA:# 2bmfA.38.43 read from T0547.t2k.many.frag # adding 2bmfA to template set # found chain 2bmfA in template set Warning: unaligning (T0547)K44 (2bmfA)R217 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (2bmfA)T218 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2bmfA)L219 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGY 2bmfA 211 :AIKRGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27703 2b1eA expands to /projects/compbio/data/pdb/2b1e.pdb.gz 2b1eA:# 2b1eA.38.104 read from T0547.t2k.many.frag # adding 2b1eA to template set # found chain 2b1eA in template set Warning: unaligning (T0547)G45 (2b1eA)F171 because P (beta_P) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 2b1eA 164 :NITKKMP T0547 46 :P 2b1eA 172 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=27705 # 1w2wB.38.25 read from T0547.t2k.many.frag # found chain 1w2wB in training set Warning: unaligning (T0547)G45 (1w2wB)S253 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1w2wB)T254 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1w2wB 246 :LVYDKIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27706 # 1ufaA.39.46 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 39 :RDDGYKGPL 1ufaA 47 :RAEGVEAPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27707 # 1t7lA.39.168 read from T0547.t2k.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)K44 (1t7lA)E142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 39 :RDDGY 1t7lA 137 :KSKGI T0547 45 :G 1t7lA 143 :T T0547 47 :L 1t7lA 145 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=27710 # 1gvfA.39.13 read from T0547.t2k.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)G45 (1gvfA)V20 because P (beta_P) conformation "forbidden" or filtered. T0547 39 :RDDGYK 1gvfA 14 :QANGYA T0547 46 :PL 1gvfA 21 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27712 # 1y44A.39.79 read from T0547.t2k.many.frag # found chain 1y44A in template set T0547 39 :RDDGYKGPL 1y44A 80 :SFQGGEDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27713 # 1wb4A.39.99 read from T0547.t2k.many.frag # found chain 1wb4A in training set T0547 39 :RDDGYKGPL 1wb4A 888 :IMNGELEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27714 # 1a5t.39.18 read from T0547.t2k.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)G42 (1a5t)R22 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 39 :RDD 1a5t 19 :QAG T0547 43 :YKG 1a5t 23 :GHH T0547 47 :L 1a5t 27 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=27717 # 1gmxA.39.15 read from T0547.t2k.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)G45 (1gmxA)V22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYK 1gmxA 16 :LQEKEA T0547 47 :L 1gmxA 24 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27719 # 2b9eA.39.28 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)G45 (2b9eA)Y161 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2b9eA)Q162 because G (3-10) conformation "forbidden" or filtered. T0547 39 :RDDGYK 2b9eA 155 :KRQGFS T0547 47 :L 2b9eA 163 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=27721 # 2bg5A.39.35 read from T0547.t2k.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)P46 (2bg5A)V292 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 2bg5A 285 :LANGAEG T0547 47 :L 2bg5A 293 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=27723 # 2af4C.39.36 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGY 2af4C 37 :LERGI T0547 47 :L 2af4C 45 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27725 # 1o7qA.39.43 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 39 :RDDGYKGPL 1o7qA 123 :AKQKITVGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27726 # 1kkoA.39.184 read from T0547.t2k.many.frag # found chain 1kkoA in training set Warning: unaligning (T0547)P46 (1kkoA)L192 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (1kkoA)P193 because C (cis) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1kkoA 185 :ILKGVDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27727 # 1tuoA.39.42 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)G42 (1tuoA)R46 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y43 (1tuoA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 39 :RDD 1tuoA 43 :LLE T0547 44 :KGPL 1tuoA 48 :GGLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27729 # 1o66A.39.12 read from T0547.t2k.many.frag # found chain 1o66A in training set Warning: unaligning (T0547)P46 (1o66A)A18 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1o66A 11 :KAAGEKI T0547 47 :L 1o66A 19 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=27731 # 1qgoA.39.69 read from T0547.t2k.many.frag # found chain 1qgoA in template set Warning: unaligning (T0547)G45 (1qgoA)D76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1qgoA)V77 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYK 1qgoA 70 :AAQGYQ T0547 47 :L 1qgoA 78 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=27733 # 1r2mA.39.42 read from T0547.t2k.many.frag # found chain 1r2mA in template set Warning: unaligning (T0547)G45 (1r2mA)K49 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYK 1r2mA 43 :CASKGS T0547 46 :PL 1r2mA 50 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27735 # 1qwnA.39.117 read from T0547.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)P46 (1qwnA)K125 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1qwnA 118 :LHDNPEM T0547 47 :L 1qwnA 126 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=27737 # 1w2fA.39.65 read from T0547.t2k.many.frag # found chain 1w2fA in training set T0547 39 :RDDGYKGPL 1w2fA 251 :LLDGFDGPC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27738 # 2av4A.39.37 read from T0547.t2k.many.frag # found chain 2av4A in template set Warning: unaligning (T0547)G42 (2av4A)E39 because N (gamma') conformation "forbidden" or filtered. T0547 39 :RDD 2av4A 36 :IVN T0547 43 :YKGPL 2av4A 40 :DERLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27740 # 1yt8A.39.140 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G45 (1yt8A)A147 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1yt8A)V148 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYK 1yt8A 141 :LDARAE T0547 47 :L 1yt8A 149 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=27742 # 1vflA.39.30 read from T0547.t2k.many.frag # found chain 1vflA in training set T0547 39 :RDDGYKGPL 1vflA 29 :KRRGIALPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27743 # 1tuoA.39.43 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)P46 (1tuoA)V51 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1tuoA 44 :LERGGGL T0547 47 :L 1tuoA 52 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27745 # 1jeyA.39.74 read from T0547.t2k.many.frag # found chain 1jeyA in template set Warning: unaligning (T0547)K44 (1jeyA)R80 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1jeyA)L82 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGY 1jeyA 75 :IISSD T0547 45 :G 1jeyA 81 :D T0547 47 :L 1jeyA 83 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=27748 # 2bmfA.39.44 read from T0547.t2k.many.frag # found chain 2bmfA in template set Warning: unaligning (T0547)P46 (2bmfA)L219 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 2bmfA 212 :IKRGLRT T0547 47 :L 2bmfA 220 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=27750 # 1x38A.39.271 read from T0547.t2k.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)G45 (1x38A)F278 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1x38A)K279 because G (3-10) conformation "forbidden" or filtered. T0547 39 :RDDGYK 1x38A 272 :LKDTLK T0547 47 :L 1x38A 280 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=27752 # 2bzgA.39.42 read from T0547.t2k.many.frag # found chain 2bzgA in template set T0547 39 :RDDGYKGPL 2bzgA 56 :FLKGKSGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27753 # 1senA.39.42 read from T0547.t2k.many.frag # found chain 1senA in training set Warning: unaligning (T0547)P46 (1senA)M58 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1senA 51 :AASGLPL T0547 47 :L 1senA 59 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27755 # 1thfD.39.39 read from T0547.t2k.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)P46 (1thfD)L47 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1thfD 40 :SEIGIDE T0547 47 :L 1thfD 48 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27757 # 1w2wB.39.26 read from T0547.t2k.many.frag # found chain 1w2wB in training set Warning: unaligning (T0547)P46 (1w2wB)T254 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1w2wB 247 :VYDKIPS T0547 47 :L 1w2wB 255 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=27759 # 1gu7A.39.130 read from T0547.t2k.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)P46 (1gu7A)G160 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1gu7A 153 :KANGKPN T0547 47 :L 1gu7A 161 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=27761 # 1t7lA.40.169 read from T0547.t2k.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1t7lA 138 :SKGIET T0547 47 :LL 1t7lA 145 :PW Number of specific fragments extracted= 2 number of extra gaps= 1 total=27763 # 1ufaA.40.47 read from T0547.t2k.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)L47 (1ufaA)F55 because Y (epsilon') conformation "forbidden" or filtered. T0547 40 :DDGYKGP 1ufaA 48 :AEGVEAP T0547 48 :L 1ufaA 56 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=27765 # 1gvfA.40.14 read from T0547.t2k.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)K44 (1gvfA)A19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1gvfA)V20 because P (beta_P) conformation "forbidden" or filtered. T0547 40 :DDGY 1gvfA 15 :ANGY T0547 46 :PLL 1gvfA 21 :PAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27767 # 1a5t.40.19 read from T0547.t2k.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1a5t 20 :AGRGHH T0547 47 :LL 1a5t 27 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27769 # 1w2fA.40.66 read from T0547.t2k.many.frag # found chain 1w2fA in training set T0547 40 :DDGYKGPLL 1w2fA 252 :LDGFDGPCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27770 # 1wb4A.40.100 read from T0547.t2k.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)G45 (1wb4A)E894 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (1wb4A)L896 because Y (epsilon') conformation "forbidden" or filtered. T0547 40 :DDGYK 1wb4A 889 :MNGEL T0547 46 :P 1wb4A 895 :P T0547 48 :L 1wb4A 897 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=27773 # 1y44A.40.80 read from T0547.t2k.many.frag # found chain 1y44A in template set T0547 40 :DDGYKGPLL 1y44A 81 :FQGGEDELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27774 # 2bg5A.40.36 read from T0547.t2k.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)G45 (2bg5A)G291 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2bg5A)V292 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYK 2bg5A 286 :ANGAE T0547 47 :LL 2bg5A 293 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27776 # 1gmxA.40.16 read from T0547.t2k.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)G45 (1gmxA)V22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYK 1gmxA 17 :QEKEA T0547 47 :LL 1gmxA 24 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27778 # 2af4C.40.37 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGY 2af4C 38 :ERGI T0547 47 :LL 2af4C 45 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27780 # 1tuoA.40.43 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)G42 (1tuoA)R46 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1tuoA)G49 because S (epsilon) conformation "forbidden" or filtered. T0547 40 :DD 1tuoA 44 :LE T0547 43 :YK 1tuoA 47 :GG T0547 46 :PLL 1tuoA 50 :LVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=27783 1y88A expands to /projects/compbio/data/pdb/1y88.pdb.gz 1y88A:Skipped atom 530, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 534, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 536, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 538, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 540, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 542, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 544, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 546, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 548, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 581, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 585, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 587, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 589, because occupancy 0.500 <= existing 0.500 in 1y88A Skipped atom 591, because occupancy 0.500 <= existing 0.500 in 1y88A # 1y88A.40.90 read from T0547.t2k.many.frag # adding 1y88A to template set # found chain 1y88A in template set Warning: unaligning (T0547)G45 (1y88A)Q83 because Y (epsilon') conformation "forbidden" or filtered. T0547 40 :DDGYK 1y88A 78 :KHGFT T0547 46 :PLL 1y88A 84 :PWI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27785 # 1of8A.40.62 read from T0547.t2k.many.frag # found chain 1of8A in training set Warning: unaligning (T0547)K44 (1of8A)D67 because G (3-10) conformation "forbidden" or filtered. T0547 40 :DDGY 1of8A 63 :TGKD T0547 45 :GPLL 1of8A 68 :RVLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27787 # 1thfD.40.40 read from T0547.t2k.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)P46 (1thfD)L47 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1thfD 41 :EIGIDE T0547 47 :LL 1thfD 48 :VF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27789 # 1qgoA.40.70 read from T0547.t2k.many.frag # found chain 1qgoA in template set Warning: unaligning (T0547)P46 (1qgoA)V77 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1qgoA 71 :AQGYQD T0547 47 :LL 1qgoA 78 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27791 # 1tuoA.40.44 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)K44 (1tuoA)G49 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1tuoA)V51 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGY 1tuoA 45 :ERGG T0547 45 :G 1tuoA 50 :L T0547 47 :LL 1tuoA 52 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=27794 # 2av4A.40.38 read from T0547.t2k.many.frag # found chain 2av4A in template set Warning: unaligning (T0547)G45 (2av4A)R42 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYK 2av4A 37 :VNEDE T0547 46 :PLL 2av4A 43 :LVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27796 # 1jeyA.40.75 read from T0547.t2k.many.frag # found chain 1jeyA in template set Warning: unaligning (T0547)P46 (1jeyA)L82 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1jeyA 76 :ISSDRD T0547 47 :LL 1jeyA 83 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27798 # 1r2mA.40.43 read from T0547.t2k.many.frag # found chain 1r2mA in template set Warning: unaligning (T0547)Y43 (1r2mA)G47 because L (left) conformation "forbidden" or filtered. T0547 40 :DDG 1r2mA 44 :ASK T0547 44 :KGPLL 1r2mA 48 :SKPLC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27800 1u5hA expands to /projects/compbio/data/pdb/1u5h.pdb.gz 1u5hA:# 1u5hA.40.2 read from T0547.t2k.many.frag # adding 1u5hA to template set # found chain 1u5hA in template set Warning: unaligning (T0547)K44 (1u5hA)G7 because P (beta_P) conformation "forbidden" or filtered. T0547 40 :DDGY 1u5hA 3 :LRAA T0547 45 :GPLL 1u5hA 8 :PGWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27802 # 1qwnA.40.118 read from T0547.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G42 (1qwnA)N121 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1qwnA)K125 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DD 1qwnA 119 :HD T0547 43 :YKG 1qwnA 122 :PEM T0547 47 :LL 1qwnA 126 :FI Number of specific fragments extracted= 3 number of extra gaps= 2 total=27805 # 1o66A.40.13 read from T0547.t2k.many.frag # found chain 1o66A in training set Warning: unaligning (T0547)K44 (1o66A)K16 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1o66A)I17 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1o66A)A18 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGY 1o66A 12 :AAGE T0547 47 :LL 1o66A 19 :ML Number of specific fragments extracted= 2 number of extra gaps= 1 total=27807 # 1knwA.40.20 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Y43 (1knwA)F24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (1knwA)G25 because S (epsilon) conformation "forbidden" or filtered. T0547 40 :DDG 1knwA 21 :PAE T0547 45 :GPLL 1knwA 26 :CPVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=27809 # 1q5xA.40.52 read from T0547.t2k.many.frag # found chain 1q5xA in template set Warning: unaligning (T0547)G42 (1q5xA)N55 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (1q5xA)R57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1q5xA)R59 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DD 1q5xA 53 :EQ T0547 43 :Y 1q5xA 56 :G T0547 45 :G 1q5xA 58 :G T0547 47 :LL 1q5xA 60 :VL Number of specific fragments extracted= 4 number of extra gaps= 3 total=27813 # 1ytlA.40.31 read from T0547.t2k.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)G45 (1ytlA)R37 because D (zeta) conformation "forbidden" or filtered. T0547 40 :DDGYK 1ytlA 32 :IKKAK T0547 46 :PLL 1ytlA 38 :PLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27815 # 1kkoA.40.185 read from T0547.t2k.many.frag # found chain 1kkoA in training set Warning: unaligning (T0547)P46 (1kkoA)L192 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (1kkoA)P193 because C (cis) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1kkoA 186 :LKGVDV T0547 48 :L 1kkoA 194 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=27817 # 1uc2A.40.18 read from T0547.t2k.many.frag # found chain 1uc2A in template set T0547 40 :DDGYKGPLL 1uc2A 19 :DKRMRVPGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27818 1a8y expands to /projects/compbio/data/pdb/1a8y.pdb.gz 1a8y:Warning: there is no chain 1a8y will retry with 1a8yA # 1a8y.40.26 read from T0547.t2k.many.frag # adding 1a8y to template set # found chain 1a8y in template set Warning: unaligning (T0547)P46 (1a8y)L33 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1a8y 27 :FKKYEV T0547 47 :LL 1a8y 34 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27820 # 2b9eA.40.29 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)P46 (2b9eA)Q162 because G (3-10) conformation "forbidden" or filtered. T0547 40 :DDGYKG 2b9eA 156 :RQGFSY T0547 47 :LL 2b9eA 163 :GR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27822 # 1yt8A.40.141 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)K44 (1yt8A)E146 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1yt8A)V148 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGY 1yt8A 142 :DARA T0547 45 :G 1yt8A 147 :A T0547 47 :LL 1yt8A 149 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=27825 # 1t7lA.41.170 read from T0547.t2k.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)K44 (1t7lA)E142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 41 :DGY 1t7lA 139 :KGI T0547 45 :G 1t7lA 143 :T T0547 47 :LLL 1t7lA 145 :PWV Number of specific fragments extracted= 3 number of extra gaps= 2 total=27828 # 1ufaA.41.48 read from T0547.t2k.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)L47 (1ufaA)F55 because Y (epsilon') conformation "forbidden" or filtered. T0547 41 :DGYKGP 1ufaA 49 :EGVEAP T0547 48 :LL 1ufaA 56 :TL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27830 # 1a5t.41.20 read from T0547.t2k.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)D41 (1a5t)G21 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 42 :GYKG 1a5t 22 :RGHH T0547 47 :LLL 1a5t 27 :LLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=27832 # 1wb4A.41.101 read from T0547.t2k.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)G45 (1wb4A)E894 because P (beta_P) conformation "forbidden" or filtered. T0547 41 :DGYK 1wb4A 890 :NGEL T0547 46 :PLLL 1wb4A 895 :PLIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27834 # 1w2fA.41.67 read from T0547.t2k.many.frag # found chain 1w2fA in training set T0547 41 :DGYKGPLLL 1w2fA 253 :DGFDGPCVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27835 # 1y44A.41.81 read from T0547.t2k.many.frag # found chain 1y44A in template set Warning: unaligning (T0547)G45 (1y44A)D86 because P (beta_P) conformation "forbidden" or filtered. T0547 41 :DGYK 1y44A 82 :QGGE T0547 46 :PLLL 1y44A 87 :ELTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27837 # 1gvfA.41.15 read from T0547.t2k.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)G45 (1gvfA)V20 because P (beta_P) conformation "forbidden" or filtered. T0547 41 :DGYK 1gvfA 16 :NGYA T0547 46 :PLLL 1gvfA 21 :PAFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27839 # 1ytlA.41.32 read from T0547.t2k.many.frag # found chain 1ytlA in training set T0547 41 :DGYKGPLLL 1ytlA 33 :KKAKRPLLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27840 # 1y88A.41.91 read from T0547.t2k.many.frag # found chain 1y88A in template set Warning: unaligning (T0547)G45 (1y88A)Q83 because Y (epsilon') conformation "forbidden" or filtered. T0547 41 :DGYK 1y88A 79 :HGFT T0547 46 :PLLL 1y88A 84 :PWIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27842 # 2bg5A.41.37 read from T0547.t2k.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)G45 (2bg5A)G291 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2bg5A)V292 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYK 2bg5A 287 :NGAE T0547 47 :LLL 2bg5A 293 :GLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27844 # 2bjvA.41.25 read from T0547.t2k.many.frag # found chain 2bjvA in training set T0547 41 :DGYKGPLLL 2bjvA 26 :APLDKPVLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27845 # 1tuoA.41.45 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)Y43 (1tuoA)G48 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (1tuoA)G49 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1tuoA)L50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1tuoA)V51 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DG 1tuoA 46 :RG T0547 47 :LLL 1tuoA 52 :VVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27847 # 1uc2A.41.19 read from T0547.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)G45 (1uc2A)V24 because Y (epsilon') conformation "forbidden" or filtered. T0547 41 :DGYK 1uc2A 20 :KRMR T0547 46 :PLLL 1uc2A 25 :PGRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27849 # 1ajsA.41.126 read from T0547.t2k.many.frag # found chain 1ajsA in training set Warning: unaligning (T0547)D41 (1ajsA)N127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G42 (1ajsA)N128 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y43 (1ajsA)K129 because G (3-10) conformation "forbidden" or filtered. T0547 44 :KGPLLL 1ajsA 130 :DTPVYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27850 # 1q5xA.41.53 read from T0547.t2k.many.frag # found chain 1q5xA in template set Warning: unaligning (T0547)D41 (1q5xA)Q54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1q5xA)R59 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :GYKG 1q5xA 55 :NGRG T0547 47 :LLL 1q5xA 60 :VLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=27852 # 1gmxA.41.17 read from T0547.t2k.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)G45 (1gmxA)V22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYK 1gmxA 18 :EKEA T0547 47 :LLL 1gmxA 24 :VDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27854 # 1qwnA.41.119 read from T0547.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G42 (1qwnA)N121 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1qwnA)M124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1qwnA)K125 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :D 1qwnA 120 :D T0547 43 :YK 1qwnA 122 :PE T0547 47 :LLL 1qwnA 126 :FIW Number of specific fragments extracted= 3 number of extra gaps= 2 total=27857 # 2av4A.41.39 read from T0547.t2k.many.frag # found chain 2av4A in template set Warning: unaligning (T0547)G42 (2av4A)E39 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y43 (2av4A)D40 because G (3-10) conformation "forbidden" or filtered. T0547 41 :D 2av4A 38 :N T0547 44 :KGPLLL 2av4A 41 :ERLVCI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27859 1jb0E expands to /projects/compbio/data/pdb/1jb0.pdb.gz 1jb0E:# 1jb0E.41.29 read from T0547.t2k.many.frag # adding 1jb0E to template set # found chain 1jb0E in template set T0547 41 :DGYKGPLLL 1jb0E 30 :PGVKYPVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27860 # 1of8A.41.63 read from T0547.t2k.many.frag # found chain 1of8A in training set Warning: unaligning (T0547)G45 (1of8A)R68 because P (beta_P) conformation "forbidden" or filtered. T0547 41 :DGYK 1of8A 64 :GKDD T0547 46 :PLLL 1of8A 69 :VLVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27862 # 1knwA.41.21 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K44 (1knwA)G25 because S (epsilon) conformation "forbidden" or filtered. T0547 41 :DGY 1knwA 22 :AEF T0547 45 :GPLLL 1knwA 26 :CPVWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27864 # 2af4C.41.38 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGY 2af4C 39 :RGI T0547 47 :LLL 2af4C 45 :VLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27866 1ei9A expands to /projects/compbio/data/pdb/1ei9.pdb.gz 1ei9A:# 1ei9A.41.1 read from T0547.t2k.many.frag # adding 1ei9A to template set # found chain 1ei9A in template set T0547 41 :DGYKGPLLL 1ei9A 29 :PPAPLPLVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27867 # 1tuoA.41.44 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)G42 (1tuoA)R46 because G (3-10) conformation "forbidden" or filtered. T0547 41 :D 1tuoA 45 :E T0547 43 :YKGPLLL 1tuoA 47 :GGGLVVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27869 # 1u5hA.41.3 read from T0547.t2k.many.frag # found chain 1u5hA in template set T0547 41 :DGYKGPLLL 1u5hA 4 :RAAGPGWLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27870 # 1a8y.41.27 read from T0547.t2k.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)P46 (1a8y)L33 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1a8y 28 :KKYEV T0547 47 :LLL 1a8y 34 :ALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27872 # 1eyeA.41.40 read from T0547.t2k.many.frag # found chain 1eyeA in template set Warning: unaligning (T0547)G45 (1eyeA)I45 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1eyeA)V46 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYK 1eyeA 41 :AGAG T0547 47 :LLL 1eyeA 47 :DVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27874 # 1thfD.41.41 read from T0547.t2k.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)P46 (1thfD)L47 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1thfD 42 :IGIDE T0547 47 :LLL 1thfD 48 :VFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27876 # 1r2mA.41.44 read from T0547.t2k.many.frag # found chain 1r2mA in template set Warning: unaligning (T0547)G42 (1r2mA)K46 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1r2mA)K49 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :D 1r2mA 45 :S T0547 43 :YK 1r2mA 47 :GS T0547 46 :PLLL 1r2mA 50 :PLCC Number of specific fragments extracted= 3 number of extra gaps= 2 total=27879 # 1jeyA.41.76 read from T0547.t2k.many.frag # found chain 1jeyA in template set Warning: unaligning (T0547)P46 (1jeyA)L82 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1jeyA 77 :SSDRD T0547 47 :LLL 1jeyA 83 :LAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27881 # 1ufaA.42.49 read from T0547.t2k.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)G45 (1ufaA)A53 because D (zeta) conformation "forbidden" or filtered. T0547 42 :GYK 1ufaA 50 :GVE T0547 46 :PLLLR 1ufaA 54 :PFTLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27883 # 1t7lA.42.171 read from T0547.t2k.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)G45 (1t7lA)T143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 42 :GYK 1t7lA 140 :GIE T0547 47 :LLLR 1t7lA 145 :PWVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27885 # 1wb4A.42.102 read from T0547.t2k.many.frag # found chain 1wb4A in training set T0547 42 :GYKGPLLLR 1wb4A 891 :GELEPLIVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27886 # 2bjvA.42.26 read from T0547.t2k.many.frag # found chain 2bjvA in training set T0547 42 :GYKGPLLLR 2bjvA 27 :PLDKPVLII Number of specific fragments extracted= 1 number of extra gaps= 0 total=27887 # 1ytlA.42.33 read from T0547.t2k.many.frag # found chain 1ytlA in training set T0547 42 :GYKGPLLLR 1ytlA 34 :KAKRPLLIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27888 # 1knwA.42.22 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 42 :GYKGPLLLR 1knwA 23 :EFGCPVWVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27889 # 1y44A.42.82 read from T0547.t2k.many.frag # found chain 1y44A in template set T0547 42 :GYKGPLLLR 1y44A 83 :GGEDELTVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27890 # 1a5t.42.21 read from T0547.t2k.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)G42 (1a5t)R22 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (1a5t)H24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 43 :Y 1a5t 23 :G T0547 45 :G 1a5t 25 :H T0547 47 :LLLR 1a5t 27 :LLIQ Number of specific fragments extracted= 3 number of extra gaps= 3 total=27893 # 1q5xA.42.54 read from T0547.t2k.many.frag # found chain 1q5xA in template set Warning: unaligning (T0547)G42 (1q5xA)N55 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1q5xA)R59 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YKG 1q5xA 56 :GRG T0547 47 :LLLR 1q5xA 60 :VLVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=27895 # 1w2fA.42.68 read from T0547.t2k.many.frag # found chain 1w2fA in training set Warning: unaligning (T0547)K44 (1w2fA)D256 because D (zeta) conformation "forbidden" or filtered. T0547 42 :GY 1w2fA 254 :GF T0547 45 :GPLLLR 1w2fA 257 :GPCVLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27897 # 2af4C.42.39 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 42 :GY 2af4C 40 :GI T0547 47 :LLL 2af4C 45 :VLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=27899 # 1ajsA.42.127 read from T0547.t2k.many.frag # found chain 1ajsA in training set Warning: unaligning (T0547)G42 (1ajsA)N128 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1ajsA)T131 because P (beta_P) conformation "forbidden" or filtered. T0547 43 :YK 1ajsA 129 :KD T0547 46 :PLLLR 1ajsA 132 :PVYVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=27901 # 1gvfA.42.16 read from T0547.t2k.many.frag # found chain 1gvfA in training set T0547 42 :GYKGPLLLR 1gvfA 17 :GYAVPAFNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27902 # 1ei9A.42.2 read from T0547.t2k.many.frag # found chain 1ei9A in template set T0547 42 :GYKGPLLLR 1ei9A 30 :PAPLPLVIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=27903 # 1y88A.42.92 read from T0547.t2k.many.frag # found chain 1y88A in template set Warning: unaligning (T0547)G45 (1y88A)Q83 because Y (epsilon') conformation "forbidden" or filtered. T0547 42 :GYK 1y88A 80 :GFT T0547 46 :PLLLR 1y88A 84 :PWIFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27905 # 1uc2A.42.20 read from T0547.t2k.many.frag # found chain 1uc2A in template set T0547 42 :GYKGPLLLR 1uc2A 21 :RMRVPGRVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27906 # 1jb0E.42.30 read from T0547.t2k.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)G45 (1jb0E)Y34 because D (zeta) conformation "forbidden" or filtered. T0547 42 :GYK 1jb0E 31 :GVK T0547 46 :PLLLR 1jb0E 35 :PVIVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27908 # 7odcA.42.34 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)G45 (7odcA)D38 because P (beta_P) conformation "forbidden" or filtered. T0547 44 :K 7odcA 37 :K T0547 46 :PLLLR 7odcA 39 :AFYVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27910 1epuA expands to /projects/compbio/data/pdb/1epu.pdb.gz 1epuA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1epuA.42.21 read from T0547.t2k.many.frag # adding 1epuA to template set # found chain 1epuA in template set Warning: unaligning (T0547)G42 (1epuA)N22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1epuA)K26 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YKG 1epuA 23 :AEW T0547 47 :LLLR 1epuA 27 :VLIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=27912 # 1h2wA.42.462 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)G42 (1h2wA)D463 because G (3-10) conformation "forbidden" or filtered. T0547 43 :YKGPLLLR 1h2wA 464 :GSHPAFLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=27913 # 1qwnA.42.120 read from T0547.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)P46 (1qwnA)K125 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :GYKG 1qwnA 121 :NPEM T0547 47 :LLLR 1qwnA 126 :FIWA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27915 # 1gmxA.42.18 read from T0547.t2k.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :GYKG 1gmxA 19 :KEAV T0547 47 :LLLR 1gmxA 24 :VDIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27917 # 1u5hA.42.4 read from T0547.t2k.many.frag # found chain 1u5hA in template set T0547 42 :GYKGPLLLR 1u5hA 5 :AAGPGWLFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27918 # 2av4A.42.40 read from T0547.t2k.many.frag # found chain 2av4A in template set Warning: unaligning (T0547)G42 (2av4A)E39 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (2av4A)R42 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YK 2av4A 40 :DE T0547 46 :PLLLR 2av4A 43 :LVCIR Number of specific fragments extracted= 2 number of extra gaps= 2 total=27920 # 1wu7A.42.94 read from T0547.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G45 (1wu7A)R98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1wu7A)P99 because C (cis) conformation "forbidden" or filtered. T0547 42 :GYK 1wu7A 95 :DLQ T0547 47 :LLLR 1wu7A 100 :LRWY Number of specific fragments extracted= 2 number of extra gaps= 1 total=27922 # 1llfA.42.110 read from T0547.t2k.many.frag # found chain 1llfA in training set Warning: unaligning (T0547)K44 (1llfA)N113 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1llfA)W119 because P (beta_P) conformation "forbidden" or filtered. T0547 42 :GY 1llfA 111 :GA T0547 45 :GPLLL 1llfA 114 :LPVML Number of specific fragments extracted= 2 number of extra gaps= 2 total=27924 # 1tuoA.42.45 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)Y43 (1tuoA)G47 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1tuoA)G49 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1tuoA)G54 because Y (epsilon') conformation "forbidden" or filtered. T0547 42 :G 1tuoA 46 :R T0547 44 :K 1tuoA 48 :G T0547 46 :PLLL 1tuoA 50 :LVVV Number of specific fragments extracted= 3 number of extra gaps= 3 total=27927 2b20A expands to /projects/compbio/data/pdb/2b20.pdb.gz 2b20A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 483, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 485, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 487, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 489, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 491, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 493, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 495, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 497, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 499, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 501, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 538, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 540, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 542, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 544, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 546, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 548, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 550, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 552, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 554, because occupancy 0.500 <= existing 0.500 in 2b20A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1266, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1268, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1270, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1272, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1274, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1276, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1278, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1280, because occupancy 0.500 <= existing 0.500 in 2b20A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1776, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1778, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1780, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1782, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1784, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1786, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1788, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1790, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1792, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1794, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2480, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2482, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2484, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2486, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2488, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2490, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2492, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2494, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2496, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2498, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2500, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2502, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2504, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2506, because occupancy 0.500 <= existing 0.500 in 2b20A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2895, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2897, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2899, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2901, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2903, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2905, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2907, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2909, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2911, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2913, because occupancy 0.500 <= existing 0.500 in 2b20A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2b20A.42.225 read from T0547.t2k.many.frag # adding 2b20A to template set # found chain 2b20A in template set Warning: unaligning (T0547)P46 (2b20A)A227 because Y (epsilon') conformation "forbidden" or filtered. T0547 42 :GYKG 2b20A 223 :QLPP T0547 47 :LLLR 2b20A 228 :VYVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27929 1vqoN expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoN:# 1vqoN.42.28 read from T0547.t2k.many.frag # adding 1vqoN to template set # found chain 1vqoN in template set Warning: unaligning (T0547)K44 (1vqoN)G30 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1vqoN)K31 because P (beta_P) conformation "forbidden" or filtered. T0547 42 :GY 1vqoN 28 :KS T0547 46 :PLLLR 1vqoN 32 :PRLVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27931 2fnaA expands to /projects/compbio/data/pdb/2fna.pdb.gz 2fnaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 996, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1000, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1002, because occupancy 0.500 <= existing 0.500 in 2fnaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1457, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1461, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1463, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1465, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1467, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1469, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1471, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1473, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1507, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1511, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1513, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1515, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1517, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1519, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1725, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1729, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1731, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1733, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1735, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1737, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1739, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1741, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 2110, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 2114, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 2116, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 2118, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 2120, because occupancy 0.500 <= existing 0.500 in 2fnaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2fnaA.42.52 read from T0547.t2k.many.frag # adding 2fnaA to template set # found chain 2fnaA in template set Warning: unaligning (T0547)K44 (2fnaA)N54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (2fnaA)Y57 because Y (epsilon') conformation "forbidden" or filtered. T0547 42 :GY 2fnaA 52 :EL T0547 45 :GP 2fnaA 55 :LP T0547 48 :LLR 2fnaA 58 :IYL Number of specific fragments extracted= 3 number of extra gaps= 2 total=27934 # 1knwA.43.23 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P46 (1knwA)P27 because C (cis) conformation "forbidden" or filtered. T0547 43 :YKG 1knwA 24 :FGC T0547 47 :LLLRF 1knwA 28 :VWVYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27936 # 7odcA.43.35 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)G45 (7odcA)D38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (7odcA)F40 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :K 7odcA 37 :K T0547 46 :P 7odcA 39 :A T0547 48 :LLRF 7odcA 41 :YVAD Number of specific fragments extracted= 3 number of extra gaps= 2 total=27939 # 2bjvA.43.27 read from T0547.t2k.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)G45 (2bjvA)K30 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YK 2bjvA 28 :LD T0547 46 :PLLLRF 2bjvA 31 :PVLIIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27941 # 1ufaA.43.50 read from T0547.t2k.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)G45 (1ufaA)A53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (1ufaA)F55 because Y (epsilon') conformation "forbidden" or filtered. T0547 43 :YK 1ufaA 51 :VE T0547 46 :P 1ufaA 54 :P T0547 48 :LLRF 1ufaA 56 :TLGI Number of specific fragments extracted= 3 number of extra gaps= 2 total=27944 # 2af4C.43.40 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 43 :Y 2af4C 41 :I T0547 47 :LLL 2af4C 45 :VLV T0547 51 :F 2af4C 49 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=27947 # 1wb4A.43.103 read from T0547.t2k.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)G45 (1wb4A)E894 because P (beta_P) conformation "forbidden" or filtered. T0547 43 :YK 1wb4A 892 :EL T0547 46 :PLLLRF 1wb4A 895 :PLIVVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27949 # 1ytlA.43.34 read from T0547.t2k.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)G45 (1ytlA)R37 because D (zeta) conformation "forbidden" or filtered. T0547 43 :YK 1ytlA 35 :AK T0547 46 :PLLLRF 1ytlA 38 :PLLIVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27951 # 1a5t.43.22 read from T0547.t2k.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 43 :YKG 1a5t 23 :GHH T0547 47 :LLLRF 1a5t 27 :LLIQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27953 # 1y44A.43.83 read from T0547.t2k.many.frag # found chain 1y44A in template set Warning: unaligning (T0547)G45 (1y44A)D86 because P (beta_P) conformation "forbidden" or filtered. T0547 43 :YK 1y44A 84 :GE T0547 46 :PLLLRF 1y44A 87 :ELTVYG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27955 # 1t7lA.43.172 read from T0547.t2k.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)G45 (1t7lA)T143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 43 :YK 1t7lA 141 :IE T0547 47 :LLLRF 1t7lA 145 :PWVIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27957 # 1uc2A.43.21 read from T0547.t2k.many.frag # found chain 1uc2A in template set T0547 43 :YKGPLLLRF 1uc2A 22 :MRVPGRVYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27958 # 1q5xA.43.55 read from T0547.t2k.many.frag # found chain 1q5xA in template set Warning: unaligning (T0547)Y43 (1q5xA)G56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1q5xA)R59 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :KG 1q5xA 57 :RG T0547 47 :LLLRF 1q5xA 60 :VLVVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=27960 # 1jb0E.43.31 read from T0547.t2k.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)G45 (1jb0E)Y34 because D (zeta) conformation "forbidden" or filtered. T0547 43 :YK 1jb0E 32 :VK T0547 46 :PLLLRF 1jb0E 35 :PVIVRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27962 # 1ajsA.43.128 read from T0547.t2k.many.frag # found chain 1ajsA in training set T0547 43 :YKGPLLLRF 1ajsA 129 :KDTPVYVSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27963 # 1y88A.43.93 read from T0547.t2k.many.frag # found chain 1y88A in template set Warning: unaligning (T0547)G45 (1y88A)Q83 because Y (epsilon') conformation "forbidden" or filtered. T0547 43 :YK 1y88A 81 :FT T0547 46 :PLLLRF 1y88A 84 :PWIFTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27965 # 1h2wA.43.463 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)G45 (1h2wA)H466 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F51 (1h2wA)G472 because Y (epsilon') conformation "forbidden" or filtered. T0547 43 :YK 1h2wA 464 :GS T0547 46 :PLLLR 1h2wA 467 :PAFLY Number of specific fragments extracted= 2 number of extra gaps= 2 total=27967 # 1epuA.43.22 read from T0547.t2k.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)K44 (1epuA)E24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1epuA)W25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1epuA)K26 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :Y 1epuA 23 :A T0547 47 :LLLRF 1epuA 27 :VLIVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27969 # 1w2fA.43.69 read from T0547.t2k.many.frag # found chain 1w2fA in training set Warning: unaligning (T0547)K44 (1w2fA)D256 because D (zeta) conformation "forbidden" or filtered. T0547 43 :Y 1w2fA 255 :F T0547 45 :GPLLLRF 1w2fA 257 :GPCVLDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27971 # 1gmxA.43.19 read from T0547.t2k.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YKG 1gmxA 20 :EAV T0547 47 :LLLRF 1gmxA 24 :VDIRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27973 # 1wu7A.43.95 read from T0547.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G45 (1wu7A)R98 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YK 1wu7A 96 :LQ T0547 46 :PLLLRF 1wu7A 99 :PLRWYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27975 # 1gvfA.43.17 read from T0547.t2k.many.frag # found chain 1gvfA in training set T0547 43 :YKGPLLLRF 1gvfA 18 :YAVPAFNIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=27976 # 1ei9A.43.3 read from T0547.t2k.many.frag # found chain 1ei9A in template set Warning: unaligning (T0547)G45 (1ei9A)L33 because P (beta_P) conformation "forbidden" or filtered. T0547 43 :YK 1ei9A 31 :AP T0547 46 :PLLLRF 1ei9A 34 :PLVIWH Number of specific fragments extracted= 2 number of extra gaps= 1 total=27978 # 1ryoA.43.2 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)K44 because first residue in template chain is (1ryoA)K4 T0547 45 :GPLLLRF 1ryoA 5 :TVRWCAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27979 # 1zjcA.43.26 read from T0547.t2k.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)G45 (1zjcA)Q26 because P (beta_P) conformation "forbidden" or filtered. T0547 43 :YK 1zjcA 24 :PK T0547 46 :PLLLRF 1zjcA 27 :PVFIRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27981 1yzyA expands to /projects/compbio/data/pdb/1yzy.pdb.gz 1yzyA:# 1yzyA.43.159 read from T0547.t2k.many.frag # adding 1yzyA to template set # found chain 1yzyA in template set Warning: unaligning (T0547)P46 (1yzyA)K162 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YKG 1yzyA 159 :AKG T0547 47 :LLLRF 1yzyA 163 :TGLVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27983 1dj7B expands to /projects/compbio/data/pdb/1dj7.pdb.gz 1dj7B:# 1dj7B.43.48 read from T0547.t2k.many.frag # adding 1dj7B to template set # found chain 1dj7B in template set Warning: unaligning (T0547)K44 (1dj7B)N50 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1dj7B)L51 because D (zeta) conformation "forbidden" or filtered. T0547 43 :Y 1dj7B 49 :A T0547 46 :PLLLRF 1dj7B 52 :PVLVKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27985 1w8sA expands to /projects/compbio/data/pdb/1w8s.pdb.gz 1w8sA:Skipped atom 270, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 271, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 272, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 273, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 791, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 792, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1676, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1677, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1678, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1679, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1680, because occupancy 0.350 <= existing 0.650 in 1w8sA # 1w8sA.43.15 read from T0547.t2k.many.frag # adding 1w8sA to template set # found chain 1w8sA in template set Warning: unaligning (T0547)Y43 (1w8sA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1w8sA)S18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1w8sA)I19 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :K 1w8sA 17 :K T0547 47 :LLLRF 1w8sA 20 :ILAYD Number of specific fragments extracted= 2 number of extra gaps= 2 total=27987 # 2av4A.43.41 read from T0547.t2k.many.frag # found chain 2av4A in template set T0547 43 :YKGPLLLRF 2av4A 40 :DERLVCIRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27988 # 2b20A.43.226 read from T0547.t2k.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)K44 (2b20A)P225 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2b20A)A227 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (2b20A)L231 because P (beta_P) conformation "forbidden" or filtered. T0547 43 :Y 2b20A 224 :L T0547 45 :G 2b20A 226 :P T0547 47 :LLL 2b20A 228 :VYV T0547 51 :F 2b20A 232 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=27992 # 1qwnA.43.121 read from T0547.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)P46 (1qwnA)K125 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YKG 1qwnA 122 :PEM T0547 47 :LLLRF 1qwnA 126 :FIWAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27994 # 1knwA.44.24 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K44 (1knwA)G25 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1knwA)C26 because E (beta_S) conformation "forbidden" or filtered. T0547 46 :PLLLRFP 1knwA 27 :PVWVYDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27995 # 7odcA.44.36 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K44 (7odcA)K37 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (7odcA)F40 because Y (epsilon') conformation "forbidden" or filtered. T0547 45 :GP 7odcA 38 :DA T0547 48 :LLRFP 7odcA 41 :YVADL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27997 # 2af4C.44.41 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFP 2af4C 45 :VLVGNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27998 # 2bjvA.44.28 read from T0547.t2k.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)G45 (2bjvA)K30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F51 (2bjvA)G36 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :K 2bjvA 29 :D T0547 46 :PLLLR 2bjvA 31 :PVLII T0547 52 :P 2bjvA 37 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=28001 # 1uc2A.44.22 read from T0547.t2k.many.frag # found chain 1uc2A in template set T0547 44 :KGPLLLRFP 1uc2A 23 :RVPGRVYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28002 # 1ytlA.44.35 read from T0547.t2k.many.frag # found chain 1ytlA in training set T0547 44 :KGPLLLRFP 1ytlA 36 :KRPLLIVGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28003 # 1a5t.44.23 read from T0547.t2k.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)K44 (1a5t)H24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 45 :G 1a5t 25 :H T0547 47 :LLLRFP 1a5t 27 :LLIQAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28005 # 1wb4A.44.104 read from T0547.t2k.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)L47 (1wb4A)L896 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :KGP 1wb4A 893 :LEP T0547 48 :LLRFP 1wb4A 897 :IVVTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28007 # 1gmxA.44.20 read from T0547.t2k.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)K44 (1gmxA)A21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1gmxA)V22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFP 1gmxA 24 :VDIRDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=28008 # 1ufaA.44.51 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 44 :KGPLLLRFP 1ufaA 52 :EAPFTLGIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28009 # 1ryoA.44.3 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)K44 because first residue in template chain is (1ryoA)K4 Warning: unaligning (T0547)P52 (1ryoA)S12 because S (epsilon) conformation "forbidden" or filtered. T0547 45 :GPLLLRF 1ryoA 5 :TVRWCAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=28010 # 1h2wA.44.464 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)L48 (1h2wA)F469 because D (zeta) conformation "forbidden" or filtered. T0547 44 :KGPL 1h2wA 465 :SHPA T0547 49 :LRFP 1h2wA 470 :LYGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28012 # 1y44A.44.84 read from T0547.t2k.many.frag # found chain 1y44A in template set T0547 44 :KGPLLLRFP 1y44A 85 :EDELTVYGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28013 # 1q5xA.44.56 read from T0547.t2k.many.frag # found chain 1q5xA in template set Warning: unaligning (T0547)K44 (1q5xA)R57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1q5xA)R59 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1q5xA)G65 because G (3-10) conformation "forbidden" or filtered. T0547 45 :G 1q5xA 58 :G T0547 47 :LLLRF 1q5xA 60 :VLVVD Number of specific fragments extracted= 2 number of extra gaps= 3 total=28015 # 1t7lA.44.173 read from T0547.t2k.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)K44 (1t7lA)E142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 45 :G 1t7lA 143 :T T0547 47 :LLLRFP 1t7lA 145 :PWVIGP Number of specific fragments extracted= 2 number of extra gaps= 2 total=28017 # 1jb0E.44.32 read from T0547.t2k.many.frag # found chain 1jb0E in template set T0547 44 :KGPLLLRFP 1jb0E 33 :KYPVIVRFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28018 # 1w8sA.44.16 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)G45 (1w8sA)S18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1w8sA)I19 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :K 1w8sA 17 :K T0547 47 :LLLRFP 1w8sA 20 :ILAYDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=28020 # 1ajsA.44.129 read from T0547.t2k.many.frag # found chain 1ajsA in training set Warning: unaligning (T0547)G45 (1ajsA)T131 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1ajsA)P138 because C (cis) conformation "forbidden" or filtered. T0547 44 :K 1ajsA 130 :D T0547 46 :PLLLRF 1ajsA 132 :PVYVSS Number of specific fragments extracted= 2 number of extra gaps= 2 total=28022 2fdoA expands to /projects/compbio/data/pdb/2fdo.pdb.gz 2fdoA:# 2fdoA.44.1 read from T0547.t2k.many.frag # adding 2fdoA to template set # found chain 2fdoA in template set Warning: unaligning (T0547)P46 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2fdoA)P2 T0547 47 :LLLRFP 2fdoA 3 :AYVFSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28023 # 1y88A.44.94 read from T0547.t2k.many.frag # found chain 1y88A in template set Warning: unaligning (T0547)G45 (1y88A)Q83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1y88A)T90 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :K 1y88A 82 :T T0547 46 :PLLLRF 1y88A 84 :PWIFTN Number of specific fragments extracted= 2 number of extra gaps= 2 total=28025 # 1yzyA.44.160 read from T0547.t2k.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)P46 (1yzyA)K162 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :KG 1yzyA 160 :KG T0547 47 :LLLRFP 1yzyA 163 :TGLVAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28027 1ywmA expands to /projects/compbio/data/pdb/1ywm.pdb.gz 1ywmA:# 1ywmA.44.114 read from T0547.t2k.many.frag # adding 1ywmA to template set # found chain 1ywmA in template set Warning: unaligning (T0547)R50 (1ywmA)Y159 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1ywmA)S161 because G (3-10) conformation "forbidden" or filtered. T0547 44 :KGPLLL 1ywmA 153 :SVALTI T0547 51 :F 1ywmA 160 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=28029 1o4wA expands to /projects/compbio/data/pdb/1o4w.pdb.gz 1o4wA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 102, because occupancy 0.500 <= existing 0.500 in 1o4wA Skipped atom 104, because occupancy 0.500 <= existing 0.500 in 1o4wA Skipped atom 106, because occupancy 0.500 <= existing 0.500 in 1o4wA Skipped atom 108, because occupancy 0.500 <= existing 0.500 in 1o4wA Skipped atom 110, because occupancy 0.500 <= existing 0.500 in 1o4wA Skipped atom 112, because occupancy 0.500 <= existing 0.500 in 1o4wA Skipped atom 114, because occupancy 0.500 <= existing 0.500 in 1o4wA Skipped atom 116, because occupancy 0.500 <= existing 0.500 in 1o4wA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 406, because occupancy 0.350 <= existing 0.650 in 1o4wA Skipped atom 408, because occupancy 0.350 <= existing 0.650 in 1o4wA # 1o4wA.44.21 read from T0547.t2k.many.frag # adding 1o4wA to template set # found chain 1o4wA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1o4wA)K10 Warning: unaligning (T0547)P46 (1o4wA)R12 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1o4wA 11 :V T0547 47 :LLLRFP 1o4wA 13 :CAVVDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28031 # 1wnyA.44.54 read from T0547.t2k.many.frag # found chain 1wnyA in training set Warning: unaligning (T0547)P46 (1wnyA)E256 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1wnyA)L260 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :KG 1wnyA 254 :GD T0547 47 :LLL 1wnyA 257 :ALI T0547 51 :FP 1wnyA 261 :EE Number of specific fragments extracted= 3 number of extra gaps= 2 total=28034 # 1nwaA.44.113 read from T0547.t2k.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)K44 (1nwaA)R93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1nwaA)S94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1nwaA)A95 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFP 1nwaA 96 :IFYFDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28035 # 2av4A.44.42 read from T0547.t2k.many.frag # found chain 2av4A in template set Warning: unaligning (T0547)G45 (2av4A)R42 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (2av4A)R47 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (2av4A)G49 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :K 2av4A 41 :E T0547 46 :PLLL 2av4A 43 :LVCI T0547 51 :F 2av4A 48 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=28038 # 1epuA.44.23 read from T0547.t2k.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)P46 (1epuA)K26 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :KG 1epuA 24 :EW T0547 47 :LLLRFP 1epuA 27 :VLIVDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28040 # 1dj7B.44.49 read from T0547.t2k.many.frag # found chain 1dj7B in template set T0547 44 :KGPLLLRFP 1dj7B 50 :NLPVLVKFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28041 # 1qwnA.44.122 read from T0547.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)P46 (1qwnA)K125 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :KG 1qwnA 123 :EM T0547 47 :LLLRFP 1qwnA 126 :FIWAEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28043 1mw5A expands to /projects/compbio/data/pdb/1mw5.pdb.gz 1mw5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 59, because occupancy 0.500 <= existing 0.500 in 1mw5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 61, because occupancy 0.500 <= existing 0.500 in 1mw5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 63, because occupancy 0.500 <= existing 0.500 in 1mw5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 65, because occupancy 0.500 <= existing 0.500 in 1mw5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 67, because occupancy 0.500 <= existing 0.500 in 1mw5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 69, because occupancy 0.500 <= existing 0.500 in 1mw5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 71, because occupancy 0.500 <= existing 0.500 in 1mw5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 73, because occupancy 0.500 <= existing 0.500 in 1mw5A Skipped atom 705, because occupancy 0.500 <= existing 0.500 in 1mw5A Skipped atom 707, because occupancy 0.500 <= existing 0.500 in 1mw5A Skipped atom 709, because occupancy 0.500 <= existing 0.500 in 1mw5A Skipped atom 711, because occupancy 0.500 <= existing 0.500 in 1mw5A Skipped atom 713, because occupancy 0.500 <= existing 0.500 in 1mw5A Skipped atom 715, because occupancy 0.500 <= existing 0.500 in 1mw5A Skipped atom 717, because occupancy 0.500 <= existing 0.500 in 1mw5A Skipped atom 719, because occupancy 0.500 <= existing 0.500 in 1mw5A Skipped atom 721, because occupancy 0.500 <= existing 0.500 in 1mw5A Skipped atom 723, because occupancy 0.500 <= existing 0.500 in 1mw5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1mw5A.44.14 read from T0547.t2k.many.frag # adding 1mw5A to template set # found chain 1mw5A in template set T0547 44 :KGPLLLRFP 1mw5A 12 :RQPVKLYSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28044 # 1knwA.45.25 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P46 (1knwA)P27 because C (cis) conformation "forbidden" or filtered. T0547 45 :G 1knwA 26 :C T0547 47 :LLLRFPH 1knwA 28 :VWVYDAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28046 # 7odcA.45.37 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 45 :GPLLLRFPH 7odcA 38 :DAFYVADLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28047 # 2af4C.45.42 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPH 2af4C 45 :VLVGNEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28048 # 1xttA.45.0 read from T0547.t2k.many.frag # found chain 1xttA in training set Warning: unaligning (T0547)P46 because first residue in template chain is (1xttA)P2 T0547 47 :LLLRFPH 1xttA 3 :LYVIDKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28049 # 1uc2A.45.23 read from T0547.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)G45 (1uc2A)V24 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :PLLLRFPH 1uc2A 25 :PGRVYADE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28050 # 1gmxA.45.21 read from T0547.t2k.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1gmxA 22 :V T0547 47 :LLLRFPH 1gmxA 24 :VDIRDPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28052 # 1a5t.45.24 read from T0547.t2k.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 45 :G 1a5t 25 :H T0547 47 :LLLRFPH 1a5t 27 :LLIQALP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28054 # 2bjvA.45.29 read from T0547.t2k.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)F51 (2bjvA)G36 because Y (epsilon') conformation "forbidden" or filtered. T0547 45 :GPLLLR 2bjvA 30 :KPVLII T0547 52 :PH 2bjvA 37 :ER Number of specific fragments extracted= 2 number of extra gaps= 1 total=28056 # 1ryoA.45.4 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)G45 (1ryoA)T5 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1ryoA)S12 because S (epsilon) conformation "forbidden" or filtered. T0547 46 :PLLLRF 1ryoA 6 :VRWCAV T0547 53 :H 1ryoA 13 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=28058 # 1ytlA.45.36 read from T0547.t2k.many.frag # found chain 1ytlA in training set T0547 45 :GPLLLRFPH 1ytlA 37 :RPLLIVGPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28059 # 1nwaA.45.114 read from T0547.t2k.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P46 (1nwaA)A95 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1nwaA 94 :S T0547 47 :LLLRFPH 1nwaA 96 :IFYFDEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28061 # 1nwaA.45.113 read from T0547.t2k.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P52 (1nwaA)D100 because Y (epsilon') conformation "forbidden" or filtered. T0547 45 :GPLLLRF 1nwaA 93 :RSAIFYF T0547 53 :H 1nwaA 101 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=28063 # 1mw5A.45.15 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 45 :GPLLLRFPH 1mw5A 13 :QPVKLYSVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28064 # 1yzyA.45.161 read from T0547.t2k.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)P46 (1yzyA)K162 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1yzyA 161 :G T0547 47 :LLLRFPH 1yzyA 163 :TGLVAYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28066 # 2fdoA.45.2 read from T0547.t2k.many.frag # found chain 2fdoA in template set Warning: unaligning (T0547)P46 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2fdoA)P2 T0547 47 :LLLRFPH 2fdoA 3 :AYVFSKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28067 # 1epuA.45.24 read from T0547.t2k.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)P46 (1epuA)K26 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1epuA 25 :W T0547 47 :LLLRFPH 1epuA 27 :VLIVDQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28069 # 1rcqA.45.2 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G45 (1rcqA)P3 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (1rcqA)R5 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :P 1rcqA 4 :A T0547 48 :LLRFPH 1rcqA 6 :ALIDLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=28071 1l9vA expands to /projects/compbio/data/pdb/1l9v.pdb.gz 1l9vA:# 1l9vA.45.223 read from T0547.t2k.many.frag # adding 1l9vA to template set # found chain 1l9vA in template set Warning: unaligning (T0547)G45 (1l9vA)G224 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1l9vA)H225 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPH 1l9vA 226 :YRIVKYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28072 # 1ywmA.45.115 read from T0547.t2k.many.frag # found chain 1ywmA in template set Warning: unaligning (T0547)R50 (1ywmA)Y159 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1ywmA)S161 because G (3-10) conformation "forbidden" or filtered. T0547 45 :GPLLL 1ywmA 154 :VALTI T0547 51 :F 1ywmA 160 :D T0547 53 :H 1ywmA 162 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=28075 # 2fckA.45.43 read from T0547.t2k.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)G45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fckA)F46 Warning: unaligning (T0547)R50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fckA)F46 T0547 51 :FPH 2fckA 47 :SQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28076 1tf5A expands to /projects/compbio/data/pdb/1tf5.pdb.gz 1tf5A:# 1tf5A.45.406 read from T0547.t2k.many.frag # adding 1tf5A to template set # found chain 1tf5A in template set Warning: unaligning (T0547)G45 (1tf5A)P404 because P (beta_P) conformation "forbidden" or filtered. T0547 46 :PLLLRFPH 1tf5A 405 :DLIYRTME Number of specific fragments extracted= 1 number of extra gaps= 1 total=28077 # 1wnyA.45.55 read from T0547.t2k.many.frag # found chain 1wnyA in training set Warning: unaligning (T0547)P46 (1wnyA)E256 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1wnyA)L260 because Y (epsilon') conformation "forbidden" or filtered. T0547 45 :G 1wnyA 255 :D T0547 47 :LLL 1wnyA 257 :ALI T0547 51 :FPH 1wnyA 261 :EEG Number of specific fragments extracted= 3 number of extra gaps= 2 total=28080 # 1y44A.45.85 read from T0547.t2k.many.frag # found chain 1y44A in template set T0547 45 :GPLLLRFPH 1y44A 86 :DELTVYGPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28081 # 1sg6A.45.37 read from T0547.t2k.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)P46 (1sg6A)Y39 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1sg6A 38 :T T0547 47 :LLLRFPH 1sg6A 40 :VLVTDTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28083 # 1q5xA.45.57 read from T0547.t2k.many.frag # found chain 1q5xA in template set Warning: unaligning (T0547)P46 (1q5xA)R59 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1q5xA)G65 because G (3-10) conformation "forbidden" or filtered. T0547 45 :G 1q5xA 58 :G T0547 47 :LLLRF 1q5xA 60 :VLVVD T0547 53 :H 1q5xA 66 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=28086 # 1qwnA.45.123 read from T0547.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G45 (1qwnA)M124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1qwnA)K125 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPH 1qwnA 126 :FIWAEIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28087 # 1o4wA.45.22 read from T0547.t2k.many.frag # found chain 1o4wA in template set Warning: unaligning (T0547)P46 (1o4wA)R12 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1o4wA 11 :V T0547 47 :LLLRFPH 1o4wA 13 :CAVVDTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28089 # 1wb4A.45.105 read from T0547.t2k.many.frag # found chain 1wb4A in training set T0547 45 :GPLLLRFPH 1wb4A 894 :EPLIVVTPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28090 # 1w8sA.45.17 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P46 (1w8sA)I19 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1w8sA 18 :S T0547 47 :LLLRFPH 1w8sA 20 :ILAYDHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28092 # 1gvfA.45.19 read from T0547.t2k.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)G45 (1gvfA)V20 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1gvfA)N27 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :PLLLRF 1gvfA 21 :PAFNIH T0547 53 :H 1gvfA 28 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=28094 # 1knwA.46.26 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 46 :PLLLRFPHL 1knwA 27 :PVWVYDAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28095 # 1xttA.46.1 read from T0547.t2k.many.frag # found chain 1xttA in training set Warning: unaligning (T0547)P46 because first residue in template chain is (1xttA)P2 Warning: unaligning (T0547)L48 (1xttA)Y4 because D (zeta) conformation "forbidden" or filtered. T0547 47 :L 1xttA 3 :L T0547 49 :LRFPHL 1xttA 5 :VIDKPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28097 # 7odcA.46.38 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L47 (7odcA)F40 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :P 7odcA 39 :A T0547 48 :LLRFPHL 7odcA 41 :YVADLGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28099 # 1gmxA.46.22 read from T0547.t2k.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1gmxA 24 :VDIRDPQS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28100 # 1uc2A.46.24 read from T0547.t2k.many.frag # found chain 1uc2A in template set T0547 46 :PLLLRFPHL 1uc2A 25 :PGRVYADEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28101 # 2af4C.46.43 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLL 2af4C 45 :VLV T0547 51 :FPHL 2af4C 49 :NEAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=28103 # 1mw5A.46.16 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 46 :PLLLRFPHL 1mw5A 14 :PVKLYSVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28104 # 1rcqA.46.3 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)L47 (1rcqA)R5 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :P 1rcqA 4 :A T0547 48 :LLRFPHL 1rcqA 6 :ALIDLQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28106 # 1nwaA.46.114 read from T0547.t2k.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P52 (1nwaA)D100 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :PLLLRF 1nwaA 94 :SAIFYF T0547 53 :HL 1nwaA 101 :EQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28108 # 1ryoA.46.5 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P52 (1ryoA)S12 because S (epsilon) conformation "forbidden" or filtered. T0547 46 :PLLLRF 1ryoA 6 :VRWCAV T0547 53 :HL 1ryoA 13 :EH Number of specific fragments extracted= 2 number of extra gaps= 1 total=28110 # 2fdoA.46.3 read from T0547.t2k.many.frag # found chain 2fdoA in template set Warning: unaligning (T0547)P46 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2fdoA)P2 T0547 47 :LLLRFPHL 2fdoA 3 :AYVFSKES Number of specific fragments extracted= 1 number of extra gaps= 0 total=28111 # 2bjvA.46.30 read from T0547.t2k.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)F51 (2bjvA)G36 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :PLLLR 2bjvA 31 :PVLII T0547 52 :PHL 2bjvA 37 :ERG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28113 # 1a5t.46.25 read from T0547.t2k.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L54 (1a5t)G34 because T (delta_L) conformation "forbidden" or filtered. T0547 47 :LLLRFPH 1a5t 27 :LLIQALP Number of specific fragments extracted= 1 number of extra gaps= 2 total=28114 # 1l9vA.46.224 read from T0547.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0547)P46 (1l9vA)H225 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H53 (1l9vA)S232 because G (3-10) conformation "forbidden" or filtered. T0547 47 :LLLRFP 1l9vA 226 :YRIVKY T0547 54 :L 1l9vA 233 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=28116 # 1nwaA.46.115 read from T0547.t2k.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P46 (1nwaA)A95 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1nwaA 96 :IFYFDEQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=28117 # 2fckA.46.44 read from T0547.t2k.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)R50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fckA)F46 T0547 51 :FPHL 2fckA 47 :SQQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28118 # 1po5A.46.55 read from T0547.t2k.many.frag # found chain 1po5A in training set Warning: unaligning (T0547)P46 (1po5A)V75 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1po5A 76 :VVLCGTDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28119 # 1mgtA.46.26 read from T0547.t2k.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)P46 (1mgtA)I27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L48 (1mgtA)F29 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :L 1mgtA 28 :A T0547 49 :LRFPHL 1mgtA 30 :AFDRGT Number of specific fragments extracted= 2 number of extra gaps= 2 total=28121 # 1gqiA.46.28 read from T0547.t2k.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)P46 (1gqiA)L33 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1gqiA 34 :HVAGDSPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=28122 # 1x7dA.46.0 read from T0547.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0547)L47 because first residue in template chain is (1x7dA)T2 T0547 48 :LLRFPHL 1x7dA 3 :YFIDVPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28123 # 1ywmA.46.116 read from T0547.t2k.many.frag # found chain 1ywmA in template set Warning: unaligning (T0547)R50 (1ywmA)Y159 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1ywmA)S161 because G (3-10) conformation "forbidden" or filtered. T0547 46 :PLLL 1ywmA 155 :ALTI T0547 51 :F 1ywmA 160 :D T0547 53 :HL 1ywmA 162 :TT Number of specific fragments extracted= 3 number of extra gaps= 2 total=28126 # 1tf5A.46.407 read from T0547.t2k.many.frag # found chain 1tf5A in template set T0547 46 :PLLLRFPHL 1tf5A 405 :DLIYRTMEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28127 # 1jakA.46.47 read from T0547.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0547)P46 (1jakA)H42 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (1jakA)I43 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1jakA)S48 because E (beta_S) conformation "forbidden" or filtered. T0547 48 :LLRF 1jakA 44 :RVDD T0547 53 :HL 1jakA 49 :RE Number of specific fragments extracted= 2 number of extra gaps= 2 total=28129 # 1wnyA.46.56 read from T0547.t2k.many.frag # found chain 1wnyA in training set Warning: unaligning (T0547)P46 (1wnyA)E256 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1wnyA)L260 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLL 1wnyA 257 :ALI T0547 51 :FPHL 1wnyA 261 :EEGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28131 # 2ak3A.46.31 read from T0547.t2k.many.frag # found chain 2ak3A in template set Warning: unaligning (T0547)P46 (2ak3A)L31 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 2ak3A 32 :KHLSSGDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28132 # 1yzyA.46.162 read from T0547.t2k.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)P46 (1yzyA)K162 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1yzyA 163 :TGLVAYAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28133 # 1y44A.46.86 read from T0547.t2k.many.frag # found chain 1y44A in template set Warning: unaligning (T0547)L54 (1y44A)G95 because T (delta_L) conformation "forbidden" or filtered. T0547 46 :PLLLRFPH 1y44A 87 :ELTVYGPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28134 # 1jx4A.46.71 read from T0547.t2k.many.frag # found chain 1jx4A in training set T0547 46 :PLLLRFPHL 1jx4A 72 :VYLPMRKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28135 1uslA expands to /projects/compbio/data/pdb/1usl.pdb.gz 1uslA:# 1uslA.46.12 read from T0547.t2k.many.frag # adding 1uslA to template set # found chain 1uslA in template set Warning: unaligning (T0547)F51 (1uslA)A10 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :PLLLR 1uslA 5 :RVYLG T0547 52 :PHL 1uslA 11 :DHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28137 # 1vpqA.46.79 read from T0547.t2k.many.frag # found chain 1vpqA in template set Warning: unaligning (T0547)P46 (1vpqA)Y68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (1vpqA)F69 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1vpqA)K72 because P (beta_P) conformation "forbidden" or filtered. T0547 48 :LL 1vpqA 70 :TV T0547 51 :FPHL 1vpqA 73 :TPGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=28139 # 1knwA.47.27 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 47 :LLLRFPHLI 1knwA 28 :VWVYDAQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=28140 # 7odcA.47.39 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 47 :LLLRFPHLI 7odcA 40 :FYVADLGDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28141 # 1xttA.47.2 read from T0547.t2k.many.frag # found chain 1xttA in training set T0547 47 :LLLRFPHLI 1xttA 3 :LYVIDKPIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28142 # 1gmxA.47.23 read from T0547.t2k.many.frag # found chain 1gmxA in training set T0547 47 :LLLRFPHLI 1gmxA 24 :VDIRDPQSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28143 # 1uc2A.47.25 read from T0547.t2k.many.frag # found chain 1uc2A in template set T0547 47 :LLLRFPHLI 1uc2A 26 :GRVYADEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28144 # 1ryoA.47.6 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 47 :LLLRFPHLI 1ryoA 7 :RWCAVSEHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28145 # 1rcqA.47.4 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 47 :LLLRFPHLI 1rcqA 5 :RALIDLQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28146 # 2af4C.47.44 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)R50 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLL 2af4C 45 :VLV T0547 51 :FPHLI 2af4C 49 :NEADI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28148 # 1mw5A.47.17 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 47 :LLLRFPHLI 1mw5A 15 :VKLYSVATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28149 # 1l9vA.47.225 read from T0547.t2k.many.frag # found chain 1l9vA in template set T0547 47 :LLLRFPHLI 1l9vA 226 :YRIVKYSSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28150 # 2a7mA.47.204 read from T0547.t2k.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)L49 (2a7mA)G207 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LL 2a7mA 205 :FA T0547 50 :RFPHLI 2a7mA 208 :FDPELA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28152 # 1mgtA.47.27 read from T0547.t2k.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)L48 (1mgtA)F29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L49 (1mgtA)A30 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :L 1mgtA 28 :A T0547 50 :RFPHLI 1mgtA 31 :FDRGTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28154 # 1x7dA.47.1 read from T0547.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0547)L47 because first residue in template chain is (1x7dA)T2 T0547 48 :LLRFPHLI 1x7dA 3 :YFIDVPTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28155 2auwA expands to /projects/compbio/data/pdb/2auw.pdb.gz 2auwA:Skipped atom 79, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 81, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 83, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 85, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 87, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 89, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 91, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 93, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 95, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 153, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 155, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 157, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 159, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 161, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 163, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 165, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 167, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 169, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 171, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 173, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 318, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 320, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 322, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 324, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 326, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 328, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 330, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 406, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 408, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 410, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 412, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 414, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 416, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 418, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 420, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 422, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 486, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 488, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 490, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 492, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 494, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 496, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 498, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 500, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 502, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 504, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 506, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 508, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 510, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 512, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 514, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 516, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 518, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 520, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 522, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 524, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 526, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 528, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 530, because occupancy 0.500 <= existing 0.500 in 2auwA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 831, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 833, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 835, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 837, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 839, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 841, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 843, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 845, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 847, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 849, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 924, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 926, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 928, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 930, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 932, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 934, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 936, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 938, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 940, because occupancy 0.400 <= existing 0.600 in 2auwA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2auwA.47.31 read from T0547.t2k.many.frag # adding 2auwA to template set # found chain 2auwA in template set Warning: unaligning (T0547)R50 (2auwA)D33 because P (beta_P) conformation "forbidden" or filtered. T0547 47 :LLL 2auwA 30 :LEV T0547 51 :FPHLI 2auwA 34 :VGDIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28157 # 1kgdA.47.53 read from T0547.t2k.many.frag # found chain 1kgdA in training set T0547 47 :LLLRFPHLI 1kgdA 783 :YYFVSHDQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28158 # 2fdoA.47.4 read from T0547.t2k.many.frag # found chain 2fdoA in template set T0547 47 :LLLRFPHLI 2fdoA 3 :AYVFSKESF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28159 # 1po5A.47.56 read from T0547.t2k.many.frag # found chain 1po5A in training set T0547 47 :LLLRFPHLI 1po5A 76 :VVLCGTDAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28160 # 1lvaA.47.55 read from T0547.t2k.many.frag # found chain 1lvaA in template set T0547 47 :LLLRFPHLI 1lvaA 432 :LYAISTERY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28161 # 2fckA.47.45 read from T0547.t2k.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)R50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fckA)F46 T0547 51 :FPHLI 2fckA 47 :SQQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28162 # 2ak3A.47.32 read from T0547.t2k.many.frag # found chain 2ak3A in template set T0547 47 :LLLRFPHLI 2ak3A 32 :KHLSSGDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28163 # 1nwaA.47.115 read from T0547.t2k.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P52 (1nwaA)D100 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLLRF 1nwaA 95 :AIFYF T0547 53 :HLI 1nwaA 101 :EQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28165 # 1fsgA.47.46 read from T0547.t2k.many.frag # found chain 1fsgA in training set Warning: unaligning (T0547)R50 (1fsgA)L47 because D (zeta) conformation "forbidden" or filtered. T0547 47 :LLL 1fsgA 44 :KIL T0547 51 :FPHLI 1fsgA 48 :PGGLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28167 # 1jx4A.47.72 read from T0547.t2k.many.frag # found chain 1jx4A in training set T0547 47 :LLLRFPHLI 1jx4A 73 :YLPMRKEVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28168 1u4bA expands to /projects/compbio/data/pdb/1u4b.pdb.gz 1u4bA:# 1u4bA.47.195 read from T0547.t2k.many.frag # adding 1u4bA to template set # found chain 1u4bA in template set Warning: unaligning (T0547)L47 (1u4bA)G492 because S (epsilon) conformation "forbidden" or filtered. T0547 48 :LLRFPHLI 1u4bA 493 :VKVDTKRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28169 # 1wnyA.47.57 read from T0547.t2k.many.frag # found chain 1wnyA in training set Warning: unaligning (T0547)R50 (1wnyA)L260 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLL 1wnyA 257 :ALI T0547 51 :FPHLI 1wnyA 261 :EEGLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28171 1zhaA expands to /projects/compbio/data/pdb/1zha.pdb.gz 1zhaA:# 1zhaA.47.10 read from T0547.t2k.many.frag # adding 1zhaA to template set # found chain 1zhaA in template set T0547 47 :LLLRFPHLI 1zhaA 1011 :CAIESEELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28172 1vi6A expands to /projects/compbio/data/pdb/1vi6.pdb.gz 1vi6A:Skipped atom 908, because occupancy 0.350 <= existing 0.650 in 1vi6A Skipped atom 910, because occupancy 0.350 <= existing 0.650 in 1vi6A Skipped atom 912, because occupancy 0.350 <= existing 0.650 in 1vi6A Skipped atom 1057, because occupancy 0.500 <= existing 0.500 in 1vi6A Skipped atom 1059, because occupancy 0.500 <= existing 0.500 in 1vi6A # 1vi6A.47.43 read from T0547.t2k.many.frag # adding 1vi6A to template set # found chain 1vi6A in template set T0547 47 :LLLRFPHLI 1vi6A 43 :LYVLDIRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28173 # 1ywmA.47.117 read from T0547.t2k.many.frag # found chain 1ywmA in template set Warning: unaligning (T0547)P52 (1ywmA)S161 because G (3-10) conformation "forbidden" or filtered. T0547 47 :LLLRF 1ywmA 156 :LTIYD T0547 53 :HLI 1ywmA 162 :TTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28175 1wfxA expands to /projects/compbio/data/pdb/1wfx.pdb.gz 1wfxA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wfxA.47.119 read from T0547.t2k.many.frag # adding 1wfxA to template set # found chain 1wfxA in template set T0547 47 :LLLRFPHLI 1wfxA 120 :HLTSSLEDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28176 # 1uslA.47.13 read from T0547.t2k.many.frag # found chain 1uslA in template set Warning: unaligning (T0547)I55 (1uslA)G14 because G (3-10) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1uslA 6 :VYLGADHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28177 # 1xttA.48.3 read from T0547.t2k.many.frag # found chain 1xttA in training set T0547 48 :LLRFPHLIQ 1xttA 4 :YVIDKPITL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28178 # 1l9vA.48.226 read from T0547.t2k.many.frag # found chain 1l9vA in template set T0547 48 :LLRFPHLIQ 1l9vA 227 :RIVKYSSVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28179 # 1knwA.48.28 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 48 :LLRFPHLIQ 1knwA 29 :WVYDAQIIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28180 # 1ryoA.48.7 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 48 :LLRFPHLIQ 1ryoA 8 :WCAVSEHEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28181 # 2a7mA.48.205 read from T0547.t2k.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)L49 (2a7mA)G207 because Y (epsilon') conformation "forbidden" or filtered. T0547 48 :L 2a7mA 206 :A T0547 50 :RFPHLIQ 2a7mA 208 :FDPELAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28183 # 1mw5A.48.18 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 48 :LLRFPHLIQ 1mw5A 16 :KLYSVATLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28184 # 1mgtA.48.28 read from T0547.t2k.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)L48 (1mgtA)F29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L49 (1mgtA)A30 because Y (epsilon') conformation "forbidden" or filtered. T0547 50 :RFPHLIQ 1mgtA 31 :FDRGTLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=28185 # 1gmxA.48.24 read from T0547.t2k.many.frag # found chain 1gmxA in training set T0547 48 :LLRFPHLIQ 1gmxA 25 :DIRDPQSFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28186 # 2af4C.48.45 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)R50 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 48 :LL 2af4C 46 :LV T0547 51 :FPHLIQ 2af4C 49 :NEADIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28188 # 1lvaA.48.56 read from T0547.t2k.many.frag # found chain 1lvaA in template set T0547 48 :LLRFPHLIQ 1lvaA 433 :YAISTERYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28189 # 7odcA.48.40 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 48 :LLRFPHLIQ 7odcA 41 :YVADLGDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28190 # 1rcqA.48.5 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 48 :LLRFPHLIQ 1rcqA 6 :ALIDLQALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28191 # 2auwA.48.32 read from T0547.t2k.many.frag # found chain 2auwA in template set T0547 48 :LLRFPHLIQ 2auwA 31 :EVDVGDILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28192 # 1uc2A.48.26 read from T0547.t2k.many.frag # found chain 1uc2A in template set T0547 48 :LLRFPHLIQ 1uc2A 27 :RVYADEVLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28193 # 1fsgA.48.47 read from T0547.t2k.many.frag # found chain 1fsgA in training set T0547 48 :LLRFPHLIQ 1fsgA 45 :ILLPGGLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28194 # 1u4bA.48.196 read from T0547.t2k.many.frag # found chain 1u4bA in template set T0547 48 :LLRFPHLIQ 1u4bA 493 :VKVDTKRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28195 # 1kgdA.48.54 read from T0547.t2k.many.frag # found chain 1kgdA in training set T0547 48 :LLRFPHLIQ 1kgdA 784 :YFVSHDQMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28196 # 1v96A.48.68 read from T0547.t2k.many.frag # found chain 1v96A in training set T0547 48 :LLRFPHLIQ 1v96A 69 :IVPLLDDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28197 # 1po5A.48.57 read from T0547.t2k.many.frag # found chain 1po5A in training set T0547 48 :LLRFPHLIQ 1po5A 77 :VLCGTDAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28198 # 1zhaA.48.11 read from T0547.t2k.many.frag # found chain 1zhaA in template set T0547 48 :LLRFPHLIQ 1zhaA 1012 :AIESEELLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28199 # 1x7dA.48.2 read from T0547.t2k.many.frag # found chain 1x7dA in training set T0547 48 :LLRFPHLIQ 1x7dA 3 :YFIDVPTMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28200 1fjgJ expands to /projects/compbio/data/pdb/1fjg.pdb.gz 1fjgJ:# 1fjgJ.48.8 read from T0547.t2k.many.frag # adding 1fjgJ to template set # found chain 1fjgJ in template set T0547 48 :LLRFPHLIQ 1fjgJ 9 :RGFDHKTLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28201 # 2fckA.48.46 read from T0547.t2k.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)R50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fckA)F46 T0547 51 :FPHLIQ 2fckA 47 :SQQEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28202 # 1yq2A.48.343 read from T0547.t2k.many.frag # found chain 1yq2A in template set T0547 48 :LLRFPHLIQ 1yq2A 343 :RVFDEAGAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28203 # 1jakA.48.49 read from T0547.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0547)P52 (1jakA)S48 because E (beta_S) conformation "forbidden" or filtered. T0547 48 :LLRF 1jakA 44 :RVDD T0547 53 :HLIQ 1jakA 49 :REAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28205 1bxyA expands to /projects/compbio/data/pdb/1bxy.pdb.gz 1bxyA:# 1bxyA.48.35 read from T0547.t2k.many.frag # adding 1bxyA to template set # found chain 1bxyA in template set Warning: unaligning (T0547)P52 (1bxyA)T40 because E (beta_S) conformation "forbidden" or filtered. T0547 48 :LLRF 1bxyA 36 :VLED T0547 53 :HLIQ 1bxyA 41 :PAIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28207 1ua4A expands to /projects/compbio/data/pdb/1ua4.pdb.gz 1ua4A:# 1ua4A.48.36 read from T0547.t2k.many.frag # adding 1ua4A to template set # found chain 1ua4A in template set T0547 48 :LLRFPHLIQ 1ua4A 37 :KYLDSKDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28208 # 1jx4A.48.73 read from T0547.t2k.many.frag # found chain 1jx4A in training set T0547 48 :LLRFPHLIQ 1jx4A 74 :LPMRKEVYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28209 # 2a84A.48.12 read from T0547.t2k.many.frag # found chain 2a84A in training set T0547 48 :LLRFPHLIQ 2a84A 13 :VYSAPGDVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28210 # 1of8A.48.76 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 48 :LLRFPHLIQ 1of8A 77 :SIHDLEAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28211 # 1mgtA.49.29 read from T0547.t2k.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)L49 (1mgtA)A30 because Y (epsilon') conformation "forbidden" or filtered. T0547 50 :RFPHLIQK 1mgtA 31 :FDRGTLMK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28212 # 1mw5A.49.19 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 49 :LRFPHLIQK 1mw5A 17 :LYSVATLFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28213 # 1l9vA.49.227 read from T0547.t2k.many.frag # found chain 1l9vA in template set T0547 49 :LRFPHLIQK 1l9vA 228 :IVKYSSVAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28214 # 1ryoA.49.8 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P52 (1ryoA)S12 because S (epsilon) conformation "forbidden" or filtered. T0547 49 :LRF 1ryoA 9 :CAV T0547 53 :HLIQK 1ryoA 13 :EHEAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28216 # 2a7mA.49.206 read from T0547.t2k.many.frag # found chain 2a7mA in training set T0547 49 :LRFPHLIQK 2a7mA 207 :GFDPELALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28217 # 1xttA.49.4 read from T0547.t2k.many.frag # found chain 1xttA in training set T0547 49 :LRFPHLIQK 1xttA 5 :VIDKPITLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28218 # 1rcqA.49.6 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 49 :LRFPHLIQK 1rcqA 7 :LIDLQALRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28219 # 2af4C.49.46 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)R50 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 49 :L 2af4C 47 :V T0547 51 :FPHLIQK 2af4C 49 :NEADIKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28221 # 1gmxA.49.25 read from T0547.t2k.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)R50 (1gmxA)R27 because P (beta_P) conformation "forbidden" or filtered. T0547 49 :L 1gmxA 26 :I T0547 51 :FPHLIQK 1gmxA 28 :DPQSFAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=28223 # 7odcA.49.41 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 49 :LRFPHLIQK 7odcA 42 :VADLGDILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28224 # 1v96A.49.69 read from T0547.t2k.many.frag # found chain 1v96A in training set T0547 49 :LRFPHLIQK 1v96A 70 :VPLLDDIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28225 # 1lvaA.49.57 read from T0547.t2k.many.frag # found chain 1lvaA in template set T0547 49 :LRFPHLIQK 1lvaA 434 :AISTERYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28226 # 1fjgJ.49.9 read from T0547.t2k.many.frag # found chain 1fjgJ in template set T0547 49 :LRFPHLIQK 1fjgJ 10 :GFDHKTLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28227 # 1kgdA.49.55 read from T0547.t2k.many.frag # found chain 1kgdA in training set T0547 49 :LRFPHLIQK 1kgdA 785 :FVSHDQMMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28228 # 1zhaA.49.12 read from T0547.t2k.many.frag # found chain 1zhaA in template set T0547 49 :LRFPHLIQK 1zhaA 1013 :IESEELLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28229 # 1fsgA.49.48 read from T0547.t2k.many.frag # found chain 1fsgA in training set T0547 49 :LRFPHLIQK 1fsgA 46 :LLPGGLVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28230 # 1knwA.49.29 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 49 :LRFPHLIQK 1knwA 30 :VYDAQIIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28231 # 1u4bA.49.197 read from T0547.t2k.many.frag # found chain 1u4bA in template set T0547 49 :LRFPHLIQK 1u4bA 494 :KVDTKRLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28232 # 2fckA.49.47 read from T0547.t2k.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)R50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fckA)F46 T0547 51 :FPHLIQK 2fckA 47 :SQQEAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28233 # 2auwA.49.33 read from T0547.t2k.many.frag # found chain 2auwA in template set T0547 49 :LRFPHLIQK 2auwA 32 :VDVGDILRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28234 # 1jakA.49.50 read from T0547.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0547)P52 (1jakA)S48 because E (beta_S) conformation "forbidden" or filtered. T0547 49 :LRF 1jakA 45 :VDD T0547 53 :HLIQK 1jakA 49 :REARR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28236 # 1of8A.49.77 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 49 :LRFPHLIQK 1of8A 78 :IHDLEAAQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28237 # 1yq2A.49.344 read from T0547.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)R50 (1yq2A)F345 because P (beta_P) conformation "forbidden" or filtered. T0547 49 :L 1yq2A 344 :V T0547 51 :FPHLIQK 1yq2A 346 :DEAGARE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28239 # 2aqlA.49.57 read from T0547.t2k.many.frag # found chain 2aqlA in template set Warning: unaligning (T0547)F51 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2aqlA)E211 Warning: unaligning (T0547)P52 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2aqlA)E211 T0547 53 :HLIQK 2aqlA 212 :YAVNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28240 # 1po5A.49.58 read from T0547.t2k.many.frag # found chain 1po5A in training set Warning: unaligning (T0547)F51 (1po5A)G80 because S (epsilon) conformation "forbidden" or filtered. T0547 49 :LR 1po5A 78 :LC T0547 52 :PHLIQK 1po5A 81 :TDAIRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28242 # 2a84A.49.13 read from T0547.t2k.many.frag # found chain 2a84A in training set T0547 49 :LRFPHLIQK 2a84A 14 :YSAPGDVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28243 1kyqA expands to /projects/compbio/data/pdb/1kyq.pdb.gz 1kyqA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 110, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 112, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 114, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 116, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 118, because occupancy 0.500 <= existing 0.500 in 1kyqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 803, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 805, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 807, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 809, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 811, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 813, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 815, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 817, because occupancy 0.500 <= existing 0.500 in 1kyqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 883, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 885, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 887, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 889, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 891, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 893, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 928, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 930, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 932, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 934, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 936, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1006, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1008, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1010, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1012, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1014, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1431, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1433, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1435, because occupancy 0.500 <= existing 0.500 in 1kyqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1kyqA.49.18 read from T0547.t2k.many.frag # adding 1kyqA to template set # found chain 1kyqA in template set Warning: unaligning (T0547)R50 (1kyqA)G20 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F51 (1kyqA)G21 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1kyqA)G22 because Y (epsilon') conformation "forbidden" or filtered. T0547 49 :L 1kyqA 19 :I T0547 53 :HLIQK 1kyqA 23 :EVGLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28245 # 1ls1A.49.20 read from T0547.t2k.many.frag # found chain 1ls1A in training set T0547 49 :LRFPHLIQK 1ls1A 21 :RITEEDLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28246 # 1x7dA.49.3 read from T0547.t2k.many.frag # found chain 1x7dA in training set T0547 49 :LRFPHLIQK 1x7dA 4 :FIDVPTMSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28247 # 1ua4A.49.37 read from T0547.t2k.many.frag # found chain 1ua4A in template set T0547 49 :LRFPHLIQK 1ua4A 38 :YLDSKDLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28248 # 1rcqA.50.7 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 50 :RFPHLIQKQ 1rcqA 8 :IDLQALRHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28249 # 1mgtA.50.30 read from T0547.t2k.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)R50 (1mgtA)F31 because G (3-10) conformation "forbidden" or filtered. T0547 51 :FPHLIQKQ 1mgtA 32 :DRGTLMKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=28250 # 2a7mA.50.207 read from T0547.t2k.many.frag # found chain 2a7mA in training set T0547 50 :RFPHLIQKQ 2a7mA 208 :FDPELALSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28251 # 1v96A.50.70 read from T0547.t2k.many.frag # found chain 1v96A in training set T0547 50 :RFPHLIQKQ 1v96A 71 :PLLDDIAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28252 # 1mw5A.50.20 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 50 :RFPHLIQKQ 1mw5A 18 :YSVATLFHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28253 # 1ryoA.50.9 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P52 (1ryoA)S12 because S (epsilon) conformation "forbidden" or filtered. T0547 50 :RF 1ryoA 10 :AV T0547 53 :HLIQKQ 1ryoA 13 :EHEATK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28255 # 1l9vA.50.228 read from T0547.t2k.many.frag # found chain 1l9vA in template set T0547 50 :RFPHLIQKQ 1l9vA 229 :VKYSSVANH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28256 # 7odcA.50.42 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 50 :RFPHLIQKQ 7odcA 43 :ADLGDILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28257 # 1fsgA.50.49 read from T0547.t2k.many.frag # found chain 1fsgA in training set T0547 50 :RFPHLIQKQ 1fsgA 47 :LPGGLVKDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28258 # 1xttA.50.5 read from T0547.t2k.many.frag # found chain 1xttA in training set T0547 50 :RFPHLIQKQ 1xttA 6 :IDKPITLHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28259 # 1ua4A.50.38 read from T0547.t2k.many.frag # found chain 1ua4A in template set T0547 50 :RFPHLIQKQ 1ua4A 39 :LDSKDLEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=28260 # 1qv9A.50.43 read from T0547.t2k.many.frag # found chain 1qv9A in training set Warning: unaligning (T0547)R50 (1qv9A)M44 because G (3-10) conformation "forbidden" or filtered. T0547 51 :FPHLIQKQ 1qv9A 45 :DPECVEAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28261 # 2a0b.50.23 read from T0547.t2k.many.frag # found chain 2a0b in training set Warning: unaligning (T0547)F51 (2a0b)G676 because S (epsilon) conformation "forbidden" or filtered. T0547 50 :R 2a0b 675 :V T0547 52 :PHLIQKQ 2a0b 677 :PKLITDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28263 # 1ls1A.50.21 read from T0547.t2k.many.frag # found chain 1ls1A in training set T0547 50 :RFPHLIQKQ 1ls1A 22 :ITEEDLKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28264 # 1of8A.50.78 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 50 :RFPHLIQKQ 1of8A 79 :HDLEAAQEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28265 # 1u4bA.50.198 read from T0547.t2k.many.frag # found chain 1u4bA in template set T0547 50 :RFPHLIQKQ 1u4bA 495 :VDTKRLEQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28266 # 2aqlA.50.58 read from T0547.t2k.many.frag # found chain 2aqlA in template set Warning: unaligning (T0547)F51 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2aqlA)E211 Warning: unaligning (T0547)P52 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2aqlA)E211 T0547 53 :HLIQKQ 2aqlA 212 :YAVNEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28267 # 1fjgJ.50.10 read from T0547.t2k.many.frag # found chain 1fjgJ in template set T0547 50 :RFPHLIQKQ 1fjgJ 11 :FDHKTLDAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28268 1in0A expands to /projects/compbio/data/pdb/1in0.pdb.gz 1in0A:# 1in0A.50.9 read from T0547.t2k.many.frag # adding 1in0A to template set # found chain 1in0A in template set T0547 50 :RFPHLIQKQ 1in0A 10 :ITLHEVRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28269 # 1zhaA.50.13 read from T0547.t2k.many.frag # found chain 1zhaA in template set T0547 50 :RFPHLIQKQ 1zhaA 1014 :ESEELLLKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28270 1h6gA expands to /projects/compbio/data/pdb/1h6g.pdb.gz 1h6gA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1h6gA.50.34 read from T0547.t2k.many.frag # adding 1h6gA to template set # found chain 1h6gA in template set T0547 50 :RFPHLIQKQ 1h6gA 411 :GNEKEVKEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28271 # 2af4C.50.47 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)R50 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 51 :FPHLIQKQ 2af4C 49 :NEADIKAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28272 # 1lvaA.50.58 read from T0547.t2k.many.frag # found chain 1lvaA in template set T0547 50 :RFPHLIQKQ 1lvaA 435 :ISTERYQAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=28273 1s4bP expands to /projects/compbio/data/pdb/1s4b.pdb.gz 1s4bP:# 1s4bP.50.12 read from T0547.t2k.many.frag # adding 1s4bP to template set # found chain 1s4bP in template set T0547 50 :RFPHLIQKQ 1s4bP 28 :LSAQQIEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=28274 # 1jakA.50.51 read from T0547.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0547)P52 (1jakA)S48 because E (beta_S) conformation "forbidden" or filtered. T0547 50 :RF 1jakA 46 :DD T0547 53 :HLIQKQ 1jakA 49 :REARRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28276 # 2c3nA.50.134 read from T0547.t2k.many.frag # found chain 2c3nA in training set T0547 50 :RFPHLIQKQ 2c3nA 128 :VSPQTLAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28277 # 2a84A.50.14 read from T0547.t2k.many.frag # found chain 2a84A in training set T0547 50 :RFPHLIQKQ 2a84A 15 :SAPGDVADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28278 # 1m1nA.50.2 read from T0547.t2k.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)R50 because first residue in template chain is (1m1nA)M4 T0547 51 :FPHLIQKQ 1m1nA 5 :SREEVESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28279 # 1knwA.50.30 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 50 :RFPHLIQKQ 1knwA 31 :YDAQIIRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28280 1zroA expands to /projects/compbio/data/pdb/1zro.pdb.gz 1zroA:Skipped atom 174, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 176, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 178, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 180, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 182, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 188, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 190, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 192, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 194, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 208, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 209, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 211, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 212, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 214, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 215, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 217, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 218, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 220, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 221, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 223, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 224, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 226, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 227, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 233, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 235, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 241, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 243, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 245, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 247, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 1954, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 1956, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 1958, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 1960, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 1962, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 2785, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2787, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2789, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2795, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2797, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2799, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2801, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2803, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2809, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2811, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2813, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2815, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2821, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2823, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2825, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 3413, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3414, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3416, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3417, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3419, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3420, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3422, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3423, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3425, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3426, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3428, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3429, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3431, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3432, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3434, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3435, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3455, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3457, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3459, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3461, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3645, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3647, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3649, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3651, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3653, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4516, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4518, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4520, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4522, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4524, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4551, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4553, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4555, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4557, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4559, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4565, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4567, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4569, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4571, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4573, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4575, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4577, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4579, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4607, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4609, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4611, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4613, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4619, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4621, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4623, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4625, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4631, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4633, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4635, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4637, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4639, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4641, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4643, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4645, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4651, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4653, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4655, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4657, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4659, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4665, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4667, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4669, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4671, because occupancy 0.400 <= existing 0.600 in 1zroA # 1zroA.50.130 read from T0547.t2k.many.frag # adding 1zroA to template set # found chain 1zroA in template set Warning: unaligning (T0547)H53 (1zroA)H134 because H (helix) conformation "forbidden" or filtered. T0547 50 :RFP 1zroA 131 :ISE T0547 54 :LIQKQ 1zroA 135 :KIKNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28282 # 1rcqA.51.8 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 51 :FPHLIQKQI 1rcqA 9 :DLQALRHNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28283 # 1mgtA.51.31 read from T0547.t2k.many.frag # found chain 1mgtA in training set T0547 51 :FPHLIQKQI 1mgtA 32 :DRGTLMKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28284 # 2a7mA.51.208 read from T0547.t2k.many.frag # found chain 2a7mA in training set T0547 51 :FPHLIQKQI 2a7mA 209 :DPELALSSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28285 # 1l9vA.51.229 read from T0547.t2k.many.frag # found chain 1l9vA in template set T0547 51 :FPHLIQKQI 1l9vA 230 :KYSSVANHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28286 # 1mw5A.51.21 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 51 :FPHLIQKQI 1mw5A 19 :SVATLFHEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28287 # 7odcA.51.43 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 51 :FPHLIQKQI 7odcA 44 :DLGDILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28288 # 1ua4A.51.39 read from T0547.t2k.many.frag # found chain 1ua4A in template set T0547 51 :FPHLIQKQI 1ua4A 40 :DSKDLEERI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28289 # 1fsgA.51.50 read from T0547.t2k.many.frag # found chain 1fsgA in training set T0547 51 :FPHLIQKQI 1fsgA 48 :PGGLVKDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28290 # 1qv9A.51.44 read from T0547.t2k.many.frag # found chain 1qv9A in training set T0547 51 :FPHLIQKQI 1qv9A 45 :DPECVEAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28291 # 1v96A.51.71 read from T0547.t2k.many.frag # found chain 1v96A in training set T0547 51 :FPHLIQKQI 1v96A 72 :LLDDIAIKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28292 # 1ryoA.51.10 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 51 :FPHLIQKQI 1ryoA 11 :VSEHEATKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=28293 # 1ls1A.51.22 read from T0547.t2k.many.frag # found chain 1ls1A in training set T0547 51 :FPHLIQKQI 1ls1A 23 :TEEDLKATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28294 # 1xttA.51.6 read from T0547.t2k.many.frag # found chain 1xttA in training set Warning: unaligning (T0547)F51 (1xttA)D7 because G (3-10) conformation "forbidden" or filtered. T0547 52 :PHLIQKQI 1xttA 8 :KPITLHIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28295 # 1u4bA.51.199 read from T0547.t2k.many.frag # found chain 1u4bA in template set T0547 51 :FPHLIQKQI 1u4bA 496 :DTKRLEQMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28296 # 1of8A.51.79 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 51 :FPHLIQKQI 1of8A 80 :DLEAAQEYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28297 2d0tA expands to /projects/compbio/data/pdb/2d0t.pdb.gz 2d0tA:# 2d0tA.51.194 read from T0547.t2k.many.frag # adding 2d0tA to template set # found chain 2d0tA in template set T0547 51 :FPHLIQKQI 2d0tA 192 :ERDTLLKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28298 # 1h6gA.51.35 read from T0547.t2k.many.frag # found chain 1h6gA in template set T0547 51 :FPHLIQKQI 1h6gA 412 :NEKEVKEYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28299 # 1zhaA.51.14 read from T0547.t2k.many.frag # found chain 1zhaA in template set T0547 51 :FPHLIQKQI 1zhaA 1015 :SEELLLKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28300 # 1s4bP.51.13 read from T0547.t2k.many.frag # found chain 1s4bP in template set T0547 51 :FPHLIQKQI 1s4bP 29 :SAQQIEERT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28301 # 1in0A.51.10 read from T0547.t2k.many.frag # found chain 1in0A in template set T0547 51 :FPHLIQKQI 1in0A 11 :TLHEVRNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28302 # 2aqlA.51.59 read from T0547.t2k.many.frag # found chain 2aqlA in template set Warning: unaligning (T0547)F51 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2aqlA)E211 Warning: unaligning (T0547)P52 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2aqlA)E211 T0547 53 :HLIQKQI 2aqlA 212 :YAVNEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28303 2yhx expands to /projects/compbio/data/pdb/2yhx.pdb.gz 2yhx:Warning: there is no chain 2yhx will retry with 2yhxA Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X # 2yhx.51.18 read from T0547.t2k.many.frag # adding 2yhx to template set # found chain 2yhx in template set Warning: unaligning (T0547)F51 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2yhx)P21 Warning: unaligning (T0547)P52 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2yhx)P21 Warning: unaligning (T0547)H53 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X22 T0547 54 :LIQKQI 2yhx 23 :ILQAVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=28304 # 2a0b.51.24 read from T0547.t2k.many.frag # found chain 2a0b in training set Warning: unaligning (T0547)F51 (2a0b)G676 because S (epsilon) conformation "forbidden" or filtered. T0547 52 :PHLIQKQI 2a0b 677 :PKLITDGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28305 # 1wdpA.51.30 read from T0547.t2k.many.frag # found chain 1wdpA in training set T0547 51 :FPHLIQKQI 1wdpA 31 :DPDGLKEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28306 # 2ak3A.51.36 read from T0547.t2k.many.frag # found chain 2ak3A in template set T0547 51 :FPHLIQKQI 2ak3A 36 :SGDLLRDNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28307 # 1ycdA.51.16 read from T0547.t2k.many.frag # found chain 1ycdA in training set Warning: unaligning (T0547)F51 (1ycdA)N17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I59 (1ycdA)S25 because G (3-10) conformation "forbidden" or filtered. T0547 52 :PHLIQKQ 1ycdA 18 :GKVFSEK Number of specific fragments extracted= 1 number of extra gaps= 2 total=28308 # 1bxyA.51.38 read from T0547.t2k.many.frag # found chain 1bxyA in template set Warning: unaligning (T0547)P52 (1bxyA)T40 because E (beta_S) conformation "forbidden" or filtered. T0547 51 :F 1bxyA 39 :D T0547 53 :HLIQKQI 1bxyA 41 :PAIRGNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28310 # 1h70A.51.27 read from T0547.t2k.many.frag # found chain 1h70A in training set T0547 51 :FPHLIQKQI 1h70A 27 :DYAKALEQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28311 1jbwA expands to /projects/compbio/data/pdb/1jbw.pdb.gz 1jbwA:Bad short name: CX for alphabet: pdb_atoms Bad short name: OQ1 for alphabet: pdb_atoms Bad short name: OQ2 for alphabet: pdb_atoms # 1jbwA.51.90 read from T0547.t2k.many.frag # adding 1jbwA to template set # found chain 1jbwA in template set T0547 51 :FPHLIQKQI 1jbwA 91 :PDAALVNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28312 # 2fckA.51.49 read from T0547.t2k.many.frag # found chain 2fckA in training set T0547 51 :FPHLIQKQI 2fckA 47 :SQQEAEQFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28313 # 1rcqA.52.9 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 52 :PHLIQKQIE 1rcqA 10 :LQALRHNYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28314 # 2a7mA.52.209 read from T0547.t2k.many.frag # found chain 2a7mA in training set T0547 52 :PHLIQKQIE 2a7mA 210 :PELALSSIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28315 # 7odcA.52.44 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 52 :PHLIQKQIE 7odcA 45 :LGDILKKHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28316 # 1mgtA.52.32 read from T0547.t2k.many.frag # found chain 1mgtA in training set T0547 52 :PHLIQKQIE 1mgtA 33 :RGTLMKRIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28317 # 1mw5A.52.22 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 52 :PHLIQKQIE 1mw5A 20 :VATLFHEFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28318 # 1qv9A.52.45 read from T0547.t2k.many.frag # found chain 1qv9A in training set T0547 52 :PHLIQKQIE 1qv9A 46 :PECVEAAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28319 # 1h70A.52.28 read from T0547.t2k.many.frag # found chain 1h70A in training set T0547 52 :PHLIQKQIE 1h70A 28 :YAKALEQHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28320 1w9cA expands to /projects/compbio/data/pdb/1w9c.pdb.gz 1w9cA:# 1w9cA.52.35 read from T0547.t2k.many.frag # adding 1w9cA to template set # found chain 1w9cA in template set T0547 52 :PHLIQKQIE 1w9cA 742 :QPLIRSMRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28321 # 1ua4A.52.40 read from T0547.t2k.many.frag # found chain 1ua4A in template set T0547 52 :PHLIQKQIE 1ua4A 41 :SKDLEERII Number of specific fragments extracted= 1 number of extra gaps= 0 total=28322 # 2d0tA.52.195 read from T0547.t2k.many.frag # found chain 2d0tA in template set T0547 52 :PHLIQKQIE 2d0tA 193 :RDTLLKALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28323 # 1xttA.52.7 read from T0547.t2k.many.frag # found chain 1xttA in training set T0547 52 :PHLIQKQIE 1xttA 8 :KPITLHILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28324 # 1fsgA.52.51 read from T0547.t2k.many.frag # found chain 1fsgA in training set T0547 52 :PHLIQKQIE 1fsgA 49 :GGLVKDRVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28325 # 1l9vA.52.230 read from T0547.t2k.many.frag # found chain 1l9vA in template set T0547 52 :PHLIQKQIE 1l9vA 231 :YSSVANHAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28326 # 1h6gA.52.36 read from T0547.t2k.many.frag # found chain 1h6gA in template set T0547 52 :PHLIQKQIE 1h6gA 413 :EKEVKEYAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28327 # 1ryoA.52.11 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P52 (1ryoA)S12 because S (epsilon) conformation "forbidden" or filtered. T0547 53 :HLIQKQIE 1ryoA 13 :EHEATKCQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=28328 # 1of8A.52.80 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 52 :PHLIQKQIE 1of8A 81 :LEAAQEYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28329 1k0fA expands to /projects/compbio/data/pdb/1k0f.pdb.gz 1k0fA:# 1k0fA.52.128 read from T0547.t2k.many.frag # adding 1k0fA to template set # found chain 1k0fA in template set T0547 52 :PHLIQKQIE 1k0fA 160 :TREFTQRYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28330 # 1h16A.52.471 read from T0547.t2k.many.frag # found chain 1h16A in training set T0547 52 :PHLIQKQIE 1h16A 472 :YDEVMERMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28331 # 1ls1A.52.23 read from T0547.t2k.many.frag # found chain 1ls1A in training set T0547 52 :PHLIQKQIE 1ls1A 24 :EEDLKATLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28332 # 1u4bA.52.200 read from T0547.t2k.many.frag # found chain 1u4bA in template set T0547 52 :PHLIQKQIE 1u4bA 497 :TKRLEQMGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28333 2etdA expands to /projects/compbio/data/pdb/2etd.pdb.gz 2etdA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2etdA.52.23 read from T0547.t2k.many.frag # adding 2etdA to template set # found chain 2etdA in template set Warning: unaligning (T0547)P52 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2etdA)Y46 T0547 53 :HLIQKQIE 2etdA 47 :SQIQNQLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28334 1nw3A expands to /projects/compbio/data/pdb/1nw3.pdb.gz 1nw3A:# 1nw3A.52.67 read from T0547.t2k.many.frag # adding 1nw3A to template set # found chain 1nw3A in template set T0547 52 :PHLIQKQIE 1nw3A 68 :FESMQRLCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28335 # 1v96A.52.72 read from T0547.t2k.many.frag # found chain 1v96A in training set T0547 52 :PHLIQKQIE 1v96A 73 :LDDIAIKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28336 # 2a3nA.52.24 read from T0547.t2k.many.frag # found chain 2a3nA in training set T0547 52 :PHLIQKQIE 2a3nA 13 :QDEYLTSAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28337 # 1ycdA.52.17 read from T0547.t2k.many.frag # found chain 1ycdA in training set T0547 52 :PHLIQKQIE 1ycdA 18 :GKVFSEKSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28338 # 1jbwA.52.91 read from T0547.t2k.many.frag # found chain 1jbwA in template set T0547 52 :PHLIQKQIE 1jbwA 92 :DAALVNAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28339 # 1y0kA.52.6 read from T0547.t2k.many.frag # found chain 1y0kA in training set T0547 52 :PHLIQKQIE 1y0kA 7 :LRLLTRQAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28340 # 1s4bP.52.14 read from T0547.t2k.many.frag # found chain 1s4bP in template set T0547 52 :PHLIQKQIE 1s4bP 30 :AQQIEERTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28341 # 1m1nB.52.339 read from T0547.t2k.many.frag # found chain 1m1nB in training set T0547 52 :PHLIQKQIE 1m1nB 341 :PASLTKERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28342 # 1u0fA.52.118 read from T0547.t2k.many.frag # found chain 1u0fA in template set T0547 52 :PHLIQKQIE 1u0fA 118 :MPEVNRVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28343 # 2a7mA.53.210 read from T0547.t2k.many.frag # found chain 2a7mA in training set T0547 53 :HLIQKQIEN 2a7mA 211 :ELALSSIKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28344 # 1rcqA.53.10 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 53 :HLIQKQIEN 1rcqA 11 :QALRHNYRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28345 # 1mgtA.53.33 read from T0547.t2k.many.frag # found chain 1mgtA in training set T0547 53 :HLIQKQIEN 1mgtA 34 :GTLMKRIHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28346 # 1h70A.53.29 read from T0547.t2k.many.frag # found chain 1h70A in training set T0547 53 :HLIQKQIEN 1h70A 29 :AKALEQHNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28347 # 1qv9A.53.46 read from T0547.t2k.many.frag # found chain 1qv9A in training set T0547 53 :HLIQKQIEN 1qv9A 47 :ECVEAAVEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28348 # 2d0tA.53.196 read from T0547.t2k.many.frag # found chain 2d0tA in template set T0547 53 :HLIQKQIEN 2d0tA 194 :DTLLKALLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28349 # 1ua4A.53.41 read from T0547.t2k.many.frag # found chain 1ua4A in template set T0547 53 :HLIQKQIEN 1ua4A 42 :KDLEERIIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28350 # 1h6gA.53.37 read from T0547.t2k.many.frag # found chain 1h6gA in template set T0547 53 :HLIQKQIEN 1h6gA 414 :KEVKEYAQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28351 # 7odcA.53.45 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 53 :HLIQKQIEN 7odcA 46 :GDILKKHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28352 # 1ryoA.53.12 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 53 :HLIQKQIEN 1ryoA 13 :EHEATKCQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28353 # 1fsgA.53.52 read from T0547.t2k.many.frag # found chain 1fsgA in training set T0547 53 :HLIQKQIEN 1fsgA 50 :GLVKDRVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28354 # 2a3nA.53.25 read from T0547.t2k.many.frag # found chain 2a3nA in training set T0547 53 :HLIQKQIEN 2a3nA 14 :DEYLTSARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28355 # 1l9vA.53.231 read from T0547.t2k.many.frag # found chain 1l9vA in template set T0547 53 :HLIQKQIEN 1l9vA 232 :SSVANHADR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28356 # 1ycdA.53.18 read from T0547.t2k.many.frag # found chain 1ycdA in training set Warning: unaligning (T0547)I59 (1ycdA)S25 because G (3-10) conformation "forbidden" or filtered. T0547 53 :HLIQKQ 1ycdA 19 :KVFSEK T0547 60 :EN 1ycdA 26 :SG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28358 # 1w9cA.53.36 read from T0547.t2k.many.frag # found chain 1w9cA in template set T0547 53 :HLIQKQIEN 1w9cA 743 :PLIRSMRTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28359 # 1ls1A.53.24 read from T0547.t2k.many.frag # found chain 1ls1A in training set T0547 53 :HLIQKQIEN 1ls1A 25 :EDLKATLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28360 # 1h16A.53.472 read from T0547.t2k.many.frag # found chain 1h16A in training set T0547 53 :HLIQKQIEN 1h16A 473 :DEVMERMDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28361 # 2etdA.53.24 read from T0547.t2k.many.frag # found chain 2etdA in template set T0547 53 :HLIQKQIEN 2etdA 47 :SQIQNQLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28362 # 1u4bA.53.201 read from T0547.t2k.many.frag # found chain 1u4bA in template set T0547 53 :HLIQKQIEN 1u4bA 498 :KRLEQMGKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28363 # 1jbwA.53.92 read from T0547.t2k.many.frag # found chain 1jbwA in template set T0547 53 :HLIQKQIEN 1jbwA 93 :AALVNAVAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28364 1lki expands to /projects/compbio/data/pdb/1lki.pdb.gz 1lki:Warning: there is no chain 1lki will retry with 1lkiA # 1lki.53.23 read from T0547.t2k.many.frag # adding 1lki to template set # found chain 1lki in template set T0547 53 :HLIQKQIEN 1lki 24 :NQIKNQLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28365 # 1k0fA.53.129 read from T0547.t2k.many.frag # found chain 1k0fA in template set T0547 53 :HLIQKQIEN 1k0fA 161 :REFTQRYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28366 # 1mw5A.53.23 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 53 :HLIQKQIEN 1mw5A 21 :ATLFHEFSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28367 # 1m1nB.53.340 read from T0547.t2k.many.frag # found chain 1m1nB in training set T0547 53 :HLIQKQIEN 1m1nB 342 :ASLTKERGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28368 # 1of8A.53.81 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 53 :HLIQKQIEN 1of8A 82 :EAAQEYALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28369 # 1nw3A.53.68 read from T0547.t2k.many.frag # found chain 1nw3A in template set T0547 53 :HLIQKQIEN 1nw3A 69 :ESMQRLCDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28370 # 1s4bP.53.15 read from T0547.t2k.many.frag # found chain 1s4bP in template set T0547 53 :HLIQKQIEN 1s4bP 31 :QQIEERTRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28371 # 1iomA.53.58 read from T0547.t2k.many.frag # found chain 1iomA in training set T0547 53 :HLIQKQIEN 1iomA 59 :QELEEFSAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28372 # 1onrA.53.104 read from T0547.t2k.many.frag # found chain 1onrA in template set T0547 53 :HLIQKQIEN 1onrA 106 :EASIAKAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28373 # 1j2zA.53.207 read from T0547.t2k.many.frag # found chain 1j2zA in template set T0547 53 :HLIQKQIEN 1j2zA 208 :DFIYALYKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28374 # 1rcqA.54.11 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 54 :LIQKQIENI 1rcqA 12 :ALRHNYRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28375 # 2a7mA.54.211 read from T0547.t2k.many.frag # found chain 2a7mA in training set T0547 54 :LIQKQIENI 2a7mA 212 :LALSSIKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28376 # 1ryoA.54.13 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 54 :LIQKQIENI 1ryoA 14 :HEATKCQSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28377 # 1h70A.54.30 read from T0547.t2k.many.frag # found chain 1h70A in training set T0547 54 :LIQKQIENI 1h70A 30 :KALEQHNAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28378 # 1mgtA.54.34 read from T0547.t2k.many.frag # found chain 1mgtA in training set T0547 54 :LIQKQIENI 1mgtA 35 :TLMKRIHDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28379 # 2a3nA.54.26 read from T0547.t2k.many.frag # found chain 2a3nA in training set T0547 54 :LIQKQIENI 2a3nA 15 :EYLTSAREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28380 # 1of8A.54.82 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 54 :LIQKQIENI 1of8A 83 :AAQEYALRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28381 # 1qv9A.54.47 read from T0547.t2k.many.frag # found chain 1qv9A in training set T0547 54 :LIQKQIENI 1qv9A 48 :CVEAAVEMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28382 # 1nw3A.54.69 read from T0547.t2k.many.frag # found chain 1nw3A in template set T0547 54 :LIQKQIENI 1nw3A 70 :SMQRLCDKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28383 # 1k0fA.54.130 read from T0547.t2k.many.frag # found chain 1k0fA in template set T0547 54 :LIQKQIENI 1k0fA 162 :EFTQRYQAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28384 # 7odcA.54.46 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 54 :LIQKQIENI 7odcA 47 :DILKKHLRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=28385 # 1ua4A.54.42 read from T0547.t2k.many.frag # found chain 1ua4A in template set T0547 54 :LIQKQIENI 1ua4A 43 :DLEERIIKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28386 # 1w9cA.54.37 read from T0547.t2k.many.frag # found chain 1w9cA in template set T0547 54 :LIQKQIENI 1w9cA 744 :LIRSMRTVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28387 # 2d0tA.54.197 read from T0547.t2k.many.frag # found chain 2d0tA in template set T0547 54 :LIQKQIENI 2d0tA 195 :TLLKALLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28388 # 1h6gA.54.38 read from T0547.t2k.many.frag # found chain 1h6gA in template set T0547 54 :LIQKQIENI 1h6gA 415 :EVKEYAQVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28389 1r5iD expands to /projects/compbio/data/pdb/1r5i.pdb.gz 1r5iD:# 1r5iD.54.49 read from T0547.t2k.many.frag # adding 1r5iD to template set # found chain 1r5iD in template set T0547 54 :LIQKQIENI 1r5iD 47 :LFKLKVNQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28390 1n5uA expands to /projects/compbio/data/pdb/1n5u.pdb.gz 1n5uA:# 1n5uA.54.37 read from T0547.t2k.many.frag # adding 1n5uA to template set # found chain 1n5uA in template set T0547 54 :LIQKQIENI 1n5uA 38 :DHVKLVNEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28391 # 1ycdA.54.19 read from T0547.t2k.many.frag # found chain 1ycdA in training set Warning: unaligning (T0547)I59 (1ycdA)S25 because G (3-10) conformation "forbidden" or filtered. T0547 54 :LIQKQ 1ycdA 20 :VFSEK T0547 60 :ENI 1ycdA 26 :SGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28393 # 1cg5B.54.54 read from T0547.t2k.many.frag # found chain 1cg5B in training set T0547 54 :LIQKQIENI 1cg5B 55 :GVQQHADKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28394 # 1mw5A.54.24 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 54 :LIQKQIENI 1mw5A 22 :TLFHEFSEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28395 # 1onrA.54.105 read from T0547.t2k.many.frag # found chain 1onrA in template set T0547 54 :LIQKQIENI 1onrA 107 :ASIAKAKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28396 # 1in0A.54.13 read from T0547.t2k.many.frag # found chain 1in0A in template set T0547 54 :LIQKQIENI 1in0A 14 :EVRNAVENA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28397 # 1fsgA.54.53 read from T0547.t2k.many.frag # found chain 1fsgA in training set T0547 54 :LIQKQIENI 1fsgA 51 :LVKDRVEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28398 # 2fn0A.54.176 read from T0547.t2k.many.frag # found chain 2fn0A in template set T0547 54 :LIQKQIENI 2fn0A 174 :AYKQQVARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28399 # 1wmwA.54.129 read from T0547.t2k.many.frag # found chain 1wmwA in training set T0547 54 :LIQKQIENI 1wmwA 130 :EVLLEFHEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28400 # 1o9rA.54.49 read from T0547.t2k.many.frag # found chain 1o9rA in training set T0547 54 :LIQKQIENI 1o9rA 50 :AVHELLDTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28401 # 1h16A.54.473 read from T0547.t2k.many.frag # found chain 1h16A in training set T0547 54 :LIQKQIENI 1h16A 474 :EVMERMDHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28402 # 1wdpA.54.33 read from T0547.t2k.many.frag # found chain 1wdpA in training set T0547 54 :LIQKQIENI 1wdpA 34 :GLKEQLLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28403 # 1jbwA.54.93 read from T0547.t2k.many.frag # found chain 1jbwA in template set T0547 54 :LIQKQIENI 1jbwA 94 :ALVNAVAFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28404 1oe4A expands to /projects/compbio/data/pdb/1oe4.pdb.gz 1oe4A:Skipped atom 355, because occupancy 0.500 <= existing 0.500 in 1oe4A Skipped atom 356, because occupancy 0.500 <= existing 0.500 in 1oe4A Skipped atom 357, because occupancy 0.500 <= existing 0.500 in 1oe4A Skipped atom 358, because occupancy 0.500 <= existing 0.500 in 1oe4A Skipped atom 359, because occupancy 0.500 <= existing 0.500 in 1oe4A Skipped atom 1623, because occupancy 0.500 <= existing 0.500 in 1oe4A Skipped atom 1624, because occupancy 0.500 <= existing 0.500 in 1oe4A Skipped atom 1625, because occupancy 0.500 <= existing 0.500 in 1oe4A Skipped atom 1626, because occupancy 0.500 <= existing 0.500 in 1oe4A Skipped atom 1627, because occupancy 0.500 <= existing 0.500 in 1oe4A # 1oe4A.54.6 read from T0547.t2k.many.frag # adding 1oe4A to template set # found chain 1oe4A in template set T0547 54 :LIQKQIENI 1oe4A 41 :SFLKVELEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28405 # 2a7mA.55.212 read from T0547.t2k.many.frag # found chain 2a7mA in training set T0547 55 :IQKQIENIY 2a7mA 213 :ALSSIKRLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28406 # 1ryoA.55.14 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 55 :IQKQIENIY 1ryoA 15 :EATKCQSFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28407 # 1rcqA.55.12 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 55 :IQKQIENIY 1rcqA 13 :LRHNYRLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28408 # 1h70A.55.31 read from T0547.t2k.many.frag # found chain 1h70A in training set T0547 55 :IQKQIENIY 1h70A 31 :ALEQHNAYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28409 # 2a3nA.55.27 read from T0547.t2k.many.frag # found chain 2a3nA in training set T0547 55 :IQKQIENIY 2a3nA 16 :YLTSAREII Number of specific fragments extracted= 1 number of extra gaps= 0 total=28410 # 1mgtA.55.35 read from T0547.t2k.many.frag # found chain 1mgtA in training set T0547 55 :IQKQIENIY 1mgtA 36 :LMKRIHDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28411 # 1nw3A.55.70 read from T0547.t2k.many.frag # found chain 1nw3A in template set T0547 55 :IQKQIENIY 1nw3A 71 :MQRLCDKYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28412 # 1of8A.55.83 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 55 :IQKQIENIY 1of8A 84 :AQEYALRLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28413 # 1qv9A.55.48 read from T0547.t2k.many.frag # found chain 1qv9A in training set T0547 55 :IQKQIENIY 1qv9A 49 :VEAAVEMAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28414 # 1k0fA.55.131 read from T0547.t2k.many.frag # found chain 1k0fA in template set T0547 55 :IQKQIENIY 1k0fA 163 :FTQRYQAYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28415 # 1w9cA.55.38 read from T0547.t2k.many.frag # found chain 1w9cA in template set T0547 55 :IQKQIENIY 1w9cA 745 :IRSMRTVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28416 # 1r5iD.55.50 read from T0547.t2k.many.frag # found chain 1r5iD in template set T0547 55 :IQKQIENIY 1r5iD 48 :FKLKVNQFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28417 # 1cg5B.55.55 read from T0547.t2k.many.frag # found chain 1cg5B in training set T0547 55 :IQKQIENIY 1cg5B 56 :VQQHADKVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28418 # 1nogA.55.27 read from T0547.t2k.many.frag # found chain 1nogA in training set T0547 55 :IQKQIENIY 1nogA 28 :VQGTIDELN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28419 # 1h6gA.55.39 read from T0547.t2k.many.frag # found chain 1h6gA in template set T0547 55 :IQKQIENIY 1h6gA 416 :VKEYAQVFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28420 # 7odcA.55.47 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 55 :IQKQIENIY 7odcA 48 :ILKKHLRWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28421 # 1n5uA.55.38 read from T0547.t2k.many.frag # found chain 1n5uA in template set T0547 55 :IQKQIENIY 1n5uA 39 :HVKLVNEVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28422 # 2d0tA.55.198 read from T0547.t2k.many.frag # found chain 2d0tA in template set T0547 55 :IQKQIENIY 2d0tA 196 :LLKALLEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28423 # 2fn0A.55.177 read from T0547.t2k.many.frag # found chain 2fn0A in template set T0547 55 :IQKQIENIY 2fn0A 175 :YKQQVARAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28424 # 1wmwA.55.130 read from T0547.t2k.many.frag # found chain 1wmwA in training set T0547 55 :IQKQIENIY 1wmwA 131 :VLLEFHEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28425 # 1t6uA.55.13 read from T0547.t2k.many.frag # found chain 1t6uA in training set T0547 55 :IQKQIENIY 1t6uA 14 :ARIEAESVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28426 1s0pA expands to /projects/compbio/data/pdb/1s0p.pdb.gz 1s0pA:# 1s0pA.55.26 read from T0547.t2k.many.frag # adding 1s0pA to template set # found chain 1s0pA in template set T0547 55 :IQKQIENIY 1s0pA 77 :VGNQVEQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28427 # 1in0A.55.14 read from T0547.t2k.many.frag # found chain 1in0A in template set T0547 55 :IQKQIENIY 1in0A 15 :VRNAVENAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28428 # 1fsgA.55.54 read from T0547.t2k.many.frag # found chain 1fsgA in training set T0547 55 :IQKQIENIY 1fsgA 52 :VKDRVEKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28429 # 1o9rA.55.50 read from T0547.t2k.many.frag # found chain 1o9rA in training set T0547 55 :IQKQIENIY 1o9rA 51 :VHELLDTFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28430 # 1u0fA.55.121 read from T0547.t2k.many.frag # found chain 1u0fA in template set T0547 55 :IQKQIENIY 1u0fA 121 :VNRVLDKMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28431 # 1h16A.55.474 read from T0547.t2k.many.frag # found chain 1h16A in training set T0547 55 :IQKQIENIY 1h16A 475 :VMERMDHFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28432 # 1s9rA.55.53 read from T0547.t2k.many.frag # found chain 1s9rA in training set T0547 55 :IQKQIENIY 1s9rA 54 :ARKEHKQFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28433 # 1ycdA.55.20 read from T0547.t2k.many.frag # found chain 1ycdA in training set T0547 55 :IQKQIENIY 1ycdA 21 :FSEKSSGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28434 # 1onrA.55.106 read from T0547.t2k.many.frag # found chain 1onrA in template set T0547 55 :IQKQIENIY 1onrA 108 :SIAKAKRLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28435 # 2a3nA.56.28 read from T0547.t2k.many.frag # found chain 2a3nA in training set T0547 56 :QKQIENIYG 2a3nA 17 :LTSAREIIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28436 # 1ryoA.56.15 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 56 :QKQIENIYG 1ryoA 16 :ATKCQSFRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28437 # 2a7mA.56.213 read from T0547.t2k.many.frag # found chain 2a7mA in training set T0547 56 :QKQIENIYG 2a7mA 214 :LSSIKRLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28438 # 1h70A.56.32 read from T0547.t2k.many.frag # found chain 1h70A in training set T0547 56 :QKQIENIYG 1h70A 32 :LEQHNAYIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28439 # 1rcqA.56.13 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 56 :QKQIENIYG 1rcqA 14 :RHNYRLARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28440 # 1nw3A.56.71 read from T0547.t2k.many.frag # found chain 1nw3A in template set T0547 56 :QKQIENIYG 1nw3A 72 :QRLCDKYNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28441 # 1of8A.56.84 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 56 :QKQIENIYG 1of8A 85 :QEYALRLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28442 # 1mgtA.56.36 read from T0547.t2k.many.frag # found chain 1mgtA in training set T0547 56 :QKQIENIYG 1mgtA 37 :MKRIHDLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28443 # 1nogA.56.28 read from T0547.t2k.many.frag # found chain 1nogA in training set T0547 56 :QKQIENIYG 1nogA 29 :QGTIDELNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28444 # 1k0fA.56.132 read from T0547.t2k.many.frag # found chain 1k0fA in template set T0547 56 :QKQIENIYG 1k0fA 164 :TQRYQAYQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28445 # 1r5iD.56.51 read from T0547.t2k.many.frag # found chain 1r5iD in template set T0547 56 :QKQIENIYG 1r5iD 49 :KLKVNQFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28446 # 1qv9A.56.49 read from T0547.t2k.many.frag # found chain 1qv9A in training set T0547 56 :QKQIENIYG 1qv9A 50 :EAAVEMALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28447 # 1cg5B.56.56 read from T0547.t2k.many.frag # found chain 1cg5B in training set T0547 56 :QKQIENIYG 1cg5B 57 :QQHADKVQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28448 # 2fn0A.56.178 read from T0547.t2k.many.frag # found chain 2fn0A in template set T0547 56 :QKQIENIYG 2fn0A 176 :KQQVARAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28449 # 7odcA.56.48 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 56 :QKQIENIYG 7odcA 49 :LKKHLRWLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28450 # 1n5uA.56.39 read from T0547.t2k.many.frag # found chain 1n5uA in template set T0547 56 :QKQIENIYG 1n5uA 40 :VKLVNEVTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28451 # 2d0tA.56.199 read from T0547.t2k.many.frag # found chain 2d0tA in template set T0547 56 :QKQIENIYG 2d0tA 197 :LKALLEIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28452 # 1wmwA.56.131 read from T0547.t2k.many.frag # found chain 1wmwA in training set T0547 56 :QKQIENIYG 1wmwA 132 :LLEFHEVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28453 # 1h6gA.56.40 read from T0547.t2k.many.frag # found chain 1h6gA in template set T0547 56 :QKQIENIYG 1h6gA 417 :KEYAQVFRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28454 # 1w9cA.56.39 read from T0547.t2k.many.frag # found chain 1w9cA in template set T0547 56 :QKQIENIYG 1w9cA 746 :RSMRTVKRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28455 1ct5A expands to /projects/compbio/data/pdb/1ct5.pdb.gz 1ct5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ct5A.56.14 read from T0547.t2k.many.frag # adding 1ct5A to template set # found chain 1ct5A in template set T0547 56 :QKQIENIYG 1ct5A 16 :IAQYESVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28456 # 1t6uA.56.14 read from T0547.t2k.many.frag # found chain 1t6uA in training set T0547 56 :QKQIENIYG 1t6uA 15 :RIEAESVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28457 # 1o9rA.56.51 read from T0547.t2k.many.frag # found chain 1o9rA in training set T0547 56 :QKQIENIYG 1o9rA 52 :HELLDTFRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28458 # 1s0pA.56.27 read from T0547.t2k.many.frag # found chain 1s0pA in template set T0547 56 :QKQIENIYG 1s0pA 78 :GNQVEQLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28459 # 1u0fA.56.122 read from T0547.t2k.many.frag # found chain 1u0fA in template set T0547 56 :QKQIENIYG 1u0fA 122 :NRVLDKMKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28460 1vkmA expands to /projects/compbio/data/pdb/1vkm.pdb.gz 1vkmA:Skipped atom 129, because occupancy 0.500 <= existing 0.500 in 1vkmA Skipped atom 133, because occupancy 0.500 <= existing 0.500 in 1vkmA Skipped atom 135, because occupancy 0.500 <= existing 0.500 in 1vkmA Skipped atom 137, because occupancy 0.500 <= existing 0.500 in 1vkmA Skipped atom 139, because occupancy 0.500 <= existing 0.500 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 559, because occupancy 0.300 <= existing 0.700 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 563, because occupancy 0.300 <= existing 0.700 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 565, because occupancy 0.300 <= existing 0.700 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 567, because occupancy 0.300 <= existing 0.700 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 569, because occupancy 0.300 <= existing 0.700 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 627, because occupancy 0.200 <= existing 0.800 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 631, because occupancy 0.200 <= existing 0.800 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 633, because occupancy 0.200 <= existing 0.800 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 635, because occupancy 0.200 <= existing 0.800 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 637, because occupancy 0.200 <= existing 0.800 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 747, because occupancy 0.500 <= existing 0.500 in 1vkmA Skipped atom 751, because occupancy 0.500 <= existing 0.500 in 1vkmA Skipped atom 753, because occupancy 0.500 <= existing 0.500 in 1vkmA Skipped atom 755, because occupancy 0.500 <= existing 0.500 in 1vkmA Skipped atom 757, because occupancy 0.500 <= existing 0.500 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1109, because occupancy 0.500 <= existing 0.500 in 1vkmA Skipped atom 1113, because occupancy 0.500 <= existing 0.500 in 1vkmA Skipped atom 1115, because occupancy 0.500 <= existing 0.500 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1279, because occupancy 0.500 <= existing 0.500 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1283, because occupancy 0.500 <= existing 0.500 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1285, because occupancy 0.500 <= existing 0.500 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1287, because occupancy 0.500 <= existing 0.500 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1289, because occupancy 0.500 <= existing 0.500 in 1vkmA Skipped atom 1569, because occupancy 0.500 <= existing 0.500 in 1vkmA Skipped atom 1573, because occupancy 0.500 <= existing 0.500 in 1vkmA Skipped atom 1575, because occupancy 0.500 <= existing 0.500 in 1vkmA Skipped atom 1577, because occupancy 0.500 <= existing 0.500 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1741, because occupancy 0.300 <= existing 0.700 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1745, because occupancy 0.300 <= existing 0.700 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1747, because occupancy 0.300 <= existing 0.700 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1749, because occupancy 0.300 <= existing 0.700 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1751, because occupancy 0.300 <= existing 0.700 in 1vkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vkmA.56.42 read from T0547.t2k.many.frag # adding 1vkmA to template set # found chain 1vkmA in template set T0547 56 :QKQIENIYG 1vkmA 31 :IELFRRAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28461 # 1onrA.56.107 read from T0547.t2k.many.frag # found chain 1onrA in template set T0547 56 :QKQIENIYG 1onrA 109 :IAKAKRLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28462 # 1ycdA.56.21 read from T0547.t2k.many.frag # found chain 1ycdA in training set T0547 56 :QKQIENIYG 1ycdA 22 :SEKSSGIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28463 # 1s9rA.56.54 read from T0547.t2k.many.frag # found chain 1s9rA in training set T0547 56 :QKQIENIYG 1s9rA 55 :RKEHKQFVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28464 # 1eyeA.56.31 read from T0547.t2k.many.frag # found chain 1eyeA in template set T0547 56 :QKQIENIYG 1eyeA 32 :VKHGLAMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28465 # 2a3nA.57.29 read from T0547.t2k.many.frag # found chain 2a3nA in training set T0547 57 :KQIENIYGN 2a3nA 18 :TSAREIIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28466 # 2a7mA.57.214 read from T0547.t2k.many.frag # found chain 2a7mA in training set T0547 57 :KQIENIYGN 2a7mA 215 :SSIKRLKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28467 # 1ryoA.57.16 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 57 :KQIENIYGN 1ryoA 17 :TKCQSFRDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28468 # 1rcqA.57.14 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 57 :KQIENIYGN 1rcqA 15 :HNYRLAREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28469 # 1h70A.57.33 read from T0547.t2k.many.frag # found chain 1h70A in training set T0547 57 :KQIENIYGN 1h70A 33 :EQHNAYIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28470 # 7odcA.57.49 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 57 :KQIENIYGN 7odcA 50 :KKHLRWLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28471 # 1nw3A.57.72 read from T0547.t2k.many.frag # found chain 1nw3A in template set T0547 57 :KQIENIYGN 1nw3A 73 :RLCDKYNRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28472 # 1nogA.57.29 read from T0547.t2k.many.frag # found chain 1nogA in training set T0547 57 :KQIENIYGN 1nogA 30 :GTIDELNSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28473 # 1w9cA.57.40 read from T0547.t2k.many.frag # found chain 1w9cA in template set T0547 57 :KQIENIYGN 1w9cA 747 :SMRTVKRET Number of specific fragments extracted= 1 number of extra gaps= 0 total=28474 # 1of8A.57.85 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 57 :KQIENIYGN 1of8A 86 :EYALRLKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28475 # 1cg5B.57.57 read from T0547.t2k.many.frag # found chain 1cg5B in training set T0547 57 :KQIENIYGN 1cg5B 58 :QHADKVQRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28476 # 1r5iD.57.52 read from T0547.t2k.many.frag # found chain 1r5iD in template set T0547 57 :KQIENIYGN 1r5iD 50 :LKVNQFYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28477 # 1k0fA.57.133 read from T0547.t2k.many.frag # found chain 1k0fA in template set T0547 57 :KQIENIYGN 1k0fA 165 :QRYQAYQQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28478 # 1qv9A.57.50 read from T0547.t2k.many.frag # found chain 1qv9A in training set T0547 57 :KQIENIYGN 1qv9A 51 :AAVEMALDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28479 # 1n5uA.57.40 read from T0547.t2k.many.frag # found chain 1n5uA in template set T0547 57 :KQIENIYGN 1n5uA 41 :KLVNEVTEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28480 # 1wmwA.57.132 read from T0547.t2k.many.frag # found chain 1wmwA in training set T0547 57 :KQIENIYGN 1wmwA 133 :LEFHEVVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28481 # 2fn0A.57.179 read from T0547.t2k.many.frag # found chain 2fn0A in template set T0547 57 :KQIENIYGN 2fn0A 177 :QQVARAVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28482 # 1h6gA.57.41 read from T0547.t2k.many.frag # found chain 1h6gA in template set T0547 57 :KQIENIYGN 1h6gA 418 :EYAQVFREH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28483 # 2d0tA.57.200 read from T0547.t2k.many.frag # found chain 2d0tA in template set T0547 57 :KQIENIYGN 2d0tA 198 :KALLEIASC Number of specific fragments extracted= 1 number of extra gaps= 0 total=28484 # 1t6uA.57.15 read from T0547.t2k.many.frag # found chain 1t6uA in training set T0547 57 :KQIENIYGN 1t6uA 16 :IEAESVKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28485 # 1s0pA.57.28 read from T0547.t2k.many.frag # found chain 1s0pA in template set T0547 57 :KQIENIYGN 1s0pA 79 :NQVEQLVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28486 2a1rA expands to /projects/compbio/data/pdb/2a1r.pdb.gz 2a1rA:# 2a1rA.57.9 read from T0547.t2k.many.frag # adding 2a1rA to template set # found chain 2a1rA in template set T0547 57 :KQIENIYGN 2a1rA 10 :SNLHKVYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28487 # 1vkmA.57.43 read from T0547.t2k.many.frag # found chain 1vkmA in template set T0547 57 :KQIENIYGN 1vkmA 32 :ELFRRAKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28488 # 1o9rA.57.52 read from T0547.t2k.many.frag # found chain 1o9rA in training set T0547 57 :KQIENIYGN 1o9rA 53 :ELLDTFRTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28489 # 1mgtA.57.37 read from T0547.t2k.many.frag # found chain 1mgtA in training set T0547 57 :KQIENIYGN 1mgtA 38 :KRIHDLAEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28490 # 1u0fA.57.123 read from T0547.t2k.many.frag # found chain 1u0fA in template set T0547 57 :KQIENIYGN 1u0fA 123 :RVLDKMKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28491 # 2fupA.57.27 read from T0547.t2k.many.frag # found chain 2fupA in training set T0547 57 :KQIENIYGN 2fupA 16 :GHANQLLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28492 # 1ie9A.57.12 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 57 :KQIENIYGN 1ie9A 130 :RIIAILLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28493 # 1ct5A.57.15 read from T0547.t2k.many.frag # found chain 1ct5A in template set T0547 57 :KQIENIYGN 1ct5A 17 :AQYESVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28494 # 1vdkA.57.161 read from T0547.t2k.many.frag # found chain 1vdkA in training set T0547 57 :KQIENIYGN 1vdkA 162 :PAVEGLIRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28495 # 2a7mA.58.215 read from T0547.t2k.many.frag # found chain 2a7mA in training set T0547 58 :QIENIYGNF 2a7mA 216 :SIKRLKEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28496 # 1nogA.58.30 read from T0547.t2k.many.frag # found chain 1nogA in training set T0547 58 :QIENIYGNF 1nogA 31 :TIDELNSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28497 # 1of8A.58.86 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 58 :QIENIYGNF 1of8A 87 :YALRLKKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28498 # 1h70A.58.34 read from T0547.t2k.many.frag # found chain 1h70A in training set T0547 58 :QIENIYGNF 1h70A 34 :QHNAYIRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28499 # 1cg5B.58.58 read from T0547.t2k.many.frag # found chain 1cg5B in training set T0547 58 :QIENIYGNF 1cg5B 59 :HADKVQRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28500 # 2a3nA.58.30 read from T0547.t2k.many.frag # found chain 2a3nA in training set T0547 58 :QIENIYGNF 2a3nA 19 :SAREIIAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28501 # 1r5iD.58.53 read from T0547.t2k.many.frag # found chain 1r5iD in template set T0547 58 :QIENIYGNF 1r5iD 51 :KVNQFYRHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28502 # 7odcA.58.50 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 58 :QIENIYGNF 7odcA 51 :KHLRWLKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28503 # 1n5uA.58.41 read from T0547.t2k.many.frag # found chain 1n5uA in template set T0547 58 :QIENIYGNF 1n5uA 42 :LVNEVTEFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28504 # 1k0fA.58.134 read from T0547.t2k.many.frag # found chain 1k0fA in template set T0547 58 :QIENIYGNF 1k0fA 166 :RYQAYQQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28505 # 1wmwA.58.133 read from T0547.t2k.many.frag # found chain 1wmwA in training set T0547 58 :QIENIYGNF 1wmwA 134 :EFHEVVRRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28506 # 1nw3A.58.73 read from T0547.t2k.many.frag # found chain 1nw3A in template set T0547 58 :QIENIYGNF 1nw3A 74 :LCDKYNRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28507 # 1h6gA.58.42 read from T0547.t2k.many.frag # found chain 1h6gA in template set T0547 58 :QIENIYGNF 1h6gA 419 :YAQVFREHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28508 # 1vkmA.58.44 read from T0547.t2k.many.frag # found chain 1vkmA in template set T0547 58 :QIENIYGNF 1vkmA 33 :LFRRAKEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28509 # 1qv9A.58.51 read from T0547.t2k.many.frag # found chain 1qv9A in training set T0547 58 :QIENIYGNF 1qv9A 52 :AVEMALDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28510 # 2fn0A.58.180 read from T0547.t2k.many.frag # found chain 2fn0A in template set T0547 58 :QIENIYGNF 2fn0A 178 :QVARAVAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28511 # 2d0tA.58.201 read from T0547.t2k.many.frag # found chain 2d0tA in template set T0547 58 :QIENIYGNF 2d0tA 199 :ALLEIASCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28512 # 1ryoA.58.17 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 58 :QIENIYGNF 1ryoA 18 :KCQSFRDHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28513 # 1vdkA.58.162 read from T0547.t2k.many.frag # found chain 1vdkA in training set T0547 58 :QIENIYGNF 1vdkA 163 :AVEGLIRTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28514 # 1o9rA.58.53 read from T0547.t2k.many.frag # found chain 1o9rA in training set T0547 58 :QIENIYGNF 1o9rA 54 :LLDTFRTQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28515 # 1t6uA.58.16 read from T0547.t2k.many.frag # found chain 1t6uA in training set T0547 58 :QIENIYGNF 1t6uA 17 :EAESVKAVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28516 # 1w9cA.58.41 read from T0547.t2k.many.frag # found chain 1w9cA in template set T0547 58 :QIENIYGNF 1w9cA 748 :MRTVKRETL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28517 # 1ie9A.58.13 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 58 :QIENIYGNF 1ie9A 131 :IIAILLDAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28518 # 2fupA.58.28 read from T0547.t2k.many.frag # found chain 2fupA in training set T0547 58 :QIENIYGNF 2fupA 17 :HANQLLQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28519 # 1rcqA.58.15 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 58 :QIENIYGNF 1rcqA 16 :NYRLAREAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28520 # 1s0pA.58.29 read from T0547.t2k.many.frag # found chain 1s0pA in template set T0547 58 :QIENIYGNF 1s0pA 80 :QVEQLVKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28521 # 1lki.58.28 read from T0547.t2k.many.frag # found chain 1lki in template set T0547 58 :QIENIYGNF 1lki 29 :QLAQLNGSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28522 1bf5A expands to /projects/compbio/data/pdb/1bf5.pdb.gz 1bf5A:# 1bf5A.58.9 read from T0547.t2k.many.frag # adding 1bf5A to template set # found chain 1bf5A in template set T0547 58 :QIENIYGNF 1bf5A 145 :KVRNVKDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28523 # 1xfiA.58.126 read from T0547.t2k.many.frag # found chain 1xfiA in training set T0547 58 :QIENIYGNF 1xfiA 127 :ENAKAISLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28524 1aep expands to /projects/compbio/data/pdb/1aep.pdb.gz 1aep:Warning: there is no chain 1aep will retry with 1aepA # 1aep.58.9 read from T0547.t2k.many.frag # adding 1aep to template set # found chain 1aep in template set T0547 58 :QIENIYGNF 1aep 10 :AVQQLNHTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28525 # 2a3nA.59.31 read from T0547.t2k.many.frag # found chain 2a3nA in training set Warning: unaligning (T0547)N65 (2a3nA)A26 because G (3-10) conformation "forbidden" or filtered. T0547 59 :IENIYG 2a3nA 20 :AREIIA T0547 66 :FN 2a3nA 27 :RQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28527 # 1nw3A.59.74 read from T0547.t2k.many.frag # found chain 1nw3A in template set T0547 59 :IENIYGNFN 1nw3A 75 :CDKYNRAID Number of specific fragments extracted= 1 number of extra gaps= 0 total=28528 # 2a7mA.59.216 read from T0547.t2k.many.frag # found chain 2a7mA in training set T0547 59 :IENIYGNFN 2a7mA 217 :IKRLKEVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28529 # 7odcA.59.51 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 59 :IENIYGNFN 7odcA 52 :HLRWLKALP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28530 # 1nogA.59.31 read from T0547.t2k.many.frag # found chain 1nogA in training set T0547 59 :IENIYGNFN 1nogA 32 :IDELNSFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28531 # 1of8A.59.87 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 59 :IENIYGNFN 1of8A 88 :ALRLKKLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28532 # 1qv9A.59.52 read from T0547.t2k.many.frag # found chain 1qv9A in training set T0547 59 :IENIYGNFN 1qv9A 53 :VEMALDIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28533 # 1n5uA.59.42 read from T0547.t2k.many.frag # found chain 1n5uA in template set T0547 59 :IENIYGNFN 1n5uA 43 :VNEVTEFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28534 # 1cg5B.59.59 read from T0547.t2k.many.frag # found chain 1cg5B in training set T0547 59 :IENIYGNFN 1cg5B 60 :ADKVQRALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28535 # 1h70A.59.35 read from T0547.t2k.many.frag # found chain 1h70A in training set T0547 59 :IENIYGNFN 1h70A 35 :HNAYIRALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28536 # 1r5iD.59.54 read from T0547.t2k.many.frag # found chain 1r5iD in template set T0547 59 :IENIYGNFN 1r5iD 52 :VNQFYRHAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28537 # 1w9cA.59.42 read from T0547.t2k.many.frag # found chain 1w9cA in template set T0547 59 :IENIYGNFN 1w9cA 749 :RTVKRETLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28538 # 1wmwA.59.134 read from T0547.t2k.many.frag # found chain 1wmwA in training set T0547 59 :IENIYGNFN 1wmwA 135 :FHEVVRRTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28539 # 1k0fA.59.135 read from T0547.t2k.many.frag # found chain 1k0fA in template set T0547 59 :IENIYGNFN 1k0fA 167 :YQAYQQQLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28540 # 2d0tA.59.202 read from T0547.t2k.many.frag # found chain 2d0tA in template set T0547 59 :IENIYGNFN 2d0tA 200 :LLEIASCLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28541 # 1h6gA.59.43 read from T0547.t2k.many.frag # found chain 1h6gA in template set T0547 59 :IENIYGNFN 1h6gA 420 :AQVFREHAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28542 # 1ryoA.59.18 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 59 :IENIYGNFN 1ryoA 19 :CQSFRDHMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28543 # 1vkmA.59.45 read from T0547.t2k.many.frag # found chain 1vkmA in template set T0547 59 :IENIYGNFN 1vkmA 34 :FRRAKEISR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28544 # 2a1rA.59.11 read from T0547.t2k.many.frag # found chain 2a1rA in template set T0547 59 :IENIYGNFN 2a1rA 12 :LHKVYQAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28545 # 1s0pA.59.30 read from T0547.t2k.many.frag # found chain 1s0pA in template set T0547 59 :IENIYGNFN 1s0pA 81 :VEQLVKAID Number of specific fragments extracted= 1 number of extra gaps= 0 total=28546 # 2fn0A.59.181 read from T0547.t2k.many.frag # found chain 2fn0A in template set T0547 59 :IENIYGNFN 2fn0A 179 :VARAVAEIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28547 # 1vdkA.59.163 read from T0547.t2k.many.frag # found chain 1vdkA in training set T0547 59 :IENIYGNFN 1vdkA 164 :VEGLIRTFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28548 # 1u0fA.59.125 read from T0547.t2k.many.frag # found chain 1u0fA in template set T0547 59 :IENIYGNFN 1u0fA 125 :LDKMKSFCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28549 2btoA expands to /projects/compbio/data/pdb/2bto.pdb.gz 2btoA:# 2btoA.59.116 read from T0547.t2k.many.frag # adding 2btoA to template set # found chain 2btoA in template set T0547 59 :IENIYGNFN 2btoA 117 :LPEVMSRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28550 # 2fupA.59.29 read from T0547.t2k.many.frag # found chain 2fupA in training set T0547 59 :IENIYGNFN 2fupA 18 :ANQLLQLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28551 # 1u7lA.59.64 read from T0547.t2k.many.frag # found chain 1u7lA in training set T0547 59 :IENIYGNFN 1u7lA 65 :SEELSKVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28552 # 1o9rA.59.54 read from T0547.t2k.many.frag # found chain 1o9rA in training set T0547 59 :IENIYGNFN 1o9rA 55 :LDTFRTQLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28553 # 1ie9A.59.14 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 59 :IENIYGNFN 1ie9A 132 :IAILLDAHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28554 # 1t6uA.59.17 read from T0547.t2k.many.frag # found chain 1t6uA in training set T0547 59 :IENIYGNFN 1t6uA 18 :AESVKAVQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28555 1gqeA expands to /projects/compbio/data/pdb/1gqe.pdb.gz 1gqeA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1gqeA.59.10 read from T0547.t2k.many.frag # adding 1gqeA to template set # found chain 1gqeA in template set T0547 59 :IENIYGNFN 1gqeA 11 :IQDLTERSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28556 # 1nw3A.60.75 read from T0547.t2k.many.frag # found chain 1nw3A in template set T0547 60 :ENIYGNFNK 1nw3A 76 :DKYNRAIDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28557 # 1of8A.60.88 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 60 :ENIYGNFNK 1of8A 89 :LRLKKLSDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28558 # 2a7mA.60.217 read from T0547.t2k.many.frag # found chain 2a7mA in training set T0547 60 :ENIYGNFNK 2a7mA 218 :KRLKEVVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28559 # 1n5uA.60.43 read from T0547.t2k.many.frag # found chain 1n5uA in template set T0547 60 :ENIYGNFNK 1n5uA 44 :NEVTEFAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28560 # 2a3nA.60.32 read from T0547.t2k.many.frag # found chain 2a3nA in training set T0547 60 :ENIYGNFNK 2a3nA 21 :REIIAARQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28561 # 1nogA.60.32 read from T0547.t2k.many.frag # found chain 1nogA in training set T0547 60 :ENIYGNFNK 1nogA 33 :DELNSFIGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28562 # 1cg5B.60.60 read from T0547.t2k.many.frag # found chain 1cg5B in training set T0547 60 :ENIYGNFNK 1cg5B 61 :DKVQRALGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28563 # 1w9cA.60.43 read from T0547.t2k.many.frag # found chain 1w9cA in template set T0547 60 :ENIYGNFNK 1w9cA 750 :TVKRETLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28564 # 1qv9A.60.53 read from T0547.t2k.many.frag # found chain 1qv9A in training set T0547 60 :ENIYGNFNK 1qv9A 54 :EMALDIAED Number of specific fragments extracted= 1 number of extra gaps= 0 total=28565 # 1h6gA.60.44 read from T0547.t2k.many.frag # found chain 1h6gA in template set T0547 60 :ENIYGNFNK 1h6gA 421 :QVFREHANK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28566 # 1ryoA.60.19 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 60 :ENIYGNFNK 1ryoA 20 :QSFRDHMKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28567 # 2d0tA.60.203 read from T0547.t2k.many.frag # found chain 2d0tA in template set T0547 60 :ENIYGNFNK 2d0tA 201 :LEIASCLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28568 # 1vdkA.60.164 read from T0547.t2k.many.frag # found chain 1vdkA in training set T0547 60 :ENIYGNFNK 1vdkA 165 :EGLIRTFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28569 # 1vkmA.60.46 read from T0547.t2k.many.frag # found chain 1vkmA in template set T0547 60 :ENIYGNFNK 1vkmA 35 :RRAKEISRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28570 # 1k0fA.60.136 read from T0547.t2k.many.frag # found chain 1k0fA in template set T0547 60 :ENIYGNFNK 1k0fA 168 :QAYQQQLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28571 # 1ie9A.60.15 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 60 :ENIYGNFNK 1ie9A 133 :AILLDAHHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28572 # 1t92A.60.16 read from T0547.t2k.many.frag # found chain 1t92A in training set T0547 60 :ENIYGNFNK 1t92A 41 :VALEGALDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28573 1k87A expands to /projects/compbio/data/pdb/1k87.pdb.gz 1k87A:# 1k87A.60.301 read from T0547.t2k.many.frag # adding 1k87A to template set # found chain 1k87A in template set T0547 60 :ENIYGNFNK 1k87A 302 :VSYQQAIHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28574 # 1o9rA.60.55 read from T0547.t2k.many.frag # found chain 1o9rA in training set T0547 60 :ENIYGNFNK 1o9rA 56 :DTFRTQLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28575 # 1t6uA.60.18 read from T0547.t2k.many.frag # found chain 1t6uA in training set T0547 60 :ENIYGNFNK 1t6uA 19 :ESVKAVQEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28576 # 1aep.60.11 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 60 :ENIYGNFNK 1aep 12 :QQLNHTIVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28577 # 1p1jA.60.220 read from T0547.t2k.many.frag # found chain 1p1jA in training set T0547 60 :ENIYGNFNK 1p1jA 221 :QRIRRDIQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28578 # 1u7lA.60.65 read from T0547.t2k.many.frag # found chain 1u7lA in training set T0547 60 :ENIYGNFNK 1u7lA 66 :EELSKVDNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28579 # 2a1rA.60.12 read from T0547.t2k.many.frag # found chain 2a1rA in template set T0547 60 :ENIYGNFNK 2a1rA 13 :HKVYQAIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28580 # 1bf5A.60.11 read from T0547.t2k.many.frag # found chain 1bf5A in template set T0547 60 :ENIYGNFNK 1bf5A 147 :RNVKDKVMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=28581 # 1wmwA.60.135 read from T0547.t2k.many.frag # found chain 1wmwA in training set T0547 60 :ENIYGNFNK 1wmwA 136 :HEVVRRTAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28582 # 2btoA.60.117 read from T0547.t2k.many.frag # found chain 2btoA in template set T0547 60 :ENIYGNFNK 2btoA 118 :PEVMSRLDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28583 # 1xfiA.60.128 read from T0547.t2k.many.frag # found chain 1xfiA in training set T0547 60 :ENIYGNFNK 1xfiA 129 :AKAISLFPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28584 # 1s0pA.60.31 read from T0547.t2k.many.frag # found chain 1s0pA in template set T0547 60 :ENIYGNFNK 1s0pA 82 :EQLVKAIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28585 # 7odcA.60.52 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 60 :ENIYGNFNK 7odcA 53 :LRWLKALPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28586 # 1nw3A.61.76 read from T0547.t2k.many.frag # found chain 1nw3A in template set T0547 61 :NIYGNFNKA 1nw3A 77 :KYNRAIDSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28587 # 1of8A.61.89 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 61 :NIYGNFNKA 1of8A 90 :RLKKLSDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28588 # 1n5uA.61.44 read from T0547.t2k.many.frag # found chain 1n5uA in template set T0547 61 :NIYGNFNKA 1n5uA 45 :EVTEFAKTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=28589 # 1qv9A.61.54 read from T0547.t2k.many.frag # found chain 1qv9A in training set T0547 61 :NIYGNFNKA 1qv9A 55 :MALDIAEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28590 # 2a7mA.61.218 read from T0547.t2k.many.frag # found chain 2a7mA in training set T0547 61 :NIYGNFNKA 2a7mA 219 :RLKEVVKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28591 # 2btoA.61.118 read from T0547.t2k.many.frag # found chain 2btoA in template set T0547 61 :NIYGNFNKA 2btoA 119 :EVMSRLDYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28592 # 2a3nA.61.33 read from T0547.t2k.many.frag # found chain 2a3nA in training set T0547 61 :NIYGNFNKA 2a3nA 22 :EIIAARQKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28593 # 1w9cA.61.44 read from T0547.t2k.many.frag # found chain 1w9cA in template set T0547 61 :NIYGNFNKA 1w9cA 751 :VKRETLKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28594 # 1nogA.61.33 read from T0547.t2k.many.frag # found chain 1nogA in training set T0547 61 :NIYGNFNKA 1nogA 34 :ELNSFIGYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28595 # 1cg5B.61.61 read from T0547.t2k.many.frag # found chain 1cg5B in training set T0547 61 :NIYGNFNKA 1cg5B 62 :KVQRALGEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28596 # 2d0tA.61.204 read from T0547.t2k.many.frag # found chain 2d0tA in template set T0547 61 :NIYGNFNKA 2d0tA 202 :EIASCLEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28597 # 1h6gA.61.45 read from T0547.t2k.many.frag # found chain 1h6gA in template set T0547 61 :NIYGNFNKA 1h6gA 422 :VFREHANKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28598 # 1ryoA.61.20 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)A69 (1ryoA)V29 because G (3-10) conformation "forbidden" or filtered. T0547 61 :NIYGNFNK 1ryoA 21 :SFRDHMKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28599 # 1vdkA.61.165 read from T0547.t2k.many.frag # found chain 1vdkA in training set T0547 61 :NIYGNFNKA 1vdkA 166 :GLIRTFTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28600 # 1k0fA.61.137 read from T0547.t2k.many.frag # found chain 1k0fA in template set T0547 61 :NIYGNFNKA 1k0fA 169 :AYQQQLDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28601 # 1vkmA.61.47 read from T0547.t2k.many.frag # found chain 1vkmA in template set T0547 61 :NIYGNFNKA 1vkmA 36 :RAKEISREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28602 # 1wmwA.61.136 read from T0547.t2k.many.frag # found chain 1wmwA in training set T0547 61 :NIYGNFNKA 1wmwA 137 :EVVRRTAYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28603 # 1t92A.61.17 read from T0547.t2k.many.frag # found chain 1t92A in training set T0547 61 :NIYGNFNKA 1t92A 42 :ALEGALDMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28604 # 1ie9A.61.16 read from T0547.t2k.many.frag # found chain 1ie9A in training set Warning: unaligning (T0547)A69 (1ie9A)T142 because G (3-10) conformation "forbidden" or filtered. T0547 61 :NIYGNFNK 1ie9A 134 :ILLDAHHK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28605 # 1p1jA.61.221 read from T0547.t2k.many.frag # found chain 1p1jA in training set T0547 61 :NIYGNFNKA 1p1jA 222 :RIRRDIQNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28606 # 1s0pA.61.32 read from T0547.t2k.many.frag # found chain 1s0pA in template set T0547 61 :NIYGNFNKA 1s0pA 83 :QLVKAIDAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28607 # 1xfiA.61.129 read from T0547.t2k.many.frag # found chain 1xfiA in training set T0547 61 :NIYGNFNKA 1xfiA 130 :KAISLFPQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28608 # 1o9rA.61.56 read from T0547.t2k.many.frag # found chain 1o9rA in training set T0547 61 :NIYGNFNKA 1o9rA 57 :TFRTQLDNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28609 # 1k87A.61.302 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 61 :NIYGNFNKA 1k87A 303 :SYQQAIHAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28610 # 2bryA.61.32 read from T0547.t2k.many.frag # found chain 2bryA in training set T0547 61 :NIYGNFNKA 2bryA 25 :DVLSSFQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28611 # 2a1rA.61.13 read from T0547.t2k.many.frag # found chain 2a1rA in template set T0547 61 :NIYGNFNKA 2a1rA 14 :KVYQAIEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28612 # 1u7lA.61.66 read from T0547.t2k.many.frag # found chain 1u7lA in training set T0547 61 :NIYGNFNKA 1u7lA 67 :ELSKVDNQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28613 # 1aep.61.12 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 61 :NIYGNFNKA 1aep 13 :QLNHTIVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28614 # 1gqeA.61.12 read from T0547.t2k.many.frag # found chain 1gqeA in template set T0547 61 :NIYGNFNKA 1gqeA 13 :DLTERSDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28615 # 1t6uA.61.19 read from T0547.t2k.many.frag # found chain 1t6uA in training set T0547 61 :NIYGNFNKA 1t6uA 20 :SVKAVQEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28616 # 1nw3A.62.77 read from T0547.t2k.many.frag # found chain 1nw3A in template set T0547 62 :IYGNFNKAR 1nw3A 78 :YNRAIDSIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28617 # 1n5uA.62.45 read from T0547.t2k.many.frag # found chain 1n5uA in template set T0547 62 :IYGNFNKAR 1n5uA 46 :VTEFAKTCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28618 # 1w9cA.62.45 read from T0547.t2k.many.frag # found chain 1w9cA in template set T0547 62 :IYGNFNKAR 1w9cA 752 :KRETLKLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28619 # 2d0tA.62.205 read from T0547.t2k.many.frag # found chain 2d0tA in template set T0547 62 :IYGNFNKAR 2d0tA 203 :IASCLEKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28620 # 1vdkA.62.166 read from T0547.t2k.many.frag # found chain 1vdkA in training set T0547 62 :IYGNFNKAR 1vdkA 167 :LIRTFTAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28621 # 2btoA.62.119 read from T0547.t2k.many.frag # found chain 2btoA in template set T0547 62 :IYGNFNKAR 2btoA 120 :VMSRLDYEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28622 # 1t92A.62.18 read from T0547.t2k.many.frag # found chain 1t92A in training set Warning: unaligning (T0547)G64 (1t92A)G45 because H (helix) conformation "forbidden" or filtered. T0547 62 :IY 1t92A 43 :LE T0547 65 :NFNKAR 1t92A 46 :ALDMYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28624 # 1nogA.62.34 read from T0547.t2k.many.frag # found chain 1nogA in training set T0547 62 :IYGNFNKAR 1nogA 35 :LNSFIGYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28625 # 1cg5B.62.62 read from T0547.t2k.many.frag # found chain 1cg5B in training set T0547 62 :IYGNFNKAR 1cg5B 63 :VQRALGEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28626 # 2bryA.62.33 read from T0547.t2k.many.frag # found chain 2bryA in training set T0547 62 :IYGNFNKAR 2bryA 26 :VLSSFQGLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=28627 # 1k87A.62.303 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 62 :IYGNFNKAR 1k87A 304 :YQQAIHAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28628 # 1p1jA.62.222 read from T0547.t2k.many.frag # found chain 1p1jA in training set T0547 62 :IYGNFNKAR 1p1jA 223 :IRRDIQNFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28629 # 1u7lA.62.67 read from T0547.t2k.many.frag # found chain 1u7lA in training set T0547 62 :IYGNFNKAR 1u7lA 68 :LSKVDNQIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28630 # 1aep.62.13 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 62 :IYGNFNKAR 1aep 14 :LNHTIVNAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28631 # 1of8A.62.90 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 62 :IYGNFNKAR 1of8A 91 :LKKLSDELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28632 1t1uA expands to /projects/compbio/data/pdb/1t1u.pdb.gz 1t1uA:# 1t1uA.62.388 read from T0547.t2k.many.frag # adding 1t1uA to template set # found chain 1t1uA in template set Warning: unaligning (T0547)Y63 because of BadResidue code BAD_PEPTIDE in next template residue (1t1uA)E392 Warning: unaligning (T0547)G64 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)E392 T0547 62 :I 1t1uA 390 :S T0547 65 :NFNKAR 1t1uA 393 :KLQRIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28634 # 1o9rA.62.57 read from T0547.t2k.many.frag # found chain 1o9rA in training set T0547 62 :IYGNFNKAR 1o9rA 58 :FRTQLDNHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28635 # 1h6gA.62.46 read from T0547.t2k.many.frag # found chain 1h6gA in template set T0547 62 :IYGNFNKAR 1h6gA 423 :FREHANKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28636 # 1ryoA.62.21 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 62 :IYGNFNKAR 1ryoA 22 :FRDHMKSVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28637 # 1k0fA.62.138 read from T0547.t2k.many.frag # found chain 1k0fA in template set T0547 62 :IYGNFNKAR 1k0fA 170 :YQQQLDKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28638 1ez3A expands to /projects/compbio/data/pdb/1ez3.pdb.gz 1ez3A:# 1ez3A.62.16 read from T0547.t2k.many.frag # adding 1ez3A to template set # found chain 1ez3A in template set T0547 62 :IYGNFNKAR 1ez3A 40 :IRGFIDKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28639 # 1gqeA.62.13 read from T0547.t2k.many.frag # found chain 1gqeA in template set T0547 62 :IYGNFNKAR 1gqeA 14 :LTERSDVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28640 1r0dA expands to /projects/compbio/data/pdb/1r0d.pdb.gz 1r0dA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1r0dA.62.24 read from T0547.t2k.many.frag # adding 1r0dA to template set # found chain 1r0dA in template set T0547 62 :IYGNFNKAR 1r0dA 790 :TSAAIEDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28641 # 2cx6A.62.68 read from T0547.t2k.many.frag # found chain 2cx6A in template set T0547 62 :IYGNFNKAR 2cx6A 69 :LILLFDEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28642 # 2a3nA.62.34 read from T0547.t2k.many.frag # found chain 2a3nA in training set Warning: unaligning (T0547)N65 (2a3nA)A26 because G (3-10) conformation "forbidden" or filtered. T0547 62 :IYG 2a3nA 23 :IIA T0547 66 :FNKAR 2a3nA 27 :RQKAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28644 1wiwA expands to /projects/compbio/data/pdb/1wiw.pdb.gz 1wiwA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wiwA.62.130 read from T0547.t2k.many.frag # adding 1wiwA to template set # found chain 1wiwA in template set T0547 62 :IYGNFNKAR 1wiwA 131 :VDEALLEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=28645 1dpgA expands to /projects/compbio/data/pdb/1dpg.pdb.gz 1dpgA:# 1dpgA.62.94 read from T0547.t2k.many.frag # adding 1dpgA to template set # found chain 1dpgA in template set T0547 62 :IYGNFNKAR 1dpgA 95 :LKEAIEEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28646 # 1mswD.62.80 read from T0547.t2k.many.frag # found chain 1mswD in template set T0547 62 :IYGNFNKAR 1mswD 81 :MIARINDWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28647 # 1yzyA.62.178 read from T0547.t2k.many.frag # found chain 1yzyA in template set T0547 62 :IYGNFNKAR 1yzyA 178 :VQECFAELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28648 # 1t6uA.62.20 read from T0547.t2k.many.frag # found chain 1t6uA in training set T0547 62 :IYGNFNKAR 1t6uA 21 :VKAVQEKMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28649 # 1nw3A.63.78 read from T0547.t2k.many.frag # found chain 1nw3A in template set T0547 63 :YGNFNKARK 1nw3A 79 :NRAIDSIHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28650 # 1n5uA.63.46 read from T0547.t2k.many.frag # found chain 1n5uA in template set T0547 63 :YGNFNKARK 1n5uA 47 :TEFAKTCVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28651 # 2d0tA.63.206 read from T0547.t2k.many.frag # found chain 2d0tA in template set T0547 63 :YGNFNKARK 2d0tA 204 :ASCLEKALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28652 # 1vdkA.63.167 read from T0547.t2k.many.frag # found chain 1vdkA in training set T0547 63 :YGNFNKARK 1vdkA 168 :IRTFTAKAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28653 # 1nogA.63.35 read from T0547.t2k.many.frag # found chain 1nogA in training set T0547 63 :YGNFNKARK 1nogA 36 :NSFIGYALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28654 # 1w9cA.63.46 read from T0547.t2k.many.frag # found chain 1w9cA in template set T0547 63 :YGNFNKARK 1w9cA 753 :RETLKLISG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28655 # 1t92A.63.19 read from T0547.t2k.many.frag # found chain 1t92A in training set T0547 63 :YGNFNKARK 1t92A 44 :EGALDMYKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28656 # 1cg5B.63.63 read from T0547.t2k.many.frag # found chain 1cg5B in training set T0547 63 :YGNFNKARK 1cg5B 64 :QRALGEAID Number of specific fragments extracted= 1 number of extra gaps= 0 total=28657 # 2btoA.63.120 read from T0547.t2k.many.frag # found chain 2btoA in template set T0547 63 :YGNFNKARK 2btoA 121 :MSRLDYEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=28658 # 1gqeA.63.14 read from T0547.t2k.many.frag # found chain 1gqeA in template set T0547 63 :YGNFNKARK 1gqeA 15 :TERSDVLRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28659 # 2bryA.63.34 read from T0547.t2k.many.frag # found chain 2bryA in training set T0547 63 :YGNFNKARK 2bryA 27 :LSSFQGLCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28660 # 1aep.63.14 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 63 :YGNFNKARK 1aep 15 :NHTIVNAAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28661 # 1u7lA.63.68 read from T0547.t2k.many.frag # found chain 1u7lA in training set T0547 63 :YGNFNKARK 1u7lA 69 :SKVDNQIGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28662 # 1p1jA.63.223 read from T0547.t2k.many.frag # found chain 1p1jA in training set T0547 63 :YGNFNKARK 1p1jA 224 :RRDIQNFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28663 # 1k0fA.63.139 read from T0547.t2k.many.frag # found chain 1k0fA in template set T0547 63 :YGNFNKARK 1k0fA 171 :QQQLDKLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28664 # 1o9rA.63.58 read from T0547.t2k.many.frag # found chain 1o9rA in training set T0547 63 :YGNFNKARK 1o9rA 59 :RTQLDNHGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28665 # 1t1uA.63.389 read from T0547.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)Y63 because of BadResidue code BAD_PEPTIDE in next template residue (1t1uA)E392 Warning: unaligning (T0547)G64 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)E392 T0547 65 :NFNKARK 1t1uA 393 :KLQRIVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28666 # 1dpgA.63.95 read from T0547.t2k.many.frag # found chain 1dpgA in template set T0547 63 :YGNFNKARK 1dpgA 96 :KEAIEEAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28667 1zwwA expands to /projects/compbio/data/pdb/1zww.pdb.gz 1zwwA:# 1zwwA.63.47 read from T0547.t2k.many.frag # adding 1zwwA to template set # found chain 1zwwA in template set T0547 63 :YGNFNKARK 1zwwA 48 :MEIMTKTIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28668 # 2fupA.63.33 read from T0547.t2k.many.frag # found chain 2fupA in training set T0547 63 :YGNFNKARK 2fupA 22 :LQLVDEEFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28669 # 1wiwA.63.131 read from T0547.t2k.many.frag # found chain 1wiwA in template set T0547 63 :YGNFNKARK 1wiwA 132 :DEALLEERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28670 # 1woyA.63.74 read from T0547.t2k.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)G64 (1woyA)G76 because H (helix) conformation "forbidden" or filtered. T0547 63 :Y 1woyA 75 :S T0547 65 :NFNKARK 1woyA 77 :RFKRAWD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28672 # 1ez3A.63.17 read from T0547.t2k.many.frag # found chain 1ez3A in template set Warning: unaligning (T0547)G64 (1ez3A)G42 because H (helix) conformation "forbidden" or filtered. T0547 63 :Y 1ez3A 41 :R T0547 65 :NFNKARK 1ez3A 43 :FIDKIAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28674 # 2cx6A.63.69 read from T0547.t2k.many.frag # found chain 2cx6A in template set T0547 63 :YGNFNKARK 2cx6A 70 :ILLFDEAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28675 # 1r0dA.63.25 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 63 :YGNFNKARK 1r0dA 791 :SAAIEDAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28676 # 1ct5A.63.21 read from T0547.t2k.many.frag # found chain 1ct5A in template set T0547 63 :YGNFNKARK 1ct5A 23 :REVVNAEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28677 # 1xfiA.63.131 read from T0547.t2k.many.frag # found chain 1xfiA in training set T0547 63 :YGNFNKARK 1xfiA 132 :ISLFPQVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28678 # 1jbwA.63.102 read from T0547.t2k.many.frag # found chain 1jbwA in template set T0547 63 :YGNFNKARK 1jbwA 103 :RAALERLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28679 # 1k87A.63.304 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 63 :YGNFNKARK 1k87A 305 :QQAIHAIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28680 # 1mswD.63.81 read from T0547.t2k.many.frag # found chain 1mswD in template set T0547 63 :YGNFNKARK 1mswD 82 :IARINDWFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28681 # 1nw3A.64.79 read from T0547.t2k.many.frag # found chain 1nw3A in template set T0547 64 :GNFNKARKE 1nw3A 80 :RAIDSIHQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28682 # 2d0tA.64.207 read from T0547.t2k.many.frag # found chain 2d0tA in template set T0547 64 :GNFNKARKE 2d0tA 205 :SCLEKALQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28683 # 1nogA.64.36 read from T0547.t2k.many.frag # found chain 1nogA in training set T0547 64 :GNFNKARKE 1nogA 37 :SFIGYALVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28684 # 1n5uA.64.47 read from T0547.t2k.many.frag # found chain 1n5uA in template set T0547 64 :GNFNKARKE 1n5uA 48 :EFAKTCVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28685 # 2bryA.64.35 read from T0547.t2k.many.frag # found chain 2bryA in training set T0547 64 :GNFNKARKE 2bryA 28 :SSFQGLCRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28686 # 1gqeA.64.15 read from T0547.t2k.many.frag # found chain 1gqeA in template set T0547 64 :GNFNKARKE 1gqeA 16 :ERSDVLRGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28687 # 1w9cA.64.47 read from T0547.t2k.many.frag # found chain 1w9cA in template set T0547 64 :GNFNKARKE 1w9cA 754 :ETLKLISGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=28688 # 2btoA.64.121 read from T0547.t2k.many.frag # found chain 2btoA in template set T0547 64 :GNFNKARKE 2btoA 122 :SRLDYEIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28689 # 1cg5B.64.64 read from T0547.t2k.many.frag # found chain 1cg5B in training set T0547 64 :GNFNKARKE 1cg5B 65 :RALGEAIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28690 # 1aep.64.15 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 64 :GNFNKARKE 1aep 16 :HTIVNAAHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28691 # 1t92A.64.20 read from T0547.t2k.many.frag # found chain 1t92A in training set Warning: unaligning (T0547)G64 (1t92A)G45 because H (helix) conformation "forbidden" or filtered. T0547 65 :NFNKARKE 1t92A 46 :ALDMYKLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28692 # 1dpgA.64.96 read from T0547.t2k.many.frag # found chain 1dpgA in template set T0547 64 :GNFNKARKE 1dpgA 97 :EAIEEAADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28693 # 2fupA.64.34 read from T0547.t2k.many.frag # found chain 2fupA in training set T0547 64 :GNFNKARKE 2fupA 23 :QLVDEEFQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28694 # 1zwwA.64.48 read from T0547.t2k.many.frag # found chain 1zwwA in template set T0547 64 :GNFNKARKE 1zwwA 49 :EIMTKTIEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28695 # 2cx6A.64.70 read from T0547.t2k.many.frag # found chain 2cx6A in template set T0547 64 :GNFNKARKE 2cx6A 71 :LLFDEAEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28696 # 1t1uA.64.390 read from T0547.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)G64 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)E392 T0547 65 :NFNKARKE 1t1uA 393 :KLQRIVKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=28697 # 1vdkA.64.168 read from T0547.t2k.many.frag # found chain 1vdkA in training set T0547 64 :GNFNKARKE 1vdkA 169 :RTFTAKAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28698 # 1kpf.64.78 read from T0547.t2k.many.frag # found chain 1kpf in training set T0547 64 :GNFNKARKE 1kpf 79 :IVGKKCAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28699 # 1lvaA.64.72 read from T0547.t2k.many.frag # found chain 1lvaA in template set T0547 64 :GNFNKARKE 1lvaA 449 :RALEEFHSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28700 # 1woyA.64.75 read from T0547.t2k.many.frag # found chain 1woyA in template set T0547 64 :GNFNKARKE 1woyA 76 :GRFKRAWDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28701 # 1r0dA.64.26 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 64 :GNFNKARKE 1r0dA 792 :AAIEDAVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28702 # 1ez3A.64.18 read from T0547.t2k.many.frag # found chain 1ez3A in template set Warning: unaligning (T0547)G64 (1ez3A)G42 because H (helix) conformation "forbidden" or filtered. T0547 65 :NFNKARKE 1ez3A 43 :FIDKIAEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=28703 # 1p1jA.64.224 read from T0547.t2k.many.frag # found chain 1p1jA in training set T0547 64 :GNFNKARKE 1p1jA 225 :RDIQNFKEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28704 # 1mswD.64.82 read from T0547.t2k.many.frag # found chain 1mswD in template set T0547 64 :GNFNKARKE 1mswD 83 :ARINDWFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28705 # 1sg6A.64.56 read from T0547.t2k.many.frag # found chain 1sg6A in training set T0547 64 :GNFNKARKE 1sg6A 57 :EAFRKRAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28706 # 1k87A.64.305 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 64 :GNFNKARKE 1k87A 306 :QAIHAIGKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28707 # 1u7lA.64.69 read from T0547.t2k.many.frag # found chain 1u7lA in training set T0547 64 :GNFNKARKE 1u7lA 70 :KVDNQIGAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28708 1he1A expands to /projects/compbio/data/pdb/1he1.pdb.gz 1he1A:# 1he1A.64.13 read from T0547.t2k.many.frag # adding 1he1A to template set # found chain 1he1A in template set T0547 64 :GNFNKARKE 1he1A 108 :QALPMTLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28709 # 1jbwA.64.103 read from T0547.t2k.many.frag # found chain 1jbwA in template set T0547 64 :GNFNKARKE 1jbwA 104 :AALERLQQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28710 # 1xfiA.64.132 read from T0547.t2k.many.frag # found chain 1xfiA in training set T0547 64 :GNFNKARKE 1xfiA 133 :SLFPQVVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28711 # 2d0tA.65.208 read from T0547.t2k.many.frag # found chain 2d0tA in template set T0547 65 :NFNKARKEF 2d0tA 206 :CLEKALQVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28712 # 1dpgA.65.97 read from T0547.t2k.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)F73 (1dpgA)F106 because G (3-10) conformation "forbidden" or filtered. T0547 65 :NFNKARKE 1dpgA 98 :AIEEAADK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28713 # 1aep.65.16 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 65 :NFNKARKEF 1aep 17 :TIVNAAHEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28714 # 1nogA.65.37 read from T0547.t2k.many.frag # found chain 1nogA in training set T0547 65 :NFNKARKEF 1nogA 38 :FIGYALVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28715 # 1nw3A.65.80 read from T0547.t2k.many.frag # found chain 1nw3A in template set T0547 65 :NFNKARKEF 1nw3A 81 :AIDSIHQLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=28716 # 1cg5B.65.65 read from T0547.t2k.many.frag # found chain 1cg5B in training set T0547 65 :NFNKARKEF 1cg5B 66 :ALGEAIDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28717 # 1woyA.65.76 read from T0547.t2k.many.frag # found chain 1woyA in template set T0547 65 :NFNKARKEF 1woyA 77 :RFKRAWDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28718 # 1zwwA.65.49 read from T0547.t2k.many.frag # found chain 1zwwA in template set T0547 65 :NFNKARKEF 1zwwA 50 :IMTKTIEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28719 # 2btoA.65.122 read from T0547.t2k.many.frag # found chain 2btoA in template set T0547 65 :NFNKARKEF 2btoA 123 :RLDYEIDKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=28720 # 1t92A.65.21 read from T0547.t2k.many.frag # found chain 1t92A in training set T0547 65 :NFNKARKEF 1t92A 46 :ALDMYKLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28721 # 2bryA.65.36 read from T0547.t2k.many.frag # found chain 2bryA in training set T0547 65 :NFNKARKEF 2bryA 29 :SFQGLCRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28722 # 1kpf.65.79 read from T0547.t2k.many.frag # found chain 1kpf in training set T0547 65 :NFNKARKEF 1kpf 80 :VGKKCAADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28723 # 2cx6A.65.71 read from T0547.t2k.many.frag # found chain 2cx6A in template set T0547 65 :NFNKARKEF 2cx6A 72 :LFDEAEEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28724 # 1r0dA.65.27 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 65 :NFNKARKEF 1r0dA 793 :AIEDAVRRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28725 # 1vdkA.65.169 read from T0547.t2k.many.frag # found chain 1vdkA in training set T0547 65 :NFNKARKEF 1vdkA 170 :TFTAKAQAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28726 # 1n5uA.65.48 read from T0547.t2k.many.frag # found chain 1n5uA in template set T0547 65 :NFNKARKEF 1n5uA 49 :FAKTCVADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28727 # 1w9cA.65.48 read from T0547.t2k.many.frag # found chain 1w9cA in template set T0547 65 :NFNKARKEF 1w9cA 755 :TLKLISGWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28728 # 1mswD.65.83 read from T0547.t2k.many.frag # found chain 1mswD in template set T0547 65 :NFNKARKEF 1mswD 84 :RINDWFEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28729 1h6kA expands to /projects/compbio/data/pdb/1h6k.pdb.gz 1h6kA:# 1h6kA.65.91 read from T0547.t2k.many.frag # adding 1h6kA to template set # found chain 1h6kA in template set Warning: unaligning (T0547)F73 (1h6kA)N119 because L (left) conformation "forbidden" or filtered. T0547 65 :NFNKARKE 1h6kA 111 :QLKESLKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28730 # 1lvaA.65.73 read from T0547.t2k.many.frag # found chain 1lvaA in template set T0547 65 :NFNKARKEF 1lvaA 450 :ALEEFHSRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28731 # 1t1uA.65.391 read from T0547.t2k.many.frag # found chain 1t1uA in template set T0547 65 :NFNKARKEF 1t1uA 393 :KLQRIVKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28732 # 1sg6A.65.57 read from T0547.t2k.many.frag # found chain 1sg6A in training set T0547 65 :NFNKARKEF 1sg6A 58 :AFRKRAAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28733 1k47A expands to /projects/compbio/data/pdb/1k47.pdb.gz 1k47A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M WARNING: atom 19 has residue number 1 < previous residue 1002 in 1k47A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1k47A.65.73 read from T0547.t2k.many.frag # adding 1k47A to template set # found chain 1k47A in template set T0547 65 :NFNKARKEF 1k47A 72 :LMGDFLAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28734 # 1gqeA.65.16 read from T0547.t2k.many.frag # found chain 1gqeA in template set T0547 65 :NFNKARKEF 1gqeA 17 :RSDVLRGYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28735 # 1p1jA.65.225 read from T0547.t2k.many.frag # found chain 1p1jA in training set T0547 65 :NFNKARKEF 1p1jA 226 :DIQNFKEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28736 # 1wiwA.65.133 read from T0547.t2k.many.frag # found chain 1wiwA in template set T0547 65 :NFNKARKEF 1wiwA 134 :ALLEERRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28737 # 1s4bP.65.27 read from T0547.t2k.many.frag # found chain 1s4bP in template set T0547 65 :NFNKARKEF 1s4bP 43 :QTKRVYDQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28738 # 1xfiA.65.133 read from T0547.t2k.many.frag # found chain 1xfiA in training set T0547 65 :NFNKARKEF 1xfiA 134 :LFPQVVSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28739 # 1mf7A.65.28 read from T0547.t2k.many.frag # found chain 1mf7A in training set T0547 65 :NFNKARKEF 1mf7A 156 :FVSTVMEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28740 1t4fM expands to /projects/compbio/data/pdb/1t4f.pdb.gz 1t4fM:# 1t4fM.65.40 read from T0547.t2k.many.frag # adding 1t4fM to template set # found chain 1t4fM in template set T0547 65 :NFNKARKEF 1t4fM 56 :YLGQYIMTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28741 # 1dpgA.66.98 read from T0547.t2k.many.frag # found chain 1dpgA in template set T0547 66 :FNKARKEFG 1dpgA 99 :IEEAADKFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28742 # 1zwwA.66.50 read from T0547.t2k.many.frag # found chain 1zwwA in template set Warning: unaligning (T0547)G74 (1zwwA)Q59 because D (zeta) conformation "forbidden" or filtered. T0547 66 :FNKARKEF 1zwwA 51 :MTKTIEYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28743 # 2bryA.66.37 read from T0547.t2k.many.frag # found chain 2bryA in training set T0547 66 :FNKARKEFG 2bryA 30 :FQGLCRALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28744 # 2btoA.66.123 read from T0547.t2k.many.frag # found chain 2btoA in template set T0547 66 :FNKARKEFG 2btoA 124 :LDYEIDKCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28745 # 1kpf.66.80 read from T0547.t2k.many.frag # found chain 1kpf in training set T0547 66 :FNKARKEFG 1kpf 81 :GKKCAADLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28746 # 2d0tA.66.209 read from T0547.t2k.many.frag # found chain 2d0tA in template set T0547 66 :FNKARKEFG 2d0tA 207 :LEKALQVFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28747 # 1nogA.66.38 read from T0547.t2k.many.frag # found chain 1nogA in training set T0547 66 :FNKARKEFG 1nogA 39 :IGYALVLSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28748 # 1aep.66.17 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 66 :FNKARKEFG 1aep 18 :IVNAAHELH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28749 # 1nw3A.66.81 read from T0547.t2k.many.frag # found chain 1nw3A in template set T0547 66 :FNKARKEFG 1nw3A 82 :IDSIHQLWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28750 # 1gqeA.66.17 read from T0547.t2k.many.frag # found chain 1gqeA in template set T0547 66 :FNKARKEFG 1gqeA 18 :SDVLRGYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28751 # 1uekA.66.63 read from T0547.t2k.many.frag # found chain 1uekA in training set T0547 66 :FNKARKEFG 1uekA 64 :ASLYLEAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28752 1zc6A expands to /projects/compbio/data/pdb/1zc6.pdb.gz 1zc6A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zc6A.66.59 read from T0547.t2k.many.frag # adding 1zc6A to template set # found chain 1zc6A in template set T0547 66 :FNKARKEFG 1zc6A 60 :LEAAFQQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28753 # 1woyA.66.77 read from T0547.t2k.many.frag # found chain 1woyA in template set T0547 66 :FNKARKEFG 1woyA 78 :FKRAWDLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28754 # 1w9cA.66.49 read from T0547.t2k.many.frag # found chain 1w9cA in template set T0547 66 :FNKARKEFG 1w9cA 756 :LKLISGWVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28755 # 1mg7A.66.97 read from T0547.t2k.many.frag # found chain 1mg7A in training set T0547 66 :FNKARKEFG 1mg7A 104 :LRDFIDQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28756 # 1eu1A.66.96 read from T0547.t2k.many.frag # found chain 1eu1A in training set T0547 66 :FNKARKEFG 1eu1A 97 :LKRVQESYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28757 # 1cg5B.66.66 read from T0547.t2k.many.frag # found chain 1cg5B in training set T0547 66 :FNKARKEFG 1cg5B 67 :LGEAIDDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28758 # 1wiwA.66.134 read from T0547.t2k.many.frag # found chain 1wiwA in template set Warning: unaligning (T0547)G74 (1wiwA)G143 because P (beta_P) conformation "forbidden" or filtered. T0547 66 :FNKARKEF 1wiwA 135 :LLEERRRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28759 # 1n5uA.66.49 read from T0547.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0547)E72 (1n5uA)D56 because D (zeta) conformation "forbidden" or filtered. T0547 66 :FNKARK 1n5uA 50 :AKTCVA T0547 73 :FG 1n5uA 57 :ES Number of specific fragments extracted= 2 number of extra gaps= 1 total=28761 1yvhA expands to /projects/compbio/data/pdb/1yvh.pdb.gz 1yvhA:# 1yvhA.66.40 read from T0547.t2k.many.frag # adding 1yvhA to template set # found chain 1yvhA in template set T0547 66 :FNKARKEFG 1yvhA 63 :MDKVVRLCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28762 # 1k47A.66.74 read from T0547.t2k.many.frag # found chain 1k47A in template set T0547 66 :FNKARKEFG 1k47A 73 :MGDFLAVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28763 # 1lqvA.66.79 read from T0547.t2k.many.frag # found chain 1lqvA in training set T0547 66 :FNKARKEFG 1lqvA 80 :VRLVHQERT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28764 # 1koe.66.26 read from T0547.t2k.many.frag # found chain 1koe in training set Warning: unaligning (T0547)F73 (1koe)V171 because G (3-10) conformation "forbidden" or filtered. T0547 66 :FNKARKE 1koe 164 :CFQQARA T0547 74 :G 1koe 172 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=28766 # 1b8oA.66.173 read from T0547.t2k.many.frag # found chain 1b8oA in training set T0547 66 :FNKARKEFG 1b8oA 174 :AHSTWKQMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28767 # 1p1jA.66.226 read from T0547.t2k.many.frag # found chain 1p1jA in training set T0547 66 :FNKARKEFG 1p1jA 227 :IQNFKEENA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28768 1efyA expands to /projects/compbio/data/pdb/1efy.pdb.gz 1efyA:# 1efyA.66.20 read from T0547.t2k.many.frag # adding 1efyA to template set # found chain 1efyA in template set Warning: unaligning (T0547)F73 (1efyA)F689 because G (3-10) conformation "forbidden" or filtered. T0547 66 :FNKARKE 1efyA 682 :MKKAMVE T0547 74 :G 1efyA 690 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=28770 # 1jr2A.66.63 read from T0547.t2k.many.frag # found chain 1jr2A in template set T0547 66 :FNKARKEFG 1jr2A 43 :LPSFSEKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28771 # 1j2zA.66.227 read from T0547.t2k.many.frag # found chain 1j2zA in template set T0547 66 :FNKARKEFG 1j2zA 228 :AKLELEEHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28772 1u4qA expands to /projects/compbio/data/pdb/1u4q.pdb.gz 1u4qA:Skipped atom 328, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 330, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 332, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 334, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 336, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 338, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 340, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 342, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 344, because occupancy 0.350 <= existing 0.650 in 1u4qA Skipped atom 458, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 460, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 462, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 464, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 466, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 468, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 470, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 472, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 474, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 476, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 478, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 815, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 817, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 819, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 821, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 823, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 825, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 827, because occupancy 0.350 <= existing 0.650 in 1u4qA Skipped atom 829, because occupancy 0.350 <= existing 0.650 in 1u4qA Skipped atom 831, because occupancy 0.350 <= existing 0.650 in 1u4qA Skipped atom 833, because occupancy 0.350 <= existing 0.650 in 1u4qA Skipped atom 835, because occupancy 0.350 <= existing 0.650 in 1u4qA Skipped atom 1409, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1411, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1413, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1415, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1417, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1419, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1421, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1423, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1425, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1546, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1548, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1550, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1552, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1554, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1556, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1558, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1560, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1562, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1564, because occupancy 0.500 <= existing 0.500 in 1u4qA Skipped atom 1566, because occupancy 0.500 <= existing 0.500 in 1u4qA # 1u4qA.66.18 read from T0547.t2k.many.frag # adding 1u4qA to template set # found chain 1u4qA in template set T0547 66 :FNKARKEFG 1u4qA 1679 :LSEVEALLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28773 # 1pmi.66.80 read from T0547.t2k.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)F66 (1pmi)G82 because S (epsilon) conformation "forbidden" or filtered. T0547 67 :NKARKEFG 1pmi 83 :ESIITKFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=28774 # 1dpgA.67.99 read from T0547.t2k.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)F73 (1dpgA)F106 because G (3-10) conformation "forbidden" or filtered. T0547 67 :NKARKE 1dpgA 100 :EEAADK T0547 74 :GY 1dpgA 107 :DI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28776 # 1kpf.67.81 read from T0547.t2k.many.frag # found chain 1kpf in training set T0547 67 :NKARKEFGY 1kpf 82 :KKCAADLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28777 # 1zwwA.67.51 read from T0547.t2k.many.frag # found chain 1zwwA in template set Warning: unaligning (T0547)G74 (1zwwA)Q59 because D (zeta) conformation "forbidden" or filtered. T0547 67 :NKARKEF 1zwwA 52 :TKTIEYL T0547 75 :Y 1zwwA 60 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=28779 # 2bryA.67.38 read from T0547.t2k.many.frag # found chain 2bryA in training set T0547 67 :NKARKEFGY 2bryA 31 :QGLCRALGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28780 # 1koe.67.27 read from T0547.t2k.many.frag # found chain 1koe in training set T0547 67 :NKARKEFGY 1koe 165 :FQQARAVGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28781 # 1b8oA.67.174 read from T0547.t2k.many.frag # found chain 1b8oA in training set T0547 67 :NKARKEFGY 1b8oA 175 :HSTWKQMGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28782 # 1mg7A.67.98 read from T0547.t2k.many.frag # found chain 1mg7A in training set T0547 67 :NKARKEFGY 1mg7A 105 :RDFIDQLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28783 # 1lqvA.67.80 read from T0547.t2k.many.frag # found chain 1lqvA in training set Warning: unaligning (T0547)F73 (1lqvA)R87 because G (3-10) conformation "forbidden" or filtered. T0547 67 :NKARKE 1lqvA 81 :RLVHQE T0547 74 :GY 1lqvA 88 :TL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28785 1h6dA expands to /projects/compbio/data/pdb/1h6d.pdb.gz 1h6dA:# 1h6dA.67.122 read from T0547.t2k.many.frag # adding 1h6dA to template set # found chain 1h6dA in template set T0547 67 :NKARKEFGY 1h6dA 123 :KIVAAEYGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28786 # 2absA.67.50 read from T0547.t2k.many.frag # found chain 2absA in training set T0547 67 :NKARKEFGY 2absA 31 :SSFLDEFFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28787 # 1uc2A.67.215 read from T0547.t2k.many.frag # found chain 1uc2A in template set T0547 67 :NKARKEFGY 1uc2A 216 :PEVAKAYGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28788 # 1zc6A.67.60 read from T0547.t2k.many.frag # found chain 1zc6A in template set T0547 67 :NKARKEFGY 1zc6A 61 :EAAFQQAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28789 # 1uekA.67.64 read from T0547.t2k.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)Y75 (1uekA)Q73 because L (left) conformation "forbidden" or filtered. T0547 67 :NKARKEFG 1uekA 65 :SLYLEAAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=28790 # 2btoA.67.124 read from T0547.t2k.many.frag # found chain 2btoA in template set T0547 67 :NKARKEFGY 2btoA 125 :DYEIDKCDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28791 # 1p1jA.67.227 read from T0547.t2k.many.frag # found chain 1p1jA in training set T0547 67 :NKARKEFGY 1p1jA 228 :QNFKEENAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28792 # 1eu1A.67.97 read from T0547.t2k.many.frag # found chain 1eu1A in training set T0547 67 :NKARKEFGY 1eu1A 98 :KRVQESYGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28793 # 1kqpA.67.3 read from T0547.t2k.many.frag # found chain 1kqpA in training set T0547 67 :NKARKEFGY 1kqpA 4 :EKIMRELHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28794 # 1pmi.67.81 read from T0547.t2k.many.frag # found chain 1pmi in training set T0547 67 :NKARKEFGY 1pmi 83 :ESIITKFGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28795 # 1wiwA.67.135 read from T0547.t2k.many.frag # found chain 1wiwA in template set T0547 67 :NKARKEFGY 1wiwA 136 :LEERRRLGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28796 # 1n5uA.67.50 read from T0547.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0547)E72 (1n5uA)D56 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G74 (1n5uA)S58 because G (3-10) conformation "forbidden" or filtered. T0547 67 :NKARK 1n5uA 51 :KTCVA T0547 73 :F 1n5uA 57 :E T0547 75 :Y 1n5uA 59 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=28799 1bouA expands to /projects/compbio/data/pdb/1bou.pdb.gz 1bouA:# 1bouA.67.57 read from T0547.t2k.many.frag # adding 1bouA to template set # found chain 1bouA in template set T0547 67 :NKARKEFGY 1bouA 58 :SAYLDEWNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28800 # 1k47A.67.75 read from T0547.t2k.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)F73 (1k47A)R80 because G (3-10) conformation "forbidden" or filtered. T0547 67 :NKARKE 1k47A 74 :GDFLAV T0547 74 :GY 1k47A 81 :GQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28802 # 1v54H.67.72 read from T0547.t2k.many.frag # found chain 1v54H in training set Warning: unaligning (T0547)G74 (1v54H)T80 because G (3-10) conformation "forbidden" or filtered. T0547 67 :NKARKEF 1v54H 73 :DDRRAEG T0547 75 :Y 1v54H 81 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=28804 1cliA expands to /projects/compbio/data/pdb/1cli.pdb.gz 1cliA:# 1cliA.67.26 read from T0547.t2k.many.frag # adding 1cliA to template set # found chain 1cliA in template set Warning: unaligning (T0547)G74 (1cliA)R34 because P (beta_P) conformation "forbidden" or filtered. T0547 67 :NKARKEF 1cliA 27 :KGVVKKT T0547 75 :Y 1cliA 35 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=28806 # 1cg5B.67.67 read from T0547.t2k.many.frag # found chain 1cg5B in training set T0547 67 :NKARKEFGY 1cg5B 68 :GEAIDDLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28807 # 1j2zA.67.228 read from T0547.t2k.many.frag # found chain 1j2zA in template set T0547 67 :NKARKEFGY 1j2zA 229 :KLELEEHAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28808 # 1vdkA.67.171 read from T0547.t2k.many.frag # found chain 1vdkA in training set T0547 67 :NKARKEFGY 1vdkA 172 :TAKAQAFDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28809 # 1efyA.67.21 read from T0547.t2k.many.frag # found chain 1efyA in template set T0547 67 :NKARKEFGY 1efyA 683 :KKAMVEFEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28810 1p4xA expands to /projects/compbio/data/pdb/1p4x.pdb.gz 1p4xA:# 1p4xA.67.115 read from T0547.t2k.many.frag # adding 1p4xA to template set # found chain 1p4xA in template set Warning: unaligning (T0547)G74 (1p4xA)Q123 because N (gamma') conformation "forbidden" or filtered. T0547 67 :NKARKEF 1p4xA 116 :KQFNLAD T0547 75 :Y 1p4xA 124 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=28812 # 1nogA.67.39 read from T0547.t2k.many.frag # found chain 1nogA in training set T0547 67 :NKARKEFGY 1nogA 40 :GYALVLSRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=28813 # 1kpf.68.82 read from T0547.t2k.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)F73 (1kpf)L88 because G (3-10) conformation "forbidden" or filtered. T0547 68 :KARKE 1kpf 83 :KCAAD T0547 74 :GYK 1kpf 89 :GLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28815 # 1dpgA.68.100 read from T0547.t2k.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)K76 (1dpgA)D109 because N (gamma') conformation "forbidden" or filtered. T0547 68 :KARKEFGY 1dpgA 101 :EAADKFDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28816 # 1koe.68.28 read from T0547.t2k.many.frag # found chain 1koe in training set T0547 68 :KARKEFGYK 1koe 166 :QQARAVGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28817 # 1uekA.68.65 read from T0547.t2k.many.frag # found chain 1uekA in training set T0547 68 :KARKEFGYK 1uekA 66 :LYLEAAGQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28818 # 1zwwA.68.52 read from T0547.t2k.many.frag # found chain 1zwwA in template set T0547 68 :KARKEFGYK 1zwwA 53 :KTIEYLQPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28819 # 1uc2A.68.216 read from T0547.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)K76 (1uc2A)F225 because Y (epsilon') conformation "forbidden" or filtered. T0547 68 :KARKEFGY 1uc2A 217 :EVAKAYGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28820 # 1mg7A.68.99 read from T0547.t2k.many.frag # found chain 1mg7A in training set T0547 68 :KARKEFGYK 1mg7A 106 :DFIDQLKLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28821 # 1h6dA.68.123 read from T0547.t2k.many.frag # found chain 1h6dA in template set T0547 68 :KARKEFGYK 1h6dA 124 :IVAAEYGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28822 # 2bryA.68.39 read from T0547.t2k.many.frag # found chain 2bryA in training set T0547 68 :KARKEFGYK 2bryA 32 :GLCRALGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28823 # 1pmi.68.82 read from T0547.t2k.many.frag # found chain 1pmi in training set T0547 68 :KARKEFGYK 1pmi 84 :SIITKFGSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28824 # 2btoA.68.125 read from T0547.t2k.many.frag # found chain 2btoA in template set T0547 68 :KARKEFGYK 2btoA 126 :YEIDKCDNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28825 # 1kqpA.68.4 read from T0547.t2k.many.frag # found chain 1kqpA in training set T0547 68 :KARKEFGYK 1kqpA 5 :KIMRELHVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28826 # 1b8oA.68.175 read from T0547.t2k.many.frag # found chain 1b8oA in training set T0547 68 :KARKEFGYK 1b8oA 176 :STWKQMGEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28827 # 1zc6A.68.61 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)F73 (1zc6A)A67 because G (3-10) conformation "forbidden" or filtered. T0547 68 :KARKE 1zc6A 62 :AAFQQ T0547 74 :GYK 1zc6A 68 :GLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28829 # 1k47A.68.76 read from T0547.t2k.many.frag # found chain 1k47A in template set T0547 68 :KARKEFGYK 1k47A 75 :DFLAVRGQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28830 # 1eu1A.68.98 read from T0547.t2k.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)F73 (1eu1A)Y104 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G74 (1eu1A)G105 because S (epsilon) conformation "forbidden" or filtered. T0547 68 :KARKE 1eu1A 99 :RVQES T0547 75 :YK 1eu1A 106 :PT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28832 1gvnA expands to /projects/compbio/data/pdb/1gvn.pdb.gz 1gvnA:# 1gvnA.68.26 read from T0547.t2k.many.frag # adding 1gvnA to template set # found chain 1gvnA in template set Warning: unaligning (T0547)K76 (1gvnA)N35 because P (beta_P) conformation "forbidden" or filtered. T0547 68 :KARKEFGY 1gvnA 27 :NYVLNHEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28833 # 1sg6A.68.60 read from T0547.t2k.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)G74 (1sg6A)T67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y75 (1sg6A)P68 because C (cis) conformation "forbidden" or filtered. T0547 68 :KARKEF 1sg6A 61 :KRAAEI T0547 76 :K 1sg6A 69 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=28835 # 2absA.68.51 read from T0547.t2k.many.frag # found chain 2absA in training set Warning: unaligning (T0547)K76 (2absA)K40 because P (beta_P) conformation "forbidden" or filtered. T0547 68 :KARKEFGY 2absA 32 :SFLDEFFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28836 # 1gmxA.68.49 read from T0547.t2k.many.frag # found chain 1gmxA in training set T0547 68 :KARKEFGYK 1gmxA 50 :AFMRDNDFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28837 # 1lqvA.68.81 read from T0547.t2k.many.frag # found chain 1lqvA in training set Warning: unaligning (T0547)G74 (1lqvA)T88 because S (epsilon) conformation "forbidden" or filtered. T0547 68 :KARKEF 1lqvA 82 :LVHQER T0547 75 :YK 1lqvA 89 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28839 1wlfA expands to /projects/compbio/data/pdb/1wlf.pdb.gz 1wlfA:# 1wlfA.68.76 read from T0547.t2k.many.frag # adding 1wlfA to template set # found chain 1wlfA in template set T0547 68 :KARKEFGYK 1wlfA 79 :QVGQKLGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28840 2f2gA expands to /projects/compbio/data/pdb/2f2g.pdb.gz 2f2gA:Skipped atom 187, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 189, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 191, because occupancy 0.350 <= existing 0.650 in 2f2gA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1217, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 1219, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 1221, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 1223, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 1345, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 1347, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 1349, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 1351, because occupancy 0.350 <= existing 0.650 in 2f2gA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2f2gA.68.93 read from T0547.t2k.many.frag # adding 2f2gA to template set # found chain 2f2gA in template set Warning: unaligning (T0547)K76 (2f2gA)D102 because N (gamma') conformation "forbidden" or filtered. T0547 68 :KARKEFGY 2f2gA 94 :REGSKWDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=28841 1uddA expands to /projects/compbio/data/pdb/1udd.pdb.gz 1uddA:# 1uddA.68.88 read from T0547.t2k.many.frag # adding 1uddA to template set # found chain 1uddA in template set T0547 68 :KARKEFGYK 1uddA 89 :KLLKELDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28842 # 1jr2A.68.65 read from T0547.t2k.many.frag # found chain 1jr2A in template set T0547 68 :KARKEFGYK 1jr2A 45 :SFSEKLSHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28843 # 1n93X.68.172 read from T0547.t2k.many.frag # found chain 1n93X in training set T0547 68 :KARKEFGYK 1n93X 168 :TMMAALNRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28844 # 1v54H.68.73 read from T0547.t2k.many.frag # found chain 1v54H in training set T0547 68 :KARKEFGYK 1v54H 74 :DRRAEGTFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28845 # 1gudA.68.24 read from T0547.t2k.many.frag # found chain 1gudA in training set T0547 68 :KARKEFGYK 1gudA 25 :DEAKTLGVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28846 # 1ow1A.68.92 read from T0547.t2k.many.frag # found chain 1ow1A in training set T0547 68 :KARKEFGYK 1ow1A 3562 :GVARRMTVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28847 # 2cx6A.68.74 read from T0547.t2k.many.frag # found chain 2cx6A in template set Warning: unaligning (T0547)Y75 (2cx6A)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 68 :KARKEFG 2cx6A 75 :EAEEELE T0547 76 :K 2cx6A 83 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=28849 # 1kpf.69.83 read from T0547.t2k.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)F73 (1kpf)L88 because G (3-10) conformation "forbidden" or filtered. T0547 69 :ARKE 1kpf 84 :CAAD T0547 74 :GYKG 1kpf 89 :GLNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28851 # 1koe.69.29 read from T0547.t2k.many.frag # found chain 1koe in training set Warning: unaligning (T0547)G77 (1koe)G175 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 1koe 167 :QARAVGLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28852 # 1dpgA.69.101 read from T0547.t2k.many.frag # found chain 1dpgA in template set T0547 69 :ARKEFGYKG 1dpgA 102 :AADKFDIDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28853 # 1mg7A.69.100 read from T0547.t2k.many.frag # found chain 1mg7A in training set Warning: unaligning (T0547)K76 (1mg7A)H114 because G (3-10) conformation "forbidden" or filtered. T0547 69 :ARKEFGY 1mg7A 107 :FIDQLKL T0547 77 :G 1mg7A 115 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=28855 # 1uekA.69.66 read from T0547.t2k.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)F73 (1uekA)A71 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y75 (1uekA)Q73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1uekA)G75 because Y (epsilon') conformation "forbidden" or filtered. T0547 69 :ARKE 1uekA 67 :YLEA T0547 74 :G 1uekA 72 :G T0547 76 :K 1uekA 74 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=28858 # 1kqpA.69.5 read from T0547.t2k.many.frag # found chain 1kqpA in training set T0547 69 :ARKEFGYKG 1kqpA 6 :IMRELHVKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28859 # 1uc2A.69.217 read from T0547.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)G77 (1uc2A)E226 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 1uc2A 218 :VAKAYGLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=28860 # 1pmi.69.83 read from T0547.t2k.many.frag # found chain 1pmi in training set T0547 69 :ARKEFGYKG 1pmi 85 :IITKFGSSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28861 # 1h6dA.69.124 read from T0547.t2k.many.frag # found chain 1h6dA in template set T0547 69 :ARKEFGYKG 1h6dA 125 :VAAEYGVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28862 # 1zwwA.69.53 read from T0547.t2k.many.frag # found chain 1zwwA in template set Warning: unaligning (T0547)G74 (1zwwA)Q59 because D (zeta) conformation "forbidden" or filtered. T0547 69 :ARKEF 1zwwA 54 :TIEYL T0547 75 :YKG 1zwwA 60 :PNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28864 # 2bryA.69.40 read from T0547.t2k.many.frag # found chain 2bryA in training set T0547 69 :ARKEFGYKG 2bryA 33 :LCRALGVES Number of specific fragments extracted= 1 number of extra gaps= 0 total=28865 # 2absA.69.52 read from T0547.t2k.many.frag # found chain 2absA in training set Warning: unaligning (T0547)F73 (2absA)F37 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (2absA)R41 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKE 2absA 33 :FLDE T0547 74 :GYK 2absA 38 :FLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28867 # 1uarA.69.69 read from T0547.t2k.many.frag # found chain 1uarA in training set T0547 69 :ARKEFGYKG 1uarA 70 :LMERLGISN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28868 # 1wu7A.69.147 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 69 :ARKEFGYKG 1wu7A 148 :ILDRLGLQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28869 # 1gvnA.69.27 read from T0547.t2k.many.frag # found chain 1gvnA in template set Warning: unaligning (T0547)K76 (1gvnA)N35 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEFGY 1gvnA 28 :YVLNHEL T0547 77 :G 1gvnA 36 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=28871 # 1zc6A.69.62 read from T0547.t2k.many.frag # found chain 1zc6A in template set T0547 69 :ARKEFGYKG 1zc6A 63 :AFQQAGLPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28872 # 1k47A.69.77 read from T0547.t2k.many.frag # found chain 1k47A in template set T0547 69 :ARKEFGYKG 1k47A 76 :FLAVRGQNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28873 1dg9A expands to /projects/compbio/data/pdb/1dg9.pdb.gz 1dg9A:# 1dg9A.69.28 read from T0547.t2k.many.frag # adding 1dg9A to template set # found chain 1dg9A in template set T0547 69 :ARKEFGYKG 1dg9A 29 :LVTDQNISD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28874 1fjgI expands to /projects/compbio/data/pdb/1fjg.pdb.gz 1fjgI:# 1fjgI.69.48 read from T0547.t2k.many.frag # adding 1fjgI to template set # found chain 1fjgI in template set Warning: unaligning (T0547)G77 (1fjgI)G57 because H (helix) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 1fjgI 49 :PLRAVDAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28875 # 1b8oA.69.176 read from T0547.t2k.many.frag # found chain 1b8oA in training set Warning: unaligning (T0547)G77 (1b8oA)R185 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 1b8oA 177 :TWKQMGEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=28876 # 1ow1A.69.93 read from T0547.t2k.many.frag # found chain 1ow1A in training set T0547 69 :ARKEFGYKG 1ow1A 3563 :VARRMTVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=28877 # 1eu1A.69.99 read from T0547.t2k.many.frag # found chain 1eu1A in training set T0547 69 :ARKEFGYKG 1eu1A 100 :VQESYGPTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28878 # 1gudA.69.25 read from T0547.t2k.many.frag # found chain 1gudA in training set T0547 69 :ARKEFGYKG 1gudA 26 :EAKTLGVSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28879 # 1wlfA.69.77 read from T0547.t2k.many.frag # found chain 1wlfA in template set T0547 69 :ARKEFGYKG 1wlfA 80 :VGQKLGLSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28880 # 2aeuA.69.66 read from T0547.t2k.many.frag # found chain 2aeuA in training set T0547 69 :ARKEFGYKG 2aeuA 67 :GLKHLGGDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28881 # 1qlwA.69.140 read from T0547.t2k.many.frag # found chain 1qlwA in training set T0547 69 :ARKEFGYKG 1qlwA 141 :AWAIFRFGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28882 # 1gmxA.69.50 read from T0547.t2k.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)G77 (1gmxA)T59 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 1gmxA 51 :FMRDNDFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28883 # 1jr2A.69.66 read from T0547.t2k.many.frag # found chain 1jr2A in template set T0547 69 :ARKEFGYKG 1jr2A 46 :FSEKLSHPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28884 # 1iuqA.69.46 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 69 :ARKEFGYKG 1iuqA 48 :AVIESGNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28885 # 1ajsA.69.145 read from T0547.t2k.many.frag # found chain 1ajsA in training set T0547 69 :ARKEFGYKG 1ajsA 146 :VFTTAGFKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28886 # 1kpf.70.84 read from T0547.t2k.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)G78 (1kpf)G93 because S (epsilon) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1kpf 85 :AADLGLNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28887 # 1mg7A.70.101 read from T0547.t2k.many.frag # found chain 1mg7A in training set T0547 70 :RKEFGYKGG 1mg7A 108 :IDQLKLHNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28888 # 1koe.70.30 read from T0547.t2k.many.frag # found chain 1koe in training set T0547 70 :RKEFGYKGG 1koe 168 :ARAVGLSGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28889 # 1uc2A.70.218 read from T0547.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)K76 (1uc2A)F225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1uc2A)E226 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGY 1uc2A 219 :AKAYGL T0547 78 :G 1uc2A 227 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=28891 # 1dpgA.70.102 read from T0547.t2k.many.frag # found chain 1dpgA in template set T0547 70 :RKEFGYKGG 1dpgA 103 :ADKFDIDGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28892 # 1uekA.70.67 read from T0547.t2k.many.frag # found chain 1uekA in training set T0547 70 :RKEFGYKGG 1uekA 68 :LEAAGQPGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28893 # 1kqpA.70.6 read from T0547.t2k.many.frag # found chain 1kqpA in training set Warning: unaligning (T0547)G78 (1kqpA)S15 because E (beta_S) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1kqpA 7 :MRELHVKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=28894 # 2aeuA.70.67 read from T0547.t2k.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)K76 (2aeuA)D74 because E (beta_S) conformation "forbidden" or filtered. T0547 70 :RKEFGY 2aeuA 68 :LKHLGG T0547 77 :GG 2aeuA 75 :EN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28896 # 1fjgI.70.49 read from T0547.t2k.many.frag # found chain 1fjgI in template set T0547 70 :RKEFGYKGG 1fjgI 50 :LRAVDALGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28897 # 1wu7A.70.148 read from T0547.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)F73 (1wu7A)L152 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKE 1wu7A 149 :LDR T0547 74 :GYKGG 1wu7A 153 :GLQDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28899 # 1pmi.70.84 read from T0547.t2k.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)G78 (1pmi)E94 because Y (epsilon') conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1pmi 86 :ITKFGSSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28900 # 1ow1A.70.94 read from T0547.t2k.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)G78 (1ow1A)D3572 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1ow1A 3564 :ARRMTVET Number of specific fragments extracted= 1 number of extra gaps= 1 total=28901 # 1zwwA.70.54 read from T0547.t2k.many.frag # found chain 1zwwA in template set T0547 70 :RKEFGYKGG 1zwwA 55 :IEYLQPNPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28902 # 1uarA.70.70 read from T0547.t2k.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)G78 (1uarA)D79 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1uarA 71 :MERLGISN Number of specific fragments extracted= 1 number of extra gaps= 1 total=28903 # 1h6dA.70.125 read from T0547.t2k.many.frag # found chain 1h6dA in template set T0547 70 :RKEFGYKGG 1h6dA 126 :AAEYGVDPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28904 # 1jr2A.70.67 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G74 (1jr2A)S51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1jr2A)D55 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKEF 1jr2A 47 :SEKL T0547 75 :YKG 1jr2A 52 :HPE Number of specific fragments extracted= 2 number of extra gaps= 2 total=28906 # 2b0tA.70.67 read from T0547.t2k.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)G78 (2b0tA)A76 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 2b0tA 68 :GELAKTPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28907 # 1wlfA.70.78 read from T0547.t2k.many.frag # found chain 1wlfA in template set Warning: unaligning (T0547)G77 (1wlfA)S88 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYK 1wlfA 81 :GQKLGLS T0547 78 :G 1wlfA 89 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=28909 # 1dg9A.70.29 read from T0547.t2k.many.frag # found chain 1dg9A in template set T0547 70 :RKEFGYKGG 1dg9A 30 :VTDQNISDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28910 # 2absA.70.53 read from T0547.t2k.many.frag # found chain 2absA in training set T0547 70 :RKEFGYKGG 2absA 34 :LDEFFLKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28911 # 1eu1A.70.100 read from T0547.t2k.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)G78 (1eu1A)T109 because E (beta_S) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1eu1A 101 :QESYGPTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=28912 # 1k47A.70.78 read from T0547.t2k.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)G78 (1k47A)R85 because E (beta_S) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1k47A 77 :LAVRGQNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28913 # 1gvnA.70.28 read from T0547.t2k.many.frag # found chain 1gvnA in template set Warning: unaligning (T0547)K76 (1gvnA)N35 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGY 1gvnA 29 :VLNHEL T0547 77 :GG 1gvnA 36 :KN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28915 # 2bryA.70.41 read from T0547.t2k.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)G77 (2bryA)S41 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYK 2bryA 34 :CRALGVE T0547 78 :G 2bryA 42 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=28917 1vj7A expands to /projects/compbio/data/pdb/1vj7.pdb.gz 1vj7A:# 1vj7A.70.228 read from T0547.t2k.many.frag # adding 1vj7A to template set # found chain 1vj7A in template set Warning: unaligning (T0547)G78 (1vj7A)D237 because E (beta_S) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1vj7A 229 :TTEQGLFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=28918 # 1b8oA.70.177 read from T0547.t2k.many.frag # found chain 1b8oA in training set T0547 70 :RKEFGYKGG 1b8oA 178 :WKQMGEQRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28919 # 1y0yA.70.150 read from T0547.t2k.many.frag # found chain 1y0yA in training set Warning: unaligning (T0547)G77 (1y0yA)I158 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYK 1y0yA 151 :AEDMGVK T0547 78 :G 1y0yA 159 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=28921 # 1epuA.70.15 read from T0547.t2k.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)F73 (1epuA)V19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1epuA)N22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1epuA)A23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1epuA)E24 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKE 1epuA 16 :VLA T0547 74 :GY 1epuA 20 :KK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28923 # 2al2A.70.231 read from T0547.t2k.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 Warning: unaligning (T0547)K76 (2al2A)D238 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKE 2al2A 232 :IKA T0547 75 :Y 2al2A 237 :H T0547 77 :GG 2al2A 239 :GK Number of specific fragments extracted= 3 number of extra gaps= 2 total=28926 # 1gmxA.70.51 read from T0547.t2k.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)G78 (1gmxA)P60 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1gmxA 52 :MRDNDFDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=28927 # 1kpf.71.85 read from T0547.t2k.many.frag # found chain 1kpf in training set T0547 71 :KEFGYKGGF 1kpf 86 :ADLGLNKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28928 # 1uc2A.71.219 read from T0547.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)K76 (1uc2A)F225 because Y (epsilon') conformation "forbidden" or filtered. T0547 71 :KEFGY 1uc2A 220 :KAYGL T0547 77 :GGF 1uc2A 226 :EGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28930 # 1koe.71.31 read from T0547.t2k.many.frag # found chain 1koe in training set T0547 71 :KEFGYKGGF 1koe 169 :RAVGLSGTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28931 # 1mg7A.71.102 read from T0547.t2k.many.frag # found chain 1mg7A in training set Warning: unaligning (T0547)G77 (1mg7A)N115 because E (beta_S) conformation "forbidden" or filtered. T0547 71 :KEFGYK 1mg7A 109 :DQLKLH T0547 78 :GF 1mg7A 116 :VY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28933 # 1uekA.71.68 read from T0547.t2k.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)G78 (1uekA)G76 because P (beta_P) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1uekA 69 :EAAGQPG T0547 79 :F 1uekA 77 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=28935 # 1dpgA.71.103 read from T0547.t2k.many.frag # found chain 1dpgA in template set T0547 71 :KEFGYKGGF 1dpgA 104 :DKFDIDGNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28936 # 2aeuA.71.68 read from T0547.t2k.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)K76 (2aeuA)D74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (2aeuA)N76 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEFGY 2aeuA 69 :KHLGG T0547 77 :G 2aeuA 75 :E T0547 79 :F 2aeuA 77 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=28939 # 1wu7A.71.149 read from T0547.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G78 (1wu7A)I157 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1wu7A 150 :DRLGLQD T0547 79 :F 1wu7A 158 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=28941 # 1ow1A.71.95 read from T0547.t2k.many.frag # found chain 1ow1A in training set T0547 71 :KEFGYKGGF 1ow1A 3565 :RRMTVETDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28942 # 1fjgI.71.50 read from T0547.t2k.many.frag # found chain 1fjgI in template set T0547 71 :KEFGYKGGF 1fjgI 51 :RAVDALGRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28943 # 2b0tA.71.68 read from T0547.t2k.many.frag # found chain 2b0tA in training set T0547 71 :KEFGYKGGF 2b0tA 69 :ELAKTPEAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28944 # 1kqpA.71.7 read from T0547.t2k.many.frag # found chain 1kqpA in training set Warning: unaligning (T0547)G78 (1kqpA)S15 because E (beta_S) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1kqpA 8 :RELHVKP T0547 79 :F 1kqpA 16 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=28946 # 1uarA.71.71 read from T0547.t2k.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)G78 (1uarA)D79 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1uarA 72 :ERLGISN T0547 79 :F 1uarA 80 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=28948 # 1wlfA.71.79 read from T0547.t2k.many.frag # found chain 1wlfA in template set Warning: unaligning (T0547)G77 (1wlfA)S88 because P (beta_P) conformation "forbidden" or filtered. T0547 71 :KEFGYK 1wlfA 82 :QKLGLS T0547 78 :GF 1wlfA 89 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28950 # 1eu1A.71.101 read from T0547.t2k.many.frag # found chain 1eu1A in training set T0547 71 :KEFGYKGGF 1eu1A 102 :ESYGPTGTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28951 # 1h6dA.71.126 read from T0547.t2k.many.frag # found chain 1h6dA in template set Warning: unaligning (T0547)F73 (1h6dA)Y129 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KE 1h6dA 127 :AE T0547 74 :GYKGGF 1h6dA 130 :GVDPRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28953 # 1vj7A.71.229 read from T0547.t2k.many.frag # found chain 1vj7A in template set Warning: unaligning (T0547)G77 (1vj7A)G236 because Y (epsilon') conformation "forbidden" or filtered. T0547 71 :KEFGYK 1vj7A 230 :TEQGLF T0547 78 :GF 1vj7A 237 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28955 # 1pmi.71.85 read from T0547.t2k.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)F73 (1pmi)F89 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1pmi)K93 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1pmi)E94 because Y (epsilon') conformation "forbidden" or filtered. T0547 71 :KE 1pmi 87 :TK T0547 74 :GYK 1pmi 90 :GSS T0547 79 :F 1pmi 95 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=28958 # 1vd6A.71.86 read from T0547.t2k.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)G78 (1vd6A)Q94 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1vd6A 87 :ALKEAFP T0547 79 :F 1vd6A 95 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=28960 # 1w23A.71.58 read from T0547.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)G78 (1w23A)D66 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1w23A 59 :ELLQIPN T0547 79 :F 1w23A 67 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=28962 # 2al2A.71.232 read from T0547.t2k.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 Warning: unaligning (T0547)G78 (2al2A)K240 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KE 2al2A 233 :KA T0547 75 :YKG 2al2A 237 :HDG T0547 79 :F 2al2A 241 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=28965 # 1dg9A.71.30 read from T0547.t2k.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)G78 (1dg9A)N38 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1dg9A 31 :TDQNISD T0547 79 :F 1dg9A 39 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=28967 # 1jr2A.71.68 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G74 (1jr2A)S51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1jr2A)D55 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEF 1jr2A 48 :EKL T0547 75 :YKG 1jr2A 52 :HPE T0547 79 :F 1jr2A 56 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=28970 # 1y0yA.71.151 read from T0547.t2k.many.frag # found chain 1y0yA in training set T0547 71 :KEFGYKGGF 1y0yA 152 :EDMGVKIGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28971 # 1zwwA.71.55 read from T0547.t2k.many.frag # found chain 1zwwA in template set Warning: unaligning (T0547)G74 (1zwwA)Q59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1zwwA)N61 because P (beta_P) conformation "forbidden" or filtered. T0547 71 :KEF 1zwwA 56 :EYL T0547 75 :Y 1zwwA 60 :P T0547 77 :GGF 1zwwA 62 :PAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=28974 # 1qwnA.71.115 read from T0547.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G78 (1qwnA)E123 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1qwnA 116 :RHLHDNP T0547 79 :F 1qwnA 124 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=28976 # 1v54C.71.62 read from T0547.t2k.many.frag # found chain 1v54C in training set T0547 71 :KEFGYKGGF 1v54C 63 :RESTFQGHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28977 # 1mj5A.71.93 read from T0547.t2k.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G78 (1mj5A)R101 because D (zeta) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1mj5A 94 :EALDLGD T0547 79 :F 1mj5A 102 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=28979 # 1epuA.71.16 read from T0547.t2k.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)G77 (1epuA)A23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1epuA)E24 because P (beta_P) conformation "forbidden" or filtered. T0547 71 :KEFGYK 1epuA 17 :LAVKKN T0547 79 :F 1epuA 25 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=28981 # 1hdhA.71.192 read from T0547.t2k.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)G78 (1hdhA)P200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE in next template residue (1hdhA)F202 T0547 71 :KEFGYKG 1hdhA 193 :KERDQSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=28982 # 1kpf.72.86 read from T0547.t2k.many.frag # found chain 1kpf in training set T0547 72 :EFGYKGGFN 1kpf 87 :DLGLNKGYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28983 # 1uc2A.72.220 read from T0547.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)K76 (1uc2A)F225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1uc2A)E226 because P (beta_P) conformation "forbidden" or filtered. T0547 72 :EFGY 1uc2A 221 :AYGL T0547 78 :GFN 1uc2A 227 :GQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28985 # 1wu7A.72.150 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 72 :EFGYKGGFN 1wu7A 151 :RLGLQDIYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28986 # 1ow1A.72.96 read from T0547.t2k.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)G78 (1ow1A)D3572 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFGYKG 1ow1A 3566 :RMTVET T0547 79 :FN 1ow1A 3573 :YC Number of specific fragments extracted= 2 number of extra gaps= 1 total=28988 # 1koe.72.32 read from T0547.t2k.many.frag # found chain 1koe in training set Warning: unaligning (T0547)G77 (1koe)G175 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1koe)T176 because N (gamma') conformation "forbidden" or filtered. T0547 72 :EFGYK 1koe 170 :AVGLS T0547 79 :FN 1koe 177 :FR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28990 # 2b0tA.72.69 read from T0547.t2k.many.frag # found chain 2b0tA in training set T0547 72 :EFGYKGGFN 2b0tA 70 :LAKTPEANI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28991 # 1mg7A.72.103 read from T0547.t2k.many.frag # found chain 1mg7A in training set Warning: unaligning (T0547)K76 (1mg7A)H114 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1mg7A)E118 because E (beta_S) conformation "forbidden" or filtered. T0547 72 :EFGY 1mg7A 110 :QLKL T0547 77 :GGF 1mg7A 115 :NVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=28993 # 1dpgA.72.104 read from T0547.t2k.many.frag # found chain 1dpgA in template set T0547 72 :EFGYKGGFN 1dpgA 105 :KFDIDGNRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28994 # 1uekA.72.69 read from T0547.t2k.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)Y75 (1uekA)Q73 because L (left) conformation "forbidden" or filtered. T0547 72 :EFG 1uekA 70 :AAG T0547 76 :KGGFN 1uekA 74 :PGGVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28996 # 2aeuA.72.69 read from T0547.t2k.many.frag # found chain 2aeuA in training set T0547 72 :EFGYKGGFN 2aeuA 70 :HLGGDENDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28997 # 1fjgI.72.51 read from T0547.t2k.many.frag # found chain 1fjgI in template set T0547 72 :EFGYKGGFN 1fjgI 52 :AVDALGRFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28998 # 1uarA.72.72 read from T0547.t2k.many.frag # found chain 1uarA in training set T0547 72 :EFGYKGGFN 1uarA 73 :RLGISNDTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28999 # 1w23A.72.59 read from T0547.t2k.many.frag # found chain 1w23A in training set T0547 72 :EFGYKGGFN 1w23A 60 :LLQIPNDYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29000 # 1vd6A.72.87 read from T0547.t2k.many.frag # found chain 1vd6A in training set T0547 72 :EFGYKGGFN 1vd6A 88 :LKEAFPQAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29001 # 2al2A.72.233 read from T0547.t2k.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 T0547 72 :E 2al2A 234 :A T0547 75 :YKGGFN 2al2A 237 :HDGKVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29003 # 1vj7A.72.230 read from T0547.t2k.many.frag # found chain 1vj7A in template set Warning: unaligning (T0547)G78 (1vj7A)D237 because E (beta_S) conformation "forbidden" or filtered. T0547 72 :EFGYKG 1vj7A 231 :EQGLFG T0547 79 :FN 1vj7A 238 :VY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29005 # 1qwnA.72.116 read from T0547.t2k.many.frag # found chain 1qwnA in training set T0547 72 :EFGYKGGFN 1qwnA 117 :HLHDNPEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29006 # 1wlfA.72.80 read from T0547.t2k.many.frag # found chain 1wlfA in template set Warning: unaligning (T0547)K76 (1wlfA)S87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1wlfA)Q91 because P (beta_P) conformation "forbidden" or filtered. T0547 72 :EFGY 1wlfA 83 :KLGL T0547 77 :GGF 1wlfA 88 :SGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=29008 # 1hdhA.72.193 read from T0547.t2k.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)G74 (1hdhA)D196 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1hdhA)R199 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1hdhA)P200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE in next template residue (1hdhA)F202 Warning: unaligning (T0547)N80 because of BadResidue code BAD_PEPTIDE at template residue (1hdhA)F202 T0547 72 :EF 1hdhA 194 :ER T0547 75 :YK 1hdhA 197 :QS Number of specific fragments extracted= 2 number of extra gaps= 2 total=29010 # 1dg9A.72.31 read from T0547.t2k.many.frag # found chain 1dg9A in template set T0547 72 :EFGYKGGFN 1dg9A 32 :DQNISDNWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29011 # 1y0yA.72.152 read from T0547.t2k.many.frag # found chain 1y0yA in training set T0547 72 :EFGYKGGFN 1y0yA 153 :DMGVKIGTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29012 # 1eu1A.72.102 read from T0547.t2k.many.frag # found chain 1eu1A in training set T0547 72 :EFGYKGGFN 1eu1A 103 :SYGPTGTFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29013 # 1dqzA.72.54 read from T0547.t2k.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)G74 (1dqzA)Y59 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1dqzA)Q61 because L (left) conformation "forbidden" or filtered. T0547 72 :EF 1dqzA 57 :EE T0547 75 :Y 1dqzA 60 :Y T0547 77 :GGFN 1dqzA 62 :SGLS Number of specific fragments extracted= 3 number of extra gaps= 2 total=29016 # 1mj5A.72.94 read from T0547.t2k.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G77 (1mj5A)D100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1mj5A)R101 because D (zeta) conformation "forbidden" or filtered. T0547 72 :EFGYK 1mj5A 95 :ALDLG T0547 79 :FN 1mj5A 102 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29018 # 2absA.72.55 read from T0547.t2k.many.frag # found chain 2absA in training set Warning: unaligning (T0547)K76 (2absA)K40 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (2absA)R41 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (2absA)A44 because E (beta_S) conformation "forbidden" or filtered. T0547 72 :EFGY 2absA 36 :EFFL T0547 78 :GF 2absA 42 :GD Number of specific fragments extracted= 2 number of extra gaps= 2 total=29020 # 1bu8A.72.62 read from T0547.t2k.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)G78 (1bu8A)D67 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFGYKG 1bu8A 61 :FSNFQL T0547 79 :FN 1bu8A 68 :RK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29022 # 1t0tV.72.49 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)G78 (1t0tV)G56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1t0tV)H58 because Y (epsilon') conformation "forbidden" or filtered. T0547 72 :EFGYKG 1t0tV 50 :TESEKQ T0547 79 :F 1t0tV 57 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=29024 # 1jr2A.72.69 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G78 (1jr2A)D55 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFGYKG 1jr2A 49 :KLSHPE T0547 79 :FN 1jr2A 56 :YG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29026 # 1kveB.72.33 read from T0547.t2k.many.frag # found chain 1kveB in training set Warning: unaligning (T0547)N80 (1kveB)G187 because Y (epsilon') conformation "forbidden" or filtered. T0547 72 :EFGYKGGF 1kveB 179 :KNGFKGHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=29027 # 1h6dA.72.127 read from T0547.t2k.many.frag # found chain 1h6dA in template set Warning: unaligning (T0547)K76 (1h6dA)D132 because P (beta_P) conformation "forbidden" or filtered. T0547 72 :EFGY 1h6dA 128 :EYGV T0547 77 :GGFN 1h6dA 133 :PRKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29029 # 1ow1A.73.97 read from T0547.t2k.many.frag # found chain 1ow1A in training set T0547 73 :FGYKGGFNA 1ow1A 3567 :MTVETDYCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29030 # 1kpf.73.87 read from T0547.t2k.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)G78 (1kpf)G93 because S (epsilon) conformation "forbidden" or filtered. T0547 73 :FGYKG 1kpf 88 :LGLNK T0547 79 :FNA 1kpf 94 :YRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=29032 # 1vd6A.73.88 read from T0547.t2k.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)K76 (1vd6A)F92 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1vd6A)Q94 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FGY 1vd6A 89 :KEA T0547 77 :G 1vd6A 93 :P T0547 79 :FNA 1vd6A 95 :AVF Number of specific fragments extracted= 3 number of extra gaps= 2 total=29035 # 1wu7A.73.151 read from T0547.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)F73 (1wu7A)L152 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKGGFNA 1wu7A 153 :GLQDIYEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29036 # 1w23A.73.60 read from T0547.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)F73 (1w23A)L61 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKGGFNA 1w23A 62 :QIPNDYQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29037 # 1uc2A.73.221 read from T0547.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)K76 (1uc2A)F225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1uc2A)V229 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :FGY 1uc2A 222 :YGL T0547 77 :GGF 1uc2A 226 :EGQ T0547 81 :A 1uc2A 230 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=29040 # 1dpgA.73.105 read from T0547.t2k.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)G77 (1dpgA)G110 because S (epsilon) conformation "forbidden" or filtered. T0547 73 :FGYK 1dpgA 106 :FDID T0547 78 :GFNA 1dpgA 111 :NRIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29042 # 1uekA.73.70 read from T0547.t2k.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)Y75 (1uekA)Q73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1uekA)R78 because E (beta_S) conformation "forbidden" or filtered. T0547 73 :FG 1uekA 71 :AG T0547 76 :KGGF 1uekA 74 :PGGV T0547 81 :A 1uekA 79 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=29045 # 1koe.73.33 read from T0547.t2k.many.frag # found chain 1koe in training set Warning: unaligning (T0547)F73 (1koe)V171 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1koe)T176 because N (gamma') conformation "forbidden" or filtered. T0547 74 :GYKG 1koe 172 :GLSG T0547 79 :FNA 1koe 177 :FRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=29047 # 2b0tA.73.70 read from T0547.t2k.many.frag # found chain 2b0tA in training set T0547 73 :FGYKGGFNA 2b0tA 71 :AKTPEANII Number of specific fragments extracted= 1 number of extra gaps= 0 total=29048 # 1uarA.73.73 read from T0547.t2k.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)A81 (1uarA)V82 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :FGYKGGFN 1uarA 74 :LGISNDTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=29049 # 1fjgI.73.52 read from T0547.t2k.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)K76 (1fjgI)L56 because T (delta_L) conformation "forbidden" or filtered. T0547 73 :FGY 1fjgI 53 :VDA T0547 77 :GGFNA 1fjgI 57 :GRFDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29051 # 2aeuA.73.70 read from T0547.t2k.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)G78 (2aeuA)N76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (2aeuA)K78 because E (beta_S) conformation "forbidden" or filtered. T0547 73 :FGYKG 2aeuA 71 :LGGDE T0547 79 :F 2aeuA 77 :D T0547 81 :A 2aeuA 79 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=29054 # 1hdhA.73.194 read from T0547.t2k.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)G74 (1hdhA)D196 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE in next template residue (1hdhA)F202 Warning: unaligning (T0547)N80 because of BadResidue code BAD_PEPTIDE at template residue (1hdhA)F202 T0547 73 :F 1hdhA 195 :R T0547 75 :YKGG 1hdhA 197 :QSRP T0547 81 :A 1hdhA 203 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=29057 # 1qwnA.73.117 read from T0547.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G78 (1qwnA)E123 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FGYKG 1qwnA 118 :LHDNP T0547 79 :FNA 1qwnA 124 :MKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29059 # 1dqzA.73.55 read from T0547.t2k.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)G74 (1dqzA)Y59 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1dqzA)Q61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1dqzA)S62 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1dqzA)S65 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :F 1dqzA 58 :E T0547 75 :Y 1dqzA 60 :Y T0547 78 :GF 1dqzA 63 :GL T0547 81 :A 1dqzA 66 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=29063 # 1bu8A.73.63 read from T0547.t2k.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)N80 (1bu8A)K69 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :FGYKGGF 1bu8A 62 :SNFQLDR T0547 81 :A 1bu8A 70 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=29065 # 2al2A.73.234 read from T0547.t2k.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 Warning: unaligning (T0547)G78 (2al2A)K240 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (2al2A)I243 because E (beta_S) conformation "forbidden" or filtered. T0547 75 :YKG 2al2A 237 :HDG T0547 79 :FN 2al2A 241 :VK Number of specific fragments extracted= 2 number of extra gaps= 3 total=29067 # 1mg7A.73.104 read from T0547.t2k.many.frag # found chain 1mg7A in training set T0547 73 :FGYKGGFNA 1mg7A 111 :LKLHNVYEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29068 # 2btoA.73.130 read from T0547.t2k.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)A81 (2btoA)V139 because E (beta_S) conformation "forbidden" or filtered. T0547 73 :FGYKGGFN 2btoA 131 :CDNVGGII Number of specific fragments extracted= 1 number of extra gaps= 1 total=29069 # 1vj7A.73.231 read from T0547.t2k.many.frag # found chain 1vj7A in template set Warning: unaligning (T0547)N80 (1vj7A)Y239 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1vj7A)G240 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :FGYKGGF 1vj7A 232 :QGLFGDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29070 # 1t0tV.73.50 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)G77 (1t0tV)Q55 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FGYK 1t0tV 51 :ESEK T0547 78 :GFNA 1t0tV 56 :GSHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29072 # 1dg9A.73.32 read from T0547.t2k.many.frag # found chain 1dg9A in template set T0547 73 :FGYKGGFNA 1dg9A 33 :QNISDNWVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29073 2d1pB expands to /projects/compbio/data/pdb/2d1p.pdb.gz 2d1pB:# 2d1pB.73.28 read from T0547.t2k.many.frag # adding 2d1pB to template set # found chain 2d1pB in template set Warning: unaligning (T0547)G77 (2d1pB)D33 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FGYK 2d1pB 29 :SALT T0547 78 :GFNA 2d1pB 34 :DLAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29075 # 1hd2A.73.26 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)N80 (1hd2A)G34 because Y (epsilon') conformation "forbidden" or filtered. T0547 73 :FGYKGGF 1hd2A 27 :ELFKGKK T0547 81 :A 1hd2A 35 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=29077 # 1wlfA.73.81 read from T0547.t2k.many.frag # found chain 1wlfA in template set T0547 73 :FGYKGGFNA 1wlfA 84 :LGLSSGDQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29078 # 1vefA.73.97 read from T0547.t2k.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)G74 (1vefA)I99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1vefA)P101 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :F 1vefA 98 :A T0547 75 :Y 1vefA 100 :L T0547 77 :GGFNA 1vefA 102 :PELNR Number of specific fragments extracted= 3 number of extra gaps= 2 total=29081 # 1y0yA.73.153 read from T0547.t2k.many.frag # found chain 1y0yA in training set Warning: unaligning (T0547)K76 (1y0yA)K157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1y0yA)I158 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :FGY 1y0yA 154 :MGV T0547 78 :GFNA 1y0yA 159 :GTVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29083 1xeaA expands to /projects/compbio/data/pdb/1xea.pdb.gz 1xeaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xeaA.73.21 read from T0547.t2k.many.frag # adding 1xeaA to template set # found chain 1xeaA in template set T0547 73 :FGYKGGFNA 1xeaA 22 :LAQWPDIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29084 # 1kveB.73.34 read from T0547.t2k.many.frag # found chain 1kveB in training set Warning: unaligning (T0547)G78 (1kveB)H185 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1kveB)G187 because Y (epsilon') conformation "forbidden" or filtered. T0547 73 :FGYKG 1kveB 180 :NGFKG T0547 79 :F 1kveB 186 :Q T0547 81 :A 1kveB 188 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=29087 # 1vd6A.74.89 read from T0547.t2k.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)K76 (1vd6A)F92 because D (zeta) conformation "forbidden" or filtered. T0547 74 :GY 1vd6A 90 :EA T0547 77 :GGFNAV 1vd6A 93 :PQAVFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29089 # 1ow1A.74.98 read from T0547.t2k.many.frag # found chain 1ow1A in training set T0547 74 :GYKGGFNAV 1ow1A 3568 :TVETDYCLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29090 # 1w23A.74.61 read from T0547.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)G78 (1w23A)D66 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKG 1w23A 62 :QIPN T0547 79 :FNAV 1w23A 67 :YQIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29092 # 1kpf.74.88 read from T0547.t2k.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)G77 (1kpf)K92 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYK 1kpf 89 :GLN T0547 78 :GFNAV 1kpf 93 :GYRMV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29094 # 1wu7A.74.152 read from T0547.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G78 (1wu7A)I157 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKG 1wu7A 153 :GLQD T0547 79 :FNAV 1wu7A 158 :YEIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29096 # 1hdhA.74.195 read from T0547.t2k.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)G77 (1hdhA)R199 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1hdhA)P200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE in next template residue (1hdhA)F202 Warning: unaligning (T0547)N80 because of BadResidue code BAD_PEPTIDE at template residue (1hdhA)F202 T0547 74 :GYK 1hdhA 196 :DQS T0547 81 :AV 1hdhA 203 :AY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29098 # 1dpgA.74.106 read from T0547.t2k.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)G77 (1dpgA)G110 because S (epsilon) conformation "forbidden" or filtered. T0547 74 :GYK 1dpgA 107 :DID T0547 78 :GFNAV 1dpgA 111 :NRIFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29100 # 1uc2A.74.222 read from T0547.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)G77 (1uc2A)E226 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1uc2A)V230 because E (beta_S) conformation "forbidden" or filtered. T0547 74 :GYK 1uc2A 223 :GLF T0547 78 :GFN 1uc2A 227 :GQV T0547 82 :V 1uc2A 231 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=29103 # 1uarA.74.74 read from T0547.t2k.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)K76 (1uarA)S77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1uarA)D79 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GY 1uarA 75 :GI T0547 77 :G 1uarA 78 :N T0547 79 :FNAV 1uarA 80 :TTVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=29106 # 1fjgI.74.53 read from T0547.t2k.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)K76 (1fjgI)L56 because T (delta_L) conformation "forbidden" or filtered. T0547 74 :GY 1fjgI 54 :DA T0547 77 :GGFNAV 1fjgI 57 :GRFDAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29108 # 1dqzA.74.56 read from T0547.t2k.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)K76 (1dqzA)Q61 because L (left) conformation "forbidden" or filtered. T0547 74 :GY 1dqzA 59 :YY T0547 77 :GGFNAV 1dqzA 62 :SGLSVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29110 # 1hd2A.74.27 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)K76 (1hd2A)K30 because P (beta_P) conformation "forbidden" or filtered. T0547 74 :GY 1hd2A 28 :LF T0547 77 :GGFNAV 1hd2A 31 :GKKGVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29112 # 1vefA.74.98 read from T0547.t2k.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)G74 (1vefA)I99 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKGGFNAV 1vefA 100 :LPPELNRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29113 1xccA expands to /projects/compbio/data/pdb/1xcc.pdb.gz 1xccA:# 1xccA.74.27 read from T0547.t2k.many.frag # adding 1xccA to template set # found chain 1xccA in template set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)W33 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)W33 Warning: unaligning (T0547)N80 (1xccA)A34 because E (beta_S) conformation "forbidden" or filtered. T0547 74 :GYKG 1xccA 28 :YIEN T0547 81 :AV 1xccA 35 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29115 # 2btoA.74.131 read from T0547.t2k.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)K76 (2btoA)V134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (2btoA)G136 because Y (epsilon') conformation "forbidden" or filtered. T0547 74 :GY 2btoA 132 :DN T0547 77 :G 2btoA 135 :G T0547 79 :FNAV 2btoA 137 :IIVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29118 # 1qwnA.74.118 read from T0547.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)K76 (1qwnA)N121 because D (zeta) conformation "forbidden" or filtered. T0547 74 :GY 1qwnA 119 :HD T0547 77 :GGFNAV 1qwnA 122 :PEMKFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29120 # 1koe.74.34 read from T0547.t2k.many.frag # found chain 1koe in training set Warning: unaligning (T0547)G77 (1koe)G175 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1koe)T176 because N (gamma') conformation "forbidden" or filtered. T0547 74 :GYK 1koe 172 :GLS T0547 79 :FNAV 1koe 177 :FRAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29122 # 1bu8A.74.64 read from T0547.t2k.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)G78 (1bu8A)D67 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKG 1bu8A 63 :NFQL T0547 79 :FNAV 1bu8A 68 :RKTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29124 # 2b0tA.74.71 read from T0547.t2k.many.frag # found chain 2b0tA in training set T0547 74 :GYKGGFNAV 2b0tA 72 :KTPEANIIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29125 # 2aeuA.74.71 read from T0547.t2k.many.frag # found chain 2aeuA in training set T0547 74 :GYKGGFNAV 2aeuA 72 :GGDENDKCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29126 1o0sA expands to /projects/compbio/data/pdb/1o0s.pdb.gz 1o0sA:# 1o0sA.74.260 read from T0547.t2k.many.frag # adding 1o0sA to template set # found chain 1o0sA in template set Warning: unaligning (T0547)Y75 (1o0sA)Y262 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1o0sA)L267 because P (beta_P) conformation "forbidden" or filtered. T0547 74 :G 1o0sA 261 :K T0547 76 :KGGF 1o0sA 263 :GQKT T0547 81 :AV 1o0sA 268 :IQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=29129 # 1uekA.74.71 read from T0547.t2k.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)G78 (1uekA)G76 because P (beta_P) conformation "forbidden" or filtered. T0547 74 :GYKG 1uekA 72 :GQPG T0547 79 :FNAV 1uekA 77 :VRIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29131 # 2a2cA.74.235 read from T0547.t2k.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)G74 (2a2cA)K216 because P (beta_P) conformation "forbidden" or filtered. T0547 75 :YKGGFNAV 2a2cA 217 :LPSGAVFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29132 1pjr expands to /projects/compbio/data/pdb/1pjr.pdb.gz 1pjr:Warning: there is no chain 1pjr will retry with 1pjrA # 1pjr.74.20 read from T0547.t2k.many.frag # adding 1pjr to template set # found chain 1pjr in template set Warning: unaligning (T0547)A81 (1pjr)L28 because E (beta_S) conformation "forbidden" or filtered. T0547 74 :GYKGGFN 1pjr 21 :RTTEGPL T0547 82 :V 1pjr 29 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=29134 2a5yB expands to /projects/compbio/data/pdb/2a5y.pdb.gz 2a5yB:# 2a5yB.74.148 read from T0547.t2k.many.frag # adding 2a5yB to template set # found chain 2a5yB in template set Warning: unaligning (T0547)G74 (2a5yB)D149 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKGGFNAV 2a5yB 150 :LDSFFLFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29135 # 1gmxA.74.55 read from T0547.t2k.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)G77 (1gmxA)T59 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V82 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gmxA)Y66 T0547 74 :GYK 1gmxA 56 :DFD T0547 78 :GFNA 1gmxA 60 :PVMV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29137 # 1ryoA.74.28 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 74 :GYKGGFNAV 1ryoA 29 :VIPSDGPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29138 # 1t0tV.74.51 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)G77 (1t0tV)Q55 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1t0tV)H58 because Y (epsilon') conformation "forbidden" or filtered. T0547 74 :GYK 1t0tV 52 :SEK T0547 78 :GF 1t0tV 56 :GS T0547 81 :AV 1t0tV 59 :AV Number of specific fragments extracted= 3 number of extra gaps= 2 total=29141 # 1xeaA.74.22 read from T0547.t2k.many.frag # found chain 1xeaA in template set Warning: unaligning (T0547)K76 (1xeaA)W25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1xeaA)E29 because P (beta_P) conformation "forbidden" or filtered. T0547 74 :GY 1xeaA 23 :AQ T0547 77 :GGF 1xeaA 26 :PDI T0547 81 :AV 1xeaA 30 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=29144 # 1jr2A.74.71 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G74 (1jr2A)S51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1jr2A)G58 because Y (epsilon') conformation "forbidden" or filtered. T0547 75 :YKGGFN 1jr2A 52 :HPEDYG T0547 82 :V 1jr2A 59 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=29146 # 1vd6A.75.90 read from T0547.t2k.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)K76 (1vd6A)F92 because D (zeta) conformation "forbidden" or filtered. T0547 75 :Y 1vd6A 91 :A T0547 77 :GGFNAVY 1vd6A 93 :PQAVFNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29148 # 1w23A.75.62 read from T0547.t2k.many.frag # found chain 1w23A in training set T0547 75 :YKGGFNAVY 1w23A 63 :IPNDYQILF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29149 # 1hd2A.75.28 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)K76 (1hd2A)K30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1hd2A)G34 because Y (epsilon') conformation "forbidden" or filtered. T0547 75 :Y 1hd2A 29 :F T0547 77 :GGF 1hd2A 31 :GKK T0547 81 :AVY 1hd2A 35 :VLF Number of specific fragments extracted= 3 number of extra gaps= 2 total=29152 # 1xccA.75.28 read from T0547.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)W33 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)W33 T0547 75 :YKG 1xccA 29 :IEN T0547 80 :NAVY 1xccA 34 :AILF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29154 # 1vefA.75.99 read from T0547.t2k.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)K76 (1vefA)P101 because P (beta_P) conformation "forbidden" or filtered. T0547 75 :Y 1vefA 100 :L T0547 77 :GGFNAVY 1vefA 102 :PELNRVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29156 # 1uarA.75.75 read from T0547.t2k.many.frag # found chain 1uarA in training set T0547 75 :YKGGFNAVY 1uarA 76 :ISNDTTVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29157 # 1ow1A.75.99 read from T0547.t2k.many.frag # found chain 1ow1A in training set T0547 75 :YKGGFNAVY 1ow1A 3569 :VETDYCLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29158 # 1dqzA.75.57 read from T0547.t2k.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)K76 (1dqzA)Q61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1dqzA)S65 because P (beta_P) conformation "forbidden" or filtered. T0547 75 :Y 1dqzA 60 :Y T0547 77 :GGF 1dqzA 62 :SGL T0547 81 :AVY 1dqzA 66 :VIM Number of specific fragments extracted= 3 number of extra gaps= 2 total=29161 # 1dpgA.75.107 read from T0547.t2k.many.frag # found chain 1dpgA in template set T0547 75 :YKGGFNAVY 1dpgA 108 :IDGNRIFYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29162 1bjt expands to /projects/compbio/data/pdb/1bjt.pdb.gz 1bjt:Warning: there is no chain 1bjt will retry with 1bjtA # 1bjt.75.55 read from T0547.t2k.many.frag # adding 1bjt to template set # found chain 1bjt in template set Warning: unaligning (T0547)F79 (1bjt)Y468 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKGG 1bjt 464 :VGRD T0547 80 :NAVY 1bjt 469 :YGCY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29164 # 1qwnA.75.119 read from T0547.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)K76 (1qwnA)N121 because D (zeta) conformation "forbidden" or filtered. T0547 75 :Y 1qwnA 120 :D T0547 77 :GGFNAVY 1qwnA 122 :PEMKFIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=29166 # 1ryoA.75.29 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 75 :YKGGFNAVY 1ryoA 30 :IPSDGPSVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29167 # 1bu8A.75.65 read from T0547.t2k.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)K76 (1bu8A)Q65 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1bu8A)D67 because G (3-10) conformation "forbidden" or filtered. T0547 75 :Y 1bu8A 64 :F T0547 77 :G 1bu8A 66 :L T0547 79 :FNAVY 1bu8A 68 :RKTRF Number of specific fragments extracted= 3 number of extra gaps= 2 total=29170 # 1pjr.75.21 read from T0547.t2k.many.frag # found chain 1pjr in template set T0547 75 :YKGGFNAVY 1pjr 22 :TTEGPLLIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29171 # 2a2cA.75.236 read from T0547.t2k.many.frag # found chain 2a2cA in training set T0547 75 :YKGGFNAVY 2a2cA 217 :LPSGAVFVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29172 # 2aebA.75.88 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)G78 (2aebA)R92 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. T0547 75 :YKG 2aebA 89 :KNG T0547 79 :FN 2aebA 93 :IS T0547 82 :VY 2aebA 96 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29175 # 1zz1A.75.125 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)A81 (1zz1A)A132 because Y (epsilon') conformation "forbidden" or filtered. T0547 75 :YKGGFN 1zz1A 126 :ATGELS T0547 82 :VY 1zz1A 133 :GY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29177 # 1uc2A.75.223 read from T0547.t2k.many.frag # found chain 1uc2A in template set T0547 75 :YKGGFNAVY 1uc2A 224 :LFEGQVVVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29178 # 1kpf.75.89 read from T0547.t2k.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)G77 (1kpf)K92 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YK 1kpf 90 :LN T0547 78 :GFNAVY 1kpf 93 :GYRMVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29180 # 2btoA.75.132 read from T0547.t2k.many.frag # found chain 2btoA in template set T0547 75 :YKGGFNAVY 2btoA 133 :NVGGIIVLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29181 # 1o0sA.75.261 read from T0547.t2k.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)K76 (1o0sA)G263 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1o0sA)K265 because G (3-10) conformation "forbidden" or filtered. T0547 75 :Y 1o0sA 262 :Y T0547 77 :G 1o0sA 264 :Q T0547 79 :FNAVY 1o0sA 266 :TLIQF Number of specific fragments extracted= 3 number of extra gaps= 2 total=29184 # 1hdhA.75.196 read from T0547.t2k.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)G77 (1hdhA)R199 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE in next template residue (1hdhA)F202 Warning: unaligning (T0547)N80 because of BadResidue code BAD_PEPTIDE at template residue (1hdhA)F202 T0547 75 :YK 1hdhA 197 :QS T0547 78 :G 1hdhA 200 :P T0547 81 :AVY 1hdhA 203 :AYL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29187 # 1fjgI.75.54 read from T0547.t2k.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)G77 (1fjgI)G57 because H (helix) conformation "forbidden" or filtered. T0547 75 :YK 1fjgI 55 :AL T0547 78 :GFNAVY 1fjgI 58 :RFDAYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29189 1vchA expands to /projects/compbio/data/pdb/1vch.pdb.gz 1vchA:# 1vchA.75.48 read from T0547.t2k.many.frag # adding 1vchA to template set # found chain 1vchA in template set T0547 75 :YKGGFNAVY 1vchA 49 :VPKEAEILF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29190 # 1s95A.75.64 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)G78 (1s95A)T234 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKG 1s95A 231 :LKE T0547 79 :FNAVY 1s95A 235 :EKITV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29192 # 2a5yB.75.149 read from T0547.t2k.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)G78 (2a5yB)F153 because Y (epsilon') conformation "forbidden" or filtered. T0547 75 :YKG 2a5yB 150 :LDS T0547 79 :FNAVY 2a5yB 154 :FLFLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=29194 # 2b8mA.75.88 read from T0547.t2k.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)G77 (2b8mA)S90 because E (beta_S) conformation "forbidden" or filtered. T0547 75 :YK 2b8mA 88 :IN T0547 78 :GFNAVY 2b8mA 91 :DILEFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29196 # 1n55A.75.33 read from T0547.t2k.many.frag # found chain 1n55A in training set Warning: unaligning (T0547)G77 (1n55A)H35 because Y (epsilon') conformation "forbidden" or filtered. T0547 75 :YK 1n55A 33 :IS T0547 78 :GFNAVY 1n55A 36 :DVQCVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29198 1wdaA expands to /projects/compbio/data/pdb/1wda.pdb.gz 1wdaA:# 1wdaA.75.307 read from T0547.t2k.many.frag # adding 1wdaA to template set # found chain 1wdaA in template set Warning: unaligning (T0547)G78 (1wdaA)P304 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1wdaA)Q306 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKG 1wdaA 301 :NTQ T0547 79 :F 1wdaA 305 :P T0547 81 :AVY 1wdaA 307 :EVY Number of specific fragments extracted= 3 number of extra gaps= 2 total=29201 # 2fn0A.75.189 read from T0547.t2k.many.frag # found chain 2fn0A in template set T0547 75 :YKGGFNAVY 2fn0A 187 :RRGEYVKVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29202 # 1hd2A.76.29 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)N80 (1hd2A)G34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1hd2A)G38 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGF 1hd2A 30 :KGKK T0547 81 :AVY 1hd2A 35 :VLF Number of specific fragments extracted= 2 number of extra gaps= 2 total=29204 # 1vefA.76.100 read from T0547.t2k.many.frag # found chain 1vefA in training set T0547 76 :KGGFNAVYP 1vefA 101 :PPELNRVFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29205 # 1vd6A.76.91 read from T0547.t2k.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)K76 (1vd6A)F92 because D (zeta) conformation "forbidden" or filtered. T0547 77 :GGFNAVYP 1vd6A 93 :PQAVFNVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29206 # 1bjt.76.56 read from T0547.t2k.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)G77 (1bjt)R466 because G (3-10) conformation "forbidden" or filtered. T0547 76 :K 1bjt 465 :G T0547 78 :GFNAVYP 1bjt 467 :DYYGCYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29208 # 1s95A.76.65 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 1s95A 232 :KETEKITV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29209 # 1w23A.76.63 read from T0547.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)A81 (1w23A)I69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1w23A)L72 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFN 1w23A 64 :PNDYQ T0547 82 :VY 1w23A 70 :LF Number of specific fragments extracted= 2 number of extra gaps= 2 total=29211 # 1bu8A.76.66 read from T0547.t2k.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)G78 (1bu8A)D67 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1bu8A)I73 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KG 1bu8A 65 :QL T0547 79 :FNAVY 1bu8A 68 :RKTRF Number of specific fragments extracted= 2 number of extra gaps= 2 total=29213 # 1qwnA.76.120 read from T0547.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G78 (1qwnA)E123 because G (3-10) conformation "forbidden" or filtered. T0547 76 :KG 1qwnA 121 :NP T0547 79 :FNAVYP 1qwnA 124 :MKFIWA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29215 # 1dqzA.76.58 read from T0547.t2k.many.frag # found chain 1dqzA in training set T0547 76 :KGGFNAVYP 1dqzA 61 :QSGLSVIMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29216 # 1vchA.76.49 read from T0547.t2k.many.frag # found chain 1vchA in template set Warning: unaligning (T0547)P84 (1vchA)T58 because Y (epsilon') conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 1vchA 50 :PKEAEILF Number of specific fragments extracted= 1 number of extra gaps= 1 total=29217 # 1uarA.76.76 read from T0547.t2k.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)P84 (1uarA)Y85 because Y (epsilon') conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 1uarA 77 :SNDTTVVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29218 # 1ryoA.76.30 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 1ryoA 31 :PSDGPSVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29219 # 2aebA.76.89 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)A81 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 T0547 76 :KGGFN 2aebA 90 :NGRIS T0547 82 :VY 2aebA 96 :VL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29221 # 1dpgA.76.108 read from T0547.t2k.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)K76 (1dpgA)D109 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1dpgA)S117 because D (zeta) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1dpgA 110 :GNRIFYM Number of specific fragments extracted= 1 number of extra gaps= 2 total=29222 # 1zz1A.76.126 read from T0547.t2k.many.frag # found chain 1zz1A in training set T0547 76 :KGGFNAVYP 1zz1A 127 :TGELSAGYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29223 # 1xccA.76.29 read from T0547.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)W33 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)W33 Warning: unaligning (T0547)P84 (1xccA)S38 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KG 1xccA 30 :EN T0547 80 :NAVY 1xccA 34 :AILF Number of specific fragments extracted= 2 number of extra gaps= 2 total=29225 # 7odcA.76.58 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G78 (7odcA)R61 because G (3-10) conformation "forbidden" or filtered. T0547 76 :KG 7odcA 59 :LP T0547 79 :FNAVYP 7odcA 62 :VTPFYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29227 # 1pjr.76.22 read from T0547.t2k.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)G78 (1pjr)G25 because S (epsilon) conformation "forbidden" or filtered. T0547 76 :KG 1pjr 23 :TE T0547 79 :FNAVYP 1pjr 26 :PLLIMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29229 # 1ow1A.76.100 read from T0547.t2k.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)N80 (1ow1A)C3574 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGF 1ow1A 3570 :ETDY T0547 81 :AVYP 1ow1A 3575 :LLLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29231 # 2a2cA.76.237 read from T0547.t2k.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K76 (2a2cA)P218 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (2a2cA)G220 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (2a2cA)A226 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :G 2a2cA 219 :S T0547 79 :FNAVY 2a2cA 221 :AVFVI Number of specific fragments extracted= 2 number of extra gaps= 3 total=29233 # 1wdaA.76.308 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G77 (1wdaA)Q303 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1wdaA)P304 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1wdaA)Q306 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :K 1wdaA 302 :T T0547 79 :F 1wdaA 305 :P T0547 81 :AVY 1wdaA 307 :EVY Number of specific fragments extracted= 3 number of extra gaps= 3 total=29236 # 2b8eA.76.130 read from T0547.t2k.many.frag # found chain 2b8eA in template set Warning: unaligning (T0547)K76 (2b8eA)N537 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (2b8eA)R539 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (2b8eA)G542 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (2b8eA)A545 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :G 2b8eA 538 :G T0547 79 :FN 2b8eA 540 :VE T0547 82 :VY 2b8eA 543 :II Number of specific fragments extracted= 3 number of extra gaps= 4 total=29239 # 1n55A.76.34 read from T0547.t2k.many.frag # found chain 1n55A in training set Warning: unaligning (T0547)G77 (1n55A)H35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1n55A)A42 because D (zeta) conformation "forbidden" or filtered. T0547 76 :K 1n55A 34 :S T0547 78 :GFNAVY 1n55A 36 :DVQCVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=29241 1ogdA expands to /projects/compbio/data/pdb/1ogd.pdb.gz 1ogdA:# 1ogdA.76.18 read from T0547.t2k.many.frag # adding 1ogdA to template set # found chain 1ogdA in template set Warning: unaligning (T0547)P84 (1ogdA)A27 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 1ogdA 19 :GHTDKIVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29242 # 1fjgI.76.55 read from T0547.t2k.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)G77 (1fjgI)G57 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1fjgI)T64 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :K 1fjgI 56 :L T0547 78 :GFNAVY 1fjgI 58 :RFDAYI Number of specific fragments extracted= 2 number of extra gaps= 2 total=29244 # 2fn0A.76.190 read from T0547.t2k.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)P84 (2fn0A)V196 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 2fn0A 188 :RGEYVKVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29245 # 1o08A.76.104 read from T0547.t2k.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)G77 (1o08A)N1106 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 76 :K 1o08A 1105 :S T0547 78 :GFNAVY 1o08A 1107 :KIKIAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29247 2f2hA expands to /projects/compbio/data/pdb/2f2h.pdb.gz 2f2hA:# 2f2hA.76.232 read from T0547.t2k.many.frag # adding 2f2hA to template set # found chain 2f2hA in template set Warning: unaligning (T0547)G77 (2f2hA)S234 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (2f2hA)E235 because G (3-10) conformation "forbidden" or filtered. T0547 76 :K 2f2hA 233 :E T0547 79 :FNAVYP 2f2hA 236 :YLEYFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29249 # 1ox0A.76.200 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)A81 (1ox0A)L187 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 76 :KGGFN 1ox0A 182 :FQDVM T0547 82 :VY 1ox0A 188 :VG Number of specific fragments extracted= 2 number of extra gaps= 2 total=29251 # 2b8mA.76.89 read from T0547.t2k.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)G77 (2b8mA)S90 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (2b8mA)V97 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :K 2b8mA 89 :N T0547 78 :GFNAVY 2b8mA 91 :DILEFF Number of specific fragments extracted= 2 number of extra gaps= 2 total=29253 # 1vefA.77.101 read from T0547.t2k.many.frag # found chain 1vefA in training set T0547 77 :GGFNAVYPL 1vefA 102 :PELNRVFPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29254 # 7odcA.77.59 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 77 :GGFNAVYPL 7odcA 60 :PRVTPFYAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29255 # 1hd2A.77.30 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)N80 (1hd2A)G34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1hd2A)G38 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGF 1hd2A 31 :GKK T0547 81 :AVY 1hd2A 35 :VLF T0547 85 :L 1hd2A 39 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=29258 # 1bjt.77.57 read from T0547.t2k.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)F79 (1bjt)Y468 because G (3-10) conformation "forbidden" or filtered. T0547 77 :GG 1bjt 466 :RD T0547 80 :NAVYPL 1bjt 469 :YGCYPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29260 # 1s95A.77.66 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1s95A 233 :ETEKITV T0547 85 :L 1s95A 241 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=29262 # 1vd6A.77.92 read from T0547.t2k.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)G78 (1vd6A)Q94 because G (3-10) conformation "forbidden" or filtered. T0547 77 :G 1vd6A 93 :P T0547 79 :FNAVYPL 1vd6A 95 :AVFNVEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29264 # 1zz1A.77.127 read from T0547.t2k.many.frag # found chain 1zz1A in training set T0547 77 :GGFNAVYPL 1zz1A 128 :GELSAGYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29265 # 1vchA.77.50 read from T0547.t2k.many.frag # found chain 1vchA in template set Warning: unaligning (T0547)P84 (1vchA)T58 because Y (epsilon') conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1vchA 51 :KEAEILF T0547 85 :L 1vchA 59 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=29267 # 1bu8A.77.67 read from T0547.t2k.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)P84 (1bu8A)I73 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1bu8A 66 :LDRKTRF T0547 85 :L 1bu8A 74 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=29269 # 1wdaA.77.309 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G77 (1wdaA)Q303 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1wdaA)E307 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFN 1wdaA 304 :PPQ T0547 82 :VY 1wdaA 308 :VY T0547 85 :L 1wdaA 311 :C Number of specific fragments extracted= 3 number of extra gaps= 3 total=29272 # 1qwnA.77.121 read from T0547.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G78 (1qwnA)E123 because G (3-10) conformation "forbidden" or filtered. T0547 77 :G 1qwnA 122 :P T0547 79 :FNAVYPL 1qwnA 124 :MKFIWAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29274 # 1knwA.77.44 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A81 (1knwA)V49 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFN 1knwA 45 :QFDV T0547 82 :VYPL 1knwA 50 :RFAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=29276 # 2aebA.77.90 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)A81 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G99 T0547 77 :GGFN 2aebA 91 :GRIS T0547 82 :VY 2aebA 96 :VL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29278 # 1o08A.77.105 read from T0547.t2k.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)G77 (1o08A)N1106 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1o08A 1107 :KIKIAL T0547 85 :L 1o08A 1114 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=29280 # 1uarA.77.77 read from T0547.t2k.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)G78 (1uarA)D79 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1uarA)Y85 because Y (epsilon') conformation "forbidden" or filtered. T0547 77 :G 1uarA 78 :N T0547 79 :FNAVY 1uarA 80 :TTVVL T0547 85 :L 1uarA 86 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=29283 1jftA expands to /projects/compbio/data/pdb/1jft.pdb.gz 1jftA:# 1jftA.77.112 read from T0547.t2k.many.frag # adding 1jftA to template set # found chain 1jftA in template set Warning: unaligning (T0547)G77 (1jftA)K114 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1jftA)V121 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1jftA 115 :RVDGLL T0547 85 :L 1jftA 122 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=29285 # 2fqxA.77.60 read from T0547.t2k.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 2fqxA 76 :ENMGLVV T0547 85 :L 2fqxA 84 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=29287 # 2f2hA.77.233 read from T0547.t2k.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)G77 (2f2hA)S234 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (2f2hA)E235 because G (3-10) conformation "forbidden" or filtered. T0547 79 :FNAVYPL 2f2hA 236 :YLEYFVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29288 # 1n55A.77.35 read from T0547.t2k.many.frag # found chain 1n55A in training set Warning: unaligning (T0547)G77 (1n55A)H35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1n55A)D36 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1n55A)A42 because D (zeta) conformation "forbidden" or filtered. T0547 79 :FNAVY 1n55A 37 :VQCVV T0547 85 :L 1n55A 43 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=29290 # 1ryoA.77.31 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1ryoA 32 :SDGPSVA T0547 85 :L 1ryoA 40 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=29292 # 1dqzA.77.59 read from T0547.t2k.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)G77 (1dqzA)S62 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1dqzA)S65 because P (beta_P) conformation "forbidden" or filtered. T0547 78 :GF 1dqzA 63 :GL T0547 81 :AVYPL 1dqzA 66 :VIMPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=29294 # 1dpgA.77.109 read from T0547.t2k.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)N80 (1dpgA)I113 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1dpgA)S117 because D (zeta) conformation "forbidden" or filtered. T0547 77 :GGF 1dpgA 110 :GNR T0547 81 :AVY 1dpgA 114 :FYM T0547 85 :L 1dpgA 118 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=29297 1zbsA expands to /projects/compbio/data/pdb/1zbs.pdb.gz 1zbsA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zbsA.77.57 read from T0547.t2k.many.frag # adding 1zbsA to template set # found chain 1zbsA in template set Warning: unaligning (T0547)A81 (1zbsA)A62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1zbsA)F65 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFN 1zbsA 58 :SSIR T0547 82 :VY 1zbsA 63 :VY T0547 85 :L 1zbsA 66 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=29300 # 2b8mA.77.90 read from T0547.t2k.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)P84 (2b8mA)V97 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 2b8mA 90 :SDILEFF T0547 85 :L 2b8mA 98 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=29302 # 1w23A.77.64 read from T0547.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)P84 (1w23A)L72 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1w23A 65 :NDYQILF T0547 85 :L 1w23A 73 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=29304 # 1ow1A.77.101 read from T0547.t2k.many.frag # found chain 1ow1A in training set T0547 77 :GGFNAVYPL 1ow1A 3571 :TDYCLLLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29305 # 1fjgI.77.56 read from T0547.t2k.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)P84 (1fjgI)T64 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1fjgI 57 :GRFDAYI T0547 85 :L 1fjgI 65 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=29307 # 2a2cA.77.238 read from T0547.t2k.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)A81 (2a2cA)F223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (2a2cA)A226 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFN 2a2cA 219 :SGAV T0547 82 :VY 2a2cA 224 :VI T0547 85 :L 2a2cA 227 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=29310 # 1pjr.77.23 read from T0547.t2k.many.frag # found chain 1pjr in template set T0547 77 :GGFNAVYPL 1pjr 24 :EGPLLIMAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29311 # 1xccA.77.30 read from T0547.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)W33 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)W33 Warning: unaligning (T0547)P84 (1xccA)S38 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :G 1xccA 31 :N T0547 80 :NAVY 1xccA 34 :AILF T0547 85 :L 1xccA 39 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=29314 # 7odcA.78.60 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 78 :GFNAVYPLK 7odcA 61 :RVTPFYAVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29315 # 1hd2A.78.31 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)N80 (1hd2A)G34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1hd2A)G38 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GF 1hd2A 32 :KK T0547 81 :AVY 1hd2A 35 :VLF T0547 85 :LK 1hd2A 39 :VP Number of specific fragments extracted= 3 number of extra gaps= 2 total=29318 # 1vefA.78.102 read from T0547.t2k.many.frag # found chain 1vefA in training set T0547 78 :GFNAVYPLK 1vefA 103 :ELNRVFPVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29319 # 1bjt.78.58 read from T0547.t2k.many.frag # found chain 1bjt in template set T0547 78 :GFNAVYPLK 1bjt 467 :DYYGCYPLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29320 # 1knwA.78.45 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 78 :GFNAVYPLK 1knwA 46 :FDVVRFAQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29321 # 1wdaA.78.310 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G78 (1wdaA)P304 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1wdaA)E307 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wdaA)I313 T0547 79 :FN 1wdaA 305 :PQ T0547 82 :VY 1wdaA 308 :VY T0547 85 :L 1wdaA 311 :C Number of specific fragments extracted= 3 number of extra gaps= 4 total=29324 # 1s95A.78.67 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)G78 (1s95A)T234 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1s95A)K236 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :F 1s95A 235 :E T0547 81 :AVY 1s95A 237 :ITV T0547 85 :LK 1s95A 241 :GD Number of specific fragments extracted= 3 number of extra gaps= 3 total=29327 # 1vd6A.78.93 read from T0547.t2k.many.frag # found chain 1vd6A in training set T0547 78 :GFNAVYPLK 1vd6A 94 :QAVFNVELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29328 # 1zz1A.78.128 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)V82 (1zz1A)G133 because Y (epsilon') conformation "forbidden" or filtered. T0547 78 :GFNA 1zz1A 129 :ELSA T0547 83 :YPLK 1zz1A 134 :YALV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29330 # 2f2hA.78.234 read from T0547.t2k.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)G78 (2f2hA)E235 because G (3-10) conformation "forbidden" or filtered. T0547 79 :FNAVYPLK 2f2hA 236 :YLEYFVID Number of specific fragments extracted= 1 number of extra gaps= 1 total=29331 # 1qwnA.78.122 read from T0547.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G78 (1qwnA)E123 because G (3-10) conformation "forbidden" or filtered. T0547 79 :FNAVYPLK 1qwnA 124 :MKFIWAEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29332 # 2aebA.78.91 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G99 Warning: unaligning (T0547)K86 (2aebA)D100 because P (beta_P) conformation "forbidden" or filtered. T0547 78 :GFNAVY 2aebA 92 :RISLVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29333 # 1o08A.78.106 read from T0547.t2k.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1o08A 1107 :KIKIAL T0547 85 :LK 1o08A 1114 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29335 # 2b8mA.78.91 read from T0547.t2k.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)P84 (2b8mA)V97 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFNAVY 2b8mA 91 :DILEFF T0547 85 :LK 2b8mA 98 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29337 # 1vchA.78.51 read from T0547.t2k.many.frag # found chain 1vchA in template set Warning: unaligning (T0547)P84 (1vchA)T58 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE in next template residue (1vchA)T61 T0547 78 :GFNAVY 1vchA 52 :EAEILF T0547 85 :L 1vchA 59 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=29339 # 1bu8A.78.68 read from T0547.t2k.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)G78 (1bu8A)D67 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1bu8A)I73 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1bu8A)H75 because P (beta_P) conformation "forbidden" or filtered. T0547 79 :FNAVY 1bu8A 68 :RKTRF T0547 85 :L 1bu8A 74 :V Number of specific fragments extracted= 2 number of extra gaps= 3 total=29341 # 1dpgA.78.110 read from T0547.t2k.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)P84 (1dpgA)S117 because D (zeta) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1dpgA 111 :NRIFYM T0547 85 :LK 1dpgA 118 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29343 # 2fqxA.78.61 read from T0547.t2k.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFNAVY 2fqxA 77 :NMGLVV T0547 85 :LK 2fqxA 84 :CG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29345 # 1ne9A.78.66 read from T0547.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)P84 (1ne9A)A73 because D (zeta) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1ne9A 67 :DKKFAY T0547 85 :LK 1ne9A 74 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29347 # 1xccA.78.31 read from T0547.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)W33 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)W33 Warning: unaligning (T0547)P84 (1xccA)S38 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVY 1xccA 34 :AILF T0547 85 :LK 1xccA 39 :HP Number of specific fragments extracted= 2 number of extra gaps= 2 total=29349 # 1ow1A.78.102 read from T0547.t2k.many.frag # found chain 1ow1A in training set T0547 78 :GFNAVYPLK 1ow1A 3572 :DYCLLLALP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29350 # 1rcqA.78.24 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 T0547 80 :NAVYPLK 1rcqA 27 :RALAVIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29351 # 1jftA.78.113 read from T0547.t2k.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)A81 (1jftA)G118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1jftA)V121 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFN 1jftA 115 :RVD T0547 82 :VY 1jftA 119 :LL T0547 85 :LK 1jftA 122 :MC Number of specific fragments extracted= 3 number of extra gaps= 2 total=29354 # 2btoA.78.135 read from T0547.t2k.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)Y83 (2btoA)H141 because Y (epsilon') conformation "forbidden" or filtered. T0547 78 :GFNAV 2btoA 136 :GIIVL T0547 84 :PLK 2btoA 142 :AIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29356 # 1ox0A.78.202 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 78 :GFNAVY 1ox0A 184 :DVMLVG T0547 85 :LK 1ox0A 191 :TE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29358 # 2a5yB.78.152 read from T0547.t2k.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)P84 (2a5yB)G159 because Y (epsilon') conformation "forbidden" or filtered. T0547 78 :GFNAVY 2a5yB 153 :FFLFLH T0547 85 :LK 2a5yB 160 :RA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29360 # 1dqzA.78.60 read from T0547.t2k.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)K86 (1dqzA)G71 because S (epsilon) conformation "forbidden" or filtered. T0547 78 :GFNAVYPL 1dqzA 63 :GLSVIMPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29361 # 1ryoA.78.32 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1ryoA 33 :DGPSVA T0547 85 :LK 1ryoA 40 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29363 # 1pjr.78.24 read from T0547.t2k.many.frag # found chain 1pjr in template set T0547 78 :GFNAVYPLK 1pjr 25 :GPLLIMAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29364 # 1fcdA.78.146 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)N80 (1fcdA)T149 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1fcdA)A153 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE in next template residue (1fcdA)P155 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (1fcdA)P155 T0547 78 :GF 1fcdA 147 :GG T0547 81 :AVY 1fcdA 150 :VVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=29366 # 7odcA.79.61 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 79 :FNAVYPLKV 7odcA 62 :VTPFYAVKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=29367 # 1knwA.79.46 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 79 :FNAVYPLKV 1knwA 47 :DVVRFAQKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29368 # 1hd2A.79.32 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)P84 (1hd2A)G38 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FNAVY 1hd2A 33 :KGVLF T0547 85 :LKV 1hd2A 39 :VPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29370 # 1wdaA.79.311 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wdaA)I313 Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)I313 T0547 79 :FNAVY 1wdaA 305 :PQEVY T0547 85 :L 1wdaA 311 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=29372 # 1bjt.79.59 read from T0547.t2k.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)K86 (1bjt)R475 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FNAVYPL 1bjt 468 :YYGCYPL T0547 87 :V 1bjt 476 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=29374 # 1vefA.79.103 read from T0547.t2k.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)N80 (1vefA)N105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1vefA)V110 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :F 1vefA 104 :L T0547 81 :AVYP 1vefA 106 :RVFP T0547 86 :KV 1vefA 111 :NS Number of specific fragments extracted= 3 number of extra gaps= 2 total=29377 # 1vd6A.79.94 read from T0547.t2k.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)A81 (1vd6A)F97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1vd6A)F104 T0547 79 :FN 1vd6A 95 :AV T0547 82 :VYPLK 1vd6A 98 :NVELK Number of specific fragments extracted= 2 number of extra gaps= 2 total=29379 # 1s95A.79.68 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)A81 (1s95A)I237 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FN 1s95A 235 :EK T0547 82 :VY 1s95A 238 :TV T0547 85 :LKV 1s95A 241 :GDT Number of specific fragments extracted= 3 number of extra gaps= 2 total=29382 # 2f2hA.79.235 read from T0547.t2k.many.frag # found chain 2f2hA in template set T0547 79 :FNAVYPLKV 2f2hA 236 :YLEYFVIDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29383 # 2aebA.79.92 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)A81 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G99 T0547 79 :FN 2aebA 93 :IS T0547 82 :VY 2aebA 96 :VL T0547 86 :KV 2aebA 100 :DH Number of specific fragments extracted= 3 number of extra gaps= 2 total=29386 # 1qwnA.79.123 read from T0547.t2k.many.frag # found chain 1qwnA in training set T0547 79 :FNAVYPLKV 1qwnA 124 :MKFIWAEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29387 # 1zz1A.79.129 read from T0547.t2k.many.frag # found chain 1zz1A in training set T0547 79 :FNAVYPLKV 1zz1A 130 :LSAGYALVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29388 # 2b8mA.79.92 read from T0547.t2k.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)A81 (2b8mA)E94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (2b8mA)V97 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FN 2b8mA 92 :IL T0547 82 :VY 2b8mA 95 :FF T0547 85 :LKV 2b8mA 98 :VKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=29391 # 1dpgA.79.111 read from T0547.t2k.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)P84 (1dpgA)S117 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1dpgA)A119 because P (beta_P) conformation "forbidden" or filtered. T0547 79 :FNAVY 1dpgA 112 :RIFYM T0547 85 :L 1dpgA 118 :V T0547 87 :V 1dpgA 120 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=29394 # 1o08A.79.107 read from T0547.t2k.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)N80 (1o08A)K1109 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 79 :F 1o08A 1108 :I T0547 81 :AVY 1o08A 1110 :IAL T0547 85 :LKV 1o08A 1114 :SAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=29397 # 1xccA.79.32 read from T0547.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)W33 Warning: unaligning (T0547)P84 (1xccA)S38 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVY 1xccA 34 :AILF T0547 85 :LKV 1xccA 39 :HPN Number of specific fragments extracted= 2 number of extra gaps= 2 total=29399 # 1ox0A.79.203 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)N80 (1ox0A)M186 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1ox0A)L187 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :F 1ox0A 185 :V T0547 82 :VY 1ox0A 188 :VG T0547 85 :LKV 1ox0A 191 :TEA Number of specific fragments extracted= 3 number of extra gaps= 2 total=29402 # 1v5vA.79.149 read from T0547.t2k.many.frag # found chain 1v5vA in training set Warning: unaligning (T0547)A81 (1v5vA)A152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1v5vA)A155 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1v5vA)G158 because S (epsilon) conformation "forbidden" or filtered. T0547 79 :FN 1v5vA 150 :DI T0547 82 :VY 1v5vA 153 :MF T0547 85 :LK 1v5vA 156 :VQ Number of specific fragments extracted= 3 number of extra gaps= 3 total=29405 # 2fqxA.79.62 read from T0547.t2k.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)A81 (2fqxA)L80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FN 2fqxA 78 :MG T0547 82 :VY 2fqxA 81 :VV T0547 85 :LKV 2fqxA 84 :CGS Number of specific fragments extracted= 3 number of extra gaps= 2 total=29408 # 1ne9A.79.67 read from T0547.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)P84 (1ne9A)A73 because D (zeta) conformation "forbidden" or filtered. T0547 79 :FNAVY 1ne9A 68 :KKFAY T0547 85 :LKV 1ne9A 74 :SKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29410 # 1pjr.79.25 read from T0547.t2k.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)A81 (1pjr)L28 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FN 1pjr 26 :PL T0547 82 :VYPLKV 1pjr 29 :IMAGAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29412 # 2a5yB.79.153 read from T0547.t2k.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)P84 (2a5yB)G159 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :FNAVY 2a5yB 154 :FLFLH T0547 85 :LKV 2a5yB 160 :RAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29414 # 2btoA.79.136 read from T0547.t2k.many.frag # found chain 2btoA in template set T0547 79 :FNAVYPLKV 2btoA 137 :IIVLHAIGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29415 1q9jA expands to /projects/compbio/data/pdb/1q9j.pdb.gz 1q9jA:# 1q9jA.79.116 read from T0547.t2k.many.frag # adding 1q9jA to template set # found chain 1q9jA in template set Warning: unaligning (T0547)N80 (1q9jA)L118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1q9jA)L122 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :F 1q9jA 117 :E T0547 81 :AVY 1q9jA 119 :TLY T0547 85 :LKV 1q9jA 123 :HHC Number of specific fragments extracted= 3 number of extra gaps= 2 total=29418 1r9jA expands to /projects/compbio/data/pdb/1r9j.pdb.gz 1r9jA:# 1r9jA.79.149 read from T0547.t2k.many.frag # adding 1r9jA to template set # found chain 1r9jA in template set Warning: unaligning (T0547)N80 (1r9jA)T149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1r9jA)C153 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :F 1r9jA 148 :Y T0547 81 :AVY 1r9jA 150 :YVY T0547 85 :LKV 1r9jA 154 :GDG Number of specific fragments extracted= 3 number of extra gaps= 2 total=29421 # 1jftA.79.114 read from T0547.t2k.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)A81 (1jftA)G118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1jftA)V121 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FN 1jftA 116 :VD T0547 82 :VY 1jftA 119 :LL T0547 85 :LKV 1jftA 122 :MCS Number of specific fragments extracted= 3 number of extra gaps= 2 total=29424 # 1ow1A.79.103 read from T0547.t2k.many.frag # found chain 1ow1A in training set T0547 79 :FNAVYPLKV 1ow1A 3573 :YCLLLALPC Number of specific fragments extracted= 1 number of extra gaps= 0 total=29425 # 1vk1A.79.193 read from T0547.t2k.many.frag # found chain 1vk1A in training set Warning: unaligning (T0547)P84 (1vk1A)I199 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk1A)A202 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk1A)A202 T0547 79 :FNAVY 1vk1A 194 :IDYVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=29426 # 1ryoA.79.33 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FNAVY 1ryoA 34 :GPSVA T0547 85 :LKV 1ryoA 40 :VKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29428 # 1zbsA.79.59 read from T0547.t2k.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)P84 (1zbsA)F65 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1zbsA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :FNAVY 1zbsA 60 :IRAVY T0547 85 :L 1zbsA 66 :Y T0547 87 :V 1zbsA 68 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=29431 # 7odcA.80.62 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 80 :NAVYPLKVN 7odcA 63 :TPFYAVKCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29432 # 1knwA.80.47 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 80 :NAVYPLKVN 1knwA 48 :VVRFAQKAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=29433 # 1hd2A.80.33 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)P84 (1hd2A)G38 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVY 1hd2A 34 :GVLF T0547 85 :LKVN 1hd2A 39 :VPGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29435 # 1wdaA.80.312 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wdaA)I313 Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)I313 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)F314 T0547 80 :NAVY 1wdaA 306 :QEVY T0547 85 :L 1wdaA 311 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=29437 # 1s95A.80.69 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)A81 (1s95A)I237 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :N 1s95A 236 :K T0547 82 :VY 1s95A 238 :TV T0547 85 :LKVN 1s95A 241 :GDTH Number of specific fragments extracted= 3 number of extra gaps= 2 total=29440 # 1bjt.80.60 read from T0547.t2k.many.frag # found chain 1bjt in template set T0547 80 :NAVYPLKVN 1bjt 469 :YGCYPLRGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29441 # 1vd6A.80.95 read from T0547.t2k.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1vd6A)F104 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)F104 T0547 80 :NAVYPLK 1vd6A 96 :VFNVELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29442 # 2f2hA.80.236 read from T0547.t2k.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N80 (2f2hA)L237 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (2f2hA)E238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 82 :VYPLKV 2f2hA 239 :YFVIDG Number of specific fragments extracted= 1 number of extra gaps= 2 total=29443 # 2aebA.80.93 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)A81 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G99 T0547 80 :N 2aebA 94 :S T0547 82 :VY 2aebA 96 :VL T0547 86 :KVN 2aebA 100 :DHS Number of specific fragments extracted= 3 number of extra gaps= 2 total=29446 # 1v5vA.80.150 read from T0547.t2k.many.frag # found chain 1v5vA in training set Warning: unaligning (T0547)P84 (1v5vA)A155 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1v5vA)G158 because S (epsilon) conformation "forbidden" or filtered. T0547 80 :NAVY 1v5vA 151 :IAMF T0547 85 :LK 1v5vA 156 :VQ T0547 88 :N 1v5vA 159 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=29449 # 1ox0A.80.204 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1ox0A)E192 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVY 1ox0A 186 :MLVG T0547 85 :L 1ox0A 191 :T T0547 87 :VN 1ox0A 193 :AS Number of specific fragments extracted= 3 number of extra gaps= 2 total=29452 # 1r9jA.80.150 read from T0547.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)P84 (1r9jA)C153 because Y (epsilon') conformation "forbidden" or filtered. T0547 80 :NAVY 1r9jA 149 :TYVY T0547 85 :LKVN 1r9jA 154 :GDGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=29454 # 1qwnA.80.124 read from T0547.t2k.many.frag # found chain 1qwnA in training set T0547 80 :NAVYPLKVN 1qwnA 125 :KFIWAEISY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29455 # 1vefA.80.104 read from T0547.t2k.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)N80 (1vefA)N105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1vefA)V110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1vefA)N111 because G (3-10) conformation "forbidden" or filtered. T0547 81 :AVYP 1vefA 106 :RVFP T0547 87 :VN 1vefA 112 :SG Number of specific fragments extracted= 2 number of extra gaps= 2 total=29457 # 2b8mA.80.93 read from T0547.t2k.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)P84 (2b8mA)V97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (2b8mA)P101 because C (cis) conformation "forbidden" or filtered. T0547 80 :NAVY 2b8mA 93 :LEFF T0547 85 :LKV 2b8mA 98 :VKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=29459 # 2fqxA.80.63 read from T0547.t2k.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVY 2fqxA 79 :GLVV T0547 85 :LKVN 2fqxA 84 :CGSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29461 # 1o08A.80.108 read from T0547.t2k.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 80 :NAVY 1o08A 1109 :KIAL T0547 85 :LKVN 1o08A 1114 :SASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29463 # 1xccA.80.33 read from T0547.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)P84 (1xccA)S38 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVY 1xccA 34 :AILF T0547 85 :LKVN 1xccA 39 :HPND Number of specific fragments extracted= 2 number of extra gaps= 1 total=29465 # 1q9jA.80.117 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)N80 (1q9jA)L118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1q9jA)L122 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 1q9jA 119 :TLY T0547 85 :LKVN 1q9jA 123 :HHCM Number of specific fragments extracted= 2 number of extra gaps= 2 total=29467 # 1zz1A.80.130 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)N88 (1zz1A)P139 because C (cis) conformation "forbidden" or filtered. T0547 80 :NAVYPLKV 1zz1A 131 :SAGYALVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=29468 # 1ne9A.80.68 read from T0547.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)P84 (1ne9A)A73 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1ne9A)K75 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1ne9A)P77 because C (cis) conformation "forbidden" or filtered. T0547 80 :NAVY 1ne9A 69 :KFAY T0547 85 :L 1ne9A 74 :S T0547 87 :V 1ne9A 76 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=29471 # 1pjr.80.26 read from T0547.t2k.many.frag # found chain 1pjr in template set T0547 80 :NAVYPLKVN 1pjr 27 :LLIMAGAGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29472 # 1vchA.80.53 read from T0547.t2k.many.frag # found chain 1vchA in template set Warning: unaligning (T0547)P84 (1vchA)T58 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE in next template residue (1vchA)T61 Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE at template residue (1vchA)T61 T0547 80 :NAVY 1vchA 54 :EILF T0547 85 :L 1vchA 59 :T T0547 88 :N 1vchA 62 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=29475 # 1dpgA.80.112 read from T0547.t2k.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)P84 (1dpgA)S117 because D (zeta) conformation "forbidden" or filtered. T0547 80 :NAVY 1dpgA 113 :IFYM T0547 85 :LKVN 1dpgA 118 :VAPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29477 # 1ryoA.80.34 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)N80 (1ryoA)P35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1ryoA)K41 because P (beta_P) conformation "forbidden" or filtered. T0547 81 :AVY 1ryoA 36 :SVA T0547 85 :L 1ryoA 40 :V T0547 87 :VN 1ryoA 42 :KA Number of specific fragments extracted= 3 number of extra gaps= 3 total=29480 # 1vk1A.80.194 read from T0547.t2k.many.frag # found chain 1vk1A in training set Warning: unaligning (T0547)A81 (1vk1A)Y196 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1vk1A)I199 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk1A)A202 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk1A)A202 T0547 80 :N 1vk1A 195 :D T0547 82 :VY 1vk1A 197 :VF T0547 88 :N 1vk1A 203 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=29483 # 2btoA.80.137 read from T0547.t2k.many.frag # found chain 2btoA in template set T0547 80 :NAVYPLKVN 2btoA 138 :IVLHAIGGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29484 1yzxA expands to /projects/compbio/data/pdb/1yzx.pdb.gz 1yzxA:Skipped atom 1532, because occupancy 0.500 <= existing 0.500 in 1yzxA Skipped atom 1534, because occupancy 0.500 <= existing 0.500 in 1yzxA Skipped atom 1536, because occupancy 0.500 <= existing 0.500 in 1yzxA Skipped atom 1538, because occupancy 0.500 <= existing 0.500 in 1yzxA Skipped atom 1540, because occupancy 0.500 <= existing 0.500 in 1yzxA Skipped atom 1542, because occupancy 0.500 <= existing 0.500 in 1yzxA Skipped atom 1544, because occupancy 0.500 <= existing 0.500 in 1yzxA Skipped atom 1546, because occupancy 0.500 <= existing 0.500 in 1yzxA # 1yzxA.80.8 read from T0547.t2k.many.frag # adding 1yzxA to template set # found chain 1yzxA in template set Warning: unaligning (T0547)P84 (1yzxA)D13 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVY 1yzxA 9 :ELFY T0547 85 :LKVN 1yzxA 14 :VLSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29486 # 1zbsA.80.60 read from T0547.t2k.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)A81 (1zbsA)A62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1zbsA)F65 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1zbsA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1zbsA)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 80 :N 1zbsA 61 :R T0547 82 :VY 1zbsA 63 :VY T0547 85 :L 1zbsA 66 :Y T0547 87 :V 1zbsA 68 :A Number of specific fragments extracted= 4 number of extra gaps= 4 total=29490 1tz9A expands to /projects/compbio/data/pdb/1tz9.pdb.gz 1tz9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1tz9A.80.110 read from T0547.t2k.many.frag # adding 1tz9A to template set # found chain 1tz9A in template set Warning: unaligning (T0547)P84 (1tz9A)S105 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVY 1tz9A 101 :LVCY T0547 85 :LKVN 1tz9A 106 :FKPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29492 # 7odcA.81.63 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 81 :AVYPLKVNQ 7odcA 64 :PFYAVKCND Number of specific fragments extracted= 1 number of extra gaps= 0 total=29493 # 1knwA.81.48 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A81 (1knwA)V49 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VYPLKVNQ 1knwA 50 :RFAQKACS Number of specific fragments extracted= 1 number of extra gaps= 1 total=29494 # 2f2hA.81.237 read from T0547.t2k.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)K86 (2f2hA)D243 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 81 :AVYPL 2f2hA 238 :EYFVI T0547 87 :V 2f2hA 244 :G T0547 89 :Q 2f2hA 246 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=29497 # 1hd2A.81.34 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)P84 (1hd2A)G38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1hd2A)F43 because T (delta_L) conformation "forbidden" or filtered. T0547 81 :AVY 1hd2A 35 :VLF T0547 85 :LKVN 1hd2A 39 :VPGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=29499 # 1v5vA.81.151 read from T0547.t2k.many.frag # found chain 1v5vA in training set Warning: unaligning (T0547)A81 (1v5vA)A152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1v5vA)A155 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1v5vA 153 :MF T0547 85 :LKVNQ 1v5vA 156 :VQGPK Number of specific fragments extracted= 2 number of extra gaps= 2 total=29501 # 1s95A.81.70 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1s95A)H244 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1s95A)G245 because L (left) conformation "forbidden" or filtered. T0547 81 :AVY 1s95A 237 :ITV T0547 85 :LKV 1s95A 241 :GDT Number of specific fragments extracted= 2 number of extra gaps= 2 total=29503 # 1ox0A.81.205 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVY 1ox0A 187 :LVG T0547 85 :LKVNQ 1ox0A 191 :TEASI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29505 # 1wdaA.81.313 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)A81 (1wdaA)E307 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1wdaA)C311 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wdaA)I313 Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)I313 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)F314 T0547 82 :VY 1wdaA 308 :VY T0547 89 :Q 1wdaA 315 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=29507 # 1r9jA.81.151 read from T0547.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)P84 (1r9jA)C153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1r9jA)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVY 1r9jA 150 :YVY T0547 86 :KVNQ 1r9jA 155 :DGCL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29509 # 1bjt.81.61 read from T0547.t2k.many.frag # found chain 1bjt in template set T0547 81 :AVYPLKVNQ 1bjt 470 :GCYPLRGKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29510 # 1q9jA.81.118 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)P84 (1q9jA)L122 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 1q9jA 119 :TLY T0547 85 :LKVNQ 1q9jA 123 :HHCMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29512 # 1ryoA.81.35 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVY 1ryoA 36 :SVA T0547 85 :LKVN 1ryoA 40 :VKKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=29514 # 2b8mA.81.94 read from T0547.t2k.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)P84 (2b8mA)V97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (2b8mA)P101 because C (cis) conformation "forbidden" or filtered. T0547 81 :AVY 2b8mA 94 :EFF T0547 85 :LKV 2b8mA 98 :VKA T0547 89 :Q 2b8mA 102 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=29517 # 2fqxA.81.64 read from T0547.t2k.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (2fqxA)G85 because S (epsilon) conformation "forbidden" or filtered. T0547 81 :AVY 2fqxA 80 :LVV T0547 85 :L 2fqxA 84 :C T0547 87 :VNQ 2fqxA 86 :SFL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29520 1z9hA expands to /projects/compbio/data/pdb/1z9h.pdb.gz 1z9hA:# 1z9hA.81.15 read from T0547.t2k.many.frag # adding 1z9hA to template set # found chain 1z9hA in template set Warning: unaligning (T0547)P84 (1z9hA)Q106 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVY 1z9hA 103 :TLY T0547 85 :LKVNQ 1z9hA 107 :YKTCP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29522 # 1vk1A.81.195 read from T0547.t2k.many.frag # found chain 1vk1A in training set Warning: unaligning (T0547)P84 (1vk1A)I199 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk1A)A202 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk1A)A202 T0547 81 :AVY 1vk1A 196 :YVF T0547 88 :NQ 1vk1A 203 :PT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29524 # 1vd6A.81.96 read from T0547.t2k.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1vd6A)F104 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)F104 Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)P105 T0547 81 :AVYPLK 1vd6A 97 :FNVELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29525 # 1o08A.81.109 read from T0547.t2k.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 81 :AVY 1o08A 1110 :IAL T0547 85 :LKVNQ 1o08A 1114 :SASKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29527 1ta0A expands to /projects/compbio/data/pdb/1ta0.pdb.gz 1ta0A:Bad short name: BE for alphabet: pdb_atoms Bad short name: F1 for alphabet: pdb_atoms Bad short name: F2 for alphabet: pdb_atoms Bad short name: F3 for alphabet: pdb_atoms # 1ta0A.81.50 read from T0547.t2k.many.frag # adding 1ta0A to template set # found chain 1ta0A in template set Warning: unaligning (T0547)P84 (1ta0A)V129 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1ta0A)P133 because P (beta_P) conformation "forbidden" or filtered. T0547 81 :AVY 1ta0A 126 :QVY T0547 85 :LKV 1ta0A 130 :LKR T0547 89 :Q 1ta0A 134 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=29530 1floA expands to /projects/compbio/data/pdb/1flo.pdb.gz 1floA:# 1floA.81.75 read from T0547.t2k.many.frag # adding 1floA to template set # found chain 1floA in template set Warning: unaligning (T0547)Y83 (1floA)F79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1floA)T83 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AV 1floA 77 :LQ T0547 84 :PLK 1floA 80 :KYK T0547 88 :NQ 1floA 84 :QK Number of specific fragments extracted= 3 number of extra gaps= 2 total=29533 1t8tA expands to /projects/compbio/data/pdb/1t8t.pdb.gz 1t8tA:Skipped atom 1386, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1388, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1390, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1392, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1394, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1396, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1398, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1400, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1402, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1404, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1406, because occupancy 0.500 <= existing 0.500 in 1t8tA # 1t8tA.81.20 read from T0547.t2k.many.frag # adding 1t8tA to template set # found chain 1t8tA in template set Warning: unaligning (T0547)A81 (1t8tA)I156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (1t8tA)V160 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1t8tA)V160 T0547 82 :VY 1t8tA 157 :II T0547 86 :KVNQ 1t8tA 161 :KKGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=29535 # 1xccA.81.34 read from T0547.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)P84 (1xccA)S38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1xccA)F43 because L (left) conformation "forbidden" or filtered. T0547 81 :AVY 1xccA 35 :ILF T0547 85 :LKVN 1xccA 39 :HPND Number of specific fragments extracted= 2 number of extra gaps= 2 total=29537 # 1pjr.81.27 read from T0547.t2k.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)K86 (1pjr)A33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1pjr)G34 because T (delta_L) conformation "forbidden" or filtered. T0547 81 :AVYPL 1pjr 28 :LIMAG T0547 88 :NQ 1pjr 35 :SG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29539 # 1vefA.81.105 read from T0547.t2k.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)L85 (1vefA)V110 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVYP 1vefA 106 :RVFP T0547 86 :KVNQ 1vefA 111 :NSGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29541 2bo4A expands to /projects/compbio/data/pdb/2bo4.pdb.gz 2bo4A:# 2bo4A.81.3 read from T0547.t2k.many.frag # adding 2bo4A to template set # found chain 2bo4A in template set Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE in next template residue (2bo4A)H10 Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE at template residue (2bo4A)H10 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE at template residue (2bo4A)E11 T0547 81 :AVYPL 2bo4A 4 :VVFPF T0547 89 :Q 2bo4A 12 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=29543 # 1qwnA.81.125 read from T0547.t2k.many.frag # found chain 1qwnA in training set T0547 81 :AVYPLKVNQ 1qwnA 126 :FIWAEISYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29544 # 1zc6A.81.78 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)P84 (1zc6A)G82 because D (zeta) conformation "forbidden" or filtered. T0547 81 :AVY 1zc6A 79 :IGL T0547 85 :LKVNQ 1zc6A 83 :LSGVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=29546 # 1ne9A.81.69 read from T0547.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)P84 (1ne9A)A73 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1ne9A)P77 because C (cis) conformation "forbidden" or filtered. T0547 81 :AVY 1ne9A 70 :FAY T0547 85 :LKV 1ne9A 74 :SKG T0547 89 :Q 1ne9A 78 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=29549 1pii expands to /projects/compbio/data/pdb/1pii.pdb.gz 1pii:Warning: there is no chain 1pii will retry with 1piiA Skipped atom 428, because occupancy 0.540 <= existing 0.540 in 1pii Skipped atom 436, because occupancy 0.530 <= existing 0.700 in 1pii Skipped atom 438, because occupancy 0.390 <= existing 0.640 in 1pii Skipped atom 1193, because occupancy 0.710 <= existing 0.710 in 1pii Skipped atom 1195, because occupancy 0.650 <= existing 0.670 in 1pii Skipped atom 1197, because occupancy 0.680 <= existing 0.680 in 1pii Skipped atom 1199, because occupancy 0.820 <= existing 0.860 in 1pii Skipped atom 1201, because occupancy 0.650 <= existing 0.750 in 1pii Skipped atom 1203, because occupancy 0.620 <= existing 0.830 in 1pii Skipped atom 1205, because occupancy 0.750 <= existing 0.800 in 1pii Skipped atom 1207, because occupancy 0.540 <= existing 0.630 in 1pii Skipped atom 1570, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1572, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1574, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1576, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1578, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1580, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1582, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1584, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1586, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1588, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1590, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 2537, because occupancy 0.510 <= existing 0.520 in 1pii Skipped atom 2539, because occupancy 0.450 <= existing 0.450 in 1pii Skipped atom 2541, because occupancy 0.470 <= existing 0.470 in 1pii Skipped atom 2543, because occupancy 0.550 <= existing 0.550 in 1pii Skipped atom 2545, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 2547, because occupancy 0.490 <= existing 0.540 in 1pii Skipped atom 2549, because occupancy 0.440 <= existing 0.510 in 1pii Skipped atom 2902, because occupancy 0.620 <= existing 0.620 in 1pii Skipped atom 2906, because occupancy 0.600 <= existing 0.600 in 1pii Skipped atom 2908, because occupancy 0.480 <= existing 0.480 in 1pii Skipped atom 2910, because occupancy 0.510 <= existing 0.520 in 1pii Skipped atom 2912, because occupancy 0.410 <= existing 0.480 in 1pii Skipped atom 2914, because occupancy 0.350 <= existing 0.470 in 1pii Skipped atom 2918, because occupancy 0.380 <= existing 0.420 in 1pii Skipped atom 2922, because occupancy 0.560 <= existing 0.670 in 1pii # 1pii.81.50 read from T0547.t2k.many.frag # adding 1pii to template set # found chain 1pii in template set Warning: unaligning (T0547)A81 (1pii)I51 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE in next template residue (1pii)S60 T0547 82 :VYPLKVN 1pii 52 :LECKKAS Number of specific fragments extracted= 1 number of extra gaps= 2 total=29550 # 2aebA.81.94 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)A81 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G99 T0547 82 :VY 2aebA 96 :VL T0547 86 :KVNQ 2aebA 100 :DHSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29552 # 1knwA.82.49 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 82 :VYPLKVNQY 1knwA 50 :RFAQKACSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29553 # 7odcA.82.64 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 82 :VYPLKVNQY 7odcA 65 :FYAVKCNDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29554 # 1v5vA.82.152 read from T0547.t2k.many.frag # found chain 1v5vA in training set Warning: unaligning (T0547)P84 (1v5vA)A155 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1v5vA 153 :MF T0547 85 :LKVNQY 1v5vA 156 :VQGPKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29556 # 2f2hA.82.238 read from T0547.t2k.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 82 :VYPLKV 2f2hA 239 :YFVIDG T0547 89 :QY 2f2hA 246 :TP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29558 # 1ox0A.82.206 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)Y83 (1ox0A)G189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :V 1ox0A 188 :V T0547 85 :LKVNQY 1ox0A 191 :TEASIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29560 # 1z9hA.82.16 read from T0547.t2k.many.frag # found chain 1z9hA in template set Warning: unaligning (T0547)P84 (1z9hA)Q106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1z9hA)T109 because G (3-10) conformation "forbidden" or filtered. T0547 82 :VY 1z9hA 104 :LY T0547 85 :LK 1z9hA 107 :YK T0547 88 :NQY 1z9hA 110 :CPF Number of specific fragments extracted= 3 number of extra gaps= 2 total=29563 # 1ryoA.82.36 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :VY 1ryoA 37 :VA T0547 85 :LKVN 1ryoA 40 :VKKA T0547 90 :Y 1ryoA 45 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=29566 # 1s95A.82.71 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1s95A)T243 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1s95A)G245 because L (left) conformation "forbidden" or filtered. T0547 82 :VY 1s95A 238 :TV T0547 85 :LK 1s95A 241 :GD T0547 88 :N 1s95A 244 :H T0547 90 :Y 1s95A 246 :Q Number of specific fragments extracted= 4 number of extra gaps= 3 total=29570 # 1q9jA.82.119 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)P84 (1q9jA)L122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1q9jA)A127 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :VY 1q9jA 120 :LY T0547 85 :LKVN 1q9jA 123 :HHCM T0547 90 :Y 1q9jA 128 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=29573 # 2fqxA.82.65 read from T0547.t2k.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (2fqxA)G85 because S (epsilon) conformation "forbidden" or filtered. T0547 82 :VY 2fqxA 81 :VV T0547 85 :L 2fqxA 84 :C T0547 87 :VNQY 2fqxA 86 :SFLV Number of specific fragments extracted= 3 number of extra gaps= 2 total=29576 1vbkA expands to /projects/compbio/data/pdb/1vbk.pdb.gz 1vbkA:# 1vbkA.82.49 read from T0547.t2k.many.frag # adding 1vbkA to template set # found chain 1vbkA in template set Warning: unaligning (T0547)P84 (1vbkA)I52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1vbkA)K54 because P (beta_P) conformation "forbidden" or filtered. T0547 82 :VY 1vbkA 50 :RI T0547 85 :L 1vbkA 53 :V T0547 87 :VNQY 1vbkA 55 :TNSP Number of specific fragments extracted= 3 number of extra gaps= 2 total=29579 # 1gqiA.82.108 read from T0547.t2k.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)P84 (1gqiA)I115 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1gqiA 113 :VV T0547 85 :LKVNQY 1gqiA 116 :VAANSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29581 # 1hd2A.82.35 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)P84 (1hd2A)G38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1hd2A)F43 because T (delta_L) conformation "forbidden" or filtered. T0547 82 :VY 1hd2A 36 :LF T0547 85 :LKVN 1hd2A 39 :VPGA T0547 90 :Y 1hd2A 44 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=29584 # 1floA.82.76 read from T0547.t2k.many.frag # found chain 1floA in template set T0547 82 :VYPLKVNQY 1floA 78 :QFKYKTQKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29585 # 1vd6A.82.97 read from T0547.t2k.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1vd6A)F104 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)F104 Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)P105 Warning: unaligning (T0547)Y90 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)G106 T0547 82 :VYPLK 1vd6A 98 :NVELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29586 # 1vk1A.82.196 read from T0547.t2k.many.frag # found chain 1vk1A in training set Warning: unaligning (T0547)P84 (1vk1A)I199 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk1A)A202 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk1A)A202 T0547 82 :VY 1vk1A 197 :VF T0547 88 :NQY 1vk1A 203 :PTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29588 # 1ta0A.82.51 read from T0547.t2k.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)P84 (1ta0A)V129 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1ta0A)P133 because P (beta_P) conformation "forbidden" or filtered. T0547 82 :VY 1ta0A 127 :VY T0547 85 :LKV 1ta0A 130 :LKR T0547 89 :QY 1ta0A 134 :HV Number of specific fragments extracted= 3 number of extra gaps= 2 total=29591 # 1t8tA.82.21 read from T0547.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (1t8tA)V160 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1t8tA)V160 Warning: unaligning (T0547)V87 (1t8tA)K162 because T (delta_L) conformation "forbidden" or filtered. T0547 82 :VY 1t8tA 157 :II T0547 86 :K 1t8tA 161 :K T0547 88 :NQY 1t8tA 163 :GGT Number of specific fragments extracted= 3 number of extra gaps= 2 total=29594 # 1wdaA.82.314 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wdaA)I313 Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)I313 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)F314 T0547 82 :VY 1wdaA 308 :VY T0547 85 :L 1wdaA 311 :C T0547 89 :QY 1wdaA 315 :EN Number of specific fragments extracted= 3 number of extra gaps= 2 total=29597 # 2b8mA.82.95 read from T0547.t2k.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)P84 (2b8mA)V97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (2b8mA)P101 because C (cis) conformation "forbidden" or filtered. T0547 82 :VY 2b8mA 95 :FF T0547 85 :LKV 2b8mA 98 :VKA T0547 89 :QY 2b8mA 102 :HP Number of specific fragments extracted= 3 number of extra gaps= 2 total=29600 # 1r9jA.82.152 read from T0547.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)P84 (1r9jA)C153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1r9jA)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :VY 1r9jA 151 :VY T0547 86 :KVNQY 1r9jA 155 :DGCLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=29602 # 1zc6A.82.79 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)P84 (1zc6A)G82 because D (zeta) conformation "forbidden" or filtered. T0547 82 :VY 1zc6A 80 :GL T0547 85 :LKVNQY 1zc6A 83 :LSGVHN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29604 # 1o08A.82.110 read from T0547.t2k.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 82 :VY 1o08A 1111 :AL T0547 85 :LKVNQY 1o08A 1114 :SASKNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29606 # 1pjr.82.28 read from T0547.t2k.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)V87 (1pjr)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1pjr)G36 because L (left) conformation "forbidden" or filtered. T0547 82 :VYPLK 1pjr 29 :IMAGA T0547 88 :N 1pjr 35 :S T0547 90 :Y 1pjr 37 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=29609 # 1pii.82.51 read from T0547.t2k.many.frag # found chain 1pii in template set Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE in next template residue (1pii)S60 Warning: unaligning (T0547)Y90 because of BadResidue code BAD_PEPTIDE at template residue (1pii)S60 T0547 82 :VYPLKVN 1pii 52 :LECKKAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=29610 # 1b25A.82.76 read from T0547.t2k.many.frag # found chain 1b25A in template set Warning: unaligning (T0547)P84 (1b25A)A79 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1b25A)A80 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :VY 1b25A 77 :VV T0547 86 :KVNQY 1b25A 81 :KSPLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29612 # 2bo4A.82.4 read from T0547.t2k.many.frag # found chain 2bo4A in template set Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE in next template residue (2bo4A)H10 Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE at template residue (2bo4A)H10 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE at template residue (2bo4A)E11 Warning: unaligning (T0547)Q89 (2bo4A)H12 because P (beta_P) conformation "forbidden" or filtered. T0547 82 :VYPL 2bo4A 5 :VFPF T0547 90 :Y 2bo4A 13 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=29614 # 1zhvA.82.102 read from T0547.t2k.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)P84 (1zhvA)L106 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1zhvA 104 :HL T0547 85 :LKVNQY 1zhvA 107 :VRSNDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29616 # 8abp.82.5 read from T0547.t2k.many.frag # found chain 8abp in training set Warning: unaligning (T0547)P84 (8abp)L8 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 8abp 6 :GF T0547 85 :LKVNQY 8abp 9 :VKQPEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29618 # 1qwgA.82.16 read from T0547.t2k.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)V87 (1qwgA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 82 :VYPLK 1qwgA 17 :VVLDK T0547 88 :NQY 1qwgA 23 :LPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29620 # 1knwA.83.50 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 83 :YPLKVNQYP 1knwA 51 :FAQKACSNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29621 # 7odcA.83.65 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N88 (7odcA)N71 because D (zeta) conformation "forbidden" or filtered. T0547 83 :YPLKV 7odcA 66 :YAVKC T0547 89 :QYP 7odcA 72 :DSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29623 # 1v5vA.83.153 read from T0547.t2k.many.frag # found chain 1v5vA in training set Warning: unaligning (T0547)P84 (1v5vA)A155 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1v5vA)G158 because S (epsilon) conformation "forbidden" or filtered. T0547 83 :Y 1v5vA 154 :F T0547 85 :LK 1v5vA 156 :VQ T0547 88 :NQYP 1v5vA 159 :PKAR Number of specific fragments extracted= 3 number of extra gaps= 2 total=29626 # 1ryoA.83.37 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :Y 1ryoA 38 :A T0547 85 :LKVN 1ryoA 40 :VKKA T0547 90 :YP 1ryoA 45 :YL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29629 # 1vbkA.83.50 read from T0547.t2k.many.frag # found chain 1vbkA in template set Warning: unaligning (T0547)P84 (1vbkA)I52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1vbkA)K54 because P (beta_P) conformation "forbidden" or filtered. T0547 83 :Y 1vbkA 51 :I T0547 85 :L 1vbkA 53 :V T0547 87 :VNQYP 1vbkA 55 :TNSPK Number of specific fragments extracted= 3 number of extra gaps= 2 total=29632 # 1z9hA.83.17 read from T0547.t2k.many.frag # found chain 1z9hA in template set Warning: unaligning (T0547)P84 (1z9hA)Q106 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :Y 1z9hA 105 :Y T0547 85 :LKVNQYP 1z9hA 107 :YKTCPFC Number of specific fragments extracted= 2 number of extra gaps= 1 total=29634 # 2f2hA.83.239 read from T0547.t2k.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 83 :YPLKV 2f2hA 240 :FVIDG T0547 89 :QYP 2f2hA 246 :TPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29636 # 1gqiA.83.109 read from T0547.t2k.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)P84 (1gqiA)I115 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 1gqiA 114 :V T0547 85 :LKVNQYP 1gqiA 116 :VAANSDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29638 # 1ox0A.83.207 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1ox0A)E192 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1ox0A)S194 because G (3-10) conformation "forbidden" or filtered. T0547 83 :Y 1ox0A 189 :G T0547 85 :L 1ox0A 191 :T T0547 87 :V 1ox0A 193 :A T0547 89 :QYP 1ox0A 195 :ITP Number of specific fragments extracted= 4 number of extra gaps= 3 total=29642 # 1t8tA.83.22 read from T0547.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (1t8tA)V160 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1t8tA)V160 Warning: unaligning (T0547)Q89 (1t8tA)G164 because T (delta_L) conformation "forbidden" or filtered. T0547 83 :Y 1t8tA 158 :I T0547 86 :KVN 1t8tA 161 :KKG T0547 90 :YP 1t8tA 165 :TR Number of specific fragments extracted= 3 number of extra gaps= 2 total=29645 # 2fqxA.83.66 read from T0547.t2k.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 2fqxA 82 :V T0547 85 :LKVNQYP 2fqxA 84 :CGSFLVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29647 # 1q9jA.83.120 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)P84 (1q9jA)L122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1q9jA)A127 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :Y 1q9jA 121 :Y T0547 85 :LKVN 1q9jA 123 :HHCM T0547 90 :YP 1q9jA 128 :DG Number of specific fragments extracted= 3 number of extra gaps= 2 total=29650 # 1ta0A.83.52 read from T0547.t2k.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)P84 (1ta0A)V129 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 1ta0A 128 :Y T0547 85 :LKVNQYP 1ta0A 130 :LKRPHVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29652 # 1s95A.83.72 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1s95A)G245 because L (left) conformation "forbidden" or filtered. T0547 83 :Y 1s95A 239 :V T0547 85 :LKVN 1s95A 241 :GDTH T0547 90 :YP 1s95A 246 :QF Number of specific fragments extracted= 3 number of extra gaps= 2 total=29655 # 1vk1A.83.197 read from T0547.t2k.many.frag # found chain 1vk1A in training set Warning: unaligning (T0547)P84 (1vk1A)I199 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk1A)A202 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk1A)A202 T0547 83 :Y 1vk1A 198 :F T0547 88 :NQYP 1vk1A 203 :PTKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29657 # 1floA.83.77 read from T0547.t2k.many.frag # found chain 1floA in template set T0547 83 :YPLKVNQYP 1floA 79 :FKYKTQKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29658 # 1zhvA.83.103 read from T0547.t2k.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)P84 (1zhvA)L106 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 1zhvA 105 :L T0547 85 :LKVNQYP 1zhvA 107 :VRSNDLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29660 # 1ua4A.83.33 read from T0547.t2k.many.frag # found chain 1ua4A in template set T0547 83 :YPLKVNQYP 1ua4A 34 :DAIKYLDSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29661 # 1hd2A.83.36 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)P84 (1hd2A)G38 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 1hd2A 37 :F T0547 85 :LKVNQYP 1hd2A 39 :VPGAFTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29663 # 1q5xA.83.36 read from T0547.t2k.many.frag # found chain 1q5xA in template set Warning: unaligning (T0547)P91 (1q5xA)N45 because G (3-10) conformation "forbidden" or filtered. T0547 83 :YPLKVNQY 1q5xA 37 :ITVKCFED Number of specific fragments extracted= 1 number of extra gaps= 1 total=29664 # 1r0mA.83.168 read from T0547.t2k.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)K86 (1r0mA)K172 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :YPL 1r0mA 169 :LKI T0547 87 :VNQYP 1r0mA 173 :PGWDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29666 # 1vd6A.83.98 read from T0547.t2k.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1vd6A)F104 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)F104 Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)P105 Warning: unaligning (T0547)Y90 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)G106 Warning: unaligning (T0547)P91 (1vd6A)L107 because G (3-10) conformation "forbidden" or filtered. T0547 83 :YPLK 1vd6A 99 :VELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29667 # 1zc6A.83.80 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)P84 (1zc6A)G82 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P91 (1zc6A)R89 because T (delta_L) conformation "forbidden" or filtered. T0547 83 :Y 1zc6A 81 :L T0547 85 :LKVNQY 1zc6A 83 :LSGVHN Number of specific fragments extracted= 2 number of extra gaps= 2 total=29669 # 1m2oA.83.125 read from T0547.t2k.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)P84 (1m2oA)V127 because D (zeta) conformation "forbidden" or filtered. T0547 83 :Y 1m2oA 126 :F T0547 85 :LKVNQYP 1m2oA 128 :VDLTSET Number of specific fragments extracted= 2 number of extra gaps= 1 total=29671 # 1qwgA.83.17 read from T0547.t2k.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)V87 (1qwgA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 83 :YPLK 1qwgA 18 :VLDK T0547 88 :NQYP 1qwgA 23 :LPPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29673 # 2cvbA.83.37 read from T0547.t2k.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)P84 (2cvbA)V39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (2cvbA)M41 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :Y 2cvbA 38 :V T0547 85 :L 2cvbA 40 :F T0547 87 :VNQYP 2cvbA 42 :CNHCP Number of specific fragments extracted= 3 number of extra gaps= 2 total=29676 # 1wdaA.83.315 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1wdaA)C311 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wdaA)I313 Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)I313 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)F314 Warning: unaligning (T0547)P91 (1wdaA)E317 because G (3-10) conformation "forbidden" or filtered. T0547 83 :Y 1wdaA 309 :Y T0547 89 :QY 1wdaA 315 :EN Number of specific fragments extracted= 2 number of extra gaps= 2 total=29678 # 2b8mA.83.96 read from T0547.t2k.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)P84 (2b8mA)V97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (2b8mA)P101 because C (cis) conformation "forbidden" or filtered. T0547 83 :Y 2b8mA 96 :F T0547 85 :LKV 2b8mA 98 :VKA T0547 89 :QYP 2b8mA 102 :HPK Number of specific fragments extracted= 3 number of extra gaps= 2 total=29681 # 1r9jA.83.153 read from T0547.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)P84 (1r9jA)C153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1r9jA)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :Y 1r9jA 152 :Y T0547 86 :KVNQYP 1r9jA 155 :DGCLME Number of specific fragments extracted= 2 number of extra gaps= 1 total=29683 1xrjA expands to /projects/compbio/data/pdb/1xrj.pdb.gz 1xrjA:# 1xrjA.83.25 read from T0547.t2k.many.frag # adding 1xrjA to template set # found chain 1xrjA in template set Warning: unaligning (T0547)P84 (1xrjA)G27 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1xrjA)A30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1xrjA)G32 because T (delta_L) conformation "forbidden" or filtered. T0547 83 :Y 1xrjA 26 :S T0547 85 :LK 1xrjA 28 :GT T0547 88 :N 1xrjA 31 :S T0547 90 :YP 1xrjA 33 :KS Number of specific fragments extracted= 4 number of extra gaps= 3 total=29687 # 7odcA.84.66 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 84 :PLKVNQYPG 7odcA 67 :AVKCNDSRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29688 # 1knwA.84.51 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 84 :PLKVNQYPG 1knwA 52 :AQKACSNIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29689 # 1vbkA.84.51 read from T0547.t2k.many.frag # found chain 1vbkA in template set Warning: unaligning (T0547)P84 (1vbkA)I52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1vbkA)S57 because D (zeta) conformation "forbidden" or filtered. T0547 85 :LKVN 1vbkA 53 :VKTN T0547 90 :YPG 1vbkA 58 :PKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=29691 # 1v5vA.84.154 read from T0547.t2k.many.frag # found chain 1v5vA in training set Warning: unaligning (T0547)P84 (1v5vA)A155 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1v5vA 156 :VQGPKARD Number of specific fragments extracted= 1 number of extra gaps= 1 total=29692 # 1ryoA.84.38 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :LKVN 1ryoA 40 :VKKA T0547 90 :YPG 1ryoA 45 :YLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=29694 # 1z9hA.84.18 read from T0547.t2k.many.frag # found chain 1z9hA in template set Warning: unaligning (T0547)P84 (1z9hA)Q106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1z9hA)C110 because P (beta_P) conformation "forbidden" or filtered. T0547 85 :LKV 1z9hA 107 :YKT T0547 89 :QYPG 1z9hA 111 :PFCS Number of specific fragments extracted= 2 number of extra gaps= 2 total=29696 # 1floA.84.78 read from T0547.t2k.many.frag # found chain 1floA in template set T0547 84 :PLKVNQYPG 1floA 80 :KYKTQKATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29697 # 1ox0A.84.208 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1ox0A 191 :TEASITPF Number of specific fragments extracted= 1 number of extra gaps= 1 total=29698 # 2fqxA.84.67 read from T0547.t2k.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 2fqxA 84 :CGSFLVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29699 # 2f2hA.84.240 read from T0547.t2k.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 84 :PLKV 2f2hA 241 :VIDG T0547 89 :QYPG 2f2hA 246 :TPKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29701 # 1t8tA.84.23 read from T0547.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (1t8tA)V160 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1t8tA)V160 Warning: unaligning (T0547)Q89 (1t8tA)G164 because T (delta_L) conformation "forbidden" or filtered. T0547 86 :KVN 1t8tA 161 :KKG T0547 90 :YPG 1t8tA 165 :TRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=29703 # 1q9jA.84.121 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)P84 (1q9jA)L122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1q9jA)A127 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :LKVN 1q9jA 123 :HHCM T0547 90 :YPG 1q9jA 128 :DGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=29705 # 1gqiA.84.110 read from T0547.t2k.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)P84 (1gqiA)I115 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1gqiA 116 :VAANSDVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=29706 # 1zhvA.84.104 read from T0547.t2k.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)P84 (1zhvA)L106 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1zhvA 107 :VRSNDLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29707 # 1vk1A.84.198 read from T0547.t2k.many.frag # found chain 1vk1A in training set Warning: unaligning (T0547)P84 (1vk1A)I199 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk1A)A202 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk1A)A202 Warning: unaligning (T0547)N88 (1vk1A)P203 because P (beta_P) conformation "forbidden" or filtered. T0547 89 :QYPG 1vk1A 204 :TKEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29708 # 1s95A.84.73 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1s95A)G245 because L (left) conformation "forbidden" or filtered. T0547 85 :LKVN 1s95A 241 :GDTH T0547 90 :YPG 1s95A 246 :QFY Number of specific fragments extracted= 2 number of extra gaps= 2 total=29710 # 1ta0A.84.53 read from T0547.t2k.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)P84 (1ta0A)V129 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1ta0A 130 :LKRPHVDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29711 # 1qwgA.84.18 read from T0547.t2k.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)N88 (1qwgA)L23 because P (beta_P) conformation "forbidden" or filtered. T0547 84 :PLKV 1qwgA 19 :LDKG T0547 89 :QYPG 1qwgA 24 :PPKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29713 # 1yq2A.84.367 read from T0547.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE in next template residue (1yq2A)H369 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (1yq2A)H369 T0547 84 :P 1yq2A 367 :T T0547 87 :VNQYPG 1yq2A 370 :YPPHPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29715 # 1tfzA.84.121 read from T0547.t2k.many.frag # found chain 1tfzA in training set T0547 84 :PLKVNQYPG 1tfzA 122 :AIEVEDAES Number of specific fragments extracted= 1 number of extra gaps= 0 total=29716 # 1ua4A.84.34 read from T0547.t2k.many.frag # found chain 1ua4A in template set T0547 84 :PLKVNQYPG 1ua4A 35 :AIKYLDSKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29717 # 1m2oA.84.126 read from T0547.t2k.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)P84 (1m2oA)V127 because D (zeta) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1m2oA 128 :VDLTSETE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29718 # 1hw1A.84.67 read from T0547.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0547)K86 (1hw1A)K70 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G92 (1hw1A)E76 because G (3-10) conformation "forbidden" or filtered. T0547 84 :PL 1hw1A 68 :PT T0547 87 :VNQYP 1hw1A 71 :VNNFW Number of specific fragments extracted= 2 number of extra gaps= 2 total=29720 # 2cvbA.84.38 read from T0547.t2k.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)P84 (2cvbA)V39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (2cvbA)M41 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :L 2cvbA 40 :F T0547 87 :VNQYPG 2cvbA 42 :CNHCPY Number of specific fragments extracted= 2 number of extra gaps= 2 total=29722 # 1xccA.84.37 read from T0547.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)P84 (1xccA)S38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1xccA)D42 because P (beta_P) conformation "forbidden" or filtered. T0547 85 :LKV 1xccA 39 :HPN T0547 89 :QYPG 1xccA 43 :FTPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=29724 # 1g3p.84.166 read from T0547.t2k.many.frag # found chain 1g3p in training set T0547 84 :PLKVNQYPG 1g3p 167 :QYTPVSSKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29725 # 1fvkA.84.23 read from T0547.t2k.many.frag # found chain 1fvkA in training set Warning: unaligning (T0547)P84 (1fvkA)E24 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1fvkA 25 :FFSFFCPH Number of specific fragments extracted= 1 number of extra gaps= 1 total=29726 1bli expands to /projects/compbio/data/pdb/1bli.pdb.gz 1bli:Warning: there is no chain 1bli will retry with 1bliA # 1bli.84.198 read from T0547.t2k.many.frag # adding 1bli to template set # found chain 1bli in template set T0547 84 :PLKVNQYPG 1bli 199 :ADIDYDHPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29727 1ywfA expands to /projects/compbio/data/pdb/1ywf.pdb.gz 1ywfA:# 1ywfA.84.50 read from T0547.t2k.many.frag # adding 1ywfA to template set # found chain 1ywfA in template set T0547 84 :PLKVNQYPG 1ywfA 31 :SELSRLDDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29728 # 1r0mA.84.169 read from T0547.t2k.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)N88 (1r0mA)G174 because T (delta_L) conformation "forbidden" or filtered. T0547 84 :PLKV 1r0mA 170 :KIKP T0547 89 :QYPG 1r0mA 175 :WDVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=29730 # 7odcA.85.67 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 85 :LKVNQYPGF 7odcA 68 :VKCNDSRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29731 # 1knwA.85.52 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 85 :LKVNQYPGF 1knwA 53 :QKACSNIHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29732 # 1v5vA.85.155 read from T0547.t2k.many.frag # found chain 1v5vA in training set T0547 85 :LKVNQYPGF 1v5vA 156 :VQGPKARDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29733 # 1vbkA.85.52 read from T0547.t2k.many.frag # found chain 1vbkA in template set T0547 85 :LKVNQYPGF 1vbkA 53 :VKTNSPKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29734 # 1ryoA.85.39 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 85 :LKVNQYPGF 1ryoA 40 :VKKASYLDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=29735 # 1floA.85.79 read from T0547.t2k.many.frag # found chain 1floA in template set T0547 85 :LKVNQYPGF 1floA 81 :YKTQKATIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29736 # 1ox0A.85.209 read from T0547.t2k.many.frag # found chain 1ox0A in training set T0547 85 :LKVNQYPGF 1ox0A 191 :TEASITPFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29737 # 2fqxA.85.68 read from T0547.t2k.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)K86 (2fqxA)G85 because S (epsilon) conformation "forbidden" or filtered. T0547 85 :L 2fqxA 84 :C T0547 87 :VNQYPGF 2fqxA 86 :SFLVEAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29739 # 1z9hA.85.19 read from T0547.t2k.many.frag # found chain 1z9hA in template set Warning: unaligning (T0547)V87 (1z9hA)T109 because G (3-10) conformation "forbidden" or filtered. T0547 85 :LK 1z9hA 107 :YK T0547 88 :NQYPGF 1z9hA 110 :CPFCSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29741 # 1t8tA.85.24 read from T0547.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1t8tA)V160 Warning: unaligning (T0547)V87 (1t8tA)K162 because T (delta_L) conformation "forbidden" or filtered. T0547 86 :K 1t8tA 161 :K T0547 88 :NQYPGF 1t8tA 163 :GGTRAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29743 # 2f2hA.85.241 read from T0547.t2k.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 85 :LKV 2f2hA 242 :IDG T0547 89 :QYPGF 2f2hA 246 :TPKAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29745 # 1s95A.85.74 read from T0547.t2k.many.frag # found chain 1s95A in training set T0547 85 :LKVNQYPGF 1s95A 241 :GDTHGQFYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29746 # 1yq2A.85.368 read from T0547.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE in next template residue (1yq2A)H369 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (1yq2A)H369 Warning: unaligning (T0547)V87 (1yq2A)Y370 because Y (epsilon') conformation "forbidden" or filtered. T0547 88 :NQYPGF 1yq2A 371 :PPHPRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29747 # 1q9jA.85.122 read from T0547.t2k.many.frag # found chain 1q9jA in template set T0547 85 :LKVNQYPGF 1q9jA 123 :HHCMADGHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29748 # 1ta0A.85.54 read from T0547.t2k.many.frag # found chain 1ta0A in template set T0547 85 :LKVNQYPGF 1ta0A 130 :LKRPHVDEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29749 # 1qwgA.85.19 read from T0547.t2k.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)V87 (1qwgA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 85 :LK 1qwgA 20 :DK T0547 88 :NQYPGF 1qwgA 23 :LPPKFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29751 # 1jftA.85.120 read from T0547.t2k.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)V87 (1jftA)S124 because T (delta_L) conformation "forbidden" or filtered. T0547 85 :LK 1jftA 122 :MC T0547 88 :NQYPGF 1jftA 125 :EYPEPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29753 # 1vk1A.85.199 read from T0547.t2k.many.frag # found chain 1vk1A in training set Warning: unaligning (T0547)L85 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk1A)A202 Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk1A)A202 Warning: unaligning (T0547)N88 (1vk1A)P203 because P (beta_P) conformation "forbidden" or filtered. T0547 89 :QYPGF 1vk1A 204 :TKEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29754 # 1g3p.85.167 read from T0547.t2k.many.frag # found chain 1g3p in training set Warning: unaligning (T0547)K86 (1g3p)T169 because P (beta_P) conformation "forbidden" or filtered. T0547 85 :L 1g3p 168 :Y T0547 87 :VNQYPGF 1g3p 170 :PVSSKAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=29756 # 1tfzA.85.122 read from T0547.t2k.many.frag # found chain 1tfzA in training set T0547 85 :LKVNQYPGF 1tfzA 123 :IEVEDAESA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29757 # 1ywfA.85.51 read from T0547.t2k.many.frag # found chain 1ywfA in template set Warning: unaligning (T0547)Q89 (1ywfA)L36 because P (beta_P) conformation "forbidden" or filtered. T0547 85 :LKVN 1ywfA 32 :ELSR T0547 90 :YPGF 1ywfA 37 :DDAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29759 # 1bli.85.199 read from T0547.t2k.many.frag # found chain 1bli in template set T0547 85 :LKVNQYPGF 1bli 200 :DIDYDHPDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29760 # 1m2oA.85.127 read from T0547.t2k.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)V87 (1m2oA)L130 because G (3-10) conformation "forbidden" or filtered. T0547 85 :LK 1m2oA 128 :VD T0547 88 :NQYPGF 1m2oA 131 :TSETEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29762 # 1zhvA.85.105 read from T0547.t2k.many.frag # found chain 1zhvA in training set T0547 85 :LKVNQYPGF 1zhvA 107 :VRSNDLEKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29763 1zj8A expands to /projects/compbio/data/pdb/1zj8.pdb.gz 1zj8A:# 1zj8A.85.148 read from T0547.t2k.many.frag # adding 1zj8A to template set # found chain 1zj8A in template set T0547 85 :LKVNQYPGF 1zj8A 138 :IEVENVPEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29764 # 1xccA.85.38 read from T0547.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)Q89 (1xccA)F43 because L (left) conformation "forbidden" or filtered. T0547 85 :LKVN 1xccA 39 :HPND T0547 90 :YPGF 1xccA 44 :TPVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=29766 # 1gqiA.85.111 read from T0547.t2k.many.frag # found chain 1gqiA in training set T0547 85 :LKVNQYPGF 1gqiA 116 :VAANSDVGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29767 1dp4A expands to /projects/compbio/data/pdb/1dp4.pdb.gz 1dp4A:Skipped atom 541, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 543, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 545, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 547, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 549, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 551, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 553, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 555, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 557, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 1636, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 1638, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 1640, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 1642, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 2126, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 2128, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 2130, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 2132, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 2134, because occupancy 0.500 <= existing 0.500 in 1dp4A # 1dp4A.85.84 read from T0547.t2k.many.frag # adding 1dp4A to template set # found chain 1dp4A in template set T0547 85 :LKVNQYPGF 1dp4A 85 :GCVYSAAPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29768 # 1o08A.85.43 read from T0547.t2k.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)V87 (1o08A)G1046 because T (delta_L) conformation "forbidden" or filtered. T0547 85 :LK 1o08A 1044 :LK T0547 88 :NQYPGF 1o08A 1047 :VSREDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29770 # 1xrjA.85.27 read from T0547.t2k.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)V87 (1xrjA)A30 because L (left) conformation "forbidden" or filtered. T0547 85 :LK 1xrjA 28 :GT T0547 88 :NQYPGF 1xrjA 31 :SGKSSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29772 # 7odcA.86.68 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 86 :KVNQYPGFV 7odcA 69 :KCNDSRAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29773 # 1knwA.86.53 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 86 :KVNQYPGFV 1knwA 54 :KACSNIHIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29774 # 1v5vA.86.156 read from T0547.t2k.many.frag # found chain 1v5vA in training set T0547 86 :KVNQYPGFV 1v5vA 157 :QGPKARDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29775 # 1vbkA.86.53 read from T0547.t2k.many.frag # found chain 1vbkA in template set T0547 86 :KVNQYPGFV 1vbkA 54 :KTNSPKEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29776 # 1ryoA.86.40 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 86 :KVNQYPGFV 1ryoA 41 :KKASYLDCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29777 # 1ox0A.86.210 read from T0547.t2k.many.frag # found chain 1ox0A in training set T0547 86 :KVNQYPGFV 1ox0A 192 :EASITPFAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29778 # 1floA.86.80 read from T0547.t2k.many.frag # found chain 1floA in template set T0547 86 :KVNQYPGFV 1floA 82 :KTQKATILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29779 # 2fqxA.86.69 read from T0547.t2k.many.frag # found chain 2fqxA in training set T0547 86 :KVNQYPGFV 2fqxA 85 :GSFLVEAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29780 # 1yq2A.86.369 read from T0547.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (1yq2A)H369 Warning: unaligning (T0547)Q89 (1yq2A)P372 because P (beta_P) conformation "forbidden" or filtered. T0547 87 :VN 1yq2A 370 :YP T0547 90 :YPGFV 1yq2A 373 :HPRLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29782 # 1t8tA.86.25 read from T0547.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)Q89 (1t8tA)G164 because T (delta_L) conformation "forbidden" or filtered. T0547 86 :KVN 1t8tA 161 :KKG T0547 90 :YPGFV 1t8tA 165 :TRALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29784 # 1z9hA.86.20 read from T0547.t2k.many.frag # found chain 1z9hA in template set Warning: unaligning (T0547)V87 (1z9hA)T109 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1z9hA)C110 because P (beta_P) conformation "forbidden" or filtered. T0547 86 :K 1z9hA 108 :K T0547 89 :QYPGFV 1z9hA 111 :PFCSKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29786 # 2f2hA.86.242 read from T0547.t2k.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 86 :KV 2f2hA 243 :DG T0547 89 :QYPGFV 2f2hA 246 :TPKAVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29788 # 1s95A.86.75 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)Q89 (1s95A)G245 because L (left) conformation "forbidden" or filtered. T0547 86 :KVN 1s95A 242 :DTH T0547 90 :YPGFV 1s95A 246 :QFYDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29790 # 1jftA.86.121 read from T0547.t2k.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)V87 (1jftA)S124 because T (delta_L) conformation "forbidden" or filtered. T0547 86 :K 1jftA 123 :C T0547 88 :NQYPGFV 1jftA 125 :EYPEPLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29792 # 1m2oA.86.128 read from T0547.t2k.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)K86 (1m2oA)D129 because P (beta_P) conformation "forbidden" or filtered. T0547 87 :VNQYPGFV 1m2oA 130 :LTSETENL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29793 # 1g3p.86.168 read from T0547.t2k.many.frag # found chain 1g3p in training set T0547 86 :KVNQYPGFV 1g3p 169 :TPVSSKAMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29794 # 1zj8A.86.149 read from T0547.t2k.many.frag # found chain 1zj8A in template set T0547 86 :KVNQYPGFV 1zj8A 139 :EVENVPEIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=29795 # 1zhvA.86.106 read from T0547.t2k.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)K86 (1zhvA)R108 because P (beta_P) conformation "forbidden" or filtered. T0547 87 :VNQYPGFV 1zhvA 109 :SNDLEKTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29796 # 1sauA.86.65 read from T0547.t2k.many.frag # found chain 1sauA in training set Warning: unaligning (T0547)K86 (1sauA)V66 because Y (epsilon') conformation "forbidden" or filtered. T0547 87 :VNQYPGFV 1sauA 67 :APPVRMLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29797 # 1q9jA.86.123 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)Q89 (1q9jA)A127 because Y (epsilon') conformation "forbidden" or filtered. T0547 86 :KVN 1q9jA 124 :HCM T0547 90 :YPGFV 1q9jA 128 :DGHHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29799 # 1ta0A.86.55 read from T0547.t2k.many.frag # found chain 1ta0A in template set T0547 86 :KVNQYPGFV 1ta0A 131 :KRPHVDEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29800 # 1xrjA.86.28 read from T0547.t2k.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)Q89 (1xrjA)G32 because T (delta_L) conformation "forbidden" or filtered. T0547 86 :KVN 1xrjA 29 :TAS T0547 90 :YPGFV 1xrjA 33 :KSSVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=29802 # 1bli.86.200 read from T0547.t2k.many.frag # found chain 1bli in template set T0547 86 :KVNQYPGFV 1bli 201 :IDYDHPDVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29803 # 1xccA.86.39 read from T0547.t2k.many.frag # found chain 1xccA in template set T0547 86 :KVNQYPGFV 1xccA 40 :PNDFTPVCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29804 # 1qwgA.86.20 read from T0547.t2k.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)V87 (1qwgA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 86 :K 1qwgA 21 :K T0547 88 :NQYPGFV 1qwgA 23 :LPPKFVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29806 # 1r0mA.86.171 read from T0547.t2k.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)N88 (1r0mA)G174 because T (delta_L) conformation "forbidden" or filtered. T0547 86 :KV 1r0mA 172 :KP T0547 89 :QYPGFV 1r0mA 175 :WDVQPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29808 # 1vk1A.86.200 read from T0547.t2k.many.frag # found chain 1vk1A in training set Warning: unaligning (T0547)V87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk1A)A202 T0547 88 :NQYPGFV 1vk1A 203 :PTKEEVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29809 # 1o2dA.86.52 read from T0547.t2k.many.frag # found chain 1o2dA in training set T0547 86 :KVNQYPGFV 1o2dA 41 :KKNGSLDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29810 # 1tfzA.86.123 read from T0547.t2k.many.frag # found chain 1tfzA in training set T0547 86 :KVNQYPGFV 1tfzA 124 :EVEDAESAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29811 1i4wA expands to /projects/compbio/data/pdb/1i4w.pdb.gz 1i4wA:# 1i4wA.86.32 read from T0547.t2k.many.frag # adding 1i4wA to template set # found chain 1i4wA in template set T0547 86 :KVNQYPGFV 1i4wA 21 :KYLWNPTVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29812 # 1knwA.87.54 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 87 :VNQYPGFVK 1knwA 55 :ACSNIHILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29813 # 7odcA.87.69 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N88 (7odcA)N71 because D (zeta) conformation "forbidden" or filtered. T0547 87 :V 7odcA 70 :C T0547 89 :QYPGFVK 7odcA 72 :DSRAIVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29815 # 1ox0A.87.211 read from T0547.t2k.many.frag # found chain 1ox0A in training set T0547 87 :VNQYPGFVK 1ox0A 193 :ASITPFAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29816 # 1yq2A.87.370 read from T0547.t2k.many.frag # found chain 1yq2A in template set T0547 87 :VNQYPGFVK 1yq2A 370 :YPPHPRLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29817 # 1ryoA.87.41 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 87 :VN 1ryoA 42 :KA T0547 90 :YPGFVK 1ryoA 45 :YLDCIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29819 # 1v5vA.87.157 read from T0547.t2k.many.frag # found chain 1v5vA in training set T0547 87 :VNQYPGFVK 1v5vA 158 :GPKARDLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29820 # 1vbkA.87.54 read from T0547.t2k.many.frag # found chain 1vbkA in template set T0547 87 :VNQYPGFVK 1vbkA 55 :TNSPKEAAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29821 # 1floA.87.81 read from T0547.t2k.many.frag # found chain 1floA in template set T0547 87 :VNQYPGFVK 1floA 83 :TQKATILEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29822 # 1yacA.87.89 read from T0547.t2k.many.frag # found chain 1yacA in training set T0547 87 :VNQYPGFVK 1yacA 90 :AWDNEDFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29823 # 1n0qA.87.43 read from T0547.t2k.many.frag # found chain 1n0qA in training set Warning: unaligning (T0547)Q89 (1n0qA)G46 because L (left) conformation "forbidden" or filtered. T0547 87 :VN 1n0qA 44 :RN T0547 90 :YPGFVK 1n0qA 47 :HLEVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29825 # 2fqxA.87.70 read from T0547.t2k.many.frag # found chain 2fqxA in training set T0547 87 :VNQYPGFVK 2fqxA 86 :SFLVEAVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29826 # 1jftA.87.122 read from T0547.t2k.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)N88 (1jftA)E125 because E (beta_S) conformation "forbidden" or filtered. T0547 87 :V 1jftA 124 :S T0547 89 :QYPGFVK 1jftA 126 :YPEPLLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29828 # 1zj8A.87.150 read from T0547.t2k.many.frag # found chain 1zj8A in template set T0547 87 :VNQYPGFVK 1zj8A 140 :VENVPEIWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29829 # 2f2hA.87.243 read from T0547.t2k.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (2f2hA)T246 because E (beta_S) conformation "forbidden" or filtered. T0547 87 :V 2f2hA 244 :G T0547 90 :YPGFVK 2f2hA 247 :PKAVLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29831 # 1s95A.87.76 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)Q89 (1s95A)G245 because L (left) conformation "forbidden" or filtered. T0547 87 :VN 1s95A 243 :TH T0547 90 :YPGFVK 1s95A 246 :QFYDLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29833 1l7dA expands to /projects/compbio/data/pdb/1l7d.pdb.gz 1l7dA:# 1l7dA.87.15 read from T0547.t2k.many.frag # adding 1l7dA to template set # found chain 1l7dA in template set Warning: unaligning (T0547)Q89 (1l7dA)I18 because Y (epsilon') conformation "forbidden" or filtered. T0547 87 :VN 1l7dA 16 :VA T0547 90 :YPGFVK 1l7dA 19 :SPEVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29835 # 1t6cA.87.95 read from T0547.t2k.many.frag # found chain 1t6cA in training set T0547 87 :VNQYPGFVK 1t6cA 93 :AKNAEEFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29836 # 1z9hA.87.21 read from T0547.t2k.many.frag # found chain 1z9hA in template set T0547 87 :VNQYPGFVK 1z9hA 109 :TCPFCSKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29837 # 1sauA.87.66 read from T0547.t2k.many.frag # found chain 1sauA in training set T0547 87 :VNQYPGFVK 1sauA 67 :APPVRMLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29838 1ynfA expands to /projects/compbio/data/pdb/1ynf.pdb.gz 1ynfA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ynfA.87.221 read from T0547.t2k.many.frag # adding 1ynfA to template set # found chain 1ynfA in template set T0547 87 :VNQYPGFVK 1ynfA 211 :ARQTREASE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29839 # 1zhvA.87.107 read from T0547.t2k.many.frag # found chain 1zhvA in training set T0547 87 :VNQYPGFVK 1zhvA 109 :SNDLEKTAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29840 # 1r0mA.87.172 read from T0547.t2k.many.frag # found chain 1r0mA in training set T0547 87 :VNQYPGFVK 1r0mA 173 :PGWDVQPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29841 # 1t8tA.87.26 read from T0547.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)V87 (1t8tA)K162 because T (delta_L) conformation "forbidden" or filtered. T0547 88 :NQYPGFVK 1t8tA 163 :GGTRALLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29842 # 1xrjA.87.29 read from T0547.t2k.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)V87 (1xrjA)A30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1xrjA)G32 because T (delta_L) conformation "forbidden" or filtered. T0547 88 :N 1xrjA 31 :S T0547 90 :YPGFVK 1xrjA 33 :KSSVCA Number of specific fragments extracted= 2 number of extra gaps= 2 total=29844 # 1m2oA.87.129 read from T0547.t2k.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)V87 (1m2oA)L130 because G (3-10) conformation "forbidden" or filtered. T0547 88 :NQYPGFVK 1m2oA 131 :TSETENLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=29845 # 1xccA.87.40 read from T0547.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)Q89 (1xccA)F43 because L (left) conformation "forbidden" or filtered. T0547 87 :VN 1xccA 41 :ND T0547 90 :YPGFVK 1xccA 44 :TPVCTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29847 # 1w96A.87.140 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 87 :VNQYPGFVK 1w96A 153 :ASENPLLPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29848 1vkyA expands to /projects/compbio/data/pdb/1vky.pdb.gz 1vkyA:# 1vkyA.87.188 read from T0547.t2k.many.frag # adding 1vkyA to template set # found chain 1vkyA in template set T0547 87 :VNQYPGFVK 1vkyA 177 :LHFTPELIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29849 1szwA expands to /projects/compbio/data/pdb/1szw.pdb.gz 1szwA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1szwA.87.73 read from T0547.t2k.many.frag # adding 1szwA to template set # found chain 1szwA in template set Warning: unaligning (T0547)V87 (1szwA)G52 because T (delta_L) conformation "forbidden" or filtered. T0547 88 :NQYPGFVK 1szwA 53 :CNTRFVAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=29850 # 1z7aA.87.105 read from T0547.t2k.many.frag # found chain 1z7aA in training set T0547 87 :VNQYPGFVK 1z7aA 106 :AQRNPEVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29851 # 7odcA.88.70 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 88 :NQYPGFVKN 7odcA 71 :NDSRAIVST Number of specific fragments extracted= 1 number of extra gaps= 0 total=29852 # 1knwA.88.55 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 88 :NQYPGFVKN 1knwA 56 :CSNIHILRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29853 # 1yq2A.88.371 read from T0547.t2k.many.frag # found chain 1yq2A in template set T0547 88 :NQYPGFVKN 1yq2A 371 :PPHPRLLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29854 # 1n0qA.88.44 read from T0547.t2k.many.frag # found chain 1n0qA in training set Warning: unaligning (T0547)Q89 (1n0qA)G46 because L (left) conformation "forbidden" or filtered. T0547 88 :N 1n0qA 45 :N T0547 90 :YPGFVKN 1n0qA 47 :HLEVVKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29856 # 1ox0A.88.212 read from T0547.t2k.many.frag # found chain 1ox0A in training set T0547 88 :NQYPGFVKN 1ox0A 194 :SITPFAIAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29857 # 1ryoA.88.42 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 88 :NQYPGFVKN 1ryoA 43 :ASYLDCIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29858 # 1z7aA.88.106 read from T0547.t2k.many.frag # found chain 1z7aA in training set T0547 88 :NQYPGFVKN 1z7aA 107 :QRNPEVIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29859 # 1yacA.88.90 read from T0547.t2k.many.frag # found chain 1yacA in training set T0547 88 :NQYPGFVKN 1yacA 91 :WDNEDFVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29860 # 2fqxA.88.71 read from T0547.t2k.many.frag # found chain 2fqxA in training set T0547 88 :NQYPGFVKN 2fqxA 87 :FLVEAVIET Number of specific fragments extracted= 1 number of extra gaps= 0 total=29861 # 1l7dA.88.16 read from T0547.t2k.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)Q89 (1l7dA)I18 because Y (epsilon') conformation "forbidden" or filtered. T0547 88 :N 1l7dA 17 :A T0547 90 :YPGFVKN 1l7dA 19 :SPEVVKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29863 # 1jftA.88.123 read from T0547.t2k.many.frag # found chain 1jftA in template set T0547 88 :NQYPGFVKN 1jftA 125 :EYPEPLLAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29864 # 1vkyA.88.189 read from T0547.t2k.many.frag # found chain 1vkyA in template set T0547 88 :NQYPGFVKN 1vkyA 178 :HFTPELIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29865 # 1v5vA.88.158 read from T0547.t2k.many.frag # found chain 1v5vA in training set T0547 88 :NQYPGFVKN 1v5vA 159 :PKARDLAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29866 # 1zj8A.88.151 read from T0547.t2k.many.frag # found chain 1zj8A in template set T0547 88 :NQYPGFVKN 1zj8A 141 :ENVPEIWRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29867 # 1t6cA.88.96 read from T0547.t2k.many.frag # found chain 1t6cA in training set T0547 88 :NQYPGFVKN 1t6cA 94 :KNAEEFLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=29868 # 1w96A.88.141 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 88 :NQYPGFVKN 1w96A 154 :SENPLLPEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29869 # 1floA.88.82 read from T0547.t2k.many.frag # found chain 1floA in template set T0547 88 :NQYPGFVKN 1floA 84 :QKATILEAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29870 # 1dp4A.88.87 read from T0547.t2k.many.frag # found chain 1dp4A in template set T0547 88 :NQYPGFVKN 1dp4A 88 :YSAAPVGRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29871 # 1xrjA.88.30 read from T0547.t2k.many.frag # found chain 1xrjA in template set T0547 88 :NQYPGFVKN 1xrjA 31 :SGKSSVCAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29872 # 1szwA.88.74 read from T0547.t2k.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)Q89 (1szwA)N54 because P (beta_P) conformation "forbidden" or filtered. T0547 88 :N 1szwA 53 :C T0547 90 :YPGFVKN 1szwA 55 :TRFVADA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29874 # 1vbkA.88.55 read from T0547.t2k.many.frag # found chain 1vbkA in template set T0547 88 :NQYPGFVKN 1vbkA 56 :NSPKEAANV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29875 # 1sauA.88.67 read from T0547.t2k.many.frag # found chain 1sauA in training set T0547 88 :NQYPGFVKN 1sauA 68 :PPVRMLVKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29876 # 1hqsA.88.73 read from T0547.t2k.many.frag # found chain 1hqsA in training set T0547 88 :NQYPGFVKN 1hqsA 74 :WLPAETLDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29877 # 1ynfA.88.222 read from T0547.t2k.many.frag # found chain 1ynfA in template set T0547 88 :NQYPGFVKN 1ynfA 212 :RQTREASEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29878 1g60A expands to /projects/compbio/data/pdb/1g60.pdb.gz 1g60A:Skipped atom 47, because occupancy 0.420 <= existing 0.580 in 1g60A Skipped atom 49, because occupancy 0.420 <= existing 0.580 in 1g60A Skipped atom 51, because occupancy 0.420 <= existing 0.580 in 1g60A Skipped atom 53, because occupancy 0.420 <= existing 0.580 in 1g60A Skipped atom 55, because occupancy 0.420 <= existing 0.580 in 1g60A Skipped atom 389, because occupancy 0.230 <= existing 0.770 in 1g60A Skipped atom 391, because occupancy 0.230 <= existing 0.770 in 1g60A Skipped atom 393, because occupancy 0.230 <= existing 0.770 in 1g60A Skipped atom 395, because occupancy 0.230 <= existing 0.770 in 1g60A Skipped atom 401, because occupancy 0.390 <= existing 0.610 in 1g60A Skipped atom 403, because occupancy 0.390 <= existing 0.610 in 1g60A Skipped atom 405, because occupancy 0.390 <= existing 0.610 in 1g60A Skipped atom 407, because occupancy 0.390 <= existing 0.610 in 1g60A Skipped atom 409, because occupancy 0.390 <= existing 0.610 in 1g60A Skipped atom 823, because occupancy 0.350 <= existing 0.650 in 1g60A Skipped atom 825, because occupancy 0.350 <= existing 0.650 in 1g60A Skipped atom 827, because occupancy 0.350 <= existing 0.650 in 1g60A Skipped atom 829, because occupancy 0.350 <= existing 0.650 in 1g60A Skipped atom 908, because occupancy 0.440 <= existing 0.560 in 1g60A Skipped atom 910, because occupancy 0.440 <= existing 0.560 in 1g60A Skipped atom 1049, because occupancy 0.360 <= existing 0.640 in 1g60A Skipped atom 1051, because occupancy 0.360 <= existing 0.640 in 1g60A Skipped atom 1053, because occupancy 0.360 <= existing 0.640 in 1g60A Skipped atom 1055, because occupancy 0.360 <= existing 0.640 in 1g60A Skipped atom 1057, because occupancy 0.360 <= existing 0.640 in 1g60A Skipped atom 1312, because occupancy 0.420 <= existing 0.580 in 1g60A Skipped atom 1314, because occupancy 0.420 <= existing 0.580 in 1g60A Skipped atom 1316, because occupancy 0.420 <= existing 0.580 in 1g60A Skipped atom 1318, because occupancy 0.420 <= existing 0.580 in 1g60A Skipped atom 1320, because occupancy 0.420 <= existing 0.580 in 1g60A Skipped atom 1533, because occupancy 0.460 <= existing 0.540 in 1g60A Skipped atom 1535, because occupancy 0.460 <= existing 0.540 in 1g60A Skipped atom 1537, because occupancy 0.460 <= existing 0.540 in 1g60A Skipped atom 1539, because occupancy 0.460 <= existing 0.540 in 1g60A Skipped atom 1541, because occupancy 0.460 <= existing 0.540 in 1g60A Skipped atom 1543, because occupancy 0.460 <= existing 0.540 in 1g60A Skipped atom 1545, because occupancy 0.460 <= existing 0.540 in 1g60A Skipped atom 1839, because occupancy 0.410 <= existing 0.590 in 1g60A Skipped atom 1841, because occupancy 0.410 <= existing 0.590 in 1g60A Skipped atom 1843, because occupancy 0.410 <= existing 0.590 in 1g60A Skipped atom 1845, because occupancy 0.410 <= existing 0.590 in 1g60A # 1g60A.88.76 read from T0547.t2k.many.frag # adding 1g60A to template set # found chain 1g60A in template set T0547 88 :NQYPGFVKN 1g60A 77 :FNCAFICQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29879 # 1zhvA.88.108 read from T0547.t2k.many.frag # found chain 1zhvA in training set T0547 88 :NQYPGFVKN 1zhvA 110 :NDLEKTADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29880 # 1cy5A.88.19 read from T0547.t2k.many.frag # found chain 1cy5A in training set Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE in next template residue (1cy5A)K21 Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1cy5A)K21 T0547 90 :YPGFVKN 1cy5A 22 :TSYIMDH Number of specific fragments extracted= 1 number of extra gaps= 1 total=29881 1zp4A expands to /projects/compbio/data/pdb/1zp4.pdb.gz 1zp4A:# 1zp4A.88.67 read from T0547.t2k.many.frag # adding 1zp4A to template set # found chain 1zp4A in template set Warning: unaligning (T0547)Q89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zp4A)R69 T0547 90 :YPGFVKN 1zp4A 70 :THSIIKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29882 # 1z9hA.88.22 read from T0547.t2k.many.frag # found chain 1z9hA in template set Warning: unaligning (T0547)N88 (1z9hA)C110 because P (beta_P) conformation "forbidden" or filtered. T0547 89 :QYPGFVKN 1z9hA 111 :PFCSKVRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29883 # 1izcA.88.49 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 88 :NQYPGFVKN 1izcA 50 :IPSTFVTKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29884 # 1knwA.89.56 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 89 :QYPGFVKNL 1knwA 57 :SNIHILRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29885 # 1n0qA.89.45 read from T0547.t2k.many.frag # found chain 1n0qA in training set Warning: unaligning (T0547)Q89 (1n0qA)G46 because L (left) conformation "forbidden" or filtered. T0547 90 :YPGFVKNL 1n0qA 47 :HLEVVKLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29886 # 7odcA.89.71 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 89 :QYPGFVKNL 7odcA 72 :DSRAIVSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29887 # 1yq2A.89.372 read from T0547.t2k.many.frag # found chain 1yq2A in template set T0547 89 :QYPGFVKNL 1yq2A 372 :PHPRLLDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29888 # 1z7aA.89.107 read from T0547.t2k.many.frag # found chain 1z7aA in training set T0547 89 :QYPGFVKNL 1z7aA 108 :RNPEVIRAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29889 # 1l7dA.89.17 read from T0547.t2k.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)Q89 (1l7dA)I18 because Y (epsilon') conformation "forbidden" or filtered. T0547 90 :YPGFVKNL 1l7dA 19 :SPEVVKKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29890 # 1ox0A.89.213 read from T0547.t2k.many.frag # found chain 1ox0A in training set T0547 89 :QYPGFVKNL 1ox0A 195 :ITPFAIAGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29891 # 1ryoA.89.43 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 90 :YPGFVKNL 1ryoA 45 :YLDCIRAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29892 1ru3A expands to /projects/compbio/data/pdb/1ru3.pdb.gz 1ru3A:# 1ru3A.89.80 read from T0547.t2k.many.frag # adding 1ru3A to template set # found chain 1ru3A in template set T0547 89 :QYPGFVKNL 1ru3A 81 :DMVPILNRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29893 # 1vkyA.89.190 read from T0547.t2k.many.frag # found chain 1vkyA in template set T0547 89 :QYPGFVKNL 1vkyA 179 :FTPELIEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29894 # 1zj8A.89.152 read from T0547.t2k.many.frag # found chain 1zj8A in template set T0547 89 :QYPGFVKNL 1zj8A 142 :NVPEIWRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29895 # 1zp4A.89.68 read from T0547.t2k.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)Q89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zp4A)R69 T0547 90 :YPGFVKNL 1zp4A 70 :THSIIKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29896 # 1t6cA.89.97 read from T0547.t2k.many.frag # found chain 1t6cA in training set T0547 89 :QYPGFVKNL 1t6cA 95 :NAEEFLERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29897 1rqlA expands to /projects/compbio/data/pdb/1rql.pdb.gz 1rqlA:# 1rqlA.89.106 read from T0547.t2k.many.frag # adding 1rqlA to template set # found chain 1rqlA in template set T0547 89 :QYPGFVKNL 1rqlA 107 :AVKEVIASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29898 # 1yacA.89.91 read from T0547.t2k.many.frag # found chain 1yacA in training set T0547 89 :QYPGFVKNL 1yacA 92 :DNEDFVKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29899 # 1dp4A.89.88 read from T0547.t2k.many.frag # found chain 1dp4A in template set T0547 89 :QYPGFVKNL 1dp4A 89 :SAAPVGRFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29900 # 1v5vA.89.159 read from T0547.t2k.many.frag # found chain 1v5vA in training set T0547 89 :QYPGFVKNL 1v5vA 160 :KARDLAKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29901 # 2fqxA.89.72 read from T0547.t2k.many.frag # found chain 2fqxA in training set T0547 89 :QYPGFVKNL 2fqxA 88 :LVEAVIETS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29902 # 1szwA.89.75 read from T0547.t2k.many.frag # found chain 1szwA in template set T0547 89 :QYPGFVKNL 1szwA 54 :NTRFVADAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29903 # 1w96A.89.142 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 89 :QYPGFVKNL 1w96A 155 :ENPLLPEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29904 # 1cy5A.89.20 read from T0547.t2k.many.frag # found chain 1cy5A in training set Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1cy5A)K21 T0547 90 :YPGFVKNL 1cy5A 22 :TSYIMDHM Number of specific fragments extracted= 1 number of extra gaps= 1 total=29905 # 1r0mA.89.174 read from T0547.t2k.many.frag # found chain 1r0mA in training set T0547 89 :QYPGFVKNL 1r0mA 175 :WDVQPVRAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29906 # 1jftA.89.124 read from T0547.t2k.many.frag # found chain 1jftA in template set T0547 89 :QYPGFVKNL 1jftA 126 :YPEPLLAML Number of specific fragments extracted= 1 number of extra gaps= 0 total=29907 # 1g60A.89.77 read from T0547.t2k.many.frag # found chain 1g60A in template set T0547 89 :QYPGFVKNL 1g60A 78 :NCAFICQYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29908 # 1ynfA.89.223 read from T0547.t2k.many.frag # found chain 1ynfA in template set Warning: unaligning (T0547)Q89 (1ynfA)Q213 because E (beta_S) conformation "forbidden" or filtered. T0547 90 :YPGFVKNL 1ynfA 214 :TREASEAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29909 # 1izcA.89.50 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 89 :QYPGFVKNL 1izcA 51 :PSTFVTKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29910 # 1yxyA.89.36 read from T0547.t2k.many.frag # found chain 1yxyA in training set T0547 89 :QYPGFVKNL 1yxyA 37 :IMPLMAKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29911 # 1hqsA.89.74 read from T0547.t2k.many.frag # found chain 1hqsA in training set T0547 89 :QYPGFVKNL 1hqsA 75 :LPAETLDVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29912 # 1xrjA.89.31 read from T0547.t2k.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)Q89 (1xrjA)G32 because T (delta_L) conformation "forbidden" or filtered. T0547 90 :YPGFVKNL 1xrjA 33 :KSSVCAKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29913 # 1floA.89.83 read from T0547.t2k.many.frag # found chain 1floA in template set T0547 89 :QYPGFVKNL 1floA 85 :KATILEASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29914 # 1knwA.90.57 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 90 :YPGFVKNLV 1knwA 58 :NIHILRLMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29915 # 7odcA.90.72 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 90 :YPGFVKNLV 7odcA 73 :SRAIVSTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29916 # 1n0qA.90.46 read from T0547.t2k.many.frag # found chain 1n0qA in training set T0547 90 :YPGFVKNLV 1n0qA 47 :HLEVVKLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29917 # 1z7aA.90.108 read from T0547.t2k.many.frag # found chain 1z7aA in training set T0547 90 :YPGFVKNLV 1z7aA 109 :NPEVIRAMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29918 # 1yq2A.90.373 read from T0547.t2k.many.frag # found chain 1yq2A in template set T0547 90 :YPGFVKNLV 1yq2A 373 :HPRLLDLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29919 # 1l7dA.90.18 read from T0547.t2k.many.frag # found chain 1l7dA in template set T0547 90 :YPGFVKNLV 1l7dA 19 :SPEVVKKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29920 # 1ox0A.90.214 read from T0547.t2k.many.frag # found chain 1ox0A in training set T0547 90 :YPGFVKNLV 1ox0A 196 :TPFAIAGFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29921 # 1ru3A.90.81 read from T0547.t2k.many.frag # found chain 1ru3A in template set T0547 90 :YPGFVKNLV 1ru3A 82 :MVPILNRMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29922 # 1rqlA.90.107 read from T0547.t2k.many.frag # found chain 1rqlA in template set T0547 90 :YPGFVKNLV 1rqlA 108 :VKEVIASLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29923 # 1ryoA.90.44 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 90 :YPGFVKNLV 1ryoA 45 :YLDCIRAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29924 # 1vkyA.90.191 read from T0547.t2k.many.frag # found chain 1vkyA in template set T0547 90 :YPGFVKNLV 1vkyA 180 :TPELIEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29925 # 1cy5A.90.21 read from T0547.t2k.many.frag # found chain 1cy5A in training set T0547 90 :YPGFVKNLV 1cy5A 22 :TSYIMDHMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29926 # 1zp4A.90.69 read from T0547.t2k.many.frag # found chain 1zp4A in template set T0547 90 :YPGFVKNLV 1zp4A 70 :THSIIKGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29927 # 1szwA.90.76 read from T0547.t2k.many.frag # found chain 1szwA in template set T0547 90 :YPGFVKNLV 1szwA 55 :TRFVADALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29928 # 1yacA.90.92 read from T0547.t2k.many.frag # found chain 1yacA in training set T0547 90 :YPGFVKNLV 1yacA 93 :NEDFVKAVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29929 # 1yxyA.90.37 read from T0547.t2k.many.frag # found chain 1yxyA in training set T0547 90 :YPGFVKNLV 1yxyA 38 :MPLMAKAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29930 # 1zj8A.90.153 read from T0547.t2k.many.frag # found chain 1zj8A in template set T0547 90 :YPGFVKNLV 1zj8A 143 :VPEIWRRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29931 # 1ynfA.90.224 read from T0547.t2k.many.frag # found chain 1ynfA in template set T0547 90 :YPGFVKNLV 1ynfA 214 :TREASEAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29932 # 1izcA.90.51 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 90 :YPGFVKNLV 1izcA 52 :STFVTKVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29933 # 2b8eA.90.147 read from T0547.t2k.many.frag # found chain 2b8eA in template set T0547 90 :YPGFVKNLV 2b8eA 554 :AKPAVQELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29934 # 1zhvA.90.110 read from T0547.t2k.many.frag # found chain 1zhvA in training set T0547 90 :YPGFVKNLV 1zhvA 112 :LEKTADLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29935 # 1t6cA.90.98 read from T0547.t2k.many.frag # found chain 1t6cA in training set T0547 90 :YPGFVKNLV 1t6cA 96 :AEEFLERVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29936 # 1hqsA.90.75 read from T0547.t2k.many.frag # found chain 1hqsA in training set T0547 90 :YPGFVKNLV 1hqsA 76 :PAETLDVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29937 # 1jftA.90.125 read from T0547.t2k.many.frag # found chain 1jftA in template set T0547 90 :YPGFVKNLV 1jftA 127 :PEPLLAMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29938 # 1w96A.90.143 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 90 :YPGFVKNLV 1w96A 156 :NPLLPEKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29939 # 1dp4A.90.89 read from T0547.t2k.many.frag # found chain 1dp4A in template set T0547 90 :YPGFVKNLV 1dp4A 90 :AAPVGRFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29940 # 1vkfA.90.44 read from T0547.t2k.many.frag # found chain 1vkfA in training set T0547 90 :YPGFVKNLV 1vkfA 33 :LKFHLKILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29941 # 1dpgA.90.122 read from T0547.t2k.many.frag # found chain 1dpgA in template set T0547 90 :YPGFVKNLV 1dpgA 123 :FGTIAKYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29942 # 1g60A.90.78 read from T0547.t2k.many.frag # found chain 1g60A in template set T0547 90 :YPGFVKNLV 1g60A 79 :CAFICQYLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29943 # 1bu8A.90.87 read from T0547.t2k.many.frag # found chain 1bu8A in training set T0547 90 :YPGFVKNLV 1bu8A 86 :LLDMCKKMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29944 # 1knwA.91.58 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 91 :PGFVKNLVK 1knwA 59 :IHILRLMRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29945 # 1n0qA.91.47 read from T0547.t2k.many.frag # found chain 1n0qA in training set T0547 91 :PGFVKNLVK 1n0qA 48 :LEVVKLLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29946 # 1z7aA.91.109 read from T0547.t2k.many.frag # found chain 1z7aA in training set T0547 91 :PGFVKNLVK 1z7aA 110 :PEVIRAMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29947 # 1l7dA.91.19 read from T0547.t2k.many.frag # found chain 1l7dA in template set T0547 91 :PGFVKNLVK 1l7dA 20 :PEVVKKLVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29948 # 1rqlA.91.108 read from T0547.t2k.many.frag # found chain 1rqlA in template set T0547 91 :PGFVKNLVK 1rqlA 109 :KEVIASLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29949 # 1yq2A.91.374 read from T0547.t2k.many.frag # found chain 1yq2A in template set T0547 91 :PGFVKNLVK 1yq2A 374 :PRLLDLADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29950 # 7odcA.91.73 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 91 :PGFVKNLVK 7odcA 74 :RAIVSTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29951 # 1ru3A.91.82 read from T0547.t2k.many.frag # found chain 1ru3A in template set T0547 91 :PGFVKNLVK 1ru3A 83 :VPILNRMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29952 # 1ox0A.91.215 read from T0547.t2k.many.frag # found chain 1ox0A in training set T0547 91 :PGFVKNLVK 1ox0A 197 :PFAIAGFQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29953 # 1yxyA.91.38 read from T0547.t2k.many.frag # found chain 1yxyA in training set T0547 91 :PGFVKNLVK 1yxyA 39 :PLMAKAAQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29954 # 1cy5A.91.22 read from T0547.t2k.many.frag # found chain 1cy5A in training set T0547 91 :PGFVKNLVK 1cy5A 23 :SYIMDHMIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29955 # 1ryoA.91.45 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 91 :PGFVKNLVK 1ryoA 46 :LDCIRAIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29956 # 2b8eA.91.148 read from T0547.t2k.many.frag # found chain 2b8eA in template set T0547 91 :PGFVKNLVK 2b8eA 555 :KPAVQELKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29957 # 1szwA.91.77 read from T0547.t2k.many.frag # found chain 1szwA in template set T0547 91 :PGFVKNLVK 1szwA 56 :RFVADALAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29958 # 1zp4A.91.70 read from T0547.t2k.many.frag # found chain 1zp4A in template set T0547 91 :PGFVKNLVK 1zp4A 71 :HSIIKGIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29959 # 1pu6A.91.4 read from T0547.t2k.many.frag # found chain 1pu6A in training set T0547 91 :PGFVKNLVK 1pu6A 5 :FEILKALKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29960 # 1vkyA.91.192 read from T0547.t2k.many.frag # found chain 1vkyA in template set T0547 91 :PGFVKNLVK 1vkyA 181 :PELIEKLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29961 # 1ynfA.91.225 read from T0547.t2k.many.frag # found chain 1ynfA in template set T0547 91 :PGFVKNLVK 1ynfA 215 :REASEAVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29962 # 1zj8A.91.154 read from T0547.t2k.many.frag # found chain 1zj8A in template set T0547 91 :PGFVKNLVK 1zj8A 144 :PEIWRRLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29963 # 1izcA.91.52 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 91 :PGFVKNLVK 1izcA 53 :TFVTKVLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29964 # 1yacA.91.93 read from T0547.t2k.many.frag # found chain 1yacA in training set T0547 91 :PGFVKNLVK 1yacA 94 :EDFVKAVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29965 # 1dpgA.91.123 read from T0547.t2k.many.frag # found chain 1dpgA in template set T0547 91 :PGFVKNLVK 1dpgA 124 :GTIAKYLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29966 # 1t6cA.91.99 read from T0547.t2k.many.frag # found chain 1t6cA in training set T0547 91 :PGFVKNLVK 1t6cA 97 :EEFLERVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29967 # 1vkfA.91.45 read from T0547.t2k.many.frag # found chain 1vkfA in training set T0547 91 :PGFVKNLVK 1vkfA 34 :KFHLKILKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29968 # 1w96A.91.144 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 91 :PGFVKNLVK 1w96A 157 :PLLPEKLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29969 1nmoA expands to /projects/compbio/data/pdb/1nmo.pdb.gz 1nmoA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1nmoA.91.45 read from T0547.t2k.many.frag # adding 1nmoA to template set # found chain 1nmoA in template set T0547 91 :PGFVKNLVK 1nmoA 46 :QALLDEAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29970 # 1g60A.91.79 read from T0547.t2k.many.frag # found chain 1g60A in template set T0547 91 :PGFVKNLVK 1g60A 80 :AFICQYLVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29971 # 1bu8A.91.88 read from T0547.t2k.many.frag # found chain 1bu8A in training set T0547 91 :PGFVKNLVK 1bu8A 87 :LDMCKKMFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29972 # 1dp4A.91.90 read from T0547.t2k.many.frag # found chain 1dp4A in template set T0547 91 :PGFVKNLVK 1dp4A 91 :APVGRFTAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29973 # 1eyeA.91.69 read from T0547.t2k.many.frag # found chain 1eyeA in template set T0547 91 :PGFVKNLVK 1eyeA 70 :IPVVKELAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29974 # 1knwA.92.59 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 92 :GFVKNLVKL 1knwA 60 :HILRLMREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29975 # 7odcA.92.74 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 92 :GFVKNLVKL 7odcA 75 :AIVSTLAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29976 # 1n0qA.92.48 read from T0547.t2k.many.frag # found chain 1n0qA in training set T0547 92 :GFVKNLVKL 1n0qA 49 :EVVKLLLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29977 # 1z7aA.92.110 read from T0547.t2k.many.frag # found chain 1z7aA in training set T0547 92 :GFVKNLVKL 1z7aA 111 :EVIRAMVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29978 # 1rqlA.92.109 read from T0547.t2k.many.frag # found chain 1rqlA in template set T0547 92 :GFVKNLVKL 1rqlA 110 :EVIASLRER Number of specific fragments extracted= 1 number of extra gaps= 0 total=29979 # 1yq2A.92.375 read from T0547.t2k.many.frag # found chain 1yq2A in template set T0547 92 :GFVKNLVKL 1yq2A 375 :RLLDLADEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29980 # 1l7dA.92.20 read from T0547.t2k.many.frag # found chain 1l7dA in template set T0547 92 :GFVKNLVKL 1l7dA 21 :EVVKKLVGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29981 # 1ox0A.92.216 read from T0547.t2k.many.frag # found chain 1ox0A in training set T0547 92 :GFVKNLVKL 1ox0A 198 :FAIAGFQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29982 # 1ru3A.92.83 read from T0547.t2k.many.frag # found chain 1ru3A in template set T0547 92 :GFVKNLVKL 1ru3A 84 :PILNRMRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29983 # 1pu6A.92.5 read from T0547.t2k.many.frag # found chain 1pu6A in training set T0547 92 :GFVKNLVKL 1pu6A 6 :EILKALKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29984 # 1vkyA.92.193 read from T0547.t2k.many.frag # found chain 1vkyA in template set T0547 92 :GFVKNLVKL 1vkyA 182 :ELIEKLKKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29985 # 1g8mA.92.19 read from T0547.t2k.many.frag # found chain 1g8mA in training set T0547 92 :GFVKNLVKL 1g8mA 20 :EFARSLNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29986 # 1yxyA.92.39 read from T0547.t2k.many.frag # found chain 1yxyA in training set T0547 92 :GFVKNLVKL 1yxyA 40 :LMAKAAQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29987 # 2b8eA.92.149 read from T0547.t2k.many.frag # found chain 2b8eA in template set T0547 92 :GFVKNLVKL 2b8eA 556 :PAVQELKRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29988 # 1ryoA.92.46 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)L100 (1ryoA)N55 because L (left) conformation "forbidden" or filtered. T0547 92 :GFVKNLVK 1ryoA 47 :DCIRAIAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29989 # 1cy5A.92.23 read from T0547.t2k.many.frag # found chain 1cy5A in training set T0547 92 :GFVKNLVKL 1cy5A 24 :YIMDHMISD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29990 # 1vkfA.92.46 read from T0547.t2k.many.frag # found chain 1vkfA in training set T0547 92 :GFVKNLVKL 1vkfA 35 :FHLKILKDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29991 # 1yacA.92.94 read from T0547.t2k.many.frag # found chain 1yacA in training set T0547 92 :GFVKNLVKL 1yacA 95 :DFVKAVKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29992 # 1zj8A.92.155 read from T0547.t2k.many.frag # found chain 1zj8A in template set T0547 92 :GFVKNLVKL 1zj8A 145 :EIWRRLDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29993 # 1zhvA.92.112 read from T0547.t2k.many.frag # found chain 1zhvA in training set T0547 92 :GFVKNLVKL 1zhvA 114 :KTADLLANA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29994 # 1j24A.92.16 read from T0547.t2k.many.frag # found chain 1j24A in training set T0547 92 :GFVKNLVKL 1j24A 17 :EVVKRLKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29995 # 1q0rA.92.41 read from T0547.t2k.many.frag # found chain 1q0rA in training set T0547 92 :GFVKNLVKL 1q0rA 42 :EFARRLADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29996 # 1zp4A.92.71 read from T0547.t2k.many.frag # found chain 1zp4A in template set T0547 92 :GFVKNLVKL 1zp4A 72 :SIIKGIKDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29997 # 1c1dA.92.123 read from T0547.t2k.many.frag # found chain 1c1dA in training set T0547 92 :GFVKNLVKL 1c1dA 124 :ADMDTLNDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29998 # 1w96A.92.145 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 92 :GFVKNLVKL 1w96A 158 :LLPEKLSQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29999 # 1q7zA.92.129 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 92 :GFVKNLVKL 1q7zA 130 :ETVEIMVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30000 # 1jftA.92.127 read from T0547.t2k.many.frag # found chain 1jftA in template set T0547 92 :GFVKNLVKL 1jftA 129 :PLLAMLEEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30001 # 1dpgA.92.124 read from T0547.t2k.many.frag # found chain 1dpgA in template set T0547 92 :GFVKNLVKL 1dpgA 125 :TIAKYLKSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30002 # 1szwA.92.78 read from T0547.t2k.many.frag # found chain 1szwA in template set T0547 92 :GFVKNLVKL 1szwA 57 :FVADALAKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30003 # 1ynfA.92.226 read from T0547.t2k.many.frag # found chain 1ynfA in template set T0547 92 :GFVKNLVKL 1ynfA 216 :EASEAVARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30004 # 1n0qA.93.49 read from T0547.t2k.many.frag # found chain 1n0qA in training set T0547 93 :FVKNLVKLG 1n0qA 50 :VVKLLLEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30005 # 1z7aA.93.111 read from T0547.t2k.many.frag # found chain 1z7aA in training set T0547 93 :FVKNLVKLG 1z7aA 112 :VIRAMVADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30006 # 1rqlA.93.110 read from T0547.t2k.many.frag # found chain 1rqlA in template set T0547 93 :FVKNLVKLG 1rqlA 111 :VIASLRERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30007 # 7odcA.93.75 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 93 :FVKNLVKLG 7odcA 76 :IVSTLAAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30008 # 1knwA.93.60 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 93 :FVKNLVKLG 1knwA 61 :ILRLMREQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30009 # 1l7dA.93.21 read from T0547.t2k.many.frag # found chain 1l7dA in template set T0547 93 :FVKNLVKLG 1l7dA 22 :VVKKLVGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30010 # 1ru3A.93.84 read from T0547.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)G101 (1ru3A)I93 because P (beta_P) conformation "forbidden" or filtered. T0547 93 :FVKNLVKL 1ru3A 85 :ILNRMRAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=30011 # 1ox0A.93.217 read from T0547.t2k.many.frag # found chain 1ox0A in training set T0547 93 :FVKNLVKLG 1ox0A 199 :AIAGFQALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30012 # 1yq2A.93.376 read from T0547.t2k.many.frag # found chain 1yq2A in template set T0547 93 :FVKNLVKLG 1yq2A 376 :LLDLADEMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30013 # 2b8eA.93.150 read from T0547.t2k.many.frag # found chain 2b8eA in template set T0547 93 :FVKNLVKLG 2b8eA 557 :AVQELKRMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30014 # 1pu6A.93.6 read from T0547.t2k.many.frag # found chain 1pu6A in training set T0547 93 :FVKNLVKLG 1pu6A 7 :ILKALKSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30015 # 1vkfA.93.47 read from T0547.t2k.many.frag # found chain 1vkfA in training set T0547 93 :FVKNLVKLG 1vkfA 36 :HLKILKDRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30016 # 1vkyA.93.194 read from T0547.t2k.many.frag # found chain 1vkyA in template set T0547 93 :FVKNLVKLG 1vkyA 183 :LIEKLKKKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30017 # 1g8mA.93.20 read from T0547.t2k.many.frag # found chain 1g8mA in training set T0547 93 :FVKNLVKLG 1g8mA 21 :FARSLNALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30018 # 1su8A.93.171 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 93 :FVKNLVKLG 1su8A 172 :RVKVLSAHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30019 # 1j24A.93.17 read from T0547.t2k.many.frag # found chain 1j24A in training set T0547 93 :FVKNLVKLG 1j24A 18 :VVKRLKLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30020 # 1cy5A.93.24 read from T0547.t2k.many.frag # found chain 1cy5A in training set T0547 93 :FVKNLVKLG 1cy5A 25 :IMDHMISDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30021 # 1yxyA.93.40 read from T0547.t2k.many.frag # found chain 1yxyA in training set T0547 93 :FVKNLVKLG 1yxyA 41 :MAKAAQEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30022 # 1zhvA.93.113 read from T0547.t2k.many.frag # found chain 1zhvA in training set T0547 93 :FVKNLVKLG 1zhvA 115 :TADLLANAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30023 # 1c1dA.93.124 read from T0547.t2k.many.frag # found chain 1c1dA in training set T0547 93 :FVKNLVKLG 1c1dA 125 :DMDTLNDTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30024 # 1szwA.93.79 read from T0547.t2k.many.frag # found chain 1szwA in template set T0547 93 :FVKNLVKLG 1szwA 58 :VADALAKFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30025 # 1q0rA.93.42 read from T0547.t2k.many.frag # found chain 1q0rA in training set T0547 93 :FVKNLVKLG 1q0rA 43 :FARRLADGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30026 # 1dpgA.93.125 read from T0547.t2k.many.frag # found chain 1dpgA in template set T0547 93 :FVKNLVKLG 1dpgA 126 :IAKYLKSEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30027 # 1ynfA.93.227 read from T0547.t2k.many.frag # found chain 1ynfA in template set T0547 93 :FVKNLVKLG 1ynfA 217 :ASEAVARLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30028 # 1q7zA.93.130 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 93 :FVKNLVKLG 1q7zA 131 :TVEIMVEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30029 # 1b8oA.93.204 read from T0547.t2k.many.frag # found chain 1b8oA in training set T0547 93 :FVKNLVKLG 1b8oA 205 :ECRLLRNLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30030 # 1nmoA.93.47 read from T0547.t2k.many.frag # found chain 1nmoA in template set T0547 93 :FVKNLVKLG 1nmoA 48 :LLDEAVRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30031 2d28C expands to /projects/compbio/data/pdb/2d28.pdb.gz 2d28C:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2d28C.93.9 read from T0547.t2k.many.frag # adding 2d28C to template set # found chain 2d28C in template set T0547 93 :FVKNLVKLG 2d28C 10 :IVEALLERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30032 # 1w96A.93.146 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 93 :FVKNLVKLG 1w96A 159 :LPEKLSQSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30033 # 1y88A.93.151 read from T0547.t2k.many.frag # found chain 1y88A in template set T0547 93 :FVKNLVKLG 1y88A 139 :VLDELVRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30034 # 1n0qA.94.50 read from T0547.t2k.many.frag # found chain 1n0qA in training set T0547 94 :VKNLVKLGK 1n0qA 51 :VKLLLEAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30035 # 1ru3A.94.85 read from T0547.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)G101 (1ru3A)I93 because P (beta_P) conformation "forbidden" or filtered. T0547 94 :VKNLVKL 1ru3A 86 :LNRMRAQ T0547 102 :K 1ru3A 94 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=30037 # 1rqlA.94.111 read from T0547.t2k.many.frag # found chain 1rqlA in template set T0547 94 :VKNLVKLGK 1rqlA 112 :IASLRERGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30038 # 1ox0A.94.218 read from T0547.t2k.many.frag # found chain 1ox0A in training set T0547 94 :VKNLVKLGK 1ox0A 200 :IAGFQALTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30039 # 1pu6A.94.7 read from T0547.t2k.many.frag # found chain 1pu6A in training set T0547 94 :VKNLVKLGK 1pu6A 8 :LKALKSLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30040 # 1b8oA.94.205 read from T0547.t2k.many.frag # found chain 1b8oA in training set T0547 94 :VKNLVKLGK 1b8oA 206 :CRLLRNLGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30041 1vjrA expands to /projects/compbio/data/pdb/1vjr.pdb.gz 1vjrA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 172, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 173, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 177, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 178, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 180, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 181, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 183, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 184, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 186, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 187, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 237, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 241, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 243, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 245, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 247, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 249, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 271, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 275, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 277, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 279, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 281, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 283, because occupancy 0.500 <= existing 0.500 in 1vjrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1601, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1605, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1607, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1609, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1611, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1613, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1616, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1620, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1622, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1624, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1626, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1628, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1630, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1632, because occupancy 0.500 <= existing 0.500 in 1vjrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1868, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1872, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1874, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1876, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1878, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1880, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1912, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1914, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1916, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1918, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1920, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1922, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1930, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1934, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1936, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1938, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1940, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1942, because occupancy 0.500 <= existing 0.500 in 1vjrA # 1vjrA.94.66 read from T0547.t2k.many.frag # adding 1vjrA to template set # found chain 1vjrA in template set T0547 94 :VKNLVKLGK 1vjrA 55 :VRKLRNMGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30042 # 1q7zA.94.131 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 94 :VKNLVKLGK 1q7zA 132 :VEIMVEEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30043 # 1yxyA.94.41 read from T0547.t2k.many.frag # found chain 1yxyA in training set T0547 94 :VKNLVKLGK 1yxyA 42 :AKAAQEAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30044 # 1vkyA.94.195 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)K102 (1vkyA)V192 because P (beta_P) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1vkyA 184 :IEKLKKKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=30045 1vjjA expands to /projects/compbio/data/pdb/1vjj.pdb.gz 1vjjA:Skipped atom 2461, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2463, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2465, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2467, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2469, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2471, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2473, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2475, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2477, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2479, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2481, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2483, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2485, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2487, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2489, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2491, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2493, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2495, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2497, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2499, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2501, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2503, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2505, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2507, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2509, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2511, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2513, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2515, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2517, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2519, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2521, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2523, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2525, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2527, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2529, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2531, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2533, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2535, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2537, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2539, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2541, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 3272, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 3276, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 3278, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 3280, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 3282, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 3284, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 3286, because occupancy 0.500 <= existing 0.500 in 1vjjA # 1vjjA.94.255 read from T0547.t2k.many.frag # adding 1vjjA to template set # found chain 1vjjA in template set Warning: unaligning (T0547)K102 (1vjjA)L264 because L (left) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1vjjA 256 :LKNWKKSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=30046 # 1l7dA.94.22 read from T0547.t2k.many.frag # found chain 1l7dA in template set T0547 94 :VKNLVKLGK 1l7dA 23 :VKKLVGLGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30047 # 1z7aA.94.112 read from T0547.t2k.many.frag # found chain 1z7aA in training set T0547 94 :VKNLVKLGK 1z7aA 113 :IRAMVADGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30048 1va6A expands to /projects/compbio/data/pdb/1va6.pdb.gz 1va6A:# 1va6A.94.432 read from T0547.t2k.many.frag # adding 1va6A to template set # found chain 1va6A in template set T0547 94 :VKNLVKLGK 1va6A 433 :CDELVACFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30049 # 1tzvA.94.61 read from T0547.t2k.many.frag # found chain 1tzvA in training set T0547 94 :VKNLVKLGK 1tzvA 62 :DDLISRYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30050 # 1w96A.94.147 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 94 :VKNLVKLGK 1w96A 160 :PEKLSQSKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30051 # 1sbxA.94.71 read from T0547.t2k.many.frag # found chain 1sbxA in training set T0547 94 :VKNLVKLGK 1sbxA 158 :LEILKVMGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30052 # 1vkfA.94.48 read from T0547.t2k.many.frag # found chain 1vkfA in training set T0547 94 :VKNLVKLGK 1vkfA 37 :LKILKDRGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30053 # 1g8mA.94.21 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)K102 (1g8mA)L30 because P (beta_P) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1g8mA 22 :ARSLNALG Number of specific fragments extracted= 1 number of extra gaps= 1 total=30054 # 7odcA.94.76 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 94 :VKNLVKLGK 7odcA 77 :VSTLAAIGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30055 # 1yq2A.94.377 read from T0547.t2k.many.frag # found chain 1yq2A in template set T0547 94 :VKNLVKLGK 1yq2A 377 :LDLADEMGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30056 # 1c1dA.94.125 read from T0547.t2k.many.frag # found chain 1c1dA in training set T0547 94 :VKNLVKLGK 1c1dA 126 :MDTLNDTTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30057 # 1knwA.94.61 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 94 :VKNLVKLGK 1knwA 62 :LRLMREQGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30058 # 2bmfA.94.60 read from T0547.t2k.many.frag # found chain 2bmfA in template set Warning: unaligning (T0547)G101 (2bmfA)L235 because G (3-10) conformation "forbidden" or filtered. T0547 94 :VKNLVKL 2bmfA 228 :AAEMEEA T0547 102 :K 2bmfA 236 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=30060 1ei6A expands to /projects/compbio/data/pdb/1ei6.pdb.gz 1ei6A:# 1ei6A.94.30 read from T0547.t2k.many.frag # adding 1ei6A to template set # found chain 1ei6A in template set Warning: unaligning (T0547)K102 (1ei6A)Q40 because G (3-10) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1ei6A 32 :INQAIQAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=30061 # 1o2dA.94.60 read from T0547.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0547)K102 (1o2dA)E57 because L (left) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1o2dA 49 :LKKLLDET Number of specific fragments extracted= 1 number of extra gaps= 1 total=30062 # 1szwA.94.80 read from T0547.t2k.many.frag # found chain 1szwA in template set T0547 94 :VKNLVKLGK 1szwA 59 :ADALAKFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30063 # 1t6cA.94.102 read from T0547.t2k.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)G101 (1t6cA)V107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (1t6cA)G108 because T (delta_L) conformation "forbidden" or filtered. T0547 94 :VKNLVKL 1t6cA 100 :LERVKRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=30064 # 2d28C.94.10 read from T0547.t2k.many.frag # found chain 2d28C in template set T0547 94 :VKNLVKLGK 2d28C 11 :VEALLERRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30065 # 3lzt.94.8 read from T0547.t2k.many.frag # found chain 3lzt in training set T0547 94 :VKNLVKLGK 3lzt 9 :AAAMKRHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30066 # 1ru3A.95.86 read from T0547.t2k.many.frag # found chain 1ru3A in template set T0547 95 :KNLVKLGKD 1ru3A 87 :NRMRAQIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30067 # 1n0qA.95.51 read from T0547.t2k.many.frag # found chain 1n0qA in training set Warning: unaligning (T0547)K102 (1n0qA)A59 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKLG 1n0qA 52 :KLLLEAG T0547 103 :D 1n0qA 60 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=30069 1gxjA expands to /projects/compbio/data/pdb/1gxj.pdb.gz 1gxjA:# 1gxjA.95.19 read from T0547.t2k.many.frag # adding 1gxjA to template set # found chain 1gxjA in template set T0547 95 :KNLVKLGKD 1gxjA 504 :RAVFEEKER Number of specific fragments extracted= 1 number of extra gaps= 0 total=30070 # 1ei6A.95.31 read from T0547.t2k.many.frag # found chain 1ei6A in template set Warning: unaligning (T0547)D103 (1ei6A)A41 because D (zeta) conformation "forbidden" or filtered. T0547 95 :KNLVKLGK 1ei6A 33 :NQAIQAGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=30071 # 1vjrA.95.67 read from T0547.t2k.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)K102 (1vjrA)V63 because D (zeta) conformation "forbidden" or filtered. T0547 95 :KNLVKLG 1vjrA 56 :RKLRNMG T0547 103 :D 1vjrA 64 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=30073 # 1vjjA.95.256 read from T0547.t2k.many.frag # found chain 1vjjA in template set T0547 95 :KNLVKLGKD 1vjjA 257 :KNWKKSGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30074 # 1tzvA.95.62 read from T0547.t2k.many.frag # found chain 1tzvA in training set T0547 95 :KNLVKLGKD 1tzvA 63 :DLISRYLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30075 # 1rqlA.95.112 read from T0547.t2k.many.frag # found chain 1rqlA in template set T0547 95 :KNLVKLGKD 1rqlA 113 :ASLRERGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30076 1thtA expands to /projects/compbio/data/pdb/1tht.pdb.gz 1thtA:# 1thtA.95.97 read from T0547.t2k.many.frag # adding 1thtA to template set # found chain 1thtA in template set T0547 95 :KNLVKLGKD 1thtA 98 :HWLQTKGTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30077 # 1ox0A.95.219 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)K102 (1ox0A)A208 because G (3-10) conformation "forbidden" or filtered. T0547 95 :KNLVKLG 1ox0A 201 :AGFQALT T0547 103 :D 1ox0A 209 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=30079 1w33A expands to /projects/compbio/data/pdb/1w33.pdb.gz 1w33A:Skipped atom 679, because occupancy 0.350 <= existing 0.650 in 1w33A Skipped atom 680, because occupancy 0.350 <= existing 0.650 in 1w33A Skipped atom 681, because occupancy 0.350 <= existing 0.650 in 1w33A Skipped atom 682, because occupancy 0.350 <= existing 0.650 in 1w33A # 1w33A.95.25 read from T0547.t2k.many.frag # adding 1w33A to template set # found chain 1w33A in template set T0547 95 :KNLVKLGKD 1w33A 95 :AKIAKEKFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30080 # 1wfxA.95.146 read from T0547.t2k.many.frag # found chain 1wfxA in template set T0547 95 :KNLVKLGKD 1wfxA 147 :ECLRRRGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30081 # 3lzt.95.9 read from T0547.t2k.many.frag # found chain 3lzt in training set T0547 95 :KNLVKLGKD 3lzt 10 :AAMKRHGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30082 # 1t7lA.95.217 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 95 :KNLVKLGKD 1t7lA 186 :EKLVENGCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30083 # 1fcqA.95.169 read from T0547.t2k.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)G101 (1fcqA)R176 because D (zeta) conformation "forbidden" or filtered. T0547 95 :KNLVKL 1fcqA 170 :KAAKRM T0547 102 :KD 1fcqA 177 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30085 # 1va6A.95.433 read from T0547.t2k.many.frag # found chain 1va6A in template set T0547 95 :KNLVKLGKD 1va6A 434 :DELVACFDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30086 # 1vq2A.95.110 read from T0547.t2k.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)D103 (1vq2A)S119 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKLGK 1vq2A 111 :LFAAENGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=30087 1oxwA expands to /projects/compbio/data/pdb/1oxw.pdb.gz 1oxwA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1oxwA.95.216 read from T0547.t2k.many.frag # adding 1oxwA to template set # found chain 1oxwA in template set T0547 95 :KNLVKLGKD 1oxwA 230 :SVATRLAQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30088 # 1vkyA.95.196 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)K102 (1vkyA)V192 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKLG 1vkyA 185 :EKLKKKG T0547 103 :D 1vkyA 193 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=30090 # 1b8oA.95.206 read from T0547.t2k.many.frag # found chain 1b8oA in training set T0547 95 :KNLVKLGKD 1b8oA 207 :RLLRNLGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30091 # 2f2bA.95.67 read from T0547.t2k.many.frag # found chain 2f2bA in training set T0547 95 :KNLVKLGKD 2f2bA 68 :ASIYALGNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30092 # 2bmfA.95.61 read from T0547.t2k.many.frag # found chain 2bmfA in template set Warning: unaligning (T0547)G101 (2bmfA)L235 because G (3-10) conformation "forbidden" or filtered. T0547 95 :KNLVKL 2bmfA 229 :AEMEEA T0547 102 :KD 2bmfA 236 :RG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30094 1wusA expands to /projects/compbio/data/pdb/1wus.pdb.gz 1wusA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wusA.95.27 read from T0547.t2k.many.frag # adding 1wusA to template set # found chain 1wusA in template set T0547 95 :KNLVKLGKD 1wusA 103 :ESALNLGRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30095 # 2bryA.95.56 read from T0547.t2k.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)G101 (2bryA)L55 because G (3-10) conformation "forbidden" or filtered. T0547 95 :KNLVKL 2bryA 49 :HKIKAQ T0547 102 :KD 2bryA 56 :NY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30097 # 1q7zA.95.132 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 95 :KNLVKLGKD 1q7zA 133 :EIMVEEGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30098 # 1s99A.95.28 read from T0547.t2k.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)G101 (1s99A)T35 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKL 1s99A 29 :KSALAA T0547 102 :KD 1s99A 36 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30100 # 2d28C.95.11 read from T0547.t2k.many.frag # found chain 2d28C in template set T0547 95 :KNLVKLGKD 2d28C 12 :EALLERRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30101 # 1yxyA.95.42 read from T0547.t2k.many.frag # found chain 1yxyA in training set T0547 95 :KNLVKLGKD 1yxyA 43 :KAAQEAGAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30102 # 1c1dA.95.126 read from T0547.t2k.many.frag # found chain 1c1dA in training set Warning: unaligning (T0547)G101 (1c1dA)T133 because E (beta_S) conformation "forbidden" or filtered. T0547 95 :KNLVKL 1c1dA 127 :DTLNDT T0547 102 :KD 1c1dA 134 :EF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30104 # 1wu7A.95.168 read from T0547.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)K102 (1wu7A)T176 because Y (epsilon') conformation "forbidden" or filtered. T0547 95 :KNLVKLG 1wu7A 169 :EEIIGGM T0547 103 :D 1wu7A 177 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=30106 1u9yA expands to /projects/compbio/data/pdb/1u9y.pdb.gz 1u9yA:# 1u9yA.96.14 read from T0547.t2k.many.frag # adding 1u9yA to template set # found chain 1u9yA in template set Warning: unaligning (T0547)K102 (1u9yA)N21 because L (left) conformation "forbidden" or filtered. T0547 96 :NLVKLG 1u9yA 15 :KVAKLL T0547 103 :DY 1u9yA 22 :TK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30108 # 1gxjA.96.20 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 96 :NLVKLGKDY 1gxjA 505 :AVFEEKERF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30109 # 1ru3A.96.87 read from T0547.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)G101 (1ru3A)I93 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKL 1ru3A 88 :RMRAQ T0547 102 :KDY 1ru3A 94 :KSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30111 # 1fcqA.96.170 read from T0547.t2k.many.frag # found chain 1fcqA in training set T0547 96 :NLVKLGKDY 1fcqA 171 :AAKRMRPAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30112 # 1s99A.96.29 read from T0547.t2k.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)G101 (1s99A)T35 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKL 1s99A 30 :SALAA T0547 102 :KDY 1s99A 36 :DTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30114 # 1va6A.96.434 read from T0547.t2k.many.frag # found chain 1va6A in template set Warning: unaligning (T0547)D103 (1va6A)N442 because D (zeta) conformation "forbidden" or filtered. T0547 96 :NLVKLGK 1va6A 435 :ELVACFD T0547 104 :Y 1va6A 443 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=30116 # 1n0qA.96.52 read from T0547.t2k.many.frag # found chain 1n0qA in training set T0547 96 :NLVKLGKDY 1n0qA 53 :LLLEAGADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30117 # 1r0mA.96.181 read from T0547.t2k.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)G101 (1r0mA)F187 because D (zeta) conformation "forbidden" or filtered. T0547 96 :NLVKL 1r0mA 182 :ATREA T0547 102 :KDY 1r0mA 188 :PDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30119 # 1tzvA.96.63 read from T0547.t2k.many.frag # found chain 1tzvA in training set Warning: unaligning (T0547)G101 (1tzvA)L69 because E (beta_S) conformation "forbidden" or filtered. T0547 96 :NLVKL 1tzvA 64 :LISRY T0547 102 :KDY 1tzvA 70 :EKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=30121 # 1vjrA.96.68 read from T0547.t2k.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)K102 (1vjrA)V63 because D (zeta) conformation "forbidden" or filtered. T0547 96 :NLVKLG 1vjrA 57 :KLRNMG T0547 103 :DY 1vjrA 64 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30123 # 2bryA.96.57 read from T0547.t2k.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)D103 (2bryA)Y57 because Y (epsilon') conformation "forbidden" or filtered. T0547 96 :NLVKLGK 2bryA 50 :KIKAQLN T0547 104 :Y 2bryA 58 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=30125 # 1w5qA.96.113 read from T0547.t2k.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)G101 (1w5qA)F119 because D (zeta) conformation "forbidden" or filtered. T0547 96 :NLVKL 1w5qA 114 :ALRER T0547 102 :KDY 1w5qA 120 :PEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30127 # 1oxwA.96.217 read from T0547.t2k.many.frag # found chain 1oxwA in template set T0547 96 :NLVKLGKDY 1oxwA 231 :VATRLAQKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30128 1whsA expands to /projects/compbio/data/pdb/1whs.pdb.gz 1whsA:# 1whsA.96.133 read from T0547.t2k.many.frag # adding 1whsA to template set # found chain 1whsA in template set T0547 96 :NLVKLGKDY 1whsA 125 :KWFERFPHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30129 # 1wusA.96.28 read from T0547.t2k.many.frag # found chain 1wusA in template set T0547 96 :NLVKLGKDY 1wusA 104 :SALNLGRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30130 # 2f2bA.96.68 read from T0547.t2k.many.frag # found chain 2f2bA in training set T0547 96 :NLVKLGKDY 2f2bA 69 :SIYALGNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30131 # 1thtA.96.98 read from T0547.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)K102 (1thtA)T105 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKLG 1thtA 99 :WLQTKG T0547 103 :DY 1thtA 106 :QN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30133 1lrv expands to /projects/compbio/data/pdb/1lrv.pdb.gz 1lrv:Warning: there is no chain 1lrv will retry with 1lrvA # 1lrv.96.164 read from T0547.t2k.many.frag # adding 1lrv to template set # found chain 1lrv in template set Warning: unaligning (T0547)G101 (1lrv)L170 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKL 1lrv 165 :LVAKR T0547 102 :KDY 1lrv 171 :PEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30135 # 3lzt.96.10 read from T0547.t2k.many.frag # found chain 3lzt in training set T0547 96 :NLVKLGKDY 3lzt 11 :AMKRHGLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30136 # 1vd6A.96.113 read from T0547.t2k.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)G101 (1vd6A)L119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (1vd6A)R120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (1vd6A)G121 because T (delta_L) conformation "forbidden" or filtered. T0547 96 :NLVKL 1vd6A 114 :RLAAL T0547 104 :Y 1vd6A 122 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=30138 # 1vjjA.96.257 read from T0547.t2k.many.frag # found chain 1vjjA in template set Warning: unaligning (T0547)K102 (1vjjA)L264 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (1vjjA)S265 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKLG 1vjjA 258 :NWKKSG T0547 104 :Y 1vjjA 266 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=30140 # 1szwA.96.82 read from T0547.t2k.many.frag # found chain 1szwA in template set T0547 96 :NLVKLGKDY 1szwA 61 :ALAKFLKIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30141 2b8nA expands to /projects/compbio/data/pdb/2b8n.pdb.gz 2b8nA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2b8nA.96.66 read from T0547.t2k.many.frag # adding 2b8nA to template set # found chain 2b8nA in template set T0547 96 :NLVKLGKDY 2b8nA 55 :AAYEVLGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30142 # 2bmfA.96.62 read from T0547.t2k.many.frag # found chain 2bmfA in template set Warning: unaligning (T0547)G101 (2bmfA)L235 because G (3-10) conformation "forbidden" or filtered. T0547 96 :NLVKL 2bmfA 230 :EMEEA T0547 102 :KDY 2bmfA 236 :RGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30144 # 2al2A.96.91 read from T0547.t2k.many.frag # found chain 2al2A in template set T0547 96 :NLVKLGKDY 2al2A 92 :FLISLDGTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30145 # 1vq2A.96.111 read from T0547.t2k.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)K102 (1vq2A)S118 because E (beta_S) conformation "forbidden" or filtered. T0547 96 :NLVKLG 1vq2A 112 :FAAENG T0547 103 :DY 1vq2A 119 :SI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30147 # 1t7lA.96.218 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 96 :NLVKLGKDY 1t7lA 187 :KLVENGCKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30148 # 1w33A.96.26 read from T0547.t2k.many.frag # found chain 1w33A in template set T0547 96 :NLVKLGKDY 1w33A 96 :KIAKEKFDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30149 # 1sauA.96.75 read from T0547.t2k.many.frag # found chain 1sauA in training set T0547 96 :NLVKLGKDY 1sauA 76 :HCKKEVRPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30150 2ar0A expands to /projects/compbio/data/pdb/2ar0.pdb.gz 2ar0A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2ar0A.96.189 read from T0547.t2k.many.frag # adding 2ar0A to template set # found chain 2ar0A in template set Warning: unaligning (T0547)G101 (2ar0A)T195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y104 (2ar0A)L198 because T (delta_L) conformation "forbidden" or filtered. T0547 96 :NLVKL 2ar0A 190 :YVKSQ T0547 102 :KD 2ar0A 196 :ND Number of specific fragments extracted= 2 number of extra gaps= 2 total=30152 # 1va6A.97.435 read from T0547.t2k.many.frag # found chain 1va6A in template set T0547 97 :LVKLGKDYN 1va6A 436 :LVACFDNPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30153 # 1tzvA.97.64 read from T0547.t2k.many.frag # found chain 1tzvA in training set Warning: unaligning (T0547)G101 (1tzvA)L69 because E (beta_S) conformation "forbidden" or filtered. T0547 97 :LVKL 1tzvA 65 :ISRY T0547 102 :KDYN 1tzvA 70 :EKWS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30155 # 1wusA.97.29 read from T0547.t2k.many.frag # found chain 1wusA in template set Warning: unaligning (T0547)N105 (1wusA)D113 because Y (epsilon') conformation "forbidden" or filtered. T0547 97 :LVKLGKDY 1wusA 105 :ALNLGRTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30156 # 1lrv.97.165 read from T0547.t2k.many.frag # found chain 1lrv in template set Warning: unaligning (T0547)K102 (1lrv)P171 because P (beta_P) conformation "forbidden" or filtered. T0547 97 :LVKLG 1lrv 166 :VAKRL T0547 103 :DYN 1lrv 172 :EES Number of specific fragments extracted= 2 number of extra gaps= 1 total=30158 # 1gxjA.97.21 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 97 :LVKLGKDYN 1gxjA 506 :VFEEKERFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30159 # 1u9yA.97.15 read from T0547.t2k.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)K102 (1u9yA)N21 because L (left) conformation "forbidden" or filtered. T0547 97 :LVKLG 1u9yA 16 :VAKLL T0547 103 :DYN 1u9yA 22 :TKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30161 # 2f2bA.97.69 read from T0547.t2k.many.frag # found chain 2f2bA in training set Warning: unaligning (T0547)Y104 (2f2bA)S77 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (2f2bA)G78 because T (delta_L) conformation "forbidden" or filtered. T0547 97 :LVKLGKD 2f2bA 70 :IYALGNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=30162 # 1s99A.97.30 read from T0547.t2k.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)G101 (1s99A)T35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1s99A)K39 because G (3-10) conformation "forbidden" or filtered. T0547 97 :LVKL 1s99A 31 :ALAA T0547 102 :KDY 1s99A 36 :DTS Number of specific fragments extracted= 2 number of extra gaps= 2 total=30164 1tjvA expands to /projects/compbio/data/pdb/1tjv.pdb.gz 1tjvA:# 1tjvA.97.97 read from T0547.t2k.many.frag # adding 1tjvA to template set # found chain 1tjvA in template set Warning: unaligning (T0547)G101 (1tjvA)I102 because G (3-10) conformation "forbidden" or filtered. T0547 97 :LVKL 1tjvA 98 :LKEL T0547 102 :KDYN 1tjvA 103 :GDIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30166 # 1w33A.97.27 read from T0547.t2k.many.frag # found chain 1w33A in template set T0547 97 :LVKLGKDYN 1w33A 97 :IAKEKFDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30167 # 1vjrA.97.69 read from T0547.t2k.many.frag # found chain 1vjrA in template set T0547 97 :LVKLGKDYN 1vjrA 58 :LRNMGVDVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30168 # 1ru3A.97.88 read from T0547.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)G101 (1ru3A)I93 because P (beta_P) conformation "forbidden" or filtered. T0547 97 :LVKL 1ru3A 89 :MRAQ T0547 102 :KDYN 1ru3A 94 :KSEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30170 # 1fcqA.97.171 read from T0547.t2k.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)G101 (1fcqA)R176 because D (zeta) conformation "forbidden" or filtered. T0547 97 :LVKL 1fcqA 172 :AKRM T0547 102 :KDYN 1fcqA 177 :PAAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30172 # 2bmfA.97.63 read from T0547.t2k.many.frag # found chain 2bmfA in template set Warning: unaligning (T0547)G101 (2bmfA)L235 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (2bmfA)G237 because T (delta_L) conformation "forbidden" or filtered. T0547 97 :LVKL 2bmfA 231 :MEEA T0547 102 :K 2bmfA 236 :R T0547 104 :YN 2bmfA 238 :LP Number of specific fragments extracted= 3 number of extra gaps= 2 total=30175 # 2bryA.97.58 read from T0547.t2k.many.frag # found chain 2bryA in training set T0547 97 :LVKLGKDYN 2bryA 51 :IKAQLNYWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30176 # 1n0qA.97.53 read from T0547.t2k.many.frag # found chain 1n0qA in training set Warning: unaligning (T0547)K102 (1n0qA)A59 because P (beta_P) conformation "forbidden" or filtered. T0547 97 :LVKLG 1n0qA 54 :LLEAG T0547 103 :DYN 1n0qA 60 :DVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30178 # 1dg9A.97.62 read from T0547.t2k.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)K102 (1dg9A)I68 because E (beta_S) conformation "forbidden" or filtered. T0547 97 :LVKLG 1dg9A 63 :LRNHG T0547 103 :DYN 1dg9A 69 :NTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30180 # 1whsA.97.134 read from T0547.t2k.many.frag # found chain 1whsA in template set T0547 97 :LVKLGKDYN 1whsA 126 :WFERFPHYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30181 # 1vd6A.97.114 read from T0547.t2k.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)G101 (1vd6A)L119 because G (3-10) conformation "forbidden" or filtered. T0547 97 :LVKL 1vd6A 115 :LAAL T0547 102 :KDYN 1vd6A 120 :RGRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30183 # 1oxwA.97.218 read from T0547.t2k.many.frag # found chain 1oxwA in template set T0547 97 :LVKLGKDYN 1oxwA 232 :ATRLAQKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30184 # 1vjjA.97.258 read from T0547.t2k.many.frag # found chain 1vjjA in template set Warning: unaligning (T0547)K102 (1vjjA)L264 because L (left) conformation "forbidden" or filtered. T0547 97 :LVKLG 1vjjA 259 :WKKSG T0547 103 :DYN 1vjjA 265 :SPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30186 # 2b8nA.97.67 read from T0547.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K102 (2b8nA)G61 because S (epsilon) conformation "forbidden" or filtered. T0547 97 :LVKLG 2b8nA 56 :AYEVL T0547 103 :DYN 2b8nA 62 :KKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30188 # 1r0mA.97.182 read from T0547.t2k.many.frag # found chain 1r0mA in training set T0547 97 :LVKLGKDYN 1r0mA 183 :TREAFPDIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30189 # 1vq2A.97.112 read from T0547.t2k.many.frag # found chain 1vq2A in template set T0547 97 :LVKLGKDYN 1vq2A 113 :AAENGSSIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30190 # 1ytlA.97.73 read from T0547.t2k.many.frag # found chain 1ytlA in training set T0547 97 :LVKLGKDYN 1ytlA 74 :FIDAGLGEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30191 # 1szwA.97.83 read from T0547.t2k.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)K102 (1szwA)K67 because L (left) conformation "forbidden" or filtered. T0547 97 :LVKLG 1szwA 62 :LAKFL T0547 103 :DYN 1szwA 68 :IHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30193 # 1h4gA.97.165 read from T0547.t2k.many.frag # found chain 1h4gA in training set T0547 97 :LVKLGKDYN 1h4gA 166 :WENLGMNMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30194 # 1mla.97.76 read from T0547.t2k.many.frag # found chain 1mla in training set T0547 97 :LVKLGKDYN 1mla 77 :WQQQGGKAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30195 # 1thtA.97.99 read from T0547.t2k.many.frag # found chain 1thtA in template set T0547 97 :LVKLGKDYN 1thtA 100 :LQTKGTQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30196 # 3lzt.97.11 read from T0547.t2k.many.frag # found chain 3lzt in training set Warning: unaligning (T0547)Y104 (3lzt)N19 because T (delta_L) conformation "forbidden" or filtered. T0547 97 :LVKLGKD 3lzt 12 :MKRHGLD T0547 105 :N 3lzt 20 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=30198 # 1lrv.98.166 read from T0547.t2k.many.frag # found chain 1lrv in template set Warning: unaligning (T0547)G101 (1lrv)L170 because P (beta_P) conformation "forbidden" or filtered. T0547 98 :VKL 1lrv 167 :AKR T0547 102 :KDYNY 1lrv 171 :PEESL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30200 # 1va6A.98.436 read from T0547.t2k.many.frag # found chain 1va6A in template set T0547 98 :VKLGKDYNY 1va6A 437 :VACFDNPDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30201 # 2bmfA.98.64 read from T0547.t2k.many.frag # found chain 2bmfA in template set T0547 98 :VKLGKDYNY 2bmfA 232 :EEALRGLPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30202 # 1tjvA.98.98 read from T0547.t2k.many.frag # found chain 1tjvA in template set T0547 98 :VKLGKDYNY 1tjvA 99 :KELIGDIAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30203 # 1tzvA.98.65 read from T0547.t2k.many.frag # found chain 1tzvA in training set T0547 98 :VKLGKDYNY 1tzvA 66 :SRYLEKWSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30204 # 1gxjA.98.22 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 98 :VKLGKDYNY 1gxjA 507 :FEEKERFPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30205 # 1u9yA.98.16 read from T0547.t2k.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)G101 (1u9yA)L20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (1u9yA)N21 because L (left) conformation "forbidden" or filtered. T0547 98 :VKL 1u9yA 17 :AKL T0547 103 :DYNY 1u9yA 22 :TKLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30207 # 1oxwA.98.219 read from T0547.t2k.many.frag # found chain 1oxwA in template set T0547 98 :VKLGKDYNY 1oxwA 233 :TRLAQKDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30208 # 1fcqA.98.172 read from T0547.t2k.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)G101 (1fcqA)R176 because D (zeta) conformation "forbidden" or filtered. T0547 98 :VKL 1fcqA 173 :KRM T0547 102 :KDYNY 1fcqA 177 :PAANW Number of specific fragments extracted= 2 number of extra gaps= 1 total=30210 # 1vjjA.98.259 read from T0547.t2k.many.frag # found chain 1vjjA in template set Warning: unaligning (T0547)K102 (1vjjA)L264 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1vjjA)Y269 T0547 98 :VKLG 1vjjA 260 :KKSG T0547 103 :DYN 1vjjA 265 :SPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=30212 # 2b8nA.98.68 read from T0547.t2k.many.frag # found chain 2b8nA in template set T0547 98 :VKLGKDYNY 2b8nA 57 :YEVLGKKIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30213 # 1a8y.98.61 read from T0547.t2k.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)N105 (1a8y)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 98 :VKLGKDY 1a8y 62 :AQVLEDK T0547 106 :Y 1a8y 70 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=30215 # 1w33A.98.28 read from T0547.t2k.many.frag # found chain 1w33A in template set T0547 98 :VKLGKDYNY 1w33A 98 :AKEKFDFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30216 # 1ytlA.98.74 read from T0547.t2k.many.frag # found chain 1ytlA in training set T0547 98 :VKLGKDYNY 1ytlA 75 :IDAGLGEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30217 # 1lrv.98.190 read from T0547.t2k.many.frag # found chain 1lrv in template set Warning: unaligning (T0547)D103 (1lrv)G196 because S (epsilon) conformation "forbidden" or filtered. T0547 98 :VKLGK 1lrv 191 :ASRLR T0547 104 :YNY 1lrv 197 :DDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30219 # 2f2bA.98.70 read from T0547.t2k.many.frag # found chain 2f2bA in training set Warning: unaligning (T0547)G101 (2f2bA)G74 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (2f2bA)N75 because G (3-10) conformation "forbidden" or filtered. T0547 98 :VKL 2f2bA 71 :YAL T0547 103 :DYNY 2f2bA 76 :ISGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=30221 # 1byi.98.26 read from T0547.t2k.many.frag # found chain 1byi in training set T0547 98 :VKLGKDYNY 1byi 27 :KAAGYRTAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30222 1u20A expands to /projects/compbio/data/pdb/1u20.pdb.gz 1u20A:Skipped atom 36, because occupancy 0.500 <= existing 0.500 in 1u20A Skipped atom 38, because occupancy 0.500 <= existing 0.500 in 1u20A Skipped atom 40, because occupancy 0.500 <= existing 0.500 in 1u20A Skipped atom 42, because occupancy 0.500 <= existing 0.500 in 1u20A Skipped atom 44, because occupancy 0.500 <= existing 0.500 in 1u20A Skipped atom 46, because occupancy 0.500 <= existing 0.500 in 1u20A Skipped atom 48, because occupancy 0.500 <= existing 0.500 in 1u20A Skipped atom 1153, because occupancy 0.500 <= existing 0.500 in 1u20A Skipped atom 1155, because occupancy 0.500 <= existing 0.500 in 1u20A Skipped atom 1157, because occupancy 0.500 <= existing 0.500 in 1u20A Skipped atom 1159, because occupancy 0.500 <= existing 0.500 in 1u20A Skipped atom 1161, because occupancy 0.500 <= existing 0.500 in 1u20A Skipped atom 1163, because occupancy 0.500 <= existing 0.500 in 1u20A Skipped atom 1165, because occupancy 0.500 <= existing 0.500 in 1u20A # 1u20A.98.90 read from T0547.t2k.many.frag # adding 1u20A to template set # found chain 1u20A in template set Warning: unaligning (T0547)K102 (1u20A)G95 because S (epsilon) conformation "forbidden" or filtered. T0547 98 :VKLG 1u20A 91 :EEEL T0547 103 :DYNY 1u20A 96 :PALA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30224 2a6aA expands to /projects/compbio/data/pdb/2a6a.pdb.gz 2a6aA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2a6aA.98.89 read from T0547.t2k.many.frag # adding 2a6aA to template set # found chain 2a6aA in template set Warning: unaligning (T0547)Y104 (2a6aA)Y84 because G (3-10) conformation "forbidden" or filtered. T0547 98 :VKLGKD 2a6aA 78 :VGLVSP T0547 105 :NY 2a6aA 85 :DI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30226 # 1vjrA.98.70 read from T0547.t2k.many.frag # found chain 1vjrA in template set T0547 98 :VKLGKDYNY 1vjrA 59 :RNMGVDVPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30227 # 1dg9A.98.63 read from T0547.t2k.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)D103 (1dg9A)N69 because E (beta_S) conformation "forbidden" or filtered. T0547 98 :VKLGK 1dg9A 64 :RNHGI T0547 104 :YNY 1dg9A 70 :TAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=30229 # 1wfxA.98.149 read from T0547.t2k.many.frag # found chain 1wfxA in template set T0547 98 :VKLGKDYNY 1wfxA 150 :RRRGLKVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=30230 # 1szwA.98.84 read from T0547.t2k.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)D103 (1szwA)I68 because E (beta_S) conformation "forbidden" or filtered. T0547 98 :VKLGK 1szwA 63 :AKFLK T0547 104 :YNY 1szwA 69 :HAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=30232 # 1r0mA.98.183 read from T0547.t2k.many.frag # found chain 1r0mA in training set T0547 98 :VKLGKDYNY 1r0mA 184 :REAFPDIRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30233 # 1wusA.98.30 read from T0547.t2k.many.frag # found chain 1wusA in template set Warning: unaligning (T0547)N105 (1wusA)D113 because Y (epsilon') conformation "forbidden" or filtered. T0547 98 :VKLGKDY 1wusA 106 :LNLGRTL T0547 106 :Y 1wusA 114 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=30235 # 2azeA.98.127 read from T0547.t2k.many.frag # found chain 2azeA in template set Warning: unaligning (T0547)G101 (2azeA)V326 because E (beta_S) conformation "forbidden" or filtered. T0547 98 :VKL 2azeA 323 :RSL T0547 102 :KDYNY 2azeA 327 :PKALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30237 1sp3A expands to /projects/compbio/data/pdb/1sp3.pdb.gz 1sp3A:# 1sp3A.98.376 read from T0547.t2k.many.frag # adding 1sp3A to template set # found chain 1sp3A in template set Warning: unaligning (T0547)Y106 (1sp3A)G385 because T (delta_L) conformation "forbidden" or filtered. T0547 98 :VKLGKDYN 1sp3A 377 :LEKGIKYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=30238 # 1ze3D.98.93 read from T0547.t2k.many.frag # found chain 1ze3D in template set T0547 98 :VKLGKDYNY 1ze3D 94 :TTMVQDATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30239 # 1mla.98.77 read from T0547.t2k.many.frag # found chain 1mla in training set T0547 98 :VKLGKDYNY 1mla 78 :QQQGGKAPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30240 # 1psrA.98.46 read from T0547.t2k.many.frag # found chain 1psrA in training set Warning: unaligning (T0547)D103 (1psrA)N52 because N (gamma') conformation "forbidden" or filtered. T0547 98 :VKLGK 1psrA 47 :DKKGT T0547 104 :YNY 1psrA 53 :YLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30242 # 1a8y.99.62 read from T0547.t2k.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)N105 (1a8y)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 99 :KLGKDY 1a8y 63 :QVLEDK T0547 106 :YG 1a8y 70 :VG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30244 # 2a6aA.99.90 read from T0547.t2k.many.frag # found chain 2a6aA in template set T0547 99 :KLGKDYNYG 2a6aA 79 :GLVSPYDIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30245 # 1lrv.99.167 read from T0547.t2k.many.frag # found chain 1lrv in template set T0547 99 :KLGKDYNYG 1lrv 168 :KRLPEESLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30246 # 1ze3D.99.94 read from T0547.t2k.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)G101 (1ze3D)V97 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (1ze3D)D99 because L (left) conformation "forbidden" or filtered. T0547 99 :KL 1ze3D 95 :TM T0547 102 :K 1ze3D 98 :Q T0547 104 :YNYG 1ze3D 100 :ATAH Number of specific fragments extracted= 3 number of extra gaps= 2 total=30249 # 1tjvA.99.99 read from T0547.t2k.many.frag # found chain 1tjvA in template set Warning: unaligning (T0547)G101 (1tjvA)I102 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (1tjvA)G103 because S (epsilon) conformation "forbidden" or filtered. T0547 99 :KL 1tjvA 100 :EL T0547 103 :DYNYG 1tjvA 104 :DIAGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30251 # 1tzvA.99.66 read from T0547.t2k.many.frag # found chain 1tzvA in training set T0547 99 :KLGKDYNYG 1tzvA 67 :RYLEKWSLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30252 # 1va6A.99.437 read from T0547.t2k.many.frag # found chain 1va6A in template set Warning: unaligning (T0547)D103 (1va6A)N442 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1va6A)T446 because P (beta_P) conformation "forbidden" or filtered. T0547 99 :KLGK 1va6A 438 :ACFD T0547 104 :YNY 1va6A 443 :PDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=30254 # 2b9sB.99.33 read from T0547.t2k.many.frag # found chain 2b9sB in template set T0547 99 :KLGKDYNYG 2b9sB 234 :AQDVPINKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30255 # 1sp3A.99.377 read from T0547.t2k.many.frag # found chain 1sp3A in template set Warning: unaligning (T0547)D103 (1sp3A)K382 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y106 (1sp3A)G385 because T (delta_L) conformation "forbidden" or filtered. T0547 99 :KLGK 1sp3A 378 :EKGI T0547 104 :YN 1sp3A 383 :YS T0547 107 :G 1sp3A 386 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=30258 # 2bmfA.99.65 read from T0547.t2k.many.frag # found chain 2bmfA in template set Warning: unaligning (T0547)G101 (2bmfA)L235 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (2bmfA)G237 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (2bmfA)R241 because P (beta_P) conformation "forbidden" or filtered. T0547 99 :KL 2bmfA 233 :EA T0547 102 :K 2bmfA 236 :R T0547 104 :YNY 2bmfA 238 :LPI Number of specific fragments extracted= 3 number of extra gaps= 3 total=30261 # 1u20A.99.91 read from T0547.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)G101 (1u20A)L94 because G (3-10) conformation "forbidden" or filtered. T0547 99 :KL 1u20A 92 :EE T0547 102 :KDYNYG 1u20A 95 :GPALAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30263 # 1r0mA.99.184 read from T0547.t2k.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)G101 (1r0mA)F187 because D (zeta) conformation "forbidden" or filtered. T0547 99 :KL 1r0mA 185 :EA T0547 102 :KDYNYG 1r0mA 188 :PDIRLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30265 # 1w33A.99.29 read from T0547.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0547)G107 (1w33A)T107 because G (3-10) conformation "forbidden" or filtered. T0547 99 :KLGKDYNY 1w33A 99 :KEKFDFLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=30266 # 1gxjA.99.23 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 99 :KLGKDYNYG 1gxjA 508 :EEKERFPGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30267 # 2b8nA.99.69 read from T0547.t2k.many.frag # found chain 2b8nA in template set T0547 99 :KLGKDYNYG 2b8nA 58 :EVLGKKIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30268 # 1fcqA.99.173 read from T0547.t2k.many.frag # found chain 1fcqA in training set T0547 99 :KLGKDYNYG 1fcqA 174 :RMRPAANWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30269 # 1dg9A.99.31 read from T0547.t2k.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)N105 (1dg9A)N38 because G (3-10) conformation "forbidden" or filtered. T0547 99 :KLGKDY 1dg9A 32 :DQNISD T0547 106 :YG 1dg9A 39 :WV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30271 1gvhA expands to /projects/compbio/data/pdb/1gvh.pdb.gz 1gvhA:# 1gvhA.99.33 read from T0547.t2k.many.frag # adding 1gvhA to template set # found chain 1gvhA in template set T0547 99 :KLGKDYNYG 1gvhA 34 :THNPELKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30272 # 1byi.99.27 read from T0547.t2k.many.frag # found chain 1byi in training set T0547 99 :KLGKDYNYG 1byi 28 :AAGYRTAGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30273 # 1yt8A.99.276 read from T0547.t2k.many.frag # found chain 1yt8A in template set T0547 99 :KLGKDYNYG 1yt8A 277 :DEHDRTTYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30274 # 1w5qA.99.116 read from T0547.t2k.many.frag # found chain 1w5qA in training set T0547 99 :KLGKDYNYG 1w5qA 117 :ERFPELGII Number of specific fragments extracted= 1 number of extra gaps= 0 total=30275 # 1lrv.99.191 read from T0547.t2k.many.frag # found chain 1lrv in template set Warning: unaligning (T0547)D103 (1lrv)G196 because S (epsilon) conformation "forbidden" or filtered. T0547 99 :KLGK 1lrv 192 :SRLR T0547 104 :YNYG 1lrv 197 :DDLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30277 # 1psrA.99.47 read from T0547.t2k.many.frag # found chain 1psrA in training set Warning: unaligning (T0547)G107 (1psrA)D56 because G (3-10) conformation "forbidden" or filtered. T0547 99 :KLGKDYNY 1psrA 48 :KKGTNYLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30278 # 1vjjA.99.260 read from T0547.t2k.many.frag # found chain 1vjjA in template set Warning: unaligning (T0547)K102 (1vjjA)L264 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1vjjA)V267 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1vjjA)Y269 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE at template residue (1vjjA)Y269 T0547 99 :KLG 1vjjA 261 :KSG T0547 103 :DY 1vjjA 265 :SP Number of specific fragments extracted= 2 number of extra gaps= 2 total=30280 1ki9A expands to /projects/compbio/data/pdb/1ki9.pdb.gz 1ki9A:# 1ki9A.99.24 read from T0547.t2k.many.frag # adding 1ki9A to template set # found chain 1ki9A in template set Warning: unaligning (T0547)N105 (1ki9A)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 99 :KLGKDY 1ki9A 25 :EKLSEE T0547 106 :YG 1ki9A 32 :IN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30282 # 2ar0A.99.192 read from T0547.t2k.many.frag # found chain 2ar0A in template set Warning: unaligning (T0547)G101 (2ar0A)T195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y104 (2ar0A)L198 because T (delta_L) conformation "forbidden" or filtered. T0547 99 :KL 2ar0A 193 :SQ T0547 102 :KD 2ar0A 196 :ND T0547 105 :NYG 2ar0A 199 :DDL Number of specific fragments extracted= 3 number of extra gaps= 2 total=30285 # 1mla.99.78 read from T0547.t2k.many.frag # found chain 1mla in training set T0547 99 :KLGKDYNYG 1mla 79 :QQGGKAPAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30286 2f5uA expands to /projects/compbio/data/pdb/2f5u.pdb.gz 2f5uA:# 2f5uA.99.54 read from T0547.t2k.many.frag # adding 2f5uA to template set # found chain 2f5uA in template set Warning: unaligning (T0547)G107 (2f5uA)S196 because G (3-10) conformation "forbidden" or filtered. T0547 99 :KLGKDYNY 2f5uA 188 :TDFPLTTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=30287 # 2f2bA.99.71 read from T0547.t2k.many.frag # found chain 2f2bA in training set Warning: unaligning (T0547)Y106 (2f2bA)C79 because L (left) conformation "forbidden" or filtered. T0547 99 :KLGKDYN 2f2bA 72 :ALGNISG T0547 107 :G 2f2bA 80 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=30289 1qf5A expands to /projects/compbio/data/pdb/1qf5.pdb.gz 1qf5A:# 1qf5A.99.118 read from T0547.t2k.many.frag # adding 1qf5A to template set # found chain 1qf5A in template set T0547 99 :KLGKDYNYG 1qf5A 119 :KARGAKAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30290 # 1a8y.100.63 read from T0547.t2k.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)N105 (1a8y)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1a8y)G71 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :LGKDY 1a8y 64 :VLEDK T0547 106 :Y 1a8y 70 :V T0547 108 :L 1a8y 72 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=30293 # 2a6aA.100.91 read from T0547.t2k.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)G107 (2a6aA)P87 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :LGKDYNY 2a6aA 80 :LVSPYDI T0547 108 :L 2a6aA 88 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=30295 # 1yt8A.100.277 read from T0547.t2k.many.frag # found chain 1yt8A in template set T0547 100 :LGKDYNYGL 1yt8A 278 :EHDRTTYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30296 # 1ze3D.100.95 read from T0547.t2k.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)D103 (1ze3D)D99 because L (left) conformation "forbidden" or filtered. T0547 100 :LGK 1ze3D 96 :MVQ T0547 104 :YNYGL 1ze3D 100 :ATAHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30298 # 1gxjA.100.24 read from T0547.t2k.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G107 (1gxjA)L516 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :LGKDYNY 1gxjA 509 :EKERFPG T0547 108 :L 1gxjA 517 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=30300 # 1w5qA.100.117 read from T0547.t2k.many.frag # found chain 1w5qA in training set T0547 100 :LGKDYNYGL 1w5qA 118 :RFPELGIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30301 # 1r0mA.100.185 read from T0547.t2k.many.frag # found chain 1r0mA in training set T0547 100 :LGKDYNYGL 1r0mA 186 :AFPDIRLTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30302 # 2b8nA.100.70 read from T0547.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)G107 (2b8nA)K66 because E (beta_S) conformation "forbidden" or filtered. T0547 100 :LGKDYNY 2b8nA 59 :VLGKKIR T0547 108 :L 2b8nA 67 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=30304 # 1dg9A.100.32 read from T0547.t2k.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)K102 (1dg9A)I35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1dg9A)N38 because G (3-10) conformation "forbidden" or filtered. T0547 100 :LG 1dg9A 33 :QN T0547 103 :DY 1dg9A 36 :SD T0547 106 :YGL 1dg9A 39 :WVI Number of specific fragments extracted= 3 number of extra gaps= 2 total=30307 # 1qf5A.100.119 read from T0547.t2k.many.frag # found chain 1qf5A in template set Warning: unaligning (T0547)K102 (1qf5A)G122 because S (epsilon) conformation "forbidden" or filtered. T0547 100 :LG 1qf5A 120 :AR T0547 103 :DYNYGL 1qf5A 123 :AKAIGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30309 # 1lrv.100.168 read from T0547.t2k.many.frag # found chain 1lrv in template set Warning: unaligning (T0547)K102 (1lrv)P171 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :LG 1lrv 169 :RL T0547 103 :DYNYGL 1lrv 172 :EESLGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30311 # 1ki9A.100.25 read from T0547.t2k.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)G107 (1ki9A)N33 because D (zeta) conformation "forbidden" or filtered. T0547 100 :LGKDYNY 1ki9A 26 :KLSEEGI T0547 108 :L 1ki9A 34 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=30313 # 1tzvA.100.67 read from T0547.t2k.many.frag # found chain 1tzvA in training set T0547 100 :LGKDYNYGL 1tzvA 68 :YLEKWSLNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30314 # 1jx4A.100.90 read from T0547.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)N105 (1jx4A)S96 because Y (epsilon') conformation "forbidden" or filtered. T0547 100 :LGKDY 1jx4A 91 :LLREY T0547 106 :YGL 1jx4A 97 :EKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30316 # 1onwA.100.76 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)G101 (1onwA)A78 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1onwA)T84 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :L 1onwA 77 :E T0547 102 :KDYNY 1onwA 79 :GPTTR T0547 108 :L 1onwA 85 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=30319 # 1mla.100.79 read from T0547.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. T0547 100 :LGKDYNY 1mla 80 :QGGKAPA T0547 108 :L 1mla 88 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=30321 # 1u20A.100.92 read from T0547.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)G101 (1u20A)L94 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (1u20A)G95 because S (epsilon) conformation "forbidden" or filtered. T0547 100 :L 1u20A 93 :E T0547 103 :DYNYGL 1u20A 96 :PALATV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30323 # 1uekA.100.170 read from T0547.t2k.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)G101 (1uekA)V172 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :L 1uekA 171 :A T0547 102 :KDYNYGL 1uekA 173 :RPEDFGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=30325 # 1tca.100.92 read from T0547.t2k.many.frag # found chain 1tca in training set Warning: unaligning (T0547)G101 (1tca)S94 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1tca)P100 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :L 1tca 93 :G T0547 102 :KDYNY 1tca 95 :GNNKL T0547 108 :L 1tca 101 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=30328 # 1tjvA.100.100 read from T0547.t2k.many.frag # found chain 1tjvA in template set Warning: unaligning (T0547)G101 (1tjvA)I102 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (1tjvA)G103 because S (epsilon) conformation "forbidden" or filtered. T0547 100 :L 1tjvA 101 :L T0547 103 :DYNYGL 1tjvA 104 :DIAGKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30330 1ylqA expands to /projects/compbio/data/pdb/1ylq.pdb.gz 1ylqA:# 1ylqA.100.62 read from T0547.t2k.many.frag # adding 1ylqA to template set # found chain 1ylqA in template set T0547 100 :LGKDYNYGL 1ylqA 60 :KFFDSPFEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30331 # 1sp3A.100.378 read from T0547.t2k.many.frag # found chain 1sp3A in template set Warning: unaligning (T0547)Y106 (1sp3A)G385 because T (delta_L) conformation "forbidden" or filtered. T0547 100 :LGKDYN 1sp3A 379 :KGIKYS T0547 107 :GL 1sp3A 386 :EY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30333 # 1va6A.100.438 read from T0547.t2k.many.frag # found chain 1va6A in template set Warning: unaligning (T0547)Y106 (1va6A)L445 because G (3-10) conformation "forbidden" or filtered. T0547 100 :LGKDYN 1va6A 439 :CFDNPD T0547 107 :GL 1va6A 446 :TF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30335 # 1tf5A.100.450 read from T0547.t2k.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)G107 (1tf5A)P455 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L108 (1tf5A)H456 because Y (epsilon') conformation "forbidden" or filtered. T0547 100 :LGKDYNY 1tf5A 448 :LLKNKGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=30336 # 1fyeA.100.55 read from T0547.t2k.many.frag # found chain 1fyeA in training set T0547 100 :LGKDYNYGL 1fyeA 56 :VLAPLGVNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30337 # 1wdaA.100.332 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G107 (1wdaA)K333 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :LGKDYNY 1wdaA 326 :LAMKAKC T0547 108 :L 1wdaA 334 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=30339 # 2b9sB.100.34 read from T0547.t2k.many.frag # found chain 2b9sB in template set Warning: unaligning (T0547)K102 (2b9sB)V237 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :LG 2b9sB 235 :QD T0547 103 :DYNYGL 2b9sB 238 :PINKIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30341 # 1yzyA.100.209 read from T0547.t2k.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)G101 (1yzyA)V210 because G (3-10) conformation "forbidden" or filtered. T0547 100 :L 1yzyA 209 :A T0547 102 :KDYNYGL 1yzyA 211 :ADFKLVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30343 # 1moq.100.75 read from T0547.t2k.many.frag # found chain 1moq in training set Warning: unaligning (T0547)D103 (1moq)G319 because L (left) conformation "forbidden" or filtered. T0547 100 :LGK 1moq 316 :SLA T0547 104 :YNYGL 1moq 320 :IPCDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30345 # 1fcqA.100.174 read from T0547.t2k.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)G101 (1fcqA)R176 because D (zeta) conformation "forbidden" or filtered. T0547 100 :L 1fcqA 175 :M T0547 102 :KDYNYGL 1fcqA 177 :PAANWGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30347 # 1yt8A.101.278 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G107 (1yt8A)L285 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1yt8A)D287 because N (gamma') conformation "forbidden" or filtered. T0547 101 :GKDYNY 1yt8A 279 :HDRTTY T0547 108 :L 1yt8A 286 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=30349 # 1a8y.101.64 read from T0547.t2k.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)G101 (1a8y)L65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1a8y)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1a8y)G71 because P (beta_P) conformation "forbidden" or filtered. T0547 102 :KDY 1a8y 66 :EDK T0547 106 :Y 1a8y 70 :V T0547 108 :LE 1a8y 72 :FG Number of specific fragments extracted= 3 number of extra gaps= 3 total=30352 # 1gxjA.101.25 read from T0547.t2k.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G107 (1gxjA)L516 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1gxjA)D518 because Y (epsilon') conformation "forbidden" or filtered. T0547 101 :GKDYNY 1gxjA 510 :KERFPG T0547 108 :L 1gxjA 517 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=30354 # 2a6aA.101.92 read from T0547.t2k.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)N105 (2a6aA)D85 because L (left) conformation "forbidden" or filtered. T0547 101 :GKDY 2a6aA 81 :VSPY T0547 106 :YGLE 2a6aA 86 :IPVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30356 1vp4A expands to /projects/compbio/data/pdb/1vp4.pdb.gz 1vp4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 706, because occupancy 0.500 <= existing 0.500 in 1vp4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 708, because occupancy 0.500 <= existing 0.500 in 1vp4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 710, because occupancy 0.500 <= existing 0.500 in 1vp4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 712, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 769, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 771, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 775, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 777, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 844, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 846, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 987, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 989, because occupancy 0.500 <= existing 0.500 in 1vp4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2202, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 2204, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 2206, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 2208, because occupancy 0.500 <= existing 0.500 in 1vp4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3064, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 3066, because occupancy 0.500 <= existing 0.500 in 1vp4A # 1vp4A.101.106 read from T0547.t2k.many.frag # adding 1vp4A to template set # found chain 1vp4A in template set Warning: unaligning (T0547)G101 (1vp4A)L95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1vp4A)I101 because E (beta_S) conformation "forbidden" or filtered. T0547 102 :KDYNY 1vp4A 96 :DEDNL T0547 108 :LE 1vp4A 102 :FT Number of specific fragments extracted= 2 number of extra gaps= 2 total=30358 # 1w5qA.101.118 read from T0547.t2k.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)G107 (1w5qA)I125 because E (beta_S) conformation "forbidden" or filtered. T0547 101 :GKDYNY 1w5qA 119 :FPELGI T0547 108 :LE 1w5qA 126 :TD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30360 # 1wdaA.101.333 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)N105 (1wdaA)K331 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1wdaA)K333 because P (beta_P) conformation "forbidden" or filtered. T0547 101 :GKDY 1wdaA 327 :AMKA T0547 106 :Y 1wdaA 332 :C T0547 108 :LE 1wdaA 334 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=30363 # 1mla.101.80 read from T0547.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0547)D103 (1mla)K83 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1mla)P85 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 101 :GK 1mla 81 :GG T0547 104 :Y 1mla 84 :A T0547 106 :Y 1mla 86 :A T0547 108 :L 1mla 88 :M Number of specific fragments extracted= 4 number of extra gaps= 4 total=30367 # 1ki9A.101.26 read from T0547.t2k.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)N105 (1ki9A)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1ki9A)N33 because D (zeta) conformation "forbidden" or filtered. T0547 101 :GKDY 1ki9A 27 :LSEE T0547 106 :Y 1ki9A 32 :I T0547 108 :LE 1ki9A 34 :YK Number of specific fragments extracted= 3 number of extra gaps= 2 total=30370 # 1ze3D.101.96 read from T0547.t2k.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)G101 (1ze3D)V97 because D (zeta) conformation "forbidden" or filtered. T0547 102 :KDYNYGLE 1ze3D 98 :QDATAHLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=30371 # 1r0mA.101.186 read from T0547.t2k.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)N105 (1r0mA)R191 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1r0mA)T193 because E (beta_S) conformation "forbidden" or filtered. T0547 101 :GKDY 1r0mA 187 :FPDI T0547 106 :Y 1r0mA 192 :L T0547 108 :LE 1r0mA 194 :VD Number of specific fragments extracted= 3 number of extra gaps= 2 total=30374 # 1qf5A.101.120 read from T0547.t2k.many.frag # found chain 1qf5A in template set T0547 101 :GKDYNYGLE 1qf5A 121 :RGAKAIGTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30375 # 1rcqA.101.47 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G107 (1rcqA)G54 because Y (epsilon') conformation "forbidden" or filtered. T0547 101 :GKDYNY 1rcqA 48 :LAAEAD T0547 108 :LE 1rcqA 55 :FA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30377 # 1moq.101.76 read from T0547.t2k.many.frag # found chain 1moq in training set Warning: unaligning (T0547)D103 (1moq)G319 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1moq)P321 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1moq)D323 because E (beta_S) conformation "forbidden" or filtered. T0547 101 :GK 1moq 317 :LA T0547 104 :Y 1moq 320 :I T0547 106 :Y 1moq 322 :C T0547 108 :LE 1moq 324 :VE Number of specific fragments extracted= 4 number of extra gaps= 3 total=30381 # 2b8nA.101.71 read from T0547.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K102 (2b8nA)G61 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (2b8nA)V68 because E (beta_S) conformation "forbidden" or filtered. T0547 101 :G 2b8nA 60 :L T0547 103 :DYNYGL 2b8nA 62 :KKIRKG Number of specific fragments extracted= 2 number of extra gaps= 2 total=30383 # 1jx4A.101.91 read from T0547.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)G107 (1jx4A)K98 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1jx4A)E100 because D (zeta) conformation "forbidden" or filtered. T0547 101 :GKDYNY 1jx4A 92 :LREYSE T0547 108 :L 1jx4A 99 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=30385 # 1lc5A.101.71 read from T0547.t2k.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)G101 (1lc5A)H72 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (1lc5A)V74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1lc5A)W78 because G (3-10) conformation "forbidden" or filtered. T0547 102 :K 1lc5A 73 :Q T0547 104 :YNY 1lc5A 75 :PAS T0547 108 :LE 1lc5A 79 :IL Number of specific fragments extracted= 3 number of extra gaps= 3 total=30388 # 1onwA.101.77 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)G101 (1onwA)A78 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1onwA)T84 because P (beta_P) conformation "forbidden" or filtered. T0547 102 :KDYNY 1onwA 79 :GPTTR T0547 108 :LE 1onwA 85 :PE Number of specific fragments extracted= 2 number of extra gaps= 2 total=30390 # 1tca.101.93 read from T0547.t2k.many.frag # found chain 1tca in training set Warning: unaligning (T0547)G101 (1tca)S94 because G (3-10) conformation "forbidden" or filtered. T0547 102 :KDYNYGLE 1tca 95 :GNNKLPVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30391 # 1va6A.101.439 read from T0547.t2k.many.frag # found chain 1va6A in template set T0547 101 :GKDYNYGLE 1va6A 440 :FDNPDLTFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30392 # 1ylqA.101.63 read from T0547.t2k.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)K102 (1ylqA)F62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1ylqA)E67 because E (beta_S) conformation "forbidden" or filtered. T0547 101 :G 1ylqA 61 :F T0547 103 :DYNY 1ylqA 63 :DSPF T0547 108 :LE 1ylqA 68 :FH Number of specific fragments extracted= 3 number of extra gaps= 2 total=30395 # 1vlpA.101.271 read from T0547.t2k.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)G101 (1vlpA)F260 because G (3-10) conformation "forbidden" or filtered. T0547 102 :KDYNYGLE 1vlpA 261 :GAKNAGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30396 # 1h4gA.101.147 read from T0547.t2k.many.frag # found chain 1h4gA in training set Warning: unaligning (T0547)G101 (1h4gA)R148 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1h4gA)R152 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L108 (1h4gA)G155 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :KDY 1h4gA 149 :RSK T0547 106 :YG 1h4gA 153 :TS T0547 109 :E 1h4gA 156 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=30399 # 1dg9A.101.33 read from T0547.t2k.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)G107 (1dg9A)V40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1dg9A)D42 because Y (epsilon') conformation "forbidden" or filtered. T0547 101 :GKDYNY 1dg9A 34 :NISDNW T0547 108 :L 1dg9A 41 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=30401 # 1zc6A.101.97 read from T0547.t2k.many.frag # found chain 1zc6A in template set T0547 101 :GKDYNYGLE 1zc6A 98 :QAPGFARLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30402 # 1px5A.101.110 read from T0547.t2k.many.frag # found chain 1px5A in training set Warning: unaligning (T0547)E109 (1px5A)E119 because D (zeta) conformation "forbidden" or filtered. T0547 101 :GKDYNYGL 1px5A 111 :EQKFKVTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=30403 # 1pot.101.48 read from T0547.t2k.many.frag # found chain 1pot in training set Warning: unaligning (T0547)G101 because of BadResidue code BAD_PEPTIDE in next template residue (1pot)K73 Warning: unaligning (T0547)K102 because of BadResidue code BAD_PEPTIDE at template residue (1pot)K73 Warning: unaligning (T0547)N105 because of BadResidue code BAD_PEPTIDE in next template residue (1pot)Y77 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE at template residue (1pot)Y77 T0547 103 :DY 1pot 74 :DG T0547 107 :GLE 1pot 78 :DLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=30405 # 1thtA.101.102 read from T0547.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)K102 (1thtA)G104 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1thtA)G109 because E (beta_S) conformation "forbidden" or filtered. T0547 101 :G 1thtA 103 :K T0547 103 :DYNY 1thtA 105 :TQNI T0547 108 :LE 1thtA 110 :LI Number of specific fragments extracted= 3 number of extra gaps= 2 total=30408 # 1qgoA.101.32 read from T0547.t2k.many.frag # found chain 1qgoA in template set Warning: unaligning (T0547)G107 (1qgoA)F39 because E (beta_S) conformation "forbidden" or filtered. T0547 101 :GKDYNY 1qgoA 33 :CPDRDL T0547 108 :LE 1qgoA 40 :RA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30410 # 1jixA.101.29 read from T0547.t2k.many.frag # found chain 1jixA in training set T0547 101 :GKDYNYGLE 1jixA 30 :ISEMGLNVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30411 # 1vp4A.102.107 read from T0547.t2k.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)K102 (1vp4A)D96 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNYGLEA 1vp4A 97 :EDNLIFTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=30412 # 1rcqA.102.48 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)Y104 (1rcqA)E51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :KD 1rcqA 49 :AA T0547 105 :NYGLE 1rcqA 52 :ADGFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=30414 # 1yt8A.102.279 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)D103 (1yt8A)R281 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1yt8A)L285 because N (gamma') conformation "forbidden" or filtered. T0547 102 :K 1yt8A 280 :D T0547 104 :YNY 1yt8A 282 :TTY T0547 108 :LEA 1yt8A 286 :LDV Number of specific fragments extracted= 3 number of extra gaps= 2 total=30417 # 1a8y.102.65 read from T0547.t2k.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)E109 (1a8y)G73 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :KDYNYGL 1a8y 66 :EDKGVGF T0547 110 :A 1a8y 74 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=30419 # 1gxjA.102.26 read from T0547.t2k.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)E109 (1gxjA)D518 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :KDYNYGL 1gxjA 511 :ERFPGLV T0547 110 :A 1gxjA 519 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=30421 # 2a6aA.102.93 read from T0547.t2k.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)N105 (2a6aA)D85 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (2a6aA)P87 because P (beta_P) conformation "forbidden" or filtered. T0547 102 :KDY 2a6aA 82 :SPY T0547 106 :Y 2a6aA 86 :I T0547 108 :LEA 2a6aA 88 :VAP Number of specific fragments extracted= 3 number of extra gaps= 2 total=30424 # 1ki9A.102.27 read from T0547.t2k.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)G107 (1ki9A)N33 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1ki9A)M36 because P (beta_P) conformation "forbidden" or filtered. T0547 102 :KDYNY 1ki9A 28 :SEEGI T0547 108 :LE 1ki9A 34 :YK Number of specific fragments extracted= 2 number of extra gaps= 2 total=30426 # 1wdaA.102.334 read from T0547.t2k.many.frag # found chain 1wdaA in template set T0547 102 :KDYNYGLEA 1wdaA 328 :MKAKCKLTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30427 # 1onwA.102.78 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)E109 (1onwA)E86 because P (beta_P) conformation "forbidden" or filtered. T0547 102 :KDYNYGL 1onwA 79 :GPTTRTP T0547 110 :A 1onwA 87 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=30429 # 1zc6A.102.98 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)K102 (1zc6A)A99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1zc6A)F102 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DY 1zc6A 100 :PG T0547 106 :YGLEA 1zc6A 103 :ARLSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=30431 # 1h4gA.102.148 read from T0547.t2k.many.frag # found chain 1h4gA in training set T0547 102 :KDYNYGLEA 1h4gA 149 :RSKRTSGTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30432 # 1mla.102.81 read from T0547.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0547)K102 (1mla)G82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNY 1mla 83 :KAPA T0547 108 :L 1mla 88 :M T0547 110 :A 1mla 90 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=30435 # 2b8nA.102.72 read from T0547.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K102 (2b8nA)G61 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (2b8nA)I64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (2b8nA)V68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (2b8nA)V69 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DY 2b8nA 62 :KK T0547 106 :YGL 2b8nA 65 :RKG Number of specific fragments extracted= 2 number of extra gaps= 3 total=30437 # 1jx4A.102.92 read from T0547.t2k.many.frag # found chain 1jx4A in training set T0547 102 :KDYNYGLEA 1jx4A 93 :REYSEKIEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30438 # 1qf5A.102.121 read from T0547.t2k.many.frag # found chain 1qf5A in template set Warning: unaligning (T0547)A110 (1qf5A)G130 because L (left) conformation "forbidden" or filtered. T0547 102 :KDYNYGLE 1qf5A 122 :GAKAIGTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=30439 # 1vlpA.102.272 read from T0547.t2k.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)E109 (1vlpA)A268 because P (beta_P) conformation "forbidden" or filtered. T0547 102 :KDYNYGL 1vlpA 261 :GAKNAGL T0547 110 :A 1vlpA 269 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=30441 # 1w5qA.102.119 read from T0547.t2k.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)G107 (1w5qA)I125 because E (beta_S) conformation "forbidden" or filtered. T0547 102 :KDYNY 1w5qA 120 :PELGI T0547 108 :LEA 1w5qA 126 :TDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30443 # 1zbsA.102.85 read from T0547.t2k.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)E109 (1zbsA)E93 because E (beta_S) conformation "forbidden" or filtered. T0547 102 :KDYNYGL 1zbsA 86 :LPHCDRI T0547 110 :A 1zbsA 94 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=30445 # 1pot.102.49 read from T0547.t2k.many.frag # found chain 1pot in training set Warning: unaligning (T0547)K102 because of BadResidue code BAD_PEPTIDE at template residue (1pot)K73 Warning: unaligning (T0547)N105 because of BadResidue code BAD_PEPTIDE in next template residue (1pot)Y77 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE at template residue (1pot)Y77 Warning: unaligning (T0547)E109 (1pot)V80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1pot)V81 because D (zeta) conformation "forbidden" or filtered. T0547 103 :DY 1pot 74 :DG T0547 107 :GL 1pot 78 :DL Number of specific fragments extracted= 2 number of extra gaps= 3 total=30447 # 1ox0A.102.83 read from T0547.t2k.many.frag # found chain 1ox0A in training set T0547 102 :KDYNYGLEA 1ox0A 65 :KKDTNRFDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30448 # 1lc5A.102.72 read from T0547.t2k.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)K102 (1lc5A)Q73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1lc5A)W78 because G (3-10) conformation "forbidden" or filtered. T0547 103 :DYNY 1lc5A 74 :VPAS T0547 108 :LEA 1lc5A 79 :ILA Number of specific fragments extracted= 2 number of extra gaps= 2 total=30450 # 1tca.102.94 read from T0547.t2k.many.frag # found chain 1tca in training set T0547 102 :KDYNYGLEA 1tca 95 :GNNKLPVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30451 2ae0X expands to /projects/compbio/data/pdb/2ae0.pdb.gz 2ae0X:# 2ae0X.102.75 read from T0547.t2k.many.frag # adding 2ae0X to template set # found chain 2ae0X in template set T0547 102 :KDYNYGLEA 2ae0X 76 :NMRQFGIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30452 # 1yxyA.102.46 read from T0547.t2k.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)Y106 (1yxyA)V51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1yxyA)G52 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :KDYN 1yxyA 47 :EAGA T0547 108 :LEA 1yxyA 53 :IRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30454 # 1px5A.102.111 read from T0547.t2k.many.frag # found chain 1px5A in training set Warning: unaligning (T0547)E109 (1px5A)E119 because D (zeta) conformation "forbidden" or filtered. T0547 102 :KDYNYGL 1px5A 112 :QKFKVTF T0547 110 :A 1px5A 120 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=30456 # 1jixA.102.30 read from T0547.t2k.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)G107 (1jixA)N36 because N (gamma') conformation "forbidden" or filtered. T0547 102 :KDYNY 1jixA 31 :SEMGL T0547 108 :LEA 1jixA 37 :VDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30458 1rp4A expands to /projects/compbio/data/pdb/1rp4.pdb.gz 1rp4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1rp4A.102.62 read from T0547.t2k.many.frag # adding 1rp4A to template set # found chain 1rp4A in template set Warning: unaligning (T0547)K102 (1rp4A)L101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (1rp4A)N102 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y104 (1rp4A)R103 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1rp4A)S106 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1rp4A)V109 because S (epsilon) conformation "forbidden" or filtered. T0547 105 :NY 1rp4A 104 :AC T0547 108 :LE 1rp4A 107 :VD Number of specific fragments extracted= 2 number of extra gaps= 3 total=30460 # 1qgoA.102.33 read from T0547.t2k.many.frag # found chain 1qgoA in template set T0547 102 :KDYNYGLEA 1qgoA 34 :PDRDLFRAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30461 # 1ylqA.102.64 read from T0547.t2k.many.frag # found chain 1ylqA in template set T0547 102 :KDYNYGLEA 1ylqA 62 :FDSPFEFHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30462 # 1thtA.102.103 read from T0547.t2k.many.frag # found chain 1thtA in template set T0547 102 :KDYNYGLEA 1thtA 104 :GTQNIGLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30463 # 1rcqA.103.49 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G107 (1rcqA)G54 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNY 1rcqA 50 :AEAD T0547 108 :LE 1rcqA 55 :FA T0547 111 :G 1rcqA 58 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=30466 # 1vp4A.103.108 read from T0547.t2k.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)G107 (1vp4A)I101 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1vp4A)G105 because S (epsilon) conformation "forbidden" or filtered. T0547 103 :DYNY 1vp4A 97 :EDNL T0547 108 :LEA 1vp4A 102 :FTV Number of specific fragments extracted= 2 number of extra gaps= 2 total=30468 # 1zc6A.103.99 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)D103 (1zc6A)P100 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1zc6A)R104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1zc6A)A108 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNY 1zc6A 101 :GFA T0547 108 :LEA 1zc6A 105 :LSL Number of specific fragments extracted= 2 number of extra gaps= 3 total=30470 # 1ki9A.103.28 read from T0547.t2k.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)G107 (1ki9A)N33 because D (zeta) conformation "forbidden" or filtered. T0547 103 :DYNY 1ki9A 29 :EEGI T0547 108 :LEAG 1ki9A 34 :YKMV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30472 # 7odcA.103.81 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G107 (7odcA)G86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (7odcA)D88 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (7odcA)A90 because G (3-10) conformation "forbidden" or filtered. T0547 103 :DYNY 7odcA 82 :AIGT T0547 108 :L 7odcA 87 :F T0547 110 :A 7odcA 89 :C Number of specific fragments extracted= 3 number of extra gaps= 3 total=30475 # 1yt8A.103.280 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G107 (1yt8A)L285 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1yt8A)D287 because N (gamma') conformation "forbidden" or filtered. T0547 103 :DYNY 1yt8A 281 :RTTY T0547 108 :L 1yt8A 286 :L T0547 110 :AG 1yt8A 288 :VR Number of specific fragments extracted= 3 number of extra gaps= 2 total=30478 # 1gxjA.103.27 read from T0547.t2k.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G107 (1gxjA)L516 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1gxjA)D518 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNY 1gxjA 512 :RFPG T0547 108 :L 1gxjA 517 :V T0547 110 :AG 1gxjA 519 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=30481 # 2a6aA.103.94 read from T0547.t2k.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)Y104 (2a6aA)Y84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (2a6aA)L91 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :D 2a6aA 83 :P T0547 105 :NYGLEA 2a6aA 85 :DIPVAP Number of specific fragments extracted= 2 number of extra gaps= 2 total=30483 # 1wdaA.103.335 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G107 (1wdaA)K333 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DYNY 1wdaA 329 :KAKC T0547 108 :LEAG 1wdaA 334 :LTIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=30485 # 1a8y.103.66 read from T0547.t2k.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)N105 (1a8y)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1a8y)G73 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DY 1a8y 67 :DK T0547 106 :YGL 1a8y 70 :VGF T0547 110 :AG 1a8y 74 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=30488 # 1zbsA.103.86 read from T0547.t2k.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)Y104 (1zbsA)H88 because G (3-10) conformation "forbidden" or filtered. T0547 103 :D 1zbsA 87 :P T0547 105 :NYGLEAG 1zbsA 89 :CDRIEVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30490 # 1jixA.103.31 read from T0547.t2k.many.frag # found chain 1jixA in training set T0547 103 :DYNYGLEAG 1jixA 32 :EMGLNVDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=30491 # 1mla.103.82 read from T0547.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1mla)H91 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DYNY 1mla 83 :KAPA T0547 108 :L 1mla 88 :M T0547 110 :A 1mla 90 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=30494 # 1jx4A.103.93 read from T0547.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)N105 (1jx4A)S96 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DY 1jx4A 94 :EY T0547 106 :YGLEAG 1jx4A 97 :EKIEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30496 1izoA expands to /projects/compbio/data/pdb/1izo.pdb.gz 1izoA:# 1izoA.103.40 read from T0547.t2k.many.frag # adding 1izoA to template set # found chain 1izoA in template set Warning: unaligning (T0547)Y104 (1izoA)L42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1izoA)M49 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :D 1izoA 41 :L T0547 105 :NYGLEA 1izoA 43 :GKNFIC Number of specific fragments extracted= 2 number of extra gaps= 2 total=30498 # 1ox0A.103.84 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)G107 (1ox0A)R70 because G (3-10) conformation "forbidden" or filtered. T0547 103 :DYNY 1ox0A 66 :KDTN T0547 108 :LEAG 1ox0A 71 :FDNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30500 1sdeA expands to /projects/compbio/data/pdb/1sde.pdb.gz 1sdeA:Skipped atom 186, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 188, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 190, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 192, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 194, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 196, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 198, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 200, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 202, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 204, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 381, because occupancy 0.280 <= existing 0.720 in 1sdeA Skipped atom 383, because occupancy 0.280 <= existing 0.720 in 1sdeA Skipped atom 385, because occupancy 0.280 <= existing 0.720 in 1sdeA Skipped atom 387, because occupancy 0.280 <= existing 0.720 in 1sdeA Skipped atom 389, because occupancy 0.280 <= existing 0.720 in 1sdeA Skipped atom 391, because occupancy 0.280 <= existing 0.720 in 1sdeA Skipped atom 649, because occupancy 0.180 <= existing 0.820 in 1sdeA Skipped atom 651, because occupancy 0.180 <= existing 0.820 in 1sdeA Skipped atom 653, because occupancy 0.180 <= existing 0.820 in 1sdeA Skipped atom 655, because occupancy 0.180 <= existing 0.820 in 1sdeA Skipped atom 657, because occupancy 0.180 <= existing 0.820 in 1sdeA Skipped atom 659, because occupancy 0.180 <= existing 0.820 in 1sdeA Skipped atom 1000, because occupancy 0.320 <= existing 0.680 in 1sdeA Skipped atom 1002, because occupancy 0.320 <= existing 0.680 in 1sdeA Skipped atom 1004, because occupancy 0.320 <= existing 0.680 in 1sdeA Skipped atom 1006, because occupancy 0.320 <= existing 0.680 in 1sdeA Skipped atom 1008, because occupancy 0.320 <= existing 0.680 in 1sdeA Skipped atom 1070, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1072, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1074, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1076, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1078, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1080, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1082, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1084, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1086, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1088, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1090, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1121, because occupancy 0.190 <= existing 0.810 in 1sdeA Skipped atom 1123, because occupancy 0.190 <= existing 0.810 in 1sdeA Skipped atom 1125, because occupancy 0.190 <= existing 0.810 in 1sdeA Skipped atom 1127, because occupancy 0.190 <= existing 0.810 in 1sdeA Skipped atom 1169, because occupancy 0.350 <= existing 0.650 in 1sdeA Skipped atom 1171, because occupancy 0.350 <= existing 0.650 in 1sdeA Skipped atom 1179, because occupancy 0.290 <= existing 0.700 in 1sdeA Skipped atom 1181, because occupancy 0.290 <= existing 0.700 in 1sdeA Skipped atom 1183, because occupancy 0.290 <= existing 0.700 in 1sdeA Skipped atom 1185, because occupancy 0.290 <= existing 0.700 in 1sdeA Skipped atom 1187, because occupancy 0.290 <= existing 0.700 in 1sdeA Skipped atom 1267, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1269, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1271, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1273, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1275, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1278, because occupancy 0.460 <= existing 0.540 in 1sdeA Skipped atom 1280, because occupancy 0.460 <= existing 0.540 in 1sdeA Skipped atom 1282, because occupancy 0.460 <= existing 0.540 in 1sdeA Skipped atom 1284, because occupancy 0.460 <= existing 0.540 in 1sdeA Skipped atom 1286, because occupancy 0.460 <= existing 0.540 in 1sdeA Skipped atom 1288, because occupancy 0.460 <= existing 0.540 in 1sdeA Skipped atom 1290, because occupancy 0.460 <= existing 0.540 in 1sdeA Skipped atom 1342, because occupancy 0.370 <= existing 0.630 in 1sdeA Skipped atom 1344, because occupancy 0.370 <= existing 0.630 in 1sdeA Skipped atom 1346, because occupancy 0.370 <= existing 0.630 in 1sdeA Skipped atom 1348, because occupancy 0.370 <= existing 0.630 in 1sdeA Skipped atom 1350, because occupancy 0.370 <= existing 0.630 in 1sdeA Skipped atom 1352, because occupancy 0.370 <= existing 0.630 in 1sdeA Skipped atom 1354, because occupancy 0.370 <= existing 0.630 in 1sdeA Skipped atom 1982, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1984, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1986, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1988, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1990, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 2107, because occupancy 0.260 <= existing 0.740 in 1sdeA Skipped atom 2109, because occupancy 0.260 <= existing 0.740 in 1sdeA Skipped atom 2111, because occupancy 0.260 <= existing 0.740 in 1sdeA Skipped atom 2113, because occupancy 0.260 <= existing 0.740 in 1sdeA Skipped atom 2115, because occupancy 0.260 <= existing 0.740 in 1sdeA Skipped atom 2362, because occupancy 0.310 <= existing 0.690 in 1sdeA Skipped atom 2364, because occupancy 0.310 <= existing 0.690 in 1sdeA Skipped atom 2366, because occupancy 0.310 <= existing 0.690 in 1sdeA Skipped atom 2368, because occupancy 0.310 <= existing 0.690 in 1sdeA Skipped atom 2370, because occupancy 0.310 <= existing 0.690 in 1sdeA Skipped atom 2372, because occupancy 0.310 <= existing 0.690 in 1sdeA Skipped atom 2505, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 2507, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 2509, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 2511, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 2513, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 2515, because occupancy 0.270 <= existing 0.730 in 1sdeA # 1sdeA.103.233 read from T0547.t2k.many.frag # adding 1sdeA to template set # found chain 1sdeA in template set Warning: unaligning (T0547)A110 (1sdeA)I241 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DYNYGLE 1sdeA 234 :AQSAGAV T0547 111 :G 1sdeA 242 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=30502 # 1h4gA.103.149 read from T0547.t2k.many.frag # found chain 1h4gA in training set Warning: unaligning (T0547)G107 (1h4gA)S154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L108 (1h4gA)G155 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNY 1h4gA 150 :SKRT T0547 109 :EAG 1h4gA 156 :TIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30504 # 2ae0X.103.76 read from T0547.t2k.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)E109 (2ae0X)D83 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (2ae0X)W85 because N (gamma') conformation "forbidden" or filtered. T0547 103 :DYNYGL 2ae0X 77 :MRQFGI T0547 110 :A 2ae0X 84 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=30506 # 1qf5A.103.122 read from T0547.t2k.many.frag # found chain 1qf5A in template set Warning: unaligning (T0547)N105 (1qf5A)A125 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DY 1qf5A 123 :AK T0547 106 :YGLEAG 1qf5A 126 :IGTTGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=30508 # 1thtA.103.104 read from T0547.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)G107 (1thtA)G109 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1thtA)I111 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DYNY 1thtA 105 :TQNI T0547 108 :L 1thtA 110 :L T0547 110 :AG 1thtA 112 :AA Number of specific fragments extracted= 3 number of extra gaps= 2 total=30511 1xp8A expands to /projects/compbio/data/pdb/1xp8.pdb.gz 1xp8A:# 1xp8A.103.46 read from T0547.t2k.many.frag # adding 1xp8A to template set # found chain 1xp8A in template set Warning: unaligning (T0547)G107 (1xp8A)D48 because N (gamma') conformation "forbidden" or filtered. T0547 103 :DYNY 1xp8A 44 :ESKL T0547 108 :LEAG 1xp8A 49 :VQVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30513 # 1onwA.103.79 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)G111 (1onwA)A88 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DYNYGLEA 1onwA 80 :PTTRTPEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=30514 # 1jr2A.103.111 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G107 (1jr2A)S95 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DYNY 1jr2A 91 :WNAK T0547 108 :LEAG 1jr2A 96 :VYVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30516 # 1lucA.103.30 read from T0547.t2k.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)G111 (1lucA)V39 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DYNYGLEA 1lucA 31 :SEGCGFDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=30517 # 1tca.103.95 read from T0547.t2k.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D103 (1tca)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1tca)P100 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :YNY 1tca 97 :NKL T0547 108 :LEAG 1tca 101 :VLTW Number of specific fragments extracted= 2 number of extra gaps= 2 total=30519 # 1knwA.103.66 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N105 (1knwA)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 103 :DY 1knwA 67 :EQ T0547 106 :YGLEAG 1knwA 70 :VKVDSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30521 # 1ylqA.103.65 read from T0547.t2k.many.frag # found chain 1ylqA in template set T0547 103 :DYNYGLEAG 1ylqA 63 :DSPFEFHIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30522 # 1yxyA.103.47 read from T0547.t2k.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)Y104 (1yxyA)G49 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1yxyA)N56 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :D 1yxyA 48 :A T0547 105 :NYGLEA 1yxyA 50 :AVGIRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=30524 # 1pot.103.50 read from T0547.t2k.many.frag # found chain 1pot in training set Warning: unaligning (T0547)N105 because of BadResidue code BAD_PEPTIDE in next template residue (1pot)Y77 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE at template residue (1pot)Y77 Warning: unaligning (T0547)A110 (1pot)V81 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1pot)P82 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DY 1pot 74 :DG T0547 107 :GLE 1pot 78 :DLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=30526 # 1rcqA.104.50 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N105 (1rcqA)A52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :Y 1rcqA 51 :E T0547 106 :YGLE 1rcqA 53 :DGFA T0547 111 :G 1rcqA 58 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=30529 # 7odcA.104.82 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y104 (7odcA)I83 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (7odcA)G84 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (7odcA)A90 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (7odcA)S91 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGLEA 7odcA 85 :TGFDC Number of specific fragments extracted= 1 number of extra gaps= 2 total=30530 # 1vp4A.104.109 read from T0547.t2k.many.frag # found chain 1vp4A in template set T0547 104 :YNYGLEAGS 1vp4A 98 :DNLIFTVGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30531 # 1zc6A.104.100 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)A110 (1zc6A)L107 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1zc6A)A108 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNYGLE 1zc6A 101 :GFARLS T0547 112 :S 1zc6A 109 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=30533 # 1ki9A.104.29 read from T0547.t2k.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)Y104 (1ki9A)E30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1ki9A)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 106 :YGLEAGS 1ki9A 32 :INYKMVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=30534 # 1gxjA.104.28 read from T0547.t2k.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G107 (1gxjA)L516 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1gxjA)D518 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNY 1gxjA 513 :FPG T0547 108 :L 1gxjA 517 :V T0547 110 :AGS 1gxjA 519 :VVS Number of specific fragments extracted= 3 number of extra gaps= 2 total=30537 # 1izoA.104.41 read from T0547.t2k.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)S112 (1izoA)T50 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNYGLEAG 1izoA 42 :LGKNFICM Number of specific fragments extracted= 1 number of extra gaps= 1 total=30538 # 1yt8A.104.281 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G107 (1yt8A)L285 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1yt8A)R289 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :YNY 1yt8A 282 :TTY T0547 108 :LEA 1yt8A 286 :LDV T0547 112 :S 1yt8A 290 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=30541 # 1jixA.104.32 read from T0547.t2k.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)G107 (1jixA)N36 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1jixA)D38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1jixA)S41 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNY 1jixA 33 :MGL T0547 108 :L 1jixA 37 :V T0547 110 :AG 1jixA 39 :II Number of specific fragments extracted= 3 number of extra gaps= 3 total=30544 # 1wdaA.104.336 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)Y104 (1wdaA)A330 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1wdaA)C337 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1wdaA)P338 because P (beta_P) conformation "forbidden" or filtered. T0547 105 :NYGLEA 1wdaA 331 :KCKLTI Number of specific fragments extracted= 1 number of extra gaps= 2 total=30545 # 1knwA.104.67 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G111 (1knwA)V75 because G (3-10) conformation "forbidden" or filtered. T0547 104 :YNYGLEA 1knwA 68 :QGVKVDS T0547 112 :S 1knwA 76 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=30547 # 1xp8A.104.47 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)E109 (1xp8A)Q50 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :YNYGL 1xp8A 45 :SKLDV T0547 110 :AGS 1xp8A 51 :VVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30549 # 2a6aA.104.95 read from T0547.t2k.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)N105 (2a6aA)D85 because L (left) conformation "forbidden" or filtered. T0547 104 :Y 2a6aA 84 :Y T0547 106 :YGLEAGS 2a6aA 86 :IPVAPLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30551 # 1sdeA.104.234 read from T0547.t2k.many.frag # found chain 1sdeA in template set T0547 104 :YNYGLEAGS 1sdeA 235 :QSAGAVISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30552 # 1ox0A.104.85 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)G107 (1ox0A)R70 because G (3-10) conformation "forbidden" or filtered. T0547 104 :YNY 1ox0A 67 :DTN T0547 108 :LEAGS 1ox0A 71 :FDNYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30554 # 1zbsA.104.87 read from T0547.t2k.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)E109 (1zbsA)E93 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1zbsA)G96 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :YNYGL 1zbsA 88 :HCDRI T0547 110 :AG 1zbsA 94 :VA Number of specific fragments extracted= 2 number of extra gaps= 2 total=30556 # 1jx4A.104.94 read from T0547.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)E109 (1jx4A)E100 because D (zeta) conformation "forbidden" or filtered. T0547 104 :YNYGL 1jx4A 95 :YSEKI T0547 110 :AGS 1jx4A 101 :IAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30558 # 1mla.104.83 read from T0547.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1mla)S92 because S (epsilon) conformation "forbidden" or filtered. T0547 104 :YNY 1mla 84 :APA T0547 108 :L 1mla 88 :M T0547 110 :AG 1mla 90 :GH Number of specific fragments extracted= 3 number of extra gaps= 3 total=30561 # 1jr2A.104.112 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G111 (1jr2A)V99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1jr2A)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 104 :YNYGLEA 1jr2A 92 :NAKSVYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=30562 # 1twdA.104.30 read from T0547.t2k.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)L108 (1twdA)G35 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1twdA)L36 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1twdA)T37 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :YNYG 1twdA 31 :PKEG T0547 111 :GS 1twdA 38 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30564 1wpoA expands to /projects/compbio/data/pdb/1wpo.pdb.gz 1wpoA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wpoA.104.126 read from T0547.t2k.many.frag # adding 1wpoA to template set # found chain 1wpoA in template set Warning: unaligning (T0547)A110 (1wpoA)L133 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wpoA)T153 T0547 104 :YNYGLE 1wpoA 127 :SYAGLS T0547 111 :G 1wpoA 134 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=30566 # 1yxyA.104.48 read from T0547.t2k.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)N105 (1yxyA)A50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1yxyA)R54 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1yxyA)S57 because S (epsilon) conformation "forbidden" or filtered. T0547 104 :Y 1yxyA 49 :G T0547 106 :YGL 1yxyA 51 :VGI T0547 110 :AG 1yxyA 55 :AN Number of specific fragments extracted= 3 number of extra gaps= 3 total=30569 # 1pot.104.51 read from T0547.t2k.many.frag # found chain 1pot in training set Warning: unaligning (T0547)N105 because of BadResidue code BAD_PEPTIDE in next template residue (1pot)Y77 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE at template residue (1pot)Y77 Warning: unaligning (T0547)G111 (1pot)P82 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :Y 1pot 75 :G T0547 107 :GLEA 1pot 78 :DLVV T0547 112 :S 1pot 83 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=30572 # 2ae0X.104.77 read from T0547.t2k.many.frag # found chain 2ae0X in template set T0547 104 :YNYGLEAGS 2ae0X 78 :RQFGIDAWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30573 # 1lucA.104.31 read from T0547.t2k.many.frag # found chain 1lucA in training set T0547 104 :YNYGLEAGS 1lucA 32 :EGCGFDTVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=30574 # 1thtA.104.105 read from T0547.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)G111 (1thtA)A113 because E (beta_S) conformation "forbidden" or filtered. T0547 104 :YNYGLEA 1thtA 106 :QNIGLIA T0547 112 :S 1thtA 114 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=30576 # 1tca.104.96 read from T0547.t2k.many.frag # found chain 1tca in training set T0547 104 :YNYGLEAGS 1tca 97 :NKLPVLTWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30577 1q79A expands to /projects/compbio/data/pdb/1q79.pdb.gz 1q79A:Bad short name: OD for alphabet: pdb_atoms # 1q79A.104.90 read from T0547.t2k.many.frag # adding 1q79A to template set # found chain 1q79A in template set Warning: unaligning (T0547)L108 (1q79A)G95 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1q79A)K96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1q79A)T99 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :YNYG 1q79A 91 :ENVG T0547 110 :AG 1q79A 97 :IF Number of specific fragments extracted= 2 number of extra gaps= 2 total=30579 # 1moq.104.79 read from T0547.t2k.many.frag # found chain 1moq in training set Warning: unaligning (T0547)E109 (1moq)E325 because E (beta_S) conformation "forbidden" or filtered. T0547 104 :YNYGL 1moq 320 :IPCDV T0547 110 :AGS 1moq 326 :IAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30581 1jpzA expands to /projects/compbio/data/pdb/1jpz.pdb.gz 1jpzA:Skipped atom 84, because occupancy 0.460 <= existing 0.540 in 1jpzA Skipped atom 86, because occupancy 0.460 <= existing 0.540 in 1jpzA Skipped atom 88, because occupancy 0.460 <= existing 0.540 in 1jpzA Skipped atom 90, because occupancy 0.460 <= existing 0.540 in 1jpzA Skipped atom 92, because occupancy 0.460 <= existing 0.540 in 1jpzA Skipped atom 94, because occupancy 0.460 <= existing 0.540 in 1jpzA Skipped atom 96, because occupancy 0.460 <= existing 0.540 in 1jpzA Skipped atom 98, because occupancy 0.460 <= existing 0.540 in 1jpzA Skipped atom 100, because occupancy 0.460 <= existing 0.540 in 1jpzA Skipped atom 234, because occupancy 0.440 <= existing 0.560 in 1jpzA Skipped atom 236, because occupancy 0.440 <= existing 0.560 in 1jpzA Skipped atom 238, because occupancy 0.440 <= existing 0.560 in 1jpzA Skipped atom 240, because occupancy 0.440 <= existing 0.560 in 1jpzA Skipped atom 242, because occupancy 0.440 <= existing 0.560 in 1jpzA Skipped atom 244, because occupancy 0.440 <= existing 0.560 in 1jpzA Skipped atom 246, because occupancy 0.440 <= existing 0.560 in 1jpzA Skipped atom 248, because occupancy 0.440 <= existing 0.560 in 1jpzA Skipped atom 250, because occupancy 0.440 <= existing 0.560 in 1jpzA Skipped atom 1513, because occupancy 0.500 <= existing 0.500 in 1jpzA Skipped atom 1515, because occupancy 0.500 <= existing 0.500 in 1jpzA Skipped atom 1517, because occupancy 0.500 <= existing 0.500 in 1jpzA Skipped atom 1519, because occupancy 0.500 <= existing 0.500 in 1jpzA Skipped atom 1521, because occupancy 0.500 <= existing 0.500 in 1jpzA Skipped atom 1523, because occupancy 0.500 <= existing 0.500 in 1jpzA Skipped atom 1525, because occupancy 0.500 <= existing 0.500 in 1jpzA Skipped atom 1527, because occupancy 0.500 <= existing 0.500 in 1jpzA Skipped atom 2996, because occupancy 0.470 <= existing 0.530 in 1jpzA Skipped atom 2998, because occupancy 0.470 <= existing 0.530 in 1jpzA Skipped atom 3000, because occupancy 0.470 <= existing 0.530 in 1jpzA Skipped atom 3002, because occupancy 0.470 <= existing 0.530 in 1jpzA Skipped atom 3004, because occupancy 0.470 <= existing 0.530 in 1jpzA Skipped atom 3006, because occupancy 0.470 <= existing 0.530 in 1jpzA Skipped atom 3008, because occupancy 0.470 <= existing 0.530 in 1jpzA Skipped atom 3010, because occupancy 0.470 <= existing 0.530 in 1jpzA Skipped atom 3012, because occupancy 0.470 <= existing 0.530 in 1jpzA # 1jpzA.104.65 read from T0547.t2k.many.frag # adding 1jpzA to template set # found chain 1jpzA in template set Warning: unaligning (T0547)G107 (1jpzA)R66 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1jpzA)N70 because E (beta_S) conformation "forbidden" or filtered. T0547 104 :YNY 1jpzA 63 :DES T0547 108 :LEA 1jpzA 67 :FDK T0547 112 :S 1jpzA 71 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=30584 # 7odcA.105.83 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N105 (7odcA)G84 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (7odcA)A90 because G (3-10) conformation "forbidden" or filtered. T0547 106 :YGLEA 7odcA 85 :TGFDC T0547 112 :SK 7odcA 91 :SK Number of specific fragments extracted= 2 number of extra gaps= 2 total=30586 # 1rcqA.105.51 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 105 :NYGLE 1rcqA 52 :ADGFA T0547 111 :G 1rcqA 58 :A T0547 113 :K 1rcqA 60 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=30589 # 1knwA.105.68 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N105 (1knwA)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1knwA)K71 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :Y 1knwA 70 :V T0547 108 :LEAGSK 1knwA 72 :VDSVSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=30591 # 1zc6A.105.101 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)N105 (1zc6A)F102 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1zc6A)R104 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :Y 1zc6A 103 :A T0547 108 :LEAGSK 1zc6A 105 :LSLATD Number of specific fragments extracted= 2 number of extra gaps= 2 total=30593 # 1vp4A.105.110 read from T0547.t2k.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)N105 (1vp4A)N99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1vp4A)G105 because S (epsilon) conformation "forbidden" or filtered. T0547 106 :YGLEA 1vp4A 100 :LIFTV T0547 112 :SK 1vp4A 106 :SQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=30595 # 1jixA.105.33 read from T0547.t2k.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)A110 (1jixA)I39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1jixA)I40 because E (beta_S) conformation "forbidden" or filtered. T0547 105 :NYGLE 1jixA 34 :GLNVD T0547 112 :SK 1jixA 41 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30597 # 1yt8A.105.282 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G107 (1yt8A)L285 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1yt8A)R289 because P (beta_P) conformation "forbidden" or filtered. T0547 105 :NY 1yt8A 283 :TY T0547 108 :LEA 1yt8A 286 :LDV T0547 112 :SK 1yt8A 290 :TP Number of specific fragments extracted= 3 number of extra gaps= 2 total=30600 # 1izoA.105.42 read from T0547.t2k.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)S112 (1izoA)T50 because Y (epsilon') conformation "forbidden" or filtered. T0547 105 :NYGLEAG 1izoA 43 :GKNFICM T0547 113 :K 1izoA 51 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=30602 # 1ki9A.105.30 read from T0547.t2k.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)G107 (1ki9A)N33 because D (zeta) conformation "forbidden" or filtered. T0547 105 :NY 1ki9A 31 :GI T0547 108 :LEAGSK 1ki9A 34 :YKMVNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30604 # 1xp8A.105.48 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)N105 (1xp8A)K46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1xp8A)D48 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1xp8A)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :Y 1xp8A 47 :L T0547 108 :LEA 1xp8A 49 :VQV T0547 112 :SK 1xp8A 53 :ST Number of specific fragments extracted= 3 number of extra gaps= 3 total=30607 # 1wdaA.105.337 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G107 (1wdaA)K333 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1wdaA)C337 because E (beta_S) conformation "forbidden" or filtered. T0547 105 :NY 1wdaA 331 :KC T0547 108 :LEA 1wdaA 334 :LTI T0547 112 :SK 1wdaA 338 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=30610 # 1sdeA.105.235 read from T0547.t2k.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)A110 (1sdeA)I241 because E (beta_S) conformation "forbidden" or filtered. T0547 105 :NYGLE 1sdeA 236 :SAGAV T0547 111 :GSK 1sdeA 242 :SST Number of specific fragments extracted= 2 number of extra gaps= 1 total=30612 1pzxA expands to /projects/compbio/data/pdb/1pzx.pdb.gz 1pzxA:# 1pzxA.105.117 read from T0547.t2k.many.frag # adding 1pzxA to template set # found chain 1pzxA in template set Warning: unaligning (T0547)N105 (1pzxA)I116 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1pzxA)D118 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1pzxA)K120 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1pzxA)A122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1pzxA)S123 because S (epsilon) conformation "forbidden" or filtered. T0547 106 :Y 1pzxA 117 :I T0547 108 :L 1pzxA 119 :S T0547 110 :A 1pzxA 121 :C T0547 113 :K 1pzxA 124 :L Number of specific fragments extracted= 4 number of extra gaps= 4 total=30616 # 1gxjA.105.29 read from T0547.t2k.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G107 (1gxjA)L516 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1gxjA)V519 because P (beta_P) conformation "forbidden" or filtered. T0547 105 :NY 1gxjA 514 :PG T0547 108 :LE 1gxjA 517 :VD T0547 111 :GSK 1gxjA 520 :VSN Number of specific fragments extracted= 3 number of extra gaps= 2 total=30619 # 1mla.105.84 read from T0547.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1mla)H91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1mla)S92 because S (epsilon) conformation "forbidden" or filtered. T0547 105 :NYGL 1mla 85 :PAMM T0547 110 :A 1mla 90 :G T0547 113 :K 1mla 93 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=30622 # 1wpoA.105.127 read from T0547.t2k.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)G111 (1wpoA)S134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wpoA)T153 T0547 105 :NYGLEA 1wpoA 128 :YAGLSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30623 # 1yxyA.105.49 read from T0547.t2k.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)G111 (1yxyA)N56 because E (beta_S) conformation "forbidden" or filtered. T0547 105 :NYGLEA 1yxyA 50 :AVGIRA T0547 112 :SK 1yxyA 57 :SV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30625 # 1ox0A.105.86 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)G107 (1ox0A)R70 because G (3-10) conformation "forbidden" or filtered. T0547 105 :NY 1ox0A 68 :TN T0547 108 :LEAGSK 1ox0A 71 :FDNYSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30627 # 1jr2A.105.113 read from T0547.t2k.many.frag # found chain 1jr2A in template set T0547 105 :NYGLEAGSK 1jr2A 93 :AKSVYVVGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30628 # 1pot.105.52 read from T0547.t2k.many.frag # found chain 1pot in training set Warning: unaligning (T0547)N105 because of BadResidue code BAD_PEPTIDE in next template residue (1pot)Y77 Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE at template residue (1pot)Y77 Warning: unaligning (T0547)A110 (1pot)V81 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1pot)P82 because P (beta_P) conformation "forbidden" or filtered. T0547 107 :GLE 1pot 78 :DLV T0547 112 :SK 1pot 83 :ST Number of specific fragments extracted= 2 number of extra gaps= 2 total=30630 # 1ylqA.105.67 read from T0547.t2k.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)G107 (1ylqA)E67 because E (beta_S) conformation "forbidden" or filtered. T0547 105 :NY 1ylqA 65 :PF T0547 108 :LEAGSK 1ylqA 68 :FHILTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30632 # 1thtA.105.106 read from T0547.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)S112 (1thtA)S114 because S (epsilon) conformation "forbidden" or filtered. T0547 105 :NYGLEAG 1thtA 107 :NIGLIAA T0547 113 :K 1thtA 115 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=30634 1e9rA expands to /projects/compbio/data/pdb/1e9r.pdb.gz 1e9rA:# 1e9rA.105.17 read from T0547.t2k.many.frag # adding 1e9rA to template set # found chain 1e9rA in template set Warning: unaligning (T0547)Y106 (1e9rA)R89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1e9rA)R92 because P (beta_P) conformation "forbidden" or filtered. T0547 105 :N 1e9rA 88 :L T0547 107 :GL 1e9rA 90 :GT T0547 110 :AGSK 1e9rA 93 :IVSG Number of specific fragments extracted= 3 number of extra gaps= 2 total=30637 # 1wehA.105.32 read from T0547.t2k.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)N105 (1wehA)G33 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1wehA)C38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 (1wehA)Y41 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGLE 1wehA 34 :FGLA T0547 111 :GS 1wehA 39 :GG Number of specific fragments extracted= 2 number of extra gaps= 3 total=30639 # 1twdA.105.31 read from T0547.t2k.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)L108 (1twdA)G35 because S (epsilon) conformation "forbidden" or filtered. T0547 105 :NYG 1twdA 32 :KEG T0547 109 :EAGSK 1twdA 36 :LTPSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30641 # 1vkyA.105.252 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)N105 (1vkyA)G241 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1vkyA)G248 because S (epsilon) conformation "forbidden" or filtered. T0547 106 :YGLEAG 1vkyA 242 :NRIVAV T0547 113 :K 1vkyA 249 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=30643 # 1zbsA.105.88 read from T0547.t2k.many.frag # found chain 1zbsA in template set T0547 105 :NYGLEAGSK 1zbsA 89 :CDRIEVAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30644 1y0zA expands to /projects/compbio/data/pdb/1y0z.pdb.gz 1y0zA:# 1y0zA.105.65 read from T0547.t2k.many.frag # adding 1y0zA to template set # found chain 1y0zA in template set T0547 105 :NYGLEAGSK 1y0zA 66 :FRGFPVNSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30645 # 1jx4A.105.95 read from T0547.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)N105 (1jx4A)S96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1jx4A)K98 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1jx4A)E100 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1jx4A)S103 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :Y 1jx4A 97 :E T0547 108 :L 1jx4A 99 :I T0547 110 :AG 1jx4A 101 :IA T0547 113 :K 1jx4A 104 :I Number of specific fragments extracted= 4 number of extra gaps= 4 total=30649 # 1kwfA.105.54 read from T0547.t2k.many.frag # found chain 1kwfA in training set Warning: unaligning (T0547)L108 (1kwfA)Y90 because L (left) conformation "forbidden" or filtered. T0547 105 :NYG 1kwfA 87 :STN T0547 109 :EAGSK 1kwfA 91 :DTVSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30651 # 7odcA.106.84 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 106 :YGLEAGSKA 7odcA 85 :TGFDCASKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30652 # 1knwA.106.69 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G107 (1knwA)K71 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :Y 1knwA 70 :V T0547 108 :LEAGSKA 1knwA 72 :VDSVSLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30654 # 1rcqA.106.52 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGLEAG 1rcqA 53 :DGFAVA T0547 113 :KA 1rcqA 60 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30656 # 1vp4A.106.111 read from T0547.t2k.many.frag # found chain 1vp4A in template set T0547 106 :YGLEAGSKA 1vp4A 100 :LIFTVGSQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30657 # 1zc6A.106.102 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)G107 (1zc6A)R104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1zc6A)S106 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1zc6A)A108 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :Y 1zc6A 103 :A T0547 108 :L 1zc6A 105 :L T0547 110 :A 1zc6A 107 :L T0547 112 :SKA 1zc6A 109 :TDG Number of specific fragments extracted= 4 number of extra gaps= 3 total=30661 # 1yt8A.106.283 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G107 (1yt8A)L285 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1yt8A)R289 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :Y 1yt8A 284 :Y T0547 108 :LEA 1yt8A 286 :LDV T0547 112 :SKA 1yt8A 290 :TPE Number of specific fragments extracted= 3 number of extra gaps= 2 total=30664 # 1jixA.106.34 read from T0547.t2k.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)G107 (1jixA)N36 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1jixA)I40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A114 (1jixA)K43 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :Y 1jixA 35 :L T0547 108 :LEA 1jixA 37 :VDI T0547 112 :SK 1jixA 41 :SL Number of specific fragments extracted= 3 number of extra gaps= 3 total=30667 # 1yxyA.106.50 read from T0547.t2k.many.frag # found chain 1yxyA in training set T0547 106 :YGLEAGSKA 1yxyA 51 :VGIRANSVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30668 # 1wdaA.106.338 read from T0547.t2k.many.frag # found chain 1wdaA in template set T0547 106 :YGLEAGSKA 1wdaA 332 :CKLTICPEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30669 # 1izoA.106.43 read from T0547.t2k.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)G107 (1izoA)N45 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :Y 1izoA 44 :K T0547 108 :LEAGSKA 1izoA 46 :FICMTGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30671 # 1mla.106.85 read from T0547.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1mla)G90 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1mla)S92 because S (epsilon) conformation "forbidden" or filtered. T0547 106 :Y 1mla 86 :A T0547 108 :L 1mla 88 :M T0547 111 :G 1mla 91 :H T0547 113 :KA 1mla 93 :LG Number of specific fragments extracted= 4 number of extra gaps= 3 total=30675 # 1pzxA.106.118 read from T0547.t2k.many.frag # found chain 1pzxA in template set Warning: unaligning (T0547)E109 (1pzxA)K120 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1pzxA)A122 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :YGL 1pzxA 117 :IDS T0547 110 :A 1pzxA 121 :C T0547 112 :SKA 1pzxA 123 :SLG Number of specific fragments extracted= 3 number of extra gaps= 2 total=30678 # 1xp8A.106.49 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)G107 (1xp8A)D48 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A114 (1xp8A)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 106 :Y 1xp8A 47 :L T0547 108 :LEAGSK 1xp8A 49 :VQVVST Number of specific fragments extracted= 2 number of extra gaps= 2 total=30680 # 1sdeA.106.236 read from T0547.t2k.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)E109 (1sdeA)V240 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1sdeA)S242 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGL 1sdeA 237 :AGA T0547 110 :A 1sdeA 241 :I T0547 112 :SKA 1sdeA 243 :STQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=30683 # 1wpoA.106.128 read from T0547.t2k.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)G107 (1wpoA)G130 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wpoA)T153 T0547 106 :Y 1wpoA 129 :A T0547 108 :LEAG 1wpoA 131 :LSLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30685 # 1y0zA.106.66 read from T0547.t2k.many.frag # found chain 1y0zA in template set T0547 106 :YGLEAGSKA 1y0zA 67 :RGFPVNSAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30686 # 1jr2A.106.114 read from T0547.t2k.many.frag # found chain 1jr2A in template set T0547 106 :YGLEAGSKA 1jr2A 94 :KSVYVVGNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30687 # 1ki9A.106.31 read from T0547.t2k.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)A110 (1ki9A)M36 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :YGLE 1ki9A 32 :INYK T0547 111 :GSKA 1ki9A 37 :VNFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30689 # 1gxjA.106.30 read from T0547.t2k.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)E109 (1gxjA)D518 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGL 1gxjA 515 :GLV T0547 110 :AGSKA 1gxjA 519 :VVSNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30691 # 1thtA.106.107 read from T0547.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)G107 (1thtA)G109 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :Y 1thtA 108 :I T0547 108 :LEAGSKA 1thtA 110 :LIAASLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30693 # 1od6A.106.6 read from T0547.t2k.many.frag # found chain 1od6A in training set Warning: unaligning (T0547)E109 (1od6A)D10 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1od6A)P11 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1od6A)L12 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :YGL 1od6A 7 :GSF T0547 112 :SKA 1od6A 13 :TNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30695 # 1e9rA.106.18 read from T0547.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)E109 (1e9rA)R92 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1e9rA)V94 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :YGL 1e9rA 89 :RGT T0547 110 :A 1e9rA 93 :I T0547 112 :SKA 1e9rA 95 :SGG Number of specific fragments extracted= 3 number of extra gaps= 2 total=30698 # 1wehA.106.33 read from T0547.t2k.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)G107 (1wehA)G35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1wehA)G40 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 (1wehA)Y41 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :Y 1wehA 34 :F T0547 108 :LEAG 1wehA 36 :LACG T0547 114 :A 1wehA 42 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=30701 # 1uxoA.106.33 read from T0547.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)G111 (1uxoA)L37 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 (1uxoA)M39 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :YGLEA 1uxoA 32 :VQADI T0547 112 :S 1uxoA 38 :N T0547 114 :A 1uxoA 40 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=30704 # 1ox0A.106.87 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)G107 (1ox0A)R70 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1ox0A)D72 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :Y 1ox0A 69 :N T0547 108 :L 1ox0A 71 :F T0547 110 :AGSKA 1ox0A 73 :NYSLY Number of specific fragments extracted= 3 number of extra gaps= 2 total=30707 # 1twdA.106.3 read from T0547.t2k.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)S112 (1twdA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGLEAG 1twdA 4 :LEICCY T0547 113 :KA 1twdA 11 :ME Number of specific fragments extracted= 2 number of extra gaps= 1 total=30709 # 1vkyA.106.253 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)S112 (1vkyA)G248 because S (epsilon) conformation "forbidden" or filtered. T0547 106 :YGLEAG 1vkyA 242 :NRIVAV T0547 113 :KA 1vkyA 249 :TT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30711 1cvrA expands to /projects/compbio/data/pdb/1cvr.pdb.gz 1cvrA:# 1cvrA.106.35 read from T0547.t2k.many.frag # adding 1cvrA to template set # found chain 1cvrA in template set T0547 106 :YGLEAGSKA 1cvrA 36 :LRTEVKVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30712 # 1g8mA.106.29 read from T0547.t2k.many.frag # found chain 1g8mA in training set T0547 106 :YGLEAGSKA 1g8mA 30 :LGLIASGGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30713 # 1ylqA.106.68 read from T0547.t2k.many.frag # found chain 1ylqA in template set T0547 106 :YGLEAGSKA 1ylqA 66 :FEFHILTKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30714 # 7odcA.107.85 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E109 (7odcA)D88 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (7odcA)A90 because G (3-10) conformation "forbidden" or filtered. T0547 107 :GL 7odcA 86 :GF T0547 110 :A 7odcA 89 :C T0547 112 :SKAE 7odcA 91 :SKTE Number of specific fragments extracted= 3 number of extra gaps= 2 total=30717 # 1knwA.107.70 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G107 (1knwA)K71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1knwA)V75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1knwA)S76 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEA 1knwA 72 :VDS T0547 113 :KAE 1knwA 77 :LGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=30719 # 1yxyA.107.51 read from T0547.t2k.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)G111 (1yxyA)N56 because E (beta_S) conformation "forbidden" or filtered. T0547 107 :GLEA 1yxyA 52 :GIRA T0547 112 :SKAE 1yxyA 57 :SVRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30721 # 1rcqA.107.53 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GLE 1rcqA 54 :GFA T0547 111 :G 1rcqA 58 :A T0547 113 :KAE 1rcqA 60 :IEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=30724 # 1vp4A.107.112 read from T0547.t2k.many.frag # found chain 1vp4A in template set T0547 107 :GLEAGSKAE 1vp4A 101 :IFTVGSQQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30725 # 1yt8A.107.284 read from T0547.t2k.many.frag # found chain 1yt8A in template set T0547 107 :GLEAGSKAE 1yt8A 285 :LLDVRTPEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30726 # 1zc6A.107.103 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)G107 (1zc6A)R104 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :LEAGSKAE 1zc6A 105 :LSLATDGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=30727 # 1wdaA.107.339 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G107 (1wdaA)K333 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1wdaA)C337 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :LEA 1wdaA 334 :LTI T0547 112 :SKAE 1wdaA 338 :PEEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=30729 # 1y0zA.107.67 read from T0547.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)S112 (1y0zA)S73 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GLEAG 1y0zA 68 :GFPVN T0547 113 :KAE 1y0zA 74 :ADD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30731 # 1sdeA.107.237 read from T0547.t2k.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)G107 (1sdeA)G238 because G (3-10) conformation "forbidden" or filtered. T0547 108 :LEAGSKAE 1sdeA 239 :AVISSTQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=30732 # 1jr2A.107.115 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G107 (1jr2A)S95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1jr2A)Y97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1jr2A)V99 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :L 1jr2A 96 :V T0547 110 :A 1jr2A 98 :V T0547 112 :SKAE 1jr2A 100 :GNAT Number of specific fragments extracted= 3 number of extra gaps= 3 total=30735 # 1mla.107.86 read from T0547.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1mla)H91 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :L 1mla 88 :M T0547 110 :A 1mla 90 :G T0547 112 :SKAE 1mla 92 :SLGE Number of specific fragments extracted= 3 number of extra gaps= 3 total=30738 # 1xp8A.107.50 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)G107 (1xp8A)D48 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A114 (1xp8A)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 108 :LEAGSK 1xp8A 49 :VQVVST T0547 115 :E 1xp8A 56 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=30740 # 1g8mA.107.29 read from T0547.t2k.many.frag # found chain 1g8mA in training set T0547 107 :GLEAGSKAE 1g8mA 30 :LGLIASGGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30741 # 1e9rA.107.19 read from T0547.t2k.many.frag # found chain 1e9rA in template set T0547 107 :GLEAGSKAE 1e9rA 90 :GTRIVSGGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30742 # 1od6A.107.7 read from T0547.t2k.many.frag # found chain 1od6A in training set Warning: unaligning (T0547)L108 (1od6A)F9 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1od6A)D10 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1od6A)P11 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1od6A)L12 because P (beta_P) conformation "forbidden" or filtered. T0547 107 :G 1od6A 8 :S T0547 112 :SKAE 1od6A 13 :TNGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=30744 # 1jixA.107.35 read from T0547.t2k.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)E109 (1jixA)D38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1jixA)I40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1jixA)S41 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A114 (1jixA)K43 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GL 1jixA 36 :NV T0547 110 :A 1jixA 39 :I T0547 113 :K 1jixA 42 :L T0547 115 :E 1jixA 44 :N Number of specific fragments extracted= 4 number of extra gaps= 3 total=30748 # 1izoA.107.44 read from T0547.t2k.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)G107 (1izoA)N45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1izoA)M49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1izoA)T50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 (1izoA)G51 because S (epsilon) conformation "forbidden" or filtered. T0547 108 :LEA 1izoA 46 :FIC T0547 114 :AE 1izoA 52 :AE Number of specific fragments extracted= 2 number of extra gaps= 2 total=30750 # 1ki9A.107.32 read from T0547.t2k.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)G107 (1ki9A)N33 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1ki9A)K35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1ki9A)V37 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :L 1ki9A 34 :Y T0547 110 :A 1ki9A 36 :M T0547 112 :SKAE 1ki9A 38 :NFGT Number of specific fragments extracted= 3 number of extra gaps= 3 total=30753 # 1pzxA.107.119 read from T0547.t2k.many.frag # found chain 1pzxA in template set Warning: unaligning (T0547)E109 (1pzxA)K120 because L (left) conformation "forbidden" or filtered. T0547 107 :GL 1pzxA 118 :DS T0547 110 :AGSKAE 1pzxA 121 :CASLGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30755 # 1thtA.107.108 read from T0547.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)G107 (1thtA)G109 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1thtA)A113 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :LEA 1thtA 110 :LIA T0547 112 :SKAE 1thtA 114 :SLSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=30757 1n2zA expands to /projects/compbio/data/pdb/1n2z.pdb.gz 1n2zA:# 1n2zA.107.3 read from T0547.t2k.many.frag # adding 1n2zA to template set # found chain 1n2zA in template set T0547 107 :GLEAGSKAE 1n2zA 25 :RVITLSPAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30758 1t0fA expands to /projects/compbio/data/pdb/1t0f.pdb.gz 1t0fA:# 1t0fA.107.57 read from T0547.t2k.many.frag # adding 1t0fA to template set # found chain 1t0fA in template set Warning: unaligning (T0547)G111 (1t0fA)L59 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1t0fA)S60 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GLEA 1t0fA 55 :VHHL T0547 113 :KAE 1t0fA 61 :DLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30760 1z7xW expands to /projects/compbio/data/pdb/1z7x.pdb.gz 1z7xW:# 1z7xW.107.152 read from T0547.t2k.many.frag # adding 1z7xW to template set # found chain 1z7xW in template set Warning: unaligning (T0547)E109 (1z7xW)S154 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GL 1z7xW 152 :SL T0547 110 :AGSKAE 1z7xW 155 :AASCEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=30762 1s3rA expands to /projects/compbio/data/pdb/1s3r.pdb.gz 1s3rA:# 1s3rA.107.212 read from T0547.t2k.many.frag # adding 1s3rA to template set # found chain 1s3rA in template set Warning: unaligning (T0547)L108 (1s3rA)I211 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :G 1s3rA 210 :S T0547 109 :EAGSKAE 1s3rA 212 :SAQSMSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30764 # 1twdA.107.4 read from T0547.t2k.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)G107 (1twdA)E5 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1twdA)Y9 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1twdA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEA 1twdA 6 :ICC T0547 113 :KAE 1twdA 11 :MEC Number of specific fragments extracted= 2 number of extra gaps= 2 total=30766 # 1t6cA.107.112 read from T0547.t2k.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)G111 (1t6cA)I114 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1t6cA)T115 because P (beta_P) conformation "forbidden" or filtered. T0547 107 :GLEA 1t6cA 110 :VVEV T0547 113 :KAE 1t6cA 116 :PEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30768 # 1jg1A.107.70 read from T0547.t2k.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)G111 (1jg1A)S75 because P (beta_P) conformation "forbidden" or filtered. T0547 107 :GLEA 1jg1A 71 :GQTV T0547 112 :SKAE 1jg1A 76 :APHM Number of specific fragments extracted= 2 number of extra gaps= 1 total=30770 # 1wpoA.107.129 read from T0547.t2k.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)G107 (1wpoA)G130 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1wpoA)S134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wpoA)T153 T0547 108 :LEA 1wpoA 131 :LSL Number of specific fragments extracted= 1 number of extra gaps= 2 total=30771 # 1ywfA.107.71 read from T0547.t2k.many.frag # found chain 1ywfA in template set Warning: unaligning (T0547)G111 (1ywfA)R56 because P (beta_P) conformation "forbidden" or filtered. T0547 107 :GLEA 1ywfA 52 :VADL T0547 112 :SKAE 1ywfA 57 :SSRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30773 # 7odcA.108.86 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G111 (7odcA)A90 because G (3-10) conformation "forbidden" or filtered. T0547 108 :LEA 7odcA 87 :FDC T0547 112 :SKAEL 7odcA 91 :SKTEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30775 # 1knwA.108.71 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G111 (1knwA)V75 because G (3-10) conformation "forbidden" or filtered. T0547 108 :LEA 1knwA 72 :VDS T0547 112 :SKAEL 1knwA 76 :SLGEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30777 # 1yxyA.108.52 read from T0547.t2k.many.frag # found chain 1yxyA in training set T0547 108 :LEAGSKAEL 1yxyA 53 :IRANSVRDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30778 # 1rcqA.108.54 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LE 1rcqA 55 :FA T0547 111 :GSKAEL 1rcqA 58 :ACIEEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30780 # 1vp4A.108.113 read from T0547.t2k.many.frag # found chain 1vp4A in template set T0547 108 :LEAGSKAEL 1vp4A 102 :FTVGSQQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30781 # 1zc6A.108.104 read from T0547.t2k.many.frag # found chain 1zc6A in template set T0547 108 :LEAGSKAEL 1zc6A 105 :LSLATDGYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30782 # 1g8mA.108.30 read from T0547.t2k.many.frag # found chain 1g8mA in training set T0547 108 :LEAGSKAEL 1g8mA 31 :GLIASGGTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30783 # 1yt8A.108.285 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G111 (1yt8A)R289 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :LEA 1yt8A 286 :LDV T0547 112 :SKAEL 1yt8A 290 :TPEEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30785 # 1sdeA.108.238 read from T0547.t2k.many.frag # found chain 1sdeA in template set T0547 108 :LEAGSKAEL 1sdeA 239 :AVISSTQDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30786 # 1y0zA.108.68 read from T0547.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)A110 (1y0zA)V71 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1y0zA)N72 because G (3-10) conformation "forbidden" or filtered. T0547 108 :LE 1y0zA 69 :FP T0547 112 :SKAEL 1y0zA 73 :SADDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30788 # 1t0fA.108.58 read from T0547.t2k.many.frag # found chain 1t0fA in template set T0547 108 :LEAGSKAEL 1t0fA 56 :HHLLSDLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30789 # 1jr2A.108.116 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)S112 (1jr2A)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 108 :LEAG 1jr2A 96 :VYVV T0547 113 :KAEL 1jr2A 101 :NATA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30791 # 1od6A.108.8 read from T0547.t2k.many.frag # found chain 1od6A in training set Warning: unaligning (T0547)E109 (1od6A)D10 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1od6A)P11 because C (cis) conformation "forbidden" or filtered. T0547 108 :L 1od6A 9 :F T0547 111 :GSKAEL 1od6A 12 :LTNGHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30793 # 1xp8A.108.51 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)E109 (1xp8A)Q50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A114 (1xp8A)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 108 :L 1xp8A 49 :V T0547 110 :AGSK 1xp8A 51 :VVST T0547 115 :EL 1xp8A 56 :SL Number of specific fragments extracted= 3 number of extra gaps= 2 total=30796 # 1mla.108.87 read from T0547.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1mla)H91 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :L 1mla 88 :M T0547 110 :A 1mla 90 :G T0547 112 :SKAEL 1mla 92 :SLGEY Number of specific fragments extracted= 3 number of extra gaps= 2 total=30799 # 1z7xW.108.153 read from T0547.t2k.many.frag # found chain 1z7xW in template set T0547 108 :LEAGSKAEL 1z7xW 153 :LSAASCEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30800 # 1n2zA.108.4 read from T0547.t2k.many.frag # found chain 1n2zA in template set T0547 108 :LEAGSKAEL 1n2zA 26 :VITLSPANT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30801 # 1thtA.108.109 read from T0547.t2k.many.frag # found chain 1thtA in template set T0547 108 :LEAGSKAEL 1thtA 110 :LIAASLSAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30802 # 1e9rA.108.20 read from T0547.t2k.many.frag # found chain 1e9rA in template set T0547 108 :LEAGSKAEL 1e9rA 91 :TRIVSGGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30803 # 1z70X.108.150 read from T0547.t2k.many.frag # found chain 1z70X in training set T0547 108 :LEAGSKAEL 1z70X 1223 :KRLPTEAEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=30804 # 1pzxA.108.120 read from T0547.t2k.many.frag # found chain 1pzxA in template set Warning: unaligning (T0547)G111 (1pzxA)A122 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :LEA 1pzxA 119 :SKC T0547 112 :SKAEL 1pzxA 123 :SLGQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30806 # 1wdaA.108.340 read from T0547.t2k.many.frag # found chain 1wdaA in template set T0547 108 :LEAGSKAEL 1wdaA 334 :LTICPEEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30807 # 1ki9A.108.33 read from T0547.t2k.many.frag # found chain 1ki9A in template set T0547 108 :LEAGSKAEL 1ki9A 34 :YKMVNFGTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30808 # 1jg1A.108.71 read from T0547.t2k.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)G111 (1jg1A)S75 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :LEA 1jg1A 72 :QTV T0547 112 :SKAEL 1jg1A 76 :APHMV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30810 1v4aA expands to /projects/compbio/data/pdb/1v4a.pdb.gz 1v4aA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1v4aA.108.317 read from T0547.t2k.many.frag # adding 1v4aA to template set # found chain 1v4aA in template set Warning: unaligning (T0547)E109 (1v4aA)G319 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :L 1v4aA 318 :L T0547 110 :AGSKAEL 1v4aA 320 :AGGIREI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30812 # 1izoA.108.45 read from T0547.t2k.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)G111 (1izoA)M49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1izoA)T50 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEA 1izoA 46 :FIC T0547 113 :KAEL 1izoA 51 :GAEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30814 1mpxA expands to /projects/compbio/data/pdb/1mpx.pdb.gz 1mpxA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1mpxA.108.146 read from T0547.t2k.many.frag # adding 1mpxA to template set # found chain 1mpxA in template set Warning: unaligning (T0547)K113 (1mpxA)S174 because S (epsilon) conformation "forbidden" or filtered. T0547 108 :LEAGS 1mpxA 169 :GMIGS T0547 114 :AEL 1mpxA 175 :YEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30816 # 2etvA.108.28 read from T0547.t2k.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)S112 (2etvA)G45 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 (2etvA)P46 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :LEAG 2etvA 41 :IVAV T0547 114 :AEL 2etvA 47 :GAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30818 # 1pe9A.108.35 read from T0547.t2k.many.frag # found chain 1pe9A in training set T0547 108 :LEAGSKAEL 1pe9A 36 :YIVTNISEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30819 # 1twdA.108.5 read from T0547.t2k.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)G111 (1twdA)Y9 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1twdA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEA 1twdA 6 :ICC T0547 113 :KAEL 1twdA 11 :MECA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30821 # 7odcA.109.87 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G111 (7odcA)A90 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (7odcA)S91 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :EA 7odcA 88 :DC T0547 113 :KAELL 7odcA 92 :KTEIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30823 # 1yxyA.109.53 read from T0547.t2k.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)S112 (1yxyA)S57 because S (epsilon) conformation "forbidden" or filtered. T0547 109 :EAG 1yxyA 54 :RAN T0547 113 :KAELL 1yxyA 58 :VRDIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30825 # 1knwA.109.72 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 109 :EAGSKAELL 1knwA 73 :DSVSLGEIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30826 # 1rcqA.109.55 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :EAG 1rcqA 56 :AVA T0547 113 :KAELL 1rcqA 60 :IEEGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30828 # 1t0fA.109.59 read from T0547.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)G111 (1t0fA)L59 because G (3-10) conformation "forbidden" or filtered. T0547 109 :EA 1t0fA 57 :HL T0547 112 :SKAELL 1t0fA 60 :SDLELA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30830 # 1y0zA.109.69 read from T0547.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)S112 (1y0zA)S73 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :EAG 1y0zA 70 :PVN T0547 113 :KAELL 1y0zA 74 :ADDFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30832 # 1g8mA.109.31 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)E109 (1g8mA)L32 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1g8mA)I33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1g8mA)A34 because Y (epsilon') conformation "forbidden" or filtered. T0547 112 :SKAELL 1g8mA 35 :SGGTAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=30833 # 1vp4A.109.114 read from T0547.t2k.many.frag # found chain 1vp4A in template set T0547 109 :EAGSKAELL 1vp4A 103 :TVGSQQALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30834 # 1z70X.109.151 read from T0547.t2k.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)E109 (1z70X)R1224 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1z70X)L1225 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1z70X)T1227 because P (beta_P) conformation "forbidden" or filtered. T0547 111 :G 1z70X 1226 :P T0547 113 :KAELL 1z70X 1228 :EAEWE Number of specific fragments extracted= 2 number of extra gaps= 2 total=30836 # 1zc6A.109.105 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)G111 (1zc6A)A108 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :EA 1zc6A 106 :SL T0547 112 :SKAELL 1zc6A 109 :TDGYTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30838 # 1od6A.109.9 read from T0547.t2k.many.frag # found chain 1od6A in training set Warning: unaligning (T0547)A110 (1od6A)P11 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1od6A)L12 because P (beta_P) conformation "forbidden" or filtered. T0547 109 :E 1od6A 10 :D T0547 112 :SKAELL 1od6A 13 :TNGHLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30840 # 1xp8A.109.52 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)G111 (1xp8A)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 109 :EA 1xp8A 50 :QV T0547 112 :SKAELL 1xp8A 53 :STGSLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30842 # 1sdeA.109.239 read from T0547.t2k.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)E109 (1sdeA)V240 because P (beta_P) conformation "forbidden" or filtered. T0547 110 :AGSKAELL 1sdeA 241 :ISSTQDLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=30843 # 1z7xW.109.154 read from T0547.t2k.many.frag # found chain 1z7xW in template set T0547 109 :EAGSKAELL 1z7xW 154 :SAASCEPLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30844 1otsA expands to /projects/compbio/data/pdb/1ots.pdb.gz 1otsA:# 1otsA.109.104 read from T0547.t2k.many.frag # adding 1otsA to template set # found chain 1otsA in template set Warning: unaligning (T0547)A110 (1otsA)G106 because S (epsilon) conformation "forbidden" or filtered. T0547 109 :E 1otsA 105 :G T0547 111 :GSKAELL 1otsA 107 :SGIPEIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30846 # 1n2zA.109.5 read from T0547.t2k.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)E109 (1n2zA)I27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1n2zA)L29 because G (3-10) conformation "forbidden" or filtered. T0547 110 :A 1n2zA 28 :T T0547 112 :SKAELL 1n2zA 30 :SPANTE Number of specific fragments extracted= 2 number of extra gaps= 2 total=30848 # 1mla.109.88 read from T0547.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1mla)H91 because P (beta_P) conformation "forbidden" or filtered. T0547 110 :A 1mla 90 :G T0547 112 :SKAELL 1mla 92 :SLGEYS Number of specific fragments extracted= 2 number of extra gaps= 2 total=30850 # 1pe9A.109.36 read from T0547.t2k.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)G111 (1pe9A)T39 because G (3-10) conformation "forbidden" or filtered. T0547 109 :EA 1pe9A 37 :IV T0547 112 :SKAELL 1pe9A 40 :NISEFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30852 # 1mpxA.109.147 read from T0547.t2k.many.frag # found chain 1mpxA in template set Warning: unaligning (T0547)A110 (1mpxA)I171 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 (1mpxA)S174 because S (epsilon) conformation "forbidden" or filtered. T0547 109 :E 1mpxA 170 :M T0547 111 :GS 1mpxA 172 :GS T0547 114 :AELL 1mpxA 175 :YEGF Number of specific fragments extracted= 3 number of extra gaps= 2 total=30855 # 1v4aA.109.318 read from T0547.t2k.many.frag # found chain 1v4aA in template set Warning: unaligning (T0547)A110 (1v4aA)A320 because P (beta_P) conformation "forbidden" or filtered. T0547 109 :E 1v4aA 319 :G T0547 111 :GSKAELL 1v4aA 321 :GGIREIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30857 # 1yt8A.109.286 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)A110 (1yt8A)V288 because G (3-10) conformation "forbidden" or filtered. T0547 109 :E 1yt8A 287 :D T0547 111 :GSKAELL 1yt8A 289 :RTPEEYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30859 # 1b8oA.109.217 read from T0547.t2k.many.frag # found chain 1b8oA in training set Warning: unaligning (T0547)S112 (1b8oA)T221 because T (delta_L) conformation "forbidden" or filtered. T0547 109 :EAG 1b8oA 218 :GMS T0547 113 :KAELL 1b8oA 222 :VPEVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30861 # 1jr2A.109.117 read from T0547.t2k.many.frag # found chain 1jr2A in template set T0547 109 :EAGSKAELL 1jr2A 97 :YVVGNATAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30862 # 1thtA.109.110 read from T0547.t2k.many.frag # found chain 1thtA in template set T0547 109 :EAGSKAELL 1thtA 111 :IAASLSARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30863 # 1pzxA.109.121 read from T0547.t2k.many.frag # found chain 1pzxA in template set T0547 109 :EAGSKAELL 1pzxA 120 :KCASLGQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30864 # 2etvA.109.29 read from T0547.t2k.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)S112 (2etvA)G45 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A114 (2etvA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 109 :EAG 2etvA 42 :VAV T0547 113 :K 2etvA 46 :P T0547 115 :ELL 2etvA 48 :ALR Number of specific fragments extracted= 3 number of extra gaps= 2 total=30867 # 2fokA.109.192 read from T0547.t2k.many.frag # found chain 2fokA in template set T0547 109 :EAGSKAELL 2fokA 193 :TSLPEGILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30868 # 1jpzA.109.70 read from T0547.t2k.many.frag # found chain 1jpzA in template set Warning: unaligning (T0547)G111 (1jpzA)N70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 (1jpzA)S72 because P (beta_P) conformation "forbidden" or filtered. T0547 109 :EA 1jpzA 68 :DK T0547 112 :S 1jpzA 71 :L T0547 114 :AELL 1jpzA 73 :QALK Number of specific fragments extracted= 3 number of extra gaps= 2 total=30871 # 1e9rA.109.21 read from T0547.t2k.many.frag # found chain 1e9rA in template set T0547 109 :EAGSKAELL 1e9rA 92 :RIVSGGKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30872 1c96A expands to /projects/compbio/data/pdb/1c96.pdb.gz 1c96A:# 1c96A.109.244 read from T0547.t2k.many.frag # adding 1c96A to template set # found chain 1c96A in template set Warning: unaligning (T0547)A110 (1c96A)S247 because G (3-10) conformation "forbidden" or filtered. T0547 109 :E 1c96A 246 :D T0547 111 :GSKAELL 1c96A 248 :ISCTGMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30874 # 1knwA.110.73 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G111 (1knwA)V75 because G (3-10) conformation "forbidden" or filtered. T0547 110 :A 1knwA 74 :S T0547 112 :SKAELLL 1knwA 76 :SLGEIER Number of specific fragments extracted= 2 number of extra gaps= 1 total=30876 # 7odcA.110.88 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 110 :AGSKAELLL 7odcA 89 :CASKTEIQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30877 # 1yxyA.110.54 read from T0547.t2k.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)G111 (1yxyA)N56 because E (beta_S) conformation "forbidden" or filtered. T0547 110 :A 1yxyA 55 :A T0547 112 :SKAELLL 1yxyA 57 :SVRDIKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30879 # 1rcqA.110.56 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 111 :G 1rcqA 58 :A T0547 113 :KAELLL 1rcqA 60 :IEEGLE Number of specific fragments extracted= 2 number of extra gaps= 2 total=30881 # 1g8mA.110.32 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)G111 (1g8mA)A34 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :A 1g8mA 33 :I T0547 112 :SKAELLL 1g8mA 35 :SGGTATA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30883 # 1z7xW.110.155 read from T0547.t2k.many.frag # found chain 1z7xW in template set T0547 110 :AGSKAELLL 1z7xW 155 :AASCEPLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30884 # 1t0fA.110.60 read from T0547.t2k.many.frag # found chain 1t0fA in template set T0547 110 :AGSKAELLL 1t0fA 58 :LLSDLELAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30885 # 1otsA.110.105 read from T0547.t2k.many.frag # found chain 1otsA in template set T0547 110 :AGSKAELLL 1otsA 106 :GSGIPEIEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30886 # 1z70X.110.152 read from T0547.t2k.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)G111 (1z70X)P1226 because P (beta_P) conformation "forbidden" or filtered. T0547 110 :A 1z70X 1225 :L T0547 112 :SKAELLL 1z70X 1227 :TEAEWEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30888 # 1pii.110.116 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 110 :AGSKAELLL 1pii 117 :IIDPYQIYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30889 # 1vp4A.110.115 read from T0547.t2k.many.frag # found chain 1vp4A in template set T0547 110 :AGSKAELLL 1vp4A 104 :VGSQQALDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30890 # 1y0zA.110.70 read from T0547.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)G111 (1y0zA)N72 because G (3-10) conformation "forbidden" or filtered. T0547 110 :A 1y0zA 71 :V T0547 112 :SKAELLL 1y0zA 73 :SADDFND Number of specific fragments extracted= 2 number of extra gaps= 1 total=30892 # 1pe9A.110.37 read from T0547.t2k.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)G111 (1pe9A)T39 because G (3-10) conformation "forbidden" or filtered. T0547 110 :A 1pe9A 38 :V T0547 112 :SKAELLL 1pe9A 40 :NISEFTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30894 # 1od6A.110.10 read from T0547.t2k.many.frag # found chain 1od6A in training set Warning: unaligning (T0547)A110 (1od6A)P11 because C (cis) conformation "forbidden" or filtered. T0547 111 :GSKAELLL 1od6A 12 :LTNGHLDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=30895 # 1n2zA.110.6 read from T0547.t2k.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)G111 (1n2zA)L29 because G (3-10) conformation "forbidden" or filtered. T0547 110 :A 1n2zA 28 :T T0547 112 :SKAELLL 1n2zA 30 :SPANTEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30897 # 1mpxA.110.148 read from T0547.t2k.many.frag # found chain 1mpxA in template set T0547 110 :AGSKAELLL 1mpxA 171 :IGSSYEGFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30898 # 1xp8A.110.53 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)A114 (1xp8A)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 110 :AGSK 1xp8A 51 :VVST T0547 115 :ELLL 1xp8A 56 :SLSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30900 # 2etvA.110.30 read from T0547.t2k.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)S112 (2etvA)G45 because S (epsilon) conformation "forbidden" or filtered. T0547 110 :AG 2etvA 43 :AV T0547 113 :KAELLL 2etvA 46 :PGALRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30902 # 1mw5A.110.69 read from T0547.t2k.many.frag # found chain 1mw5A in template set Warning: unaligning (T0547)A110 (1mw5A)S67 because Y (epsilon') conformation "forbidden" or filtered. T0547 111 :GSKAELLL 1mw5A 68 :ASWLNLDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=30903 # 1zc6A.110.106 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)G111 (1zc6A)A108 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :A 1zc6A 107 :L T0547 112 :SKAELLL 1zc6A 109 :TDGYTTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30905 # 1jr2A.110.118 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G111 (1jr2A)V99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1jr2A)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 110 :A 1jr2A 98 :V T0547 113 :KAELLL 1jr2A 101 :NATASL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30907 # 1sdeA.110.240 read from T0547.t2k.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)G111 (1sdeA)S242 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :A 1sdeA 241 :I T0547 112 :SKAELLL 1sdeA 243 :STQDLDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30909 # 1v4aA.110.319 read from T0547.t2k.many.frag # found chain 1v4aA in template set Warning: unaligning (T0547)A110 (1v4aA)A320 because P (beta_P) conformation "forbidden" or filtered. T0547 111 :GSKAELLL 1v4aA 321 :GGIREIEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=30910 # 1b8oA.110.218 read from T0547.t2k.many.frag # found chain 1b8oA in training set Warning: unaligning (T0547)S112 (1b8oA)T221 because T (delta_L) conformation "forbidden" or filtered. T0547 110 :AG 1b8oA 219 :MS T0547 113 :KAELLL 1b8oA 222 :VPEVIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30912 # 1mla.110.89 read from T0547.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0547)S112 (1mla)S92 because S (epsilon) conformation "forbidden" or filtered. T0547 110 :AG 1mla 90 :GH T0547 113 :KAELLL 1mla 93 :LGEYSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30914 # 1jpzA.110.71 read from T0547.t2k.many.frag # found chain 1jpzA in template set T0547 110 :AGSKAELLL 1jpzA 69 :KNLSQALKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30915 # 2fokA.110.193 read from T0547.t2k.many.frag # found chain 2fokA in template set T0547 110 :AGSKAELLL 2fokA 194 :SLPEGILLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30916 # 1twdA.110.7 read from T0547.t2k.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)A110 (1twdA)C8 because E (beta_S) conformation "forbidden" or filtered. T0547 111 :GSKAELLL 1twdA 9 :YSMECALT Number of specific fragments extracted= 1 number of extra gaps= 1 total=30917 # 1m9xC.110.45 read from T0547.t2k.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)G111 (1m9xC)A47 because P (beta_P) conformation "forbidden" or filtered. T0547 110 :A 1m9xC 46 :G T0547 112 :SKAELLL 1m9xC 48 :TPQDLNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30919 # 1ct5A.110.67 read from T0547.t2k.many.frag # found chain 1ct5A in template set T0547 110 :AGSKAELLL 1ct5A 69 :ENYVQELIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30920 # 1knwA.111.74 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 111 :GSKAELLLA 1knwA 75 :VSLGEIERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30921 # 7odcA.111.89 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 111 :GSKAELLLA 7odcA 90 :ASKTEIQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30922 # 1rcqA.111.57 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 111 :G 1rcqA 58 :A T0547 113 :KAELLLA 1rcqA 60 :IEEGLEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30924 # 1yxyA.111.55 read from T0547.t2k.many.frag # found chain 1yxyA in training set T0547 111 :GSKAELLLA 1yxyA 56 :NSVRDIKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30925 # 1z7xW.111.156 read from T0547.t2k.many.frag # found chain 1z7xW in template set T0547 111 :GSKAELLLA 1z7xW 156 :ASCEPLASV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30926 # 1g8mA.111.33 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)G111 (1g8mA)A34 because Y (epsilon') conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1g8mA 35 :SGGTATAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30927 # 1otsA.111.106 read from T0547.t2k.many.frag # found chain 1otsA in template set Warning: unaligning (T0547)S112 (1otsA)G108 because T (delta_L) conformation "forbidden" or filtered. T0547 111 :G 1otsA 107 :S T0547 113 :KAELLLA 1otsA 109 :IPEIEGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30929 # 1od6A.111.11 read from T0547.t2k.many.frag # found chain 1od6A in training set T0547 111 :GSKAELLLA 1od6A 12 :LTNGHLDVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30930 # 1pii.111.117 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 111 :GSKAELLLA 1pii 118 :IDPYQIYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30931 # 1z70X.111.153 read from T0547.t2k.many.frag # found chain 1z70X in training set T0547 111 :GSKAELLLA 1z70X 1226 :PTEAEWEYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30932 # 1vp4A.111.116 read from T0547.t2k.many.frag # found chain 1vp4A in template set T0547 111 :GSKAELLLA 1vp4A 105 :GSQQALDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30933 # 1n2zA.111.7 read from T0547.t2k.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)G111 (1n2zA)L29 because G (3-10) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1n2zA 30 :SPANTELA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30934 # 1xp8A.111.54 read from T0547.t2k.many.frag # found chain 1xp8A in template set T0547 111 :GSKAELLLA 1xp8A 52 :VSTGSLSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30935 # 2etvA.111.31 read from T0547.t2k.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)A114 (2etvA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 111 :GSK 2etvA 44 :VGP T0547 115 :ELLLA 2etvA 48 :ALRLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30937 # 1t0fA.111.61 read from T0547.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)G111 (1t0fA)L59 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1t0fA)S60 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLA 1t0fA 61 :DLELAVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=30938 # 1pe9A.111.38 read from T0547.t2k.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)G111 (1pe9A)T39 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1pe9A)N40 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLA 1pe9A 41 :ISEFTSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30939 # 1mpxA.111.149 read from T0547.t2k.many.frag # found chain 1mpxA in template set T0547 111 :GSKAELLLA 1mpxA 172 :GSSYEGFTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30940 # 1y0zA.111.71 read from T0547.t2k.many.frag # found chain 1y0zA in template set T0547 111 :GSKAELLLA 1y0zA 72 :NSADDFNDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30941 # 1ig0A.111.66 read from T0547.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0547)G111 (1ig0A)C67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 (1ig0A)D69 because S (epsilon) conformation "forbidden" or filtered. T0547 112 :S 1ig0A 68 :A T0547 114 :AELLLA 1ig0A 70 :GAANRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=30943 # 1jr2A.111.119 read from T0547.t2k.many.frag # found chain 1jr2A in template set T0547 111 :GSKAELLLA 1jr2A 99 :VGNATASLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30944 # 1sdeA.111.241 read from T0547.t2k.many.frag # found chain 1sdeA in template set T0547 111 :GSKAELLLA 1sdeA 242 :SSTQDLDTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30945 # 1mw5A.111.70 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 111 :GSKAELLLA 1mw5A 68 :ASWLNLDDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30946 # 1gkpA.111.131 read from T0547.t2k.many.frag # found chain 1gkpA in training set T0547 111 :GSKAELLLA 1gkpA 133 :KTEGQLREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30947 1lnsA expands to /projects/compbio/data/pdb/1lns.pdb.gz 1lnsA:# 1lnsA.111.470 read from T0547.t2k.many.frag # adding 1lnsA to template set # found chain 1lnsA in template set Warning: unaligning (T0547)G111 (1lnsA)V471 because D (zeta) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1lnsA 472 :TPEQAYNF Number of specific fragments extracted= 1 number of extra gaps= 1 total=30948 # 1twdA.111.8 read from T0547.t2k.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)G111 (1twdA)Y9 because G (3-10) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1twdA 10 :SMECALTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30949 # 1mla.111.90 read from T0547.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0547)S112 (1mla)S92 because S (epsilon) conformation "forbidden" or filtered. T0547 111 :G 1mla 91 :H T0547 113 :KAELLLA 1mla 93 :LGEYSAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30951 # 2fokA.111.194 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)G111 (2fokA)L195 because P (beta_P) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 2fokA 196 :PEGILLDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=30952 # 1zc6A.111.107 read from T0547.t2k.many.frag # found chain 1zc6A in template set T0547 111 :GSKAELLLA 1zc6A 108 :ATDGYTTLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30953 # 1jpzA.111.72 read from T0547.t2k.many.frag # found chain 1jpzA in template set Warning: unaligning (T0547)G111 (1jpzA)N70 because E (beta_S) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1jpzA 71 :LSQALKFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=30954 # 1su8A.111.406 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)G111 (1su8A)F407 because N (gamma') conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1su8A 408 :STEAIINA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30955 # 7odcA.112.90 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 112 :SKAELLLAM 7odcA 91 :SKTEIQLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30956 # 1knwA.112.75 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)S112 (1knwA)S76 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1knwA 77 :LGEIERAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30957 # 1rcqA.112.58 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 112 :SKAELLLAM 1rcqA 59 :CIEEGLELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30958 # 1z7xW.112.157 read from T0547.t2k.many.frag # found chain 1z7xW in template set T0547 112 :SKAELLLAM 1z7xW 157 :SCEPLASVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30959 # 1yxyA.112.56 read from T0547.t2k.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)S112 (1yxyA)S57 because S (epsilon) conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1yxyA 58 :VRDIKEIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=30960 # 1pii.112.118 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 112 :SKAELLLAM 1pii 119 :DPYQIYLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30961 # 1g8mA.112.34 read from T0547.t2k.many.frag # found chain 1g8mA in training set T0547 112 :SKAELLLAM 1g8mA 35 :SGGTATALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30962 # 1otsA.112.107 read from T0547.t2k.many.frag # found chain 1otsA in template set Warning: unaligning (T0547)S112 (1otsA)G108 because T (delta_L) conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1otsA 109 :IPEIEGAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30963 # 1n2zA.112.8 read from T0547.t2k.many.frag # found chain 1n2zA in template set T0547 112 :SKAELLLAM 1n2zA 30 :SPANTELAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30964 # 1pe9A.112.39 read from T0547.t2k.many.frag # found chain 1pe9A in training set T0547 112 :SKAELLLAM 1pe9A 40 :NISEFTSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30965 # 1od6A.112.12 read from T0547.t2k.many.frag # found chain 1od6A in training set T0547 112 :SKAELLLAM 1od6A 13 :TNGHLDVIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30966 # 1z70X.112.154 read from T0547.t2k.many.frag # found chain 1z70X in training set T0547 112 :SKAELLLAM 1z70X 1227 :TEAEWEYSC Number of specific fragments extracted= 1 number of extra gaps= 0 total=30967 # 1twdA.112.9 read from T0547.t2k.many.frag # found chain 1twdA in training set T0547 112 :SKAELLLAM 1twdA 10 :SMECALTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30968 # 1gkpA.112.132 read from T0547.t2k.many.frag # found chain 1gkpA in training set T0547 112 :SKAELLLAM 1gkpA 134 :TEGQLREIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30969 # 1mpxA.112.150 read from T0547.t2k.many.frag # found chain 1mpxA in template set T0547 112 :SKAELLLAM 1mpxA 173 :SSYEGFTVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30970 # 1t0fA.112.62 read from T0547.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)S112 (1t0fA)S60 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1t0fA 61 :DLELAVFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30971 # 1vp4A.112.117 read from T0547.t2k.many.frag # found chain 1vp4A in template set T0547 112 :SKAELLLAM 1vp4A 106 :SQQALDLIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30972 # 2etvA.112.32 read from T0547.t2k.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)A114 (2etvA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 112 :SK 2etvA 45 :GP T0547 115 :ELLLAM 2etvA 48 :ALRLIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30974 # 1mw5A.112.71 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 112 :SKAELLLAM 1mw5A 69 :SWLNLDDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30975 # 1jr2A.112.120 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)S112 (1jr2A)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1jr2A 101 :NATASLVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=30976 # 1xp8A.112.55 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)A114 (1xp8A)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 112 :SK 1xp8A 53 :ST T0547 115 :ELLLAM 1xp8A 56 :SLSLDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30978 2cw6A expands to /projects/compbio/data/pdb/2cw6.pdb.gz 2cw6A:# 2cw6A.112.81 read from T0547.t2k.many.frag # adding 2cw6A to template set # found chain 2cw6A in template set T0547 112 :SKAELLLAM 2cw6A 109 :NLKGFEAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30979 # 1y0zA.112.72 read from T0547.t2k.many.frag # found chain 1y0zA in template set T0547 112 :SKAELLLAM 1y0zA 73 :SADDFNDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30980 # 2fokA.112.195 read from T0547.t2k.many.frag # found chain 2fokA in template set T0547 112 :SKAELLLAM 2fokA 196 :PEGILLDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30981 # 1lnsA.112.471 read from T0547.t2k.many.frag # found chain 1lnsA in template set T0547 112 :SKAELLLAM 1lnsA 472 :TPEQAYNFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=30982 # 1ig0A.112.67 read from T0547.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0547)K113 (1ig0A)D69 because S (epsilon) conformation "forbidden" or filtered. T0547 112 :S 1ig0A 68 :A T0547 114 :AELLLAM 1ig0A 70 :GAANRLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30984 # 1mla.112.91 read from T0547.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0547)S112 (1mla)S92 because S (epsilon) conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1mla 93 :LGEYSALV Number of specific fragments extracted= 1 number of extra gaps= 1 total=30985 # 1sdeA.112.242 read from T0547.t2k.many.frag # found chain 1sdeA in template set T0547 112 :SKAELLLAM 1sdeA 243 :STQDLDTFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30986 # 1su8A.112.407 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 112 :SKAELLLAM 1su8A 408 :STEAIINAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30987 # 1wpnA.112.41 read from T0547.t2k.many.frag # found chain 1wpnA in training set Warning: unaligning (T0547)K113 (1wpnA)N43 because P (beta_P) conformation "forbidden" or filtered. T0547 112 :S 1wpnA 42 :V T0547 114 :AELLLAM 1wpnA 44 :GETQYAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30989 # 1knwA.113.76 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 113 :KAELLLAMA 1knwA 77 :LGEIERALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30990 # 7odcA.113.91 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 113 :KAELLLAMA 7odcA 92 :KTEIQLVQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30991 # 1rcqA.113.59 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 113 :KAELLLAMA 1rcqA 60 :IEEGLELRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30992 # 1z7xW.113.158 read from T0547.t2k.many.frag # found chain 1z7xW in template set T0547 113 :KAELLLAMA 1z7xW 158 :CEPLASVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30993 # 1pe9A.113.40 read from T0547.t2k.many.frag # found chain 1pe9A in training set T0547 113 :KAELLLAMA 1pe9A 41 :ISEFTSALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30994 # 1pii.113.119 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 113 :KAELLLAMA 1pii 120 :PYQIYLARY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30995 # 1g8mA.113.35 read from T0547.t2k.many.frag # found chain 1g8mA in training set T0547 113 :KAELLLAMA 1g8mA 36 :GGTATALRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30996 # 1n2zA.113.9 read from T0547.t2k.many.frag # found chain 1n2zA in template set T0547 113 :KAELLLAMA 1n2zA 31 :PANTELAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30997 # 1otsA.113.108 read from T0547.t2k.many.frag # found chain 1otsA in template set T0547 113 :KAELLLAMA 1otsA 109 :IPEIEGALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30998 # 1yxyA.113.57 read from T0547.t2k.many.frag # found chain 1yxyA in training set T0547 113 :KAELLLAMA 1yxyA 58 :VRDIKEIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30999 # 1mw5A.113.72 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 113 :KAELLLAMA 1mw5A 70 :WLNLDDALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31000 # 1jr2A.113.121 read from T0547.t2k.many.frag # found chain 1jr2A in template set T0547 113 :KAELLLAMA 1jr2A 101 :NATASLVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31001 # 1od6A.113.13 read from T0547.t2k.many.frag # found chain 1od6A in training set T0547 113 :KAELLLAMA 1od6A 14 :NGHLDVIQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31002 # 1twdA.113.10 read from T0547.t2k.many.frag # found chain 1twdA in training set T0547 113 :KAELLLAMA 1twdA 11 :MECALTAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31003 # 1gkpA.113.133 read from T0547.t2k.many.frag # found chain 1gkpA in training set T0547 113 :KAELLLAMA 1gkpA 135 :EGQLREIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31004 # 1z70X.113.155 read from T0547.t2k.many.frag # found chain 1z70X in training set T0547 113 :KAELLLAMA 1z70X 1228 :EAEWEYSCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31005 # 1tjyA.113.74 read from T0547.t2k.many.frag # found chain 1tjyA in training set T0547 113 :KAELLLAMA 1tjyA 99 :CPALKRAMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31006 # 1qtwA.113.91 read from T0547.t2k.many.frag # found chain 1qtwA in training set T0547 113 :KAELLLAMA 1qtwA 92 :IDEMQRCEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31007 # 2cw6A.113.82 read from T0547.t2k.many.frag # found chain 2cw6A in template set T0547 113 :KAELLLAMA 2cw6A 110 :LKGFEAAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31008 # 1lnsA.113.472 read from T0547.t2k.many.frag # found chain 1lnsA in template set T0547 113 :KAELLLAMA 1lnsA 473 :PEQAYNFWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31009 # 1mpxA.113.151 read from T0547.t2k.many.frag # found chain 1mpxA in template set T0547 113 :KAELLLAMA 1mpxA 174 :SYEGFTVVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=31010 # 1su8A.113.408 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 113 :KAELLLAMA 1su8A 409 :TEAIINALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31011 # 2etvA.113.33 read from T0547.t2k.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)A114 (2etvA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 113 :K 2etvA 46 :P T0547 115 :ELLLAMA 2etvA 48 :ALRLIAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=31013 # 1h4gA.113.159 read from T0547.t2k.many.frag # found chain 1h4gA in training set T0547 113 :KAELLLAMA 1h4gA 160 :SNHFRAWEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31014 # 1vp4A.113.118 read from T0547.t2k.many.frag # found chain 1vp4A in template set T0547 113 :KAELLLAMA 1vp4A 107 :QQALDLIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31015 2d13A expands to /projects/compbio/data/pdb/2d13.pdb.gz 2d13A:# 2d13A.113.17 read from T0547.t2k.many.frag # adding 2d13A to template set # found chain 2d13A in template set T0547 113 :KAELLLAMA 2d13A 18 :NYALYWALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31016 # 1xp8A.113.56 read from T0547.t2k.many.frag # found chain 1xp8A in template set T0547 113 :KAELLLAMA 1xp8A 54 :TGSLSLDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31017 # 1wpnA.113.42 read from T0547.t2k.many.frag # found chain 1wpnA in training set T0547 113 :KAELLLAMA 1wpnA 43 :NGETQYALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31018 # 1y0zA.113.73 read from T0547.t2k.many.frag # found chain 1y0zA in template set T0547 113 :KAELLLAMA 1y0zA 74 :ADDFNDVVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31019 # 1pot.113.60 read from T0547.t2k.many.frag # found chain 1pot in training set T0547 113 :KAELLLAMA 1pot 84 :TYYVDKMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31020 # 1knwA.114.77 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 114 :AELLLAMAY 1knwA 78 :GEIERALAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31021 # 7odcA.114.92 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 114 :AELLLAMAY 7odcA 93 :TEIQLVQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31022 # 1rcqA.114.60 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 114 :AELLLAMAY 1rcqA 61 :EEGLELREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31023 # 1z7xW.114.159 read from T0547.t2k.many.frag # found chain 1z7xW in template set T0547 114 :AELLLAMAY 1z7xW 159 :EPLASVLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31024 # 1g8mA.114.36 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)Y122 (1g8mA)A45 because G (3-10) conformation "forbidden" or filtered. T0547 114 :AELLLAMA 1g8mA 37 :GTATALRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=31025 # 1pe9A.114.41 read from T0547.t2k.many.frag # found chain 1pe9A in training set T0547 114 :AELLLAMAY 1pe9A 42 :SEFTSALSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31026 # 1n2zA.114.10 read from T0547.t2k.many.frag # found chain 1n2zA in template set T0547 114 :AELLLAMAY 1n2zA 32 :ANTELAFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31027 # 1pii.114.120 read from T0547.t2k.many.frag # found chain 1pii in template set Warning: unaligning (T0547)Y122 (1pii)Y129 because G (3-10) conformation "forbidden" or filtered. T0547 114 :AELLLAMA 1pii 121 :YQIYLARY Number of specific fragments extracted= 1 number of extra gaps= 1 total=31028 # 1jr2A.114.122 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)Y122 (1jr2A)I110 because G (3-10) conformation "forbidden" or filtered. T0547 114 :AELLLAMA 1jr2A 102 :ATASLVSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=31029 # 1mw5A.114.73 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 114 :AELLLAMAY 1mw5A 71 :LNLDDALQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31030 # 1otsA.114.109 read from T0547.t2k.many.frag # found chain 1otsA in template set Warning: unaligning (T0547)Y122 (1otsA)D118 because L (left) conformation "forbidden" or filtered. T0547 114 :AELLLAMA 1otsA 110 :PEIEGALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=31031 # 2cw6A.114.83 read from T0547.t2k.many.frag # found chain 2cw6A in template set T0547 114 :AELLLAMAY 2cw6A 111 :KGFEAAVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31032 # 1qtwA.114.92 read from T0547.t2k.many.frag # found chain 1qtwA in training set T0547 114 :AELLLAMAY 1qtwA 93 :DEMQRCEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31033 # 1twdA.114.11 read from T0547.t2k.many.frag # found chain 1twdA in training set T0547 114 :AELLLAMAY 1twdA 12 :ECALTAQQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31034 # 1yxyA.114.58 read from T0547.t2k.many.frag # found chain 1yxyA in training set T0547 114 :AELLLAMAY 1yxyA 59 :RDIKEIQAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31035 # 1od6A.114.14 read from T0547.t2k.many.frag # found chain 1od6A in training set T0547 114 :AELLLAMAY 1od6A 15 :GHLDVIQRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31036 # 1tjyA.114.75 read from T0547.t2k.many.frag # found chain 1tjyA in training set T0547 114 :AELLLAMAY 1tjyA 100 :PALKRAMQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31037 # 1lnsA.114.473 read from T0547.t2k.many.frag # found chain 1lnsA in template set T0547 114 :AELLLAMAY 1lnsA 474 :EQAYNFWKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31038 # 2d13A.114.18 read from T0547.t2k.many.frag # found chain 2d13A in template set T0547 114 :AELLLAMAY 2d13A 19 :YALYWALKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31039 # 1su8A.114.409 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 114 :AELLLAMAY 1su8A 410 :EAIINALSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31040 # 1gkpA.114.134 read from T0547.t2k.many.frag # found chain 1gkpA in training set T0547 114 :AELLLAMAY 1gkpA 136 :GQLREIVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31041 # 1h4gA.114.160 read from T0547.t2k.many.frag # found chain 1h4gA in training set T0547 114 :AELLLAMAY 1h4gA 161 :NHFRAWENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31042 # 1z70X.114.156 read from T0547.t2k.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)Y122 (1z70X)G1237 because L (left) conformation "forbidden" or filtered. T0547 114 :AELLLAMA 1z70X 1229 :AEWEYSCR Number of specific fragments extracted= 1 number of extra gaps= 1 total=31043 # 2etvA.114.34 read from T0547.t2k.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)A114 (2etvA)G47 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y122 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)A57 T0547 115 :ELLLAMA 2etvA 48 :ALRLIAY Number of specific fragments extracted= 1 number of extra gaps= 1 total=31044 # 1vp4A.114.119 read from T0547.t2k.many.frag # found chain 1vp4A in template set T0547 114 :AELLLAMAY 1vp4A 108 :QALDLIGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31045 # 1mpxA.114.152 read from T0547.t2k.many.frag # found chain 1mpxA in template set T0547 114 :AELLLAMAY 1mpxA 175 :YEGFTVVMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31046 # 1tuoA.114.130 read from T0547.t2k.many.frag # found chain 1tuoA in training set T0547 114 :AELLLAMAY 1tuoA 131 :EEAKAIEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31047 # 1xp8A.114.57 read from T0547.t2k.many.frag # found chain 1xp8A in template set T0547 114 :AELLLAMAY 1xp8A 55 :GSLSLDLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31048 # 1p3dA.114.91 read from T0547.t2k.many.frag # found chain 1p3dA in training set T0547 114 :AELLLAMAY 1p3dA 92 :PELVTSKQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31049 1i0dA expands to /projects/compbio/data/pdb/1i0d.pdb.gz 1i0dA:Skipped atom 584, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 586, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 593, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 953, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 955, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 957, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 959, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 961, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 963, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 965, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 967, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 1246, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 1248, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 1250, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 1442, because occupancy 0.300 <= existing 0.700 in 1i0dA Skipped atom 1561, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 1587, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 1589, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 1591, because occupancy 0.500 <= existing 0.500 in 1i0dA Skipped atom 1997, because occupancy 0.330 <= existing 0.330 in 1i0dA Skipped atom 1998, because occupancy 0.330 <= existing 0.330 in 1i0dA Skipped atom 2000, because occupancy 0.330 <= existing 0.330 in 1i0dA Skipped atom 2001, because occupancy 0.330 <= existing 0.330 in 1i0dA Skipped atom 2003, because occupancy 0.330 <= existing 0.330 in 1i0dA Skipped atom 2004, because occupancy 0.330 <= existing 0.330 in 1i0dA Skipped atom 2006, because occupancy 0.330 <= existing 0.330 in 1i0dA Skipped atom 2007, because occupancy 0.330 <= existing 0.330 in 1i0dA Skipped atom 2512, because occupancy 0.500 <= existing 0.500 in 1i0dA # 1i0dA.114.51 read from T0547.t2k.many.frag # adding 1i0dA to template set # found chain 1i0dA in template set T0547 114 :AELLLAMAY 1i0dA 85 :RGLRRARAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31050 # 1knwA.115.78 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N123 (1knwA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1knwA 79 :EIERALAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=31051 # 7odcA.115.93 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 115 :ELLLAMAYN 7odcA 94 :EIQLVQGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31052 # 1rcqA.115.61 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N123 (1rcqA)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1rcqA 62 :EGLELREA Number of specific fragments extracted= 1 number of extra gaps= 1 total=31053 # 1z7xW.115.160 read from T0547.t2k.many.frag # found chain 1z7xW in template set T0547 115 :ELLLAMAYN 1z7xW 160 :PLASVLRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31054 # 1g8mA.115.37 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)N123 (1g8mA)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1g8mA 38 :TATALRDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=31055 # 1pe9A.115.42 read from T0547.t2k.many.frag # found chain 1pe9A in training set T0547 115 :ELLLAMAYN 1pe9A 43 :EFTSALSAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31056 # 1n2zA.115.11 read from T0547.t2k.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)N123 (1n2zA)G41 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1n2zA 33 :NTELAFAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=31057 # 1jr2A.115.123 read from T0547.t2k.many.frag # found chain 1jr2A in template set T0547 115 :ELLLAMAYN 1jr2A 103 :TASLVSKIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31058 # 1mw5A.115.74 read from T0547.t2k.many.frag # found chain 1mw5A in template set Warning: unaligning (T0547)N123 (1mw5A)V80 because P (beta_P) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1mw5A 72 :NLDDALQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=31059 # 1pii.115.121 read from T0547.t2k.many.frag # found chain 1pii in template set Warning: unaligning (T0547)N123 (1pii)Q130 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1pii 122 :QIYLARYY Number of specific fragments extracted= 1 number of extra gaps= 1 total=31060 # 1otsA.115.110 read from T0547.t2k.many.frag # found chain 1otsA in template set T0547 115 :ELLLAMAYN 1otsA 111 :EIEGALEDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31061 # 2d13A.115.19 read from T0547.t2k.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)N123 (2d13A)G28 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 2d13A 20 :ALYWALKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=31062 # 1twdA.115.12 read from T0547.t2k.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)N123 (1twdA)G21 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1twdA 13 :CALTAQQN Number of specific fragments extracted= 1 number of extra gaps= 1 total=31063 # 1lnsA.115.474 read from T0547.t2k.many.frag # found chain 1lnsA in template set T0547 115 :ELLLAMAYN 1lnsA 475 :QAYNFWKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31064 # 2cw6A.115.84 read from T0547.t2k.many.frag # found chain 2cw6A in template set T0547 115 :ELLLAMAYN 2cw6A 112 :GFEAAVAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31065 # 1z70X.115.157 read from T0547.t2k.many.frag # found chain 1z70X in training set T0547 115 :ELLLAMAYN 1z70X 1230 :EWEYSCRGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31066 # 1qtwA.115.93 read from T0547.t2k.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)N123 (1qtwA)G102 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1qtwA 94 :EMQRCEQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=31067 # 1su8A.115.410 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 115 :ELLLAMAYN 1su8A 411 :AIINALSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31068 # 1gkpA.115.135 read from T0547.t2k.many.frag # found chain 1gkpA in training set T0547 115 :ELLLAMAYN 1gkpA 137 :QLREIVADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31069 # 1h4gA.115.161 read from T0547.t2k.many.frag # found chain 1h4gA in training set Warning: unaligning (T0547)N123 (1h4gA)G170 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1h4gA 162 :HFRAWENL Number of specific fragments extracted= 1 number of extra gaps= 1 total=31070 # 1tjyA.115.76 read from T0547.t2k.many.frag # found chain 1tjyA in training set T0547 115 :ELLLAMAYN 1tjyA 101 :ALKRAMQRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31071 # 1ccwB.115.235 read from T0547.t2k.many.frag # found chain 1ccwB in training set T0547 115 :ELLLAMAYN 1ccwB 236 :EALLAAEQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31072 # 1i0dA.115.52 read from T0547.t2k.many.frag # found chain 1i0dA in template set T0547 115 :ELLLAMAYN 1i0dA 86 :GLRRARAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31073 # 1tuoA.115.131 read from T0547.t2k.many.frag # found chain 1tuoA in training set T0547 115 :ELLLAMAYN 1tuoA 132 :EAKAIEALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31074 # 1xp8A.115.58 read from T0547.t2k.many.frag # found chain 1xp8A in template set T0547 115 :ELLLAMAYN 1xp8A 56 :SLSLDLALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31075 # 1p3dA.115.92 read from T0547.t2k.many.frag # found chain 1p3dA in training set T0547 115 :ELLLAMAYN 1p3dA 93 :ELVTSKQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31076 # 2etvA.115.35 read from T0547.t2k.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)Y122 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)A57 T0547 115 :ELLLAMA 2etvA 48 :ALRLIAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31077 # 1vd6A.115.133 read from T0547.t2k.many.frag # found chain 1vd6A in training set T0547 115 :ELLLAMAYN 1vd6A 134 :ALLALRKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31078 # 1zc6A.115.111 read from T0547.t2k.many.frag # found chain 1zc6A in template set T0547 115 :ELLLAMAYN 1zc6A 112 :YTTLLGAHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31079 # 1yxyA.115.59 read from T0547.t2k.many.frag # found chain 1yxyA in training set T0547 115 :ELLLAMAYN 1yxyA 60 :DIKEIQAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31080 # 1knwA.116.79 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 116 :LLLAMAYNN 1knwA 80 :IERALAAGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31081 # 1rcqA.116.62 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N123 (1rcqA)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1rcqA 63 :GLELREA T0547 124 :N 1rcqA 71 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=31083 # 7odcA.116.94 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N123 (7odcA)G102 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 7odcA 95 :IQLVQGL T0547 124 :N 7odcA 103 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=31085 # 1z7xW.116.161 read from T0547.t2k.many.frag # found chain 1z7xW in template set T0547 116 :LLLAMAYNN 1z7xW 161 :LASVLRAKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31086 # 1g8mA.116.38 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)N123 (1g8mA)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1g8mA 39 :ATALRDA T0547 124 :N 1g8mA 47 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=31088 # 1pe9A.116.43 read from T0547.t2k.many.frag # found chain 1pe9A in training set T0547 116 :LLLAMAYNN 1pe9A 44 :FTSALSAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31089 # 1jr2A.116.124 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)Y122 (1jr2A)I110 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (1jr2A)G111 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 T0547 116 :LLLAMA 1jr2A 104 :ASLVSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=31090 # 1n2zA.116.12 read from T0547.t2k.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)N123 (1n2zA)G41 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1n2zA 34 :TELAFAA T0547 124 :N 1n2zA 42 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=31092 # 1mw5A.116.75 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 116 :LLLAMAYNN 1mw5A 73 :LDDALQAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31093 # 2d13A.116.20 read from T0547.t2k.many.frag # found chain 2d13A in template set T0547 116 :LLLAMAYNN 2d13A 21 :LYWALKSGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31094 # 1pii.116.122 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 116 :LLLAMAYNN 1pii 123 :IYLARYYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31095 # 1lnsA.116.475 read from T0547.t2k.many.frag # found chain 1lnsA in template set T0547 116 :LLLAMAYNN 1lnsA 476 :AYNFWKALP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31096 # 1otsA.116.111 read from T0547.t2k.many.frag # found chain 1otsA in template set Warning: unaligning (T0547)Y122 (1otsA)D118 because L (left) conformation "forbidden" or filtered. T0547 116 :LLLAMA 1otsA 112 :IEGALE T0547 123 :NN 1otsA 119 :QR Number of specific fragments extracted= 2 number of extra gaps= 1 total=31098 # 1ccwB.116.236 read from T0547.t2k.many.frag # found chain 1ccwB in training set Warning: unaligning (T0547)Y122 (1ccwB)Q243 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1ccwB)V245 because P (beta_P) conformation "forbidden" or filtered. T0547 116 :LLLAMA 1ccwB 237 :ALLAAE T0547 123 :N 1ccwB 244 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=31100 # 1z70X.116.158 read from T0547.t2k.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)Y122 (1z70X)G1237 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1z70X)L1239 because P (beta_P) conformation "forbidden" or filtered. T0547 116 :LLLAMA 1z70X 1231 :WEYSCR T0547 123 :N 1z70X 1238 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=31102 # 1qtwA.116.94 read from T0547.t2k.many.frag # found chain 1qtwA in training set T0547 116 :LLLAMAYNN 1qtwA 95 :MQRCEQLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31103 # 1f1eA.116.9 read from T0547.t2k.many.frag # found chain 1f1eA in training set T0547 116 :LLLAMAYNN 1f1eA 10 :IERIFRQGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31104 # 1su8A.116.411 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 116 :LLLAMAYNN 1su8A 412 :IINALSKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31105 # 1tjyA.116.77 read from T0547.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)N124 (1tjyA)V110 because P (beta_P) conformation "forbidden" or filtered. T0547 116 :LLLAMAYN 1tjyA 102 :LKRAMQRG Number of specific fragments extracted= 1 number of extra gaps= 1 total=31106 # 1twdA.116.13 read from T0547.t2k.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)N123 (1twdA)G21 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1twdA 14 :ALTAQQN T0547 124 :N 1twdA 22 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=31108 # 1zc6A.116.112 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)N124 (1zc6A)G121 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAYN 1zc6A 113 :TTLLGAHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=31109 # 1t7lA.116.246 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 116 :LLLAMAYNN 1t7lA 215 :ILNVYRELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31110 # 2b1eA.116.150 read from T0547.t2k.many.frag # found chain 2b1eA in template set T0547 116 :LLLAMAYNN 2b1eA 210 :ILKCMAFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31111 # 1wcwA.116.101 read from T0547.t2k.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)N123 (1wcwA)G109 because L (left) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1wcwA 102 :ARALKEA T0547 124 :N 1wcwA 110 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=31113 # 2cw6A.116.85 read from T0547.t2k.many.frag # found chain 2cw6A in template set Warning: unaligning (T0547)N123 (2cw6A)G120 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 2cw6A 113 :FEAAVAA T0547 124 :N 2cw6A 121 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=31115 # 1xp8A.116.59 read from T0547.t2k.many.frag # found chain 1xp8A in template set T0547 116 :LLLAMAYNN 1xp8A 57 :LSLDLALGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31116 1ho8A expands to /projects/compbio/data/pdb/1ho8.pdb.gz 1ho8A:# 1ho8A.116.292 read from T0547.t2k.many.frag # adding 1ho8A to template set # found chain 1ho8A in template set T0547 116 :LLLAMAYNN 1ho8A 291 :ISIILQCCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31117 # 1vd6A.116.134 read from T0547.t2k.many.frag # found chain 1vd6A in training set T0547 116 :LLLAMAYNN 1vd6A 135 :LLALRKAAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31118 # 1tf5A.116.470 read from T0547.t2k.many.frag # found chain 1tf5A in template set T0547 116 :LLLAMAYNN 1tf5A 468 :AQIIEEAGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31119 # 1p3dA.116.93 read from T0547.t2k.many.frag # found chain 1p3dA in training set T0547 116 :LLLAMAYNN 1p3dA 94 :LVTSKQKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31120 # 1rcqA.117.63 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 117 :LLAMAYNNE 1rcqA 64 :LELREAGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31121 # 1g8mA.117.39 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)N123 (1g8mA)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1g8mA 40 :TALRDA T0547 124 :NE 1g8mA 47 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=31123 # 1knwA.117.80 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N123 (1knwA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1knwA 81 :ERALAA T0547 124 :NE 1knwA 88 :YN Number of specific fragments extracted= 2 number of extra gaps= 1 total=31125 # 1n2zA.117.13 read from T0547.t2k.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)N123 (1n2zA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1n2zA)I42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1n2zA)T43 because D (zeta) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1n2zA 35 :ELAFAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=31126 # 7odcA.117.95 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N124 (7odcA)V103 because P (beta_P) conformation "forbidden" or filtered. T0547 117 :LLAMAYN 7odcA 96 :QLVQGLG T0547 125 :E 7odcA 104 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=31128 # 1z7xW.117.162 read from T0547.t2k.many.frag # found chain 1z7xW in template set T0547 117 :LLAMAYNNE 1z7xW 162 :ASVLRAKPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31129 # 1pe9A.117.44 read from T0547.t2k.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)N123 (1pe9A)G51 because S (epsilon) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1pe9A 45 :TSALSA T0547 124 :NE 1pe9A 52 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31131 # 1jr2A.117.125 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)N123 (1jr2A)G111 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 Warning: unaligning (T0547)E125 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)D113 T0547 117 :LLAMAY 1jr2A 105 :SLVSKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=31132 # 1ccwB.117.237 read from T0547.t2k.many.frag # found chain 1ccwB in training set Warning: unaligning (T0547)N123 (1ccwB)G244 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1ccwB 238 :LLAAEQ T0547 124 :NE 1ccwB 245 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31134 # 2d13A.117.21 read from T0547.t2k.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)N123 (2d13A)G28 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (2d13A)R30 because N (gamma') conformation "forbidden" or filtered. T0547 117 :LLAMAY 2d13A 22 :YWALKS T0547 124 :N 2d13A 29 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=31136 # 1mw5A.117.76 read from T0547.t2k.many.frag # found chain 1mw5A in template set Warning: unaligning (T0547)N124 (1mw5A)V81 because P (beta_P) conformation "forbidden" or filtered. T0547 117 :LLAMAYN 1mw5A 74 :DDALQAV T0547 125 :E 1mw5A 82 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=31138 # 1lnsA.117.476 read from T0547.t2k.many.frag # found chain 1lnsA in template set Warning: unaligning (T0547)N123 (1lnsA)L483 because P (beta_P) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1lnsA 477 :YNFWKA T0547 124 :NE 1lnsA 484 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31140 # 1f1eA.117.10 read from T0547.t2k.many.frag # found chain 1f1eA in training set Warning: unaligning (T0547)E125 (1f1eA)G19 because S (epsilon) conformation "forbidden" or filtered. T0547 117 :LLAMAYNN 1f1eA 11 :ERIFRQGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=31141 # 1wcwA.117.102 read from T0547.t2k.many.frag # found chain 1wcwA in training set T0547 117 :LLAMAYNNE 1wcwA 103 :RALKEAGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31142 # 1wusA.117.51 read from T0547.t2k.many.frag # found chain 1wusA in template set T0547 117 :LLAMAYNNE 1wusA 127 :EHCLKHGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31143 # 1z70X.117.159 read from T0547.t2k.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)Y122 (1z70X)G1237 because L (left) conformation "forbidden" or filtered. T0547 117 :LLAMA 1z70X 1232 :EYSCR T0547 123 :NNE 1z70X 1238 :GLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=31145 # 1vlpA.117.228 read from T0547.t2k.many.frag # found chain 1vlpA in training set T0547 117 :LLAMAYNNE 1vlpA 217 :LFAKKYGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31146 # 1zc6A.117.113 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)Y122 (1zc6A)H119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1zc6A)G121 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1zc6A)Q122 because P (beta_P) conformation "forbidden" or filtered. T0547 117 :LLAMA 1zc6A 114 :TLLGA T0547 123 :N 1zc6A 120 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=31148 # 1pii.117.123 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 117 :LLAMAYNNE 1pii 124 :YLARYYQAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31149 # 1otsA.117.112 read from T0547.t2k.many.frag # found chain 1otsA in template set T0547 117 :LLAMAYNNE 1otsA 113 :EGALEDQRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31150 # 1dd9A.117.153 read from T0547.t2k.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)Y122 (1dd9A)D254 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1dd9A)E257 because D (zeta) conformation "forbidden" or filtered. T0547 117 :LLAMA 1dd9A 249 :YEAQQ T0547 123 :NN 1dd9A 255 :NA Number of specific fragments extracted= 2 number of extra gaps= 2 total=31152 # 1su8A.117.412 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 117 :LLAMAYNNE 1su8A 413 :INALSKLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31153 1rz4A expands to /projects/compbio/data/pdb/1rz4.pdb.gz 1rz4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1rz4A.117.70 read from T0547.t2k.many.frag # adding 1rz4A to template set # found chain 1rz4A in template set Warning: unaligning (T0547)N124 (1rz4A)P78 because C (cis) conformation "forbidden" or filtered. T0547 117 :LLAMAYN 1rz4A 71 :LKALTNL T0547 125 :E 1rz4A 79 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=31155 1v72A expands to /projects/compbio/data/pdb/1v72.pdb.gz 1v72A:# 1v72A.117.72 read from T0547.t2k.many.frag # adding 1v72A to template set # found chain 1v72A in template set T0547 117 :LLAMAYNNE 1v72A 73 :ALCLSAMTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31156 # 2fokA.117.200 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)N124 (2fokA)M208 because P (beta_P) conformation "forbidden" or filtered. T0547 117 :LLAMAYN 2fokA 201 :LDTLANA T0547 125 :E 2fokA 209 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=31158 # 1b8oA.117.225 read from T0547.t2k.many.frag # found chain 1b8oA in training set T0547 117 :LLAMAYNNE 1b8oA 226 :IVARHCGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31159 # 1xp8A.117.60 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)N123 (1xp8A)G64 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1xp8A)V65 because G (3-10) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1xp8A 58 :SLDLAL T0547 125 :E 1xp8A 66 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=31161 # 1oxxK.117.149 read from T0547.t2k.many.frag # found chain 1oxxK in training set T0547 117 :LLAMAYNNE 1oxxK 150 :ALARALVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31162 # 1ig0A.117.72 read from T0547.t2k.many.frag # found chain 1ig0A in training set T0547 117 :LLAMAYNNE 1ig0A 73 :NRLYDYLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31163 # 1vd6A.117.135 read from T0547.t2k.many.frag # found chain 1vd6A in training set T0547 117 :LLAMAYNNE 1vd6A 136 :LALRKAAPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31164 # 1n2zA.118.14 read from T0547.t2k.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)N123 (1n2zA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1n2zA)I42 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAY 1n2zA 36 :LAFAA T0547 125 :EG 1n2zA 43 :TP Number of specific fragments extracted= 2 number of extra gaps= 1 total=31166 # 7odcA.118.96 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N123 (7odcA)G102 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (7odcA)P104 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAY 7odcA 97 :LVQGL T0547 124 :N 7odcA 103 :V T0547 126 :G 7odcA 105 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=31169 # 1rcqA.118.64 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N124 (1rcqA)I71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1rcqA)Q73 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAYN 1rcqA 65 :ELREAG T0547 125 :E 1rcqA 72 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=31171 # 1g8mA.118.40 read from T0547.t2k.many.frag # found chain 1g8mA in training set T0547 118 :LAMAYNNEG 1g8mA 41 :ALRDAGLPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31172 # 1z7xW.118.163 read from T0547.t2k.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)G126 (1z7xW)F171 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAYNNE 1z7xW 163 :SVLRAKPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=31173 # 1jr2A.118.126 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)N124 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 Warning: unaligning (T0547)E125 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)D113 Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)T114 T0547 118 :LAMAYN 1jr2A 106 :LVSKIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=31174 # 1knwA.118.81 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N124 (1knwA)Y88 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1knwA)N89 because D (zeta) conformation "forbidden" or filtered. T0547 118 :LAMAYN 1knwA 82 :RALAAG T0547 126 :G 1knwA 90 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=31176 # 1pe9A.118.45 read from T0547.t2k.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)N124 (1pe9A)A52 because G (3-10) conformation "forbidden" or filtered. T0547 118 :LAMAYN 1pe9A 46 :SALSAG T0547 125 :EG 1pe9A 53 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31178 # 1lnsA.118.477 read from T0547.t2k.many.frag # found chain 1lnsA in template set Warning: unaligning (T0547)N124 (1lnsA)P484 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAYN 1lnsA 478 :NFWKAL T0547 125 :EG 1lnsA 485 :EG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31180 # 1ccwB.118.238 read from T0547.t2k.many.frag # found chain 1ccwB in training set Warning: unaligning (T0547)Y122 (1ccwB)Q243 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (1ccwB)G244 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1ccwB)V245 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMA 1ccwB 239 :LAAE T0547 125 :EG 1ccwB 246 :KN Number of specific fragments extracted= 2 number of extra gaps= 1 total=31182 # 1f1eA.118.11 read from T0547.t2k.many.frag # found chain 1f1eA in training set Warning: unaligning (T0547)E125 (1f1eA)G19 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1f1eA)E20 because G (3-10) conformation "forbidden" or filtered. T0547 118 :LAMAYNN 1f1eA 12 :RIFRQGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=31183 # 1vlpA.118.229 read from T0547.t2k.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)Y122 (1vlpA)Y222 because G (3-10) conformation "forbidden" or filtered. T0547 118 :LAMA 1vlpA 218 :FAKK T0547 123 :NNEG 1vlpA 223 :GVKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=31185 # 2d13A.118.22 read from T0547.t2k.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)Y122 (2d13A)S27 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (2d13A)V31 because N (gamma') conformation "forbidden" or filtered. T0547 118 :LAMA 2d13A 23 :WALK T0547 123 :NNE 2d13A 28 :GLR Number of specific fragments extracted= 2 number of extra gaps= 2 total=31187 # 1wcwA.118.103 read from T0547.t2k.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)E125 (1wcwA)P111 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAYNN 1wcwA 104 :ALKEAGL T0547 126 :G 1wcwA 112 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=31189 # 1zc6A.118.114 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)N123 (1zc6A)G120 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1zc6A)P123 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAY 1zc6A 115 :LLGAH T0547 124 :NE 1zc6A 121 :GQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=31191 # 1v72A.118.73 read from T0547.t2k.many.frag # found chain 1v72A in template set T0547 118 :LAMAYNNEG 1v72A 74 :LCLSAMTPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31192 # 1ct5A.118.75 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 T0547 118 :LAMAYNNE 1ct5A 77 :EKAKLLPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=31193 # 1wusA.118.52 read from T0547.t2k.many.frag # found chain 1wusA in template set Warning: unaligning (T0547)N123 (1wusA)G133 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1wusA)L134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wusA)N144 T0547 118 :LAMAY 1wusA 128 :HCLKH T0547 125 :E 1wusA 135 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=31195 # 1mw5A.118.77 read from T0547.t2k.many.frag # found chain 1mw5A in template set Warning: unaligning (T0547)N124 (1mw5A)V81 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAYN 1mw5A 75 :DALQAV T0547 125 :EG 1mw5A 82 :GN Number of specific fragments extracted= 2 number of extra gaps= 1 total=31197 # 1ru4A.118.39 read from T0547.t2k.many.frag # found chain 1ru4A in training set T0547 118 :LAMAYNNEG 1ru4A 65 :AAMAAVNPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31198 # 1dd9A.118.154 read from T0547.t2k.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)N123 (1dd9A)N255 because D (zeta) conformation "forbidden" or filtered. T0547 118 :LAMAY 1dd9A 250 :EAQQD T0547 124 :NEG 1dd9A 256 :AEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=31200 # 1ig0A.118.73 read from T0547.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0547)N124 (1ig0A)D80 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1ig0A)D82 because E (beta_S) conformation "forbidden" or filtered. T0547 118 :LAMAYN 1ig0A 74 :RLYDYL T0547 125 :E 1ig0A 81 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=31202 # 1e9rA.118.92 read from T0547.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)N123 (1e9rA)G168 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAY 1e9rA 163 :MLSKF T0547 124 :NEG 1e9rA 169 :RDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31204 # 1oxxK.118.150 read from T0547.t2k.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)E125 (1oxxK)D158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1oxxK)P159 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAYNN 1oxxK 151 :LARALVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=31205 # 1x7dA.118.119 read from T0547.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0547)N123 (1x7dA)A125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1x7dA)N128 because G (3-10) conformation "forbidden" or filtered. T0547 118 :LAMAY 1x7dA 120 :AAQAL T0547 124 :NE 1x7dA 126 :RP Number of specific fragments extracted= 2 number of extra gaps= 2 total=31207 # 1z70X.118.160 read from T0547.t2k.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)Y122 (1z70X)G1237 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1z70X)H1240 because E (beta_S) conformation "forbidden" or filtered. T0547 118 :LAMA 1z70X 1233 :YSCR T0547 123 :NN 1z70X 1238 :GL T0547 126 :G 1z70X 1241 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=31210 # 1vd6A.118.136 read from T0547.t2k.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)G126 (1vd6A)L145 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAYNNE 1vd6A 137 :ALRKAAPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=31211 # 2absA.118.96 read from T0547.t2k.many.frag # found chain 2absA in training set Warning: unaligning (T0547)G126 (2absA)P85 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAYNNE 2absA 77 :VVQKLLRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=31212 # 1m2oA.118.145 read from T0547.t2k.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)G126 (1m2oA)N154 because G (3-10) conformation "forbidden" or filtered. T0547 118 :LAMAYNNE 1m2oA 146 :TSLSLLPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=31213 # 1tf5A.118.472 read from T0547.t2k.many.frag # found chain 1tf5A in template set T0547 118 :LAMAYNNEG 1tf5A 470 :IIEEAGQKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31214 # 7odcA.119.97 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N123 (7odcA)G102 because T (delta_L) conformation "forbidden" or filtered. T0547 119 :AMAY 7odcA 98 :VQGL T0547 124 :NEGA 7odcA 103 :VPAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31216 # 1n2zA.119.15 read from T0547.t2k.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)N123 (1n2zA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1n2zA)P44 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAY 1n2zA 37 :AFAA T0547 124 :NE 1n2zA 42 :IT T0547 127 :A 1n2zA 45 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=31219 # 1x7dA.119.120 read from T0547.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0547)A127 (1x7dA)A129 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAYNNEG 1x7dA 121 :AQALARPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=31220 # 1ct5A.119.76 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 119 :AMAYNNE 1ct5A 78 :KAKLLPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=31221 # 1z7xW.119.164 read from T0547.t2k.many.frag # found chain 1z7xW in template set T0547 119 :AMAYNNEGA 1z7xW 164 :VLRAKPDFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31222 # 1e9rA.119.93 read from T0547.t2k.many.frag # found chain 1e9rA in template set T0547 119 :AMAYNNEGA 1e9rA 164 :LSKFGRDKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31223 # 1zc6A.119.115 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)N123 (1zc6A)G120 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1zc6A)G121 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1zc6A)P123 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1zc6A)G124 because Y (epsilon') conformation "forbidden" or filtered. T0547 119 :AMAY 1zc6A 116 :LGAH T0547 125 :E 1zc6A 122 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=31225 # 1lnsA.119.478 read from T0547.t2k.many.frag # found chain 1lnsA in template set Warning: unaligning (T0547)N123 (1lnsA)L483 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1lnsA)P484 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAY 1lnsA 479 :FWKA T0547 125 :EGA 1lnsA 485 :EGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=31227 # 1jr2A.119.127 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)N124 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 Warning: unaligning (T0547)E125 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)D113 Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)T114 T0547 119 :AMAYN 1jr2A 107 :VSKIG T0547 127 :A 1jr2A 115 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=31229 # 1v72A.119.74 read from T0547.t2k.many.frag # found chain 1v72A in template set Warning: unaligning (T0547)Y122 (1v72A)A78 because G (3-10) conformation "forbidden" or filtered. T0547 119 :AMA 1v72A 75 :CLS T0547 123 :NNEGA 1v72A 79 :MTPPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=31231 # 1oxxK.119.151 read from T0547.t2k.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)G126 (1oxxK)P159 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAYNNE 1oxxK 152 :ARALVKD T0547 127 :A 1oxxK 160 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=31233 # 1f1eA.119.12 read from T0547.t2k.many.frag # found chain 1f1eA in training set Warning: unaligning (T0547)E125 (1f1eA)G19 because S (epsilon) conformation "forbidden" or filtered. T0547 119 :AMAYNN 1f1eA 13 :IFRQGI T0547 126 :GA 1f1eA 20 :ER Number of specific fragments extracted= 2 number of extra gaps= 1 total=31235 # 1rcqA.119.65 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G126 (1rcqA)Q73 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAYNNE 1rcqA 66 :LREAGIR T0547 127 :A 1rcqA 74 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=31237 # 1ej0A.119.39 read from T0547.t2k.many.frag # found chain 1ej0A in training set T0547 119 :AMAYNNEGA 1ej0A 69 :VVTQIGGKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31238 # 1g8mA.119.41 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)E125 (1g8mA)P48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1g8mA)V49 because E (beta_S) conformation "forbidden" or filtered. T0547 119 :AMAYNN 1g8mA 42 :LRDAGL T0547 127 :A 1g8mA 50 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=31240 # 2absA.119.97 read from T0547.t2k.many.frag # found chain 2absA in training set Warning: unaligning (T0547)E125 (2absA)K84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (2absA)G86 because T (delta_L) conformation "forbidden" or filtered. T0547 119 :AMAYNN 2absA 78 :VQKLLR T0547 126 :G 2absA 85 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=31242 # 1ccwB.119.239 read from T0547.t2k.many.frag # found chain 1ccwB in training set Warning: unaligning (T0547)G126 (1ccwB)N247 because D (zeta) conformation "forbidden" or filtered. T0547 119 :AMAYNNE 1ccwB 240 :AAEQGVK T0547 127 :A 1ccwB 248 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=31244 # 1ru4A.119.40 read from T0547.t2k.many.frag # found chain 1ru4A in training set T0547 119 :AMAYNNEGA 1ru4A 66 :AMAAVNPGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31245 # 1pe9A.119.46 read from T0547.t2k.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)N123 (1pe9A)G51 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1pe9A)E53 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAY 1pe9A 47 :ALSA T0547 124 :N 1pe9A 52 :A T0547 126 :GA 1pe9A 54 :AK Number of specific fragments extracted= 3 number of extra gaps= 2 total=31248 # 1vlpA.119.230 read from T0547.t2k.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)G126 (1vlpA)P226 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAYNNE 1vlpA 219 :AKKYGVK T0547 127 :A 1vlpA 227 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=31250 # 2d13A.119.23 read from T0547.t2k.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)N123 (2d13A)G28 because T (delta_L) conformation "forbidden" or filtered. T0547 119 :AMAY 2d13A 24 :ALKS T0547 124 :NEGA 2d13A 29 :LRVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=31252 # 1m2oA.119.146 read from T0547.t2k.many.frag # found chain 1m2oA in template set T0547 119 :AMAYNNEGA 1m2oA 147 :SLSLLPPNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31253 # 1knwA.119.82 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N123 (1knwA)G87 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1knwA)Y88 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAY 1knwA 83 :ALAA T0547 125 :EGA 1knwA 89 :NPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=31255 # 1wcwA.119.104 read from T0547.t2k.many.frag # found chain 1wcwA in training set T0547 119 :AMAYNNEGA 1wcwA 105 :LKEAGLPPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=31256 1c7nA expands to /projects/compbio/data/pdb/1c7n.pdb.gz 1c7nA:# 1c7nA.119.105 read from T0547.t2k.many.frag # adding 1c7nA to template set # found chain 1c7nA in template set Warning: unaligning (T0547)N123 (1c7nA)T110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1c7nA)P112 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAY 1c7nA 106 :VREF T0547 124 :N 1c7nA 111 :K T0547 126 :GA 1c7nA 113 :GD Number of specific fragments extracted= 3 number of extra gaps= 2 total=31259 1pswA expands to /projects/compbio/data/pdb/1psw.pdb.gz 1pswA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1pswA.119.96 read from T0547.t2k.many.frag # adding 1pswA to template set # found chain 1pswA in template set Warning: unaligning (T0547)G126 (1pswA)H104 because E (beta_S) conformation "forbidden" or filtered. T0547 119 :AMAYNNE 1pswA 97 :PLFAGIP T0547 127 :A 1pswA 105 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=31261 # 1wusA.119.53 read from T0547.t2k.many.frag # found chain 1wusA in template set Warning: unaligning (T0547)N123 (1wusA)G133 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wusA)N144 T0547 119 :AMAY 1wusA 129 :CLKH T0547 124 :NE 1wusA 134 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31263 # 1gxyA.119.111 read from T0547.t2k.many.frag # found chain 1gxyA in training set Warning: unaligning (T0547)E125 (1gxyA)N118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1gxyA)G119 because G (3-10) conformation "forbidden" or filtered. T0547 119 :AMAYNN 1gxyA 112 :ALQLLS T0547 127 :A 1gxyA 120 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=31265 # 1mw5A.119.78 read from T0547.t2k.many.frag # found chain 1mw5A in template set T0547 119 :AMAYNNEGA 1mw5A 76 :ALQAVVGNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31266 1wzuA expands to /projects/compbio/data/pdb/1wzu.pdb.gz 1wzuA:# 1wzuA.119.42 read from T0547.t2k.many.frag # adding 1wzuA to template set # found chain 1wzuA in template set Warning: unaligning (T0547)N123 (1wzuA)R47 because L (left) conformation "forbidden" or filtered. T0547 119 :AMAY 1wzuA 43 :RRAT T0547 124 :NEGA 1wzuA 48 :VDAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=31268 # 7odcA.120.98 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y122 (7odcA)L101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (7odcA)G102 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (7odcA)V103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 120 :MA 7odcA 99 :QG T0547 125 :EGA 7odcA 104 :PAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=31270 # 1oxxK.120.152 read from T0547.t2k.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)E125 (1oxxK)D158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1oxxK)L161 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNN 1oxxK 153 :RALVK T0547 126 :GA 1oxxK 159 :PS Number of specific fragments extracted= 2 number of extra gaps= 2 total=31272 # 1ej0A.120.40 read from T0547.t2k.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 1ej0A 70 :VTQIGGKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=31273 # 1n2zA.120.16 read from T0547.t2k.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)N123 (1n2zA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1n2zA)P44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1n2zA)G46 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 1n2zA 38 :FAA T0547 124 :NE 1n2zA 42 :IT T0547 127 :A 1n2zA 45 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=31276 # 1ct5A.120.77 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 120 :MAYNNE 1ct5A 79 :AKLLPD T0547 128 :P 1ct5A 87 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=31278 # 1f1eA.120.13 read from T0547.t2k.many.frag # found chain 1f1eA in training set Warning: unaligning (T0547)G126 (1f1eA)E20 because G (3-10) conformation "forbidden" or filtered. T0547 120 :MAYNNE 1f1eA 14 :FRQGIG T0547 127 :AP 1f1eA 21 :RR Number of specific fragments extracted= 2 number of extra gaps= 1 total=31280 # 1zc6A.120.116 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)N124 (1zc6A)G121 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zc6A)I125 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYN 1zc6A 117 :GAHG T0547 125 :EGA 1zc6A 122 :QPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=31282 # 1e9rA.120.94 read from T0547.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)G126 (1e9rA)K171 because G (3-10) conformation "forbidden" or filtered. T0547 120 :MAYNNE 1e9rA 165 :SKFGRD T0547 127 :AP 1e9rA 172 :DI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31284 # 2absA.120.98 read from T0547.t2k.many.frag # found chain 2absA in training set Warning: unaligning (T0547)N124 (2absA)R83 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (2absA)K84 because P (beta_P) conformation "forbidden" or filtered. T0547 120 :MAYN 2absA 79 :QKLL T0547 126 :GAP 2absA 85 :PGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=31286 # 1v72A.120.75 read from T0547.t2k.many.frag # found chain 1v72A in template set Warning: unaligning (T0547)Y122 (1v72A)A78 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1v72A)T80 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MA 1v72A 76 :LS T0547 123 :N 1v72A 79 :M T0547 125 :EGAP 1v72A 81 :PPWG Number of specific fragments extracted= 3 number of extra gaps= 2 total=31289 # 1jr2A.120.128 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)N124 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 Warning: unaligning (T0547)E125 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)D113 Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)T114 Warning: unaligning (T0547)A127 (1jr2A)E115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1jr2A)G116 because S (epsilon) conformation "forbidden" or filtered. T0547 120 :MAYN 1jr2A 108 :SKIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=31290 # 1pe9A.120.47 read from T0547.t2k.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)N123 (1pe9A)G51 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1pe9A)I56 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 1pe9A 48 :LSA T0547 124 :NEGA 1pe9A 52 :AEAK Number of specific fragments extracted= 2 number of extra gaps= 2 total=31292 # 1gxyA.120.112 read from T0547.t2k.many.frag # found chain 1gxyA in training set Warning: unaligning (T0547)E125 (1gxyA)N118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1gxyA)C121 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNN 1gxyA 113 :LQLLS T0547 126 :GA 1gxyA 119 :GD Number of specific fragments extracted= 2 number of extra gaps= 2 total=31294 # 1ru4A.120.41 read from T0547.t2k.many.frag # found chain 1ru4A in training set Warning: unaligning (T0547)E125 (1ru4A)P72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ru4A)L75 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNN 1ru4A 67 :MAAVN T0547 126 :GA 1ru4A 73 :GE Number of specific fragments extracted= 2 number of extra gaps= 2 total=31296 # 1z7xW.120.165 read from T0547.t2k.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)G126 (1z7xW)F171 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1z7xW)E173 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNE 1z7xW 165 :LRAKPD T0547 127 :A 1z7xW 172 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=31298 # 1rcqA.120.66 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)Y122 (1rcqA)A69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (1rcqA)G70 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1rcqA)Q73 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1rcqA)I75 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MA 1rcqA 67 :RE T0547 124 :NE 1rcqA 71 :IR T0547 127 :A 1rcqA 74 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=31301 # 1x7dA.120.121 read from T0547.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0547)N123 (1x7dA)A125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1x7dA)N128 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1x7dA)A129 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1x7dA)R130 because G (3-10) conformation "forbidden" or filtered. T0547 120 :MAY 1x7dA 122 :QAL T0547 124 :NE 1x7dA 126 :RP Number of specific fragments extracted= 2 number of extra gaps= 2 total=31303 # 1c7nA.120.106 read from T0547.t2k.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)N123 (1c7nA)T110 because Y (epsilon') conformation "forbidden" or filtered. T0547 120 :MAY 1c7nA 107 :REF T0547 124 :NEGAP 1c7nA 111 :KPGDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31305 # 1vjoA.120.102 read from T0547.t2k.many.frag # found chain 1vjoA in training set Warning: unaligning (T0547)N123 (1vjoA)V94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1vjoA)P96 because P (beta_P) conformation "forbidden" or filtered. T0547 120 :MAY 1vjoA 91 :ANA T0547 124 :N 1vjoA 95 :E T0547 126 :GAP 1vjoA 97 :GDV Number of specific fragments extracted= 3 number of extra gaps= 2 total=31308 # 1lnsA.120.479 read from T0547.t2k.many.frag # found chain 1lnsA in template set Warning: unaligning (T0547)N124 (1lnsA)P484 because P (beta_P) conformation "forbidden" or filtered. T0547 120 :MAYN 1lnsA 480 :WKAL T0547 125 :EGAP 1lnsA 485 :EGHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31310 # 1wzuA.120.43 read from T0547.t2k.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)N124 (1wzuA)V48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1wzuA)A50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYN 1wzuA 44 :RATR T0547 125 :E 1wzuA 49 :D T0547 127 :A 1wzuA 51 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=31313 # 1ccwB.120.240 read from T0547.t2k.many.frag # found chain 1ccwB in training set Warning: unaligning (T0547)G126 (1ccwB)N247 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ccwB)T249 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNE 1ccwB 241 :AEQGVK T0547 127 :A 1ccwB 248 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=31315 # 1rttA.120.29 read from T0547.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)N124 (1rttA)P34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1rttA)S38 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYN 1rttA 30 :IGLV T0547 125 :EGA 1rttA 35 :PGM Number of specific fragments extracted= 2 number of extra gaps= 2 total=31317 # 1m2oA.120.147 read from T0547.t2k.many.frag # found chain 1m2oA in template set T0547 120 :MAYNNEGAP 1m2oA 148 :LSLLPPNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31318 # 1zjcA.120.50 read from T0547.t2k.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)N123 (1zjcA)G51 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1zjcA)V55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zjcA)R56 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 1zjcA 48 :YHC T0547 124 :NEG 1zjcA 52 :ASD Number of specific fragments extracted= 2 number of extra gaps= 2 total=31320 # 1ug6A.120.148 read from T0547.t2k.many.frag # found chain 1ug6A in training set T0547 120 :MAYNNEGAP 1ug6A 149 :ARALADRVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31321 # 1pswA.120.97 read from T0547.t2k.many.frag # found chain 1pswA in template set Warning: unaligning (T0547)N123 (1pswA)G101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1pswA)T106 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 1pswA 98 :LFA T0547 124 :NEGA 1pswA 102 :IPHR Number of specific fragments extracted= 2 number of extra gaps= 2 total=31323 # 1w23A.120.84 read from T0547.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)P128 (1w23A)I93 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 1w23A 85 :MNLLTKGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=31324 # 1zaiA.120.19 read from T0547.t2k.many.frag # found chain 1zaiA in training set Warning: unaligning (T0547)E125 (1zaiA)P25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zaiA)G28 because Y (epsilon') conformation "forbidden" or filtered. T0547 120 :MAYNN 1zaiA 20 :HRIVA T0547 126 :GA 1zaiA 26 :GK Number of specific fragments extracted= 2 number of extra gaps= 2 total=31326 # 1uwcA.120.145 read from T0547.t2k.many.frag # found chain 1uwcA in training set Warning: unaligning (T0547)P128 (1uwcA)R154 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 1uwcA 146 :LSATYDNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=31327 # 7odcA.121.99 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E125 (7odcA)P104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 121 :AYNN 7odcA 100 :GLGV T0547 126 :GA 7odcA 105 :AE T0547 129 :I 7odcA 108 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=31330 # 1oxxK.121.153 read from T0547.t2k.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)E125 (1oxxK)D158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1oxxK)P159 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1oxxK)L161 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNN 1oxxK 154 :ALVK T0547 127 :A 1oxxK 160 :S T0547 129 :I 1oxxK 162 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=31333 # 1ej0A.121.41 read from T0547.t2k.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)N124 (1ej0A)G74 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1ej0A)K76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 121 :AYN 1ej0A 71 :TQI T0547 125 :E 1ej0A 75 :G T0547 127 :A 1ej0A 77 :G T0547 129 :I 1ej0A 79 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=31337 # 1zc6A.121.117 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)P128 (1zc6A)I125 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1zc6A 118 :AHGGQPG T0547 129 :I 1zc6A 126 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=31339 # 1ct5A.121.78 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 121 :AYNNE 1ct5A 80 :KLLPD T0547 128 :PI 1ct5A 87 :KW Number of specific fragments extracted= 2 number of extra gaps= 1 total=31341 # 1f1eA.121.14 read from T0547.t2k.many.frag # found chain 1f1eA in training set Warning: unaligning (T0547)E125 (1f1eA)G19 because S (epsilon) conformation "forbidden" or filtered. T0547 121 :AYNN 1f1eA 15 :RQGI T0547 126 :GAPI 1f1eA 20 :ERRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31343 # 1e9rA.121.95 read from T0547.t2k.many.frag # found chain 1e9rA in template set T0547 121 :AYNNEGAPI 1e9rA 166 :KFGRDKDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=31344 # 1c7nA.121.107 read from T0547.t2k.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)Y122 (1c7nA)F109 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (1c7nA)T110 because Y (epsilon') conformation "forbidden" or filtered. T0547 121 :A 1c7nA 108 :E T0547 124 :NEGAPI 1c7nA 111 :KPGDGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31346 # 1n2zA.121.17 read from T0547.t2k.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)N123 (1n2zA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1n2zA)P44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1n2zA)G46 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1n2zA 39 :AA T0547 124 :NE 1n2zA 42 :IT T0547 127 :A 1n2zA 45 :V T0547 129 :I 1n2zA 47 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=31350 # 1pe9A.121.48 read from T0547.t2k.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)N123 (1pe9A)G51 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1pe9A)E53 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1pe9A)A54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1pe9A)I56 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1pe9A 49 :SA T0547 124 :N 1pe9A 52 :A T0547 127 :A 1pe9A 55 :K T0547 129 :I 1pe9A 57 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=31354 # 1wzuA.121.44 read from T0547.t2k.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)N123 (1wzuA)R47 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1wzuA)A50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1wzuA 45 :AT T0547 124 :NE 1wzuA 48 :VD T0547 127 :A 1wzuA 51 :D T0547 129 :I 1wzuA 53 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=31358 # 1vjoA.121.103 read from T0547.t2k.many.frag # found chain 1vjoA in training set T0547 121 :AYNNEGAPI 1vjoA 92 :NAVEPGDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31359 # 2absA.121.99 read from T0547.t2k.many.frag # found chain 2absA in training set Warning: unaligning (T0547)E125 (2absA)K84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (2absA)G86 because T (delta_L) conformation "forbidden" or filtered. T0547 121 :AYNN 2absA 80 :KLLR T0547 126 :G 2absA 85 :P T0547 128 :PI 2absA 87 :SA Number of specific fragments extracted= 3 number of extra gaps= 2 total=31362 # 1cs1A.121.85 read from T0547.t2k.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)Y122 (1cs1A)F87 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :A 1cs1A 86 :V T0547 123 :NNEGA 1cs1A 88 :LKPGD T0547 129 :I 1cs1A 94 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=31365 # 1rcqA.121.67 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G126 (1rcqA)Q73 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1rcqA)I75 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNE 1rcqA 68 :EAGIR T0547 127 :A 1rcqA 74 :P T0547 129 :I 1rcqA 76 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=31368 # 1uwcA.121.146 read from T0547.t2k.many.frag # found chain 1uwcA in training set Warning: unaligning (T0547)P128 (1uwcA)R154 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1uwcA 147 :SATYDNV T0547 129 :I 1uwcA 155 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=31370 1yjsA expands to /projects/compbio/data/pdb/1yjs.pdb.gz 1yjsA:# 1yjsA.121.103 read from T0547.t2k.many.frag # adding 1yjsA to template set # found chain 1yjsA in template set T0547 121 :AYNNEGAPI 1yjsA 104 :TVLEHGDTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31371 # 1rttA.121.30 read from T0547.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)N124 (1rttA)P34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1rttA)S38 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYN 1rttA 31 :GLV T0547 125 :EGA 1rttA 35 :PGM T0547 129 :I 1rttA 39 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=31374 # 1z7xW.121.166 read from T0547.t2k.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)P128 (1z7xW)E173 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1z7xW 166 :RAKPDFK T0547 129 :I 1z7xW 174 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=31376 # 1zjcA.121.51 read from T0547.t2k.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)P128 (1zjcA)R56 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1zjcA 49 :HCGASDV T0547 129 :I 1zjcA 57 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=31378 # 2d13A.121.25 read from T0547.t2k.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)G126 (2d13A)V31 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2d13A)Y33 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNE 2d13A 26 :KSGLR T0547 127 :A 2d13A 32 :R T0547 129 :I 2d13A 34 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=31381 # 1tf5A.121.475 read from T0547.t2k.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)N124 (1tf5A)Q476 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1tf5A)V480 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYN 1tf5A 473 :EAG T0547 125 :EGA 1tf5A 477 :KGA T0547 129 :I 1tf5A 481 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=31384 # 1v72A.121.76 read from T0547.t2k.many.frag # found chain 1v72A in template set Warning: unaligning (T0547)N124 (1v72A)T80 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYN 1v72A 77 :SAM T0547 125 :EGAPI 1v72A 81 :PPWGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=31386 # 2apjA.121.104 read from T0547.t2k.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)P128 (2apjA)V112 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 2apjA 105 :RLETDSA T0547 129 :I 2apjA 113 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=31388 # 1m1nB.121.383 read from T0547.t2k.many.frag # found chain 1m1nB in training set Warning: unaligning (T0547)N123 (1m1nB)G387 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1m1nB)P390 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1m1nB)H392 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1m1nB 385 :EL T0547 124 :NE 1m1nB 388 :CE T0547 127 :A 1m1nB 391 :V T0547 129 :I 1m1nB 393 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=31392 # 1ru4A.121.42 read from T0547.t2k.many.frag # found chain 1ru4A in training set Warning: unaligning (T0547)E125 (1ru4A)P72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1ru4A)E74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ru4A)L75 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNN 1ru4A 68 :AAVN T0547 126 :G 1ru4A 73 :G T0547 129 :I 1ru4A 76 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=31395 # 1m2oA.121.148 read from T0547.t2k.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)G126 (1m2oA)N154 because G (3-10) conformation "forbidden" or filtered. T0547 121 :AYNNE 1m2oA 149 :SLLPP T0547 127 :API 1m2oA 155 :ALI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31397 # 1uarA.121.101 read from T0547.t2k.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)G126 (1uarA)D107 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1uarA)V108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1uarA)R109 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNE 1uarA 102 :YNGHK T0547 129 :I 1uarA 110 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=31399 # 1gxyA.121.113 read from T0547.t2k.many.frag # found chain 1gxyA in training set Warning: unaligning (T0547)N123 (1gxyA)L116 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1gxyA)N118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1gxyA)C121 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1gxyA 114 :QL T0547 124 :N 1gxyA 117 :S T0547 126 :GA 1gxyA 119 :GD T0547 129 :I 1gxyA 122 :H Number of specific fragments extracted= 4 number of extra gaps= 3 total=31403 # 1ccwB.121.241 read from T0547.t2k.many.frag # found chain 1ccwB in training set Warning: unaligning (T0547)P128 (1ccwB)T249 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1ccwB 242 :EQGVKNI T0547 129 :I 1ccwB 250 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=31405 # 7odcA.122.100 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y122 (7odcA)L101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (7odcA)G102 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 124 :NEGA 7odcA 103 :VPAE T0547 129 :IT 7odcA 108 :VI Number of specific fragments extracted= 2 number of extra gaps= 2 total=31407 # 1ct5A.122.79 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 122 :YNNE 1ct5A 81 :LLPD T0547 128 :PIT 1ct5A 87 :KWH Number of specific fragments extracted= 2 number of extra gaps= 1 total=31409 # 1ej0A.122.42 read from T0547.t2k.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)G126 (1ej0A)K76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 122 :YNNE 1ej0A 72 :QIGG T0547 127 :A 1ej0A 77 :G T0547 129 :IT 1ej0A 79 :II Number of specific fragments extracted= 3 number of extra gaps= 2 total=31412 # 1zc6A.122.118 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)G126 (1zc6A)P123 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zc6A)I125 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNE 1zc6A 119 :HGGQ T0547 127 :A 1zc6A 124 :G T0547 129 :IT 1zc6A 126 :IV Number of specific fragments extracted= 3 number of extra gaps= 2 total=31415 # 1oxxK.122.154 read from T0547.t2k.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)E125 (1oxxK)D158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1oxxK)P159 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1oxxK)L161 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNN 1oxxK 155 :LVK T0547 127 :A 1oxxK 160 :S T0547 129 :IT 1oxxK 162 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=31418 # 1uwcA.122.147 read from T0547.t2k.many.frag # found chain 1uwcA in training set Warning: unaligning (T0547)E125 (1uwcA)D151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1uwcA)R154 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNN 1uwcA 148 :ATY T0547 126 :GA 1uwcA 152 :NV T0547 129 :IT 1uwcA 155 :LY Number of specific fragments extracted= 3 number of extra gaps= 2 total=31421 # 1wzuA.122.45 read from T0547.t2k.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)E125 (1wzuA)D49 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNN 1wzuA 46 :TRV T0547 126 :GA 1wzuA 50 :AD T0547 129 :IT 1wzuA 53 :IV Number of specific fragments extracted= 3 number of extra gaps= 2 total=31424 # 1c7nA.122.108 read from T0547.t2k.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)N123 (1c7nA)T110 because Y (epsilon') conformation "forbidden" or filtered. T0547 122 :Y 1c7nA 109 :F T0547 124 :NEGAPIT 1c7nA 111 :KPGDGVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31426 # 1cs1A.122.86 read from T0547.t2k.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)N124 (1cs1A)K89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YN 1cs1A 87 :FL T0547 125 :EGA 1cs1A 90 :PGD T0547 129 :IT 1cs1A 94 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=31429 # 1pe9A.122.49 read from T0547.t2k.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)N123 (1pe9A)G51 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1pe9A)I56 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 1pe9A 50 :A T0547 124 :NEGA 1pe9A 52 :AEAK T0547 129 :IT 1pe9A 57 :IQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=31432 # 1z7xW.122.167 read from T0547.t2k.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)G126 (1z7xW)F171 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1z7xW)E173 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNE 1z7xW 167 :AKPD T0547 127 :A 1z7xW 172 :K T0547 129 :IT 1z7xW 174 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=31435 # 1zjcA.122.52 read from T0547.t2k.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)N123 (1zjcA)G51 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zjcA)R56 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 1zjcA 50 :C T0547 124 :NEGA 1zjcA 52 :ASDV T0547 129 :IT 1zjcA 57 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=31438 # 1f1eA.122.15 read from T0547.t2k.many.frag # found chain 1f1eA in training set Warning: unaligning (T0547)E125 (1f1eA)G19 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1f1eA)E20 because G (3-10) conformation "forbidden" or filtered. T0547 122 :YNN 1f1eA 16 :QGI T0547 127 :APIT 1f1eA 21 :RRLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=31440 # 1q0rA.122.90 read from T0547.t2k.many.frag # found chain 1q0rA in training set T0547 122 :YNNEGAPIT 1q0rA 91 :WGVDRAHVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31441 # 1e9rA.122.96 read from T0547.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)N123 (1e9rA)G168 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1e9rA)R169 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1e9rA)K171 because G (3-10) conformation "forbidden" or filtered. T0547 122 :Y 1e9rA 167 :F T0547 125 :E 1e9rA 170 :D T0547 127 :APIT 1e9rA 172 :DIIL Number of specific fragments extracted= 3 number of extra gaps= 2 total=31444 # 1yjsA.122.104 read from T0547.t2k.many.frag # found chain 1yjsA in template set T0547 122 :YNNEGAPIT 1yjsA 105 :VLEHGDTVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31445 # 1rttA.122.31 read from T0547.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)P128 (1rttA)S38 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNEGA 1rttA 32 :LVPPGM T0547 129 :IT 1rttA 39 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31447 # 1m1nB.122.384 read from T0547.t2k.many.frag # found chain 1m1nB in training set Warning: unaligning (T0547)E125 (1m1nB)E389 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1m1nB)H392 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNN 1m1nB 386 :LGC T0547 126 :GA 1m1nB 390 :PV T0547 129 :IT 1m1nB 393 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=31450 # 1rcqA.122.68 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G126 (1rcqA)Q73 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1rcqA)P74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1rcqA)I75 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNE 1rcqA 69 :AGIR T0547 129 :IT 1rcqA 76 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31452 # 1tf5A.122.476 read from T0547.t2k.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)A127 (1tf5A)A479 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1tf5A)V480 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNEG 1tf5A 474 :AGQKG T0547 129 :IT 1tf5A 481 :TI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31454 # 1r9jA.122.174 read from T0547.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)N123 (1r9jA)A174 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1r9jA)L178 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1r9jA)I179 because D (zeta) conformation "forbidden" or filtered. T0547 122 :Y 1r9jA 173 :L T0547 124 :NEG 1r9jA 175 :LEK T0547 129 :IT 1r9jA 180 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=31457 # 2d13A.122.26 read from T0547.t2k.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)N123 (2d13A)G28 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2d13A)Y33 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 2d13A 27 :S T0547 124 :NEGA 2d13A 29 :LRVR T0547 129 :IT 2d13A 34 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=31460 # 2apjA.122.105 read from T0547.t2k.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)N123 (2apjA)E107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2apjA)V112 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 2apjA 106 :L T0547 124 :NEGA 2apjA 108 :TDSA T0547 129 :IT 2apjA 113 :IG Number of specific fragments extracted= 3 number of extra gaps= 2 total=31463 # 2absA.122.100 read from T0547.t2k.many.frag # found chain 2absA in training set Warning: unaligning (T0547)N124 (2absA)R83 because T (delta_L) conformation "forbidden" or filtered. T0547 122 :YN 2absA 81 :LL T0547 125 :EGAPIT 2absA 84 :KPGSAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31465 # 1uarA.122.102 read from T0547.t2k.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)N124 (1uarA)H105 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1uarA)D107 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1uarA)R109 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YN 1uarA 103 :NG T0547 125 :E 1uarA 106 :K T0547 127 :A 1uarA 108 :V T0547 129 :IT 1uarA 110 :LM Number of specific fragments extracted= 4 number of extra gaps= 3 total=31469 # 1v72A.122.78 read from T0547.t2k.many.frag # found chain 1v72A in template set Warning: unaligning (T0547)G126 (1v72A)W83 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1v72A)N85 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNE 1v72A 79 :MTPP T0547 127 :A 1v72A 84 :G T0547 129 :IT 1v72A 86 :IY Number of specific fragments extracted= 3 number of extra gaps= 2 total=31472 # 2b9eA.122.96 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)Y122 (2b9eA)D223 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2b9eA)H229 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 2b9eA 224 :PPPGS T0547 129 :IT 2b9eA 230 :VI Number of specific fragments extracted= 2 number of extra gaps= 2 total=31474 # 1v72A.122.77 read from T0547.t2k.many.frag # found chain 1v72A in template set Warning: unaligning (T0547)E125 (1v72A)P81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1v72A)W83 because G (3-10) conformation "forbidden" or filtered. T0547 122 :YNN 1v72A 78 :AMT T0547 126 :G 1v72A 82 :P T0547 128 :PIT 1v72A 84 :GNI Number of specific fragments extracted= 3 number of extra gaps= 2 total=31477 # 1ru4A.122.43 read from T0547.t2k.many.frag # found chain 1ru4A in training set Warning: unaligning (T0547)N123 (1ru4A)V70 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ru4A)L75 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 1ru4A 69 :A T0547 124 :NEGA 1ru4A 71 :NPGE T0547 129 :IT 1ru4A 76 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=31480 # 1n2zA.122.18 read from T0547.t2k.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)N123 (1n2zA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1n2zA)P44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1n2zA)G46 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 1n2zA 40 :A T0547 124 :NE 1n2zA 42 :IT T0547 127 :A 1n2zA 45 :V T0547 129 :IT 1n2zA 47 :VS Number of specific fragments extracted= 4 number of extra gaps= 3 total=31484 # 1ej0A.123.43 read from T0547.t2k.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 123 :NNEGA 1ej0A 73 :IGGKG T0547 129 :ITV 1ej0A 79 :IIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31486 # 1cs1A.123.87 read from T0547.t2k.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 1cs1A 88 :LKPGD T0547 129 :ITV 1cs1A 94 :LVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31488 # 7odcA.123.101 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 123 :NNEGA 7odcA 102 :GVPAE T0547 129 :ITV 7odcA 108 :VIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=31490 # 1oxxK.123.155 read from T0547.t2k.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)E125 (1oxxK)D158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1oxxK)L161 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NN 1oxxK 156 :VK T0547 126 :GA 1oxxK 159 :PS T0547 129 :ITV 1oxxK 162 :LLL Number of specific fragments extracted= 3 number of extra gaps= 2 total=31493 # 1nytA.123.115 read from T0547.t2k.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)N124 (1nytA)R117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1nytA)L120 because P (beta_P) conformation "forbidden" or filtered. T0547 123 :N 1nytA 116 :I T0547 125 :EG 1nytA 118 :PG T0547 128 :PITV 1nytA 121 :RILL Number of specific fragments extracted= 3 number of extra gaps= 2 total=31496 # 1wzuA.123.46 read from T0547.t2k.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)N123 (1wzuA)R47 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1wzuA)D49 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1wzuA)A50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :N 1wzuA 48 :V T0547 127 :A 1wzuA 51 :D T0547 129 :ITV 1wzuA 53 :IVF Number of specific fragments extracted= 3 number of extra gaps= 3 total=31499 # 1y1pA.123.7 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 123 :NNEGAPITV 1y1pA 9 :LPEGSLVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31500 # 1ct5A.123.80 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)N123 (1ct5A)L82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 124 :NE 1ct5A 83 :PD T0547 128 :PITV 1ct5A 87 :KWHF Number of specific fragments extracted= 2 number of extra gaps= 2 total=31502 # 1qsgA.123.5 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. T0547 123 :NNEGA 1qsgA 3 :FLSGK T0547 129 :ITV 1qsgA 9 :ILV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31504 1sr9A expands to /projects/compbio/data/pdb/1sr9.pdb.gz 1sr9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1sr9A.123.133 read from T0547.t2k.many.frag # adding 1sr9A to template set # found chain 1sr9A in template set Warning: unaligning (T0547)A127 (1sr9A)V138 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1sr9A)T139 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEG 1sr9A 134 :IPDD T0547 129 :ITV 1sr9A 140 :IQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31506 # 1c7nA.123.109 read from T0547.t2k.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)N123 (1c7nA)T110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1c7nA)K111 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGAPITV 1c7nA 112 :PGDGVII Number of specific fragments extracted= 1 number of extra gaps= 1 total=31507 # 1z7xW.123.168 read from T0547.t2k.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)P128 (1z7xW)E173 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V131 (1z7xW)V176 because G (3-10) conformation "forbidden" or filtered. T0547 123 :NNEGA 1z7xW 168 :KPDFK T0547 129 :IT 1z7xW 174 :LT Number of specific fragments extracted= 2 number of extra gaps= 2 total=31509 # 1yjsA.123.105 read from T0547.t2k.many.frag # found chain 1yjsA in template set Warning: unaligning (T0547)E125 (1yjsA)H108 because P (beta_P) conformation "forbidden" or filtered. T0547 123 :NN 1yjsA 106 :LE T0547 126 :GAPITV 1yjsA 109 :GDTVLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31511 # 2b9eA.123.97 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)P128 (2b9eA)H229 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 2b9eA 224 :PPPGS T0547 129 :ITV 2b9eA 230 :VID Number of specific fragments extracted= 2 number of extra gaps= 1 total=31513 # 1tf5A.123.477 read from T0547.t2k.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)A127 (1tf5A)A479 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1tf5A)V480 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEG 1tf5A 475 :GQKG T0547 129 :ITV 1tf5A 481 :TIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31515 1vk9A expands to /projects/compbio/data/pdb/1vk9.pdb.gz 1vk9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vk9A.123.59 read from T0547.t2k.many.frag # adding 1vk9A to template set # found chain 1vk9A in template set Warning: unaligning (T0547)N123 (1vk9A)N48 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vk9A)L53 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 1vk9A 49 :LEGS T0547 129 :ITV 1vk9A 54 :VID Number of specific fragments extracted= 2 number of extra gaps= 2 total=31517 # 2apjA.123.106 read from T0547.t2k.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)N123 (2apjA)E107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2apjA)V112 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 2apjA 108 :TDSA T0547 129 :ITV 2apjA 113 :IGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=31519 # 1ne2A.123.48 read from T0547.t2k.many.frag # found chain 1ne2A in training set T0547 123 :NNEGAPITV 1ne2A 46 :NIGGRSVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=31520 # 1m1nB.123.385 read from T0547.t2k.many.frag # found chain 1m1nB in training set Warning: unaligning (T0547)N123 (1m1nB)G387 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1m1nB)P390 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1m1nB)H392 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NE 1m1nB 388 :CE T0547 127 :A 1m1nB 391 :V T0547 129 :ITV 1m1nB 393 :ILC Number of specific fragments extracted= 3 number of extra gaps= 3 total=31523 # 1zc6A.123.119 read from T0547.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)N123 (1zc6A)G120 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1zc6A)G121 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1zc6A)P123 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zc6A)I125 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :E 1zc6A 122 :Q T0547 127 :A 1zc6A 124 :G T0547 129 :ITV 1zc6A 126 :IVA Number of specific fragments extracted= 3 number of extra gaps= 3 total=31526 # 1nw3A.123.152 read from T0547.t2k.many.frag # found chain 1nw3A in template set Warning: unaligning (T0547)N124 (1nw3A)T154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1nw3A)L158 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :N 1nw3A 153 :M T0547 125 :EGA 1nw3A 155 :DDD T0547 129 :ITV 1nw3A 159 :FVD Number of specific fragments extracted= 3 number of extra gaps= 2 total=31529 # 1uwcA.123.148 read from T0547.t2k.many.frag # found chain 1uwcA in training set Warning: unaligning (T0547)E125 (1uwcA)D151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1uwcA)R154 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NN 1uwcA 149 :TY T0547 126 :GA 1uwcA 152 :NV T0547 129 :ITV 1uwcA 155 :LYT Number of specific fragments extracted= 3 number of extra gaps= 2 total=31532 # 1ooyA.123.13 read from T0547.t2k.many.frag # found chain 1ooyA in training set T0547 123 :NNEGAPITV 1ooyA 14 :IPNGATVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31533 # 1n8kA.123.188 read from T0547.t2k.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)P128 (1n8kA)T194 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 1n8kA 189 :VTQGS T0547 129 :ITV 1n8kA 195 :CAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31535 1y5mA expands to /projects/compbio/data/pdb/1y5m.pdb.gz 1y5mA:# 1y5mA.123.14 read from T0547.t2k.many.frag # adding 1y5mA to template set # found chain 1y5mA in template set Warning: unaligning (T0547)A127 (1y5mA)K35 because P (beta_P) conformation "forbidden" or filtered. T0547 123 :NNEG 1y5mA 31 :MLQG T0547 128 :PITV 1y5mA 36 :KVIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31537 # 2az4A.123.249 read from T0547.t2k.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. T0547 123 :NNEG 2az4A 250 :ENPN T0547 128 :PITV 2az4A 255 :QITF Number of specific fragments extracted= 2 number of extra gaps= 1 total=31539 # 1rcqA.123.69 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G126 (1rcqA)Q73 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1rcqA)I75 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNE 1rcqA 70 :GIR T0547 127 :A 1rcqA 74 :P T0547 129 :ITV 1rcqA 76 :LLL Number of specific fragments extracted= 3 number of extra gaps= 2 total=31542 # 1zk4A.123.2 read from T0547.t2k.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)P128 (1zk4A)V8 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 1zk4A 3 :RLDGK T0547 129 :ITV 1zk4A 9 :AII Number of specific fragments extracted= 2 number of extra gaps= 1 total=31544 # 1p4cA.123.120 read from T0547.t2k.many.frag # found chain 1p4cA in training set Warning: unaligning (T0547)P128 (1p4cA)L126 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 1p4cA 121 :QCDGD T0547 129 :ITV 1p4cA 127 :WFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=31546 1id1A expands to /projects/compbio/data/pdb/1id1.pdb.gz 1id1A:# 1id1A.123.0 read from T0547.t2k.many.frag # adding 1id1A to template set # found chain 1id1A in template set Warning: unaligning (T0547)N123 because first residue in template chain is (1id1A)H3 Warning: unaligning (T0547)P128 (1id1A)F8 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 1id1A 4 :RKDH T0547 129 :ITV 1id1A 9 :IVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=31548 # 1wzuA.124.47 read from T0547.t2k.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)N124 (1wzuA)V48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 1wzuA 49 :DAD T0547 129 :ITVN 1wzuA 53 :IVFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=31550 # 1y1pA.124.8 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 124 :NEGAPITVN 1y1pA 10 :PEGSLVLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31551 # 1qsgA.124.6 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. T0547 124 :NEGA 1qsgA 4 :LSGK T0547 129 :ITVN 1qsgA 9 :ILVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=31553 # 1ne2A.124.49 read from T0547.t2k.many.frag # found chain 1ne2A in training set Warning: unaligning (T0547)A127 (1ne2A)R50 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEG 1ne2A 47 :IGG T0547 128 :PITVN 1ne2A 51 :SVIDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31555 # 1oxxK.124.156 read from T0547.t2k.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)E125 (1oxxK)D158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1oxxK)L161 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :N 1oxxK 157 :K T0547 126 :GA 1oxxK 159 :PS T0547 129 :ITVN 1oxxK 162 :LLLD Number of specific fragments extracted= 3 number of extra gaps= 2 total=31558 # 7odcA.124.102 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N124 (7odcA)V103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 125 :EGA 7odcA 104 :PAE T0547 129 :ITVN 7odcA 108 :VIYA Number of specific fragments extracted= 2 number of extra gaps= 2 total=31560 # 1ooyA.124.14 read from T0547.t2k.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)E125 (1ooyA)N16 because P (beta_P) conformation "forbidden" or filtered. T0547 124 :N 1ooyA 15 :P T0547 126 :GAPITVN 1ooyA 17 :GATVLVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31562 # 1ej0A.124.44 read from T0547.t2k.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)N124 (1ej0A)G74 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 125 :EGA 1ej0A 75 :GKG T0547 129 :ITVN 1ej0A 79 :IIAC Number of specific fragments extracted= 2 number of extra gaps= 2 total=31564 # 1y5mA.124.15 read from T0547.t2k.many.frag # found chain 1y5mA in template set T0547 124 :NEGAPITVN 1y5mA 32 :LQGKKVIVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31565 # 1p4cA.124.121 read from T0547.t2k.many.frag # found chain 1p4cA in training set Warning: unaligning (T0547)P128 (1p4cA)L126 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 1p4cA 122 :CDGD T0547 129 :ITVN 1p4cA 127 :WFQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31567 # 1nytA.124.116 read from T0547.t2k.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)N124 (1nytA)R117 because Y (epsilon') conformation "forbidden" or filtered. T0547 125 :EGAPITVN 1nytA 118 :PGLRILLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=31568 # 1cs1A.124.88 read from T0547.t2k.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 1cs1A 89 :KPGD T0547 129 :ITVN 1cs1A 94 :LVAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=31570 # 1z7xW.124.169 read from T0547.t2k.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)G126 (1z7xW)F171 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1z7xW)E173 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NE 1z7xW 169 :PD T0547 127 :A 1z7xW 172 :K T0547 129 :ITVN 1z7xW 174 :LTVS Number of specific fragments extracted= 3 number of extra gaps= 2 total=31573 # 1id1A.124.1 read from T0547.t2k.many.frag # found chain 1id1A in template set Warning: unaligning (T0547)N124 (1id1A)R4 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1id1A)F8 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 1id1A 5 :KDH T0547 129 :ITVN 1id1A 9 :IVCG Number of specific fragments extracted= 2 number of extra gaps= 2 total=31575 # 2az4A.124.250 read from T0547.t2k.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)G126 (2az4A)N253 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. T0547 124 :NE 2az4A 251 :NP T0547 128 :PITVN 2az4A 255 :QITFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=31577 # 1sr9A.124.134 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)N124 (1sr9A)P135 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1sr9A)D137 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1sr9A)T139 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :E 1sr9A 136 :D T0547 127 :A 1sr9A 138 :V T0547 129 :ITVN 1sr9A 140 :IQVL Number of specific fragments extracted= 3 number of extra gaps= 3 total=31580 1rkxA expands to /projects/compbio/data/pdb/1rkx.pdb.gz 1rkxA:# 1rkxA.124.6 read from T0547.t2k.many.frag # adding 1rkxA to template set # found chain 1rkxA in template set T0547 124 :NEGAPITVN 1rkxA 7 :WQGKRVFVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31581 1ir6A expands to /projects/compbio/data/pdb/1ir6.pdb.gz 1ir6A:# 1ir6A.124.30 read from T0547.t2k.many.frag # adding 1ir6A to template set # found chain 1ir6A in template set T0547 124 :NEGAPITVN 1ir6A 70 :RQGKRIRVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=31582 # 1t2dA.124.1 read from T0547.t2k.many.frag # found chain 1t2dA in training set Warning: unaligning (T0547)N124 because first residue in template chain is (1t2dA)A1 Warning: unaligning (T0547)E125 (1t2dA)P2 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1t2dA)A4 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1t2dA)K5 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :G 1t2dA 3 :K T0547 129 :ITVN 1t2dA 6 :IVLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31584 # 1m1nB.124.386 read from T0547.t2k.many.frag # found chain 1m1nB in training set Warning: unaligning (T0547)G126 (1m1nB)P390 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1m1nB)H392 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NE 1m1nB 388 :CE T0547 127 :A 1m1nB 391 :V T0547 129 :ITVN 1m1nB 393 :ILCH Number of specific fragments extracted= 3 number of extra gaps= 2 total=31587 1i24A expands to /projects/compbio/data/pdb/1i24.pdb.gz 1i24A:Skipped atom 200, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 269, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 271, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 273, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 275, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 277, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 302, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 304, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 306, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 310, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 376, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 378, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 380, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 382, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 384, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 386, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 388, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 390, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 392, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 394, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 396, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 398, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 400, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 402, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 404, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 406, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 408, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 410, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 412, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 414, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 416, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 487, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 519, because occupancy 0.200 <= existing 0.800 in 1i24A Skipped atom 521, because occupancy 0.200 <= existing 0.800 in 1i24A Skipped atom 563, because occupancy 0.300 <= existing 0.700 in 1i24A Skipped atom 687, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 699, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 701, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 703, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 705, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 707, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 709, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 711, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 727, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 747, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 749, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 916, because occupancy 0.200 <= existing 0.600 in 1i24A Skipped atom 917, because occupancy 0.200 <= existing 0.600 in 1i24A Skipped atom 1313, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 1317, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 1319, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 1321, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 1323, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 1392, because occupancy 0.450 <= existing 0.550 in 1i24A Skipped atom 1394, because occupancy 0.450 <= existing 0.550 in 1i24A Skipped atom 1396, because occupancy 0.450 <= existing 0.550 in 1i24A Skipped atom 1642, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 1644, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 1646, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 1648, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 1907, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 1909, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 1911, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 1913, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 1915, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 1917, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 2153, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2215, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2217, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2219, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2221, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2299, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2301, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2303, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2305, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2307, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2309, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2452, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 2721, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 2802, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2883, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 2968, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2970, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2972, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2974, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2976, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 3143, because occupancy 0.400 <= existing 0.600 in 1i24A # 1i24A.124.8 read from T0547.t2k.many.frag # adding 1i24A to template set # found chain 1i24A in template set Warning: unaligning (T0547)G126 because first residue in template chain is (1i24A)G1 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1i24A)S2 Warning: unaligning (T0547)P128 (1i24A)R3 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVN 1i24A 4 :VMVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31588 1zcjA expands to /projects/compbio/data/pdb/1zcj.pdb.gz 1zcjA:Skipped atom 52, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 54, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 56, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 58, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 60, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 246, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 248, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1033, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1035, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1037, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1039, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1205, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1207, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1209, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1211, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1418, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1420, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1422, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1424, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1426, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1428, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1543, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1545, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1547, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1549, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1551, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1738, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1740, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1742, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 1744, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 2498, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 2500, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 2502, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 2504, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 2506, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 2508, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 2510, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 3309, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 3311, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 3313, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 3315, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 3317, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 3319, because occupancy 0.350 <= existing 0.650 in 1zcjA Skipped atom 3321, because occupancy 0.350 <= existing 0.650 in 1zcjA # 1zcjA.124.34 read from T0547.t2k.many.frag # adding 1zcjA to template set # found chain 1zcjA in template set Warning: unaligning (T0547)P128 (1zcjA)S298 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 1zcjA 294 :QPVS T0547 129 :ITVN 1zcjA 299 :VGVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31590 # 2b9eA.124.98 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)P128 (2b9eA)H229 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 2b9eA 225 :PPGS T0547 129 :ITVN 2b9eA 230 :VIDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31592 # 1nw3A.124.153 read from T0547.t2k.many.frag # found chain 1nw3A in template set Warning: unaligning (T0547)N124 (1nw3A)T154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1nw3A)L158 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1nw3A)L162 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGA 1nw3A 155 :DDD T0547 129 :ITV 1nw3A 159 :FVD Number of specific fragments extracted= 2 number of extra gaps= 3 total=31594 # 1yjsA.124.106 read from T0547.t2k.many.frag # found chain 1yjsA in template set Warning: unaligning (T0547)N124 (1yjsA)E107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1yjsA)M115 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGAPITV 1yjsA 108 :HGDTVLG Number of specific fragments extracted= 1 number of extra gaps= 2 total=31595 # 1n8kA.124.189 read from T0547.t2k.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)P128 (1n8kA)T194 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1n8kA)F198 because P (beta_P) conformation "forbidden" or filtered. T0547 124 :NEGA 1n8kA 190 :TQGS T0547 129 :ITV 1n8kA 195 :CAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=31597 # 2fnuA.124.71 read from T0547.t2k.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)G126 (2fnuA)R74 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2fnuA)E76 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NE 2fnuA 72 :AD T0547 127 :A 2fnuA 75 :N T0547 129 :ITVN 2fnuA 77 :IITT Number of specific fragments extracted= 3 number of extra gaps= 2 total=31600 # 1c7nA.124.110 read from T0547.t2k.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)E125 (1c7nA)P112 because P (beta_P) conformation "forbidden" or filtered. T0547 124 :N 1c7nA 111 :K T0547 126 :GAPITVN 1c7nA 113 :GDGVIII Number of specific fragments extracted= 2 number of extra gaps= 1 total=31602 1ofuX expands to /projects/compbio/data/pdb/1ofu.pdb.gz 1ofuX:# 1ofuX.124.54 read from T0547.t2k.many.frag # adding 1ofuX to template set # found chain 1ofuX in template set Warning: unaligning (T0547)P128 (1ofuX)R101 because G (3-10) conformation "forbidden" or filtered. T0547 124 :NEGA 1ofuX 97 :LNRE T0547 129 :ITVN 1ofuX 102 :ILLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31604 # 1lqtA.124.144 read from T0547.t2k.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)P128 (1lqtA)R149 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 1lqtA 145 :LSGA T0547 129 :ITVN 1lqtA 150 :AVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31606 # 1qsgA.125.7 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. T0547 125 :EGA 1qsgA 5 :SGK T0547 129 :ITVNG 1qsgA 9 :ILVTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31608 # 1y5mA.125.16 read from T0547.t2k.many.frag # found chain 1y5mA in template set T0547 125 :EGAPITVNG 1y5mA 33 :QGKKVIVTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31609 # 1wzuA.125.48 read from T0547.t2k.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)G126 (1wzuA)A50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :E 1wzuA 49 :D T0547 127 :A 1wzuA 51 :D T0547 129 :ITVNG 1wzuA 53 :IVFAG Number of specific fragments extracted= 3 number of extra gaps= 2 total=31612 # 1y1pA.125.9 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 125 :EGAPITVNG 1y1pA 11 :EGSLVLVTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31613 # 7odcA.125.103 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 125 :EGA 7odcA 104 :PAE T0547 129 :ITVNG 7odcA 108 :VIYAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=31615 # 1rkxA.125.7 read from T0547.t2k.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)E125 (1rkxA)Q8 because P (beta_P) conformation "forbidden" or filtered. T0547 126 :GAPITVNG 1rkxA 9 :GKRVFVTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=31616 # 1ir6A.125.31 read from T0547.t2k.many.frag # found chain 1ir6A in template set T0547 125 :EGAPITVNG 1ir6A 71 :QGKRIRVHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31617 # 1m1nB.125.387 read from T0547.t2k.many.frag # found chain 1m1nB in training set Warning: unaligning (T0547)G126 (1m1nB)P390 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1m1nB)H392 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1m1nB)N397 because G (3-10) conformation "forbidden" or filtered. T0547 125 :E 1m1nB 389 :E T0547 127 :A 1m1nB 391 :V T0547 129 :ITVN 1m1nB 393 :ILCH Number of specific fragments extracted= 3 number of extra gaps= 3 total=31620 # 1ooyA.125.15 read from T0547.t2k.many.frag # found chain 1ooyA in training set T0547 125 :EGAPITVNG 1ooyA 16 :NGATVLVGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31621 # 1id1A.125.2 read from T0547.t2k.many.frag # found chain 1id1A in template set Warning: unaligning (T0547)P128 (1id1A)F8 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1id1A)G12 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1id1A)H13 because G (3-10) conformation "forbidden" or filtered. T0547 125 :EGA 1id1A 5 :KDH T0547 129 :ITV 1id1A 9 :IVC Number of specific fragments extracted= 2 number of extra gaps= 2 total=31623 # 1nytA.125.117 read from T0547.t2k.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)E125 (1nytA)P118 because P (beta_P) conformation "forbidden" or filtered. T0547 126 :GAPITVNG 1nytA 119 :GLRILLIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=31624 # 1t2dA.125.2 read from T0547.t2k.many.frag # found chain 1t2dA in training set Warning: unaligning (T0547)E125 (1t2dA)P2 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1t2dA)K3 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1t2dA)K5 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1t2dA 4 :A T0547 129 :ITVNG 1t2dA 6 :IVLVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=31626 # 1ne2A.125.50 read from T0547.t2k.many.frag # found chain 1ne2A in training set T0547 125 :EGAPITVNG 1ne2A 48 :GGRSVIDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31627 # 2az4A.125.251 read from T0547.t2k.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (2az4A)G260 because Y (epsilon') conformation "forbidden" or filtered. T0547 125 :EG 2az4A 252 :PN T0547 128 :PITVN 2az4A 255 :QITFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=31629 # 1ej0A.125.45 read from T0547.t2k.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)G126 (1ej0A)K76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 125 :E 1ej0A 75 :G T0547 127 :A 1ej0A 77 :G T0547 129 :ITVNG 1ej0A 79 :IIACD Number of specific fragments extracted= 3 number of extra gaps= 2 total=31632 1esc expands to /projects/compbio/data/pdb/1esc.pdb.gz 1esc:Warning: there is no chain 1esc will retry with 1escA # 1esc.125.93 read from T0547.t2k.many.frag # adding 1esc to template set # found chain 1esc in template set Warning: unaligning (T0547)P128 (1esc)Q97 because G (3-10) conformation "forbidden" or filtered. T0547 125 :EGA 1esc 94 :QDT T0547 129 :ITVNG 1esc 98 :LTVGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=31634 # 1izcA.125.93 read from T0547.t2k.many.frag # found chain 1izcA in training set Warning: unaligning (T0547)G133 (1izcA)V102 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGAPITVN 1izcA 94 :GRSLVIVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=31635 # 1ofuX.125.55 read from T0547.t2k.many.frag # found chain 1ofuX in template set Warning: unaligning (T0547)P128 (1ofuX)R101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1ofuX)Q106 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGA 1ofuX 98 :NRE T0547 129 :ITVN 1ofuX 102 :ILLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=31637 # 1p4cA.125.122 read from T0547.t2k.many.frag # found chain 1p4cA in training set Warning: unaligning (T0547)P128 (1p4cA)L126 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 1p4cA 123 :DGD T0547 129 :ITVNG 1p4cA 127 :WFQLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=31639 # 1i24A.125.9 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)G126 because first residue in template chain is (1i24A)G1 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1i24A)S2 Warning: unaligning (T0547)P128 (1i24A)R3 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNG 1i24A 4 :VMVIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31640 # 1sr9A.125.135 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)P128 (1sr9A)T139 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 1sr9A 136 :DDV T0547 129 :ITVNG 1sr9A 140 :IQVLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=31642 # 1cs1A.125.89 read from T0547.t2k.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1cs1A)P97 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGA 1cs1A 90 :PGD T0547 129 :ITV 1cs1A 94 :LVA T0547 133 :G 1cs1A 98 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=31645 # 1z7xW.125.170 read from T0547.t2k.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)P128 (1z7xW)E173 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1z7xW)S177 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGA 1z7xW 170 :DFK T0547 129 :ITV 1z7xW 174 :LTV T0547 133 :G 1z7xW 178 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=31648 # 1zcjA.125.35 read from T0547.t2k.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)P128 (1zcjA)S298 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 1zcjA 295 :PVS T0547 129 :ITVNG 1zcjA 299 :VGVLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31650 # 1auoA.125.103 read from T0547.t2k.many.frag # found chain 1auoA in training set Warning: unaligning (T0547)P128 (1auoA)R107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1auoA)A111 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 1auoA 104 :DAS T0547 129 :ITV 1auoA 108 :IFL T0547 133 :G 1auoA 112 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=31653 # 1lqtA.125.145 read from T0547.t2k.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)P128 (1lqtA)R149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1lqtA)I153 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGA 1lqtA 146 :SGA T0547 129 :ITV 1lqtA 150 :AVV T0547 133 :G 1lqtA 154 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=31656 # 1zk4A.125.4 read from T0547.t2k.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)E125 (1zk4A)D5 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zk4A)V8 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1zk4A 6 :GK T0547 129 :ITVNG 1zk4A 9 :AIITG Number of specific fragments extracted= 2 number of extra gaps= 2 total=31658 # 1wbhA.125.65 read from T0547.t2k.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)T130 (1wbhA)G70 because Y (epsilon') conformation "forbidden" or filtered. T0547 125 :EGAPI 1wbhA 65 :PEAIV T0547 131 :VNG 1wbhA 71 :AGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=31660 # 2fnuA.125.72 read from T0547.t2k.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)P128 (2fnuA)E76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (2fnuA)T80 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGA 2fnuA 73 :DRN T0547 129 :ITV 2fnuA 77 :IIT T0547 133 :G 2fnuA 81 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=31663 # 1xgkA.125.3 read from T0547.t2k.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)G126 (1xgkA)K5 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :E 1xgkA 4 :Q T0547 127 :APITVNG 1xgkA 6 :KTIAVVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31665 # 1qsgA.126.8 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. T0547 126 :GA 1qsgA 6 :GK T0547 129 :ITVNGF 1qsgA 9 :ILVTGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31667 # 1y5mA.126.17 read from T0547.t2k.many.frag # found chain 1y5mA in template set T0547 126 :GAPITVNGF 1y5mA 34 :GKKVIVTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31668 # 7odcA.126.104 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 126 :GA 7odcA 105 :AE T0547 129 :ITVNGF 7odcA 108 :VIYANP Number of specific fragments extracted= 2 number of extra gaps= 1 total=31670 # 1wzuA.126.49 read from T0547.t2k.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)G126 (1wzuA)A50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1wzuA 51 :D T0547 129 :ITVNGF 1wzuA 53 :IVFAGV Number of specific fragments extracted= 2 number of extra gaps= 2 total=31672 # 1y1pA.126.10 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 126 :GAPITVNGF 1y1pA 12 :GSLVLVTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31673 # 1rkxA.126.8 read from T0547.t2k.many.frag # found chain 1rkxA in template set T0547 126 :GAPITVNGF 1rkxA 9 :GKRVFVTGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=31674 # 1m1nB.126.388 read from T0547.t2k.many.frag # found chain 1m1nB in training set Warning: unaligning (T0547)G126 (1m1nB)P390 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1m1nB)H392 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1m1nB)N397 because G (3-10) conformation "forbidden" or filtered. T0547 127 :A 1m1nB 391 :V T0547 129 :ITVN 1m1nB 393 :ILCH T0547 134 :F 1m1nB 398 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=31677 # 1ir6A.126.32 read from T0547.t2k.many.frag # found chain 1ir6A in template set T0547 126 :GAPITVNGF 1ir6A 72 :GKRIRVHGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31678 # 1izcA.126.94 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 126 :GAPITVNGF 1izcA 95 :RSLVIVRVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31679 # 1t2dA.126.3 read from T0547.t2k.many.frag # found chain 1t2dA in training set Warning: unaligning (T0547)G126 (1t2dA)K3 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1t2dA)K5 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1t2dA)G10 because S (epsilon) conformation "forbidden" or filtered. T0547 127 :A 1t2dA 4 :A T0547 129 :ITVN 1t2dA 6 :IVLV T0547 134 :F 1t2dA 11 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=31682 # 1id1A.126.3 read from T0547.t2k.many.frag # found chain 1id1A in template set Warning: unaligning (T0547)P128 (1id1A)F8 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1id1A)H13 because G (3-10) conformation "forbidden" or filtered. T0547 126 :GA 1id1A 6 :DH T0547 129 :ITVN 1id1A 9 :IVCG T0547 134 :F 1id1A 14 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=31685 # 1nytA.126.118 read from T0547.t2k.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)N132 (1nytA)I125 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GAPITV 1nytA 119 :GLRILL T0547 133 :GF 1nytA 126 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31687 # 1ej0A.126.46 read from T0547.t2k.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1ej0A)C82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1ej0A)D83 because Y (epsilon') conformation "forbidden" or filtered. T0547 126 :GA 1ej0A 76 :KG T0547 129 :ITV 1ej0A 79 :IIA T0547 134 :F 1ej0A 84 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=31690 # 1ne2A.126.51 read from T0547.t2k.many.frag # found chain 1ne2A in training set T0547 126 :GAPITVNGF 1ne2A 49 :GRSVIDAGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31691 # 1ooyA.126.16 read from T0547.t2k.many.frag # found chain 1ooyA in training set T0547 126 :GAPITVNGF 1ooyA 17 :GATVLVGGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31692 # 2az4A.126.252 read from T0547.t2k.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. T0547 126 :G 2az4A 253 :N T0547 128 :PITVNGF 2az4A 255 :QITFNGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=31694 # 1cs1A.126.90 read from T0547.t2k.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1cs1A 91 :GD T0547 129 :ITVNGF 1cs1A 94 :LVAPHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=31696 # 1i24A.126.10 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)G126 because first residue in template chain is (1i24A)G1 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1i24A)S2 Warning: unaligning (T0547)P128 (1i24A)R3 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1i24A 4 :VMVIGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31697 # 1p4cA.126.123 read from T0547.t2k.many.frag # found chain 1p4cA in training set Warning: unaligning (T0547)G126 (1p4cA)G124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1p4cA)L126 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1p4cA 125 :D T0547 129 :ITVNGF 1p4cA 127 :WFQLYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=31699 # 1yacA.126.104 read from T0547.t2k.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)G126 (1yacA)K105 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1yacA)A111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE in next template residue (1yacA)V114 T0547 127 :APITV 1yacA 106 :KQLII T0547 133 :G 1yacA 112 :G Number of specific fragments extracted= 2 number of extra gaps= 3 total=31701 # 1lqtA.126.146 read from T0547.t2k.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)P128 (1lqtA)R149 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1lqtA 147 :GA T0547 129 :ITVNGF 1lqtA 150 :AVVIGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=31703 # 1wbhA.126.66 read from T0547.t2k.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)G126 (1wbhA)E66 because G (3-10) conformation "forbidden" or filtered. T0547 127 :APITVNGF 1wbhA 67 :AIVGAGTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=31704 # 1zcjA.126.36 read from T0547.t2k.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)P128 (1zcjA)S298 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1zcjA 296 :VS T0547 129 :ITVNGF 1zcjA 299 :VGVLGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31706 # 1u0fA.126.177 read from T0547.t2k.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)N132 (1u0fA)V183 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GAPITV 1u0fA 177 :GPRVWF T0547 133 :GF 1u0fA 184 :SN Number of specific fragments extracted= 2 number of extra gaps= 1 total=31708 # 1zk4A.126.5 read from T0547.t2k.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)A127 (1zk4A)K7 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zk4A)V8 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1zk4A)T12 because P (beta_P) conformation "forbidden" or filtered. T0547 126 :G 1zk4A 6 :G T0547 129 :ITV 1zk4A 9 :AII T0547 133 :GF 1zk4A 13 :GG Number of specific fragments extracted= 3 number of extra gaps= 2 total=31711 # 1esc.126.94 read from T0547.t2k.many.frag # found chain 1esc in template set Warning: unaligning (T0547)G126 (1esc)D95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1esc)Q97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1esc)G101 because Y (epsilon') conformation "forbidden" or filtered. T0547 127 :A 1esc 96 :T T0547 129 :ITV 1esc 98 :LTV T0547 133 :GF 1esc 102 :SL Number of specific fragments extracted= 3 number of extra gaps= 3 total=31714 1sur expands to /projects/compbio/data/pdb/1sur.pdb.gz 1sur:Warning: there is no chain 1sur will retry with 1surA # 1sur.126.44 read from T0547.t2k.many.frag # adding 1sur to template set # found chain 1sur in template set Warning: unaligning (T0547)G133 (1sur)S52 because G (3-10) conformation "forbidden" or filtered. T0547 126 :GAPITVN 1sur 45 :GEYVLSS T0547 134 :F 1sur 53 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=31716 # 1c1dA.126.174 read from T0547.t2k.many.frag # found chain 1c1dA in training set Warning: unaligning (T0547)A127 (1c1dA)L176 because P (beta_P) conformation "forbidden" or filtered. T0547 126 :G 1c1dA 175 :G T0547 128 :PITVNGF 1c1dA 177 :TVLVQGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31718 # 1thfD.126.74 read from T0547.t2k.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)P128 (1thfD)F77 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1thfD 75 :IP T0547 129 :ITVNGF 1thfD 78 :TVGGGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31720 # 1sr9A.126.136 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)G126 (1sr9A)D137 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1sr9A)T139 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1sr9A)L143 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1sr9A 138 :V T0547 129 :ITV 1sr9A 140 :IQV T0547 133 :GF 1sr9A 144 :TQ Number of specific fragments extracted= 3 number of extra gaps= 3 total=31723 # 7odcA.127.105 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 127 :A 7odcA 106 :E T0547 129 :ITVNGFK 7odcA 108 :VIYANPC Number of specific fragments extracted= 2 number of extra gaps= 1 total=31725 # 1qsgA.127.9 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1qsgA)T12 because P (beta_P) conformation "forbidden" or filtered. T0547 127 :A 1qsgA 7 :K T0547 129 :ITV 1qsgA 9 :ILV T0547 133 :GFK 1qsgA 13 :GVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=31728 # 1y5mA.127.18 read from T0547.t2k.many.frag # found chain 1y5mA in template set T0547 127 :APITVNGFK 1y5mA 35 :KKVIVTGAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31729 # 1y1pA.127.11 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 127 :APITVNGFK 1y1pA 13 :SLVLVTGAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31730 # 1rkxA.127.9 read from T0547.t2k.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)N132 (1rkxA)T15 because P (beta_P) conformation "forbidden" or filtered. T0547 127 :APITV 1rkxA 10 :KRVFV T0547 133 :GFK 1rkxA 16 :GHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=31732 # 1m1nB.127.389 read from T0547.t2k.many.frag # found chain 1m1nB in training set Warning: unaligning (T0547)P128 (1m1nB)H392 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1m1nB)N397 because G (3-10) conformation "forbidden" or filtered. T0547 127 :A 1m1nB 391 :V T0547 129 :ITVN 1m1nB 393 :ILCH T0547 134 :FK 1m1nB 398 :GN Number of specific fragments extracted= 3 number of extra gaps= 2 total=31735 # 1ir6A.127.33 read from T0547.t2k.many.frag # found chain 1ir6A in template set T0547 127 :APITVNGFK 1ir6A 73 :KRIRVHGDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31736 # 1wzuA.127.50 read from T0547.t2k.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1wzuA 51 :D T0547 129 :ITVNGFK 1wzuA 53 :IVFAGVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=31738 # 1thfD.127.75 read from T0547.t2k.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)P128 (1thfD)F77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V131 (1thfD)G80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1thfD)G81 because L (left) conformation "forbidden" or filtered. T0547 127 :A 1thfD 76 :P T0547 129 :IT 1thfD 78 :TV T0547 133 :GFK 1thfD 82 :GIH Number of specific fragments extracted= 3 number of extra gaps= 2 total=31741 # 1izcA.127.95 read from T0547.t2k.many.frag # found chain 1izcA in training set Warning: unaligning (T0547)A127 (1izcA)S96 because N (gamma') conformation "forbidden" or filtered. T0547 128 :PITVNGFK 1izcA 97 :LVIVRVPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=31742 # 1id1A.127.4 read from T0547.t2k.many.frag # found chain 1id1A in template set Warning: unaligning (T0547)P128 (1id1A)F8 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1id1A 7 :H T0547 129 :ITVNGFK 1id1A 9 :IVCGHSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31744 # 1ooyA.127.17 read from T0547.t2k.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)N132 (1ooyA)G23 because P (beta_P) conformation "forbidden" or filtered. T0547 127 :APITV 1ooyA 18 :ATVLV T0547 133 :GFK 1ooyA 24 :GFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31746 # 1t2dA.127.4 read from T0547.t2k.many.frag # found chain 1t2dA in training set Warning: unaligning (T0547)P128 (1t2dA)K5 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1t2dA)G10 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1t2dA)S11 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1t2dA)G12 because P (beta_P) conformation "forbidden" or filtered. T0547 127 :A 1t2dA 4 :A T0547 129 :ITVN 1t2dA 6 :IVLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=31748 # 1yacA.127.105 read from T0547.t2k.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)N132 (1yacA)A111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE in next template residue (1yacA)V114 Warning: unaligning (T0547)K135 because of BadResidue code BAD_PEPTIDE at template residue (1yacA)V114 T0547 127 :APITV 1yacA 106 :KQLII T0547 133 :G 1yacA 112 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=31750 # 1sur.127.45 read from T0547.t2k.many.frag # found chain 1sur in template set Warning: unaligning (T0547)A127 (1sur)E46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1sur)S52 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1sur)F53 because L (left) conformation "forbidden" or filtered. T0547 128 :PITVN 1sur 47 :YVLSS T0547 135 :K 1sur 54 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=31752 # 1ne2A.127.52 read from T0547.t2k.many.frag # found chain 1ne2A in training set Warning: unaligning (T0547)A127 (1ne2A)R50 because E (beta_S) conformation "forbidden" or filtered. T0547 128 :PITVNGFK 1ne2A 51 :SVIDAGTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=31753 # 1cs1A.127.91 read from T0547.t2k.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1cs1A)P97 because P (beta_P) conformation "forbidden" or filtered. T0547 127 :A 1cs1A 92 :D T0547 129 :ITV 1cs1A 94 :LVA T0547 133 :GFK 1cs1A 98 :HDC Number of specific fragments extracted= 3 number of extra gaps= 2 total=31756 # 1nytA.127.119 read from T0547.t2k.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)A127 (1nytA)L120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1nytA)A127 because G (3-10) conformation "forbidden" or filtered. T0547 128 :PITVNG 1nytA 121 :RILLIG T0547 135 :K 1nytA 128 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=31758 # 1p4cA.127.124 read from T0547.t2k.many.frag # found chain 1p4cA in training set Warning: unaligning (T0547)P128 (1p4cA)L126 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1p4cA)Y131 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1p4cA 125 :D T0547 129 :ITVN 1p4cA 127 :WFQL T0547 134 :FK 1p4cA 132 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=31761 # 1wbhA.127.67 read from T0547.t2k.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)T130 (1wbhA)G70 because Y (epsilon') conformation "forbidden" or filtered. T0547 127 :API 1wbhA 67 :AIV T0547 131 :VNGFK 1wbhA 71 :AGTVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31763 # 1ej0A.127.47 read from T0547.t2k.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1ej0A)L85 because P (beta_P) conformation "forbidden" or filtered. T0547 127 :A 1ej0A 77 :G T0547 129 :ITVNGF 1ej0A 79 :IIACDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=31765 # 1i24A.127.11 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1i24A)S2 Warning: unaligning (T0547)P128 (1i24A)R3 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1i24A 4 :VMVIGGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=31766 # 2az4A.127.253 read from T0547.t2k.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. T0547 128 :PITVNGFK 2az4A 255 :QITFNGYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=31767 # 1ofuX.127.57 read from T0547.t2k.many.frag # found chain 1ofuX in template set Warning: unaligning (T0547)P128 (1ofuX)R101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1ofuX)Q106 because P (beta_P) conformation "forbidden" or filtered. T0547 127 :A 1ofuX 100 :E T0547 129 :ITVN 1ofuX 102 :ILLL T0547 134 :FK 1ofuX 107 :AK Number of specific fragments extracted= 3 number of extra gaps= 2 total=31770 # 1gu7A.127.168 read from T0547.t2k.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)P128 (1gu7A)W192 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1gu7A 191 :D T0547 129 :ITVNGFK 1gu7A 193 :FIQNGGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=31772 1tt7A expands to /projects/compbio/data/pdb/1tt7.pdb.gz 1tt7A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1tt7A.127.151 read from T0547.t2k.many.frag # adding 1tt7A to template set # found chain 1tt7A in template set Warning: unaligning (T0547)A127 (1tt7A)G152 because Y (epsilon') conformation "forbidden" or filtered. T0547 128 :PITVNGFK 1tt7A 153 :SVLVTGAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=31773 # 1zk4A.127.6 read from T0547.t2k.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)A127 (1zk4A)K7 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zk4A)V8 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1zk4A)T15 because G (3-10) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1zk4A 9 :AIITGG Number of specific fragments extracted= 1 number of extra gaps= 2 total=31774 # 1u0fA.127.178 read from T0547.t2k.many.frag # found chain 1u0fA in template set T0547 127 :APITVNGFK 1u0fA 178 :PRVWFVSNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31775 # 1lqtA.127.147 read from T0547.t2k.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)P128 (1lqtA)R149 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1lqtA 148 :A T0547 129 :ITVNGFK 1lqtA 150 :AVVIGNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31777 # 1esc.127.95 read from T0547.t2k.many.frag # found chain 1esc in template set Warning: unaligning (T0547)P128 (1esc)Q97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1esc)G101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1esc)G104 because T (delta_L) conformation "forbidden" or filtered. T0547 127 :A 1esc 96 :T T0547 129 :ITV 1esc 98 :LTV T0547 133 :GF 1esc 102 :SL Number of specific fragments extracted= 3 number of extra gaps= 3 total=31780 # 7odcA.128.106 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (7odcA)K115 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 7odcA 108 :VIYANPC Number of specific fragments extracted= 1 number of extra gaps= 2 total=31781 # 1qsgA.128.10 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1qsgA)S16 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1qsgA 9 :ILVTGVA Number of specific fragments extracted= 1 number of extra gaps= 2 total=31782 # 1y5mA.128.19 read from T0547.t2k.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)N132 (1y5mA)T40 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1y5mA)K44 because Y (epsilon') conformation "forbidden" or filtered. T0547 128 :PITV 1y5mA 36 :KVIV T0547 133 :GFK 1y5mA 41 :GAS Number of specific fragments extracted= 2 number of extra gaps= 2 total=31784 # 1y1pA.128.12 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 128 :PITVNGFKD 1y1pA 14 :LVLVTGANG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31785 # 1rkxA.128.10 read from T0547.t2k.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)N132 (1rkxA)T15 because P (beta_P) conformation "forbidden" or filtered. T0547 128 :PITV 1rkxA 11 :RVFV T0547 133 :GFKD 1rkxA 16 :GHTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31787 # 1v2xA.128.23 read from T0547.t2k.many.frag # found chain 1v2xA in training set Warning: unaligning (T0547)P128 (1v2xA)T24 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1v2xA 25 :VLLENVHK Number of specific fragments extracted= 1 number of extra gaps= 1 total=31788 # 1thfD.128.76 read from T0547.t2k.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)P128 (1thfD)F77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V131 (1thfD)G80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1thfD)D85 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :IT 1thfD 78 :TV T0547 132 :NGFK 1thfD 81 :GGIH Number of specific fragments extracted= 2 number of extra gaps= 3 total=31790 # 1m1nB.128.390 read from T0547.t2k.many.frag # found chain 1m1nB in training set Warning: unaligning (T0547)P128 (1m1nB)H392 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1m1nB 393 :ILCHNGNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=31791 # 1yacA.128.106 read from T0547.t2k.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)N132 (1yacA)A111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE in next template residue (1yacA)V114 Warning: unaligning (T0547)K135 because of BadResidue code BAD_PEPTIDE at template residue (1yacA)V114 T0547 128 :PITV 1yacA 107 :QLII T0547 133 :G 1yacA 112 :G T0547 136 :D 1yacA 115 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=31794 # 1izcA.128.96 read from T0547.t2k.many.frag # found chain 1izcA in training set Warning: unaligning (T0547)N132 (1izcA)R101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1izcA)V102 because P (beta_P) conformation "forbidden" or filtered. T0547 128 :PITV 1izcA 97 :LVIV T0547 134 :FKD 1izcA 103 :PKH Number of specific fragments extracted= 2 number of extra gaps= 1 total=31796 # 1wbhA.128.68 read from T0547.t2k.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)D136 (1wbhA)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 128 :PITVNGFK 1wbhA 68 :IVGAGTVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=31797 # 1tt7A.128.152 read from T0547.t2k.many.frag # found chain 1tt7A in template set T0547 128 :PITVNGFKD 1tt7A 153 :SVLVTGATG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31798 # 1ir6A.128.34 read from T0547.t2k.many.frag # found chain 1ir6A in template set T0547 128 :PITVNGFKD 1ir6A 74 :RIRVHGDYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31799 # 1i24A.128.12 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)P128 (1i24A)R3 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1i24A)D10 because G (3-10) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1i24A 4 :VMVIGG T0547 136 :D 1i24A 11 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=31801 # 1u0fA.128.179 read from T0547.t2k.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)N132 (1u0fA)V183 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1u0fA)S184 because G (3-10) conformation "forbidden" or filtered. T0547 128 :PITV 1u0fA 179 :RVWF T0547 134 :FKD 1u0fA 185 :NID Number of specific fragments extracted= 2 number of extra gaps= 1 total=31803 1l0bA expands to /projects/compbio/data/pdb/1l0b.pdb.gz 1l0bA:# 1l0bA.128.8 read from T0547.t2k.many.frag # adding 1l0bA to template set # found chain 1l0bA in template set Warning: unaligning (T0547)P128 (1l0bA)S1597 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1l0bA 1598 :MVVSGLTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=31804 # 1t2dA.128.5 read from T0547.t2k.many.frag # found chain 1t2dA in training set Warning: unaligning (T0547)P128 (1t2dA)K5 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1t2dA 6 :IVLVGSGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=31805 # 1sur.128.46 read from T0547.t2k.many.frag # found chain 1sur in template set Warning: unaligning (T0547)G133 (1sur)S52 because G (3-10) conformation "forbidden" or filtered. T0547 128 :PITVN 1sur 47 :YVLSS T0547 134 :FKD 1sur 53 :FGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31807 # 2c5aA.128.30 read from T0547.t2k.many.frag # found chain 2c5aA in training set T0547 128 :PITVNGFKD 2c5aA 29 :KISITGAGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31808 # 1esc.128.96 read from T0547.t2k.many.frag # found chain 1esc in template set Warning: unaligning (T0547)P128 (1esc)Q97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1esc)G101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1esc)G104 because T (delta_L) conformation "forbidden" or filtered. T0547 129 :ITV 1esc 98 :LTV T0547 133 :GF 1esc 102 :SL T0547 136 :D 1esc 105 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=31811 # 1ofuX.128.58 read from T0547.t2k.many.frag # found chain 1ofuX in template set Warning: unaligning (T0547)P128 (1ofuX)R101 because G (3-10) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1ofuX 102 :ILLLQAKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=31812 # 1cs1A.128.92 read from T0547.t2k.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1cs1A)C100 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1cs1A 94 :LVAPHD T0547 136 :D 1cs1A 101 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=31814 # 1c1dA.128.176 read from T0547.t2k.many.frag # found chain 1c1dA in training set T0547 128 :PITVNGFKD 1c1dA 177 :TVLVQGLGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31815 # 1hdoA.128.4 read from T0547.t2k.many.frag # found chain 1hdoA in training set Warning: unaligning (T0547)P128 (1hdoA)K5 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1hdoA 6 :IAIFGATG Number of specific fragments extracted= 1 number of extra gaps= 1 total=31816 1obfO expands to /projects/compbio/data/pdb/1obf.pdb.gz 1obfO:# 1obfO.128.2 read from T0547.t2k.many.frag # adding 1obfO to template set # found chain 1obfO in template set Warning: unaligning (T0547)K135 (1obfO)G10 because P (beta_P) conformation "forbidden" or filtered. T0547 128 :PITVNGF 1obfO 3 :RVAINGY T0547 136 :D 1obfO 11 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=31818 # 1knwA.128.96 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P128 (1knwA)I97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1knwA)A101 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITV 1knwA 98 :VFT T0547 133 :GFKD 1knwA 102 :DVID Number of specific fragments extracted= 2 number of extra gaps= 2 total=31820 1km4A expands to /projects/compbio/data/pdb/1km4.pdb.gz 1km4A:Skipped atom 697, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 699, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 701, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 703, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 705, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 707, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 709, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 711, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 713, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 715, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 717, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 955, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 957, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 959, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 961, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 963, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 965, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 967, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 969, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1043, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1045, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1047, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1049, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1051, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1053, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1055, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1057, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1059, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1061, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1063, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1234, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1236, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1238, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1240, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1242, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1244, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1246, because occupancy 0.500 <= existing 0.500 in 1km4A Skipped atom 1248, because occupancy 0.500 <= existing 0.500 in 1km4A # 1km4A.128.93 read from T0547.t2k.many.frag # adding 1km4A to template set # found chain 1km4A in template set Warning: unaligning (T0547)P128 (1km4A)A94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1km4A)G99 because G (3-10) conformation "forbidden" or filtered. T0547 129 :ITVN 1km4A 95 :IIVH T0547 134 :FKD 1km4A 100 :FPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=31822 # 1zcjA.128.38 read from T0547.t2k.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)P128 (1zcjA)S298 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1zcjA)L302 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITV 1zcjA 299 :VGV T0547 133 :GFKD 1zcjA 303 :GLGT Number of specific fragments extracted= 2 number of extra gaps= 2 total=31824 # 1nytA.128.120 read from T0547.t2k.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)G133 (1nytA)G126 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1nytA)G128 because P (beta_P) conformation "forbidden" or filtered. T0547 128 :PITVN 1nytA 121 :RILLI T0547 134 :F 1nytA 127 :A T0547 136 :D 1nytA 129 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=31827 # 1p4cA.128.125 read from T0547.t2k.many.frag # found chain 1p4cA in training set Warning: unaligning (T0547)P128 (1p4cA)L126 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1p4cA 127 :WFQLYVIH Number of specific fragments extracted= 1 number of extra gaps= 1 total=31828 # 1yacA.129.107 read from T0547.t2k.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)N132 (1yacA)A111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE in next template residue (1yacA)V114 Warning: unaligning (T0547)K135 because of BadResidue code BAD_PEPTIDE at template residue (1yacA)V114 T0547 129 :ITV 1yacA 108 :LII T0547 133 :G 1yacA 112 :G T0547 136 :DR 1yacA 115 :TE Number of specific fragments extracted= 3 number of extra gaps= 2 total=31831 # 7odcA.129.107 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)R137 (7odcA)Q116 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 7odcA 108 :VIYANPCK Number of specific fragments extracted= 1 number of extra gaps= 1 total=31832 # 1thfD.129.77 read from T0547.t2k.many.frag # found chain 1thfD in training set T0547 129 :ITVNGFKDR 1thfD 78 :TVGGGIHDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31833 # 1wbhA.129.69 read from T0547.t2k.many.frag # found chain 1wbhA in training set T0547 129 :ITVNGFKDR 1wbhA 69 :VGAGTVLNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31834 # 1v2xA.129.24 read from T0547.t2k.many.frag # found chain 1v2xA in training set T0547 129 :ITVNGFKDR 1v2xA 25 :VLLENVHKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31835 # 1l0bA.129.9 read from T0547.t2k.many.frag # found chain 1l0bA in template set T0547 129 :ITVNGFKDR 1l0bA 1598 :MVVSGLTPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31836 # 1ir6A.129.35 read from T0547.t2k.many.frag # found chain 1ir6A in template set T0547 129 :ITVNGFKDR 1ir6A 75 :IRVHGDYDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31837 # 1rkxA.129.11 read from T0547.t2k.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)D136 (1rkxA)G19 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1rkxA 12 :VFVTGHT T0547 137 :R 1rkxA 20 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=31839 # 1u0fA.129.180 read from T0547.t2k.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)N132 (1u0fA)V183 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITV 1u0fA 180 :VWF T0547 133 :GFKDR 1u0fA 184 :SNIDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31841 # 1izcA.129.97 read from T0547.t2k.many.frag # found chain 1izcA in training set Warning: unaligning (T0547)G133 (1izcA)V102 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVN 1izcA 98 :VIVR T0547 134 :FKDR 1izcA 103 :PKHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=31843 # 1ofuX.129.59 read from T0547.t2k.many.frag # found chain 1ofuX in template set Warning: unaligning (T0547)G133 (1ofuX)Q106 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVN 1ofuX 102 :ILLL T0547 134 :FKDR 1ofuX 107 :AKDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=31845 # 1km4A.129.94 read from T0547.t2k.many.frag # found chain 1km4A in template set T0547 129 :ITVNGFKDR 1km4A 95 :IIVHGFPGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31846 # 1y1pA.129.13 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 129 :ITVNGFKDR 1y1pA 15 :VLVTGANGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31847 # 1tt7A.129.153 read from T0547.t2k.many.frag # found chain 1tt7A in template set T0547 129 :ITVNGFKDR 1tt7A 154 :VLVTGATGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31848 # 1obfO.129.3 read from T0547.t2k.many.frag # found chain 1obfO in template set T0547 129 :ITVNGFKDR 1obfO 4 :VAINGYGRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31849 1omzA expands to /projects/compbio/data/pdb/1omz.pdb.gz 1omzA:# 1omzA.129.31 read from T0547.t2k.many.frag # adding 1omzA to template set # found chain 1omzA in template set Warning: unaligning (T0547)K135 (1omzA)N75 because L (left) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1omzA 69 :LIMQTY T0547 136 :DR 1omzA 76 :RT Number of specific fragments extracted= 2 number of extra gaps= 1 total=31851 # 1yrbA.129.111 read from T0547.t2k.many.frag # found chain 1yrbA in training set Warning: unaligning (T0547)G133 (1yrbA)T102 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVN 1yrbA 98 :VLID T0547 134 :FKDR 1yrbA 103 :PGQM Number of specific fragments extracted= 2 number of extra gaps= 1 total=31853 2ahrA expands to /projects/compbio/data/pdb/2ahr.pdb.gz 2ahrA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2ahrA.129.5 read from T0547.t2k.many.frag # adding 2ahrA to template set # found chain 2ahrA in template set Warning: unaligning (T0547)K135 (2ahrA)G9 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITVNGF 2ahrA 3 :IGIIGV T0547 136 :DR 2ahrA 10 :KM Number of specific fragments extracted= 2 number of extra gaps= 1 total=31855 # 2c5aA.129.31 read from T0547.t2k.many.frag # found chain 2c5aA in training set T0547 129 :ITVNGFKDR 2c5aA 30 :ISITGAGGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31856 # 1y5mA.129.20 read from T0547.t2k.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)D136 (1y5mA)K44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R137 (1y5mA)G45 because S (epsilon) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1y5mA 37 :VIVTGAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=31857 # 1qmgA.129.56 read from T0547.t2k.many.frag # found chain 1qmgA in training set T0547 129 :ITVNGFKDR 1qmgA 128 :IGVIGWGSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31858 # 1sur.129.47 read from T0547.t2k.many.frag # found chain 1sur in template set T0547 129 :ITVNGFKDR 1sur 48 :VLSSSFGIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31859 # 1knwA.129.97 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K135 (1knwA)I104 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1knwA 98 :VFTADV T0547 136 :DR 1knwA 105 :DQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=31861 # 1p4cA.129.126 read from T0547.t2k.many.frag # found chain 1p4cA in training set T0547 129 :ITVNGFKDR 1p4cA 127 :WFQLYVIHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31862 # 1hdoA.129.5 read from T0547.t2k.many.frag # found chain 1hdoA in training set T0547 129 :ITVNGFKDR 1hdoA 6 :IAIFGATGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31863 # 1qopB.129.104 read from T0547.t2k.many.frag # found chain 1qopB in training set Warning: unaligning (T0547)D136 (1qopB)G113 because T (delta_L) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1qopB 106 :IIAETGA T0547 137 :R 1qopB 114 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=31865 # 1hd2A.129.69 read from T0547.t2k.many.frag # found chain 1hd2A in training set T0547 129 :ITVNGFKDR 1hd2A 70 :VACLSVNDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31866 1vzyA expands to /projects/compbio/data/pdb/1vzy.pdb.gz 1vzyA:# 1vzyA.129.230 read from T0547.t2k.many.frag # adding 1vzyA to template set # found chain 1vzyA in template set Warning: unaligning (T0547)D136 (1vzyA)S238 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1vzyA 231 :VRFHCPC T0547 137 :R 1vzyA 239 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=31868 # 1qsgA.129.11 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)N132 (1qsgA)T12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1qsgA)S16 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITV 1qsgA 9 :ILV T0547 133 :GFK 1qsgA 13 :GVA T0547 137 :R 1qsgA 17 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=31871 # 1g6sA.129.161 read from T0547.t2k.many.frag # found chain 1g6sA in training set Warning: unaligning (T0547)D136 (1g6sA)S169 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1g6sA 162 :VDVDGSV T0547 137 :R 1g6sA 170 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=31873 # 1yacA.130.108 read from T0547.t2k.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)N132 (1yacA)A111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1yacA)G112 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE in next template residue (1yacA)V114 Warning: unaligning (T0547)K135 because of BadResidue code BAD_PEPTIDE at template residue (1yacA)V114 T0547 130 :TV 1yacA 109 :II T0547 136 :DRE 1yacA 115 :TEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31875 # 1u0fA.130.181 read from T0547.t2k.many.frag # found chain 1u0fA in template set T0547 130 :TVNGFKDRE 1u0fA 181 :WFVSNIDGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31876 # 7odcA.130.108 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G133 (7odcA)N112 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (7odcA)C114 because D (zeta) conformation "forbidden" or filtered. T0547 130 :TVN 7odcA 109 :IYA T0547 134 :F 7odcA 113 :P T0547 136 :DRE 7odcA 115 :KQV Number of specific fragments extracted= 3 number of extra gaps= 2 total=31879 # 1ofuX.130.60 read from T0547.t2k.many.frag # found chain 1ofuX in template set Warning: unaligning (T0547)N132 (1ofuX)L105 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1ofuX)Q106 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1ofuX)D109 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TV 1ofuX 103 :LL T0547 134 :FK 1ofuX 107 :AK T0547 137 :RE 1ofuX 110 :NA Number of specific fragments extracted= 3 number of extra gaps= 2 total=31882 # 1thfD.130.78 read from T0547.t2k.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)N132 (1thfD)G81 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1thfD)D85 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TV 1thfD 79 :VG T0547 133 :GFK 1thfD 82 :GIH T0547 137 :RE 1thfD 86 :FE Number of specific fragments extracted= 3 number of extra gaps= 2 total=31885 # 1omzA.130.32 read from T0547.t2k.many.frag # found chain 1omzA in template set Warning: unaligning (T0547)G133 (1omzA)T73 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1omzA)N75 because L (left) conformation "forbidden" or filtered. T0547 130 :TVN 1omzA 70 :IMQ T0547 134 :F 1omzA 74 :Y T0547 136 :DRE 1omzA 76 :RTD Number of specific fragments extracted= 3 number of extra gaps= 2 total=31888 # 1l0bA.130.10 read from T0547.t2k.many.frag # found chain 1l0bA in template set T0547 130 :TVNGFKDRE 1l0bA 1599 :VVSGLTPKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31889 # 1wbhA.130.70 read from T0547.t2k.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)D136 (1wbhA)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TVNGFK 1wbhA 70 :GAGTVL T0547 137 :RE 1wbhA 77 :PQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=31891 # 1hd2A.130.70 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)G133 (1hd2A)S74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1hd2A)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TVN 1hd2A 71 :ACL T0547 134 :F 1hd2A 75 :V T0547 136 :DRE 1hd2A 77 :DAF Number of specific fragments extracted= 3 number of extra gaps= 2 total=31894 # 1v2xA.130.25 read from T0547.t2k.many.frag # found chain 1v2xA in training set T0547 130 :TVNGFKDRE 1v2xA 26 :LLENVHKPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=31895 # 1vzyA.130.231 read from T0547.t2k.many.frag # found chain 1vzyA in template set Warning: unaligning (T0547)F134 (1vzyA)P236 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1vzyA)S238 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TVNG 1vzyA 232 :RFHC T0547 135 :K 1vzyA 237 :C T0547 137 :RE 1vzyA 239 :KE Number of specific fragments extracted= 3 number of extra gaps= 2 total=31898 # 2ahrA.130.6 read from T0547.t2k.many.frag # found chain 2ahrA in template set Warning: unaligning (T0547)N132 (2ahrA)I6 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (2ahrA)G7 because S (epsilon) conformation "forbidden" or filtered. T0547 130 :TV 2ahrA 4 :GI T0547 134 :FKDRE 2ahrA 8 :VGKMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31900 # 1ir6A.130.36 read from T0547.t2k.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)G133 (1ir6A)G79 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TVN 1ir6A 76 :RVH T0547 134 :FKDRE 1ir6A 80 :DYDAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=31902 # 1yrbA.130.112 read from T0547.t2k.many.frag # found chain 1yrbA in training set Warning: unaligning (T0547)N132 (1yrbA)D101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1yrbA)T102 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TV 1yrbA 99 :LI T0547 134 :FKDRE 1yrbA 103 :PGQME Number of specific fragments extracted= 2 number of extra gaps= 1 total=31904 # 1sr9A.130.140 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)G133 (1sr9A)T144 because E (beta_S) conformation "forbidden" or filtered. T0547 130 :TVN 1sr9A 141 :QVL T0547 134 :FKDRE 1sr9A 145 :QCRPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31906 # 1y5mA.130.21 read from T0547.t2k.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)N132 (1y5mA)T40 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TV 1y5mA 38 :IV T0547 133 :GFKDRE 1y5mA 41 :GASKGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31908 # 1izcA.130.98 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 130 :TVNGFKDRE 1izcA 99 :IVRVPKHDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31909 # 1obfO.130.4 read from T0547.t2k.many.frag # found chain 1obfO in template set Warning: unaligning (T0547)F134 (1obfO)Y9 because G (3-10) conformation "forbidden" or filtered. T0547 130 :TVNG 1obfO 5 :AING T0547 135 :KDRE 1obfO 10 :GRIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31911 # 1rkxA.130.12 read from T0547.t2k.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)D136 (1rkxA)G19 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TVNGFK 1rkxA 13 :FVTGHT T0547 137 :RE 1rkxA 20 :FK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31913 # 1t2dA.130.7 read from T0547.t2k.many.frag # found chain 1t2dA in training set T0547 130 :TVNGFKDRE 1t2dA 7 :VLVGSGMIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31914 1n8yC expands to /projects/compbio/data/pdb/1n8y.pdb.gz 1n8yC:# 1n8yC.130.472 read from T0547.t2k.many.frag # adding 1n8yC to template set # found chain 1n8yC in template set Warning: unaligning (T0547)N132 (1n8yC)S475 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TV 1n8yC 473 :LH T0547 133 :GFKDRE 1n8yC 476 :GNRPEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31916 # 1auoA.130.108 read from T0547.t2k.many.frag # found chain 1auoA in training set Warning: unaligning (T0547)G133 (1auoA)G112 because E (beta_S) conformation "forbidden" or filtered. T0547 130 :TVN 1auoA 109 :FLA T0547 134 :FKDRE 1auoA 113 :FSQGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31918 # 1zcjA.130.40 read from T0547.t2k.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)F134 (1zcjA)L304 because G (3-10) conformation "forbidden" or filtered. T0547 130 :TVNG 1zcjA 300 :GVLG T0547 135 :KDRE 1zcjA 305 :GTMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31920 # 1wo8A.130.5 read from T0547.t2k.many.frag # found chain 1wo8A in training set Warning: unaligning (T0547)G133 (1wo8A)H9 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TVN 1wo8A 6 :LIA T0547 134 :FKDRE 1wo8A 10 :DAKKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=31922 # 1qopB.130.105 read from T0547.t2k.many.frag # found chain 1qopB in training set Warning: unaligning (T0547)N132 (1qopB)E109 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1qopB)G113 because T (delta_L) conformation "forbidden" or filtered. T0547 130 :TV 1qopB 107 :IA T0547 133 :GFK 1qopB 110 :TGA T0547 137 :RE 1qopB 114 :QH Number of specific fragments extracted= 3 number of extra gaps= 2 total=31925 # 1sur.130.48 read from T0547.t2k.many.frag # found chain 1sur in template set Warning: unaligning (T0547)G133 (1sur)S52 because G (3-10) conformation "forbidden" or filtered. T0547 130 :TVN 1sur 49 :LSS T0547 134 :FKDRE 1sur 53 :FGIQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31927 # 1v77A.130.56 read from T0547.t2k.many.frag # found chain 1v77A in training set Warning: unaligning (T0547)G133 (1v77A)S60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1v77A)K63 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TVN 1v77A 57 :ILL T0547 134 :FK 1v77A 61 :NP T0547 137 :RE 1v77A 64 :PS Number of specific fragments extracted= 3 number of extra gaps= 2 total=31930 1w77A expands to /projects/compbio/data/pdb/1w77.pdb.gz 1w77A:# 1w77A.130.74 read from T0547.t2k.many.frag # adding 1w77A to template set # found chain 1w77A in template set Warning: unaligning (T0547)G133 (1w77A)I152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1w77A)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TVN 1w77A 149 :RFA T0547 134 :F 1w77A 153 :P T0547 136 :DRE 1w77A 155 :KER Number of specific fragments extracted= 3 number of extra gaps= 2 total=31933 # 1km4A.130.95 read from T0547.t2k.many.frag # found chain 1km4A in template set T0547 130 :TVNGFKDRE 1km4A 96 :IVHGFPGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31934 # 1y1pA.130.14 read from T0547.t2k.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)N132 (1y1pA)T18 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TV 1y1pA 16 :LV T0547 133 :GFKDRE 1y1pA 19 :GANGFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31936 # 1u0fA.131.182 read from T0547.t2k.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)G133 (1u0fA)S184 because G (3-10) conformation "forbidden" or filtered. T0547 131 :VN 1u0fA 182 :FV T0547 134 :FKDREL 1u0fA 185 :NIDGTH Number of specific fragments extracted= 2 number of extra gaps= 1 total=31938 # 1ofuX.131.61 read from T0547.t2k.many.frag # found chain 1ofuX in template set Warning: unaligning (T0547)N132 (1ofuX)L105 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1ofuX)Q106 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1ofuX)D109 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :V 1ofuX 104 :L T0547 134 :FK 1ofuX 107 :AK T0547 137 :REL 1ofuX 110 :NAA Number of specific fragments extracted= 3 number of extra gaps= 2 total=31941 # 1thfD.131.79 read from T0547.t2k.many.frag # found chain 1thfD in training set T0547 131 :VNGFKDREL 1thfD 80 :GGGIHDFET Number of specific fragments extracted= 1 number of extra gaps= 0 total=31942 # 1yacA.131.109 read from T0547.t2k.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)N132 (1yacA)A111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE in next template residue (1yacA)V114 Warning: unaligning (T0547)K135 because of BadResidue code BAD_PEPTIDE at template residue (1yacA)V114 Warning: unaligning (T0547)R137 (1yacA)E116 because G (3-10) conformation "forbidden" or filtered. T0547 131 :V 1yacA 110 :I T0547 133 :G 1yacA 112 :G T0547 136 :D 1yacA 115 :T T0547 138 :EL 1yacA 117 :VC Number of specific fragments extracted= 4 number of extra gaps= 3 total=31946 # 7odcA.131.109 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 131 :VNGFKDREL 7odcA 110 :YANPCKQVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31947 # 1omzA.131.33 read from T0547.t2k.many.frag # found chain 1omzA in template set Warning: unaligning (T0547)N132 (1omzA)Q72 because P (beta_P) conformation "forbidden" or filtered. T0547 131 :V 1omzA 71 :M T0547 133 :GFKDREL 1omzA 73 :TYNRTDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31949 # 1hd2A.131.71 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)K135 (1hd2A)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :VNGF 1hd2A 72 :CLSV T0547 136 :DREL 1hd2A 77 :DAFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31951 # 1vzyA.131.232 read from T0547.t2k.many.frag # found chain 1vzyA in template set Warning: unaligning (T0547)D136 (1vzyA)S238 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :VNGFK 1vzyA 233 :FHCPC T0547 137 :REL 1vzyA 239 :KER Number of specific fragments extracted= 2 number of extra gaps= 1 total=31953 # 2ahrA.131.7 read from T0547.t2k.many.frag # found chain 2ahrA in template set Warning: unaligning (T0547)K135 (2ahrA)G9 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :VNGF 2ahrA 5 :IIGV T0547 136 :DREL 2ahrA 10 :KMAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=31955 # 1sr9A.131.141 read from T0547.t2k.many.frag # found chain 1sr9A in template set T0547 131 :VNGFKDREL 1sr9A 142 :VLTQCRPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31956 # 1wbhA.131.71 read from T0547.t2k.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)K135 (1wbhA)L75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1wbhA)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :VNGF 1wbhA 71 :AGTV T0547 137 :REL 1wbhA 77 :PQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=31958 # 1v2xA.131.26 read from T0547.t2k.many.frag # found chain 1v2xA in training set T0547 131 :VNGFKDREL 1v2xA 27 :LENVHKPHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31959 # 1l0bA.131.11 read from T0547.t2k.many.frag # found chain 1l0bA in template set T0547 131 :VNGFKDREL 1l0bA 1600 :VSGLTPKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31960 # 1yrbA.131.113 read from T0547.t2k.many.frag # found chain 1yrbA in training set T0547 131 :VNGFKDREL 1yrbA 100 :IDTPGQMET Number of specific fragments extracted= 1 number of extra gaps= 0 total=31961 # 1km4A.131.17 read from T0547.t2k.many.frag # found chain 1km4A in template set Warning: unaligning (T0547)G133 (1km4A)D20 because G (3-10) conformation "forbidden" or filtered. T0547 131 :VN 1km4A 18 :AM T0547 134 :FKDREL 1km4A 21 :LMNRDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=31963 # 1a8y.131.105 read from T0547.t2k.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)G133 (1a8y)G108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1a8y)S111 because E (beta_S) conformation "forbidden" or filtered. T0547 131 :VN 1a8y 106 :YD T0547 134 :FK 1a8y 109 :EF T0547 137 :REL 1a8y 112 :ADT Number of specific fragments extracted= 3 number of extra gaps= 2 total=31966 # 1qmgA.131.58 read from T0547.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)G133 (1qmgA)G132 because S (epsilon) conformation "forbidden" or filtered. T0547 131 :VN 1qmgA 130 :VI T0547 134 :FKDREL 1qmgA 133 :WGSQAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=31968 # 1rkxA.131.13 read from T0547.t2k.many.frag # found chain 1rkxA in template set T0547 131 :VNGFKDREL 1rkxA 14 :VTGHTGFKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31969 # 1obfO.131.5 read from T0547.t2k.many.frag # found chain 1obfO in template set Warning: unaligning (T0547)F134 (1obfO)Y9 because G (3-10) conformation "forbidden" or filtered. T0547 131 :VNG 1obfO 6 :ING T0547 135 :KDREL 1obfO 10 :GRIGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=31971 # 1ir6A.131.37 read from T0547.t2k.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)G133 (1ir6A)G79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1ir6A)Y81 because G (3-10) conformation "forbidden" or filtered. T0547 131 :VN 1ir6A 77 :VH T0547 134 :F 1ir6A 80 :D T0547 136 :DREL 1ir6A 82 :DADG Number of specific fragments extracted= 3 number of extra gaps= 2 total=31974 # 1n8yC.131.473 read from T0547.t2k.many.frag # found chain 1n8yC in template set Warning: unaligning (T0547)N132 (1n8yC)S475 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :V 1n8yC 474 :H T0547 133 :GFKDREL 1n8yC 476 :GNRPEED Number of specific fragments extracted= 2 number of extra gaps= 1 total=31976 # 1uq5A.131.87 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)G133 (1uq5A)H94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1uq5A)N97 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :VN 1uq5A 92 :FF T0547 134 :FK 1uq5A 95 :PD T0547 137 :REL 1uq5A 98 :QED Number of specific fragments extracted= 3 number of extra gaps= 2 total=31979 # 1kqpA.131.42 read from T0547.t2k.many.frag # found chain 1kqpA in training set Warning: unaligning (T0547)K135 (1kqpA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 131 :VNGF 1kqpA 43 :LGIS T0547 136 :DREL 1kqpA 48 :GQDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=31981 1ydgA expands to /projects/compbio/data/pdb/1ydg.pdb.gz 1ydgA:# 1ydgA.131.42 read from T0547.t2k.many.frag # adding 1ydgA to template set # found chain 1ydgA in template set Warning: unaligning (T0547)G133 (1ydgA)E43 because P (beta_P) conformation "forbidden" or filtered. T0547 131 :VN 1ydgA 41 :VR T0547 134 :FKDREL 1ydgA 44 :TAPQDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31983 # 1wo8A.131.6 read from T0547.t2k.many.frag # found chain 1wo8A in training set T0547 131 :VNGFKDREL 1wo8A 7 :IAHDAKKDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31984 # 1v77A.131.57 read from T0547.t2k.many.frag # found chain 1v77A in training set Warning: unaligning (T0547)N132 (1v77A)L59 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1v77A)P62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1v77A)K63 because P (beta_P) conformation "forbidden" or filtered. T0547 131 :V 1v77A 58 :L T0547 133 :GF 1v77A 60 :SN T0547 137 :REL 1v77A 64 :PSL Number of specific fragments extracted= 3 number of extra gaps= 2 total=31987 # 1w77A.131.75 read from T0547.t2k.many.frag # found chain 1w77A in template set Warning: unaligning (T0547)G133 (1w77A)I152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1w77A)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :VN 1w77A 150 :FA T0547 134 :F 1w77A 153 :P T0547 136 :DREL 1w77A 155 :KERQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=31990 1p7tA expands to /projects/compbio/data/pdb/1p7t.pdb.gz 1p7tA:Bad short name: OD for alphabet: pdb_atoms # 1p7tA.131.117 read from T0547.t2k.many.frag # adding 1p7tA to template set # found chain 1p7tA in template set Warning: unaligning (T0547)G133 (1p7tA)P120 because P (beta_P) conformation "forbidden" or filtered. T0547 131 :VN 1p7tA 118 :VV T0547 134 :FKDREL 1p7tA 121 :AMNARY Number of specific fragments extracted= 2 number of extra gaps= 1 total=31992 # 1izcA.131.99 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 131 :VNGFKDREL 1izcA 100 :VRVPKHDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31993 # 1xccA.131.69 read from T0547.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)S72 Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)S72 Warning: unaligning (T0547)D136 (1xccA)S75 because P (beta_P) conformation "forbidden" or filtered. T0547 131 :V 1xccA 70 :G T0547 134 :FK 1xccA 73 :CN T0547 137 :REL 1xccA 76 :KES Number of specific fragments extracted= 3 number of extra gaps= 2 total=31996 # 1sr9A.132.142 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)D136 (1sr9A)R147 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :NGFK 1sr9A 143 :LTQC T0547 137 :RELI 1sr9A 148 :PELI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31998 # 1u0fA.132.183 read from T0547.t2k.many.frag # found chain 1u0fA in template set T0547 132 :NGFKDRELI 1u0fA 183 :VSNIDGTHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31999 # 1ofuX.132.62 read from T0547.t2k.many.frag # found chain 1ofuX in template set Warning: unaligning (T0547)G133 (1ofuX)Q106 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :N 1ofuX 105 :L T0547 134 :FKDRELI 1ofuX 107 :AKDNAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32001 # 1omzA.132.34 read from T0547.t2k.many.frag # found chain 1omzA in template set Warning: unaligning (T0547)G133 (1omzA)T73 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1omzA)N75 because L (left) conformation "forbidden" or filtered. T0547 132 :N 1omzA 72 :Q T0547 134 :F 1omzA 74 :Y T0547 136 :DRELI 1omzA 76 :RTDLL Number of specific fragments extracted= 3 number of extra gaps= 2 total=32004 # 1vzyA.132.233 read from T0547.t2k.many.frag # found chain 1vzyA in template set Warning: unaligning (T0547)D136 (1vzyA)S238 because Y (epsilon') conformation "forbidden" or filtered. T0547 132 :NGFK 1vzyA 234 :HCPC T0547 137 :RELI 1vzyA 239 :KERF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32006 # 1hd2A.132.72 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)N132 (1hd2A)L73 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1hd2A)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 133 :GF 1hd2A 74 :SV T0547 136 :DRELI 1hd2A 77 :DAFVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=32008 # 7odcA.132.110 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G133 (7odcA)N112 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (7odcA)C114 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (7odcA)K115 because E (beta_S) conformation "forbidden" or filtered. T0547 132 :N 7odcA 111 :A T0547 134 :F 7odcA 113 :P T0547 137 :RELI 7odcA 116 :QVSQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=32011 # 1thfD.132.80 read from T0547.t2k.many.frag # found chain 1thfD in training set T0547 132 :NGFKDRELI 1thfD 81 :GGIHDFETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32012 # 1wbhA.132.72 read from T0547.t2k.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)N132 (1wbhA)G72 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1wbhA)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 133 :GFK 1wbhA 73 :TVL T0547 137 :RELI 1wbhA 77 :PQQL Number of specific fragments extracted= 2 number of extra gaps= 2 total=32014 # 1ru3A.132.135 read from T0547.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)G133 (1ru3A)G137 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1ru3A)I139 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :N 1ru3A 136 :T T0547 134 :F 1ru3A 138 :F T0547 136 :DRELI 1ru3A 140 :GDPVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=32017 # 2a1rA.132.44 read from T0547.t2k.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)G133 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2a1rA)G46 T0547 134 :FKDRELI 2a1rA 47 :FDTPEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=32018 # 1km4A.132.18 read from T0547.t2k.many.frag # found chain 1km4A in template set Warning: unaligning (T0547)G133 (1km4A)D20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1km4A)M22 because G (3-10) conformation "forbidden" or filtered. T0547 132 :N 1km4A 19 :M T0547 134 :F 1km4A 21 :L T0547 136 :DRELI 1km4A 23 :NRDDA Number of specific fragments extracted= 3 number of extra gaps= 2 total=32021 # 1ydgA.132.43 read from T0547.t2k.many.frag # found chain 1ydgA in template set Warning: unaligning (T0547)N132 (1ydgA)R42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1ydgA)A45 because P (beta_P) conformation "forbidden" or filtered. T0547 133 :GF 1ydgA 43 :ET T0547 136 :DRELI 1ydgA 46 :PQDVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=32023 # 1yacA.132.110 read from T0547.t2k.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)N132 (1yacA)A111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE in next template residue (1yacA)V114 Warning: unaligning (T0547)K135 because of BadResidue code BAD_PEPTIDE at template residue (1yacA)V114 T0547 133 :G 1yacA 112 :G T0547 136 :DRELI 1yacA 115 :TEVCV Number of specific fragments extracted= 2 number of extra gaps= 2 total=32025 # 1w77A.132.76 read from T0547.t2k.many.frag # found chain 1w77A in template set Warning: unaligning (T0547)N132 (1w77A)A151 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1w77A)I152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1w77A)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :F 1w77A 153 :P T0547 136 :DRELI 1w77A 155 :KERQD Number of specific fragments extracted= 2 number of extra gaps= 2 total=32027 # 1p7tA.132.118 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 132 :NGFKDRELI 1p7tA 119 :VPAMNARYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32028 # 1izcA.132.100 read from T0547.t2k.many.frag # found chain 1izcA in training set Warning: unaligning (T0547)G133 (1izcA)V102 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :N 1izcA 101 :R T0547 134 :FKDRELI 1izcA 103 :PKHDEVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32030 # 2ahrA.132.8 read from T0547.t2k.many.frag # found chain 2ahrA in template set Warning: unaligning (T0547)K135 (2ahrA)G9 because Y (epsilon') conformation "forbidden" or filtered. T0547 132 :NGF 2ahrA 6 :IGV T0547 136 :DRELI 2ahrA 10 :KMASA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32032 # 1wo8A.132.7 read from T0547.t2k.many.frag # found chain 1wo8A in training set Warning: unaligning (T0547)G133 (1wo8A)H9 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :N 1wo8A 8 :A T0547 134 :FKDRELI 1wo8A 10 :DAKKDEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=32034 # 1a8y.132.106 read from T0547.t2k.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)G133 (1a8y)G108 because Y (epsilon') conformation "forbidden" or filtered. T0547 132 :N 1a8y 107 :D T0547 134 :FKDRELI 1a8y 109 :EFSADTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32036 # 1uq5A.132.88 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)D136 (1uq5A)N97 because Y (epsilon') conformation "forbidden" or filtered. T0547 132 :NGFK 1uq5A 93 :FHPD T0547 137 :RELI 1uq5A 98 :QEDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32038 # 1r6wA.132.192 read from T0547.t2k.many.frag # found chain 1r6wA in training set T0547 132 :NGFKDRELI 1r6wA 191 :EPCKTRDDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32039 # 1v77A.132.58 read from T0547.t2k.many.frag # found chain 1v77A in training set Warning: unaligning (T0547)F134 (1v77A)N61 because L (left) conformation "forbidden" or filtered. T0547 132 :NG 1v77A 59 :LS T0547 135 :KDRELI 1v77A 62 :PKPSLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32041 # 1tfzA.132.31 read from T0547.t2k.many.frag # found chain 1tfzA in training set T0547 132 :NGFKDRELI 1tfzA 32 :WCGDATNVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32042 1u9iA expands to /projects/compbio/data/pdb/1u9i.pdb.gz 1u9iA:Bad short name: SEP for alphabet: ExtAA Replacing SEP with S Bad short name: SEP for alphabet: ExtAA Replacing SEP with S Bad short name: SEP for alphabet: ExtAA Replacing SEP with S Bad short name: SEP for alphabet: ExtAA Replacing SEP with S Bad short name: SEP for alphabet: ExtAA Replacing SEP with S Bad short name: SEP for alphabet: ExtAA Replacing SEP with S Bad short name: P for alphabet: pdb_atoms Bad short name: O1P for alphabet: pdb_atoms Bad short name: O2P for alphabet: pdb_atoms Bad short name: O3P for alphabet: pdb_atoms Bad short name: P for alphabet: pdb_atoms Bad short name: O1P for alphabet: pdb_atoms Bad short name: O2P for alphabet: pdb_atoms Bad short name: O3P for alphabet: pdb_atoms # 1u9iA.132.74 read from T0547.t2k.many.frag # adding 1u9iA to template set # found chain 1u9iA in template set Warning: unaligning (T0547)G133 (1u9iA)F76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1u9iA)E78 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :N 1u9iA 75 :T T0547 134 :F 1u9iA 77 :E T0547 136 :DRELI 1u9iA 79 :TPQDI Number of specific fragments extracted= 3 number of extra gaps= 2 total=32045 # 1l0bA.132.12 read from T0547.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)K135 (1l0bA)T1604 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :NGF 1l0bA 1601 :SGL T0547 136 :DRELI 1l0bA 1605 :PKEVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=32047 # 1epuA.132.72 read from T0547.t2k.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)G133 (1epuA)I74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1epuA)P76 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1epuA)T77 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :N 1epuA 73 :L T0547 134 :F 1epuA 75 :T T0547 137 :RELI 1epuA 78 :EESV Number of specific fragments extracted= 3 number of extra gaps= 2 total=32050 # 1kqpA.132.43 read from T0547.t2k.many.frag # found chain 1kqpA in training set Warning: unaligning (T0547)N132 (1kqpA)G44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1kqpA)I45 because N (gamma') conformation "forbidden" or filtered. T0547 134 :FKDRELI 1kqpA 46 :SGGQDST Number of specific fragments extracted= 1 number of extra gaps= 1 total=32051 # 1sur.132.50 read from T0547.t2k.many.frag # found chain 1sur in template set Warning: unaligning (T0547)K135 (1sur)G54 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :NGF 1sur 51 :SSF T0547 136 :DRELI 1sur 55 :IQAAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32053 # 1v2xA.132.27 read from T0547.t2k.many.frag # found chain 1v2xA in training set T0547 132 :NGFKDRELI 1v2xA 28 :ENVHKPHNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32054 # 1sr9A.133.143 read from T0547.t2k.many.frag # found chain 1sr9A in template set T0547 133 :GFKDRELIN 1sr9A 144 :TQCRPELIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32055 # 1omzA.133.35 read from T0547.t2k.many.frag # found chain 1omzA in template set Warning: unaligning (T0547)K135 (1omzA)N75 because L (left) conformation "forbidden" or filtered. T0547 133 :GF 1omzA 73 :TY T0547 136 :DRELIN 1omzA 76 :RTDLLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32057 # 1u0fA.133.184 read from T0547.t2k.many.frag # found chain 1u0fA in template set T0547 133 :GFKDRELIN 1u0fA 184 :SNIDGTHIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32058 # 1vzyA.133.234 read from T0547.t2k.many.frag # found chain 1vzyA in template set Warning: unaligning (T0547)D136 (1vzyA)S238 because Y (epsilon') conformation "forbidden" or filtered. T0547 133 :GFK 1vzyA 235 :CPC T0547 137 :RELIN 1vzyA 239 :KERFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32060 # 1ru3A.133.136 read from T0547.t2k.many.frag # found chain 1ru3A in template set T0547 133 :GFKDRELIN 1ru3A 137 :GFIGDPVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32061 # 1wo8A.133.8 read from T0547.t2k.many.frag # found chain 1wo8A in training set T0547 133 :GFKDRELIN 1wo8A 9 :HDAKKDEMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32062 # 1hd2A.133.73 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)K135 (1hd2A)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 133 :GF 1hd2A 74 :SV T0547 136 :DRELIN 1hd2A 77 :DAFVTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32064 # 1ofuX.133.63 read from T0547.t2k.many.frag # found chain 1ofuX in template set Warning: unaligning (T0547)G133 (1ofuX)Q106 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :FKDRELIN 1ofuX 107 :AKDNAAAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=32065 # 7odcA.133.111 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K135 (7odcA)C114 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (7odcA)K115 because E (beta_S) conformation "forbidden" or filtered. T0547 133 :GF 7odcA 112 :NP T0547 137 :RELIN 7odcA 116 :QVSQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32067 # 2a1rA.133.45 read from T0547.t2k.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)G133 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2a1rA)G46 T0547 134 :FKDRELIN 2a1rA 47 :FDTPEERY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32068 # 1km4A.133.19 read from T0547.t2k.many.frag # found chain 1km4A in template set T0547 133 :GFKDRELIN 1km4A 20 :DLMNRDDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32069 # 1r6wA.133.193 read from T0547.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)D136 (1r6wA)T195 because E (beta_S) conformation "forbidden" or filtered. T0547 133 :GFK 1r6wA 192 :PCK T0547 137 :RELIN 1r6wA 196 :RDDSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32071 # 1thfD.133.81 read from T0547.t2k.many.frag # found chain 1thfD in training set T0547 133 :GFKDRELIN 1thfD 82 :GIHDFETAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32072 # 1u9iA.133.75 read from T0547.t2k.many.frag # found chain 1u9iA in template set T0547 133 :GFKDRELIN 1u9iA 76 :FEETPQDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=32073 # 1tfzA.133.32 read from T0547.t2k.many.frag # found chain 1tfzA in training set T0547 133 :GFKDRELIN 1tfzA 33 :CGDATNVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32074 # 1w77A.133.77 read from T0547.t2k.many.frag # found chain 1w77A in template set Warning: unaligning (T0547)K135 (1w77A)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 133 :GF 1w77A 152 :IP T0547 136 :DRELIN 1w77A 155 :KERQDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32076 # 1wbhA.133.73 read from T0547.t2k.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)D136 (1wbhA)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 133 :GFK 1wbhA 73 :TVL T0547 137 :RELIN 1wbhA 77 :PQQLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32078 2f6kA expands to /projects/compbio/data/pdb/2f6k.pdb.gz 2f6kA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2f6kA.133.61 read from T0547.t2k.many.frag # adding 2f6kA to template set # found chain 2f6kA in template set Warning: unaligning (T0547)K135 (2f6kA)G64 because T (delta_L) conformation "forbidden" or filtered. T0547 133 :GF 2f6kA 62 :NF T0547 136 :DRELIN 2f6kA 65 :DKAETI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32080 # 1epuA.133.73 read from T0547.t2k.many.frag # found chain 1epuA in template set T0547 133 :GFKDRELIN 1epuA 74 :ITPTEESVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32081 # 1o4wA.133.95 read from T0547.t2k.many.frag # found chain 1o4wA in template set Warning: unaligning (T0547)D136 (1o4wA)G87 because S (epsilon) conformation "forbidden" or filtered. T0547 133 :GFK 1o4wA 84 :ESE T0547 137 :RELIN 1o4wA 88 :DPSLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32083 # 1izcA.133.101 read from T0547.t2k.many.frag # found chain 1izcA in training set Warning: unaligning (T0547)G133 (1izcA)V102 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :FKDRELIN 1izcA 103 :PKHDEVSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=32084 1zs3A expands to /projects/compbio/data/pdb/1zs3.pdb.gz 1zs3A:# 1zs3A.133.85 read from T0547.t2k.many.frag # adding 1zs3A to template set # found chain 1zs3A in template set Warning: unaligning (T0547)G133 (1zs3A)V86 because E (beta_S) conformation "forbidden" or filtered. T0547 134 :FKDRELIN 1zs3A 87 :PSTTEEFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=32085 # 1ekqA.133.24 read from T0547.t2k.many.frag # found chain 1ekqA in training set Warning: unaligning (T0547)G133 (1ekqA)N25 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :FKDRELIN 1ekqA 26 :NVVTNFTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=32086 # 1pii.133.139 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 133 :GFKDRELIN 1pii 140 :VLDDDQYRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32087 # 1wehA.133.82 read from T0547.t2k.many.frag # found chain 1wehA in training set T0547 133 :GFKDRELIN 1wehA 83 :PAATLPQRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32088 # 1p7tA.133.119 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 133 :GFKDRELIN 1p7tA 120 :PAMNARYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32089 # 1knwA.133.101 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 133 :GFKDRELIN 1knwA 102 :DVIDQATLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32090 # 1k92A.133.16 read from T0547.t2k.many.frag # found chain 1k92A in training set Warning: unaligning (T0547)K135 (1k92A)G19 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1k92A)G20 because P (beta_P) conformation "forbidden" or filtered. T0547 133 :GF 1k92A 17 :FS T0547 137 :RELIN 1k92A 21 :LDTSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32092 # 1uq5A.133.89 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)D136 (1uq5A)N97 because Y (epsilon') conformation "forbidden" or filtered. T0547 133 :GFK 1uq5A 94 :HPD T0547 137 :RELIN 1uq5A 98 :QEDAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32094 # 1ei9A.133.44 read from T0547.t2k.many.frag # found chain 1ei9A in template set Warning: unaligning (T0547)F134 (1ei9A)G73 because S (epsilon) conformation "forbidden" or filtered. T0547 133 :G 1ei9A 72 :I T0547 135 :KDRELIN 1ei9A 74 :KTLREDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32096 # 1sr9A.134.144 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)D136 (1sr9A)R147 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :FK 1sr9A 145 :QC T0547 137 :RELINI 1sr9A 148 :PELIER Number of specific fragments extracted= 2 number of extra gaps= 1 total=32098 # 1wo8A.134.9 read from T0547.t2k.many.frag # found chain 1wo8A in training set T0547 134 :FKDRELINI 1wo8A 10 :DAKKDEMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32099 # 1omzA.134.36 read from T0547.t2k.many.frag # found chain 1omzA in template set Warning: unaligning (T0547)K135 (1omzA)N75 because L (left) conformation "forbidden" or filtered. T0547 134 :F 1omzA 74 :Y T0547 136 :DRELINI 1omzA 76 :RTDLLLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32101 # 1ru3A.134.137 read from T0547.t2k.many.frag # found chain 1ru3A in template set T0547 134 :FKDRELINI 1ru3A 138 :FIGDPVVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32102 # 1hd2A.134.74 read from T0547.t2k.many.frag # found chain 1hd2A in training set T0547 134 :FKDRELINI 1hd2A 75 :VNDAFVTGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32103 # 1vzyA.134.235 read from T0547.t2k.many.frag # found chain 1vzyA in template set Warning: unaligning (T0547)D136 (1vzyA)S238 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :FK 1vzyA 236 :PC T0547 137 :RELINI 1vzyA 239 :KERFET Number of specific fragments extracted= 2 number of extra gaps= 1 total=32105 # 1km4A.134.20 read from T0547.t2k.many.frag # found chain 1km4A in template set T0547 134 :FKDRELINI 1km4A 21 :LMNRDDALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32106 # 1o4wA.134.96 read from T0547.t2k.many.frag # found chain 1o4wA in template set Warning: unaligning (T0547)D136 (1o4wA)G87 because S (epsilon) conformation "forbidden" or filtered. T0547 134 :FK 1o4wA 85 :SE T0547 137 :RELINI 1o4wA 88 :DPSLIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32108 # 2a1rA.134.46 read from T0547.t2k.many.frag # found chain 2a1rA in template set T0547 134 :FKDRELINI 2a1rA 47 :FDTPEERYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32109 # 1u0fA.134.185 read from T0547.t2k.many.frag # found chain 1u0fA in template set T0547 134 :FKDRELINI 1u0fA 185 :NIDGTHIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32110 # 1r6wA.134.194 read from T0547.t2k.many.frag # found chain 1r6wA in training set T0547 134 :FKDRELINI 1r6wA 193 :CKTRDDSRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32111 # 1izcA.134.102 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 134 :FKDRELINI 1izcA 103 :PKHDEVSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32112 # 2f6kA.134.62 read from T0547.t2k.many.frag # found chain 2f6kA in template set T0547 134 :FKDRELINI 2f6kA 63 :FGDKAETIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32113 # 7odcA.134.112 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 134 :FKDRELINI 7odcA 113 :PCKQVSQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32114 # 1u9iA.134.76 read from T0547.t2k.many.frag # found chain 1u9iA in template set T0547 134 :FKDRELINI 1u9iA 77 :EETPQDIIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32115 # 1tfzA.134.33 read from T0547.t2k.many.frag # found chain 1tfzA in training set T0547 134 :FKDRELINI 1tfzA 34 :GDATNVARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32116 # 1ofuX.134.64 read from T0547.t2k.many.frag # found chain 1ofuX in template set Warning: unaligning (T0547)D136 (1ofuX)D109 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :FK 1ofuX 107 :AK T0547 137 :RELINI 1ofuX 110 :NAAALA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32118 # 1w77A.134.78 read from T0547.t2k.many.frag # found chain 1w77A in template set Warning: unaligning (T0547)K135 (1w77A)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :F 1w77A 153 :P T0547 136 :DRELINI 1w77A 155 :KERQDSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32120 # 1wu7A.134.191 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 134 :FKDRELINI 1wu7A 192 :KISREEFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32121 # 1wehA.134.83 read from T0547.t2k.many.frag # found chain 1wehA in training set T0547 134 :FKDRELINI 1wehA 84 :AATLPQRIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32122 1efpB expands to /projects/compbio/data/pdb/1efp.pdb.gz 1efpB:# 1efpB.134.64 read from T0547.t2k.many.frag # adding 1efpB to template set # found chain 1efpB in template set T0547 134 :FKDRELINI 1efpB 65 :VKQAAETLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32123 # 1gsoA.134.51 read from T0547.t2k.many.frag # found chain 1gsoA in training set T0547 134 :FKDRELINI 1gsoA 50 :VTDIPALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32124 # 1zs3A.134.86 read from T0547.t2k.many.frag # found chain 1zs3A in template set T0547 134 :FKDRELINI 1zs3A 87 :PSTTEEFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32125 # 1epuA.134.74 read from T0547.t2k.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)D136 (1epuA)T77 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :FK 1epuA 75 :TP T0547 137 :RELINI 1epuA 78 :EESVKC Number of specific fragments extracted= 2 number of extra gaps= 1 total=32127 # 1w8sA.134.39 read from T0547.t2k.many.frag # found chain 1w8sA in template set T0547 134 :FKDRELINI 1w8sA 40 :SADPEYILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32128 # 1wbhA.134.74 read from T0547.t2k.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)D136 (1wbhA)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :FK 1wbhA 74 :VL T0547 137 :RELINI 1wbhA 77 :PQQLAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32130 1f3vA expands to /projects/compbio/data/pdb/1f3v.pdb.gz 1f3vA:# 1f3vA.134.128 read from T0547.t2k.many.frag # adding 1f3vA to template set # found chain 1f3vA in template set Warning: unaligning (T0547)D136 (1f3vA)D131 because D (zeta) conformation "forbidden" or filtered. T0547 134 :FK 1f3vA 129 :LA T0547 137 :RELINI 1f3vA 132 :EERCLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32132 # 1knwA.134.102 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 134 :FKDRELINI 1knwA 103 :VIDQATLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=32133 1wb9A expands to /projects/compbio/data/pdb/1wb9.pdb.gz 1wb9A:# 1wb9A.134.427 read from T0547.t2k.many.frag # adding 1wb9A to template set # found chain 1wb9A in template set T0547 134 :FKDRELINI 1wb9A 428 :GYNEELDEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=32134 # 1vkfA.134.68 read from T0547.t2k.many.frag # found chain 1vkfA in training set Warning: unaligning (T0547)R137 (1vkfA)G60 because S (epsilon) conformation "forbidden" or filtered. T0547 134 :FKD 1vkfA 57 :LGE T0547 138 :ELINI 1vkfA 61 :EEAIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32136 # 1wo8A.135.10 read from T0547.t2k.many.frag # found chain 1wo8A in training set T0547 135 :KDRELINIG 1wo8A 11 :AKKDEMVAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32137 # 1sr9A.135.145 read from T0547.t2k.many.frag # found chain 1sr9A in template set T0547 135 :KDRELINIG 1sr9A 146 :CRPELIERT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32138 # 1o4wA.135.97 read from T0547.t2k.many.frag # found chain 1o4wA in template set T0547 135 :KDRELINIG 1o4wA 86 :EGDPSLIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32139 # 1r6wA.135.195 read from T0547.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)D136 (1r6wA)T195 because E (beta_S) conformation "forbidden" or filtered. T0547 135 :K 1r6wA 194 :K T0547 137 :RELINIG 1r6wA 196 :RDDSRAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32141 # 1km4A.135.21 read from T0547.t2k.many.frag # found chain 1km4A in template set T0547 135 :KDRELINIG 1km4A 22 :MNRDDALRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32142 # 1omzA.135.37 read from T0547.t2k.many.frag # found chain 1omzA in template set T0547 135 :KDRELINIG 1omzA 75 :NRTDLLLRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32143 # 1efpB.135.65 read from T0547.t2k.many.frag # found chain 1efpB in template set T0547 135 :KDRELINIG 1efpB 66 :KQAAETLRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32144 # 1ru3A.135.138 read from T0547.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)G143 (1ru3A)Y147 because G (3-10) conformation "forbidden" or filtered. T0547 135 :KDRELINI 1ru3A 139 :IGDPVVRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=32145 # 1izcA.135.103 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 135 :KDRELINIG 1izcA 104 :KHDEVSLST Number of specific fragments extracted= 1 number of extra gaps= 0 total=32146 # 1vzyA.135.236 read from T0547.t2k.many.frag # found chain 1vzyA in template set Warning: unaligning (T0547)D136 (1vzyA)S238 because Y (epsilon') conformation "forbidden" or filtered. T0547 135 :K 1vzyA 237 :C T0547 137 :RELINIG 1vzyA 239 :KERFETA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32148 # 1hd2A.135.75 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)K135 (1hd2A)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 136 :DRELINIG 1hd2A 77 :DAFVTGEW Number of specific fragments extracted= 1 number of extra gaps= 1 total=32149 # 2a1rA.135.47 read from T0547.t2k.many.frag # found chain 2a1rA in template set T0547 135 :KDRELINIG 2a1rA 48 :DTPEERYQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32150 # 1tfzA.135.34 read from T0547.t2k.many.frag # found chain 1tfzA in training set T0547 135 :KDRELINIG 1tfzA 35 :DATNVARRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32151 # 1w8sA.135.40 read from T0547.t2k.many.frag # found chain 1w8sA in template set T0547 135 :KDRELINIG 1w8sA 41 :ADPEYILRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32152 # 1vkfA.135.69 read from T0547.t2k.many.frag # found chain 1vkfA in training set Warning: unaligning (T0547)R137 (1vkfA)G60 because S (epsilon) conformation "forbidden" or filtered. T0547 135 :KD 1vkfA 58 :GE T0547 138 :ELINIG 1vkfA 61 :EEAILF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32154 # 7odcA.135.113 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 135 :KDRELINIG 7odcA 114 :CKQVSQIKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32155 # 1gsoA.135.52 read from T0547.t2k.many.frag # found chain 1gsoA in training set T0547 135 :KDRELINIG 1gsoA 51 :TDIPALLDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32156 # 1wu7A.135.192 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 135 :KDRELINIG 1wu7A 193 :ISREEFVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32157 # 2f6kA.135.63 read from T0547.t2k.many.frag # found chain 2f6kA in template set T0547 135 :KDRELINIG 2f6kA 64 :GDKAETIRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32158 # 1u9iA.135.77 read from T0547.t2k.many.frag # found chain 1u9iA in template set T0547 135 :KDRELINIG 1u9iA 78 :ETPQDIIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=32159 # 1wehA.135.84 read from T0547.t2k.many.frag # found chain 1wehA in training set T0547 135 :KDRELINIG 1wehA 85 :ATLPQRIGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32160 # 1wb9A.135.428 read from T0547.t2k.many.frag # found chain 1wb9A in template set T0547 135 :KDRELINIG 1wb9A 429 :YNEELDEWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32161 # 1w77A.135.79 read from T0547.t2k.many.frag # found chain 1w77A in template set T0547 135 :KDRELINIG 1w77A 154 :GKERQDSVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32162 # 1f3vA.135.129 read from T0547.t2k.many.frag # found chain 1f3vA in template set Warning: unaligning (T0547)D136 (1f3vA)D131 because D (zeta) conformation "forbidden" or filtered. T0547 135 :K 1f3vA 130 :A T0547 137 :RELINIG 1f3vA 132 :EERCLSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=32164 # 1knwA.135.102 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)D136 (1knwA)I104 because E (beta_S) conformation "forbidden" or filtered. T0547 135 :K 1knwA 103 :V T0547 137 :RELINIG 1knwA 105 :DQATLER Number of specific fragments extracted= 2 number of extra gaps= 1 total=32166 # 1pii.135.141 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 135 :KDRELINIG 1pii 142 :DDDQYRQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32167 # 1ccwA.135.40 read from T0547.t2k.many.frag # found chain 1ccwA in training set T0547 135 :KDRELINIG 1ccwA 41 :SPQELFIKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32168 # 1epuA.135.75 read from T0547.t2k.many.frag # found chain 1epuA in template set T0547 135 :KDRELINIG 1epuA 76 :PTEESVKCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32169 # 1nar.135.168 read from T0547.t2k.many.frag # found chain 1nar in training set T0547 135 :KDRELINIG 1nar 169 :NNSSHYQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32170 # 1izoA.135.87 read from T0547.t2k.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)D136 (1izoA)G89 because S (epsilon) conformation "forbidden" or filtered. T0547 135 :K 1izoA 88 :D T0547 137 :RELINIG 1izoA 90 :SAHIHRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32172 # 1o4wA.136.98 read from T0547.t2k.many.frag # found chain 1o4wA in template set T0547 136 :DRELINIGF 1o4wA 87 :GDPSLIEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32173 # 1wo8A.136.11 read from T0547.t2k.many.frag # found chain 1wo8A in training set T0547 136 :DRELINIGF 1wo8A 12 :KKDEMVAFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=32174 # 1efpB.136.66 read from T0547.t2k.many.frag # found chain 1efpB in template set T0547 136 :DRELINIGF 1efpB 67 :QAAETLRTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32175 # 1r6wA.136.196 read from T0547.t2k.many.frag # found chain 1r6wA in training set T0547 136 :DRELINIGF 1r6wA 195 :TRDDSRAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32176 # 7odcA.136.114 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 136 :DRELINIGF 7odcA 115 :KQVSQIKYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32177 # 1izcA.136.104 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 136 :DRELINIGF 1izcA 105 :HDEVSLSTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32178 # 1wu7A.136.193 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 136 :DRELINIGF 1wu7A 194 :SREEFVDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32179 # 1w8sA.136.41 read from T0547.t2k.many.frag # found chain 1w8sA in template set T0547 136 :DRELINIGF 1w8sA 42 :DPEYILRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32180 # 1wb9A.136.429 read from T0547.t2k.many.frag # found chain 1wb9A in template set T0547 136 :DRELINIGF 1wb9A 430 :NEELDEWRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32181 # 1ccwA.136.41 read from T0547.t2k.many.frag # found chain 1ccwA in training set Warning: unaligning (T0547)D136 (1ccwA)P42 because P (beta_P) conformation "forbidden" or filtered. T0547 137 :RELINIGF 1ccwA 43 :QELFIKAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=32182 # 1sr9A.136.146 read from T0547.t2k.many.frag # found chain 1sr9A in template set T0547 136 :DRELINIGF 1sr9A 147 :RPELIERTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32183 # 1vkfA.136.70 read from T0547.t2k.many.frag # found chain 1vkfA in training set T0547 136 :DRELINIGF 1vkfA 59 :EGEEAILFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32184 # 1gsoA.136.53 read from T0547.t2k.many.frag # found chain 1gsoA in training set T0547 136 :DRELINIGF 1gsoA 52 :DIPALLDFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32185 # 1km4A.136.22 read from T0547.t2k.many.frag # found chain 1km4A in template set T0547 136 :DRELINIGF 1km4A 23 :NRDDALRVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32186 # 1wehA.136.85 read from T0547.t2k.many.frag # found chain 1wehA in training set T0547 136 :DRELINIGF 1wehA 86 :TLPQRIGRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32187 # 2a1rA.136.48 read from T0547.t2k.many.frag # found chain 2a1rA in template set T0547 136 :DRELINIGF 2a1rA 49 :TPEERYQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32188 # 1omzA.136.38 read from T0547.t2k.many.frag # found chain 1omzA in template set T0547 136 :DRELINIGF 1omzA 76 :RTDLLLRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32189 # 1tfzA.136.35 read from T0547.t2k.many.frag # found chain 1tfzA in training set T0547 136 :DRELINIGF 1tfzA 36 :ATNVARRFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32190 # 1ru3A.136.139 read from T0547.t2k.many.frag # found chain 1ru3A in template set T0547 136 :DRELINIGF 1ru3A 140 :GDPVVRQYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32191 # 1nar.136.169 read from T0547.t2k.many.frag # found chain 1nar in training set T0547 136 :DRELINIGF 1nar 170 :NSSHYQKLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32192 # 1vzyA.136.237 read from T0547.t2k.many.frag # found chain 1vzyA in template set T0547 136 :DRELINIGF 1vzyA 238 :SKERFETAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32193 # 1f3vA.136.130 read from T0547.t2k.many.frag # found chain 1f3vA in template set T0547 136 :DRELINIGF 1f3vA 131 :DEERCLSCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32194 # 1w77A.136.80 read from T0547.t2k.many.frag # found chain 1w77A in template set T0547 136 :DRELINIGF 1w77A 155 :KERQDSVYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32195 # 1u9iA.136.78 read from T0547.t2k.many.frag # found chain 1u9iA in template set T0547 136 :DRELINIGF 1u9iA 79 :TPQDIIKNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32196 # 1pii.136.142 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 136 :DRELINIGF 1pii 143 :DDQYRQLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32197 # 1hd2A.136.76 read from T0547.t2k.many.frag # found chain 1hd2A in training set T0547 136 :DRELINIGF 1hd2A 77 :DAFVTGEWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32198 # 1epuA.136.76 read from T0547.t2k.many.frag # found chain 1epuA in template set T0547 136 :DRELINIGF 1epuA 77 :TEESVKCLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=32199 # 1izoA.136.88 read from T0547.t2k.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)D136 (1izoA)G89 because S (epsilon) conformation "forbidden" or filtered. T0547 137 :RELINIGF 1izoA 90 :SAHIHRKM Number of specific fragments extracted= 1 number of extra gaps= 1 total=32200 # 1ekqA.136.27 read from T0547.t2k.many.frag # found chain 1ekqA in training set T0547 136 :DRELINIGF 1ekqA 28 :VTNFTANGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32201 # 1sur.136.54 read from T0547.t2k.many.frag # found chain 1sur in template set T0547 136 :DRELINIGF 1sur 55 :IQAAVSLHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32202 # 1o4wA.137.99 read from T0547.t2k.many.frag # found chain 1o4wA in template set T0547 137 :RELINIGFI 1o4wA 88 :DPSLIEAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32203 # 1efpB.137.67 read from T0547.t2k.many.frag # found chain 1efpB in template set T0547 137 :RELINIGFI 1efpB 68 :AAETLRTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32204 # 7odcA.137.115 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 137 :RELINIGFI 7odcA 116 :QVSQIKYAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32205 # 1izcA.137.105 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 137 :RELINIGFI 1izcA 106 :DEVSLSTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32206 # 1ccwA.137.42 read from T0547.t2k.many.frag # found chain 1ccwA in training set T0547 137 :RELINIGFI 1ccwA 43 :QELFIKAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32207 # 1r6wA.137.197 read from T0547.t2k.many.frag # found chain 1r6wA in training set T0547 137 :RELINIGFI 1r6wA 196 :RDDSRAFAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32208 # 1wu7A.137.194 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 137 :RELINIGFI 1wu7A 195 :REEFVDQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32209 # 1gsoA.137.54 read from T0547.t2k.many.frag # found chain 1gsoA in training set T0547 137 :RELINIGFI 1gsoA 53 :IPALLDFAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32210 # 1w8sA.137.42 read from T0547.t2k.many.frag # found chain 1w8sA in template set T0547 137 :RELINIGFI 1w8sA 43 :PEYILRLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32211 # 1wo8A.137.12 read from T0547.t2k.many.frag # found chain 1wo8A in training set T0547 137 :RELINIGFI 1wo8A 13 :KDEMVAFCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32212 # 1vkfA.137.71 read from T0547.t2k.many.frag # found chain 1vkfA in training set Warning: unaligning (T0547)R137 (1vkfA)G60 because S (epsilon) conformation "forbidden" or filtered. T0547 138 :ELINIGFI 1vkfA 61 :EEAILFVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=32213 # 1wb9A.137.430 read from T0547.t2k.many.frag # found chain 1wb9A in template set T0547 137 :RELINIGFI 1wb9A 431 :EELDEWRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32214 # 1ekqA.137.28 read from T0547.t2k.many.frag # found chain 1ekqA in training set T0547 137 :RELINIGFI 1ekqA 29 :TNFTANGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32215 # 1z0wA.137.134 read from T0547.t2k.many.frag # found chain 1z0wA in training set T0547 137 :RELINIGFI 1z0wA 549 :VTQKIEAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32216 # 1wehA.137.86 read from T0547.t2k.many.frag # found chain 1wehA in training set T0547 137 :RELINIGFI 1wehA 87 :LPQRIGRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32217 # 1nar.137.170 read from T0547.t2k.many.frag # found chain 1nar in training set T0547 137 :RELINIGFI 1nar 171 :SSHYQKLYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=32218 # 1tfzA.137.36 read from T0547.t2k.many.frag # found chain 1tfzA in training set T0547 137 :RELINIGFI 1tfzA 37 :TNVARRFSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=32219 # 1ra0A.137.168 read from T0547.t2k.many.frag # found chain 1ra0A in training set T0547 137 :RELINIGFI 1ra0A 165 :GEALLEEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32220 # 1y88A.137.105 read from T0547.t2k.many.frag # found chain 1y88A in template set T0547 137 :RELINIGFI 1y88A 93 :SEEAKKYAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32221 # 1f3vA.137.131 read from T0547.t2k.many.frag # found chain 1f3vA in template set T0547 137 :RELINIGFI 1f3vA 132 :EERCLSCIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32222 # 2a1rA.137.49 read from T0547.t2k.many.frag # found chain 2a1rA in template set T0547 137 :RELINIGFI 2a1rA 50 :PEERYQKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32223 # 1sr9A.137.147 read from T0547.t2k.many.frag # found chain 1sr9A in template set T0547 137 :RELINIGFI 1sr9A 148 :PELIERTFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32224 # 2cvbA.137.83 read from T0547.t2k.many.frag # found chain 2cvbA in training set T0547 137 :RELINIGFI 2cvbA 84 :PEKMAAFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32225 # 1km4A.137.23 read from T0547.t2k.many.frag # found chain 1km4A in template set T0547 137 :RELINIGFI 1km4A 24 :RDDALRVTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32226 # 1izoA.137.89 read from T0547.t2k.many.frag # found chain 1izoA in template set T0547 137 :RELINIGFI 1izoA 90 :SAHIHRKML Number of specific fragments extracted= 1 number of extra gaps= 0 total=32227 # 1w77A.137.81 read from T0547.t2k.many.frag # found chain 1w77A in template set T0547 137 :RELINIGFI 1w77A 156 :ERQDSVYSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32228 # 1u9iA.137.79 read from T0547.t2k.many.frag # found chain 1u9iA in template set T0547 137 :RELINIGFI 1u9iA 80 :PQDIIKNAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32229 # 1sur.137.55 read from T0547.t2k.many.frag # found chain 1sur in template set T0547 137 :RELINIGFI 1sur 56 :QAAVSLHLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32230 # 1ru3A.137.140 read from T0547.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)G143 (1ru3A)Y147 because G (3-10) conformation "forbidden" or filtered. T0547 137 :RELINI 1ru3A 141 :DPVVRQ T0547 144 :FI 1ru3A 148 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32232 # 1dmgA.137.134 read from T0547.t2k.many.frag # found chain 1dmgA in training set T0547 137 :RELINIGFI 1dmgA 136 :TKSLKEILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32233 # 7odcA.138.116 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 138 :ELINIGFIA 7odcA 117 :VSQIKYAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32234 # 1efpB.138.68 read from T0547.t2k.many.frag # found chain 1efpB in template set T0547 138 :ELINIGFIA 1efpB 69 :AETLRTALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32235 # 1o4wA.138.100 read from T0547.t2k.many.frag # found chain 1o4wA in template set T0547 138 :ELINIGFIA 1o4wA 89 :PSLIEAAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32236 # 1izcA.138.106 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 138 :ELINIGFIA 1izcA 107 :EVSLSTALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32237 # 1ccwA.138.43 read from T0547.t2k.many.frag # found chain 1ccwA in training set T0547 138 :ELINIGFIA 1ccwA 44 :ELFIKAAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32238 # 1gsoA.138.55 read from T0547.t2k.many.frag # found chain 1gsoA in training set T0547 138 :ELINIGFIA 1gsoA 54 :PALLDFAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=32239 # 1wu7A.138.195 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 138 :ELINIGFIA 1wu7A 196 :EEFVDQLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32240 # 1r6wA.138.198 read from T0547.t2k.many.frag # found chain 1r6wA in training set T0547 138 :ELINIGFIA 1r6wA 197 :DDSRAFARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32241 # 1vkfA.138.72 read from T0547.t2k.many.frag # found chain 1vkfA in training set T0547 138 :ELINIGFIA 1vkfA 61 :EEAILFVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32242 # 1w8sA.138.43 read from T0547.t2k.many.frag # found chain 1w8sA in template set T0547 138 :ELINIGFIA 1w8sA 44 :EYILRLARD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32243 # 1wb9A.138.431 read from T0547.t2k.many.frag # found chain 1wb9A in template set T0547 138 :ELINIGFIA 1wb9A 432 :ELDEWRALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32244 # 1z0wA.138.135 read from T0547.t2k.many.frag # found chain 1z0wA in training set T0547 138 :ELINIGFIA 1z0wA 550 :TQKIEAAIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32245 # 1wo8A.138.13 read from T0547.t2k.many.frag # found chain 1wo8A in training set T0547 138 :ELINIGFIA 1wo8A 14 :DEMVAFCLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32246 # 1ra0A.138.169 read from T0547.t2k.many.frag # found chain 1ra0A in training set T0547 138 :ELINIGFIA 1ra0A 166 :EALLEEALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32247 # 1nar.138.171 read from T0547.t2k.many.frag # found chain 1nar in training set T0547 138 :ELINIGFIA 1nar 172 :SHYQKLYNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32248 1vr0A expands to /projects/compbio/data/pdb/1vr0.pdb.gz 1vr0A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vr0A.138.42 read from T0547.t2k.many.frag # adding 1vr0A to template set # found chain 1vr0A in template set T0547 138 :ELINIGFIA 1vr0A 31 :TSVITTALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=32249 # 1wehA.138.87 read from T0547.t2k.many.frag # found chain 1wehA in training set T0547 138 :ELINIGFIA 1wehA 88 :PQRIGRLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32250 # 1ekqA.138.29 read from T0547.t2k.many.frag # found chain 1ekqA in training set T0547 138 :ELINIGFIA 1ekqA 30 :NFTANGLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32251 # 2cvbA.138.84 read from T0547.t2k.many.frag # found chain 2cvbA in training set T0547 138 :ELINIGFIA 2cvbA 85 :EKMAAFAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32252 # 1pii.138.119 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 138 :ELINIGFIA 1pii 120 :PYQIYLARY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32253 # 1izoA.138.90 read from T0547.t2k.many.frag # found chain 1izoA in template set T0547 138 :ELINIGFIA 1izoA 91 :AHIHRKMLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32254 # 1sur.138.56 read from T0547.t2k.many.frag # found chain 1sur in template set T0547 138 :ELINIGFIA 1sur 57 :AAVSLHLVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=32255 # 1tfzA.138.37 read from T0547.t2k.many.frag # found chain 1tfzA in training set T0547 138 :ELINIGFIA 1tfzA 38 :NVARRFSWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32256 # 1y88A.138.106 read from T0547.t2k.many.frag # found chain 1y88A in template set T0547 138 :ELINIGFIA 1y88A 94 :EEAKKYAGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=32257 # 1vpqA.138.163 read from T0547.t2k.many.frag # found chain 1vpqA in template set T0547 138 :ELINIGFIA 1vpqA 152 :EETYEFLRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=32258 # 1f3vA.138.132 read from T0547.t2k.many.frag # found chain 1f3vA in template set T0547 138 :ELINIGFIA 1f3vA 133 :ERCLSCILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32259 # 1l0bA.138.134 read from T0547.t2k.many.frag # found chain 1l0bA in template set T0547 138 :ELINIGFIA 1l0bA 1723 :DELERMLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32260 # 2etxA.138.53 read from T0547.t2k.many.frag # found chain 2etxA in training set T0547 138 :ELINIGFIA 2etxA 1934 :TVKFLCALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32261 # 1u9iA.138.80 read from T0547.t2k.many.frag # found chain 1u9iA in template set T0547 138 :ELINIGFIA 1u9iA 81 :QDIIKNARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32262 # 1vflA.138.23 read from T0547.t2k.many.frag # found chain 1vflA in training set T0547 138 :ELINIGFIA 1vflA 22 :ETILYYGKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32263 # 7odcA.139.117 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 139 :LINIGFIAA 7odcA 118 :SQIKYAASN Number of specific fragments extracted= 1 number of extra gaps= 0 total=32264 # 1efpB.139.69 read from T0547.t2k.many.frag # found chain 1efpB in template set T0547 139 :LINIGFIAA 1efpB 70 :ETLRTALAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=32265 # 1o4wA.139.101 read from T0547.t2k.many.frag # found chain 1o4wA in template set T0547 139 :LINIGFIAA 1o4wA 90 :SLIEAAEKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32266 # 1izcA.139.107 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 139 :LINIGFIAA 1izcA 108 :VSLSTALDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32267 # 1gsoA.139.56 read from T0547.t2k.many.frag # found chain 1gsoA in training set T0547 139 :LINIGFIAA 1gsoA 55 :ALLDFAQNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32268 # 1ccwA.139.44 read from T0547.t2k.many.frag # found chain 1ccwA in training set T0547 139 :LINIGFIAA 1ccwA 45 :LFIKAAIET Number of specific fragments extracted= 1 number of extra gaps= 0 total=32269 # 1wu7A.139.196 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 139 :LINIGFIAA 1wu7A 197 :EFVDQLRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32270 # 1vkfA.139.73 read from T0547.t2k.many.frag # found chain 1vkfA in training set T0547 139 :LINIGFIAA 1vkfA 62 :EAILFVKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32271 # 1r6wA.139.199 read from T0547.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)A147 (1r6wA)T206 because G (3-10) conformation "forbidden" or filtered. T0547 139 :LINIGFIA 1r6wA 198 :DSRAFARE Number of specific fragments extracted= 1 number of extra gaps= 1 total=32272 # 1w8sA.139.44 read from T0547.t2k.many.frag # found chain 1w8sA in template set T0547 139 :LINIGFIAA 1w8sA 45 :YILRLARDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32273 # 1z0wA.139.136 read from T0547.t2k.many.frag # found chain 1z0wA in training set T0547 139 :LINIGFIAA 1z0wA 551 :QKIEAAIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32274 # 1ra0A.139.170 read from T0547.t2k.many.frag # found chain 1ra0A in training set T0547 139 :LINIGFIAA 1ra0A 167 :ALLEEALRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32275 # 1wb9A.139.432 read from T0547.t2k.many.frag # found chain 1wb9A in template set T0547 139 :LINIGFIAA 1wb9A 433 :LDEWRALAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32276 # 1vr0A.139.43 read from T0547.t2k.many.frag # found chain 1vr0A in template set T0547 139 :LINIGFIAA 1vr0A 32 :SVITTALNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=32277 # 1nar.139.172 read from T0547.t2k.many.frag # found chain 1nar in training set T0547 139 :LINIGFIAA 1nar 173 :HYQKLYNAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32278 # 1wo8A.139.14 read from T0547.t2k.many.frag # found chain 1wo8A in training set T0547 139 :LINIGFIAA 1wo8A 15 :EMVAFCLRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=32279 # 2cvbA.139.85 read from T0547.t2k.many.frag # found chain 2cvbA in training set T0547 139 :LINIGFIAA 2cvbA 86 :KMAAFAEEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=32280 # 1ekqA.139.30 read from T0547.t2k.many.frag # found chain 1ekqA in training set Warning: unaligning (T0547)G143 (1ekqA)G35 because H (helix) conformation "forbidden" or filtered. T0547 139 :LINI 1ekqA 31 :FTAN T0547 144 :FIAA 1ekqA 36 :LLAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32282 # 1pii.139.120 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 139 :LINIGFIAA 1pii 121 :YQIYLARYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32283 # 2etxA.139.54 read from T0547.t2k.many.frag # found chain 2etxA in training set T0547 139 :LINIGFIAA 2etxA 1935 :VKFLCALGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32284 # 1sur.139.57 read from T0547.t2k.many.frag # found chain 1sur in template set T0547 139 :LINIGFIAA 1sur 58 :AVSLHLVNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32285 # 1vpqA.139.164 read from T0547.t2k.many.frag # found chain 1vpqA in template set T0547 139 :LINIGFIAA 1vpqA 153 :ETYEFLRNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=32286 # 1vhyA.139.95 read from T0547.t2k.many.frag # found chain 1vhyA in template set T0547 139 :LINIGFIAA 1vhyA 94 :FTIQKSVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32287 # 1tfzA.139.38 read from T0547.t2k.many.frag # found chain 1tfzA in training set T0547 139 :LINIGFIAA 1tfzA 39 :VARRFSWGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32288 # 1wehA.139.88 read from T0547.t2k.many.frag # found chain 1wehA in training set T0547 139 :LINIGFIAA 1wehA 89 :QRIGRLLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32289 # 1izoA.139.91 read from T0547.t2k.many.frag # found chain 1izoA in template set T0547 139 :LINIGFIAA 1izoA 92 :HIHRKMLFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32290 # 1l0bA.139.135 read from T0547.t2k.many.frag # found chain 1l0bA in template set T0547 139 :LINIGFIAA 1l0bA 1724 :ELERMLQLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=32291 # 1es9A.139.77 read from T0547.t2k.many.frag # found chain 1es9A in training set Warning: unaligning (T0547)A147 because of BadResidue code BAD_PEPTIDE in next template residue (1es9A)G87 T0547 139 :LINIGFIA 1es9A 78 :QHVLWRLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=32292 # 1vflA.139.24 read from T0547.t2k.many.frag # found chain 1vflA in training set T0547 139 :LINIGFIAA 1vflA 23 :TILYYGKRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32293 # 1y88A.139.107 read from T0547.t2k.many.frag # found chain 1y88A in template set T0547 139 :LINIGFIAA 1y88A 95 :EAKKYAGCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32294 # 7odcA.140.118 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E148 (7odcA)G127 because T (delta_L) conformation "forbidden" or filtered. T0547 140 :INIGFIAA 7odcA 119 :QIKYAASN Number of specific fragments extracted= 1 number of extra gaps= 1 total=32295 # 1efpB.140.70 read from T0547.t2k.many.frag # found chain 1efpB in template set Warning: unaligning (T0547)E148 (1efpB)G79 because T (delta_L) conformation "forbidden" or filtered. T0547 140 :INIGFIAA 1efpB 71 :TLRTALAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=32296 # 1izcA.140.108 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 140 :INIGFIAAE 1izcA 109 :SLSTALDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32297 # 1o4wA.140.102 read from T0547.t2k.many.frag # found chain 1o4wA in template set T0547 140 :INIGFIAAE 1o4wA 91 :LIEAAEKYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32298 # 1ccwA.140.45 read from T0547.t2k.many.frag # found chain 1ccwA in training set Warning: unaligning (T0547)A147 (1ccwA)T53 because G (3-10) conformation "forbidden" or filtered. T0547 140 :INIGFIA 1ccwA 46 :FIKAAIE T0547 148 :E 1ccwA 54 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=32300 # 1gsoA.140.57 read from T0547.t2k.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)E148 (1gsoA)K64 because L (left) conformation "forbidden" or filtered. T0547 140 :INIGFIAA 1gsoA 56 :LLDFAQNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=32301 # 1wu7A.140.197 read from T0547.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)E148 (1wu7A)G206 because L (left) conformation "forbidden" or filtered. T0547 140 :INIGFIAA 1wu7A 198 :FVDQLRSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=32302 # 1vkfA.140.74 read from T0547.t2k.many.frag # found chain 1vkfA in training set Warning: unaligning (T0547)E148 (1vkfA)G71 because T (delta_L) conformation "forbidden" or filtered. T0547 140 :INIGFIAA 1vkfA 63 :AILFVKKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=32303 # 1z0wA.140.137 read from T0547.t2k.many.frag # found chain 1z0wA in training set Warning: unaligning (T0547)E148 (1z0wA)G560 because T (delta_L) conformation "forbidden" or filtered. T0547 140 :INIGFIAA 1z0wA 552 :KIEAAIQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=32304 # 1w8sA.140.45 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)E148 (1w8sA)G54 because L (left) conformation "forbidden" or filtered. T0547 140 :INIGFIAA 1w8sA 46 :ILRLARDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=32305 # 1r6wA.140.200 read from T0547.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)E148 (1r6wA)G207 because T (delta_L) conformation "forbidden" or filtered. T0547 140 :INIGFIAA 1r6wA 199 :SRAFARET Number of specific fragments extracted= 1 number of extra gaps= 1 total=32306 # 1vr0A.140.44 read from T0547.t2k.many.frag # found chain 1vr0A in template set Warning: unaligning (T0547)E148 (1vr0A)G41 because T (delta_L) conformation "forbidden" or filtered. T0547 140 :INIGFIAA 1vr0A 33 :VITTALNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=32307 # 1ra0A.140.171 read from T0547.t2k.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)E148 (1ra0A)G176 because T (delta_L) conformation "forbidden" or filtered. T0547 140 :INIGFIAA 1ra0A 168 :LLEEALRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=32308 # 2cvbA.140.86 read from T0547.t2k.many.frag # found chain 2cvbA in training set T0547 140 :INIGFIAAE 2cvbA 87 :MAAFAEEHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32309 # 1wb9A.140.433 read from T0547.t2k.many.frag # found chain 1wb9A in template set T0547 140 :INIGFIAAE 1wb9A 434 :DEWRALADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32310 # 1vhyA.140.96 read from T0547.t2k.many.frag # found chain 1vhyA in template set T0547 140 :INIGFIAAE 1vhyA 95 :TIQKSVELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32311 # 1nar.140.173 read from T0547.t2k.many.frag # found chain 1nar in training set T0547 140 :INIGFIAAE 1nar 174 :YQKLYNAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32312 # 1es9A.140.78 read from T0547.t2k.many.frag # found chain 1es9A in training set Warning: unaligning (T0547)A147 because of BadResidue code BAD_PEPTIDE in next template residue (1es9A)G87 Warning: unaligning (T0547)E148 because of BadResidue code BAD_PEPTIDE at template residue (1es9A)G87 T0547 140 :INIGFIA 1es9A 79 :HVLWRLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=32313 # 1e0tA.140.176 read from T0547.t2k.many.frag # found chain 1e0tA in template set T0547 140 :INIGFIAAE 1e0tA 177 :DLIFGCEQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32314 # 1ekqA.140.31 read from T0547.t2k.many.frag # found chain 1ekqA in training set T0547 140 :INIGFIAAE 1ekqA 32 :TANGLLALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32315 1wwpA expands to /projects/compbio/data/pdb/1wwp.pdb.gz 1wwpA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wwpA.140.58 read from T0547.t2k.many.frag # adding 1wwpA to template set # found chain 1wwpA in template set Warning: unaligning (T0547)E148 (1wwpA)G67 because T (delta_L) conformation "forbidden" or filtered. T0547 140 :INIGFIAA 1wwpA 59 :VIRLAREV Number of specific fragments extracted= 1 number of extra gaps= 1 total=32316 # 2etxA.140.55 read from T0547.t2k.many.frag # found chain 2etxA in training set T0547 140 :INIGFIAAE 2etxA 1936 :KFLCALGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32317 # 1k3yA.140.17 read from T0547.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0547)E148 (1k3yA)G27 because T (delta_L) conformation "forbidden" or filtered. T0547 140 :INIGFIAA 1k3yA 19 :TRWLLAAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=32318 # 1sur.140.58 read from T0547.t2k.many.frag # found chain 1sur in template set T0547 140 :INIGFIAAE 1sur 59 :VSLHLVNQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32319 # 1vpqA.140.165 read from T0547.t2k.many.frag # found chain 1vpqA in template set Warning: unaligning (T0547)E148 (1vpqA)G162 because L (left) conformation "forbidden" or filtered. T0547 140 :INIGFIAA 1vpqA 154 :TYEFLRNH Number of specific fragments extracted= 1 number of extra gaps= 1 total=32320 # 1pii.140.121 read from T0547.t2k.many.frag # found chain 1pii in template set Warning: unaligning (T0547)A147 (1pii)Y129 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E148 (1pii)Q130 because T (delta_L) conformation "forbidden" or filtered. T0547 140 :INIGFIA 1pii 122 :QIYLARY Number of specific fragments extracted= 1 number of extra gaps= 1 total=32321 # 1y88A.140.108 read from T0547.t2k.many.frag # found chain 1y88A in template set T0547 140 :INIGFIAAE 1y88A 96 :AKKYAGCVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32322 # 1i60A.140.18 read from T0547.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)E148 (1i60A)G27 because L (left) conformation "forbidden" or filtered. T0547 140 :INIGFIAA 1i60A 19 :DLELCEKH Number of specific fragments extracted= 1 number of extra gaps= 1 total=32323 # 1eyeA.140.91 read from T0547.t2k.many.frag # found chain 1eyeA in template set T0547 140 :INIGFIAAE 1eyeA 92 :VARAALQNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32324 # 1tfzA.140.39 read from T0547.t2k.many.frag # found chain 1tfzA in training set T0547 140 :INIGFIAAE 1tfzA 40 :ARRFSWGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32325 # 7odcA.141.119 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 141 :NIGFIAAEM 7odcA 120 :IKYAASNGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32326 # 1efpB.141.71 read from T0547.t2k.many.frag # found chain 1efpB in template set T0547 141 :NIGFIAAEM 1efpB 72 :LRTALAMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32327 # 1o4wA.141.103 read from T0547.t2k.many.frag # found chain 1o4wA in template set T0547 141 :NIGFIAAEM 1o4wA 92 :IEAAEKYGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=32328 # 1izcA.141.109 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 141 :NIGFIAAEM 1izcA 110 :LSTALDAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32329 # 1gsoA.141.58 read from T0547.t2k.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)E148 (1gsoA)K64 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M149 (1gsoA)I65 because P (beta_P) conformation "forbidden" or filtered. T0547 141 :NIGFIAA 1gsoA 57 :LDFAQNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=32330 # 1ccwA.141.46 read from T0547.t2k.many.frag # found chain 1ccwA in training set Warning: unaligning (T0547)E148 (1ccwA)K54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M149 because of BadResidue code BAD_PEPTIDE in next template residue (1ccwA)D56 T0547 141 :NIGFIAA 1ccwA 47 :IKAAIET Number of specific fragments extracted= 1 number of extra gaps= 1 total=32331 # 1wu7A.141.198 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 141 :NIGFIAAEM 1wu7A 199 :VDQLRSAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32332 # 1z0wA.141.138 read from T0547.t2k.many.frag # found chain 1z0wA in training set T0547 141 :NIGFIAAEM 1z0wA 553 :IEAAIQAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32333 # 1vr0A.141.45 read from T0547.t2k.many.frag # found chain 1vr0A in template set Warning: unaligning (T0547)E148 (1vr0A)G41 because T (delta_L) conformation "forbidden" or filtered. T0547 141 :NIGFIAA 1vr0A 34 :ITTALNN T0547 149 :M 1vr0A 42 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=32335 # 1vkfA.141.75 read from T0547.t2k.many.frag # found chain 1vkfA in training set T0547 141 :NIGFIAAEM 1vkfA 64 :ILFVKKAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32336 # 1w8sA.141.46 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)E148 (1w8sA)G54 because L (left) conformation "forbidden" or filtered. T0547 141 :NIGFIAA 1w8sA 47 :LRLARDA T0547 149 :M 1w8sA 55 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=32338 # 1ra0A.141.172 read from T0547.t2k.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)E148 (1ra0A)G176 because T (delta_L) conformation "forbidden" or filtered. T0547 141 :NIGFIAA 1ra0A 169 :LEEALRL T0547 149 :M 1ra0A 177 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=32340 # 1r6wA.141.201 read from T0547.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)A147 (1r6wA)T206 because G (3-10) conformation "forbidden" or filtered. T0547 141 :NIGFIA 1r6wA 200 :RAFARE T0547 148 :EM 1r6wA 207 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32342 # 2cvbA.141.87 read from T0547.t2k.many.frag # found chain 2cvbA in training set T0547 141 :NIGFIAAEM 2cvbA 88 :AAFAEEHGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32343 # 1vhyA.141.97 read from T0547.t2k.many.frag # found chain 1vhyA in template set T0547 141 :NIGFIAAEM 1vhyA 96 :IQKSVELGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32344 # 1es9A.141.79 read from T0547.t2k.many.frag # found chain 1es9A in training set Warning: unaligning (T0547)A147 because of BadResidue code BAD_PEPTIDE in next template residue (1es9A)G87 Warning: unaligning (T0547)E148 because of BadResidue code BAD_PEPTIDE at template residue (1es9A)G87 T0547 141 :NIGFIA 1es9A 80 :VLWRLE T0547 149 :M 1es9A 88 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=32346 # 1e0tA.141.177 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)M149 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)D187 T0547 141 :NIGFIAAE 1e0tA 178 :LIFGCEQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=32347 # 1eyeA.141.92 read from T0547.t2k.many.frag # found chain 1eyeA in template set Warning: unaligning (T0547)A147 (1eyeA)N99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E148 (1eyeA)G100 because T (delta_L) conformation "forbidden" or filtered. T0547 141 :NIGFIA 1eyeA 93 :ARAALQ T0547 149 :M 1eyeA 101 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=32349 # 1wb9A.141.434 read from T0547.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0547)A147 (1wb9A)D441 because G (3-10) conformation "forbidden" or filtered. T0547 141 :NIGFIA 1wb9A 435 :EWRALA T0547 148 :EM 1wb9A 442 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32351 # 1k3yA.141.18 read from T0547.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0547)E148 (1k3yA)G27 because T (delta_L) conformation "forbidden" or filtered. T0547 141 :NIGFIAA 1k3yA 20 :RWLLAAA T0547 149 :M 1k3yA 28 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=32353 # 1sur.141.59 read from T0547.t2k.many.frag # found chain 1sur in template set T0547 141 :NIGFIAAEM 1sur 60 :SLHLVNQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32354 # 1nar.141.174 read from T0547.t2k.many.frag # found chain 1nar in training set T0547 141 :NIGFIAAEM 1nar 175 :QKLYNAKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32355 1rcwA expands to /projects/compbio/data/pdb/1rcw.pdb.gz 1rcwA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1rcwA.141.92 read from T0547.t2k.many.frag # adding 1rcwA to template set # found chain 1rcwA in template set T0547 141 :NIGFIAAEM 1rcwA 93 :KQFVFALGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32356 # 1vpqA.141.166 read from T0547.t2k.many.frag # found chain 1vpqA in template set T0547 141 :NIGFIAAEM 1vpqA 155 :YEFLRNHGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32357 # 1ekqA.141.32 read from T0547.t2k.many.frag # found chain 1ekqA in training set T0547 141 :NIGFIAAEM 1ekqA 33 :ANGLLALGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32358 # 1m65A.141.23 read from T0547.t2k.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)E148 (1m65A)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 141 :NIGFIAA 1m65A 24 :IAQAKQK T0547 149 :M 1m65A 32 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=32360 # 1y88A.141.109 read from T0547.t2k.many.frag # found chain 1y88A in template set Warning: unaligning (T0547)E148 (1y88A)G104 because T (delta_L) conformation "forbidden" or filtered. T0547 141 :NIGFIAA 1y88A 97 :KKYAGCV T0547 149 :M 1y88A 105 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=32362 # 1i60A.141.19 read from T0547.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)A147 (1i60A)H26 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E148 (1i60A)G27 because L (left) conformation "forbidden" or filtered. T0547 141 :NIGFIA 1i60A 20 :LELCEK T0547 149 :M 1i60A 28 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=32364 2c0nA expands to /projects/compbio/data/pdb/2c0n.pdb.gz 2c0nA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2c0nA.141.17 read from T0547.t2k.many.frag # adding 2c0nA to template set # found chain 2c0nA in template set T0547 141 :NIGFIAAEM 2c0nA 18 :IDFLVKNDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32365 # 1hd2A.141.81 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)E148 (1hd2A)K89 because L (left) conformation "forbidden" or filtered. T0547 141 :NIGFIAA 1hd2A 82 :GEWGRAH T0547 149 :M 1hd2A 90 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=32367 # 7odcA.142.120 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E148 (7odcA)G127 because T (delta_L) conformation "forbidden" or filtered. T0547 142 :IGFIAA 7odcA 121 :KYAASN T0547 149 :MG 7odcA 128 :VQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=32369 # 1wu7A.142.199 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 142 :IGFIAAEMG 1wu7A 200 :DQLRSAGIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32370 # 1gsoA.142.59 read from T0547.t2k.many.frag # found chain 1gsoA in training set T0547 142 :IGFIAAEMG 1gsoA 58 :DFAQNEKID Number of specific fragments extracted= 1 number of extra gaps= 0 total=32371 # 1efpB.142.72 read from T0547.t2k.many.frag # found chain 1efpB in template set T0547 142 :IGFIAAEMG 1efpB 73 :RTALAMGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32372 # 1izcA.142.110 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 142 :IGFIAAEMG 1izcA 111 :STALDAGAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32373 # 1vkfA.142.76 read from T0547.t2k.many.frag # found chain 1vkfA in training set T0547 142 :IGFIAAEMG 1vkfA 65 :LFVKKAGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32374 # 1z0wA.142.139 read from T0547.t2k.many.frag # found chain 1z0wA in training set Warning: unaligning (T0547)M149 (1z0wA)L561 because P (beta_P) conformation "forbidden" or filtered. T0547 142 :IGFIAAE 1z0wA 554 :EAAIQAG T0547 150 :G 1z0wA 562 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=32376 # 1vr0A.142.46 read from T0547.t2k.many.frag # found chain 1vr0A in template set T0547 142 :IGFIAAEMG 1vr0A 35 :TTALNNGCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32377 # 2cvbA.142.88 read from T0547.t2k.many.frag # found chain 2cvbA in training set T0547 142 :IGFIAAEMG 2cvbA 89 :AFAEEHGIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32378 # 1ccwA.142.47 read from T0547.t2k.many.frag # found chain 1ccwA in training set Warning: unaligning (T0547)M149 because of BadResidue code BAD_PEPTIDE in next template residue (1ccwA)D56 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE at template residue (1ccwA)D56 T0547 142 :IGFIAAE 1ccwA 48 :KAAIETK Number of specific fragments extracted= 1 number of extra gaps= 1 total=32379 # 1ra0A.142.173 read from T0547.t2k.many.frag # found chain 1ra0A in training set T0547 142 :IGFIAAEMG 1ra0A 170 :EEALRLGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32380 # 1o4wA.142.104 read from T0547.t2k.many.frag # found chain 1o4wA in template set Warning: unaligning (T0547)E148 (1o4wA)G99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G150 (1o4wA)I101 because P (beta_P) conformation "forbidden" or filtered. T0547 142 :IGFIAA 1o4wA 93 :EAAEKY T0547 149 :M 1o4wA 100 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=32382 # 1w8sA.142.47 read from T0547.t2k.many.frag # found chain 1w8sA in template set T0547 142 :IGFIAAEMG 1w8sA 48 :RLARDAGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32383 # 1vhyA.142.98 read from T0547.t2k.many.frag # found chain 1vhyA in template set Warning: unaligning (T0547)E148 (1vhyA)G103 because T (delta_L) conformation "forbidden" or filtered. T0547 142 :IGFIAA 1vhyA 97 :QKSVEL T0547 149 :MG 1vhyA 104 :VN Number of specific fragments extracted= 2 number of extra gaps= 1 total=32385 # 1e0tA.142.178 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)E148 (1e0tA)G185 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M149 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)D187 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)D187 T0547 142 :IGFIAA 1e0tA 179 :IFGCEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=32386 # 1k3yA.142.19 read from T0547.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0547)M149 (1k3yA)V28 because P (beta_P) conformation "forbidden" or filtered. T0547 142 :IGFIAAE 1k3yA 21 :WLLAAAG T0547 150 :G 1k3yA 29 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=32388 # 1es9A.142.80 read from T0547.t2k.many.frag # found chain 1es9A in training set Warning: unaligning (T0547)A147 because of BadResidue code BAD_PEPTIDE in next template residue (1es9A)G87 Warning: unaligning (T0547)E148 because of BadResidue code BAD_PEPTIDE at template residue (1es9A)G87 T0547 142 :IGFIA 1es9A 81 :LWRLE T0547 149 :MG 1es9A 88 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32390 # 1thfD.142.89 read from T0547.t2k.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)E148 (1thfD)G96 because T (delta_L) conformation "forbidden" or filtered. T0547 142 :IGFIAA 1thfD 90 :SELILR T0547 149 :MG 1thfD 97 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=32392 # 1eyeA.142.93 read from T0547.t2k.many.frag # found chain 1eyeA in template set T0547 142 :IGFIAAEMG 1eyeA 94 :RAALQNGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32393 # 1vpqA.142.167 read from T0547.t2k.many.frag # found chain 1vpqA in template set Warning: unaligning (T0547)E148 (1vpqA)G162 because L (left) conformation "forbidden" or filtered. T0547 142 :IGFIAA 1vpqA 156 :EFLRNH T0547 149 :MG 1vpqA 163 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=32395 # 1m65A.142.24 read from T0547.t2k.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)E148 (1m65A)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)M149 (1m65A)I32 because P (beta_P) conformation "forbidden" or filtered. T0547 142 :IGFIAA 1m65A 25 :AQAKQK T0547 150 :G 1m65A 33 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=32397 # 1rcwA.142.93 read from T0547.t2k.many.frag # found chain 1rcwA in template set Warning: unaligning (T0547)E148 (1rcwA)G100 because T (delta_L) conformation "forbidden" or filtered. T0547 142 :IGFIAA 1rcwA 94 :QFVFAL T0547 149 :MG 1rcwA 101 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=32399 # 2c0nA.142.18 read from T0547.t2k.many.frag # found chain 2c0nA in template set Warning: unaligning (T0547)E148 (2c0nA)D25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G150 (2c0nA)E27 because P (beta_P) conformation "forbidden" or filtered. T0547 142 :IGFIAA 2c0nA 19 :DFLVKN T0547 149 :M 2c0nA 26 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=32401 # 1r6wA.142.202 read from T0547.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)E148 (1r6wA)G207 because T (delta_L) conformation "forbidden" or filtered. T0547 142 :IGFIAA 1r6wA 201 :AFARET T0547 149 :MG 1r6wA 208 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32403 # 1nar.142.175 read from T0547.t2k.many.frag # found chain 1nar in training set T0547 142 :IGFIAAEMG 1nar 176 :KLYNAKKDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32404 1pea expands to /projects/compbio/data/pdb/1pea.pdb.gz 1pea:Warning: there is no chain 1pea will retry with 1peaA # 1pea.142.131 read from T0547.t2k.many.frag # adding 1pea to template set # found chain 1pea in template set T0547 142 :IGFIAAEMG 1pea 132 :AAYLIRHYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32405 # 1sur.142.60 read from T0547.t2k.many.frag # found chain 1sur in template set T0547 142 :IGFIAAEMG 1sur 61 :LHLVNQIRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=32406 # 1hd2A.142.82 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)E148 (1hd2A)K89 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G150 (1hd2A)E91 because P (beta_P) conformation "forbidden" or filtered. T0547 142 :IGFIAA 1hd2A 83 :EWGRAH T0547 149 :M 1hd2A 90 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=32408 # 1ekqA.142.33 read from T0547.t2k.many.frag # found chain 1ekqA in training set Warning: unaligning (T0547)E148 (1ekqA)G40 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)M149 (1ekqA)A41 because P (beta_P) conformation "forbidden" or filtered. T0547 142 :IGFIAA 1ekqA 34 :NGLLAL T0547 150 :G 1ekqA 42 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=32410 # 1nrzA.142.19 read from T0547.t2k.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)E148 (1nrzA)N27 because L (left) conformation "forbidden" or filtered. T0547 142 :IGFIAA 1nrzA 21 :VWSKVA T0547 149 :MG 1nrzA 28 :AQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=32412 # 2cvbA.143.89 read from T0547.t2k.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)E148 (2cvbA)G95 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (2cvbA)F98 because P (beta_P) conformation "forbidden" or filtered. T0547 143 :GFIAA 2cvbA 90 :FAEEH T0547 149 :MG 2cvbA 96 :IF Number of specific fragments extracted= 2 number of extra gaps= 2 total=32414 # 7odcA.143.121 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 143 :GFIAAEMGH 7odcA 122 :YAASNGVQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=32415 # 1efpB.143.73 read from T0547.t2k.many.frag # found chain 1efpB in template set Warning: unaligning (T0547)H151 (1efpB)R82 because Y (epsilon') conformation "forbidden" or filtered. T0547 143 :GFIAAEMG 1efpB 74 :TALAMGAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=32416 # 1wu7A.143.200 read from T0547.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)E148 (1wu7A)G206 because L (left) conformation "forbidden" or filtered. T0547 143 :GFIAA 1wu7A 201 :QLRSA T0547 149 :MGH 1wu7A 207 :IGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32418 # 1gsoA.143.60 read from T0547.t2k.many.frag # found chain 1gsoA in training set T0547 143 :GFIAAEMGH 1gsoA 59 :FAQNEKIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32419 # 1vkfA.143.77 read from T0547.t2k.many.frag # found chain 1vkfA in training set T0547 143 :GFIAAEMGH 1vkfA 66 :FVKKAGADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32420 # 1vr0A.143.47 read from T0547.t2k.many.frag # found chain 1vr0A in template set Warning: unaligning (T0547)E148 (1vr0A)G41 because T (delta_L) conformation "forbidden" or filtered. T0547 143 :GFIAA 1vr0A 36 :TALNN T0547 149 :MGH 1vr0A 42 :CKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32422 # 1k3yA.143.20 read from T0547.t2k.many.frag # found chain 1k3yA in training set T0547 143 :GFIAAEMGH 1k3yA 22 :LLAAAGVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32423 # 1nvmB.143.20 read from T0547.t2k.many.frag # found chain 1nvmB in training set T0547 143 :GFIAAEMGH 1nvmB 21 :IKVLRNAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32424 # 1pea.143.132 read from T0547.t2k.many.frag # found chain 1pea in template set T0547 143 :GFIAAEMGH 1pea 133 :AYLIRHYGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32425 # 1vhyA.143.99 read from T0547.t2k.many.frag # found chain 1vhyA in template set Warning: unaligning (T0547)E148 (1vhyA)G103 because T (delta_L) conformation "forbidden" or filtered. T0547 143 :GFIAA 1vhyA 98 :KSVEL T0547 149 :MGH 1vhyA 104 :VNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32427 # 1hd2A.143.83 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)E148 (1hd2A)K89 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G150 (1hd2A)E91 because P (beta_P) conformation "forbidden" or filtered. T0547 143 :GFIAA 1hd2A 84 :WGRAH T0547 149 :M 1hd2A 90 :A T0547 151 :H 1hd2A 92 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=32430 # 1izcA.143.111 read from T0547.t2k.many.frag # found chain 1izcA in training set Warning: unaligning (T0547)G150 (1izcA)A119 because G (3-10) conformation "forbidden" or filtered. T0547 143 :GFIAAEM 1izcA 112 :TALDAGA T0547 151 :H 1izcA 120 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=32432 # 1w8sA.143.48 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)H151 (1w8sA)G57 because Y (epsilon') conformation "forbidden" or filtered. T0547 143 :GFIAAEMG 1w8sA 49 :LARDAGFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=32433 # 1rkxA.143.25 read from T0547.t2k.many.frag # found chain 1rkxA in template set T0547 143 :GFIAAEMGH 1rkxA 26 :SLWLQTMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32434 # 1z0wA.143.140 read from T0547.t2k.many.frag # found chain 1z0wA in training set Warning: unaligning (T0547)E148 (1z0wA)G560 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)M149 (1z0wA)L561 because P (beta_P) conformation "forbidden" or filtered. T0547 143 :GFIAA 1z0wA 555 :AAIQA T0547 150 :GH 1z0wA 562 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32436 # 2c0nA.143.19 read from T0547.t2k.many.frag # found chain 2c0nA in template set Warning: unaligning (T0547)H151 (2c0nA)Y28 because Y (epsilon') conformation "forbidden" or filtered. T0547 143 :GFIAAEMG 2c0nA 20 :FLVKNDIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=32437 # 1nar.143.176 read from T0547.t2k.many.frag # found chain 1nar in training set Warning: unaligning (T0547)G150 (1nar)Y184 because G (3-10) conformation "forbidden" or filtered. T0547 143 :GFIAAEM 1nar 177 :LYNAKKD T0547 151 :H 1nar 185 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=32439 # 1tuoA.143.195 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)E148 (1tuoA)G201 because L (left) conformation "forbidden" or filtered. T0547 143 :GFIAA 1tuoA 196 :FLRHV T0547 149 :MGH 1tuoA 202 :LEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32441 # 1t0fA.143.95 read from T0547.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)E148 (1t0fA)G98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (1t0fA)H101 because P (beta_P) conformation "forbidden" or filtered. T0547 143 :GFIAA 1t0fA 93 :IAIDS T0547 149 :MG 1t0fA 99 :IK Number of specific fragments extracted= 2 number of extra gaps= 2 total=32443 # 1ccwA.143.48 read from T0547.t2k.many.frag # found chain 1ccwA in training set Warning: unaligning (T0547)E148 (1ccwA)K54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M149 because of BadResidue code BAD_PEPTIDE in next template residue (1ccwA)D56 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE at template residue (1ccwA)D56 Warning: unaligning (T0547)H151 (1ccwA)A57 because Y (epsilon') conformation "forbidden" or filtered. T0547 143 :GFIAA 1ccwA 49 :AAIET Number of specific fragments extracted= 1 number of extra gaps= 1 total=32444 1j9lA expands to /projects/compbio/data/pdb/1j9l.pdb.gz 1j9lA:# 1j9lA.143.18 read from T0547.t2k.many.frag # adding 1j9lA to template set # found chain 1j9lA in template set T0547 143 :GFIAAEMGH 1j9lA 19 :LAELLSEEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=32445 # 1k92A.143.26 read from T0547.t2k.many.frag # found chain 1k92A in training set Warning: unaligning (T0547)H151 (1k92A)A35 because P (beta_P) conformation "forbidden" or filtered. T0547 143 :GFIAAEMG 1k92A 27 :LLWMRQKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=32446 # 1i24A.143.27 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 143 :GFIAAEMGH 1i24A 18 :ALHLSKKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32447 # 1m65A.143.25 read from T0547.t2k.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)G150 (1m65A)K33 because G (3-10) conformation "forbidden" or filtered. T0547 143 :GFIAAEM 1m65A 26 :QAKQKGI T0547 151 :H 1m65A 34 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=32449 # 1ra0A.143.174 read from T0547.t2k.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)E148 (1ra0A)G176 because T (delta_L) conformation "forbidden" or filtered. T0547 143 :GFIAA 1ra0A 171 :EALRL T0547 149 :MGH 1ra0A 177 :ADV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32451 # 1wbhA.143.82 read from T0547.t2k.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)G150 (1wbhA)Q89 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (1wbhA)F90 because Y (epsilon') conformation "forbidden" or filtered. T0547 143 :GFIAAEM 1wbhA 82 :EVTEAGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=32452 # 1sur.143.61 read from T0547.t2k.many.frag # found chain 1sur in template set Warning: unaligning (T0547)G150 (1sur)P69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (1sur)D70 because L (left) conformation "forbidden" or filtered. T0547 143 :GFIAAEM 1sur 62 :HLVNQIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=32453 1xdpA expands to /projects/compbio/data/pdb/1xdp.pdb.gz 1xdpA:# 1xdpA.143.384 read from T0547.t2k.many.frag # adding 1xdpA to template set # found chain 1xdpA in template set T0547 143 :GFIAAEMGH 1xdpA 386 :MIHAAHNGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32454 # 1e0tA.143.179 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)E148 (1e0tA)G185 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M149 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)D187 Warning: unaligning (T0547)G150 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)D187 T0547 143 :GFIAA 1e0tA 180 :FGCEQ T0547 151 :H 1e0tA 188 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=32456 # 2cvbA.144.90 read from T0547.t2k.many.frag # found chain 2cvbA in training set T0547 144 :FIAAEMGHN 2cvbA 91 :AEEHGIFFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=32457 # 1rkxA.144.26 read from T0547.t2k.many.frag # found chain 1rkxA in template set T0547 144 :FIAAEMGHN 1rkxA 27 :LWLQTMGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32458 # 1efpB.144.74 read from T0547.t2k.many.frag # found chain 1efpB in template set Warning: unaligning (T0547)H151 (1efpB)R82 because Y (epsilon') conformation "forbidden" or filtered. T0547 144 :FIAAEMG 1efpB 75 :ALAMGAD T0547 152 :N 1efpB 83 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=32460 # 1k3yA.144.21 read from T0547.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0547)M149 (1k3yA)V28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G150 (1k3yA)E29 because P (beta_P) conformation "forbidden" or filtered. T0547 144 :FIAAE 1k3yA 23 :LAAAG T0547 151 :HN 1k3yA 30 :FE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32462 # 1pea.144.133 read from T0547.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0547)N152 (1pea)R142 because P (beta_P) conformation "forbidden" or filtered. T0547 144 :FIAAEMGH 1pea 134 :YLIRHYGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=32463 # 1nvmB.144.21 read from T0547.t2k.many.frag # found chain 1nvmB in training set T0547 144 :FIAAEMGHN 1nvmB 22 :KVLRNAKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32464 # 1k92A.144.27 read from T0547.t2k.many.frag # found chain 1k92A in training set Warning: unaligning (T0547)M149 (1k92A)K33 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (1k92A)A35 because P (beta_P) conformation "forbidden" or filtered. T0547 144 :FIAAE 1k92A 28 :LWMRQ T0547 150 :G 1k92A 34 :G T0547 152 :N 1k92A 36 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=32467 # 1i24A.144.28 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 144 :FIAAEMGHN 1i24A 19 :LHLSKKNYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32468 1j0dA expands to /projects/compbio/data/pdb/1j0d.pdb.gz 1j0dA:# 1j0dA.144.85 read from T0547.t2k.many.frag # adding 1j0dA to template set # found chain 1j0dA in template set Warning: unaligning (T0547)N152 (1j0dA)K94 because P (beta_P) conformation "forbidden" or filtered. T0547 144 :FIAAEMGH 1j0dA 86 :ALAAKLGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=32469 # 1l0bA.144.24 read from T0547.t2k.many.frag # found chain 1l0bA in template set T0547 144 :FIAAEMGHN 1l0bA 1613 :KFAEKYRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32470 # 1xdpA.144.385 read from T0547.t2k.many.frag # found chain 1xdpA in template set T0547 144 :FIAAEMGHN 1xdpA 387 :IHAAHNGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32471 # 1woqA.144.108 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)H151 (1woqA)R116 because Y (epsilon') conformation "forbidden" or filtered. T0547 144 :FIAAEMG 1woqA 109 :LLTARLG T0547 152 :N 1woqA 117 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=32473 # 1jayA.144.17 read from T0547.t2k.many.frag # found chain 1jayA in training set T0547 144 :FIAAEMGHN 1jayA 18 :LRLATLGHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32474 # 1hd2A.144.84 read from T0547.t2k.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)H151 (1hd2A)G92 because T (delta_L) conformation "forbidden" or filtered. T0547 144 :FIAAEMG 1hd2A 85 :GRAHKAE T0547 152 :N 1hd2A 93 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=32476 # 1qopB.144.119 read from T0547.t2k.many.frag # found chain 1qopB in training set T0547 144 :FIAAEMGHN 1qopB 121 :LASALLGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32477 # 1nar.144.177 read from T0547.t2k.many.frag # found chain 1nar in training set Warning: unaligning (T0547)G150 (1nar)Y184 because G (3-10) conformation "forbidden" or filtered. T0547 144 :FIAAEM 1nar 178 :YNAKKD T0547 151 :HN 1nar 185 :IN Number of specific fragments extracted= 2 number of extra gaps= 1 total=32479 # 1t0fA.144.96 read from T0547.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)A147 (1t0fA)S97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E148 (1t0fA)G98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G150 (1t0fA)K100 because P (beta_P) conformation "forbidden" or filtered. T0547 144 :FIA 1t0fA 94 :AID T0547 149 :M 1t0fA 99 :I T0547 151 :HN 1t0fA 101 :HP Number of specific fragments extracted= 3 number of extra gaps= 2 total=32482 # 1pii.144.150 read from T0547.t2k.many.frag # found chain 1pii in template set Warning: unaligning (T0547)M149 (1pii)L156 because G (3-10) conformation "forbidden" or filtered. T0547 144 :FIAAE 1pii 151 :AVAHS T0547 150 :GHN 1pii 157 :EMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32484 # 1dd9A.144.177 read from T0547.t2k.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)A147 (1dd9A)Y276 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E148 (1dd9A)G277 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G150 (1dd9A)N279 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (1dd9A)A281 because P (beta_P) conformation "forbidden" or filtered. T0547 144 :FIA 1dd9A 273 :LAQ T0547 149 :M 1dd9A 278 :I T0547 151 :H 1dd9A 280 :Y Number of specific fragments extracted= 3 number of extra gaps= 3 total=32487 # 1vhyA.144.100 read from T0547.t2k.many.frag # found chain 1vhyA in template set T0547 144 :FIAAEMGHN 1vhyA 99 :SVELGVNVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32488 # 1hdoA.144.20 read from T0547.t2k.many.frag # found chain 1hdoA in training set T0547 144 :FIAAEMGHN 1hdoA 21 :AQAVQAGYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32489 # 1tuoA.144.196 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)E148 (1tuoA)G201 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (1tuoA)P205 because P (beta_P) conformation "forbidden" or filtered. T0547 144 :FIAA 1tuoA 197 :LRHV T0547 149 :MGH 1tuoA 202 :LEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=32491 1qo0D expands to /projects/compbio/data/pdb/1qo0.pdb.gz 1qo0D:# 1qo0D.144.29 read from T0547.t2k.many.frag # adding 1qo0D to template set # found chain 1qo0D in template set Warning: unaligning (T0547)N152 (1qo0D)S38 because P (beta_P) conformation "forbidden" or filtered. T0547 144 :FIAAEMGH 1qo0D 30 :LQLIRIGC Number of specific fragments extracted= 1 number of extra gaps= 1 total=32492 # 1twdA.144.44 read from T0547.t2k.many.frag # found chain 1twdA in training set T0547 144 :FIAAEMGHN 1twdA 45 :SVRQRVTIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=32493 # 1j9lA.144.19 read from T0547.t2k.many.frag # found chain 1j9lA in template set Warning: unaligning (T0547)G150 (1j9lA)E26 because G (3-10) conformation "forbidden" or filtered. T0547 144 :FIAAEM 1j9lA 20 :AELLSE T0547 151 :HN 1j9lA 27 :HE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32495 # 1vr0A.144.48 read from T0547.t2k.many.frag # found chain 1vr0A in template set Warning: unaligning (T0547)H151 (1vr0A)R44 because Y (epsilon') conformation "forbidden" or filtered. T0547 144 :FIAAEMG 1vr0A 37 :ALNNGCK T0547 152 :N 1vr0A 45 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=32497 # 2b9eA.144.118 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)E148 (2b9eA)K249 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M149 (2b9eA)N250 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G150 (2b9eA)Q251 because E (beta_S) conformation "forbidden" or filtered. T0547 144 :FIAA 2b9eA 245 :AALL T0547 151 :HN 2b9eA 252 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32499 # 7odcA.144.122 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 144 :FIAAEMGHN 7odcA 123 :AASNGVQMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=32500 # 1x7dA.144.146 read from T0547.t2k.many.frag # found chain 1x7dA in training set T0547 144 :FIAAEMGHN 1x7dA 147 :AFHKHLGIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32501 # 1wuiS.144.60 read from T0547.t2k.many.frag # found chain 1wuiS in training set T0547 144 :FIAAEMGHN 1wuiS 61 :EQAVNSPHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32502 # 2cvbA.145.91 read from T0547.t2k.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)E148 (2cvbA)G95 because L (left) conformation "forbidden" or filtered. T0547 145 :IAA 2cvbA 92 :EEH T0547 149 :MGHNI 2cvbA 96 :IFFPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=32504 # 1rkxA.145.27 read from T0547.t2k.many.frag # found chain 1rkxA in template set T0547 145 :IAAEMGHNI 1rkxA 28 :WLQTMGATV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32505 # 1j0dA.145.86 read from T0547.t2k.many.frag # found chain 1j0dA in template set T0547 145 :IAAEMGHNI 1j0dA 87 :LAAKLGKKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=32506 # 1pea.145.134 read from T0547.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0547)A147 (1pea)R137 because N (gamma') conformation "forbidden" or filtered. T0547 145 :IA 1pea 135 :LI T0547 148 :EMGHNI 1pea 138 :HYGERV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32508 # 1qopB.145.120 read from T0547.t2k.many.frag # found chain 1qopB in training set Warning: unaligning (T0547)N152 (1qopB)K129 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAEMGH 1qopB 122 :ASALLGL T0547 153 :I 1qopB 130 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=32510 # 1woqA.145.109 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)H151 (1woqA)R116 because Y (epsilon') conformation "forbidden" or filtered. T0547 145 :IAAEMG 1woqA 110 :LTARLG T0547 152 :NI 1woqA 117 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32512 # 1i24A.145.29 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 145 :IAAEMGHNI 1i24A 20 :HLSKKNYEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32513 # 1pii.145.151 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 145 :IAAEMGHNI 1pii 152 :VAHSLEMGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32514 # 1k92A.145.28 read from T0547.t2k.many.frag # found chain 1k92A in training set T0547 145 :IAAEMGHNI 1k92A 29 :WMRQKGAVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=32515 # 1xdpA.145.386 read from T0547.t2k.many.frag # found chain 1xdpA in template set T0547 145 :IAAEMGHNI 1xdpA 388 :HAAHNGKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32516 # 1j9lA.145.20 read from T0547.t2k.many.frag # found chain 1j9lA in template set Warning: unaligning (T0547)G150 (1j9lA)E26 because G (3-10) conformation "forbidden" or filtered. T0547 145 :IAAEM 1j9lA 21 :ELLSE T0547 151 :HNI 1j9lA 27 :HEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32518 # 1l0bA.145.25 read from T0547.t2k.many.frag # found chain 1l0bA in template set T0547 145 :IAAEMGHNI 1l0bA 1614 :FAEKYRLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32519 # 1k3yA.145.22 read from T0547.t2k.many.frag # found chain 1k3yA in training set T0547 145 :IAAEMGHNI 1k3yA 24 :AAAGVEFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32520 # 1hdoA.145.21 read from T0547.t2k.many.frag # found chain 1hdoA in training set T0547 145 :IAAEMGHNI 1hdoA 22 :QAVQAGYEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32521 # 1jayA.145.18 read from T0547.t2k.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)M149 (1jayA)L23 because G (3-10) conformation "forbidden" or filtered. T0547 145 :IAAE 1jayA 19 :RLAT T0547 150 :GHNI 1jayA 24 :GHEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32523 # 1efpB.145.75 read from T0547.t2k.many.frag # found chain 1efpB in template set T0547 145 :IAAEMGHNI 1efpB 76 :LAMGADRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32524 # 2b9eA.145.119 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)E148 (2b9eA)K249 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G150 (2b9eA)Q251 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (2b9eA)G252 because S (epsilon) conformation "forbidden" or filtered. T0547 145 :IAA 2b9eA 246 :ALL T0547 149 :M 2b9eA 250 :N T0547 152 :NI 2b9eA 253 :KI Number of specific fragments extracted= 3 number of extra gaps= 2 total=32527 # 1tt7A.145.169 read from T0547.t2k.many.frag # found chain 1tt7A in template set T0547 145 :IAAEMGHNI 1tt7A 170 :MLNKRGYDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32528 # 1qo0D.145.30 read from T0547.t2k.many.frag # found chain 1qo0D in template set T0547 145 :IAAEMGHNI 1qo0D 31 :QLIRIGCSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32529 # 1i6lA.145.26 read from T0547.t2k.many.frag # found chain 1i6lA in training set T0547 145 :IAAEMGHNI 1i6lA 27 :VELQHEYNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=32530 1vk4A expands to /projects/compbio/data/pdb/1vk4.pdb.gz 1vk4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 232, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 234, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 244, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 246, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 248, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 250, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 252, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 254, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 256, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 258, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 260, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 262, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 264, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 266, because occupancy 0.500 <= existing 0.500 in 1vk4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1392, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1394, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1396, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1402, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1404, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1406, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1408, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1507, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1509, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1511, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1513, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1515, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1517, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1765, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1767, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1977, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1979, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1981, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1983, because occupancy 0.350 <= existing 0.650 in 1vk4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2198, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 2200, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 2202, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 2204, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 2206, because occupancy 0.350 <= existing 0.650 in 1vk4A # 1vk4A.145.44 read from T0547.t2k.many.frag # adding 1vk4A to template set # found chain 1vk4A in template set T0547 145 :IAAEMGHNI 1vk4A 33 :TSSLLGVKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32531 # 1y5mA.145.36 read from T0547.t2k.many.frag # found chain 1y5mA in template set T0547 145 :IAAEMGHNI 1y5mA 53 :HLSKMGAHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32532 # 1twdA.145.45 read from T0547.t2k.many.frag # found chain 1twdA in training set T0547 145 :IAAEMGHNI 1twdA 46 :VRQRVTIPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32533 # 1t0fA.145.97 read from T0547.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)E148 (1t0fA)G98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (1t0fA)P102 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAA 1t0fA 95 :IDS T0547 149 :MGH 1t0fA 99 :IKH T0547 153 :I 1t0fA 103 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=32536 # 1zx0A.145.101 read from T0547.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)H151 (1zx0A)H108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (1zx0A)K109 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAEMG 1zx0A 102 :WAPRQT T0547 153 :I 1zx0A 110 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=32538 # 1dd9A.145.178 read from T0547.t2k.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)E148 (1dd9A)G277 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G150 (1dd9A)N279 because G (3-10) conformation "forbidden" or filtered. T0547 145 :IAA 1dd9A 274 :AQY T0547 149 :M 1dd9A 278 :I T0547 151 :HNI 1dd9A 280 :YAV Number of specific fragments extracted= 3 number of extra gaps= 2 total=32541 # 1y1pA.145.29 read from T0547.t2k.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)N152 (1y1pA)K38 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAEMGH 1y1pA 31 :QLLEHGY T0547 153 :I 1y1pA 39 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=32543 # 1tuoA.145.197 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)E148 (1tuoA)G201 because L (left) conformation "forbidden" or filtered. T0547 145 :IAA 1tuoA 198 :RHV T0547 149 :MGHNI 1tuoA 202 :LEIPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32545 # 1nar.145.178 read from T0547.t2k.many.frag # found chain 1nar in training set Warning: unaligning (T0547)G150 (1nar)Y184 because G (3-10) conformation "forbidden" or filtered. T0547 145 :IAAEM 1nar 179 :NAKKD T0547 151 :HNI 1nar 185 :INW Number of specific fragments extracted= 2 number of extra gaps= 1 total=32547 # 1dp4A.145.141 read from T0547.t2k.many.frag # found chain 1dp4A in template set Warning: unaligning (T0547)E148 (1dp4A)G145 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G150 (1dp4A)E147 because G (3-10) conformation "forbidden" or filtered. T0547 145 :IAA 1dp4A 142 :RRL T0547 149 :M 1dp4A 146 :W T0547 151 :HNI 1dp4A 148 :HQA Number of specific fragments extracted= 3 number of extra gaps= 2 total=32550 # 1pea.146.135 read from T0547.t2k.many.frag # found chain 1pea in template set T0547 146 :AAEMGHNIT 1pea 136 :IRHYGERVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32551 # 1rkxA.146.28 read from T0547.t2k.many.frag # found chain 1rkxA in template set T0547 146 :AAEMGHNIT 1rkxA 29 :LQTMGATVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32552 # 1j0dA.146.87 read from T0547.t2k.many.frag # found chain 1j0dA in template set T0547 146 :AAEMGHNIT 1j0dA 88 :AAKLGKKCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32553 # 1qopB.146.121 read from T0547.t2k.many.frag # found chain 1qopB in training set T0547 146 :AAEMGHNIT 1qopB 123 :SALLGLKCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32554 # 1j9lA.146.21 read from T0547.t2k.many.frag # found chain 1j9lA in template set T0547 146 :AAEMGHNIT 1j9lA 22 :LLSEEHEVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32555 # 1woqA.146.110 read from T0547.t2k.many.frag # found chain 1woqA in training set T0547 146 :AAEMGHNIT 1woqA 111 :TARLGRPVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32556 # 1i24A.146.30 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)N152 (1i24A)E27 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAEMGH 1i24A 21 :LSKKNY T0547 153 :IT 1i24A 28 :VC Number of specific fragments extracted= 2 number of extra gaps= 1 total=32558 # 1pii.146.152 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 146 :AAEMGHNIT 1pii 153 :AHSLEMGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32559 # 1i6lA.146.27 read from T0547.t2k.many.frag # found chain 1i6lA in training set Warning: unaligning (T0547)G150 (1i6lA)E32 because G (3-10) conformation "forbidden" or filtered. T0547 146 :AAEM 1i6lA 28 :ELQH T0547 151 :HNIT 1i6lA 33 :YNCY Number of specific fragments extracted= 2 number of extra gaps= 1 total=32561 # 1lst.146.37 read from T0547.t2k.many.frag # found chain 1lst in training set T0547 146 :AAEMGHNIT 1lst 38 :CKRMQVKCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32562 # 1xdpA.146.387 read from T0547.t2k.many.frag # found chain 1xdpA in template set T0547 146 :AAEMGHNIT 1xdpA 389 :AAHNGKKVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32563 # 1hdoA.146.22 read from T0547.t2k.many.frag # found chain 1hdoA in training set T0547 146 :AAEMGHNIT 1hdoA 23 :AVQAGYEVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32564 # 1k92A.146.29 read from T0547.t2k.many.frag # found chain 1k92A in training set T0547 146 :AAEMGHNIT 1k92A 30 :MRQKGAVPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32565 # 1tt7A.146.170 read from T0547.t2k.many.frag # found chain 1tt7A in template set T0547 146 :AAEMGHNIT 1tt7A 171 :LNKRGYDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32566 # 1r12A.146.147 read from T0547.t2k.many.frag # found chain 1r12A in training set Warning: unaligning (T0547)M149 (1r12A)A151 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAE 1r12A 148 :AHS T0547 150 :GHNIT 1r12A 152 :EGEVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=32568 # 1vk4A.146.45 read from T0547.t2k.many.frag # found chain 1vk4A in template set Warning: unaligning (T0547)N152 (1vk4A)K40 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAEMGH 1vk4A 34 :SSLLGV T0547 153 :IT 1vk4A 41 :TK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32570 # 1zx0A.146.102 read from T0547.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)H151 (1zx0A)H108 because E (beta_S) conformation "forbidden" or filtered. T0547 146 :AAEMG 1zx0A 103 :APRQT T0547 152 :NIT 1zx0A 109 :KVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32572 # 2cvbA.146.92 read from T0547.t2k.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)E148 (2cvbA)G95 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (2cvbA)P99 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AA 2cvbA 93 :EH T0547 149 :MGH 2cvbA 96 :IFF T0547 153 :IT 2cvbA 100 :YL Number of specific fragments extracted= 3 number of extra gaps= 2 total=32575 # 1jayA.146.19 read from T0547.t2k.many.frag # found chain 1jayA in training set T0547 146 :AAEMGHNIT 1jayA 20 :LATLGHEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32576 # 2b9eA.146.120 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)E148 (2b9eA)K249 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M149 (2b9eA)N250 because L (left) conformation "forbidden" or filtered. T0547 146 :AA 2b9eA 247 :LL T0547 150 :GHNIT 2b9eA 251 :QGKIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32578 # 1y1pA.146.30 read from T0547.t2k.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)N152 (1y1pA)K38 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAEMGH 1y1pA 32 :LLEHGY T0547 153 :IT 1y1pA 39 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32580 # 1qo0D.146.31 read from T0547.t2k.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)N152 (1qo0D)S38 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAEMGH 1qo0D 32 :LIRIGC T0547 153 :IT 1qo0D 39 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32582 # 1efpB.146.76 read from T0547.t2k.many.frag # found chain 1efpB in template set Warning: unaligning (T0547)E148 (1efpB)G79 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (1efpB)R82 because Y (epsilon') conformation "forbidden" or filtered. T0547 146 :AA 1efpB 77 :AM T0547 149 :MG 1efpB 80 :AD T0547 152 :NIT 1efpB 83 :AIL Number of specific fragments extracted= 3 number of extra gaps= 2 total=32585 # 1p3dA.146.37 read from T0547.t2k.many.frag # found chain 1p3dA in training set T0547 146 :AAEMGHNIT 1p3dA 38 :LLNEGYQIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32586 # 1twdA.146.46 read from T0547.t2k.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)T154 (1twdA)H55 because D (zeta) conformation "forbidden" or filtered. T0547 146 :AAEMGHNI 1twdA 47 :RQRVTIPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=32587 2bh1X expands to /projects/compbio/data/pdb/2bh1.pdb.gz 2bh1X:# 2bh1X.146.54 read from T0547.t2k.many.frag # adding 2bh1X to template set # found chain 2bh1X in template set T0547 146 :AAEMGHNIT 2bh1X 55 :KRVVKHAFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32588 1n2sA expands to /projects/compbio/data/pdb/1n2s.pdb.gz 1n2sA:# 1n2sA.146.139 read from T0547.t2k.many.frag # adding 1n2sA to template set # found chain 1n2sA in template set T0547 146 :AAEMGHNIT 1n2sA 140 :QDNCPKHLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32589 # 1lucA.146.93 read from T0547.t2k.many.frag # found chain 1lucA in training set T0547 146 :AAEMGHNIT 1lucA 94 :DQMSKGRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32590 # 1y5mA.146.37 read from T0547.t2k.many.frag # found chain 1y5mA in template set T0547 146 :AAEMGHNIT 1y5mA 54 :LSKMGAHVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32591 # 2c5aA.146.48 read from T0547.t2k.many.frag # found chain 2c5aA in training set T0547 146 :AAEMGHNIT 2c5aA 47 :LKHEGHYVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32592 # 1pea.147.136 read from T0547.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0547)H151 (1pea)E141 because G (3-10) conformation "forbidden" or filtered. T0547 147 :AEMG 1pea 137 :RHYG T0547 152 :NITL 1pea 142 :RVVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32594 # 1j9lA.147.22 read from T0547.t2k.many.frag # found chain 1j9lA in template set Warning: unaligning (T0547)G150 (1j9lA)E26 because G (3-10) conformation "forbidden" or filtered. T0547 147 :AEM 1j9lA 23 :LSE T0547 151 :HNITL 1j9lA 27 :HEVFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32596 # 1qopB.147.122 read from T0547.t2k.many.frag # found chain 1qopB in training set Warning: unaligning (T0547)M149 (1qopB)L126 because G (3-10) conformation "forbidden" or filtered. T0547 147 :AE 1qopB 124 :AL T0547 150 :GHNITL 1qopB 127 :GLKCRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32598 # 1i6lA.147.28 read from T0547.t2k.many.frag # found chain 1i6lA in training set Warning: unaligning (T0547)G150 (1i6lA)E32 because G (3-10) conformation "forbidden" or filtered. T0547 147 :AEM 1i6lA 29 :LQH T0547 151 :HNITL 1i6lA 33 :YNCYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32600 # 1j0dA.147.88 read from T0547.t2k.many.frag # found chain 1j0dA in template set T0547 147 :AEMGHNITL 1j0dA 89 :AKLGKKCVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32601 # 1lst.147.38 read from T0547.t2k.many.frag # found chain 1lst in training set T0547 147 :AEMGHNITL 1lst 39 :KRMQVKCTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=32602 # 1pii.147.153 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 147 :AEMGHNITL 1pii 154 :HSLEMGVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32603 # 1jayA.147.20 read from T0547.t2k.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)N152 (1jayA)E26 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 1jayA 21 :ATLGH T0547 153 :ITL 1jayA 27 :IVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32605 # 1i24A.147.31 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 147 :AEMGHNITL 1i24A 22 :SKKNYEVCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32606 # 1xdpA.147.388 read from T0547.t2k.many.frag # found chain 1xdpA in template set Warning: unaligning (T0547)N152 (1xdpA)K395 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 1xdpA 390 :AHNGK T0547 153 :ITL 1xdpA 396 :VTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32608 # 1r12A.147.148 read from T0547.t2k.many.frag # found chain 1r12A in training set T0547 147 :AEMGHNITL 1r12A 149 :HSAEGEVTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32609 # 1rkxA.147.29 read from T0547.t2k.many.frag # found chain 1rkxA in template set T0547 147 :AEMGHNITL 1rkxA 30 :QTMGATVKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32610 # 1vk4A.147.46 read from T0547.t2k.many.frag # found chain 1vk4A in template set T0547 147 :AEMGHNITL 1vk4A 35 :SLLGVKTKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32611 # 1hdoA.147.23 read from T0547.t2k.many.frag # found chain 1hdoA in training set T0547 147 :AEMGHNITL 1hdoA 24 :VQAGYEVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32612 # 1woqA.147.111 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N152 (1woqA)P117 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 1woqA 112 :ARLGR T0547 153 :ITL 1woqA 118 :VEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32614 # 2b9eA.147.121 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)E148 (2b9eA)K249 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M149 (2b9eA)N250 because L (left) conformation "forbidden" or filtered. T0547 147 :A 2b9eA 248 :L T0547 150 :GHNITL 2b9eA 251 :QGKIFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32616 # 2bg5A.147.130 read from T0547.t2k.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)G150 (2bg5A)Y383 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (2bg5A)G384 because Y (epsilon') conformation "forbidden" or filtered. T0547 147 :AEM 2bg5A 380 :ASA T0547 152 :NITL 2bg5A 385 :NVQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32618 # 1tt7A.147.171 read from T0547.t2k.many.frag # found chain 1tt7A in template set T0547 147 :AEMGHNITL 1tt7A 172 :NKRGYDVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32619 # 1gu7A.147.188 read from T0547.t2k.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)N152 (1gu7A)N216 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 1gu7A 211 :KLLNF T0547 153 :ITL 1gu7A 217 :SIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32621 # 1y1pA.147.31 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 147 :AEMGHNITL 1y1pA 33 :LEHGYKVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32622 # 1wuiS.147.63 read from T0547.t2k.many.frag # found chain 1wuiS in training set Warning: unaligning (T0547)N152 (1wuiS)G69 because S (epsilon) conformation "forbidden" or filtered. T0547 147 :AEMGH 1wuiS 64 :VNSPH T0547 153 :ITL 1wuiS 70 :FIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32624 # 1lucA.147.94 read from T0547.t2k.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)M149 (1lucA)S97 because G (3-10) conformation "forbidden" or filtered. T0547 147 :AE 1lucA 95 :QM T0547 150 :GHNITL 1lucA 98 :KGRFRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32626 # 1nzjA.147.33 read from T0547.t2k.many.frag # found chain 1nzjA in training set T0547 147 :AEMGHNITL 1nzjA 34 :RARQGRWLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32627 # 1zx0A.147.103 read from T0547.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)N152 (1zx0A)K109 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 1zx0A 104 :PRQTH T0547 153 :ITL 1zx0A 110 :VIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=32629 1xd8A expands to /projects/compbio/data/pdb/1xd8.pdb.gz 1xd8A:# 1xd8A.147.26 read from T0547.t2k.many.frag # adding 1xd8A to template set # found chain 1xd8A in template set Warning: unaligning (T0547)N152 (1xd8A)K32 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 1xd8A 27 :AEMGK T0547 153 :ITL 1xd8A 33 :VMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32631 # 1y5mA.147.38 read from T0547.t2k.many.frag # found chain 1y5mA in template set T0547 147 :AEMGHNITL 1y5mA 55 :SKMGAHVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32632 # 2carA.147.5 read from T0547.t2k.many.frag # found chain 2carA in training set Warning: unaligning (T0547)N152 (2carA)K9 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 2carA 4 :SLVGK T0547 153 :ITL 2carA 10 :IVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32634 # 2bh1X.147.55 read from T0547.t2k.many.frag # found chain 2bh1X in template set Warning: unaligning (T0547)H151 (2bh1X)H60 because Y (epsilon') conformation "forbidden" or filtered. T0547 147 :AEMG 2bh1X 56 :RVVK T0547 152 :NITL 2bh1X 61 :AFQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32636 1m5wA expands to /projects/compbio/data/pdb/1m5w.pdb.gz 1m5wA:# 1m5wA.147.62 read from T0547.t2k.many.frag # adding 1m5wA to template set # found chain 1m5wA in template set T0547 147 :AEMGHNITL 1m5wA 63 :QTLDTRMNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32637 # 1n2sA.147.140 read from T0547.t2k.many.frag # found chain 1n2sA in template set T0547 147 :AEMGHNITL 1n2sA 141 :DNCPKHLIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32638 # 1pea.148.137 read from T0547.t2k.many.frag # found chain 1pea in template set T0547 148 :EMGHNITLT 1pea 138 :HYGERVVFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32639 # 1j9lA.148.23 read from T0547.t2k.many.frag # found chain 1j9lA in template set T0547 148 :EMGHNITLT 1j9lA 24 :SEEHEVFVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32640 # 1j0dA.148.89 read from T0547.t2k.many.frag # found chain 1j0dA in template set T0547 148 :EMGHNITLT 1j0dA 90 :KLGKKCVLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32641 # 1i6lA.148.29 read from T0547.t2k.many.frag # found chain 1i6lA in training set T0547 148 :EMGHNITLT 1i6lA 30 :QHEYNCYFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=32642 # 1r12A.148.149 read from T0547.t2k.many.frag # found chain 1r12A in training set T0547 148 :EMGHNITLT 1r12A 150 :SAEGEVTYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=32643 # 1wuiS.148.64 read from T0547.t2k.many.frag # found chain 1wuiS in training set T0547 148 :EMGHNITLT 1wuiS 65 :NSPHGFIAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32644 # 1jayA.148.21 read from T0547.t2k.many.frag # found chain 1jayA in training set T0547 148 :EMGHNITLT 1jayA 22 :TLGHEIVVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32645 # 2b9eA.148.122 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)E148 (2b9eA)K249 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M149 (2b9eA)N250 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (2b9eA)G252 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (2b9eA)K253 because E (beta_S) conformation "forbidden" or filtered. T0547 150 :G 2b9eA 251 :Q T0547 153 :ITLT 2b9eA 254 :IFAF Number of specific fragments extracted= 2 number of extra gaps= 2 total=32647 # 1xdpA.148.389 read from T0547.t2k.many.frag # found chain 1xdpA in template set T0547 148 :EMGHNITLT 1xdpA 391 :HNGKKVTVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32648 # 1hdoA.148.24 read from T0547.t2k.many.frag # found chain 1hdoA in training set Warning: unaligning (T0547)H151 (1hdoA)Y28 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :EMG 1hdoA 25 :QAG T0547 152 :NITLT 1hdoA 29 :EVTVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32650 # 1i24A.148.32 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 148 :EMGHNITLT 1i24A 23 :KKNYEVCIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32651 # 1pii.148.154 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 148 :EMGHNITLT 1pii 155 :SLEMGVLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32652 # 1y1pA.148.32 read from T0547.t2k.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)N152 (1y1pA)K38 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :EMGH 1y1pA 34 :EHGY T0547 153 :ITLT 1y1pA 39 :VRGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=32654 # 1qopB.148.123 read from T0547.t2k.many.frag # found chain 1qopB in training set Warning: unaligning (T0547)M149 (1qopB)L126 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (1qopB)K129 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :E 1qopB 125 :L T0547 150 :GH 1qopB 127 :GL T0547 153 :ITLT 1qopB 130 :CRIY Number of specific fragments extracted= 3 number of extra gaps= 2 total=32657 # 1gu7A.148.189 read from T0547.t2k.many.frag # found chain 1gu7A in training set T0547 148 :EMGHNITLT 1gu7A 212 :LLNFNSISV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32658 # 2carA.148.6 read from T0547.t2k.many.frag # found chain 2carA in training set T0547 148 :EMGHNITLT 2carA 5 :LVGKKIVFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32659 # 1xd8A.148.27 read from T0547.t2k.many.frag # found chain 1xd8A in template set T0547 148 :EMGHNITLT 1xd8A 28 :EMGKKVMIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32660 # 2bg5A.148.131 read from T0547.t2k.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)G150 (2bg5A)Y383 because G (3-10) conformation "forbidden" or filtered. T0547 148 :EM 2bg5A 381 :SA T0547 151 :HNITLT 2bg5A 384 :GNVQIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=32662 # 1tt7A.148.172 read from T0547.t2k.many.frag # found chain 1tt7A in template set T0547 148 :EMGHNITLT 1tt7A 173 :KRGYDVVAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32663 # 1lst.148.39 read from T0547.t2k.many.frag # found chain 1lst in training set Warning: unaligning (T0547)N152 (1lst)K44 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :EMGH 1lst 40 :RMQV T0547 153 :ITLT 1lst 45 :CTWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32665 # 1xgkA.148.26 read from T0547.t2k.many.frag # found chain 1xgkA in training set T0547 148 :EMGHNITLT 1xgkA 27 :AVGHHVRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32666 # 1rifA.148.154 read from T0547.t2k.many.frag # found chain 1rifA in template set T0547 148 :EMGHNITLT 1rifA 155 :NYEGKILII Number of specific fragments extracted= 1 number of extra gaps= 0 total=32667 1eziA expands to /projects/compbio/data/pdb/1ezi.pdb.gz 1eziA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1eziA.148.42 read from T0547.t2k.many.frag # adding 1eziA to template set # found chain 1eziA in template set Warning: unaligning (T0547)E148 (1eziA)K43 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G150 (1eziA)F45 because E (beta_S) conformation "forbidden" or filtered. T0547 149 :M 1eziA 44 :C T0547 151 :HNITLT 1eziA 46 :DRIIVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=32669 # 1yrbA.148.134 read from T0547.t2k.many.frag # found chain 1yrbA in training set Warning: unaligning (T0547)G150 (1yrbA)P123 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (1yrbA)Y124 because L (left) conformation "forbidden" or filtered. T0547 148 :EM 1yrbA 121 :NL T0547 152 :NITLT 1yrbA 125 :PLVVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=32671 # 1jixA.148.88 read from T0547.t2k.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)G150 (1jixA)K91 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (1jixA)S92 because Y (epsilon') conformation "forbidden" or filtered. T0547 148 :EM 1jixA 89 :KY T0547 152 :NITLT 1jixA 93 :KIYYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32673 # 1oxxK.148.188 read from T0547.t2k.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)N152 (1oxxK)T193 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :EMGH 1oxxK 189 :RLGV T0547 153 :ITLT 1oxxK 194 :LLVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32675 # 1x9iA.148.62 read from T0547.t2k.many.frag # found chain 1x9iA in training set T0547 148 :EMGHNITLT 1x9iA 63 :NWEVEVIAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32676 # 1y5mA.148.39 read from T0547.t2k.many.frag # found chain 1y5mA in template set T0547 148 :EMGHNITLT 1y5mA 56 :KMGAHVVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32677 # 1zcjA.148.57 read from T0547.t2k.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)N152 (1zcjA)S321 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :EMGH 1zcjA 317 :RVGI T0547 153 :ITLT 1zcjA 322 :VVAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32679 1yzhA expands to /projects/compbio/data/pdb/1yzh.pdb.gz 1yzhA:Skipped atom 138, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 140, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 142, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 144, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 146, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 148, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 150, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 152, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 154, because occupancy 0.500 <= existing 0.500 in 1yzhA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 634, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 636, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 638, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 640, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 642, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 644, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 646, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 648, because occupancy 0.500 <= existing 0.500 in 1yzhA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1yzhA.148.62 read from T0547.t2k.many.frag # adding 1yzhA to template set # found chain 1yzhA in template set Warning: unaligning (T0547)G150 (1yzhA)D62 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (1yzhA)N64 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :EM 1yzhA 60 :NP T0547 151 :H 1yzhA 63 :I T0547 153 :ITLT 1yzhA 65 :YIGI Number of specific fragments extracted= 3 number of extra gaps= 2 total=32682 # 1wuiS.149.65 read from T0547.t2k.many.frag # found chain 1wuiS in training set Warning: unaligning (T0547)M149 (1wuiS)S66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (1wuiS)H68 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (1wuiS)G69 because S (epsilon) conformation "forbidden" or filtered. T0547 150 :G 1wuiS 67 :P T0547 153 :ITLTI 1wuiS 70 :FIAVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=32684 # 1gu7A.149.190 read from T0547.t2k.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)N152 (1gu7A)N216 because P (beta_P) conformation "forbidden" or filtered. T0547 149 :MGH 1gu7A 213 :LNF T0547 153 :ITLTI 1gu7A 217 :SISVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32686 # 1hdoA.149.25 read from T0547.t2k.many.frag # found chain 1hdoA in training set T0547 149 :MGHNITLTI 1hdoA 26 :AGYEVTVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32687 # 1yrbA.149.135 read from T0547.t2k.many.frag # found chain 1yrbA in training set Warning: unaligning (T0547)G150 (1yrbA)P123 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (1yrbA)Y124 because L (left) conformation "forbidden" or filtered. T0547 149 :M 1yrbA 122 :L T0547 152 :NITLTI 1yrbA 125 :PLVVYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32689 # 1j9lA.149.24 read from T0547.t2k.many.frag # found chain 1j9lA in template set T0547 149 :MGHNITLTI 1j9lA 25 :EEHEVFVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32690 # 1tt7A.149.173 read from T0547.t2k.many.frag # found chain 1tt7A in template set T0547 149 :MGHNITLTI 1tt7A 174 :RGYDVVAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=32691 # 1jg1A.149.112 read from T0547.t2k.many.frag # found chain 1jg1A in training set T0547 149 :MGHNITLTI 1jg1A 113 :VKTDVYTIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32692 # 1j0dA.149.90 read from T0547.t2k.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)N152 (1j0dA)K94 because P (beta_P) conformation "forbidden" or filtered. T0547 149 :MGH 1j0dA 91 :LGK T0547 153 :ITLTI 1j0dA 95 :CVLIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=32694 # 1pii.149.155 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 149 :MGHNITLTI 1pii 156 :LEMGVLTEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32695 # 1r12A.149.150 read from T0547.t2k.many.frag # found chain 1r12A in training set Warning: unaligning (T0547)G150 (1r12A)E152 because E (beta_S) conformation "forbidden" or filtered. T0547 149 :M 1r12A 151 :A T0547 151 :HNITLTI 1r12A 153 :GEVTYMV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32697 # 1jayA.149.22 read from T0547.t2k.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)N152 (1jayA)E26 because P (beta_P) conformation "forbidden" or filtered. T0547 149 :MGH 1jayA 23 :LGH T0547 153 :ITLTI 1jayA 27 :IVVGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32699 # 1pea.149.138 read from T0547.t2k.many.frag # found chain 1pea in template set T0547 149 :MGHNITLTI 1pea 139 :YGERVVFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32700 # 1i24A.149.33 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 149 :MGHNITLTI 1i24A 24 :KNYEVCIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32701 1vqoL expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoL:# 1vqoL.149.114 read from T0547.t2k.many.frag # adding 1vqoL to template set # found chain 1vqoL in template set Warning: unaligning (T0547)G150 (1vqoL)R115 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I157 (1vqoL)A122 because Y (epsilon') conformation "forbidden" or filtered. T0547 149 :M 1vqoL 114 :V T0547 151 :HNITLT 1vqoL 116 :HELTLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=32703 # 2b9eA.149.123 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)M149 (2b9eA)N250 because L (left) conformation "forbidden" or filtered. T0547 150 :GHNITLTI 2b9eA 251 :QGKIFAFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=32704 1ee6A expands to /projects/compbio/data/pdb/1ee6.pdb.gz 1ee6A:# 1ee6A.149.136 read from T0547.t2k.many.frag # adding 1ee6A to template set # found chain 1ee6A in template set Warning: unaligning (T0547)G150 (1ee6A)T138 because G (3-10) conformation "forbidden" or filtered. T0547 149 :M 1ee6A 137 :T T0547 151 :HNITLTI 1ee6A 139 :YKVVMNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32706 # 1y1pA.149.33 read from T0547.t2k.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)N152 (1y1pA)K38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I157 (1y1pA)A43 because Y (epsilon') conformation "forbidden" or filtered. T0547 149 :MGH 1y1pA 35 :HGY T0547 153 :ITLT 1y1pA 39 :VRGT Number of specific fragments extracted= 2 number of extra gaps= 2 total=32708 # 1xd8A.149.28 read from T0547.t2k.many.frag # found chain 1xd8A in template set T0547 149 :MGHNITLTI 1xd8A 29 :MGKKVMIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32709 # 1oxxK.149.189 read from T0547.t2k.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)H151 (1oxxK)V192 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I157 (1oxxK)S198 because Y (epsilon') conformation "forbidden" or filtered. T0547 149 :MG 1oxxK 190 :LG T0547 152 :NITLT 1oxxK 193 :TLLVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=32711 1xmxA expands to /projects/compbio/data/pdb/1xmx.pdb.gz 1xmxA:# 1xmxA.149.25 read from T0547.t2k.many.frag # adding 1xmxA to template set # found chain 1xmxA in template set T0547 149 :MGHNITLTI 1xmxA 24 :TVSRHIIFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32712 # 1rifA.149.155 read from T0547.t2k.many.frag # found chain 1rifA in template set T0547 149 :MGHNITLTI 1rifA 156 :YEGKILIIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32713 # 1xgkA.149.27 read from T0547.t2k.many.frag # found chain 1xgkA in training set T0547 149 :MGHNITLTI 1xgkA 28 :VGHHVRAQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32714 # 1xdpA.149.390 read from T0547.t2k.many.frag # found chain 1xdpA in template set Warning: unaligning (T0547)N152 (1xdpA)K395 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L155 (1xdpA)V398 because D (zeta) conformation "forbidden" or filtered. T0547 149 :MGH 1xdpA 392 :NGK T0547 153 :IT 1xdpA 396 :VT T0547 156 :TI 1xdpA 399 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=32717 # 2carA.149.7 read from T0547.t2k.many.frag # found chain 2carA in training set T0547 149 :MGHNITLTI 2carA 6 :VGKKIVFVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32718 # 1i6lA.149.30 read from T0547.t2k.many.frag # found chain 1i6lA in training set Warning: unaligning (T0547)N152 (1i6lA)N34 because P (beta_P) conformation "forbidden" or filtered. T0547 149 :MGH 1i6lA 31 :HEY T0547 153 :ITLTI 1i6lA 35 :CYFCI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32720 # 1zcjA.149.58 read from T0547.t2k.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)T154 (1zcjA)V323 because D (zeta) conformation "forbidden" or filtered. T0547 149 :MGHNI 1zcjA 318 :VGISV T0547 155 :LTI 1zcjA 324 :AVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32722 # 1qopB.149.124 read from T0547.t2k.many.frag # found chain 1qopB in training set T0547 149 :MGHNITLTI 1qopB 126 :LGLKCRIYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=32723 # 2ak3A.149.104 read from T0547.t2k.many.frag # found chain 2ak3A in template set Warning: unaligning (T0547)H151 (2ak3A)I106 because P (beta_P) conformation "forbidden" or filtered. T0547 149 :MG 2ak3A 104 :YQ T0547 152 :NITLTI 2ak3A 107 :DTVINL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32725 # 1y5mA.149.40 read from T0547.t2k.many.frag # found chain 1y5mA in template set T0547 149 :MGHNITLTI 1y5mA 57 :MGAHVVLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32726 # 2bg5A.149.132 read from T0547.t2k.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)G150 (2bg5A)Y383 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (2bg5A)G384 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (2bg5A)N385 because D (zeta) conformation "forbidden" or filtered. T0547 149 :M 2bg5A 382 :A T0547 153 :ITLTI 2bg5A 386 :VQIMY Number of specific fragments extracted= 2 number of extra gaps= 1 total=32728 # 1gu7A.150.191 read from T0547.t2k.many.frag # found chain 1gu7A in training set T0547 150 :GHNITLTIE 1gu7A 214 :NFNSISVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32729 # 1hdoA.150.26 read from T0547.t2k.many.frag # found chain 1hdoA in training set T0547 150 :GHNITLTIE 1hdoA 27 :GYEVTVLVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32730 # 1wuiS.150.66 read from T0547.t2k.many.frag # found chain 1wuiS in training set Warning: unaligning (T0547)N152 (1wuiS)G69 because S (epsilon) conformation "forbidden" or filtered. T0547 150 :GH 1wuiS 67 :PH T0547 153 :ITLTIE 1wuiS 70 :FIAVVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32732 # 1yrbA.150.136 read from T0547.t2k.many.frag # found chain 1yrbA in training set Warning: unaligning (T0547)H151 (1yrbA)Y124 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (1yrbA)P125 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :G 1yrbA 123 :P T0547 153 :ITLTIE 1yrbA 126 :LVVYIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32734 # 1pii.150.156 read from T0547.t2k.many.frag # found chain 1pii in template set Warning: unaligning (T0547)H151 (1pii)M158 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :G 1pii 157 :E T0547 152 :NITLTIE 1pii 159 :GVLTEVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32736 # 1j0dA.150.91 read from T0547.t2k.many.frag # found chain 1j0dA in template set T0547 150 :GHNITLTIE 1j0dA 92 :GKKCVLIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32737 # 1vqoL.150.115 read from T0547.t2k.many.frag # found chain 1vqoL in template set Warning: unaligning (T0547)N152 (1vqoL)E117 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :GH 1vqoL 115 :RH T0547 153 :ITLTIE 1vqoL 118 :LTLIAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=32739 # 1pea.150.139 read from T0547.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0547)N152 (1pea)R142 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :GH 1pea 140 :GE T0547 153 :ITLTIE 1pea 143 :VVFIGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32741 # 1jg1A.150.113 read from T0547.t2k.many.frag # found chain 1jg1A in training set T0547 150 :GHNITLTIE 1jg1A 114 :KTDVYTIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=32742 # 1tt7A.150.174 read from T0547.t2k.many.frag # found chain 1tt7A in template set T0547 150 :GHNITLTIE 1tt7A 175 :GYDVVASTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32743 # 1r12A.150.151 read from T0547.t2k.many.frag # found chain 1r12A in training set Warning: unaligning (T0547)E158 (1r12A)D160 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :GHNITLTI 1r12A 152 :EGEVTYMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=32744 # 1i24A.150.34 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 150 :GHNITLTIE 1i24A 25 :NYEVCIVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=32745 # 1jayA.150.23 read from T0547.t2k.many.frag # found chain 1jayA in training set T0547 150 :GHNITLTIE 1jayA 24 :GHEIVVGSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32746 # 1j9lA.150.25 read from T0547.t2k.many.frag # found chain 1j9lA in template set Warning: unaligning (T0547)G150 (1j9lA)E26 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E158 (1j9lA)P34 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :HNITLTI 1j9lA 27 :HEVFVVA Number of specific fragments extracted= 1 number of extra gaps= 2 total=32747 # 1xmxA.150.26 read from T0547.t2k.many.frag # found chain 1xmxA in template set Warning: unaligning (T0547)H151 (1xmxA)S26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E158 (1xmxA)G33 because Y (epsilon') conformation "forbidden" or filtered. T0547 150 :G 1xmxA 25 :V T0547 152 :NITLTI 1xmxA 27 :RHIIFI Number of specific fragments extracted= 2 number of extra gaps= 2 total=32749 # 1y1pA.150.34 read from T0547.t2k.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)H151 (1y1pA)Y37 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :G 1y1pA 36 :G T0547 152 :NITLTIE 1y1pA 38 :KVRGTAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32751 # 2b9eA.150.124 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)H151 (2b9eA)G252 because S (epsilon) conformation "forbidden" or filtered. T0547 150 :G 2b9eA 251 :Q T0547 152 :NITLTIE 2b9eA 253 :KIFAFDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32753 # 2fcjA.150.2 read from T0547.t2k.many.frag # found chain 2fcjA in training set T0547 150 :GHNITLTIE 2fcjA 3 :RVEKVIIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32754 # 1oxxK.150.190 read from T0547.t2k.many.frag # found chain 1oxxK in training set T0547 150 :GHNITLTIE 1oxxK 191 :GVTLLVVSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=32755 # 1xd8A.150.29 read from T0547.t2k.many.frag # found chain 1xd8A in template set Warning: unaligning (T0547)N152 (1xd8A)K32 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :GH 1xd8A 30 :GK T0547 153 :ITLTIE 1xd8A 33 :VMIVGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=32757 # 1rifA.150.156 read from T0547.t2k.many.frag # found chain 1rifA in template set T0547 150 :GHNITLTIE 1rifA 157 :EGKILIIVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=32758 # 1xdpA.150.391 read from T0547.t2k.many.frag # found chain 1xdpA in template set T0547 150 :GHNITLTIE 1xdpA 393 :GKKVTVVVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32759 # 1xgkA.150.28 read from T0547.t2k.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)H151 (1xgkA)H30 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :G 1xgkA 29 :G T0547 152 :NITLTIE 1xgkA 31 :HVRAQVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=32761 # 1zcjA.150.59 read from T0547.t2k.many.frag # found chain 1zcjA in template set T0547 150 :GHNITLTIE 1zcjA 319 :GISVVAVES Number of specific fragments extracted= 1 number of extra gaps= 0 total=32762 # 1qopB.150.125 read from T0547.t2k.many.frag # found chain 1qopB in training set T0547 150 :GHNITLTIE 1qopB 127 :GLKCRIYMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32763 # 2carA.150.8 read from T0547.t2k.many.frag # found chain 2carA in training set T0547 150 :GHNITLTIE 2carA 7 :GKKIVFVTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32764 # 1y5mA.150.41 read from T0547.t2k.many.frag # found chain 1y5mA in template set T0547 150 :GHNITLTIE 1y5mA 58 :GAHVVLTAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32765 # 2dpmA.150.53 read from T0547.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)T154 (2dpmA)A58 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E158 (2dpmA)D62 because Y (epsilon') conformation "forbidden" or filtered. T0547 150 :GHNI 2dpmA 54 :APKD T0547 155 :LTI 2dpmA 59 :VIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=32767 # 1usgA.150.137 read from T0547.t2k.many.frag # found chain 1usgA in training set Warning: unaligning (T0547)G150 (1usgA)P138 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1usgA 139 :QRIAIIHD Number of specific fragments extracted= 1 number of extra gaps= 1 total=32768 # 1ee6A.150.137 read from T0547.t2k.many.frag # found chain 1ee6A in template set Warning: unaligning (T0547)G150 (1ee6A)T138 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (1ee6A)K140 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E158 (1ee6A)E146 because E (beta_S) conformation "forbidden" or filtered. T0547 151 :H 1ee6A 139 :Y T0547 153 :ITLTI 1ee6A 141 :VVMNV Number of specific fragments extracted= 2 number of extra gaps= 3 total=32770 # 1gu7A.151.192 read from T0547.t2k.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)G159 (1gu7A)D223 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1gu7A 215 :FNSISVIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=32771 # 1hdoA.151.27 read from T0547.t2k.many.frag # found chain 1hdoA in training set T0547 151 :HNITLTIEG 1hdoA 28 :YEVTVLVRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32772 # 1pii.151.157 read from T0547.t2k.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G159 (1pii)N166 because Y (epsilon') conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1pii 158 :MGVLTEVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=32773 # 1yrbA.151.137 read from T0547.t2k.many.frag # found chain 1yrbA in training set T0547 151 :HNITLTIEG 1yrbA 124 :YPLVVYISD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32774 # 1wuiS.151.67 read from T0547.t2k.many.frag # found chain 1wuiS in training set Warning: unaligning (T0547)H151 (1wuiS)H68 because H (helix) conformation "forbidden" or filtered. T0547 152 :NITLTIEG 1wuiS 69 :GFIAVVEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=32775 # 1jayA.151.24 read from T0547.t2k.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)G159 (1jayA)R33 because E (beta_S) conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1jayA 25 :HEIVVGSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=32776 # 1y1pA.151.35 read from T0547.t2k.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G159 (1y1pA)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1y1pA 37 :YKVRGTAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=32777 # 1r12A.151.152 read from T0547.t2k.many.frag # found chain 1r12A in training set Warning: unaligning (T0547)H151 (1r12A)G153 because S (epsilon) conformation "forbidden" or filtered. T0547 152 :NITLTIEG 1r12A 154 :EVTYMVDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=32778 # 1tt7A.151.175 read from T0547.t2k.many.frag # found chain 1tt7A in template set T0547 151 :HNITLTIEG 1tt7A 176 :YDVVASTGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=32779 # 1i24A.151.35 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)N152 (1i24A)E27 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :H 1i24A 26 :Y T0547 153 :ITLTIEG 1i24A 28 :VCIVDNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32781 # 1pea.151.140 read from T0547.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0547)H151 (1pea)E141 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (1pea)R142 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIEG 1pea 143 :VVFIGSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=32782 # 1oxxK.151.191 read from T0547.t2k.many.frag # found chain 1oxxK in training set T0547 151 :HNITLTIEG 1oxxK 192 :VTLLVVSHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32783 # 1j0dA.151.92 read from T0547.t2k.many.frag # found chain 1j0dA in template set T0547 151 :HNITLTIEG 1j0dA 93 :KKCVLIQED Number of specific fragments extracted= 1 number of extra gaps= 0 total=32784 # 1jg1A.151.114 read from T0547.t2k.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)N152 (1jg1A)D116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1jg1A)I123 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :H 1jg1A 115 :T T0547 153 :ITLTIE 1jg1A 117 :VYTIER Number of specific fragments extracted= 2 number of extra gaps= 2 total=32786 # 2fcjA.151.3 read from T0547.t2k.many.frag # found chain 2fcjA in training set T0547 151 :HNITLTIEG 2fcjA 4 :VEKVIIVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32787 # 1j9lA.151.26 read from T0547.t2k.many.frag # found chain 1j9lA in template set Warning: unaligning (T0547)T156 (1j9lA)V32 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1j9lA)D35 because G (3-10) conformation "forbidden" or filtered. T0547 151 :HNITL 1j9lA 27 :HEVFV T0547 157 :IE 1j9lA 33 :AP Number of specific fragments extracted= 2 number of extra gaps= 2 total=32789 # 1zs9A.151.204 read from T0547.t2k.many.frag # found chain 1zs9A in training set T0547 151 :HNITLTIEG 1zs9A 205 :NNILFLTDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32790 # 2carA.151.9 read from T0547.t2k.many.frag # found chain 2carA in training set Warning: unaligning (T0547)N152 (2carA)K9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I157 (2carA)T14 because Y (epsilon') conformation "forbidden" or filtered. T0547 151 :H 2carA 8 :K T0547 153 :ITLT 2carA 10 :IVFV T0547 158 :EG 2carA 15 :GN Number of specific fragments extracted= 3 number of extra gaps= 2 total=32793 # 2b9eA.151.125 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 151 :HNITLTIEG 2b9eA 252 :GKIFAFDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32794 # 1vqoL.151.116 read from T0547.t2k.many.frag # found chain 1vqoL in template set Warning: unaligning (T0547)G159 (1vqoL)D124 because Y (epsilon') conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1vqoL 116 :HELTLIAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=32795 # 1usgA.151.138 read from T0547.t2k.many.frag # found chain 1usgA in training set T0547 151 :HNITLTIEG 1usgA 139 :QRIAIIHDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32796 # 1zcjA.151.60 read from T0547.t2k.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)G159 (1zcjA)D328 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1zcjA 320 :ISVVAVES Number of specific fragments extracted= 1 number of extra gaps= 1 total=32797 # 1rifA.151.157 read from T0547.t2k.many.frag # found chain 1rifA in template set T0547 151 :HNITLTIEG 1rifA 158 :GKILIIVPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32798 # 1xgkA.151.29 read from T0547.t2k.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)G159 (1xgkA)S38 because E (beta_S) conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1xgkA 30 :HHVRAQVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=32799 # 1ee6A.151.138 read from T0547.t2k.many.frag # found chain 1ee6A in template set T0547 151 :HNITLTIEG 1ee6A 139 :YKVVMNVEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=32800 # 1y5mA.151.42 read from T0547.t2k.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)I157 (1y5mA)A65 because Y (epsilon') conformation "forbidden" or filtered. T0547 151 :HNITLT 1y5mA 59 :AHVVLT T0547 158 :EG 1y5mA 66 :RS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32802 # 1xmxA.151.27 read from T0547.t2k.many.frag # found chain 1xmxA in template set Warning: unaligning (T0547)E158 (1xmxA)G33 because Y (epsilon') conformation "forbidden" or filtered. T0547 151 :HNITLTI 1xmxA 26 :SRHIIFI T0547 159 :G 1xmxA 34 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=32804 # 1jr2A.151.157 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G159 (1jr2A)N145 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1jr2A 137 :LPLLFPCG Number of specific fragments extracted= 1 number of extra gaps= 1 total=32805 # 1xdpA.151.392 read from T0547.t2k.many.frag # found chain 1xdpA in template set Warning: unaligning (T0547)G159 (1xdpA)L402 because G (3-10) conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1xdpA 394 :KKVTVVVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=32806 1dkmA expands to /projects/compbio/data/pdb/1dkm.pdb.gz 1dkmA:# 1dkmA.151.80 read from T0547.t2k.many.frag # adding 1dkmA to template set # found chain 1dkmA in template set Warning: unaligning (T0547)E158 (1dkmA)D88 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :HNITLTI 1dkmA 81 :GQVAIIA T0547 159 :G 1dkmA 89 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=32808 # 1gu7A.152.193 read from T0547.t2k.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)N152 (1gu7A)N216 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E158 (1gu7A)R222 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1gu7A)D223 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTI 1gu7A 217 :SISVI T0547 160 :L 1gu7A 224 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=32810 # 1hdoA.152.28 read from T0547.t2k.many.frag # found chain 1hdoA in training set T0547 152 :NITLTIEGL 1hdoA 29 :EVTVLVRDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32811 # 1pii.152.158 read from T0547.t2k.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G159 (1pii)N166 because Y (epsilon') conformation "forbidden" or filtered. T0547 152 :NITLTIE 1pii 159 :GVLTEVS T0547 160 :L 1pii 167 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=32813 # 1y1pA.152.36 read from T0547.t2k.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G159 (1y1pA)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 152 :NITLTIE 1y1pA 38 :KVRGTAR T0547 160 :L 1y1pA 46 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=32815 # 1zs9A.152.205 read from T0547.t2k.many.frag # found chain 1zs9A in training set Warning: unaligning (T0547)N152 (1zs9A)N206 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1zs9A)V213 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1zs9A 207 :ILFLTD T0547 160 :L 1zs9A 214 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=32817 # 2fcjA.152.4 read from T0547.t2k.many.frag # found chain 2fcjA in training set T0547 152 :NITLTIEGL 2fcjA 5 :EKVIIVEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32818 # 1yrbA.152.138 read from T0547.t2k.many.frag # found chain 1yrbA in training set T0547 152 :NITLTIEGL 1yrbA 125 :PLVVYISDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=32819 # 1r12A.152.153 read from T0547.t2k.many.frag # found chain 1r12A in training set Warning: unaligning (T0547)G159 (1r12A)G161 because G (3-10) conformation "forbidden" or filtered. T0547 152 :NITLTIE 1r12A 154 :EVTYMVD T0547 160 :L 1r12A 162 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=32821 # 2carA.152.10 read from T0547.t2k.many.frag # found chain 2carA in training set Warning: unaligning (T0547)G159 (2carA)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 152 :NITLTIE 2carA 9 :KIVFVTG T0547 160 :L 2carA 17 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=32823 # 1jayA.152.25 read from T0547.t2k.many.frag # found chain 1jayA in training set T0547 152 :NITLTIEGL 1jayA 26 :EIVVGSRRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32824 # 1tt7A.152.176 read from T0547.t2k.many.frag # found chain 1tt7A in template set Warning: unaligning (T0547)T154 (1tt7A)V179 because D (zeta) conformation "forbidden" or filtered. T0547 152 :NI 1tt7A 177 :DV T0547 155 :LTIEGL 1tt7A 180 :ASTGNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32826 # 1pea.152.141 read from T0547.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0547)L160 (1pea)Y150 because Y (epsilon') conformation "forbidden" or filtered. T0547 152 :NITLTIEG 1pea 142 :RVVFIGSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=32827 # 1jg1A.152.115 read from T0547.t2k.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)N152 (1jg1A)D116 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIEGL 1jg1A 117 :VYTIERIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=32828 # 1oxxK.152.192 read from T0547.t2k.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)G159 (1oxxK)D200 because P (beta_P) conformation "forbidden" or filtered. T0547 152 :NITLTIE 1oxxK 193 :TLLVVSH T0547 160 :L 1oxxK 201 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=32830 # 1i24A.152.36 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 152 :NITLTIEGL 1i24A 27 :EVCIVDNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32831 # 1usgA.152.139 read from T0547.t2k.many.frag # found chain 1usgA in training set T0547 152 :NITLTIEGL 1usgA 140 :RIAIIHDKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32832 1em8A expands to /projects/compbio/data/pdb/1em8.pdb.gz 1em8A:# 1em8A.152.37 read from T0547.t2k.many.frag # adding 1em8A to template set # found chain 1em8A in template set T0547 152 :NITLTIEGL 1em8A 38 :RVLIACEDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32833 # 1jr2A.152.158 read from T0547.t2k.many.frag # found chain 1jr2A in template set T0547 152 :NITLTIEGL 1jr2A 138 :PLLFPCGNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32834 # 1j0dA.152.93 read from T0547.t2k.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)G159 (1j0dA)D101 because N (gamma') conformation "forbidden" or filtered. T0547 152 :NITLTIE 1j0dA 94 :KCVLIQE T0547 160 :L 1j0dA 102 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=32836 # 1wuiS.152.68 read from T0547.t2k.many.frag # found chain 1wuiS in training set Warning: unaligning (T0547)E158 (1wuiS)E75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1wuiS)G76 because S (epsilon) conformation "forbidden" or filtered. T0547 152 :NITLTI 1wuiS 69 :GFIAVV T0547 160 :L 1wuiS 77 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=32838 # 1zcjA.152.61 read from T0547.t2k.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)N152 (1zcjA)S321 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIEGL 1zcjA 322 :VVAVESDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=32839 # 1ee6A.152.139 read from T0547.t2k.many.frag # found chain 1ee6A in template set T0547 152 :NITLTIEGL 1ee6A 140 :KVVMNVENC Number of specific fragments extracted= 1 number of extra gaps= 0 total=32840 # 2b9eA.152.126 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)G159 (2b9eA)D260 because N (gamma') conformation "forbidden" or filtered. T0547 152 :NITLTIE 2b9eA 253 :KIFAFDL T0547 160 :L 2b9eA 261 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=32842 # 1j9lA.152.27 read from T0547.t2k.many.frag # found chain 1j9lA in template set Warning: unaligning (T0547)G159 (1j9lA)D35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L160 (1j9lA)K36 because Y (epsilon') conformation "forbidden" or filtered. T0547 152 :NITLTIE 1j9lA 28 :EVFVVAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=32843 2b7nA expands to /projects/compbio/data/pdb/2b7n.pdb.gz 2b7nA:# 2b7nA.152.183 read from T0547.t2k.many.frag # adding 2b7nA to template set # found chain 2b7nA in template set T0547 152 :NITLTIEGL 2b7nA 184 :KIEIECESF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32844 # 1dkmA.152.81 read from T0547.t2k.many.frag # found chain 1dkmA in template set T0547 152 :NITLTIEGL 1dkmA 82 :QVAIIADVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32845 # 1y5mA.152.43 read from T0547.t2k.many.frag # found chain 1y5mA in template set T0547 152 :NITLTIEGL 1y5mA 60 :HVVLTARSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32846 # 1rifA.152.158 read from T0547.t2k.many.frag # found chain 1rifA in template set T0547 152 :NITLTIEGL 1rifA 159 :KILIIVPTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32847 # 2ahrA.152.27 read from T0547.t2k.many.frag # found chain 2ahrA in template set Warning: unaligning (T0547)G159 (2ahrA)S32 because Y (epsilon') conformation "forbidden" or filtered. T0547 152 :NITLTIE 2ahrA 25 :ELIISGS T0547 160 :L 2ahrA 33 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=32849 # 1xgkA.152.30 read from T0547.t2k.many.frag # found chain 1xgkA in training set T0547 152 :NITLTIEGL 1xgkA 31 :HVRAQVHSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32850 # 1hdoA.153.29 read from T0547.t2k.many.frag # found chain 1hdoA in training set Warning: unaligning (T0547)G159 (1hdoA)D36 because D (zeta) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1hdoA 30 :VTVLVR T0547 160 :LN 1hdoA 37 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32852 # 2fcjA.153.5 read from T0547.t2k.many.frag # found chain 2fcjA in training set T0547 153 :ITLTIEGLN 2fcjA 6 :KVIIVEGRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32853 # 1gu7A.153.194 read from T0547.t2k.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)G159 (1gu7A)D223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L160 (1gu7A)R224 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLTIE 1gu7A 217 :SISVIR T0547 161 :N 1gu7A 225 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=32855 # 1zs9A.153.206 read from T0547.t2k.many.frag # found chain 1zs9A in training set Warning: unaligning (T0547)G159 (1zs9A)V213 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1zs9A 207 :ILFLTD T0547 160 :LN 1zs9A 214 :TR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32857 # 1usgA.153.140 read from T0547.t2k.many.frag # found chain 1usgA in training set Warning: unaligning (T0547)I157 (1usgA)H145 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLT 1usgA 141 :IAII T0547 158 :EGLN 1usgA 146 :DKQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=32859 # 1em8A.153.38 read from T0547.t2k.many.frag # found chain 1em8A in template set T0547 153 :ITLTIEGLN 1em8A 39 :VLIACEDEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32860 # 1tt7A.153.177 read from T0547.t2k.many.frag # found chain 1tt7A in template set Warning: unaligning (T0547)N161 (1tt7A)E186 because T (delta_L) conformation "forbidden" or filtered. T0547 153 :ITLTIEGL 1tt7A 178 :VVASTGNR Number of specific fragments extracted= 1 number of extra gaps= 1 total=32861 # 1y1pA.153.37 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 153 :ITLTIEGLN 1y1pA 39 :VRGTARSAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32862 # 1jg1A.153.116 read from T0547.t2k.many.frag # found chain 1jg1A in training set T0547 153 :ITLTIEGLN 1jg1A 117 :VYTIERIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32863 # 1pii.153.159 read from T0547.t2k.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G159 (1pii)N166 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLTIE 1pii 160 :VLTEVS T0547 160 :LN 1pii 167 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32865 # 1yrbA.153.139 read from T0547.t2k.many.frag # found chain 1yrbA in training set Warning: unaligning (T0547)E158 (1yrbA)S131 because E (beta_S) conformation "forbidden" or filtered. T0547 153 :ITLTI 1yrbA 126 :LVVYI T0547 159 :GLN 1yrbA 132 :DPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32867 2b4aA expands to /projects/compbio/data/pdb/2b4a.pdb.gz 2b4aA:# 2b4aA.153.17 read from T0547.t2k.many.frag # adding 2b4aA to template set # found chain 2b4aA in template set T0547 153 :ITLTIEGLN 2b4aA 6 :VTLVEDEPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32868 # 1pea.153.142 read from T0547.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0547)L160 (1pea)Y150 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLTIEG 1pea 143 :VVFIGSD T0547 161 :N 1pea 151 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=32870 # 2carA.153.11 read from T0547.t2k.many.frag # found chain 2carA in training set Warning: unaligning (T0547)G159 (2carA)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLTIE 2carA 10 :IVFVTG T0547 160 :LN 2carA 17 :AK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32872 # 1jr2A.153.159 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)L155 (1jr2A)F141 because D (zeta) conformation "forbidden" or filtered. T0547 153 :IT 1jr2A 139 :LL T0547 156 :TIEGLN 1jr2A 142 :PCGNLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32874 # 1dkmA.153.82 read from T0547.t2k.many.frag # found chain 1dkmA in template set T0547 153 :ITLTIEGLN 1dkmA 83 :VAIIADVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32875 # 1v96A.153.109 read from T0547.t2k.many.frag # found chain 1v96A in training set T0547 153 :ITLTIEGLN 1v96A 110 :SLLVTDDPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32876 # 1oxxK.153.193 read from T0547.t2k.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)G159 (1oxxK)D200 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1oxxK 194 :LLVVSH T0547 160 :LN 1oxxK 201 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32878 # 1jayA.153.26 read from T0547.t2k.many.frag # found chain 1jayA in training set T0547 153 :ITLTIEGLN 1jayA 27 :IVVGSRREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32879 # 2b7nA.153.184 read from T0547.t2k.many.frag # found chain 2b7nA in template set T0547 153 :ITLTIEGLN 2b7nA 185 :IEIECESFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32880 # 2tpsA.153.79 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)E158 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)D94 Warning: unaligning (T0547)G159 because of BadResidue code BAD_PEPTIDE at template residue (2tpsA)D94 T0547 153 :ITLTI 2tpsA 88 :PFIVN T0547 160 :LN 2tpsA 95 :VE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32882 # 1zcjA.153.62 read from T0547.t2k.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)G159 (1zcjA)D328 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1zcjA 322 :VVAVES T0547 160 :LN 1zcjA 329 :PK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32884 # 1rifA.153.159 read from T0547.t2k.many.frag # found chain 1rifA in template set Warning: unaligning (T0547)G159 (1rifA)T166 because E (beta_S) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1rifA 160 :ILIIVP T0547 160 :LN 1rifA 167 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32886 # 7odcA.153.128 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G159 (7odcA)S135 because E (beta_S) conformation "forbidden" or filtered. T0547 153 :ITLTIE 7odcA 129 :QMMTFD T0547 160 :LN 7odcA 136 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32888 # 1r12A.153.154 read from T0547.t2k.many.frag # found chain 1r12A in training set Warning: unaligning (T0547)G159 (1r12A)G161 because G (3-10) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1r12A 155 :VTYMVD T0547 160 :LN 1r12A 162 :SN Number of specific fragments extracted= 2 number of extra gaps= 1 total=32890 2b0cA expands to /projects/compbio/data/pdb/2b0c.pdb.gz 2b0cA:# 2b0cA.153.167 read from T0547.t2k.many.frag # adding 2b0cA to template set # found chain 2b0cA in template set Warning: unaligning (T0547)G159 (2b0cA)N174 because E (beta_S) conformation "forbidden" or filtered. T0547 153 :ITLTIE 2b0cA 168 :TVFFDD T0547 160 :LN 2b0cA 175 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=32892 # 2dpmA.153.56 read from T0547.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)E158 (2dpmA)D62 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLTI 2dpmA 57 :DAVIN T0547 159 :GLN 2dpmA 63 :FNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32894 # 1jbeA.153.6 read from T0547.t2k.many.frag # found chain 1jbeA in training set T0547 153 :ITLTIEGLN 1jbeA 8 :FLVVDDFST Number of specific fragments extracted= 1 number of extra gaps= 0 total=32895 # 2b9eA.153.127 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)I157 (2b9eA)D258 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (2b9eA)D260 because N (gamma') conformation "forbidden" or filtered. T0547 153 :ITLT 2b9eA 254 :IFAF T0547 158 :E 2b9eA 259 :L T0547 160 :LN 2b9eA 261 :AK Number of specific fragments extracted= 3 number of extra gaps= 2 total=32898 1rlzA expands to /projects/compbio/data/pdb/1rlz.pdb.gz 1rlzA:# 1rlzA.153.276 read from T0547.t2k.many.frag # adding 1rlzA to template set # found chain 1rlzA in template set Warning: unaligning (T0547)E158 (1rlzA)G282 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)L160 (1rlzA)G284 because S (epsilon) conformation "forbidden" or filtered. T0547 153 :ITLTI 1rlzA 277 :GMIIL T0547 159 :G 1rlzA 283 :G T0547 161 :N 1rlzA 285 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=32901 # 7odcA.154.129 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 154 :TLTIEGLNE 7odcA 130 :MMTFDSEIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32902 # 2fcjA.154.6 read from T0547.t2k.many.frag # found chain 2fcjA in training set T0547 154 :TLTIEGLNE 2fcjA 7 :VIIVEGRSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32903 1wyzA expands to /projects/compbio/data/pdb/1wyz.pdb.gz 1wyzA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wyzA.154.33 read from T0547.t2k.many.frag # adding 1wyzA to template set # found chain 1wyzA in template set T0547 154 :TLTIEGLNE 1wyzA 34 :HFIVEDVRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32904 # 1usgA.154.141 read from T0547.t2k.many.frag # found chain 1usgA in training set T0547 154 :TLTIEGLNE 1usgA 142 :AIIHDKQQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32905 # 1gu7A.154.195 read from T0547.t2k.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)G159 (1gu7A)D223 because P (beta_P) conformation "forbidden" or filtered. T0547 154 :TLTIE 1gu7A 218 :ISVIR T0547 160 :LNE 1gu7A 224 :RPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=32907 # 1v96A.154.110 read from T0547.t2k.many.frag # found chain 1v96A in training set Warning: unaligning (T0547)I157 (1v96A)T114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1v96A)D116 because D (zeta) conformation "forbidden" or filtered. T0547 154 :TLT 1v96A 111 :LLV T0547 158 :E 1v96A 115 :D T0547 160 :LNE 1v96A 117 :PKR Number of specific fragments extracted= 3 number of extra gaps= 2 total=32910 # 1y1pA.154.38 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 154 :TLTIEGLNE 1y1pA 40 :RGTARSASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32911 # 1hdoA.154.30 read from T0547.t2k.many.frag # found chain 1hdoA in training set Warning: unaligning (T0547)G159 (1hdoA)D36 because D (zeta) conformation "forbidden" or filtered. T0547 154 :TLTIE 1hdoA 31 :TVLVR T0547 160 :LNE 1hdoA 37 :SSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32913 # 1yrbA.154.140 read from T0547.t2k.many.frag # found chain 1yrbA in training set Warning: unaligning (T0547)E158 (1yrbA)S131 because E (beta_S) conformation "forbidden" or filtered. T0547 154 :TLTI 1yrbA 127 :VVYI T0547 159 :GLNE 1yrbA 132 :DPEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32915 # 1knwA.154.117 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G159 (1knwA)S123 because E (beta_S) conformation "forbidden" or filtered. T0547 154 :TLTIE 1knwA 118 :PVNAG T0547 160 :LNE 1knwA 124 :VDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=32917 # 1pii.154.160 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 154 :TLTIEGLNE 1pii 161 :LTEVSNEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32918 # 1wn2A.154.58 read from T0547.t2k.many.frag # found chain 1wn2A in training set T0547 154 :TLTIEGLNE 1wn2A 59 :VVKVESEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32919 # 1pea.154.143 read from T0547.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0547)G159 (1pea)D149 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)L160 (1pea)Y150 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTIE 1pea 144 :VFIGS T0547 161 :NE 1pea 151 :IY Number of specific fragments extracted= 2 number of extra gaps= 1 total=32921 # 1em8A.154.39 read from T0547.t2k.many.frag # found chain 1em8A in template set T0547 154 :TLTIEGLNE 1em8A 40 :LIACEDEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32922 # 1rcqA.154.95 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 154 :TLTIEGLNE 1rcqA 96 :WCVVHCAWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32923 # 1vkfA.154.85 read from T0547.t2k.many.frag # found chain 1vkfA in training set Warning: unaligning (T0547)T154 (1vkfA)G74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I157 (1vkfA)T77 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LT 1vkfA 75 :II T0547 158 :EGLNE 1vkfA 78 :IKPKN Number of specific fragments extracted= 2 number of extra gaps= 2 total=32925 # 1o08A.154.184 read from T0547.t2k.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)E158 (1o08A)G1189 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTI 1o08A 1185 :PIGV T0547 159 :GLNE 1o08A 1190 :RPED Number of specific fragments extracted= 2 number of extra gaps= 1 total=32927 # 2b4aA.154.18 read from T0547.t2k.many.frag # found chain 2b4aA in template set T0547 154 :TLTIEGLNE 2b4aA 7 :TLVEDEPSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=32928 1jqnA expands to /projects/compbio/data/pdb/1jqn.pdb.gz 1jqnA:# 1jqnA.154.501 read from T0547.t2k.many.frag # adding 1jqnA to template set # found chain 1jqnA in template set T0547 154 :TLTIEGLNE 1jqnA 502 :APLFETLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32929 # 1dg9A.154.86 read from T0547.t2k.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)G159 (1dg9A)D92 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTIE 1dg9A 87 :YILCM T0547 160 :LNE 1dg9A 93 :ESN Number of specific fragments extracted= 2 number of extra gaps= 1 total=32931 # 2b7nA.154.185 read from T0547.t2k.many.frag # found chain 2b7nA in template set T0547 154 :TLTIEGLNE 2b7nA 186 :EIECESFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32932 # 1lyvA.154.119 read from T0547.t2k.many.frag # found chain 1lyvA in training set Warning: unaligning (T0547)E158 (1lyvA)A286 because P (beta_P) conformation "forbidden" or filtered. T0547 154 :TLTI 1lyvA 282 :LAVL T0547 159 :GLNE 1lyvA 287 :SSSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32934 # 1rjdA.154.123 read from T0547.t2k.many.frag # found chain 1rjdA in training set Warning: unaligning (T0547)G159 (1rjdA)Y129 because P (beta_P) conformation "forbidden" or filtered. T0547 154 :TLTIE 1rjdA 124 :YVDID T0547 160 :LNE 1rjdA 130 :NES Number of specific fragments extracted= 2 number of extra gaps= 1 total=32936 # 1o7qA.154.84 read from T0547.t2k.many.frag # found chain 1o7qA in training set Warning: unaligning (T0547)G159 (1o7qA)D169 because D (zeta) conformation "forbidden" or filtered. T0547 154 :TLTIE 1o7qA 164 :YIMVD T0547 160 :LNE 1o7qA 170 :VSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32938 # 1a8y.154.126 read from T0547.t2k.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)G159 (1a8y)G132 because S (epsilon) conformation "forbidden" or filtered. T0547 154 :TLTIE 1a8y 127 :VELIE T0547 160 :LNE 1a8y 133 :ERE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32940 # 2carA.154.12 read from T0547.t2k.many.frag # found chain 2carA in training set T0547 154 :TLTIEGLNE 2carA 11 :VFVTGNAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32941 # 1jr2A.154.160 read from T0547.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G159 (1jr2A)N145 because P (beta_P) conformation "forbidden" or filtered. T0547 154 :TLTIE 1jr2A 140 :LFPCG T0547 160 :LNE 1jr2A 146 :LKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32943 # 1zs9A.154.207 read from T0547.t2k.many.frag # found chain 1zs9A in training set T0547 154 :TLTIEGLNE 1zs9A 208 :LFLTDVTRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32944 # 1k7jA.154.65 read from T0547.t2k.many.frag # found chain 1k7jA in training set T0547 154 :TLTIEGLNE 1k7jA 66 :TLMCRDLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32945 # 1wiwA.154.217 read from T0547.t2k.many.frag # found chain 1wiwA in template set Warning: unaligning (T0547)G159 (1wiwA)P223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L160 (1wiwA)G224 because S (epsilon) conformation "forbidden" or filtered. T0547 154 :TLTIE 1wiwA 218 :AVLLG T0547 161 :NE 1wiwA 225 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32947 # 7odcA.155.130 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 155 :LTIEGLNEL 7odcA 131 :MTFDSEIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32948 # 1wn2A.155.59 read from T0547.t2k.many.frag # found chain 1wn2A in training set Warning: unaligning (T0547)G159 (1wn2A)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LTIE 1wn2A 60 :VKVE T0547 160 :LNEL 1wn2A 65 :EEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32950 # 1knwA.155.118 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 155 :LTIEGLNEL 1knwA 119 :VNAGSVDML Number of specific fragments extracted= 1 number of extra gaps= 0 total=32951 # 1em8A.155.40 read from T0547.t2k.many.frag # found chain 1em8A in template set T0547 155 :LTIEGLNEL 1em8A 41 :IACEDEKQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32952 # 1rjdA.155.124 read from T0547.t2k.many.frag # found chain 1rjdA in training set Warning: unaligning (T0547)E158 (1rjdA)D128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1rjdA)Y129 because P (beta_P) conformation "forbidden" or filtered. T0547 155 :LTI 1rjdA 125 :VDI T0547 160 :LNEL 1rjdA 130 :NESV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32954 # 1v96A.155.111 read from T0547.t2k.many.frag # found chain 1v96A in training set Warning: unaligning (T0547)G159 (1v96A)D116 because D (zeta) conformation "forbidden" or filtered. T0547 155 :LTIE 1v96A 112 :LVTD T0547 160 :LNEL 1v96A 117 :PKRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=32956 # 1y1pA.155.39 read from T0547.t2k.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)I157 (1y1pA)A43 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LT 1y1pA 41 :GT T0547 158 :EGLNEL 1y1pA 44 :RSASKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32958 # 2b4aA.155.19 read from T0547.t2k.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)G159 (2b4aA)E12 because P (beta_P) conformation "forbidden" or filtered. T0547 155 :LTIE 2b4aA 8 :LVED T0547 160 :LNEL 2b4aA 13 :PSHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32960 # 2b7nA.155.186 read from T0547.t2k.many.frag # found chain 2b7nA in template set Warning: unaligning (T0547)G159 (2b7nA)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LTIE 2b7nA 187 :IECE T0547 160 :LNEL 2b7nA 192 :FEEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32962 # 2carA.155.13 read from T0547.t2k.many.frag # found chain 2carA in training set T0547 155 :LTIEGLNEL 2carA 12 :FVTGNAKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32963 # 1jqnA.155.502 read from T0547.t2k.many.frag # found chain 1jqnA in template set T0547 155 :LTIEGLNEL 1jqnA 503 :PLFETLDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32964 # 1usgA.155.142 read from T0547.t2k.many.frag # found chain 1usgA in training set T0547 155 :LTIEGLNEL 1usgA 143 :IIHDKQQYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32965 # 1lyvA.155.120 read from T0547.t2k.many.frag # found chain 1lyvA in training set T0547 155 :LTIEGLNEL 1lyvA 283 :AVLASSSEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32966 # 1ct5A.155.110 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)T156 (1ct5A)T113 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1ct5A)S116 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :L 1ct5A 112 :E T0547 157 :IE 1ct5A 114 :ID T0547 160 :LNEL 1ct5A 117 :LKKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=32969 # 1k7jA.155.66 read from T0547.t2k.many.frag # found chain 1k7jA in training set Warning: unaligning (T0547)G159 (1k7jA)D71 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LTIE 1k7jA 67 :LMCR T0547 160 :LNEL 1k7jA 72 :LSEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32971 # 1a8y.155.127 read from T0547.t2k.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)E158 (1a8y)E131 because D (zeta) conformation "forbidden" or filtered. T0547 155 :LTI 1a8y 128 :ELI T0547 159 :GLNEL 1a8y 132 :GEREL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32973 # 1vkfA.155.86 read from T0547.t2k.many.frag # found chain 1vkfA in training set Warning: unaligning (T0547)G159 (1vkfA)K79 because N (gamma') conformation "forbidden" or filtered. T0547 155 :LTIE 1vkfA 75 :IITI T0547 160 :LNEL 1vkfA 80 :PKNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=32975 # 1wyzA.155.34 read from T0547.t2k.many.frag # found chain 1wyzA in template set T0547 155 :LTIEGLNEL 1wyzA 35 :FIVEDVRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32976 # 1o08A.155.185 read from T0547.t2k.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)E158 (1o08A)G1189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1o08A)R1190 because P (beta_P) conformation "forbidden" or filtered. T0547 155 :LTI 1o08A 1186 :IGV T0547 160 :LNEL 1o08A 1191 :PEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32978 # 1gxjA.155.60 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 155 :LTIEGLNEL 1gxjA 545 :IVVRNVDTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32979 # 1pii.155.161 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 155 :LTIEGLNEL 1pii 162 :TEVSNEEEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32980 # 2fcjA.155.7 read from T0547.t2k.many.frag # found chain 2fcjA in training set T0547 155 :LTIEGLNEL 2fcjA 8 :IIVEGRSDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32981 # 2bz1A.155.146 read from T0547.t2k.many.frag # found chain 2bz1A in training set T0547 155 :LTIEGLNEL 2bz1A 147 :LLTNNPKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32982 # 1zs9A.155.208 read from T0547.t2k.many.frag # found chain 1zs9A in training set T0547 155 :LTIEGLNEL 1zs9A 209 :FLTDVTREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32983 # 1zcjA.155.64 read from T0547.t2k.many.frag # found chain 1zcjA in template set T0547 155 :LTIEGLNEL 1zcjA 324 :AVESDPKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32984 # 1pea.155.144 read from T0547.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0547)L160 (1pea)Y150 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LTIEG 1pea 145 :FIGSD T0547 161 :NEL 1pea 151 :IYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=32986 # 1vhuA.155.181 read from T0547.t2k.many.frag # found chain 1vhuA in training set T0547 155 :LTIEGLNEL 1vhuA 180 :LVIYDRKSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32987 # 1oxxK.155.195 read from T0547.t2k.many.frag # found chain 1oxxK in training set T0547 155 :LTIEGLNEL 1oxxK 196 :VVSHDPADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32988 # 2tpsA.155.81 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)E158 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)D94 Warning: unaligning (T0547)G159 because of BadResidue code BAD_PEPTIDE at template residue (2tpsA)D94 T0547 155 :LTI 2tpsA 90 :IVN T0547 160 :LNEL 2tpsA 95 :VELA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32990 # 1rcqA.155.96 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 155 :LTIEGLNEL 1rcqA 97 :CVVHCAWQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32991 # 1knwA.156.119 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G159 (1knwA)S123 because E (beta_S) conformation "forbidden" or filtered. T0547 156 :TIE 1knwA 120 :NAG T0547 160 :LNELE 1knwA 124 :VDMLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=32993 # 7odcA.156.131 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 156 :TIEGLNELE 7odcA 132 :TFDSEIELM Number of specific fragments extracted= 1 number of extra gaps= 0 total=32994 # 1wn2A.156.60 read from T0547.t2k.many.frag # found chain 1wn2A in training set T0547 156 :TIEGLNELE 1wn2A 61 :KVESEEELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32995 # 1jqnA.156.503 read from T0547.t2k.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)G159 (1jqnA)T507 because E (beta_S) conformation "forbidden" or filtered. T0547 156 :TIE 1jqnA 504 :LFE T0547 160 :LNELE 1jqnA 508 :LDDLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=32997 # 2b7nA.156.187 read from T0547.t2k.many.frag # found chain 2b7nA in template set Warning: unaligning (T0547)G159 (2b7nA)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 2b7nA 188 :ECE T0547 160 :LNELE 2b7nA 192 :FEEAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32999 # 1y1pA.156.40 read from T0547.t2k.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G159 (1y1pA)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 1y1pA 42 :TAR T0547 160 :LNELE 1y1pA 46 :ASKLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33001 # 1pii.156.162 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 156 :TIEGLNELE 1pii 163 :EVSNEEEQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33002 # 1lyvA.156.121 read from T0547.t2k.many.frag # found chain 1lyvA in training set T0547 156 :TIEGLNELE 1lyvA 284 :VLASSSEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33003 # 1ct5A.156.111 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)T156 (1ct5A)T113 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1ct5A)S116 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1ct5A 114 :ID T0547 160 :LNELE 1ct5A 117 :LKKAK Number of specific fragments extracted= 2 number of extra gaps= 2 total=33005 # 2b4aA.156.20 read from T0547.t2k.many.frag # found chain 2b4aA in template set T0547 156 :TIEGLNELE 2b4aA 9 :VEDEPSHAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33006 # 2carA.156.14 read from T0547.t2k.many.frag # found chain 2carA in training set T0547 156 :TIEGLNELE 2carA 13 :VTGNAKKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33007 # 1em8A.156.41 read from T0547.t2k.many.frag # found chain 1em8A in template set T0547 156 :TIEGLNELE 1em8A 42 :ACEDEKQAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33008 # 1wiwA.156.219 read from T0547.t2k.many.frag # found chain 1wiwA in template set Warning: unaligning (T0547)G159 (1wiwA)P223 because P (beta_P) conformation "forbidden" or filtered. T0547 156 :TIE 1wiwA 220 :LLG T0547 160 :LNELE 1wiwA 224 :GEEAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33010 # 1gxjA.156.61 read from T0547.t2k.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G159 (1gxjA)N549 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 1gxjA 546 :VVR T0547 160 :LNELE 1gxjA 550 :VDTAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=33012 # 1a8y.156.128 read from T0547.t2k.many.frag # found chain 1a8y in template set T0547 156 :TIEGLNELE 1a8y 129 :LIEGERELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33013 # 1vkfA.156.87 read from T0547.t2k.many.frag # found chain 1vkfA in training set T0547 156 :TIEGLNELE 1vkfA 76 :ITIKPKNYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33014 # 1k7jA.156.67 read from T0547.t2k.many.frag # found chain 1k7jA in training set Warning: unaligning (T0547)G159 (1k7jA)D71 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 1k7jA 68 :MCR T0547 160 :LNELE 1k7jA 72 :LSELS Number of specific fragments extracted= 2 number of extra gaps= 1 total=33016 # 2absA.156.112 read from T0547.t2k.many.frag # found chain 2absA in training set T0547 156 :TIEGLNELE 2absA 93 :AIGDDPRGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33017 # 1rcqA.156.97 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 156 :TIEGLNELE 1rcqA 98 :VVHCAWQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33018 # 2bz1A.156.147 read from T0547.t2k.many.frag # found chain 2bz1A in training set T0547 156 :TIEGLNELE 2bz1A 148 :LTNNPKKVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33019 # 1dg9A.156.88 read from T0547.t2k.many.frag # found chain 1dg9A in template set T0547 156 :TIEGLNELE 1dg9A 89 :LCMDESNLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33020 # 1zcjA.156.65 read from T0547.t2k.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)G159 (1zcjA)D328 because P (beta_P) conformation "forbidden" or filtered. T0547 156 :TIE 1zcjA 325 :VES T0547 160 :LNELE 1zcjA 329 :PKQLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=33022 # 2b9eA.156.130 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)G159 (2b9eA)D260 because N (gamma') conformation "forbidden" or filtered. T0547 156 :TIE 2b9eA 257 :FDL T0547 160 :LNELE 2b9eA 261 :AKRLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33024 # 1usgA.156.143 read from T0547.t2k.many.frag # found chain 1usgA in training set T0547 156 :TIEGLNELE 1usgA 144 :IHDKQQYGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33025 # 1vhuA.156.182 read from T0547.t2k.many.frag # found chain 1vhuA in training set T0547 156 :TIEGLNELE 1vhuA 181 :VIYDRKSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33026 # 1jayA.156.29 read from T0547.t2k.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)G159 (1jayA)R33 because E (beta_S) conformation "forbidden" or filtered. T0547 156 :TIE 1jayA 30 :GSR T0547 160 :LNELE 1jayA 34 :EEKAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33028 # 1iuqA.156.111 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 156 :TIEGLNELE 1iuqA 113 :FVGNLSLFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33029 # 2bh1X.156.64 read from T0547.t2k.many.frag # found chain 2bh1X in template set T0547 156 :TIEGLNELE 2bh1X 65 :IELSQAEFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33030 # 1in0A.156.50 read from T0547.t2k.many.frag # found chain 1in0A in template set T0547 156 :TIEGLNELE 1in0A 51 :TTESDFQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33031 # 1ub0A.156.133 read from T0547.t2k.many.frag # found chain 1ub0A in template set Warning: unaligning (T0547)G159 (1ub0A)N137 because P (beta_P) conformation "forbidden" or filtered. T0547 156 :TIE 1ub0A 134 :VTP T0547 160 :LNELE 1ub0A 138 :RLEAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33033 # 2b7nA.157.188 read from T0547.t2k.many.frag # found chain 2b7nA in template set T0547 157 :IEGLNELEA 2b7nA 189 :CESFEEAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33034 # 1wiwA.157.220 read from T0547.t2k.many.frag # found chain 1wiwA in template set Warning: unaligning (T0547)E158 (1wiwA)G222 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1wiwA)P223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L160 (1wiwA)G224 because S (epsilon) conformation "forbidden" or filtered. T0547 157 :I 1wiwA 221 :L T0547 161 :NELEA 1wiwA 225 :EEAAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33036 # 1wn2A.157.61 read from T0547.t2k.many.frag # found chain 1wn2A in training set Warning: unaligning (T0547)G159 (1wn2A)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1wn2A 62 :VE T0547 160 :LNELEA 1wn2A 65 :EEELFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=33038 # 1knwA.157.120 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G159 (1knwA)S123 because E (beta_S) conformation "forbidden" or filtered. T0547 157 :IE 1knwA 121 :AG T0547 160 :LNELEA 1knwA 124 :VDMLDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=33040 # 1jqnA.157.504 read from T0547.t2k.many.frag # found chain 1jqnA in template set T0547 157 :IEGLNELEA 1jqnA 505 :FETLDDLNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33041 # 1ct5A.157.112 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G159 (1ct5A)S116 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1ct5A 114 :ID T0547 160 :LNELEA 1ct5A 117 :LKKAKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=33043 # 2b4aA.157.21 read from T0547.t2k.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)G159 (2b4aA)E12 because P (beta_P) conformation "forbidden" or filtered. T0547 157 :IE 2b4aA 10 :ED T0547 160 :LNELEA 2b4aA 13 :PSHATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33045 # 2carA.157.15 read from T0547.t2k.many.frag # found chain 2carA in training set Warning: unaligning (T0547)G159 (2carA)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 2carA 14 :TG T0547 160 :LNELEA 2carA 17 :AKKLEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33047 # 7odcA.157.132 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I157 (7odcA)F133 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (7odcA)S135 because E (beta_S) conformation "forbidden" or filtered. T0547 158 :E 7odcA 134 :D T0547 160 :LNELEA 7odcA 136 :EIELMK Number of specific fragments extracted= 2 number of extra gaps= 2 total=33049 # 1y1pA.157.41 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 157 :IEGLNELEA 1y1pA 43 :ARSASKLAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33050 # 1gxjA.157.62 read from T0547.t2k.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G159 (1gxjA)N549 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1gxjA 547 :VR T0547 160 :LNELEA 1gxjA 550 :VDTAKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33052 # 2absA.157.113 read from T0547.t2k.many.frag # found chain 2absA in training set T0547 157 :IEGLNELEA 2absA 94 :IGDDPRGQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33053 # 1zcjA.157.66 read from T0547.t2k.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)G159 (1zcjA)D328 because P (beta_P) conformation "forbidden" or filtered. T0547 157 :IE 1zcjA 326 :ES T0547 160 :LNELEA 1zcjA 329 :PKQLDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33055 # 2b9eA.157.131 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 157 :IEGLNELEA 2b9eA 258 :DLDAKRLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33056 # 1em8A.157.42 read from T0547.t2k.many.frag # found chain 1em8A in template set T0547 157 :IEGLNELEA 1em8A 43 :CEDEKQAYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33057 # 2bh1X.157.65 read from T0547.t2k.many.frag # found chain 2bh1X in template set T0547 157 :IEGLNELEA 2bh1X 66 :ELSQAEFES Number of specific fragments extracted= 1 number of extra gaps= 0 total=33058 # 2bz1A.157.148 read from T0547.t2k.many.frag # found chain 2bz1A in training set Warning: unaligning (T0547)I157 (2bz1A)T149 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (2bz1A)N151 because D (zeta) conformation "forbidden" or filtered. T0547 158 :E 2bz1A 150 :N T0547 160 :LNELEA 2bz1A 152 :PKKVEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=33060 # 1pii.157.163 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 157 :IEGLNELEA 1pii 164 :VSNEEEQER Number of specific fragments extracted= 1 number of extra gaps= 0 total=33061 # 1k7jA.157.68 read from T0547.t2k.many.frag # found chain 1k7jA in training set T0547 157 :IEGLNELEA 1k7jA 69 :CRDLSELST Number of specific fragments extracted= 1 number of extra gaps= 0 total=33062 # 1vhuA.157.183 read from T0547.t2k.many.frag # found chain 1vhuA in training set Warning: unaligning (T0547)G159 (1vhuA)D184 because P (beta_P) conformation "forbidden" or filtered. T0547 157 :IE 1vhuA 182 :IY T0547 160 :LNELEA 1vhuA 185 :RKSAEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33064 # 1k3yA.157.33 read from T0547.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0547)G159 (1k3yA)S37 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1k3yA 35 :IK T0547 160 :LNELEA 1k3yA 38 :AEDLDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=33066 # 1a8y.157.129 read from T0547.t2k.many.frag # found chain 1a8y in template set T0547 157 :IEGLNELEA 1a8y 130 :IEGERELQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33067 # 1dg9A.157.89 read from T0547.t2k.many.frag # found chain 1dg9A in template set T0547 157 :IEGLNELEA 1dg9A 90 :CMDESNLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33068 # 1ne2A.157.80 read from T0547.t2k.many.frag # found chain 1ne2A in training set T0547 157 :IEGLNELEA 1ne2A 78 :DIDPDAIET Number of specific fragments extracted= 1 number of extra gaps= 0 total=33069 # 1in0A.157.51 read from T0547.t2k.many.frag # found chain 1in0A in template set T0547 157 :IEGLNELEA 1in0A 52 :TESDFQLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33070 # 1vkfA.157.88 read from T0547.t2k.many.frag # found chain 1vkfA in training set Warning: unaligning (T0547)I157 (1vkfA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1vkfA)K79 because N (gamma') conformation "forbidden" or filtered. T0547 158 :E 1vkfA 78 :I T0547 160 :LNELEA 1vkfA 80 :PKNYVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=33072 2ewcA expands to /projects/compbio/data/pdb/2ewc.pdb.gz 2ewcA:Skipped atom 237, because occupancy 0.500 <= existing 0.500 in 2ewcA Skipped atom 239, because occupancy 0.500 <= existing 0.500 in 2ewcA Skipped atom 241, because occupancy 0.500 <= existing 0.500 in 2ewcA Skipped atom 243, because occupancy 0.500 <= existing 0.500 in 2ewcA Skipped atom 245, because occupancy 0.500 <= existing 0.500 in 2ewcA Skipped atom 247, because occupancy 0.500 <= existing 0.500 in 2ewcA Skipped atom 249, because occupancy 0.500 <= existing 0.500 in 2ewcA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 821, because occupancy 0.500 <= existing 0.500 in 2ewcA Skipped atom 823, because occupancy 0.500 <= existing 0.500 in 2ewcA Skipped atom 825, because occupancy 0.500 <= existing 0.500 in 2ewcA Skipped atom 827, because occupancy 0.500 <= existing 0.500 in 2ewcA Skipped atom 829, because occupancy 0.500 <= existing 0.500 in 2ewcA Skipped atom 831, because occupancy 0.500 <= existing 0.500 in 2ewcA Skipped atom 833, because occupancy 0.500 <= existing 0.500 in 2ewcA Skipped atom 835, because occupancy 0.500 <= existing 0.500 in 2ewcA Skipped atom 837, because occupancy 0.500 <= existing 0.500 in 2ewcA Skipped atom 839, because occupancy 0.500 <= existing 0.500 in 2ewcA # 2ewcA.157.69 read from T0547.t2k.many.frag # adding 2ewcA to template set # found chain 2ewcA in template set Warning: unaligning (T0547)G159 (2ewcA)D72 because D (zeta) conformation "forbidden" or filtered. T0547 157 :IE 2ewcA 70 :FR T0547 160 :LNELEA 2ewcA 73 :VWNIPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33074 # 1wouA.157.8 read from T0547.t2k.many.frag # found chain 1wouA in training set Warning: unaligning (T0547)G159 (1wouA)G11 because S (epsilon) conformation "forbidden" or filtered. T0547 157 :IE 1wouA 9 :VS T0547 160 :LNELEA 1wouA 12 :FEEFHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=33076 # 1izcA.157.125 read from T0547.t2k.many.frag # found chain 1izcA in training set Warning: unaligning (T0547)G159 (1izcA)T128 because E (beta_S) conformation "forbidden" or filtered. T0547 157 :IE 1izcA 126 :VE T0547 160 :LNELEA 1izcA 129 :VEEVRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33078 # 1iuqA.157.112 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)E158 (1iuqA)G115 because P (beta_P) conformation "forbidden" or filtered. T0547 157 :I 1iuqA 114 :V T0547 159 :GLNELEA 1iuqA 116 :NLSLFKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=33080 # 1ct5A.158.113 read from T0547.t2k.many.frag # found chain 1ct5A in template set T0547 158 :EGLNELEAI 1ct5A 115 :DSLKKAKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33081 # 1knwA.158.121 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 158 :EGLNELEAI 1knwA 122 :GSVDMLDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33082 # 1y5mA.158.49 read from T0547.t2k.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)G159 (1y5mA)S67 because P (beta_P) conformation "forbidden" or filtered. T0547 158 :E 1y5mA 66 :R T0547 160 :LNELEAI 1y5mA 68 :EEGLQKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33084 # 2b7nA.158.189 read from T0547.t2k.many.frag # found chain 2b7nA in template set T0547 158 :EGLNELEAI 2b7nA 190 :ESFEEAKNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33085 # 2b9eA.158.132 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 158 :EGLNELEAI 2b9eA 259 :LDAKRLASM Number of specific fragments extracted= 1 number of extra gaps= 0 total=33086 # 7odcA.158.133 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 158 :EGLNELEAI 7odcA 134 :DSEIELMKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33087 # 1em8A.158.43 read from T0547.t2k.many.frag # found chain 1em8A in template set Warning: unaligning (T0547)G159 (1em8A)D45 because E (beta_S) conformation "forbidden" or filtered. T0547 158 :E 1em8A 44 :E T0547 160 :LNELEAI 1em8A 46 :EKQAYRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33089 # 1y1pA.158.42 read from T0547.t2k.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G159 (1y1pA)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 158 :E 1y1pA 44 :R T0547 160 :LNELEAI 1y1pA 46 :ASKLANL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33091 # 1wn2A.158.62 read from T0547.t2k.many.frag # found chain 1wn2A in training set Warning: unaligning (T0547)G159 (1wn2A)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 158 :E 1wn2A 63 :E T0547 160 :LNELEAI 1wn2A 65 :EEELFKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33093 # 1izcA.158.126 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 158 :EGLNELEAI 1izcA 127 :ETVEEVREF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33094 # 1wiwA.158.221 read from T0547.t2k.many.frag # found chain 1wiwA in template set Warning: unaligning (T0547)G159 (1wiwA)P223 because P (beta_P) conformation "forbidden" or filtered. T0547 158 :E 1wiwA 222 :G T0547 160 :LNELEAI 1wiwA 224 :GEEAALA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33096 # 2b4aA.158.22 read from T0547.t2k.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)G159 (2b4aA)E12 because P (beta_P) conformation "forbidden" or filtered. T0547 158 :E 2b4aA 11 :D T0547 160 :LNELEAI 2b4aA 13 :PSHATLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33098 # 1gxjA.158.63 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 158 :EGLNELEAI 1gxjA 548 :RNVDTAKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33099 # 1iuqA.158.113 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 158 :EGLNELEAI 1iuqA 115 :GNLSLFKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33100 # 2absA.158.114 read from T0547.t2k.many.frag # found chain 2absA in training set Warning: unaligning (T0547)E158 (2absA)G95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (2absA)D96 because G (3-10) conformation "forbidden" or filtered. T0547 160 :LNELEAI 2absA 97 :DPRGQVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33101 # 1vhuA.158.184 read from T0547.t2k.many.frag # found chain 1vhuA in training set Warning: unaligning (T0547)G159 (1vhuA)D184 because P (beta_P) conformation "forbidden" or filtered. T0547 158 :E 1vhuA 183 :Y T0547 160 :LNELEAI 1vhuA 185 :RKSAEVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33103 1q0uA expands to /projects/compbio/data/pdb/1q0u.pdb.gz 1q0uA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1q0uA.158.79 read from T0547.t2k.many.frag # adding 1q0uA to template set # found chain 1q0uA in template set T0547 158 :EGLNELEAI 1q0uA 80 :PTRELATQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33104 # 1jqnA.158.505 read from T0547.t2k.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)G159 (1jqnA)T507 because E (beta_S) conformation "forbidden" or filtered. T0547 158 :E 1jqnA 506 :E T0547 160 :LNELEAI 1jqnA 508 :LDDLNNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33106 1nt2A expands to /projects/compbio/data/pdb/1nt2.pdb.gz 1nt2A:# 1nt2A.158.88 read from T0547.t2k.many.frag # adding 1nt2A to template set # found chain 1nt2A in template set T0547 158 :EGLNELEAI 1nt2A 89 :YSAKPFEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33107 # 2carA.158.16 read from T0547.t2k.many.frag # found chain 2carA in training set T0547 158 :EGLNELEAI 2carA 15 :GNAKKLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33108 # 1dg9A.158.90 read from T0547.t2k.many.frag # found chain 1dg9A in template set T0547 158 :EGLNELEAI 1dg9A 91 :MDESNLRDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33109 # 1k3yA.158.34 read from T0547.t2k.many.frag # found chain 1k3yA in training set T0547 158 :EGLNELEAI 1k3yA 36 :KSAEDLDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33110 1srvA expands to /projects/compbio/data/pdb/1srv.pdb.gz 1srvA:Skipped atom 42, because occupancy 0.300 <= existing 0.700 in 1srvA Skipped atom 44, because occupancy 0.300 <= existing 0.700 in 1srvA Skipped atom 46, because occupancy 0.300 <= existing 0.700 in 1srvA Skipped atom 48, because occupancy 0.300 <= existing 0.700 in 1srvA Skipped atom 197, because occupancy 0.500 <= existing 0.500 in 1srvA Skipped atom 199, because occupancy 0.500 <= existing 0.500 in 1srvA Skipped atom 201, because occupancy 0.500 <= existing 0.500 in 1srvA Skipped atom 203, because occupancy 0.500 <= existing 0.500 in 1srvA Skipped atom 266, because occupancy 0.300 <= existing 0.700 in 1srvA Skipped atom 268, because occupancy 0.300 <= existing 0.700 in 1srvA Skipped atom 270, because occupancy 0.300 <= existing 0.700 in 1srvA Skipped atom 276, because occupancy 0.300 <= existing 0.700 in 1srvA Skipped atom 278, because occupancy 0.300 <= existing 0.700 in 1srvA Skipped atom 280, because occupancy 0.300 <= existing 0.700 in 1srvA Skipped atom 282, because occupancy 0.300 <= existing 0.700 in 1srvA Skipped atom 284, because occupancy 0.300 <= existing 0.700 in 1srvA Skipped atom 356, because occupancy 0.400 <= existing 0.600 in 1srvA Skipped atom 358, because occupancy 0.400 <= existing 0.600 in 1srvA Skipped atom 360, because occupancy 0.400 <= existing 0.600 in 1srvA Skipped atom 362, because occupancy 0.400 <= existing 0.600 in 1srvA Skipped atom 673, because occupancy 0.300 <= existing 0.700 in 1srvA Skipped atom 675, because occupancy 0.300 <= existing 0.700 in 1srvA Skipped atom 677, because occupancy 0.300 <= existing 0.700 in 1srvA Skipped atom 902, because occupancy 0.350 <= existing 0.650 in 1srvA Skipped atom 904, because occupancy 0.350 <= existing 0.650 in 1srvA Skipped atom 906, because occupancy 0.350 <= existing 0.650 in 1srvA Skipped atom 908, because occupancy 0.350 <= existing 0.650 in 1srvA Skipped atom 910, because occupancy 0.350 <= existing 0.650 in 1srvA Skipped atom 912, because occupancy 0.350 <= existing 0.650 in 1srvA Skipped atom 914, because occupancy 0.350 <= existing 0.650 in 1srvA Skipped atom 1000, because occupancy 0.400 <= existing 0.600 in 1srvA Skipped atom 1002, because occupancy 0.400 <= existing 0.600 in 1srvA Skipped atom 1004, because occupancy 0.400 <= existing 0.600 in 1srvA Skipped atom 1006, because occupancy 0.400 <= existing 0.600 in 1srvA Skipped atom 1008, because occupancy 0.400 <= existing 0.600 in 1srvA Skipped atom 1010, because occupancy 0.400 <= existing 0.600 in 1srvA Skipped atom 1012, because occupancy 0.400 <= existing 0.600 in 1srvA # 1srvA.158.36 read from T0547.t2k.many.frag # adding 1srvA to template set # found chain 1srvA in template set Warning: unaligning (T0547)G159 (1srvA)N229 because P (beta_P) conformation "forbidden" or filtered. T0547 158 :E 1srvA 228 :S T0547 160 :LNELEAI 1srvA 230 :VRELLPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33112 # 1zcjA.158.67 read from T0547.t2k.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)G159 (1zcjA)D328 because P (beta_P) conformation "forbidden" or filtered. T0547 158 :E 1zcjA 327 :S T0547 160 :LNELEAI 1zcjA 329 :PKQLDAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33114 # 2bg5A.158.144 read from T0547.t2k.many.frag # found chain 2bg5A in template set T0547 158 :EGLNELEAI 2bg5A 394 :SSVEEVRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33115 # 1nytA.158.149 read from T0547.t2k.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)G159 (1nytA)T151 because N (gamma') conformation "forbidden" or filtered. T0547 158 :E 1nytA 150 :R T0547 160 :LNELEAI 1nytA 152 :VSRAEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33117 # 2ewcA.158.70 read from T0547.t2k.many.frag # found chain 2ewcA in template set Warning: unaligning (T0547)G159 (2ewcA)D72 because D (zeta) conformation "forbidden" or filtered. T0547 158 :E 2ewcA 71 :R T0547 160 :LNELEAI 2ewcA 73 :VWNIPVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=33119 # 1in0A.158.52 read from T0547.t2k.many.frag # found chain 1in0A in template set T0547 158 :EGLNELEAI 1in0A 53 :ESDFQLEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33120 # 1wouA.158.9 read from T0547.t2k.many.frag # found chain 1wouA in training set T0547 158 :EGLNELEAI 1wouA 10 :SGFEEFHRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33121 # 1p4cA.158.211 read from T0547.t2k.many.frag # found chain 1p4cA in training set Warning: unaligning (T0547)E158 (1p4cA)F212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1p4cA)N213 because Y (epsilon') conformation "forbidden" or filtered. T0547 160 :LNELEAI 1p4cA 214 :WEALRWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33122 # 1y5mA.159.50 read from T0547.t2k.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)G159 (1y5mA)S67 because P (beta_P) conformation "forbidden" or filtered. T0547 160 :LNELEAII 1y5mA 68 :EEGLQKVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=33123 # 7odcA.159.134 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 159 :GLNELEAII 7odcA 135 :SEIELMKVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33124 # 1em8A.159.44 read from T0547.t2k.many.frag # found chain 1em8A in template set T0547 159 :GLNELEAII 1em8A 45 :DEKQAYRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33125 # 1y1pA.159.43 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 159 :GLNELEAII 1y1pA 45 :SASKLANLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33126 # 1izcA.159.127 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 159 :GLNELEAII 1izcA 128 :TVEEVREFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33127 # 1wn2A.159.63 read from T0547.t2k.many.frag # found chain 1wn2A in training set Warning: unaligning (T0547)G159 (1wn2A)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 160 :LNELEAII 1wn2A 65 :EEELFKLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=33128 # 1wiwA.159.222 read from T0547.t2k.many.frag # found chain 1wiwA in template set T0547 159 :GLNELEAII 1wiwA 223 :PGEEAALAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33129 # 2b9eA.159.133 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)G159 (2b9eA)D260 because N (gamma') conformation "forbidden" or filtered. T0547 160 :LNELEAII 2b9eA 261 :AKRLASMA Number of specific fragments extracted= 1 number of extra gaps= 1 total=33130 # 1knwA.159.122 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 159 :GLNELEAII 1knwA 123 :SVDMLDQLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33131 # 2b4aA.159.23 read from T0547.t2k.many.frag # found chain 2b4aA in template set T0547 159 :GLNELEAII 2b4aA 12 :EPSHATLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33132 # 2bbrA.159.107 read from T0547.t2k.many.frag # found chain 2bbrA in training set T0547 159 :GLNELEAII 2bbrA 108 :DSSELRALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33133 # 1gxjA.159.64 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 159 :GLNELEAII 1gxjA 549 :NVDTAKAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33134 # 1jakA.159.171 read from T0547.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0547)G159 (1jakA)G166 because P (beta_P) conformation "forbidden" or filtered. T0547 160 :LNELEAII 1jakA 167 :VDEVKRYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=33135 # 1srvA.159.37 read from T0547.t2k.many.frag # found chain 1srvA in template set Warning: unaligning (T0547)G159 (1srvA)N229 because P (beta_P) conformation "forbidden" or filtered. T0547 160 :LNELEAII 1srvA 230 :VRELLPIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33136 # 1ct5A.159.114 read from T0547.t2k.many.frag # found chain 1ct5A in template set T0547 159 :GLNELEAII 1ct5A 116 :SLKKAKKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33137 # 1iuqA.159.114 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 159 :GLNELEAII 1iuqA 116 :NLSLFKDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33138 # 1h6dA.159.185 read from T0547.t2k.many.frag # found chain 1h6dA in template set T0547 159 :GLNELEAII 1h6dA 186 :SVADCQRMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33139 # 1vhuA.159.185 read from T0547.t2k.many.frag # found chain 1vhuA in training set T0547 159 :GLNELEAII 1vhuA 184 :DRKSAEVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33140 # 1ijbA.159.26 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 159 :GLNELEAII 1ijbA 526 :SEAEFEVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33141 # 2bg5A.159.145 read from T0547.t2k.many.frag # found chain 2bg5A in template set T0547 159 :GLNELEAII 2bg5A 395 :SVEEVRKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33142 # 2b7nA.159.190 read from T0547.t2k.many.frag # found chain 2b7nA in template set T0547 159 :GLNELEAII 2b7nA 191 :SFEEAKNAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=33143 # 1nt2A.159.89 read from T0547.t2k.many.frag # found chain 1nt2A in template set T0547 159 :GLNELEAII 1nt2A 90 :SAKPFEKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33144 # 1p4cA.159.212 read from T0547.t2k.many.frag # found chain 1p4cA in training set Warning: unaligning (T0547)G159 (1p4cA)N213 because Y (epsilon') conformation "forbidden" or filtered. T0547 160 :LNELEAII 1p4cA 214 :WEALRWLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=33145 # 1dg9A.159.91 read from T0547.t2k.many.frag # found chain 1dg9A in template set T0547 159 :GLNELEAII 1dg9A 92 :DESNLRDLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33146 # 1jubA.159.169 read from T0547.t2k.many.frag # found chain 1jubA in training set T0547 159 :GLNELEAII 1jubA 170 :DLVHFDIMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33147 # 2absA.159.115 read from T0547.t2k.many.frag # found chain 2absA in training set Warning: unaligning (T0547)G159 (2absA)D96 because G (3-10) conformation "forbidden" or filtered. T0547 160 :LNELEAII 2absA 97 :DPRGQVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=33148 # 1q0uA.159.80 read from T0547.t2k.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)G159 (1q0uA)T81 because E (beta_S) conformation "forbidden" or filtered. T0547 160 :LNELEAII 1q0uA 82 :RELATQIY Number of specific fragments extracted= 1 number of extra gaps= 1 total=33149 # 1jqnA.159.506 read from T0547.t2k.many.frag # found chain 1jqnA in template set T0547 159 :GLNELEAII 1jqnA 507 :TLDDLNNAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33150 # 1w6gA.159.13 read from T0547.t2k.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)G159 (1w6gA)S16 because P (beta_P) conformation "forbidden" or filtered. T0547 160 :LNELEAII 1w6gA 17 :AGEISEVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=33151 # 1yiiA.159.116 read from T0547.t2k.many.frag # found chain 1yiiA in training set T0547 159 :GLNELEAII 1yiiA 118 :TPAEVQNIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33152 # 1ct5A.160.115 read from T0547.t2k.many.frag # found chain 1ct5A in template set T0547 160 :LNELEAIID 1ct5A 117 :LKKAKKLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33153 # 1knwA.160.123 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 160 :LNELEAIID 1knwA 124 :VDMLDQLGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33154 # 1nytA.160.151 read from T0547.t2k.many.frag # found chain 1nytA in training set T0547 160 :LNELEAIID 1nytA 152 :VSRAEELAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33155 # 7odcA.160.135 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 160 :LNELEAIID 7odcA 136 :EIELMKVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33156 # 1em8A.160.45 read from T0547.t2k.many.frag # found chain 1em8A in template set T0547 160 :LNELEAIID 1em8A 46 :EKQAYRLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33157 # 1iuqA.160.115 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 160 :LNELEAIID 1iuqA 117 :LSLFKDIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33158 # 1y1pA.160.44 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 160 :LNELEAIID 1y1pA 46 :ASKLANLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33159 # 1wn2A.160.64 read from T0547.t2k.many.frag # found chain 1wn2A in training set T0547 160 :LNELEAIID 1wn2A 65 :EEELFKLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33160 # 1nt2A.160.90 read from T0547.t2k.many.frag # found chain 1nt2A in template set T0547 160 :LNELEAIID 1nt2A 91 :AKPFEKLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33161 # 1w6gA.160.14 read from T0547.t2k.many.frag # found chain 1w6gA in training set T0547 160 :LNELEAIID 1w6gA 17 :AGEISEVQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33162 # 1wiwA.160.223 read from T0547.t2k.many.frag # found chain 1wiwA in template set Warning: unaligning (T0547)L160 (1wiwA)G224 because S (epsilon) conformation "forbidden" or filtered. T0547 161 :NELEAIID 1wiwA 225 :EEAALAKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=33163 # 1izcA.160.128 read from T0547.t2k.many.frag # found chain 1izcA in training set T0547 160 :LNELEAIID 1izcA 129 :VEEVREFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33164 1uf3A expands to /projects/compbio/data/pdb/1uf3.pdb.gz 1uf3A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1uf3A.160.17 read from T0547.t2k.many.frag # adding 1uf3A to template set # found chain 1uf3A in template set T0547 160 :LNELEAIID 1uf3A 18 :LEALEKFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33165 # 2b4aA.160.24 read from T0547.t2k.many.frag # found chain 2b4aA in template set T0547 160 :LNELEAIID 2b4aA 13 :PSHATLIQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33166 # 1h6dA.160.186 read from T0547.t2k.many.frag # found chain 1h6dA in template set T0547 160 :LNELEAIID 1h6dA 187 :VADCQRMID Number of specific fragments extracted= 1 number of extra gaps= 0 total=33167 # 2bbrA.160.108 read from T0547.t2k.many.frag # found chain 2bbrA in training set T0547 160 :LNELEAIID 2bbrA 109 :SSELRALRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33168 # 2b9eA.160.134 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 160 :LNELEAIID 2b9eA 261 :AKRLASMAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33169 # 1yiiA.160.117 read from T0547.t2k.many.frag # found chain 1yiiA in training set T0547 160 :LNELEAIID 1yiiA 119 :PAEVQNIKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33170 # 1vhuA.160.186 read from T0547.t2k.many.frag # found chain 1vhuA in training set T0547 160 :LNELEAIID 1vhuA 185 :RKSAEVALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33171 # 1g61A.160.77 read from T0547.t2k.many.frag # found chain 1g61A in training set T0547 160 :LNELEAIID 1g61A 2078 :DEELDRIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33172 # 1jakA.160.172 read from T0547.t2k.many.frag # found chain 1jakA in training set T0547 160 :LNELEAIID 1jakA 167 :VDEVKRYID Number of specific fragments extracted= 1 number of extra gaps= 0 total=33173 # 1srvA.160.38 read from T0547.t2k.many.frag # found chain 1srvA in template set T0547 160 :LNELEAIID 1srvA 230 :VRELLPILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33174 # 1jubA.160.170 read from T0547.t2k.many.frag # found chain 1jubA in training set T0547 160 :LNELEAIID 1jubA 171 :LVHFDIMAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33175 # 1ijbA.160.27 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 160 :LNELEAIID 1ijbA 527 :EAEFEVLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33176 # 1f74A.160.22 read from T0547.t2k.many.frag # found chain 1f74A in training set T0547 160 :LNELEAIID 1f74A 23 :EKGLRQIIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33177 # 1gxjA.160.65 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 160 :LNELEAIID 1gxjA 550 :VDTAKAIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33178 # 2bg5A.160.146 read from T0547.t2k.many.frag # found chain 2bg5A in template set T0547 160 :LNELEAIID 2bg5A 396 :VEEVRKANS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33179 # 1y5mA.160.51 read from T0547.t2k.many.frag # found chain 1y5mA in template set T0547 160 :LNELEAIID 1y5mA 68 :EEGLQKVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33180 1vliA expands to /projects/compbio/data/pdb/1vli.pdb.gz 1vliA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vliA.160.169 read from T0547.t2k.many.frag # adding 1vliA to template set # found chain 1vliA in template set T0547 160 :LNELEAIID 1vliA 158 :ISDVHEAWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33181 # 1jqnA.160.507 read from T0547.t2k.many.frag # found chain 1jqnA in template set T0547 160 :LNELEAIID 1jqnA 508 :LDDLNNAND Number of specific fragments extracted= 1 number of extra gaps= 0 total=33182 # 1ct5A.161.116 read from T0547.t2k.many.frag # found chain 1ct5A in template set T0547 161 :NELEAIIDI 1ct5A 118 :KKAKKLNES Number of specific fragments extracted= 1 number of extra gaps= 0 total=33183 # 1knwA.161.124 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 161 :NELEAIIDI 1knwA 125 :DMLDQLGQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33184 # 2bbrA.161.109 read from T0547.t2k.many.frag # found chain 2bbrA in training set T0547 161 :NELEAIIDI 2bbrA 110 :SELRALRLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33185 # 1iuqA.161.116 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 161 :NELEAIIDI 1iuqA 118 :SLFKDIEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33186 # 1y1pA.161.45 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 161 :NELEAIIDI 1y1pA 47 :SKLANLQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33187 # 1wn2A.161.65 read from T0547.t2k.many.frag # found chain 1wn2A in training set T0547 161 :NELEAIIDI 1wn2A 66 :EELFKLKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33188 # 1g61A.161.78 read from T0547.t2k.many.frag # found chain 1g61A in training set T0547 161 :NELEAIIDI 1g61A 2079 :EELDRIKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33189 # 1f3vA.161.149 read from T0547.t2k.many.frag # found chain 1f3vA in template set T0547 161 :NELEAIIDI 1f3vA 150 :EELAELEDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33190 # 1em8A.161.46 read from T0547.t2k.many.frag # found chain 1em8A in template set T0547 161 :NELEAIIDI 1em8A 47 :KQAYRLDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33191 # 1w6gA.161.15 read from T0547.t2k.many.frag # found chain 1w6gA in training set T0547 161 :NELEAIIDI 1w6gA 18 :GEISEVQGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33192 # 1h6dA.161.187 read from T0547.t2k.many.frag # found chain 1h6dA in template set T0547 161 :NELEAIIDI 1h6dA 188 :ADCQRMIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33193 # 2b4aA.161.25 read from T0547.t2k.many.frag # found chain 2b4aA in template set T0547 161 :NELEAIIDI 2b4aA 14 :SHATLIQYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33194 # 1rttA.161.60 read from T0547.t2k.many.frag # found chain 1rttA in training set T0547 161 :NELEAIIDI 1rttA 61 :PAVERFREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33195 # 2f46A.161.88 read from T0547.t2k.many.frag # found chain 2f46A in training set T0547 161 :NELEAIIDI 2f46A 88 :HDVETFRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33196 # 1nytA.161.152 read from T0547.t2k.many.frag # found chain 1nytA in training set T0547 161 :NELEAIIDI 1nytA 153 :SRAEELAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33197 # 1wl8A.161.10 read from T0547.t2k.many.frag # found chain 1wl8A in training set T0547 161 :NELEAIIDI 1wl8A 11 :QYVHRIWRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33198 # 1uf3A.161.18 read from T0547.t2k.many.frag # found chain 1uf3A in template set T0547 161 :NELEAIIDI 1uf3A 19 :EALEKFVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33199 # 1rw1A.161.10 read from T0547.t2k.many.frag # found chain 1rw1A in training set T0547 161 :NELEAIIDI 1rw1A 12 :DTMKKARTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=33200 # 1zzmA.161.75 read from T0547.t2k.many.frag # found chain 1zzmA in training set T0547 161 :NELEAIIDI 1zzmA 76 :VSLEQLQQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33201 # 1nt2A.161.91 read from T0547.t2k.many.frag # found chain 1nt2A in template set T0547 161 :NELEAIIDI 1nt2A 92 :KPFEKLLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33202 # 7odcA.161.136 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I169 (7odcA)A145 because G (3-10) conformation "forbidden" or filtered. T0547 161 :NELEAIID 7odcA 137 :IELMKVAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=33203 # 1yiiA.161.118 read from T0547.t2k.many.frag # found chain 1yiiA in training set T0547 161 :NELEAIIDI 1yiiA 120 :AEVQNIKQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33204 2c5kT expands to /projects/compbio/data/pdb/2c5k.pdb.gz 2c5kT:Skipped atom 302, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 303, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 304, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 305, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 306, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 307, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 657, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 659, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 660, because occupancy 0.500 <= existing 0.500 in 2c5kT # 2c5kT.161.16 read from T0547.t2k.many.frag # adding 2c5kT to template set # found chain 2c5kT in template set T0547 161 :NELEAIIDI 2c5kT 17 :EQLNRINNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33205 # 2absA.161.117 read from T0547.t2k.many.frag # found chain 2absA in training set T0547 161 :NELEAIIDI 2absA 98 :PRGQVLKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33206 2f02A expands to /projects/compbio/data/pdb/2f02.pdb.gz 2f02A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2f02A.161.63 read from T0547.t2k.many.frag # adding 2f02A to template set # found chain 2f02A in template set T0547 161 :NELEAIIDI 2f02A 62 :FHGAFIANE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33207 # 1gxjA.161.66 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 161 :NELEAIIDI 1gxjA 551 :DTAKAIVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33208 1ttzA expands to /projects/compbio/data/pdb/1ttz.pdb.gz 1ttzA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ttzA.161.11 read from T0547.t2k.many.frag # adding 1ttzA to template set # found chain 1ttzA in template set T0547 161 :NELEAIIDI 1ttzA 12 :HLCDQAVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33209 1wqgA expands to /projects/compbio/data/pdb/1wqg.pdb.gz 1wqgA:# 1wqgA.161.72 read from T0547.t2k.many.frag # adding 1wqgA to template set # found chain 1wqgA in template set T0547 161 :NELEAIIDI 1wqgA 73 :NQLRAIETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33210 # 1qo7A.161.23 read from T0547.t2k.many.frag # found chain 1qo7A in training set T0547 161 :NELEAIIDI 1qo7A 26 :EQLDDLKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33211 # 1jubA.161.171 read from T0547.t2k.many.frag # found chain 1jubA in training set T0547 161 :NELEAIIDI 1jubA 172 :VHFDIMAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33212 # 1wn2A.162.66 read from T0547.t2k.many.frag # found chain 1wn2A in training set T0547 162 :ELEAIIDIA 1wn2A 67 :ELFKLKAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33213 # 1h6dA.162.188 read from T0547.t2k.many.frag # found chain 1h6dA in template set T0547 162 :ELEAIIDIA 1h6dA 189 :DCQRMIDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33214 # 1em8A.162.47 read from T0547.t2k.many.frag # found chain 1em8A in template set T0547 162 :ELEAIIDIA 1em8A 48 :QAYRLDEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33215 # 1iuqA.162.117 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 162 :ELEAIIDIA 1iuqA 119 :LFKDIEEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33216 # 2b4aA.162.26 read from T0547.t2k.many.frag # found chain 2b4aA in template set T0547 162 :ELEAIIDIA 2b4aA 15 :HATLIQYHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33217 # 1y1pA.162.46 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 162 :ELEAIIDIA 1y1pA 48 :KLANLQKRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=33218 # 1g61A.162.79 read from T0547.t2k.many.frag # found chain 1g61A in training set T0547 162 :ELEAIIDIA 1g61A 2080 :ELDRIKNFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33219 # 1zzmA.162.76 read from T0547.t2k.many.frag # found chain 1zzmA in training set T0547 162 :ELEAIIDIA 1zzmA 77 :SLEQLQQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33220 # 1ct5A.162.117 read from T0547.t2k.many.frag # found chain 1ct5A in template set T0547 162 :ELEAIIDIA 1ct5A 119 :KAKKLNESR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33221 # 1f3vA.162.150 read from T0547.t2k.many.frag # found chain 1f3vA in template set T0547 162 :ELEAIIDIA 1f3vA 151 :ELAELEDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33222 # 2f46A.162.89 read from T0547.t2k.many.frag # found chain 2f46A in training set T0547 162 :ELEAIIDIA 2f46A 89 :DVETFRQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33223 # 1knwA.162.125 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I169 (1knwA)V133 because G (3-10) conformation "forbidden" or filtered. T0547 162 :ELEAIID 1knwA 126 :MLDQLGQ T0547 170 :A 1knwA 134 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=33225 # 1uf3A.162.19 read from T0547.t2k.many.frag # found chain 1uf3A in template set T0547 162 :ELEAIIDIA 1uf3A 20 :ALEKFVKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33226 # 1nytA.162.153 read from T0547.t2k.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)A170 (1nytA)F162 because G (3-10) conformation "forbidden" or filtered. T0547 162 :ELEAIIDI 1nytA 154 :RAEELAKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33227 # 2f02A.162.64 read from T0547.t2k.many.frag # found chain 2f02A in template set T0547 162 :ELEAIIDIA 2f02A 63 :HGAFIANEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33228 # 1rttA.162.61 read from T0547.t2k.many.frag # found chain 1rttA in training set T0547 162 :ELEAIIDIA 1rttA 62 :AVERFREQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33229 # 2absA.162.118 read from T0547.t2k.many.frag # found chain 2absA in training set T0547 162 :ELEAIIDIA 2absA 99 :RGQVLKELC Number of specific fragments extracted= 1 number of extra gaps= 0 total=33230 # 1wl8A.162.11 read from T0547.t2k.many.frag # found chain 1wl8A in training set T0547 162 :ELEAIIDIA 1wl8A 12 :YVHRIWRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33231 # 2c5kT.162.17 read from T0547.t2k.many.frag # found chain 2c5kT in template set T0547 162 :ELEAIIDIA 2c5kT 18 :QLNRINNYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33232 # 1jubA.162.172 read from T0547.t2k.many.frag # found chain 1jubA in training set T0547 162 :ELEAIIDIA 1jubA 173 :HFDIMAEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33233 # 1f74A.162.24 read from T0547.t2k.many.frag # found chain 1f74A in training set T0547 162 :ELEAIIDIA 1f74A 25 :GLRQIIRHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33234 # 2bbrA.162.110 read from T0547.t2k.many.frag # found chain 2bbrA in training set T0547 162 :ELEAIIDIA 2bbrA 111 :ELRALRLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33235 # 7odcA.162.137 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I169 (7odcA)A145 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A170 (7odcA)H146 because D (zeta) conformation "forbidden" or filtered. T0547 162 :ELEAIID 7odcA 138 :ELMKVAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=33236 # 1nt2A.162.92 read from T0547.t2k.many.frag # found chain 1nt2A in template set T0547 162 :ELEAIIDIA 1nt2A 93 :PFEKLLELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33237 # 1srvA.162.40 read from T0547.t2k.many.frag # found chain 1srvA in template set T0547 162 :ELEAIIDIA 1srvA 232 :ELLPILEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33238 # 1y5mA.162.53 read from T0547.t2k.many.frag # found chain 1y5mA in template set T0547 162 :ELEAIIDIA 1y5mA 70 :GLQKVVSRC Number of specific fragments extracted= 1 number of extra gaps= 0 total=33239 # 8abp.162.69 read from T0547.t2k.many.frag # found chain 8abp in training set T0547 162 :ELEAIIDIA 8abp 70 :LGSAIVAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33240 # 1r9jA.162.225 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 162 :ELEAIIDIA 1r9jA 224 :GLRKALAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33241 # 1gxjA.162.67 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 162 :ELEAIIDIA 1gxjA 552 :TAKAIVEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33242 # 1yiiA.162.119 read from T0547.t2k.many.frag # found chain 1yiiA in training set T0547 162 :ELEAIIDIA 1yiiA 121 :EVQNIKQVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33243 # 1wn2A.163.67 read from T0547.t2k.many.frag # found chain 1wn2A in training set T0547 163 :LEAIIDIAK 1wn2A 68 :LFKLKAEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33244 # 1g61A.163.80 read from T0547.t2k.many.frag # found chain 1g61A in training set T0547 163 :LEAIIDIAK 1g61A 2081 :LDRIKNFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33245 # 1h6dA.163.189 read from T0547.t2k.many.frag # found chain 1h6dA in template set T0547 163 :LEAIIDIAK 1h6dA 190 :CQRMIDAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33246 # 1uf3A.163.20 read from T0547.t2k.many.frag # found chain 1uf3A in template set T0547 163 :LEAIIDIAK 1uf3A 21 :LEKFVKLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33247 # 2b4aA.163.27 read from T0547.t2k.many.frag # found chain 2b4aA in template set T0547 163 :LEAIIDIAK 2b4aA 16 :ATLIQYHLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33248 # 1em8A.163.48 read from T0547.t2k.many.frag # found chain 1em8A in template set T0547 163 :LEAIIDIAK 1em8A 49 :AYRLDEALW Number of specific fragments extracted= 1 number of extra gaps= 0 total=33249 # 1zzmA.163.77 read from T0547.t2k.many.frag # found chain 1zzmA in training set T0547 163 :LEAIIDIAK 1zzmA 78 :LEQLQQALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33250 # 2f46A.163.90 read from T0547.t2k.many.frag # found chain 2f46A in training set T0547 163 :LEAIIDIAK 2f46A 90 :VETFRQLIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33251 # 1y1pA.163.47 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 163 :LEAIIDIAK 1y1pA 49 :LANLQKRWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33252 # 1ct5A.163.118 read from T0547.t2k.many.frag # found chain 1ct5A in template set T0547 163 :LEAIIDIAK 1ct5A 120 :AKKLNESRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33253 # 1iuqA.163.118 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 163 :LEAIIDIAK 1iuqA 120 :FKDIEEKLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33254 # 1wl8A.163.12 read from T0547.t2k.many.frag # found chain 1wl8A in training set T0547 163 :LEAIIDIAK 1wl8A 13 :VHRIWRTLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33255 # 8abp.163.70 read from T0547.t2k.many.frag # found chain 8abp in training set T0547 163 :LEAIIDIAK 8abp 71 :GSAIVAKAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33256 # 1rttA.163.62 read from T0547.t2k.many.frag # found chain 1rttA in training set T0547 163 :LEAIIDIAK 1rttA 63 :VERFREQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33257 # 1nt2A.163.93 read from T0547.t2k.many.frag # found chain 1nt2A in template set T0547 163 :LEAIIDIAK 1nt2A 94 :FEKLLELVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33258 # 1gxjA.163.68 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 163 :LEAIIDIAK 1gxjA 553 :AKAIVEFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33259 # 1f3vA.163.151 read from T0547.t2k.many.frag # found chain 1f3vA in template set T0547 163 :LEAIIDIAK 1f3vA 152 :LAELEDALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33260 # 2absA.163.119 read from T0547.t2k.many.frag # found chain 2absA in training set T0547 163 :LEAIIDIAK 2absA 100 :GQVLKELCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33261 # 2f02A.163.65 read from T0547.t2k.many.frag # found chain 2f02A in template set T0547 163 :LEAIIDIAK 2f02A 64 :GAFIANELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33262 # 1rw1A.163.12 read from T0547.t2k.many.frag # found chain 1rw1A in training set T0547 163 :LEAIIDIAK 1rw1A 14 :MKKARTWLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33263 # 1z3eB.163.53 read from T0547.t2k.many.frag # found chain 1z3eB in training set T0547 163 :LEAIIDIAK 1z3eB 296 :LEEVKAKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33264 # 1jubA.163.173 read from T0547.t2k.many.frag # found chain 1jubA in training set T0547 163 :LEAIIDIAK 1jubA 174 :FDIMAEILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33265 # 1ttzA.163.13 read from T0547.t2k.many.frag # found chain 1ttzA in template set T0547 163 :LEAIIDIAK 1ttzA 14 :CDQAVEALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33266 # 1nytA.163.154 read from T0547.t2k.many.frag # found chain 1nytA in training set T0547 163 :LEAIIDIAK 1nytA 155 :AEELAKLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33267 # 1vhuA.163.189 read from T0547.t2k.many.frag # found chain 1vhuA in training set T0547 163 :LEAIIDIAK 1vhuA 188 :AEVALKVFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33268 # 1r9jA.163.226 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 163 :LEAIIDIAK 1r9jA 225 :LRKALAEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33269 # 1srvA.163.41 read from T0547.t2k.many.frag # found chain 1srvA in template set T0547 163 :LEAIIDIAK 1srvA 233 :LLPILEQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33270 # 1wqgA.163.74 read from T0547.t2k.many.frag # found chain 1wqgA in template set T0547 163 :LEAIIDIAK 1wqgA 75 :LRAIETAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33271 # 1qo7A.163.25 read from T0547.t2k.many.frag # found chain 1qo7A in training set T0547 163 :LEAIIDIAK 1qo7A 28 :LDDLKTLVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33272 # 1knwA.163.126 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I169 (1knwA)V133 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A170 (1knwA)S134 because D (zeta) conformation "forbidden" or filtered. T0547 163 :LEAIID 1knwA 127 :LDQLGQ T0547 171 :K 1knwA 135 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=33274 # 1g61A.164.81 read from T0547.t2k.many.frag # found chain 1g61A in training set T0547 164 :EAIIDIAKE 1g61A 2082 :DRIKNFLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33275 # 1wn2A.164.68 read from T0547.t2k.many.frag # found chain 1wn2A in training set T0547 164 :EAIIDIAKE 1wn2A 69 :FKLKAEAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33276 # 1y1pA.164.48 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 164 :EAIIDIAKE 1y1pA 50 :ANLQKRWDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33277 # 1rttA.164.63 read from T0547.t2k.many.frag # found chain 1rttA in training set T0547 164 :EAIIDIAKE 1rttA 64 :ERFREQIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33278 # 2absA.164.120 read from T0547.t2k.many.frag # found chain 2absA in training set T0547 164 :EAIIDIAKE 2absA 101 :QVLKELCDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33279 # 1zzmA.164.78 read from T0547.t2k.many.frag # found chain 1zzmA in training set T0547 164 :EAIIDIAKE 1zzmA 79 :EQLQQALER Number of specific fragments extracted= 1 number of extra gaps= 0 total=33280 # 2f46A.164.91 read from T0547.t2k.many.frag # found chain 2f46A in training set T0547 164 :EAIIDIAKE 2f46A 91 :ETFRQLIGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33281 # 1ct5A.164.119 read from T0547.t2k.many.frag # found chain 1ct5A in template set T0547 164 :EAIIDIAKE 1ct5A 121 :KKLNESRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33282 # 2f02A.164.66 read from T0547.t2k.many.frag # found chain 2f02A in template set T0547 164 :EAIIDIAKE 2f02A 65 :AFIANELKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33283 # 8abp.164.71 read from T0547.t2k.many.frag # found chain 8abp in training set T0547 164 :EAIIDIAKE 8abp 72 :SAIVAKARG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33284 # 1em8A.164.49 read from T0547.t2k.many.frag # found chain 1em8A in template set T0547 164 :EAIIDIAKE 1em8A 50 :YRLDEALWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33285 # 1h6dA.164.190 read from T0547.t2k.many.frag # found chain 1h6dA in template set T0547 164 :EAIIDIAKE 1h6dA 191 :QRMIDAAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33286 # 1gxjA.164.69 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 164 :EAIIDIAKE 1gxjA 554 :KAIVEFLKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33287 # 2b4aA.164.28 read from T0547.t2k.many.frag # found chain 2b4aA in template set T0547 164 :EAIIDIAKE 2b4aA 17 :TLIQYHLNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33288 # 1wl8A.164.13 read from T0547.t2k.many.frag # found chain 1wl8A in training set T0547 164 :EAIIDIAKE 1wl8A 14 :HRIWRTLRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33289 # 1jubA.164.174 read from T0547.t2k.many.frag # found chain 1jubA in training set T0547 164 :EAIIDIAKE 1jubA 175 :DIMAEILNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33290 # 1z3eB.164.54 read from T0547.t2k.many.frag # found chain 1z3eB in training set T0547 164 :EAIIDIAKE 1z3eB 297 :EEVKAKLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33291 # 1k87A.164.414 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 164 :EAIIDIAKE 1k87A 415 :DYLIDLATR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33292 # 1rw1A.164.13 read from T0547.t2k.many.frag # found chain 1rw1A in training set T0547 164 :EAIIDIAKE 1rw1A 15 :KKARTWLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33293 # 1uf3A.164.21 read from T0547.t2k.many.frag # found chain 1uf3A in template set T0547 164 :EAIIDIAKE 1uf3A 22 :EKFVKLAPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33294 # 1iuqA.164.119 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 164 :EAIIDIAKE 1iuqA 121 :KDIEEKLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33295 1o4vA expands to /projects/compbio/data/pdb/1o4v.pdb.gz 1o4vA:Skipped atom 14, because occupancy 0.500 <= existing 0.500 in 1o4vA Skipped atom 16, because occupancy 0.500 <= existing 0.500 in 1o4vA Skipped atom 18, because occupancy 0.500 <= existing 0.500 in 1o4vA Skipped atom 20, because occupancy 0.500 <= existing 0.500 in 1o4vA Skipped atom 22, because occupancy 0.500 <= existing 0.500 in 1o4vA Skipped atom 24, because occupancy 0.500 <= existing 0.500 in 1o4vA Skipped atom 346, because occupancy 0.350 <= existing 0.650 in 1o4vA Skipped atom 348, because occupancy 0.350 <= existing 0.650 in 1o4vA Skipped atom 350, because occupancy 0.350 <= existing 0.650 in 1o4vA Skipped atom 356, because occupancy 0.350 <= existing 0.650 in 1o4vA Skipped atom 358, because occupancy 0.350 <= existing 0.650 in 1o4vA Skipped atom 360, because occupancy 0.350 <= existing 0.650 in 1o4vA Skipped atom 362, because occupancy 0.350 <= existing 0.650 in 1o4vA Skipped atom 364, because occupancy 0.350 <= existing 0.650 in 1o4vA Skipped atom 366, because occupancy 0.350 <= existing 0.650 in 1o4vA Skipped atom 368, because occupancy 0.350 <= existing 0.650 in 1o4vA Skipped atom 1181, because occupancy 0.350 <= existing 0.650 in 1o4vA Skipped atom 1183, because occupancy 0.350 <= existing 0.650 in 1o4vA Skipped atom 1185, because occupancy 0.350 <= existing 0.650 in 1o4vA Skipped atom 1187, because occupancy 0.350 <= existing 0.650 in 1o4vA Skipped atom 1189, because occupancy 0.350 <= existing 0.650 in 1o4vA # 1o4vA.164.29 read from T0547.t2k.many.frag # adding 1o4vA to template set # found chain 1o4vA in template set T0547 164 :EAIIDIAKE 1o4vA 18 :KQAAEILEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33296 # 1nt2A.164.94 read from T0547.t2k.many.frag # found chain 1nt2A in template set T0547 164 :EAIIDIAKE 1nt2A 95 :EKLLELVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33297 # 1ttzA.164.14 read from T0547.t2k.many.frag # found chain 1ttzA in template set T0547 164 :EAIIDIAKE 1ttzA 15 :DQAVEALAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33298 # 1vhuA.164.190 read from T0547.t2k.many.frag # found chain 1vhuA in training set T0547 164 :EAIIDIAKE 1vhuA 189 :EVALKVFER Number of specific fragments extracted= 1 number of extra gaps= 0 total=33299 # 1yiiA.164.121 read from T0547.t2k.many.frag # found chain 1yiiA in training set T0547 164 :EAIIDIAKE 1yiiA 123 :QNIKQVYMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33300 # 1f3vA.164.152 read from T0547.t2k.many.frag # found chain 1f3vA in template set T0547 164 :EAIIDIAKE 1f3vA 153 :AELEDALRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33301 1eswA expands to /projects/compbio/data/pdb/1esw.pdb.gz 1eswA:# 1eswA.164.196 read from T0547.t2k.many.frag # adding 1eswA to template set # found chain 1eswA in template set T0547 164 :EAIIDIAKE 1eswA 197 :GALKAEAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33302 # 1w6gA.164.18 read from T0547.t2k.many.frag # found chain 1w6gA in training set T0547 164 :EAIIDIAKE 1w6gA 21 :SEVQGILRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33303 # 1qo7A.164.26 read from T0547.t2k.many.frag # found chain 1qo7A in training set T0547 164 :EAIIDIAKE 1qo7A 29 :DDLKTLVRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33304 # 1y1pA.165.49 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 165 :AIIDIAKER 1y1pA 51 :NLQKRWDAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33305 # 8abp.165.72 read from T0547.t2k.many.frag # found chain 8abp in training set T0547 165 :AIIDIAKER 8abp 73 :AIVAKARGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33306 # 1h6dA.165.191 read from T0547.t2k.many.frag # found chain 1h6dA in template set T0547 165 :AIIDIAKER 1h6dA 192 :RMIDAAKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33307 # 1uf3A.165.22 read from T0547.t2k.many.frag # found chain 1uf3A in template set T0547 165 :AIIDIAKER 1uf3A 23 :KFVKLAPDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33308 # 1wn2A.165.69 read from T0547.t2k.many.frag # found chain 1wn2A in training set T0547 165 :AIIDIAKER 1wn2A 70 :KLKAEAEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33309 # 1gxjA.165.70 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 165 :AIIDIAKER 1gxjA 555 :AIVEFLKQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33310 # 1ct5A.165.120 read from T0547.t2k.many.frag # found chain 1ct5A in template set T0547 165 :AIIDIAKER 1ct5A 122 :KLNESRAKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33311 # 2f02A.165.67 read from T0547.t2k.many.frag # found chain 2f02A in template set T0547 165 :AIIDIAKER 2f02A 66 :FIANELKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33312 # 2absA.165.121 read from T0547.t2k.many.frag # found chain 2absA in training set T0547 165 :AIIDIAKER 2absA 102 :VLKELCDKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33313 # 1ttzA.165.15 read from T0547.t2k.many.frag # found chain 1ttzA in template set T0547 165 :AIIDIAKER 1ttzA 16 :QAVEALAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33314 # 1vhuA.165.191 read from T0547.t2k.many.frag # found chain 1vhuA in training set T0547 165 :AIIDIAKER 1vhuA 190 :VALKVFERS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33315 # 1iuqA.165.120 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 165 :AIIDIAKER 1iuqA 122 :DIEEKLQQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33316 # 1zzmA.165.79 read from T0547.t2k.many.frag # found chain 1zzmA in training set T0547 165 :AIIDIAKER 1zzmA 80 :QLQQALERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33317 # 1k87A.165.415 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 165 :AIIDIAKER 1k87A 416 :YLIDLATRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33318 # 2b4aA.165.29 read from T0547.t2k.many.frag # found chain 2b4aA in template set T0547 165 :AIIDIAKER 2b4aA 18 :LIQYHLNQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33319 # 1dg9A.165.97 read from T0547.t2k.many.frag # found chain 1dg9A in template set T0547 165 :AIIDIAKER 1dg9A 98 :DLNRKSNQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33320 # 1f3vA.165.153 read from T0547.t2k.many.frag # found chain 1f3vA in template set T0547 165 :AIIDIAKER 1f3vA 154 :ELEDALRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33321 # 1g61A.165.82 read from T0547.t2k.many.frag # found chain 1g61A in training set T0547 165 :AIIDIAKER 1g61A 2083 :RIKNFLKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33322 # 1em8A.165.50 read from T0547.t2k.many.frag # found chain 1em8A in template set T0547 165 :AIIDIAKER 1em8A 51 :RLDEALWAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33323 # 1e0tA.165.201 read from T0547.t2k.many.frag # found chain 1e0tA in template set T0547 165 :AIIDIAKER 1e0tA 202 :EIREHLKAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33324 1zvdA expands to /projects/compbio/data/pdb/1zvd.pdb.gz 1zvdA:Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 98, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 100, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 102, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 104, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 106, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 108, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 110, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 112, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 114, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 116, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 348, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 350, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 352, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 354, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 356, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 358, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 360, because occupancy 0.500 <= existing 0.500 in 1zvdA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1552, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1556, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1558, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1560, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1562, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1564, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1566, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1696, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1700, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1702, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 2319, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 2323, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 2325, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 2327, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 2329, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 2331, because occupancy 0.500 <= existing 0.500 in 1zvdA # 1zvdA.165.9 read from T0547.t2k.many.frag # adding 1zvdA to template set # found chain 1zvdA in template set T0547 165 :AIIDIAKER 1zvdA 378 :ILRQELSQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33325 # 1eswA.165.197 read from T0547.t2k.many.frag # found chain 1eswA in template set T0547 165 :AIIDIAKER 1eswA 198 :ALKAEAEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33326 # 2f46A.165.92 read from T0547.t2k.many.frag # found chain 2f46A in training set T0547 165 :AIIDIAKER 2f46A 92 :TFRQLIGQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33327 # 1wiwA.165.228 read from T0547.t2k.many.frag # found chain 1wiwA in template set T0547 165 :AIIDIAKER 1wiwA 229 :LAKEILESR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33328 # 1yiiA.165.122 read from T0547.t2k.many.frag # found chain 1yiiA in training set T0547 165 :AIIDIAKER 1yiiA 124 :NIKQVYMQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33329 # 2b9eA.165.139 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 165 :AIIDIAKER 2b9eA 266 :SMATLLARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33330 # 1w6gA.165.19 read from T0547.t2k.many.frag # found chain 1w6gA in training set T0547 165 :AIIDIAKER 1w6gA 22 :EVQGILRTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33331 # 2c5kT.165.20 read from T0547.t2k.many.frag # found chain 2c5kT in template set T0547 165 :AIIDIAKER 2c5kT 21 :RINNYITRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33332 # 1w5qA.165.183 read from T0547.t2k.many.frag # found chain 1w5qA in training set T0547 165 :AIIDIAKER 1w5qA 184 :AIREALESA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33333 # 1jubA.165.175 read from T0547.t2k.many.frag # found chain 1jubA in training set T0547 165 :AIIDIAKER 1jubA 176 :IMAEILNQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33334 # 1gxjA.166.71 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 166 :IIDIAKERF 1gxjA 556 :IVEFLKQNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33335 # 8abp.166.73 read from T0547.t2k.many.frag # found chain 8abp in training set T0547 166 :IIDIAKERF 8abp 74 :IVAKARGYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33336 # 1e0tA.166.202 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)F174 (1e0tA)G211 because T (delta_L) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1e0tA 203 :IREHLKAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=33337 # 1y1pA.166.50 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 166 :IIDIAKERF 1y1pA 52 :LQKRWDAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33338 # 1k87A.166.416 read from T0547.t2k.many.frag # found chain 1k87A in template set Warning: unaligning (T0547)F174 (1k87A)R425 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1k87A 417 :LIDLATRS Number of specific fragments extracted= 1 number of extra gaps= 1 total=33339 # 1ct5A.166.121 read from T0547.t2k.many.frag # found chain 1ct5A in template set T0547 166 :IIDIAKERF 1ct5A 123 :LNESRAKFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33340 # 1ttzA.166.16 read from T0547.t2k.many.frag # found chain 1ttzA in template set Warning: unaligning (T0547)F174 (1ttzA)R25 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1ttzA 17 :AVEALAQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=33341 # 1uf3A.166.23 read from T0547.t2k.many.frag # found chain 1uf3A in template set T0547 166 :IIDIAKERF 1uf3A 24 :FVKLAPDTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33342 # 1dg9A.166.98 read from T0547.t2k.many.frag # found chain 1dg9A in template set T0547 166 :IIDIAKERF 1dg9A 99 :LNRKSNQVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33343 # 1zzmA.166.80 read from T0547.t2k.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)R173 (1zzmA)R88 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKE 1zzmA 81 :LQQALER T0547 174 :F 1zzmA 89 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=33345 # 2absA.166.122 read from T0547.t2k.many.frag # found chain 2absA in training set Warning: unaligning (T0547)F174 (2absA)G111 because T (delta_L) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 2absA 103 :LKELCDKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=33346 # 2f02A.166.68 read from T0547.t2k.many.frag # found chain 2f02A in template set T0547 166 :IIDIAKERF 2f02A 67 :IANELKKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33347 # 2b4aA.166.30 read from T0547.t2k.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)F174 (2b4aA)G27 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 2b4aA 19 :IQYHLNQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33348 # 1h6dA.166.192 read from T0547.t2k.many.frag # found chain 1h6dA in template set T0547 166 :IIDIAKERF 1h6dA 193 :MIDAAKAAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33349 # 1zvdA.166.10 read from T0547.t2k.many.frag # found chain 1zvdA in template set T0547 166 :IIDIAKERF 1zvdA 379 :LRQELSQQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33350 # 1vhuA.166.192 read from T0547.t2k.many.frag # found chain 1vhuA in training set Warning: unaligning (T0547)F174 because last residue in template chain is (1vhuA)L199 T0547 166 :IIDIAKER 1vhuA 191 :ALKVFERS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33351 1nznA expands to /projects/compbio/data/pdb/1nzn.pdb.gz 1nznA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1nznA.166.56 read from T0547.t2k.many.frag # adding 1nznA to template set # found chain 1nznA in template set T0547 166 :IIDIAKERF 1nznA 57 :GIVLLEELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33352 # 1duvG.166.200 read from T0547.t2k.many.frag # found chain 1duvG in training set Warning: unaligning (T0547)F174 (1duvG)G209 because T (delta_L) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1duvG 201 :CRALAQQN Number of specific fragments extracted= 1 number of extra gaps= 1 total=33353 # 1w5qA.166.184 read from T0547.t2k.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)F174 (1w5qA)G193 because T (delta_L) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1w5qA 185 :IREALESA Number of specific fragments extracted= 1 number of extra gaps= 1 total=33354 # 1wiwA.166.229 read from T0547.t2k.many.frag # found chain 1wiwA in template set T0547 166 :IIDIAKERF 1wiwA 230 :AKEILESRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33355 2axpA expands to /projects/compbio/data/pdb/2axp.pdb.gz 2axpA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2axpA.166.44 read from T0547.t2k.many.frag # adding 2axpA to template set # found chain 2axpA in template set T0547 166 :IIDIAKERF 2axpA 45 :LFEHFNKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33356 # 1p1mA.166.151 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)R173 (1p1mA)W159 because G (3-10) conformation "forbidden" or filtered. T0547 166 :IIDIAKE 1p1mA 152 :NLKLYNE T0547 174 :F 1p1mA 160 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=33358 1n9eA expands to /projects/compbio/data/pdb/1n9e.pdb.gz 1n9eA:Skipped atom 679, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 681, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 1136, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 2432, because occupancy 0.330 <= existing 0.670 in 1n9eA Bad short name: C1 for alphabet: pdb_atoms Bad short name: C2 for alphabet: pdb_atoms Bad short name: O2 for alphabet: pdb_atoms Bad short name: C3 for alphabet: pdb_atoms Bad short name: C4 for alphabet: pdb_atoms Bad short name: O4 for alphabet: pdb_atoms Bad short name: C5 for alphabet: pdb_atoms Bad short name: O5 for alphabet: pdb_atoms Bad short name: C6 for alphabet: pdb_atoms Skipped atom 3923, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 3925, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 3927, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 3929, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 3931, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 3933, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 3935, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 3937, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 3939, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 3941, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 3943, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 3945, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 3947, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 3950, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 4202, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 4204, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 4206, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 4208, because occupancy 0.330 <= existing 0.670 in 1n9eA Skipped atom 4665, because occupancy 0.400 <= existing 0.600 in 1n9eA Skipped atom 4667, because occupancy 0.400 <= existing 0.600 in 1n9eA Skipped atom 4669, because occupancy 0.400 <= existing 0.600 in 1n9eA # 1n9eA.166.71 read from T0547.t2k.many.frag # adding 1n9eA to template set # found chain 1n9eA in template set T0547 166 :IIDIAKERF 1n9eA 72 :VLDLLHSTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33359 # 1wn2A.166.70 read from T0547.t2k.many.frag # found chain 1wn2A in training set Warning: unaligning (T0547)F174 (1wn2A)G79 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1wn2A 71 :LKAEAEKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33360 # 1o0sA.166.158 read from T0547.t2k.many.frag # found chain 1o0sA in template set T0547 166 :IIDIAKERF 1o0sA 159 :IYQILSNWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33361 # 1eswA.166.198 read from T0547.t2k.many.frag # found chain 1eswA in template set T0547 166 :IIDIAKERF 1eswA 199 :LKAEAEALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33362 # 1g61A.166.83 read from T0547.t2k.many.frag # found chain 1g61A in training set Warning: unaligning (T0547)F174 (1g61A)N2092 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1g61A 2084 :IKNFLKEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=33363 # 2ewcA.166.78 read from T0547.t2k.many.frag # found chain 2ewcA in template set T0547 166 :IIDIAKERF 2ewcA 79 :MEKMIKERF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33364 1jkoC expands to /projects/compbio/data/pdb/1jko.pdb.gz 1jkoC:# 1jkoC.166.13 read from T0547.t2k.many.frag # adding 1jkoC to template set # found chain 1jkoC in template set Warning: unaligning (T0547)R173 (1jkoC)G159 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKE 1jkoC 152 :ISRLLEK T0547 174 :F 1jkoC 160 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=33366 # 2b9eA.166.140 read from T0547.t2k.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)F174 (2b9eA)G275 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 2b9eA 267 :MATLLARA Number of specific fragments extracted= 1 number of extra gaps= 1 total=33367 # 1zvdA.167.11 read from T0547.t2k.many.frag # found chain 1zvdA in template set Warning: unaligning (T0547)K175 (1zvdA)P388 because P (beta_P) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1zvdA 380 :RQELSQQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=33368 # 1y1pA.167.51 read from T0547.t2k.many.frag # found chain 1y1pA in training set T0547 167 :IDIAKERFK 1y1pA 53 :QKRWDAKYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33369 # 1gxjA.167.72 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 167 :IDIAKERFK 1gxjA 557 :VEFLKQNEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33370 # 1e0tA.167.203 read from T0547.t2k.many.frag # found chain 1e0tA in template set T0547 167 :IDIAKERFK 1e0tA 204 :REHLKAHGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33371 # 2axpA.167.45 read from T0547.t2k.many.frag # found chain 2axpA in template set T0547 167 :IDIAKERFK 2axpA 46 :FEHFNKLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33372 # 1ct5A.167.122 read from T0547.t2k.many.frag # found chain 1ct5A in template set T0547 167 :IDIAKERFK 1ct5A 124 :NESRAKFQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33373 # 1o0sA.167.159 read from T0547.t2k.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)K175 (1o0sA)E168 because P (beta_P) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1o0sA 160 :YQILSNWH Number of specific fragments extracted= 1 number of extra gaps= 1 total=33374 1u24A expands to /projects/compbio/data/pdb/1u24.pdb.gz 1u24A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1u24A.167.105 read from T0547.t2k.many.frag # adding 1u24A to template set # found chain 1u24A in template set T0547 167 :IDIAKERFK 1u24A 106 :AAKLREKTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33375 # 1nznA.167.57 read from T0547.t2k.many.frag # found chain 1nznA in template set T0547 167 :IDIAKERFK 1nznA 58 :IVLLEELLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33376 # 1ttzA.167.17 read from T0547.t2k.many.frag # found chain 1ttzA in template set Warning: unaligning (T0547)F174 (1ttzA)R25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1ttzA)A26 because P (beta_P) conformation "forbidden" or filtered. T0547 167 :IDIAKER 1ttzA 18 :VEALAQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=33377 # 1zzmA.167.81 read from T0547.t2k.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)R173 (1zzmA)R88 because L (left) conformation "forbidden" or filtered. T0547 167 :IDIAKE 1zzmA 82 :QQALER T0547 174 :FK 1zzmA 89 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33379 # 1n9eA.167.72 read from T0547.t2k.many.frag # found chain 1n9eA in template set Warning: unaligning (T0547)K175 (1n9eA)N81 because N (gamma') conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1n9eA 73 :LDLLHSTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=33380 # 1dg9A.167.99 read from T0547.t2k.many.frag # found chain 1dg9A in template set T0547 167 :IDIAKERFK 1dg9A 100 :NRKSNQVKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33381 1gjwA expands to /projects/compbio/data/pdb/1gjw.pdb.gz 1gjwA:# 1gjwA.167.6 read from T0547.t2k.many.frag # adding 1gjwA to template set # found chain 1gjwA in template set T0547 167 :IDIAKERFK 1gjwA 7 :NRYCKEKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33382 # 1nnfA.167.16 read from T0547.t2k.many.frag # found chain 1nnfA in training set T0547 167 :IDIAKERFK 1nnfA 17 :AKAFEQETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33383 # 1p1mA.167.152 read from T0547.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)K175 (1p1mA)G161 because T (delta_L) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1p1mA 153 :LKLYNEWN Number of specific fragments extracted= 1 number of extra gaps= 1 total=33384 # 1zx0A.167.117 read from T0547.t2k.many.frag # found chain 1zx0A in template set T0547 167 :IDIAKERFK 1zx0A 118 :EDVAPTLPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33385 1vkhA expands to /projects/compbio/data/pdb/1vkh.pdb.gz 1vkhA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 315, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 317, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 319, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 321, because occupancy 0.500 <= existing 0.500 in 1vkhA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 601, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 603, because occupancy 0.500 <= existing 0.500 in 1vkhA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1579, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 1581, because occupancy 0.500 <= existing 0.500 in 1vkhA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1781, because occupancy 0.400 <= existing 0.600 in 1vkhA Skipped atom 1783, because occupancy 0.400 <= existing 0.600 in 1vkhA Skipped atom 2008, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 2010, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 2012, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 2014, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 2016, because occupancy 0.500 <= existing 0.500 in 1vkhA # 1vkhA.167.65 read from T0547.t2k.many.frag # adding 1vkhA to template set # found chain 1vkhA in template set T0547 167 :IDIAKERFK 1vkhA 54 :ANTIKSMDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33386 # 1w5qA.167.185 read from T0547.t2k.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)F174 (1w5qA)G193 because T (delta_L) conformation "forbidden" or filtered. T0547 167 :IDIAKER 1w5qA 186 :REALESA T0547 175 :K 1w5qA 194 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=33388 1z5zA expands to /projects/compbio/data/pdb/1z5z.pdb.gz 1z5zA:# 1z5zA.167.128 read from T0547.t2k.many.frag # adding 1z5zA to template set # found chain 1z5zA in template set Warning: unaligning (T0547)K175 (1z5zA)N772 because L (left) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1z5zA 764 :RNIIEKEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33389 # 1h70A.167.93 read from T0547.t2k.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)K175 (1h70A)P101 because P (beta_P) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1h70A 93 :EETVQRFY Number of specific fragments extracted= 1 number of extra gaps= 1 total=33390 # 1vlpA.167.319 read from T0547.t2k.many.frag # found chain 1vlpA in training set T0547 167 :IDIAKERFK 1vlpA 308 :SHHYHDVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33391 # 1vyiA.167.16 read from T0547.t2k.many.frag # found chain 1vyiA in training set T0547 167 :IDIAKERFK 1vyiA 202 :AHQIAESFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33392 1sv6A expands to /projects/compbio/data/pdb/1sv6.pdb.gz 1sv6A:# 1sv6A.167.13 read from T0547.t2k.many.frag # adding 1sv6A to template set # found chain 1sv6A in template set T0547 167 :IDIAKERFK 1sv6A 14 :RRAAEQGEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33393 # 1z7aA.167.148 read from T0547.t2k.many.frag # found chain 1z7aA in training set T0547 167 :IDIAKERFK 1z7aA 149 :IRILTELTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33394 # 1x7dA.167.170 read from T0547.t2k.many.frag # found chain 1x7dA in training set T0547 167 :IDIAKERFK 1x7dA 171 :IANLKEYSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33395 # 1jkoC.167.14 read from T0547.t2k.many.frag # found chain 1jkoC in template set T0547 167 :IDIAKERFK 1jkoC 153 :SRLLEKGHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33396 1h8eA expands to /projects/compbio/data/pdb/1h8e.pdb.gz 1h8eA:# 1h8eA.167.216 read from T0547.t2k.many.frag # adding 1h8eA to template set # found chain 1h8eA in template set Warning: unaligning (T0547)R173 (1h8eA)A223 because G (3-10) conformation "forbidden" or filtered. T0547 167 :IDIAKE 1h8eA 217 :VKRLTD T0547 174 :FK 1h8eA 224 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33398 # 1hbnA.167.111 read from T0547.t2k.many.frag # found chain 1hbnA in training set T0547 167 :IDIAKERFK 1hbnA 113 :HAVIEKRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33399 2avuE expands to /projects/compbio/data/pdb/2avu.pdb.gz 2avuE:# 2avuE.167.40 read from T0547.t2k.many.frag # adding 2avuE to template set # found chain 2avuE in template set T0547 167 :IDIAKERFK 2avuE 41 :IKLYKELRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33400 # 1zvdA.168.12 read from T0547.t2k.many.frag # found chain 1zvdA in template set T0547 168 :DIAKERFKP 1zvdA 381 :QELSQQQPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33401 # 1nnfA.168.17 read from T0547.t2k.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)F174 (1nnfA)T24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1nnfA)G25 because T (delta_L) conformation "forbidden" or filtered. T0547 168 :DIAKER 1nnfA 18 :KAFEQE T0547 176 :P 1nnfA 26 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=33403 # 2avuE.168.41 read from T0547.t2k.many.frag # found chain 2avuE in template set T0547 168 :DIAKERFKP 2avuE 42 :KLYKELRGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33404 # 1hbnA.168.112 read from T0547.t2k.many.frag # found chain 1hbnA in training set Warning: unaligning (T0547)K175 (1hbnA)G121 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1hbnA)K122 because E (beta_S) conformation "forbidden" or filtered. T0547 168 :DIAKERF 1hbnA 114 :AVIEKRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33405 # 1o0sA.168.160 read from T0547.t2k.many.frag # found chain 1o0sA in template set T0547 168 :DIAKERFKP 1o0sA 161 :QILSNWHEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33406 # 1gxjA.168.73 read from T0547.t2k.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)F174 (1gxjA)E564 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1gxjA)G566 because Y (epsilon') conformation "forbidden" or filtered. T0547 168 :DIAKER 1gxjA 558 :EFLKQN T0547 175 :K 1gxjA 565 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=33408 # 1whsA.168.163 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)F174 (1whsA)K163 because L (left) conformation "forbidden" or filtered. T0547 168 :DIAKER 1whsA 157 :QLVHRS T0547 175 :KP 1whsA 164 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33410 # 1z5zA.168.129 read from T0547.t2k.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)P176 (1z5zA)T773 because E (beta_S) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1z5zA 765 :NIIEKELN Number of specific fragments extracted= 1 number of extra gaps= 1 total=33411 # 1gjwA.168.7 read from T0547.t2k.many.frag # found chain 1gjwA in template set Warning: unaligning (T0547)P176 (1gjwA)G16 because T (delta_L) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1gjwA 8 :RYCKEKAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=33412 # 1y1pA.168.52 read from T0547.t2k.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)P176 (1y1pA)G62 because L (left) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1y1pA 54 :KRWDAKYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=33413 # 1h70A.168.94 read from T0547.t2k.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)K175 (1h70A)P101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1h70A)G102 because L (left) conformation "forbidden" or filtered. T0547 168 :DIAKERF 1h70A 94 :ETVQRFY Number of specific fragments extracted= 1 number of extra gaps= 1 total=33414 1za0A expands to /projects/compbio/data/pdb/1za0.pdb.gz 1za0A:Skipped atom 1214, because occupancy 0.500 <= existing 0.500 in 1za0A Skipped atom 1216, because occupancy 0.500 <= existing 0.500 in 1za0A Skipped atom 1218, because occupancy 0.500 <= existing 0.500 in 1za0A Skipped atom 1220, because occupancy 0.500 <= existing 0.500 in 1za0A Skipped atom 1222, because occupancy 0.500 <= existing 0.500 in 1za0A Skipped atom 1224, because occupancy 0.500 <= existing 0.500 in 1za0A Skipped atom 1226, because occupancy 0.500 <= existing 0.500 in 1za0A # 1za0A.168.22 read from T0547.t2k.many.frag # adding 1za0A to template set # found chain 1za0A in template set Warning: unaligning (T0547)K175 because of BadResidue code BAD_PEPTIDE in next template residue (1za0A)I31 Warning: unaligning (T0547)P176 because of BadResidue code BAD_PEPTIDE at template residue (1za0A)I31 T0547 168 :DIAKERF 1za0A 23 :TRHLDTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=33415 # 1n9eA.168.73 read from T0547.t2k.many.frag # found chain 1n9eA in template set Warning: unaligning (T0547)P176 (1n9eA)I82 because E (beta_S) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1n9eA 74 :DLLHSTYN Number of specific fragments extracted= 1 number of extra gaps= 1 total=33416 # 1ct5A.168.123 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)P176 (1ct5A)D133 because G (3-10) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1ct5A 125 :ESRAKFQP Number of specific fragments extracted= 1 number of extra gaps= 1 total=33417 # 1zx0A.168.118 read from T0547.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)P176 (1zx0A)G127 because L (left) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1zx0A 119 :DVAPTLPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=33418 # 1sr9A.168.200 read from T0547.t2k.many.frag # found chain 1sr9A in template set T0547 168 :DIAKERFKP 1sr9A 201 :EQAAKYPGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33419 # 1vyiA.168.17 read from T0547.t2k.many.frag # found chain 1vyiA in training set Warning: unaligning (T0547)K175 (1vyiA)S210 because G (3-10) conformation "forbidden" or filtered. T0547 168 :DIAKERF 1vyiA 203 :HQIAESF T0547 176 :P 1vyiA 211 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=33421 # 2axpA.168.46 read from T0547.t2k.many.frag # found chain 2axpA in template set T0547 168 :DIAKERFKP 2axpA 47 :EHFNKLADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33422 # 2ewcA.168.80 read from T0547.t2k.many.frag # found chain 2ewcA in template set Warning: unaligning (T0547)P176 (2ewcA)G89 because T (delta_L) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 2ewcA 81 :KMIKERFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=33423 # 1u24A.168.106 read from T0547.t2k.many.frag # found chain 1u24A in template set T0547 168 :DIAKERFKP 1u24A 107 :AKLREKTAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33424 # 1nkiA.168.19 read from T0547.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)F174 (1nkiA)L26 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1nkiA)G27 because T (delta_L) conformation "forbidden" or filtered. T0547 168 :DIAKER 1nkiA 20 :AFYRDL T0547 176 :P 1nkiA 28 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=33426 # 1w5qA.168.186 read from T0547.t2k.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)F174 (1w5qA)G193 because T (delta_L) conformation "forbidden" or filtered. T0547 168 :DIAKER 1w5qA 187 :EALESA T0547 175 :KP 1w5qA 194 :HT Number of specific fragments extracted= 2 number of extra gaps= 1 total=33428 # 1p1mA.168.153 read from T0547.t2k.many.frag # found chain 1p1mA in training set T0547 168 :DIAKERFKP 1p1mA 154 :KLYNEWNGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33429 # 1ttzA.168.18 read from T0547.t2k.many.frag # found chain 1ttzA in template set Warning: unaligning (T0547)R173 (1ttzA)A24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F174 (1ttzA)R25 because L (left) conformation "forbidden" or filtered. T0547 168 :DIAKE 1ttzA 19 :EALAQ T0547 175 :KP 1ttzA 26 :AG Number of specific fragments extracted= 2 number of extra gaps= 1 total=33431 # 1vkhA.168.66 read from T0547.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)P176 (1vkhA)E63 because G (3-10) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1vkhA 55 :NTIKSMDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=33432 # 1atg.168.18 read from T0547.t2k.many.frag # found chain 1atg in training set Warning: unaligning (T0547)F174 (1atg)T26 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1atg)G27 because T (delta_L) conformation "forbidden" or filtered. T0547 168 :DIAKER 1atg 20 :GQFAKQ T0547 176 :P 1atg 28 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=33434 # 1dg9A.168.100 read from T0547.t2k.many.frag # found chain 1dg9A in template set T0547 168 :DIAKERFKP 1dg9A 101 :RKSNQVKNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=33435 # 1e0tA.168.204 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)R173 (1e0tA)H210 because G (3-10) conformation "forbidden" or filtered. T0547 168 :DIAKE 1e0tA 205 :EHLKA T0547 174 :FKP 1e0tA 211 :GGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33437 1qhxA expands to /projects/compbio/data/pdb/1qhx.pdb.gz 1qhxA:# 1qhxA.168.20 read from T0547.t2k.many.frag # adding 1qhxA to template set # found chain 1qhxA in template set T0547 168 :DIAKERFKP 1qhxA 21 :RCLQSVLPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33438 # 1bkrA.168.67 read from T0547.t2k.many.frag # found chain 1bkrA in training set T0547 168 :DIAKERFKP 1bkrA 68 :NLAEQHLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33439 # 1nnfA.169.18 read from T0547.t2k.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)K175 (1nnfA)G25 because T (delta_L) conformation "forbidden" or filtered. T0547 169 :IAKERF 1nnfA 19 :AFEQET T0547 176 :PK 1nnfA 26 :IK Number of specific fragments extracted= 2 number of extra gaps= 1 total=33441 # 1hbnA.169.113 read from T0547.t2k.many.frag # found chain 1hbnA in training set Warning: unaligning (T0547)K175 (1hbnA)G121 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1hbnA)K122 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKERF 1hbnA 115 :VIEKRL T0547 177 :K 1hbnA 123 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=33443 # 2avuE.169.42 read from T0547.t2k.many.frag # found chain 2avuE in template set T0547 169 :IAKERFKPK 2avuE 43 :LYKELRGSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33444 # 1zvdA.169.13 read from T0547.t2k.many.frag # found chain 1zvdA in template set Warning: unaligning (T0547)K175 (1zvdA)P388 because P (beta_P) conformation "forbidden" or filtered. T0547 169 :IAKERF 1zvdA 382 :ELSQQQ T0547 176 :PK 1zvdA 389 :QA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33446 # 1z5zA.169.130 read from T0547.t2k.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)P176 (1z5zA)T773 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1z5zA 766 :IIEKELN T0547 177 :K 1z5zA 774 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=33448 # 1nkiA.169.20 read from T0547.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)K175 (1nkiA)G27 because T (delta_L) conformation "forbidden" or filtered. T0547 169 :IAKERF 1nkiA 21 :FYRDLL T0547 176 :PK 1nkiA 28 :FR Number of specific fragments extracted= 2 number of extra gaps= 1 total=33450 # 1atg.169.19 read from T0547.t2k.many.frag # found chain 1atg in training set T0547 169 :IAKERFKPK 1atg 21 :QFAKQTGHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33451 # 1whsA.169.164 read from T0547.t2k.many.frag # found chain 1whsA in template set T0547 169 :IAKERFKPK 1whsA 158 :LVHRSKNPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33452 # 1gjwA.169.8 read from T0547.t2k.many.frag # found chain 1gjwA in template set Warning: unaligning (T0547)P176 (1gjwA)G16 because T (delta_L) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1gjwA 9 :YCKEKAT T0547 177 :K 1gjwA 17 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=33454 # 1h70A.169.95 read from T0547.t2k.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)K175 (1h70A)P101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1h70A)G102 because L (left) conformation "forbidden" or filtered. T0547 169 :IAKERF 1h70A 95 :TVQRFY T0547 177 :K 1h70A 103 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=33456 # 1n9eA.169.74 read from T0547.t2k.many.frag # found chain 1n9eA in template set Warning: unaligning (T0547)P176 (1n9eA)I82 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1n9eA 75 :LLHSTYN T0547 177 :K 1n9eA 83 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=33458 # 1vyiA.169.18 read from T0547.t2k.many.frag # found chain 1vyiA in training set T0547 169 :IAKERFKPK 1vyiA 204 :QIAESFSKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33459 # 1za0A.169.23 read from T0547.t2k.many.frag # found chain 1za0A in template set Warning: unaligning (T0547)K175 because of BadResidue code BAD_PEPTIDE in next template residue (1za0A)I31 Warning: unaligning (T0547)P176 because of BadResidue code BAD_PEPTIDE at template residue (1za0A)I31 T0547 169 :IAKERF 1za0A 24 :RHLDTE T0547 177 :K 1za0A 32 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=33461 # 1vdkA.169.248 read from T0547.t2k.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)K175 (1vdkA)G255 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1vdkA)L256 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKERF 1vdkA 249 :YLAEET T0547 177 :K 1vdkA 257 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=33463 # 1qhxA.169.21 read from T0547.t2k.many.frag # found chain 1qhxA in template set T0547 169 :IAKERFKPK 1qhxA 22 :CLQSVLPEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33464 # 2ewcA.169.81 read from T0547.t2k.many.frag # found chain 2ewcA in template set Warning: unaligning (T0547)P176 (2ewcA)G89 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2ewcA)R90 because D (zeta) conformation "forbidden" or filtered. T0547 169 :IAKERFK 2ewcA 82 :MIKERFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=33465 # 1bkrA.169.68 read from T0547.t2k.many.frag # found chain 1bkrA in training set Warning: unaligning (T0547)K175 (1bkrA)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 169 :IAKERF 1bkrA 69 :LAEQHL T0547 176 :PK 1bkrA 76 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=33467 # 1h99A.169.26 read from T0547.t2k.many.frag # found chain 1h99A in training set Warning: unaligning (T0547)K175 (1h99A)G86 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1h99A)K87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1h99A)K88 because P (beta_P) conformation "forbidden" or filtered. T0547 169 :IAKERF 1h99A 80 :YAKLQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33468 # 1vkhA.169.67 read from T0547.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)P176 (1vkhA)E63 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1vkhA)S64 because L (left) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1vkhA 56 :TIKSMDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=33469 # 1y1pA.169.53 read from T0547.t2k.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)P176 (1y1pA)G62 because L (left) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1y1pA 55 :RWDAKYP T0547 177 :K 1y1pA 63 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=33471 # 2axpA.169.47 read from T0547.t2k.many.frag # found chain 2axpA in template set Warning: unaligning (T0547)K177 (2axpA)D56 because Y (epsilon') conformation "forbidden" or filtered. T0547 169 :IAKERFKP 2axpA 48 :HFNKLADE Number of specific fragments extracted= 1 number of extra gaps= 1 total=33472 # 1sr9A.169.201 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)R173 (1sr9A)Y206 because D (zeta) conformation "forbidden" or filtered. T0547 169 :IAKE 1sr9A 202 :QAAK T0547 174 :FKPK 1sr9A 207 :PGTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=33474 # 2a2cA.169.304 read from T0547.t2k.many.frag # found chain 2a2cA in training set T0547 169 :IAKERFKPK 2a2cA 285 :VTEDALHPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33475 # 1mw9X.169.15 read from T0547.t2k.many.frag # found chain 1mw9X in training set Warning: unaligning (T0547)R173 (1mw9X)Y20 because G (3-10) conformation "forbidden" or filtered. T0547 169 :IAKE 1mw9X 16 :TINK T0547 174 :FKPK 1mw9X 21 :LGSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=33477 # 1ct5A.169.124 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)P176 (1ct5A)D133 because G (3-10) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1ct5A 126 :SRAKFQP T0547 177 :K 1ct5A 134 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=33479 # 1u4bA.169.240 read from T0547.t2k.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)K171 (1u4bA)F539 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1u4bA)P545 because P (beta_P) conformation "forbidden" or filtered. T0547 169 :IA 1u4bA 537 :IL T0547 172 :ERFKP 1u4bA 540 :EKLQL Number of specific fragments extracted= 2 number of extra gaps= 2 total=33481 # 1kyqA.169.125 read from T0547.t2k.many.frag # found chain 1kyqA in template set T0547 169 :IAKERFKPK 1kyqA 126 :LCKERFGKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33482 # 1pdo.169.18 read from T0547.t2k.many.frag # found chain 1pdo in training set Warning: unaligning (T0547)F174 (1pdo)L25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1pdo)G26 because S (epsilon) conformation "forbidden" or filtered. T0547 169 :IAKER 1pdo 20 :TAEML T0547 176 :PK 1pdo 27 :EQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=33484 # 1w8sA.169.63 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P176 (1w8sA)G71 because T (delta_L) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1w8sA 64 :IAEKYYD T0547 177 :K 1w8sA 72 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=33486 # 1yzyA.169.292 read from T0547.t2k.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)R173 (1yzyA)N296 because G (3-10) conformation "forbidden" or filtered. T0547 169 :IAKE 1yzyA 292 :WVIA T0547 174 :FKPK 1yzyA 297 :LDSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33488 # 2avuE.170.43 read from T0547.t2k.many.frag # found chain 2avuE in template set T0547 170 :AKERFKPKP 2avuE 44 :YKELRGSPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33489 # 1nnfA.170.19 read from T0547.t2k.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)K175 (1nnfA)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nnfA)V28 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERF 1nnfA 20 :FEQET T0547 176 :PK 1nnfA 26 :IK Number of specific fragments extracted= 2 number of extra gaps= 2 total=33491 # 1z5zA.170.131 read from T0547.t2k.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)K175 (1z5zA)N772 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z5zA)T773 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1z5zA)E774 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1z5zA)V775 because D (zeta) conformation "forbidden" or filtered. T0547 170 :AKERF 1z5zA 767 :IEKEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33492 # 1h99A.170.27 read from T0547.t2k.many.frag # found chain 1h99A in training set Warning: unaligning (T0547)K175 (1h99A)G86 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1h99A)K87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1h99A)L89 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERF 1h99A 81 :AKLQL T0547 177 :K 1h99A 88 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=33494 # 1i24A.170.70 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 170 :AKERFKPKP 1i24A 61 :WKALTGKSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33495 # 1pdo.170.19 read from T0547.t2k.many.frag # found chain 1pdo in training set Warning: unaligning (T0547)P178 (1pdo)E29 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKPK 1pdo 21 :AEMLLGEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=33496 # 1bli.170.247 read from T0547.t2k.many.frag # found chain 1bli in template set Warning: unaligning (T0547)P178 (1bli)M256 because L (left) conformation "forbidden" or filtered. T0547 170 :AKERFKPK 1bli 248 :VREKTGKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=33497 # 1vdkA.170.249 read from T0547.t2k.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)P176 (1vdkA)L256 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFK 1vdkA 250 :LAEETG T0547 177 :KP 1vdkA 257 :PF Number of specific fragments extracted= 2 number of extra gaps= 1 total=33499 # 1hbnA.170.114 read from T0547.t2k.many.frag # found chain 1hbnA in training set Warning: unaligning (T0547)K175 (1hbnA)G121 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1hbnA)K122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1hbnA)V124 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERF 1hbnA 116 :IEKRL T0547 177 :K 1hbnA 123 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=33501 # 1atg.170.20 read from T0547.t2k.many.frag # found chain 1atg in training set Warning: unaligning (T0547)P178 (1atg)V30 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKPK 1atg 22 :FAKQTGHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=33502 # 1qhxA.170.22 read from T0547.t2k.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)P178 (1qhxA)W31 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKPK 1qhxA 23 :LQSVLPEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=33503 # 1kyqA.170.126 read from T0547.t2k.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)K175 (1kyqA)G132 because S (epsilon) conformation "forbidden" or filtered. T0547 170 :AKERF 1kyqA 127 :CKERF T0547 176 :PKP 1kyqA 133 :KQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=33505 # 1nkiA.170.21 read from T0547.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)F174 (1nkiA)L26 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1nkiA)G27 because T (delta_L) conformation "forbidden" or filtered. T0547 170 :AKER 1nkiA 22 :YRDL T0547 176 :PKP 1nkiA 28 :FRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33507 # 1mw9X.170.16 read from T0547.t2k.many.frag # found chain 1mw9X in training set Warning: unaligning (T0547)P178 (1mw9X)Y25 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKPK 1mw9X 17 :INKYLGSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=33508 # 1bkrA.170.69 read from T0547.t2k.many.frag # found chain 1bkrA in training set T0547 170 :AKERFKPKP 1bkrA 70 :AEQHLGLTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33509 # 1w8sA.170.64 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P176 (1w8sA)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1w8sA)V73 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFK 1w8sA 65 :AEKYYD T0547 177 :K 1w8sA 72 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=33511 # 1nu0A.170.82 read from T0547.t2k.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)K175 (1nu0A)G88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nu0A)V91 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERF 1nu0A 83 :IHGRF T0547 176 :PK 1nu0A 89 :VE Number of specific fragments extracted= 2 number of extra gaps= 2 total=33513 # 1whsA.170.165 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)F174 (1whsA)K163 because L (left) conformation "forbidden" or filtered. T0547 170 :AKER 1whsA 159 :VHRS T0547 175 :KPKP 1whsA 164 :NPVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33515 # 1h70A.170.96 read from T0547.t2k.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)P176 (1h70A)G102 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1h70A)V104 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFK 1h70A 96 :VQRFYP T0547 177 :K 1h70A 103 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=33517 # 2ewcA.170.82 read from T0547.t2k.many.frag # found chain 2ewcA in template set Warning: unaligning (T0547)K175 (2ewcA)N88 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (2ewcA)G89 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2ewcA)Y91 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERF 2ewcA 83 :IKERF T0547 177 :K 2ewcA 90 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=33519 # 1z7aA.170.151 read from T0547.t2k.many.frag # found chain 1z7aA in training set Warning: unaligning (T0547)K175 (1z7aA)G157 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z7aA)Q158 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1z7aA)R159 because P (beta_P) conformation "forbidden" or filtered. T0547 170 :AKERF 1z7aA 152 :LTELT T0547 178 :P 1z7aA 160 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=33521 # 1zvdA.170.14 read from T0547.t2k.many.frag # found chain 1zvdA in template set T0547 170 :AKERFKPKP 1zvdA 383 :LSQQQPQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33522 # 1wo8A.170.41 read from T0547.t2k.many.frag # found chain 1wo8A in training set Warning: unaligning (T0547)K175 (1wo8A)G47 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1wo8A)A49 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1wo8A)V50 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERF 1wo8A 42 :IQEAT T0547 176 :P 1wo8A 48 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=33524 # 1sr9A.170.202 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)R173 (1sr9A)Y206 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1sr9A)G208 because T (delta_L) conformation "forbidden" or filtered. T0547 170 :AKE 1sr9A 203 :AAK T0547 174 :F 1sr9A 207 :P T0547 176 :PKP 1sr9A 209 :TQW Number of specific fragments extracted= 3 number of extra gaps= 2 total=33527 # 1jl1A.170.54 read from T0547.t2k.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)P176 (1jl1A)E61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1jl1A)A63 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFK 1jl1A 55 :ALEALK T0547 177 :K 1jl1A 62 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=33529 # 1vkhA.170.68 read from T0547.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)P176 (1vkhA)E63 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1vkhA)S64 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1vkhA)T65 because G (3-10) conformation "forbidden" or filtered. T0547 170 :AKERFK 1vkhA 57 :IKSMDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=33530 # 1o0sA.170.162 read from T0547.t2k.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)K175 (1o0sA)E168 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1o0sA)D170 because N (gamma') conformation "forbidden" or filtered. T0547 170 :AKERF 1o0sA 163 :LSNWH T0547 176 :P 1o0sA 169 :E T0547 178 :P 1o0sA 171 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=33533 # 1gjwA.170.9 read from T0547.t2k.many.frag # found chain 1gjwA in template set Warning: unaligning (T0547)P176 (1gjwA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1gjwA)K17 because P (beta_P) conformation "forbidden" or filtered. T0547 170 :AKERFK 1gjwA 10 :CKEKAT T0547 178 :P 1gjwA 18 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=33535 # 1vyiA.170.19 read from T0547.t2k.many.frag # found chain 1vyiA in training set Warning: unaligning (T0547)P178 (1vyiA)Y213 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKPK 1vyiA 205 :IAESFSKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=33536 # 1y8aA.170.134 read from T0547.t2k.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)P178 (1y8aA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0547 170 :AKERFKPK 1y8aA 113 :TASMIGVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=33537 # 1bli.171.248 read from T0547.t2k.many.frag # found chain 1bli in template set Warning: unaligning (T0547)K175 (1bli)G253 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1bli)M256 because L (left) conformation "forbidden" or filtered. T0547 171 :KERF 1bli 249 :REKT T0547 176 :PK 1bli 254 :KE T0547 179 :N 1bli 257 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=33540 # 1i24A.171.71 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 171 :KERFKPKPN 1i24A 62 :KALTGKSIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33541 # 1qhxA.171.23 read from T0547.t2k.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)P178 (1qhxA)W31 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFKPK 1qhxA 24 :QSVLPEP T0547 179 :N 1qhxA 32 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=33543 # 1z5zA.171.132 read from T0547.t2k.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)K175 (1z5zA)N772 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z5zA)T773 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1z5zA)V775 because D (zeta) conformation "forbidden" or filtered. T0547 171 :KERF 1z5zA 768 :EKEL T0547 177 :K 1z5zA 774 :E T0547 179 :N 1z5zA 776 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=33546 # 1kyqA.171.127 read from T0547.t2k.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)K175 (1kyqA)G132 because S (epsilon) conformation "forbidden" or filtered. T0547 171 :KERF 1kyqA 128 :KERF T0547 176 :PKPN 1kyqA 133 :KQQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33548 # 1z7aA.171.152 read from T0547.t2k.many.frag # found chain 1z7aA in training set Warning: unaligning (T0547)P176 (1z7aA)Q158 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFK 1z7aA 153 :TELTG T0547 177 :KPN 1z7aA 159 :RPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33550 # 1w8sA.171.65 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P176 (1w8sA)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1w8sA)V73 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFK 1w8sA 66 :EKYYD T0547 177 :K 1w8sA 72 :S T0547 179 :N 1w8sA 74 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=33553 # 1vdkA.171.250 read from T0547.t2k.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)K175 (1vdkA)G255 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1vdkA)L256 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1vdkA)P257 because N (gamma') conformation "forbidden" or filtered. T0547 171 :KERF 1vdkA 251 :AEET T0547 178 :PN 1vdkA 258 :FR Number of specific fragments extracted= 2 number of extra gaps= 1 total=33555 # 1nnfA.171.20 read from T0547.t2k.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)K175 (1nnfA)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nnfA)V28 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1nnfA 21 :EQET T0547 176 :PK 1nnfA 26 :IK T0547 179 :N 1nnfA 29 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=33558 # 1jl1A.171.55 read from T0547.t2k.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)P176 (1jl1A)E61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1jl1A)H62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1jl1A)A63 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFK 1jl1A 56 :LEALK T0547 179 :N 1jl1A 64 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=33560 # 1nu0A.171.83 read from T0547.t2k.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)K175 (1nu0A)G88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nu0A)V91 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1nu0A 84 :HGRF T0547 176 :PK 1nu0A 89 :VE T0547 179 :N 1nu0A 92 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=33563 # 2avuE.171.44 read from T0547.t2k.many.frag # found chain 2avuE in template set T0547 171 :KERFKPKPN 2avuE 45 :KELRGSPPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33564 # 1h99A.171.28 read from T0547.t2k.many.frag # found chain 1h99A in training set Warning: unaligning (T0547)K175 (1h99A)G86 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1h99A)K87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1h99A)L89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1h99A)N90 because P (beta_P) conformation "forbidden" or filtered. T0547 171 :KERF 1h99A 82 :KLQL T0547 177 :K 1h99A 88 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=33566 # 1mw9X.171.17 read from T0547.t2k.many.frag # found chain 1mw9X in training set Warning: unaligning (T0547)R173 (1mw9X)Y20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1mw9X)Y25 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KE 1mw9X 18 :NK T0547 174 :FKPK 1mw9X 21 :LGSD T0547 179 :N 1mw9X 26 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=33569 # 1pdo.171.20 read from T0547.t2k.many.frag # found chain 1pdo in training set Warning: unaligning (T0547)P178 (1pdo)E29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1pdo)N30 because L (left) conformation "forbidden" or filtered. T0547 171 :KERFKPK 1pdo 22 :EMLLGEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=33570 # 1atg.171.21 read from T0547.t2k.many.frag # found chain 1atg in training set Warning: unaligning (T0547)K175 (1atg)G27 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1atg)V30 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1atg 23 :AKQT T0547 176 :PK 1atg 28 :HA T0547 179 :N 1atg 31 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=33573 # 1h70A.171.97 read from T0547.t2k.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)P176 (1h70A)G102 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1h70A)V104 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFK 1h70A 97 :QRFYP T0547 177 :K 1h70A 103 :K T0547 179 :N 1h70A 105 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=33576 # 1n8kA.171.254 read from T0547.t2k.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)P176 (1n8kA)G260 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1n8kA)G261 because S (epsilon) conformation "forbidden" or filtered. T0547 171 :KERFK 1n8kA 255 :TEMSN T0547 178 :PN 1n8kA 262 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=33578 # 1o0sA.171.163 read from T0547.t2k.many.frag # found chain 1o0sA in template set T0547 171 :KERFKPKPN 1o0sA 164 :SNWHEEDVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33579 # 1wo8A.171.42 read from T0547.t2k.many.frag # found chain 1wo8A in training set Warning: unaligning (T0547)P178 (1wo8A)V50 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFKPK 1wo8A 43 :QEATGLA T0547 179 :N 1wo8A 51 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=33581 # 1hbnA.171.115 read from T0547.t2k.many.frag # found chain 1hbnA in training set Warning: unaligning (T0547)K175 (1hbnA)G121 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1hbnA)K122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1hbnA)V124 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1hbnA)T125 because Y (epsilon') conformation "forbidden" or filtered. T0547 171 :KERF 1hbnA 117 :EKRL T0547 177 :K 1hbnA 123 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=33583 # 2ewcA.171.83 read from T0547.t2k.many.frag # found chain 2ewcA in template set Warning: unaligning (T0547)P176 (2ewcA)G89 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2ewcA)Y91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 because of BadResidue code BAD_PEPTIDE in next template residue (2ewcA)A93 T0547 171 :KERFK 2ewcA 84 :KERFN T0547 177 :K 2ewcA 90 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=33585 # 1m55A.171.67 read from T0547.t2k.many.frag # found chain 1m55A in training set Warning: unaligning (T0547)P176 (1m55A)Q73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1m55A)K76 because P (beta_P) conformation "forbidden" or filtered. T0547 171 :KERFK 1m55A 68 :NKFSK T0547 177 :KP 1m55A 74 :ES Number of specific fragments extracted= 2 number of extra gaps= 2 total=33587 # 1whsA.171.166 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)F174 (1whsA)K163 because L (left) conformation "forbidden" or filtered. T0547 171 :KER 1whsA 160 :HRS T0547 175 :KPKPN 1whsA 164 :NPVIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=33589 1t0hB expands to /projects/compbio/data/pdb/1t0h.pdb.gz 1t0hB:# 1t0hB.171.52 read from T0547.t2k.many.frag # adding 1t0hB to template set # found chain 1t0hB in template set Warning: unaligning (T0547)K175 (1t0hB)E258 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1t0hB)G259 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1t0hB)I261 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1t0hB 254 :KHRF T0547 177 :K 1t0hB 260 :R T0547 179 :N 1t0hB 262 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=33592 # 1vkhA.171.69 read from T0547.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)P176 (1vkhA)E63 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1vkhA)S64 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1vkhA)T65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1vkhA)V66 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFK 1vkhA 58 :KSMDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=33593 # 1sr9A.171.203 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)K175 (1sr9A)G208 because T (delta_L) conformation "forbidden" or filtered. T0547 171 :KERF 1sr9A 204 :AKYP T0547 176 :PKPN 1sr9A 209 :TQWR Number of specific fragments extracted= 2 number of extra gaps= 1 total=33595 # 1su8A.171.386 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)P178 (1su8A)V394 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFKPK 1su8A 387 :KRRKGKP T0547 179 :N 1su8A 395 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=33597 # 1tr9A.171.50 read from T0547.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)P178 (1tr9A)I57 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFKPK 1tr9A 50 :RQAAKRP T0547 179 :N 1tr9A 58 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=33599 # 1r5yA.171.89 read from T0547.t2k.many.frag # found chain 1r5yA in training set Warning: unaligning (T0547)P176 (1r5yA)W95 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFK 1r5yA 90 :HSFMG T0547 177 :KPN 1r5yA 96 :DRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33601 # 1bli.172.249 read from T0547.t2k.many.frag # found chain 1bli in template set Warning: unaligning (T0547)K175 (1bli)G253 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1bli)M256 because L (left) conformation "forbidden" or filtered. T0547 172 :ERF 1bli 250 :EKT T0547 176 :PK 1bli 254 :KE T0547 179 :NI 1bli 257 :FT Number of specific fragments extracted= 3 number of extra gaps= 2 total=33604 # 1i24A.172.72 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 172 :ERFKPKPNI 1i24A 63 :ALTGKSIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33605 # 1qhxA.172.24 read from T0547.t2k.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)P178 (1qhxA)W31 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1qhxA)L32 because P (beta_P) conformation "forbidden" or filtered. T0547 172 :ERFKPK 1qhxA 25 :SVLPEP T0547 180 :I 1qhxA 33 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=33607 # 1kyqA.172.128 read from T0547.t2k.many.frag # found chain 1kyqA in template set T0547 172 :ERFKPKPNI 1kyqA 129 :ERFGKQQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33608 # 1jl1A.172.56 read from T0547.t2k.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)P176 (1jl1A)E61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1jl1A)A63 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFK 1jl1A 57 :EALK T0547 177 :K 1jl1A 62 :H T0547 179 :NI 1jl1A 64 :EV Number of specific fragments extracted= 3 number of extra gaps= 2 total=33611 # 1w8sA.172.66 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P176 (1w8sA)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1w8sA)V73 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFK 1w8sA 67 :KYYD T0547 177 :K 1w8sA 72 :S T0547 179 :NI 1w8sA 74 :PL Number of specific fragments extracted= 3 number of extra gaps= 2 total=33614 # 1nnfA.172.21 read from T0547.t2k.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)K175 (1nnfA)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nnfA)V28 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERF 1nnfA 22 :QET T0547 176 :PK 1nnfA 26 :IK T0547 179 :NI 1nnfA 29 :TL Number of specific fragments extracted= 3 number of extra gaps= 2 total=33617 # 1nu0A.172.84 read from T0547.t2k.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)K175 (1nu0A)G88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nu0A)V91 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERF 1nu0A 85 :GRF T0547 176 :PK 1nu0A 89 :VE T0547 179 :NI 1nu0A 92 :KL Number of specific fragments extracted= 3 number of extra gaps= 2 total=33620 # 1mw9X.172.18 read from T0547.t2k.many.frag # found chain 1mw9X in training set Warning: unaligning (T0547)P178 (1mw9X)Y25 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFKPK 1mw9X 19 :KYLGSD T0547 179 :NI 1mw9X 26 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33622 # 1z7aA.172.153 read from T0547.t2k.many.frag # found chain 1z7aA in training set Warning: unaligning (T0547)K175 (1z7aA)G157 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z7aA)Q158 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1z7aA)R159 because P (beta_P) conformation "forbidden" or filtered. T0547 172 :ERF 1z7aA 154 :ELT T0547 178 :PNI 1z7aA 160 :PVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=33624 # 1atg.172.22 read from T0547.t2k.many.frag # found chain 1atg in training set Warning: unaligning (T0547)P178 (1atg)V30 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFKPK 1atg 24 :KQTGHA T0547 179 :NI 1atg 31 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33626 # 1z5zA.172.133 read from T0547.t2k.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)K175 (1z5zA)N772 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z5zA)T773 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1z5zA)V775 because D (zeta) conformation "forbidden" or filtered. T0547 172 :ERF 1z5zA 769 :KEL T0547 177 :K 1z5zA 774 :E T0547 179 :NI 1z5zA 776 :PF Number of specific fragments extracted= 3 number of extra gaps= 2 total=33629 # 1vdkA.172.251 read from T0547.t2k.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)P176 (1vdkA)L256 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1vdkA)R259 because Y (epsilon') conformation "forbidden" or filtered. T0547 172 :ERFK 1vdkA 252 :EETG T0547 177 :KP 1vdkA 257 :PF T0547 180 :I 1vdkA 260 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=33632 # 1o0sA.172.164 read from T0547.t2k.many.frag # found chain 1o0sA in template set T0547 172 :ERFKPKPNI 1o0sA 165 :NWHEEDVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33633 # 1n8kA.172.255 read from T0547.t2k.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)F174 (1n8kA)S258 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1n8kA)G260 because T (delta_L) conformation "forbidden" or filtered. T0547 172 :ER 1n8kA 256 :EM T0547 175 :K 1n8kA 259 :N T0547 177 :KPNI 1n8kA 261 :GVDF Number of specific fragments extracted= 3 number of extra gaps= 2 total=33636 # 1sr9A.172.204 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)K175 (1sr9A)G208 because T (delta_L) conformation "forbidden" or filtered. T0547 172 :ERF 1sr9A 205 :KYP T0547 176 :PKPNI 1sr9A 209 :TQWRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=33638 # 1m55A.172.68 read from T0547.t2k.many.frag # found chain 1m55A in training set Warning: unaligning (T0547)K175 (1m55A)K72 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1m55A)Q73 because Y (epsilon') conformation "forbidden" or filtered. T0547 172 :ERF 1m55A 69 :KFS T0547 177 :KPNI 1m55A 74 :ESKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=33640 # 1pdo.172.21 read from T0547.t2k.many.frag # found chain 1pdo in training set Warning: unaligning (T0547)P178 (1pdo)E29 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFKPK 1pdo 23 :MLLGEQ T0547 179 :NI 1pdo 30 :NV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33642 # 1r5yA.172.90 read from T0547.t2k.many.frag # found chain 1r5yA in training set Warning: unaligning (T0547)P176 (1r5yA)W95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1r5yA)D96 because G (3-10) conformation "forbidden" or filtered. T0547 172 :ERFK 1r5yA 91 :SFMG T0547 178 :PNI 1r5yA 97 :RPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33644 # 1kqpA.172.66 read from T0547.t2k.many.frag # found chain 1kqpA in training set Warning: unaligning (T0547)P176 (1kqpA)D71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1kqpA)Q73 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFK 1kqpA 67 :EEGG T0547 177 :K 1kqpA 72 :A T0547 179 :NI 1kqpA 74 :FI Number of specific fragments extracted= 3 number of extra gaps= 2 total=33647 # 1y7tA.172.27 read from T0547.t2k.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)K175 (1y7tA)G30 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1y7tA)Q33 because D (zeta) conformation "forbidden" or filtered. T0547 172 :ERF 1y7tA 27 :EML T0547 176 :PK 1y7tA 31 :KD T0547 179 :NI 1y7tA 34 :PV Number of specific fragments extracted= 3 number of extra gaps= 2 total=33650 # 2calA.172.30 read from T0547.t2k.many.frag # found chain 2calA in training set Warning: unaligning (T0547)K175 (2calA)G1035 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2calA)V1038 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERF 2calA 1032 :TYS T0547 176 :PK 2calA 1036 :KT T0547 179 :NI 2calA 1039 :HV Number of specific fragments extracted= 3 number of extra gaps= 2 total=33653 2fa8A expands to /projects/compbio/data/pdb/2fa8.pdb.gz 2fa8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 544, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 546, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 548, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 550, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 552, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 554, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 556, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 558, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 560, because occupancy 0.500 <= existing 0.500 in 2fa8A # 2fa8A.172.1 read from T0547.t2k.many.frag # adding 2fa8A to template set # found chain 2fa8A in template set Warning: unaligning (T0547)P176 because first residue in template chain is (2fa8A)T4 T0547 177 :KPNI 2fa8A 5 :KPRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33654 # 2aqjA.172.25 read from T0547.t2k.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2aqjA)Q31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFK 2aqjA 26 :RALQ T0547 179 :NI 2aqjA 33 :NI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33656 1pgjA expands to /projects/compbio/data/pdb/1pgj.pdb.gz 1pgjA:# 1pgjA.172.63 read from T0547.t2k.many.frag # adding 1pgjA to template set # found chain 1pgjA in template set Warning: unaligning (T0547)K177 (1pgjA)P69 because C (cis) conformation "forbidden" or filtered. T0547 172 :ERFKP 1pgjA 64 :ASLKK T0547 178 :PNI 1pgjA 70 :RKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33658 # 1tr9A.172.51 read from T0547.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)K177 (1tr9A)P56 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1tr9A)I57 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFKP 1tr9A 51 :QAAKR T0547 179 :NI 1tr9A 58 :LI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33660 # 2aebA.172.218 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P176 (2aebA)K223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. T0547 172 :ERFK 2aebA 219 :LLGR T0547 177 :K 2aebA 224 :K T0547 179 :NI 2aebA 226 :PI Number of specific fragments extracted= 3 number of extra gaps= 2 total=33663 # 1vkhA.172.70 read from T0547.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)P176 (1vkhA)E63 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1vkhA)S64 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1vkhA)T65 because G (3-10) conformation "forbidden" or filtered. T0547 172 :ERFK 1vkhA 59 :SMDT T0547 179 :NI 1vkhA 66 :VC Number of specific fragments extracted= 2 number of extra gaps= 1 total=33665 # 1ob8A.172.75 read from T0547.t2k.many.frag # found chain 1ob8A in training set Warning: unaligning (T0547)P176 (1ob8A)M80 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFK 1ob8A 76 :SMFT T0547 177 :KPNI 1ob8A 81 :KGVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33667 # 1wehA.172.122 read from T0547.t2k.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)F174 (1wehA)R125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1wehA)V127 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1wehA)R129 because Y (epsilon') conformation "forbidden" or filtered. T0547 172 :ER 1wehA 123 :LR T0547 175 :K 1wehA 126 :G T0547 177 :K 1wehA 128 :G T0547 179 :NI 1wehA 130 :PL Number of specific fragments extracted= 4 number of extra gaps= 3 total=33671 # 1jl1A.173.57 read from T0547.t2k.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)P176 (1jl1A)E61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1jl1A)A63 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1jl1A)I66 because D (zeta) conformation "forbidden" or filtered. T0547 173 :RFK 1jl1A 58 :ALK T0547 177 :K 1jl1A 62 :H T0547 179 :NI 1jl1A 64 :EV Number of specific fragments extracted= 3 number of extra gaps= 3 total=33674 # 1bli.173.250 read from T0547.t2k.many.frag # found chain 1bli in template set Warning: unaligning (T0547)K175 (1bli)G253 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1bli)M256 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1bli)F257 because P (beta_P) conformation "forbidden" or filtered. T0547 173 :RF 1bli 251 :KT T0547 176 :PK 1bli 254 :KE T0547 180 :IG 1bli 258 :TV Number of specific fragments extracted= 3 number of extra gaps= 2 total=33677 # 1w8sA.173.67 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P176 (1w8sA)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1w8sA)V73 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFK 1w8sA 68 :YYD T0547 177 :K 1w8sA 72 :S T0547 179 :NIG 1w8sA 74 :PLI Number of specific fragments extracted= 3 number of extra gaps= 2 total=33680 # 1kyqA.173.129 read from T0547.t2k.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)K175 (1kyqA)G132 because S (epsilon) conformation "forbidden" or filtered. T0547 173 :RF 1kyqA 130 :RF T0547 176 :PKPNIG 1kyqA 133 :KQQLVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=33682 # 1i24A.173.73 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)K175 (1i24A)G66 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1i24A)E70 because P (beta_P) conformation "forbidden" or filtered. T0547 173 :RF 1i24A 64 :LT T0547 176 :PKP 1i24A 67 :KSI T0547 180 :IG 1i24A 71 :LY Number of specific fragments extracted= 3 number of extra gaps= 2 total=33685 # 1qhxA.173.25 read from T0547.t2k.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)P178 (1qhxA)W31 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFKPK 1qhxA 26 :VLPEP T0547 179 :NIG 1qhxA 32 :LAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=33687 # 2fa8A.173.2 read from T0547.t2k.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)P176 because first residue in template chain is (2fa8A)T4 T0547 177 :KPNIG 2fa8A 5 :KPRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33688 # 2aebA.173.219 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)R173 (2aebA)L220 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (2aebA)K223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. T0547 174 :FK 2aebA 221 :GR T0547 177 :K 2aebA 224 :K T0547 179 :NIG 2aebA 226 :PIH Number of specific fragments extracted= 3 number of extra gaps= 3 total=33691 # 2aqjA.173.26 read from T0547.t2k.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2aqjA)Q31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFK 2aqjA 27 :ALQ T0547 179 :NIG 2aqjA 33 :NIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=33693 # 2calA.173.31 read from T0547.t2k.many.frag # found chain 2calA in training set Warning: unaligning (T0547)F174 (2calA)S1034 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (2calA)G1035 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2calA)T1037 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2calA)V1038 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (2calA)V1041 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :R 2calA 1033 :Y T0547 176 :P 2calA 1036 :K T0547 179 :NI 2calA 1039 :HV Number of specific fragments extracted= 3 number of extra gaps= 3 total=33696 # 1cvrA.173.64 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)R173 (1cvrA)K65 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1cvrA)N68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1cvrA)D69 because G (3-10) conformation "forbidden" or filtered. T0547 174 :FK 1cvrA 66 :EG T0547 178 :PNIG 1cvrA 70 :LTYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=33698 # 1vh4A.173.337 read from T0547.t2k.many.frag # found chain 1vh4A in training set Warning: unaligning (T0547)F174 (1vh4A)M337 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1vh4A)G338 because Y (epsilon') conformation "forbidden" or filtered. T0547 173 :R 1vh4A 336 :L T0547 176 :PKPNIG 1vh4A 339 :KLAEVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=33700 # 1nu0A.173.85 read from T0547.t2k.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)P178 (1nu0A)V91 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFKPK 1nu0A 86 :RFGVE T0547 179 :NIG 1nu0A 92 :KLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=33702 # 1n8kA.173.256 read from T0547.t2k.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)P176 (1n8kA)G260 because T (delta_L) conformation "forbidden" or filtered. T0547 173 :RFK 1n8kA 257 :MSN T0547 177 :KPNIG 1n8kA 261 :GVDFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=33704 # 1y7tA.173.28 read from T0547.t2k.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)K175 (1y7tA)G30 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1y7tA)Q33 because D (zeta) conformation "forbidden" or filtered. T0547 173 :RF 1y7tA 28 :ML T0547 176 :PK 1y7tA 31 :KD T0547 179 :NIG 1y7tA 34 :PVI Number of specific fragments extracted= 3 number of extra gaps= 2 total=33707 # 1ob8A.173.76 read from T0547.t2k.many.frag # found chain 1ob8A in training set Warning: unaligning (T0547)P176 (1ob8A)M80 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFK 1ob8A 77 :MFT T0547 177 :KPNIG 1ob8A 81 :KGVPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33709 1ybdA expands to /projects/compbio/data/pdb/1ybd.pdb.gz 1ybdA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ybdA.173.94 read from T0547.t2k.many.frag # adding 1ybdA to template set # found chain 1ybdA in template set Warning: unaligning (T0547)K175 (1ybdA)G99 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1ybdA)I100 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1ybdA)A102 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RF 1ybdA 97 :TL T0547 177 :K 1ybdA 101 :K T0547 179 :NIG 1ybdA 103 :RVQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=33712 # 1sr9A.173.205 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)K175 (1sr9A)G208 because T (delta_L) conformation "forbidden" or filtered. T0547 173 :RF 1sr9A 206 :YP T0547 176 :PKPNIG 1sr9A 209 :TQWRFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33714 # 1o0sA.173.165 read from T0547.t2k.many.frag # found chain 1o0sA in template set T0547 173 :RFKPKPNIG 1o0sA 166 :WHEEDVRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33715 # 1ok7A.173.80 read from T0547.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0547)K177 (1ok7A)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 173 :RFKP 1ok7A 81 :GLPE T0547 178 :PNIG 1ok7A 86 :AEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33717 # 1r2qA.173.106 read from T0547.t2k.many.frag # found chain 1r2qA in training set Warning: unaligning (T0547)N179 (1r2qA)V127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1r2qA)A129 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFKPKP 1r2qA 121 :QASPNI T0547 180 :I 1r2qA 128 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=33719 # 1qo0D.173.47 read from T0547.t2k.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)K175 (1qo0D)D50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1qo0D)V51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1qo0D)V53 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RF 1qo0D 48 :AF T0547 177 :K 1qo0D 52 :P T0547 179 :NIG 1qo0D 54 :DVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=33722 # 1nnfA.173.22 read from T0547.t2k.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)K175 (1nnfA)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nnfA)V28 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1nnfA)T29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1nnfA)N31 because D (zeta) conformation "forbidden" or filtered. T0547 173 :RF 1nnfA 23 :ET T0547 176 :PK 1nnfA 26 :IK T0547 180 :I 1nnfA 30 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=33725 # 1m55A.173.69 read from T0547.t2k.many.frag # found chain 1m55A in training set Warning: unaligning (T0547)P176 (1m55A)Q73 because Y (epsilon') conformation "forbidden" or filtered. T0547 173 :RFK 1m55A 70 :FSK T0547 177 :KPNIG 1m55A 74 :ESKFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=33727 # 1odzA.173.160 read from T0547.t2k.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)G181 (1odzA)I206 because N (gamma') conformation "forbidden" or filtered. T0547 173 :RFKPKPNI 1odzA 198 :EQGRLIPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=33728 # 1kqpA.173.67 read from T0547.t2k.many.frag # found chain 1kqpA in training set Warning: unaligning (T0547)P176 (1kqpA)D71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1kqpA)A72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1kqpA)Q73 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1kqpA)F74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1kqpA)A76 because P (beta_P) conformation "forbidden" or filtered. T0547 173 :RFK 1kqpA 68 :EGG T0547 180 :I 1kqpA 75 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=33730 # 1vkhA.173.71 read from T0547.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)P176 (1vkhA)E63 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1vkhA)T65 because G (3-10) conformation "forbidden" or filtered. T0547 173 :RFK 1vkhA 60 :MDT T0547 177 :K 1vkhA 64 :S T0547 179 :NIG 1vkhA 66 :VCQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=33733 # 1mw9X.173.19 read from T0547.t2k.many.frag # found chain 1mw9X in training set Warning: unaligning (T0547)P178 (1mw9X)Y25 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFKPK 1mw9X 20 :YLGSD T0547 179 :NIG 1mw9X 26 :VVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=33735 # 1z7aA.173.154 read from T0547.t2k.many.frag # found chain 1z7aA in training set Warning: unaligning (T0547)F174 (1z7aA)T156 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1z7aA)G157 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z7aA)Q158 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :R 1z7aA 155 :L T0547 177 :KPNIG 1z7aA 159 :RPVGW Number of specific fragments extracted= 2 number of extra gaps= 1 total=33737 1crzA expands to /projects/compbio/data/pdb/1crz.pdb.gz 1crzA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1crzA.173.65 read from T0547.t2k.many.frag # adding 1crzA to template set # found chain 1crzA in template set Warning: unaligning (T0547)K175 (1crzA)G74 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1crzA)I75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1crzA)A77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1crzA)V80 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RF 1crzA 72 :AL T0547 177 :K 1crzA 76 :D T0547 179 :NI 1crzA 78 :VV Number of specific fragments extracted= 3 number of extra gaps= 3 total=33740 # 1jl1A.174.58 read from T0547.t2k.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)P176 (1jl1A)E61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1jl1A)H62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1jl1A)A63 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1jl1A)I66 because D (zeta) conformation "forbidden" or filtered. T0547 174 :FK 1jl1A 59 :LK T0547 179 :NI 1jl1A 64 :EV T0547 182 :L 1jl1A 67 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=33743 # 1w8sA.174.68 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)K175 (1w8sA)D70 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1w8sA)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1w8sA)V73 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1w8sA)P74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1w8sA)I76 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :F 1w8sA 69 :Y T0547 177 :K 1w8sA 72 :S T0547 180 :I 1w8sA 75 :L T0547 182 :L 1w8sA 77 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=33747 # 1ok7A.174.81 read from T0547.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0547)G181 (1ok7A)A89 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FKPKPNI 1ok7A 82 :LPEGAEI T0547 182 :L 1ok7A 90 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=33749 # 2fa8A.174.3 read from T0547.t2k.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)P176 because first residue in template chain is (2fa8A)T4 T0547 177 :KPNIGL 2fa8A 5 :KPRIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33750 # 2b8nA.174.122 read from T0547.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K175 (2b8nA)N112 because P (beta_P) conformation "forbidden" or filtered. T0547 174 :F 2b8nA 111 :L T0547 176 :PKPNIGL 2b8nA 113 :ENDTVLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=33752 # 2aqjA.174.27 read from T0547.t2k.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2aqjA)Q31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FK 2aqjA 28 :LQ T0547 179 :NIGL 2aqjA 33 :NITL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33754 # 1y7tA.174.29 read from T0547.t2k.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)P178 (1y7tA)Q33 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1y7tA)I36 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FKPK 1y7tA 29 :LGKD T0547 179 :NI 1y7tA 34 :PV T0547 182 :L 1y7tA 37 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=33757 # 1bli.174.251 read from T0547.t2k.many.frag # found chain 1bli in template set Warning: unaligning (T0547)K175 (1bli)G253 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1bli)M256 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1bli)F257 because P (beta_P) conformation "forbidden" or filtered. T0547 174 :F 1bli 252 :T T0547 176 :PK 1bli 254 :KE T0547 180 :IGL 1bli 258 :TVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=33760 # 2aebA.174.220 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P176 (2aebA)K223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. T0547 174 :FK 2aebA 221 :GR T0547 177 :K 2aebA 224 :K T0547 179 :NIGL 2aebA 226 :PIHL Number of specific fragments extracted= 3 number of extra gaps= 2 total=33763 # 1cvrA.174.65 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)K175 (1cvrA)G67 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1cvrA)N68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1cvrA)T71 because G (3-10) conformation "forbidden" or filtered. T0547 174 :F 1cvrA 66 :E T0547 177 :KP 1cvrA 69 :DL T0547 180 :IGL 1cvrA 72 :YVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=33766 # 1r2qA.174.107 read from T0547.t2k.many.frag # found chain 1r2qA in training set Warning: unaligning (T0547)G181 (1r2qA)A129 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FKPKPNI 1r2qA 122 :ASPNIVI T0547 182 :L 1r2qA 130 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=33768 # 1o7jA.174.0 read from T0547.t2k.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)P176 because first residue in template chain is (1o7jA)K3 Warning: unaligning (T0547)G181 (1o7jA)V8 because P (beta_P) conformation "forbidden" or filtered. T0547 177 :KPNI 1o7jA 4 :LPNI T0547 182 :L 1o7jA 9 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=33770 # 1qj4A.174.67 read from T0547.t2k.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)K175 (1qj4A)P69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1qj4A)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1qj4A)I75 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :F 1qj4A 68 :L T0547 176 :P 1qj4A 70 :P T0547 178 :PNI 1qj4A 72 :EKV T0547 182 :L 1qj4A 76 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=33774 # 1odzA.174.161 read from T0547.t2k.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)G181 (1odzA)I206 because N (gamma') conformation "forbidden" or filtered. T0547 174 :FKPKPNI 1odzA 199 :QGRLIPV T0547 182 :L 1odzA 207 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=33776 # 1vliA.174.182 read from T0547.t2k.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)K175 (1vliA)G172 because T (delta_L) conformation "forbidden" or filtered. T0547 174 :F 1vliA 171 :E T0547 176 :PKPNIGL 1vliA 173 :NNQIAIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=33778 # 1y93A.174.48 read from T0547.t2k.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)K175 (1y93A)T154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1y93A)L160 because P (beta_P) conformation "forbidden" or filtered. T0547 174 :F 1y93A 153 :N T0547 176 :PKPNI 1y93A 155 :GMADI T0547 182 :L 1y93A 161 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=33781 # 1qo0D.174.48 read from T0547.t2k.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)K175 (1qo0D)D50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1qo0D)V51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1qo0D)V53 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :F 1qo0D 49 :F T0547 177 :K 1qo0D 52 :P T0547 179 :NIGL 1qo0D 54 :DVVF Number of specific fragments extracted= 3 number of extra gaps= 2 total=33784 # 1xbiA.174.89 read from T0547.t2k.many.frag # found chain 1xbiA in training set Warning: unaligning (T0547)P176 (1xbiA)V89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1xbiA)A91 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FK 1xbiA 87 :LE T0547 177 :K 1xbiA 90 :A T0547 179 :NIGL 1xbiA 92 :SSVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=33787 # 1zx0A.174.124 read from T0547.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)P176 (1zx0A)G127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1zx0A)F129 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1zx0A)I132 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FK 1zx0A 125 :PD T0547 177 :K 1zx0A 128 :H T0547 179 :NI 1zx0A 130 :DG T0547 182 :L 1zx0A 133 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=33791 # 1vh4A.174.338 read from T0547.t2k.many.frag # found chain 1vh4A in training set Warning: unaligning (T0547)K175 (1vh4A)G338 because Y (epsilon') conformation "forbidden" or filtered. T0547 174 :F 1vh4A 337 :M T0547 176 :PKPNIGL 1vh4A 339 :KLAEVDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=33793 # 1o0sA.174.166 read from T0547.t2k.many.frag # found chain 1o0sA in template set T0547 174 :FKPKPNIGL 1o0sA 167 :HEEDVRAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33794 # 1o2dA.174.136 read from T0547.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0547)P176 (1o2dA)H127 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FK 1o2dA 125 :VK T0547 177 :KPNIGL 1o2dA 128 :WLPVVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33796 # 1n8kA.174.257 read from T0547.t2k.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)F174 (1n8kA)S258 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1n8kA)N259 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1n8kA)G260 because T (delta_L) conformation "forbidden" or filtered. T0547 177 :KPNIGL 1n8kA 261 :GVDFSF Number of specific fragments extracted= 1 number of extra gaps= 1 total=33797 # 1qhxA.174.26 read from T0547.t2k.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)P178 (1qhxA)W31 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1qhxA)L32 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L182 (1qhxA)G35 because Y (epsilon') conformation "forbidden" or filtered. T0547 174 :FKPK 1qhxA 27 :LPEP T0547 180 :IG 1qhxA 33 :AF Number of specific fragments extracted= 2 number of extra gaps= 2 total=33799 # 1lu4A.174.21 read from T0547.t2k.many.frag # found chain 1lu4A in training set Warning: unaligning (T0547)P176 (1lu4A)G1024 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1lu4A)A1027 because Y (epsilon') conformation "forbidden" or filtered. T0547 174 :FK 1lu4A 1022 :LQ T0547 177 :KP 1lu4A 1025 :KP T0547 180 :IGL 1lu4A 1028 :VLW Number of specific fragments extracted= 3 number of extra gaps= 2 total=33802 # 1ob8A.174.77 read from T0547.t2k.many.frag # found chain 1ob8A in training set Warning: unaligning (T0547)P176 (1ob8A)M80 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FK 1ob8A 78 :FT T0547 177 :KPNIGL 1ob8A 81 :KGVPLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33804 # 1i24A.174.74 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)K175 (1i24A)G66 because T (delta_L) conformation "forbidden" or filtered. T0547 174 :F 1i24A 65 :T T0547 176 :PKPNIGL 1i24A 67 :KSIELYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33806 # 2calA.174.32 read from T0547.t2k.many.frag # found chain 2calA in training set Warning: unaligning (T0547)P178 (2calA)V1038 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FKPK 2calA 1034 :SGKT T0547 179 :NIGL 2calA 1039 :HVVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33808 # 1lc5A.174.142 read from T0547.t2k.many.frag # found chain 1lc5A in training set T0547 174 :FKPKPNIGL 1lc5A 143 :LTPDLDCLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33809 # 1gnuA.174.24 read from T0547.t2k.many.frag # found chain 1gnuA in training set Warning: unaligning (T0547)P176 (1gnuA)D27 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1gnuA)V29 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FK 1gnuA 25 :YP T0547 177 :K 1gnuA 28 :R T0547 179 :NIGL 1gnuA 30 :PVIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=33812 # 2aqjA.175.28 read from T0547.t2k.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2aqjA)Q31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :K 2aqjA 29 :Q T0547 179 :NIGLR 2aqjA 33 :NITLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33814 # 1w8sA.175.69 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P176 (1w8sA)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1w8sA)V73 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :K 1w8sA 70 :D T0547 177 :K 1w8sA 72 :S T0547 179 :NIGLR 1w8sA 74 :PLILK Number of specific fragments extracted= 3 number of extra gaps= 2 total=33817 # 2fa8A.175.4 read from T0547.t2k.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)P176 because first residue in template chain is (2fa8A)T4 Warning: unaligning (T0547)L182 (2fa8A)I10 because D (zeta) conformation "forbidden" or filtered. T0547 177 :KPNIG 2fa8A 5 :KPRIA T0547 183 :R 2fa8A 11 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=33819 # 1qo0D.175.49 read from T0547.t2k.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)P176 (1qo0D)V51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1qo0D)V53 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1qo0D)T58 because Y (epsilon') conformation "forbidden" or filtered. T0547 175 :K 1qo0D 50 :D T0547 177 :K 1qo0D 52 :P T0547 179 :NIGL 1qo0D 54 :DVVF Number of specific fragments extracted= 3 number of extra gaps= 3 total=33822 # 1jl1A.175.59 read from T0547.t2k.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)P176 (1jl1A)E61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1jl1A)A63 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :K 1jl1A 60 :K T0547 177 :K 1jl1A 62 :H T0547 179 :NIGLR 1jl1A 64 :EVILS Number of specific fragments extracted= 3 number of extra gaps= 2 total=33825 # 1qj4A.175.68 read from T0547.t2k.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)K177 (1qj4A)G71 because T (delta_L) conformation "forbidden" or filtered. T0547 175 :KP 1qj4A 69 :PP T0547 178 :PNIGLR 1qj4A 72 :EKVILV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33827 # 1o7jA.175.1 read from T0547.t2k.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)P176 because first residue in template chain is (1o7jA)K3 T0547 177 :KPNIGLR 1o7jA 4 :LPNIVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33828 # 2aebA.175.221 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P176 (2aebA)K223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (2aebA)P226 because P (beta_P) conformation "forbidden" or filtered. T0547 175 :K 2aebA 222 :R T0547 177 :K 2aebA 224 :K T0547 180 :IGLR 2aebA 227 :IHLS Number of specific fragments extracted= 3 number of extra gaps= 2 total=33831 # 1y7tA.175.30 read from T0547.t2k.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)K175 (1y7tA)G30 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1y7tA)Q33 because D (zeta) conformation "forbidden" or filtered. T0547 176 :PK 1y7tA 31 :KD T0547 179 :NIGLR 1y7tA 34 :PVILQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=33833 1pv1A expands to /projects/compbio/data/pdb/1pv1.pdb.gz 1pv1A:# 1pv1A.175.227 read from T0547.t2k.many.frag # adding 1pv1A to template set # found chain 1pv1A in template set Warning: unaligning (T0547)P176 (1pv1A)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1pv1A)L234 because P (beta_P) conformation "forbidden" or filtered. T0547 175 :K 1pv1A 228 :V T0547 177 :KPNI 1pv1A 230 :DDRI T0547 182 :LR 1pv1A 235 :IH Number of specific fragments extracted= 3 number of extra gaps= 2 total=33836 # 1t0tV.175.64 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)P176 (1t0tV)Q66 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1t0tV)A68 because Y (epsilon') conformation "forbidden" or filtered. T0547 175 :K 1t0tV 65 :G T0547 177 :K 1t0tV 67 :K T0547 179 :NIGLR 1t0tV 69 :DILFM Number of specific fragments extracted= 3 number of extra gaps= 2 total=33839 # 1r2qA.175.108 read from T0547.t2k.many.frag # found chain 1r2qA in training set T0547 175 :KPKPNIGLR 1r2qA 123 :SPNIVIALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33840 # 1lc5A.175.143 read from T0547.t2k.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)G181 (1lc5A)L150 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :KPKPNI 1lc5A 144 :TPDLDC T0547 182 :LR 1lc5A 151 :FL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33842 # 1odzA.175.162 read from T0547.t2k.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)G181 (1odzA)I206 because N (gamma') conformation "forbidden" or filtered. T0547 175 :KPKPNI 1odzA 200 :GRLIPV T0547 182 :LR 1odzA 207 :FR Number of specific fragments extracted= 2 number of extra gaps= 1 total=33844 # 1o2dA.175.137 read from T0547.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0547)P176 (1o2dA)H127 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1o2dA)W128 because Y (epsilon') conformation "forbidden" or filtered. T0547 175 :K 1o2dA 126 :K T0547 178 :PNIGLR 1o2dA 129 :LPVVEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33846 # 1lu4A.175.22 read from T0547.t2k.many.frag # found chain 1lu4A in training set Warning: unaligning (T0547)P176 (1lu4A)G1024 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1lu4A)L1029 because P (beta_P) conformation "forbidden" or filtered. T0547 175 :K 1lu4A 1023 :Q T0547 177 :KPNI 1lu4A 1025 :KPAV T0547 182 :LR 1lu4A 1030 :WF Number of specific fragments extracted= 3 number of extra gaps= 2 total=33849 1q77A expands to /projects/compbio/data/pdb/1q77.pdb.gz 1q77A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1q77A.175.0 read from T0547.t2k.many.frag # adding 1q77A to template set # found chain 1q77A in template set Warning: unaligning (T0547)K175 because first residue in template chain is (1q77A)S-2 Warning: unaligning (T0547)P176 (1q77A)N-1 because G (3-10) conformation "forbidden" or filtered. T0547 177 :KPNIGLR 1q77A 0 :AMKVLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33850 # 2b8nA.175.123 read from T0547.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K177 (2b8nA)N114 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (2b8nA)L118 because N (gamma') conformation "forbidden" or filtered. T0547 175 :KP 2b8nA 112 :NE T0547 178 :PNI 2b8nA 115 :DTV T0547 182 :LR 2b8nA 119 :FL Number of specific fragments extracted= 3 number of extra gaps= 2 total=33853 # 1vliA.175.183 read from T0547.t2k.many.frag # found chain 1vliA in template set T0547 175 :KPKPNIGLR 1vliA 172 :GNNQIAIMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33854 # 1xbiA.175.90 read from T0547.t2k.many.frag # found chain 1xbiA in training set Warning: unaligning (T0547)P176 (1xbiA)V89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1xbiA)A91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1xbiA)V94 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :K 1xbiA 88 :E T0547 177 :K 1xbiA 90 :A T0547 179 :NI 1xbiA 92 :SS T0547 182 :LR 1xbiA 95 :AI Number of specific fragments extracted= 4 number of extra gaps= 3 total=33858 # 1bli.175.252 read from T0547.t2k.many.frag # found chain 1bli in template set Warning: unaligning (T0547)K175 (1bli)G253 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1bli)M256 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1bli)F257 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1bli)V259 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PK 1bli 254 :KE T0547 180 :I 1bli 258 :T T0547 182 :LR 1bli 260 :AE Number of specific fragments extracted= 3 number of extra gaps= 3 total=33861 # 1eexB.175.57 read from T0547.t2k.many.frag # found chain 1eexB in training set Warning: unaligning (T0547)P176 (1eexB)Q59 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1eexB)D61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1eexB)I64 because P (beta_P) conformation "forbidden" or filtered. T0547 175 :K 1eexB 58 :T T0547 177 :K 1eexB 60 :Q T0547 179 :NI 1eexB 62 :EV T0547 182 :LR 1eexB 65 :IA Number of specific fragments extracted= 4 number of extra gaps= 3 total=33865 # 1cvrA.175.66 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)K175 (1cvrA)G67 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1cvrA)N68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1cvrA)D69 because G (3-10) conformation "forbidden" or filtered. T0547 178 :PNIGLR 1cvrA 70 :LTYVLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33866 2d0oA expands to /projects/compbio/data/pdb/2d0o.pdb.gz 2d0oA:# 2d0oA.175.125 read from T0547.t2k.many.frag # adding 2d0oA to template set # found chain 2d0oA in template set Warning: unaligning (T0547)K175 (2d0oA)P126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (2d0oA)A127 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2d0oA)A129 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :K 2d0oA 128 :D T0547 179 :NIGLR 2d0oA 130 :PYILV Number of specific fragments extracted= 2 number of extra gaps= 2 total=33868 # 1pswA.175.177 read from T0547.t2k.many.frag # found chain 1pswA in template set Warning: unaligning (T0547)K175 (1pswA)S178 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1pswA)R180 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :P 1pswA 179 :E T0547 178 :PNIGLR 1pswA 181 :PMIGFC Number of specific fragments extracted= 2 number of extra gaps= 2 total=33870 # 1r6xA.175.95 read from T0547.t2k.many.frag # found chain 1r6xA in training set Warning: unaligning (T0547)G181 (1r6xA)A103 because P (beta_P) conformation "forbidden" or filtered. T0547 175 :KPKPNI 1r6xA 97 :KPDTRI T0547 182 :LR 1r6xA 104 :LF Number of specific fragments extracted= 2 number of extra gaps= 1 total=33872 # 1no5A.175.41 read from T0547.t2k.many.frag # found chain 1no5A in training set T0547 175 :KPKPNIGLR 1no5A 42 :KKYSDLDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33873 # 1ok7A.175.82 read from T0547.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0547)K177 (1ok7A)G85 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1ok7A)A89 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :KP 1ok7A 83 :PE T0547 178 :PNI 1ok7A 86 :AEI T0547 182 :LR 1ok7A 90 :VQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=33876 1bouB expands to /projects/compbio/data/pdb/1bou.pdb.gz 1bouB:# 1bouB.175.47 read from T0547.t2k.many.frag # adding 1bouB to template set # found chain 1bouB in template set Warning: unaligning (T0547)P176 (1bouB)N49 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1bouB)V54 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :K 1bouB 48 :G T0547 177 :KPNI 1bouB 50 :MPDV T0547 182 :LR 1bouB 55 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=33879 # 1n8kA.175.258 read from T0547.t2k.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)K175 (1n8kA)N259 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1n8kA)G260 because T (delta_L) conformation "forbidden" or filtered. T0547 177 :KPNIGLR 1n8kA 261 :GVDFSFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=33880 # 1w8sA.176.70 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P176 (1w8sA)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1w8sA)V73 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :K 1w8sA 72 :S T0547 179 :NIGLRV 1w8sA 74 :PLILKL Number of specific fragments extracted= 2 number of extra gaps= 2 total=33882 # 2fa8A.176.5 read from T0547.t2k.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)P176 because first residue in template chain is (2fa8A)T4 Warning: unaligning (T0547)K177 (2fa8A)K5 because P (beta_P) conformation "forbidden" or filtered. T0547 178 :PNIGLRV 2fa8A 6 :PRIAIRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33883 # 1qo0D.176.50 read from T0547.t2k.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)P176 (1qo0D)V51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1qo0D)V53 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1qo0D)T58 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :K 1qo0D 52 :P T0547 179 :NIGL 1qo0D 54 :DVVF T0547 184 :V 1qo0D 59 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=33886 # 2aqjA.176.29 read from T0547.t2k.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2aqjA)Q31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRV 2aqjA 33 :NITLIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=33887 # 1sfsA.176.50 read from T0547.t2k.many.frag # found chain 1sfsA in training set Warning: unaligning (T0547)P176 (1sfsA)G27 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :KPNIGLRV 1sfsA 28 :YPKFWGRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=33888 # 1odzA.176.163 read from T0547.t2k.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)G181 (1odzA)I206 because N (gamma') conformation "forbidden" or filtered. T0547 176 :PKPNI 1odzA 201 :RLIPV T0547 182 :LRV 1odzA 207 :FRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33890 # 1knwA.176.134 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K177 (1knwA)G136 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1knwA)R138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1knwA)R142 because P (beta_P) conformation "forbidden" or filtered. T0547 176 :P 1knwA 135 :P T0547 178 :P 1knwA 137 :H T0547 180 :IGL 1knwA 139 :VWL T0547 184 :V 1knwA 143 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=33894 # 1qj4A.176.69 read from T0547.t2k.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)K177 (1qj4A)G71 because T (delta_L) conformation "forbidden" or filtered. T0547 176 :P 1qj4A 70 :P T0547 178 :PNIGLRV 1qj4A 72 :EKVILVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=33896 # 1r2qA.176.109 read from T0547.t2k.many.frag # found chain 1r2qA in training set T0547 176 :PKPNIGLRV 1r2qA 124 :PNIVIALSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33897 # 1lc5A.176.144 read from T0547.t2k.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)G181 (1lc5A)L150 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PKPNI 1lc5A 145 :PDLDC T0547 182 :LRV 1lc5A 151 :FLC Number of specific fragments extracted= 2 number of extra gaps= 1 total=33899 # 1ogdA.176.105 read from T0547.t2k.many.frag # found chain 1ogdA in template set T0547 176 :PKPNIGLRV 1ogdA 106 :KDAKAVIRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33900 # 2aebA.176.222 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P176 (2aebA)K223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :K 2aebA 224 :K T0547 179 :NIGLRV 2aebA 226 :PIHLSF Number of specific fragments extracted= 2 number of extra gaps= 2 total=33902 # 1pv1A.176.228 read from T0547.t2k.many.frag # found chain 1pv1A in template set Warning: unaligning (T0547)N179 (1pv1A)R232 because Y (epsilon') conformation "forbidden" or filtered. T0547 176 :PKP 1pv1A 229 :GDD T0547 180 :IGLRV 1pv1A 233 :ILIHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33904 # 1o7jA.176.2 read from T0547.t2k.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)P176 because first residue in template chain is (1o7jA)K3 T0547 177 :KPNIGLRV 1o7jA 4 :LPNIVILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33905 # 1o0sA.176.168 read from T0547.t2k.many.frag # found chain 1o0sA in template set T0547 176 :PKPNIGLRV 1o0sA 169 :EDVRAIVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33906 # 1ezwA.176.1 read from T0547.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)P176 because first residue in template chain is (1ezwA)A2 Warning: unaligning (T0547)N179 (1ezwA)S5 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :KP 1ezwA 3 :EV T0547 180 :IGLRV 1ezwA 6 :FGIEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33908 # 1y7tA.176.31 read from T0547.t2k.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)P178 (1y7tA)Q33 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1y7tA)I36 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PK 1y7tA 31 :KD T0547 179 :NI 1y7tA 34 :PV T0547 182 :LRV 1y7tA 37 :LQL Number of specific fragments extracted= 3 number of extra gaps= 2 total=33911 # 1cs1A.176.135 read from T0547.t2k.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P176 (1cs1A)E136 because G (3-10) conformation "forbidden" or filtered. T0547 177 :KPNIGLRV 1cs1A 137 :KPKLVLVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=33912 # 1lu4A.176.23 read from T0547.t2k.many.frag # found chain 1lu4A in training set Warning: unaligning (T0547)P176 (1lu4A)G1024 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1lu4A)A1027 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :KP 1lu4A 1025 :KP T0547 180 :IGLRV 1lu4A 1028 :VLWFW Number of specific fragments extracted= 2 number of extra gaps= 2 total=33914 # 1q77A.176.1 read from T0547.t2k.many.frag # found chain 1q77A in template set Warning: unaligning (T0547)P176 (1q77A)N-1 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1q77A)A0 because P (beta_P) conformation "forbidden" or filtered. T0547 178 :PNIGLRV 1q77A 1 :MKVLLVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33915 # 2amlA.176.95 read from T0547.t2k.many.frag # found chain 2amlA in training set Warning: unaligning (T0547)R183 (2amlA)G91 because P (beta_P) conformation "forbidden" or filtered. T0547 176 :PKPNIGL 2amlA 84 :SHLDLVI T0547 184 :V 2amlA 92 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=33917 # 1no5A.176.42 read from T0547.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0547)G181 (1no5A)D48 because P (beta_P) conformation "forbidden" or filtered. T0547 176 :PKPNI 1no5A 43 :KYSDL T0547 182 :LRV 1no5A 49 :LAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33919 # 1kqpA.176.69 read from T0547.t2k.many.frag # found chain 1kqpA in training set Warning: unaligning (T0547)P178 (1kqpA)A72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1kqpA)I75 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PK 1kqpA 70 :GD T0547 179 :NI 1kqpA 73 :QF T0547 182 :LRV 1kqpA 76 :AVR Number of specific fragments extracted= 3 number of extra gaps= 2 total=33922 # 1xbiA.176.91 read from T0547.t2k.many.frag # found chain 1xbiA in training set Warning: unaligning (T0547)P176 (1xbiA)V89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1xbiA)A91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1xbiA)V94 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :K 1xbiA 90 :A T0547 179 :NI 1xbiA 92 :SS T0547 182 :LRV 1xbiA 95 :AII Number of specific fragments extracted= 3 number of extra gaps= 3 total=33925 # 1eexB.176.58 read from T0547.t2k.many.frag # found chain 1eexB in training set Warning: unaligning (T0547)P176 (1eexB)Q59 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1eexB)D61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1eexB)I64 because P (beta_P) conformation "forbidden" or filtered. T0547 177 :K 1eexB 60 :Q T0547 179 :NI 1eexB 62 :EV T0547 182 :LRV 1eexB 65 :IAV Number of specific fragments extracted= 3 number of extra gaps= 3 total=33928 # 1jl1A.176.60 read from T0547.t2k.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)P176 (1jl1A)E61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1jl1A)A63 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1jl1A)I66 because D (zeta) conformation "forbidden" or filtered. T0547 177 :K 1jl1A 62 :H T0547 179 :NI 1jl1A 64 :EV T0547 182 :LRV 1jl1A 67 :LST Number of specific fragments extracted= 3 number of extra gaps= 3 total=33931 # 1y93A.176.50 read from T0547.t2k.many.frag # found chain 1y93A in training set T0547 176 :PKPNIGLRV 1y93A 155 :GMADILVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33932 # 1bouB.176.48 read from T0547.t2k.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)P176 (1bouB)N49 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1bouB)V54 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1bouB 50 :MPDV T0547 182 :LRV 1bouB 55 :ILV Number of specific fragments extracted= 2 number of extra gaps= 2 total=33934 # 1o2dA.176.138 read from T0547.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0547)P176 (1o2dA)H127 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1o2dA)I134 because D (zeta) conformation "forbidden" or filtered. T0547 177 :KPNIGL 1o2dA 128 :WLPVVE T0547 184 :V 1o2dA 135 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=33936 # 1vliA.176.184 read from T0547.t2k.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)G181 (1vliA)I178 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PKPNI 1vliA 173 :NNQIA T0547 182 :LRV 1vliA 179 :MHC Number of specific fragments extracted= 2 number of extra gaps= 1 total=33938 # 1knwA.177.135 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 177 :KPNIGLRVR 1knwA 136 :GHRVWLRVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33939 # 1w8sA.177.71 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P178 (1w8sA)V73 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :K 1w8sA 72 :S T0547 179 :NIGLRVR 1w8sA 74 :PLILKLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=33941 # 2fa8A.177.6 read from T0547.t2k.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)N179 (2fa8A)R7 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KP 2fa8A 5 :KP T0547 180 :IGLRVR 2fa8A 8 :IAIRYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=33943 # 1odzA.177.164 read from T0547.t2k.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)N179 (1odzA)P204 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1odzA)Y210 because L (left) conformation "forbidden" or filtered. T0547 177 :KP 1odzA 202 :LI T0547 180 :IGLRV 1odzA 205 :VIFRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=33945 # 7odcA.177.147 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G181 (7odcA)V152 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 7odcA 148 :KAKL T0547 182 :LRVR 7odcA 153 :LRIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33947 # 1ogdA.177.106 read from T0547.t2k.many.frag # found chain 1ogdA in template set T0547 177 :KPNIGLRVR 1ogdA 107 :DAKAVIRTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33948 # 1qo0D.177.51 read from T0547.t2k.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)P178 (1qo0D)V53 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1qo0D)T58 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :K 1qo0D 52 :P T0547 179 :NIGL 1qo0D 54 :DVVF T0547 184 :VR 1qo0D 59 :SI Number of specific fragments extracted= 3 number of extra gaps= 2 total=33951 # 1r2qA.177.110 read from T0547.t2k.many.frag # found chain 1r2qA in training set Warning: unaligning (T0547)G181 (1r2qA)A129 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1r2qA 125 :NIVI T0547 182 :LRVR 1r2qA 130 :LSGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=33953 # 1sfsA.177.51 read from T0547.t2k.many.frag # found chain 1sfsA in training set Warning: unaligning (T0547)G181 (1sfsA)W32 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1sfsA 28 :YPKF T0547 182 :LRVR 1sfsA 33 :GRYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33955 # 1qj4A.177.70 read from T0547.t2k.many.frag # found chain 1qj4A in training set T0547 177 :KPNIGLRVR 1qj4A 71 :GEKVILVGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33956 # 1ezwA.177.2 read from T0547.t2k.many.frag # found chain 1ezwA in training set T0547 177 :KPNIGLRVR 1ezwA 3 :EVSFGIELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33957 # 2amlA.177.96 read from T0547.t2k.many.frag # found chain 2amlA in training set Warning: unaligning (T0547)G181 (2amlA)V89 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 2amlA 85 :HLDL T0547 182 :LRVR 2amlA 90 :IGIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=33959 # 1iuqA.177.128 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (1iuqA)N138 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (1iuqA)N138 T0547 177 :KPNIGLR 1iuqA 130 :GHNVVLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=33960 # 1pz4A.177.32 read from T0547.t2k.many.frag # found chain 1pz4A in training set Warning: unaligning (T0547)P178 (1pz4A)H28 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :K 1pz4A 27 :E T0547 179 :NIGLRVR 1pz4A 29 :VYKFRIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=33962 # 1lc5A.177.145 read from T0547.t2k.many.frag # found chain 1lc5A in training set T0547 177 :KPNIGLRVR 1lc5A 146 :DLDCLFLCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33963 # 2aqjA.177.30 read from T0547.t2k.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (2aqjA)N33 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :K 2aqjA 31 :Q T0547 180 :IGLRVR 2aqjA 34 :ITLIES Number of specific fragments extracted= 2 number of extra gaps= 1 total=33965 # 1cs1A.177.136 read from T0547.t2k.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)G181 (1cs1A)V141 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1cs1A 137 :KPKL T0547 182 :LRVR 1cs1A 142 :LVES Number of specific fragments extracted= 2 number of extra gaps= 1 total=33967 # 1ako.177.25 read from T0547.t2k.many.frag # found chain 1ako in training set Warning: unaligning (T0547)K177 (1ako)Q26 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1ako)E34 because L (left) conformation "forbidden" or filtered. T0547 178 :PNIGLRV 1ako 27 :PDVIGLQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=33968 # 2aebA.177.223 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :K 2aebA 224 :K T0547 179 :NIGLRVR 2aebA 226 :PIHLSFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=33970 # 1kqpA.177.70 read from T0547.t2k.many.frag # found chain 1kqpA in training set Warning: unaligning (T0547)P178 (1kqpA)A72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1kqpA)I75 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :K 1kqpA 71 :D T0547 179 :NI 1kqpA 73 :QF T0547 182 :LRVR 1kqpA 76 :AVRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=33973 # 1y93A.177.51 read from T0547.t2k.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)R185 (1y93A)A164 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :KPNIGLRV 1y93A 156 :MADILVVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=33974 # 1vliA.177.185 read from T0547.t2k.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)K177 (1vliA)N174 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1vliA)I178 because E (beta_S) conformation "forbidden" or filtered. T0547 178 :PNI 1vliA 175 :QIA T0547 182 :LRVR 1vliA 179 :MHCV Number of specific fragments extracted= 2 number of extra gaps= 2 total=33976 # 1pv1A.177.229 read from T0547.t2k.many.frag # found chain 1pv1A in template set Warning: unaligning (T0547)N179 (1pv1A)R232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1pv1A)L234 because P (beta_P) conformation "forbidden" or filtered. T0547 177 :KP 1pv1A 230 :DD T0547 180 :I 1pv1A 233 :I T0547 182 :LRVR 1pv1A 235 :IHVG Number of specific fragments extracted= 3 number of extra gaps= 2 total=33979 # 1o0sA.177.169 read from T0547.t2k.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)G181 (1o0sA)I174 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1o0sA 170 :DVRA T0547 182 :LRVR 1o0sA 175 :VVTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=33981 # 1ob8A.177.80 read from T0547.t2k.many.frag # found chain 1ob8A in training set T0547 177 :KPNIGLRVR 1ob8A 81 :KGVPLIAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33982 # 1rttA.177.71 read from T0547.t2k.many.frag # found chain 1rttA in training set T0547 177 :KPNIGLRVR 1rttA 72 :AADALLFAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33983 # 2f2hA.177.338 read from T0547.t2k.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)G181 (2f2hA)C343 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (2f2hA)N347 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (2f2hA)N347 T0547 177 :KPNI 2f2hA 339 :GLKI T0547 182 :LR 2f2hA 344 :VW Number of specific fragments extracted= 2 number of extra gaps= 2 total=33985 # 1no5A.177.43 read from T0547.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0547)G181 (1no5A)D48 because P (beta_P) conformation "forbidden" or filtered. T0547 177 :KPNI 1no5A 44 :YSDL T0547 182 :LRVR 1no5A 49 :LAII Number of specific fragments extracted= 2 number of extra gaps= 1 total=33987 # 1cvrA.177.68 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)G181 (1cvrA)V73 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1cvrA)G77 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :KPNI 1cvrA 69 :DLTY T0547 182 :LRV 1cvrA 74 :LLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=33989 # 1m55A.177.73 read from T0547.t2k.many.frag # found chain 1m55A in training set Warning: unaligning (T0547)G181 (1m55A)F78 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1m55A 74 :ESKF T0547 182 :LRVR 1m55A 79 :VQFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33991 # 1knwA.178.136 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)R183 (1knwA)R142 because P (beta_P) conformation "forbidden" or filtered. T0547 178 :PNIGL 1knwA 137 :HRVWL T0547 184 :VRL 1knwA 143 :VNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33993 # 7odcA.178.148 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33994 # 1w8sA.178.72 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P178 (1w8sA)V73 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 (1w8sA)G81 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NIGLRVR 1w8sA 74 :PLILKLN Number of specific fragments extracted= 1 number of extra gaps= 2 total=33995 # 1ogdA.178.107 read from T0547.t2k.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)R183 (1ogdA)R113 because P (beta_P) conformation "forbidden" or filtered. T0547 178 :PNIGL 1ogdA 108 :AKAVI T0547 184 :VRL 1ogdA 114 :TGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33997 # 2fa8A.178.7 read from T0547.t2k.many.frag # found chain 2fa8A in template set T0547 178 :PNIGLRVRL 2fa8A 6 :PRIAIRYCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33998 # 1odzA.178.165 read from T0547.t2k.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)R185 (1odzA)Y210 because L (left) conformation "forbidden" or filtered. T0547 178 :PNIGLRV 1odzA 203 :IPVIFRL T0547 186 :L 1odzA 211 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=34000 # 1rttA.178.72 read from T0547.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)I180 (1rttA)A75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1rttA)L76 because E (beta_S) conformation "forbidden" or filtered. T0547 178 :PN 1rttA 73 :AD T0547 182 :LRVRL 1rttA 77 :LFATP Number of specific fragments extracted= 2 number of extra gaps= 1 total=34002 # 1ezwA.178.3 read from T0547.t2k.many.frag # found chain 1ezwA in training set T0547 178 :PNIGLRVRL 1ezwA 4 :VSFGIELLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34003 # 1pz4A.178.33 read from T0547.t2k.many.frag # found chain 1pz4A in training set Warning: unaligning (T0547)P178 (1pz4A)H28 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1pz4A)K31 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NI 1pz4A 29 :VY T0547 182 :LRVRL 1pz4A 32 :FRITQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=34005 # 1iuqA.178.129 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)G181 (1iuqA)V134 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (1iuqA)N138 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (1iuqA)N138 T0547 178 :PNI 1iuqA 131 :HNV T0547 182 :LR 1iuqA 135 :LI T0547 186 :L 1iuqA 139 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=34008 # 1sfsA.178.52 read from T0547.t2k.many.frag # found chain 1sfsA in training set Warning: unaligning (T0547)L186 (1sfsA)S37 because Y (epsilon') conformation "forbidden" or filtered. T0547 178 :PNIGLRVR 1sfsA 29 :PKFWGRYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=34009 # 1qo0D.178.52 read from T0547.t2k.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)P178 (1qo0D)V53 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1qo0D)T58 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NIGL 1qo0D 54 :DVVF T0547 184 :VRL 1qo0D 59 :SIF Number of specific fragments extracted= 2 number of extra gaps= 2 total=34011 # 1cs1A.178.137 read from T0547.t2k.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)G181 (1cs1A)V141 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 (1cs1A)P146 because C (cis) conformation "forbidden" or filtered. T0547 178 :PNI 1cs1A 138 :PKL T0547 182 :LRVR 1cs1A 142 :LVES Number of specific fragments extracted= 2 number of extra gaps= 2 total=34013 # 1wouA.178.24 read from T0547.t2k.many.frag # found chain 1wouA in training set Warning: unaligning (T0547)P178 (1wouA)K25 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1wouA 26 :TIFAYFTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=34014 # 2f2hA.178.339 read from T0547.t2k.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)G181 (2f2hA)C343 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (2f2hA)N347 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (2f2hA)N347 T0547 178 :PNI 2f2hA 340 :LKI T0547 182 :LR 2f2hA 344 :VW T0547 186 :L 2f2hA 348 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=34017 # 2amlA.178.97 read from T0547.t2k.many.frag # found chain 2amlA in training set T0547 178 :PNIGLRVRL 2amlA 86 :LDLVIGISQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=34018 # 2aqjA.178.31 read from T0547.t2k.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 2aqjA 33 :NITLIESA Number of specific fragments extracted= 1 number of extra gaps= 1 total=34019 # 1ako.178.26 read from T0547.t2k.many.frag # found chain 1ako in training set Warning: unaligning (T0547)G181 (1ako)I30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1ako)E34 because L (left) conformation "forbidden" or filtered. T0547 178 :PNI 1ako 27 :PDV T0547 182 :LRV 1ako 31 :GLQ T0547 186 :L 1ako 35 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=34022 # 1lc5A.178.146 read from T0547.t2k.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)G181 (1lc5A)L150 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 (1lc5A)P155 because C (cis) conformation "forbidden" or filtered. T0547 178 :PNI 1lc5A 147 :LDC T0547 182 :LRVR 1lc5A 151 :FLCT Number of specific fragments extracted= 2 number of extra gaps= 2 total=34024 # 1r2qA.178.111 read from T0547.t2k.many.frag # found chain 1r2qA in training set Warning: unaligning (T0547)L186 (1r2qA)K134 because L (left) conformation "forbidden" or filtered. T0547 178 :PNIGLRVR 1r2qA 126 :IVIALSGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=34025 # 1kqpA.178.71 read from T0547.t2k.many.frag # found chain 1kqpA in training set Warning: unaligning (T0547)P178 (1kqpA)A72 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1kqpA 73 :QFIAVRLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=34026 # 1o7qA.178.138 read from T0547.t2k.many.frag # found chain 1o7qA in training set Warning: unaligning (T0547)P178 (1o7qA)V218 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1o7qA 219 :DFLFCMDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=34027 # 1pv1A.178.230 read from T0547.t2k.many.frag # found chain 1pv1A in template set Warning: unaligning (T0547)N179 (1pv1A)R232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1pv1A)L234 because P (beta_P) conformation "forbidden" or filtered. T0547 178 :P 1pv1A 231 :D T0547 180 :I 1pv1A 233 :I T0547 182 :LRVRL 1pv1A 235 :IHVGD Number of specific fragments extracted= 3 number of extra gaps= 2 total=34030 # 1vyrA.178.227 read from T0547.t2k.many.frag # found chain 1vyrA in training set Warning: unaligning (T0547)P178 (1vyrA)D228 because G (3-10) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1vyrA 229 :RIGIRVSP Number of specific fragments extracted= 1 number of extra gaps= 1 total=34031 # 2aebA.178.224 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (2aebA)P226 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (2aebA)H228 because E (beta_S) conformation "forbidden" or filtered. T0547 180 :I 2aebA 227 :I T0547 182 :LRVRL 2aebA 229 :LSFDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=34033 # 1vliA.178.186 read from T0547.t2k.many.frag # found chain 1vliA in template set T0547 178 :PNIGLRVRL 1vliA 175 :QIAIMHCVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34034 # 1k5cA.178.220 read from T0547.t2k.many.frag # found chain 1k5cA in training set Warning: unaligning (T0547)P178 (1k5cA)S221 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1k5cA 222 :MYGVRIKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=34035 # 1v72A.178.140 read from T0547.t2k.many.frag # found chain 1v72A in template set Warning: unaligning (T0547)P178 (1v72A)Q141 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1v72A)P142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1v72A)A150 T0547 180 :IGLRVR 1v72A 143 :ACVSIT Number of specific fragments extracted= 1 number of extra gaps= 2 total=34036 # 1tqjA.178.112 read from T0547.t2k.many.frag # found chain 1tqjA in training set Warning: unaligning (T0547)P178 (1tqjA)K113 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1tqjA 114 :KAGAVLNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=34037 # 1n3lA.178.35 read from T0547.t2k.many.frag # found chain 1n3lA in training set T0547 178 :PNIGLRVRL 1n3lA 36 :LKIYWGTAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34038 # 1knwA.179.137 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 179 :NIGLRVRLH 1knwA 138 :RVWLRVNPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34039 # 7odcA.179.149 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 T0547 179 :NIGLRVR 7odcA 150 :KLVLRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34040 # 1ogdA.179.108 read from T0547.t2k.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)R183 (1ogdA)R113 because P (beta_P) conformation "forbidden" or filtered. T0547 179 :NIGL 1ogdA 109 :KAVI T0547 184 :VRLH 1ogdA 114 :TGEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=34042 # 2fa8A.179.8 read from T0547.t2k.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)N179 (2fa8A)R7 because E (beta_S) conformation "forbidden" or filtered. T0547 180 :IGLRVRLH 2fa8A 8 :IAIRYCTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=34043 # 1odzA.179.166 read from T0547.t2k.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)R185 (1odzA)Y210 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1odzA)E212 because L (left) conformation "forbidden" or filtered. T0547 179 :NIGLRV 1odzA 204 :PVIFRL T0547 186 :L 1odzA 211 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=34045 # 1w8sA.179.73 read from T0547.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)L186 (1w8sA)G81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1w8sA)K82 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NIGLRVR 1w8sA 74 :PLILKLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=34046 # 1ezwA.179.4 read from T0547.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)N179 (1ezwA)S5 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :IGLRVRLH 1ezwA 6 :FGIELLPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=34047 # 1rttA.179.73 read from T0547.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)G181 (1rttA)L76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1rttA)F78 because P (beta_P) conformation "forbidden" or filtered. T0547 179 :NI 1rttA 74 :DA T0547 182 :L 1rttA 77 :L T0547 184 :VRLH 1rttA 79 :ATPE Number of specific fragments extracted= 3 number of extra gaps= 2 total=34050 # 1iuqA.179.130 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (1iuqA)N138 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (1iuqA)N138 T0547 179 :NIGLR 1iuqA 132 :NVVLI T0547 186 :LH 1iuqA 139 :HQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=34052 # 2aqjA.179.32 read from T0547.t2k.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)R185 (2aqjA)S39 because P (beta_P) conformation "forbidden" or filtered. T0547 179 :NIGLRV 2aqjA 33 :NITLIE T0547 186 :LH 2aqjA 40 :AA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34054 # 1pz4A.179.34 read from T0547.t2k.many.frag # found chain 1pz4A in training set Warning: unaligning (T0547)G181 (1pz4A)K31 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1pz4A)G37 because L (left) conformation "forbidden" or filtered. T0547 179 :NI 1pz4A 29 :VY T0547 182 :LRVRL 1pz4A 32 :FRITQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=34056 # 1kqpA.179.72 read from T0547.t2k.many.frag # found chain 1kqpA in training set Warning: unaligning (T0547)N179 (1kqpA)Q73 because E (beta_S) conformation "forbidden" or filtered. T0547 180 :IGLRVRLH 1kqpA 74 :FIAVRLPH Number of specific fragments extracted= 1 number of extra gaps= 1 total=34057 # 1vyrA.179.228 read from T0547.t2k.many.frag # found chain 1vyrA in training set Warning: unaligning (T0547)R185 (1vyrA)S235 because D (zeta) conformation "forbidden" or filtered. T0547 179 :NIGLRV 1vyrA 229 :RIGIRV T0547 186 :LH 1vyrA 236 :PI Number of specific fragments extracted= 2 number of extra gaps= 1 total=34059 # 1tqjA.179.113 read from T0547.t2k.many.frag # found chain 1tqjA in training set T0547 179 :NIGLRVRLH 1tqjA 114 :KAGAVLNPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34060 # 1sfsA.179.53 read from T0547.t2k.many.frag # found chain 1sfsA in training set T0547 179 :NIGLRVRLH 1sfsA 30 :KFWGRYLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34061 # 1qo0D.179.53 read from T0547.t2k.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)R183 (1qo0D)T58 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NIGL 1qo0D 54 :DVVF T0547 184 :VRLH 1qo0D 59 :SIFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=34063 # 1cs1A.179.138 read from T0547.t2k.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)L186 (1cs1A)P146 because C (cis) conformation "forbidden" or filtered. T0547 179 :NIGLRVR 1cs1A 139 :KLVLVES T0547 187 :H 1cs1A 147 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=34065 # 1pv1A.179.231 read from T0547.t2k.many.frag # found chain 1pv1A in template set Warning: unaligning (T0547)N179 (1pv1A)R232 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :IGLRVRLH 1pv1A 233 :ILIHVGDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=34066 # 1wouA.179.25 read from T0547.t2k.many.frag # found chain 1wouA in training set T0547 179 :NIGLRVRLH 1wouA 26 :TIFAYFTGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34067 # 2f2hA.179.340 read from T0547.t2k.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)G181 (2f2hA)C343 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (2f2hA)W345 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (2f2hA)N347 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (2f2hA)N347 T0547 179 :NI 2f2hA 341 :KI T0547 182 :L 2f2hA 344 :V T0547 186 :LH 2f2hA 348 :PY Number of specific fragments extracted= 3 number of extra gaps= 2 total=34070 # 1o7qA.179.139 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 179 :NIGLRVRLH 1o7qA 219 :DFLFCMDVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=34071 # 1lc5A.179.147 read from T0547.t2k.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)L186 (1lc5A)P155 because C (cis) conformation "forbidden" or filtered. T0547 179 :NIGLRVR 1lc5A 148 :DCLFLCT T0547 187 :H 1lc5A 156 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=34073 # 1vliA.179.187 read from T0547.t2k.many.frag # found chain 1vliA in template set T0547 179 :NIGLRVRLH 1vliA 176 :IAIMHCVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34074 # 2amlA.179.98 read from T0547.t2k.many.frag # found chain 2amlA in training set T0547 179 :NIGLRVRLH 2amlA 87 :DLVIGISQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34075 # 1ako.179.27 read from T0547.t2k.many.frag # found chain 1ako in training set Warning: unaligning (T0547)G181 (1ako)I30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1ako)E34 because L (left) conformation "forbidden" or filtered. T0547 179 :NI 1ako 28 :DV T0547 182 :LRV 1ako 31 :GLQ T0547 186 :LH 1ako 35 :TK Number of specific fragments extracted= 3 number of extra gaps= 2 total=34078 # 1n3lA.179.36 read from T0547.t2k.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)G181 (1n3lA)Y39 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NI 1n3lA 37 :KI T0547 182 :LRVRLH 1n3lA 40 :WGTATT Number of specific fragments extracted= 2 number of extra gaps= 1 total=34080 # 2aebA.179.225 read from T0547.t2k.many.frag # found chain 2aebA in training set T0547 179 :NIGLRVRLH 2aebA 226 :PIHLSFDVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=34081 1dekA expands to /projects/compbio/data/pdb/1dek.pdb.gz 1dekA:Bad short name: OD3 for alphabet: pdb_atoms Skipped atom 1140, because occupancy 0.500 <= existing 0.500 in 1dekA Skipped atom 1188, because occupancy 0.500 <= existing 0.500 in 1dekA Skipped atom 1190, because occupancy 0.500 <= existing 0.500 in 1dekA Skipped atom 1192, because occupancy 0.500 <= existing 0.500 in 1dekA Skipped atom 1194, because occupancy 0.500 <= existing 0.500 in 1dekA Skipped atom 1196, because occupancy 0.500 <= existing 0.500 in 1dekA Skipped atom 1198, because occupancy 0.500 <= existing 0.500 in 1dekA Skipped atom 1200, because occupancy 0.500 <= existing 0.500 in 1dekA Skipped atom 1345, because occupancy 0.400 <= existing 0.600 in 1dekA Skipped atom 1347, because occupancy 0.400 <= existing 0.600 in 1dekA Skipped atom 1349, because occupancy 0.400 <= existing 0.600 in 1dekA Skipped atom 1446, because occupancy 0.500 <= existing 0.500 in 1dekA Skipped atom 1448, because occupancy 0.500 <= existing 0.500 in 1dekA Skipped atom 1450, because occupancy 0.500 <= existing 0.500 in 1dekA Skipped atom 1452, because occupancy 0.500 <= existing 0.500 in 1dekA Skipped atom 1454, because occupancy 0.500 <= existing 0.500 in 1dekA Skipped atom 1456, because occupancy 0.500 <= existing 0.500 in 1dekA Skipped atom 1458, because occupancy 0.500 <= existing 0.500 in 1dekA # 1dekA.179.190 read from T0547.t2k.many.frag # adding 1dekA to template set # found chain 1dekA in template set Warning: unaligning (T0547)N179 (1dekA)T191 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1dekA)I193 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1dekA)G199 because L (left) conformation "forbidden" or filtered. T0547 180 :I 1dekA 192 :V T0547 182 :LRVRL 1dekA 194 :HVVRP Number of specific fragments extracted= 2 number of extra gaps= 3 total=34083 # 1k5cA.179.221 read from T0547.t2k.many.frag # found chain 1k5cA in training set T0547 179 :NIGLRVRLH 1k5cA 222 :MYGVRIKAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=34084 # 1vpqA.179.198 read from T0547.t2k.many.frag # found chain 1vpqA in template set T0547 179 :NIGLRVRLH 1vpqA 187 :YAYFRFHGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=34085 # 1knwA.180.138 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)R183 (1knwA)R142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1knwA)G146 because T (delta_L) conformation "forbidden" or filtered. T0547 180 :IGL 1knwA 139 :VWL T0547 184 :VRL 1knwA 143 :VNP T0547 188 :S 1knwA 147 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=34088 # 1ogdA.180.109 read from T0547.t2k.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)I180 (1ogdA)A110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1ogdA)G115 because G (3-10) conformation "forbidden" or filtered. T0547 181 :GLRV 1ogdA 111 :VIRT T0547 186 :LHS 1ogdA 116 :EFT Number of specific fragments extracted= 2 number of extra gaps= 2 total=34090 # 7odcA.180.150 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 T0547 180 :IGLRVR 7odcA 151 :LVLRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34091 # 2fa8A.180.9 read from T0547.t2k.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)R183 (2fa8A)R11 because P (beta_P) conformation "forbidden" or filtered. T0547 180 :IGL 2fa8A 8 :IAI T0547 184 :VRLHS 2fa8A 12 :YCTQC Number of specific fragments extracted= 2 number of extra gaps= 1 total=34093 # 1vyrA.180.229 read from T0547.t2k.many.frag # found chain 1vyrA in training set Warning: unaligning (T0547)S188 (1vyrA)G238 because S (epsilon) conformation "forbidden" or filtered. T0547 180 :IGLRVRLH 1vyrA 230 :IGIRVSPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=34094 # 2aqjA.180.33 read from T0547.t2k.many.frag # found chain 2aqjA in training set T0547 180 :IGLRVRLHS 2aqjA 34 :ITLIESAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34095 # 1ezwA.180.5 read from T0547.t2k.many.frag # found chain 1ezwA in training set T0547 180 :IGLRVRLHS 1ezwA 6 :FGIELLPDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=34096 # 1rttA.180.74 read from T0547.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)I180 (1rttA)A75 because Y (epsilon') conformation "forbidden" or filtered. T0547 181 :GLRVRLHS 1rttA 76 :LLFATPEY Number of specific fragments extracted= 1 number of extra gaps= 1 total=34097 # 1kqpA.180.73 read from T0547.t2k.many.frag # found chain 1kqpA in training set Warning: unaligning (T0547)S188 (1kqpA)G82 because S (epsilon) conformation "forbidden" or filtered. T0547 180 :IGLRVRLH 1kqpA 74 :FIAVRLPH Number of specific fragments extracted= 1 number of extra gaps= 1 total=34098 # 1pz4A.180.35 read from T0547.t2k.many.frag # found chain 1pz4A in training set T0547 180 :IGLRVRLHS 1pz4A 30 :YKFRITQGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34099 # 1tqjA.180.114 read from T0547.t2k.many.frag # found chain 1tqjA in training set T0547 180 :IGLRVRLHS 1tqjA 115 :AGAVLNPST Number of specific fragments extracted= 1 number of extra gaps= 0 total=34100 # 1iuqA.180.131 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)G181 (1iuqA)V134 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (1iuqA)N138 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (1iuqA)N138 T0547 180 :I 1iuqA 133 :V T0547 182 :LR 1iuqA 135 :LI T0547 186 :LHS 1iuqA 139 :HQT Number of specific fragments extracted= 3 number of extra gaps= 2 total=34103 # 1w8sA.180.74 read from T0547.t2k.many.frag # found chain 1w8sA in template set T0547 180 :IGLRVRLHS 1w8sA 75 :LILKLNGKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34104 # 1eokA.180.10 read from T0547.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0547)R185 (1eokA)I16 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1eokA)G19 because T (delta_L) conformation "forbidden" or filtered. T0547 180 :IGLRV 1eokA 11 :CIAYY T0547 186 :LH 1eokA 17 :TD Number of specific fragments extracted= 2 number of extra gaps= 2 total=34106 # 1odzA.180.167 read from T0547.t2k.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)H187 (1odzA)E212 because L (left) conformation "forbidden" or filtered. T0547 180 :IGLRVRL 1odzA 205 :VIFRLYH T0547 188 :S 1odzA 213 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=34108 # 1sfsA.180.54 read from T0547.t2k.many.frag # found chain 1sfsA in training set Warning: unaligning (T0547)L186 (1sfsA)S37 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :IGLRVR 1sfsA 31 :FWGRYL T0547 187 :HS 1sfsA 38 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34110 # 1pv1A.180.232 read from T0547.t2k.many.frag # found chain 1pv1A in template set Warning: unaligning (T0547)G181 (1pv1A)L234 because P (beta_P) conformation "forbidden" or filtered. T0547 180 :I 1pv1A 233 :I T0547 182 :LRVRLHS 1pv1A 235 :IHVGDSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=34112 # 1cvrA.180.71 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)R185 (1cvrA)G77 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :IGLRV 1cvrA 72 :YVLLV T0547 186 :LHS 1cvrA 78 :DHK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34114 # 1dekA.180.191 read from T0547.t2k.many.frag # found chain 1dekA in template set T0547 180 :IGLRVRLHS 1dekA 192 :VIHVVRPGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=34115 # 1k5cA.180.222 read from T0547.t2k.many.frag # found chain 1k5cA in training set T0547 180 :IGLRVRLHS 1k5cA 223 :YGVRIKAQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=34116 # 1gnuA.180.30 read from T0547.t2k.many.frag # found chain 1gnuA in training set T0547 180 :IGLRVRLHS 1gnuA 31 :VIVEKAPKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34117 # 1vpqA.180.199 read from T0547.t2k.many.frag # found chain 1vpqA in template set Warning: unaligning (T0547)L186 (1vpqA)G194 because S (epsilon) conformation "forbidden" or filtered. T0547 180 :IGLRVR 1vpqA 188 :AYFRFH T0547 187 :HS 1vpqA 195 :RN Number of specific fragments extracted= 2 number of extra gaps= 1 total=34119 # 1wouA.180.26 read from T0547.t2k.many.frag # found chain 1wouA in training set T0547 180 :IGLRVRLHS 1wouA 27 :IFAYFTGSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34120 # 1f9vA.180.6 read from T0547.t2k.many.frag # found chain 1f9vA in training set Warning: unaligning (T0547)R185 (1f9vA)R394 because P (beta_P) conformation "forbidden" or filtered. T0547 180 :IGLRV 1f9vA 389 :VYCRI T0547 186 :LHS 1f9vA 395 :PAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34122 # 1kgdA.180.119 read from T0547.t2k.many.frag # found chain 1kgdA in training set Warning: unaligning (T0547)H187 (1kgdA)T856 because G (3-10) conformation "forbidden" or filtered. T0547 180 :IGLRVRL 1kgdA 849 :VVFIAAP T0547 188 :S 1kgdA 857 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=34124 # 1lu4A.180.27 read from T0547.t2k.many.frag # found chain 1lu4A in training set T0547 180 :IGLRVRLHS 1lu4A 1028 :VLWFWTPWC Number of specific fragments extracted= 1 number of extra gaps= 0 total=34125 # 1crzA.180.72 read from T0547.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)L182 (1crzA)G81 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :IG 1crzA 79 :VV T0547 183 :RVRLHS 1crzA 82 :QVTPNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=34127 # 1q77A.180.5 read from T0547.t2k.many.frag # found chain 1q77A in template set T0547 180 :IGLRVRLHS 1q77A 3 :VLLVLTDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=34128 # 1qo0D.180.54 read from T0547.t2k.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)R183 (1qo0D)T58 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :IGL 1qo0D 55 :VVF T0547 184 :VRLHS 1qo0D 59 :SIFQN Number of specific fragments extracted= 2 number of extra gaps= 1 total=34130 # 2amlA.180.99 read from T0547.t2k.many.frag # found chain 2amlA in training set Warning: unaligning (T0547)S188 (2amlA)G96 because T (delta_L) conformation "forbidden" or filtered. T0547 180 :IGLRVRLH 2amlA 88 :LVIGISQS Number of specific fragments extracted= 1 number of extra gaps= 1 total=34131 # 1knwA.181.139 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A189 (1knwA)G148 because Y (epsilon') conformation "forbidden" or filtered. T0547 181 :GLRVRLHS 1knwA 140 :WLRVNPGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=34132 # 2aqjA.181.34 read from T0547.t2k.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)G181 (2aqjA)T35 because E (beta_S) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 2aqjA 36 :LIESAAIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=34133 # 1pz4A.181.36 read from T0547.t2k.many.frag # found chain 1pz4A in training set Warning: unaligning (T0547)G181 (1pz4A)K31 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1pz4A)G37 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1pz4A)G38 because T (delta_L) conformation "forbidden" or filtered. T0547 182 :LRVRL 1pz4A 32 :FRITQ T0547 189 :A 1pz4A 39 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=34135 # 2fa8A.181.10 read from T0547.t2k.many.frag # found chain 2fa8A in template set T0547 181 :GLRVRLHSA 2fa8A 9 :AIRYCTQCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=34136 # 1ezwA.181.6 read from T0547.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)R185 (1ezwA)L11 because P (beta_P) conformation "forbidden" or filtered. T0547 181 :GLRV 1ezwA 7 :GIEL T0547 186 :LHSA 1ezwA 12 :PDDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34138 # 1f9vA.181.7 read from T0547.t2k.many.frag # found chain 1f9vA in training set T0547 181 :GLRVRLHSA 1f9vA 390 :YCRIRPALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34139 # 1eokA.181.11 read from T0547.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0547)R185 (1eokA)I16 because P (beta_P) conformation "forbidden" or filtered. T0547 181 :GLRV 1eokA 12 :IAYY T0547 186 :LHSA 1eokA 17 :TDGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=34141 # 1vyrA.181.230 read from T0547.t2k.many.frag # found chain 1vyrA in training set Warning: unaligning (T0547)S188 (1vyrA)G238 because S (epsilon) conformation "forbidden" or filtered. T0547 181 :GLRVRLH 1vyrA 231 :GIRVSPI T0547 189 :A 1vyrA 239 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=34143 # 1crzA.181.73 read from T0547.t2k.many.frag # found chain 1crzA in template set T0547 181 :GLRVRLHSA 1crzA 80 :VGQVTPNPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=34144 # 1tqjA.181.115 read from T0547.t2k.many.frag # found chain 1tqjA in training set Warning: unaligning (T0547)G181 (1tqjA)G116 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1tqjA)N120 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRV 1tqjA 117 :AVL T0547 186 :LHSA 1tqjA 121 :PSTP Number of specific fragments extracted= 2 number of extra gaps= 2 total=34146 # 1k5cA.181.223 read from T0547.t2k.many.frag # found chain 1k5cA in training set T0547 181 :GLRVRLHSA 1k5cA 224 :GVRIKAQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34147 # 1ogdA.181.110 read from T0547.t2k.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)H187 (1ogdA)F117 because G (3-10) conformation "forbidden" or filtered. T0547 181 :GLRVRL 1ogdA 111 :VIRTGE T0547 188 :SA 1ogdA 118 :TP Number of specific fragments extracted= 2 number of extra gaps= 1 total=34149 # 1dekA.181.192 read from T0547.t2k.many.frag # found chain 1dekA in template set Warning: unaligning (T0547)G181 (1dekA)I193 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1dekA)G199 because L (left) conformation "forbidden" or filtered. T0547 182 :LRVRL 1dekA 194 :HVVRP T0547 188 :SA 1dekA 200 :QK Number of specific fragments extracted= 2 number of extra gaps= 2 total=34151 # 1rttA.181.75 read from T0547.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)G181 (1rttA)L76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1rttA)F78 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :L 1rttA 77 :L T0547 184 :VRLHSA 1rttA 79 :ATPEYN Number of specific fragments extracted= 2 number of extra gaps= 2 total=34153 1hjrA expands to /projects/compbio/data/pdb/1hjr.pdb.gz 1hjrA:# 1hjrA.181.2 read from T0547.t2k.many.frag # adding 1hjrA to template set # found chain 1hjrA in template set T0547 181 :GLRVRLHSA 1hjrA 3 :ILGIDPGSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=34154 1x3mA expands to /projects/compbio/data/pdb/1x3m.pdb.gz 1x3mA:# 1x3mA.181.19 read from T0547.t2k.many.frag # adding 1x3mA to template set # found chain 1x3mA in template set Warning: unaligning (T0547)H187 (1x3mA)G13 because P (beta_P) conformation "forbidden" or filtered. T0547 181 :GLRVRL 1x3mA 7 :VLVINC T0547 188 :SA 1x3mA 14 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=34156 # 1ob8A.181.84 read from T0547.t2k.many.frag # found chain 1ob8A in training set T0547 181 :GLRVRLHSA 1ob8A 85 :LIAIKFKQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34157 # 1kqpA.181.74 read from T0547.t2k.many.frag # found chain 1kqpA in training set Warning: unaligning (T0547)S188 (1kqpA)G82 because S (epsilon) conformation "forbidden" or filtered. T0547 181 :GLRVRLH 1kqpA 75 :IAVRLPH T0547 189 :A 1kqpA 83 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=34159 # 1lu4A.181.28 read from T0547.t2k.many.frag # found chain 1lu4A in training set T0547 181 :GLRVRLHSA 1lu4A 1029 :LWFWTPWCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34160 1zpdA expands to /projects/compbio/data/pdb/1zpd.pdb.gz 1zpdA:Skipped atom 3555, because occupancy 0.500 <= existing 0.500 in 1zpdA Skipped atom 3557, because occupancy 0.500 <= existing 0.500 in 1zpdA Skipped atom 3559, because occupancy 0.500 <= existing 0.500 in 1zpdA Skipped atom 3561, because occupancy 0.500 <= existing 0.500 in 1zpdA Skipped atom 4169, because occupancy 0.400 <= existing 0.600 in 1zpdA Skipped atom 4171, because occupancy 0.400 <= existing 0.600 in 1zpdA Skipped atom 4173, because occupancy 0.400 <= existing 0.600 in 1zpdA Skipped atom 4175, because occupancy 0.400 <= existing 0.600 in 1zpdA # 1zpdA.181.95 read from T0547.t2k.many.frag # adding 1zpdA to template set # found chain 1zpdA in template set Warning: unaligning (T0547)R185 (1zpdA)A100 because Y (epsilon') conformation "forbidden" or filtered. T0547 181 :GLRV 1zpdA 96 :LISG T0547 186 :LHSA 1zpdA 101 :PNNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=34162 # 7odcA.181.151 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)R185 (7odcA)A156 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 T0547 181 :GLRV 7odcA 152 :VLRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=34163 # 1sfsA.181.55 read from T0547.t2k.many.frag # found chain 1sfsA in training set Warning: unaligning (T0547)G181 (1sfsA)W32 because E (beta_S) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1sfsA 33 :GRYLSEVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=34164 # 1auoA.181.160 read from T0547.t2k.many.frag # found chain 1auoA in training set Warning: unaligning (T0547)G181 (1auoA)L161 because E (beta_S) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1auoA 162 :CLHGQYDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=34165 # 1gqiA.181.235 read from T0547.t2k.many.frag # found chain 1gqiA in training set T0547 181 :GLRVRLHSA 1gqiA 240 :YLSINFNSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34166 # 2c3vA.181.12 read from T0547.t2k.many.frag # found chain 2c3vA in training set Warning: unaligning (T0547)H187 (2c3vA)G96 because G (3-10) conformation "forbidden" or filtered. T0547 181 :GLRVRL 2c3vA 90 :TIYYKT T0547 188 :SA 2c3vA 97 :WT Number of specific fragments extracted= 2 number of extra gaps= 1 total=34168 # 1uekA.181.153 read from T0547.t2k.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)H187 (1uekA)G160 because L (left) conformation "forbidden" or filtered. T0547 181 :GLRVRL 1uekA 154 :AVVFFP T0547 188 :SA 1uekA 161 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=34170 # 1q77A.181.6 read from T0547.t2k.many.frag # found chain 1q77A in template set Warning: unaligning (T0547)G181 (1q77A)L4 because E (beta_S) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1q77A 5 :LVLTDAYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=34171 # 1y93A.181.55 read from T0547.t2k.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)G181 (1y93A)L160 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1y93A 161 :VVFARGAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=34172 # 1zdyA.181.48 read from T0547.t2k.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)H187 (1zdyA)G55 because S (epsilon) conformation "forbidden" or filtered. T0547 181 :GLRVRL 1zdyA 49 :VFSMAS T0547 188 :SA 1zdyA 56 :RH Number of specific fragments extracted= 2 number of extra gaps= 1 total=34174 # 1mpgA.181.46 read from T0547.t2k.many.frag # found chain 1mpgA in training set T0547 181 :GLRVRLHSA 1mpgA 47 :VVTAIPDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34175 # 1knwA.182.140 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)R183 (1knwA)R142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1knwA)H149 because E (beta_S) conformation "forbidden" or filtered. T0547 182 :L 1knwA 141 :L T0547 184 :VRLHSA 1knwA 143 :VNPGFG Number of specific fragments extracted= 2 number of extra gaps= 2 total=34177 # 1pz4A.182.37 read from T0547.t2k.many.frag # found chain 1pz4A in training set Warning: unaligning (T0547)H187 (1pz4A)G37 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1pz4A)G38 because T (delta_L) conformation "forbidden" or filtered. T0547 182 :LRVRL 1pz4A 32 :FRITQ T0547 189 :AG 1pz4A 39 :KV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34179 # 1eokA.182.12 read from T0547.t2k.many.frag # found chain 1eokA in training set T0547 182 :LRVRLHSAG 1eokA 13 :AYYITDGRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=34180 # 1mpgA.182.47 read from T0547.t2k.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)G190 (1mpgA)R56 because G (3-10) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1mpgA 48 :VTAIPDIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=34181 # 1crzA.182.74 read from T0547.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)L182 (1crzA)G81 because Y (epsilon') conformation "forbidden" or filtered. T0547 183 :RVRLHSAG 1crzA 82 :QVTPNPDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=34182 # 1k5cA.182.224 read from T0547.t2k.many.frag # found chain 1k5cA in training set T0547 182 :LRVRLHSAG 1k5cA 225 :VRIKAQRTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34183 # 1ob8A.182.85 read from T0547.t2k.many.frag # found chain 1ob8A in training set Warning: unaligning (T0547)A189 (1ob8A)V93 because G (3-10) conformation "forbidden" or filtered. T0547 182 :LRVRLHS 1ob8A 86 :IAIKFKQ T0547 190 :G 1ob8A 94 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=34185 # 2c3vA.182.13 read from T0547.t2k.many.frag # found chain 2c3vA in training set Warning: unaligning (T0547)G190 (2c3vA)H99 because D (zeta) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 2c3vA 91 :IYYKTGWT Number of specific fragments extracted= 1 number of extra gaps= 1 total=34186 # 1zj8A.182.238 read from T0547.t2k.many.frag # found chain 1zj8A in template set T0547 182 :LRVRLHSAG 1zj8A 228 :IGVNHPEHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34187 # 1zpdA.182.96 read from T0547.t2k.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)R185 (1zpdA)A100 because Y (epsilon') conformation "forbidden" or filtered. T0547 182 :LRV 1zpdA 97 :ISG T0547 186 :LHSAG 1zpdA 101 :PNNND Number of specific fragments extracted= 2 number of extra gaps= 1 total=34189 # 1ezwA.182.7 read from T0547.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)A189 (1ezwA)K15 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRVRLHS 1ezwA 8 :IELLPDD T0547 190 :G 1ezwA 16 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=34191 # 1lfdA.182.5 read from T0547.t2k.many.frag # found chain 1lfdA in template set Warning: unaligning (T0547)A189 (1lfdA)D26 because D (zeta) conformation "forbidden" or filtered. T0547 182 :LRVRLHS 1lfdA 19 :IRVSLDV T0547 190 :G 1lfdA 27 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=34193 # 2aqjA.182.35 read from T0547.t2k.many.frag # found chain 2aqjA in training set T0547 182 :LRVRLHSAG 2aqjA 36 :LIESAAIPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=34194 # 1tqjA.182.116 read from T0547.t2k.many.frag # found chain 1tqjA in training set T0547 182 :LRVRLHSAG 1tqjA 117 :AVLNPSTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34195 # 1ogdA.182.111 read from T0547.t2k.many.frag # found chain 1ogdA in template set T0547 182 :LRVRLHSAG 1ogdA 112 :IRTGEFTPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=34196 # 1wn5A.182.30 read from T0547.t2k.many.frag # found chain 1wn5A in training set Warning: unaligning (T0547)A189 (1wn5A)G38 because T (delta_L) conformation "forbidden" or filtered. T0547 182 :LRVRLHS 1wn5A 31 :SAALSSD T0547 190 :G 1wn5A 39 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=34198 # 1zdyA.182.49 read from T0547.t2k.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)R185 (1zdyA)A53 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1zdyA)G55 because S (epsilon) conformation "forbidden" or filtered. T0547 182 :LRV 1zdyA 50 :FSM T0547 186 :L 1zdyA 54 :S T0547 188 :SAG 1zdyA 56 :RHS Number of specific fragments extracted= 3 number of extra gaps= 2 total=34201 # 1euvA.182.105 read from T0547.t2k.many.frag # found chain 1euvA in training set Warning: unaligning (T0547)R183 (1euvA)P507 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1euvA)N511 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1euvA)Q512 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1euvA)H514 because E (beta_S) conformation "forbidden" or filtered. T0547 182 :L 1euvA 506 :T T0547 184 :VRL 1euvA 508 :INL T0547 189 :A 1euvA 513 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=34204 # 1hjrA.182.3 read from T0547.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0547)G190 (1hjrA)V12 because E (beta_S) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1hjrA 4 :LGIDPGSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=34205 # 1x3mA.182.20 read from T0547.t2k.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)G190 (1x3mA)S16 because Y (epsilon') conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1x3mA 8 :LVINCGSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=34206 1tig expands to /projects/compbio/data/pdb/1tig.pdb.gz 1tig:Warning: there is no chain 1tig will retry with 1tigA # 1tig.182.39 read from T0547.t2k.many.frag # adding 1tig to template set # found chain 1tig in template set Warning: unaligning (T0547)G190 (1tig)A126 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1tig 118 :ATIRFKGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=34207 # 1iu8A.182.61 read from T0547.t2k.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)G190 (1iu8A)R70 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1iu8A 62 :INLGLAPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=34208 1p35A expands to /projects/compbio/data/pdb/1p35.pdb.gz 1p35A:# 1p35A.182.14 read from T0547.t2k.many.frag # adding 1p35A to template set # found chain 1p35A in template set T0547 182 :LRVRLHSAG 1p35A 16 :IRDCQVDKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=34209 # 1eokA.182.83 read from T0547.t2k.many.frag # found chain 1eokA in training set T0547 182 :LRVRLHSAG 1eokA 84 :QNIDDDVSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=34210 # 1gqiA.182.236 read from T0547.t2k.many.frag # found chain 1gqiA in training set T0547 182 :LRVRLHSAG 1gqiA 241 :LSINFNSPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=34211 # 2cuaA.182.71 read from T0547.t2k.many.frag # found chain 2cuaA in training set Warning: unaligning (T0547)R185 (2cuaA)T108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2cuaA)I113 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRV 2cuaA 105 :FKI T0547 186 :LHSA 2cuaA 109 :SPDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=34213 # 1rttA.182.76 read from T0547.t2k.many.frag # found chain 1rttA in training set T0547 182 :LRVRLHSAG 1rttA 77 :LFATPEYNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=34214 # 1f9vA.182.8 read from T0547.t2k.many.frag # found chain 1f9vA in training set T0547 182 :LRVRLHSAG 1f9vA 391 :CRIRPALKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=34215 2akaB expands to /projects/compbio/data/pdb/2aka.pdb.gz 2akaB:Skipped atom 6896, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 6898, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 6997, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 6999, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7001, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7003, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7005, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7007, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7009, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7460, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7462, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7464, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7466, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7468, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7470, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7472, because occupancy 0.500 <= existing 0.500 in 2akaB # 2akaB.182.116 read from T0547.t2k.many.frag # adding 2akaB to template set # found chain 2akaB in template set Warning: unaligning (T0547)L186 (2akaB)S126 because Y (epsilon') conformation "forbidden" or filtered. T0547 182 :LRVR 2akaB 122 :LRVY T0547 187 :HSAG 2akaB 127 :PHVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34217 # 2fa8A.182.11 read from T0547.t2k.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)R185 (2fa8A)C13 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (2fa8A)N17 because L (left) conformation "forbidden" or filtered. T0547 182 :LRV 2fa8A 10 :IRY T0547 186 :LHS 2fa8A 14 :TQC T0547 190 :G 2fa8A 18 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=34220 # 1knwA.183.141 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)H187 (1knwA)G146 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1knwA)G148 because Y (epsilon') conformation "forbidden" or filtered. T0547 183 :RVRL 1knwA 142 :RVNP T0547 188 :S 1knwA 147 :F T0547 190 :GV 1knwA 149 :HG Number of specific fragments extracted= 3 number of extra gaps= 2 total=34223 # 1mpgA.183.48 read from T0547.t2k.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)G190 (1mpgA)R56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1mpgA)H57 because L (left) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1mpgA 49 :TAIPDIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=34224 # 1eokA.183.13 read from T0547.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0547)R183 (1eokA)Y14 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1eokA)G19 because T (delta_L) conformation "forbidden" or filtered. T0547 184 :VRLH 1eokA 15 :YITD T0547 189 :AGV 1eokA 20 :RNP Number of specific fragments extracted= 2 number of extra gaps= 2 total=34226 # 2c3vA.183.14 read from T0547.t2k.many.frag # found chain 2c3vA in training set Warning: unaligning (T0547)R185 (2c3vA)K94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (2c3vA)W97 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RV 2c3vA 92 :YY T0547 186 :LH 2c3vA 95 :TG T0547 189 :AGV 2c3vA 98 :THP Number of specific fragments extracted= 3 number of extra gaps= 2 total=34229 # 1lfdA.183.6 read from T0547.t2k.many.frag # found chain 1lfdA in template set Warning: unaligning (T0547)S188 (1lfdA)V25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1lfdA)D26 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1lfdA)N27 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1lfdA)G28 because T (delta_L) conformation "forbidden" or filtered. T0547 183 :RVRLH 1lfdA 20 :RVSLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=34230 # 1crzA.183.75 read from T0547.t2k.many.frag # found chain 1crzA in template set T0547 183 :RVRLHSAGV 1crzA 82 :QVTPNPDGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34231 # 1pz4A.183.38 read from T0547.t2k.many.frag # found chain 1pz4A in training set Warning: unaligning (T0547)S188 (1pz4A)G38 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1pz4A)V40 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RVRLH 1pz4A 33 :RITQG T0547 189 :A 1pz4A 39 :K T0547 191 :V 1pz4A 41 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=34234 # 1euvA.183.106 read from T0547.t2k.many.frag # found chain 1euvA in training set Warning: unaligning (T0547)H187 (1euvA)N511 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1euvA)Q512 because L (left) conformation "forbidden" or filtered. T0547 183 :RVRL 1euvA 507 :PINL T0547 189 :AGV 1euvA 513 :SHW Number of specific fragments extracted= 2 number of extra gaps= 1 total=34236 # 1zj8A.183.239 read from T0547.t2k.many.frag # found chain 1zj8A in template set T0547 183 :RVRLHSAGV 1zj8A 229 :GVNHPEHGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34237 # 1zpdA.183.97 read from T0547.t2k.many.frag # found chain 1zpdA in template set T0547 183 :RVRLHSAGV 1zpdA 98 :SGAPNNNDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=34238 # 1hjrA.183.4 read from T0547.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0547)G190 (1hjrA)V12 because E (beta_S) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1hjrA 5 :GIDPGSR T0547 191 :V 1hjrA 13 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=34240 # 1wn5A.183.31 read from T0547.t2k.many.frag # found chain 1wn5A in training set Warning: unaligning (T0547)G190 (1wn5A)R39 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1wn5A 32 :AALSSDG T0547 191 :V 1wn5A 40 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=34242 # 1k5cA.183.225 read from T0547.t2k.many.frag # found chain 1k5cA in training set Warning: unaligning (T0547)G190 (1k5cA)A233 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1k5cA 226 :RIKAQRT T0547 191 :V 1k5cA 234 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=34244 # 1q52A.183.87 read from T0547.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)L186 (1q52A)G91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1q52A)P92 because C (cis) conformation "forbidden" or filtered. T0547 183 :RVR 1q52A 88 :TGN T0547 188 :SAGV 1q52A 93 :SPKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=34246 # 1tig.183.40 read from T0547.t2k.many.frag # found chain 1tig in template set Warning: unaligning (T0547)R185 (1tig)R121 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1tig)A126 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RV 1tig 119 :TI T0547 186 :LHSA 1tig 122 :FKGR T0547 191 :V 1tig 127 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=34249 1vc1A expands to /projects/compbio/data/pdb/1vc1.pdb.gz 1vc1A:# 1vc1A.183.17 read from T0547.t2k.many.frag # adding 1vc1A to template set # found chain 1vc1A in template set Warning: unaligning (T0547)L186 (1vc1A)G21 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1vc1A)D24 because Y (epsilon') conformation "forbidden" or filtered. T0547 183 :RVR 1vc1A 18 :RVQ T0547 187 :HS 1vc1A 22 :DI T0547 190 :GV 1vc1A 25 :AY Number of specific fragments extracted= 3 number of extra gaps= 2 total=34252 # 1xkrA.183.64 read from T0547.t2k.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)H187 (1xkrA)T68 because Y (epsilon') conformation "forbidden" or filtered. T0547 183 :RVRL 1xkrA 64 :KMPV T0547 188 :SAGV 1xkrA 69 :GDIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34254 # 1zdyA.183.50 read from T0547.t2k.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)R185 (1zdyA)A53 because Y (epsilon') conformation "forbidden" or filtered. T0547 183 :RV 1zdyA 51 :SM T0547 186 :LHSAGV 1zdyA 54 :SGRHST Number of specific fragments extracted= 2 number of extra gaps= 1 total=34256 # 1ob8A.183.86 read from T0547.t2k.many.frag # found chain 1ob8A in training set T0547 183 :RVRLHSAGV 1ob8A 87 :AIKFKQVHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34257 # 1h72C.183.79 read from T0547.t2k.many.frag # found chain 1h72C in training set T0547 183 :RVRLHSAGV 1h72C 84 :TIKKGVKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34258 # 1ogdA.183.112 read from T0547.t2k.many.frag # found chain 1ogdA in template set T0547 183 :RVRLHSAGV 1ogdA 113 :RTGEFTPYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34259 1q2lA expands to /projects/compbio/data/pdb/1q2l.pdb.gz 1q2lA:# 1q2lA.183.256 read from T0547.t2k.many.frag # adding 1q2lA to template set # found chain 1q2lA in template set T0547 183 :RVRLHSAGV 1q2lA 280 :HYVPALPRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34260 # 1kv7A.183.62 read from T0547.t2k.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)G190 (1kv7A)T98 because Y (epsilon') conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1kv7A 91 :YNQLTEE T0547 191 :V 1kv7A 99 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=34262 1fjgS expands to /projects/compbio/data/pdb/1fjg.pdb.gz 1fjgS:# 1fjgS.183.49 read from T0547.t2k.many.frag # adding 1fjgS to template set # found chain 1fjgS in template set Warning: unaligning (T0547)H187 (1fjgS)G54 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1fjgS)Q56 because E (beta_S) conformation "forbidden" or filtered. T0547 183 :RVRL 1fjgS 50 :AVYN T0547 188 :S 1fjgS 55 :K T0547 190 :GV 1fjgS 57 :HV Number of specific fragments extracted= 3 number of extra gaps= 2 total=34265 1su0B expands to /projects/compbio/data/pdb/1su0.pdb.gz 1su0B:# 1su0B.183.46 read from T0547.t2k.many.frag # adding 1su0B to template set # found chain 1su0B in template set Warning: unaligning (T0547)R183 (1su0B)T47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1su0B)E52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1su0B)K54 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRLH 1su0B 48 :VKFD T0547 189 :A 1su0B 53 :D T0547 191 :V 1su0B 55 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=34268 # 1ryaA.183.21 read from T0547.t2k.many.frag # found chain 1ryaA in training set Warning: unaligning (T0547)G190 (1ryaA)R29 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1ryaA)G30 because L (left) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1ryaA 22 :DFIVENS Number of specific fragments extracted= 1 number of extra gaps= 1 total=34269 # 1o12A.183.162 read from T0547.t2k.many.frag # found chain 1o12A in template set Warning: unaligning (T0547)H187 (1o12A)E155 because G (3-10) conformation "forbidden" or filtered. T0547 183 :RVRL 1o12A 151 :TFAP T0547 188 :SAGV 1o12A 156 :IESS Number of specific fragments extracted= 2 number of extra gaps= 1 total=34271 # 1tqjA.183.117 read from T0547.t2k.many.frag # found chain 1tqjA in training set Warning: unaligning (T0547)R185 (1tqjA)N120 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RV 1tqjA 118 :VL T0547 186 :LHSAGV 1tqjA 121 :PSTPLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=34273 1q3iA expands to /projects/compbio/data/pdb/1q3i.pdb.gz 1q3iA:# 1q3iA.183.108 read from T0547.t2k.many.frag # adding 1q3iA to template set # found chain 1q3iA in template set T0547 183 :RVRLHSAGV 1q3iA 486 :HEREDNPQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34274 2c27A expands to /projects/compbio/data/pdb/2c27.pdb.gz 2c27A:# 2c27A.183.65 read from T0547.t2k.many.frag # adding 2c27A to template set # found chain 2c27A in template set Warning: unaligning (T0547)G190 (2c27A)A73 because G (3-10) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 2c27A 66 :NLSPPRG T0547 191 :V 2c27A 74 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=34276 # 1mpgA.184.49 read from T0547.t2k.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)G190 (1mpgA)R56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1mpgA)H57 because L (left) conformation "forbidden" or filtered. T0547 184 :VRLHSA 1mpgA 50 :AIPDIA T0547 192 :G 1mpgA 58 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=34278 # 1knwA.184.142 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)H187 (1knwA)G146 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1knwA)G150 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1knwA)H151 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRL 1knwA 143 :VNP T0547 188 :SAG 1knwA 147 :FGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=34280 # 1eokA.184.14 read from T0547.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0547)S188 (1eokA)G19 because T (delta_L) conformation "forbidden" or filtered. T0547 184 :VRLH 1eokA 15 :YITD T0547 189 :AGVG 1eokA 20 :RNPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=34282 # 1lfdA.184.7 read from T0547.t2k.many.frag # found chain 1lfdA in template set Warning: unaligning (T0547)H187 (1lfdA)D24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1lfdA)D26 because D (zeta) conformation "forbidden" or filtered. T0547 184 :VRL 1lfdA 21 :VSL T0547 188 :S 1lfdA 25 :V T0547 190 :GVG 1lfdA 27 :NGN Number of specific fragments extracted= 3 number of extra gaps= 2 total=34285 # 2c3vA.184.15 read from T0547.t2k.many.frag # found chain 2c3vA in training set T0547 184 :VRLHSAGVG 2c3vA 93 :YKTGWTHPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=34286 # 1zj8A.184.240 read from T0547.t2k.many.frag # found chain 1zj8A in template set Warning: unaligning (T0547)G190 (1zj8A)G236 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1zj8A)G238 because Y (epsilon') conformation "forbidden" or filtered. T0547 184 :VRLHSA 1zj8A 230 :VNHPEH T0547 191 :V 1zj8A 237 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=34288 # 1euvA.184.107 read from T0547.t2k.many.frag # found chain 1euvA in training set Warning: unaligning (T0547)H187 (1euvA)N511 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1euvA)Q512 because L (left) conformation "forbidden" or filtered. T0547 184 :VRL 1euvA 508 :INL T0547 189 :AGVG 1euvA 513 :SHWA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34290 # 1hjrA.184.5 read from T0547.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0547)G190 (1hjrA)V12 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1hjrA)G14 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRLHSA 1hjrA 6 :IDPGSR T0547 191 :V 1hjrA 13 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=34292 # 1pz4A.184.39 read from T0547.t2k.many.frag # found chain 1pz4A in training set Warning: unaligning (T0547)G190 (1pz4A)V40 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRLHSA 1pz4A 34 :ITQGGK T0547 191 :VG 1pz4A 41 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34294 # 1fjgS.184.50 read from T0547.t2k.many.frag # found chain 1fjgS in template set Warning: unaligning (T0547)R185 (1fjgS)Y52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1fjgS)G54 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1fjgS)P59 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :V 1fjgS 51 :V T0547 186 :L 1fjgS 53 :N T0547 188 :SAGV 1fjgS 55 :KQHV Number of specific fragments extracted= 3 number of extra gaps= 3 total=34297 # 1xkrA.184.65 read from T0547.t2k.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)H187 (1xkrA)T68 because Y (epsilon') conformation "forbidden" or filtered. T0547 184 :VRL 1xkrA 65 :MPV T0547 188 :SAGVG 1xkrA 69 :GDIEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=34299 1dabA expands to /projects/compbio/data/pdb/1dab.pdb.gz 1dabA:# 1dabA.184.519 read from T0547.t2k.many.frag # adding 1dabA to template set # found chain 1dabA in template set Warning: unaligning (T0547)A189 (1dabA)N525 because D (zeta) conformation "forbidden" or filtered. T0547 184 :VRLHS 1dabA 520 :YRLAA T0547 190 :GVG 1dabA 526 :GNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=34301 # 1o12A.184.163 read from T0547.t2k.many.frag # found chain 1o12A in template set Warning: unaligning (T0547)A189 (1o12A)E157 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRLHS 1o12A 152 :FAPEI T0547 190 :GVG 1o12A 158 :SSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34303 # 1vc1A.184.18 read from T0547.t2k.many.frag # found chain 1vc1A in template set Warning: unaligning (T0547)A189 (1vc1A)D24 because Y (epsilon') conformation "forbidden" or filtered. T0547 184 :VRLHS 1vc1A 19 :VQGDI T0547 190 :GVG 1vc1A 25 :AYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=34305 # 1q2lA.184.257 read from T0547.t2k.many.frag # found chain 1q2lA in template set T0547 184 :VRLHSAGVG 1q2lA 281 :YVPALPRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34306 # 1xmtA.184.27 read from T0547.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)S188 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. T0547 184 :VRLH 1xmtA 28 :YKMR T0547 190 :GVG 1xmtA 34 :GKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34308 # 1crzA.184.76 read from T0547.t2k.many.frag # found chain 1crzA in template set T0547 184 :VRLHSAGVG 1crzA 83 :VTPNPDGSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=34309 1unnC expands to /projects/compbio/data/pdb/1unn.pdb.gz 1unnC:# 1unnC.184.53 read from T0547.t2k.many.frag # adding 1unnC to template set # found chain 1unnC in template set Warning: unaligning (T0547)G190 (1unnC)Q296 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRLHSA 1unnC 290 :LKFDDF T0547 191 :VG 1unnC 297 :QT Number of specific fragments extracted= 2 number of extra gaps= 1 total=34311 # 1tig.184.41 read from T0547.t2k.many.frag # found chain 1tig in template set Warning: unaligning (T0547)S188 (1tig)G124 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1tig)T128 because G (3-10) conformation "forbidden" or filtered. T0547 184 :VRLH 1tig 120 :IRFK T0547 189 :AGV 1tig 125 :RAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=34313 # 1zpdA.184.98 read from T0547.t2k.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)R185 (1zpdA)A100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1zpdA)D105 because G (3-10) conformation "forbidden" or filtered. T0547 184 :V 1zpdA 99 :G T0547 186 :LHSA 1zpdA 101 :PNNN T0547 191 :VG 1zpdA 106 :HA Number of specific fragments extracted= 3 number of extra gaps= 2 total=34316 # 1q52A.184.88 read from T0547.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)L186 (1q52A)G91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1q52A)P92 because C (cis) conformation "forbidden" or filtered. T0547 184 :VR 1q52A 89 :GN T0547 188 :SAGVG 1q52A 93 :SPKDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=34318 # 1wn5A.184.32 read from T0547.t2k.many.frag # found chain 1wn5A in training set Warning: unaligning (T0547)G190 (1wn5A)R39 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRLHSA 1wn5A 33 :ALSSDG T0547 191 :VG 1wn5A 40 :IF Number of specific fragments extracted= 2 number of extra gaps= 1 total=34320 # 1ryaA.184.22 read from T0547.t2k.many.frag # found chain 1ryaA in training set Warning: unaligning (T0547)G190 (1ryaA)R29 because G (3-10) conformation "forbidden" or filtered. T0547 184 :VRLHSA 1ryaA 23 :FIVENS T0547 191 :VG 1ryaA 30 :GE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34322 # 1h72C.184.80 read from T0547.t2k.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)G192 (1h72C)S93 because G (3-10) conformation "forbidden" or filtered. T0547 184 :VRLHSAGV 1h72C 85 :IKKGVKAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=34323 # 1kv7A.184.63 read from T0547.t2k.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)R185 (1kv7A)Q93 because G (3-10) conformation "forbidden" or filtered. T0547 184 :V 1kv7A 92 :N T0547 186 :LHSAGVG 1kv7A 94 :LTEETTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34325 # 2f1fA.184.36 read from T0547.t2k.many.frag # found chain 2f1fA in training set Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE in next template residue (2f1fA)D40 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)D40 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE in next template residue (2f1fA)T42 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)T42 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)L43 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)S44 T0547 184 :VRL 2f1fA 36 :APT Number of specific fragments extracted= 1 number of extra gaps= 1 total=34326 # 2fokA.184.453 read from T0547.t2k.many.frag # found chain 2fokA in template set T0547 184 :VRLHSAGVG 2fokA 454 :YTVGSPIDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=34327 1cd9B expands to /projects/compbio/data/pdb/1cd9.pdb.gz 1cd9B:# 1cd9B.184.151 read from T0547.t2k.many.frag # adding 1cd9B to template set # found chain 1cd9B in template set T0547 184 :VRLHSAGVG 1cd9B 152 :YQPQLKGAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=34328 # 1q3iA.184.109 read from T0547.t2k.many.frag # found chain 1q3iA in template set T0547 184 :VRLHSAGVG 1q3iA 487 :EREDNPQSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=34329 # 1su0B.184.47 read from T0547.t2k.many.frag # found chain 1su0B in template set Warning: unaligning (T0547)S188 (1su0B)E52 because Y (epsilon') conformation "forbidden" or filtered. T0547 184 :VRLH 1su0B 48 :VKFD T0547 189 :AGVG 1su0B 53 :DKIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34331 # 1mpgA.185.50 read from T0547.t2k.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)V191 (1mpgA)H57 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1mpgA)T58 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLHSAG 1mpgA 51 :IPDIAR T0547 193 :I 1mpgA 59 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=34333 # 1eokA.185.15 read from T0547.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0547)S188 (1eokA)G19 because T (delta_L) conformation "forbidden" or filtered. T0547 185 :RLH 1eokA 16 :ITD T0547 189 :AGVGI 1eokA 20 :RNPTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=34335 # 2c3vA.185.16 read from T0547.t2k.many.frag # found chain 2c3vA in training set Warning: unaligning (T0547)G190 (2c3vA)H99 because D (zeta) conformation "forbidden" or filtered. T0547 185 :RLHSA 2c3vA 94 :KTGWT T0547 191 :VGI 2c3vA 100 :PHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=34337 # 1zj8A.185.241 read from T0547.t2k.many.frag # found chain 1zj8A in template set T0547 185 :RLHSAGVGI 1zj8A 231 :NHPEHGPGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34338 # 1lfdA.185.8 read from T0547.t2k.many.frag # found chain 1lfdA in template set Warning: unaligning (T0547)H187 (1lfdA)D24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1lfdA)V25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1lfdA)D26 because D (zeta) conformation "forbidden" or filtered. T0547 185 :RL 1lfdA 22 :SL T0547 190 :GVGI 1lfdA 27 :NGNM Number of specific fragments extracted= 2 number of extra gaps= 1 total=34340 # 1knwA.185.143 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A189 (1knwA)G148 because Y (epsilon') conformation "forbidden" or filtered. T0547 185 :RLHS 1knwA 144 :NPGF T0547 190 :GVGI 1knwA 149 :HGHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=34342 # 1hjrA.185.6 read from T0547.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0547)G190 (1hjrA)V12 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLHSA 1hjrA 7 :DPGSR T0547 191 :VGI 1hjrA 13 :TGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=34344 # 1euvA.185.108 read from T0547.t2k.many.frag # found chain 1euvA in training set Warning: unaligning (T0547)H187 (1euvA)N511 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1euvA)Q512 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1euvA)A516 because Y (epsilon') conformation "forbidden" or filtered. T0547 185 :RL 1euvA 509 :NL T0547 189 :AGV 1euvA 513 :SHW T0547 193 :I 1euvA 517 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=34347 # 1fjgS.185.51 read from T0547.t2k.many.frag # found chain 1fjgS in template set Warning: unaligning (T0547)R185 (1fjgS)Y52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1fjgS)P59 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :LHSAGV 1fjgS 53 :NGKQHV T0547 193 :I 1fjgS 60 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=34349 # 1xkrA.185.66 read from T0547.t2k.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)S188 (1xkrA)G69 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1xkrA)I71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (1xkrA)S74 because Y (epsilon') conformation "forbidden" or filtered. T0547 185 :RLH 1xkrA 66 :PVT T0547 189 :A 1xkrA 70 :D T0547 191 :VG 1xkrA 72 :EG Number of specific fragments extracted= 3 number of extra gaps= 3 total=34352 # 2f1fA.185.37 read from T0547.t2k.many.frag # found chain 2f1fA in training set Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE in next template residue (2f1fA)D40 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)D40 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE in next template residue (2f1fA)T42 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)T42 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)L43 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)S44 T0547 185 :RL 2f1fA 37 :PT T0547 193 :I 2f1fA 45 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=34354 # 1xmtA.185.28 read from T0547.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)S188 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. T0547 185 :RLH 1xmtA 29 :KMR T0547 189 :AGVGI 1xmtA 33 :NGKVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=34356 # 1o12A.185.164 read from T0547.t2k.many.frag # found chain 1o12A in template set T0547 185 :RLHSAGVGI 1o12A 153 :APEIESSEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34357 # 1dabA.185.520 read from T0547.t2k.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)A189 (1dabA)N525 because D (zeta) conformation "forbidden" or filtered. T0547 185 :RLHS 1dabA 521 :RLAA T0547 190 :GVGI 1dabA 526 :GNGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=34359 # 1q2lA.185.258 read from T0547.t2k.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)G190 (1q2lA)R287 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLHSA 1q2lA 282 :VPALP T0547 191 :VGI 1q2lA 288 :KVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34361 # 1q3iA.185.110 read from T0547.t2k.many.frag # found chain 1q3iA in template set Warning: unaligning (T0547)R185 (1q3iA)R488 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :LHSAGVGI 1q3iA 489 :EDNPQSHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=34362 # 1unnC.185.54 read from T0547.t2k.many.frag # found chain 1unnC in template set T0547 185 :RLHSAGVGI 1unnC 291 :KFDDFQQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34363 # 2fokA.185.454 read from T0547.t2k.many.frag # found chain 2fokA in template set T0547 185 :RLHSAGVGI 2fokA 455 :TVGSPIDYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34364 1ae9A expands to /projects/compbio/data/pdb/1ae9.pdb.gz 1ae9A:# 1ae9A.185.55 read from T0547.t2k.many.frag # adding 1ae9A to template set # found chain 1ae9A in template set Warning: unaligning (T0547)G192 (1ae9A)K239 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLHSAGV 1ae9A 232 :EQSKTGV T0547 193 :I 1ae9A 240 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=34366 # 1ogdA.185.114 read from T0547.t2k.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)I193 (1ogdA)C123 because Y (epsilon') conformation "forbidden" or filtered. T0547 185 :RLHSAGVG 1ogdA 115 :GEFTPYAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=34367 # 1kv7A.185.64 read from T0547.t2k.many.frag # found chain 1kv7A in training set T0547 185 :RLHSAGVGI 1kv7A 93 :QLTEETTLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=34368 # 1q52A.185.89 read from T0547.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)L186 (1q52A)G91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1q52A)P92 because C (cis) conformation "forbidden" or filtered. T0547 185 :R 1q52A 90 :N T0547 188 :SAGVGI 1q52A 93 :SPKDGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=34370 # 1wn5A.185.33 read from T0547.t2k.many.frag # found chain 1wn5A in training set Warning: unaligning (T0547)A189 (1wn5A)G38 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1wn5A)R39 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RLHS 1wn5A 34 :LSSD T0547 191 :VGI 1wn5A 40 :IFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=34372 # 1k2xA.185.85 read from T0547.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0547)G192 (1k2xA)A94 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLHSAGV 1k2xA 87 :MDGNTLK T0547 193 :I 1k2xA 95 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=34374 1c93A expands to /projects/compbio/data/pdb/1c93.pdb.gz 1c93A:# 1c93A.185.43 read from T0547.t2k.many.frag # adding 1c93A to template set # found chain 1c93A in template set Warning: unaligning (T0547)V191 (1c93A)K55 because L (left) conformation "forbidden" or filtered. T0547 185 :RLHSAG 1c93A 49 :NYDTGT T0547 192 :GI 1c93A 56 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34376 # 1pg6A.185.95 read from T0547.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)G190 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 185 :RLHSA 1pg6A 89 :APNTP T0547 191 :VGI 1pg6A 95 :QIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34378 # 2c27A.185.67 read from T0547.t2k.many.frag # found chain 2c27A in template set Warning: unaligning (T0547)H187 (2c27A)P70 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RL 2c27A 68 :SP T0547 188 :SAGVGI 2c27A 71 :RGAGGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34380 # 1wv8A.185.8 read from T0547.t2k.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)V191 (1wv8A)G15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1wv8A)V16 because Y (epsilon') conformation "forbidden" or filtered. T0547 185 :RLHSAG 1wv8A 9 :LWDGEA T0547 193 :I 1wv8A 17 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=34382 # 1tig.185.42 read from T0547.t2k.many.frag # found chain 1tig in template set Warning: unaligning (T0547)G190 (1tig)A126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1tig)T128 because G (3-10) conformation "forbidden" or filtered. T0547 185 :RLHSA 1tig 121 :RFKGR T0547 191 :V 1tig 127 :I T0547 193 :I 1tig 129 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=34385 # 1cd9B.185.152 read from T0547.t2k.many.frag # found chain 1cd9B in template set Warning: unaligning (T0547)S188 (1cd9B)L156 because Y (epsilon') conformation "forbidden" or filtered. T0547 185 :RLH 1cd9B 153 :QPQ T0547 189 :AGVGI 1cd9B 157 :KGANW Number of specific fragments extracted= 2 number of extra gaps= 1 total=34387 # 1mpgA.186.51 read from T0547.t2k.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)V191 (1mpgA)H57 because L (left) conformation "forbidden" or filtered. T0547 186 :LHSAG 1mpgA 52 :PDIAR T0547 192 :GIW 1mpgA 58 :TLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=34389 # 2c3vA.186.17 read from T0547.t2k.many.frag # found chain 2c3vA in training set T0547 186 :LHSAGVGIW 2c3vA 95 :TGWTHPHIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=34390 # 1eokA.186.16 read from T0547.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0547)S188 (1eokA)G19 because T (delta_L) conformation "forbidden" or filtered. T0547 186 :LH 1eokA 17 :TD T0547 189 :AGVGIW 1eokA 20 :RNPTFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34392 # 1zj8A.186.242 read from T0547.t2k.many.frag # found chain 1zj8A in template set T0547 186 :LHSAGVGIW 1zj8A 232 :HPEHGPGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=34393 # 1fjgS.186.52 read from T0547.t2k.many.frag # found chain 1fjgS in template set Warning: unaligning (T0547)H187 (1fjgS)G54 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1fjgS)Q56 because E (beta_S) conformation "forbidden" or filtered. T0547 186 :L 1fjgS 53 :N T0547 188 :S 1fjgS 55 :K T0547 190 :GVGIW 1fjgS 57 :HVPVY Number of specific fragments extracted= 3 number of extra gaps= 2 total=34396 # 1xkrA.186.67 read from T0547.t2k.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)H187 (1xkrA)T68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1xkrA)G69 because S (epsilon) conformation "forbidden" or filtered. T0547 186 :L 1xkrA 67 :V T0547 189 :AGVGIW 1xkrA 70 :DIEGSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34398 # 1hjrA.186.7 read from T0547.t2k.many.frag # found chain 1hjrA in template set T0547 186 :LHSAGVGIW 1hjrA 8 :PGSRVTGYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34399 # 1q3iA.186.111 read from T0547.t2k.many.frag # found chain 1q3iA in template set T0547 186 :LHSAGVGIW 1q3iA 489 :EDNPQSHVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34400 # 1euvA.186.109 read from T0547.t2k.many.frag # found chain 1euvA in training set Warning: unaligning (T0547)H187 (1euvA)N511 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1euvA)Q512 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1euvA)A516 because Y (epsilon') conformation "forbidden" or filtered. T0547 186 :L 1euvA 510 :L T0547 189 :AGV 1euvA 513 :SHW T0547 193 :IW 1euvA 517 :LG Number of specific fragments extracted= 3 number of extra gaps= 2 total=34403 # 1lfdA.186.9 read from T0547.t2k.many.frag # found chain 1lfdA in template set Warning: unaligning (T0547)V191 (1lfdA)G28 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1lfdA)Y31 because Y (epsilon') conformation "forbidden" or filtered. T0547 186 :LHSAG 1lfdA 23 :LDVDN T0547 192 :GI 1lfdA 29 :NM Number of specific fragments extracted= 2 number of extra gaps= 2 total=34405 # 2f1fA.186.38 read from T0547.t2k.many.frag # found chain 2f1fA in training set Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE in next template residue (2f1fA)D40 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)D40 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE in next template residue (2f1fA)T42 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)T42 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)L43 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)S44 T0547 186 :L 2f1fA 38 :T T0547 193 :IW 2f1fA 45 :RM Number of specific fragments extracted= 2 number of extra gaps= 1 total=34407 # 1o12A.186.165 read from T0547.t2k.many.frag # found chain 1o12A in template set T0547 186 :LHSAGVGIW 1o12A 154 :PEIESSELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34408 # 1rwrA.186.128 read from T0547.t2k.many.frag # found chain 1rwrA in training set Warning: unaligning (T0547)A189 (1rwrA)N132 because D (zeta) conformation "forbidden" or filtered. T0547 186 :LHS 1rwrA 129 :PSV T0547 190 :GVGIW 1rwrA 133 :GGRIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=34410 # 1ogdA.186.115 read from T0547.t2k.many.frag # found chain 1ogdA in template set T0547 186 :LHSAGVGIW 1ogdA 116 :EFTPYANCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34411 # 1ae9A.186.56 read from T0547.t2k.many.frag # found chain 1ae9A in template set T0547 186 :LHSAGVGIW 1ae9A 233 :QSKTGVKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34412 # 1kv7A.186.65 read from T0547.t2k.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)H187 (1kv7A)T95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1kv7A)E97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1kv7A)T98 because Y (epsilon') conformation "forbidden" or filtered. T0547 186 :L 1kv7A 94 :L T0547 188 :S 1kv7A 96 :E T0547 191 :VGIW 1kv7A 99 :TLHW Number of specific fragments extracted= 3 number of extra gaps= 2 total=34415 # 1c93A.186.44 read from T0547.t2k.many.frag # found chain 1c93A in template set Warning: unaligning (T0547)G190 (1c93A)T54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1c93A)K55 because L (left) conformation "forbidden" or filtered. T0547 186 :LHSA 1c93A 50 :YDTG T0547 192 :GIW 1c93A 56 :TAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=34417 # 1dabA.186.521 read from T0547.t2k.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)A189 (1dabA)N525 because D (zeta) conformation "forbidden" or filtered. T0547 186 :LHS 1dabA 522 :LAA T0547 190 :GVGIW 1dabA 526 :GNGQW Number of specific fragments extracted= 2 number of extra gaps= 1 total=34419 # 1pg6A.186.96 read from T0547.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)G190 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 186 :LHSA 1pg6A 90 :PNTP T0547 191 :VGIW 1pg6A 95 :QIVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34421 # 1q2lA.186.259 read from T0547.t2k.many.frag # found chain 1q2lA in template set T0547 186 :LHSAGVGIW 1q2lA 283 :PALPRKVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=34422 # 1xmtA.186.29 read from T0547.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)S188 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. T0547 186 :LH 1xmtA 30 :MR T0547 190 :GVGIW 1xmtA 34 :GKVMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=34424 # 1knwA.186.144 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A189 (1knwA)G148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1knwA)H149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1knwA)H151 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :LHS 1knwA 145 :PGF T0547 191 :V 1knwA 150 :G T0547 193 :IW 1knwA 152 :SQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=34427 # 1wv8A.186.9 read from T0547.t2k.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)G190 (1wv8A)A14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1wv8A)G15 because L (left) conformation "forbidden" or filtered. T0547 186 :LHSA 1wv8A 10 :WDGE T0547 192 :GIW 1wv8A 16 :VWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34429 2czrA expands to /projects/compbio/data/pdb/2czr.pdb.gz 2czrA:# 2czrA.186.31 read from T0547.t2k.many.frag # adding 2czrA to template set # found chain 2czrA in template set Warning: unaligning (T0547)A189 (2czrA)E27 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (2czrA)T30 because E (beta_S) conformation "forbidden" or filtered. T0547 186 :LHS 2czrA 24 :WEI T0547 190 :GV 2czrA 28 :GS T0547 193 :IW 2czrA 31 :IT Number of specific fragments extracted= 3 number of extra gaps= 2 total=34432 # 1vzyA.186.67 read from T0547.t2k.many.frag # found chain 1vzyA in template set Warning: unaligning (T0547)H187 (1vzyA)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1vzyA)G73 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1vzyA)A74 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :L 1vzyA 68 :G T0547 188 :SAG 1vzyA 70 :GPI T0547 193 :IW 1vzyA 75 :IV Number of specific fragments extracted= 3 number of extra gaps= 2 total=34435 # 2fokA.186.455 read from T0547.t2k.many.frag # found chain 2fokA in template set T0547 186 :LHSAGVGIW 2fokA 456 :VGSPIDYGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34436 # 1k2xA.186.86 read from T0547.t2k.many.frag # found chain 1k2xA in training set T0547 186 :LHSAGVGIW 1k2xA 88 :DGNTLKAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34437 # 2c27A.186.68 read from T0547.t2k.many.frag # found chain 2c27A in template set Warning: unaligning (T0547)A189 (2c27A)G72 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2c27A)A73 because G (3-10) conformation "forbidden" or filtered. T0547 186 :LHS 2c27A 69 :PPR T0547 191 :VGIW 2c27A 74 :GGAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=34439 # 1unnC.186.55 read from T0547.t2k.many.frag # found chain 1unnC in template set Warning: unaligning (T0547)G190 (1unnC)Q296 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1unnC)T298 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE in next template residue (1unnC)E301 T0547 186 :LHSA 1unnC 292 :FDDF T0547 191 :V 1unnC 297 :Q T0547 193 :I 1unnC 299 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=34442 1ysjA expands to /projects/compbio/data/pdb/1ysj.pdb.gz 1ysjA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 282, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 284, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 286, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 288, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 290, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 292, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 294, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 296, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 298, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 300, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 302, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 304, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 306, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 310, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 318, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 320, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 322, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 324, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 695, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 697, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 699, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 701, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 703, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 705, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 707, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 709, because occupancy 0.500 <= existing 0.500 in 1ysjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1676, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1678, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1680, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1682, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1684, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1686, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1688, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1690, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1692, because occupancy 0.500 <= existing 0.500 in 1ysjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1898, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1900, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1902, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1904, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1906, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1908, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1910, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1912, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1914, because occupancy 0.500 <= existing 0.500 in 1ysjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2167, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2169, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2171, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2173, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2175, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2177, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2179, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2181, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2183, because occupancy 0.500 <= existing 0.500 in 1ysjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ysjA.186.184 read from T0547.t2k.many.frag # adding 1ysjA to template set # found chain 1ysjA in template set Warning: unaligning (T0547)V191 (1ysjA)G166 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1ysjA)T167 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1ysjA)G169 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :LHSAG 1ysjA 161 :PDLPV T0547 193 :I 1ysjA 168 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=34444 # 1mpgA.187.52 read from T0547.t2k.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)V191 (1mpgA)H57 because L (left) conformation "forbidden" or filtered. T0547 187 :HSAG 1mpgA 53 :DIAR T0547 192 :GIWA 1mpgA 58 :TLHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=34446 # 1fjgS.187.53 read from T0547.t2k.many.frag # found chain 1fjgS in template set Warning: unaligning (T0547)G192 (1fjgS)P59 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSAGV 1fjgS 54 :GKQHV T0547 193 :IWA 1fjgS 60 :VYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=34448 # 2c3vA.187.18 read from T0547.t2k.many.frag # found chain 2c3vA in training set Warning: unaligning (T0547)G190 (2c3vA)H99 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (2c3vA)Y104 because Y (epsilon') conformation "forbidden" or filtered. T0547 187 :HSA 2c3vA 96 :GWT T0547 191 :VGIW 2c3vA 100 :PHIH Number of specific fragments extracted= 2 number of extra gaps= 2 total=34450 # 1q3iA.187.112 read from T0547.t2k.many.frag # found chain 1q3iA in template set T0547 187 :HSAGVGIWA 1q3iA 490 :DNPQSHVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34451 # 1eokA.187.17 read from T0547.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0547)W194 (1eokA)K25 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSAGVGI 1eokA 18 :DGRNPTF T0547 195 :A 1eokA 26 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=34453 # 1xkrA.187.68 read from T0547.t2k.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)I193 (1xkrA)S74 because Y (epsilon') conformation "forbidden" or filtered. T0547 187 :HSAGVG 1xkrA 68 :TGDIEG T0547 194 :WA 1xkrA 75 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34455 # 1ogdA.187.116 read from T0547.t2k.many.frag # found chain 1ogdA in template set T0547 187 :HSAGVGIWA 1ogdA 117 :FTPYANCIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34456 # 1rwrA.187.129 read from T0547.t2k.many.frag # found chain 1rwrA in training set Warning: unaligning (T0547)A189 (1rwrA)N132 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1rwrA)G133 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1rwrA)R135 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HS 1rwrA 130 :SV T0547 191 :V 1rwrA 134 :G T0547 193 :IWA 1rwrA 136 :IGL Number of specific fragments extracted= 3 number of extra gaps= 2 total=34459 # 1zj8A.187.243 read from T0547.t2k.many.frag # found chain 1zj8A in template set T0547 187 :HSAGVGIWA 1zj8A 233 :PEHGPGLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34460 # 2f1fA.187.39 read from T0547.t2k.many.frag # found chain 2f1fA in training set Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE in next template residue (2f1fA)D40 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)D40 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE in next template residue (2f1fA)T42 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)T42 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)L43 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)S44 T0547 193 :IWA 2f1fA 45 :RMT Number of specific fragments extracted= 1 number of extra gaps= 1 total=34461 # 1wv8A.187.10 read from T0547.t2k.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)V191 (1wv8A)G15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1wv8A)V16 because Y (epsilon') conformation "forbidden" or filtered. T0547 187 :HSAG 1wv8A 11 :DGEA T0547 193 :IWA 1wv8A 17 :WVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34463 # 1ae9A.187.57 read from T0547.t2k.many.frag # found chain 1ae9A in template set Warning: unaligning (T0547)A195 (1ae9A)I242 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSAGVGIW 1ae9A 234 :SKTGVKIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=34464 # 1o12A.187.166 read from T0547.t2k.many.frag # found chain 1o12A in template set Warning: unaligning (T0547)S188 (1o12A)I156 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1o12A)E157 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :H 1o12A 155 :E T0547 190 :GVGIWA 1o12A 158 :SSELLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34466 # 1euvA.187.110 read from T0547.t2k.many.frag # found chain 1euvA in training set Warning: unaligning (T0547)H187 (1euvA)N511 because L (left) conformation "forbidden" or filtered. T0547 188 :SAGVGIWA 1euvA 512 :QSHWALGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=34467 # 1vzyA.187.68 read from T0547.t2k.many.frag # found chain 1vzyA in template set Warning: unaligning (T0547)H187 (1vzyA)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1vzyA)A74 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SAGV 1vzyA 70 :GPIG T0547 193 :IWA 1vzyA 75 :IVA Number of specific fragments extracted= 2 number of extra gaps= 2 total=34469 # 1kv7A.187.66 read from T0547.t2k.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)G190 (1kv7A)T98 because Y (epsilon') conformation "forbidden" or filtered. T0547 187 :HSA 1kv7A 95 :TEE T0547 191 :VGIWA 1kv7A 99 :TLHWH Number of specific fragments extracted= 2 number of extra gaps= 1 total=34471 # 1lfdA.187.10 read from T0547.t2k.many.frag # found chain 1lfdA in template set Warning: unaligning (T0547)G192 (1lfdA)N29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1lfdA)Y31 because Y (epsilon') conformation "forbidden" or filtered. T0547 187 :HSAGV 1lfdA 24 :DVDNG T0547 193 :I 1lfdA 30 :M T0547 195 :A 1lfdA 32 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=34474 1q67A expands to /projects/compbio/data/pdb/1q67.pdb.gz 1q67A:# 1q67A.187.146 read from T0547.t2k.many.frag # adding 1q67A to template set # found chain 1q67A in template set Warning: unaligning (T0547)G190 (1q67A)P150 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1q67A)N152 because E (beta_S) conformation "forbidden" or filtered. T0547 187 :HSA 1q67A 147 :RIN T0547 191 :V 1q67A 151 :D T0547 193 :IWA 1q67A 153 :FSM Number of specific fragments extracted= 3 number of extra gaps= 2 total=34477 # 1pg6A.187.97 read from T0547.t2k.many.frag # found chain 1pg6A in training set T0547 187 :HSAGVGIWA 1pg6A 91 :NTPGQIVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34478 # 1hjrA.187.8 read from T0547.t2k.many.frag # found chain 1hjrA in template set T0547 187 :HSAGVGIWA 1hjrA 9 :GSRVTGYGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34479 # 2czrA.187.32 read from T0547.t2k.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)A189 (2czrA)E27 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (2czrA)T30 because E (beta_S) conformation "forbidden" or filtered. T0547 187 :HS 2czrA 25 :EI T0547 190 :GV 2czrA 28 :GS T0547 193 :IWA 2czrA 31 :ITG Number of specific fragments extracted= 3 number of extra gaps= 2 total=34482 1hqz1 expands to /projects/compbio/data/pdb/1hqz.pdb.gz 1hqz1:# 1hqz1.187.37 read from T0547.t2k.many.frag # adding 1hqz1 to template set # found chain 1hqz1 in template set Warning: unaligning (T0547)A189 (1hqz1)K40 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1hqz1)Y43 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HS 1hqz1 38 :NA T0547 190 :GV 1hqz1 41 :KE T0547 193 :IWA 1hqz1 44 :EPE Number of specific fragments extracted= 3 number of extra gaps= 2 total=34485 # 1c93A.187.45 read from T0547.t2k.many.frag # found chain 1c93A in template set Warning: unaligning (T0547)G190 (1c93A)T54 because G (3-10) conformation "forbidden" or filtered. T0547 187 :HSA 1c93A 51 :DTG T0547 191 :VGIWA 1c93A 55 :KTAYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34487 # 1xmtA.187.30 read from T0547.t2k.many.frag # found chain 1xmtA in training set T0547 187 :HSAGVGIWA 1xmtA 31 :RNNGKVMDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34488 1mzbA expands to /projects/compbio/data/pdb/1mzb.pdb.gz 1mzbA:# 1mzbA.187.74 read from T0547.t2k.many.frag # adding 1mzbA to template set # found chain 1mzbA in template set Warning: unaligning (T0547)H187 (1mzbA)D73 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1mzbA)G75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1mzbA)V78 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :S 1mzbA 74 :G T0547 190 :GV 1mzbA 76 :HA T0547 193 :IWA 1mzbA 79 :FEL Number of specific fragments extracted= 3 number of extra gaps= 3 total=34491 1xzwA expands to /projects/compbio/data/pdb/1xzw.pdb.gz 1xzwA:# 1xzwA.187.106 read from T0547.t2k.many.frag # adding 1xzwA to template set # found chain 1xzwA in template set Warning: unaligning (T0547)H187 (1xzwA)G107 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1xzwA)F115 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SAGVGIW 1xzwA 108 :DAKRQFW Number of specific fragments extracted= 1 number of extra gaps= 2 total=34492 1zxmA expands to /projects/compbio/data/pdb/1zxm.pdb.gz 1zxmA:# 1zxmA.187.81 read from T0547.t2k.many.frag # adding 1zxmA to template set # found chain 1zxmA in template set Warning: unaligning (T0547)G190 (1zxmA)N113 because G (3-10) conformation "forbidden" or filtered. T0547 187 :HSA 1zxmA 110 :DPE T0547 191 :VGIWA 1zxmA 114 :NLISI Number of specific fragments extracted= 2 number of extra gaps= 1 total=34494 # 1ysjA.187.185 read from T0547.t2k.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)V191 (1ysjA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 187 :HSAG 1ysjA 162 :DLPV T0547 192 :GIWA 1ysjA 167 :TIGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34496 # 1n4wA.187.376 read from T0547.t2k.many.frag # found chain 1n4wA in training set T0547 187 :HSAGVGIWA 1n4wA 382 :NPQRGTFVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=34497 # 2pth.187.95 read from T0547.t2k.many.frag # found chain 2pth in training set Warning: unaligning (T0547)G190 (2pth)P99 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSA 2pth 96 :DLP T0547 191 :VGIWA 2pth 100 :GVAKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=34499 # 1mpgA.188.53 read from T0547.t2k.many.frag # found chain 1mpgA in training set T0547 188 :SAGVGIWAK 1mpgA 54 :IARHTLHIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=34500 # 1xkrA.188.69 read from T0547.t2k.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)G192 (1xkrA)G73 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SAGV 1xkrA 69 :GDIE T0547 193 :IWAK 1xkrA 74 :SVLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34502 # 1q3iA.188.113 read from T0547.t2k.many.frag # found chain 1q3iA in template set T0547 188 :SAGVGIWAK 1q3iA 492 :NPQSHVLVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=34503 # 1fjgS.188.54 read from T0547.t2k.many.frag # found chain 1fjgS in template set T0547 188 :SAGVGIWAK 1fjgS 55 :KQHVPVYIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34504 # 1ogdA.188.117 read from T0547.t2k.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)G192 (1ogdA)N122 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :SAGV 1ogdA 118 :TPYA T0547 193 :IWAK 1ogdA 123 :CILQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=34506 # 1wv8A.188.11 read from T0547.t2k.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)V191 (1wv8A)G15 because L (left) conformation "forbidden" or filtered. T0547 188 :SAG 1wv8A 12 :GEA T0547 192 :GIWAK 1wv8A 16 :VWVAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34508 # 1rwrA.188.130 read from T0547.t2k.many.frag # found chain 1rwrA in training set Warning: unaligning (T0547)A189 (1rwrA)N132 because D (zeta) conformation "forbidden" or filtered. T0547 188 :S 1rwrA 131 :V T0547 190 :GVGIWAK 1rwrA 133 :GGRIGLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=34510 # 1q67A.188.147 read from T0547.t2k.many.frag # found chain 1q67A in template set Warning: unaligning (T0547)G190 (1q67A)P150 because G (3-10) conformation "forbidden" or filtered. T0547 188 :SA 1q67A 148 :IN T0547 191 :VGIWAK 1q67A 151 :DNFSMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=34512 # 2c3vA.188.19 read from T0547.t2k.many.frag # found chain 2c3vA in training set Warning: unaligning (T0547)G190 (2c3vA)H99 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (2c3vA)Y104 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SA 2c3vA 97 :WT T0547 191 :VGIW 2c3vA 100 :PHIH T0547 196 :K 2c3vA 105 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=34515 # 1hqz1.188.38 read from T0547.t2k.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)I193 (1hqz1)E44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SAGVG 1hqz1 39 :AKKEY T0547 194 :WA 1hqz1 45 :PE Number of specific fragments extracted= 2 number of extra gaps= 2 total=34517 # 1pg6A.188.98 read from T0547.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)G192 (1pg6A)I96 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :SAGV 1pg6A 92 :TPGQ T0547 193 :IWAK 1pg6A 97 :VALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34519 1pjhA expands to /projects/compbio/data/pdb/1pjh.pdb.gz 1pjhA:# 1pjhA.188.14 read from T0547.t2k.many.frag # adding 1pjhA to template set # found chain 1pjhA in template set Warning: unaligning (T0547)A189 (1pjhA)E16 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1pjhA)G17 because S (epsilon) conformation "forbidden" or filtered. T0547 188 :S 1pjhA 15 :I T0547 191 :VGIWAK 1pjhA 18 :PFFIIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=34521 # 1zd0A.188.96 read from T0547.t2k.many.frag # found chain 1zd0A in training set Warning: unaligning (T0547)G190 (1zd0A)E98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1zd0A)E100 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1zd0A)V104 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :SA 1zd0A 96 :AK T0547 191 :V 1zd0A 99 :G T0547 193 :IWA 1zd0A 101 :NYI Number of specific fragments extracted= 3 number of extra gaps= 3 total=34524 # 2czrA.188.33 read from T0547.t2k.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)A189 (2czrA)E27 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2czrA)G28 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (2czrA)T30 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :S 2czrA 26 :I T0547 191 :V 2czrA 29 :S T0547 193 :IWAK 2czrA 31 :ITGI Number of specific fragments extracted= 3 number of extra gaps= 2 total=34527 # 1ae9A.188.58 read from T0547.t2k.many.frag # found chain 1ae9A in template set T0547 188 :SAGVGIWAK 1ae9A 235 :KTGVKIAIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34528 # 1t0fA.188.42 read from T0547.t2k.many.frag # found chain 1t0fA in template set T0547 188 :SAGVGIWAK 1t0fA 40 :SSGRSHRIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=34529 # 1eokA.188.18 read from T0547.t2k.many.frag # found chain 1eokA in training set T0547 188 :SAGVGIWAK 1eokA 19 :GRNPTFKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34530 # 1xzwA.188.107 read from T0547.t2k.many.frag # found chain 1xzwA in template set Warning: unaligning (T0547)G190 (1xzwA)K110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1xzwA)F115 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SA 1xzwA 108 :DA T0547 191 :VGIW 1xzwA 111 :RQFW T0547 196 :K 1xzwA 116 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=34533 # 2f1fA.188.40 read from T0547.t2k.many.frag # found chain 2f1fA in training set Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)D40 Warning: unaligning (T0547)A189 because of BadResidue code BAD_PEPTIDE in next template residue (2f1fA)T42 Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)T42 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)L43 Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE at template residue (2f1fA)S44 T0547 193 :IWAK 2f1fA 45 :RMTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=34534 # 1zkoA.188.104 read from T0547.t2k.many.frag # found chain 1zkoA in training set Warning: unaligning (T0547)G190 (1zkoA)G95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (1zkoA)F98 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1zkoA)E101 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SA 1zkoA 93 :GE T0547 191 :VG 1zkoA 96 :WL T0547 194 :WA 1zkoA 99 :KM Number of specific fragments extracted= 3 number of extra gaps= 3 total=34537 # 1lugA.188.70 read from T0547.t2k.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)S188 (1lugA)D72 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1lugA)Q74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE in next template residue (1lugA)A77 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE at template residue (1lugA)A77 Warning: unaligning (T0547)A195 (1lugA)L79 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1lugA)K80 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :A 1lugA 73 :S T0547 191 :V 1lugA 75 :D T0547 194 :W 1lugA 78 :V Number of specific fragments extracted= 3 number of extra gaps= 4 total=34540 # 2pth.188.96 read from T0547.t2k.many.frag # found chain 2pth in training set T0547 188 :SAGVGIWAK 2pth 97 :LPPGVAKFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34541 # 1h16A.188.549 read from T0547.t2k.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)G192 (1h16A)A554 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1h16A)D556 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SAGV 1h16A 550 :EDGL T0547 193 :I 1h16A 555 :I T0547 195 :AK 1h16A 557 :FE Number of specific fragments extracted= 3 number of extra gaps= 2 total=34544 # 2ae0X.188.113 read from T0547.t2k.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)G192 (2ae0X)Y118 because D (zeta) conformation "forbidden" or filtered. T0547 188 :SAGV 2ae0X 114 :GEFQ T0547 193 :IWAK 2ae0X 119 :PIYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=34546 # 1zj8A.188.244 read from T0547.t2k.many.frag # found chain 1zj8A in template set Warning: unaligning (T0547)A195 (1zj8A)L241 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SAGVGIW 1zj8A 234 :EHGPGLD T0547 196 :K 1zj8A 242 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=34548 # 1wd3A.188.38 read from T0547.t2k.many.frag # found chain 1wd3A in training set T0547 188 :SAGVGIWAK 1wd3A 56 :SDDTTTTIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34549 # 2c27A.188.70 read from T0547.t2k.many.frag # found chain 2c27A in template set Warning: unaligning (T0547)A189 (2c27A)G72 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (2c27A)G75 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :S 2c27A 71 :R T0547 190 :GV 2c27A 73 :AG T0547 193 :IWAK 2c27A 76 :AMAE Number of specific fragments extracted= 3 number of extra gaps= 2 total=34552 # 1kv7A.188.67 read from T0547.t2k.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)G190 (1kv7A)T98 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1kv7A)G104 because T (delta_L) conformation "forbidden" or filtered. T0547 188 :SA 1kv7A 96 :EE T0547 191 :VGIWA 1kv7A 99 :TLHWH Number of specific fragments extracted= 2 number of extra gaps= 2 total=34554 # 1vzyA.188.69 read from T0547.t2k.many.frag # found chain 1vzyA in template set Warning: unaligning (T0547)V191 (1vzyA)G73 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1vzyA)A74 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SAG 1vzyA 70 :GPI T0547 193 :IWAK 1vzyA 75 :IVAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=34556 # 1vqoN.188.53 read from T0547.t2k.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)W194 (1vqoN)A59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1vqoN)S60 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SAGVGI 1vqoN 53 :NGDDTL T0547 196 :K 1vqoN 61 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=34558 # 1mpgA.189.54 read from T0547.t2k.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)G190 (1mpgA)R56 because G (3-10) conformation "forbidden" or filtered. T0547 189 :A 1mpgA 55 :A T0547 191 :VGIWAKS 1mpgA 57 :HTLHINL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34560 # 1pjhA.189.15 read from T0547.t2k.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)A189 (1pjhA)E16 because D (zeta) conformation "forbidden" or filtered. T0547 190 :GVGIWAKS 1pjhA 17 :GPFFIIHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=34561 # 1t0fA.189.43 read from T0547.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)G190 (1t0fA)G42 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :A 1t0fA 41 :S T0547 191 :VGIWAKS 1t0fA 43 :RSHRIYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=34563 # 1xkrA.189.70 read from T0547.t2k.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)G190 (1xkrA)I71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (1xkrA)S74 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :A 1xkrA 70 :D T0547 191 :VG 1xkrA 72 :EG T0547 194 :WAKS 1xkrA 75 :VLLI Number of specific fragments extracted= 3 number of extra gaps= 2 total=34566 # 1fjgS.189.55 read from T0547.t2k.many.frag # found chain 1fjgS in template set Warning: unaligning (T0547)A189 (1fjgS)Q56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1fjgS)P59 because P (beta_P) conformation "forbidden" or filtered. T0547 190 :GV 1fjgS 57 :HV T0547 193 :IWAKS 1fjgS 60 :VYITE Number of specific fragments extracted= 2 number of extra gaps= 2 total=34568 # 1zd0A.189.97 read from T0547.t2k.many.frag # found chain 1zd0A in training set Warning: unaligning (T0547)V191 (1zd0A)G99 because S (epsilon) conformation "forbidden" or filtered. T0547 189 :AG 1zd0A 97 :KE T0547 192 :GIWAKS 1zd0A 100 :ENYIVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=34570 # 2ae0X.189.114 read from T0547.t2k.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)G190 (2ae0X)F116 because N (gamma') conformation "forbidden" or filtered. T0547 189 :A 2ae0X 115 :E T0547 191 :VGIWAKS 2ae0X 117 :QYPIYRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=34572 # 1pg6A.189.99 read from T0547.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)A195 (1pg6A)L99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1pg6A)E100 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :AGVGIW 1pg6A 93 :PGQIVA T0547 197 :S 1pg6A 101 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=34574 # 1hqz1.189.39 read from T0547.t2k.many.frag # found chain 1hqz1 in template set T0547 189 :AGVGIWAKS 1hqz1 40 :KKEYEPEST Number of specific fragments extracted= 1 number of extra gaps= 0 total=34575 # 1q3iA.189.114 read from T0547.t2k.many.frag # found chain 1q3iA in template set Warning: unaligning (T0547)G192 (1q3iA)H496 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1q3iA)K501 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :AGV 1q3iA 493 :PQS T0547 193 :IWAK 1q3iA 497 :VLVM Number of specific fragments extracted= 2 number of extra gaps= 2 total=34577 # 1zkoA.189.105 read from T0547.t2k.many.frag # found chain 1zkoA in training set Warning: unaligning (T0547)S197 (1zkoA)I102 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :AGVGIWAK 1zkoA 94 :EGWLFKME Number of specific fragments extracted= 1 number of extra gaps= 1 total=34578 # 1lugA.189.71 read from T0547.t2k.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)A189 (1lugA)S73 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE in next template residue (1lugA)A77 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE at template residue (1lugA)A77 T0547 190 :GV 1lugA 74 :QD T0547 194 :WAKS 1lugA 78 :VLKG Number of specific fragments extracted= 2 number of extra gaps= 2 total=34580 # 1ogdA.189.118 read from T0547.t2k.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)A195 (1ogdA)L125 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1ogdA)Q126 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :AGVGIW 1ogdA 119 :PYANCI T0547 197 :S 1ogdA 127 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=34582 # 1xzwA.189.108 read from T0547.t2k.many.frag # found chain 1xzwA in template set Warning: unaligning (T0547)A195 (1xzwA)F115 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :AGVGIW 1xzwA 109 :AKRQFW T0547 196 :KS 1xzwA 116 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=34584 # 1o97D.189.123 read from T0547.t2k.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)A189 (1o97D)Q124 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1o97D)T131 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1o97D)R132 because Y (epsilon') conformation "forbidden" or filtered. T0547 190 :GVGIWA 1o97D 125 :GDELVA Number of specific fragments extracted= 1 number of extra gaps= 2 total=34585 # 1wv8A.189.12 read from T0547.t2k.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)G190 (1wv8A)A14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1wv8A)G15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1wv8A)A19 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :A 1wv8A 13 :E T0547 192 :GIW 1wv8A 16 :VWV T0547 196 :KS 1wv8A 20 :ES Number of specific fragments extracted= 3 number of extra gaps= 2 total=34588 # 1q67A.189.148 read from T0547.t2k.many.frag # found chain 1q67A in template set Warning: unaligning (T0547)A189 (1q67A)N149 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1q67A)P150 because G (3-10) conformation "forbidden" or filtered. T0547 191 :VGIWAKS 1q67A 151 :DNFSMGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=34589 # 1h16A.189.550 read from T0547.t2k.many.frag # found chain 1h16A in training set T0547 189 :AGVGIWAKS 1h16A 551 :DGLAIDFEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34590 # 1ae9A.189.59 read from T0547.t2k.many.frag # found chain 1ae9A in template set T0547 189 :AGVGIWAKS 1ae9A 236 :TGVKIAIPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34591 # 1xd3A.189.164 read from T0547.t2k.many.frag # found chain 1xd3A in training set Warning: unaligning (T0547)G190 (1xd3A)V166 because E (beta_S) conformation "forbidden" or filtered. T0547 189 :A 1xd3A 165 :K T0547 191 :VGIWAKS 1xd3A 167 :DLHFIAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34593 # 2c27A.189.71 read from T0547.t2k.many.frag # found chain 2c27A in template set Warning: unaligning (T0547)A189 (2c27A)G72 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2c27A)A73 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (2c27A)G75 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (2c27A)L80 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :V 2c27A 74 :G T0547 193 :IWAK 2c27A 76 :AMAE Number of specific fragments extracted= 2 number of extra gaps= 3 total=34595 # 1wd3A.189.39 read from T0547.t2k.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)I193 (1wd3A)T61 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :AGVG 1wd3A 57 :DDTT T0547 194 :WAKS 1wd3A 62 :TISP Number of specific fragments extracted= 2 number of extra gaps= 1 total=34597 2d9rA expands to /projects/compbio/data/pdb/2d9r.pdb.gz 2d9rA:Skipped atom 84, because occupancy 0.500 <= existing 0.500 in 2d9rA Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 2d9rA Skipped atom 90, because occupancy 0.500 <= existing 0.500 in 2d9rA Skipped atom 92, because occupancy 0.500 <= existing 0.500 in 2d9rA Skipped atom 94, because occupancy 0.500 <= existing 0.500 in 2d9rA Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 2d9rA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2d9rA.189.62 read from T0547.t2k.many.frag # adding 2d9rA to template set # found chain 2d9rA in template set Warning: unaligning (T0547)G190 (2d9rA)P64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (2d9rA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)I69 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)I69 T0547 189 :A 2d9rA 63 :Y T0547 191 :VG 2d9rA 65 :YT T0547 196 :KS 2d9rA 70 :VR Number of specific fragments extracted= 3 number of extra gaps= 2 total=34600 # 2czrA.189.34 read from T0547.t2k.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)A189 (2czrA)E27 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (2czrA)T30 because E (beta_S) conformation "forbidden" or filtered. T0547 190 :GV 2czrA 28 :GS T0547 193 :IWAKS 2czrA 31 :ITGIH Number of specific fragments extracted= 2 number of extra gaps= 2 total=34602 # 1kv7A.189.105 read from T0547.t2k.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)G190 (1kv7A)A135 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1kv7A)T137 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1kv7A)P142 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :A 1kv7A 134 :P T0547 191 :V 1kv7A 136 :A T0547 193 :IWAK 1kv7A 138 :CWFH Number of specific fragments extracted= 3 number of extra gaps= 3 total=34605 # 1vqoN.189.54 read from T0547.t2k.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)G190 (1vqoN)D55 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1vqoN)T57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1vqoN)A59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1vqoN)S60 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :A 1vqoN 54 :G T0547 191 :V 1vqoN 56 :D T0547 193 :I 1vqoN 58 :L T0547 196 :KS 1vqoN 61 :AH Number of specific fragments extracted= 4 number of extra gaps= 3 total=34609 # 1rwrA.189.131 read from T0547.t2k.many.frag # found chain 1rwrA in training set Warning: unaligning (T0547)A189 (1rwrA)N132 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1rwrA)G133 because S (epsilon) conformation "forbidden" or filtered. T0547 191 :VGIWAKS 1rwrA 134 :GRIGLDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=34610 # 1n4wA.189.378 read from T0547.t2k.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)G192 (1n4wA)T387 because E (beta_S) conformation "forbidden" or filtered. T0547 189 :AGV 1n4wA 384 :QRG T0547 193 :IWAKS 1n4wA 388 :FVYDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34612 # 1azo.189.91 read from T0547.t2k.many.frag # found chain 1azo in training set Warning: unaligning (T0547)G192 (1azo)T92 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :AGV 1azo 89 :PLE T0547 193 :IWAKS 1azo 93 :TFVCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34614 # 1q52A.189.93 read from T0547.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)V191 (1q52A)D96 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE in next template residue (1q52A)F101 Warning: unaligning (T0547)K196 because of BadResidue code BAD_PEPTIDE at template residue (1q52A)F101 T0547 189 :AG 1q52A 94 :PK T0547 192 :GIW 1q52A 97 :GGW T0547 197 :S 1q52A 102 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=34617 # 1mpgA.190.55 read from T0547.t2k.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)V191 (1mpgA)H57 because L (left) conformation "forbidden" or filtered. T0547 190 :G 1mpgA 56 :R T0547 192 :GIWAKSG 1mpgA 58 :TLHINLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=34619 # 1t0fA.190.44 read from T0547.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)G192 (1t0fA)S44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1t0fA)I47 because E (beta_S) conformation "forbidden" or filtered. T0547 190 :GV 1t0fA 42 :GR T0547 193 :IW 1t0fA 45 :HR T0547 196 :KSG 1t0fA 48 :YSH Number of specific fragments extracted= 3 number of extra gaps= 2 total=34622 # 1pjhA.190.16 read from T0547.t2k.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)G190 (1pjhA)G17 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1pjhA)F19 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :V 1pjhA 18 :P T0547 193 :IWAKSG 1pjhA 20 :FIIHLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=34624 # 1fjgS.190.56 read from T0547.t2k.many.frag # found chain 1fjgS in template set Warning: unaligning (T0547)G198 (1fjgS)N65 because G (3-10) conformation "forbidden" or filtered. T0547 190 :GVGIWAKS 1fjgS 57 :HVPVYITE Number of specific fragments extracted= 1 number of extra gaps= 1 total=34625 # 1zd0A.190.98 read from T0547.t2k.many.frag # found chain 1zd0A in training set Warning: unaligning (T0547)G190 (1zd0A)E98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1zd0A)E100 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 1zd0A 99 :G T0547 193 :IWAKSG 1zd0A 101 :NYIVTF Number of specific fragments extracted= 2 number of extra gaps= 2 total=34627 # 2ae0X.190.115 read from T0547.t2k.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)G190 (2ae0X)F116 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (2ae0X)P124 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWAKS 2ae0X 117 :QYPIYRM Number of specific fragments extracted= 1 number of extra gaps= 2 total=34628 # 1o97D.190.124 read from T0547.t2k.many.frag # found chain 1o97D in training set T0547 190 :GVGIWAKSG 1o97D 125 :GDELVATRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34629 # 2d9rA.190.63 read from T0547.t2k.many.frag # found chain 2d9rA in template set Warning: unaligning (T0547)G192 (2d9rA)T66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)I69 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)I69 T0547 190 :GV 2d9rA 64 :PY T0547 193 :I 2d9rA 67 :G T0547 196 :KSG 2d9rA 70 :VRM Number of specific fragments extracted= 3 number of extra gaps= 2 total=34632 # 1xzwA.190.109 read from T0547.t2k.many.frag # found chain 1xzwA in template set Warning: unaligning (T0547)A195 (1xzwA)F115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1xzwA)P118 because P (beta_P) conformation "forbidden" or filtered. T0547 190 :GVGIW 1xzwA 110 :KRQFW T0547 196 :KS 1xzwA 116 :VT Number of specific fragments extracted= 2 number of extra gaps= 2 total=34634 # 1hqz1.190.40 read from T0547.t2k.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)G192 (1hqz1)Y43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1hqz1)P45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 190 :GV 1hqz1 41 :KE T0547 193 :I 1hqz1 44 :E T0547 195 :A 1hqz1 46 :E T0547 197 :SG 1hqz1 48 :TG Number of specific fragments extracted= 4 number of extra gaps= 3 total=34638 # 1pg6A.190.100 read from T0547.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)K196 (1pg6A)E100 because P (beta_P) conformation "forbidden" or filtered. T0547 190 :GVGIWA 1pg6A 94 :GQIVAL T0547 197 :SG 1pg6A 101 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=34640 # 1lugA.190.72 read from T0547.t2k.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE in next template residue (1lugA)A77 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE at template residue (1lugA)A77 T0547 190 :GV 1lugA 74 :QD T0547 194 :WAKSG 1lugA 78 :VLKGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=34642 # 1wd3A.190.40 read from T0547.t2k.many.frag # found chain 1wd3A in training set T0547 190 :GVGIWAKSG 1wd3A 58 :DTTTTISPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34643 # 1kv7A.190.106 read from T0547.t2k.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)K196 (1kv7A)H141 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1kv7A)H143 because G (3-10) conformation "forbidden" or filtered. T0547 190 :GVGIWA 1kv7A 135 :AATCWF T0547 197 :S 1kv7A 142 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=34645 # 1xd3A.190.165 read from T0547.t2k.many.frag # found chain 1xd3A in training set T0547 190 :GVGIWAKSG 1xd3A 166 :VDLHFIALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34646 # 1h16A.190.551 read from T0547.t2k.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)W194 (1h16A)D556 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1h16A)E560 because E (beta_S) conformation "forbidden" or filtered. T0547 190 :GVGI 1h16A 552 :GLAI T0547 195 :AKS 1h16A 557 :FEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=34648 # 1vqoN.190.55 read from T0547.t2k.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)G190 (1vqoN)D55 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1vqoN)T57 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 1vqoN 56 :D T0547 193 :IWAKSG 1vqoN 58 :LASAHS Number of specific fragments extracted= 2 number of extra gaps= 2 total=34650 # 1xkrA.190.71 read from T0547.t2k.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)G190 (1xkrA)I71 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :VGIWAKSG 1xkrA 72 :EGSVLLIM Number of specific fragments extracted= 1 number of extra gaps= 1 total=34651 # 1azo.190.92 read from T0547.t2k.many.frag # found chain 1azo in training set T0547 190 :GVGIWAKSG 1azo 90 :LETTFVCVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34652 # 1ae9A.190.60 read from T0547.t2k.many.frag # found chain 1ae9A in template set T0547 190 :GVGIWAKSG 1ae9A 237 :GVKIAIPTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34653 1e4fT expands to /projects/compbio/data/pdb/1e4f.pdb.gz 1e4fT:# 1e4fT.190.89 read from T0547.t2k.many.frag # adding 1e4fT to template set # found chain 1e4fT in template set Warning: unaligning (T0547)G192 (1e4fT)D92 because E (beta_S) conformation "forbidden" or filtered. T0547 190 :GV 1e4fT 90 :RE T0547 193 :IWAKSG 1e4fT 93 :TVIERD Number of specific fragments extracted= 2 number of extra gaps= 1 total=34655 # 1zkoA.190.106 read from T0547.t2k.many.frag # found chain 1zkoA in training set T0547 190 :GVGIWAKSG 1zkoA 95 :GWLFKMEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34656 # 1wdaA.190.477 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)I193 (1wdaA)E474 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1wdaA)V479 because E (beta_S) conformation "forbidden" or filtered. T0547 190 :GVG 1wdaA 471 :HVD T0547 194 :WAKS 1wdaA 475 :FLSF Number of specific fragments extracted= 2 number of extra gaps= 2 total=34658 # 1n4wA.190.379 read from T0547.t2k.many.frag # found chain 1n4wA in training set T0547 190 :GVGIWAKSG 1n4wA 385 :RGTFVYDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34659 1h7sA expands to /projects/compbio/data/pdb/1h7s.pdb.gz 1h7sA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1h7sA.190.209 read from T0547.t2k.many.frag # adding 1h7sA to template set # found chain 1h7sA in template set Warning: unaligning (T0547)G190 (1h7sA)K210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1h7sA)G218 because G (3-10) conformation "forbidden" or filtered. T0547 191 :V 1h7sA 211 :R T0547 193 :IW 1h7sA 213 :PV T0547 196 :KS 1h7sA 216 :CT Number of specific fragments extracted= 3 number of extra gaps= 4 total=34662 # 1mg4A.190.27 read from T0547.t2k.many.frag # found chain 1mg4A in training set Warning: unaligning (T0547)G190 (1mg4A)F69 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWAKSG 1mg4A 70 :KGIVYAIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=34663 # 1ftrA.190.270 read from T0547.t2k.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)G190 (1ftrA)P271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1ftrA)V273 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1ftrA)I276 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1ftrA)S277 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1ftrA)G279 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :V 1ftrA 272 :G T0547 193 :IW 1ftrA 274 :VK T0547 197 :S 1ftrA 278 :A Number of specific fragments extracted= 3 number of extra gaps= 4 total=34666 # 2c27A.190.72 read from T0547.t2k.many.frag # found chain 2c27A in template set Warning: unaligning (T0547)G190 (2c27A)A73 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (2c27A)L80 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :VGIWAK 2c27A 74 :GGAMAE T0547 198 :G 2c27A 81 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=34668 # 1ogdA.190.119 read from T0547.t2k.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)G192 (1ogdA)N122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (1ogdA)C123 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1ogdA)G128 because P (beta_P) conformation "forbidden" or filtered. T0547 190 :GV 1ogdA 120 :YA T0547 194 :WAKS 1ogdA 124 :ILQA Number of specific fragments extracted= 2 number of extra gaps= 2 total=34670 # 1a12A.190.181 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)G192 (1a12A)D192 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1a12A)L196 because Y (epsilon') conformation "forbidden" or filtered. T0547 190 :GV 1a12A 190 :DG T0547 193 :IWA 1a12A 193 :LYT T0547 197 :SG 1a12A 197 :GC Number of specific fragments extracted= 3 number of extra gaps= 2 total=34673 # 1t0fA.191.45 read from T0547.t2k.many.frag # found chain 1t0fA in template set T0547 191 :VGIWAKSGG 1t0fA 43 :RSHRIYSHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34674 # 1pjhA.191.17 read from T0547.t2k.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)G192 (1pjhA)F19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1pjhA)I25 because G (3-10) conformation "forbidden" or filtered. T0547 191 :V 1pjhA 18 :P T0547 193 :IWAKS 1pjhA 20 :FIIHL T0547 199 :G 1pjhA 26 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=34677 # 1fjgS.191.57 read from T0547.t2k.many.frag # found chain 1fjgS in template set T0547 191 :VGIWAKSGG 1fjgS 58 :VPVYITENM Number of specific fragments extracted= 1 number of extra gaps= 0 total=34678 # 1zd0A.191.99 read from T0547.t2k.many.frag # found chain 1zd0A in training set Warning: unaligning (T0547)G192 (1zd0A)E100 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1zd0A)I103 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1zd0A)F106 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :V 1zd0A 99 :G T0547 193 :IW 1zd0A 101 :NY T0547 196 :KS 1zd0A 104 :VT T0547 199 :G 1zd0A 107 :G Number of specific fragments extracted= 4 number of extra gaps= 3 total=34682 # 1xmtA.191.35 read from T0547.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G199 (1xmtA)V44 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :VGIWAKSG 1xmtA 36 :VMDLVHTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=34683 # 2ae0X.191.116 read from T0547.t2k.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)G199 (2ae0X)P125 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWAKSG 2ae0X 117 :QYPIYRMP Number of specific fragments extracted= 1 number of extra gaps= 1 total=34684 # 1wdaA.191.478 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G192 (1wdaA)D473 because G (3-10) conformation "forbidden" or filtered. T0547 191 :V 1wdaA 472 :V T0547 193 :IWAKSGG 1wdaA 474 :EFLSFVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=34686 # 1o97D.191.125 read from T0547.t2k.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)V191 (1o97D)D126 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1o97D)R132 because Y (epsilon') conformation "forbidden" or filtered. T0547 192 :GIWAK 1o97D 127 :ELVAT T0547 198 :GG 1o97D 133 :GG Number of specific fragments extracted= 2 number of extra gaps= 2 total=34688 # 1azo.191.93 read from T0547.t2k.many.frag # found chain 1azo in training set Warning: unaligning (T0547)G192 (1azo)T92 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1azo)C96 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :V 1azo 91 :E T0547 193 :IWA 1azo 93 :TFV T0547 197 :SGG 1azo 97 :VAP Number of specific fragments extracted= 3 number of extra gaps= 2 total=34691 # 1h16A.191.552 read from T0547.t2k.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)W194 (1h16A)D556 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1h16A)E560 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :VGI 1h16A 553 :LAI T0547 195 :AKS 1h16A 557 :FEI T0547 199 :G 1h16A 561 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=34694 # 2d9rA.191.64 read from T0547.t2k.many.frag # found chain 2d9rA in template set Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)I69 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)I69 Warning: unaligning (T0547)S197 (2d9rA)R71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (2d9rA)G73 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGI 2d9rA 65 :YTG T0547 196 :K 2d9rA 70 :V T0547 198 :G 2d9rA 72 :M Number of specific fragments extracted= 3 number of extra gaps= 3 total=34697 # 1lugA.191.73 read from T0547.t2k.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE in next template residue (1lugA)A77 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE at template residue (1lugA)A77 Warning: unaligning (T0547)K196 (1lugA)K80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1lugA)G82 because S (epsilon) conformation "forbidden" or filtered. T0547 191 :V 1lugA 75 :D T0547 194 :WA 1lugA 78 :VL T0547 197 :S 1lugA 81 :G T0547 199 :G 1lugA 83 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=34701 # 1xzwA.191.110 read from T0547.t2k.many.frag # found chain 1xzwA in template set Warning: unaligning (T0547)I193 (1xzwA)F113 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1xzwA)P118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1xzwA)P119 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VG 1xzwA 111 :RQ T0547 194 :WAKS 1xzwA 114 :WFVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=34703 # 1wd3A.191.41 read from T0547.t2k.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)G199 (1wd3A)T67 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :VGIWAKSG 1wd3A 59 :TTTTISPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=34704 # 1a12A.191.182 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)G192 (1a12A)D192 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1a12A)L196 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1a12A)G197 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1a12A)C198 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 1a12A 191 :G T0547 193 :IWA 1a12A 193 :LYT T0547 199 :G 1a12A 199 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=34707 # 1xd3A.191.166 read from T0547.t2k.many.frag # found chain 1xd3A in training set Warning: unaligning (T0547)G198 (1xd3A)V174 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1xd3A)H175 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :VGIWAKS 1xd3A 167 :DLHFIAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=34708 # 1mpgA.191.56 read from T0547.t2k.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)W194 (1mpgA)H60 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1mpgA)S64 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGI 1mpgA 57 :HTL T0547 195 :AKS 1mpgA 61 :INL T0547 199 :G 1mpgA 65 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=34711 # 1e4fT.191.90 read from T0547.t2k.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)G199 (1e4fT)F99 because G (3-10) conformation "forbidden" or filtered. T0547 191 :VGIWAKSG 1e4fT 91 :EDTVIERD Number of specific fragments extracted= 1 number of extra gaps= 1 total=34712 # 1pg6A.191.101 read from T0547.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)G192 (1pg6A)I96 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1pg6A)E100 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 1pg6A 95 :Q T0547 193 :IWA 1pg6A 97 :VAL T0547 197 :SGG 1pg6A 101 :LGE Number of specific fragments extracted= 3 number of extra gaps= 2 total=34715 # 1hqz1.191.41 read from T0547.t2k.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)G192 (1hqz1)Y43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :V 1hqz1 42 :E T0547 193 :IWA 1hqz1 44 :EPE T0547 197 :SGG 1hqz1 48 :TGS Number of specific fragments extracted= 3 number of extra gaps= 2 total=34718 # 1kv7A.191.107 read from T0547.t2k.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)G192 (1kv7A)T137 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1kv7A)H141 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1kv7A)H143 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1kv7A)Q144 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 1kv7A 136 :A T0547 193 :IWA 1kv7A 138 :CWF T0547 197 :S 1kv7A 142 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=34721 # 1ftrA.191.271 read from T0547.t2k.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)G192 (1ftrA)V273 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1ftrA)S277 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1ftrA)N280 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :V 1ftrA 272 :G T0547 193 :IWA 1ftrA 274 :VKI T0547 197 :SG 1ftrA 278 :AG Number of specific fragments extracted= 3 number of extra gaps= 3 total=34724 # 1vqoN.191.56 read from T0547.t2k.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)G192 (1vqoN)T57 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 1vqoN 56 :D T0547 193 :IWAKSGG 1vqoN 58 :LASAHSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=34726 # 1h7sA.191.210 read from T0547.t2k.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G192 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :V 1h7sA 211 :R T0547 193 :IW 1h7sA 213 :PV T0547 196 :KSGG 1h7sA 216 :CTGG Number of specific fragments extracted= 3 number of extra gaps= 2 total=34729 # 1whsA.191.103 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)V191 (1whsA)G98 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1whsA)S102 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1whsA)Y103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1whsA)T106 because N (gamma') conformation "forbidden" or filtered. T0547 192 :GIW 1whsA 99 :VGF T0547 197 :SG 1whsA 104 :TN Number of specific fragments extracted= 2 number of extra gaps= 3 total=34731 # 1ae9A.191.61 read from T0547.t2k.many.frag # found chain 1ae9A in template set T0547 191 :VGIWAKSGG 1ae9A 238 :VKIAIPTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34732 # 1zkoA.191.107 read from T0547.t2k.many.frag # found chain 1zkoA in training set Warning: unaligning (T0547)K196 (1zkoA)E101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1zkoA)D104 because D (zeta) conformation "forbidden" or filtered. T0547 191 :VGIWA 1zkoA 96 :WLFKM T0547 197 :SG 1zkoA 102 :IS Number of specific fragments extracted= 2 number of extra gaps= 2 total=34734 # 1n4wA.191.380 read from T0547.t2k.many.frag # found chain 1n4wA in training set T0547 191 :VGIWAKSGG 1n4wA 386 :GTFVYDAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34735 # 1mg4A.191.28 read from T0547.t2k.many.frag # found chain 1mg4A in training set Warning: unaligning (T0547)G198 (1mg4A)S77 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :VGIWAKS 1mg4A 70 :KGIVYAI T0547 199 :G 1mg4A 78 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=34737 1xpkC expands to /projects/compbio/data/pdb/1xpk.pdb.gz 1xpkC:Skipped atom 8010, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8012, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8014, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8016, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8018, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8020, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8022, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8024, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8026, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8028, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8030, because occupancy 0.500 <= existing 0.500 in 1xpkC # 1xpkC.191.310 read from T0547.t2k.many.frag # adding 1xpkC to template set # found chain 1xpkC in template set Warning: unaligning (T0547)W194 (1xpkC)Y314 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1xpkC)L318 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1xpkC)V319 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGI 1xpkC 311 :GEF T0547 195 :AKS 1xpkC 315 :SAT Number of specific fragments extracted= 2 number of extra gaps= 2 total=34739 # 1xmtA.192.36 read from T0547.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)K196 (1xmtA)H41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1xmtA)V44 because E (beta_S) conformation "forbidden" or filtered. T0547 192 :GIWA 1xmtA 37 :MDLV T0547 197 :SG 1xmtA 42 :TY T0547 200 :I 1xmtA 45 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=34742 # 1pjhA.192.18 read from T0547.t2k.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)S197 (1pjhA)L24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1pjhA)I25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1pjhA)N26 because D (zeta) conformation "forbidden" or filtered. T0547 192 :GIWAK 1pjhA 19 :FFIIH T0547 200 :I 1pjhA 27 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=34744 # 1wdaA.192.479 read from T0547.t2k.many.frag # found chain 1wdaA in template set T0547 192 :GIWAKSGGI 1wdaA 473 :DEFLSFVPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34745 # 1t0fA.192.46 read from T0547.t2k.many.frag # found chain 1t0fA in template set T0547 192 :GIWAKSGGI 1t0fA 44 :SHRIYSHKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34746 # 2ae0X.192.117 read from T0547.t2k.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)G192 (2ae0X)Y118 because D (zeta) conformation "forbidden" or filtered. T0547 193 :IWAKSGGI 2ae0X 119 :PIYRMPPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=34747 # 1azo.192.94 read from T0547.t2k.many.frag # found chain 1azo in training set Warning: unaligning (T0547)K196 (1azo)C96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1azo)P99 because N (gamma') conformation "forbidden" or filtered. T0547 192 :GIWA 1azo 92 :TTFV T0547 197 :SG 1azo 97 :VA T0547 200 :I 1azo 100 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=34750 # 1zd0A.192.100 read from T0547.t2k.many.frag # found chain 1zd0A in training set Warning: unaligning (T0547)G192 (1zd0A)E100 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWAKSGGI 1zd0A 101 :NYIVTFGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=34751 # 1h16A.192.553 read from T0547.t2k.many.frag # found chain 1h16A in training set T0547 192 :GIWAKSGGI 1h16A 554 :AIDFEIEGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34752 # 1fjgS.192.58 read from T0547.t2k.many.frag # found chain 1fjgS in template set Warning: unaligning (T0547)G192 (1fjgS)P59 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1fjgS)M66 because G (3-10) conformation "forbidden" or filtered. T0547 193 :IWAKSG 1fjgS 60 :VYITEN T0547 200 :I 1fjgS 67 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=34754 # 1o97D.192.126 read from T0547.t2k.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)G192 (1o97D)E127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1o97D)R132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1o97D)Y135 because L (left) conformation "forbidden" or filtered. T0547 193 :IWAK 1o97D 128 :LVAT T0547 198 :GG 1o97D 133 :GG Number of specific fragments extracted= 2 number of extra gaps= 3 total=34756 # 1z2uA.192.35 read from T0547.t2k.many.frag # found chain 1z2uA in training set Warning: unaligning (T0547)G198 (1z2uA)G39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1z2uA)P40 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GIWAKS 1z2uA 33 :WQATIM T0547 200 :I 1z2uA 41 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=34758 # 2d9rA.192.65 read from T0547.t2k.many.frag # found chain 2d9rA in template set Warning: unaligning (T0547)G192 (2d9rA)T66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)I69 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)I69 Warning: unaligning (T0547)G199 (2d9rA)G73 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :I 2d9rA 67 :G T0547 196 :KSG 2d9rA 70 :VRM T0547 200 :I 2d9rA 74 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=34761 # 1e4fT.192.91 read from T0547.t2k.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)G199 (1e4fT)F99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1e4fT)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 192 :GIWAKSG 1e4fT 92 :DTVIERD Number of specific fragments extracted= 1 number of extra gaps= 1 total=34762 # 1lugA.192.74 read from T0547.t2k.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE in next template residue (1lugA)A77 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE at template residue (1lugA)A77 Warning: unaligning (T0547)G199 (1lugA)P83 because G (3-10) conformation "forbidden" or filtered. T0547 194 :WAKSG 1lugA 78 :VLKGG T0547 200 :I 1lugA 84 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=34764 # 1knwA.192.151 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K196 (1knwA)N156 because Y (epsilon') conformation "forbidden" or filtered. T0547 192 :GIWA 1knwA 152 :SQKT T0547 197 :SGGI 1knwA 157 :TGGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34766 # 1xd8A.192.82 read from T0547.t2k.many.frag # found chain 1xd8A in template set Warning: unaligning (T0547)G192 (1xd8A)V83 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWAKSGGI 1xd8A 84 :KCVESGGP Number of specific fragments extracted= 1 number of extra gaps= 1 total=34767 # 1rp4A.192.137 read from T0547.t2k.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)G192 (1rp4A)A176 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1rp4A)D180 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1rp4A)A183 because G (3-10) conformation "forbidden" or filtered. T0547 193 :IWA 1rp4A 177 :VLI T0547 197 :SG 1rp4A 181 :LT T0547 200 :I 1rp4A 184 :N Number of specific fragments extracted= 3 number of extra gaps= 3 total=34770 # 1wd3A.192.42 read from T0547.t2k.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)G192 (1wd3A)T60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1wd3A)P65 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1wd3A)T67 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IWAK 1wd3A 61 :TTIS T0547 198 :G 1wd3A 66 :L T0547 200 :I 1wd3A 68 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=34773 # 1a12A.192.183 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)K196 (1a12A)L196 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1a12A)G197 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1a12A)C198 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GIWA 1a12A 192 :DLYT T0547 199 :GI 1a12A 199 :GE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34775 # 1xzwA.192.111 read from T0547.t2k.many.frag # found chain 1xzwA in template set Warning: unaligning (T0547)I193 (1xzwA)F113 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1xzwA)F115 because Y (epsilon') conformation "forbidden" or filtered. T0547 192 :G 1xzwA 112 :Q T0547 194 :W 1xzwA 114 :W T0547 196 :KSGGI 1xzwA 116 :VTPPK Number of specific fragments extracted= 3 number of extra gaps= 2 total=34778 # 1whsA.192.104 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)K196 (1whsA)Y103 because Y (epsilon') conformation "forbidden" or filtered. T0547 192 :GIWA 1whsA 99 :VGFS T0547 197 :SGGI 1whsA 104 :TNTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=34780 # 1pg6A.192.102 read from T0547.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)G192 (1pg6A)I96 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1pg6A)G102 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IWAKS 1pg6A 97 :VALEL T0547 199 :GI 1pg6A 103 :EK Number of specific fragments extracted= 2 number of extra gaps= 2 total=34782 # 1ftrA.192.272 read from T0547.t2k.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)G192 (1ftrA)V273 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1ftrA)A278 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IWAK 1ftrA 274 :VKIS T0547 198 :GGI 1ftrA 279 :GNF Number of specific fragments extracted= 2 number of extra gaps= 2 total=34784 # 1xd3A.192.167 read from T0547.t2k.many.frag # found chain 1xd3A in training set Warning: unaligning (T0547)K196 (1xd3A)A172 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1xd3A)H175 because E (beta_S) conformation "forbidden" or filtered. T0547 192 :GIWA 1xd3A 168 :LHFI T0547 197 :SG 1xd3A 173 :LV T0547 200 :I 1xd3A 176 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=34787 # 1s95A.192.180 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)K196 (1s95A)M351 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 T0547 192 :GIWA 1s95A 347 :KVLI T0547 197 :SGG 1s95A 352 :HGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=34789 # 1k2xB.192.13 read from T0547.t2k.many.frag # found chain 1k2xB in training set Warning: unaligning (T0547)G192 (1k2xB)A192 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IWAKSGGI 1k2xB 193 :AATSTGGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=34790 # 1zkoA.192.108 read from T0547.t2k.many.frag # found chain 1zkoA in training set Warning: unaligning (T0547)I193 (1zkoA)F98 because Y (epsilon') conformation "forbidden" or filtered. T0547 192 :G 1zkoA 97 :L T0547 194 :WAKSGGI 1zkoA 99 :KMEISDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34792 # 1kv7A.192.108 read from T0547.t2k.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)G192 (1kv7A)T137 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1kv7A)W139 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1kv7A)H143 because G (3-10) conformation "forbidden" or filtered. T0547 193 :I 1kv7A 138 :C T0547 195 :AKS 1kv7A 140 :FHP T0547 199 :GI 1kv7A 144 :QH Number of specific fragments extracted= 3 number of extra gaps= 3 total=34795 # 1mpgA.192.57 read from T0547.t2k.many.frag # found chain 1mpgA in training set T0547 192 :GIWAKSGGI 1mpgA 58 :TLHINLSAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34796 # 1h7sA.192.211 read from T0547.t2k.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G192 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IW 1h7sA 213 :PV T0547 196 :KSGGI 1h7sA 216 :CTGGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=34798 # 1pjhA.193.19 read from T0547.t2k.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)G199 (1pjhA)N26 because D (zeta) conformation "forbidden" or filtered. T0547 193 :IWAKSG 1pjhA 20 :FIIHLI T0547 200 :IN 1pjhA 27 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=34800 # 1xmtA.193.37 read from T0547.t2k.many.frag # found chain 1xmtA in training set T0547 193 :IWAKSGGIN 1xmtA 38 :DLVHTYVPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34801 # 1knwA.193.152 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K196 (1knwA)N156 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IWA 1knwA 153 :QKT T0547 197 :SGGIN 1knwA 157 :TGGEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=34803 # 1z2uA.193.36 read from T0547.t2k.many.frag # found chain 1z2uA in training set Warning: unaligning (T0547)G199 (1z2uA)P40 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWAKSG 1z2uA 34 :QATIMG T0547 200 :IN 1z2uA 41 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34805 # 1wdaA.193.480 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)W194 (1wdaA)F475 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1wdaA)S477 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1wdaA)P480 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :I 1wdaA 474 :E T0547 195 :A 1wdaA 476 :L T0547 197 :SG 1wdaA 478 :FV T0547 200 :IN 1wdaA 481 :AP Number of specific fragments extracted= 4 number of extra gaps= 3 total=34809 # 1zd0A.193.101 read from T0547.t2k.many.frag # found chain 1zd0A in training set Warning: unaligning (T0547)G198 (1zd0A)F106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1zd0A)N109 because G (3-10) conformation "forbidden" or filtered. T0547 193 :IWAKS 1zd0A 101 :NYIVT T0547 199 :GI 1zd0A 107 :GE Number of specific fragments extracted= 2 number of extra gaps= 2 total=34811 # 1azo.193.95 read from T0547.t2k.many.frag # found chain 1azo in training set Warning: unaligning (T0547)K196 (1azo)C96 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IWA 1azo 93 :TFV T0547 197 :SGGIN 1azo 97 :VAPLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=34813 # 1xd8A.193.83 read from T0547.t2k.many.frag # found chain 1xd8A in template set Warning: unaligning (T0547)G199 (1xd8A)G90 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWAKSG 1xd8A 84 :KCVESG T0547 200 :IN 1xd8A 91 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34815 # 2ae0X.193.118 read from T0547.t2k.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)K196 (2ae0X)R122 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWA 2ae0X 119 :PIY T0547 197 :SGGIN 2ae0X 123 :MPPKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=34817 # 1h16A.193.554 read from T0547.t2k.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)W194 (1h16A)D556 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :I 1h16A 555 :I T0547 195 :AKSGGIN 1h16A 557 :FEIEGEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=34819 # 1rp4A.193.138 read from T0547.t2k.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)G199 (1rp4A)A183 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1rp4A)P185 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWAKSG 1rp4A 177 :VLIDLT T0547 200 :I 1rp4A 184 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=34821 # 1t0fA.193.47 read from T0547.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)N201 (1t0fA)G53 because T (delta_L) conformation "forbidden" or filtered. T0547 193 :IWAKSGGI 1t0fA 45 :HRIYSHKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=34822 # 1fjgS.193.59 read from T0547.t2k.many.frag # found chain 1fjgS in template set Warning: unaligning (T0547)G198 (1fjgS)N65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1fjgS)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 193 :IWAKS 1fjgS 60 :VYITE T0547 199 :GI 1fjgS 66 :MV Number of specific fragments extracted= 2 number of extra gaps= 2 total=34824 1cfr expands to /projects/compbio/data/pdb/1cfr.pdb.gz 1cfr:Warning: there is no chain 1cfr will retry with 1cfrA # 1cfr.193.1 read from T0547.t2k.many.frag # adding 1cfr to template set # found chain 1cfr in template set Warning: unaligning (T0547)G198 (1cfr)S7 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1cfr)G10 because S (epsilon) conformation "forbidden" or filtered. T0547 193 :IWAKS 1cfr 2 :DIISK T0547 199 :GI 1cfr 8 :GE Number of specific fragments extracted= 2 number of extra gaps= 2 total=34826 # 1e4fT.193.92 read from T0547.t2k.many.frag # found chain 1e4fT in template set T0547 193 :IWAKSGGIN 1e4fT 93 :TVIERDFGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34827 # 1xzwA.193.99 read from T0547.t2k.many.frag # found chain 1xzwA in template set T0547 193 :IWAKSGGIN 1xzwA 100 :YYYRLGFGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=34828 # 1k2xB.193.14 read from T0547.t2k.many.frag # found chain 1k2xB in training set Warning: unaligning (T0547)S197 (1k2xB)T197 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1k2xB)G198 because G (3-10) conformation "forbidden" or filtered. T0547 193 :IWAK 1k2xB 193 :AATS T0547 199 :GIN 1k2xB 199 :GMT Number of specific fragments extracted= 2 number of extra gaps= 1 total=34830 # 1o97D.193.127 read from T0547.t2k.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)S197 (1o97D)R132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1o97D)G134 because E (beta_S) conformation "forbidden" or filtered. T0547 193 :IWAK 1o97D 128 :LVAT T0547 198 :G 1o97D 133 :G T0547 200 :IN 1o97D 135 :YN Number of specific fragments extracted= 3 number of extra gaps= 2 total=34833 # 1ga6A.193.59 read from T0547.t2k.many.frag # found chain 1ga6A in training set T0547 193 :IWAKSGGIN 1ga6A 60 :QTIQTGSSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=34834 # 1s95A.193.181 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)K196 (1s95A)M351 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 193 :IWA 1s95A 348 :VLI T0547 197 :SGG 1s95A 352 :HGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=34836 # 1tyv.193.89 read from T0547.t2k.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)G198 (1tyv)W207 because E (beta_S) conformation "forbidden" or filtered. T0547 193 :IWAKS 1tyv 202 :WVIKP T0547 199 :GIN 1tyv 208 :TDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=34838 # 1ftrA.193.273 read from T0547.t2k.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)K196 (1ftrA)S277 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1ftrA)F281 because G (3-10) conformation "forbidden" or filtered. T0547 193 :IWA 1ftrA 274 :VKI T0547 197 :SGG 1ftrA 278 :AGN T0547 201 :N 1ftrA 282 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=34841 # 1lugA.193.75 read from T0547.t2k.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE at template residue (1lugA)A77 Warning: unaligning (T0547)A195 (1lugA)L79 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1lugA)K80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1lugA)G81 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1lugA)P83 because G (3-10) conformation "forbidden" or filtered. T0547 194 :W 1lugA 78 :V T0547 198 :G 1lugA 82 :G T0547 200 :IN 1lugA 84 :LD Number of specific fragments extracted= 3 number of extra gaps= 3 total=34844 # 1whsA.193.105 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)W194 (1whsA)F101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1whsA)Y103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1whsA)T106 because N (gamma') conformation "forbidden" or filtered. T0547 193 :I 1whsA 100 :G T0547 195 :A 1whsA 102 :S T0547 197 :SG 1whsA 104 :TN T0547 200 :IN 1whsA 107 :SS Number of specific fragments extracted= 4 number of extra gaps= 3 total=34848 # 2d9rA.193.66 read from T0547.t2k.many.frag # found chain 2d9rA in template set Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)I69 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)I69 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)C76 T0547 193 :I 2d9rA 67 :G T0547 196 :KSGGI 2d9rA 70 :VRMGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=34850 # 1ct5A.193.139 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)S146 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)S146 T0547 193 :IWAK 1ct5A 141 :VQIN T0547 199 :GIN 1ct5A 147 :HED Number of specific fragments extracted= 2 number of extra gaps= 1 total=34852 # 1zkoA.193.109 read from T0547.t2k.many.frag # found chain 1zkoA in training set Warning: unaligning (T0547)I193 (1zkoA)F98 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1zkoA)D104 because D (zeta) conformation "forbidden" or filtered. T0547 194 :WAKSG 1zkoA 99 :KMEIS T0547 200 :IN 1zkoA 105 :EG Number of specific fragments extracted= 2 number of extra gaps= 2 total=34854 # 1xd3A.193.168 read from T0547.t2k.many.frag # found chain 1xd3A in training set Warning: unaligning (T0547)N201 (1xd3A)D177 because L (left) conformation "forbidden" or filtered. T0547 193 :IWAKSGGI 1xd3A 169 :HFIALVHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=34855 # 1a12A.193.184 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)K196 (1a12A)L196 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1a12A)G197 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1a12A)C198 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWA 1a12A 193 :LYT T0547 199 :GIN 1a12A 199 :GEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=34857 # 1n4wA.193.382 read from T0547.t2k.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)I200 (1n4wA)D395 because L (left) conformation "forbidden" or filtered. T0547 193 :IWAKSGG 1n4wA 388 :FVYDAAT T0547 201 :N 1n4wA 396 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=34859 # 1knwA.194.153 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G198 (1knwA)G158 because Y (epsilon') conformation "forbidden" or filtered. T0547 194 :WAKS 1knwA 154 :KTNT T0547 199 :GINS 1knwA 159 :GENS Number of specific fragments extracted= 2 number of extra gaps= 1 total=34861 # 1pjhA.194.20 read from T0547.t2k.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)G198 (1pjhA)I25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1pjhA)N26 because D (zeta) conformation "forbidden" or filtered. T0547 194 :WAKS 1pjhA 21 :IIHL T0547 200 :INS 1pjhA 27 :PDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=34863 # 1xmtA.194.38 read from T0547.t2k.many.frag # found chain 1xmtA in training set T0547 194 :WAKSGGINS 1xmtA 39 :LVHTYVPSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=34864 # 1wdaA.194.481 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K196 (1wdaA)S477 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. T0547 194 :WA 1wdaA 475 :FL T0547 197 :SGGIN 1wdaA 478 :FVPAP Number of specific fragments extracted= 2 number of extra gaps= 2 total=34866 # 1cfr.194.2 read from T0547.t2k.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)G198 (1cfr)S7 because G (3-10) conformation "forbidden" or filtered. T0547 194 :WAKS 1cfr 3 :IISK T0547 199 :GINS 1cfr 8 :GEGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=34868 # 1xd8A.194.84 read from T0547.t2k.many.frag # found chain 1xd8A in template set Warning: unaligning (T0547)S202 (1xd8A)P93 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :WAKSGGIN 1xd8A 85 :CVESGGPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=34869 # 1z2uA.194.37 read from T0547.t2k.many.frag # found chain 1z2uA in training set Warning: unaligning (T0547)A195 (1z2uA)T36 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1z2uA)P40 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :W 1z2uA 35 :A T0547 196 :KSG 1z2uA 37 :IMG T0547 200 :INS 1z2uA 41 :PES Number of specific fragments extracted= 3 number of extra gaps= 2 total=34872 # 1zd0A.194.102 read from T0547.t2k.many.frag # found chain 1zd0A in training set T0547 194 :WAKSGGINS 1zd0A 102 :YIVTFGENA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34873 # 1rp4A.194.139 read from T0547.t2k.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)G199 (1rp4A)A183 because G (3-10) conformation "forbidden" or filtered. T0547 194 :WAKSG 1rp4A 178 :LIDLT T0547 200 :INS 1rp4A 184 :NPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34875 # 1azo.194.96 read from T0547.t2k.many.frag # found chain 1azo in training set Warning: unaligning (T0547)G198 (1azo)A98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1azo)G102 because S (epsilon) conformation "forbidden" or filtered. T0547 194 :WAKS 1azo 94 :FVCV T0547 199 :GIN 1azo 99 :PLT Number of specific fragments extracted= 2 number of extra gaps= 2 total=34877 # 2ae0X.194.119 read from T0547.t2k.many.frag # found chain 2ae0X in template set T0547 194 :WAKSGGINS 2ae0X 120 :IYRMPPKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34878 # 1xzwA.194.100 read from T0547.t2k.many.frag # found chain 1xzwA in template set Warning: unaligning (T0547)I200 (1xzwA)G107 because S (epsilon) conformation "forbidden" or filtered. T0547 194 :WAKSGG 1xzwA 101 :YYRLGF T0547 201 :NS 1xzwA 108 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34880 # 1s95A.194.182 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)A195 (1s95A)I350 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1s95A)M351 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1s95A)G353 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 194 :W 1s95A 349 :L T0547 197 :S 1s95A 352 :H T0547 199 :G 1s95A 354 :G T0547 202 :S 1s95A 357 :S Number of specific fragments extracted= 4 number of extra gaps= 3 total=34884 # 1tyv.194.90 read from T0547.t2k.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)G198 (1tyv)W207 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1tyv)N211 because L (left) conformation "forbidden" or filtered. T0547 194 :WAKS 1tyv 203 :VIKP T0547 199 :GIN 1tyv 208 :TDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=34886 # 1h16A.194.555 read from T0547.t2k.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)G199 (1h16A)G561 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1h16A)Y563 because E (beta_S) conformation "forbidden" or filtered. T0547 194 :WAKSG 1h16A 556 :DFEIE T0547 200 :I 1h16A 562 :E T0547 202 :S 1h16A 564 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=34889 # 1t0fA.194.48 read from T0547.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)N201 (1t0fA)G53 because T (delta_L) conformation "forbidden" or filtered. T0547 194 :WAKSGGI 1t0fA 46 :RIYSHKT T0547 202 :S 1t0fA 54 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=34891 # 1k2xB.194.15 read from T0547.t2k.many.frag # found chain 1k2xB in training set Warning: unaligning (T0547)S197 (1k2xB)T197 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1k2xB)G198 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1k2xB)T201 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :WAK 1k2xB 194 :ATS T0547 199 :GI 1k2xB 199 :GM T0547 202 :S 1k2xB 202 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=34894 # 1e4fT.194.93 read from T0547.t2k.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)G198 (1e4fT)D98 because E (beta_S) conformation "forbidden" or filtered. T0547 194 :WAKS 1e4fT 94 :VIER T0547 199 :GINS 1e4fT 99 :FGEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34896 # 1whsA.194.106 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)W194 (1whsA)F101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1whsA)Y103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1whsA)T106 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1whsA)I110 T0547 195 :A 1whsA 102 :S T0547 197 :SG 1whsA 104 :TN T0547 200 :IN 1whsA 107 :SS Number of specific fragments extracted= 3 number of extra gaps= 4 total=34899 # 1fjgS.194.60 read from T0547.t2k.many.frag # found chain 1fjgS in template set Warning: unaligning (T0547)G199 (1fjgS)M66 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1fjgS)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 194 :WAKSG 1fjgS 61 :YITEN T0547 200 :I 1fjgS 67 :V T0547 202 :S 1fjgS 69 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=34902 # 1lugA.194.76 read from T0547.t2k.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)A195 (1lugA)L79 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1lugA)K80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1lugA)G82 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1lugA)P83 because G (3-10) conformation "forbidden" or filtered. T0547 194 :W 1lugA 78 :V T0547 197 :S 1lugA 81 :G T0547 200 :INS 1lugA 84 :LDG Number of specific fragments extracted= 3 number of extra gaps= 2 total=34905 # 1ftrA.194.274 read from T0547.t2k.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)G198 (1ftrA)G279 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1ftrA)N280 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1ftrA)F281 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1ftrA)G283 because T (delta_L) conformation "forbidden" or filtered. T0547 194 :WAKS 1ftrA 275 :KISA T0547 201 :N 1ftrA 282 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=34907 # 1ga6A.194.60 read from T0547.t2k.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)G198 (1ga6A)G65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1ga6A)S66 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :WAKS 1ga6A 61 :TIQT T0547 200 :INS 1ga6A 67 :SNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=34909 # 1o97D.194.128 read from T0547.t2k.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)S202 (1o97D)Q137 because L (left) conformation "forbidden" or filtered. T0547 194 :WAKSGGIN 1o97D 129 :VATRGGYN Number of specific fragments extracted= 1 number of extra gaps= 1 total=34910 # 1ct5A.194.140 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)S146 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)S146 T0547 194 :WAK 1ct5A 142 :QIN T0547 199 :GINS 1ct5A 147 :HEDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=34912 # 1xd3A.194.169 read from T0547.t2k.many.frag # found chain 1xd3A in training set Warning: unaligning (T0547)S202 (1xd3A)G178 because T (delta_L) conformation "forbidden" or filtered. T0547 194 :WAKSGGIN 1xd3A 170 :FIALVHVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=34913 # 1xpkC.194.313 read from T0547.t2k.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)G199 (1xpkC)V319 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1xpkC)G321 because T (delta_L) conformation "forbidden" or filtered. T0547 194 :WAKSG 1xpkC 314 :YSATL T0547 200 :I 1xpkC 320 :E T0547 202 :S 1xpkC 322 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=34916 1s4cA expands to /projects/compbio/data/pdb/1s4c.pdb.gz 1s4cA:# 1s4cA.194.2 read from T0547.t2k.many.frag # adding 1s4cA to template set # found chain 1s4cA in template set Warning: unaligning (T0547)G199 (1s4cA)N8 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :WAKSG 1s4cA 3 :ISSLT T0547 200 :INS 1s4cA 9 :PNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=34918 1n35A expands to /projects/compbio/data/pdb/1n35.pdb.gz 1n35A:# 1n35A.194.309 read from T0547.t2k.many.frag # adding 1n35A to template set # found chain 1n35A in template set Warning: unaligning (T0547)K196 (1n35A)G312 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1n35A)P315 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1n35A)S317 because Y (epsilon') conformation "forbidden" or filtered. T0547 194 :WA 1n35A 310 :YM T0547 197 :SG 1n35A 313 :VM T0547 200 :I 1n35A 316 :L T0547 202 :S 1n35A 318 :A Number of specific fragments extracted= 4 number of extra gaps= 3 total=34922 # 1opd.194.61 read from T0547.t2k.many.frag # found chain 1opd in training set T0547 194 :WAKSGGINS 1opd 62 :TISAEGEDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34923 # 1knwA.195.154 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G199 (1knwA)G159 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1knwA)N161 because G (3-10) conformation "forbidden" or filtered. T0547 195 :AKSG 1knwA 155 :TNTG T0547 200 :I 1knwA 160 :E T0547 202 :SK 1knwA 162 :SK Number of specific fragments extracted= 3 number of extra gaps= 2 total=34926 # 1pjhA.195.21 read from T0547.t2k.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)A195 (1pjhA)I22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1pjhA)L30 because L (left) conformation "forbidden" or filtered. T0547 196 :KSGGINS 1pjhA 23 :HLINPDN Number of specific fragments extracted= 1 number of extra gaps= 2 total=34927 # 1xmtA.195.39 read from T0547.t2k.many.frag # found chain 1xmtA in training set T0547 195 :AKSGGINSK 1xmtA 40 :VHTYVPSFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34928 # 1wdaA.195.482 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G199 (1wdaA)P480 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1wdaA)R484 because L (left) conformation "forbidden" or filtered. T0547 195 :AKSG 1wdaA 476 :LSFV T0547 200 :IN 1wdaA 481 :AP Number of specific fragments extracted= 2 number of extra gaps= 2 total=34930 # 1cfr.195.3 read from T0547.t2k.many.frag # found chain 1cfr in template set T0547 195 :AKSGGINSK 1cfr 4 :ISKSGEGNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34931 # 1z2uA.195.38 read from T0547.t2k.many.frag # found chain 1z2uA in training set Warning: unaligning (T0547)A195 (1z2uA)T36 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1z2uA)P40 because P (beta_P) conformation "forbidden" or filtered. T0547 196 :KSG 1z2uA 37 :IMG T0547 200 :INSK 1z2uA 41 :PESP Number of specific fragments extracted= 2 number of extra gaps= 2 total=34933 # 1xd8A.195.85 read from T0547.t2k.many.frag # found chain 1xd8A in template set Warning: unaligning (T0547)K196 (1xd8A)E87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1xd8A)G89 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1xd8A)G94 because T (delta_L) conformation "forbidden" or filtered. T0547 195 :A 1xd8A 86 :V T0547 197 :S 1xd8A 88 :S T0547 199 :GINS 1xd8A 90 :GPEP Number of specific fragments extracted= 3 number of extra gaps= 3 total=34936 # 1whsA.195.107 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)K196 (1whsA)Y103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1whsA)T106 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1whsA)I110 Warning: unaligning (T0547)K203 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1whsA)I110 T0547 195 :A 1whsA 102 :S T0547 197 :SG 1whsA 104 :TN T0547 200 :IN 1whsA 107 :SS Number of specific fragments extracted= 3 number of extra gaps= 3 total=34939 # 1h16A.195.556 read from T0547.t2k.many.frag # found chain 1h16A in training set T0547 195 :AKSGGINSK 1h16A 557 :FEIEGEYPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=34940 # 1tyv.195.91 read from T0547.t2k.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)S202 (1tyv)N211 because L (left) conformation "forbidden" or filtered. T0547 195 :AKSGGIN 1tyv 204 :IKPWTDD T0547 203 :K 1tyv 212 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=34942 # 1s95A.195.183 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)K196 (1s95A)M351 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 195 :A 1s95A 350 :I T0547 197 :SGG 1s95A 352 :HGG T0547 202 :SK 1s95A 357 :SE Number of specific fragments extracted= 3 number of extra gaps= 2 total=34945 # 1rp4A.195.140 read from T0547.t2k.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)G199 (1rp4A)A183 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1rp4A)R187 because Y (epsilon') conformation "forbidden" or filtered. T0547 195 :AKSG 1rp4A 179 :IDLT T0547 200 :INS 1rp4A 184 :NPE Number of specific fragments extracted= 2 number of extra gaps= 2 total=34947 # 1azo.195.97 read from T0547.t2k.many.frag # found chain 1azo in training set Warning: unaligning (T0547)K196 (1azo)C96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1azo)A98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1azo)P99 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1azo)G102 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1azo)N103 because L (left) conformation "forbidden" or filtered. T0547 195 :A 1azo 95 :V T0547 197 :S 1azo 97 :V T0547 200 :IN 1azo 100 :LT Number of specific fragments extracted= 3 number of extra gaps= 3 total=34950 # 2ae0X.195.120 read from T0547.t2k.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)K196 (2ae0X)R122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (2ae0X)P124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (2ae0X)P125 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :A 2ae0X 121 :Y T0547 197 :S 2ae0X 123 :M T0547 200 :INSK 2ae0X 126 :KRGR Number of specific fragments extracted= 3 number of extra gaps= 2 total=34953 # 1xzwA.195.101 read from T0547.t2k.many.frag # found chain 1xzwA in template set Warning: unaligning (T0547)I200 (1xzwA)G107 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1xzwA)D108 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1xzwA)K110 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKSGG 1xzwA 102 :YRLGF T0547 202 :S 1xzwA 109 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=34955 # 1zd0A.195.103 read from T0547.t2k.many.frag # found chain 1zd0A in training set Warning: unaligning (T0547)A195 (1zd0A)I103 because E (beta_S) conformation "forbidden" or filtered. T0547 196 :KSGGINSK 1zd0A 104 :VTFGENAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=34956 # 1k2xB.195.16 read from T0547.t2k.many.frag # found chain 1k2xB in training set Warning: unaligning (T0547)K196 (1k2xB)S196 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1k2xB)G198 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1k2xB)N202 because L (left) conformation "forbidden" or filtered. T0547 195 :A 1k2xB 195 :T T0547 197 :S 1k2xB 197 :T T0547 199 :GIN 1k2xB 199 :GMT T0547 203 :K 1k2xB 203 :K Number of specific fragments extracted= 4 number of extra gaps= 3 total=34960 # 1xpkC.195.314 read from T0547.t2k.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)G198 (1xpkC)L318 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKS 1xpkC 315 :SAT T0547 199 :GINSK 1xpkC 319 :VEGYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34962 # 1e4fT.195.94 read from T0547.t2k.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)I200 (1e4fT)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 195 :AKSGG 1e4fT 95 :IERDF T0547 201 :NSK 1e4fT 101 :EEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34964 # 1o97D.195.129 read from T0547.t2k.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)G198 (1o97D)G133 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKS 1o97D 130 :ATR T0547 199 :GINSK 1o97D 134 :GYNQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34966 # 1t0fA.195.49 read from T0547.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)N201 (1t0fA)G53 because T (delta_L) conformation "forbidden" or filtered. T0547 195 :AKSGGI 1t0fA 47 :IYSHKT T0547 202 :SK 1t0fA 54 :RV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34968 # 1n35A.195.310 read from T0547.t2k.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)K196 (1n35A)G312 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1n35A)M314 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1n35A)P315 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1n35A)S317 because Y (epsilon') conformation "forbidden" or filtered. T0547 195 :A 1n35A 311 :M T0547 197 :S 1n35A 313 :V T0547 200 :I 1n35A 316 :L T0547 202 :SK 1n35A 318 :AK Number of specific fragments extracted= 4 number of extra gaps= 3 total=34972 # 1s4cA.195.3 read from T0547.t2k.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)A195 (1s4cA)S4 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1s4cA)N8 because P (beta_P) conformation "forbidden" or filtered. T0547 196 :KSG 1s4cA 5 :SLT T0547 200 :INSK 1s4cA 9 :PNFK Number of specific fragments extracted= 2 number of extra gaps= 2 total=34974 # 1lugA.195.77 read from T0547.t2k.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)K196 (1lugA)K80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1lugA)G86 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1lugA)T87 because E (beta_S) conformation "forbidden" or filtered. T0547 195 :A 1lugA 79 :L T0547 197 :SGGIN 1lugA 81 :GGPLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=34976 # 1ga6A.195.61 read from T0547.t2k.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)S202 (1ga6A)G69 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKSGGIN 1ga6A 62 :IQTGSSN T0547 203 :K 1ga6A 70 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=34978 # 1fjgS.195.61 read from T0547.t2k.many.frag # found chain 1fjgS in template set Warning: unaligning (T0547)G198 (1fjgS)N65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1fjgS)M66 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1fjgS)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 195 :AKS 1fjgS 62 :ITE T0547 200 :I 1fjgS 67 :V T0547 202 :SK 1fjgS 69 :HK Number of specific fragments extracted= 3 number of extra gaps= 2 total=34981 # 1senA.195.121 read from T0547.t2k.many.frag # found chain 1senA in training set T0547 195 :AKSGGINSK 1senA 130 :NENGNPSYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34982 # 1ftrA.195.275 read from T0547.t2k.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)K196 (1ftrA)S277 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1ftrA)N280 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1ftrA)G282 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1ftrA)G283 because T (delta_L) conformation "forbidden" or filtered. T0547 195 :A 1ftrA 276 :I T0547 197 :SG 1ftrA 278 :AG T0547 200 :I 1ftrA 281 :F T0547 203 :K 1ftrA 284 :K Number of specific fragments extracted= 4 number of extra gaps= 3 total=34986 # 1a12A.195.186 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)A195 (1a12A)T195 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1a12A)C198 because P (beta_P) conformation "forbidden" or filtered. T0547 196 :KS 1a12A 196 :LG T0547 199 :GINSK 1a12A 199 :GEQGQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=34988 # 1ze3D.195.48 read from T0547.t2k.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)I200 (1ze3D)G54 because Y (epsilon') conformation "forbidden" or filtered. T0547 195 :AKSGG 1ze3D 49 :VTFNT T0547 201 :NSK 1ze3D 55 :DSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34990 # 1knwA.196.155 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K196 (1knwA)N156 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1knwA)G159 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1knwA)N161 because G (3-10) conformation "forbidden" or filtered. T0547 197 :SG 1knwA 157 :TG T0547 200 :I 1knwA 160 :E T0547 202 :SKF 1knwA 162 :SKH Number of specific fragments extracted= 3 number of extra gaps= 3 total=34993 # 1pjhA.196.22 read from T0547.t2k.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)G199 (1pjhA)N26 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1pjhA)L30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1pjhA)N31 because L (left) conformation "forbidden" or filtered. T0547 196 :KSG 1pjhA 23 :HLI T0547 200 :INS 1pjhA 27 :PDN Number of specific fragments extracted= 2 number of extra gaps= 2 total=34995 # 1xmtA.196.40 read from T0547.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G198 (1xmtA)Y43 because E (beta_S) conformation "forbidden" or filtered. T0547 196 :KS 1xmtA 41 :HT T0547 199 :GINSKF 1xmtA 44 :VPSFKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=34997 # 1wdaA.196.483 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K196 (1wdaA)S477 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1wdaA)P480 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. T0547 197 :SG 1wdaA 478 :FV T0547 200 :IN 1wdaA 481 :AP T0547 203 :KF 1wdaA 484 :RK Number of specific fragments extracted= 3 number of extra gaps= 3 total=35000 # 1cfr.196.4 read from T0547.t2k.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)G198 (1cfr)S7 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1cfr)K12 because P (beta_P) conformation "forbidden" or filtered. T0547 196 :KS 1cfr 5 :SK T0547 199 :GINS 1cfr 8 :GEGN T0547 204 :F 1cfr 13 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=35003 # 1whsA.196.108 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)K196 (1whsA)Y103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1whsA)I110 Warning: unaligning (T0547)K203 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1whsA)I110 T0547 197 :SGGIN 1whsA 104 :TNTSS T0547 204 :F 1whsA 111 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=35005 # 1h16A.196.557 read from T0547.t2k.many.frag # found chain 1h16A in training set T0547 196 :KSGGINSKF 1h16A 558 :EIEGEYPQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35006 # 1z2uA.196.39 read from T0547.t2k.many.frag # found chain 1z2uA in training set Warning: unaligning (T0547)G198 (1z2uA)G39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1z2uA)P40 because P (beta_P) conformation "forbidden" or filtered. T0547 196 :KS 1z2uA 37 :IM T0547 200 :INSKF 1z2uA 41 :PESPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35008 # 1tyv.196.92 read from T0547.t2k.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)G198 (1tyv)W207 because E (beta_S) conformation "forbidden" or filtered. T0547 196 :KS 1tyv 205 :KP T0547 199 :GINSKF 1tyv 208 :TDDNQW Number of specific fragments extracted= 2 number of extra gaps= 1 total=35010 # 1s95A.196.184 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)G199 (1s95A)G354 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 196 :KSG 1s95A 351 :MHG T0547 202 :SKF 1s95A 357 :SED Number of specific fragments extracted= 2 number of extra gaps= 1 total=35012 # 1azo.196.98 read from T0547.t2k.many.frag # found chain 1azo in training set Warning: unaligning (T0547)K196 (1azo)C96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1azo)A98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1azo)P99 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1azo)G102 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1azo)N103 because L (left) conformation "forbidden" or filtered. T0547 197 :S 1azo 97 :V T0547 200 :IN 1azo 100 :LT T0547 204 :F 1azo 104 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=35015 # 1xpkC.196.315 read from T0547.t2k.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)G198 (1xpkC)L318 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1xpkC)V319 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1xpkC)G321 because T (delta_L) conformation "forbidden" or filtered. T0547 196 :KS 1xpkC 316 :AT T0547 200 :I 1xpkC 320 :E T0547 202 :SKF 1xpkC 322 :YKD Number of specific fragments extracted= 3 number of extra gaps= 2 total=35018 # 1xd8A.196.86 read from T0547.t2k.many.frag # found chain 1xd8A in template set Warning: unaligning (T0547)G198 (1xd8A)G89 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1xd8A)G94 because T (delta_L) conformation "forbidden" or filtered. T0547 196 :KS 1xd8A 87 :ES T0547 199 :GINS 1xd8A 90 :GPEP T0547 204 :F 1xd8A 95 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=35021 # 2ae0X.196.121 read from T0547.t2k.many.frag # found chain 2ae0X in template set T0547 196 :KSGGINSKF 2ae0X 122 :RMPPKRGRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35022 # 1rp4A.196.141 read from T0547.t2k.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)K203 (1rp4A)R187 because Y (epsilon') conformation "forbidden" or filtered. T0547 196 :KSGGINS 1rp4A 180 :DLTANPE T0547 204 :F 1rp4A 188 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=35024 # 1fjgS.196.62 read from T0547.t2k.many.frag # found chain 1fjgS in template set Warning: unaligning (T0547)G199 (1fjgS)M66 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1fjgS)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 196 :KSG 1fjgS 63 :TEN T0547 200 :I 1fjgS 67 :V T0547 202 :SKF 1fjgS 69 :HKL Number of specific fragments extracted= 3 number of extra gaps= 2 total=35027 # 1n35A.196.311 read from T0547.t2k.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)G198 (1n35A)M314 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1n35A)S317 because Y (epsilon') conformation "forbidden" or filtered. T0547 196 :KS 1n35A 312 :GV T0547 199 :GI 1n35A 315 :PL T0547 202 :SKF 1n35A 318 :AKY Number of specific fragments extracted= 3 number of extra gaps= 2 total=35030 # 1qo7A.196.43 read from T0547.t2k.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)G199 (1qo7A)Q49 because N (gamma') conformation "forbidden" or filtered. T0547 196 :KSG 1qo7A 46 :ESL T0547 200 :INSKF 1qo7A 50 :ADGRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=35032 # 1e4fT.196.95 read from T0547.t2k.many.frag # found chain 1e4fT in template set T0547 196 :KSGGINSKF 1e4fT 96 :ERDFGEEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35033 # 1senA.196.122 read from T0547.t2k.many.frag # found chain 1senA in training set Warning: unaligning (T0547)G199 (1senA)N134 because P (beta_P) conformation "forbidden" or filtered. T0547 196 :KSG 1senA 131 :ENG T0547 200 :INSKF 1senA 135 :PSYKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35035 # 1s4cA.196.4 read from T0547.t2k.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)G199 (1s4cA)N8 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1s4cA)N10 because G (3-10) conformation "forbidden" or filtered. T0547 196 :KSG 1s4cA 5 :SLT T0547 200 :I 1s4cA 9 :P T0547 202 :SKF 1s4cA 11 :FKV Number of specific fragments extracted= 3 number of extra gaps= 2 total=35038 # 1k2xB.196.17 read from T0547.t2k.many.frag # found chain 1k2xB in training set Warning: unaligning (T0547)S197 (1k2xB)T197 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1k2xB)G199 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1k2xB)N202 because L (left) conformation "forbidden" or filtered. T0547 196 :K 1k2xB 196 :S T0547 198 :G 1k2xB 198 :G T0547 200 :IN 1k2xB 200 :MT T0547 203 :KF 1k2xB 203 :KL Number of specific fragments extracted= 4 number of extra gaps= 3 total=35042 # 1a12A.196.187 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)S197 (1a12A)G197 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1a12A)C198 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1a12A)G199 because G (3-10) conformation "forbidden" or filtered. T0547 196 :K 1a12A 196 :L T0547 200 :INSKF 1a12A 200 :EQGQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35044 # 1xzwA.196.102 read from T0547.t2k.many.frag # found chain 1xzwA in template set T0547 196 :KSGGINSKF 1xzwA 103 :RLGFGDAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35045 # 1o97D.196.130 read from T0547.t2k.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)G199 (1o97D)G134 because E (beta_S) conformation "forbidden" or filtered. T0547 196 :KSG 1o97D 131 :TRG T0547 200 :INSKF 1o97D 135 :YNQKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35047 # 1n4wA.196.385 read from T0547.t2k.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)G199 (1n4wA)T394 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1n4wA)D395 because L (left) conformation "forbidden" or filtered. T0547 196 :KSG 1n4wA 391 :DAA T0547 201 :NSKF 1n4wA 396 :RAKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35049 # 1lugA.196.78 read from T0547.t2k.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)K196 (1lugA)K80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1lugA)P83 because G (3-10) conformation "forbidden" or filtered. T0547 197 :SG 1lugA 81 :GG T0547 200 :INSKF 1lugA 84 :LDGTY Number of specific fragments extracted= 2 number of extra gaps= 2 total=35051 # 1wddA.196.169 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)S197 (1wddA)G171 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1wddA)C172 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1wddA)T173 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wddA)P176 because C (cis) conformation "forbidden" or filtered. T0547 196 :K 1wddA 170 :L T0547 200 :IN 1wddA 174 :IK T0547 203 :KF 1wddA 177 :KL Number of specific fragments extracted= 3 number of extra gaps= 2 total=35054 # 2bg5A.196.96 read from T0547.t2k.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)K196 (2bg5A)D346 because L (left) conformation "forbidden" or filtered. T0547 197 :SGGINSKF 2bg5A 347 :MPKEMNPF Number of specific fragments extracted= 1 number of extra gaps= 1 total=35055 # 1j8rA.196.162 read from T0547.t2k.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)G198 (1j8rA)S165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1j8rA)Y166 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1j8rA)G168 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1j8rA)R170 because E (beta_S) conformation "forbidden" or filtered. T0547 196 :KS 1j8rA 163 :FA T0547 200 :I 1j8rA 167 :L T0547 202 :S 1j8rA 169 :A T0547 204 :F 1j8rA 171 :F Number of specific fragments extracted= 4 number of extra gaps= 3 total=35059 # 1knwA.197.156 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 197 :SGGINSKFG 1knwA 157 :TGGENSKHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35060 # 1pjhA.197.23 read from T0547.t2k.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)G199 (1pjhA)N26 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1pjhA)N31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1pjhA)A32 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :SG 1pjhA 24 :LI T0547 200 :INSK 1pjhA 27 :PDNL Number of specific fragments extracted= 2 number of extra gaps= 2 total=35062 # 1xmtA.197.41 read from T0547.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G198 (1xmtA)Y43 because E (beta_S) conformation "forbidden" or filtered. T0547 197 :S 1xmtA 42 :T T0547 199 :GINSKFG 1xmtA 44 :VPSFKRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=35064 # 1cfr.197.5 read from T0547.t2k.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)G198 (1cfr)S7 because G (3-10) conformation "forbidden" or filtered. T0547 197 :S 1cfr 6 :K T0547 199 :GINSKFG 1cfr 8 :GEGNKYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35066 # 1wdaA.197.484 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1wdaA)R484 because L (left) conformation "forbidden" or filtered. T0547 197 :SGGIN 1wdaA 478 :FVPAP T0547 204 :FG 1wdaA 485 :KG Number of specific fragments extracted= 2 number of extra gaps= 1 total=35068 # 1h16A.197.558 read from T0547.t2k.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)G199 (1h16A)G561 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1h16A)Q565 because E (beta_S) conformation "forbidden" or filtered. T0547 197 :SG 1h16A 559 :IE T0547 200 :INS 1h16A 562 :EYP T0547 204 :FG 1h16A 566 :FG Number of specific fragments extracted= 3 number of extra gaps= 2 total=35071 # 1whsA.197.109 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)G199 (1whsA)T106 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1whsA)I110 Warning: unaligning (T0547)K203 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1whsA)I110 T0547 197 :SG 1whsA 104 :TN T0547 200 :IN 1whsA 107 :SS T0547 204 :FG 1whsA 111 :YT Number of specific fragments extracted= 3 number of extra gaps= 2 total=35074 # 1s95A.197.185 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 197 :SGG 1s95A 352 :HGG T0547 202 :SKFG 1s95A 357 :SEDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=35076 # 1qo7A.197.44 read from T0547.t2k.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)G198 (1qo7A)L48 because G (3-10) conformation "forbidden" or filtered. T0547 197 :S 1qo7A 47 :S T0547 199 :GINSKFG 1qo7A 49 :QADGRFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=35078 # 1tyv.197.93 read from T0547.t2k.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)G198 (1tyv)W207 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1tyv)T208 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1tyv)D210 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1tyv)N211 because L (left) conformation "forbidden" or filtered. T0547 197 :S 1tyv 206 :P T0547 200 :I 1tyv 209 :D T0547 203 :KFG 1tyv 212 :QWL Number of specific fragments extracted= 3 number of extra gaps= 2 total=35081 1gx5A expands to /projects/compbio/data/pdb/1gx5.pdb.gz 1gx5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3197, because occupancy 0.400 <= existing 0.600 in 1gx5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3198, because occupancy 0.400 <= existing 0.600 in 1gx5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3199, because occupancy 0.400 <= existing 0.600 in 1gx5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1gx5A.197.93 read from T0547.t2k.many.frag # adding 1gx5A to template set # found chain 1gx5A in template set Warning: unaligning (T0547)G198 (1gx5A)H95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1gx5A)K98 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :S 1gx5A 94 :P T0547 199 :GI 1gx5A 96 :SA T0547 202 :SKFG 1gx5A 99 :SKFG Number of specific fragments extracted= 3 number of extra gaps= 2 total=35084 # 1z2uA.197.40 read from T0547.t2k.many.frag # found chain 1z2uA in training set Warning: unaligning (T0547)G198 (1z2uA)G39 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :S 1z2uA 38 :M T0547 199 :GINSKFG 1z2uA 40 :PPESPYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=35086 # 1xpkC.197.316 read from T0547.t2k.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)N201 (1xpkC)G321 because T (delta_L) conformation "forbidden" or filtered. T0547 197 :SGGI 1xpkC 317 :TLVE T0547 202 :SKFG 1xpkC 322 :YKDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=35088 # 1n35A.197.312 read from T0547.t2k.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)G198 (1n35A)M314 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1n35A)S317 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1n35A)A321 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :S 1n35A 313 :V T0547 199 :GI 1n35A 315 :PL T0547 202 :SKF 1n35A 318 :AKY Number of specific fragments extracted= 3 number of extra gaps= 3 total=35091 # 1e4fT.197.96 read from T0547.t2k.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)I200 (1e4fT)G100 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1e4fT)S105 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :SGG 1e4fT 97 :RDF T0547 201 :NSKF 1e4fT 101 :EEKR Number of specific fragments extracted= 2 number of extra gaps= 2 total=35093 # 1azo.197.99 read from T0547.t2k.many.frag # found chain 1azo in training set Warning: unaligning (T0547)G198 (1azo)A98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1azo)P99 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1azo)T101 because E (beta_S) conformation "forbidden" or filtered. T0547 197 :S 1azo 97 :V T0547 200 :I 1azo 100 :L T0547 202 :SKFG 1azo 102 :GNSG Number of specific fragments extracted= 3 number of extra gaps= 2 total=35096 # 1fjgS.197.63 read from T0547.t2k.many.frag # found chain 1fjgS in template set Warning: unaligning (T0547)G198 (1fjgS)N65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1fjgS)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 197 :S 1fjgS 64 :E T0547 199 :GI 1fjgS 66 :MV T0547 202 :SKFG 1fjgS 69 :HKLG Number of specific fragments extracted= 3 number of extra gaps= 2 total=35099 1lvfA expands to /projects/compbio/data/pdb/1lvf.pdb.gz 1lvfA:# 1lvfA.197.70 read from T0547.t2k.many.frag # adding 1lvfA to template set # found chain 1lvfA in template set T0547 197 :SGGINSKFG 1lvfA 71 :VEANPRKFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35100 # 1senA.197.123 read from T0547.t2k.many.frag # found chain 1senA in training set T0547 197 :SGGINSKFG 1senA 132 :NGNPSYKYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35101 # 2ae0X.197.122 read from T0547.t2k.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)G198 (2ae0X)P124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (2ae0X)P125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (2ae0X)S131 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :S 2ae0X 123 :M T0547 200 :INSKF 2ae0X 126 :KRGRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=35103 # 1wddA.197.170 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)S197 (1wddA)G171 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wddA)P176 because C (cis) conformation "forbidden" or filtered. T0547 198 :GGIN 1wddA 172 :CTIK T0547 203 :KFG 1wddA 177 :KLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=35105 # 1a12A.197.188 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)S202 (1a12A)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 197 :SGGIN 1a12A 197 :GCGEQ T0547 203 :KFG 1a12A 203 :QLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=35107 # 1rqlA.197.203 read from T0547.t2k.many.frag # found chain 1rqlA in template set Warning: unaligning (T0547)I200 (1rqlA)G207 because T (delta_L) conformation "forbidden" or filtered. T0547 197 :SGG 1rqlA 204 :VIL T0547 201 :NSKFG 1rqlA 208 :SSELG Number of specific fragments extracted= 2 number of extra gaps= 1 total=35109 # 1j8rA.197.163 read from T0547.t2k.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)G205 (1j8rA)K172 because E (beta_S) conformation "forbidden" or filtered. T0547 197 :SGGINSKF 1j8rA 164 :ASYLGARF Number of specific fragments extracted= 1 number of extra gaps= 1 total=35110 # 1n4wA.197.386 read from T0547.t2k.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)G199 (1n4wA)T394 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1n4wA)D395 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1n4wA)K398 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE in next template residue (1n4wA)W401 T0547 197 :SG 1n4wA 392 :AA T0547 201 :NS 1n4wA 396 :RA T0547 204 :F 1n4wA 399 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=35113 1nu7D expands to /projects/compbio/data/pdb/1nu7.pdb.gz 1nu7D:# 1nu7D.197.11 read from T0547.t2k.many.frag # adding 1nu7D to template set # found chain 1nu7D in template set Warning: unaligning (T0547)G198 (1nu7D)V12 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :S 1nu7D 11 :R T0547 199 :GINSKFG 1nu7D 13 :NENSKYG Number of specific fragments extracted= 2 number of extra gaps= 1 total=35115 # 1s4cA.197.5 read from T0547.t2k.many.frag # found chain 1s4cA in template set T0547 197 :SGGINSKFG 1s4cA 6 :LTNPNFKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35116 # 1ijyA.197.24 read from T0547.t2k.many.frag # found chain 1ijyA in training set Warning: unaligning (T0547)G198 (1ijyA)T24 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1ijyA)P27 because C (cis) conformation "forbidden" or filtered. T0547 197 :S 1ijyA 23 :Y T0547 199 :GI 1ijyA 25 :YM T0547 202 :SKFG 1ijyA 28 :NQFN Number of specific fragments extracted= 3 number of extra gaps= 2 total=35119 # 2bg5A.197.97 read from T0547.t2k.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)G199 (2bg5A)K349 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :SG 2bg5A 347 :MP T0547 200 :INSKFG 2bg5A 350 :EMNPFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35121 # 1xd8A.197.87 read from T0547.t2k.many.frag # found chain 1xd8A in template set Warning: unaligning (T0547)G205 (1xd8A)G96 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :SGGINSKF 1xd8A 88 :SGGPEPGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=35122 # 1knwA.198.157 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N201 (1knwA)N161 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1knwA)G165 because S (epsilon) conformation "forbidden" or filtered. T0547 198 :GGI 1knwA 158 :GGE T0547 202 :SKF 1knwA 162 :SKH T0547 206 :L 1knwA 166 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=35125 # 1qo7A.198.45 read from T0547.t2k.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)G198 (1qo7A)L48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1qo7A)Q49 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. T0547 200 :IN 1qo7A 50 :AD T0547 203 :KFGL 1qo7A 53 :RFGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=35127 # 1pjhA.198.24 read from T0547.t2k.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)G198 (1pjhA)I25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1pjhA)L30 because L (left) conformation "forbidden" or filtered. T0547 199 :GINS 1pjhA 26 :NPDN T0547 204 :FGL 1pjhA 31 :NAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=35129 # 1cfr.198.6 read from T0547.t2k.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)G198 (1cfr)S7 because G (3-10) conformation "forbidden" or filtered. T0547 199 :GINSKFGL 1cfr 8 :GEGNKYTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=35130 # 1xmtA.198.42 read from T0547.t2k.many.frag # found chain 1xmtA in training set T0547 198 :GGINSKFGL 1xmtA 43 :YVPSFKRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35131 # 1h16A.198.559 read from T0547.t2k.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)G198 (1h16A)E560 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1h16A)G561 because S (epsilon) conformation "forbidden" or filtered. T0547 200 :INSKFGL 1h16A 562 :EYPQFGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=35132 # 1gx5A.198.94 read from T0547.t2k.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L206 (1gx5A)Y103 because Y (epsilon') conformation "forbidden" or filtered. T0547 198 :GGINSKFG 1gx5A 95 :HSAKSKFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=35133 # 1whsA.198.110 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1whsA)I110 Warning: unaligning (T0547)K203 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1whsA)I110 Warning: unaligning (T0547)F204 (1whsA)Y111 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1whsA)T112 because G (3-10) conformation "forbidden" or filtered. T0547 198 :GGIN 1whsA 105 :NTSS T0547 206 :L 1whsA 112A:S Number of specific fragments extracted= 2 number of extra gaps= 1 total=35135 # 1s95A.198.186 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 198 :GG 1s95A 353 :GG T0547 202 :SKFGL 1s95A 357 :SEDGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35137 # 1tyv.198.94 read from T0547.t2k.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)G198 (1tyv)W207 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1tyv)N211 because L (left) conformation "forbidden" or filtered. T0547 199 :GIN 1tyv 208 :TDD T0547 203 :KFGL 1tyv 212 :QWLT Number of specific fragments extracted= 2 number of extra gaps= 2 total=35139 # 7odcA.198.163 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 204 :FGL 7odcA 170 :FGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35140 # 1wdaA.198.485 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G198 (1wdaA)V479 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L206 (1wdaA)F487 because Y (epsilon') conformation "forbidden" or filtered. T0547 199 :GIN 1wdaA 480 :PAP T0547 203 :KFG 1wdaA 484 :RKG Number of specific fragments extracted= 2 number of extra gaps= 3 total=35142 # 1rqlA.198.204 read from T0547.t2k.many.frag # found chain 1rqlA in template set T0547 198 :GGINSKFGL 1rqlA 205 :ILGSSELGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35143 # 1e4fT.198.97 read from T0547.t2k.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)I200 (1e4fT)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 198 :GG 1e4fT 98 :DF T0547 201 :NSKFGL 1e4fT 101 :EEKRSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=35145 # 1wddA.198.171 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)G199 (1wddA)T173 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wddA)P176 because C (cis) conformation "forbidden" or filtered. T0547 198 :G 1wddA 172 :C T0547 200 :IN 1wddA 174 :IK T0547 203 :KFGL 1wddA 177 :KLGL Number of specific fragments extracted= 3 number of extra gaps= 2 total=35148 # 1n35A.198.313 read from T0547.t2k.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)G199 (1n35A)P315 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1n35A)S317 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1n35A)Y320 because G (3-10) conformation "forbidden" or filtered. T0547 198 :G 1n35A 314 :M T0547 200 :I 1n35A 316 :L T0547 202 :SK 1n35A 318 :AK T0547 205 :GL 1n35A 321 :AR Number of specific fragments extracted= 4 number of extra gaps= 3 total=35152 # 1lwbA.198.46 read from T0547.t2k.many.frag # found chain 1lwbA in training set Warning: unaligning (T0547)G199 (1lwbA)A48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1lwbA)D50 because P (beta_P) conformation "forbidden" or filtered. T0547 198 :G 1lwbA 47 :Q T0547 200 :I 1lwbA 49 :P T0547 202 :SKFGL 1lwbA 51 :NPFGF Number of specific fragments extracted= 3 number of extra gaps= 2 total=35155 # 1lvfA.198.71 read from T0547.t2k.many.frag # found chain 1lvfA in template set T0547 198 :GGINSKFGL 1lvfA 72 :EANPRKFNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35156 # 1senA.198.124 read from T0547.t2k.many.frag # found chain 1senA in training set Warning: unaligning (T0547)G199 (1senA)N134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1senA)F140 because N (gamma') conformation "forbidden" or filtered. T0547 198 :G 1senA 133 :G T0547 200 :INSKF 1senA 135 :PSYKY T0547 206 :L 1senA 141 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=35159 # 1in0A.198.93 read from T0547.t2k.many.frag # found chain 1in0A in template set Warning: unaligning (T0547)G199 (1in0A)E95 because N (gamma') conformation "forbidden" or filtered. T0547 198 :G 1in0A 94 :K T0547 200 :INSKFGL 1in0A 96 :IKLKQGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=35161 # 1j8rA.198.164 read from T0547.t2k.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)N201 (1j8rA)G168 because T (delta_L) conformation "forbidden" or filtered. T0547 198 :GGI 1j8rA 165 :SYL T0547 202 :SKFGL 1j8rA 169 :ARFKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=35163 # 1xpkC.198.317 read from T0547.t2k.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)G205 (1xpkC)H325 because G (3-10) conformation "forbidden" or filtered. T0547 198 :GGINSKF 1xpkC 318 :LVEGYKD T0547 206 :L 1xpkC 326 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=35165 # 1n4wA.198.387 read from T0547.t2k.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE in next template residue (1n4wA)W401 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE at template residue (1n4wA)W401 T0547 198 :GGINSKF 1n4wA 393 :ATDRAKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35166 # 1t0bA.198.51 read from T0547.t2k.many.frag # found chain 1t0bA in training set T0547 198 :GGINSKFGL 1t0bA 49 :VLDEPEHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35167 # 1nu7D.198.12 read from T0547.t2k.many.frag # found chain 1nu7D in template set Warning: unaligning (T0547)G198 (1nu7D)V12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1nu7D)N13 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1nu7D)Y18 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1nu7D)G19 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :INSK 1nu7D 14 :ENSK T0547 206 :L 1nu7D 20 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=35169 # 1fjgS.198.64 read from T0547.t2k.many.frag # found chain 1fjgS in template set Warning: unaligning (T0547)G198 (1fjgS)N65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1fjgS)M66 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1fjgS)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 200 :I 1fjgS 67 :V T0547 202 :SKFGL 1fjgS 69 :HKLGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=35171 1u00A expands to /projects/compbio/data/pdb/1u00.pdb.gz 1u00A:# 1u00A.198.107 read from T0547.t2k.many.frag # adding 1u00A to template set # found chain 1u00A in template set Warning: unaligning (T0547)K203 (1u00A)S501 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE in next template residue (1u00A)L504 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE at template residue (1u00A)L504 T0547 198 :GGINS 1u00A 496 :IQVKP T0547 204 :F 1u00A 502 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=35173 # 1a12A.198.189 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)S202 (1a12A)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 198 :GGIN 1a12A 198 :CGEQ T0547 203 :KFGL 1a12A 203 :QLGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35175 # 1oygA.198.250 read from T0547.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)G199 (1oygA)F278 because G (3-10) conformation "forbidden" or filtered. T0547 198 :G 1oygA 277 :L T0547 200 :INSKFGL 1oygA 279 :NKAYYGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=35177 # 1qtwA.198.147 read from T0547.t2k.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)N201 (1qtwA)G151 because S (epsilon) conformation "forbidden" or filtered. T0547 198 :GGI 1qtwA 148 :AGQ T0547 202 :SKFGL 1qtwA 152 :SNLGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=35179 # 1knwA.199.158 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 199 :GINSKFGLT 1knwA 159 :GENSKHGIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=35180 # 1qo7A.199.46 read from T0547.t2k.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)G199 (1qo7A)Q49 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1qo7A)G55 because S (epsilon) conformation "forbidden" or filtered. T0547 200 :INSKF 1qo7A 50 :ADGRF T0547 206 :LT 1qo7A 56 :IT Number of specific fragments extracted= 2 number of extra gaps= 2 total=35182 # 1gx5A.199.95 read from T0547.t2k.many.frag # found chain 1gx5A in template set T0547 199 :GINSKFGLT 1gx5A 96 :SAKSKFGYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35183 # 1pjhA.199.25 read from T0547.t2k.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)G199 (1pjhA)N26 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1pjhA)L30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1pjhA)A32 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :INS 1pjhA 27 :PDN T0547 204 :F 1pjhA 31 :N T0547 206 :LT 1pjhA 33 :LE Number of specific fragments extracted= 3 number of extra gaps= 3 total=35186 # 1cfr.199.7 read from T0547.t2k.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)N201 (1cfr)G10 because S (epsilon) conformation "forbidden" or filtered. T0547 199 :GI 1cfr 8 :GE T0547 202 :SKFGLT 1cfr 11 :NKYTIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=35188 # 7odcA.199.164 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 204 :FGLT 7odcA 170 :FGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35189 # 1h16A.199.560 read from T0547.t2k.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)T207 (1h16A)N569 because L (left) conformation "forbidden" or filtered. T0547 199 :GINSKFGL 1h16A 561 :GEYPQFGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=35190 # 1xmtA.199.43 read from T0547.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G199 (1xmtA)V44 because E (beta_S) conformation "forbidden" or filtered. T0547 200 :INSKFGLT 1xmtA 45 :PSFKRGLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=35191 # 1s95A.199.187 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 199 :G 1s95A 354 :G T0547 202 :SKFGLT 1s95A 357 :SEDGVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35193 # 1rqlA.199.205 read from T0547.t2k.many.frag # found chain 1rqlA in template set Warning: unaligning (T0547)G199 (1rqlA)L206 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1rqlA)S208 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :I 1rqlA 207 :G T0547 202 :SKFGLT 1rqlA 209 :SELGLT Number of specific fragments extracted= 2 number of extra gaps= 2 total=35195 # 1whsA.199.111 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)G199 (1whsA)T106 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1whsA)I110 Warning: unaligning (T0547)K203 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1whsA)I110 T0547 200 :IN 1whsA 107 :SS T0547 204 :FGLT 1whsA 111 :YTSG Number of specific fragments extracted= 2 number of extra gaps= 2 total=35197 # 1wddA.199.172 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)G199 (1wddA)T173 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wddA)P176 because C (cis) conformation "forbidden" or filtered. T0547 200 :IN 1wddA 174 :IK T0547 203 :KFGLT 1wddA 177 :KLGLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=35199 # 1lwbA.199.47 read from T0547.t2k.many.frag # found chain 1lwbA in training set Warning: unaligning (T0547)F204 (1lwbA)F53 because G (3-10) conformation "forbidden" or filtered. T0547 199 :GINSK 1lwbA 48 :APDNP T0547 205 :GLT 1lwbA 54 :GFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=35201 # 1tyv.199.95 read from T0547.t2k.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)G199 (1tyv)T208 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1tyv)L214 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :INSKF 1tyv 209 :DDNQW T0547 206 :LT 1tyv 215 :TD Number of specific fragments extracted= 2 number of extra gaps= 2 total=35203 # 1in0A.199.94 read from T0547.t2k.many.frag # found chain 1in0A in template set T0547 199 :GINSKFGLT 1in0A 95 :EIKLKQGIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35204 1bo1A expands to /projects/compbio/data/pdb/1bo1.pdb.gz 1bo1A:# 1bo1A.199.104 read from T0547.t2k.many.frag # adding 1bo1A to template set # found chain 1bo1A in template set T0547 199 :GINSKFGLT 1bo1A 105 :NLRERFGID Number of specific fragments extracted= 1 number of extra gaps= 0 total=35205 # 1u00A.199.108 read from T0547.t2k.many.frag # found chain 1u00A in template set Warning: unaligning (T0547)G199 (1u00A)Q497 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1u00A)S501 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE in next template residue (1u00A)L504 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE at template residue (1u00A)L504 T0547 200 :INS 1u00A 498 :VKP T0547 204 :F 1u00A 502 :Y T0547 207 :T 1u00A 505 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=35208 # 1e4fT.199.98 read from T0547.t2k.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)I200 (1e4fT)G100 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1e4fT)S105 because P (beta_P) conformation "forbidden" or filtered. T0547 199 :G 1e4fT 99 :F T0547 201 :NSKF 1e4fT 101 :EEKR T0547 206 :LT 1e4fT 106 :IT Number of specific fragments extracted= 3 number of extra gaps= 2 total=35211 # 1lvfA.199.72 read from T0547.t2k.many.frag # found chain 1lvfA in template set T0547 199 :GINSKFGLT 1lvfA 73 :ANPRKFNLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35212 # 1oygA.199.251 read from T0547.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)G199 (1oygA)F278 because G (3-10) conformation "forbidden" or filtered. T0547 200 :INSKFGLT 1oygA 279 :NKAYYGKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=35213 # 1t0bA.199.52 read from T0547.t2k.many.frag # found chain 1t0bA in training set Warning: unaligning (T0547)K203 (1t0bA)E54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1t0bA)H55 because L (left) conformation "forbidden" or filtered. T0547 199 :GINS 1t0bA 50 :LDEP T0547 205 :GLT 1t0bA 56 :GLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35215 # 1ir6A.199.70 read from T0547.t2k.many.frag # found chain 1ir6A in template set T0547 199 :GINSKFGLT 1ir6A 110 :RLEEGYGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35216 # 1senA.199.125 read from T0547.t2k.many.frag # found chain 1senA in training set T0547 199 :GINSKFGLT 1senA 134 :NPSYKYFYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35217 # 1oohA.199.17 read from T0547.t2k.many.frag # found chain 1oohA in training set Warning: unaligning (T0547)G199 (1oohA)G16 because G (3-10) conformation "forbidden" or filtered. T0547 200 :INSKFGLT 1oohA 17 :CAPKFKLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=35218 # 1wdaA.199.486 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G199 (1wdaA)P480 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1wdaA)R484 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1wdaA)K485 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L206 (1wdaA)F487 because Y (epsilon') conformation "forbidden" or filtered. T0547 200 :IN 1wdaA 481 :AP T0547 205 :G 1wdaA 486 :G T0547 207 :T 1wdaA 488 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=35221 1jihA expands to /projects/compbio/data/pdb/1jih.pdb.gz 1jihA:# 1jihA.199.63 read from T0547.t2k.many.frag # adding 1jihA to template set # found chain 1jihA in template set T0547 199 :GINSKFGLT 1jihA 64 :YAARKYGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35222 # 1nu7D.199.13 read from T0547.t2k.many.frag # found chain 1nu7D in template set Warning: unaligning (T0547)G205 (1nu7D)G19 because P (beta_P) conformation "forbidden" or filtered. T0547 199 :GINSKF 1nu7D 13 :NENSKY T0547 206 :LT 1nu7D 20 :TL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35224 # 1n4wA.199.388 read from T0547.t2k.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)G199 (1n4wA)T394 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1n4wA)D395 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE in next template residue (1n4wA)W401 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE at template residue (1n4wA)W401 T0547 201 :NSKF 1n4wA 396 :RAKL T0547 207 :T 1n4wA 402 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=35226 # 1xg4A.199.123 read from T0547.t2k.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)G199 (1xg4A)H125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1xg4A)P127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1xg4A)N128 because L (left) conformation "forbidden" or filtered. T0547 200 :I 1xg4A 126 :R T0547 203 :KFGLT 1xg4A 129 :KAIVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=35228 # 1vqoN.199.64 read from T0547.t2k.many.frag # found chain 1vqoN in template set T0547 199 :GINSKFGLT 1vqoN 64 :SDLAEYGWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35229 # 1knwA.200.159 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 200 :INSKFGLTS 1knwA 160 :ENSKHGIWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35230 # 1qo7A.200.47 read from T0547.t2k.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)G205 (1qo7A)G55 because S (epsilon) conformation "forbidden" or filtered. T0547 200 :INSKF 1qo7A 50 :ADGRF T0547 206 :LTS 1qo7A 56 :ITS Number of specific fragments extracted= 2 number of extra gaps= 1 total=35232 # 7odcA.200.165 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 204 :FGLTS 7odcA 170 :FGATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35233 # 1gx5A.200.96 read from T0547.t2k.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)F204 (1gx5A)F101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T207 (1gx5A)G104 because Y (epsilon') conformation "forbidden" or filtered. T0547 200 :INSK 1gx5A 97 :AKSK T0547 205 :GL 1gx5A 102 :GY T0547 208 :S 1gx5A 105 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=35236 # 1cfr.200.8 read from T0547.t2k.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)N201 (1cfr)G10 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1cfr)K12 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :I 1cfr 9 :E T0547 202 :S 1cfr 11 :N T0547 204 :FGLTS 1cfr 13 :YTINS Number of specific fragments extracted= 3 number of extra gaps= 2 total=35239 # 1wddA.200.173 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)N201 (1wddA)K175 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wddA)P176 because C (cis) conformation "forbidden" or filtered. T0547 200 :I 1wddA 174 :I T0547 203 :KFGLTS 1wddA 177 :KLGLSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35241 # 1s95A.200.188 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 202 :SKFGLTS 1s95A 357 :SEDGVTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35242 # 1pjhA.200.26 read from T0547.t2k.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)S202 (1pjhA)N29 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1pjhA)A32 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :IN 1pjhA 27 :PD T0547 203 :KF 1pjhA 30 :LN T0547 206 :LTS 1pjhA 33 :LEG Number of specific fragments extracted= 3 number of extra gaps= 2 total=35245 # 1rqlA.200.206 read from T0547.t2k.many.frag # found chain 1rqlA in template set T0547 200 :INSKFGLTS 1rqlA 207 :GSSELGLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35246 # 1in0A.200.95 read from T0547.t2k.many.frag # found chain 1in0A in template set T0547 200 :INSKFGLTS 1in0A 96 :IKLKQGIET Number of specific fragments extracted= 1 number of extra gaps= 0 total=35247 # 1bo1A.200.105 read from T0547.t2k.many.frag # found chain 1bo1A in template set T0547 200 :INSKFGLTS 1bo1A 106 :LRERFGIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35248 # 1xmtA.200.44 read from T0547.t2k.many.frag # found chain 1xmtA in training set T0547 200 :INSKFGLTS 1xmtA 45 :PSFKRGLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35249 # 1u00A.200.109 read from T0547.t2k.many.frag # found chain 1u00A in template set Warning: unaligning (T0547)K203 (1u00A)S501 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE in next template residue (1u00A)L504 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE at template residue (1u00A)L504 T0547 200 :INS 1u00A 498 :VKP T0547 204 :F 1u00A 502 :Y T0547 207 :TS 1u00A 505 :TD Number of specific fragments extracted= 3 number of extra gaps= 2 total=35252 # 1h16A.200.561 read from T0547.t2k.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)T207 (1h16A)N569 because L (left) conformation "forbidden" or filtered. T0547 200 :INSKFGL 1h16A 562 :EYPQFGN T0547 208 :S 1h16A 570 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=35254 # 1lwbA.200.48 read from T0547.t2k.many.frag # found chain 1lwbA in training set T0547 200 :INSKFGLTS 1lwbA 49 :PDNPFGFPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35255 # 1o82A.200.0 read from T0547.t2k.many.frag # found chain 1o82A in training set Warning: unaligning (T0547)I200 because first residue in template chain is (1o82A)M1 T0547 201 :NSKFGLTS 1o82A 2 :AKEFGIPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35256 # 1oygA.200.252 read from T0547.t2k.many.frag # found chain 1oygA in training set T0547 200 :INSKFGLTS 1oygA 279 :NKAYYGKST Number of specific fragments extracted= 1 number of extra gaps= 0 total=35257 # 1lvfA.200.73 read from T0547.t2k.many.frag # found chain 1lvfA in template set T0547 200 :INSKFGLTS 1lvfA 74 :NPRKFNLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35258 # 1ir6A.200.71 read from T0547.t2k.many.frag # found chain 1ir6A in template set T0547 200 :INSKFGLTS 1ir6A 111 :LEEGYGVLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=35259 # 1e4fT.200.99 read from T0547.t2k.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)I200 (1e4fT)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 201 :NSKFGLTS 1e4fT 101 :EEKRSITL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35260 # 1whsA.200.112 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1whsA)I110 Warning: unaligning (T0547)K203 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1whsA)I110 T0547 200 :IN 1whsA 107 :SS T0547 204 :FGLTS 1whsA 111 :YTSGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35262 # 1tyv.200.96 read from T0547.t2k.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)G205 (1tyv)L214 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :INSKF 1tyv 209 :DDNQW T0547 206 :LTS 1tyv 215 :TDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35264 1tv9A expands to /projects/compbio/data/pdb/1tv9.pdb.gz 1tv9A:Skipped atom 981, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 983, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 985, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 987, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 989, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 991, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 993, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 995, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 997, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 1459, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 1461, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 1463, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 1465, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 1467, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 1469, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 1952, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 1954, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 1956, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 1958, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 1960, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 1962, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 1964, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 1966, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 1968, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2304, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2306, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2308, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2310, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2312, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2314, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2316, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2318, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2320, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2322, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2347, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2349, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2351, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2353, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2355, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2357, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2359, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2361, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2363, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2703, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2705, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2707, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2709, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2711, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2713, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2715, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2717, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2719, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2721, because occupancy 0.500 <= existing 0.500 in 1tv9A Skipped atom 2723, because occupancy 0.500 <= existing 0.500 in 1tv9A # 1tv9A.200.99 read from T0547.t2k.many.frag # adding 1tv9A to template set # found chain 1tv9A in template set T0547 200 :INSKFGLTS 1tv9A 100 :LTRVSGIGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=35265 # 1t0bA.200.53 read from T0547.t2k.many.frag # found chain 1t0bA in training set T0547 200 :INSKFGLTS 1t0bA 51 :DEPEHGLTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35266 # 1ig0A.200.152 read from T0547.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0547)K203 (1ig0A)N156 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1ig0A)H157 because L (left) conformation "forbidden" or filtered. T0547 200 :INS 1ig0A 153 :LQS T0547 205 :GLTS 1ig0A 158 :GIEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35268 # 1oohA.200.18 read from T0547.t2k.many.frag # found chain 1oohA in training set T0547 200 :INSKFGLTS 1oohA 17 :CAPKFKLKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35269 # 1jkoC.200.26 read from T0547.t2k.many.frag # found chain 1jkoC in template set T0547 200 :INSKFGLTS 1jkoC 165 :LAIIFGIGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35270 # 1xg4A.200.124 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 200 :INSKFGLTS 1xg4A 126 :RPNKAIVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35271 # 1t8kA.200.27 read from T0547.t2k.many.frag # found chain 1t8kA in training set T0547 200 :INSKFGLTS 1t8kA 28 :FVEDLGADS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35272 # 1jihA.200.64 read from T0547.t2k.many.frag # found chain 1jihA in template set Warning: unaligning (T0547)T207 (1jihA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0547 200 :INSKFGL 1jihA 65 :AARKYGI T0547 208 :S 1jihA 73 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=35274 # 1qo7A.201.48 read from T0547.t2k.many.frag # found chain 1qo7A in training set T0547 201 :NSKFGLTST 1qo7A 51 :DGRFGITSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35275 # 1knwA.201.160 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G205 (1knwA)G165 because S (epsilon) conformation "forbidden" or filtered. T0547 201 :NSKF 1knwA 161 :NSKH T0547 206 :LTST 1knwA 166 :IWYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35277 # 7odcA.201.166 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 204 :FGLTST 7odcA 170 :FGATLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35278 # 1gx5A.201.97 read from T0547.t2k.many.frag # found chain 1gx5A in template set T0547 201 :NSKFGLTST 1gx5A 98 :KSKFGYGAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35279 # 1s95A.201.189 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 202 :SKFGLTST 1s95A 357 :SEDGVTLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=35280 # 1wddA.201.174 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)S202 (1wddA)P176 because C (cis) conformation "forbidden" or filtered. T0547 201 :N 1wddA 175 :K T0547 203 :KFGLTST 1wddA 177 :KLGLSAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=35282 # 1bo1A.201.106 read from T0547.t2k.many.frag # found chain 1bo1A in template set T0547 201 :NSKFGLTST 1bo1A 107 :RERFGIDDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35283 # 1in0A.201.96 read from T0547.t2k.many.frag # found chain 1in0A in template set T0547 201 :NSKFGLTST 1in0A 97 :KLKQGIETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35284 # 1tv9A.201.100 read from T0547.t2k.many.frag # found chain 1tv9A in template set T0547 201 :NSKFGLTST 1tv9A 101 :TRVSGIGPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35285 # 1rqlA.201.207 read from T0547.t2k.many.frag # found chain 1rqlA in template set T0547 201 :NSKFGLTST 1rqlA 208 :SSELGLTEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35286 # 1oygA.201.253 read from T0547.t2k.many.frag # found chain 1oygA in training set T0547 201 :NSKFGLTST 1oygA 280 :KAYYGKSTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35287 # 1pjhA.201.27 read from T0547.t2k.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)K203 (1pjhA)L30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1pjhA)N31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1pjhA)A32 because P (beta_P) conformation "forbidden" or filtered. T0547 201 :NS 1pjhA 28 :DN T0547 206 :LTST 1pjhA 33 :LEGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35289 # 1u00A.201.110 read from T0547.t2k.many.frag # found chain 1u00A in template set Warning: unaligning (T0547)N201 (1u00A)K499 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1u00A)S501 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE in next template residue (1u00A)L504 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE at template residue (1u00A)L504 T0547 202 :S 1u00A 500 :P T0547 204 :F 1u00A 502 :Y T0547 207 :TST 1u00A 505 :TDS Number of specific fragments extracted= 3 number of extra gaps= 3 total=35292 # 1o82A.201.1 read from T0547.t2k.many.frag # found chain 1o82A in training set T0547 201 :NSKFGLTST 1o82A 2 :AKEFGIPAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35293 # 1f74A.201.48 read from T0547.t2k.many.frag # found chain 1f74A in training set Warning: unaligning (T0547)N201 (1f74A)G49 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1f74A)E50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1f74A)M53 because G (3-10) conformation "forbidden" or filtered. T0547 203 :KF 1f74A 51 :NF T0547 206 :LTST 1f74A 54 :LSTE Number of specific fragments extracted= 2 number of extra gaps= 2 total=35295 # 1al3.201.178 read from T0547.t2k.many.frag # found chain 1al3 in training set Warning: unaligning (T0547)F204 (1al3)G182 because T (delta_L) conformation "forbidden" or filtered. T0547 201 :NSK 1al3 179 :ATK T0547 205 :GLTST 1al3 183 :SVSIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35297 # 1ir6A.201.72 read from T0547.t2k.many.frag # found chain 1ir6A in template set T0547 201 :NSKFGLTST 1ir6A 112 :EEGYGVLME Number of specific fragments extracted= 1 number of extra gaps= 0 total=35298 # 1t8kA.201.28 read from T0547.t2k.many.frag # found chain 1t8kA in training set T0547 201 :NSKFGLTST 1t8kA 29 :VEDLGADSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35299 # 1f1mA.201.107 read from T0547.t2k.many.frag # found chain 1f1mA in training set Warning: unaligning (T0547)G205 (1f1mA)G149 because N (gamma') conformation "forbidden" or filtered. T0547 201 :NSKF 1f1mA 145 :LGKE T0547 206 :LTST 1f1mA 150 :VTDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35301 # 1lvfA.201.74 read from T0547.t2k.many.frag # found chain 1lvfA in template set T0547 201 :NSKFGLTST 1lvfA 75 :PRKFNLDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35302 # 1e4fT.201.100 read from T0547.t2k.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)G205 (1e4fT)S105 because P (beta_P) conformation "forbidden" or filtered. T0547 201 :NSKF 1e4fT 101 :EEKR T0547 206 :LTST 1e4fT 106 :ITLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35304 # 1h16A.201.562 read from T0547.t2k.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)T207 (1h16A)N569 because L (left) conformation "forbidden" or filtered. T0547 201 :NSKFGL 1h16A 563 :YPQFGN T0547 208 :ST 1h16A 570 :DP Number of specific fragments extracted= 2 number of extra gaps= 1 total=35306 # 1cfr.201.9 read from T0547.t2k.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)N201 (1cfr)G10 because S (epsilon) conformation "forbidden" or filtered. T0547 202 :SKFGLTST 1cfr 11 :NKYTINSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35307 # 1jkoC.201.27 read from T0547.t2k.many.frag # found chain 1jkoC in template set T0547 201 :NSKFGLTST 1jkoC 166 :AIIFGIGVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35308 # 1xg4A.201.125 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 201 :NSKFGLTST 1xg4A 127 :PNKAIVSKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35309 # 1lwbA.201.49 read from T0547.t2k.many.frag # found chain 1lwbA in training set Warning: unaligning (T0547)F204 (1lwbA)F53 because G (3-10) conformation "forbidden" or filtered. T0547 201 :NSK 1lwbA 50 :DNP T0547 205 :GLTST 1lwbA 54 :GFPFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=35311 # 1o66A.201.54 read from T0547.t2k.many.frag # found chain 1o66A in training set Warning: unaligning (T0547)S202 (1o66A)S54 because Y (epsilon') conformation "forbidden" or filtered. T0547 201 :N 1o66A 53 :K T0547 203 :KFGLTST 1o66A 55 :TLPVSLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35313 # 1tbfA.201.187 read from T0547.t2k.many.frag # found chain 1tbfA in training set T0547 201 :NSKFGLTST 1tbfA 699 :QILSGLSIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35314 # 1fpoA.201.9 read from T0547.t2k.many.frag # found chain 1fpoA in training set Warning: unaligning (T0547)K203 (1fpoA)R12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1fpoA)Q14 because P (beta_P) conformation "forbidden" or filtered. T0547 201 :NS 1fpoA 10 :PA T0547 204 :F 1fpoA 13 :Y T0547 206 :LTST 1fpoA 15 :LDTQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=35317 1ppjB expands to /projects/compbio/data/pdb/1ppj.pdb.gz 1ppjB:# 1ppjB.201.180 read from T0547.t2k.many.frag # adding 1ppjB to template set # found chain 1ppjB in template set Warning: unaligning (T0547)K203 (1ppjB)I183 because P (beta_P) conformation "forbidden" or filtered. T0547 201 :NS 1ppjB 181 :YR T0547 204 :FGLTST 1ppjB 184 :GKVTPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35319 # 1qo7A.202.49 read from T0547.t2k.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)S202 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1qo7A)G55 because S (epsilon) conformation "forbidden" or filtered. T0547 203 :KF 1qo7A 53 :RF T0547 206 :LTSTE 1qo7A 56 :ITSEW Number of specific fragments extracted= 2 number of extra gaps= 2 total=35321 # 7odcA.202.167 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)G205 (7odcA)G171 because S (epsilon) conformation "forbidden" or filtered. T0547 204 :F 7odcA 170 :F T0547 206 :LTSTE 7odcA 172 :ATLKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35323 # 1knwA.202.161 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 202 :SKFGLTSTE 1knwA 162 :SKHGIWYTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35324 # 1bo1A.202.107 read from T0547.t2k.many.frag # found chain 1bo1A in template set T0547 202 :SKFGLTSTE 1bo1A 108 :ERFGIDDQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35325 # 1wddA.202.175 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)S202 (1wddA)P176 because C (cis) conformation "forbidden" or filtered. T0547 203 :KFGLTSTE 1wddA 177 :KLGLSAKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=35326 # 1s95A.202.190 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)K203 (1s95A)E358 because E (beta_S) conformation "forbidden" or filtered. T0547 202 :S 1s95A 357 :S T0547 204 :FGLTSTE 1s95A 359 :DGVTLDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35328 # 1in0A.202.97 read from T0547.t2k.many.frag # found chain 1in0A in template set Warning: unaligning (T0547)S202 (1in0A)L98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1in0A)G101 because S (epsilon) conformation "forbidden" or filtered. T0547 203 :KF 1in0A 99 :KQ T0547 206 :LTSTE 1in0A 102 :IETEM Number of specific fragments extracted= 2 number of extra gaps= 2 total=35330 # 1gx5A.202.98 read from T0547.t2k.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L206 (1gx5A)Y103 because Y (epsilon') conformation "forbidden" or filtered. T0547 202 :SKFG 1gx5A 99 :SKFG T0547 207 :TSTE 1gx5A 104 :GAKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35332 # 1tv9A.202.101 read from T0547.t2k.many.frag # found chain 1tv9A in template set T0547 202 :SKFGLTSTE 1tv9A 102 :RVSGIGPSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35333 # 1f74A.202.49 read from T0547.t2k.many.frag # found chain 1f74A in training set Warning: unaligning (T0547)S202 (1f74A)E50 because L (left) conformation "forbidden" or filtered. T0547 203 :KFGLTSTE 1f74A 51 :NFMLSTEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=35334 # 1u00A.202.111 read from T0547.t2k.many.frag # found chain 1u00A in template set Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE in next template residue (1u00A)L504 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE at template residue (1u00A)L504 T0547 202 :SKF 1u00A 500 :PSY T0547 207 :TSTE 1u00A 505 :TDSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35336 # 1oygA.202.254 read from T0547.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)L206 (1oygA)K285 because T (delta_L) conformation "forbidden" or filtered. T0547 202 :SKFG 1oygA 281 :AYYG T0547 207 :TSTE 1oygA 286 :STSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=35338 # 1o82A.202.2 read from T0547.t2k.many.frag # found chain 1o82A in training set T0547 202 :SKFGLTSTE 1o82A 3 :KEFGIPAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35339 # 1rqlA.202.208 read from T0547.t2k.many.frag # found chain 1rqlA in template set T0547 202 :SKFGLTSTE 1rqlA 209 :SELGLTEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35340 # 1fpoA.202.10 read from T0547.t2k.many.frag # found chain 1fpoA in training set Warning: unaligning (T0547)K203 (1fpoA)R12 because Y (epsilon') conformation "forbidden" or filtered. T0547 202 :S 1fpoA 11 :A T0547 204 :FGLTSTE 1fpoA 13 :YQLDTQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35342 # 1xg4A.202.126 read from T0547.t2k.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)S202 (1xg4A)N128 because L (left) conformation "forbidden" or filtered. T0547 203 :KFGLTSTE 1xg4A 129 :KAIVSKEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=35343 1szqA expands to /projects/compbio/data/pdb/1szq.pdb.gz 1szqA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1szqA.202.184 read from T0547.t2k.many.frag # adding 1szqA to template set # found chain 1szqA in template set T0547 202 :SKFGLTSTE 1szqA 185 :EMLGLTREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35344 # 1t8kA.202.29 read from T0547.t2k.many.frag # found chain 1t8kA in training set T0547 202 :SKFGLTSTE 1t8kA 30 :EDLGADSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35345 # 1u24A.202.143 read from T0547.t2k.many.frag # found chain 1u24A in template set T0547 202 :SKFGLTSTE 1u24A 144 :ANLGKSQHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35346 # 1ppjB.202.181 read from T0547.t2k.many.frag # found chain 1ppjB in template set T0547 202 :SKFGLTSTE 1ppjB 182 :RIGKVTPVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35347 # 1pjhA.202.28 read from T0547.t2k.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)K203 (1pjhA)L30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1pjhA)N31 because L (left) conformation "forbidden" or filtered. T0547 202 :S 1pjhA 29 :N T0547 205 :GLTSTE 1pjhA 32 :ALEGED Number of specific fragments extracted= 2 number of extra gaps= 1 total=35349 # 1f1mA.202.108 read from T0547.t2k.many.frag # found chain 1f1mA in training set Warning: unaligning (T0547)G205 (1f1mA)G149 because N (gamma') conformation "forbidden" or filtered. T0547 202 :SKF 1f1mA 146 :GKE T0547 206 :LTSTE 1f1mA 150 :VTDDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=35351 # 1al3.202.179 read from T0547.t2k.many.frag # found chain 1al3 in training set Warning: unaligning (T0547)F204 (1al3)G182 because T (delta_L) conformation "forbidden" or filtered. T0547 202 :SK 1al3 180 :TK T0547 205 :GLTSTE 1al3 183 :SVSIEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35353 1vquA expands to /projects/compbio/data/pdb/1vqu.pdb.gz 1vquA:Skipped atom 10, because occupancy 0.500 <= existing 0.500 in 1vquA Skipped atom 12, because occupancy 0.500 <= existing 0.500 in 1vquA Skipped atom 154, because occupancy 0.500 <= existing 0.500 in 1vquA Skipped atom 156, because occupancy 0.500 <= existing 0.500 in 1vquA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 609, because occupancy 0.500 <= existing 0.500 in 1vquA Skipped atom 611, because occupancy 0.500 <= existing 0.500 in 1vquA Skipped atom 613, because occupancy 0.500 <= existing 0.500 in 1vquA Skipped atom 615, because occupancy 0.500 <= existing 0.500 in 1vquA # 1vquA.202.163 read from T0547.t2k.many.frag # adding 1vquA to template set # found chain 1vquA in template set Warning: unaligning (T0547)F204 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vquA)G155 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vquA)G155 T0547 202 :SK 1vquA 152 :VN T0547 206 :LTSTE 1vquA 156 :ASPEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=35355 # 2aebA.202.247 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)K203 (2aebA)V249 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (2aebA)G250 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T209 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0547)E210 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 T0547 202 :S 2aebA 248 :V T0547 205 :GLTS 2aebA 251 :GLTY Number of specific fragments extracted= 2 number of extra gaps= 2 total=35357 # 1tbfA.202.188 read from T0547.t2k.many.frag # found chain 1tbfA in training set T0547 202 :SKFGLTSTE 1tbfA 700 :ILSGLSIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35358 # 1jkoC.202.28 read from T0547.t2k.many.frag # found chain 1jkoC in template set T0547 202 :SKFGLTSTE 1jkoC 167 :IIFGIGVST Number of specific fragments extracted= 1 number of extra gaps= 0 total=35359 2akaA expands to /projects/compbio/data/pdb/2aka.pdb.gz 2akaA:Skipped atom 968, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 970, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 972, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1767, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1769, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1771, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1773, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1867, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1869, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1871, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1873, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1875, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1877, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1879, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1915, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1917, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2071, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2073, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2436, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2438, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2440, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2442, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2444, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2503, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2505, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2507, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2509, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2511, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2590, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2592, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2651, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2653, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2655, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2657, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2659, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2661, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2663, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 3314, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 3316, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 3972, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 3974, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 3976, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 3978, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 3980, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4359, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4361, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4363, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4365, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4704, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4706, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4708, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4710, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4712, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4748, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4750, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4752, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4754, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4756, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4820, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4822, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4824, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4826, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4828, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4893, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4895, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4897, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4899, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4947, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4949, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4951, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5547, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5549, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5551, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5553, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5555, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5557, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5559, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5926, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5928, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5930, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5932, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 6155, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 6157, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 6159, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 6161, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 6163, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 6165, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 6167, because occupancy 0.500 <= existing 0.500 in 2akaA # 2akaA.202.390 read from T0547.t2k.many.frag # adding 2akaA to template set # found chain 2akaA in template set T0547 202 :SKFGLTSTE 2akaA 380 :TVFGVNPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35360 # 1lvaA.202.164 read from T0547.t2k.many.frag # found chain 1lvaA in template set Warning: unaligning (T0547)F204 (1lvaA)F543 because G (3-10) conformation "forbidden" or filtered. T0547 202 :SK 1lvaA 541 :GS T0547 205 :GLTSTE 1lvaA 544 :NLDPSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35362 # 1eokA.202.210 read from T0547.t2k.many.frag # found chain 1eokA in training set T0547 202 :SKFGLTSTE 1eokA 211 :QSYGANVSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35363 # 7odcA.203.168 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 204 :FGLTSTEL 7odcA 170 :FGATLKTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35364 # 1qo7A.203.50 read from T0547.t2k.many.frag # found chain 1qo7A in training set T0547 203 :KFGLTSTEL 1qo7A 53 :RFGITSEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35365 # 1in0A.203.98 read from T0547.t2k.many.frag # found chain 1in0A in template set T0547 203 :KFGLTSTEL 1in0A 99 :KQGIETEMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35366 # 1wddA.203.176 read from T0547.t2k.many.frag # found chain 1wddA in training set T0547 203 :KFGLTSTEL 1wddA 177 :KLGLSAKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35367 # 1tv9A.203.102 read from T0547.t2k.many.frag # found chain 1tv9A in template set T0547 203 :KFGLTSTEL 1tv9A 103 :VSGIGPSAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35368 # 1f74A.203.50 read from T0547.t2k.many.frag # found chain 1f74A in training set Warning: unaligning (T0547)G205 (1f74A)M53 because G (3-10) conformation "forbidden" or filtered. T0547 203 :KF 1f74A 51 :NF T0547 206 :LTSTEL 1f74A 54 :LSTEEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=35370 # 1knwA.203.162 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)T209 (1knwA)T169 because G (3-10) conformation "forbidden" or filtered. T0547 203 :KFGLTS 1knwA 163 :KHGIWY T0547 210 :EL 1knwA 170 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35372 # 1bo1A.203.108 read from T0547.t2k.many.frag # found chain 1bo1A in template set Warning: unaligning (T0547)F204 (1bo1A)F110 because G (3-10) conformation "forbidden" or filtered. T0547 203 :K 1bo1A 109 :R T0547 205 :GLTSTEL 1bo1A 111 :GIDDQDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35374 # 1s95A.203.191 read from T0547.t2k.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)K203 (1s95A)E358 because E (beta_S) conformation "forbidden" or filtered. T0547 204 :FGLTSTEL 1s95A 359 :DGVTLDDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=35375 # 1xg4A.203.127 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 203 :KFGLTSTEL 1xg4A 129 :KAIVSKEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=35376 # 1u00A.203.112 read from T0547.t2k.many.frag # found chain 1u00A in template set Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE in next template residue (1u00A)L504 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE at template residue (1u00A)L504 T0547 203 :KF 1u00A 501 :SY T0547 207 :TSTEL 1u00A 505 :TDSEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=35378 # 1gvfA.203.151 read from T0547.t2k.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)K203 because of BadResidue code BAD_PEPTIDE at template residue (1gvfA)A152 Warning: unaligning (T0547)F204 (1gvfA)F153 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1gvfA)L154 because E (beta_S) conformation "forbidden" or filtered. T0547 206 :LTSTEL 1gvfA 155 :TDPQEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35379 # 1t8kA.203.30 read from T0547.t2k.many.frag # found chain 1t8kA in training set Warning: unaligning (T0547)F204 (1t8kA)L32 because G (3-10) conformation "forbidden" or filtered. T0547 203 :K 1t8kA 31 :D T0547 205 :GLTSTEL 1t8kA 33 :GADSLDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35381 # 2bzgA.203.182 read from T0547.t2k.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)K203 (2bzgA)P196 because C (cis) conformation "forbidden" or filtered. T0547 204 :FGLTSTEL 2bzgA 197 :FYVPHAEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=35382 # 1pjhA.203.29 read from T0547.t2k.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)K203 (1pjhA)L30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1pjhA)N31 because L (left) conformation "forbidden" or filtered. T0547 205 :GLTSTEL 1pjhA 32 :ALEGEDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=35383 # 1fpoA.203.11 read from T0547.t2k.many.frag # found chain 1fpoA in training set Warning: unaligning (T0547)K203 (1fpoA)R12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1fpoA)Q14 because P (beta_P) conformation "forbidden" or filtered. T0547 204 :F 1fpoA 13 :Y T0547 206 :LTSTEL 1fpoA 15 :LDTQAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=35385 # 2aebA.203.248 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)F204 (2aebA)G250 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T209 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0547)E210 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 T0547 203 :K 2aebA 249 :V T0547 205 :GLTS 2aebA 251 :GLTY T0547 211 :L 2aebA 257 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=35388 # 1o82A.203.3 read from T0547.t2k.many.frag # found chain 1o82A in training set T0547 203 :KFGLTSTEL 1o82A 4 :EFGIPAAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35389 # 1ppjB.203.182 read from T0547.t2k.many.frag # found chain 1ppjB in template set T0547 203 :KFGLTSTEL 1ppjB 183 :IGKVTPVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35390 # 1szqA.203.185 read from T0547.t2k.many.frag # found chain 1szqA in template set T0547 203 :KFGLTSTEL 1szqA 186 :MLGLTREEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35391 # 1gx5A.203.99 read from T0547.t2k.many.frag # found chain 1gx5A in template set T0547 203 :KFGLTSTEL 1gx5A 100 :KFGYGAKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35392 # 1u24A.203.144 read from T0547.t2k.many.frag # found chain 1u24A in template set T0547 203 :KFGLTSTEL 1u24A 145 :NLGKSQHEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35393 # 1oygA.203.255 read from T0547.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)T207 (1oygA)S286 because Y (epsilon') conformation "forbidden" or filtered. T0547 203 :KFGL 1oygA 282 :YYGK T0547 208 :STEL 1oygA 287 :TSFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=35395 1ofcX expands to /projects/compbio/data/pdb/1ofc.pdb.gz 1ofcX:Skipped atom 750, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 751, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 752, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 753, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 754, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 755, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 756, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 938, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 939, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 940, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 941, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 942, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1434, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1435, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1436, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1437, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1438, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1439, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1440, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1732, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1733, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1734, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1735, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1818, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1819, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1820, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1821, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1822, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1823, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1824, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1854, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1855, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1856, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1857, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1858, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1859, because occupancy 0.500 <= existing 0.500 in 1ofcX # 1ofcX.203.139 read from T0547.t2k.many.frag # adding 1ofcX to template set # found chain 1ofcX in template set T0547 203 :KFGLTSTEL 1ofcX 827 :VEGKTPEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35396 # 1al3.203.180 read from T0547.t2k.many.frag # found chain 1al3 in training set Warning: unaligning (T0547)F204 (1al3)G182 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1al3)S183 because E (beta_S) conformation "forbidden" or filtered. T0547 203 :K 1al3 181 :K T0547 206 :LTSTEL 1al3 184 :VSIEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35398 # 1nkiA.203.65 read from T0547.t2k.many.frag # found chain 1nkiA in training set T0547 203 :KFGLTSTEL 1nkiA 66 :AFGIAAADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35399 # 1zbsA.203.173 read from T0547.t2k.many.frag # found chain 1zbsA in template set T0547 203 :KFGLTSTEL 1zbsA 174 :EYGLTSADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35400 1v4sA expands to /projects/compbio/data/pdb/1v4s.pdb.gz 1v4sA:# 1v4sA.203.11 read from T0547.t2k.many.frag # adding 1v4sA to template set # found chain 1v4sA in template set Warning: unaligning (T0547)G205 (1v4sA)Q24 because P (beta_P) conformation "forbidden" or filtered. T0547 203 :KF 1v4sA 22 :EF T0547 206 :LTSTEL 1v4sA 25 :LQEEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35402 # 1tbfA.203.189 read from T0547.t2k.many.frag # found chain 1tbfA in training set Warning: unaligning (T0547)G205 (1tbfA)G703 because G (3-10) conformation "forbidden" or filtered. T0547 203 :KF 1tbfA 701 :LS T0547 206 :LTSTEL 1tbfA 704 :LSIEEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35404 1b65A expands to /projects/compbio/data/pdb/1b65.pdb.gz 1b65A:# 1b65A.203.154 read from T0547.t2k.many.frag # adding 1b65A to template set # found chain 1b65A in template set Warning: unaligning (T0547)F204 (1b65A)F156 because L (left) conformation "forbidden" or filtered. T0547 203 :K 1b65A 155 :G T0547 205 :GLTSTEL 1b65A 157 :PVTEADV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35406 # 1wddA.204.177 read from T0547.t2k.many.frag # found chain 1wddA in training set T0547 204 :FGLTSTELI 1wddA 178 :LGLSAKNYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35407 # 7odcA.204.169 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 204 :FGLTSTELI 7odcA 170 :FGATLKTSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35408 # 1in0A.204.99 read from T0547.t2k.many.frag # found chain 1in0A in template set T0547 204 :FGLTSTELI 1in0A 100 :QGIETEMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35409 # 1f74A.204.51 read from T0547.t2k.many.frag # found chain 1f74A in training set T0547 204 :FGLTSTELI 1f74A 52 :FMLSTEEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35410 # 1oygA.204.256 read from T0547.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)L206 (1oygA)K285 because T (delta_L) conformation "forbidden" or filtered. T0547 204 :FG 1oygA 283 :YG T0547 207 :TSTELI 1oygA 286 :STSFFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35412 # 1xg4A.204.128 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 204 :FGLTSTELI 1xg4A 130 :AIVSKEEMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35413 # 1gvfA.204.152 read from T0547.t2k.many.frag # found chain 1gvfA in training set T0547 204 :FGLTSTELI 1gvfA 153 :FLTDPQEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35414 # 1tv9A.204.103 read from T0547.t2k.many.frag # found chain 1tv9A in template set T0547 204 :FGLTSTELI 1tv9A 104 :SGIGPSAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35415 # 1u00A.204.113 read from T0547.t2k.many.frag # found chain 1u00A in template set Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE in next template residue (1u00A)L504 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE at template residue (1u00A)L504 T0547 204 :F 1u00A 502 :Y T0547 207 :TSTELI 1u00A 505 :TDSEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35417 # 1o82A.204.4 read from T0547.t2k.many.frag # found chain 1o82A in training set T0547 204 :FGLTSTELI 1o82A 5 :FGIPAAVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35418 # 1u24A.204.145 read from T0547.t2k.many.frag # found chain 1u24A in template set T0547 204 :FGLTSTELI 1u24A 146 :LGKSQHEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35419 # 1s95A.204.192 read from T0547.t2k.many.frag # found chain 1s95A in training set T0547 204 :FGLTSTELI 1s95A 359 :DGVTLDDIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35420 # 1ofcX.204.140 read from T0547.t2k.many.frag # found chain 1ofcX in template set T0547 204 :FGLTSTELI 1ofcX 828 :EGKTPEEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35421 # 1szqA.204.186 read from T0547.t2k.many.frag # found chain 1szqA in template set T0547 204 :FGLTSTELI 1szqA 187 :LGLTREEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35422 # 1nkiA.204.66 read from T0547.t2k.many.frag # found chain 1nkiA in training set T0547 204 :FGLTSTELI 1nkiA 67 :FGIAAADFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35423 # 1fpoA.204.12 read from T0547.t2k.many.frag # found chain 1fpoA in training set T0547 204 :FGLTSTELI 1fpoA 13 :YQLDTQALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35424 # 1ujpA.204.71 read from T0547.t2k.many.frag # found chain 1ujpA in training set T0547 204 :FGLTSTELI 1ujpA 72 :KGMSVQGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35425 1zavA expands to /projects/compbio/data/pdb/1zav.pdb.gz 1zavA:Skipped atom 692, because occupancy 0.500 <= existing 0.500 in 1zavA Skipped atom 694, because occupancy 0.500 <= existing 0.500 in 1zavA Skipped atom 696, because occupancy 0.500 <= existing 0.500 in 1zavA Skipped atom 698, because occupancy 0.500 <= existing 0.500 in 1zavA Skipped atom 700, because occupancy 0.500 <= existing 0.500 in 1zavA Skipped atom 702, because occupancy 0.500 <= existing 0.500 in 1zavA Skipped atom 704, because occupancy 0.500 <= existing 0.500 in 1zavA Skipped atom 706, because occupancy 0.500 <= existing 0.500 in 1zavA # 1zavA.204.30 read from T0547.t2k.many.frag # adding 1zavA to template set # found chain 1zavA in template set T0547 204 :FGLTSTELI 1zavA 30 :LGFTVADLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35426 # 1tfzA.204.99 read from T0547.t2k.many.frag # found chain 1tfzA in training set T0547 204 :FGLTSTELI 1tfzA 100 :PSFDHGSCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35427 # 2bzgA.204.183 read from T0547.t2k.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)G205 (2bzgA)Y198 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L206 (2bzgA)V199 because D (zeta) conformation "forbidden" or filtered. T0547 204 :F 2bzgA 197 :F T0547 207 :TSTELI 2bzgA 200 :PHAEIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35429 # 1zp4A.204.183 read from T0547.t2k.many.frag # found chain 1zp4A in template set T0547 204 :FGLTSTELI 1zp4A 184 :FFFDVESYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35430 # 1rcqA.204.129 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 204 :FGLTSTELI 1rcqA 130 :VGFFPEDFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35431 # 1ppjB.204.183 read from T0547.t2k.many.frag # found chain 1ppjB in template set T0547 204 :FGLTSTELI 1ppjB 184 :GKVTPVELH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35432 # 2aebA.204.249 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)T209 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0547)E210 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 T0547 204 :FGLTS 2aebA 250 :GGLTY T0547 211 :LI 2aebA 257 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35434 # 1bo1A.204.109 read from T0547.t2k.many.frag # found chain 1bo1A in template set T0547 204 :FGLTSTELI 1bo1A 110 :FGIDDQDYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35435 # 1zbsA.204.174 read from T0547.t2k.many.frag # found chain 1zbsA in template set T0547 204 :FGLTSTELI 1zbsA 175 :YGLTSADII Number of specific fragments extracted= 1 number of extra gaps= 0 total=35436 # 1qo7A.204.51 read from T0547.t2k.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)F204 (1qo7A)F54 because G (3-10) conformation "forbidden" or filtered. T0547 205 :GLTSTELI 1qo7A 55 :GITSEWLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=35437 # 1vzyA.204.274 read from T0547.t2k.many.frag # found chain 1vzyA in template set Warning: unaligning (T0547)G205 (1vzyA)L276 because E (beta_S) conformation "forbidden" or filtered. T0547 204 :F 1vzyA 275 :Y T0547 206 :LTSTELI 1vzyA 277 :FTKEELE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35439 # 1eu1A.204.296 read from T0547.t2k.many.frag # found chain 1eu1A in training set T0547 204 :FGLTSTELI 1eu1A 297 :CGLPAEQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35440 # 1knwA.204.163 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 204 :FGLTSTELI 1knwA 164 :HGIWYTDLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=35441 # 1f74A.205.52 read from T0547.t2k.many.frag # found chain 1f74A in training set T0547 205 :GLTSTELIE 1f74A 53 :MLSTEEKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35442 # 1gvfA.205.153 read from T0547.t2k.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)G205 (1gvfA)L154 because E (beta_S) conformation "forbidden" or filtered. T0547 206 :LTSTELIE 1gvfA 155 :TDPQEAKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=35443 # 1xg4A.205.129 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 205 :GLTSTELIE 1xg4A 131 :IVSKEEMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35444 # 1eu1A.205.297 read from T0547.t2k.many.frag # found chain 1eu1A in training set T0547 205 :GLTSTELIE 1eu1A 298 :GLPAEQIRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35445 # 1tv9A.205.104 read from T0547.t2k.many.frag # found chain 1tv9A in template set T0547 205 :GLTSTELIE 1tv9A 105 :GIGPSAARK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35446 # 1rcqA.205.130 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 205 :GLTSTELIE 1rcqA 131 :GFFPEDFRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35447 # 1szqA.205.187 read from T0547.t2k.many.frag # found chain 1szqA in template set T0547 205 :GLTSTELIE 1szqA 188 :GLTREEILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35448 # 7odcA.205.170 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 205 :GLTSTELIE 7odcA 171 :GATLKTSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35449 # 2aebA.205.250 read from T0547.t2k.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)T209 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0547)E210 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 T0547 205 :GLTS 2aebA 251 :GLTY T0547 211 :LIE 2aebA 257 :GLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35451 # 1vquA.205.166 read from T0547.t2k.many.frag # found chain 1vquA in template set Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vquA)G155 T0547 206 :LTSTELIE 1vquA 156 :ASPEKVQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35452 # 2b8nA.205.146 read from T0547.t2k.many.frag # found chain 2b8nA in template set T0547 205 :GLTSTELIE 2b8nA 135 :GVSLEEIQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35453 # 1ofcX.205.141 read from T0547.t2k.many.frag # found chain 1ofcX in template set T0547 205 :GLTSTELIE 1ofcX 829 :GKTPEEVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35454 # 1ujpA.205.72 read from T0547.t2k.many.frag # found chain 1ujpA in training set T0547 205 :GLTSTELIE 1ujpA 73 :GMSVQGALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35455 # 1su0B.205.80 read from T0547.t2k.many.frag # found chain 1su0B in template set T0547 205 :GLTSTELIE 1su0B 81 :GKSKEEALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35456 # 1u00A.205.114 read from T0547.t2k.many.frag # found chain 1u00A in template set Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE in next template residue (1u00A)L504 Warning: unaligning (T0547)L206 because of BadResidue code BAD_PEPTIDE at template residue (1u00A)L504 T0547 207 :TSTELIE 1u00A 505 :TDSEIAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=35457 # 1wddA.205.178 read from T0547.t2k.many.frag # found chain 1wddA in training set T0547 205 :GLTSTELIE 1wddA 179 :GLSAKNYGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35458 2ajtA expands to /projects/compbio/data/pdb/2ajt.pdb.gz 2ajtA:# 2ajtA.205.53 read from T0547.t2k.many.frag # adding 2ajtA to template set # found chain 2ajtA in template set T0547 205 :GLTSTELIE 2ajtA 54 :GTTPDEITA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35459 # 1nkiA.205.67 read from T0547.t2k.many.frag # found chain 1nkiA in training set T0547 205 :GLTSTELIE 1nkiA 68 :GIAAADFAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35460 # 1ppjB.205.184 read from T0547.t2k.many.frag # found chain 1ppjB in template set T0547 205 :GLTSTELIE 1ppjB 185 :KVTPVELHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35461 # 1zp4A.205.184 read from T0547.t2k.many.frag # found chain 1zp4A in template set T0547 205 :GLTSTELIE 1zp4A 185 :FFDVESYLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35462 # 1rw1A.205.35 read from T0547.t2k.many.frag # found chain 1rw1A in training set Warning: unaligning (T0547)L206 (1rw1A)I38 because Y (epsilon') conformation "forbidden" or filtered. T0547 205 :G 1rw1A 37 :G T0547 207 :TSTELIE 1rw1A 39 :DREHLRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35464 # 1b65A.205.156 read from T0547.t2k.many.frag # found chain 1b65A in template set T0547 205 :GLTSTELIE 1b65A 157 :PVTEADVRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35465 # 1fpoA.205.13 read from T0547.t2k.many.frag # found chain 1fpoA in training set Warning: unaligning (T0547)G205 (1fpoA)Q14 because P (beta_P) conformation "forbidden" or filtered. T0547 206 :LTSTELIE 1fpoA 15 :LDTQALSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35466 # 1in0A.205.100 read from T0547.t2k.many.frag # found chain 1in0A in template set T0547 205 :GLTSTELIE 1in0A 101 :GIETEMAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35467 # 1gk9B.205.275 read from T0547.t2k.many.frag # found chain 1gk9B in training set T0547 205 :GLTSTELIE 1gk9B 276 :RLTADQAWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35468 # 1io0A.205.47 read from T0547.t2k.many.frag # found chain 1io0A in training set Warning: unaligning (T0547)G205 (1io0A)N207 because G (3-10) conformation "forbidden" or filtered. T0547 206 :LTSTELIE 1io0A 208 :IPVPTLKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35469 # 2cw6A.205.151 read from T0547.t2k.many.frag # found chain 2cw6A in template set Warning: unaligning (T0547)G205 (2cw6A)K179 because P (beta_P) conformation "forbidden" or filtered. T0547 206 :LTSTELIE 2cw6A 180 :ISPAKVAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=35470 # 1kqfA.205.380 read from T0547.t2k.many.frag # found chain 1kqfA in training set T0547 205 :GLTSTELIE 1kqfA 381 :GTPKADFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35471 # 1knwA.205.164 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 205 :GLTSTELIE 1knwA 165 :GIWYTDLPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35472 # 1zavA.205.31 read from T0547.t2k.many.frag # found chain 1zavA in template set T0547 205 :GLTSTELIE 1zavA 31 :GFTVADLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35473 # 1xg4A.206.130 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 206 :LTSTELIEA 1xg4A 132 :VSKEEMVDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35474 # 1rcqA.206.131 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 206 :LTSTELIEA 1rcqA 132 :FFPEDFRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35475 # 2cw6A.206.152 read from T0547.t2k.many.frag # found chain 2cw6A in template set T0547 206 :LTSTELIEA 2cw6A 180 :ISPAKVAEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35476 # 1eu1A.206.298 read from T0547.t2k.many.frag # found chain 1eu1A in training set T0547 206 :LTSTELIEA 1eu1A 299 :LPAEQIREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35477 # 1su0B.206.81 read from T0547.t2k.many.frag # found chain 1su0B in template set T0547 206 :LTSTELIEA 1su0B 82 :KSKEEALAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35478 # 1ofcX.206.142 read from T0547.t2k.many.frag # found chain 1ofcX in template set T0547 206 :LTSTELIEA 1ofcX 830 :KTPEEVIEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35479 # 2ajtA.206.54 read from T0547.t2k.many.frag # found chain 2ajtA in template set T0547 206 :LTSTELIEA 2ajtA 55 :TTPDEITAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35480 # 1kqfA.206.381 read from T0547.t2k.many.frag # found chain 1kqfA in training set T0547 206 :LTSTELIEA 1kqfA 382 :TPKADFLKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35481 1j1vA expands to /projects/compbio/data/pdb/1j1v.pdb.gz 1j1vA:# 1j1vA.206.58 read from T0547.t2k.many.frag # adding 1j1vA to template set # found chain 1j1vA in template set T0547 206 :LTSTELIEA 1j1vA 432 :RDHTTVLHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35482 # 1gk9B.206.276 read from T0547.t2k.many.frag # found chain 1gk9B in training set T0547 206 :LTSTELIEA 1gk9B 277 :LTADQAWDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35483 # 1szqA.206.188 read from T0547.t2k.many.frag # found chain 1szqA in template set T0547 206 :LTSTELIEA 1szqA 189 :LTREEILNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35484 1qtnA expands to /projects/compbio/data/pdb/1qtn.pdb.gz 1qtnA:Skipped atom 687, because occupancy 0.500 <= existing 0.500 in 1qtnA Skipped atom 757, because occupancy 0.500 <= existing 0.500 in 1qtnA # 1qtnA.206.76 read from T0547.t2k.many.frag # adding 1qtnA to template set # found chain 1qtnA in template set T0547 206 :LTSTELIEA 1qtnA 287 :CTVEQIYEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35485 # 1ppjB.206.185 read from T0547.t2k.many.frag # found chain 1ppjB in template set T0547 206 :LTSTELIEA 1ppjB 186 :VTPVELHDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35486 # 1v72A.206.156 read from T0547.t2k.many.frag # found chain 1v72A in template set T0547 206 :LTSTELIEA 1v72A 157 :YTLDEIEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35487 # 1zp4A.206.185 read from T0547.t2k.many.frag # found chain 1zp4A in template set T0547 206 :LTSTELIEA 1zp4A 186 :FDVESYLRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35488 # 2fnaA.206.208 read from T0547.t2k.many.frag # found chain 2fnaA in template set T0547 206 :LTSTELIEA 2fnaA 208 :FSREEAIEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35489 # 1vlpA.206.341 read from T0547.t2k.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)T207 (1vlpA)N331 because Y (epsilon') conformation "forbidden" or filtered. T0547 206 :L 1vlpA 330 :L T0547 208 :STELIEA 1vlpA 332 :VEKAITY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35491 # 1io0A.206.48 read from T0547.t2k.many.frag # found chain 1io0A in training set T0547 206 :LTSTELIEA 1io0A 208 :IPVPTLKAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=35492 # 1y9iA.206.22 read from T0547.t2k.many.frag # found chain 1y9iA in training set T0547 206 :LTSTELIEA 1y9iA 23 :VEIDDIAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35493 # 1f74A.206.53 read from T0547.t2k.many.frag # found chain 1f74A in training set T0547 206 :LTSTELIEA 1f74A 54 :LSTEEKKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35494 # 1wddS.206.20 read from T0547.t2k.many.frag # found chain 1wddS in training set T0547 206 :LTSTELIEA 1wddS 21 :LTVEDLLKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35495 1tv8A expands to /projects/compbio/data/pdb/1tv8.pdb.gz 1tv8A:# 1tv8A.206.49 read from T0547.t2k.many.frag # adding 1tv8A to template set # found chain 1tv8A in template set T0547 206 :LTSTELIEA 1tv8A 50 :LTFDEMARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35496 # 1g5aA.206.159 read from T0547.t2k.many.frag # found chain 1g5aA in training set T0547 206 :LTSTELIEA 1g5aA 160 :GTIGDLREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35497 # 2aeuA.206.155 read from T0547.t2k.many.frag # found chain 2aeuA in training set T0547 206 :LTSTELIEA 2aeuA 156 :IELENFKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35498 # 1px5A.206.163 read from T0547.t2k.many.frag # found chain 1px5A in training set T0547 206 :LTSTELIEA 1px5A 164 :PNPEIYVQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35499 # 1q2lA.206.658 read from T0547.t2k.many.frag # found chain 1q2lA in template set T0547 206 :LTSTELIEA 1q2lA 682 :ITLKEVLAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35500 # 1ujpA.206.73 read from T0547.t2k.many.frag # found chain 1ujpA in training set T0547 206 :LTSTELIEA 1ujpA 74 :MSVQGALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35501 # 1fpoA.206.14 read from T0547.t2k.many.frag # found chain 1fpoA in training set Warning: unaligning (T0547)L206 (1fpoA)L15 because Y (epsilon') conformation "forbidden" or filtered. T0547 207 :TSTELIEA 1fpoA 16 :DTQALSLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=35502 # 1vpqA.206.223 read from T0547.t2k.many.frag # found chain 1vpqA in template set T0547 206 :LTSTELIEA 1vpqA 212 :YSEEELKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35503 # 1gvfA.206.154 read from T0547.t2k.many.frag # found chain 1gvfA in training set T0547 206 :LTSTELIEA 1gvfA 155 :TDPQEAKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35504 # 1xg4A.207.131 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 207 :TSTELIEAV 1xg4A 133 :SKEEMVDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35505 # 1su0B.207.82 read from T0547.t2k.many.frag # found chain 1su0B in template set Warning: unaligning (T0547)T207 (1su0B)S83 because Y (epsilon') conformation "forbidden" or filtered. T0547 208 :STELIEAV 1su0B 84 :KEEALALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35506 # 1qtnA.207.77 read from T0547.t2k.many.frag # found chain 1qtnA in template set T0547 207 :TSTELIEAV 1qtnA 288 :TVEQIYEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35507 # 1vkmA.207.202 read from T0547.t2k.many.frag # found chain 1vkmA in template set T0547 207 :TSTELIEAV 1vkmA 191 :NVEEVLKIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35508 # 2ajtA.207.55 read from T0547.t2k.many.frag # found chain 2ajtA in template set T0547 207 :TSTELIEAV 2ajtA 56 :TPDEITAIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=35509 # 1vlpA.207.342 read from T0547.t2k.many.frag # found chain 1vlpA in training set T0547 207 :TSTELIEAV 1vlpA 331 :NVEKAITYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35510 # 1uslA.207.123 read from T0547.t2k.many.frag # found chain 1uslA in template set T0547 207 :TSTELIEAV 1uslA 116 :TVAEALAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35511 # 1ofcX.207.143 read from T0547.t2k.many.frag # found chain 1ofcX in template set T0547 207 :TSTELIEAV 1ofcX 831 :TPEEVIEYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35512 # 1gk9B.207.277 read from T0547.t2k.many.frag # found chain 1gk9B in training set T0547 207 :TSTELIEAV 1gk9B 278 :TADQAWDVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35513 # 1v72A.207.157 read from T0547.t2k.many.frag # found chain 1v72A in template set T0547 207 :TSTELIEAV 1v72A 158 :TLDEIEAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35514 # 1h05A.207.53 read from T0547.t2k.many.frag # found chain 1h05A in training set T0547 207 :TSTELIEAV 1h05A 54 :SEAQLLDWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35515 1colA expands to /projects/compbio/data/pdb/1col.pdb.gz 1colA:# 1colA.207.54 read from T0547.t2k.many.frag # adding 1colA to template set # found chain 1colA in template set T0547 207 :TSTELIEAV 1colA 55 :SFDDAMASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35516 # 1senA.207.134 read from T0547.t2k.many.frag # found chain 1senA in training set T0547 207 :TSTELIEAV 1senA 143 :SAEQVVQGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=35517 # 1q2lA.207.659 read from T0547.t2k.many.frag # found chain 1q2lA in template set T0547 207 :TSTELIEAV 1q2lA 683 :TLKEVLAYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35518 # 2fnaA.207.209 read from T0547.t2k.many.frag # found chain 2fnaA in template set T0547 207 :TSTELIEAV 2fnaA 209 :SREEAIEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35519 # 1ujpA.207.74 read from T0547.t2k.many.frag # found chain 1ujpA in training set T0547 207 :TSTELIEAV 1ujpA 75 :SVQGALELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35520 # 1kqfA.207.382 read from T0547.t2k.many.frag # found chain 1kqfA in training set T0547 207 :TSTELIEAV 1kqfA 383 :PKADFLKVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=35521 # 1tv8A.207.50 read from T0547.t2k.many.frag # found chain 1tv8A in template set T0547 207 :TSTELIEAV 1tv8A 51 :TFDEMARIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35522 1y3nA expands to /projects/compbio/data/pdb/1y3n.pdb.gz 1y3nA:# 1y3nA.207.155 read from T0547.t2k.many.frag # adding 1y3nA to template set # found chain 1y3nA in template set T0547 207 :TSTELIEAV 1y3nA 156 :TVDELYTVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35523 # 1ppjB.207.186 read from T0547.t2k.many.frag # found chain 1ppjB in template set T0547 207 :TSTELIEAV 1ppjB 187 :TPVELHDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35524 # 1eexG.207.131 read from T0547.t2k.many.frag # found chain 1eexG in training set T0547 207 :TSTELIEAV 1eexG 132 :TKEELLAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35525 # 1go3F.207.47 read from T0547.t2k.many.frag # found chain 1go3F in training set T0547 207 :TSTELIEAV 1go3F 48 :DKEEAKKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35526 # 1zp4A.207.186 read from T0547.t2k.many.frag # found chain 1zp4A in template set T0547 207 :TSTELIEAV 1zp4A 187 :DVESYLRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35527 # 1g5aA.207.160 read from T0547.t2k.many.frag # found chain 1g5aA in training set T0547 207 :TSTELIEAV 1g5aA 161 :TIGDLREVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35528 # 2dpmA.207.76 read from T0547.t2k.many.frag # found chain 2dpmA in training set T0547 207 :TSTELIEAV 2dpmA 77 :NPQELIEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35529 # 1gvfA.207.155 read from T0547.t2k.many.frag # found chain 1gvfA in training set T0547 207 :TSTELIEAV 1gvfA 156 :DPQEAKRFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35530 # 1eu1A.207.299 read from T0547.t2k.many.frag # found chain 1eu1A in training set T0547 207 :TSTELIEAV 1eu1A 300 :PAEQIRELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35531 # 2cw6A.207.153 read from T0547.t2k.many.frag # found chain 2cw6A in template set T0547 207 :TSTELIEAV 2cw6A 181 :SPAKVAEVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35532 # 1j1vA.207.59 read from T0547.t2k.many.frag # found chain 1j1vA in template set T0547 207 :TSTELIEAV 1j1vA 433 :DHTTVLHAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=35533 # 1wddS.207.21 read from T0547.t2k.many.frag # found chain 1wddS in training set T0547 207 :TSTELIEAV 1wddS 22 :TVEDLLKQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35534 # 1ofcX.208.144 read from T0547.t2k.many.frag # found chain 1ofcX in template set T0547 208 :STELIEAVN 1ofcX 832 :PEEVIEYNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35535 # 1xg4A.208.132 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 208 :STELIEAVN 1xg4A 134 :KEEMVDRIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35536 # 2ajtA.208.56 read from T0547.t2k.many.frag # found chain 2ajtA in template set T0547 208 :STELIEAVN 2ajtA 57 :PDEITAICR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35537 # 2cw6A.208.154 read from T0547.t2k.many.frag # found chain 2cw6A in template set T0547 208 :STELIEAVN 2cw6A 182 :PAKVAEVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35538 # 1su0B.208.83 read from T0547.t2k.many.frag # found chain 1su0B in template set T0547 208 :STELIEAVN 1su0B 84 :KEEALALAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35539 # 1vlpA.208.343 read from T0547.t2k.many.frag # found chain 1vlpA in training set T0547 208 :STELIEAVN 1vlpA 332 :VEKAITYSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35540 # 1qtnA.208.78 read from T0547.t2k.many.frag # found chain 1qtnA in template set T0547 208 :STELIEAVN 1qtnA 289 :VEQIYEILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35541 # 1v72A.208.158 read from T0547.t2k.many.frag # found chain 1v72A in template set T0547 208 :STELIEAVN 1v72A 159 :LDEIEAIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35542 # 1wyzA.208.69 read from T0547.t2k.many.frag # found chain 1wyzA in template set T0547 208 :STELIEAVN 1wyzA 70 :PEDISGYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35543 # 1g5aA.208.161 read from T0547.t2k.many.frag # found chain 1g5aA in training set T0547 208 :STELIEAVN 1g5aA 162 :IGDLREVIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35544 # 1na3A.208.58 read from T0547.t2k.many.frag # found chain 1na3A in training set T0547 208 :STELIEAVN 1na3A 54 :YDEAIEYYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35545 # 1vpqA.208.225 read from T0547.t2k.many.frag # found chain 1vpqA in template set T0547 208 :STELIEAVN 1vpqA 214 :EEELKTLFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35546 1tbxA expands to /projects/compbio/data/pdb/1tbx.pdb.gz 1tbxA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1tbxA.208.39 read from T0547.t2k.many.frag # adding 1tbxA to template set # found chain 1tbxA in template set T0547 208 :STELIEAVN 1tbxA 40 :TATFYDAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35547 # 1ujpA.208.75 read from T0547.t2k.many.frag # found chain 1ujpA in training set T0547 208 :STELIEAVN 1ujpA 76 :VQGALELVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35548 1yvvA expands to /projects/compbio/data/pdb/1yvv.pdb.gz 1yvvA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1yvvA.208.61 read from T0547.t2k.many.frag # adding 1yvvA to template set # found chain 1yvvA in template set T0547 208 :STELIEAVN 1yvvA 62 :DRRFATAVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35549 # 1go3F.208.48 read from T0547.t2k.many.frag # found chain 1go3F in training set T0547 208 :STELIEAVN 1go3F 49 :KEEAKKLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35550 # 1j1vA.208.60 read from T0547.t2k.many.frag # found chain 1j1vA in template set T0547 208 :STELIEAVN 1j1vA 434 :HTTVLHACR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35551 # 1qwgA.208.112 read from T0547.t2k.many.frag # found chain 1qwgA in training set T0547 208 :STELIEAVN 1qwgA 113 :LEERNNAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35552 # 1kqfA.208.383 read from T0547.t2k.many.frag # found chain 1kqfA in training set T0547 208 :STELIEAVN 1kqfA 384 :KADFLKVCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35553 # 1dljA.208.93 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 208 :STELIEAVN 1dljA 94 :TQHVETVIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35554 # 1kptA.208.62 read from T0547.t2k.many.frag # found chain 1kptA in training set T0547 208 :STELIEAVN 1kptA 63 :GTEACRHLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35555 # 1vkmA.208.203 read from T0547.t2k.many.frag # found chain 1vkmA in template set T0547 208 :STELIEAVN 1vkmA 192 :VEEVLKIYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35556 # 1zp4A.208.187 read from T0547.t2k.many.frag # found chain 1zp4A in template set T0547 208 :STELIEAVN 1zp4A 188 :VESYLRFRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35557 # 2b7nA.208.212 read from T0547.t2k.many.frag # found chain 2b7nA in template set T0547 208 :STELIEAVN 2b7nA 213 :VLETKEIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35558 # 2aeuA.208.157 read from T0547.t2k.many.frag # found chain 2aeuA in training set T0547 208 :STELIEAVN 2aeuA 158 :LENFKKVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35559 # 1gk9B.208.278 read from T0547.t2k.many.frag # found chain 1gk9B in training set T0547 208 :STELIEAVN 1gk9B 279 :ADQAWDVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35560 # 1uslA.208.124 read from T0547.t2k.many.frag # found chain 1uslA in template set T0547 208 :STELIEAVN 1uslA 117 :VAEALAIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35561 # 1y3nA.208.156 read from T0547.t2k.many.frag # found chain 1y3nA in template set T0547 208 :STELIEAVN 1y3nA 157 :VDELYTVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35562 # 1senA.208.135 read from T0547.t2k.many.frag # found chain 1senA in training set T0547 208 :STELIEAVN 1senA 144 :AEQVVQGMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35563 # 1fr2A.208.11 read from T0547.t2k.many.frag # found chain 1fr2A in training set T0547 208 :STELIEAVN 1fr2A 12 :EAEFLQLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35564 # 1dljA.209.94 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 209 :TELIEAVNL 1dljA 95 :QHVETVIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35565 # 1g5aA.209.162 read from T0547.t2k.many.frag # found chain 1g5aA in training set T0547 209 :TELIEAVNL 1g5aA 163 :GDLREVIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35566 # 1na3A.209.59 read from T0547.t2k.many.frag # found chain 1na3A in training set T0547 209 :TELIEAVNL 1na3A 55 :DEAIEYYQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35567 # 1ofcX.209.145 read from T0547.t2k.many.frag # found chain 1ofcX in template set T0547 209 :TELIEAVNL 1ofcX 833 :EEVIEYNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35568 # 1su0B.209.84 read from T0547.t2k.many.frag # found chain 1su0B in template set T0547 209 :TELIEAVNL 1su0B 85 :EEALALADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35569 # 1vlpA.209.344 read from T0547.t2k.many.frag # found chain 1vlpA in training set T0547 209 :TELIEAVNL 1vlpA 333 :EKAITYSHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35570 1xw8A expands to /projects/compbio/data/pdb/1xw8.pdb.gz 1xw8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xw8A.209.37 read from T0547.t2k.many.frag # adding 1xw8A to template set # found chain 1xw8A in template set T0547 209 :TELIEAVNL 1xw8A 38 :QIMQACVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35571 # 1ct5A.209.156 read from T0547.t2k.many.frag # found chain 1ct5A in template set T0547 209 :TELIEAVNL 1ct5A 158 :AEIFEVIDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35572 # 1v72A.209.159 read from T0547.t2k.many.frag # found chain 1v72A in template set T0547 209 :TELIEAVNL 1v72A 160 :DEIEAIGDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35573 # 1tbxA.209.40 read from T0547.t2k.many.frag # found chain 1tbxA in template set T0547 209 :TELIEAVNL 1tbxA 41 :ATFYDAKKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35574 # 1j1vA.209.61 read from T0547.t2k.many.frag # found chain 1j1vA in template set T0547 209 :TELIEAVNL 1j1vA 435 :TTVLHACRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35575 # 1qwgA.209.113 read from T0547.t2k.many.frag # found chain 1qwgA in training set T0547 209 :TELIEAVNL 1qwgA 114 :EERNNAIKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35576 # 2cw6A.209.155 read from T0547.t2k.many.frag # found chain 2cw6A in template set T0547 209 :TELIEAVNL 2cw6A 183 :AKVAEVTKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35577 # 1go3F.209.49 read from T0547.t2k.many.frag # found chain 1go3F in training set T0547 209 :TELIEAVNL 1go3F 50 :EEAKKLVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35578 # 1px5A.209.166 read from T0547.t2k.many.frag # found chain 1px5A in training set T0547 209 :TELIEAVNL 1px5A 167 :EIYVQLIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35579 # 1zp4A.209.188 read from T0547.t2k.many.frag # found chain 1zp4A in template set T0547 209 :TELIEAVNL 1zp4A 189 :ESYLRFRDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35580 # 2aeuA.209.158 read from T0547.t2k.many.frag # found chain 2aeuA in training set T0547 209 :TELIEAVNL 2aeuA 159 :ENFKKVINT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35581 1xcbA expands to /projects/compbio/data/pdb/1xcb.pdb.gz 1xcbA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xcbA.209.150 read from T0547.t2k.many.frag # adding 1xcbA to template set # found chain 1xcbA in template set T0547 209 :TELIEAVNL 1xcbA 151 :EAAQKAADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35582 # 1kqfA.209.384 read from T0547.t2k.many.frag # found chain 1kqfA in training set T0547 209 :TELIEAVNL 1kqfA 385 :ADFLKVCEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35583 # 1y3nA.209.157 read from T0547.t2k.many.frag # found chain 1y3nA in template set T0547 209 :TELIEAVNL 1y3nA 158 :DELYTVLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35584 # 1ujpA.209.76 read from T0547.t2k.many.frag # found chain 1ujpA in training set T0547 209 :TELIEAVNL 1ujpA 77 :QGALELVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35585 # 1qtnA.209.79 read from T0547.t2k.many.frag # found chain 1qtnA in template set T0547 209 :TELIEAVNL 1qtnA 290 :EQIYEILKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35586 # 1f74A.209.56 read from T0547.t2k.many.frag # found chain 1f74A in training set T0547 209 :TELIEAVNL 1f74A 57 :EEKKEIFRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35587 # 1kptA.209.63 read from T0547.t2k.many.frag # found chain 1kptA in training set T0547 209 :TELIEAVNL 1kptA 64 :TEACRHLTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35588 # 1hx0A.209.76 read from T0547.t2k.many.frag # found chain 1hx0A in training set T0547 209 :TELIEAVNL 1hx0A 77 :NEFRDMVTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35589 # 1rcqA.209.134 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 209 :TELIEAVNL 1rcqA 135 :EDFRAAHER Number of specific fragments extracted= 1 number of extra gaps= 0 total=35590 2b0lA expands to /projects/compbio/data/pdb/2b0l.pdb.gz 2b0lA:Skipped atom 32, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 34, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 36, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 38, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 40, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 42, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 44, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 46, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 48, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 50, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 123, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 125, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 127, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 129, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 131, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 133, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 135, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 137, because occupancy 0.200 <= existing 0.800 in 2b0lA # 2b0lA.209.57 read from T0547.t2k.many.frag # adding 2b0lA to template set # found chain 2b0lA in template set Warning: unaligning (T0547)E213 because of BadResidue code BAD_PEPTIDE in next template residue (2b0lA)A220 Warning: unaligning (T0547)A214 because of BadResidue code BAD_PEPTIDE at template residue (2b0lA)A220 T0547 209 :TELI 2b0lA 215 :SVIV T0547 215 :VNL 2b0lA 221 :LRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=35592 # 1xg4A.209.133 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 209 :TELIEAVNL 1xg4A 135 :EEMVDRIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35593 # 1ytlA.209.119 read from T0547.t2k.many.frag # found chain 1ytlA in training set T0547 209 :TELIEAVNL 1ytlA 120 :YHGSQMLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35594 # 1wddS.209.23 read from T0547.t2k.many.frag # found chain 1wddS in training set T0547 209 :TELIEAVNL 1wddS 24 :EDLLKQIEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35595 # 1ct5A.210.157 read from T0547.t2k.many.frag # found chain 1ct5A in template set T0547 210 :ELIEAVNLL 1ct5A 159 :EIFEVIDFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35596 # 1dljA.210.95 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 210 :ELIEAVNLL 1dljA 96 :HVETVIKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35597 # 1f74A.210.57 read from T0547.t2k.many.frag # found chain 1f74A in training set T0547 210 :ELIEAVNLL 1f74A 58 :EKKEIFRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35598 # 1g5aA.210.163 read from T0547.t2k.many.frag # found chain 1g5aA in training set T0547 210 :ELIEAVNLL 1g5aA 164 :DLREVIAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35599 # 1gci.210.103 read from T0547.t2k.many.frag # found chain 1gci in training set T0547 210 :ELIEAVNLL 1gci 106 :SIAQGLEWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35600 # 1go3F.210.50 read from T0547.t2k.many.frag # found chain 1go3F in training set T0547 210 :ELIEAVNLL 1go3F 51 :EAKKLVEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35601 # 1knwA.210.169 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 210 :ELIEAVNLL 1knwA 170 :DLPAALDVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35602 # 1na3A.210.60 read from T0547.t2k.many.frag # found chain 1na3A in training set T0547 210 :ELIEAVNLL 1na3A 56 :EAIEYYQKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35603 # 1ofcX.210.146 read from T0547.t2k.many.frag # found chain 1ofcX in template set T0547 210 :ELIEAVNLL 1ofcX 834 :EVIEYNAVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35604 1oltA expands to /projects/compbio/data/pdb/1olt.pdb.gz 1oltA:Skipped atom 35, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 36, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 37, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 38, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 39, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 40, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 41, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 42, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 127, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 128, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 129, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 130, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 131, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 132, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 133, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 134, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 135, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 136, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 137, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 138, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 146, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 147, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 148, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 149, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 150, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 151, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 152, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 159, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 160, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 161, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 162, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 163, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 164, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 280, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 281, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 282, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 283, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 284, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 285, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 286, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 287, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 288, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 350, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 351, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 352, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 353, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 354, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 355, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 356, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 357, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 358, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 359, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 360, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 361, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 362, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 363, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 364, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 365, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 366, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 367, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 368, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 369, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 370, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 371, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 400, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 401, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 402, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 403, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 404, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 405, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 406, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 407, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 408, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 582, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 584, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 585, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 586, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 587, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 596, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 597, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 598, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 599, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 600, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 601, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 602, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 603, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 613, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 614, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 615, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 616, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 617, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 618, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 619, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 620, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 621, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 869, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 870, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 871, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 872, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 873, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 874, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 875, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 876, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 877, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 878, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 879, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 912, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 913, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 914, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 915, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 916, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 917, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 918, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 919, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 920, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1078, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1079, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1080, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1081, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1082, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1083, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1084, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1085, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1095, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1096, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1097, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1098, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1099, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1100, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1101, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1102, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1103, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1214, because occupancy 0.700 <= existing 0.700 in 1oltA Skipped atom 1215, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1216, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1217, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1218, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1219, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1220, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1221, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1222, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1313, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1314, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1315, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1316, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1317, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1318, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1319, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1320, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1321, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1438, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1439, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1440, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1441, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1442, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1443, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1444, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1445, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1446, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1447, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1448, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1457, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1458, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1459, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1460, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1461, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1462, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1463, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1464, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 1571, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1572, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1573, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1574, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1575, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1576, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1577, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1578, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1579, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1580, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1581, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1719, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1720, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1721, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1722, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1723, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1724, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1725, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1726, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 1762, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1763, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1764, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1765, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1766, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1767, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1768, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1769, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1770, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1807, because occupancy 0.400 <= existing 0.600 in 1oltA Skipped atom 1808, because occupancy 0.400 <= existing 0.600 in 1oltA Skipped atom 1809, because occupancy 0.400 <= existing 0.600 in 1oltA Skipped atom 1810, because occupancy 0.400 <= existing 0.600 in 1oltA Skipped atom 1811, because occupancy 0.400 <= existing 0.600 in 1oltA Skipped atom 1812, because occupancy 0.400 <= existing 0.600 in 1oltA Skipped atom 1932, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1933, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1934, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1935, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1936, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1937, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1938, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1939, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 1940, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2009, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2010, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2011, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2012, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2013, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2014, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2015, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2016, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2017, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2018, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2019, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2020, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2021, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2022, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2023, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2024, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2025, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2026, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2048, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2049, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2050, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2051, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2052, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2053, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2054, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2055, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2056, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2099, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2100, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2101, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2102, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2103, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2104, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2105, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2106, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2107, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2108, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2109, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2207, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2208, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2209, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2210, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2211, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2212, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2213, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2214, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2265, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 2266, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 2267, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 2268, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 2269, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 2270, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 2271, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 2272, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 2273, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 2291, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2292, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2293, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2294, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2295, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2296, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2297, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2298, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2299, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2358, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2359, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2360, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2361, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2362, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2363, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2364, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2365, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2366, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2385, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2386, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2387, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2388, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2389, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2390, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2391, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2392, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2393, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2444, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2445, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2446, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2447, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2448, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2449, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2450, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2451, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2452, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2499, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2500, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2501, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2502, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2503, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2504, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2505, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2577, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2578, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2579, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2580, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2581, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2582, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2583, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2584, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2593, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2594, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2595, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2596, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2597, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2598, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2599, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2600, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2601, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2602, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2603, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2604, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2605, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2606, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2607, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2608, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 2646, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2647, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2648, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2649, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2650, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2651, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2652, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2653, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2654, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2655, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2656, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2672, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2673, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2674, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2675, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2676, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2677, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2678, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2679, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 2799, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2800, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2801, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2802, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2803, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2804, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2805, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2806, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2921, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2922, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2923, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2924, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2925, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2926, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2927, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 2928, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3011, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3012, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3013, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3014, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3015, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3016, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3017, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3018, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3019, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3020, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3021, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3022, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3063, because occupancy 0.200 <= existing 0.500 in 1oltA Skipped atom 3064, because occupancy 0.200 <= existing 0.500 in 1oltA Skipped atom 3065, because occupancy 0.200 <= existing 0.500 in 1oltA Skipped atom 3066, because occupancy 0.200 <= existing 0.500 in 1oltA Skipped atom 3067, because occupancy 0.200 <= existing 0.500 in 1oltA Skipped atom 3068, because occupancy 0.200 <= existing 0.500 in 1oltA Skipped atom 3069, because occupancy 0.200 <= existing 0.500 in 1oltA Skipped atom 3070, because occupancy 0.200 <= existing 0.500 in 1oltA Skipped atom 3071, because occupancy 0.200 <= existing 0.500 in 1oltA Skipped atom 3072, because occupancy 0.300 <= existing 0.500 in 1oltA Skipped atom 3073, because occupancy 0.300 <= existing 0.500 in 1oltA Skipped atom 3074, because occupancy 0.300 <= existing 0.500 in 1oltA Skipped atom 3075, because occupancy 0.300 <= existing 0.500 in 1oltA Skipped atom 3076, because occupancy 0.300 <= existing 0.500 in 1oltA Skipped atom 3077, because occupancy 0.300 <= existing 0.500 in 1oltA Skipped atom 3078, because occupancy 0.300 <= existing 0.500 in 1oltA Skipped atom 3079, because occupancy 0.300 <= existing 0.500 in 1oltA Skipped atom 3080, because occupancy 0.300 <= existing 0.500 in 1oltA Skipped atom 3090, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3091, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3092, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3093, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3094, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3095, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3096, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3097, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3098, because occupancy 0.200 <= existing 0.800 in 1oltA Skipped atom 3125, because occupancy 0.300 <= existing 0.800 in 1oltA Skipped atom 3126, because occupancy 0.300 <= existing 0.800 in 1oltA Skipped atom 3127, because occupancy 0.300 <= existing 0.800 in 1oltA Skipped atom 3128, because occupancy 0.300 <= existing 0.800 in 1oltA Skipped atom 3129, because occupancy 0.300 <= existing 0.800 in 1oltA Skipped atom 3130, because occupancy 0.300 <= existing 0.800 in 1oltA Skipped atom 3131, because occupancy 0.300 <= existing 0.800 in 1oltA Skipped atom 3132, because occupancy 0.300 <= existing 0.800 in 1oltA Skipped atom 3133, because occupancy 0.300 <= existing 0.800 in 1oltA Skipped atom 3271, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3272, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3273, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3274, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3275, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3276, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3277, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3278, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3310, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3311, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3312, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3313, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3314, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3315, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3316, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3317, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3318, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3319, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3320, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3351, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3352, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3353, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3354, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3355, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3356, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3357, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3358, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3435, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3436, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3437, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3438, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3439, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3440, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3441, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3442, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3479, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3480, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3481, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3482, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3483, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3484, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3485, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3486, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3487, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3488, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3489, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3490, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3491, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3492, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3493, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3494, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3495, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3496, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3497, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3498, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3499, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3500, because occupancy 0.330 <= existing 0.330 in 1oltA Skipped atom 3568, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3569, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3570, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3571, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3572, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3573, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3574, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3575, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3576, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3648, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3649, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3650, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3651, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3652, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3653, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3654, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3655, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3693, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3694, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3695, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3696, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3697, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3698, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3699, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3700, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3701, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3727, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3728, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3729, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3730, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3731, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3732, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3733, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3734, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3735, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3772, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3773, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3774, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3775, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3776, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3777, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3778, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3779, because occupancy 0.500 <= existing 0.500 in 1oltA Skipped atom 3934, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3935, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3936, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3937, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3938, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3939, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3940, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 3941, because occupancy 0.300 <= existing 0.700 in 1oltA Skipped atom 4051, because occupancy 0.400 <= existing 0.400 in 1oltA Skipped atom 4052, because occupancy 0.400 <= existing 0.400 in 1oltA Skipped atom 4053, because occupancy 0.400 <= existing 0.400 in 1oltA Skipped atom 4054, because occupancy 0.400 <= existing 0.400 in 1oltA Skipped atom 4055, because occupancy 0.400 <= existing 0.400 in 1oltA Skipped atom 4056, because occupancy 0.400 <= existing 0.400 in 1oltA Skipped atom 4057, because occupancy 0.400 <= existing 0.400 in 1oltA Skipped atom 4058, because occupancy 0.400 <= existing 0.400 in 1oltA # 1oltA.210.189 read from T0547.t2k.many.frag # adding 1oltA to template set # found chain 1oltA in template set T0547 210 :ELIEAVNLL 1oltA 190 :FIFALLNHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35605 # 1px5A.210.167 read from T0547.t2k.many.frag # found chain 1px5A in training set T0547 210 :ELIEAVNLL 1px5A 168 :IYVQLIKEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=35606 # 1qtnA.210.80 read from T0547.t2k.many.frag # found chain 1qtnA in template set T0547 210 :ELIEAVNLL 1qtnA 291 :QIYEILKIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35607 # 1rcqA.210.135 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 210 :ELIEAVNLL 1rcqA 136 :DFRAAHERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35608 # 1su0B.210.85 read from T0547.t2k.many.frag # found chain 1su0B in template set T0547 210 :ELIEAVNLL 1su0B 86 :EALALADIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35609 # 1vlpA.210.345 read from T0547.t2k.many.frag # found chain 1vlpA in training set T0547 210 :ELIEAVNLL 1vlpA 334 :KAITYSHAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35610 # 1xg4A.210.134 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 210 :ELIEAVNLL 1xg4A 136 :EMVDRIRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35611 # 1xw8A.210.38 read from T0547.t2k.many.frag # found chain 1xw8A in template set T0547 210 :ELIEAVNLL 1xw8A 39 :IMQACVREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35612 # 2cw6A.210.156 read from T0547.t2k.many.frag # found chain 2cw6A in template set T0547 210 :ELIEAVNLL 2cw6A 184 :KVAEVTKKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35613 # 2absA.210.196 read from T0547.t2k.many.frag # found chain 2absA in training set T0547 210 :ELIEAVNLL 2absA 177 :NALEVAGYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35614 # 1kptA.210.64 read from T0547.t2k.many.frag # found chain 1kptA in training set T0547 210 :ELIEAVNLL 1kptA 65 :EACRHLTNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35615 # 1v72A.210.160 read from T0547.t2k.many.frag # found chain 1v72A in template set T0547 210 :ELIEAVNLL 1v72A 161 :EIEAIGDVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=35616 # 1tbxA.210.41 read from T0547.t2k.many.frag # found chain 1tbxA in template set T0547 210 :ELIEAVNLL 1tbxA 42 :TFYDAKKFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35617 # 1vkmA.210.205 read from T0547.t2k.many.frag # found chain 1vkmA in template set T0547 210 :ELIEAVNLL 1vkmA 194 :EVLKIYESM Number of specific fragments extracted= 1 number of extra gaps= 0 total=35618 # 1qwgA.210.114 read from T0547.t2k.many.frag # found chain 1qwgA in training set T0547 210 :ELIEAVNLL 1qwgA 115 :ERNNAIKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35619 2aneA expands to /projects/compbio/data/pdb/2ane.pdb.gz 2aneA:# 2aneA.210.41 read from T0547.t2k.many.frag # adding 2aneA to template set # found chain 2aneA in template set T0547 210 :ELIEAVNLL 2aneA 35 :KSIRCLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35620 1drw expands to /projects/compbio/data/pdb/1drw.pdb.gz 1drw:Warning: there is no chain 1drw will retry with 1drwA # 1drw.210.83 read from T0547.t2k.many.frag # adding 1drw to template set # found chain 1drw in template set T0547 210 :ELIEAVNLL 1drw 84 :GTLNHLAFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=35621 # 1ytlA.210.120 read from T0547.t2k.many.frag # found chain 1ytlA in training set T0547 210 :ELIEAVNLL 1ytlA 121 :HGSQMLAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35622 # 1fobA.210.60 read from T0547.t2k.many.frag # found chain 1fobA in training set T0547 210 :ELIEAVNLL 1fobA 61 :YNLELAKRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35623 # 1kwgA.210.51 read from T0547.t2k.many.frag # found chain 1kwgA in training set T0547 210 :ELIEAVNLL 1kwgA 52 :WLDEAIATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35624 # 7odcA.210.175 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 210 :ELIEAVNLL 7odcA 176 :TSRLLLERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35625 # 1ct5A.211.158 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)K219 (1ct5A)L168 because G (3-10) conformation "forbidden" or filtered. T0547 211 :LIEAVNLL 1ct5A 160 :IFEVIDFF Number of specific fragments extracted= 1 number of extra gaps= 1 total=35626 # 1dljA.211.96 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 211 :LIEAVNLLK 1dljA 97 :VETVIKEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35627 # 1f74A.211.58 read from T0547.t2k.many.frag # found chain 1f74A in training set T0547 211 :LIEAVNLLK 1f74A 59 :KKEIFRIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35628 # 1g5aA.211.164 read from T0547.t2k.many.frag # found chain 1g5aA in training set T0547 211 :LIEAVNLLK 1g5aA 165 :LREVIAALH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35629 # 1go3F.211.51 read from T0547.t2k.many.frag # found chain 1go3F in training set T0547 211 :LIEAVNLLK 1go3F 52 :AKKLVEELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35630 # 1hx0A.211.78 read from T0547.t2k.many.frag # found chain 1hx0A in training set T0547 211 :LIEAVNLLK 1hx0A 79 :FRDMVTRCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35631 # 1knwA.211.170 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 211 :LIEAVNLLK 1knwA 171 :LPAALDVIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35632 # 1kptA.211.65 read from T0547.t2k.many.frag # found chain 1kptA in training set T0547 211 :LIEAVNLLK 1kptA 66 :ACRHLTNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35633 # 1na3A.211.61 read from T0547.t2k.many.frag # found chain 1na3A in training set T0547 211 :LIEAVNLLK 1na3A 57 :AIEYYQKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35634 # 1ofcX.211.147 read from T0547.t2k.many.frag # found chain 1ofcX in template set T0547 211 :LIEAVNLLK 1ofcX 835 :VIEYNAVFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=35635 # 1oltA.211.190 read from T0547.t2k.many.frag # found chain 1oltA in template set T0547 211 :LIEAVNLLK 1oltA 191 :IFALLNHAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35636 # 1px5A.211.168 read from T0547.t2k.many.frag # found chain 1px5A in training set T0547 211 :LIEAVNLLK 1px5A 169 :YVQLIKECK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35637 # 1qtnA.211.81 read from T0547.t2k.many.frag # found chain 1qtnA in template set T0547 211 :LIEAVNLLK 1qtnA 292 :IYEILKIYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35638 # 1rcqA.211.136 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 211 :LIEAVNLLK 1rcqA 137 :FRAAHERLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35639 # 1xg4A.211.135 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 211 :LIEAVNLLK 1xg4A 137 :MVDRIRAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35640 # 1xw8A.211.39 read from T0547.t2k.many.frag # found chain 1xw8A in template set T0547 211 :LIEAVNLLK 1xw8A 40 :MQACVREAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35641 # 1ytlA.211.121 read from T0547.t2k.many.frag # found chain 1ytlA in training set T0547 211 :LIEAVNLLK 1ytlA 122 :GSQMLAAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35642 # 2absA.211.197 read from T0547.t2k.many.frag # found chain 2absA in training set T0547 211 :LIEAVNLLK 2absA 178 :ALEVAGYAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35643 # 2cw6A.211.157 read from T0547.t2k.many.frag # found chain 2cw6A in template set T0547 211 :LIEAVNLLK 2cw6A 185 :VAEVTKKFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35644 # 7odcA.211.176 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 211 :LIEAVNLLK 7odcA 177 :SRLLLERAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35645 # 1tbxA.211.42 read from T0547.t2k.many.frag # found chain 1tbxA in template set T0547 211 :LIEAVNLLK 1tbxA 43 :FYDAKKFLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35646 # 1qwgA.211.115 read from T0547.t2k.many.frag # found chain 1qwgA in training set T0547 211 :LIEAVNLLK 1qwgA 116 :RNNAIKRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35647 # 1drw.211.84 read from T0547.t2k.many.frag # found chain 1drw in template set T0547 211 :LIEAVNLLK 1drw 85 :TLNHLAFCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35648 # 1fobA.211.61 read from T0547.t2k.many.frag # found chain 1fobA in training set T0547 211 :LIEAVNLLK 1fobA 62 :NLELAKRVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35649 # 1kwgA.211.52 read from T0547.t2k.many.frag # found chain 1kwgA in training set T0547 211 :LIEAVNLLK 1kwgA 53 :LDEAIATLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35650 # 1d8wA.211.121 read from T0547.t2k.many.frag # found chain 1d8wA in training set T0547 211 :LIEAVNLLK 1d8wA 123 :FKNWVEWAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35651 # 1vkmA.211.206 read from T0547.t2k.many.frag # found chain 1vkmA in template set T0547 211 :LIEAVNLLK 1vkmA 195 :VLKIYESMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35652 # 1gci.211.104 read from T0547.t2k.many.frag # found chain 1gci in training set T0547 211 :LIEAVNLLK 1gci 107 :IAQGLEWAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35653 # 1zp4A.211.190 read from T0547.t2k.many.frag # found chain 1zp4A in template set T0547 211 :LIEAVNLLK 1zp4A 191 :YLRFRDRCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35654 # 1vlpA.211.346 read from T0547.t2k.many.frag # found chain 1vlpA in training set T0547 211 :LIEAVNLLK 1vlpA 335 :AITYSHAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35655 # 1dljA.212.97 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 212 :IEAVNLLKE 1dljA 98 :ETVIKEVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35656 # 1g5aA.212.165 read from T0547.t2k.many.frag # found chain 1g5aA in training set T0547 212 :IEAVNLLKE 1g5aA 166 :REVIAALHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35657 # 1go3F.212.52 read from T0547.t2k.many.frag # found chain 1go3F in training set T0547 212 :IEAVNLLKE 1go3F 53 :KKLVEELIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35658 # 1px5A.212.169 read from T0547.t2k.many.frag # found chain 1px5A in training set T0547 212 :IEAVNLLKE 1px5A 170 :VQLIKECKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35659 # 1rcqA.212.137 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 212 :IEAVNLLKE 1rcqA 138 :RAAHERLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35660 # 1xw8A.212.40 read from T0547.t2k.many.frag # found chain 1xw8A in template set T0547 212 :IEAVNLLKE 1xw8A 41 :QACVREAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35661 # 7odcA.212.177 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 212 :IEAVNLLKE 7odcA 178 :RLLLERAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35662 # 1qwgA.212.116 read from T0547.t2k.many.frag # found chain 1qwgA in training set T0547 212 :IEAVNLLKE 1qwgA 117 :NNAIKRAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35663 # 1drw.212.85 read from T0547.t2k.many.frag # found chain 1drw in template set T0547 212 :IEAVNLLKE 1drw 86 :LNHLAFCRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35664 # 1kwgA.212.53 read from T0547.t2k.many.frag # found chain 1kwgA in training set T0547 212 :IEAVNLLKE 1kwgA 54 :DEAIATLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35665 # 1zp4A.212.191 read from T0547.t2k.many.frag # found chain 1zp4A in template set T0547 212 :IEAVNLLKE 1zp4A 192 :LRFRDRCVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35666 # 1d8wA.212.122 read from T0547.t2k.many.frag # found chain 1d8wA in training set T0547 212 :IEAVNLLKE 1d8wA 124 :KNWVEWAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35667 # 1vkmA.212.207 read from T0547.t2k.many.frag # found chain 1vkmA in template set T0547 212 :IEAVNLLKE 1vkmA 196 :LKIYESMKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35668 # 1xg4A.212.136 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 212 :IEAVNLLKE 1xg4A 138 :VDRIRAAVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35669 # 1fobA.212.62 read from T0547.t2k.many.frag # found chain 1fobA in training set T0547 212 :IEAVNLLKE 1fobA 63 :LELAKRVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35670 # 2b0lA.212.60 read from T0547.t2k.many.frag # found chain 2b0lA in template set Warning: unaligning (T0547)E213 because of BadResidue code BAD_PEPTIDE in next template residue (2b0lA)A220 Warning: unaligning (T0547)A214 because of BadResidue code BAD_PEPTIDE at template residue (2b0lA)A220 T0547 212 :I 2b0lA 218 :V T0547 215 :VNLLKE 2b0lA 221 :LRKLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=35672 # 1ct5A.212.159 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)E220 (1ct5A)S169 because P (beta_P) conformation "forbidden" or filtered. T0547 212 :IEAVNLLK 1ct5A 161 :FEVIDFFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35673 1reqB expands to /projects/compbio/data/pdb/1req.pdb.gz 1reqB:# 1reqB.212.496 read from T0547.t2k.many.frag # adding 1reqB to template set # found chain 1reqB in template set T0547 212 :IEAVNLLKE 1reqB 498 :EQLMDRSTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35674 # 1qtnA.212.82 read from T0547.t2k.many.frag # found chain 1qtnA in template set T0547 212 :IEAVNLLKE 1qtnA 293 :YEILKIYQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35675 # 1h05A.212.58 read from T0547.t2k.many.frag # found chain 1h05A in training set T0547 212 :IEAVNLLKE 1h05A 59 :LDWIHQAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35676 # 1i1wA.212.66 read from T0547.t2k.many.frag # found chain 1i1wA in training set T0547 212 :IEAVNLLKE 1i1wA 67 :DYLVNWAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35677 # 1oltA.212.191 read from T0547.t2k.many.frag # found chain 1oltA in template set T0547 212 :IEAVNLLKE 1oltA 192 :FALLNHARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35678 # 1yx1A.212.144 read from T0547.t2k.many.frag # found chain 1yx1A in training set T0547 212 :IEAVNLLKE 1yx1A 143 :ERFFRLAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=35679 # 1ytlA.212.122 read from T0547.t2k.many.frag # found chain 1ytlA in training set T0547 212 :IEAVNLLKE 1ytlA 123 :SQMLAAIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35680 # 1p1mA.212.183 read from T0547.t2k.many.frag # found chain 1p1mA in training set T0547 212 :IEAVNLLKE 1p1mA 184 :KRVFDTAKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35681 # 1na3A.212.62 read from T0547.t2k.many.frag # found chain 1na3A in training set T0547 212 :IEAVNLLKE 1na3A 58 :IEYYQKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35682 # 1wb4A.212.236 read from T0547.t2k.many.frag # found chain 1wb4A in training set T0547 212 :IEAVNLLKE 1wb4A 1025 :NPQIEAMKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35683 # 1fcqA.212.283 read from T0547.t2k.many.frag # found chain 1fcqA in training set T0547 212 :IEAVNLLKE 1fcqA 284 :EATLRKITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35684 # 2aeuA.212.161 read from T0547.t2k.many.frag # found chain 2aeuA in training set T0547 212 :IEAVNLLKE 2aeuA 162 :KKVINTAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35685 # 1hx0A.212.79 read from T0547.t2k.many.frag # found chain 1hx0A in training set T0547 212 :IEAVNLLKE 1hx0A 80 :RDMVTRCNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35686 # 1g5aA.213.166 read from T0547.t2k.many.frag # found chain 1g5aA in training set T0547 213 :EAVNLLKEN 1g5aA 167 :EVIAALHEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35687 # 1go3F.213.53 read from T0547.t2k.many.frag # found chain 1go3F in training set T0547 213 :EAVNLLKEN 1go3F 54 :KLVEELISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35688 # 1oltA.213.192 read from T0547.t2k.many.frag # found chain 1oltA in template set T0547 213 :EAVNLLKEN 1oltA 193 :ALLNHAREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35689 # 1px5A.213.170 read from T0547.t2k.many.frag # found chain 1px5A in training set T0547 213 :EAVNLLKEN 1px5A 171 :QLIKECKSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35690 # 1rcqA.213.138 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 T0547 213 :EAVNLLKE 1rcqA 139 :AAHERLRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35691 # 1xw8A.213.41 read from T0547.t2k.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)N221 (1xw8A)N50 because G (3-10) conformation "forbidden" or filtered. T0547 213 :EAVNLLKE 1xw8A 42 :ACVREAIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=35692 # 7odcA.213.178 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N221 (7odcA)L187 because G (3-10) conformation "forbidden" or filtered. T0547 213 :EAVNLLKE 7odcA 179 :LLLERAKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=35693 # 1vkmA.213.208 read from T0547.t2k.many.frag # found chain 1vkmA in template set T0547 213 :EAVNLLKEN 1vkmA 197 :KIYESMKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=35694 # 1qwgA.213.117 read from T0547.t2k.many.frag # found chain 1qwgA in training set T0547 213 :EAVNLLKEN 1qwgA 118 :NAIKRAKDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35695 # 1i1wA.213.67 read from T0547.t2k.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)N221 (1i1wA)N76 because G (3-10) conformation "forbidden" or filtered. T0547 213 :EAVNLLKE 1i1wA 68 :YLVNWAQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=35696 # 1dljA.213.98 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 213 :EAVNLLKEN 1dljA 99 :TVIKEVLSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35697 # 1fobA.213.63 read from T0547.t2k.many.frag # found chain 1fobA in training set T0547 213 :EAVNLLKEN 1fobA 64 :ELAKRVKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35698 # 1drw.213.86 read from T0547.t2k.many.frag # found chain 1drw in template set T0547 213 :EAVNLLKEN 1drw 87 :NHLAFCRQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35699 # 1kwgA.213.54 read from T0547.t2k.many.frag # found chain 1kwgA in training set T0547 213 :EAVNLLKEN 1kwgA 55 :EAIATLAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35700 # 1zp4A.213.192 read from T0547.t2k.many.frag # found chain 1zp4A in template set T0547 213 :EAVNLLKEN 1zp4A 193 :RFRDRCVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35701 # 1d8wA.213.123 read from T0547.t2k.many.frag # found chain 1d8wA in training set T0547 213 :EAVNLLKEN 1d8wA 125 :NWVEWAKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35702 # 1xg4A.213.137 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 213 :EAVNLLKEN 1xg4A 139 :DRIRAAVDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35703 # 1h05A.213.59 read from T0547.t2k.many.frag # found chain 1h05A in training set T0547 213 :EAVNLLKEN 1h05A 60 :DWIHQAADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35704 # 2b0lA.213.61 read from T0547.t2k.many.frag # found chain 2b0lA in template set Warning: unaligning (T0547)E213 because of BadResidue code BAD_PEPTIDE in next template residue (2b0lA)A220 Warning: unaligning (T0547)A214 because of BadResidue code BAD_PEPTIDE at template residue (2b0lA)A220 T0547 215 :VNLLKEN 2b0lA 221 :LRKLESA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35705 # 1nkiA.213.75 read from T0547.t2k.many.frag # found chain 1nkiA in training set T0547 213 :EAVNLLKEN 1nkiA 76 :RFAAQLRAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35706 # 1knwA.213.172 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 213 :EAVNLLKEN 1knwA 173 :AALDVIQRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35707 # 1hx0A.213.80 read from T0547.t2k.many.frag # found chain 1hx0A in training set T0547 213 :EAVNLLKEN 1hx0A 81 :DMVTRCNNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35708 # 1gci.213.106 read from T0547.t2k.many.frag # found chain 1gci in training set T0547 213 :EAVNLLKEN 1gci 109 :QGLEWAGNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35709 # 2absA.213.199 read from T0547.t2k.many.frag # found chain 2absA in training set T0547 213 :EAVNLLKEN 2absA 180 :EVAGYAHGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35710 # 1p1mA.213.184 read from T0547.t2k.many.frag # found chain 1p1mA in training set T0547 213 :EAVNLLKEN 1p1mA 185 :RVFDTAKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35711 # 1yx1A.213.145 read from T0547.t2k.many.frag # found chain 1yx1A in training set T0547 213 :EAVNLLKEN 1yx1A 144 :RFFRLAERQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35712 # 1byi.213.156 read from T0547.t2k.many.frag # found chain 1byi in training set T0547 213 :EAVNLLKEN 1byi 157 :LTAQVIQHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35713 # 1y7tA.213.51 read from T0547.t2k.many.frag # found chain 1y7tA in training set T0547 213 :EAVNLLKEN 1y7tA 51 :GVVMELEDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=35714 # 2aeuA.213.162 read from T0547.t2k.many.frag # found chain 2aeuA in training set T0547 213 :EAVNLLKEN 2aeuA 163 :KVINTAKNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35715 # 1fcqA.213.284 read from T0547.t2k.many.frag # found chain 1fcqA in training set T0547 213 :EAVNLLKEN 1fcqA 285 :ATLRKITDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35716 # 1rcqA.214.139 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 214 :AVNLLKE 1rcqA 140 :AHERLRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35717 # 1d8wA.214.124 read from T0547.t2k.many.frag # found chain 1d8wA in training set Warning: unaligning (T0547)K222 (1d8wA)Q134 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1d8wA 126 :WVEWAKAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=35718 # 1zp4A.214.193 read from T0547.t2k.many.frag # found chain 1zp4A in template set T0547 214 :AVNLLKENK 1zp4A 194 :FRDRCVSAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35719 # 1fobA.214.64 read from T0547.t2k.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)N221 (1fobA)A72 because G (3-10) conformation "forbidden" or filtered. T0547 214 :AVNLLKE 1fobA 65 :LAKRVKA T0547 222 :K 1fobA 73 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=35721 # 1i1wA.214.68 read from T0547.t2k.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)N221 (1i1wA)N76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1i1wA)G77 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKE 1i1wA 69 :LVNWAQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=35722 # 1g5aA.214.167 read from T0547.t2k.many.frag # found chain 1g5aA in training set Warning: unaligning (T0547)K222 (1g5aA)G176 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1g5aA 168 :VIAALHEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35723 # 1xw8A.214.42 read from T0547.t2k.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)K222 (1xw8A)G51 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1xw8A 43 :CVREAIKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=35724 # 7odcA.214.179 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K222 (7odcA)N188 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 7odcA 180 :LLERAKEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35725 # 1px5A.214.171 read from T0547.t2k.many.frag # found chain 1px5A in training set Warning: unaligning (T0547)K222 (1px5A)G180 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1px5A 172 :LIKECKSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=35726 # 2b0lA.214.62 read from T0547.t2k.many.frag # found chain 2b0lA in template set Warning: unaligning (T0547)A214 because of BadResidue code BAD_PEPTIDE at template residue (2b0lA)A220 T0547 215 :VNLLKENK 2b0lA 221 :LRKLESAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=35727 # 1p1mA.214.185 read from T0547.t2k.many.frag # found chain 1p1mA in training set T0547 214 :AVNLLKENK 1p1mA 186 :VFDTAKSLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35728 # 1qwgA.214.118 read from T0547.t2k.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)N221 (1qwgA)N126 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1qwgA)G127 because T (delta_L) conformation "forbidden" or filtered. T0547 214 :AVNLLKE 1qwgA 119 :AIKRAKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=35729 # 1sfxA.214.24 read from T0547.t2k.many.frag # found chain 1sfxA in training set Warning: unaligning (T0547)K222 (1sfxA)G32 because S (epsilon) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1sfxA 24 :IYSLLLER Number of specific fragments extracted= 1 number of extra gaps= 1 total=35730 # 1go3F.214.54 read from T0547.t2k.many.frag # found chain 1go3F in training set Warning: unaligning (T0547)K222 (1go3F)G63 because T (delta_L) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1go3F 55 :LVEELISL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35731 # 2aeuA.214.163 read from T0547.t2k.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)K222 (2aeuA)E172 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 2aeuA 164 :VINTAKNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=35732 # 1h8eA.214.215 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K222 (1h8eA)D224 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1h8eA 216 :LVKRLTDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35733 # 1xg4A.214.138 read from T0547.t2k.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)N221 (1xg4A)A147 because G (3-10) conformation "forbidden" or filtered. T0547 214 :AVNLLKE 1xg4A 140 :RIRAAVD T0547 222 :K 1xg4A 148 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=35735 # 1oltA.214.193 read from T0547.t2k.many.frag # found chain 1oltA in template set T0547 214 :AVNLLKENK 1oltA 194 :LLNHAREIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35736 # 1nkiA.214.76 read from T0547.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)K222 (1nkiA)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1nkiA 77 :FAAQLRAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=35737 # 1vkmA.214.209 read from T0547.t2k.many.frag # found chain 1vkmA in template set Warning: unaligning (T0547)K222 (1vkmA)E206 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1vkmA 198 :IYESMKEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=35738 1ed1A expands to /projects/compbio/data/pdb/1ed1.pdb.gz 1ed1A:# 1ed1A.214.36 read from T0547.t2k.many.frag # adding 1ed1A to template set # found chain 1ed1A in template set Warning: unaligning (T0547)K222 (1ed1A)G45 because T (delta_L) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1ed1A 37 :AANELDRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=35739 # 1vyrA.214.255 read from T0547.t2k.many.frag # found chain 1vyrA in training set T0547 214 :AVNLLKENK 1vyrA 256 :LIEELAKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35740 # 1onrA.214.207 read from T0547.t2k.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)K222 (1onrA)G217 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1onrA 209 :IYQYYKEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=35741 1yhtA expands to /projects/compbio/data/pdb/1yht.pdb.gz 1yhtA:# 1yhtA.214.99 read from T0547.t2k.many.frag # adding 1yhtA to template set # found chain 1yhtA in template set T0547 214 :AVNLLKENK 1yhtA 100 :IKAYAKAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35742 # 1oi7A.214.106 read from T0547.t2k.many.frag # found chain 1oi7A in training set Warning: unaligning (T0547)K222 (1oi7A)G115 because T (delta_L) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1oi7A 107 :AVEEIKAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35743 # 1y7tA.214.52 read from T0547.t2k.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)K222 (1y7tA)A60 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1y7tA 52 :VVMELEDC Number of specific fragments extracted= 1 number of extra gaps= 1 total=35744 1e6iA expands to /projects/compbio/data/pdb/1e6i.pdb.gz 1e6iA:# 1e6iA.214.20 read from T0547.t2k.many.frag # adding 1e6iA to template set # found chain 1e6iA in template set T0547 214 :AVNLLKENK 1e6iA 339 :ILTELQNHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35745 # 1yx1A.214.146 read from T0547.t2k.many.frag # found chain 1yx1A in training set Warning: unaligning (T0547)N221 (1yx1A)Q152 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1yx1A)Q153 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKE 1yx1A 145 :FFRLAER Number of specific fragments extracted= 1 number of extra gaps= 1 total=35746 # 1drw.214.87 read from T0547.t2k.many.frag # found chain 1drw in template set Warning: unaligning (T0547)K222 (1drw)G96 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1drw 88 :HLAFCRQH Number of specific fragments extracted= 1 number of extra gaps= 1 total=35747 # 2a3nA.214.120 read from T0547.t2k.many.frag # found chain 2a3nA in training set T0547 214 :AVNLLKENK 2a3nA 109 :IAEWCKAQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35748 # 1rcqA.215.140 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 215 :VNLLKE 1rcqA 141 :HERLRA T0547 223 :L 1rcqA 149 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=35750 # 1vp4A.215.175 read from T0547.t2k.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)K222 (1vp4A)G171 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1vp4A 164 :LSEFDKN T0547 223 :L 1vp4A 172 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=35752 # 1e6iA.215.21 read from T0547.t2k.many.frag # found chain 1e6iA in template set T0547 215 :VNLLKENKL 1e6iA 340 :LTELQNHAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35753 # 1nkiA.215.77 read from T0547.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)K222 (1nkiA)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1nkiA 78 :AAQLRAH T0547 223 :L 1nkiA 86 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=35755 # 1m5wA.215.119 read from T0547.t2k.many.frag # found chain 1m5wA in template set T0547 215 :VNLLKENKL 1m5wA 120 :CKRLADAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35756 # 1px5A.215.172 read from T0547.t2k.many.frag # found chain 1px5A in training set Warning: unaligning (T0547)K222 (1px5A)G180 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1px5A 173 :IKECKSR T0547 223 :L 1px5A 181 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=35758 # 1zp4A.215.194 read from T0547.t2k.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)K222 (1zp4A)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1zp4A 195 :RDRCVSA T0547 223 :L 1zp4A 203 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=35760 # 2b0lA.215.63 read from T0547.t2k.many.frag # found chain 2b0lA in template set T0547 215 :VNLLKENKL 2b0lA 221 :LRKLESAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35761 # 1fobA.215.65 read from T0547.t2k.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)K222 (1fobA)G73 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1fobA 66 :AKRVKAA T0547 223 :L 1fobA 74 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=35763 # 1go3F.215.55 read from T0547.t2k.many.frag # found chain 1go3F in training set Warning: unaligning (T0547)K222 (1go3F)G63 because T (delta_L) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1go3F 56 :VEELISL T0547 223 :L 1go3F 64 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=35765 # 1wdaA.215.507 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K222 (1wdaA)G508 because T (delta_L) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1wdaA 501 :FQEQQNE T0547 223 :L 1wdaA 509 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=35767 # 1xg4A.215.139 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 215 :VNLLKENKL 1xg4A 141 :IRAAVDAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35768 # 1ed1A.215.37 read from T0547.t2k.many.frag # found chain 1ed1A in template set T0547 215 :VNLLKENKL 1ed1A 38 :ANELDRFGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35769 # 2b8nA.215.156 read from T0547.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K222 (2b8nA)G152 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 2b8nA 145 :TSALLKS T0547 223 :L 2b8nA 153 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=35771 # 1oi7A.215.107 read from T0547.t2k.many.frag # found chain 1oi7A in training set T0547 215 :VNLLKENKL 1oi7A 108 :VEEIKALGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35772 # 1h8eA.215.216 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K222 (1h8eA)D224 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1h8eA 217 :VKRLTDA T0547 223 :L 1h8eA 225 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=35774 # 1hdhA.215.297 read from T0547.t2k.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)K222 (1hdhA)G305 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1hdhA 298 :VDYLRRQ T0547 223 :L 1hdhA 306 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=35776 # 3lzt.215.94 read from T0547.t2k.many.frag # found chain 3lzt in training set Warning: unaligning (T0547)N221 (3lzt)D101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (3lzt)G102 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE in next template residue (3lzt)G104 T0547 215 :VNLLKE 3lzt 95 :AKKIVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=35777 # 1d8wA.215.125 read from T0547.t2k.many.frag # found chain 1d8wA in training set Warning: unaligning (T0547)N221 (1d8wA)N133 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1d8wA)Q134 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKE 1d8wA 127 :VEWAKA T0547 223 :L 1d8wA 135 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=35779 # 1vkmA.215.210 read from T0547.t2k.many.frag # found chain 1vkmA in template set Warning: unaligning (T0547)K222 (1vkmA)E206 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1vkmA 199 :YESMKEM T0547 223 :L 1vkmA 207 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=35781 # 1oltA.215.194 read from T0547.t2k.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)K222 (1oltA)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1oltA 195 :LNHAREI T0547 223 :L 1oltA 203 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=35783 # 1wzdA.215.59 read from T0547.t2k.many.frag # found chain 1wzdA in training set T0547 215 :VNLLKENKL 1wzdA 60 :VDAVRASGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35784 # 1r12A.215.214 read from T0547.t2k.many.frag # found chain 1r12A in training set Warning: unaligning (T0547)K222 (1r12A)H222 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1r12A 215 :EKLVKAK T0547 223 :L 1r12A 223 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=35786 # 1byi.215.158 read from T0547.t2k.many.frag # found chain 1byi in training set T0547 215 :VNLLKENKL 1byi 159 :AQVIQHAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35787 # 1y7tA.215.53 read from T0547.t2k.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)K222 (1y7tA)A60 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1y7tA 53 :VMELEDC T0547 223 :L 1y7tA 61 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=35789 # 1kptA.215.69 read from T0547.t2k.many.frag # found chain 1kptA in training set T0547 215 :VNLLKENKL 1kptA 70 :LTNLVNHGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=35790 # 1i1wA.215.69 read from T0547.t2k.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)K222 (1i1wA)G77 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1i1wA 70 :VNWAQQN T0547 223 :L 1i1wA 78 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=35792 1zxxA expands to /projects/compbio/data/pdb/1zxx.pdb.gz 1zxxA:# 1zxxA.215.204 read from T0547.t2k.many.frag # adding 1zxxA to template set # found chain 1zxxA in template set Warning: unaligning (T0547)K222 (1zxxA)G212 because T (delta_L) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1zxxA 205 :LKQAQES T0547 223 :L 1zxxA 213 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=35794 # 1wb4A.215.239 read from T0547.t2k.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)N221 (1wb4A)L1034 because P (beta_P) conformation "forbidden" or filtered. T0547 215 :VNLLKE 1wb4A 1028 :IEAMKA T0547 222 :KL 1wb4A 1035 :PH Number of specific fragments extracted= 2 number of extra gaps= 1 total=35796 # 1xw8A.215.43 read from T0547.t2k.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)K222 (1xw8A)G51 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1xw8A 44 :VREAIKN T0547 223 :L 1xw8A 52 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=35798 # 1rcqA.216.141 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 216 :NLLKE 1rcqA 142 :ERLRA T0547 223 :LL 1rcqA 149 :KV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35800 # 1vp4A.216.176 read from T0547.t2k.many.frag # found chain 1vp4A in template set T0547 216 :NLLKENKLL 1vp4A 165 :SEFDKNGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35801 # 1hdhA.216.298 read from T0547.t2k.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)K222 (1hdhA)G305 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1hdhA 299 :DYLRRQ T0547 223 :LL 1hdhA 306 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35803 # 1ysjA.216.163 read from T0547.t2k.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)K222 (1ysjA)G146 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1ysjA 140 :RKVLEA T0547 223 :LL 1ysjA 147 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35805 # 1e6iA.216.22 read from T0547.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0547)N221 (1e6iA)H346 because P (beta_P) conformation "forbidden" or filtered. T0547 216 :NLLKE 1e6iA 341 :TELQN T0547 222 :KLL 1e6iA 347 :AAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35807 # 1c96A.216.337 read from T0547.t2k.many.frag # found chain 1c96A in template set Warning: unaligning (T0547)K222 (1c96A)G345 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1c96A 339 :SVAEKE T0547 223 :LL 1c96A 346 :WP Number of specific fragments extracted= 2 number of extra gaps= 1 total=35809 # 1wdaA.216.508 read from T0547.t2k.many.frag # found chain 1wdaA in template set T0547 216 :NLLKENKLL 1wdaA 502 :QEQQNEGHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35810 # 1ra0A.216.234 read from T0547.t2k.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)K222 (1ra0A)G237 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1ra0A 231 :ALAHHE T0547 223 :LL 1ra0A 238 :MG Number of specific fragments extracted= 2 number of extra gaps= 1 total=35812 # 1h8eA.216.217 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)N221 (1h8eA)A223 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1h8eA)D224 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKE 1h8eA 218 :KRLTD T0547 223 :LL 1h8eA 225 :AM Number of specific fragments extracted= 2 number of extra gaps= 1 total=35814 # 1wzdA.216.60 read from T0547.t2k.many.frag # found chain 1wzdA in training set Warning: unaligning (T0547)L224 (1wzdA)A69 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKENKL 1wzdA 61 :DAVRASGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=35815 # 1nkiA.216.78 read from T0547.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)K222 (1nkiA)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1nkiA 79 :AQLRAH T0547 223 :LL 1nkiA 86 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35817 # 1zp4A.216.195 read from T0547.t2k.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)K222 (1zp4A)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1zp4A 196 :DRCVSA T0547 223 :LL 1zp4A 203 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=35819 # 1wb4A.216.240 read from T0547.t2k.many.frag # found chain 1wb4A in training set T0547 216 :NLLKENKLL 1wb4A 1029 :EAMKALPHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35820 # 1r12A.216.215 read from T0547.t2k.many.frag # found chain 1r12A in training set Warning: unaligning (T0547)K222 (1r12A)H222 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1r12A 216 :KLVKAK T0547 223 :LL 1r12A 223 :FA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35822 # 1zxxA.216.205 read from T0547.t2k.many.frag # found chain 1zxxA in template set Warning: unaligning (T0547)K222 (1zxxA)G212 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1zxxA 206 :KQAQES T0547 223 :LL 1zxxA 213 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35824 # 1xg4A.216.140 read from T0547.t2k.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)N221 (1xg4A)A147 because G (3-10) conformation "forbidden" or filtered. T0547 216 :NLLKE 1xg4A 142 :RAAVD T0547 222 :KLL 1xg4A 148 :KTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35826 # 2b8nA.216.157 read from T0547.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K222 (2b8nA)G152 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 2b8nA 146 :SALLKS T0547 223 :LL 2b8nA 153 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=35828 # 1px5A.216.173 read from T0547.t2k.many.frag # found chain 1px5A in training set Warning: unaligning (T0547)K222 (1px5A)G180 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1px5A 174 :KECKSR T0547 223 :LL 1px5A 181 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35830 # 1fobA.216.66 read from T0547.t2k.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)K222 (1fobA)G73 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1fobA 67 :KRVKAA T0547 223 :LL 1fobA 74 :MS Number of specific fragments extracted= 2 number of extra gaps= 1 total=35832 # 1m5wA.216.120 read from T0547.t2k.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)K222 (1m5wA)G127 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1m5wA 121 :KRLADA T0547 223 :LL 1m5wA 128 :IQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=35834 # 1v4aA.216.353 read from T0547.t2k.many.frag # found chain 1v4aA in template set Warning: unaligning (T0547)K222 (1v4aA)H360 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1v4aA 354 :SAIAEL T0547 223 :LL 1v4aA 361 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35836 # 1go3F.216.56 read from T0547.t2k.many.frag # found chain 1go3F in training set T0547 216 :NLLKENKLL 1go3F 57 :EELISLGID Number of specific fragments extracted= 1 number of extra gaps= 0 total=35837 # 1oltA.216.195 read from T0547.t2k.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)K222 (1oltA)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1oltA 196 :NHAREI T0547 223 :LL 1oltA 203 :FT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35839 # 1dp4A.216.223 read from T0547.t2k.many.frag # found chain 1dp4A in template set Warning: unaligning (T0547)K222 (1dp4A)G230 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1dp4A 224 :LLALNA T0547 223 :LL 1dp4A 231 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35841 # 1kptA.216.70 read from T0547.t2k.many.frag # found chain 1kptA in training set Warning: unaligning (T0547)K222 (1kptA)G77 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1kptA 71 :TNLVNH T0547 223 :LL 1kptA 78 :CR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35843 # 1tf5A.216.558 read from T0547.t2k.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)K222 (1tf5A)G562 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1tf5A 556 :AMLDRF T0547 223 :LL 1tf5A 563 :MD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35845 # 1oi7A.216.108 read from T0547.t2k.many.frag # found chain 1oi7A in training set Warning: unaligning (T0547)K222 (1oi7A)G115 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1oi7A 109 :EEIKAL T0547 223 :LL 1oi7A 116 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35847 1sra expands to /projects/compbio/data/pdb/1sra.pdb.gz 1sra:Warning: there is no chain 1sra will retry with 1sraA # 1sra.216.44 read from T0547.t2k.many.frag # adding 1sra to template set # found chain 1sra in template set T0547 216 :NLLKENKLL 1sra 180 :KKIHENEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35848 1rlr expands to /projects/compbio/data/pdb/1rlr.pdb.gz 1rlr:Warning: there is no chain 1rlr will retry with 1rlrA # 1rlr.216.106 read from T0547.t2k.many.frag # adding 1rlr to template set # found chain 1rlr in template set Warning: unaligning (T0547)K222 (1rlr)G113 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1rlr 107 :VKMVEM T0547 223 :LL 1rlr 114 :KY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35850 # 3lzt.216.95 read from T0547.t2k.many.frag # found chain 3lzt in training set Warning: unaligning (T0547)K222 (3lzt)G102 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L223 because of BadResidue code BAD_PEPTIDE in next template residue (3lzt)G104 Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE at template residue (3lzt)G104 T0547 216 :NLLKEN 3lzt 96 :KKIVSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=35851 # 1hdhA.217.299 read from T0547.t2k.many.frag # found chain 1hdhA in training set T0547 217 :LLKENKLLE 1hdhA 300 :YLRRQGELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35852 # 1vp4A.217.177 read from T0547.t2k.many.frag # found chain 1vp4A in template set T0547 217 :LLKENKLLE 1vp4A 166 :EFDKNGKIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35853 # 1rcqA.217.142 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 217 :LLKE 1rcqA 143 :RLRA T0547 223 :LLE 1rcqA 149 :KVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35855 # 1c96A.217.338 read from T0547.t2k.many.frag # found chain 1c96A in template set Warning: unaligning (T0547)K222 (1c96A)G345 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKEN 1c96A 340 :VAEKE T0547 223 :LLE 1c96A 346 :WPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35857 # 1ysjA.217.164 read from T0547.t2k.many.frag # found chain 1ysjA in template set T0547 217 :LLKENKLLE 1ysjA 141 :KVLEAGVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35858 # 1ra0A.217.235 read from T0547.t2k.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)K222 (1ra0A)G237 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKEN 1ra0A 232 :LAHHE T0547 223 :LLE 1ra0A 238 :MGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35860 # 1h8eA.217.218 read from T0547.t2k.many.frag # found chain 1h8eA in template set T0547 217 :LLKENKLLE 1h8eA 219 :RLTDADAMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35861 # 1e6iA.217.23 read from T0547.t2k.many.frag # found chain 1e6iA in template set T0547 217 :LLKENKLLE 1e6iA 342 :ELQNHAAAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=35862 # 1wzdA.217.61 read from T0547.t2k.many.frag # found chain 1wzdA in training set Warning: unaligning (T0547)K222 (1wzdA)G67 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1wzdA)A69 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKEN 1wzdA 62 :AVRAS T0547 223 :L 1wzdA 68 :F T0547 225 :E 1wzdA 70 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=35865 # 1wdaA.217.509 read from T0547.t2k.many.frag # found chain 1wdaA in template set T0547 217 :LLKENKLLE 1wdaA 503 :EQQNEGHGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35866 # 1r12A.217.216 read from T0547.t2k.many.frag # found chain 1r12A in training set Warning: unaligning (T0547)K222 (1r12A)H222 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKEN 1r12A 217 :LVKAK T0547 223 :LLE 1r12A 223 :FAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=35868 # 1zp4A.217.196 read from T0547.t2k.many.frag # found chain 1zp4A in template set T0547 217 :LLKENKLLE 1zp4A 197 :RCVSAGIDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35869 # 1xg4A.217.141 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 217 :LLKENKLLE 1xg4A 143 :AAVDAKTDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=35870 # 1nkiA.217.79 read from T0547.t2k.many.frag # found chain 1nkiA in training set T0547 217 :LLKENKLLE 1nkiA 80 :QLRAHGVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35871 # 1t7lA.217.294 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 217 :LLKENKLLE 1t7lA 263 :NLEKHGFPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35872 # 1eyeA.217.162 read from T0547.t2k.many.frag # found chain 1eyeA in template set T0547 217 :LLKENKLLE 1eyeA 163 :DAVAAGVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=35873 # 1e58A.217.42 read from T0547.t2k.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)L224 (1e58A)S50 because Y (epsilon') conformation "forbidden" or filtered. T0547 217 :LLKENKL 1e58A 43 :LLKEEGY T0547 225 :E 1e58A 51 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=35875 # 2b8nA.217.158 read from T0547.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K222 (2b8nA)G152 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKEN 2b8nA 147 :ALLKS T0547 223 :LLE 2b8nA 153 :ASI Number of specific fragments extracted= 2 number of extra gaps= 1 total=35877 # 1i0dA.217.181 read from T0547.t2k.many.frag # found chain 1i0dA in template set Warning: unaligning (T0547)N221 (1i0dA)E219 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1i0dA)G220 because T (delta_L) conformation "forbidden" or filtered. T0547 217 :LLKE 1i0dA 215 :IFES T0547 223 :LLE 1i0dA 221 :LSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=35879 # 1m5wA.217.121 read from T0547.t2k.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)K222 (1m5wA)G127 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKEN 1m5wA 122 :RLADA T0547 223 :LLE 1m5wA 128 :IQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35881 # 1zxxA.217.206 read from T0547.t2k.many.frag # found chain 1zxxA in template set Warning: unaligning (T0547)E225 (1zxxA)H215 because Y (epsilon') conformation "forbidden" or filtered. T0547 217 :LLKENKLL 1zxxA 207 :QAQESGKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=35882 # 1u60A.217.173 read from T0547.t2k.many.frag # found chain 1u60A in training set Warning: unaligning (T0547)K222 (1u60A)G179 because T (delta_L) conformation "forbidden" or filtered. T0547 217 :LLKEN 1u60A 174 :LLYSA T0547 223 :LLE 1u60A 180 :YLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35884 # 1kptA.217.71 read from T0547.t2k.many.frag # found chain 1kptA in training set T0547 217 :LLKENKLLE 1kptA 72 :NLVNHGCRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35885 # 1v4aA.217.354 read from T0547.t2k.many.frag # found chain 1v4aA in template set Warning: unaligning (T0547)K222 (1v4aA)H360 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKEN 1v4aA 355 :AIAEL T0547 223 :LLE 1v4aA 361 :LLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=35887 # 1p4xA.217.196 read from T0547.t2k.many.frag # found chain 1p4xA in template set Warning: unaligning (T0547)K222 (1p4xA)G202 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1p4xA)L204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1p4xA)I205 because P (beta_P) conformation "forbidden" or filtered. T0547 217 :LLKEN 1p4xA 197 :NLKKQ T0547 223 :L 1p4xA 203 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=35889 # 1in0A.217.112 read from T0547.t2k.many.frag # found chain 1in0A in template set Warning: unaligning (T0547)K222 (1in0A)K118 because T (delta_L) conformation "forbidden" or filtered. T0547 217 :LLKEN 1in0A 113 :LVKDS T0547 223 :LLE 1in0A 119 :IKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35891 # 1px5A.217.174 read from T0547.t2k.many.frag # found chain 1px5A in training set T0547 217 :LLKENKLLE 1px5A 175 :ECKSRGKEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35892 2audA expands to /projects/compbio/data/pdb/2aud.pdb.gz 2audA:# 2audA.217.152 read from T0547.t2k.many.frag # adding 2audA to template set # found chain 2audA in template set T0547 217 :LLKENKLLE 2audA 154 :KMIDNKEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35893 # 1i1wA.217.71 read from T0547.t2k.many.frag # found chain 1i1wA in training set T0547 217 :LLKENKLLE 1i1wA 72 :WAQQNGKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35894 # 1oltA.217.196 read from T0547.t2k.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)E225 (1oltA)S205 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKENKLL 1oltA 197 :HAREIGFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=35895 # 1vp4A.218.178 read from T0547.t2k.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)K222 (1vp4A)G171 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1vp4A 167 :FDKN T0547 223 :LLEQ 1vp4A 172 :KIKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=35897 # 1hdhA.218.300 read from T0547.t2k.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)K222 (1hdhA)G305 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1hdhA 301 :LRRQ T0547 223 :LLEQ 1hdhA 306 :ELDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=35899 # 1ysjA.218.165 read from T0547.t2k.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)Q226 (1ysjA)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKENKLLE 1ysjA 142 :VLEAGVLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=35900 # 1rcqA.218.143 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 218 :LKE 1rcqA 144 :LRA T0547 223 :LLEQ 1rcqA 149 :KVAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=35902 # 1c96A.218.339 read from T0547.t2k.many.frag # found chain 1c96A in template set Warning: unaligning (T0547)K222 (1c96A)G345 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1c96A 341 :AEKE T0547 223 :LLEQ 1c96A 346 :WPLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35904 # 1ra0A.218.236 read from T0547.t2k.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)K222 (1ra0A)G237 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1ra0A 233 :AHHE T0547 223 :LLEQ 1ra0A 238 :MGAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35906 # 1h8eA.218.219 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K222 (1h8eA)D224 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1h8eA 220 :LTDA T0547 223 :LLEQ 1h8eA 225 :AMKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35908 # 1e6iA.218.24 read from T0547.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0547)N221 (1e6iA)H346 because P (beta_P) conformation "forbidden" or filtered. T0547 218 :LKE 1e6iA 343 :LQN T0547 222 :KLLEQ 1e6iA 347 :AAAWP Number of specific fragments extracted= 2 number of extra gaps= 1 total=35910 # 1nvmB.218.62 read from T0547.t2k.many.frag # found chain 1nvmB in training set T0547 218 :LKENKLLEQ 1nvmB 63 :LIKLPEFAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35911 # 1wzdA.218.62 read from T0547.t2k.many.frag # found chain 1wzdA in training set Warning: unaligning (T0547)K222 (1wzdA)G67 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKEN 1wzdA 63 :VRAS T0547 223 :LLEQ 1wzdA 68 :FAES Number of specific fragments extracted= 2 number of extra gaps= 1 total=35913 # 1eyeA.218.163 read from T0547.t2k.many.frag # found chain 1eyeA in template set Warning: unaligning (T0547)K222 (1eyeA)G168 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKEN 1eyeA 164 :AVAA T0547 223 :LLEQ 1eyeA 169 :VDPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35915 # 1t7lA.218.295 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 218 :LKENKLLEQ 1t7lA 264 :LEKHGFPED Number of specific fragments extracted= 1 number of extra gaps= 0 total=35916 # 2audA.218.153 read from T0547.t2k.many.frag # found chain 2audA in template set Warning: unaligning (T0547)L223 (2audA)E160 because D (zeta) conformation "forbidden" or filtered. T0547 218 :LKENK 2audA 155 :MIDNK T0547 224 :LEQ 2audA 161 :FDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35918 # 1u60A.218.174 read from T0547.t2k.many.frag # found chain 1u60A in training set Warning: unaligning (T0547)Q226 (1u60A)C183 because Y (epsilon') conformation "forbidden" or filtered. T0547 218 :LKENKLLE 1u60A 175 :LYSAGYLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=35919 # 2bfwA.218.61 read from T0547.t2k.many.frag # found chain 2bfwA in training set T0547 218 :LKENKLLEQ 2bfwA 275 :LSSKKEFQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35920 # 1wdaA.218.510 read from T0547.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K222 (1wdaA)G508 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKEN 1wdaA 504 :QQNE T0547 223 :LLEQ 1wdaA 509 :HGEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35922 # 1t4bA.218.20 read from T0547.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)K222 (1t4bA)R25 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1t4bA 21 :MVEE T0547 223 :LLEQ 1t4bA 26 :DFDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35924 2bw3A expands to /projects/compbio/data/pdb/2bw3.pdb.gz 2bw3A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2bw3A.218.222 read from T0547.t2k.many.frag # adding 2bw3A to template set # found chain 2bw3A in template set Warning: unaligning (T0547)K222 (2bw3A)N302 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 2bw3A 298 :FKKA T0547 223 :LLEQ 2bw3A 303 :LQHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35926 1ujcA expands to /projects/compbio/data/pdb/1ujc.pdb.gz 1ujcA:# 1ujcA.218.37 read from T0547.t2k.many.frag # adding 1ujcA to template set # found chain 1ujcA in template set T0547 218 :LKENKLLEQ 1ujcA 38 :LKGQKVEIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35927 # 1x3mA.218.83 read from T0547.t2k.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)K222 (1x3mA)D75 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1x3mA 71 :LEKR T0547 223 :LLEQ 1x3mA 76 :LTDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=35929 # 1r12A.218.217 read from T0547.t2k.many.frag # found chain 1r12A in training set Warning: unaligning (T0547)K222 (1r12A)H222 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1r12A 218 :VKAK T0547 223 :LLEQ 1r12A 223 :FAFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35931 # 1t0tV.218.88 read from T0547.t2k.many.frag # found chain 1t0tV in training set T0547 218 :LKENKLLEQ 1t0tV 89 :LNKTKLADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35932 # 1rlr.218.108 read from T0547.t2k.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)K222 (1rlr)G113 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKEN 1rlr 109 :MVEM T0547 223 :LLEQ 1rlr 114 :KYDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=35934 # 1p4xA.218.197 read from T0547.t2k.many.frag # found chain 1p4xA in template set Warning: unaligning (T0547)E225 (1p4xA)I205 because P (beta_P) conformation "forbidden" or filtered. T0547 218 :LKENKLL 1p4xA 198 :LKKQGYL T0547 226 :Q 1p4xA 206 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=35936 # 1zp4A.218.197 read from T0547.t2k.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)K222 (1zp4A)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKEN 1zp4A 198 :CVSA T0547 223 :LLEQ 1zp4A 203 :IDVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35938 1vfgA expands to /projects/compbio/data/pdb/1vfg.pdb.gz 1vfgA:# 1vfgA.218.177 read from T0547.t2k.many.frag # adding 1vfgA to template set # found chain 1vfgA in template set T0547 218 :LKENKLLEQ 1vfgA 178 :AVNLGLLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35939 # 1e58A.218.43 read from T0547.t2k.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)L224 (1e58A)S50 because Y (epsilon') conformation "forbidden" or filtered. T0547 218 :LKENKL 1e58A 44 :LKEEGY T0547 225 :EQ 1e58A 51 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35941 # 1xg4A.218.142 read from T0547.t2k.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)K222 (1xg4A)K148 because P (beta_P) conformation "forbidden" or filtered. T0547 218 :LKEN 1xg4A 144 :AVDA T0547 223 :LLEQ 1xg4A 149 :TDPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35943 # 1mj5A.218.91 read from T0547.t2k.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)E225 (1mj5A)G99 because S (epsilon) conformation "forbidden" or filtered. T0547 218 :LKENKLL 1mj5A 92 :LWEALDL T0547 226 :Q 1mj5A 100 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=35945 # 1zdyA.218.77 read from T0547.t2k.many.frag # found chain 1zdyA in training set T0547 218 :LKENKLLEQ 1zdyA 78 :VVEKGLFPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35946 # 1hdhA.219.301 read from T0547.t2k.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)K222 (1hdhA)G305 because L (left) conformation "forbidden" or filtered. T0547 219 :KEN 1hdhA 302 :RRQ T0547 223 :LLEQF 1hdhA 306 :ELDNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35948 # 1vp4A.219.179 read from T0547.t2k.many.frag # found chain 1vp4A in template set T0547 219 :KENKLLEQF 1vp4A 168 :DKNGKIKQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35949 # 1rcqA.219.144 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)Q226 (1rcqA)K152 because P (beta_P) conformation "forbidden" or filtered. T0547 219 :KE 1rcqA 145 :RA T0547 223 :LLE 1rcqA 149 :KVA T0547 227 :F 1rcqA 153 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=35952 # 1h8eA.219.220 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K222 (1h8eA)D224 because L (left) conformation "forbidden" or filtered. T0547 219 :KEN 1h8eA 221 :TDA T0547 223 :LLEQF 1h8eA 225 :AMKYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35954 # 1ra0A.219.237 read from T0547.t2k.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)K222 (1ra0A)G237 because L (left) conformation "forbidden" or filtered. T0547 219 :KEN 1ra0A 234 :HHE T0547 223 :LLEQF 1ra0A 238 :MGARV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35956 # 1c96A.219.340 read from T0547.t2k.many.frag # found chain 1c96A in template set T0547 219 :KENKLLEQF 1c96A 342 :EKEGWPLDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35957 # 1ysjA.219.166 read from T0547.t2k.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)Q226 (1ysjA)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 219 :KENKLLE 1ysjA 143 :LEAGVLN T0547 227 :F 1ysjA 151 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=35959 # 1nvmB.219.63 read from T0547.t2k.many.frag # found chain 1nvmB in training set T0547 219 :KENKLLEQF 1nvmB 64 :IKLPEFADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35960 # 1x3mA.219.84 read from T0547.t2k.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)K222 (1x3mA)D75 because L (left) conformation "forbidden" or filtered. T0547 219 :KEN 1x3mA 72 :EKR T0547 223 :LLEQF 1x3mA 76 :LTDSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35962 # 2bfwA.219.62 read from T0547.t2k.many.frag # found chain 2bfwA in training set T0547 219 :KENKLLEQF 2bfwA 276 :SSKKEFQEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=35963 # 1e6iA.219.25 read from T0547.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0547)N221 (1e6iA)H346 because P (beta_P) conformation "forbidden" or filtered. T0547 219 :KE 1e6iA 344 :QN T0547 222 :KLLEQF 1e6iA 347 :AAAWPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=35965 # 1t4bA.219.21 read from T0547.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)N221 (1t4bA)E24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1t4bA)R25 because L (left) conformation "forbidden" or filtered. T0547 219 :KE 1t4bA 22 :VE T0547 223 :LLEQF 1t4bA 26 :DFDAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=35967 # 1h4xA.219.90 read from T0547.t2k.many.frag # found chain 1h4xA in training set Warning: unaligning (T0547)K222 (1h4xA)G94 because L (left) conformation "forbidden" or filtered. T0547 219 :KEN 1h4xA 91 :QFS T0547 223 :LLEQF 1h4xA 95 :LGPWM Number of specific fragments extracted= 2 number of extra gaps= 1 total=35969 # 1eyeA.219.164 read from T0547.t2k.many.frag # found chain 1eyeA in template set T0547 219 :KENKLLEQF 1eyeA 165 :VAAGVDPAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35970 # 2bw3A.219.223 read from T0547.t2k.many.frag # found chain 2bw3A in template set T0547 219 :KENKLLEQF 2bw3A 299 :KKANLQHRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35971 # 2audA.219.154 read from T0547.t2k.many.frag # found chain 2audA in template set T0547 219 :KENKLLEQF 2audA 156 :IDNKEFDLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35972 # 1t0tV.219.89 read from T0547.t2k.many.frag # found chain 1t0tV in training set T0547 219 :KENKLLEQF 1t0tV 90 :NKTKLADYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35973 # 1oxwA.219.294 read from T0547.t2k.many.frag # found chain 1oxwA in template set Warning: unaligning (T0547)K222 (1oxwA)D311 because L (left) conformation "forbidden" or filtered. T0547 219 :KEN 1oxwA 308 :QAL T0547 223 :LLEQF 1oxwA 312 :SKNNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35975 # 1t7lA.219.296 read from T0547.t2k.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)N221 (1t7lA)H267 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1t7lA)G268 because S (epsilon) conformation "forbidden" or filtered. T0547 219 :KE 1t7lA 265 :EK T0547 223 :LLEQF 1t7lA 269 :FPEDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=35977 # 1wdaA.219.511 read from T0547.t2k.many.frag # found chain 1wdaA in template set T0547 219 :KENKLLEQF 1wdaA 505 :QNEGHGEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35978 # 1t3tA.219.951 read from T0547.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)N221 (1t3tA)Y946 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1t3tA)G947 because T (delta_L) conformation "forbidden" or filtered. T0547 219 :KE 1t3tA 944 :AQ T0547 223 :LLEQF 1t3tA 948 :LADCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35980 # 1wzdA.219.63 read from T0547.t2k.many.frag # found chain 1wzdA in training set Warning: unaligning (T0547)L224 (1wzdA)A69 because L (left) conformation "forbidden" or filtered. T0547 219 :KENKL 1wzdA 64 :RASGF T0547 225 :EQF 1wzdA 70 :ESL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35982 1w2xA expands to /projects/compbio/data/pdb/1w2x.pdb.gz 1w2xA:# 1w2xA.219.191 read from T0547.t2k.many.frag # adding 1w2xA to template set # found chain 1w2xA in template set Warning: unaligning (T0547)K222 (1w2xA)D1670 because T (delta_L) conformation "forbidden" or filtered. T0547 219 :KEN 1w2xA 1667 :KKF T0547 223 :LLEQF 1w2xA 1671 :KENSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35984 # 1xg4A.219.143 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 219 :KENKLLEQF 1xg4A 145 :VDAKTDPDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35985 2bycA expands to /projects/compbio/data/pdb/2byc.pdb.gz 2bycA:Skipped atom 58, because occupancy 0.300 <= existing 0.700 in 2bycA Skipped atom 59, because occupancy 0.300 <= existing 0.700 in 2bycA # 2bycA.219.68 read from T0547.t2k.many.frag # adding 2bycA to template set # found chain 2bycA in template set Warning: unaligning (T0547)L224 (2bycA)H73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (2bycA)Q74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (2bycA)E75 because L (left) conformation "forbidden" or filtered. T0547 219 :KENKL 2bycA 68 :SADPR T0547 227 :F 2bycA 76 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=35987 # 1u60A.219.175 read from T0547.t2k.many.frag # found chain 1u60A in training set Warning: unaligning (T0547)Q226 (1u60A)C183 because Y (epsilon') conformation "forbidden" or filtered. T0547 219 :KENKLLE 1u60A 176 :YSAGYLY T0547 227 :F 1u60A 184 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=35989 # 1e58A.219.44 read from T0547.t2k.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)L224 (1e58A)S50 because Y (epsilon') conformation "forbidden" or filtered. T0547 219 :KENKL 1e58A 45 :KEEGY T0547 225 :EQF 1e58A 51 :FDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=35991 # 1pg4A.219.205 read from T0547.t2k.many.frag # found chain 1pg4A in training set T0547 219 :KENKLLEQF 1pg4A 206 :LKNPNVTSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35992 # 1xdnA.219.25 read from T0547.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)K222 (1xdnA)G76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1xdnA)Q80 because P (beta_P) conformation "forbidden" or filtered. T0547 219 :KEN 1xdnA 73 :HKS T0547 223 :LLE 1xdnA 77 :LAA T0547 227 :F 1xdnA 81 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=35995 # 1ujcA.219.38 read from T0547.t2k.many.frag # found chain 1ujcA in template set T0547 219 :KENKLLEQF 1ujcA 39 :KGQKVEIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=35996 # 1x3mA.220.85 read from T0547.t2k.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)K222 (1x3mA)D75 because L (left) conformation "forbidden" or filtered. T0547 220 :EN 1x3mA 73 :KR T0547 223 :LLEQFT 1x3mA 76 :LTDSVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35998 # 1hdhA.220.302 read from T0547.t2k.many.frag # found chain 1hdhA in training set T0547 220 :ENKLLEQFT 1hdhA 303 :RQGELDNTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35999 # 1vp4A.220.180 read from T0547.t2k.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)K222 (1vp4A)G171 because L (left) conformation "forbidden" or filtered. T0547 220 :EN 1vp4A 169 :KN T0547 223 :LLEQFT 1vp4A 172 :KIKQVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=36001 # 1nvmB.220.64 read from T0547.t2k.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)N221 (1nvmB)L66 because P (beta_P) conformation "forbidden" or filtered. T0547 220 :E 1nvmB 65 :K T0547 222 :KLLEQFT 1nvmB 67 :PEFADID Number of specific fragments extracted= 2 number of extra gaps= 1 total=36003 # 1h8eA.220.221 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K222 (1h8eA)D224 because L (left) conformation "forbidden" or filtered. T0547 220 :EN 1h8eA 222 :DA T0547 223 :LLEQFT 1h8eA 225 :AMKYTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36005 # 1c96A.220.341 read from T0547.t2k.many.frag # found chain 1c96A in template set T0547 220 :ENKLLEQFT 1c96A 343 :KEGWPLDIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36006 # 1rcqA.220.145 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 220 :E 1rcqA 146 :A T0547 223 :LLEQFT 1rcqA 149 :KVAKIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36008 # 1ysjA.220.167 read from T0547.t2k.many.frag # found chain 1ysjA in template set T0547 220 :ENKLLEQFT 1ysjA 144 :EAGVLNGVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36009 # 2bfwA.220.63 read from T0547.t2k.many.frag # found chain 2bfwA in training set T0547 220 :ENKLLEQFT 2bfwA 277 :SKKEFQEMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36010 # 1ra0A.220.238 read from T0547.t2k.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)K222 (1ra0A)G237 because L (left) conformation "forbidden" or filtered. T0547 220 :EN 1ra0A 235 :HE T0547 223 :LLEQFT 1ra0A 238 :MGARVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=36012 # 1r6wA.220.180 read from T0547.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)Q226 because of BadResidue code BAD_PEPTIDE in next template residue (1r6wA)I186 Warning: unaligning (T0547)F227 because of BadResidue code BAD_PEPTIDE at template residue (1r6wA)I186 T0547 220 :ENKLLE 1r6wA 179 :NPDYRD T0547 228 :T 1r6wA 187 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=36014 # 1t3tA.220.952 read from T0547.t2k.many.frag # found chain 1t3tA in template set T0547 220 :ENKLLEQFT 1t3tA 945 :QYGLADCVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36015 # 1t7lA.220.297 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 220 :ENKLLEQFT 1t7lA 266 :KHGFPEDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36016 # 1oxwA.220.295 read from T0547.t2k.many.frag # found chain 1oxwA in template set T0547 220 :ENKLLEQFT 1oxwA 309 :ALDSKNNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36017 # 1h4xA.220.91 read from T0547.t2k.many.frag # found chain 1h4xA in training set Warning: unaligning (T0547)K222 (1h4xA)G94 because L (left) conformation "forbidden" or filtered. T0547 220 :EN 1h4xA 92 :FS T0547 223 :LLEQFT 1h4xA 95 :LGPWMM Number of specific fragments extracted= 2 number of extra gaps= 1 total=36019 # 1eyeA.220.165 read from T0547.t2k.many.frag # found chain 1eyeA in template set T0547 220 :ENKLLEQFT 1eyeA 166 :AAGVDPARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36020 # 1xg4A.220.144 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 220 :ENKLLEQFT 1xg4A 146 :DAKTDPDFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36021 # 1t0tV.220.90 read from T0547.t2k.many.frag # found chain 1t0tV in training set T0547 220 :ENKLLEQFT 1t0tV 91 :KTKLADYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36022 # 1us0A.220.97 read from T0547.t2k.many.frag # found chain 1us0A in training set Warning: unaligning (T0547)L223 (1us0A)K100 because L (left) conformation "forbidden" or filtered. T0547 220 :ENK 1us0A 97 :SDL T0547 224 :LEQFT 1us0A 101 :LDYLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=36024 # 2apjA.220.185 read from T0547.t2k.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)L223 (2apjA)N189 because L (left) conformation "forbidden" or filtered. T0547 220 :ENK 2apjA 186 :HDL T0547 224 :LEQFT 2apjA 190 :LPSLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=36026 # 1t4bA.220.22 read from T0547.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)K222 (1t4bA)R25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T228 (1t4bA)R31 because D (zeta) conformation "forbidden" or filtered. T0547 220 :EN 1t4bA 23 :EE T0547 223 :LLEQF 1t4bA 26 :DFDAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=36028 # 1ufaA.220.129 read from T0547.t2k.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)E225 (1ufaA)G135 because T (delta_L) conformation "forbidden" or filtered. T0547 220 :ENKLL 1ufaA 130 :KAEEG T0547 226 :QFT 1ufaA 136 :QVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36030 # 1ynpA.220.125 read from T0547.t2k.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)L224 (1ynpA)T110 because Y (epsilon') conformation "forbidden" or filtered. T0547 220 :ENKL 1ynpA 106 :RRLQ T0547 225 :EQFT 1ynpA 111 :DYID Number of specific fragments extracted= 2 number of extra gaps= 1 total=36032 # 1t0hB.220.106 read from T0547.t2k.many.frag # found chain 1t0hB in template set Warning: unaligning (T0547)E225 (1t0hB)L313 because L (left) conformation "forbidden" or filtered. T0547 220 :ENKLL 1t0hB 308 :ELART T0547 226 :QFT 1t0hB 314 :QLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36034 # 2bw3A.220.224 read from T0547.t2k.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)K222 (2bw3A)N302 because L (left) conformation "forbidden" or filtered. T0547 220 :EN 2bw3A 300 :KA T0547 223 :LLEQFT 2bw3A 303 :LQHRLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=36036 # 1e6iA.220.26 read from T0547.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0547)F227 (1e6iA)F352 because G (3-10) conformation "forbidden" or filtered. T0547 220 :ENKLLEQ 1e6iA 345 :NHAAAWP T0547 228 :T 1e6iA 353 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=36038 # 1vkhA.220.108 read from T0547.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)Q226 (1vkhA)N103 because Y (epsilon') conformation "forbidden" or filtered. T0547 220 :ENKLLE 1vkhA 97 :KEKGLT T0547 227 :FT 1vkhA 104 :IN Number of specific fragments extracted= 2 number of extra gaps= 1 total=36040 1z5oA expands to /projects/compbio/data/pdb/1z5o.pdb.gz 1z5oA:# 1z5oA.220.143 read from T0547.t2k.many.frag # adding 1z5oA to template set # found chain 1z5oA in template set Warning: unaligning (T0547)L223 (1z5oA)N137 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1z5oA)A140 because Y (epsilon') conformation "forbidden" or filtered. T0547 220 :ENK 1z5oA 134 :AEL T0547 224 :LE 1z5oA 138 :LN T0547 227 :FT 1z5oA 141 :VR Number of specific fragments extracted= 3 number of extra gaps= 2 total=36043 1qyrA expands to /projects/compbio/data/pdb/1qyr.pdb.gz 1qyrA:# 1qyrA.220.109 read from T0547.t2k.many.frag # adding 1qyrA to template set # found chain 1qyrA in template set Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE in next template residue (1qyrA)D131 Warning: unaligning (T0547)E225 because of BadResidue code BAD_PEPTIDE at template residue (1qyrA)D131 T0547 220 :ENKL 1qyrA 126 :LFSY T0547 226 :QFT 1qyrA 132 :AIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=36045 # 1no5A.220.70 read from T0547.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0547)N221 (1no5A)S72 because P (beta_P) conformation "forbidden" or filtered. T0547 220 :E 1no5A 71 :E T0547 222 :KLLEQFT 1no5A 73 :DLPWRVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=36047 # 1nvmB.221.65 read from T0547.t2k.many.frag # found chain 1nvmB in training set T0547 221 :NKLLEQFTM 1nvmB 66 :LPEFADIDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36048 # 1x3mA.221.86 read from T0547.t2k.many.frag # found chain 1x3mA in template set T0547 221 :NKLLEQFTM 1x3mA 74 :RDLTDSVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36049 # 1vp4A.221.181 read from T0547.t2k.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)K222 (1vp4A)G171 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (1vp4A)F178 because Y (epsilon') conformation "forbidden" or filtered. T0547 221 :N 1vp4A 170 :N T0547 223 :LLEQFT 1vp4A 172 :KIKQVK Number of specific fragments extracted= 2 number of extra gaps= 2 total=36051 # 1hdhA.221.303 read from T0547.t2k.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)K222 (1hdhA)G305 because L (left) conformation "forbidden" or filtered. T0547 221 :N 1hdhA 304 :Q T0547 223 :LLEQFTM 1hdhA 306 :ELDNTFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36053 # 1r6wA.221.181 read from T0547.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)Q226 because of BadResidue code BAD_PEPTIDE in next template residue (1r6wA)I186 Warning: unaligning (T0547)F227 because of BadResidue code BAD_PEPTIDE at template residue (1r6wA)I186 T0547 221 :NKLLE 1r6wA 180 :PDYRD T0547 228 :TM 1r6wA 187 :AF Number of specific fragments extracted= 2 number of extra gaps= 1 total=36055 # 1c96A.221.342 read from T0547.t2k.many.frag # found chain 1c96A in template set Warning: unaligning (T0547)K222 (1c96A)G345 because L (left) conformation "forbidden" or filtered. T0547 221 :N 1c96A 344 :E T0547 223 :LLEQFTM 1c96A 346 :WPLDIRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36057 # 2bfwA.221.64 read from T0547.t2k.many.frag # found chain 2bfwA in training set T0547 221 :NKLLEQFTM 2bfwA 278 :KKEFQEMRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36058 # 1rcqA.221.146 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 223 :LLEQFTM 1rcqA 149 :KVAKIVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=36059 # 1qyrA.221.110 read from T0547.t2k.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE in next template residue (1qyrA)D131 Warning: unaligning (T0547)E225 because of BadResidue code BAD_PEPTIDE at template residue (1qyrA)D131 Warning: unaligning (T0547)M229 (1qyrA)D135 because Y (epsilon') conformation "forbidden" or filtered. T0547 221 :NKL 1qyrA 127 :FSY T0547 226 :QFT 1qyrA 132 :AIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=36061 # 1xg4A.221.145 read from T0547.t2k.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)K222 (1xg4A)K148 because P (beta_P) conformation "forbidden" or filtered. T0547 221 :N 1xg4A 147 :A T0547 223 :LLEQFTM 1xg4A 149 :TDPDFVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36063 # 1oxwA.221.296 read from T0547.t2k.many.frag # found chain 1oxwA in template set Warning: unaligning (T0547)K222 (1oxwA)D311 because L (left) conformation "forbidden" or filtered. T0547 221 :N 1oxwA 310 :L T0547 223 :LLEQFTM 1oxwA 312 :SKNNYLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=36065 # 1ysjA.221.168 read from T0547.t2k.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)K222 (1ysjA)G146 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1ysjA)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 221 :N 1ysjA 145 :A T0547 223 :LLE 1ysjA 147 :VLN T0547 227 :FTM 1ysjA 151 :VSA Number of specific fragments extracted= 3 number of extra gaps= 2 total=36068 1rljA expands to /projects/compbio/data/pdb/1rlj.pdb.gz 1rljA:# 1rljA.221.67 read from T0547.t2k.many.frag # adding 1rljA to template set # found chain 1rljA in template set Warning: unaligning (T0547)M229 (1rljA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 221 :NKLLEQFT 1rljA 59 :EKYAHLLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36069 # 1ynpA.221.126 read from T0547.t2k.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)L223 (1ynpA)Q109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1ynpA)T110 because Y (epsilon') conformation "forbidden" or filtered. T0547 221 :NK 1ynpA 107 :RL T0547 225 :EQFTM 1ynpA 111 :DYIDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36071 # 1t0hB.221.107 read from T0547.t2k.many.frag # found chain 1t0hB in template set Warning: unaligning (T0547)E225 (1t0hB)L313 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1t0hB)Q314 because P (beta_P) conformation "forbidden" or filtered. T0547 221 :NKLL 1t0hB 309 :LART T0547 227 :FTM 1t0hB 315 :LVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36073 # 1qj4A.221.90 read from T0547.t2k.many.frag # found chain 1qj4A in training set T0547 221 :NKLLEQFTM 1qj4A 91 :DKYCEKIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36074 # 1jixA.221.147 read from T0547.t2k.many.frag # found chain 1jixA in training set T0547 221 :NKLLEQFTM 1jixA 148 :HKKVDNVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36075 # 1h8eA.221.222 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K222 (1h8eA)D224 because L (left) conformation "forbidden" or filtered. T0547 221 :N 1h8eA 223 :A T0547 223 :LLEQFTM 1h8eA 225 :AMKYTIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36077 # 1t7lA.221.298 read from T0547.t2k.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)K222 (1t7lA)G268 because S (epsilon) conformation "forbidden" or filtered. T0547 221 :N 1t7lA 267 :H T0547 223 :LLEQFTM 1t7lA 269 :FPEDKKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36079 # 1vkhA.221.109 read from T0547.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)L223 (1vkhA)G100 because L (left) conformation "forbidden" or filtered. T0547 221 :NK 1vkhA 98 :EK T0547 224 :LEQFTM 1vkhA 101 :LTNINM Number of specific fragments extracted= 2 number of extra gaps= 1 total=36081 1noyA expands to /projects/compbio/data/pdb/1noy.pdb.gz 1noyA:# 1noyA.221.176 read from T0547.t2k.many.frag # adding 1noyA to template set # found chain 1noyA in template set T0547 221 :NKLLEQFTM 1noyA 177 :QEILDRVIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36082 1srqA expands to /projects/compbio/data/pdb/1srq.pdb.gz 1srqA:# 1srqA.221.112 read from T0547.t2k.many.frag # adding 1srqA to template set # found chain 1srqA in template set T0547 221 :NKLLEQFTM 1srqA 187 :HVISNNFKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36083 # 2apjA.221.186 read from T0547.t2k.many.frag # found chain 2apjA in training set T0547 221 :NKLLEQFTM 2apjA 187 :DLNLPSLPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36084 # 1us0A.221.98 read from T0547.t2k.many.frag # found chain 1us0A in training set Warning: unaligning (T0547)L223 (1us0A)K100 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1us0A)Y103 because Y (epsilon') conformation "forbidden" or filtered. T0547 221 :NK 1us0A 98 :DL T0547 224 :LE 1us0A 101 :LD T0547 227 :FTM 1us0A 104 :LDL Number of specific fragments extracted= 3 number of extra gaps= 2 total=36087 # 1ra0A.221.239 read from T0547.t2k.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)N221 (1ra0A)E236 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1ra0A)G237 because L (left) conformation "forbidden" or filtered. T0547 223 :LLEQFTM 1ra0A 238 :MGARVTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=36088 # 1ufaA.221.130 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 221 :NKLLEQFTM 1ufaA 131 :AEEGGQVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36089 # 2b9eA.221.166 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 221 :NKLLEQFTM 2b9eA 293 :DPRYHEVHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36090 # 1t3tA.221.953 read from T0547.t2k.many.frag # found chain 1t3tA in template set T0547 221 :NKLLEQFTM 1t3tA 946 :YGLADCVHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36091 # 1eyeA.221.166 read from T0547.t2k.many.frag # found chain 1eyeA in template set Warning: unaligning (T0547)K222 (1eyeA)G168 because T (delta_L) conformation "forbidden" or filtered. T0547 221 :N 1eyeA 167 :A T0547 223 :LLEQFTM 1eyeA 169 :VDPARLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36093 1t13A expands to /projects/compbio/data/pdb/1t13.pdb.gz 1t13A:# 1t13A.221.66 read from T0547.t2k.many.frag # adding 1t13A to template set # found chain 1t13A in template set T0547 221 :NKLLEQFTM 1t13A 69 :TGRYAAIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36094 # 1x3mA.222.87 read from T0547.t2k.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)K222 (1x3mA)D75 because L (left) conformation "forbidden" or filtered. T0547 223 :LLEQFTMI 1x3mA 76 :LTDSVALI Number of specific fragments extracted= 1 number of extra gaps= 1 total=36095 # 1nvmB.222.66 read from T0547.t2k.many.frag # found chain 1nvmB in training set T0547 222 :KLLEQFTMI 1nvmB 67 :PEFADIDFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36096 # 1r6wA.222.182 read from T0547.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)Q226 because of BadResidue code BAD_PEPTIDE in next template residue (1r6wA)I186 Warning: unaligning (T0547)F227 because of BadResidue code BAD_PEPTIDE at template residue (1r6wA)I186 Warning: unaligning (T0547)M229 (1r6wA)F188 because Y (epsilon') conformation "forbidden" or filtered. T0547 222 :KLLE 1r6wA 181 :DYRD T0547 228 :T 1r6wA 187 :A T0547 230 :I 1r6wA 189 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=36099 # 1qyrA.222.111 read from T0547.t2k.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE in next template residue (1qyrA)D131 Warning: unaligning (T0547)E225 because of BadResidue code BAD_PEPTIDE at template residue (1qyrA)D131 Warning: unaligning (T0547)M229 (1qyrA)D135 because Y (epsilon') conformation "forbidden" or filtered. T0547 222 :KL 1qyrA 128 :SY T0547 226 :QFT 1qyrA 132 :AIA T0547 230 :I 1qyrA 136 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=36102 # 1hdhA.222.304 read from T0547.t2k.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)K222 (1hdhA)G305 because L (left) conformation "forbidden" or filtered. T0547 223 :LLEQFTMI 1hdhA 306 :ELDNTFVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36103 # 1ynpA.222.127 read from T0547.t2k.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)L223 (1ynpA)Q109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1ynpA)T110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1ynpA)Y112 because E (beta_S) conformation "forbidden" or filtered. T0547 222 :K 1ynpA 108 :L T0547 225 :E 1ynpA 111 :D T0547 227 :FTMI 1ynpA 113 :IDLY Number of specific fragments extracted= 3 number of extra gaps= 2 total=36106 # 1jixA.222.148 read from T0547.t2k.many.frag # found chain 1jixA in training set T0547 222 :KLLEQFTMI 1jixA 149 :KKVDNVIEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36107 # 1rljA.222.68 read from T0547.t2k.many.frag # found chain 1rljA in template set Warning: unaligning (T0547)M229 (1rljA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 222 :KLLEQFT 1rljA 60 :KYAHLLL T0547 230 :I 1rljA 68 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=36109 # 1vp4A.222.182 read from T0547.t2k.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)K222 (1vp4A)G171 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (1vp4A)F178 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLEQFT 1vp4A 172 :KIKQVK T0547 230 :I 1vp4A 179 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=36111 # 1qj4A.222.91 read from T0547.t2k.many.frag # found chain 1qj4A in training set T0547 222 :KLLEQFTMI 1qj4A 92 :KYCEKIAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36112 # 1xg4A.222.146 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 222 :KLLEQFTMI 1xg4A 148 :KTDPDFVIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36113 # 1t7lA.222.299 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 222 :KLLEQFTMI 1t7lA 268 :GFPEDKKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36114 # 1srqA.222.113 read from T0547.t2k.many.frag # found chain 1srqA in template set T0547 222 :KLLEQFTMI 1srqA 188 :VISNNFKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36115 # 1us0A.222.99 read from T0547.t2k.many.frag # found chain 1us0A in training set Warning: unaligning (T0547)L223 (1us0A)K100 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1us0A)Y103 because Y (epsilon') conformation "forbidden" or filtered. T0547 222 :K 1us0A 99 :L T0547 224 :LE 1us0A 101 :LD T0547 227 :FTMI 1us0A 104 :LDLY Number of specific fragments extracted= 3 number of extra gaps= 2 total=36118 # 1onwA.222.152 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)I230 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1onwA)C163 T0547 222 :KLLEQFTM 1onwA 153 :AIIDRVIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36119 # 2apjA.222.187 read from T0547.t2k.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)K222 (2apjA)L188 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L223 (2apjA)N189 because L (left) conformation "forbidden" or filtered. T0547 224 :LEQFTMI 2apjA 190 :LPSLPII Number of specific fragments extracted= 1 number of extra gaps= 1 total=36120 # 1c96A.222.343 read from T0547.t2k.many.frag # found chain 1c96A in template set T0547 222 :KLLEQFTMI 1c96A 345 :GWPLDIRVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36121 # 1rcqA.222.147 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 223 :LLEQFTMI 1rcqA 149 :KVAKIVMM Number of specific fragments extracted= 1 number of extra gaps= 1 total=36122 2bduA expands to /projects/compbio/data/pdb/2bdu.pdb.gz 2bduA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1944, because occupancy 0.350 <= existing 0.650 in 2bduA Skipped atom 1946, because occupancy 0.350 <= existing 0.650 in 2bduA Skipped atom 1948, because occupancy 0.350 <= existing 0.650 in 2bduA Skipped atom 1950, because occupancy 0.350 <= existing 0.650 in 2bduA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2bduA.222.38 read from T0547.t2k.many.frag # adding 2bduA to template set # found chain 2bduA in template set Warning: unaligning (T0547)L223 (2bduA)G40 because S (epsilon) conformation "forbidden" or filtered. T0547 222 :K 2bduA 39 :G T0547 224 :LEQFTMI 2bduA 41 :AAKLQII Number of specific fragments extracted= 2 number of extra gaps= 1 total=36124 # 2bfwA.222.65 read from T0547.t2k.many.frag # found chain 2bfwA in training set T0547 222 :KLLEQFTMI 2bfwA 279 :KEFQEMRFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36125 # 1nt2A.222.121 read from T0547.t2k.many.frag # found chain 1nt2A in template set Warning: unaligning (T0547)Q226 (1nt2A)K126 because P (beta_P) conformation "forbidden" or filtered. T0547 222 :KLLE 1nt2A 122 :GIVE T0547 227 :FTMI 1nt2A 127 :VDLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36127 # 1qsgA.222.82 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)M229 (1qsgA)G87 because S (epsilon) conformation "forbidden" or filtered. T0547 222 :KLLEQFT 1qsgA 80 :KVWPKFD T0547 230 :I 1qsgA 88 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=36129 # 1v58A.222.122 read from T0547.t2k.many.frag # found chain 1v58A in training set T0547 222 :KLLEQFTMI 1v58A 123 :VDSGKVQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36130 # 2b9eA.222.167 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 222 :KLLEQFTMI 2b9eA 294 :PRYHEVHYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36131 # 1duvG.222.262 read from T0547.t2k.many.frag # found chain 1duvG in training set T0547 222 :KLLEQFTMI 1duvG 263 :TGNPEVKFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36132 1xqwA expands to /projects/compbio/data/pdb/1xqw.pdb.gz 1xqwA:# 1xqwA.222.116 read from T0547.t2k.many.frag # adding 1xqwA to template set # found chain 1xqwA in template set T0547 222 :KLLEQFTMI 1xqwA 117 :KYQDHLKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36133 # 1su8A.222.431 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)M229 (1su8A)G439 because Y (epsilon') conformation "forbidden" or filtered. T0547 222 :KLLEQFT 1su8A 432 :VVNGNIR T0547 230 :I 1su8A 440 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=36135 # 1ysjA.222.169 read from T0547.t2k.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)K222 (1ysjA)G146 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1ysjA)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 223 :LLE 1ysjA 147 :VLN T0547 227 :FTMI 1ysjA 151 :VSAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=36137 # 1t13A.222.67 read from T0547.t2k.many.frag # found chain 1t13A in template set Warning: unaligning (T0547)K222 (1t13A)G70 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1t13A)A74 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLE 1t13A 71 :RYA T0547 227 :FTMI 1t13A 75 :IVGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=36139 # 1vkhA.222.110 read from T0547.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)Q226 (1vkhA)N103 because Y (epsilon') conformation "forbidden" or filtered. T0547 222 :KLLE 1vkhA 99 :KGLT T0547 227 :FTMI 1vkhA 104 :INMV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36141 # 1x3mA.223.88 read from T0547.t2k.many.frag # found chain 1x3mA in template set T0547 223 :LLEQFTMIH 1x3mA 76 :LTDSVALIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36142 # 1t7lA.223.300 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 223 :LLEQFTMIH 1t7lA 269 :FPEDKKLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36143 # 1ynpA.223.128 read from T0547.t2k.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)L223 (1ynpA)Q109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1ynpA)T110 because Y (epsilon') conformation "forbidden" or filtered. T0547 225 :EQFTMIH 1ynpA 111 :DYIDLYQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=36144 # 1qyrA.223.112 read from T0547.t2k.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE in next template residue (1qyrA)D131 Warning: unaligning (T0547)E225 because of BadResidue code BAD_PEPTIDE at template residue (1qyrA)D131 Warning: unaligning (T0547)M229 (1qyrA)D135 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :L 1qyrA 129 :Y T0547 226 :QFT 1qyrA 132 :AIA T0547 230 :IH 1qyrA 136 :MH Number of specific fragments extracted= 3 number of extra gaps= 2 total=36147 # 1nvmB.223.67 read from T0547.t2k.many.frag # found chain 1nvmB in training set T0547 223 :LLEQFTMIH 1nvmB 68 :EFADIDFVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36148 # 1xg4A.223.147 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 223 :LLEQFTMIH 1xg4A 149 :TDPDFVIMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36149 # 1jixA.223.149 read from T0547.t2k.many.frag # found chain 1jixA in training set T0547 223 :LLEQFTMIH 1jixA 150 :KVDNVIEFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36150 # 1rljA.223.69 read from T0547.t2k.many.frag # found chain 1rljA in template set Warning: unaligning (T0547)M229 (1rljA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLEQFT 1rljA 61 :YAHLLL T0547 230 :IH 1rljA 68 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=36152 # 1qj4A.223.92 read from T0547.t2k.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)M229 (1qj4A)A99 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLEQFT 1qj4A 93 :YCEKIA T0547 230 :IH 1qj4A 100 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36154 # 1r6wA.223.183 read from T0547.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)Q226 because of BadResidue code BAD_PEPTIDE in next template residue (1r6wA)I186 Warning: unaligning (T0547)F227 because of BadResidue code BAD_PEPTIDE at template residue (1r6wA)I186 Warning: unaligning (T0547)M229 (1r6wA)F188 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLE 1r6wA 182 :YRD T0547 228 :T 1r6wA 187 :A T0547 230 :IH 1r6wA 189 :LE Number of specific fragments extracted= 3 number of extra gaps= 2 total=36157 # 2bduA.223.39 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)L223 (2bduA)G40 because S (epsilon) conformation "forbidden" or filtered. T0547 224 :LEQFTMIH 2bduA 41 :AAKLQIIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=36158 # 1hdhA.223.305 read from T0547.t2k.many.frag # found chain 1hdhA in training set T0547 223 :LLEQFTMIH 1hdhA 306 :ELDNTFVLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36159 # 1onwA.223.153 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)M229 (1onwA)G160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I230 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1onwA)C163 T0547 223 :LLEQFT 1onwA 154 :IIDRVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=36160 # 2apjA.223.188 read from T0547.t2k.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)L223 (2apjA)N189 because L (left) conformation "forbidden" or filtered. T0547 224 :LEQFTMIH 2apjA 190 :LPSLPIIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=36161 # 1srqA.223.114 read from T0547.t2k.many.frag # found chain 1srqA in template set T0547 223 :LLEQFTMIH 1srqA 189 :ISNNFKFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36162 # 1us0A.223.100 read from T0547.t2k.many.frag # found chain 1us0A in training set Warning: unaligning (T0547)L223 (1us0A)K100 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1us0A)Y103 because Y (epsilon') conformation "forbidden" or filtered. T0547 224 :LE 1us0A 101 :LD T0547 227 :FTMIH 1us0A 104 :LDLYL Number of specific fragments extracted= 2 number of extra gaps= 2 total=36164 # 1vp4A.223.183 read from T0547.t2k.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)M229 (1vp4A)F178 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLEQFT 1vp4A 172 :KIKQVK T0547 230 :IH 1vp4A 179 :IY Number of specific fragments extracted= 2 number of extra gaps= 1 total=36166 # 1duvG.223.263 read from T0547.t2k.many.frag # found chain 1duvG in training set Warning: unaligning (T0547)L223 (1duvG)G264 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H231 (1duvG)H272 because E (beta_S) conformation "forbidden" or filtered. T0547 224 :LEQFTMI 1duvG 265 :NPEVKFL Number of specific fragments extracted= 1 number of extra gaps= 2 total=36167 # 1nt2A.223.122 read from T0547.t2k.many.frag # found chain 1nt2A in template set T0547 223 :LLEQFTMIH 1nt2A 123 :IVEKVDLIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36168 # 1t13A.223.68 read from T0547.t2k.many.frag # found chain 1t13A in template set Warning: unaligning (T0547)Q226 (1t13A)A74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H231 (1t13A)A79 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLE 1t13A 71 :RYA T0547 227 :FTMI 1t13A 75 :IVGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=36170 # 1qsgA.223.83 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)M229 (1qsgA)G87 because S (epsilon) conformation "forbidden" or filtered. T0547 223 :LLEQFT 1qsgA 81 :VWPKFD T0547 230 :IH 1qsgA 88 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36172 # 1ne9A.223.97 read from T0547.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)L224 (1ne9A)D99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (1ne9A)V104 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :L 1ne9A 98 :L T0547 225 :EQFT 1ne9A 100 :GRAY T0547 230 :IH 1ne9A 105 :LR Number of specific fragments extracted= 3 number of extra gaps= 2 total=36175 # 2b9eA.223.168 read from T0547.t2k.many.frag # found chain 2b9eA in training set T0547 223 :LLEQFTMIH 2b9eA 295 :RYHEVHYIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36176 1qlmA expands to /projects/compbio/data/pdb/1qlm.pdb.gz 1qlmA:Skipped atom 67, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 68, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 69, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 421, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 422, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 459, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 460, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 461, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 1544, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 1545, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 1546, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 1809, because occupancy 0.330 <= existing 0.670 in 1qlmA Skipped atom 1810, because occupancy 0.330 <= existing 0.670 in 1qlmA Skipped atom 1811, because occupancy 0.330 <= existing 0.670 in 1qlmA Skipped atom 1841, because occupancy 1.000 <= existing 1.000 in 1qlmA Skipped atom 1842, because occupancy 1.000 <= existing 1.000 in 1qlmA Skipped atom 1843, because occupancy 1.000 <= existing 1.000 in 1qlmA Skipped atom 1844, because occupancy 1.000 <= existing 1.000 in 1qlmA # 1qlmA.223.159 read from T0547.t2k.many.frag # adding 1qlmA to template set # found chain 1qlmA in template set T0547 223 :LLEQFTMIH 1qlmA 160 :DPENLYLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36177 # 1chd.223.124 read from T0547.t2k.many.frag # found chain 1chd in training set T0547 223 :LLEQFTMIH 1chd 271 :AGRNAVGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36178 # 1ysjA.223.170 read from T0547.t2k.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)Q226 (1ysjA)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 223 :LLE 1ysjA 147 :VLN T0547 227 :FTMIH 1ysjA 151 :VSAIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=36180 # 1rcqA.223.148 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 223 :LLEQFTMIH 1rcqA 149 :KVAKIVMMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36181 # 1vliA.223.215 read from T0547.t2k.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)M229 (1vliA)G210 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLEQFT 1vliA 204 :FPEAVI T0547 230 :IH 1vliA 211 :FS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36183 # 1sg4A.223.44 read from T0547.t2k.many.frag # found chain 1sg4A in training set T0547 223 :LLEQFTMIH 1sg4A 45 :NDKSFRGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36184 # 1wuiS.223.100 read from T0547.t2k.many.frag # found chain 1wuiS in training set T0547 223 :LLEQFTMIH 1wuiS 101 :ILPKAQAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36185 # 1t7lA.224.301 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 224 :LEQFTMIHF 1t7lA 270 :PEDKKLVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36186 # 2bduA.224.40 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 224 :LEQFTMIHF 2bduA 41 :AAKLQIITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36187 # 1x3mA.224.89 read from T0547.t2k.many.frag # found chain 1x3mA in template set T0547 224 :LEQFTMIHF 1x3mA 77 :TDSVALIGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36188 # 1qyrA.224.113 read from T0547.t2k.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE in next template residue (1qyrA)D131 Warning: unaligning (T0547)E225 because of BadResidue code BAD_PEPTIDE at template residue (1qyrA)D131 T0547 226 :QFTMIHF 1qyrA 132 :AIADMHF Number of specific fragments extracted= 1 number of extra gaps= 1 total=36189 # 1ynpA.224.129 read from T0547.t2k.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)Q226 (1ynpA)Y112 because E (beta_S) conformation "forbidden" or filtered. T0547 224 :LE 1ynpA 110 :TD T0547 227 :FTMIHF 1ynpA 113 :IDLYQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36191 # 1onwA.224.154 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)M229 (1onwA)G160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I230 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1onwA)C163 Warning: unaligning (T0547)F232 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1onwA)C163 T0547 224 :LEQFT 1onwA 155 :IDRVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=36192 # 2apjA.224.189 read from T0547.t2k.many.frag # found chain 2apjA in training set T0547 224 :LEQFTMIHF 2apjA 190 :LPSLPIIQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36193 # 1qj4A.224.93 read from T0547.t2k.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)M229 (1qj4A)A99 because Y (epsilon') conformation "forbidden" or filtered. T0547 224 :LEQFT 1qj4A 94 :CEKIA T0547 230 :IHF 1qj4A 100 :AVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=36195 # 7odcA.224.187 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L224 (7odcA)N188 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (7odcA)G193 because Y (epsilon') conformation "forbidden" or filtered. T0547 225 :EQFT 7odcA 189 :IDVI T0547 230 :IHF 7odcA 194 :VSF Number of specific fragments extracted= 2 number of extra gaps= 2 total=36197 # 1jixA.224.150 read from T0547.t2k.many.frag # found chain 1jixA in training set T0547 224 :LEQFTMIHF 1jixA 151 :VDNVIEFEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36198 # 1rljA.224.70 read from T0547.t2k.many.frag # found chain 1rljA in template set Warning: unaligning (T0547)M229 (1rljA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 224 :LEQFT 1rljA 62 :AHLLL T0547 230 :IHF 1rljA 68 :VAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=36200 # 1xg4A.224.148 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 224 :LEQFTMIHF 1xg4A 150 :DPDFVIMAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36201 # 1nvmB.224.68 read from T0547.t2k.many.frag # found chain 1nvmB in training set T0547 224 :LEQFTMIHF 1nvmB 69 :FADIDFVFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36202 # 1knwA.224.181 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L224 (1knwA)H182 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (1knwA)G187 because Y (epsilon') conformation "forbidden" or filtered. T0547 225 :EQFT 1knwA 183 :LQLV T0547 230 :IHF 1knwA 188 :IHM Number of specific fragments extracted= 2 number of extra gaps= 2 total=36204 # 1us0A.224.101 read from T0547.t2k.many.frag # found chain 1us0A in training set Warning: unaligning (T0547)Q226 (1us0A)Y103 because Y (epsilon') conformation "forbidden" or filtered. T0547 224 :LE 1us0A 101 :LD T0547 227 :FTMIHF 1us0A 104 :LDLYLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36206 # 2axoA.224.69 read from T0547.t2k.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)E225 (2axoA)G71 because T (delta_L) conformation "forbidden" or filtered. T0547 224 :L 2axoA 70 :K T0547 226 :QFTMIHF 2axoA 72 :DVVGLSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=36208 1v8bA expands to /projects/compbio/data/pdb/1v8b.pdb.gz 1v8bA:# 1v8bA.224.190 read from T0547.t2k.many.frag # adding 1v8bA to template set # found chain 1v8bA in template set Warning: unaligning (T0547)M229 (1v8bA)G196 because Y (epsilon') conformation "forbidden" or filtered. T0547 224 :LEQFT 1v8bA 191 :AKKII T0547 230 :IHF 1v8bA 197 :VSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36210 # 1nt2A.224.123 read from T0547.t2k.many.frag # found chain 1nt2A in template set T0547 224 :LEQFTMIHF 1nt2A 124 :VEKVDLIYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36211 1u8xX expands to /projects/compbio/data/pdb/1u8x.pdb.gz 1u8xX:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1u8xX.224.99 read from T0547.t2k.many.frag # adding 1u8xX to template set # found chain 1u8xX in template set T0547 224 :LEQFTMIHF 1u8xX 77 :FTDVDFVMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36212 # 2bogX.224.177 read from T0547.t2k.many.frag # found chain 2bogX in training set T0547 224 :LEQFTMIHF 2bogX 178 :SNSAHGIAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36213 # 1y5mA.224.93 read from T0547.t2k.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)E225 (1y5mA)G111 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1y5mA)G112 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H231 (1y5mA)I117 because D (zeta) conformation "forbidden" or filtered. T0547 224 :L 1y5mA 110 :M T0547 227 :FTMI 1y5mA 113 :LDML T0547 232 :F 1y5mA 118 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=36216 1xtpA expands to /projects/compbio/data/pdb/1xtp.pdb.gz 1xtpA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1724, because occupancy 0.350 <= existing 0.650 in 1xtpA Skipped atom 1726, because occupancy 0.350 <= existing 0.650 in 1xtpA Skipped atom 1728, because occupancy 0.350 <= existing 0.650 in 1xtpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xtpA.224.155 read from T0547.t2k.many.frag # adding 1xtpA to template set # found chain 1xtpA in template set Warning: unaligning (T0547)E225 (1xtpA)N157 because L (left) conformation "forbidden" or filtered. T0547 224 :L 1xtpA 156 :P T0547 226 :QFTMIHF 1xtpA 158 :TYDLIVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36218 # 1wuiS.224.101 read from T0547.t2k.many.frag # found chain 1wuiS in training set T0547 224 :LEQFTMIHF 1wuiS 102 :LPKAQAVIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36219 # 1ne9A.224.98 read from T0547.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)E225 (1ne9A)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (1ne9A)V104 because Y (epsilon') conformation "forbidden" or filtered. T0547 224 :L 1ne9A 99 :D T0547 226 :QFT 1ne9A 101 :RAY T0547 230 :IHF 1ne9A 105 :LRF Number of specific fragments extracted= 3 number of extra gaps= 2 total=36222 1kjnA expands to /projects/compbio/data/pdb/1kjn.pdb.gz 1kjnA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1kjnA.224.75 read from T0547.t2k.many.frag # adding 1kjnA to template set # found chain 1kjnA in template set T0547 224 :LEQFTMIHF 1kjnA 76 :EGDYEFLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36223 # 1su8A.224.433 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 224 :LEQFTMIHF 1su8A 434 :NGNIRGVCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36224 # 1qsgA.224.84 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)Q226 (1qsgA)K84 because E (beta_S) conformation "forbidden" or filtered. T0547 224 :LE 1qsgA 82 :WP T0547 227 :FTMIHF 1qsgA 85 :FDGFVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=36226 # 1ysjA.224.171 read from T0547.t2k.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)Q226 (1ysjA)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 224 :LE 1ysjA 148 :LN T0547 227 :FTMIHF 1ysjA 151 :VSAIFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=36228 # 1srqA.224.115 read from T0547.t2k.many.frag # found chain 1srqA in template set T0547 224 :LEQFTMIHF 1srqA 190 :SNNFKFGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36229 1qvzA expands to /projects/compbio/data/pdb/1qvz.pdb.gz 1qvzA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 589, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 591, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 593, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 595, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 597, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 599, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 601, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 603, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 605, because occupancy 0.500 <= existing 0.500 in 1qvzA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: OD for alphabet: pdb_atoms Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1731, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 1733, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 1735, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 1737, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 1739, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 1741, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 1773, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 1775, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 1777, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 1779, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 1781, because occupancy 0.500 <= existing 0.500 in 1qvzA Skipped atom 1783, because occupancy 0.500 <= existing 0.500 in 1qvzA # 1qvzA.224.95 read from T0547.t2k.many.frag # adding 1qvzA to template set # found chain 1qvzA in template set T0547 224 :LEQFTMIHF 1qvzA 96 :ADDYQIFMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36230 # 7odcA.225.188 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 225 :EQFTMIHFH 7odcA 189 :IDVIGVSFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36231 # 1knwA.225.182 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)M229 (1knwA)G187 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H231 (1knwA)H189 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 (1knwA)H191 because D (zeta) conformation "forbidden" or filtered. T0547 225 :EQFT 1knwA 183 :LQLV T0547 230 :I 1knwA 188 :I T0547 232 :F 1knwA 190 :M Number of specific fragments extracted= 3 number of extra gaps= 3 total=36234 # 2apjA.225.190 read from T0547.t2k.many.frag # found chain 2apjA in training set T0547 225 :EQFTMIHFH 2apjA 191 :PSLPIIQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36235 # 1t7lA.225.302 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 225 :EQFTMIHFH 1t7lA 271 :EDKKLVAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36236 # 1qyrA.225.114 read from T0547.t2k.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)E225 because of BadResidue code BAD_PEPTIDE at template residue (1qyrA)D131 Warning: unaligning (T0547)M229 (1qyrA)D135 because Y (epsilon') conformation "forbidden" or filtered. T0547 226 :QFT 1qyrA 132 :AIA T0547 230 :IHFH 1qyrA 136 :MHFM Number of specific fragments extracted= 2 number of extra gaps= 2 total=36238 # 1kjnA.225.76 read from T0547.t2k.many.frag # found chain 1kjnA in template set T0547 225 :EQFTMIHFH 1kjnA 77 :GDYEFLAGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36239 # 1ynpA.225.130 read from T0547.t2k.many.frag # found chain 1ynpA in training set T0547 225 :EQFTMIHFH 1ynpA 111 :DYIDLYQLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36240 # 1x3mA.225.90 read from T0547.t2k.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)H233 (1x3mA)R86 because P (beta_P) conformation "forbidden" or filtered. T0547 225 :EQFTMIHF 1x3mA 78 :DSVALIGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=36241 # 2bduA.225.41 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 225 :EQFTMIHFH 2bduA 42 :AKLQIITDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36242 # 1ox0A.225.313 read from T0547.t2k.many.frag # found chain 1ox0A in training set T0547 225 :EQFTMIHFH 1ox0A 295 :EQVAYVNAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36243 # 1onwA.225.155 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)M229 (1onwA)G160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I230 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1onwA)C163 Warning: unaligning (T0547)F232 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1onwA)C163 T0547 225 :EQFT 1onwA 156 :DRVI T0547 233 :H 1onwA 164 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=36245 # 1nmoA.225.162 read from T0547.t2k.many.frag # found chain 1nmoA in template set T0547 225 :EQFTMIHFH 1nmoA 163 :EVVQRVAWC Number of specific fragments extracted= 1 number of extra gaps= 0 total=36246 # 1gudA.225.57 read from T0547.t2k.many.frag # found chain 1gudA in training set Warning: unaligning (T0547)E225 (1gudA)K58 because Y (epsilon') conformation "forbidden" or filtered. T0547 226 :QFTMIHFH 1gudA 59 :NYKGIAFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=36247 # 1qj4A.225.94 read from T0547.t2k.many.frag # found chain 1qj4A in training set T0547 225 :EQFTMIHFH 1qj4A 95 :EKIAAAVFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36248 # 1u8xX.225.100 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)Q226 (1u8xX)D79 because L (left) conformation "forbidden" or filtered. T0547 225 :E 1u8xX 78 :T T0547 227 :FTMIHFH 1u8xX 80 :VDFVMAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=36250 # 2axoA.225.70 read from T0547.t2k.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)E225 (2axoA)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 (2axoA)H79 because P (beta_P) conformation "forbidden" or filtered. T0547 226 :QFTMIHF 2axoA 72 :DVVGLSY Number of specific fragments extracted= 1 number of extra gaps= 2 total=36251 # 1xtpA.225.156 read from T0547.t2k.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)E225 (1xtpA)N157 because L (left) conformation "forbidden" or filtered. T0547 226 :QFTMIHFH 1xtpA 158 :TYDLIVIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=36252 # 1su8A.225.434 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)M229 (1su8A)G439 because Y (epsilon') conformation "forbidden" or filtered. T0547 225 :EQFT 1su8A 435 :GNIR T0547 230 :IHFH 1su8A 440 :VCLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=36254 # 1us0A.225.102 read from T0547.t2k.many.frag # found chain 1us0A in training set T0547 225 :EQFTMIHFH 1us0A 102 :DYLDLYLIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36255 # 1xg4A.225.149 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 225 :EQFTMIHFH 1xg4A 151 :PDFVIMART Number of specific fragments extracted= 1 number of extra gaps= 0 total=36256 # 1rljA.225.71 read from T0547.t2k.many.frag # found chain 1rljA in template set Warning: unaligning (T0547)M229 (1rljA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 225 :EQFT 1rljA 63 :HLLL T0547 230 :IHFH 1rljA 68 :VAAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36258 # 1jixA.225.151 read from T0547.t2k.many.frag # found chain 1jixA in training set T0547 225 :EQFTMIHFH 1jixA 152 :DNVIEFEYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36259 # 1i4wA.225.57 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)H233 (1i4wA)Y54 because L (left) conformation "forbidden" or filtered. T0547 225 :EQFTMIHF 1i4wA 46 :EELKVLDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36260 # 1y5mA.225.94 read from T0547.t2k.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)E225 (1y5mA)G111 because L (left) conformation "forbidden" or filtered. T0547 226 :QFTMIHFH 1y5mA 112 :GLDMLILN Number of specific fragments extracted= 1 number of extra gaps= 1 total=36261 # 1qsgA.225.85 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 225 :EQFTMIHFH 1qsgA 83 :PKFDGFVHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36262 # 1wuiS.225.102 read from T0547.t2k.many.frag # found chain 1wuiS in training set T0547 225 :EQFTMIHFH 1wuiS 103 :PKAQAVIAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36263 # 1ne9A.225.99 read from T0547.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)E225 (1ne9A)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (1ne9A)V104 because Y (epsilon') conformation "forbidden" or filtered. T0547 226 :QFT 1ne9A 101 :RAY T0547 230 :IHFH 1ne9A 105 :LRFD Number of specific fragments extracted= 2 number of extra gaps= 2 total=36265 # 1nt2A.225.124 read from T0547.t2k.many.frag # found chain 1nt2A in template set T0547 225 :EQFTMIHFH 1nt2A 125 :EKVDLIYQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36266 1t71A expands to /projects/compbio/data/pdb/1t71.pdb.gz 1t71A:# 1t71A.225.149 read from T0547.t2k.many.frag # adding 1t71A to template set # found chain 1t71A in template set Warning: unaligning (T0547)E225 (1t71A)C150 because Y (epsilon') conformation "forbidden" or filtered. T0547 226 :QFTMIHFH 1t71A 151 :DLHIVDFH Number of specific fragments extracted= 1 number of extra gaps= 1 total=36267 # 1vliA.225.217 read from T0547.t2k.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)M229 (1vliA)G210 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H231 (1vliA)S212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 (1vliA)H214 because G (3-10) conformation "forbidden" or filtered. T0547 225 :EQFT 1vliA 206 :EAVI T0547 230 :I 1vliA 211 :F T0547 232 :F 1vliA 213 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=36270 # 7odcA.226.189 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)M229 (7odcA)G193 because Y (epsilon') conformation "forbidden" or filtered. T0547 226 :QFT 7odcA 190 :DVI T0547 230 :IHFHL 7odcA 194 :VSFHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36272 # 1knwA.226.183 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)H231 (1knwA)H189 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 (1knwA)H191 because D (zeta) conformation "forbidden" or filtered. T0547 226 :QFTMI 1knwA 184 :QLVGI T0547 232 :F 1knwA 190 :M T0547 234 :L 1knwA 192 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=36275 # 2apjA.226.191 read from T0547.t2k.many.frag # found chain 2apjA in training set T0547 226 :QFTMIHFHL 2apjA 192 :SLPIIQVAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36276 # 1t7lA.226.303 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 226 :QFTMIHFHL 1t7lA 272 :DKKLVAGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36277 # 2axoA.226.71 read from T0547.t2k.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)H233 (2axoA)H79 because P (beta_P) conformation "forbidden" or filtered. T0547 226 :QFTMIHF 2axoA 72 :DVVGLSY T0547 234 :L 2axoA 80 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=36279 # 1onwA.226.156 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)M229 (1onwA)G160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I230 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1onwA)C163 Warning: unaligning (T0547)F232 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1onwA)C163 T0547 226 :QFT 1onwA 157 :RVI T0547 233 :HL 1onwA 164 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36281 # 1gudA.226.58 read from T0547.t2k.many.frag # found chain 1gudA in training set T0547 226 :QFTMIHFHL 1gudA 59 :NYKGIAFAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36282 # 1ynpA.226.131 read from T0547.t2k.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)H233 (1ynpA)H119 because E (beta_S) conformation "forbidden" or filtered. T0547 226 :QFTMIHF 1ynpA 112 :YIDLYQL T0547 234 :L 1ynpA 120 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=36284 # 1kjnA.226.77 read from T0547.t2k.many.frag # found chain 1kjnA in template set Warning: unaligning (T0547)H233 (1kjnA)F85 because P (beta_P) conformation "forbidden" or filtered. T0547 226 :QFTMIHF 1kjnA 78 :DYEFLAG T0547 234 :L 1kjnA 86 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=36286 # 1nmoA.226.163 read from T0547.t2k.many.frag # found chain 1nmoA in template set Warning: unaligning (T0547)M229 (1nmoA)R167 because P (beta_P) conformation "forbidden" or filtered. T0547 226 :QFT 1nmoA 164 :VVQ T0547 230 :IHFHL 1nmoA 168 :VAWCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=36288 # 7a3hA.226.93 read from T0547.t2k.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 T0547 226 :QFTMIH 7a3hA 94 :IYVIID T0547 234 :L 7a3hA 102 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=36290 # 1su8A.226.435 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 226 :QFTMIHFHL 1su8A 436 :NIRGVCLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36291 # 1x3mA.226.91 read from T0547.t2k.many.frag # found chain 1x3mA in template set T0547 226 :QFTMIHFHL 1x3mA 79 :SVALIGHRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36292 # 1xtpA.226.157 read from T0547.t2k.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)L234 (1xtpA)W166 because L (left) conformation "forbidden" or filtered. T0547 226 :QFTMIHFH 1xtpA 158 :TYDLIVIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=36293 # 1ox0A.226.314 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)L234 (1ox0A)G304 because L (left) conformation "forbidden" or filtered. T0547 226 :QFTMIHFH 1ox0A 296 :QVAYVNAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=36294 # 1xg4A.226.150 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 226 :QFTMIHFHL 1xg4A 152 :DFVIMARTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36295 # 1qyrA.226.115 read from T0547.t2k.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)M229 (1qyrA)D135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1qyrA)L140 because Y (epsilon') conformation "forbidden" or filtered. T0547 226 :QFT 1qyrA 132 :AIA T0547 230 :IHFH 1qyrA 136 :MHFM Number of specific fragments extracted= 2 number of extra gaps= 2 total=36297 # 1i4wA.226.58 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)H233 (1i4wA)Y54 because L (left) conformation "forbidden" or filtered. T0547 226 :QFTMIHF 1i4wA 47 :ELKVLDL T0547 234 :L 1i4wA 55 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=36299 # 2bduA.226.42 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 226 :QFTMIHFHL 2bduA 43 :KLQIITDFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36300 # 1qj4A.226.95 read from T0547.t2k.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)M229 (1qj4A)A99 because Y (epsilon') conformation "forbidden" or filtered. T0547 226 :QFT 1qj4A 96 :KIA T0547 230 :IHFHL 1qj4A 100 :AVFHN Number of specific fragments extracted= 2 number of extra gaps= 1 total=36302 # 1rljA.226.72 read from T0547.t2k.many.frag # found chain 1rljA in template set Warning: unaligning (T0547)M229 (1rljA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 (1rljA)S71 because P (beta_P) conformation "forbidden" or filtered. T0547 226 :QFT 1rljA 64 :LLL T0547 230 :IHF 1rljA 68 :VAA T0547 234 :L 1rljA 72 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=36305 # 1qsgA.226.86 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)M229 (1qsgA)G87 because S (epsilon) conformation "forbidden" or filtered. T0547 226 :QFT 1qsgA 84 :KFD T0547 230 :IHFHL 1qsgA 88 :FVHSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36307 # 1t71A.226.150 read from T0547.t2k.many.frag # found chain 1t71A in template set T0547 226 :QFTMIHFHL 1t71A 151 :DLHIVDFHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36308 # 1us0A.226.103 read from T0547.t2k.many.frag # found chain 1us0A in training set Warning: unaligning (T0547)Q226 (1us0A)Y103 because Y (epsilon') conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1us0A 104 :LDLYLIHW Number of specific fragments extracted= 1 number of extra gaps= 1 total=36309 # 1u8xX.226.101 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)Q226 (1u8xX)D79 because L (left) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1u8xX 80 :VDFVMAHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=36310 # 1ne9A.226.100 read from T0547.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)M229 (1ne9A)V104 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 (1ne9A)D108 because D (zeta) conformation "forbidden" or filtered. T0547 226 :QFT 1ne9A 101 :RAY T0547 230 :IHF 1ne9A 105 :LRF T0547 234 :L 1ne9A 109 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=36313 # 1jqnA.226.573 read from T0547.t2k.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)L234 (1jqnA)G582 because S (epsilon) conformation "forbidden" or filtered. T0547 226 :QFTMIHFH 1jqnA 574 :ELTLFHGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=36314 # 1vliA.226.218 read from T0547.t2k.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)M229 (1vliA)G210 because Y (epsilon') conformation "forbidden" or filtered. T0547 226 :QFT 1vliA 207 :AVI T0547 230 :IHFHL 1vliA 211 :FSDHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36316 # 1uuyA.226.70 read from T0547.t2k.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)Q226 (1uuyA)E71 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. T0547 227 :FTMIHFH 1uuyA 72 :MDLILTL Number of specific fragments extracted= 1 number of extra gaps= 2 total=36317 1y42X expands to /projects/compbio/data/pdb/1y42.pdb.gz 1y42X:# 1y42X.226.95 read from T0547.t2k.many.frag # adding 1y42X to template set # found chain 1y42X in template set T0547 226 :QFTMIHFHL 1y42X 127 :GYKAFTLIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36318 # 7odcA.227.190 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G235 (7odcA)G199 because S (epsilon) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 7odcA 191 :VIGVSFHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=36319 # 1knwA.227.184 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 227 :FTMIHFHLG 1knwA 185 :LVGIHMHIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36320 # 1gudA.227.59 read from T0547.t2k.many.frag # found chain 1gudA in training set T0547 227 :FTMIHFHLG 1gudA 60 :YKGIAFAPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36321 # 2apjA.227.192 read from T0547.t2k.many.frag # found chain 2apjA in training set T0547 227 :FTMIHFHLG 2apjA 193 :LPIIQVAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36322 # 2axoA.227.72 read from T0547.t2k.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)H233 (2axoA)H79 because P (beta_P) conformation "forbidden" or filtered. T0547 227 :FTMIHF 2axoA 73 :VVGLSY T0547 234 :LG 2axoA 80 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=36324 # 7a3hA.227.94 read from T0547.t2k.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 T0547 227 :FTMIH 7a3hA 95 :YVIID T0547 234 :LG 7a3hA 102 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36326 # 1t7lA.227.304 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 227 :FTMIHFHLG 1t7lA 273 :KKLVAGVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36327 # 1onwA.227.157 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)I230 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1onwA)C163 Warning: unaligning (T0547)F232 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1onwA)C163 T0547 227 :FTM 1onwA 158 :VIG T0547 233 :HLG 1onwA 164 :AIS Number of specific fragments extracted= 2 number of extra gaps= 0 total=36329 # 1nmoA.227.164 read from T0547.t2k.many.frag # found chain 1nmoA in template set T0547 227 :FTMIHFHLG 1nmoA 165 :VQRVAWCTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36330 # 1ynpA.227.132 read from T0547.t2k.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)G235 (1ynpA)G121 because P (beta_P) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1ynpA 113 :IDLYQLHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=36331 # 1su8A.227.436 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)M229 (1su8A)G439 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1su8A)A444 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 T0547 227 :FT 1su8A 437 :IR T0547 230 :IHFH 1su8A 440 :VCLF Number of specific fragments extracted= 2 number of extra gaps= 2 total=36333 # 1xtpA.227.158 read from T0547.t2k.many.frag # found chain 1xtpA in template set T0547 227 :FTMIHFHLG 1xtpA 159 :YDLIVIQWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36334 # 1xg4A.227.151 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 227 :FTMIHFHLG 1xg4A 153 :FVIMARTDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36335 # 1jqnA.227.574 read from T0547.t2k.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)L234 (1jqnA)G582 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1jqnA)G583 because S (epsilon) conformation "forbidden" or filtered. T0547 227 :FTMIHFH 1jqnA 575 :LTLFHGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=36336 # 1kjnA.227.78 read from T0547.t2k.many.frag # found chain 1kjnA in template set T0547 227 :FTMIHFHLG 1kjnA 79 :YEFLAGFVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36337 # 1i4wA.227.59 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)H231 (1i4wA)D52 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 (1i4wA)Y54 because L (left) conformation "forbidden" or filtered. T0547 227 :FTMI 1i4wA 48 :LKVL T0547 232 :F 1i4wA 53 :L T0547 234 :LG 1i4wA 55 :PG Number of specific fragments extracted= 3 number of extra gaps= 2 total=36340 # 2bduA.227.43 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 227 :FTMIHFHLG 2bduA 44 :LQIITDFDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36341 # 1ox0A.227.315 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)L234 (1ox0A)G304 because L (left) conformation "forbidden" or filtered. T0547 227 :FTMIHFH 1ox0A 297 :VAYVNAH T0547 235 :G 1ox0A 305 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=36343 # 1t71A.227.151 read from T0547.t2k.many.frag # found chain 1t71A in template set T0547 227 :FTMIHFHLG 1t71A 152 :LHIVDFHAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36344 # 1u8xX.227.102 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)G235 (1u8xX)R88 because D (zeta) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1u8xX 80 :VDFVMAHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=36345 # 1qsgA.227.87 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 227 :FTMIHFHLG 1qsgA 85 :FDGFVHSIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36346 # 1qj4A.227.96 read from T0547.t2k.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)M229 (1qj4A)A99 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1qj4A)N104 because L (left) conformation "forbidden" or filtered. T0547 227 :FT 1qj4A 97 :IA T0547 230 :IHFH 1qj4A 100 :AVFH T0547 235 :G 1qj4A 105 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=36349 # 1x3mA.227.92 read from T0547.t2k.many.frag # found chain 1x3mA in template set T0547 227 :FTMIHFHLG 1x3mA 80 :VALIGHRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36350 # 1qyrA.227.116 read from T0547.t2k.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)M229 (1qyrA)D135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H231 (1qyrA)H137 because D (zeta) conformation "forbidden" or filtered. T0547 227 :FT 1qyrA 133 :IA T0547 230 :I 1qyrA 136 :M T0547 232 :FHLG 1qyrA 138 :FMLQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=36353 # 1g60A.227.213 read from T0547.t2k.many.frag # found chain 1g60A in template set Warning: unaligning (T0547)H233 (1g60A)F220 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1g60A)G222 because S (epsilon) conformation "forbidden" or filtered. T0547 227 :FTMIHF 1g60A 214 :DLVLDC T0547 234 :L 1g60A 221 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=36355 # 1rljA.227.73 read from T0547.t2k.many.frag # found chain 1rljA in template set Warning: unaligning (T0547)M229 (1rljA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1rljA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0547 227 :FT 1rljA 65 :LL T0547 230 :IHFH 1rljA 68 :VAAS T0547 235 :G 1rljA 73 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=36358 # 1uuyA.227.71 read from T0547.t2k.many.frag # found chain 1uuyA in training set T0547 227 :FTMIHFHLG 1uuyA 72 :MDLILTLGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36359 # 1us0A.227.104 read from T0547.t2k.many.frag # found chain 1us0A in training set Warning: unaligning (T0547)H233 (1us0A)H110 because H (helix) conformation "forbidden" or filtered. T0547 227 :FTMIHF 1us0A 104 :LDLYLI T0547 234 :LG 1us0A 111 :WP Number of specific fragments extracted= 2 number of extra gaps= 1 total=36361 # 1ne9A.227.101 read from T0547.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)G235 (1ne9A)E110 because N (gamma') conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1ne9A 102 :AYVLRFDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=36362 # 1wehA.227.0 read from T0547.t2k.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)F227 because first residue in template chain is (1wehA)M1 T0547 228 :TMIHFHLG 1wehA 2 :RLLAVFVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36363 # 7odcA.228.191 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)M229 (7odcA)G193 because Y (epsilon') conformation "forbidden" or filtered. T0547 228 :T 7odcA 192 :I T0547 230 :IHFHLGS 7odcA 194 :VSFHVGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36365 # 1knwA.228.185 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)M229 (1knwA)G187 because Y (epsilon') conformation "forbidden" or filtered. T0547 228 :T 1knwA 186 :V T0547 230 :IHFHLGS 1knwA 188 :IHMHIGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36367 # 7a3hA.228.95 read from T0547.t2k.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 T0547 228 :TMIH 7a3hA 96 :VIID T0547 234 :LGS 7a3hA 102 :ILS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36369 # 1gudA.228.60 read from T0547.t2k.many.frag # found chain 1gudA in training set T0547 228 :TMIHFHLGS 1gudA 61 :KGIAFAPLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36370 # 2apjA.228.193 read from T0547.t2k.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)G235 (2apjA)A201 because G (3-10) conformation "forbidden" or filtered. T0547 228 :TMIHFHL 2apjA 194 :PIIQVAI T0547 236 :S 2apjA 202 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=36372 # 2axoA.228.73 read from T0547.t2k.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)H233 (2axoA)H79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (2axoA)D81 because G (3-10) conformation "forbidden" or filtered. T0547 228 :TMIHF 2axoA 74 :VGLSY T0547 234 :L 2axoA 80 :V T0547 236 :S 2axoA 82 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=36375 # 1su8A.228.437 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)M229 (1su8A)G439 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1su8A)A444 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)C446 T0547 228 :T 1su8A 438 :R T0547 230 :IHFH 1su8A 440 :VCLF Number of specific fragments extracted= 2 number of extra gaps= 2 total=36377 # 1ynpA.228.133 read from T0547.t2k.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)L234 (1ynpA)G120 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1ynpA)G121 because P (beta_P) conformation "forbidden" or filtered. T0547 228 :TMIHFH 1ynpA 114 :DLYQLH T0547 236 :S 1ynpA 122 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=36379 # 1nmoA.228.165 read from T0547.t2k.many.frag # found chain 1nmoA in template set T0547 228 :TMIHFHLGS 1nmoA 166 :QRVAWCTGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36380 # 1wehA.228.1 read from T0547.t2k.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)L234 (1wehA)V8 because Y (epsilon') conformation "forbidden" or filtered. T0547 228 :TMIHFH 1wehA 2 :RLLAVF T0547 235 :GS 1wehA 9 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36382 # 1g60A.228.214 read from T0547.t2k.many.frag # found chain 1g60A in template set T0547 228 :TMIHFHLGS 1g60A 215 :LVLDCFMGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36383 # 1xtpA.228.159 read from T0547.t2k.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)G235 (1xtpA)T167 because G (3-10) conformation "forbidden" or filtered. T0547 228 :TMIHFHL 1xtpA 160 :DLIVIQW T0547 236 :S 1xtpA 168 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=36385 # 1xg4A.228.152 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 228 :TMIHFHLGS 1xg4A 154 :VIMARTDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36386 # 1i4wA.228.60 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)H233 (1i4wA)Y54 because L (left) conformation "forbidden" or filtered. T0547 228 :TMIHF 1i4wA 49 :KVLDL T0547 234 :LGS 1i4wA 55 :PGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36388 # 1uuyA.228.72 read from T0547.t2k.many.frag # found chain 1uuyA in training set T0547 228 :TMIHFHLGS 1uuyA 73 :DLILTLGGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36389 # 1ox0A.228.316 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)H233 (1ox0A)H303 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1ox0A)G304 because L (left) conformation "forbidden" or filtered. T0547 228 :TMIHF 1ox0A 298 :AYVNA T0547 235 :GS 1ox0A 305 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36391 # 1t7lA.228.305 read from T0547.t2k.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)G235 (1t7lA)N281 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1t7lA)G282 because G (3-10) conformation "forbidden" or filtered. T0547 228 :TMIHFHL 1t7lA 274 :KLVAGVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=36392 # 1t71A.228.152 read from T0547.t2k.many.frag # found chain 1t71A in template set Warning: unaligning (T0547)H231 (1t71A)D156 because D (zeta) conformation "forbidden" or filtered. T0547 228 :TMI 1t71A 153 :HIV T0547 232 :FHLGS 1t71A 157 :FHAET Number of specific fragments extracted= 2 number of extra gaps= 1 total=36394 # 1kjnA.228.79 read from T0547.t2k.many.frag # found chain 1kjnA in template set Warning: unaligning (T0547)G235 (1kjnA)P87 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1kjnA)N88 because Y (epsilon') conformation "forbidden" or filtered. T0547 228 :TMIHFHL 1kjnA 80 :EFLAGFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=36395 # 1u8xX.228.103 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)G235 (1u8xX)R88 because D (zeta) conformation "forbidden" or filtered. T0547 228 :TMIHFHL 1u8xX 81 :DFVMAHI T0547 236 :S 1u8xX 89 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=36397 # 1jqnA.228.575 read from T0547.t2k.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)L234 (1jqnA)G582 because S (epsilon) conformation "forbidden" or filtered. T0547 228 :TMIHFH 1jqnA 576 :TLFHGR T0547 235 :GS 1jqnA 583 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36399 # 1y42X.228.97 read from T0547.t2k.many.frag # found chain 1y42X in template set T0547 228 :TMIHFHLGS 1y42X 129 :KAFTLIGGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36400 # 1us0A.228.105 read from T0547.t2k.many.frag # found chain 1us0A in training set T0547 228 :TMIHFHLGS 1us0A 105 :DLYLIHWPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36401 # 1qj4A.228.97 read from T0547.t2k.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)L234 (1qj4A)N104 because L (left) conformation "forbidden" or filtered. T0547 228 :TMIHFH 1qj4A 98 :AAAVFH T0547 235 :GS 1qj4A 105 :SV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36403 # 2a84A.228.61 read from T0547.t2k.many.frag # found chain 2a84A in training set T0547 228 :TMIHFHLGS 2a84A 62 :VVVSIFVNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36404 # 1wbhA.228.130 read from T0547.t2k.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)F232 (1wbhA)F134 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1wbhA)P136 because C (cis) conformation "forbidden" or filtered. T0547 228 :TMIH 1wbhA 130 :KEFK T0547 233 :H 1wbhA 135 :F T0547 235 :GS 1wbhA 137 :AE Number of specific fragments extracted= 3 number of extra gaps= 2 total=36407 # 1onwA.228.158 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)M229 (1onwA)G160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I230 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1onwA)C163 Warning: unaligning (T0547)F232 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1onwA)C163 T0547 228 :T 1onwA 159 :I T0547 233 :HLGS 1onwA 164 :AISD Number of specific fragments extracted= 2 number of extra gaps= 1 total=36409 1bykA expands to /projects/compbio/data/pdb/1byk.pdb.gz 1bykA:# 1bykA.228.59 read from T0547.t2k.many.frag # adding 1bykA to template set # found chain 1bykA in template set Warning: unaligning (T0547)M229 (1bykA)G121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1bykA)F127 because Y (epsilon') conformation "forbidden" or filtered. T0547 228 :T 1bykA 120 :D T0547 230 :IHFHL 1bykA 122 :VVLFG T0547 236 :S 1bykA 128 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=36412 # 1t13A.228.73 read from T0547.t2k.many.frag # found chain 1t13A in template set T0547 228 :TMIHFHLGS 1t13A 76 :VGAAFVIDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36413 # 1vflA.228.147 read from T0547.t2k.many.frag # found chain 1vflA in training set T0547 228 :TMIHFHLGS 1vflA 146 :RSILCCMRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36414 # 7odcA.229.192 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)M229 (7odcA)G193 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 (7odcA)H197 because D (zeta) conformation "forbidden" or filtered. T0547 230 :IHF 7odcA 194 :VSF T0547 234 :LGSQ 7odcA 198 :VGSG Number of specific fragments extracted= 2 number of extra gaps= 2 total=36416 # 1knwA.229.186 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)M229 (1knwA)G187 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1knwA)G193 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1knwA)G195 because S (epsilon) conformation "forbidden" or filtered. T0547 230 :IHFHL 1knwA 188 :IHMHI T0547 236 :S 1knwA 194 :S Number of specific fragments extracted= 2 number of extra gaps= 3 total=36418 # 7a3hA.229.96 read from T0547.t2k.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)N106 T0547 229 :MIH 7a3hA 97 :IID T0547 234 :LGS 7a3hA 102 :ILS Number of specific fragments extracted= 2 number of extra gaps= 2 total=36420 # 1ynpA.229.134 read from T0547.t2k.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)H233 (1ynpA)H119 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1ynpA)G120 because T (delta_L) conformation "forbidden" or filtered. T0547 229 :MIHF 1ynpA 115 :LYQL T0547 235 :GSQ 1ynpA 121 :GTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36422 # 2apjA.229.194 read from T0547.t2k.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)G235 (2apjA)A201 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (2apjA)G203 because T (delta_L) conformation "forbidden" or filtered. T0547 229 :MIHFHL 2apjA 195 :IIQVAI T0547 236 :S 2apjA 202 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=36424 # 1gudA.229.61 read from T0547.t2k.many.frag # found chain 1gudA in training set T0547 229 :MIHFHLGSQ 1gudA 62 :GIAFAPLSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36425 # 2axoA.229.74 read from T0547.t2k.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)H233 (2axoA)H79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (2axoA)D81 because G (3-10) conformation "forbidden" or filtered. T0547 229 :MIHF 2axoA 75 :GLSY T0547 234 :L 2axoA 80 :V T0547 236 :SQ 2axoA 82 :YW Number of specific fragments extracted= 3 number of extra gaps= 2 total=36428 # 1su8A.229.438 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)M229 (1su8A)G439 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1su8A)A444 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)C446 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)N447 T0547 230 :IHFH 1su8A 440 :VCLF Number of specific fragments extracted= 1 number of extra gaps= 2 total=36429 # 1wehA.229.2 read from T0547.t2k.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)G235 (1wehA)S9 because P (beta_P) conformation "forbidden" or filtered. T0547 229 :MIHFHL 1wehA 3 :LLAVFV T0547 236 :SQ 1wehA 10 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=36431 # 1nmoA.229.166 read from T0547.t2k.many.frag # found chain 1nmoA in template set T0547 229 :MIHFHLGSQ 1nmoA 167 :RVAWCTGGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36432 # 1xtpA.229.160 read from T0547.t2k.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)L234 (1xtpA)W166 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1xtpA)T167 because G (3-10) conformation "forbidden" or filtered. T0547 229 :MIHFH 1xtpA 161 :LIVIQ T0547 236 :SQ 1xtpA 168 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36434 # 1wbhA.229.131 read from T0547.t2k.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)L234 (1wbhA)P136 because C (cis) conformation "forbidden" or filtered. T0547 229 :MIHFH 1wbhA 131 :EFKFF T0547 235 :GSQ 1wbhA 137 :AEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=36436 # 1uuyA.229.73 read from T0547.t2k.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)L234 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. T0547 229 :MIHFH 1uuyA 74 :LILTL T0547 235 :GSQ 1uuyA 80 :GTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=36438 # 1y42X.229.98 read from T0547.t2k.many.frag # found chain 1y42X in template set T0547 229 :MIHFHLGSQ 1y42X 130 :AFTLIGGST Number of specific fragments extracted= 1 number of extra gaps= 0 total=36439 # 1o97D.229.35 read from T0547.t2k.many.frag # found chain 1o97D in training set T0547 229 :MIHFHLGSQ 1o97D 36 :VVVAVIGSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36440 # 1us0A.229.106 read from T0547.t2k.many.frag # found chain 1us0A in training set Warning: unaligning (T0547)S236 (1us0A)T113 because P (beta_P) conformation "forbidden" or filtered. T0547 229 :MIHFHLG 1us0A 106 :LYLIHWP T0547 237 :Q 1us0A 114 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=36442 # 1u8xX.229.104 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)G235 (1u8xX)R88 because D (zeta) conformation "forbidden" or filtered. T0547 229 :MIHFHL 1u8xX 82 :FVMAHI T0547 236 :SQ 1u8xX 89 :VG Number of specific fragments extracted= 2 number of extra gaps= 1 total=36444 # 1srqA.229.120 read from T0547.t2k.many.frag # found chain 1srqA in template set T0547 229 :MIHFHLGSQ 1srqA 195 :FGVIYQKLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36445 # 1ox0A.229.317 read from T0547.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)S236 (1ox0A)S306 because L (left) conformation "forbidden" or filtered. T0547 229 :MIHFHLG 1ox0A 299 :YVNAHGT T0547 237 :Q 1ox0A 307 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=36447 # 1bykA.229.60 read from T0547.t2k.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)M229 (1bykA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0547 230 :IHFHLGSQ 1bykA 122 :VVLFGFTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=36448 # 1xg4A.229.153 read from T0547.t2k.many.frag # found chain 1xg4A in training set T0547 229 :MIHFHLGSQ 1xg4A 155 :IMARTDALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36449 # 1g60A.229.215 read from T0547.t2k.many.frag # found chain 1g60A in template set T0547 229 :MIHFHLGSQ 1g60A 216 :VLDCFMGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36450 # 1qj4A.229.98 read from T0547.t2k.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)M229 (1qj4A)A99 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1qj4A)N104 because L (left) conformation "forbidden" or filtered. T0547 230 :IHFH 1qj4A 100 :AVFH T0547 235 :GSQ 1qj4A 105 :SVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=36452 # 1t71A.229.153 read from T0547.t2k.many.frag # found chain 1t71A in template set T0547 229 :MIHFHLGSQ 1t71A 154 :IVDFHAETT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36453 # 1i0dA.229.163 read from T0547.t2k.many.frag # found chain 1i0dA in template set Warning: unaligning (T0547)G235 (1i0dA)A203 because N (gamma') conformation "forbidden" or filtered. T0547 229 :MIHFHL 1i0dA 197 :PVTTHT T0547 236 :SQ 1i0dA 204 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36455 # 1t13A.229.74 read from T0547.t2k.many.frag # found chain 1t13A in template set Warning: unaligning (T0547)G235 (1t13A)D83 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1t13A)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 229 :MIHFHL 1t13A 77 :GAAFVI T0547 236 :S 1t13A 84 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=36457 # 1i4wA.229.61 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)H231 (1i4wA)D52 because D (zeta) conformation "forbidden" or filtered. T0547 229 :MI 1i4wA 50 :VL T0547 232 :FHLGSQ 1i4wA 53 :LYPGVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=36459 # 1v58A.229.129 read from T0547.t2k.many.frag # found chain 1v58A in training set Warning: unaligning (T0547)M229 (1v58A)L130 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 (1v58A)L134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1v58A)G136 because D (zeta) conformation "forbidden" or filtered. T0547 230 :IHF 1v58A 131 :RTL T0547 234 :L 1v58A 135 :V T0547 236 :SQ 1v58A 137 :VI Number of specific fragments extracted= 3 number of extra gaps= 3 total=36462 # 1vflA.229.148 read from T0547.t2k.many.frag # found chain 1vflA in training set T0547 229 :MIHFHLGSQ 1vflA 147 :SILCCMRHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36463 # 2a84A.229.62 read from T0547.t2k.many.frag # found chain 2a84A in training set T0547 229 :MIHFHLGSQ 2a84A 63 :VVSIFVNPM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36464 # 7odcA.230.193 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 230 :IHFHLGSQI 7odcA 194 :VSFHVGSGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=36465 # 1knwA.230.187 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)H231 (1knwA)H189 because E (beta_S) conformation "forbidden" or filtered. T0547 230 :I 1knwA 188 :I T0547 232 :FHLGSQI 1knwA 190 :MHIGSGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36467 # 7a3hA.230.97 read from T0547.t2k.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)N106 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)N106 T0547 230 :IH 7a3hA 98 :ID T0547 234 :LGS 7a3hA 102 :ILS Number of specific fragments extracted= 2 number of extra gaps= 2 total=36469 # 2apjA.230.195 read from T0547.t2k.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)S236 (2apjA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (2apjA)G203 because T (delta_L) conformation "forbidden" or filtered. T0547 230 :IHFHLG 2apjA 196 :IQVAIA T0547 238 :I 2apjA 204 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=36471 # 1wehA.230.3 read from T0547.t2k.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)L234 (1wehA)V8 because Y (epsilon') conformation "forbidden" or filtered. T0547 230 :IHFH 1wehA 4 :LAVF T0547 235 :GSQI 1wehA 9 :SSRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36473 # 1su8A.230.439 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)L234 (1su8A)A444 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)C446 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)N447 T0547 230 :IHFH 1su8A 440 :VCLF T0547 238 :I 1su8A 448 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=36475 # 1o97D.230.36 read from T0547.t2k.many.frag # found chain 1o97D in training set T0547 230 :IHFHLGSQI 1o97D 37 :VVAVIGSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36476 # 1uuyA.230.74 read from T0547.t2k.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)I238 (1uuyA)F83 because G (3-10) conformation "forbidden" or filtered. T0547 230 :IHFHLGSQ 1uuyA 75 :ILTLGGTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=36477 # 2axoA.230.75 read from T0547.t2k.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)G235 (2axoA)D81 because G (3-10) conformation "forbidden" or filtered. T0547 230 :IHFHL 2axoA 76 :LSYHV T0547 236 :SQI 2axoA 82 :YWN Number of specific fragments extracted= 2 number of extra gaps= 1 total=36479 # 1y42X.230.99 read from T0547.t2k.many.frag # found chain 1y42X in template set T0547 230 :IHFHLGSQI 1y42X 131 :FTLIGGSTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36480 # 1srqA.230.121 read from T0547.t2k.many.frag # found chain 1srqA in template set Warning: unaligning (T0547)G235 (1srqA)K201 because P (beta_P) conformation "forbidden" or filtered. T0547 230 :IHFHL 1srqA 196 :GVIYQ T0547 236 :SQI 1srqA 202 :LGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=36482 # 1wbhA.230.132 read from T0547.t2k.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)L234 (1wbhA)P136 because C (cis) conformation "forbidden" or filtered. T0547 230 :IHFH 1wbhA 132 :FKFF T0547 235 :GSQI 1wbhA 137 :AEAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=36484 # 1xtpA.230.161 read from T0547.t2k.many.frag # found chain 1xtpA in template set T0547 230 :IHFHLGSQI 1xtpA 162 :IVIQWTAIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36485 # 1ynpA.230.135 read from T0547.t2k.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)L234 (1ynpA)G120 because T (delta_L) conformation "forbidden" or filtered. T0547 230 :IHFH 1ynpA 116 :YQLH T0547 235 :GSQI 1ynpA 121 :GTID Number of specific fragments extracted= 2 number of extra gaps= 1 total=36487 # 1nmoA.230.167 read from T0547.t2k.many.frag # found chain 1nmoA in template set T0547 230 :IHFHLGSQI 1nmoA 168 :VAWCTGGGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36488 # 1uf3A.230.65 read from T0547.t2k.many.frag # found chain 1uf3A in template set T0547 230 :IHFHLGSQI 1uf3A 66 :TAYVPGPQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36489 # 1us0A.230.107 read from T0547.t2k.many.frag # found chain 1us0A in training set T0547 230 :IHFHLGSQI 1us0A 107 :YLIHWPTGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36490 # 1gudA.230.62 read from T0547.t2k.many.frag # found chain 1gudA in training set Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE in next template residue (1gudA)N72 T0547 230 :IHFHLGSQ 1gudA 63 :IAFAPLSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=36491 # 1i0dA.230.164 read from T0547.t2k.many.frag # found chain 1i0dA in template set Warning: unaligning (T0547)H233 (1i0dA)H201 because E (beta_S) conformation "forbidden" or filtered. T0547 230 :IHF 1i0dA 198 :VTT T0547 234 :LGSQI 1i0dA 202 :TAASQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=36493 # 1u8xX.230.105 read from T0547.t2k.many.frag # found chain 1u8xX in template set T0547 230 :IHFHLGSQI 1u8xX 83 :VMAHIRVGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36494 # 1bykA.230.61 read from T0547.t2k.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)G235 (1bykA)F127 because Y (epsilon') conformation "forbidden" or filtered. T0547 230 :IHFHL 1bykA 122 :VVLFG T0547 236 :SQI 1bykA 128 :TGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36496 # 1sr9A.230.248 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)A253 Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)A253 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)V255 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)V255 T0547 230 :IHF 1sr9A 249 :FNL T0547 237 :QI 1sr9A 256 :EM Number of specific fragments extracted= 2 number of extra gaps= 1 total=36498 # 2d81A.230.92 read from T0547.t2k.many.frag # found chain 2d81A in training set Warning: unaligning (T0547)G235 (2d81A)G118 because P (beta_P) conformation "forbidden" or filtered. T0547 230 :IHFHL 2d81A 113 :IYMWT T0547 236 :SQI 2d81A 119 :SSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=36500 # 1v58A.230.130 read from T0547.t2k.many.frag # found chain 1v58A in training set T0547 230 :IHFHLGSQI 1v58A 131 :RTLLVGVIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36501 # 1vflA.230.149 read from T0547.t2k.many.frag # found chain 1vflA in training set Warning: unaligning (T0547)Q237 (1vflA)Q155 because D (zeta) conformation "forbidden" or filtered. T0547 230 :IHFHLGS 1vflA 148 :ILCCMRH T0547 238 :I 1vflA 156 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=36503 # 2nlrA.230.160 read from T0547.t2k.many.frag # found chain 2nlrA in training set T0547 230 :IHFHLGSQI 2nlrA 161 :LSFVAPSAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36504 # 1qtwA.230.105 read from T0547.t2k.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE in next template residue (1qtwA)M115 T0547 230 :IHFHLGSQ 1qtwA 106 :LNFHPGSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=36505 # 1rkxA.230.82 read from T0547.t2k.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)G235 (1rkxA)A88 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1rkxA)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 230 :IHFHL 1rkxA 83 :IVFHM T0547 237 :QI 1rkxA 90 :QP Number of specific fragments extracted= 2 number of extra gaps= 1 total=36507 # 1cl8A.230.164 read from T0547.t2k.many.frag # found chain 1cl8A in training set T0547 230 :IHFHLGSQI 1cl8A 166 :VLFLEGSNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36508 # 1t13A.230.75 read from T0547.t2k.many.frag # found chain 1t13A in template set Warning: unaligning (T0547)H231 (1t13A)A79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1t13A)D83 because P (beta_P) conformation "forbidden" or filtered. T0547 230 :I 1t13A 78 :A T0547 232 :FHL 1t13A 80 :FVI T0547 236 :SQI 1t13A 84 :GGI Number of specific fragments extracted= 3 number of extra gaps= 2 total=36511 # 7odcA.231.194 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G235 (7odcA)G199 because S (epsilon) conformation "forbidden" or filtered. T0547 231 :HFHL 7odcA 195 :SFHV T0547 236 :SQIT 7odcA 200 :SGCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=36513 # 1knwA.231.188 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)H231 (1knwA)H189 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 (1knwA)H191 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1knwA)V196 because G (3-10) conformation "forbidden" or filtered. T0547 232 :F 1knwA 190 :M T0547 234 :LGSQ 1knwA 192 :IGSG T0547 239 :T 1knwA 197 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=36516 # 2apjA.231.196 read from T0547.t2k.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)I238 (2apjA)G204 because S (epsilon) conformation "forbidden" or filtered. T0547 231 :HFHLGSQ 2apjA 197 :QVAIASG T0547 239 :T 2apjA 205 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=36518 # 1o97D.231.37 read from T0547.t2k.many.frag # found chain 1o97D in training set T0547 231 :HFHLGSQIT 1o97D 38 :VAVIGSQAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36519 # 1uuyA.231.75 read from T0547.t2k.many.frag # found chain 1uuyA in training set T0547 231 :HFHLGSQIT 1uuyA 76 :LTLGGTGFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36520 # 1uf3A.231.66 read from T0547.t2k.many.frag # found chain 1uf3A in template set T0547 231 :HFHLGSQIT 1uf3A 67 :AYVPGPQDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36521 # 1wehA.231.4 read from T0547.t2k.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)L234 (1wehA)V8 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1wehA)S9 because P (beta_P) conformation "forbidden" or filtered. T0547 231 :HFH 1wehA 5 :AVF T0547 236 :SQIT 1wehA 10 :SRLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36523 # 7a3hA.231.98 read from T0547.t2k.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)N106 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)N106 T0547 231 :H 7a3hA 99 :D T0547 234 :LGS 7a3hA 102 :ILS T0547 239 :T 7a3hA 107 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=36526 # 1su8A.231.440 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)L234 (1su8A)A444 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)C446 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)N447 T0547 231 :HFH 1su8A 441 :CLF T0547 238 :IT 1su8A 448 :NV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36528 # 2d81A.231.93 read from T0547.t2k.many.frag # found chain 2d81A in training set Warning: unaligning (T0547)G235 (2d81A)G118 because P (beta_P) conformation "forbidden" or filtered. T0547 231 :HFHL 2d81A 114 :YMWT T0547 236 :SQIT 2d81A 119 :SSDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=36530 # 1i0dA.231.165 read from T0547.t2k.many.frag # found chain 1i0dA in template set Warning: unaligning (T0547)T239 (1i0dA)R207 because L (left) conformation "forbidden" or filtered. T0547 231 :HFHLGSQI 1i0dA 199 :TTHTAASQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=36531 # 1xtpA.231.162 read from T0547.t2k.many.frag # found chain 1xtpA in template set T0547 231 :HFHLGSQIT 1xtpA 163 :VIQWTAIYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36532 # 1srqA.231.122 read from T0547.t2k.many.frag # found chain 1srqA in template set Warning: unaligning (T0547)G235 (1srqA)K201 because P (beta_P) conformation "forbidden" or filtered. T0547 231 :HFHL 1srqA 197 :VIYQ T0547 236 :SQIT 1srqA 202 :LGQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=36534 # 1qtwA.231.106 read from T0547.t2k.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)H233 (1qtwA)H109 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE in next template residue (1qtwA)M115 Warning: unaligning (T0547)T239 because of BadResidue code BAD_PEPTIDE at template residue (1qtwA)M115 T0547 231 :HF 1qtwA 107 :NF T0547 234 :LGSQ 1qtwA 110 :PGSH Number of specific fragments extracted= 2 number of extra gaps= 2 total=36536 1iow expands to /projects/compbio/data/pdb/1iow.pdb.gz 1iow:Warning: there is no chain 1iow will retry with 1iowA # 1iow.231.5 read from T0547.t2k.many.frag # adding 1iow to template set # found chain 1iow in template set Warning: unaligning (T0547)S236 (1iow)G11 because S (epsilon) conformation "forbidden" or filtered. T0547 231 :HFHLG 1iow 6 :AVLLG T0547 237 :QIT 1iow 12 :TSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=36538 # 1nmoA.231.168 read from T0547.t2k.many.frag # found chain 1nmoA in template set Warning: unaligning (T0547)F232 (1nmoA)W170 because Y (epsilon') conformation "forbidden" or filtered. T0547 231 :H 1nmoA 169 :A T0547 233 :HLGSQIT 1nmoA 171 :CTGGGQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36540 # 1bykA.231.62 read from T0547.t2k.many.frag # found chain 1bykA in template set T0547 231 :HFHLGSQIT 1bykA 123 :VLFGFTGIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36541 1m8jA expands to /projects/compbio/data/pdb/1m8j.pdb.gz 1m8jA:# 1m8jA.231.33 read from T0547.t2k.many.frag # adding 1m8jA to template set # found chain 1m8jA in template set T0547 231 :HFHLGSQIT 1m8jA 34 :IICIGSAQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36542 # 1y42X.231.100 read from T0547.t2k.many.frag # found chain 1y42X in template set Warning: unaligning (T0547)G235 (1y42X)G136 because H (helix) conformation "forbidden" or filtered. T0547 231 :HFHL 1y42X 132 :TLIG T0547 236 :SQIT 1y42X 137 :STAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=36544 # 1pii.231.231 read from T0547.t2k.many.frag # found chain 1pii in template set Warning: unaligning (T0547)H231 (1pii)G232 because Y (epsilon') conformation "forbidden" or filtered. T0547 232 :FHLGSQIT 1pii 233 :FLIGSALM Number of specific fragments extracted= 1 number of extra gaps= 1 total=36545 # 1v58A.231.131 read from T0547.t2k.many.frag # found chain 1v58A in training set Warning: unaligning (T0547)H233 (1v58A)L134 because P (beta_P) conformation "forbidden" or filtered. T0547 231 :HF 1v58A 132 :TL T0547 234 :LGSQIT 1v58A 135 :VGVIKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=36547 # 1cl8A.231.165 read from T0547.t2k.many.frag # found chain 1cl8A in training set T0547 231 :HFHLGSQIT 1cl8A 167 :LFLEGSNFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36548 # 1mpxA.231.145 read from T0547.t2k.many.frag # found chain 1mpxA in template set Warning: unaligning (T0547)L234 (1mpxA)I171 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1mpxA)S174 because S (epsilon) conformation "forbidden" or filtered. T0547 231 :HFH 1mpxA 168 :VGM T0547 235 :GS 1mpxA 172 :GS T0547 238 :IT 1mpxA 175 :YE Number of specific fragments extracted= 3 number of extra gaps= 2 total=36551 1l8aA expands to /projects/compbio/data/pdb/1l8a.pdb.gz 1l8aA:# 1l8aA.231.290 read from T0547.t2k.many.frag # adding 1l8aA to template set # found chain 1l8aA in template set T0547 231 :HFHLGSQIT 1l8aA 291 :KVMWGSRWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36552 # 1sr9A.231.249 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)A253 Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)A253 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)V255 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)V255 T0547 231 :HF 1sr9A 250 :NL T0547 237 :QIT 1sr9A 256 :EMT Number of specific fragments extracted= 2 number of extra gaps= 1 total=36554 # 1u8xX.231.106 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)H233 (1u8xX)H86 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1u8xX)R88 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1u8xX)G90 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1u8xX)K91 because S (epsilon) conformation "forbidden" or filtered. T0547 231 :HF 1u8xX 84 :MA T0547 234 :L 1u8xX 87 :I T0547 236 :S 1u8xX 89 :V T0547 239 :T 1u8xX 92 :Y Number of specific fragments extracted= 4 number of extra gaps= 3 total=36558 # 1oboA.231.4 read from T0547.t2k.many.frag # found chain 1oboA in training set Warning: unaligning (T0547)G235 (1oboA)G1009 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1oboA)T1010 because Y (epsilon') conformation "forbidden" or filtered. T0547 231 :HFHL 1oboA 1005 :GLFY T0547 237 :QIT 1oboA 1011 :QTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=36560 # 1gudA.231.63 read from T0547.t2k.many.frag # found chain 1gudA in training set Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE in next template residue (1gudA)N72 Warning: unaligning (T0547)T239 because of BadResidue code BAD_PEPTIDE at template residue (1gudA)N72 T0547 231 :HFHLGSQ 1gudA 64 :AFAPLSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=36561 # 1cliA.231.105 read from T0547.t2k.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)S236 (1cliA)T111 because Y (epsilon') conformation "forbidden" or filtered. T0547 231 :HFHLG 1cliA 106 :LDYYA T0547 237 :QIT 1cliA 112 :GKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36563 # 1vflA.231.150 read from T0547.t2k.many.frag # found chain 1vflA in training set T0547 231 :HFHLGSQIT 1vflA 149 :LCCMRHQPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36564 # 7odcA.232.195 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 232 :FHLGSQITE 7odcA 196 :FHVGSGCTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36565 # 2apjA.232.197 read from T0547.t2k.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)G235 (2apjA)A201 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (2apjA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (2apjA)G203 because T (delta_L) conformation "forbidden" or filtered. T0547 232 :FHL 2apjA 198 :VAI T0547 238 :ITE 2apjA 204 :GGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=36567 # 1uuyA.232.76 read from T0547.t2k.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)L234 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1uuyA)F83 because G (3-10) conformation "forbidden" or filtered. T0547 232 :FH 1uuyA 77 :TL T0547 235 :GSQ 1uuyA 80 :GTG T0547 239 :TE 1uuyA 84 :TP Number of specific fragments extracted= 3 number of extra gaps= 2 total=36570 # 1o97D.232.38 read from T0547.t2k.many.frag # found chain 1o97D in training set T0547 232 :FHLGSQITE 1o97D 39 :AVIGSQADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36571 # 1uf3A.232.67 read from T0547.t2k.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)G235 (1uf3A)G71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 232 :FHL 1uf3A 68 :YVP T0547 236 :SQIT 1uf3A 72 :PQDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=36573 # 1knwA.232.189 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q237 (1knwA)G195 because S (epsilon) conformation "forbidden" or filtered. T0547 232 :FHLGS 1knwA 190 :MHIGS T0547 238 :ITE 1knwA 196 :VDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=36575 # 1qtwA.232.107 read from T0547.t2k.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)H233 (1qtwA)H109 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE in next template residue (1qtwA)M115 Warning: unaligning (T0547)T239 because of BadResidue code BAD_PEPTIDE at template residue (1qtwA)M115 T0547 232 :F 1qtwA 108 :F T0547 234 :LGSQ 1qtwA 110 :PGSH T0547 240 :E 1qtwA 116 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=36578 # 1i0dA.232.166 read from T0547.t2k.many.frag # found chain 1i0dA in template set Warning: unaligning (T0547)G235 (1i0dA)A203 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)T239 (1i0dA)R207 because L (left) conformation "forbidden" or filtered. T0547 232 :FHL 1i0dA 200 :THT T0547 236 :SQI 1i0dA 204 :ASQ T0547 240 :E 1i0dA 208 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=36581 # 1sr9A.232.250 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)A253 Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)A253 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)V255 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)V255 Warning: unaligning (T0547)Q237 (1sr9A)E256 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1sr9A)M257 because G (3-10) conformation "forbidden" or filtered. T0547 232 :F 1sr9A 251 :L T0547 239 :TE 1sr9A 258 :TT Number of specific fragments extracted= 2 number of extra gaps= 1 total=36583 # 2d81A.232.94 read from T0547.t2k.many.frag # found chain 2d81A in training set Warning: unaligning (T0547)T239 (2d81A)T122 because G (3-10) conformation "forbidden" or filtered. T0547 232 :FHLGSQI 2d81A 115 :MWTGSSD T0547 240 :E 2d81A 123 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=36585 # 1xtpA.232.163 read from T0547.t2k.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)L234 (1xtpA)W166 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1xtpA)T167 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1xtpA)T172 because P (beta_P) conformation "forbidden" or filtered. T0547 232 :FH 1xtpA 164 :IQ T0547 236 :SQIT 1xtpA 168 :AIYL Number of specific fragments extracted= 2 number of extra gaps= 2 total=36587 # 1pii.232.232 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 232 :FHLGSQITE 1pii 233 :FLIGSALMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36588 # 1cliA.232.106 read from T0547.t2k.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)S236 (1cliA)T111 because Y (epsilon') conformation "forbidden" or filtered. T0547 232 :FHLG 1cliA 107 :DYYA T0547 237 :QITE 1cliA 112 :GKLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=36590 # 1iow.232.6 read from T0547.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0547)S236 (1iow)G11 because S (epsilon) conformation "forbidden" or filtered. T0547 232 :FHLG 1iow 7 :VLLG T0547 237 :QITE 1iow 12 :TSAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36592 # 1su8A.232.441 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)L234 (1su8A)A444 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)C446 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)N447 T0547 232 :FH 1su8A 442 :LF T0547 238 :ITE 1su8A 448 :NVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=36594 # 1wehA.232.5 read from T0547.t2k.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)L234 (1wehA)V8 because Y (epsilon') conformation "forbidden" or filtered. T0547 232 :FH 1wehA 6 :VF T0547 235 :GSQITE 1wehA 9 :SSRLSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=36596 # 1l1lA.232.353 read from T0547.t2k.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)L234 (1l1lA)V356 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1l1lA)D357 because Y (epsilon') conformation "forbidden" or filtered. T0547 232 :FH 1l1lA 354 :VA T0547 236 :SQITE 1l1lA 358 :SAFSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=36598 # 1nmoA.232.169 read from T0547.t2k.many.frag # found chain 1nmoA in template set T0547 232 :FHLGSQITE 1nmoA 170 :WCTGGGQSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36599 # 1v58A.232.132 read from T0547.t2k.many.frag # found chain 1v58A in training set T0547 232 :FHLGSQITE 1v58A 133 :LLVGVIKPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36600 # 1l8aA.232.291 read from T0547.t2k.many.frag # found chain 1l8aA in template set T0547 232 :FHLGSQITE 1l8aA 292 :VMWGSRWDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36601 # 1srqA.232.123 read from T0547.t2k.many.frag # found chain 1srqA in template set Warning: unaligning (T0547)T239 (1srqA)T205 because G (3-10) conformation "forbidden" or filtered. T0547 232 :FHLGSQI 1srqA 198 :IYQKLGQ T0547 240 :E 1srqA 206 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=36603 # 1bykA.232.63 read from T0547.t2k.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)Q237 (1bykA)G129 because T (delta_L) conformation "forbidden" or filtered. T0547 232 :FHLGS 1bykA 124 :LFGFT T0547 238 :ITE 1bykA 130 :ITE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36605 # 1cl8A.232.166 read from T0547.t2k.many.frag # found chain 1cl8A in training set T0547 232 :FHLGSQITE 1cl8A 168 :FLEGSNFLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36606 # 1t9hA.232.122 read from T0547.t2k.many.frag # found chain 1t9hA in training set T0547 232 :FHLGSQITE 1t9hA 114 :CITKMDLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36607 # 1ox0A.232.320 read from T0547.t2k.many.frag # found chain 1ox0A in training set T0547 232 :FHLGSQITE 1ox0A 302 :AHGTSTPAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36608 1k3rA expands to /projects/compbio/data/pdb/1k3r.pdb.gz 1k3rA:# 1k3rA.232.8 read from T0547.t2k.many.frag # adding 1k3rA to template set # found chain 1k3rA in template set Warning: unaligning (T0547)I238 (1k3rA)T15 because G (3-10) conformation "forbidden" or filtered. T0547 232 :FHLGSQ 1k3rA 9 :FIPDSL T0547 239 :TE 1k3rA 16 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36610 # 1na6A.232.67 read from T0547.t2k.many.frag # found chain 1na6A in template set T0547 232 :FHLGSQITE 1na6A 68 :AHVSSHDCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36611 # 1tqjA.232.197 read from T0547.t2k.many.frag # found chain 1tqjA in training set T0547 232 :FHLGSQITE 1tqjA 198 :IVAGSAVFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36612 # 1qlwA.232.249 read from T0547.t2k.many.frag # found chain 1qlwA in training set Warning: unaligning (T0547)G235 (1qlwA)G253 because P (beta_P) conformation "forbidden" or filtered. T0547 232 :FHL 1qlwA 250 :VVF T0547 236 :SQITE 1qlwA 254 :DHIEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36614 # 7a3hA.232.99 read from T0547.t2k.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)N106 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)N106 T0547 234 :LGS 7a3hA 102 :ILS T0547 239 :TE 7a3hA 107 :DP Number of specific fragments extracted= 2 number of extra gaps= 2 total=36616 # 7odcA.233.196 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 233 :HLGSQITEI 7odcA 197 :HVGSGCTDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36617 # 1uf3A.233.68 read from T0547.t2k.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)G235 (1uf3A)G71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 233 :HL 1uf3A 69 :VP T0547 236 :SQIT 1uf3A 72 :PQDA T0547 241 :I 1uf3A 77 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=36620 # 2apjA.233.198 read from T0547.t2k.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)S236 (2apjA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (2apjA)G203 because T (delta_L) conformation "forbidden" or filtered. T0547 233 :HLG 2apjA 199 :AIA T0547 238 :ITEI 2apjA 204 :GGYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36622 # 1uuyA.233.77 read from T0547.t2k.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)L234 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1uuyA)F83 because G (3-10) conformation "forbidden" or filtered. T0547 233 :H 1uuyA 78 :L T0547 235 :GSQ 1uuyA 80 :GTG T0547 239 :TEI 1uuyA 84 :TPR Number of specific fragments extracted= 3 number of extra gaps= 2 total=36625 # 1o97D.233.39 read from T0547.t2k.many.frag # found chain 1o97D in training set T0547 233 :HLGSQITEI 1o97D 40 :VIGSQADAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36626 # 1sr9A.233.251 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)A253 Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)A253 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)V255 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)V255 Warning: unaligning (T0547)I238 (1sr9A)M257 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1sr9A)T259 because P (beta_P) conformation "forbidden" or filtered. T0547 237 :Q 1sr9A 256 :E T0547 239 :T 1sr9A 258 :T T0547 241 :I 1sr9A 260 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=36629 # 1cliA.233.107 read from T0547.t2k.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)S236 (1cliA)T111 because Y (epsilon') conformation "forbidden" or filtered. T0547 233 :HLG 1cliA 108 :YYA T0547 237 :QITEI 1cliA 112 :GKLDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36631 # 1xtpA.233.164 read from T0547.t2k.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)L234 (1xtpA)W166 because L (left) conformation "forbidden" or filtered. T0547 233 :H 1xtpA 165 :Q T0547 235 :GSQITEI 1xtpA 167 :TAIYLTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=36633 # 2basA.233.176 read from T0547.t2k.many.frag # found chain 2basA in template set T0547 233 :HLGSQITEI 2basA 153 :NIGKESSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36634 # 1qtwA.233.108 read from T0547.t2k.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)G235 (1qtwA)G111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE in next template residue (1qtwA)M115 Warning: unaligning (T0547)T239 because of BadResidue code BAD_PEPTIDE at template residue (1qtwA)M115 T0547 233 :HL 1qtwA 109 :HP T0547 236 :SQ 1qtwA 112 :SH T0547 240 :EI 1qtwA 116 :QI Number of specific fragments extracted= 3 number of extra gaps= 2 total=36637 # 1lucA.233.189 read from T0547.t2k.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)G235 (1lucA)L192 because P (beta_P) conformation "forbidden" or filtered. T0547 233 :HL 1lucA 190 :MI T0547 236 :SQITEI 1lucA 193 :SWIINT Number of specific fragments extracted= 2 number of extra gaps= 1 total=36639 1jyoA expands to /projects/compbio/data/pdb/1jyo.pdb.gz 1jyoA:# 1jyoA.233.94 read from T0547.t2k.many.frag # adding 1jyoA to template set # found chain 1jyoA in template set Warning: unaligning (T0547)H233 (1jyoA)H95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1jyoA)T98 because G (3-10) conformation "forbidden" or filtered. T0547 234 :LG 1jyoA 96 :AI T0547 237 :QITEI 1jyoA 99 :DLTNT Number of specific fragments extracted= 2 number of extra gaps= 2 total=36641 # 1i0dA.233.167 read from T0547.t2k.many.frag # found chain 1i0dA in template set Warning: unaligning (T0547)G235 (1i0dA)A203 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)T239 (1i0dA)R207 because L (left) conformation "forbidden" or filtered. T0547 233 :HL 1i0dA 201 :HT T0547 236 :SQI 1i0dA 204 :ASQ T0547 240 :EI 1i0dA 208 :DG Number of specific fragments extracted= 3 number of extra gaps= 2 total=36644 # 1knwA.233.190 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)H233 (1knwA)H191 because D (zeta) conformation "forbidden" or filtered. T0547 234 :LGSQITEI 1knwA 192 :IGSGVDYA Number of specific fragments extracted= 1 number of extra gaps= 1 total=36645 # 1pii.233.233 read from T0547.t2k.many.frag # found chain 1pii in template set T0547 233 :HLGSQITEI 1pii 234 :LIGSALMAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36646 # 1l1lA.233.354 read from T0547.t2k.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)L234 (1l1lA)V356 because Y (epsilon') conformation "forbidden" or filtered. T0547 233 :H 1l1lA 355 :A T0547 235 :GSQITEI 1l1lA 357 :DSAFSGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=36648 # 1iow.233.7 read from T0547.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0547)G235 (1iow)G10 because S (epsilon) conformation "forbidden" or filtered. T0547 233 :HL 1iow 8 :LL T0547 236 :SQITEI 1iow 11 :GTSAER Number of specific fragments extracted= 2 number of extra gaps= 1 total=36650 # 1t9hA.233.123 read from T0547.t2k.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)I238 (1t9hA)L120 because G (3-10) conformation "forbidden" or filtered. T0547 233 :HLGSQ 1t9hA 115 :ITKMD T0547 239 :TEI 1t9hA 121 :IED Number of specific fragments extracted= 2 number of extra gaps= 1 total=36652 # 1tqjA.233.198 read from T0547.t2k.many.frag # found chain 1tqjA in training set T0547 233 :HLGSQITEI 1tqjA 199 :VAGSAVFNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36653 # 1wehA.233.6 read from T0547.t2k.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)L234 (1wehA)V8 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1wehA)S9 because P (beta_P) conformation "forbidden" or filtered. T0547 233 :H 1wehA 7 :F T0547 236 :SQITEI 1wehA 10 :SRLSPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36655 # 1srqA.233.124 read from T0547.t2k.many.frag # found chain 1srqA in template set Warning: unaligning (T0547)E240 (1srqA)S206 because E (beta_S) conformation "forbidden" or filtered. T0547 233 :HLGSQIT 1srqA 199 :YQKLGQT T0547 241 :I 1srqA 207 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=36657 # 2d81A.233.95 read from T0547.t2k.many.frag # found chain 2d81A in training set T0547 233 :HLGSQITEI 2d81A 116 :WTGSSDTTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36658 3thiA expands to /projects/compbio/data/pdb/3thi.pdb.gz 3thiA:# 3thiA.233.5 read from T0547.t2k.many.frag # adding 3thiA to template set # found chain 3thiA in template set Warning: unaligning (T0547)E240 (3thiA)D21 because D (zeta) conformation "forbidden" or filtered. T0547 233 :HLGSQIT 3thiA 14 :AIYPYVP T0547 241 :I 3thiA 22 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=36660 # 1h05A.233.74 read from T0547.t2k.many.frag # found chain 1h05A in training set T0547 233 :HLGSQITEI 1h05A 75 :NAGGLTHTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36661 1rqbA expands to /projects/compbio/data/pdb/1rqb.pdb.gz 1rqbA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: CX for alphabet: pdb_atoms Bad short name: OQ1 for alphabet: pdb_atoms Bad short name: OQ2 for alphabet: pdb_atoms Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1rqbA.233.194 read from T0547.t2k.many.frag # adding 1rqbA to template set # found chain 1rqbA in template set Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rqbA)D185 T0547 235 :GSQITEI 1rqbA 186 :MAALLKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36662 # 1nmoA.233.170 read from T0547.t2k.many.frag # found chain 1nmoA in template set Warning: unaligning (T0547)G235 (1nmoA)G173 because S (epsilon) conformation "forbidden" or filtered. T0547 233 :HL 1nmoA 171 :CT T0547 236 :SQITEI 1nmoA 174 :GGQSFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36664 # 1l8aA.233.292 read from T0547.t2k.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)G235 (1l8aA)G295 because P (beta_P) conformation "forbidden" or filtered. T0547 233 :HL 1l8aA 293 :MW T0547 236 :SQITEI 1l8aA 296 :SRWDEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36666 # 1es9A.233.136 read from T0547.t2k.many.frag # found chain 1es9A in training set Warning: unaligning (T0547)H233 (1es9A)G137 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1es9A)G142 because S (epsilon) conformation "forbidden" or filtered. T0547 234 :LGSQ 1es9A 138 :LLPR T0547 239 :TEI 1es9A 143 :QHP Number of specific fragments extracted= 2 number of extra gaps= 2 total=36668 # 2fokA.233.294 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)G235 (2fokA)A297 because Y (epsilon') conformation "forbidden" or filtered. T0547 233 :HL 2fokA 295 :ML T0547 236 :SQITEI 2fokA 298 :TNLTDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=36670 2nacA expands to /projects/compbio/data/pdb/2nac.pdb.gz 2nacA:# 2nacA.233.120 read from T0547.t2k.many.frag # adding 2nacA to template set # found chain 2nacA in template set T0547 233 :HLGSQITEI 2nacA 121 :GIGSDHVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36671 # 7odcA.234.197 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)T239 (7odcA)T203 because G (3-10) conformation "forbidden" or filtered. T0547 234 :LGSQI 7odcA 198 :VGSGC T0547 240 :EIH 7odcA 204 :DPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=36673 # 1cliA.234.108 read from T0547.t2k.many.frag # found chain 1cliA in template set T0547 234 :LGSQITEIH 1cliA 109 :YATGKLDVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36674 # 1uf3A.234.69 read from T0547.t2k.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 234 :LGSQIT 1uf3A 70 :PGPQDA T0547 241 :IH 1uf3A 77 :IW Number of specific fragments extracted= 2 number of extra gaps= 1 total=36676 # 1lucA.234.190 read from T0547.t2k.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)G235 (1lucA)L192 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1lucA)N197 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H242 (1lucA)H199 because H (helix) conformation "forbidden" or filtered. T0547 234 :L 1lucA 191 :I T0547 236 :SQIT 1lucA 193 :SWII T0547 241 :I 1lucA 198 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=36679 # 1jyoA.234.95 read from T0547.t2k.many.frag # found chain 1jyoA in template set Warning: unaligning (T0547)I238 (1jyoA)L100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1jyoA)N102 because E (beta_S) conformation "forbidden" or filtered. T0547 234 :LGSQ 1jyoA 96 :AITD T0547 239 :T 1jyoA 101 :T T0547 241 :IH 1jyoA 103 :TY Number of specific fragments extracted= 3 number of extra gaps= 2 total=36682 # 1sr9A.234.252 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)A253 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)V255 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)V255 Warning: unaligning (T0547)I238 (1sr9A)M257 because G (3-10) conformation "forbidden" or filtered. T0547 237 :Q 1sr9A 256 :E T0547 239 :TEIH 1sr9A 258 :TTPN Number of specific fragments extracted= 2 number of extra gaps= 2 total=36684 # 2apjA.234.199 read from T0547.t2k.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)G235 (2apjA)A201 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (2apjA)G203 because T (delta_L) conformation "forbidden" or filtered. T0547 234 :L 2apjA 200 :I T0547 236 :S 2apjA 202 :S T0547 238 :ITEIH 2apjA 204 :GGYID Number of specific fragments extracted= 3 number of extra gaps= 2 total=36687 # 2fokA.234.295 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)G235 (2fokA)A297 because Y (epsilon') conformation "forbidden" or filtered. T0547 234 :L 2fokA 296 :L T0547 236 :SQITEIH 2fokA 298 :TNLTDKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36689 # 1xtpA.234.165 read from T0547.t2k.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)L234 (1xtpA)W166 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1xtpA)T172 because P (beta_P) conformation "forbidden" or filtered. T0547 235 :GSQIT 1xtpA 167 :TAIYL T0547 241 :IH 1xtpA 173 :DA Number of specific fragments extracted= 2 number of extra gaps= 2 total=36691 # 1l1lA.234.355 read from T0547.t2k.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)L234 (1l1lA)V356 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1l1lA)D357 because Y (epsilon') conformation "forbidden" or filtered. T0547 236 :SQITEIH 1l1lA 358 :SAFSGYQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=36692 # 1j2rA.234.164 read from T0547.t2k.many.frag # found chain 1j2rA in training set Warning: unaligning (T0547)G235 (1j2rA)A166 because G (3-10) conformation "forbidden" or filtered. T0547 234 :L 1j2rA 165 :D T0547 236 :SQITEIH 1j2rA 167 :CSAASAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36694 # 1qf5A.234.146 read from T0547.t2k.many.frag # found chain 1qf5A in template set Warning: unaligning (T0547)E240 (1qf5A)D153 because D (zeta) conformation "forbidden" or filtered. T0547 234 :LGSQIT 1qf5A 147 :RVGDLF T0547 241 :IH 1qf5A 154 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36696 # 2basA.234.177 read from T0547.t2k.many.frag # found chain 2basA in template set T0547 234 :LGSQITEIH 2basA 154 :IGKESSNLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36697 # 1rqbA.234.195 read from T0547.t2k.many.frag # found chain 1rqbA in template set Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rqbA)D185 Warning: unaligning (T0547)S236 (1rqbA)A187 because G (3-10) conformation "forbidden" or filtered. T0547 235 :G 1rqbA 186 :M T0547 237 :QITEIH 1rqbA 188 :ALLKPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=36699 # 1uuyA.234.78 read from T0547.t2k.many.frag # found chain 1uuyA in training set T0547 234 :LGSQITEIH 1uuyA 79 :GGTGFTPRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36700 # 3thiA.234.6 read from T0547.t2k.many.frag # found chain 3thiA in template set T0547 234 :LGSQITEIH 3thiA 15 :IYPYVPDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36701 # 1t9hA.234.124 read from T0547.t2k.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)I238 (1t9hA)L120 because G (3-10) conformation "forbidden" or filtered. T0547 234 :LGSQ 1t9hA 116 :TKMD T0547 239 :TEIH 1t9hA 121 :IEDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=36703 # 2nacA.234.121 read from T0547.t2k.many.frag # found chain 2nacA in template set T0547 234 :LGSQITEIH 2nacA 122 :IGSDHVDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36704 # 1o97D.234.40 read from T0547.t2k.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)I241 (1o97D)F48 because G (3-10) conformation "forbidden" or filtered. T0547 234 :LGSQITE 1o97D 41 :IGSQADA T0547 242 :H 1o97D 49 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=36706 # 1yacA.234.137 read from T0547.t2k.many.frag # found chain 1yacA in training set T0547 234 :LGSQITEIH 1yacA 138 :DASGTFNEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36707 # 1tqjA.234.199 read from T0547.t2k.many.frag # found chain 1tqjA in training set T0547 234 :LGSQITEIH 1tqjA 200 :AGSAVFNAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36708 # 1f60A.234.154 read from T0547.t2k.many.frag # found chain 1f60A in training set T0547 234 :LGSQITEIH 1f60A 155 :MDSVKWDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=36709 # 1h05A.234.75 read from T0547.t2k.many.frag # found chain 1h05A in training set Warning: unaligning (T0547)G235 (1h05A)G77 because S (epsilon) conformation "forbidden" or filtered. T0547 234 :L 1h05A 76 :A T0547 236 :SQITEIH 1h05A 78 :GLTHTSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36711 # 1i0dA.234.168 read from T0547.t2k.many.frag # found chain 1i0dA in template set Warning: unaligning (T0547)G235 (1i0dA)A203 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)T239 (1i0dA)R207 because L (left) conformation "forbidden" or filtered. T0547 234 :L 1i0dA 202 :T T0547 236 :SQI 1i0dA 204 :ASQ T0547 240 :EIH 1i0dA 208 :DGE Number of specific fragments extracted= 3 number of extra gaps= 2 total=36714 1otjA expands to /projects/compbio/data/pdb/1otj.pdb.gz 1otjA:Skipped atom 505, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 507, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 509, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 511, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 513, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 515, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 517, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 519, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 521, because occupancy 0.500 <= existing 0.500 in 1otjA # 1otjA.234.46 read from T0547.t2k.many.frag # adding 1otjA to template set # found chain 1otjA in template set T0547 234 :LGSQITEIH 1otjA 47 :LRDQAITPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36715 # 1iow.234.8 read from T0547.t2k.many.frag # found chain 1iow in template set T0547 234 :LGSQITEIH 1iow 9 :LGGTSAERE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36716 # 1srqA.234.125 read from T0547.t2k.many.frag # found chain 1srqA in template set T0547 234 :LGSQITEIH 1srqA 200 :QKLGQTSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36717 # 1t13A.234.79 read from T0547.t2k.many.frag # found chain 1t13A in template set Warning: unaligning (T0547)E240 (1t13A)R88 because P (beta_P) conformation "forbidden" or filtered. T0547 234 :LGSQIT 1t13A 82 :IDGGIY T0547 241 :IH 1t13A 89 :HD Number of specific fragments extracted= 2 number of extra gaps= 1 total=36719 # 1p7tA.234.272 read from T0547.t2k.many.frag # found chain 1p7tA in template set Warning: unaligning (T0547)E240 (1p7tA)D279 because Y (epsilon') conformation "forbidden" or filtered. T0547 234 :LGSQIT 1p7tA 273 :DSVAAV T0547 241 :IH 1p7tA 280 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36721 # 2bogX.234.186 read from T0547.t2k.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (2bogX)Y191 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (2bogX)Y191 T0547 234 :LGS 2bogX 187 :NTS T0547 239 :TEIH 2bogX 192 :RWTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=36723 # 7odcA.235.198 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 235 :GSQITEIHP 7odcA 199 :GSGCTDPDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36724 # 1cliA.235.109 read from T0547.t2k.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)G235 (1cliA)A110 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1cliA)T111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1cliA)D115 because N (gamma') conformation "forbidden" or filtered. T0547 237 :QIT 1cliA 112 :GKL T0547 241 :IHP 1cliA 116 :VDT Number of specific fragments extracted= 2 number of extra gaps= 2 total=36726 # 1jyoA.235.96 read from T0547.t2k.many.frag # found chain 1jyoA in template set T0547 235 :GSQITEIHP 1jyoA 97 :ITDLTNTYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36727 # 1uf3A.235.70 read from T0547.t2k.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)Q237 (1uf3A)Q73 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 235 :GS 1uf3A 71 :GP T0547 238 :IT 1uf3A 74 :DA T0547 241 :IHP 1uf3A 77 :IWE Number of specific fragments extracted= 3 number of extra gaps= 2 total=36730 # 2fokA.235.296 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)G235 (2fokA)A297 because Y (epsilon') conformation "forbidden" or filtered. T0547 236 :SQITEIHP 2fokA 298 :TNLTDKEY Number of specific fragments extracted= 1 number of extra gaps= 1 total=36731 # 1lucA.235.191 read from T0547.t2k.many.frag # found chain 1lucA in training set T0547 235 :GSQITEIHP 1lucA 192 :LSWIINTHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36732 # 1qf5A.235.147 read from T0547.t2k.many.frag # found chain 1qf5A in template set T0547 235 :GSQITEIHP 1qf5A 148 :VGDLFDKET Number of specific fragments extracted= 1 number of extra gaps= 0 total=36733 # 1j2rA.235.165 read from T0547.t2k.many.frag # found chain 1j2rA in training set Warning: unaligning (T0547)G235 (1j2rA)A166 because G (3-10) conformation "forbidden" or filtered. T0547 236 :SQITEIHP 1j2rA 167 :CSAASAEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=36734 # 3thiA.235.7 read from T0547.t2k.many.frag # found chain 3thiA in template set T0547 235 :GSQITEIHP 3thiA 16 :YPYVPDPAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36735 # 1l1lA.235.356 read from T0547.t2k.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)G235 (1l1lA)D357 because Y (epsilon') conformation "forbidden" or filtered. T0547 236 :SQITEIHP 1l1lA 358 :SAFSGYQP Number of specific fragments extracted= 1 number of extra gaps= 1 total=36736 # 1xtpA.235.166 read from T0547.t2k.many.frag # found chain 1xtpA in template set T0547 235 :GSQITEIHP 1xtpA 167 :TAIYLTDAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36737 # 1sr9A.235.253 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)V255 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)V255 Warning: unaligning (T0547)I238 (1sr9A)M257 because G (3-10) conformation "forbidden" or filtered. T0547 237 :Q 1sr9A 256 :E T0547 239 :TEIHP 1sr9A 258 :TTPNV Number of specific fragments extracted= 2 number of extra gaps= 2 total=36739 # 2apjA.235.200 read from T0547.t2k.many.frag # found chain 2apjA in training set T0547 235 :GSQITEIHP 2apjA 201 :ASGGGYIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36740 # 1p7tA.235.273 read from T0547.t2k.many.frag # found chain 1p7tA in template set Warning: unaligning (T0547)G235 (1p7tA)S274 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1p7tA)D279 because Y (epsilon') conformation "forbidden" or filtered. T0547 236 :SQIT 1p7tA 275 :VAAV T0547 241 :IHP 1p7tA 280 :AED Number of specific fragments extracted= 2 number of extra gaps= 2 total=36742 # 1v33A.235.69 read from T0547.t2k.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)Q237 (1v33A)Q52 because E (beta_S) conformation "forbidden" or filtered. T0547 235 :GS 1v33A 50 :KN T0547 238 :ITEIHP 1v33A 53 :YTDIRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=36744 # 1rqbA.235.196 read from T0547.t2k.many.frag # found chain 1rqbA in template set Warning: unaligning (T0547)Q237 (1rqbA)A188 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1rqbA)K191 because P (beta_P) conformation "forbidden" or filtered. T0547 235 :GS 1rqbA 186 :MA T0547 238 :IT 1rqbA 189 :LL T0547 241 :IHP 1rqbA 192 :PQP Number of specific fragments extracted= 3 number of extra gaps= 2 total=36747 # 1t9hA.235.125 read from T0547.t2k.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)I238 (1t9hA)L120 because G (3-10) conformation "forbidden" or filtered. T0547 235 :GSQ 1t9hA 117 :KMD T0547 239 :TEIHP 1t9hA 121 :IEDQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=36749 1efdN expands to /projects/compbio/data/pdb/1efd.pdb.gz 1efdN:# 1efdN.235.73 read from T0547.t2k.many.frag # adding 1efdN to template set # found chain 1efdN in template set T0547 235 :GSQITEIHP 1efdN 104 :AGYGPSPEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36750 1jqlB expands to /projects/compbio/data/pdb/1jql.pdb.gz 1jqlB:# 1jqlB.235.54 read from T0547.t2k.many.frag # adding 1jqlB to template set # found chain 1jqlB in template set Warning: unaligning (T0547)G235 (1jqlB)I55 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1jqlB)D56 because Y (epsilon') conformation "forbidden" or filtered. T0547 237 :QITEIHP 1jqlB 57 :PNTDWNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=36751 # 2basA.235.178 read from T0547.t2k.many.frag # found chain 2basA in template set T0547 235 :GSQITEIHP 2basA 155 :GKESSNLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36752 # 1h05A.235.76 read from T0547.t2k.many.frag # found chain 1h05A in training set T0547 235 :GSQITEIHP 1h05A 77 :GGLTHTSVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36753 # 1ofcX.235.158 read from T0547.t2k.many.frag # found chain 1ofcX in template set T0547 235 :GSQITEIHP 1ofcX 846 :CTELQDIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=36754 # 2bogX.235.187 read from T0547.t2k.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)G235 (2bogX)T188 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (2bogX)S189 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (2bogX)Y191 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (2bogX)Y191 Warning: unaligning (T0547)E240 (2bogX)W193 because P (beta_P) conformation "forbidden" or filtered. T0547 239 :T 2bogX 192 :R T0547 241 :IHP 2bogX 194 :TAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=36756 # 1yacA.235.138 read from T0547.t2k.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)E240 (1yacA)N144 because Y (epsilon') conformation "forbidden" or filtered. T0547 235 :GSQIT 1yacA 139 :ASGTF T0547 241 :IHP 1yacA 145 :EIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=36758 # 2nacA.235.122 read from T0547.t2k.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)E240 (2nacA)D128 because N (gamma') conformation "forbidden" or filtered. T0547 235 :GSQIT 2nacA 123 :GSDHV T0547 241 :IHP 2nacA 129 :LQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36760 # 1f60A.235.155 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)I238 (1f60A)K159 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T239 (1f60A)W160 because L (left) conformation "forbidden" or filtered. T0547 235 :GSQ 1f60A 156 :DSV T0547 240 :EIHP 1f60A 161 :DESR Number of specific fragments extracted= 2 number of extra gaps= 1 total=36762 # 1tqjA.235.200 read from T0547.t2k.many.frag # found chain 1tqjA in training set Warning: unaligning (T0547)P243 (1tqjA)N209 because D (zeta) conformation "forbidden" or filtered. T0547 235 :GSQITEIH 1tqjA 201 :GSAVFNAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=36763 # 2cw6A.235.177 read from T0547.t2k.many.frag # found chain 2cw6A in template set T0547 235 :GSQITEIHP 2cw6A 205 :TIGVGTPGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36764 # 1t0hB.235.138 read from T0547.t2k.many.frag # found chain 1t0hB in template set Warning: unaligning (T0547)G235 (1t0hB)Y340 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1t0hB)K342 because E (beta_S) conformation "forbidden" or filtered. T0547 236 :S 1t0hB 341 :V T0547 238 :ITEIHP 1t0hB 343 :ISSPKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=36766 # 1p1xA.235.203 read from T0547.t2k.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)G235 (1p1xA)A203 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1p1xA)G205 because T (delta_L) conformation "forbidden" or filtered. T0547 236 :S 1p1xA 204 :G T0547 238 :ITEIHP 1p1xA 206 :VRTAED Number of specific fragments extracted= 2 number of extra gaps= 2 total=36768 # 7odcA.236.199 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 236 :SQITEIHPL 7odcA 200 :SGCTDPDTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36769 # 1qf5A.236.148 read from T0547.t2k.many.frag # found chain 1qf5A in template set T0547 236 :SQITEIHPL 1qf5A 149 :GDLFDKETF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36770 # 1lucA.236.192 read from T0547.t2k.many.frag # found chain 1lucA in training set T0547 236 :SQITEIHPL 1lucA 193 :SWIINTHEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36771 # 2fokA.236.297 read from T0547.t2k.many.frag # found chain 2fokA in template set T0547 236 :SQITEIHPL 2fokA 298 :TNLTDKEYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36772 # 1cliA.236.110 read from T0547.t2k.many.frag # found chain 1cliA in template set T0547 236 :SQITEIHPL 1cliA 111 :TGKLDVDTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36773 # 1jyoA.236.97 read from T0547.t2k.many.frag # found chain 1jyoA in template set Warning: unaligning (T0547)E240 (1jyoA)N102 because E (beta_S) conformation "forbidden" or filtered. T0547 236 :SQIT 1jyoA 98 :TDLT T0547 241 :IHPL 1jyoA 103 :TYHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36775 # 1sr9A.236.254 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)V255 Warning: unaligning (T0547)E240 (1sr9A)T259 because P (beta_P) conformation "forbidden" or filtered. T0547 237 :QIT 1sr9A 256 :EMT T0547 241 :IHPL 1sr9A 260 :PNVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=36777 # 3thiA.236.8 read from T0547.t2k.many.frag # found chain 3thiA in template set Warning: unaligning (T0547)E240 (3thiA)D21 because D (zeta) conformation "forbidden" or filtered. T0547 236 :SQIT 3thiA 17 :PYVP T0547 241 :IHPL 3thiA 22 :PARF Number of specific fragments extracted= 2 number of extra gaps= 1 total=36779 # 1uf3A.236.71 read from T0547.t2k.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 236 :SQIT 1uf3A 72 :PQDA T0547 241 :IHPL 1uf3A 77 :IWEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=36781 # 1l1lA.236.357 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 236 :SQITEIHPL 1l1lA 358 :SAFSGYQPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36782 # 1xtpA.236.167 read from T0547.t2k.many.frag # found chain 1xtpA in template set T0547 236 :SQITEIHPL 1xtpA 168 :AIYLTDADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36783 # 1j2rA.236.166 read from T0547.t2k.many.frag # found chain 1j2rA in training set T0547 236 :SQITEIHPL 1j2rA 167 :CSAASAEQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36784 # 1h05A.236.77 read from T0547.t2k.many.frag # found chain 1h05A in training set T0547 236 :SQITEIHPL 1h05A 78 :GLTHTSVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36785 # 1efdN.236.74 read from T0547.t2k.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)S236 (1efdN)G105 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1efdN)G107 because S (epsilon) conformation "forbidden" or filtered. T0547 237 :Q 1efdN 106 :Y T0547 239 :TEIHPL 1efdN 108 :PSPEML Number of specific fragments extracted= 2 number of extra gaps= 2 total=36787 # 1v33A.236.70 read from T0547.t2k.many.frag # found chain 1v33A in training set T0547 236 :SQITEIHPL 1v33A 51 :NQYTDIRDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36788 # 1jqlB.236.55 read from T0547.t2k.many.frag # found chain 1jqlB in template set T0547 236 :SQITEIHPL 1jqlB 56 :DPNTDWNAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36789 # 1p7tA.236.274 read from T0547.t2k.many.frag # found chain 1p7tA in template set Warning: unaligning (T0547)E240 (1p7tA)D279 because Y (epsilon') conformation "forbidden" or filtered. T0547 236 :SQIT 1p7tA 275 :VAAV T0547 241 :IHPL 1p7tA 280 :AEDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=36791 # 2apjA.236.201 read from T0547.t2k.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)Q237 (2apjA)G203 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T239 (2apjA)G205 because S (epsilon) conformation "forbidden" or filtered. T0547 236 :S 2apjA 202 :S T0547 238 :I 2apjA 204 :G T0547 240 :EIHPL 2apjA 206 :YIDKV Number of specific fragments extracted= 3 number of extra gaps= 2 total=36794 # 1ytlA.236.154 read from T0547.t2k.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)E240 (1ytlA)K159 because D (zeta) conformation "forbidden" or filtered. T0547 236 :SQIT 1ytlA 155 :NLWK T0547 241 :IHPL 1ytlA 160 :EEDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=36796 # 2bogX.236.188 read from T0547.t2k.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (2bogX)Y191 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (2bogX)Y191 T0547 236 :S 2bogX 189 :S T0547 239 :TEIHPL 2bogX 192 :RWTADE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36798 # 1rqbA.236.197 read from T0547.t2k.many.frag # found chain 1rqbA in template set Warning: unaligning (T0547)Q237 (1rqbA)A188 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1rqbA)L189 because G (3-10) conformation "forbidden" or filtered. T0547 236 :S 1rqbA 187 :A T0547 239 :TEIHPL 1rqbA 190 :LKPQPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=36800 # 1ofcX.236.159 read from T0547.t2k.many.frag # found chain 1ofcX in template set T0547 236 :SQITEIHPL 1ofcX 847 :TELQDIERI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36801 1urjA expands to /projects/compbio/data/pdb/1urj.pdb.gz 1urjA:# 1urjA.236.604 read from T0547.t2k.many.frag # adding 1urjA to template set # found chain 1urjA in template set Warning: unaligning (T0547)T239 (1urjA)T608 because G (3-10) conformation "forbidden" or filtered. T0547 236 :SQI 1urjA 605 :TII T0547 240 :EIHPL 1urjA 609 :NREAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36803 # 2basA.236.179 read from T0547.t2k.many.frag # found chain 2basA in template set T0547 236 :SQITEIHPL 2basA 156 :KESSNLDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36804 # 1e4fT.236.47 read from T0547.t2k.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)S236 (1e4fT)G48 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1e4fT)D52 because D (zeta) conformation "forbidden" or filtered. T0547 237 :QIT 1e4fT 49 :EIK T0547 241 :IHPL 1e4fT 53 :AIAF Number of specific fragments extracted= 2 number of extra gaps= 2 total=36806 # 1f60A.236.156 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)I238 (1f60A)K159 because L (left) conformation "forbidden" or filtered. T0547 236 :SQ 1f60A 157 :SV T0547 239 :TEIHPL 1f60A 160 :WDESRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=36808 # 1dfmA.236.93 read from T0547.t2k.many.frag # found chain 1dfmA in training set T0547 236 :SQITEIHPL 1dfmA 94 :VQFSNYPFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36809 # 1t0hB.236.139 read from T0547.t2k.many.frag # found chain 1t0hB in template set Warning: unaligning (T0547)Q237 (1t0hB)K342 because E (beta_S) conformation "forbidden" or filtered. T0547 236 :S 1t0hB 341 :V T0547 238 :ITEIHPL 1t0hB 343 :ISSPKVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36811 1dj7A expands to /projects/compbio/data/pdb/1dj7.pdb.gz 1dj7A:# 1dj7A.236.27 read from T0547.t2k.many.frag # adding 1dj7A to template set # found chain 1dj7A in template set T0547 236 :SQITEIHPL 1dj7A 28 :YFCSDLSVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36812 # 1thfD.236.201 read from T0547.t2k.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)S236 (1thfD)G202 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1thfD)K206 because Y (epsilon') conformation "forbidden" or filtered. T0547 237 :QIT 1thfD 203 :GAG T0547 241 :IHPL 1thfD 207 :MEHF Number of specific fragments extracted= 2 number of extra gaps= 2 total=36814 # 7odcA.237.200 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)T239 (7odcA)T203 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (7odcA)D204 because E (beta_S) conformation "forbidden" or filtered. T0547 237 :QI 7odcA 201 :GC T0547 241 :IHPLK 7odcA 205 :PDTFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36816 # 1lucA.237.193 read from T0547.t2k.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)I238 (1lucA)I195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1lucA)N197 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H242 (1lucA)H199 because H (helix) conformation "forbidden" or filtered. T0547 237 :Q 1lucA 194 :W T0547 239 :T 1lucA 196 :I T0547 241 :I 1lucA 198 :T T0547 243 :PLK 1lucA 200 :EKK Number of specific fragments extracted= 4 number of extra gaps= 3 total=36820 # 1qf5A.237.149 read from T0547.t2k.many.frag # found chain 1qf5A in template set Warning: unaligning (T0547)E240 (1qf5A)D153 because D (zeta) conformation "forbidden" or filtered. T0547 237 :QIT 1qf5A 150 :DLF T0547 241 :IHPLK 1qf5A 154 :KETFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=36822 # 1jqlB.237.56 read from T0547.t2k.many.frag # found chain 1jqlB in template set Warning: unaligning (T0547)I238 (1jqlB)N58 because G (3-10) conformation "forbidden" or filtered. T0547 237 :Q 1jqlB 57 :P T0547 239 :TEIHPLK 1jqlB 59 :TDWNAIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=36824 # 1jyoA.237.98 read from T0547.t2k.many.frag # found chain 1jyoA in template set T0547 237 :QITEIHPLK 1jyoA 99 :DLTNTYHII Number of specific fragments extracted= 1 number of extra gaps= 0 total=36825 # 3thiA.237.9 read from T0547.t2k.many.frag # found chain 3thiA in template set T0547 237 :QITEIHPLK 3thiA 18 :YVPDPARFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36826 # 1h05A.237.78 read from T0547.t2k.many.frag # found chain 1h05A in training set T0547 237 :QITEIHPLK 1h05A 79 :LTHTSVALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36827 # 1cliA.237.111 read from T0547.t2k.many.frag # found chain 1cliA in template set T0547 237 :QITEIHPLK 1cliA 112 :GKLDVDTAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36828 # 1urjA.237.605 read from T0547.t2k.many.frag # found chain 1urjA in template set Warning: unaligning (T0547)E240 (1urjA)N609 because E (beta_S) conformation "forbidden" or filtered. T0547 237 :QIT 1urjA 606 :IIT T0547 241 :IHPLK 1urjA 610 :REALH Number of specific fragments extracted= 2 number of extra gaps= 1 total=36830 # 2fokA.237.298 read from T0547.t2k.many.frag # found chain 2fokA in template set T0547 237 :QITEIHPLK 2fokA 299 :NLTDKEYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36831 # 1l1lA.237.358 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 237 :QITEIHPLK 1l1lA 359 :AFSGYQPIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36832 # 1xtpA.237.168 read from T0547.t2k.many.frag # found chain 1xtpA in template set T0547 237 :QITEIHPLK 1xtpA 169 :IYLTDADFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36833 # 1j2rA.237.167 read from T0547.t2k.many.frag # found chain 1j2rA in training set T0547 237 :QITEIHPLK 1j2rA 168 :SAASAEQHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36834 # 1ytlA.237.155 read from T0547.t2k.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)E240 (1ytlA)K159 because D (zeta) conformation "forbidden" or filtered. T0547 237 :QIT 1ytlA 156 :LWK T0547 241 :IHPLK 1ytlA 160 :EEDYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36836 # 1v33A.237.71 read from T0547.t2k.many.frag # found chain 1v33A in training set T0547 237 :QITEIHPLK 1v33A 52 :QYTDIRDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36837 # 1efdN.237.75 read from T0547.t2k.many.frag # found chain 1efdN in template set T0547 237 :QITEIHPLK 1efdN 106 :YGPSPEMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36838 # 1sr9A.237.255 read from T0547.t2k.many.frag # found chain 1sr9A in template set T0547 237 :QITEIHPLK 1sr9A 256 :EMTTPNVYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36839 # 1dj7A.237.28 read from T0547.t2k.many.frag # found chain 1dj7A in template set T0547 237 :QITEIHPLK 1dj7A 29 :FCSDLSVTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36840 # 1p7tA.237.275 read from T0547.t2k.many.frag # found chain 1p7tA in template set Warning: unaligning (T0547)E240 (1p7tA)D279 because Y (epsilon') conformation "forbidden" or filtered. T0547 237 :QIT 1p7tA 276 :AAV T0547 241 :IHPLK 1p7tA 280 :AEDKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36842 # 1f60A.237.157 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)T239 (1f60A)W160 because L (left) conformation "forbidden" or filtered. T0547 237 :QI 1f60A 158 :VK T0547 240 :EIHPLK 1f60A 161 :DESRFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=36844 # 2bk9A.237.50 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 237 :QITEIHPLK 2bk9A 51 :ELSGNARFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36845 1r8gA expands to /projects/compbio/data/pdb/1r8g.pdb.gz 1r8gA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1r8gA.237.64 read from T0547.t2k.many.frag # adding 1r8gA to template set # found chain 1r8gA in template set Warning: unaligning (T0547)E240 (1r8gA)D68 because Y (epsilon') conformation "forbidden" or filtered. T0547 237 :QIT 1r8gA 65 :VCR T0547 241 :IHPLK 1r8gA 69 :INQAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=36847 # 2apjA.237.202 read from T0547.t2k.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)Q237 (2apjA)G203 because T (delta_L) conformation "forbidden" or filtered. T0547 238 :ITEIHPLK 2apjA 204 :GGYIDKVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=36848 # 1ie9A.237.176 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 237 :QITEIHPLK 1ie9A 345 :GVQDAALIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36849 # 1yzxA.237.130 read from T0547.t2k.many.frag # found chain 1yzxA in template set T0547 237 :QITEIHPLK 1yzxA 131 :DITEPQSIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36850 # 1efyA.237.89 read from T0547.t2k.many.frag # found chain 1efyA in template set T0547 237 :QITEIHPLK 1efyA 751 :LLSNLEYIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36851 # 1t9hA.237.127 read from T0547.t2k.many.frag # found chain 1t9hA in training set T0547 237 :QITEIHPLK 1t9hA 119 :DLIEDQDTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36852 # 2bogX.237.189 read from T0547.t2k.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (2bogX)Y191 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (2bogX)Y191 T0547 239 :TEIHPLK 2bogX 192 :RWTADEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=36853 # 1uf3A.237.72 read from T0547.t2k.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 237 :QIT 1uf3A 73 :QDA T0547 241 :IHPLK 1uf3A 77 :IWEYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36855 # 1rqbA.237.198 read from T0547.t2k.many.frag # found chain 1rqbA in template set Warning: unaligning (T0547)I238 (1rqbA)L189 because G (3-10) conformation "forbidden" or filtered. T0547 237 :Q 1rqbA 188 :A T0547 239 :TEIHPLK 1rqbA 190 :LKPQPAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=36857 # 7odcA.238.201 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 238 :ITEIHPLKK 7odcA 202 :CTDPDTFVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36858 # 1lucA.238.194 read from T0547.t2k.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)I238 (1lucA)I195 because G (3-10) conformation "forbidden" or filtered. T0547 239 :TEIHPLKK 1lucA 196 :INTHEKKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=36859 # 1h05A.238.79 read from T0547.t2k.many.frag # found chain 1h05A in training set T0547 238 :ITEIHPLKK 1h05A 80 :THTSVALRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36860 # 2bk9A.238.51 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 238 :ITEIHPLKK 2bk9A 52 :LSGNARFRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36861 # 1urjA.238.606 read from T0547.t2k.many.frag # found chain 1urjA in template set T0547 238 :ITEIHPLKK 1urjA 607 :ITNREALHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36862 # 1qf5A.238.150 read from T0547.t2k.many.frag # found chain 1qf5A in template set T0547 238 :ITEIHPLKK 1qf5A 151 :LFDKETFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36863 # 1jqlB.238.57 read from T0547.t2k.many.frag # found chain 1jqlB in template set T0547 238 :ITEIHPLKK 1jqlB 58 :NTDWNAIFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36864 # 1ytlA.238.156 read from T0547.t2k.many.frag # found chain 1ytlA in training set T0547 238 :ITEIHPLKK 1ytlA 157 :WKKEEDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36865 # 1kr7A.238.35 read from T0547.t2k.many.frag # found chain 1kr7A in training set T0547 238 :ITEIHPLKK 1kr7A 35 :LKGNAAYKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36866 # 1l1lA.238.359 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 238 :ITEIHPLKK 1l1lA 360 :FSGYQPIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36867 # 1jyoA.238.99 read from T0547.t2k.many.frag # found chain 1jyoA in template set T0547 238 :ITEIHPLKK 1jyoA 100 :LTNTYHIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36868 # 1ie9A.238.177 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 238 :ITEIHPLKK 1ie9A 346 :VQDAALIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36869 # 1e6iA.238.67 read from T0547.t2k.many.frag # found chain 1e6iA in template set T0547 238 :ITEIHPLKK 1e6iA 386 :YQKMEDFIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36870 # 1v33A.238.72 read from T0547.t2k.many.frag # found chain 1v33A in training set T0547 238 :ITEIHPLKK 1v33A 53 :YTDIRDLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=36871 # 1efyA.238.90 read from T0547.t2k.many.frag # found chain 1efyA in template set T0547 238 :ITEIHPLKK 1efyA 752 :LSNLEYIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36872 # 1xtpA.238.169 read from T0547.t2k.many.frag # found chain 1xtpA in template set T0547 238 :ITEIHPLKK 1xtpA 170 :YLTDADFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36873 # 1wcwA.238.201 read from T0547.t2k.many.frag # found chain 1wcwA in training set T0547 238 :ITEIHPLKK 1wcwA 202 :AKDPKALRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36874 # 1dj7A.238.29 read from T0547.t2k.many.frag # found chain 1dj7A in template set T0547 238 :ITEIHPLKK 1dj7A 30 :CSDLSVTAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36875 # 1efdN.238.76 read from T0547.t2k.many.frag # found chain 1efdN in template set T0547 238 :ITEIHPLKK 1efdN 107 :GPSPEMLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36876 # 1r8gA.238.65 read from T0547.t2k.many.frag # found chain 1r8gA in template set T0547 238 :ITEIHPLKK 1r8gA 66 :CRDINQAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36877 # 1yzxA.238.131 read from T0547.t2k.many.frag # found chain 1yzxA in template set T0547 238 :ITEIHPLKK 1yzxA 132 :ITEPQSILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36878 # 1n93X.238.256 read from T0547.t2k.many.frag # found chain 1n93X in training set T0547 238 :ITEIHPLKK 1n93X 252 :TLTIPVVAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36879 1qzmA expands to /projects/compbio/data/pdb/1qzm.pdb.gz 1qzmA:# 1qzmA.238.47 read from T0547.t2k.many.frag # adding 1qzmA to template set # found chain 1qzmA in template set Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1qzmA)E538 Warning: unaligning (T0547)E240 (1qzmA)G540 because P (beta_P) conformation "forbidden" or filtered. T0547 239 :T 1qzmA 539 :A T0547 241 :IHPLKK 1qzmA 541 :VRGLER Number of specific fragments extracted= 2 number of extra gaps= 2 total=36881 # 1f60A.238.158 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)I238 (1f60A)K159 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T239 (1f60A)W160 because L (left) conformation "forbidden" or filtered. T0547 240 :EIHPLKK 1f60A 161 :DESRFQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=36882 # 1cliA.238.112 read from T0547.t2k.many.frag # found chain 1cliA in template set T0547 238 :ITEIHPLKK 1cliA 113 :KLDVDTASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36883 # 1j2rA.238.168 read from T0547.t2k.many.frag # found chain 1j2rA in training set Warning: unaligning (T0547)E240 (1j2rA)S171 because E (beta_S) conformation "forbidden" or filtered. T0547 238 :IT 1j2rA 169 :AA T0547 241 :IHPLKK 1j2rA 172 :AEQHNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=36885 # 1e4fT.238.49 read from T0547.t2k.many.frag # found chain 1e4fT in template set T0547 238 :ITEIHPLKK 1e4fT 50 :IKDAIAFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36886 # 3thiA.238.10 read from T0547.t2k.many.frag # found chain 3thiA in template set T0547 238 :ITEIHPLKK 3thiA 19 :VPDPARFQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36887 # 1tr9A.238.36 read from T0547.t2k.many.frag # found chain 1tr9A in training set T0547 238 :ITEIHPLKK 1tr9A 36 :YHDNQQLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36888 # 1onwA.238.171 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)I238 (1onwA)A172 because L (left) conformation "forbidden" or filtered. T0547 239 :TEIHPLKK 1onwA 173 :PDVYHLAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=36889 # 7odcA.239.202 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 239 :TEIHPLKKA 7odcA 203 :TDPDTFVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36890 # 2bk9A.239.52 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 239 :TEIHPLKKA 2bk9A 53 :SGNARFRAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36891 # 1ie9A.239.178 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 239 :TEIHPLKKA 1ie9A 347 :QDAALIEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36892 # 1qf5A.239.151 read from T0547.t2k.many.frag # found chain 1qf5A in template set Warning: unaligning (T0547)E240 (1qf5A)D153 because D (zeta) conformation "forbidden" or filtered. T0547 239 :T 1qf5A 152 :F T0547 241 :IHPLKKA 1qf5A 154 :KETFAEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=36894 # 1kr7A.239.36 read from T0547.t2k.many.frag # found chain 1kr7A in training set T0547 239 :TEIHPLKKA 1kr7A 36 :KGNAAYKTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36895 # 1lucA.239.195 read from T0547.t2k.many.frag # found chain 1lucA in training set T0547 239 :TEIHPLKKA 1lucA 196 :INTHEKKAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36896 # 1h05A.239.80 read from T0547.t2k.many.frag # found chain 1h05A in training set T0547 239 :TEIHPLKKA 1h05A 81 :HTSVALRDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36897 # 1urjA.239.607 read from T0547.t2k.many.frag # found chain 1urjA in template set T0547 239 :TEIHPLKKA 1urjA 608 :TNREALHTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36898 # 1qzmA.239.48 read from T0547.t2k.many.frag # found chain 1qzmA in template set T0547 239 :TEIHPLKKA 1qzmA 539 :AGVRGLERE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36899 # 1n93X.239.257 read from T0547.t2k.many.frag # found chain 1n93X in training set T0547 239 :TEIHPLKKA 1n93X 253 :LTIPVVAYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36900 # 1ytlA.239.157 read from T0547.t2k.many.frag # found chain 1ytlA in training set T0547 239 :TEIHPLKKA 1ytlA 158 :KKEEDYLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36901 # 1jqlB.239.58 read from T0547.t2k.many.frag # found chain 1jqlB in template set T0547 239 :TEIHPLKKA 1jqlB 59 :TDWNAIFSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36902 # 1jyoA.239.100 read from T0547.t2k.many.frag # found chain 1jyoA in template set T0547 239 :TEIHPLKKA 1jyoA 101 :TNTYHIISQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36903 # 1efyA.239.91 read from T0547.t2k.many.frag # found chain 1efyA in template set T0547 239 :TEIHPLKKA 1efyA 753 :SNLEYIQAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36904 # 1va6A.239.482 read from T0547.t2k.many.frag # found chain 1va6A in template set T0547 239 :TEIHPLKKA 1va6A 483 :LREEDFVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36905 # 1f60A.239.159 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)T239 (1f60A)W160 because L (left) conformation "forbidden" or filtered. T0547 240 :EIHPLKKA 1f60A 161 :DESRFQEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=36906 # 1r0dA.239.132 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 239 :TEIHPLKKA 1r0dA 898 :GKYEELIVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=36907 1hf8A expands to /projects/compbio/data/pdb/1hf8.pdb.gz 1hf8A:# 1hf8A.239.158 read from T0547.t2k.many.frag # adding 1hf8A to template set # found chain 1hf8A in template set T0547 239 :TEIHPLKKA 1hf8A 159 :MNTEKLLKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36908 # 1r8gA.239.66 read from T0547.t2k.many.frag # found chain 1r8gA in template set Warning: unaligning (T0547)E240 (1r8gA)D68 because Y (epsilon') conformation "forbidden" or filtered. T0547 239 :T 1r8gA 67 :R T0547 241 :IHPLKKA 1r8gA 69 :INQAAGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=36910 # 1yzxA.239.132 read from T0547.t2k.many.frag # found chain 1yzxA in template set T0547 239 :TEIHPLKKA 1yzxA 133 :TEPQSILAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36911 # 256bA.239.20 read from T0547.t2k.many.frag # found chain 256bA in training set Warning: unaligning (T0547)E240 (256bA)N22 because Y (epsilon') conformation "forbidden" or filtered. T0547 239 :T 256bA 21 :D T0547 241 :IHPLKKA 256bA 23 :AAQVKDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=36913 1fc3A expands to /projects/compbio/data/pdb/1fc3.pdb.gz 1fc3A:Skipped atom 69, because occupancy 0.500 <= existing 0.500 in 1fc3A Skipped atom 97, because occupancy 0.500 <= existing 0.500 in 1fc3A Skipped atom 99, because occupancy 0.500 <= existing 0.500 in 1fc3A Skipped atom 101, because occupancy 0.500 <= existing 0.500 in 1fc3A # 1fc3A.239.59 read from T0547.t2k.many.frag # adding 1fc3A to template set # found chain 1fc3A in template set T0547 239 :TEIHPLKKA 1fc3A 199 :TTASRVERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36914 # 1pq1A.239.134 read from T0547.t2k.many.frag # found chain 1pq1A in training set Warning: unaligning (T0547)E240 (1pq1A)N136 because Y (epsilon') conformation "forbidden" or filtered. T0547 239 :T 1pq1A 135 :V T0547 241 :IHPLKKA 1pq1A 137 :WGRIVAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=36916 # 1xqoA.239.99 read from T0547.t2k.many.frag # found chain 1xqoA in training set Warning: unaligning (T0547)E240 (1xqoA)G101 because L (left) conformation "forbidden" or filtered. T0547 239 :T 1xqoA 100 :I T0547 241 :IHPLKKA 1xqoA 102 :VEARKKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=36918 # 1es9A.239.142 read from T0547.t2k.many.frag # found chain 1es9A in training set T0547 239 :TEIHPLKKA 1es9A 143 :QHPNPLREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36919 # 1dj7A.239.30 read from T0547.t2k.many.frag # found chain 1dj7A in template set T0547 239 :TEIHPLKKA 1dj7A 31 :SDLSVTAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36920 # 1ki9A.239.142 read from T0547.t2k.many.frag # found chain 1ki9A in template set T0547 239 :TEIHPLKKA 1ki9A 143 :ETTAGIEEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36921 # 1ug6A.239.352 read from T0547.t2k.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)E240 (1ug6A)E354 because P (beta_P) conformation "forbidden" or filtered. T0547 239 :T 1ug6A 353 :V T0547 241 :IHPLKKA 1ug6A 355 :DPERVAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=36923 # 1yiiA.239.187 read from T0547.t2k.many.frag # found chain 1yiiA in training set Warning: unaligning (T0547)E240 (1yiiA)D190 because L (left) conformation "forbidden" or filtered. T0547 239 :T 1yiiA 189 :T T0547 241 :IHPLKKA 1yiiA 191 :EETFITI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36925 # 1xtpA.239.170 read from T0547.t2k.many.frag # found chain 1xtpA in template set T0547 239 :TEIHPLKKA 1xtpA 171 :LTDADFVKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36926 # 7odcA.240.203 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 240 :EIHPLKKAL 7odcA 204 :DPDTFVQAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36927 # 2bk9A.240.53 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 240 :EIHPLKKAL 2bk9A 54 :GNARFRAHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36928 # 1kr7A.240.37 read from T0547.t2k.many.frag # found chain 1kr7A in training set T0547 240 :EIHPLKKAL 1kr7A 37 :GNAAYKTQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36929 # 1ie9A.240.179 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 240 :EIHPLKKAL 1ie9A 348 :DAALIEAIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36930 # 1qf5A.240.152 read from T0547.t2k.many.frag # found chain 1qf5A in template set T0547 240 :EIHPLKKAL 1qf5A 153 :DKETFAEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36931 # 1hf8A.240.159 read from T0547.t2k.many.frag # found chain 1hf8A in template set T0547 240 :EIHPLKKAL 1hf8A 160 :NTEKLLKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36932 # 256bA.240.21 read from T0547.t2k.many.frag # found chain 256bA in training set Warning: unaligning (T0547)E240 (256bA)N22 because Y (epsilon') conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 256bA 23 :AAQVKDAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36933 # 1r0dA.240.133 read from T0547.t2k.many.frag # found chain 1r0dA in template set Warning: unaligning (T0547)E240 (1r0dA)K899 because P (beta_P) conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1r0dA 900 :YEELIVCS Number of specific fragments extracted= 1 number of extra gaps= 1 total=36934 # 1ki9A.240.143 read from T0547.t2k.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)E240 (1ki9A)T144 because P (beta_P) conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1ki9A 145 :TAGIEEHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=36935 # 1h05A.240.81 read from T0547.t2k.many.frag # found chain 1h05A in training set T0547 240 :EIHPLKKAL 1h05A 82 :TSVALRDAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=36936 # 1lucA.240.196 read from T0547.t2k.many.frag # found chain 1lucA in training set T0547 240 :EIHPLKKAL 1lucA 197 :NTHEKKAQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36937 # 1jyoA.240.101 read from T0547.t2k.many.frag # found chain 1jyoA in template set Warning: unaligning (T0547)E240 (1jyoA)N102 because E (beta_S) conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1jyoA 103 :TYHIISQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36938 # 1xqoA.240.100 read from T0547.t2k.many.frag # found chain 1xqoA in training set Warning: unaligning (T0547)E240 (1xqoA)G101 because L (left) conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1xqoA 102 :VEARKKRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=36939 # 1va6A.240.483 read from T0547.t2k.many.frag # found chain 1va6A in template set T0547 240 :EIHPLKKAL 1va6A 484 :REEDFVAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=36940 # 1n93X.240.258 read from T0547.t2k.many.frag # found chain 1n93X in training set T0547 240 :EIHPLKKAL 1n93X 254 :TIPVVAYEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36941 # 1qzmA.240.49 read from T0547.t2k.many.frag # found chain 1qzmA in template set T0547 240 :EIHPLKKAL 1qzmA 540 :GVRGLEREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36942 # 1urjA.240.608 read from T0547.t2k.many.frag # found chain 1urjA in template set T0547 240 :EIHPLKKAL 1urjA 609 :NREALHTVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36943 1kufA expands to /projects/compbio/data/pdb/1kuf.pdb.gz 1kufA:# 1kufA.240.26 read from T0547.t2k.many.frag # adding 1kufA to template set # found chain 1kufA in template set T0547 240 :EIHPLKKAL 1kufA 27 :NFKKIRKRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36944 # 1jqlB.240.59 read from T0547.t2k.many.frag # found chain 1jqlB in template set Warning: unaligning (T0547)E240 (1jqlB)D60 because N (gamma') conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1jqlB 61 :WNAIFSLC Number of specific fragments extracted= 1 number of extra gaps= 1 total=36945 2etsA expands to /projects/compbio/data/pdb/2ets.pdb.gz 2etsA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 204, because occupancy 0.500 <= existing 0.500 in 2etsA Skipped atom 208, because occupancy 0.500 <= existing 0.500 in 2etsA Skipped atom 210, because occupancy 0.500 <= existing 0.500 in 2etsA Skipped atom 212, because occupancy 0.500 <= existing 0.500 in 2etsA Skipped atom 214, because occupancy 0.500 <= existing 0.500 in 2etsA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2etsA.240.98 read from T0547.t2k.many.frag # adding 2etsA to template set # found chain 2etsA in template set Warning: unaligning (T0547)E240 (2etsA)S87 because P (beta_P) conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 2etsA 88 :RKLFIEKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36946 # 1r8gA.240.67 read from T0547.t2k.many.frag # found chain 1r8gA in template set Warning: unaligning (T0547)E240 (1r8gA)D68 because Y (epsilon') conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1r8gA 69 :INQAAGQF Number of specific fragments extracted= 1 number of extra gaps= 1 total=36947 # 1yzxA.240.133 read from T0547.t2k.many.frag # found chain 1yzxA in template set T0547 240 :EIHPLKKAL 1yzxA 134 :EPQSILAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36948 # 1onwA.240.173 read from T0547.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)E240 (1onwA)D174 because P (beta_P) conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1onwA 175 :VYHLANMA Number of specific fragments extracted= 1 number of extra gaps= 1 total=36949 # 1efyA.240.92 read from T0547.t2k.many.frag # found chain 1efyA in template set T0547 240 :EIHPLKKAL 1efyA 754 :NLEYIQAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36950 # 1ytlA.240.158 read from T0547.t2k.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)E240 (1ytlA)K159 because D (zeta) conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1ytlA 160 :EEDYLKLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36951 1wgzA expands to /projects/compbio/data/pdb/1wgz.pdb.gz 1wgzA:# 1wgzA.240.126 read from T0547.t2k.many.frag # adding 1wgzA to template set # found chain 1wgzA in template set T0547 240 :EIHPLKKAL 1wgzA 127 :DWRGFLPYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36952 # 1fc3A.240.60 read from T0547.t2k.many.frag # found chain 1fc3A in template set T0547 240 :EIHPLKKAL 1fc3A 200 :TASRVERAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36953 # 1pq1A.240.135 read from T0547.t2k.many.frag # found chain 1pq1A in training set T0547 240 :EIHPLKKAL 1pq1A 136 :NWGRIVAFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36954 # 1f60A.240.160 read from T0547.t2k.many.frag # found chain 1f60A in training set T0547 240 :EIHPLKKAL 1f60A 161 :DESRFQEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36955 # 1r5lA.240.45 read from T0547.t2k.many.frag # found chain 1r5lA in training set T0547 240 :EIHPLKKAL 1r5lA 62 :DLDLAWRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36956 # 7odcA.241.204 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 241 :IHPLKKALN 7odcA 205 :PDTFVQAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36957 # 2bk9A.241.54 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 241 :IHPLKKALN 2bk9A 55 :NARFRAHAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36958 # 1hf8A.241.160 read from T0547.t2k.many.frag # found chain 1hf8A in template set T0547 241 :IHPLKKALN 1hf8A 161 :TEKLLKTVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36959 # 1kr7A.241.38 read from T0547.t2k.many.frag # found chain 1kr7A in training set T0547 241 :IHPLKKALN 1kr7A 38 :NAAYKTQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36960 # 256bA.241.22 read from T0547.t2k.many.frag # found chain 256bA in training set T0547 241 :IHPLKKALN 256bA 23 :AAQVKDALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36961 # 2etsA.241.99 read from T0547.t2k.many.frag # found chain 2etsA in template set T0547 241 :IHPLKKALN 2etsA 88 :RKLFIEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36962 # 1ie9A.241.180 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 241 :IHPLKKALN 1ie9A 349 :AALIEAIQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36963 # 1r0dA.241.134 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 241 :IHPLKKALN 1r0dA 900 :YEELIVCSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36964 # 1kufA.241.27 read from T0547.t2k.many.frag # found chain 1kufA in template set T0547 241 :IHPLKKALN 1kufA 28 :FKKIRKRVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36965 # 1ki9A.241.144 read from T0547.t2k.many.frag # found chain 1ki9A in template set T0547 241 :IHPLKKALN 1ki9A 145 :TAGIEEHQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36966 # 1va6A.241.484 read from T0547.t2k.many.frag # found chain 1va6A in template set T0547 241 :IHPLKKALN 1va6A 485 :EEDFVAERE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36967 # 1qf5A.241.153 read from T0547.t2k.many.frag # found chain 1qf5A in template set T0547 241 :IHPLKKALN 1qf5A 154 :KETFAEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36968 # 1xqoA.241.101 read from T0547.t2k.many.frag # found chain 1xqoA in training set T0547 241 :IHPLKKALN 1xqoA 102 :VEARKKRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36969 # 1n93X.241.259 read from T0547.t2k.many.frag # found chain 1n93X in training set T0547 241 :IHPLKKALN 1n93X 255 :IPVVAYEIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36970 # 1r8gA.241.68 read from T0547.t2k.many.frag # found chain 1r8gA in template set T0547 241 :IHPLKKALN 1r8gA 69 :INQAAGQFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36971 # 1n2zA.241.107 read from T0547.t2k.many.frag # found chain 1n2zA in template set T0547 241 :IHPLKKALN 1n2zA 129 :PDKAEQAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36972 # 1lucA.241.197 read from T0547.t2k.many.frag # found chain 1lucA in training set T0547 241 :IHPLKKALN 1lucA 198 :THEKKAQLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36973 # 1ug6A.241.354 read from T0547.t2k.many.frag # found chain 1ug6A in training set T0547 241 :IHPLKKALN 1ug6A 355 :DPERVAYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36974 # 1f60A.241.161 read from T0547.t2k.many.frag # found chain 1f60A in training set T0547 241 :IHPLKKALN 1f60A 162 :ESRFQEIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36975 # 1wgzA.241.127 read from T0547.t2k.many.frag # found chain 1wgzA in template set T0547 241 :IHPLKKALN 1wgzA 128 :WRGFLPYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36976 # 1qzmA.241.50 read from T0547.t2k.many.frag # found chain 1qzmA in template set T0547 241 :IHPLKKALN 1qzmA 541 :VRGLEREIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36977 # 1urjA.241.609 read from T0547.t2k.many.frag # found chain 1urjA in template set T0547 241 :IHPLKKALN 1urjA 610 :REALHTVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36978 # 1rtqA.241.38 read from T0547.t2k.many.frag # found chain 1rtqA in training set T0547 241 :IHPLKKALN 1rtqA 39 :TTSGAQASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36979 # 2ccyA.241.78 read from T0547.t2k.many.frag # found chain 2ccyA in training set T0547 241 :IHPLKKALN 2ccyA 79 :SAEFLEGWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36980 # 1h05A.241.82 read from T0547.t2k.many.frag # found chain 1h05A in training set T0547 241 :IHPLKKALN 1h05A 83 :SVALRDACA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36981 # 1r5lA.241.46 read from T0547.t2k.many.frag # found chain 1r5lA in training set T0547 241 :IHPLKKALN 1r5lA 63 :LDLAWRLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36982 # 1pq1A.241.136 read from T0547.t2k.many.frag # found chain 1pq1A in training set T0547 241 :IHPLKKALN 1pq1A 137 :WGRIVAFFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36983 # 1m0kA.241.143 read from T0547.t2k.many.frag # found chain 1m0kA in training set Warning: unaligning (T0547)N249 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1m0kA)I140 T0547 241 :IHPLKKAL 1m0kA 131 :YSYRFVWW Number of specific fragments extracted= 1 number of extra gaps= 1 total=36984 1yviA expands to /projects/compbio/data/pdb/1yvi.pdb.gz 1yviA:Skipped atom 651, because occupancy 0.350 <= existing 0.650 in 1yviA Skipped atom 653, because occupancy 0.350 <= existing 0.650 in 1yviA # 1yviA.241.109 read from T0547.t2k.many.frag # adding 1yviA to template set # found chain 1yviA in template set T0547 241 :IHPLKKALN 1yviA 110 :RDGCLMALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36985 # 1tqgA.241.56 read from T0547.t2k.many.frag # found chain 1tqgA in training set T0547 241 :IHPLKKALN 1tqgA 56 :FSSMAKLCH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36986 # 7odcA.242.205 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 242 :HPLKKALNE 7odcA 206 :DTFVQAVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36987 # 2bk9A.242.55 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 242 :HPLKKALNE 2bk9A 56 :ARFRAHAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36988 # 256bA.242.23 read from T0547.t2k.many.frag # found chain 256bA in training set T0547 242 :HPLKKALNE 256bA 24 :AQVKDALTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36989 # 1hf8A.242.161 read from T0547.t2k.many.frag # found chain 1hf8A in template set T0547 242 :HPLKKALNE 1hf8A 162 :EKLLKTVPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36990 # 1kr7A.242.39 read from T0547.t2k.many.frag # found chain 1kr7A in training set T0547 242 :HPLKKALNE 1kr7A 39 :AAYKTQAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36991 # 2etsA.242.100 read from T0547.t2k.many.frag # found chain 2etsA in template set T0547 242 :HPLKKALNE 2etsA 89 :KLFIEKLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36992 # 1n2zA.242.108 read from T0547.t2k.many.frag # found chain 1n2zA in template set T0547 242 :HPLKKALNE 1n2zA 130 :DKAEQAAQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36993 # 1ie9A.242.181 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 242 :HPLKKALNE 1ie9A 350 :ALIEAIQDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36994 # 1r0dA.242.135 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 242 :HPLKKALNE 1r0dA 901 :EELIVCSHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36995 # 1rtqA.242.39 read from T0547.t2k.many.frag # found chain 1rtqA in training set T0547 242 :HPLKKALNE 1rtqA 40 :TSGAQASDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=36996 # 1ug6A.242.355 read from T0547.t2k.many.frag # found chain 1ug6A in training set T0547 242 :HPLKKALNE 1ug6A 356 :PERVAYLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36997 # 1m0kA.242.144 read from T0547.t2k.many.frag # found chain 1m0kA in training set Warning: unaligning (T0547)N249 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1m0kA)I140 Warning: unaligning (T0547)E250 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1m0kA)I140 T0547 242 :HPLKKAL 1m0kA 132 :SYRFVWW Number of specific fragments extracted= 1 number of extra gaps= 1 total=36998 # 1xqoA.242.102 read from T0547.t2k.many.frag # found chain 1xqoA in training set T0547 242 :HPLKKALNE 1xqoA 103 :EARKKRALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36999 # 1v7wA.242.283 read from T0547.t2k.many.frag # found chain 1v7wA in training set T0547 242 :HPLKKALNE 1v7wA 284 :ANIDAAFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37000 # 1kufA.242.28 read from T0547.t2k.many.frag # found chain 1kufA in template set T0547 242 :HPLKKALNE 1kufA 29 :KKIRKRVHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37001 # 1ki9A.242.145 read from T0547.t2k.many.frag # found chain 1ki9A in template set T0547 242 :HPLKKALNE 1ki9A 146 :AGIEEHQIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37002 # 1f60A.242.162 read from T0547.t2k.many.frag # found chain 1f60A in training set T0547 242 :HPLKKALNE 1f60A 163 :SRFQEIVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37003 # 1yviA.242.110 read from T0547.t2k.many.frag # found chain 1yviA in template set T0547 242 :HPLKKALNE 1yviA 111 :DGCLMALAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37004 1yb0A expands to /projects/compbio/data/pdb/1yb0.pdb.gz 1yb0A:# 1yb0A.242.98 read from T0547.t2k.many.frag # adding 1yb0A to template set # found chain 1yb0A in template set T0547 242 :HPLKKALNE 1yb0A 99 :DRYYKAENN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37005 # 1onwA.242.175 read from T0547.t2k.many.frag # found chain 1onwA in training set T0547 242 :HPLKKALNE 1onwA 176 :YHLANMAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37006 # 1es9A.242.145 read from T0547.t2k.many.frag # found chain 1es9A in training set T0547 242 :HPLKKALNE 1es9A 146 :NPLREKNRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37007 # 1r5lA.242.47 read from T0547.t2k.many.frag # found chain 1r5lA in training set T0547 242 :HPLKKALNE 1r5lA 64 :DLAWRLLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37008 # 1r8gA.242.69 read from T0547.t2k.many.frag # found chain 1r8gA in template set T0547 242 :HPLKKALNE 1r8gA 70 :NQAAGQFSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37009 # 1va6A.242.485 read from T0547.t2k.many.frag # found chain 1va6A in template set T0547 242 :HPLKKALNE 1va6A 486 :EDFVAEREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37010 # 1lucA.242.198 read from T0547.t2k.many.frag # found chain 1lucA in training set T0547 242 :HPLKKALNE 1lucA 199 :HEKKAQLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37011 # 2ccyA.242.79 read from T0547.t2k.many.frag # found chain 2ccyA in training set Warning: unaligning (T0547)E250 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 T0547 242 :HPLKKALN 2ccyA 80 :AEFLEGWK Number of specific fragments extracted= 1 number of extra gaps= 1 total=37012 # 1jyoA.242.103 read from T0547.t2k.many.frag # found chain 1jyoA in template set T0547 242 :HPLKKALNE 1jyoA 104 :YHIISQLES Number of specific fragments extracted= 1 number of extra gaps= 0 total=37013 # 1qf5A.242.154 read from T0547.t2k.many.frag # found chain 1qf5A in template set T0547 242 :HPLKKALNE 1qf5A 155 :ETFAEKLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37014 # 1zb1A.242.145 read from T0547.t2k.many.frag # found chain 1zb1A in template set T0547 242 :HPLKKALNE 1zb1A 141 :KNSIANLTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37015 1m4tA expands to /projects/compbio/data/pdb/1m4t.pdb.gz 1m4tA:Bad short name: CA1 for alphabet: pdb_atoms Bad short name: CA2 for alphabet: pdb_atoms Bad short name: OA1 for alphabet: pdb_atoms Bad short name: CA3 for alphabet: pdb_atoms Bad short name: CA4 for alphabet: pdb_atoms Skipped atom 1788, because occupancy 0.500 <= existing 0.500 in 1m4tA Skipped atom 1790, because occupancy 0.500 <= existing 0.500 in 1m4tA # 1m4tA.242.172 read from T0547.t2k.many.frag # adding 1m4tA to template set # found chain 1m4tA in template set T0547 242 :HPLKKALNE 1m4tA 173 :DEQDAFAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37016 # 1hf8A.243.162 read from T0547.t2k.many.frag # found chain 1hf8A in template set T0547 243 :PLKKALNEA 1hf8A 163 :KLLKTVPII Number of specific fragments extracted= 1 number of extra gaps= 0 total=37017 # 7odcA.243.206 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 243 :PLKKALNEA 7odcA 207 :TFVQAVSDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37018 # 2bk9A.243.56 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 243 :PLKKALNEA 2bk9A 57 :RFRAHAGRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37019 # 2etsA.243.101 read from T0547.t2k.many.frag # found chain 2etsA in template set T0547 243 :PLKKALNEA 2etsA 90 :LFIEKLKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37020 # 256bA.243.24 read from T0547.t2k.many.frag # found chain 256bA in training set T0547 243 :PLKKALNEA 256bA 25 :QVKDALTKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37021 # 1r0dA.243.136 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 243 :PLKKALNEA 1r0dA 902 :ELIVCSHEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37022 # 1kr7A.243.40 read from T0547.t2k.many.frag # found chain 1kr7A in training set T0547 243 :PLKKALNEA 1kr7A 40 :AYKTQAGKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37023 # 1yviA.243.111 read from T0547.t2k.many.frag # found chain 1yviA in template set T0547 243 :PLKKALNEA 1yviA 112 :GCLMALAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37024 # 1m0kA.243.145 read from T0547.t2k.many.frag # found chain 1m0kA in training set Warning: unaligning (T0547)N249 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1m0kA)I140 Warning: unaligning (T0547)E250 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1m0kA)I140 T0547 243 :PLKKAL 1m0kA 133 :YRFVWW T0547 251 :A 1m0kA 141 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=37026 # 1r5yA.243.166 read from T0547.t2k.many.frag # found chain 1r5yA in training set T0547 243 :PLKKALNEA 1r5yA 167 :RAASSMERS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37027 # 1yb0A.243.99 read from T0547.t2k.many.frag # found chain 1yb0A in template set T0547 243 :PLKKALNEA 1yb0A 100 :RYYKAENNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37028 # 1f1mA.243.16 read from T0547.t2k.many.frag # found chain 1f1mA in training set T0547 243 :PLKKALNEA 1f1mA 54 :AVVLAVKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37029 # 1n2zA.243.109 read from T0547.t2k.many.frag # found chain 1n2zA in template set T0547 243 :PLKKALNEA 1n2zA 131 :KAEQAAQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37030 # 1rtqA.243.40 read from T0547.t2k.many.frag # found chain 1rtqA in training set T0547 243 :PLKKALNEA 1rtqA 41 :SGAQASDWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37031 # 1es9A.243.146 read from T0547.t2k.many.frag # found chain 1es9A in training set T0547 243 :PLKKALNEA 1es9A 147 :PLREKNRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37032 # 1r8gA.243.70 read from T0547.t2k.many.frag # found chain 1r8gA in template set T0547 243 :PLKKALNEA 1r8gA 71 :QAAGQFSAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37033 # 2f2gA.243.171 read from T0547.t2k.many.frag # found chain 2f2gA in template set T0547 243 :PLKKALNEA 2f2gA 172 :GFKQYCSSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37034 # 1kufA.243.29 read from T0547.t2k.many.frag # found chain 1kufA in template set T0547 243 :PLKKALNEA 1kufA 30 :KIRKRVHQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37035 # 1t6uA.243.12 read from T0547.t2k.many.frag # found chain 1t6uA in training set T0547 243 :PLKKALNEA 1t6uA 13 :QARIEAESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37036 # 1ie9A.243.182 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 243 :PLKKALNEA 1ie9A 351 :LIEAIQDRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37037 # 1onwA.243.176 read from T0547.t2k.many.frag # found chain 1onwA in training set T0547 243 :PLKKALNEA 1onwA 177 :HLANMAAES Number of specific fragments extracted= 1 number of extra gaps= 0 total=37038 # 1v7wA.243.284 read from T0547.t2k.many.frag # found chain 1v7wA in training set T0547 243 :PLKKALNEA 1v7wA 285 :NIDAAFAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37039 # 1ug6A.243.356 read from T0547.t2k.many.frag # found chain 1ug6A in training set T0547 243 :PLKKALNEA 1ug6A 357 :ERVAYLEAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=37040 1yw0A expands to /projects/compbio/data/pdb/1yw0.pdb.gz 1yw0A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1yw0A.243.60 read from T0547.t2k.many.frag # adding 1yw0A to template set # found chain 1yw0A in template set T0547 243 :PLKKALNEA 1yw0A 83 :QCRKVLARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37041 # 1zb1A.243.146 read from T0547.t2k.many.frag # found chain 1zb1A in template set T0547 243 :PLKKALNEA 1zb1A 142 :NSIANLTKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37042 # 1r5lA.243.48 read from T0547.t2k.many.frag # found chain 1r5lA in training set T0547 243 :PLKKALNEA 1r5lA 65 :LAWRLLKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37043 # 1ei6A.243.212 read from T0547.t2k.many.frag # found chain 1ei6A in template set T0547 243 :PLKKALNEA 1ei6A 214 :EANAFYAMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37044 # 1tqgA.243.58 read from T0547.t2k.many.frag # found chain 1tqgA in training set T0547 243 :PLKKALNEA 1tqgA 58 :SMAKLCHTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37045 # 1n93X.243.261 read from T0547.t2k.many.frag # found chain 1n93X in training set T0547 243 :PLKKALNEA 1n93X 257 :VVAYEIRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37046 # 1o7qA.243.210 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 243 :PLKKALNEA 1o7qA 290 :QVLNITQEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=37047 # 7odcA.244.207 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 244 :LKKALNEAG 7odcA 208 :FVQAVSDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37048 # 2bk9A.244.57 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 244 :LKKALNEAG 2bk9A 58 :FRAHAGRII Number of specific fragments extracted= 1 number of extra gaps= 0 total=37049 # 1hf8A.244.163 read from T0547.t2k.many.frag # found chain 1hf8A in template set T0547 244 :LKKALNEAG 1hf8A 164 :LLKTVPIIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37050 # 2etsA.244.102 read from T0547.t2k.many.frag # found chain 2etsA in template set T0547 244 :LKKALNEAG 2etsA 91 :FIEKLKSVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37051 # 256bA.244.25 read from T0547.t2k.many.frag # found chain 256bA in training set T0547 244 :LKKALNEAG 256bA 26 :VKDALTKMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37052 # 1r0dA.244.137 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 244 :LKKALNEAG 1r0dA 903 :LIVCSHEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37053 # 1r5yA.244.167 read from T0547.t2k.many.frag # found chain 1r5yA in training set T0547 244 :LKKALNEAG 1r5yA 168 :AASSMERSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37054 # 1m0kA.244.146 read from T0547.t2k.many.frag # found chain 1m0kA in training set Warning: unaligning (T0547)N249 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1m0kA)I140 Warning: unaligning (T0547)E250 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1m0kA)I140 T0547 244 :LKKAL 1m0kA 134 :RFVWW T0547 251 :AG 1m0kA 141 :ST Number of specific fragments extracted= 2 number of extra gaps= 1 total=37056 # 1f1mA.244.17 read from T0547.t2k.many.frag # found chain 1f1mA in training set T0547 244 :LKKALNEAG 1f1mA 55 :VVLAVKEVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37057 # 1kr7A.244.41 read from T0547.t2k.many.frag # found chain 1kr7A in training set T0547 244 :LKKALNEAG 1kr7A 41 :YKTQAGKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37058 # 1yb0A.244.100 read from T0547.t2k.many.frag # found chain 1yb0A in template set T0547 244 :LKKALNEAG 1yb0A 101 :YYKAENNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37059 # 2f2gA.244.172 read from T0547.t2k.many.frag # found chain 2f2gA in template set T0547 244 :LKKALNEAG 2f2gA 173 :FKQYCSSVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37060 # 1rtqA.244.41 read from T0547.t2k.many.frag # found chain 1rtqA in training set T0547 244 :LKKALNEAG 1rtqA 42 :GAQASDWIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37061 # 1ie9A.244.183 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 244 :LKKALNEAG 1ie9A 352 :IEAIQDRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37062 # 1t6uA.244.13 read from T0547.t2k.many.frag # found chain 1t6uA in training set T0547 244 :LKKALNEAG 1t6uA 14 :ARIEAESVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37063 1b5l expands to /projects/compbio/data/pdb/1b5l.pdb.gz 1b5l:Warning: there is no chain 1b5l will retry with 1b5lA # 1b5l.244.6 read from T0547.t2k.many.frag # adding 1b5l to template set # found chain 1b5l in template set T0547 244 :LKKALNEAG 1b5l 7 :LMLDARENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37064 # 1qlwA.244.261 read from T0547.t2k.many.frag # found chain 1qlwA in training set T0547 244 :LKKALNEAG 1qlwA 262 :WAPRLKACH Number of specific fragments extracted= 1 number of extra gaps= 0 total=37065 # 1yviA.244.112 read from T0547.t2k.many.frag # found chain 1yviA in template set T0547 244 :LKKALNEAG 1yviA 113 :CLMALAVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37066 # 1yw0A.244.61 read from T0547.t2k.many.frag # found chain 1yw0A in template set T0547 244 :LKKALNEAG 1yw0A 84 :CRKVLARSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37067 # 1r8gA.244.71 read from T0547.t2k.many.frag # found chain 1r8gA in template set T0547 244 :LKKALNEAG 1r8gA 72 :AAGQFSAMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37068 # 1epuA.244.194 read from T0547.t2k.many.frag # found chain 1epuA in template set T0547 244 :LKKALNEAG 1epuA 195 :NASFAQLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37069 # 1v7wA.244.285 read from T0547.t2k.many.frag # found chain 1v7wA in training set T0547 244 :LKKALNEAG 1v7wA 286 :IDAAFAAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37070 # 1ug6A.244.357 read from T0547.t2k.many.frag # found chain 1ug6A in training set T0547 244 :LKKALNEAG 1ug6A 358 :RVAYLEAHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37071 # 1n2zA.244.110 read from T0547.t2k.many.frag # found chain 1n2zA in template set T0547 244 :LKKALNEAG 1n2zA 132 :AEQAAQSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37072 # 1es9A.244.147 read from T0547.t2k.many.frag # found chain 1es9A in training set T0547 244 :LKKALNEAG 1es9A 148 :LREKNRRVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37073 # 1qkrA.244.68 read from T0547.t2k.many.frag # found chain 1qkrA in training set T0547 244 :LKKALNEAG 1qkrA 947 :LIQCAKDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37074 1kxu expands to /projects/compbio/data/pdb/1kxu.pdb.gz 1kxu:Warning: there is no chain 1kxu will retry with 1kxuA # 1kxu.244.145 read from T0547.t2k.many.frag # adding 1kxu to template set # found chain 1kxu in template set T0547 244 :LKKALNEAG 1kxu 136 :QEKALEQIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37075 1o5hA expands to /projects/compbio/data/pdb/1o5h.pdb.gz 1o5hA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1o5hA.244.84 read from T0547.t2k.many.frag # adding 1o5hA to template set # found chain 1o5hA in template set T0547 244 :LKKALNEAG 1o5hA 73 :LFDLAKKDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37076 # 1kufA.244.30 read from T0547.t2k.many.frag # found chain 1kufA in template set T0547 244 :LKKALNEAG 1kufA 31 :IRKRVHQMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37077 # 1qw9A.244.263 read from T0547.t2k.many.frag # found chain 1qw9A in training set T0547 244 :LKKALNEAG 1qw9A 264 :MDDFIRSVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37078 # 7odcA.245.208 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 245 :KKALNEAGN 7odcA 209 :VQAVSDARC Number of specific fragments extracted= 1 number of extra gaps= 0 total=37079 # 2bk9A.245.58 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 245 :KKALNEAGN 2bk9A 59 :RAHAGRIIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37080 # 2etsA.245.103 read from T0547.t2k.many.frag # found chain 2etsA in template set T0547 245 :KKALNEAGN 2etsA 92 :IEKLKSVQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37081 # 1hf8A.245.164 read from T0547.t2k.many.frag # found chain 1hf8A in template set T0547 245 :KKALNEAGN 1hf8A 165 :LKTVPIIQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37082 # 1m0kA.245.147 read from T0547.t2k.many.frag # found chain 1m0kA in training set Warning: unaligning (T0547)N249 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1m0kA)I140 Warning: unaligning (T0547)E250 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1m0kA)I140 T0547 245 :KKAL 1m0kA 135 :FVWW T0547 251 :AGN 1m0kA 141 :STA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37084 # 1r5yA.245.168 read from T0547.t2k.many.frag # found chain 1r5yA in training set T0547 245 :KKALNEAGN 1r5yA 169 :ASSMERSMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37085 # 256bA.245.26 read from T0547.t2k.many.frag # found chain 256bA in training set T0547 245 :KKALNEAGN 256bA 27 :KDALTKMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37086 # 1r0dA.245.138 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 245 :KKALNEAGN 1r0dA 904 :IVCSHEIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37087 # 1f1mA.245.18 read from T0547.t2k.many.frag # found chain 1f1mA in training set T0547 245 :KKALNEAGN 1f1mA 56 :VLAVKEVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=37088 # 1kr7A.245.42 read from T0547.t2k.many.frag # found chain 1kr7A in training set T0547 245 :KKALNEAGN 1kr7A 42 :KTQAGKTVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37089 # 1qlwA.245.262 read from T0547.t2k.many.frag # found chain 1qlwA in training set T0547 245 :KKALNEAGN 1qlwA 263 :APRLKACHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37090 # 1b5l.245.7 read from T0547.t2k.many.frag # found chain 1b5l in template set T0547 245 :KKALNEAGN 1b5l 8 :MLDARENLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37091 # 1yviA.245.113 read from T0547.t2k.many.frag # found chain 1yviA in template set T0547 245 :KKALNEAGN 1yviA 114 :LMALAVVRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37092 # 1o7qA.245.212 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 245 :KKALNEAGN 1o7qA 292 :LNITQECFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37093 # 2f2gA.245.173 read from T0547.t2k.many.frag # found chain 2f2gA in template set T0547 245 :KKALNEAGN 2f2gA 174 :KQYCSSVKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37094 # 1x91A.245.101 read from T0547.t2k.many.frag # found chain 1x91A in training set T0547 245 :KKALNEAGN 1x91A 98 :NMKVSAALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37095 # 1t6uA.245.14 read from T0547.t2k.many.frag # found chain 1t6uA in training set T0547 245 :KKALNEAGN 1t6uA 15 :RIEAESVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37096 # 1rtqA.245.42 read from T0547.t2k.many.frag # found chain 1rtqA in training set T0547 245 :KKALNEAGN 1rtqA 43 :AQASDWIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37097 # 1yw0A.245.62 read from T0547.t2k.many.frag # found chain 1yw0A in template set Warning: unaligning (T0547)A247 (1yw0A)V87 because G (3-10) conformation "forbidden" or filtered. T0547 245 :KK 1yw0A 85 :RK T0547 248 :LNEAGN 1yw0A 88 :LARSKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=37099 # 1es9A.245.148 read from T0547.t2k.many.frag # found chain 1es9A in training set T0547 245 :KKALNEAGN 1es9A 149 :REKNRRVNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37100 # 1qw9A.245.264 read from T0547.t2k.many.frag # found chain 1qw9A in training set T0547 245 :KKALNEAGN 1qw9A 265 :DDFIRSVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37101 # 1yb0A.245.101 read from T0547.t2k.many.frag # found chain 1yb0A in template set T0547 245 :KKALNEAGN 1yb0A 102 :YKAENNAVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37102 # 1o5hA.245.85 read from T0547.t2k.many.frag # found chain 1o5hA in template set T0547 245 :KKALNEAGN 1o5hA 74 :FDLAKKDME Number of specific fragments extracted= 1 number of extra gaps= 0 total=37103 # 1v7wA.245.286 read from T0547.t2k.many.frag # found chain 1v7wA in training set T0547 245 :KKALNEAGN 1v7wA 287 :DAAFAAIKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37104 # 1kufA.245.31 read from T0547.t2k.many.frag # found chain 1kufA in template set T0547 245 :KKALNEAGN 1kufA 32 :RKRVHQMVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37105 # 1r8gA.245.72 read from T0547.t2k.many.frag # found chain 1r8gA in template set T0547 245 :KKALNEAGN 1r8gA 73 :AGQFSAMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37106 # 1ei6A.245.214 read from T0547.t2k.many.frag # found chain 1ei6A in template set T0547 245 :KKALNEAGN 1ei6A 216 :NAFYAMMDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37107 # 1tqgA.245.60 read from T0547.t2k.many.frag # found chain 1tqgA in training set T0547 245 :KKALNEAGN 1tqgA 60 :AKLCHTLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37108 # 1qkrA.245.69 read from T0547.t2k.many.frag # found chain 1qkrA in training set T0547 245 :KKALNEAGN 1qkrA 948 :IQCAKDIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37109 # 1ie9A.245.184 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 245 :KKALNEAGN 1ie9A 353 :EAIQDRLSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37110 # 2etsA.246.104 read from T0547.t2k.many.frag # found chain 2etsA in template set T0547 246 :KALNEAGNI 2etsA 93 :EKLKSVQYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37111 # 7odcA.246.209 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 246 :KALNEAGNI 7odcA 210 :QAVSDARCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37112 # 2bk9A.246.59 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 246 :KALNEAGNI 2bk9A 60 :AHAGRIIRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37113 # 1qlwA.246.263 read from T0547.t2k.many.frag # found chain 1qlwA in training set T0547 246 :KALNEAGNI 1qlwA 264 :PRLKACHAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37114 # 1r5yA.246.169 read from T0547.t2k.many.frag # found chain 1r5yA in training set T0547 246 :KALNEAGNI 1r5yA 170 :SSMERSMRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=37115 # 1m0kA.246.148 read from T0547.t2k.many.frag # found chain 1m0kA in training set Warning: unaligning (T0547)N249 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1m0kA)I140 Warning: unaligning (T0547)E250 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1m0kA)I140 T0547 246 :KAL 1m0kA 136 :VWW T0547 251 :AGNI 1m0kA 141 :STAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37117 # 1f1mA.246.19 read from T0547.t2k.many.frag # found chain 1f1mA in training set T0547 246 :KALNEAGNI 1f1mA 57 :LAVKEVETL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37118 # 1hf8A.246.165 read from T0547.t2k.many.frag # found chain 1hf8A in template set T0547 246 :KALNEAGNI 1hf8A 166 :KTVPIIQNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37119 # 1o7qA.246.213 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 246 :KALNEAGNI 1o7qA 293 :NITQECFKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37120 # 1r0dA.246.139 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 246 :KALNEAGNI 1r0dA 905 :VCSHEIAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37121 # 1yviA.246.114 read from T0547.t2k.many.frag # found chain 1yviA in template set T0547 246 :KALNEAGNI 1yviA 115 :MALAVVRND Number of specific fragments extracted= 1 number of extra gaps= 0 total=37122 # 1b5l.246.8 read from T0547.t2k.many.frag # found chain 1b5l in template set T0547 246 :KALNEAGNI 1b5l 9 :LDARENLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37123 # 256bA.246.27 read from T0547.t2k.many.frag # found chain 256bA in training set T0547 246 :KALNEAGNI 256bA 28 :DALTKMRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37124 # 1ei6A.246.215 read from T0547.t2k.many.frag # found chain 1ei6A in template set T0547 246 :KALNEAGNI 1ei6A 217 :AFYAMMDSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37125 # 1yb0A.246.102 read from T0547.t2k.many.frag # found chain 1yb0A in template set T0547 246 :KALNEAGNI 1yb0A 103 :KAENNAVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37126 # 2f2gA.246.174 read from T0547.t2k.many.frag # found chain 2f2gA in template set T0547 246 :KALNEAGNI 2f2gA 175 :QYCSSVKNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37127 # 1o5hA.246.86 read from T0547.t2k.many.frag # found chain 1o5hA in template set T0547 246 :KALNEAGNI 1o5hA 75 :DLAKKDMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37128 # 1x91A.246.102 read from T0547.t2k.many.frag # found chain 1x91A in training set T0547 246 :KALNEAGNI 1x91A 99 :MKVSAALDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37129 # 1kr7A.246.43 read from T0547.t2k.many.frag # found chain 1kr7A in training set T0547 246 :KALNEAGNI 1kr7A 43 :TQAGKTVDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37130 # 1qw9A.246.265 read from T0547.t2k.many.frag # found chain 1qw9A in training set T0547 246 :KALNEAGNI 1qw9A 266 :DFIRSVVAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37131 # 1yw0A.246.63 read from T0547.t2k.many.frag # found chain 1yw0A in template set T0547 246 :KALNEAGNI 1yw0A 86 :KVLARSKQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37132 # 1ie9A.246.185 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 246 :KALNEAGNI 1ie9A 354 :AIQDRLSNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37133 2cbiA expands to /projects/compbio/data/pdb/2cbi.pdb.gz 2cbiA:# 2cbiA.246.241 read from T0547.t2k.many.frag # adding 2cbiA to template set # found chain 2cbiA in template set T0547 246 :KALNEAGNI 2cbiA 272 :EDFNHLITK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37134 # 1v7wA.246.287 read from T0547.t2k.many.frag # found chain 1v7wA in training set T0547 246 :KALNEAGNI 1v7wA 288 :AAFAAIKAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=37135 # 1es9A.246.149 read from T0547.t2k.many.frag # found chain 1es9A in training set T0547 246 :KALNEAGNI 1es9A 150 :EKNRRVNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37136 # 1rtqA.246.43 read from T0547.t2k.many.frag # found chain 1rtqA in training set T0547 246 :KALNEAGNI 1rtqA 44 :QASDWIASE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37137 # 1kufA.246.32 read from T0547.t2k.many.frag # found chain 1kufA in template set T0547 246 :KALNEAGNI 1kufA 33 :KRVHQMVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37138 1em2A expands to /projects/compbio/data/pdb/1em2.pdb.gz 1em2A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1em2A.246.24 read from T0547.t2k.many.frag # adding 1em2A to template set # found chain 1em2A in template set T0547 246 :KALNEAGNI 1em2A 240 :RQGKEATAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37139 # 1r8gA.246.73 read from T0547.t2k.many.frag # found chain 1r8gA in template set T0547 246 :KALNEAGNI 1r8gA 74 :GQFSAMQKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37140 # 1qkrA.246.70 read from T0547.t2k.many.frag # found chain 1qkrA in training set T0547 246 :KALNEAGNI 1qkrA 949 :QCAKDIAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37141 # 2bk9A.247.60 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 247 :ALNEAGNIY 2bk9A 61 :HAGRIIRVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37142 # 2etsA.247.105 read from T0547.t2k.many.frag # found chain 2etsA in template set T0547 247 :ALNEAGNIY 2etsA 94 :KLKSVQYDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37143 # 1r5yA.247.170 read from T0547.t2k.many.frag # found chain 1r5yA in training set T0547 247 :ALNEAGNIY 1r5yA 171 :SMERSMRWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37144 # 7odcA.247.210 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 247 :ALNEAGNIY 7odcA 211 :AVSDARCVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37145 # 1b5l.247.9 read from T0547.t2k.many.frag # found chain 1b5l in template set T0547 247 :ALNEAGNIY 1b5l 10 :DARENLKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37146 # 1o7qA.247.214 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 247 :ALNEAGNIY 1o7qA 294 :ITQECFKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37147 # 1f1mA.247.20 read from T0547.t2k.many.frag # found chain 1f1mA in training set T0547 247 :ALNEAGNIY 1f1mA 58 :AVKEVETLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37148 # 1m0kA.247.149 read from T0547.t2k.many.frag # found chain 1m0kA in training set Warning: unaligning (T0547)N249 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1m0kA)I140 Warning: unaligning (T0547)E250 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1m0kA)I140 T0547 247 :AL 1m0kA 137 :WW T0547 251 :AGNIY 1m0kA 141 :STAAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=37150 # 1r0dA.247.140 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 247 :ALNEAGNIY 1r0dA 906 :CSHEIAAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=37151 # 1o5hA.247.87 read from T0547.t2k.many.frag # found chain 1o5hA in template set T0547 247 :ALNEAGNIY 1o5hA 76 :LAKKDMEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37152 # 1x91A.247.103 read from T0547.t2k.many.frag # found chain 1x91A in training set T0547 247 :ALNEAGNIY 1x91A 100 :KVSAALDGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37153 # 1qw9A.247.266 read from T0547.t2k.many.frag # found chain 1qw9A in training set T0547 247 :ALNEAGNIY 1qw9A 267 :FIRSVVAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37154 # 1ei6A.247.216 read from T0547.t2k.many.frag # found chain 1ei6A in template set T0547 247 :ALNEAGNIY 1ei6A 218 :FYAMMDSYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37155 # 1ie9A.247.186 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 247 :ALNEAGNIY 1ie9A 355 :IQDRLSNTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37156 # 1hf8A.247.166 read from T0547.t2k.many.frag # found chain 1hf8A in template set T0547 247 :ALNEAGNIY 1hf8A 167 :TVPIIQNQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37157 # 2f2gA.247.175 read from T0547.t2k.many.frag # found chain 2f2gA in template set T0547 247 :ALNEAGNIY 2f2gA 176 :YCSSVKNIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37158 # 1em2A.247.25 read from T0547.t2k.many.frag # found chain 1em2A in template set T0547 247 :ALNEAGNIY 1em2A 241 :QGKEATAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37159 # 1es9A.247.150 read from T0547.t2k.many.frag # found chain 1es9A in training set T0547 247 :ALNEAGNIY 1es9A 151 :KNRRVNELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37160 # 1yb0A.247.103 read from T0547.t2k.many.frag # found chain 1yb0A in template set T0547 247 :ALNEAGNIY 1yb0A 104 :AENNAVDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37161 # 1kufA.247.33 read from T0547.t2k.many.frag # found chain 1kufA in template set T0547 247 :ALNEAGNIY 1kufA 34 :RVHQMVSNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37162 # 1n2zA.247.113 read from T0547.t2k.many.frag # found chain 1n2zA in template set T0547 247 :ALNEAGNIY 1n2zA 135 :AAQSLLDQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37163 # 1m5wA.247.170 read from T0547.t2k.many.frag # found chain 1m5wA in template set T0547 247 :ALNEAGNIY 1m5wA 171 :ELARIAKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37164 # 1yviA.247.115 read from T0547.t2k.many.frag # found chain 1yviA in template set T0547 247 :ALNEAGNIY 1yviA 116 :ALAVVRNDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37165 # 1qlwA.247.264 read from T0547.t2k.many.frag # found chain 1qlwA in training set T0547 247 :ALNEAGNIY 1qlwA 265 :RLKACHAFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37166 # 2cbiA.247.242 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 247 :ALNEAGNIY 2cbiA 273 :DFNHLITKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37167 # 1yw0A.247.64 read from T0547.t2k.many.frag # found chain 1yw0A in template set T0547 247 :ALNEAGNIY 1yw0A 87 :VLARSKQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37168 # 1kr7A.247.44 read from T0547.t2k.many.frag # found chain 1kr7A in training set T0547 247 :ALNEAGNIY 1kr7A 44 :QAGKTVDYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37169 # 1qkrA.247.71 read from T0547.t2k.many.frag # found chain 1qkrA in training set T0547 247 :ALNEAGNIY 1qkrA 950 :CAKDIAKAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37170 1on3A expands to /projects/compbio/data/pdb/1on3.pdb.gz 1on3A:Skipped atom 210, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 212, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 214, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 216, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 218, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 220, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 222, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 293, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 295, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 297, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 912, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 914, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 916, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 918, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 920, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 3620, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 3622, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 3624, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 3626, because occupancy 0.500 <= existing 0.500 in 1on3A Skipped atom 3628, because occupancy 0.500 <= existing 0.500 in 1on3A # 1on3A.247.152 read from T0547.t2k.many.frag # adding 1on3A to template set # found chain 1on3A in template set T0547 247 :ALNEAGNIY 1on3A 154 :GYGKMFFAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37171 2evrA expands to /projects/compbio/data/pdb/2evr.pdb.gz 2evrA:Skipped atom 8, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 12, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 14, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 16, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 18, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 78, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 80, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 121, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 123, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 125, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 127, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 129, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 131, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 133, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 135, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 151, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 155, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 157, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 159, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 161, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 163, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 179, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 183, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 185, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 187, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 189, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 193, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 195, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 238, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 242, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 244, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 340, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 342, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 344, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 346, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 348, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 350, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 352, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 354, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 356, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 358, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 360, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 362, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 364, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 366, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 368, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 370, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 653, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 657, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 659, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 665, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 669, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 671, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 691, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 695, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 697, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 699, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 701, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 703, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 787, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 789, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 791, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 793, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 795, because occupancy 0.500 <= existing 0.500 in 2evrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 827, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 831, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 833, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 835, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 837, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 839, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 842, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 846, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 848, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 870, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 872, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 874, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 876, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 878, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 880, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 882, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 884, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 886, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 892, because occupancy 0.500 <= existing 0.500 in 2evrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1245, because occupancy 0.400 <= existing 0.600 in 2evrA Skipped atom 1249, because occupancy 0.400 <= existing 0.600 in 2evrA Skipped atom 1251, because occupancy 0.400 <= existing 0.600 in 2evrA Skipped atom 1253, because occupancy 0.400 <= existing 0.600 in 2evrA Skipped atom 1321, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1325, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1327, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1668, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1672, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1674, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1676, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1678, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1680, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1780, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 1784, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 1786, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 1788, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 1790, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 1792, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 1802, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 1806, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 1808, because occupancy 0.500 <= existing 0.500 in 2evrA # 2evrA.247.107 read from T0547.t2k.many.frag # adding 2evrA to template set # found chain 2evrA in template set T0547 247 :ALNEAGNIY 2evrA 96 :LLAEVIAFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37172 # 2etsA.248.106 read from T0547.t2k.many.frag # found chain 2etsA in template set T0547 248 :LNEAGNIYT 2etsA 95 :LKSVQYDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37173 # 2bk9A.248.61 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 248 :LNEAGNIYT 2bk9A 62 :AGRIIRVFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37174 # 7odcA.248.211 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 248 :LNEAGNIYT 7odcA 212 :VSDARCVFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37175 # 1r5yA.248.171 read from T0547.t2k.many.frag # found chain 1r5yA in training set T0547 248 :LNEAGNIYT 1r5yA 172 :MERSMRWAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37176 # 1o5hA.248.88 read from T0547.t2k.many.frag # found chain 1o5hA in template set T0547 248 :LNEAGNIYT 1o5hA 77 :AKKDMEAFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37177 # 1m0kA.248.150 read from T0547.t2k.many.frag # found chain 1m0kA in training set Warning: unaligning (T0547)N249 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1m0kA)I140 Warning: unaligning (T0547)E250 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1m0kA)I140 T0547 248 :L 1m0kA 138 :W T0547 251 :AGNIYT 1m0kA 141 :STAAML Number of specific fragments extracted= 2 number of extra gaps= 1 total=37179 # 1o7qA.248.215 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 248 :LNEAGNIYT 1o7qA 295 :TQECFKGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37180 # 1ei6A.248.217 read from T0547.t2k.many.frag # found chain 1ei6A in template set T0547 248 :LNEAGNIYT 1ei6A 219 :YAMMDSYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37181 # 1f1mA.248.21 read from T0547.t2k.many.frag # found chain 1f1mA in training set T0547 248 :LNEAGNIYT 1f1mA 59 :VKEVETLLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37182 # 1yviA.248.116 read from T0547.t2k.many.frag # found chain 1yviA in template set T0547 248 :LNEAGNIYT 1yviA 117 :LAVVRNDFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37183 # 1b5l.248.10 read from T0547.t2k.many.frag # found chain 1b5l in template set T0547 248 :LNEAGNIYT 1b5l 11 :ARENLKLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37184 # 1qlwA.248.265 read from T0547.t2k.many.frag # found chain 1qlwA in training set T0547 248 :LNEAGNIYT 1qlwA 266 :LKACHAFID Number of specific fragments extracted= 1 number of extra gaps= 0 total=37185 # 1qw9A.248.267 read from T0547.t2k.many.frag # found chain 1qw9A in training set T0547 248 :LNEAGNIYT 1qw9A 268 :IRSVVAIAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37186 # 1yb0A.248.104 read from T0547.t2k.many.frag # found chain 1yb0A in template set T0547 248 :LNEAGNIYT 1yb0A 105 :ENNAVDVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37187 # 1r0dA.248.141 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 248 :LNEAGNIYT 1r0dA 907 :SHEIAASTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37188 # 1em2A.248.26 read from T0547.t2k.many.frag # found chain 1em2A in template set T0547 248 :LNEAGNIYT 1em2A 242 :GKEATAVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37189 # 1ay7B.248.66 read from T0547.t2k.many.frag # found chain 1ay7B in training set Warning: unaligning (T0547)A251 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1ay7B)L71 Warning: unaligning (T0547)G252 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ay7B)L71 T0547 248 :LNE 1ay7B 67 :AES T0547 253 :NIYT 1ay7B 72 :QVFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37191 # 1x91A.248.104 read from T0547.t2k.many.frag # found chain 1x91A in training set T0547 248 :LNEAGNIYT 1x91A 101 :VSAALDGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37192 # 1yw0A.248.65 read from T0547.t2k.many.frag # found chain 1yw0A in template set T0547 248 :LNEAGNIYT 1yw0A 88 :LARSKQVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37193 # 1hf8A.248.167 read from T0547.t2k.many.frag # found chain 1hf8A in template set T0547 248 :LNEAGNIYT 1hf8A 168 :VPIIQNQMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37194 # 1m5wA.248.171 read from T0547.t2k.many.frag # found chain 1m5wA in template set T0547 248 :LNEAGNIYT 1m5wA 172 :LARIAKAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37195 # 2cbiA.248.243 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 248 :LNEAGNIYT 2cbiA 274 :FNHLITKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37196 # 2f2gA.248.176 read from T0547.t2k.many.frag # found chain 2f2gA in template set T0547 248 :LNEAGNIYT 2f2gA 177 :CSSVKNIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37197 # 1qkrA.248.72 read from T0547.t2k.many.frag # found chain 1qkrA in training set T0547 248 :LNEAGNIYT 1qkrA 951 :AKDIAKASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37198 # 1ie9A.248.187 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 248 :LNEAGNIYT 1ie9A 356 :QDRLSNTLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37199 # 1kr7A.248.45 read from T0547.t2k.many.frag # found chain 1kr7A in training set T0547 248 :LNEAGNIYT 1kr7A 45 :AGKTVDYIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37200 # 1kufA.248.34 read from T0547.t2k.many.frag # found chain 1kufA in template set T0547 248 :LNEAGNIYT 1kufA 35 :VHQMVSNIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37201 # 1n2zA.248.114 read from T0547.t2k.many.frag # found chain 1n2zA in template set T0547 248 :LNEAGNIYT 1n2zA 136 :AQSLLDQYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37202 # 2evrA.248.108 read from T0547.t2k.many.frag # found chain 2evrA in template set T0547 248 :LNEAGNIYT 2evrA 97 :LAEVIAFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37203 # 1es9A.248.151 read from T0547.t2k.many.frag # found chain 1es9A in training set T0547 248 :LNEAGNIYT 1es9A 152 :NRRVNELVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37204 # 2bk9A.249.62 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 249 :NEAGNIYTE 2bk9A 63 :GRIIRVFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37205 # 1o5hA.249.89 read from T0547.t2k.many.frag # found chain 1o5hA in template set T0547 249 :NEAGNIYTE 1o5hA 78 :KKDMEAFEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37206 # 1b5l.249.11 read from T0547.t2k.many.frag # found chain 1b5l in template set T0547 249 :NEAGNIYTE 1b5l 12 :RENLKLLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37207 # 1r5yA.249.172 read from T0547.t2k.many.frag # found chain 1r5yA in training set T0547 249 :NEAGNIYTE 1r5yA 173 :ERSMRWAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37208 # 1qw9A.249.268 read from T0547.t2k.many.frag # found chain 1qw9A in training set T0547 249 :NEAGNIYTE 1qw9A 269 :RSVVAIADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37209 # 7odcA.249.212 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 249 :NEAGNIYTE 7odcA 213 :SDARCVFDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37210 # 1ei6A.249.218 read from T0547.t2k.many.frag # found chain 1ei6A in template set T0547 249 :NEAGNIYTE 1ei6A 220 :AMMDSYFKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37211 # 1ay7B.249.67 read from T0547.t2k.many.frag # found chain 1ay7B in training set Warning: unaligning (T0547)A251 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1ay7B)L71 Warning: unaligning (T0547)G252 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ay7B)L71 T0547 249 :NE 1ay7B 68 :ES T0547 253 :NIYTE 1ay7B 72 :QVFRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=37213 # 1yw0A.249.66 read from T0547.t2k.many.frag # found chain 1yw0A in template set T0547 249 :NEAGNIYTE 1yw0A 89 :ARSKQVLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37214 # 1f1mA.249.22 read from T0547.t2k.many.frag # found chain 1f1mA in training set T0547 249 :NEAGNIYTE 1f1mA 60 :KEVETLLTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37215 # 1yb0A.249.105 read from T0547.t2k.many.frag # found chain 1yb0A in template set T0547 249 :NEAGNIYTE 1yb0A 106 :NNAVDVVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37216 # 1qlwA.249.266 read from T0547.t2k.many.frag # found chain 1qlwA in training set T0547 249 :NEAGNIYTE 1qlwA 267 :KACHAFIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37217 # 1o7qA.249.216 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 249 :NEAGNIYTE 1o7qA 296 :QECFKGILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37218 # 1hf8A.249.168 read from T0547.t2k.many.frag # found chain 1hf8A in template set T0547 249 :NEAGNIYTE 1hf8A 169 :PIIQNQMDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37219 # 1yviA.249.117 read from T0547.t2k.many.frag # found chain 1yviA in template set T0547 249 :NEAGNIYTE 1yviA 118 :AVVRNDFYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37220 # 1r0dA.249.142 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 249 :NEAGNIYTE 1r0dA 908 :HEIAASTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37221 # 1m0kA.249.151 read from T0547.t2k.many.frag # found chain 1m0kA in training set Warning: unaligning (T0547)N249 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1m0kA)I140 Warning: unaligning (T0547)E250 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1m0kA)I140 T0547 251 :AGNIYTE 1m0kA 141 :STAAMLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=37222 # 1m5wA.249.172 read from T0547.t2k.many.frag # found chain 1m5wA in template set T0547 249 :NEAGNIYTE 1m5wA 173 :ARIAKAATF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37223 # 2f2gA.249.177 read from T0547.t2k.many.frag # found chain 2f2gA in template set T0547 249 :NEAGNIYTE 2f2gA 178 :SSVKNIAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=37224 # 1x91A.249.105 read from T0547.t2k.many.frag # found chain 1x91A in training set T0547 249 :NEAGNIYTE 1x91A 102 :SAALDGADT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37225 # 1em2A.249.27 read from T0547.t2k.many.frag # found chain 1em2A in template set T0547 249 :NEAGNIYTE 1em2A 243 :KEATAVVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37226 # 2etsA.249.107 read from T0547.t2k.many.frag # found chain 2etsA in template set T0547 249 :NEAGNIYTE 2etsA 96 :KSVQYDLQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37227 # 1ie9A.249.188 read from T0547.t2k.many.frag # found chain 1ie9A in training set T0547 249 :NEAGNIYTE 1ie9A 357 :DRLSNTLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37228 # 2cbiA.249.244 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 249 :NEAGNIYTE 2cbiA 275 :NHLITKAES Number of specific fragments extracted= 1 number of extra gaps= 0 total=37229 1sziA expands to /projects/compbio/data/pdb/1szi.pdb.gz 1sziA:# 1sziA.249.173 read from T0547.t2k.many.frag # adding 1sziA to template set # found chain 1sziA in template set T0547 249 :NEAGNIYTE 1sziA 364 :QQARSQVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=37230 # 1gtvA.249.172 read from T0547.t2k.many.frag # found chain 1gtvA in training set Warning: unaligning (T0547)G252 (1gtvA)G176 because H (helix) conformation "forbidden" or filtered. T0547 249 :NEA 1gtvA 173 :QRT T0547 253 :NIYTE 1gtvA 177 :AVYAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=37232 # 2evrA.249.109 read from T0547.t2k.many.frag # found chain 2evrA in template set T0547 249 :NEAGNIYTE 2evrA 98 :AEVIAFTQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37233 # 1xmxA.249.188 read from T0547.t2k.many.frag # found chain 1xmxA in template set T0547 249 :NEAGNIYTE 1xmxA 187 :ATLNYLATT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37234 # 1n2zA.249.115 read from T0547.t2k.many.frag # found chain 1n2zA in template set T0547 249 :NEAGNIYTE 1n2zA 137 :QSLLDQYAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37235 # 1e19A.249.30 read from T0547.t2k.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)I254 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1e19A)I37 Warning: unaligning (T0547)Y255 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1e19A)I37 T0547 249 :NEAGN 1e19A 31 :RKTAR T0547 256 :TE 1e19A 38 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=37237 # 2bk9A.250.63 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 250 :EAGNIYTEL 2bk9A 64 :RIIRVFDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=37238 # 1b5l.250.12 read from T0547.t2k.many.frag # found chain 1b5l in template set T0547 250 :EAGNIYTEL 1b5l 13 :ENLKLLDRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37239 # 1qlwA.250.267 read from T0547.t2k.many.frag # found chain 1qlwA in training set T0547 250 :EAGNIYTEL 1qlwA 268 :ACHAFIDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37240 # 1o7qA.250.217 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 250 :EAGNIYTEL 1o7qA 297 :ECFKGILKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37241 # 7odcA.250.213 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 250 :EAGNIYTEL 7odcA 214 :DARCVFDMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37242 # 1ei6A.250.219 read from T0547.t2k.many.frag # found chain 1ei6A in template set T0547 250 :EAGNIYTEL 1ei6A 221 :MMDSYFKRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37243 # 1ay7B.250.68 read from T0547.t2k.many.frag # found chain 1ay7B in training set Warning: unaligning (T0547)A251 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1ay7B)L71 Warning: unaligning (T0547)G252 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ay7B)L71 T0547 250 :E 1ay7B 69 :S T0547 253 :NIYTEL 1ay7B 72 :QVFREA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37245 # 1qw9A.250.269 read from T0547.t2k.many.frag # found chain 1qw9A in training set T0547 250 :EAGNIYTEL 1qw9A 270 :SVVAIADYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37246 # 1o5hA.250.90 read from T0547.t2k.many.frag # found chain 1o5hA in template set T0547 250 :EAGNIYTEL 1o5hA 79 :KDMEAFEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37247 # 1yviA.250.118 read from T0547.t2k.many.frag # found chain 1yviA in template set T0547 250 :EAGNIYTEL 1yviA 119 :VVRNDFYDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37248 # 1m5wA.250.173 read from T0547.t2k.many.frag # found chain 1m5wA in template set T0547 250 :EAGNIYTEL 1m5wA 174 :RIAKAATFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37249 # 1r5yA.250.173 read from T0547.t2k.many.frag # found chain 1r5yA in training set T0547 250 :EAGNIYTEL 1r5yA 174 :RSMRWAKRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37250 # 1yb0A.250.106 read from T0547.t2k.many.frag # found chain 1yb0A in template set T0547 250 :EAGNIYTEL 1yb0A 107 :NAVDVVRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37251 # 2cbiA.250.245 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 250 :EAGNIYTEL 2cbiA 276 :HLITKAESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37252 # 1x91A.250.106 read from T0547.t2k.many.frag # found chain 1x91A in training set T0547 250 :EAGNIYTEL 1x91A 103 :AALDGADTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=37253 # 1r0dA.250.143 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 250 :EAGNIYTEL 1r0dA 909 :EIAASTAQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37254 # 1f1mA.250.23 read from T0547.t2k.many.frag # found chain 1f1mA in training set T0547 250 :EAGNIYTEL 1f1mA 61 :EVETLLTSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37255 # 2etsA.250.108 read from T0547.t2k.many.frag # found chain 2etsA in template set T0547 250 :EAGNIYTEL 2etsA 97 :SVQYDLQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37256 # 1yw0A.250.67 read from T0547.t2k.many.frag # found chain 1yw0A in template set T0547 250 :EAGNIYTEL 1yw0A 90 :RSKQVLRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37257 # 1m0kA.250.152 read from T0547.t2k.many.frag # found chain 1m0kA in training set Warning: unaligning (T0547)E250 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1m0kA)I140 T0547 251 :AGNIYTEL 1m0kA 141 :STAAMLYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=37258 # 1em2A.250.28 read from T0547.t2k.many.frag # found chain 1em2A in template set T0547 250 :EAGNIYTEL 1em2A 244 :EATAVVDQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37259 # 1hf8A.250.169 read from T0547.t2k.many.frag # found chain 1hf8A in template set T0547 250 :EAGNIYTEL 1hf8A 170 :IIQNQMDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37260 # 1otsA.250.271 read from T0547.t2k.many.frag # found chain 1otsA in template set T0547 250 :EAGNIYTEL 1otsA 272 :WVLGMQDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37261 # 1v7wA.250.291 read from T0547.t2k.many.frag # found chain 1v7wA in training set T0547 250 :EAGNIYTEL 1v7wA 292 :AIKAHWDER Number of specific fragments extracted= 1 number of extra gaps= 0 total=37262 # 1rylA.250.145 read from T0547.t2k.many.frag # found chain 1rylA in training set T0547 250 :EAGNIYTEL 1rylA 146 :KLISAYRRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37263 # 1y42X.250.140 read from T0547.t2k.many.frag # found chain 1y42X in template set T0547 250 :EAGNIYTEL 1y42X 172 :KLWENVDTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37264 1nnwA expands to /projects/compbio/data/pdb/1nnw.pdb.gz 1nnwA:# 1nnwA.250.18 read from T0547.t2k.many.frag # adding 1nnwA to template set # found chain 1nnwA in template set T0547 250 :EAGNIYTEL 1nnwA 19 :AALSRIEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37265 1io1A expands to /projects/compbio/data/pdb/1io1.pdb.gz 1io1A:# 1io1A.250.61 read from T0547.t2k.many.frag # adding 1io1A to template set # found chain 1io1A in template set T0547 250 :EAGNIYTEL 1io1A 114 :EITQRLNEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37266 # 2evrA.250.110 read from T0547.t2k.many.frag # found chain 2evrA in template set T0547 250 :EAGNIYTEL 2evrA 99 :EVIAFTQKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37267 # 1sziA.250.174 read from T0547.t2k.many.frag # found chain 1sziA in template set T0547 250 :EAGNIYTEL 1sziA 365 :QARSQVNDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37268 # 1b5l.251.13 read from T0547.t2k.many.frag # found chain 1b5l in template set T0547 251 :AGNIYTELR 1b5l 14 :NLKLLDRMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37269 # 1qlwA.251.268 read from T0547.t2k.many.frag # found chain 1qlwA in training set T0547 251 :AGNIYTELR 1qlwA 269 :CHAFIDALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37270 # 7odcA.251.214 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 251 :AGNIYTELR 7odcA 215 :ARCVFDMAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37271 # 2bk9A.251.64 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 251 :AGNIYTELR 2bk9A 65 :IIRVFDESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37272 # 1ay7B.251.69 read from T0547.t2k.many.frag # found chain 1ay7B in training set Warning: unaligning (T0547)A251 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1ay7B)L71 Warning: unaligning (T0547)G252 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ay7B)L71 T0547 253 :NIYTELR 1ay7B 72 :QVFREAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=37273 # 1ei6A.251.220 read from T0547.t2k.many.frag # found chain 1ei6A in template set T0547 251 :AGNIYTELR 1ei6A 222 :MDSYFKRYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=37274 # 1o7qA.251.218 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 251 :AGNIYTELR 1o7qA 298 :CFKGILKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37275 # 1qw9A.251.270 read from T0547.t2k.many.frag # found chain 1qw9A in training set T0547 251 :AGNIYTELR 1qw9A 271 :VVAIADYVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37276 # 2cbiA.251.246 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 251 :AGNIYTELR 2cbiA 277 :LITKAESLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37277 # 1yb0A.251.107 read from T0547.t2k.many.frag # found chain 1yb0A in template set T0547 251 :AGNIYTELR 1yb0A 108 :AVDVVRQLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37278 # 1m5wA.251.174 read from T0547.t2k.many.frag # found chain 1m5wA in template set T0547 251 :AGNIYTELR 1m5wA 175 :IAKAATFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37279 # 1r5yA.251.174 read from T0547.t2k.many.frag # found chain 1r5yA in training set T0547 251 :AGNIYTELR 1r5yA 175 :SMRWAKRSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37280 # 1x91A.251.107 read from T0547.t2k.many.frag # found chain 1x91A in training set T0547 251 :AGNIYTELR 1x91A 104 :ALDGADTCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37281 # 1f1mA.251.24 read from T0547.t2k.many.frag # found chain 1f1mA in training set T0547 251 :AGNIYTELR 1f1mA 62 :VETLLTSID Number of specific fragments extracted= 1 number of extra gaps= 0 total=37282 # 1o5hA.251.91 read from T0547.t2k.many.frag # found chain 1o5hA in template set T0547 251 :AGNIYTELR 1o5hA 80 :DMEAFEKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37283 # 1u8xX.251.150 read from T0547.t2k.many.frag # found chain 1u8xX in template set T0547 251 :AGNIYTELR 1u8xX 128 :VLEILDYME Number of specific fragments extracted= 1 number of extra gaps= 0 total=37284 # 1yviA.251.119 read from T0547.t2k.many.frag # found chain 1yviA in template set T0547 251 :AGNIYTELR 1yviA 120 :VRNDFYDLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37285 # 1yw0A.251.68 read from T0547.t2k.many.frag # found chain 1yw0A in template set T0547 251 :AGNIYTELR 1yw0A 91 :SKQVLRQLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37286 # 1otsA.251.272 read from T0547.t2k.many.frag # found chain 1otsA in template set T0547 251 :AGNIYTELR 1otsA 273 :VLGMQDLLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=37287 # 1hf8A.251.170 read from T0547.t2k.many.frag # found chain 1hf8A in template set T0547 251 :AGNIYTELR 1hf8A 171 :IQNQMDALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37288 # 1zy9A.251.320 read from T0547.t2k.many.frag # found chain 1zy9A in template set T0547 251 :AGNIYTELR 1zy9A 309 :LFDLFSSLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37289 # 1v7wA.251.292 read from T0547.t2k.many.frag # found chain 1v7wA in training set T0547 251 :AGNIYTELR 1v7wA 293 :IKAHWDERC Number of specific fragments extracted= 1 number of extra gaps= 0 total=37290 # 1y42X.251.141 read from T0547.t2k.many.frag # found chain 1y42X in template set T0547 251 :AGNIYTELR 1y42X 173 :LWENVDTQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37291 # 1rylA.251.146 read from T0547.t2k.many.frag # found chain 1rylA in training set T0547 251 :AGNIYTELR 1rylA 147 :LISAYRRML Number of specific fragments extracted= 1 number of extra gaps= 0 total=37292 # 1evlA.251.158 read from T0547.t2k.many.frag # found chain 1evlA in training set T0547 251 :AGNIYTELR 1evlA 400 :CIRLVYDMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37293 # 2etsA.251.109 read from T0547.t2k.many.frag # found chain 2etsA in template set T0547 251 :AGNIYTELR 2etsA 98 :VQYDLQNIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37294 # 1gtvA.251.174 read from T0547.t2k.many.frag # found chain 1gtvA in training set T0547 251 :AGNIYTELR 1gtvA 175 :TGAVYAELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37295 # 1r0dA.251.144 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 251 :AGNIYTELR 1r0dA 910 :IAASTAQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37296 # 1sziA.251.175 read from T0547.t2k.many.frag # found chain 1sziA in template set T0547 251 :AGNIYTELR 1sziA 366 :ARSQVNDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37297 # 1ga6A.251.149 read from T0547.t2k.many.frag # found chain 1ga6A in training set T0547 251 :AGNIYTELR 1ga6A 150 :EDRIFATAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37298 # 1o7qA.252.219 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 252 :GNIYTELRK 1o7qA 299 :FKGILKDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37299 # 2bk9A.252.65 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 252 :GNIYTELRK 2bk9A 66 :IRVFDESIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37300 # 1b5l.252.14 read from T0547.t2k.many.frag # found chain 1b5l in template set T0547 252 :GNIYTELRK 1b5l 15 :LKLLDRMNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37301 # 1qlwA.252.269 read from T0547.t2k.many.frag # found chain 1qlwA in training set T0547 252 :GNIYTELRK 1qlwA 270 :HAFIDALNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37302 # 1ay7B.252.70 read from T0547.t2k.many.frag # found chain 1ay7B in training set Warning: unaligning (T0547)G252 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ay7B)L71 T0547 253 :NIYTELRK 1ay7B 72 :QVFREAKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=37303 # 1ei6A.252.221 read from T0547.t2k.many.frag # found chain 1ei6A in template set T0547 252 :GNIYTELRK 1ei6A 223 :DSYFKRYHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37304 # 7odcA.252.215 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 252 :GNIYTELRK 7odcA 216 :RCVFDMATE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37305 # 2cbiA.252.247 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 252 :GNIYTELRK 2cbiA 278 :ITKAESLYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37306 # 1m5wA.252.175 read from T0547.t2k.many.frag # found chain 1m5wA in template set T0547 252 :GNIYTELRK 1m5wA 176 :AKAATFAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37307 # 1x91A.252.108 read from T0547.t2k.many.frag # found chain 1x91A in training set T0547 252 :GNIYTELRK 1x91A 105 :LDGADTCLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37308 # 1yb0A.252.108 read from T0547.t2k.many.frag # found chain 1yb0A in template set T0547 252 :GNIYTELRK 1yb0A 109 :VDVVRQLMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37309 # 1kufA.252.38 read from T0547.t2k.many.frag # found chain 1kufA in template set T0547 252 :GNIYTELRK 1kufA 39 :VSNINEMCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37310 # 1qw9A.252.271 read from T0547.t2k.many.frag # found chain 1qw9A in training set T0547 252 :GNIYTELRK 1qw9A 272 :VAIADYVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37311 # 1v7wA.252.293 read from T0547.t2k.many.frag # found chain 1v7wA in training set T0547 252 :GNIYTELRK 1v7wA 294 :KAHWDERCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37312 # 1r0dA.252.145 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 252 :GNIYTELRK 1r0dA 911 :AASTAQLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37313 # 1f1mA.252.25 read from T0547.t2k.many.frag # found chain 1f1mA in training set T0547 252 :GNIYTELRK 1f1mA 63 :ETLLTSIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37314 # 1zy9A.252.321 read from T0547.t2k.many.frag # found chain 1zy9A in template set T0547 252 :GNIYTELRK 1zy9A 310 :FDLFSSLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37315 # 1yw0A.252.69 read from T0547.t2k.many.frag # found chain 1yw0A in template set T0547 252 :GNIYTELRK 1yw0A 92 :KQVLRQLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37316 # 1sziA.252.176 read from T0547.t2k.many.frag # found chain 1sziA in template set T0547 252 :GNIYTELRK 1sziA 367 :RSQVNDLQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37317 # 1r5yA.252.175 read from T0547.t2k.many.frag # found chain 1r5yA in training set T0547 252 :GNIYTELRK 1r5yA 176 :MRWAKRSRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37318 # 1em2A.252.30 read from T0547.t2k.many.frag # found chain 1em2A in template set T0547 252 :GNIYTELRK 1em2A 246 :TAVVDQILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37319 # 1o5hA.252.92 read from T0547.t2k.many.frag # found chain 1o5hA in template set T0547 252 :GNIYTELRK 1o5hA 81 :MEAFEKVMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37320 # 1yviA.252.120 read from T0547.t2k.many.frag # found chain 1yviA in template set T0547 252 :GNIYTELRK 1yviA 121 :RNDFYDLRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37321 1orjA expands to /projects/compbio/data/pdb/1orj.pdb.gz 1orjA:# 1orjA.252.29 read from T0547.t2k.many.frag # adding 1orjA to template set # found chain 1orjA in template set T0547 252 :GNIYTELRK 1orjA 1030 :IECLERAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37322 # 1nnwA.252.20 read from T0547.t2k.many.frag # found chain 1nnwA in template set T0547 252 :GNIYTELRK 1nnwA 21 :LSRIEEMRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37323 # 1ug6A.252.365 read from T0547.t2k.many.frag # found chain 1ug6A in training set T0547 252 :GNIYTELRK 1ug6A 366 :VEAALRARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37324 # 1evlA.252.159 read from T0547.t2k.many.frag # found chain 1evlA in training set T0547 252 :GNIYTELRK 1evlA 401 :IRLVYDMYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37325 # 1otsA.252.273 read from T0547.t2k.many.frag # found chain 1otsA in template set T0547 252 :GNIYTELRK 1otsA 274 :LGMQDLLHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37326 # 1e4cP.252.10 read from T0547.t2k.many.frag # found chain 1e4cP in training set T0547 252 :GNIYTELRK 1e4cP 11 :IDTCLEMTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37327 # 2cx6A.252.69 read from T0547.t2k.many.frag # found chain 2cx6A in template set T0547 252 :GNIYTELRK 2cx6A 70 :ILLFDEAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37328 # 1qlwA.253.270 read from T0547.t2k.many.frag # found chain 1qlwA in training set T0547 253 :NIYTELRKM 1qlwA 271 :AFIDALNAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37329 # 2bk9A.253.66 read from T0547.t2k.many.frag # found chain 2bk9A in training set T0547 253 :NIYTELRKM 2bk9A 67 :RVFDESIQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37330 # 1b5l.253.15 read from T0547.t2k.many.frag # found chain 1b5l in template set T0547 253 :NIYTELRKM 1b5l 16 :KLLDRMNRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37331 # 1o7qA.253.220 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 253 :NIYTELRKM 1o7qA 300 :KGILKDKKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37332 # 7odcA.253.216 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 253 :NIYTELRKM 7odcA 217 :CVFDMATEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37333 # 1ei6A.253.222 read from T0547.t2k.many.frag # found chain 1ei6A in template set Warning: unaligning (T0547)M261 (1ei6A)Q232 because G (3-10) conformation "forbidden" or filtered. T0547 253 :NIYTELRK 1ei6A 224 :SYFKRYHE Number of specific fragments extracted= 1 number of extra gaps= 1 total=37334 # 1ay7B.253.71 read from T0547.t2k.many.frag # found chain 1ay7B in training set T0547 253 :NIYTELRKM 1ay7B 72 :QVFREAKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37335 # 2cbiA.253.248 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 253 :NIYTELRKM 2cbiA 279 :TKAESLYDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37336 # 1yb0A.253.109 read from T0547.t2k.many.frag # found chain 1yb0A in template set T0547 253 :NIYTELRKM 1yb0A 110 :DVVRQLMSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37337 # 1zy9A.253.322 read from T0547.t2k.many.frag # found chain 1zy9A in template set T0547 253 :NIYTELRKM 1zy9A 311 :DLFSSLRKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=37338 # 1m5wA.253.176 read from T0547.t2k.many.frag # found chain 1m5wA in template set T0547 253 :NIYTELRKM 1m5wA 177 :KAATFAASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37339 # 1x91A.253.109 read from T0547.t2k.many.frag # found chain 1x91A in training set T0547 253 :NIYTELRKM 1x91A 106 :DGADTCLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37340 # 1kufA.253.39 read from T0547.t2k.many.frag # found chain 1kufA in template set Warning: unaligning (T0547)R259 (1kufA)C46 because G (3-10) conformation "forbidden" or filtered. T0547 253 :NIYTEL 1kufA 40 :SNINEM T0547 260 :KM 1kufA 47 :RP Number of specific fragments extracted= 2 number of extra gaps= 1 total=37342 # 1v7wA.253.294 read from T0547.t2k.many.frag # found chain 1v7wA in training set T0547 253 :NIYTELRKM 1v7wA 295 :AHWDERCAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37343 # 1r0dA.253.146 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 253 :NIYTELRKM 1r0dA 912 :ASTAQLVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37344 # 1sziA.253.177 read from T0547.t2k.many.frag # found chain 1sziA in template set T0547 253 :NIYTELRKM 1sziA 368 :SQVNDLQAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37345 # 1e4cP.253.11 read from T0547.t2k.many.frag # found chain 1e4cP in training set T0547 253 :NIYTELRKM 1e4cP 12 :DTCLEMTRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37346 # 1o5hA.253.93 read from T0547.t2k.many.frag # found chain 1o5hA in template set T0547 253 :NIYTELRKM 1o5hA 82 :EAFEKVMKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37347 # 1f1mA.253.26 read from T0547.t2k.many.frag # found chain 1f1mA in training set T0547 253 :NIYTELRKM 1f1mA 64 :TLLTSIDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37348 # 1yw0A.253.70 read from T0547.t2k.many.frag # found chain 1yw0A in template set T0547 253 :NIYTELRKM 1yw0A 93 :QVLRQLTEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37349 # 1r5yA.253.176 read from T0547.t2k.many.frag # found chain 1r5yA in training set T0547 253 :NIYTELRKM 1r5yA 177 :RWAKRSRDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37350 # 1evlA.253.160 read from T0547.t2k.many.frag # found chain 1evlA in training set T0547 253 :NIYTELRKM 1evlA 402 :RLVYDMYST Number of specific fragments extracted= 1 number of extra gaps= 0 total=37351 # 1wddA.253.222 read from T0547.t2k.many.frag # found chain 1wddA in training set T0547 253 :NIYTELRKM 1wddA 223 :EAIYKSQAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37352 # 1otsA.253.274 read from T0547.t2k.many.frag # found chain 1otsA in template set T0547 253 :NIYTELRKM 1otsA 275 :GMQDLLHRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37353 # 1q7zA.253.343 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 253 :NIYTELRKM 1q7zA 344 :KEAKTQVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37354 # 2etsA.253.111 read from T0547.t2k.many.frag # found chain 2etsA in template set T0547 253 :NIYTELRKM 2etsA 100 :YDLQNILDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37355 # 1ki9A.253.156 read from T0547.t2k.many.frag # found chain 1ki9A in template set T0547 253 :NIYTELRKM 1ki9A 157 :AAAMTYGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37356 # 1kxu.253.154 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 253 :NIYTELRKM 1kxu 145 :EYELLLIQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37357 # 1io1A.253.64 read from T0547.t2k.many.frag # found chain 1io1A in template set T0547 253 :NIYTELRKM 1io1A 117 :QRLNEIDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37358 # 1wkqA.253.19 read from T0547.t2k.many.frag # found chain 1wkqA in training set T0547 253 :NIYTELRKM 1wkqA 12 :TLACEGVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37359 # 2bk9A.254.67 read from T0547.t2k.many.frag # found chain 2bk9A in training set Warning: unaligning (T0547)G262 (2bk9A)L76 because P (beta_P) conformation "forbidden" or filtered. T0547 254 :IYTELRKM 2bk9A 68 :VFDESIQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=37360 # 1yb0A.254.110 read from T0547.t2k.many.frag # found chain 1yb0A in template set Warning: unaligning (T0547)G262 (1yb0A)Y119 because G (3-10) conformation "forbidden" or filtered. T0547 254 :IYTELRKM 1yb0A 111 :VVRQLMSM Number of specific fragments extracted= 1 number of extra gaps= 1 total=37361 # 1kxu.254.155 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 254 :IYTELRKMG 1kxu 146 :YELLLIQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37362 # 1b5l.254.16 read from T0547.t2k.many.frag # found chain 1b5l in template set Warning: unaligning (T0547)M261 (1b5l)L24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G262 (1b5l)S25 because P (beta_P) conformation "forbidden" or filtered. T0547 254 :IYTELRK 1b5l 17 :LLDRMNR Number of specific fragments extracted= 1 number of extra gaps= 1 total=37363 # 1zy9A.254.323 read from T0547.t2k.many.frag # found chain 1zy9A in template set T0547 254 :IYTELRKMG 1zy9A 312 :LFSSLRKMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37364 # 1ei6A.254.223 read from T0547.t2k.many.frag # found chain 1ei6A in template set T0547 254 :IYTELRKMG 1ei6A 225 :YFKRYHEQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37365 # 1kufA.254.40 read from T0547.t2k.many.frag # found chain 1kufA in template set T0547 254 :IYTELRKMG 1kufA 41 :NINEMCRPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37366 # 1evlA.254.161 read from T0547.t2k.many.frag # found chain 1evlA in training set T0547 254 :IYTELRKMG 1evlA 403 :LVYDMYSTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37367 # 1r0dA.254.147 read from T0547.t2k.many.frag # found chain 1r0dA in template set T0547 254 :IYTELRKMG 1r0dA 913 :STAQLVAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37368 # 1qlwA.254.271 read from T0547.t2k.many.frag # found chain 1qlwA in training set T0547 254 :IYTELRKMG 1qlwA 272 :FIDALNAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37369 # 2cbiA.254.249 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 254 :IYTELRKMG 2cbiA 280 :KAESLYDMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37370 # 1ay7B.254.72 read from T0547.t2k.many.frag # found chain 1ay7B in training set T0547 254 :IYTELRKMG 1ay7B 73 :VFREAKAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37371 # 2cx6A.254.71 read from T0547.t2k.many.frag # found chain 2cx6A in template set Warning: unaligning (T0547)G262 (2cx6A)L80 because G (3-10) conformation "forbidden" or filtered. T0547 254 :IYTELRKM 2cx6A 72 :LFDEAEEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=37372 # 1sziA.254.178 read from T0547.t2k.many.frag # found chain 1sziA in template set T0547 254 :IYTELRKMG 1sziA 369 :QVNDLQATF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37373 1fvpA expands to /projects/compbio/data/pdb/1fvp.pdb.gz 1fvpA:# 1fvpA.254.182 read from T0547.t2k.many.frag # adding 1fvpA to template set # found chain 1fvpA in template set T0547 254 :IYTELRKMG 1fvpA 183 :YVANLAGKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37374 # 1m5wA.254.177 read from T0547.t2k.many.frag # found chain 1m5wA in template set T0547 254 :IYTELRKMG 1m5wA 178 :AATFAASLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37375 # 1e4cP.254.12 read from T0547.t2k.many.frag # found chain 1e4cP in training set T0547 254 :IYTELRKMG 1e4cP 13 :TCLEMTRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37376 # 1q7zA.254.344 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 254 :IYTELRKMG 1q7zA 345 :EAKTQVEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37377 # 1wddA.254.223 read from T0547.t2k.many.frag # found chain 1wddA in training set T0547 254 :IYTELRKMG 1wddA 224 :AIYKSQAET Number of specific fragments extracted= 1 number of extra gaps= 0 total=37378 # 1o7qA.254.221 read from T0547.t2k.many.frag # found chain 1o7qA in training set T0547 254 :IYTELRKMG 1o7qA 301 :GILKDKKND Number of specific fragments extracted= 1 number of extra gaps= 0 total=37379 # 1otsA.254.275 read from T0547.t2k.many.frag # found chain 1otsA in template set Warning: unaligning (T0547)G262 (1otsA)H284 because G (3-10) conformation "forbidden" or filtered. T0547 254 :IYTELRKM 1otsA 276 :MQDLLHRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=37380 # 1ga6A.254.152 read from T0547.t2k.many.frag # found chain 1ga6A in training set T0547 254 :IYTELRKMG 1ga6A 153 :IFATAAAQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37381 # 1x91A.254.110 read from T0547.t2k.many.frag # found chain 1x91A in training set T0547 254 :IYTELRKMG 1x91A 107 :GADTCLDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37382 # 1v7zA.254.101 read from T0547.t2k.many.frag # found chain 1v7zA in training set T0547 254 :IYTELRKMG 1v7zA 102 :IIRELARHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37383 1musA expands to /projects/compbio/data/pdb/1mus.pdb.gz 1musA:Skipped atom 1620, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 1622, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 1624, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 1626, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 1628, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 1676, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 1678, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3838, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3840, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3945, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3947, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3949, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3951, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3953, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3955, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3957, because occupancy 0.500 <= existing 0.500 in 1musA # 1musA.254.33 read from T0547.t2k.many.frag # adding 1musA to template set # found chain 1musA in template set Warning: unaligning (T0547)G262 (1musA)S42 because P (beta_P) conformation "forbidden" or filtered. T0547 254 :IYTELRKM 1musA 34 :VAAQLAKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=37384 # 1v2zA.254.23 read from T0547.t2k.many.frag # found chain 1v2zA in training set Warning: unaligning (T0547)G262 (1v2zA)Y204 because P (beta_P) conformation "forbidden" or filtered. T0547 254 :IYTELRKM 1v2zA 196 :IYRTIVLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=37385 # 1esc.254.229 read from T0547.t2k.many.frag # found chain 1esc in template set T0547 254 :IYTELRKMG 1esc 230 :AMKKAAADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37386 # 1v7wA.254.295 read from T0547.t2k.many.frag # found chain 1v7wA in training set Warning: unaligning (T0547)G262 (1v7wA)F304 because D (zeta) conformation "forbidden" or filtered. T0547 254 :IYTELRKM 1v7wA 296 :HWDERCAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=37387 # 1ki9A.254.157 read from T0547.t2k.many.frag # found chain 1ki9A in template set T0547 254 :IYTELRKMG 1ki9A 158 :AAMTYGVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37388 # 1wkqA.254.20 read from T0547.t2k.many.frag # found chain 1wkqA in training set T0547 254 :IYTELRKMG 1wkqA 13 :LACEGVNAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37389 # 1kxu.255.156 read from T0547.t2k.many.frag # found chain 1kxu in template set Warning: unaligning (T0547)A263 (1kxu)N155 because L (left) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 1kxu 147 :ELLLIQQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=37390 # 1yb0A.255.111 read from T0547.t2k.many.frag # found chain 1yb0A in template set Warning: unaligning (T0547)G262 (1yb0A)Y119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1yb0A)N120 because L (left) conformation "forbidden" or filtered. T0547 255 :YTELRKM 1yb0A 112 :VRQLMSM Number of specific fragments extracted= 1 number of extra gaps= 1 total=37391 # 1evlA.255.162 read from T0547.t2k.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)G262 (1evlA)F411 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1evlA)G412 because L (left) conformation "forbidden" or filtered. T0547 255 :YTELRKM 1evlA 404 :VYDMYST Number of specific fragments extracted= 1 number of extra gaps= 1 total=37392 # 2bk9A.255.68 read from T0547.t2k.many.frag # found chain 2bk9A in training set Warning: unaligning (T0547)G262 (2bk9A)L76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (2bk9A)G77 because T (delta_L) conformation "forbidden" or filtered. T0547 255 :YTELRKM 2bk9A 69 :FDESIQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=37393 # 1fvpA.255.183 read from T0547.t2k.many.frag # found chain 1fvpA in template set Warning: unaligning (T0547)G262 (1fvpA)F191 because G (3-10) conformation "forbidden" or filtered. T0547 255 :YTELRKM 1fvpA 184 :VANLAGK T0547 263 :A 1fvpA 192 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=37395 # 2cx6A.255.72 read from T0547.t2k.many.frag # found chain 2cx6A in template set Warning: unaligning (T0547)A263 (2cx6A)E81 because L (left) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 2cx6A 73 :FDEAEEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=37396 # 2etsA.255.113 read from T0547.t2k.many.frag # found chain 2etsA in template set Warning: unaligning (T0547)A263 because last residue in template chain is (2etsA)T110 T0547 255 :YTELRKMG 2etsA 102 :LQNILDGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37397 # 1b5l.255.17 read from T0547.t2k.many.frag # found chain 1b5l in template set T0547 255 :YTELRKMGA 1b5l 18 :LDRMNRLSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=37398 # 1d8wA.255.175 read from T0547.t2k.many.frag # found chain 1d8wA in training set T0547 255 :YTELRKMGA 1d8wA 177 :SAYFGEQLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37399 # 1e4cP.255.13 read from T0547.t2k.many.frag # found chain 1e4cP in training set T0547 255 :YTELRKMGA 1e4cP 14 :CLEMTRLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37400 1obdA expands to /projects/compbio/data/pdb/1obd.pdb.gz 1obdA:Skipped atom 10, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 26, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 27, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 44, because occupancy 0.300 <= existing 0.700 in 1obdA Skipped atom 45, because occupancy 0.300 <= existing 0.700 in 1obdA Skipped atom 46, because occupancy 0.300 <= existing 0.700 in 1obdA Skipped atom 107, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 108, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 109, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 110, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 134, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 135, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 136, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 137, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 138, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 139, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 140, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 154, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 155, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 156, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 157, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 158, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 185, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 186, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 187, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 188, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 360, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 361, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 362, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 493, because occupancy 0.200 <= existing 0.800 in 1obdA Skipped atom 494, because occupancy 0.200 <= existing 0.800 in 1obdA Skipped atom 608, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 609, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 610, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 611, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 612, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 613, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 614, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 656, because occupancy 0.600 <= existing 0.600 in 1obdA Skipped atom 657, because occupancy 0.600 <= existing 0.600 in 1obdA Skipped atom 658, because occupancy 0.600 <= existing 0.600 in 1obdA Skipped atom 659, because occupancy 0.600 <= existing 0.600 in 1obdA Skipped atom 708, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 709, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 710, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 711, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 772, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 774, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 775, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 776, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 844, because occupancy 0.400 <= existing 0.600 in 1obdA Skipped atom 845, because occupancy 0.400 <= existing 0.600 in 1obdA Skipped atom 846, because occupancy 0.400 <= existing 0.600 in 1obdA Skipped atom 999, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1000, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1001, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1002, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1003, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1143, because occupancy 0.000 <= existing 0.500 in 1obdA Skipped atom 1144, because occupancy 0.000 <= existing 0.500 in 1obdA Skipped atom 1145, because occupancy 0.000 <= existing 0.500 in 1obdA Skipped atom 1146, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1309, because occupancy 0.400 <= existing 0.600 in 1obdA Skipped atom 1310, because occupancy 0.400 <= existing 0.600 in 1obdA Skipped atom 1311, because occupancy 0.400 <= existing 0.600 in 1obdA Skipped atom 1312, because occupancy 0.400 <= existing 0.600 in 1obdA Skipped atom 1313, because occupancy 0.400 <= existing 0.600 in 1obdA Skipped atom 1367, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1368, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1369, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1513, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1557, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1558, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1559, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1560, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1561, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1793, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1794, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1795, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1796, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1855, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1856, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1857, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 1858, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2106, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2107, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2108, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2109, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2110, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2150, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2151, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2152, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2153, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2154, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2155, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2156, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2232, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2233, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2234, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2235, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2435, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2436, because occupancy 0.500 <= existing 0.500 in 1obdA Skipped atom 2437, because occupancy 0.500 <= existing 0.500 in 1obdA # 1obdA.255.60 read from T0547.t2k.many.frag # adding 1obdA to template set # found chain 1obdA in template set T0547 255 :YTELRKMGA 1obdA 61 :SEFWFKFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37401 # 1kufA.255.41 read from T0547.t2k.many.frag # found chain 1kufA in template set Warning: unaligning (T0547)R259 (1kufA)C46 because G (3-10) conformation "forbidden" or filtered. T0547 255 :YTEL 1kufA 42 :INEM T0547 260 :KMGA 1kufA 47 :RPLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=37403 # 1wddA.255.224 read from T0547.t2k.many.frag # found chain 1wddA in training set T0547 255 :YTELRKMGA 1wddA 225 :IYKSQAETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37404 # 1v7zA.255.102 read from T0547.t2k.many.frag # found chain 1v7zA in training set T0547 255 :YTELRKMGA 1v7zA 103 :IRELARHGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37405 1sa3A expands to /projects/compbio/data/pdb/1sa3.pdb.gz 1sa3A:# 1sa3A.255.62 read from T0547.t2k.many.frag # adding 1sa3A to template set # found chain 1sa3A in template set Warning: unaligning (T0547)G262 (1sa3A)L70 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1sa3A)N71 because L (left) conformation "forbidden" or filtered. T0547 255 :YTELRKM 1sa3A 63 :SSKLLKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=37406 # 1ki9A.255.158 read from T0547.t2k.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)A263 (1ki9A)G167 because T (delta_L) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 1ki9A 159 :AMTYGVLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=37407 # 1otsA.255.276 read from T0547.t2k.many.frag # found chain 1otsA in template set Warning: unaligning (T0547)A263 (1otsA)G285 because L (left) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 1otsA 277 :QDLLHRVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=37408 1xpjA expands to /projects/compbio/data/pdb/1xpj.pdb.gz 1xpjA:Skipped atom 15, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 17, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 19, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 21, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 28, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 30, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 32, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 34, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 99, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 101, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 103, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 213, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 215, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 219, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 221, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 223, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 279, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 281, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 283, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 290, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 292, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 294, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 296, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 298, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 300, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 307, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 309, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 311, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 313, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 342, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 346, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 348, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 355, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 357, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 359, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 431, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 433, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 435, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 437, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 439, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 441, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 456, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 458, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 460, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 529, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 531, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 533, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 535, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 614, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 616, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 623, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 625, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 627, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 629, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 666, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 668, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 670, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 672, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 689, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 691, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 693, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 695, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 772, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 774, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 776, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 778, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 785, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 787, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 794, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 796, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 798, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 800, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 802, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 804, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 806, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 808, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 810, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 817, because occupancy 0.400 <= existing 0.600 in 1xpjA Skipped atom 828, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 830, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 832, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 834, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 836, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 902, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 904, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 906, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 908, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 910, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 912, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 931, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 933, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 935, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 937, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 939, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 941, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 948, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 950, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1010, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1012, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1014, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1030, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1032, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1107, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1109, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1111, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1113, because occupancy 0.500 <= existing 0.500 in 1xpjA # 1xpjA.255.68 read from T0547.t2k.many.frag # adding 1xpjA to template set # found chain 1xpjA in template set T0547 255 :YTELRKMGA 1xpjA 69 :ITEWLDKHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37409 # 1musA.255.34 read from T0547.t2k.many.frag # found chain 1musA in template set T0547 255 :YTELRKMGA 1musA 35 :AAQLAKYSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37410 # 1wu7A.255.245 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 255 :YTELRKMGA 1wu7A 246 :EDLLASYGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37411 # 1qlwA.255.272 read from T0547.t2k.many.frag # found chain 1qlwA in training set T0547 255 :YTELRKMGA 1qlwA 273 :IDALNAAGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37412 # 1m5wA.255.178 read from T0547.t2k.many.frag # found chain 1m5wA in template set T0547 255 :YTELRKMGA 1m5wA 179 :ATFAASLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37413 # 1zy9A.255.324 read from T0547.t2k.many.frag # found chain 1zy9A in template set Warning: unaligning (T0547)A263 (1zy9A)Y321 because P (beta_P) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 1zy9A 313 :FSSLRKMG Number of specific fragments extracted= 1 number of extra gaps= 1 total=37414 2c8mA expands to /projects/compbio/data/pdb/2c8m.pdb.gz 2c8mA:# 2c8mA.255.109 read from T0547.t2k.many.frag # adding 2c8mA to template set # found chain 2c8mA in template set Warning: unaligning (T0547)A263 (2c8mA)G118 because T (delta_L) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 2c8mA 110 :VVNSLRIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=37415 # 1ei6A.255.224 read from T0547.t2k.many.frag # found chain 1ei6A in template set T0547 255 :YTELRKMGA 1ei6A 226 :FKRYHEQGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37416 # 1y42X.255.145 read from T0547.t2k.many.frag # found chain 1y42X in template set Warning: unaligning (T0547)G262 (1y42X)R184 because G (3-10) conformation "forbidden" or filtered. T0547 255 :YTELRKM 1y42X 177 :VDTQMRA T0547 263 :A 1y42X 185 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=37418 # 2absA.255.246 read from T0547.t2k.many.frag # found chain 2absA in training set Warning: unaligning (T0547)A263 (2absA)N235 because L (left) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 2absA 227 :FAHLAKVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=37419 # 2cbiA.255.250 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 255 :YTELRKMGA 2cbiA 281 :AESLYDMGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37420 # 1qu9A.255.56 read from T0547.t2k.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)A263 (1qu9A)G65 because T (delta_L) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 1qu9A 57 :VKAIVEAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=37421 # 1ga6A.255.153 read from T0547.t2k.many.frag # found chain 1ga6A in training set T0547 255 :YTELRKMGA 1ga6A 154 :FATAAAQGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37422 # 1evlA.256.163 read from T0547.t2k.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)A263 (1evlA)G412 because L (left) conformation "forbidden" or filtered. T0547 256 :TELRKMG 1evlA 405 :YDMYSTF T0547 264 :K 1evlA 413 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=37424 # 1kxu.256.157 read from T0547.t2k.many.frag # found chain 1kxu in template set Warning: unaligning (T0547)G262 (1kxu)L154 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1kxu)N155 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1kxu)F156 because T (delta_L) conformation "forbidden" or filtered. T0547 256 :TELRKM 1kxu 148 :LLLIQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=37425 # 2cx6A.256.73 read from T0547.t2k.many.frag # found chain 2cx6A in template set Warning: unaligning (T0547)A263 (2cx6A)E81 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (2cx6A)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 256 :TELRKMG 2cx6A 74 :DEAEEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=37426 # 1yb0A.256.112 read from T0547.t2k.many.frag # found chain 1yb0A in template set Warning: unaligning (T0547)G262 (1yb0A)Y119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1yb0A)N120 because L (left) conformation "forbidden" or filtered. T0547 256 :TELRKM 1yb0A 113 :RQLMSM T0547 264 :K 1yb0A 121 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=37428 # 1y42X.256.146 read from T0547.t2k.many.frag # found chain 1y42X in template set T0547 256 :TELRKMGAK 1y42X 178 :DTQMRARGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37429 # 1fvpA.256.184 read from T0547.t2k.many.frag # found chain 1fvpA in template set Warning: unaligning (T0547)K264 (1fvpA)N193 because L (left) conformation "forbidden" or filtered. T0547 256 :TELRKMGA 1fvpA 185 :ANLAGKFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=37430 # 1wu7A.256.246 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 256 :TELRKMGAK 1wu7A 247 :DLLASYGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37431 # 2bk9A.256.69 read from T0547.t2k.many.frag # found chain 2bk9A in training set Warning: unaligning (T0547)G262 (2bk9A)L76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (2bk9A)G77 because T (delta_L) conformation "forbidden" or filtered. T0547 256 :TELRKM 2bk9A 70 :DESIQV T0547 264 :K 2bk9A 78 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=37433 # 1obdA.256.61 read from T0547.t2k.many.frag # found chain 1obdA in template set T0547 256 :TELRKMGAK 1obdA 62 :EFWFKFLSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37434 # 1sa3A.256.63 read from T0547.t2k.many.frag # found chain 1sa3A in template set Warning: unaligning (T0547)G262 (1sa3A)L70 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1sa3A)N71 because L (left) conformation "forbidden" or filtered. T0547 256 :TELRKM 1sa3A 64 :SKLLKA T0547 264 :K 1sa3A 72 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=37436 # 1ki9A.256.159 read from T0547.t2k.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)G262 (1ki9A)T166 because G (3-10) conformation "forbidden" or filtered. T0547 256 :TELRKM 1ki9A 160 :MTYGVL T0547 263 :AK 1ki9A 167 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37438 # 1musA.256.35 read from T0547.t2k.many.frag # found chain 1musA in template set Warning: unaligning (T0547)G262 (1musA)S42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1musA)G43 because T (delta_L) conformation "forbidden" or filtered. T0547 256 :TELRKM 1musA 36 :AQLAKY T0547 264 :K 1musA 44 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=37440 # 1d8wA.256.176 read from T0547.t2k.many.frag # found chain 1d8wA in training set Warning: unaligning (T0547)A263 (1d8wA)G185 because L (left) conformation "forbidden" or filtered. T0547 256 :TELRKMG 1d8wA 178 :AYFGEQL T0547 264 :K 1d8wA 186 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=37442 # 1esc.256.231 read from T0547.t2k.many.frag # found chain 1esc in template set T0547 256 :TELRKMGAK 1esc 232 :KKAAADGGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37443 # 1v7zA.256.103 read from T0547.t2k.many.frag # found chain 1v7zA in training set T0547 256 :TELRKMGAK 1v7zA 104 :RELARHGAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37444 # 1e4cP.256.14 read from T0547.t2k.many.frag # found chain 1e4cP in training set T0547 256 :TELRKMGAK 1e4cP 15 :LEMTRLGLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37445 # 1vjrA.256.178 read from T0547.t2k.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)G262 (1vjrA)T173 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1vjrA)G174 because T (delta_L) conformation "forbidden" or filtered. T0547 256 :TELRKM 1vjrA 167 :AAIEAS T0547 264 :K 1vjrA 175 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=37447 # 1wddA.256.225 read from T0547.t2k.many.frag # found chain 1wddA in training set T0547 256 :TELRKMGAK 1wddA 226 :YKSQAETGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37448 # 1b5l.256.18 read from T0547.t2k.many.frag # found chain 1b5l in template set T0547 256 :TELRKMGAK 1b5l 19 :DRMNRLSPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=37449 # 2c8mA.256.110 read from T0547.t2k.many.frag # found chain 2c8mA in template set Warning: unaligning (T0547)G262 (2c8mA)L117 because G (3-10) conformation "forbidden" or filtered. T0547 256 :TELRKM 2c8mA 111 :VNSLRI T0547 263 :AK 2c8mA 118 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37451 # 1xpjA.256.69 read from T0547.t2k.many.frag # found chain 1xpjA in template set Warning: unaligning (T0547)G262 (1xpjA)H76 because G (3-10) conformation "forbidden" or filtered. T0547 256 :TELRKM 1xpjA 70 :TEWLDK T0547 263 :AK 1xpjA 77 :QV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37453 # 1pb7A.256.71 read from T0547.t2k.many.frag # found chain 1pb7A in training set Warning: unaligning (T0547)A263 (1pb7A)N79 because L (left) conformation "forbidden" or filtered. T0547 256 :TELRKMG 1pb7A 72 :IKLARTM T0547 264 :K 1pb7A 80 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=37455 # 1ct5A.256.205 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G262 (1ct5A)F213 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1ct5A)G214 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)S216 T0547 256 :TELRKM 1ct5A 207 :KKIDAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=37456 # 1chd.256.169 read from T0547.t2k.many.frag # found chain 1chd in training set T0547 256 :TELRKMGAK 1chd 316 :REAINMGGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37457 # 1r6xA.256.179 read from T0547.t2k.many.frag # found chain 1r6xA in training set Warning: unaligning (T0547)A263 (1r6xA)W188 because N (gamma') conformation "forbidden" or filtered. T0547 256 :TELRKMG 1r6xA 181 :LEFQSRQ T0547 264 :K 1r6xA 189 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=37459 # 1qu9A.256.57 read from T0547.t2k.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)A263 (1qu9A)G65 because T (delta_L) conformation "forbidden" or filtered. T0547 256 :TELRKMG 1qu9A 58 :KAIVEAA T0547 264 :K 1qu9A 66 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=37461 # 1ryiA.256.90 read from T0547.t2k.many.frag # found chain 1ryiA in training set T0547 256 :TELRKMGAK 1ryiA 78 :EELYALSGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37462 # 1m5wA.256.179 read from T0547.t2k.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)K264 (1m5wA)K188 because P (beta_P) conformation "forbidden" or filtered. T0547 256 :TELRKMGA 1m5wA 180 :TFAASLGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=37463 # 1ursA.256.50 read from T0547.t2k.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)K264 (1ursA)D59 because P (beta_P) conformation "forbidden" or filtered. T0547 256 :TELRKMGA 1ursA 51 :AQWAKAHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=37464 # 1gudA.256.96 read from T0547.t2k.many.frag # found chain 1gudA in training set Warning: unaligning (T0547)A263 (1gudA)G104 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1gudA)N105 because Y (epsilon') conformation "forbidden" or filtered. T0547 256 :TELRKMG 1gudA 97 :DNLKKAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=37465 # 1xpjA.257.70 read from T0547.t2k.many.frag # found chain 1xpjA in template set Warning: unaligning (T0547)A263 (1xpjA)Q77 because L (left) conformation "forbidden" or filtered. T0547 257 :ELRKMG 1xpjA 71 :EWLDKH T0547 264 :KN 1xpjA 78 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=37467 # 2cx6A.257.74 read from T0547.t2k.many.frag # found chain 2cx6A in template set Warning: unaligning (T0547)K264 (2cx6A)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 257 :ELRKMGA 2cx6A 75 :EAEEELE T0547 265 :N 2cx6A 83 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=37469 # 1fvpA.257.185 read from T0547.t2k.many.frag # found chain 1fvpA in template set Warning: unaligning (T0547)G262 (1fvpA)F191 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1fvpA)D192 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1fvpA)N193 because L (left) conformation "forbidden" or filtered. T0547 257 :ELRKM 1fvpA 186 :NLAGK T0547 265 :N 1fvpA 194 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=37471 2ffeA expands to /projects/compbio/data/pdb/2ffe.pdb.gz 2ffeA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2ffeA.257.114 read from T0547.t2k.many.frag # adding 2ffeA to template set # found chain 2ffeA in template set Warning: unaligning (T0547)A263 (2ffeA)G121 because L (left) conformation "forbidden" or filtered. T0547 257 :ELRKMG 2ffeA 115 :KLSSLF T0547 264 :KN 2ffeA 122 :IK Number of specific fragments extracted= 2 number of extra gaps= 1 total=37473 # 1sa3A.257.64 read from T0547.t2k.many.frag # found chain 1sa3A in template set Warning: unaligning (T0547)A263 (1sa3A)N71 because L (left) conformation "forbidden" or filtered. T0547 257 :ELRKMG 1sa3A 65 :KLLKAL T0547 264 :KN 1sa3A 72 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=37475 # 1ryiA.257.91 read from T0547.t2k.many.frag # found chain 1ryiA in training set Warning: unaligning (T0547)G262 (1ryiA)S84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1ryiA)G85 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1ryiA)D87 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKM 1ryiA 79 :ELYAL T0547 264 :K 1ryiA 86 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=37477 # 1obdA.257.62 read from T0547.t2k.many.frag # found chain 1obdA in template set T0547 257 :ELRKMGAKN 1obdA 63 :FWFKFLSND Number of specific fragments extracted= 1 number of extra gaps= 0 total=37478 # 1vjrA.257.179 read from T0547.t2k.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)G262 (1vjrA)T173 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1vjrA)G174 because T (delta_L) conformation "forbidden" or filtered. T0547 257 :ELRKM 1vjrA 168 :AIEAS T0547 264 :KN 1vjrA 175 :RK Number of specific fragments extracted= 2 number of extra gaps= 1 total=37480 # 1ki9A.257.160 read from T0547.t2k.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)G262 (1ki9A)T166 because G (3-10) conformation "forbidden" or filtered. T0547 257 :ELRKM 1ki9A 161 :TYGVL T0547 263 :AKN 1ki9A 167 :GAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37482 # 1pb7A.257.72 read from T0547.t2k.many.frag # found chain 1pb7A in training set Warning: unaligning (T0547)G262 (1pb7A)M78 because G (3-10) conformation "forbidden" or filtered. T0547 257 :ELRKM 1pb7A 73 :KLART T0547 263 :AKN 1pb7A 79 :NFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37484 # 1kxu.257.158 read from T0547.t2k.many.frag # found chain 1kxu in template set Warning: unaligning (T0547)A263 (1kxu)N155 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1kxu)F156 because T (delta_L) conformation "forbidden" or filtered. T0547 257 :ELRKMG 1kxu 149 :LLIQQL T0547 265 :N 1kxu 157 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=37486 # 1ursA.257.51 read from T0547.t2k.many.frag # found chain 1ursA in training set T0547 257 :ELRKMGAKN 1ursA 52 :QWAKAHGDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37487 # 2c8mA.257.111 read from T0547.t2k.many.frag # found chain 2c8mA in template set Warning: unaligning (T0547)G262 (2c8mA)L117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (2c8mA)G118 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (2c8mA)D120 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKM 2c8mA 112 :NSLRI T0547 264 :K 2c8mA 119 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=37489 # 1tuoA.257.298 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)N265 (1tuoA)G307 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMGAK 1tuoA 299 :RLGERLGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=37490 # 1ct5A.257.206 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)A263 (1ct5A)G214 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)S216 Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)S216 T0547 257 :ELRKMG 1ct5A 208 :KIDAKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=37491 1qmyA expands to /projects/compbio/data/pdb/1qmy.pdb.gz 1qmyA:# 1qmyA.257.56 read from T0547.t2k.many.frag # adding 1qmyA to template set # found chain 1qmyA in template set T0547 257 :ELRKMGAKN 1qmyA 85 :QLEDLTGLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37492 # 1y42X.257.147 read from T0547.t2k.many.frag # found chain 1y42X in template set Warning: unaligning (T0547)G262 (1y42X)R184 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1y42X)G185 because T (delta_L) conformation "forbidden" or filtered. T0547 257 :ELRKM 1y42X 179 :TQMRA T0547 264 :KN 1y42X 186 :YE Number of specific fragments extracted= 2 number of extra gaps= 1 total=37494 # 1d8wA.257.177 read from T0547.t2k.many.frag # found chain 1d8wA in training set Warning: unaligning (T0547)G262 (1d8wA)L184 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1d8wA)G185 because L (left) conformation "forbidden" or filtered. T0547 257 :ELRKM 1d8wA 179 :YFGEQ T0547 264 :KN 1d8wA 186 :TP Number of specific fragments extracted= 2 number of extra gaps= 1 total=37496 # 1gjwA.257.371 read from T0547.t2k.many.frag # found chain 1gjwA in template set Warning: unaligning (T0547)A263 (1gjwA)G378 because L (left) conformation "forbidden" or filtered. T0547 257 :ELRKMG 1gjwA 372 :HYQKKY T0547 264 :KN 1gjwA 379 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=37498 # 1wu7A.257.247 read from T0547.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)M261 (1wu7A)Y252 because G (3-10) conformation "forbidden" or filtered. T0547 257 :ELRK 1wu7A 248 :LLAS T0547 262 :GAKN 1wu7A 253 :GVKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=37500 # 1nu0A.257.81 read from T0547.t2k.many.frag # found chain 1nu0A in training set T0547 257 :ELRKMGAKN 1nu0A 82 :RIHGRFGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37501 2b99A expands to /projects/compbio/data/pdb/2b99.pdb.gz 2b99A:# 2b99A.257.85 read from T0547.t2k.many.frag # adding 2b99A to template set # found chain 2b99A in template set Warning: unaligning (T0547)G262 (2b99A)T91 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (2b99A)N92 because L (left) conformation "forbidden" or filtered. T0547 257 :ELRKM 2b99A 86 :LAQLM T0547 264 :KN 2b99A 93 :KH Number of specific fragments extracted= 2 number of extra gaps= 1 total=37503 # 1evlA.257.164 read from T0547.t2k.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)A263 (1evlA)G412 because L (left) conformation "forbidden" or filtered. T0547 257 :ELRKMG 1evlA 406 :DMYSTF T0547 264 :KN 1evlA 413 :FE Number of specific fragments extracted= 2 number of extra gaps= 1 total=37505 # 1a4iA.257.153 read from T0547.t2k.many.frag # found chain 1a4iA in training set T0547 257 :ELRKMGAKN 1a4iA 154 :ELIKETGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=37506 # 2etjA.257.103 read from T0547.t2k.many.frag # found chain 2etjA in training set T0547 257 :ELRKMGAKN 2etjA 92 :RALENLSVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37507 1sw5B expands to /projects/compbio/data/pdb/1sw5.pdb.gz 1sw5B:# 1sw5B.257.26 read from T0547.t2k.many.frag # adding 1sw5B to template set # found chain 1sw5B in template set T0547 257 :ELRKMGAKN 1sw5B 27 :ILLEENGYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37508 # 2a84A.257.169 read from T0547.t2k.many.frag # found chain 2a84A in training set Warning: unaligning (T0547)A263 (2a84A)N176 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (2a84A)L177 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMG 2a84A 170 :QLVADF T0547 265 :N 2a84A 178 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=37510 # 1o0sA.257.444 read from T0547.t2k.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)A263 (1o0sA)N451 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1o0sA)G452 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1o0sA)A453 because G (3-10) conformation "forbidden" or filtered. T0547 257 :ELRKMG 1o0sA 445 :EAYTFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=37511 # 1yb0A.257.113 read from T0547.t2k.many.frag # found chain 1yb0A in template set Warning: unaligning (T0547)G262 (1yb0A)Y119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1yb0A)N120 because L (left) conformation "forbidden" or filtered. T0547 257 :ELRKM 1yb0A 114 :QLMSM T0547 264 :KN 1yb0A 121 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=37513 # 2bk9A.257.70 read from T0547.t2k.many.frag # found chain 2bk9A in training set Warning: unaligning (T0547)G262 (2bk9A)L76 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKM 2bk9A 71 :ESIQV T0547 263 :AKN 2bk9A 77 :GQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=37515 # 1ki9A.258.161 read from T0547.t2k.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)G262 (1ki9A)T166 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1ki9A)G167 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1ki9A)A168 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 (1ki9A)V170 because D (zeta) conformation "forbidden" or filtered. T0547 258 :LRKM 1ki9A 162 :YGVL T0547 265 :N 1ki9A 169 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=37517 # 1vjrA.258.180 read from T0547.t2k.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)A263 (1vjrA)G174 because T (delta_L) conformation "forbidden" or filtered. T0547 258 :LRKMG 1vjrA 169 :IEAST T0547 264 :KNL 1vjrA 175 :RKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=37519 # 1ryiA.258.92 read from T0547.t2k.many.frag # found chain 1ryiA in training set Warning: unaligning (T0547)G262 (1ryiA)S84 because G (3-10) conformation "forbidden" or filtered. T0547 258 :LRKM 1ryiA 80 :LYAL T0547 263 :AKNL 1ryiA 85 :GVDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37521 # 2ffeA.258.115 read from T0547.t2k.many.frag # found chain 2ffeA in template set Warning: unaligning (T0547)G262 (2ffeA)F120 because G (3-10) conformation "forbidden" or filtered. T0547 258 :LRKM 2ffeA 116 :LSSL T0547 263 :AKNL 2ffeA 121 :GIKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37523 # 1ursA.258.52 read from T0547.t2k.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)A263 (1ursA)G58 because T (delta_L) conformation "forbidden" or filtered. T0547 258 :LRKMG 1ursA 53 :WAKAH T0547 264 :KNL 1ursA 59 :DKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37525 # 1nu0A.258.82 read from T0547.t2k.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)A263 (1nu0A)G88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1nu0A)V89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1nu0A)E90 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRKMG 1nu0A 83 :IHGRF T0547 266 :L 1nu0A 91 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=37527 # 1ct5A.258.207 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G262 (1ct5A)F213 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1ct5A)G214 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)S216 Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)S216 T0547 258 :LRKM 1ct5A 209 :IDAK T0547 266 :L 1ct5A 217 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=37529 # 1sw5B.258.27 read from T0547.t2k.many.frag # found chain 1sw5B in template set Warning: unaligning (T0547)G262 (1sw5B)N32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1sw5B)G33 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1sw5B)Y34 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRKM 1sw5B 28 :LLEE T0547 265 :NL 1sw5B 35 :KA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37531 # 1tuoA.258.299 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)A263 (1tuoA)G305 because T (delta_L) conformation "forbidden" or filtered. T0547 258 :LRKMG 1tuoA 300 :LGERL T0547 264 :KNL 1tuoA 306 :FGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37533 # 1xpjA.258.71 read from T0547.t2k.many.frag # found chain 1xpjA in template set Warning: unaligning (T0547)G262 (1xpjA)H76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1xpjA)Q77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1xpjA)P79 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRKM 1xpjA 72 :WLDK T0547 264 :K 1xpjA 78 :V T0547 266 :L 1xpjA 80 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=37536 # 1qmyA.258.57 read from T0547.t2k.many.frag # found chain 1qmyA in template set Warning: unaligning (T0547)G262 (1qmyA)T90 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1qmyA)G91 because T (delta_L) conformation "forbidden" or filtered. T0547 258 :LRKM 1qmyA 86 :LEDL T0547 264 :KNL 1qmyA 92 :LEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37538 # 2bfdB.258.243 read from T0547.t2k.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)G262 (2bfdB)L245 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (2bfdB)G246 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (2bfdB)S248 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRKM 2bfdB 241 :AKEK T0547 264 :K 2bfdB 247 :V T0547 266 :L 2bfdB 249 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=37541 # 1gjwA.258.372 read from T0547.t2k.many.frag # found chain 1gjwA in template set Warning: unaligning (T0547)A263 (1gjwA)G378 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 (1gjwA)G381 because Y (epsilon') conformation "forbidden" or filtered. T0547 258 :LRKMG 1gjwA 373 :YQKKY T0547 264 :KN 1gjwA 379 :ID Number of specific fragments extracted= 2 number of extra gaps= 2 total=37543 1pq4A expands to /projects/compbio/data/pdb/1pq4.pdb.gz 1pq4A:# 1pq4A.258.254 read from T0547.t2k.many.frag # adding 1pq4A to template set # found chain 1pq4A in template set Warning: unaligning (T0547)G262 (1pq4A)I305 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1pq4A)G306 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1pq4A)A307 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1pq4A)G308 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRKM 1pq4A 301 :IAAE T0547 266 :L 1pq4A 309 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=37545 # 1s3cA.258.20 read from T0547.t2k.many.frag # found chain 1s3cA in training set Warning: unaligning (T0547)G262 (1s3cA)S25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1s3cA)G26 because T (delta_L) conformation "forbidden" or filtered. T0547 258 :LRKM 1s3cA 21 :MIRN T0547 264 :KNL 1s3cA 27 :TEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=37547 # 1sa3A.258.65 read from T0547.t2k.many.frag # found chain 1sa3A in template set T0547 258 :LRKMGAKNL 1sa3A 66 :LLKALNLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37548 # 2c8mA.258.112 read from T0547.t2k.many.frag # found chain 2c8mA in template set Warning: unaligning (T0547)G262 (2c8mA)L117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (2c8mA)G118 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (2c8mA)L119 because E (beta_S) conformation "forbidden" or filtered. T0547 258 :LRKM 2c8mA 113 :SLRI T0547 265 :NL 2c8mA 120 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37550 # 2f5xA.258.157 read from T0547.t2k.many.frag # found chain 2f5xA in training set Warning: unaligning (T0547)G262 (2f5xA)L150 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (2f5xA)G151 because L (left) conformation "forbidden" or filtered. T0547 258 :LRKM 2f5xA 146 :LVEA T0547 264 :KNL 2f5xA 152 :VNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37552 # 1d8wA.258.178 read from T0547.t2k.many.frag # found chain 1d8wA in training set Warning: unaligning (T0547)G262 (1d8wA)L184 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1d8wA)G185 because L (left) conformation "forbidden" or filtered. T0547 258 :LRKM 1d8wA 180 :FGEQ T0547 264 :KNL 1d8wA 186 :TPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37554 # 2cx6A.258.75 read from T0547.t2k.many.frag # found chain 2cx6A in template set Warning: unaligning (T0547)K264 (2cx6A)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 258 :LRKMGA 2cx6A 76 :AEEELE T0547 265 :NL 2cx6A 83 :HL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37556 # 1u9yA.258.172 read from T0547.t2k.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)A263 (1u9yA)N178 because L (left) conformation "forbidden" or filtered. T0547 258 :LRKMG 1u9yA 173 :ASKIL T0547 264 :KNL 1u9yA 179 :AEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=37558 # 1fvpA.258.186 read from T0547.t2k.many.frag # found chain 1fvpA in template set Warning: unaligning (T0547)G262 (1fvpA)F191 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1fvpA)D192 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1fvpA)N193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1fvpA)D196 T0547 258 :LRKM 1fvpA 187 :LAGK T0547 265 :N 1fvpA 194 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=37560 # 2etjA.258.104 read from T0547.t2k.many.frag # found chain 2etjA in training set T0547 258 :LRKMGAKNL 2etjA 93 :ALENLSVKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=37561 # 1pb7A.258.73 read from T0547.t2k.many.frag # found chain 1pb7A in training set Warning: unaligning (T0547)A263 (1pb7A)N79 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1pb7A)F80 because E (beta_S) conformation "forbidden" or filtered. T0547 258 :LRKMG 1pb7A 74 :LARTM T0547 265 :NL 1pb7A 81 :TY Number of specific fragments extracted= 2 number of extra gaps= 1 total=37563 1z90A expands to /projects/compbio/data/pdb/1z90.pdb.gz 1z90A:# 1z90A.258.120 read from T0547.t2k.many.frag # adding 1z90A to template set # found chain 1z90A in template set Warning: unaligning (T0547)G262 (1z90A)Y125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1z90A)G126 because T (delta_L) conformation "forbidden" or filtered. T0547 258 :LRKM 1z90A 121 :LNNK T0547 264 :KNL 1z90A 127 :CKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37565 # 1wcwA.258.227 read from T0547.t2k.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)G262 (1wcwA)W232 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1wcwA)G233 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1wcwA)V234 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1wcwA)K235 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRKM 1wcwA 228 :ALRE T0547 266 :L 1wcwA 236 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=37567 # 1a4iA.258.154 read from T0547.t2k.many.frag # found chain 1a4iA in training set Warning: unaligning (T0547)A263 (1a4iA)G160 because T (delta_L) conformation "forbidden" or filtered. T0547 258 :LRKMG 1a4iA 155 :LIKET T0547 264 :KNL 1a4iA 161 :VPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37569 # 2b99A.258.86 read from T0547.t2k.many.frag # found chain 2b99A in template set T0547 258 :LRKMGAKNL 2b99A 87 :AQLMTNKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37570 # 1wu7A.258.248 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 258 :LRKMGAKNL 1wu7A 249 :LASYGVKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37571 # 1i58A.258.20 read from T0547.t2k.many.frag # found chain 1i58A in training set T0547 258 :LRKMGAKNL 1i58A 372 :LAKKMNKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37572 # 2f5xA.259.158 read from T0547.t2k.many.frag # found chain 2f5xA in training set Warning: unaligning (T0547)G262 (2f5xA)L150 because G (3-10) conformation "forbidden" or filtered. T0547 259 :RKM 2f5xA 147 :VEA T0547 263 :AKNLK 2f5xA 151 :GVNLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37574 # 1vjrA.259.181 read from T0547.t2k.many.frag # found chain 1vjrA in template set T0547 259 :RKMGAKNLK 1vjrA 170 :EASTGRKPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37575 # 1ki9A.259.162 read from T0547.t2k.many.frag # found chain 1ki9A in template set T0547 259 :RKMGAKNLK 1ki9A 163 :GVLTGATVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37576 # 2bfdB.259.244 read from T0547.t2k.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)G262 (2bfdB)L245 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (2bfdB)G246 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (2bfdB)S248 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (2bfdB)E250 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKM 2bfdB 242 :KEK T0547 264 :K 2bfdB 247 :V T0547 266 :L 2bfdB 249 :C Number of specific fragments extracted= 3 number of extra gaps= 3 total=37579 # 1s3cA.259.21 read from T0547.t2k.many.frag # found chain 1s3cA in training set Warning: unaligning (T0547)A263 (1s3cA)G26 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1s3cA)T30 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKMG 1s3cA 22 :IRNS T0547 264 :KNL 1s3cA 27 :TEP Number of specific fragments extracted= 2 number of extra gaps= 2 total=37581 # 1tuoA.259.300 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)A263 (1tuoA)G305 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1tuoA)F306 because E (beta_S) conformation "forbidden" or filtered. T0547 259 :RKMG 1tuoA 301 :GERL T0547 265 :NLK 1tuoA 307 :GVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37583 # 1xpjA.259.72 read from T0547.t2k.many.frag # found chain 1xpjA in template set Warning: unaligning (T0547)A263 (1xpjA)Q77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1xpjA)P79 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKMG 1xpjA 73 :LDKH T0547 264 :K 1xpjA 78 :V T0547 266 :LK 1xpjA 80 :YD Number of specific fragments extracted= 3 number of extra gaps= 2 total=37586 # 1ursA.259.53 read from T0547.t2k.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)A263 (1ursA)G58 because T (delta_L) conformation "forbidden" or filtered. T0547 259 :RKMG 1ursA 54 :AKAH T0547 264 :KNLK 1ursA 59 :DKVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37588 # 1nu0A.259.83 read from T0547.t2k.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)A263 (1nu0A)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 259 :RKMG 1nu0A 84 :HGRF T0547 264 :KNLK 1nu0A 89 :VEVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=37590 # 2ffeA.259.116 read from T0547.t2k.many.frag # found chain 2ffeA in template set T0547 259 :RKMGAKNLK 2ffeA 117 :SSLFGIKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37591 # 1ryiA.259.93 read from T0547.t2k.many.frag # found chain 1ryiA in training set Warning: unaligning (T0547)N265 (1ryiA)D87 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKMGAK 1ryiA 81 :YALSGV T0547 266 :LK 1ryiA 88 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37593 # 1sw5B.259.28 read from T0547.t2k.many.frag # found chain 1sw5B in template set Warning: unaligning (T0547)G262 (1sw5B)N32 because G (3-10) conformation "forbidden" or filtered. T0547 259 :RKM 1sw5B 29 :LEE T0547 263 :AKNLK 1sw5B 33 :GYKAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=37595 # 1ct5A.259.208 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)S216 Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)S216 T0547 259 :RKMGA 1ct5A 210 :DAKFG T0547 266 :LK 1ct5A 217 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=37597 # 1pq4A.259.255 read from T0547.t2k.many.frag # found chain 1pq4A in template set Warning: unaligning (T0547)G262 (1pq4A)I305 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1pq4A)E310 because E (beta_S) conformation "forbidden" or filtered. T0547 259 :RKM 1pq4A 302 :AAE T0547 263 :AKNL 1pq4A 306 :GAGV Number of specific fragments extracted= 2 number of extra gaps= 2 total=37599 # 1woqA.259.110 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)A263 (1woqA)G115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1woqA)R116 because Y (epsilon') conformation "forbidden" or filtered. T0547 259 :RKMG 1woqA 111 :TARL T0547 265 :NLK 1woqA 117 :PVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=37601 # 2etjA.259.105 read from T0547.t2k.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)G262 (2etjA)L97 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKM 2etjA 94 :LEN T0547 263 :AKNLK 2etjA 98 :SVKPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37603 # 1u9yA.259.173 read from T0547.t2k.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)G262 (1u9yA)L177 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1u9yA)D182 because Y (epsilon') conformation "forbidden" or filtered. T0547 259 :RKM 1u9yA 174 :SKI T0547 263 :AKNL 1u9yA 178 :NAEY Number of specific fragments extracted= 2 number of extra gaps= 2 total=37605 # 1qmyA.259.58 read from T0547.t2k.many.frag # found chain 1qmyA in template set Warning: unaligning (T0547)A263 (1qmyA)G91 because T (delta_L) conformation "forbidden" or filtered. T0547 259 :RKMG 1qmyA 87 :EDLT T0547 264 :KNLK 1qmyA 92 :LELH Number of specific fragments extracted= 2 number of extra gaps= 1 total=37607 # 1bykA.259.110 read from T0547.t2k.many.frag # found chain 1bykA in template set T0547 259 :RKMGAKNLK 1bykA 171 :YDQGHRNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37608 # 1wcwA.259.228 read from T0547.t2k.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)G262 (1wcwA)W232 because G (3-10) conformation "forbidden" or filtered. T0547 259 :RKM 1wcwA 229 :LRE T0547 263 :AKNLK 1wcwA 233 :GVKPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=37610 # 1gjwA.259.373 read from T0547.t2k.many.frag # found chain 1gjwA in template set Warning: unaligning (T0547)A263 (1gjwA)G378 because L (left) conformation "forbidden" or filtered. T0547 259 :RKMG 1gjwA 374 :QKKY T0547 264 :KNLK 1gjwA 379 :IDGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37612 # 1wu7A.259.249 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 259 :RKMGAKNLK 1wu7A 250 :ASYGVKNVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37613 # 1p3dA.259.139 read from T0547.t2k.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)G262 (1p3dA)A143 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1p3dA)K144 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1p3dA)T148 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1p3dA)T148 T0547 259 :RKM 1p3dA 140 :YTQ T0547 264 :KN 1p3dA 145 :LD Number of specific fragments extracted= 2 number of extra gaps= 2 total=37615 # 1sa3A.259.66 read from T0547.t2k.many.frag # found chain 1sa3A in template set Warning: unaligning (T0547)G262 (1sa3A)L70 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1sa3A)N71 because L (left) conformation "forbidden" or filtered. T0547 259 :RKM 1sa3A 67 :LKA T0547 264 :KNLK 1sa3A 72 :LDLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=37617 # 2c8mA.259.113 read from T0547.t2k.many.frag # found chain 2c8mA in template set Warning: unaligning (T0547)A263 (2c8mA)G118 because T (delta_L) conformation "forbidden" or filtered. T0547 259 :RKMG 2c8mA 114 :LRIL T0547 264 :KNLK 2c8mA 119 :LDAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37619 # 2b99A.259.87 read from T0547.t2k.many.frag # found chain 2b99A in template set Warning: unaligning (T0547)A263 (2b99A)N92 because L (left) conformation "forbidden" or filtered. T0547 259 :RKMG 2b99A 88 :QLMT T0547 264 :KNLK 2b99A 93 :KHII Number of specific fragments extracted= 2 number of extra gaps= 1 total=37621 # 1o0sA.259.446 read from T0547.t2k.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)K264 (1o0sA)G452 because L (left) conformation "forbidden" or filtered. T0547 259 :RKMGA 1o0sA 447 :YTFTN T0547 265 :NLK 1o0sA 453 :AAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37623 # 1i58A.259.21 read from T0547.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0547)G262 (1i58A)M376 because G (3-10) conformation "forbidden" or filtered. T0547 259 :RKM 1i58A 373 :AKK T0547 263 :AKNLK 1i58A 377 :NKEVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=37625 # 1knwA.259.211 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A263 (1knwA)G216 because T (delta_L) conformation "forbidden" or filtered. T0547 259 :RKMG 1knwA 212 :VIEF T0547 264 :KNLK 1knwA 217 :QDLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=37627 # 1fvpA.259.187 read from T0547.t2k.many.frag # found chain 1fvpA in template set Warning: unaligning (T0547)G262 (1fvpA)F191 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1fvpA)D192 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1fvpA)D196 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1fvpA)D196 T0547 259 :RKM 1fvpA 188 :AGK T0547 264 :KN 1fvpA 193 :NT Number of specific fragments extracted= 2 number of extra gaps= 2 total=37629 # 2bfdB.260.245 read from T0547.t2k.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)A263 (2bfdB)G246 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (2bfdB)S248 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KMG 2bfdB 243 :EKL T0547 264 :K 2bfdB 247 :V T0547 266 :LKA 2bfdB 249 :CEV Number of specific fragments extracted= 3 number of extra gaps= 2 total=37632 # 2f5xA.260.159 read from T0547.t2k.many.frag # found chain 2f5xA in training set Warning: unaligning (T0547)A263 (2f5xA)G151 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (2f5xA)L155 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KMG 2f5xA 148 :EAL T0547 264 :KNL 2f5xA 152 :VNL T0547 268 :A 2f5xA 156 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=37635 # 1ursA.260.54 read from T0547.t2k.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)K267 (1ursA)I62 because E (beta_S) conformation "forbidden" or filtered. T0547 260 :KMGAKNL 1ursA 55 :KAHGDKV T0547 268 :A 1ursA 63 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=37637 # 1s3cA.260.22 read from T0547.t2k.many.frag # found chain 1s3cA in training set Warning: unaligning (T0547)K267 (1s3cA)T30 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KMGAKNL 1s3cA 23 :RNSGTEP T0547 268 :A 1s3cA 31 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=37639 # 1nu0A.260.84 read from T0547.t2k.many.frag # found chain 1nu0A in training set T0547 260 :KMGAKNLKA 1nu0A 85 :GRFGVEVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37640 # 1bykA.260.111 read from T0547.t2k.many.frag # found chain 1bykA in template set T0547 260 :KMGAKNLKA 1bykA 172 :DQGHRNISY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37641 # 1vjrA.260.182 read from T0547.t2k.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)G262 (1vjrA)T173 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1vjrA)R175 because E (beta_S) conformation "forbidden" or filtered. T0547 260 :KM 1vjrA 171 :AS T0547 263 :A 1vjrA 174 :G T0547 265 :NLKA 1vjrA 176 :KPDL Number of specific fragments extracted= 3 number of extra gaps= 2 total=37644 # 1tuoA.260.301 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)A263 (1tuoA)G305 because T (delta_L) conformation "forbidden" or filtered. T0547 260 :KMG 1tuoA 302 :ERL T0547 264 :KNLKA 1tuoA 306 :FGVTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37646 # 1p3dA.260.140 read from T0547.t2k.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)A263 (1p3dA)K144 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1p3dA)T148 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1p3dA)T148 T0547 260 :KMG 1p3dA 141 :TQA T0547 264 :KN 1p3dA 145 :LD T0547 268 :A 1p3dA 149 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=37649 # 1woqA.260.111 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)A263 (1woqA)G115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1woqA)R116 because Y (epsilon') conformation "forbidden" or filtered. T0547 260 :KMG 1woqA 112 :ARL T0547 265 :NLKA 1woqA 117 :PVEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37651 # 1sw5B.260.29 read from T0547.t2k.many.frag # found chain 1sw5B in template set Warning: unaligning (T0547)K267 (1sw5B)E37 because E (beta_S) conformation "forbidden" or filtered. T0547 260 :KMGAKNL 1sw5B 30 :EENGYKA T0547 268 :A 1sw5B 38 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=37653 # 1xpjA.260.73 read from T0547.t2k.many.frag # found chain 1xpjA in template set Warning: unaligning (T0547)G262 (1xpjA)H76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1xpjA)Q77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1xpjA)D81 because G (3-10) conformation "forbidden" or filtered. T0547 260 :KM 1xpjA 74 :DK T0547 264 :KNL 1xpjA 78 :VPY T0547 268 :A 1xpjA 82 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=37656 # 1ki9A.260.163 read from T0547.t2k.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)A263 (1ki9A)G167 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1ki9A)I172 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KMG 1ki9A 164 :VLT T0547 264 :KNLK 1ki9A 168 :ATVK Number of specific fragments extracted= 2 number of extra gaps= 2 total=37658 # 1wu7A.260.250 read from T0547.t2k.many.frag # found chain 1wu7A in template set T0547 260 :KMGAKNLKA 1wu7A 251 :SYGVKNVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37659 # 1ct5A.260.209 read from T0547.t2k.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G262 (1ct5A)F213 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)S216 Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)S216 T0547 260 :KM 1ct5A 211 :AK T0547 263 :A 1ct5A 214 :G T0547 266 :LKA 1ct5A 217 :LKL Number of specific fragments extracted= 3 number of extra gaps= 2 total=37662 # 2ffeA.260.117 read from T0547.t2k.many.frag # found chain 2ffeA in template set Warning: unaligning (T0547)G262 (2ffeA)F120 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (2ffeA)G121 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (2ffeA)K123 because G (3-10) conformation "forbidden" or filtered. T0547 260 :KM 2ffeA 118 :SL T0547 264 :K 2ffeA 122 :I T0547 266 :LKA 2ffeA 124 :ANI Number of specific fragments extracted= 3 number of extra gaps= 2 total=37665 # 2etjA.260.106 read from T0547.t2k.many.frag # found chain 2etjA in training set T0547 260 :KMGAKNLKA 2etjA 95 :ENLSVKPSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37666 # 1pq4A.260.256 read from T0547.t2k.many.frag # found chain 1pq4A in template set Warning: unaligning (T0547)A263 (1pq4A)G306 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1pq4A)E310 because E (beta_S) conformation "forbidden" or filtered. T0547 260 :KMG 1pq4A 303 :AEI T0547 264 :KNL 1pq4A 307 :AGV T0547 268 :A 1pq4A 311 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=37669 # 1i1wA.260.116 read from T0547.t2k.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)K264 (1i1wA)G121 because T (delta_L) conformation "forbidden" or filtered. T0547 260 :KMGA 1i1wA 117 :TRYK T0547 265 :NLKA 1i1wA 122 :KIRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37671 # 1knwA.260.212 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A263 (1knwA)G216 because T (delta_L) conformation "forbidden" or filtered. T0547 260 :KMG 1knwA 213 :IEF T0547 264 :KNLKA 1knwA 217 :QDLQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37673 1xrsA expands to /projects/compbio/data/pdb/1xrs.pdb.gz 1xrsA:# 1xrsA.260.224 read from T0547.t2k.many.frag # adding 1xrsA to template set # found chain 1xrsA in template set Warning: unaligning (T0547)A263 (1xrsA)G228 because L (left) conformation "forbidden" or filtered. T0547 260 :KMG 1xrsA 225 :AEV T0547 264 :KNLKA 1xrsA 229 :KYIRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37675 # 1i58A.260.22 read from T0547.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0547)G262 (1i58A)M376 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1i58A)N377 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1i58A)N381 because N (gamma') conformation "forbidden" or filtered. T0547 260 :KM 1i58A 374 :KK T0547 264 :KNL 1i58A 378 :KEV T0547 268 :A 1i58A 382 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=37678 # 1h70A.260.146 read from T0547.t2k.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)K267 (1h70A)S153 because Y (epsilon') conformation "forbidden" or filtered. T0547 260 :KMGAKNL 1h70A 146 :EKHGLSG T0547 268 :A 1h70A 154 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=37680 # 1fvpA.260.188 read from T0547.t2k.many.frag # found chain 1fvpA in template set Warning: unaligning (T0547)A263 (1fvpA)D192 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1fvpA)N193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1fvpA)D196 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1fvpA)D196 T0547 260 :KMG 1fvpA 189 :GKF T0547 265 :N 1fvpA 194 :T T0547 268 :A 1fvpA 197 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=37683 # 2b8nA.260.274 read from T0547.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)G262 (2b8nA)K265 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (2b8nA)F267 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KM 2b8nA 263 :KE T0547 263 :A 2b8nA 266 :G T0547 265 :NLKA 2b8nA 268 :NAEI Number of specific fragments extracted= 3 number of extra gaps= 2 total=37686 # 1su8A.260.281 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)N265 (1su8A)G287 because Y (epsilon') conformation "forbidden" or filtered. T0547 260 :KMGAK 1su8A 282 :AAGAT T0547 266 :LKA 1su8A 288 :INV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37688 # 1u9yA.260.174 read from T0547.t2k.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)A263 (1u9yA)N178 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1u9yA)D182 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1u9yA)Y183 because E (beta_S) conformation "forbidden" or filtered. T0547 260 :KMG 1u9yA 175 :KIL T0547 264 :KNL 1u9yA 179 :AEY Number of specific fragments extracted= 2 number of extra gaps= 2 total=37690 # 1l5oA.260.103 read from T0547.t2k.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)A263 (1l5oA)G107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1l5oA)H111 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1l5oA)V112 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KMG 1l5oA 104 :AQA T0547 264 :KNL 1l5oA 108 :AKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=37692 1lw7A expands to /projects/compbio/data/pdb/1lw7.pdb.gz 1lw7A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1lw7A.260.104 read from T0547.t2k.many.frag # adding 1lw7A to template set # found chain 1lw7A in template set Warning: unaligning (T0547)G262 (1lw7A)K163 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1lw7A)H164 because L (left) conformation "forbidden" or filtered. T0547 260 :KM 1lw7A 161 :HE T0547 264 :KNLKA 1lw7A 165 :FEPSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37694 # 2ab0A.260.60 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE in next template residue (2ab0A)E66 Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE at template residue (2ab0A)E66 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 T0547 260 :KMGA 2ab0A 61 :EVAD T0547 267 :KA 2ab0A 68 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37696 # 2bfdB.261.246 read from T0547.t2k.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)G262 (2bfdB)L245 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (2bfdB)G246 because L (left) conformation "forbidden" or filtered. T0547 261 :M 2bfdB 244 :K T0547 264 :KNLKAI 2bfdB 247 :VSCEVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37698 # 1fvpA.261.189 read from T0547.t2k.many.frag # found chain 1fvpA in template set Warning: unaligning (T0547)K264 (1fvpA)N193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1fvpA)D196 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1fvpA)D196 T0547 261 :MGA 1fvpA 190 :KFD T0547 265 :N 1fvpA 194 :T T0547 268 :AI 1fvpA 197 :FL Number of specific fragments extracted= 3 number of extra gaps= 2 total=37701 # 2f5xA.261.160 read from T0547.t2k.many.frag # found chain 2f5xA in training set Warning: unaligning (T0547)G262 (2f5xA)L150 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (2f5xA)G151 because L (left) conformation "forbidden" or filtered. T0547 261 :M 2f5xA 149 :A T0547 264 :KNLKAI 2f5xA 152 :VNLLTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37703 # 1woqA.261.112 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)A263 (1woqA)G115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1woqA)R116 because Y (epsilon') conformation "forbidden" or filtered. T0547 261 :MG 1woqA 113 :RL T0547 265 :NLKAI 1woqA 117 :PVEVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37705 # 1bykA.261.112 read from T0547.t2k.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)A263 (1bykA)H175 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :MG 1bykA 173 :QG T0547 264 :KNLKAI 1bykA 176 :RNISYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37707 # 1i1wA.261.117 read from T0547.t2k.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)G262 (1i1wA)Y119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1i1wA)K120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1i1wA)G121 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1i1wA)K122 because G (3-10) conformation "forbidden" or filtered. T0547 261 :M 1i1wA 118 :R T0547 266 :LKAI 1i1wA 123 :IRAW Number of specific fragments extracted= 2 number of extra gaps= 1 total=37709 # 1xrsA.261.225 read from T0547.t2k.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)G262 (1xrsA)V227 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1xrsA)G228 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1xrsA)R232 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :M 1xrsA 226 :E T0547 264 :KNL 1xrsA 229 :KYI T0547 268 :AI 1xrsA 233 :LC Number of specific fragments extracted= 3 number of extra gaps= 2 total=37712 # 1xw8A.261.94 read from T0547.t2k.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)G262 (1xw8A)Q96 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1xw8A)G97 because T (delta_L) conformation "forbidden" or filtered. T0547 261 :M 1xw8A 95 :A T0547 264 :KNLKAI 1xw8A 98 :GVMRHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37714 # 1s3cA.261.23 read from T0547.t2k.many.frag # found chain 1s3cA in training set Warning: unaligning (T0547)K264 (1s3cA)T27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1s3cA)E28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1s3cA)T30 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :MGA 1s3cA 24 :NSG T0547 266 :L 1s3cA 29 :P T0547 268 :AI 1s3cA 31 :II Number of specific fragments extracted= 3 number of extra gaps= 2 total=37717 # 1nu0A.261.85 read from T0547.t2k.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)K264 (1nu0A)V89 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :MGA 1nu0A 86 :RFG T0547 265 :NLKAI 1nu0A 90 :EVKLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=37719 # 1ursA.261.55 read from T0547.t2k.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)K267 (1ursA)I62 because E (beta_S) conformation "forbidden" or filtered. T0547 261 :MGAKNL 1ursA 56 :AHGDKV T0547 268 :AI 1ursA 63 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37721 # 1knwA.261.213 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A263 (1knwA)G216 because T (delta_L) conformation "forbidden" or filtered. T0547 261 :MG 1knwA 214 :EF T0547 264 :KNLKAI 1knwA 217 :QDLQAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37723 # 1su8A.261.282 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 261 :MGAKNLKAI 1su8A 283 :AGATGINVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37724 # 1aba.261.25 read from T0547.t2k.many.frag # found chain 1aba in training set Warning: unaligning (T0547)G262 (1aba)K27 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1aba)K28 because L (left) conformation "forbidden" or filtered. T0547 261 :M 1aba 26 :V T0547 264 :KNLKAI 1aba 29 :QPFEFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37726 # 2etjA.261.107 read from T0547.t2k.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)G262 (2etjA)L97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (2etjA)K100 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :M 2etjA 96 :N T0547 263 :AK 2etjA 98 :SV T0547 266 :LKAI 2etjA 101 :PSFV Number of specific fragments extracted= 3 number of extra gaps= 2 total=37729 # 1l5oA.261.104 read from T0547.t2k.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)A263 (1l5oA)G107 because L (left) conformation "forbidden" or filtered. T0547 261 :MG 1l5oA 105 :QA T0547 264 :KNLKAI 1l5oA 108 :AKVHVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37731 # 1pq4A.261.257 read from T0547.t2k.many.frag # found chain 1pq4A in template set Warning: unaligning (T0547)G262 (1pq4A)I305 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1pq4A)G306 because L (left) conformation "forbidden" or filtered. T0547 261 :M 1pq4A 304 :E T0547 264 :KNLKAI 1pq4A 307 :AGVELL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37733 # 1nofA.261.121 read from T0547.t2k.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)A263 (1nofA)G154 because T (delta_L) conformation "forbidden" or filtered. T0547 261 :MG 1nofA 152 :TN T0547 264 :KNLKAI 1nofA 155 :APLYAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37735 # 1p3dA.261.141 read from T0547.t2k.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)G262 (1p3dA)A143 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1p3dA)K144 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1p3dA)T148 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1p3dA)T148 T0547 261 :M 1p3dA 142 :Q T0547 264 :KN 1p3dA 145 :LD T0547 268 :AI 1p3dA 149 :FV Number of specific fragments extracted= 3 number of extra gaps= 2 total=37738 # 1j0dA.261.187 read from T0547.t2k.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)K264 (1j0dA)I191 because Y (epsilon') conformation "forbidden" or filtered. T0547 261 :MGA 1j0dA 188 :ELG T0547 265 :NLKAI 1j0dA 192 :KFDKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37740 # 2fqxA.261.211 read from T0547.t2k.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)G262 (2fqxA)N228 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (2fqxA)V234 because E (beta_S) conformation "forbidden" or filtered. T0547 261 :M 2fqxA 227 :L T0547 263 :AKNLK 2fqxA 229 :GQDVW T0547 269 :I 2fqxA 235 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=37743 # 1h70A.261.147 read from T0547.t2k.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)A263 (1h70A)G149 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1h70A)S153 because Y (epsilon') conformation "forbidden" or filtered. T0547 261 :MG 1h70A 147 :KH T0547 264 :KNL 1h70A 150 :LSG T0547 268 :AI 1h70A 154 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=37746 # 2ab0A.261.61 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE in next template residue (2ab0A)E66 Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE at template residue (2ab0A)E66 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 T0547 261 :MGA 2ab0A 62 :VAD T0547 267 :KAI 2ab0A 68 :DVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37748 # 1vjrA.261.183 read from T0547.t2k.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)A268 (1vjrA)L179 because E (beta_S) conformation "forbidden" or filtered. T0547 261 :MGAKNLK 1vjrA 172 :STGRKPD T0547 269 :I 1vjrA 180 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=37750 # 2ab0A.261.26 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)G262 (2ab0A)G28 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (2ab0A)I30 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :M 2ab0A 27 :R T0547 263 :A 2ab0A 29 :G T0547 265 :NLKAI 2ab0A 31 :KVTTA Number of specific fragments extracted= 3 number of extra gaps= 2 total=37753 # 1m7gA.261.51 read from T0547.t2k.many.frag # found chain 1m7gA in training set Warning: unaligning (T0547)A263 (1m7gA)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1m7gA)V55 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :MG 1m7gA 52 :DR T0547 265 :NLKAI 1m7gA 56 :HAYRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37755 2d1pA expands to /projects/compbio/data/pdb/2d1p.pdb.gz 2d1pA:# 2d1pA.261.40 read from T0547.t2k.many.frag # adding 2d1pA to template set # found chain 2d1pA in template set Warning: unaligning (T0547)A263 (2d1pA)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (2d1pA)S36 because Y (epsilon') conformation "forbidden" or filtered. T0547 261 :MG 2d1pA 29 :AD T0547 264 :KNLK 2d1pA 32 :HELS T0547 269 :I 2d1pA 37 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=37758 # 1t1vA.261.29 read from T0547.t2k.many.frag # found chain 1t1vA in training set Warning: unaligning (T0547)G262 (1t1vA)K31 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1t1vA)R32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1t1vA)I33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1t1vA)Q34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 (1t1vA)Y35 because Y (epsilon') conformation "forbidden" or filtered. T0547 261 :M 1t1vA 30 :G T0547 267 :KAI 1t1vA 36 :QLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37760 # 1q0uA.261.176 read from T0547.t2k.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)G262 (1q0uA)M178 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :M 1q0uA 177 :R T0547 263 :AKNLKAI 1q0uA 179 :PKDLQML Number of specific fragments extracted= 2 number of extra gaps= 1 total=37762 # 1vkhA.261.110 read from T0547.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)M261 (1vkhA)K99 because G (3-10) conformation "forbidden" or filtered. T0547 262 :GAKNLKAI 1vkhA 100 :GLTNINMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=37763 # 2bfdB.262.247 read from T0547.t2k.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)A263 (2bfdB)G246 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (2bfdB)E250 because P (beta_P) conformation "forbidden" or filtered. T0547 262 :G 2bfdB 245 :L T0547 264 :KNL 2bfdB 247 :VSC T0547 268 :AIN 2bfdB 251 :VID Number of specific fragments extracted= 3 number of extra gaps= 2 total=37766 # 1xrsA.262.226 read from T0547.t2k.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)A263 (1xrsA)G228 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1xrsA)N235 because Y (epsilon') conformation "forbidden" or filtered. T0547 262 :G 1xrsA 227 :V T0547 264 :KNLKAI 1xrsA 229 :KYIRLC Number of specific fragments extracted= 2 number of extra gaps= 2 total=37768 # 1knwA.262.214 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A263 (1knwA)G216 because T (delta_L) conformation "forbidden" or filtered. T0547 262 :G 1knwA 215 :F T0547 264 :KNLKAIN 1knwA 217 :QDLQAIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37770 # 1i1wA.262.118 read from T0547.t2k.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)G262 (1i1wA)Y119 because G (3-10) conformation "forbidden" or filtered. T0547 263 :AKNLKAIN 1i1wA 120 :KGKIRAWD Number of specific fragments extracted= 1 number of extra gaps= 1 total=37771 # 1xw8A.262.95 read from T0547.t2k.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)G262 (1xw8A)Q96 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1xw8A)G97 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1xw8A)H102 because Y (epsilon') conformation "forbidden" or filtered. T0547 264 :KNLK 1xw8A 98 :GVMR T0547 269 :IN 1xw8A 103 :VK Number of specific fragments extracted= 2 number of extra gaps= 2 total=37773 # 1fvpA.262.190 read from T0547.t2k.many.frag # found chain 1fvpA in template set Warning: unaligning (T0547)G262 (1fvpA)F191 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1fvpA)D192 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1fvpA)N193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1fvpA)D196 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1fvpA)D196 T0547 265 :N 1fvpA 194 :T T0547 268 :AIN 1fvpA 197 :FLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=37775 # 1woqA.262.113 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)A263 (1woqA)G115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1woqA)R116 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1woqA)E119 because E (beta_S) conformation "forbidden" or filtered. T0547 262 :G 1woqA 114 :L T0547 265 :NL 1woqA 117 :PV T0547 268 :AIN 1woqA 120 :VIN Number of specific fragments extracted= 3 number of extra gaps= 2 total=37778 # 2etjA.262.108 read from T0547.t2k.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)N265 (2etjA)K100 because P (beta_P) conformation "forbidden" or filtered. T0547 262 :GAK 2etjA 97 :LSV T0547 266 :LKAIN 2etjA 101 :PSFVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37780 # 2f5xA.262.161 read from T0547.t2k.many.frag # found chain 2f5xA in training set Warning: unaligning (T0547)A263 (2f5xA)G151 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (2f5xA)N153 because E (beta_S) conformation "forbidden" or filtered. T0547 262 :G 2f5xA 150 :L T0547 264 :K 2f5xA 152 :V T0547 266 :LKAIN 2f5xA 154 :LLTIP Number of specific fragments extracted= 3 number of extra gaps= 2 total=37783 # 1nofA.262.122 read from T0547.t2k.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)G262 (1nofA)N153 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1nofA)A155 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1nofA)S161 because P (beta_P) conformation "forbidden" or filtered. T0547 263 :A 1nofA 154 :G T0547 265 :NLKAI 1nofA 156 :PLYAI Number of specific fragments extracted= 2 number of extra gaps= 3 total=37785 # 1aba.262.26 read from T0547.t2k.many.frag # found chain 1aba in training set Warning: unaligning (T0547)G262 (1aba)K27 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1aba)K28 because L (left) conformation "forbidden" or filtered. T0547 264 :KNLKAIN 1aba 29 :QPFEFIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=37786 # 1l5oA.262.105 read from T0547.t2k.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)G262 (1l5oA)A106 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1l5oA)G107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1l5oA)A108 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :NLKAIN 1l5oA 109 :KVHVID Number of specific fragments extracted= 1 number of extra gaps= 1 total=37787 # 1q0uA.262.177 read from T0547.t2k.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)G262 (1q0uA)M178 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1q0uA)D181 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1q0uA)Q183 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1q0uA)V186 because E (beta_S) conformation "forbidden" or filtered. T0547 263 :AK 1q0uA 179 :PK T0547 266 :L 1q0uA 182 :L T0547 268 :AI 1q0uA 184 :ML Number of specific fragments extracted= 3 number of extra gaps= 4 total=37790 # 1t1vA.262.30 read from T0547.t2k.many.frag # found chain 1t1vA in training set Warning: unaligning (T0547)L266 (1t1vA)Y35 because Y (epsilon') conformation "forbidden" or filtered. T0547 262 :GAKN 1t1vA 31 :KRIQ T0547 267 :KAIN 1t1vA 36 :QLVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=37792 # 1j0dA.262.188 read from T0547.t2k.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)A263 (1j0dA)G190 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1j0dA)I191 because Y (epsilon') conformation "forbidden" or filtered. T0547 262 :G 1j0dA 189 :L T0547 265 :NLKAIN 1j0dA 192 :KFDKIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37794 1sheA expands to /projects/compbio/data/pdb/1she.pdb.gz 1sheA:Skipped atom 145, because occupancy 0.400 <= existing 0.600 in 1sheA Skipped atom 147, because occupancy 0.400 <= existing 0.600 in 1sheA Skipped atom 149, because occupancy 0.400 <= existing 0.600 in 1sheA Skipped atom 151, because occupancy 0.400 <= existing 0.600 in 1sheA Skipped atom 153, because occupancy 0.400 <= existing 0.600 in 1sheA Skipped atom 176, because occupancy 0.500 <= existing 0.500 in 1sheA Skipped atom 178, because occupancy 0.300 <= existing 0.500 in 1sheA Skipped atom 180, because occupancy 0.300 <= existing 0.500 in 1sheA Skipped atom 182, because occupancy 0.300 <= existing 0.500 in 1sheA Skipped atom 284, because occupancy 0.350 <= existing 0.650 in 1sheA Skipped atom 286, because occupancy 0.350 <= existing 0.650 in 1sheA Skipped atom 288, because occupancy 0.350 <= existing 0.650 in 1sheA Skipped atom 290, because occupancy 0.350 <= existing 0.650 in 1sheA Skipped atom 292, because occupancy 0.350 <= existing 0.650 in 1sheA Skipped atom 538, because occupancy 0.350 <= existing 0.650 in 1sheA Skipped atom 540, because occupancy 0.350 <= existing 0.650 in 1sheA Skipped atom 542, because occupancy 0.350 <= existing 0.650 in 1sheA Skipped atom 544, because occupancy 0.350 <= existing 0.650 in 1sheA Skipped atom 546, because occupancy 0.350 <= existing 0.650 in 1sheA # 1sheA.262.31 read from T0547.t2k.many.frag # adding 1sheA to template set # found chain 1sheA in template set Warning: unaligning (T0547)G262 (1sheA)D24 because G (3-10) conformation "forbidden" or filtered. T0547 263 :AKNLKAIN 1sheA 25 :GFNPDIIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=37795 # 2fqxA.262.212 read from T0547.t2k.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)A263 (2fqxA)G229 because T (delta_L) conformation "forbidden" or filtered. T0547 262 :G 2fqxA 228 :N T0547 264 :KNLKAIN 2fqxA 230 :QDVWVIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37797 # 1yx1A.262.180 read from T0547.t2k.many.frag # found chain 1yx1A in training set T0547 262 :GAKNLKAIN 1yx1A 179 :LGRYVGYVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=37798 # 1fobA.262.123 read from T0547.t2k.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)G262 (1fobA)N124 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1fobA)D125 because L (left) conformation "forbidden" or filtered. T0547 264 :KNLKAIN 1fobA 126 :IDIEIIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=37799 # 7odcA.262.224 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K267 (7odcA)H230 because G (3-10) conformation "forbidden" or filtered. T0547 262 :GAKNL 7odcA 225 :VGFSM T0547 268 :AIN 7odcA 231 :LLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=37801 # 1i24A.262.143 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)G262 (1i24A)F134 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1i24A)G135 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1i24A)E137 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1i24A)K142 because E (beta_S) conformation "forbidden" or filtered. T0547 264 :K 1i24A 136 :E T0547 266 :LKAI 1i24A 138 :CHLV Number of specific fragments extracted= 2 number of extra gaps= 3 total=37803 # 1bykA.262.113 read from T0547.t2k.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)N270 (1bykA)G182 because Y (epsilon') conformation "forbidden" or filtered. T0547 262 :GAKNLKAI 1bykA 174 :GHRNISYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=37804 # 1nnwA.262.29 read from T0547.t2k.many.frag # found chain 1nnwA in template set Warning: unaligning (T0547)G262 (1nnwA)E30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1nnwA)G31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1nnwA)K36 because Y (epsilon') conformation "forbidden" or filtered. T0547 264 :KNLK 1nnwA 32 :YEIE T0547 269 :IN 1nnwA 37 :YY Number of specific fragments extracted= 2 number of extra gaps= 2 total=37806 2f8lA expands to /projects/compbio/data/pdb/2f8l.pdb.gz 2f8lA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 726, because occupancy 0.500 <= existing 0.500 in 2f8lA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 728, because occupancy 0.500 <= existing 0.500 in 2f8lA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 730, because occupancy 0.500 <= existing 0.500 in 2f8lA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 732, because occupancy 0.500 <= existing 0.500 in 2f8lA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 734, because occupancy 0.500 <= existing 0.500 in 2f8lA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 736, because occupancy 0.500 <= existing 0.500 in 2f8lA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 738, because occupancy 0.350 <= existing 0.350 in 2f8lA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 740, because occupancy 0.500 <= existing 0.500 in 2f8lA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1763, because occupancy 0.500 <= existing 0.500 in 2f8lA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1765, because occupancy 0.500 <= existing 0.500 in 2f8lA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1767, because occupancy 0.400 <= existing 0.400 in 2f8lA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1769, because occupancy 0.500 <= existing 0.500 in 2f8lA Skipped atom 1771, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 1773, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 1775, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 1777, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 1779, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 1781, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 1783, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 1785, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 1787, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 1789, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 1791, because occupancy 0.350 <= existing 0.650 in 2f8lA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2099, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 2101, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 2103, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 2105, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 2107, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 2109, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 2111, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 2113, because occupancy 0.350 <= existing 0.650 in 2f8lA Skipped atom 2115, because occupancy 0.350 <= existing 0.650 in 2f8lA # 2f8lA.262.127 read from T0547.t2k.many.frag # adding 2f8lA to template set # found chain 2f8lA in template set T0547 262 :GAKNLKAIN 2f8lA 116 :KKKNVSILD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37807 # 1nu0A.262.86 read from T0547.t2k.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)N265 (1nu0A)E90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1nu0A)D95 because P (beta_P) conformation "forbidden" or filtered. T0547 262 :GAK 1nu0A 87 :FGV T0547 266 :LKAI 1nu0A 91 :VKLH Number of specific fragments extracted= 2 number of extra gaps= 2 total=37809 1uhvA expands to /projects/compbio/data/pdb/1uhv.pdb.gz 1uhvA:# 1uhvA.262.217 read from T0547.t2k.many.frag # adding 1uhvA to template set # found chain 1uhvA in template set Warning: unaligning (T0547)G262 (1uhvA)E218 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1uhvA)D223 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1uhvA)F224 because Y (epsilon') conformation "forbidden" or filtered. T0547 263 :AKNL 1uhvA 219 :NVPV T0547 269 :IN 1uhvA 225 :VS Number of specific fragments extracted= 2 number of extra gaps= 2 total=37811 1cfzA expands to /projects/compbio/data/pdb/1cfz.pdb.gz 1cfzA:# 1cfzA.262.106 read from T0547.t2k.many.frag # adding 1cfzA to template set # found chain 1cfzA in template set Warning: unaligning (T0547)A263 (1cfzA)G108 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1cfzA)K113 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1cfzA)T115 because E (beta_S) conformation "forbidden" or filtered. T0547 262 :G 1cfzA 107 :T T0547 264 :KNLK 1cfzA 109 :EFPK T0547 269 :I 1cfzA 114 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=37814 # 2bogX.262.208 read from T0547.t2k.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)A263 (2bogX)N210 because N (gamma') conformation "forbidden" or filtered. T0547 262 :G 2bogX 209 :G T0547 264 :KNLKAIN 2bogX 211 :PSLRAVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37816 # 1pq4A.262.258 read from T0547.t2k.many.frag # found chain 1pq4A in template set Warning: unaligning (T0547)G262 (1pq4A)I305 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1pq4A)G306 because L (left) conformation "forbidden" or filtered. T0547 264 :KNLKAIN 1pq4A 307 :AGVELLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=37817 # 1ursA.262.56 read from T0547.t2k.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)A263 (1ursA)G58 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1ursA)I62 because E (beta_S) conformation "forbidden" or filtered. T0547 262 :G 1ursA 57 :H T0547 264 :KNL 1ursA 59 :DKV T0547 268 :AIN 1ursA 63 :VVD Number of specific fragments extracted= 3 number of extra gaps= 2 total=37820 # 1knwA.263.215 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K264 (1knwA)Q217 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1knwA)S223 because E (beta_S) conformation "forbidden" or filtered. T0547 263 :A 1knwA 216 :G T0547 265 :NLKAI 1knwA 218 :DLQAI T0547 271 :L 1knwA 224 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=37823 # 7odcA.263.225 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 263 :AKNLKAINL 7odcA 226 :GFSMHLLDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37824 # 1sheA.263.32 read from T0547.t2k.many.frag # found chain 1sheA in template set Warning: unaligning (T0547)A263 (1sheA)G25 because T (delta_L) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1sheA 26 :FNPDIILF Number of specific fragments extracted= 1 number of extra gaps= 1 total=37825 # 2bfdB.263.248 read from T0547.t2k.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)A263 (2bfdB)G246 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (2bfdB)V247 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (2bfdB)D253 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NLKAI 2bfdB 248 :SCEVI T0547 271 :L 2bfdB 254 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=37827 # 1fobA.263.124 read from T0547.t2k.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)A263 (1fobA)D125 because L (left) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1fobA 126 :IDIEIISI Number of specific fragments extracted= 1 number of extra gaps= 1 total=37828 # 1io0A.263.91 read from T0547.t2k.many.frag # found chain 1io0A in training set T0547 263 :AKNLKAINL 1io0A 251 :NNTLKSLNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37829 # 1i1wA.263.119 read from T0547.t2k.many.frag # found chain 1i1wA in training set T0547 263 :AKNLKAINL 1i1wA 120 :KGKIRAWDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37830 # 1mqoA.263.199 read from T0547.t2k.many.frag # found chain 1mqoA in training set Warning: unaligning (T0547)A263 (1mqoA)Y253 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1mqoA 254 :RNINAVVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=37831 # 1nofA.263.123 read from T0547.t2k.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)A263 (1nofA)G154 because T (delta_L) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1nofA 155 :APLYAISI Number of specific fragments extracted= 1 number of extra gaps= 1 total=37832 # 1nrzA.263.95 read from T0547.t2k.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)A263 (1nrzA)G97 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 (1nrzA)I100 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KN 1nrzA 98 :VQ T0547 267 :KAINL 1nrzA 101 :ATLNI Number of specific fragments extracted= 2 number of extra gaps= 2 total=37834 # 1uhvA.263.218 read from T0547.t2k.many.frag # found chain 1uhvA in template set Warning: unaligning (T0547)A263 (1uhvA)N219 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1uhvA)F224 because Y (epsilon') conformation "forbidden" or filtered. T0547 264 :KNLK 1uhvA 220 :VPVD T0547 269 :INL 1uhvA 225 :VSR Number of specific fragments extracted= 2 number of extra gaps= 2 total=37836 # 1xrsA.263.227 read from T0547.t2k.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)A263 (1xrsA)G228 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1xrsA)L233 because E (beta_S) conformation "forbidden" or filtered. T0547 264 :KNLK 1xrsA 229 :KYIR T0547 269 :INL 1xrsA 234 :CNY Number of specific fragments extracted= 2 number of extra gaps= 2 total=37838 # 1l5oA.263.106 read from T0547.t2k.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)A263 (1l5oA)G107 because L (left) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1l5oA 108 :AKVHVIDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=37839 # 1nvmB.263.94 read from T0547.t2k.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)A263 (1nvmB)K95 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1nvmB)G97 because G (3-10) conformation "forbidden" or filtered. T0547 264 :K 1nvmB 96 :P T0547 266 :LKAINL 1nvmB 98 :IRLIDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=37841 # 1xqwA.263.118 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)A268 (1xqwA)G124 because Y (epsilon') conformation "forbidden" or filtered. T0547 263 :AKNLK 1xqwA 119 :QDHLK T0547 269 :INL 1xqwA 125 :LIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37843 # 2etjA.263.109 read from T0547.t2k.many.frag # found chain 2etjA in training set T0547 263 :AKNLKAINL 2etjA 98 :SVKPSFVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37844 # 1j0dA.263.189 read from T0547.t2k.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)A263 (1j0dA)G190 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1j0dA)I191 because Y (epsilon') conformation "forbidden" or filtered. T0547 265 :NLKAINL 1j0dA 192 :KFDKIVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=37845 # 1cfzA.263.107 read from T0547.t2k.many.frag # found chain 1cfzA in template set T0547 263 :AKNLKAINL 1cfzA 108 :GEFPKKLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37846 # 1nnwA.263.30 read from T0547.t2k.many.frag # found chain 1nnwA in template set Warning: unaligning (T0547)A263 (1nnwA)G31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1nnwA)Y32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1nnwA)K36 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1nnwA)Y38 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :NLK 1nnwA 33 :EIE T0547 269 :I 1nnwA 37 :Y T0547 271 :L 1nnwA 39 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=37849 # 1t1vA.263.31 read from T0547.t2k.many.frag # found chain 1t1vA in training set Warning: unaligning (T0547)A263 (1t1vA)R32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 (1t1vA)Y35 because Y (epsilon') conformation "forbidden" or filtered. T0547 264 :KN 1t1vA 33 :IQ T0547 267 :KAINL 1t1vA 36 :QLVDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=37851 # 1xw8A.263.96 read from T0547.t2k.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)N265 (1xw8A)V99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1xw8A)H102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1xw8A)K104 because E (beta_S) conformation "forbidden" or filtered. T0547 263 :AK 1xw8A 97 :GG T0547 266 :LK 1xw8A 100 :MR T0547 269 :I 1xw8A 103 :V T0547 271 :L 1xw8A 105 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=37855 # 1i24A.263.144 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)A263 (1i24A)G135 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1i24A 136 :EECHLVKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=37856 # 1q0uA.263.178 read from T0547.t2k.many.frag # found chain 1q0uA in template set T0547 263 :AKNLKAINL 1q0uA 179 :PKDLQMLVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37857 # 2f8lA.263.128 read from T0547.t2k.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)A268 (2f8lA)I122 because E (beta_S) conformation "forbidden" or filtered. T0547 263 :AKNLK 2f8lA 117 :KKNVS T0547 269 :INL 2f8lA 123 :LDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=37859 # 2bogX.263.209 read from T0547.t2k.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)K267 (2bogX)R214 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (2bogX)I217 because E (beta_S) conformation "forbidden" or filtered. T0547 263 :AKNL 2bogX 210 :NPSL T0547 268 :AI 2bogX 215 :AV T0547 271 :L 2bogX 218 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=37862 # 1fvpA.263.191 read from T0547.t2k.many.frag # found chain 1fvpA in template set Warning: unaligning (T0547)K264 (1fvpA)N193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1fvpA)D196 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1fvpA)D196 T0547 263 :A 1fvpA 192 :D T0547 265 :N 1fvpA 194 :T T0547 268 :AINL 1fvpA 197 :FLLC Number of specific fragments extracted= 3 number of extra gaps= 2 total=37865 # 1jykA.263.22 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)A263 because first residue in template chain is (1jykA)E3 Warning: unaligning (T0547)K264 (1jykA)I4 because N (gamma') conformation "forbidden" or filtered. T0547 265 :NLKAINL 1jykA 5 :RVKAIIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37866 # 1woyA.263.277 read from T0547.t2k.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)N265 (1woyA)M280 because P (beta_P) conformation "forbidden" or filtered. T0547 263 :AK 1woyA 278 :IP T0547 266 :LKAINL 1woyA 281 :YRHLNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37868 # 1aba.263.27 read from T0547.t2k.many.frag # found chain 1aba in training set Warning: unaligning (T0547)A263 (1aba)K28 because L (left) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1aba 29 :QPFEFINI Number of specific fragments extracted= 1 number of extra gaps= 1 total=37869 # 2fqxA.263.213 read from T0547.t2k.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)A263 (2fqxA)G229 because T (delta_L) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 2fqxA 230 :QDVWVIGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=37870 # 1knwA.264.216 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G272 (1knwA)G225 because S (epsilon) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1knwA 217 :QDLQAISA Number of specific fragments extracted= 1 number of extra gaps= 1 total=37871 # 7odcA.264.226 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 264 :KNLKAINLG 7odcA 227 :FSMHLLDIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37872 # 1nrzA.264.96 read from T0547.t2k.many.frag # found chain 1nrzA in training set T0547 264 :KNLKAINLG 1nrzA 98 :VQIATLNIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37873 # 1fobA.264.125 read from T0547.t2k.many.frag # found chain 1fobA in training set T0547 264 :KNLKAINLG 1fobA 126 :IDIEIISIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37874 # 2bfdB.264.249 read from T0547.t2k.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)N270 (2bfdB)D253 because P (beta_P) conformation "forbidden" or filtered. T0547 264 :KNLKAI 2bfdB 247 :VSCEVI T0547 271 :LG 2bfdB 254 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37876 # 1io0A.264.92 read from T0547.t2k.many.frag # found chain 1io0A in training set T0547 264 :KNLKAINLG 1io0A 252 :NTLKSLNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37877 # 1xqwA.264.119 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)A268 (1xqwA)G124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1xqwA)I126 because E (beta_S) conformation "forbidden" or filtered. T0547 264 :KNLK 1xqwA 120 :DHLK T0547 269 :I 1xqwA 125 :L T0547 271 :LG 1xqwA 127 :VS Number of specific fragments extracted= 3 number of extra gaps= 2 total=37880 # 1sheA.264.33 read from T0547.t2k.many.frag # found chain 1sheA in template set Warning: unaligning (T0547)K264 (1sheA)F26 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NLKAINLG 1sheA 27 :NPDIILFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=37881 # 1woyA.264.278 read from T0547.t2k.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)N265 (1woyA)M280 because P (beta_P) conformation "forbidden" or filtered. T0547 264 :K 1woyA 279 :P T0547 266 :LKAINLG 1woyA 281 :YRHLNVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37883 # 1l5oA.264.107 read from T0547.t2k.many.frag # found chain 1l5oA in training set T0547 264 :KNLKAINLG 1l5oA 108 :AKVHVIDVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37884 # 1nvmB.264.95 read from T0547.t2k.many.frag # found chain 1nvmB in training set T0547 264 :KNLKAINLG 1nvmB 96 :PGIRLIDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37885 # 1mqoA.264.200 read from T0547.t2k.many.frag # found chain 1mqoA in training set T0547 264 :KNLKAINLG 1mqoA 254 :RNINAVVPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37886 # 1t1vA.264.32 read from T0547.t2k.many.frag # found chain 1t1vA in training set Warning: unaligning (T0547)L266 (1t1vA)Y35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1t1vA)Q36 because P (beta_P) conformation "forbidden" or filtered. T0547 264 :KN 1t1vA 33 :IQ T0547 268 :AINLG 1t1vA 37 :LVDIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37888 # 2f8lA.264.129 read from T0547.t2k.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)N265 (2f8lA)N119 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE in next template residue (2f8lA)C127 T0547 264 :K 2f8lA 118 :K T0547 266 :LKAINL 2f8lA 120 :VSILDP Number of specific fragments extracted= 2 number of extra gaps= 2 total=37890 # 1xrsA.264.228 read from T0547.t2k.many.frag # found chain 1xrsA in template set T0547 264 :KNLKAINLG 1xrsA 229 :KYIRLCNYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=37891 # 1i1wA.264.120 read from T0547.t2k.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)K264 (1i1wA)G121 because T (delta_L) conformation "forbidden" or filtered. T0547 265 :NLKAINLG 1i1wA 122 :KIRAWDVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=37892 # 2etjA.264.110 read from T0547.t2k.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)K264 (2etjA)V99 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :NLKAINLG 2etjA 100 :KPSFVLVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=37893 # 2bogX.264.210 read from T0547.t2k.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)G272 (2bogX)T219 because G (3-10) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 2bogX 211 :PSLRAVID Number of specific fragments extracted= 1 number of extra gaps= 1 total=37894 # 1jykA.264.23 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)K267 (1jykA)K7 because Y (epsilon') conformation "forbidden" or filtered. T0547 264 :KNL 1jykA 4 :IRV T0547 268 :AINLG 1jykA 8 :AIILA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37896 # 1nnwA.264.31 read from T0547.t2k.many.frag # found chain 1nnwA in template set Warning: unaligning (T0547)A268 (1nnwA)K36 because Y (epsilon') conformation "forbidden" or filtered. T0547 264 :KNLK 1nnwA 32 :YEIE T0547 269 :INLG 1nnwA 37 :YYIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37898 # 1m5wA.264.206 read from T0547.t2k.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)A268 (1m5wA)E211 because E (beta_S) conformation "forbidden" or filtered. T0547 264 :KNLK 1m5wA 207 :PEMH T0547 269 :INLG 1m5wA 212 :LNIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37900 # 1cfzA.264.108 read from T0547.t2k.many.frag # found chain 1cfzA in template set T0547 264 :KNLKAINLG 1cfzA 109 :EFPKKLTLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37901 # 1q0uA.264.179 read from T0547.t2k.many.frag # found chain 1q0uA in template set T0547 264 :KNLKAINLG 1q0uA 180 :KDLQMLVFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37902 # 1aba.264.28 read from T0547.t2k.many.frag # found chain 1aba in training set Warning: unaligning (T0547)A268 (1aba)F33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1aba)M37 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KNLK 1aba 29 :QPFE T0547 269 :INL 1aba 34 :INI Number of specific fragments extracted= 2 number of extra gaps= 2 total=37904 # 1i24A.264.145 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)A268 (1i24A)L140 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1i24A)G144 because P (beta_P) conformation "forbidden" or filtered. T0547 264 :KNLK 1i24A 136 :EECH T0547 269 :INL 1i24A 141 :VKL Number of specific fragments extracted= 2 number of extra gaps= 2 total=37906 # 1uhvA.264.219 read from T0547.t2k.many.frag # found chain 1uhvA in template set Warning: unaligning (T0547)K264 (1uhvA)V220 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1uhvA)P221 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L271 (1uhvA)R227 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1uhvA)H228 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LKAIN 1uhvA 222 :VDFVS Number of specific fragments extracted= 1 number of extra gaps= 2 total=37907 # 2tpsA.264.170 read from T0547.t2k.many.frag # found chain 2tpsA in training set T0547 264 :KNLKAINLG 2tpsA 179 :ISIPIVGIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37908 # 1v6sA.264.206 read from T0547.t2k.many.frag # found chain 1v6sA in training set T0547 264 :KNLKAINLG 1v6sA 207 :PRIDRLLIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37909 # 2bg5A.264.194 read from T0547.t2k.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)A268 (2bg5A)F448 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (2bg5A)G452 because N (gamma') conformation "forbidden" or filtered. T0547 264 :KNLK 2bg5A 444 :KEVD T0547 269 :INL 2bg5A 449 :FSI Number of specific fragments extracted= 2 number of extra gaps= 2 total=37911 # 1xw8A.264.97 read from T0547.t2k.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)N265 (1xw8A)V99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1xw8A)H102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1xw8A)H106 because P (beta_P) conformation "forbidden" or filtered. T0547 264 :K 1xw8A 98 :G T0547 266 :LK 1xw8A 100 :MR T0547 269 :INL 1xw8A 103 :VKP Number of specific fragments extracted= 3 number of extra gaps= 3 total=37914 # 7odcA.265.227 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 265 :NLKAINLGG 7odcA 228 :SMHLLDIGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37915 # 1knwA.265.217 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K267 (1knwA)Q220 because G (3-10) conformation "forbidden" or filtered. T0547 265 :NL 1knwA 218 :DL T0547 268 :AINLGG 1knwA 221 :AISAGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37917 # 1nrzA.265.97 read from T0547.t2k.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)L266 (1nrzA)I100 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1nrzA)G106 because G (3-10) conformation "forbidden" or filtered. T0547 265 :N 1nrzA 99 :Q T0547 267 :KAINL 1nrzA 101 :ATLNI T0547 273 :G 1nrzA 107 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=37920 # 1fobA.265.126 read from T0547.t2k.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)G273 (1fobA)N135 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :NLKAINLG 1fobA 127 :DIEIISIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=37921 # 1woyA.265.279 read from T0547.t2k.many.frag # found chain 1woyA in template set T0547 265 :NLKAINLGG 1woyA 280 :MYRHLNVGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37922 # 1nvmB.265.96 read from T0547.t2k.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)K267 (1nvmB)R99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1nvmB)T104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1nvmB)P105 because G (3-10) conformation "forbidden" or filtered. T0547 265 :NL 1nvmB 97 :GI T0547 268 :AINL 1nvmB 100 :LIDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=37924 # 2f8lA.265.130 read from T0547.t2k.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE in next template residue (2f8lA)C127 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (2f8lA)C127 T0547 265 :NLKAINL 2f8lA 119 :NVSILDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=37925 # 1xqwA.265.120 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)A268 (1xqwA)G124 because Y (epsilon') conformation "forbidden" or filtered. T0547 265 :NLK 1xqwA 121 :HLK T0547 269 :INLGG 1xqwA 125 :LIVSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37927 # 1l5oA.265.108 read from T0547.t2k.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)A268 (1l5oA)V112 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NLK 1l5oA 109 :KVH T0547 269 :INLGG 1l5oA 113 :IDVGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37929 # 2bfdB.265.250 read from T0547.t2k.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)K267 (2bfdB)E250 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (2bfdB)D253 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NL 2bfdB 248 :SC T0547 268 :AI 2bfdB 251 :VI T0547 271 :LGG 2bfdB 254 :LRT Number of specific fragments extracted= 3 number of extra gaps= 2 total=37932 # 1jykA.265.24 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)G272 (1jykA)A12 because G (3-10) conformation "forbidden" or filtered. T0547 265 :NLKAINL 1jykA 5 :RVKAIIL T0547 273 :G 1jykA 13 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=37934 # 1v6sA.265.207 read from T0547.t2k.many.frag # found chain 1v6sA in training set T0547 265 :NLKAINLGG 1v6sA 208 :RIDRLLIGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37935 # 1i24A.265.146 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)G273 (1i24A)T145 because Y (epsilon') conformation "forbidden" or filtered. T0547 265 :NLKAINLG 1i24A 137 :ECHLVKLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=37936 # 2etjA.265.111 read from T0547.t2k.many.frag # found chain 2etjA in training set T0547 265 :NLKAINLGG 2etjA 100 :KPSFVLVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37937 # 1xrsA.265.229 read from T0547.t2k.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)K267 (1xrsA)R232 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NL 1xrsA 230 :YI T0547 268 :AINLGG 1xrsA 233 :LCNYCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37939 # 1usgA.265.192 read from T0547.t2k.many.frag # found chain 1usgA in training set Warning: unaligning (T0547)N265 (1usgA)N193 because L (left) conformation "forbidden" or filtered. T0547 266 :LKAINLGG 1usgA 194 :IDFVYYGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=37940 # 2tpsA.265.171 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)K267 (2tpsA)P182 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NL 2tpsA 180 :SI T0547 268 :AINLGG 2tpsA 183 :IVGIGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37942 # 1io0A.265.93 read from T0547.t2k.many.frag # found chain 1io0A in training set Warning: unaligning (T0547)G272 (1io0A)E260 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NLKAINL 1io0A 253 :TLKSLNV T0547 273 :G 1io0A 261 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=37944 1tzlA expands to /projects/compbio/data/pdb/1tzl.pdb.gz 1tzlA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1tzlA.265.69 read from T0547.t2k.many.frag # adding 1tzlA to template set # found chain 1tzlA in template set Warning: unaligning (T0547)G272 (1tzlA)G78 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NLKAINL 1tzlA 71 :KVAMFDI T0547 273 :G 1tzlA 79 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=37946 # 2etvA.265.175 read from T0547.t2k.many.frag # found chain 2etvA in training set T0547 265 :NLKAINLGG 2etvA 188 :ESPTVYVGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37947 # 1thfD.265.194 read from T0547.t2k.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)N265 (1thfD)T195 because G (3-10) conformation "forbidden" or filtered. T0547 266 :LKAINLGG 1thfD 196 :LPIIASGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=37948 # 1t1vA.265.33 read from T0547.t2k.many.frag # found chain 1t1vA in training set Warning: unaligning (T0547)N270 (1t1vA)D39 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :NLKAI 1t1vA 34 :QYQLV T0547 271 :LGG 1t1vA 40 :ISQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=37950 # 1vr0A.265.150 read from T0547.t2k.many.frag # found chain 1vr0A in template set Warning: unaligning (T0547)N270 (1vr0A)N144 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NLKAI 1vr0A 139 :DVVIV T0547 271 :LGG 1vr0A 145 :AGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37952 # 1mqoA.265.201 read from T0547.t2k.many.frag # found chain 1mqoA in training set Warning: unaligning (T0547)G272 (1mqoA)G262 because H (helix) conformation "forbidden" or filtered. T0547 265 :NLKAINL 1mqoA 255 :NINAVVP T0547 273 :G 1mqoA 263 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=37954 # 2ab0A.265.65 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE at template residue (2ab0A)E66 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 Warning: unaligning (T0547)A268 (2ab0A)V69 because E (beta_S) conformation "forbidden" or filtered. T0547 267 :K 2ab0A 68 :D T0547 269 :INLGG 2ab0A 70 :IVLPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=37956 # 1q0uA.265.180 read from T0547.t2k.many.frag # found chain 1q0uA in template set T0547 265 :NLKAINLGG 1q0uA 181 :DLQMLVFSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37957 # 1m5wA.265.207 read from T0547.t2k.many.frag # found chain 1m5wA in template set T0547 265 :NLKAINLGG 1m5wA 208 :EMHELNIGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=37958 # 2bogX.265.211 read from T0547.t2k.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)G272 (2bogX)T219 because G (3-10) conformation "forbidden" or filtered. T0547 265 :NLKAINL 2bogX 212 :SLRAVID T0547 273 :G 2bogX 220 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=37960 # 1woqA.265.213 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N265 (1woqA)S214 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1woqA)L217 because Y (epsilon') conformation "forbidden" or filtered. T0547 266 :LK 1woqA 215 :PE T0547 269 :INLGG 1woqA 218 :FIVGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=37962 # 1es9A.265.167 read from T0547.t2k.many.frag # found chain 1es9A in training set T0547 265 :NLKAINLGG 1es9A 168 :RAHFLDADP Number of specific fragments extracted= 1 number of extra gaps= 0 total=37963 # 7odcA.266.228 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G272 (7odcA)G235 because S (epsilon) conformation "forbidden" or filtered. T0547 266 :LKAINL 7odcA 229 :MHLLDI T0547 273 :GG 7odcA 236 :GG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37965 # 1knwA.266.218 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G273 (1knwA)G226 because Y (epsilon') conformation "forbidden" or filtered. T0547 266 :LKAINLG 1knwA 219 :LQAISAG T0547 274 :G 1knwA 227 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=37967 # 1woyA.266.280 read from T0547.t2k.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)G272 (1woyA)G287 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1woyA)F289 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINL 1woyA 281 :YRHLNV T0547 273 :G 1woyA 288 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=37969 # 1nrzA.266.98 read from T0547.t2k.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)L266 (1nrzA)I100 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1nrzA)G106 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1nrzA)M108 because D (zeta) conformation "forbidden" or filtered. T0547 267 :KAINL 1nrzA 101 :ATLNI T0547 273 :G 1nrzA 107 :G Number of specific fragments extracted= 2 number of extra gaps= 3 total=37971 # 1fobA.266.127 read from T0547.t2k.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)G272 (1fobA)G134 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1fobA)N135 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LKAINL 1fobA 128 :IEIISI T0547 274 :G 1fobA 136 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=37973 # 1xqwA.266.121 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)N270 (1xqwA)I126 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LKAI 1xqwA 122 :LKGL T0547 271 :LGGG 1xqwA 127 :VSGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37975 # 2f8lA.266.131 read from T0547.t2k.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE in next template residue (2f8lA)C127 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (2f8lA)C127 T0547 266 :LKAINL 2f8lA 120 :VSILDP T0547 274 :G 2f8lA 128 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=37977 # 1nvmB.266.97 read from T0547.t2k.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)K267 (1nvmB)R99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1nvmB)D102 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1nvmB)T104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1nvmB)P105 because G (3-10) conformation "forbidden" or filtered. T0547 266 :L 1nvmB 98 :I T0547 268 :AI 1nvmB 100 :LI T0547 271 :L 1nvmB 103 :L T0547 274 :G 1nvmB 106 :A Number of specific fragments extracted= 4 number of extra gaps= 3 total=37981 # 1v6sA.266.208 read from T0547.t2k.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)N270 (1v6sA)L213 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1v6sA)G216 because S (epsilon) conformation "forbidden" or filtered. T0547 266 :LKAI 1v6sA 209 :IDRL T0547 271 :LG 1v6sA 214 :IG T0547 274 :G 1v6sA 217 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=37984 # 1jykA.266.25 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)G272 (1jykA)A12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1jykA)G14 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINL 1jykA 6 :VKAIIL T0547 273 :G 1jykA 13 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=37986 # 1xrsA.266.230 read from T0547.t2k.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)G273 (1xrsA)S238 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINLG 1xrsA 231 :IRLCNYC T0547 274 :G 1xrsA 239 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=37988 # 1rtqA.266.88 read from T0547.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)G272 (1rtqA)G95 because Y (epsilon') conformation "forbidden" or filtered. T0547 266 :LKAINL 1rtqA 89 :DEWIVI T0547 273 :GG 1rtqA 96 :GH Number of specific fragments extracted= 2 number of extra gaps= 1 total=37990 # 1n4wA.266.30 read from T0547.t2k.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)G274 (1n4wA)L44 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINLGG 1n4wA 36 :TLMLEMGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=37991 # 1i24A.266.147 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)K267 (1i24A)H139 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1i24A)G144 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :L 1i24A 138 :C T0547 268 :AINL 1i24A 140 :LVKL T0547 273 :GG 1i24A 145 :TM Number of specific fragments extracted= 3 number of extra gaps= 2 total=37994 # 1usgA.266.193 read from T0547.t2k.many.frag # found chain 1usgA in training set Warning: unaligning (T0547)N270 (1usgA)Y198 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1usgA)G200 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1usgA)Y202 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LKAI 1usgA 194 :IDFV T0547 271 :L 1usgA 199 :Y T0547 273 :G 1usgA 201 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=37997 # 1l5oA.266.109 read from T0547.t2k.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)G272 (1l5oA)G116 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1l5oA)I117 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINL 1l5oA 110 :VHVIDV T0547 274 :G 1l5oA 118 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=37999 # 2etvA.266.176 read from T0547.t2k.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)G274 (2etvA)I197 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINLGG 2etvA 189 :SPTVYVGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=38000 # 2bfdB.266.251 read from T0547.t2k.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)A268 (2bfdB)V251 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LK 2bfdB 249 :CE T0547 269 :INLGGG 2bfdB 252 :IDLRTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=38002 # 1thfD.266.195 read from T0547.t2k.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)K267 (1thfD)P197 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1thfD)A204 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :L 1thfD 196 :L T0547 268 :AINLGG 1thfD 198 :IIASGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=38004 # 1woqA.266.214 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)A268 (1woqA)L217 because Y (epsilon') conformation "forbidden" or filtered. T0547 266 :LK 1woqA 215 :PE T0547 269 :INLGGG 1woqA 218 :FIVGGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38006 # 1iuqA.266.224 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)G274 (1iuqA)G234 because Y (epsilon') conformation "forbidden" or filtered. T0547 266 :LKAINLGG 1iuqA 226 :LIWIAPSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=38007 # 2ab0A.266.66 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 Warning: unaligning (T0547)G272 (2ab0A)P73 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINL 2ab0A 68 :DVIVL T0547 273 :GG 2ab0A 74 :GG Number of specific fragments extracted= 2 number of extra gaps= 2 total=38009 # 1e0tA.266.60 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)T67 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)T67 T0547 266 :LKAIN 1e0tA 61 :AAILL T0547 273 :GG 1e0tA 68 :KG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38011 # 1l6rA.266.62 read from T0547.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)L271 (1l6rA)E65 because L (left) conformation "forbidden" or filtered. T0547 266 :LKAIN 1l6rA 60 :GPVFG T0547 272 :GGG 1l6rA 66 :NGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38013 # 2bogX.266.212 read from T0547.t2k.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)G272 (2bogX)T219 because G (3-10) conformation "forbidden" or filtered. T0547 266 :LKAINL 2bogX 213 :LRAVID T0547 273 :GG 2bogX 220 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=38015 # 1io0A.266.94 read from T0547.t2k.many.frag # found chain 1io0A in training set Warning: unaligning (T0547)G272 (1io0A)E260 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1io0A)N262 because Y (epsilon') conformation "forbidden" or filtered. T0547 266 :LKAINL 1io0A 254 :LKSLNV T0547 273 :G 1io0A 261 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=38017 # 1kicA.266.169 read from T0547.t2k.many.frag # found chain 1kicA in training set Warning: unaligning (T0547)A268 (1kicA)E160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1kicA)M164 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LK 1kicA 158 :VE T0547 269 :INL 1kicA 161 :CVI T0547 273 :GG 1kicA 165 :GG Number of specific fragments extracted= 3 number of extra gaps= 2 total=38020 # 1q74A.266.34 read from T0547.t2k.many.frag # found chain 1q74A in training set T0547 266 :LKAINLGGG 1q74A 35 :VHVVTCTLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38021 # 2tpsA.266.172 read from T0547.t2k.many.frag # found chain 2tpsA in training set T0547 266 :LKAINLGGG 2tpsA 181 :IPIVGIGGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38022 # 2etjA.266.112 read from T0547.t2k.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)G272 (2etjA)D107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (2etjA)K109 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LKAINL 2etjA 101 :PSFVLV T0547 273 :G 2etjA 108 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=38024 # 1knwA.267.219 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 267 :KAINLGGGL 1knwA 220 :QAISAGGGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38025 # 7odcA.267.229 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K267 (7odcA)H230 because G (3-10) conformation "forbidden" or filtered. T0547 268 :AINLGGGL 7odcA 231 :LLDIGGGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=38026 # 1woyA.267.281 read from T0547.t2k.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)G272 (1woyA)G287 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1woyA)F289 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINL 1woyA 282 :RHLNV T0547 273 :G 1woyA 288 :G T0547 275 :L 1woyA 290 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=38029 # 1xqwA.267.122 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)A268 (1xqwA)G124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1xqwA)S128 because E (beta_S) conformation "forbidden" or filtered. T0547 267 :K 1xqwA 123 :K T0547 269 :INL 1xqwA 125 :LIV T0547 273 :GGL 1xqwA 129 :GGL Number of specific fragments extracted= 3 number of extra gaps= 2 total=38032 # 1rtqA.267.89 read from T0547.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)G272 (1rtqA)G95 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1rtqA)H97 because E (beta_S) conformation "forbidden" or filtered. T0547 267 :KAINL 1rtqA 90 :EWIVI T0547 273 :G 1rtqA 96 :G T0547 275 :L 1rtqA 98 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=38035 # 1jykA.267.26 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)K267 (1jykA)K7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1jykA)A12 because G (3-10) conformation "forbidden" or filtered. T0547 268 :AINL 1jykA 8 :AIIL T0547 273 :GGL 1jykA 13 :AGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=38037 # 1nrzA.267.99 read from T0547.t2k.many.frag # found chain 1nrzA in training set T0547 267 :KAINLGGGL 1nrzA 101 :ATLNIGGMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38038 # 1fobA.267.128 read from T0547.t2k.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)G272 (1fobA)G134 because S (epsilon) conformation "forbidden" or filtered. T0547 267 :KAINL 1fobA 129 :EIISI T0547 273 :GGL 1fobA 135 :NEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=38040 # 1woqA.267.215 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)A268 (1woqA)L217 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1woqA)G221 because E (beta_S) conformation "forbidden" or filtered. T0547 267 :K 1woqA 216 :E T0547 269 :INL 1woqA 218 :FIV T0547 273 :GGL 1woqA 222 :GGI Number of specific fragments extracted= 3 number of extra gaps= 2 total=38043 # 1v6sA.267.209 read from T0547.t2k.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)G272 (1v6sA)G215 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :KAINL 1v6sA 210 :DRLLI T0547 273 :GGL 1v6sA 216 :GAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=38045 # 1kicA.267.170 read from T0547.t2k.many.frag # found chain 1kicA in training set Warning: unaligning (T0547)N270 (1kicA)V162 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1kicA)M164 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAI 1kicA 159 :EEC T0547 271 :L 1kicA 163 :I T0547 273 :GGL 1kicA 165 :GGA Number of specific fragments extracted= 3 number of extra gaps= 2 total=38048 # 1uxoA.267.92 read from T0547.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)A268 (1uxoA)G92 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :K 1uxoA 91 :G T0547 269 :INLGGGL 1uxoA 93 :IILVSGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=38050 1zwxA expands to /projects/compbio/data/pdb/1zwx.pdb.gz 1zwxA:Skipped atom 152, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 154, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 156, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 641, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 643, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 645, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 647, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 649, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 943, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1281, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1283, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1961, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1963, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1965, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1967, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1981, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1983, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1985, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1987, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1989, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 2284, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 2286, because occupancy 0.500 <= existing 0.500 in 1zwxA # 1zwxA.267.187 read from T0547.t2k.many.frag # adding 1zwxA to template set # found chain 1zwxA in template set Warning: unaligning (T0547)K267 (1zwxA)E222 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1zwxA)D229 because N (gamma') conformation "forbidden" or filtered. T0547 268 :AINLGG 1zwxA 223 :IIFIGG T0547 275 :L 1zwxA 230 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=38052 # 1nvmB.267.98 read from T0547.t2k.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)G272 (1nvmB)T104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1nvmB)P105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1nvmB)A107 because L (left) conformation "forbidden" or filtered. T0547 267 :KAINL 1nvmB 99 :RLIDL T0547 274 :G 1nvmB 106 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=38054 # 2etvA.267.177 read from T0547.t2k.many.frag # found chain 2etvA in training set T0547 267 :KAINLGGGL 2etvA 190 :PTVYVGGIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38055 # 1usgA.267.194 read from T0547.t2k.many.frag # found chain 1usgA in training set T0547 267 :KAINLGGGL 1usgA 195 :DFVYYGGYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38056 # 1n4wA.267.31 read from T0547.t2k.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)A268 (1n4wA)M38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1n4wA)E40 because E (beta_S) conformation "forbidden" or filtered. T0547 267 :K 1n4wA 37 :L T0547 269 :I 1n4wA 39 :L T0547 271 :LGGGL 1n4wA 41 :MGQLW Number of specific fragments extracted= 3 number of extra gaps= 2 total=38059 # 2ab0A.267.67 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)G272 (2ab0A)P73 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (2ab0A)G74 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINL 2ab0A 68 :DVIVL T0547 274 :GL 2ab0A 75 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=38061 # 1e0tA.267.61 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L271 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)T67 Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)T67 T0547 267 :KAIN 1e0tA 62 :AILL T0547 273 :GGL 1e0tA 68 :KGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38063 # 1thfD.267.196 read from T0547.t2k.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)N270 (1thfD)A200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1thfD)G202 because S (epsilon) conformation "forbidden" or filtered. T0547 267 :KAI 1thfD 197 :PII T0547 271 :L 1thfD 201 :S T0547 273 :GGL 1thfD 203 :GAG Number of specific fragments extracted= 3 number of extra gaps= 2 total=38066 # 1zedA.267.196 read from T0547.t2k.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)L271 (1zedA)G201 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :KAIN 1zedA 197 :DVIL T0547 272 :GGGL 1zedA 202 :GGRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38068 # 1l6rA.267.63 read from T0547.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)L271 (1l6rA)E65 because L (left) conformation "forbidden" or filtered. T0547 267 :KAIN 1l6rA 61 :PVFG T0547 272 :GGGL 1l6rA 66 :NGGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=38070 # 1i24A.267.148 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)A268 (1i24A)L140 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1i24A)T145 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :K 1i24A 139 :H T0547 269 :INLG 1i24A 141 :VKLG T0547 274 :GL 1i24A 146 :MG Number of specific fragments extracted= 3 number of extra gaps= 2 total=38073 # 1zz1A.267.258 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G272 (1zz1A)G264 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1zz1A)S265 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1zz1A)G266 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINL 1zz1A 259 :QLIIV T0547 275 :L 1zz1A 267 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=38075 # 2f8lA.267.132 read from T0547.t2k.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)K267 (2f8lA)S121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE in next template residue (2f8lA)C127 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (2f8lA)C127 Warning: unaligning (T0547)G274 (2f8lA)G128 because S (epsilon) conformation "forbidden" or filtered. T0547 268 :AINL 2f8lA 122 :ILDP T0547 275 :L 2f8lA 129 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=38077 # 1xrsA.267.231 read from T0547.t2k.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)A268 (1xrsA)L233 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1xrsA)N235 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1xrsA)S238 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :K 1xrsA 232 :R T0547 269 :I 1xrsA 234 :C T0547 271 :LG 1xrsA 236 :YC T0547 274 :GL 1xrsA 239 :GL Number of specific fragments extracted= 4 number of extra gaps= 3 total=38081 # 2bogX.267.213 read from T0547.t2k.many.frag # found chain 2bogX in training set T0547 267 :KAINLGGGL 2bogX 214 :RAVIDTSRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38082 # 1gjwA.267.381 read from T0547.t2k.many.frag # found chain 1gjwA in template set Warning: unaligning (T0547)K267 (1gjwA)A382 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1gjwA)D385 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AI 1gjwA 383 :RL T0547 271 :LGGGL 1gjwA 386 :MGHAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=38084 # 1svsA.267.33 read from T0547.t2k.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)G273 (1svsA)A41 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1svsA)G42 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINLG 1svsA 35 :KLLLLG T0547 275 :L 1svsA 43 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=38086 1zkdA expands to /projects/compbio/data/pdb/1zkd.pdb.gz 1zkdA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zkdA.267.82 read from T0547.t2k.many.frag # adding 1zkdA to template set # found chain 1zkdA in template set Warning: unaligning (T0547)K267 (1zkdA)R83 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AINLGGGL 1zkdA 84 :LIEIGPGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=38087 # 1knwA.268.220 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 268 :AINLGGGLA 1knwA 221 :AISAGGGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38088 # 7odcA.268.230 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G272 (7odcA)G235 because S (epsilon) conformation "forbidden" or filtered. T0547 268 :AINL 7odcA 231 :LLDI T0547 273 :GGLA 7odcA 236 :GGFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38090 # 1xqwA.268.123 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)A268 (1xqwA)G124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1xqwA)I126 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :I 1xqwA 125 :L T0547 271 :LGGGLA 1xqwA 127 :VSGGLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=38092 # 1rtqA.268.90 read from T0547.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)G274 (1rtqA)H97 because E (beta_S) conformation "forbidden" or filtered. T0547 268 :AINLGG 1rtqA 91 :WIVIGG T0547 275 :LA 1rtqA 98 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38094 # 1woyA.268.282 read from T0547.t2k.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)G274 (1woyA)F289 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AINLGG 1woyA 283 :HLNVGG T0547 275 :LA 1woyA 290 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=38096 # 1jykA.268.27 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)G274 (1jykA)G14 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1jykA)G16 because L (left) conformation "forbidden" or filtered. T0547 268 :AINLGG 1jykA 8 :AIILAA T0547 275 :L 1jykA 15 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=38098 # 1woqA.268.216 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)A268 (1woqA)L217 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1woqA)G222 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1woqA)G223 because H (helix) conformation "forbidden" or filtered. T0547 269 :INLG 1woqA 218 :FIVG T0547 275 :LA 1woqA 224 :IS Number of specific fragments extracted= 2 number of extra gaps= 2 total=38100 # 1zwxA.268.188 read from T0547.t2k.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. T0547 268 :AINLGGGL 1zwxA 223 :IIFIGGDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38101 # 1nrzA.268.100 read from T0547.t2k.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)N270 (1nrzA)N104 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AI 1nrzA 102 :TL T0547 271 :LGGGLA 1nrzA 105 :IGGMAW Number of specific fragments extracted= 2 number of extra gaps= 1 total=38103 # 1v6sA.268.210 read from T0547.t2k.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)N270 (1v6sA)L213 because E (beta_S) conformation "forbidden" or filtered. T0547 268 :AI 1v6sA 211 :RL T0547 271 :LGGGLA 1v6sA 214 :IGGAMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38105 # 1kicA.268.171 read from T0547.t2k.many.frag # found chain 1kicA in training set Warning: unaligning (T0547)A268 (1kicA)E160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1kicA)M164 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :INL 1kicA 161 :CVI T0547 273 :GGLA 1kicA 165 :GGAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=38107 # 1uxoA.268.93 read from T0547.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)A268 (1uxoA)G92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1uxoA)V96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1uxoA)F99 because Y (epsilon') conformation "forbidden" or filtered. T0547 269 :INL 1uxoA 93 :IIL T0547 273 :GG 1uxoA 97 :SG T0547 276 :A 1uxoA 100 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=38110 # 1l6rA.268.64 read from T0547.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)L271 (1l6rA)E65 because L (left) conformation "forbidden" or filtered. T0547 268 :AIN 1l6rA 62 :VFG T0547 272 :GGGLA 1l6rA 66 :NGGIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=38112 # 1zz1A.268.259 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G272 (1zz1A)G264 because N (gamma') conformation "forbidden" or filtered. T0547 268 :AINL 1zz1A 260 :LIIV T0547 273 :GGLA 1zz1A 265 :SGFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38114 # 1fobA.268.129 read from T0547.t2k.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)G272 (1fobA)G134 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1fobA)N135 because E (beta_S) conformation "forbidden" or filtered. T0547 268 :AINL 1fobA 130 :IISI T0547 274 :GLA 1fobA 136 :EIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=38116 # 2etvA.268.178 read from T0547.t2k.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)G274 (2etvA)I197 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)G201 T0547 268 :AINLGG 2etvA 191 :TVYVGG T0547 275 :L 2etvA 198 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=38118 # 1tr9A.268.60 read from T0547.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)A276 (1tr9A)V68 because D (zeta) conformation "forbidden" or filtered. T0547 268 :AINLGGGL 1tr9A 60 :GVDQEGGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=38119 1tg7A expands to /projects/compbio/data/pdb/1tg7.pdb.gz 1tg7A:Skipped atom 187, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 189, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 193, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 4687, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 4689, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 4691, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6848, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6850, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6852, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6854, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6856, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6858, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6860, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6862, because occupancy 0.500 <= existing 0.500 in 1tg7A # 1tg7A.268.256 read from T0547.t2k.many.frag # adding 1tg7A to template set # found chain 1tg7A in template set Warning: unaligning (T0547)G272 (1tg7A)Q301 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1tg7A)G302 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1tg7A)A304 because Y (epsilon') conformation "forbidden" or filtered. T0547 268 :AINL 1tg7A 297 :LVEF T0547 274 :G 1tg7A 303 :G T0547 276 :A 1tg7A 305 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=38122 # 1zedA.268.197 read from T0547.t2k.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)L271 (1zedA)G201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1zedA)G202 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AIN 1zedA 198 :VIL T0547 273 :GGLA 1zedA 203 :GRKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38124 # 1iuqA.268.226 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)A268 (1iuqA)W228 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :INLGGGLA 1iuqA 229 :IAPSGGRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=38125 # 1xrjA.268.21 read from T0547.t2k.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)G272 (1xrjA)S26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1xrjA)A30 because L (left) conformation "forbidden" or filtered. T0547 268 :AINL 1xrjA 22 :LIGV T0547 273 :GGL 1xrjA 27 :GGT Number of specific fragments extracted= 2 number of extra gaps= 2 total=38127 1huxA expands to /projects/compbio/data/pdb/1hux.pdb.gz 1huxA:# 1huxA.268.211 read from T0547.t2k.many.frag # adding 1huxA to template set # found chain 1huxA in template set Warning: unaligning (T0547)A268 (1huxA)V212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1huxA)M214 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :I 1huxA 213 :V T0547 271 :LGGGLA 1huxA 215 :TGGVAQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=38129 # 1e19A.268.189 read from T0547.t2k.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)I269 (1e19A)A191 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1e19A)G196 because S (epsilon) conformation "forbidden" or filtered. T0547 268 :A 1e19A 190 :I T0547 270 :NLGG 1e19A 192 :SGGG T0547 275 :LA 1e19A 197 :VP Number of specific fragments extracted= 3 number of extra gaps= 2 total=38132 # 1lnsA.268.459 read from T0547.t2k.many.frag # found chain 1lnsA in template set T0547 268 :AINLGGGLA 1lnsA 460 :VLIVHGLQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38133 # 1uuyA.268.73 read from T0547.t2k.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)A268 (1uuyA)L74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1uuyA)G82 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :INLG 1uuyA 75 :ILTL T0547 274 :GL 1uuyA 80 :GT Number of specific fragments extracted= 2 number of extra gaps= 3 total=38135 # 1ezwA.268.57 read from T0547.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)G272 (1ezwA)G62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE in next template residue (1ezwA)I65 Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE at template residue (1ezwA)I65 T0547 268 :AINL 1ezwA 58 :KIKL T0547 273 :G 1ezwA 63 :P T0547 276 :A 1ezwA 66 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=38138 # 2ab0A.268.68 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)A268 (2ab0A)V69 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :INLGGGLA 2ab0A 70 :IVLPGGIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=38139 # 2tpsA.268.138 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)G273 (2tpsA)P152 because C (cis) conformation "forbidden" or filtered. T0547 268 :AINLG 2tpsA 147 :YVGLG T0547 274 :GLA 2tpsA 153 :IYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38141 # 1i24A.268.149 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)G273 (1i24A)T145 because Y (epsilon') conformation "forbidden" or filtered. T0547 268 :AINLG 1i24A 140 :LVKLG T0547 274 :GLA 1i24A 146 :MGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38143 # 1n4wA.268.32 read from T0547.t2k.many.frag # found chain 1n4wA in training set T0547 268 :AINLGGGLA 1n4wA 38 :MLEMGQLWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38144 # 1knwA.269.221 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G272 (1knwA)G225 because S (epsilon) conformation "forbidden" or filtered. T0547 269 :INL 1knwA 222 :ISA T0547 273 :GGLAV 1knwA 226 :GGLSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=38146 # 1rtqA.269.91 read from T0547.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)A276 (1rtqA)D99 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :INLGGGL 1rtqA 92 :IVIGGHL T0547 277 :V 1rtqA 100 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=38148 # 7odcA.269.231 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 269 :INLGGGLAV 7odcA 232 :LDIGGGFPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38149 # 1xqwA.269.124 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)G272 (1xqwA)S128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1xqwA)G130 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1xqwA)S132 because G (3-10) conformation "forbidden" or filtered. T0547 269 :INL 1xqwA 125 :LIV T0547 273 :G 1xqwA 129 :G T0547 275 :L 1xqwA 131 :L T0547 277 :V 1xqwA 133 :S Number of specific fragments extracted= 4 number of extra gaps= 3 total=38153 # 1zwxA.269.189 read from T0547.t2k.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G272 (1zwxA)G227 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1zwxA)D229 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. T0547 269 :INL 1zwxA 224 :IFI T0547 273 :G 1zwxA 228 :G T0547 275 :L 1zwxA 230 :L T0547 277 :V 1zwxA 232 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=38157 # 1jykA.269.28 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)G272 (1jykA)A12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1jykA)G16 because L (left) conformation "forbidden" or filtered. T0547 269 :INL 1jykA 9 :IIL T0547 273 :GGL 1jykA 13 :AGL T0547 277 :V 1jykA 17 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=38160 # 1l6rA.269.65 read from T0547.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)L271 (1l6rA)E65 because L (left) conformation "forbidden" or filtered. T0547 269 :IN 1l6rA 63 :FG T0547 272 :GGGLAV 1l6rA 66 :NGGIMF Number of specific fragments extracted= 2 number of extra gaps= 1 total=38162 # 1woyA.269.283 read from T0547.t2k.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)G272 (1woyA)G287 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :INL 1woyA 284 :LNV T0547 273 :GGLAV 1woyA 288 :GFLLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38164 # 1woqA.269.217 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)G272 (1woqA)G221 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :INL 1woqA 218 :FIV T0547 273 :GGLAV 1woqA 222 :GGISK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38166 # 1uxoA.269.94 read from T0547.t2k.many.frag # found chain 1uxoA in training set T0547 269 :INLGGGLAV 1uxoA 93 :IILVSGFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38167 # 1v6sA.269.211 read from T0547.t2k.many.frag # found chain 1v6sA in training set T0547 269 :INLGGGLAV 1v6sA 212 :LLIGGAMAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38168 # 1tr9A.269.61 read from T0547.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)A276 (1tr9A)V68 because D (zeta) conformation "forbidden" or filtered. T0547 269 :INLGGGL 1tr9A 61 :VDQEGGR T0547 277 :V 1tr9A 69 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=38170 # 1e19A.269.190 read from T0547.t2k.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)N270 (1e19A)S192 because L (left) conformation "forbidden" or filtered. T0547 269 :I 1e19A 191 :A T0547 271 :LGGGLAV 1e19A 193 :GGGGVPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=38172 # 1kicA.269.172 read from T0547.t2k.many.frag # found chain 1kicA in training set Warning: unaligning (T0547)G273 (1kicA)G165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1kicA)D169 because G (3-10) conformation "forbidden" or filtered. T0547 269 :INLG 1kicA 161 :CVIM T0547 274 :GLA 1kicA 166 :GAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=38174 # 1nrzA.269.101 read from T0547.t2k.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)G274 (1nrzA)M108 because D (zeta) conformation "forbidden" or filtered. T0547 269 :INLGG 1nrzA 103 :LNIGG T0547 275 :LAV 1nrzA 109 :AWR Number of specific fragments extracted= 2 number of extra gaps= 1 total=38176 # 1tg7A.269.257 read from T0547.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)G272 (1tg7A)Q301 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1tg7A)G302 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1tg7A)G303 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1tg7A)A304 because Y (epsilon') conformation "forbidden" or filtered. T0547 269 :INL 1tg7A 298 :VEF T0547 276 :AV 1tg7A 305 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38178 # 1zedA.269.198 read from T0547.t2k.many.frag # found chain 1zedA in training set T0547 269 :INLGGGLAV 1zedA 199 :ILGGGRKYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=38179 # 1zz1A.269.260 read from T0547.t2k.many.frag # found chain 1zz1A in training set T0547 269 :INLGGGLAV 1zz1A 261 :IIVGSGFDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38180 # 1iuqA.269.227 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 269 :INLGGGLAV 1iuqA 229 :IAPSGGRDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38181 # 1ezwA.269.58 read from T0547.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)G273 (1ezwA)P63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE in next template residue (1ezwA)I65 Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE at template residue (1ezwA)I65 T0547 269 :INLG 1ezwA 59 :IKLG T0547 276 :AV 1ezwA 66 :TN Number of specific fragments extracted= 2 number of extra gaps= 1 total=38183 # 2tpsA.269.139 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)G272 (2tpsA)G151 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (2tpsA)P152 because C (cis) conformation "forbidden" or filtered. T0547 269 :INL 2tpsA 148 :VGL T0547 274 :GLAV 2tpsA 153 :IYPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=38185 # 1xrjA.269.22 read from T0547.t2k.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)N270 (1xrjA)G24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1xrjA)G27 because Y (epsilon') conformation "forbidden" or filtered. T0547 269 :I 1xrjA 23 :I T0547 271 :LG 1xrjA 25 :VS T0547 274 :GLAV 1xrjA 28 :GTAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=38188 # 1huxA.269.212 read from T0547.t2k.many.frag # found chain 1huxA in template set Warning: unaligning (T0547)G272 (1huxA)G216 because S (epsilon) conformation "forbidden" or filtered. T0547 269 :INL 1huxA 213 :VMT T0547 273 :GGLAV 1huxA 217 :GVAQN Number of specific fragments extracted= 2 number of extra gaps= 1 total=38190 1h5rA expands to /projects/compbio/data/pdb/1h5r.pdb.gz 1h5rA:# 1h5rA.269.6 read from T0547.t2k.many.frag # adding 1h5rA to template set # found chain 1h5rA in template set T0547 269 :INLGGGLAV 1h5rA 7 :IILAGGSGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38191 # 2etvA.269.179 read from T0547.t2k.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)G201 T0547 269 :INLGGGL 2etvA 192 :VYVGGIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38192 # 1fp2A.269.192 read from T0547.t2k.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)G274 (1fp2A)G198 because S (epsilon) conformation "forbidden" or filtered. T0547 269 :INLGG 1fp2A 193 :VDVGG T0547 275 :LAV 1fp2A 199 :TGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=38194 # 1fobA.269.130 read from T0547.t2k.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)G273 (1fobA)N135 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1fobA)A139 because G (3-10) conformation "forbidden" or filtered. T0547 269 :INLG 1fobA 131 :ISIG T0547 274 :GLA 1fobA 136 :EIR Number of specific fragments extracted= 2 number of extra gaps= 2 total=38196 1ssxA expands to /projects/compbio/data/pdb/1ssx.pdb.gz 1ssxA:Skipped atom 231, because occupancy 0.160 <= existing 0.840 in 1ssxA Skipped atom 235, because occupancy 0.160 <= existing 0.840 in 1ssxA Skipped atom 237, because occupancy 0.160 <= existing 0.840 in 1ssxA Skipped atom 510, because occupancy 0.160 <= existing 0.840 in 1ssxA Skipped atom 514, because occupancy 0.160 <= existing 0.840 in 1ssxA Skipped atom 516, because occupancy 0.160 <= existing 0.840 in 1ssxA Skipped atom 771, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 775, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 777, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 779, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 781, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 783, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 785, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 787, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 971, because occupancy 0.220 <= existing 0.780 in 1ssxA Skipped atom 973, because occupancy 0.220 <= existing 0.780 in 1ssxA Skipped atom 975, because occupancy 0.220 <= existing 0.780 in 1ssxA Skipped atom 977, because occupancy 0.220 <= existing 0.780 in 1ssxA Skipped atom 979, because occupancy 0.220 <= existing 0.780 in 1ssxA Skipped atom 981, because occupancy 0.220 <= existing 0.780 in 1ssxA Skipped atom 1025, because occupancy 0.160 <= existing 0.840 in 1ssxA Skipped atom 1029, because occupancy 0.160 <= existing 0.840 in 1ssxA Skipped atom 1031, because occupancy 0.160 <= existing 0.840 in 1ssxA Skipped atom 1134, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 1138, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 1140, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 1142, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 1144, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 1146, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 1148, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 1150, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 1225, because occupancy 0.380 <= existing 0.620 in 1ssxA Skipped atom 1229, because occupancy 0.380 <= existing 0.620 in 1ssxA Skipped atom 1231, because occupancy 0.380 <= existing 0.620 in 1ssxA Skipped atom 1241, because occupancy 0.430 <= existing 0.570 in 1ssxA Skipped atom 1245, because occupancy 0.430 <= existing 0.570 in 1ssxA Skipped atom 1247, because occupancy 0.430 <= existing 0.570 in 1ssxA Skipped atom 1379, because occupancy 0.320 <= existing 0.680 in 1ssxA Skipped atom 1383, because occupancy 0.320 <= existing 0.680 in 1ssxA Skipped atom 1385, because occupancy 0.320 <= existing 0.680 in 1ssxA Skipped atom 1387, because occupancy 0.320 <= existing 0.680 in 1ssxA Skipped atom 1389, because occupancy 0.320 <= existing 0.680 in 1ssxA Skipped atom 1391, because occupancy 0.320 <= existing 0.680 in 1ssxA Skipped atom 1535, because occupancy 0.250 <= existing 0.750 in 1ssxA Skipped atom 1537, because occupancy 0.250 <= existing 0.750 in 1ssxA Skipped atom 1539, because occupancy 0.250 <= existing 0.750 in 1ssxA Skipped atom 1541, because occupancy 0.250 <= existing 0.750 in 1ssxA Skipped atom 1543, because occupancy 0.250 <= existing 0.750 in 1ssxA Skipped atom 1545, because occupancy 0.250 <= existing 0.750 in 1ssxA Skipped atom 1547, because occupancy 0.250 <= existing 0.750 in 1ssxA Skipped atom 1549, because occupancy 0.250 <= existing 0.750 in 1ssxA Skipped atom 1551, because occupancy 0.250 <= existing 0.750 in 1ssxA Skipped atom 1553, because occupancy 0.250 <= existing 0.750 in 1ssxA Skipped atom 1555, because occupancy 0.250 <= existing 0.750 in 1ssxA Skipped atom 1674, because occupancy 0.390 <= existing 0.610 in 1ssxA Skipped atom 1678, because occupancy 0.390 <= existing 0.610 in 1ssxA Skipped atom 1680, because occupancy 0.390 <= existing 0.610 in 1ssxA Skipped atom 1682, because occupancy 0.390 <= existing 0.610 in 1ssxA Skipped atom 1972, because occupancy 0.300 <= existing 0.700 in 1ssxA Skipped atom 1976, because occupancy 0.300 <= existing 0.700 in 1ssxA Skipped atom 1978, because occupancy 0.300 <= existing 0.700 in 1ssxA Skipped atom 1980, because occupancy 0.300 <= existing 0.700 in 1ssxA Skipped atom 1982, because occupancy 0.300 <= existing 0.700 in 1ssxA Skipped atom 1984, because occupancy 0.300 <= existing 0.700 in 1ssxA Skipped atom 2033, because occupancy 0.130 <= existing 0.870 in 1ssxA Skipped atom 2037, because occupancy 0.130 <= existing 0.870 in 1ssxA Skipped atom 2039, because occupancy 0.130 <= existing 0.870 in 1ssxA Skipped atom 2049, because occupancy 0.210 <= existing 0.640 in 1ssxA Skipped atom 2050, because occupancy 0.150 <= existing 0.640 in 1ssxA Skipped atom 2054, because occupancy 0.210 <= existing 0.640 in 1ssxA Skipped atom 2055, because occupancy 0.150 <= existing 0.640 in 1ssxA Skipped atom 2057, because occupancy 0.210 <= existing 0.640 in 1ssxA Skipped atom 2058, because occupancy 0.150 <= existing 0.640 in 1ssxA Skipped atom 2060, because occupancy 0.210 <= existing 0.640 in 1ssxA Skipped atom 2061, because occupancy 0.150 <= existing 0.640 in 1ssxA Skipped atom 2063, because occupancy 0.210 <= existing 0.640 in 1ssxA Skipped atom 2064, because occupancy 0.150 <= existing 0.640 in 1ssxA Skipped atom 2099, because occupancy 0.320 <= existing 0.470 in 1ssxA Skipped atom 2100, because occupancy 0.220 <= existing 0.470 in 1ssxA Skipped atom 2104, because occupancy 0.320 <= existing 0.470 in 1ssxA Skipped atom 2105, because occupancy 0.220 <= existing 0.470 in 1ssxA Skipped atom 2107, because occupancy 0.320 <= existing 0.470 in 1ssxA Skipped atom 2108, because occupancy 0.220 <= existing 0.470 in 1ssxA Skipped atom 2110, because occupancy 0.320 <= existing 0.470 in 1ssxA Skipped atom 2111, because occupancy 0.220 <= existing 0.470 in 1ssxA Skipped atom 2113, because occupancy 0.320 <= existing 0.470 in 1ssxA Skipped atom 2114, because occupancy 0.220 <= existing 0.470 in 1ssxA Skipped atom 2116, because occupancy 0.320 <= existing 0.470 in 1ssxA Skipped atom 2117, because occupancy 0.220 <= existing 0.470 in 1ssxA Skipped atom 2119, because occupancy 0.320 <= existing 0.470 in 1ssxA Skipped atom 2120, because occupancy 0.220 <= existing 0.470 in 1ssxA Skipped atom 2122, because occupancy 0.320 <= existing 0.470 in 1ssxA Skipped atom 2123, because occupancy 0.220 <= existing 0.470 in 1ssxA Skipped atom 2181, because occupancy 0.300 <= existing 0.700 in 1ssxA Skipped atom 2183, because occupancy 0.300 <= existing 0.700 in 1ssxA Skipped atom 2185, because occupancy 0.300 <= existing 0.700 in 1ssxA Skipped atom 2187, because occupancy 0.300 <= existing 0.700 in 1ssxA Skipped atom 2189, because occupancy 0.300 <= existing 0.700 in 1ssxA Skipped atom 2191, because occupancy 0.300 <= existing 0.700 in 1ssxA Skipped atom 2283, because occupancy 0.380 <= existing 0.620 in 1ssxA Skipped atom 2285, because occupancy 0.380 <= existing 0.620 in 1ssxA Skipped atom 2287, because occupancy 0.380 <= existing 0.620 in 1ssxA Skipped atom 2289, because occupancy 0.380 <= existing 0.620 in 1ssxA Skipped atom 2291, because occupancy 0.380 <= existing 0.620 in 1ssxA Skipped atom 2293, because occupancy 0.380 <= existing 0.620 in 1ssxA Skipped atom 2387, because occupancy 0.150 <= existing 0.850 in 1ssxA Skipped atom 2389, because occupancy 0.150 <= existing 0.850 in 1ssxA Skipped atom 2391, because occupancy 0.150 <= existing 0.850 in 1ssxA Skipped atom 2393, because occupancy 0.150 <= existing 0.850 in 1ssxA Skipped atom 2395, because occupancy 0.150 <= existing 0.850 in 1ssxA Skipped atom 2397, because occupancy 0.150 <= existing 0.850 in 1ssxA Skipped atom 2399, because occupancy 0.150 <= existing 0.850 in 1ssxA Skipped atom 2401, because occupancy 0.150 <= existing 0.850 in 1ssxA Skipped atom 2494, because occupancy 0.310 <= existing 0.690 in 1ssxA Skipped atom 2498, because occupancy 0.310 <= existing 0.690 in 1ssxA Skipped atom 2500, because occupancy 0.310 <= existing 0.690 in 1ssxA Skipped atom 2559, because occupancy 0.130 <= existing 0.870 in 1ssxA Skipped atom 2563, because occupancy 0.130 <= existing 0.870 in 1ssxA Skipped atom 2565, because occupancy 0.130 <= existing 0.870 in 1ssxA Skipped atom 2636, because occupancy 0.240 <= existing 0.760 in 1ssxA Skipped atom 2640, because occupancy 0.240 <= existing 0.760 in 1ssxA Skipped atom 2642, because occupancy 0.240 <= existing 0.760 in 1ssxA Skipped atom 2644, because occupancy 0.240 <= existing 0.760 in 1ssxA Skipped atom 2646, because occupancy 0.240 <= existing 0.760 in 1ssxA Skipped atom 2648, because occupancy 0.240 <= existing 0.760 in 1ssxA Skipped atom 2889, because occupancy 0.430 <= existing 0.570 in 1ssxA Skipped atom 2893, because occupancy 0.430 <= existing 0.570 in 1ssxA Skipped atom 2895, because occupancy 0.430 <= existing 0.570 in 1ssxA Skipped atom 2897, because occupancy 0.430 <= existing 0.570 in 1ssxA Skipped atom 2899, because occupancy 0.430 <= existing 0.570 in 1ssxA Skipped atom 2901, because occupancy 0.430 <= existing 0.570 in 1ssxA Skipped atom 2976, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 2980, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 2982, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 2984, because occupancy 0.440 <= existing 0.560 in 1ssxA Skipped atom 2986, because occupancy 0.440 <= existing 0.560 in 1ssxA # 1ssxA.269.0 read from T0547.t2k.many.frag # adding 1ssxA to template set # found chain 1ssxA in template set Warning: unaligning (T0547)I269 because first residue in template chain is (1ssxA)A15A Warning: unaligning (T0547)N270 (1ssxA)N15B because P (beta_P) conformation "forbidden" or filtered. T0547 271 :LGGGLAV 1ssxA 16 :IVGGIEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38197 # 1bouB.269.186 read from T0547.t2k.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)G272 (1bouB)T190 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE in next template residue (1bouB)M193 Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE at template residue (1bouB)M193 Warning: unaligning (T0547)V277 (1bouB)H195 because Y (epsilon') conformation "forbidden" or filtered. T0547 269 :INL 1bouB 187 :VWG T0547 273 :G 1bouB 191 :G T0547 276 :A 1bouB 194 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=38200 # 1w8kA.269.79 read from T0547.t2k.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)G273 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w8kA)G124 T0547 274 :GLAV 1w8kA 125 :GFAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38201 # 1knwA.270.222 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 270 :NLGGGLAVE 1knwA 223 :SAGGGLSVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38202 # 1rtqA.270.92 read from T0547.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)E278 (1rtqA)T101 because Y (epsilon') conformation "forbidden" or filtered. T0547 270 :NLGGGLAV 1rtqA 93 :VIGGHLDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=38203 # 7odcA.270.232 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G272 (7odcA)G235 because S (epsilon) conformation "forbidden" or filtered. T0547 270 :NL 7odcA 233 :DI T0547 273 :GGLAVE 7odcA 236 :GGFPGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=38205 # 1zwxA.270.190 read from T0547.t2k.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G273 (1zwxA)G228 because S (epsilon) conformation "forbidden" or filtered. T0547 270 :NLG 1zwxA 225 :FIG T0547 274 :GLAVE 1zwxA 229 :DLNVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=38207 # 1l6rA.270.66 read from T0547.t2k.many.frag # found chain 1l6rA in training set T0547 270 :NLGGGLAVE 1l6rA 64 :GENGGIMFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38208 # 1xqwA.270.125 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)G274 (1xqwA)G130 because P (beta_P) conformation "forbidden" or filtered. T0547 270 :NLGG 1xqwA 126 :IVSG T0547 275 :LAVE 1xqwA 131 :LSSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=38210 # 1woqA.270.218 read from T0547.t2k.many.frag # found chain 1woqA in training set T0547 270 :NLGGGLAVE 1woqA 219 :IVGGGISKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38211 # 1jykA.270.29 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)G272 (1jykA)A12 because G (3-10) conformation "forbidden" or filtered. T0547 270 :NL 1jykA 10 :IL T0547 273 :GGLAVE 1jykA 13 :AGLGTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=38213 # 1e19A.270.191 read from T0547.t2k.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)N270 (1e19A)S192 because L (left) conformation "forbidden" or filtered. T0547 271 :LGGGLAVE 1e19A 193 :GGGGVPVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=38214 # 1uxoA.270.95 read from T0547.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)L275 (1uxoA)F99 because Y (epsilon') conformation "forbidden" or filtered. T0547 270 :NLGGG 1uxoA 94 :ILVSG T0547 276 :AVE 1uxoA 100 :AKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=38216 # 1woyA.270.284 read from T0547.t2k.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)G273 (1woyA)G288 because P (beta_P) conformation "forbidden" or filtered. T0547 270 :NLG 1woyA 285 :NVG T0547 274 :GLAVE 1woyA 289 :FLLGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38218 # 2tpsA.270.140 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)G272 (2tpsA)G151 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (2tpsA)P152 because C (cis) conformation "forbidden" or filtered. T0547 270 :NL 2tpsA 149 :GL T0547 274 :GLAVE 2tpsA 153 :IYPTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38220 # 1tr9A.270.62 read from T0547.t2k.many.frag # found chain 1tr9A in training set T0547 270 :NLGGGLAVE 1tr9A 62 :DQEGGRVQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38221 # 1ezwA.270.59 read from T0547.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)G273 (1ezwA)P63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE in next template residue (1ezwA)I65 Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE at template residue (1ezwA)I65 T0547 270 :NLG 1ezwA 60 :KLG T0547 276 :AVE 1ezwA 66 :TNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38223 # 1iuqA.270.228 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 270 :NLGGGLAVE 1iuqA 230 :APSGGRDRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38224 # 1tg7A.270.258 read from T0547.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)G272 (1tg7A)Q301 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1tg7A)G302 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1tg7A)A304 because Y (epsilon') conformation "forbidden" or filtered. T0547 270 :NL 1tg7A 299 :EF T0547 274 :G 1tg7A 303 :G T0547 276 :AVE 1tg7A 305 :FDP Number of specific fragments extracted= 3 number of extra gaps= 2 total=38227 # 1zz1A.270.261 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)A276 (1zz1A)D268 because G (3-10) conformation "forbidden" or filtered. T0547 270 :NLGGGL 1zz1A 262 :IVGSGF T0547 277 :VE 1zz1A 269 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=38229 # 1v6sA.270.212 read from T0547.t2k.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)G273 (1v6sA)G216 because S (epsilon) conformation "forbidden" or filtered. T0547 270 :NLG 1v6sA 213 :LIG T0547 274 :GLAVE 1v6sA 217 :AMAFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=38231 # 1zedA.270.199 read from T0547.t2k.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)L271 (1zedA)G201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1zedA)Y206 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1zedA)M207 because G (3-10) conformation "forbidden" or filtered. T0547 270 :N 1zedA 200 :L T0547 272 :GGGL 1zedA 202 :GGRK T0547 278 :E 1zedA 208 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=38234 # 1h5rA.270.7 read from T0547.t2k.many.frag # found chain 1h5rA in template set Warning: unaligning (T0547)G272 (1h5rA)A10 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1h5rA)G11 because Y (epsilon') conformation "forbidden" or filtered. T0547 270 :NL 1h5rA 8 :IL T0547 274 :GLAVE 1h5rA 12 :GSGTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=38236 # 1vkpA.270.160 read from T0547.t2k.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)G274 (1vkpA)S165 because G (3-10) conformation "forbidden" or filtered. T0547 270 :NLGG 1vkpA 161 :LEGG T0547 275 :LAVE 1vkpA 166 :IHVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38238 # 1kicA.270.173 read from T0547.t2k.many.frag # found chain 1kicA in training set T0547 270 :NLGGGLAVE 1kicA 162 :VIMGGAVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38239 # 1w8kA.270.80 read from T0547.t2k.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)G273 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w8kA)G124 Warning: unaligning (T0547)G274 (1w8kA)G125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 because of BadResidue code BAD_PEPTIDE in next template residue (1w8kA)N130 T0547 275 :LAV 1w8kA 126 :FAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=38240 # 1ssxA.270.1 read from T0547.t2k.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)N270 (1ssxA)N15B because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1ssxA)V17 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1ssxA)G18 because P (beta_P) conformation "forbidden" or filtered. T0547 271 :L 1ssxA 16 :I T0547 274 :GLAVE 1ssxA 19 :GIEYS Number of specific fragments extracted= 2 number of extra gaps= 2 total=38242 # 1nrzA.270.102 read from T0547.t2k.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)G272 (1nrzA)G106 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1nrzA)M108 because D (zeta) conformation "forbidden" or filtered. T0547 270 :NL 1nrzA 104 :NI T0547 273 :G 1nrzA 107 :G T0547 275 :LAVE 1nrzA 109 :AWRP Number of specific fragments extracted= 3 number of extra gaps= 2 total=38245 # 1bouB.270.187 read from T0547.t2k.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE in next template residue (1bouB)M193 Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE at template residue (1bouB)M193 Warning: unaligning (T0547)E278 (1bouB)Q196 because E (beta_S) conformation "forbidden" or filtered. T0547 270 :NLGG 1bouB 188 :WGTG T0547 276 :AV 1bouB 194 :SH Number of specific fragments extracted= 2 number of extra gaps= 2 total=38247 # 1jovA.270.67 read from T0547.t2k.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)G274 (1jovA)G72 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1jovA)C76 because P (beta_P) conformation "forbidden" or filtered. T0547 270 :NLGG 1jovA 68 :AIRG T0547 275 :LAV 1jovA 73 :VPI Number of specific fragments extracted= 2 number of extra gaps= 2 total=38249 # 2a1rA.270.25 read from T0547.t2k.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)N270 (2a1rA)A26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (2a1rA)D28 because Y (epsilon') conformation "forbidden" or filtered. T0547 271 :L 2a1rA 27 :I T0547 273 :GGLAVE 2a1rA 29 :GEFSGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=38251 # 2etvA.270.180 read from T0547.t2k.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)G201 Warning: unaligning (T0547)E278 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2etvA)G201 T0547 270 :NLGGGL 2etvA 193 :YVGGIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38252 # 1vjoA.270.197 read from T0547.t2k.many.frag # found chain 1vjoA in training set T0547 270 :NLGGGLAVE 1vjoA 186 :TSLGGVPIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38253 # 1knwA.271.223 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G273 (1knwA)G226 because Y (epsilon') conformation "forbidden" or filtered. T0547 271 :LG 1knwA 224 :AG T0547 274 :GLAVEY 1knwA 227 :GLSVPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38255 # 1zwxA.271.191 read from T0547.t2k.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)E278 (1zwxA)N233 because P (beta_P) conformation "forbidden" or filtered. T0547 271 :LGGGLAV 1zwxA 226 :IGGDLNV T0547 279 :Y 1zwxA 234 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=38257 # 1l6rA.271.67 read from T0547.t2k.many.frag # found chain 1l6rA in training set T0547 271 :LGGGLAVEY 1l6rA 65 :ENGGIMFDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38258 # 1rtqA.271.93 read from T0547.t2k.many.frag # found chain 1rtqA in training set T0547 271 :LGGGLAVEY 1rtqA 94 :IGGHLDSTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38259 # 1jykA.271.30 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)A276 (1jykA)G16 because L (left) conformation "forbidden" or filtered. T0547 271 :LGGGL 1jykA 11 :LAAGL T0547 277 :VEY 1jykA 17 :TRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=38261 # 7odcA.271.233 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G273 (7odcA)G236 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (7odcA)P239 because P (beta_P) conformation "forbidden" or filtered. T0547 271 :LG 7odcA 234 :IG T0547 274 :GL 7odcA 237 :GF T0547 277 :VEY 7odcA 240 :GSE Number of specific fragments extracted= 3 number of extra gaps= 2 total=38264 # 1woqA.271.219 read from T0547.t2k.many.frag # found chain 1woqA in training set T0547 271 :LGGGLAVEY 1woqA 220 :VGGGISKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38265 # 1iuqA.271.229 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)E278 (1iuqA)P238 because P (beta_P) conformation "forbidden" or filtered. T0547 271 :LGGGLAV 1iuqA 231 :PSGGRDR T0547 279 :Y 1iuqA 239 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=38267 # 1e19A.271.192 read from T0547.t2k.many.frag # found chain 1e19A in training set T0547 271 :LGGGLAVEY 1e19A 193 :GGGGVPVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38268 # 1ezwA.271.60 read from T0547.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)G272 (1ezwA)G62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1ezwA)P63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE in next template residue (1ezwA)I65 Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE at template residue (1ezwA)I65 T0547 271 :L 1ezwA 61 :L T0547 276 :AVEY 1ezwA 66 :TNPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38270 # 1xqwA.271.126 read from T0547.t2k.many.frag # found chain 1xqwA in template set T0547 271 :LGGGLAVEY 1xqwA 127 :VSGGLSSVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38271 # 2tpsA.271.141 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)G273 (2tpsA)P152 because C (cis) conformation "forbidden" or filtered. T0547 271 :LG 2tpsA 150 :LG T0547 274 :GLAVEY 2tpsA 153 :IYPTET Number of specific fragments extracted= 2 number of extra gaps= 1 total=38273 # 1vjoA.271.198 read from T0547.t2k.many.frag # found chain 1vjoA in training set T0547 271 :LGGGLAVEY 1vjoA 187 :SLGGVPIFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38274 # 1uxoA.271.96 read from T0547.t2k.many.frag # found chain 1uxoA in training set T0547 271 :LGGGLAVEY 1uxoA 95 :LVSGFAKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38275 # 1tr9A.271.63 read from T0547.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)G273 (1tr9A)G65 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1tr9A)G66 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1tr9A)V68 because D (zeta) conformation "forbidden" or filtered. T0547 271 :LG 1tr9A 63 :QE T0547 275 :L 1tr9A 67 :R T0547 277 :VEY 1tr9A 69 :QRF Number of specific fragments extracted= 3 number of extra gaps= 2 total=38278 # 1vkpA.271.161 read from T0547.t2k.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)Y279 (1vkpA)G170 because T (delta_L) conformation "forbidden" or filtered. T0547 271 :LGGGLAVE 1vkpA 162 :EGGSIHVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=38279 # 2bjfA.271.0 read from T0547.t2k.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)G272 because first residue in template chain is (2bjfA)C2 Warning: unaligning (T0547)G273 (2bjfA)T3 because E (beta_S) conformation "forbidden" or filtered. T0547 274 :GLAVEY 2bjfA 4 :GLALET Number of specific fragments extracted= 1 number of extra gaps= 0 total=38280 # 1jovA.271.68 read from T0547.t2k.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)G272 (1jovA)R70 because N (gamma') conformation "forbidden" or filtered. T0547 271 :L 1jovA 69 :I T0547 273 :GGLAVEY 1jovA 71 :GGVPICY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38282 # 1zz1A.271.262 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G272 (1zz1A)G264 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1zz1A)S265 because N (gamma') conformation "forbidden" or filtered. T0547 271 :L 1zz1A 263 :V T0547 274 :GLAVEY 1zz1A 266 :GFDASM Number of specific fragments extracted= 2 number of extra gaps= 1 total=38284 2bg1A expands to /projects/compbio/data/pdb/2bg1.pdb.gz 2bg1A:# 2bg1A.271.258 read from T0547.t2k.many.frag # adding 2bg1A to template set # found chain 2bg1A in template set T0547 271 :LGGGLAVEY 2bg1A 556 :MGGGIEVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38285 # 1tg7A.271.259 read from T0547.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)L275 (1tg7A)A304 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1tg7A)F305 because P (beta_P) conformation "forbidden" or filtered. T0547 271 :LGGG 1tg7A 300 :FQGG T0547 277 :VEY 1tg7A 306 :DPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=38287 # 1w8kA.271.81 read from T0547.t2k.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)G273 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w8kA)G124 Warning: unaligning (T0547)E278 because of BadResidue code BAD_PEPTIDE in next template residue (1w8kA)N130 Warning: unaligning (T0547)Y279 because of BadResidue code BAD_PEPTIDE at template residue (1w8kA)N130 T0547 274 :GLAV 1w8kA 125 :GFAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=38288 # 1khxA.271.91 read from T0547.t2k.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)E278 (1khxA)Y339 because Y (epsilon') conformation "forbidden" or filtered. T0547 271 :LGGGLAV 1khxA 332 :IGRGVRL T0547 279 :Y 1khxA 340 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=38290 # 1ssxA.271.2 read from T0547.t2k.many.frag # found chain 1ssxA in template set T0547 271 :LGGGLAVEY 1ssxA 16 :IVGGIEYSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38291 # 1iu8A.271.157 read from T0547.t2k.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)G272 (1iu8A)A159 because Y (epsilon') conformation "forbidden" or filtered. T0547 271 :L 1iu8A 158 :I T0547 273 :GGLAVEY 1iu8A 160 :GFIHVPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38293 # 1eu1A.271.349 read from T0547.t2k.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)G274 (1eu1A)G353 because S (epsilon) conformation "forbidden" or filtered. T0547 271 :LGG 1eu1A 350 :PGG T0547 275 :LAVEY 1eu1A 354 :FGLSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38295 # 1h5rA.271.8 read from T0547.t2k.many.frag # found chain 1h5rA in template set Warning: unaligning (T0547)G272 (1h5rA)A10 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1h5rA)G12 because S (epsilon) conformation "forbidden" or filtered. T0547 271 :L 1h5rA 9 :L T0547 273 :G 1h5rA 11 :G T0547 275 :LAVEY 1h5rA 13 :SGTRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=38298 1c4rA expands to /projects/compbio/data/pdb/1c4r.pdb.gz 1c4rA:# 1c4rA.271.11 read from T0547.t2k.many.frag # adding 1c4rA to template set # found chain 1c4rA in template set Warning: unaligning (T0547)L271 (1c4rA)G92 because T (delta_L) conformation "forbidden" or filtered. T0547 272 :GGGLAVEY 1c4rA 93 :GGQITYKW Number of specific fragments extracted= 1 number of extra gaps= 1 total=38299 # 1tr9A.271.162 read from T0547.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)G272 (1tr9A)P163 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1tr9A)H165 because G (3-10) conformation "forbidden" or filtered. T0547 271 :L 1tr9A 162 :F T0547 273 :G 1tr9A 164 :G T0547 275 :LAVEY 1tr9A 166 :GAVIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=38302 1txvA expands to /projects/compbio/data/pdb/1txv.pdb.gz 1txvA:# 1txvA.271.49 read from T0547.t2k.many.frag # adding 1txvA to template set # found chain 1txvA in template set T0547 271 :LGGGLAVEY 1txvA 50 :TGGVFLCPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=38303 # 1knwA.272.224 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G272 (1knwA)G225 because S (epsilon) conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 1knwA 226 :GGLSVPYQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=38304 # 1zwxA.272.192 read from T0547.t2k.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G274 (1zwxA)D229 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. T0547 272 :GG 1zwxA 227 :GG T0547 275 :L 1zwxA 230 :L T0547 277 :VEYS 1zwxA 232 :VNYG Number of specific fragments extracted= 3 number of extra gaps= 2 total=38307 # 1l6rA.272.68 read from T0547.t2k.many.frag # found chain 1l6rA in training set T0547 272 :GGGLAVEYS 1l6rA 66 :NGGIMFDND Number of specific fragments extracted= 1 number of extra gaps= 0 total=38308 # 1jykA.272.31 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)G274 (1jykA)G14 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1jykA)G16 because L (left) conformation "forbidden" or filtered. T0547 272 :GG 1jykA 12 :AA T0547 275 :L 1jykA 15 :L T0547 277 :VEYS 1jykA 17 :TRLR Number of specific fragments extracted= 3 number of extra gaps= 2 total=38311 # 1rtqA.272.94 read from T0547.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)E278 (1rtqA)T101 because Y (epsilon') conformation "forbidden" or filtered. T0547 272 :GGGLAV 1rtqA 95 :GGHLDS T0547 279 :YS 1rtqA 102 :IG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38313 # 1iuqA.272.230 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)G274 (1iuqA)G234 because Y (epsilon') conformation "forbidden" or filtered. T0547 272 :GG 1iuqA 232 :SG T0547 275 :LAVEYS 1iuqA 235 :RDRPDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38315 # 1ezwA.272.61 read from T0547.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE in next template residue (1ezwA)I65 Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE at template residue (1ezwA)I65 T0547 272 :GG 1ezwA 62 :GP T0547 276 :AVEYS 1ezwA 66 :TNPYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=38317 # 1vjoA.272.199 read from T0547.t2k.many.frag # found chain 1vjoA in training set Warning: unaligning (T0547)G272 (1vjoA)L188 because P (beta_P) conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 1vjoA 189 :GGVPIFLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=38318 # 1e19A.272.193 read from T0547.t2k.many.frag # found chain 1e19A in training set T0547 272 :GGGLAVEYS 1e19A 194 :GGGVPVILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38319 # 2bjfA.272.1 read from T0547.t2k.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)G272 because first residue in template chain is (2bjfA)C2 T0547 273 :GGLAVEYS 2bjfA 3 :TGLALETK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38320 # 7odcA.272.234 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G272 (7odcA)G235 because S (epsilon) conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 7odcA 236 :GGFPGSED Number of specific fragments extracted= 1 number of extra gaps= 1 total=38321 # 1woqA.272.220 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)G272 (1woqA)G221 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1woqA)G223 because H (helix) conformation "forbidden" or filtered. T0547 273 :G 1woqA 222 :G T0547 275 :LAVEYS 1woqA 224 :ISKRAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=38323 # 1uxoA.272.97 read from T0547.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)G274 (1uxoA)G98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1uxoA)F99 because Y (epsilon') conformation "forbidden" or filtered. T0547 272 :GG 1uxoA 96 :VS T0547 276 :AVEYS 1uxoA 100 :AKSLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38325 # 1jovA.272.69 read from T0547.t2k.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)G272 (1jovA)R70 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1jovA)P78 because C (cis) conformation "forbidden" or filtered. T0547 273 :GGLAVEY 1jovA 71 :GGVPICY Number of specific fragments extracted= 1 number of extra gaps= 2 total=38326 # 1khxA.272.92 read from T0547.t2k.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)E278 (1khxA)Y339 because Y (epsilon') conformation "forbidden" or filtered. T0547 272 :GGGLAV 1khxA 333 :GRGVRL T0547 279 :YS 1khxA 340 :YI Number of specific fragments extracted= 2 number of extra gaps= 1 total=38328 # 1vkpA.272.162 read from T0547.t2k.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)G274 (1vkpA)S165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (1vkpA)G170 because T (delta_L) conformation "forbidden" or filtered. T0547 272 :GG 1vkpA 163 :GG T0547 275 :LAVE 1vkpA 166 :IHVD T0547 280 :S 1vkpA 171 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=38331 # 1eu1A.272.350 read from T0547.t2k.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)G273 (1eu1A)G352 because E (beta_S) conformation "forbidden" or filtered. T0547 272 :G 1eu1A 351 :G T0547 274 :GLAVEYS 1eu1A 353 :GFGLSYH Number of specific fragments extracted= 2 number of extra gaps= 1 total=38333 # 2tpsA.272.142 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)G273 (2tpsA)P152 because C (cis) conformation "forbidden" or filtered. T0547 272 :G 2tpsA 151 :G T0547 274 :GLAVEYS 2tpsA 153 :IYPTETK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38335 # 1wd3A.272.88 read from T0547.t2k.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)G272 (1wd3A)P106 because P (beta_P) conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 1wd3A 107 :GGFDGPDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=38336 # 1mj5A.272.130 read from T0547.t2k.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G272 (1mj5A)M131 because E (beta_S) conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 1mj5A 132 :EAIAMPIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=38337 # 1c4rA.272.12 read from T0547.t2k.many.frag # found chain 1c4rA in template set T0547 272 :GGGLAVEYS 1c4rA 93 :GGQITYKWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38338 # 1h5rA.272.9 read from T0547.t2k.many.frag # found chain 1h5rA in template set Warning: unaligning (T0547)G272 (1h5rA)A10 because G (3-10) conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 1h5rA 11 :GGSGTRLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=38339 # 1iu8A.272.158 read from T0547.t2k.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)G272 (1iu8A)A159 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1iu8A)T167 because P (beta_P) conformation "forbidden" or filtered. T0547 273 :GGLAVEY 1iu8A 160 :GFIHVPY Number of specific fragments extracted= 1 number of extra gaps= 2 total=38340 # 1tr9A.272.64 read from T0547.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)G274 (1tr9A)G66 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1tr9A)V68 because D (zeta) conformation "forbidden" or filtered. T0547 272 :GG 1tr9A 64 :EG T0547 275 :L 1tr9A 67 :R T0547 277 :VEYS 1tr9A 69 :QRFR Number of specific fragments extracted= 3 number of extra gaps= 2 total=38343 # 1ssxA.272.3 read from T0547.t2k.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)G273 (1ssxA)G18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1ssxA)N36 because L (left) conformation "forbidden" or filtered. T0547 272 :G 1ssxA 17 :V T0547 274 :GLAVEY 1ssxA 19 :GIEYSI Number of specific fragments extracted= 2 number of extra gaps= 2 total=38345 # 1txvA.272.50 read from T0547.t2k.many.frag # found chain 1txvA in template set T0547 272 :GGGLAVEYS 1txvA 51 :GGVFLCPWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38346 1hq0A expands to /projects/compbio/data/pdb/1hq0.pdb.gz 1hq0A:Skipped atom 1151, because occupancy 0.500 <= existing 0.500 in 1hq0A # 1hq0A.272.120 read from T0547.t2k.many.frag # adding 1hq0A to template set # found chain 1hq0A in template set Warning: unaligning (T0547)A276 (1hq0A)K844 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1hq0A)A846 because P (beta_P) conformation "forbidden" or filtered. T0547 272 :GGGL 1hq0A 840 :ANGI T0547 277 :V 1hq0A 845 :I T0547 279 :YS 1hq0A 847 :LE Number of specific fragments extracted= 3 number of extra gaps= 2 total=38349 # 1w8kA.272.82 read from T0547.t2k.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)G273 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w8kA)G124 Warning: unaligning (T0547)E278 because of BadResidue code BAD_PEPTIDE in next template residue (1w8kA)N130 Warning: unaligning (T0547)Y279 because of BadResidue code BAD_PEPTIDE at template residue (1w8kA)N130 T0547 274 :GLAV 1w8kA 125 :GFAF T0547 280 :S 1w8kA 131 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=38351 # 1zz1A.272.263 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)E278 (1zz1A)S270 because P (beta_P) conformation "forbidden" or filtered. T0547 272 :GGGLAV 1zz1A 264 :GSGFDA T0547 279 :YS 1zz1A 271 :ML Number of specific fragments extracted= 2 number of extra gaps= 1 total=38353 1nw1A expands to /projects/compbio/data/pdb/1nw1.pdb.gz 1nw1A:# 1nw1A.272.145 read from T0547.t2k.many.frag # adding 1nw1A to template set # found chain 1nw1A in template set Warning: unaligning (T0547)E278 (1nw1A)E152 because P (beta_P) conformation "forbidden" or filtered. T0547 272 :GGGLAV 1nw1A 146 :SGGRLE T0547 279 :YS 1nw1A 153 :YI Number of specific fragments extracted= 2 number of extra gaps= 1 total=38355 # 1knwA.273.225 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 273 :GGLAVEYSQ 1knwA 226 :GGLSVPYQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38356 # 1zwxA.273.193 read from T0547.t2k.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)S280 (1zwxA)G235 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1zwxA)T236 because P (beta_P) conformation "forbidden" or filtered. T0547 273 :GGLAVEY 1zwxA 228 :GDLNVNY Number of specific fragments extracted= 1 number of extra gaps= 1 total=38357 # 1l6rA.273.69 read from T0547.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)G274 (1l6rA)G68 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1l6rA)M70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1l6rA)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 273 :G 1l6rA 67 :G T0547 275 :L 1l6rA 69 :I T0547 277 :VEYS 1l6rA 71 :FDND Number of specific fragments extracted= 3 number of extra gaps= 3 total=38360 # 1jykA.273.32 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)A276 (1jykA)G16 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1jykA)P21 because C (cis) conformation "forbidden" or filtered. T0547 273 :GGL 1jykA 13 :AGL T0547 277 :VEYS 1jykA 17 :TRLR Number of specific fragments extracted= 2 number of extra gaps= 2 total=38362 # 2bjfA.273.2 read from T0547.t2k.many.frag # found chain 2bjfA in training set T0547 273 :GGLAVEYSQ 2bjfA 3 :TGLALETKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38363 # 1rtqA.273.95 read from T0547.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)S280 (1rtqA)G103 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 because of BadResidue code BAD_PEPTIDE in next template residue (1rtqA)H105 T0547 273 :GGLAVEY 1rtqA 96 :GHLDSTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=38364 # 1ezwA.273.62 read from T0547.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)G273 (1ezwA)P63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE in next template residue (1ezwA)I65 Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE at template residue (1ezwA)I65 T0547 276 :AVEYSQ 1ezwA 66 :TNPYTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=38365 # 1iuqA.273.231 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 273 :GGLAVEYSQ 1iuqA 233 :GGRDRPDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38366 # 1vjoA.273.200 read from T0547.t2k.many.frag # found chain 1vjoA in training set T0547 273 :GGLAVEYSQ 1vjoA 189 :GGVPIFLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38367 # 1wd3A.273.89 read from T0547.t2k.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)G273 (1wd3A)G107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1wd3A)G108 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1wd3A)D115 because L (left) conformation "forbidden" or filtered. T0547 275 :LAVEYS 1wd3A 109 :FDGPDT Number of specific fragments extracted= 1 number of extra gaps= 2 total=38368 # 1khxA.273.93 read from T0547.t2k.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)E278 (1khxA)Y339 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :GGLAV 1khxA 334 :RGVRL T0547 279 :YSQ 1khxA 340 :YIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38370 1dqtA expands to /projects/compbio/data/pdb/1dqt.pdb.gz 1dqtA:# 1dqtA.273.16 read from T0547.t2k.many.frag # adding 1dqtA to template set # found chain 1dqtA in template set Warning: unaligning (T0547)A276 (1dqtA)P20 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1dqtA)P25 because C (cis) conformation "forbidden" or filtered. T0547 273 :GGL 1dqtA 17 :ASF T0547 277 :VEYS 1dqtA 21 :CEYS Number of specific fragments extracted= 2 number of extra gaps= 2 total=38372 # 1jovA.273.70 read from T0547.t2k.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)Y279 (1jovA)Y77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1jovA)P78 because C (cis) conformation "forbidden" or filtered. T0547 273 :GGLAVE 1jovA 71 :GGVPIC T0547 281 :Q 1jovA 79 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=38374 # 1h80A.273.117 read from T0547.t2k.many.frag # found chain 1h80A in training set Warning: unaligning (T0547)G274 (1h80A)G146 because S (epsilon) conformation "forbidden" or filtered. T0547 273 :G 1h80A 145 :N T0547 275 :LAVEYSQ 1h80A 147 :FLVDFKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38376 # 1e19A.273.194 read from T0547.t2k.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)Q281 (1e19A)D203 because L (left) conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 1e19A 195 :GGVPVILE Number of specific fragments extracted= 1 number of extra gaps= 1 total=38377 # 1vkpA.273.163 read from T0547.t2k.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)G273 (1vkpA)G164 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1vkpA)S165 because G (3-10) conformation "forbidden" or filtered. T0547 275 :LAVEYSQ 1vkpA 166 :IHVDGEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=38378 # 1mj5A.273.131 read from T0547.t2k.many.frag # found chain 1mj5A in training set T0547 273 :GGLAVEYSQ 1mj5A 132 :EAIAMPIEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=38379 # 1eu1A.273.351 read from T0547.t2k.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)G274 (1eu1A)G353 because S (epsilon) conformation "forbidden" or filtered. T0547 273 :G 1eu1A 352 :G T0547 275 :LAVEYSQ 1eu1A 354 :FGLSYHY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38381 # 2fnuA.273.156 read from T0547.t2k.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE in next template residue (2fnuA)A158 Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE at template residue (2fnuA)A158 Warning: unaligning (T0547)E278 (2fnuA)E162 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (2fnuA)Q164 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (2fnuA)N165 because L (left) conformation "forbidden" or filtered. T0547 275 :LAV 2fnuA 159 :LGS T0547 279 :Y 2fnuA 163 :Y Number of specific fragments extracted= 2 number of extra gaps= 3 total=38383 # 1pjxA.273.174 read from T0547.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0547)G274 (1pjxA)G176 because P (beta_P) conformation "forbidden" or filtered. T0547 273 :G 1pjxA 175 :N T0547 275 :LAVEYSQ 1pjxA 177 :IAVRHMN Number of specific fragments extracted= 2 number of extra gaps= 1 total=38385 # 1dabA.273.146 read from T0547.t2k.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)E278 (1dabA)G152 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1dabA)L154 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :GGLAV 1dabA 147 :GGLHI T0547 279 :Y 1dabA 153 :A T0547 281 :Q 1dabA 155 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=38388 # 1nw1A.273.146 read from T0547.t2k.many.frag # found chain 1nw1A in template set Warning: unaligning (T0547)L275 (1nw1A)R149 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1nw1A)P155 because P (beta_P) conformation "forbidden" or filtered. T0547 273 :GG 1nw1A 147 :GG T0547 276 :AVEYS 1nw1A 150 :LEEYI Number of specific fragments extracted= 2 number of extra gaps= 2 total=38390 # 1y4wA.273.83 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)G273 (1y4wA)S103 because P (beta_P) conformation "forbidden" or filtered. T0547 274 :GLAVEYSQ 1y4wA 104 :GSAVADVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=38391 # 1c4rA.273.13 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)G274 (1c4rA)Q95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1c4rA)P101 because P (beta_P) conformation "forbidden" or filtered. T0547 273 :G 1c4rA 94 :G T0547 275 :LAVEY 1c4rA 96 :ITYKW T0547 281 :Q 1c4rA 102 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=38394 # 1iu8A.273.159 read from T0547.t2k.many.frag # found chain 1iu8A in training set T0547 273 :GGLAVEYSQ 1iu8A 160 :GFIHVPYTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38395 1vkdA expands to /projects/compbio/data/pdb/1vkd.pdb.gz 1vkdA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vkdA.273.69 read from T0547.t2k.many.frag # adding 1vkdA to template set # found chain 1vkdA in template set T0547 273 :GGLAVEYSQ 1vkdA 58 :GVFRIDHKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38396 # 1hq0A.273.121 read from T0547.t2k.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)G273 (1hq0A)N841 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1hq0A)G842 because Y (epsilon') conformation "forbidden" or filtered. T0547 275 :LAVEYSQ 1hq0A 843 :IKIALEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=38397 # 1uxoA.273.98 read from T0547.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)L275 (1uxoA)F99 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :GG 1uxoA 97 :SG T0547 276 :AVEYSQ 1uxoA 100 :AKSLPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=38399 # 1unnC.273.95 read from T0547.t2k.many.frag # found chain 1unnC in template set Warning: unaligning (T0547)G273 (1unnC)V332 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1unnC)T337 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1unnC)D340 because P (beta_P) conformation "forbidden" or filtered. T0547 274 :GLAV 1unnC 333 :GLHV T0547 279 :YS 1unnC 338 :LL Number of specific fragments extracted= 2 number of extra gaps= 3 total=38401 # 1w8kA.273.83 read from T0547.t2k.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)G273 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w8kA)G124 Warning: unaligning (T0547)E278 because of BadResidue code BAD_PEPTIDE in next template residue (1w8kA)N130 Warning: unaligning (T0547)Y279 because of BadResidue code BAD_PEPTIDE at template residue (1w8kA)N130 Warning: unaligning (T0547)Q281 because of BadResidue code BAD_PEPTIDE in next template residue (1w8kA)D133 T0547 274 :GLAV 1w8kA 125 :GFAF T0547 280 :S 1w8kA 131 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=38403 # 1knwA.274.226 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 274 :GLAVEYSQF 1knwA 227 :GLSVPYQQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38404 # 1zwxA.274.194 read from T0547.t2k.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G274 (1zwxA)D229 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. T0547 275 :L 1zwxA 230 :L T0547 277 :VEYSQF 1zwxA 232 :VNYGTD Number of specific fragments extracted= 2 number of extra gaps= 2 total=38406 # 1jykA.274.33 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)A276 (1jykA)G16 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1jykA)P21 because C (cis) conformation "forbidden" or filtered. T0547 274 :GL 1jykA 14 :GL T0547 277 :VEYS 1jykA 17 :TRLR T0547 282 :F 1jykA 22 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=38409 # 1l6rA.274.70 read from T0547.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)A276 (1l6rA)M70 because E (beta_S) conformation "forbidden" or filtered. T0547 274 :GL 1l6rA 68 :GI T0547 277 :VEYSQF 1l6rA 71 :FDNDGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=38411 # 2bjfA.274.3 read from T0547.t2k.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)G274 (2bjfA)G4 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :LAVEYSQF 2bjfA 5 :LALETKDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=38412 # 1h80A.274.118 read from T0547.t2k.many.frag # found chain 1h80A in training set Warning: unaligning (T0547)G274 (1h80A)G146 because S (epsilon) conformation "forbidden" or filtered. T0547 275 :LAVEYSQF 1h80A 147 :FLVDFKDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=38413 # 1iuqA.274.232 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 274 :GLAVEYSQF 1iuqA 234 :GRDRPDPST Number of specific fragments extracted= 1 number of extra gaps= 0 total=38414 # 1khxA.274.94 read from T0547.t2k.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)E278 (1khxA)Y339 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1khxA)G342 because S (epsilon) conformation "forbidden" or filtered. T0547 274 :GLAV 1khxA 335 :GVRL T0547 279 :YS 1khxA 340 :YI T0547 282 :F 1khxA 343 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=38417 # 1dqtA.274.17 read from T0547.t2k.many.frag # found chain 1dqtA in template set Warning: unaligning (T0547)L275 (1dqtA)F19 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1dqtA)P25 because C (cis) conformation "forbidden" or filtered. T0547 274 :G 1dqtA 18 :S T0547 276 :AVEYS 1dqtA 20 :PCEYS T0547 282 :F 1dqtA 26 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=38420 # 1vjoA.274.201 read from T0547.t2k.many.frag # found chain 1vjoA in training set T0547 274 :GLAVEYSQF 1vjoA 190 :GVPIFLDAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=38421 # 1pjxA.274.175 read from T0547.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0547)G274 (1pjxA)G176 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1pjxA)A178 because Y (epsilon') conformation "forbidden" or filtered. T0547 275 :L 1pjxA 177 :I T0547 277 :VEYSQF 1pjxA 179 :VRHMND Number of specific fragments extracted= 2 number of extra gaps= 2 total=38423 # 1ezwA.274.63 read from T0547.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE in next template residue (1ezwA)I65 Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE at template residue (1ezwA)I65 T0547 276 :AVEYSQF 1ezwA 66 :TNPYTRH Number of specific fragments extracted= 1 number of extra gaps= 1 total=38424 # 1c4rA.274.14 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)G274 (1c4rA)Q95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1c4rA)K99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1c4rA)N103 because G (3-10) conformation "forbidden" or filtered. T0547 275 :LAV 1c4rA 96 :ITY T0547 279 :YSQ 1c4rA 100 :WPP Number of specific fragments extracted= 2 number of extra gaps= 3 total=38426 # 1dabA.274.147 read from T0547.t2k.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)Y279 (1dabA)A153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1dabA)L154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1dabA)S156 because L (left) conformation "forbidden" or filtered. T0547 274 :GLAVE 1dabA 148 :GLHIG T0547 281 :Q 1dabA 155 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=38428 # 1rtqA.274.96 read from T0547.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)E278 (1rtqA)T101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (1rtqA)I102 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 because of BadResidue code BAD_PEPTIDE in next template residue (1rtqA)H105 Warning: unaligning (T0547)F282 because of BadResidue code BAD_PEPTIDE at template residue (1rtqA)H105 T0547 274 :GLAV 1rtqA 97 :HLDS T0547 280 :S 1rtqA 103 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=38430 # 1unnC.274.96 read from T0547.t2k.many.frag # found chain 1unnC in template set T0547 274 :GLAVEYSQF 1unnC 333 :GLHVTLLDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38431 # 2fnuA.274.157 read from T0547.t2k.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE at template residue (2fnuA)A158 Warning: unaligning (T0547)S280 (2fnuA)Q164 because L (left) conformation "forbidden" or filtered. T0547 275 :LAVEY 2fnuA 159 :LGSEY T0547 281 :QF 2fnuA 165 :NK Number of specific fragments extracted= 2 number of extra gaps= 2 total=38433 # 1iu8A.274.160 read from T0547.t2k.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)E278 (1iu8A)P165 because P (beta_P) conformation "forbidden" or filtered. T0547 274 :GLAV 1iu8A 161 :FIHV T0547 279 :YSQF 1iu8A 166 :YTPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38435 # 1kptA.274.95 read from T0547.t2k.many.frag # found chain 1kptA in training set Warning: unaligning (T0547)G274 (1kptA)Q96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1kptA)N100 because Y (epsilon') conformation "forbidden" or filtered. T0547 275 :LAV 1kptA 97 :LTV T0547 279 :YSQF 1kptA 101 :YVNS Number of specific fragments extracted= 2 number of extra gaps= 2 total=38437 # 1v2xA.274.138 read from T0547.t2k.many.frag # found chain 1v2xA in training set Warning: unaligning (T0547)G274 (1v2xA)A139 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1v2xA)G146 because Y (epsilon') conformation "forbidden" or filtered. T0547 275 :LAVEYS 1v2xA 140 :IKIPML T0547 282 :F 1v2xA 147 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=38439 # 1wd3A.274.90 read from T0547.t2k.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)A276 (1wd3A)D110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1wd3A)D115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1wd3A)G116 because T (delta_L) conformation "forbidden" or filtered. T0547 274 :GL 1wd3A 108 :GF T0547 277 :VEYS 1wd3A 111 :GPDT Number of specific fragments extracted= 2 number of extra gaps= 2 total=38441 # 1vkpA.274.164 read from T0547.t2k.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)G274 (1vkpA)S165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (1vkpA)G170 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1vkpA)G172 because T (delta_L) conformation "forbidden" or filtered. T0547 275 :LAVE 1vkpA 166 :IHVD T0547 280 :S 1vkpA 171 :E T0547 282 :F 1vkpA 173 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=38444 # 1jovA.274.71 read from T0547.t2k.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)Y279 (1jovA)Y77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1jovA)P78 because C (cis) conformation "forbidden" or filtered. T0547 274 :GLAVE 1jovA 72 :GVPIC T0547 281 :QF 1jovA 79 :WF Number of specific fragments extracted= 2 number of extra gaps= 1 total=38446 # 1n8yC.274.36 read from T0547.t2k.many.frag # found chain 1n8yC in template set Warning: unaligning (T0547)Q281 (1n8yC)P44 because P (beta_P) conformation "forbidden" or filtered. T0547 274 :GLAVEYS 1n8yC 37 :NLELTYV T0547 282 :F 1n8yC 45 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=38448 # 2tpsA.274.144 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)F282 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)T162 T0547 274 :GLAVEYSQ 2tpsA 153 :IYPTETKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=38449 # 1jg1A.274.183 read from T0547.t2k.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)S280 (1jg1A)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 274 :GLAVEY 1jg1A 184 :KLIIPV T0547 281 :QF 1jg1A 191 :SY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38451 # 1e19A.274.195 read from T0547.t2k.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)E278 (1e19A)I200 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1e19A)G204 because T (delta_L) conformation "forbidden" or filtered. T0547 274 :GLAV 1e19A 196 :GVPV T0547 279 :YSQ 1e19A 201 :LED Number of specific fragments extracted= 2 number of extra gaps= 2 total=38453 1yroB expands to /projects/compbio/data/pdb/1yro.pdb.gz 1yroB:# 1yroB.274.189 read from T0547.t2k.many.frag # adding 1yroB to template set # found chain 1yroB in template set Warning: unaligning (T0547)G274 (1yroB)G306 because S (epsilon) conformation "forbidden" or filtered. T0547 275 :LAVEYSQF 1yroB 307 :FPNNYWGW Number of specific fragments extracted= 1 number of extra gaps= 1 total=38454 # 1mj5A.274.132 read from T0547.t2k.many.frag # found chain 1mj5A in training set T0547 274 :GLAVEYSQF 1mj5A 133 :AIAMPIEWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38455 1zboA expands to /projects/compbio/data/pdb/1zbo.pdb.gz 1zboA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zboA.274.65 read from T0547.t2k.many.frag # adding 1zboA to template set # found chain 1zboA in template set T0547 274 :GLAVEYSQF 1zboA 66 :GTMARIDHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=38456 # 1knwA.275.227 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)F282 (1knwA)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 275 :LAVEYSQ 1knwA 228 :LSVPYQQ T0547 283 :K 1knwA 236 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=38458 # 1h80A.275.119 read from T0547.t2k.many.frag # found chain 1h80A in training set Warning: unaligning (T0547)K283 (1h80A)R155 because G (3-10) conformation "forbidden" or filtered. T0547 275 :LAVEYSQF 1h80A 147 :FLVDFKDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=38459 # 1zwxA.275.195 read from T0547.t2k.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)S280 (1zwxA)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 275 :LAVEY 1zwxA 230 :LNVNY T0547 281 :QFK 1zwxA 236 :TDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38461 # 1dqtA.275.18 read from T0547.t2k.many.frag # found chain 1dqtA in template set Warning: unaligning (T0547)A276 (1dqtA)P20 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1dqtA)P25 because C (cis) conformation "forbidden" or filtered. T0547 275 :L 1dqtA 19 :F T0547 277 :VEYS 1dqtA 21 :CEYS T0547 282 :FK 1dqtA 26 :SH Number of specific fragments extracted= 3 number of extra gaps= 2 total=38464 # 1dabA.275.148 read from T0547.t2k.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)A276 (1dabA)H150 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1dabA)L154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1dabA)Q155 because S (epsilon) conformation "forbidden" or filtered. T0547 275 :L 1dabA 149 :L T0547 277 :VEY 1dabA 151 :IGA T0547 282 :FK 1dabA 156 :SL Number of specific fragments extracted= 3 number of extra gaps= 2 total=38467 # 1c4rA.275.15 read from T0547.t2k.many.frag # found chain 1c4rA in template set T0547 275 :LAVEYSQFK 1c4rA 96 :ITYKWPPND Number of specific fragments extracted= 1 number of extra gaps= 0 total=38468 # 1ydgA.275.168 read from T0547.t2k.many.frag # found chain 1ydgA in template set Warning: unaligning (T0547)S280 (1ydgA)N172 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1ydgA)G173 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1ydgA)P175 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :LAVEY 1ydgA 167 :ASVTA T0547 282 :F 1ydgA 174 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=38470 # 1khxA.275.95 read from T0547.t2k.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)E278 (1khxA)Y339 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1khxA)G342 because S (epsilon) conformation "forbidden" or filtered. T0547 275 :LAV 1khxA 336 :VRL T0547 279 :YS 1khxA 340 :YI T0547 282 :FK 1khxA 343 :GE Number of specific fragments extracted= 3 number of extra gaps= 2 total=38473 # 1jg1A.275.184 read from T0547.t2k.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)A276 (1jg1A)I186 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1jg1A)P188 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :L 1jg1A 185 :L T0547 277 :V 1jg1A 187 :I T0547 279 :YSQFK 1jg1A 189 :VGSYH Number of specific fragments extracted= 3 number of extra gaps= 2 total=38476 # 1kptA.275.96 read from T0547.t2k.many.frag # found chain 1kptA in training set Warning: unaligning (T0547)E278 (1kptA)N100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 because last residue in template chain is (1kptA)C105 T0547 275 :LAV 1kptA 97 :LTV T0547 279 :YSQF 1kptA 101 :YVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=38478 # 1jykA.275.34 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)A276 (1jykA)G16 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1jykA)P21 because C (cis) conformation "forbidden" or filtered. T0547 275 :L 1jykA 15 :L T0547 277 :VEYS 1jykA 17 :TRLR T0547 282 :FK 1jykA 22 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=38481 1qwtA expands to /projects/compbio/data/pdb/1qwt.pdb.gz 1qwtA:# 1qwtA.275.68 read from T0547.t2k.many.frag # adding 1qwtA to template set # found chain 1qwtA in template set Warning: unaligning (T0547)E278 (1qwtA)T244 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :LAV 1qwtA 241 :WPV T0547 279 :YSQFK 1qwtA 245 :LPDPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38483 # 1zboA.275.66 read from T0547.t2k.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)A276 (1zboA)M68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1zboA)H73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1zboA)E75 because Y (epsilon') conformation "forbidden" or filtered. T0547 275 :L 1zboA 67 :T T0547 277 :VEYS 1zboA 69 :ARID T0547 282 :F 1zboA 74 :W Number of specific fragments extracted= 3 number of extra gaps= 3 total=38486 # 1v2xA.275.139 read from T0547.t2k.many.frag # found chain 1v2xA in training set T0547 275 :LAVEYSQFK 1v2xA 140 :IKIPMLGMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38487 1izmA expands to /projects/compbio/data/pdb/1izm.pdb.gz 1izmA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1izmA.275.136 read from T0547.t2k.many.frag # adding 1izmA to template set # found chain 1izmA in template set Warning: unaligning (T0547)S280 (1izmA)D140 because Y (epsilon') conformation "forbidden" or filtered. T0547 275 :LAVEY 1izmA 135 :CQLGY T0547 281 :QFK 1izmA 141 :EDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38489 # 1iuqA.275.233 read from T0547.t2k.many.frag # found chain 1iuqA in training set T0547 275 :LAVEYSQFK 1iuqA 235 :RDRPDPSTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38490 # 1n8yC.275.37 read from T0547.t2k.many.frag # found chain 1n8yC in template set Warning: unaligning (T0547)K283 (1n8yC)N46 because G (3-10) conformation "forbidden" or filtered. T0547 275 :LAVEYSQF 1n8yC 38 :LELTYVPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=38491 # 1pjxA.275.176 read from T0547.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0547)E278 (1pjxA)R180 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :LAV 1pjxA 177 :IAV T0547 279 :YSQFK 1pjxA 181 :HMNDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38493 # 1vjoA.275.202 read from T0547.t2k.many.frag # found chain 1vjoA in training set Warning: unaligning (T0547)K283 (1vjoA)G199 because L (left) conformation "forbidden" or filtered. T0547 275 :LAVEYSQF 1vjoA 191 :VPIFLDAW Number of specific fragments extracted= 1 number of extra gaps= 1 total=38494 # 1h0hB.275.3 read from T0547.t2k.many.frag # found chain 1h0hB in training set T0547 275 :LAVEYSQFK 1h0hB 4 :FFVDTTRCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38495 1r8eA expands to /projects/compbio/data/pdb/1r8e.pdb.gz 1r8eA:# 1r8eA.275.134 read from T0547.t2k.many.frag # adding 1r8eA to template set # found chain 1r8eA in template set Warning: unaligning (T0547)E278 (1r8eA)E138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1r8eA)E140 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1r8eA)G141 because T (delta_L) conformation "forbidden" or filtered. T0547 275 :LAV 1r8eA 135 :IQT T0547 279 :Y 1r8eA 139 :A T0547 282 :FK 1r8eA 142 :IG Number of specific fragments extracted= 3 number of extra gaps= 2 total=38498 # 1unnC.275.97 read from T0547.t2k.many.frag # found chain 1unnC in template set Warning: unaligning (T0547)A276 (1unnC)H335 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1unnC)Q342 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :L 1unnC 334 :L T0547 277 :VEYSQF 1unnC 336 :VTLLDP Number of specific fragments extracted= 2 number of extra gaps= 2 total=38500 # 1fvkA.275.158 read from T0547.t2k.many.frag # found chain 1fvkA in training set T0547 275 :LAVEYSQFK 1fvkA 159 :YQLNPQGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38501 # 2tpsA.275.145 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)F282 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)T162 Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE at template residue (2tpsA)T162 T0547 275 :LAVEYSQ 2tpsA 154 :YPTETKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=38502 # 1mj5A.275.133 read from T0547.t2k.many.frag # found chain 1mj5A in training set T0547 275 :LAVEYSQFK 1mj5A 134 :IAMPIEWAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38503 # 1h6fA.275.37 read from T0547.t2k.many.frag # found chain 1h6fA in training set T0547 275 :LAVEYSQFK 1h6fA 136 :FKVRCSGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38504 # 1jo0A.275.46 read from T0547.t2k.many.frag # found chain 1jo0A in training set Warning: unaligning (T0547)Q281 (1jo0A)G54 because L (left) conformation "forbidden" or filtered. T0547 275 :LAVEYS 1jo0A 48 :IKVKVA T0547 282 :FK 1jo0A 55 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38506 # 1qu9A.275.32 read from T0547.t2k.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)F282 (1qu9A)G40 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1qu9A)E41 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :LAVEYSQ 1qu9A 33 :IPVNPKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=38507 # 1ssxA.275.6 read from T0547.t2k.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)S280 (1ssxA)N36 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1ssxA)N38 because L (left) conformation "forbidden" or filtered. T0547 275 :LAVEY 1ssxA 31 :IEYSI T0547 282 :FK 1ssxA 39 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=38509 1vqoX expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoX:# 1vqoX.275.10 read from T0547.t2k.many.frag # adding 1vqoX to template set # found chain 1vqoX in template set T0547 275 :LAVEYSQFK 1vqoX 10 :VTIPLRDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38510 # 1knwA.276.228 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 276 :AVEYSQFKN 1knwA 229 :SVPYQQGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38511 # 1ydgA.276.169 read from T0547.t2k.many.frag # found chain 1ydgA in template set Warning: unaligning (T0547)Q281 (1ydgA)G173 because T (delta_L) conformation "forbidden" or filtered. T0547 276 :AVEYS 1ydgA 168 :SVTAN T0547 282 :FKN 1ydgA 174 :QPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=38513 # 1dqtA.276.19 read from T0547.t2k.many.frag # found chain 1dqtA in template set Warning: unaligning (T0547)Q281 (1dqtA)P25 because C (cis) conformation "forbidden" or filtered. T0547 276 :AVEYS 1dqtA 20 :PCEYS T0547 282 :FKN 1dqtA 26 :SHN Number of specific fragments extracted= 2 number of extra gaps= 1 total=38515 # 1h80A.276.120 read from T0547.t2k.many.frag # found chain 1h80A in training set T0547 276 :AVEYSQFKN 1h80A 148 :LVDFKDSRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38516 # 1dabA.276.149 read from T0547.t2k.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)S280 (1dabA)L154 because Y (epsilon') conformation "forbidden" or filtered. T0547 276 :AVEY 1dabA 150 :HIGA T0547 281 :QFKN 1dabA 155 :QSLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=38518 # 1izmA.276.137 read from T0547.t2k.many.frag # found chain 1izmA in template set Warning: unaligning (T0547)Y279 (1izmA)Y139 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1izmA)D140 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1izmA)E141 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1izmA)D142 because G (3-10) conformation "forbidden" or filtered. T0547 276 :AVE 1izmA 136 :QLG T0547 283 :KN 1izmA 143 :DN Number of specific fragments extracted= 2 number of extra gaps= 1 total=38520 # 1zboA.276.67 read from T0547.t2k.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)K283 (1zboA)E75 because Y (epsilon') conformation "forbidden" or filtered. T0547 276 :AVEYSQF 1zboA 68 :MARIDHW T0547 284 :N 1zboA 76 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=38522 # 1h6fA.276.38 read from T0547.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)A276 (1h6fA)K137 because E (beta_S) conformation "forbidden" or filtered. T0547 277 :VEYSQFKN 1h6fA 138 :VRCSGLDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=38523 # 1c4rA.276.16 read from T0547.t2k.many.frag # found chain 1c4rA in template set T0547 276 :AVEYSQFKN 1c4rA 97 :TYKWPPNDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38524 # 1qwtA.276.69 read from T0547.t2k.many.frag # found chain 1qwtA in template set T0547 276 :AVEYSQFKN 1qwtA 242 :PVTLPDPGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=38525 # 1fvkA.276.159 read from T0547.t2k.many.frag # found chain 1fvkA in training set Warning: unaligning (T0547)K283 (1fvkA)D167 because P (beta_P) conformation "forbidden" or filtered. T0547 276 :AVEYSQF 1fvkA 160 :QLNPQGM T0547 284 :N 1fvkA 168 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=38527 # 1vqoX.276.11 read from T0547.t2k.many.frag # found chain 1vqoX in template set Warning: unaligning (T0547)Y279 (1vqoX)L14 because G (3-10) conformation "forbidden" or filtered. T0547 276 :AVE 1vqoX 11 :TIP T0547 280 :SQFKN 1vqoX 15 :RDARA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38529 # 1khxA.276.96 read from T0547.t2k.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)E278 (1khxA)Y339 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1khxA)G342 because S (epsilon) conformation "forbidden" or filtered. T0547 276 :AV 1khxA 337 :RL T0547 279 :YS 1khxA 340 :YI T0547 282 :FKN 1khxA 343 :GEV Number of specific fragments extracted= 3 number of extra gaps= 2 total=38532 # 2d1eA.276.4 read from T0547.t2k.many.frag # found chain 2d1eA in training set Warning: unaligning (T0547)V277 because first residue in template chain is (2d1eA)L6 Warning: unaligning (T0547)E278 because of BadResidue code BAD_PEPTIDE at template residue (2d1eA)S7 T0547 279 :YSQFKN 2d1eA 8 :LTNSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38533 # 1n8yC.276.38 read from T0547.t2k.many.frag # found chain 1n8yC in template set Warning: unaligning (T0547)K283 (1n8yC)N46 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1n8yC)A47 because P (beta_P) conformation "forbidden" or filtered. T0547 276 :AVEYSQF 1n8yC 39 :ELTYVPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=38534 # 1jo0A.276.47 read from T0547.t2k.many.frag # found chain 1jo0A in training set Warning: unaligning (T0547)Q281 (1jo0A)G54 because L (left) conformation "forbidden" or filtered. T0547 276 :AVEYS 1jo0A 49 :KVKVA T0547 282 :FKN 1jo0A 55 :ADR Number of specific fragments extracted= 2 number of extra gaps= 1 total=38536 # 1jykA.276.35 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)A276 (1jykA)G16 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1jykA)P21 because C (cis) conformation "forbidden" or filtered. T0547 277 :VEYS 1jykA 17 :TRLR T0547 282 :FKN 1jykA 22 :LTE Number of specific fragments extracted= 2 number of extra gaps= 2 total=38538 # 1qu9A.276.33 read from T0547.t2k.many.frag # found chain 1qu9A in training set T0547 276 :AVEYSQFKN 1qu9A 34 :PVNPKTGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38539 # 1zwxA.276.196 read from T0547.t2k.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1zwxA)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 277 :VEY 1zwxA 232 :VNY T0547 281 :QFKN 1zwxA 236 :TDEY Number of specific fragments extracted= 2 number of extra gaps= 2 total=38541 1ztpA expands to /projects/compbio/data/pdb/1ztp.pdb.gz 1ztpA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ztpA.276.79 read from T0547.t2k.many.frag # adding 1ztpA to template set # found chain 1ztpA in template set Warning: unaligning (T0547)Q281 (1ztpA)G85 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1ztpA)N89 T0547 276 :AVEYS 1ztpA 80 :AVYGQ T0547 282 :FK 1ztpA 86 :YS Number of specific fragments extracted= 2 number of extra gaps= 2 total=38543 # 1jg1A.276.185 read from T0547.t2k.many.frag # found chain 1jg1A in training set T0547 276 :AVEYSQFKN 1jg1A 186 :IIPVGSYHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38544 # 2tpsA.276.146 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)F282 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)T162 Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE at template residue (2tpsA)T162 T0547 276 :AVEYSQ 2tpsA 155 :PTETKK T0547 284 :N 2tpsA 163 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=38546 # 1v2xA.276.140 read from T0547.t2k.many.frag # found chain 1v2xA in training set Warning: unaligning (T0547)A276 (1v2xA)K141 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1v2xA)L145 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1v2xA)G146 because Y (epsilon') conformation "forbidden" or filtered. T0547 277 :VEY 1v2xA 142 :IPM T0547 282 :FKN 1v2xA 147 :MVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=38548 # 1mj5A.276.134 read from T0547.t2k.many.frag # found chain 1mj5A in training set T0547 276 :AVEYSQFKN 1mj5A 135 :AMPIEWADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38549 # 1e19A.276.197 read from T0547.t2k.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)Q281 (1e19A)D203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1e19A)G204 because T (delta_L) conformation "forbidden" or filtered. T0547 276 :AVEYS 1e19A 198 :PVILE T0547 283 :KN 1e19A 205 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=38551 # 1h0hB.276.4 read from T0547.t2k.many.frag # found chain 1h0hB in training set T0547 276 :AVEYSQFKN 1h0hB 5 :FVDTTRCTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38552 # 1iuqA.276.234 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)E278 (1iuqA)P238 because P (beta_P) conformation "forbidden" or filtered. T0547 276 :AV 1iuqA 236 :DR T0547 279 :YSQFKN 1iuqA 239 :DPSTGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38554 # 1cfzA.276.117 read from T0547.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0547)K283 (1cfzA)E125 because P (beta_P) conformation "forbidden" or filtered. T0547 276 :AVEYSQF 1cfzA 118 :GVIPESL T0547 284 :N 1cfzA 126 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=38556 # 1ve4A.276.97 read from T0547.t2k.many.frag # found chain 1ve4A in training set Warning: unaligning (T0547)E278 (1ve4A)R100 because Y (epsilon') conformation "forbidden" or filtered. T0547 276 :AV 1ve4A 98 :LI T0547 279 :YSQFKN 1ve4A 101 :RPGDTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38558 # 1dk0A.276.3 read from T0547.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)A276 (1dk0A)S4 because E (beta_S) conformation "forbidden" or filtered. T0547 277 :VEYSQFKN 1dk0A 5 :VNYDSSFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=38559 # 1knwA.277.229 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q281 (1knwA)Q234 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1knwA)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 277 :VEYS 1knwA 230 :VPYQ T0547 283 :KNE 1knwA 236 :EEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38561 # 1ydgA.277.170 read from T0547.t2k.many.frag # found chain 1ydgA in template set Warning: unaligning (T0547)Q281 (1ydgA)G173 because T (delta_L) conformation "forbidden" or filtered. T0547 277 :VEYS 1ydgA 169 :VTAN T0547 282 :FKNE 1ydgA 174 :QPLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=38563 # 1dqtA.277.20 read from T0547.t2k.many.frag # found chain 1dqtA in template set Warning: unaligning (T0547)Q281 (1dqtA)P25 because C (cis) conformation "forbidden" or filtered. T0547 277 :VEYS 1dqtA 21 :CEYS T0547 282 :FKNE 1dqtA 26 :SHNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=38565 # 1zboA.277.68 read from T0547.t2k.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)Q281 (1zboA)H73 because Y (epsilon') conformation "forbidden" or filtered. T0547 277 :VEYS 1zboA 69 :ARID T0547 282 :FKNE 1zboA 74 :WEAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38567 # 1izmA.277.138 read from T0547.t2k.many.frag # found chain 1izmA in template set Warning: unaligning (T0547)Q281 (1izmA)E141 because S (epsilon) conformation "forbidden" or filtered. T0547 277 :VEYS 1izmA 137 :LGYD T0547 282 :FKNE 1izmA 142 :DDNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38569 # 1h6fA.277.39 read from T0547.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)Q281 (1h6fA)G142 because L (left) conformation "forbidden" or filtered. T0547 277 :VEYS 1h6fA 138 :VRCS T0547 282 :FKNE 1h6fA 143 :LDKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38571 # 1dabA.277.150 read from T0547.t2k.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)S280 (1dabA)L154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1dabA)Q155 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1dabA)S156 because L (left) conformation "forbidden" or filtered. T0547 277 :VEY 1dabA 151 :IGA T0547 283 :KNE 1dabA 157 :LQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38573 # 1r2mA.277.23 read from T0547.t2k.many.frag # found chain 1r2mA in template set Warning: unaligning (T0547)E278 (1r2mA)D25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1r2mA)A32 because P (beta_P) conformation "forbidden" or filtered. T0547 277 :V 1r2mA 24 :V T0547 279 :YSQFKN 1r2mA 26 :CKTPTI Number of specific fragments extracted= 2 number of extra gaps= 2 total=38575 # 1h80A.277.121 read from T0547.t2k.many.frag # found chain 1h80A in training set Warning: unaligning (T0547)E278 (1h80A)D150 because E (beta_S) conformation "forbidden" or filtered. T0547 277 :V 1h80A 149 :V T0547 279 :YSQFKNE 1h80A 151 :FKDSRDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38577 # 1cvrA.277.147 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)K283 (1cvrA)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 277 :VEYSQF 1cvrA 148 :IASAEG T0547 284 :NE 1cvrA 155 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=38579 # 1fvkA.277.160 read from T0547.t2k.many.frag # found chain 1fvkA in training set T0547 277 :VEYSQFKNE 1fvkA 161 :LNPQGMDTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38580 # 2d1eA.277.5 read from T0547.t2k.many.frag # found chain 2d1eA in training set Warning: unaligning (T0547)V277 because first residue in template chain is (2d1eA)L6 Warning: unaligning (T0547)E278 because of BadResidue code BAD_PEPTIDE at template residue (2d1eA)S7 T0547 279 :YSQFKNE 2d1eA 8 :LTNSSLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=38581 # 1c4rA.277.17 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)E285 (1c4rA)P106 because P (beta_P) conformation "forbidden" or filtered. T0547 277 :VEYSQFKN 1c4rA 98 :YKWPPNDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=38582 # 1onrA.277.261 read from T0547.t2k.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)E278 (1onrA)S264 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1onrA)K270 because E (beta_S) conformation "forbidden" or filtered. T0547 277 :V 1onrA 263 :L T0547 279 :YSQFK 1onrA 265 :YTGEV T0547 285 :E 1onrA 271 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=38585 # 2tpsA.277.147 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)F282 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)T162 Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE at template residue (2tpsA)T162 T0547 277 :VEYSQ 2tpsA 156 :TETKK T0547 284 :NE 2tpsA 163 :RA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38587 # 1qwtA.277.70 read from T0547.t2k.many.frag # found chain 1qwtA in template set Warning: unaligning (T0547)E278 (1qwtA)T244 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1qwtA)M250 because G (3-10) conformation "forbidden" or filtered. T0547 277 :V 1qwtA 243 :V T0547 279 :YSQFK 1qwtA 245 :LPDPG T0547 285 :E 1qwtA 251 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=38590 # 1n8yC.277.39 read from T0547.t2k.many.frag # found chain 1n8yC in template set Warning: unaligning (T0547)Y279 (1n8yC)Y42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1n8yC)P44 because P (beta_P) conformation "forbidden" or filtered. T0547 277 :VE 1n8yC 40 :LT T0547 280 :S 1n8yC 43 :V T0547 282 :FKNE 1n8yC 45 :ANAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=38593 # 1vqoX.277.12 read from T0547.t2k.many.frag # found chain 1vqoX in template set Warning: unaligning (T0547)Y279 (1vqoX)L14 because G (3-10) conformation "forbidden" or filtered. T0547 277 :VE 1vqoX 12 :IP T0547 280 :SQFKNE 1vqoX 15 :RDARAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38595 # 1dk0A.277.4 read from T0547.t2k.many.frag # found chain 1dk0A in training set T0547 277 :VEYSQFKNE 1dk0A 5 :VNYDSSFGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38596 # 1qu9A.277.34 read from T0547.t2k.many.frag # found chain 1qu9A in training set T0547 277 :VEYSQFKNE 1qu9A 35 :VNPKTGEVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38597 2bmaA expands to /projects/compbio/data/pdb/2bma.pdb.gz 2bmaA:# 2bmaA.277.216 read from T0547.t2k.many.frag # adding 2bmaA to template set # found chain 2bmaA in template set Warning: unaligning (T0547)E278 (2bmaA)N196 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (2bmaA)G200 because T (delta_L) conformation "forbidden" or filtered. T0547 277 :V 2bmaA 194 :K T0547 279 :YSQ 2bmaA 197 :VKW T0547 283 :KNE 2bmaA 201 :GSN Number of specific fragments extracted= 3 number of extra gaps= 2 total=38600 # 1vjjA.277.237 read from T0547.t2k.many.frag # found chain 1vjjA in template set T0547 277 :VEYSQFKNE 1vjjA 238 :GTYTGGRDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38601 1iu4A expands to /projects/compbio/data/pdb/1iu4.pdb.gz 1iu4A:# 1iu4A.277.158 read from T0547.t2k.many.frag # adding 1iu4A to template set # found chain 1iu4A in template set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)A166 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)A166 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1iu4A)R167 T0547 277 :VEYSQF 1iu4A 159 :DALRNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=38602 # 1jykA.277.36 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)Q281 (1jykA)P21 because C (cis) conformation "forbidden" or filtered. T0547 277 :VEYS 1jykA 17 :TRLR T0547 282 :FKNE 1jykA 22 :LTEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=38604 # 1c93A.277.128 read from T0547.t2k.many.frag # found chain 1c93A in template set Warning: unaligning (T0547)E278 (1c93A)E135 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1c93A)N139 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1c93A)T141 because P (beta_P) conformation "forbidden" or filtered. T0547 277 :V 1c93A 134 :A T0547 279 :YSQ 1c93A 136 :YGN T0547 283 :K 1c93A 140 :G T0547 285 :E 1c93A 142 :A Number of specific fragments extracted= 4 number of extra gaps= 3 total=38608 1fviA expands to /projects/compbio/data/pdb/1fvi.pdb.gz 1fviA:# 1fviA.277.96 read from T0547.t2k.many.frag # adding 1fviA to template set # found chain 1fviA in template set Warning: unaligning (T0547)E278 (1fviA)D99 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (1fviA)Y100 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1fviA)T102 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1fviA)D104 because N (gamma') conformation "forbidden" or filtered. T0547 277 :V 1fviA 98 :F T0547 280 :S 1fviA 101 :V T0547 282 :F 1fviA 103 :D T0547 284 :NE 1fviA 105 :PL Number of specific fragments extracted= 4 number of extra gaps= 3 total=38612 # 1khxA.277.97 read from T0547.t2k.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)E278 (1khxA)Y339 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1khxA)F346 because E (beta_S) conformation "forbidden" or filtered. T0547 277 :V 1khxA 338 :L T0547 279 :YSQFKN 1khxA 340 :YIGGEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=38614 # 1dfuP.277.27 read from T0547.t2k.many.frag # found chain 1dfuP in training set Warning: unaligning (T0547)F282 (1dfuP)G33 because S (epsilon) conformation "forbidden" or filtered. T0547 277 :VEYSQ 1dfuP 28 :AIIYG T0547 283 :KNE 1dfuP 34 :KEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38616 # 1jo0A.277.48 read from T0547.t2k.many.frag # found chain 1jo0A in training set Warning: unaligning (T0547)E278 (1jo0A)K51 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1jo0A)G54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1jo0A)D56 because P (beta_P) conformation "forbidden" or filtered. T0547 277 :V 1jo0A 50 :V T0547 279 :YS 1jo0A 52 :VA T0547 282 :F 1jo0A 55 :A T0547 284 :NE 1jo0A 57 :RE Number of specific fragments extracted= 4 number of extra gaps= 3 total=38620 1ayoA expands to /projects/compbio/data/pdb/1ayo.pdb.gz 1ayoA:# 1ayoA.277.29 read from T0547.t2k.many.frag # adding 1ayoA to template set # found chain 1ayoA in template set Warning: unaligning (T0547)Q281 (1ayoA)G36 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1ayoA)A40 because Y (epsilon') conformation "forbidden" or filtered. T0547 277 :VEYS 1ayoA 32 :VSYI T0547 282 :FKN 1ayoA 37 :SRP Number of specific fragments extracted= 2 number of extra gaps= 2 total=38622 # 1knwA.278.230 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)F282 (1knwA)G235 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1knwA)E236 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYSQ 1knwA 231 :PYQQ T0547 284 :NEK 1knwA 237 :EAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=38624 # 1ydgA.278.171 read from T0547.t2k.many.frag # found chain 1ydgA in template set Warning: unaligning (T0547)E278 (1ydgA)T170 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1ydgA)N172 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1ydgA)G173 because T (delta_L) conformation "forbidden" or filtered. T0547 279 :Y 1ydgA 171 :A T0547 282 :FKNEK 1ydgA 174 :QPLLE Number of specific fragments extracted= 2 number of extra gaps= 2 total=38626 # 1izmA.278.139 read from T0547.t2k.many.frag # found chain 1izmA in template set Warning: unaligning (T0547)S280 (1izmA)D140 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1izmA)D142 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1izmA)N144 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1izmA)E145 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EY 1izmA 138 :GY T0547 281 :Q 1izmA 141 :E T0547 283 :K 1izmA 143 :D T0547 286 :K 1izmA 146 :E Number of specific fragments extracted= 4 number of extra gaps= 3 total=38630 # 1zboA.278.69 read from T0547.t2k.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)Q281 (1zboA)H73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1zboA)E75 because Y (epsilon') conformation "forbidden" or filtered. T0547 278 :EYS 1zboA 70 :RID T0547 282 :F 1zboA 74 :W T0547 284 :NEK 1zboA 76 :APM Number of specific fragments extracted= 3 number of extra gaps= 2 total=38633 # 1dqtA.278.21 read from T0547.t2k.many.frag # found chain 1dqtA in template set Warning: unaligning (T0547)Q281 (1dqtA)P25 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1dqtA)D30 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYS 1dqtA 22 :EYS T0547 282 :FKNE 1dqtA 26 :SHNT Number of specific fragments extracted= 2 number of extra gaps= 2 total=38635 # 2tpsA.278.148 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)F282 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)T162 Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE at template residue (2tpsA)T162 T0547 278 :EYSQ 2tpsA 157 :ETKK T0547 284 :NEK 2tpsA 163 :RAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=38637 # 1onrA.278.262 read from T0547.t2k.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)E278 (1onrA)S264 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1onrA)V269 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQF 1onrA 265 :YTGE T0547 284 :NEK 1onrA 270 :KAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=38639 # 1r2mA.278.24 read from T0547.t2k.many.frag # found chain 1r2mA in template set Warning: unaligning (T0547)E278 (1r2mA)D25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1r2mA)T30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1r2mA)I31 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1r2mA)V33 because E (beta_S) conformation "forbidden" or filtered. T0547 279 :YSQF 1r2mA 26 :CKTP T0547 285 :E 1r2mA 32 :A Number of specific fragments extracted= 2 number of extra gaps= 3 total=38641 # 1cvrA.278.148 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)K283 (1cvrA)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 278 :EYSQF 1cvrA 149 :ASAEG T0547 284 :NEK 1cvrA 155 :PSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38643 # 1fvkA.278.161 read from T0547.t2k.many.frag # found chain 1fvkA in training set Warning: unaligning (T0547)E278 (1fvkA)N162 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1fvkA)N170 because E (beta_S) conformation "forbidden" or filtered. T0547 279 :YSQFKNE 1fvkA 163 :PQGMDTS Number of specific fragments extracted= 1 number of extra gaps= 2 total=38644 # 2bmaA.278.217 read from T0547.t2k.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)F282 (2bmaA)G200 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (2bmaA)L204 because L (left) conformation "forbidden" or filtered. T0547 278 :EYSQ 2bmaA 196 :NVKW T0547 283 :KNE 2bmaA 201 :GSN Number of specific fragments extracted= 2 number of extra gaps= 2 total=38646 # 1h6fA.278.40 read from T0547.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)K283 (1h6fA)D144 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1h6fA)A147 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYSQF 1h6fA 139 :RCSGL T0547 284 :NE 1h6fA 145 :KK Number of specific fragments extracted= 2 number of extra gaps= 2 total=38648 # 1vjjA.278.238 read from T0547.t2k.many.frag # found chain 1vjjA in template set Warning: unaligning (T0547)E278 (1vjjA)T239 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1vjjA)G242 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1vjjA)D245 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YS 1vjjA 240 :YT T0547 282 :FK 1vjjA 243 :GR T0547 285 :EK 1vjjA 246 :PR Number of specific fragments extracted= 3 number of extra gaps= 3 total=38651 # 1qu9A.278.35 read from T0547.t2k.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE in next template residue (1qu9A)D45 T0547 278 :EYSQFKNE 1qu9A 36 :NPKTGEVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=38652 # 1iu4A.278.159 read from T0547.t2k.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)A166 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)A166 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1iu4A)R167 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1iu4A)P169 T0547 278 :EYSQF 1iu4A 160 :ALRNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=38653 # 1dk0A.278.5 read from T0547.t2k.many.frag # found chain 1dk0A in training set T0547 278 :EYSQFKNEK 1dk0A 6 :NYDSSFGGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38654 # 2d1eA.278.6 read from T0547.t2k.many.frag # found chain 2d1eA in training set Warning: unaligning (T0547)E278 because of BadResidue code BAD_PEPTIDE at template residue (2d1eA)S7 T0547 279 :YSQFKNEK 2d1eA 8 :LTNSSLMP Number of specific fragments extracted= 1 number of extra gaps= 1 total=38655 # 1c4rA.278.18 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)N284 (1c4rA)R105 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYSQFK 1c4rA 99 :KWPPND T0547 285 :EK 1c4rA 106 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=38657 # 1qsgA.278.147 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)E285 (1qsgA)A152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1qsgA)I153 because E (beta_S) conformation "forbidden" or filtered. T0547 278 :EYSQFKN 1qsgA 145 :SYLGAER Number of specific fragments extracted= 1 number of extra gaps= 1 total=38658 # 1bouB.278.195 read from T0547.t2k.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)Q281 (1bouB)G199 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1bouB)L204 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYS 1bouB 196 :QLQ T0547 282 :FKNE 1bouB 200 :PRAG Number of specific fragments extracted= 2 number of extra gaps= 2 total=38660 # 1dabA.278.151 read from T0547.t2k.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)E278 (1dabA)G152 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1dabA)L154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1dabA)S156 because L (left) conformation "forbidden" or filtered. T0547 279 :Y 1dabA 153 :A T0547 281 :Q 1dabA 155 :Q T0547 283 :KNEK 1dabA 157 :LQPE Number of specific fragments extracted= 3 number of extra gaps= 3 total=38663 # 1jykA.278.37 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)Q281 (1jykA)P21 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1jykA)T23 because G (3-10) conformation "forbidden" or filtered. T0547 278 :EYS 1jykA 18 :RLR T0547 282 :F 1jykA 22 :L T0547 284 :NEK 1jykA 24 :ENT Number of specific fragments extracted= 3 number of extra gaps= 2 total=38666 # 1xgkA.278.116 read from T0547.t2k.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)Q281 (1xgkA)G120 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1xgkA)V125 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYS 1xgkA 117 :SLY T0547 282 :FKNE 1xgkA 121 :PWPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=38668 # 1iuqA.278.236 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)E285 (1iuqA)W245 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYSQFKN 1iuqA 238 :PDPSTGE T0547 286 :K 1iuqA 246 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=38670 # 1nu0A.278.63 read from T0547.t2k.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)Q281 (1nu0A)G67 because T (delta_L) conformation "forbidden" or filtered. T0547 278 :EYS 1nu0A 64 :NMD T0547 282 :FKNEK 1nu0A 68 :TEQPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=38672 # 1c93A.278.129 read from T0547.t2k.many.frag # found chain 1c93A in template set Warning: unaligning (T0547)F282 (1c93A)N139 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1c93A)G140 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1c93A)A142 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYSQ 1c93A 135 :EYGN T0547 284 :N 1c93A 141 :T T0547 286 :K 1c93A 143 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=38675 # 1tqhA.278.216 read from T0547.t2k.many.frag # found chain 1tqhA in training set T0547 278 :EYSQFKNEK 1tqhA 217 :WYEQSGHVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38676 # 1ayoA.278.30 read from T0547.t2k.many.frag # found chain 1ayoA in template set Warning: unaligning (T0547)E285 (1ayoA)A40 because Y (epsilon') conformation "forbidden" or filtered. T0547 278 :EYSQFKN 1ayoA 33 :SYIGSRP T0547 286 :K 1ayoA 41 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=38678 # 1ztpA.278.81 read from T0547.t2k.many.frag # found chain 1ztpA in template set Warning: unaligning (T0547)Q281 (1ztpA)G85 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1ztpA)N89 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ztpA)N89 T0547 278 :EYS 1ztpA 82 :YGQ T0547 282 :FK 1ztpA 86 :YS T0547 286 :K 1ztpA 90 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=38681 # 1v2xA.278.142 read from T0547.t2k.many.frag # found chain 1v2xA in training set Warning: unaligning (T0547)Q281 (1v2xA)G146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1v2xA)S150 because Y (epsilon') conformation "forbidden" or filtered. T0547 278 :EYS 1v2xA 143 :PML T0547 282 :FKN 1v2xA 147 :MVQ T0547 286 :K 1v2xA 151 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=38684 # 1izmA.279.140 read from T0547.t2k.many.frag # found chain 1izmA in template set Warning: unaligning (T0547)S280 (1izmA)D140 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1izmA)E141 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1izmA)N144 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1izmA)E145 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :Y 1izmA 139 :Y T0547 282 :FK 1izmA 142 :DD T0547 286 :KS 1izmA 146 :EE Number of specific fragments extracted= 3 number of extra gaps= 2 total=38687 # 1knwA.279.231 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)F282 (1knwA)G235 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1knwA)E236 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1knwA)A238 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQ 1knwA 232 :YQQ T0547 284 :N 1knwA 237 :E T0547 286 :KS 1knwA 239 :VD Number of specific fragments extracted= 3 number of extra gaps= 2 total=38690 # 1ydgA.279.172 read from T0547.t2k.many.frag # found chain 1ydgA in template set Warning: unaligning (T0547)Q281 (1ydgA)G173 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1ydgA)L176 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YS 1ydgA 171 :AN T0547 282 :FK 1ydgA 174 :QP T0547 285 :EKS 1ydgA 177 :LEN Number of specific fragments extracted= 3 number of extra gaps= 2 total=38693 1rq2A expands to /projects/compbio/data/pdb/1rq2.pdb.gz 1rq2A:Skipped atom 289, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 291, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 293, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 295, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 297, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 299, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 301, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 303, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 637, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 639, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 733, because occupancy 0.330 <= existing 0.330 in 1rq2A Skipped atom 734, because occupancy 0.330 <= existing 0.330 in 1rq2A Skipped atom 906, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 908, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 910, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 912, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 914, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 916, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1237, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1503, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1505, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1527, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1538, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1540, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1542, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1603, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1770, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1772, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1774, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1776, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1778, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1780, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1782, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1784, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1844, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1846, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1848, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 2041, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 2043, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 2045, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 2135, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 2137, because occupancy 0.500 <= existing 0.500 in 1rq2A # 1rq2A.279.169 read from T0547.t2k.many.frag # adding 1rq2A to template set # found chain 1rq2A in template set Warning: unaligning (T0547)F282 (1rq2A)G170 because S (epsilon) conformation "forbidden" or filtered. T0547 279 :YSQ 1rq2A 167 :LQM T0547 283 :KNEKS 1rq2A 171 :DAAVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=38695 # 1cvrA.279.149 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)F282 (1cvrA)G153 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1cvrA)A157 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQ 1cvrA 150 :SAE T0547 283 :KNE 1cvrA 154 :GPS T0547 287 :S 1cvrA 158 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=38698 # 1zboA.279.70 read from T0547.t2k.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)Q281 (1zboA)H73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1zboA)E75 because Y (epsilon') conformation "forbidden" or filtered. T0547 279 :YS 1zboA 71 :ID T0547 282 :F 1zboA 74 :W T0547 284 :NEKS 1zboA 76 :APMP Number of specific fragments extracted= 3 number of extra gaps= 2 total=38701 # 1iu4A.279.160 read from T0547.t2k.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)A166 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)A166 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1iu4A)R167 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1iu4A)P169 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1iu4A)P169 T0547 279 :YSQF 1iu4A 161 :LRNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=38702 # 1qu9A.279.36 read from T0547.t2k.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE in next template residue (1qu9A)D45 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1qu9A)D45 T0547 279 :YSQFKNE 1qu9A 37 :PKTGEVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=38703 # 1onrA.279.263 read from T0547.t2k.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)K283 (1onrA)V269 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1onrA)K270 because E (beta_S) conformation "forbidden" or filtered. T0547 279 :YSQF 1onrA 265 :YTGE T0547 285 :EKS 1onrA 271 :ARP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38705 # 1fvkA.279.162 read from T0547.t2k.many.frag # found chain 1fvkA in training set Warning: unaligning (T0547)K283 (1fvkA)D167 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQF 1fvkA 163 :PQGM T0547 284 :NEKS 1fvkA 168 :TSNM Number of specific fragments extracted= 2 number of extra gaps= 1 total=38707 # 2tpsA.279.149 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)F282 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)T162 Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE at template residue (2tpsA)T162 Warning: unaligning (T0547)E285 (2tpsA)A164 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQ 2tpsA 158 :TKK T0547 284 :N 2tpsA 163 :R T0547 286 :KS 2tpsA 165 :VQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=38710 # 1qsgA.279.148 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)E285 (1qsgA)A152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1qsgA)P154 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQFKN 1qsgA 146 :YLGAER T0547 286 :K 1qsgA 153 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=38712 # 1r2mA.279.25 read from T0547.t2k.many.frag # found chain 1r2mA in template set Warning: unaligning (T0547)K283 (1r2mA)T30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1r2mA)A32 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQF 1r2mA 26 :CKTP T0547 284 :N 1r2mA 31 :I T0547 286 :KS 1r2mA 33 :VD Number of specific fragments extracted= 3 number of extra gaps= 2 total=38715 # 2bmaA.279.218 read from T0547.t2k.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)Q281 (2bmaA)W199 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (2bmaA)G201 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YS 2bmaA 197 :VK T0547 282 :F 2bmaA 200 :G T0547 284 :NEKS 2bmaA 202 :SNLR Number of specific fragments extracted= 3 number of extra gaps= 2 total=38718 # 1t56A.279.186 read from T0547.t2k.many.frag # found chain 1t56A in training set Warning: unaligning (T0547)Q281 (1t56A)G189 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1t56A)P192 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1t56A)V194 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YS 1t56A 187 :FA T0547 282 :FK 1t56A 190 :EQ T0547 285 :E 1t56A 193 :S T0547 287 :S 1t56A 195 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=38722 # 2d1eA.279.7 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 279 :YSQFKNEKS 2d1eA 8 :LTNSSLMPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38723 # 256bA.279.47 read from T0547.t2k.many.frag # found chain 256bA in training set T0547 279 :YSQFKNEKS 256bA 48 :LEDKSPDSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38724 # 1iuqA.279.237 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)K283 (1iuqA)G243 because T (delta_L) conformation "forbidden" or filtered. T0547 279 :YSQF 1iuqA 239 :DPST T0547 284 :NEKS 1iuqA 244 :EWYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38726 1u19A expands to /projects/compbio/data/pdb/1u19.pdb.gz 1u19A:# 1u19A.279.234 read from T0547.t2k.many.frag # adding 1u19A to template set # found chain 1u19A in template set Warning: unaligning (T0547)S280 (1u19A)A235 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1u19A)E239 because G (3-10) conformation "forbidden" or filtered. T0547 279 :Y 1u19A 234 :A T0547 281 :QFK 1u19A 236 :QQQ T0547 285 :EKS 1u19A 240 :SAT Number of specific fragments extracted= 3 number of extra gaps= 2 total=38729 # 1nu0A.279.64 read from T0547.t2k.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)Q281 (1nu0A)G67 because T (delta_L) conformation "forbidden" or filtered. T0547 279 :YS 1nu0A 65 :MD T0547 282 :FKNEKS 1nu0A 68 :TEQPLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=38731 # 1bouB.279.196 read from T0547.t2k.many.frag # found chain 1bouB in template set T0547 279 :YSQFKNEKS 1bouB 197 :LQGPRAGLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38732 # 1kveB.279.12 read from T0547.t2k.many.frag # found chain 1kveB in training set Warning: unaligning (T0547)E285 (1kveB)T164 because E (beta_S) conformation "forbidden" or filtered. T0547 279 :YSQFKN 1kveB 158 :EAIDKG T0547 286 :KS 1kveB 165 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=38734 1zgmA expands to /projects/compbio/data/pdb/1zgm.pdb.gz 1zgmA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1543, because occupancy 0.500 <= existing 0.500 in 1zgmA Skipped atom 1545, because occupancy 0.500 <= existing 0.500 in 1zgmA Skipped atom 1547, because occupancy 0.500 <= existing 0.500 in 1zgmA Skipped atom 1549, because occupancy 0.500 <= existing 0.500 in 1zgmA # 1zgmA.279.124 read from T0547.t2k.many.frag # adding 1zgmA to template set # found chain 1zgmA in template set Warning: unaligning (T0547)Q281 (1zgmA)N115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1zgmA)G116 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1zgmA)G117 because Y (epsilon') conformation "forbidden" or filtered. T0547 279 :YS 1zgmA 113 :TL T0547 284 :NEKS 1zgmA 118 :REMW Number of specific fragments extracted= 2 number of extra gaps= 1 total=38736 1txoA expands to /projects/compbio/data/pdb/1txo.pdb.gz 1txoA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1txoA.279.56 read from T0547.t2k.many.frag # adding 1txoA to template set # found chain 1txoA in template set Warning: unaligning (T0547)K283 (1txoA)E64 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQF 1txoA 60 :LDDD T0547 284 :NEKS 1txoA 65 :PGGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38738 # 1xgkA.279.117 read from T0547.t2k.many.frag # found chain 1xgkA in training set T0547 279 :YSQFKNEKS 1xgkA 118 :LYGPWPAVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38739 # 1dqtA.279.22 read from T0547.t2k.many.frag # found chain 1dqtA in template set Warning: unaligning (T0547)Q281 (1dqtA)P25 because C (cis) conformation "forbidden" or filtered. T0547 279 :YS 1dqtA 23 :YS T0547 282 :FKNEKS 1dqtA 26 :SHNTDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38741 # 1tt8A.279.12 read from T0547.t2k.many.frag # found chain 1tt8A in training set T0547 279 :YSQFKNEKS 1tt8A 13 :YSKEIPALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38742 # 1c4rA.279.19 read from T0547.t2k.many.frag # found chain 1c4rA in template set T0547 279 :YSQFKNEKS 1c4rA 100 :WPPNDRPST Number of specific fragments extracted= 1 number of extra gaps= 0 total=38743 # 1vjjA.279.239 read from T0547.t2k.many.frag # found chain 1vjjA in template set T0547 279 :YSQFKNEKS 1vjjA 240 :YTGGRDPRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38744 # 1c93A.279.130 read from T0547.t2k.many.frag # found chain 1c93A in template set Warning: unaligning (T0547)F282 (1c93A)N139 because L (left) conformation "forbidden" or filtered. T0547 279 :YSQ 1c93A 136 :YGN T0547 283 :KNEKS 1c93A 140 :GTAQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38746 # 1izmA.280.141 read from T0547.t2k.many.frag # found chain 1izmA in template set Warning: unaligning (T0547)S280 (1izmA)D140 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1izmA)E141 because S (epsilon) conformation "forbidden" or filtered. T0547 282 :FKNEKSR 1izmA 142 :DDNEEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38747 # 1rq2A.280.170 read from T0547.t2k.many.frag # found chain 1rq2A in template set T0547 280 :SQFKNEKSR 1rq2A 168 :QMGDAAVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38748 # 1ydgA.280.173 read from T0547.t2k.many.frag # found chain 1ydgA in template set Warning: unaligning (T0547)Q281 (1ydgA)G173 because T (delta_L) conformation "forbidden" or filtered. T0547 280 :S 1ydgA 172 :N T0547 282 :FKNEKSR 1ydgA 174 :QPLLEND Number of specific fragments extracted= 2 number of extra gaps= 1 total=38750 # 1cvrA.280.150 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)K283 (1cvrA)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 280 :SQF 1cvrA 151 :AEG T0547 284 :NEKSR 1cvrA 155 :PSADN Number of specific fragments extracted= 2 number of extra gaps= 1 total=38752 # 1knwA.280.232 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 280 :SQFKNEKSR 1knwA 233 :QQGEEAVDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38753 # 1iu4A.280.161 read from T0547.t2k.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)A166 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)A166 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1iu4A)R167 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1iu4A)P169 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1iu4A)P169 T0547 280 :SQF 1iu4A 162 :RNE T0547 288 :R 1iu4A 170 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=38755 # 2tpsA.280.150 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)F282 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)T162 Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE at template residue (2tpsA)T162 Warning: unaligning (T0547)E285 (2tpsA)A164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (2tpsA)V165 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (2tpsA)Q166 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (2tpsA)G167 because S (epsilon) conformation "forbidden" or filtered. T0547 280 :SQ 2tpsA 159 :KK T0547 284 :N 2tpsA 163 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=38757 # 1qu9A.280.37 read from T0547.t2k.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE in next template residue (1qu9A)D45 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1qu9A)D45 T0547 280 :SQFKNE 1qu9A 38 :KTGEVP T0547 288 :R 1qu9A 46 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=38759 # 1qsgA.280.149 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 280 :SQFKNEKSR 1qsgA 147 :LGAERAIPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38760 # 1t56A.280.187 read from T0547.t2k.many.frag # found chain 1t56A in training set Warning: unaligning (T0547)Q281 (1t56A)G189 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1t56A)P192 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1t56A)S193 because Y (epsilon') conformation "forbidden" or filtered. T0547 280 :S 1t56A 188 :A T0547 282 :FK 1t56A 190 :EQ T0547 286 :KSR 1t56A 194 :VPE Number of specific fragments extracted= 3 number of extra gaps= 2 total=38763 # 1u19A.280.235 read from T0547.t2k.many.frag # found chain 1u19A in template set Warning: unaligning (T0547)K283 (1u19A)Q238 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1u19A)A241 because Y (epsilon') conformation "forbidden" or filtered. T0547 280 :SQF 1u19A 235 :AQQ T0547 284 :NE 1u19A 239 :ES T0547 287 :SR 1u19A 242 :TT Number of specific fragments extracted= 3 number of extra gaps= 2 total=38766 # 256bA.280.48 read from T0547.t2k.many.frag # found chain 256bA in training set T0547 280 :SQFKNEKSR 256bA 49 :EDKSPDSPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38767 # 2bmaA.280.219 read from T0547.t2k.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)F282 (2bmaA)G200 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (2bmaA)L204 because L (left) conformation "forbidden" or filtered. T0547 280 :SQ 2bmaA 198 :KW T0547 283 :KNE 2bmaA 201 :GSN T0547 287 :SR 2bmaA 205 :RV Number of specific fragments extracted= 3 number of extra gaps= 2 total=38770 # 1fvkA.280.163 read from T0547.t2k.many.frag # found chain 1fvkA in training set T0547 280 :SQFKNEKSR 1fvkA 164 :QGMDTSNMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38771 # 1zgmA.280.125 read from T0547.t2k.many.frag # found chain 1zgmA in template set Warning: unaligning (T0547)S280 (1zgmA)L114 because L (left) conformation "forbidden" or filtered. T0547 281 :QFKNEKSR 1zgmA 115 :NGGREMWT Number of specific fragments extracted= 1 number of extra gaps= 1 total=38772 # 1nu0A.280.65 read from T0547.t2k.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)S280 (1nu0A)D66 because G (3-10) conformation "forbidden" or filtered. T0547 281 :QFKNEKSR 1nu0A 67 :GTEQPLTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=38773 # 1txoA.280.57 read from T0547.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0547)K283 (1txoA)E64 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQF 1txoA 61 :DDD T0547 284 :NEKSR 1txoA 65 :PGGDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=38775 # 1kveB.280.13 read from T0547.t2k.many.frag # found chain 1kveB in training set T0547 280 :SQFKNEKSR 1kveB 159 :AIDKGTPSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38776 2bvlA expands to /projects/compbio/data/pdb/2bvl.pdb.gz 2bvlA:# 2bvlA.280.159 read from T0547.t2k.many.frag # adding 2bvlA to template set # found chain 2bvlA in template set Warning: unaligning (T0547)F282 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bvlA)D163 Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bvlA)D163 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bvlA)R165 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bvlA)R165 T0547 280 :SQ 2bvlA 160 :NL T0547 286 :KSR 2bvlA 166 :FDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38778 # 1bouB.280.197 read from T0547.t2k.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)Q281 (1bouB)G199 because S (epsilon) conformation "forbidden" or filtered. T0547 280 :S 1bouB 198 :Q T0547 282 :FKNEKSR 1bouB 200 :PRAGLIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=38780 # 1r2mA.280.26 read from T0547.t2k.many.frag # found chain 1r2mA in template set T0547 280 :SQFKNEKSR 1r2mA 27 :KTPTIAVDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38781 # 1onrA.280.264 read from T0547.t2k.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)K283 (1onrA)V269 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQF 1onrA 266 :TGE T0547 284 :NEKSR 1onrA 270 :KARPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38783 # 1aep.280.28 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 280 :SQFKNEKSR 1aep 29 :LGLPTPDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38784 # 1xgkA.280.118 read from T0547.t2k.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)Q281 (1xgkA)G120 because Y (epsilon') conformation "forbidden" or filtered. T0547 280 :S 1xgkA 119 :Y T0547 282 :FKNEKSR 1xgkA 121 :PWPAVPM Number of specific fragments extracted= 2 number of extra gaps= 1 total=38786 1a6i expands to /projects/compbio/data/pdb/1a6i.pdb.gz 1a6i:Warning: there is no chain 1a6i will retry with 1a6iA # 1a6i.280.65 read from T0547.t2k.many.frag # adding 1a6i to template set # found chain 1a6i in template set Warning: unaligning (T0547)Q281 (1a6i)L68 because E (beta_S) conformation "forbidden" or filtered. T0547 280 :S 1a6i 67 :S T0547 282 :FKNEKSR 1a6i 69 :PAAGESW Number of specific fragments extracted= 2 number of extra gaps= 1 total=38788 # 1j3wA.280.47 read from T0547.t2k.many.frag # found chain 1j3wA in training set T0547 280 :SQFKNEKSR 1j3wA 48 :LWAPKPPPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38789 # 2d1eA.280.8 read from T0547.t2k.many.frag # found chain 2d1eA in training set Warning: unaligning (T0547)R288 (2d1eA)L17 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQFKNEKS 2d1eA 9 :TNSSLMPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=38790 # 1iuqA.280.238 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)S287 (1iuqA)P247 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQFKNEK 1iuqA 240 :PSTGEWY T0547 288 :R 1iuqA 248 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=38792 # 1tt8A.280.13 read from T0547.t2k.many.frag # found chain 1tt8A in training set Warning: unaligning (T0547)K286 (1tt8A)L20 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1tt8A)D21 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQFKNE 1tt8A 14 :SKEIPA T0547 288 :R 1tt8A 22 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=38794 1aisB expands to /projects/compbio/data/pdb/1ais.pdb.gz 1aisB:# 1aisB.280.99 read from T0547.t2k.many.frag # adding 1aisB to template set # found chain 1aisB in template set T0547 280 :SQFKNEKSR 1aisB 1200 :TPKKLFVKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38795 # 1rq2A.281.171 read from T0547.t2k.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)Q281 (1rq2A)M169 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1rq2A)G170 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1rq2A)V174 because P (beta_P) conformation "forbidden" or filtered. T0547 283 :KNE 1rq2A 171 :DAA T0547 287 :SRN 1rq2A 175 :SLM Number of specific fragments extracted= 2 number of extra gaps= 2 total=38797 # 1izmA.281.142 read from T0547.t2k.many.frag # found chain 1izmA in template set Warning: unaligning (T0547)Q281 (1izmA)E141 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1izmA)E145 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :FKN 1izmA 142 :DDN T0547 286 :KSRN 1izmA 146 :EELA Number of specific fragments extracted= 2 number of extra gaps= 2 total=38799 # 1cvrA.281.151 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)F282 (1cvrA)G153 because S (epsilon) conformation "forbidden" or filtered. T0547 281 :Q 1cvrA 152 :E T0547 283 :KNEKSRN 1cvrA 154 :GPSADNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38801 # 1ydgA.281.174 read from T0547.t2k.many.frag # found chain 1ydgA in template set Warning: unaligning (T0547)Q281 (1ydgA)G173 because T (delta_L) conformation "forbidden" or filtered. T0547 282 :FKNEKSRN 1ydgA 174 :QPLLENDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=38802 # 1iu4A.281.162 read from T0547.t2k.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)A166 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)A166 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1iu4A)R167 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1iu4A)P169 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1iu4A)P169 T0547 281 :QF 1iu4A 163 :NE T0547 288 :RN 1iu4A 170 :FY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38804 # 2bvlA.281.160 read from T0547.t2k.many.frag # found chain 2bvlA in template set Warning: unaligning (T0547)F282 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bvlA)D163 Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bvlA)D163 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bvlA)R165 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bvlA)R165 T0547 281 :Q 2bvlA 161 :L T0547 286 :KSRN 2bvlA 166 :FDYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=38806 # 1t56A.281.188 read from T0547.t2k.many.frag # found chain 1t56A in training set Warning: unaligning (T0547)Q281 (1t56A)G189 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1t56A)Q191 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1t56A)P192 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1t56A)P195 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :F 1t56A 190 :E T0547 285 :EK 1t56A 193 :SV T0547 288 :RN 1t56A 196 :EA Number of specific fragments extracted= 3 number of extra gaps= 3 total=38809 # 1qu9A.281.38 read from T0547.t2k.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE in next template residue (1qu9A)D45 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1qu9A)D45 T0547 281 :QFKNE 1qu9A 39 :TGEVP T0547 288 :RN 1qu9A 46 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38811 # 1qsgA.281.150 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 281 :QFKNEKSRN 1qsgA 148 :GAERAIPNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38812 # 1txoA.281.58 read from T0547.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0547)E285 (1txoA)G66 because S (epsilon) conformation "forbidden" or filtered. T0547 281 :QFKN 1txoA 62 :DDEP T0547 286 :KSRN 1txoA 67 :GDLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=38814 # 1u19A.281.236 read from T0547.t2k.many.frag # found chain 1u19A in template set T0547 281 :QFKNEKSRN 1u19A 236 :QQQESATTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38815 # 256bA.281.49 read from T0547.t2k.many.frag # found chain 256bA in training set T0547 281 :QFKNEKSRN 256bA 50 :DKSPDSPEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=38816 # 2tpsA.281.151 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)F282 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)T162 Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE at template residue (2tpsA)T162 T0547 281 :Q 2tpsA 160 :K T0547 284 :NEKSRN 2tpsA 163 :RAVQGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=38818 # 1knwA.281.233 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q281 (1knwA)Q234 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1knwA)G235 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1knwA)E237 because P (beta_P) conformation "forbidden" or filtered. T0547 283 :K 1knwA 236 :E T0547 285 :EKSRN 1knwA 238 :AVDTE Number of specific fragments extracted= 2 number of extra gaps= 2 total=38820 # 1kveB.281.14 read from T0547.t2k.many.frag # found chain 1kveB in training set Warning: unaligning (T0547)Q281 (1kveB)I160 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :FKNEKSRN 1kveB 161 :DKGTPSKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=38821 # 1j3wA.281.48 read from T0547.t2k.many.frag # found chain 1j3wA in training set T0547 281 :QFKNEKSRN 1j3wA 49 :WAPKPPPLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38822 # 2pth.281.149 read from T0547.t2k.many.frag # found chain 2pth in training set Warning: unaligning (T0547)N284 (2pth)P153 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (2pth)P154 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QFK 2pth 150 :LGK T0547 286 :KSRN 2pth 155 :VSEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=38824 # 1xgkA.281.119 read from T0547.t2k.many.frag # found chain 1xgkA in training set T0547 281 :QFKNEKSRN 1xgkA 120 :GPWPAVPMW Number of specific fragments extracted= 1 number of extra gaps= 0 total=38825 # 1zgmA.281.126 read from T0547.t2k.many.frag # found chain 1zgmA in template set Warning: unaligning (T0547)Q281 (1zgmA)N115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1zgmA)G116 because L (left) conformation "forbidden" or filtered. T0547 283 :KNEKSRN 1zgmA 117 :GREMWTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=38826 # 1aep.281.29 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 281 :QFKNEKSRN 1aep 30 :GLPTPDEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38827 # 2bmaA.281.220 read from T0547.t2k.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)Q281 (2bmaA)W199 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (2bmaA)G200 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (2bmaA)L204 because L (left) conformation "forbidden" or filtered. T0547 283 :KNE 2bmaA 201 :GSN T0547 287 :SRN 2bmaA 205 :RVE Number of specific fragments extracted= 2 number of extra gaps= 2 total=38829 # 1aisB.281.100 read from T0547.t2k.many.frag # found chain 1aisB in template set T0547 281 :QFKNEKSRN 1aisB 1201 :PKKLFVKPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38830 # 1r2mA.281.27 read from T0547.t2k.many.frag # found chain 1r2mA in template set Warning: unaligning (T0547)E285 (1r2mA)A32 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QFKN 1r2mA 28 :TPTI T0547 286 :KSRN 1r2mA 33 :VDTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38832 # 1a6i.281.66 read from T0547.t2k.many.frag # found chain 1a6i in template set Warning: unaligning (T0547)E285 (1a6i)G72 because L (left) conformation "forbidden" or filtered. T0547 281 :QFKN 1a6i 68 :LPAA T0547 286 :KSRN 1a6i 73 :ESWQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=38834 # 1nu0A.281.66 read from T0547.t2k.many.frag # found chain 1nu0A in training set T0547 281 :QFKNEKSRN 1nu0A 67 :GTEQPLTAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38835 # 1bouB.281.198 read from T0547.t2k.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)E285 (1bouB)G203 because T (delta_L) conformation "forbidden" or filtered. T0547 281 :QFKN 1bouB 199 :GPRA T0547 286 :KSRN 1bouB 204 :LINK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38837 # 2akaB.281.139 read from T0547.t2k.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)K283 (2akaB)D147 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (2akaB)P149 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (2akaB)D151 because G (3-10) conformation "forbidden" or filtered. T0547 281 :QF 2akaB 145 :VG T0547 284 :N 2akaB 148 :Q T0547 286 :K 2akaB 150 :P T0547 288 :RN 2akaB 152 :IE Number of specific fragments extracted= 4 number of extra gaps= 3 total=38841 1umwA expands to /projects/compbio/data/pdb/1umw.pdb.gz 1umwA:# 1umwA.281.134 read from T0547.t2k.many.frag # adding 1umwA to template set # found chain 1umwA in template set T0547 281 :QFKNEKSRN 1umwA 501 :EGDELARLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38842 # 2d1eA.281.9 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 281 :QFKNEKSRN 2d1eA 10 :NSSLMPTLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38843 # 1tt8A.281.14 read from T0547.t2k.many.frag # found chain 1tt8A in training set Warning: unaligning (T0547)K286 (1tt8A)L20 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QFKNE 1tt8A 15 :KEIPA T0547 287 :SRN 1tt8A 21 :DPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=38845 # 1rq2A.282.172 read from T0547.t2k.many.frag # found chain 1rq2A in template set T0547 282 :FKNEKSRNY 1rq2A 170 :GDAAVSLMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38846 # 1izmA.282.143 read from T0547.t2k.many.frag # found chain 1izmA in template set T0547 282 :FKNEKSRNY 1izmA 142 :DDNEEELAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38847 # 1cvrA.282.152 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)K283 (1cvrA)G154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1cvrA)A157 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :F 1cvrA 153 :G T0547 284 :NE 1cvrA 155 :PS T0547 287 :SRNY 1cvrA 158 :DNGE Number of specific fragments extracted= 3 number of extra gaps= 2 total=38850 # 2bvlA.282.161 read from T0547.t2k.many.frag # found chain 2bvlA in template set Warning: unaligning (T0547)F282 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bvlA)D163 Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bvlA)D163 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bvlA)R165 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bvlA)R165 T0547 286 :KSRNY 2bvlA 166 :FDYNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=38851 # 1iu4A.282.163 read from T0547.t2k.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)A166 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)A166 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1iu4A)R167 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1iu4A)P169 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1iu4A)P169 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)A173 T0547 282 :F 1iu4A 164 :E T0547 288 :RN 1iu4A 170 :FY Number of specific fragments extracted= 2 number of extra gaps= 2 total=38853 # 1qu9A.282.39 read from T0547.t2k.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)F282 (1qu9A)G40 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE in next template residue (1qu9A)D45 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1qu9A)D45 T0547 283 :KNE 1qu9A 41 :EVP T0547 288 :RNY 1qu9A 46 :VAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=38855 # 1t56A.282.189 read from T0547.t2k.many.frag # found chain 1t56A in training set Warning: unaligning (T0547)N284 (1t56A)P192 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1t56A)S193 because Y (epsilon') conformation "forbidden" or filtered. T0547 282 :FK 1t56A 190 :EQ T0547 286 :KSRNY 1t56A 194 :VPEAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=38857 # 1ydgA.282.175 read from T0547.t2k.many.frag # found chain 1ydgA in template set Warning: unaligning (T0547)K283 (1ydgA)P175 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :F 1ydgA 174 :Q T0547 284 :NEKSRNY 1ydgA 176 :LLENDRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38859 # 1u19A.282.237 read from T0547.t2k.many.frag # found chain 1u19A in template set Warning: unaligning (T0547)K286 (1u19A)A241 because Y (epsilon') conformation "forbidden" or filtered. T0547 282 :FKNE 1u19A 237 :QQES T0547 287 :SRNY 1u19A 242 :TTQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38861 # 1txoA.282.59 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 282 :FKNEKSRNY 1txoA 63 :DEPGGDLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38862 # 1vns.282.12 read from T0547.t2k.many.frag # found chain 1vns in training set Warning: unaligning (T0547)N284 (1vns)P15 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :FK 1vns 13 :DE T0547 285 :EKSRNY 1vns 16 :EEYNTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=38864 # 2pth.282.150 read from T0547.t2k.many.frag # found chain 2pth in training set Warning: unaligning (T0547)K283 (2pth)K152 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :F 2pth 151 :G T0547 284 :NEKSRNY 2pth 153 :PPVSEQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38866 # 1qsgA.282.151 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 282 :FKNEKSRNY 1qsgA 149 :AERAIPNYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38867 # 1bu8A.282.239 read from T0547.t2k.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)E285 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1bu8A)L242 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1bu8A)L242 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)S243 Warning: unaligning (T0547)R288 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (1bu8A)T244 Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bu8A)I245 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)V246 T0547 282 :FKN 1bu8A 238 :QKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=38868 # 256bA.282.50 read from T0547.t2k.many.frag # found chain 256bA in training set T0547 282 :FKNEKSRNY 256bA 51 :KSPDSPEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38869 # 1aisB.282.101 read from T0547.t2k.many.frag # found chain 1aisB in template set Warning: unaligning (T0547)E285 (1aisB)F1205 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :FKN 1aisB 1202 :KKL T0547 286 :KSRNY 1aisB 1206 :VKPTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38871 # 1zgmA.282.127 read from T0547.t2k.many.frag # found chain 1zgmA in template set Warning: unaligning (T0547)F282 (1zgmA)G116 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1zgmA)G117 because Y (epsilon') conformation "forbidden" or filtered. T0547 284 :NEKSRNY 1zgmA 118 :REMWTPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=38872 # 1kveB.282.15 read from T0547.t2k.many.frag # found chain 1kveB in training set T0547 282 :FKNEKSRNY 1kveB 161 :DKGTPSKND Number of specific fragments extracted= 1 number of extra gaps= 0 total=38873 1to6A expands to /projects/compbio/data/pdb/1to6.pdb.gz 1to6A:# 1to6A.282.337 read from T0547.t2k.many.frag # adding 1to6A to template set # found chain 1to6A in template set Warning: unaligning (T0547)N284 (1to6A)K340 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1to6A)E342 because Y (epsilon') conformation "forbidden" or filtered. T0547 282 :FK 1to6A 338 :LE T0547 285 :E 1to6A 341 :S T0547 287 :SRNY 1to6A 343 :PLED Number of specific fragments extracted= 3 number of extra gaps= 2 total=38876 # 1xgkA.282.120 read from T0547.t2k.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)N284 (1xgkA)P123 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :FK 1xgkA 121 :PW T0547 285 :EKSRNY 1xgkA 124 :AVPMWA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38878 # 1sdiA.282.74 read from T0547.t2k.many.frag # found chain 1sdiA in training set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1sdiA)S77 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1sdiA)S77 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE at template residue (1sdiA)R78 Warning: unaligning (T0547)K286 (1sdiA)Q79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1sdiA)G80 because S (epsilon) conformation "forbidden" or filtered. T0547 282 :F 1sdiA 75 :A T0547 288 :RNY 1sdiA 81 :LNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38880 # 1aep.282.30 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 282 :FKNEKSRNY 1aep 31 :LPTPDEALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38881 # 2tpsA.282.152 read from T0547.t2k.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)F282 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)T162 Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE at template residue (2tpsA)T162 Warning: unaligning (T0547)E285 (2tpsA)A164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (2tpsA)Q166 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (2tpsA)G167 because S (epsilon) conformation "forbidden" or filtered. T0547 284 :N 2tpsA 163 :R T0547 286 :K 2tpsA 165 :V T0547 289 :NY 2tpsA 168 :VS Number of specific fragments extracted= 3 number of extra gaps= 3 total=38884 1otkA expands to /projects/compbio/data/pdb/1otk.pdb.gz 1otkA:# 1otkA.282.28 read from T0547.t2k.many.frag # adding 1otkA to template set # found chain 1otkA in template set T0547 282 :FKNEKSRNY 1otkA 29 :HAPELEIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38885 # 1umwA.282.135 read from T0547.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0547)N284 (1umwA)E504 because T (delta_L) conformation "forbidden" or filtered. T0547 282 :FK 1umwA 502 :GD T0547 285 :EKSRNY 1umwA 505 :LARLPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38887 # 1j3wA.282.49 read from T0547.t2k.many.frag # found chain 1j3wA in training set Warning: unaligning (T0547)K283 (1j3wA)P51 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :F 1j3wA 50 :A T0547 284 :NEKSRNY 1j3wA 52 :KPPPLDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=38889 # 1vlaA.282.44 read from T0547.t2k.many.frag # found chain 1vlaA in training set Warning: unaligning (T0547)F282 (1vlaA)D33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1vlaA)A35 because Y (epsilon') conformation "forbidden" or filtered. T0547 283 :K 1vlaA 34 :A T0547 285 :EKSRNY 1vlaA 36 :PRPLEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=38891 # 2bmaA.282.221 read from T0547.t2k.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)K286 (2bmaA)L204 because L (left) conformation "forbidden" or filtered. T0547 282 :FKNE 2bmaA 200 :GGSN T0547 287 :SRNY 2bmaA 205 :RVEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38893 # 1iuqA.282.240 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)N289 (1iuqA)P249 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :FKNEKSR 1iuqA 242 :TGEWYPA T0547 290 :Y 1iuqA 250 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=38895 # 1wer.282.121 read from T0547.t2k.many.frag # found chain 1wer in training set Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE in next template residue (1wer)N838 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE at template residue (1wer)N838 Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE at template residue (1wer)E839 T0547 282 :FK 1wer 835 :LE T0547 287 :SRNY 1wer 840 :DVNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=38897 # 1rq2A.283.173 read from T0547.t2k.many.frag # found chain 1rq2A in template set T0547 283 :KNEKSRNYT 1rq2A 171 :DAAVSLMDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38898 # 1cvrA.283.153 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)K286 (1cvrA)A157 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1cvrA)N159 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1cvrA)G160 because L (left) conformation "forbidden" or filtered. T0547 283 :KNE 1cvrA 154 :GPS T0547 287 :S 1cvrA 158 :D T0547 290 :YT 1cvrA 161 :ES Number of specific fragments extracted= 3 number of extra gaps= 2 total=38901 # 1izmA.283.144 read from T0547.t2k.many.frag # found chain 1izmA in template set T0547 283 :KNEKSRNYT 1izmA 143 :DNEEELAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38902 # 1iu4A.283.164 read from T0547.t2k.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)A166 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)A166 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1iu4A)R167 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1iu4A)P169 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1iu4A)P169 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)A173 Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)A173 T0547 288 :RN 1iu4A 170 :FY Number of specific fragments extracted= 1 number of extra gaps= 2 total=38903 # 2bvlA.283.162 read from T0547.t2k.many.frag # found chain 2bvlA in template set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bvlA)D163 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bvlA)R165 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bvlA)R165 T0547 286 :KSRNYT 2bvlA 166 :FDYNKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=38904 # 1t56A.283.190 read from T0547.t2k.many.frag # found chain 1t56A in training set Warning: unaligning (T0547)N284 (1t56A)P192 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1t56A)S193 because Y (epsilon') conformation "forbidden" or filtered. T0547 283 :K 1t56A 191 :Q T0547 286 :KSRNYT 1t56A 194 :VPEARV Number of specific fragments extracted= 2 number of extra gaps= 1 total=38906 # 1vns.283.13 read from T0547.t2k.many.frag # found chain 1vns in training set T0547 283 :KNEKSRNYT 1vns 14 :EPEEYNTNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38907 # 1ydgA.283.176 read from T0547.t2k.many.frag # found chain 1ydgA in template set T0547 283 :KNEKSRNYT 1ydgA 175 :PLLENDRAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38908 # 1qsgA.283.152 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)R288 (1qsgA)N155 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y290 (1qsgA)N157 because S (epsilon) conformation "forbidden" or filtered. T0547 283 :KNEKS 1qsgA 150 :ERAIP T0547 289 :N 1qsgA 156 :Y T0547 291 :T 1qsgA 158 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=38911 # 1qu9A.283.40 read from T0547.t2k.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE in next template residue (1qu9A)D45 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1qu9A)D45 T0547 283 :KNE 1qu9A 41 :EVP T0547 288 :RNYT 1qu9A 46 :VAAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=38913 # 1aep.283.31 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 283 :KNEKSRNYT 1aep 32 :PTPDEALNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38914 # 1aisB.283.102 read from T0547.t2k.many.frag # found chain 1aisB in template set T0547 283 :KNEKSRNYT 1aisB 1203 :KLFVKPTDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38915 # 1to6A.283.338 read from T0547.t2k.many.frag # found chain 1to6A in template set Warning: unaligning (T0547)N284 (1to6A)K340 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1to6A)P343 because P (beta_P) conformation "forbidden" or filtered. T0547 283 :K 1to6A 339 :E T0547 285 :EK 1to6A 341 :SE T0547 288 :RNYT 1to6A 344 :LEDS Number of specific fragments extracted= 3 number of extra gaps= 2 total=38918 # 1u19A.283.238 read from T0547.t2k.many.frag # found chain 1u19A in template set Warning: unaligning (T0547)K286 (1u19A)A241 because Y (epsilon') conformation "forbidden" or filtered. T0547 283 :KNE 1u19A 238 :QES T0547 287 :SRNYT 1u19A 242 :TTQKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38920 # 1sdiA.283.75 read from T0547.t2k.many.frag # found chain 1sdiA in training set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1sdiA)S77 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1sdiA)S77 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE at template residue (1sdiA)R78 Warning: unaligning (T0547)K286 (1sdiA)Q79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1sdiA)G80 because S (epsilon) conformation "forbidden" or filtered. T0547 288 :RNYT 1sdiA 81 :LNAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=38921 # 1a6i.283.68 read from T0547.t2k.many.frag # found chain 1a6i in template set T0547 283 :KNEKSRNYT 1a6i 70 :AAGESWQSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38922 # 2pth.283.151 read from T0547.t2k.many.frag # found chain 2pth in training set T0547 283 :KNEKSRNYT 2pth 152 :KPPVSEQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38923 # 1h6kA.283.322 read from T0547.t2k.many.frag # found chain 1h6kA in template set T0547 283 :KNEKSRNYT 1h6kA 342 :KNKIPLNYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=38924 # 1txoA.283.60 read from T0547.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0547)E285 (1txoA)G66 because S (epsilon) conformation "forbidden" or filtered. T0547 283 :KN 1txoA 64 :EP T0547 286 :KSRNYT 1txoA 67 :GDLLAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38926 # 1kveB.283.16 read from T0547.t2k.many.frag # found chain 1kveB in training set T0547 283 :KNEKSRNYT 1kveB 162 :KGTPSKNDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38927 # 1zgmA.283.128 read from T0547.t2k.many.frag # found chain 1zgmA in template set T0547 283 :KNEKSRNYT 1zgmA 117 :GREMWTPEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38928 # 256bA.283.51 read from T0547.t2k.many.frag # found chain 256bA in training set T0547 283 :KNEKSRNYT 256bA 52 :SPDSPEMKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38929 # 1bu8A.283.240 read from T0547.t2k.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)N284 (1bu8A)N240 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1bu8A)L242 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1bu8A)L242 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)S243 Warning: unaligning (T0547)R288 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (1bu8A)T244 Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bu8A)I245 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)V246 Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE in next template residue (1bu8A)I248 T0547 283 :K 1bu8A 239 :K Number of specific fragments extracted= 1 number of extra gaps= 1 total=38930 # 1y7tA.283.92 read from T0547.t2k.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)K283 (1y7tA)K92 because P (beta_P) conformation "forbidden" or filtered. T0547 284 :NEKSRNYT 1y7tA 93 :AGMERRDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38931 1lla expands to /projects/compbio/data/pdb/1lla.pdb.gz 1lla:Warning: there is no chain 1lla will retry with 1llaA # 1lla.283.150 read from T0547.t2k.many.frag # adding 1lla to template set # found chain 1lla in template set T0547 283 :KNEKSRNYT 1lla 151 :GNILDPEYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38932 # 1q7lA.283.7 read from T0547.t2k.many.frag # found chain 1q7lA in training set Warning: unaligning (T0547)K283 (1q7lA)E8 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1q7lA)E9 because Y (epsilon') conformation "forbidden" or filtered. T0547 285 :EKSRNYT 1q7lA 10 :HPSVTLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=38933 # 1xgkA.283.121 read from T0547.t2k.many.frag # found chain 1xgkA in training set T0547 283 :KNEKSRNYT 1xgkA 122 :WPAVPMWAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38934 # 2c71A.283.158 read from T0547.t2k.many.frag # found chain 2c71A in training set Warning: unaligning (T0547)E285 (2c71A)P636 because C (cis) conformation "forbidden" or filtered. T0547 283 :KN 2c71A 634 :PE T0547 286 :KSRNYT 2c71A 637 :HPTPEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38936 # 1j3wA.283.50 read from T0547.t2k.many.frag # found chain 1j3wA in training set T0547 283 :KNEKSRNYT 1j3wA 51 :PKPPPLDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38937 # 1v54H.283.46 read from T0547.t2k.many.frag # found chain 1v54H in training set Warning: unaligning (T0547)K283 (1v54H)G47 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1v54H)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 285 :EKSRNYT 1v54H 49 :DVSVCEW Number of specific fragments extracted= 1 number of extra gaps= 1 total=38938 # 1rq2A.284.174 read from T0547.t2k.many.frag # found chain 1rq2A in template set T0547 284 :NEKSRNYTL 1rq2A 172 :AAVSLMDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38939 # 1cvrA.284.154 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)R288 (1cvrA)N159 because L (left) conformation "forbidden" or filtered. T0547 284 :NEKS 1cvrA 155 :PSAD T0547 289 :NYTL 1cvrA 160 :GESD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38941 # 1sdiA.284.76 read from T0547.t2k.many.frag # found chain 1sdiA in training set Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1sdiA)S77 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE at template residue (1sdiA)R78 Warning: unaligning (T0547)K286 (1sdiA)Q79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1sdiA)G80 because S (epsilon) conformation "forbidden" or filtered. T0547 288 :RNYTL 1sdiA 81 :LNAEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38942 # 1izmA.284.145 read from T0547.t2k.many.frag # found chain 1izmA in template set Warning: unaligning (T0547)N284 (1izmA)N144 because L (left) conformation "forbidden" or filtered. T0547 285 :EKSRNYTL 1izmA 145 :EEELAEAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38943 # 1aep.284.32 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 284 :NEKSRNYTL 1aep 33 :TPDEALNLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38944 # 1qsgA.284.153 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)E285 (1qsgA)A152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y290 (1qsgA)N157 because S (epsilon) conformation "forbidden" or filtered. T0547 284 :N 1qsgA 151 :R T0547 286 :KSRN 1qsgA 153 :IPNY T0547 291 :TL 1qsgA 158 :VM Number of specific fragments extracted= 3 number of extra gaps= 2 total=38947 # 1vns.284.14 read from T0547.t2k.many.frag # found chain 1vns in training set T0547 284 :NEKSRNYTL 1vns 15 :PEEYNTNYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38948 # 1zgmA.284.129 read from T0547.t2k.many.frag # found chain 1zgmA in template set Warning: unaligning (T0547)E285 (1zgmA)E119 because P (beta_P) conformation "forbidden" or filtered. T0547 284 :N 1zgmA 118 :R T0547 286 :KSRNYTL 1zgmA 120 :MWTPEKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=38950 # 1to6A.284.339 read from T0547.t2k.many.frag # found chain 1to6A in template set Warning: unaligning (T0547)N284 (1to6A)K340 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1to6A)E342 because Y (epsilon') conformation "forbidden" or filtered. T0547 285 :E 1to6A 341 :S T0547 287 :SRNYTL 1to6A 343 :PLEDSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=38952 # 1wer.284.123 read from T0547.t2k.many.frag # found chain 1wer in training set Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE in next template residue (1wer)N838 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE at template residue (1wer)N838 Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE at template residue (1wer)E839 T0547 287 :SRNYTL 1wer 840 :DVNTNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38953 # 1aisB.284.103 read from T0547.t2k.many.frag # found chain 1aisB in template set Warning: unaligning (T0547)E285 (1aisB)F1205 because P (beta_P) conformation "forbidden" or filtered. T0547 284 :N 1aisB 1204 :L T0547 286 :KSRNYTL 1aisB 1206 :VKPTDYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=38955 # 1ydgA.284.177 read from T0547.t2k.many.frag # found chain 1ydgA in template set T0547 284 :NEKSRNYTL 1ydgA 176 :LLENDRASI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38956 # 1iu4A.284.165 read from T0547.t2k.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)A166 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1iu4A)R167 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1iu4A)P169 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1iu4A)P169 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)A173 Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)A173 T0547 288 :RN 1iu4A 170 :FY T0547 292 :L 1iu4A 174 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=38958 # 256bA.284.52 read from T0547.t2k.many.frag # found chain 256bA in training set T0547 284 :NEKSRNYTL 256bA 53 :PDSPEMKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38959 # 1a6i.284.69 read from T0547.t2k.many.frag # found chain 1a6i in template set T0547 284 :NEKSRNYTL 1a6i 71 :AGESWQSFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38960 # 1txoA.284.61 read from T0547.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0547)E285 (1txoA)G66 because S (epsilon) conformation "forbidden" or filtered. T0547 284 :N 1txoA 65 :P T0547 286 :KSRNYTL 1txoA 67 :GDLLAKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=38962 # 1qu9A.284.41 read from T0547.t2k.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE in next template residue (1qu9A)D45 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1qu9A)D45 T0547 284 :NE 1qu9A 42 :VP T0547 288 :RNYTL 1qu9A 46 :VAAQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38964 # 1y7tA.284.93 read from T0547.t2k.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)N284 (1y7tA)A93 because P (beta_P) conformation "forbidden" or filtered. T0547 285 :EKSRNYTL 1y7tA 94 :GMERRDLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38965 # 1u19A.284.239 read from T0547.t2k.many.frag # found chain 1u19A in template set Warning: unaligning (T0547)K286 (1u19A)A241 because Y (epsilon') conformation "forbidden" or filtered. T0547 284 :NE 1u19A 239 :ES T0547 287 :SRNYTL 1u19A 242 :TTQKAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38967 1tu1A expands to /projects/compbio/data/pdb/1tu1.pdb.gz 1tu1A:Skipped atom 20, because occupancy 0.500 <= existing 0.500 in 1tu1A Skipped atom 22, because occupancy 0.500 <= existing 0.500 in 1tu1A Skipped atom 24, because occupancy 0.500 <= existing 0.500 in 1tu1A Skipped atom 26, because occupancy 0.500 <= existing 0.500 in 1tu1A Skipped atom 59, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 61, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 63, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 65, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 67, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 69, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 71, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 176, because occupancy 0.480 <= existing 0.520 in 1tu1A Skipped atom 178, because occupancy 0.480 <= existing 0.520 in 1tu1A Skipped atom 180, because occupancy 0.480 <= existing 0.520 in 1tu1A Skipped atom 182, because occupancy 0.480 <= existing 0.520 in 1tu1A Skipped atom 184, because occupancy 0.480 <= existing 0.520 in 1tu1A Skipped atom 213, because occupancy 0.340 <= existing 0.660 in 1tu1A Skipped atom 215, because occupancy 0.340 <= existing 0.660 in 1tu1A Skipped atom 217, because occupancy 0.340 <= existing 0.660 in 1tu1A Skipped atom 219, because occupancy 0.340 <= existing 0.660 in 1tu1A Skipped atom 261, because occupancy 0.480 <= existing 0.520 in 1tu1A Skipped atom 263, because occupancy 0.480 <= existing 0.520 in 1tu1A Skipped atom 265, because occupancy 0.480 <= existing 0.520 in 1tu1A Skipped atom 267, because occupancy 0.480 <= existing 0.520 in 1tu1A Skipped atom 307, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 309, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 311, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 313, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 315, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 317, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 319, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 547, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 549, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 551, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 553, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 555, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 1114, because occupancy 0.440 <= existing 0.560 in 1tu1A Skipped atom 1116, because occupancy 0.440 <= existing 0.560 in 1tu1A Skipped atom 1118, because occupancy 0.440 <= existing 0.560 in 1tu1A Skipped atom 1120, because occupancy 0.440 <= existing 0.560 in 1tu1A Skipped atom 1122, because occupancy 0.440 <= existing 0.560 in 1tu1A Skipped atom 1188, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 1190, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 1192, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 1194, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 1196, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 1198, because occupancy 0.490 <= existing 0.510 in 1tu1A Skipped atom 1200, because occupancy 0.490 <= existing 0.510 in 1tu1A # 1tu1A.284.48 read from T0547.t2k.many.frag # adding 1tu1A to template set # found chain 1tu1A in template set Warning: unaligning (T0547)K286 (1tu1A)A49 because P (beta_P) conformation "forbidden" or filtered. T0547 284 :NE 1tu1A 47 :GD T0547 287 :SRNYTL 1tu1A 50 :PFADYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=38969 # 2bvlA.284.163 read from T0547.t2k.many.frag # found chain 2bvlA in template set Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bvlA)R165 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bvlA)R165 T0547 286 :KSRNYTL 2bvlA 166 :FDYNKFF Number of specific fragments extracted= 1 number of extra gaps= 1 total=38970 # 2aibA.284.38 read from T0547.t2k.many.frag # found chain 2aibA in training set Warning: unaligning (T0547)E285 (2aibA)A40 because E (beta_S) conformation "forbidden" or filtered. T0547 284 :N 2aibA 39 :T T0547 286 :KSRNYTL 2aibA 41 :LPTNAQY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38972 # 2pth.284.152 read from T0547.t2k.many.frag # found chain 2pth in training set T0547 284 :NEKSRNYTL 2pth 153 :PPVSEQKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38973 # 1t56A.284.191 read from T0547.t2k.many.frag # found chain 1t56A in training set Warning: unaligning (T0547)N284 (1t56A)P192 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1t56A)S193 because Y (epsilon') conformation "forbidden" or filtered. T0547 286 :KSRNYTL 1t56A 194 :VPEARVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38974 # 1lyvA.284.262 read from T0547.t2k.many.frag # found chain 1lyvA in training set T0547 284 :NEKSRNYTL 1lyvA 425 :SQLSVEDMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38975 # 1eyhA.284.17 read from T0547.t2k.many.frag # found chain 1eyhA in training set Warning: unaligning (T0547)R288 (1eyhA)S36 because P (beta_P) conformation "forbidden" or filtered. T0547 284 :NEKS 1eyhA 32 :PWGP T0547 289 :NYTL 1eyhA 37 :SSLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=38977 # 1h6kA.284.323 read from T0547.t2k.many.frag # found chain 1h6kA in template set T0547 284 :NEKSRNYTL 1h6kA 343 :NKIPLNYHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38978 2plc expands to /projects/compbio/data/pdb/2plc.pdb.gz 2plc:Warning: there is no chain 2plc will retry with 2plcA # 2plc.284.221 read from T0547.t2k.many.frag # adding 2plc to template set # found chain 2plc in template set Warning: unaligning (T0547)K286 (2plc)F244 because E (beta_S) conformation "forbidden" or filtered. T0547 284 :NE 2plc 242 :LT T0547 287 :SRNYTL 2plc 245 :TPRQYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38980 # 1vlaA.284.46 read from T0547.t2k.many.frag # found chain 1vlaA in training set Warning: unaligning (T0547)N284 (1vlaA)A35 because Y (epsilon') conformation "forbidden" or filtered. T0547 285 :EKSRNYTL 1vlaA 36 :PRPLELVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38981 # 1fcdA.284.299 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1fcdA)P300 Warning: unaligning (T0547)R288 (1fcdA)S304 because Y (epsilon') conformation "forbidden" or filtered. T0547 285 :EKS 1fcdA 301 :MPK T0547 289 :NYTL 1fcdA 305 :GYSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=38983 # 1rq2A.285.175 read from T0547.t2k.many.frag # found chain 1rq2A in template set T0547 285 :EKSRNYTLR 1rq2A 173 :AVSLMDAFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38984 # 1sdiA.285.77 read from T0547.t2k.many.frag # found chain 1sdiA in training set Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE at template residue (1sdiA)R78 Warning: unaligning (T0547)K286 (1sdiA)Q79 because Y (epsilon') conformation "forbidden" or filtered. T0547 287 :SRNYTLR 1sdiA 80 :GLNAELT Number of specific fragments extracted= 1 number of extra gaps= 1 total=38985 # 1qsgA.285.154 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)Y290 (1qsgA)N157 because S (epsilon) conformation "forbidden" or filtered. T0547 285 :EKSRN 1qsgA 152 :AIPNY T0547 291 :TLR 1qsgA 158 :VMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38987 # 1cvrA.285.155 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)R288 (1cvrA)N159 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1cvrA)G160 because L (left) conformation "forbidden" or filtered. T0547 285 :EKS 1cvrA 156 :SAD T0547 290 :YTLR 1cvrA 161 :ESDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=38989 # 1izmA.285.146 read from T0547.t2k.many.frag # found chain 1izmA in template set Warning: unaligning (T0547)E285 (1izmA)E145 because P (beta_P) conformation "forbidden" or filtered. T0547 286 :KSRNYTLR 1izmA 146 :EELAEALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=38990 # 1ydgA.285.178 read from T0547.t2k.many.frag # found chain 1ydgA in template set T0547 285 :EKSRNYTLR 1ydgA 177 :LENDRASIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38991 # 1aisB.285.104 read from T0547.t2k.many.frag # found chain 1aisB in template set T0547 285 :EKSRNYTLR 1aisB 1205 :FVKPTDYVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38992 # 1txoA.285.62 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 285 :EKSRNYTLR 1txoA 66 :GGDLLAKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38993 # 1vlaA.285.47 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 285 :EKSRNYTLR 1vlaA 36 :PRPLELVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38994 # 1aep.285.33 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 285 :EKSRNYTLR 1aep 34 :PDEALNLLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38995 # 1to6A.285.340 read from T0547.t2k.many.frag # found chain 1to6A in template set Warning: unaligning (T0547)K286 (1to6A)E342 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1to6A)P343 because P (beta_P) conformation "forbidden" or filtered. T0547 285 :E 1to6A 341 :S T0547 288 :RNYTLR 1to6A 344 :LEDSLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38997 # 1fcdA.285.300 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)R288 (1fcdA)S304 because Y (epsilon') conformation "forbidden" or filtered. T0547 285 :EKS 1fcdA 301 :MPK T0547 289 :NYTLR 1fcdA 305 :GYSAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=38999 # 1qu9A.285.42 read from T0547.t2k.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE in next template residue (1qu9A)D45 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1qu9A)D45 T0547 285 :E 1qu9A 43 :P T0547 288 :RNYTLR 1qu9A 46 :VAAQAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=39001 # 1n35A.285.810 read from T0547.t2k.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)E285 (1n35A)E811 because P (beta_P) conformation "forbidden" or filtered. T0547 286 :KSRNYTLR 1n35A 812 :EPWPAILD Number of specific fragments extracted= 1 number of extra gaps= 1 total=39002 # 1y7tA.285.94 read from T0547.t2k.many.frag # found chain 1y7tA in training set T0547 285 :EKSRNYTLR 1y7tA 94 :GMERRDLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39003 # 1j3wA.285.52 read from T0547.t2k.many.frag # found chain 1j3wA in training set T0547 285 :EKSRNYTLR 1j3wA 53 :PPPLDTLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39004 # 1zgmA.285.130 read from T0547.t2k.many.frag # found chain 1zgmA in template set Warning: unaligning (T0547)E285 (1zgmA)E119 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1zgmA)M120 because E (beta_S) conformation "forbidden" or filtered. T0547 287 :SRNYTLR 1zgmA 121 :WTPEKWQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=39005 # 2plc.285.222 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 285 :EKSRNYTLR 2plc 243 :TFTPRQYAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39006 # 1u19A.285.240 read from T0547.t2k.many.frag # found chain 1u19A in template set T0547 285 :EKSRNYTLR 1u19A 240 :SATTQKAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39007 # 1wer.285.124 read from T0547.t2k.many.frag # found chain 1wer in training set Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE at template residue (1wer)N838 Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE at template residue (1wer)E839 T0547 287 :SRNYTLR 1wer 840 :DVNTNLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=39008 1uruA expands to /projects/compbio/data/pdb/1uru.pdb.gz 1uruA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1uruA.285.87 read from T0547.t2k.many.frag # adding 1uruA to template set # found chain 1uruA in template set T0547 285 :EKSRNYTLR 1uruA 88 :QWSGYDALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39009 # 1iu4A.285.166 read from T0547.t2k.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1iu4A)R167 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1iu4A)P169 Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1iu4A)P169 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)A173 Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)A173 T0547 288 :RN 1iu4A 170 :FY T0547 292 :LR 1iu4A 174 :LR Number of specific fragments extracted= 2 number of extra gaps= 2 total=39011 # 2pth.285.153 read from T0547.t2k.many.frag # found chain 2pth in training set Warning: unaligning (T0547)E285 (2pth)P154 because P (beta_P) conformation "forbidden" or filtered. T0547 286 :KSRNYTLR 2pth 155 :VSEQKLID Number of specific fragments extracted= 1 number of extra gaps= 1 total=39012 1u5uA expands to /projects/compbio/data/pdb/1u5u.pdb.gz 1u5uA:# 1u5uA.285.34 read from T0547.t2k.many.frag # adding 1u5uA to template set # found chain 1u5uA in template set T0547 285 :EKSRNYTLR 1u5uA 35 :PVFGGLKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39013 # 1bu8A.285.242 read from T0547.t2k.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)E285 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1bu8A)L242 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1bu8A)L242 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)S243 Warning: unaligning (T0547)R288 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (1bu8A)T244 Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bu8A)I245 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)V246 Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE in next template residue (1bu8A)I248 Warning: unaligning (T0547)L292 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)I248 Warning: unaligning (T0547)R293 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)N249 Number of specific fragments extracted= 0 number of extra gaps= 1 total=39013 # 1t56A.285.192 read from T0547.t2k.many.frag # found chain 1t56A in training set Warning: unaligning (T0547)E285 (1t56A)S193 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y290 (1t56A)R198 because G (3-10) conformation "forbidden" or filtered. T0547 286 :KSRN 1t56A 194 :VPEA T0547 291 :TLR 1t56A 199 :VLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=39015 # 2aibA.285.39 read from T0547.t2k.many.frag # found chain 2aibA in training set T0547 285 :EKSRNYTLR 2aibA 40 :ALPTNAQYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39016 # 1eyhA.285.18 read from T0547.t2k.many.frag # found chain 1eyhA in training set Warning: unaligning (T0547)R288 (1eyhA)S36 because P (beta_P) conformation "forbidden" or filtered. T0547 285 :EKS 1eyhA 33 :WGP T0547 289 :NYTLR 1eyhA 37 :SSLMS Number of specific fragments extracted= 2 number of extra gaps= 1 total=39018 # 1gvfA.285.252 read from T0547.t2k.many.frag # found chain 1gvfA in training set T0547 285 :EKSRNYTLR 1gvfA 253 :GNDPRYYMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39019 # 1iv3A.285.65 read from T0547.t2k.many.frag # found chain 1iv3A in training set T0547 285 :EKSRNYTLR 1iv3A 66 :PRWRGERSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39020 # 1qsgA.286.155 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)Y290 (1qsgA)N157 because S (epsilon) conformation "forbidden" or filtered. T0547 286 :KSRN 1qsgA 153 :IPNY T0547 291 :TLRE 1qsgA 158 :VMGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=39022 # 1aisB.286.105 read from T0547.t2k.many.frag # found chain 1aisB in template set T0547 286 :KSRNYTLRE 1aisB 1206 :VKPTDYVNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39023 # 1cvrA.286.156 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)R288 (1cvrA)N159 because L (left) conformation "forbidden" or filtered. T0547 286 :KS 1cvrA 157 :AD T0547 289 :NYTLRE 1cvrA 160 :GESDIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=39025 # 1rq2A.286.176 read from T0547.t2k.many.frag # found chain 1rq2A in template set T0547 286 :KSRNYTLRE 1rq2A 174 :VSLMDAFRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39026 # 1sdiA.286.78 read from T0547.t2k.many.frag # found chain 1sdiA in training set Warning: unaligning (T0547)K286 (1sdiA)Q79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1sdiA)G80 because S (epsilon) conformation "forbidden" or filtered. T0547 288 :RNYTLRE 1sdiA 81 :LNAELTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=39027 # 1n35A.286.811 read from T0547.t2k.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)S287 (1n35A)P813 because P (beta_P) conformation "forbidden" or filtered. T0547 286 :K 1n35A 812 :E T0547 288 :RNYTLRE 1n35A 814 :WPAILDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=39029 # 2plc.286.223 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 286 :KSRNYTLRE 2plc 244 :FTPRQYAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39030 # 1izmA.286.147 read from T0547.t2k.many.frag # found chain 1izmA in template set T0547 286 :KSRNYTLRE 1izmA 146 :EELAEALEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39031 # 1y7tA.286.95 read from T0547.t2k.many.frag # found chain 1y7tA in training set T0547 286 :KSRNYTLRE 1y7tA 95 :MERRDLLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39032 # 1fcdA.286.301 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)R288 (1fcdA)S304 because Y (epsilon') conformation "forbidden" or filtered. T0547 286 :KS 1fcdA 302 :PK T0547 289 :NYTLRE 1fcdA 305 :GYSANS Number of specific fragments extracted= 2 number of extra gaps= 1 total=39034 # 1txoA.286.63 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 286 :KSRNYTLRE 1txoA 67 :GDLLAKLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39035 # 1to6A.286.341 read from T0547.t2k.many.frag # found chain 1to6A in template set Warning: unaligning (T0547)K286 (1to6A)E342 because Y (epsilon') conformation "forbidden" or filtered. T0547 287 :SRNYTLRE 1to6A 343 :PLEDSLKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=39036 # 1zgmA.286.131 read from T0547.t2k.many.frag # found chain 1zgmA in template set T0547 286 :KSRNYTLRE 1zgmA 120 :MWTPEKWQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39037 # 1ydgA.286.179 read from T0547.t2k.many.frag # found chain 1ydgA in template set T0547 286 :KSRNYTLRE 1ydgA 178 :ENDRASIRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=39038 # 1vlaA.286.48 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 286 :KSRNYTLRE 1vlaA 37 :RPLELVLTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39039 # 1wer.286.125 read from T0547.t2k.many.frag # found chain 1wer in training set Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE at template residue (1wer)E839 T0547 287 :SRNYTLRE 1wer 840 :DVNTNLTH Number of specific fragments extracted= 1 number of extra gaps= 1 total=39040 # 1uruA.286.88 read from T0547.t2k.many.frag # found chain 1uruA in template set Warning: unaligning (T0547)K286 (1uruA)W89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1uruA)G91 because T (delta_L) conformation "forbidden" or filtered. T0547 287 :S 1uruA 90 :S T0547 289 :NYTLRE 1uruA 92 :YDALQA Number of specific fragments extracted= 2 number of extra gaps= 2 total=39042 1qmeA expands to /projects/compbio/data/pdb/1qme.pdb.gz 1qmeA:# 1qmeA.286.591 read from T0547.t2k.many.frag # adding 1qmeA to template set # found chain 1qmeA in template set Warning: unaligning (T0547)S287 (1qmeA)V641 because G (3-10) conformation "forbidden" or filtered. T0547 286 :K 1qmeA 640 :S T0547 288 :RNYTLRE 1qmeA 642 :KDISPGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=39044 # 1v33A.286.131 read from T0547.t2k.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)R288 (1v33A)C114 because Y (epsilon') conformation "forbidden" or filtered. T0547 286 :KS 1v33A 112 :TV T0547 289 :NYTLRE 1v33A 115 :PICLND Number of specific fragments extracted= 2 number of extra gaps= 1 total=39046 # 1e58A.286.146 read from T0547.t2k.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)N289 (1e58A)T150 because Y (epsilon') conformation "forbidden" or filtered. T0547 286 :KSR 1e58A 147 :LPL T0547 290 :YTLRE 1e58A 151 :ESLAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=39048 1r3jC expands to /projects/compbio/data/pdb/1r3j.pdb.gz 1r3jC:# 1r3jC.286.81 read from T0547.t2k.many.frag # adding 1r3jC to template set # found chain 1r3jC in template set Warning: unaligning (T0547)R288 (1r3jC)V84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1r3jC)T85 because P (beta_P) conformation "forbidden" or filtered. T0547 286 :KS 1r3jC 82 :YP T0547 290 :YTLRE 1r3jC 86 :LWGRC Number of specific fragments extracted= 2 number of extra gaps= 1 total=39050 # 1xdnA.286.74 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 286 :KSRNYTLRE 1xdnA 122 :FGYHILIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39051 # 1aep.286.127 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 286 :KSRNYTLRE 1aep 128 :APVQSALQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39052 # 1iv3A.286.66 read from T0547.t2k.many.frag # found chain 1iv3A in training set Warning: unaligning (T0547)N289 (1iv3A)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 286 :KSR 1iv3A 67 :RWR T0547 290 :YTLRE 1iv3A 71 :ERSEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=39054 # 2aibA.286.40 read from T0547.t2k.many.frag # found chain 2aibA in training set T0547 286 :KSRNYTLRE 2aibA 41 :LPTNAQYKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39055 1acc expands to /projects/compbio/data/pdb/1acc.pdb.gz 1acc:Warning: there is no chain 1acc will retry with 1accA # 1acc.286.516 read from T0547.t2k.many.frag # adding 1acc to template set # found chain 1acc in template set T0547 286 :KSRNYTLRE 1acc 517 :TKPDMTLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39056 # 1ymtA.286.230 read from T0547.t2k.many.frag # found chain 1ymtA in training set T0547 286 :KSRNYTLRE 1ymtA 447 :MPRNNLLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39057 # 1j3wA.286.53 read from T0547.t2k.many.frag # found chain 1j3wA in training set T0547 286 :KSRNYTLRE 1j3wA 54 :PPLDTLATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39058 # 1bu8A.286.243 read from T0547.t2k.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1bu8A)L242 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)S243 Warning: unaligning (T0547)R288 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (1bu8A)T244 Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bu8A)I245 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)V246 Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE in next template residue (1bu8A)I248 Warning: unaligning (T0547)L292 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)I248 Warning: unaligning (T0547)R293 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)N249 T0547 294 :E 1bu8A 250 :G Number of specific fragments extracted= 1 number of extra gaps= 1 total=39059 # 2pth.286.154 read from T0547.t2k.many.frag # found chain 2pth in training set T0547 286 :KSRNYTLRE 2pth 155 :VSEQKLIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39060 # 1qsgA.287.156 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)Y290 (1qsgA)N157 because S (epsilon) conformation "forbidden" or filtered. T0547 287 :SRN 1qsgA 154 :PNY T0547 291 :TLREY 1qsgA 158 :VMGLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=39062 # 1izmA.287.148 read from T0547.t2k.many.frag # found chain 1izmA in template set T0547 287 :SRNYTLREY 1izmA 147 :ELAEALEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39063 # 1aisB.287.106 read from T0547.t2k.many.frag # found chain 1aisB in template set T0547 287 :SRNYTLREY 1aisB 1207 :KPTDYVNKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=39064 # 2plc.287.224 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 287 :SRNYTLREY 2plc 245 :TPRQYAAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39065 # 1sdiA.287.79 read from T0547.t2k.many.frag # found chain 1sdiA in training set T0547 287 :SRNYTLREY 1sdiA 80 :GLNAELTRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39066 # 1xdnA.287.75 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 287 :SRNYTLREY 1xdnA 123 :GYHILIDEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=39067 # 2c0hA.287.192 read from T0547.t2k.many.frag # found chain 2c0hA in training set Warning: unaligning (T0547)S287 (2c0hA)G207 because Y (epsilon') conformation "forbidden" or filtered. T0547 288 :RNYTLREY 2c0hA 208 :HLYSAQEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=39068 # 1aep.287.128 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 287 :SRNYTLREY 1aep 129 :PVQSALQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39069 # 1txoA.287.64 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 287 :SRNYTLREY 1txoA 68 :DLLAKLDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39070 # 1n35A.287.812 read from T0547.t2k.many.frag # found chain 1n35A in template set T0547 287 :SRNYTLREY 1n35A 813 :PWPAILDQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39071 # 1r3jC.287.82 read from T0547.t2k.many.frag # found chain 1r3jC in template set Warning: unaligning (T0547)R288 (1r3jC)V84 because G (3-10) conformation "forbidden" or filtered. T0547 287 :S 1r3jC 83 :P T0547 289 :NYTLREY 1r3jC 85 :TLWGRCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=39073 # 1y7tA.287.96 read from T0547.t2k.many.frag # found chain 1y7tA in training set T0547 287 :SRNYTLREY 1y7tA 96 :ERRDLLQVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39074 # 1uruA.287.89 read from T0547.t2k.many.frag # found chain 1uruA in template set T0547 287 :SRNYTLREY 1uruA 90 :SGYDALQAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39075 # 1ydgA.287.180 read from T0547.t2k.many.frag # found chain 1ydgA in template set T0547 287 :SRNYTLREY 1ydgA 179 :NDRASIRHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39076 # 1vlaA.287.49 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 287 :SRNYTLREY 1vlaA 38 :PLELVLTGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39077 # 1e58A.287.147 read from T0547.t2k.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)S287 (1e58A)P148 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1e58A)T150 because Y (epsilon') conformation "forbidden" or filtered. T0547 288 :R 1e58A 149 :L T0547 290 :YTLREY 1e58A 151 :ESLALT Number of specific fragments extracted= 2 number of extra gaps= 2 total=39079 # 1v33A.287.132 read from T0547.t2k.many.frag # found chain 1v33A in training set T0547 287 :SRNYTLREY 1v33A 113 :VCPICLNDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39080 1pi1A expands to /projects/compbio/data/pdb/1pi1.pdb.gz 1pi1A:# 1pi1A.287.74 read from T0547.t2k.many.frag # adding 1pi1A to template set # found chain 1pi1A in template set T0547 287 :SRNYTLREY 1pi1A 85 :PIKCSAPKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39081 # 1fcdA.287.302 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)R288 (1fcdA)S304 because Y (epsilon') conformation "forbidden" or filtered. T0547 287 :S 1fcdA 303 :K T0547 289 :NYTLREY 1fcdA 305 :GYSANSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=39083 # 1cvrA.287.157 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)S287 (1cvrA)D158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1cvrA)N159 because L (left) conformation "forbidden" or filtered. T0547 289 :NYTLREY 1cvrA 160 :GESDIQH Number of specific fragments extracted= 1 number of extra gaps= 1 total=39084 # 2d1eA.287.15 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 287 :SRNYTLREY 2d1eA 16 :TLNPMIQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39085 # 1wer.287.126 read from T0547.t2k.many.frag # found chain 1wer in training set T0547 287 :SRNYTLREY 1wer 840 :DVNTNLTHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39086 1k8qA expands to /projects/compbio/data/pdb/1k8q.pdb.gz 1k8qA:# 1k8qA.287.117 read from T0547.t2k.many.frag # adding 1k8qA to template set # found chain 1k8qA in template set T0547 287 :SRNYTLREY 1k8qA 118 :FWAFSFDEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39087 # 1m8jA.287.126 read from T0547.t2k.many.frag # found chain 1m8jA in template set T0547 287 :SRNYTLREY 1m8jA 127 :RDRYSGTEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39088 # 1qmeA.287.592 read from T0547.t2k.many.frag # found chain 1qmeA in template set Warning: unaligning (T0547)N289 (1qmeA)D643 because L (left) conformation "forbidden" or filtered. T0547 287 :SR 1qmeA 641 :VK T0547 290 :YTLREY 1qmeA 644 :ISPGDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=39090 1zx1A expands to /projects/compbio/data/pdb/1zx1.pdb.gz 1zx1A:Skipped atom 200, because occupancy 0.500 <= existing 0.500 in 1zx1A Skipped atom 204, because occupancy 0.500 <= existing 0.500 in 1zx1A Skipped atom 206, because occupancy 0.500 <= existing 0.500 in 1zx1A Skipped atom 208, because occupancy 0.500 <= existing 0.500 in 1zx1A Skipped atom 210, because occupancy 0.500 <= existing 0.500 in 1zx1A # 1zx1A.287.107 read from T0547.t2k.many.frag # adding 1zx1A to template set # found chain 1zx1A in template set Warning: unaligning (T0547)S287 (1zx1A)S107 because Y (epsilon') conformation "forbidden" or filtered. T0547 288 :RNYTLREY 1zx1A 108 :VPAILKGW Number of specific fragments extracted= 1 number of extra gaps= 1 total=39091 # 1to6A.287.342 read from T0547.t2k.many.frag # found chain 1to6A in template set Warning: unaligning (T0547)S287 (1to6A)P343 because P (beta_P) conformation "forbidden" or filtered. T0547 288 :RNYTLREY 1to6A 344 :LEDSLKNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=39092 # 1rq2A.287.177 read from T0547.t2k.many.frag # found chain 1rq2A in template set T0547 287 :SRNYTLREY 1rq2A 175 :SLMDAFRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39093 # 1nu7D.287.206 read from T0547.t2k.many.frag # found chain 1nu7D in template set T0547 287 :SRNYTLREY 1nu7D 206 :SNERIEKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39094 # 1bf5A.287.104 read from T0547.t2k.many.frag # found chain 1bf5A in template set T0547 287 :SRNYTLREY 1bf5A 254 :ACLDQLQNW Number of specific fragments extracted= 1 number of extra gaps= 0 total=39095 # 1xdnA.288.76 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 288 :RNYTLREYA 1xdnA 124 :YHILIDEFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39096 # 2c0hA.288.193 read from T0547.t2k.many.frag # found chain 2c0hA in training set T0547 288 :RNYTLREYA 2c0hA 208 :HLYSAQEIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39097 # 1aisB.288.107 read from T0547.t2k.many.frag # found chain 1aisB in template set T0547 288 :RNYTLREYA 1aisB 1208 :PTDYVNKFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39098 # 2plc.288.225 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 288 :RNYTLREYA 2plc 246 :PRQYAAALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39099 # 1izmA.288.149 read from T0547.t2k.many.frag # found chain 1izmA in template set T0547 288 :RNYTLREYA 1izmA 148 :LAEALEEII Number of specific fragments extracted= 1 number of extra gaps= 0 total=39100 # 1sdiA.288.80 read from T0547.t2k.many.frag # found chain 1sdiA in training set T0547 288 :RNYTLREYA 1sdiA 81 :LNAELTRYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39101 # 1pi1A.288.75 read from T0547.t2k.many.frag # found chain 1pi1A in template set T0547 288 :RNYTLREYA 1pi1A 86 :IKCSAPKYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39102 # 1qsgA.288.157 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 288 :RNYTLREYA 1qsgA 155 :NYNVMGLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39103 # 1aep.288.129 read from T0547.t2k.many.frag # found chain 1aep in template set Warning: unaligning (T0547)R288 (1aep)V130 because G (3-10) conformation "forbidden" or filtered. T0547 289 :NYTLREYA 1aep 131 :QSALQEAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=39104 # 1txoA.288.65 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 288 :RNYTLREYA 1txoA 69 :LLAKLDAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39105 # 1k8qA.288.118 read from T0547.t2k.many.frag # found chain 1k8qA in template set T0547 288 :RNYTLREYA 1k8qA 119 :WAFSFDEMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39106 # 1m8jA.288.127 read from T0547.t2k.many.frag # found chain 1m8jA in template set T0547 288 :RNYTLREYA 1m8jA 128 :DRYSGTEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39107 # 1ycdA.288.81 read from T0547.t2k.many.frag # found chain 1ycdA in training set T0547 288 :RNYTLREYA 1ycdA 82 :HELDISEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39108 # 1lam.288.175 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 288 :RNYTLREYA 1lam 176 :NEMTPTKFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39109 # 1n35A.288.813 read from T0547.t2k.many.frag # found chain 1n35A in template set T0547 288 :RNYTLREYA 1n35A 814 :WPAILDQIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39110 # 1ydgA.288.181 read from T0547.t2k.many.frag # found chain 1ydgA in template set T0547 288 :RNYTLREYA 1ydgA 180 :DRASIRHQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39111 # 1vlaA.288.50 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 288 :RNYTLREYA 1vlaA 39 :LELVLTGLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39112 1hziA expands to /projects/compbio/data/pdb/1hzi.pdb.gz 1hziA:# 1hziA.288.104 read from T0547.t2k.many.frag # adding 1hziA to template set # found chain 1hziA in template set T0547 288 :RNYTLREYA 1hziA 105 :NQSTLENFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39113 # 1v33A.288.133 read from T0547.t2k.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)R288 (1v33A)C114 because Y (epsilon') conformation "forbidden" or filtered. T0547 289 :NYTLREYA 1v33A 115 :PICLNDAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=39114 # 1acc.288.518 read from T0547.t2k.many.frag # found chain 1acc in template set T0547 288 :RNYTLREYA 1acc 519 :PDMTLKEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39115 # 1zpdA.288.362 read from T0547.t2k.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)R288 (1zpdA)A363 because P (beta_P) conformation "forbidden" or filtered. T0547 289 :NYTLREYA 1zpdA 364 :PLVNAEIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=39116 # 1y7tA.288.97 read from T0547.t2k.many.frag # found chain 1y7tA in training set T0547 288 :RNYTLREYA 1y7tA 97 :RRDLLQVNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39117 # 1e58A.288.148 read from T0547.t2k.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)N289 (1e58A)T150 because Y (epsilon') conformation "forbidden" or filtered. T0547 288 :R 1e58A 149 :L T0547 290 :YTLREYA 1e58A 151 :ESLALTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=39119 # 1nu7D.288.207 read from T0547.t2k.many.frag # found chain 1nu7D in template set T0547 288 :RNYTLREYA 1nu7D 207 :NERIEKEMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39120 # 1r3jC.288.83 read from T0547.t2k.many.frag # found chain 1r3jC in template set T0547 288 :RNYTLREYA 1r3jC 84 :VTLWGRCVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39121 # 1cvrA.288.158 read from T0547.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)R288 (1cvrA)N159 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1cvrA)G160 because L (left) conformation "forbidden" or filtered. T0547 290 :YTLREYA 1cvrA 161 :ESDIQHE Number of specific fragments extracted= 1 number of extra gaps= 1 total=39122 # 1vjvA.288.121 read from T0547.t2k.many.frag # found chain 1vjvA in training set T0547 288 :RNYTLREYA 1vjvA 206 :KQQDAEELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=39123 # 1woqA.288.46 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N289 (1woqA)P48 because C (cis) conformation "forbidden" or filtered. T0547 288 :R 1woqA 47 :Q T0547 290 :YTLREYA 1woqA 49 :ATPESVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=39125 1vjxA expands to /projects/compbio/data/pdb/1vjx.pdb.gz 1vjxA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 209, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 211, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 213, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 215, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 219, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 221, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 223, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 225, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 227, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 229, because occupancy 0.500 <= existing 0.500 in 1vjxA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vjxA.288.96 read from T0547.t2k.many.frag # adding 1vjxA to template set # found chain 1vjxA in template set T0547 288 :RNYTLREYA 1vjxA 85 :KDLTLKEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39126 # 1fcdA.288.303 read from T0547.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)R288 (1fcdA)S304 because Y (epsilon') conformation "forbidden" or filtered. T0547 289 :NYTLREYA 1fcdA 305 :GYSANSQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=39127 # 1xdnA.289.77 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 289 :NYTLREYAN 1xdnA 125 :HILIDEFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39128 # 1izmA.289.150 read from T0547.t2k.many.frag # found chain 1izmA in template set T0547 289 :NYTLREYAN 1izmA 149 :AEALEEIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39129 # 2c0hA.289.194 read from T0547.t2k.many.frag # found chain 2c0hA in training set T0547 289 :NYTLREYAN 2c0hA 209 :LYSAQEIGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39130 # 2plc.289.226 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 289 :NYTLREYAN 2plc 247 :RQYAAALNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39131 # 1ycdA.289.82 read from T0547.t2k.many.frag # found chain 1ycdA in training set T0547 289 :NYTLREYAN 1ycdA 83 :ELDISEGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39132 # 1sdiA.289.81 read from T0547.t2k.many.frag # found chain 1sdiA in training set T0547 289 :NYTLREYAN 1sdiA 82 :NAELTRYTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39133 # 1txoA.289.66 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 289 :NYTLREYAN 1txoA 70 :LAKLDAAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39134 # 1aep.289.130 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 289 :NYTLREYAN 1aep 131 :QSALQEAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39135 # 1hziA.289.105 read from T0547.t2k.many.frag # found chain 1hziA in template set T0547 289 :NYTLREYAN 1hziA 106 :QSTLENFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39136 # 1pi1A.289.76 read from T0547.t2k.many.frag # found chain 1pi1A in template set T0547 289 :NYTLREYAN 1pi1A 87 :KCSAPKYID Number of specific fragments extracted= 1 number of extra gaps= 0 total=39137 # 1aisB.289.108 read from T0547.t2k.many.frag # found chain 1aisB in template set T0547 289 :NYTLREYAN 1aisB 1209 :TDYVNKFAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=39138 # 1qsgA.289.158 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)Y290 (1qsgA)N157 because S (epsilon) conformation "forbidden" or filtered. T0547 289 :N 1qsgA 156 :Y T0547 291 :TLREYAN 1qsgA 158 :VMGLAKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=39140 # 1m8jA.289.128 read from T0547.t2k.many.frag # found chain 1m8jA in template set T0547 289 :NYTLREYAN 1m8jA 129 :RYSGTEVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39141 # 1t1uA.289.591 read from T0547.t2k.many.frag # found chain 1t1uA in template set T0547 289 :NYTLREYAN 1t1uA 593 :ETSSVEFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39142 # 1vlaA.289.51 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 289 :NYTLREYAN 1vlaA 40 :ELVLTGLMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39143 # 1v33A.289.134 read from T0547.t2k.many.frag # found chain 1v33A in training set T0547 289 :NYTLREYAN 1v33A 115 :PICLNDAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39144 # 1vjvA.289.122 read from T0547.t2k.many.frag # found chain 1vjvA in training set T0547 289 :NYTLREYAN 1vjvA 207 :QQDAEELFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39145 # 1lam.289.176 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 289 :NYTLREYAN 1lam 177 :EMTPTKFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39146 # 1ydgA.289.182 read from T0547.t2k.many.frag # found chain 1ydgA in template set T0547 289 :NYTLREYAN 1ydgA 181 :RASIRHQVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39147 # 1g66A.289.57 read from T0547.t2k.many.frag # found chain 1g66A in training set T0547 289 :NYTLREYAN 1g66A 58 :SSSVAQGIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39148 # 1k8qA.289.119 read from T0547.t2k.many.frag # found chain 1k8qA in template set T0547 289 :NYTLREYAN 1k8qA 120 :AFSFDEMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39149 1ryp2 expands to /projects/compbio/data/pdb/1ryp.pdb.gz 1ryp2:# 1ryp2.289.85 read from T0547.t2k.many.frag # adding 1ryp2 to template set # found chain 1ryp2 in template set T0547 289 :NYTLREYAN 1ryp2 78 :ALEPSYIFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39150 # 1woqA.289.47 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N289 (1woqA)P48 because C (cis) conformation "forbidden" or filtered. T0547 290 :YTLREYAN 1woqA 49 :ATPESVAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=39151 # 1xrsA.289.205 read from T0547.t2k.many.frag # found chain 1xrsA in template set T0547 289 :NYTLREYAN 1xrsA 206 :TYATQENFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39152 # 1jqnA.289.653 read from T0547.t2k.many.frag # found chain 1jqnA in template set T0547 289 :NYTLREYAN 1jqnA 654 :RRIMDELSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39153 # 1nu7D.289.208 read from T0547.t2k.many.frag # found chain 1nu7D in template set T0547 289 :NYTLREYAN 1nu7D 208 :ERIEKEMIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39154 # 1zc6A.289.228 read from T0547.t2k.many.frag # found chain 1zc6A in template set T0547 289 :NYTLREYAN 1zc6A 229 :DALLRQAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39155 1s7zA expands to /projects/compbio/data/pdb/1s7z.pdb.gz 1s7zA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1s7zA.289.4 read from T0547.t2k.many.frag # adding 1s7zA to template set # found chain 1s7zA in template set Warning: unaligning (T0547)Y290 because first residue in template chain is (1s7zA)M5 T0547 291 :TLREYAN 1s7zA 6 :TYNNVFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=39156 # 1r3jC.289.84 read from T0547.t2k.many.frag # found chain 1r3jC in template set Warning: unaligning (T0547)N289 (1r3jC)T85 because P (beta_P) conformation "forbidden" or filtered. T0547 290 :YTLREYAN 1r3jC 86 :LWGRCVAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=39157 # 1vflA.289.121 read from T0547.t2k.many.frag # found chain 1vflA in training set T0547 289 :NYTLREYAN 1vflA 120 :DLTPDEVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39158 # 1xdnA.290.78 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 290 :YTLREYAND 1xdnA 126 :ILIDEFTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39159 # 1izmA.290.151 read from T0547.t2k.many.frag # found chain 1izmA in template set T0547 290 :YTLREYAND 1izmA 150 :EALEEIIEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39160 # 2plc.290.227 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 290 :YTLREYAND 2plc 248 :QYAAALNNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39161 # 1sdiA.290.82 read from T0547.t2k.many.frag # found chain 1sdiA in training set T0547 290 :YTLREYAND 1sdiA 83 :AELTRYTLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39162 # 1txoA.290.67 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 290 :YTLREYAND 1txoA 71 :AKLDAAVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39163 # 2c0hA.290.195 read from T0547.t2k.many.frag # found chain 2c0hA in training set T0547 290 :YTLREYAND 2c0hA 210 :YSAQEIGRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=39164 # 1aep.290.131 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 290 :YTLREYAND 1aep 132 :SALQEAAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39165 # 1hziA.290.106 read from T0547.t2k.many.frag # found chain 1hziA in template set T0547 290 :YTLREYAND 1hziA 107 :STLENFLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=39166 # 1t1uA.290.592 read from T0547.t2k.many.frag # found chain 1t1uA in template set T0547 290 :YTLREYAND 1t1uA 594 :TSSVEFAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39167 # 1aisB.290.109 read from T0547.t2k.many.frag # found chain 1aisB in template set T0547 290 :YTLREYAND 1aisB 1210 :DYVNKFADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39168 # 1lam.290.177 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 290 :YTLREYAND 1lam 178 :MTPTKFAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39169 # 1ycdA.290.83 read from T0547.t2k.many.frag # found chain 1ycdA in training set T0547 290 :YTLREYAND 1ycdA 84 :LDISEGLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39170 # 1pi1A.290.77 read from T0547.t2k.many.frag # found chain 1pi1A in template set T0547 290 :YTLREYAND 1pi1A 88 :CSAPKYIDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39171 # 1qsgA.290.159 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)Y290 (1qsgA)N157 because S (epsilon) conformation "forbidden" or filtered. T0547 291 :TLREYAND 1qsgA 158 :VMGLAKAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=39172 # 1vlaA.290.52 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 290 :YTLREYAND 1vlaA 41 :LVLTGLMGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=39173 # 1v33A.290.135 read from T0547.t2k.many.frag # found chain 1v33A in training set T0547 290 :YTLREYAND 1v33A 116 :ICLNDAKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39174 # 1nu7D.290.209 read from T0547.t2k.many.frag # found chain 1nu7D in template set T0547 290 :YTLREYAND 1nu7D 209 :RIEKEMIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=39175 # 1p4cA.290.319 read from T0547.t2k.many.frag # found chain 1p4cA in training set T0547 290 :YTLREYAND 1p4cA 320 :TGVDEVLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39176 # 1g66A.290.58 read from T0547.t2k.many.frag # found chain 1g66A in training set T0547 290 :YTLREYAND 1g66A 59 :SSVAQGIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39177 # 1ryp2.290.86 read from T0547.t2k.many.frag # found chain 1ryp2 in template set T0547 290 :YTLREYAND 1ryp2 79 :LEPSYIFEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39178 # 1m8jA.290.129 read from T0547.t2k.many.frag # found chain 1m8jA in template set T0547 290 :YTLREYAND 1m8jA 130 :YSGTEVARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39179 # 1ydgA.290.183 read from T0547.t2k.many.frag # found chain 1ydgA in template set T0547 290 :YTLREYAND 1ydgA 182 :ASIRHQVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39180 # 1jqnA.290.654 read from T0547.t2k.many.frag # found chain 1jqnA in template set T0547 290 :YTLREYAND 1jqnA 655 :RIMDELSVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39181 # 1vjvA.290.123 read from T0547.t2k.many.frag # found chain 1vjvA in training set T0547 290 :YTLREYAND 1vjvA 208 :QDAEELFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39182 # 1s7zA.290.5 read from T0547.t2k.many.frag # found chain 1s7zA in template set Warning: unaligning (T0547)Y290 because first residue in template chain is (1s7zA)M5 T0547 291 :TLREYAND 1s7zA 6 :TYNNVFDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=39183 1eyqA expands to /projects/compbio/data/pdb/1eyq.pdb.gz 1eyqA:# 1eyqA.290.100 read from T0547.t2k.many.frag # adding 1eyqA to template set # found chain 1eyqA in template set T0547 290 :YTLREYAND 1eyqA 101 :LSGPEYSRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39184 # 1n35A.290.815 read from T0547.t2k.many.frag # found chain 1n35A in template set T0547 290 :YTLREYAND 1n35A 816 :AILDQIMGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39185 # 1zc6A.290.229 read from T0547.t2k.many.frag # found chain 1zc6A in template set T0547 290 :YTLREYAND 1zc6A 230 :ALLRQAGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=39186 # 1woqA.290.48 read from T0547.t2k.many.frag # found chain 1woqA in training set T0547 290 :YTLREYAND 1woqA 49 :ATPESVAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39187 # 1fiuA.290.63 read from T0547.t2k.many.frag # found chain 1fiuA in training set T0547 290 :YTLREYAND 1fiuA 64 :TSGNAFEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39188 # 1xdnA.291.79 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 291 :TLREYANDV 1xdnA 127 :LIDEFTAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39189 # 1sdiA.291.83 read from T0547.t2k.many.frag # found chain 1sdiA in training set T0547 291 :TLREYANDV 1sdiA 84 :ELTRYTLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39190 # 1izmA.291.152 read from T0547.t2k.many.frag # found chain 1izmA in template set T0547 291 :TLREYANDV 1izmA 151 :ALEEIIEYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39191 # 1hziA.291.107 read from T0547.t2k.many.frag # found chain 1hziA in template set T0547 291 :TLREYANDV 1hziA 108 :TLENFLERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39192 # 1txoA.291.68 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 291 :TLREYANDV 1txoA 72 :KLDAAVRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39193 # 1t1uA.291.593 read from T0547.t2k.many.frag # found chain 1t1uA in template set T0547 291 :TLREYANDV 1t1uA 595 :SSVEFAEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39194 # 1aep.291.132 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 291 :TLREYANDV 1aep 133 :ALQEAAEKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39195 # 2c0hA.291.196 read from T0547.t2k.many.frag # found chain 2c0hA in training set T0547 291 :TLREYANDV 2c0hA 211 :SAQEIGRFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39196 # 2plc.291.228 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 291 :TLREYANDV 2plc 249 :YAAALNNKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39197 # 1pi1A.291.78 read from T0547.t2k.many.frag # found chain 1pi1A in template set T0547 291 :TLREYANDV 1pi1A 89 :SAPKYIDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39198 # 1vlaA.291.53 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 291 :TLREYANDV 1vlaA 42 :VLTGLMGCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39199 # 1lam.291.178 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 291 :TLREYANDV 1lam 179 :TPTKFAEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39200 # 1qsgA.291.160 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 291 :TLREYANDV 1qsgA 158 :VMGLAKASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39201 # 1p4cA.291.320 read from T0547.t2k.many.frag # found chain 1p4cA in training set T0547 291 :TLREYANDV 1p4cA 321 :GVDEVLTLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39202 # 1ydgA.291.184 read from T0547.t2k.many.frag # found chain 1ydgA in template set T0547 291 :TLREYANDV 1ydgA 183 :SIRHQVRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39203 # 1ryp2.291.87 read from T0547.t2k.many.frag # found chain 1ryp2 in template set T0547 291 :TLREYANDV 1ryp2 80 :EPSYIFEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39204 # 7a3hA.291.149 read from T0547.t2k.many.frag # found chain 7a3hA in training set T0547 291 :TLREYANDV 7a3hA 150 :QIKPYAEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39205 # 1s7zA.291.6 read from T0547.t2k.many.frag # found chain 1s7zA in template set T0547 291 :TLREYANDV 1s7zA 6 :TYNNVFDHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39206 # 1v33A.291.136 read from T0547.t2k.many.frag # found chain 1v33A in training set T0547 291 :TLREYANDV 1v33A 117 :CLNDAKEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39207 # 1of8A.291.348 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 291 :TLREYANDV 1of8A 349 :TTEDVLRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39208 # 1g66A.291.59 read from T0547.t2k.many.frag # found chain 1g66A in training set T0547 291 :TLREYANDV 1g66A 60 :SVAQGIAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39209 # 1pu6A.291.88 read from T0547.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0547)T291 (1pu6A)F89 because L (left) conformation "forbidden" or filtered. T0547 292 :LREYANDV 1pu6A 90 :YNQKAKRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=39210 # 1vjvA.291.124 read from T0547.t2k.many.frag # found chain 1vjvA in training set T0547 291 :TLREYANDV 1vjvA 209 :DAEELFTQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39211 # 1nu7D.291.210 read from T0547.t2k.many.frag # found chain 1nu7D in template set T0547 291 :TLREYANDV 1nu7D 210 :IEKEMIKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39212 # 1l1lA.291.516 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 291 :TLREYANDV 1l1lA 517 :MVDQLYKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39213 # 1ycdA.291.84 read from T0547.t2k.many.frag # found chain 1ycdA in training set T0547 291 :TLREYANDV 1ycdA 85 :DISEGLKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39214 # 1xrsA.291.207 read from T0547.t2k.many.frag # found chain 1xrsA in template set T0547 291 :TLREYANDV 1xrsA 208 :ATQENFRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39215 # 1ukkA.291.49 read from T0547.t2k.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)N297 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ukkA)F58 Warning: unaligning (T0547)V299 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ukkA)F58 T0547 291 :TLREYA 1ukkA 50 :IAAAHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39216 # 1r3jC.291.86 read from T0547.t2k.many.frag # found chain 1r3jC in template set T0547 291 :TLREYANDV 1r3jC 87 :WGRCVAVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39217 # 1m8jA.291.130 read from T0547.t2k.many.frag # found chain 1m8jA in template set T0547 291 :TLREYANDV 1m8jA 131 :SGTEVARRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39218 # 1xdnA.292.80 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 292 :LREYANDVV 1xdnA 128 :IDEFTAQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39219 # 1sdiA.292.84 read from T0547.t2k.many.frag # found chain 1sdiA in training set T0547 292 :LREYANDVV 1sdiA 85 :LTRYTLSLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39220 # 1t1uA.292.594 read from T0547.t2k.many.frag # found chain 1t1uA in template set T0547 292 :LREYANDVV 1t1uA 596 :SVEFAEAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39221 # 1txoA.292.69 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 292 :LREYANDVV 1txoA 73 :LDAAVRAGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39222 # 1izmA.292.153 read from T0547.t2k.many.frag # found chain 1izmA in template set T0547 292 :LREYANDVV 1izmA 152 :LEEIIEYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39223 # 1hziA.292.108 read from T0547.t2k.many.frag # found chain 1hziA in template set T0547 292 :LREYANDVV 1hziA 109 :LENFLERLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39224 # 2plc.292.229 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 292 :LREYANDVV 2plc 250 :AAALNNKVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39225 # 2c0hA.292.197 read from T0547.t2k.many.frag # found chain 2c0hA in training set T0547 292 :LREYANDVV 2c0hA 212 :AQEIGRFVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39226 # 1pi1A.292.79 read from T0547.t2k.many.frag # found chain 1pi1A in template set T0547 292 :LREYANDVV 1pi1A 90 :APKYIDYLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39227 # 1p4cA.292.321 read from T0547.t2k.many.frag # found chain 1p4cA in training set T0547 292 :LREYANDVV 1p4cA 322 :VDEVLTLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39228 # 1vlaA.292.54 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 292 :LREYANDVV 1vlaA 43 :LTGLMGCTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39229 # 1i60A.292.113 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 292 :LREYANDVV 1i60A 114 :KEEIKKSSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39230 # 1aep.292.133 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 292 :LREYANDVV 1aep 134 :LQEAAEKTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39231 # 1ryp2.292.88 read from T0547.t2k.many.frag # found chain 1ryp2 in template set T0547 292 :LREYANDVV 1ryp2 81 :PSYIFEYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39232 # 1pu6A.292.89 read from T0547.t2k.many.frag # found chain 1pu6A in training set T0547 292 :LREYANDVV 1pu6A 90 :YNQKAKRLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39233 # 1lam.292.179 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 292 :LREYANDVV 1lam 180 :PTKFAEIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39234 # 1of8A.292.349 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 292 :LREYANDVV 1of8A 350 :TEDVLRKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39235 # 1qsgA.292.161 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 292 :LREYANDVV 1qsgA 159 :MGLAKASLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39236 # 1s7zA.292.7 read from T0547.t2k.many.frag # found chain 1s7zA in template set T0547 292 :LREYANDVV 1s7zA 7 :YNNVFDHAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39237 # 1g66A.292.60 read from T0547.t2k.many.frag # found chain 1g66A in training set T0547 292 :LREYANDVV 1g66A 61 :VAQGIAAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39238 # 1v33A.292.137 read from T0547.t2k.many.frag # found chain 1v33A in training set T0547 292 :LREYANDVV 1v33A 118 :LNDAKEIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39239 2anuA expands to /projects/compbio/data/pdb/2anu.pdb.gz 2anuA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2anuA.292.81 read from T0547.t2k.many.frag # adding 2anuA to template set # found chain 2anuA in template set T0547 292 :LREYANDVV 2anuA 70 :FQDYLKRLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=39240 # 1j24A.292.117 read from T0547.t2k.many.frag # found chain 1j24A in training set T0547 292 :LREYANDVV 1j24A 118 :PEETAQYIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=39241 # 1l1lA.292.517 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 292 :LREYANDVV 1l1lA 518 :VDQLYKAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39242 # 1ukkA.292.50 read from T0547.t2k.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)N297 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ukkA)F58 Warning: unaligning (T0547)V299 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ukkA)F58 T0547 292 :LREYA 1ukkA 51 :AAAHA T0547 300 :V 1ukkA 59 :S Number of specific fragments extracted= 2 number of extra gaps= 0 total=39244 # 7a3hA.292.150 read from T0547.t2k.many.frag # found chain 7a3hA in training set T0547 292 :LREYANDVV 7a3hA 151 :IKPYAEEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39245 1fjgT expands to /projects/compbio/data/pdb/1fjg.pdb.gz 1fjgT:# 1fjgT.292.76 read from T0547.t2k.many.frag # adding 1fjgT to template set # found chain 1fjgT in template set T0547 292 :LREYANDVV 1fjgT 77 :AARRKSRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39246 # 1nu7D.292.211 read from T0547.t2k.many.frag # found chain 1nu7D in template set T0547 292 :LREYANDVV 1nu7D 211 :EKEMIKDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39247 # 1t2dA.292.213 read from T0547.t2k.many.frag # found chain 1t2dA in training set T0547 292 :LREYANDVV 1t2dA 213 :LEAIFDRTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39248 # 1d0cA.292.167 read from T0547.t2k.many.frag # found chain 1d0cA in training set T0547 292 :LREYANDVV 1d0cA 206 :AQEMFTYIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=39249 # 1t1uA.293.595 read from T0547.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)F301 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t1uA)S606 T0547 293 :REYANDVV 1t1uA 597 :VEFAEAVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=39250 # 1txoA.293.70 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 293 :REYANDVVF 1txoA 74 :DAAVRAGNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39251 # 1izmA.293.154 read from T0547.t2k.many.frag # found chain 1izmA in template set T0547 293 :REYANDVVF 1izmA 153 :EEIIEYVRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39252 # 1xdnA.293.81 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 293 :REYANDVVF 1xdnA 129 :DEFTAQIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39253 # 1sdiA.293.85 read from T0547.t2k.many.frag # found chain 1sdiA in training set T0547 293 :REYANDVVF 1sdiA 86 :TRYTLSLMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39254 # 1i60A.293.114 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 293 :REYANDVVF 1i60A 115 :EEIKKSSVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=39255 # 1vlaA.293.55 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 293 :REYANDVVF 1vlaA 44 :TGLMGCTGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39256 # 1hziA.293.109 read from T0547.t2k.many.frag # found chain 1hziA in template set T0547 293 :REYANDVVF 1hziA 110 :ENFLERLKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39257 # 1p4cA.293.322 read from T0547.t2k.many.frag # found chain 1p4cA in training set T0547 293 :REYANDVVF 1p4cA 323 :DEVLTLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39258 # 1pi1A.293.80 read from T0547.t2k.many.frag # found chain 1pi1A in template set T0547 293 :REYANDVVF 1pi1A 91 :PKYIDYLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39259 # 2plc.293.230 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 293 :REYANDVVF 2plc 251 :AALNNKVEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39260 # 1pu6A.293.90 read from T0547.t2k.many.frag # found chain 1pu6A in training set T0547 293 :REYANDVVF 1pu6A 91 :NQKAKRLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=39261 # 1aep.293.134 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 293 :REYANDVVF 1aep 135 :QEAAEKTKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39262 # 1qsgA.293.162 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 293 :REYANDVVF 1qsgA 160 :GLAKASLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39263 # 1ryp2.293.89 read from T0547.t2k.many.frag # found chain 1ryp2 in template set T0547 293 :REYANDVVF 1ryp2 82 :SYIFEYLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39264 # 1j24A.293.118 read from T0547.t2k.many.frag # found chain 1j24A in training set T0547 293 :REYANDVVF 1j24A 119 :EETAQYIFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39265 # 2c0hA.293.198 read from T0547.t2k.many.frag # found chain 2c0hA in training set T0547 293 :REYANDVVF 2c0hA 213 :QEIGRFVNW Number of specific fragments extracted= 1 number of extra gaps= 0 total=39266 # 1g66A.293.61 read from T0547.t2k.many.frag # found chain 1g66A in training set T0547 293 :REYANDVVF 1g66A 62 :AQGIAAVAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39267 # 1lam.293.180 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 293 :REYANDVVF 1lam 181 :TKFAEIVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39268 # 1fjgT.293.77 read from T0547.t2k.many.frag # found chain 1fjgT in template set T0547 293 :REYANDVVF 1fjgT 78 :ARRKSRLMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39269 # 1s7zA.293.8 read from T0547.t2k.many.frag # found chain 1s7zA in template set T0547 293 :REYANDVVF 1s7zA 8 :NNVFDHAYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39270 # 1v33A.293.138 read from T0547.t2k.many.frag # found chain 1v33A in training set T0547 293 :REYANDVVF 1v33A 119 :NDAKEIVRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=39271 # 1l1lA.293.518 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 293 :REYANDVVF 1l1lA 519 :DQLYKAVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39272 # 1u5uA.293.42 read from T0547.t2k.many.frag # found chain 1u5uA in template set T0547 293 :REYANDVVF 1u5uA 43 :KLKKEKFKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39273 # 1of8A.293.350 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 293 :REYANDVVF 1of8A 351 :EDVLRKLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39274 # 1vj7A.293.214 read from T0547.t2k.many.frag # found chain 1vj7A in template set T0547 293 :REYANDVVF 1vj7A 215 :EALVDDIVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39275 1iruK expands to /projects/compbio/data/pdb/1iru.pdb.gz 1iruK:# 1iruK.293.77 read from T0547.t2k.many.frag # adding 1iruK to template set # found chain 1iruK in template set T0547 293 :REYANDVVF 1iruK 78 :TAAANFTRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39276 # 1cg5B.293.56 read from T0547.t2k.many.frag # found chain 1cg5B in training set T0547 293 :REYANDVVF 1cg5B 57 :QQHADKVQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39277 # 1ydgA.293.186 read from T0547.t2k.many.frag # found chain 1ydgA in template set T0547 293 :REYANDVVF 1ydgA 185 :RHQVRRQVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39278 # 1qw9A.293.264 read from T0547.t2k.many.frag # found chain 1qw9A in training set T0547 293 :REYANDVVF 1qw9A 265 :DDFIRSVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39279 # 1xdnA.294.82 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 294 :EYANDVVFI 1xdnA 130 :EFTAQIRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39280 # 1txoA.294.71 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 294 :EYANDVVFI 1txoA 75 :AAVRAGNSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39281 # 1t1uA.294.596 read from T0547.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)F301 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t1uA)S606 Warning: unaligning (T0547)I302 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t1uA)S606 T0547 294 :EYANDVV 1t1uA 598 :EFAEAVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=39282 # 1izmA.294.155 read from T0547.t2k.many.frag # found chain 1izmA in template set T0547 294 :EYANDVVFI 1izmA 154 :EIIEYVRTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39283 # 1i60A.294.115 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 294 :EYANDVVFI 1i60A 116 :EIKKSSVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39284 # 1sdiA.294.86 read from T0547.t2k.many.frag # found chain 1sdiA in training set T0547 294 :EYANDVVFI 1sdiA 87 :RYTLSLMVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39285 # 1pu6A.294.91 read from T0547.t2k.many.frag # found chain 1pu6A in training set T0547 294 :EYANDVVFI 1pu6A 92 :QKAKRLIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39286 # 1vlaA.294.56 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 294 :EYANDVVFI 1vlaA 45 :GLMGCTGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=39287 # 1hziA.294.110 read from T0547.t2k.many.frag # found chain 1hziA in template set T0547 294 :EYANDVVFI 1hziA 111 :NFLERLKTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39288 # 1qsgA.294.163 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 294 :EYANDVVFI 1qsgA 161 :LAKASLEAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39289 # 1j24A.294.119 read from T0547.t2k.many.frag # found chain 1j24A in training set T0547 294 :EYANDVVFI 1j24A 120 :ETAQYIFLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39290 # 1p4cA.294.323 read from T0547.t2k.many.frag # found chain 1p4cA in training set T0547 294 :EYANDVVFI 1p4cA 324 :EVLTLLKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=39291 # 2c0hA.294.199 read from T0547.t2k.many.frag # found chain 2c0hA in training set T0547 294 :EYANDVVFI 2c0hA 214 :EIGRFVNWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39292 # 1ryp2.294.90 read from T0547.t2k.many.frag # found chain 1ryp2 in template set T0547 294 :EYANDVVFI 1ryp2 83 :YIFEYLATV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39293 # 2plc.294.231 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 294 :EYANDVVFI 2plc 252 :ALNNKVEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=39294 # 1v33A.294.139 read from T0547.t2k.many.frag # found chain 1v33A in training set T0547 294 :EYANDVVFI 1v33A 120 :DAKEIVRDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39295 # 1pi1A.294.81 read from T0547.t2k.many.frag # found chain 1pi1A in template set T0547 294 :EYANDVVFI 1pi1A 92 :KYIDYLMTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=39296 # 1fjgT.294.78 read from T0547.t2k.many.frag # found chain 1fjgT in template set T0547 294 :EYANDVVFI 1fjgT 79 :RRKSRLMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39297 # 1y7tA.294.103 read from T0547.t2k.many.frag # found chain 1y7tA in training set T0547 294 :EYANDVVFI 1y7tA 103 :VNGKIFTEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39298 # 1u5uA.294.43 read from T0547.t2k.many.frag # found chain 1u5uA in template set T0547 294 :EYANDVVFI 1u5uA 44 :LKKEKFKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39299 # 1g66A.294.62 read from T0547.t2k.many.frag # found chain 1g66A in training set T0547 294 :EYANDVVFI 1g66A 63 :QGIAAVASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39300 # 1aep.294.135 read from T0547.t2k.many.frag # found chain 1aep in template set T0547 294 :EYANDVVFI 1aep 136 :EAAEKTKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39301 # 1of8A.294.351 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 294 :EYANDVVFI 1of8A 352 :DVLRKLAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39302 # 1lam.294.181 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 294 :EYANDVVFI 1lam 182 :KFAEIVEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39303 # 1ukkA.294.52 read from T0547.t2k.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)N297 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ukkA)F58 Warning: unaligning (T0547)V299 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ukkA)F58 T0547 294 :EYA 1ukkA 53 :AHA T0547 300 :VFI 1ukkA 59 :SMA Number of specific fragments extracted= 2 number of extra gaps= 0 total=39305 1up8A expands to /projects/compbio/data/pdb/1up8.pdb.gz 1up8A:# 1up8A.294.441 read from T0547.t2k.many.frag # adding 1up8A to template set # found chain 1up8A in template set T0547 294 :EYANDVVFI 1up8A 441 :DILEKAEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39306 # 1vj7A.294.215 read from T0547.t2k.many.frag # found chain 1vj7A in template set T0547 294 :EYANDVVFI 1vj7A 216 :ALVDDIVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39307 # 1ufaA.294.326 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 294 :EYANDVVFI 1ufaA 327 :EHARHFVGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39308 # 2anuA.294.83 read from T0547.t2k.many.frag # found chain 2anuA in template set T0547 294 :EYANDVVFI 2anuA 72 :DYLKRLWRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39309 # 1s7zA.294.9 read from T0547.t2k.many.frag # found chain 1s7zA in template set T0547 294 :EYANDVVFI 1s7zA 9 :NVFDHAYEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39310 # 1xdnA.295.83 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 295 :YANDVVFIL 1xdnA 131 :FTAQIRILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39311 # 1t1uA.295.597 read from T0547.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)F301 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t1uA)S606 Warning: unaligning (T0547)I302 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t1uA)S606 T0547 295 :YANDVV 1t1uA 599 :FAEAVG T0547 303 :L 1t1uA 607 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=39313 # 1i60A.295.116 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 295 :YANDVVFIL 1i60A 117 :IKKSSVDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39314 # 1txoA.295.72 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 295 :YANDVVFIL 1txoA 76 :AVRAGNSAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39315 # 1izmA.295.156 read from T0547.t2k.many.frag # found chain 1izmA in template set T0547 295 :YANDVVFIL 1izmA 155 :IIEYVRTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39316 # 1sdiA.295.87 read from T0547.t2k.many.frag # found chain 1sdiA in training set T0547 295 :YANDVVFIL 1sdiA 88 :YTLSLMVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39317 # 1pu6A.295.92 read from T0547.t2k.many.frag # found chain 1pu6A in training set T0547 295 :YANDVVFIL 1pu6A 93 :KAKRLIDLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39318 # 1qsgA.295.164 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 295 :YANDVVFIL 1qsgA 162 :AKASLEANV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39319 # 1vlaA.295.57 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 295 :YANDVVFIL 1vlaA 46 :LMGCTGMDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39320 # 1j24A.295.120 read from T0547.t2k.many.frag # found chain 1j24A in training set T0547 295 :YANDVVFIL 1j24A 121 :TAQYIFLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39321 # 1p4cA.295.324 read from T0547.t2k.many.frag # found chain 1p4cA in training set T0547 295 :YANDVVFIL 1p4cA 325 :VLTLLKADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39322 # 1fjgT.295.79 read from T0547.t2k.many.frag # found chain 1fjgT in template set T0547 295 :YANDVVFIL 1fjgT 80 :RKSRLMRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39323 # 1l1lA.295.520 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 295 :YANDVVFIL 1l1lA 521 :LYKAVVKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=39324 # 1hziA.295.111 read from T0547.t2k.many.frag # found chain 1hziA in template set T0547 295 :YANDVVFIL 1hziA 112 :FLERLKTIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39325 # 2c0hA.295.200 read from T0547.t2k.many.frag # found chain 2c0hA in training set T0547 295 :YANDVVFIL 2c0hA 215 :IGRFVNWQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39326 # 1g66A.295.63 read from T0547.t2k.many.frag # found chain 1g66A in training set T0547 295 :YANDVVFIL 1g66A 64 :GIAAVASAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39327 # 1v33A.295.140 read from T0547.t2k.many.frag # found chain 1v33A in training set T0547 295 :YANDVVFIL 1v33A 121 :AKEIVRDTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39328 # 2plc.295.232 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 295 :YANDVVFIL 2plc 253 :LNNKVEQFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39329 # 1ryp2.295.91 read from T0547.t2k.many.frag # found chain 1ryp2 in template set T0547 295 :YANDVVFIL 1ryp2 84 :IFEYLATVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39330 # 1vj7A.295.216 read from T0547.t2k.many.frag # found chain 1vj7A in template set T0547 295 :YANDVVFIL 1vj7A 217 :LVDDIVTKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39331 # 1pi1A.295.82 read from T0547.t2k.many.frag # found chain 1pi1A in template set T0547 295 :YANDVVFIL 1pi1A 93 :YIDYLMTWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39332 # 1ufaA.295.327 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 295 :YANDVVFIL 1ufaA 328 :HARHFVGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39333 # 1ydgA.295.188 read from T0547.t2k.many.frag # found chain 1ydgA in template set T0547 295 :YANDVVFIL 1ydgA 187 :QVRRQVELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39334 # 1up8A.295.442 read from T0547.t2k.many.frag # found chain 1up8A in template set T0547 295 :YANDVVFIL 1up8A 442 :ILEKAEISN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39335 # 1y7tA.295.104 read from T0547.t2k.many.frag # found chain 1y7tA in training set T0547 295 :YANDVVFIL 1y7tA 104 :NGKIFTEQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39336 # 1ukkA.295.53 read from T0547.t2k.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)N297 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ukkA)F58 Warning: unaligning (T0547)V299 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ukkA)F58 T0547 295 :YA 1ukkA 54 :HA T0547 300 :VFIL 1ukkA 59 :SMAL Number of specific fragments extracted= 2 number of extra gaps= 0 total=39338 # 1xrsA.295.211 read from T0547.t2k.many.frag # found chain 1xrsA in template set T0547 295 :YANDVVFIL 1xrsA 212 :NFRLMREAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39339 # 1lam.295.182 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 295 :YANDVVFIL 1lam 183 :FAEIVEENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39340 # 1ygtA.295.39 read from T0547.t2k.many.frag # found chain 1ygtA in training set T0547 295 :YANDVVFIL 1ygtA 40 :WTGQVVENC Number of specific fragments extracted= 1 number of extra gaps= 0 total=39341 # 1qtwA.295.121 read from T0547.t2k.many.frag # found chain 1qtwA in training set T0547 295 :YANDVVFIL 1qtwA 122 :CLARIAESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39342 # 1i60A.296.117 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 296 :ANDVVFILK 1i60A 118 :KKSSVDVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39343 # 1t1uA.296.598 read from T0547.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)F301 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t1uA)S606 Warning: unaligning (T0547)I302 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t1uA)S606 T0547 296 :ANDVV 1t1uA 600 :AEAVG T0547 303 :LK 1t1uA 607 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=39345 # 1txoA.296.73 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 296 :ANDVVFILK 1txoA 77 :VRAGNSAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39346 # 1pu6A.296.93 read from T0547.t2k.many.frag # found chain 1pu6A in training set T0547 296 :ANDVVFILK 1pu6A 94 :AKRLIDLSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39347 # 1qsgA.296.165 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 296 :ANDVVFILK 1qsgA 163 :KASLEANVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39348 # 1sdiA.296.88 read from T0547.t2k.many.frag # found chain 1sdiA in training set T0547 296 :ANDVVFILK 1sdiA 89 :TLSLMVLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=39349 # 1xdnA.296.84 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 296 :ANDVVFILK 1xdnA 132 :TAQIRILND Number of specific fragments extracted= 1 number of extra gaps= 0 total=39350 # 1p4cA.296.325 read from T0547.t2k.many.frag # found chain 1p4cA in training set T0547 296 :ANDVVFILK 1p4cA 326 :LTLLKADID Number of specific fragments extracted= 1 number of extra gaps= 0 total=39351 # 1j24A.296.121 read from T0547.t2k.many.frag # found chain 1j24A in training set T0547 296 :ANDVVFILK 1j24A 122 :AQYIFLIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39352 # 1izmA.296.157 read from T0547.t2k.many.frag # found chain 1izmA in template set T0547 296 :ANDVVFILK 1izmA 156 :IEYVRTIAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39353 # 1vlaA.296.58 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 296 :ANDVVFILK 1vlaA 47 :MGCTGMDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39354 # 2plc.296.233 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 296 :ANDVVFILK 2plc 254 :NNKVEQFVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39355 # 1fjgT.296.80 read from T0547.t2k.many.frag # found chain 1fjgT in template set T0547 296 :ANDVVFILK 1fjgT 81 :KSRLMRKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39356 # 1hziA.296.112 read from T0547.t2k.many.frag # found chain 1hziA in template set T0547 296 :ANDVVFILK 1hziA 113 :LERLKTIMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39357 # 1g66A.296.64 read from T0547.t2k.many.frag # found chain 1g66A in training set T0547 296 :ANDVVFILK 1g66A 65 :IAAVASAVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39358 # 1qtwA.296.122 read from T0547.t2k.many.frag # found chain 1qtwA in training set T0547 296 :ANDVVFILK 1qtwA 123 :LARIAESIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39359 # 1ryp2.296.92 read from T0547.t2k.many.frag # found chain 1ryp2 in template set T0547 296 :ANDVVFILK 1ryp2 85 :FEYLATVMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39360 # 1ydgA.296.189 read from T0547.t2k.many.frag # found chain 1ydgA in template set T0547 296 :ANDVVFILK 1ydgA 188 :VRRQVELTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39361 # 1ufaA.296.328 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 296 :ANDVVFILK 1ufaA 329 :ARHFVGLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39362 # 2c0hA.296.201 read from T0547.t2k.many.frag # found chain 2c0hA in training set T0547 296 :ANDVVFILK 2c0hA 216 :GRFVNWQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39363 # 1l1lA.296.521 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 296 :ANDVVFILK 1l1lA 522 :YKAVVKADQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39364 # 1d0cA.296.171 read from T0547.t2k.many.frag # found chain 1d0cA in training set T0547 296 :ANDVVFILK 1d0cA 210 :FTYICNHIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39365 # 1lam.296.183 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 296 :ANDVVFILK 1lam 184 :AEIVEENLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39366 # 1vj7A.296.217 read from T0547.t2k.many.frag # found chain 1vj7A in template set T0547 296 :ANDVVFILK 1vj7A 218 :VDDIVTKIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39367 # 1cxqA.296.112 read from T0547.t2k.many.frag # found chain 1cxqA in training set T0547 296 :ANDVVFILK 1cxqA 160 :NRLLKDKIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39368 # 1up8A.296.443 read from T0547.t2k.many.frag # found chain 1up8A in template set T0547 296 :ANDVVFILK 1up8A 443 :LEKAEISNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39369 # 1of8A.296.353 read from T0547.t2k.many.frag # found chain 1of8A in training set T0547 296 :ANDVVFILK 1of8A 354 :LRKLAAAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39370 # 1v33A.296.141 read from T0547.t2k.many.frag # found chain 1v33A in training set T0547 296 :ANDVVFILK 1v33A 122 :KEIVRDTVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39371 # 1y7tA.296.105 read from T0547.t2k.many.frag # found chain 1y7tA in training set T0547 296 :ANDVVFILK 1y7tA 105 :GKIFTEQGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39372 # 1ukkA.296.54 read from T0547.t2k.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)N297 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ukkA)F58 Warning: unaligning (T0547)V299 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ukkA)F58 T0547 296 :A 1ukkA 55 :A T0547 300 :VFILK 1ukkA 59 :SMALA Number of specific fragments extracted= 2 number of extra gaps= 0 total=39374 # 1i60A.297.118 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 297 :NDVVFILKN 1i60A 119 :KSSVDVLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39375 # 1qsgA.297.166 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 297 :NDVVFILKN 1qsgA 164 :ASLEANVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39376 # 1txoA.297.74 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 297 :NDVVFILKN 1txoA 78 :RAGNSAIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39377 # 1t1uA.297.599 read from T0547.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)F301 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t1uA)S606 Warning: unaligning (T0547)I302 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t1uA)S606 Warning: unaligning (T0547)N305 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)M610 T0547 297 :NDVV 1t1uA 601 :EAVG T0547 303 :LK 1t1uA 607 :LV Number of specific fragments extracted= 2 number of extra gaps= 2 total=39379 # 1vlaA.297.59 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 297 :NDVVFILKN 1vlaA 48 :GCTGMDVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39380 # 1pu6A.297.94 read from T0547.t2k.many.frag # found chain 1pu6A in training set T0547 297 :NDVVFILKN 1pu6A 95 :KRLIDLSGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39381 # 1xdnA.297.85 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 297 :NDVVFILKN 1xdnA 133 :AQIRILNDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39382 # 1izmA.297.158 read from T0547.t2k.many.frag # found chain 1izmA in template set T0547 297 :NDVVFILKN 1izmA 157 :EYVRTIAML Number of specific fragments extracted= 1 number of extra gaps= 0 total=39383 # 1sdiA.297.89 read from T0547.t2k.many.frag # found chain 1sdiA in training set T0547 297 :NDVVFILKN 1sdiA 90 :LSLMVLERK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39384 # 1j24A.297.122 read from T0547.t2k.many.frag # found chain 1j24A in training set T0547 297 :NDVVFILKN 1j24A 123 :QYIFLIAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39385 # 1p4cA.297.326 read from T0547.t2k.many.frag # found chain 1p4cA in training set T0547 297 :NDVVFILKN 1p4cA 327 :TLLKADIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39386 # 1hziA.297.113 read from T0547.t2k.many.frag # found chain 1hziA in template set T0547 297 :NDVVFILKN 1hziA 114 :ERLKTIMRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39387 # 1ufaA.297.329 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 297 :NDVVFILKN 1ufaA 330 :RHFVGLLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=39388 # 1l1lA.297.522 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 297 :NDVVFILKN 1l1lA 523 :KAVVKADQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=39389 # 2plc.297.234 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 297 :NDVVFILKN 2plc 255 :NKVEQFVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39390 # 1ukkA.297.55 read from T0547.t2k.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)N297 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ukkA)F58 Warning: unaligning (T0547)V299 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ukkA)F58 T0547 300 :VFILKN 1ukkA 59 :SMALAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39391 # 1fjgT.297.81 read from T0547.t2k.many.frag # found chain 1fjgT in template set T0547 297 :NDVVFILKN 1fjgT 82 :SRLMRKVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39392 # 1fiuA.297.70 read from T0547.t2k.many.frag # found chain 1fiuA in training set T0547 297 :NDVVFILKN 1fiuA 71 :AICSEFVQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39393 # 2c0hA.297.202 read from T0547.t2k.many.frag # found chain 2c0hA in training set T0547 297 :NDVVFILKN 2c0hA 217 :RFVNWQAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39394 # 1up8A.297.444 read from T0547.t2k.many.frag # found chain 1up8A in template set T0547 297 :NDVVFILKN 1up8A 444 :EKAEISNRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39395 # 1g66A.297.65 read from T0547.t2k.many.frag # found chain 1g66A in training set T0547 297 :NDVVFILKN 1g66A 66 :AAVASAVNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39396 # 1ydgA.297.190 read from T0547.t2k.many.frag # found chain 1ydgA in template set T0547 297 :NDVVFILKN 1ydgA 189 :RRQVELTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39397 # 1v33A.297.142 read from T0547.t2k.many.frag # found chain 1v33A in training set T0547 297 :NDVVFILKN 1v33A 123 :EIVRDTVII Number of specific fragments extracted= 1 number of extra gaps= 0 total=39398 1w61A expands to /projects/compbio/data/pdb/1w61.pdb.gz 1w61A:# 1w61A.297.241 read from T0547.t2k.many.frag # adding 1w61A to template set # found chain 1w61A in template set T0547 297 :NDVVFILKN 1w61A 242 :EAGELLRTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39399 # 1to6A.297.352 read from T0547.t2k.many.frag # found chain 1to6A in template set T0547 297 :NDVVFILKN 1to6A 353 :LYLEHTASN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39400 # 1u14A.297.53 read from T0547.t2k.many.frag # found chain 1u14A in training set T0547 297 :NDVVFILKN 1u14A 53 :AGARNRVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39401 # 1qtwA.297.123 read from T0547.t2k.many.frag # found chain 1qtwA in training set T0547 297 :NDVVFILKN 1qtwA 124 :ARIAESINI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39402 # 1qw9A.297.268 read from T0547.t2k.many.frag # found chain 1qw9A in training set T0547 297 :NDVVFILKN 1qw9A 269 :RSVVAIADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39403 # 1v4sA.297.113 read from T0547.t2k.many.frag # found chain 1v4sA in template set T0547 297 :NDVVFILKN 1v4sA 124 :DYISECISD Number of specific fragments extracted= 1 number of extra gaps= 0 total=39404 # 1s7zA.297.12 read from T0547.t2k.many.frag # found chain 1s7zA in template set T0547 297 :NDVVFILKN 1s7zA 12 :DHAYEMLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39405 # 1i60A.298.119 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 298 :DVVFILKNI 1i60A 120 :SSVDVLTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39406 # 1qsgA.298.167 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 298 :DVVFILKNI 1qsgA 165 :SLEANVRYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39407 # 1txoA.298.75 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 298 :DVVFILKNI 1txoA 79 :AGNSAIAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39408 # 1vlaA.298.60 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 298 :DVVFILKNI 1vlaA 49 :CTGMDVVSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39409 # 1t1uA.298.600 read from T0547.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)F301 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t1uA)S606 Warning: unaligning (T0547)I302 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t1uA)S606 Warning: unaligning (T0547)N305 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)M610 Warning: unaligning (T0547)I306 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)M610 T0547 298 :DVV 1t1uA 602 :AVG T0547 303 :LK 1t1uA 607 :LV Number of specific fragments extracted= 2 number of extra gaps= 2 total=39411 # 1fiuA.298.71 read from T0547.t2k.many.frag # found chain 1fiuA in training set T0547 298 :DVVFILKNI 1fiuA 72 :ICSEFVQSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39412 # 1fjgT.298.82 read from T0547.t2k.many.frag # found chain 1fjgT in template set T0547 298 :DVVFILKNI 1fjgT 83 :RLMRKVRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39413 # 1p4cA.298.327 read from T0547.t2k.many.frag # found chain 1p4cA in training set T0547 298 :DVVFILKNI 1p4cA 328 :LLKADIDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39414 # 1pu6A.298.95 read from T0547.t2k.many.frag # found chain 1pu6A in training set T0547 298 :DVVFILKNI 1pu6A 96 :RLIDLSGNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39415 # 1cxqA.298.114 read from T0547.t2k.many.frag # found chain 1cxqA in training set T0547 298 :DVVFILKNI 1cxqA 162 :LLKDKIRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39416 # 2plc.298.235 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 298 :DVVFILKNI 2plc 256 :KVEQFVLNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39417 # 1hziA.298.114 read from T0547.t2k.many.frag # found chain 1hziA in template set T0547 298 :DVVFILKNI 1hziA 115 :RLKTIMREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39418 # 1l1lA.298.523 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 298 :DVVFILKNI 1l1lA 524 :AVVKADQDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39419 # 1ufaA.298.330 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 298 :DVVFILKNI 1ufaA 331 :HFVGLLERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39420 # 1g66A.298.66 read from T0547.t2k.many.frag # found chain 1g66A in training set T0547 298 :DVVFILKNI 1g66A 67 :AVASAVNSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=39421 # 1j24A.298.123 read from T0547.t2k.many.frag # found chain 1j24A in training set T0547 298 :DVVFILKNI 1j24A 124 :YIFLIAKRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39422 # 1u14A.298.54 read from T0547.t2k.many.frag # found chain 1u14A in training set T0547 298 :DVVFILKNI 1u14A 54 :GARNRVDNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39423 # 1ukkA.298.56 read from T0547.t2k.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)V299 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ukkA)F58 T0547 300 :VFILKNI 1ukkA 59 :SMALAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39424 # 1to6A.298.353 read from T0547.t2k.many.frag # found chain 1to6A in template set T0547 298 :DVVFILKNI 1to6A 354 :YLEHTASNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39425 # 1v4sA.298.114 read from T0547.t2k.many.frag # found chain 1v4sA in template set T0547 298 :DVVFILKNI 1v4sA 125 :YISECISDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=39426 # 1izmA.298.159 read from T0547.t2k.many.frag # found chain 1izmA in template set T0547 298 :DVVFILKNI 1izmA 158 :YVRTIAMLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=39427 1vajA expands to /projects/compbio/data/pdb/1vaj.pdb.gz 1vajA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vajA.298.15 read from T0547.t2k.many.frag # adding 1vajA to template set # found chain 1vajA in template set T0547 298 :DVVFILKNI 1vajA 16 :LARRAIEEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39428 # 1up8A.298.445 read from T0547.t2k.many.frag # found chain 1up8A in template set T0547 298 :DVVFILKNI 1up8A 445 :KAEISNRKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39429 1vqvA expands to /projects/compbio/data/pdb/1vqv.pdb.gz 1vqvA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 389, because occupancy 0.300 <= existing 0.700 in 1vqvA Skipped atom 391, because occupancy 0.300 <= existing 0.700 in 1vqvA Skipped atom 393, because occupancy 0.300 <= existing 0.700 in 1vqvA Skipped atom 395, because occupancy 0.300 <= existing 0.700 in 1vqvA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vqvA.298.98 read from T0547.t2k.many.frag # adding 1vqvA to template set # found chain 1vqvA in template set T0547 298 :DVVFILKNI 1vqvA 99 :RFYIGVKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39430 # 1ydgA.298.191 read from T0547.t2k.many.frag # found chain 1ydgA in template set T0547 298 :DVVFILKNI 1ydgA 190 :RQVELTAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39431 # 1xdnA.298.86 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 298 :DVVFILKNI 1xdnA 134 :QIRILNDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39432 # 2f5gA.298.34 read from T0547.t2k.many.frag # found chain 2f5gA in training set T0547 298 :DVVFILKNI 2f5gA 35 :YTKEVLKSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39433 # 1sdiA.298.90 read from T0547.t2k.many.frag # found chain 1sdiA in training set T0547 298 :DVVFILKNI 1sdiA 91 :SLMVLERKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39434 # 1tca.298.81 read from T0547.t2k.many.frag # found chain 1tca in training set T0547 298 :DVVFILKNI 1tca 82 :YMVNAITAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39435 # 1j0dA.298.236 read from T0547.t2k.many.frag # found chain 1j0dA in template set T0547 298 :DVVFILKNI 1j0dA 237 :QTLRIANNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39436 # 1qsgA.299.168 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 299 :VVFILKNIA 1qsgA 166 :LEANVRYMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39437 # 1i60A.299.120 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 299 :VVFILKNIA 1i60A 121 :SVDVLTELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39438 # 1txoA.299.76 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 299 :VVFILKNIA 1txoA 80 :GNSAIAAQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39439 # 1vlaA.299.61 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 299 :VVFILKNIA 1vlaA 50 :TGMDVVSIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39440 # 1fiuA.299.72 read from T0547.t2k.many.frag # found chain 1fiuA in training set T0547 299 :VVFILKNIA 1fiuA 73 :CSEFVQSAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=39441 # 1t1uA.299.601 read from T0547.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)F301 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t1uA)S606 Warning: unaligning (T0547)I302 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t1uA)S606 Warning: unaligning (T0547)N305 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)M610 Warning: unaligning (T0547)I306 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)M610 T0547 299 :VV 1t1uA 603 :VG T0547 303 :LK 1t1uA 607 :LV T0547 307 :A 1t1uA 611 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=39444 # 1j24A.299.124 read from T0547.t2k.many.frag # found chain 1j24A in training set T0547 299 :VVFILKNIA 1j24A 125 :IFLIAKREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39445 # 1ukkA.299.57 read from T0547.t2k.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)V299 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ukkA)F58 T0547 300 :VFILKNIA 1ukkA 59 :SMALAASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39446 # 1fjgT.299.83 read from T0547.t2k.many.frag # found chain 1fjgT in template set T0547 299 :VVFILKNIA 1fjgT 84 :LMRKVRQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39447 # 1hziA.299.115 read from T0547.t2k.many.frag # found chain 1hziA in template set T0547 299 :VVFILKNIA 1hziA 116 :LKTIMREKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39448 # 1l1lA.299.524 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 299 :VVFILKNIA 1l1lA 525 :VVKADQDYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39449 # 1p4cA.299.328 read from T0547.t2k.many.frag # found chain 1p4cA in training set T0547 299 :VVFILKNIA 1p4cA 329 :LKADIDRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39450 # 1up8A.299.446 read from T0547.t2k.many.frag # found chain 1up8A in template set T0547 299 :VVFILKNIA 1up8A 446 :AEISNRKQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39451 # 1pu6A.299.96 read from T0547.t2k.many.frag # found chain 1pu6A in training set T0547 299 :VVFILKNIA 1pu6A 97 :LIDLSGNIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39452 # 1ufaA.299.331 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 299 :VVFILKNIA 1ufaA 332 :FVGLLERLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39453 # 1to6A.299.354 read from T0547.t2k.many.frag # found chain 1to6A in template set T0547 299 :VVFILKNIA 1to6A 355 :LEHTASNIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39454 # 1xdnA.299.87 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 299 :VVFILKNIA 1xdnA 135 :IRILNDLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39455 # 2plc.299.236 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 299 :VVFILKNIA 2plc 257 :VEQFVLNLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39456 # 1vqvA.299.99 read from T0547.t2k.many.frag # found chain 1vqvA in template set T0547 299 :VVFILKNIA 1vqvA 100 :FYIGVKRAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=39457 # 1cxqA.299.115 read from T0547.t2k.many.frag # found chain 1cxqA in training set T0547 299 :VVFILKNIA 1cxqA 163 :LKDKIRVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39458 # 1w61A.299.243 read from T0547.t2k.many.frag # found chain 1w61A in template set T0547 299 :VVFILKNIA 1w61A 244 :GELLRTEIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39459 # 1u14A.299.55 read from T0547.t2k.many.frag # found chain 1u14A in training set T0547 299 :VVFILKNIA 1u14A 55 :ARNRVDNAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39460 # 1tca.299.82 read from T0547.t2k.many.frag # found chain 1tca in training set T0547 299 :VVFILKNIA 1tca 83 :MVNAITALY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39461 # 2f5gA.299.35 read from T0547.t2k.many.frag # found chain 2f5gA in training set T0547 299 :VVFILKNIA 2f5gA 36 :TKEVLKSIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39462 # 1j0dA.299.237 read from T0547.t2k.many.frag # found chain 1j0dA in template set T0547 299 :VVFILKNIA 1j0dA 238 :TLRIANNTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39463 # 1ufyA.299.22 read from T0547.t2k.many.frag # found chain 1ufyA in training set T0547 299 :VVFILKNIA 1ufyA 23 :TRELLLKML Number of specific fragments extracted= 1 number of extra gaps= 0 total=39464 # 1vajA.299.16 read from T0547.t2k.many.frag # found chain 1vajA in template set T0547 299 :VVFILKNIA 1vajA 17 :ARRAIEEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39465 # 1gbs.299.119 read from T0547.t2k.many.frag # found chain 1gbs in training set T0547 299 :VVFILKNIA 1gbs 120 :LTDFIKRIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39466 # 1g66A.299.67 read from T0547.t2k.many.frag # found chain 1g66A in training set T0547 299 :VVFILKNIA 1g66A 68 :VASAVNSFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39467 # 1v33A.299.144 read from T0547.t2k.many.frag # found chain 1v33A in training set T0547 299 :VVFILKNIA 1v33A 125 :VRDTVIILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39468 # 1qsgA.300.169 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 300 :VFILKNIAE 1qsgA 167 :EANVRYMAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39469 # 1i60A.300.121 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 300 :VFILKNIAE 1i60A 122 :VDVLTELSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=39470 # 1txoA.300.77 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 300 :VFILKNIAE 1txoA 81 :NSAIAAQVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39471 # 1vlaA.300.62 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 300 :VFILKNIAE 1vlaA 51 :GMDVVSILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39472 # 1fjgT.300.84 read from T0547.t2k.many.frag # found chain 1fjgT in template set T0547 300 :VFILKNIAE 1fjgT 85 :MRKVRQLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39473 # 1vqvA.300.100 read from T0547.t2k.many.frag # found chain 1vqvA in template set T0547 300 :VFILKNIAE 1vqvA 101 :YIGVKRACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39474 # 1ukkA.300.58 read from T0547.t2k.many.frag # found chain 1ukkA in training set T0547 300 :VFILKNIAE 1ukkA 59 :SMALAASLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39475 # 1v4sA.300.116 read from T0547.t2k.many.frag # found chain 1v4sA in template set T0547 300 :VFILKNIAE 1v4sA 127 :SECISDFLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=39476 # 1cxqA.300.116 read from T0547.t2k.many.frag # found chain 1cxqA in training set T0547 300 :VFILKNIAE 1cxqA 164 :KDKIRVLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39477 # 1p4cA.300.329 read from T0547.t2k.many.frag # found chain 1p4cA in training set T0547 300 :VFILKNIAE 1p4cA 330 :KADIDRTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39478 # 2plc.300.237 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 300 :VFILKNIAE 2plc 258 :EQFVLNLTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39479 # 1fiuA.300.73 read from T0547.t2k.many.frag # found chain 1fiuA in training set T0547 300 :VFILKNIAE 1fiuA 74 :SEFVQSAFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39480 # 1up8A.300.447 read from T0547.t2k.many.frag # found chain 1up8A in template set T0547 300 :VFILKNIAE 1up8A 447 :EISNRKQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39481 # 1j24A.300.125 read from T0547.t2k.many.frag # found chain 1j24A in training set T0547 300 :VFILKNIAE 1j24A 126 :FLIAKREQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39482 # 2f5gA.300.36 read from T0547.t2k.many.frag # found chain 2f5gA in training set T0547 300 :VFILKNIAE 2f5gA 37 :KEVLKSIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39483 # 1hziA.300.116 read from T0547.t2k.many.frag # found chain 1hziA in template set T0547 300 :VFILKNIAE 1hziA 117 :KTIMREKYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39484 # 1t1uA.300.602 read from T0547.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)F301 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t1uA)S606 Warning: unaligning (T0547)I302 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t1uA)S606 Warning: unaligning (T0547)N305 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)M610 Warning: unaligning (T0547)I306 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)M610 Warning: unaligning (T0547)E308 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)L613 T0547 300 :V 1t1uA 604 :G T0547 303 :LK 1t1uA 607 :LV T0547 307 :A 1t1uA 611 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=39487 # 1vajA.300.17 read from T0547.t2k.many.frag # found chain 1vajA in template set T0547 300 :VFILKNIAE 1vajA 18 :RRAIEEYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39488 # 1ufaA.300.332 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 300 :VFILKNIAE 1ufaA 333 :VGLLERLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39489 # 1to6A.300.355 read from T0547.t2k.many.frag # found chain 1to6A in template set T0547 300 :VFILKNIAE 1to6A 356 :EHTASNIGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=39490 # 1l1lA.300.525 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 300 :VFILKNIAE 1l1lA 526 :VKADQDYSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39491 # 1kqpA.300.139 read from T0547.t2k.many.frag # found chain 1kqpA in training set T0547 300 :VFILKNIAE 1kqpA 140 :MIAQYAIGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39492 # 1u14A.300.56 read from T0547.t2k.many.frag # found chain 1u14A in training set T0547 300 :VFILKNIAE 1u14A 56 :RNRVDNARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39493 # 1ufyA.300.23 read from T0547.t2k.many.frag # found chain 1ufyA in training set T0547 300 :VFILKNIAE 1ufyA 24 :RELLLKMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39494 # 1tca.300.83 read from T0547.t2k.many.frag # found chain 1tca in training set T0547 300 :VFILKNIAE 1tca 84 :VNAITALYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39495 # 1s7zA.300.15 read from T0547.t2k.many.frag # found chain 1s7zA in template set T0547 300 :VFILKNIAE 1s7zA 15 :YEMLKENIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39496 # 1j0dA.300.238 read from T0547.t2k.many.frag # found chain 1j0dA in template set T0547 300 :VFILKNIAE 1j0dA 239 :LRIANNTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39497 # 1s4bP.300.298 read from T0547.t2k.many.frag # found chain 1s4bP in template set T0547 300 :VFILKNIAE 1s4bP 314 :LELKRAECE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39498 # 1pu6A.300.97 read from T0547.t2k.many.frag # found chain 1pu6A in training set T0547 300 :VFILKNIAE 1pu6A 98 :IDLSGNILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39499 # 1g66A.300.68 read from T0547.t2k.many.frag # found chain 1g66A in training set T0547 300 :VFILKNIAE 1g66A 69 :ASAVNSFNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39500 # 1qsgA.301.170 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 301 :FILKNIAEQ 1qsgA 168 :ANVRYMANA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39501 # 1i60A.301.122 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 301 :FILKNIAEQ 1i60A 123 :DVLTELSDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39502 # 1fjgT.301.85 read from T0547.t2k.many.frag # found chain 1fjgT in template set T0547 301 :FILKNIAEQ 1fjgT 86 :RKVRQLLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39503 # 1vlaA.301.63 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 301 :FILKNIAEQ 1vlaA 52 :MDVVSILRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39504 # 1vqvA.301.101 read from T0547.t2k.many.frag # found chain 1vqvA in template set T0547 301 :FILKNIAEQ 1vqvA 102 :IGVKRACEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=39505 # 1cxqA.301.117 read from T0547.t2k.many.frag # found chain 1cxqA in training set T0547 301 :FILKNIAEQ 1cxqA 165 :DKIRVLAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39506 # 1s4bP.301.299 read from T0547.t2k.many.frag # found chain 1s4bP in template set T0547 301 :FILKNIAEQ 1s4bP 315 :ELKRAECER Number of specific fragments extracted= 1 number of extra gaps= 0 total=39507 # 1ukkA.301.59 read from T0547.t2k.many.frag # found chain 1ukkA in training set T0547 301 :FILKNIAEQ 1ukkA 60 :MALAASLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=39508 # 1txoA.301.78 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 301 :FILKNIAEQ 1txoA 82 :SAIAAQVEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39509 # 1v4sA.301.117 read from T0547.t2k.many.frag # found chain 1v4sA in template set T0547 301 :FILKNIAEQ 1v4sA 128 :ECISDFLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39510 # 1u14A.301.57 read from T0547.t2k.many.frag # found chain 1u14A in training set T0547 301 :FILKNIAEQ 1u14A 57 :NRVDNARRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39511 # 2f5gA.301.37 read from T0547.t2k.many.frag # found chain 2f5gA in training set T0547 301 :FILKNIAEQ 2f5gA 38 :EVLKSIAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39512 # 1l1lA.301.526 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 301 :FILKNIAEQ 1l1lA 527 :KADQDYSKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39513 # 1fiuA.301.74 read from T0547.t2k.many.frag # found chain 1fiuA in training set T0547 301 :FILKNIAEQ 1fiuA 75 :EFVQSAFEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39514 # 1p4cA.301.330 read from T0547.t2k.many.frag # found chain 1p4cA in training set T0547 301 :FILKNIAEQ 1p4cA 331 :ADIDRTLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39515 # 1up8A.301.448 read from T0547.t2k.many.frag # found chain 1up8A in template set T0547 301 :FILKNIAEQ 1up8A 448 :ISNRKQNIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39516 # 1tca.301.84 read from T0547.t2k.many.frag # found chain 1tca in training set T0547 301 :FILKNIAEQ 1tca 85 :NAITALYAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39517 # 1xdnA.301.89 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 301 :FILKNIAEQ 1xdnA 137 :ILNDLLKQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39518 # 1k8qA.301.132 read from T0547.t2k.many.frag # found chain 1k8qA in template set T0547 301 :FILKNIAEQ 1k8qA 133 :ATIDFILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39519 # 1ufyA.301.24 read from T0547.t2k.many.frag # found chain 1ufyA in training set T0547 301 :FILKNIAEQ 1ufyA 25 :ELLLKMLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39520 # 1ufaA.301.333 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 301 :FILKNIAEQ 1ufaA 334 :GLLERLAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39521 # 1t1uA.301.603 read from T0547.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)F301 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t1uA)S606 Warning: unaligning (T0547)I302 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t1uA)S606 Warning: unaligning (T0547)N305 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)M610 Warning: unaligning (T0547)I306 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)M610 Warning: unaligning (T0547)E308 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)L613 Warning: unaligning (T0547)Q309 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)L613 T0547 303 :LK 1t1uA 607 :LV T0547 307 :A 1t1uA 611 :R Number of specific fragments extracted= 2 number of extra gaps= 3 total=39523 1tg6A expands to /projects/compbio/data/pdb/1tg6.pdb.gz 1tg6A:# 1tg6A.301.100 read from T0547.t2k.many.frag # adding 1tg6A to template set # found chain 1tg6A in template set T0547 301 :FILKNIAEQ 1tg6A 45 :AQLLFLQSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39524 # 1to6A.301.356 read from T0547.t2k.many.frag # found chain 1to6A in template set T0547 301 :FILKNIAEQ 1to6A 357 :HTASNIGHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39525 # 1hziA.301.117 read from T0547.t2k.many.frag # found chain 1hziA in template set T0547 301 :FILKNIAEQ 1hziA 118 :TIMREKYSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39526 # 1j24A.301.126 read from T0547.t2k.many.frag # found chain 1j24A in training set T0547 301 :FILKNIAEQ 1j24A 127 :LIAKREQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39527 # 2plc.301.238 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 301 :FILKNIAEQ 2plc 259 :QFVLNLTSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39528 # 2bjvA.301.191 read from T0547.t2k.many.frag # found chain 2bjvA in training set T0547 301 :FILKNIAEQ 2bjvA 192 :YFAIQMCRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39529 # 1s7zA.301.16 read from T0547.t2k.many.frag # found chain 1s7zA in template set T0547 301 :FILKNIAEQ 1s7zA 16 :EMLKENIRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39530 # 1kqpA.301.140 read from T0547.t2k.many.frag # found chain 1kqpA in training set T0547 301 :FILKNIAEQ 1kqpA 141 :IAQYAIGGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39531 # 1qsgA.302.171 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 302 :ILKNIAEQK 1qsgA 169 :NVRYMANAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39532 # 1i60A.302.123 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 302 :ILKNIAEQK 1i60A 124 :VLTELSDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39533 # 1fjgT.302.86 read from T0547.t2k.many.frag # found chain 1fjgT in template set T0547 302 :ILKNIAEQK 1fjgT 87 :KVRQLLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39534 # 1vlaA.302.64 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 302 :ILKNIAEQK 1vlaA 53 :DVVSILRKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39535 # 1s4bP.302.300 read from T0547.t2k.many.frag # found chain 1s4bP in template set T0547 302 :ILKNIAEQK 1s4bP 316 :LKRAECERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39536 # 1ukkA.302.60 read from T0547.t2k.many.frag # found chain 1ukkA in training set T0547 302 :ILKNIAEQK 1ukkA 61 :ALAASLERE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39537 # 1cxqA.302.118 read from T0547.t2k.many.frag # found chain 1cxqA in training set T0547 302 :ILKNIAEQK 1cxqA 166 :KIRVLAEGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=39538 # 2bjvA.302.192 read from T0547.t2k.many.frag # found chain 2bjvA in training set T0547 302 :ILKNIAEQK 2bjvA 193 :FAIQMCREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39539 # 1v4sA.302.118 read from T0547.t2k.many.frag # found chain 1v4sA in template set T0547 302 :ILKNIAEQK 1v4sA 129 :CISDFLDKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=39540 # 1vqvA.302.102 read from T0547.t2k.many.frag # found chain 1vqvA in template set T0547 302 :ILKNIAEQK 1vqvA 103 :GVKRACEFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39541 # 2f5gA.302.38 read from T0547.t2k.many.frag # found chain 2f5gA in training set T0547 302 :ILKNIAEQK 2f5gA 39 :VLKSIAEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39542 # 1fiuA.302.75 read from T0547.t2k.many.frag # found chain 1fiuA in training set Warning: unaligning (T0547)K310 (1fiuA)L84 because G (3-10) conformation "forbidden" or filtered. T0547 302 :ILKNIAEQ 1fiuA 76 :FVQSAFEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=39543 # 1u14A.302.58 read from T0547.t2k.many.frag # found chain 1u14A in training set T0547 302 :ILKNIAEQK 1u14A 58 :RVDNARRLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=39544 # 1tca.302.85 read from T0547.t2k.many.frag # found chain 1tca in training set T0547 302 :ILKNIAEQK 1tca 86 :AITALYAGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39545 # 1l1lA.302.527 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 302 :ILKNIAEQK 1l1lA 528 :ADQDYSKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39546 # 1zbsA.302.250 read from T0547.t2k.many.frag # found chain 1zbsA in template set T0547 302 :ILKNIAEQK 1zbsA 251 :VLSSVIKKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39547 # 1txoA.302.79 read from T0547.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0547)K310 (1txoA)E91 because D (zeta) conformation "forbidden" or filtered. T0547 302 :ILKNIAEQ 1txoA 83 :AIAAQVEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=39548 # 1s7zA.302.17 read from T0547.t2k.many.frag # found chain 1s7zA in template set T0547 302 :ILKNIAEQK 1s7zA 17 :MLKENIRYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=39549 # 1y8aA.302.210 read from T0547.t2k.many.frag # found chain 1y8aA in training set T0547 302 :ILKNIAEQK 1y8aA 189 :IMRGYCESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39550 # 1w66A.302.113 read from T0547.t2k.many.frag # found chain 1w66A in training set T0547 302 :ILKNIAEQK 1w66A 112 :SLIQVCADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39551 # 1p4cA.302.331 read from T0547.t2k.many.frag # found chain 1p4cA in training set T0547 302 :ILKNIAEQK 1p4cA 332 :DIDRTLAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39552 # 1up8A.302.449 read from T0547.t2k.many.frag # found chain 1up8A in template set T0547 302 :ILKNIAEQK 1up8A 449 :SNRKQNIAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=39553 # 1kqpA.302.141 read from T0547.t2k.many.frag # found chain 1kqpA in training set T0547 302 :ILKNIAEQK 1kqpA 142 :AQYAIGGQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39554 # 1ysjA.302.294 read from T0547.t2k.many.frag # found chain 1ysjA in template set T0547 302 :ILKNIAEQK 1ysjA 271 :VAEGIAAGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39555 # 1evlA.302.198 read from T0547.t2k.many.frag # found chain 1evlA in training set T0547 302 :ILKNIAEQK 1evlA 440 :DLAVALEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=39556 # 1tg6A.302.101 read from T0547.t2k.many.frag # found chain 1tg6A in template set Warning: unaligning (T0547)K310 (1tg6A)S54 because Y (epsilon') conformation "forbidden" or filtered. T0547 302 :ILKNIAEQ 1tg6A 46 :QLLFLQSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=39557 # 1mun.302.91 read from T0547.t2k.many.frag # found chain 1mun in training set T0547 302 :ILKNIAEQK 1mun 92 :AAQQVATLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=39558 2f6hX expands to /projects/compbio/data/pdb/2f6h.pdb.gz 2f6hX:# 2f6hX.302.267 read from T0547.t2k.many.frag # adding 2f6hX to template set # found chain 2f6hX in template set T0547 302 :ILKNIAEQK 2f6hX 289 :RLEEWCKTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=39559 # 2plc.302.239 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 302 :ILKNIAEQK 2plc 260 :FVLNLTSEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39560 # 1k8qA.302.133 read from T0547.t2k.many.frag # found chain 1k8qA in template set T0547 302 :ILKNIAEQK 1k8qA 134 :TIDFILKKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=39561 # 1qsgA.303.172 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 303 :LKNIAEQKK 1qsgA 170 :VRYMANAMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39562 # 1i60A.303.124 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 303 :LKNIAEQKK 1i60A 125 :LTELSDIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39563 # 1fjgT.303.87 read from T0547.t2k.many.frag # found chain 1fjgT in template set Warning: unaligning (T0547)K311 (1fjgT)G96 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1fjgT 88 :VRQLLEAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=39564 # 1s4bP.303.301 read from T0547.t2k.many.frag # found chain 1s4bP in template set T0547 303 :LKNIAEQKK 1s4bP 317 :KRAECERRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39565 # 2bjvA.303.193 read from T0547.t2k.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)K311 (2bjvA)K202 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 2bjvA 194 :AIQMCREI Number of specific fragments extracted= 1 number of extra gaps= 1 total=39566 # 1vlaA.303.65 read from T0547.t2k.many.frag # found chain 1vlaA in training set Warning: unaligning (T0547)K310 (1vlaA)M61 because G (3-10) conformation "forbidden" or filtered. T0547 303 :LKNIAEQ 1vlaA 54 :VVSILRK T0547 311 :K 1vlaA 62 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=39568 # 1vqvA.303.103 read from T0547.t2k.many.frag # found chain 1vqvA in template set T0547 303 :LKNIAEQKK 1vqvA 104 :VKRACEFYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39569 # 1tca.303.86 read from T0547.t2k.many.frag # found chain 1tca in training set T0547 303 :LKNIAEQKK 1tca 87 :ITALYAGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39570 # 1v4sA.303.119 read from T0547.t2k.many.frag # found chain 1v4sA in template set Warning: unaligning (T0547)K311 (1v4sA)Q138 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1v4sA 130 :ISDFLDKH Number of specific fragments extracted= 1 number of extra gaps= 1 total=39571 # 1u14A.303.59 read from T0547.t2k.many.frag # found chain 1u14A in training set T0547 303 :LKNIAEQKK 1u14A 59 :VDNARRLHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=39572 # 1ukkA.303.61 read from T0547.t2k.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)K310 (1ukkA)E69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1ukkA)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 303 :LKNIAEQ 1ukkA 62 :LAASLER Number of specific fragments extracted= 1 number of extra gaps= 1 total=39573 # 1k8qA.303.134 read from T0547.t2k.many.frag # found chain 1k8qA in template set T0547 303 :LKNIAEQKK 1k8qA 135 :IDFILKKTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39574 # 1fiuA.303.76 read from T0547.t2k.many.frag # found chain 1fiuA in training set T0547 303 :LKNIAEQKK 1fiuA 77 :VQSAFEKLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39575 # 1cxqA.303.119 read from T0547.t2k.many.frag # found chain 1cxqA in training set T0547 303 :LKNIAEQKK 1cxqA 167 :IRVLAEGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39576 # 1zbsA.303.251 read from T0547.t2k.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)K311 (1zbsA)G260 because T (delta_L) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1zbsA 252 :LSSVIKKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=39577 # 2f6hX.303.268 read from T0547.t2k.many.frag # found chain 2f6hX in template set Warning: unaligning (T0547)K310 (2f6hX)H297 because G (3-10) conformation "forbidden" or filtered. T0547 303 :LKNIAEQ 2f6hX 290 :LEEWCKT T0547 311 :K 2f6hX 298 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=39579 # 1mun.303.92 read from T0547.t2k.many.frag # found chain 1mun in training set T0547 303 :LKNIAEQKK 1mun 93 :AQQVATLHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39580 # 1ufyA.303.26 read from T0547.t2k.many.frag # found chain 1ufyA in training set Warning: unaligning (T0547)K311 (1ufyA)G35 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1ufyA 27 :LLKMLEAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=39581 # 1y8aA.303.211 read from T0547.t2k.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1y8aA 190 :MRGYCESK Number of specific fragments extracted= 1 number of extra gaps= 1 total=39582 # 1kr7A.303.86 read from T0547.t2k.many.frag # found chain 1kr7A in training set Warning: unaligning (T0547)K311 (1kr7A)G94 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1kr7A 86 :LAKACSAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=39583 2baa expands to /projects/compbio/data/pdb/2baa.pdb.gz 2baa:Warning: there is no chain 2baa will retry with 2baaA # 2baa.303.218 read from T0547.t2k.many.frag # adding 2baa to template set # found chain 2baa in template set T0547 303 :LKNIAEQKK 2baa 219 :YKRYCDILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39584 # 1v33A.303.148 read from T0547.t2k.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)K311 (1v33A)G137 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1v33A 129 :VIILREEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=39585 # 2f5gA.303.39 read from T0547.t2k.many.frag # found chain 2f5gA in training set Warning: unaligning (T0547)K311 (2f5gA)G48 because T (delta_L) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 2f5gA 40 :LKSIAEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=39586 # 1xdnA.303.91 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 303 :LKNIAEQKK 1xdnA 139 :NDLLKQKYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39587 # 1w66A.303.114 read from T0547.t2k.many.frag # found chain 1w66A in training set T0547 303 :LKNIAEQKK 1w66A 113 :LIQVCADLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39588 # 1dljA.303.297 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 303 :LKNIAEQKK 1dljA 298 :IINVLKEQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39589 # 1l1lA.303.528 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 303 :LKNIAEQKK 1l1lA 529 :DQDYSKTLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39590 # 1evlA.303.199 read from T0547.t2k.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)K311 (1evlA)N449 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1evlA 441 :LAVALEEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=39591 # 1u5uA.303.52 read from T0547.t2k.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)K311 (1u5uA)G61 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1u5uA 53 :FTLGTTLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=39592 1ylmA expands to /projects/compbio/data/pdb/1ylm.pdb.gz 1ylmA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ylmA.303.52 read from T0547.t2k.many.frag # adding 1ylmA to template set # found chain 1ylmA in template set Warning: unaligning (T0547)K311 (1ylmA)I61 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1ylmA 53 :GNDMIDGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=39593 # 1qsgA.304.173 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 304 :KNIAEQKKD 1qsgA 171 :RYMANAMGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=39594 # 1ukkA.304.62 read from T0547.t2k.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)K310 (1ukkA)E69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1ukkA)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQ 1ukkA 63 :AASLER T0547 312 :D 1ukkA 71 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=39596 # 1s4bP.304.302 read from T0547.t2k.many.frag # found chain 1s4bP in template set Warning: unaligning (T0547)K311 (1s4bP)G325 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1s4bP 318 :RAECERR T0547 312 :D 1s4bP 326 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=39598 # 2bjvA.304.194 read from T0547.t2k.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)K310 (2bjvA)I201 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (2bjvA)K202 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQ 2bjvA 195 :IQMCRE T0547 312 :D 2bjvA 203 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=39600 # 1fjgT.304.88 read from T0547.t2k.many.frag # found chain 1fjgT in template set Warning: unaligning (T0547)K311 (1fjgT)G96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1fjgT)A97 because E (beta_S) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1fjgT 89 :RQLLEAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=39601 # 1i60A.304.125 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 304 :KNIAEQKKD 1i60A 126 :TELSDIAEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=39602 # 1u5uA.304.53 read from T0547.t2k.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)K311 (1u5uA)G61 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1u5uA 54 :TLGTTLK T0547 312 :D 1u5uA 62 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=39604 # 1y8aA.304.212 read from T0547.t2k.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1y8aA 191 :RGYCESK T0547 312 :D 1y8aA 199 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=39606 # 1vlaA.304.66 read from T0547.t2k.many.frag # found chain 1vlaA in training set T0547 304 :KNIAEQKKD 1vlaA 55 :VSILRKMKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39607 # 1tca.304.87 read from T0547.t2k.many.frag # found chain 1tca in training set Warning: unaligning (T0547)K310 (1tca)S94 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1tca)G95 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQ 1tca 88 :TALYAG T0547 312 :D 1tca 96 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=39609 # 1zbsA.304.252 read from T0547.t2k.many.frag # found chain 1zbsA in template set T0547 304 :KNIAEQKKD 1zbsA 253 :SSVIKKRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39610 # 1kr7A.304.87 read from T0547.t2k.many.frag # found chain 1kr7A in training set Warning: unaligning (T0547)K310 (1kr7A)H93 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1kr7A)G94 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQ 1kr7A 87 :AKACSA T0547 312 :D 1kr7A 95 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=39612 # 1u14A.304.60 read from T0547.t2k.many.frag # found chain 1u14A in training set T0547 304 :KNIAEQKKD 1u14A 60 :DNARRLHPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39613 # 1dljA.304.298 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 304 :KNIAEQKKD 1dljA 299 :INVLKEQES Number of specific fragments extracted= 1 number of extra gaps= 0 total=39614 # 2f6hX.304.269 read from T0547.t2k.many.frag # found chain 2f6hX in template set Warning: unaligning (T0547)D312 (2f6hX)L299 because N (gamma') conformation "forbidden" or filtered. T0547 304 :KNIAEQKK 2f6hX 291 :EEWCKTHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=39615 # 1v4sA.304.120 read from T0547.t2k.many.frag # found chain 1v4sA in template set T0547 304 :KNIAEQKKD 1v4sA 131 :SDFLDKHQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=39616 # 1cxqA.304.120 read from T0547.t2k.many.frag # found chain 1cxqA in training set T0547 304 :KNIAEQKKD 1cxqA 168 :RVLAEGDGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=39617 # 1iirA.304.170 read from T0547.t2k.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)K311 (1iirA)G178 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1iirA 171 :NSHRDAI T0547 312 :D 1iirA 179 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=39619 # 1mun.304.93 read from T0547.t2k.many.frag # found chain 1mun in training set T0547 304 :KNIAEQKKD 1mun 94 :QQVATLHGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39620 # 1vqvA.304.104 read from T0547.t2k.many.frag # found chain 1vqvA in template set Warning: unaligning (T0547)D312 (1vqvA)C113 because Y (epsilon') conformation "forbidden" or filtered. T0547 304 :KNIAEQKK 1vqvA 105 :KRACEFYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=39621 # 1k8qA.304.135 read from T0547.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)K311 (1k8qA)G143 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1k8qA 136 :DFILKKT T0547 312 :D 1k8qA 144 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=39623 # 1xdnA.304.92 read from T0547.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)K311 (1xdnA)G147 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1xdnA)L148 because E (beta_S) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1xdnA 140 :DLLKQKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=39624 # 1evlA.304.200 read from T0547.t2k.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)K311 (1evlA)N449 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1evlA 442 :AVALEEN T0547 312 :D 1evlA 450 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=39626 # 1w66A.304.115 read from T0547.t2k.many.frag # found chain 1w66A in training set Warning: unaligning (T0547)K311 (1w66A)G121 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1w66A 114 :IQVCADL T0547 312 :D 1w66A 122 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=39628 # 1gwyA.304.17 read from T0547.t2k.many.frag # found chain 1gwyA in training set Warning: unaligning (T0547)K311 (1gwyA)G25 because S (epsilon) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1gwyA 18 :DKVLEEL T0547 312 :D 1gwyA 26 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=39630 # 1v33A.304.149 read from T0547.t2k.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)K311 (1v33A)G137 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1v33A 130 :IILREEL T0547 312 :D 1v33A 138 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=39632 # 1ne9A.304.199 read from T0547.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)K311 (1ne9A)G207 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1ne9A 200 :TTMAERH T0547 312 :D 1ne9A 208 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=39634 # 1wdpA.304.278 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)D312 (1wdpA)G287 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQKK 1wdpA 279 :DEANKAFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=39635 1di2A expands to /projects/compbio/data/pdb/1di2.pdb.gz 1di2A:Skipped atom 854, because occupancy 0.500 <= existing 0.500 in 1di2A Skipped atom 856, because occupancy 0.500 <= existing 0.500 in 1di2A Skipped atom 858, because occupancy 0.500 <= existing 0.500 in 1di2A Skipped atom 860, because occupancy 0.500 <= existing 0.500 in 1di2A Skipped atom 862, because occupancy 0.500 <= existing 0.500 in 1di2A Skipped atom 864, because occupancy 0.500 <= existing 0.500 in 1di2A Skipped atom 866, because occupancy 0.500 <= existing 0.500 in 1di2A Skipped atom 868, because occupancy 0.500 <= existing 0.500 in 1di2A Skipped atom 1234, because occupancy 0.500 <= existing 0.500 in 1di2A Skipped atom 1236, because occupancy 0.500 <= existing 0.500 in 1di2A Skipped atom 1238, because occupancy 0.500 <= existing 0.500 in 1di2A Skipped atom 1240, because occupancy 0.500 <= existing 0.500 in 1di2A Skipped atom 1242, because occupancy 0.500 <= existing 0.500 in 1di2A Skipped atom 1244, because occupancy 0.500 <= existing 0.500 in 1di2A # 1di2A.304.6 read from T0547.t2k.many.frag # adding 1di2A to template set # found chain 1di2A in template set Warning: unaligning (T0547)K311 (1di2A)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1di2A 118 :QELAVQK T0547 312 :D 1di2A 126 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=39637 # 2plc.304.241 read from T0547.t2k.many.frag # found chain 2plc in template set T0547 304 :KNIAEQKKD 2plc 262 :LNLTSEKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39638 # 1ukkA.305.63 read from T0547.t2k.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)K311 (1ukkA)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1ukkA 64 :ASLERE T0547 312 :DL 1ukkA 71 :FP Number of specific fragments extracted= 2 number of extra gaps= 1 total=39640 # 1tca.305.88 read from T0547.t2k.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQKK 1tca 89 :ALYAGSG T0547 313 :L 1tca 97 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=39642 # 1qsgA.305.174 read from T0547.t2k.many.frag # found chain 1qsgA in training set T0547 305 :NIAEQKKDL 1qsgA 172 :YMANAMGPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=39643 # 1zbsA.305.253 read from T0547.t2k.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)K311 (1zbsA)G260 because T (delta_L) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1zbsA 254 :SVIKKR T0547 312 :DL 1zbsA 261 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=39645 # 1i60A.305.126 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 305 :NIAEQKKDL 1i60A 127 :ELSDIAEPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=39646 # 1gwyA.305.18 read from T0547.t2k.many.frag # found chain 1gwyA in training set T0547 305 :NIAEQKKDL 1gwyA 19 :KVLEELGKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39647 # 1kr7A.305.88 read from T0547.t2k.many.frag # found chain 1kr7A in training set Warning: unaligning (T0547)K311 (1kr7A)G94 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1kr7A 88 :KACSAH T0547 312 :DL 1kr7A 95 :AP Number of specific fragments extracted= 2 number of extra gaps= 1 total=39649 # 1fjgT.305.89 read from T0547.t2k.many.frag # found chain 1fjgT in template set Warning: unaligning (T0547)K311 (1fjgT)G96 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1fjgT 90 :QLLEAA T0547 312 :DL 1fjgT 97 :AP Number of specific fragments extracted= 2 number of extra gaps= 1 total=39651 # 1iirA.305.171 read from T0547.t2k.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)K311 (1iirA)G178 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1iirA 172 :SHRDAI T0547 312 :DL 1iirA 179 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=39653 # 1u14A.305.61 read from T0547.t2k.many.frag # found chain 1u14A in training set T0547 305 :NIAEQKKDL 1u14A 61 :NARRLHPQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39654 # 1y8aA.305.213 read from T0547.t2k.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1y8aA 192 :GYCESK T0547 312 :DL 1y8aA 199 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=39656 # 2bjvA.305.195 read from T0547.t2k.many.frag # found chain 2bjvA in training set T0547 305 :NIAEQKKDL 2bjvA 196 :QMCREIKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=39657 # 1k8qA.305.136 read from T0547.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)K311 (1k8qA)G143 because T (delta_L) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1k8qA 137 :FILKKT T0547 312 :DL 1k8qA 144 :QD Number of specific fragments extracted= 2 number of extra gaps= 1 total=39659 # 1di2A.305.7 read from T0547.t2k.many.frag # found chain 1di2A in template set Warning: unaligning (T0547)K311 (1di2A)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1di2A 119 :ELAVQK T0547 312 :DL 1di2A 126 :WR Number of specific fragments extracted= 2 number of extra gaps= 1 total=39661 # 1dljA.305.299 read from T0547.t2k.many.frag # found chain 1dljA in training set Warning: unaligning (T0547)K310 (1dljA)Q305 because E (beta_S) conformation "forbidden" or filtered. T0547 305 :NIAEQ 1dljA 300 :NVLKE T0547 311 :KDL 1dljA 306 :ESP Number of specific fragments extracted= 2 number of extra gaps= 1 total=39663 # 1u5uA.305.54 read from T0547.t2k.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)D312 (1u5uA)F62 because T (delta_L) conformation "forbidden" or filtered. T0547 305 :NIAEQKK 1u5uA 55 :LGTTLKG T0547 313 :L 1u5uA 63 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=39665 # 1vlaA.305.67 read from T0547.t2k.many.frag # found chain 1vlaA in training set Warning: unaligning (T0547)K311 (1vlaA)K62 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1vlaA 56 :SILRKM T0547 312 :DL 1vlaA 63 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=39667 # 1s4bP.305.303 read from T0547.t2k.many.frag # found chain 1s4bP in template set Warning: unaligning (T0547)K311 (1s4bP)G325 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1s4bP 319 :AECERR T0547 312 :DL 1s4bP 326 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=39669 # 1mun.305.94 read from T0547.t2k.many.frag # found chain 1mun in training set Warning: unaligning (T0547)K311 (1mun)G101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1mun)G102 because T (delta_L) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1mun 95 :QVATLH T0547 313 :L 1mun 103 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=39671 # 1wdpA.305.279 read from T0547.t2k.many.frag # found chain 1wdpA in training set T0547 305 :NIAEQKKDL 1wdpA 280 :EANKAFLGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=39672 # 2b61A.305.144 read from T0547.t2k.many.frag # found chain 2b61A in training set T0547 305 :NIAEQKKDL 2b61A 126 :ALLEHLGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39673 # 1xdnA.305.93 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 305 :NIAEQKKDL 1xdnA 141 :LLKQKYGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39674 # 1w66A.305.116 read from T0547.t2k.many.frag # found chain 1w66A in training set Warning: unaligning (T0547)K311 (1w66A)G121 because T (delta_L) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1w66A 115 :QVCADL T0547 312 :DL 1w66A 122 :LH Number of specific fragments extracted= 2 number of extra gaps= 1 total=39676 1nv8A expands to /projects/compbio/data/pdb/1nv8.pdb.gz 1nv8A:Skipped atom 799, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 801, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 803, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 805, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 807, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1195, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1197, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1199, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1201, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1626, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1628, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1630, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1632, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1634, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1778, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1780, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1782, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1784, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1786, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1788, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1790, because occupancy 0.500 <= existing 0.500 in 1nv8A # 1nv8A.305.232 read from T0547.t2k.many.frag # adding 1nv8A to template set # found chain 1nv8A in template set Warning: unaligning (T0547)K311 (1nv8A)D237 because P (beta_P) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1nv8A 231 :EFFGRY T0547 312 :DL 1nv8A 238 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=39678 # 1fp2A.305.325 read from T0547.t2k.many.frag # found chain 1fp2A in training set T0547 305 :NIAEQKKDL 1fp2A 326 :KLFIEAGFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=39679 # 1ne9A.305.200 read from T0547.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)K311 (1ne9A)G207 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1ne9A 201 :TMAERH T0547 312 :DL 1ne9A 208 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=39681 # 1v33A.305.150 read from T0547.t2k.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)K311 (1v33A)G137 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1v33A 131 :ILREEL T0547 312 :DL 1v33A 138 :FN Number of specific fragments extracted= 2 number of extra gaps= 1 total=39683 # 2baa.305.220 read from T0547.t2k.many.frag # found chain 2baa in template set Warning: unaligning (T0547)K311 (2baa)G227 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 2baa 221 :RYCDIL T0547 312 :DL 2baa 228 :VG Number of specific fragments extracted= 2 number of extra gaps= 1 total=39685 # 1xdzA.305.111 read from T0547.t2k.many.frag # found chain 1xdzA in training set Warning: unaligning (T0547)K311 (1xdzA)Q117 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1xdzA 111 :KLSEAL T0547 312 :DL 1xdzA 118 :LE Number of specific fragments extracted= 2 number of extra gaps= 1 total=39687 1fiqB expands to /projects/compbio/data/pdb/1fiq.pdb.gz 1fiqB:# 1fiqB.305.46 read from T0547.t2k.many.frag # adding 1fiqB to template set # found chain 1fiqB in template set Warning: unaligning (T0547)K311 (1fiqB)N272 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1fiqB 266 :IEMKFK T0547 312 :DL 1fiqB 273 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=39689 # 1y8aA.306.214 read from T0547.t2k.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQK 1y8aA 193 :YCESK T0547 312 :DLE 1y8aA 199 :IDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=39691 # 1di2A.306.8 read from T0547.t2k.many.frag # found chain 1di2A in template set Warning: unaligning (T0547)K311 (1di2A)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 306 :IAEQK 1di2A 120 :LAVQK T0547 312 :DLE 1di2A 126 :WRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=39693 # 1zbsA.306.254 read from T0547.t2k.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)K311 (1zbsA)G260 because T (delta_L) conformation "forbidden" or filtered. T0547 306 :IAEQK 1zbsA 255 :VIKKR T0547 312 :DLE 1zbsA 261 :LTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=39695 # 1ukkA.306.64 read from T0547.t2k.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)K311 (1ukkA)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 306 :IAEQK 1ukkA 65 :SLERE T0547 312 :DLE 1ukkA 71 :FPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=39697 # 1tca.306.89 read from T0547.t2k.many.frag # found chain 1tca in training set Warning: unaligning (T0547)K311 (1tca)G95 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQK 1tca 90 :LYAGS T0547 313 :LE 1tca 97 :NK Number of specific fragments extracted= 2 number of extra gaps= 1 total=39699 # 1k8qA.306.137 read from T0547.t2k.many.frag # found chain 1k8qA in template set T0547 306 :IAEQKKDLE 1k8qA 138 :ILKKTGQDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39700 # 1gwyA.306.19 read from T0547.t2k.many.frag # found chain 1gwyA in training set Warning: unaligning (T0547)K311 (1gwyA)G25 because S (epsilon) conformation "forbidden" or filtered. T0547 306 :IAEQK 1gwyA 20 :VLEEL T0547 312 :DLE 1gwyA 26 :KVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=39702 # 2cbiA.306.287 read from T0547.t2k.many.frag # found chain 2cbiA in template set Warning: unaligning (T0547)K311 (2cbiA)G323 because T (delta_L) conformation "forbidden" or filtered. T0547 306 :IAEQK 2cbiA 318 :FVKAK T0547 312 :DLE 2cbiA 324 :DVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=39704 # 1i60A.306.127 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 306 :IAEQKKDLE 1i60A 128 :LSDIAEPYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=39705 # 1qsgA.306.175 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)K310 (1qsgA)M177 because G (3-10) conformation "forbidden" or filtered. T0547 306 :IAEQ 1qsgA 173 :MANA T0547 311 :KDLE 1qsgA 178 :GPEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=39707 # 1iirA.306.172 read from T0547.t2k.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)K311 (1iirA)G178 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQK 1iirA 173 :HRDAI T0547 312 :DLE 1iirA 179 :LPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=39709 # 1kr7A.306.89 read from T0547.t2k.many.frag # found chain 1kr7A in training set Warning: unaligning (T0547)K311 (1kr7A)G94 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1kr7A)A95 because P (beta_P) conformation "forbidden" or filtered. T0547 306 :IAEQK 1kr7A 89 :ACSAH T0547 313 :LE 1kr7A 96 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=39711 # 1xdzA.306.112 read from T0547.t2k.many.frag # found chain 1xdzA in training set Warning: unaligning (T0547)K311 (1xdzA)Q117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1xdzA)L118 because P (beta_P) conformation "forbidden" or filtered. T0547 306 :IAEQK 1xdzA 112 :LSEAL T0547 313 :LE 1xdzA 119 :EN Number of specific fragments extracted= 2 number of extra gaps= 1 total=39713 # 2b61A.306.145 read from T0547.t2k.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)K311 (2b61A)G132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (2b61A)I133 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2b61A)H135 because Y (epsilon') conformation "forbidden" or filtered. T0547 306 :IAEQK 2b61A 127 :LLEHL T0547 313 :L 2b61A 134 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=39715 # 1fp2A.306.326 read from T0547.t2k.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)E314 (1fp2A)H335 because Y (epsilon') conformation "forbidden" or filtered. T0547 306 :IAEQKKDL 1fp2A 327 :LFIEAGFQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=39716 # 2yhx.306.375 read from T0547.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)K311 (2yhx)G382 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQK 2yhx 377 :ICQKK T0547 312 :DLE 2yhx 383 :YSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=39718 # 1fjgT.306.90 read from T0547.t2k.many.frag # found chain 1fjgT in template set Warning: unaligning (T0547)K311 (1fjgT)G96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1fjgT)L99 because N (gamma') conformation "forbidden" or filtered. T0547 306 :IAEQK 1fjgT 91 :LLEAA T0547 312 :DL 1fjgT 97 :AP Number of specific fragments extracted= 2 number of extra gaps= 2 total=39720 # 1fiqB.306.47 read from T0547.t2k.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K311 (1fiqB)N272 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQK 1fiqB 267 :EMKFK T0547 312 :DLE 1fiqB 273 :QLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=39722 # 1v7zA.306.136 read from T0547.t2k.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)K310 (1v7zA)A141 because G (3-10) conformation "forbidden" or filtered. T0547 306 :IAEQ 1v7zA 137 :ELRY T0547 311 :KDLE 1v7zA 142 :GIQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=39724 1fi4A expands to /projects/compbio/data/pdb/1fi4.pdb.gz 1fi4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1fi4A.306.307 read from T0547.t2k.many.frag # adding 1fi4A to template set # found chain 1fi4A in template set Warning: unaligning (T0547)K311 (1fi4A)G293 because T (delta_L) conformation "forbidden" or filtered. T0547 306 :IAEQK 1fi4A 288 :INQFY T0547 312 :DLE 1fi4A 294 :ETI Number of specific fragments extracted= 2 number of extra gaps= 1 total=39726 # 1u14A.306.62 read from T0547.t2k.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)K310 (1u14A)H66 because D (zeta) conformation "forbidden" or filtered. T0547 306 :IAEQ 1u14A 62 :ARRL T0547 311 :KDLE 1u14A 67 :PQAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=39728 # 1dljA.306.300 read from T0547.t2k.many.frag # found chain 1dljA in training set Warning: unaligning (T0547)K310 (1dljA)Q305 because E (beta_S) conformation "forbidden" or filtered. T0547 306 :IAEQ 1dljA 301 :VLKE T0547 311 :KDLE 1dljA 306 :ESPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=39730 # 1xdnA.306.94 read from T0547.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)D312 (1xdnA)L148 because E (beta_S) conformation "forbidden" or filtered. T0547 306 :IAEQKK 1xdnA 142 :LKQKYG T0547 313 :LE 1xdnA 149 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=39732 # 1wdpA.306.280 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)K310 (1wdpA)F285 because G (3-10) conformation "forbidden" or filtered. T0547 306 :IAEQ 1wdpA 281 :ANKA T0547 311 :KDLE 1wdpA 286 :LGCK Number of specific fragments extracted= 2 number of extra gaps= 1 total=39734 # 1ne9A.306.201 read from T0547.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)K311 (1ne9A)G207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1ne9A)I208 because E (beta_S) conformation "forbidden" or filtered. T0547 306 :IAEQK 1ne9A 202 :MAERH T0547 313 :LE 1ne9A 209 :TH Number of specific fragments extracted= 2 number of extra gaps= 1 total=39736 # 1ylxA.306.22 read from T0547.t2k.many.frag # found chain 1ylxA in training set Warning: unaligning (T0547)K310 (1ylxA)Y24 because G (3-10) conformation "forbidden" or filtered. T0547 306 :IAEQ 1ylxA 20 :MMEA T0547 311 :KDLE 1ylxA 25 :GLDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=39738 # 1v33A.306.151 read from T0547.t2k.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)K311 (1v33A)G137 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1v33A)D140 because D (zeta) conformation "forbidden" or filtered. T0547 306 :IAEQK 1v33A 132 :LREEL T0547 312 :DL 1v33A 138 :FN Number of specific fragments extracted= 2 number of extra gaps= 2 total=39740 # 1xd8A.306.167 read from T0547.t2k.many.frag # found chain 1xd8A in template set T0547 306 :IAEQKKDLE 1xd8A 168 :IVKYANSGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=39741 # 1xp8A.306.192 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)D312 (1xp8A)K196 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1xp8A)G198 because T (delta_L) conformation "forbidden" or filtered. T0547 306 :IAEQKK 1xp8A 190 :LTAILS T0547 313 :L 1xp8A 197 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=39743 # 1nnlA.306.164 read from T0547.t2k.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)K310 (1nnlA)F169 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1nnlA)H170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1nnlA)K173 because D (zeta) conformation "forbidden" or filtered. T0547 306 :IAEQ 1nnlA 165 :LKEK T0547 312 :DL 1nnlA 171 :FK Number of specific fragments extracted= 2 number of extra gaps= 2 total=39745 # 1y8aA.307.215 read from T0547.t2k.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1y8aA)F201 because D (zeta) conformation "forbidden" or filtered. T0547 307 :AEQK 1y8aA 194 :CESK T0547 312 :DL 1y8aA 199 :ID T0547 315 :P 1y8aA 202 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=39748 # 1tca.307.90 read from T0547.t2k.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKK 1tca 91 :YAGSG T0547 313 :LE 1tca 97 :NK Number of specific fragments extracted= 2 number of extra gaps= 2 total=39750 # 1di2A.307.9 read from T0547.t2k.many.frag # found chain 1di2A in template set Warning: unaligning (T0547)K311 (1di2A)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 307 :AEQK 1di2A 121 :AVQK T0547 312 :DLEP 1di2A 126 :WRLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=39752 # 2cbiA.307.288 read from T0547.t2k.many.frag # found chain 2cbiA in template set Warning: unaligning (T0547)K311 (2cbiA)G323 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2cbiA)K326 because P (beta_P) conformation "forbidden" or filtered. T0547 307 :AEQK 2cbiA 319 :VKAK T0547 312 :DL 2cbiA 324 :DV T0547 315 :P 2cbiA 327 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=39755 # 1k8qA.307.138 read from T0547.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)K311 (1k8qA)G143 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. T0547 307 :AEQK 1k8qA 139 :LKKT T0547 312 :DL 1k8qA 144 :QD Number of specific fragments extracted= 2 number of extra gaps= 2 total=39757 # 1zbsA.307.255 read from T0547.t2k.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)K311 (1zbsA)G260 because T (delta_L) conformation "forbidden" or filtered. T0547 307 :AEQK 1zbsA 256 :IKKR T0547 312 :DLEP 1zbsA 261 :LTLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=39759 # 1gwyA.307.20 read from T0547.t2k.many.frag # found chain 1gwyA in training set Warning: unaligning (T0547)P315 (1gwyA)R29 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKKDLE 1gwyA 21 :LEELGKVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=39760 # 2yhx.307.376 read from T0547.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)K311 (2yhx)G382 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2yhx)G386 because Y (epsilon') conformation "forbidden" or filtered. T0547 307 :AEQK 2yhx 378 :CQKK T0547 312 :DLE 2yhx 383 :YSS Number of specific fragments extracted= 2 number of extra gaps= 2 total=39762 # 1xdzA.307.113 read from T0547.t2k.many.frag # found chain 1xdzA in training set Warning: unaligning (T0547)K311 (1xdzA)Q117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1xdzA)T121 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 1xdzA 113 :SEAL T0547 312 :DLE 1xdzA 118 :LEN Number of specific fragments extracted= 2 number of extra gaps= 2 total=39764 # 1fi4A.307.308 read from T0547.t2k.many.frag # found chain 1fi4A in template set Warning: unaligning (T0547)K311 (1fi4A)G293 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1fi4A)E294 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1fi4A)V297 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 1fi4A 289 :NQFY T0547 313 :LE 1fi4A 295 :TI Number of specific fragments extracted= 2 number of extra gaps= 2 total=39766 # 1fp2A.307.327 read from T0547.t2k.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)K311 (1fp2A)G332 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1fp2A)H335 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1fp2A)Y336 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 1fp2A 328 :FIEA T0547 312 :DL 1fp2A 333 :FQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=39768 # 1i60A.307.128 read from T0547.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)E314 (1i60A)G136 because T (delta_L) conformation "forbidden" or filtered. T0547 307 :AEQKKDL 1i60A 129 :SDIAEPY T0547 315 :P 1i60A 137 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=39770 # 1xp8A.307.193 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)E314 (1xp8A)G198 because T (delta_L) conformation "forbidden" or filtered. T0547 307 :AEQKKDL 1xp8A 191 :TAILSKT T0547 315 :P 1xp8A 199 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=39772 # 1ukkA.307.65 read from T0547.t2k.many.frag # found chain 1ukkA in training set T0547 307 :AEQKKDLEP 1ukkA 66 :LEREGFPPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39773 # 1wdpA.307.281 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)K310 (1wdpA)F285 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1wdpA)V290 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQ 1wdpA 282 :NKA T0547 311 :KDLE 1wdpA 286 :LGCK Number of specific fragments extracted= 2 number of extra gaps= 2 total=39775 # 2b61A.307.146 read from T0547.t2k.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)K311 (2b61A)G132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2b61A)H135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2b61A)L136 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 2b61A 128 :LEHL T0547 312 :DL 2b61A 133 :IS Number of specific fragments extracted= 2 number of extra gaps= 2 total=39777 # 1iirA.307.173 read from T0547.t2k.many.frag # found chain 1iirA in training set T0547 307 :AEQKKDLEP 1iirA 174 :RDAIGLPPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39778 # 1u14A.307.63 read from T0547.t2k.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)K310 (1u14A)H66 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1u14A)F71 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQ 1u14A 63 :RRL T0547 311 :KDLE 1u14A 67 :PQAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=39780 # 1fiqB.307.48 read from T0547.t2k.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K311 (1fiqB)N272 because L (left) conformation "forbidden" or filtered. T0547 307 :AEQK 1fiqB 268 :MKFK T0547 312 :DLEP 1fiqB 273 :QLFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=39782 # 1xd8A.307.168 read from T0547.t2k.many.frag # found chain 1xd8A in template set T0547 307 :AEQKKDLEP 1xd8A 169 :VKYANSGSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39783 # 1kr7A.307.90 read from T0547.t2k.many.frag # found chain 1kr7A in training set Warning: unaligning (T0547)K311 (1kr7A)G94 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1kr7A)A95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1kr7A)L98 because G (3-10) conformation "forbidden" or filtered. T0547 307 :AEQK 1kr7A 90 :CSAH T0547 313 :LE 1kr7A 96 :PD Number of specific fragments extracted= 2 number of extra gaps= 2 total=39785 # 1ylxA.307.23 read from T0547.t2k.many.frag # found chain 1ylxA in training set Warning: unaligning (T0547)K310 (1ylxA)Y24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1ylxA)G25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1ylxA)V29 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQ 1ylxA 21 :MEA T0547 312 :DLE 1ylxA 26 :LDQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=39787 # 1qsgA.307.176 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)E314 (1qsgA)G181 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1qsgA)V182 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKKDL 1qsgA 174 :ANAMGPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=39788 # 1dljA.307.301 read from T0547.t2k.many.frag # found chain 1dljA in training set Warning: unaligning (T0547)K311 (1dljA)E306 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1dljA)K310 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 1dljA 302 :LKEQ T0547 312 :DLE 1dljA 307 :SPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=39790 # 1v7zA.307.137 read from T0547.t2k.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)K311 (1v7zA)G142 because L (left) conformation "forbidden" or filtered. T0547 307 :AEQK 1v7zA 138 :LRYA T0547 312 :DLEP 1v7zA 143 :IQDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=39792 1m0dA expands to /projects/compbio/data/pdb/1m0d.pdb.gz 1m0dA:# 1m0dA.307.70 read from T0547.t2k.many.frag # adding 1m0dA to template set # found chain 1m0dA in template set Warning: unaligning (T0547)P315 (1m0dA)I90 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKKDLE 1m0dA 82 :REQHPELD Number of specific fragments extracted= 1 number of extra gaps= 1 total=39793 # 1nnlA.307.165 read from T0547.t2k.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)K311 (1nnlA)H170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1nnlA)I174 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 1nnlA 166 :KEKF T0547 312 :DLE 1nnlA 171 :FKK Number of specific fragments extracted= 2 number of extra gaps= 2 total=39795 # 1v33A.307.152 read from T0547.t2k.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)K311 (1v33A)G137 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1v33A)I141 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 1v33A 133 :REEL T0547 312 :DLE 1v33A 138 :FND Number of specific fragments extracted= 2 number of extra gaps= 2 total=39797 # 1tjyA.307.207 read from T0547.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)K311 (1tjyA)K236 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1tjyA)N239 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tjyA)L240 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 1tjyA 232 :AENL T0547 312 :DL 1tjyA 237 :RN Number of specific fragments extracted= 2 number of extra gaps= 2 total=39799 # 1xdnA.307.95 read from T0547.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)P315 (1xdnA)V151 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKKDLE 1xdnA 143 :KQKYGLSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=39800 # 1y8aA.308.216 read from T0547.t2k.many.frag # found chain 1y8aA in training set T0547 308 :EQKKDLEPD 1y8aA 195 :ESKGIDFPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=39801 # 1tca.308.91 read from T0547.t2k.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKK 1tca 92 :AGSG T0547 313 :LE 1tca 97 :NK T0547 316 :D 1tca 100 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=39804 # 1di2A.308.10 read from T0547.t2k.many.frag # found chain 1di2A in template set Warning: unaligning (T0547)K311 (1di2A)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 308 :EQK 1di2A 122 :VQK T0547 312 :DLEPD 1di2A 126 :WRLPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=39806 # 2cbiA.308.289 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 308 :EQKKDLEPD 2cbiA 320 :KAKGDVKPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=39807 # 1xp8A.308.194 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)E314 (1xp8A)G198 because T (delta_L) conformation "forbidden" or filtered. T0547 308 :EQKKDL 1xp8A 192 :AILSKT T0547 315 :PD 1xp8A 199 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=39809 # 1k8qA.308.139 read from T0547.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)K311 (1k8qA)G143 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1k8qA)H148 because P (beta_P) conformation "forbidden" or filtered. T0547 308 :EQK 1k8qA 140 :KKT T0547 312 :DL 1k8qA 144 :QD Number of specific fragments extracted= 2 number of extra gaps= 2 total=39811 # 2yhx.308.377 read from T0547.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)K311 (2yhx)G382 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2yhx)G386 because Y (epsilon') conformation "forbidden" or filtered. T0547 308 :EQK 2yhx 379 :QKK T0547 312 :DLE 2yhx 383 :YSS T0547 316 :D 2yhx 387 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=39814 # 1wdpA.308.282 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)K311 (1wdpA)L286 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1wdpA)G287 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1wdpA)V290 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1wdpA)K291 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQK 1wdpA 283 :KAF T0547 313 :LE 1wdpA 288 :CK Number of specific fragments extracted= 2 number of extra gaps= 2 total=39816 # 1i60A.308.129 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 308 :EQKKDLEPD 1i60A 130 :DIAEPYGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=39817 # 1xdzA.308.114 read from T0547.t2k.many.frag # found chain 1xdzA in training set Warning: unaligning (T0547)E314 (1xdzA)N120 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1xdzA)T121 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDL 1xdzA 114 :EALQLE T0547 316 :D 1xdzA 122 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=39819 # 1gwyA.308.21 read from T0547.t2k.many.frag # found chain 1gwyA in training set Warning: unaligning (T0547)K311 (1gwyA)G25 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1gwyA)R29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1gwyA)K30 because Y (epsilon') conformation "forbidden" or filtered. T0547 308 :EQK 1gwyA 22 :EEL T0547 312 :DLE 1gwyA 26 :KVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=39821 # 1zbsA.308.256 read from T0547.t2k.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)K310 (1zbsA)R259 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1zbsA)G260 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1zbsA)S265 because Y (epsilon') conformation "forbidden" or filtered. T0547 308 :EQ 1zbsA 257 :KK T0547 312 :DLEP 1zbsA 261 :LTLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=39823 # 1dljA.308.302 read from T0547.t2k.many.frag # found chain 1dljA in training set Warning: unaligning (T0547)K310 (1dljA)Q305 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1dljA)K310 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQ 1dljA 303 :KE T0547 311 :KDLE 1dljA 306 :ESPV T0547 316 :D 1dljA 311 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=39826 # 1fp2A.308.328 read from T0547.t2k.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)E314 (1fp2A)H335 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1fp2A)Y336 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDL 1fp2A 329 :IEAGFQ T0547 316 :D 1fp2A 337 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=39828 # 1fi4A.308.309 read from T0547.t2k.many.frag # found chain 1fi4A in template set Warning: unaligning (T0547)K311 (1fi4A)G293 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1fi4A)V297 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQK 1fi4A 290 :QFY T0547 312 :DLE 1fi4A 294 :ETI T0547 316 :D 1fi4A 298 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=39831 # 2b61A.308.147 read from T0547.t2k.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)K311 (2b61A)G132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2b61A)H135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2b61A)L136 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQK 2b61A 129 :EHL T0547 312 :DL 2b61A 133 :IS T0547 316 :D 2b61A 137 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=39834 # 1v7zA.308.138 read from T0547.t2k.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)K311 (1v7zA)G142 because L (left) conformation "forbidden" or filtered. T0547 308 :EQK 1v7zA 139 :RYA T0547 312 :DLEPD 1v7zA 143 :IQDFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=39836 # 1u14A.308.64 read from T0547.t2k.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)P315 (1u14A)F71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1u14A)W72 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 1u14A 64 :RLHPQAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=39837 # 1xd8A.308.169 read from T0547.t2k.many.frag # found chain 1xd8A in template set Warning: unaligning (T0547)L313 (1xd8A)G175 because Y (epsilon') conformation "forbidden" or filtered. T0547 308 :EQKKD 1xd8A 170 :KYANS T0547 314 :EPD 1xd8A 176 :SVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=39839 1ss9A expands to /projects/compbio/data/pdb/1ss9.pdb.gz 1ss9A:# 1ss9A.308.23 read from T0547.t2k.many.frag # adding 1ss9A to template set # found chain 1ss9A in template set Warning: unaligning (T0547)K310 (1ss9A)H26 because D (zeta) conformation "forbidden" or filtered. T0547 308 :EQ 1ss9A 24 :AA T0547 311 :KDLEPD 1ss9A 27 :PDTEIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=39841 # 1fiqB.308.49 read from T0547.t2k.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K311 (1fiqB)N272 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1fiqB)M277 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQK 1fiqB 269 :KFK T0547 312 :DLEP 1fiqB 273 :QLFP Number of specific fragments extracted= 2 number of extra gaps= 2 total=39843 # 1ylxA.308.24 read from T0547.t2k.many.frag # found chain 1ylxA in training set Warning: unaligning (T0547)K311 (1ylxA)G25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1ylxA)V29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1ylxA)G30 because Y (epsilon') conformation "forbidden" or filtered. T0547 308 :EQK 1ylxA 22 :EAY T0547 312 :DLE 1ylxA 26 :LDQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=39845 # 1jykA.308.66 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)K311 (1jykA)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1jykA)I51 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1jykA)I54 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQK 1jykA 47 :KEK T0547 313 :LE 1jykA 52 :ND T0547 316 :D 1jykA 55 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=39848 # 2a3nA.308.212 read from T0547.t2k.many.frag # found chain 2a3nA in training set Warning: unaligning (T0547)K310 (2a3nA)Y203 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2a3nA)Y208 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQ 2a3nA 201 :SR T0547 311 :KDLE 2a3nA 204 :HNSD T0547 316 :D 2a3nA 209 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=39851 # 1qsgA.308.177 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)E314 (1qsgA)G181 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1qsgA)V182 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDL 1qsgA 175 :NAMGPE T0547 316 :D 1qsgA 183 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=39853 # 1nnlA.308.166 read from T0547.t2k.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)K311 (1nnlA)H170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1nnlA)I174 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQK 1nnlA 167 :EKF T0547 312 :DLE 1nnlA 171 :FKK T0547 316 :D 1nnlA 175 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=39856 # 1m0dA.308.71 read from T0547.t2k.many.frag # found chain 1m0dA in template set Warning: unaligning (T0547)P315 (1m0dA)I90 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 1m0dA 83 :EQHPELD T0547 316 :D 1m0dA 91 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=39858 # 1yt8A.308.385 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)P315 (1yt8A)T393 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 1yt8A 386 :DWLGEPG T0547 316 :D 1yt8A 394 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=39860 # 1tjyA.308.208 read from T0547.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)E314 (1tjyA)N239 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tjyA)L240 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1tjyA)A241 because P (beta_P) conformation "forbidden" or filtered. T0547 308 :EQKKDL 1tjyA 233 :ENLKRN Number of specific fragments extracted= 1 number of extra gaps= 1 total=39861 # 1iirA.308.174 read from T0547.t2k.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)K311 (1iirA)G178 because L (left) conformation "forbidden" or filtered. T0547 308 :EQK 1iirA 175 :DAI T0547 312 :DLEPD 1iirA 179 :LPPVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=39863 # 1y8aA.309.217 read from T0547.t2k.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1y8aA)V203 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1y8aA 196 :SK T0547 312 :DLEP 1y8aA 199 :IDFP T0547 317 :I 1y8aA 204 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=39866 # 1xp8A.309.195 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)E314 (1xp8A)G198 because T (delta_L) conformation "forbidden" or filtered. T0547 309 :QKKDL 1xp8A 193 :ILSKT T0547 315 :PDI 1xp8A 199 :TAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=39868 # 1i60A.309.130 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 309 :QKKDLEPDI 1i60A 131 :IAEPYGVKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=39869 # 1tca.309.92 read from T0547.t2k.many.frag # found chain 1tca in training set Warning: unaligning (T0547)K311 (1tca)G95 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1tca)K98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1tca)P100 because P (beta_P) conformation "forbidden" or filtered. T0547 309 :QK 1tca 93 :GS T0547 313 :L 1tca 97 :N T0547 317 :I 1tca 101 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=39872 # 2yhx.309.378 read from T0547.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)P315 (2yhx)G386 because Y (epsilon') conformation "forbidden" or filtered. T0547 309 :QKKDLE 2yhx 380 :KKGYSS T0547 316 :DI 2yhx 387 :HI Number of specific fragments extracted= 2 number of extra gaps= 1 total=39874 # 1v7zA.309.139 read from T0547.t2k.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)K311 (1v7zA)G142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1v7zA)I143 because N (gamma') conformation "forbidden" or filtered. T0547 309 :QK 1v7zA 140 :YA T0547 313 :LEPDI 1v7zA 144 :QDFKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=39876 # 1k8qA.309.140 read from T0547.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)E314 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. T0547 309 :QKKDL 1k8qA 141 :KTGQD T0547 316 :DI 1k8qA 148 :HY Number of specific fragments extracted= 2 number of extra gaps= 1 total=39878 # 1wdpA.309.283 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)D312 (1wdpA)G287 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1wdpA)K289 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1wdpA)V290 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKK 1wdpA 284 :AFL T0547 313 :L 1wdpA 288 :C T0547 316 :DI 1wdpA 291 :KL Number of specific fragments extracted= 3 number of extra gaps= 2 total=39881 # 1dljA.309.303 read from T0547.t2k.many.frag # found chain 1dljA in training set Warning: unaligning (T0547)P315 (1dljA)K310 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKKDLE 1dljA 304 :EQESPV T0547 316 :DI 1dljA 311 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=39883 # 1xdzA.309.115 read from T0547.t2k.many.frag # found chain 1xdzA in training set Warning: unaligning (T0547)D312 (1xdzA)L118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1xdzA)N120 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1xdzA)T121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1xdzA)T122 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKK 1xdzA 115 :ALQ T0547 313 :L 1xdzA 119 :E T0547 317 :I 1xdzA 123 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=39886 1ptmA expands to /projects/compbio/data/pdb/1ptm.pdb.gz 1ptmA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ptmA.309.194 read from T0547.t2k.many.frag # adding 1ptmA to template set # found chain 1ptmA in template set Warning: unaligning (T0547)K311 (1ptmA)G197 because L (left) conformation "forbidden" or filtered. T0547 309 :QK 1ptmA 195 :KF T0547 312 :DLEPDI 1ptmA 198 :IAEPRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=39888 # 1tjyA.309.209 read from T0547.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)D312 (1tjyA)R237 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1tjyA)N239 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tjyA)L240 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKK 1tjyA 234 :NLK T0547 313 :L 1tjyA 238 :N T0547 316 :DI 1tjyA 241 :AI Number of specific fragments extracted= 3 number of extra gaps= 2 total=39891 # 1di2A.309.11 read from T0547.t2k.many.frag # found chain 1di2A in template set Warning: unaligning (T0547)K311 (1di2A)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 309 :QK 1di2A 123 :QK T0547 312 :DLEPDI 1di2A 126 :WRLPEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=39893 # 1jykA.309.67 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)K311 (1jykA)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1jykA)I54 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1jykA)I55 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1jykA 48 :EK T0547 312 :DLE 1jykA 51 :IND T0547 317 :I 1jykA 56 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=39896 # 1fiqB.309.50 read from T0547.t2k.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K311 (1fiqB)N272 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1fiqB)Q273 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1fiqB)F275 because D (zeta) conformation "forbidden" or filtered. T0547 309 :QK 1fiqB 270 :FK T0547 313 :L 1fiqB 274 :L T0547 315 :PDI 1fiqB 276 :PMI Number of specific fragments extracted= 3 number of extra gaps= 2 total=39899 # 1ss9A.309.24 read from T0547.t2k.many.frag # found chain 1ss9A in template set Warning: unaligning (T0547)D316 (1ss9A)R32 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKKDLEP 1ss9A 25 :AHPDTEI T0547 317 :I 1ss9A 33 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=39901 # 1yt8A.309.386 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)E314 (1yt8A)G392 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1yt8A)T393 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKKDL 1yt8A 387 :WLGEP T0547 316 :DI 1yt8A 394 :RV Number of specific fragments extracted= 2 number of extra gaps= 1 total=39903 # 1m0dA.309.72 read from T0547.t2k.many.frag # found chain 1m0dA in template set Warning: unaligning (T0547)P315 (1m0dA)I90 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKKDLE 1m0dA 84 :QHPELD T0547 316 :DI 1m0dA 91 :RI Number of specific fragments extracted= 2 number of extra gaps= 1 total=39905 # 1qwoA.309.125 read from T0547.t2k.many.frag # found chain 1qwoA in training set Warning: unaligning (T0547)D316 (1qwoA)F134 because P (beta_P) conformation "forbidden" or filtered. T0547 309 :QKKDLEP 1qwoA 127 :LARSVVP T0547 317 :I 1qwoA 135 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=39907 # 1u14A.309.65 read from T0547.t2k.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)P315 (1u14A)F71 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKKDLE 1u14A 65 :LHPQAD T0547 316 :DI 1u14A 72 :WV Number of specific fragments extracted= 2 number of extra gaps= 1 total=39909 # 1qsgA.309.178 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P315 (1qsgA)V182 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKKDLE 1qsgA 176 :AMGPEG T0547 316 :DI 1qsgA 183 :RV Number of specific fragments extracted= 2 number of extra gaps= 1 total=39911 # 1nzjA.309.206 read from T0547.t2k.many.frag # found chain 1nzjA in training set Warning: unaligning (T0547)K311 (1nzjA)G209 because L (left) conformation "forbidden" or filtered. T0547 309 :QK 1nzjA 207 :LF T0547 312 :DLEPDI 1nzjA 210 :WKVPDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=39913 # 1xd8A.309.170 read from T0547.t2k.many.frag # found chain 1xd8A in template set Warning: unaligning (T0547)L313 (1xd8A)G175 because Y (epsilon') conformation "forbidden" or filtered. T0547 309 :QKKD 1xd8A 171 :YANS T0547 314 :EPDI 1xd8A 176 :SVRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=39915 # 1fp2A.309.329 read from T0547.t2k.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)K311 (1fp2A)G332 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1fp2A)F333 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1fp2A)H335 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1fp2A)Y336 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1fp2A 330 :EA T0547 313 :L 1fp2A 334 :Q T0547 316 :DI 1fp2A 337 :KI Number of specific fragments extracted= 3 number of extra gaps= 2 total=39918 # 2b61A.309.148 read from T0547.t2k.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)K311 (2b61A)G132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2b61A)H135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2b61A)L136 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 2b61A 130 :HL T0547 312 :DL 2b61A 133 :IS T0547 316 :DI 2b61A 137 :KA Number of specific fragments extracted= 3 number of extra gaps= 2 total=39921 # 2cbiA.309.290 read from T0547.t2k.many.frag # found chain 2cbiA in template set Warning: unaligning (T0547)K311 (2cbiA)G323 because T (delta_L) conformation "forbidden" or filtered. T0547 309 :QK 2cbiA 321 :AK T0547 312 :DLEPDI 2cbiA 324 :DVKPLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=39923 # 2bhuA.309.296 read from T0547.t2k.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)L313 (2bhuA)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 309 :QKKD 2bhuA 297 :HELG T0547 314 :EPDI 2bhuA 302 :THLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=39925 # 1v33A.309.154 read from T0547.t2k.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)K311 (1v33A)G137 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1v33A)F138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1v33A)I141 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1v33A 135 :EL T0547 313 :LE 1v33A 139 :ND T0547 316 :DI 1v33A 142 :HI Number of specific fragments extracted= 3 number of extra gaps= 2 total=39928 # 1nnlA.309.167 read from T0547.t2k.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)K310 (1nnlA)F169 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1nnlA)H170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1nnlA)I174 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :Q 1nnlA 168 :K T0547 312 :DLE 1nnlA 171 :FKK T0547 316 :DI 1nnlA 175 :IM Number of specific fragments extracted= 3 number of extra gaps= 2 total=39931 # 1zbsA.309.257 read from T0547.t2k.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)K311 (1zbsA)G260 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1zbsA)S265 because Y (epsilon') conformation "forbidden" or filtered. T0547 309 :QK 1zbsA 258 :KR T0547 312 :DLEP 1zbsA 261 :LTLG T0547 317 :I 1zbsA 266 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=39934 # 1y8aA.310.218 read from T0547.t2k.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. T0547 310 :K 1y8aA 197 :K T0547 312 :DLEPDIF 1y8aA 199 :IDFPVVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=39936 # 1i60A.310.131 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 310 :KKDLEPDIF 1i60A 132 :AEPYGVKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=39937 # 2yhx.310.379 read from T0547.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)P315 (2yhx)G386 because Y (epsilon') conformation "forbidden" or filtered. T0547 310 :KKDLE 2yhx 381 :KGYSS T0547 316 :DIF 2yhx 387 :HIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=39939 # 1ptmA.310.195 read from T0547.t2k.many.frag # found chain 1ptmA in template set Warning: unaligning (T0547)K311 (1ptmA)G197 because L (left) conformation "forbidden" or filtered. T0547 310 :K 1ptmA 196 :F T0547 312 :DLEPDIF 1ptmA 198 :IAEPRIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=39941 # 1xp8A.310.196 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)D312 (1xp8A)K196 because D (zeta) conformation "forbidden" or filtered. T0547 310 :KK 1xp8A 194 :LS T0547 313 :LEPDIF 1xp8A 197 :TGTAAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=39943 # 1v7zA.310.140 read from T0547.t2k.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)K311 (1v7zA)G142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1v7zA)I143 because N (gamma') conformation "forbidden" or filtered. T0547 310 :K 1v7zA 141 :A T0547 313 :LEPDIF 1v7zA 144 :QDFKVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=39945 # 1yt8A.310.387 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)E314 (1yt8A)G392 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1yt8A)T393 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDL 1yt8A 388 :LGEP T0547 316 :DIF 1yt8A 394 :RVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=39947 # 1jykA.310.68 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)K311 (1jykA)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1jykA)I54 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1jykA)I55 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1jykA 49 :K T0547 312 :DLE 1jykA 51 :IND T0547 317 :IF 1jykA 56 :II Number of specific fragments extracted= 3 number of extra gaps= 2 total=39950 # 1u14A.310.66 read from T0547.t2k.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)P315 (1u14A)F71 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDLE 1u14A 66 :HPQAD T0547 316 :DIF 1u14A 72 :WVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=39952 # 1fiqB.310.51 read from T0547.t2k.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K311 (1fiqB)N272 because L (left) conformation "forbidden" or filtered. T0547 310 :K 1fiqB 271 :K T0547 312 :DLEPDIF 1fiqB 273 :QLFPMII Number of specific fragments extracted= 2 number of extra gaps= 1 total=39954 # 1tca.310.93 read from T0547.t2k.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KK 1tca 94 :SG T0547 313 :LE 1tca 97 :NK T0547 316 :DIF 1tca 100 :PVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=39957 # 1ss9A.310.25 read from T0547.t2k.many.frag # found chain 1ss9A in template set Warning: unaligning (T0547)K310 (1ss9A)H26 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1ss9A)R32 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLEP 1ss9A 27 :PDTEI T0547 317 :IF 1ss9A 33 :FH Number of specific fragments extracted= 2 number of extra gaps= 2 total=39959 # 1m0dA.310.73 read from T0547.t2k.many.frag # found chain 1m0dA in template set Warning: unaligning (T0547)E314 (1m0dA)D89 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1m0dA)I90 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDL 1m0dA 85 :HPEL T0547 316 :DIF 1m0dA 91 :RIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=39961 # 1k8qA.310.141 read from T0547.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)K311 (1k8qA)G143 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. T0547 310 :K 1k8qA 142 :T T0547 312 :DL 1k8qA 144 :QD T0547 316 :DIF 1k8qA 148 :HYV Number of specific fragments extracted= 3 number of extra gaps= 2 total=39964 # 1dljA.310.304 read from T0547.t2k.many.frag # found chain 1dljA in training set Warning: unaligning (T0547)P315 (1dljA)K310 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDLE 1dljA 305 :QESPV T0547 316 :DIF 1dljA 311 :VVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=39966 # 1qwoA.310.126 read from T0547.t2k.many.frag # found chain 1qwoA in training set T0547 310 :KKDLEPDIF 1qwoA 128 :ARSVVPFIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=39967 # 1wdpA.310.284 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)D312 (1wdpA)G287 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1wdpA)V290 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KK 1wdpA 285 :FL T0547 313 :LE 1wdpA 288 :CK T0547 316 :DIF 1wdpA 291 :KLA Number of specific fragments extracted= 3 number of extra gaps= 2 total=39970 # 1tjyA.310.210 read from T0547.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)K311 (1tjyA)K236 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1tjyA)R237 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1tjyA)N239 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tjyA)L240 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1tjyA 235 :L T0547 313 :L 1tjyA 238 :N T0547 316 :DIF 1tjyA 241 :AIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=39973 # 2bhuA.310.297 read from T0547.t2k.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)D312 (2bhuA)G300 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L313 (2bhuA)G301 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (2bhuA)L304 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KK 2bhuA 298 :EL T0547 314 :EP 2bhuA 302 :TH T0547 317 :IF 2bhuA 305 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=39976 # 1tuoA.310.321 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)P315 (1tuoA)C327 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDLE 1tuoA 322 :FLKGD T0547 316 :DIF 1tuoA 328 :FIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=39978 # 1xdzA.310.116 read from T0547.t2k.many.frag # found chain 1xdzA in training set Warning: unaligning (T0547)K311 (1xdzA)Q117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1xdzA)T121 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1xdzA 116 :L T0547 312 :DLE 1xdzA 118 :LEN T0547 316 :DIF 1xdzA 122 :TFC Number of specific fragments extracted= 3 number of extra gaps= 2 total=39981 # 1nnlA.310.168 read from T0547.t2k.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)K311 (1nnlA)H170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1nnlA)F171 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1nnlA)I174 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1nnlA 169 :F T0547 313 :LE 1nnlA 172 :KK T0547 316 :DIF 1nnlA 175 :IMI Number of specific fragments extracted= 3 number of extra gaps= 2 total=39984 # 1nv8A.310.237 read from T0547.t2k.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)E314 (1nv8A)G240 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1nv8A)K241 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDL 1nv8A 236 :YDTS T0547 316 :DIF 1nv8A 242 :IVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=39986 # 1njhA.310.18 read from T0547.t2k.many.frag # found chain 1njhA in training set Warning: unaligning (T0547)K311 (1njhA)A17 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1njhA)V21 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1njhA 16 :Y T0547 312 :DLE 1njhA 18 :DRP T0547 316 :DIF 1njhA 22 :YIH Number of specific fragments extracted= 3 number of extra gaps= 2 total=39989 # 1nzjA.310.207 read from T0547.t2k.many.frag # found chain 1nzjA in training set Warning: unaligning (T0547)K311 (1nzjA)G209 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1nzjA)W210 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1nzjA)V212 because P (beta_P) conformation "forbidden" or filtered. T0547 310 :K 1nzjA 208 :F T0547 313 :L 1nzjA 211 :K T0547 315 :PDIF 1nzjA 213 :PDYI Number of specific fragments extracted= 3 number of extra gaps= 2 total=39992 # 1jbwA.310.330 read from T0547.t2k.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)D312 (1jbwA)S333 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L313 (1jbwA)Q334 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1jbwA)I336 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KK 1jbwA 331 :LF T0547 314 :E 1jbwA 335 :P T0547 316 :DIF 1jbwA 337 :TVI Number of specific fragments extracted= 3 number of extra gaps= 2 total=39995 # 2af4C.310.196 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)D312 (2af4C)Q199 because L (left) conformation "forbidden" or filtered. T0547 310 :KK 2af4C 197 :LV T0547 313 :LEPDIF 2af4C 200 :DVPKVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=39997 # 1qsgA.310.179 read from T0547.t2k.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)E314 (1qsgA)G181 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1qsgA)V182 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F318 (1qsgA)N185 because Y (epsilon') conformation "forbidden" or filtered. T0547 310 :KKDL 1qsgA 177 :MGPE T0547 316 :DI 1qsgA 183 :RV Number of specific fragments extracted= 2 number of extra gaps= 2 total=39999 # 1gudA.310.128 read from T0547.t2k.many.frag # found chain 1gudA in training set Warning: unaligning (T0547)K311 (1gudA)G130 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1gudA)G134 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1gudA)E135 because P (beta_P) conformation "forbidden" or filtered. T0547 310 :K 1gudA 129 :L T0547 312 :DLE 1gudA 131 :AEG T0547 317 :IF 1gudA 136 :VA Number of specific fragments extracted= 3 number of extra gaps= 2 total=40002 # 2b61A.310.149 read from T0547.t2k.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)P315 (2b61A)L136 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDLE 2b61A 131 :LGISH T0547 316 :DIF 2b61A 137 :KAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=40004 # 1i60A.311.132 read from T0547.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)E314 (1i60A)G136 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1i60A)K138 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDL 1i60A 133 :EPY T0547 315 :P 1i60A 137 :V T0547 317 :IFI 1i60A 139 :IAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=40007 # 1y8aA.311.219 read from T0547.t2k.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1y8aA)F201 because D (zeta) conformation "forbidden" or filtered. T0547 312 :DL 1y8aA 199 :ID T0547 315 :PDIFI 1y8aA 202 :PVVVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=40009 # 1nv8A.311.238 read from T0547.t2k.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)P315 (1nv8A)K241 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 1nv8A 237 :DTSG T0547 316 :DIFI 1nv8A 242 :IVLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=40011 # 1fiqB.311.52 read from T0547.t2k.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K311 (1fiqB)N272 because L (left) conformation "forbidden" or filtered. T0547 312 :DLEPDIFI 1fiqB 273 :QLFPMIIC Number of specific fragments extracted= 1 number of extra gaps= 1 total=40012 # 2yhx.311.380 read from T0547.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)P315 (2yhx)G386 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (2yhx)H387 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 2yhx 382 :GYSS T0547 317 :IFI 2yhx 388 :IAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40014 # 1ptmA.311.196 read from T0547.t2k.many.frag # found chain 1ptmA in template set T0547 311 :KDLEPDIFI 1ptmA 197 :GIAEPRILV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40015 # 1xp8A.311.197 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)E314 (1xp8A)G198 because T (delta_L) conformation "forbidden" or filtered. T0547 311 :KDL 1xp8A 195 :SKT T0547 315 :PDIFI 1xp8A 199 :TAAIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=40017 # 1yt8A.311.388 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)E314 (1yt8A)G392 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1yt8A)T393 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1yt8A)R394 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDL 1yt8A 389 :GEP T0547 317 :IFI 1yt8A 395 :VLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=40019 # 1jykA.311.69 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)K311 (1jykA)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1jykA)I54 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1jykA 51 :IND T0547 316 :DIFI 1jykA 55 :IIIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=40021 # 1v7zA.311.141 read from T0547.t2k.many.frag # found chain 1v7zA in training set T0547 311 :KDLEPDIFI 1v7zA 142 :GIQDFKVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40022 # 1u14A.311.67 read from T0547.t2k.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)P315 (1u14A)F71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1u14A)W72 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 1u14A 67 :PQAD T0547 317 :IFI 1u14A 73 :VAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=40024 # 2bhuA.311.298 read from T0547.t2k.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)L313 (2bhuA)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 311 :KD 2bhuA 299 :LG T0547 314 :EPDIFI 2bhuA 302 :THLLLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40026 # 1zedA.311.301 read from T0547.t2k.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)E314 (1zedA)G305 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1zedA)F306 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDL 1zedA 302 :NPR T0547 316 :DIFI 1zedA 307 :FLFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40028 # 1yx1A.311.220 read from T0547.t2k.many.frag # found chain 1yx1A in training set Warning: unaligning (T0547)E314 (1yx1A)G222 because T (delta_L) conformation "forbidden" or filtered. T0547 311 :KDL 1yx1A 219 :FPE T0547 315 :PDIFI 1yx1A 223 :VARAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=40030 # 1qwoA.311.127 read from T0547.t2k.many.frag # found chain 1qwoA in training set T0547 311 :KDLEPDIFI 1qwoA 129 :RSVVPFIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=40031 # 1m0dA.311.74 read from T0547.t2k.many.frag # found chain 1m0dA in template set Warning: unaligning (T0547)E314 (1m0dA)D89 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1m0dA)I90 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDL 1m0dA 86 :PEL T0547 316 :DIFI 1m0dA 91 :RIVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=40033 # 2plc.311.248 read from T0547.t2k.many.frag # found chain 2plc in template set Warning: unaligning (T0547)L313 (2plc)G271 because L (left) conformation "forbidden" or filtered. T0547 311 :KD 2plc 269 :VR T0547 314 :EPDIFI 2plc 272 :LGILIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=40035 # 1dljA.311.305 read from T0547.t2k.many.frag # found chain 1dljA in training set Warning: unaligning (T0547)P315 (1dljA)K310 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 1dljA 306 :ESPV T0547 316 :DIFI 1dljA 311 :VVGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40037 # 1tjyA.311.211 read from T0547.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)E314 (1tjyA)N239 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tjyA)L240 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDL 1tjyA 236 :KRN T0547 316 :DIFI 1tjyA 241 :AIVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40039 # 1ss9A.311.26 read from T0547.t2k.many.frag # found chain 1ss9A in template set T0547 311 :KDLEPDIFI 1ss9A 27 :PDTEIRFHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40040 # 1jbwA.311.331 read from T0547.t2k.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)P315 (1jbwA)I336 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 1jbwA 332 :FSQP T0547 316 :DIFI 1jbwA 337 :TVIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40042 # 1tca.311.94 read from T0547.t2k.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :K 1tca 95 :G T0547 313 :LE 1tca 97 :NK T0547 316 :DIFI 1tca 100 :PVLT Number of specific fragments extracted= 3 number of extra gaps= 2 total=40045 # 1nnlA.311.169 read from T0547.t2k.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)D312 (1nnlA)F171 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1nnlA)I174 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I319 (1nnlA)G178 because Y (epsilon') conformation "forbidden" or filtered. T0547 311 :K 1nnlA 170 :H T0547 313 :LE 1nnlA 172 :KK T0547 316 :DIF 1nnlA 175 :IMI Number of specific fragments extracted= 3 number of extra gaps= 3 total=40048 # 1k8qA.311.142 read from T0547.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)E314 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. T0547 311 :KDL 1k8qA 143 :GQD T0547 316 :DIFI 1k8qA 148 :HYVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40050 # 1wdpA.311.285 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)D312 (1wdpA)G287 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1wdpA)V290 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :K 1wdpA 286 :L T0547 313 :LE 1wdpA 288 :CK T0547 316 :DIFI 1wdpA 291 :KLAI Number of specific fragments extracted= 3 number of extra gaps= 2 total=40053 # 2af4C.311.197 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)E314 (2af4C)V201 because P (beta_P) conformation "forbidden" or filtered. T0547 311 :KDL 2af4C 198 :VQD T0547 315 :PDIFI 2af4C 202 :PKVAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=40055 # 1e58A.311.172 read from T0547.t2k.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)L313 (1e58A)G175 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1e58A)V178 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KD 1e58A 173 :KS T0547 314 :EP 1e58A 176 :ER T0547 317 :IFI 1e58A 179 :IIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=40058 # 1jqlB.311.104 read from T0547.t2k.many.frag # found chain 1jqlB in template set T0547 311 :KDLEPDIFI 1jqlB 105 :HDDLLLIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=40059 # 1njhA.311.19 read from T0547.t2k.many.frag # found chain 1njhA in training set Warning: unaligning (T0547)P315 (1njhA)V21 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 1njhA 17 :ADRP T0547 316 :DIFI 1njhA 22 :YIHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=40061 # 1h1nA.311.156 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)K311 (1h1nA)G157 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1h1nA)Y162 because P (beta_P) conformation "forbidden" or filtered. T0547 312 :DLEP 1h1nA 158 :ATSQ T0547 317 :IFI 1h1nA 163 :IFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=40063 # 1i60A.312.133 read from T0547.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)E314 (1i60A)G136 because T (delta_L) conformation "forbidden" or filtered. T0547 312 :DL 1i60A 134 :PY T0547 315 :PDIFIE 1i60A 137 :VKIALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=40065 # 2bhuA.312.299 read from T0547.t2k.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)D312 (2bhuA)G300 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (2bhuA)E308 because N (gamma') conformation "forbidden" or filtered. T0547 313 :LEPDIFI 2bhuA 301 :GTHLLLA Number of specific fragments extracted= 1 number of extra gaps= 2 total=40066 # 1h1nA.312.157 read from T0547.t2k.many.frag # found chain 1h1nA in training set T0547 312 :DLEPDIFIE 1h1nA 158 :ATSQYIFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=40067 # 2yhx.312.381 read from T0547.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)E314 (2yhx)S385 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2yhx)G386 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X391 T0547 312 :DL 2yhx 383 :YS T0547 316 :DIFI 2yhx 387 :HIAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=40069 # 1y8aA.312.220 read from T0547.t2k.many.frag # found chain 1y8aA in training set T0547 312 :DLEPDIFIE 1y8aA 199 :IDFPVVVGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=40070 # 1zedA.312.302 read from T0547.t2k.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)E314 (1zedA)G305 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1zedA)F306 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DL 1zedA 303 :PR T0547 316 :DIFIE 1zedA 307 :FLFVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=40072 # 1fiqB.312.53 read from T0547.t2k.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)D312 (1fiqB)Q273 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1fiqB)F275 because D (zeta) conformation "forbidden" or filtered. T0547 313 :L 1fiqB 274 :L T0547 315 :PDIFIE 1fiqB 276 :PMIICP Number of specific fragments extracted= 2 number of extra gaps= 2 total=40074 # 1nv8A.312.239 read from T0547.t2k.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)E314 (1nv8A)G240 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1nv8A)K241 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1nv8A)E246 because P (beta_P) conformation "forbidden" or filtered. T0547 312 :DL 1nv8A 238 :TS T0547 316 :DIFI 1nv8A 242 :IVLM Number of specific fragments extracted= 2 number of extra gaps= 2 total=40076 # 7odcA.312.265 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E314 (7odcA)G268 because T (delta_L) conformation "forbidden" or filtered. T0547 312 :DL 7odcA 266 :DS T0547 315 :PDIFIE 7odcA 269 :VRIIAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=40078 # 2ab0A.312.63 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)L313 because of BadResidue code BAD_PEPTIDE in next template residue (2ab0A)E66 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE at template residue (2ab0A)E66 Warning: unaligning (T0547)P315 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 T0547 312 :D 2ab0A 64 :D T0547 316 :DIFIE 2ab0A 68 :DVIVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=40080 # 1yx1A.312.221 read from T0547.t2k.many.frag # found chain 1yx1A in training set T0547 312 :DLEPDIFIE 1yx1A 220 :PEGVARAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=40081 # 1ptmA.312.197 read from T0547.t2k.many.frag # found chain 1ptmA in template set Warning: unaligning (T0547)D316 (1ptmA)R202 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1ptmA)C206 because P (beta_P) conformation "forbidden" or filtered. T0547 312 :DLEP 1ptmA 198 :IAEP T0547 317 :IFI 1ptmA 203 :ILV Number of specific fragments extracted= 2 number of extra gaps= 2 total=40083 # 1zpdA.312.378 read from T0547.t2k.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)E320 (1zpdA)E387 because P (beta_P) conformation "forbidden" or filtered. T0547 312 :DLEPDIFI 1zpdA 379 :TPNTTVIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=40084 # 1u14A.312.68 read from T0547.t2k.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)P315 (1u14A)F71 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1u14A 68 :QAD T0547 316 :DIFIE 1u14A 72 :WVAIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=40086 # 1v7zA.312.142 read from T0547.t2k.many.frag # found chain 1v7zA in training set T0547 312 :DLEPDIFIE 1v7zA 143 :IQDFKVVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=40087 # 1qwoA.312.128 read from T0547.t2k.many.frag # found chain 1qwoA in training set T0547 312 :DLEPDIFIE 1qwoA 130 :SVVPFIRAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=40088 # 1yt8A.312.389 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)P315 (1yt8A)T393 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1yt8A 390 :EPG T0547 316 :DIFIE 1yt8A 394 :RVLDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=40090 # 1q6zA.312.366 read from T0547.t2k.many.frag # found chain 1q6zA in training set Warning: unaligning (T0547)D316 (1q6zA)I371 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLEP 1q6zA 367 :PENA T0547 317 :IFIE 1q6zA 372 :YLNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=40092 # 1xp8A.312.198 read from T0547.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)E314 (1xp8A)G198 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1xp8A)I204 because P (beta_P) conformation "forbidden" or filtered. T0547 312 :DL 1xp8A 196 :KT T0547 315 :PDIFI 1xp8A 199 :TAAIF Number of specific fragments extracted= 2 number of extra gaps= 2 total=40094 # 2af4C.312.198 read from T0547.t2k.many.frag # found chain 2af4C in template set T0547 312 :DLEPDIFIE 2af4C 199 :QDVPKVAML Number of specific fragments extracted= 1 number of extra gaps= 0 total=40095 # 1knwA.312.259 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P315 (1knwA)V263 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1knwA 260 :GHP T0547 316 :DIFIE 1knwA 264 :KLEIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=40097 # 1dljA.312.306 read from T0547.t2k.many.frag # found chain 1dljA in training set Warning: unaligning (T0547)P315 (1dljA)K310 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1dljA 307 :SPV T0547 316 :DIFIE 1dljA 311 :VVGVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=40099 # 1jbwA.312.332 read from T0547.t2k.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)L313 (1jbwA)Q334 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1jbwA)I336 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1jbwA)T337 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :D 1jbwA 333 :S T0547 314 :E 1jbwA 335 :P T0547 317 :IFIE 1jbwA 338 :VIAG Number of specific fragments extracted= 3 number of extra gaps= 2 total=40102 # 1jykA.312.70 read from T0547.t2k.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)P315 (1jykA)I54 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1jykA 51 :IND T0547 316 :DIFIE 1jykA 55 :IIIVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40104 # 1tuoA.312.323 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)L313 (1tuoA)G325 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tuoA)C327 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1tuoA)E332 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :D 1tuoA 324 :K T0547 314 :E 1tuoA 326 :D T0547 316 :DIFI 1tuoA 328 :FIGG Number of specific fragments extracted= 3 number of extra gaps= 3 total=40107 # 1muwA.312.171 read from T0547.t2k.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)L313 because of BadResidue code BAD_PEPTIDE in next template residue (1muwA)D174 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)D174 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)I175 T0547 312 :D 1muwA 172 :G T0547 316 :DIFIE 1muwA 176 :RFAIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=40109 # 1xv5A.312.224 read from T0547.t2k.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)E314 (1xv5A)G1226 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1xv5A)S1228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1xv5A)E1232 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DL 1xv5A 1224 :PA T0547 315 :P 1xv5A 1227 :K T0547 317 :IFI 1xv5A 1229 :TVM Number of specific fragments extracted= 3 number of extra gaps= 3 total=40112 # 1e58A.312.173 read from T0547.t2k.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)L313 (1e58A)G175 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1e58A)A182 because Y (epsilon') conformation "forbidden" or filtered. T0547 312 :D 1e58A 174 :S T0547 314 :EPDIFI 1e58A 176 :ERVIIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=40114 # 1wdpA.312.286 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)D312 (1wdpA)G287 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1wdpA)V290 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1wdpA)K291 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1wdpA 288 :CK T0547 317 :IFIE 1wdpA 292 :LAIK Number of specific fragments extracted= 2 number of extra gaps= 2 total=40116 # 1twdA.312.167 read from T0547.t2k.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)E320 (1twdA)G176 because Y (epsilon') conformation "forbidden" or filtered. T0547 312 :DLEPDIFI 1twdA 168 :RDAPIIMA Number of specific fragments extracted= 1 number of extra gaps= 1 total=40117 # 1i60A.313.134 read from T0547.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)E314 (1i60A)G136 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1i60A)E142 because N (gamma') conformation "forbidden" or filtered. T0547 313 :L 1i60A 135 :Y T0547 315 :PDIFI 1i60A 137 :VKIAL T0547 321 :S 1i60A 143 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=40120 # 7odcA.313.266 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E314 (7odcA)G268 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (7odcA)E274 because D (zeta) conformation "forbidden" or filtered. T0547 313 :L 7odcA 267 :S T0547 315 :PDIFI 7odcA 269 :VRIIA T0547 321 :S 7odcA 275 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=40123 # 2bhuA.313.300 read from T0547.t2k.many.frag # found chain 2bhuA in training set T0547 313 :LEPDIFIES 2bhuA 301 :GTHLLLAED Number of specific fragments extracted= 1 number of extra gaps= 0 total=40124 # 1h1nA.313.158 read from T0547.t2k.many.frag # found chain 1h1nA in training set T0547 313 :LEPDIFIES 1h1nA 159 :TSQYIFVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=40125 # 1zedA.313.303 read from T0547.t2k.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)E314 (1zedA)G305 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1zedA)F306 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :L 1zedA 304 :R T0547 316 :DIFIES 1zedA 307 :FLFVEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40127 # 2ab0A.313.64 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)L313 because of BadResidue code BAD_PEPTIDE in next template residue (2ab0A)E66 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE at template residue (2ab0A)E66 Warning: unaligning (T0547)P315 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 T0547 316 :DIFIES 2ab0A 68 :DVIVLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=40128 # 2yhx.313.382 read from T0547.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)P315 (2yhx)G386 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X391 Warning: unaligning (T0547)S321 (2yhx)G392 because S (epsilon) conformation "forbidden" or filtered. T0547 313 :LE 2yhx 384 :SS T0547 316 :DIFI 2yhx 387 :HIAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=40130 # 1knwA.313.260 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E314 (1knwA)P262 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1knwA)V263 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1knwA)P269 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :L 1knwA 261 :H T0547 316 :DIFIE 1knwA 264 :KLEIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=40132 # 1zpdA.313.379 read from T0547.t2k.many.frag # found chain 1zpdA in template set T0547 313 :LEPDIFIES 1zpdA 380 :PNTTVIAET Number of specific fragments extracted= 1 number of extra gaps= 0 total=40133 # 1yx1A.313.222 read from T0547.t2k.many.frag # found chain 1yx1A in training set Warning: unaligning (T0547)S321 (1yx1A)Y229 because Y (epsilon') conformation "forbidden" or filtered. T0547 313 :LEPDIFIE 1yx1A 221 :EGVARAIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=40134 # 1nv8A.313.240 read from T0547.t2k.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)P315 (1nv8A)K241 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1nv8A 239 :SG T0547 316 :DIFIES 1nv8A 242 :IVLMEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=40136 # 1y8aA.313.221 read from T0547.t2k.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)E314 (1y8aA)F201 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1y8aA)S208 because Y (epsilon') conformation "forbidden" or filtered. T0547 313 :L 1y8aA 200 :D T0547 315 :PDIFIE 1y8aA 202 :PVVVGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=40138 # 1yt8A.313.390 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)P315 (1yt8A)T393 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1yt8A 391 :PG T0547 316 :DIFIES 1yt8A 394 :RVLDFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=40140 # 1ptmA.313.198 read from T0547.t2k.many.frag # found chain 1ptmA in template set Warning: unaligning (T0547)E314 (1ptmA)E200 because D (zeta) conformation "forbidden" or filtered. T0547 313 :L 1ptmA 199 :A T0547 315 :PDIFIES 1ptmA 201 :PRILVCG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40142 1qexA expands to /projects/compbio/data/pdb/1qex.pdb.gz 1qexA:# 1qexA.313.91 read from T0547.t2k.many.frag # adding 1qexA to template set # found chain 1qexA in template set Warning: unaligning (T0547)L313 (1qexA)V92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1qexA)V94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1qexA)E99 because P (beta_P) conformation "forbidden" or filtered. T0547 314 :E 1qexA 93 :G T0547 316 :DIFI 1qexA 95 :KVII T0547 321 :S 1qexA 100 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=40145 # 2af4C.313.199 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)E314 (2af4C)V201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (2af4C)K203 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (2af4C)L207 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :L 2af4C 200 :D T0547 315 :P 2af4C 202 :P T0547 317 :IFI 2af4C 204 :VAM T0547 321 :S 2af4C 208 :S Number of specific fragments extracted= 4 number of extra gaps= 3 total=40149 # 1qwoA.313.129 read from T0547.t2k.many.frag # found chain 1qwoA in training set T0547 313 :LEPDIFIES 1qwoA 131 :VVPFIRASG Number of specific fragments extracted= 1 number of extra gaps= 0 total=40150 # 1fiqB.313.54 read from T0547.t2k.many.frag # found chain 1fiqB in template set T0547 313 :LEPDIFIES 1fiqB 274 :LFPMIICPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=40151 # 1muwA.313.172 read from T0547.t2k.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)L313 because of BadResidue code BAD_PEPTIDE in next template residue (1muwA)D174 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)D174 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)I175 T0547 316 :DIFIES 1muwA 176 :RFAIEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=40152 # 1u14A.313.69 read from T0547.t2k.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)P315 (1u14A)F71 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1u14A 69 :AD T0547 316 :DIFIES 1u14A 72 :WVAIEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40154 # 1jbwA.313.333 read from T0547.t2k.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)P315 (1jbwA)I336 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1jbwA 334 :QP T0547 316 :DIFIES 1jbwA 337 :TVIAGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=40156 # 1v7zA.313.143 read from T0547.t2k.many.frag # found chain 1v7zA in training set T0547 313 :LEPDIFIES 1v7zA 144 :QDFKVVVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=40157 # 1j79A.313.168 read from T0547.t2k.many.frag # found chain 1j79A in training set Warning: unaligning (T0547)S321 (1j79A)H177 because L (left) conformation "forbidden" or filtered. T0547 313 :LEPDIFIE 1j79A 169 :TALKVVFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=40158 # 1twdA.313.168 read from T0547.t2k.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)L313 (1twdA)D169 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1twdA)I172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1twdA)G176 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1twdA)A177 because L (left) conformation "forbidden" or filtered. T0547 314 :EP 1twdA 170 :AP T0547 317 :IFI 1twdA 173 :IMA Number of specific fragments extracted= 2 number of extra gaps= 3 total=40160 # 1q6zA.313.367 read from T0547.t2k.many.frag # found chain 1q6zA in training set Warning: unaligning (T0547)S321 because of BadResidue code BAD_PEPTIDE in next template residue (1q6zA)T377 T0547 313 :LEPDIFIE 1q6zA 368 :ENAIYLNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=40161 # 1qnrA.313.157 read from T0547.t2k.many.frag # found chain 1qnrA in training set Warning: unaligning (T0547)P315 (1qnrA)A160 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F318 (1qnrA)A163 because Y (epsilon') conformation "forbidden" or filtered. T0547 313 :LE 1qnrA 158 :ST T0547 316 :DI 1qnrA 161 :IF T0547 319 :IES 1qnrA 164 :WEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=40164 # 1qtwA.313.137 read from T0547.t2k.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)P315 (1qtwA)V140 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1qtwA)N146 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :LE 1qtwA 138 :QG T0547 316 :DIFIE 1qtwA 141 :TAVIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=40166 2akoA expands to /projects/compbio/data/pdb/2ako.pdb.gz 2akoA:Skipped atom 70, because occupancy 0.500 <= existing 0.500 in 2akoA Skipped atom 72, because occupancy 0.500 <= existing 0.500 in 2akoA Skipped atom 74, because occupancy 0.500 <= existing 0.500 in 2akoA Skipped atom 76, because occupancy 0.500 <= existing 0.500 in 2akoA Skipped atom 78, because occupancy 0.500 <= existing 0.500 in 2akoA Skipped atom 80, because occupancy 0.500 <= existing 0.500 in 2akoA Skipped atom 82, because occupancy 0.500 <= existing 0.500 in 2akoA Skipped atom 84, because occupancy 0.500 <= existing 0.500 in 2akoA Skipped atom 86, because occupancy 0.500 <= existing 0.500 in 2akoA Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 2akoA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2akoA.313.120 read from T0547.t2k.many.frag # adding 2akoA to template set # found chain 2akoA in template set Warning: unaligning (T0547)L313 (2akoA)G121 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (2akoA)P124 because P (beta_P) conformation "forbidden" or filtered. T0547 314 :EP 2akoA 122 :IL T0547 317 :IFIES 2akoA 125 :IINEN Number of specific fragments extracted= 2 number of extra gaps= 2 total=40168 1ka9H expands to /projects/compbio/data/pdb/1ka9.pdb.gz 1ka9H:# 1ka9H.313.38 read from T0547.t2k.many.frag # adding 1ka9H to template set # found chain 1ka9H in template set Warning: unaligning (T0547)S321 (1ka9H)P47 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :LEPDIFIE 1ka9H 39 :EEADLLVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=40169 # 2ex0A.313.277 read from T0547.t2k.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)E320 (2ex0A)K309 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (2ex0A)G310 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :LEPDIFI 2ex0A 302 :DHYKIYF Number of specific fragments extracted= 1 number of extra gaps= 1 total=40170 # 7odcA.314.267 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E314 (7odcA)G268 because T (delta_L) conformation "forbidden" or filtered. T0547 315 :PDIFIESG 7odcA 269 :VRIIAEPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=40171 # 2bhuA.314.301 read from T0547.t2k.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)E320 (2bhuA)E308 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (2bhuA)H310 because G (3-10) conformation "forbidden" or filtered. T0547 314 :EPDIFI 2bhuA 302 :THLLLA T0547 321 :S 2bhuA 309 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=40173 # 1i60A.314.135 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 314 :EPDIFIESG 1i60A 136 :GVKIALEFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40174 # 1knwA.314.261 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E314 (1knwA)P262 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1knwA)V263 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIESG 1knwA 264 :KLEIEPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=40175 # 1zedA.314.304 read from T0547.t2k.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)P315 (1zedA)F306 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1zedA)G313 because H (helix) conformation "forbidden" or filtered. T0547 314 :E 1zedA 305 :G T0547 316 :DIFIES 1zedA 307 :FLFVEG Number of specific fragments extracted= 2 number of extra gaps= 2 total=40177 # 2ab0A.314.65 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE at template residue (2ab0A)E66 Warning: unaligning (T0547)P315 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 T0547 316 :DIFIESG 2ab0A 68 :DVIVLPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=40178 # 1zpdA.314.380 read from T0547.t2k.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)D316 (1zpdA)T383 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1zpdA)G389 because Y (epsilon') conformation "forbidden" or filtered. T0547 314 :EP 1zpdA 381 :NT T0547 317 :IFIES 1zpdA 384 :VIAET Number of specific fragments extracted= 2 number of extra gaps= 2 total=40180 # 1h1nA.314.159 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)E320 (1h1nA)E166 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1h1nA)N168 because P (beta_P) conformation "forbidden" or filtered. T0547 314 :EPDIFI 1h1nA 160 :SQYIFV T0547 321 :S 1h1nA 167 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=40182 # 2yhx.314.383 read from T0547.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)E314 (2yhx)S385 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2yhx)G386 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X391 Warning: unaligning (T0547)S321 (2yhx)G392 because S (epsilon) conformation "forbidden" or filtered. T0547 316 :DIFI 2yhx 387 :HIAA T0547 322 :G 2yhx 393 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=40184 # 1qnrA.314.158 read from T0547.t2k.many.frag # found chain 1qnrA in training set Warning: unaligning (T0547)P315 (1qnrA)A160 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1qnrA)G167 because Y (epsilon') conformation "forbidden" or filtered. T0547 314 :E 1qnrA 159 :T T0547 316 :DIFIES 1qnrA 161 :IFAWEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=40186 # 1qexA.314.92 read from T0547.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0547)P315 (1qexA)V94 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1qexA 93 :G T0547 316 :DIFIESG 1qexA 95 :KVIIERG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40188 # 1nv8A.314.241 read from T0547.t2k.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)E314 (1nv8A)G240 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1nv8A)K241 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1nv8A)I242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1nv8A)E249 T0547 317 :IFIES 1nv8A 243 :VLMEI Number of specific fragments extracted= 1 number of extra gaps= 2 total=40189 # 1u14A.314.70 read from T0547.t2k.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)P315 (1u14A)F71 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1u14A 70 :D T0547 316 :DIFIESG 1u14A 72 :WVAIEAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40191 # 1muwA.314.173 read from T0547.t2k.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)D174 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)I175 Warning: unaligning (T0547)G322 (1muwA)K182 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIES 1muwA 176 :RFAIEP Number of specific fragments extracted= 1 number of extra gaps= 2 total=40192 # 1zhaA.314.146 read from T0547.t2k.many.frag # found chain 1zhaA in template set Warning: unaligning (T0547)P315 (1zhaA)E1148 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1zhaA)R1154 because G (3-10) conformation "forbidden" or filtered. T0547 314 :E 1zhaA 1147 :K T0547 316 :DIFIE 1zhaA 1149 :IYLTE T0547 322 :G 1zhaA 1155 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=40195 # 2akoA.314.121 read from T0547.t2k.many.frag # found chain 2akoA in template set Warning: unaligning (T0547)E314 (2akoA)I122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (2akoA)P124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (2akoA)E128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (2akoA)D130 because G (3-10) conformation "forbidden" or filtered. T0547 315 :P 2akoA 123 :L T0547 317 :IFI 2akoA 125 :IIN T0547 321 :S 2akoA 129 :N Number of specific fragments extracted= 3 number of extra gaps= 4 total=40198 # 1tuoA.314.325 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)P315 (1tuoA)C327 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1tuoA 326 :D T0547 316 :DIFIESG 1tuoA 328 :FIGGEES Number of specific fragments extracted= 2 number of extra gaps= 1 total=40200 # 1yt8A.314.391 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)P315 (1yt8A)T393 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1yt8A)A400 because P (beta_P) conformation "forbidden" or filtered. T0547 314 :E 1yt8A 392 :G T0547 316 :DIFIES 1yt8A 394 :RVLDFT Number of specific fragments extracted= 2 number of extra gaps= 2 total=40202 # 1q2lA.314.718 read from T0547.t2k.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)P315 (1q2lA)Q743 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1q2lA 742 :K T0547 316 :DIFIESG 1q2lA 744 :SVIFEKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40204 # 1zz1A.314.302 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)P315 (1zz1A)I304 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1zz1A)V305 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1zz1A)G311 because S (epsilon) conformation "forbidden" or filtered. T0547 314 :E 1zz1A 303 :R T0547 317 :IFIES 1zz1A 306 :FVQEG Number of specific fragments extracted= 2 number of extra gaps= 2 total=40206 # 1w5qA.314.195 read from T0547.t2k.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)E320 (1w5qA)Y202 because N (gamma') conformation "forbidden" or filtered. T0547 314 :EPDIFI 1w5qA 196 :NVRVMA T0547 321 :SG 1w5qA 203 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40208 # 1qtwA.314.138 read from T0547.t2k.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)E314 (1qtwA)G139 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1qtwA)V140 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1qtwA)T147 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIES 1qtwA 141 :TAVIEN Number of specific fragments extracted= 1 number of extra gaps= 2 total=40209 # 1ptmA.314.199 read from T0547.t2k.many.frag # found chain 1ptmA in template set Warning: unaligning (T0547)E314 (1ptmA)E200 because D (zeta) conformation "forbidden" or filtered. T0547 315 :PDIFIESG 1ptmA 201 :PRILVCGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=40210 # 2a14A.314.54 read from T0547.t2k.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P315 (2a14A)G56 because Y (epsilon') conformation "forbidden" or filtered. T0547 314 :E 2a14A 55 :Q T0547 316 :DIFIESG 2a14A 57 :DTLIDIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40212 # 1fiqB.314.55 read from T0547.t2k.many.frag # found chain 1fiqB in template set T0547 314 :EPDIFIESG 1fiqB 275 :FPMIICPAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=40213 # 1ka9H.314.39 read from T0547.t2k.many.frag # found chain 1ka9H in template set Warning: unaligning (T0547)G322 (1ka9H)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 314 :EPDIFIES 1ka9H 40 :EADLLVLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=40214 1bc5A expands to /projects/compbio/data/pdb/1bc5.pdb.gz 1bc5A:# 1bc5A.314.100 read from T0547.t2k.many.frag # adding 1bc5A to template set # found chain 1bc5A in template set T0547 314 :EPDIFIESG 1bc5A 116 :EYRVWSAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=40215 # 1j79A.314.169 read from T0547.t2k.many.frag # found chain 1j79A in training set Warning: unaligning (T0547)D316 (1j79A)K172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1j79A)H177 because L (left) conformation "forbidden" or filtered. T0547 314 :EP 1j79A 170 :AL T0547 317 :IFIE 1j79A 173 :VVFE T0547 322 :G 1j79A 178 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=40218 # 1jbwA.314.334 read from T0547.t2k.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)P315 (1jbwA)I336 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1jbwA)L343 because G (3-10) conformation "forbidden" or filtered. T0547 314 :E 1jbwA 335 :P T0547 316 :DIFIES 1jbwA 337 :TVIAGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=40220 # 2af4C.314.200 read from T0547.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)E320 (2af4C)L207 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (2af4C)Y209 because G (3-10) conformation "forbidden" or filtered. T0547 314 :EPDIFI 2af4C 201 :VPKVAM T0547 321 :S 2af4C 208 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=40222 # 7odcA.315.268 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 315 :PDIFIESGR 7odcA 269 :VRIIAEPGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=40223 # 1knwA.315.262 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P315 (1knwA)V263 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1knwA 264 :KLEIEPGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=40224 # 1zedA.315.305 read from T0547.t2k.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)P315 (1zedA)F306 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1zedA 307 :FLFVEGGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=40225 # 2bhuA.315.302 read from T0547.t2k.many.frag # found chain 2bhuA in training set T0547 315 :PDIFIESGR 2bhuA 303 :HLLLAEDHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=40226 # 2ab0A.315.66 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)P315 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 Warning: unaligning (T0547)E320 (2ab0A)L72 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (2ab0A)G75 because S (epsilon) conformation "forbidden" or filtered. T0547 316 :DIFI 2ab0A 68 :DVIV T0547 321 :SG 2ab0A 73 :PG Number of specific fragments extracted= 2 number of extra gaps= 3 total=40228 # 1qexA.315.93 read from T0547.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0547)P315 (1qexA)V94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1qexA)G101 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIES 1qexA 95 :KVIIER T0547 323 :R 1qexA 102 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=40230 # 1i60A.315.136 read from T0547.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)E320 (1i60A)E142 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1i60A)V144 because E (beta_S) conformation "forbidden" or filtered. T0547 315 :PDIFI 1i60A 137 :VKIAL T0547 321 :S 1i60A 143 :F T0547 323 :R 1i60A 145 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=40233 # 1zpdA.315.381 read from T0547.t2k.many.frag # found chain 1zpdA in template set T0547 315 :PDIFIESGR 1zpdA 382 :TTVIAETGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=40234 # 1h1nA.315.160 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)G322 (1h1nA)N168 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1h1nA)S169 because L (left) conformation "forbidden" or filtered. T0547 315 :PDIFIES 1h1nA 161 :QYIFVEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=40235 # 1qnrA.315.159 read from T0547.t2k.many.frag # found chain 1qnrA in training set Warning: unaligning (T0547)P315 (1qnrA)A160 because G (3-10) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1qnrA 161 :IFAWELGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=40236 # 1nv8A.315.242 read from T0547.t2k.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)P315 (1nv8A)K241 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1nv8A)E249 Warning: unaligning (T0547)R323 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1nv8A)E249 T0547 316 :DIFIES 1nv8A 242 :IVLMEI Number of specific fragments extracted= 1 number of extra gaps= 2 total=40237 # 2yhx.315.384 read from T0547.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)P315 (2yhx)G386 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X391 Warning: unaligning (T0547)R323 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X394 T0547 316 :DIFI 2yhx 387 :HIAA T0547 321 :SG 2yhx 392 :GS Number of specific fragments extracted= 2 number of extra gaps= 3 total=40239 # 1muwA.315.174 read from T0547.t2k.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)I175 Warning: unaligning (T0547)E320 (1muwA)E180 because N (gamma') conformation "forbidden" or filtered. T0547 316 :DIFI 1muwA 176 :RFAI T0547 321 :SGR 1muwA 181 :PKP Number of specific fragments extracted= 2 number of extra gaps= 2 total=40241 # 1zhaA.315.147 read from T0547.t2k.many.frag # found chain 1zhaA in template set Warning: unaligning (T0547)P315 (1zhaA)E1148 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1zhaA)G1155 because S (epsilon) conformation "forbidden" or filtered. T0547 316 :DIFIES 1zhaA 1149 :IYLTER T0547 323 :R 1zhaA 1156 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=40243 # 1uasA.315.157 read from T0547.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)S321 (1uasA)W164 because L (left) conformation "forbidden" or filtered. T0547 315 :PDIFIE 1uasA 158 :FFSLCE T0547 322 :GR 1uasA 165 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=40245 # 1zz1A.315.303 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)P315 (1zz1A)I304 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1zz1A 305 :VFVQEGGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=40246 # 1tuoA.315.326 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)P315 (1tuoA)C327 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I319 (1tuoA)G331 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1tuoA)G335 because T (delta_L) conformation "forbidden" or filtered. T0547 316 :DIF 1tuoA 328 :FIG T0547 320 :ESG 1tuoA 332 :EES Number of specific fragments extracted= 2 number of extra gaps= 3 total=40248 # 1ka9H.315.40 read from T0547.t2k.many.frag # found chain 1ka9H in template set T0547 315 :PDIFIESGR 1ka9H 41 :ADLLVLPGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=40249 # 1qtwA.315.139 read from T0547.t2k.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)P315 (1qtwA)V140 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1qtwA)N146 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1qtwA)T147 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIE 1qtwA 141 :TAVIE T0547 323 :R 1qtwA 148 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=40251 # 1u14A.315.71 read from T0547.t2k.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)P315 (1u14A)F71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1u14A)W72 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1u14A)E76 because E (beta_S) conformation "forbidden" or filtered. T0547 317 :IFI 1u14A 73 :VAI T0547 321 :SGR 1u14A 77 :AGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=40253 # 2a14A.315.55 read from T0547.t2k.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P315 (2a14A)G56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (2a14A)D61 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :DIFI 2a14A 57 :DTLI T0547 321 :SGR 2a14A 62 :IGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=40255 # 1j79A.315.170 read from T0547.t2k.many.frag # found chain 1j79A in training set Warning: unaligning (T0547)S321 (1j79A)H177 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1j79A)I178 because P (beta_P) conformation "forbidden" or filtered. T0547 315 :PDIFIE 1j79A 171 :LKVVFE T0547 323 :R 1j79A 179 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=40257 # 2akoA.315.122 read from T0547.t2k.many.frag # found chain 2akoA in template set Warning: unaligning (T0547)E320 (2akoA)E128 because P (beta_P) conformation "forbidden" or filtered. T0547 315 :PDIFI 2akoA 123 :LPIIN T0547 321 :SGR 2akoA 129 :NDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40259 # 1q2lA.315.719 read from T0547.t2k.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)P315 (1q2lA)Q743 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1q2lA)A750 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1q2lA)G751 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :DIFIES 1q2lA 744 :SVIFEK Number of specific fragments extracted= 1 number of extra gaps= 2 total=40260 # 1pjhA.315.113 read from T0547.t2k.many.frag # found chain 1pjhA in template set T0547 315 :PDIFIESGR 1pjhA 114 :VLICCLNGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=40261 # 1xw8A.315.133 read from T0547.t2k.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)R323 (1xw8A)S142 because P (beta_P) conformation "forbidden" or filtered. T0547 315 :PDIFIESG 1xw8A 134 :LILVGLAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=40262 # 1tca.315.98 read from T0547.t2k.many.frag # found chain 1tca in training set Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1tca)S105 because S (epsilon) conformation "forbidden" or filtered. T0547 316 :DIFIE 1tca 100 :PVLTW T0547 322 :GR 1tca 106 :QG Number of specific fragments extracted= 2 number of extra gaps= 2 total=40264 # 1xv5A.315.227 read from T0547.t2k.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)D316 (1xv5A)S1228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1xv5A)L1234 because N (gamma') conformation "forbidden" or filtered. T0547 315 :P 1xv5A 1227 :K T0547 317 :IFIES 1xv5A 1229 :TVMEG T0547 323 :R 1xv5A 1235 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=40267 # 1mla.315.268 read from T0547.t2k.many.frag # found chain 1mla in training set T0547 315 :PDIFIESGR 1mla 269 :VEHLYEVGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=40268 # 1p3dA.315.368 read from T0547.t2k.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)P315 (1p3dA)I369 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1p3dA)P375 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :DIFIE 1p3dA 370 :VMIFQ T0547 322 :GR 1p3dA 376 :HR Number of specific fragments extracted= 2 number of extra gaps= 2 total=40270 # 7odcA.316.269 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I319 (7odcA)A273 because Y (epsilon') conformation "forbidden" or filtered. T0547 316 :DIF 7odcA 270 :RII T0547 320 :ESGRF 7odcA 274 :EPGRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=40272 # 1knwA.316.263 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E320 (1knwA)E268 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1knwA)G270 because H (helix) conformation "forbidden" or filtered. T0547 316 :DIFI 1knwA 264 :KLEI T0547 321 :S 1knwA 269 :P T0547 323 :RF 1knwA 271 :RF Number of specific fragments extracted= 3 number of extra gaps= 2 total=40275 # 1zedA.316.306 read from T0547.t2k.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)E320 (1zedA)E311 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1zedA)R314 because G (3-10) conformation "forbidden" or filtered. T0547 316 :DIFI 1zedA 307 :FLFV T0547 321 :SG 1zedA 312 :GG T0547 324 :F 1zedA 315 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=40278 # 2bhuA.316.303 read from T0547.t2k.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)F324 (2bhuA)N312 because L (left) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 2bhuA 304 :LLLAEDHR Number of specific fragments extracted= 1 number of extra gaps= 1 total=40279 # 1zpdA.316.382 read from T0547.t2k.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)E320 (1zpdA)E387 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1zpdA)G389 because Y (epsilon') conformation "forbidden" or filtered. T0547 316 :DIFI 1zpdA 383 :TVIA T0547 321 :S 1zpdA 388 :T T0547 323 :RF 1zpdA 390 :DS Number of specific fragments extracted= 3 number of extra gaps= 2 total=40282 # 2ab0A.316.67 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)S321 (2ab0A)P73 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (2ab0A)G75 because S (epsilon) conformation "forbidden" or filtered. T0547 316 :DIFIE 2ab0A 68 :DVIVL T0547 322 :G 2ab0A 74 :G T0547 324 :F 2ab0A 76 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=40285 # 1qexA.316.94 read from T0547.t2k.many.frag # found chain 1qexA in template set T0547 316 :DIFIESGRF 1qexA 95 :KVIIERGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=40286 # 1i60A.316.137 read from T0547.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)E320 (1i60A)E142 because N (gamma') conformation "forbidden" or filtered. T0547 316 :DIFI 1i60A 138 :KIAL T0547 321 :SGRF 1i60A 143 :FVGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=40288 # 1h1nA.316.161 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)E320 (1h1nA)E166 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1h1nA)S169 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1h1nA)W170 because L (left) conformation "forbidden" or filtered. T0547 316 :DIFI 1h1nA 162 :YIFV T0547 321 :SG 1h1nA 167 :GN Number of specific fragments extracted= 2 number of extra gaps= 2 total=40290 # 1qnrA.316.160 read from T0547.t2k.many.frag # found chain 1qnrA in training set Warning: unaligning (T0547)F318 (1qnrA)A163 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1qnrA)G167 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1qnrA)E169 because L (left) conformation "forbidden" or filtered. T0547 316 :DI 1qnrA 161 :IF T0547 319 :IES 1qnrA 164 :WEL T0547 323 :R 1qnrA 168 :N Number of specific fragments extracted= 3 number of extra gaps= 3 total=40293 # 1muwA.316.175 read from T0547.t2k.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)E320 (1muwA)E180 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1muwA)P181 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :DIFI 1muwA 176 :RFAI T0547 322 :GRF 1muwA 182 :KPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=40295 # 1uasA.316.158 read from T0547.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)D316 (1uasA)F159 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1uasA)E167 because L (left) conformation "forbidden" or filtered. T0547 317 :IFIESGR 1uasA 160 :SLCEWGK Number of specific fragments extracted= 1 number of extra gaps= 2 total=40296 # 2a14A.316.56 read from T0547.t2k.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)F324 (2a14A)G65 because S (epsilon) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 2a14A 57 :DTLIDIGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=40297 # 1ka9H.316.41 read from T0547.t2k.many.frag # found chain 1ka9H in template set Warning: unaligning (T0547)F324 (1ka9H)G50 because S (epsilon) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1ka9H 42 :DLLVLPGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=40298 # 1zz1A.316.304 read from T0547.t2k.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)E320 (1zz1A)E309 because Y (epsilon') conformation "forbidden" or filtered. T0547 316 :DIFI 1zz1A 305 :VFVQ T0547 321 :SGRF 1zz1A 310 :GGYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=40300 # 1mla.316.269 read from T0547.t2k.many.frag # found chain 1mla in training set T0547 316 :DIFIESGRF 1mla 270 :EHLYEVGPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=40301 # 1nv8A.316.243 read from T0547.t2k.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)G322 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1nv8A)E249 Warning: unaligning (T0547)R323 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1nv8A)E249 T0547 316 :DIFIES 1nv8A 242 :IVLMEI T0547 324 :F 1nv8A 250 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=40303 # 1wkcA.316.103 read from T0547.t2k.many.frag # found chain 1wkcA in training set Warning: unaligning (T0547)E320 (1wkcA)V108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1wkcA)P109 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :DIFI 1wkcA 104 :DLVV T0547 322 :GRF 1wkcA 110 :GLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40305 # 1k5cA.316.294 read from T0547.t2k.many.frag # found chain 1k5cA in training set Warning: unaligning (T0547)S321 because of BadResidue code BAD_PEPTIDE in next template residue (1k5cA)G301 Warning: unaligning (T0547)G322 because of BadResidue code BAD_PEPTIDE at template residue (1k5cA)G301 Warning: unaligning (T0547)R323 (1k5cA)N302 because D (zeta) conformation "forbidden" or filtered. T0547 316 :DIFIE 1k5cA 295 :RVTVE T0547 324 :F 1k5cA 303 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=40307 # 1q2lA.316.720 read from T0547.t2k.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)G322 (1q2lA)A750 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :DIFIES 1q2lA 744 :SVIFEK T0547 323 :RF 1q2lA 751 :GN Number of specific fragments extracted= 2 number of extra gaps= 1 total=40309 1pmmA expands to /projects/compbio/data/pdb/1pmm.pdb.gz 1pmmA:Skipped atom 1019, because occupancy 0.500 <= existing 0.500 in 1pmmA Skipped atom 1021, because occupancy 0.500 <= existing 0.500 in 1pmmA Skipped atom 1023, because occupancy 0.500 <= existing 0.500 in 1pmmA Skipped atom 1947, because occupancy 0.500 <= existing 0.500 in 1pmmA Skipped atom 3346, because occupancy 0.500 <= existing 0.500 in 1pmmA Skipped atom 3348, because occupancy 0.500 <= existing 0.500 in 1pmmA Skipped atom 3350, because occupancy 0.500 <= existing 0.500 in 1pmmA # 1pmmA.316.267 read from T0547.t2k.many.frag # adding 1pmmA to template set # found chain 1pmmA in template set Warning: unaligning (T0547)I317 (1pmmA)S269 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1pmmA)A272 because Y (epsilon') conformation "forbidden" or filtered. T0547 316 :D 1pmmA 268 :K T0547 318 :FI 1pmmA 270 :IS T0547 321 :SGRF 1pmmA 273 :SGHK Number of specific fragments extracted= 3 number of extra gaps= 2 total=40312 # 1tuoA.316.327 read from T0547.t2k.many.frag # found chain 1tuoA in training set T0547 316 :DIFIESGRF 1tuoA 328 :FIGGEESGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=40313 # 1qtwA.316.140 read from T0547.t2k.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)E320 (1qtwA)E145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1qtwA)G149 because L (left) conformation "forbidden" or filtered. T0547 316 :DIFI 1qtwA 141 :TAVI T0547 321 :SGR 1qtwA 146 :NTA Number of specific fragments extracted= 2 number of extra gaps= 2 total=40315 # 2yhx.316.385 read from T0547.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)D316 (2yhx)H387 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X391 Warning: unaligning (T0547)R323 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X394 Warning: unaligning (T0547)F324 because of BadResidue code BAD_PEPTIDE in next template residue (2yhx)S396 T0547 317 :IFI 2yhx 388 :IAA T0547 321 :SG 2yhx 392 :GS Number of specific fragments extracted= 2 number of extra gaps= 3 total=40317 # 1tca.316.99 read from T0547.t2k.many.frag # found chain 1tca in training set T0547 316 :DIFIESGRF 1tca 100 :PVLTWSQGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=40318 # 1zhaA.316.148 read from T0547.t2k.many.frag # found chain 1zhaA in template set Warning: unaligning (T0547)D316 (1zhaA)I1149 because E (beta_S) conformation "forbidden" or filtered. T0547 317 :IFIESGRF 1zhaA 1150 :YLTERGTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=40319 # 1x38A.316.518 read from T0547.t2k.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)D316 (1x38A)A519 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1x38A)S524 because Y (epsilon') conformation "forbidden" or filtered. T0547 317 :IFIE 1x38A 520 :TVLI T0547 322 :GRF 1x38A 525 :GRP Number of specific fragments extracted= 2 number of extra gaps= 2 total=40321 1u0jA expands to /projects/compbio/data/pdb/1u0j.pdb.gz 1u0jA:# 1u0jA.316.150 read from T0547.t2k.many.frag # adding 1u0jA to template set # found chain 1u0jA in template set Warning: unaligning (T0547)S321 (1u0jA)E379 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1u0jA)G380 because S (epsilon) conformation "forbidden" or filtered. T0547 316 :DIFIE 1u0jA 374 :VIWWE T0547 323 :RF 1u0jA 381 :KM Number of specific fragments extracted= 2 number of extra gaps= 1 total=40323 # 1j79A.316.171 read from T0547.t2k.many.frag # found chain 1j79A in training set T0547 316 :DIFIESGRF 1j79A 172 :KVVFEHITT Number of specific fragments extracted= 1 number of extra gaps= 0 total=40324 1njrA expands to /projects/compbio/data/pdb/1njr.pdb.gz 1njrA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1njrA.316.185 read from T0547.t2k.many.frag # adding 1njrA to template set # found chain 1njrA in template set Warning: unaligning (T0547)G322 (1njrA)G192 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1njrA)C194 because L (left) conformation "forbidden" or filtered. T0547 316 :DIFIES 1njrA 186 :DGLIIP T0547 323 :R 1njrA 193 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=40326 # 1knwA.317.264 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 317 :IFIESGRFV 1knwA 265 :LEIEPGRFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=40327 # 7odcA.317.270 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 317 :IFIESGRFV 7odcA 271 :IIAEPGRYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=40328 # 1zedA.317.307 read from T0547.t2k.many.frag # found chain 1zedA in training set T0547 317 :IFIESGRFV 1zedA 308 :LFVEGGRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=40329 # 1zpdA.317.383 read from T0547.t2k.many.frag # found chain 1zpdA in template set T0547 317 :IFIESGRFV 1zpdA 384 :VIAETGDSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=40330 # 2bhuA.317.304 read from T0547.t2k.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)G322 (2bhuA)H310 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (2bhuA)N312 because L (left) conformation "forbidden" or filtered. T0547 317 :IFIES 2bhuA 305 :LLAED T0547 323 :R 2bhuA 311 :R T0547 325 :V 2bhuA 313 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=40333 # 2ab0A.317.68 read from T0547.t2k.many.frag # found chain 2ab0A in training set T0547 317 :IFIESGRFV 2ab0A 69 :VIVLPGGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=40334 # 1qnrA.317.161 read from T0547.t2k.many.frag # found chain 1qnrA in training set Warning: unaligning (T0547)E320 (1qnrA)E165 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1qnrA)N168 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFI 1qnrA 162 :FAW T0547 321 :SG 1qnrA 166 :LG T0547 324 :FV 1qnrA 169 :EP Number of specific fragments extracted= 3 number of extra gaps= 2 total=40337 # 1h1nA.317.162 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)E320 (1h1nA)E166 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1h1nA)S169 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1h1nA)W170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V325 (1h1nA)T171 because L (left) conformation "forbidden" or filtered. T0547 317 :IFI 1h1nA 163 :IFV T0547 321 :SG 1h1nA 167 :GN Number of specific fragments extracted= 2 number of extra gaps= 2 total=40339 # 1wkcA.317.104 read from T0547.t2k.many.frag # found chain 1wkcA in training set Warning: unaligning (T0547)G322 (1wkcA)G110 because Y (epsilon') conformation "forbidden" or filtered. T0547 317 :IFIES 1wkcA 105 :LVVVP T0547 323 :RFV 1wkcA 111 :LAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=40341 # 1x38A.317.519 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 317 :IFIESGRFV 1x38A 520 :TVLISGRPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40342 # 1k5cA.317.295 read from T0547.t2k.many.frag # found chain 1k5cA in training set Warning: unaligning (T0547)S321 because of BadResidue code BAD_PEPTIDE in next template residue (1k5cA)G301 Warning: unaligning (T0547)G322 because of BadResidue code BAD_PEPTIDE at template residue (1k5cA)G301 T0547 317 :IFIE 1k5cA 296 :VTVE T0547 323 :RFV 1k5cA 302 :NCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=40344 # 1rlr.317.225 read from T0547.t2k.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)I317 because of BadResidue code BAD_PEPTIDE at template residue (1rlr)V226 Warning: unaligning (T0547)G322 (1rlr)G231 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FIES 1rlr 227 :LIEC T0547 323 :RFV 1rlr 232 :DSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=40346 # 1mla.317.270 read from T0547.t2k.many.frag # found chain 1mla in training set T0547 317 :IFIESGRFV 1mla 271 :HLYEVGPGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=40347 # 1qexA.317.95 read from T0547.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0547)E320 (1qexA)E99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V325 (1qexA)G104 because T (delta_L) conformation "forbidden" or filtered. T0547 317 :IFI 1qexA 96 :VII T0547 321 :SGRF 1qexA 100 :RGEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=40349 1cjaA expands to /projects/compbio/data/pdb/1cja.pdb.gz 1cjaA:# 1cjaA.317.158 read from T0547.t2k.many.frag # adding 1cjaA to template set # found chain 1cjaA in template set Warning: unaligning (T0547)G322 (1cjaA)V165 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1cjaA)G167 because Y (epsilon') conformation "forbidden" or filtered. T0547 317 :IFIES 1cjaA 160 :LLMEL T0547 323 :R 1cjaA 166 :R T0547 325 :V 1cjaA 168 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=40352 # 1tuoA.317.328 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)I319 (1tuoA)G331 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1tuoA)S334 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1tuoA)G335 because T (delta_L) conformation "forbidden" or filtered. T0547 317 :IF 1tuoA 329 :IG T0547 320 :ES 1tuoA 332 :EE T0547 324 :FV 1tuoA 336 :GV Number of specific fragments extracted= 3 number of extra gaps= 2 total=40355 # 1n4wA.317.31 read from T0547.t2k.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)G322 (1n4wA)G42 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFIES 1n4wA 37 :LMLEM T0547 323 :RFV 1n4wA 43 :QLW Number of specific fragments extracted= 2 number of extra gaps= 1 total=40357 # 1m22A.317.181 read from T0547.t2k.many.frag # found chain 1m22A in training set T0547 317 :IFIESGRFV 1m22A 219 :IGTETDGSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=40358 # 1uasA.317.159 read from T0547.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)V325 (1uasA)N168 because L (left) conformation "forbidden" or filtered. T0547 317 :IFIESGRF 1uasA 160 :SLCEWGKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=40359 # 1ka9H.317.42 read from T0547.t2k.many.frag # found chain 1ka9H in template set Warning: unaligning (T0547)F324 (1ka9H)G50 because S (epsilon) conformation "forbidden" or filtered. T0547 317 :IFIESGR 1ka9H 43 :LLVLPGQ T0547 325 :V 1ka9H 51 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=40361 1wuaA expands to /projects/compbio/data/pdb/1wua.pdb.gz 1wuaA:Skipped atom 16, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 18, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 20, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 22, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 24, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 26, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 28, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 186, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 188, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 190, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 192, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 194, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 196, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 198, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 200, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 202, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 687, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 689, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 691, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 693, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 695, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 697, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1082, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1084, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1086, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1088, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1090, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1092, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1094, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1096, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1098, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1701, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1703, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1705, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1707, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1709, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1711, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1713, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1715, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1749, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1751, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1753, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1755, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1757, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1759, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1761, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1763, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1765, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1888, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1890, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1892, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1894, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1896, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1898, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1900, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1902, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2474, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2476, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2478, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2480, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2482, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2484, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2486, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2488, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2490, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2639, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2641, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2643, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2645, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2647, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2649, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2651, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2653, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2655, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2657, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2659, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2875, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2877, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2879, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2881, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2883, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2885, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2887, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2889, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4237, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4239, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4241, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4243, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4245, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4247, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4249, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4251, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4253, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4377, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4379, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4381, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4383, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4385, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4387, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4389, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4391, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4393, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4616, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4618, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4620, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4622, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4624, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4626, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4628, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4630, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4660, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4662, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4664, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4666, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4668, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4670, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4672, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4674, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4694, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4696, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4698, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4700, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4702, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4704, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4882, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4884, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4886, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4888, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4890, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4892, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4894, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4896, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 5492, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 5494, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 5496, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 5498, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 5500, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 5502, because occupancy 0.500 <= existing 0.500 in 1wuaA # 1wuaA.317.150 read from T0547.t2k.many.frag # adding 1wuaA to template set # found chain 1wuaA in template set T0547 317 :IFIESGRFV 1wuaA 151 :IVLDSGDGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40362 # 1nv8A.317.244 read from T0547.t2k.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)G322 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1nv8A)E249 Warning: unaligning (T0547)R323 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1nv8A)E249 T0547 317 :IFIES 1nv8A 243 :VLMEI T0547 324 :FV 1nv8A 250 :DQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=40364 # 1l5oA.317.170 read from T0547.t2k.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)E320 (1l5oA)E174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1l5oA)A178 because T (delta_L) conformation "forbidden" or filtered. T0547 317 :IFI 1l5oA 171 :GVG T0547 321 :SGR 1l5oA 175 :LGM T0547 325 :V 1l5oA 179 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=40367 # 1pmmA.317.268 read from T0547.t2k.many.frag # found chain 1pmmA in template set Warning: unaligning (T0547)E320 (1pmmA)A272 because Y (epsilon') conformation "forbidden" or filtered. T0547 317 :IFI 1pmmA 269 :SIS T0547 321 :SGRFV 1pmmA 273 :SGHKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=40369 # 1yt8A.317.432 read from T0547.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)E320 (1yt8A)T436 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1yt8A)S440 because T (delta_L) conformation "forbidden" or filtered. T0547 317 :IFI 1yt8A 433 :YVL T0547 321 :SGR 1yt8A 437 :CGS T0547 325 :V 1yt8A 441 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=40372 # 1muwA.317.176 read from T0547.t2k.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)V325 (1muwA)E185 because L (left) conformation "forbidden" or filtered. T0547 317 :IFIESGRF 1muwA 177 :FAIEPKPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=40373 # 1wdpA.317.174 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)E320 (1wdpA)E178 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFI 1wdpA 175 :IDI T0547 321 :SGRFV 1wdpA 179 :VGLGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=40375 # 1eu1A.317.426 read from T0547.t2k.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)R323 (1eu1A)G433 because Y (epsilon') conformation "forbidden" or filtered. T0547 317 :IFIESG 1eu1A 427 :LAYWAG T0547 324 :FV 1eu1A 434 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=40377 # 1i60A.317.138 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 317 :IFIESGRFV 1i60A 139 :IALEFVGHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=40378 # 1qwgA.317.201 read from T0547.t2k.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)R323 (1qwgA)Q208 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFIESG 1qwgA 202 :VIFEAP T0547 324 :FV 1qwgA 209 :KS Number of specific fragments extracted= 2 number of extra gaps= 1 total=40380 # 1knwA.318.265 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E320 (1knwA)E268 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1knwA)G270 because H (helix) conformation "forbidden" or filtered. T0547 318 :FI 1knwA 266 :EI T0547 321 :S 1knwA 269 :P T0547 323 :RFVA 1knwA 271 :RFLV Number of specific fragments extracted= 3 number of extra gaps= 2 total=40383 # 7odcA.318.271 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)S321 (7odcA)P275 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FIE 7odcA 272 :IAE T0547 322 :GRFVA 7odcA 276 :GRYYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40385 # 1zedA.318.308 read from T0547.t2k.many.frag # found chain 1zedA in training set T0547 318 :FIESGRFVA 1zedA 309 :FVEGGRIDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=40386 # 1zpdA.318.384 read from T0547.t2k.many.frag # found chain 1zpdA in template set T0547 318 :FIESGRFVA 1zpdA 385 :IAETGDSWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=40387 # 2ab0A.318.69 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)S321 (2ab0A)P73 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FIE 2ab0A 70 :IVL T0547 322 :GRFVA 2ab0A 74 :GGIKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40389 # 1m22A.318.182 read from T0547.t2k.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)G322 (1m22A)D224 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1m22A)G225 because T (delta_L) conformation "forbidden" or filtered. T0547 318 :FIES 1m22A 220 :GTET T0547 324 :FVA 1m22A 226 :SIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40391 # 1q7zA.318.401 read from T0547.t2k.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)I319 (1q7zA)A403 because G (3-10) conformation "forbidden" or filtered. T0547 318 :F 1q7zA 402 :R T0547 320 :ESGRFVA 1q7zA 404 :YPGRSLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=40393 # 1wkcA.318.105 read from T0547.t2k.many.frag # found chain 1wkcA in training set Warning: unaligning (T0547)G322 (1wkcA)G110 because Y (epsilon') conformation "forbidden" or filtered. T0547 318 :FIES 1wkcA 106 :VVVP T0547 323 :RFVA 1wkcA 111 :LAFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=40395 # 1l5oA.318.171 read from T0547.t2k.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)E320 (1l5oA)E174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1l5oA)G176 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1l5oA)M177 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1l5oA)A178 because T (delta_L) conformation "forbidden" or filtered. T0547 318 :FI 1l5oA 172 :VG T0547 321 :S 1l5oA 175 :L T0547 325 :VA 1l5oA 179 :NT Number of specific fragments extracted= 3 number of extra gaps= 2 total=40398 # 1x38A.318.520 read from T0547.t2k.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)E320 (1x38A)I523 because E (beta_S) conformation "forbidden" or filtered. T0547 318 :FI 1x38A 521 :VL T0547 321 :SGRFVA 1x38A 524 :SGRPVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40400 # 1wuaA.318.151 read from T0547.t2k.many.frag # found chain 1wuaA in template set T0547 318 :FIESGRFVA 1wuaA 152 :VLDSGDGVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=40401 # 1zhxA.318.217 read from T0547.t2k.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)G322 (1zhxA)K218 because E (beta_S) conformation "forbidden" or filtered. T0547 318 :FIES 1zhxA 214 :ELEG T0547 323 :RFVA 1zhxA 219 :SYIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=40403 # 1vkpA.318.159 read from T0547.t2k.many.frag # found chain 1vkpA in training set T0547 318 :FIESGRFVA 1vkpA 160 :ILEGGSIHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40404 # 1cjaA.318.159 read from T0547.t2k.many.frag # found chain 1cjaA in template set Warning: unaligning (T0547)E320 (1cjaA)E163 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1cjaA)V165 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1cjaA)R166 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FI 1cjaA 161 :LM T0547 321 :S 1cjaA 164 :L T0547 324 :FVA 1cjaA 167 :GIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=40407 # 1qnrA.318.162 read from T0547.t2k.many.frag # found chain 1qnrA in training set Warning: unaligning (T0547)G322 (1qnrA)G167 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1qnrA)E169 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1qnrA)R171 because E (beta_S) conformation "forbidden" or filtered. T0547 318 :FIES 1qnrA 163 :AWEL T0547 323 :R 1qnrA 168 :N T0547 325 :V 1qnrA 170 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=40410 # 1eu1A.318.427 read from T0547.t2k.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)R323 (1eu1A)G433 because Y (epsilon') conformation "forbidden" or filtered. T0547 318 :FIESG 1eu1A 428 :AYWAG T0547 324 :FVA 1eu1A 434 :NPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=40412 # 1tuoA.318.330 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)A326 (1tuoA)Y339 because D (zeta) conformation "forbidden" or filtered. T0547 318 :FIESGRFV 1tuoA 331 :GEESGGVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=40413 # 1n4wA.318.32 read from T0547.t2k.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)E320 (1n4wA)E40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1n4wA)G42 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FI 1n4wA 38 :ML T0547 321 :S 1n4wA 41 :M T0547 323 :RFVA 1n4wA 43 :QLWN Number of specific fragments extracted= 3 number of extra gaps= 2 total=40416 # 1ooyA.318.302 read from T0547.t2k.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)V325 (1ooyA)G310 because T (delta_L) conformation "forbidden" or filtered. T0547 318 :FIESGRF 1ooyA 303 :QSENGIL T0547 326 :A 1ooyA 311 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=40418 2bpa1 expands to /projects/compbio/data/pdb/2bpa.pdb.gz 2bpa1:# 2bpa1.318.20 read from T0547.t2k.many.frag # adding 2bpa1 to template set # found chain 2bpa1 in template set T0547 318 :FIESGRFVA 2bpa1 21 :AGQIGRLIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=40419 # 1h1nA.318.163 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)R323 (1h1nA)S169 because L (left) conformation "forbidden" or filtered. T0547 318 :FIESG 1h1nA 164 :FVEGN T0547 324 :FVA 1h1nA 170 :WTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40421 1svpA expands to /projects/compbio/data/pdb/1svp.pdb.gz 1svpA:# 1svpA.318.106 read from T0547.t2k.many.frag # adding 1svpA to template set # found chain 1svpA in template set Warning: unaligning (T0547)I319 (1svpA)G213 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1svpA)A215 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1svpA)R217 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :F 1svpA 212 :R T0547 320 :E 1svpA 214 :D T0547 322 :G 1svpA 216 :G T0547 324 :FVA 1svpA 218 :PIM Number of specific fragments extracted= 4 number of extra gaps= 3 total=40425 # 1k5cA.318.296 read from T0547.t2k.many.frag # found chain 1k5cA in training set Warning: unaligning (T0547)S321 because of BadResidue code BAD_PEPTIDE in next template residue (1k5cA)G301 Warning: unaligning (T0547)G322 because of BadResidue code BAD_PEPTIDE at template residue (1k5cA)G301 T0547 318 :FIE 1k5cA 297 :TVE T0547 323 :RFVA 1k5cA 302 :NCSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40427 # 1tz9A.318.324 read from T0547.t2k.many.frag # found chain 1tz9A in template set Warning: unaligning (T0547)E320 (1tz9A)D317 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1tz9A)W323 because L (left) conformation "forbidden" or filtered. T0547 318 :FI 1tz9A 315 :RP T0547 321 :SGRFV 1tz9A 318 :HGRAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=40429 # 1wdpA.318.175 read from T0547.t2k.many.frag # found chain 1wdpA in training set T0547 318 :FIESGRFVA 1wdpA 176 :DIEVGLGPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=40430 # 1ywfA.318.178 read from T0547.t2k.many.frag # found chain 1ywfA in template set Warning: unaligning (T0547)F318 (1ywfA)H159 because Y (epsilon') conformation "forbidden" or filtered. T0547 319 :IESGRFVA 1ywfA 160 :CFAGKDRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=40431 # 1qwgA.318.130 read from T0547.t2k.many.frag # found chain 1qwgA in training set T0547 318 :FIESGRFVA 1qwgA 131 :LTEVGKKMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=40432 # 2bhuA.318.305 read from T0547.t2k.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)E320 (2bhuA)E308 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (2bhuA)N312 because L (left) conformation "forbidden" or filtered. T0547 318 :FI 2bhuA 306 :LA T0547 321 :SGR 2bhuA 309 :DHR T0547 325 :VA 2bhuA 313 :LP Number of specific fragments extracted= 3 number of extra gaps= 2 total=40435 # 1ka9H.318.43 read from T0547.t2k.many.frag # found chain 1ka9H in template set T0547 318 :FIESGRFVA 1ka9H 44 :LVLPGQGHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=40436 # 1t9hA.318.220 read from T0547.t2k.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)S321 (1t9hA)S215 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1t9hA)G217 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1t9hA)A220 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FIE 1t9hA 212 :IHT T0547 322 :G 1t9hA 216 :G T0547 324 :FV 1t9hA 218 :LV Number of specific fragments extracted= 3 number of extra gaps= 3 total=40439 # 1knwA.319.266 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 319 :IESGRFVAA 1knwA 267 :IEPGRFLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=40440 # 7odcA.319.272 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G322 (7odcA)G276 because H (helix) conformation "forbidden" or filtered. T0547 319 :IES 7odcA 273 :AEP T0547 323 :RFVAA 7odcA 277 :RYYVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40442 # 1zedA.319.309 read from T0547.t2k.many.frag # found chain 1zedA in training set T0547 319 :IESGRFVAA 1zedA 310 :VEGGRIDHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=40443 # 1q7zA.319.402 read from T0547.t2k.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)A326 (1q7zA)F410 because E (beta_S) conformation "forbidden" or filtered. T0547 319 :IESGRFV 1q7zA 403 :AYPGRSL T0547 327 :A 1q7zA 411 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=40445 # 2ab0A.319.70 read from T0547.t2k.many.frag # found chain 2ab0A in training set T0547 319 :IESGRFVAA 2ab0A 71 :VLPGGIKGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=40446 # 1svpA.319.107 read from T0547.t2k.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)I319 (1svpA)G213 because T (delta_L) conformation "forbidden" or filtered. T0547 320 :ESGRFVAA 1svpA 214 :DAGRPIMD Number of specific fragments extracted= 1 number of extra gaps= 1 total=40447 # 1t9hA.319.221 read from T0547.t2k.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)R323 (1t9hA)G217 because Y (epsilon') conformation "forbidden" or filtered. T0547 319 :IESG 1t9hA 213 :HTSG T0547 324 :FVAA 1t9hA 218 :LVAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=40449 # 1zpdA.319.385 read from T0547.t2k.many.frag # found chain 1zpdA in template set T0547 319 :IESGRFVAA 1zpdA 386 :AETGDSWFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=40450 # 1wkcA.319.106 read from T0547.t2k.many.frag # found chain 1wkcA in training set T0547 319 :IESGRFVAA 1wkcA 107 :VVPGLAFDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=40451 # 1zhxA.319.218 read from T0547.t2k.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)S321 (1zhxA)G217 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1zhxA)K218 because E (beta_S) conformation "forbidden" or filtered. T0547 319 :IE 1zhxA 215 :LE T0547 323 :RFVAA 1zhxA 219 :SYIQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=40453 # 1vkpA.319.160 read from T0547.t2k.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)A327 (1vkpA)D169 because G (3-10) conformation "forbidden" or filtered. T0547 319 :IESGRFVA 1vkpA 161 :LEGGSIHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=40454 # 1l5oA.319.172 read from T0547.t2k.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)E320 (1l5oA)E174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1l5oA)G176 because E (beta_S) conformation "forbidden" or filtered. T0547 319 :I 1l5oA 173 :G T0547 321 :S 1l5oA 175 :L T0547 323 :RFVAA 1l5oA 177 :MANTT Number of specific fragments extracted= 3 number of extra gaps= 2 total=40457 1e7uA expands to /projects/compbio/data/pdb/1e7u.pdb.gz 1e7uA:# 1e7uA.319.813 read from T0547.t2k.many.frag # adding 1e7uA to template set # found chain 1e7uA in template set Warning: unaligning (T0547)A327 (1e7uA)I963 because Y (epsilon') conformation "forbidden" or filtered. T0547 319 :IESGRFVA 1e7uA 955 :SETGNLFH Number of specific fragments extracted= 1 number of extra gaps= 1 total=40458 # 1m22A.319.183 read from T0547.t2k.many.frag # found chain 1m22A in training set T0547 319 :IESGRFVAA 1m22A 221 :TETDGSIVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=40459 # 1wuaA.319.152 read from T0547.t2k.many.frag # found chain 1wuaA in template set Warning: unaligning (T0547)E320 (1wuaA)D154 because E (beta_S) conformation "forbidden" or filtered. T0547 319 :I 1wuaA 153 :L T0547 321 :SGRFVAA 1wuaA 155 :SGDGVTH Number of specific fragments extracted= 2 number of extra gaps= 1 total=40461 # 1x38A.319.521 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 319 :IESGRFVAA 1x38A 522 :LISGRPVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40462 # 2bpa1.319.21 read from T0547.t2k.many.frag # found chain 2bpa1 in template set Warning: unaligning (T0547)I319 (2bpa1)G22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (2bpa1)T29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (2bpa1)I30 because G (3-10) conformation "forbidden" or filtered. T0547 320 :ESGRFV 2bpa1 23 :QIGRLI Number of specific fragments extracted= 1 number of extra gaps= 2 total=40463 # 1ooyA.319.303 read from T0547.t2k.many.frag # found chain 1ooyA in training set T0547 319 :IESGRFVAA 1ooyA 304 :SENGILGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=40464 # 1qlmA.319.167 read from T0547.t2k.many.frag # found chain 1qlmA in template set T0547 319 :IESGRFVAA 1qlmA 168 :VAPTASIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=40465 # 1eu1A.319.428 read from T0547.t2k.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)R323 (1eu1A)G433 because Y (epsilon') conformation "forbidden" or filtered. T0547 319 :IESG 1eu1A 429 :YWAG T0547 324 :FVAA 1eu1A 434 :NPFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40467 # 1tzlA.319.348 read from T0547.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)F324 (1tzlA)Y355 because L (left) conformation "forbidden" or filtered. T0547 319 :IESGR 1tzlA 350 :PSLGS T0547 325 :VAA 1tzlA 356 :ITE Number of specific fragments extracted= 2 number of extra gaps= 1 total=40469 # 1s9rA.319.211 read from T0547.t2k.many.frag # found chain 1s9rA in training set Warning: unaligning (T0547)E320 (1s9rA)E213 because E (beta_S) conformation "forbidden" or filtered. T0547 319 :I 1s9rA 212 :I T0547 321 :SGRFVAA 1s9rA 214 :GGDVFIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=40471 # 1tuoA.319.331 read from T0547.t2k.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)A326 (1tuoA)Y339 because D (zeta) conformation "forbidden" or filtered. T0547 319 :IESGRFV 1tuoA 332 :EESGGVG T0547 327 :A 1tuoA 340 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=40473 # 1tz9A.319.325 read from T0547.t2k.many.frag # found chain 1tz9A in template set Warning: unaligning (T0547)E320 (1tz9A)D317 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1tz9A)D324 because L (left) conformation "forbidden" or filtered. T0547 319 :I 1tz9A 316 :P T0547 321 :SGRFVA 1tz9A 318 :HGRAIW Number of specific fragments extracted= 2 number of extra gaps= 2 total=40475 # 1ywfA.319.179 read from T0547.t2k.many.frag # found chain 1ywfA in template set T0547 319 :IESGRFVAA 1ywfA 160 :CFAGKDRTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=40476 # 1cjaA.319.160 read from T0547.t2k.many.frag # found chain 1cjaA in template set T0547 319 :IESGRFVAA 1cjaA 162 :MELVRGITL Number of specific fragments extracted= 1 number of extra gaps= 0 total=40477 1kuuA expands to /projects/compbio/data/pdb/1kuu.pdb.gz 1kuuA:# 1kuuA.319.0 read from T0547.t2k.many.frag # adding 1kuuA to template set # found chain 1kuuA in template set Warning: unaligning (T0547)I319 because first residue in template chain is (1kuuA)M1 T0547 320 :ESGRFVAA 1kuuA 2 :YLGRILAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40478 # 1h2wA.319.132 read from T0547.t2k.many.frag # found chain 1h2wA in training set T0547 319 :IESGRFVAA 1h2wA 133 :SEDGEYFAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=40479 # 1v0wA.319.164 read from T0547.t2k.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)E320 because of BadResidue code BAD_PEPTIDE in next template residue (1v0wA)H170 Warning: unaligning (T0547)S321 because of BadResidue code BAD_PEPTIDE at template residue (1v0wA)H170 T0547 319 :I 1v0wA 168 :W T0547 322 :GRFVAA 1v0wA 171 :SKILVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40481 # 1lvmA.319.156 read from T0547.t2k.many.frag # found chain 1lvmA in training set Warning: unaligning (T0547)I319 (1lvmA)G149 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1lvmA)S157 because P (beta_P) conformation "forbidden" or filtered. T0547 320 :ESGRFVA 1lvmA 150 :QCGSPLV Number of specific fragments extracted= 1 number of extra gaps= 2 total=40482 # 1knwA.320.267 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G322 (1knwA)G270 because H (helix) conformation "forbidden" or filtered. T0547 320 :ES 1knwA 268 :EP T0547 323 :RFVAAN 1knwA 271 :RFLVAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=40484 # 7odcA.320.273 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 320 :ESGRFVAAN 7odcA 274 :EPGRYYVAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=40485 # 1q7zA.320.403 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 320 :ESGRFVAAN 1q7zA 404 :YPGRSLFNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=40486 # 1zedA.320.310 read from T0547.t2k.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)E320 (1zedA)E311 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1zedA)R314 because G (3-10) conformation "forbidden" or filtered. T0547 321 :SG 1zedA 312 :GG T0547 324 :FVAAN 1zedA 315 :IDHGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=40488 # 1svpA.320.108 read from T0547.t2k.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)S321 (1svpA)A215 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1svpA)R217 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1svpA)D221 because P (beta_P) conformation "forbidden" or filtered. T0547 320 :E 1svpA 214 :D T0547 322 :G 1svpA 216 :G T0547 324 :FVA 1svpA 218 :PIM T0547 328 :N 1svpA 222 :N Number of specific fragments extracted= 4 number of extra gaps= 3 total=40492 # 1v0wA.320.165 read from T0547.t2k.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)E320 because of BadResidue code BAD_PEPTIDE in next template residue (1v0wA)H170 Warning: unaligning (T0547)S321 because of BadResidue code BAD_PEPTIDE at template residue (1v0wA)H170 Warning: unaligning (T0547)G322 (1v0wA)S171 because P (beta_P) conformation "forbidden" or filtered. T0547 323 :RFVAAN 1v0wA 172 :KILVVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=40493 # 1t9hA.320.222 read from T0547.t2k.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)S321 (1t9hA)S215 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1t9hA)T222 because E (beta_S) conformation "forbidden" or filtered. T0547 320 :E 1t9hA 214 :T T0547 322 :GRFVAA 1t9hA 216 :GGLVAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=40495 1zbxB expands to /projects/compbio/data/pdb/1zbx.pdb.gz 1zbxB:# 1zbxB.320.10 read from T0547.t2k.many.frag # adding 1zbxB to template set # found chain 1zbxB in template set Warning: unaligning (T0547)A326 (1zbxB)V496 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1zbxB)D498 because L (left) conformation "forbidden" or filtered. T0547 320 :ESGRFV 1zbxB 490 :VSPRFL T0547 327 :A 1zbxB 497 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=40497 # 1tzlA.320.349 read from T0547.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)N328 (1tzlA)Q359 because P (beta_P) conformation "forbidden" or filtered. T0547 320 :ESGRFVAA 1tzlA 351 :SLGSYITE Number of specific fragments extracted= 1 number of extra gaps= 1 total=40498 # 1w6gA.320.263 read from T0547.t2k.many.frag # found chain 1w6gA in training set T0547 320 :ESGRFVAAN 1w6gA 266 :DRLRPIINR Number of specific fragments extracted= 1 number of extra gaps= 0 total=40499 # 1wuaA.320.153 read from T0547.t2k.many.frag # found chain 1wuaA in template set T0547 320 :ESGRFVAAN 1wuaA 154 :DSGDGVTHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=40500 # 1kjqA.320.186 read from T0547.t2k.many.frag # found chain 1kjqA in training set T0547 320 :ESGRFVAAN 1kjqA 188 :GAGRVIVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=40501 # 1vkpA.320.161 read from T0547.t2k.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)E320 (1vkpA)E162 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1vkpA)G164 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1vkpA)D169 because G (3-10) conformation "forbidden" or filtered. T0547 321 :S 1vkpA 163 :G T0547 323 :RFVA 1vkpA 165 :SIHV T0547 328 :N 1vkpA 170 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=40504 # 1kuuA.320.1 read from T0547.t2k.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)R323 (1kuuA)R5 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1kuuA)G10 because Y (epsilon') conformation "forbidden" or filtered. T0547 320 :ESG 1kuuA 2 :YLG T0547 324 :FVAA 1kuuA 6 :ILAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=40506 # 1m22A.320.184 read from T0547.t2k.many.frag # found chain 1m22A in training set T0547 320 :ESGRFVAAN 1m22A 222 :ETDGSIVCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=40507 # 1lvmA.320.157 read from T0547.t2k.many.frag # found chain 1lvmA in training set Warning: unaligning (T0547)S321 (1lvmA)C151 because P (beta_P) conformation "forbidden" or filtered. T0547 320 :E 1lvmA 150 :Q T0547 322 :GRFVAAN 1lvmA 152 :GSPLVST Number of specific fragments extracted= 2 number of extra gaps= 1 total=40509 # 1zhxA.320.219 read from T0547.t2k.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)S321 (1zhxA)G217 because S (epsilon) conformation "forbidden" or filtered. T0547 320 :E 1zhxA 216 :E T0547 322 :GRFVAAN 1zhxA 218 :KSYIQSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=40511 # 1wkcA.320.107 read from T0547.t2k.many.frag # found chain 1wkcA in training set Warning: unaligning (T0547)S321 (1wkcA)P109 because P (beta_P) conformation "forbidden" or filtered. T0547 320 :E 1wkcA 108 :V T0547 322 :GRFVAAN 1wkcA 110 :GLAFDRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=40513 # 1l5oA.320.173 read from T0547.t2k.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)R323 (1l5oA)M177 because P (beta_P) conformation "forbidden" or filtered. T0547 320 :ESG 1l5oA 174 :ELG T0547 324 :FVAAN 1l5oA 178 :ANTTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=40515 # 1zhxA.320.117 read from T0547.t2k.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)S321 (1zhxA)L115 because P (beta_P) conformation "forbidden" or filtered. T0547 320 :E 1zhxA 114 :F T0547 322 :GRFVAAN 1zhxA 116 :GELFVGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=40517 # 2bpa1.320.22 read from T0547.t2k.many.frag # found chain 2bpa1 in template set T0547 320 :ESGRFVAAN 2bpa1 23 :QIGRLITIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=40518 # 1qlmA.320.168 read from T0547.t2k.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)E320 (1qlmA)A169 because E (beta_S) conformation "forbidden" or filtered. T0547 321 :SGRFVAAN 1qlmA 170 :PTASIVGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=40519 1k12A expands to /projects/compbio/data/pdb/1k12.pdb.gz 1k12A:# 1k12A.320.127 read from T0547.t2k.many.frag # adding 1k12A to template set # found chain 1k12A in template set Warning: unaligning (T0547)G322 (1k12A)G130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1k12A)Y136 because E (beta_S) conformation "forbidden" or filtered. T0547 320 :ES 1k12A 128 :MI T0547 323 :RFVAA 1k12A 131 :RYVVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=40521 # 1eu1A.320.429 read from T0547.t2k.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)R323 (1eu1A)G433 because Y (epsilon') conformation "forbidden" or filtered. T0547 320 :ESG 1eu1A 430 :WAG T0547 324 :FVAAN 1eu1A 434 :NPFAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=40523 # 1e7uA.320.814 read from T0547.t2k.many.frag # found chain 1e7uA in template set Warning: unaligning (T0547)R323 (1e7uA)N959 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1e7uA)I963 because Y (epsilon') conformation "forbidden" or filtered. T0547 320 :ESG 1e7uA 956 :ETG T0547 324 :FVA 1e7uA 960 :LFH T0547 328 :N 1e7uA 964 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=40526 # 1s9rA.320.212 read from T0547.t2k.many.frag # found chain 1s9rA in training set Warning: unaligning (T0547)A326 (1s9rA)I219 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1s9rA)N221 because Y (epsilon') conformation "forbidden" or filtered. T0547 320 :ESGRFV 1s9rA 213 :EGGDVF T0547 327 :A 1s9rA 220 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=40528 # 2fgqX.320.166 read from T0547.t2k.many.frag # found chain 2fgqX in training set Warning: unaligning (T0547)R323 (2fgqX)R170 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (2fgqX)G173 because Y (epsilon') conformation "forbidden" or filtered. T0547 320 :ESG 2fgqX 167 :SVG T0547 324 :FV 2fgqX 171 :YI T0547 327 :AN 2fgqX 174 :GY Number of specific fragments extracted= 3 number of extra gaps= 2 total=40531 # 1ywfA.320.180 read from T0547.t2k.many.frag # found chain 1ywfA in template set T0547 320 :ESGRFVAAN 1ywfA 161 :FAGKDRTGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=40532 # 1cjaA.320.161 read from T0547.t2k.many.frag # found chain 1cjaA in template set T0547 320 :ESGRFVAAN 1cjaA 163 :ELVRGITLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=40533 # 1x38A.320.522 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 320 :ESGRFVAAN 1x38A 523 :ISGRPVVVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=40534 # 1knwA.321.268 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A326 (1knwA)V274 because G (3-10) conformation "forbidden" or filtered. T0547 321 :SGRFV 1knwA 269 :PGRFL T0547 327 :ANH 1knwA 275 :AQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=40536 # 7odcA.321.274 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G322 (7odcA)G276 because H (helix) conformation "forbidden" or filtered. T0547 321 :S 7odcA 275 :P T0547 323 :RFVAANH 7odcA 277 :RYYVASA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40538 # 1q7zA.321.404 read from T0547.t2k.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)G322 (1q7zA)G406 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1q7zA)S412 because S (epsilon) conformation "forbidden" or filtered. T0547 321 :S 1q7zA 405 :P T0547 323 :RFVAA 1q7zA 407 :RSLFN T0547 329 :H 1q7zA 413 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=40541 # 1w6gA.321.264 read from T0547.t2k.many.frag # found chain 1w6gA in training set T0547 321 :SGRFVAANH 1w6gA 267 :RLRPIINRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=40542 # 1v0wA.321.166 read from T0547.t2k.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)S321 because of BadResidue code BAD_PEPTIDE at template residue (1v0wA)H170 Warning: unaligning (T0547)N328 (1v0wA)D177 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1v0wA)G178 because T (delta_L) conformation "forbidden" or filtered. T0547 322 :GRFVAA 1v0wA 171 :SKILVV Number of specific fragments extracted= 1 number of extra gaps= 2 total=40543 # 1svpA.321.109 read from T0547.t2k.many.frag # found chain 1svpA in template set T0547 321 :SGRFVAANH 1svpA 215 :AGRPIMDNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=40544 # 1tzlA.321.350 read from T0547.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)F324 (1tzlA)Y355 because L (left) conformation "forbidden" or filtered. T0547 321 :SGR 1tzlA 352 :LGS T0547 325 :VAANH 1tzlA 356 :ITEQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=40546 # 1lvmA.321.158 read from T0547.t2k.many.frag # found chain 1lvmA in training set T0547 321 :SGRFVAANH 1lvmA 151 :CGSPLVSTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=40547 # 1zbxB.321.11 read from T0547.t2k.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)N328 (1zbxB)D498 because L (left) conformation "forbidden" or filtered. T0547 321 :SGRFVAA 1zbxB 491 :SPRFLVA T0547 329 :H 1zbxB 499 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=40549 # 1t9hA.321.223 read from T0547.t2k.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)R323 (1t9hA)G217 because Y (epsilon') conformation "forbidden" or filtered. T0547 321 :SG 1t9hA 215 :SG T0547 324 :FVAANH 1t9hA 218 :LVADTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=40551 # 1zhxA.321.220 read from T0547.t2k.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)S321 (1zhxA)G217 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1zhxA)T225 because G (3-10) conformation "forbidden" or filtered. T0547 322 :GRFVAAN 1zhxA 218 :KSYIQSS Number of specific fragments extracted= 1 number of extra gaps= 2 total=40552 # 1u8xX.321.216 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)G322 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)R196 Warning: unaligning (T0547)R323 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)R196 Warning: unaligning (T0547)A326 (1u8xX)G199 because Y (epsilon') conformation "forbidden" or filtered. T0547 321 :S 1u8xX 194 :K T0547 324 :FV 1u8xX 197 :YY T0547 327 :ANH 1u8xX 200 :LNH Number of specific fragments extracted= 3 number of extra gaps= 2 total=40555 # 2bmoA.321.300 read from T0547.t2k.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)G322 (2bmoA)N302 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 321 :S 2bmoA 301 :N T0547 323 :RFVA 2bmoA 303 :SFLT Number of specific fragments extracted= 2 number of extra gaps= 2 total=40557 # 1kuuA.321.2 read from T0547.t2k.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)G322 (1kuuA)G4 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1kuuA)G10 because Y (epsilon') conformation "forbidden" or filtered. T0547 321 :S 1kuuA 3 :L T0547 323 :RFVAA 1kuuA 5 :RILAV T0547 329 :H 1kuuA 11 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=40560 # 1vkpA.321.162 read from T0547.t2k.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)A327 (1vkpA)D169 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1vkpA)G170 because T (delta_L) conformation "forbidden" or filtered. T0547 321 :SGRFVA 1vkpA 163 :GGSIHV T0547 329 :H 1vkpA 171 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=40562 # 1zedA.321.311 read from T0547.t2k.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)H329 (1zedA)H320 because H (helix) conformation "forbidden" or filtered. T0547 321 :SGRFVAAN 1zedA 312 :GGRIDHGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=40563 1mdaH expands to /projects/compbio/data/pdb/1mda.pdb.gz 1mdaH:# 1mdaH.321.325 read from T0547.t2k.many.frag # adding 1mdaH to template set # found chain 1mdaH in template set T0547 321 :SGRFVAANH 1mdaH 326 :ASDNYANSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=40564 # 1pq7A.321.179 read from T0547.t2k.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)R323 (1pq7A)G197 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 because of BadResidue code BAD_PEPTIDE in next template residue (1pq7A)I199 Warning: unaligning (T0547)V325 because of BadResidue code BAD_PEPTIDE at template residue (1pq7A)I199 Warning: unaligning (T0547)A327 (1pq7A)D201 because P (beta_P) conformation "forbidden" or filtered. T0547 321 :SG 1pq7A 195 :SG T0547 326 :A 1pq7A 200 :V T0547 328 :NH 1pq7A 202 :SS Number of specific fragments extracted= 3 number of extra gaps= 2 total=40567 # 1s9rA.321.213 read from T0547.t2k.many.frag # found chain 1s9rA in training set T0547 321 :SGRFVAANH 1s9rA 214 :GGDVFIYNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=40568 # 1k12A.321.128 read from T0547.t2k.many.frag # found chain 1k12A in template set Warning: unaligning (T0547)S321 (1k12A)I129 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1k12A)V134 because E (beta_S) conformation "forbidden" or filtered. T0547 322 :GRFV 1k12A 130 :GRYV T0547 327 :ANH 1k12A 135 :TYL Number of specific fragments extracted= 2 number of extra gaps= 2 total=40570 # 2basA.321.247 read from T0547.t2k.many.frag # found chain 2basA in template set Warning: unaligning (T0547)S321 (2basA)G224 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (2basA)G225 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (2basA)G230 because Y (epsilon') conformation "forbidden" or filtered. T0547 323 :RFVA 2basA 226 :RYFQ T0547 328 :NH 2basA 231 :YY Number of specific fragments extracted= 2 number of extra gaps= 2 total=40572 # 1rdqE.321.53 read from T0547.t2k.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)H329 (1rdqE)H62 because P (beta_P) conformation "forbidden" or filtered. T0547 321 :SGRFVAAN 1rdqE 54 :FGRVMLVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=40573 # 1qs1A.321.228 read from T0547.t2k.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)G322 (1qs1A)Y230 because P (beta_P) conformation "forbidden" or filtered. T0547 321 :S 1qs1A 229 :E T0547 323 :RFVAANH 1qs1A 231 :KMLIDNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40575 # 2fgqX.321.167 read from T0547.t2k.many.frag # found chain 2fgqX in training set Warning: unaligning (T0547)A326 (2fgqX)G173 because Y (epsilon') conformation "forbidden" or filtered. T0547 321 :SGRFV 2fgqX 168 :VGRYI T0547 327 :ANH 2fgqX 174 :GYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40577 # 1hq0A.321.145 read from T0547.t2k.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)S321 (1hq0A)G865 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1hq0A)C866 because P (beta_P) conformation "forbidden" or filtered. T0547 323 :RFVAANH 1hq0A 867 :TTIVARK Number of specific fragments extracted= 1 number of extra gaps= 1 total=40578 # 2bpa1.321.23 read from T0547.t2k.many.frag # found chain 2bpa1 in template set Warning: unaligning (T0547)G322 (2bpa1)G25 because G (3-10) conformation "forbidden" or filtered. T0547 321 :S 2bpa1 24 :I T0547 323 :RFVAANH 2bpa1 26 :RLITIST Number of specific fragments extracted= 2 number of extra gaps= 1 total=40580 # 1ywfA.321.181 read from T0547.t2k.many.frag # found chain 1ywfA in template set T0547 321 :SGRFVAANH 1ywfA 162 :AGKDRTGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40581 # 1oewA.321.79 read from T0547.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)R323 (1oewA)S82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1oewA)S83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1oewA)S85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1oewA)G86 because Y (epsilon') conformation "forbidden" or filtered. T0547 321 :SG 1oewA 80 :DG T0547 325 :V 1oewA 84 :S T0547 328 :NH 1oewA 87 :DV Number of specific fragments extracted= 3 number of extra gaps= 2 total=40584 # 1kjqA.321.187 read from T0547.t2k.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)G322 (1kjqA)G190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1kjqA)V194 because E (beta_S) conformation "forbidden" or filtered. T0547 321 :S 1kjqA 189 :A T0547 323 :RFV 1kjqA 191 :RVI T0547 327 :ANH 1kjqA 195 :EGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=40587 # 1zhxA.321.118 read from T0547.t2k.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)A327 (1zhxA)G121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1zhxA)K122 because Y (epsilon') conformation "forbidden" or filtered. T0547 321 :SGRFVA 1zhxA 115 :LGELFV T0547 329 :H 1zhxA 123 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=40589 # 1knwA.322.269 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 322 :GRFVAANHA 1knwA 270 :GRFLVAQSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=40590 # 7odcA.322.275 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G322 (7odcA)G276 because H (helix) conformation "forbidden" or filtered. T0547 323 :RFVAANHA 7odcA 277 :RYYVASAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=40591 # 1w6gA.322.265 read from T0547.t2k.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)G322 (1w6gA)L268 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1w6gA)S276 because Y (epsilon') conformation "forbidden" or filtered. T0547 323 :RFVAANH 1w6gA 269 :RPIINRA Number of specific fragments extracted= 1 number of extra gaps= 2 total=40592 # 1q7zA.322.405 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 322 :GRFVAANHA 1q7zA 406 :GRSLFNSAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=40593 # 1svpA.322.110 read from T0547.t2k.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)A326 (1svpA)M220 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1svpA)G224 because T (delta_L) conformation "forbidden" or filtered. T0547 322 :GRFV 1svpA 216 :GRPI T0547 327 :ANH 1svpA 221 :DNS Number of specific fragments extracted= 2 number of extra gaps= 2 total=40595 # 1v0wA.322.167 read from T0547.t2k.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)A327 (1v0wA)V176 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1v0wA)G178 because T (delta_L) conformation "forbidden" or filtered. T0547 322 :GRFVA 1v0wA 171 :SKILV T0547 328 :N 1v0wA 177 :D T0547 330 :A 1v0wA 179 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=40598 # 1u8xX.322.217 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)G322 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)R196 Warning: unaligning (T0547)R323 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)R196 Warning: unaligning (T0547)A326 (1u8xX)G199 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1u8xX)L200 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1u8xX)H202 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. T0547 324 :FV 1u8xX 197 :YY T0547 328 :N 1u8xX 201 :N Number of specific fragments extracted= 2 number of extra gaps= 3 total=40600 # 1zbxB.322.12 read from T0547.t2k.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)H329 (1zbxB)G499 because T (delta_L) conformation "forbidden" or filtered. T0547 322 :GRFVAAN 1zbxB 492 :PRFLVAD T0547 330 :A 1zbxB 500 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=40602 # 1tzlA.322.351 read from T0547.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)F324 (1tzlA)Y355 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1tzlA)Q359 because P (beta_P) conformation "forbidden" or filtered. T0547 322 :GR 1tzlA 353 :GS T0547 325 :VAA 1tzlA 356 :ITE T0547 329 :HA 1tzlA 360 :SL Number of specific fragments extracted= 3 number of extra gaps= 2 total=40605 # 1qs1A.322.229 read from T0547.t2k.many.frag # found chain 1qs1A in training set T0547 322 :GRFVAANHA 1qs1A 230 :YKMLIDNGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=40606 # 1t9hA.322.224 read from T0547.t2k.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)R323 (1t9hA)G217 because Y (epsilon') conformation "forbidden" or filtered. T0547 322 :G 1t9hA 216 :G T0547 324 :FVAANHA 1t9hA 218 :LVADTPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40608 # 1wckA.322.123 read from T0547.t2k.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A326 (1wckA)I128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. T0547 322 :GRFV 1wckA 124 :DTFV T0547 327 :ANH 1wckA 129 :SET Number of specific fragments extracted= 2 number of extra gaps= 2 total=40610 # 2bmoA.322.301 read from T0547.t2k.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 322 :GRFVAA 2bmoA 302 :NSFLTG T0547 330 :A 2bmoA 310 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=40612 # 1lvmA.322.159 read from T0547.t2k.many.frag # found chain 1lvmA in training set T0547 322 :GRFVAANHA 1lvmA 152 :GSPLVSTRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=40613 # 1mdaH.322.326 read from T0547.t2k.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)G322 (1mdaH)S327 because P (beta_P) conformation "forbidden" or filtered. T0547 323 :RFVAANHA 1mdaH 328 :DNYANSAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=40614 # 1s9rA.322.214 read from T0547.t2k.many.frag # found chain 1s9rA in training set Warning: unaligning (T0547)G322 (1s9rA)G215 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1s9rA)D216 because G (3-10) conformation "forbidden" or filtered. T0547 324 :FVAANHA 1s9rA 217 :VFIYNND Number of specific fragments extracted= 1 number of extra gaps= 1 total=40615 # 1zhxA.322.221 read from T0547.t2k.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)A326 (1zhxA)Q222 because E (beta_S) conformation "forbidden" or filtered. T0547 322 :GRFV 1zhxA 218 :KSYI T0547 327 :ANHA 1zhxA 223 :SSTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40617 1d3yA expands to /projects/compbio/data/pdb/1d3y.pdb.gz 1d3yA:# 1d3yA.322.76 read from T0547.t2k.many.frag # adding 1d3yA to template set # found chain 1d3yA in template set Warning: unaligning (T0547)G322 (1d3yA)G145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1d3yA)G150 because S (epsilon) conformation "forbidden" or filtered. T0547 323 :RFVA 1d3yA 146 :SSVV T0547 328 :NHA 1d3yA 151 :PLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=40619 # 1vkpA.322.163 read from T0547.t2k.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)N328 (1vkpA)G170 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1vkpA)G172 because T (delta_L) conformation "forbidden" or filtered. T0547 322 :GRFVAA 1vkpA 164 :GSIHVD T0547 329 :H 1vkpA 171 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=40621 1xksA expands to /projects/compbio/data/pdb/1xks.pdb.gz 1xksA:# 1xksA.322.49 read from T0547.t2k.many.frag # adding 1xksA to template set # found chain 1xksA in template set Warning: unaligning (T0547)A326 (1xksA)V118 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1xksA)C119 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1xksA)K120 because S (epsilon) conformation "forbidden" or filtered. T0547 322 :GRFV 1xksA 114 :WACL T0547 329 :HA 1xksA 121 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=40623 # 1rdqE.322.54 read from T0547.t2k.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)N328 (1rdqE)K61 because E (beta_S) conformation "forbidden" or filtered. T0547 322 :GRFVAA 1rdqE 55 :GRVMLV T0547 329 :HA 1rdqE 62 :HK Number of specific fragments extracted= 2 number of extra gaps= 1 total=40625 # 1pq7A.322.180 read from T0547.t2k.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)F324 because of BadResidue code BAD_PEPTIDE in next template residue (1pq7A)I199 Warning: unaligning (T0547)V325 because of BadResidue code BAD_PEPTIDE at template residue (1pq7A)I199 T0547 322 :GR 1pq7A 196 :GG T0547 326 :AANHA 1pq7A 200 :VDSSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=40627 # 2basA.322.248 read from T0547.t2k.many.frag # found chain 2basA in template set Warning: unaligning (T0547)G322 (2basA)G225 because P (beta_P) conformation "forbidden" or filtered. T0547 323 :RFVAANHA 2basA 226 :RYFQGYYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=40628 # 1oewA.322.80 read from T0547.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)A326 (1oewA)S85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1oewA)G86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1oewA)T90 T0547 322 :GRFV 1oewA 81 :GSSS T0547 328 :NH 1oewA 87 :DV Number of specific fragments extracted= 2 number of extra gaps= 2 total=40630 # 1k12A.322.129 read from T0547.t2k.many.frag # found chain 1k12A in template set Warning: unaligning (T0547)H329 (1k12A)L137 because D (zeta) conformation "forbidden" or filtered. T0547 322 :GRFVAAN 1k12A 130 :GRYVVTY T0547 330 :A 1k12A 138 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=40632 # 1hq0A.322.146 read from T0547.t2k.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)G322 (1hq0A)C866 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1hq0A)E874 because L (left) conformation "forbidden" or filtered. T0547 323 :RFVAANH 1hq0A 867 :TTIVARK Number of specific fragments extracted= 1 number of extra gaps= 2 total=40633 # 1c96A.322.654 read from T0547.t2k.many.frag # found chain 1c96A in template set Warning: unaligning (T0547)R323 (1c96A)R657 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1c96A)I660 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1c96A)T661 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1c96A)S663 because Y (epsilon') conformation "forbidden" or filtered. T0547 322 :G 1c96A 656 :G T0547 324 :FV 1c96A 658 :AI T0547 328 :N 1c96A 662 :K T0547 330 :A 1c96A 664 :F Number of specific fragments extracted= 4 number of extra gaps= 3 total=40637 # 1wrvA.322.248 read from T0547.t2k.many.frag # found chain 1wrvA in training set Warning: unaligning (T0547)V325 (1wrvA)F252 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1wrvA)G255 because Y (epsilon') conformation "forbidden" or filtered. T0547 322 :GRF 1wrvA 249 :DEV T0547 326 :AA 1wrvA 253 :MT T0547 329 :HA 1wrvA 256 :TA Number of specific fragments extracted= 3 number of extra gaps= 2 total=40640 1pguA expands to /projects/compbio/data/pdb/1pgu.pdb.gz 1pguA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1pguA.322.384 read from T0547.t2k.many.frag # adding 1pguA to template set # found chain 1pguA in template set Warning: unaligning (T0547)N328 (1pguA)W391 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1pguA)D393 because L (left) conformation "forbidden" or filtered. T0547 322 :GRFVAA 1pguA 385 :EYSSIS T0547 329 :H 1pguA 392 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=40642 # 1gq8A.322.155 read from T0547.t2k.many.frag # found chain 1gq8A in training set T0547 322 :GRFVAANHA 1gq8A 156 :VDFIFGNAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=40643 # 1knwA.323.270 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 323 :RFVAANHAV 1knwA 271 :RFLVAQSGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40644 # 7odcA.323.276 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 323 :RFVAANHAV 7odcA 277 :RYYVASAFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=40645 # 1w6gA.323.266 read from T0547.t2k.many.frag # found chain 1w6gA in training set T0547 323 :RFVAANHAV 1w6gA 269 :RPIINRASI Number of specific fragments extracted= 1 number of extra gaps= 0 total=40646 # 1q7zA.323.406 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 323 :RFVAANHAV 1q7zA 407 :RSLFNSAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40647 # 1svpA.323.111 read from T0547.t2k.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)A330 (1svpA)G224 because T (delta_L) conformation "forbidden" or filtered. T0547 323 :RFVAANH 1svpA 217 :RPIMDNS T0547 331 :V 1svpA 225 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=40649 # 1v0wA.323.168 read from T0547.t2k.many.frag # found chain 1v0wA in training set T0547 323 :RFVAANHAV 1v0wA 172 :KILVVDGQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=40650 # 1u8xX.323.218 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)R323 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)R196 Warning: unaligning (T0547)A326 (1u8xX)G199 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FV 1u8xX 197 :YY T0547 327 :ANHAV 1u8xX 200 :LNHFG Number of specific fragments extracted= 2 number of extra gaps= 2 total=40652 # 1wckA.323.124 read from T0547.t2k.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)H329 (1wckA)T131 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. T0547 323 :RFVAAN 1wckA 125 :TFVISE T0547 331 :V 1wckA 133 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=40654 # 1zbxB.323.13 read from T0547.t2k.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)H329 (1zbxB)G499 because T (delta_L) conformation "forbidden" or filtered. T0547 323 :RFVAAN 1zbxB 493 :RFLVAD T0547 330 :AV 1zbxB 500 :FL Number of specific fragments extracted= 2 number of extra gaps= 1 total=40656 # 1qs1A.323.230 read from T0547.t2k.many.frag # found chain 1qs1A in training set T0547 323 :RFVAANHAV 1qs1A 231 :KMLIDNGYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=40657 # 1mdaH.323.327 read from T0547.t2k.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)V331 (1mdaH)T336 because G (3-10) conformation "forbidden" or filtered. T0547 323 :RFVAANHA 1mdaH 328 :DNYANSAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=40658 # 1tzlA.323.352 read from T0547.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)R323 (1tzlA)S354 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1tzlA)T357 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1tzlA)S360 because P (beta_P) conformation "forbidden" or filtered. T0547 324 :FV 1tzlA 355 :YI T0547 327 :AN 1tzlA 358 :EQ T0547 330 :AV 1tzlA 361 :LV Number of specific fragments extracted= 3 number of extra gaps= 3 total=40661 # 2bmoA.323.302 read from T0547.t2k.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 323 :RFVAA 2bmoA 303 :SFLTG T0547 330 :AV 2bmoA 310 :AF Number of specific fragments extracted= 2 number of extra gaps= 1 total=40663 # 1t9hA.323.225 read from T0547.t2k.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)A326 (1t9hA)A220 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 (1t9hA)F225 because L (left) conformation "forbidden" or filtered. T0547 323 :RFV 1t9hA 217 :GLV T0547 327 :ANHA 1t9hA 221 :DTPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=40665 # 1lvmA.323.160 read from T0547.t2k.many.frag # found chain 1lvmA in training set T0547 323 :RFVAANHAV 1lvmA 153 :SPLVSTRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=40666 # 1xksA.323.50 read from T0547.t2k.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)A327 (1xksA)C119 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1xksA)K120 because S (epsilon) conformation "forbidden" or filtered. T0547 323 :RFVA 1xksA 115 :ACLV T0547 329 :HAV 1xksA 121 :EKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=40668 # 1hq0A.323.147 read from T0547.t2k.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)A330 (1hq0A)E874 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 (1hq0A)G875 because T (delta_L) conformation "forbidden" or filtered. T0547 323 :RFVAANH 1hq0A 867 :TTIVARK Number of specific fragments extracted= 1 number of extra gaps= 1 total=40669 # 1pguA.323.385 read from T0547.t2k.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)A327 (1pguA)S390 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1pguA)D392 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1pguA)D393 because L (left) conformation "forbidden" or filtered. T0547 323 :RFVA 1pguA 386 :YSSI T0547 328 :N 1pguA 391 :W T0547 331 :V 1pguA 394 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=40672 # 1si6X.323.76 read from T0547.t2k.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)A327 (1si6X)T81 because Y (epsilon') conformation "forbidden" or filtered. T0547 323 :RFVA 1si6X 77 :KNTI T0547 328 :NHAV 1si6X 82 :ETMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40674 # 1mg7A.323.294 read from T0547.t2k.many.frag # found chain 1mg7A in training set Warning: unaligning (T0547)R323 (1mg7A)G301 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1mg7A)F302 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1mg7A)Q305 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1mg7A)G308 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VA 1mg7A 303 :EV T0547 328 :NH 1mg7A 306 :QG T0547 331 :V 1mg7A 309 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=40677 # 1vkpA.323.164 read from T0547.t2k.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)A326 (1vkpA)V168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1vkpA)D169 because G (3-10) conformation "forbidden" or filtered. T0547 323 :RFV 1vkpA 165 :SIH T0547 328 :NHAV 1vkpA 170 :GEGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=40679 # 1wrvA.323.249 read from T0547.t2k.many.frag # found chain 1wrvA in training set Warning: unaligning (T0547)R323 (1wrvA)E250 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FVAANHAV 1wrvA 251 :VFMTGTAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=40680 # 1s9rA.323.215 read from T0547.t2k.many.frag # found chain 1s9rA in training set T0547 323 :RFVAANHAV 1s9rA 216 :DVFIYNNDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=40681 1olzA expands to /projects/compbio/data/pdb/1olz.pdb.gz 1olzA:# 1olzA.323.40 read from T0547.t2k.many.frag # adding 1olzA to template set # found chain 1olzA in template set Warning: unaligning (T0547)A327 (1olzA)A45 because Y (epsilon') conformation "forbidden" or filtered. T0547 323 :RFVA 1olzA 41 :LYIG T0547 328 :NHAV 1olzA 46 :REAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40683 # 1d3yA.323.77 read from T0547.t2k.many.frag # found chain 1d3yA in template set T0547 323 :RFVAANHAV 1d3yA 146 :SSVVGPLKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=40684 # 1oewA.323.81 read from T0547.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)A326 (1oewA)S85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1oewA)G86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1oewA)T90 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1oewA)T90 T0547 323 :RFV 1oewA 82 :SSS T0547 328 :NH 1oewA 87 :DV Number of specific fragments extracted= 2 number of extra gaps= 2 total=40686 # 1zhxA.323.222 read from T0547.t2k.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)A330 (1zhxA)G226 because T (delta_L) conformation "forbidden" or filtered. T0547 323 :RFVAANH 1zhxA 219 :SYIQSST T0547 331 :V 1zhxA 227 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=40688 # 1gq8A.323.156 read from T0547.t2k.many.frag # found chain 1gq8A in training set Warning: unaligning (T0547)R323 (1gq8A)D157 because L (left) conformation "forbidden" or filtered. T0547 324 :FVAANHAV 1gq8A 158 :FIFGNAAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=40689 # 1woqA.323.144 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N328 (1woqA)G150 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1woqA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0547 323 :RFVAA 1woqA 145 :LVITL T0547 329 :H 1woqA 151 :T T0547 331 :V 1woqA 153 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=40692 # 1g61A.323.152 read from T0547.t2k.many.frag # found chain 1g61A in training set Warning: unaligning (T0547)A327 (1g61A)T2157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1g61A)G2160 because Y (epsilon') conformation "forbidden" or filtered. T0547 323 :RFVA 1g61A 2153 :NAVV T0547 328 :NH 1g61A 2158 :NK T0547 331 :V 1g61A 2161 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=40695 # 1knwA.324.271 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 324 :FVAANHAVL 1knwA 272 :FLVAQSGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=40696 # 7odcA.324.277 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 324 :FVAANHAVL 7odcA 278 :YYVASAFTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=40697 # 1w6gA.324.267 read from T0547.t2k.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)A330 (1w6gA)S276 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FVAANH 1w6gA 270 :PIINRA T0547 331 :VL 1w6gA 277 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40699 # 1u8xX.324.219 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)H329 (1u8xX)H202 because L (left) conformation "forbidden" or filtered. T0547 324 :FVAAN 1u8xX 197 :YYGLN T0547 330 :AVL 1u8xX 203 :FGW Number of specific fragments extracted= 2 number of extra gaps= 1 total=40701 # 1wckA.324.125 read from T0547.t2k.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FVAANH 1wckA 126 :FVISET T0547 331 :VL 1wckA 133 :FY Number of specific fragments extracted= 2 number of extra gaps= 1 total=40703 # 1v0wA.324.169 read from T0547.t2k.many.frag # found chain 1v0wA in training set T0547 324 :FVAANHAVL 1v0wA 173 :ILVVDGQSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=40704 # 1svpA.324.112 read from T0547.t2k.many.frag # found chain 1svpA in template set T0547 324 :FVAANHAVL 1svpA 218 :PIMDNSGRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40705 # 1mdaH.324.328 read from T0547.t2k.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)V331 (1mdaH)T336 because G (3-10) conformation "forbidden" or filtered. T0547 324 :FVAANHA 1mdaH 329 :NYANSAG T0547 332 :L 1mdaH 337 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=40707 # 1q7zA.324.407 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 324 :FVAANHAVL 1q7zA 408 :SLFNSAKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=40708 # 2bmoA.324.303 read from T0547.t2k.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)A327 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 324 :FVA 2bmoA 304 :FLT T0547 330 :AVL 2bmoA 310 :AFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=40710 # 1mg7A.324.295 read from T0547.t2k.many.frag # found chain 1mg7A in training set Warning: unaligning (T0547)A327 (1mg7A)Q305 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FVA 1mg7A 302 :FEV T0547 328 :NHAVL 1mg7A 306 :QGGIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=40712 # 1si6X.324.77 read from T0547.t2k.many.frag # found chain 1si6X in training set T0547 324 :FVAANHAVL 1si6X 78 :NTITETMGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=40713 # 1hq0A.324.148 read from T0547.t2k.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)A330 (1hq0A)E874 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 (1hq0A)G875 because T (delta_L) conformation "forbidden" or filtered. T0547 324 :FVAANH 1hq0A 868 :TIVARK T0547 332 :L 1hq0A 876 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=40715 # 1tzlA.324.353 read from T0547.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)F324 (1tzlA)Y355 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1tzlA)T357 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)C364 T0547 325 :V 1tzlA 356 :I T0547 327 :ANHAV 1tzlA 358 :EQSLV Number of specific fragments extracted= 2 number of extra gaps= 3 total=40717 # 1wrvA.324.250 read from T0547.t2k.many.frag # found chain 1wrvA in training set Warning: unaligning (T0547)A327 (1wrvA)T254 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1wrvA)E259 because S (epsilon) conformation "forbidden" or filtered. T0547 324 :FVA 1wrvA 251 :VFM T0547 328 :NHAV 1wrvA 255 :GTAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=40719 # 1woqA.324.145 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)A327 (1woqA)L149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1woqA)G150 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1woqA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FVA 1woqA 146 :VIT T0547 329 :H 1woqA 151 :T T0547 331 :VL 1woqA 153 :IG Number of specific fragments extracted= 3 number of extra gaps= 2 total=40722 # 1oewA.324.82 read from T0547.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)A326 (1oewA)S85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1oewA)T90 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1oewA)T90 Warning: unaligning (T0547)L332 (1oewA)D91 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FV 1oewA 83 :SS T0547 327 :ANH 1oewA 86 :GDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=40724 # 1vjuA.324.61 read from T0547.t2k.many.frag # found chain 1vjuA in training set T0547 324 :FVAANHAVL 1vjuA 62 :AVIEKGGVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=40725 2bvcA expands to /projects/compbio/data/pdb/2bvc.pdb.gz 2bvcA:# 2bvcA.324.136 read from T0547.t2k.many.frag # adding 2bvcA to template set # found chain 2bvcA in template set T0547 324 :FVAANHAVL 2bvcA 129 :YFGAEAEFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=40726 # 1qs1A.324.231 read from T0547.t2k.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)A327 (1qs1A)D235 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1qs1A)Y238 because E (beta_S) conformation "forbidden" or filtered. T0547 324 :FVA 1qs1A 232 :MLI T0547 328 :NH 1qs1A 236 :NG T0547 331 :VL 1qs1A 239 :MV Number of specific fragments extracted= 3 number of extra gaps= 2 total=40729 # 1pguA.324.386 read from T0547.t2k.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)A326 (1pguA)I389 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1pguA)D393 because L (left) conformation "forbidden" or filtered. T0547 324 :FV 1pguA 387 :SS T0547 327 :ANH 1pguA 390 :SWD T0547 331 :VL 1pguA 394 :TL Number of specific fragments extracted= 3 number of extra gaps= 2 total=40732 # 1pguA.324.31 read from T0547.t2k.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)A327 (1pguA)Y35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1pguA)P36 because P (beta_P) conformation "forbidden" or filtered. T0547 324 :FVA 1pguA 32 :AIA T0547 329 :HAVL 1pguA 37 :CGKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=40734 # 1olzA.324.41 read from T0547.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)A327 (1olzA)A45 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1olzA)A48 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FVA 1olzA 42 :YIG T0547 328 :NH 1olzA 46 :RE T0547 331 :VL 1olzA 49 :VF Number of specific fragments extracted= 3 number of extra gaps= 2 total=40737 # 1zbxB.324.14 read from T0547.t2k.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)A326 (1zbxB)V496 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1zbxB)G499 because T (delta_L) conformation "forbidden" or filtered. T0547 324 :FV 1zbxB 494 :FL T0547 327 :AN 1zbxB 497 :AD T0547 330 :AVL 1zbxB 500 :FLI Number of specific fragments extracted= 3 number of extra gaps= 2 total=40740 # 1w61A.324.158 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)A330 (1w61A)G165 because S (epsilon) conformation "forbidden" or filtered. T0547 324 :FVAANH 1w61A 159 :VLDTPA T0547 331 :VL 1w61A 166 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40742 # 1nnfA.324.96 read from T0547.t2k.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)A326 (1nnfA)S99 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1nnfA)G100 because E (beta_S) conformation "forbidden" or filtered. T0547 324 :FV 1nnfA 97 :AL T0547 328 :NHAVL 1nnfA 101 :RSRVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40744 # 1zhxA.324.223 read from T0547.t2k.many.frag # found chain 1zhxA in training set T0547 324 :FVAANHAVL 1zhxA 220 :YIQSSTGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=40745 # 1gq8A.324.157 read from T0547.t2k.many.frag # found chain 1gq8A in training set Warning: unaligning (T0547)N328 (1gq8A)N162 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1gq8A)A164 because D (zeta) conformation "forbidden" or filtered. T0547 324 :FVAA 1gq8A 158 :FIFG T0547 329 :H 1gq8A 163 :A T0547 331 :VL 1gq8A 165 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=40748 # 1d3yA.324.78 read from T0547.t2k.many.frag # found chain 1d3yA in template set T0547 324 :FVAANHAVL 1d3yA 147 :SVVGPLKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=40749 # 1g61A.324.153 read from T0547.t2k.many.frag # found chain 1g61A in training set Warning: unaligning (T0547)A326 (1g61A)V2156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1g61A)T2157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1g61A)G2160 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FV 1g61A 2154 :AV T0547 328 :NH 1g61A 2158 :NK T0547 331 :VL 1g61A 2161 :CL Number of specific fragments extracted= 3 number of extra gaps= 2 total=40752 # 1knwA.325.272 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A330 (1knwA)G278 because E (beta_S) conformation "forbidden" or filtered. T0547 325 :VAANH 1knwA 273 :LVAQS T0547 331 :VLI 1knwA 279 :VLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=40754 # 7odcA.325.278 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A326 (7odcA)V280 because G (3-10) conformation "forbidden" or filtered. T0547 325 :V 7odcA 279 :Y T0547 327 :ANHAVLI 7odcA 281 :ASAFTLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40756 # 1w6gA.325.268 read from T0547.t2k.many.frag # found chain 1w6gA in training set T0547 325 :VAANHAVLI 1w6gA 271 :IINRASIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=40757 # 1wckA.325.126 read from T0547.t2k.many.frag # found chain 1wckA in training set T0547 325 :VAANHAVLI 1wckA 127 :VISETGFYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=40758 # 1u8xX.325.220 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)A326 (1u8xX)G199 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :V 1u8xX 198 :Y T0547 327 :ANHAVLI 1u8xX 200 :LNHFGWW Number of specific fragments extracted= 2 number of extra gaps= 1 total=40760 # 2bmoA.325.304 read from T0547.t2k.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)A327 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 325 :VA 2bmoA 305 :LT T0547 330 :AVLI 2bmoA 310 :AFRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40762 # 1mg7A.325.296 read from T0547.t2k.many.frag # found chain 1mg7A in training set Warning: unaligning (T0547)A327 (1mg7A)Q305 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VA 1mg7A 303 :EV T0547 328 :NHAVLI 1mg7A 306 :QGGILV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40764 # 1si6X.325.78 read from T0547.t2k.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)A326 (1si6X)I80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1si6X)T81 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :V 1si6X 79 :T T0547 328 :NHAVLI 1si6X 82 :ETMGLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=40766 # 1mdaH.325.329 read from T0547.t2k.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)N328 (1mdaH)S333 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 (1mdaH)T336 because G (3-10) conformation "forbidden" or filtered. T0547 325 :VAA 1mdaH 330 :YAN T0547 329 :HA 1mdaH 334 :AG T0547 332 :LI 1mdaH 337 :EV Number of specific fragments extracted= 3 number of extra gaps= 2 total=40769 # 2bvcA.325.137 read from T0547.t2k.many.frag # found chain 2bvcA in template set T0547 325 :VAANHAVLI 2bvcA 130 :FGAEAEFYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=40770 # 1v0wA.325.170 read from T0547.t2k.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)H329 (1v0wA)G178 because T (delta_L) conformation "forbidden" or filtered. T0547 325 :VAAN 1v0wA 174 :LVVD T0547 330 :AVLI 1v0wA 179 :QSAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=40772 # 1tzlA.325.354 read from T0547.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)C364 Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)C364 T0547 325 :VAANHAV 1tzlA 356 :ITEQSLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=40773 # 1woqA.325.146 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N328 (1woqA)G150 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1woqA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VAA 1woqA 147 :ITL T0547 329 :H 1woqA 151 :T T0547 331 :VLI 1woqA 153 :IGS Number of specific fragments extracted= 3 number of extra gaps= 2 total=40776 # 1qs1A.325.232 read from T0547.t2k.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)A327 (1qs1A)D235 because P (beta_P) conformation "forbidden" or filtered. T0547 325 :VA 1qs1A 233 :LI T0547 328 :NHAVLI 1qs1A 236 :NGYMVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=40778 # 1uc2A.325.198 read from T0547.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)H329 (1uc2A)H203 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VAAN 1uc2A 199 :GSGN T0547 331 :VLI 1uc2A 205 :LEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40780 # 1h2cA.325.13 read from T0547.t2k.many.frag # found chain 1h2cA in training set Warning: unaligning (T0547)A326 because first residue in template chain is (1h2cA)V69 Warning: unaligning (T0547)A330 (1h2cA)F73 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANH 1h2cA 70 :SSA T0547 331 :VLI 1h2cA 74 :ILE Number of specific fragments extracted= 2 number of extra gaps= 1 total=40782 # 1zn6A.325.100 read from T0547.t2k.many.frag # found chain 1zn6A in training set Warning: unaligning (T0547)A327 (1zn6A)A103 because L (left) conformation "forbidden" or filtered. T0547 325 :VA 1zn6A 101 :AK T0547 328 :NHAVLI 1zn6A 104 :QHCIIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=40784 # 1svpA.325.113 read from T0547.t2k.many.frag # found chain 1svpA in template set T0547 325 :VAANHAVLI 1svpA 219 :IMDNSGRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40785 # 1oewA.325.83 read from T0547.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1oewA)T90 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1oewA)T90 Warning: unaligning (T0547)L332 (1oewA)D91 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VAANH 1oewA 84 :SSGDV T0547 333 :I 1oewA 92 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=40787 # 2fn0A.325.317 read from T0547.t2k.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)A327 (2fn0A)G317 because S (epsilon) conformation "forbidden" or filtered. T0547 325 :VA 2fn0A 315 :QR T0547 328 :NHAVLI 2fn0A 318 :SVQHLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=40789 # 1vjuA.325.62 read from T0547.t2k.many.frag # found chain 1vjuA in training set Warning: unaligning (T0547)N328 (1vjuA)K66 because E (beta_S) conformation "forbidden" or filtered. T0547 325 :VAA 1vjuA 63 :VIE T0547 329 :HAVLI 1vjuA 67 :GGVNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=40791 # 1xdnA.325.152 read from T0547.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)A326 (1xdnA)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :V 1xdnA 200 :Y T0547 327 :ANHAVLI 1xdnA 202 :PELHFFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40793 # 1wrvA.325.251 read from T0547.t2k.many.frag # found chain 1wrvA in training set Warning: unaligning (T0547)N328 (1wrvA)G255 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VAA 1wrvA 252 :FMT T0547 329 :HAVLI 1wrvA 256 :TAAEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40795 # 1olzA.325.42 read from T0547.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)A327 (1olzA)A45 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1olzA)E47 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1olzA)A48 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VA 1olzA 43 :IG T0547 328 :N 1olzA 46 :R T0547 331 :VLI 1olzA 49 :VFA Number of specific fragments extracted= 3 number of extra gaps= 2 total=40798 # 1w61A.325.159 read from T0547.t2k.many.frag # found chain 1w61A in template set T0547 325 :VAANHAVLI 1w61A 160 :LDTPAGLVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=40799 # 1pguA.325.387 read from T0547.t2k.many.frag # found chain 1pguA in template set T0547 325 :VAANHAVLI 1pguA 388 :SISWDDTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=40800 # 1wuiL.325.456 read from T0547.t2k.many.frag # found chain 1wuiL in training set Warning: unaligning (T0547)A330 (1wuiL)G480 because S (epsilon) conformation "forbidden" or filtered. T0547 325 :VAANH 1wuiL 475 :VNAPR T0547 331 :VLI 1wuiL 481 :GLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=40802 1ecrA expands to /projects/compbio/data/pdb/1ecr.pdb.gz 1ecrA:# 1ecrA.325.26 read from T0547.t2k.many.frag # adding 1ecrA to template set # found chain 1ecrA in template set Warning: unaligning (T0547)H329 (1ecrA)H31 because E (beta_S) conformation "forbidden" or filtered. T0547 325 :VAAN 1ecrA 27 :HLEQ T0547 330 :AVLI 1ecrA 32 :KLLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40804 # 1nnfA.325.97 read from T0547.t2k.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)V325 (1nnfA)L98 because G (3-10) conformation "forbidden" or filtered. T0547 326 :AANHAVLI 1nnfA 99 :SGRSRVVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=40805 # 1rcqA.325.227 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A330 (1rcqA)M233 because P (beta_P) conformation "forbidden" or filtered. T0547 325 :VAANH 1rcqA 228 :RLRPV T0547 331 :VLI 1rcqA 234 :TLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=40807 # 1knwA.326.273 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 326 :AANHAVLIA 1knwA 274 :VAQSGVLIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=40808 # 7odcA.326.279 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 326 :AANHAVLIA 7odcA 280 :VASAFTLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40809 # 1wckA.326.127 read from T0547.t2k.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :AANH 1wckA 128 :ISET T0547 331 :VLIA 1wckA 133 :FYKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=40811 # 1w6gA.326.269 read from T0547.t2k.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)A330 (1w6gA)S276 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I333 (1w6gA)E279 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :AANH 1w6gA 272 :INRA T0547 331 :VL 1w6gA 277 :IA T0547 334 :A 1w6gA 280 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=40814 # 1u8xX.326.221 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)A326 (1u8xX)G199 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1u8xX)N201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. T0547 327 :A 1u8xX 200 :L T0547 329 :H 1u8xX 202 :H T0547 331 :VLIA 1u8xX 204 :GWWT Number of specific fragments extracted= 3 number of extra gaps= 3 total=40817 # 2bvcA.326.138 read from T0547.t2k.many.frag # found chain 2bvcA in template set T0547 326 :AANHAVLIA 2bvcA 131 :GAEAEFYIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=40818 # 1si6X.326.79 read from T0547.t2k.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)A327 (1si6X)T81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1si6X)V88 because E (beta_S) conformation "forbidden" or filtered. T0547 326 :A 1si6X 80 :I T0547 328 :NHAVLI 1si6X 82 :ETMGLT Number of specific fragments extracted= 2 number of extra gaps= 2 total=40820 # 1mg7A.326.297 read from T0547.t2k.many.frag # found chain 1mg7A in training set Warning: unaligning (T0547)A327 (1mg7A)Q305 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1mg7A)G308 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :A 1mg7A 304 :V T0547 328 :NH 1mg7A 306 :QG T0547 331 :VLIA 1mg7A 309 :ILVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=40823 # 2bmoA.326.305 read from T0547.t2k.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)A327 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 326 :A 2bmoA 306 :T T0547 330 :AVLIA 2bmoA 310 :AFRVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=40825 # 1ecrA.326.27 read from T0547.t2k.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)N328 (1ecrA)Q30 because G (3-10) conformation "forbidden" or filtered. T0547 326 :AA 1ecrA 28 :LE T0547 329 :HAVLIA 1ecrA 31 :HKLLVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40827 # 1zn6A.326.101 read from T0547.t2k.many.frag # found chain 1zn6A in training set Warning: unaligning (T0547)A326 (1zn6A)K102 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1zn6A)A103 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1zn6A)C106 because Y (epsilon') conformation "forbidden" or filtered. T0547 328 :NH 1zn6A 104 :QH T0547 331 :VLIA 1zn6A 107 :IIPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=40829 # 2ae0X.326.264 read from T0547.t2k.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)A326 (2ae0X)I265 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (2ae0X)G268 because T (delta_L) conformation "forbidden" or filtered. T0547 327 :AN 2ae0X 266 :PP T0547 330 :AVLIA 2ae0X 269 :TTLLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=40831 # 1rcqA.326.228 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :AANHAVLI 1rcqA 229 :LRPVMTLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=40832 # 1io1A.326.170 read from T0547.t2k.many.frag # found chain 1io1A in template set Warning: unaligning (T0547)A326 (1io1A)D223 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1io1A)G227 because T (delta_L) conformation "forbidden" or filtered. T0547 327 :ANH 1io1A 224 :DTT T0547 331 :VLIA 1io1A 228 :KYYA Number of specific fragments extracted= 2 number of extra gaps= 2 total=40834 # 1uc2A.326.199 read from T0547.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)A326 (1uc2A)S200 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1uc2A)N202 because G (3-10) conformation "forbidden" or filtered. T0547 327 :A 1uc2A 201 :G T0547 329 :HAVLIA 1uc2A 203 :HFLEVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=40836 # 1qs1A.326.233 read from T0547.t2k.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)A327 (1qs1A)D235 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1qs1A)G237 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1qs1A)V242 because N (gamma') conformation "forbidden" or filtered. T0547 326 :A 1qs1A 234 :I T0547 328 :N 1qs1A 236 :N T0547 330 :AVLI 1qs1A 238 :YMVH Number of specific fragments extracted= 3 number of extra gaps= 3 total=40839 # 1h2cA.326.14 read from T0547.t2k.many.frag # found chain 1h2cA in training set Warning: unaligning (T0547)A326 because first residue in template chain is (1h2cA)V69 Warning: unaligning (T0547)A330 (1h2cA)F73 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANH 1h2cA 70 :SSA T0547 331 :VLIA 1h2cA 74 :ILEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40841 # 1xdnA.326.153 read from T0547.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)A326 (1xdnA)S201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1xdnA)E203 because P (beta_P) conformation "forbidden" or filtered. T0547 327 :A 1xdnA 202 :P T0547 329 :HAVLIA 1xdnA 204 :LHFFAF Number of specific fragments extracted= 2 number of extra gaps= 2 total=40843 # 2fn0A.326.318 read from T0547.t2k.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)A326 (2fn0A)R316 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (2fn0A)G317 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (2fn0A)Q320 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 2fn0A 318 :SV T0547 331 :VLIA 2fn0A 321 :HLGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=40845 # 1pguA.326.388 read from T0547.t2k.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)A334 (1pguA)V397 because E (beta_S) conformation "forbidden" or filtered. T0547 326 :AANHAVLI 1pguA 389 :ISWDDTLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=40846 # 1mdaH.326.330 read from T0547.t2k.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)L332 (1mdaH)E337 because L (left) conformation "forbidden" or filtered. T0547 326 :AANHAV 1mdaH 331 :ANSAGT T0547 333 :IA 1mdaH 338 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=40848 # 1r6xA.326.212 read from T0547.t2k.many.frag # found chain 1r6xA in training set Warning: unaligning (T0547)H329 (1r6xA)A217 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1r6xA)H222 because D (zeta) conformation "forbidden" or filtered. T0547 326 :AAN 1r6xA 214 :EAN T0547 330 :AVLI 1r6xA 218 :KVLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=40850 # 1svpA.326.114 read from T0547.t2k.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)A334 (1svpA)A228 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :AANHAVLI 1svpA 220 :MDNSGRVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=40851 # 1woqA.326.147 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)A330 (1woqA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :AANH 1woqA 148 :TLGT T0547 331 :VLIA 1woqA 153 :IGSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=40853 # 1oz2A.326.53 read from T0547.t2k.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)A327 because of BadResidue code BAD_PEPTIDE in next template residue (1oz2A)P252 Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE at template residue (1oz2A)P252 T0547 326 :A 1oz2A 250 :Q T0547 329 :HAVLIA 1oz2A 253 :SMYFIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=40855 # 1xjvA.326.152 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)N328 (1xjvA)Q160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1xjvA)F162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :AA 1xjvA 158 :PM T0547 329 :H 1xjvA 161 :Y T0547 331 :VLI 1xjvA 163 :DLT Number of specific fragments extracted= 3 number of extra gaps= 3 total=40858 # 1tzlA.326.355 read from T0547.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)A326 (1tzlA)T357 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)C364 Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)C364 T0547 327 :ANHAV 1tzlA 358 :EQSLV T0547 334 :A 1tzlA 365 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=40860 # 1v0wA.326.171 read from T0547.t2k.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)A327 (1v0wA)V176 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1v0wA)G178 because T (delta_L) conformation "forbidden" or filtered. T0547 326 :A 1v0wA 175 :V T0547 328 :N 1v0wA 177 :D T0547 330 :AVLIA 1v0wA 179 :QSALT Number of specific fragments extracted= 3 number of extra gaps= 2 total=40863 # 1uscA.326.111 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)A327 (1uscA)G113 because T (delta_L) conformation "forbidden" or filtered. T0547 326 :A 1uscA 112 :E T0547 328 :NHAVLIA 1uscA 114 :AYAAYEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=40865 # 1oewA.326.84 read from T0547.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)A326 (1oewA)S85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1oewA)G86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1oewA)T90 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1oewA)T90 Warning: unaligning (T0547)L332 (1oewA)D91 because Y (epsilon') conformation "forbidden" or filtered. T0547 328 :NH 1oewA 87 :DV T0547 333 :IA 1oewA 92 :TV Number of specific fragments extracted= 2 number of extra gaps= 2 total=40867 # 1knwA.327.274 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 327 :ANHAVLIAP 1knwA 275 :AQSGVLITQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=40868 # 7odcA.327.280 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 327 :ANHAVLIAP 7odcA 281 :ASAFTLAVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=40869 # 1wckA.327.128 read from T0547.t2k.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1wckA)I136 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANH 1wckA 129 :SET T0547 331 :VLI 1wckA 133 :FYK Number of specific fragments extracted= 2 number of extra gaps= 2 total=40871 # 1u8xX.327.222 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)V331 (1u8xX)G204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHA 1u8xX 200 :LNHF T0547 332 :LIA 1u8xX 205 :WWT Number of specific fragments extracted= 2 number of extra gaps= 2 total=40873 # 2bvcA.327.139 read from T0547.t2k.many.frag # found chain 2bvcA in template set T0547 327 :ANHAVLIAP 2bvcA 132 :AEAEFYIFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=40874 # 1io1A.327.171 read from T0547.t2k.many.frag # found chain 1io1A in template set Warning: unaligning (T0547)H329 (1io1A)T226 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1io1A)G227 because T (delta_L) conformation "forbidden" or filtered. T0547 327 :AN 1io1A 224 :DT T0547 331 :VLIAP 1io1A 228 :KYYAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=40876 # 1rcqA.327.229 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A327 (1rcqA)R230 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 1rcqA 231 :PVMTLES Number of specific fragments extracted= 1 number of extra gaps= 2 total=40877 # 1w6gA.327.270 read from T0547.t2k.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)P335 (1w6gA)V281 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVLIA 1w6gA 273 :NRASIAEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=40878 # 2ae0X.327.265 read from T0547.t2k.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)H329 (2ae0X)G268 because T (delta_L) conformation "forbidden" or filtered. T0547 327 :AN 2ae0X 266 :PP T0547 330 :AVLIAP 2ae0X 269 :TTLLAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=40880 # 1xjvA.327.153 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A327 (1xjvA)M159 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1xjvA)F162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1xjvA 160 :QY T0547 331 :VLI 1xjvA 163 :DLT Number of specific fragments extracted= 2 number of extra gaps= 3 total=40882 # 1si6X.327.80 read from T0547.t2k.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)A327 (1si6X)T81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1si6X)Y89 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 1si6X 82 :ETMGLTV Number of specific fragments extracted= 1 number of extra gaps= 2 total=40883 # 1ecrA.327.28 read from T0547.t2k.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)P335 (1ecrA)R37 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVLIA 1ecrA 29 :EQHKLLVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=40884 1l1oC expands to /projects/compbio/data/pdb/1l1o.pdb.gz 1l1oC:# 1l1oC.327.23 read from T0547.t2k.many.frag # adding 1l1oC to template set # found chain 1l1oC in template set Warning: unaligning (T0547)A330 (1l1oC)F462 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANH 1l1oC 459 :PDY T0547 331 :VLIA 1l1oC 463 :SSVA Number of specific fragments extracted= 2 number of extra gaps= 2 total=40886 # 1woqA.327.148 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)A330 (1woqA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0547 327 :ANH 1woqA 149 :LGT T0547 331 :VLIAP 1woqA 153 :IGSAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=40888 # 1oz2A.327.54 read from T0547.t2k.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)A327 because of BadResidue code BAD_PEPTIDE in next template residue (1oz2A)P252 Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE at template residue (1oz2A)P252 Warning: unaligning (T0547)P335 (1oz2A)T259 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1oz2A 253 :SMYFIL Number of specific fragments extracted= 1 number of extra gaps= 2 total=40889 # 1uscA.327.112 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVLIA 1uscA 113 :GAYAAYEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=40890 # 2fn0A.327.319 read from T0547.t2k.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)P335 (2fn0A)G325 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVLIA 2fn0A 317 :GSVQHLGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=40891 # 1t0tV.327.135 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)P335 (1t0tV)Y144 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVLIA 1t0tV 136 :PKTNYICF Number of specific fragments extracted= 1 number of extra gaps= 1 total=40892 1uadC expands to /projects/compbio/data/pdb/1uad.pdb.gz 1uadC:# 1uadC.327.54 read from T0547.t2k.many.frag # adding 1uadC to template set # found chain 1uadC in template set Warning: unaligning (T0547)P335 (1uadC)R63 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVLIA 1uadC 55 :MSASKIVC Number of specific fragments extracted= 1 number of extra gaps= 1 total=40893 # 1zn6A.327.102 read from T0547.t2k.many.frag # found chain 1zn6A in training set Warning: unaligning (T0547)A327 (1zn6A)A103 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1zn6A)C106 because Y (epsilon') conformation "forbidden" or filtered. T0547 328 :NH 1zn6A 104 :QH T0547 331 :VLIAP 1zn6A 107 :IIPAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=40895 1br9 expands to /projects/compbio/data/pdb/1br9.pdb.gz 1br9:Warning: there is no chain 1br9 will retry with 1br9A # 1br9.327.13 read from T0547.t2k.many.frag # adding 1br9 to template set # found chain 1br9 in template set Warning: unaligning (T0547)A334 (1br9)A21 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVLI 1br9 14 :NADVVIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=40896 # 2bmoA.327.306 read from T0547.t2k.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 327 :A 2bmoA 307 :G T0547 330 :AVLIAP 2bmoA 310 :AFRVWN Number of specific fragments extracted= 2 number of extra gaps= 1 total=40898 # 1uc2A.327.200 read from T0547.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)A330 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uc2A)V209 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANH 1uc2A 201 :GNH T0547 331 :VLIA 1uc2A 205 :LEVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=40900 # 1mdaH.327.331 read from T0547.t2k.many.frag # found chain 1mdaH in template set T0547 327 :ANHAVLIAP 1mdaH 332 :NSAGTEVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=40901 1bvoA expands to /projects/compbio/data/pdb/1bvo.pdb.gz 1bvoA:# 1bvoA.327.139 read from T0547.t2k.many.frag # adding 1bvoA to template set # found chain 1bvoA in template set Warning: unaligning (T0547)A330 (1bvoA)V190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1bvoA)F194 because D (zeta) conformation "forbidden" or filtered. T0547 327 :ANH 1bvoA 187 :LNA T0547 331 :VLI 1bvoA 191 :RLC T0547 335 :P 1bvoA 195 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=40904 # 1oewA.327.85 read from T0547.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)A327 (1oewA)G86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1oewA)T90 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1oewA)T90 Warning: unaligning (T0547)L332 (1oewA)D91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1oewA)S94 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1oewA 87 :DV T0547 333 :IA 1oewA 92 :TV Number of specific fragments extracted= 2 number of extra gaps= 3 total=40906 # 1qs1A.327.234 read from T0547.t2k.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)H329 (1qs1A)G237 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1qs1A)Y238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1qs1A)V242 because N (gamma') conformation "forbidden" or filtered. T0547 327 :AN 1qs1A 235 :DN T0547 331 :VLI 1qs1A 239 :MVH T0547 335 :P 1qs1A 243 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=40909 # 1pguA.327.389 read from T0547.t2k.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)A330 (1pguA)D393 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1pguA)V397 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1pguA)N398 because L (left) conformation "forbidden" or filtered. T0547 327 :ANH 1pguA 390 :SWD T0547 331 :VLI 1pguA 394 :TLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=40911 1ieaB expands to /projects/compbio/data/pdb/1iea.pdb.gz 1ieaB:WARNING: atom 1661 has residue number 4 < previous residue 16L in 1ieaB # 1ieaB.327.139 read from T0547.t2k.many.frag # adding 1ieaB to template set # found chain 1ieaB in template set Warning: unaligning (T0547)A327 (1ieaB)E110 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1ieaB)H111 because Y (epsilon') conformation "forbidden" or filtered. T0547 329 :HAVLIAP 1ieaB 112 :HNLLVCS Number of specific fragments extracted= 1 number of extra gaps= 1 total=40912 # 1xdnA.327.154 read from T0547.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)A330 (1xdnA)H205 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xdnA)D210 because Y (epsilon') conformation "forbidden" or filtered. T0547 327 :ANH 1xdnA 202 :PEL T0547 331 :VLIA 1xdnA 206 :FFAF Number of specific fragments extracted= 2 number of extra gaps= 2 total=40914 # 1knwA.328.275 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 328 :NHAVLIAPV 1knwA 276 :QSGVLITQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40915 # 7odcA.328.281 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 328 :NHAVLIAPV 7odcA 282 :SAFTLAVNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=40916 # 1wckA.328.129 read from T0547.t2k.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1wckA 130 :ET T0547 331 :VLIA 1wckA 133 :FYKI T0547 336 :V 1wckA 138 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=40919 # 1rcqA.328.230 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A330 (1rcqA)M233 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1rcqA 231 :PV T0547 331 :VLI 1rcqA 234 :TLE T0547 336 :V 1rcqA 239 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=40922 # 1u8xX.328.223 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)N328 (1u8xX)N201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 1u8xX 202 :H T0547 331 :VLIA 1u8xX 204 :GWWT T0547 336 :V 1u8xX 209 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=40925 # 1l1oC.328.24 read from T0547.t2k.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)A330 (1l1oC)F462 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1l1oC)S464 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1l1oC 460 :DY T0547 331 :V 1l1oC 463 :S T0547 333 :IA 1l1oC 465 :VA T0547 336 :V 1l1oC 468 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=40929 # 1io1A.328.172 read from T0547.t2k.many.frag # found chain 1io1A in template set T0547 328 :NHAVLIAPV 1io1A 225 :TTGKYYAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40930 # 2bvcA.328.140 read from T0547.t2k.many.frag # found chain 2bvcA in template set Warning: unaligning (T0547)A334 (2bvcA)F139 because P (beta_P) conformation "forbidden" or filtered. T0547 328 :NHAVLI 2bvcA 133 :EAEFYI T0547 335 :PV 2bvcA 140 :DS Number of specific fragments extracted= 2 number of extra gaps= 1 total=40932 # 1xjvA.328.154 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A330 (1xjvA)F162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1xjvA 160 :QY T0547 331 :VLIA 1xjvA 163 :DLTC T0547 336 :V 1xjvA 168 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=40935 # 2ae0X.328.266 read from T0547.t2k.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)H329 (2ae0X)G268 because T (delta_L) conformation "forbidden" or filtered. T0547 328 :N 2ae0X 267 :P T0547 330 :AVLIAPV 2ae0X 269 :TTLLAEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40937 # 1uscA.328.113 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)A330 (1uscA)A116 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 (1uscA)A117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1uscA 114 :AY T0547 332 :LIA 1uscA 118 :YEL T0547 336 :V 1uscA 122 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=40940 # 1w6gA.328.271 read from T0547.t2k.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)A330 (1w6gA)S276 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1w6gA)V281 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1w6gA 274 :RA T0547 331 :VLIA 1w6gA 277 :IAEM T0547 336 :V 1w6gA 282 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=40943 # 1oz2A.328.55 read from T0547.t2k.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE at template residue (1oz2A)P252 Warning: unaligning (T0547)P335 (1oz2A)T259 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1oz2A 253 :SMYFIL T0547 336 :V 1oz2A 260 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=40945 # 1ecrA.328.29 read from T0547.t2k.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)P335 (1ecrA)R37 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 1ecrA 30 :QHKLLVA T0547 336 :V 1ecrA 38 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=40947 # 1woqA.328.149 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N328 (1woqA)G150 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1woqA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0547 329 :H 1woqA 151 :T T0547 331 :VLIAPV 1woqA 153 :IGSAFI Number of specific fragments extracted= 2 number of extra gaps= 2 total=40949 # 2fn0A.328.320 read from T0547.t2k.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)P335 (2fn0A)G325 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 2fn0A 318 :SVQHLGS T0547 336 :V 2fn0A 326 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=40951 # 1br9.328.14 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 1br9 15 :ADVVIRA T0547 336 :V 1br9 23 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=40953 # 1bvoA.328.140 read from T0547.t2k.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)N328 (1bvoA)N188 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1bvoA)F194 because D (zeta) conformation "forbidden" or filtered. T0547 329 :HAVLI 1bvoA 189 :AVRLC T0547 335 :PV 1bvoA 195 :QV Number of specific fragments extracted= 2 number of extra gaps= 2 total=40955 # 1lmiA.328.19 read from T0547.t2k.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)N328 (1lmiA)G20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1lmiA)Q21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 1lmiA 22 :VVLGW T0547 336 :V 1lmiA 28 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=40957 # 1uadC.328.55 read from T0547.t2k.many.frag # found chain 1uadC in template set Warning: unaligning (T0547)N328 (1uadC)S56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uadC)R63 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1uadC 57 :ASKIVC T0547 336 :V 1uadC 64 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=40959 # 1si6X.328.81 read from T0547.t2k.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)P335 (1si6X)Y89 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 1si6X 82 :ETMGLTV T0547 336 :V 1si6X 90 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=40961 # 2aneA.328.75 read from T0547.t2k.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)N328 (2aneA)F69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 2aneA 70 :TVGTVA T0547 336 :V 2aneA 77 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=40963 1n7zA expands to /projects/compbio/data/pdb/1n7z.pdb.gz 1n7zA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1n7zA.328.124 read from T0547.t2k.many.frag # adding 1n7zA to template set # found chain 1n7zA in template set Warning: unaligning (T0547)N328 (1n7zA)G125 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1n7zA 126 :AGWLVY T0547 336 :V 1n7zA 133 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=40965 # 1t0tV.328.136 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)P335 (1t0tV)Y144 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 1t0tV 137 :KTNYICF T0547 336 :V 1t0tV 145 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=40967 # 1mdaH.328.332 read from T0547.t2k.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)N328 (1mdaH)S333 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 (1mdaH)T336 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1mdaH)E337 because L (left) conformation "forbidden" or filtered. T0547 329 :HA 1mdaH 334 :AG T0547 333 :IAPV 1mdaH 338 :VLDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=40969 # 1ieaB.328.140 read from T0547.t2k.many.frag # found chain 1ieaB in template set Warning: unaligning (T0547)N328 (1ieaB)H111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1ieaB)C117 because N (gamma') conformation "forbidden" or filtered. T0547 329 :HAVLI 1ieaB 112 :HNLLV T0547 335 :PV 1ieaB 118 :SV Number of specific fragments extracted= 2 number of extra gaps= 2 total=40971 1te0A expands to /projects/compbio/data/pdb/1te0.pdb.gz 1te0A:# 1te0A.328.16 read from T0547.t2k.many.frag # adding 1te0A to template set # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 T0547 328 :NHAVL 1te0A 53 :RAAPA T0547 335 :PV 1te0A 60 :NV Number of specific fragments extracted= 2 number of extra gaps= 1 total=40973 # 1oewA.328.86 read from T0547.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1oewA)T90 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1oewA)T90 Warning: unaligning (T0547)L332 (1oewA)D91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1oewA)S94 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1oewA 87 :DV T0547 333 :IA 1oewA 92 :TV T0547 336 :V 1oewA 95 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=40976 # 1xdnA.328.155 read from T0547.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)A330 (1xdnA)H205 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xdnA)D210 because Y (epsilon') conformation "forbidden" or filtered. T0547 328 :NH 1xdnA 203 :EL T0547 331 :VLIA 1xdnA 206 :FFAF T0547 336 :V 1xdnA 211 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=40979 # 1uc2A.328.201 read from T0547.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)N328 (1uc2A)N202 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1uc2A)H203 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uc2A)V209 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1uc2A 205 :LEVQ T0547 336 :V 1uc2A 210 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=40981 # 1knwA.329.276 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 329 :HAVLIAPVL 1knwA 277 :SGVLITQVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=40982 # 7odcA.329.282 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 329 :HAVLIAPVL 7odcA 283 :AFTLAVNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=40983 # 1wckA.329.130 read from T0547.t2k.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1wckA 131 :TGFYKI T0547 336 :VL 1wckA 138 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=40985 # 1rcqA.329.231 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1rcqA 232 :VMTLES T0547 336 :VL 1rcqA 239 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=40987 # 1l1oC.329.25 read from T0547.t2k.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)A330 (1l1oC)F462 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1l1oC)S464 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 1l1oC 461 :Y T0547 331 :V 1l1oC 463 :S T0547 333 :IA 1l1oC 465 :VA T0547 336 :VL 1l1oC 468 :VV Number of specific fragments extracted= 4 number of extra gaps= 3 total=40991 # 1u8xX.329.224 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)H329 (1u8xX)H202 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1u8xX 204 :GWWT T0547 336 :VL 1u8xX 209 :IQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=40993 # 1uscA.329.114 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1uscA 115 :YAAYEL T0547 336 :VL 1uscA 122 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=40995 # 1xjvA.329.155 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A330 (1xjvA)F162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 1xjvA 161 :Y T0547 331 :VLI 1xjvA 163 :DLT T0547 336 :VL 1xjvA 168 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=40998 # 2bvcA.329.141 read from T0547.t2k.many.frag # found chain 2bvcA in template set T0547 329 :HAVLIAPVL 2bvcA 134 :AEFYIFDSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=40999 # 1br9.329.15 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1br9 16 :DVVIRA T0547 336 :VL 1br9 23 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41001 # 1lmiA.329.20 read from T0547.t2k.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)H329 (1lmiA)Q21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIA 1lmiA 22 :VVLGW T0547 336 :V 1lmiA 28 :V Number of specific fragments extracted= 2 number of extra gaps= 3 total=41003 # 2aneA.329.76 read from T0547.t2k.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 2aneA 70 :TVGTVA T0547 336 :VL 2aneA 77 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=41005 # 1io1A.329.173 read from T0547.t2k.many.frag # found chain 1io1A in template set T0547 329 :HAVLIAPVL 1io1A 226 :TGKYYAKVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=41006 # 1oz2A.329.56 read from T0547.t2k.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)P335 (1oz2A)T259 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1oz2A 253 :SMYFIL T0547 336 :VL 1oz2A 260 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=41008 # 1bvoA.329.141 read from T0547.t2k.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)A330 (1bvoA)V190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1bvoA)F194 because D (zeta) conformation "forbidden" or filtered. T0547 329 :H 1bvoA 189 :A T0547 331 :VLI 1bvoA 191 :RLC T0547 335 :PVL 1bvoA 195 :QVF Number of specific fragments extracted= 3 number of extra gaps= 2 total=41011 # 1te0A.329.17 read from T0547.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 T0547 329 :HAVL 1te0A 54 :AAPA T0547 335 :PVL 1te0A 60 :NVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=41013 # 2ae0X.329.267 read from T0547.t2k.many.frag # found chain 2ae0X in template set T0547 329 :HAVLIAPVL 2ae0X 268 :GTTLLAEVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=41014 # 1woqA.329.150 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)A330 (1woqA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0547 329 :H 1woqA 151 :T T0547 331 :VLIAPVL 1woqA 153 :IGSAFIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=41016 1c8uA expands to /projects/compbio/data/pdb/1c8u.pdb.gz 1c8uA:# 1c8uA.329.69 read from T0547.t2k.many.frag # adding 1c8uA to template set # found chain 1c8uA in template set Warning: unaligning (T0547)A330 (1c8uA)K72 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 1c8uA 71 :K T0547 331 :VLIA 1c8uA 73 :PIIY T0547 336 :VL 1c8uA 78 :VE Number of specific fragments extracted= 3 number of extra gaps= 2 total=41019 1v3eA expands to /projects/compbio/data/pdb/1v3e.pdb.gz 1v3eA:Skipped atom 792, because occupancy 0.500 <= existing 0.500 in 1v3eA Skipped atom 794, because occupancy 0.500 <= existing 0.500 in 1v3eA Skipped atom 796, because occupancy 0.500 <= existing 0.500 in 1v3eA Skipped atom 798, because occupancy 0.500 <= existing 0.500 in 1v3eA Skipped atom 800, because occupancy 0.500 <= existing 0.500 in 1v3eA Skipped atom 802, because occupancy 0.500 <= existing 0.500 in 1v3eA # 1v3eA.329.77 read from T0547.t2k.many.frag # adding 1v3eA to template set # found chain 1v3eA in template set Warning: unaligning (T0547)A330 (1v3eA)S220 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1v3eA)Q225 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1v3eA)G227 because Y (epsilon') conformation "forbidden" or filtered. T0547 329 :H 1v3eA 219 :K T0547 331 :VLIA 1v3eA 221 :YQVL T0547 336 :V 1v3eA 226 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=41022 # 2fn0A.329.321 read from T0547.t2k.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)P335 (2fn0A)G325 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 2fn0A 319 :VQHLGS T0547 336 :VL 2fn0A 326 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=41024 # 1w6gA.329.272 read from T0547.t2k.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)A330 (1w6gA)S276 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1w6gA)V281 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 1w6gA 275 :A T0547 331 :VLIA 1w6gA 277 :IAEM T0547 336 :VL 1w6gA 282 :VP Number of specific fragments extracted= 3 number of extra gaps= 2 total=41027 # 1fl0A.329.5 read from T0547.t2k.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1fl0A 155 :LDLRIG T0547 336 :VL 1fl0A 162 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=41029 # 1n7zA.329.125 read from T0547.t2k.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1n7zA 126 :AGWLVY T0547 336 :VL 1n7zA 133 :CL Number of specific fragments extracted= 2 number of extra gaps= 1 total=41031 1o75A expands to /projects/compbio/data/pdb/1o75.pdb.gz 1o75A:Skipped atom 244, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 245, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 246, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 247, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 248, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 249, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 250, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 251, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 306, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 307, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 308, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 309, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 310, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 311, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 692, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 693, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 694, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 695, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 696, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 697, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 729, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 730, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 731, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 732, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 733, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 734, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 735, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 736, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 777, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 778, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 779, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 780, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 781, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 782, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2003, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2004, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2005, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2006, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2007, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2008, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2009, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2010, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2073, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2074, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2075, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2076, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2077, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2078, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2079, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2080, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2480, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2481, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2482, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2483, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2484, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2485, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2486, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2487, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2488, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2489, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2490, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2533, because occupancy 0.280 <= existing 0.720 in 1o75A Skipped atom 2534, because occupancy 0.280 <= existing 0.720 in 1o75A Skipped atom 2535, because occupancy 0.280 <= existing 0.720 in 1o75A Skipped atom 2536, because occupancy 0.280 <= existing 0.720 in 1o75A Skipped atom 2537, because occupancy 0.280 <= existing 0.720 in 1o75A Skipped atom 2538, because occupancy 0.280 <= existing 0.720 in 1o75A Skipped atom 2539, because occupancy 0.280 <= existing 0.720 in 1o75A # 1o75A.329.70 read from T0547.t2k.many.frag # adding 1o75A to template set # found chain 1o75A in template set T0547 329 :HAVLIAPVL 1o75A 71 :VEVLGEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=41032 # 1t0tV.329.137 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)P335 (1t0tV)Y144 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1t0tV 138 :TNYICF T0547 336 :VL 1t0tV 145 :PM Number of specific fragments extracted= 2 number of extra gaps= 1 total=41034 # 1w61A.329.329 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)P335 (1w61A)R336 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1w61A 330 :GSLFQG T0547 336 :VL 1w61A 337 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=41036 # 1pjxA.329.197 read from T0547.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0547)H329 (1pjxA)K198 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1pjxA)L200 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1pjxA)L200 T0547 332 :LIAPVL 1pjxA 201 :WSYDIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=41037 # 1qs1A.329.236 read from T0547.t2k.many.frag # found chain 1qs1A in training set T0547 329 :HAVLIAPVL 1qs1A 237 :GYMVHVDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=41038 # 1mdaH.329.333 read from T0547.t2k.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)L332 (1mdaH)E337 because L (left) conformation "forbidden" or filtered. T0547 329 :HAV 1mdaH 334 :AGT T0547 333 :IAPVL 1mdaH 338 :VLDIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=41040 # 1knwA.330.277 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A334 (1knwA)T282 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLI 1knwA 278 :GVLI T0547 335 :PVLE 1knwA 283 :QVRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=41042 # 7odcA.330.283 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIAPVL 7odcA 284 :FTLAVNII Number of specific fragments extracted= 1 number of extra gaps= 1 total=41043 # 1rcqA.330.232 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A330 (1rcqA)M233 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1rcqA)S241 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLI 1rcqA 234 :TLE T0547 336 :VL 1rcqA 239 :VI Number of specific fragments extracted= 2 number of extra gaps= 3 total=41045 # 1wckA.330.131 read from T0547.t2k.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 1wckA 132 :GFYKI T0547 336 :VLE 1wckA 138 :VIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=41047 # 1l1oC.330.26 read from T0547.t2k.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1l1oC)Y470 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIA 1l1oC 462 :FSSVA T0547 336 :VL 1l1oC 468 :VV Number of specific fragments extracted= 2 number of extra gaps= 2 total=41049 # 2aneA.330.77 read from T0547.t2k.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 2aneA 71 :VGTVA T0547 336 :VLE 2aneA 77 :ILQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=41051 # 1lmiA.330.21 read from T0547.t2k.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. T0547 330 :AVLIA 1lmiA 22 :VVLGW T0547 336 :V 1lmiA 28 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=41053 # 1uscA.330.115 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1uscA)E124 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIA 1uscA 116 :AAYEL T0547 336 :VL 1uscA 122 :LL Number of specific fragments extracted= 2 number of extra gaps= 2 total=41055 # 1u8xX.330.225 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 (1u8xX)G204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1u8xX 205 :WWT T0547 336 :VLE 1u8xX 209 :IQD Number of specific fragments extracted= 2 number of extra gaps= 2 total=41057 # 1c8uA.330.70 read from T0547.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 1c8uA 72 :KPIIY T0547 336 :VLE 1c8uA 78 :VET Number of specific fragments extracted= 2 number of extra gaps= 1 total=41059 # 1br9.330.16 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)A330 (1br9)V17 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIA 1br9 18 :VIRA T0547 336 :VL 1br9 23 :AV Number of specific fragments extracted= 2 number of extra gaps= 3 total=41061 # 1w61A.330.330 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)A330 (1w61A)S331 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1w61A)R336 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1w61A)G339 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIA 1w61A 332 :LFQG T0547 336 :VL 1w61A 337 :VL Number of specific fragments extracted= 2 number of extra gaps= 3 total=41063 # 1xjvA.330.156 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLI 1xjvA 162 :FDLT T0547 336 :VLE 1xjvA 168 :LLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=41065 # 1bvoA.330.142 read from T0547.t2k.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)A330 (1bvoA)V190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1bvoA)F194 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1bvoA)L198 because P (beta_P) conformation "forbidden" or filtered. T0547 331 :VLI 1bvoA 191 :RLC T0547 335 :PVL 1bvoA 195 :QVF Number of specific fragments extracted= 2 number of extra gaps= 3 total=41067 # 1oz2A.330.57 read from T0547.t2k.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)A334 (1oz2A)L258 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1oz2A)T259 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLI 1oz2A 254 :MYFI T0547 336 :VLE 1oz2A 260 :VAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=41069 # 1v3eA.330.78 read from T0547.t2k.many.frag # found chain 1v3eA in template set Warning: unaligning (T0547)A330 (1v3eA)S220 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1v3eA)Q225 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1v3eA)G227 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIA 1v3eA 221 :YQVL T0547 336 :V 1v3eA 226 :I T0547 338 :E 1v3eA 228 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=41072 # 1te0A.330.18 read from T0547.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 T0547 330 :AVL 1te0A 55 :APA T0547 335 :PVLE 1te0A 60 :NVYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=41074 # 2bvcA.330.142 read from T0547.t2k.many.frag # found chain 2bvcA in template set T0547 330 :AVLIAPVLE 2bvcA 135 :EFYIFDSVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=41075 # 1o75A.330.71 read from T0547.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)A334 (1o75A)E76 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLI 1o75A 72 :EVLG T0547 335 :PVLE 1o75A 77 :KVLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=41077 # 1fl0A.330.6 read from T0547.t2k.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 1fl0A 156 :DLRIG T0547 336 :VLE 1fl0A 162 :IIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=41079 1um0A expands to /projects/compbio/data/pdb/1um0.pdb.gz 1um0A:# 1um0A.330.150 read from T0547.t2k.many.frag # adding 1um0A to template set # found chain 1um0A in template set Warning: unaligning (T0547)L332 (1um0A)G153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1um0A)I155 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1um0A)E156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1um0A)G158 because L (left) conformation "forbidden" or filtered. T0547 330 :AV 1um0A 151 :ES T0547 333 :I 1um0A 154 :I T0547 336 :V 1um0A 157 :I T0547 338 :E 1um0A 159 :G Number of specific fragments extracted= 4 number of extra gaps= 3 total=41083 # 1io1A.330.174 read from T0547.t2k.many.frag # found chain 1io1A in template set T0547 330 :AVLIAPVLE 1io1A 227 :GKYYAKVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=41084 # 1t0tV.330.138 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)P335 (1t0tV)Y144 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 1t0tV 139 :NYICF T0547 336 :VLE 1t0tV 145 :PMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=41086 1xdfA expands to /projects/compbio/data/pdb/1xdf.pdb.gz 1xdfA:# 1xdfA.330.63 read from T0547.t2k.many.frag # adding 1xdfA to template set # found chain 1xdfA in template set Warning: unaligning (T0547)P335 (1xdfA)K69 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 1xdfA 64 :KYVLH T0547 336 :VLE 1xdfA 70 :IEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=41088 # 1ewfA.330.51 read from T0547.t2k.many.frag # found chain 1ewfA in training set Warning: unaligning (T0547)I333 (1ewfA)S55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1ewfA)D57 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVL 1ewfA 52 :SFY T0547 334 :A 1ewfA 56 :M T0547 336 :VLE 1ewfA 58 :IRE Number of specific fragments extracted= 3 number of extra gaps= 2 total=41091 # 1n7zA.330.126 read from T0547.t2k.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1n7zA)D135 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIA 1n7zA 127 :GWLVY T0547 336 :VL 1n7zA 133 :CL Number of specific fragments extracted= 2 number of extra gaps= 2 total=41093 1xk5A expands to /projects/compbio/data/pdb/1xk5.pdb.gz 1xk5A:# 1xk5A.330.85 read from T0547.t2k.many.frag # adding 1xk5A to template set # found chain 1xk5A in template set Warning: unaligning (T0547)P335 (1xk5A)D187 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIA 1xk5A 182 :TYYVL T0547 336 :VLE 1xk5A 188 :VMC Number of specific fragments extracted= 2 number of extra gaps= 1 total=41095 # 1ddwA.330.6 read from T0547.t2k.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)A330 (1ddwA)F7 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1ddwA)T9 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1ddwA)Q15 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :V 1ddwA 8 :S T0547 333 :IAPVL 1ddwA 10 :RAHVF Number of specific fragments extracted= 2 number of extra gaps= 3 total=41097 # 1n08A.330.75 read from T0547.t2k.many.frag # found chain 1n08A in training set Warning: unaligning (T0547)L332 (1n08A)M78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1n08A)S81 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1n08A)G83 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AV 1n08A 76 :FP T0547 333 :IA 1n08A 79 :VM T0547 336 :V 1n08A 82 :V T0547 338 :E 1n08A 84 :W Number of specific fragments extracted= 4 number of extra gaps= 3 total=41101 # 2ae0X.330.268 read from T0547.t2k.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)A330 (2ae0X)T269 because P (beta_P) conformation "forbidden" or filtered. T0547 331 :VLIAPVLE 2ae0X 270 :TLLAEVPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=41102 # 1knwA.331.278 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 331 :VLIAPVLEL 1knwA 279 :VLITQVRSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=41103 # 7odcA.331.284 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIAPVL 7odcA 285 :TLAVNII T0547 339 :L 7odcA 293 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=41105 # 1rcqA.331.233 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1rcqA 234 :TLES T0547 336 :VLEL 1rcqA 239 :VISV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41107 # 1l1oC.331.27 read from T0547.t2k.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)L332 (1l1oC)S464 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1l1oC)Y470 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :V 1l1oC 463 :S T0547 333 :IA 1l1oC 465 :VA T0547 336 :VL 1l1oC 468 :VV T0547 339 :L 1l1oC 471 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=41111 # 1lmiA.331.22 read from T0547.t2k.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. T0547 331 :VLIA 1lmiA 23 :VLGW T0547 336 :V 1lmiA 28 :V T0547 339 :L 1lmiA 31 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=41114 # 1wckA.331.132 read from T0547.t2k.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1wckA 133 :FYKI T0547 336 :VLEL 1wckA 138 :VIAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=41116 # 2aneA.331.78 read from T0547.t2k.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 2aneA 72 :GTVA T0547 336 :VLEL 2aneA 77 :ILQM Number of specific fragments extracted= 2 number of extra gaps= 1 total=41118 # 1c8uA.331.71 read from T0547.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1c8uA 73 :PIIY T0547 336 :VLEL 1c8uA 78 :VETL Number of specific fragments extracted= 2 number of extra gaps= 1 total=41120 # 1w61A.331.331 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)P335 (1w61A)R336 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1w61A 332 :LFQG T0547 336 :VLEL 1w61A 337 :VLGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=41122 # 1uscA.331.116 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1uscA)E124 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIA 1uscA 117 :AYEL T0547 336 :VL 1uscA 122 :LL T0547 339 :L 1uscA 125 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=41125 # 1br9.331.17 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIA 1br9 18 :VIRA T0547 336 :VL 1br9 23 :AV T0547 339 :L 1br9 26 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=41128 # 1xjvA.331.157 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1xjvA 163 :DLTC T0547 336 :VLEL 1xjvA 168 :LLGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=41130 # 1bvoA.331.143 read from T0547.t2k.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)A334 (1bvoA)F194 because D (zeta) conformation "forbidden" or filtered. T0547 331 :VLI 1bvoA 191 :RLC T0547 335 :PVLEL 1bvoA 195 :QVFLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=41132 # 1fl0A.331.7 read from T0547.t2k.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1fl0A 157 :LRIG T0547 336 :VLEL 1fl0A 162 :IITA Number of specific fragments extracted= 2 number of extra gaps= 1 total=41134 # 1u8xX.331.226 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1u8xX 204 :GWWT T0547 336 :VLEL 1u8xX 209 :IQDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=41136 # 1t0tV.331.139 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)P335 (1t0tV)Y144 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1t0tV 140 :YICF T0547 336 :VLEL 1t0tV 145 :PMDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=41138 # 1v3eA.331.79 read from T0547.t2k.many.frag # found chain 1v3eA in template set Warning: unaligning (T0547)P335 (1v3eA)Q225 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1v3eA)G227 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1v3eA)I228 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1v3eA 221 :YQVL T0547 336 :V 1v3eA 226 :I T0547 339 :L 1v3eA 229 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=41141 # 1x6oA.331.96 read from T0547.t2k.many.frag # found chain 1x6oA in training set T0547 331 :VLIAPVLEL 1x6oA 89 :TYTYSVLDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=41142 # 1o75A.331.72 read from T0547.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)E338 (1o75A)S80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1o75A)K81 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIAPVL 1o75A 73 :VLGEKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=41143 # 1oz2A.331.58 read from T0547.t2k.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)P335 (1oz2A)T259 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1oz2A 255 :YFIL T0547 336 :VLEL 1oz2A 260 :VAEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41145 # 1te0A.331.19 read from T0547.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 T0547 331 :VL 1te0A 56 :PA T0547 335 :PVLEL 1te0A 60 :NVYNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=41147 # 1um0A.331.151 read from T0547.t2k.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)V331 (1um0A)S152 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1um0A)G153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1um0A)E156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1um0A)G159 because T (delta_L) conformation "forbidden" or filtered. T0547 333 :IA 1um0A 154 :II T0547 336 :VL 1um0A 157 :IG T0547 339 :L 1um0A 160 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=41150 # 1xdfA.331.64 read from T0547.t2k.many.frag # found chain 1xdfA in template set Warning: unaligning (T0547)P335 (1xdfA)K69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1xdfA)A72 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1xdfA 65 :YVLH T0547 336 :VL 1xdfA 70 :IE T0547 339 :L 1xdfA 73 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=41153 # 1io1A.331.175 read from T0547.t2k.many.frag # found chain 1io1A in template set T0547 331 :VLIAPVLEL 1io1A 228 :KYYAKVTVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=41154 # 2bvcA.331.143 read from T0547.t2k.many.frag # found chain 2bvcA in template set T0547 331 :VLIAPVLEL 2bvcA 136 :FYIFDSVSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=41155 # 1ddwA.331.7 read from T0547.t2k.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)L332 (1ddwA)T9 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :V 1ddwA 8 :S T0547 333 :IAPVLEL 1ddwA 10 :RAHVFQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=41157 1twfH expands to /projects/compbio/data/pdb/1twf.pdb.gz 1twfH:# 1twfH.331.6 read from T0547.t2k.many.frag # adding 1twfH to template set # found chain 1twfH in template set Warning: unaligning (T0547)E338 (1twfH)E14 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIAPVL 1twfH 7 :DDIFQVS T0547 339 :L 1twfH 15 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=41159 # 1jb0E.331.17 read from T0547.t2k.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)P335 (1jb0E)T22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIA 1jb0E 18 :NEVG T0547 336 :VL 1jb0E 23 :VA T0547 339 :L 1jb0E 26 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=41162 # 1woqA.331.152 read from T0547.t2k.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)E338 (1woqA)D160 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1woqA)G161 because T (delta_L) conformation "forbidden" or filtered. T0547 331 :VLIAPVL 1woqA 153 :IGSAFIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=41163 # 1n08A.331.76 read from T0547.t2k.many.frag # found chain 1n08A in training set Warning: unaligning (T0547)P335 (1n08A)S81 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1n08A 77 :PMVM T0547 336 :VLEL 1n08A 82 :VGWN Number of specific fragments extracted= 2 number of extra gaps= 1 total=41165 # 1knwA.332.279 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 332 :LIAPVLELF 1knwA 280 :LITQVRSVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=41166 # 7odcA.332.285 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIAPVL 7odcA 286 :LAVNII T0547 339 :LF 7odcA 293 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=41168 # 1rcqA.332.234 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LI 1rcqA 235 :LE T0547 336 :VLELF 1rcqA 239 :VISVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=41170 # 2aneA.332.79 read from T0547.t2k.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 2aneA 73 :TVA T0547 336 :VLELF 2aneA 77 :ILQML Number of specific fragments extracted= 2 number of extra gaps= 1 total=41172 # 1l1oC.332.28 read from T0547.t2k.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)L332 (1l1oC)S464 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1l1oC)Y470 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1l1oC 465 :VA T0547 336 :VL 1l1oC 468 :VV T0547 339 :LF 1l1oC 471 :LR Number of specific fragments extracted= 3 number of extra gaps= 3 total=41175 # 1uscA.332.117 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1uscA 118 :YEL T0547 336 :VLELF 1uscA 122 :LLEVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=41177 # 1lmiA.332.23 read from T0547.t2k.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1lmiA 24 :LGW T0547 336 :VLELF 1lmiA 28 :VSDLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=41179 # 1c8uA.332.72 read from T0547.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F340 (1c8uA)R82 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1c8uA 74 :IIY T0547 336 :VLEL 1c8uA 78 :VETL Number of specific fragments extracted= 2 number of extra gaps= 2 total=41181 # 1wckA.332.133 read from T0547.t2k.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1wckA 134 :YKI T0547 336 :VLELF 1wckA 138 :VIANT Number of specific fragments extracted= 2 number of extra gaps= 1 total=41183 # 1w61A.332.332 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)A334 (1w61A)G335 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1w61A)R336 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1w61A)G339 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LI 1w61A 333 :FQ T0547 336 :VL 1w61A 337 :VL T0547 339 :LF 1w61A 340 :EE Number of specific fragments extracted= 3 number of extra gaps= 2 total=41186 # 1br9.332.18 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1br9 19 :IRA T0547 336 :VL 1br9 23 :AV T0547 339 :LF 1br9 26 :EK Number of specific fragments extracted= 3 number of extra gaps= 2 total=41189 # 1t0tV.332.140 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)P335 (1t0tV)Y144 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1t0tV 141 :ICF T0547 336 :VLELF 1t0tV 145 :PMDKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=41191 # 1fl0A.332.8 read from T0547.t2k.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1fl0A 158 :RIG T0547 336 :VLELF 1fl0A 162 :IITAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=41193 # 1xjvA.332.158 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1xjvA 164 :LTC T0547 336 :VLELF 1xjvA 168 :LLGKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=41195 # 1x6oA.332.97 read from T0547.t2k.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)E338 (1x6oA)D96 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIAPVL 1x6oA 90 :YTYSVL T0547 339 :LF 1x6oA 97 :IQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=41197 # 1pfbA.332.4 read from T0547.t2k.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)P335 (1pfbA)K30 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1pfbA 27 :AAE T0547 336 :VLELF 1pfbA 31 :IIQKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=41199 # 1bvoA.332.144 read from T0547.t2k.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)A334 (1bvoA)F194 because D (zeta) conformation "forbidden" or filtered. T0547 332 :LI 1bvoA 192 :LC T0547 335 :PVLELF 1bvoA 195 :QVFLEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=41201 # 1te0A.332.20 read from T0547.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)L66 T0547 332 :L 1te0A 57 :A T0547 335 :PVLEL 1te0A 60 :NVYNR Number of specific fragments extracted= 2 number of extra gaps= 2 total=41203 # 1jb0E.332.18 read from T0547.t2k.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)A334 (1jb0E)G21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1jb0E)T22 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LI 1jb0E 19 :EV T0547 336 :VLELF 1jb0E 23 :VASVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=41205 # 1um0A.332.152 read from T0547.t2k.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)L332 (1um0A)G153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1um0A)E156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1um0A)G158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1um0A)G159 because T (delta_L) conformation "forbidden" or filtered. T0547 333 :IA 1um0A 154 :II T0547 336 :V 1um0A 157 :I T0547 339 :LF 1um0A 160 :IK Number of specific fragments extracted= 3 number of extra gaps= 3 total=41208 # 1v3eA.332.80 read from T0547.t2k.many.frag # found chain 1v3eA in template set Warning: unaligning (T0547)P335 (1v3eA)Q225 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1v3eA)G227 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1v3eA 222 :QVL T0547 336 :V 1v3eA 226 :I T0547 338 :ELF 1v3eA 228 :IIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=41211 # 1o75A.332.73 read from T0547.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)E338 (1o75A)S80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1o75A)K81 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIAPVL 1o75A 74 :LGEKVL T0547 340 :F 1o75A 82 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=41213 # 1f60A.332.243 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E338 (1f60A)D250 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIAPVL 1f60A 244 :LRLPLQ T0547 339 :LF 1f60A 251 :VY Number of specific fragments extracted= 2 number of extra gaps= 1 total=41215 # 1oz2A.332.59 read from T0547.t2k.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)P335 (1oz2A)T259 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1oz2A)E262 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1oz2A 256 :FIL T0547 336 :VL 1oz2A 260 :VA T0547 339 :LF 1oz2A 263 :VC Number of specific fragments extracted= 3 number of extra gaps= 2 total=41218 # 1z6fA.332.234 read from T0547.t2k.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)A334 (1z6fA)S237 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1z6fA)A238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1z6fA)G241 because L (left) conformation "forbidden" or filtered. T0547 332 :LI 1z6fA 235 :LI T0547 336 :VL 1z6fA 239 :VM T0547 339 :LF 1z6fA 242 :GR Number of specific fragments extracted= 3 number of extra gaps= 2 total=41221 1i8dA expands to /projects/compbio/data/pdb/1i8d.pdb.gz 1i8dA:# 1i8dA.332.7 read from T0547.t2k.many.frag # adding 1i8dA to template set # found chain 1i8dA in template set Warning: unaligning (T0547)E338 (1i8dA)S14 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIAPVL 1i8dA 8 :GTAKLV T0547 339 :LF 1i8dA 15 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=41223 # 1u8xX.332.227 read from T0547.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1u8xX)D211 because P (beta_P) conformation "forbidden" or filtered. T0547 332 :LIA 1u8xX 205 :WWT T0547 336 :VL 1u8xX 209 :IQ T0547 339 :LF 1u8xX 212 :QE Number of specific fragments extracted= 3 number of extra gaps= 2 total=41226 # 1twfH.332.7 read from T0547.t2k.many.frag # found chain 1twfH in template set Warning: unaligning (T0547)L332 (1twfH)D8 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1twfH)F10 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :I 1twfH 9 :I T0547 335 :PVLELF 1twfH 11 :QVSEVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=41228 # 1tjxA.332.94 read from T0547.t2k.many.frag # found chain 1tjxA in training set Warning: unaligning (T0547)P335 (1tjxA)T360 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1tjxA 357 :VVV T0547 336 :VLELF 1tjxA 361 :VLDYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=41230 # 1ddwA.332.8 read from T0547.t2k.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)L332 (1ddwA)T9 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IAPVLELF 1ddwA 10 :RAHVFQID Number of specific fragments extracted= 1 number of extra gaps= 1 total=41231 # 1knwA.333.280 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 333 :IAPVLELFS 1knwA 281 :ITQVRSVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=41232 # 7odcA.333.286 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IAPVL 7odcA 287 :AVNII T0547 339 :LFS 7odcA 293 :KKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=41234 # 1rcqA.333.235 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 1rcqA 236 :ES T0547 336 :VLELFS 1rcqA 239 :VISVRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=41236 # 2aneA.333.80 read from T0547.t2k.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2aneA)Q79 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 2aneA 74 :VA T0547 336 :VL 2aneA 77 :IL T0547 339 :LFS 2aneA 80 :MLK Number of specific fragments extracted= 3 number of extra gaps= 2 total=41239 # 1l1oC.333.29 read from T0547.t2k.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1l1oC)Y470 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1l1oC 465 :VA T0547 336 :VL 1l1oC 468 :VV T0547 339 :LFS 1l1oC 471 :LRK Number of specific fragments extracted= 3 number of extra gaps= 2 total=41242 # 1lmiA.333.24 read from T0547.t2k.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. T0547 333 :IA 1lmiA 25 :GW T0547 336 :V 1lmiA 28 :V T0547 339 :LFS 1lmiA 31 :LKS Number of specific fragments extracted= 3 number of extra gaps= 2 total=41245 # 1t0tV.333.141 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)A334 (1t0tV)F143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1t0tV)Y144 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :I 1t0tV 142 :C T0547 336 :VLELFS 1t0tV 145 :PMDKRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=41247 # 1uscA.333.118 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 1uscA 119 :EL T0547 336 :VLELFS 1uscA 122 :LLEVHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=41249 # 1c8uA.333.73 read from T0547.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)A334 (1c8uA)Y76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F340 (1c8uA)R82 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :I 1c8uA 75 :I T0547 336 :VLEL 1c8uA 78 :VETL T0547 341 :S 1c8uA 83 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=41252 # 1pfbA.333.5 read from T0547.t2k.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)P335 (1pfbA)K30 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1pfbA 28 :AE T0547 336 :VL 1pfbA 31 :II T0547 339 :LFS 1pfbA 34 :KRV Number of specific fragments extracted= 3 number of extra gaps= 2 total=41255 # 1fl0A.333.9 read from T0547.t2k.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1fl0A)K167 because P (beta_P) conformation "forbidden" or filtered. T0547 333 :IA 1fl0A 159 :IG T0547 336 :VLELF 1fl0A 162 :IITAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=41257 # 1jb0E.333.19 read from T0547.t2k.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)P335 (1jb0E)T22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1jb0E 20 :VG T0547 336 :VL 1jb0E 23 :VA T0547 339 :LFS 1jb0E 26 :VDQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=41260 # 1w61A.333.333 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)P335 (1w61A)R336 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 1w61A 334 :QG T0547 336 :VLELFS 1w61A 337 :VLGEER Number of specific fragments extracted= 2 number of extra gaps= 1 total=41262 # 1f60A.333.244 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)A334 (1f60A)L246 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1f60A)D250 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :I 1f60A 245 :R T0547 335 :PVL 1f60A 247 :PLQ T0547 339 :LFS 1f60A 251 :VYK Number of specific fragments extracted= 3 number of extra gaps= 2 total=41265 # 1br9.333.19 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 1br9 20 :RA T0547 336 :VLELFS 1br9 23 :AVSEKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=41267 # 1wckA.333.134 read from T0547.t2k.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A334 (1wckA)I136 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :I 1wckA 135 :K T0547 336 :VLELFS 1wckA 138 :VIANTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=41269 # 1xjvA.333.159 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :I 1xjvA 165 :T T0547 336 :VLELFS 1xjvA 168 :LLGKAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=41271 # 1x6oA.333.98 read from T0547.t2k.many.frag # found chain 1x6oA in training set T0547 333 :IAPVLELFS 1x6oA 91 :TYSVLDIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=41272 # 1bvoA.333.145 read from T0547.t2k.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)A334 (1bvoA)F194 because D (zeta) conformation "forbidden" or filtered. T0547 333 :I 1bvoA 193 :C T0547 335 :PVLELFS 1bvoA 195 :QVFLEGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=41274 # 1twfH.333.8 read from T0547.t2k.many.frag # found chain 1twfH in template set T0547 333 :IAPVLELFS 1twfH 9 :IFQVSEVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=41275 # 1um0A.333.153 read from T0547.t2k.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)P335 (1um0A)E156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1um0A)G158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1um0A)G159 because T (delta_L) conformation "forbidden" or filtered. T0547 333 :IA 1um0A 154 :II T0547 336 :V 1um0A 157 :I T0547 339 :LFS 1um0A 160 :IKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=41278 # 1i8dA.333.8 read from T0547.t2k.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E338 (1i8dA)S14 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IAPVL 1i8dA 9 :TAKLV T0547 339 :LFS 1i8dA 15 :IDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=41280 # 1v3eA.333.81 read from T0547.t2k.many.frag # found chain 1v3eA in template set Warning: unaligning (T0547)P335 (1v3eA)Q225 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1v3eA)G227 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1v3eA 223 :VL T0547 336 :V 1v3eA 226 :I T0547 338 :ELFS 1v3eA 228 :IITV Number of specific fragments extracted= 3 number of extra gaps= 2 total=41283 # 1te0A.333.21 read from T0547.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)L66 Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)L66 T0547 335 :PVLEL 1te0A 60 :NVYNR Number of specific fragments extracted= 1 number of extra gaps= 2 total=41284 # 1z6fA.333.235 read from T0547.t2k.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)P335 (1z6fA)A238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1z6fA)G241 because L (left) conformation "forbidden" or filtered. T0547 333 :IA 1z6fA 236 :IS T0547 336 :VL 1z6fA 239 :VM T0547 339 :LFS 1z6fA 242 :GRT Number of specific fragments extracted= 3 number of extra gaps= 2 total=41287 # 1ddwA.333.9 read from T0547.t2k.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)A334 (1ddwA)A11 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :I 1ddwA 10 :R T0547 335 :PVLELFS 1ddwA 12 :HVFQIDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=41289 # 1cqmA.333.33 read from T0547.t2k.many.frag # found chain 1cqmA in training set Warning: unaligning (T0547)I333 (1cqmA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1cqmA)A35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1cqmA)R36 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFS 1cqmA 37 :VEKVAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=41290 # 1o75A.333.74 read from T0547.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)L339 (1o75A)K81 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IAPVLE 1o75A 75 :GEKVLS T0547 340 :FS 1o75A 82 :QE Number of specific fragments extracted= 2 number of extra gaps= 1 total=41292 # 1tjxA.333.95 read from T0547.t2k.many.frag # found chain 1tjxA in training set Warning: unaligning (T0547)P335 (1tjxA)T360 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 1tjxA 358 :VV T0547 336 :VLELFS 1tjxA 361 :VLDYDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=41294 # 1io1A.333.177 read from T0547.t2k.many.frag # found chain 1io1A in template set T0547 333 :IAPVLELFS 1io1A 230 :YAKVTVTGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=41295 # 1knwA.334.281 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 334 :APVLELFSQ 1knwA 282 :TQVRSVKQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=41296 # 7odcA.334.287 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :APVL 7odcA 288 :VNII T0547 339 :LFSQ 7odcA 293 :KKTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41298 # 1t0tV.334.142 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)P335 (1t0tV)Y144 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1t0tV 143 :F T0547 336 :VLELFSQ 1t0tV 145 :PMDKRRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=41300 # 1rcqA.334.236 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1rcqA 239 :VISVRDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=41301 # 2aneA.334.81 read from T0547.t2k.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 2aneA 75 :A T0547 336 :VLELFSQ 2aneA 77 :ILQMLKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=41303 # 1uscA.334.119 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1uscA 120 :L T0547 336 :VLELFSQ 1uscA 122 :LLEVHTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=41305 # 1c8uA.334.74 read from T0547.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1c8uA 76 :Y T0547 336 :VLELFSQ 1c8uA 78 :VETLRDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=41307 # 1lmiA.334.25 read from T0547.t2k.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. T0547 334 :A 1lmiA 26 :W T0547 336 :V 1lmiA 28 :V T0547 339 :LFSQ 1lmiA 31 :LKSS Number of specific fragments extracted= 3 number of extra gaps= 2 total=41310 # 1pfbA.334.6 read from T0547.t2k.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)P335 (1pfbA)K30 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :A 1pfbA 29 :E T0547 336 :VLELFSQ 1pfbA 31 :IIQKRVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=41312 # 1fl0A.334.10 read from T0547.t2k.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1fl0A 160 :G T0547 336 :VLELFSQ 1fl0A 162 :IITARKH Number of specific fragments extracted= 2 number of extra gaps= 1 total=41314 # 1f60A.334.245 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)A334 (1f60A)L246 because D (zeta) conformation "forbidden" or filtered. T0547 335 :PVLELFSQ 1f60A 247 :PLQDVYKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=41315 # 1l1oC.334.30 read from T0547.t2k.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)A334 (1l1oC)A466 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1l1oC 468 :VVYLRKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=41316 # 1xjvA.334.160 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1xjvA 168 :LLGKAEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=41317 # 1jb0E.334.20 read from T0547.t2k.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)P335 (1jb0E)T22 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1jb0E 21 :G T0547 336 :VLELFSQ 1jb0E 23 :VASVDQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=41319 # 1wckA.334.135 read from T0547.t2k.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1wckA 136 :I T0547 336 :VLELFSQ 1wckA 138 :VIANTAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=41321 # 1w61A.334.334 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)P335 (1w61A)R336 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1w61A)G339 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1w61A)I343 because D (zeta) conformation "forbidden" or filtered. T0547 334 :A 1w61A 335 :G T0547 336 :VL 1w61A 337 :VL T0547 339 :LFS 1w61A 340 :EER Number of specific fragments extracted= 3 number of extra gaps= 3 total=41324 # 1br9.334.20 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)A334 (1br9)A21 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1br9)V29 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VL 1br9 23 :AV T0547 339 :LFS 1br9 26 :EKE Number of specific fragments extracted= 2 number of extra gaps= 3 total=41326 # 1x6oA.334.99 read from T0547.t2k.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)E338 (1x6oA)D96 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :APVL 1x6oA 92 :YSVL T0547 339 :LFSQ 1x6oA 97 :IQAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=41328 # 1bvoA.334.146 read from T0547.t2k.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)A334 (1bvoA)F194 because D (zeta) conformation "forbidden" or filtered. T0547 335 :PVLELFSQ 1bvoA 195 :QVFLEGQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=41329 # 1twfH.334.9 read from T0547.t2k.many.frag # found chain 1twfH in template set Warning: unaligning (T0547)E338 (1twfH)E14 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1twfH)G18 because L (left) conformation "forbidden" or filtered. T0547 334 :APVL 1twfH 10 :FQVS T0547 339 :LFS 1twfH 15 :VDP Number of specific fragments extracted= 2 number of extra gaps= 2 total=41331 # 1i8dA.334.9 read from T0547.t2k.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E338 (1i8dA)S14 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1i8dA)E17 because P (beta_P) conformation "forbidden" or filtered. T0547 334 :APVL 1i8dA 10 :AKLV T0547 339 :LF 1i8dA 15 :ID T0547 342 :Q 1i8dA 18 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=41334 # 1te0A.334.22 read from T0547.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)L66 Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)L66 T0547 335 :PVLEL 1te0A 60 :NVYNR T0547 342 :Q 1te0A 67 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=41336 # 1um0A.334.154 read from T0547.t2k.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)P335 (1um0A)E156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1um0A)G158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1um0A)G159 because T (delta_L) conformation "forbidden" or filtered. T0547 334 :A 1um0A 155 :I T0547 336 :V 1um0A 157 :I T0547 339 :LFSQ 1um0A 160 :IKAK Number of specific fragments extracted= 3 number of extra gaps= 2 total=41339 # 1v3eA.334.82 read from T0547.t2k.many.frag # found chain 1v3eA in template set Warning: unaligning (T0547)P335 (1v3eA)Q225 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1v3eA)G227 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :A 1v3eA 224 :L T0547 336 :V 1v3eA 226 :I T0547 338 :ELFSQ 1v3eA 228 :IITVN Number of specific fragments extracted= 3 number of extra gaps= 2 total=41342 # 1z6fA.334.236 read from T0547.t2k.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)P335 (1z6fA)A238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1z6fA)G241 because L (left) conformation "forbidden" or filtered. T0547 334 :A 1z6fA 237 :S T0547 336 :VL 1z6fA 239 :VM T0547 339 :LFSQ 1z6fA 242 :GRTF Number of specific fragments extracted= 3 number of extra gaps= 2 total=41345 # 1cqmA.334.34 read from T0547.t2k.many.frag # found chain 1cqmA in training set Warning: unaligning (T0547)P335 (1cqmA)R36 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1cqmA 35 :A T0547 336 :VLELFSQ 1cqmA 37 :VEKVAIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=41347 # 1dc1A.334.156 read from T0547.t2k.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)P335 (1dc1A)K158 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 T0547 334 :A 1dc1A 157 :Y T0547 336 :VLEL 1dc1A 159 :WLDS T0547 342 :Q 1dc1A 165 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=41350 # 1tjxA.334.96 read from T0547.t2k.many.frag # found chain 1tjxA in training set Warning: unaligning (T0547)P335 (1tjxA)T360 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1tjxA)D363 because P (beta_P) conformation "forbidden" or filtered. T0547 334 :A 1tjxA 359 :V T0547 336 :VL 1tjxA 361 :VL T0547 339 :LFSQ 1tjxA 364 :YDKI Number of specific fragments extracted= 3 number of extra gaps= 2 total=41353 # 1ddwA.334.10 read from T0547.t2k.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)E338 (1ddwA)Q15 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :APVL 1ddwA 11 :AHVF T0547 339 :LFSQ 1ddwA 16 :IDPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=41355 1wocA expands to /projects/compbio/data/pdb/1woc.pdb.gz 1wocA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wocA.334.10 read from T0547.t2k.many.frag # adding 1wocA to template set # found chain 1wocA in template set Warning: unaligning (T0547)A334 (1wocA)C12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1wocA)R13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1wocA)S20 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VLELFS 1wocA 14 :APLRKV Number of specific fragments extracted= 1 number of extra gaps= 2 total=41356 # 1knwA.335.282 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 335 :PVLELFSQE 1knwA 283 :QVRSVKQMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=41357 # 1t0tV.335.143 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)P335 (1t0tV)Y144 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1t0tV)Q151 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1t0tV)G152 because S (epsilon) conformation "forbidden" or filtered. T0547 336 :VLELFS 1t0tV 145 :PMDKRR Number of specific fragments extracted= 1 number of extra gaps= 2 total=41358 # 1rcqA.335.237 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1rcqA)S241 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1rcqA)P246 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VL 1rcqA 239 :VI T0547 339 :LFSQ 1rcqA 242 :VRDL Number of specific fragments extracted= 2 number of extra gaps= 3 total=41360 # 7odcA.335.288 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 T0547 335 :PVLELFSQ 7odcA 289 :NIIAKKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=41361 # 2aneA.335.82 read from T0547.t2k.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 2aneA 77 :ILQMLKLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=41362 # 1uscA.335.120 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1uscA 122 :LLEVHTFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=41363 # 1c8uA.335.75 read from T0547.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1c8uA)T80 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VL 1c8uA 78 :VE T0547 339 :LFSQE 1c8uA 81 :LRDGN Number of specific fragments extracted= 2 number of extra gaps= 2 total=41365 # 1pfbA.335.7 read from T0547.t2k.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)P335 (1pfbA)K30 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1pfbA 31 :II T0547 339 :LFSQE 1pfbA 34 :KRVKK Number of specific fragments extracted= 2 number of extra gaps= 2 total=41367 # 1fl0A.335.11 read from T0547.t2k.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1fl0A 162 :IITARKHP Number of specific fragments extracted= 1 number of extra gaps= 1 total=41368 # 1f60A.335.246 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E338 (1f60A)D250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1f60A)K253 because D (zeta) conformation "forbidden" or filtered. T0547 335 :PVL 1f60A 247 :PLQ T0547 339 :LF 1f60A 251 :VY T0547 342 :QE 1f60A 254 :IG Number of specific fragments extracted= 3 number of extra gaps= 2 total=41371 # 1jb0E.335.21 read from T0547.t2k.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)P335 (1jb0E)T22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1jb0E)P30 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VL 1jb0E 23 :VA T0547 339 :LFSQ 1jb0E 26 :VDQT Number of specific fragments extracted= 2 number of extra gaps= 3 total=41373 # 1xjvA.335.161 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1xjvA 168 :LLGKAEVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=41374 # 1lmiA.335.26 read from T0547.t2k.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. T0547 336 :V 1lmiA 28 :V T0547 339 :LFSQE 1lmiA 31 :LKSST Number of specific fragments extracted= 2 number of extra gaps= 2 total=41376 # 1l1oC.335.31 read from T0547.t2k.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1l1oC)Y470 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1l1oC 468 :VV T0547 339 :LFSQE 1l1oC 471 :LRKEN Number of specific fragments extracted= 2 number of extra gaps= 2 total=41378 # 1i8dA.335.10 read from T0547.t2k.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E338 (1i8dA)S14 because Y (epsilon') conformation "forbidden" or filtered. T0547 335 :PVL 1i8dA 11 :KLV T0547 339 :LFSQE 1i8dA 15 :IDEKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=41380 # 1w61A.335.335 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)P335 (1w61A)R336 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1w61A)G339 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1w61A 337 :VL T0547 339 :LFSQE 1w61A 340 :EERIP Number of specific fragments extracted= 2 number of extra gaps= 2 total=41382 # 1x6oA.335.100 read from T0547.t2k.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)E338 (1x6oA)D96 because Y (epsilon') conformation "forbidden" or filtered. T0547 335 :PVL 1x6oA 93 :SVL T0547 339 :LFSQE 1x6oA 97 :IQANE Number of specific fragments extracted= 2 number of extra gaps= 1 total=41384 # 1z6fA.335.237 read from T0547.t2k.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)P335 (1z6fA)A238 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1z6fA 239 :VMGGRTFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=41385 # 1dc1A.335.157 read from T0547.t2k.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)P335 (1dc1A)K158 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 T0547 336 :VLEL 1dc1A 159 :WLDS T0547 342 :QE 1dc1A 165 :KK Number of specific fragments extracted= 2 number of extra gaps= 2 total=41387 # 1br9.335.21 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1br9 23 :AV T0547 339 :LFSQE 1br9 26 :EKEVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=41389 # 1twfH.335.10 read from T0547.t2k.many.frag # found chain 1twfH in template set Warning: unaligning (T0547)E343 (1twfH)R19 because T (delta_L) conformation "forbidden" or filtered. T0547 335 :PVLELFSQ 1twfH 11 :QVSEVDPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=41390 # 1bvoA.335.147 read from T0547.t2k.many.frag # found chain 1bvoA in template set T0547 335 :PVLELFSQE 1bvoA 195 :QVFLEGQQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=41391 # 1wckA.335.136 read from T0547.t2k.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1wckA 138 :VIANTATA Number of specific fragments extracted= 1 number of extra gaps= 1 total=41392 # 1te0A.335.23 read from T0547.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)L66 Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)L66 T0547 335 :PVLEL 1te0A 60 :NVYNR T0547 342 :QE 1te0A 67 :NT Number of specific fragments extracted= 2 number of extra gaps= 1 total=41394 # 1v3eA.335.83 read from T0547.t2k.many.frag # found chain 1v3eA in template set Warning: unaligning (T0547)P335 (1v3eA)Q225 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1v3eA 226 :IGIITVNS Number of specific fragments extracted= 1 number of extra gaps= 1 total=41395 # 1um0A.335.155 read from T0547.t2k.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)P335 (1um0A)E156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1um0A)G158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1um0A)G159 because T (delta_L) conformation "forbidden" or filtered. T0547 336 :V 1um0A 157 :I T0547 339 :LFSQE 1um0A 160 :IKAKN Number of specific fragments extracted= 2 number of extra gaps= 2 total=41397 # 3prn.335.33 read from T0547.t2k.many.frag # found chain 3prn in template set Warning: unaligning (T0547)P335 (3prn)N34 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (3prn)T41 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFS 3prn 35 :IVGTTE T0547 343 :E 3prn 42 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=41399 # 1cqmA.335.35 read from T0547.t2k.many.frag # found chain 1cqmA in training set Warning: unaligning (T0547)P335 (1cqmA)R36 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1cqmA 37 :VEKVAILG Number of specific fragments extracted= 1 number of extra gaps= 1 total=41400 # 1ddwA.335.11 read from T0547.t2k.many.frag # found chain 1ddwA in training set T0547 335 :PVLELFSQE 1ddwA 12 :HVFQIDPNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=41401 # 1tjxA.335.97 read from T0547.t2k.many.frag # found chain 1tjxA in training set Warning: unaligning (T0547)P335 (1tjxA)T360 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1tjxA)I367 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1tjxA)G368 because S (epsilon) conformation "forbidden" or filtered. T0547 336 :VLELFS 1tjxA 361 :VLDYDK Number of specific fragments extracted= 1 number of extra gaps= 2 total=41402 # 1knwA.336.283 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E343 (1knwA)G291 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1knwA)S292 because G (3-10) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1knwA 284 :VRSVKQM Number of specific fragments extracted= 1 number of extra gaps= 1 total=41403 # 1t0tV.336.144 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)E338 (1t0tV)D147 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1t0tV)Q151 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VL 1t0tV 145 :PM T0547 339 :LFS 1t0tV 148 :KRR T0547 343 :EY 1t0tV 152 :GN Number of specific fragments extracted= 3 number of extra gaps= 2 total=41406 # 1xjvA.336.162 read from T0547.t2k.many.frag # found chain 1xjvA in training set T0547 336 :VLELFSQEY 1xjvA 168 :LLGKAEVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=41407 # 1pfbA.336.8 read from T0547.t2k.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1pfbA 31 :IIQKRVK T0547 344 :Y 1pfbA 39 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=41409 # 1jb0E.336.22 read from T0547.t2k.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1jb0E)P30 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VL 1jb0E 23 :VA T0547 339 :LFSQ 1jb0E 26 :VDQT T0547 344 :Y 1jb0E 31 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=41412 # 1rcqA.336.238 read from T0547.t2k.many.frag # found chain 1rcqA in training set T0547 336 :VLELFSQEY 1rcqA 239 :VISVRDLPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=41413 # 1f60A.336.247 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E338 (1f60A)D250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1f60A)G256 because T (delta_L) conformation "forbidden" or filtered. T0547 336 :VL 1f60A 248 :LQ T0547 339 :LFSQE 1f60A 251 :VYKIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=41415 # 1uscA.336.121 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)S341 (1uscA)T127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1uscA)G129 because S (epsilon) conformation "forbidden" or filtered. T0547 336 :VLELF 1uscA 122 :LLEVH T0547 342 :Q 1uscA 128 :F T0547 344 :Y 1uscA 130 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=41418 # 1c8uA.336.76 read from T0547.t2k.many.frag # found chain 1c8uA in template set T0547 336 :VLELFSQEY 1c8uA 78 :VETLRDGNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=41419 # 1i8dA.336.11 read from T0547.t2k.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E338 (1i8dA)S14 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1i8dA 12 :LV T0547 339 :LFSQEY 1i8dA 15 :IDEKPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=41421 # 2aneA.336.83 read from T0547.t2k.many.frag # found chain 2aneA in template set T0547 336 :VLELFSQEY 2aneA 77 :ILQMLKLPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=41422 # 1fl0A.336.12 read from T0547.t2k.many.frag # found chain 1fl0A in training set T0547 336 :VLELFSQEY 1fl0A 162 :IITARKHPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=41423 # 7odcA.336.289 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 T0547 336 :VL 7odcA 290 :II T0547 339 :LFSQ 7odcA 293 :KKTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41425 # 3prn.336.34 read from T0547.t2k.many.frag # found chain 3prn in template set T0547 336 :VLELFSQEY 3prn 35 :IVGTTETDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=41426 # 1lmiA.336.27 read from T0547.t2k.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)E338 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. T0547 336 :VL 1lmiA 28 :VS T0547 339 :LFSQEY 1lmiA 31 :LKSSTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=41428 # 1w61A.336.336 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)E338 (1w61A)G339 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1w61A)P344 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1w61A)G345 because T (delta_L) conformation "forbidden" or filtered. T0547 336 :VL 1w61A 337 :VL T0547 339 :LFSQ 1w61A 340 :EERI Number of specific fragments extracted= 2 number of extra gaps= 2 total=41430 # 1ddwA.336.12 read from T0547.t2k.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)Y344 (1ddwA)K21 because L (left) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1ddwA 13 :VFQIDPNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=41431 # 1dc1A.336.158 read from T0547.t2k.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 T0547 336 :VLEL 1dc1A 159 :WLDS T0547 342 :QEY 1dc1A 165 :KKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=41433 # 1cqmA.336.36 read from T0547.t2k.many.frag # found chain 1cqmA in training set T0547 336 :VLELFSQEY 1cqmA 37 :VEKVAILGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=41434 # 1twfH.336.11 read from T0547.t2k.many.frag # found chain 1twfH in template set Warning: unaligning (T0547)E343 (1twfH)R19 because T (delta_L) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1twfH 12 :VSEVDPG T0547 344 :Y 1twfH 20 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=41436 # 1l1oC.336.32 read from T0547.t2k.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)E338 (1l1oC)Y470 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1l1oC 468 :VV T0547 339 :LFSQEY 1l1oC 471 :LRKENC Number of specific fragments extracted= 2 number of extra gaps= 1 total=41438 # 1z6fA.336.238 read from T0547.t2k.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)E338 (1z6fA)G241 because L (left) conformation "forbidden" or filtered. T0547 336 :VL 1z6fA 239 :VM T0547 339 :LFSQEY 1z6fA 242 :GRTFKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=41440 # 1bvoA.336.148 read from T0547.t2k.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)Y344 (1bvoA)G204 because T (delta_L) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1bvoA 196 :VFLEGQQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=41441 # 1te0A.336.24 read from T0547.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)E338 (1te0A)N63 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)L66 Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)L66 T0547 336 :VL 1te0A 61 :VY T0547 339 :L 1te0A 64 :R T0547 342 :QEY 1te0A 67 :NTN Number of specific fragments extracted= 3 number of extra gaps= 2 total=41444 1vpsA expands to /projects/compbio/data/pdb/1vps.pdb.gz 1vpsA:# 1vpsA.336.4 read from T0547.t2k.many.frag # adding 1vpsA to template set # found chain 1vpsA in template set Warning: unaligning (T0547)Y344 (1vpsA)D44 because L (left) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1vpsA 36 :VLDLVTGP Number of specific fragments extracted= 1 number of extra gaps= 1 total=41445 # 1v3eA.336.84 read from T0547.t2k.many.frag # found chain 1v3eA in template set Warning: unaligning (T0547)L337 (1v3eA)G227 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :V 1v3eA 226 :I T0547 338 :ELFSQEY 1v3eA 228 :IITVNSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=41447 1t6sA expands to /projects/compbio/data/pdb/1t6s.pdb.gz 1t6sA:# 1t6sA.336.136 read from T0547.t2k.many.frag # adding 1t6sA to template set # found chain 1t6sA in template set Warning: unaligning (T0547)E338 (1t6sA)G139 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1t6sA)S143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1t6sA)G145 because T (delta_L) conformation "forbidden" or filtered. T0547 336 :VL 1t6sA 137 :VR T0547 339 :LFS 1t6sA 140 :RAD T0547 343 :E 1t6sA 144 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=41450 # 1wqsA.336.84 read from T0547.t2k.many.frag # found chain 1wqsA in template set T0547 336 :VLELFSQEY 1wqsA 85 :ILIKRDSGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=41451 # 1wocA.336.12 read from T0547.t2k.many.frag # found chain 1wocA in template set Warning: unaligning (T0547)Y344 (1wocA)S22 because G (3-10) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1wocA 14 :APLRKVSP Number of specific fragments extracted= 1 number of extra gaps= 1 total=41452 # 1br9.336.22 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1br9)D30 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VL 1br9 23 :AV T0547 339 :LFSQ 1br9 26 :EKEV T0547 344 :Y 1br9 31 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=41455 # 1knwA.337.284 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Y344 (1knwA)S292 because G (3-10) conformation "forbidden" or filtered. T0547 337 :LELFSQE 1knwA 285 :RSVKQMG T0547 345 :A 1knwA 293 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=41457 # 1t0tV.337.145 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)E343 (1t0tV)G152 because S (epsilon) conformation "forbidden" or filtered. T0547 337 :LELFSQ 1t0tV 146 :MDKRRQ T0547 344 :YA 1t0tV 153 :ND Number of specific fragments extracted= 2 number of extra gaps= 1 total=41459 # 1pfbA.337.9 read from T0547.t2k.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1pfbA)G39 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :L 1pfbA 32 :I T0547 339 :LFSQE 1pfbA 34 :KRVKK T0547 345 :A 1pfbA 40 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=41462 # 1xjvA.337.163 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)Y344 (1xjvA)G176 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :LELFSQE 1xjvA 169 :LGKAEVD T0547 345 :A 1xjvA 177 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=41464 # 1f60A.337.248 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E338 (1f60A)D250 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :L 1f60A 249 :Q T0547 339 :LFSQEYA 1f60A 251 :VYKIGGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=41466 # 1jb0E.337.23 read from T0547.t2k.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1jb0E)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :L 1jb0E 24 :A T0547 339 :LFSQE 1jb0E 26 :VDQTP T0547 345 :A 1jb0E 32 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=41469 # 1i8dA.337.12 read from T0547.t2k.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E338 (1i8dA)S14 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1i8dA)K18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1i8dA)F21 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :L 1i8dA 13 :V T0547 339 :LFS 1i8dA 15 :IDE T0547 343 :EY 1i8dA 19 :PN Number of specific fragments extracted= 3 number of extra gaps= 3 total=41472 # 1uscA.337.122 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)Q342 (1uscA)F128 because D (zeta) conformation "forbidden" or filtered. T0547 337 :LELFS 1uscA 123 :LEVHT T0547 343 :EYA 1uscA 129 :GDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=41474 # 2aneA.337.84 read from T0547.t2k.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)A345 (2aneA)G86 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :LELFSQEY 2aneA 78 :LQMLKLPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=41475 # 1rcqA.337.239 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)E338 (1rcqA)S241 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1rcqA)P246 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1rcqA)G248 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :L 1rcqA 240 :I T0547 339 :LFSQ 1rcqA 242 :VRDL T0547 344 :Y 1rcqA 247 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=41478 # 1fl0A.337.13 read from T0547.t2k.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)Y344 (1fl0A)D170 because G (3-10) conformation "forbidden" or filtered. T0547 337 :LELFSQE 1fl0A 163 :ITARKHP T0547 345 :A 1fl0A 171 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=41480 # 1c8uA.337.77 read from T0547.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)E338 (1c8uA)T80 because P (beta_P) conformation "forbidden" or filtered. T0547 337 :L 1c8uA 79 :E T0547 339 :LFSQEYA 1c8uA 81 :LRDGNSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=41482 1r7mA expands to /projects/compbio/data/pdb/1r7m.pdb.gz 1r7mA:# 1r7mA.337.186 read from T0547.t2k.many.frag # adding 1r7mA to template set # found chain 1r7mA in template set Warning: unaligning (T0547)E338 (1r7mA)Y188 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. T0547 337 :L 1r7mA 187 :C T0547 339 :LFSQE 1r7mA 189 :VKINK T0547 345 :A 1r7mA 195 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=41485 # 1cqmA.337.37 read from T0547.t2k.many.frag # found chain 1cqmA in training set Warning: unaligning (T0547)E338 (1cqmA)K39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1cqmA)G44 because S (epsilon) conformation "forbidden" or filtered. T0547 337 :L 1cqmA 38 :E T0547 339 :LFSQ 1cqmA 40 :VAIL T0547 344 :YA 1cqmA 45 :LR Number of specific fragments extracted= 3 number of extra gaps= 2 total=41488 # 1twfH.337.12 read from T0547.t2k.many.frag # found chain 1twfH in template set Warning: unaligning (T0547)Q342 (1twfH)G18 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1twfH)R19 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :LELFS 1twfH 13 :SEVDP T0547 344 :YA 1twfH 20 :YN Number of specific fragments extracted= 2 number of extra gaps= 1 total=41490 # 3prn.337.35 read from T0547.t2k.many.frag # found chain 3prn in template set Warning: unaligning (T0547)Y344 (3prn)Q43 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (3prn)G44 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :LELFSQE 3prn 36 :VGTTETD Number of specific fragments extracted= 1 number of extra gaps= 1 total=41491 # 1ddwA.337.13 read from T0547.t2k.many.frag # found chain 1ddwA in training set T0547 337 :LELFSQEYA 1ddwA 14 :FQIDPNTKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=41492 # 7odcA.337.290 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 T0547 337 :L 7odcA 291 :I T0547 339 :LFSQ 7odcA 293 :KKTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41494 # 1wocA.337.13 read from T0547.t2k.many.frag # found chain 1wocA in template set Warning: unaligning (T0547)A345 (1wocA)G23 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :LELFSQEY 1wocA 15 :PLRKVSPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=41495 # 1lmiA.337.28 read from T0547.t2k.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. T0547 339 :LFSQEYA 1lmiA 31 :LKSSTAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=41496 # 1t6sA.337.137 read from T0547.t2k.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)Q342 (1t6sA)S143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1t6sA)R146 because L (left) conformation "forbidden" or filtered. T0547 337 :LELFS 1t6sA 138 :RGRAD T0547 343 :EY 1t6sA 144 :PG Number of specific fragments extracted= 2 number of extra gaps= 2 total=41498 # 1w61A.337.337 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)E338 (1w61A)G339 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1w61A)G345 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :L 1w61A 338 :L T0547 339 :LFSQE 1w61A 340 :EERIP T0547 345 :A 1w61A 346 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=41501 # 1c4qA.337.9 read from T0547.t2k.many.frag # found chain 1c4qA in training set Warning: unaligning (T0547)E338 (1c4qA)Y111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1c4qA)D118 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :L 1c4qA 110 :E T0547 339 :LFSQEY 1c4qA 112 :TKYNDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=41503 # 1vmbA.337.55 read from T0547.t2k.many.frag # found chain 1vmbA in training set T0547 337 :LELFSQEYA 1vmbA 44 :DKVERMGMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=41504 1xxaA expands to /projects/compbio/data/pdb/1xxa.pdb.gz 1xxaA:# 1xxaA.337.8 read from T0547.t2k.many.frag # adding 1xxaA to template set # found chain 1xxaA in template set Warning: unaligning (T0547)E338 (1xxaA)D88 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :L 1xxaA 87 :L T0547 339 :LFSQEYA 1xxaA 89 :IDYNDAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41506 # 1z6fA.337.239 read from T0547.t2k.many.frag # found chain 1z6fA in training set T0547 337 :LELFSQEYA 1z6fA 240 :MGGRTFKGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=41507 1nqeA expands to /projects/compbio/data/pdb/1nqe.pdb.gz 1nqeA:# 1nqeA.337.154 read from T0547.t2k.many.frag # adding 1nqeA to template set # found chain 1nqeA in template set Warning: unaligning (T0547)S341 (1nqeA)Q159 because P (beta_P) conformation "forbidden" or filtered. T0547 337 :LELF 1nqeA 155 :STQQ T0547 342 :QEYA 1nqeA 160 :LGDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=41509 # 1vpsA.337.5 read from T0547.t2k.many.frag # found chain 1vpsA in template set Warning: unaligning (T0547)E338 (1vpsA)D38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1vpsA)P43 because P (beta_P) conformation "forbidden" or filtered. T0547 337 :L 1vpsA 37 :L T0547 339 :LFSQ 1vpsA 39 :LVTG T0547 344 :YA 1vpsA 44 :DS Number of specific fragments extracted= 3 number of extra gaps= 2 total=41512 # 1n4wA.337.245 read from T0547.t2k.many.frag # found chain 1n4wA in training set T0547 337 :LELFSQEYA 1n4wA 251 :KTIRQTKDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=41513 # 2aqjA.337.187 read from T0547.t2k.many.frag # found chain 2aqjA in training set T0547 337 :LELFSQEYA 2aqjA 188 :VDVRLNNRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=41514 # 1knwA.338.285 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E338 (1knwA)S286 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1knwA)Q289 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1knwA)G291 because S (epsilon) conformation "forbidden" or filtered. T0547 339 :LF 1knwA 287 :VK T0547 342 :Q 1knwA 290 :M T0547 344 :YAE 1knwA 292 :SRH Number of specific fragments extracted= 3 number of extra gaps= 3 total=41517 # 1t0tV.338.146 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)Y344 (1t0tV)N153 because G (3-10) conformation "forbidden" or filtered. T0547 338 :ELFSQE 1t0tV 147 :DKRRQG T0547 345 :AE 1t0tV 154 :DN Number of specific fragments extracted= 2 number of extra gaps= 1 total=41519 # 1pfbA.338.10 read from T0547.t2k.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1pfbA)G39 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQE 1pfbA 34 :KRVKK T0547 345 :AE 1pfbA 40 :VV Number of specific fragments extracted= 2 number of extra gaps= 2 total=41521 # 1f60A.338.249 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E338 (1f60A)D250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1f60A)G256 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQE 1f60A 251 :VYKIG T0547 345 :AE 1f60A 257 :IG Number of specific fragments extracted= 2 number of extra gaps= 2 total=41523 # 1r7mA.338.187 read from T0547.t2k.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)E338 (1r7mA)Y188 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1r7mA)N192 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1r7mA)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. T0547 339 :LFS 1r7mA 189 :VKI T0547 345 :AE 1r7mA 195 :KP Number of specific fragments extracted= 2 number of extra gaps= 2 total=41525 # 1xjvA.338.164 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)Y344 (1xjvA)G176 because T (delta_L) conformation "forbidden" or filtered. T0547 338 :ELFSQE 1xjvA 170 :GKAEVD T0547 345 :AE 1xjvA 177 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=41527 # 1jb0E.338.24 read from T0547.t2k.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1jb0E)T29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1jb0E)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFS 1jb0E 26 :VDQ T0547 343 :E 1jb0E 30 :P T0547 345 :AE 1jb0E 32 :VK Number of specific fragments extracted= 3 number of extra gaps= 3 total=41530 # 1i8dA.338.13 read from T0547.t2k.many.frag # found chain 1i8dA in template set T0547 338 :ELFSQEYAE 1i8dA 14 :SIDEKPNFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=41531 # 1uscA.338.123 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)E343 (1uscA)G129 because S (epsilon) conformation "forbidden" or filtered. T0547 338 :ELFSQ 1uscA 124 :EVHTF T0547 344 :YAE 1uscA 130 :DHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=41533 # 2aneA.338.85 read from T0547.t2k.many.frag # found chain 2aneA in template set T0547 338 :ELFSQEYAE 2aneA 79 :QMLKLPDGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=41534 # 1fl0A.338.14 read from T0547.t2k.many.frag # found chain 1fl0A in training set T0547 338 :ELFSQEYAE 1fl0A 164 :TARKHPDAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=41535 # 1cqmA.338.38 read from T0547.t2k.many.frag # found chain 1cqmA in training set Warning: unaligning (T0547)E343 (1cqmA)G44 because S (epsilon) conformation "forbidden" or filtered. T0547 338 :ELFSQ 1cqmA 39 :KVAIL T0547 344 :YAE 1cqmA 45 :LRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=41537 # 1t6sA.338.138 read from T0547.t2k.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)E338 (1t6sA)G139 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1t6sA)S143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1t6sA)P144 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFS 1t6sA 140 :RAD T0547 344 :YAE 1t6sA 145 :GRP Number of specific fragments extracted= 2 number of extra gaps= 2 total=41539 # 1c4qA.338.10 read from T0547.t2k.many.frag # found chain 1c4qA in training set Warning: unaligning (T0547)E338 (1c4qA)Y111 because Y (epsilon') conformation "forbidden" or filtered. T0547 339 :LFSQEYAE 1c4qA 112 :TKYNDDDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=41540 # 1rcqA.338.240 read from T0547.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A345 (1rcqA)G248 because T (delta_L) conformation "forbidden" or filtered. T0547 338 :ELFSQEY 1rcqA 241 :SVRDLPA T0547 346 :E 1rcqA 249 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=41542 # 1vmbA.338.56 read from T0547.t2k.many.frag # found chain 1vmbA in training set T0547 338 :ELFSQEYAE 1vmbA 45 :KVERMGMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=41543 # 1nqeA.338.155 read from T0547.t2k.many.frag # found chain 1nqeA in template set Warning: unaligning (T0547)E343 (1nqeA)G161 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1nqeA)K163 because T (delta_L) conformation "forbidden" or filtered. T0547 338 :ELFSQ 1nqeA 156 :TQQQL T0547 344 :Y 1nqeA 162 :D T0547 346 :E 1nqeA 164 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=41546 # 1c8uA.338.78 read from T0547.t2k.many.frag # found chain 1c8uA in template set T0547 338 :ELFSQEYAE 1c8uA 80 :TLRDGNSFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=41547 # 1wocA.338.14 read from T0547.t2k.many.frag # found chain 1wocA in template set T0547 338 :ELFSQEYAE 1wocA 16 :LRKVSPSGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=41548 # 1ddwA.338.14 read from T0547.t2k.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)Y344 (1ddwA)K21 because L (left) conformation "forbidden" or filtered. T0547 338 :ELFSQE 1ddwA 15 :QIDPNT T0547 345 :AE 1ddwA 22 :KN Number of specific fragments extracted= 2 number of extra gaps= 1 total=41550 # 1xxaA.338.9 read from T0547.t2k.many.frag # found chain 1xxaA in template set Warning: unaligning (T0547)S341 (1xxaA)Y91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1xxaA)V95 because Y (epsilon') conformation "forbidden" or filtered. T0547 338 :ELF 1xxaA 88 :DID T0547 342 :QEY 1xxaA 92 :NDA T0547 346 :E 1xxaA 96 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=41553 # 1n4wA.338.246 read from T0547.t2k.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)Y344 (1n4wA)D258 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1n4wA)G260 because S (epsilon) conformation "forbidden" or filtered. T0547 338 :ELFSQE 1n4wA 252 :TIRQTK T0547 345 :A 1n4wA 259 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=41555 # 3prn.338.36 read from T0547.t2k.many.frag # found chain 3prn in template set Warning: unaligning (T0547)A345 (3prn)G44 because T (delta_L) conformation "forbidden" or filtered. T0547 338 :ELFSQEY 3prn 37 :GTTETDQ T0547 346 :E 3prn 45 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=41557 # 1w61A.338.338 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)E338 (1w61A)G339 because Y (epsilon') conformation "forbidden" or filtered. T0547 339 :LFSQEYAE 1w61A 340 :EERIPGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=41558 # 1twfH.338.13 read from T0547.t2k.many.frag # found chain 1twfH in template set Warning: unaligning (T0547)L339 (1twfH)V15 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1twfH)G18 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1twfH)R19 because T (delta_L) conformation "forbidden" or filtered. T0547 338 :E 1twfH 14 :E T0547 340 :FS 1twfH 16 :DP T0547 344 :YAE 1twfH 20 :YNK Number of specific fragments extracted= 3 number of extra gaps= 2 total=41561 # 2f06A.338.37 read from T0547.t2k.many.frag # found chain 2f06A in template set Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (2f06A)I44 T0547 338 :ELFSQEYA 2f06A 35 :CIAENADF Number of specific fragments extracted= 1 number of extra gaps= 1 total=41562 # 1j7xA.338.99 read from T0547.t2k.many.frag # found chain 1j7xA in training set Warning: unaligning (T0547)S341 (1j7xA)I104 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1j7xA)N108 because L (left) conformation "forbidden" or filtered. T0547 338 :ELF 1j7xA 101 :KVS T0547 342 :QEY 1j7xA 105 :LPG T0547 346 :E 1j7xA 109 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=41565 # 1ten.338.8 read from T0547.t2k.many.frag # found chain 1ten in training set Warning: unaligning (T0547)F340 (1ten)K812 because Y (epsilon') conformation "forbidden" or filtered. T0547 338 :EL 1ten 810 :EV T0547 341 :SQEYAE 1ten 813 :DVTDTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=41567 # 1z6fA.338.240 read from T0547.t2k.many.frag # found chain 1z6fA in training set T0547 338 :ELFSQEYAE 1z6fA 241 :GGRTFKGRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=41568 1vqoB expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoB:# 1vqoB.338.88 read from T0547.t2k.many.frag # adding 1vqoB to template set # found chain 1vqoB in template set Warning: unaligning (T0547)E338 (1vqoB)E88 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1vqoB)G93 because S (epsilon) conformation "forbidden" or filtered. T0547 339 :LFSQ 1vqoB 89 :DTPY T0547 344 :YAE 1vqoB 94 :QRP Number of specific fragments extracted= 2 number of extra gaps= 2 total=41570 # 1knwA.339.286 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q342 (1knwA)M290 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1knwA)G291 because S (epsilon) conformation "forbidden" or filtered. T0547 339 :LFS 1knwA 287 :VKQ T0547 344 :YAEN 1knwA 292 :SRHF Number of specific fragments extracted= 2 number of extra gaps= 1 total=41572 # 1r7mA.339.188 read from T0547.t2k.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)E343 (1r7mA)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. T0547 339 :LFSQ 1r7mA 189 :VKIN T0547 345 :AEN 1r7mA 195 :KPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=41574 # 1f60A.339.250 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)N347 (1f60A)T259 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFSQEYAE 1f60A 251 :VYKIGGIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=41575 # 1t0tV.339.147 read from T0547.t2k.many.frag # found chain 1t0tV in training set T0547 339 :LFSQEYAEN 1t0tV 148 :KRRQGNDNW Number of specific fragments extracted= 1 number of extra gaps= 0 total=41576 # 1pfbA.339.11 read from T0547.t2k.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. T0547 339 :LFSQ 1pfbA 34 :KRVK T0547 344 :YAEN 1pfbA 39 :GVVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=41578 # 1xjvA.339.165 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)E346 (1xjvA)S178 because E (beta_S) conformation "forbidden" or filtered. T0547 339 :LFSQEYA 1xjvA 171 :KAEVDGA T0547 347 :N 1xjvA 179 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=41580 # 1jb0E.339.25 read from T0547.t2k.many.frag # found chain 1jb0E in template set T0547 339 :LFSQEYAEN 1jb0E 26 :VDQTPGVKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=41581 # 1t6sA.339.139 read from T0547.t2k.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)Y344 (1t6sA)G145 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQE 1t6sA 140 :RADSP T0547 345 :AEN 1t6sA 146 :RPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=41583 # 1fl0A.339.15 read from T0547.t2k.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)A345 (1fl0A)A171 because D (zeta) conformation "forbidden" or filtered. T0547 339 :LFSQEY 1fl0A 165 :ARKHPD T0547 346 :EN 1fl0A 172 :DS Number of specific fragments extracted= 2 number of extra gaps= 1 total=41585 # 1i8dA.339.14 read from T0547.t2k.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)S341 (1i8dA)E17 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LF 1i8dA 15 :ID T0547 342 :QEYAEN 1i8dA 18 :KPNFRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=41587 # 1uscA.339.124 read from T0547.t2k.many.frag # found chain 1uscA in training set T0547 339 :LFSQEYAEN 1uscA 125 :VHTFGDHDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=41588 # 1cqmA.339.39 read from T0547.t2k.many.frag # found chain 1cqmA in training set Warning: unaligning (T0547)E343 (1cqmA)G44 because S (epsilon) conformation "forbidden" or filtered. T0547 339 :LFSQ 1cqmA 40 :VAIL T0547 344 :YAEN 1cqmA 45 :LRRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=41590 # 1vmbA.339.57 read from T0547.t2k.many.frag # found chain 1vmbA in training set T0547 339 :LFSQEYAEN 1vmbA 46 :VERMGMRKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=41591 # 1ddwA.339.15 read from T0547.t2k.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)Y344 (1ddwA)K21 because L (left) conformation "forbidden" or filtered. T0547 339 :LFSQE 1ddwA 16 :IDPNT T0547 345 :AEN 1ddwA 22 :KNW Number of specific fragments extracted= 2 number of extra gaps= 1 total=41593 # 2aneA.339.86 read from T0547.t2k.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)A345 (2aneA)G86 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQEY 2aneA 80 :MLKLPD T0547 346 :EN 2aneA 87 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41595 # 1c4qA.339.11 read from T0547.t2k.many.frag # found chain 1c4qA in training set Warning: unaligning (T0547)Y344 (1c4qA)D117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1c4qA)D118 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1c4qA)T119 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFSQE 1c4qA 112 :TKYND T0547 347 :N 1c4qA 120 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=41597 # 1nqeA.339.156 read from T0547.t2k.many.frag # found chain 1nqeA in template set Warning: unaligning (T0547)A345 (1nqeA)K163 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQEY 1nqeA 157 :QQQLGD T0547 346 :EN 1nqeA 164 :TR Number of specific fragments extracted= 2 number of extra gaps= 1 total=41599 # 2f06A.339.38 read from T0547.t2k.many.frag # found chain 2f06A in template set Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (2f06A)I44 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (2f06A)I44 T0547 339 :LFSQEYA 2f06A 36 :IAENADF Number of specific fragments extracted= 1 number of extra gaps= 1 total=41600 1omhA expands to /projects/compbio/data/pdb/1omh.pdb.gz 1omhA:# 1omhA.339.127 read from T0547.t2k.many.frag # adding 1omhA to template set # found chain 1omhA in template set Warning: unaligning (T0547)Y344 (1omhA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQE 1omhA 128 :RQKIQ T0547 345 :AEN 1omhA 134 :KTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=41602 # 1ten.339.9 read from T0547.t2k.many.frag # found chain 1ten in training set Warning: unaligning (T0547)N347 (1ten)A819 because Y (epsilon') conformation "forbidden" or filtered. T0547 339 :LFSQEYAE 1ten 811 :VKDVTDTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=41603 # 1j7xA.339.100 read from T0547.t2k.many.frag # found chain 1j7xA in training set Warning: unaligning (T0547)A345 (1j7xA)N108 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1j7xA)I109 because E (beta_S) conformation "forbidden" or filtered. T0547 339 :LFSQEY 1j7xA 102 :VSILPG T0547 347 :N 1j7xA 110 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=41605 # 1xxaA.339.10 read from T0547.t2k.many.frag # found chain 1xxaA in template set Warning: unaligning (T0547)S341 (1xxaA)Y91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1xxaA)V95 because Y (epsilon') conformation "forbidden" or filtered. T0547 339 :LF 1xxaA 89 :ID T0547 342 :QEY 1xxaA 92 :NDA T0547 346 :EN 1xxaA 96 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=41608 # 2arcA.339.49 read from T0547.t2k.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)Y344 (2arcA)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQE 2arcA 56 :VVKNQ T0547 345 :AEN 2arcA 62 :REF Number of specific fragments extracted= 2 number of extra gaps= 1 total=41610 # 1vqoB.339.89 read from T0547.t2k.many.frag # found chain 1vqoB in template set Warning: unaligning (T0547)E343 (1vqoB)G93 because S (epsilon) conformation "forbidden" or filtered. T0547 339 :LFSQ 1vqoB 89 :DTPY T0547 344 :YAEN 1vqoB 94 :QRPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=41612 # 1xxaA.339.45 read from T0547.t2k.many.frag # found chain 1xxaA in template set T0547 339 :LFSQEYAEN 1xxaA 124 :TIAGDDTIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=41613 # 1vpsA.339.7 read from T0547.t2k.many.frag # found chain 1vpsA in template set Warning: unaligning (T0547)E343 (1vpsA)P43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1vpsA)D44 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1vpsA)T47 because Y (epsilon') conformation "forbidden" or filtered. T0547 339 :LFSQ 1vpsA 39 :LVTG T0547 345 :AE 1vpsA 45 :SV Number of specific fragments extracted= 2 number of extra gaps= 2 total=41615 1xo0A expands to /projects/compbio/data/pdb/1xo0.pdb.gz 1xo0A:# 1xo0A.339.165 read from T0547.t2k.many.frag # adding 1xo0A to template set # found chain 1xo0A in template set Warning: unaligning (T0547)E343 (1xo0A)D189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1xo0A)G190 because L (left) conformation "forbidden" or filtered. T0547 339 :LFSQ 1xo0A 185 :ISRT T0547 345 :AEN 1xo0A 191 :GRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=41617 # 1wocA.339.15 read from T0547.t2k.many.frag # found chain 1wocA in template set Warning: unaligning (T0547)E346 (1wocA)I24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1wocA)P25 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFSQEYA 1wocA 17 :RKVSPSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=41618 # 1dc1A.339.161 read from T0547.t2k.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0547)N347 (1dc1A)W170 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :L 1dc1A 162 :S T0547 342 :QEYAE 1dc1A 165 :KKYTN Number of specific fragments extracted= 2 number of extra gaps= 2 total=41620 # 1twfH.339.14 read from T0547.t2k.many.frag # found chain 1twfH in template set Warning: unaligning (T0547)E343 (1twfH)R19 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQ 1twfH 15 :VDPG T0547 344 :YAEN 1twfH 20 :YNKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41622 # 1knwA.340.287 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E343 (1knwA)G291 because S (epsilon) conformation "forbidden" or filtered. T0547 340 :FSQ 1knwA 288 :KQM T0547 344 :YAENK 1knwA 292 :SRHFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41624 # 1r7mA.340.189 read from T0547.t2k.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)E343 (1r7mA)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. T0547 340 :FSQ 1r7mA 190 :KIN T0547 345 :AENK 1r7mA 195 :KPII Number of specific fragments extracted= 2 number of extra gaps= 1 total=41626 # 1f60A.340.251 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E346 (1f60A)G258 because S (epsilon) conformation "forbidden" or filtered. T0547 340 :FSQEYA 1f60A 252 :YKIGGI T0547 347 :NK 1f60A 259 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41628 # 1pfbA.340.12 read from T0547.t2k.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. T0547 340 :FSQ 1pfbA 35 :RVK T0547 344 :YAENK 1pfbA 39 :GVVEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=41630 # 1t0tV.340.148 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)E343 (1t0tV)G152 because S (epsilon) conformation "forbidden" or filtered. T0547 340 :FSQ 1t0tV 149 :RRQ T0547 344 :YAENK 1t0tV 153 :NDNWY Number of specific fragments extracted= 2 number of extra gaps= 1 total=41632 # 1t6sA.340.140 read from T0547.t2k.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)Q342 (1t6sA)S143 because Y (epsilon') conformation "forbidden" or filtered. T0547 340 :FS 1t6sA 141 :AD T0547 343 :EYAENK 1t6sA 144 :PGRPLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=41634 # 1jb0E.340.26 read from T0547.t2k.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)E343 (1jb0E)P30 because P (beta_P) conformation "forbidden" or filtered. T0547 340 :FSQ 1jb0E 27 :DQT T0547 344 :YAENK 1jb0E 31 :GVKYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=41636 # 1ddwA.340.16 read from T0547.t2k.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)Y344 (1ddwA)K21 because L (left) conformation "forbidden" or filtered. T0547 340 :FSQE 1ddwA 17 :DPNT T0547 345 :AENK 1ddwA 22 :KNWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41638 # 1fl0A.340.16 read from T0547.t2k.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)A345 (1fl0A)A171 because D (zeta) conformation "forbidden" or filtered. T0547 340 :FSQEY 1fl0A 166 :RKHPD T0547 346 :ENK 1fl0A 172 :DSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=41640 # 1vmbA.340.58 read from T0547.t2k.many.frag # found chain 1vmbA in training set T0547 340 :FSQEYAENK 1vmbA 47 :ERMGMRKFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=41641 # 1omhA.340.128 read from T0547.t2k.many.frag # found chain 1omhA in template set T0547 340 :FSQEYAENK 1omhA 129 :QKIQGKTRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=41642 # 1xjvA.340.166 read from T0547.t2k.many.frag # found chain 1xjvA in training set T0547 340 :FSQEYAENK 1xjvA 172 :AEVDGASFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=41643 1bob expands to /projects/compbio/data/pdb/1bob.pdb.gz 1bob:Warning: there is no chain 1bob will retry with 1bobA # 1bob.340.126 read from T0547.t2k.many.frag # adding 1bob to template set # found chain 1bob in template set Warning: unaligning (T0547)E343 (1bob)N130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1bob)G131 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1bob)E133 because P (beta_P) conformation "forbidden" or filtered. T0547 340 :FSQ 1bob 127 :YSL T0547 345 :A 1bob 132 :E T0547 347 :NK 1bob 134 :FV Number of specific fragments extracted= 3 number of extra gaps= 2 total=41646 # 1gx5A.340.373 read from T0547.t2k.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)Y344 (1gx5A)G378 because T (delta_L) conformation "forbidden" or filtered. T0547 340 :FSQE 1gx5A 374 :HDAS T0547 345 :AENK 1gx5A 379 :KRVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=41648 # 2f06A.340.39 read from T0547.t2k.many.frag # found chain 2f06A in template set Warning: unaligning (T0547)Q342 (2f06A)N39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (2f06A)I44 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (2f06A)I44 T0547 340 :FS 2f06A 37 :AE T0547 343 :EYA 2f06A 40 :ADF T0547 348 :K 2f06A 45 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=41651 # 1c4qA.340.12 read from T0547.t2k.many.frag # found chain 1c4qA in training set Warning: unaligning (T0547)N347 (1c4qA)F120 because E (beta_S) conformation "forbidden" or filtered. T0547 340 :FSQEYAE 1c4qA 113 :KYNDDDT T0547 348 :K 1c4qA 121 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=41653 # 1cqmA.340.40 read from T0547.t2k.many.frag # found chain 1cqmA in training set Warning: unaligning (T0547)E343 (1cqmA)G44 because S (epsilon) conformation "forbidden" or filtered. T0547 340 :FSQ 1cqmA 41 :AIL T0547 344 :YAENK 1cqmA 45 :LRRLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=41655 # 2arcA.340.50 read from T0547.t2k.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)E343 (2arcA)Q60 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (2arcA)F64 because E (beta_S) conformation "forbidden" or filtered. T0547 340 :FSQ 2arcA 57 :VKN T0547 344 :YAE 2arcA 61 :GRE T0547 348 :K 2arcA 65 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=41658 # 1ten.340.10 read from T0547.t2k.many.frag # found chain 1ten in training set Warning: unaligning (T0547)S341 (1ten)D813 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1ten)T817 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1ten)A819 because Y (epsilon') conformation "forbidden" or filtered. T0547 340 :F 1ten 812 :K T0547 342 :QEY 1ten 814 :VTD T0547 346 :E 1ten 818 :T T0547 348 :K 1ten 820 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=41662 2fimA expands to /projects/compbio/data/pdb/2fim.pdb.gz 2fimA:# 2fimA.340.147 read from T0547.t2k.many.frag # adding 2fimA to template set # found chain 2fimA in template set Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fimA)R366 T0547 346 :ENK 2fimA 367 :RMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=41663 # 1xxaA.340.11 read from T0547.t2k.many.frag # found chain 1xxaA in template set Warning: unaligning (T0547)S341 (1xxaA)Y91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1xxaA)N92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1xxaA)V96 because E (beta_S) conformation "forbidden" or filtered. T0547 340 :F 1xxaA 90 :D T0547 343 :EYA 1xxaA 93 :DAV T0547 347 :NK 1xxaA 97 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=41666 # 1xxaA.340.46 read from T0547.t2k.many.frag # found chain 1xxaA in template set Warning: unaligning (T0547)Q342 (1xxaA)G127 because Y (epsilon') conformation "forbidden" or filtered. T0547 340 :FS 1xxaA 125 :IA T0547 343 :EYAENK 1xxaA 128 :DDTIFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=41668 # 1j7xA.340.101 read from T0547.t2k.many.frag # found chain 1j7xA in training set Warning: unaligning (T0547)Y344 (1j7xA)G107 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1j7xA)N108 because L (left) conformation "forbidden" or filtered. T0547 340 :FSQE 1j7xA 103 :SILP T0547 346 :ENK 1j7xA 109 :IGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=41670 # 1wdvA.340.48 read from T0547.t2k.many.frag # found chain 1wdvA in training set T0547 340 :FSQEYAENK 1wdvA 49 :LDNAGGVYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=41671 # 1nqeA.340.157 read from T0547.t2k.many.frag # found chain 1nqeA in template set Warning: unaligning (T0547)S341 (1nqeA)Q159 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1nqeA)G161 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1nqeA)V166 because E (beta_S) conformation "forbidden" or filtered. T0547 340 :F 1nqeA 158 :Q T0547 342 :Q 1nqeA 160 :L T0547 344 :YAEN 1nqeA 162 :DKTR Number of specific fragments extracted= 3 number of extra gaps= 3 total=41674 # 1i8dA.340.15 read from T0547.t2k.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)Q342 (1i8dA)K18 because E (beta_S) conformation "forbidden" or filtered. T0547 340 :FS 1i8dA 16 :DE T0547 343 :EYAENK 1i8dA 19 :PNFRTH Number of specific fragments extracted= 2 number of extra gaps= 1 total=41676 # 1xo0A.340.166 read from T0547.t2k.many.frag # found chain 1xo0A in template set Warning: unaligning (T0547)Y344 (1xo0A)G190 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1xo0A)G191 because T (delta_L) conformation "forbidden" or filtered. T0547 340 :FSQE 1xo0A 186 :SRTD T0547 346 :ENK 1xo0A 192 :RML Number of specific fragments extracted= 2 number of extra gaps= 1 total=41678 1jr7A expands to /projects/compbio/data/pdb/1jr7.pdb.gz 1jr7A:# 1jr7A.340.166 read from T0547.t2k.many.frag # adding 1jr7A to template set # found chain 1jr7A in template set Warning: unaligning (T0547)S341 (1jr7A)N182 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1jr7A)G185 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1jr7A)G186 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1jr7A)S188 because P (beta_P) conformation "forbidden" or filtered. T0547 340 :F 1jr7A 181 :Q T0547 342 :QE 1jr7A 183 :MQ T0547 346 :E 1jr7A 187 :N T0547 348 :K 1jr7A 189 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=41682 # 1f3uA.340.45 read from T0547.t2k.many.frag # found chain 1f3uA in training set Warning: unaligning (T0547)S341 (1f3uA)T48 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1f3uA)G50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1f3uA)S55 because Y (epsilon') conformation "forbidden" or filtered. T0547 340 :F 1f3uA 47 :K T0547 342 :Q 1f3uA 49 :Q T0547 344 :YAEN 1f3uA 51 :RTEV Number of specific fragments extracted= 3 number of extra gaps= 3 total=41685 1yukB expands to /projects/compbio/data/pdb/1yuk.pdb.gz 1yukB:# 1yukB.340.54 read from T0547.t2k.many.frag # adding 1yukB to template set # found chain 1yukB in template set Warning: unaligning (T0547)A345 (1yukB)Q402 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1yukB)F404 because Y (epsilon') conformation "forbidden" or filtered. T0547 340 :FSQEY 1yukB 397 :ECIQE T0547 346 :E 1yukB 403 :S T0547 348 :K 1yukB 405 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=41688 # 1knwA.341.288 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N347 (1knwA)F295 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1knwA)V296 because E (beta_S) conformation "forbidden" or filtered. T0547 341 :SQEYAE 1knwA 289 :QMGSRH T0547 349 :L 1knwA 297 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=41690 # 1r7mA.341.190 read from T0547.t2k.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)Q342 (1r7mA)N192 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1r7mA)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. T0547 341 :S 1r7mA 191 :I T0547 345 :AENKL 1r7mA 195 :KPIIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=41692 # 1gx5A.341.374 read from T0547.t2k.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)S341 (1gx5A)D375 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1gx5A)V381 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. T0547 342 :QEYAE 1gx5A 376 :ASGKR T0547 348 :K 1gx5A 382 :Y Number of specific fragments extracted= 2 number of extra gaps= 3 total=41694 # 1bob.341.127 read from T0547.t2k.many.frag # found chain 1bob in template set Warning: unaligning (T0547)E343 (1bob)N130 because L (left) conformation "forbidden" or filtered. T0547 341 :SQ 1bob 128 :SL T0547 344 :YAENKL 1bob 131 :GEEFVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41696 # 1t6sA.341.141 read from T0547.t2k.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)Q342 (1t6sA)S143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1t6sA)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1t6sA)R146 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1t6sA)P147 because P (beta_P) conformation "forbidden" or filtered. T0547 341 :S 1t6sA 142 :D T0547 343 :E 1t6sA 144 :P T0547 347 :NKL 1t6sA 148 :LQY Number of specific fragments extracted= 3 number of extra gaps= 2 total=41699 # 1wdvA.341.49 read from T0547.t2k.many.frag # found chain 1wdvA in training set T0547 341 :SQEYAENKL 1wdvA 50 :DNAGGVYAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=41700 # 1ddwA.341.17 read from T0547.t2k.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)Y344 (1ddwA)K21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1ddwA)W24 because P (beta_P) conformation "forbidden" or filtered. T0547 341 :SQE 1ddwA 18 :PNT T0547 345 :AE 1ddwA 22 :KN T0547 348 :KL 1ddwA 25 :VP Number of specific fragments extracted= 3 number of extra gaps= 2 total=41703 # 2fimA.341.148 read from T0547.t2k.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fimA)R366 T0547 346 :ENKL 2fimA 367 :RMTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=41704 # 1pfbA.341.13 read from T0547.t2k.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. T0547 341 :SQ 1pfbA 36 :VK T0547 344 :YAENKL 1pfbA 39 :GVVEYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=41706 # 1f60A.341.252 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)Y344 (1f60A)G256 because T (delta_L) conformation "forbidden" or filtered. T0547 341 :SQE 1f60A 253 :KIG T0547 345 :AENKL 1f60A 257 :IGTVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=41708 # 1jr7A.341.167 read from T0547.t2k.many.frag # found chain 1jr7A in template set Warning: unaligning (T0547)S341 (1jr7A)N182 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1jr7A)G186 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1jr7A)S188 because P (beta_P) conformation "forbidden" or filtered. T0547 342 :QEY 1jr7A 183 :MQG T0547 346 :E 1jr7A 187 :N T0547 348 :KL 1jr7A 189 :LL Number of specific fragments extracted= 3 number of extra gaps= 3 total=41711 # 1c4qA.341.13 read from T0547.t2k.many.frag # found chain 1c4qA in training set Warning: unaligning (T0547)A345 (1c4qA)D118 because T (delta_L) conformation "forbidden" or filtered. T0547 341 :SQEY 1c4qA 114 :YNDD T0547 346 :ENKL 1c4qA 119 :TFTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41713 # 1jb0E.341.27 read from T0547.t2k.many.frag # found chain 1jb0E in template set T0547 341 :SQEYAENKL 1jb0E 28 :QTPGVKYPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=41714 # 2f06A.341.40 read from T0547.t2k.many.frag # found chain 2f06A in template set Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (2f06A)I44 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (2f06A)I44 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE in next template residue (2f06A)G47 T0547 341 :SQEYA 2f06A 38 :ENADF T0547 348 :K 2f06A 45 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=41716 # 2bjnA.341.87 read from T0547.t2k.many.frag # found chain 2bjnA in training set Warning: unaligning (T0547)K348 (2bjnA)V95 because E (beta_S) conformation "forbidden" or filtered. T0547 341 :SQEYAEN 2bjnA 88 :TNHQGIY T0547 349 :L 2bjnA 96 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=41718 # 1omhA.341.129 read from T0547.t2k.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)Q342 (1omhA)I131 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1omhA)Q132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1omhA)K134 because P (beta_P) conformation "forbidden" or filtered. T0547 341 :S 1omhA 130 :K T0547 344 :Y 1omhA 133 :G T0547 346 :ENKL 1omhA 135 :TRIE Number of specific fragments extracted= 3 number of extra gaps= 2 total=41721 # 1yukB.341.55 read from T0547.t2k.many.frag # found chain 1yukB in template set Warning: unaligning (T0547)Q342 (1yukB)I399 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1yukB)F404 because Y (epsilon') conformation "forbidden" or filtered. T0547 341 :S 1yukB 398 :C T0547 343 :EYAE 1yukB 400 :QEQS T0547 348 :KL 1yukB 405 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=41724 # 1f3uA.341.46 read from T0547.t2k.many.frag # found chain 1f3uA in training set Warning: unaligning (T0547)Q342 (1f3uA)Q49 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1f3uA)G50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1f3uA)T52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1f3uA)E53 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1f3uA)S55 because Y (epsilon') conformation "forbidden" or filtered. T0547 341 :S 1f3uA 48 :T T0547 344 :Y 1f3uA 51 :R T0547 347 :N 1f3uA 54 :V T0547 349 :L 1f3uA 56 :F Number of specific fragments extracted= 4 number of extra gaps= 3 total=41728 2fkcA expands to /projects/compbio/data/pdb/2fkc.pdb.gz 2fkcA:Skipped atom 1706, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1708, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1710, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1712, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1714, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1716, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1718, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1720, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1722, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1724, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1726, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 2642, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 2644, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 2646, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 2648, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 2650, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 2652, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 2654, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 2656, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 2658, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 2660, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 2662, because occupancy 0.500 <= existing 0.500 in 2fkcA # 2fkcA.341.181 read from T0547.t2k.many.frag # adding 2fkcA to template set # found chain 2fkcA in template set Warning: unaligning (T0547)Q342 (2fkcA)S183 because Y (epsilon') conformation "forbidden" or filtered. T0547 341 :S 2fkcA 182 :V T0547 343 :EYAENKL 2fkcA 184 :NNARWIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=41730 1pa1A expands to /projects/compbio/data/pdb/1pa1.pdb.gz 1pa1A:Skipped atom 52, because occupancy 0.460 <= existing 0.490 in 1pa1A Skipped atom 56, because occupancy 0.570 <= existing 0.570 in 1pa1A Skipped atom 58, because occupancy 0.500 <= existing 0.550 in 1pa1A Skipped atom 60, because occupancy 0.510 <= existing 0.540 in 1pa1A Skipped atom 62, because occupancy 0.410 <= existing 0.430 in 1pa1A Skipped atom 64, because occupancy 0.450 <= existing 0.470 in 1pa1A Skipped atom 66, because occupancy 0.470 <= existing 0.470 in 1pa1A Skipped atom 443, because occupancy 0.540 <= existing 0.540 in 1pa1A Skipped atom 447, because occupancy 0.460 <= existing 0.500 in 1pa1A Skipped atom 451, because occupancy 0.440 <= existing 0.520 in 1pa1A Skipped atom 455, because occupancy 0.260 <= existing 0.420 in 1pa1A Skipped atom 548, because occupancy 0.500 <= existing 0.580 in 1pa1A Skipped atom 550, because occupancy 0.380 <= existing 0.720 in 1pa1A Skipped atom 554, because occupancy 0.190 <= existing 0.370 in 1pa1A Skipped atom 558, because occupancy 0.340 <= existing 0.630 in 1pa1A Skipped atom 560, because occupancy 0.350 <= existing 0.570 in 1pa1A Skipped atom 562, because occupancy 0.280 <= existing 0.590 in 1pa1A Skipped atom 564, because occupancy 0.380 <= existing 0.630 in 1pa1A Skipped atom 566, because occupancy 0.380 <= existing 0.470 in 1pa1A Skipped atom 570, because occupancy 0.420 <= existing 0.890 in 1pa1A Skipped atom 572, because occupancy 0.270 <= existing 0.420 in 1pa1A Skipped atom 574, because occupancy 0.190 <= existing 0.620 in 1pa1A Skipped atom 578, because occupancy 0.560 <= existing 0.670 in 1pa1A Skipped atom 580, because occupancy 0.610 <= existing 0.990 in 1pa1A Skipped atom 590, because occupancy 0.430 <= existing 0.580 in 1pa1A Skipped atom 592, because occupancy 0.320 <= existing 0.500 in 1pa1A Skipped atom 594, because occupancy 0.330 <= existing 0.490 in 1pa1A Skipped atom 596, because occupancy 0.210 <= existing 0.510 in 1pa1A Skipped atom 598, because occupancy 0.160 <= existing 0.270 in 1pa1A Skipped atom 606, because occupancy 0.300 <= existing 0.480 in 1pa1A Skipped atom 608, because occupancy 0.090 <= existing 0.300 in 1pa1A Skipped atom 610, because occupancy 0.090 <= existing 0.470 in 1pa1A Skipped atom 618, because occupancy 0.300 <= existing 0.310 in 1pa1A Skipped atom 805, because occupancy 0.440 <= existing 0.570 in 1pa1A Skipped atom 971, because occupancy 0.480 <= existing 0.540 in 1pa1A Skipped atom 975, because occupancy 0.480 <= existing 0.480 in 1pa1A Skipped atom 977, because occupancy 0.440 <= existing 0.670 in 1pa1A Skipped atom 1079, because occupancy 0.440 <= existing 0.460 in 1pa1A Skipped atom 1081, because occupancy 0.470 <= existing 0.590 in 1pa1A Skipped atom 1085, because occupancy 0.530 <= existing 0.530 in 1pa1A Skipped atom 1091, because occupancy 0.560 <= existing 0.610 in 1pa1A Skipped atom 1093, because occupancy 0.510 <= existing 0.540 in 1pa1A Skipped atom 1097, because occupancy 0.490 <= existing 0.560 in 1pa1A Skipped atom 1101, because occupancy 0.430 <= existing 0.470 in 1pa1A Skipped atom 1103, because occupancy 0.590 <= existing 0.660 in 1pa1A Skipped atom 1423, because occupancy 0.510 <= existing 0.550 in 1pa1A Skipped atom 1427, because occupancy 0.420 <= existing 0.550 in 1pa1A Skipped atom 1431, because occupancy 0.550 <= existing 0.620 in 1pa1A Skipped atom 1433, because occupancy 0.630 <= existing 0.750 in 1pa1A Skipped atom 1455, because occupancy 0.400 <= existing 0.620 in 1pa1A Skipped atom 1457, because occupancy 0.470 <= existing 0.540 in 1pa1A Skipped atom 1459, because occupancy 0.520 <= existing 0.630 in 1pa1A Skipped atom 1618, because occupancy 0.280 <= existing 0.760 in 1pa1A Skipped atom 1620, because occupancy 0.300 <= existing 0.730 in 1pa1A Skipped atom 1622, because occupancy 0.290 <= existing 0.630 in 1pa1A Skipped atom 1624, because occupancy 0.100 <= existing 0.670 in 1pa1A Skipped atom 1626, because occupancy 0.270 <= existing 0.590 in 1pa1A Skipped atom 1628, because occupancy 0.380 <= existing 0.670 in 1pa1A Skipped atom 1630, because occupancy 0.220 <= existing 0.830 in 1pa1A Skipped atom 1632, because occupancy 0.160 <= existing 0.870 in 1pa1A Skipped atom 1634, because occupancy 0.110 <= existing 0.710 in 1pa1A Skipped atom 1636, because occupancy 0.150 <= existing 0.760 in 1pa1A Skipped atom 1638, because occupancy 0.160 <= existing 0.760 in 1pa1A Skipped atom 1640, because occupancy 0.210 <= existing 0.740 in 1pa1A Skipped atom 1642, because occupancy 0.190 <= existing 0.830 in 1pa1A Skipped atom 1644, because occupancy 0.250 <= existing 0.670 in 1pa1A Skipped atom 1646, because occupancy 0.180 <= existing 0.890 in 1pa1A Skipped atom 1648, because occupancy 0.390 <= existing 0.910 in 1pa1A Skipped atom 1650, because occupancy 0.080 <= existing 0.800 in 1pa1A Skipped atom 1652, because occupancy 0.140 <= existing 0.790 in 1pa1A Skipped atom 1654, because occupancy 0.210 <= existing 0.810 in 1pa1A Skipped atom 1656, because occupancy 0.300 <= existing 0.730 in 1pa1A Skipped atom 1658, because occupancy 0.080 <= existing 0.890 in 1pa1A Skipped atom 1660, because occupancy 0.110 <= existing 0.940 in 1pa1A Skipped atom 1662, because occupancy 0.050 <= existing 0.910 in 1pa1A Skipped atom 1664, because occupancy 0.050 <= existing 0.870 in 1pa1A Skipped atom 1666, because occupancy 0.360 <= existing 0.820 in 1pa1A Skipped atom 1668, because occupancy 0.340 <= existing 0.880 in 1pa1A Skipped atom 1670, because occupancy 0.050 <= existing 0.860 in 1pa1A Skipped atom 1672, because occupancy 0.050 <= existing 0.830 in 1pa1A Skipped atom 1674, because occupancy 0.350 <= existing 0.810 in 1pa1A Skipped atom 1676, because occupancy 0.050 <= existing 0.830 in 1pa1A Skipped atom 1678, because occupancy 0.210 <= existing 0.650 in 1pa1A Skipped atom 1680, because occupancy 0.150 <= existing 0.800 in 1pa1A Skipped atom 1682, because occupancy 0.390 <= existing 0.840 in 1pa1A Skipped atom 1684, because occupancy 0.140 <= existing 0.760 in 1pa1A Skipped atom 1686, because occupancy 0.280 <= existing 0.700 in 1pa1A Skipped atom 1688, because occupancy 0.210 <= existing 0.760 in 1pa1A Skipped atom 1690, because occupancy 0.060 <= existing 0.660 in 1pa1A Skipped atom 1692, because occupancy 0.480 <= existing 0.620 in 1pa1A Skipped atom 1694, because occupancy 0.390 <= existing 0.710 in 1pa1A Skipped atom 1696, because occupancy 0.360 <= existing 0.810 in 1pa1A Skipped atom 1698, because occupancy 0.300 <= existing 0.680 in 1pa1A Skipped atom 1700, because occupancy 0.370 <= existing 0.510 in 1pa1A Skipped atom 1702, because occupancy 0.050 <= existing 0.470 in 1pa1A Skipped atom 1704, because occupancy 0.450 <= existing 0.840 in 1pa1A Skipped atom 1706, because occupancy 0.320 <= existing 0.960 in 1pa1A Skipped atom 1710, because occupancy 0.340 <= existing 0.650 in 1pa1A Skipped atom 1712, because occupancy 0.230 <= existing 0.870 in 1pa1A Skipped atom 1714, because occupancy 0.330 <= existing 0.610 in 1pa1A Skipped atom 1716, because occupancy 0.110 <= existing 0.420 in 1pa1A Skipped atom 1718, because occupancy 0.420 <= existing 0.500 in 1pa1A Skipped atom 1720, because occupancy 0.460 <= existing 0.580 in 1pa1A Skipped atom 1722, because occupancy 0.370 <= existing 0.500 in 1pa1A Skipped atom 1726, because occupancy 0.240 <= existing 0.750 in 1pa1A Skipped atom 1728, because occupancy 0.130 <= existing 0.810 in 1pa1A Skipped atom 1730, because occupancy 0.610 <= existing 0.750 in 1pa1A Skipped atom 1732, because occupancy 0.440 <= existing 0.800 in 1pa1A Skipped atom 1734, because occupancy 0.320 <= existing 0.760 in 1pa1A Skipped atom 1736, because occupancy 0.280 <= existing 0.830 in 1pa1A Skipped atom 1738, because occupancy 0.430 <= existing 0.760 in 1pa1A Skipped atom 1740, because occupancy 0.220 <= existing 0.720 in 1pa1A Skipped atom 1742, because occupancy 0.340 <= existing 0.840 in 1pa1A Skipped atom 1744, because occupancy 0.410 <= existing 0.930 in 1pa1A Skipped atom 1746, because occupancy 0.050 <= existing 0.670 in 1pa1A Skipped atom 1748, because occupancy 0.200 <= existing 0.900 in 1pa1A Skipped atom 1750, because occupancy 0.270 <= existing 0.870 in 1pa1A Skipped atom 1752, because occupancy 0.340 <= existing 0.730 in 1pa1A Skipped atom 1754, because occupancy 0.530 <= existing 0.660 in 1pa1A Skipped atom 1756, because occupancy 0.280 <= existing 0.780 in 1pa1A Skipped atom 1758, because occupancy 0.330 <= existing 0.790 in 1pa1A Skipped atom 1760, because occupancy 0.050 <= existing 0.780 in 1pa1A Skipped atom 1762, because occupancy 0.190 <= existing 0.690 in 1pa1A Skipped atom 1764, because occupancy 0.350 <= existing 0.740 in 1pa1A Skipped atom 1766, because occupancy 0.480 <= existing 0.540 in 1pa1A Skipped atom 1768, because occupancy 0.330 <= existing 0.740 in 1pa1A Skipped atom 1770, because occupancy 0.310 <= existing 0.850 in 1pa1A Skipped atom 1774, because occupancy 0.160 <= existing 0.260 in 1pa1A Skipped atom 1776, because occupancy 0.280 <= existing 0.750 in 1pa1A Skipped atom 1778, because occupancy 0.210 <= existing 0.780 in 1pa1A Skipped atom 1780, because occupancy 0.290 <= existing 0.700 in 1pa1A Skipped atom 1782, because occupancy 0.090 <= existing 0.630 in 1pa1A Skipped atom 1784, because occupancy 0.320 <= existing 0.660 in 1pa1A Skipped atom 1786, because occupancy 0.300 <= existing 0.710 in 1pa1A Skipped atom 1788, because occupancy 0.190 <= existing 0.620 in 1pa1A Skipped atom 1790, because occupancy 0.200 <= existing 0.730 in 1pa1A Skipped atom 1792, because occupancy 0.230 <= existing 0.710 in 1pa1A Skipped atom 1794, because occupancy 0.220 <= existing 0.550 in 1pa1A Skipped atom 1796, because occupancy 0.170 <= existing 0.690 in 1pa1A Skipped atom 1798, because occupancy 0.350 <= existing 0.710 in 1pa1A Skipped atom 1800, because occupancy 0.080 <= existing 0.680 in 1pa1A Skipped atom 1802, because occupancy 0.340 <= existing 0.750 in 1pa1A Skipped atom 1804, because occupancy 0.280 <= existing 0.800 in 1pa1A Skipped atom 1819, because occupancy 0.420 <= existing 0.470 in 1pa1A Skipped atom 1821, because occupancy 0.440 <= existing 0.450 in 1pa1A Skipped atom 2055, because occupancy 0.490 <= existing 0.540 in 1pa1A Skipped atom 2059, because occupancy 0.450 <= existing 0.480 in 1pa1A Skipped atom 2063, because occupancy 0.520 <= existing 0.530 in 1pa1A Skipped atom 2067, because occupancy 0.250 <= existing 0.750 in 1pa1A Skipped atom 2069, because occupancy 0.330 <= existing 0.710 in 1pa1A Skipped atom 2071, because occupancy 0.300 <= existing 0.680 in 1pa1A Skipped atom 2073, because occupancy 0.400 <= existing 0.710 in 1pa1A Skipped atom 2075, because occupancy 0.160 <= existing 0.700 in 1pa1A Skipped atom 2107, because occupancy 0.440 <= existing 0.640 in 1pa1A Skipped atom 2109, because occupancy 0.470 <= existing 0.560 in 1pa1A Skipped atom 2111, because occupancy 0.510 <= existing 0.510 in 1pa1A Skipped atom 2113, because occupancy 0.500 <= existing 0.530 in 1pa1A Skipped atom 2115, because occupancy 0.430 <= existing 0.530 in 1pa1A Skipped atom 2262, because occupancy 0.460 <= existing 0.510 in 1pa1A Skipped atom 2266, because occupancy 0.470 <= existing 0.520 in 1pa1A Skipped atom 2268, because occupancy 0.510 <= existing 0.520 in 1pa1A Skipped atom 2272, because occupancy 0.500 <= existing 0.660 in 1pa1A Skipped atom 2274, because occupancy 0.380 <= existing 0.570 in 1pa1A Skipped atom 2276, because occupancy 0.450 <= existing 0.590 in 1pa1A Skipped atom 2328, because occupancy 0.310 <= existing 0.320 in 1pa1A Skipped atom 2331, because occupancy 0.240 <= existing 0.400 in 1pa1A Skipped atom 2334, because occupancy 0.320 <= existing 0.340 in 1pa1A Skipped atom 2335, because occupancy 0.290 <= existing 0.340 in 1pa1A Skipped atom 2338, because occupancy 0.310 <= existing 0.350 in 1pa1A Skipped atom 2340, because occupancy 0.320 <= existing 0.320 in 1pa1A Skipped atom 2343, because occupancy 0.250 <= existing 0.410 in 1pa1A Skipped atom 2344, because occupancy 0.330 <= existing 0.410 in 1pa1A Skipped atom 2347, because occupancy 0.330 <= existing 0.350 in 1pa1A Skipped atom 2349, because occupancy 0.360 <= existing 0.460 in 1pa1A Skipped atom 2350, because occupancy 0.200 <= existing 0.460 in 1pa1A Skipped atom 2602, because occupancy 0.390 <= existing 0.400 in 1pa1A Skipped atom 2604, because occupancy 0.370 <= existing 0.370 in 1pa1A Skipped atom 2606, because occupancy 0.320 <= existing 0.330 in 1pa1A Skipped atom 2610, because occupancy 0.360 <= existing 0.410 in 1pa1A # 1pa1A.341.85 read from T0547.t2k.many.frag # adding 1pa1A to template set # found chain 1pa1A in template set Warning: unaligning (T0547)A345 (1pa1A)Q578 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1pa1A)Y581 because E (beta_S) conformation "forbidden" or filtered. T0547 341 :SQEY 1pa1A 574 :MEEA T0547 346 :EN 1pa1A 579 :RS T0547 349 :L 1pa1A 582 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=41733 # 2arcA.341.51 read from T0547.t2k.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)E343 (2arcA)Q60 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (2arcA)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 341 :SQ 2arcA 58 :KN T0547 345 :AENKL 2arcA 62 :REFVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=41735 1u7nA expands to /projects/compbio/data/pdb/1u7n.pdb.gz 1u7nA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 302, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 304, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 306, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 310, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 318, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1160, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1162, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1164, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1166, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1168, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1170, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1172, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1174, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1176, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1284, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1286, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1288, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1290, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1292, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1294, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1296, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1298, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1307, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1309, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1311, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1313, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1315, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1317, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1319, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1321, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1323, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1610, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1612, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1614, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1616, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1618, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1620, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1622, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1624, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1626, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1814, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1816, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1818, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1820, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1822, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1824, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1826, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1828, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2013, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2015, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2017, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2019, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2021, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2023, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2025, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2027, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2366, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2368, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2370, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2372, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2374, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2376, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2378, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2380, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2382, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2429, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2431, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2433, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2435, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2437, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2439, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2441, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2443, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2445, because occupancy 0.500 <= existing 0.500 in 1u7nA # 1u7nA.341.132 read from T0547.t2k.many.frag # adding 1u7nA to template set # found chain 1u7nA in template set Warning: unaligning (T0547)S341 (1u7nA)G130 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1u7nA)E131 because D (zeta) conformation "forbidden" or filtered. T0547 343 :EYAENKL 1u7nA 132 :PDKGFDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=41736 # 1h6fA.341.153 read from T0547.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)N347 (1h6fA)F258 because Y (epsilon') conformation "forbidden" or filtered. T0547 341 :SQEYAE 1h6fA 252 :LFPETE T0547 348 :KL 1h6fA 259 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=41738 # 1xo0A.341.167 read from T0547.t2k.many.frag # found chain 1xo0A in template set Warning: unaligning (T0547)E343 (1xo0A)D189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1xo0A)G190 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1xo0A)G191 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1xo0A)I195 because D (zeta) conformation "forbidden" or filtered. T0547 341 :SQ 1xo0A 187 :RT T0547 346 :ENK 1xo0A 192 :RML Number of specific fragments extracted= 2 number of extra gaps= 2 total=41740 # 1ten.341.11 read from T0547.t2k.many.frag # found chain 1ten in training set Warning: unaligning (T0547)S341 (1ten)D813 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1ten)A819 because Y (epsilon') conformation "forbidden" or filtered. T0547 342 :QEYAE 1ten 814 :VTDTT T0547 348 :KL 1ten 820 :LI Number of specific fragments extracted= 2 number of extra gaps= 2 total=41742 # 1t0tV.341.149 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)E346 (1t0tV)N155 because D (zeta) conformation "forbidden" or filtered. T0547 341 :SQEYA 1t0tV 150 :RQGND T0547 347 :NKL 1t0tV 156 :WYM Number of specific fragments extracted= 2 number of extra gaps= 1 total=41744 # 1bob.341.128 read from T0547.t2k.many.frag # found chain 1bob in template set Warning: unaligning (T0547)Q342 (1bob)N130 because L (left) conformation "forbidden" or filtered. T0547 341 :S 1bob 129 :L T0547 343 :EYAENKL 1bob 131 :GEEFVVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=41746 # 1w5rA.341.119 read from T0547.t2k.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)A345 (1w5rA)D121 because N (gamma') conformation "forbidden" or filtered. T0547 341 :SQEY 1w5rA 117 :VPGA T0547 346 :ENKL 1w5rA 122 :GRYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=41748 # 1yq2A.341.563 read from T0547.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)N347 (1yq2A)F569 because Y (epsilon') conformation "forbidden" or filtered. T0547 341 :SQEYAE 1yq2A 563 :TAEGME T0547 348 :KL 1yq2A 570 :FA Number of specific fragments extracted= 2 number of extra gaps= 1 total=41750 # 1dc1A.341.163 read from T0547.t2k.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 T0547 342 :QEYAENKL 1dc1A 165 :KKYTNWMD Number of specific fragments extracted= 1 number of extra gaps= 1 total=41751 # 1knwA.342.289 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q342 (1knwA)M290 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1knwA)G291 because S (epsilon) conformation "forbidden" or filtered. T0547 344 :YAENKLI 1knwA 292 :SRHFVLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=41752 # 1gx5A.342.375 read from T0547.t2k.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)Y344 (1gx5A)G378 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1gx5A)V381 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. T0547 342 :QE 1gx5A 376 :AS T0547 345 :AE 1gx5A 379 :KR T0547 348 :K 1gx5A 382 :Y T0547 350 :I 1gx5A 384 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=41756 # 1r7mA.342.191 read from T0547.t2k.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)E343 (1r7mA)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. T0547 342 :Q 1r7mA 192 :N T0547 345 :AENKLI 1r7mA 195 :KPIIYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=41758 # 1wdvA.342.50 read from T0547.t2k.many.frag # found chain 1wdvA in training set Warning: unaligning (T0547)Y344 (1wdvA)G53 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1wdvA)G54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1wdvA)V55 because E (beta_S) conformation "forbidden" or filtered. T0547 342 :QE 1wdvA 51 :NA T0547 347 :NKLI 1wdvA 56 :YAVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41760 # 2fimA.342.149 read from T0547.t2k.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fimA)R366 T0547 346 :ENKLI 2fimA 367 :RMTVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=41761 # 1bob.342.128 read from T0547.t2k.many.frag # found chain 1bob in template set Warning: unaligning (T0547)E343 (1bob)N130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1bob)V135 because E (beta_S) conformation "forbidden" or filtered. T0547 342 :Q 1bob 129 :L T0547 344 :YAEN 1bob 131 :GEEF T0547 349 :LI 1bob 136 :VY Number of specific fragments extracted= 3 number of extra gaps= 2 total=41764 # 1pa1A.342.86 read from T0547.t2k.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)K348 (1pa1A)Y581 because E (beta_S) conformation "forbidden" or filtered. T0547 342 :QEYAEN 1pa1A 575 :EEAQRS T0547 349 :LI 1pa1A 582 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=41766 # 1jr7A.342.168 read from T0547.t2k.many.frag # found chain 1jr7A in template set Warning: unaligning (T0547)Y344 (1jr7A)G185 because S (epsilon) conformation "forbidden" or filtered. T0547 342 :QE 1jr7A 183 :MQ T0547 345 :AENKLI 1jr7A 186 :GNSLLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=41768 # 2f9hA.342.21 read from T0547.t2k.many.frag # found chain 2f9hA in training set T0547 342 :QEYAENKLI 2f9hA 19 :DSEKMIILF Number of specific fragments extracted= 1 number of extra gaps= 0 total=41769 2arhA expands to /projects/compbio/data/pdb/2arh.pdb.gz 2arhA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2arhA.342.58 read from T0547.t2k.many.frag # adding 2arhA to template set # found chain 2arhA in template set Warning: unaligning (T0547)E343 (2arhA)P58 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (2arhA)W60 because E (beta_S) conformation "forbidden" or filtered. T0547 342 :Q 2arhA 57 :K T0547 344 :Y 2arhA 59 :Y T0547 346 :ENKLI 2arhA 61 :QPWVE Number of specific fragments extracted= 3 number of extra gaps= 2 total=41772 # 1w5rA.342.120 read from T0547.t2k.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)E343 (1w5rA)G119 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1w5rA)D121 because N (gamma') conformation "forbidden" or filtered. T0547 342 :Q 1w5rA 118 :P T0547 344 :Y 1w5rA 120 :A T0547 346 :ENKLI 1w5rA 122 :GRYLV Number of specific fragments extracted= 3 number of extra gaps= 2 total=41775 # 1t6sA.342.142 read from T0547.t2k.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)Q342 (1t6sA)S143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1t6sA)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1t6sA)R146 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1t6sA)Q149 because E (beta_S) conformation "forbidden" or filtered. T0547 343 :E 1t6sA 144 :P T0547 346 :EN 1t6sA 147 :PL T0547 349 :LI 1t6sA 150 :YG Number of specific fragments extracted= 3 number of extra gaps= 3 total=41778 # 1ddwA.342.18 read from T0547.t2k.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)Y344 (1ddwA)K21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1ddwA)W24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I350 (1ddwA)T27 because G (3-10) conformation "forbidden" or filtered. T0547 342 :QE 1ddwA 19 :NT T0547 345 :AE 1ddwA 22 :KN T0547 348 :KL 1ddwA 25 :VP Number of specific fragments extracted= 3 number of extra gaps= 3 total=41781 # 1c4qA.342.14 read from T0547.t2k.many.frag # found chain 1c4qA in training set T0547 342 :QEYAENKLI 1c4qA 115 :NDDDTFTVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=41782 # 1h6fA.342.154 read from T0547.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)Q342 (1h6fA)F253 because D (zeta) conformation "forbidden" or filtered. T0547 343 :EYAENKLI 1h6fA 254 :PETEFIAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=41783 # 1r8eA.342.36 read from T0547.t2k.many.frag # found chain 1r8eA in template set Warning: unaligning (T0547)E346 (1r8eA)S41 because T (delta_L) conformation "forbidden" or filtered. T0547 342 :QEYA 1r8eA 37 :DPDT T0547 347 :NKLI 1r8eA 42 :YRYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=41785 # 2bjnA.342.88 read from T0547.t2k.many.frag # found chain 2bjnA in training set Warning: unaligning (T0547)N347 (2bjnA)Y94 because E (beta_S) conformation "forbidden" or filtered. T0547 342 :QEYAE 2bjnA 89 :NHQGI T0547 348 :KLI 2bjnA 95 :VLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=41787 # 1yukB.342.56 read from T0547.t2k.many.frag # found chain 1yukB in template set Warning: unaligning (T0547)E343 (1yukB)Q400 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1yukB)F404 because Y (epsilon') conformation "forbidden" or filtered. T0547 342 :Q 1yukB 399 :I T0547 344 :YAE 1yukB 401 :EQS T0547 348 :KLI 1yukB 405 :VIR Number of specific fragments extracted= 3 number of extra gaps= 2 total=41790 # 1u7nA.342.133 read from T0547.t2k.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)E346 (1u7nA)G135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1u7nA)D137 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE in next template residue (1u7nA)D140 T0547 342 :QEYA 1u7nA 131 :EPDK T0547 347 :N 1u7nA 136 :F T0547 349 :L 1u7nA 138 :M Number of specific fragments extracted= 3 number of extra gaps= 3 total=41793 # 1omhA.342.130 read from T0547.t2k.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)E343 (1omhA)Q132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1omhA)G133 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1omhA)T135 because P (beta_P) conformation "forbidden" or filtered. T0547 342 :Q 1omhA 131 :I T0547 345 :A 1omhA 134 :K T0547 347 :NKLI 1omhA 136 :RIET Number of specific fragments extracted= 3 number of extra gaps= 2 total=41796 # 1f3uA.342.47 read from T0547.t2k.many.frag # found chain 1f3uA in training set Warning: unaligning (T0547)E343 (1f3uA)G50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1f3uA)V54 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1f3uA)S55 because Y (epsilon') conformation "forbidden" or filtered. T0547 342 :Q 1f3uA 49 :Q T0547 344 :YAE 1f3uA 51 :RTE T0547 349 :LI 1f3uA 56 :FT Number of specific fragments extracted= 3 number of extra gaps= 2 total=41799 # 1ir6A.342.287 read from T0547.t2k.many.frag # found chain 1ir6A in template set T0547 342 :QEYAENKLI 1ir6A 327 :PEAKAIVLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=41800 # 1y9lA.342.93 read from T0547.t2k.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)K348 (1y9lA)L127 because P (beta_P) conformation "forbidden" or filtered. T0547 342 :QEYAEN 1y9lA 121 :KINDTI T0547 349 :LI 1y9lA 128 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=41802 # 1h7sA.342.206 read from T0547.t2k.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)N347 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. T0547 342 :QEYAE 1h7sA 207 :GQGKR T0547 348 :KLI 1h7sA 213 :PVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41804 1o59A expands to /projects/compbio/data/pdb/1o59.pdb.gz 1o59A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1211, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1213, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1215, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1217, because occupancy 0.350 <= existing 0.650 in 1o59A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1410, because occupancy 0.500 <= existing 0.500 in 1o59A Skipped atom 1412, because occupancy 0.500 <= existing 0.500 in 1o59A Skipped atom 1414, because occupancy 0.500 <= existing 0.500 in 1o59A Skipped atom 1416, because occupancy 0.500 <= existing 0.500 in 1o59A Skipped atom 1418, because occupancy 0.500 <= existing 0.500 in 1o59A Skipped atom 1420, because occupancy 0.500 <= existing 0.500 in 1o59A Skipped atom 1617, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1619, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1621, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1623, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1625, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1627, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1629, because occupancy 0.350 <= existing 0.650 in 1o59A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1992, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1994, because occupancy 0.350 <= existing 0.650 in 1o59A # 1o59A.342.155 read from T0547.t2k.many.frag # adding 1o59A to template set # found chain 1o59A in template set Warning: unaligning (T0547)Y344 (1o59A)S146 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1o59A)Q147 because Y (epsilon') conformation "forbidden" or filtered. T0547 342 :QE 1o59A 144 :GP T0547 346 :ENKLI 1o59A 148 :RHLFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41806 # 2fkcA.342.182 read from T0547.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0547)E346 (2fkcA)R187 because Y (epsilon') conformation "forbidden" or filtered. T0547 342 :QEYA 2fkcA 183 :SNNA T0547 347 :NKLI 2fkcA 188 :WILR Number of specific fragments extracted= 2 number of extra gaps= 1 total=41808 # 2f06A.342.41 read from T0547.t2k.many.frag # found chain 2f06A in template set Warning: unaligning (T0547)E346 because of BadResidue code BAD_PEPTIDE in next template residue (2f06A)I44 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE at template residue (2f06A)I44 Warning: unaligning (T0547)L349 because of BadResidue code BAD_PEPTIDE in next template residue (2f06A)G47 Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE at template residue (2f06A)G47 T0547 342 :QEYA 2f06A 39 :NADF T0547 348 :K 2f06A 45 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=41810 1by2 expands to /projects/compbio/data/pdb/1by2.pdb.gz 1by2:Warning: there is no chain 1by2 will retry with 1by2A # 1by2.342.26 read from T0547.t2k.many.frag # adding 1by2 to template set # found chain 1by2 in template set Warning: unaligning (T0547)E343 (1by2)R24 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1by2)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1by2)G28 because Y (epsilon') conformation "forbidden" or filtered. T0547 342 :Q 1by2 23 :Y T0547 345 :AE 1by2 26 :QW T0547 348 :KLI 1by2 29 :TVC Number of specific fragments extracted= 3 number of extra gaps= 2 total=41813 # 1kg0C.342.83 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)Y344 (1kg0C)E171 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1kg0C)G172 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1kg0C)T175 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1kg0C)S176 because Y (epsilon') conformation "forbidden" or filtered. T0547 342 :QE 1kg0C 169 :VG T0547 346 :EN 1kg0C 173 :NW T0547 350 :I 1kg0C 177 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=41816 # 1yq2A.342.564 read from T0547.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)E346 (1yq2A)E568 because P (beta_P) conformation "forbidden" or filtered. T0547 342 :QEYA 1yq2A 564 :AEGM T0547 347 :NKLI 1yq2A 569 :FFAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=41818 # 1knwA.343.290 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 343 :EYAENKLIL 1knwA 291 :GSRHFVLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=41819 # 1gx5A.343.376 read from T0547.t2k.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)Y344 (1gx5A)G378 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1gx5A)T385 because Y (epsilon') conformation "forbidden" or filtered. T0547 343 :E 1gx5A 377 :S T0547 345 :AENK 1gx5A 379 :KRVY T0547 350 :I 1gx5A 384 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=41822 # 1pa1A.343.87 read from T0547.t2k.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)A345 (1pa1A)Q578 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1pa1A)R579 because E (beta_S) conformation "forbidden" or filtered. T0547 343 :EY 1pa1A 576 :EA T0547 347 :NKLIL 1pa1A 580 :SYILT Number of specific fragments extracted= 2 number of extra gaps= 1 total=41824 # 2fimA.343.150 read from T0547.t2k.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fimA)R366 T0547 346 :ENKLIL 2fimA 367 :RMTVII Number of specific fragments extracted= 1 number of extra gaps= 0 total=41825 # 1wdvA.343.51 read from T0547.t2k.many.frag # found chain 1wdvA in training set Warning: unaligning (T0547)A345 (1wdvA)G54 because P (beta_P) conformation "forbidden" or filtered. T0547 343 :EY 1wdvA 52 :AG T0547 346 :ENKLIL 1wdvA 55 :VYAVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=41827 # 1w5rA.343.121 read from T0547.t2k.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)L351 (1w5rA)D127 because D (zeta) conformation "forbidden" or filtered. T0547 343 :EYAENKLI 1w5rA 119 :GADGRYLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=41828 # 2f9hA.343.22 read from T0547.t2k.many.frag # found chain 2f9hA in training set Warning: unaligning (T0547)K348 (2f9hA)I25 because P (beta_P) conformation "forbidden" or filtered. T0547 343 :EYAEN 2f9hA 20 :SEKMI T0547 349 :LIL 2f9hA 26 :LFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=41830 # 1r7mA.343.192 read from T0547.t2k.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)E343 (1r7mA)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1r7mA)I197 because E (beta_S) conformation "forbidden" or filtered. T0547 345 :AE 1r7mA 195 :KP T0547 348 :KLIL 1r7mA 198 :IYID Number of specific fragments extracted= 2 number of extra gaps= 2 total=41832 # 1bob.343.129 read from T0547.t2k.many.frag # found chain 1bob in template set T0547 343 :EYAENKLIL 1bob 130 :NGEEFVVYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=41833 # 1r8eA.343.37 read from T0547.t2k.many.frag # found chain 1r8eA in template set Warning: unaligning (T0547)A345 (1r8eA)T40 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1r8eA)Y42 because P (beta_P) conformation "forbidden" or filtered. T0547 343 :EY 1r8eA 38 :PD T0547 346 :E 1r8eA 41 :S T0547 348 :KLIL 1r8eA 43 :RYYT Number of specific fragments extracted= 3 number of extra gaps= 2 total=41836 # 1h6fA.343.155 read from T0547.t2k.many.frag # found chain 1h6fA in training set T0547 343 :EYAENKLIL 1h6fA 254 :PETEFIAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=41837 # 1ir6A.343.288 read from T0547.t2k.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)N347 (1ir6A)I332 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1ir6A)D336 because D (zeta) conformation "forbidden" or filtered. T0547 343 :EYAE 1ir6A 328 :EAKA T0547 348 :KLI 1ir6A 333 :VLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=41839 # 1jr7A.343.169 read from T0547.t2k.many.frag # found chain 1jr7A in template set Warning: unaligning (T0547)Y344 (1jr7A)G185 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1jr7A)G186 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1jr7A)S188 because P (beta_P) conformation "forbidden" or filtered. T0547 343 :E 1jr7A 184 :Q T0547 346 :E 1jr7A 187 :N T0547 348 :KLIL 1jr7A 189 :LLLH Number of specific fragments extracted= 3 number of extra gaps= 2 total=41842 # 2arhA.343.59 read from T0547.t2k.many.frag # found chain 2arhA in template set Warning: unaligning (T0547)E343 (2arhA)P58 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (2arhA)Q61 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :YA 2arhA 59 :YW T0547 347 :NKLIL 2arhA 62 :PWVEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=41844 # 1yukB.343.57 read from T0547.t2k.many.frag # found chain 1yukB in template set Warning: unaligning (T0547)E343 (1yukB)Q400 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1yukB)Q402 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1yukB)F404 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :Y 1yukB 401 :E T0547 346 :E 1yukB 403 :S T0547 348 :KLIL 1yukB 405 :VIRA Number of specific fragments extracted= 3 number of extra gaps= 3 total=41847 # 1by2.343.27 read from T0547.t2k.many.frag # found chain 1by2 in template set Warning: unaligning (T0547)Y344 (1by2)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1by2)G28 because Y (epsilon') conformation "forbidden" or filtered. T0547 343 :E 1by2 24 :R T0547 345 :AE 1by2 26 :QW T0547 348 :KLIL 1by2 29 :TVCD Number of specific fragments extracted= 3 number of extra gaps= 2 total=41850 # 1yj7A.343.33 read from T0547.t2k.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)N347 (1yj7A)M57 because E (beta_S) conformation "forbidden" or filtered. T0547 343 :EYAE 1yj7A 53 :KSGN T0547 348 :KLIL 1yj7A 58 :TLSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=41852 # 1ddwA.343.19 read from T0547.t2k.many.frag # found chain 1ddwA in training set T0547 343 :EYAENKLIL 1ddwA 20 :TKKNWVPTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=41853 # 1zhvA.343.98 read from T0547.t2k.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)A345 (1zhvA)G102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1zhvA)H104 because E (beta_S) conformation "forbidden" or filtered. T0547 343 :EY 1zhvA 100 :FD T0547 346 :E 1zhvA 103 :D T0547 348 :KLIL 1zhvA 105 :LLVR Number of specific fragments extracted= 3 number of extra gaps= 2 total=41856 # 2bjnA.343.89 read from T0547.t2k.many.frag # found chain 2bjnA in training set T0547 343 :EYAENKLIL 2bjnA 90 :HQGIYVLQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=41857 # 1kg0C.343.84 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)Y344 (1kg0C)E171 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1kg0C)G172 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1kg0C)N173 because T (delta_L) conformation "forbidden" or filtered. T0547 343 :E 1kg0C 170 :G T0547 347 :NKLIL 1kg0C 174 :WTSLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=41859 # 1h7sA.343.207 read from T0547.t2k.many.frag # found chain 1h7sA in template set T0547 343 :EYAENKLIL 1h7sA 208 :QGKRQPVVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=41860 # 2asbA.343.68 read from T0547.t2k.many.frag # found chain 2asbA in training set Warning: unaligning (T0547)K348 (2asbA)L178 because P (beta_P) conformation "forbidden" or filtered. T0547 343 :EYAEN 2asbA 173 :GAREP T0547 349 :LIL 2asbA 179 :ITL Number of specific fragments extracted= 2 number of extra gaps= 1 total=41862 # 1u7nA.343.134 read from T0547.t2k.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)N347 (1u7nA)F136 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I350 because of BadResidue code BAD_PEPTIDE in next template residue (1u7nA)D140 Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE at template residue (1u7nA)D140 T0547 343 :EYAE 1u7nA 132 :PDKG T0547 348 :KL 1u7nA 137 :DM Number of specific fragments extracted= 2 number of extra gaps= 2 total=41864 # 1xy7A.343.24 read from T0547.t2k.many.frag # found chain 1xy7A in training set T0547 343 :EYAENKLIL 1xy7A 25 :EFKQMLLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=41865 # 1p57A.343.24 read from T0547.t2k.many.frag # found chain 1p57A in training set T0547 343 :EYAENKLIL 1p57A 25 :EGTWRLLCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=41866 # 1s99A.343.147 read from T0547.t2k.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)E343 (1s99A)Q148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1s99A)Y152 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1s99A)A153 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :YAE 1s99A 149 :GVH T0547 349 :LIL 1s99A 154 :SEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=41868 # 1ru4A.343.11 read from T0547.t2k.many.frag # found chain 1ru4A in training set Warning: unaligning (T0547)K348 (1ru4A)Y42 because E (beta_S) conformation "forbidden" or filtered. T0547 343 :EYAEN 1ru4A 37 :STKRI T0547 349 :LIL 1ru4A 43 :YVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=41870 # 1mk0A.343.11 read from T0547.t2k.many.frag # found chain 1mk0A in training set Warning: unaligning (T0547)A345 (1mk0A)N14 because T (delta_L) conformation "forbidden" or filtered. T0547 343 :EY 1mk0A 12 :LN T0547 346 :ENKLIL 1mk0A 15 :KVYVGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=41872 # 1r9jA.343.544 read from T0547.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)Y344 (1r9jA)D544 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1r9jA)A551 because Y (epsilon') conformation "forbidden" or filtered. T0547 343 :E 1r9jA 543 :P T0547 345 :AENKLI 1r9jA 545 :LQLVIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=41874 # 1knwA.344.291 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 344 :YAENKLILK 1knwA 292 :SRHFVLVDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=41875 # 1gx5A.344.377 read from T0547.t2k.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)Y344 (1gx5A)G378 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :AENKLIL 1gx5A 379 :KRVYYLT Number of specific fragments extracted= 1 number of extra gaps= 2 total=41876 # 2fimA.344.151 read from T0547.t2k.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fimA)R366 Warning: unaligning (T0547)N347 (2fimA)M368 because E (beta_S) conformation "forbidden" or filtered. T0547 346 :E 2fimA 367 :R T0547 348 :KLILK 2fimA 369 :TVIIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=41878 # 1pa1A.344.88 read from T0547.t2k.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)A345 (1pa1A)Q578 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1pa1A)S580 because E (beta_S) conformation "forbidden" or filtered. T0547 344 :Y 1pa1A 577 :A T0547 346 :E 1pa1A 579 :R T0547 348 :KLILK 1pa1A 581 :YILTQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=41881 # 2f9hA.344.23 read from T0547.t2k.many.frag # found chain 2f9hA in training set T0547 344 :YAENKLILK 2f9hA 21 :EKMIILFGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=41882 # 1h6fA.344.156 read from T0547.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)N347 (1h6fA)F258 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :YAE 1h6fA 255 :ETE T0547 348 :KLILK 1h6fA 259 :IAVTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=41884 # 1r8eA.344.38 read from T0547.t2k.many.frag # found chain 1r8eA in template set T0547 344 :YAENKLILK 1r8eA 39 :DTSYRYYTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=41885 # 1xy7A.344.25 read from T0547.t2k.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)A345 (1xy7A)K27 because E (beta_S) conformation "forbidden" or filtered. T0547 344 :Y 1xy7A 26 :F T0547 346 :ENKLILK 1xy7A 28 :QMLLVEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=41887 # 1ir6A.344.289 read from T0547.t2k.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)N347 (1ir6A)I332 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :YAE 1ir6A 329 :AKA T0547 348 :KLILK 1ir6A 333 :VLLDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=41889 # 1jr7A.344.170 read from T0547.t2k.many.frag # found chain 1jr7A in template set Warning: unaligning (T0547)Y344 (1jr7A)G185 because S (epsilon) conformation "forbidden" or filtered. T0547 345 :AENKLILK 1jr7A 186 :GNSLLLHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=41890 # 1w5rA.344.122 read from T0547.t2k.many.frag # found chain 1w5rA in training set T0547 344 :YAENKLILK 1w5rA 120 :ADGRYLVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=41891 # 1yukB.344.58 read from T0547.t2k.many.frag # found chain 1yukB in template set T0547 344 :YAENKLILK 1yukB 401 :EQSFVIRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=41892 # 1wdvA.344.52 read from T0547.t2k.many.frag # found chain 1wdvA in training set Warning: unaligning (T0547)Y344 (1wdvA)G53 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1wdvA)P61 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :AENKLIL 1wdvA 54 :GVYAVVI Number of specific fragments extracted= 1 number of extra gaps= 2 total=41893 # 1zhvA.344.99 read from T0547.t2k.many.frag # found chain 1zhvA in training set T0547 344 :YAENKLILK 1zhvA 101 :DGDHLLVRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=41894 # 1by2.344.28 read from T0547.t2k.many.frag # found chain 1by2 in template set Warning: unaligning (T0547)Y344 (1by2)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1by2)G28 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :AE 1by2 26 :QW T0547 348 :KLILK 1by2 29 :TVCDN Number of specific fragments extracted= 2 number of extra gaps= 2 total=41896 # 1p57A.344.68 read from T0547.t2k.many.frag # found chain 1p57A in training set Warning: unaligning (T0547)A345 (1p57A)S70 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1p57A)G71 because S (epsilon) conformation "forbidden" or filtered. T0547 344 :Y 1p57A 69 :T T0547 347 :NKLILK 1p57A 72 :FFCVDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=41898 1wpbA expands to /projects/compbio/data/pdb/1wpb.pdb.gz 1wpbA:Skipped atom 274, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 276, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 278, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 280, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 282, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 284, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 286, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 1223, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 1225, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 1227, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 1229, because occupancy 0.500 <= existing 0.500 in 1wpbA # 1wpbA.344.96 read from T0547.t2k.many.frag # adding 1wpbA to template set # found chain 1wpbA in template set T0547 344 :YAENKLILK 1wpbA 95 :RVTFLGFDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=41899 # 1r7mA.344.193 read from T0547.t2k.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)Y344 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1r7mA)K195 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1r7mA)I197 because E (beta_S) conformation "forbidden" or filtered. T0547 346 :E 1r7mA 196 :P T0547 348 :KLILK 1r7mA 198 :IYIDS Number of specific fragments extracted= 2 number of extra gaps= 2 total=41901 # 1p57A.344.25 read from T0547.t2k.many.frag # found chain 1p57A in training set Warning: unaligning (T0547)K348 (1p57A)L30 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :YAEN 1p57A 26 :GTWR T0547 349 :LILK 1p57A 31 :LCSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=41903 # 1bob.344.130 read from T0547.t2k.many.frag # found chain 1bob in template set Warning: unaligning (T0547)A345 (1bob)E132 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :Y 1bob 131 :G T0547 346 :ENKLILK 1bob 133 :EFVVYKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=41905 # 1kg0C.344.85 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)Y344 (1kg0C)E171 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1kg0C)N173 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1kg0C)T175 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1kg0C)S176 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :A 1kg0C 172 :G T0547 347 :N 1kg0C 174 :W T0547 350 :ILK 1kg0C 177 :LDG Number of specific fragments extracted= 3 number of extra gaps= 3 total=41908 # 1mk0A.344.12 read from T0547.t2k.many.frag # found chain 1mk0A in training set Warning: unaligning (T0547)A345 (1mk0A)N14 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1mk0A)V16 because E (beta_S) conformation "forbidden" or filtered. T0547 344 :Y 1mk0A 13 :N T0547 346 :E 1mk0A 15 :K T0547 348 :KLILK 1mk0A 17 :YVGSA Number of specific fragments extracted= 3 number of extra gaps= 2 total=41911 # 1g8mA.344.225 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)K352 (1g8mA)G234 because S (epsilon) conformation "forbidden" or filtered. T0547 344 :YAENKLIL 1g8mA 226 :KLPLTVVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=41912 # 1rz2A.344.90 read from T0547.t2k.many.frag # found chain 1rz2A in training set Warning: unaligning (T0547)E346 (1rz2A)N93 because D (zeta) conformation "forbidden" or filtered. T0547 344 :YA 1rz2A 91 :QI T0547 347 :NKLILK 1rz2A 94 :YPIVQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=41914 # 1s99A.344.148 read from T0547.t2k.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)A345 (1s99A)V150 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1s99A)Y152 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1s99A)A153 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :Y 1s99A 149 :G T0547 346 :E 1s99A 151 :H T0547 349 :LILK 1s99A 154 :SELD Number of specific fragments extracted= 3 number of extra gaps= 2 total=41917 # 1h7sA.344.208 read from T0547.t2k.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)K348 (1h7sA)P213 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :YAEN 1h7sA 209 :GKRQ T0547 349 :LILK 1h7sA 214 :VVCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=41919 # 1d5tA.344.221 read from T0547.t2k.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)Y344 because of BadResidue code BAD_PEPTIDE in next template residue (1d5tA)K221 Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE at template residue (1d5tA)K221 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE in next template residue (1d5tA)Y224 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE at template residue (1d5tA)Y224 T0547 346 :E 1d5tA 222 :S T0547 349 :LILK 1d5tA 225 :LYPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=41921 # 2arhA.344.60 read from T0547.t2k.many.frag # found chain 2arhA in template set T0547 344 :YAENKLILK 2arhA 59 :YWQPWVEVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=41922 # 1yj7A.344.34 read from T0547.t2k.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)A345 (1yj7A)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 344 :Y 1yj7A 54 :S T0547 346 :ENKLILK 1yj7A 56 :NMTLSVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=41924 # 1ru4A.344.12 read from T0547.t2k.many.frag # found chain 1ru4A in training set T0547 344 :YAENKLILK 1ru4A 38 :TKRIYYVAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=41925 # 1knwA.345.292 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K353 (1knwA)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :AENKLILK 1knwA 293 :RHFVLVDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=41926 # 1gx5A.345.378 read from T0547.t2k.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)A345 (1gx5A)K379 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. T0547 346 :ENK 1gx5A 380 :RVY T0547 350 :ILKK 1gx5A 384 :LTRD Number of specific fragments extracted= 2 number of extra gaps= 2 total=41928 # 2fimA.345.152 read from T0547.t2k.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fimA)R366 Warning: unaligning (T0547)K352 (2fimA)P373 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :ENKLIL 2fimA 367 :RMTVII T0547 353 :K 2fimA 374 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=41930 # 1pa1A.345.89 read from T0547.t2k.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)A345 (1pa1A)Q578 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1pa1A)R579 because E (beta_S) conformation "forbidden" or filtered. T0547 347 :NKLILKK 1pa1A 580 :SYILTQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=41931 # 2f9hA.345.24 read from T0547.t2k.many.frag # found chain 2f9hA in training set T0547 345 :AENKLILKK 2f9hA 22 :KMIILFGET Number of specific fragments extracted= 1 number of extra gaps= 0 total=41932 # 1xy7A.345.26 read from T0547.t2k.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)K353 (1xy7A)Q35 because T (delta_L) conformation "forbidden" or filtered. T0547 345 :AENKLILK 1xy7A 27 :KQMLLVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=41933 # 1wpbA.345.97 read from T0547.t2k.many.frag # found chain 1wpbA in template set T0547 345 :AENKLILKK 1wpbA 96 :VTFLGFDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=41934 # 1p57A.345.69 read from T0547.t2k.many.frag # found chain 1p57A in training set Warning: unaligning (T0547)E346 (1p57A)G71 because S (epsilon) conformation "forbidden" or filtered. T0547 345 :A 1p57A 70 :S T0547 347 :NKLILKK 1p57A 72 :FFCVDEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=41936 # 1zhvA.345.100 read from T0547.t2k.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)A345 (1zhvA)G102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1zhvA)D103 because Y (epsilon') conformation "forbidden" or filtered. T0547 347 :NKLILKK 1zhvA 104 :HLLVRSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=41937 # 1h6fA.345.157 read from T0547.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)N347 (1h6fA)F258 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :AE 1h6fA 256 :TE T0547 348 :KLILKK 1h6fA 259 :IAVTAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=41939 # 1by2.345.29 read from T0547.t2k.many.frag # found chain 1by2 in template set Warning: unaligning (T0547)N347 (1by2)G28 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1by2)N33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1by2)L34 because T (delta_L) conformation "forbidden" or filtered. T0547 345 :AE 1by2 26 :QW T0547 348 :KLIL 1by2 29 :TVCD Number of specific fragments extracted= 2 number of extra gaps= 2 total=41941 # 1ir6A.345.290 read from T0547.t2k.many.frag # found chain 1ir6A in template set T0547 345 :AENKLILKK 1ir6A 330 :KAIVLLDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=41942 # 1r8eA.345.39 read from T0547.t2k.many.frag # found chain 1r8eA in template set Warning: unaligning (T0547)N347 (1r8eA)Y42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1r8eA)R43 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :AE 1r8eA 40 :TS T0547 349 :LILKK 1r8eA 44 :YYTDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=41944 # 1yukB.345.59 read from T0547.t2k.many.frag # found chain 1yukB in template set Warning: unaligning (T0547)N347 (1yukB)F404 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1yukB)L409 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :AE 1yukB 402 :QS T0547 348 :KLIL 1yukB 405 :VIRA T0547 353 :K 1yukB 410 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=41947 # 1rz2A.345.91 read from T0547.t2k.many.frag # found chain 1rz2A in training set Warning: unaligning (T0547)N347 (1rz2A)Y94 because E (beta_S) conformation "forbidden" or filtered. T0547 345 :AE 1rz2A 92 :IN T0547 348 :KLILKK 1rz2A 95 :PIVQAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=41949 # 1s2oA.345.115 read from T0547.t2k.many.frag # found chain 1s2oA in training set Warning: unaligning (T0547)K348 (1s2oA)Y119 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :AEN 1s2oA 116 :KIS T0547 349 :LILKK 1s2oA 120 :HLDPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=41951 # 1jr7A.345.171 read from T0547.t2k.many.frag # found chain 1jr7A in template set Warning: unaligning (T0547)N347 (1jr7A)S188 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1jr7A)L189 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :AE 1jr7A 186 :GN T0547 349 :LILKK 1jr7A 190 :LLHLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=41953 # 1wdvA.345.53 read from T0547.t2k.many.frag # found chain 1wdvA in training set T0547 345 :AENKLILKK 1wdvA 54 :GVYAVVIPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=41954 # 1p57A.345.26 read from T0547.t2k.many.frag # found chain 1p57A in training set Warning: unaligning (T0547)K352 (1p57A)S34 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :AENKLIL 1p57A 27 :TWRLLCS T0547 353 :K 1p57A 35 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=41956 # 1ta0A.345.49 read from T0547.t2k.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)N347 (1ta0A)V127 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1ta0A)Y128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1ta0A)P133 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :AE 1ta0A 125 :HQ T0547 349 :LILK 1ta0A 129 :VLKR Number of specific fragments extracted= 2 number of extra gaps= 2 total=41958 1utcA expands to /projects/compbio/data/pdb/1utc.pdb.gz 1utcA:# 1utcA.345.47 read from T0547.t2k.many.frag # adding 1utcA to template set # found chain 1utcA in template set T0547 345 :AENKLILKK 1utcA 48 :AQVVIIDMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=41959 1lm8V expands to /projects/compbio/data/pdb/1lm8.pdb.gz 1lm8V:# 1lm8V.345.61 read from T0547.t2k.many.frag # adding 1lm8V to template set # found chain 1lm8V in template set T0547 345 :AENKLILKK 1lm8V 115 :HLWLFRDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=41960 # 1w5rA.345.123 read from T0547.t2k.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)E346 (1w5rA)G122 because S (epsilon) conformation "forbidden" or filtered. T0547 345 :A 1w5rA 121 :D T0547 347 :NKLILKK 1w5rA 123 :RYLVDVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=41962 # 1g8mA.345.226 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)N347 (1g8mA)L229 because E (beta_S) conformation "forbidden" or filtered. T0547 345 :AE 1g8mA 227 :LP T0547 348 :KLILKK 1g8mA 230 :TVVNGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=41964 # 1r7mA.345.194 read from T0547.t2k.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)E346 (1r7mA)P196 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :A 1r7mA 195 :K T0547 347 :NKLILKK 1r7mA 197 :IIYIDSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=41966 # 1kg0C.345.86 read from T0547.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)A345 (1kg0C)G172 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1kg0C)S176 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1kg0C)G179 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1kg0C)G180 because S (epsilon) conformation "forbidden" or filtered. T0547 346 :ENK 1kg0C 173 :NWT T0547 350 :IL 1kg0C 177 :LD Number of specific fragments extracted= 2 number of extra gaps= 3 total=41968 # 1d5tA.345.222 read from T0547.t2k.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE at template residue (1d5tA)K221 Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE in next template residue (1d5tA)Y224 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE at template residue (1d5tA)Y224 T0547 346 :E 1d5tA 222 :S T0547 349 :LILKK 1d5tA 225 :LYPLY Number of specific fragments extracted= 2 number of extra gaps= 2 total=41970 # 1mk0A.345.13 read from T0547.t2k.many.frag # found chain 1mk0A in training set Warning: unaligning (T0547)A345 (1mk0A)N14 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :ENKLILKK 1mk0A 15 :KVYVGSAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=41971 # 2bmoA.345.324 read from T0547.t2k.many.frag # found chain 2bmoA in training set T0547 345 :AENKLILKK 2bmoA 325 :WTYAFVEKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=41972 1vs0A expands to /projects/compbio/data/pdb/1vs0.pdb.gz 1vs0A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: P for alphabet: pdb_atoms Bad short name: O1P for alphabet: pdb_atoms Bad short name: O2P for alphabet: pdb_atoms Bad short name: O5' for alphabet: pdb_atoms Bad short name: C5' for alphabet: pdb_atoms Bad short name: C4' for alphabet: pdb_atoms Bad short name: O4' for alphabet: pdb_atoms Bad short name: C3' for alphabet: pdb_atoms Bad short name: O3' for alphabet: pdb_atoms Bad short name: C2' for alphabet: pdb_atoms Bad short name: O2' for alphabet: pdb_atoms Bad short name: C1' for alphabet: pdb_atoms Bad short name: N9 for alphabet: pdb_atoms Bad short name: C8 for alphabet: pdb_atoms Bad short name: N7 for alphabet: pdb_atoms Bad short name: C5 for alphabet: pdb_atoms Bad short name: C4 for alphabet: pdb_atoms Bad short name: N3 for alphabet: pdb_atoms Bad short name: C2 for alphabet: pdb_atoms Bad short name: N1 for alphabet: pdb_atoms Bad short name: C6 for alphabet: pdb_atoms Bad short name: N6 for alphabet: pdb_atoms Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1189, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1191, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1193, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1195, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1197, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1199, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1201, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1203, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1205, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1228, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1230, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1232, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1234, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1236, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1238, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1336, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1338, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1340, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1342, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1344, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1346, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1348, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1350, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1352, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1354, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1356, because occupancy 0.500 <= existing 0.500 in 1vs0A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2276, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2278, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2280, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2282, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2284, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2286, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2288, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2290, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2292, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2294, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2296, because occupancy 0.500 <= existing 0.500 in 1vs0A # 1vs0A.345.224 read from T0547.t2k.many.frag # adding 1vs0A to template set # found chain 1vs0A in template set Warning: unaligning (T0547)N347 (1vs0A)A676 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1vs0A)G677 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vs0A)T681 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vs0A)T681 Warning: unaligning (T0547)K353 (1vs0A)G682 because T (delta_L) conformation "forbidden" or filtered. T0547 345 :AE 1vs0A 674 :QF T0547 349 :LI 1vs0A 678 :RV Number of specific fragments extracted= 2 number of extra gaps= 2 total=41974 # 1knwA.346.293 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E346 (1knwA)H294 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1knwA)F295 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1knwA)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLILK 1knwA 296 :VLVDA T0547 354 :Q 1knwA 302 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=41976 # 1gx5A.346.379 read from T0547.t2k.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)K352 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1gx5A)D387 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :ENKLIL 1gx5A 380 :RVYYLT T0547 354 :Q 1gx5A 388 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=41978 # 1wpbA.346.98 read from T0547.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0547)N347 (1wpbA)F98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1wpbA)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 346 :E 1wpbA 97 :T T0547 348 :K 1wpbA 99 :L T0547 350 :ILKKQ 1wpbA 101 :FDAAT Number of specific fragments extracted= 3 number of extra gaps= 2 total=41981 # 1xy7A.346.27 read from T0547.t2k.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)K353 (1xy7A)Q35 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :ENKLILK 1xy7A 28 :QMLLVEA T0547 354 :Q 1xy7A 36 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=41983 # 1s2oA.346.116 read from T0547.t2k.many.frag # found chain 1s2oA in training set T0547 346 :ENKLILKKQ 1s2oA 117 :ISYHLDPQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=41984 # 2fimA.346.153 read from T0547.t2k.many.frag # found chain 2fimA in template set T0547 346 :ENKLILKKQ 2fimA 367 :RMTVIIPGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=41985 # 2f9hA.346.25 read from T0547.t2k.many.frag # found chain 2f9hA in training set Warning: unaligning (T0547)K348 (2f9hA)I25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (2f9hA)A31 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :EN 2f9hA 23 :MI T0547 349 :LILKK 2f9hA 26 :LFGET Number of specific fragments extracted= 2 number of extra gaps= 2 total=41987 # 1p57A.346.70 read from T0547.t2k.many.frag # found chain 1p57A in training set T0547 346 :ENKLILKKQ 1p57A 71 :GFFCVDEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=41988 # 1pa1A.346.90 read from T0547.t2k.many.frag # found chain 1pa1A in template set T0547 346 :ENKLILKKQ 1pa1A 579 :RSYILTQGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=41989 # 1by2.346.30 read from T0547.t2k.many.frag # found chain 1by2 in template set Warning: unaligning (T0547)K352 (1by2)N33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1by2)L34 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :ENKLIL 1by2 27 :WGTVCD T0547 354 :Q 1by2 35 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=41991 # 1h6fA.346.158 read from T0547.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)N347 (1h6fA)F258 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I350 (1h6fA)V261 because Y (epsilon') conformation "forbidden" or filtered. T0547 346 :E 1h6fA 257 :E T0547 348 :KL 1h6fA 259 :IA T0547 351 :LKKQ 1h6fA 262 :TAYQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=41994 # 2bmoA.346.325 read from T0547.t2k.many.frag # found chain 2bmoA in training set T0547 346 :ENKLILKKQ 2bmoA 326 :TYAFVEKDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=41995 # 1r8eA.346.40 read from T0547.t2k.many.frag # found chain 1r8eA in template set Warning: unaligning (T0547)E346 (1r8eA)S41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1r8eA)Y42 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLILKKQ 1r8eA 43 :RYYTDSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=41996 # 1ir6A.346.291 read from T0547.t2k.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)K348 (1ir6A)V333 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1ir6A)E338 because D (zeta) conformation "forbidden" or filtered. T0547 346 :EN 1ir6A 331 :AI T0547 349 :LILK 1ir6A 334 :LLDP T0547 354 :Q 1ir6A 339 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=41999 # 1zhvA.346.101 read from T0547.t2k.many.frag # found chain 1zhvA in training set T0547 346 :ENKLILKKQ 1zhvA 103 :DHLLVRSND Number of specific fragments extracted= 1 number of extra gaps= 0 total=42000 1rloA expands to /projects/compbio/data/pdb/1rlo.pdb.gz 1rloA:Bad short name: BE for alphabet: pdb_atoms Bad short name: F1 for alphabet: pdb_atoms Bad short name: F2 for alphabet: pdb_atoms Bad short name: F3 for alphabet: pdb_atoms # 1rloA.346.109 read from T0547.t2k.many.frag # adding 1rloA to template set # found chain 1rloA in template set Warning: unaligning (T0547)N347 (1rloA)S111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1rloA)A118 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :E 1rloA 110 :Q T0547 348 :KLILKK 1rloA 112 :AYVSEN Number of specific fragments extracted= 2 number of extra gaps= 2 total=42002 # 1rz2A.346.92 read from T0547.t2k.many.frag # found chain 1rz2A in training set Warning: unaligning (T0547)Q354 (1rz2A)D101 because Y (epsilon') conformation "forbidden" or filtered. T0547 346 :ENKLILKK 1rz2A 93 :NYPIVQAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=42003 # 1lm8V.346.62 read from T0547.t2k.many.frag # found chain 1lm8V in template set T0547 346 :ENKLILKKQ 1lm8V 116 :LWLFRDAGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=42004 # 1jr7A.346.172 read from T0547.t2k.many.frag # found chain 1jr7A in template set T0547 346 :ENKLILKKQ 1jr7A 187 :NSLLLHLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42005 # 1m15A.346.164 read from T0547.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)K353 (1m15A)G172 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :ENKLILK 1m15A 165 :GTYYPLT T0547 354 :Q 1m15A 173 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=42007 # 1ta0A.346.50 read from T0547.t2k.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)Q354 (1ta0A)H134 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :ENKLILKK 1ta0A 126 :QVYVLKRP Number of specific fragments extracted= 1 number of extra gaps= 1 total=42008 # 1utcA.346.48 read from T0547.t2k.many.frag # found chain 1utcA in template set T0547 346 :ENKLILKKQ 1utcA 49 :QVVIIDMND Number of specific fragments extracted= 1 number of extra gaps= 0 total=42009 # 1w5rA.346.124 read from T0547.t2k.many.frag # found chain 1w5rA in training set T0547 346 :ENKLILKKQ 1w5rA 122 :GRYLVDVGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=42010 # 1wdvA.346.54 read from T0547.t2k.many.frag # found chain 1wdvA in training set T0547 346 :ENKLILKKQ 1wdvA 55 :VYAVVIPGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42011 # 1rtqA.346.188 read from T0547.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)K353 (1rtqA)Y196 because L (left) conformation "forbidden" or filtered. T0547 346 :ENKLILK 1rtqA 189 :DVVFITD T0547 354 :Q 1rtqA 197 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=42013 # 1yukB.346.60 read from T0547.t2k.many.frag # found chain 1yukB in template set Warning: unaligning (T0547)N347 (1yukB)F404 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1yukB)L409 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1yukB)G410 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :E 1yukB 403 :S T0547 348 :KLIL 1yukB 405 :VIRA T0547 354 :Q 1yukB 411 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=42016 # 1zxuA.346.100 read from T0547.t2k.many.frag # found chain 1zxuA in training set Warning: unaligning (T0547)K352 (1zxuA)G107 because S (epsilon) conformation "forbidden" or filtered. T0547 346 :ENKLIL 1zxuA 101 :RWQVFR T0547 353 :KQ 1zxuA 108 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=42018 # 1gxmA.346.66 read from T0547.t2k.many.frag # found chain 1gxmA in training set Warning: unaligning (T0547)N347 (1gxmA)S385 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1gxmA)G391 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :E 1gxmA 384 :E T0547 348 :KLILK 1gxmA 386 :GTIDN T0547 354 :Q 1gxmA 392 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=42021 # 1bob.346.132 read from T0547.t2k.many.frag # found chain 1bob in template set Warning: unaligning (T0547)E346 (1bob)E133 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1bob)S139 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1bob)S140 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :NKLIL 1bob 134 :FVVYK T0547 354 :Q 1bob 141 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=42023 # 1r29A.346.67 read from T0547.t2k.many.frag # found chain 1r29A in training set T0547 346 :ENKLILKKQ 1r29A 70 :SVINLDPEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42024 # 1gx5A.347.380 read from T0547.t2k.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)K352 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. T0547 347 :NKLIL 1gx5A 381 :VYYLT T0547 353 :KQN 1gx5A 387 :DPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=42026 # 1knwA.347.294 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K353 (1knwA)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 347 :NKLILK 1knwA 295 :FVLVDA T0547 354 :QN 1knwA 302 :FN Number of specific fragments extracted= 2 number of extra gaps= 1 total=42028 # 1wpbA.347.99 read from T0547.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0547)L349 (1wpbA)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 347 :NK 1wpbA 98 :FL T0547 350 :ILKKQN 1wpbA 101 :FDAATE Number of specific fragments extracted= 2 number of extra gaps= 1 total=42030 # 1s2oA.347.117 read from T0547.t2k.many.frag # found chain 1s2oA in training set T0547 347 :NKLILKKQN 1s2oA 118 :SYHLDPQAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=42031 # 1xy7A.347.28 read from T0547.t2k.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)K353 (1xy7A)Q35 because T (delta_L) conformation "forbidden" or filtered. T0547 347 :NKLILK 1xy7A 29 :MLLVEA T0547 354 :QN 1xy7A 36 :KV Number of specific fragments extracted= 2 number of extra gaps= 1 total=42033 # 2bmoA.347.326 read from T0547.t2k.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)N355 (2bmoA)P335 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :NKLILKKQ 2bmoA 327 :YAFVEKDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=42034 # 1rloA.347.110 read from T0547.t2k.many.frag # found chain 1rloA in template set T0547 347 :NKLILKKQN 1rloA 111 :SAYVSENAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42035 # 2fimA.347.154 read from T0547.t2k.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)K353 (2fimA)G374 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :NKLILK 2fimA 368 :MTVIIP T0547 354 :QN 2fimA 375 :MS Number of specific fragments extracted= 2 number of extra gaps= 1 total=42037 # 2f9hA.347.26 read from T0547.t2k.many.frag # found chain 2f9hA in training set Warning: unaligning (T0547)Q354 (2f9hA)A31 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :NKLILKK 2f9hA 24 :IILFGET T0547 355 :N 2f9hA 32 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=42039 # 1p57A.347.71 read from T0547.t2k.many.frag # found chain 1p57A in training set Warning: unaligning (T0547)N347 (1p57A)F72 because E (beta_S) conformation "forbidden" or filtered. T0547 348 :KLILKKQN 1p57A 73 :FCVDEGRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=42040 # 1pa1A.347.91 read from T0547.t2k.many.frag # found chain 1pa1A in template set T0547 347 :NKLILKKQN 1pa1A 580 :SYILTQGPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42041 # 1m15A.347.165 read from T0547.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)N347 (1m15A)T166 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1m15A)Y167 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1m15A)S174 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LILKKQ 1m15A 168 :YPLTGM Number of specific fragments extracted= 1 number of extra gaps= 2 total=42042 # 1by2.347.31 read from T0547.t2k.many.frag # found chain 1by2 in template set Warning: unaligning (T0547)K348 (1by2)T29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1by2)D36 because Y (epsilon') conformation "forbidden" or filtered. T0547 347 :N 1by2 28 :G T0547 349 :LILKKQ 1by2 30 :VCDNLW Number of specific fragments extracted= 2 number of extra gaps= 2 total=42044 # 1lm8V.347.63 read from T0547.t2k.many.frag # found chain 1lm8V in template set T0547 347 :NKLILKKQN 1lm8V 117 :WLFRDAGTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=42045 # 1h6fA.347.159 read from T0547.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)N347 (1h6fA)F258 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1h6fA)N266 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLILKKQ 1h6fA 259 :IAVTAYQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=42046 # 1ir6A.347.292 read from T0547.t2k.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)Q354 (1ir6A)G339 because E (beta_S) conformation "forbidden" or filtered. T0547 347 :NKLILKK 1ir6A 332 :IVLLDPE T0547 355 :N 1ir6A 340 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=42048 # 1rz2A.347.93 read from T0547.t2k.many.frag # found chain 1rz2A in training set Warning: unaligning (T0547)K352 (1rz2A)A99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1rz2A)D101 because Y (epsilon') conformation "forbidden" or filtered. T0547 347 :NKLIL 1rz2A 94 :YPIVQ T0547 353 :K 1rz2A 100 :K T0547 355 :N 1rz2A 102 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=42051 # 1rtqA.347.189 read from T0547.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)K348 (1rtqA)V191 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1rtqA)T197 because E (beta_S) conformation "forbidden" or filtered. T0547 347 :N 1rtqA 190 :V T0547 349 :LILKK 1rtqA 192 :FITDY T0547 355 :N 1rtqA 198 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=42054 # 1vs0A.347.226 read from T0547.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)N347 (1vs0A)A676 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vs0A)T681 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vs0A)T681 Warning: unaligning (T0547)K353 (1vs0A)G682 because T (delta_L) conformation "forbidden" or filtered. T0547 348 :KLI 1vs0A 677 :GRV T0547 354 :QN 1vs0A 683 :LS Number of specific fragments extracted= 2 number of extra gaps= 2 total=42056 # 1zhvA.347.102 read from T0547.t2k.many.frag # found chain 1zhvA in training set T0547 347 :NKLILKKQN 1zhvA 104 :HLLVRSNDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42057 # 1r8eA.347.41 read from T0547.t2k.many.frag # found chain 1r8eA in template set Warning: unaligning (T0547)N347 (1r8eA)Y42 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLILKKQN 1r8eA 43 :RYYTDSQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=42058 # 1ta0A.347.51 read from T0547.t2k.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)N347 (1ta0A)V127 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1ta0A)R132 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1ta0A)H134 because T (delta_L) conformation "forbidden" or filtered. T0547 348 :KLIL 1ta0A 128 :YVLK T0547 353 :K 1ta0A 133 :P T0547 355 :N 1ta0A 135 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=42061 # 1wdvA.347.55 read from T0547.t2k.many.frag # found chain 1wdvA in training set T0547 347 :NKLILKKQN 1wdvA 56 :YAVVIPGDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42062 # 1r29A.347.68 read from T0547.t2k.many.frag # found chain 1r29A in training set T0547 347 :NKLILKKQN 1r29A 71 :VINLDPEIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42063 # 2arhA.347.63 read from T0547.t2k.many.frag # found chain 2arhA in template set Warning: unaligning (T0547)K348 (2arhA)W63 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (2arhA)F67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (2arhA)G68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (2arhA)V69 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :N 2arhA 62 :P T0547 349 :LIL 2arhA 64 :VEV T0547 355 :N 2arhA 70 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=42066 # 1w5rA.347.125 read from T0547.t2k.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)N355 (1w5rA)G131 because S (epsilon) conformation "forbidden" or filtered. T0547 347 :NKLILKKQ 1w5rA 123 :RYLVDVGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=42067 # 1yj7A.347.37 read from T0547.t2k.many.frag # found chain 1yj7A in training set T0547 347 :NKLILKKQN 1yj7A 57 :MTLSVAAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42068 # 1zxuA.347.101 read from T0547.t2k.many.frag # found chain 1zxuA in training set Warning: unaligning (T0547)K352 (1zxuA)G107 because S (epsilon) conformation "forbidden" or filtered. T0547 347 :NKLIL 1zxuA 102 :WQVFR T0547 353 :KQN 1zxuA 108 :GST Number of specific fragments extracted= 2 number of extra gaps= 1 total=42070 1qz8A expands to /projects/compbio/data/pdb/1qz8.pdb.gz 1qz8A:# 1qz8A.347.86 read from T0547.t2k.many.frag # adding 1qz8A to template set # found chain 1qz8A in template set Warning: unaligning (T0547)K352 (1qz8A)K92 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1qz8A)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 347 :NKLIL 1qz8A 87 :YLYFI T0547 354 :QN 1qz8A 94 :LN Number of specific fragments extracted= 2 number of extra gaps= 1 total=42072 # 1utcA.347.49 read from T0547.t2k.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)K348 (1utcA)V51 because E (beta_S) conformation "forbidden" or filtered. T0547 347 :N 1utcA 50 :V T0547 349 :LILKKQN 1utcA 52 :IIDMNDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=42074 # 1wpbA.348.100 read from T0547.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0547)L349 (1wpbA)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 348 :K 1wpbA 99 :L T0547 350 :ILKKQNP 1wpbA 101 :FDAATEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=42076 # 1s2oA.348.118 read from T0547.t2k.many.frag # found chain 1s2oA in training set Warning: unaligning (T0547)K348 (1s2oA)Y119 because Y (epsilon') conformation "forbidden" or filtered. T0547 349 :LILKKQNP 1s2oA 120 :HLDPQACP Number of specific fragments extracted= 1 number of extra gaps= 1 total=42077 # 2bmoA.348.327 read from T0547.t2k.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)K348 (2bmoA)A328 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LILKKQNP 2bmoA 329 :FVEKDMPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=42078 # 1rloA.348.111 read from T0547.t2k.many.frag # found chain 1rloA in template set T0547 348 :KLILKKQNP 1rloA 112 :AYVSENAPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42079 # 1knwA.348.295 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K353 (1knwA)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLILK 1knwA 296 :VLVDA T0547 354 :QNP 1knwA 302 :FND Number of specific fragments extracted= 2 number of extra gaps= 1 total=42081 # 1m15A.348.166 read from T0547.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)L349 (1m15A)Y168 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1m15A)S174 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :K 1m15A 167 :Y T0547 350 :ILKKQ 1m15A 169 :PLTGM T0547 356 :P 1m15A 175 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=42084 # 1xy7A.348.29 read from T0547.t2k.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)K353 (1xy7A)Q35 because T (delta_L) conformation "forbidden" or filtered. T0547 348 :KLILK 1xy7A 30 :LLVEA T0547 354 :QNP 1xy7A 36 :KVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=42086 # 1gx5A.348.381 read from T0547.t2k.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1gx5A)T385 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1gx5A)D387 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :K 1gx5A 382 :Y T0547 350 :I 1gx5A 384 :L T0547 354 :QNP 1gx5A 388 :PTT Number of specific fragments extracted= 3 number of extra gaps= 2 total=42089 # 1vs0A.348.227 read from T0547.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vs0A)T681 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vs0A)T681 Warning: unaligning (T0547)Q354 (1vs0A)L683 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLI 1vs0A 677 :GRV T0547 353 :K 1vs0A 682 :G T0547 355 :NP 1vs0A 684 :SE Number of specific fragments extracted= 3 number of extra gaps= 2 total=42092 # 2arhA.348.64 read from T0547.t2k.many.frag # found chain 2arhA in template set Warning: unaligning (T0547)K348 (2arhA)W63 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (2arhA)F67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (2arhA)G68 because L (left) conformation "forbidden" or filtered. T0547 349 :LIL 2arhA 64 :VEV T0547 354 :QNP 2arhA 69 :VNP Number of specific fragments extracted= 2 number of extra gaps= 2 total=42094 # 1p57A.348.72 read from T0547.t2k.many.frag # found chain 1p57A in training set T0547 348 :KLILKKQNP 1p57A 73 :FCVDEGRLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42095 # 2fimA.348.155 read from T0547.t2k.many.frag # found chain 2fimA in template set T0547 348 :KLILKKQNP 2fimA 369 :TVIIPGMSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42096 # 1qz8A.348.87 read from T0547.t2k.many.frag # found chain 1qz8A in template set T0547 348 :KLILKKQNP 1qz8A 88 :LYFIKGLNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42097 # 1lm8V.348.64 read from T0547.t2k.many.frag # found chain 1lm8V in template set T0547 348 :KLILKKQNP 1lm8V 118 :LFRDAGTHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42098 # 1by2.348.32 read from T0547.t2k.many.frag # found chain 1by2 in template set Warning: unaligning (T0547)K353 (1by2)L34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1by2)D36 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLILK 1by2 29 :TVCDN T0547 354 :Q 1by2 35 :W T0547 356 :P 1by2 37 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=42101 # 1iab.348.15 read from T0547.t2k.many.frag # found chain 1iab in training set T0547 348 :KLILKKQNP 1iab 16 :PYTFAGVSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=42102 # 1pa1A.348.92 read from T0547.t2k.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)K353 (1pa1A)G586 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1pa1A)L588 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLILK 1pa1A 581 :YILTQ T0547 354 :Q 1pa1A 587 :P T0547 356 :P 1pa1A 589 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=42105 # 1rtqA.348.190 read from T0547.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)K353 (1rtqA)Y196 because L (left) conformation "forbidden" or filtered. T0547 348 :KLILK 1rtqA 191 :VFITD T0547 354 :QNP 1rtqA 197 :TDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=42107 # 1r29A.348.69 read from T0547.t2k.many.frag # found chain 1r29A in training set Warning: unaligning (T0547)N355 (1r29A)N79 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLILKKQ 1r29A 72 :INLDPEI T0547 356 :P 1r29A 80 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=42109 # 1yj7A.348.38 read from T0547.t2k.many.frag # found chain 1yj7A in training set T0547 348 :KLILKKQNP 1yj7A 58 :TLSVAAADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=42110 # 1wdvA.348.56 read from T0547.t2k.many.frag # found chain 1wdvA in training set Warning: unaligning (T0547)N355 (1wdvA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1wdvA)R65 because E (beta_S) conformation "forbidden" or filtered. T0547 348 :KLILKKQ 1wdvA 57 :AVVIPGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=42111 # 2f9hA.348.27 read from T0547.t2k.many.frag # found chain 2f9hA in training set T0547 348 :KLILKKQNP 2f9hA 25 :ILFGETATD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42112 # 1g61A.348.206 read from T0547.t2k.many.frag # found chain 1g61A in training set T0547 348 :KLILKKQNP 1g61A 2207 :AVVGGDTTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=42113 # 1kjqA.348.231 read from T0547.t2k.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)L351 (1kjqA)P236 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1kjqA)S240 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLI 1kjqA 233 :SWQ T0547 352 :KKQ 1kjqA 237 :QQM T0547 356 :P 1kjqA 241 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=42116 # 1zhvA.348.103 read from T0547.t2k.many.frag # found chain 1zhvA in training set T0547 348 :KLILKKQNP 1zhvA 105 :LLVRSNDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42117 # 1rz2A.348.94 read from T0547.t2k.many.frag # found chain 1rz2A in training set Warning: unaligning (T0547)K348 (1rz2A)P95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1rz2A)A99 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LIL 1rz2A 96 :IVQ T0547 353 :KQNP 1rz2A 100 :KDND Number of specific fragments extracted= 2 number of extra gaps= 2 total=42119 # 1ta0A.348.52 read from T0547.t2k.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)Q354 (1ta0A)H134 because T (delta_L) conformation "forbidden" or filtered. T0547 348 :KLILKK 1ta0A 128 :YVLKRP T0547 355 :NP 1ta0A 135 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=42121 # 1ir6A.348.293 read from T0547.t2k.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)K348 (1ir6A)V333 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1ir6A)E338 because D (zeta) conformation "forbidden" or filtered. T0547 349 :LILK 1ir6A 334 :LLDP T0547 354 :QNP 1ir6A 339 :GHP Number of specific fragments extracted= 2 number of extra gaps= 2 total=42123 # 1h6fA.348.160 read from T0547.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)I350 (1h6fA)V261 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KL 1h6fA 259 :IA T0547 351 :LKKQNP 1h6fA 262 :TAYQND Number of specific fragments extracted= 2 number of extra gaps= 1 total=42125 # 1kafA.348.57 read from T0547.t2k.many.frag # found chain 1kafA in training set Warning: unaligning (T0547)L351 (1kafA)G164 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLI 1kafA 161 :RIF T0547 352 :KKQNP 1kafA 165 :YKMME Number of specific fragments extracted= 2 number of extra gaps= 1 total=42127 # 2bmoA.349.328 read from T0547.t2k.many.frag # found chain 2bmoA in training set T0547 349 :LILKKQNPK 2bmoA 329 :FVEKDMPED Number of specific fragments extracted= 1 number of extra gaps= 0 total=42128 # 1rloA.349.112 read from T0547.t2k.many.frag # found chain 1rloA in template set T0547 349 :LILKKQNPK 1rloA 113 :YVSENAPEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42129 # 1wpbA.349.101 read from T0547.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0547)L349 (1wpbA)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 350 :ILKKQNPK 1wpbA 101 :FDAATEAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=42130 # 1s2oA.349.119 read from T0547.t2k.many.frag # found chain 1s2oA in training set Warning: unaligning (T0547)N355 (1s2oA)C126 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LILKKQ 1s2oA 120 :HLDPQA T0547 356 :PK 1s2oA 127 :PT Number of specific fragments extracted= 2 number of extra gaps= 1 total=42132 # 1m15A.349.167 read from T0547.t2k.many.frag # found chain 1m15A in training set T0547 349 :LILKKQNPK 1m15A 168 :YPLTGMSKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42133 # 1xy7A.349.30 read from T0547.t2k.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)K353 (1xy7A)Q35 because T (delta_L) conformation "forbidden" or filtered. T0547 349 :LILK 1xy7A 31 :LVEA T0547 354 :QNPK 1xy7A 36 :KVGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=42135 # 1knwA.349.296 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K353 (1knwA)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 349 :LILK 1knwA 297 :LVDA T0547 354 :QNPK 1knwA 302 :FNDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=42137 # 1g61A.349.207 read from T0547.t2k.many.frag # found chain 1g61A in training set T0547 349 :LILKKQNPK 1g61A 2208 :VVGGDTTGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42138 # 1vs0A.349.228 read from T0547.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vs0A)T681 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vs0A)T681 Warning: unaligning (T0547)K353 (1vs0A)G682 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1vs0A)L683 because Y (epsilon') conformation "forbidden" or filtered. T0547 349 :LI 1vs0A 678 :RV T0547 355 :NPK 1vs0A 684 :SER Number of specific fragments extracted= 2 number of extra gaps= 1 total=42140 # 2arhA.349.65 read from T0547.t2k.many.frag # found chain 2arhA in template set Warning: unaligning (T0547)N355 (2arhA)N70 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LILKKQ 2arhA 64 :VEVFGV T0547 356 :PK 2arhA 71 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=42142 # 1iab.349.16 read from T0547.t2k.many.frag # found chain 1iab in training set Warning: unaligning (T0547)K353 (1iab)G21 because L (left) conformation "forbidden" or filtered. T0547 349 :LILK 1iab 17 :YTFA T0547 354 :QNPK 1iab 22 :VSGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=42144 # 1qz8A.349.88 read from T0547.t2k.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)K353 (1qz8A)G93 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1qz8A)L94 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LILK 1qz8A 89 :YFIK T0547 355 :NPK 1qz8A 95 :NNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=42146 # 1rtqA.349.191 read from T0547.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)K352 (1rtqA)D195 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1rtqA)Y196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1rtqA)T197 because E (beta_S) conformation "forbidden" or filtered. T0547 349 :LIL 1rtqA 192 :FIT T0547 355 :NPK 1rtqA 198 :DSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=42148 # 1gx5A.349.382 read from T0547.t2k.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1gx5A)T385 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :I 1gx5A 384 :L T0547 352 :KKQNPK 1gx5A 386 :RDPTTP Number of specific fragments extracted= 2 number of extra gaps= 2 total=42150 # 1kjqA.349.232 read from T0547.t2k.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)L349 (1kjqA)W234 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1kjqA)P236 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1kjqA)Q237 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1kjqA)S240 because P (beta_P) conformation "forbidden" or filtered. T0547 350 :I 1kjqA 235 :Q T0547 353 :KQ 1kjqA 238 :QM T0547 356 :PK 1kjqA 241 :PL Number of specific fragments extracted= 3 number of extra gaps= 3 total=42153 # 1r29A.349.70 read from T0547.t2k.many.frag # found chain 1r29A in training set T0547 349 :LILKKQNPK 1r29A 73 :NLDPEINPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42154 # 1kafA.349.58 read from T0547.t2k.many.frag # found chain 1kafA in training set Warning: unaligning (T0547)L351 (1kafA)G164 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1kafA)Y165 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1kafA)K166 because L (left) conformation "forbidden" or filtered. T0547 349 :LI 1kafA 162 :IF T0547 354 :QNPK 1kafA 167 :MMEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=42156 1vhvA expands to /projects/compbio/data/pdb/1vhv.pdb.gz 1vhvA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1761, because occupancy 0.350 <= existing 0.650 in 1vhvA Skipped atom 1763, because occupancy 0.350 <= existing 0.650 in 1vhvA Skipped atom 1765, because occupancy 0.350 <= existing 0.650 in 1vhvA Skipped atom 1767, because occupancy 0.350 <= existing 0.650 in 1vhvA Skipped atom 1769, because occupancy 0.350 <= existing 0.650 in 1vhvA Skipped atom 1771, because occupancy 0.350 <= existing 0.650 in 1vhvA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1788, because occupancy 0.350 <= existing 0.650 in 1vhvA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1790, because occupancy 0.350 <= existing 0.650 in 1vhvA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1792, because occupancy 0.350 <= existing 0.650 in 1vhvA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1794, because occupancy 0.350 <= existing 0.650 in 1vhvA # 1vhvA.349.145 read from T0547.t2k.many.frag # adding 1vhvA to template set # found chain 1vhvA in template set Warning: unaligning (T0547)P356 (1vhvA)Q140 because G (3-10) conformation "forbidden" or filtered. T0547 349 :LILKKQN 1vhvA 133 :TVSWHRS T0547 357 :K 1vhvA 141 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=42158 # 1by2.349.33 read from T0547.t2k.many.frag # found chain 1by2 in template set Warning: unaligning (T0547)N355 (1by2)D36 because Y (epsilon') conformation "forbidden" or filtered. T0547 349 :LILKKQ 1by2 30 :VCDNLW T0547 356 :PK 1by2 37 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=42160 # 1to6A.349.210 read from T0547.t2k.many.frag # found chain 1to6A in template set T0547 349 :LILKKQNPK 1to6A 211 :GLDSTMFEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42161 # 1lm8V.349.65 read from T0547.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)N355 (1lm8V)H125 because L (left) conformation "forbidden" or filtered. T0547 349 :LILKKQ 1lm8V 119 :FRDAGT T0547 356 :PK 1lm8V 126 :DG Number of specific fragments extracted= 2 number of extra gaps= 1 total=42163 # 1r26A.349.104 read from T0547.t2k.many.frag # found chain 1r26A in training set T0547 349 :LILKKQNPK 1r26A 86 :HVIGANPGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=42164 # 1p57A.349.73 read from T0547.t2k.many.frag # found chain 1p57A in training set T0547 349 :LILKKQNPK 1p57A 74 :CVDEGRLPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=42165 # 1bob.349.135 read from T0547.t2k.many.frag # found chain 1bob in template set T0547 349 :LILKKQNPK 1bob 136 :VYKSSLVDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42166 # 1pa1A.349.93 read from T0547.t2k.many.frag # found chain 1pa1A in template set T0547 349 :LILKKQNPK 1pa1A 582 :ILTQGPLPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42167 # 2f5xA.349.241 read from T0547.t2k.many.frag # found chain 2f5xA in training set T0547 349 :LILKKQNPK 2f5xA 230 :WAPKGTPKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42168 # 1tv8A.349.166 read from T0547.t2k.many.frag # found chain 1tv8A in template set Warning: unaligning (T0547)K353 (1tv8A)G171 because T (delta_L) conformation "forbidden" or filtered. T0547 349 :LILK 1tv8A 167 :VIQK T0547 354 :QNPK 1tv8A 172 :INDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=42170 # 1ta0A.349.53 read from T0547.t2k.many.frag # found chain 1ta0A in template set T0547 349 :LILKKQNPK 1ta0A 129 :VLKRPHVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42171 # 2fimA.349.156 read from T0547.t2k.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)N355 (2fimA)S376 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K357 (2fimA)E378 because G (3-10) conformation "forbidden" or filtered. T0547 349 :LILKKQ 2fimA 370 :VIIPGM T0547 356 :P 2fimA 377 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=42173 # 1yj7A.349.39 read from T0547.t2k.many.frag # found chain 1yj7A in training set T0547 349 :LILKKQNPK 1yj7A 59 :LSVAAADFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42174 # 2bmoA.350.329 read from T0547.t2k.many.frag # found chain 2bmoA in training set T0547 350 :ILKKQNPKL 2bmoA 330 :VEKDMPEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42175 # 1rloA.350.113 read from T0547.t2k.many.frag # found chain 1rloA in template set T0547 350 :ILKKQNPKL 1rloA 114 :VSENAPEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=42176 # 1wpbA.350.102 read from T0547.t2k.many.frag # found chain 1wpbA in template set T0547 350 :ILKKQNPKL 1wpbA 101 :FDAATEARY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42177 # 1s2oA.350.120 read from T0547.t2k.many.frag # found chain 1s2oA in training set T0547 350 :ILKKQNPKL 1s2oA 121 :LDPQACPTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42178 # 1m15A.350.168 read from T0547.t2k.many.frag # found chain 1m15A in training set T0547 350 :ILKKQNPKL 1m15A 169 :PLTGMSKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=42179 # 1vs0A.350.229 read from T0547.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vs0A)T681 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vs0A)T681 Warning: unaligning (T0547)K353 (1vs0A)G682 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1vs0A)L683 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :I 1vs0A 679 :V T0547 355 :NPKL 1vs0A 684 :SERE Number of specific fragments extracted= 2 number of extra gaps= 1 total=42181 # 1g61A.350.208 read from T0547.t2k.many.frag # found chain 1g61A in training set T0547 350 :ILKKQNPKL 1g61A 2209 :VGGDTTGPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42182 # 1qz8A.350.89 read from T0547.t2k.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)K353 (1qz8A)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 350 :ILK 1qz8A 90 :FIK T0547 354 :QNPKL 1qz8A 94 :LNNLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=42184 # 1xy7A.350.31 read from T0547.t2k.many.frag # found chain 1xy7A in training set T0547 350 :ILKKQNPKL 1xy7A 32 :VEAQKVGDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42185 # 2arhA.350.66 read from T0547.t2k.many.frag # found chain 2arhA in template set Warning: unaligning (T0547)K353 (2arhA)G68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K357 (2arhA)N72 because G (3-10) conformation "forbidden" or filtered. T0547 350 :ILK 2arhA 65 :EVF T0547 354 :QNP 2arhA 69 :VNP T0547 358 :L 2arhA 73 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=42188 # 1vhvA.350.146 read from T0547.t2k.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)K353 (1vhvA)H137 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1vhvA)Q140 because G (3-10) conformation "forbidden" or filtered. T0547 350 :ILK 1vhvA 134 :VSW T0547 354 :QN 1vhvA 138 :RS T0547 357 :KL 1vhvA 141 :TP Number of specific fragments extracted= 3 number of extra gaps= 2 total=42191 # 1iab.350.17 read from T0547.t2k.many.frag # found chain 1iab in training set T0547 350 :ILKKQNPKL 1iab 18 :TFAGVSGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42192 # 1r29A.350.71 read from T0547.t2k.many.frag # found chain 1r29A in training set T0547 350 :ILKKQNPKL 1r29A 74 :LDPEINPEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=42193 # 1kafA.350.59 read from T0547.t2k.many.frag # found chain 1kafA in training set Warning: unaligning (T0547)K353 (1kafA)K166 because L (left) conformation "forbidden" or filtered. T0547 350 :ILK 1kafA 163 :FGY T0547 354 :QNPKL 1kafA 167 :MMEHH Number of specific fragments extracted= 2 number of extra gaps= 1 total=42195 # 1rtqA.350.192 read from T0547.t2k.many.frag # found chain 1rtqA in training set T0547 350 :ILKKQNPKL 1rtqA 193 :ITDYTDSNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=42196 # 1to6A.350.211 read from T0547.t2k.many.frag # found chain 1to6A in template set T0547 350 :ILKKQNPKL 1to6A 212 :LDSTMFEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42197 # 1knwA.350.297 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K353 (1knwA)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :ILK 1knwA 298 :VDA T0547 354 :QNPKL 1knwA 302 :FNDLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=42199 # 1tv8A.350.167 read from T0547.t2k.many.frag # found chain 1tv8A in template set T0547 350 :ILKKQNPKL 1tv8A 168 :IQKGINDDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=42200 # 1kjqA.350.233 read from T0547.t2k.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)L351 (1kjqA)P236 because C (cis) conformation "forbidden" or filtered. T0547 350 :I 1kjqA 235 :Q T0547 352 :KKQNPKL 1kjqA 237 :QQMSPLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=42202 # 1gx5A.350.383 read from T0547.t2k.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L351 (1gx5A)T385 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :I 1gx5A 384 :L T0547 353 :KQNPKL 1gx5A 387 :DPTTPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=42204 # 1zr6A.350.327 read from T0547.t2k.many.frag # found chain 1zr6A in training set Warning: unaligning (T0547)L351 (1zr6A)A323 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1zr6A)R325 because P (beta_P) conformation "forbidden" or filtered. T0547 350 :I 1zr6A 322 :T T0547 352 :K 1zr6A 324 :P T0547 354 :QNPKL 1zr6A 326 :LSDEA Number of specific fragments extracted= 3 number of extra gaps= 2 total=42207 # 1yj7A.350.40 read from T0547.t2k.many.frag # found chain 1yj7A in training set T0547 350 :ILKKQNPKL 1yj7A 60 :SVAAADFVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42208 # 1h6fA.350.162 read from T0547.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)N355 (1h6fA)N266 because P (beta_P) conformation "forbidden" or filtered. T0547 350 :ILKKQ 1h6fA 261 :VTAYQ T0547 356 :PKL 1h6fA 267 :DKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=42210 # 1pa1A.350.94 read from T0547.t2k.many.frag # found chain 1pa1A in template set T0547 350 :ILKKQNPKL 1pa1A 583 :LTQGPLPNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=42211 # 1r26A.350.105 read from T0547.t2k.many.frag # found chain 1r26A in training set Warning: unaligning (T0547)K352 (1r26A)G89 because S (epsilon) conformation "forbidden" or filtered. T0547 350 :IL 1r26A 87 :VI T0547 353 :KQNPKL 1r26A 90 :ANPGML Number of specific fragments extracted= 2 number of extra gaps= 1 total=42213 # 1b65A.350.315 read from T0547.t2k.many.frag # found chain 1b65A in template set T0547 350 :ILKKQNPKL 1b65A 316 :VNDEPLDTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42214 # 1bupA.350.145 read from T0547.t2k.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)I350 (1bupA)V146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1bupA)F150 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1bupA)N151 because P (beta_P) conformation "forbidden" or filtered. T0547 351 :LKK 1bupA 147 :PAY T0547 356 :PKL 1bupA 152 :DSQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=42216 1ll2A expands to /projects/compbio/data/pdb/1ll2.pdb.gz 1ll2A:# 1ll2A.350.38 read from T0547.t2k.many.frag # adding 1ll2A to template set # found chain 1ll2A in template set T0547 350 :ILKKQNPKL 1ll2A 39 :TTPQVSDTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=42217 # 1lm8V.350.66 read from T0547.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)K357 (1lm8V)G127 because P (beta_P) conformation "forbidden" or filtered. T0547 350 :ILKKQNP 1lm8V 120 :RDAGTHD T0547 358 :L 1lm8V 128 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=42219 # 1bob.350.136 read from T0547.t2k.many.frag # found chain 1bob in template set Warning: unaligning (T0547)K352 (1bob)S139 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :IL 1bob 137 :YK T0547 353 :KQNPKL 1bob 140 :SLVDDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=42221 # 2bmoA.351.330 read from T0547.t2k.many.frag # found chain 2bmoA in training set T0547 351 :LKKQNPKLI 2bmoA 331 :EKDMPEDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42222 # 1rloA.351.114 read from T0547.t2k.many.frag # found chain 1rloA in template set Warning: unaligning (T0547)K353 (1rloA)N117 because G (3-10) conformation "forbidden" or filtered. T0547 351 :LK 1rloA 115 :SE T0547 354 :QNPKLI 1rloA 118 :APEAFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=42224 # 1g61A.351.209 read from T0547.t2k.many.frag # found chain 1g61A in training set T0547 351 :LKKQNPKLI 1g61A 2210 :GGDTTGPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42225 # 1s2oA.351.121 read from T0547.t2k.many.frag # found chain 1s2oA in training set T0547 351 :LKKQNPKLI 1s2oA 122 :DPQACPTVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42226 # 1vs0A.351.230 read from T0547.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)L351 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vs0A)T681 Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vs0A)T681 Warning: unaligning (T0547)Q354 (1vs0A)L683 because Y (epsilon') conformation "forbidden" or filtered. T0547 353 :K 1vs0A 682 :G T0547 355 :NPKLI 1vs0A 684 :SEREL Number of specific fragments extracted= 2 number of extra gaps= 2 total=42228 # 1wpbA.351.103 read from T0547.t2k.many.frag # found chain 1wpbA in template set T0547 351 :LKKQNPKLI 1wpbA 102 :DAATEARYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42229 # 1vhvA.351.147 read from T0547.t2k.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)K353 (1vhvA)H137 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1vhvA)Q140 because G (3-10) conformation "forbidden" or filtered. T0547 351 :LK 1vhvA 135 :SW T0547 354 :QN 1vhvA 138 :RS T0547 357 :KLI 1vhvA 141 :TPV Number of specific fragments extracted= 3 number of extra gaps= 2 total=42232 # 1qz8A.351.90 read from T0547.t2k.many.frag # found chain 1qz8A in template set T0547 351 :LKKQNPKLI 1qz8A 91 :IKGLNNLNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42233 # 1m15A.351.169 read from T0547.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)K352 (1m15A)T171 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1m15A)G172 because T (delta_L) conformation "forbidden" or filtered. T0547 351 :L 1m15A 170 :L T0547 354 :QNPKLI 1m15A 173 :MSKATQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=42235 # 2arhA.351.67 read from T0547.t2k.many.frag # found chain 2arhA in template set Warning: unaligning (T0547)K352 (2arhA)F67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (2arhA)G68 because L (left) conformation "forbidden" or filtered. T0547 351 :L 2arhA 66 :V T0547 354 :QNPKLI 2arhA 69 :VNPNLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=42237 # 1iab.351.18 read from T0547.t2k.many.frag # found chain 1iab in training set Warning: unaligning (T0547)K352 (1iab)A20 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1iab)S23 because P (beta_P) conformation "forbidden" or filtered. T0547 351 :L 1iab 19 :F T0547 353 :KQ 1iab 21 :GV T0547 356 :PKLI 1iab 24 :GADQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=42240 # 1rtqA.351.193 read from T0547.t2k.many.frag # found chain 1rtqA in training set T0547 351 :LKKQNPKLI 1rtqA 194 :TDYTDSNFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=42241 # 1ll2A.351.39 read from T0547.t2k.many.frag # found chain 1ll2A in template set T0547 351 :LKKQNPKLI 1ll2A 40 :TPQVSDTMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42242 # 1xy7A.351.32 read from T0547.t2k.many.frag # found chain 1xy7A in training set T0547 351 :LKKQNPKLI 1xy7A 33 :EAQKVGDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42243 # 1r29A.351.72 read from T0547.t2k.many.frag # found chain 1r29A in training set Warning: unaligning (T0547)Q354 (1r29A)I78 because P (beta_P) conformation "forbidden" or filtered. T0547 351 :LKK 1r29A 75 :DPE T0547 355 :NPKLI 1r29A 79 :NPEGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=42245 # 1kjqA.351.234 read from T0547.t2k.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)L351 (1kjqA)P236 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1kjqA)Q238 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1kjqA)S240 because P (beta_P) conformation "forbidden" or filtered. T0547 352 :K 1kjqA 237 :Q T0547 354 :Q 1kjqA 239 :M T0547 356 :PKLI 1kjqA 241 :PLAL Number of specific fragments extracted= 3 number of extra gaps= 3 total=42248 # 1kafA.351.60 read from T0547.t2k.many.frag # found chain 1kafA in training set Warning: unaligning (T0547)L351 (1kafA)G164 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1kafA)M167 because P (beta_P) conformation "forbidden" or filtered. T0547 352 :KK 1kafA 165 :YK T0547 355 :NPKLI 1kafA 168 :MEHHI Number of specific fragments extracted= 2 number of extra gaps= 2 total=42250 # 1tv8A.351.168 read from T0547.t2k.many.frag # found chain 1tv8A in template set T0547 351 :LKKQNPKLI 1tv8A 169 :QKGINDDQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42251 # 1zr6A.351.328 read from T0547.t2k.many.frag # found chain 1zr6A in training set Warning: unaligning (T0547)L351 (1zr6A)A323 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1zr6A)R325 because P (beta_P) conformation "forbidden" or filtered. T0547 352 :K 1zr6A 324 :P T0547 354 :QNPKLI 1zr6A 326 :LSDEAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=42253 # 1h6fA.351.163 read from T0547.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)K352 (1h6fA)A263 because E (beta_S) conformation "forbidden" or filtered. T0547 351 :L 1h6fA 262 :T T0547 353 :KQNPKLI 1h6fA 264 :YQNDKIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=42255 # 1bupA.351.146 read from T0547.t2k.many.frag # found chain 1bupA in training set T0547 351 :LKKQNPKLI 1bupA 147 :PAYFNDSQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42256 1f8vA expands to /projects/compbio/data/pdb/1f8v.pdb.gz 1f8vA:# 1f8vA.351.327 read from T0547.t2k.many.frag # adding 1f8vA to template set # found chain 1f8vA in template set T0547 351 :LKKQNPKLI 1f8vA 334 :SPPFDPLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42257 # 1to6A.351.212 read from T0547.t2k.many.frag # found chain 1to6A in template set T0547 351 :LKKQNPKLI 1to6A 213 :DSTMFEVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42258 # 1b65A.351.316 read from T0547.t2k.many.frag # found chain 1b65A in template set T0547 351 :LKKQNPKLI 1b65A 317 :NDEPLDTVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42259 # 1r26A.351.106 read from T0547.t2k.many.frag # found chain 1r26A in training set Warning: unaligning (T0547)K352 (1r26A)G89 because S (epsilon) conformation "forbidden" or filtered. T0547 351 :L 1r26A 88 :I T0547 353 :KQNPKLI 1r26A 90 :ANPGMLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=42261 1gmlA expands to /projects/compbio/data/pdb/1gml.pdb.gz 1gmlA:# 1gmlA.351.84 read from T0547.t2k.many.frag # adding 1gmlA to template set # found chain 1gmlA in template set Warning: unaligning (T0547)K352 (1gmlA)K294 because Y (epsilon') conformation "forbidden" or filtered. T0547 351 :L 1gmlA 293 :E T0547 353 :KQNPKLI 1gmlA 295 :GISDLAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=42263 # 1mtyB.351.300 read from T0547.t2k.many.frag # found chain 1mtyB in training set T0547 351 :LKKQNPKLI 1mtyB 306 :DPEFSDYNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42264 # 1q5zA.351.63 read from T0547.t2k.many.frag # found chain 1q5zA in training set T0547 351 :LKKQNPKLI 1q5zA 556 :DTSTPFPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42265 # 1gx5A.351.384 read from T0547.t2k.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)K352 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. T0547 351 :L 1gx5A 385 :T T0547 353 :KQNPKLI 1gx5A 387 :DPTTPLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=42267 # 2f5xA.351.243 read from T0547.t2k.many.frag # found chain 2f5xA in training set Warning: unaligning (T0547)K352 (2f5xA)K233 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (2f5xA)G234 because T (delta_L) conformation "forbidden" or filtered. T0547 351 :L 2f5xA 232 :P T0547 354 :QNPKLI 2f5xA 235 :TPKPVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=42269 # 1rloA.352.115 read from T0547.t2k.many.frag # found chain 1rloA in template set Warning: unaligning (T0547)N355 (1rloA)P119 because P (beta_P) conformation "forbidden" or filtered. T0547 352 :KKQ 1rloA 116 :ENA T0547 356 :PKLID 1rloA 120 :EAFVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=42271 # 2bmoA.352.331 read from T0547.t2k.many.frag # found chain 2bmoA in training set T0547 352 :KKQNPKLID 2bmoA 332 :KDMPEDLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42272 # 1g61A.352.210 read from T0547.t2k.many.frag # found chain 1g61A in training set Warning: unaligning (T0547)N355 (1g61A)T2214 because P (beta_P) conformation "forbidden" or filtered. T0547 352 :KKQ 1g61A 2211 :GDT T0547 356 :PKLID 1g61A 2215 :GPELL Number of specific fragments extracted= 2 number of extra gaps= 1 total=42274 # 1vhvA.352.148 read from T0547.t2k.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)K353 (1vhvA)H137 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1vhvA)Q140 because G (3-10) conformation "forbidden" or filtered. T0547 352 :K 1vhvA 136 :W T0547 354 :QN 1vhvA 138 :RS T0547 357 :KLID 1vhvA 141 :TPVN Number of specific fragments extracted= 3 number of extra gaps= 2 total=42277 # 1s2oA.352.122 read from T0547.t2k.many.frag # found chain 1s2oA in training set T0547 352 :KKQNPKLID 1s2oA 123 :PQACPTVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=42278 # 1vs0A.352.231 read from T0547.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)K352 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vs0A)T681 Warning: unaligning (T0547)K353 (1vs0A)G682 because T (delta_L) conformation "forbidden" or filtered. T0547 354 :QNPKLID 1vs0A 683 :LSERELA Number of specific fragments extracted= 1 number of extra gaps= 1 total=42279 # 1f8vA.352.328 read from T0547.t2k.many.frag # found chain 1f8vA in template set T0547 352 :KKQNPKLID 1f8vA 335 :PPFDPLALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42280 # 1qz8A.352.91 read from T0547.t2k.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)K352 (1qz8A)K92 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1qz8A)L94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1qz8A)N95 because P (beta_P) conformation "forbidden" or filtered. T0547 353 :K 1qz8A 93 :G T0547 356 :PKLID 1qz8A 96 :NLNRG Number of specific fragments extracted= 2 number of extra gaps= 2 total=42282 # 1cnv.352.197 read from T0547.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)K352 (1cnv)T198 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1cnv)N200 because D (zeta) conformation "forbidden" or filtered. T0547 353 :K 1cnv 199 :G T0547 355 :NPKLID 1cnv 201 :IQRIRN Number of specific fragments extracted= 2 number of extra gaps= 2 total=42284 # 1tv8A.352.169 read from T0547.t2k.many.frag # found chain 1tv8A in template set T0547 352 :KKQNPKLID 1tv8A 170 :KGINDDQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=42285 # 1ll2A.352.40 read from T0547.t2k.many.frag # found chain 1ll2A in template set T0547 352 :KKQNPKLID 1ll2A 41 :PQVSDTMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42286 # 1q5zA.352.64 read from T0547.t2k.many.frag # found chain 1q5zA in training set T0547 352 :KKQNPKLID 1q5zA 557 :TSTPFPVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42287 # 1wpbA.352.104 read from T0547.t2k.many.frag # found chain 1wpbA in template set T0547 352 :KKQNPKLID 1wpbA 103 :AATEARYLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=42288 # 1rtqA.352.194 read from T0547.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)K353 (1rtqA)Y196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1rtqA)T197 because E (beta_S) conformation "forbidden" or filtered. T0547 352 :K 1rtqA 195 :D T0547 355 :NPKLID 1rtqA 198 :DSNFTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=42290 # 2arhA.352.68 read from T0547.t2k.many.frag # found chain 2arhA in template set Warning: unaligning (T0547)K352 (2arhA)F67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (2arhA)G68 because L (left) conformation "forbidden" or filtered. T0547 354 :QNPKLID 2arhA 69 :VNPNLRN Number of specific fragments extracted= 1 number of extra gaps= 1 total=42291 # 1m15A.352.170 read from T0547.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)K352 (1m15A)T171 because P (beta_P) conformation "forbidden" or filtered. T0547 353 :KQNPKLID 1m15A 172 :GMSKATQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=42292 # 1bupA.352.147 read from T0547.t2k.many.frag # found chain 1bupA in training set T0547 352 :KKQNPKLID 1bupA 148 :AYFNDSQRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=42293 # 1kjqA.352.235 read from T0547.t2k.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)K352 (1kjqA)Q237 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1kjqA)S240 because P (beta_P) conformation "forbidden" or filtered. T0547 353 :KQ 1kjqA 238 :QM T0547 356 :PKLID 1kjqA 241 :PLALE Number of specific fragments extracted= 2 number of extra gaps= 2 total=42295 # 1zr6A.352.329 read from T0547.t2k.many.frag # found chain 1zr6A in training set Warning: unaligning (T0547)N355 (1zr6A)S327 because P (beta_P) conformation "forbidden" or filtered. T0547 352 :KKQ 1zr6A 324 :PRL T0547 356 :PKLID 1zr6A 328 :DEAIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=42297 1ei7A expands to /projects/compbio/data/pdb/1ei7.pdb.gz 1ei7A:# 1ei7A.352.72 read from T0547.t2k.many.frag # adding 1ei7A to template set # found chain 1ei7A in template set T0547 352 :KKQNPKLID 1ei7A 73 :NAVLDPLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=42298 # 1gmlA.352.85 read from T0547.t2k.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)Q354 (1gmlA)I296 because E (beta_S) conformation "forbidden" or filtered. T0547 352 :KK 1gmlA 294 :KG T0547 355 :NPKLID 1gmlA 297 :SDLAQH Number of specific fragments extracted= 2 number of extra gaps= 1 total=42300 1w9zA expands to /projects/compbio/data/pdb/1w9z.pdb.gz 1w9zA:# 1w9zA.352.200 read from T0547.t2k.many.frag # adding 1w9zA to template set # found chain 1w9zA in template set Warning: unaligning (T0547)N355 (1w9zA)S204 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1w9zA)C205 because Y (epsilon') conformation "forbidden" or filtered. T0547 352 :KKQ 1w9zA 201 :AET T0547 357 :KLID 1w9zA 206 :ASLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=42302 # 1r26A.352.107 read from T0547.t2k.many.frag # found chain 1r26A in training set T0547 352 :KKQNPKLID 1r26A 89 :GANPGMLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=42303 # 1iab.352.19 read from T0547.t2k.many.frag # found chain 1iab in training set T0547 352 :KKQNPKLID 1iab 20 :AGVSGADQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=42304 # 1h6fA.352.164 read from T0547.t2k.many.frag # found chain 1h6fA in training set T0547 352 :KKQNPKLID 1h6fA 263 :AYQNDKITQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=42305 # 1xy7A.352.33 read from T0547.t2k.many.frag # found chain 1xy7A in training set T0547 352 :KKQNPKLID 1xy7A 34 :AQKVGDAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=42306 # 1vjvA.352.181 read from T0547.t2k.many.frag # found chain 1vjvA in training set Warning: unaligning (T0547)N355 (1vjvA)T269 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1vjvA)N270 because G (3-10) conformation "forbidden" or filtered. T0547 352 :KKQ 1vjvA 266 :SGT T0547 357 :KLID 1vjvA 271 :FMRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=42308 # 1to6A.352.213 read from T0547.t2k.many.frag # found chain 1to6A in template set T0547 352 :KKQNPKLID 1to6A 214 :STMFEVVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=42309 # 1tqhA.352.227 read from T0547.t2k.many.frag # found chain 1tqhA in training set T0547 352 :KKQNPKLID 1tqhA 228 :DQEKDQLHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42310 # 1r29A.352.73 read from T0547.t2k.many.frag # found chain 1r29A in training set T0547 352 :KKQNPKLID 1r29A 76 :PEINPEGFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42311 # 1rloA.353.116 read from T0547.t2k.many.frag # found chain 1rloA in template set Warning: unaligning (T0547)N355 (1rloA)P119 because P (beta_P) conformation "forbidden" or filtered. T0547 353 :KQ 1rloA 117 :NA T0547 356 :PKLIDE 1rloA 120 :EAFVAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=42313 # 1vhvA.353.149 read from T0547.t2k.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)P356 (1vhvA)Q140 because G (3-10) conformation "forbidden" or filtered. T0547 353 :KQN 1vhvA 137 :HRS T0547 357 :KLIDE 1vhvA 141 :TPVNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=42315 # 1g61A.353.211 read from T0547.t2k.many.frag # found chain 1g61A in training set T0547 353 :KQNPKLIDE 1g61A 2212 :DTTGPELLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42316 # 1cnv.353.198 read from T0547.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)K353 (1cnv)G199 because T (delta_L) conformation "forbidden" or filtered. T0547 354 :QNPKLIDE 1cnv 200 :NIQRIRNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=42317 # 2bmoA.353.332 read from T0547.t2k.many.frag # found chain 2bmoA in training set T0547 353 :KQNPKLIDE 2bmoA 333 :DMPEDLKRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42318 # 1ll2A.353.41 read from T0547.t2k.many.frag # found chain 1ll2A in template set T0547 353 :KQNPKLIDE 1ll2A 42 :QVSDTMRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42319 # 1q5zA.353.65 read from T0547.t2k.many.frag # found chain 1q5zA in training set Warning: unaligning (T0547)N355 (1q5zA)P560 because P (beta_P) conformation "forbidden" or filtered. T0547 353 :KQ 1q5zA 558 :ST T0547 356 :PKLIDE 1q5zA 561 :FPVRRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=42321 # 1s2oA.353.123 read from T0547.t2k.many.frag # found chain 1s2oA in training set T0547 353 :KQNPKLIDE 1s2oA 124 :QACPTVIDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=42322 # 1f8vA.353.329 read from T0547.t2k.many.frag # found chain 1f8vA in template set T0547 353 :KQNPKLIDE 1f8vA 336 :PFDPLALEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=42323 # 1zr6A.353.330 read from T0547.t2k.many.frag # found chain 1zr6A in training set Warning: unaligning (T0547)K353 (1zr6A)R325 because P (beta_P) conformation "forbidden" or filtered. T0547 354 :QNPKLIDE 1zr6A 326 :LSDEAIQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=42324 # 1bupA.353.148 read from T0547.t2k.many.frag # found chain 1bupA in training set T0547 353 :KQNPKLIDE 1bupA 149 :YFNDSQRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42325 # 1r26A.353.108 read from T0547.t2k.many.frag # found chain 1r26A in training set T0547 353 :KQNPKLIDE 1r26A 90 :ANPGMLRQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42326 # 1w9zA.353.201 read from T0547.t2k.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)P356 (1w9zA)C205 because Y (epsilon') conformation "forbidden" or filtered. T0547 353 :KQN 1w9zA 202 :ETS T0547 357 :KLIDE 1w9zA 206 :ASLTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=42328 # 1vs0A.353.232 read from T0547.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)N355 (1vs0A)S684 because E (beta_S) conformation "forbidden" or filtered. T0547 353 :KQ 1vs0A 682 :GL T0547 356 :PKLIDE 1vs0A 685 :ERELAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=42330 # 1rtqA.353.195 read from T0547.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)K353 (1rtqA)Y196 because L (left) conformation "forbidden" or filtered. T0547 354 :QNPKLIDE 1rtqA 197 :TDSNFTQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=42331 # 1tv8A.353.170 read from T0547.t2k.many.frag # found chain 1tv8A in template set T0547 353 :KQNPKLIDE 1tv8A 171 :GINDDQIIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42332 # 1gmlA.353.86 read from T0547.t2k.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)K353 (1gmlA)G295 because P (beta_P) conformation "forbidden" or filtered. T0547 354 :QNPKLIDE 1gmlA 296 :ISDLAQHY Number of specific fragments extracted= 1 number of extra gaps= 1 total=42333 # 1a8d.353.231 read from T0547.t2k.many.frag # found chain 1a8d in training set T0547 353 :KQNPKLIDE 1a8d 232 :ALNPKEIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42334 # 1ei7A.353.73 read from T0547.t2k.many.frag # found chain 1ei7A in template set T0547 353 :KQNPKLIDE 1ei7A 74 :AVLDPLVTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42335 # 1qz8A.353.92 read from T0547.t2k.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)K353 (1qz8A)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 354 :QNPKLIDE 1qz8A 94 :LNNLNRGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=42336 1tl9A expands to /projects/compbio/data/pdb/1tl9.pdb.gz 1tl9A:# 1tl9A.353.203 read from T0547.t2k.many.frag # adding 1tl9A to template set # found chain 1tl9A in template set T0547 353 :KQNPKLIDE 1tl9A 229 :KAPSDLYQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42337 # 1mtyB.353.302 read from T0547.t2k.many.frag # found chain 1mtyB in training set T0547 353 :KQNPKLIDE 1mtyB 308 :EFSDYNRTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42338 # 1h6fA.353.165 read from T0547.t2k.many.frag # found chain 1h6fA in training set T0547 353 :KQNPKLIDE 1h6fA 264 :YQNDKITQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42339 # 1tqhA.353.228 read from T0547.t2k.many.frag # found chain 1tqhA in training set T0547 353 :KQNPKLIDE 1tqhA 229 :QEKDQLHED Number of specific fragments extracted= 1 number of extra gaps= 0 total=42340 # 2arhA.353.69 read from T0547.t2k.many.frag # found chain 2arhA in template set Warning: unaligning (T0547)K353 (2arhA)G68 because L (left) conformation "forbidden" or filtered. T0547 354 :QNPKLIDE 2arhA 69 :VNPNLRNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=42341 # 1kjqA.353.236 read from T0547.t2k.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)N355 (1kjqA)S240 because P (beta_P) conformation "forbidden" or filtered. T0547 353 :KQ 1kjqA 238 :QM T0547 356 :PKLIDE 1kjqA 241 :PLALER Number of specific fragments extracted= 2 number of extra gaps= 1 total=42343 # 1ucdA.353.55 read from T0547.t2k.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)N355 (1ucdA)I58 because G (3-10) conformation "forbidden" or filtered. T0547 353 :KQ 1ucdA 56 :TK T0547 356 :PKLIDE 1ucdA 59 :SHLQSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=42345 # 1jakA.353.370 read from T0547.t2k.many.frag # found chain 1jakA in training set T0547 353 :KQNPKLIDE 1jakA 365 :RTGDAEKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42346 # 1ijbA.353.156 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 353 :KQNPKLIDE 1ijbA 656 :HANLKQIRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42347 # 1t3tA.353.53 read from T0547.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)K353 (1t3tA)P46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1t3tA)N48 because P (beta_P) conformation "forbidden" or filtered. T0547 354 :Q 1t3tA 47 :L T0547 356 :PKLIDE 1t3tA 49 :DSEQAQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=42349 # 1q5zA.354.66 read from T0547.t2k.many.frag # found chain 1q5zA in training set T0547 354 :QNPKLIDEL 1q5zA 559 :TPFPVRRAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=42350 # 1vhvA.354.150 read from T0547.t2k.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)P356 (1vhvA)Q140 because G (3-10) conformation "forbidden" or filtered. T0547 354 :QN 1vhvA 138 :RS T0547 357 :KLIDEL 1vhvA 141 :TPVNVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=42352 # 1rloA.354.117 read from T0547.t2k.many.frag # found chain 1rloA in template set Warning: unaligning (T0547)Q354 (1rloA)A118 because P (beta_P) conformation "forbidden" or filtered. T0547 355 :NPKLIDEL 1rloA 119 :PEAFVALM Number of specific fragments extracted= 1 number of extra gaps= 1 total=42353 # 1cnv.354.199 read from T0547.t2k.many.frag # found chain 1cnv in training set T0547 354 :QNPKLIDEL 1cnv 200 :NIQRIRNAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=42354 # 1r26A.354.109 read from T0547.t2k.many.frag # found chain 1r26A in training set T0547 354 :QNPKLIDEL 1r26A 91 :NPGMLRQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42355 # 1ei7A.354.74 read from T0547.t2k.many.frag # found chain 1ei7A in template set T0547 354 :QNPKLIDEL 1ei7A 75 :VLDPLVTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42356 # 1tv8A.354.171 read from T0547.t2k.many.frag # found chain 1tv8A in template set Warning: unaligning (T0547)N355 (1tv8A)N173 because G (3-10) conformation "forbidden" or filtered. T0547 354 :Q 1tv8A 172 :I T0547 356 :PKLIDEL 1tv8A 174 :DDQIIPM Number of specific fragments extracted= 2 number of extra gaps= 1 total=42358 # 1ll2A.354.42 read from T0547.t2k.many.frag # found chain 1ll2A in template set T0547 354 :QNPKLIDEL 1ll2A 43 :VSDTMRKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42359 # 1w9zA.354.202 read from T0547.t2k.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)P356 (1w9zA)C205 because Y (epsilon') conformation "forbidden" or filtered. T0547 354 :QN 1w9zA 203 :TS T0547 357 :KLIDEL 1w9zA 206 :ASLTAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=42361 # 1g61A.354.212 read from T0547.t2k.many.frag # found chain 1g61A in training set Warning: unaligning (T0547)N355 (1g61A)T2214 because P (beta_P) conformation "forbidden" or filtered. T0547 354 :Q 1g61A 2213 :T T0547 356 :PKLIDEL 1g61A 2215 :GPELLII Number of specific fragments extracted= 2 number of extra gaps= 1 total=42363 # 1s2oA.354.124 read from T0547.t2k.many.frag # found chain 1s2oA in training set Warning: unaligning (T0547)Q354 (1s2oA)A125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1s2oA)C126 because P (beta_P) conformation "forbidden" or filtered. T0547 356 :PKLIDEL 1s2oA 127 :PTVIDQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=42364 # 1a8d.354.232 read from T0547.t2k.many.frag # found chain 1a8d in training set T0547 354 :QNPKLIDEL 1a8d 233 :LNPKEIEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42365 # 1f8vA.354.330 read from T0547.t2k.many.frag # found chain 1f8vA in template set T0547 354 :QNPKLIDEL 1f8vA 337 :FDPLALECY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42366 # 1ucdA.354.56 read from T0547.t2k.many.frag # found chain 1ucdA in training set T0547 354 :QNPKLIDEL 1ucdA 57 :KISHLQSQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42367 # 1zr6A.354.331 read from T0547.t2k.many.frag # found chain 1zr6A in training set T0547 354 :QNPKLIDEL 1zr6A 326 :LSDEAIQAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=42368 # 1bupA.354.149 read from T0547.t2k.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)N355 (1bupA)N151 because P (beta_P) conformation "forbidden" or filtered. T0547 354 :Q 1bupA 150 :F T0547 356 :PKLIDEL 1bupA 152 :DSQRQAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=42370 # 1rtqA.354.196 read from T0547.t2k.many.frag # found chain 1rtqA in training set T0547 354 :QNPKLIDEL 1rtqA 197 :TDSNFTQYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42371 # 1vjvA.354.183 read from T0547.t2k.many.frag # found chain 1vjvA in training set Warning: unaligning (T0547)P356 (1vjvA)N270 because G (3-10) conformation "forbidden" or filtered. T0547 354 :QN 1vjvA 268 :TT T0547 357 :KLIDEL 1vjvA 271 :FMRNGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=42373 # 1rwhA.354.146 read from T0547.t2k.many.frag # found chain 1rwhA in training set Warning: unaligning (T0547)Q354 (1rwhA)L147 because P (beta_P) conformation "forbidden" or filtered. T0547 355 :NPKLIDEL 1rwhA 148 :SAAERTAY Number of specific fragments extracted= 1 number of extra gaps= 1 total=42374 # 2bmoA.354.333 read from T0547.t2k.many.frag # found chain 2bmoA in training set T0547 354 :QNPKLIDEL 2bmoA 334 :MPEDLKRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42375 # 1tl9A.354.204 read from T0547.t2k.many.frag # found chain 1tl9A in template set T0547 354 :QNPKLIDEL 1tl9A 230 :APSDLYQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=42376 # 1vs0A.354.233 read from T0547.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)Q354 (1vs0A)L683 because Y (epsilon') conformation "forbidden" or filtered. T0547 355 :NPKLIDEL 1vs0A 684 :SERELANL Number of specific fragments extracted= 1 number of extra gaps= 1 total=42377 # 1mtyB.354.303 read from T0547.t2k.many.frag # found chain 1mtyB in training set T0547 354 :QNPKLIDEL 1mtyB 309 :FSDYNRTVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=42378 # 2a14A.354.85 read from T0547.t2k.many.frag # found chain 2a14A in training set T0547 354 :QNPKLIDEL 2a14A 86 :FTDRNREEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42379 # 1tqhA.354.229 read from T0547.t2k.many.frag # found chain 1tqhA in training set T0547 354 :QNPKLIDEL 1tqhA 230 :EKDQLHEDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42380 # 1h32A.354.153 read from T0547.t2k.many.frag # found chain 1h32A in training set T0547 354 :QNPKLIDEL 1h32A 154 :PAQSTWEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=42381 # 1gmlA.354.87 read from T0547.t2k.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)N355 (1gmlA)S297 because P (beta_P) conformation "forbidden" or filtered. T0547 354 :Q 1gmlA 296 :I T0547 356 :PKLIDEL 1gmlA 298 :DLAQHYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=42383 # 1ijbA.354.157 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 354 :QNPKLIDEL 1ijbA 657 :ANLKQIRLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42384 # 1qz8A.354.93 read from T0547.t2k.many.frag # found chain 1qz8A in template set T0547 354 :QNPKLIDEL 1qz8A 94 :LNNLNRGMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42385 1uzbA expands to /projects/compbio/data/pdb/1uzb.pdb.gz 1uzbA:Skipped atom 202, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 203, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 204, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 205, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 206, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 207, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 1060, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 1061, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 1082, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 1277, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2270, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2271, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2272, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2273, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2274, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2275, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2276, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2293, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2294, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2295, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2296, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2540, because occupancy 0.300 <= existing 0.700 in 1uzbA Skipped atom 2651, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2887, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2888, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2889, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 2890, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 3980, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 3981, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 3982, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 3983, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 3984, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 3985, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 4057, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 4058, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 4059, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 4060, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 4061, because occupancy 0.500 <= existing 0.500 in 1uzbA Skipped atom 4062, because occupancy 0.500 <= existing 0.500 in 1uzbA # 1uzbA.354.333 read from T0547.t2k.many.frag # adding 1uzbA to template set # found chain 1uzbA in template set T0547 354 :QNPKLIDEL 1uzbA 334 :AYEPVLERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42386 # 1q5zA.355.67 read from T0547.t2k.many.frag # found chain 1q5zA in training set Warning: unaligning (T0547)N355 (1q5zA)P560 because P (beta_P) conformation "forbidden" or filtered. T0547 356 :PKLIDELY 1q5zA 561 :FPVRRAFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=42387 # 1cnv.355.200 read from T0547.t2k.many.frag # found chain 1cnv in training set T0547 355 :NPKLIDELY 1cnv 201 :IQRIRNAWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42388 # 1r26A.355.110 read from T0547.t2k.many.frag # found chain 1r26A in training set T0547 355 :NPKLIDELY 1r26A 92 :PGMLRQKLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42389 # 1w9zA.355.203 read from T0547.t2k.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)P356 (1w9zA)C205 because Y (epsilon') conformation "forbidden" or filtered. T0547 355 :N 1w9zA 204 :S T0547 357 :KLIDELY 1w9zA 206 :ASLTAMT Number of specific fragments extracted= 2 number of extra gaps= 1 total=42391 # 1vhvA.355.151 read from T0547.t2k.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)P356 (1vhvA)Q140 because G (3-10) conformation "forbidden" or filtered. T0547 355 :N 1vhvA 139 :S T0547 357 :KLIDELY 1vhvA 141 :TPVNVIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=42393 # 1f8vA.355.331 read from T0547.t2k.many.frag # found chain 1f8vA in template set T0547 355 :NPKLIDELY 1f8vA 338 :DPLALECYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=42394 # 1ucdA.355.57 read from T0547.t2k.many.frag # found chain 1ucdA in training set T0547 355 :NPKLIDELY 1ucdA 58 :ISHLQSQLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42395 # 1a8d.355.233 read from T0547.t2k.many.frag # found chain 1a8d in training set T0547 355 :NPKLIDELY 1a8d 234 :NPKEIEKLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42396 # 1rloA.355.118 read from T0547.t2k.many.frag # found chain 1rloA in template set T0547 355 :NPKLIDELY 1rloA 119 :PEAFVALMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42397 # 1ll2A.355.43 read from T0547.t2k.many.frag # found chain 1ll2A in template set T0547 355 :NPKLIDELY 1ll2A 44 :SDTMRKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42398 # 1zr6A.355.332 read from T0547.t2k.many.frag # found chain 1zr6A in training set Warning: unaligning (T0547)N355 (1zr6A)S327 because P (beta_P) conformation "forbidden" or filtered. T0547 356 :PKLIDELY 1zr6A 328 :DEAIQAFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=42399 # 1ei7A.355.75 read from T0547.t2k.many.frag # found chain 1ei7A in template set T0547 355 :NPKLIDELY 1ei7A 76 :LDPLVTALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42400 # 2a14A.355.86 read from T0547.t2k.many.frag # found chain 2a14A in training set T0547 355 :NPKLIDELY 2a14A 87 :TDRNREELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42401 # 1tv8A.355.172 read from T0547.t2k.many.frag # found chain 1tv8A in template set T0547 355 :NPKLIDELY 1tv8A 173 :NDDQIIPML Number of specific fragments extracted= 1 number of extra gaps= 0 total=42402 # 1s2oA.355.125 read from T0547.t2k.many.frag # found chain 1s2oA in training set Warning: unaligning (T0547)N355 (1s2oA)C126 because P (beta_P) conformation "forbidden" or filtered. T0547 356 :PKLIDELY 1s2oA 127 :PTVIDQLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=42403 # 1tqhA.355.230 read from T0547.t2k.many.frag # found chain 1tqhA in training set T0547 355 :NPKLIDELY 1tqhA 231 :KDQLHEDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42404 # 1g61A.355.213 read from T0547.t2k.many.frag # found chain 1g61A in training set T0547 355 :NPKLIDELY 1g61A 2214 :TGPELLIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42405 # 1rwhA.355.147 read from T0547.t2k.many.frag # found chain 1rwhA in training set T0547 355 :NPKLIDELY 1rwhA 148 :SAAERTAYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=42406 # 1h32A.355.154 read from T0547.t2k.many.frag # found chain 1h32A in training set T0547 355 :NPKLIDELY 1h32A 155 :AQSTWEKGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42407 # 1bupA.355.150 read from T0547.t2k.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)N355 (1bupA)N151 because P (beta_P) conformation "forbidden" or filtered. T0547 356 :PKLIDELY 1bupA 152 :DSQRQATK Number of specific fragments extracted= 1 number of extra gaps= 1 total=42408 # 1mtyB.355.304 read from T0547.t2k.many.frag # found chain 1mtyB in training set T0547 355 :NPKLIDELY 1mtyB 310 :SDYNRTVMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42409 # 1ijbA.355.158 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 355 :NPKLIDELY 1ijbA 658 :NLKQIRLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42410 # 1nuyA.355.215 read from T0547.t2k.many.frag # found chain 1nuyA in training set T0547 355 :NPKLIDELY 1nuyA 1216 :AKEFDPAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=42411 # 1uzbA.355.334 read from T0547.t2k.many.frag # found chain 1uzbA in template set T0547 355 :NPKLIDELY 1uzbA 335 :YEPVLERVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42412 # 1gmlA.355.88 read from T0547.t2k.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)N355 (1gmlA)S297 because P (beta_P) conformation "forbidden" or filtered. T0547 356 :PKLIDELY 1gmlA 298 :DLAQHYLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=42413 # 1tl9A.355.205 read from T0547.t2k.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)K357 (1tl9A)D233 because G (3-10) conformation "forbidden" or filtered. T0547 355 :NP 1tl9A 231 :PS T0547 358 :LIDELY 1tl9A 234 :LYQIIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=42415 # 1rtqA.355.197 read from T0547.t2k.many.frag # found chain 1rtqA in training set T0547 355 :NPKLIDELY 1rtqA 198 :DSNFTQYLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=42416 # 1uf3A.355.164 read from T0547.t2k.many.frag # found chain 1uf3A in template set T0547 355 :NPKLIDELY 1uf3A 165 :NEQGSHEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42417 # 1w2yA.355.125 read from T0547.t2k.many.frag # found chain 1w2yA in training set T0547 355 :NPKLIDELY 1w2yA 126 :IYGILNDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42418 # 1vs0A.355.234 read from T0547.t2k.many.frag # found chain 1vs0A in template set T0547 355 :NPKLIDELY 1vs0A 684 :SERELANLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42419 # 1q5zA.356.68 read from T0547.t2k.many.frag # found chain 1q5zA in training set T0547 356 :PKLIDELYD 1q5zA 561 :FPVRRAFDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=42420 # 1cnv.356.201 read from T0547.t2k.many.frag # found chain 1cnv in training set T0547 356 :PKLIDELYD 1cnv 202 :QRIRNAWLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=42421 # 1w9zA.356.204 read from T0547.t2k.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)P356 (1w9zA)C205 because Y (epsilon') conformation "forbidden" or filtered. T0547 357 :KLIDELYD 1w9zA 206 :ASLTAMTN Number of specific fragments extracted= 1 number of extra gaps= 1 total=42422 # 1a8d.356.234 read from T0547.t2k.many.frag # found chain 1a8d in training set T0547 356 :PKLIDELYD 1a8d 235 :PKEIEKLYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=42423 # 1r26A.356.111 read from T0547.t2k.many.frag # found chain 1r26A in training set T0547 356 :PKLIDELYD 1r26A 93 :GMLRQKLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42424 # 1rwhA.356.148 read from T0547.t2k.many.frag # found chain 1rwhA in training set T0547 356 :PKLIDELYD 1rwhA 149 :AAERTAYCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42425 # 2a14A.356.87 read from T0547.t2k.many.frag # found chain 2a14A in training set T0547 356 :PKLIDELYD 2a14A 88 :DRNREELEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42426 # 1ucdA.356.58 read from T0547.t2k.many.frag # found chain 1ucdA in training set T0547 356 :PKLIDELYD 1ucdA 59 :SHLQSQLNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=42427 # 1f8vA.356.332 read from T0547.t2k.many.frag # found chain 1f8vA in template set T0547 356 :PKLIDELYD 1f8vA 339 :PLALECYHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42428 # 1ll2A.356.44 read from T0547.t2k.many.frag # found chain 1ll2A in template set T0547 356 :PKLIDELYD 1ll2A 45 :DTMRKALEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42429 # 1vhvA.356.152 read from T0547.t2k.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)P356 (1vhvA)Q140 because G (3-10) conformation "forbidden" or filtered. T0547 357 :KLIDELYD 1vhvA 141 :TPVNVIKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=42430 # 1rloA.356.119 read from T0547.t2k.many.frag # found chain 1rloA in template set T0547 356 :PKLIDELYD 1rloA 120 :EAFVALMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42431 # 1s2oA.356.126 read from T0547.t2k.many.frag # found chain 1s2oA in training set T0547 356 :PKLIDELYD 1s2oA 127 :PTVIDQLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42432 # 1ei7A.356.76 read from T0547.t2k.many.frag # found chain 1ei7A in template set T0547 356 :PKLIDELYD 1ei7A 77 :DPLVTALLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=42433 # 1zr6A.356.333 read from T0547.t2k.many.frag # found chain 1zr6A in training set T0547 356 :PKLIDELYD 1zr6A 328 :DEAIQAFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42434 # 1tv8A.356.173 read from T0547.t2k.many.frag # found chain 1tv8A in template set T0547 356 :PKLIDELYD 1tv8A 174 :DDQIIPMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42435 # 1tx4A.356.53 read from T0547.t2k.many.frag # found chain 1tx4A in training set T0547 356 :PKLIDELYD 1tx4A 90 :TQVVREVQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=42436 # 1g61A.356.214 read from T0547.t2k.many.frag # found chain 1g61A in training set T0547 356 :PKLIDELYD 1g61A 2215 :GPELLIIED Number of specific fragments extracted= 1 number of extra gaps= 0 total=42437 # 1tqhA.356.231 read from T0547.t2k.many.frag # found chain 1tqhA in training set T0547 356 :PKLIDELYD 1tqhA 232 :DQLHEDIYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42438 # 1ijbA.356.159 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 356 :PKLIDELYD 1ijbA 659 :LKQIRLIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42439 # 1h32A.356.155 read from T0547.t2k.many.frag # found chain 1h32A in training set T0547 356 :PKLIDELYD 1h32A 156 :QSTWEKGRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42440 1nd4A expands to /projects/compbio/data/pdb/1nd4.pdb.gz 1nd4A:# 1nd4A.356.163 read from T0547.t2k.many.frag # adding 1nd4A to template set # found chain 1nd4A in template set Warning: unaligning (T0547)P356 (1nd4A)G164 because T (delta_L) conformation "forbidden" or filtered. T0547 357 :KLIDELYD 1nd4A 165 :LAPAELFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=42441 # 1tl9A.356.206 read from T0547.t2k.many.frag # found chain 1tl9A in template set T0547 356 :PKLIDELYD 1tl9A 232 :SDLYQIILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42442 # 1nuyA.356.216 read from T0547.t2k.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)K357 (1nuyA)E1218 because G (3-10) conformation "forbidden" or filtered. T0547 356 :P 1nuyA 1217 :K T0547 358 :LIDELYD 1nuyA 1219 :FDPAITE Number of specific fragments extracted= 2 number of extra gaps= 1 total=42444 # 1uf3A.356.165 read from T0547.t2k.many.frag # found chain 1uf3A in template set T0547 356 :PKLIDELYD 1uf3A 166 :EQGSHEVAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=42445 # 1mtyB.356.305 read from T0547.t2k.many.frag # found chain 1mtyB in training set T0547 356 :PKLIDELYD 1mtyB 311 :DYNRTVMRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42446 # 1gmlA.356.89 read from T0547.t2k.many.frag # found chain 1gmlA in template set T0547 356 :PKLIDELYD 1gmlA 298 :DLAQHYLMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42447 # 1to6A.356.217 read from T0547.t2k.many.frag # found chain 1to6A in template set T0547 356 :PKLIDELYD 1to6A 218 :EVVDQAIQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42448 # 1e2kA.356.288 read from T0547.t2k.many.frag # found chain 1e2kA in training set T0547 356 :PKLIDELYD 1e2kA 334 :AGCRDALLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=42449 # 1iqzA.356.47 read from T0547.t2k.many.frag # found chain 1iqzA in training set T0547 356 :PKLIDELYD 1iqzA 48 :DILIDDMMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42450 # 1q5zA.357.69 read from T0547.t2k.many.frag # found chain 1q5zA in training set T0547 357 :KLIDELYDL 1q5zA 562 :PVRRAFDGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42451 # 1w9zA.357.205 read from T0547.t2k.many.frag # found chain 1w9zA in template set T0547 357 :KLIDELYDL 1w9zA 206 :ASLTAMTNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42452 # 1a8d.357.235 read from T0547.t2k.many.frag # found chain 1a8d in training set T0547 357 :KLIDELYDL 1a8d 236 :KEIEKLYTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=42453 # 1cnv.357.202 read from T0547.t2k.many.frag # found chain 1cnv in training set T0547 357 :KLIDELYDL 1cnv 203 :RIRNAWLSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=42454 # 1ucdA.357.59 read from T0547.t2k.many.frag # found chain 1ucdA in training set T0547 357 :KLIDELYDL 1ucdA 60 :HLQSQLNTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42455 # 1f8vA.357.333 read from T0547.t2k.many.frag # found chain 1f8vA in template set T0547 357 :KLIDELYDL 1f8vA 340 :LALECYHNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42456 # 1rwhA.357.149 read from T0547.t2k.many.frag # found chain 1rwhA in training set T0547 357 :KLIDELYDL 1rwhA 150 :AERTAYCAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42457 # 1s2oA.357.127 read from T0547.t2k.many.frag # found chain 1s2oA in training set T0547 357 :KLIDELYDL 1s2oA 128 :TVIDQLTEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=42458 # 1nd4A.357.164 read from T0547.t2k.many.frag # found chain 1nd4A in template set Warning: unaligning (T0547)K357 (1nd4A)L165 because P (beta_P) conformation "forbidden" or filtered. T0547 358 :LIDELYDL 1nd4A 166 :APAELFAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=42459 # 1ei7A.357.77 read from T0547.t2k.many.frag # found chain 1ei7A in template set T0547 357 :KLIDELYDL 1ei7A 78 :PLVTALLGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42460 # 2a14A.357.88 read from T0547.t2k.many.frag # found chain 2a14A in training set T0547 357 :KLIDELYDL 2a14A 89 :RNREELEKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=42461 # 1tx4A.357.54 read from T0547.t2k.many.frag # found chain 1tx4A in training set T0547 357 :KLIDELYDL 1tx4A 91 :QVVREVQQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42462 # 1r26A.357.112 read from T0547.t2k.many.frag # found chain 1r26A in training set T0547 357 :KLIDELYDL 1r26A 94 :MLRQKLRDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42463 # 1tqhA.357.232 read from T0547.t2k.many.frag # found chain 1tqhA in training set T0547 357 :KLIDELYDL 1tqhA 233 :QLHEDIYAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=42464 # 1nuyA.357.217 read from T0547.t2k.many.frag # found chain 1nuyA in training set T0547 357 :KLIDELYDL 1nuyA 1218 :EFDPAITEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42465 # 1ijbA.357.160 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 357 :KLIDELYDL 1ijbA 660 :KQIRLIEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=42466 # 1vhvA.357.153 read from T0547.t2k.many.frag # found chain 1vhvA in template set T0547 357 :KLIDELYDL 1vhvA 141 :TPVNVIKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42467 # 1zr6A.357.334 read from T0547.t2k.many.frag # found chain 1zr6A in training set T0547 357 :KLIDELYDL 1zr6A 329 :EAIQAFVDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42468 # 1rloA.357.120 read from T0547.t2k.many.frag # found chain 1rloA in template set T0547 357 :KLIDELYDL 1rloA 121 :AFVALMAKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=42469 # 1tl9A.357.207 read from T0547.t2k.many.frag # found chain 1tl9A in template set T0547 357 :KLIDELYDL 1tl9A 233 :DLYQIILKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42470 # 1iqzA.357.48 read from T0547.t2k.many.frag # found chain 1iqzA in training set T0547 357 :KLIDELYDL 1iqzA 49 :ILIDDMMDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42471 # 1rkiA.357.15 read from T0547.t2k.many.frag # found chain 1rkiA in training set T0547 357 :KLIDELYDL 1rkiA 16 :IISRDLCDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=42472 # 1rp4A.357.262 read from T0547.t2k.many.frag # found chain 1rp4A in template set T0547 357 :KLIDELYDL 1rp4A 301 :EIKNKMDNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42473 # 1ll2A.357.45 read from T0547.t2k.many.frag # found chain 1ll2A in template set T0547 357 :KLIDELYDL 1ll2A 46 :TMRKALEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42474 1wa5C expands to /projects/compbio/data/pdb/1wa5.pdb.gz 1wa5C:# 1wa5C.357.286 read from T0547.t2k.many.frag # adding 1wa5C to template set # found chain 1wa5C in template set T0547 357 :KLIDELYDL 1wa5C 287 :EFIQITWNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42475 # 1ynfA.357.399 read from T0547.t2k.many.frag # found chain 1ynfA in template set T0547 357 :KLIDELYDL 1ynfA 389 :TLFNALNDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=42476 # 1tv8A.357.174 read from T0547.t2k.many.frag # found chain 1tv8A in template set T0547 357 :KLIDELYDL 1tv8A 175 :DQIIPMLEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42477 1h54A expands to /projects/compbio/data/pdb/1h54.pdb.gz 1h54A:# 1h54A.357.528 read from T0547.t2k.many.frag # adding 1h54A to template set # found chain 1h54A in template set T0547 357 :KLIDELYDL 1h54A 529 :EEKTKWQDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42478 # 1u5hA.357.211 read from T0547.t2k.many.frag # found chain 1u5hA in template set T0547 357 :KLIDELYDL 1u5hA 212 :SQIPVVRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42479 # 1uf3A.357.166 read from T0547.t2k.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)K357 (1uf3A)Q167 because G (3-10) conformation "forbidden" or filtered. T0547 358 :LIDELYDL 1uf3A 168 :GSHEVAHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=42480 # 1w9zA.358.206 read from T0547.t2k.many.frag # found chain 1w9zA in template set T0547 358 :LIDELYDLY 1w9zA 207 :SLTAMTNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42481 # 1q5zA.358.70 read from T0547.t2k.many.frag # found chain 1q5zA in training set T0547 358 :LIDELYDLY 1q5zA 563 :VRRAFDGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42482 # 1a8d.358.236 read from T0547.t2k.many.frag # found chain 1a8d in training set T0547 358 :LIDELYDLY 1a8d 237 :EIEKLYTSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42483 # 1tx4A.358.55 read from T0547.t2k.many.frag # found chain 1tx4A in training set T0547 358 :LIDELYDLY 1tx4A 92 :VVREVQQKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42484 # 1cnv.358.203 read from T0547.t2k.many.frag # found chain 1cnv in training set T0547 358 :LIDELYDLY 1cnv 204 :IRNAWLSWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=42485 # 1ucdA.358.60 read from T0547.t2k.many.frag # found chain 1ucdA in training set T0547 358 :LIDELYDLY 1ucdA 61 :LQSQLNTLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=42486 # 1nd4A.358.165 read from T0547.t2k.many.frag # found chain 1nd4A in template set T0547 358 :LIDELYDLY 1nd4A 166 :APAELFARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42487 # 1rwhA.358.150 read from T0547.t2k.many.frag # found chain 1rwhA in training set T0547 358 :LIDELYDLY 1rwhA 151 :ERTAYCAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42488 # 1s2oA.358.128 read from T0547.t2k.many.frag # found chain 1s2oA in training set T0547 358 :LIDELYDLY 1s2oA 129 :VIDQLTEML Number of specific fragments extracted= 1 number of extra gaps= 0 total=42489 # 1f8vA.358.334 read from T0547.t2k.many.frag # found chain 1f8vA in template set T0547 358 :LIDELYDLY 1f8vA 341 :ALECYHNLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42490 # 1rp4A.358.263 read from T0547.t2k.many.frag # found chain 1rp4A in template set T0547 358 :LIDELYDLY 1rp4A 302 :IKNKMDNVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42491 # 1h54A.358.529 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 358 :LIDELYDLY 1h54A 530 :EKTKWQDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42492 # 1rkiA.358.16 read from T0547.t2k.many.frag # found chain 1rkiA in training set T0547 358 :LIDELYDLY 1rkiA 17 :ISRDLCDCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42493 # 1wa5C.358.287 read from T0547.t2k.many.frag # found chain 1wa5C in template set T0547 358 :LIDELYDLY 1wa5C 288 :FIQITWNLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42494 1ckmA expands to /projects/compbio/data/pdb/1ckm.pdb.gz 1ckmA:# 1ckmA.358.163 read from T0547.t2k.many.frag # adding 1ckmA to template set # found chain 1ckmA in template set Warning: unaligning (T0547)Y366 (1ckmA)L172 because G (3-10) conformation "forbidden" or filtered. T0547 358 :LIDELYDL 1ckmA 164 :RFFAMKRS Number of specific fragments extracted= 1 number of extra gaps= 1 total=42495 # 1iqzA.358.49 read from T0547.t2k.many.frag # found chain 1iqzA in training set T0547 358 :LIDELYDLY 1iqzA 50 :LIDDMMDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=42496 # 2a14A.358.89 read from T0547.t2k.many.frag # found chain 2a14A in training set T0547 358 :LIDELYDLY 2a14A 90 :NREELEKWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42497 # 1tqhA.358.233 read from T0547.t2k.many.frag # found chain 1tqhA in training set T0547 358 :LIDELYDLY 1tqhA 234 :LHEDIYAFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42498 # 1ynfA.358.400 read from T0547.t2k.many.frag # found chain 1ynfA in template set T0547 358 :LIDELYDLY 1ynfA 390 :LFNALNDWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42499 # 1ijbA.358.161 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 358 :LIDELYDLY 1ijbA 661 :QIRLIEKQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42500 2b6cA expands to /projects/compbio/data/pdb/2b6c.pdb.gz 2b6cA:Skipped atom 38, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 42, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 44, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 46, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 48, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 50, because occupancy 0.500 <= existing 0.500 in 2b6cA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 120, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 124, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 126, because occupancy 0.500 <= existing 0.500 in 2b6cA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 329, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 333, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 335, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 337, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 339, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 341, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 344, because occupancy 0.400 <= existing 0.600 in 2b6cA Skipped atom 348, because occupancy 0.400 <= existing 0.600 in 2b6cA Skipped atom 350, because occupancy 0.400 <= existing 0.600 in 2b6cA Skipped atom 352, because occupancy 0.400 <= existing 0.600 in 2b6cA Skipped atom 354, because occupancy 0.400 <= existing 0.600 in 2b6cA Skipped atom 356, because occupancy 0.400 <= existing 0.600 in 2b6cA Skipped atom 526, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 530, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 532, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 534, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 537, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 541, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 543, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 545, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 547, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 549, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 654, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 660, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 662, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 664, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 666, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 729, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 733, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 735, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 737, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 739, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 741, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1026, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1030, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1032, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 2b6cA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1282, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1286, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1288, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1290, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1292, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1294, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1535, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1539, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1541, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1669, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1673, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1675, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1677, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1679, because occupancy 0.500 <= existing 0.500 in 2b6cA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1699, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1703, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1705, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1707, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1709, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1711, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1796, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1800, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1802, because occupancy 0.500 <= existing 0.500 in 2b6cA # 2b6cA.358.123 read from T0547.t2k.many.frag # adding 2b6cA to template set # found chain 2b6cA in template set T0547 358 :LIDELYDLY 2b6cA 121 :ELPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=42501 # 1nuyA.358.218 read from T0547.t2k.many.frag # found chain 1nuyA in training set T0547 358 :LIDELYDLY 1nuyA 1219 :FDPAITEYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42502 # 1whsA.358.208 read from T0547.t2k.many.frag # found chain 1whsA in template set T0547 358 :LIDELYDLY 1whsA 202 :TYRRLKEAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=42503 1pprM expands to /projects/compbio/data/pdb/1ppr.pdb.gz 1pprM:# 1pprM.358.102 read from T0547.t2k.many.frag # adding 1pprM to template set # found chain 1pprM in template set T0547 358 :LIDELYDLY 1pprM 103 :MVMDVYDSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42504 # 1tv8A.358.175 read from T0547.t2k.many.frag # found chain 1tv8A in template set T0547 358 :LIDELYDLY 1tv8A 176 :QIIPMLEYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=42505 # 1z7xW.358.385 read from T0547.t2k.many.frag # found chain 1z7xW in template set T0547 358 :LIDELYDLY 1z7xW 385 :SCSSLAATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42506 1ash expands to /projects/compbio/data/pdb/1ash.pdb.gz 1ash:Warning: there is no chain 1ash will retry with 1ashA # 1ash.358.3 read from T0547.t2k.many.frag # adding 1ash to template set # found chain 1ash in template set T0547 358 :LIDELYDLY 1ash 3 :TRELCMKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42507 1bdfA expands to /projects/compbio/data/pdb/1bdf.pdb.gz 1bdfA:# 1bdfA.358.38 read from T0547.t2k.many.frag # adding 1bdfA to template set # found chain 1bdfA in template set T0547 358 :LIDELYDLY 1bdfA 39 :LGNALRAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42508 # 1ei7A.358.78 read from T0547.t2k.many.frag # found chain 1ei7A in template set T0547 358 :LIDELYDLY 1ei7A 79 :LVTALLGAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=42509 # 1to6A.358.219 read from T0547.t2k.many.frag # found chain 1to6A in template set T0547 358 :LIDELYDLY 1to6A 220 :VDQAIQDFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42510 # 1w9zA.359.207 read from T0547.t2k.many.frag # found chain 1w9zA in template set T0547 359 :IDELYDLYK 1w9zA 208 :LTAMTNLVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42511 # 1q5zA.359.71 read from T0547.t2k.many.frag # found chain 1q5zA in training set T0547 359 :IDELYDLYK 1q5zA 564 :RRAFDGLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42512 # 1a8d.359.237 read from T0547.t2k.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)K367 (1a8d)L246 because N (gamma') conformation "forbidden" or filtered. T0547 359 :IDELYDLY 1a8d 238 :IEKLYTSY Number of specific fragments extracted= 1 number of extra gaps= 1 total=42513 # 1ucdA.359.61 read from T0547.t2k.many.frag # found chain 1ucdA in training set T0547 359 :IDELYDLYK 1ucdA 62 :QSQLNTLWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42514 # 1tx4A.359.56 read from T0547.t2k.many.frag # found chain 1tx4A in training set T0547 359 :IDELYDLYK 1tx4A 93 :VREVQQKYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42515 # 1rp4A.359.264 read from T0547.t2k.many.frag # found chain 1rp4A in template set T0547 359 :IDELYDLYK 1rp4A 303 :KNKMDNVIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=42516 # 1cnv.359.204 read from T0547.t2k.many.frag # found chain 1cnv in training set T0547 359 :IDELYDLYK 1cnv 205 :RNAWLSWTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42517 # 1nd4A.359.166 read from T0547.t2k.many.frag # found chain 1nd4A in template set T0547 359 :IDELYDLYK 1nd4A 167 :PAELFARLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42518 # 1s2oA.359.129 read from T0547.t2k.many.frag # found chain 1s2oA in training set T0547 359 :IDELYDLYK 1s2oA 130 :IDQLTEMLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42519 # 1ckmA.359.164 read from T0547.t2k.many.frag # found chain 1ckmA in template set T0547 359 :IDELYDLYK 1ckmA 165 :FFAMKRSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42520 # 1ash.359.4 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 359 :IDELYDLYK 1ash 4 :RELCMKSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42521 # 1wa5C.359.288 read from T0547.t2k.many.frag # found chain 1wa5C in template set T0547 359 :IDELYDLYK 1wa5C 289 :IQITWNLLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=42522 # 1rwhA.359.151 read from T0547.t2k.many.frag # found chain 1rwhA in training set T0547 359 :IDELYDLYK 1rwhA 152 :RTAYCAAID Number of specific fragments extracted= 1 number of extra gaps= 0 total=42523 # 1f8vA.359.335 read from T0547.t2k.many.frag # found chain 1f8vA in template set T0547 359 :IDELYDLYK 1f8vA 342 :LECYHNLKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=42524 # 1rkiA.359.17 read from T0547.t2k.many.frag # found chain 1rkiA in training set T0547 359 :IDELYDLYK 1rkiA 18 :SRDLCDCIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42525 # 1h54A.359.530 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 359 :IDELYDLYK 1h54A 531 :KTKWQDIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42526 # 1ijbA.359.162 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 359 :IDELYDLYK 1ijbA 662 :IRLIEKQAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42527 # 1iqzA.359.50 read from T0547.t2k.many.frag # found chain 1iqzA in training set T0547 359 :IDELYDLYK 1iqzA 51 :IDDMMDAFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42528 # 2fokA.359.390 read from T0547.t2k.many.frag # found chain 2fokA in template set T0547 359 :IDELYDLYK 2fokA 391 :EEKKSELRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=42529 1lfb expands to /projects/compbio/data/pdb/1lfb.pdb.gz 1lfb:Warning: there is no chain 1lfb will retry with 1lfbA # 1lfb.359.20 read from T0547.t2k.many.frag # adding 1lfb to template set # found chain 1lfb in template set T0547 359 :IDELYDLYK 1lfb 21 :QQILFQAYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42530 # 2d0oA.359.280 read from T0547.t2k.many.frag # found chain 2d0oA in template set T0547 359 :IDELYDLYK 2d0oA 281 :AEAIMKAVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42531 # 2a14A.359.90 read from T0547.t2k.many.frag # found chain 2a14A in training set T0547 359 :IDELYDLYK 2a14A 91 :REELEKWLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42532 # 1ynfA.359.401 read from T0547.t2k.many.frag # found chain 1ynfA in template set T0547 359 :IDELYDLYK 1ynfA 391 :FNALNDWVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42533 # 1uzbA.359.338 read from T0547.t2k.many.frag # found chain 1uzbA in template set T0547 359 :IDELYDLYK 1uzbA 339 :LERVLKRAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42534 # 1vmhA.359.72 read from T0547.t2k.many.frag # found chain 1vmhA in training set T0547 359 :IDELYDLYK 1vmhA 61 :RDILVNLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42535 # 1z7xW.359.386 read from T0547.t2k.many.frag # found chain 1z7xW in template set T0547 359 :IDELYDLYK 1z7xW 386 :CSSLAATLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42536 # 1ecrA.359.66 read from T0547.t2k.many.frag # found chain 1ecrA in template set T0547 359 :IDELYDLYK 1ecrA 67 :QSLALRHFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42537 # 1whsA.359.209 read from T0547.t2k.many.frag # found chain 1whsA in template set T0547 359 :IDELYDLYK 1whsA 203 :YRRLKEACL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42538 # 2b6cA.359.124 read from T0547.t2k.many.frag # found chain 2b6cA in template set T0547 359 :IDELYDLYK 2b6cA 122 :LPTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42539 # 1tqhA.359.234 read from T0547.t2k.many.frag # found chain 1tqhA in training set T0547 359 :IDELYDLYK 1tqhA 235 :HEDIYAFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42540 # 1w9zA.360.208 read from T0547.t2k.many.frag # found chain 1w9zA in template set T0547 360 :DELYDLYKS 1w9zA 209 :TAMTNLVNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=42541 # 1q5zA.360.72 read from T0547.t2k.many.frag # found chain 1q5zA in training set T0547 360 :DELYDLYKS 1q5zA 565 :RAFDGLRAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42542 # 1ucdA.360.62 read from T0547.t2k.many.frag # found chain 1ucdA in training set T0547 360 :DELYDLYKS 1ucdA 63 :SQLNTLWPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42543 # 1tx4A.360.57 read from T0547.t2k.many.frag # found chain 1tx4A in training set T0547 360 :DELYDLYKS 1tx4A 94 :REVQQKYNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=42544 # 1rp4A.360.265 read from T0547.t2k.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)S368 (1rp4A)Q312 because G (3-10) conformation "forbidden" or filtered. T0547 360 :DELYDLYK 1rp4A 304 :NKMDNVIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=42545 # 1a8d.360.238 read from T0547.t2k.many.frag # found chain 1a8d in training set T0547 360 :DELYDLYKS 1a8d 239 :EKLYTSYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=42546 # 1ash.360.5 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 360 :DELYDLYKS 1ash 5 :ELCMKSLEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=42547 # 1h54A.360.531 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 360 :DELYDLYKS 1h54A 532 :TKWQDIVDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42548 # 1ckmA.360.165 read from T0547.t2k.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)S368 (1ckmA)E174 because G (3-10) conformation "forbidden" or filtered. T0547 360 :DELYDLYK 1ckmA 166 :FAMKRSLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=42549 # 2fokA.360.391 read from T0547.t2k.many.frag # found chain 2fokA in template set T0547 360 :DELYDLYKS 2fokA 392 :EKKSELRHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42550 # 1wa5C.360.289 read from T0547.t2k.many.frag # found chain 1wa5C in template set T0547 360 :DELYDLYKS 1wa5C 290 :QITWNLLTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=42551 # 1cnv.360.205 read from T0547.t2k.many.frag # found chain 1cnv in training set T0547 360 :DELYDLYKS 1cnv 206 :NAWLSWTKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=42552 # 1rkiA.360.18 read from T0547.t2k.many.frag # found chain 1rkiA in training set T0547 360 :DELYDLYKS 1rkiA 19 :RDLCDCIYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42553 # 1lfb.360.21 read from T0547.t2k.many.frag # found chain 1lfb in template set T0547 360 :DELYDLYKS 1lfb 22 :QILFQAYER Number of specific fragments extracted= 1 number of extra gaps= 0 total=42554 # 1s2oA.360.130 read from T0547.t2k.many.frag # found chain 1s2oA in training set T0547 360 :DELYDLYKS 1s2oA 131 :DQLTEMLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42555 # 1whsA.360.210 read from T0547.t2k.many.frag # found chain 1whsA in template set T0547 360 :DELYDLYKS 1whsA 204 :RRLKEACLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=42556 # 1jmkC.360.125 read from T0547.t2k.many.frag # found chain 1jmkC in training set Warning: unaligning (T0547)Y366 (1jmkC)N133 because G (3-10) conformation "forbidden" or filtered. T0547 360 :DELYDL 1jmkC 127 :EALMNV T0547 367 :KS 1jmkC 134 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=42558 # 1rwhA.360.152 read from T0547.t2k.many.frag # found chain 1rwhA in training set T0547 360 :DELYDLYKS 1rwhA 153 :TAYCAAIDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=42559 # 1ecrA.360.67 read from T0547.t2k.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)K367 (1ecrA)R75 because G (3-10) conformation "forbidden" or filtered. T0547 360 :DELYDLY 1ecrA 68 :SLALRHF T0547 368 :S 1ecrA 76 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=42561 # 2d0oA.360.281 read from T0547.t2k.many.frag # found chain 2d0oA in template set T0547 360 :DELYDLYKS 2d0oA 282 :EAIMKAVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=42562 # 1vmhA.360.73 read from T0547.t2k.many.frag # found chain 1vmhA in training set T0547 360 :DELYDLYKS 1vmhA 62 :DILVNLDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42563 # 1pprM.360.104 read from T0547.t2k.many.frag # found chain 1pprM in template set T0547 360 :DELYDLYKS 1pprM 105 :MDVYDSVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42564 # 1iqzA.360.51 read from T0547.t2k.many.frag # found chain 1iqzA in training set T0547 360 :DELYDLYKS 1iqzA 52 :DDMMDAFEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=42565 # 1f8vA.360.336 read from T0547.t2k.many.frag # found chain 1f8vA in template set T0547 360 :DELYDLYKS 1f8vA 343 :ECYHNLKMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42566 # 1nd4A.360.167 read from T0547.t2k.many.frag # found chain 1nd4A in template set T0547 360 :DELYDLYKS 1nd4A 168 :AELFARLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42567 2d2mC expands to /projects/compbio/data/pdb/2d2m.pdb.gz 2d2mC:# 2d2mC.360.9 read from T0547.t2k.many.frag # adding 2d2mC to template set # found chain 2d2mC in template set T0547 360 :DELYDLYKS 2d2mC 10 :ANVMHNWDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42568 # 1ijbA.360.163 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 360 :DELYDLYKS 1ijbA 663 :RLIEKQAPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42569 # 1fiqB.360.90 read from T0547.t2k.many.frag # found chain 1fiqB in template set T0547 360 :DELYDLYKS 1fiqB 310 :KTLLEAVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42570 # 1mixA.360.82 read from T0547.t2k.many.frag # found chain 1mixA in training set T0547 360 :DELYDLYKS 1mixA 277 :RKIFMAHKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42571 # 1z7xW.360.387 read from T0547.t2k.many.frag # found chain 1z7xW in template set T0547 360 :DELYDLYKS 1z7xW 387 :SSLAATLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42572 # 1w9zA.361.209 read from T0547.t2k.many.frag # found chain 1w9zA in template set T0547 361 :ELYDLYKSI 1w9zA 210 :AMTNLVNSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42573 # 1ucdA.361.63 read from T0547.t2k.many.frag # found chain 1ucdA in training set T0547 361 :ELYDLYKSI 1ucdA 64 :QLNTLWPNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42574 # 1ash.361.6 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 361 :ELYDLYKSI 1ash 6 :LCMKSLEHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42575 # 1q5zA.361.73 read from T0547.t2k.many.frag # found chain 1q5zA in training set T0547 361 :ELYDLYKSI 1q5zA 566 :AFDGLRAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42576 # 2fokA.361.392 read from T0547.t2k.many.frag # found chain 2fokA in template set T0547 361 :ELYDLYKSI 2fokA 393 :KKSELRHKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42577 # 1rp4A.361.266 read from T0547.t2k.many.frag # found chain 1rp4A in template set T0547 361 :ELYDLYKSI 1rp4A 305 :KMDNVISQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42578 # 1tx4A.361.58 read from T0547.t2k.many.frag # found chain 1tx4A in training set Warning: unaligning (T0547)I369 (1tx4A)G103 because L (left) conformation "forbidden" or filtered. T0547 361 :ELYDLYKS 1tx4A 95 :EVQQKYNM Number of specific fragments extracted= 1 number of extra gaps= 1 total=42579 # 1h54A.361.532 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 361 :ELYDLYKSI 1h54A 533 :KWQDIVDRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=42580 # 1ckmA.361.166 read from T0547.t2k.many.frag # found chain 1ckmA in template set T0547 361 :ELYDLYKSI 1ckmA 167 :AMKRSLKEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=42581 # 1rkiA.361.19 read from T0547.t2k.many.frag # found chain 1rkiA in training set T0547 361 :ELYDLYKSI 1rkiA 20 :DLCDCIYYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42582 # 1wa5C.361.290 read from T0547.t2k.many.frag # found chain 1wa5C in template set T0547 361 :ELYDLYKSI 1wa5C 291 :ITWNLLTSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42583 # 1uzbA.361.340 read from T0547.t2k.many.frag # found chain 1uzbA in template set T0547 361 :ELYDLYKSI 1uzbA 341 :RVLKRAERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42584 # 1jmkC.361.126 read from T0547.t2k.many.frag # found chain 1jmkC in training set T0547 361 :ELYDLYKSI 1jmkC 128 :ALMNVNRDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42585 # 1lfb.361.22 read from T0547.t2k.many.frag # found chain 1lfb in template set T0547 361 :ELYDLYKSI 1lfb 23 :ILFQAYERQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=42586 # 1a8d.361.239 read from T0547.t2k.many.frag # found chain 1a8d in training set T0547 361 :ELYDLYKSI 1a8d 240 :KLYTSYLSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42587 # 2d2mC.361.10 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 361 :ELYDLYKSI 2d2mC 11 :NVMHNWDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42588 # 1mixA.361.83 read from T0547.t2k.many.frag # found chain 1mixA in training set T0547 361 :ELYDLYKSI 1mixA 278 :KIFMAHKNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=42589 # 1f7lA.361.32 read from T0547.t2k.many.frag # found chain 1f7lA in training set T0547 361 :ELYDLYKSI 1f7lA 33 :SELDQYYEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42590 # 2d0oA.361.282 read from T0547.t2k.many.frag # found chain 2d0oA in template set T0547 361 :ELYDLYKSI 2d0oA 283 :AIMKAVDGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=42591 # 1whsA.361.211 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)Y366 (1whsA)C210 because G (3-10) conformation "forbidden" or filtered. T0547 361 :ELYDL 1whsA 205 :RLKEA T0547 367 :KSI 1whsA 211 :LHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=42593 # 1cnv.361.206 read from T0547.t2k.many.frag # found chain 1cnv in training set T0547 361 :ELYDLYKSI 1cnv 207 :AWLSWTKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42594 # 1n3lA.361.131 read from T0547.t2k.many.frag # found chain 1n3lA in training set T0547 361 :ELYDLYKSI 1n3lA 132 :DVYRLSSVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42595 1lj2A expands to /projects/compbio/data/pdb/1lj2.pdb.gz 1lj2A:# 1lj2A.361.55 read from T0547.t2k.many.frag # adding 1lj2A to template set # found chain 1lj2A in template set T0547 361 :ELYDLYKSI 1lj2A 261 :DIEQQINSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42596 # 1i60A.361.155 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 361 :ELYDLYKSI 1i60A 156 :QAYEIVNTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42597 # 1s2oA.361.131 read from T0547.t2k.many.frag # found chain 1s2oA in training set T0547 361 :ELYDLYKSI 1s2oA 132 :QLTEMLKET Number of specific fragments extracted= 1 number of extra gaps= 0 total=42598 # 2c1vA.361.12 read from T0547.t2k.many.frag # found chain 2c1vA in training set Warning: unaligning (T0547)K367 (2c1vA)E19 because Y (epsilon') conformation "forbidden" or filtered. T0547 361 :ELYDLY 2c1vA 13 :EAKGVF T0547 368 :SI 2c1vA 20 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=42600 # 1rwhA.361.153 read from T0547.t2k.many.frag # found chain 1rwhA in training set T0547 361 :ELYDLYKSI 1rwhA 154 :AYCAAIDHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=42601 # 1f8vA.361.337 read from T0547.t2k.many.frag # found chain 1f8vA in template set Warning: unaligning (T0547)S368 (1f8vA)R351 because G (3-10) conformation "forbidden" or filtered. T0547 361 :ELYDLYK 1f8vA 344 :CYHNLKM T0547 369 :I 1f8vA 352 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=42603 # 1o9iA.361.190 read from T0547.t2k.many.frag # found chain 1o9iA in training set T0547 361 :ELYDLYKSI 1o9iA 191 :ELEEKYGII Number of specific fragments extracted= 1 number of extra gaps= 0 total=42604 1hbkA expands to /projects/compbio/data/pdb/1hbk.pdb.gz 1hbkA:Skipped atom 33, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 34, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 35, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 36, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 64, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 65, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 66, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 67, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 68, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 177, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 178, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 179, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 180, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 505, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 506, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 507, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 508, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 634, because occupancy 0.500 <= existing 0.500 in 1hbkA Skipped atom 635, because occupancy 0.500 <= existing 0.500 in 1hbkA # 1hbkA.361.59 read from T0547.t2k.many.frag # adding 1hbkA to template set # found chain 1hbkA in template set T0547 361 :EL 1hbkA 56 :KY T0547 364 :DLYKSI 1hbkA 58 :EAWKSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=42606 # 1ash.362.7 read from T0547.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0547)K370 (1ash)K15 because P (beta_P) conformation "forbidden" or filtered. T0547 362 :LYDLYKSI 1ash 7 :CMKSLEHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=42607 # 1w9zA.362.210 read from T0547.t2k.many.frag # found chain 1w9zA in template set T0547 362 :LYDLYKSIK 1w9zA 211 :MTNLVNSLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42608 # 1ucdA.362.64 read from T0547.t2k.many.frag # found chain 1ucdA in training set T0547 362 :LYDLYKSIK 1ucdA 65 :LNTLWPNVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42609 # 2fokA.362.393 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)S368 (2fokA)K400 because G (3-10) conformation "forbidden" or filtered. T0547 362 :LYDLYK 2fokA 394 :KSELRH T0547 369 :IK 2fokA 401 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=42611 # 1h54A.362.533 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 362 :LYDLYKSIK 1h54A 534 :WQDIVDRMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42612 # 1q5zA.362.74 read from T0547.t2k.many.frag # found chain 1q5zA in training set T0547 362 :LYDLYKSIK 1q5zA 567 :FDGLRAEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42613 # 1f7lA.362.33 read from T0547.t2k.many.frag # found chain 1f7lA in training set T0547 362 :LYDLYKSIK 1f7lA 34 :ELDQYYELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=42614 # 1rp4A.362.267 read from T0547.t2k.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)S368 (1rp4A)Q312 because G (3-10) conformation "forbidden" or filtered. T0547 362 :LYDLYK 1rp4A 306 :MDNVIS T0547 369 :IK 1rp4A 313 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=42616 # 1n3lA.362.132 read from T0547.t2k.many.frag # found chain 1n3lA in training set T0547 362 :LYDLYKSIK 1n3lA 133 :VYRLSSVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=42617 # 1mixA.362.84 read from T0547.t2k.many.frag # found chain 1mixA in training set T0547 362 :LYDLYKSIK 1mixA 279 :IFMAHKNCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=42618 # 1tx4A.362.59 read from T0547.t2k.many.frag # found chain 1tx4A in training set T0547 362 :LYDLYKSIK 1tx4A 96 :VQQKYNMGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42619 # 1ckmA.362.167 read from T0547.t2k.many.frag # found chain 1ckmA in template set T0547 362 :LYDLYKSIK 1ckmA 168 :MKRSLKEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42620 # 2d2mC.362.11 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 362 :LYDLYKSIK 2d2mC 12 :VMHNWDAAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=42621 # 1lfb.362.23 read from T0547.t2k.many.frag # found chain 1lfb in template set T0547 362 :LYDLYKSIK 1lfb 24 :LFQAYERQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42622 # 1hbkA.362.60 read from T0547.t2k.many.frag # found chain 1hbkA in template set T0547 362 :L 1hbkA 57 :Y T0547 364 :DLYKSIK 1hbkA 58 :EAWKSVE Number of specific fragments extracted= 2 number of extra gaps= 0 total=42624 # 1lj2A.362.56 read from T0547.t2k.many.frag # found chain 1lj2A in template set T0547 362 :LYDLYKSIK 1lj2A 262 :IEQQINSID Number of specific fragments extracted= 1 number of extra gaps= 0 total=42625 # 1cnv.362.207 read from T0547.t2k.many.frag # found chain 1cnv in training set T0547 362 :LYDLYKSIK 1cnv 208 :WLSWTKSVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42626 # 1wa5C.362.291 read from T0547.t2k.many.frag # found chain 1wa5C in template set T0547 362 :LYDLYKSIK 1wa5C 292 :TWNLLTSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=42627 # 1i60A.362.156 read from T0547.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)K370 (1i60A)N165 because L (left) conformation "forbidden" or filtered. T0547 362 :LYDLYKSI 1i60A 157 :AYEIVNTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=42628 # 1jmkC.362.127 read from T0547.t2k.many.frag # found chain 1jmkC in training set T0547 362 :LYDLYKSIK 1jmkC 129 :LMNVNRDNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42629 # 1uzbA.362.341 read from T0547.t2k.many.frag # found chain 1uzbA in template set T0547 362 :LYDLYKSIK 1uzbA 342 :VLKRAERLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=42630 # 1whsA.362.212 read from T0547.t2k.many.frag # found chain 1whsA in template set T0547 362 :LYDLYKSIK 1whsA 206 :LKEACLHDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=42631 1t3gA expands to /projects/compbio/data/pdb/1t3g.pdb.gz 1t3gA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1t3gA.362.121 read from T0547.t2k.many.frag # adding 1t3gA to template set # found chain 1t3gA in template set T0547 362 :LYDLYKSIK 1t3gA 524 :VEALKHTIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42632 # 1o9iA.362.191 read from T0547.t2k.many.frag # found chain 1o9iA in training set T0547 362 :LYDLYKSIK 1o9iA 192 :LEEKYGIIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42633 # 1vmhA.362.75 read from T0547.t2k.many.frag # found chain 1vmhA in training set T0547 362 :LYDLYKSIK 1vmhA 64 :LVNLDKVFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42634 # 1rkiA.362.20 read from T0547.t2k.many.frag # found chain 1rkiA in training set T0547 362 :LYDLYKSIK 1rkiA 21 :LCDCIYYYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42635 # 1v4sA.362.174 read from T0547.t2k.many.frag # found chain 1v4sA in template set T0547 362 :LYDLYKSIK 1v4sA 185 :LRDAIKRRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=42636 # 1a8d.362.240 read from T0547.t2k.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE in next template residue (1a8d)F250 T0547 362 :LYDLYKSI 1a8d 241 :LYTSYLSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=42637 1z7lA expands to /projects/compbio/data/pdb/1z7l.pdb.gz 1z7lA:# 1z7lA.362.171 read from T0547.t2k.many.frag # adding 1z7lA to template set # found chain 1z7lA in template set T0547 362 :LYDLYKSIK 1z7lA 787 :VASLLQSVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=42638 # 1iqzA.362.53 read from T0547.t2k.many.frag # found chain 1iqzA in training set T0547 362 :LYDLYKSIK 1iqzA 54 :MMDAFEGCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42639 # 1ash.363.8 read from T0547.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1ash 8 :MKSLEHAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=42640 # 1ucdA.363.65 read from T0547.t2k.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1ucdA 66 :NTLWPNVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=42641 # 2fokA.363.394 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)K367 (2fokA)H399 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 363 :YDLY 2fokA 395 :SELR T0547 368 :SIK 2fokA 400 :KLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=42643 # 1w9zA.363.211 read from T0547.t2k.many.frag # found chain 1w9zA in template set T0547 363 :YDLYKSIKP 1w9zA 212 :TNLVNSLVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42644 # 1h54A.363.534 read from T0547.t2k.many.frag # found chain 1h54A in template set Warning: unaligning (T0547)P371 (1h54A)L543 because D (zeta) conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1h54A 535 :QDIVDRMY Number of specific fragments extracted= 1 number of extra gaps= 1 total=42645 # 1f7lA.363.34 read from T0547.t2k.many.frag # found chain 1f7lA in training set T0547 363 :YDLYKSIKP 1f7lA 35 :LDQYYELSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42646 # 1tx4A.363.60 read from T0547.t2k.many.frag # found chain 1tx4A in training set T0547 363 :YDLYKSIKP 1tx4A 97 :QQKYNMGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42647 # 1lj2A.363.57 read from T0547.t2k.many.frag # found chain 1lj2A in template set Warning: unaligning (T0547)P371 (1lj2A)A271 because G (3-10) conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1lj2A 263 :EQQINSID Number of specific fragments extracted= 1 number of extra gaps= 1 total=42648 # 2d2mC.363.12 read from T0547.t2k.many.frag # found chain 2d2mC in template set Warning: unaligning (T0547)S368 (2d2mC)A18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I369 (2d2mC)A19 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2d2mC)S21 because E (beta_S) conformation "forbidden" or filtered. T0547 363 :YDLYK 2d2mC 13 :MHNWD T0547 370 :K 2d2mC 20 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=42650 # 1mixA.363.85 read from T0547.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)K370 (1mixA)G287 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1mixA)N288 because G (3-10) conformation "forbidden" or filtered. T0547 363 :YDLYKSI 1mixA 280 :FMAHKNC Number of specific fragments extracted= 1 number of extra gaps= 1 total=42651 # 1hbkA.363.61 read from T0547.t2k.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)I369 (1hbkA)V63 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1hbkA)N65 because T (delta_L) conformation "forbidden" or filtered. T0547 364 :DLYKS 1hbkA 58 :EAWKS T0547 370 :K 1hbkA 64 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=42653 # 1rp4A.363.268 read from T0547.t2k.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)P371 (1rp4A)T315 because Y (epsilon') conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1rp4A 307 :DNVISQLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=42654 # 1q5zA.363.75 read from T0547.t2k.many.frag # found chain 1q5zA in training set T0547 363 :YDLYKSIKP 1q5zA 568 :DGLRAEILP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42655 # 1i60A.363.157 read from T0547.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)K370 (1i60A)N165 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1i60A)R166 because E (beta_S) conformation "forbidden" or filtered. T0547 363 :YDLYKSI 1i60A 158 :YEIVNTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=42656 # 1whsA.363.213 read from T0547.t2k.many.frag # found chain 1whsA in template set T0547 363 :YDLYKSIKP 1whsA 207 :KEACLHDSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=42657 # 1wa5C.363.292 read from T0547.t2k.many.frag # found chain 1wa5C in template set T0547 363 :YDLYKSIKP 1wa5C 293 :WNLLTSISN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42658 # 1z7lA.363.172 read from T0547.t2k.many.frag # found chain 1z7lA in template set T0547 363 :YDLYKSIKP 1z7lA 788 :ASLLQSVQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=42659 # 1vk5A.363.45 read from T0547.t2k.many.frag # found chain 1vk5A in training set T0547 363 :YDLYKSIKP 1vk5A 46 :QDYMKQVPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42660 # 1lfb.363.24 read from T0547.t2k.many.frag # found chain 1lfb in template set Warning: unaligning (T0547)P371 (1lfb)N33 because D (zeta) conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1lfb 25 :FQAYERQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=42661 # 1gjwA.363.259 read from T0547.t2k.many.frag # found chain 1gjwA in template set Warning: unaligning (T0547)K370 (1gjwA)T267 because Y (epsilon') conformation "forbidden" or filtered. T0547 363 :YDLYKSI 1gjwA 260 :KRHLKKF T0547 371 :P 1gjwA 268 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=42663 # 1g5tA.363.143 read from T0547.t2k.many.frag # found chain 1g5tA in training set T0547 363 :YDLYKSIKP 1g5tA 144 :ISALNARPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=42664 # 1rkiA.363.21 read from T0547.t2k.many.frag # found chain 1rkiA in training set T0547 363 :YDLYKSIKP 1rkiA 22 :CDCIYYYDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42665 # 1ckmA.363.168 read from T0547.t2k.many.frag # found chain 1ckmA in template set T0547 363 :YDLYKSIKP 1ckmA 169 :KRSLKEFKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42666 1r44A expands to /projects/compbio/data/pdb/1r44.pdb.gz 1r44A:# 1r44A.363.79 read from T0547.t2k.many.frag # adding 1r44A to template set # found chain 1r44A in template set Warning: unaligning (T0547)P371 (1r44A)N88 because G (3-10) conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1r44A 80 :MQWAAQPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=42667 # 1cnv.363.208 read from T0547.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)K370 (1cnv)Y216 because E (beta_S) conformation "forbidden" or filtered. T0547 363 :YDLYKSI 1cnv 209 :LSWTKSV T0547 371 :P 1cnv 217 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=42669 # 1wkqA.363.94 read from T0547.t2k.many.frag # found chain 1wkqA in training set T0547 363 :YDLYKSIKP 1wkqA 87 :LGAIYWARP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42670 # 1o9iA.363.192 read from T0547.t2k.many.frag # found chain 1o9iA in training set Warning: unaligning (T0547)Y366 (1o9iA)Y196 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K367 (1o9iA)G197 because S (epsilon) conformation "forbidden" or filtered. T0547 363 :YDL 1o9iA 193 :EEK T0547 368 :SIKP 1o9iA 198 :IIVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=42672 # 1jmkC.363.128 read from T0547.t2k.many.frag # found chain 1jmkC in training set T0547 363 :YDLYKSIKP 1jmkC 130 :MNVNRDNEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42673 # 1n3lA.363.133 read from T0547.t2k.many.frag # found chain 1n3lA in training set T0547 363 :YDLYKSIKP 1n3lA 134 :YRLSSVVTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=42674 # 1kyfA.363.145 read from T0547.t2k.many.frag # found chain 1kyfA in training set T0547 363 :YDLYKSIKP 1kyfA 837 :FQRWKQLSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42675 # 1ash.364.9 read from T0547.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1ash 9 :KSLEHAK T0547 372 :S 1ash 17 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=42677 # 2fokA.364.395 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 364 :DLYKSIK 2fokA 396 :ELRHKLK T0547 372 :S 2fokA 404 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=42679 # 1ucdA.364.66 read from T0547.t2k.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1ucdA 67 :TLWPNVL T0547 372 :S 1ucdA 75 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=42681 # 1h54A.364.535 read from T0547.t2k.many.frag # found chain 1h54A in template set Warning: unaligning (T0547)P371 (1h54A)L543 because D (zeta) conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1h54A 536 :DIVDRMY T0547 372 :S 1h54A 544 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=42683 # 1lj2A.364.58 read from T0547.t2k.many.frag # found chain 1lj2A in template set Warning: unaligning (T0547)K370 (1lj2A)D270 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1lj2A)A271 because G (3-10) conformation "forbidden" or filtered. T0547 364 :DLYKSI 1lj2A 264 :QQINSI T0547 372 :S 1lj2A 272 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=42685 # 1f7lA.364.35 read from T0547.t2k.many.frag # found chain 1f7lA in training set T0547 364 :DLYKSIKPS 1f7lA 36 :DQYYELSEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42686 # 1mixA.364.86 read from T0547.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)K370 (1mixA)G287 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1mixA)N288 because G (3-10) conformation "forbidden" or filtered. T0547 364 :DLYKSI 1mixA 281 :MAHKNC T0547 372 :S 1mixA 289 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=42688 # 1tx4A.364.61 read from T0547.t2k.many.frag # found chain 1tx4A in training set Warning: unaligning (T0547)I369 (1tx4A)G103 because L (left) conformation "forbidden" or filtered. T0547 364 :DLYKS 1tx4A 98 :QKYNM T0547 370 :KPS 1tx4A 104 :LPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=42690 # 2d2mC.364.13 read from T0547.t2k.many.frag # found chain 2d2mC in template set Warning: unaligning (T0547)I369 (2d2mC)A19 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2d2mC)S21 because E (beta_S) conformation "forbidden" or filtered. T0547 364 :DLYKS 2d2mC 14 :HNWDA T0547 370 :K 2d2mC 20 :W T0547 372 :S 2d2mC 22 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=42693 # 1hbkA.364.62 read from T0547.t2k.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)I369 (1hbkA)V63 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1hbkA)N65 because T (delta_L) conformation "forbidden" or filtered. T0547 364 :DLYKS 1hbkA 58 :EAWKS T0547 370 :K 1hbkA 64 :E T0547 372 :S 1hbkA 66 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=42696 # 1whsA.364.214 read from T0547.t2k.many.frag # found chain 1whsA in template set T0547 364 :DLYKSIKPS 1whsA 208 :EACLHDSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42697 # 1i60A.364.158 read from T0547.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)P371 (1i60A)R166 because E (beta_S) conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1i60A 159 :EIVNTVN T0547 372 :S 1i60A 167 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=42699 # 1w9zA.364.212 read from T0547.t2k.many.frag # found chain 1w9zA in template set T0547 364 :DLYKSIKPS 1w9zA 213 :NLVNSLVPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=42700 # 1gjwA.364.260 read from T0547.t2k.many.frag # found chain 1gjwA in template set Warning: unaligning (T0547)K370 (1gjwA)T267 because Y (epsilon') conformation "forbidden" or filtered. T0547 364 :DLYKSI 1gjwA 261 :RHLKKF T0547 371 :PS 1gjwA 268 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=42702 # 1z7lA.364.173 read from T0547.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0547)K370 (1z7lA)Q795 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1z7lA)P797 because P (beta_P) conformation "forbidden" or filtered. T0547 364 :DLYKSI 1z7lA 789 :SLLQSV T0547 371 :P 1z7lA 796 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=42704 # 1q5zA.364.76 read from T0547.t2k.many.frag # found chain 1q5zA in training set T0547 364 :DLYKSIKPS 1q5zA 569 :GLRAEILPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42705 # 1wuaA.364.279 read from T0547.t2k.many.frag # found chain 1wuaA in template set T0547 364 :DLYKSIKPS 1wuaA 280 :NSIMKCDID Number of specific fragments extracted= 1 number of extra gaps= 0 total=42706 # 1cnv.364.209 read from T0547.t2k.many.frag # found chain 1cnv in training set T0547 364 :DLYKSIKPS 1cnv 210 :SWTKSVYPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42707 # 1wa5C.364.293 read from T0547.t2k.many.frag # found chain 1wa5C in template set T0547 364 :DLYKSIKPS 1wa5C 294 :NLLTSISNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=42708 # 1rp4A.364.269 read from T0547.t2k.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)P371 (1rp4A)T315 because Y (epsilon') conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1rp4A 308 :NVISQLD T0547 372 :S 1rp4A 316 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=42710 # 1ud9A.364.75 read from T0547.t2k.many.frag # found chain 1ud9A in training set T0547 364 :DLYKSIKPS 1ud9A 76 :KLLKAAKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42711 # 1to6A.364.225 read from T0547.t2k.many.frag # found chain 1to6A in template set T0547 364 :DLYKSIKPS 1to6A 226 :DFYEKVSPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42712 # 1g5tA.364.144 read from T0547.t2k.many.frag # found chain 1g5tA in training set T0547 364 :DLYKSIKPS 1g5tA 145 :SALNARPGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=42713 # 1pprM.364.108 read from T0547.t2k.many.frag # found chain 1pprM in template set Warning: unaligning (T0547)I369 (1pprM)I114 because G (3-10) conformation "forbidden" or filtered. T0547 364 :DLYKS 1pprM 109 :DSVSK T0547 370 :KPS 1pprM 115 :TDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=42715 # 1kyfA.364.146 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)S368 (1kyfA)Q842 because G (3-10) conformation "forbidden" or filtered. T0547 364 :DLYK 1kyfA 838 :QRWK T0547 369 :IKPS 1kyfA 843 :LSNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=42717 # 1nw1A.364.239 read from T0547.t2k.many.frag # found chain 1nw1A in template set T0547 364 :DLYKSIKPS 1nw1A 240 :AHISLSKSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42718 1m4uA expands to /projects/compbio/data/pdb/1m4u.pdb.gz 1m4uA:# 1m4uA.364.80 read from T0547.t2k.many.frag # adding 1m4uA to template set # found chain 1m4uA in template set Warning: unaligning (T0547)P371 (1m4uA)G114 because S (epsilon) conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1m4uA 107 :LLRQRPS T0547 372 :S 1m4uA 115 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=42720 # 1vk5A.364.46 read from T0547.t2k.many.frag # found chain 1vk5A in training set T0547 364 :DLYKSIKPS 1vk5A 47 :DYMKQVPIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42721 # 1n7zA.364.22 read from T0547.t2k.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)K370 (1n7zA)G29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1n7zA)S30 because E (beta_S) conformation "forbidden" or filtered. T0547 364 :DLYKSI 1n7zA 23 :NFYNSI T0547 372 :S 1n7zA 31 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=42723 # 1n3lA.364.134 read from T0547.t2k.many.frag # found chain 1n3lA in training set T0547 364 :DLYKSIKPS 1n3lA 135 :RLSSVVTQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=42724 # 1ash.365.10 read from T0547.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 365 :LYKSIK 1ash 10 :SLEHAK T0547 372 :SN 1ash 17 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=42726 # 1ucdA.365.67 read from T0547.t2k.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. T0547 365 :LYKSIK 1ucdA 68 :LWPNVL T0547 372 :SN 1ucdA 75 :AN Number of specific fragments extracted= 2 number of extra gaps= 1 total=42728 # 2fokA.365.396 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 365 :LYKSIK 2fokA 397 :LRHKLK T0547 372 :SN 2fokA 404 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=42730 # 1hbkA.365.63 read from T0547.t2k.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)P371 (1hbkA)N65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1hbkA)N67 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKSIK 1hbkA 59 :AWKSVE T0547 372 :S 1hbkA 66 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=42732 # 2d2mC.365.14 read from T0547.t2k.many.frag # found chain 2d2mC in template set Warning: unaligning (T0547)I369 (2d2mC)A19 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2d2mC)S21 because E (beta_S) conformation "forbidden" or filtered. T0547 365 :LYKS 2d2mC 15 :NWDA T0547 370 :K 2d2mC 20 :W T0547 372 :SN 2d2mC 22 :AA Number of specific fragments extracted= 3 number of extra gaps= 2 total=42735 # 1lj2A.365.59 read from T0547.t2k.many.frag # found chain 1lj2A in template set Warning: unaligning (T0547)P371 (1lj2A)A271 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1lj2A)N273 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKSIK 1lj2A 265 :QINSID T0547 372 :S 1lj2A 272 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=42737 # 1mixA.365.87 read from T0547.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)K370 (1mixA)G287 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1mixA)N288 because G (3-10) conformation "forbidden" or filtered. T0547 365 :LYKSI 1mixA 282 :AHKNC T0547 372 :SN 1mixA 289 :MS Number of specific fragments extracted= 2 number of extra gaps= 1 total=42739 # 1tx4A.365.62 read from T0547.t2k.many.frag # found chain 1tx4A in training set Warning: unaligning (T0547)I369 (1tx4A)G103 because L (left) conformation "forbidden" or filtered. T0547 365 :LYKS 1tx4A 99 :KYNM T0547 370 :KPSN 1tx4A 104 :LPVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=42741 # 1f7lA.365.36 read from T0547.t2k.many.frag # found chain 1f7lA in training set Warning: unaligning (T0547)K370 (1f7lA)S42 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKSI 1f7lA 37 :QYYEL T0547 371 :PSN 1f7lA 43 :EKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=42743 # 1whsA.365.215 read from T0547.t2k.many.frag # found chain 1whsA in template set T0547 365 :LYKSIKPSN 1whsA 209 :ACLHDSFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=42744 # 1z7lA.365.78 read from T0547.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0547)S372 (1z7lA)Q701 because G (3-10) conformation "forbidden" or filtered. T0547 365 :LYKSIKP 1z7lA 694 :SLVLQRP T0547 373 :N 1z7lA 702 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=42746 # 2erbA.365.90 read from T0547.t2k.many.frag # found chain 2erbA in training set Warning: unaligning (T0547)I369 (2erbA)C95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2erbA)Y97 because D (zeta) conformation "forbidden" or filtered. T0547 365 :LYKS 2erbA 91 :MGKR T0547 370 :K 2erbA 96 :L T0547 372 :SN 2erbA 98 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=42749 # 1h54A.365.536 read from T0547.t2k.many.frag # found chain 1h54A in template set Warning: unaligning (T0547)P371 (1h54A)L543 because D (zeta) conformation "forbidden" or filtered. T0547 365 :LYKSIK 1h54A 537 :IVDRMY T0547 372 :SN 1h54A 544 :PY Number of specific fragments extracted= 2 number of extra gaps= 1 total=42751 # 1i60A.365.159 read from T0547.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)K370 (1i60A)N165 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1i60A)R166 because E (beta_S) conformation "forbidden" or filtered. T0547 365 :LYKSI 1i60A 160 :IVNTV T0547 372 :SN 1i60A 167 :DN Number of specific fragments extracted= 2 number of extra gaps= 1 total=42753 # 1cnv.365.210 read from T0547.t2k.many.frag # found chain 1cnv in training set T0547 365 :LYKSIKPSN 1cnv 211 :WTKSVYPRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42754 1yqyA expands to /projects/compbio/data/pdb/1yqy.pdb.gz 1yqyA:# 1yqyA.365.121 read from T0547.t2k.many.frag # adding 1yqyA to template set # found chain 1yqyA in template set T0547 365 :LYKSIKPSN 1yqyA 379 :LKLDIQPYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42755 # 1u5uA.365.151 read from T0547.t2k.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)S368 (1u5uA)P155 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1u5uA)G159 because S (epsilon) conformation "forbidden" or filtered. T0547 365 :LYK 1u5uA 152 :DFV T0547 369 :IKP 1u5uA 156 :VEE T0547 373 :N 1u5uA 160 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=42758 # 1m4uA.365.81 read from T0547.t2k.many.frag # found chain 1m4uA in template set Warning: unaligning (T0547)N373 (1m4uA)M116 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKSIKPS 1m4uA 108 :LRQRPSGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=42759 # 1q5zA.365.77 read from T0547.t2k.many.frag # found chain 1q5zA in training set T0547 365 :LYKSIKPSN 1q5zA 570 :LRAEILPND Number of specific fragments extracted= 1 number of extra gaps= 0 total=42760 # 1l0bA.365.197 read from T0547.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)S368 (1l0bA)V1789 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I369 (1l0bA)Y1790 because L (left) conformation "forbidden" or filtered. T0547 365 :LYK 1l0bA 1786 :SIS T0547 370 :KPSN 1l0bA 1791 :RCRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=42762 # 1n3lA.365.135 read from T0547.t2k.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)K370 (1n3lA)T141 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE in next template residue (1n3lA)S145 T0547 365 :LYKSI 1n3lA 136 :LSSVV T0547 371 :PS 1n3lA 142 :QH Number of specific fragments extracted= 2 number of extra gaps= 2 total=42764 # 1gjwA.365.261 read from T0547.t2k.many.frag # found chain 1gjwA in template set T0547 365 :LYKSIKPSN 1gjwA 262 :HLKKFTLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42765 # 1vk5A.365.47 read from T0547.t2k.many.frag # found chain 1vk5A in training set Warning: unaligning (T0547)K370 (1vk5A)P53 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKSI 1vk5A 48 :YMKQV T0547 371 :PSN 1vk5A 54 :IPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=42767 # 1w9zA.365.213 read from T0547.t2k.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)K370 (1w9zA)V219 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKSI 1w9zA 214 :LVNSL T0547 371 :PSN 1w9zA 220 :PGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=42769 # 1pz4A.365.20 read from T0547.t2k.many.frag # found chain 1pz4A in training set T0547 365 :LYKSIKPSN 1pz4A 15 :RLESIDPAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42770 # 1lfb.365.26 read from T0547.t2k.many.frag # found chain 1lfb in template set Warning: unaligning (T0547)P371 (1lfb)N33 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1lfb)P34 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKSIK 1lfb 27 :AYERQK T0547 373 :N 1lfb 35 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=42772 # 1uq5A.365.186 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE in next template residue (1uq5A)R197 Warning: unaligning (T0547)P371 because of BadResidue code BAD_PEPTIDE at template residue (1uq5A)R197 T0547 365 :LYKSI 1uq5A 191 :RIRYN T0547 372 :SN 1uq5A 198 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=42774 # 1pprM.365.109 read from T0547.t2k.many.frag # found chain 1pprM in template set T0547 365 :LYKSIKPSN 1pprM 110 :SVSKITDPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42775 1d8hA expands to /projects/compbio/data/pdb/1d8h.pdb.gz 1d8hA:# 1d8hA.365.53 read from T0547.t2k.many.frag # adding 1d8hA to template set # found chain 1d8hA in template set Warning: unaligning (T0547)L365 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)T292 Warning: unaligning (T0547)S368 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)I296 Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)I296 Warning: unaligning (T0547)K370 (1d8hA)A297 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)R301 T0547 366 :YK 1d8hA 293 :IY T0547 371 :PS 1d8hA 298 :PE Number of specific fragments extracted= 2 number of extra gaps= 3 total=42777 # 1kyfA.365.147 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)N373 (1kyfA)Q847 because G (3-10) conformation "forbidden" or filtered. T0547 365 :LYKSIKPS 1kyfA 839 :RWKQLSNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=42778 # 1ash.366.11 read from T0547.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 366 :YKSIK 1ash 11 :LEHAK T0547 372 :SNA 1ash 17 :DTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=42780 # 1ucdA.366.68 read from T0547.t2k.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. T0547 366 :YKSIK 1ucdA 69 :WPNVL T0547 372 :SNA 1ucdA 75 :ANN Number of specific fragments extracted= 2 number of extra gaps= 1 total=42782 # 1hbkA.366.64 read from T0547.t2k.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)P371 (1hbkA)N65 because T (delta_L) conformation "forbidden" or filtered. T0547 366 :YKSIK 1hbkA 60 :WKSVE T0547 372 :SNA 1hbkA 66 :LNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=42784 # 2fokA.366.397 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 366 :YKSIK 2fokA 398 :RHKLK T0547 372 :SNA 2fokA 404 :VPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=42786 # 1mixA.366.88 read from T0547.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)K370 (1mixA)G287 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1mixA)N288 because G (3-10) conformation "forbidden" or filtered. T0547 366 :YKSI 1mixA 283 :HKNC T0547 372 :SNA 1mixA 289 :MSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=42788 # 2d2mC.366.15 read from T0547.t2k.many.frag # found chain 2d2mC in template set Warning: unaligning (T0547)P371 (2d2mC)S21 because E (beta_S) conformation "forbidden" or filtered. T0547 366 :YKSIK 2d2mC 16 :WDAAW T0547 372 :SNA 2d2mC 22 :AAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=42790 # 1lj2A.366.60 read from T0547.t2k.many.frag # found chain 1lj2A in template set Warning: unaligning (T0547)P371 (1lj2A)A271 because G (3-10) conformation "forbidden" or filtered. T0547 366 :YKSIK 1lj2A 266 :INSID T0547 372 :SNA 1lj2A 272 :INP Number of specific fragments extracted= 2 number of extra gaps= 1 total=42792 # 1z7lA.366.79 read from T0547.t2k.many.frag # found chain 1z7lA in template set T0547 366 :YKSIKPSNA 1z7lA 695 :LVLQRPQTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=42793 # 2erbA.366.91 read from T0547.t2k.many.frag # found chain 2erbA in training set Warning: unaligning (T0547)P371 (2erbA)Y97 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (2erbA)G100 because Y (epsilon') conformation "forbidden" or filtered. T0547 366 :YKSIK 2erbA 92 :GKRCL T0547 372 :SN 2erbA 98 :PE Number of specific fragments extracted= 2 number of extra gaps= 2 total=42795 # 1f7lA.366.37 read from T0547.t2k.many.frag # found chain 1f7lA in training set T0547 366 :YKSIKPSNA 1f7lA 38 :YYELSEKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42796 # 1whsA.366.216 read from T0547.t2k.many.frag # found chain 1whsA in template set T0547 366 :YKSIKPSNA 1whsA 210 :CLHDSFIHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42797 # 1u5uA.366.152 read from T0547.t2k.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)K370 (1u5uA)E157 because E (beta_S) conformation "forbidden" or filtered. T0547 366 :YKSI 1u5uA 153 :FVPV T0547 371 :PSNA 1u5uA 158 :EGDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=42799 # 1tx4A.366.63 read from T0547.t2k.many.frag # found chain 1tx4A in training set Warning: unaligning (T0547)I369 (1tx4A)G103 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 (1tx4A)L104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1tx4A)D107 because E (beta_S) conformation "forbidden" or filtered. T0547 366 :YKS 1tx4A 100 :YNM T0547 371 :PS 1tx4A 105 :PV T0547 374 :A 1tx4A 108 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=42802 # 1pz4A.366.21 read from T0547.t2k.many.frag # found chain 1pz4A in training set T0547 366 :YKSIKPSNA 1pz4A 16 :LESIDPANR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42803 # 1l0bA.366.198 read from T0547.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)I369 (1l0bA)Y1790 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1l0bA)R1793 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1l0bA)D1794 because P (beta_P) conformation "forbidden" or filtered. T0547 366 :YKS 1l0bA 1787 :ISV T0547 370 :KP 1l0bA 1791 :RC T0547 374 :A 1l0bA 1795 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=42806 # 1yqyA.366.122 read from T0547.t2k.many.frag # found chain 1yqyA in template set T0547 366 :YKSIKPSNA 1yqyA 380 :KLDIQPYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42807 # 1m4uA.366.82 read from T0547.t2k.many.frag # found chain 1m4uA in template set Warning: unaligning (T0547)K367 (1m4uA)Q110 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 (1m4uA)S113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1m4uA)G114 because S (epsilon) conformation "forbidden" or filtered. T0547 366 :Y 1m4uA 109 :R T0547 368 :SI 1m4uA 111 :RP T0547 372 :SNA 1m4uA 115 :AMP Number of specific fragments extracted= 3 number of extra gaps= 2 total=42810 # 1h54A.366.537 read from T0547.t2k.many.frag # found chain 1h54A in template set Warning: unaligning (T0547)P371 (1h54A)L543 because D (zeta) conformation "forbidden" or filtered. T0547 366 :YKSIK 1h54A 538 :VDRMY T0547 372 :SNA 1h54A 544 :PYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=42812 # 1hjrA.366.109 read from T0547.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0547)P371 (1hjrA)S115 because G (3-10) conformation "forbidden" or filtered. T0547 366 :YKSIK 1hjrA 110 :VVGIG T0547 372 :SNA 1hjrA 116 :AEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=42814 # 1n3lA.366.136 read from T0547.t2k.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE in next template residue (1n3lA)S145 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE at template residue (1n3lA)S145 T0547 366 :YKSIKPS 1n3lA 137 :SSVVTQH Number of specific fragments extracted= 1 number of extra gaps= 1 total=42815 # 1d8hA.366.54 read from T0547.t2k.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)S368 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)I296 Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)I296 Warning: unaligning (T0547)K370 (1d8hA)A297 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)R301 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)R301 T0547 366 :YK 1d8hA 293 :IY T0547 371 :PS 1d8hA 298 :PE Number of specific fragments extracted= 2 number of extra gaps= 2 total=42817 # 1pprM.366.110 read from T0547.t2k.many.frag # found chain 1pprM in template set Warning: unaligning (T0547)I369 (1pprM)I114 because G (3-10) conformation "forbidden" or filtered. T0547 366 :YKS 1pprM 111 :VSK T0547 370 :KPSNA 1pprM 115 :TDPKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=42819 # 1t6cA.366.222 read from T0547.t2k.many.frag # found chain 1t6cA in training set T0547 366 :YKSIKPSNA 1t6cA 220 :EYNVYPYDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42820 # 1uq5A.366.187 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE in next template residue (1uq5A)R197 Warning: unaligning (T0547)P371 because of BadResidue code BAD_PEPTIDE at template residue (1uq5A)R197 T0547 366 :YKSI 1uq5A 192 :IRYN T0547 372 :SNA 1uq5A 198 :SAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=42822 1ri7A expands to /projects/compbio/data/pdb/1ri7.pdb.gz 1ri7A:# 1ri7A.366.35 read from T0547.t2k.many.frag # adding 1ri7A to template set # found chain 1ri7A in template set T0547 366 :YKSIKPSNA 1ri7A 36 :LQNDGKAPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=42823 # 1cnv.366.211 read from T0547.t2k.many.frag # found chain 1cnv in training set T0547 366 :YKSIKPSNA 1cnv 212 :TKSVYPRDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42824 # 1jmkC.366.131 read from T0547.t2k.many.frag # found chain 1jmkC in training set Warning: unaligning (T0547)S368 (1jmkC)D135 because D (zeta) conformation "forbidden" or filtered. T0547 366 :YK 1jmkC 133 :NR T0547 369 :IKPSNA 1jmkC 136 :NEALNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=42826 1o20A expands to /projects/compbio/data/pdb/1o20.pdb.gz 1o20A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 979, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 981, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 983, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 985, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 987, because occupancy 0.350 <= existing 0.650 in 1o20A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2477, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 2479, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 2553, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 2555, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 2557, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 2559, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 2561, because occupancy 0.350 <= existing 0.650 in 1o20A # 1o20A.366.307 read from T0547.t2k.many.frag # adding 1o20A to template set # found chain 1o20A in template set Warning: unaligning (T0547)K370 (1o20A)V300 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1o20A)A302 because P (beta_P) conformation "forbidden" or filtered. T0547 366 :YKSI 1o20A 296 :VPDV T0547 371 :P 1o20A 301 :P T0547 373 :NA 1o20A 303 :TE Number of specific fragments extracted= 3 number of extra gaps= 2 total=42829 # 1ak0.366.192 read from T0547.t2k.many.frag # found chain 1ak0 in training set T0547 366 :YKSIKPSNA 1ak0 193 :IKGDNISEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42830 # 1gjwA.366.262 read from T0547.t2k.many.frag # found chain 1gjwA in template set T0547 366 :YKSIKPSNA 1gjwA 263 :LKKFTLPPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42831 # 1ucdA.367.69 read from T0547.t2k.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. T0547 367 :KSIK 1ucdA 70 :PNVL T0547 372 :SNAL 1ucdA 75 :ANNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=42833 # 1ash.367.12 read from T0547.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 367 :KSIK 1ash 12 :EHAK T0547 372 :SNAL 1ash 17 :DTSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=42835 # 1hbkA.367.65 read from T0547.t2k.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)K370 (1hbkA)E64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1hbkA)N65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1hbkA)N67 because P (beta_P) conformation "forbidden" or filtered. T0547 367 :KSI 1hbkA 61 :KSV T0547 372 :S 1hbkA 66 :L T0547 374 :AL 1hbkA 68 :RE Number of specific fragments extracted= 3 number of extra gaps= 2 total=42838 # 1z7lA.367.80 read from T0547.t2k.many.frag # found chain 1z7lA in template set T0547 367 :KSIKPSNAL 1z7lA 696 :VLQRPQTWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=42839 # 2fokA.367.398 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 367 :KSIK 2fokA 399 :HKLK T0547 372 :SNAL 2fokA 404 :VPHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=42841 # 1mixA.367.89 read from T0547.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)K370 (1mixA)G287 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1mixA)N288 because G (3-10) conformation "forbidden" or filtered. T0547 367 :KSI 1mixA 284 :KNC T0547 372 :SNAL 1mixA 289 :MSEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=42843 # 1lj2A.367.61 read from T0547.t2k.many.frag # found chain 1lj2A in template set Warning: unaligning (T0547)K370 (1lj2A)D270 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1lj2A)A271 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1lj2A)N273 because P (beta_P) conformation "forbidden" or filtered. T0547 367 :KSI 1lj2A 267 :NSI T0547 372 :S 1lj2A 272 :I T0547 374 :AL 1lj2A 274 :PL Number of specific fragments extracted= 3 number of extra gaps= 2 total=42846 # 2erbA.367.92 read from T0547.t2k.many.frag # found chain 2erbA in training set Warning: unaligning (T0547)I369 (2erbA)C95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2erbA)Y97 because D (zeta) conformation "forbidden" or filtered. T0547 367 :KS 2erbA 93 :KR T0547 370 :K 2erbA 96 :L T0547 372 :SNAL 2erbA 98 :PEGE Number of specific fragments extracted= 3 number of extra gaps= 2 total=42849 # 1l0bA.367.199 read from T0547.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)I369 (1l0bA)Y1790 because L (left) conformation "forbidden" or filtered. T0547 367 :KS 1l0bA 1788 :SV T0547 370 :KPSNAL 1l0bA 1791 :RCRDLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=42851 # 2d2mC.367.16 read from T0547.t2k.many.frag # found chain 2d2mC in template set Warning: unaligning (T0547)I369 (2d2mC)A19 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2d2mC)S21 because E (beta_S) conformation "forbidden" or filtered. T0547 367 :KS 2d2mC 17 :DA T0547 370 :K 2d2mC 20 :W T0547 372 :SNAL 2d2mC 22 :AAYS Number of specific fragments extracted= 3 number of extra gaps= 2 total=42854 # 1whsA.367.217 read from T0547.t2k.many.frag # found chain 1whsA in template set T0547 367 :KSIKPSNAL 1whsA 211 :LHDSFIHPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=42855 # 1u5uA.367.153 read from T0547.t2k.many.frag # found chain 1u5uA in template set T0547 367 :KSIKPSNAL 1u5uA 154 :VPVEEGDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42856 # 1f7lA.367.38 read from T0547.t2k.many.frag # found chain 1f7lA in training set T0547 367 :KSIKPSNAL 1f7lA 39 :YELSEKRKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=42857 # 1o20A.367.308 read from T0547.t2k.many.frag # found chain 1o20A in template set Warning: unaligning (T0547)N373 (1o20A)T303 because E (beta_S) conformation "forbidden" or filtered. T0547 367 :KSIKPS 1o20A 297 :PDVVPA T0547 374 :AL 1o20A 304 :ED Number of specific fragments extracted= 2 number of extra gaps= 1 total=42859 # 1yqyA.367.123 read from T0547.t2k.many.frag # found chain 1yqyA in template set Warning: unaligning (T0547)K370 (1yqyA)Q384 because P (beta_P) conformation "forbidden" or filtered. T0547 367 :KSI 1yqyA 381 :LDI T0547 371 :PSNAL 1yqyA 385 :PYDIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=42861 # 1pprM.367.111 read from T0547.t2k.many.frag # found chain 1pprM in template set T0547 367 :KSIKPSNAL 1pprM 112 :SKITDPKVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42862 # 1t6cA.367.223 read from T0547.t2k.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)S368 (1t6cA)N222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 (1t6cA)Y224 because E (beta_S) conformation "forbidden" or filtered. T0547 367 :K 1t6cA 221 :Y T0547 369 :I 1t6cA 223 :V T0547 371 :PSNAL 1t6cA 225 :PYDPQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=42865 # 1ak0.367.193 read from T0547.t2k.many.frag # found chain 1ak0 in training set T0547 367 :KSIKPSNAL 1ak0 194 :KGDNISEPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=42866 # 1tx4A.367.64 read from T0547.t2k.many.frag # found chain 1tx4A in training set Warning: unaligning (T0547)I369 (1tx4A)G103 because L (left) conformation "forbidden" or filtered. T0547 367 :KS 1tx4A 101 :NM T0547 370 :KPSNAL 1tx4A 104 :LPVDFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=42868 # 1y5mA.367.211 read from T0547.t2k.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)S368 (1y5mA)G229 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 (1y5mA)I231 because E (beta_S) conformation "forbidden" or filtered. T0547 367 :K 1y5mA 228 :S T0547 369 :I 1y5mA 230 :I T0547 371 :PSNAL 1y5mA 232 :NAQAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=42871 # 1hjrA.367.110 read from T0547.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0547)S368 (1hjrA)G112 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1hjrA)S115 because G (3-10) conformation "forbidden" or filtered. T0547 367 :K 1hjrA 111 :V T0547 369 :IK 1hjrA 113 :IG T0547 372 :SNAL 1hjrA 116 :AEKS Number of specific fragments extracted= 3 number of extra gaps= 2 total=42874 # 1ri7A.367.36 read from T0547.t2k.many.frag # found chain 1ri7A in template set T0547 367 :KSIKPSNAL 1ri7A 37 :QNDGKAPLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=42875 # 1n3lA.367.137 read from T0547.t2k.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)K370 (1n3lA)T141 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE in next template residue (1n3lA)S145 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE at template residue (1n3lA)S145 T0547 367 :KSI 1n3lA 138 :SVV T0547 371 :PS 1n3lA 142 :QH T0547 375 :L 1n3lA 146 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=42878 # 1pz4A.367.22 read from T0547.t2k.many.frag # found chain 1pz4A in training set Warning: unaligning (T0547)S372 (1pz4A)A22 because G (3-10) conformation "forbidden" or filtered. T0547 367 :KSIKP 1pz4A 17 :ESIDP T0547 373 :NAL 1pz4A 23 :NRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=42880 # 1zbxB.367.50 read from T0547.t2k.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)K370 (1zbxB)N533 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1zbxB)L534 because E (beta_S) conformation "forbidden" or filtered. T0547 367 :KSI 1zbxB 530 :DQM T0547 372 :SNAL 1zbxB 535 :VKWN Number of specific fragments extracted= 2 number of extra gaps= 1 total=42882 1xqsA expands to /projects/compbio/data/pdb/1xqs.pdb.gz 1xqsA:# 1xqsA.367.246 read from T0547.t2k.many.frag # adding 1xqsA to template set # found chain 1xqsA in template set Warning: unaligning (T0547)P371 (1xqsA)Q330 because G (3-10) conformation "forbidden" or filtered. T0547 367 :KSIK 1xqsA 326 :QLLQ T0547 372 :SNAL 1xqsA 331 :HEEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=42884 # 1m4uA.367.83 read from T0547.t2k.many.frag # found chain 1m4uA in template set Warning: unaligning (T0547)K370 (1m4uA)S113 because P (beta_P) conformation "forbidden" or filtered. T0547 367 :KSI 1m4uA 110 :QRP T0547 371 :PSNAL 1m4uA 114 :GAMPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=42886 # 1dd9A.367.281 read from T0547.t2k.many.frag # found chain 1dd9A in training set T0547 367 :KSIKPSNAL 1dd9A 377 :MPQVDLSTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42887 # 1o9iA.367.196 read from T0547.t2k.many.frag # found chain 1o9iA in training set Warning: unaligning (T0547)K367 (1o9iA)G197 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1o9iA)G202 because G (3-10) conformation "forbidden" or filtered. T0547 368 :SIKP 1o9iA 198 :IIVP T0547 373 :NAL 1o9iA 203 :DMK Number of specific fragments extracted= 2 number of extra gaps= 2 total=42889 # 1o0sA.367.492 read from T0547.t2k.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)S368 (1o0sA)Q494 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1o0sA)H497 because E (beta_S) conformation "forbidden" or filtered. T0547 367 :K 1o0sA 493 :F T0547 369 :IK 1o0sA 495 :IR T0547 372 :SNAL 1o0sA 498 :VDND Number of specific fragments extracted= 3 number of extra gaps= 2 total=42892 # 1ash.368.13 read from T0547.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 368 :SIK 1ash 13 :HAK T0547 372 :SNALE 1ash 17 :DTSNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=42894 # 1ucdA.368.70 read from T0547.t2k.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)I369 (1ucdA)V72 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. T0547 368 :S 1ucdA 71 :N T0547 370 :K 1ucdA 73 :L T0547 372 :SNALE 1ucdA 75 :ANNQQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=42897 # 1hbkA.368.66 read from T0547.t2k.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)P371 (1hbkA)N65 because T (delta_L) conformation "forbidden" or filtered. T0547 368 :SIK 1hbkA 62 :SVE T0547 372 :SNALE 1hbkA 66 :LNRED Number of specific fragments extracted= 2 number of extra gaps= 1 total=42899 # 1z7lA.368.81 read from T0547.t2k.many.frag # found chain 1z7lA in template set T0547 368 :SIKPSNALE 1z7lA 697 :LQRPQTWGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42900 # 1mixA.368.90 read from T0547.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)K370 (1mixA)G287 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1mixA)N288 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1mixA)S290 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SI 1mixA 285 :NC T0547 372 :S 1mixA 289 :M T0547 374 :ALE 1mixA 291 :EIE Number of specific fragments extracted= 3 number of extra gaps= 2 total=42903 # 1l0bA.368.200 read from T0547.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)I369 (1l0bA)Y1790 because L (left) conformation "forbidden" or filtered. T0547 368 :S 1l0bA 1789 :V T0547 370 :KPSNALE 1l0bA 1791 :RCRDLDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=42905 # 2d2mC.368.17 read from T0547.t2k.many.frag # found chain 2d2mC in template set Warning: unaligning (T0547)I369 (2d2mC)A19 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2d2mC)S21 because E (beta_S) conformation "forbidden" or filtered. T0547 368 :S 2d2mC 18 :A T0547 370 :K 2d2mC 20 :W T0547 372 :SNALE 2d2mC 22 :AAYSD Number of specific fragments extracted= 3 number of extra gaps= 2 total=42908 # 1lj2A.368.62 read from T0547.t2k.many.frag # found chain 1lj2A in template set Warning: unaligning (T0547)P371 (1lj2A)A271 because G (3-10) conformation "forbidden" or filtered. T0547 368 :SIK 1lj2A 268 :SID T0547 372 :SNALE 1lj2A 272 :INPLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=42910 # 2fokA.368.399 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 368 :SIK 2fokA 400 :KLK T0547 372 :SNALE 2fokA 404 :VPHEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=42912 # 1ijbA.368.174 read from T0547.t2k.many.frag # found chain 1ijbA in training set Warning: unaligning (T0547)K370 (1ijbA)V676 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1ijbA)L677 because E (beta_S) conformation "forbidden" or filtered. T0547 368 :SI 1ijbA 674 :AF T0547 372 :SNALE 1ijbA 678 :SSVDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=42914 # 2erbA.368.93 read from T0547.t2k.many.frag # found chain 2erbA in training set Warning: unaligning (T0547)P371 (2erbA)Y97 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (2erbA)G100 because Y (epsilon') conformation "forbidden" or filtered. T0547 368 :SIK 2erbA 94 :RCL T0547 372 :SN 2erbA 98 :PE T0547 375 :LE 2erbA 101 :ET Number of specific fragments extracted= 3 number of extra gaps= 2 total=42917 # 1whsA.368.218 read from T0547.t2k.many.frag # found chain 1whsA in template set T0547 368 :SIKPSNALE 1whsA 212 :HDSFIHPSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=42918 # 1o20A.368.309 read from T0547.t2k.many.frag # found chain 1o20A in template set Warning: unaligning (T0547)S368 (1o20A)D298 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1o20A)A302 because P (beta_P) conformation "forbidden" or filtered. T0547 369 :IKP 1o20A 299 :VVP T0547 373 :NALE 1o20A 303 :TEDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=42920 # 1zbxB.368.51 read from T0547.t2k.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)P371 (1zbxB)L534 because E (beta_S) conformation "forbidden" or filtered. T0547 368 :SIK 1zbxB 531 :QMN T0547 372 :SNALE 1zbxB 535 :VKWND Number of specific fragments extracted= 2 number of extra gaps= 1 total=42922 # 1ak0.368.194 read from T0547.t2k.many.frag # found chain 1ak0 in training set Warning: unaligning (T0547)S368 (1ak0)G195 because T (delta_L) conformation "forbidden" or filtered. T0547 369 :IKPSNALE 1ak0 196 :DNISEPIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=42923 # 1h8eA.368.284 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K370 (1h8eA)R287 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1h8eA)G290 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1h8eA)A293 because T (delta_L) conformation "forbidden" or filtered. T0547 368 :SI 1h8eA 285 :LR T0547 371 :PS 1h8eA 288 :PP T0547 374 :AL 1h8eA 291 :RE Number of specific fragments extracted= 3 number of extra gaps= 3 total=42926 # 1hjrA.368.111 read from T0547.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0547)P371 (1hjrA)S115 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1hjrA)A116 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SIK 1hjrA 112 :GIG T0547 373 :NALE 1hjrA 117 :EKSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=42928 # 1ri7A.368.37 read from T0547.t2k.many.frag # found chain 1ri7A in template set Warning: unaligning (T0547)S372 (1ri7A)A42 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SIKP 1ri7A 38 :NDGK T0547 373 :NALE 1ri7A 43 :PLRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=42930 # 1dd9A.368.282 read from T0547.t2k.many.frag # found chain 1dd9A in training set T0547 368 :SIKPSNALE 1dd9A 378 :PQVDLSTPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=42931 # 1q52A.368.229 read from T0547.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)K370 (1q52A)A232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1q52A)V233 because E (beta_S) conformation "forbidden" or filtered. T0547 368 :SI 1q52A 230 :VN T0547 372 :SNALE 1q52A 234 :AEHAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=42933 # 1tx4A.368.65 read from T0547.t2k.many.frag # found chain 1tx4A in training set T0547 368 :SIKPSNALE 1tx4A 102 :MGLPVDFDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=42934 # 1t6cA.368.224 read from T0547.t2k.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)S368 (1t6cA)N222 because L (left) conformation "forbidden" or filtered. T0547 369 :IKPSNALE 1t6cA 223 :VYPYDPQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=42935 # 1u5uA.368.154 read from T0547.t2k.many.frag # found chain 1u5uA in template set T0547 368 :SIKPSNALE 1u5uA 155 :PVEEGDAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=42936 # 1pprM.368.112 read from T0547.t2k.many.frag # found chain 1pprM in template set T0547 368 :SIKPSNALE 1pprM 113 :KITDPKVPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=42937 # 1y5mA.368.212 read from T0547.t2k.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)N373 (1y5mA)Q234 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SIKPS 1y5mA 229 :GIINA T0547 374 :ALE 1y5mA 235 :ASP Number of specific fragments extracted= 2 number of extra gaps= 1 total=42939 # 1z9hA.368.178 read from T0547.t2k.many.frag # found chain 1z9hA in template set Warning: unaligning (T0547)P371 (1z9hA)K269 because D (zeta) conformation "forbidden" or filtered. T0547 368 :SIK 1z9hA 266 :REG T0547 372 :SNALE 1z9hA 270 :FGAVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=42941 2fefA expands to /projects/compbio/data/pdb/2fef.pdb.gz 2fefA:Skipped atom 367, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 371, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 373, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 375, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 377, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 379, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 381, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 383, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 505, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 509, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 511, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 513, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 515, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 517, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 519, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 882, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 886, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 1065, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 1069, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 1071, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 1073, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 1075, because occupancy 0.500 <= existing 0.500 in 2fefA Skipped atom 1077, because occupancy 0.500 <= existing 0.500 in 2fefA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2fefA.368.212 read from T0547.t2k.many.frag # adding 2fefA to template set # found chain 2fefA in template set Warning: unaligning (T0547)S368 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fefA)A214 Warning: unaligning (T0547)I369 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fefA)A214 Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fefA)S217 T0547 373 :NALE 2fefA 218 :DAQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=42942 # 1h8eA.368.283 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K370 (1h8eA)R286 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1h8eA)G290 because Y (epsilon') conformation "forbidden" or filtered. T0547 368 :SI 1h8eA 284 :LL T0547 371 :PSN 1h8eA 287 :RPP T0547 375 :LE 1h8eA 291 :RE Number of specific fragments extracted= 3 number of extra gaps= 2 total=42945 # 1yqyA.368.124 read from T0547.t2k.many.frag # found chain 1yqyA in template set T0547 368 :SIKPSNALE 1yqyA 382 :DIQPYDINQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=42946 # 1uq5A.368.189 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE in next template residue (1uq5A)R197 Warning: unaligning (T0547)P371 because of BadResidue code BAD_PEPTIDE at template residue (1uq5A)R197 T0547 368 :SI 1uq5A 194 :YN T0547 372 :SNALE 1uq5A 198 :SAPDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=42948 # 1ucdA.369.71 read from T0547.t2k.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. T0547 369 :IK 1ucdA 72 :VL T0547 372 :SNALEY 1ucdA 75 :ANNQQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=42950 # 1ash.369.14 read from T0547.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1ash)S19 because P (beta_P) conformation "forbidden" or filtered. T0547 369 :IK 1ash 14 :AK T0547 372 :SN 1ash 17 :DT T0547 375 :LEY 1ash 20 :NEA Number of specific fragments extracted= 3 number of extra gaps= 2 total=42953 # 1hbkA.369.67 read from T0547.t2k.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)P371 (1hbkA)N65 because T (delta_L) conformation "forbidden" or filtered. T0547 369 :IK 1hbkA 63 :VE T0547 372 :SNALEY 1hbkA 66 :LNREDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=42955 # 1z7lA.369.82 read from T0547.t2k.many.frag # found chain 1z7lA in template set T0547 369 :IKPSNALEY 1z7lA 698 :QRPQTWGDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=42956 # 1mixA.369.91 read from T0547.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)K370 (1mixA)G287 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1mixA)N288 because G (3-10) conformation "forbidden" or filtered. T0547 369 :I 1mixA 286 :C T0547 372 :SNALEY 1mixA 289 :MSEIEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=42958 # 1ijbA.369.175 read from T0547.t2k.many.frag # found chain 1ijbA in training set Warning: unaligning (T0547)P371 (1ijbA)L677 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1ijbA)S679 because Y (epsilon') conformation "forbidden" or filtered. T0547 369 :IK 1ijbA 675 :FV T0547 372 :S 1ijbA 678 :S T0547 374 :ALEY 1ijbA 680 :VDEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=42961 # 1l0bA.369.201 read from T0547.t2k.many.frag # found chain 1l0bA in template set T0547 369 :IKPSNALEY 1l0bA 1790 :YRCRDLDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=42962 # 2d2mC.369.18 read from T0547.t2k.many.frag # found chain 2d2mC in template set Warning: unaligning (T0547)P371 (2d2mC)S21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (2d2mC)Y24 because E (beta_S) conformation "forbidden" or filtered. T0547 369 :IK 2d2mC 19 :AW T0547 372 :SN 2d2mC 22 :AA T0547 375 :LEY 2d2mC 25 :SDR Number of specific fragments extracted= 3 number of extra gaps= 2 total=42965 # 1lj2A.369.63 read from T0547.t2k.many.frag # found chain 1lj2A in template set Warning: unaligning (T0547)K370 (1lj2A)D270 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1lj2A)A271 because G (3-10) conformation "forbidden" or filtered. T0547 369 :I 1lj2A 269 :I T0547 372 :SNALEY 1lj2A 272 :INPLHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=42967 # 1dd9A.369.283 read from T0547.t2k.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)N373 (1dd9A)S383 because G (3-10) conformation "forbidden" or filtered. T0547 369 :IKPS 1dd9A 379 :QVDL T0547 374 :ALEY 1dd9A 384 :TPDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=42969 # 1h8eA.369.285 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K370 (1h8eA)R287 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1h8eA)G290 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L375 (1h8eA)E292 because L (left) conformation "forbidden" or filtered. T0547 369 :I 1h8eA 286 :R T0547 371 :PS 1h8eA 288 :PP T0547 374 :A 1h8eA 291 :R T0547 376 :EY 1h8eA 293 :AY Number of specific fragments extracted= 4 number of extra gaps= 3 total=42973 # 1whsA.369.219 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)K370 (1whsA)S214 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1whsA)P218 because P (beta_P) conformation "forbidden" or filtered. T0547 369 :I 1whsA 213 :D T0547 371 :PSN 1whsA 215 :FIH T0547 375 :LEY 1whsA 219 :SPA Number of specific fragments extracted= 3 number of extra gaps= 2 total=42976 # 1o20A.369.310 read from T0547.t2k.many.frag # found chain 1o20A in template set T0547 369 :IKPSNALEY 1o20A 299 :VVPATEDDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=42977 # 2erbA.369.94 read from T0547.t2k.many.frag # found chain 2erbA in training set Warning: unaligning (T0547)I369 (2erbA)C95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2erbA)Y97 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (2erbA)G100 because Y (epsilon') conformation "forbidden" or filtered. T0547 370 :K 2erbA 96 :L T0547 372 :SN 2erbA 98 :PE T0547 375 :LEY 2erbA 101 :ETL Number of specific fragments extracted= 3 number of extra gaps= 3 total=42980 # 1h8eA.369.284 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K370 (1h8eA)R286 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y377 (1h8eA)A293 because T (delta_L) conformation "forbidden" or filtered. T0547 369 :I 1h8eA 285 :L T0547 371 :PSNALE 1h8eA 287 :RPPGRE Number of specific fragments extracted= 2 number of extra gaps= 2 total=42982 # 2fokA.369.400 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 369 :IK 2fokA 401 :LK T0547 372 :SNALEY 2fokA 404 :VPHEYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=42984 # 1ri7A.369.38 read from T0547.t2k.many.frag # found chain 1ri7A in template set Warning: unaligning (T0547)N373 (1ri7A)P43 because P (beta_P) conformation "forbidden" or filtered. T0547 369 :IKPS 1ri7A 39 :DGKA T0547 374 :ALEY 1ri7A 44 :LREI Number of specific fragments extracted= 2 number of extra gaps= 1 total=42986 # 1hjrA.369.112 read from T0547.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0547)P371 (1hjrA)S115 because G (3-10) conformation "forbidden" or filtered. T0547 369 :IK 1hjrA 113 :IG T0547 372 :SNALEY 1hjrA 116 :AEKSQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=42988 # 1zbxB.369.52 read from T0547.t2k.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)K370 (1zbxB)N533 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1zbxB)L534 because E (beta_S) conformation "forbidden" or filtered. T0547 369 :I 1zbxB 532 :M T0547 372 :SNALEY 1zbxB 535 :VKWNDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=42990 # 1y5mA.369.213 read from T0547.t2k.many.frag # found chain 1y5mA in template set T0547 369 :IKPSNALEY 1y5mA 230 :IINAQASPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=42991 # 1q52A.369.230 read from T0547.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)P371 (1q52A)V233 because E (beta_S) conformation "forbidden" or filtered. T0547 369 :IK 1q52A 231 :NA T0547 372 :SNALEY 1q52A 234 :AEHAEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=42993 # 1ak0.369.195 read from T0547.t2k.many.frag # found chain 1ak0 in training set T0547 369 :IKPSNALEY 1ak0 196 :DNISEPITT Number of specific fragments extracted= 1 number of extra gaps= 0 total=42994 # 1z9hA.369.179 read from T0547.t2k.many.frag # found chain 1z9hA in template set Warning: unaligning (T0547)P371 (1z9hA)K269 because D (zeta) conformation "forbidden" or filtered. T0547 369 :IK 1z9hA 267 :EG T0547 372 :SNALEY 1z9hA 270 :FGAVEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=42996 # 1uq5A.369.190 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)I369 (1uq5A)N195 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE in next template residue (1uq5A)R197 Warning: unaligning (T0547)P371 because of BadResidue code BAD_PEPTIDE at template residue (1uq5A)R197 T0547 372 :SNALEY 1uq5A 198 :SAPDPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=42997 # 1t6cA.369.225 read from T0547.t2k.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)P371 (1t6cA)P225 because C (cis) conformation "forbidden" or filtered. T0547 369 :IK 1t6cA 223 :VY T0547 372 :SNALEY 1t6cA 226 :YDPQKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=42999 # 2fefA.369.213 read from T0547.t2k.many.frag # found chain 2fefA in template set Warning: unaligning (T0547)I369 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fefA)A214 Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fefA)S217 T0547 373 :NALEY 2fefA 218 :DAQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43000 2bptA expands to /projects/compbio/data/pdb/2bpt.pdb.gz 2bptA:# 2bptA.369.273 read from T0547.t2k.many.frag # adding 2bptA to template set # found chain 2bptA in template set Warning: unaligning (T0547)P371 (2bptA)K276 because G (3-10) conformation "forbidden" or filtered. T0547 369 :IK 2bptA 274 :TM T0547 372 :SNALEY 2bptA 277 :SPNDKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=43002 # 1ydiA.369.152 read from T0547.t2k.many.frag # found chain 1ydiA in training set Warning: unaligning (T0547)P371 (1ydiA)V150 because G (3-10) conformation "forbidden" or filtered. T0547 369 :IK 1ydiA 148 :AE T0547 372 :SNALEY 1ydiA 151 :VETMED Number of specific fragments extracted= 2 number of extra gaps= 1 total=43004 # 1j77A.369.32 read from T0547.t2k.many.frag # found chain 1j77A in training set Warning: unaligning (T0547)K370 (1j77A)Q34 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1j77A)S38 because Y (epsilon') conformation "forbidden" or filtered. T0547 369 :I 1j77A 33 :V T0547 371 :PSN 1j77A 35 :PFV T0547 375 :LEY 1j77A 39 :KEN Number of specific fragments extracted= 3 number of extra gaps= 2 total=43007 1iicA expands to /projects/compbio/data/pdb/1iic.pdb.gz 1iicA:# 1iicA.369.68 read from T0547.t2k.many.frag # adding 1iicA to template set # found chain 1iicA in template set Warning: unaligning (T0547)N373 (1iicA)D106 because Y (epsilon') conformation "forbidden" or filtered. T0547 369 :IKPS 1iicA 102 :NYVE T0547 374 :ALEY 1iicA 107 :RDAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=43009 # 1ash.370.15 read from T0547.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 370 :K 1ash 15 :K T0547 372 :SNALEYL 1ash 17 :DTSNEAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=43011 # 1hbkA.370.68 read from T0547.t2k.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)P371 (1hbkA)N65 because T (delta_L) conformation "forbidden" or filtered. T0547 370 :K 1hbkA 64 :E T0547 372 :SNALEYL 1hbkA 66 :LNREDAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=43013 # 1ucdA.370.72 read from T0547.t2k.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. T0547 370 :K 1ucdA 73 :L T0547 372 :SNALEYL 1ucdA 75 :ANNQQFW Number of specific fragments extracted= 2 number of extra gaps= 1 total=43015 # 1z7lA.370.83 read from T0547.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0547)K370 (1z7lA)R699 because P (beta_P) conformation "forbidden" or filtered. T0547 371 :PSNALEYL 1z7lA 700 :PQTWGDCV Number of specific fragments extracted= 1 number of extra gaps= 1 total=43016 # 1mixA.370.92 read from T0547.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)K370 (1mixA)G287 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1mixA)N288 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1mixA)M289 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1mixA)S290 because P (beta_P) conformation "forbidden" or filtered. T0547 374 :ALEYL 1mixA 291 :EIEAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=43017 # 1ijbA.370.176 read from T0547.t2k.many.frag # found chain 1ijbA in training set Warning: unaligning (T0547)P371 (1ijbA)L677 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1ijbA)S679 because Y (epsilon') conformation "forbidden" or filtered. T0547 370 :K 1ijbA 676 :V T0547 372 :S 1ijbA 678 :S T0547 374 :ALEYL 1ijbA 680 :VDELE Number of specific fragments extracted= 3 number of extra gaps= 2 total=43020 # 1h8eA.370.286 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)N373 (1h8eA)G290 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L375 (1h8eA)E292 because L (left) conformation "forbidden" or filtered. T0547 370 :KPS 1h8eA 287 :RPP T0547 374 :A 1h8eA 291 :R T0547 376 :EYL 1h8eA 293 :AYP Number of specific fragments extracted= 3 number of extra gaps= 2 total=43023 # 1l0bA.370.202 read from T0547.t2k.many.frag # found chain 1l0bA in template set T0547 370 :KPSNALEYL 1l0bA 1791 :RCRDLDAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43024 # 1dd9A.370.284 read from T0547.t2k.many.frag # found chain 1dd9A in training set T0547 370 :KPSNALEYL 1dd9A 380 :VDLSTPDGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43025 # 1q52A.370.231 read from T0547.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)P371 (1q52A)V233 because E (beta_S) conformation "forbidden" or filtered. T0547 370 :K 1q52A 232 :A T0547 372 :SNALEYL 1q52A 234 :AEHAELE Number of specific fragments extracted= 2 number of extra gaps= 1 total=43027 # 1lj2A.370.64 read from T0547.t2k.many.frag # found chain 1lj2A in template set Warning: unaligning (T0547)P371 (1lj2A)A271 because G (3-10) conformation "forbidden" or filtered. T0547 370 :K 1lj2A 270 :D T0547 372 :SNALEYL 1lj2A 272 :INPLHAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=43029 # 2d2mC.370.19 read from T0547.t2k.many.frag # found chain 2d2mC in template set Warning: unaligning (T0547)P371 (2d2mC)S21 because E (beta_S) conformation "forbidden" or filtered. T0547 370 :K 2d2mC 20 :W T0547 372 :SNALEYL 2d2mC 22 :AAYSDRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=43031 # 1z9hA.370.180 read from T0547.t2k.many.frag # found chain 1z9hA in template set Warning: unaligning (T0547)P371 (1z9hA)K269 because D (zeta) conformation "forbidden" or filtered. T0547 370 :K 1z9hA 268 :G T0547 372 :SNALEYL 1z9hA 270 :FGAVEGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=43033 # 1ri7A.370.39 read from T0547.t2k.many.frag # found chain 1ri7A in template set Warning: unaligning (T0547)N373 (1ri7A)P43 because P (beta_P) conformation "forbidden" or filtered. T0547 370 :KPS 1ri7A 40 :GKA T0547 374 :ALEYL 1ri7A 44 :LREIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=43035 # 1whsA.370.220 read from T0547.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)K370 (1whsA)S214 because P (beta_P) conformation "forbidden" or filtered. T0547 371 :PSNALEYL 1whsA 215 :FIHPSPAC Number of specific fragments extracted= 1 number of extra gaps= 1 total=43036 # 2bptA.370.274 read from T0547.t2k.many.frag # found chain 2bptA in template set Warning: unaligning (T0547)P371 (2bptA)K276 because G (3-10) conformation "forbidden" or filtered. T0547 370 :K 2bptA 275 :M T0547 372 :SNALEYL 2bptA 277 :SPNDKVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=43038 # 1o20A.370.311 read from T0547.t2k.many.frag # found chain 1o20A in template set T0547 370 :KPSNALEYL 1o20A 300 :VPATEDDWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=43039 # 1h8eA.370.285 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K370 (1h8eA)R286 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1h8eA)P289 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1h8eA)G290 because Y (epsilon') conformation "forbidden" or filtered. T0547 371 :PS 1h8eA 287 :RP T0547 375 :LEYL 1h8eA 291 :REAY Number of specific fragments extracted= 2 number of extra gaps= 2 total=43041 # 1y5mA.370.214 read from T0547.t2k.many.frag # found chain 1y5mA in template set T0547 370 :KPSNALEYL 1y5mA 231 :INAQASPKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43042 # 1ydiA.370.153 read from T0547.t2k.many.frag # found chain 1ydiA in training set Warning: unaligning (T0547)P371 (1ydiA)V150 because G (3-10) conformation "forbidden" or filtered. T0547 370 :K 1ydiA 149 :E T0547 372 :SNALEYL 1ydiA 151 :VETMEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=43044 # 1hjrA.370.113 read from T0547.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0547)P371 (1hjrA)S115 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1hjrA)A116 because P (beta_P) conformation "forbidden" or filtered. T0547 370 :K 1hjrA 114 :G T0547 373 :NALEYL 1hjrA 117 :EKSQVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=43046 # 2erbA.370.95 read from T0547.t2k.many.frag # found chain 2erbA in training set Warning: unaligning (T0547)P371 (2erbA)Y97 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (2erbA)G100 because Y (epsilon') conformation "forbidden" or filtered. T0547 370 :K 2erbA 96 :L T0547 372 :SN 2erbA 98 :PE T0547 375 :LEYL 2erbA 101 :ETLC Number of specific fragments extracted= 3 number of extra gaps= 2 total=43049 # 1zbxB.370.53 read from T0547.t2k.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)K370 (1zbxB)N533 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1zbxB)L534 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1zbxB)V535 because P (beta_P) conformation "forbidden" or filtered. T0547 373 :NALEYL 1zbxB 536 :KWNDFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=43050 # 1t3gA.370.134 read from T0547.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0547)A374 (1t3gA)G541 because Y (epsilon') conformation "forbidden" or filtered. T0547 370 :KPSN 1t3gA 537 :IKWH T0547 375 :LEYL 1t3gA 542 :PKCN Number of specific fragments extracted= 2 number of extra gaps= 1 total=43052 # 1uq5A.370.191 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE in next template residue (1uq5A)R197 Warning: unaligning (T0547)P371 because of BadResidue code BAD_PEPTIDE at template residue (1uq5A)R197 T0547 372 :SNALEYL 1uq5A 198 :SAPDPSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=43053 # 1j7xA.370.76 read from T0547.t2k.many.frag # found chain 1j7xA in training set Warning: unaligning (T0547)N373 (1j7xA)Q81 because P (beta_P) conformation "forbidden" or filtered. T0547 370 :KPS 1j7xA 78 :DSI T0547 374 :ALEYL 1j7xA 82 :AENIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=43055 # 1j77A.370.33 read from T0547.t2k.many.frag # found chain 1j77A in training set Warning: unaligning (T0547)K370 (1j77A)Q34 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1j77A)S38 because Y (epsilon') conformation "forbidden" or filtered. T0547 371 :PSN 1j77A 35 :PFV T0547 375 :LEYL 1j77A 39 :KENY Number of specific fragments extracted= 2 number of extra gaps= 2 total=43057 # 1iicA.370.69 read from T0547.t2k.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)N373 (1iicA)D106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y377 (1iicA)G110 because T (delta_L) conformation "forbidden" or filtered. T0547 370 :KPS 1iicA 103 :YVE T0547 374 :ALE 1iicA 107 :RDA T0547 378 :L 1iicA 111 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=43060 1mkfA expands to /projects/compbio/data/pdb/1mkf.pdb.gz 1mkfA:# 1mkfA.370.39 read from T0547.t2k.many.frag # adding 1mkfA to template set # found chain 1mkfA in template set Warning: unaligning (T0547)K370 (1mkfA)A40 because Y (epsilon') conformation "forbidden" or filtered. T0547 371 :PSNALEYL 1mkfA 41 :ETEVTECA Number of specific fragments extracted= 1 number of extra gaps= 1 total=43061 # 2fefA.370.214 read from T0547.t2k.many.frag # found chain 2fefA in template set Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fefA)S217 T0547 373 :NALEYL 2fefA 218 :DAQALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43062 # 1ash.371.16 read from T0547.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1ash 17 :DTSNEARQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=43063 # 1ijbA.371.177 read from T0547.t2k.many.frag # found chain 1ijbA in training set Warning: unaligning (T0547)P371 (1ijbA)L677 because E (beta_S) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1ijbA 678 :SSVDELEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=43064 # 1z7lA.371.84 read from T0547.t2k.many.frag # found chain 1z7lA in template set T0547 371 :PSNALEYLH 1z7lA 700 :PQTWGDCVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43065 # 1hbkA.371.69 read from T0547.t2k.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)P371 (1hbkA)N65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1hbkA)N67 because P (beta_P) conformation "forbidden" or filtered. T0547 372 :S 1hbkA 66 :L T0547 374 :ALEYL 1hbkA 68 :REDAQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=43067 # 1h8eA.371.287 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)N373 (1h8eA)G290 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L375 (1h8eA)E292 because L (left) conformation "forbidden" or filtered. T0547 371 :PS 1h8eA 288 :PP T0547 374 :A 1h8eA 291 :R T0547 376 :EYLH 1h8eA 293 :AYPG Number of specific fragments extracted= 3 number of extra gaps= 2 total=43070 # 1ucdA.371.73 read from T0547.t2k.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1ucdA)N76 because D (zeta) conformation "forbidden" or filtered. T0547 372 :S 1ucdA 75 :A T0547 374 :ALEYLH 1ucdA 77 :NQQFWS Number of specific fragments extracted= 2 number of extra gaps= 2 total=43072 # 1mixA.371.93 read from T0547.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)P371 (1mixA)N288 because G (3-10) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1mixA 289 :MSEIEAKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=43073 # 1q52A.371.232 read from T0547.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)P371 (1q52A)V233 because E (beta_S) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1q52A 234 :AEHAELET Number of specific fragments extracted= 1 number of extra gaps= 1 total=43074 # 1l0bA.371.203 read from T0547.t2k.many.frag # found chain 1l0bA in template set T0547 371 :PSNALEYLH 1l0bA 1792 :CRDLDAYLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43075 # 1dd9A.371.285 read from T0547.t2k.many.frag # found chain 1dd9A in training set T0547 371 :PSNALEYLH 1dd9A 381 :DLSTPDGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43076 # 2bptA.371.275 read from T0547.t2k.many.frag # found chain 2bptA in template set Warning: unaligning (T0547)P371 (2bptA)K276 because G (3-10) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 2bptA 277 :SPNDKVAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=43077 # 1t3gA.371.135 read from T0547.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0547)A374 (1t3gA)G541 because Y (epsilon') conformation "forbidden" or filtered. T0547 371 :PSN 1t3gA 538 :KWH T0547 375 :LEYLH 1t3gA 542 :PKCNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=43079 # 1j7xA.371.77 read from T0547.t2k.many.frag # found chain 1j7xA in training set Warning: unaligning (T0547)S372 (1j7xA)I80 because P (beta_P) conformation "forbidden" or filtered. T0547 371 :P 1j7xA 79 :S T0547 373 :NALEYLH 1j7xA 81 :QAENIPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=43081 # 1z9hA.371.181 read from T0547.t2k.many.frag # found chain 1z9hA in template set Warning: unaligning (T0547)P371 (1z9hA)K269 because D (zeta) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1z9hA 270 :FGAVEGAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=43082 # 1mkfA.371.40 read from T0547.t2k.many.frag # found chain 1mkfA in template set T0547 371 :PSNALEYLH 1mkfA 41 :ETEVTECAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43083 # 1ri7A.371.40 read from T0547.t2k.many.frag # found chain 1ri7A in template set Warning: unaligning (T0547)N373 (1ri7A)P43 because P (beta_P) conformation "forbidden" or filtered. T0547 371 :PS 1ri7A 41 :KA T0547 374 :ALEYLH 1ri7A 44 :LREISK Number of specific fragments extracted= 2 number of extra gaps= 1 total=43085 # 1lj2A.371.65 read from T0547.t2k.many.frag # found chain 1lj2A in template set Warning: unaligning (T0547)P371 (1lj2A)A271 because G (3-10) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1lj2A 272 :INPLHAFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=43086 # 1h8eA.371.286 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)N373 (1h8eA)P289 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1h8eA)G290 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y377 (1h8eA)A293 because T (delta_L) conformation "forbidden" or filtered. T0547 371 :PS 1h8eA 287 :RP T0547 375 :LE 1h8eA 291 :RE T0547 378 :LH 1h8eA 294 :YP Number of specific fragments extracted= 3 number of extra gaps= 2 total=43089 # 2bduA.371.209 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 371 :PSNALEYLH 2bduA 210 :VFNKHDGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43090 # 1y5mA.371.215 read from T0547.t2k.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)A374 (1y5mA)A235 because P (beta_P) conformation "forbidden" or filtered. T0547 371 :PSN 1y5mA 232 :NAQ T0547 375 :LEYLH 1y5mA 236 :SPKEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=43092 # 1ydiA.371.154 read from T0547.t2k.many.frag # found chain 1ydiA in training set Warning: unaligning (T0547)P371 (1ydiA)V150 because G (3-10) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1ydiA 151 :VETMEDLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=43093 # 1iicA.371.70 read from T0547.t2k.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)N373 (1iicA)D106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y377 (1iicA)G110 because T (delta_L) conformation "forbidden" or filtered. T0547 371 :PS 1iicA 104 :VE T0547 374 :ALE 1iicA 107 :RDA T0547 378 :LH 1iicA 111 :FR Number of specific fragments extracted= 3 number of extra gaps= 2 total=43096 # 2fefA.371.215 read from T0547.t2k.many.frag # found chain 2fefA in template set Warning: unaligning (T0547)S372 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fefA)S217 T0547 373 :NALEYLH 2fefA 218 :DAQALAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=43097 # 2bptA.371.736 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 371 :PSNALEYLH 2bptA 737 :ENGTLEALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43098 # 2d2mC.371.20 read from T0547.t2k.many.frag # found chain 2d2mC in template set Warning: unaligning (T0547)P371 (2d2mC)S21 because E (beta_S) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 2d2mC 22 :AAYSDRRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=43099 # 1e7lA.371.73 read from T0547.t2k.many.frag # found chain 1e7lA in training set Warning: unaligning (T0547)P371 (1e7lA)R74 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L378 (1e7lA)G81 because T (delta_L) conformation "forbidden" or filtered. T0547 372 :SNALEY 1e7lA 75 :SGLKGQ T0547 379 :H 1e7lA 82 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=43101 # 1hjrA.371.114 read from T0547.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0547)P371 (1hjrA)S115 because G (3-10) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1hjrA 116 :AEKSQVQH Number of specific fragments extracted= 1 number of extra gaps= 1 total=43102 # 1g60A.371.42 read from T0547.t2k.many.frag # found chain 1g60A in template set Warning: unaligning (T0547)P371 (1g60A)F43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1g60A)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :S 1g60A 44 :D T0547 374 :ALEYLH 1g60A 46 :HNEFLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=43104 # 1uq5A.371.192 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)P371 because of BadResidue code BAD_PEPTIDE at template residue (1uq5A)R197 T0547 372 :SNALEYLH 1uq5A 198 :SAPDPSVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=43105 # 1j77A.371.34 read from T0547.t2k.many.frag # found chain 1j77A in training set Warning: unaligning (T0547)S372 (1j77A)F36 because G (3-10) conformation "forbidden" or filtered. T0547 371 :P 1j77A 35 :P T0547 373 :NALEYLH 1j77A 37 :VSKENYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=43107 # 1ijbA.372.178 read from T0547.t2k.many.frag # found chain 1ijbA in training set Warning: unaligning (T0547)N373 (1ijbA)S679 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :S 1ijbA 678 :S T0547 374 :ALEYLHD 1ijbA 680 :VDELEQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=43109 # 1h8eA.372.288 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)N373 (1h8eA)G290 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L375 (1h8eA)E292 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1h8eA)A293 because T (delta_L) conformation "forbidden" or filtered. T0547 372 :S 1h8eA 289 :P T0547 374 :A 1h8eA 291 :R T0547 377 :YLHD 1h8eA 294 :YPGD Number of specific fragments extracted= 3 number of extra gaps= 2 total=43112 # 1ash.372.17 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 372 :SNALEYLHD 1ash 17 :DTSNEARQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43113 # 1z7lA.372.85 read from T0547.t2k.many.frag # found chain 1z7lA in template set T0547 372 :SNALEYLHD 1z7lA 701 :QTWGDCVTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=43114 # 1q52A.372.233 read from T0547.t2k.many.frag # found chain 1q52A in training set T0547 372 :SNALEYLHD 1q52A 234 :AEHAELETV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43115 # 1hbkA.372.70 read from T0547.t2k.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)N373 (1hbkA)N67 because P (beta_P) conformation "forbidden" or filtered. T0547 372 :S 1hbkA 66 :L T0547 374 :ALEYL 1hbkA 68 :REDAQ T0547 380 :D 1hbkA 73 :K Number of specific fragments extracted= 3 number of extra gaps= 1 total=43118 # 1mixA.372.94 read from T0547.t2k.many.frag # found chain 1mixA in training set T0547 372 :SNALEYLHD 1mixA 289 :MSEIEAKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43119 # 1j7xA.372.78 read from T0547.t2k.many.frag # found chain 1j7xA in training set T0547 372 :SNALEYLHD 1j7xA 80 :IQAENIPED Number of specific fragments extracted= 1 number of extra gaps= 0 total=43120 # 1t3gA.372.136 read from T0547.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0547)A374 (1t3gA)G541 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :SN 1t3gA 539 :WH T0547 375 :LEYLHD 1t3gA 542 :PKCNKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=43122 # 2bptA.372.276 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 372 :SNALEYLHD 2bptA 277 :SPNDKVASM Number of specific fragments extracted= 1 number of extra gaps= 0 total=43123 # 1dd9A.372.286 read from T0547.t2k.many.frag # found chain 1dd9A in training set T0547 372 :SNALEYLHD 1dd9A 382 :LSTPDGRAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43124 # 1ucdA.372.74 read from T0547.t2k.many.frag # found chain 1ucdA in training set T0547 372 :SNALEYLHD 1ucdA 75 :ANNQQFWSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=43125 # 1z9hA.372.182 read from T0547.t2k.many.frag # found chain 1z9hA in template set T0547 372 :SNALEYLHD 1z9hA 270 :FGAVEGAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43126 # 1l0bA.372.204 read from T0547.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)Y377 (1l0bA)Y1798 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 because last residue in template chain is (1l0bA)Q1801 T0547 372 :SNALE 1l0bA 1793 :RDLDA T0547 378 :LH 1l0bA 1799 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=43128 # 2bduA.372.210 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)N373 (2bduA)N212 because G (3-10) conformation "forbidden" or filtered. T0547 372 :S 2bduA 211 :F T0547 374 :ALEYLHD 2bduA 213 :KHDGALK Number of specific fragments extracted= 2 number of extra gaps= 1 total=43130 # 1k87A.372.574 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 372 :SNALEYLHD 1k87A 575 :LPLDELVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43131 # 1ydiA.372.155 read from T0547.t2k.many.frag # found chain 1ydiA in training set T0547 372 :SNALEYLHD 1ydiA 151 :VETMEDLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43132 # 1mkfA.372.41 read from T0547.t2k.many.frag # found chain 1mkfA in template set T0547 372 :SNALEYLHD 1mkfA 42 :TEVTECAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43133 # 1g60A.372.43 read from T0547.t2k.many.frag # found chain 1g60A in template set T0547 372 :SNALEYLHD 1g60A 44 :DSHNEFLAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=43134 1ra6A expands to /projects/compbio/data/pdb/1ra6.pdb.gz 1ra6A:Bad short name: AS for alphabet: pdb_atoms Bad short name: AS for alphabet: pdb_atoms Bad short name: AS for alphabet: pdb_atoms Bad short name: AS for alphabet: pdb_atoms # 1ra6A.372.67 read from T0547.t2k.many.frag # adding 1ra6A to template set # found chain 1ra6A in template set Warning: unaligning (T0547)A374 (1ra6A)V70 because P (beta_P) conformation "forbidden" or filtered. T0547 372 :SN 1ra6A 68 :TE T0547 375 :LEYLHD 1ra6A 71 :DEYMKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=43136 # 1e7lA.372.74 read from T0547.t2k.many.frag # found chain 1e7lA in training set Warning: unaligning (T0547)N373 (1e7lA)G76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L378 (1e7lA)G81 because T (delta_L) conformation "forbidden" or filtered. T0547 372 :S 1e7lA 75 :S T0547 374 :ALEY 1e7lA 77 :LKGQ T0547 379 :HD 1e7lA 82 :VD Number of specific fragments extracted= 3 number of extra gaps= 2 total=43139 # 1x38A.372.224 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 372 :SNALEYLHD 1x38A 225 :INREGLMNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43140 # 2bptA.372.737 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 372 :SNALEYLHD 2bptA 738 :NGTLEALDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43141 # 1jr8A.372.69 read from T0547.t2k.many.frag # found chain 1jr8A in training set T0547 372 :SNALEYLHD 1jr8A 73 :SSRTAAAMW Number of specific fragments extracted= 1 number of extra gaps= 0 total=43142 # 1j77A.372.35 read from T0547.t2k.many.frag # found chain 1j77A in training set Warning: unaligning (T0547)A374 (1j77A)S38 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :SN 1j77A 36 :FV T0547 375 :LEYLHD 1j77A 39 :KENYIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=43144 # 1f9vA.372.250 read from T0547.t2k.many.frag # found chain 1f9vA in training set Warning: unaligning (T0547)L378 (1f9vA)V639 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :SNALEY 1f9vA 633 :INVSQV T0547 379 :HD 1f9vA 640 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=43146 # 1cl8A.372.138 read from T0547.t2k.many.frag # found chain 1cl8A in training set T0547 372 :SNALEYLHD 1cl8A 140 :GNAIERSHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43147 # 7odcA.372.342 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E376 (7odcA)D347 because L (left) conformation "forbidden" or filtered. T0547 372 :SNAL 7odcA 343 :RPKP T0547 377 :YLHD 7odcA 348 :EKYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=43149 # 1iicA.372.71 read from T0547.t2k.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)N373 (1iicA)D106 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :S 1iicA 105 :E T0547 374 :ALEYLHD 1iicA 107 :RDAGFRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=43151 1okcA expands to /projects/compbio/data/pdb/1okc.pdb.gz 1okcA:# 1okcA.372.43 read from T0547.t2k.many.frag # adding 1okcA to template set # found chain 1okcA in template set T0547 372 :SNALEYLHD 1okcA 44 :ISAEKQYKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43152 # 1h8eA.373.289 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)L375 (1h8eA)E292 because L (left) conformation "forbidden" or filtered. T0547 373 :NA 1h8eA 290 :GR T0547 376 :EYLHDS 1h8eA 293 :AYPGDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=43154 # 1ijbA.373.179 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 373 :NALEYLHDS 1ijbA 679 :SVDELEQQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43155 # 1ash.373.18 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 373 :NALEYLHDS 1ash 18 :TSNEARQDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43156 # 1j7xA.373.79 read from T0547.t2k.many.frag # found chain 1j7xA in training set T0547 373 :NALEYLHDS 1j7xA 81 :QAENIPEDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43157 # 1t3gA.373.137 read from T0547.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0547)A374 (1t3gA)G541 because Y (epsilon') conformation "forbidden" or filtered. T0547 373 :N 1t3gA 540 :H T0547 375 :LEYLHDS 1t3gA 542 :PKCNKLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=43159 # 1x38A.373.225 read from T0547.t2k.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)N373 (1x38A)N226 because P (beta_P) conformation "forbidden" or filtered. T0547 374 :ALEYLHDS 1x38A 227 :REGLMNIH Number of specific fragments extracted= 1 number of extra gaps= 1 total=43160 # 2bptA.373.277 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 373 :NALEYLHDS 2bptA 278 :PNDKVASMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43161 # 1q52A.373.234 read from T0547.t2k.many.frag # found chain 1q52A in training set T0547 373 :NALEYLHDS 1q52A 235 :EHAELETVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43162 # 1z7lA.373.86 read from T0547.t2k.many.frag # found chain 1z7lA in template set T0547 373 :NALEYLHDS 1z7lA 702 :TWGDCVTWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43163 # 1mixA.373.95 read from T0547.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)N373 (1mixA)S290 because P (beta_P) conformation "forbidden" or filtered. T0547 374 :ALEYLHDS 1mixA 291 :EIEAKVRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=43164 # 1k87A.373.575 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 373 :NALEYLHDS 1k87A 576 :PLDELVADP Number of specific fragments extracted= 1 number of extra gaps= 0 total=43165 1zupA expands to /projects/compbio/data/pdb/1zup.pdb.gz 1zupA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 137, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 139, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 141, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 143, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 145, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 147, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 149, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 151, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 153, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 827, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 829, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 831, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 833, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 835, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 837, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 839, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 841, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 843, because occupancy 0.500 <= existing 0.500 in 1zupA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1181, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 1183, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 1185, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 1187, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 1189, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 1191, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 1193, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 1195, because occupancy 0.500 <= existing 0.500 in 1zupA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2160, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2162, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2164, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2166, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2168, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2170, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2172, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2174, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2176, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2178, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2180, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2182, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2184, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2186, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2188, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2190, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2192, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2194, because occupancy 0.500 <= existing 0.500 in 1zupA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zupA.373.249 read from T0547.t2k.many.frag # adding 1zupA to template set # found chain 1zupA in template set T0547 373 :NALEYLHDS 1zupA 238 :KDDNQIPYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43166 # 1g60A.373.44 read from T0547.t2k.many.frag # found chain 1g60A in template set Warning: unaligning (T0547)N373 (1g60A)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 374 :ALEYLHDS 1g60A 46 :HNEFLAFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=43167 # 1okcA.373.44 read from T0547.t2k.many.frag # found chain 1okcA in template set Warning: unaligning (T0547)N373 (1okcA)S45 because P (beta_P) conformation "forbidden" or filtered. T0547 374 :ALEYLHDS 1okcA 46 :AEKQYKGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=43168 # 2bduA.373.211 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 373 :NALEYLHDS 2bduA 212 :NKHDGALKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=43169 # 1dd9A.373.287 read from T0547.t2k.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)A374 (1dd9A)T384 because E (beta_S) conformation "forbidden" or filtered. T0547 373 :N 1dd9A 383 :S T0547 375 :LEYLHDS 1dd9A 385 :PDGRARL Number of specific fragments extracted= 2 number of extra gaps= 1 total=43171 # 1v54C.373.124 read from T0547.t2k.many.frag # found chain 1v54C in training set Warning: unaligning (T0547)N373 (1v54C)N125 because P (beta_P) conformation "forbidden" or filtered. T0547 374 :ALEYLHDS 1v54C 126 :PLEVPLLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=43172 # 1ra6A.373.68 read from T0547.t2k.many.frag # found chain 1ra6A in template set T0547 373 :NALEYLHDS 1ra6A 69 :EVDEYMKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43173 # 2bptA.373.556 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 373 :NALEYLHDS 2bptA 557 :DENQLTLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=43174 # 7odcA.373.343 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N373 (7odcA)P344 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (7odcA)D347 because L (left) conformation "forbidden" or filtered. T0547 374 :AL 7odcA 345 :KP T0547 377 :YLHDS 7odcA 348 :EKYYS Number of specific fragments extracted= 2 number of extra gaps= 2 total=43176 # 1cl8A.373.139 read from T0547.t2k.many.frag # found chain 1cl8A in training set T0547 373 :NALEYLHDS 1cl8A 141 :NAIERSHKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=43177 # 1ydiA.373.156 read from T0547.t2k.many.frag # found chain 1ydiA in training set T0547 373 :NALEYLHDS 1ydiA 152 :ETMEDLVTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43178 # 1z9hA.373.183 read from T0547.t2k.many.frag # found chain 1z9hA in template set T0547 373 :NALEYLHDS 1z9hA 271 :GAVEGAVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43179 # 1mkfA.373.42 read from T0547.t2k.many.frag # found chain 1mkfA in template set T0547 373 :NALEYLHDS 1mkfA 43 :EVTECAGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43180 # 2bptA.373.738 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 373 :NALEYLHDS 2bptA 739 :GTLEALDYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43181 # 1wvfA.373.251 read from T0547.t2k.many.frag # found chain 1wvfA in training set T0547 373 :NALEYLHDS 1wvfA 253 :EDEADIVEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43182 # 1jr8A.373.70 read from T0547.t2k.many.frag # found chain 1jr8A in training set Warning: unaligning (T0547)N373 (1jr8A)S74 because Y (epsilon') conformation "forbidden" or filtered. T0547 374 :ALEYLHDS 1jr8A 75 :RTAAAMWG Number of specific fragments extracted= 1 number of extra gaps= 1 total=43183 # 1lfpA.373.209 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 373 :NALEYLHDS 1lfpA 210 :NDEETAQKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43184 # 1ig0A.373.193 read from T0547.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0547)N373 (1ig0A)G194 because Y (epsilon') conformation "forbidden" or filtered. T0547 374 :ALEYLHDS 1ig0A 195 :RFDQTVHS Number of specific fragments extracted= 1 number of extra gaps= 1 total=43185 # 1hbkA.373.71 read from T0547.t2k.many.frag # found chain 1hbkA in template set T0547 373 :NALEYL 1hbkA 67 :NREDAQ T0547 380 :DS 1hbkA 73 :KR Number of specific fragments extracted= 2 number of extra gaps= 0 total=43187 # 1h8eA.374.290 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)L375 (1h8eA)E292 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1h8eA)A293 because T (delta_L) conformation "forbidden" or filtered. T0547 374 :A 1h8eA 291 :R T0547 377 :YLHDSI 1h8eA 294 :YPGDVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=43189 # 1ash.374.19 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 374 :ALEYLHDSI 1ash 19 :SNEARQDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43190 # 1ijbA.374.180 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 374 :ALEYLHDSI 1ijbA 680 :VDELEQQRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43191 # 1t3gA.374.138 read from T0547.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0547)A374 (1t3gA)G541 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1t3gA)N548 because L (left) conformation "forbidden" or filtered. T0547 375 :LEYLHD 1t3gA 542 :PKCNKL T0547 382 :I 1t3gA 549 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=43193 # 1j7xA.374.80 read from T0547.t2k.many.frag # found chain 1j7xA in training set T0547 374 :ALEYLHDSI 1j7xA 82 :AENIPEDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43194 # 2bptA.374.278 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 374 :ALEYLHDSI 2bptA 279 :NDKVASMTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43195 # 1x38A.374.226 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 374 :ALEYLHDSI 1x38A 227 :REGLMNIHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=43196 # 7odcA.374.344 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E376 (7odcA)D347 because L (left) conformation "forbidden" or filtered. T0547 374 :AL 7odcA 345 :KP T0547 377 :YLHDSI 7odcA 348 :EKYYSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=43198 # 1q52A.374.235 read from T0547.t2k.many.frag # found chain 1q52A in training set T0547 374 :ALEYLHDSI 1q52A 236 :HAELETVGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43199 # 1z7lA.374.87 read from T0547.t2k.many.frag # found chain 1z7lA in template set T0547 374 :ALEYLHDSI 1z7lA 703 :WGDCVTWAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=43200 # 1mixA.374.96 read from T0547.t2k.many.frag # found chain 1mixA in training set T0547 374 :ALEYLHDSI 1mixA 291 :EIEAKVRYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43201 # 1v54C.374.125 read from T0547.t2k.many.frag # found chain 1v54C in training set T0547 374 :ALEYLHDSI 1v54C 126 :PLEVPLLNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43202 # 1k87A.374.576 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 374 :ALEYLHDSI 1k87A 577 :LDELVADPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43203 # 1okcA.374.45 read from T0547.t2k.many.frag # found chain 1okcA in template set T0547 374 :ALEYLHDSI 1okcA 46 :AEKQYKGII Number of specific fragments extracted= 1 number of extra gaps= 0 total=43204 # 1g60A.374.45 read from T0547.t2k.many.frag # found chain 1g60A in template set T0547 374 :ALEYLHDSI 1g60A 46 :HNEFLAFTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43205 # 1zupA.374.250 read from T0547.t2k.many.frag # found chain 1zupA in template set T0547 374 :ALEYLHDSI 1zupA 239 :DDNQIPYIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43206 # 2bduA.374.212 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 374 :ALEYLHDSI 2bduA 213 :KHDGALKNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43207 # 1dd9A.374.288 read from T0547.t2k.many.frag # found chain 1dd9A in training set T0547 374 :ALEYLHDSI 1dd9A 384 :TPDGRARLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43208 # 1knwA.374.326 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 374 :ALEYLHDSI 1knwA 327 :LEHAPTVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=43209 # 1lfpA.374.210 read from T0547.t2k.many.frag # found chain 1lfpA in training set Warning: unaligning (T0547)A374 (1lfpA)D211 because P (beta_P) conformation "forbidden" or filtered. T0547 375 :LEYLHDSI 1lfpA 212 :EETAQKVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=43210 # 2bptA.374.557 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 374 :ALEYLHDSI 2bptA 558 :ENQLTLEDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43211 # 2bptA.374.739 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 374 :ALEYLHDSI 2bptA 740 :TLEALDYQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43212 # 1cl8A.374.140 read from T0547.t2k.many.frag # found chain 1cl8A in training set T0547 374 :ALEYLHDSI 1cl8A 142 :AIERSHKNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43213 # 1jr8A.374.71 read from T0547.t2k.many.frag # found chain 1jr8A in training set T0547 374 :ALEYLHDSI 1jr8A 75 :RTAAAMWGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=43214 # 1ra6A.374.69 read from T0547.t2k.many.frag # found chain 1ra6A in template set T0547 374 :ALEYLHDSI 1ra6A 70 :VDEYMKEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43215 # 1ig0A.374.194 read from T0547.t2k.many.frag # found chain 1ig0A in training set T0547 374 :ALEYLHDSI 1ig0A 195 :RFDQTVHSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43216 # 1ydiA.374.157 read from T0547.t2k.many.frag # found chain 1ydiA in training set T0547 374 :ALEYLHDSI 1ydiA 153 :TMEDLVTYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43217 1wurA expands to /projects/compbio/data/pdb/1wur.pdb.gz 1wurA:# 1wurA.374.54 read from T0547.t2k.many.frag # adding 1wurA to template set # found chain 1wurA in template set T0547 374 :ALEYLHDSI 1wurA 55 :REGLLKTPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43218 # 2bvlA.374.217 read from T0547.t2k.many.frag # found chain 2bvlA in template set T0547 374 :ALEYLHDSI 2bvlA 218 :IDELNTYIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43219 # 1z9hA.374.184 read from T0547.t2k.many.frag # found chain 1z9hA in template set T0547 374 :ALEYLHDSI 1z9hA 272 :AVEGAVAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43220 # 1h8eA.375.291 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)L375 (1h8eA)E292 because L (left) conformation "forbidden" or filtered. T0547 376 :EYLHDSID 1h8eA 293 :AYPGDVFY Number of specific fragments extracted= 1 number of extra gaps= 1 total=43221 # 1ash.375.20 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 375 :LEYLHDSID 1ash 20 :NEARQDGID Number of specific fragments extracted= 1 number of extra gaps= 0 total=43222 # 1t3gA.375.139 read from T0547.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0547)S381 (1t3gA)N548 because L (left) conformation "forbidden" or filtered. T0547 375 :LEYLHD 1t3gA 542 :PKCNKL T0547 382 :ID 1t3gA 549 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=43224 # 7odcA.375.345 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E376 (7odcA)D347 because L (left) conformation "forbidden" or filtered. T0547 375 :L 7odcA 346 :P T0547 377 :YLHDSID 7odcA 348 :EKYYSSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=43226 # 1ijbA.375.181 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 375 :LEYLHDSID 1ijbA 681 :DELEQQRDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43227 # 2bptA.375.279 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 375 :LEYLHDSID 2bptA 280 :DKVASMTVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43228 # 1j7xA.375.81 read from T0547.t2k.many.frag # found chain 1j7xA in training set T0547 375 :LEYLHDSID 1j7xA 83 :ENIPEDEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=43229 # 1knwA.375.327 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)D383 (1knwA)V336 because P (beta_P) conformation "forbidden" or filtered. T0547 375 :LEYLHDSI 1knwA 328 :EHAPTVET Number of specific fragments extracted= 1 number of extra gaps= 1 total=43230 # 1x38A.375.227 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 375 :LEYLHDSID 1x38A 228 :EGLMNIHMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=43231 # 1q52A.375.236 read from T0547.t2k.many.frag # found chain 1q52A in training set T0547 375 :LEYLHDSID 1q52A 237 :AELETVGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43232 # 1v54C.375.126 read from T0547.t2k.many.frag # found chain 1v54C in training set T0547 375 :LEYLHDSID 1v54C 127 :LEVPLLNTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43233 # 1lfpA.375.211 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 375 :LEYLHDSID 1lfpA 212 :EETAQKVIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43234 # 1dd9A.375.289 read from T0547.t2k.many.frag # found chain 1dd9A in training set T0547 375 :LEYLHDSID 1dd9A 385 :PDGRARLST Number of specific fragments extracted= 1 number of extra gaps= 0 total=43235 # 1k87A.375.577 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 375 :LEYLHDSID 1k87A 578 :DELVADPVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43236 # 2bptA.375.558 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 375 :LEYLHDSID 2bptA 559 :NQLTLEDAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43237 # 1uq5A.375.230 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)Y377 (1uq5A)G237 because T (delta_L) conformation "forbidden" or filtered. T0547 375 :LE 1uq5A 235 :RN T0547 378 :LHDSID 1uq5A 238 :SKFSVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=43239 # 1g60A.375.46 read from T0547.t2k.many.frag # found chain 1g60A in template set T0547 375 :LEYLHDSID 1g60A 47 :NEFLAFTYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43240 # 1p7tA.375.511 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 375 :LEYLHDSID 1p7tA 512 :PDLMADMYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43241 # 1okcA.375.46 read from T0547.t2k.many.frag # found chain 1okcA in template set Warning: unaligning (T0547)D380 (1okcA)G52 because Y (epsilon') conformation "forbidden" or filtered. T0547 375 :LEYLH 1okcA 47 :EKQYK T0547 381 :SID 1okcA 53 :IID Number of specific fragments extracted= 2 number of extra gaps= 1 total=43243 # 1mixA.375.97 read from T0547.t2k.many.frag # found chain 1mixA in training set T0547 375 :LEYLHDSID 1mixA 292 :IEAKVRYVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43244 # 2bduA.375.213 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 375 :LEYLHDSID 2bduA 214 :HDGALKNTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43245 # 1ig0A.375.195 read from T0547.t2k.many.frag # found chain 1ig0A in training set T0547 375 :LEYLHDSID 1ig0A 196 :FDQTVHSIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43246 # 1cl8A.375.141 read from T0547.t2k.many.frag # found chain 1cl8A in training set T0547 375 :LEYLHDSID 1cl8A 143 :IERSHKNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43247 # 1z7lA.375.88 read from T0547.t2k.many.frag # found chain 1z7lA in template set T0547 375 :LEYLHDSID 1z7lA 704 :GDCVTWACH Number of specific fragments extracted= 1 number of extra gaps= 0 total=43248 # 1e0tA.375.317 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0547 379 :HDSID 1e0tA 322 :LEAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43249 # 1zupA.375.251 read from T0547.t2k.many.frag # found chain 1zupA in template set T0547 375 :LEYLHDSID 1zupA 240 :DNQIPYIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43250 # 1jr8A.375.72 read from T0547.t2k.many.frag # found chain 1jr8A in training set T0547 375 :LEYLHDSID 1jr8A 76 :TAAAMWGCH Number of specific fragments extracted= 1 number of extra gaps= 0 total=43251 # 1txlA.375.53 read from T0547.t2k.many.frag # found chain 1txlA in training set Warning: unaligning (T0547)H379 (1txlA)D58 because P (beta_P) conformation "forbidden" or filtered. T0547 375 :LEYL 1txlA 54 :LSDW T0547 380 :DSID 1txlA 59 :GVWQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=43253 # 1g6sA.375.334 read from T0547.t2k.many.frag # found chain 1g6sA in training set Warning: unaligning (T0547)D380 (1g6sA)K340 because Y (epsilon') conformation "forbidden" or filtered. T0547 375 :LEYLH 1g6sA 335 :YNWRV T0547 381 :SID 1g6sA 341 :ETD Number of specific fragments extracted= 2 number of extra gaps= 1 total=43255 # 1pjr.375.225 read from T0547.t2k.many.frag # found chain 1pjr in template set T0547 375 :LEYLHDSID 1pjr 226 :QDTNRAQYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43256 # 1h8eA.376.292 read from T0547.t2k.many.frag # found chain 1h8eA in template set T0547 376 :EYLHDSIDH 1h8eA 293 :AYPGDVFYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43257 # 7odcA.376.346 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E376 (7odcA)D347 because L (left) conformation "forbidden" or filtered. T0547 377 :YLHDSIDH 7odcA 348 :EKYYSSSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=43258 # 1ash.376.21 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 376 :EYLHDSIDH 1ash 21 :EARQDGIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43259 # 1ijbA.376.182 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 376 :EYLHDSIDH 1ijbA 682 :ELEQQRDEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43260 # 1knwA.376.328 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 376 :EYLHDSIDH 1knwA 329 :HAPTVETVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43261 # 1t3gA.376.140 read from T0547.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0547)S381 (1t3gA)N548 because L (left) conformation "forbidden" or filtered. T0547 376 :EYLHD 1t3gA 543 :KCNKL T0547 382 :IDH 1t3gA 549 :SKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=43263 # 2bptA.376.280 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 376 :EYLHDSIDH 2bptA 281 :KVASMTVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=43264 # 1j7xA.376.82 read from T0547.t2k.many.frag # found chain 1j7xA in training set T0547 376 :EYLHDSIDH 1j7xA 84 :NIPEDEAML Number of specific fragments extracted= 1 number of extra gaps= 0 total=43265 # 1lfpA.376.212 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 376 :EYLHDSIDH 1lfpA 213 :ETAQKVIKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43266 # 1e0tA.376.318 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0547 379 :HDSIDH 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43267 # 1dd9A.376.290 read from T0547.t2k.many.frag # found chain 1dd9A in training set T0547 376 :EYLHDSIDH 1dd9A 386 :DGRARLSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43268 # 1uq5A.376.231 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)Y377 (1uq5A)G237 because T (delta_L) conformation "forbidden" or filtered. T0547 376 :E 1uq5A 236 :N T0547 378 :LHDSIDH 1uq5A 238 :SKFSVYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=43270 # 1jr8A.376.73 read from T0547.t2k.many.frag # found chain 1jr8A in training set T0547 376 :EYLHDSIDH 1jr8A 77 :AAAMWGCHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43271 # 1k87A.376.578 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 376 :EYLHDSIDH 1k87A 579 :ELVADPVTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43272 # 1v54C.376.127 read from T0547.t2k.many.frag # found chain 1v54C in training set T0547 376 :EYLHDSIDH 1v54C 128 :EVPLLNTSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43273 # 2bduA.376.214 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 376 :EYLHDSIDH 2bduA 215 :DGALKNTDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43274 # 1pjr.376.226 read from T0547.t2k.many.frag # found chain 1pjr in template set T0547 376 :EYLHDSIDH 1pjr 227 :DTNRAQYTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43275 1dxrC expands to /projects/compbio/data/pdb/1dxr.pdb.gz 1dxrC:Skipped atom 640, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 641, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 642, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 643, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 644, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 645, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 646, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 647, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 648, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 720, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 721, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 722, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 723, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 724, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 725, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 726, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 727, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 728, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 976, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 977, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 978, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 979, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 980, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 981, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 982, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 983, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 984, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 1602, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 1603, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 1604, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 1605, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 1606, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 1607, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 1608, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 1609, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 1610, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 1611, because occupancy 0.500 <= existing 0.500 in 1dxrC Skipped atom 1612, because occupancy 0.500 <= existing 0.500 in 1dxrC # 1dxrC.376.97 read from T0547.t2k.many.frag # adding 1dxrC to template set # found chain 1dxrC in template set T0547 376 :EYLHDSIDH 1dxrC 98 :SEAKYPYVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43276 # 1q52A.376.237 read from T0547.t2k.many.frag # found chain 1q52A in training set T0547 376 :EYLHDSIDH 1q52A 238 :ELETVGLQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=43277 # 1x38A.376.228 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 376 :EYLHDSIDH 1x38A 229 :GLMNIHMPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43278 # 1iicA.376.233 read from T0547.t2k.many.frag # found chain 1iicA in template set T0547 376 :EYLHDSIDH 1iicA 267 :EDIDQVFEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43279 # 2bkxA.376.148 read from T0547.t2k.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D380 (2bkxA)H153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (2bkxA)V154 because P (beta_P) conformation "forbidden" or filtered. T0547 376 :EYLH 2bkxA 149 :KSRT T0547 382 :IDH 2bkxA 155 :VTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=43281 # 1p7tA.376.512 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 376 :EYLHDSIDH 1p7tA 513 :DLMADMYSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43282 # 1g60A.376.47 read from T0547.t2k.many.frag # found chain 1g60A in template set T0547 376 :EYLHDSIDH 1g60A 48 :EFLAFTYRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=43283 # 1ig0A.376.196 read from T0547.t2k.many.frag # found chain 1ig0A in training set T0547 376 :EYLHDSIDH 1ig0A 197 :DQTVHSITQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43284 # 1zupA.376.252 read from T0547.t2k.many.frag # found chain 1zupA in template set T0547 376 :EYLHDSIDH 1zupA 241 :NQIPYIRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43285 # 2bptA.376.559 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 376 :EYLHDSIDH 2bptA 560 :QLTLEDAQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43286 # 1g6sA.376.335 read from T0547.t2k.many.frag # found chain 1g6sA in training set Warning: unaligning (T0547)D380 (1g6sA)K340 because Y (epsilon') conformation "forbidden" or filtered. T0547 376 :EYLH 1g6sA 336 :NWRV T0547 381 :SIDH 1g6sA 341 :ETDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=43288 # 2a9sA.376.62 read from T0547.t2k.many.frag # found chain 2a9sA in training set Warning: unaligning (T0547)D383 (2a9sA)G68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (2a9sA)V69 because P (beta_P) conformation "forbidden" or filtered. T0547 376 :EYLHDSI 2a9sA 61 :DAKRDML Number of specific fragments extracted= 1 number of extra gaps= 1 total=43289 # 1azo.376.107 read from T0547.t2k.many.frag # found chain 1azo in training set Warning: unaligning (T0547)E376 (1azo)G105 because T (delta_L) conformation "forbidden" or filtered. T0547 377 :YLHDSIDH 1azo 106 :VTWETSHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=43290 # 7odcA.377.347 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 377 :YLHDSIDHL 7odcA 348 :EKYYSSSIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=43291 # 1h8eA.377.293 read from T0547.t2k.many.frag # found chain 1h8eA in template set T0547 377 :YLHDSIDHL 1h8eA 294 :YPGDVFYLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=43292 # 1knwA.377.329 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 377 :YLHDSIDHL 1knwA 330 :APTVETVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43293 # 1ash.377.22 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 377 :YLHDSIDHL 1ash 22 :ARQDGIDLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43294 # 2bptA.377.281 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 377 :YLHDSIDHL 2bptA 282 :VASMTVEFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=43295 # 1ijbA.377.183 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 377 :YLHDSIDHL 1ijbA 683 :LEQQRDEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43296 # 1t3gA.377.141 read from T0547.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0547)S381 (1t3gA)N548 because L (left) conformation "forbidden" or filtered. T0547 377 :YLHD 1t3gA 544 :CNKL T0547 382 :IDHL 1t3gA 549 :SKFW Number of specific fragments extracted= 2 number of extra gaps= 1 total=43298 # 1j7xA.377.83 read from T0547.t2k.many.frag # found chain 1j7xA in training set T0547 377 :YLHDSIDHL 1j7xA 85 :IPEDEAMLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43299 # 1e0tA.377.319 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0547 379 :HDSIDHL 1e0tA 322 :LEAVSIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=43300 # 1dxrC.377.98 read from T0547.t2k.many.frag # found chain 1dxrC in template set T0547 377 :YLHDSIDHL 1dxrC 99 :EAKYPYVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43301 # 1lfpA.377.213 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 377 :YLHDSIDHL 1lfpA 214 :TAQKVIKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43302 # 1dd9A.377.291 read from T0547.t2k.many.frag # found chain 1dd9A in training set T0547 377 :YLHDSIDHL 1dd9A 387 :GRARLSTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43303 # 1k87A.377.579 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 377 :YLHDSIDHL 1k87A 580 :LVADPVTAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43304 # 1uq5A.377.232 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)H384 (1uq5A)D244 because Y (epsilon') conformation "forbidden" or filtered. T0547 377 :YLHDSID 1uq5A 237 :GSKFSVY T0547 385 :L 1uq5A 245 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=43306 # 1p7tA.377.513 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 377 :YLHDSIDHL 1p7tA 514 :LMADMYSQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43307 # 1v54C.377.128 read from T0547.t2k.many.frag # found chain 1v54C in training set T0547 377 :YLHDSIDHL 1v54C 129 :VPLLNTSVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43308 # 1pjr.377.227 read from T0547.t2k.many.frag # found chain 1pjr in template set T0547 377 :YLHDSIDHL 1pjr 228 :TNRAQYTLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43309 # 2bduA.377.215 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 377 :YLHDSIDHL 2bduA 216 :GALKNTDYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=43310 # 1jr8A.377.74 read from T0547.t2k.many.frag # found chain 1jr8A in training set T0547 377 :YLHDSIDHL 1jr8A 78 :AAMWGCHIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=43311 # 2bkxA.377.149 read from T0547.t2k.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)H379 (2bkxA)T152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (2bkxA)T156 because P (beta_P) conformation "forbidden" or filtered. T0547 377 :YL 2bkxA 150 :SR T0547 380 :DSI 2bkxA 153 :HVV T0547 384 :HL 2bkxA 157 :LN Number of specific fragments extracted= 3 number of extra gaps= 2 total=43314 # 1e2kA.377.261 read from T0547.t2k.many.frag # found chain 1e2kA in training set T0547 377 :YLHDSIDHL 1e2kA 307 :VFAWALDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43315 # 1iicA.377.234 read from T0547.t2k.many.frag # found chain 1iicA in template set T0547 377 :YLHDSIDHL 1iicA 268 :DIDQVFELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=43316 # 1x38A.377.229 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 377 :YLHDSIDHL 1x38A 230 :LMNIHMPAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43317 # 1vkhA.377.192 read from T0547.t2k.many.frag # found chain 1vkhA in template set T0547 377 :YLHDSIDHL 1vkhA 181 :YEEEPSRVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=43318 # 1ho8A.377.388 read from T0547.t2k.many.frag # found chain 1ho8A in template set Warning: unaligning (T0547)S381 (1ho8A)N391 because L (left) conformation "forbidden" or filtered. T0547 377 :YLHD 1ho8A 387 :FKKD T0547 382 :IDHL 1ho8A 392 :YKIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=43320 # 2a9sA.377.63 read from T0547.t2k.many.frag # found chain 2a9sA in training set Warning: unaligning (T0547)D383 (2a9sA)G68 because L (left) conformation "forbidden" or filtered. T0547 377 :YLHDSI 2a9sA 62 :AKRDML T0547 384 :HL 2a9sA 69 :VG Number of specific fragments extracted= 2 number of extra gaps= 1 total=43322 # 1jl0A.377.121 read from T0547.t2k.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)D380 (1jl0A)Y125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1jl0A)P126 because C (cis) conformation "forbidden" or filtered. T0547 377 :YLH 1jl0A 122 :HQG T0547 382 :IDHL 1jl0A 127 :HRNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=43324 1gpc expands to /projects/compbio/data/pdb/1gpc.pdb.gz 1gpc:Warning: there is no chain 1gpc will retry with 1gpcA # 1gpc.377.110 read from T0547.t2k.many.frag # adding 1gpc to template set # found chain 1gpc in template set Warning: unaligning (T0547)D380 (1gpc)F135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L385 (1gpc)G140 because Y (epsilon') conformation "forbidden" or filtered. T0547 377 :YLH 1gpc 132 :GKV T0547 381 :SIDH 1gpc 136 :KYRF Number of specific fragments extracted= 2 number of extra gaps= 2 total=43326 # 1ig0A.377.197 read from T0547.t2k.many.frag # found chain 1ig0A in training set T0547 377 :YLHDSIDHL 1ig0A 198 :QTVHSITQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43327 # 1azo.377.108 read from T0547.t2k.many.frag # found chain 1azo in training set T0547 377 :YLHDSIDHL 1azo 106 :VTWETSHVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43328 # 7odcA.378.348 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 378 :LHDSIDHLE 7odcA 349 :KYYSSSIWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43329 # 1h8eA.378.294 read from T0547.t2k.many.frag # found chain 1h8eA in template set T0547 378 :LHDSIDHLE 1h8eA 295 :PGDVFYLHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43330 # 1knwA.378.330 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)D380 (1knwA)V333 because E (beta_S) conformation "forbidden" or filtered. T0547 378 :LH 1knwA 331 :PT T0547 381 :SIDHLE 1knwA 334 :ETVVAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=43332 # 1ash.378.23 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 378 :LHDSIDHLE 1ash 23 :RQDGIDLYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43333 # 1ijbA.378.184 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 378 :LHDSIDHLE 1ijbA 684 :EQQRDEIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43334 # 2bptA.378.282 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 378 :LHDSIDHLE 2bptA 283 :ASMTVEFWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43335 # 1t3gA.378.142 read from T0547.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0547)S381 (1t3gA)N548 because L (left) conformation "forbidden" or filtered. T0547 378 :LHD 1t3gA 545 :NKL T0547 382 :IDHLE 1t3gA 549 :SKFWK Number of specific fragments extracted= 2 number of extra gaps= 1 total=43337 # 1e0tA.378.320 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0547 379 :HDSIDHLE 1e0tA 322 :LEAVSIMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43338 # 1dxrC.378.99 read from T0547.t2k.many.frag # found chain 1dxrC in template set T0547 378 :LHDSIDHLE 1dxrC 100 :AKYPYVVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43339 # 1j7xA.378.84 read from T0547.t2k.many.frag # found chain 1j7xA in training set T0547 378 :LHDSIDHLE 1j7xA 86 :PEDEAMLQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43340 # 1lfpA.378.214 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 378 :LHDSIDHLE 1lfpA 215 :AQKVIKLLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=43341 # 1k87A.378.580 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 378 :LHDSIDHLE 1k87A 581 :VADPVTAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43342 # 1p7tA.378.514 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 378 :LHDSIDHLE 1p7tA 515 :MADMYSQKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43343 # 1iicA.378.235 read from T0547.t2k.many.frag # found chain 1iicA in template set T0547 378 :LHDSIDHLE 1iicA 269 :IDQVFELFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43344 # 1e2kA.378.262 read from T0547.t2k.many.frag # found chain 1e2kA in training set T0547 378 :LHDSIDHLE 1e2kA 308 :FAWALDVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43345 # 1dd9A.378.292 read from T0547.t2k.many.frag # found chain 1dd9A in training set T0547 378 :LHDSIDHLE 1dd9A 388 :RARLSTLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43346 # 1bf5A.378.152 read from T0547.t2k.many.frag # found chain 1bf5A in template set T0547 378 :LHDSIDHLE 1bf5A 302 :WDRTFSLFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43347 # 2bduA.378.216 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 378 :LHDSIDHLE 2bduA 217 :ALKNTDYFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43348 # 1pjr.378.228 read from T0547.t2k.many.frag # found chain 1pjr in template set T0547 378 :LHDSIDHLE 1pjr 229 :NRAQYTLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43349 # 1uq5A.378.233 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)H384 (1uq5A)D244 because Y (epsilon') conformation "forbidden" or filtered. T0547 378 :LHDSID 1uq5A 238 :SKFSVY T0547 385 :LE 1uq5A 245 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=43351 # 2bkxA.378.150 read from T0547.t2k.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D380 (2bkxA)H153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (2bkxA)L157 because P (beta_P) conformation "forbidden" or filtered. T0547 378 :LH 2bkxA 151 :RT T0547 381 :SID 2bkxA 154 :VVT T0547 385 :LE 2bkxA 158 :NE Number of specific fragments extracted= 3 number of extra gaps= 2 total=43354 # 1jr8A.378.75 read from T0547.t2k.many.frag # found chain 1jr8A in training set T0547 378 :LHDSIDHLE 1jr8A 79 :AMWGCHIHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=43355 1g5hA expands to /projects/compbio/data/pdb/1g5h.pdb.gz 1g5hA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1g5hA.378.353 read from T0547.t2k.many.frag # adding 1g5hA to template set # found chain 1g5hA in template set T0547 378 :LHDSIDHLE 1g5hA 370 :RQVCQGLLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=43356 # 1v54C.378.129 read from T0547.t2k.many.frag # found chain 1v54C in training set T0547 378 :LHDSIDHLE 1v54C 130 :PLLNTSVLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43357 # 1jl0A.378.122 read from T0547.t2k.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)S381 (1jl0A)P126 because C (cis) conformation "forbidden" or filtered. T0547 378 :LHD 1jl0A 123 :QGY T0547 382 :IDHLE 1jl0A 127 :HRNFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=43359 # 1vkhA.378.193 read from T0547.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)H379 (1vkhA)E183 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1vkhA)E184 because P (beta_P) conformation "forbidden" or filtered. T0547 378 :L 1vkhA 182 :E T0547 381 :SIDHLE 1vkhA 185 :PSRVMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=43361 # 1ho8A.378.389 read from T0547.t2k.many.frag # found chain 1ho8A in template set Warning: unaligning (T0547)S381 (1ho8A)N391 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I382 (1ho8A)Y392 because L (left) conformation "forbidden" or filtered. T0547 378 :LHD 1ho8A 388 :KKD T0547 383 :DHLE 1ho8A 393 :KIFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=43363 # 1uq5A.378.199 read from T0547.t2k.many.frag # found chain 1uq5A in training set T0547 378 :LHDSIDHLE 1uq5A 204 :VITLENSWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43364 # 1fn9A.378.190 read from T0547.t2k.many.frag # found chain 1fn9A in training set Warning: unaligning (T0547)S381 (1fn9A)G194 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E386 (1fn9A)G199 because S (epsilon) conformation "forbidden" or filtered. T0547 378 :LHD 1fn9A 191 :AFN T0547 382 :IDHL 1fn9A 195 :VKLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=43366 # 1yvrA.378.293 read from T0547.t2k.many.frag # found chain 1yvrA in template set T0547 378 :LHDSIDHLE 1yvrA 294 :LAPASSEVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43367 # 7odcA.379.349 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 379 :HDSIDHLES 7odcA 350 :YYSSSIWGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=43368 # 1h8eA.379.295 read from T0547.t2k.many.frag # found chain 1h8eA in template set T0547 379 :HDSIDHLES 1h8eA 296 :GDVFYLHSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43369 # 1knwA.379.331 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L385 (1knwA)A338 because Y (epsilon') conformation "forbidden" or filtered. T0547 379 :HDSIDH 1knwA 332 :TVETVV T0547 386 :ES 1knwA 339 :GP Number of specific fragments extracted= 2 number of extra gaps= 1 total=43371 # 1ash.379.24 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 379 :HDSIDHLES 1ash 24 :QDGIDLYKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=43372 # 1ijbA.379.185 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 379 :HDSIDHLES 1ijbA 685 :QQRDEIVSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43373 # 1t3gA.379.143 read from T0547.t2k.many.frag # found chain 1t3gA in template set T0547 379 :HDSIDHLES 1t3gA 546 :KLNSKFWKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43374 # 1e0tA.379.321 read from T0547.t2k.many.frag # found chain 1e0tA in template set T0547 379 :HDSIDHLES 1e0tA 322 :LEAVSIMAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43375 # 2bptA.379.283 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 379 :HDSIDHLES 2bptA 284 :SMTVEFWST Number of specific fragments extracted= 1 number of extra gaps= 0 total=43376 # 1dxrC.379.100 read from T0547.t2k.many.frag # found chain 1dxrC in template set T0547 379 :HDSIDHLES 1dxrC 101 :KYPYVVARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43377 # 1bf5A.379.153 read from T0547.t2k.many.frag # found chain 1bf5A in template set T0547 379 :HDSIDHLES 1bf5A 303 :DRTFSLFQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43378 # 1p7tA.379.515 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 379 :HDSIDHLES 1p7tA 516 :ADMYSQKGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43379 # 1uq5A.379.234 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)H384 (1uq5A)D244 because Y (epsilon') conformation "forbidden" or filtered. T0547 379 :HDSID 1uq5A 239 :KFSVY T0547 385 :LES 1uq5A 245 :VSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=43381 # 1lfpA.379.215 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 379 :HDSIDHLES 1lfpA 216 :QKVIKLLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43382 # 2bkxA.379.151 read from T0547.t2k.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D380 (2bkxA)H153 because Y (epsilon') conformation "forbidden" or filtered. T0547 379 :H 2bkxA 152 :T T0547 381 :SIDHLES 2bkxA 154 :VVTLNEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=43384 # 1e2kA.379.263 read from T0547.t2k.many.frag # found chain 1e2kA in training set T0547 379 :HDSIDHLES 1e2kA 309 :AWALDVLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43385 # 1k87A.379.581 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 379 :HDSIDHLES 1k87A 582 :ADPVTAVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43386 # 1iicA.379.236 read from T0547.t2k.many.frag # found chain 1iicA in template set T0547 379 :HDSIDHLES 1iicA 270 :DQVFELFKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43387 # 1pjr.379.229 read from T0547.t2k.many.frag # found chain 1pjr in template set T0547 379 :HDSIDHLES 1pjr 230 :RAQYTLVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43388 # 1g5hA.379.354 read from T0547.t2k.many.frag # found chain 1g5hA in template set T0547 379 :HDSIDHLES 1g5hA 371 :QVCQGLLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43389 # 1dd9A.379.293 read from T0547.t2k.many.frag # found chain 1dd9A in training set T0547 379 :HDSIDHLES 1dd9A 389 :ARLSTLALP Number of specific fragments extracted= 1 number of extra gaps= 0 total=43390 # 1j7xA.379.85 read from T0547.t2k.many.frag # found chain 1j7xA in training set T0547 379 :HDSIDHLES 1j7xA 87 :EDEAMLQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43391 # 2bduA.379.217 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 379 :HDSIDHLES 2bduA 218 :LKNTDYFSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43392 # 1jr8A.379.76 read from T0547.t2k.many.frag # found chain 1jr8A in training set T0547 379 :HDSIDHLES 1jr8A 80 :MWGCHIHNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43393 # 1ho8A.379.390 read from T0547.t2k.many.frag # found chain 1ho8A in template set Warning: unaligning (T0547)H379 (1ho8A)K389 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I382 (1ho8A)Y392 because L (left) conformation "forbidden" or filtered. T0547 380 :DS 1ho8A 390 :DN T0547 383 :DHLES 1ho8A 393 :KIFRQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=43395 # 1yvrA.379.294 read from T0547.t2k.many.frag # found chain 1yvrA in template set Warning: unaligning (T0547)D380 (1yvrA)P296 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1yvrA)A297 because T (delta_L) conformation "forbidden" or filtered. T0547 379 :H 1yvrA 295 :A T0547 382 :IDHLES 1yvrA 298 :SSEVSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=43397 # 1jl0A.379.123 read from T0547.t2k.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)D380 (1jl0A)Y125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1jl0A)P126 because C (cis) conformation "forbidden" or filtered. T0547 379 :H 1jl0A 124 :G T0547 382 :IDHLES 1jl0A 127 :HRNFQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=43399 # 1fn9A.379.191 read from T0547.t2k.many.frag # found chain 1fn9A in training set T0547 379 :HDSIDHLES 1fn9A 192 :FNGVKLGGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43400 # 1vkhA.379.194 read from T0547.t2k.many.frag # found chain 1vkhA in template set T0547 379 :HDSIDHLES 1vkhA 183 :EEPSRVMPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43401 # 1uq5A.379.200 read from T0547.t2k.many.frag # found chain 1uq5A in training set T0547 379 :HDSIDHLES 1uq5A 205 :ITLENSWGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43402 # 1zy9A.379.479 read from T0547.t2k.many.frag # found chain 1zy9A in template set T0547 379 :HDSIDHLES 1zy9A 468 :DHGKKVLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43403 # 7odcA.380.350 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 380 :DSIDHLESI 7odcA 351 :YSSSIWGPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43404 # 1knwA.380.332 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L385 (1knwA)A338 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S387 (1knwA)P340 because G (3-10) conformation "forbidden" or filtered. T0547 380 :DSIDH 1knwA 333 :VETVV T0547 386 :E 1knwA 339 :G T0547 388 :I 1knwA 341 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=43407 # 1h8eA.380.296 read from T0547.t2k.many.frag # found chain 1h8eA in template set T0547 380 :DSIDHLESI 1h8eA 297 :DVFYLHSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43408 # 1ash.380.25 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 380 :DSIDHLESI 1ash 25 :DGIDLYKHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=43409 # 1bf5A.380.154 read from T0547.t2k.many.frag # found chain 1bf5A in template set T0547 380 :DSIDHLESI 1bf5A 304 :RTFSLFQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43410 # 1ijbA.380.186 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 380 :DSIDHLESI 1ijbA 686 :QRDEIVSYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43411 # 2bkxA.380.152 read from T0547.t2k.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D380 (2bkxA)H153 because Y (epsilon') conformation "forbidden" or filtered. T0547 381 :SIDHLESI 2bkxA 154 :VVTLNEQT Number of specific fragments extracted= 1 number of extra gaps= 1 total=43412 # 1t3gA.380.144 read from T0547.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0547)S381 (1t3gA)N548 because L (left) conformation "forbidden" or filtered. T0547 380 :D 1t3gA 547 :L T0547 382 :IDHLESI 1t3gA 549 :SKFWKRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=43414 # 1e0tA.380.322 read from T0547.t2k.many.frag # found chain 1e0tA in template set T0547 380 :DSIDHLESI 1e0tA 323 :EAVSIMATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43415 # 2bptA.380.284 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 380 :DSIDHLESI 2bptA 285 :MTVEFWSTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43416 # 1uq5A.380.235 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)H384 (1uq5A)D244 because Y (epsilon') conformation "forbidden" or filtered. T0547 380 :DSID 1uq5A 240 :FSVY T0547 385 :LESI 1uq5A 245 :VSIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=43418 # 1iicA.380.237 read from T0547.t2k.many.frag # found chain 1iicA in template set T0547 380 :DSIDHLESI 1iicA 271 :QVFELFKRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43419 # 1dxrC.380.101 read from T0547.t2k.many.frag # found chain 1dxrC in template set T0547 380 :DSIDHLESI 1dxrC 102 :YPYVVARRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=43420 # 1p7tA.380.516 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 380 :DSIDHLESI 1p7tA 517 :DMYSQKGDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43421 # 1lfpA.380.216 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 380 :DSIDHLESI 1lfpA 217 :KVIKLLNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43422 # 1g5hA.380.355 read from T0547.t2k.many.frag # found chain 1g5hA in template set T0547 380 :DSIDHLESI 1g5hA 372 :VCQGLLNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43423 # 1bc5A.380.178 read from T0547.t2k.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D380 (1bc5A)G194 because T (delta_L) conformation "forbidden" or filtered. T0547 381 :SIDHLESI 1bc5A 195 :LVRVRQEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=43424 # 1e2kA.380.264 read from T0547.t2k.many.frag # found chain 1e2kA in training set T0547 380 :DSIDHLESI 1e2kA 310 :WALDVLAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43425 # 1k87A.380.582 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 380 :DSIDHLESI 1k87A 583 :DPVTAVEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43426 # 1yukA.380.5 read from T0547.t2k.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)D380 (1yukA)F6 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1yukA)K7 because L (left) conformation "forbidden" or filtered. T0547 382 :IDHLESI 1yukA 8 :VSSCREC Number of specific fragments extracted= 1 number of extra gaps= 1 total=43427 # 1ho8A.380.391 read from T0547.t2k.many.frag # found chain 1ho8A in template set Warning: unaligning (T0547)S381 (1ho8A)N391 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I382 (1ho8A)Y392 because L (left) conformation "forbidden" or filtered. T0547 380 :D 1ho8A 390 :D T0547 383 :DHLESI 1ho8A 393 :KIFRQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=43429 # 1yvrA.380.295 read from T0547.t2k.many.frag # found chain 1yvrA in template set T0547 380 :DSIDHLESI 1yvrA 296 :PASSEVSSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43430 # 1pjr.380.230 read from T0547.t2k.many.frag # found chain 1pjr in template set T0547 380 :DSIDHLESI 1pjr 231 :AQYTLVKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43431 # 1jl0A.380.124 read from T0547.t2k.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)D380 (1jl0A)Y125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1jl0A)P126 because C (cis) conformation "forbidden" or filtered. T0547 382 :IDHLESI 1jl0A 127 :HRNFQEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=43432 # 1dd9A.380.294 read from T0547.t2k.many.frag # found chain 1dd9A in training set T0547 380 :DSIDHLESI 1dd9A 390 :RLSTLALPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43433 # 1woyA.380.351 read from T0547.t2k.many.frag # found chain 1woyA in template set T0547 380 :DSIDHLESI 1woyA 352 :DLGNLVQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43434 # 1dljA.380.361 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 380 :DSIDHLESI 1dljA 362 :VLVNDLENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=43435 # 1zy9A.380.480 read from T0547.t2k.many.frag # found chain 1zy9A in template set T0547 380 :DSIDHLESI 1zy9A 469 :HGKKVLKET Number of specific fragments extracted= 1 number of extra gaps= 0 total=43436 # 1u8bA.380.43 read from T0547.t2k.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)S387 (1u8bA)N57 because Y (epsilon') conformation "forbidden" or filtered. T0547 380 :DSIDHLE 1u8bA 50 :ENVSFYA T0547 388 :I 1u8bA 58 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=43438 # 2bduA.380.218 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 380 :DSIDHLESI 2bduA 219 :KNTDYFSQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43439 # 7odcA.381.351 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 381 :SIDHLESIL 7odcA 352 :SSSIWGPTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=43440 # 1knwA.381.333 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L385 (1knwA)A338 because Y (epsilon') conformation "forbidden" or filtered. T0547 381 :SIDH 1knwA 334 :ETVV T0547 386 :ESIL 1knwA 339 :GPLC Number of specific fragments extracted= 2 number of extra gaps= 1 total=43442 # 1h8eA.381.297 read from T0547.t2k.many.frag # found chain 1h8eA in template set T0547 381 :SIDHLESIL 1h8eA 298 :VFYLHSRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43443 # 1bf5A.381.155 read from T0547.t2k.many.frag # found chain 1bf5A in template set T0547 381 :SIDHLESIL 1bf5A 305 :TFSLFQQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43444 # 1ijbA.381.187 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 381 :SIDHLESIL 1ijbA 687 :RDEIVSYLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=43445 # 1ash.381.26 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 381 :SIDHLESIL 1ash 26 :GIDLYKHMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=43446 # 2bkxA.381.153 read from T0547.t2k.many.frag # found chain 2bkxA in training set T0547 381 :SIDHLESIL 2bkxA 154 :VVTLNEQTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43447 # 1t3gA.381.145 read from T0547.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0547)S381 (1t3gA)N548 because L (left) conformation "forbidden" or filtered. T0547 382 :IDHLESIL 1t3gA 549 :SKFWKRLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=43448 # 1e0tA.381.323 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 T0547 381 :SIDHLESI 1e0tA 324 :AVSIMATI Number of specific fragments extracted= 1 number of extra gaps= 1 total=43449 # 1bc5A.381.179 read from T0547.t2k.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D383 (1bc5A)R197 because E (beta_S) conformation "forbidden" or filtered. T0547 381 :SI 1bc5A 195 :LV T0547 384 :HLESIL 1bc5A 198 :VRQELA Number of specific fragments extracted= 2 number of extra gaps= 1 total=43451 # 1g5hA.381.356 read from T0547.t2k.many.frag # found chain 1g5hA in template set T0547 381 :SIDHLESIL 1g5hA 373 :CQGLLNELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43452 # 2bptA.381.285 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 381 :SIDHLESIL 2bptA 286 :TVEFWSTIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=43453 # 1uq5A.381.236 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)H384 (1uq5A)D244 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I388 (1uq5A)L248 because G (3-10) conformation "forbidden" or filtered. T0547 381 :SID 1uq5A 241 :SVY T0547 385 :LES 1uq5A 245 :VSI T0547 389 :L 1uq5A 249 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=43456 # 1iicA.381.238 read from T0547.t2k.many.frag # found chain 1iicA in template set T0547 381 :SIDHLESIL 1iicA 272 :VFELFKRYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43457 # 1dxrC.381.102 read from T0547.t2k.many.frag # found chain 1dxrC in template set T0547 381 :SIDHLESIL 1dxrC 103 :PYVVARRML Number of specific fragments extracted= 1 number of extra gaps= 0 total=43458 # 1yukA.381.6 read from T0547.t2k.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)S381 (1yukA)K7 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1yukA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 382 :ID 1yukA 8 :VS T0547 385 :LESIL 1yukA 11 :CRECI Number of specific fragments extracted= 2 number of extra gaps= 2 total=43460 # 1yvrA.381.296 read from T0547.t2k.many.frag # found chain 1yvrA in template set Warning: unaligning (T0547)S381 (1yvrA)A297 because T (delta_L) conformation "forbidden" or filtered. T0547 382 :IDHLESIL 1yvrA 298 :SSEVSSVC Number of specific fragments extracted= 1 number of extra gaps= 1 total=43461 # 1e2kA.381.265 read from T0547.t2k.many.frag # found chain 1e2kA in training set T0547 381 :SIDHLESIL 1e2kA 311 :ALDVLAKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43462 # 1lfpA.381.217 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 381 :SIDHLESIL 1lfpA 218 :VIKLLNALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43463 # 1ho8A.381.392 read from T0547.t2k.many.frag # found chain 1ho8A in template set Warning: unaligning (T0547)I382 (1ho8A)Y392 because L (left) conformation "forbidden" or filtered. T0547 381 :S 1ho8A 391 :N T0547 383 :DHLESIL 1ho8A 393 :KIFRQLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=43465 # 1pjr.381.231 read from T0547.t2k.many.frag # found chain 1pjr in template set T0547 381 :SIDHLESIL 1pjr 232 :QYTLVKKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43466 # 1zy9A.381.481 read from T0547.t2k.many.frag # found chain 1zy9A in template set T0547 381 :SIDHLESIL 1zy9A 470 :GKKVLKETL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43467 # 1jl0A.381.125 read from T0547.t2k.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)S381 (1jl0A)P126 because C (cis) conformation "forbidden" or filtered. T0547 382 :IDHLESIL 1jl0A 127 :HRNFQEEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=43468 # 1p7tA.381.517 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 381 :SIDHLESIL 1p7tA 518 :MYSQKGDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43469 # 1dljA.381.362 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 381 :SIDHLESIL 1dljA 363 :LVNDLENFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43470 1no7A expands to /projects/compbio/data/pdb/1no7.pdb.gz 1no7A:# 1no7A.381.432 read from T0547.t2k.many.frag # adding 1no7A to template set # found chain 1no7A in template set Warning: unaligning (T0547)S381 (1no7A)R883 because L (left) conformation "forbidden" or filtered. T0547 382 :IDHLESIL 1no7A 884 :VVVDGPAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=43471 1sqwA expands to /projects/compbio/data/pdb/1sqw.pdb.gz 1sqwA:# 1sqwA.381.95 read from T0547.t2k.many.frag # adding 1sqwA to template set # found chain 1sqwA in template set T0547 381 :SIDHLESIL 1sqwA 96 :KVWIKPGAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43472 # 1jihA.381.334 read from T0547.t2k.many.frag # found chain 1jihA in template set Warning: unaligning (T0547)H384 (1jihA)N338 because Y (epsilon') conformation "forbidden" or filtered. T0547 381 :SID 1jihA 335 :WPD T0547 385 :LESIL 1jihA 339 :AGQLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=43474 # 1u8bA.381.44 read from T0547.t2k.many.frag # found chain 1u8bA in template set T0547 381 :SIDHLESIL 1u8bA 51 :NVSFYANAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43475 # 1k87A.381.583 read from T0547.t2k.many.frag # found chain 1k87A in template set T0547 381 :SIDHLESIL 1k87A 584 :PVTAVEKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43476 # 1knwA.382.334 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L385 (1knwA)A338 because Y (epsilon') conformation "forbidden" or filtered. T0547 382 :IDH 1knwA 335 :TVV T0547 386 :ESILT 1knwA 339 :GPLCE Number of specific fragments extracted= 2 number of extra gaps= 1 total=43478 # 7odcA.382.352 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E386 (7odcA)G357 because P (beta_P) conformation "forbidden" or filtered. T0547 382 :IDHL 7odcA 353 :SSIW T0547 387 :SILT 7odcA 358 :PTCD Number of specific fragments extracted= 2 number of extra gaps= 1 total=43480 # 1bf5A.382.156 read from T0547.t2k.many.frag # found chain 1bf5A in template set T0547 382 :IDHLESILT 1bf5A 306 :FSLFQQLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43481 # 1h8eA.382.298 read from T0547.t2k.many.frag # found chain 1h8eA in template set T0547 382 :IDHLESILT 1h8eA 299 :FYLHSRLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43482 # 1ijbA.382.188 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 382 :IDHLESILT 1ijbA 688 :DEIVSYLCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43483 # 1bc5A.382.180 read from T0547.t2k.many.frag # found chain 1bc5A in template set T0547 382 :IDHLESILT 1bc5A 196 :VRVRQELAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=43484 # 2bkxA.382.154 read from T0547.t2k.many.frag # found chain 2bkxA in training set T0547 382 :IDHLESILT 2bkxA 155 :VTLNEQTRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43485 # 1yukA.382.7 read from T0547.t2k.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)H384 (1yukA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 382 :ID 1yukA 8 :VS T0547 385 :LESILT 1yukA 11 :CRECIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=43487 # 1ash.382.27 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 382 :IDHLESILT 1ash 27 :IDLYKHMFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43488 # 1e0tA.382.324 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1e0tA)E333 T0547 382 :IDHLESI 1e0tA 325 :VSIMATI Number of specific fragments extracted= 1 number of extra gaps= 1 total=43489 # 1g5hA.382.357 read from T0547.t2k.many.frag # found chain 1g5hA in template set T0547 382 :IDHLESILT 1g5hA 374 :QGLLNELLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43490 # 1iicA.382.239 read from T0547.t2k.many.frag # found chain 1iicA in template set T0547 382 :IDHLESILT 1iicA 273 :FELFKRYQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43491 # 1t3gA.382.146 read from T0547.t2k.many.frag # found chain 1t3gA in template set T0547 382 :IDHLESILT 1t3gA 549 :SKFWKRLQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43492 # 1e2kA.382.266 read from T0547.t2k.many.frag # found chain 1e2kA in training set T0547 382 :IDHLESILT 1e2kA 312 :LDVLAKRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43493 # 1dljA.382.363 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 382 :IDHLESILT 1dljA 364 :VNDLENFKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43494 # 1uq5A.382.237 read from T0547.t2k.many.frag # found chain 1uq5A in training set T0547 382 :IDHLESILT 1uq5A 242 :VYDVSILIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=43495 # 1yvrA.382.297 read from T0547.t2k.many.frag # found chain 1yvrA in template set T0547 382 :IDHLESILT 1yvrA 298 :SSEVSSVCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43496 # 1p7tA.382.518 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 382 :IDHLESILT 1p7tA 519 :YSQKGDQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43497 # 1ho8A.382.393 read from T0547.t2k.many.frag # found chain 1ho8A in template set T0547 382 :IDHLESILT 1ho8A 392 :YKIFRQLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43498 # 1jl0A.382.126 read from T0547.t2k.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)I382 (1jl0A)H127 because G (3-10) conformation "forbidden" or filtered. T0547 383 :DHLESILT 1jl0A 128 :RNFQEEIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=43499 # 1lfpA.382.218 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 382 :IDHLESILT 1lfpA 219 :IKLLNALEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43500 # 1dxrC.382.103 read from T0547.t2k.many.frag # found chain 1dxrC in template set T0547 382 :IDHLESILT 1dxrC 104 :YVVARRMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43501 # 2bptA.382.286 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 382 :IDHLESILT 2bptA 287 :VEFWSTICE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43502 # 1zy9A.382.482 read from T0547.t2k.many.frag # found chain 1zy9A in template set T0547 382 :IDHLESILT 1zy9A 471 :KKVLKETLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43503 # 1no7A.382.433 read from T0547.t2k.many.frag # found chain 1no7A in template set T0547 382 :IDHLESILT 1no7A 884 :VVVDGPAML Number of specific fragments extracted= 1 number of extra gaps= 0 total=43504 # 1pjr.382.232 read from T0547.t2k.many.frag # found chain 1pjr in template set T0547 382 :IDHLESILT 1pjr 233 :YTLVKKLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43505 # 1u8bA.382.45 read from T0547.t2k.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)S387 (1u8bA)N57 because Y (epsilon') conformation "forbidden" or filtered. T0547 382 :IDHLE 1u8bA 52 :VSFYA T0547 388 :ILT 1u8bA 58 :ASE Number of specific fragments extracted= 2 number of extra gaps= 1 total=43507 1kcfA expands to /projects/compbio/data/pdb/1kcf.pdb.gz 1kcfA:# 1kcfA.382.191 read from T0547.t2k.many.frag # adding 1kcfA to template set # found chain 1kcfA in template set T0547 382 :IDHLESILT 1kcfA 192 :VQMVKELID Number of specific fragments extracted= 1 number of extra gaps= 0 total=43508 # 1qg8A.382.164 read from T0547.t2k.many.frag # found chain 1qg8A in training set T0547 382 :IDHLESILT 1qg8A 166 :YSVLEKVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43509 # 1jihA.382.335 read from T0547.t2k.many.frag # found chain 1jihA in template set Warning: unaligning (T0547)H384 (1jihA)N338 because Y (epsilon') conformation "forbidden" or filtered. T0547 382 :ID 1jihA 336 :PD T0547 385 :LESILT 1jihA 339 :AGQLKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=43511 # 1knwA.383.335 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)D383 (1knwA)V336 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L385 (1knwA)A338 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E386 (1knwA)G339 because P (beta_P) conformation "forbidden" or filtered. T0547 384 :H 1knwA 337 :V T0547 387 :SILTL 1knwA 340 :PLCES Number of specific fragments extracted= 2 number of extra gaps= 2 total=43513 # 7odcA.383.353 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 383 :DHLESILTL 7odcA 354 :SIWGPTCDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43514 # 1bf5A.383.157 read from T0547.t2k.many.frag # found chain 1bf5A in template set T0547 383 :DHLESILTL 1bf5A 307 :SLFQQLIQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43515 # 1bc5A.383.181 read from T0547.t2k.many.frag # found chain 1bc5A in template set T0547 383 :DHLESILTL 1bc5A 197 :RVRQELANY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43516 # 1yukA.383.8 read from T0547.t2k.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)H384 (1yukA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 383 :D 1yukA 9 :S T0547 385 :LESILTL 1yukA 11 :CRECIES Number of specific fragments extracted= 2 number of extra gaps= 1 total=43518 # 1g5hA.383.358 read from T0547.t2k.many.frag # found chain 1g5hA in template set T0547 383 :DHLESILTL 1g5hA 375 :GLLNELLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=43519 # 1ijbA.383.189 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 383 :DHLESILTL 1ijbA 689 :EIVSYLCDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43520 # 2bkxA.383.155 read from T0547.t2k.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D383 (2bkxA)T156 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (2bkxA)L157 because P (beta_P) conformation "forbidden" or filtered. T0547 385 :LESILTL 2bkxA 158 :NEQTRQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=43521 # 1h8eA.383.299 read from T0547.t2k.many.frag # found chain 1h8eA in template set T0547 383 :DHLESILTL 1h8eA 300 :YLHSRLLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=43522 # 1e0tA.383.325 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1e0tA)E333 T0547 383 :DHLESI 1e0tA 326 :SIMATI T0547 391 :L 1e0tA 334 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=43524 # 1ash.383.28 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 383 :DHLESILTL 1ash 28 :DLYKHMFEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=43525 # 1iicA.383.240 read from T0547.t2k.many.frag # found chain 1iicA in template set T0547 383 :DHLESILTL 1iicA 274 :ELFKRYQSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43526 # 1dljA.383.364 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 383 :DHLESILTL 1dljA 365 :NDLENFKKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43527 # 1t3gA.383.147 read from T0547.t2k.many.frag # found chain 1t3gA in template set T0547 383 :DHLESILTL 1t3gA 550 :KFWKRLQYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43528 # 1yvrA.383.298 read from T0547.t2k.many.frag # found chain 1yvrA in template set T0547 383 :DHLESILTL 1yvrA 299 :SEVSSVCER Number of specific fragments extracted= 1 number of extra gaps= 0 total=43529 # 1uq5A.383.238 read from T0547.t2k.many.frag # found chain 1uq5A in training set T0547 383 :DHLESILTL 1uq5A 243 :YDVSILIPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43530 # 1ho8A.383.394 read from T0547.t2k.many.frag # found chain 1ho8A in template set T0547 383 :DHLESILTL 1ho8A 393 :KIFRQLIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43531 # 1kcfA.383.192 read from T0547.t2k.many.frag # found chain 1kcfA in template set T0547 383 :DHLESILTL 1kcfA 193 :QMVKELIDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43532 # 1no7A.383.434 read from T0547.t2k.many.frag # found chain 1no7A in template set T0547 383 :DHLESILTL 1no7A 885 :VVDGPAMLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43533 # 1rx0A.383.121 read from T0547.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0547)T390 (1rx0A)T129 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L391 (1rx0A)M130 because L (left) conformation "forbidden" or filtered. T0547 383 :DHLESIL 1rx0A 122 :KFCPPLC Number of specific fragments extracted= 1 number of extra gaps= 1 total=43534 # 1e2kA.383.267 read from T0547.t2k.many.frag # found chain 1e2kA in training set T0547 383 :DHLESILTL 1e2kA 313 :DVLAKRLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43535 # 1p7tA.383.519 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 383 :DHLESILTL 1p7tA 520 :SQKGDQLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43536 # 1jl0A.383.127 read from T0547.t2k.many.frag # found chain 1jl0A in training set T0547 383 :DHLESILTL 1jl0A 128 :RNFQEEIEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=43537 # 1zy9A.383.483 read from T0547.t2k.many.frag # found chain 1zy9A in template set T0547 383 :DHLESILTL 1zy9A 472 :KVLKETLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43538 # 1lfpA.383.219 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 383 :DHLESILTL 1lfpA 220 :KLLNALEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43539 # 1dxrC.383.104 read from T0547.t2k.many.frag # found chain 1dxrC in template set T0547 383 :DHLESILTL 1dxrC 105 :VVARRMLEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=43540 # 1jihA.383.336 read from T0547.t2k.many.frag # found chain 1jihA in template set Warning: unaligning (T0547)H384 (1jihA)N338 because Y (epsilon') conformation "forbidden" or filtered. T0547 383 :D 1jihA 337 :D T0547 385 :LESILTL 1jihA 339 :AGQLKEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=43542 # 2bptA.383.287 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 383 :DHLESILTL 2bptA 288 :EFWSTICEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43543 # 1sqwA.383.97 read from T0547.t2k.many.frag # found chain 1sqwA in template set T0547 383 :DHLESILTL 1sqwA 98 :WIKPGAEQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43544 # 1pjr.383.233 read from T0547.t2k.many.frag # found chain 1pjr in template set T0547 383 :DHLESILTL 1pjr 234 :TLVKKLAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=43545 # 1knwA.384.336 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 384 :HLESILTLF 1knwA 337 :VAGPLCESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43546 # 7odcA.384.354 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E386 (7odcA)G357 because P (beta_P) conformation "forbidden" or filtered. T0547 384 :HL 7odcA 355 :IW T0547 387 :SILTLF 7odcA 358 :PTCDGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=43548 # 1yukA.384.9 read from T0547.t2k.many.frag # found chain 1yukA in training set T0547 384 :HLESILTLF 1yukA 10 :SCRECIESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43549 # 1bf5A.384.158 read from T0547.t2k.many.frag # found chain 1bf5A in template set T0547 384 :HLESILTLF 1bf5A 308 :LFQQLIQSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43550 # 1ijbA.384.190 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 384 :HLESILTLF 1ijbA 690 :IVSYLCDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43551 # 1e0tA.384.326 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1e0tA)E333 T0547 384 :HLESI 1e0tA 327 :IMATI T0547 391 :LF 1e0tA 334 :RT Number of specific fragments extracted= 2 number of extra gaps= 1 total=43553 # 1g5hA.384.359 read from T0547.t2k.many.frag # found chain 1g5hA in template set Warning: unaligning (T0547)F392 (1g5hA)G384 because L (left) conformation "forbidden" or filtered. T0547 384 :HLESILTL 1g5hA 376 :LLNELLEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=43554 # 1bc5A.384.182 read from T0547.t2k.many.frag # found chain 1bc5A in template set T0547 384 :HLESILTLF 1bc5A 198 :VRQELANYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43555 # 1e2kA.384.268 read from T0547.t2k.many.frag # found chain 1e2kA in training set T0547 384 :HLESILTLF 1e2kA 314 :VLAKRLRSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=43556 # 1dljA.384.365 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 384 :HLESILTLF 1dljA 366 :DLENFKKQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43557 # 1h8eA.384.300 read from T0547.t2k.many.frag # found chain 1h8eA in template set T0547 384 :HLESILTLF 1h8eA 301 :LHSRLLERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43558 # 1ash.384.29 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 384 :HLESILTLF 1ash 29 :LYKHMFENY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43559 # 1no7A.384.435 read from T0547.t2k.many.frag # found chain 1no7A in template set T0547 384 :HLESILTLF 1no7A 886 :VDGPAMLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43560 # 1kcfA.384.193 read from T0547.t2k.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)F392 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0547 384 :HLESILTL 1kcfA 194 :MVKELIDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=43561 # 2bkxA.384.156 read from T0547.t2k.many.frag # found chain 2bkxA in training set T0547 384 :HLESILTLF 2bkxA 157 :LNEQTRQAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=43562 # 1rx0A.384.122 read from T0547.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0547)L391 (1rx0A)M130 because L (left) conformation "forbidden" or filtered. T0547 384 :HLESILT 1rx0A 123 :FCPPLCT T0547 392 :F 1rx0A 131 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=43564 # 1p7tA.384.520 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 384 :HLESILTLF 1p7tA 521 :QKGDQLRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43565 # 1iicA.384.241 read from T0547.t2k.many.frag # found chain 1iicA in template set T0547 384 :HLESILTLF 1iicA 275 :LFKRYQSRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=43566 # 1ho8A.384.395 read from T0547.t2k.many.frag # found chain 1ho8A in template set T0547 384 :HLESILTLF 1ho8A 394 :IFRQLIELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43567 # 1yvrA.384.299 read from T0547.t2k.many.frag # found chain 1yvrA in template set T0547 384 :HLESILTLF 1yvrA 300 :EVSSVCERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43568 # 1dxrC.384.105 read from T0547.t2k.many.frag # found chain 1dxrC in template set T0547 384 :HLESILTLF 1dxrC 106 :VARRMLEMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43569 # 1t3gA.384.148 read from T0547.t2k.many.frag # found chain 1t3gA in template set T0547 384 :HLESILTLF 1t3gA 551 :FWKRLQYEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=43570 # 1jl0A.384.128 read from T0547.t2k.many.frag # found chain 1jl0A in training set T0547 384 :HLESILTLF 1jl0A 129 :NFQEEIEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43571 # 1uq5A.384.239 read from T0547.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)H384 (1uq5A)D244 because Y (epsilon') conformation "forbidden" or filtered. T0547 385 :LESILTLF 1uq5A 245 :VSILIPII Number of specific fragments extracted= 1 number of extra gaps= 1 total=43572 # 2bptA.384.288 read from T0547.t2k.many.frag # found chain 2bptA in template set T0547 384 :HLESILTLF 2bptA 289 :FWSTICEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43573 # 1zy9A.384.484 read from T0547.t2k.many.frag # found chain 1zy9A in template set T0547 384 :HLESILTLF 1zy9A 473 :VLKETLELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43574 # 1m0dA.384.96 read from T0547.t2k.many.frag # found chain 1m0dA in template set T0547 384 :HLESILTLF 1m0dA 108 :SYGEFCEKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=43575 # 1lqtA.384.239 read from T0547.t2k.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)E386 (1lqtA)G242 because Y (epsilon') conformation "forbidden" or filtered. T0547 384 :HL 1lqtA 240 :AV T0547 387 :SILTLF 1lqtA 243 :KVCKQN Number of specific fragments extracted= 2 number of extra gaps= 1 total=43577 # 1jihA.384.337 read from T0547.t2k.many.frag # found chain 1jihA in template set Warning: unaligning (T0547)H384 (1jihA)N338 because Y (epsilon') conformation "forbidden" or filtered. T0547 385 :LESILTLF 1jihA 339 :AGQLKEFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=43578 # 1nnlA.384.200 read from T0547.t2k.many.frag # found chain 1nnlA in training set T0547 384 :HLESILTLF 1nnlA 201 :IRQQVKDNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43579 # 1knwA.385.337 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 385 :LESILTLFD 1knwA 338 :AGPLCESGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43580 # 1yukA.385.10 read from T0547.t2k.many.frag # found chain 1yukA in training set T0547 385 :LESILTLFD 1yukA 11 :CRECIESGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=43581 # 1bf5A.385.159 read from T0547.t2k.many.frag # found chain 1bf5A in template set T0547 385 :LESILTLFD 1bf5A 309 :FQQLIQSSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=43582 # 7odcA.385.355 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 385 :LESILTLFD 7odcA 356 :WGPTCDGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43583 # 1dljA.385.366 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 385 :LESILTLFD 1dljA 367 :LENFKKQAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=43584 # 1bc5A.385.183 read from T0547.t2k.many.frag # found chain 1bc5A in template set T0547 385 :LESILTLFD 1bc5A 199 :RQELANYVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43585 # 1ijbA.385.191 read from T0547.t2k.many.frag # found chain 1ijbA in training set Warning: unaligning (T0547)D393 (1ijbA)P699 because P (beta_P) conformation "forbidden" or filtered. T0547 385 :LESILTLF 1ijbA 691 :VSYLCDLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=43586 # 1e2kA.385.269 read from T0547.t2k.many.frag # found chain 1e2kA in training set T0547 385 :LESILTLFD 1e2kA 315 :LAKRLRSMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=43587 # 1g5hA.385.360 read from T0547.t2k.many.frag # found chain 1g5hA in template set Warning: unaligning (T0547)F392 (1g5hA)G384 because L (left) conformation "forbidden" or filtered. T0547 385 :LESILTL 1g5hA 377 :LNELLEN T0547 393 :D 1g5hA 385 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=43589 # 1e0tA.385.327 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1e0tA)E333 T0547 385 :LESI 1e0tA 328 :MATI T0547 391 :LFD 1e0tA 334 :RTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=43591 # 1kcfA.385.194 read from T0547.t2k.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)F392 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0547 385 :LESILTL 1kcfA 195 :VKELIDG T0547 393 :D 1kcfA 203 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=43593 # 1no7A.385.436 read from T0547.t2k.many.frag # found chain 1no7A in template set T0547 385 :LESILTLFD 1no7A 887 :DGPAMLTLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43594 # 1ho8A.385.396 read from T0547.t2k.many.frag # found chain 1ho8A in template set T0547 385 :LESILTLFD 1ho8A 395 :FRQLIELLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43595 # 1h8eA.385.301 read from T0547.t2k.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)D393 (1h8eA)A310 because Y (epsilon') conformation "forbidden" or filtered. T0547 385 :LESILTLF 1h8eA 302 :HSRLLERA Number of specific fragments extracted= 1 number of extra gaps= 1 total=43596 # 1iicA.385.242 read from T0547.t2k.many.frag # found chain 1iicA in template set T0547 385 :LESILTLFD 1iicA 276 :FKRYQSRFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43597 # 1ash.385.30 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 385 :LESILTLFD 1ash 30 :YKHMFENYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=43598 # 1yvrA.385.300 read from T0547.t2k.many.frag # found chain 1yvrA in template set T0547 385 :LESILTLFD 1yvrA 301 :VSSVCERLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43599 # 1t3gA.385.149 read from T0547.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0547)D393 (1t3gA)P560 because P (beta_P) conformation "forbidden" or filtered. T0547 385 :LESILTLF 1t3gA 552 :WKRLQYEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=43600 # 1rx0A.385.123 read from T0547.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0547)L391 (1rx0A)M130 because L (left) conformation "forbidden" or filtered. T0547 385 :LESILT 1rx0A 124 :CPPLCT T0547 392 :FD 1rx0A 131 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=43602 # 1nnlA.385.201 read from T0547.t2k.many.frag # found chain 1nnlA in training set T0547 385 :LESILTLFD 1nnlA 202 :RQQVKDNAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43603 # 1uq5A.385.240 read from T0547.t2k.many.frag # found chain 1uq5A in training set T0547 385 :LESILTLFD 1uq5A 245 :VSILIPIIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43604 # 1jl0A.385.129 read from T0547.t2k.many.frag # found chain 1jl0A in training set T0547 385 :LESILTLFD 1jl0A 130 :FQEEIEFLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=43605 # 2bkxA.385.157 read from T0547.t2k.many.frag # found chain 2bkxA in training set T0547 385 :LESILTLFD 2bkxA 158 :NEQTRQANA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43606 # 1dxrC.385.106 read from T0547.t2k.many.frag # found chain 1dxrC in template set T0547 385 :LESILTLFD 1dxrC 107 :ARRMLEMTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43607 # 1bupA.385.309 read from T0547.t2k.many.frag # found chain 1bupA in training set T0547 385 :LESILTLFD 1bupA 310 :FRGTLDPVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43608 # 1lfpA.385.221 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 385 :LESILTLFD 1lfpA 222 :LNALEELDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43609 # 2ffeA.385.248 read from T0547.t2k.many.frag # found chain 2ffeA in template set T0547 385 :LESILTLFD 2ffeA 249 :AEYYQDFLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43610 # 1zy9A.385.485 read from T0547.t2k.many.frag # found chain 1zy9A in template set T0547 385 :LESILTLFD 1zy9A 474 :LKETLELLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43611 # 2c1vA.385.40 read from T0547.t2k.many.frag # found chain 2c1vA in training set T0547 385 :LESILTLFD 2c1vA 41 :TAEKIELGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43612 # 1jihA.385.338 read from T0547.t2k.many.frag # found chain 1jihA in template set T0547 385 :LESILTLFD 1jihA 339 :AGQLKEFLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43613 # 1knwA.386.338 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)F392 (1knwA)G345 because G (3-10) conformation "forbidden" or filtered. T0547 386 :ESILTL 1knwA 339 :GPLCES T0547 393 :DL 1knwA 346 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=43615 # 7odcA.386.356 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E386 (7odcA)G357 because P (beta_P) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 7odcA 358 :PTCDGLDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=43616 # 1dljA.386.367 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 386 :ESILTLFDL 1dljA 368 :ENFKKQANI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43617 # 1e2kA.386.270 read from T0547.t2k.many.frag # found chain 1e2kA in training set T0547 386 :ESILTLFDL 1e2kA 316 :AKRLRSMHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43618 # 1yukA.386.11 read from T0547.t2k.many.frag # found chain 1yukA in training set T0547 386 :ESILTLFDL 1yukA 12 :RECIESGPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43619 # 1bf5A.386.160 read from T0547.t2k.many.frag # found chain 1bf5A in template set T0547 386 :ESILTLFDL 1bf5A 310 :QQLIQSSFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43620 # 1bc5A.386.184 read from T0547.t2k.many.frag # found chain 1bc5A in template set T0547 386 :ESILTLFDL 1bc5A 200 :QELANYVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=43621 # 1g5hA.386.361 read from T0547.t2k.many.frag # found chain 1g5hA in template set Warning: unaligning (T0547)F392 (1g5hA)G384 because L (left) conformation "forbidden" or filtered. T0547 386 :ESILTL 1g5hA 378 :NELLEN T0547 393 :DL 1g5hA 385 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=43623 # 1kcfA.386.195 read from T0547.t2k.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)F392 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0547 386 :ESILTL 1kcfA 196 :KELIDG T0547 393 :DL 1kcfA 203 :KI Number of specific fragments extracted= 2 number of extra gaps= 1 total=43625 # 1a4iA.386.202 read from T0547.t2k.many.frag # found chain 1a4iA in training set T0547 386 :ESILTLFDL 1a4iA 203 :DEEVNKGDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43626 # 1e0tA.386.328 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1e0tA)E333 T0547 386 :ESI 1e0tA 329 :ATI T0547 391 :LFDL 1e0tA 334 :RTDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=43628 # 1ijbA.386.192 read from T0547.t2k.many.frag # found chain 1ijbA in training set T0547 386 :ESILTLFDL 1ijbA 692 :SYLCDLAPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43629 # 1rx0A.386.124 read from T0547.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0547)T390 (1rx0A)T129 because G (3-10) conformation "forbidden" or filtered. T0547 386 :ESIL 1rx0A 125 :PPLC T0547 391 :LFDL 1rx0A 130 :MEKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=43631 # 2ffeA.386.249 read from T0547.t2k.many.frag # found chain 2ffeA in template set T0547 386 :ESILTLFDL 2ffeA 250 :EYYQDFLDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43632 # 1nnlA.386.202 read from T0547.t2k.many.frag # found chain 1nnlA in training set T0547 386 :ESILTLFDL 1nnlA 203 :QQVKDNAKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=43633 # 1no7A.386.437 read from T0547.t2k.many.frag # found chain 1no7A in template set T0547 386 :ESILTLFDL 1no7A 888 :GPAMLTLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43634 # 2c1vA.386.41 read from T0547.t2k.many.frag # found chain 2c1vA in training set T0547 386 :ESILTLFDL 2c1vA 42 :AEKIELGKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43635 # 1ash.386.31 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 386 :ESILTLFDL 1ash 31 :KHMFENYPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=43636 # 1iicA.386.243 read from T0547.t2k.many.frag # found chain 1iicA in template set T0547 386 :ESILTLFDL 1iicA 277 :KRYQSRFEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43637 # 1jl0A.386.130 read from T0547.t2k.many.frag # found chain 1jl0A in training set T0547 386 :ESILTLFDL 1jl0A 131 :QEEIEFLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43638 # 1ynfA.386.428 read from T0547.t2k.many.frag # found chain 1ynfA in template set T0547 386 :ESILTLFDL 1ynfA 418 :REGREALDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43639 # 1yhtA.386.295 read from T0547.t2k.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1yhtA)N301 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1yhtA)N301 T0547 386 :ESIL 1yhtA 296 :KDVI T0547 392 :FDL 1yhtA 302 :WDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=43641 # 1h8eA.386.302 read from T0547.t2k.many.frag # found chain 1h8eA in template set T0547 386 :ESILTLFDL 1h8eA 303 :SRLLERAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43642 # 1ho8A.386.397 read from T0547.t2k.many.frag # found chain 1ho8A in template set T0547 386 :ESILTLFDL 1ho8A 396 :RQLIELLQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43643 # 1dxrC.386.107 read from T0547.t2k.many.frag # found chain 1dxrC in template set T0547 386 :ESILTLFDL 1dxrC 108 :RRMLEMTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43644 # 1vhtA.386.164 read from T0547.t2k.many.frag # found chain 1vhtA in training set T0547 386 :ESILTLFDL 1vhtA 163 :EARLAVADD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43645 1dozA expands to /projects/compbio/data/pdb/1doz.pdb.gz 1dozA:# 1dozA.386.196 read from T0547.t2k.many.frag # adding 1dozA to template set # found chain 1dozA in template set T0547 386 :ESILTLFDL 1dozA 198 :DQLHESAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43646 # 1p7tA.386.522 read from T0547.t2k.many.frag # found chain 1p7tA in template set Warning: unaligning (T0547)F392 (1p7tA)G529 because T (delta_L) conformation "forbidden" or filtered. T0547 386 :ESILTL 1p7tA 523 :GDQLRA T0547 393 :DL 1p7tA 530 :AN Number of specific fragments extracted= 2 number of extra gaps= 1 total=43648 # 1yvrA.386.301 read from T0547.t2k.many.frag # found chain 1yvrA in template set T0547 386 :ESILTLFDL 1yvrA 302 :SSVCERLTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=43649 # 2nacA.386.241 read from T0547.t2k.many.frag # found chain 2nacA in template set T0547 386 :ESILTLFDL 2nacA 242 :EDMYPVCDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43650 # 1knwA.387.339 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)S387 (1knwA)P340 because G (3-10) conformation "forbidden" or filtered. T0547 388 :ILTLFDLG 1knwA 341 :LCESGDVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=43651 # 1dljA.387.368 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 387 :SILTLFDLG 1dljA 369 :NFKKQANII Number of specific fragments extracted= 1 number of extra gaps= 0 total=43652 # 7odcA.387.357 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 387 :SILTLFDLG 7odcA 358 :PTCDGLDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43653 # 1a4iA.387.203 read from T0547.t2k.many.frag # found chain 1a4iA in training set Warning: unaligning (T0547)G395 (1a4iA)L212 because E (beta_S) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1a4iA 204 :EEVNKGDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=43654 # 1e2kA.387.271 read from T0547.t2k.many.frag # found chain 1e2kA in training set T0547 387 :SILTLFDLG 1e2kA 317 :KRLRSMHVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=43655 # 1yukA.387.12 read from T0547.t2k.many.frag # found chain 1yukA in training set T0547 387 :SILTLFDLG 1yukA 13 :ECIESGPGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=43656 # 1bc5A.387.185 read from T0547.t2k.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D393 (1bc5A)E207 because E (beta_S) conformation "forbidden" or filtered. T0547 387 :SILTLF 1bc5A 201 :ELANYV T0547 394 :LG 1bc5A 208 :FS Number of specific fragments extracted= 2 number of extra gaps= 1 total=43658 # 2ffeA.387.250 read from T0547.t2k.many.frag # found chain 2ffeA in template set Warning: unaligning (T0547)G395 (2ffeA)F259 because E (beta_S) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 2ffeA 251 :YYQDFLDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=43659 # 1bf5A.387.161 read from T0547.t2k.many.frag # found chain 1bf5A in template set T0547 387 :SILTLFDLG 1bf5A 311 :QLIQSSFVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43660 # 1g5hA.387.362 read from T0547.t2k.many.frag # found chain 1g5hA in template set Warning: unaligning (T0547)D393 (1g5hA)I385 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1g5hA)V387 because E (beta_S) conformation "forbidden" or filtered. T0547 387 :SILTLF 1g5hA 379 :ELLENG T0547 394 :L 1g5hA 386 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=43662 # 1nnlA.387.203 read from T0547.t2k.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)G395 (1nnlA)Y212 because E (beta_S) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1nnlA 204 :QVKDNAKW Number of specific fragments extracted= 1 number of extra gaps= 1 total=43663 # 1kcfA.387.196 read from T0547.t2k.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)F392 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0547 387 :SILTL 1kcfA 197 :ELIDG T0547 393 :DLG 1kcfA 203 :KIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=43665 # 1vhtA.387.165 read from T0547.t2k.many.frag # found chain 1vhtA in training set T0547 387 :SILTLFDLG 1vhtA 164 :ARLAVADDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43666 # 2nacA.387.242 read from T0547.t2k.many.frag # found chain 2nacA in template set T0547 387 :SILTLFDLG 2nacA 243 :DMYPVCDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43667 # 1ynfA.387.429 read from T0547.t2k.many.frag # found chain 1ynfA in template set T0547 387 :SILTLFDLG 1ynfA 419 :EGREALDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43668 # 1nofA.387.188 read from T0547.t2k.many.frag # found chain 1nofA in training set T0547 387 :SILTLFDLG 1nofA 219 :DASKYVSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=43669 # 2c1vA.387.42 read from T0547.t2k.many.frag # found chain 2c1vA in training set T0547 387 :SILTLFDLG 2c1vA 43 :EKIELGKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43670 # 1no7A.387.438 read from T0547.t2k.many.frag # found chain 1no7A in template set T0547 387 :SILTLFDLG 1no7A 889 :PAMLTLQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43671 # 1rx0A.387.125 read from T0547.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0547)L391 (1rx0A)M130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1rx0A)A134 because E (beta_S) conformation "forbidden" or filtered. T0547 387 :SILT 1rx0A 126 :PLCT T0547 392 :FDL 1rx0A 131 :EKF Number of specific fragments extracted= 2 number of extra gaps= 2 total=43673 1kcmA expands to /projects/compbio/data/pdb/1kcm.pdb.gz 1kcmA:# 1kcmA.387.130 read from T0547.t2k.many.frag # adding 1kcmA to template set # found chain 1kcmA in template set Warning: unaligning (T0547)D393 (1kcmA)E138 because P (beta_P) conformation "forbidden" or filtered. T0547 387 :SILTLF 1kcmA 132 :EAWKHV T0547 394 :LG 1kcmA 139 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=43675 # 1yhtA.387.296 read from T0547.t2k.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1yhtA)N301 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1yhtA)N301 Warning: unaligning (T0547)D393 (1yhtA)D303 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1yhtA)G305 because G (3-10) conformation "forbidden" or filtered. T0547 387 :SIL 1yhtA 297 :DVI T0547 392 :F 1yhtA 302 :W T0547 394 :L 1yhtA 304 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=43678 # 1sqwA.387.61 read from T0547.t2k.many.frag # found chain 1sqwA in template set T0547 387 :SILTLFDLG 1sqwA 62 :KLVSLGTCF Number of specific fragments extracted= 1 number of extra gaps= 0 total=43679 # 1ash.387.32 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 387 :SILTLFDLG 1ash 32 :HMFENYPPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43680 # 1ijbA.387.193 read from T0547.t2k.many.frag # found chain 1ijbA in training set Warning: unaligning (T0547)G395 because last residue in template chain is (1ijbA)A701 T0547 387 :SILTLFDL 1ijbA 693 :YLCDLAPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43681 1i2aA expands to /projects/compbio/data/pdb/1i2a.pdb.gz 1i2aA:# 1i2aA.387.96 read from T0547.t2k.many.frag # adding 1i2aA to template set # found chain 1i2aA in template set Warning: unaligning (T0547)G395 (1i2aA)F105 because E (beta_S) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1i2aA 97 :KIAKAHDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=43682 1yovA expands to /projects/compbio/data/pdb/1yov.pdb.gz 1yovA:# 1yovA.387.244 read from T0547.t2k.many.frag # adding 1yovA to template set # found chain 1yovA in template set T0547 387 :SILTLFDLG 1yovA 242 :DFRDLIRQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43683 # 1iicA.387.244 read from T0547.t2k.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)G395 (1iicA)I286 because Y (epsilon') conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1iicA 278 :RYQSRFEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=43684 # 1e0tA.387.329 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1e0tA)E333 T0547 387 :SI 1e0tA 330 :TI T0547 391 :LFDLG 1e0tA 334 :RTDRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=43686 # 1ho8A.387.398 read from T0547.t2k.many.frag # found chain 1ho8A in template set T0547 387 :SILTLFDLG 1ho8A 397 :QLIELLQAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43687 # 1dozA.387.197 read from T0547.t2k.many.frag # found chain 1dozA in template set T0547 387 :SILTLFDLG 1dozA 199 :QLHESAKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43688 # 1knwA.388.340 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 388 :ILTLFDLGY 1knwA 341 :LCESGDVFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43689 # 1dljA.388.369 read from T0547.t2k.many.frag # found chain 1dljA in training set Warning: unaligning (T0547)G395 (1dljA)I377 because E (beta_S) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1dljA 370 :FKKQANI T0547 396 :Y 1dljA 378 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=43691 # 7odcA.388.358 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 388 :ILTLFDLGY 7odcA 359 :TCDGLDRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43692 # 2ffeA.388.251 read from T0547.t2k.many.frag # found chain 2ffeA in template set T0547 388 :ILTLFDLGY 2ffeA 252 :YQDFLDVFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43693 # 1a4iA.388.204 read from T0547.t2k.many.frag # found chain 1a4iA in training set T0547 388 :ILTLFDLGY 1a4iA 205 :EVNKGDILV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43694 # 1e2kA.388.272 read from T0547.t2k.many.frag # found chain 1e2kA in training set Warning: unaligning (T0547)G395 (1e2kA)F325 because E (beta_S) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1e2kA 318 :RLRSMHV T0547 396 :Y 1e2kA 326 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=43696 # 1bf5A.388.162 read from T0547.t2k.many.frag # found chain 1bf5A in template set T0547 388 :ILTLFDLGY 1bf5A 312 :LIQSSFVVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43697 # 1bc5A.388.186 read from T0547.t2k.many.frag # found chain 1bc5A in template set T0547 388 :ILTLFDLGY 1bc5A 202 :LANYVEFSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43698 # 1vhtA.388.166 read from T0547.t2k.many.frag # found chain 1vhtA in training set T0547 388 :ILTLFDLGY 1vhtA 165 :RLAVADDVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43699 # 1nnlA.388.204 read from T0547.t2k.many.frag # found chain 1nnlA in training set T0547 388 :ILTLFDLGY 1nnlA 205 :VKDNAKWYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43700 # 2nacA.388.243 read from T0547.t2k.many.frag # found chain 2nacA in template set T0547 388 :ILTLFDLGY 2nacA 244 :MYPVCDVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43701 # 1yukA.388.13 read from T0547.t2k.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)F392 (1yukA)G18 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1yukA)C21 because P (beta_P) conformation "forbidden" or filtered. T0547 388 :ILTL 1yukA 14 :CIES T0547 393 :DL 1yukA 19 :PG T0547 396 :Y 1yukA 22 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=43704 # 1kcfA.388.197 read from T0547.t2k.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)F392 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0547 388 :ILTL 1kcfA 198 :LIDG T0547 393 :DLGY 1kcfA 203 :KILF Number of specific fragments extracted= 2 number of extra gaps= 1 total=43706 # 1nofA.388.189 read from T0547.t2k.many.frag # found chain 1nofA in training set T0547 388 :ILTLFDLGY 1nofA 220 :ASKYVSIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43707 # 1sqwA.388.62 read from T0547.t2k.many.frag # found chain 1sqwA in template set T0547 388 :ILTLFDLGY 1sqwA 63 :LVSLGTCFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43708 # 1rx0A.388.126 read from T0547.t2k.many.frag # found chain 1rx0A in training set T0547 388 :ILTLFDLGY 1rx0A 127 :LCTMEKFAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43709 # 1g5hA.388.363 read from T0547.t2k.many.frag # found chain 1g5hA in template set Warning: unaligning (T0547)F392 (1g5hA)G384 because L (left) conformation "forbidden" or filtered. T0547 388 :ILTL 1g5hA 380 :LLEN T0547 393 :DLGY 1g5hA 385 :ISVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=43711 # 1i2aA.388.97 read from T0547.t2k.many.frag # found chain 1i2aA in template set T0547 388 :ILTLFDLGY 1i2aA 98 :IAKAHDFFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43712 # 1no7A.388.439 read from T0547.t2k.many.frag # found chain 1no7A in template set T0547 388 :ILTLFDLGY 1no7A 890 :AMLTLQVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43713 # 1kcmA.388.131 read from T0547.t2k.many.frag # found chain 1kcmA in template set Warning: unaligning (T0547)D393 (1kcmA)E138 because P (beta_P) conformation "forbidden" or filtered. T0547 388 :ILTLF 1kcmA 133 :AWKHV T0547 394 :LGY 1kcmA 139 :AIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=43715 # 1yhtA.388.297 read from T0547.t2k.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1yhtA)N301 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1yhtA)N301 T0547 388 :IL 1yhtA 298 :VI T0547 392 :FDLGY 1yhtA 302 :WDLGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=43717 1nuuA expands to /projects/compbio/data/pdb/1nuu.pdb.gz 1nuuA:# 1nuuA.388.155 read from T0547.t2k.many.frag # adding 1nuuA to template set # found chain 1nuuA in template set Warning: unaligning (T0547)D393 (1nuuA)G161 because S (epsilon) conformation "forbidden" or filtered. T0547 388 :ILTLF 1nuuA 156 :IVEKF T0547 394 :LGY 1nuuA 162 :LVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=43719 # 1kyfA.388.70 read from T0547.t2k.many.frag # found chain 1kyfA in training set T0547 388 :ILTLFDLGY 1kyfA 762 :LQTNLNLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43720 # 1evlA.388.320 read from T0547.t2k.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)F392 (1evlA)G566 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1evlA)V569 because E (beta_S) conformation "forbidden" or filtered. T0547 388 :ILTL 1evlA 562 :LSNA T0547 393 :DL 1evlA 567 :IR T0547 396 :Y 1evlA 570 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=43723 # 2c1vA.388.43 read from T0547.t2k.many.frag # found chain 2c1vA in training set T0547 388 :ILTLFDLGY 2c1vA 44 :KIELGKVLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=43724 # 1lc5A.388.314 read from T0547.t2k.many.frag # found chain 1lc5A in training set T0547 388 :ILTLFDLGY 1lc5A 315 :LLTQRILIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43725 1jalA expands to /projects/compbio/data/pdb/1jal.pdb.gz 1jalA:# 1jalA.388.335 read from T0547.t2k.many.frag # adding 1jalA to template set # found chain 1jalA in template set Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)R343 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)R343 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)L344 T0547 388 :ILTLFD 1jalA 336 :AKEAGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=43726 # 1h7sA.388.113 read from T0547.t2k.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G395 (1h7sA)T121 because E (beta_S) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1h7sA 114 :LCALSDV T0547 396 :Y 1h7sA 122 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=43728 # 1ash.388.33 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 388 :ILTLFDLGY 1ash 33 :MFENYPPLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43729 # 1ynfA.388.430 read from T0547.t2k.many.frag # found chain 1ynfA in template set T0547 388 :ILTLFDLGY 1ynfA 420 :GREALDVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=43730 # 1dljA.389.370 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 389 :LTLFDLGYV 1dljA 371 :KKQANIIVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43731 # 7odcA.389.359 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 389 :LTLFDLGYV 7odcA 360 :CDGLDRIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43732 # 1knwA.389.341 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 389 :LTLFDLGYV 1knwA 342 :CESGDVFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43733 # 2ffeA.389.252 read from T0547.t2k.many.frag # found chain 2ffeA in template set Warning: unaligning (T0547)G395 (2ffeA)F259 because E (beta_S) conformation "forbidden" or filtered. T0547 389 :LTLFDL 2ffeA 253 :QDFLDV T0547 396 :YV 2ffeA 260 :VF Number of specific fragments extracted= 2 number of extra gaps= 1 total=43735 # 1a4iA.389.205 read from T0547.t2k.many.frag # found chain 1a4iA in training set T0547 389 :LTLFDLGYV 1a4iA 206 :VNKGDILVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43736 # 1vhtA.389.167 read from T0547.t2k.many.frag # found chain 1vhtA in training set T0547 389 :LTLFDLGYV 1vhtA 166 :LAVADDVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=43737 # 1nnlA.389.205 read from T0547.t2k.many.frag # found chain 1nnlA in training set T0547 389 :LTLFDLGYV 1nnlA 206 :KDNAKWYIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43738 # 1e2kA.389.273 read from T0547.t2k.many.frag # found chain 1e2kA in training set T0547 389 :LTLFDLGYV 1e2kA 319 :LRSMHVFIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43739 # 1nofA.389.190 read from T0547.t2k.many.frag # found chain 1nofA in training set T0547 389 :LTLFDLGYV 1nofA 221 :SKYVSIIGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43740 # 2nacA.389.244 read from T0547.t2k.many.frag # found chain 2nacA in template set T0547 389 :LTLFDLGYV 2nacA 245 :YPVCDVVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43741 # 1bf5A.389.163 read from T0547.t2k.many.frag # found chain 1bf5A in template set Warning: unaligning (T0547)G395 (1bf5A)V319 because N (gamma') conformation "forbidden" or filtered. T0547 389 :LTLFDL 1bf5A 313 :IQSSFV T0547 396 :YV 1bf5A 320 :ER Number of specific fragments extracted= 2 number of extra gaps= 1 total=43743 # 1nuuA.389.156 read from T0547.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0547)D393 (1nuuA)G161 because S (epsilon) conformation "forbidden" or filtered. T0547 389 :LTLF 1nuuA 157 :VEKF T0547 394 :LGYV 1nuuA 162 :LVCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=43745 # 1kyfA.389.71 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)D393 (1kyfA)N767 because E (beta_S) conformation "forbidden" or filtered. T0547 389 :LTLF 1kyfA 763 :QTNL T0547 394 :LGYV 1kyfA 768 :LQTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=43747 # 1sqwA.389.63 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)G395 (1sqwA)F70 because G (3-10) conformation "forbidden" or filtered. T0547 389 :LTLFDL 1sqwA 64 :VSLGTC T0547 396 :YV 1sqwA 71 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=43749 # 1yukA.389.14 read from T0547.t2k.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)G395 (1yukA)C21 because P (beta_P) conformation "forbidden" or filtered. T0547 389 :LTLFDL 1yukA 15 :IESGPG T0547 396 :YV 1yukA 22 :TW Number of specific fragments extracted= 2 number of extra gaps= 1 total=43751 # 1i2aA.389.98 read from T0547.t2k.many.frag # found chain 1i2aA in template set T0547 389 :LTLFDLGYV 1i2aA 99 :AKAHDFFIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43752 # 1jalA.389.336 read from T0547.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)F392 (1jalA)G340 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)R343 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)R343 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)L344 T0547 389 :LTL 1jalA 337 :KEA T0547 393 :D 1jalA 341 :K T0547 397 :V 1jalA 345 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=43755 # 1kcmA.389.132 read from T0547.t2k.many.frag # found chain 1kcmA in template set T0547 389 :LTLFDLGYV 1kcmA 134 :WKHVEAIYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43756 # 1bc5A.389.187 read from T0547.t2k.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D393 (1bc5A)E207 because E (beta_S) conformation "forbidden" or filtered. T0547 389 :LTLF 1bc5A 203 :ANYV T0547 394 :LGYV 1bc5A 208 :FSSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=43758 # 1rdqE.389.156 read from T0547.t2k.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)D393 (1rdqE)D161 because L (left) conformation "forbidden" or filtered. T0547 389 :LTLF 1rdqE 157 :LHSL T0547 394 :LGYV 1rdqE 162 :LIYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=43760 # 1kcfA.389.198 read from T0547.t2k.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)F392 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0547 389 :LTL 1kcfA 199 :IDG T0547 393 :DLGYV 1kcfA 203 :KILFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=43762 # 1no7A.389.440 read from T0547.t2k.many.frag # found chain 1no7A in template set T0547 389 :LTLFDLGYV 1no7A 891 :MLTLQVLAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=43763 # 1vjoA.389.347 read from T0547.t2k.many.frag # found chain 1vjoA in training set Warning: unaligning (T0547)D393 (1vjoA)N340 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1vjoA)E342 because P (beta_P) conformation "forbidden" or filtered. T0547 389 :LTLF 1vjoA 336 :LNEH T0547 394 :L 1vjoA 341 :I T0547 396 :YV 1vjoA 343 :VG Number of specific fragments extracted= 3 number of extra gaps= 2 total=43766 # 1rwhA.389.207 read from T0547.t2k.many.frag # found chain 1rwhA in training set Warning: unaligning (T0547)Y396 (1rwhA)W215 because G (3-10) conformation "forbidden" or filtered. T0547 389 :LTLFDLG 1rwhA 208 :VAGLSQV T0547 397 :V 1rwhA 216 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=43768 # 1rx0A.389.127 read from T0547.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0547)L391 (1rx0A)M130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1rx0A)A134 because E (beta_S) conformation "forbidden" or filtered. T0547 389 :LT 1rx0A 128 :CT T0547 392 :FDL 1rx0A 131 :EKF T0547 396 :YV 1rx0A 135 :SY Number of specific fragments extracted= 3 number of extra gaps= 2 total=43771 # 1ei9A.389.247 read from T0547.t2k.many.frag # found chain 1ei9A in template set Warning: unaligning (T0547)F392 (1ei9A)G278 because T (delta_L) conformation "forbidden" or filtered. T0547 389 :LTL 1ei9A 275 :DKA T0547 393 :DLGYV 1ei9A 279 :QLVFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=43773 # 1yhtA.389.298 read from T0547.t2k.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1yhtA)N301 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1yhtA)N301 T0547 389 :L 1yhtA 299 :I T0547 392 :FDLGYV 1yhtA 302 :WDLGVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=43775 # 1g5hA.389.364 read from T0547.t2k.many.frag # found chain 1g5hA in template set Warning: unaligning (T0547)F392 (1g5hA)G384 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1g5hA)V387 because E (beta_S) conformation "forbidden" or filtered. T0547 389 :LTL 1g5hA 381 :LEN T0547 393 :DL 1g5hA 385 :IS T0547 396 :YV 1g5hA 388 :WP Number of specific fragments extracted= 3 number of extra gaps= 2 total=43778 # 1v8bA.389.309 read from T0547.t2k.many.frag # found chain 1v8bA in template set T0547 389 :LTLFDLGYV 1v8bA 310 :VDKGDFFIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43779 1fy7A expands to /projects/compbio/data/pdb/1fy7.pdb.gz 1fy7A:# 1fy7A.389.94 read from T0547.t2k.many.frag # adding 1fy7A to template set # found chain 1fy7A in template set Warning: unaligning (T0547)G395 (1fy7A)F258 because G (3-10) conformation "forbidden" or filtered. T0547 389 :LTLFDL 1fy7A 252 :CLLSKL T0547 396 :YV 1fy7A 259 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=43781 # 7odcA.390.360 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 390 :TLFDLGYVD 7odcA 361 :DGLDRIVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=43782 # 1dljA.390.371 read from T0547.t2k.many.frag # found chain 1dljA in training set Warning: unaligning (T0547)G395 (1dljA)I377 because E (beta_S) conformation "forbidden" or filtered. T0547 390 :TLFDL 1dljA 372 :KQANI T0547 396 :YVD 1dljA 378 :VTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=43784 # 2ffeA.390.253 read from T0547.t2k.many.frag # found chain 2ffeA in template set Warning: unaligning (T0547)G395 (2ffeA)F259 because E (beta_S) conformation "forbidden" or filtered. T0547 390 :TLFDL 2ffeA 254 :DFLDV T0547 396 :YVD 2ffeA 260 :VFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=43786 # 1knwA.390.342 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 390 :TLFDLGYVD 1knwA 343 :ESGDVFTQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43787 # 1a4iA.390.206 read from T0547.t2k.many.frag # found chain 1a4iA in training set Warning: unaligning (T0547)D398 (1a4iA)A215 because D (zeta) conformation "forbidden" or filtered. T0547 390 :TLFDLGYV 1a4iA 207 :NKGDILVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=43788 # 1vhtA.390.168 read from T0547.t2k.many.frag # found chain 1vhtA in training set T0547 390 :TLFDLGYVD 1vhtA 167 :AVADDVIDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=43789 # 1nnlA.390.206 read from T0547.t2k.many.frag # found chain 1nnlA in training set T0547 390 :TLFDLGYVD 1nnlA 207 :DNAKWYITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43790 # 1e2kA.390.274 read from T0547.t2k.many.frag # found chain 1e2kA in training set Warning: unaligning (T0547)D393 (1e2kA)H323 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1e2kA)F325 because E (beta_S) conformation "forbidden" or filtered. T0547 390 :TLF 1e2kA 320 :RSM T0547 394 :L 1e2kA 324 :V T0547 396 :YVD 1e2kA 326 :ILD Number of specific fragments extracted= 3 number of extra gaps= 2 total=43793 # 1kyfA.390.72 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)Y396 (1kyfA)T770 because Y (epsilon') conformation "forbidden" or filtered. T0547 390 :TLFDLG 1kyfA 764 :TNLNLQ T0547 397 :VD 1kyfA 771 :KP Number of specific fragments extracted= 2 number of extra gaps= 1 total=43795 # 1nuuA.390.157 read from T0547.t2k.many.frag # found chain 1nuuA in template set T0547 390 :TLFDLGYVD 1nuuA 158 :EKFGLVCVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43796 # 2nacA.390.245 read from T0547.t2k.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)G395 (2nacA)V251 because E (beta_S) conformation "forbidden" or filtered. T0547 390 :TLFDL 2nacA 246 :PVCDV T0547 396 :YVD 2nacA 252 :TLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=43798 # 1sqwA.390.64 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)G395 (1sqwA)F70 because G (3-10) conformation "forbidden" or filtered. T0547 390 :TLFDL 1sqwA 65 :SLGTC T0547 396 :YVD 1sqwA 71 :GKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=43800 # 1nofA.390.191 read from T0547.t2k.many.frag # found chain 1nofA in training set T0547 390 :TLFDLGYVD 1nofA 222 :KYVSIIGGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=43801 # 1i2aA.390.99 read from T0547.t2k.many.frag # found chain 1i2aA in template set Warning: unaligning (T0547)G395 (1i2aA)F105 because E (beta_S) conformation "forbidden" or filtered. T0547 390 :TLFDL 1i2aA 100 :KAHDF T0547 396 :YVD 1i2aA 106 :IAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=43803 # 1ei9A.390.248 read from T0547.t2k.many.frag # found chain 1ei9A in template set Warning: unaligning (T0547)F392 (1ei9A)G278 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1ei9A)V281 because E (beta_S) conformation "forbidden" or filtered. T0547 390 :TL 1ei9A 276 :KA T0547 393 :DL 1ei9A 279 :QL T0547 396 :YVD 1ei9A 282 :FLA Number of specific fragments extracted= 3 number of extra gaps= 2 total=43806 # 1rdqE.390.157 read from T0547.t2k.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)G395 (1rdqE)I163 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V397 (1rdqE)R165 because T (delta_L) conformation "forbidden" or filtered. T0547 390 :TLFDL 1rdqE 158 :HSLDL T0547 396 :Y 1rdqE 164 :Y T0547 398 :D 1rdqE 166 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=43809 # 1bf5A.390.164 read from T0547.t2k.many.frag # found chain 1bf5A in template set T0547 390 :TLFDLGYVD 1bf5A 314 :QSSFVVERQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43810 # 1jalA.390.337 read from T0547.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)F392 (1jalA)G340 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)R343 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)R343 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)L344 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)K347 T0547 390 :TL 1jalA 338 :EA T0547 393 :D 1jalA 341 :K T0547 397 :V 1jalA 345 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=43813 # 1wleA.390.192 read from T0547.t2k.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)G395 (1wleA)I198 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V397 (1wleA)Q200 because G (3-10) conformation "forbidden" or filtered. T0547 390 :TLFDL 1wleA 193 :EKLDI T0547 396 :Y 1wleA 199 :R T0547 398 :D 1wleA 201 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=43816 # 1musA.390.201 read from T0547.t2k.many.frag # found chain 1musA in template set Warning: unaligning (T0547)F392 (1musA)N204 because L (left) conformation "forbidden" or filtered. T0547 390 :TL 1musA 202 :AH T0547 393 :DLGYVD 1musA 205 :ERFVVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=43818 # 1yukA.390.15 read from T0547.t2k.many.frag # found chain 1yukA in training set T0547 390 :TLFDLGYVD 1yukA 16 :ESGPGCTWC Number of specific fragments extracted= 1 number of extra gaps= 0 total=43819 # 1yhtA.390.299 read from T0547.t2k.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1yhtA)N301 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1yhtA)N301 Warning: unaligning (T0547)G395 (1yhtA)G305 because G (3-10) conformation "forbidden" or filtered. T0547 392 :FDL 1yhtA 302 :WDL T0547 396 :YVD 1yhtA 306 :VWD Number of specific fragments extracted= 2 number of extra gaps= 2 total=43821 # 1no7A.390.441 read from T0547.t2k.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)D398 (1no7A)N900 because D (zeta) conformation "forbidden" or filtered. T0547 390 :TLFDLGYV 1no7A 892 :LTLQVLAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=43822 # 1rx0A.390.128 read from T0547.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0547)T390 (1rx0A)T129 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1rx0A)A134 because E (beta_S) conformation "forbidden" or filtered. T0547 391 :LFDL 1rx0A 130 :MEKF T0547 396 :YVD 1rx0A 135 :SYC Number of specific fragments extracted= 2 number of extra gaps= 2 total=43824 # 1kcmA.390.133 read from T0547.t2k.many.frag # found chain 1kcmA in template set T0547 390 :TLFDLGYVD 1kcmA 135 :KHVEAIYID Number of specific fragments extracted= 1 number of extra gaps= 0 total=43825 # 1fy7A.390.95 read from T0547.t2k.many.frag # found chain 1fy7A in template set T0547 390 :TLFDLGYVD 1fy7A 253 :LLSKLFLDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=43826 # 1gmlA.390.116 read from T0547.t2k.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)D393 (1gmlA)G328 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1gmlA)R330 because E (beta_S) conformation "forbidden" or filtered. T0547 390 :TLF 1gmlA 325 :RAC T0547 394 :L 1gmlA 329 :A T0547 396 :YVD 1gmlA 331 :IVS Number of specific fragments extracted= 3 number of extra gaps= 2 total=43829 # 1rwhA.390.208 read from T0547.t2k.many.frag # found chain 1rwhA in training set T0547 390 :TLFDLGYVD 1rwhA 209 :AGLSQVWQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43830 # 1w23A.390.184 read from T0547.t2k.many.frag # found chain 1w23A in training set T0547 390 :TLFDLGYVD 1w23A 185 :NQFGMIYAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43831 # 1yroB.390.185 read from T0547.t2k.many.frag # found chain 1yroB in template set Warning: unaligning (T0547)D393 (1yroB)N305 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1yroB)F307 because P (beta_P) conformation "forbidden" or filtered. T0547 390 :TLF 1yroB 302 :LSI T0547 394 :L 1yroB 306 :G T0547 396 :YVD 1yroB 308 :PNN Number of specific fragments extracted= 3 number of extra gaps= 2 total=43834 # 7odcA.391.361 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D398 (7odcA)R369 because E (beta_S) conformation "forbidden" or filtered. T0547 391 :LFDLGYV 7odcA 362 :GLDRIVE T0547 399 :L 7odcA 370 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=43836 # 1dljA.391.372 read from T0547.t2k.many.frag # found chain 1dljA in training set Warning: unaligning (T0547)G395 (1dljA)I377 because E (beta_S) conformation "forbidden" or filtered. T0547 391 :LFDL 1dljA 373 :QANI T0547 396 :YVDL 1dljA 378 :VTNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=43838 # 2ffeA.391.254 read from T0547.t2k.many.frag # found chain 2ffeA in template set Warning: unaligning (T0547)G395 (2ffeA)F259 because E (beta_S) conformation "forbidden" or filtered. T0547 391 :LFDL 2ffeA 255 :FLDV T0547 396 :YVDL 2ffeA 260 :VFDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=43840 # 1knwA.391.343 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 391 :LFDLGYVDL 1knwA 344 :SGDVFTQQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43841 # 1kyfA.391.73 read from T0547.t2k.many.frag # found chain 1kyfA in training set T0547 391 :LFDLGYVDL 1kyfA 765 :NLNLQTKPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43842 # 1a4iA.391.207 read from T0547.t2k.many.frag # found chain 1a4iA in training set Warning: unaligning (T0547)G395 (1a4iA)L212 because E (beta_S) conformation "forbidden" or filtered. T0547 391 :LFDL 1a4iA 208 :KGDI T0547 396 :YVDL 1a4iA 213 :VVAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=43844 # 1e2kA.391.275 read from T0547.t2k.many.frag # found chain 1e2kA in training set T0547 391 :LFDLGYVDL 1e2kA 321 :SMHVFILDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43845 # 1nnlA.391.207 read from T0547.t2k.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)G395 (1nnlA)Y212 because E (beta_S) conformation "forbidden" or filtered. T0547 391 :LFDL 1nnlA 208 :NAKW T0547 396 :YVDL 1nnlA 213 :ITDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=43847 # 1nuuA.391.158 read from T0547.t2k.many.frag # found chain 1nuuA in template set T0547 391 :LFDLGYVDL 1nuuA 159 :KFGLVCVGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43848 # 1gmlA.391.117 read from T0547.t2k.many.frag # found chain 1gmlA in template set T0547 391 :LFDLGYVDL 1gmlA 326 :ACGARIVSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43849 # 1ei9A.391.249 read from T0547.t2k.many.frag # found chain 1ei9A in template set Warning: unaligning (T0547)G395 (1ei9A)V281 because E (beta_S) conformation "forbidden" or filtered. T0547 391 :LFDL 1ei9A 277 :AGQL T0547 396 :YVDL 1ei9A 282 :FLAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=43851 # 1sqwA.391.65 read from T0547.t2k.many.frag # found chain 1sqwA in template set T0547 391 :LFDLGYVDL 1sqwA 66 :LGTCFGKFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43852 # 1vhtA.391.169 read from T0547.t2k.many.frag # found chain 1vhtA in training set T0547 391 :LFDLGYVDL 1vhtA 168 :VADDVIDNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=43853 # 1rdqE.391.158 read from T0547.t2k.many.frag # found chain 1rdqE in training set T0547 391 :LFDLGYVDL 1rdqE 159 :SLDLIYRDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43854 # 1wleA.391.193 read from T0547.t2k.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)D398 (1wleA)K201 because P (beta_P) conformation "forbidden" or filtered. T0547 391 :LFDLGYV 1wleA 194 :KLDIIRQ T0547 399 :L 1wleA 202 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=43856 # 2nacA.391.246 read from T0547.t2k.many.frag # found chain 2nacA in template set T0547 391 :LFDLGYVDL 2nacA 247 :VCDVVTLNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=43857 # 1i2aA.391.100 read from T0547.t2k.many.frag # found chain 1i2aA in template set Warning: unaligning (T0547)G395 (1i2aA)F105 because E (beta_S) conformation "forbidden" or filtered. T0547 391 :LFDL 1i2aA 101 :AHDF T0547 396 :YVDL 1i2aA 106 :IAQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=43859 # 1nofA.391.192 read from T0547.t2k.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)G395 (1nofA)I227 because N (gamma') conformation "forbidden" or filtered. T0547 391 :LFDL 1nofA 223 :YVSI T0547 396 :YVDL 1nofA 228 :GGHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=43861 # 1v71A.391.267 read from T0547.t2k.many.frag # found chain 1v71A in training set T0547 391 :LFDLGYVDL 1v71A 268 :CLKFYAARM Number of specific fragments extracted= 1 number of extra gaps= 0 total=43862 # 1musA.391.202 read from T0547.t2k.many.frag # found chain 1musA in template set Warning: unaligning (T0547)G395 (1musA)F207 because Y (epsilon') conformation "forbidden" or filtered. T0547 391 :LFDL 1musA 203 :HNER T0547 396 :YVDL 1musA 208 :VVRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=43864 # 1fc3A.391.31 read from T0547.t2k.many.frag # found chain 1fc3A in template set T0547 391 :LFDLGYVDL 1fc3A 171 :AIAMVYHDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43865 # 1cfr.391.165 read from T0547.t2k.many.frag # found chain 1cfr in template set T0547 391 :LFDLGYVDL 1cfr 166 :EIDNLYKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=43866 # 1yhtA.391.300 read from T0547.t2k.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1yhtA)N301 Warning: unaligning (T0547)D393 (1yhtA)D303 because Y (epsilon') conformation "forbidden" or filtered. T0547 392 :F 1yhtA 302 :W T0547 394 :LGYVDL 1yhtA 304 :LGVWDG Number of specific fragments extracted= 2 number of extra gaps= 2 total=43868 # 1jalA.391.338 read from T0547.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)F392 (1jalA)G340 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)R343 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)R343 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)L344 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)K347 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)K347 T0547 391 :L 1jalA 339 :A T0547 393 :D 1jalA 341 :K T0547 397 :V 1jalA 345 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=43871 # 1m15A.391.302 read from T0547.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)D393 (1m15A)N305 because L (left) conformation "forbidden" or filtered. T0547 391 :LF 1m15A 303 :KF T0547 394 :LGYVDL 1m15A 306 :LQVRGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=43873 # 1bupA.391.315 read from T0547.t2k.many.frag # found chain 1bupA in training set T0547 391 :LFDLGYVDL 1bupA 316 :PVEKALRDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43874 # 1yroB.391.186 read from T0547.t2k.many.frag # found chain 1yroB in template set Warning: unaligning (T0547)D393 (1yroB)N305 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L394 (1yroB)G306 because S (epsilon) conformation "forbidden" or filtered. T0547 391 :LF 1yroB 303 :SI T0547 395 :GYVDL 1yroB 307 :FPNNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=43876 # 1vjoA.391.349 read from T0547.t2k.many.frag # found chain 1vjoA in training set Warning: unaligning (T0547)G395 (1vjoA)E342 because P (beta_P) conformation "forbidden" or filtered. T0547 391 :LFDL 1vjoA 338 :EHNI T0547 396 :YVDL 1vjoA 343 :VGGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=43878 # 1s4bP.391.360 read from T0547.t2k.many.frag # found chain 1s4bP in template set Warning: unaligning (T0547)D393 (1s4bP)G378 because L (left) conformation "forbidden" or filtered. T0547 391 :LF 1s4bP 376 :LL T0547 394 :LGYVDL 1s4bP 379 :LAFHHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=43880 # 1bf5A.391.165 read from T0547.t2k.many.frag # found chain 1bf5A in template set Warning: unaligning (T0547)D393 (1bf5A)F317 because P (beta_P) conformation "forbidden" or filtered. T0547 391 :LF 1bf5A 315 :SS T0547 394 :LGYVDL 1bf5A 318 :VVERQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=43882 # 7odcA.392.362 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L399 (7odcA)C370 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (7odcA)N371 because E (beta_S) conformation "forbidden" or filtered. T0547 392 :FDLGYVD 7odcA 363 :LDRIVER Number of specific fragments extracted= 1 number of extra gaps= 1 total=43883 # 2ffeA.392.255 read from T0547.t2k.many.frag # found chain 2ffeA in template set Warning: unaligning (T0547)G395 (2ffeA)F259 because E (beta_S) conformation "forbidden" or filtered. T0547 392 :FDL 2ffeA 256 :LDV T0547 396 :YVDLQ 2ffeA 260 :VFDER Number of specific fragments extracted= 2 number of extra gaps= 1 total=43885 # 1dljA.392.373 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 392 :FDLGYVDLQ 1dljA 374 :ANIIVTNRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=43886 # 1kyfA.392.74 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)Y396 (1kyfA)T770 because Y (epsilon') conformation "forbidden" or filtered. T0547 392 :FDLG 1kyfA 766 :LNLQ T0547 397 :VDLQ 1kyfA 771 :KPVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=43888 # 1knwA.392.344 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q400 (1knwA)G353 because T (delta_L) conformation "forbidden" or filtered. T0547 392 :FDLGYVDL 1knwA 345 :GDVFTQQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=43889 # 1a4iA.392.208 read from T0547.t2k.many.frag # found chain 1a4iA in training set Warning: unaligning (T0547)G395 (1a4iA)L212 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1a4iA)G217 because L (left) conformation "forbidden" or filtered. T0547 392 :FDL 1a4iA 209 :GDI T0547 396 :YVDL 1a4iA 213 :VVAT Number of specific fragments extracted= 2 number of extra gaps= 2 total=43891 # 1e2kA.392.276 read from T0547.t2k.many.frag # found chain 1e2kA in training set T0547 392 :FDLGYVDLQ 1e2kA 322 :MHVFILDYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43892 # 1nuuA.392.159 read from T0547.t2k.many.frag # found chain 1nuuA in template set T0547 392 :FDLGYVDLQ 1nuuA 160 :FGLVCVGRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=43893 # 1nnlA.392.208 read from T0547.t2k.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)V397 (1nnlA)T214 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1nnlA)D215 because E (beta_S) conformation "forbidden" or filtered. T0547 392 :FDLGY 1nnlA 209 :AKWYI T0547 399 :LQ 1nnlA 216 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=43895 # 1ei9A.392.250 read from T0547.t2k.many.frag # found chain 1ei9A in template set Warning: unaligning (T0547)F392 (1ei9A)G278 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1ei9A)V281 because E (beta_S) conformation "forbidden" or filtered. T0547 393 :DL 1ei9A 279 :QL T0547 396 :YVDLQ 1ei9A 282 :FLALE Number of specific fragments extracted= 2 number of extra gaps= 2 total=43897 # 1v71A.392.268 read from T0547.t2k.many.frag # found chain 1v71A in training set Warning: unaligning (T0547)Q400 (1v71A)K277 because L (left) conformation "forbidden" or filtered. T0547 392 :FDLGYVDL 1v71A 269 :LKFYAARM Number of specific fragments extracted= 1 number of extra gaps= 1 total=43898 # 1gmlA.392.118 read from T0547.t2k.many.frag # found chain 1gmlA in template set T0547 392 :FDLGYVDLQ 1gmlA 327 :CGARIVSRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=43899 # 1rdqE.392.159 read from T0547.t2k.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)G395 (1rdqE)I163 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V397 (1rdqE)R165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1rdqE)D166 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1rdqE)K168 because Y (epsilon') conformation "forbidden" or filtered. T0547 392 :FDL 1rdqE 160 :LDL T0547 396 :Y 1rdqE 164 :Y T0547 399 :L 1rdqE 167 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=43902 # 1sqwA.392.66 read from T0547.t2k.many.frag # found chain 1sqwA in template set T0547 392 :FDLGYVDLQ 1sqwA 67 :GTCFGKFTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43903 # 2nacA.392.247 read from T0547.t2k.many.frag # found chain 2nacA in template set T0547 392 :FDLGYVDLQ 2nacA 248 :CDVVTLNCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=43904 # 1vhtA.392.170 read from T0547.t2k.many.frag # found chain 1vhtA in training set Warning: unaligning (T0547)G395 (1vhtA)V172 because E (beta_S) conformation "forbidden" or filtered. T0547 392 :FDL 1vhtA 169 :ADD T0547 396 :YVDLQ 1vhtA 173 :IDNNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=43906 # 1wleA.392.194 read from T0547.t2k.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)V397 (1wleA)Q200 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L399 (1wleA)R202 because L (left) conformation "forbidden" or filtered. T0547 392 :FDLGY 1wleA 195 :LDIIR T0547 398 :D 1wleA 201 :K T0547 400 :Q 1wleA 203 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=43909 # 1fc3A.392.32 read from T0547.t2k.many.frag # found chain 1fc3A in template set Warning: unaligning (T0547)D398 (1fc3A)D178 because D (zeta) conformation "forbidden" or filtered. T0547 392 :FDLGYV 1fc3A 172 :IAMVYH T0547 399 :LQ 1fc3A 179 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=43911 # 1i2aA.392.101 read from T0547.t2k.many.frag # found chain 1i2aA in template set T0547 392 :FDLGYVDLQ 1i2aA 102 :HDFFIAQAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43912 # 1jalA.392.339 read from T0547.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)F392 (1jalA)G340 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)R343 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)R343 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)L344 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)K347 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)K347 T0547 393 :D 1jalA 341 :K T0547 397 :V 1jalA 345 :E T0547 400 :Q 1jalA 348 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=43915 # 1nofA.392.193 read from T0547.t2k.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)G395 (1nofA)I227 because N (gamma') conformation "forbidden" or filtered. T0547 392 :FDL 1nofA 224 :VSI T0547 396 :YVDLQ 1nofA 228 :GGHLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=43917 # 1bupA.392.316 read from T0547.t2k.many.frag # found chain 1bupA in training set T0547 392 :FDLGYVDLQ 1bupA 317 :VEKALRDAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43918 # 1musA.392.203 read from T0547.t2k.many.frag # found chain 1musA in template set Warning: unaligning (T0547)F392 (1musA)N204 because L (left) conformation "forbidden" or filtered. T0547 393 :DLGYVDLQ 1musA 205 :ERFVVRSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=43919 # 1bc5A.392.190 read from T0547.t2k.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)G395 (1bc5A)S209 because Y (epsilon') conformation "forbidden" or filtered. T0547 392 :FDL 1bc5A 206 :VEF T0547 396 :YVDLQ 1bc5A 210 :SVNLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=43921 # 1k92A.392.174 read from T0547.t2k.many.frag # found chain 1k92A in training set T0547 392 :FDLGYVDLQ 1k92A 175 :MIACGFDYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=43922 # 1s4bP.392.361 read from T0547.t2k.many.frag # found chain 1s4bP in template set Warning: unaligning (T0547)F392 (1s4bP)L377 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D393 (1s4bP)G378 because L (left) conformation "forbidden" or filtered. T0547 394 :LGYVDLQ 1s4bP 379 :LAFHHEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=43923 # 1m15A.392.303 read from T0547.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)D393 (1m15A)N305 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1m15A)Q307 because E (beta_S) conformation "forbidden" or filtered. T0547 392 :F 1m15A 304 :F T0547 394 :L 1m15A 306 :L T0547 396 :YVDLQ 1m15A 308 :VRGTR Number of specific fragments extracted= 3 number of extra gaps= 2 total=43926 # 1fy7A.392.97 read from T0547.t2k.many.frag # found chain 1fy7A in template set T0547 392 :FDLGYVDLQ 1fy7A 255 :SKLFLDHKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=43927 # 1gttA.392.168 read from T0547.t2k.many.frag # found chain 1gttA in training set T0547 392 :FDLGYVDLQ 1gttA 169 :GDAILLGTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=43928 # 1cfr.392.166 read from T0547.t2k.many.frag # found chain 1cfr in template set T0547 392 :FDLGYVDLQ 1cfr 167 :IDNLYKNFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=43929 # 2ffeA.393.256 read from T0547.t2k.many.frag # found chain 2ffeA in template set T0547 393 :DLGYVDLQD 2ffeA 257 :DVFVFDERD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43930 # 1kyfA.393.75 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)G395 (1kyfA)Q769 because E (beta_S) conformation "forbidden" or filtered. T0547 393 :DL 1kyfA 767 :NL T0547 396 :YVDLQD 1kyfA 770 :TKPVDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=43932 # 1dljA.393.374 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 393 :DLGYVDLQD 1dljA 375 :NIIVTNRYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=43933 # 7odcA.393.363 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 393 :DLGYVDLQD 7odcA 364 :DRIVERCNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43934 # 1a4iA.393.209 read from T0547.t2k.many.frag # found chain 1a4iA in training set Warning: unaligning (T0547)Q400 (1a4iA)G217 because L (left) conformation "forbidden" or filtered. T0547 393 :DLGYVDL 1a4iA 210 :DILVVAT T0547 401 :D 1a4iA 218 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=43936 # 1nuuA.393.160 read from T0547.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0547)D393 (1nuuA)G161 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1nuuA)V163 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1nuuA)G166 because P (beta_P) conformation "forbidden" or filtered. T0547 394 :L 1nuuA 162 :L T0547 396 :YV 1nuuA 164 :CV T0547 399 :LQD 1nuuA 167 :RVS Number of specific fragments extracted= 3 number of extra gaps= 3 total=43939 # 1e2kA.393.277 read from T0547.t2k.many.frag # found chain 1e2kA in training set Warning: unaligning (T0547)D401 (1e2kA)Q331 because Y (epsilon') conformation "forbidden" or filtered. T0547 393 :DLGYVDLQ 1e2kA 323 :HVFILDYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=43940 # 1vhtA.393.171 read from T0547.t2k.many.frag # found chain 1vhtA in training set T0547 393 :DLGYVDLQD 1vhtA 170 :DDVIDNNGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43941 # 1ei9A.393.251 read from T0547.t2k.many.frag # found chain 1ei9A in template set Warning: unaligning (T0547)G395 (1ei9A)V281 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L399 (1ei9A)L285 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1ei9A)G287 because S (epsilon) conformation "forbidden" or filtered. T0547 393 :DL 1ei9A 279 :QL T0547 396 :YVD 1ei9A 282 :FLA T0547 400 :Q 1ei9A 286 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=43944 # 1v71A.393.269 read from T0547.t2k.many.frag # found chain 1v71A in training set Warning: unaligning (T0547)Q400 (1v71A)K277 because L (left) conformation "forbidden" or filtered. T0547 393 :DLGYVDL 1v71A 270 :KFYAARM T0547 401 :D 1v71A 278 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=43946 # 2nacA.393.248 read from T0547.t2k.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)D401 (2nacA)L257 because P (beta_P) conformation "forbidden" or filtered. T0547 393 :DLGYVDLQ 2nacA 249 :DVVTLNCP Number of specific fragments extracted= 1 number of extra gaps= 1 total=43947 # 1gmlA.393.119 read from T0547.t2k.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)D393 (1gmlA)G328 because T (delta_L) conformation "forbidden" or filtered. T0547 394 :LGYVDLQD 1gmlA 329 :ARIVSRPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=43948 # 1knwA.393.345 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 393 :DLGYVDLQD 1knwA 346 :DVFTQQEGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43949 # 1nnlA.393.209 read from T0547.t2k.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)D398 (1nnlA)D215 because E (beta_S) conformation "forbidden" or filtered. T0547 393 :DLGYV 1nnlA 210 :KWYIT T0547 399 :LQD 1nnlA 216 :FVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=43951 # 1gttA.393.169 read from T0547.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0547)D398 (1gttA)G175 because S (epsilon) conformation "forbidden" or filtered. T0547 393 :DLGYV 1gttA 170 :DAILL T0547 399 :LQD 1gttA 176 :TPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=43953 # 1musA.393.204 read from T0547.t2k.many.frag # found chain 1musA in template set Warning: unaligning (T0547)G395 (1musA)F207 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1musA)R210 because P (beta_P) conformation "forbidden" or filtered. T0547 393 :DL 1musA 205 :ER T0547 396 :YV 1musA 208 :VV T0547 399 :LQD 1musA 211 :SKH Number of specific fragments extracted= 3 number of extra gaps= 2 total=43956 # 1sqwA.393.67 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)G395 (1sqwA)F70 because G (3-10) conformation "forbidden" or filtered. T0547 393 :DL 1sqwA 68 :TC T0547 396 :YVDLQD 1sqwA 71 :GKFTKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=43958 # 1jalA.393.340 read from T0547.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)R343 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)R343 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)L344 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)K347 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)K347 T0547 393 :D 1jalA 341 :K T0547 397 :V 1jalA 345 :E T0547 400 :QD 1jalA 348 :DY Number of specific fragments extracted= 3 number of extra gaps= 2 total=43961 1dmuA expands to /projects/compbio/data/pdb/1dmu.pdb.gz 1dmuA:# 1dmuA.393.102 read from T0547.t2k.many.frag # adding 1dmuA to template set # found chain 1dmuA in template set T0547 393 :DLGYVDLQD 1dmuA 103 :DITVREIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43962 # 1s4bP.393.362 read from T0547.t2k.many.frag # found chain 1s4bP in template set T0547 393 :DLGYVDLQD 1s4bP 378 :GLAFHHEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=43963 # 1nofA.393.194 read from T0547.t2k.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)V397 (1nofA)G229 because Y (epsilon') conformation "forbidden" or filtered. T0547 393 :DLGY 1nofA 225 :SIIG T0547 398 :DLQD 1nofA 230 :HLYG Number of specific fragments extracted= 2 number of extra gaps= 1 total=43965 # 1rdqE.393.160 read from T0547.t2k.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)D393 (1rdqE)D161 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1rdqE)I163 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1rdqE)K168 because Y (epsilon') conformation "forbidden" or filtered. T0547 394 :L 1rdqE 162 :L T0547 396 :YVDL 1rdqE 164 :YRDL T0547 401 :D 1rdqE 169 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=43968 # 1fc3A.393.33 read from T0547.t2k.many.frag # found chain 1fc3A in template set T0547 393 :DLGYVDLQD 1fc3A 173 :AMVYHDIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43969 1who expands to /projects/compbio/data/pdb/1who.pdb.gz 1who:Warning: there is no chain 1who will retry with 1whoA # 1who.393.49 read from T0547.t2k.many.frag # adding 1who to template set # found chain 1who in template set Warning: unaligning (T0547)D393 (1who)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 394 :LGYVDLQD 1who 51 :VWTFDSEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=43970 # 1i2aA.393.102 read from T0547.t2k.many.frag # found chain 1i2aA in template set T0547 393 :DLGYVDLQD 1i2aA 103 :DFFIAQADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=43971 # 1bc5A.393.191 read from T0547.t2k.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)G395 (1bc5A)S209 because Y (epsilon') conformation "forbidden" or filtered. T0547 393 :DL 1bc5A 207 :EF T0547 396 :YVDLQD 1bc5A 210 :SVNLLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=43973 # 1k92A.393.175 read from T0547.t2k.many.frag # found chain 1k92A in training set Warning: unaligning (T0547)Y396 (1k92A)G179 because T (delta_L) conformation "forbidden" or filtered. T0547 393 :DLG 1k92A 176 :IAC T0547 397 :VDLQD 1k92A 180 :FDYKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=43975 # 1d3yA.393.146 read from T0547.t2k.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)D393 (1d3yA)N215 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1d3yA)K222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1d3yA)G223 because S (epsilon) conformation "forbidden" or filtered. T0547 394 :LGYVDL 1d3yA 216 :CILVSL Number of specific fragments extracted= 1 number of extra gaps= 2 total=43976 # 1ogoX.393.18 read from T0547.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0547)Q400 (1ogoX)Q26 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1ogoX)T27 because Y (epsilon') conformation "forbidden" or filtered. T0547 393 :DLGYVDL 1ogoX 19 :DSGEINT Number of specific fragments extracted= 1 number of extra gaps= 1 total=43977 # 1m15A.393.304 read from T0547.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)D393 (1m15A)N305 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1m15A)G310 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1m15A)G313 because S (epsilon) conformation "forbidden" or filtered. T0547 394 :LGYV 1m15A 306 :LQVR T0547 399 :LQ 1m15A 311 :TR Number of specific fragments extracted= 2 number of extra gaps= 3 total=43979 # 2ffeA.394.257 read from T0547.t2k.many.frag # found chain 2ffeA in template set T0547 394 :LGYVDLQDR 2ffeA 258 :VFVFDERDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=43980 # 1kyfA.394.76 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)Y396 (1kyfA)T770 because Y (epsilon') conformation "forbidden" or filtered. T0547 394 :LG 1kyfA 768 :LQ T0547 397 :VDLQDR 1kyfA 771 :KPVDPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=43982 # 1dljA.394.375 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 394 :LGYVDLQDR 1dljA 376 :IIVTNRYDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=43983 # 1nuuA.394.161 read from T0547.t2k.many.frag # found chain 1nuuA in template set T0547 394 :LGYVDLQDR 1nuuA 162 :LVCVGRVSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=43984 # 1gttA.394.170 read from T0547.t2k.many.frag # found chain 1gttA in training set T0547 394 :LGYVDLQDR 1gttA 171 :AILLGTPQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=43985 # 7odcA.394.364 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L399 (7odcA)C370 because Y (epsilon') conformation "forbidden" or filtered. T0547 394 :LGYVD 7odcA 365 :RIVER T0547 400 :QDR 7odcA 371 :NLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=43987 # 1e2kA.394.278 read from T0547.t2k.many.frag # found chain 1e2kA in training set Warning: unaligning (T0547)D401 (1e2kA)Q331 because Y (epsilon') conformation "forbidden" or filtered. T0547 394 :LGYVDLQ 1e2kA 324 :VFILDYD T0547 402 :R 1e2kA 332 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=43989 # 1ei9A.394.252 read from T0547.t2k.many.frag # found chain 1ei9A in template set Warning: unaligning (T0547)D401 (1ei9A)G287 because S (epsilon) conformation "forbidden" or filtered. T0547 394 :LGYVDLQ 1ei9A 280 :LVFLALE T0547 402 :R 1ei9A 288 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=43991 # 1a4iA.394.210 read from T0547.t2k.many.frag # found chain 1a4iA in training set Warning: unaligning (T0547)G395 (1a4iA)L212 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1a4iA)G217 because L (left) conformation "forbidden" or filtered. T0547 394 :L 1a4iA 211 :I T0547 396 :YVDL 1a4iA 213 :VVAT T0547 401 :DR 1a4iA 218 :QP Number of specific fragments extracted= 3 number of extra gaps= 2 total=43994 # 1who.394.50 read from T0547.t2k.many.frag # found chain 1who in template set Warning: unaligning (T0547)G395 (1who)W52 because E (beta_S) conformation "forbidden" or filtered. T0547 394 :L 1who 51 :V T0547 396 :YVDLQDR 1who 53 :TFDSEEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=43996 # 1gmlA.394.120 read from T0547.t2k.many.frag # found chain 1gmlA in template set T0547 394 :LGYVDLQDR 1gmlA 329 :ARIVSRPEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=43997 # 1nofA.394.195 read from T0547.t2k.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)G395 (1nofA)I227 because N (gamma') conformation "forbidden" or filtered. T0547 394 :L 1nofA 226 :I T0547 396 :YVDLQDR 1nofA 228 :GGHLYGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=43999 # 1jalA.394.341 read from T0547.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)R343 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)R343 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)L344 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)K347 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)K347 Warning: unaligning (T0547)D401 (1jalA)Y349 because P (beta_P) conformation "forbidden" or filtered. T0547 397 :V 1jalA 345 :E T0547 400 :Q 1jalA 348 :D T0547 402 :R 1jalA 350 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=44002 # 1musA.394.205 read from T0547.t2k.many.frag # found chain 1musA in template set T0547 394 :LGYVDLQDR 1musA 206 :RFVVRSKHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=44003 # 1sqwA.394.68 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)R402 (1sqwA)H77 because L (left) conformation "forbidden" or filtered. T0547 394 :LGYVDLQD 1sqwA 69 :CFGKFTKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=44004 # 1bc5A.394.192 read from T0547.t2k.many.frag # found chain 1bc5A in template set T0547 394 :LGYVDLQDR 1bc5A 208 :FSSVNLLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=44005 # 1vhtA.394.172 read from T0547.t2k.many.frag # found chain 1vhtA in training set Warning: unaligning (T0547)G395 (1vhtA)V172 because E (beta_S) conformation "forbidden" or filtered. T0547 394 :L 1vhtA 171 :D T0547 396 :YVDLQDR 1vhtA 173 :IDNNGAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=44007 # 1s4bP.394.363 read from T0547.t2k.many.frag # found chain 1s4bP in template set Warning: unaligning (T0547)D401 (1s4bP)G386 because T (delta_L) conformation "forbidden" or filtered. T0547 394 :LGYVDLQ 1s4bP 379 :LAFHHEE T0547 402 :R 1s4bP 387 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=44009 # 1v71A.394.270 read from T0547.t2k.many.frag # found chain 1v71A in training set Warning: unaligning (T0547)Q400 (1v71A)K277 because L (left) conformation "forbidden" or filtered. T0547 394 :LGYVDL 1v71A 271 :FYAARM T0547 401 :DR 1v71A 278 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44011 # 1d3yA.394.147 read from T0547.t2k.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)Q400 (1d3yA)K222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1d3yA)G223 because S (epsilon) conformation "forbidden" or filtered. T0547 394 :LGYVDL 1d3yA 216 :CILVSL T0547 402 :R 1d3yA 224 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=44013 # 2nacA.394.249 read from T0547.t2k.many.frag # found chain 2nacA in template set T0547 394 :LGYVDLQDR 2nacA 250 :VVTLNCPLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=44014 # 1vkyA.394.297 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)L394 (1vkyA)A286 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1vkyA)L287 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1vkyA)L293 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQ 1vkyA 288 :VTNFH T0547 402 :R 1vkyA 294 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=44016 # 1ckmA.394.214 read from T0547.t2k.many.frag # found chain 1ckmA in template set T0547 394 :LGYVDLQDR 1ckmA 215 :LIIMSVDEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=44017 # 1ogoX.394.19 read from T0547.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0547)D401 (1ogoX)T27 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1ogoX)P28 because P (beta_P) conformation "forbidden" or filtered. T0547 394 :LGYVDLQ 1ogoX 20 :SGEINTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=44018 # 1dmuA.394.103 read from T0547.t2k.many.frag # found chain 1dmuA in template set T0547 394 :LGYVDLQDR 1dmuA 104 :ITVREIGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=44019 # 1h7sA.394.119 read from T0547.t2k.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G395 (1h7sA)T121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1h7sA)H126 because P (beta_P) conformation "forbidden" or filtered. T0547 394 :L 1h7sA 120 :V T0547 396 :YVDL 1h7sA 122 :ISTC T0547 401 :DR 1h7sA 127 :AS Number of specific fragments extracted= 3 number of extra gaps= 2 total=44022 1i40A expands to /projects/compbio/data/pdb/1i40.pdb.gz 1i40A:Skipped atom 2, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 4, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 6, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 8, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 10, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 12, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 14, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 16, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 18, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 20, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 22, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 24, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 26, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 28, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 30, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 32, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 34, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 36, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 38, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 40, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 42, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 44, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 46, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 48, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 50, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 52, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 54, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 56, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 58, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 60, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 126, because occupancy 0.500 <= existing 0.500 in 1i40A Skipped atom 128, because occupancy 0.500 <= existing 0.500 in 1i40A Skipped atom 130, because occupancy 0.500 <= existing 0.500 in 1i40A Skipped atom 132, because occupancy 0.500 <= existing 0.500 in 1i40A Skipped atom 134, because occupancy 0.500 <= existing 0.500 in 1i40A Skipped atom 241, because occupancy 0.150 <= existing 0.850 in 1i40A Skipped atom 243, because occupancy 0.150 <= existing 0.850 in 1i40A Skipped atom 245, because occupancy 0.150 <= existing 0.850 in 1i40A Skipped atom 250, because occupancy 0.150 <= existing 0.850 in 1i40A Skipped atom 284, because occupancy 0.300 <= existing 0.500 in 1i40A Skipped atom 285, because occupancy 0.200 <= existing 0.500 in 1i40A Skipped atom 287, because occupancy 0.300 <= existing 0.500 in 1i40A Skipped atom 288, because occupancy 0.200 <= existing 0.500 in 1i40A Skipped atom 290, because occupancy 0.300 <= existing 0.500 in 1i40A Skipped atom 291, because occupancy 0.200 <= existing 0.500 in 1i40A Skipped atom 293, because occupancy 0.300 <= existing 0.500 in 1i40A Skipped atom 294, because occupancy 0.200 <= existing 0.500 in 1i40A Skipped atom 296, because occupancy 0.300 <= existing 0.500 in 1i40A Skipped atom 297, because occupancy 0.200 <= existing 0.500 in 1i40A Skipped atom 328, because occupancy 0.460 <= existing 0.550 in 1i40A Skipped atom 330, because occupancy 0.460 <= existing 0.550 in 1i40A Skipped atom 332, because occupancy 0.460 <= existing 0.550 in 1i40A Skipped atom 334, because occupancy 0.460 <= existing 0.550 in 1i40A Skipped atom 336, because occupancy 0.460 <= existing 0.550 in 1i40A Skipped atom 383, because occupancy 0.400 <= existing 0.600 in 1i40A Skipped atom 385, because occupancy 0.400 <= existing 0.600 in 1i40A Skipped atom 387, because occupancy 0.400 <= existing 0.600 in 1i40A Skipped atom 389, because occupancy 0.400 <= existing 0.600 in 1i40A Skipped atom 417, because occupancy 0.470 <= existing 0.530 in 1i40A Skipped atom 419, because occupancy 0.470 <= existing 0.530 in 1i40A Skipped atom 421, because occupancy 0.470 <= existing 0.530 in 1i40A Skipped atom 423, because occupancy 0.470 <= existing 0.530 in 1i40A Skipped atom 669, because occupancy 0.430 <= existing 0.570 in 1i40A Skipped atom 671, because occupancy 0.430 <= existing 0.570 in 1i40A Skipped atom 673, because occupancy 0.430 <= existing 0.570 in 1i40A Skipped atom 675, because occupancy 0.430 <= existing 0.570 in 1i40A Skipped atom 677, because occupancy 0.430 <= existing 0.570 in 1i40A Skipped atom 679, because occupancy 0.430 <= existing 0.570 in 1i40A Skipped atom 681, because occupancy 0.430 <= existing 0.570 in 1i40A Skipped atom 683, because occupancy 0.430 <= existing 0.570 in 1i40A Skipped atom 704, because occupancy 0.480 <= existing 0.520 in 1i40A Skipped atom 706, because occupancy 0.480 <= existing 0.520 in 1i40A Skipped atom 708, because occupancy 0.480 <= existing 0.520 in 1i40A Skipped atom 710, because occupancy 0.480 <= existing 0.520 in 1i40A Skipped atom 712, because occupancy 0.480 <= existing 0.520 in 1i40A Skipped atom 742, because occupancy 0.440 <= existing 0.560 in 1i40A Skipped atom 744, because occupancy 0.440 <= existing 0.560 in 1i40A Skipped atom 746, because occupancy 0.440 <= existing 0.560 in 1i40A Skipped atom 815, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 817, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 819, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 821, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 823, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 875, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 877, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 879, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 881, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 883, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 885, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 887, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 889, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 953, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 955, because occupancy 0.450 <= existing 0.560 in 1i40A Skipped atom 1064, because occupancy 0.470 <= existing 0.530 in 1i40A Skipped atom 1066, because occupancy 0.470 <= existing 0.530 in 1i40A Skipped atom 1068, because occupancy 0.470 <= existing 0.530 in 1i40A Skipped atom 1070, because occupancy 0.470 <= existing 0.530 in 1i40A Skipped atom 1099, because occupancy 0.460 <= existing 0.550 in 1i40A Skipped atom 1101, because occupancy 0.460 <= existing 0.550 in 1i40A Skipped atom 1103, because occupancy 0.460 <= existing 0.550 in 1i40A Skipped atom 1105, because occupancy 0.460 <= existing 0.550 in 1i40A Skipped atom 1107, because occupancy 0.460 <= existing 0.550 in 1i40A Skipped atom 1143, because occupancy 0.150 <= existing 0.850 in 1i40A Skipped atom 1145, because occupancy 0.150 <= existing 0.850 in 1i40A Skipped atom 1147, because occupancy 0.150 <= existing 0.850 in 1i40A Skipped atom 1149, because occupancy 0.150 <= existing 0.850 in 1i40A Skipped atom 1151, because occupancy 0.150 <= existing 0.850 in 1i40A Skipped atom 1233, because occupancy 0.340 <= existing 0.660 in 1i40A Skipped atom 1235, because occupancy 0.340 <= existing 0.660 in 1i40A Skipped atom 1237, because occupancy 0.340 <= existing 0.660 in 1i40A Skipped atom 1239, because occupancy 0.340 <= existing 0.660 in 1i40A Skipped atom 1241, because occupancy 0.340 <= existing 0.660 in 1i40A Skipped atom 1268, because occupancy 0.380 <= existing 0.620 in 1i40A Skipped atom 1270, because occupancy 0.380 <= existing 0.620 in 1i40A Skipped atom 1272, because occupancy 0.380 <= existing 0.620 in 1i40A Skipped atom 1274, because occupancy 0.380 <= existing 0.620 in 1i40A Skipped atom 1276, because occupancy 0.380 <= existing 0.620 in 1i40A Skipped atom 1278, because occupancy 0.380 <= existing 0.620 in 1i40A Skipped atom 1280, because occupancy 0.380 <= existing 0.620 in 1i40A Skipped atom 1282, because occupancy 0.380 <= existing 0.620 in 1i40A Skipped atom 1284, because occupancy 0.380 <= existing 0.620 in 1i40A Skipped atom 1286, because occupancy 0.380 <= existing 0.620 in 1i40A Skipped atom 1288, because occupancy 0.380 <= existing 0.620 in 1i40A Skipped atom 1290, because occupancy 0.380 <= existing 0.620 in 1i40A Skipped atom 1292, because occupancy 0.380 <= existing 0.620 in 1i40A Skipped atom 1328, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 1330, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 1332, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 1334, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 1336, because occupancy 0.280 <= existing 0.720 in 1i40A Skipped atom 1417, because occupancy 0.470 <= existing 0.540 in 1i40A Skipped atom 1419, because occupancy 0.470 <= existing 0.540 in 1i40A Skipped atom 1421, because occupancy 0.470 <= existing 0.540 in 1i40A Skipped atom 1423, because occupancy 0.470 <= existing 0.540 in 1i40A Skipped atom 1425, because occupancy 0.470 <= existing 0.540 in 1i40A # 1i40A.394.69 read from T0547.t2k.many.frag # adding 1i40A to template set # found chain 1i40A in template set Warning: unaligning (T0547)R402 (1i40A)P78 because P (beta_P) conformation "forbidden" or filtered. T0547 394 :LGYVDLQD 1i40A 70 :DVLVPTPY Number of specific fragments extracted= 1 number of extra gaps= 1 total=44023 # 1rdqE.394.161 read from T0547.t2k.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)V397 (1rdqE)R165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1rdqE)K168 because Y (epsilon') conformation "forbidden" or filtered. T0547 394 :LGY 1rdqE 162 :LIY T0547 398 :DL 1rdqE 166 :DL T0547 401 :DR 1rdqE 169 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=44026 # 1nnlA.394.210 read from T0547.t2k.many.frag # found chain 1nnlA in training set T0547 394 :LGYVDLQDR 1nnlA 211 :WYITDFVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44027 # 1m15A.394.305 read from T0547.t2k.many.frag # found chain 1m15A in training set T0547 394 :LGYVDLQDR 1m15A 306 :LQVRGTRGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=44028 # 1kyfA.395.77 read from T0547.t2k.many.frag # found chain 1kyfA in training set T0547 395 :GYVDLQDRS 1kyfA 769 :QTKPVDPTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44029 # 1jalA.395.342 read from T0547.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)R343 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)L344 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)K347 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)K347 T0547 397 :V 1jalA 345 :E T0547 400 :QDRS 1jalA 348 :DYIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=44031 # 1gmlA.395.121 read from T0547.t2k.many.frag # found chain 1gmlA in template set T0547 395 :GYVDLQDRS 1gmlA 330 :RIVSRPEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44032 # 2ffeA.395.258 read from T0547.t2k.many.frag # found chain 2ffeA in template set T0547 395 :GYVDLQDRS 2ffeA 259 :FVFDERDRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44033 # 1i40A.395.70 read from T0547.t2k.many.frag # found chain 1i40A in template set T0547 395 :GYVDLQDRS 1i40A 71 :VLVPTPYPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44034 # 1ogoX.395.20 read from T0547.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0547)G395 (1ogoX)G21 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1ogoX)Q26 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1ogoX)T27 because Y (epsilon') conformation "forbidden" or filtered. T0547 396 :YVDL 1ogoX 22 :EINT T0547 402 :RS 1ogoX 28 :PV Number of specific fragments extracted= 2 number of extra gaps= 2 total=44036 # 1who.395.51 read from T0547.t2k.many.frag # found chain 1who in template set T0547 395 :GYVDLQDRS 1who 52 :WTFDSEEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44037 # 1dmuA.395.104 read from T0547.t2k.many.frag # found chain 1dmuA in template set Warning: unaligning (T0547)G395 (1dmuA)T105 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (1dmuA)T113 because Y (epsilon') conformation "forbidden" or filtered. T0547 396 :YVDLQDR 1dmuA 106 :VREIGLP Number of specific fragments extracted= 1 number of extra gaps= 2 total=44038 # 1ei9A.395.253 read from T0547.t2k.many.frag # found chain 1ei9A in template set T0547 395 :GYVDLQDRS 1ei9A 281 :VFLALEGDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=44039 # 1gttA.395.171 read from T0547.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0547)G395 (1gttA)I172 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1gttA)G175 because S (epsilon) conformation "forbidden" or filtered. T0547 396 :YV 1gttA 173 :LL T0547 399 :LQDRS 1gttA 176 :TPQAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=44041 # 1v71A.395.271 read from T0547.t2k.many.frag # found chain 1v71A in training set Warning: unaligning (T0547)Q400 (1v71A)K277 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1v71A)V279 because P (beta_P) conformation "forbidden" or filtered. T0547 395 :GYVDL 1v71A 272 :YAARM T0547 401 :D 1v71A 278 :I T0547 403 :S 1v71A 280 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=44044 # 1vkyA.395.298 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)D398 (1vkyA)N290 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (1vkyA)R295 because T (delta_L) conformation "forbidden" or filtered. T0547 395 :GYV 1vkyA 287 :LVT T0547 399 :LQDR 1vkyA 291 :FHLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=44046 # 1musA.395.206 read from T0547.t2k.many.frag # found chain 1musA in template set T0547 395 :GYVDLQDRS 1musA 207 :FVVRSKHPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=44047 # 1br9.395.128 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)S403 (1br9)P137 because C (cis) conformation "forbidden" or filtered. T0547 395 :GYVDLQDR 1br9 129 :KITRCPMI Number of specific fragments extracted= 1 number of extra gaps= 1 total=44048 # 1bc5A.395.193 read from T0547.t2k.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D398 (1bc5A)N212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1bc5A)E215 because P (beta_P) conformation "forbidden" or filtered. T0547 395 :GYV 1bc5A 209 :SSV T0547 399 :LQ 1bc5A 213 :LL T0547 402 :RS 1bc5A 216 :KQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=44051 # 1k92A.395.177 read from T0547.t2k.many.frag # found chain 1k92A in training set Warning: unaligning (T0547)Y396 (1k92A)G179 because T (delta_L) conformation "forbidden" or filtered. T0547 395 :G 1k92A 178 :C T0547 397 :VDLQDRS 1k92A 180 :FDYKMSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44053 # 1h7sA.395.120 read from T0547.t2k.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G395 (1h7sA)T121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1h7sA)T124 because Y (epsilon') conformation "forbidden" or filtered. T0547 396 :YV 1h7sA 122 :IS T0547 399 :LQDRS 1h7sA 125 :CHASA Number of specific fragments extracted= 2 number of extra gaps= 2 total=44055 # 1nuuA.395.162 read from T0547.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0547)D398 (1nuuA)G166 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1nuuA)S169 because T (delta_L) conformation "forbidden" or filtered. T0547 395 :GYV 1nuuA 163 :VCV T0547 399 :LQ 1nuuA 167 :RV T0547 402 :RS 1nuuA 170 :HD Number of specific fragments extracted= 3 number of extra gaps= 2 total=44058 # 1dljA.395.376 read from T0547.t2k.many.frag # found chain 1dljA in training set T0547 395 :GYVDLQDRS 1dljA 377 :IVTNRYDNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=44059 # 1d3yA.395.148 read from T0547.t2k.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)Q400 (1d3yA)K222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1d3yA)G223 because S (epsilon) conformation "forbidden" or filtered. T0547 395 :GYVDL 1d3yA 217 :ILVSL T0547 402 :RS 1d3yA 224 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=44061 # 1ckmA.395.215 read from T0547.t2k.many.frag # found chain 1ckmA in template set T0547 395 :GYVDLQDRS 1ckmA 216 :IIMSVDEPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44062 # 1vjoA.395.353 read from T0547.t2k.many.frag # found chain 1vjoA in training set T0547 395 :GYVDLQDRS 1vjoA 342 :EVGGGLGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44063 # 1nnlA.395.211 read from T0547.t2k.many.frag # found chain 1nnlA in training set T0547 395 :GYVDLQDRS 1nnlA 212 :YITDFVELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44064 # 2asbA.395.217 read from T0547.t2k.many.frag # found chain 2asbA in training set T0547 395 :GYVDLQDRS 2asbA 322 :DIRGDAPPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=44065 # 1e2kA.395.279 read from T0547.t2k.many.frag # found chain 1e2kA in training set Warning: unaligning (T0547)D401 (1e2kA)Q331 because Y (epsilon') conformation "forbidden" or filtered. T0547 395 :GYVDLQ 1e2kA 325 :FILDYD T0547 402 :RS 1e2kA 332 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=44067 2bpsA expands to /projects/compbio/data/pdb/2bps.pdb.gz 2bpsA:# 2bpsA.395.37 read from T0547.t2k.many.frag # adding 2bpsA to template set # found chain 2bpsA in template set Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bpsA)P43 Warning: unaligning (T0547)R402 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bpsA)P43 T0547 395 :GYVDLQ 2bpsA 36 :QAQSVS T0547 403 :S 2bpsA 44 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=44069 # 1jbwA.395.274 read from T0547.t2k.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)Q400 (1jbwA)E280 because L (left) conformation "forbidden" or filtered. T0547 395 :GYVDL 1jbwA 275 :YAKQT T0547 401 :DRS 1jbwA 281 :WPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44071 # 1rdqE.395.162 read from T0547.t2k.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)Q400 (1rdqE)K168 because Y (epsilon') conformation "forbidden" or filtered. T0547 395 :GYVDL 1rdqE 163 :IYRDL T0547 401 :DRS 1rdqE 169 :PEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=44073 # 1vhtA.395.173 read from T0547.t2k.many.frag # found chain 1vhtA in training set Warning: unaligning (T0547)G395 (1vhtA)V172 because E (beta_S) conformation "forbidden" or filtered. T0547 396 :YVDLQDRS 1vhtA 173 :IDNNGAPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=44074 # 1s4bP.395.364 read from T0547.t2k.many.frag # found chain 1s4bP in template set Warning: unaligning (T0547)G395 (1s4bP)A380 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1s4bP)G386 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1s4bP)A387 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQ 1s4bP 381 :FHHEE T0547 403 :S 1s4bP 388 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=44076 # 1jalA.396.343 read from T0547.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)L344 Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)K347 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)K347 T0547 397 :V 1jalA 345 :E T0547 400 :QDRSN 1jalA 348 :DYIVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=44078 # 1i40A.396.71 read from T0547.t2k.many.frag # found chain 1i40A in template set Warning: unaligning (T0547)N404 (1i40A)Q80 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQDRS 1i40A 72 :LVPTPYPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=44079 # 1kyfA.396.78 read from T0547.t2k.many.frag # found chain 1kyfA in training set T0547 396 :YVDLQDRSN 1kyfA 770 :TKPVDPTVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=44080 # 1gmlA.396.122 read from T0547.t2k.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)S403 (1gmlA)L338 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQDR 1gmlA 331 :IVSRPEE T0547 404 :N 1gmlA 339 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=44082 # 1ogoX.396.21 read from T0547.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0547)D401 (1ogoX)T27 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (1ogoX)V29 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQ 1ogoX 22 :EINTQ T0547 402 :R 1ogoX 28 :P T0547 404 :N 1ogoX 30 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=44085 # 2bpsA.396.38 read from T0547.t2k.many.frag # found chain 2bpsA in template set Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bpsA)P43 Warning: unaligning (T0547)R402 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bpsA)P43 T0547 396 :YVDLQ 2bpsA 37 :AQSVS T0547 403 :SN 2bpsA 44 :PR Number of specific fragments extracted= 2 number of extra gaps= 1 total=44087 # 1v71A.396.272 read from T0547.t2k.many.frag # found chain 1v71A in training set Warning: unaligning (T0547)Q400 (1v71A)K277 because L (left) conformation "forbidden" or filtered. T0547 396 :YVDL 1v71A 273 :AARM T0547 401 :DRSN 1v71A 278 :IVVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=44089 # 1fm0D.396.58 read from T0547.t2k.many.frag # found chain 1fm0D in training set T0547 396 :YVDLQDRSN 1fm0D 59 :LVSFDHPLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=44090 # 1k92A.396.178 read from T0547.t2k.many.frag # found chain 1k92A in training set Warning: unaligning (T0547)Y396 (1k92A)G179 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1k92A)M184 because P (beta_P) conformation "forbidden" or filtered. T0547 397 :VDLQ 1k92A 180 :FDYK T0547 402 :RSN 1k92A 185 :SVE Number of specific fragments extracted= 2 number of extra gaps= 2 total=44092 # 1vjoA.396.354 read from T0547.t2k.many.frag # found chain 1vjoA in training set Warning: unaligning (T0547)D401 (1vjoA)G348 because S (epsilon) conformation "forbidden" or filtered. T0547 396 :YVDLQ 1vjoA 343 :VGGGL T0547 402 :RSN 1vjoA 349 :ELA Number of specific fragments extracted= 2 number of extra gaps= 1 total=44094 # 1h7sA.396.121 read from T0547.t2k.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)D398 (1h7sA)T124 because Y (epsilon') conformation "forbidden" or filtered. T0547 396 :YV 1h7sA 122 :IS T0547 399 :LQDRSN 1h7sA 125 :CHASAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=44096 # 1who.396.52 read from T0547.t2k.many.frag # found chain 1who in template set T0547 396 :YVDLQDRSN 1who 53 :TFDSEEPLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=44097 # 1ta8A.396.160 read from T0547.t2k.many.frag # found chain 1ta8A in training set Warning: unaligning (T0547)D398 (1ta8A)R163 because E (beta_S) conformation "forbidden" or filtered. T0547 396 :YV 1ta8A 161 :PM T0547 399 :LQDRSN 1ta8A 164 :LTEPIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=44099 # 1dmuA.396.105 read from T0547.t2k.many.frag # found chain 1dmuA in template set Warning: unaligning (T0547)D398 (1dmuA)E108 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (1dmuA)T113 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1dmuA)G114 because S (epsilon) conformation "forbidden" or filtered. T0547 396 :YV 1dmuA 106 :VR T0547 399 :LQDR 1dmuA 109 :IGLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=44101 1t62A expands to /projects/compbio/data/pdb/1t62.pdb.gz 1t62A:# 1t62A.396.127 read from T0547.t2k.many.frag # adding 1t62A to template set # found chain 1t62A in template set Warning: unaligning (T0547)S403 (1t62A)F1135 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQDR 1t62A 1128 :LAPYQLQ T0547 404 :N 1t62A 1136 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=44103 # 2ffeA.396.259 read from T0547.t2k.many.frag # found chain 2ffeA in template set T0547 396 :YVDLQDRSN 2ffeA 260 :VFDERDRAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=44104 # 1uwfA.396.20 read from T0547.t2k.many.frag # found chain 1uwfA in training set Warning: unaligning (T0547)N404 (1uwfA)N29 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQDRS 1uwfA 21 :YVNLAPVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=44105 1f39A expands to /projects/compbio/data/pdb/1f39.pdb.gz 1f39A:# 1f39A.396.31 read from T0547.t2k.many.frag # adding 1f39A to template set # found chain 1f39A in template set Warning: unaligning (T0547)R402 (1f39A)A173 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQD 1f39A 167 :LVDPEQ T0547 403 :SN 1f39A 174 :VE Number of specific fragments extracted= 2 number of extra gaps= 1 total=44107 # 1cfr.396.170 read from T0547.t2k.many.frag # found chain 1cfr in template set T0547 396 :YVDLQDRSN 1cfr 171 :YKNFIDYAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=44108 1gsa expands to /projects/compbio/data/pdb/1gsa.pdb.gz 1gsa:Warning: there is no chain 1gsa will retry with 1gsaA # 1gsa.396.196 read from T0547.t2k.many.frag # adding 1gsa to template set # found chain 1gsa in template set T0547 396 :YVDLQDRSN 1gsa 197 :AQNYLPAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=44109 # 2asbA.396.218 read from T0547.t2k.many.frag # found chain 2asbA in training set Warning: unaligning (T0547)N404 (2asbA)P331 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQDRS 2asbA 323 :IRGDAPPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=44110 # 1ckmA.396.216 read from T0547.t2k.many.frag # found chain 1ckmA in template set T0547 396 :YVDLQDRSN 1ckmA 217 :IMSVDEPVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=44111 # 1zkdA.396.138 read from T0547.t2k.many.frag # found chain 1zkdA in template set T0547 396 :YVDLQDRSN 1zkdA 139 :WHDSFEDVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=44112 # 1jakA.396.427 read from T0547.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0547)R402 (1jakA)G428 because T (delta_L) conformation "forbidden" or filtered. T0547 396 :YVDLQD 1jakA 422 :PAGYLP T0547 403 :SN 1jakA 429 :AP Number of specific fragments extracted= 2 number of extra gaps= 1 total=44114 # 1jbwA.396.275 read from T0547.t2k.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)Q400 (1jbwA)E280 because L (left) conformation "forbidden" or filtered. T0547 396 :YVDL 1jbwA 276 :AKQT T0547 401 :DRSN 1jbwA 281 :WPLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=44116 2cb5A expands to /projects/compbio/data/pdb/2cb5.pdb.gz 2cb5A:Skipped atom 305, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 307, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 522, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 524, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 590, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 592, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1656, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1659, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1909, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1911, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1913, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1915, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1917, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1919, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 2504, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 2506, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 2508, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 2510, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 2726, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 2728, because occupancy 0.500 <= existing 0.500 in 2cb5A # 2cb5A.396.269 read from T0547.t2k.many.frag # adding 2cb5A to template set # found chain 2cb5A in template set T0547 396 :YVDLQDRSN 2cb5A 271 :VNDPRPQHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=44117 # 1vkyA.396.299 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)V397 (1vkyA)T289 because Y (epsilon') conformation "forbidden" or filtered. T0547 396 :Y 1vkyA 288 :V T0547 398 :DLQDRSN 1vkyA 290 :NFHLPRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=44119 # 1fy7A.396.101 read from T0547.t2k.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)D401 (1fy7A)L264 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQ 1fy7A 259 :LDHKT T0547 402 :RSN 1fy7A 265 :YYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=44121 1wmxA expands to /projects/compbio/data/pdb/1wmx.pdb.gz 1wmxA:# 1wmxA.396.51 read from T0547.t2k.many.frag # adding 1wmxA to template set # found chain 1wmxA in template set Warning: unaligning (T0547)D401 (1wmxA)T57 because Y (epsilon') conformation "forbidden" or filtered. T0547 396 :YVDLQ 1wmxA 52 :RLNVQ T0547 402 :RSN 1wmxA 58 :TVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=44123 # 1sqwA.396.117 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)R402 (1sqwA)N124 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (1sqwA)T125 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQD 1sqwA 118 :LGRITE T0547 404 :N 1sqwA 126 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=44125 # 1i40A.397.72 read from T0547.t2k.many.frag # found chain 1i40A in template set T0547 397 :VDLQDRSNA 1i40A 73 :VPTPYPLQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=44126 # 1jalA.397.344 read from T0547.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)K347 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)K347 Warning: unaligning (T0547)D401 (1jalA)Y349 because P (beta_P) conformation "forbidden" or filtered. T0547 397 :V 1jalA 345 :E T0547 400 :Q 1jalA 348 :D T0547 402 :RSNA 1jalA 350 :IVQD Number of specific fragments extracted= 3 number of extra gaps= 2 total=44129 # 1gmlA.397.123 read from T0547.t2k.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)S403 (1gmlA)L338 because P (beta_P) conformation "forbidden" or filtered. T0547 397 :VDLQDR 1gmlA 332 :VSRPEE T0547 404 :NA 1gmlA 339 :RE Number of specific fragments extracted= 2 number of extra gaps= 1 total=44131 # 1fm0D.397.59 read from T0547.t2k.many.frag # found chain 1fm0D in training set T0547 397 :VDLQDRSNA 1fm0D 60 :VSFDHPLTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=44132 # 1ogoX.397.22 read from T0547.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0547)D401 (1ogoX)T27 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1ogoX)Q30 because P (beta_P) conformation "forbidden" or filtered. T0547 397 :VDLQ 1ogoX 23 :INTQ T0547 402 :RS 1ogoX 28 :PV T0547 405 :A 1ogoX 31 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=44135 # 1kyfA.397.79 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)A405 (1kyfA)G779 because P (beta_P) conformation "forbidden" or filtered. T0547 397 :VDLQDRSN 1kyfA 771 :KPVDPTVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=44136 # 2bpsA.397.39 read from T0547.t2k.many.frag # found chain 2bpsA in template set Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bpsA)P43 Warning: unaligning (T0547)R402 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bpsA)P43 Warning: unaligning (T0547)N404 (2bpsA)R45 because P (beta_P) conformation "forbidden" or filtered. T0547 397 :VDLQ 2bpsA 38 :QSVS T0547 403 :S 2bpsA 44 :P T0547 405 :A 2bpsA 46 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=44139 # 1f39A.397.32 read from T0547.t2k.many.frag # found chain 1f39A in template set T0547 397 :VDLQDRSNA 1f39A 168 :VDPEQAVEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=44140 # 1t62A.397.128 read from T0547.t2k.many.frag # found chain 1t62A in template set T0547 397 :VDLQDRSNA 1t62A 1129 :APYQLQFYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=44141 # 1uwfA.397.21 read from T0547.t2k.many.frag # found chain 1uwfA in training set T0547 397 :VDLQDRSNA 1uwfA 22 :VNLAPVVNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44142 # 1k92A.397.179 read from T0547.t2k.many.frag # found chain 1k92A in training set T0547 397 :VDLQDRSNA 1k92A 180 :FDYKMSVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=44143 # 1vjoA.397.355 read from T0547.t2k.many.frag # found chain 1vjoA in training set Warning: unaligning (T0547)D401 (1vjoA)G348 because S (epsilon) conformation "forbidden" or filtered. T0547 397 :VDLQ 1vjoA 344 :GGGL T0547 402 :RSNA 1vjoA 349 :ELAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=44145 # 1zkdA.397.139 read from T0547.t2k.many.frag # found chain 1zkdA in template set T0547 397 :VDLQDRSNA 1zkdA 140 :HDSFEDVPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=44146 # 1wmxA.397.52 read from T0547.t2k.many.frag # found chain 1wmxA in template set Warning: unaligning (T0547)R402 (1wmxA)T58 because P (beta_P) conformation "forbidden" or filtered. T0547 397 :VDLQD 1wmxA 53 :LNVQT T0547 403 :SNA 1wmxA 59 :VQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=44148 # 1ta8A.397.161 read from T0547.t2k.many.frag # found chain 1ta8A in training set Warning: unaligning (T0547)D401 (1ta8A)E166 because E (beta_S) conformation "forbidden" or filtered. T0547 397 :VDLQ 1ta8A 162 :MRLT T0547 402 :RSNA 1ta8A 167 :PISV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44150 # 1sv6A.397.215 read from T0547.t2k.many.frag # found chain 1sv6A in template set Warning: unaligning (T0547)A405 (1sv6A)T224 because P (beta_P) conformation "forbidden" or filtered. T0547 397 :VDLQDRSN 1sv6A 216 :ASLGEPLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=44151 # 1v71A.397.273 read from T0547.t2k.many.frag # found chain 1v71A in training set Warning: unaligning (T0547)Q400 (1v71A)K277 because L (left) conformation "forbidden" or filtered. T0547 397 :VDL 1v71A 274 :ARM T0547 401 :DRSNA 1v71A 278 :IVVEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=44153 # 1sqwA.397.118 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)D401 (1sqwA)E123 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1sqwA)N124 because L (left) conformation "forbidden" or filtered. T0547 397 :VDLQ 1sqwA 119 :GRIT T0547 403 :SNA 1sqwA 125 :TSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=44155 # 1gsa.397.197 read from T0547.t2k.many.frag # found chain 1gsa in template set Warning: unaligning (T0547)Q400 (1gsa)L201 because D (zeta) conformation "forbidden" or filtered. T0547 397 :VDL 1gsa 198 :QNY T0547 401 :DRSNA 1gsa 202 :PAIKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=44157 # 1cfr.397.171 read from T0547.t2k.many.frag # found chain 1cfr in template set T0547 397 :VDLQDRSNA 1cfr 172 :KNFIDYAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44158 # 1jakA.397.428 read from T0547.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0547)R402 (1jakA)G428 because T (delta_L) conformation "forbidden" or filtered. T0547 397 :VDLQD 1jakA 423 :AGYLP T0547 403 :SNA 1jakA 429 :APA Number of specific fragments extracted= 2 number of extra gaps= 1 total=44160 # 1twfH.397.42 read from T0547.t2k.many.frag # found chain 1twfH in template set Warning: unaligning (T0547)N404 (1twfH)A50 because Y (epsilon') conformation "forbidden" or filtered. T0547 397 :VDLQDRS 1twfH 43 :NVELFPV T0547 405 :A 1twfH 51 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=44162 # 1w61A.397.310 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)R402 (1w61A)Q316 because G (3-10) conformation "forbidden" or filtered. T0547 397 :VDLQD 1w61A 311 :LYAKG T0547 403 :SNA 1w61A 317 :LRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=44164 2aukA expands to /projects/compbio/data/pdb/2auk.pdb.gz 2aukA:# 2aukA.397.65 read from T0547.t2k.many.frag # adding 2aukA to template set # found chain 2aukA in template set Warning: unaligning (T0547)D398 (2aukA)G67 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (2aukA)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (2aukA)E70 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (2aukA)A73 because E (beta_S) conformation "forbidden" or filtered. T0547 397 :V 2aukA 66 :K T0547 399 :L 2aukA 68 :D T0547 402 :RS 2aukA 71 :QV T0547 405 :A 2aukA 74 :G Number of specific fragments extracted= 4 number of extra gaps= 3 total=44168 # 1dmuA.397.106 read from T0547.t2k.many.frag # found chain 1dmuA in template set Warning: unaligning (T0547)S403 (1dmuA)T113 because Y (epsilon') conformation "forbidden" or filtered. T0547 397 :VDLQDR 1dmuA 107 :REIGLP T0547 404 :NA 1dmuA 114 :GP Number of specific fragments extracted= 2 number of extra gaps= 1 total=44170 # 1zkdA.397.241 read from T0547.t2k.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)L399 (1zkdA)G244 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1zkdA)D249 because Y (epsilon') conformation "forbidden" or filtered. T0547 397 :VD 1zkdA 242 :DY T0547 400 :QDRS 1zkdA 245 :HLRS T0547 405 :A 1zkdA 250 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=44173 # 1who.397.53 read from T0547.t2k.many.frag # found chain 1who in template set T0547 397 :VDLQDRSNA 1who 54 :FDSEEPLQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=44174 # 1h7sA.397.122 read from T0547.t2k.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)D398 (1h7sA)T124 because Y (epsilon') conformation "forbidden" or filtered. T0547 397 :V 1h7sA 123 :S T0547 399 :LQDRSNA 1h7sA 125 :CHASAKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44176 # 1iu4A.397.258 read from T0547.t2k.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)D398 (1iu4A)G260 because S (epsilon) conformation "forbidden" or filtered. T0547 397 :V 1iu4A 259 :F T0547 399 :LQDRSNA 1iu4A 261 :AQTEADA Number of specific fragments extracted= 2 number of extra gaps= 1 total=44178 1ia9A expands to /projects/compbio/data/pdb/1ia9.pdb.gz 1ia9A:# 1ia9A.397.82 read from T0547.t2k.many.frag # adding 1ia9A to template set # found chain 1ia9A in template set Warning: unaligning (T0547)D401 (1ia9A)D1635 because L (left) conformation "forbidden" or filtered. T0547 397 :VDLQ 1ia9A 1631 :WSEH T0547 402 :RSNA 1ia9A 1636 :ILKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=44180 # 1i40A.398.73 read from T0547.t2k.many.frag # found chain 1i40A in template set T0547 398 :DLQDRSNAE 1i40A 74 :PTPYPLQPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=44181 # 1jalA.398.345 read from T0547.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)D398 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)K347 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)K347 Warning: unaligning (T0547)S403 (1jalA)V351 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :QDR 1jalA 348 :DYI T0547 404 :NAE 1jalA 352 :QDG Number of specific fragments extracted= 2 number of extra gaps= 2 total=44183 # 1fm0D.398.60 read from T0547.t2k.many.frag # found chain 1fm0D in training set Warning: unaligning (T0547)D401 (1fm0D)H64 because P (beta_P) conformation "forbidden" or filtered. T0547 398 :DLQ 1fm0D 61 :SFD T0547 402 :RSNAE 1fm0D 65 :PLTDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=44185 # 1gmlA.398.124 read from T0547.t2k.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)N404 (1gmlA)R339 because E (beta_S) conformation "forbidden" or filtered. T0547 398 :DLQDRS 1gmlA 333 :SRPEEL T0547 405 :AE 1gmlA 340 :ED Number of specific fragments extracted= 2 number of extra gaps= 1 total=44187 # 2bpsA.398.40 read from T0547.t2k.many.frag # found chain 2bpsA in template set Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bpsA)P43 Warning: unaligning (T0547)R402 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bpsA)P43 Warning: unaligning (T0547)A405 (2bpsA)E46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2bpsA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :DLQ 2bpsA 39 :SVS T0547 403 :SN 2bpsA 44 :PR Number of specific fragments extracted= 2 number of extra gaps= 2 total=44189 # 1ogoX.398.23 read from T0547.t2k.many.frag # found chain 1ogoX in training set T0547 398 :DLQDRSNAE 1ogoX 24 :NTQTPVQPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=44190 # 1f39A.398.33 read from T0547.t2k.many.frag # found chain 1f39A in template set Warning: unaligning (T0547)D398 (1f39A)D169 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1f39A)P176 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1f39A)G177 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQDRSN 1f39A 170 :PEQAVE Number of specific fragments extracted= 1 number of extra gaps= 2 total=44191 # 1sv6A.398.216 read from T0547.t2k.many.frag # found chain 1sv6A in template set Warning: unaligning (T0547)D401 (1sv6A)E220 because D (zeta) conformation "forbidden" or filtered. T0547 398 :DLQ 1sv6A 217 :SLG T0547 402 :RSNAE 1sv6A 221 :PLRTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=44193 # 1kyfA.398.80 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)E406 (1kyfA)G780 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :DLQDRSNA 1kyfA 772 :PVDPTVDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=44194 # 2az4A.398.333 read from T0547.t2k.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)D398 (2az4A)N334 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L399 (2az4A)Q335 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2az4A)G342 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QDRSNA 2az4A 336 :FDNLQE Number of specific fragments extracted= 1 number of extra gaps= 2 total=44195 # 1uwfA.398.22 read from T0547.t2k.many.frag # found chain 1uwfA in training set Warning: unaligning (T0547)N404 (1uwfA)N29 because P (beta_P) conformation "forbidden" or filtered. T0547 398 :DLQDRS 1uwfA 23 :NLAPVV T0547 405 :AE 1uwfA 30 :VG Number of specific fragments extracted= 2 number of extra gaps= 1 total=44197 # 1sqwA.398.119 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)R402 (1sqwA)N124 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1sqwA)Y128 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :DLQD 1sqwA 120 :RITE T0547 403 :SNA 1sqwA 125 :TSQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=44199 # 1ia9A.398.83 read from T0547.t2k.many.frag # found chain 1ia9A in template set Warning: unaligning (T0547)Q400 (1ia9A)H1634 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1ia9A)G1640 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :DL 1ia9A 1632 :SE T0547 401 :DRSNA 1ia9A 1635 :DILKS Number of specific fragments extracted= 2 number of extra gaps= 2 total=44201 # 1wmxA.398.53 read from T0547.t2k.many.frag # found chain 1wmxA in template set Warning: unaligning (T0547)D398 (1wmxA)N54 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wmxA)W63 T0547 399 :LQDRSNA 1wmxA 55 :VQTTVQS Number of specific fragments extracted= 1 number of extra gaps= 2 total=44202 # 1zkdA.398.140 read from T0547.t2k.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)E406 (1zkdA)G149 because S (epsilon) conformation "forbidden" or filtered. T0547 398 :DLQDRSNA 1zkdA 141 :DSFEDVPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=44203 # 1qxyA.398.78 read from T0547.t2k.many.frag # found chain 1qxyA in training set Warning: unaligning (T0547)D398 (1qxyA)P79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1qxyA)R82 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQ 1qxyA 80 :SK T0547 402 :RSNAE 1qxyA 83 :VIREG Number of specific fragments extracted= 2 number of extra gaps= 2 total=44205 # 1t62A.398.129 read from T0547.t2k.many.frag # found chain 1t62A in template set Warning: unaligning (T0547)L399 (1t62A)Y1131 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1t62A)L1133 because N (gamma') conformation "forbidden" or filtered. T0547 398 :D 1t62A 1130 :P T0547 400 :Q 1t62A 1132 :Q T0547 402 :RSNAE 1t62A 1134 :QFYPD Number of specific fragments extracted= 3 number of extra gaps= 2 total=44208 1vctA expands to /projects/compbio/data/pdb/1vct.pdb.gz 1vctA:Skipped atom 136, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 138, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 555, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 557, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 858, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 860, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 862, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 864, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 866, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 868, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 870, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 872, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 874, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 876, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 878, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 880, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 882, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 884, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 886, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 892, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 894, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 896, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 898, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 900, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1027, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1038, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1040, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1042, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1044, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1046, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1048, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1050, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1052, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1054, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1056, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1058, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1060, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1062, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1064, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1066, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1068, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1070, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1072, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1074, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1076, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1078, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1080, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1082, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1084, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1086, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1088, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1090, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1092, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1094, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1096, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1098, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1100, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1102, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1104, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1106, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1108, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1110, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1112, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1114, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1116, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1118, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1120, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1122, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1124, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1126, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1128, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1130, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1132, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1134, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1136, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1138, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1140, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1142, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1144, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1146, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1148, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1150, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1152, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1154, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1156, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1158, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1160, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1162, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1164, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1166, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1168, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1170, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1172, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1174, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1176, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1178, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1180, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1182, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1184, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1186, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1188, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1190, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1192, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1194, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1196, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1198, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1200, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1202, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1204, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1206, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1208, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1210, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1212, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1346, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1348, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1350, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1352, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1354, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1356, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1358, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1360, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1362, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1364, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1366, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1368, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1370, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1372, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1374, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1376, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1378, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1380, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1382, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1384, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1386, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1388, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1390, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1392, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1394, because occupancy 0.500 <= existing 0.500 in 1vctA # 1vctA.398.165 read from T0547.t2k.many.frag # adding 1vctA to template set # found chain 1vctA in template set Warning: unaligning (T0547)D401 (1vctA)F169 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1vctA)G174 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :DLQ 1vctA 166 :NEN T0547 402 :RSNA 1vctA 170 :KIRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=44210 # 1cfr.398.172 read from T0547.t2k.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)D401 (1cfr)D176 because L (left) conformation "forbidden" or filtered. T0547 398 :DLQ 1cfr 173 :NFI T0547 402 :RSNAE 1cfr 177 :YAELE Number of specific fragments extracted= 2 number of extra gaps= 1 total=44212 2bolA expands to /projects/compbio/data/pdb/2bol.pdb.gz 2bolA:# 2bolA.398.239 read from T0547.t2k.many.frag # adding 2bolA to template set # found chain 2bolA in template set Warning: unaligning (T0547)Q400 (2bolA)D242 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (2bolA)F245 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (2bolA)A246 because P (beta_P) conformation "forbidden" or filtered. T0547 398 :DL 2bolA 240 :KV T0547 401 :DR 2bolA 243 :PH T0547 405 :AE 2bolA 247 :PK Number of specific fragments extracted= 3 number of extra gaps= 2 total=44215 # 1jakA.398.429 read from T0547.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0547)R402 (1jakA)G428 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1jakA)P430 because P (beta_P) conformation "forbidden" or filtered. T0547 398 :DLQD 1jakA 424 :GYLP T0547 403 :S 1jakA 429 :A T0547 405 :AE 1jakA 431 :AD Number of specific fragments extracted= 3 number of extra gaps= 2 total=44218 # 1oi2A.398.276 read from T0547.t2k.many.frag # found chain 1oi2A in training set Warning: unaligning (T0547)D398 (1oi2A)Q279 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1oi2A)Q282 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQ 1oi2A 280 :TK T0547 402 :RSNAE 1oi2A 283 :PLQSG Number of specific fragments extracted= 2 number of extra gaps= 2 total=44220 # 2aukA.398.66 read from T0547.t2k.many.frag # found chain 2aukA in template set Warning: unaligning (T0547)Q400 (2aukA)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (2aukA)E70 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (2aukA)V72 because Y (epsilon') conformation "forbidden" or filtered. T0547 398 :DL 2aukA 67 :GD T0547 402 :R 2aukA 71 :Q T0547 404 :NAE 2aukA 73 :AGG Number of specific fragments extracted= 3 number of extra gaps= 2 total=44223 # 1w61A.398.311 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)E406 (1w61A)G320 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :DLQDRSNA 1w61A 312 :YAKGQLRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=44224 1r17A expands to /projects/compbio/data/pdb/1r17.pdb.gz 1r17A:# 1r17A.398.60 read from T0547.t2k.many.frag # adding 1r17A to template set # found chain 1r17A in template set Warning: unaligning (T0547)E406 (1r17A)G324 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :DLQDRSNA 1r17A 316 :EVDDKVKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=44225 # 1twfH.398.43 read from T0547.t2k.many.frag # found chain 1twfH in template set Warning: unaligning (T0547)N404 (1twfH)A50 because Y (epsilon') conformation "forbidden" or filtered. T0547 398 :DLQDRS 1twfH 44 :VELFPV T0547 405 :AE 1twfH 51 :AQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=44227 # 1k92A.398.180 read from T0547.t2k.many.frag # found chain 1k92A in training set T0547 398 :DLQDRSNAE 1k92A 181 :DYKMSVEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44228 # 1oygA.398.337 read from T0547.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)N404 (1oygA)T370 because E (beta_S) conformation "forbidden" or filtered. T0547 398 :DLQDRS 1oygA 364 :MTIDGI T0547 405 :AE 1oygA 371 :SN Number of specific fragments extracted= 2 number of extra gaps= 1 total=44230 # 1iu4A.398.259 read from T0547.t2k.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)D398 (1iu4A)G260 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1iu4A)Q262 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :L 1iu4A 261 :A T0547 401 :DRSNAE 1iu4A 263 :TEADAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=44232 # 2ex0A.398.331 read from T0547.t2k.many.frag # found chain 2ex0A in training set T0547 398 :DLQDRSNAE 2ex0A 356 :SLYFSLPKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=44233 # 1i40A.399.74 read from T0547.t2k.many.frag # found chain 1i40A in template set Warning: unaligning (T0547)N404 (1i40A)Q80 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1i40A)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQDRS 1i40A 75 :TPYPL T0547 405 :A 1i40A 81 :P T0547 407 :I 1i40A 83 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=44236 # 1jalA.399.346 read from T0547.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)K347 Warning: unaligning (T0547)D401 (1jalA)Y349 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :Q 1jalA 348 :D T0547 402 :RSNAEI 1jalA 350 :IVQDGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=44238 # 1fm0D.399.61 read from T0547.t2k.many.frag # found chain 1fm0D in training set Warning: unaligning (T0547)R402 (1fm0D)P65 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQD 1fm0D 62 :FDH T0547 403 :SNAEI 1fm0D 66 :LTDGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=44240 # 1f39A.399.34 read from T0547.t2k.many.frag # found chain 1f39A in template set Warning: unaligning (T0547)A405 (1f39A)P176 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQDRSN 1f39A 170 :PEQAVE T0547 406 :EI 1f39A 177 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=44242 # 2bpsA.399.41 read from T0547.t2k.many.frag # found chain 2bpsA in template set Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bpsA)P43 Warning: unaligning (T0547)R402 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bpsA)P43 Warning: unaligning (T0547)E406 (2bpsA)G47 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I407 (2bpsA)H48 because L (left) conformation "forbidden" or filtered. T0547 399 :LQ 2bpsA 40 :VS T0547 403 :SNA 2bpsA 44 :PRE Number of specific fragments extracted= 2 number of extra gaps= 2 total=44244 # 1sv6A.399.217 read from T0547.t2k.many.frag # found chain 1sv6A in template set Warning: unaligning (T0547)Q400 (1sv6A)G219 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1sv6A)G225 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :L 1sv6A 218 :L T0547 401 :DRSNA 1sv6A 220 :EPLRT T0547 407 :I 1sv6A 226 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=44247 # 1gmlA.399.125 read from T0547.t2k.many.frag # found chain 1gmlA in template set T0547 399 :LQDRSNAEI 1gmlA 334 :RPEELREDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=44248 # 1ogoX.399.24 read from T0547.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0547)D401 (1ogoX)T27 because Y (epsilon') conformation "forbidden" or filtered. T0547 399 :LQ 1ogoX 25 :TQ T0547 402 :RSNAEI 1ogoX 28 :PVQPGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=44250 # 1ia9A.399.84 read from T0547.t2k.many.frag # found chain 1ia9A in template set Warning: unaligning (T0547)Q400 (1ia9A)H1634 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1ia9A)D1635 because L (left) conformation "forbidden" or filtered. T0547 399 :L 1ia9A 1633 :E T0547 402 :RSNAEI 1ia9A 1636 :ILKSGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=44252 # 1uwfA.399.23 read from T0547.t2k.many.frag # found chain 1uwfA in training set T0547 399 :LQDRSNAEI 1uwfA 24 :LAPVVNVGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=44253 # 1oi2A.399.277 read from T0547.t2k.many.frag # found chain 1oi2A in training set Warning: unaligning (T0547)E406 (1oi2A)G287 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQDRSNA 1oi2A 280 :TKQPLQS T0547 407 :I 1oi2A 288 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=44255 # 1vctA.399.166 read from T0547.t2k.many.frag # found chain 1vctA in template set T0547 399 :LQDRSNAEI 1vctA 167 :ENFKIRAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=44256 # 1qxyA.399.79 read from T0547.t2k.many.frag # found chain 1qxyA in training set Warning: unaligning (T0547)A405 (1qxyA)E86 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQDRSN 1qxyA 80 :SKRVIR T0547 406 :EI 1qxyA 87 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=44258 # 2az4A.399.334 read from T0547.t2k.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)E406 (2az4A)G342 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQDRSNA 2az4A 335 :QFDNLQE T0547 407 :I 2az4A 343 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=44260 # 1sqwA.399.120 read from T0547.t2k.many.frag # found chain 1sqwA in template set T0547 399 :LQDRSNAEI 1sqwA 121 :ITENTSQYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=44261 # 2bolA.399.240 read from T0547.t2k.many.frag # found chain 2bolA in template set Warning: unaligning (T0547)S403 (2bolA)F245 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQDR 2bolA 241 :VDPH T0547 404 :NAEI 2bolA 246 :APKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=44263 # 1r17A.399.61 read from T0547.t2k.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)E406 (1r17A)G324 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQDRSNA 1r17A 317 :VDDKVKS T0547 407 :I 1r17A 325 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=44265 # 1kyfA.399.81 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)N404 (1kyfA)D778 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1kyfA)G780 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQDRS 1kyfA 773 :VDPTV T0547 405 :A 1kyfA 779 :G T0547 407 :I 1kyfA 781 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=44268 # 1t62A.399.130 read from T0547.t2k.many.frag # found chain 1t62A in template set Warning: unaligning (T0547)L399 (1t62A)Y1131 because Y (epsilon') conformation "forbidden" or filtered. T0547 400 :QDRSNAEI 1t62A 1132 :QLQFYPDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=44269 # 1rutX.399.102 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)Q400 (1rutX)R119 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :L 1rutX 118 :C T0547 401 :DRSNAEI 1rutX 120 :NRLVPGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=44271 # 1jakA.399.430 read from T0547.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0547)Q400 (1jakA)L426 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1jakA)G428 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1jakA)P430 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :L 1jakA 425 :Y T0547 401 :D 1jakA 427 :P T0547 403 :S 1jakA 429 :A T0547 405 :AEI 1jakA 431 :ADA Number of specific fragments extracted= 4 number of extra gaps= 3 total=44275 # 1oygA.399.338 read from T0547.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)R402 (1oygA)G368 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQD 1oygA 365 :TID T0547 403 :SNAEI 1oygA 369 :ITSND Number of specific fragments extracted= 2 number of extra gaps= 1 total=44277 # 2ex0A.399.332 read from T0547.t2k.many.frag # found chain 2ex0A in training set T0547 399 :LQDRSNAEI 2ex0A 357 :LYFSLPKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=44278 # 1vpmA.399.75 read from T0547.t2k.many.frag # found chain 1vpmA in training set Warning: unaligning (T0547)D401 (1vpmA)S66 because Y (epsilon') conformation "forbidden" or filtered. T0547 399 :LQ 1vpmA 64 :FK T0547 402 :RSNAEI 1vpmA 67 :SATVGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=44280 # 1wmxA.399.54 read from T0547.t2k.many.frag # found chain 1wmxA in template set Warning: unaligning (T0547)D401 (1wmxA)T57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1wmxA)Q60 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wmxA)W63 Warning: unaligning (T0547)I407 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W63 T0547 399 :LQ 1wmxA 55 :VQ T0547 402 :RS 1wmxA 58 :TV T0547 405 :A 1wmxA 61 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=44283 # 1f60A.399.265 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)D401 (1f60A)G268 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1f60A)P272 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQ 1f60A 266 :ET T0547 402 :RSN 1f60A 269 :VIK T0547 406 :EI 1f60A 273 :GM Number of specific fragments extracted= 3 number of extra gaps= 2 total=44286 # 1zkdA.399.141 read from T0547.t2k.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)N404 (1zkdA)P147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1zkdA)G149 because S (epsilon) conformation "forbidden" or filtered. T0547 399 :LQDRS 1zkdA 142 :SFEDV T0547 405 :A 1zkdA 148 :E T0547 407 :I 1zkdA 150 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=44289 1wmmA expands to /projects/compbio/data/pdb/1wmm.pdb.gz 1wmmA:# 1wmmA.399.30 read from T0547.t2k.many.frag # adding 1wmmA to template set # found chain 1wmmA in template set Warning: unaligning (T0547)E406 (1wmmA)G38 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQDRSNA 1wmmA 31 :TLSRVKP T0547 407 :I 1wmmA 39 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=44291 # 1te0A.399.108 read from T0547.t2k.many.frag # found chain 1te0A in template set T0547 399 :LQDRSNAEI 1te0A 145 :ARRVPHIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=44292 # 1t62A.399.61 read from T0547.t2k.many.frag # found chain 1t62A in template set Warning: unaligning (T0547)Q400 (1t62A)E1063 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (1t62A)P1066 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1t62A)A1068 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :L 1t62A 1062 :E T0547 401 :DR 1t62A 1064 :QL T0547 404 :N 1t62A 1067 :K T0547 406 :EI 1t62A 1069 :GQ Number of specific fragments extracted= 4 number of extra gaps= 3 total=44296 # 1i40A.400.75 read from T0547.t2k.many.frag # found chain 1i40A in template set Warning: unaligning (T0547)E406 (1i40A)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QDRSNA 1i40A 76 :PYPLQP T0547 407 :IL 1i40A 83 :SV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44298 # 1fm0D.400.62 read from T0547.t2k.many.frag # found chain 1fm0D in training set T0547 400 :QDRSNAEIL 1fm0D 63 :DHPLTDGDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=44299 # 1jalA.400.347 read from T0547.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)R402 (1jalA)I350 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1jalA)G354 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QD 1jalA 348 :DY T0547 403 :SNA 1jalA 351 :VQD T0547 407 :IL 1jalA 355 :DV Number of specific fragments extracted= 3 number of extra gaps= 2 total=44302 # 1sv6A.400.218 read from T0547.t2k.many.frag # found chain 1sv6A in template set Warning: unaligning (T0547)Q400 (1sv6A)G219 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1sv6A)T224 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1sv6A)G225 because T (delta_L) conformation "forbidden" or filtered. T0547 401 :DRSN 1sv6A 220 :EPLR T0547 407 :IL 1sv6A 226 :DI Number of specific fragments extracted= 2 number of extra gaps= 2 total=44304 # 1qxyA.400.80 read from T0547.t2k.many.frag # found chain 1qxyA in training set Warning: unaligning (T0547)E406 (1qxyA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QDRSNA 1qxyA 81 :KRVIRE T0547 407 :IL 1qxyA 88 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44306 # 1f39A.400.35 read from T0547.t2k.many.frag # found chain 1f39A in template set T0547 400 :QDRSNAEIL 1f39A 171 :EQAVEPGDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=44307 # 1oi2A.400.278 read from T0547.t2k.many.frag # found chain 1oi2A in training set Warning: unaligning (T0547)A405 (1oi2A)S286 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :QDRSN 1oi2A 281 :KQPLQ T0547 406 :EIL 1oi2A 287 :GDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=44309 # 1vctA.400.167 read from T0547.t2k.many.frag # found chain 1vctA in template set T0547 400 :QDRSNAEIL 1vctA 168 :NFKIRAGDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44310 # 2bpsA.400.42 read from T0547.t2k.many.frag # found chain 2bpsA in template set Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bpsA)P43 Warning: unaligning (T0547)R402 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bpsA)P43 Warning: unaligning (T0547)S403 (2bpsA)P44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (2bpsA)R45 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :Q 2bpsA 41 :S T0547 405 :AEIL 2bpsA 46 :EGHW Number of specific fragments extracted= 2 number of extra gaps= 1 total=44312 # 1ia9A.400.85 read from T0547.t2k.many.frag # found chain 1ia9A in template set Warning: unaligning (T0547)Q400 (1ia9A)H1634 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1ia9A)K1638 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :DRS 1ia9A 1635 :DIL T0547 405 :AEIL 1ia9A 1639 :SGHL Number of specific fragments extracted= 2 number of extra gaps= 2 total=44314 # 1r17A.400.62 read from T0547.t2k.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)Q400 (1r17A)D318 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1r17A)S323 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :DRSN 1r17A 319 :DKVK T0547 406 :EIL 1r17A 324 :GDT Number of specific fragments extracted= 2 number of extra gaps= 2 total=44316 # 2az4A.400.335 read from T0547.t2k.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)E406 (2az4A)G342 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QDRSNA 2az4A 336 :FDNLQE T0547 407 :IL 2az4A 343 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44318 # 1wmmA.400.31 read from T0547.t2k.many.frag # found chain 1wmmA in template set Warning: unaligning (T0547)R402 (1wmmA)R34 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1wmmA)P37 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1wmmA)G38 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QD 1wmmA 32 :LS T0547 403 :SN 1wmmA 35 :VK T0547 407 :IL 1wmmA 39 :DK Number of specific fragments extracted= 3 number of extra gaps= 2 total=44321 # 7odcA.400.371 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Q400 (7odcA)L372 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (7odcA)G378 because T (delta_L) conformation "forbidden" or filtered. T0547 401 :DRSNA 7odcA 373 :PEMHV T0547 407 :IL 7odcA 379 :DW Number of specific fragments extracted= 2 number of extra gaps= 2 total=44323 # 1rutX.400.103 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)N404 (1rutX)V123 because E (beta_S) conformation "forbidden" or filtered. T0547 400 :QDRS 1rutX 119 :RNRL T0547 405 :AEIL 1rutX 124 :PGDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=44325 # 1vpmA.400.76 read from T0547.t2k.many.frag # found chain 1vpmA in training set Warning: unaligning (T0547)D401 (1vpmA)S66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1vpmA)G71 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :Q 1vpmA 65 :K T0547 402 :RSNA 1vpmA 67 :SATV T0547 407 :IL 1vpmA 72 :DA Number of specific fragments extracted= 3 number of extra gaps= 2 total=44328 # 1sqwA.400.121 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)R402 (1sqwA)N124 because L (left) conformation "forbidden" or filtered. T0547 400 :QD 1sqwA 122 :TE T0547 403 :SNAEIL 1sqwA 125 :TSQYQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=44330 1chmA expands to /projects/compbio/data/pdb/1chm.pdb.gz 1chmA:# 1chmA.400.235 read from T0547.t2k.many.frag # adding 1chmA to template set # found chain 1chmA in template set Warning: unaligning (T0547)S403 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)N241 Warning: unaligning (T0547)N404 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)N241 Warning: unaligning (T0547)A405 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)G243 Warning: unaligning (T0547)E406 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)G243 T0547 400 :QDR 1chmA 237 :TRK T0547 407 :IL 1chmA 244 :DI Number of specific fragments extracted= 2 number of extra gaps= 1 total=44332 # 1f60A.400.266 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)N404 (1f60A)K271 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1f60A)G273 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QDRS 1f60A 267 :TGVI T0547 405 :A 1f60A 272 :P T0547 407 :IL 1f60A 274 :MV Number of specific fragments extracted= 3 number of extra gaps= 2 total=44335 # 1ogoX.400.25 read from T0547.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0547)Q400 (1ogoX)Q26 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1ogoX)T27 because Y (epsilon') conformation "forbidden" or filtered. T0547 402 :RSNAEIL 1ogoX 28 :PVQPGNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=44336 # 1gmlA.400.126 read from T0547.t2k.many.frag # found chain 1gmlA in template set T0547 400 :QDRSNAEIL 1gmlA 335 :PEELREDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44337 2d1pC expands to /projects/compbio/data/pdb/2d1p.pdb.gz 2d1pC:# 2d1pC.400.17 read from T0547.t2k.many.frag # adding 2d1pC to template set # found chain 2d1pC in template set Warning: unaligning (T0547)E406 (2d1pC)G24 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QDRSNA 2d1pC 18 :LRLLSE T0547 407 :IL 2d1pC 25 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=44339 # 2bolA.400.241 read from T0547.t2k.many.frag # found chain 2bolA in template set T0547 400 :QDRSNAEIL 2bolA 242 :DPHFAPKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44340 # 1uwfA.400.24 read from T0547.t2k.many.frag # found chain 1uwfA in training set T0547 400 :QDRSNAEIL 1uwfA 25 :APVVNVGQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=44341 # 1gttA.400.179 read from T0547.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0547)A405 (1gttA)P185 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :QDRSN 1gttA 180 :RVEIQ T0547 406 :EIL 1gttA 186 :GDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=44343 1zx8A expands to /projects/compbio/data/pdb/1zx8.pdb.gz 1zx8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 260, because occupancy 0.350 <= existing 0.650 in 1zx8A Skipped atom 262, because occupancy 0.350 <= existing 0.650 in 1zx8A Skipped atom 264, because occupancy 0.350 <= existing 0.650 in 1zx8A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zx8A.400.69 read from T0547.t2k.many.frag # adding 1zx8A to template set # found chain 1zx8A in template set Warning: unaligning (T0547)E406 (1zx8A)G64 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QDRSNA 1zx8A 58 :REVVEI T0547 407 :IL 1zx8A 65 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44345 # 2ex0A.400.333 read from T0547.t2k.many.frag # found chain 2ex0A in training set T0547 400 :QDRSNAEIL 2ex0A 358 :YFSLPKEKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=44346 # 1te0A.400.109 read from T0547.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)E406 (1te0A)G152 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QDRSNA 1te0A 146 :RRVPHI T0547 407 :IL 1te0A 153 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44348 # 1y0zA.400.294 read from T0547.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)N404 (1y0zA)Q299 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1y0zA)G301 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QDRS 1y0zA 295 :AVPW T0547 405 :A 1y0zA 300 :R T0547 407 :IL 1y0zA 302 :DV Number of specific fragments extracted= 3 number of extra gaps= 2 total=44351 # 1t62A.400.131 read from T0547.t2k.many.frag # found chain 1t62A in template set T0547 400 :QDRSNAEIL 1t62A 1132 :QLQFYPDML Number of specific fragments extracted= 1 number of extra gaps= 0 total=44352 # 1i40A.401.76 read from T0547.t2k.many.frag # found chain 1i40A in template set Warning: unaligning (T0547)D401 (1i40A)Y77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1i40A)P78 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1i40A)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SNA 1i40A 79 :LQP T0547 407 :ILT 1i40A 83 :SVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=44354 # 1fm0D.401.63 read from T0547.t2k.many.frag # found chain 1fm0D in training set T0547 401 :DRSNAEILT 1fm0D 64 :HPLTDGDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44355 # 1sv6A.401.219 read from T0547.t2k.many.frag # found chain 1sv6A in template set Warning: unaligning (T0547)N404 (1sv6A)R223 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :DRS 1sv6A 220 :EPL T0547 405 :AEILT 1sv6A 224 :TGDII Number of specific fragments extracted= 2 number of extra gaps= 1 total=44357 # 1qxyA.401.81 read from T0547.t2k.many.frag # found chain 1qxyA in training set Warning: unaligning (T0547)A405 (1qxyA)E86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1qxyA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 401 :DRSN 1qxyA 82 :RVIR T0547 407 :ILT 1qxyA 88 :DLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44359 # 1f39A.401.36 read from T0547.t2k.many.frag # found chain 1f39A in template set T0547 401 :DRSNAEILT 1f39A 172 :QAVEPGDFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=44360 # 1vctA.401.168 read from T0547.t2k.many.frag # found chain 1vctA in template set Warning: unaligning (T0547)N404 (1vctA)R172 because E (beta_S) conformation "forbidden" or filtered. T0547 401 :DRS 1vctA 169 :FKI T0547 405 :AEILT 1vctA 173 :AGDVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44362 # 1oi2A.401.279 read from T0547.t2k.many.frag # found chain 1oi2A in training set Warning: unaligning (T0547)S403 (1oi2A)L284 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :DR 1oi2A 282 :QP T0547 404 :NAEILT 1oi2A 285 :QSGDRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44364 # 7odcA.401.372 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E406 (7odcA)G378 because T (delta_L) conformation "forbidden" or filtered. T0547 401 :DRSNA 7odcA 373 :PEMHV T0547 407 :ILT 7odcA 379 :DWM Number of specific fragments extracted= 2 number of extra gaps= 1 total=44366 # 1zx8A.401.70 read from T0547.t2k.many.frag # found chain 1zx8A in template set T0547 401 :DRSNAEILT 1zx8A 59 :EVVEIGDVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=44367 # 1r17A.401.63 read from T0547.t2k.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)N404 (1r17A)K322 because E (beta_S) conformation "forbidden" or filtered. T0547 401 :DRS 1r17A 319 :DKV T0547 405 :AEILT 1r17A 323 :SGDTM Number of specific fragments extracted= 2 number of extra gaps= 1 total=44369 # 1wmmA.401.32 read from T0547.t2k.many.frag # found chain 1wmmA in template set Warning: unaligning (T0547)R402 (1wmmA)R34 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1wmmA)G38 because T (delta_L) conformation "forbidden" or filtered. T0547 401 :D 1wmmA 33 :S T0547 403 :SNA 1wmmA 35 :VKP T0547 407 :ILT 1wmmA 39 :DKL Number of specific fragments extracted= 3 number of extra gaps= 2 total=44372 # 1jalA.401.348 read from T0547.t2k.many.frag # found chain 1jalA in template set T0547 401 :DRSNAEILT 1jalA 349 :YIVQDGDVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=44373 # 1ia9A.401.86 read from T0547.t2k.many.frag # found chain 1ia9A in template set Warning: unaligning (T0547)D401 (1ia9A)D1635 because L (left) conformation "forbidden" or filtered. T0547 402 :RSNAEILT 1ia9A 1636 :ILKSGHLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=44374 # 2d1pC.401.18 read from T0547.t2k.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)E406 (2d1pC)G24 because T (delta_L) conformation "forbidden" or filtered. T0547 401 :DRSNA 2d1pC 19 :RLLSE T0547 407 :ILT 2d1pC 25 :DEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44376 # 2bpsA.401.43 read from T0547.t2k.many.frag # found chain 2bpsA in template set Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bpsA)P43 Warning: unaligning (T0547)R402 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bpsA)P43 Warning: unaligning (T0547)A405 (2bpsA)E46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2bpsA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SN 2bpsA 44 :PR T0547 407 :ILT 2bpsA 48 :HWI Number of specific fragments extracted= 2 number of extra gaps= 2 total=44378 # 2az4A.401.336 read from T0547.t2k.many.frag # found chain 2az4A in template set T0547 401 :DRSNAEILT 2az4A 337 :DNLQEGSLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=44379 # 1chmA.401.236 read from T0547.t2k.many.frag # found chain 1chmA in template set Warning: unaligning (T0547)S403 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)N241 Warning: unaligning (T0547)N404 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)N241 Warning: unaligning (T0547)A405 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)G243 Warning: unaligning (T0547)E406 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)G243 T0547 401 :DR 1chmA 238 :RK T0547 407 :ILT 1chmA 244 :DIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44381 # 1gttA.401.180 read from T0547.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0547)E406 (1gttA)G186 because T (delta_L) conformation "forbidden" or filtered. T0547 401 :DRSNA 1gttA 181 :VEIQP T0547 407 :ILT 1gttA 187 :DRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44383 # 1f60A.401.267 read from T0547.t2k.many.frag # found chain 1f60A in training set T0547 401 :DRSNAEILT 1f60A 268 :GVIKPGMVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44384 # 1rutX.401.104 read from T0547.t2k.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)A405 (1rutX)P124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1rutX)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 401 :DRSN 1rutX 120 :NRLV T0547 407 :ILT 1rutX 126 :DRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=44386 # 1khcA.401.9 read from T0547.t2k.many.frag # found chain 1khcA in training set Warning: unaligning (T0547)N404 (1khcA)G231 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1khcA)I232 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :DRS 1khcA 228 :KEF T0547 406 :EILT 1khcA 233 :GDLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44388 # 1vpmA.401.77 read from T0547.t2k.many.frag # found chain 1vpmA in training set Warning: unaligning (T0547)N404 (1vpmA)T69 because E (beta_S) conformation "forbidden" or filtered. T0547 401 :DRS 1vpmA 66 :SSA T0547 405 :AEILT 1vpmA 70 :VGDAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44390 # 2evrA.401.169 read from T0547.t2k.many.frag # found chain 2evrA in template set T0547 401 :DRSNAEILT 2evrA 158 :AELVAGDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44391 # 1vqvA.401.142 read from T0547.t2k.many.frag # found chain 1vqvA in template set T0547 401 :DRSNAEILT 1vqvA 143 :DGARLGDSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44392 # 1knwA.401.361 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A405 (1knwA)A366 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :DRSN 1knwA 362 :PEVK T0547 406 :EILT 1knwA 367 :GDYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44394 1b12A expands to /projects/compbio/data/pdb/1b12.pdb.gz 1b12A:# 1b12A.401.47 read from T0547.t2k.many.frag # adding 1b12A to template set # found chain 1b12A in template set Warning: unaligning (T0547)D401 (1b12A)G123 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1b12A)G128 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSNA 1b12A 124 :HPKR T0547 407 :ILT 1b12A 129 :DIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=44396 # 1xjvA.401.225 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)E406 (1xjvA)G236 because T (delta_L) conformation "forbidden" or filtered. T0547 401 :DRSNA 1xjvA 231 :RSLKV T0547 407 :ILT 1xjvA 237 :SFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44398 # 1oygA.401.340 read from T0547.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)T409 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)M376 T0547 401 :DRSNAEIL 1oygA 367 :DGITSNDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=44399 # 1y0zA.401.295 read from T0547.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)E406 (1y0zA)G301 because T (delta_L) conformation "forbidden" or filtered. T0547 401 :DRSNA 1y0zA 296 :VPWQR T0547 407 :ILT 1y0zA 302 :DVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44401 # 1kcqA.401.23 read from T0547.t2k.many.frag # found chain 1kcqA in training set T0547 401 :DRSNAEILT 1kcqA 181 :ESFNNGDCF Number of specific fragments extracted= 1 number of extra gaps= 0 total=44402 # 1qxyA.402.82 read from T0547.t2k.many.frag # found chain 1qxyA in training set T0547 402 :RSNAEILTH 1qxyA 83 :VIREGDLVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=44403 # 1i40A.402.77 read from T0547.t2k.many.frag # found chain 1i40A in template set Warning: unaligning (T0547)E406 (1i40A)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSNA 1i40A 78 :PLQP T0547 407 :ILTH 1i40A 83 :SVTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=44405 # 1sv6A.402.220 read from T0547.t2k.many.frag # found chain 1sv6A in template set Warning: unaligning (T0547)E406 (1sv6A)G225 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSNA 1sv6A 221 :PLRT T0547 407 :ILTH 1sv6A 226 :DIIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44407 # 1vctA.402.169 read from T0547.t2k.many.frag # found chain 1vctA in template set Warning: unaligning (T0547)E406 (1vctA)G174 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSNA 1vctA 170 :KIRA T0547 407 :ILTH 1vctA 175 :DVLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=44409 # 1zx8A.402.71 read from T0547.t2k.many.frag # found chain 1zx8A in template set T0547 402 :RSNAEILTH 1zx8A 60 :VVEIGDVGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=44410 # 1r17A.402.64 read from T0547.t2k.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)A405 (1r17A)S323 because P (beta_P) conformation "forbidden" or filtered. T0547 402 :RSN 1r17A 320 :KVK T0547 406 :EILTH 1r17A 324 :GDTMT Number of specific fragments extracted= 2 number of extra gaps= 1 total=44412 # 1fm0D.402.64 read from T0547.t2k.many.frag # found chain 1fm0D in training set Warning: unaligning (T0547)N404 (1fm0D)T67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1fm0D)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RS 1fm0D 65 :PL T0547 405 :A 1fm0D 68 :D T0547 407 :ILTH 1fm0D 70 :DEVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=44415 # 7odcA.402.373 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E406 (7odcA)G378 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSNA 7odcA 374 :EMHV T0547 407 :ILTH 7odcA 379 :DWML Number of specific fragments extracted= 2 number of extra gaps= 1 total=44417 # 2d1pC.402.19 read from T0547.t2k.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)N404 (2d1pC)S22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2d1pC)G24 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RS 2d1pC 20 :LL T0547 405 :A 2d1pC 23 :E T0547 407 :ILTH 2d1pC 25 :DELL Number of specific fragments extracted= 3 number of extra gaps= 2 total=44420 # 1knwA.402.362 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 402 :RSNAEILTH 1knwA 363 :EVKAGDYLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44421 # 1wmmA.402.33 read from T0547.t2k.many.frag # found chain 1wmmA in template set Warning: unaligning (T0547)R402 (1wmmA)R34 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1wmmA)G38 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SNA 1wmmA 35 :VKP T0547 407 :ILTH 1wmmA 39 :DKLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=44423 # 1chmA.402.237 read from T0547.t2k.many.frag # found chain 1chmA in template set Warning: unaligning (T0547)S403 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)N241 Warning: unaligning (T0547)N404 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)N241 Warning: unaligning (T0547)A405 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)G243 Warning: unaligning (T0547)E406 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)G243 T0547 402 :R 1chmA 239 :K T0547 407 :ILTH 1chmA 244 :DILS Number of specific fragments extracted= 2 number of extra gaps= 1 total=44425 # 1b12A.402.48 read from T0547.t2k.many.frag # found chain 1b12A in template set Warning: unaligning (T0547)S403 (1b12A)P125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1b12A)G128 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :R 1b12A 124 :H T0547 404 :NA 1b12A 126 :KR T0547 407 :ILTH 1b12A 129 :DIVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=44428 # 1f39A.402.37 read from T0547.t2k.many.frag # found chain 1f39A in template set Warning: unaligning (T0547)E406 (1f39A)G177 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSNA 1f39A 173 :AVEP T0547 407 :ILTH 1f39A 178 :DFCI Number of specific fragments extracted= 2 number of extra gaps= 1 total=44430 # 1khcA.402.10 read from T0547.t2k.many.frag # found chain 1khcA in training set Warning: unaligning (T0547)S403 (1khcA)F230 because S (epsilon) conformation "forbidden" or filtered. T0547 402 :R 1khcA 229 :E T0547 404 :NAEILTH 1khcA 231 :GIGDLVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=44432 # 1gttA.402.181 read from T0547.t2k.many.frag # found chain 1gttA in training set T0547 402 :RSNAEILTH 1gttA 182 :EIQPGDRVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=44433 # 1oi2A.402.280 read from T0547.t2k.many.frag # found chain 1oi2A in training set Warning: unaligning (T0547)S403 (1oi2A)L284 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1oi2A)G287 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :R 1oi2A 283 :P T0547 404 :NA 1oi2A 285 :QS T0547 407 :ILTH 1oi2A 288 :DRVI Number of specific fragments extracted= 3 number of extra gaps= 2 total=44436 # 1y0zA.402.296 read from T0547.t2k.many.frag # found chain 1y0zA in template set T0547 402 :RSNAEILTH 1y0zA 297 :PWQRGDVLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44437 # 1ia9A.402.87 read from T0547.t2k.many.frag # found chain 1ia9A in template set Warning: unaligning (T0547)E406 (1ia9A)G1640 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSNA 1ia9A 1636 :ILKS T0547 407 :ILTH 1ia9A 1641 :HLYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=44439 # 1vqvA.402.143 read from T0547.t2k.many.frag # found chain 1vqvA in template set T0547 402 :RSNAEILTH 1vqvA 144 :GARLGDSVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=44440 # 1f60A.402.268 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E406 (1f60A)G273 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSNA 1f60A 269 :VIKP T0547 407 :ILTH 1f60A 274 :MVVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=44442 # 2bpsA.402.44 read from T0547.t2k.many.frag # found chain 2bpsA in template set Warning: unaligning (T0547)R402 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bpsA)P43 Warning: unaligning (T0547)I407 (2bpsA)H48 because L (left) conformation "forbidden" or filtered. T0547 403 :SNAE 2bpsA 44 :PREG T0547 408 :LTH 2bpsA 49 :WIR Number of specific fragments extracted= 2 number of extra gaps= 2 total=44444 # 2cx1A.402.121 read from T0547.t2k.many.frag # found chain 2cx1A in training set Warning: unaligning (T0547)S403 (2cx1A)F122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T409 (2cx1A)V128 because Y (epsilon') conformation "forbidden" or filtered. T0547 402 :R 2cx1A 121 :S T0547 404 :NAEIL 2cx1A 123 :TRGDV T0547 410 :H 2cx1A 129 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=44447 # 1txoA.402.175 read from T0547.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0547)N404 (1txoA)R181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1txoA)G183 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RS 1txoA 179 :EA T0547 405 :A 1txoA 182 :A T0547 407 :ILTH 1txoA 184 :DRYL Number of specific fragments extracted= 3 number of extra gaps= 2 total=44450 # 1xjvA.402.226 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)E406 (1xjvA)G236 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSNA 1xjvA 232 :SLKV T0547 407 :ILTH 1xjvA 237 :SFLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=44452 # 1oygA.402.341 read from T0547.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)R402 (1oygA)G368 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T409 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)M376 Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)M376 T0547 403 :SNAEIL 1oygA 369 :ITSNDI Number of specific fragments extracted= 1 number of extra gaps= 2 total=44453 # 1jalA.402.349 read from T0547.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)N404 (1jalA)Q352 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1jalA)G354 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RS 1jalA 350 :IV T0547 405 :A 1jalA 353 :D T0547 407 :ILTH 1jalA 355 :DVMH Number of specific fragments extracted= 3 number of extra gaps= 2 total=44456 # 1whi.402.31 read from T0547.t2k.many.frag # found chain 1whi in training set T0547 402 :RSNAEILTH 1whi 32 :YANIGDVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44457 # 2az4A.402.337 read from T0547.t2k.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)S403 (2az4A)L339 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2az4A)G342 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :R 2az4A 338 :N T0547 404 :NA 2az4A 340 :QE T0547 407 :ILTH 2az4A 343 :SLYI Number of specific fragments extracted= 3 number of extra gaps= 2 total=44460 # 2evrA.402.170 read from T0547.t2k.many.frag # found chain 2evrA in template set T0547 402 :RSNAEILTH 2evrA 159 :ELVAGDLVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=44461 # 7odcA.403.374 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E406 (7odcA)G378 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SNA 7odcA 375 :MHV T0547 407 :ILTHL 7odcA 379 :DWMLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=44463 # 1qxyA.403.83 read from T0547.t2k.many.frag # found chain 1qxyA in training set Warning: unaligning (T0547)A405 (1qxyA)E86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1qxyA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SN 1qxyA 84 :IR T0547 407 :ILTHL 1qxyA 88 :DLVNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=44465 # 1knwA.403.363 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A405 (1knwA)A366 because P (beta_P) conformation "forbidden" or filtered. T0547 403 :SN 1knwA 364 :VK T0547 406 :EILTHL 1knwA 367 :GDYLVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44467 # 1chmA.403.238 read from T0547.t2k.many.frag # found chain 1chmA in template set Warning: unaligning (T0547)S403 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)N241 Warning: unaligning (T0547)N404 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)N241 Warning: unaligning (T0547)A405 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)G243 Warning: unaligning (T0547)E406 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)G243 T0547 407 :ILTHL 1chmA 244 :DILSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=44468 # 1xjvA.403.227 read from T0547.t2k.many.frag # found chain 1xjvA in training set T0547 403 :SNAEILTHL 1xjvA 233 :LKVGSFLRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=44469 # 1f60A.403.269 read from T0547.t2k.many.frag # found chain 1f60A in training set T0547 403 :SNAEILTHL 1f60A 270 :IKPGMVVTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=44470 # 1i40A.403.78 read from T0547.t2k.many.frag # found chain 1i40A in template set Warning: unaligning (T0547)A405 (1i40A)P81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1i40A)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H410 (1i40A)R86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L411 (1i40A)C87 because Y (epsilon') conformation "forbidden" or filtered. T0547 403 :SN 1i40A 79 :LQ T0547 407 :ILT 1i40A 83 :SVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=44472 # 1vctA.403.170 read from T0547.t2k.many.frag # found chain 1vctA in template set T0547 403 :SNAEILTHL 1vctA 171 :IRAGDVLIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=44473 # 1gttA.403.182 read from T0547.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0547)E406 (1gttA)G186 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SNA 1gttA 183 :IQP T0547 407 :ILTHL 1gttA 187 :DRVRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44475 # 1sv6A.403.221 read from T0547.t2k.many.frag # found chain 1sv6A in template set T0547 403 :SNAEILTHL 1sv6A 222 :LRTGDIILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=44476 # 1khcA.403.11 read from T0547.t2k.many.frag # found chain 1khcA in training set T0547 403 :SNAEILTHL 1khcA 230 :FGIGDLVWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=44477 # 1w23A.403.198 read from T0547.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)S403 because of BadResidue code BAD_PEPTIDE at template residue (1w23A)G199 Warning: unaligning (T0547)N404 (1w23A)P200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1w23A)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 405 :A 1w23A 201 :S T0547 407 :ILTHL 1w23A 203 :VTVVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=44479 # 1r17A.403.65 read from T0547.t2k.many.frag # found chain 1r17A in template set T0547 403 :SNAEILTHL 1r17A 321 :VKSGDTMTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44480 # 2d1pC.403.20 read from T0547.t2k.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)S403 (2d1pC)L21 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (2d1pC)S22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2d1pC)G24 because T (delta_L) conformation "forbidden" or filtered. T0547 405 :A 2d1pC 23 :E T0547 407 :ILTHL 2d1pC 25 :DELLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=44482 # 1y0zA.403.297 read from T0547.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)S403 (1y0zA)W298 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1y0zA)G301 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :NA 1y0zA 299 :QR T0547 407 :ILTHL 1y0zA 302 :DVLLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=44484 # 2cx1A.403.122 read from T0547.t2k.many.frag # found chain 2cx1A in training set T0547 403 :SNAEILTHL 2cx1A 122 :FTRGDVVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44485 # 1zl0A.403.209 read from T0547.t2k.many.frag # found chain 1zl0A in training set Warning: unaligning (T0547)S403 (1zl0A)A208 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)H410 (1zl0A)V215 because P (beta_P) conformation "forbidden" or filtered. T0547 404 :NAEILT 1zl0A 209 :PAGSIL T0547 411 :L 1zl0A 216 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=44487 # 1fm0D.403.65 read from T0547.t2k.many.frag # found chain 1fm0D in training set T0547 403 :SNAEILTHL 1fm0D 66 :LTDGDEVAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=44488 # 1ifrA.403.57 read from T0547.t2k.many.frag # found chain 1ifrA in training set Warning: unaligning (T0547)A405 (1ifrA)A491 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1ifrA)G492 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SN 1ifrA 489 :LK T0547 407 :ILTHL 1ifrA 493 :QVVTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=44490 # 1ds1A.403.263 read from T0547.t2k.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)E406 (1ds1A)G267 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SNA 1ds1A 264 :LEP T0547 407 :ILTHL 1ds1A 268 :DLLIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44492 # 1vqvA.403.144 read from T0547.t2k.many.frag # found chain 1vqvA in template set Warning: unaligning (T0547)S403 (1vqvA)A145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1vqvA)G148 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :NA 1vqvA 146 :RL T0547 407 :ILTHL 1vqvA 149 :DSVFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=44494 # 1wmmA.403.34 read from T0547.t2k.many.frag # found chain 1wmmA in template set Warning: unaligning (T0547)E406 (1wmmA)G38 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H410 (1wmmA)V42 because P (beta_P) conformation "forbidden" or filtered. T0547 403 :SNA 1wmmA 35 :VKP T0547 407 :ILT 1wmmA 39 :DKL T0547 411 :L 1wmmA 43 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=44497 # 1l6rA.403.166 read from T0547.t2k.many.frag # found chain 1l6rA in training set T0547 403 :SNAEILTHL 1l6rA 164 :LEYDEILVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=44498 # 2evrA.403.171 read from T0547.t2k.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)E406 (2evrA)G163 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SNA 2evrA 160 :LVA T0547 407 :ILTHL 2evrA 164 :DLVFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=44500 2a1xA expands to /projects/compbio/data/pdb/2a1x.pdb.gz 2a1xA:# 2a1xA.403.219 read from T0547.t2k.many.frag # adding 2a1xA to template set # found chain 2a1xA in template set Warning: unaligning (T0547)L411 (2a1xA)F258 because Y (epsilon') conformation "forbidden" or filtered. T0547 403 :SNAEILTH 2a1xA 250 :MEKGDTVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=44501 # 1b12A.403.49 read from T0547.t2k.many.frag # found chain 1b12A in template set Warning: unaligning (T0547)N404 (1b12A)K126 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1b12A)G128 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :S 1b12A 125 :P T0547 405 :A 1b12A 127 :R T0547 407 :ILTHL 1b12A 129 :DIVVF Number of specific fragments extracted= 3 number of extra gaps= 2 total=44504 # 1oi2A.403.281 read from T0547.t2k.many.frag # found chain 1oi2A in training set Warning: unaligning (T0547)E406 (1oi2A)G287 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SNA 1oi2A 284 :LQS T0547 407 :ILTHL 1oi2A 288 :DRVIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=44506 # 1oygA.403.342 read from T0547.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)S403 (1oygA)I369 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T409 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)M376 Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)M376 T0547 404 :NAEIL 1oygA 370 :TSNDI T0547 411 :L 1oygA 377 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=44508 # 2bpsA.403.45 read from T0547.t2k.many.frag # found chain 2bpsA in template set Warning: unaligning (T0547)E406 (2bpsA)G47 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I407 (2bpsA)H48 because L (left) conformation "forbidden" or filtered. T0547 403 :SNA 2bpsA 44 :PRE T0547 408 :LTHL 2bpsA 49 :WIRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44510 # 1sqwA.403.124 read from T0547.t2k.many.frag # found chain 1sqwA in template set T0547 403 :SNAEILTHL 1sqwA 125 :TSQYQGVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44511 # 1knwA.404.364 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E406 (1knwA)G367 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :NA 1knwA 365 :KA T0547 407 :ILTHLI 1knwA 368 :DYLVLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=44513 # 7odcA.404.375 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N404 (7odcA)H376 because E (beta_S) conformation "forbidden" or filtered. T0547 405 :AEILTHLI 7odcA 377 :VGDWMLFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=44514 # 1ds1A.404.264 read from T0547.t2k.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)N404 (1ds1A)E265 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1ds1A)G267 because T (delta_L) conformation "forbidden" or filtered. T0547 405 :A 1ds1A 266 :P T0547 407 :ILTHLI 1ds1A 268 :DLLIVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=44516 # 1y0zA.404.298 read from T0547.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)N404 (1y0zA)Q299 because E (beta_S) conformation "forbidden" or filtered. T0547 405 :AEILTHLI 1y0zA 300 :RGDVLLID Number of specific fragments extracted= 1 number of extra gaps= 1 total=44517 # 2a1xA.404.220 read from T0547.t2k.many.frag # found chain 2a1xA in template set Warning: unaligning (T0547)E406 (2a1xA)G253 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :NA 2a1xA 251 :EK T0547 407 :ILTHLI 2a1xA 254 :DTVFFH Number of specific fragments extracted= 2 number of extra gaps= 1 total=44519 # 1gttA.404.183 read from T0547.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0547)E406 (1gttA)G186 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :NA 1gttA 184 :QP T0547 407 :ILTHLI 1gttA 187 :DRVRVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44521 # 1r17A.404.66 read from T0547.t2k.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)E406 (1r17A)G324 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :NA 1r17A 322 :KS T0547 407 :ILTHLI 1r17A 325 :DTMTVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=44523 # 2d1pC.404.21 read from T0547.t2k.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)N404 (2d1pC)S22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2d1pC)G24 because T (delta_L) conformation "forbidden" or filtered. T0547 405 :A 2d1pC 23 :E T0547 407 :ILTHLI 2d1pC 25 :DELLLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=44525 # 1s2oA.404.176 read from T0547.t2k.many.frag # found chain 1s2oA in training set Warning: unaligning (T0547)I407 (1s2oA)Q180 because G (3-10) conformation "forbidden" or filtered. T0547 404 :NAE 1s2oA 177 :EPS T0547 408 :LTHLI 1s2oA 181 :TLVCG Number of specific fragments extracted= 2 number of extra gaps= 1 total=44527 # 2cx1A.404.123 read from T0547.t2k.many.frag # found chain 2cx1A in training set T0547 404 :NAEILTHLI 2cx1A 123 :TRGDVVAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44528 # 1otjA.404.240 read from T0547.t2k.many.frag # found chain 1otjA in template set Warning: unaligning (T0547)E406 (1otjA)N243 because L (left) conformation "forbidden" or filtered. T0547 404 :NA 1otjA 241 :QP T0547 407 :ILTHLI 1otjA 244 :DIAIWD Number of specific fragments extracted= 2 number of extra gaps= 1 total=44530 # 1l6rA.404.167 read from T0547.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)N404 (1l6rA)E165 because P (beta_P) conformation "forbidden" or filtered. T0547 405 :AEILTHLI 1l6rA 166 :YDEILVIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=44531 # 1ifrA.404.58 read from T0547.t2k.many.frag # found chain 1ifrA in training set Warning: unaligning (T0547)N404 (1ifrA)K490 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1ifrA)A491 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1ifrA)G492 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLI 1ifrA 493 :QVVTIW Number of specific fragments extracted= 1 number of extra gaps= 1 total=44532 # 1khcA.404.12 read from T0547.t2k.many.frag # found chain 1khcA in training set T0547 404 :NAEILTHLI 1khcA 231 :GIGDLVWGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=44533 # 1fm0D.404.66 read from T0547.t2k.many.frag # found chain 1fm0D in training set Warning: unaligning (T0547)E406 (1fm0D)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I412 (1fm0D)F75 because Y (epsilon') conformation "forbidden" or filtered. T0547 404 :NA 1fm0D 67 :TD T0547 407 :ILTHL 1fm0D 70 :DEVAF Number of specific fragments extracted= 2 number of extra gaps= 2 total=44535 # 1zl0A.404.210 read from T0547.t2k.many.frag # found chain 1zl0A in training set Warning: unaligning (T0547)E406 (1zl0A)G211 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :NA 1zl0A 209 :PA T0547 407 :ILTHLI 1zl0A 212 :SILVLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=44537 # 1w23A.404.199 read from T0547.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)E406 (1w23A)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :NA 1w23A 200 :PS T0547 407 :ILTHLI 1w23A 203 :VTVVIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44539 # 2a40B.404.158 read from T0547.t2k.many.frag # found chain 2a40B in training set T0547 404 :NAEILTHLI 2a40B 159 :HLNDVMLMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=44540 # 2ab0A.404.96 read from T0547.t2k.many.frag # found chain 2ab0A in training set T0547 404 :NAEILTHLI 2ab0A 97 :RSGRIVAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=44541 # 1sqwA.404.125 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)E406 (1sqwA)Y128 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :NA 1sqwA 126 :SQ T0547 407 :ILTHLI 1sqwA 129 :QGVVVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=44543 # 1f60A.404.270 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)I412 because of BadResidue code BAD_PEPTIDE in next template residue (1f60A)P280 T0547 404 :NAEILTHL 1f60A 271 :KPGMVVTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=44544 # 1wmmA.404.35 read from T0547.t2k.many.frag # found chain 1wmmA in template set Warning: unaligning (T0547)E406 (1wmmA)G38 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :NA 1wmmA 36 :KP T0547 407 :ILTHLI 1wmmA 39 :DKLVIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=44546 # 1xjvA.404.228 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)E406 (1xjvA)G236 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :NA 1xjvA 234 :KV T0547 407 :ILTHLI 1xjvA 237 :SFLRIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=44548 # 1ru3A.404.336 read from T0547.t2k.many.frag # found chain 1ru3A in template set T0547 404 :NAEILTHLI 1ru3A 337 :RKGDMHVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=44549 # 1vctA.404.171 read from T0547.t2k.many.frag # found chain 1vctA in template set Warning: unaligning (T0547)A405 (1vctA)A173 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1vctA)G174 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :N 1vctA 172 :R T0547 407 :ILTHLI 1vctA 175 :DVLIGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=44551 # 1qmyA.404.144 read from T0547.t2k.many.frag # found chain 1qmyA in template set Warning: unaligning (T0547)I407 (1qmyA)D176 because G (3-10) conformation "forbidden" or filtered. T0547 404 :NAE 1qmyA 173 :DPS T0547 408 :LTHLI 1qmyA 177 :VLVFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44553 # 1i40A.404.79 read from T0547.t2k.many.frag # found chain 1i40A in template set Warning: unaligning (T0547)H410 (1i40A)R86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L411 (1i40A)C87 because Y (epsilon') conformation "forbidden" or filtered. T0547 404 :NAEILT 1i40A 80 :QPGSVT T0547 412 :I 1i40A 88 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=44555 # 1qxyA.404.84 read from T0547.t2k.many.frag # found chain 1qxyA in training set T0547 404 :NAEILTHLI 1qxyA 85 :REGDLVNID Number of specific fragments extracted= 1 number of extra gaps= 0 total=44556 # 1d3yA.404.120 read from T0547.t2k.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)I407 (1d3yA)F192 because Y (epsilon') conformation "forbidden" or filtered. T0547 404 :NAE 1d3yA 189 :DAD T0547 408 :LTHLI 1d3yA 193 :ILAIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=44558 # 1chmA.404.239 read from T0547.t2k.many.frag # found chain 1chmA in template set Warning: unaligning (T0547)N404 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)N241 Warning: unaligning (T0547)A405 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)G243 Warning: unaligning (T0547)E406 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)G243 T0547 407 :ILTHLI 1chmA 244 :DILSLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=44559 # 1knwA.405.365 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 405 :AEILTHLIT 1knwA 366 :AGDYLVLHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=44560 # 7odcA.405.376 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L411 (7odcA)F383 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)T413 (7odcA)N385 because L (left) conformation "forbidden" or filtered. T0547 405 :AEILTH 7odcA 377 :VGDWML T0547 412 :I 7odcA 384 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=44562 # 1ds1A.405.265 read from T0547.t2k.many.frag # found chain 1ds1A in training set T0547 405 :AEILTHLIT 1ds1A 266 :PGDLLIVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=44563 # 1s2oA.405.177 read from T0547.t2k.many.frag # found chain 1s2oA in training set T0547 405 :AEILTHLIT 1s2oA 178 :PSQTLVCGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=44564 # 2a1xA.405.221 read from T0547.t2k.many.frag # found chain 2a1xA in template set Warning: unaligning (T0547)A405 (2a1xA)K252 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2a1xA)G253 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLIT 2a1xA 254 :DTVFFHP Number of specific fragments extracted= 1 number of extra gaps= 1 total=44565 # 1y0zA.405.299 read from T0547.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)E406 (1y0zA)G301 because T (delta_L) conformation "forbidden" or filtered. T0547 405 :A 1y0zA 300 :R T0547 407 :ILTHLIT 1y0zA 302 :DVLLIDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=44567 # 1w23A.405.200 read from T0547.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)E406 (1w23A)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 405 :A 1w23A 201 :S T0547 407 :ILTHLIT 1w23A 203 :VTVVIVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=44569 # 1r17A.405.67 read from T0547.t2k.many.frag # found chain 1r17A in template set T0547 405 :AEILTHLIT 1r17A 323 :SGDTMTVNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=44570 # 1otjA.405.241 read from T0547.t2k.many.frag # found chain 1otjA in template set Warning: unaligning (T0547)E406 (1otjA)N243 because L (left) conformation "forbidden" or filtered. T0547 405 :A 1otjA 242 :P T0547 407 :ILTHLIT 1otjA 244 :DIAIWDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=44572 # 1f60A.405.271 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)I412 because of BadResidue code BAD_PEPTIDE in next template residue (1f60A)P280 Warning: unaligning (T0547)T413 because of BadResidue code BAD_PEPTIDE at template residue (1f60A)P280 T0547 405 :AEILTHL 1f60A 272 :PGMVVTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=44573 # 1gttA.405.184 read from T0547.t2k.many.frag # found chain 1gttA in training set T0547 405 :AEILTHLIT 1gttA 185 :PGDRVRVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44574 # 1d3yA.405.121 read from T0547.t2k.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)A405 (1d3yA)A190 because P (beta_P) conformation "forbidden" or filtered. T0547 406 :EILTHLIT 1d3yA 191 :DFILAIET Number of specific fragments extracted= 1 number of extra gaps= 1 total=44575 # 2d1pC.405.22 read from T0547.t2k.many.frag # found chain 2d1pC in template set T0547 405 :AEILTHLIT 2d1pC 23 :EGDELLLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=44576 # 1xjvA.405.229 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)E406 (1xjvA)G236 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T413 (1xjvA)S243 because L (left) conformation "forbidden" or filtered. T0547 405 :A 1xjvA 235 :V T0547 407 :ILTHLI 1xjvA 237 :SFLRIY Number of specific fragments extracted= 2 number of extra gaps= 2 total=44578 # 2a40B.405.159 read from T0547.t2k.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)I412 (2a40B)G167 because Y (epsilon') conformation "forbidden" or filtered. T0547 405 :AEILTHL 2a40B 160 :LNDVMLM T0547 413 :T 2a40B 168 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=44580 # 2ab0A.405.97 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)E406 (2ab0A)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 405 :A 2ab0A 98 :S T0547 407 :ILTHLIT 2ab0A 100 :RIVAAIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=44582 # 1ifrA.405.59 read from T0547.t2k.many.frag # found chain 1ifrA in training set T0547 405 :AEILTHLIT 1ifrA 491 :AGQVVTIWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44583 # 1sqwA.405.126 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)E406 (1sqwA)Y128 because T (delta_L) conformation "forbidden" or filtered. T0547 405 :A 1sqwA 127 :Q T0547 407 :ILTHLIT 1sqwA 129 :QGVVVYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=44585 # 1zl0A.405.211 read from T0547.t2k.many.frag # found chain 1zl0A in training set Warning: unaligning (T0547)A405 (1zl0A)A210 because P (beta_P) conformation "forbidden" or filtered. T0547 406 :EILTHLIT 1zl0A 211 :GSILVLED Number of specific fragments extracted= 1 number of extra gaps= 1 total=44586 # 2cx1A.405.124 read from T0547.t2k.many.frag # found chain 2cx1A in training set Warning: unaligning (T0547)E406 (2cx1A)G125 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T409 (2cx1A)V128 because Y (epsilon') conformation "forbidden" or filtered. T0547 405 :A 2cx1A 124 :R T0547 407 :IL 2cx1A 126 :DV T0547 410 :HLIT 2cx1A 129 :AALY Number of specific fragments extracted= 3 number of extra gaps= 2 total=44589 # 1l6rA.405.168 read from T0547.t2k.many.frag # found chain 1l6rA in training set T0547 405 :AEILTHLIT 1l6rA 166 :YDEILVIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=44590 # 1wddA.405.286 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)A405 (1wddA)N287 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1wddA)G288 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H410 (1wddA)H292 because P (beta_P) conformation "forbidden" or filtered. T0547 407 :ILT 1wddA 289 :LLL T0547 411 :LIT 1wddA 293 :IHR Number of specific fragments extracted= 2 number of extra gaps= 2 total=44592 # 1khcA.405.13 read from T0547.t2k.many.frag # found chain 1khcA in training set T0547 405 :AEILTHLIT 1khcA 232 :IGDLVWGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=44593 # 1jr7A.405.264 read from T0547.t2k.many.frag # found chain 1jr7A in template set Warning: unaligning (T0547)E406 (1jr7A)G280 because T (delta_L) conformation "forbidden" or filtered. T0547 405 :A 1jr7A 279 :V T0547 407 :ILTHLIT 1jr7A 281 :KFLLINN Number of specific fragments extracted= 2 number of extra gaps= 1 total=44595 1tffA expands to /projects/compbio/data/pdb/1tff.pdb.gz 1tffA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1tffA.405.212 read from T0547.t2k.many.frag # adding 1tffA to template set # found chain 1tffA in template set Warning: unaligning (T0547)E406 (1tffA)P214 because P (beta_P) conformation "forbidden" or filtered. T0547 405 :A 1tffA 213 :T T0547 407 :ILTHLIT 1tffA 215 :SVYLLYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=44597 # 1txoA.405.178 read from T0547.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0547)E406 (1txoA)G183 because T (delta_L) conformation "forbidden" or filtered. T0547 405 :A 1txoA 182 :A T0547 407 :ILTHLIT 1txoA 184 :DRYLLCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=44599 # 1vctA.405.172 read from T0547.t2k.many.frag # found chain 1vctA in template set Warning: unaligning (T0547)E406 (1vctA)G174 because T (delta_L) conformation "forbidden" or filtered. T0547 405 :A 1vctA 173 :A T0547 407 :ILTHLIT 1vctA 175 :DVLIGRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=44601 # 1wmmA.405.36 read from T0547.t2k.many.frag # found chain 1wmmA in template set T0547 405 :AEILTHLIT 1wmmA 37 :PGDKLVIYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44602 # 1fm0D.405.67 read from T0547.t2k.many.frag # found chain 1fm0D in training set Warning: unaligning (T0547)I412 (1fm0D)F75 because Y (epsilon') conformation "forbidden" or filtered. T0547 405 :AEILTHL 1fm0D 68 :DGDEVAF T0547 413 :T 1fm0D 76 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=44604 # 1ru3A.405.337 read from T0547.t2k.many.frag # found chain 1ru3A in template set T0547 405 :AEILTHLIT 1ru3A 338 :KGDMHVEFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=44605 # 1knwA.406.366 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)T413 (1knwA)D374 because L (left) conformation "forbidden" or filtered. T0547 406 :EILTHLI 1knwA 367 :GDYLVLH T0547 414 :K 1knwA 375 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=44607 # 7odcA.406.377 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E406 (7odcA)G378 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (7odcA)M386 because G (3-10) conformation "forbidden" or filtered. T0547 407 :ILTHLIT 7odcA 379 :DWMLFEN Number of specific fragments extracted= 1 number of extra gaps= 2 total=44608 # 1ds1A.406.266 read from T0547.t2k.many.frag # found chain 1ds1A in training set T0547 406 :EILTHLITK 1ds1A 267 :GDLLIVDNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=44609 # 2a1xA.406.222 read from T0547.t2k.many.frag # found chain 2a1xA in template set T0547 406 :EILTHLITK 2a1xA 253 :GDTVFFHPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44610 # 1y0zA.406.300 read from T0547.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)E406 (1y0zA)G301 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1y0zA 302 :DVLLIDNW Number of specific fragments extracted= 1 number of extra gaps= 1 total=44611 # 1d3yA.406.122 read from T0547.t2k.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)I407 (1d3yA)F192 because Y (epsilon') conformation "forbidden" or filtered. T0547 406 :E 1d3yA 191 :D T0547 408 :LTHLITK 1d3yA 193 :ILAIETS Number of specific fragments extracted= 2 number of extra gaps= 1 total=44613 # 1otjA.406.242 read from T0547.t2k.many.frag # found chain 1otjA in template set Warning: unaligning (T0547)E406 (1otjA)N243 because L (left) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1otjA 244 :DIAIWDNR Number of specific fragments extracted= 1 number of extra gaps= 1 total=44614 # 1w23A.406.201 read from T0547.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)E406 (1w23A)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1w23A 203 :VTVVIVKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=44615 # 1f60A.406.272 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E406 (1f60A)G273 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I412 because of BadResidue code BAD_PEPTIDE in next template residue (1f60A)P280 Warning: unaligning (T0547)T413 because of BadResidue code BAD_PEPTIDE at template residue (1f60A)P280 T0547 407 :ILTHL 1f60A 274 :MVVTF T0547 414 :K 1f60A 281 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=44617 # 2d1pC.406.23 read from T0547.t2k.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)E406 (2d1pC)G24 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I412 (2d1pC)L30 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T413 (2d1pC)Q31 because S (epsilon) conformation "forbidden" or filtered. T0547 407 :ILTHL 2d1pC 25 :DELLL T0547 414 :K 2d1pC 32 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=44619 # 1s2oA.406.178 read from T0547.t2k.many.frag # found chain 1s2oA in training set Warning: unaligning (T0547)I412 (1s2oA)G185 because Y (epsilon') conformation "forbidden" or filtered. T0547 406 :EILTHL 1s2oA 179 :SQTLVC T0547 413 :TK 1s2oA 186 :DS Number of specific fragments extracted= 2 number of extra gaps= 1 total=44621 # 2ab0A.406.98 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)E406 (2ab0A)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 2ab0A 100 :RIVAAICA Number of specific fragments extracted= 1 number of extra gaps= 1 total=44622 # 1xjvA.406.230 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)T413 (1xjvA)S243 because L (left) conformation "forbidden" or filtered. T0547 406 :EILTHLI 1xjvA 236 :GSFLRIY T0547 414 :K 1xjvA 244 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=44624 # 2a40B.406.160 read from T0547.t2k.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)L411 (2a40B)M166 because Y (epsilon') conformation "forbidden" or filtered. T0547 406 :EILTH 2a40B 161 :NDVML T0547 412 :ITK 2a40B 167 :GDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=44626 # 1r17A.406.68 read from T0547.t2k.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)E406 (1r17A)G324 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1r17A 325 :DTMTVNID Number of specific fragments extracted= 1 number of extra gaps= 1 total=44627 # 1wddA.406.287 read from T0547.t2k.many.frag # found chain 1wddA in training set T0547 406 :EILTHLITK 1wddA 288 :GLLLHIHRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44628 # 1jr7A.406.265 read from T0547.t2k.many.frag # found chain 1jr7A in template set T0547 406 :EILTHLITK 1jr7A 280 :GKFLLINNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44629 # 1txoA.406.179 read from T0547.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0547)E406 (1txoA)G183 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1txoA 184 :DRYLLCSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=44630 # 1ufaA.406.258 read from T0547.t2k.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)E406 (1ufaA)G259 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1ufaA 260 :LRVLARNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=44631 # 1fyeA.406.112 read from T0547.t2k.many.frag # found chain 1fyeA in training set T0547 406 :EILTHLITK 1fyeA 113 :GALYIGWSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44632 # 1l6rA.406.169 read from T0547.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)I412 (1l6rA)G173 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (1l6rA)S175 because Y (epsilon') conformation "forbidden" or filtered. T0547 406 :EILTHL 1l6rA 167 :DEILVI T0547 413 :T 1l6rA 174 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=44634 # 1gttA.406.185 read from T0547.t2k.many.frag # found chain 1gttA in training set T0547 406 :EILTHLITK 1gttA 186 :GDRVRVLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=44635 # 2cx1A.406.125 read from T0547.t2k.many.frag # found chain 2cx1A in training set T0547 406 :EILTHLITK 2cx1A 125 :GDVVAALYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=44636 # 1ifrA.406.60 read from T0547.t2k.many.frag # found chain 1ifrA in training set T0547 406 :EILTHLITK 1ifrA 492 :GQVVTIWAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44637 # 1zx8A.406.75 read from T0547.t2k.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)E406 (1zx8A)G64 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1zx8A 65 :DVGYWPPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=44638 # 1sqwA.406.127 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)E406 (1sqwA)Y128 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1sqwA 129 :QGVVVYSM Number of specific fragments extracted= 1 number of extra gaps= 1 total=44639 # 1tffA.406.213 read from T0547.t2k.many.frag # found chain 1tffA in template set Warning: unaligning (T0547)K414 (1tffA)T222 because L (left) conformation "forbidden" or filtered. T0547 406 :EILTHLIT 1tffA 214 :PSVYLLYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=44640 # 1acc.406.585 read from T0547.t2k.many.frag # found chain 1acc in template set T0547 406 :EILTHLITK 1acc 586 :KMNILIRDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=44641 # 1izoA.406.310 read from T0547.t2k.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)E406 (1izoA)G311 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1izoA 312 :TSVLLDLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=44642 # 1vjoA.406.227 read from T0547.t2k.many.frag # found chain 1vjoA in training set Warning: unaligning (T0547)E406 (1vjoA)G216 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1vjoA 217 :ASPFTMSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=44643 # 1knwA.407.367 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)T413 (1knwA)D374 because L (left) conformation "forbidden" or filtered. T0547 407 :ILTHLI 1knwA 368 :DYLVLH T0547 414 :KK 1knwA 375 :TG Number of specific fragments extracted= 2 number of extra gaps= 1 total=44645 # 7odcA.407.378 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)T413 (7odcA)N385 because L (left) conformation "forbidden" or filtered. T0547 407 :ILTHLI 7odcA 379 :DWMLFE T0547 414 :KK 7odcA 386 :MG Number of specific fragments extracted= 2 number of extra gaps= 1 total=44647 # 1d3yA.407.123 read from T0547.t2k.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)I407 (1d3yA)F192 because Y (epsilon') conformation "forbidden" or filtered. T0547 408 :LTHLITKK 1d3yA 193 :ILAIETSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=44648 # 2a1xA.407.223 read from T0547.t2k.many.frag # found chain 2a1xA in template set Warning: unaligning (T0547)L411 (2a1xA)F258 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (2a1xA)L261 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (2a1xA)L262 because P (beta_P) conformation "forbidden" or filtered. T0547 407 :ILTH 2a1xA 254 :DTVF T0547 412 :IT 2a1xA 259 :HP Number of specific fragments extracted= 2 number of extra gaps= 2 total=44650 # 1otjA.407.243 read from T0547.t2k.many.frag # found chain 1otjA in template set T0547 407 :ILTHLITKK 1otjA 244 :DIAIWDNRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44651 # 1ds1A.407.267 read from T0547.t2k.many.frag # found chain 1ds1A in training set T0547 407 :ILTHLITKK 1ds1A 268 :DLLIVDNFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=44652 # 2d1pC.407.24 read from T0547.t2k.many.frag # found chain 2d1pC in template set T0547 407 :ILTHLITKK 2d1pC 25 :DELLLLQDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=44653 # 1y0zA.407.301 read from T0547.t2k.many.frag # found chain 1y0zA in template set T0547 407 :ILTHLITKK 1y0zA 302 :DVLLIDNWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44654 # 1w23A.407.202 read from T0547.t2k.many.frag # found chain 1w23A in training set T0547 407 :ILTHLITKK 1w23A 203 :VTVVIVKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=44655 # 2ab0A.407.99 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)T413 (2ab0A)C106 because S (epsilon) conformation "forbidden" or filtered. T0547 407 :ILTHLI 2ab0A 100 :RIVAAI T0547 414 :KK 2ab0A 107 :AA Number of specific fragments extracted= 2 number of extra gaps= 1 total=44657 # 1f60A.407.273 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)I412 because of BadResidue code BAD_PEPTIDE in next template residue (1f60A)P280 Warning: unaligning (T0547)T413 because of BadResidue code BAD_PEPTIDE at template residue (1f60A)P280 Warning: unaligning (T0547)K415 (1f60A)G282 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHL 1f60A 274 :MVVTF T0547 414 :K 1f60A 281 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=44659 # 2a40B.407.161 read from T0547.t2k.many.frag # found chain 2a40B in training set T0547 407 :ILTHLITKK 2a40B 162 :DVMLMGDFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=44660 # 1wddA.407.288 read from T0547.t2k.many.frag # found chain 1wddA in training set T0547 407 :ILTHLITKK 1wddA 289 :LLLHIHRAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=44661 # 1s2oA.407.179 read from T0547.t2k.many.frag # found chain 1s2oA in training set Warning: unaligning (T0547)K414 (1s2oA)S187 because E (beta_S) conformation "forbidden" or filtered. T0547 407 :ILTHLIT 1s2oA 180 :QTLVCGD T0547 415 :K 1s2oA 188 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=44663 # 1l6rA.407.170 read from T0547.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)K414 (1l6rA)S175 because Y (epsilon') conformation "forbidden" or filtered. T0547 407 :ILTHLIT 1l6rA 168 :EILVIGD T0547 415 :K 1l6rA 176 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=44665 # 1xjvA.407.231 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)T413 (1xjvA)S243 because L (left) conformation "forbidden" or filtered. T0547 407 :ILTHLI 1xjvA 237 :SFLRIY T0547 414 :KK 1xjvA 244 :LH Number of specific fragments extracted= 2 number of extra gaps= 1 total=44667 # 1jr7A.407.266 read from T0547.t2k.many.frag # found chain 1jr7A in template set T0547 407 :ILTHLITKK 1jr7A 281 :KFLLINNLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=44668 # 1fyeA.407.113 read from T0547.t2k.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)T413 (1fyeA)S120 because S (epsilon) conformation "forbidden" or filtered. T0547 407 :ILTHLI 1fyeA 114 :ALYIGW T0547 414 :KK 1fyeA 121 :AG Number of specific fragments extracted= 2 number of extra gaps= 1 total=44670 # 1ufaA.407.259 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 407 :ILTHLITKK 1ufaA 260 :LRVLARNPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=44671 # 1txoA.407.180 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 407 :ILTHLITKK 1txoA 184 :DRYLLCSDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=44672 # 1zx8A.407.76 read from T0547.t2k.many.frag # found chain 1zx8A in template set T0547 407 :ILTHLITKK 1zx8A 65 :DVGYWPPGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=44673 # 1r17A.407.69 read from T0547.t2k.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)K414 (1r17A)D332 because P (beta_P) conformation "forbidden" or filtered. T0547 407 :ILTHLIT 1r17A 325 :DTMTVNI T0547 415 :K 1r17A 333 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=44675 # 1tffA.407.214 read from T0547.t2k.many.frag # found chain 1tffA in template set Warning: unaligning (T0547)K414 (1tffA)T222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1tffA)S223 because L (left) conformation "forbidden" or filtered. T0547 407 :ILTHLIT 1tffA 215 :SVYLLYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=44676 # 1acc.407.586 read from T0547.t2k.many.frag # found chain 1acc in template set T0547 407 :ILTHLITKK 1acc 587 :MNILIRDKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=44677 # 1sqwA.407.128 read from T0547.t2k.many.frag # found chain 1sqwA in template set T0547 407 :ILTHLITKK 1sqwA 129 :QGVVVYSMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44678 # 1zl0A.407.213 read from T0547.t2k.many.frag # found chain 1zl0A in training set Warning: unaligning (T0547)K414 (1zl0A)V219 because E (beta_S) conformation "forbidden" or filtered. T0547 407 :ILTHLIT 1zl0A 212 :SILVLED T0547 415 :K 1zl0A 220 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=44680 # 1vjoA.407.228 read from T0547.t2k.many.frag # found chain 1vjoA in training set T0547 407 :ILTHLITKK 1vjoA 217 :ASPFTMSSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=44681 # 1gttA.407.186 read from T0547.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0547)T413 (1gttA)A193 because Y (epsilon') conformation "forbidden" or filtered. T0547 407 :ILTHLI 1gttA 187 :DRVRVL T0547 414 :KK 1gttA 194 :EG Number of specific fragments extracted= 2 number of extra gaps= 1 total=44683 # 1oxxK.407.270 read from T0547.t2k.many.frag # found chain 1oxxK in training set T0547 407 :ILTHLITKK 1oxxK 271 :RAIIGIRPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=44684 # 2bwrA.407.295 read from T0547.t2k.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)K415 (2bwrA)G304 because Y (epsilon') conformation "forbidden" or filtered. T0547 407 :ILTHLITK 2bwrA 296 :DIIGFGDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=44685 # 1knwA.408.368 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)T413 (1knwA)D374 because L (left) conformation "forbidden" or filtered. T0547 408 :LTHLI 1knwA 369 :YLVLH T0547 414 :KKA 1knwA 375 :TGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=44687 # 2d1pC.408.25 read from T0547.t2k.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)I412 (2d1pC)L30 because Y (epsilon') conformation "forbidden" or filtered. T0547 408 :LTHL 2d1pC 26 :ELLL T0547 413 :TKKA 2d1pC 31 :QDGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44689 # 2ab0A.408.100 read from T0547.t2k.many.frag # found chain 2ab0A in training set T0547 408 :LTHLITKKA 2ab0A 101 :IVAAICAAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=44690 # 1d3yA.408.124 read from T0547.t2k.many.frag # found chain 1d3yA in template set T0547 408 :LTHLITKKA 1d3yA 193 :ILAIETSGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=44691 # 7odcA.408.379 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)T413 (7odcA)N385 because L (left) conformation "forbidden" or filtered. T0547 408 :LTHLI 7odcA 380 :WMLFE T0547 414 :KKA 7odcA 386 :MGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=44693 # 1otjA.408.244 read from T0547.t2k.many.frag # found chain 1otjA in template set T0547 408 :LTHLITKKA 1otjA 245 :IAIWDNRVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=44694 # 2a40B.408.162 read from T0547.t2k.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)L411 (2a40B)M166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I412 (2a40B)G167 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (2a40B)N170 because L (left) conformation "forbidden" or filtered. T0547 408 :LTH 2a40B 163 :VML T0547 413 :TK 2a40B 168 :DF T0547 416 :A 2a40B 171 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=44697 # 1ds1A.408.268 read from T0547.t2k.many.frag # found chain 1ds1A in training set T0547 408 :LTHLITKKA 1ds1A 269 :LLIVDNFRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=44698 # 1wddA.408.289 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)K415 (1wddA)M297 because T (delta_L) conformation "forbidden" or filtered. T0547 408 :LTHLITK 1wddA 290 :LLHIHRA T0547 416 :A 1wddA 298 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=44700 # 1w23A.408.203 read from T0547.t2k.many.frag # found chain 1w23A in training set T0547 408 :LTHLITKKA 1w23A 204 :TVVIVKKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44701 # 2a1xA.408.224 read from T0547.t2k.many.frag # found chain 2a1xA in template set Warning: unaligning (T0547)L411 (2a1xA)F258 because Y (epsilon') conformation "forbidden" or filtered. T0547 408 :LTH 2a1xA 255 :TVF T0547 412 :ITKKA 2a1xA 259 :HPLLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=44703 # 1jr7A.408.267 read from T0547.t2k.many.frag # found chain 1jr7A in template set T0547 408 :LTHLITKKA 1jr7A 282 :FLLINNLFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=44704 # 1y0zA.408.302 read from T0547.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)K415 (1y0zA)A310 because G (3-10) conformation "forbidden" or filtered. T0547 408 :LTHLITK 1y0zA 303 :VLLIDNW T0547 416 :A 1y0zA 311 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=44706 # 1s2oA.408.180 read from T0547.t2k.many.frag # found chain 1s2oA in training set T0547 408 :LTHLITKKA 1s2oA 181 :TLVCGDSGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=44707 # 1kaeA.408.326 read from T0547.t2k.many.frag # found chain 1kaeA in training set T0547 408 :LTHLITKKA 1kaeA 327 :HLIIQTRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44708 # 1l6rA.408.171 read from T0547.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)K414 (1l6rA)S175 because Y (epsilon') conformation "forbidden" or filtered. T0547 408 :LTHLIT 1l6rA 169 :ILVIGD T0547 415 :KA 1l6rA 176 :NN Number of specific fragments extracted= 2 number of extra gaps= 1 total=44710 # 1fyeA.408.114 read from T0547.t2k.many.frag # found chain 1fyeA in training set T0547 408 :LTHLITKKA 1fyeA 115 :LYIGWSAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44711 # 1f60A.408.274 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)I412 because of BadResidue code BAD_PEPTIDE in next template residue (1f60A)P280 Warning: unaligning (T0547)T413 because of BadResidue code BAD_PEPTIDE at template residue (1f60A)P280 Warning: unaligning (T0547)K415 (1f60A)G282 because T (delta_L) conformation "forbidden" or filtered. T0547 408 :LTHL 1f60A 275 :VVTF T0547 414 :K 1f60A 281 :A T0547 416 :A 1f60A 283 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=44714 # 1ufaA.408.260 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 408 :LTHLITKKA 1ufaA 261 :RVLARNPET Number of specific fragments extracted= 1 number of extra gaps= 0 total=44715 # 1txoA.408.181 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 408 :LTHLITKKA 1txoA 185 :RYLLCSDGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44716 # 1tffA.408.215 read from T0547.t2k.many.frag # found chain 1tffA in template set Warning: unaligning (T0547)K414 (1tffA)T222 because L (left) conformation "forbidden" or filtered. T0547 408 :LTHLIT 1tffA 216 :VYLLYK T0547 415 :KA 1tffA 223 :SH Number of specific fragments extracted= 2 number of extra gaps= 1 total=44718 # 1xjvA.408.232 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)T413 (1xjvA)S243 because L (left) conformation "forbidden" or filtered. T0547 408 :LTHLI 1xjvA 238 :FLRIY T0547 414 :KKA 1xjvA 244 :LHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=44720 # 2bwrA.408.296 read from T0547.t2k.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)K415 (2bwrA)G304 because Y (epsilon') conformation "forbidden" or filtered. T0547 408 :LTHLITK 2bwrA 297 :IIGFGDA T0547 416 :A 2bwrA 305 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=44722 # 1vjoA.408.229 read from T0547.t2k.many.frag # found chain 1vjoA in training set T0547 408 :LTHLITKKA 1vjoA 218 :SPFTMSSRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44723 # 1gttA.408.187 read from T0547.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0547)K415 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. T0547 408 :LTHLITK 1gttA 188 :RVRVLAE T0547 416 :A 1gttA 196 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=44725 # 1oxxK.408.271 read from T0547.t2k.many.frag # found chain 1oxxK in training set T0547 408 :LTHLITKKA 1oxxK 272 :AIIGIRPED Number of specific fragments extracted= 1 number of extra gaps= 0 total=44726 # 1r17A.408.70 read from T0547.t2k.many.frag # found chain 1r17A in template set T0547 408 :LTHLITKKA 1r17A 326 :TMTVNIDKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=44727 # 1ifrA.408.62 read from T0547.t2k.many.frag # found chain 1ifrA in training set T0547 408 :LTHLITKKA 1ifrA 494 :VVTIWAAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44728 # 1acc.408.587 read from T0547.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0547)A416 because of BadResidue code BAD_PEPTIDE in next template residue (1acc)H597 T0547 408 :LTHLITKK 1acc 588 :NILIRDKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=44729 # 1gci.408.190 read from T0547.t2k.many.frag # found chain 1gci in training set Warning: unaligning (T0547)L411 (1gci)A200 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1gci)N204 because L (left) conformation "forbidden" or filtered. T0547 408 :LTH 1gci 197 :DIV T0547 412 :ITK 1gci 201 :PGV T0547 416 :A 1gci 205 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=44732 # 1knwA.409.369 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I417 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. T0547 409 :THLITKKA 1knwA 370 :LVLHDTGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=44733 # 2ab0A.409.101 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)T413 (2ab0A)C106 because S (epsilon) conformation "forbidden" or filtered. T0547 409 :THLI 2ab0A 102 :VAAI T0547 414 :KKAI 2ab0A 107 :AAPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=44735 # 7odcA.409.380 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)T413 (7odcA)N385 because L (left) conformation "forbidden" or filtered. T0547 409 :THLI 7odcA 381 :MLFE T0547 414 :KKAI 7odcA 386 :MGAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=44737 # 1wddA.409.290 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)K414 (1wddA)A296 because P (beta_P) conformation "forbidden" or filtered. T0547 409 :THLIT 1wddA 291 :LHIHR T0547 415 :KAI 1wddA 297 :MHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=44739 # 1kaeA.409.327 read from T0547.t2k.many.frag # found chain 1kaeA in training set T0547 409 :THLITKKAI 1kaeA 328 :LIIQTRNAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=44740 # 2a40B.409.163 read from T0547.t2k.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)L411 (2a40B)M166 because Y (epsilon') conformation "forbidden" or filtered. T0547 409 :TH 2a40B 164 :ML T0547 412 :ITKKAI 2a40B 167 :GDFNAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=44742 # 1tffA.409.216 read from T0547.t2k.many.frag # found chain 1tffA in template set Warning: unaligning (T0547)K414 (1tffA)T222 because L (left) conformation "forbidden" or filtered. T0547 409 :THLIT 1tffA 217 :YLLYK T0547 415 :KAI 1tffA 223 :SHY Number of specific fragments extracted= 2 number of extra gaps= 1 total=44744 # 1vjoA.409.230 read from T0547.t2k.many.frag # found chain 1vjoA in training set T0547 409 :THLITKKAI 1vjoA 219 :PFTMSSRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=44745 # 1otjA.409.245 read from T0547.t2k.many.frag # found chain 1otjA in template set T0547 409 :THLITKKAI 1otjA 246 :AIWDNRVTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=44746 # 1d3yA.409.125 read from T0547.t2k.many.frag # found chain 1d3yA in template set T0547 409 :THLITKKAI 1d3yA 194 :LAIETSGMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=44747 # 1zvtA.409.46 read from T0547.t2k.many.frag # found chain 1zvtA in training set Warning: unaligning (T0547)K415 (1zvtA)T549 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1zvtA)G550 because T (delta_L) conformation "forbidden" or filtered. T0547 409 :THLITK 1zvtA 543 :VVFVDS T0547 417 :I 1zvtA 551 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=44749 # 1jr7A.409.268 read from T0547.t2k.many.frag # found chain 1jr7A in template set Warning: unaligning (T0547)H410 (1jr7A)L284 because D (zeta) conformation "forbidden" or filtered. T0547 409 :T 1jr7A 283 :L T0547 411 :LITKKAI 1jr7A 285 :INNLFWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44751 # 1i4wA.409.181 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)L411 (1i4wA)M172 because Y (epsilon') conformation "forbidden" or filtered. T0547 409 :TH 1i4wA 170 :LW T0547 412 :ITKKAI 1i4wA 173 :PSTTAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=44753 1usyA expands to /projects/compbio/data/pdb/1usy.pdb.gz 1usyA:# 1usyA.409.126 read from T0547.t2k.many.frag # adding 1usyA to template set # found chain 1usyA in template set T0547 409 :THLITKKAI 1usyA 127 :VEIGHTGVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=44754 # 1w23A.409.204 read from T0547.t2k.many.frag # found chain 1w23A in training set T0547 409 :THLITKKAI 1w23A 205 :VVIVKKDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44755 # 2d1pC.409.26 read from T0547.t2k.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)T413 (2d1pC)Q31 because S (epsilon) conformation "forbidden" or filtered. T0547 409 :THLI 2d1pC 27 :LLLL T0547 414 :KKAI 2d1pC 32 :DGVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=44757 # 1ifrA.409.63 read from T0547.t2k.many.frag # found chain 1ifrA in training set Warning: unaligning (T0547)K415 (1ifrA)G501 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I417 (1ifrA)G503 because T (delta_L) conformation "forbidden" or filtered. T0547 409 :THLITK 1ifrA 495 :VTIWAA T0547 416 :A 1ifrA 502 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=44759 # 1fyeA.409.115 read from T0547.t2k.many.frag # found chain 1fyeA in training set T0547 409 :THLITKKAI 1fyeA 116 :YIGWSAGAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=44760 # 2b0aA.409.85 read from T0547.t2k.many.frag # found chain 2b0aA in training set T0547 409 :THLITKKAI 2b0aA 86 :ILLIYTGFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=44761 # 1rx0A.409.194 read from T0547.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0547)A416 (1rx0A)T202 because P (beta_P) conformation "forbidden" or filtered. T0547 409 :THLITKK 1rx0A 195 :CIVVEKG T0547 417 :I 1rx0A 203 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=44763 # 1gttA.409.188 read from T0547.t2k.many.frag # found chain 1gttA in training set T0547 409 :THLITKKAI 1gttA 189 :VRVLAEGFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=44764 # 1ufaA.409.261 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 409 :THLITKKAI 1ufaA 262 :VLARNPETT Number of specific fragments extracted= 1 number of extra gaps= 0 total=44765 # 1f60A.409.275 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)I412 because of BadResidue code BAD_PEPTIDE in next template residue (1f60A)P280 Warning: unaligning (T0547)T413 because of BadResidue code BAD_PEPTIDE at template residue (1f60A)P280 T0547 409 :THL 1f60A 276 :VTF T0547 414 :KKAI 1f60A 281 :AGVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=44767 # 1izoA.409.313 read from T0547.t2k.many.frag # found chain 1izoA in template set T0547 409 :THLITKKAI 1izoA 314 :VLLDLYGTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=44768 # 2bwrA.409.297 read from T0547.t2k.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)K415 (2bwrA)G304 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (2bwrA)V305 because E (beta_S) conformation "forbidden" or filtered. T0547 409 :THLITK 2bwrA 298 :IGFGDA T0547 417 :I 2bwrA 306 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=44770 # 1oxxK.409.272 read from T0547.t2k.many.frag # found chain 1oxxK in training set T0547 409 :THLITKKAI 1oxxK 273 :IIGIRPEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44771 # 1gci.409.191 read from T0547.t2k.many.frag # found chain 1gci in training set Warning: unaligning (T0547)L411 (1gci)A200 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1gci)N204 because L (left) conformation "forbidden" or filtered. T0547 409 :TH 1gci 198 :IV T0547 412 :ITK 1gci 201 :PGV T0547 416 :AI 1gci 205 :VQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=44774 # 1r17A.409.71 read from T0547.t2k.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)K414 (1r17A)D332 because P (beta_P) conformation "forbidden" or filtered. T0547 409 :THLIT 1r17A 327 :MTVNI T0547 415 :KAI 1r17A 333 :KNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=44776 # 1suuA.409.60 read from T0547.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0547)A416 (1suuA)G566 because L (left) conformation "forbidden" or filtered. T0547 409 :THLITKK 1suuA 559 :LFMISNE T0547 417 :I 1suuA 567 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=44778 # 1ds1A.409.269 read from T0547.t2k.many.frag # found chain 1ds1A in training set T0547 409 :THLITKKAI 1ds1A 270 :LIVDNFRTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=44779 # 1knwA.410.370 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I417 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. T0547 410 :HLITKKA 1knwA 371 :VLHDTGA T0547 418 :L 1knwA 379 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=44781 # 2ab0A.410.102 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)T413 (2ab0A)C106 because S (epsilon) conformation "forbidden" or filtered. T0547 410 :HLI 2ab0A 103 :AAI T0547 414 :KKAIL 2ab0A 107 :AAPAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=44783 # 7odcA.410.381 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)T413 (7odcA)N385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I417 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. T0547 410 :HLI 7odcA 382 :LFE T0547 414 :KKA 7odcA 386 :MGA T0547 418 :L 7odcA 390 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=44786 # 1kaeA.410.328 read from T0547.t2k.many.frag # found chain 1kaeA in training set T0547 410 :HLITKKAIL 1kaeA 329 :IIQTRNARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=44787 # 1i4wA.410.182 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)L411 (1i4wA)M172 because Y (epsilon') conformation "forbidden" or filtered. T0547 410 :H 1i4wA 171 :W T0547 412 :ITKKAIL 1i4wA 173 :PSTTARK Number of specific fragments extracted= 2 number of extra gaps= 1 total=44789 # 1usyA.410.127 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 410 :HLITKKAIL 1usyA 128 :EIGHTGVYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=44790 # 1wddA.410.291 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)K414 (1wddA)A296 because P (beta_P) conformation "forbidden" or filtered. T0547 410 :HLIT 1wddA 292 :HIHR T0547 415 :KAIL 1wddA 297 :MHAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44792 # 1zvtA.410.47 read from T0547.t2k.many.frag # found chain 1zvtA in training set Warning: unaligning (T0547)K415 (1zvtA)T549 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1zvtA)G550 because T (delta_L) conformation "forbidden" or filtered. T0547 410 :HLITK 1zvtA 544 :VFVDS T0547 417 :IL 1zvtA 551 :RS Number of specific fragments extracted= 2 number of extra gaps= 1 total=44794 # 1vjoA.410.231 read from T0547.t2k.many.frag # found chain 1vjoA in training set T0547 410 :HLITKKAIL 1vjoA 220 :FTMSSRAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=44795 # 2a40B.410.164 read from T0547.t2k.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)K415 (2a40B)N170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I417 (2a40B)D172 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L418 (2a40B)C173 because S (epsilon) conformation "forbidden" or filtered. T0547 410 :HLITK 2a40B 165 :LMGDF T0547 416 :A 2a40B 171 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=44797 # 1jr7A.410.269 read from T0547.t2k.many.frag # found chain 1jr7A in template set T0547 410 :HLITKKAIL 1jr7A 284 :LINNLFWLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=44798 # 1pmi.410.381 read from T0547.t2k.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)L418 (1pmi)G391 because Y (epsilon') conformation "forbidden" or filtered. T0547 410 :HLITKKAI 1pmi 383 :IVIATNGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=44799 # 1otjA.410.127 read from T0547.t2k.many.frag # found chain 1otjA in template set T0547 410 :HLITKKAIL 1otjA 128 :WTSGIAAYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=44800 # 1fyeA.410.116 read from T0547.t2k.many.frag # found chain 1fyeA in training set T0547 410 :HLITKKAIL 1fyeA 117 :IGWSAGANL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44801 # 1otjA.410.246 read from T0547.t2k.many.frag # found chain 1otjA in template set Warning: unaligning (T0547)A416 (1otjA)T253 because Y (epsilon') conformation "forbidden" or filtered. T0547 410 :HLITKK 1otjA 247 :IWDNRV T0547 417 :IL 1otjA 254 :QH Number of specific fragments extracted= 2 number of extra gaps= 1 total=44803 # 1oxxK.410.273 read from T0547.t2k.many.frag # found chain 1oxxK in training set T0547 410 :HLITKKAIL 1oxxK 274 :IGIRPEDVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=44804 # 1tffA.410.217 read from T0547.t2k.many.frag # found chain 1tffA in template set Warning: unaligning (T0547)K414 (1tffA)T222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1tffA)S223 because L (left) conformation "forbidden" or filtered. T0547 410 :HLIT 1tffA 218 :LLYK T0547 416 :AIL 1tffA 224 :HYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=44806 # 1hxn.410.76 read from T0547.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)T413 (1hxn)D295 because S (epsilon) conformation "forbidden" or filtered. T0547 410 :HLI 1hxn 292 :LIQ T0547 414 :KKAIL 1hxn 296 :TKVYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44808 # 1ufaA.410.262 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 410 :HLITKKAIL 1ufaA 263 :LARNPETTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44809 # 1d3yA.410.126 read from T0547.t2k.many.frag # found chain 1d3yA in template set T0547 410 :HLITKKAIL 1d3yA 195 :AIETSGMFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44810 # 1ynpA.410.213 read from T0547.t2k.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)A416 (1ynpA)A200 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L418 (1ynpA)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 410 :HLITKK 1ynpA 194 :VVRGPV T0547 417 :I 1ynpA 201 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=44812 # 1fiqB.410.153 read from T0547.t2k.many.frag # found chain 1fiqB in template set T0547 410 :HLITKKAIL 1fiqB 373 :TIVSRGTRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=44813 1w8iA expands to /projects/compbio/data/pdb/1w8i.pdb.gz 1w8iA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1w8iA.410.2 read from T0547.t2k.many.frag # adding 1w8iA to template set # found chain 1w8iA in template set T0547 410 :HLITKKAIL 1w8iA 3 :ALIDTGIFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=44814 1wthD expands to /projects/compbio/data/pdb/1wth.pdb.gz 1wthD:# 1wthD.410.275 read from T0547.t2k.many.frag # adding 1wthD to template set # found chain 1wthD in template set Warning: unaligning (T0547)K415 (1wthD)G281 because S (epsilon) conformation "forbidden" or filtered. T0547 410 :HLITK 1wthD 276 :VVSRS T0547 416 :AIL 1wthD 282 :AYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=44816 # 1suuA.410.165 read from T0547.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0547)A416 (1suuA)G670 because T (delta_L) conformation "forbidden" or filtered. T0547 410 :HLITKK 1suuA 664 :ICLSKK T0547 417 :IL 1suuA 671 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=44818 # 1k3iA.410.363 read from T0547.t2k.many.frag # found chain 1k3iA in training set Warning: unaligning (T0547)H410 (1k3iA)Q347 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)T413 (1k3iA)P350 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (1k3iA)S351 because P (beta_P) conformation "forbidden" or filtered. T0547 411 :LI 1k3iA 348 :AG T0547 415 :KAIL 1k3iA 352 :TAMN Number of specific fragments extracted= 2 number of extra gaps= 2 total=44820 # 1rx0A.410.195 read from T0547.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0547)K414 (1rx0A)K200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L418 (1rx0A)G204 because T (delta_L) conformation "forbidden" or filtered. T0547 410 :HLIT 1rx0A 196 :IVVE T0547 415 :KAI 1rx0A 201 :GTP Number of specific fragments extracted= 2 number of extra gaps= 2 total=44822 # 2bwrA.410.298 read from T0547.t2k.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)K415 (2bwrA)G304 because Y (epsilon') conformation "forbidden" or filtered. T0547 410 :HLITK 2bwrA 299 :GFGDA T0547 416 :AIL 2bwrA 305 :VYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=44824 # 2d1pC.410.27 read from T0547.t2k.many.frag # found chain 2d1pC in template set T0547 410 :HLITKKAIL 2d1pC 28 :LLLQDGVTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44825 # 1wdpA.410.339 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)K415 (1wdpA)E345 because G (3-10) conformation "forbidden" or filtered. T0547 410 :HLITK 1wdpA 340 :NFTCL T0547 416 :AIL 1wdpA 346 :MRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=44827 # 1knwA.411.371 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I417 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. T0547 411 :LITKKA 1knwA 372 :LHDTGA T0547 418 :LL 1knwA 379 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=44829 # 7odcA.411.382 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)T413 (7odcA)N385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I417 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. T0547 411 :LI 7odcA 383 :FE T0547 414 :KKA 7odcA 386 :MGA T0547 418 :LL 7odcA 390 :TV Number of specific fragments extracted= 3 number of extra gaps= 2 total=44832 # 2ab0A.411.103 read from T0547.t2k.many.frag # found chain 2ab0A in training set T0547 411 :LITKKAILL 2ab0A 104 :AICAAPATV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44833 # 1i4wA.411.183 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)L411 (1i4wA)M172 because Y (epsilon') conformation "forbidden" or filtered. T0547 412 :ITKKAILL 1i4wA 173 :PSTTARKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=44834 # 1kaeA.411.329 read from T0547.t2k.many.frag # found chain 1kaeA in training set Warning: unaligning (T0547)K415 (1kaeA)N334 because G (3-10) conformation "forbidden" or filtered. T0547 411 :LITK 1kaeA 330 :IQTR T0547 416 :AILL 1kaeA 335 :AREL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44836 # 1usyA.411.128 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 411 :LITKKAILL 1usyA 129 :IGHTGVYED Number of specific fragments extracted= 1 number of extra gaps= 0 total=44837 # 1wddA.411.292 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)K415 (1wddA)M297 because T (delta_L) conformation "forbidden" or filtered. T0547 411 :LITK 1wddA 293 :IHRA T0547 416 :AILL 1wddA 298 :HAVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=44839 # 1otjA.411.128 read from T0547.t2k.many.frag # found chain 1otjA in template set T0547 411 :LITKKAILL 1otjA 129 :TSGIAAYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44840 # 1hxn.411.77 read from T0547.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)T413 (1hxn)D295 because S (epsilon) conformation "forbidden" or filtered. T0547 411 :LI 1hxn 293 :IQ T0547 414 :KKAILL 1hxn 296 :TKVYVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=44842 # 1vjoA.411.232 read from T0547.t2k.many.frag # found chain 1vjoA in training set T0547 411 :LITKKAILL 1vjoA 221 :TMSSRAIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=44843 1tl2A expands to /projects/compbio/data/pdb/1tl2.pdb.gz 1tl2A:# 1tl2A.411.56 read from T0547.t2k.many.frag # adding 1tl2A to template set # found chain 1tl2A in template set Warning: unaligning (T0547)T413 (1tl2A)N59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L419 (1tl2A)G65 because Y (epsilon') conformation "forbidden" or filtered. T0547 411 :LI 1tl2A 57 :VL T0547 414 :KKAIL 1tl2A 60 :DKIYK Number of specific fragments extracted= 2 number of extra gaps= 2 total=44845 # 1pmi.411.382 read from T0547.t2k.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)L418 (1pmi)G391 because Y (epsilon') conformation "forbidden" or filtered. T0547 411 :LITKKAI 1pmi 384 :VIATNGK T0547 419 :L 1pmi 392 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=44847 # 1w8iA.411.3 read from T0547.t2k.many.frag # found chain 1w8iA in template set T0547 411 :LITKKAILL 1w8iA 4 :LIDTGIFFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=44848 # 1jr7A.411.270 read from T0547.t2k.many.frag # found chain 1jr7A in template set Warning: unaligning (T0547)L419 (1jr7A)G293 because Y (epsilon') conformation "forbidden" or filtered. T0547 411 :LITKKAIL 1jr7A 285 :INNLFWLH Number of specific fragments extracted= 1 number of extra gaps= 1 total=44849 # 1k3iA.411.364 read from T0547.t2k.many.frag # found chain 1k3iA in training set Warning: unaligning (T0547)T413 (1k3iA)P350 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1k3iA)A353 because P (beta_P) conformation "forbidden" or filtered. T0547 411 :LI 1k3iA 348 :AG T0547 414 :KK 1k3iA 351 :ST T0547 417 :ILL 1k3iA 354 :MNW Number of specific fragments extracted= 3 number of extra gaps= 2 total=44852 # 2bwrA.411.299 read from T0547.t2k.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)K415 (2bwrA)G304 because Y (epsilon') conformation "forbidden" or filtered. T0547 411 :LITK 2bwrA 300 :FGDA T0547 416 :AILL 2bwrA 305 :VYVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=44854 # 1zvtA.411.48 read from T0547.t2k.many.frag # found chain 1zvtA in training set Warning: unaligning (T0547)A416 (1zvtA)G550 because T (delta_L) conformation "forbidden" or filtered. T0547 411 :LITKK 1zvtA 545 :FVDST T0547 417 :ILL 1zvtA 551 :RSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=44856 # 1suuA.411.166 read from T0547.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0547)A416 (1suuA)G670 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L419 (1suuA)F673 because Y (epsilon') conformation "forbidden" or filtered. T0547 411 :LITKK 1suuA 665 :CLSKK T0547 417 :IL 1suuA 671 :SA Number of specific fragments extracted= 2 number of extra gaps= 2 total=44858 # 1fyeA.411.117 read from T0547.t2k.many.frag # found chain 1fyeA in training set T0547 411 :LITKKAILL 1fyeA 118 :GWSAGANLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44859 # 1tffA.411.218 read from T0547.t2k.many.frag # found chain 1tffA in template set Warning: unaligning (T0547)K414 (1tffA)T222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1tffA)S223 because L (left) conformation "forbidden" or filtered. T0547 411 :LIT 1tffA 219 :LYK T0547 416 :AILL 1tffA 224 :HYNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=44861 # 1wthD.411.276 read from T0547.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0547)K415 (1wthD)G281 because S (epsilon) conformation "forbidden" or filtered. T0547 411 :LITK 1wthD 277 :VSRS T0547 416 :AILL 1wthD 282 :AYSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=44863 # 2d0oA.411.412 read from T0547.t2k.many.frag # found chain 2d0oA in template set Warning: unaligning (T0547)A416 (2d0oA)S418 because Y (epsilon') conformation "forbidden" or filtered. T0547 411 :LITKK 2d0oA 413 :DLGAG T0547 417 :ILL 2d0oA 419 :TDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=44865 # 2a40B.411.165 read from T0547.t2k.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)K415 (2a40B)N170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L418 (2a40B)C173 because S (epsilon) conformation "forbidden" or filtered. T0547 411 :LITK 2a40B 166 :MGDF T0547 416 :AI 2a40B 171 :AD T0547 419 :L 2a40B 174 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=44868 # 1uscA.411.161 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)L418 (1uscA)G169 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L419 (1uscA)R170 because Y (epsilon') conformation "forbidden" or filtered. T0547 411 :LITKKAI 1uscA 162 :YYGKGLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=44869 # 1oxxK.411.274 read from T0547.t2k.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)A416 (1oxxK)D280 because G (3-10) conformation "forbidden" or filtered. T0547 411 :LITKK 1oxxK 275 :GIRPE T0547 417 :ILL 1oxxK 281 :VKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44871 # 1otjA.411.247 read from T0547.t2k.many.frag # found chain 1otjA in template set Warning: unaligning (T0547)A416 (1otjA)T253 because Y (epsilon') conformation "forbidden" or filtered. T0547 411 :LITKK 1otjA 248 :WDNRV T0547 417 :ILL 1otjA 254 :QHY Number of specific fragments extracted= 2 number of extra gaps= 1 total=44873 # 1ufaA.411.263 read from T0547.t2k.many.frag # found chain 1ufaA in template set T0547 411 :LITKKAILL 1ufaA 264 :ARNPETTLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=44874 # 1mugA.411.105 read from T0547.t2k.many.frag # found chain 1mugA in training set T0547 411 :LITKKAILL 1mugA 106 :ILGKQAYEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=44875 # 1zx0A.411.167 read from T0547.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)L411 (1zx0A)Y168 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T413 (1zx0A)N170 because D (zeta) conformation "forbidden" or filtered. T0547 412 :I 1zx0A 169 :C T0547 414 :KKAILL 1zx0A 171 :LTSWGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=44877 # 1d3yA.411.127 read from T0547.t2k.many.frag # found chain 1d3yA in template set T0547 411 :LITKKAILL 1d3yA 196 :IETSGMFAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=44878 # 1knwA.412.372 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)T413 (1knwA)D374 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I417 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. T0547 412 :I 1knwA 373 :H T0547 414 :KKA 1knwA 375 :TGA T0547 418 :LLL 1knwA 379 :GAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=44881 # 7odcA.412.383 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)T413 (7odcA)N385 because L (left) conformation "forbidden" or filtered. T0547 412 :I 7odcA 384 :E T0547 414 :KKAILLL 7odcA 386 :MGAYTVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=44883 # 1i4wA.412.184 read from T0547.t2k.many.frag # found chain 1i4wA in template set T0547 412 :ITKKAILLL 1i4wA 173 :PSTTARKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44884 # 2ab0A.412.104 read from T0547.t2k.many.frag # found chain 2ab0A in training set T0547 412 :ITKKAILLL 2ab0A 105 :ICAAPATVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44885 # 1hxn.412.78 read from T0547.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)T413 (1hxn)D295 because S (epsilon) conformation "forbidden" or filtered. T0547 412 :I 1hxn 294 :Q T0547 414 :KKAILLL 1hxn 296 :TKVYVFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44887 # 1usyA.412.129 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 412 :ITKKAILLL 1usyA 130 :GHTGVYEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44888 # 2bwrA.412.300 read from T0547.t2k.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)A416 (2bwrA)V305 because E (beta_S) conformation "forbidden" or filtered. T0547 412 :ITKK 2bwrA 301 :GDAG T0547 417 :ILLL 2bwrA 306 :YVAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44890 # 1tl2A.412.57 read from T0547.t2k.many.frag # found chain 1tl2A in template set Warning: unaligning (T0547)T413 (1tl2A)N59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (1tl2A)D60 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1tl2A)I62 because E (beta_S) conformation "forbidden" or filtered. T0547 412 :I 1tl2A 58 :L T0547 415 :K 1tl2A 61 :K T0547 417 :ILLL 1tl2A 63 :YKGT Number of specific fragments extracted= 3 number of extra gaps= 2 total=44893 # 1otjA.412.129 read from T0547.t2k.many.frag # found chain 1otjA in template set T0547 412 :ITKKAILLL 1otjA 130 :SGIAAYEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44894 # 1k3iA.412.365 read from T0547.t2k.many.frag # found chain 1k3iA in training set Warning: unaligning (T0547)T413 (1k3iA)P350 because C (cis) conformation "forbidden" or filtered. T0547 412 :I 1k3iA 349 :G T0547 414 :KKAILLL 1k3iA 351 :STAMNWY Number of specific fragments extracted= 2 number of extra gaps= 1 total=44896 # 1kaeA.412.330 read from T0547.t2k.many.frag # found chain 1kaeA in training set T0547 412 :ITKKAILLL 1kaeA 331 :QTRNARELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=44897 # 1w8iA.412.4 read from T0547.t2k.many.frag # found chain 1w8iA in template set T0547 412 :ITKKAILLL 1w8iA 5 :IDTGIFFGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=44898 # 1pmi.412.383 read from T0547.t2k.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)L418 (1pmi)G391 because Y (epsilon') conformation "forbidden" or filtered. T0547 412 :ITKKAI 1pmi 385 :IATNGK T0547 419 :LL 1pmi 392 :TI Number of specific fragments extracted= 2 number of extra gaps= 1 total=44900 # 1wrvA.412.201 read from T0547.t2k.many.frag # found chain 1wrvA in training set Warning: unaligning (T0547)K414 (1wrvA)D204 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1wrvA)G205 because T (delta_L) conformation "forbidden" or filtered. T0547 412 :IT 1wrvA 202 :VR T0547 416 :AILLL 1wrvA 206 :VIYAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44902 # 1uscA.412.162 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)T413 (1uscA)G164 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (1uscA)K165 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1uscA)G166 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L419 (1uscA)R170 because Y (epsilon') conformation "forbidden" or filtered. T0547 412 :I 1uscA 163 :Y T0547 416 :AIL 1uscA 167 :LYG T0547 420 :L 1uscA 171 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=44905 # 1wddA.412.293 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)K415 (1wddA)M297 because T (delta_L) conformation "forbidden" or filtered. T0547 412 :ITK 1wddA 294 :HRA T0547 416 :AILLL 1wddA 298 :HAVID Number of specific fragments extracted= 2 number of extra gaps= 1 total=44907 # 1jr7A.412.271 read from T0547.t2k.many.frag # found chain 1jr7A in template set T0547 412 :ITKKAILLL 1jr7A 286 :NNLFWLHGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=44908 # 2d0oA.412.413 read from T0547.t2k.many.frag # found chain 2d0oA in template set T0547 412 :ITKKAILLL 2d0oA 414 :LGAGSTDAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=44909 # 1r5mA.412.265 read from T0547.t2k.many.frag # found chain 1r5mA in training set T0547 412 :ITKKAILLL 1r5mA 378 :SDDGTLRIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=44910 # 2cx1A.412.60 read from T0547.t2k.many.frag # found chain 2cx1A in training set Warning: unaligning (T0547)T413 (2cx1A)V61 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (2cx1A)D62 because L (left) conformation "forbidden" or filtered. T0547 412 :I 2cx1A 60 :T T0547 415 :KAILLL 2cx1A 63 :GVPCLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=44912 # 1oxxK.412.275 read from T0547.t2k.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)L420 (1oxxK)S284 because Y (epsilon') conformation "forbidden" or filtered. T0547 412 :ITKKAILL 1oxxK 276 :IRPEDVKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=44913 # 1wthD.412.277 read from T0547.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0547)K414 (1wthD)S280 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1wthD)G281 because S (epsilon) conformation "forbidden" or filtered. T0547 412 :IT 1wthD 278 :SR T0547 416 :AILLL 1wthD 282 :AYSEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=44915 # 1mugA.412.106 read from T0547.t2k.many.frag # found chain 1mugA in training set T0547 412 :ITKKAILLL 1mugA 107 :LGKQAYEQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=44916 # 1vjoA.412.233 read from T0547.t2k.many.frag # found chain 1vjoA in training set T0547 412 :ITKKAILLL 1vjoA 222 :MSSRAIEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44917 2biwA expands to /projects/compbio/data/pdb/2biw.pdb.gz 2biwA:# 2biwA.412.148 read from T0547.t2k.many.frag # adding 2biwA to template set # found chain 2biwA in template set Warning: unaligning (T0547)K415 (2biwA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0547 412 :ITK 2biwA 149 :WEG T0547 416 :AILLL 2biwA 153 :QPHRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44919 # 1fyeA.412.118 read from T0547.t2k.many.frag # found chain 1fyeA in training set T0547 412 :ITKKAILLL 1fyeA 119 :WSAGANLAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=44920 # 1tffA.412.219 read from T0547.t2k.many.frag # found chain 1tffA in template set Warning: unaligning (T0547)K414 (1tffA)T222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1tffA)S223 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1tffA)H224 because E (beta_S) conformation "forbidden" or filtered. T0547 412 :IT 1tffA 220 :YK T0547 417 :ILLL 1tffA 225 :YNIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44922 # 1suuA.412.167 read from T0547.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0547)A416 (1suuA)G670 because T (delta_L) conformation "forbidden" or filtered. T0547 412 :ITKK 1suuA 666 :LSKK T0547 417 :ILLL 1suuA 671 :SAFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=44924 # 1zx0A.412.168 read from T0547.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)I412 (1zx0A)C169 because Y (epsilon') conformation "forbidden" or filtered. T0547 413 :TKKAILLL 1zx0A 170 :NLTSWGEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=44925 # 1ui0A.412.152 read from T0547.t2k.many.frag # found chain 1ui0A in training set T0547 412 :ITKKAILLL 1ui0A 153 :MFHPAYLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=44926 # 1knwA.413.373 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)T413 (1knwA)D374 because L (left) conformation "forbidden" or filtered. T0547 414 :KKAILLLG 1knwA 375 :TGAYGASM Number of specific fragments extracted= 1 number of extra gaps= 1 total=44927 # 7odcA.413.384 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)T413 (7odcA)N385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I417 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. T0547 414 :KKA 7odcA 386 :MGA T0547 418 :LLLG 7odcA 390 :TVAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=44929 # 1i4wA.413.185 read from T0547.t2k.many.frag # found chain 1i4wA in template set T0547 413 :TKKAILLLG 1i4wA 174 :STTARKLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=44930 # 2ab0A.413.105 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)T413 (2ab0A)C106 because S (epsilon) conformation "forbidden" or filtered. T0547 414 :KKAILLLG 2ab0A 107 :AAPATVLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=44931 # 1hxn.413.79 read from T0547.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)A416 (1hxn)V298 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1hxn)T303 because G (3-10) conformation "forbidden" or filtered. T0547 413 :TKK 1hxn 295 :DTK T0547 417 :ILLL 1hxn 299 :YVFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=44933 # 1otjA.413.130 read from T0547.t2k.many.frag # found chain 1otjA in template set T0547 413 :TKKAILLLG 1otjA 131 :GIAAYEALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=44934 # 1k3iA.413.366 read from T0547.t2k.many.frag # found chain 1k3iA in training set Warning: unaligning (T0547)T413 (1k3iA)P350 because C (cis) conformation "forbidden" or filtered. T0547 414 :KKAILLLG 1k3iA 351 :STAMNWYY Number of specific fragments extracted= 1 number of extra gaps= 1 total=44935 # 1tl2A.413.58 read from T0547.t2k.many.frag # found chain 1tl2A in template set Warning: unaligning (T0547)T413 (1tl2A)N59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L419 (1tl2A)G65 because Y (epsilon') conformation "forbidden" or filtered. T0547 414 :KKAIL 1tl2A 60 :DKIYK T0547 420 :LG 1tl2A 66 :TP Number of specific fragments extracted= 2 number of extra gaps= 2 total=44937 # 2bwrA.413.301 read from T0547.t2k.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)K415 (2bwrA)G304 because Y (epsilon') conformation "forbidden" or filtered. T0547 413 :TK 2bwrA 302 :DA T0547 416 :AILLLG 2bwrA 305 :VYVALN Number of specific fragments extracted= 2 number of extra gaps= 1 total=44939 # 1wrvA.413.202 read from T0547.t2k.many.frag # found chain 1wrvA in training set Warning: unaligning (T0547)K414 (1wrvA)D204 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1wrvA)E211 because P (beta_P) conformation "forbidden" or filtered. T0547 413 :T 1wrvA 203 :R T0547 415 :KAILLL 1wrvA 205 :GVIYAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=44941 # 1usyA.413.130 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 413 :TKKAILLLG 1usyA 131 :HTGVYEDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=44942 # 1w8iA.413.5 read from T0547.t2k.many.frag # found chain 1w8iA in template set T0547 413 :TKKAILLLG 1w8iA 6 :DTGIFFGFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=44943 # 1kaeA.413.331 read from T0547.t2k.many.frag # found chain 1kaeA in training set T0547 413 :TKKAILLLG 1kaeA 332 :TRNARELVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=44944 # 1pmi.413.384 read from T0547.t2k.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)K415 (1pmi)N388 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1pmi)G389 because S (epsilon) conformation "forbidden" or filtered. T0547 413 :TK 1pmi 386 :AT T0547 417 :ILLLG 1pmi 390 :KGTIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=44946 # 2biwA.413.149 read from T0547.t2k.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)K415 (2biwA)G152 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (2biwA)E158 because P (beta_P) conformation "forbidden" or filtered. T0547 413 :TK 2biwA 150 :EG T0547 416 :AILLL 2biwA 153 :QPHRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=44948 # 2cx1A.413.61 read from T0547.t2k.many.frag # found chain 2cx1A in training set Warning: unaligning (T0547)K414 (2cx1A)D62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (2cx1A)V64 because P (beta_P) conformation "forbidden" or filtered. T0547 413 :T 2cx1A 61 :V T0547 415 :K 2cx1A 63 :G T0547 417 :ILLLG 2cx1A 65 :PCLFE Number of specific fragments extracted= 3 number of extra gaps= 2 total=44951 # 1uscA.413.163 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)L418 (1uscA)G169 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1uscA)A172 because P (beta_P) conformation "forbidden" or filtered. T0547 413 :TKKAI 1uscA 164 :GKGLY T0547 419 :LL 1uscA 170 :RP Number of specific fragments extracted= 2 number of extra gaps= 2 total=44953 # 1utcA.413.123 read from T0547.t2k.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)K415 (1utcA)A126 because Y (epsilon') conformation "forbidden" or filtered. T0547 413 :TK 1utcA 124 :DN T0547 416 :AILLLG 1utcA 127 :VYHWSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=44955 # 1mugA.413.107 read from T0547.t2k.many.frag # found chain 1mugA in training set Warning: unaligning (T0547)G421 (1mugA)F116 because G (3-10) conformation "forbidden" or filtered. T0547 413 :TKKAILLL 1mugA 108 :GKQAYEQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=44956 # 1oxxK.413.276 read from T0547.t2k.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)L420 (1oxxK)S284 because Y (epsilon') conformation "forbidden" or filtered. T0547 413 :TKKAILL 1oxxK 277 :RPEDVKL T0547 421 :G 1oxxK 285 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=44958 # 1wthD.413.278 read from T0547.t2k.many.frag # found chain 1wthD in template set T0547 413 :TKKAILLLG 1wthD 279 :RSGAYSEMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=44959 # 1xcrA.413.211 read from T0547.t2k.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)K414 (1xcrA)G212 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)L418 (1xcrA)S216 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1xcrA)M219 because P (beta_P) conformation "forbidden" or filtered. T0547 413 :T 1xcrA 211 :K T0547 415 :KAI 1xcrA 213 :KVK T0547 419 :LL 1xcrA 217 :HI Number of specific fragments extracted= 3 number of extra gaps= 3 total=44962 1umhA expands to /projects/compbio/data/pdb/1umh.pdb.gz 1umhA:# 1umhA.413.157 read from T0547.t2k.many.frag # adding 1umhA to template set # found chain 1umhA in template set Warning: unaligning (T0547)K414 (1umhA)H272 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1umhA)G273 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1umhA)G274 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I417 (1umhA)Q275 because Y (epsilon') conformation "forbidden" or filtered. T0547 413 :T 1umhA 271 :E T0547 418 :LLLG 1umhA 276 :DSVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=44964 # 1ui0A.413.153 read from T0547.t2k.many.frag # found chain 1ui0A in training set Warning: unaligning (T0547)K414 (1ui0A)H155 because P (beta_P) conformation "forbidden" or filtered. T0547 413 :T 1ui0A 154 :F T0547 415 :KAILLLG 1ui0A 156 :PAYLLRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=44966 # 1r5mA.413.266 read from T0547.t2k.many.frag # found chain 1r5mA in training set Warning: unaligning (T0547)K415 (1r5mA)G381 because T (delta_L) conformation "forbidden" or filtered. T0547 413 :TK 1r5mA 379 :DD T0547 416 :AILLLG 1r5mA 382 :TLRIWH Number of specific fragments extracted= 2 number of extra gaps= 1 total=44968 # 1j31A.413.103 read from T0547.t2k.many.frag # found chain 1j31A in training set Warning: unaligning (T0547)K414 (1j31A)R105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1j31A)G106 because S (epsilon) conformation "forbidden" or filtered. T0547 413 :T 1j31A 104 :P T0547 416 :AILLLG 1j31A 107 :YIGKYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=44970 # 1jr7A.413.272 read from T0547.t2k.many.frag # found chain 1jr7A in template set Warning: unaligning (T0547)G421 (1jr7A)D295 because P (beta_P) conformation "forbidden" or filtered. T0547 413 :TKKAILLL 1jr7A 287 :NLFWLHGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=44971 # 1w6sA.413.69 read from T0547.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)K415 (1w6sA)P72 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1w6sA)N73 because L (left) conformation "forbidden" or filtered. T0547 413 :TK 1w6sA 70 :SF T0547 417 :ILLLG 1w6sA 74 :NTFAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=44973 # 1vqoN.413.119 read from T0547.t2k.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)L420 (1vqoN)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1vqoN)L127 because P (beta_P) conformation "forbidden" or filtered. T0547 413 :TKKAILL 1vqoN 119 :QEGAIDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=44974 # 2d0oA.413.414 read from T0547.t2k.many.frag # found chain 2d0oA in template set Warning: unaligning (T0547)A416 (2d0oA)S418 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L420 (2d0oA)S422 because Y (epsilon') conformation "forbidden" or filtered. T0547 413 :TKK 2d0oA 415 :GAG T0547 417 :ILL 2d0oA 419 :TDA T0547 421 :G 2d0oA 423 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=44977 # 1knwA.414.374 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G421 (1knwA)M382 because G (3-10) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1knwA 375 :TGAYGAS T0547 422 :D 1knwA 383 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=44979 # 7odcA.414.385 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I417 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (7odcA)A393 because G (3-10) conformation "forbidden" or filtered. T0547 414 :KKA 7odcA 386 :MGA T0547 418 :LLL 7odcA 390 :TVA T0547 422 :D 7odcA 394 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=44982 # 1i4wA.414.186 read from T0547.t2k.many.frag # found chain 1i4wA in template set T0547 414 :KKAILLLGD 1i4wA 175 :TTARKLLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=44983 # 1hxn.414.80 read from T0547.t2k.many.frag # found chain 1hxn in training set T0547 414 :KKAILLLGD 1hxn 296 :TKVYVFLTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=44984 # 2ab0A.414.106 read from T0547.t2k.many.frag # found chain 2ab0A in training set T0547 414 :KKAILLLGD 2ab0A 107 :AAPATVLVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=44985 # 1tl2A.414.59 read from T0547.t2k.many.frag # found chain 1tl2A in template set Warning: unaligning (T0547)K414 (1tl2A)D60 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L419 (1tl2A)G65 because Y (epsilon') conformation "forbidden" or filtered. T0547 415 :KAIL 1tl2A 61 :KIYK T0547 420 :LGD 1tl2A 66 :TPP Number of specific fragments extracted= 2 number of extra gaps= 2 total=44987 # 1xcrA.414.212 read from T0547.t2k.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)K414 (1xcrA)G212 because S (epsilon) conformation "forbidden" or filtered. T0547 415 :KAILLLGD 1xcrA 213 :KVKSHIMP Number of specific fragments extracted= 1 number of extra gaps= 1 total=44988 # 2bwrA.414.302 read from T0547.t2k.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)G421 (2bwrA)N310 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KKAILLL 2bwrA 303 :AGVYVAL T0547 422 :D 2bwrA 311 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=44990 # 1k3iA.414.367 read from T0547.t2k.many.frag # found chain 1k3iA in training set Warning: unaligning (T0547)A416 (1k3iA)A353 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KK 1k3iA 351 :ST T0547 417 :ILLLGD 1k3iA 354 :MNWYYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=44992 # 1utcA.414.124 read from T0547.t2k.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)K415 (1utcA)A126 because Y (epsilon') conformation "forbidden" or filtered. T0547 414 :K 1utcA 125 :N T0547 416 :AILLLGD 1utcA 127 :VYHWSME Number of specific fragments extracted= 2 number of extra gaps= 1 total=44994 # 1ui0A.414.154 read from T0547.t2k.many.frag # found chain 1ui0A in training set Warning: unaligning (T0547)G421 (1ui0A)N162 because D (zeta) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1ui0A 155 :HPAYLLR T0547 422 :D 1ui0A 163 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=44996 # 1pmi.414.385 read from T0547.t2k.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)A416 (1pmi)G389 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1pmi)I395 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KK 1pmi 387 :TN T0547 417 :ILLLG 1pmi 390 :KGTIQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=44998 # 1umhA.414.158 read from T0547.t2k.many.frag # found chain 1umhA in template set Warning: unaligning (T0547)K414 (1umhA)H272 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1umhA)G273 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1umhA)G274 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I417 (1umhA)Q275 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1umhA)W280 because E (beta_S) conformation "forbidden" or filtered. T0547 418 :LLLG 1umhA 276 :DSVY Number of specific fragments extracted= 1 number of extra gaps= 2 total=44999 # 1wrvA.414.203 read from T0547.t2k.many.frag # found chain 1wrvA in training set Warning: unaligning (T0547)K415 (1wrvA)G205 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1wrvA)E211 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :K 1wrvA 204 :D T0547 416 :AILLL 1wrvA 206 :VIYAL T0547 422 :D 1wrvA 212 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=45002 # 2cx1A.414.62 read from T0547.t2k.many.frag # found chain 2cx1A in training set Warning: unaligning (T0547)K414 (2cx1A)D62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (2cx1A)E69 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLL 2cx1A 63 :GVPCLF T0547 422 :D 2cx1A 70 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=45004 # 1otjA.414.131 read from T0547.t2k.many.frag # found chain 1otjA in template set T0547 414 :KKAILLLGD 1otjA 132 :IAAYEALSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=45005 # 1w6sA.414.70 read from T0547.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)K415 (1w6sA)P72 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1w6sA)N73 because L (left) conformation "forbidden" or filtered. T0547 414 :K 1w6sA 71 :F T0547 417 :ILLLGD 1w6sA 74 :NTFALG Number of specific fragments extracted= 2 number of extra gaps= 1 total=45007 # 1w8iA.414.6 read from T0547.t2k.many.frag # found chain 1w8iA in template set T0547 414 :KKAILLLGD 1w8iA 7 :TGIFFGFYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45008 # 1j31A.414.104 read from T0547.t2k.many.frag # found chain 1j31A in training set Warning: unaligning (T0547)K415 (1j31A)G106 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)L418 (1j31A)G109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1j31A)R112 because E (beta_S) conformation "forbidden" or filtered. T0547 414 :K 1j31A 105 :R T0547 416 :AI 1j31A 107 :YI T0547 419 :LL 1j31A 110 :KY T0547 422 :D 1j31A 113 :K Number of specific fragments extracted= 4 number of extra gaps= 3 total=45012 # 1zx0A.414.170 read from T0547.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)G421 (1zx0A)M178 because G (3-10) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1zx0A 171 :LTSWGEL T0547 422 :D 1zx0A 179 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=45014 # 1wthD.414.279 read from T0547.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0547)D422 (1wthD)Y288 because E (beta_S) conformation "forbidden" or filtered. T0547 414 :KKAILLLG 1wthD 280 :SGAYSEMT Number of specific fragments extracted= 1 number of extra gaps= 1 total=45015 # 2biwA.414.150 read from T0547.t2k.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)K415 (2biwA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0547 414 :K 2biwA 151 :G T0547 416 :AILLLGD 2biwA 153 :QPHRLEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=45017 # 1jr7A.414.273 read from T0547.t2k.many.frag # found chain 1jr7A in template set Warning: unaligning (T0547)L419 (1jr7A)G293 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1jr7A)R296 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KKAIL 1jr7A 288 :LFWLH T0547 420 :LG 1jr7A 294 :RD Number of specific fragments extracted= 2 number of extra gaps= 2 total=45019 # 1oxxK.414.277 read from T0547.t2k.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)L420 (1oxxK)S284 because Y (epsilon') conformation "forbidden" or filtered. T0547 414 :KKAILL 1oxxK 278 :PEDVKL T0547 421 :GD 1oxxK 285 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=45021 # 1uscA.414.164 read from T0547.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)L418 (1uscA)G169 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L419 (1uscA)R170 because Y (epsilon') conformation "forbidden" or filtered. T0547 414 :KKAI 1uscA 165 :KGLY T0547 420 :LGD 1uscA 171 :PAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=45023 # 1zx8A.414.83 read from T0547.t2k.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)K415 (1zx8A)K73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1zx8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0547 414 :K 1zx8A 72 :G T0547 416 :AILLLG 1zx8A 74 :ALCLFF Number of specific fragments extracted= 2 number of extra gaps= 2 total=45025 # 1zn6A.414.110 read from T0547.t2k.many.frag # found chain 1zn6A in training set Warning: unaligning (T0547)K415 (1zn6A)A112 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1zn6A)W118 because G (3-10) conformation "forbidden" or filtered. T0547 414 :K 1zn6A 111 :D T0547 416 :AILLL 1zn6A 113 :IYEPD T0547 422 :D 1zn6A 119 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=45028 # 1mugA.414.108 read from T0547.t2k.many.frag # found chain 1mugA in training set Warning: unaligning (T0547)G421 (1mugA)F116 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1mugA)S117 because L (left) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1mugA 109 :KQAYEQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=45029 # 2d1pC.414.31 read from T0547.t2k.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)G421 (2d1pC)D39 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KKAILLL 2d1pC 32 :DGVTAAV T0547 422 :D 2d1pC 40 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=45031 1p5tA expands to /projects/compbio/data/pdb/1p5t.pdb.gz 1p5tA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 702, because occupancy 0.500 <= existing 0.500 in 1p5tA Skipped atom 704, because occupancy 0.500 <= existing 0.500 in 1p5tA Skipped atom 706, because occupancy 0.500 <= existing 0.500 in 1p5tA Skipped atom 708, because occupancy 0.500 <= existing 0.500 in 1p5tA Skipped atom 710, because occupancy 0.500 <= existing 0.500 in 1p5tA Skipped atom 712, because occupancy 0.500 <= existing 0.500 in 1p5tA Skipped atom 714, because occupancy 0.500 <= existing 0.500 in 1p5tA Skipped atom 716, because occupancy 0.500 <= existing 0.500 in 1p5tA # 1p5tA.414.32 read from T0547.t2k.many.frag # adding 1p5tA to template set # found chain 1p5tA in template set Warning: unaligning (T0547)A416 (1p5tA)K35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1p5tA)T40 because E (beta_S) conformation "forbidden" or filtered. T0547 414 :KK 1p5tA 33 :AE T0547 417 :ILLL 1p5tA 36 :LTLL T0547 422 :D 1p5tA 41 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=45034 # 1knwA.415.375 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)D422 (1knwA)S383 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLLG 1knwA 376 :GAYGASM T0547 423 :K 1knwA 384 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=45036 # 1i4wA.415.187 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)G421 (1i4wA)A182 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLL 1i4wA 176 :TARKLL T0547 422 :DK 1i4wA 183 :RP Number of specific fragments extracted= 2 number of extra gaps= 1 total=45038 # 7odcA.415.386 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I417 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (7odcA)A393 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (7odcA)S395 because E (beta_S) conformation "forbidden" or filtered. T0547 415 :KA 7odcA 387 :GA T0547 418 :LLL 7odcA 390 :TVA T0547 422 :D 7odcA 394 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=45041 # 2ab0A.415.107 read from T0547.t2k.many.frag # found chain 2ab0A in training set T0547 415 :KAILLLGDK 2ab0A 108 :APATVLVPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=45042 # 1hxn.415.81 read from T0547.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)G421 (1hxn)T303 because G (3-10) conformation "forbidden" or filtered. T0547 415 :KAILLL 1hxn 297 :KVYVFL T0547 422 :DK 1hxn 304 :KG Number of specific fragments extracted= 2 number of extra gaps= 1 total=45044 # 1xcrA.415.213 read from T0547.t2k.many.frag # found chain 1xcrA in training set T0547 415 :KAILLLGDK 1xcrA 213 :KVKSHIMPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45045 # 1tl2A.415.60 read from T0547.t2k.many.frag # found chain 1tl2A in template set Warning: unaligning (T0547)G421 (1tl2A)P67 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLL 1tl2A 61 :KIYKGT T0547 422 :DK 1tl2A 68 :PT Number of specific fragments extracted= 2 number of extra gaps= 1 total=45047 # 1ui0A.415.155 read from T0547.t2k.many.frag # found chain 1ui0A in training set T0547 415 :KAILLLGDK 1ui0A 156 :PAYLLRNPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45048 # 1utcA.415.125 read from T0547.t2k.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)K415 (1utcA)A126 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1utcA)G134 because S (epsilon) conformation "forbidden" or filtered. T0547 416 :AILLLGD 1utcA 127 :VYHWSME Number of specific fragments extracted= 1 number of extra gaps= 2 total=45049 # 1umhA.415.159 read from T0547.t2k.many.frag # found chain 1umhA in template set Warning: unaligning (T0547)K415 (1umhA)G273 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1umhA)G274 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I417 (1umhA)Q275 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1umhA)K281 because P (beta_P) conformation "forbidden" or filtered. T0547 418 :LLLGD 1umhA 276 :DSVYW Number of specific fragments extracted= 1 number of extra gaps= 2 total=45050 # 1wrvA.415.204 read from T0547.t2k.many.frag # found chain 1wrvA in training set Warning: unaligning (T0547)K415 (1wrvA)G205 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1wrvA)V206 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLLGDK 1wrvA 207 :IYALEHS Number of specific fragments extracted= 1 number of extra gaps= 1 total=45051 # 1pmi.415.386 read from T0547.t2k.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)L418 (1pmi)G391 because Y (epsilon') conformation "forbidden" or filtered. T0547 415 :KAI 1pmi 388 :NGK T0547 419 :LLGDK 1pmi 392 :TIQIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=45053 # 2bwrA.415.303 read from T0547.t2k.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)K415 (2bwrA)G304 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (2bwrA)V305 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (2bwrA)G312 because T (delta_L) conformation "forbidden" or filtered. T0547 417 :ILLLGD 2bwrA 306 :YVALNN Number of specific fragments extracted= 1 number of extra gaps= 2 total=45054 # 2cx1A.415.63 read from T0547.t2k.many.frag # found chain 2cx1A in training set Warning: unaligning (T0547)K415 (2cx1A)G63 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (2cx1A)W70 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AILLLG 2cx1A 64 :VPCLFE T0547 423 :K 2cx1A 71 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=45056 # 1k3iA.415.368 read from T0547.t2k.many.frag # found chain 1k3iA in training set Warning: unaligning (T0547)G421 (1k3iA)Y358 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1k3iA)S360 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLL 1k3iA 352 :TAMNWY T0547 422 :D 1k3iA 359 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=45058 # 1j31A.415.105 read from T0547.t2k.many.frag # found chain 1j31A in training set Warning: unaligning (T0547)L418 (1j31A)G109 because Y (epsilon') conformation "forbidden" or filtered. T0547 415 :KAI 1j31A 106 :GYI T0547 419 :LLGDK 1j31A 110 :KYRKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=45060 # 1w6sA.415.71 read from T0547.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)K415 (1w6sA)P72 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1w6sA)L78 because E (beta_S) conformation "forbidden" or filtered. T0547 416 :AILLL 1w6sA 73 :NNTFA T0547 422 :DK 1w6sA 79 :GL Number of specific fragments extracted= 2 number of extra gaps= 2 total=45062 # 1zx0A.415.171 read from T0547.t2k.many.frag # found chain 1zx0A in template set T0547 415 :KAILLLGDK 1zx0A 172 :TSWGELMKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45063 # 2biwA.415.151 read from T0547.t2k.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)K415 (2biwA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0547 416 :AILLLGDK 2biwA 153 :QPHRLEPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=45064 # 1jr7A.415.274 read from T0547.t2k.many.frag # found chain 1jr7A in template set Warning: unaligning (T0547)L419 (1jr7A)G293 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1jr7A)D295 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAIL 1jr7A 289 :FWLH T0547 420 :L 1jr7A 294 :R T0547 422 :DK 1jr7A 296 :RF Number of specific fragments extracted= 3 number of extra gaps= 2 total=45067 # 1oxxK.415.278 read from T0547.t2k.many.frag # found chain 1oxxK in training set T0547 415 :KAILLLGDK 1oxxK 279 :EDVKLSKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=45068 2bgcA expands to /projects/compbio/data/pdb/2bgc.pdb.gz 2bgcA:# 2bgcA.415.44 read from T0547.t2k.many.frag # adding 2bgcA to template set # found chain 2bgcA in template set Warning: unaligning (T0547)K415 (2bgcA)G44 because S (epsilon) conformation "forbidden" or filtered. T0547 416 :AILLLGDK 2bgcA 45 :ITKLTSIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=45069 # 1w8iA.415.7 read from T0547.t2k.many.frag # found chain 1w8iA in template set T0547 415 :KAILLLGDK 1w8iA 8 :GIFFGFYSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45070 # 2d1pC.415.32 read from T0547.t2k.many.frag # found chain 2d1pC in template set T0547 415 :KAILLLGDK 2d1pC 33 :GVTAAVDGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45071 # 1zx8A.415.84 read from T0547.t2k.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)G421 (1zx8A)F79 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1zx8A)G80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1zx8A)K81 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLL 1zx8A 73 :KALCLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=45072 2ae5B expands to /projects/compbio/data/pdb/2ae5.pdb.gz 2ae5B:# 2ae5B.415.349 read from T0547.t2k.many.frag # adding 2ae5B to template set # found chain 2ae5B in template set Warning: unaligning (T0547)G421 (2ae5B)A356 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (2ae5B)G357 because S (epsilon) conformation "forbidden" or filtered. T0547 415 :KAILLL 2ae5B 350 :EWARLF T0547 423 :K 2ae5B 358 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=45074 # 1wthD.415.280 read from T0547.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0547)K415 (1wthD)G281 because S (epsilon) conformation "forbidden" or filtered. T0547 416 :AILLLGDK 1wthD 282 :AYSEMTYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=45075 # 1p5tA.415.33 read from T0547.t2k.many.frag # found chain 1p5tA in template set Warning: unaligning (T0547)D422 (1p5tA)L41 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1p5tA)G42 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLLG 1p5tA 34 :EKLTLLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=45076 # 1wvhA.415.48 read from T0547.t2k.many.frag # found chain 1wvhA in training set Warning: unaligning (T0547)A416 (1wvhA)G1654 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1wvhA)D1659 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :K 1wvhA 1653 :Q T0547 417 :ILLL 1wvhA 1655 :ITLT T0547 422 :DK 1wvhA 1660 :NQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=45079 # 3nul.415.27 read from T0547.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0547)A416 (3nul)G30 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (3nul)S36 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :K 3nul 29 :D T0547 417 :ILLLG 3nul 31 :SVWAQ T0547 423 :K 3nul 37 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=45082 # 1knwA.416.376 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G421 (1knwA)M382 because G (3-10) conformation "forbidden" or filtered. T0547 416 :AILLL 1knwA 377 :AYGAS T0547 422 :DKQ 1knwA 383 :SSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=45084 # 1xcrA.416.214 read from T0547.t2k.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)L418 (1xcrA)S216 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1xcrA)M219 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AI 1xcrA 214 :VK T0547 419 :LL 1xcrA 217 :HI T0547 422 :DKQ 1xcrA 220 :PAE Number of specific fragments extracted= 3 number of extra gaps= 2 total=45087 # 1i4wA.416.188 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)G421 (1i4wA)A182 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AILLL 1i4wA 177 :ARKLL T0547 422 :DKQ 1i4wA 183 :RPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=45089 # 7odcA.416.387 read from T0547.t2k.many.frag # found chain 7odcA in training set T0547 416 :AILLLGDKQ 7odcA 388 :AYTVAAAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=45090 # 2ab0A.416.108 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)Q424 (2ab0A)D117 because L (left) conformation "forbidden" or filtered. T0547 416 :AILLLGDK 2ab0A 109 :PATVLVPH Number of specific fragments extracted= 1 number of extra gaps= 1 total=45091 # 1ui0A.416.156 read from T0547.t2k.many.frag # found chain 1ui0A in training set Warning: unaligning (T0547)G421 (1ui0A)N162 because D (zeta) conformation "forbidden" or filtered. T0547 416 :AILLL 1ui0A 157 :AYLLR T0547 422 :DKQ 1ui0A 163 :PSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=45093 # 1tl2A.416.61 read from T0547.t2k.many.frag # found chain 1tl2A in template set Warning: unaligning (T0547)L419 (1tl2A)G65 because Y (epsilon') conformation "forbidden" or filtered. T0547 416 :AIL 1tl2A 62 :IYK T0547 420 :LGDKQ 1tl2A 66 :TPPTH Number of specific fragments extracted= 2 number of extra gaps= 1 total=45095 # 1hxn.416.82 read from T0547.t2k.many.frag # found chain 1hxn in training set T0547 416 :AILLLGDKQ 1hxn 298 :VYVFLTKGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=45096 # 1utcA.416.126 read from T0547.t2k.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)K423 (1utcA)G134 because S (epsilon) conformation "forbidden" or filtered. T0547 416 :AILLLGD 1utcA 127 :VYHWSME T0547 424 :Q 1utcA 135 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=45098 # 1pmi.416.387 read from T0547.t2k.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)A416 (1pmi)G389 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1pmi)Q394 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1pmi)G397 because T (delta_L) conformation "forbidden" or filtered. T0547 417 :ILLL 1pmi 390 :KGTI T0547 422 :DK 1pmi 395 :IT Number of specific fragments extracted= 2 number of extra gaps= 3 total=45100 # 2bgcA.416.45 read from T0547.t2k.many.frag # found chain 2bgcA in template set Warning: unaligning (T0547)D422 (2bgcA)I51 because E (beta_S) conformation "forbidden" or filtered. T0547 416 :AILLLG 2bgcA 45 :ITKLTS T0547 423 :KQ 2bgcA 52 :SE Number of specific fragments extracted= 2 number of extra gaps= 1 total=45102 # 1k3iA.416.369 read from T0547.t2k.many.frag # found chain 1k3iA in training set Warning: unaligning (T0547)Q424 (1k3iA)G361 because S (epsilon) conformation "forbidden" or filtered. T0547 416 :AILLLGDK 1k3iA 353 :AMNWYYTS Number of specific fragments extracted= 1 number of extra gaps= 1 total=45103 # 2cx1A.416.64 read from T0547.t2k.many.frag # found chain 2cx1A in training set Warning: unaligning (T0547)G421 (2cx1A)E69 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AILLL 2cx1A 64 :VPCLF T0547 422 :DKQ 2cx1A 70 :WSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=45105 # 1wrvA.416.205 read from T0547.t2k.many.frag # found chain 1wrvA in training set Warning: unaligning (T0547)G421 (1wrvA)E211 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1wrvA)S213 because S (epsilon) conformation "forbidden" or filtered. T0547 416 :AILLL 1wrvA 206 :VIYAL T0547 422 :D 1wrvA 212 :H T0547 424 :Q 1wrvA 214 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=45108 # 1umhA.416.160 read from T0547.t2k.many.frag # found chain 1umhA in template set Warning: unaligning (T0547)A416 (1umhA)G274 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I417 (1umhA)Q275 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1umhA)W280 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1umhA)K281 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1umhA)G282 because S (epsilon) conformation "forbidden" or filtered. T0547 418 :LLLG 1umhA 276 :DSVY Number of specific fragments extracted= 1 number of extra gaps= 2 total=45109 # 2biwA.416.152 read from T0547.t2k.many.frag # found chain 2biwA in template set T0547 416 :AILLLGDKQ 2biwA 153 :QPHRLEPSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45110 # 1w6sA.416.72 read from T0547.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)G421 (1w6sA)L78 because E (beta_S) conformation "forbidden" or filtered. T0547 416 :AILLL 1w6sA 73 :NNTFA T0547 422 :DKQ 1w6sA 79 :GLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=45112 # 1zx0A.416.172 read from T0547.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)G421 (1zx0A)M178 because G (3-10) conformation "forbidden" or filtered. T0547 416 :AILLL 1zx0A 173 :SWGEL T0547 422 :DKQ 1zx0A 179 :KSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=45114 # 3nul.416.28 read from T0547.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0547)G421 (3nul)Q35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (3nul)S36 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AILLL 3nul 30 :GSVWA T0547 423 :KQ 3nul 37 :AK Number of specific fragments extracted= 2 number of extra gaps= 1 total=45116 # 1wvhA.416.49 read from T0547.t2k.many.frag # found chain 1wvhA in training set Warning: unaligning (T0547)G421 (1wvhA)D1659 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1wvhA)Q1661 because Y (epsilon') conformation "forbidden" or filtered. T0547 416 :AILLL 1wvhA 1654 :GITLT T0547 422 :D 1wvhA 1660 :N T0547 424 :Q 1wvhA 1662 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=45119 1cby expands to /projects/compbio/data/pdb/1cby.pdb.gz 1cby:Warning: there is no chain 1cby will retry with 1cbyA Skipped atom 1559, because occupancy 0.500 <= existing 0.500 in 1cby Skipped atom 1561, because occupancy 0.500 <= existing 0.500 in 1cby Skipped atom 1563, because occupancy 0.500 <= existing 0.500 in 1cby Skipped atom 1565, because occupancy 0.500 <= existing 0.500 in 1cby Skipped atom 1567, because occupancy 0.500 <= existing 0.500 in 1cby # 1cby.416.63 read from T0547.t2k.many.frag # adding 1cby to template set # found chain 1cby in template set Warning: unaligning (T0547)G421 (1cby)D69 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AILLL 1cby 64 :FQGAI T0547 422 :DKQ 1cby 70 :PLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=45121 # 2bwrA.416.304 read from T0547.t2k.many.frag # found chain 2bwrA in training set T0547 416 :AILLLGDKQ 2bwrA 305 :VYVALNNGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45122 # 2ae5B.416.350 read from T0547.t2k.many.frag # found chain 2ae5B in template set Warning: unaligning (T0547)G421 (2ae5B)A356 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (2ae5B)G357 because S (epsilon) conformation "forbidden" or filtered. T0547 416 :AILLL 2ae5B 351 :WARLF T0547 423 :KQ 2ae5B 358 :QN Number of specific fragments extracted= 2 number of extra gaps= 1 total=45124 # 1p5tA.416.34 read from T0547.t2k.many.frag # found chain 1p5tA in template set Warning: unaligning (T0547)A416 (1p5tA)K35 because Y (epsilon') conformation "forbidden" or filtered. T0547 417 :ILLLGDKQ 1p5tA 36 :LTLLTLGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=45125 # 1j31A.416.106 read from T0547.t2k.many.frag # found chain 1j31A in training set Warning: unaligning (T0547)G421 (1j31A)R112 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1j31A)K113 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AILLL 1j31A 107 :YIGKY T0547 423 :KQ 1j31A 114 :IH Number of specific fragments extracted= 2 number of extra gaps= 1 total=45127 # 1jr7A.416.275 read from T0547.t2k.many.frag # found chain 1jr7A in template set Warning: unaligning (T0547)L419 (1jr7A)G293 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1jr7A)D295 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1jr7A)R296 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AIL 1jr7A 290 :WLH T0547 420 :L 1jr7A 294 :R T0547 423 :KQ 1jr7A 297 :FT Number of specific fragments extracted= 3 number of extra gaps= 2 total=45130 1p30A expands to /projects/compbio/data/pdb/1p30.pdb.gz 1p30A:# 1p30A.416.869 read from T0547.t2k.many.frag # adding 1p30A to template set # found chain 1p30A in template set T0547 416 :AILLLGDKQ 1p30A 869 :LWRIPFSSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45131 # 1kcqA.416.38 read from T0547.t2k.many.frag # found chain 1kcqA in training set Warning: unaligning (T0547)G421 (1kcqA)C201 because E (beta_S) conformation "forbidden" or filtered. T0547 416 :AILLL 1kcqA 196 :NIHQW T0547 422 :DKQ 1kcqA 202 :GSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=45133 # 1zx8A.416.85 read from T0547.t2k.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)G421 (1zx8A)F79 because G (3-10) conformation "forbidden" or filtered. T0547 416 :AILLL 1zx8A 74 :ALCLF T0547 422 :DKQ 1zx8A 80 :GKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=45135 # 1i4wA.416.215 read from T0547.t2k.many.frag # found chain 1i4wA in template set T0547 416 :AILLLGDKQ 1i4wA 204 :LIAISDANE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45136 # 1knwA.417.377 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I417 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. T0547 418 :LLLGDKQN 1knwA 379 :GASMSSNY Number of specific fragments extracted= 1 number of extra gaps= 1 total=45137 # 1xcrA.417.215 read from T0547.t2k.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)L418 (1xcrA)S216 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1xcrA)P220 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :I 1xcrA 215 :K T0547 419 :LLG 1xcrA 217 :HIM T0547 423 :KQN 1xcrA 221 :AEF Number of specific fragments extracted= 3 number of extra gaps= 2 total=45140 # 7odcA.417.388 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I417 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (7odcA)F397 because P (beta_P) conformation "forbidden" or filtered. T0547 418 :LLLGDKQ 7odcA 390 :TVAAAST Number of specific fragments extracted= 1 number of extra gaps= 2 total=45141 # 1ui0A.417.157 read from T0547.t2k.many.frag # found chain 1ui0A in training set Warning: unaligning (T0547)G421 (1ui0A)N162 because D (zeta) conformation "forbidden" or filtered. T0547 417 :ILLL 1ui0A 158 :YLLR T0547 422 :DKQN 1ui0A 163 :PSRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=45143 # 1i4wA.417.189 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)G421 (1i4wA)A182 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1i4wA)G185 because T (delta_L) conformation "forbidden" or filtered. T0547 417 :ILLL 1i4wA 178 :RKLL T0547 422 :DK 1i4wA 183 :RP T0547 425 :N 1i4wA 186 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=45146 # 1pmi.417.388 read from T0547.t2k.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)L418 (1pmi)G391 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1pmi)I395 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1pmi)G397 because T (delta_L) conformation "forbidden" or filtered. T0547 417 :I 1pmi 390 :K T0547 419 :LLG 1pmi 392 :TIQ T0547 423 :K 1pmi 396 :T T0547 425 :N 1pmi 398 :D Number of specific fragments extracted= 4 number of extra gaps= 3 total=45150 # 2ab0A.417.109 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)Q424 (2ab0A)D117 because L (left) conformation "forbidden" or filtered. T0547 417 :ILLLGDK 2ab0A 110 :ATVLVPH T0547 425 :N 2ab0A 118 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=45152 # 3nul.417.29 read from T0547.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0547)N425 (3nul)F39 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLLGDKQ 3nul 31 :SVWAQSAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=45153 # 2bgcA.417.46 read from T0547.t2k.many.frag # found chain 2bgcA in template set Warning: unaligning (T0547)D422 (2bgcA)I51 because E (beta_S) conformation "forbidden" or filtered. T0547 417 :ILLLG 2bgcA 46 :TKLTS T0547 423 :KQN 2bgcA 52 :SEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=45155 # 1w6sA.417.73 read from T0547.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)D422 (1w6sA)G79 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLLG 1w6sA 74 :NTFAL T0547 423 :KQN 1w6sA 80 :LDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=45157 # 2cx1A.417.65 read from T0547.t2k.many.frag # found chain 2cx1A in training set Warning: unaligning (T0547)G421 (2cx1A)E69 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLL 2cx1A 65 :PCLF T0547 422 :DKQN 2cx1A 70 :WSDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=45159 # 1wvhA.417.50 read from T0547.t2k.many.frag # found chain 1wvhA in training set Warning: unaligning (T0547)K423 (1wvhA)Q1661 because Y (epsilon') conformation "forbidden" or filtered. T0547 417 :ILLLGD 1wvhA 1655 :ITLTDN T0547 424 :QN 1wvhA 1662 :RK Number of specific fragments extracted= 2 number of extra gaps= 1 total=45161 # 1k3iA.417.370 read from T0547.t2k.many.frag # found chain 1k3iA in training set T0547 417 :ILLLGDKQN 1k3iA 354 :MNWYYTSGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45162 # 1wrvA.417.206 read from T0547.t2k.many.frag # found chain 1wrvA in training set Warning: unaligning (T0547)G421 (1wrvA)E211 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLL 1wrvA 207 :IYAL T0547 422 :DKQN 1wrvA 212 :HSVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=45164 # 1zx0A.417.173 read from T0547.t2k.many.frag # found chain 1zx0A in template set T0547 417 :ILLLGDKQN 1zx0A 174 :WGELMKSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=45165 # 2biwA.417.153 read from T0547.t2k.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)G421 (2biwA)E158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (2biwA)L162 because L (left) conformation "forbidden" or filtered. T0547 417 :ILLL 2biwA 154 :PHRL T0547 422 :DKQ 2biwA 159 :PSN Number of specific fragments extracted= 2 number of extra gaps= 2 total=45167 # 1p5tA.417.35 read from T0547.t2k.many.frag # found chain 1p5tA in template set Warning: unaligning (T0547)G421 (1p5tA)T40 because E (beta_S) conformation "forbidden" or filtered. T0547 417 :ILLL 1p5tA 36 :LTLL T0547 422 :DKQN 1p5tA 41 :LGAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=45169 # 1utcA.417.127 read from T0547.t2k.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)N425 (1utcA)S136 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLLGDKQ 1utcA 128 :YHWSMEGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=45170 # 2fdiA.417.142 read from T0547.t2k.many.frag # found chain 2fdiA in training set T0547 417 :ILLLGDKQN 2fdiA 153 :IFQFGGLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=45171 # 1kcqA.417.39 read from T0547.t2k.many.frag # found chain 1kcqA in training set Warning: unaligning (T0547)D422 (1kcqA)G202 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1kcqA)S205 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLLG 1kcqA 197 :IHQWC T0547 423 :KQ 1kcqA 203 :SN Number of specific fragments extracted= 2 number of extra gaps= 2 total=45173 # 1tl2A.417.62 read from T0547.t2k.many.frag # found chain 1tl2A in template set Warning: unaligning (T0547)L419 (1tl2A)G65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1tl2A)P67 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :IL 1tl2A 63 :YK T0547 420 :L 1tl2A 66 :T T0547 422 :DKQN 1tl2A 68 :PTHD Number of specific fragments extracted= 3 number of extra gaps= 2 total=45176 # 1cby.417.64 read from T0547.t2k.many.frag # found chain 1cby in template set Warning: unaligning (T0547)G421 (1cby)D69 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLL 1cby 65 :QGAI T0547 422 :DKQN 1cby 70 :PLNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45178 # 1p30A.417.870 read from T0547.t2k.many.frag # found chain 1p30A in template set Warning: unaligning (T0547)G421 (1p30A)F874 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1p30A)F878 because T (delta_L) conformation "forbidden" or filtered. T0547 417 :ILLL 1p30A 870 :WRIP T0547 422 :DKQ 1p30A 875 :SSN Number of specific fragments extracted= 2 number of extra gaps= 2 total=45180 # 1hxn.417.83 read from T0547.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)G421 (1hxn)T303 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1hxn)G306 because S (epsilon) conformation "forbidden" or filtered. T0547 417 :ILLL 1hxn 299 :YVFL T0547 422 :DK 1hxn 304 :KG T0547 425 :N 1hxn 307 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=45183 # 1r5mA.417.270 read from T0547.t2k.many.frag # found chain 1r5mA in training set T0547 417 :ILLLGDKQN 1r5mA 383 :LRIWHGGNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=45184 # 2ae5B.417.351 read from T0547.t2k.many.frag # found chain 2ae5B in template set Warning: unaligning (T0547)D422 (2ae5B)G357 because S (epsilon) conformation "forbidden" or filtered. T0547 417 :ILLLG 2ae5B 352 :ARLFA T0547 423 :KQN 2ae5B 358 :QNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=45186 # 1xjvA.417.241 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)D422 (1xjvA)N252 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLLG 1xjvA 247 :KLQSM T0547 423 :KQN 1xjvA 253 :SEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=45188 # 1xkiA.417.109 read from T0547.t2k.many.frag # found chain 1xkiA in training set T0547 417 :ILLLGDKQN 1xkiA 114 :KLVGRDPKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45189 # 1j31A.417.107 read from T0547.t2k.many.frag # found chain 1j31A in training set Warning: unaligning (T0547)L418 (1j31A)G109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1j31A)K113 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :I 1j31A 108 :I T0547 419 :LLG 1j31A 110 :KYR T0547 423 :KQN 1j31A 114 :IHL Number of specific fragments extracted= 3 number of extra gaps= 2 total=45192 1u2cA expands to /projects/compbio/data/pdb/1u2c.pdb.gz 1u2cA:# 1u2cA.417.202 read from T0547.t2k.many.frag # adding 1u2cA to template set # found chain 1u2cA in template set Warning: unaligning (T0547)L418 (1u2cA)G261 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L420 (1u2cA)S263 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1u2cA)N265 because Y (epsilon') conformation "forbidden" or filtered. T0547 417 :I 1u2cA 260 :L T0547 419 :L 1u2cA 262 :C T0547 421 :G 1u2cA 264 :L T0547 423 :KQN 1u2cA 266 :QNS Number of specific fragments extracted= 4 number of extra gaps= 3 total=45196 # 1knwA.418.378 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G421 (1knwA)M382 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1knwA)N387 because L (left) conformation "forbidden" or filtered. T0547 418 :LLL 1knwA 379 :GAS T0547 422 :DKQN 1knwA 383 :SSNY Number of specific fragments extracted= 2 number of extra gaps= 2 total=45198 # 1xcrA.418.216 read from T0547.t2k.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)G421 (1xcrA)M219 because P (beta_P) conformation "forbidden" or filtered. T0547 418 :LLL 1xcrA 216 :SHI T0547 422 :DKQNP 1xcrA 220 :PAEFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=45200 # 7odcA.418.389 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G421 (7odcA)A393 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (7odcA)F397 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (7odcA)N398 because T (delta_L) conformation "forbidden" or filtered. T0547 418 :LLL 7odcA 390 :TVA T0547 422 :DKQ 7odcA 394 :AST Number of specific fragments extracted= 2 number of extra gaps= 2 total=45202 # 3nul.418.30 read from T0547.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0547)G421 (3nul)Q35 because Y (epsilon') conformation "forbidden" or filtered. T0547 418 :LLL 3nul 32 :VWA T0547 422 :DKQNP 3nul 36 :SAKFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=45204 # 1pmi.418.389 read from T0547.t2k.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)G421 (1pmi)Q394 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1pmi)G397 because T (delta_L) conformation "forbidden" or filtered. T0547 418 :LLL 1pmi 391 :GTI T0547 422 :DK 1pmi 395 :IT T0547 425 :NP 1pmi 398 :DD Number of specific fragments extracted= 3 number of extra gaps= 2 total=45207 # 1ui0A.418.158 read from T0547.t2k.many.frag # found chain 1ui0A in training set Warning: unaligning (T0547)G421 (1ui0A)N162 because D (zeta) conformation "forbidden" or filtered. T0547 418 :LLL 1ui0A 159 :LLR T0547 422 :DKQNP 1ui0A 163 :PSRAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=45209 # 1i4wA.418.190 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)G421 (1i4wA)A182 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1i4wA)R183 because P (beta_P) conformation "forbidden" or filtered. T0547 418 :LLL 1i4wA 179 :KLL T0547 423 :KQNP 1i4wA 184 :PGMH Number of specific fragments extracted= 2 number of extra gaps= 1 total=45211 # 1w6sA.418.74 read from T0547.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)G421 (1w6sA)L78 because E (beta_S) conformation "forbidden" or filtered. T0547 418 :LLL 1w6sA 75 :TFA T0547 422 :DKQNP 1w6sA 79 :GLDDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=45213 # 2ab0A.418.110 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)Q424 (2ab0A)D117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2ab0A)F119 because D (zeta) conformation "forbidden" or filtered. T0547 418 :LLLGDK 2ab0A 111 :TVLVPH T0547 425 :N 2ab0A 118 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=45215 # 1cby.418.65 read from T0547.t2k.many.frag # found chain 1cby in template set Warning: unaligning (T0547)G421 (1cby)D69 because P (beta_P) conformation "forbidden" or filtered. T0547 418 :LLL 1cby 66 :GAI T0547 422 :DKQNP 1cby 70 :PLNLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=45217 # 1p30A.418.871 read from T0547.t2k.many.frag # found chain 1p30A in template set Warning: unaligning (T0547)G421 (1p30A)F874 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1p30A)F878 because T (delta_L) conformation "forbidden" or filtered. T0547 418 :LLL 1p30A 871 :RIP T0547 422 :DKQ 1p30A 875 :SSN T0547 426 :P 1p30A 879 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=45220 # 1kcqA.418.40 read from T0547.t2k.many.frag # found chain 1kcqA in training set T0547 418 :LLLGDKQNP 1kcqA 198 :HQWCGSNSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45221 # 2fdiA.418.143 read from T0547.t2k.many.frag # found chain 2fdiA in training set Warning: unaligning (T0547)P426 (2fdiA)N162 because G (3-10) conformation "forbidden" or filtered. T0547 418 :LLLGDKQN 2fdiA 154 :FQFGGLKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=45222 # 1xkiA.418.110 read from T0547.t2k.many.frag # found chain 1xkiA in training set Warning: unaligning (T0547)L420 (1xkiA)G117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1xkiA)N123 because G (3-10) conformation "forbidden" or filtered. T0547 418 :LL 1xkiA 115 :LV T0547 421 :GDKQN 1xkiA 118 :RDPKN Number of specific fragments extracted= 2 number of extra gaps= 2 total=45224 # 1zx0A.418.174 read from T0547.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)P426 (1zx0A)S183 because G (3-10) conformation "forbidden" or filtered. T0547 418 :LLLGDKQN 1zx0A 175 :GELMKSKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=45225 # 1wvhA.418.51 read from T0547.t2k.many.frag # found chain 1wvhA in training set Warning: unaligning (T0547)K423 (1wvhA)Q1661 because Y (epsilon') conformation "forbidden" or filtered. T0547 418 :LLLGD 1wvhA 1656 :TLTDN T0547 424 :QNP 1wvhA 1662 :RKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45227 # 1u2cA.418.203 read from T0547.t2k.many.frag # found chain 1u2cA in template set Warning: unaligning (T0547)L418 (1u2cA)G261 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L420 (1u2cA)S263 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1u2cA)L264 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1u2cA)N265 because Y (epsilon') conformation "forbidden" or filtered. T0547 419 :L 1u2cA 262 :C T0547 423 :KQNP 1u2cA 266 :QNSV Number of specific fragments extracted= 2 number of extra gaps= 2 total=45229 # 2biwA.418.154 read from T0547.t2k.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)G421 (2biwA)E158 because P (beta_P) conformation "forbidden" or filtered. T0547 418 :LLL 2biwA 155 :HRL T0547 422 :DKQNP 2biwA 159 :PSNLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=45231 1guxB expands to /projects/compbio/data/pdb/1gux.pdb.gz 1guxB:# 1guxB.418.74 read from T0547.t2k.many.frag # adding 1guxB to template set # found chain 1guxB in template set T0547 418 :LLLGDKQNP 1guxB 710 :GICKVKNID Number of specific fragments extracted= 1 number of extra gaps= 0 total=45232 # 1xjvA.418.242 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)N425 (1xjvA)N255 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1xjvA)Q256 because E (beta_S) conformation "forbidden" or filtered. T0547 418 :LLLGDKQ 1xjvA 248 :LQSMNSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=45233 # 1wrvA.418.207 read from T0547.t2k.many.frag # found chain 1wrvA in training set T0547 418 :LLLGDKQNP 1wrvA 208 :YALEHSVNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45234 # 2ew0A.418.109 read from T0547.t2k.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)K423 (2ew0A)N115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (2ew0A)G117 because L (left) conformation "forbidden" or filtered. T0547 418 :LLLGD 2ew0A 110 :DAIAH T0547 424 :Q 2ew0A 116 :E T0547 426 :P 2ew0A 118 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=45237 # 1wdpA.418.347 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)D422 (1wdpA)P352 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1wdpA)A355 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1wdpA)K356 because L (left) conformation "forbidden" or filtered. T0547 418 :LLLG 1wdpA 348 :DSEQ T0547 423 :KQ 1wdpA 353 :SD Number of specific fragments extracted= 2 number of extra gaps= 2 total=45239 # 1j31A.418.108 read from T0547.t2k.many.frag # found chain 1j31A in training set Warning: unaligning (T0547)L418 (1j31A)G109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1j31A)L116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1j31A)F117 because E (beta_S) conformation "forbidden" or filtered. T0547 419 :LLGDKQ 1j31A 110 :KYRKIH Number of specific fragments extracted= 1 number of extra gaps= 2 total=45240 # 1p5tA.418.36 read from T0547.t2k.many.frag # found chain 1p5tA in template set Warning: unaligning (T0547)G421 (1p5tA)T40 because E (beta_S) conformation "forbidden" or filtered. T0547 418 :LLL 1p5tA 37 :TLL T0547 422 :DKQNP 1p5tA 41 :LGAQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=45242 # 1k3iA.418.371 read from T0547.t2k.many.frag # found chain 1k3iA in training set Warning: unaligning (T0547)Q424 (1k3iA)G361 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1k3iA)G363 because S (epsilon) conformation "forbidden" or filtered. T0547 418 :LLLGDK 1k3iA 355 :NWYYTS T0547 425 :N 1k3iA 362 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=45244 # 2ae5B.418.352 read from T0547.t2k.many.frag # found chain 2ae5B in template set Warning: unaligning (T0547)D422 (2ae5B)G357 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2ae5B)A361 because G (3-10) conformation "forbidden" or filtered. T0547 418 :LLLG 2ae5B 353 :RLFA T0547 423 :KQN 2ae5B 358 :QNF Number of specific fragments extracted= 2 number of extra gaps= 2 total=45246 # 2bgcA.418.47 read from T0547.t2k.many.frag # found chain 2bgcA in template set Warning: unaligning (T0547)G421 (2bgcA)S50 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (2bgcA)S52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2bgcA)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 418 :LLL 2bgcA 47 :KLT T0547 422 :D 2bgcA 51 :I T0547 424 :QN 2bgcA 53 :EN Number of specific fragments extracted= 3 number of extra gaps= 3 total=45249 # 1r5mA.418.271 read from T0547.t2k.many.frag # found chain 1r5mA in training set Warning: unaligning (T0547)Q424 (1r5mA)N390 because Y (epsilon') conformation "forbidden" or filtered. T0547 418 :LLLGDK 1r5mA 384 :RIWHGG T0547 425 :NP 1r5mA 391 :GN Number of specific fragments extracted= 2 number of extra gaps= 1 total=45251 # 2fnuA.418.286 read from T0547.t2k.many.frag # found chain 2fnuA in training set T0547 418 :LLLGDKQNP 2fnuA 287 :PILMHQKFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=45252 # 1knwA.419.379 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P426 (1knwA)N387 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1knwA)S388 because L (left) conformation "forbidden" or filtered. T0547 419 :LLGDKQN 1knwA 380 :ASMSSNY Number of specific fragments extracted= 1 number of extra gaps= 1 total=45253 # 1xcrA.419.217 read from T0547.t2k.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)N425 (1xcrA)F223 because P (beta_P) conformation "forbidden" or filtered. T0547 419 :LLGDKQ 1xcrA 217 :HIMPAE T0547 426 :PA 1xcrA 224 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=45255 # 3nul.419.31 read from T0547.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0547)A427 (3nul)Q41 because P (beta_P) conformation "forbidden" or filtered. T0547 419 :LLGDKQNP 3nul 33 :WAQSAKFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=45256 # 7odcA.419.390 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G421 (7odcA)A393 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (7odcA)N398 because T (delta_L) conformation "forbidden" or filtered. T0547 419 :LL 7odcA 391 :VA T0547 422 :DKQN 7odcA 394 :ASTF T0547 427 :A 7odcA 399 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=45259 # 1ui0A.419.159 read from T0547.t2k.many.frag # found chain 1ui0A in training set Warning: unaligning (T0547)G421 (1ui0A)N162 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1ui0A)G168 because T (delta_L) conformation "forbidden" or filtered. T0547 419 :LL 1ui0A 160 :LR T0547 422 :DKQNP 1ui0A 163 :PSRAP Number of specific fragments extracted= 2 number of extra gaps= 2 total=45261 # 1w6sA.419.75 read from T0547.t2k.many.frag # found chain 1w6sA in training set T0547 419 :LLGDKQNPA 1w6sA 76 :FALGLDDPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=45262 # 1kcqA.419.41 read from T0547.t2k.many.frag # found chain 1kcqA in training set Warning: unaligning (T0547)G421 (1kcqA)C201 because E (beta_S) conformation "forbidden" or filtered. T0547 419 :LL 1kcqA 199 :QW T0547 422 :DKQNPA 1kcqA 202 :GSNSNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=45264 # 1i4wA.419.191 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)D422 (1i4wA)R183 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1i4wA)M186 because P (beta_P) conformation "forbidden" or filtered. T0547 419 :LLG 1i4wA 180 :LLA T0547 423 :KQ 1i4wA 184 :PG T0547 426 :PA 1i4wA 187 :HS Number of specific fragments extracted= 3 number of extra gaps= 2 total=45267 # 1cby.419.66 read from T0547.t2k.many.frag # found chain 1cby in template set Warning: unaligning (T0547)G421 (1cby)D69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1cby)L73 because L (left) conformation "forbidden" or filtered. T0547 419 :LL 1cby 67 :AI T0547 422 :DKQ 1cby 70 :PLN T0547 426 :PA 1cby 74 :NF Number of specific fragments extracted= 3 number of extra gaps= 2 total=45270 # 1p30A.419.872 read from T0547.t2k.many.frag # found chain 1p30A in template set Warning: unaligning (T0547)G421 (1p30A)F874 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1p30A)F878 because T (delta_L) conformation "forbidden" or filtered. T0547 419 :LL 1p30A 872 :IP T0547 422 :DKQ 1p30A 875 :SSN T0547 426 :PA 1p30A 879 :MS Number of specific fragments extracted= 3 number of extra gaps= 2 total=45273 # 1pmi.419.390 read from T0547.t2k.many.frag # found chain 1pmi in training set T0547 419 :LLGDKQNPA 1pmi 392 :TIQITGDDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45274 # 1xkiA.419.111 read from T0547.t2k.many.frag # found chain 1xkiA in training set Warning: unaligning (T0547)P426 (1xkiA)N123 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1xkiA)L124 because L (left) conformation "forbidden" or filtered. T0547 419 :LLGDKQN 1xkiA 116 :VGRDPKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=45275 # 1u2cA.419.204 read from T0547.t2k.many.frag # found chain 1u2cA in template set Warning: unaligning (T0547)L420 (1u2cA)S263 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1u2cA)L264 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1u2cA)N265 because Y (epsilon') conformation "forbidden" or filtered. T0547 419 :L 1u2cA 262 :C T0547 423 :KQNPA 1u2cA 266 :QNSVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=45277 # 1wdpA.419.348 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)G421 (1wdpA)Q351 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1wdpA)K356 because L (left) conformation "forbidden" or filtered. T0547 419 :LL 1wdpA 349 :SE T0547 422 :DKQN 1wdpA 352 :PSDA T0547 427 :A 1wdpA 357 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=45280 # 2fnuA.419.287 read from T0547.t2k.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)D422 (2fnuA)H291 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (2fnuA)F294 because G (3-10) conformation "forbidden" or filtered. T0547 419 :LLG 2fnuA 288 :ILM T0547 423 :KQ 2fnuA 292 :QK T0547 426 :PA 2fnuA 295 :FT Number of specific fragments extracted= 3 number of extra gaps= 2 total=45283 # 2fdiA.419.144 read from T0547.t2k.many.frag # found chain 2fdiA in training set Warning: unaligning (T0547)D422 (2fdiA)G158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2fdiA)N162 because G (3-10) conformation "forbidden" or filtered. T0547 419 :LLG 2fdiA 155 :QFG T0547 423 :KQN 2fdiA 159 :LKR T0547 427 :A 2fdiA 163 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=45286 # 2ab0A.419.111 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)Q424 (2ab0A)D117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2ab0A)F119 because D (zeta) conformation "forbidden" or filtered. T0547 419 :LLGDK 2ab0A 112 :VLVPH T0547 425 :N 2ab0A 118 :I T0547 427 :A 2ab0A 120 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=45289 # 1guxB.419.75 read from T0547.t2k.many.frag # found chain 1guxB in template set Warning: unaligning (T0547)Q424 (1guxB)N716 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1guxB)L719 because D (zeta) conformation "forbidden" or filtered. T0547 419 :LLGDK 1guxB 711 :ICKVK T0547 425 :NP 1guxB 717 :ID Number of specific fragments extracted= 2 number of extra gaps= 2 total=45291 2fh5A expands to /projects/compbio/data/pdb/2fh5.pdb.gz 2fh5A:# 2fh5A.419.26 read from T0547.t2k.many.frag # adding 2fh5A to template set # found chain 2fh5A in template set Warning: unaligning (T0547)G421 (2fh5A)G20 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (2fh5A)D23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2fh5A)C25 because L (left) conformation "forbidden" or filtered. T0547 419 :LL 2fh5A 18 :FQ T0547 422 :DK 2fh5A 21 :VS T0547 425 :N 2fh5A 24 :S T0547 427 :A 2fh5A 26 :T Number of specific fragments extracted= 4 number of extra gaps= 3 total=45295 # 1xjvA.419.243 read from T0547.t2k.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)P426 (1xjvA)Q256 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1xjvA)T257 because P (beta_P) conformation "forbidden" or filtered. T0547 419 :LLGDKQN 1xjvA 249 :QSMNSEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=45296 # 1wvhA.419.52 read from T0547.t2k.many.frag # found chain 1wvhA in training set Warning: unaligning (T0547)K423 (1wvhA)Q1661 because Y (epsilon') conformation "forbidden" or filtered. T0547 419 :LLGD 1wvhA 1657 :LTDN T0547 424 :QNPA 1wvhA 1662 :RKLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=45298 # 1j31A.419.109 read from T0547.t2k.many.frag # found chain 1j31A in training set Warning: unaligning (T0547)P426 (1j31A)F117 because E (beta_S) conformation "forbidden" or filtered. T0547 419 :LLGDKQN 1j31A 110 :KYRKIHL T0547 427 :A 1j31A 118 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=45300 1u02A expands to /projects/compbio/data/pdb/1u02.pdb.gz 1u02A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1u02A.419.116 read from T0547.t2k.many.frag # adding 1u02A to template set # found chain 1u02A in template set T0547 419 :LLGDKQNPA 1u02A 117 :YHLGLMGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=45301 # 1ryiA.419.221 read from T0547.t2k.many.frag # found chain 1ryiA in training set Warning: unaligning (T0547)Q424 (1ryiA)G214 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1ryiA)N216 because G (3-10) conformation "forbidden" or filtered. T0547 419 :LLGDK 1ryiA 209 :FFKQL T0547 425 :N 1ryiA 215 :L T0547 427 :A 1ryiA 217 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=45304 # 1ir6A.419.211 read from T0547.t2k.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)Q424 (1ir6A)G256 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1ir6A)G259 because T (delta_L) conformation "forbidden" or filtered. T0547 419 :LLGDK 1ir6A 251 :LAEAV T0547 425 :NP 1ir6A 257 :YT Number of specific fragments extracted= 2 number of extra gaps= 2 total=45306 # 1zx0A.419.175 read from T0547.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)P426 (1zx0A)S183 because G (3-10) conformation "forbidden" or filtered. T0547 419 :LLGDKQN 1zx0A 176 :ELMKSKY T0547 427 :A 1zx0A 184 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=45308 # 1ew0A.419.62 read from T0547.t2k.many.frag # found chain 1ew0A in training set Warning: unaligning (T0547)Q424 (1ew0A)P189 because C (cis) conformation "forbidden" or filtered. T0547 419 :LLGDK 1ew0A 184 :ILMPE T0547 425 :NPA 1ew0A 190 :YRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=45310 # 1w99A.419.210 read from T0547.t2k.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)L419 (1w99A)A294 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1w99A)V296 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1w99A)E297 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1w99A)P299 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1w99A)S301 because G (3-10) conformation "forbidden" or filtered. T0547 420 :L 1w99A 295 :L T0547 423 :K 1w99A 298 :S T0547 425 :N 1w99A 300 :S T0547 427 :A 1w99A 302 :K Number of specific fragments extracted= 4 number of extra gaps= 4 total=45314 # 1y7tA.419.292 read from T0547.t2k.many.frag # found chain 1y7tA in training set T0547 419 :LLGDKQNPA 1y7tA 298 :VVEGLEINE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45315 # 1tzlA.419.283 read from T0547.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)L419 (1tzlA)R285 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1tzlA)N292 because L (left) conformation "forbidden" or filtered. T0547 420 :LGDKQN 1tzlA 286 :VVRNAL T0547 427 :A 1tzlA 293 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=45317 # 1knwA.420.380 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G421 (1knwA)M382 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1knwA)Y386 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1knwA)N387 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1knwA)S388 because L (left) conformation "forbidden" or filtered. T0547 420 :L 1knwA 381 :S T0547 422 :DKQ 1knwA 383 :SSN T0547 428 :D 1knwA 389 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=45320 # 1xcrA.420.218 read from T0547.t2k.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)D428 (1xcrA)C226 because P (beta_P) conformation "forbidden" or filtered. T0547 420 :LGDKQNPA 1xcrA 218 :IMPAEFSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=45321 # 3nul.420.32 read from T0547.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0547)G421 (3nul)Q35 because Y (epsilon') conformation "forbidden" or filtered. T0547 420 :L 3nul 34 :A T0547 422 :DKQNPAD 3nul 36 :SAKFPQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45323 # 1ui0A.420.160 read from T0547.t2k.many.frag # found chain 1ui0A in training set T0547 420 :LGDKQNPAD 1ui0A 161 :RNPSRAPGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45324 # 7odcA.420.391 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G421 (7odcA)A393 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (7odcA)A394 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (7odcA)N398 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. T0547 420 :L 7odcA 392 :A T0547 423 :KQN 7odcA 395 :STF T0547 428 :D 7odcA 400 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=45327 # 1kcqA.420.42 read from T0547.t2k.many.frag # found chain 1kcqA in training set Warning: unaligning (T0547)G421 (1kcqA)C201 because E (beta_S) conformation "forbidden" or filtered. T0547 420 :L 1kcqA 200 :W T0547 422 :DKQNPAD 1kcqA 202 :GSNSNRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=45329 # 1cby.420.67 read from T0547.t2k.many.frag # found chain 1cby in template set T0547 420 :LGDKQNPAD 1cby 68 :IDPLNLNFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45330 # 1wdpA.420.349 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)P426 (1wdpA)K356 because L (left) conformation "forbidden" or filtered. T0547 420 :LGDKQN 1wdpA 350 :EQPSDA T0547 427 :AD 1wdpA 357 :SG Number of specific fragments extracted= 2 number of extra gaps= 1 total=45332 # 1u2cA.420.205 read from T0547.t2k.many.frag # found chain 1u2cA in template set Warning: unaligning (T0547)L420 (1u2cA)S263 because L (left) conformation "forbidden" or filtered. T0547 421 :GDKQNPAD 1u2cA 264 :LNQNSVPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=45333 # 1p30A.420.873 read from T0547.t2k.many.frag # found chain 1p30A in template set T0547 420 :LGDKQNPAD 1p30A 873 :PFSSNFMSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=45334 # 2fnuA.420.288 read from T0547.t2k.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)G421 (2fnuA)M290 because P (beta_P) conformation "forbidden" or filtered. T0547 420 :L 2fnuA 289 :L T0547 422 :DKQNPAD 2fnuA 291 :HQKFFTC Number of specific fragments extracted= 2 number of extra gaps= 1 total=45336 # 1w6sA.420.76 read from T0547.t2k.many.frag # found chain 1w6sA in training set T0547 420 :LGDKQNPAD 1w6sA 77 :ALGLDDPGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=45337 # 1ew0A.420.63 read from T0547.t2k.many.frag # found chain 1ew0A in training set Warning: unaligning (T0547)D422 (1ew0A)P187 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1ew0A)P189 because C (cis) conformation "forbidden" or filtered. T0547 420 :LG 1ew0A 185 :LM T0547 423 :K 1ew0A 188 :E T0547 425 :NPAD 1ew0A 190 :YRHE Number of specific fragments extracted= 3 number of extra gaps= 2 total=45340 # 1i4wA.420.192 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)G421 (1i4wA)A182 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1i4wA)R183 because P (beta_P) conformation "forbidden" or filtered. T0547 420 :L 1i4wA 181 :L T0547 423 :KQNPAD 1i4wA 184 :PGMHSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=45342 # 2fh5A.420.27 read from T0547.t2k.many.frag # found chain 2fh5A in template set Warning: unaligning (T0547)G421 (2fh5A)G20 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2fh5A)C25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (2fh5A)T26 because G (3-10) conformation "forbidden" or filtered. T0547 420 :L 2fh5A 19 :Q T0547 422 :DKQN 2fh5A 21 :VSDS T0547 428 :D 2fh5A 27 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=45345 # 1xkiA.420.112 read from T0547.t2k.many.frag # found chain 1xkiA in training set Warning: unaligning (T0547)L420 (1xkiA)G117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1xkiA)N123 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1xkiA)L124 because L (left) conformation "forbidden" or filtered. T0547 421 :GDKQN 1xkiA 118 :RDPKN T0547 428 :D 1xkiA 125 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=45347 # 1fiuA.420.188 read from T0547.t2k.many.frag # found chain 1fiuA in training set T0547 420 :LGDKQNPAD 1fiuA 189 :TIRSDRAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45348 # 1ir6A.420.212 read from T0547.t2k.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)N425 (1ir6A)Y257 because P (beta_P) conformation "forbidden" or filtered. T0547 420 :LGDKQ 1ir6A 252 :AEAVG T0547 426 :PAD 1ir6A 258 :TGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=45350 # 1guxB.420.76 read from T0547.t2k.many.frag # found chain 1guxB in template set Warning: unaligning (T0547)Q424 (1guxB)N716 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1guxB)L719 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1guxB)K720 because P (beta_P) conformation "forbidden" or filtered. T0547 420 :LGDK 1guxB 712 :CKVK T0547 425 :NP 1guxB 717 :ID Number of specific fragments extracted= 2 number of extra gaps= 2 total=45352 # 1pmi.420.391 read from T0547.t2k.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)D422 (1pmi)I395 because P (beta_P) conformation "forbidden" or filtered. T0547 420 :LG 1pmi 393 :IQ T0547 423 :KQNPAD 1pmi 396 :TGDDST Number of specific fragments extracted= 2 number of extra gaps= 1 total=45354 # 1u02A.420.117 read from T0547.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0547)G421 (1u02A)L119 because G (3-10) conformation "forbidden" or filtered. T0547 420 :L 1u02A 118 :H T0547 422 :DKQNPAD 1u02A 120 :GLMGADM Number of specific fragments extracted= 2 number of extra gaps= 1 total=45356 # 1w61A.420.230 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)D422 (1w61A)S233 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1w61A)N236 because G (3-10) conformation "forbidden" or filtered. T0547 420 :LG 1w61A 231 :DI T0547 423 :KQ 1w61A 234 :VQ T0547 426 :PAD 1w61A 237 :LSR Number of specific fragments extracted= 3 number of extra gaps= 2 total=45359 # 1j31A.420.110 read from T0547.t2k.many.frag # found chain 1j31A in training set Warning: unaligning (T0547)P426 (1j31A)F117 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1j31A)Y118 because S (epsilon) conformation "forbidden" or filtered. T0547 420 :LGDKQN 1j31A 111 :YRKIHL T0547 428 :D 1j31A 119 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=45361 # 2fdiA.420.145 read from T0547.t2k.many.frag # found chain 2fdiA in training set Warning: unaligning (T0547)G421 (2fdiA)G157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2fdiA)N162 because G (3-10) conformation "forbidden" or filtered. T0547 420 :L 2fdiA 156 :F T0547 422 :DKQN 2fdiA 158 :GLKR T0547 427 :AD 2fdiA 163 :DP Number of specific fragments extracted= 3 number of extra gaps= 2 total=45364 # 1w99A.420.211 read from T0547.t2k.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)Q424 (1w99A)P299 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1w99A)S301 because G (3-10) conformation "forbidden" or filtered. T0547 420 :LGDK 1w99A 295 :LVES T0547 425 :N 1w99A 300 :S T0547 427 :AD 1w99A 302 :KS Number of specific fragments extracted= 3 number of extra gaps= 2 total=45367 # 1y7tA.420.293 read from T0547.t2k.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)D422 (1y7tA)G301 because T (delta_L) conformation "forbidden" or filtered. T0547 420 :LG 1y7tA 299 :VE T0547 423 :KQNPAD 1y7tA 302 :LEINEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=45369 # 1zx0A.420.176 read from T0547.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)P426 (1zx0A)S183 because G (3-10) conformation "forbidden" or filtered. T0547 420 :LGDKQN 1zx0A 177 :LMKSKY T0547 427 :AD 1zx0A 184 :DI Number of specific fragments extracted= 2 number of extra gaps= 1 total=45371 # 1ryiA.420.222 read from T0547.t2k.many.frag # found chain 1ryiA in training set Warning: unaligning (T0547)Q424 (1ryiA)G214 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1ryiA)N216 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1ryiA)A218 because E (beta_S) conformation "forbidden" or filtered. T0547 420 :LGDK 1ryiA 210 :FKQL T0547 425 :N 1ryiA 215 :L T0547 427 :A 1ryiA 217 :N Number of specific fragments extracted= 3 number of extra gaps= 3 total=45374 # 2ab0A.420.112 read from T0547.t2k.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)Q424 (2ab0A)D117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2ab0A)F119 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE in next template residue (2ab0A)G122 T0547 420 :LGDK 2ab0A 113 :LVPH T0547 425 :N 2ab0A 118 :I T0547 427 :A 2ab0A 120 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=45377 # 2exrA.420.321 read from T0547.t2k.many.frag # found chain 2exrA in training set T0547 420 :LGDKQNPAD 2exrA 322 :YRDSDSNST Number of specific fragments extracted= 1 number of extra gaps= 0 total=45378 # 1knwA.421.381 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P426 (1knwA)N387 because L (left) conformation "forbidden" or filtered. T0547 421 :GDKQN 1knwA 382 :MSSNY T0547 427 :ADL 1knwA 388 :SRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=45380 # 1xcrA.421.219 read from T0547.t2k.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)N425 (1xcrA)F223 because P (beta_P) conformation "forbidden" or filtered. T0547 421 :GDKQ 1xcrA 219 :MPAE T0547 426 :PADL 1xcrA 224 :SSCP Number of specific fragments extracted= 2 number of extra gaps= 1 total=45382 # 1ui0A.421.161 read from T0547.t2k.many.frag # found chain 1ui0A in training set Warning: unaligning (T0547)K423 (1ui0A)S164 because P (beta_P) conformation "forbidden" or filtered. T0547 421 :GD 1ui0A 162 :NP T0547 424 :QNPADL 1ui0A 165 :RAPGSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=45384 # 3nul.421.33 read from T0547.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0547)D422 (3nul)S36 because P (beta_P) conformation "forbidden" or filtered. T0547 421 :G 3nul 35 :Q T0547 423 :KQNPADL 3nul 37 :AKFPQLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=45386 # 7odcA.421.392 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G421 (7odcA)A393 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (7odcA)F397 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (7odcA)N398 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. T0547 422 :DKQ 7odcA 394 :AST T0547 428 :DL 7odcA 400 :FQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=45388 # 1u2cA.421.206 read from T0547.t2k.many.frag # found chain 1u2cA in template set T0547 421 :GDKQNPADL 1u2cA 264 :LNQNSVPDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=45389 # 2fnuA.421.289 read from T0547.t2k.many.frag # found chain 2fnuA in training set T0547 421 :GDKQNPADL 2fnuA 290 :MHQKFFTCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=45390 # 1cby.421.68 read from T0547.t2k.many.frag # found chain 1cby in template set Warning: unaligning (T0547)G421 (1cby)D69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1cby)L73 because L (left) conformation "forbidden" or filtered. T0547 422 :DKQ 1cby 70 :PLN T0547 426 :PADL 1cby 74 :NFNF Number of specific fragments extracted= 2 number of extra gaps= 2 total=45392 # 2fh5A.421.28 read from T0547.t2k.many.frag # found chain 2fh5A in template set Warning: unaligning (T0547)G421 (2fh5A)G20 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (2fh5A)D23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2fh5A)C25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (2fh5A)G27 because S (epsilon) conformation "forbidden" or filtered. T0547 422 :DK 2fh5A 21 :VS T0547 425 :N 2fh5A 24 :S T0547 427 :A 2fh5A 26 :T T0547 429 :L 2fh5A 28 :P Number of specific fragments extracted= 4 number of extra gaps= 4 total=45396 # 1wdpA.421.350 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)G421 (1wdpA)Q351 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1wdpA)P352 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1wdpA)K356 because L (left) conformation "forbidden" or filtered. T0547 423 :KQN 1wdpA 353 :SDA T0547 427 :ADL 1wdpA 357 :SGP Number of specific fragments extracted= 2 number of extra gaps= 2 total=45398 # 1ew0A.421.64 read from T0547.t2k.many.frag # found chain 1ew0A in training set Warning: unaligning (T0547)G421 (1ew0A)M186 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1ew0A)P189 because C (cis) conformation "forbidden" or filtered. T0547 422 :DK 1ew0A 187 :PE T0547 425 :NPADL 1ew0A 190 :YRHEH Number of specific fragments extracted= 2 number of extra gaps= 2 total=45400 # 1kcqA.421.43 read from T0547.t2k.many.frag # found chain 1kcqA in training set Warning: unaligning (T0547)G421 (1kcqA)C201 because E (beta_S) conformation "forbidden" or filtered. T0547 422 :DKQNPADL 1kcqA 202 :GSNSNRYE Number of specific fragments extracted= 1 number of extra gaps= 1 total=45401 # 1fiuA.421.189 read from T0547.t2k.many.frag # found chain 1fiuA in training set Warning: unaligning (T0547)G421 (1fiuA)I190 because E (beta_S) conformation "forbidden" or filtered. T0547 422 :DKQNPADL 1fiuA 191 :RSDRAQNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=45402 # 1p30A.421.874 read from T0547.t2k.many.frag # found chain 1p30A in template set Warning: unaligning (T0547)G421 (1p30A)F874 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1p30A)F878 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L429 (1p30A)G882 because Y (epsilon') conformation "forbidden" or filtered. T0547 422 :DKQ 1p30A 875 :SSN T0547 426 :PAD 1p30A 879 :MSM Number of specific fragments extracted= 2 number of extra gaps= 3 total=45404 # 1ir6A.421.213 read from T0547.t2k.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)Q424 (1ir6A)G256 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1ir6A)Y257 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1ir6A)K260 because P (beta_P) conformation "forbidden" or filtered. T0547 421 :GDK 1ir6A 253 :EAV T0547 426 :PA 1ir6A 258 :TG T0547 429 :L 1ir6A 261 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=45407 # 1xkiA.421.113 read from T0547.t2k.many.frag # found chain 1xkiA in training set Warning: unaligning (T0547)P426 (1xkiA)N123 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1xkiA)L124 because L (left) conformation "forbidden" or filtered. T0547 421 :GDKQN 1xkiA 118 :RDPKN T0547 428 :DL 1xkiA 125 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=45409 # 1w61A.421.231 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)D422 (1w61A)S233 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1w61A)N236 because G (3-10) conformation "forbidden" or filtered. T0547 421 :G 1w61A 232 :I T0547 423 :KQ 1w61A 234 :VQ T0547 426 :PADL 1w61A 237 :LSRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=45412 # 1i4wA.421.193 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)G421 (1i4wA)A182 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1i4wA)G185 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L429 (1i4wA)S190 because Y (epsilon') conformation "forbidden" or filtered. T0547 422 :DK 1i4wA 183 :RP T0547 425 :NPAD 1i4wA 186 :MHSR Number of specific fragments extracted= 2 number of extra gaps= 3 total=45414 # 1cnv.421.195 read from T0547.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)G421 (1cnv)Y196 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1cnv)G199 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1cnv)I201 because G (3-10) conformation "forbidden" or filtered. T0547 422 :DK 1cnv 197 :ST T0547 425 :N 1cnv 200 :N T0547 427 :ADL 1cnv 202 :QRI Number of specific fragments extracted= 3 number of extra gaps= 3 total=45417 # 1j31A.421.111 read from T0547.t2k.many.frag # found chain 1j31A in training set Warning: unaligning (T0547)P426 (1j31A)F117 because E (beta_S) conformation "forbidden" or filtered. T0547 421 :GDKQN 1j31A 112 :RKIHL T0547 427 :ADL 1j31A 118 :YRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=45419 # 1guxB.421.77 read from T0547.t2k.many.frag # found chain 1guxB in template set Warning: unaligning (T0547)Q424 (1guxB)N716 because L (left) conformation "forbidden" or filtered. T0547 421 :GDK 1guxB 713 :KVK T0547 425 :NPADL 1guxB 717 :IDLKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=45421 # 1w6sA.421.77 read from T0547.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)G421 (1w6sA)L78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1w6sA)G79 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQNPADL 1w6sA 80 :LDDPGTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=45422 # 1y7tA.421.294 read from T0547.t2k.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)D422 (1y7tA)G301 because T (delta_L) conformation "forbidden" or filtered. T0547 421 :G 1y7tA 300 :E T0547 423 :KQNPADL 1y7tA 302 :LEINEFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=45424 # 1u02A.421.118 read from T0547.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0547)K423 (1u02A)L121 because G (3-10) conformation "forbidden" or filtered. T0547 421 :GD 1u02A 119 :LG T0547 424 :QNPADL 1u02A 122 :MGADMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=45426 # 1w99A.421.212 read from T0547.t2k.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)Q424 (1w99A)P299 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1w99A)S301 because G (3-10) conformation "forbidden" or filtered. T0547 421 :GDK 1w99A 296 :VES T0547 425 :N 1w99A 300 :S T0547 427 :ADL 1w99A 302 :KSI Number of specific fragments extracted= 3 number of extra gaps= 2 total=45429 # 2exrA.421.322 read from T0547.t2k.many.frag # found chain 2exrA in training set Warning: unaligning (T0547)G421 (2exrA)R323 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (2exrA)S327 because P (beta_P) conformation "forbidden" or filtered. T0547 422 :DKQ 2exrA 324 :DSD T0547 426 :PADL 2exrA 328 :NSTI Number of specific fragments extracted= 2 number of extra gaps= 2 total=45431 # 1ryiA.421.223 read from T0547.t2k.many.frag # found chain 1ryiA in training set Warning: unaligning (T0547)Q424 (1ryiA)G214 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1ryiA)N216 because G (3-10) conformation "forbidden" or filtered. T0547 421 :GDK 1ryiA 211 :KQL T0547 425 :N 1ryiA 215 :L T0547 427 :ADL 1ryiA 217 :NAF Number of specific fragments extracted= 3 number of extra gaps= 2 total=45434 # 1xqwA.421.183 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)D422 (1xqwA)S185 because E (beta_S) conformation "forbidden" or filtered. T0547 421 :G 1xqwA 184 :R T0547 423 :KQNPADL 1xqwA 186 :EDWPPEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=45436 1jk0B expands to /projects/compbio/data/pdb/1jk0.pdb.gz 1jk0B:# 1jk0B.421.200 read from T0547.t2k.many.frag # adding 1jk0B to template set # found chain 1jk0B in template set Warning: unaligning (T0547)G421 (1jk0B)T201 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1jk0B)K204 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1jk0B)M206 because L (left) conformation "forbidden" or filtered. T0547 422 :DK 1jk0B 202 :DK T0547 425 :N 1jk0B 205 :I T0547 427 :ADL 1jk0B 207 :PGL Number of specific fragments extracted= 3 number of extra gaps= 3 total=45439 # 1hyoA.421.208 read from T0547.t2k.many.frag # found chain 1hyoA in training set Warning: unaligning (T0547)G421 (1hyoA)G207 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 because of BadResidue code BAD_PEPTIDE in next template residue (1hyoA)N210 Warning: unaligning (T0547)Q424 because of BadResidue code BAD_PEPTIDE at template residue (1hyoA)N210 Warning: unaligning (T0547)D428 (1hyoA)E214 because D (zeta) conformation "forbidden" or filtered. T0547 422 :D 1hyoA 208 :P T0547 425 :NPA 1hyoA 211 :RFG T0547 429 :L 1hyoA 215 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=45442 # 1knwA.422.382 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P426 (1knwA)N387 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1knwA)S388 because L (left) conformation "forbidden" or filtered. T0547 422 :DKQN 1knwA 383 :SSNY T0547 428 :DLL 1knwA 389 :RPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45444 # 1xcrA.422.220 read from T0547.t2k.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)Q424 (1xcrA)E222 because E (beta_S) conformation "forbidden" or filtered. T0547 422 :DK 1xcrA 220 :PA T0547 425 :NPADLL 1xcrA 223 :FSSCPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45446 # 1ui0A.422.162 read from T0547.t2k.many.frag # found chain 1ui0A in training set Warning: unaligning (T0547)A427 (1ui0A)G168 because T (delta_L) conformation "forbidden" or filtered. T0547 422 :DKQNP 1ui0A 163 :PSRAP T0547 428 :DLL 1ui0A 169 :SPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=45448 # 3nul.422.34 read from T0547.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0547)D422 (3nul)S36 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQNPADLL 3nul 37 :AKFPQLKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=45449 # 2fnuA.422.290 read from T0547.t2k.many.frag # found chain 2fnuA in training set T0547 422 :DKQNPADLL 2fnuA 291 :HQKFFTCKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=45450 # 1u2cA.422.207 read from T0547.t2k.many.frag # found chain 1u2cA in template set Warning: unaligning (T0547)D422 (1u2cA)N265 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1u2cA)P270 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQNP 1u2cA 266 :QNSV T0547 428 :DLL 1u2cA 271 :DIR Number of specific fragments extracted= 2 number of extra gaps= 2 total=45452 # 2fh5A.422.29 read from T0547.t2k.many.frag # found chain 2fh5A in template set Warning: unaligning (T0547)Q424 (2fh5A)D23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2fh5A)C25 because L (left) conformation "forbidden" or filtered. T0547 422 :DK 2fh5A 21 :VS T0547 425 :N 2fh5A 24 :S T0547 427 :ADLL 2fh5A 26 :TGPV Number of specific fragments extracted= 3 number of extra gaps= 2 total=45455 # 1cby.422.69 read from T0547.t2k.many.frag # found chain 1cby in template set T0547 422 :DKQNPADLL 1cby 70 :PLNLNFNFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45456 # 1ew0A.422.65 read from T0547.t2k.many.frag # found chain 1ew0A in training set Warning: unaligning (T0547)Q424 (1ew0A)P189 because C (cis) conformation "forbidden" or filtered. T0547 422 :DK 1ew0A 187 :PE T0547 425 :NPADLL 1ew0A 190 :YRHEHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=45458 # 7odcA.422.393 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N425 (7odcA)F397 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (7odcA)N398 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. T0547 422 :DKQ 7odcA 394 :AST T0547 428 :DLL 7odcA 400 :FQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=45460 # 1fiuA.422.190 read from T0547.t2k.many.frag # found chain 1fiuA in training set T0547 422 :DKQNPADLL 1fiuA 191 :RSDRAQNAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=45461 # 1wdpA.422.351 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)N425 (1wdpA)A355 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1wdpA)K356 because L (left) conformation "forbidden" or filtered. T0547 422 :DKQ 1wdpA 352 :PSD T0547 427 :ADLL 1wdpA 357 :SGPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=45463 # 1kcqA.422.44 read from T0547.t2k.many.frag # found chain 1kcqA in training set T0547 422 :DKQNPADLL 1kcqA 202 :GSNSNRYER Number of specific fragments extracted= 1 number of extra gaps= 0 total=45464 # 1cnv.422.196 read from T0547.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)P426 (1cnv)I201 because G (3-10) conformation "forbidden" or filtered. T0547 422 :DKQN 1cnv 197 :STGN T0547 427 :ADLL 1cnv 202 :QRIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=45466 # 1ir6A.422.214 read from T0547.t2k.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)Q424 (1ir6A)G256 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1ir6A)Y257 because P (beta_P) conformation "forbidden" or filtered. T0547 422 :DK 1ir6A 254 :AV T0547 426 :PADLL 1ir6A 258 :TGKAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=45468 # 1xkiA.422.114 read from T0547.t2k.many.frag # found chain 1xkiA in training set Warning: unaligning (T0547)P426 (1xkiA)N123 because G (3-10) conformation "forbidden" or filtered. T0547 422 :DKQN 1xkiA 119 :DPKN T0547 427 :ADLL 1xkiA 124 :LEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45470 # 1xqwA.422.184 read from T0547.t2k.many.frag # found chain 1xqwA in template set T0547 422 :DKQNPADLL 1xqwA 185 :SEDWPPEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45471 # 1hxn.422.91 read from T0547.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)N425 (1hxn)V310 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L429 (1hxn)P314 because C (cis) conformation "forbidden" or filtered. T0547 422 :DKQ 1hxn 307 :YTL T0547 426 :PAD 1hxn 311 :NGY T0547 430 :L 1hxn 315 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=45474 # 1qqfA.422.232 read from T0547.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0547)Q424 (1qqfA)K1244 because L (left) conformation "forbidden" or filtered. T0547 422 :DK 1qqfA 1242 :LL T0547 425 :NPADLL 1qqfA 1245 :DFDSVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=45476 # 1guxB.422.78 read from T0547.t2k.many.frag # found chain 1guxB in template set Warning: unaligning (T0547)Q424 (1guxB)N716 because L (left) conformation "forbidden" or filtered. T0547 422 :DK 1guxB 714 :VK T0547 425 :NPADLL 1guxB 717 :IDLKFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=45478 # 1u02A.422.119 read from T0547.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0547)N425 (1u02A)G123 because P (beta_P) conformation "forbidden" or filtered. T0547 422 :DKQ 1u02A 120 :GLM T0547 426 :PADLL 1u02A 124 :ADMKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=45480 # 1w99A.422.213 read from T0547.t2k.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)Q424 (1w99A)P299 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1w99A)S301 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1w99A)S303 because P (beta_P) conformation "forbidden" or filtered. T0547 422 :DK 1w99A 297 :ES T0547 425 :N 1w99A 300 :S T0547 427 :A 1w99A 302 :K T0547 429 :LL 1w99A 304 :IA Number of specific fragments extracted= 4 number of extra gaps= 3 total=45484 # 1y7tA.422.295 read from T0547.t2k.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)D422 (1y7tA)G301 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1y7tA)L302 because P (beta_P) conformation "forbidden" or filtered. T0547 424 :QNPADLL 1y7tA 303 :EINEFAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=45485 # 1khxA.422.77 read from T0547.t2k.many.frag # found chain 1khxA in training set T0547 422 :DKQNPADLL 1khxA 318 :NVNRNATVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45486 # 2exrA.422.323 read from T0547.t2k.many.frag # found chain 2exrA in training set T0547 422 :DKQNPADLL 2exrA 324 :DSDSNSTID Number of specific fragments extracted= 1 number of extra gaps= 0 total=45487 # 1w61A.422.232 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)D422 (1w61A)S233 because Y (epsilon') conformation "forbidden" or filtered. T0547 423 :KQNPADLL 1w61A 234 :VQNLSRLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=45488 # 1jk0B.422.201 read from T0547.t2k.many.frag # found chain 1jk0B in template set Warning: unaligning (T0547)Q424 (1jk0B)K204 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1jk0B)I205 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1jk0B)M206 because L (left) conformation "forbidden" or filtered. T0547 422 :DK 1jk0B 202 :DK T0547 427 :ADLL 1jk0B 207 :PGLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=45490 # 1ah7.422.134 read from T0547.t2k.many.frag # found chain 1ah7 in training set Warning: unaligning (T0547)N425 (1ah7)P138 because C (cis) conformation "forbidden" or filtered. T0547 422 :DKQ 1ah7 135 :LSY T0547 426 :PADLL 1ah7 139 :QGFHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=45492 # 1uocA.422.175 read from T0547.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)D422 (1uocA)N176 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1uocA)N182 because Y (epsilon') conformation "forbidden" or filtered. T0547 423 :KQNPA 1uocA 177 :DSMPN T0547 429 :LL 1uocA 183 :KE Number of specific fragments extracted= 2 number of extra gaps= 2 total=45494 # 1i4wA.422.194 read from T0547.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)D428 (1i4wA)R189 because P (beta_P) conformation "forbidden" or filtered. T0547 422 :DKQNPA 1i4wA 183 :RPGMHS T0547 429 :LL 1i4wA 190 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=45496 # 1knwA.423.383 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K423 (1knwA)S384 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1knwA)N387 because L (left) conformation "forbidden" or filtered. T0547 424 :QN 1knwA 385 :NY T0547 427 :ADLLA 1knwA 388 :SRPLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=45498 # 1ui0A.423.163 read from T0547.t2k.many.frag # found chain 1ui0A in training set Warning: unaligning (T0547)K423 (1ui0A)S164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1ui0A)G168 because T (delta_L) conformation "forbidden" or filtered. T0547 424 :QNP 1ui0A 165 :RAP T0547 428 :DLLA 1ui0A 169 :SPKH Number of specific fragments extracted= 2 number of extra gaps= 2 total=45500 # 1u2cA.423.208 read from T0547.t2k.many.frag # found chain 1u2cA in template set T0547 423 :KQNPADLLA 1u2cA 266 :QNSVPDIRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=45501 # 2fnuA.423.291 read from T0547.t2k.many.frag # found chain 2fnuA in training set T0547 423 :KQNPADLLA 2fnuA 292 :QKFFTCKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45502 # 1xcrA.423.221 read from T0547.t2k.many.frag # found chain 1xcrA in training set T0547 423 :KQNPADLLA 1xcrA 221 :AEFSSCPLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45503 # 2fh5A.423.30 read from T0547.t2k.many.frag # found chain 2fh5A in template set Warning: unaligning (T0547)Q424 (2fh5A)D23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2fh5A)C25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (2fh5A)G27 because S (epsilon) conformation "forbidden" or filtered. T0547 423 :K 2fh5A 22 :S T0547 425 :N 2fh5A 24 :S T0547 427 :A 2fh5A 26 :T T0547 429 :LLA 2fh5A 28 :PVN Number of specific fragments extracted= 4 number of extra gaps= 3 total=45507 # 1cby.423.70 read from T0547.t2k.many.frag # found chain 1cby in template set Warning: unaligning (T0547)N425 (1cby)L73 because L (left) conformation "forbidden" or filtered. T0547 423 :KQ 1cby 71 :LN T0547 426 :PADLLA 1cby 74 :NFNFEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=45509 # 1fiuA.423.191 read from T0547.t2k.many.frag # found chain 1fiuA in training set T0547 423 :KQNPADLLA 1fiuA 192 :SDRAQNARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45510 # 3nul.423.35 read from T0547.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0547)D428 (3nul)L42 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQNPA 3nul 37 :AKFPQ T0547 429 :LLA 3nul 43 :KPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=45512 # 1ew0A.423.66 read from T0547.t2k.many.frag # found chain 1ew0A in training set Warning: unaligning (T0547)Q424 (1ew0A)P189 because C (cis) conformation "forbidden" or filtered. T0547 423 :K 1ew0A 188 :E T0547 425 :NPADLLA 1ew0A 190 :YRHEHDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=45514 # 1wdpA.423.352 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)P426 (1wdpA)K356 because L (left) conformation "forbidden" or filtered. T0547 423 :KQN 1wdpA 353 :SDA T0547 427 :ADLLA 1wdpA 357 :SGPQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=45516 # 1qqfA.423.233 read from T0547.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0547)Q424 (1qqfA)K1244 because L (left) conformation "forbidden" or filtered. T0547 423 :K 1qqfA 1243 :L T0547 425 :NPADLLA 1qqfA 1245 :DFDSVPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=45518 # 1hxn.423.92 read from T0547.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)N425 (1hxn)V310 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1hxn)G312 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L429 (1hxn)P314 because C (cis) conformation "forbidden" or filtered. T0547 423 :KQ 1hxn 308 :TL T0547 426 :P 1hxn 311 :N T0547 428 :D 1hxn 313 :Y T0547 430 :LA 1hxn 315 :KR Number of specific fragments extracted= 4 number of extra gaps= 3 total=45522 # 1w99A.423.214 read from T0547.t2k.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)Q424 (1w99A)P299 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1w99A)S301 because G (3-10) conformation "forbidden" or filtered. T0547 423 :K 1w99A 298 :S T0547 425 :N 1w99A 300 :S T0547 427 :ADLLA 1w99A 302 :KSIAA Number of specific fragments extracted= 3 number of extra gaps= 2 total=45525 # 1cnv.423.197 read from T0547.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)Q424 (1cnv)G199 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1cnv)I201 because G (3-10) conformation "forbidden" or filtered. T0547 423 :K 1cnv 198 :T T0547 425 :N 1cnv 200 :N T0547 427 :ADLLA 1cnv 202 :QRIRN Number of specific fragments extracted= 3 number of extra gaps= 2 total=45528 # 1xqwA.423.185 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)K423 (1xqwA)E186 because G (3-10) conformation "forbidden" or filtered. T0547 424 :QNPADLLA 1xqwA 187 :DWPPEVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=45529 # 1guxB.423.79 read from T0547.t2k.many.frag # found chain 1guxB in template set Warning: unaligning (T0547)A427 (1guxB)L719 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1guxB)K720 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQNP 1guxB 715 :KNID T0547 429 :LLA 1guxB 721 :FKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=45531 # 1jk0B.423.202 read from T0547.t2k.many.frag # found chain 1jk0B in template set Warning: unaligning (T0547)K423 (1jk0B)K203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1jk0B)M206 because L (left) conformation "forbidden" or filtered. T0547 424 :QN 1jk0B 204 :KI T0547 427 :ADLLA 1jk0B 207 :PGLAM Number of specific fragments extracted= 2 number of extra gaps= 2 total=45533 # 1ah7.423.135 read from T0547.t2k.many.frag # found chain 1ah7 in training set Warning: unaligning (T0547)N425 (1ah7)P138 because C (cis) conformation "forbidden" or filtered. T0547 423 :KQ 1ah7 136 :SY T0547 426 :PADLLA 1ah7 139 :QGFHSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=45535 # 1u02A.423.120 read from T0547.t2k.many.frag # found chain 1u02A in template set T0547 423 :KQNPADLLA 1u02A 121 :LMGADMKPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=45536 # 1khxA.423.78 read from T0547.t2k.many.frag # found chain 1khxA in training set T0547 423 :KQNPADLLA 1khxA 319 :VNRNATVEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=45537 # 1uocA.423.176 read from T0547.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)D428 (1uocA)N182 because Y (epsilon') conformation "forbidden" or filtered. T0547 423 :KQNPA 1uocA 177 :DSMPN T0547 429 :LLA 1uocA 183 :KED Number of specific fragments extracted= 2 number of extra gaps= 1 total=45539 # 2exrA.423.324 read from T0547.t2k.many.frag # found chain 2exrA in training set Warning: unaligning (T0547)N425 (2exrA)S327 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQ 2exrA 325 :SD T0547 426 :PADLLA 2exrA 328 :NSTIDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=45541 1knyA expands to /projects/compbio/data/pdb/1kny.pdb.gz 1knyA:# 1knyA.423.198 read from T0547.t2k.many.frag # adding 1knyA to template set # found chain 1knyA in template set Warning: unaligning (T0547)D428 (1knyA)G204 because T (delta_L) conformation "forbidden" or filtered. T0547 423 :KQNPA 1knyA 199 :SDLPS T0547 429 :LLA 1knyA 205 :YDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=45543 # 1ir6A.423.215 read from T0547.t2k.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)D428 (1ir6A)K260 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQNPA 1ir6A 255 :VGYTG T0547 429 :LLA 1ir6A 261 :AVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=45545 # 1xkiA.423.115 read from T0547.t2k.many.frag # found chain 1xkiA in training set Warning: unaligning (T0547)P426 (1xkiA)N123 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1xkiA)L124 because L (left) conformation "forbidden" or filtered. T0547 423 :KQN 1xkiA 120 :PKN T0547 428 :DLLA 1xkiA 125 :EALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=45547 # 7odcA.423.394 read from T0547.t2k.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P426 (7odcA)N398 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A431 (7odcA)P403 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQN 7odcA 395 :STF T0547 428 :DLL 7odcA 400 :FQR Number of specific fragments extracted= 2 number of extra gaps= 2 total=45549 # 1y7tA.423.296 read from T0547.t2k.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)K423 (1y7tA)L302 because P (beta_P) conformation "forbidden" or filtered. T0547 424 :QNPADLLA 1y7tA 303 :EINEFARK Number of specific fragments extracted= 1 number of extra gaps= 1 total=45550 # 1w5qA.423.235 read from T0547.t2k.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)N425 (1w5qA)N238 because E (beta_S) conformation "forbidden" or filtered. T0547 423 :KQ 1w5qA 236 :PA T0547 426 :PADLLA 1w5qA 239 :SDEALH Number of specific fragments extracted= 2 number of extra gaps= 1 total=45552 # 1xppA.423.28 read from T0547.t2k.many.frag # found chain 1xppA in training set T0547 423 :KQNPADLLA 1xppA 27 :NYDNTLLRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=45553 # 1ui0A.424.164 read from T0547.t2k.many.frag # found chain 1ui0A in training set Warning: unaligning (T0547)N425 (1ui0A)A166 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1ui0A)G168 because T (delta_L) conformation "forbidden" or filtered. T0547 424 :Q 1ui0A 165 :R T0547 426 :P 1ui0A 167 :P T0547 428 :DLLAI 1ui0A 169 :SPKHL Number of specific fragments extracted= 3 number of extra gaps= 2 total=45556 # 2fnuA.424.292 read from T0547.t2k.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)N425 (2fnuA)F294 because G (3-10) conformation "forbidden" or filtered. T0547 424 :Q 2fnuA 293 :K T0547 426 :PADLLAI 2fnuA 295 :FTCKKLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=45558 # 2fh5A.424.31 read from T0547.t2k.many.frag # found chain 2fh5A in template set Warning: unaligning (T0547)Q424 (2fh5A)D23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2fh5A)C25 because L (left) conformation "forbidden" or filtered. T0547 425 :N 2fh5A 24 :S T0547 427 :ADLLAI 2fh5A 26 :TGPVNA Number of specific fragments extracted= 2 number of extra gaps= 2 total=45560 # 1u2cA.424.209 read from T0547.t2k.many.frag # found chain 1u2cA in template set T0547 424 :QNPADLLAI 1u2cA 267 :NSVPDIRGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=45561 # 1knwA.424.384 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N425 (1knwA)Y386 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1knwA)N387 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1knwA)S388 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1knwA)R389 because E (beta_S) conformation "forbidden" or filtered. T0547 424 :Q 1knwA 385 :N T0547 429 :LLAI 1knwA 390 :PLLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=45563 # 1qqfA.424.234 read from T0547.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0547)Q424 (1qqfA)K1244 because L (left) conformation "forbidden" or filtered. T0547 425 :NPADLLAI 1qqfA 1245 :DFDSVPPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=45564 # 1cby.424.71 read from T0547.t2k.many.frag # found chain 1cby in template set Warning: unaligning (T0547)N425 (1cby)L73 because L (left) conformation "forbidden" or filtered. T0547 424 :Q 1cby 72 :N T0547 426 :PADLLAI 1cby 74 :NFNFEKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=45566 # 1w99A.424.215 read from T0547.t2k.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)Q424 (1w99A)P299 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1w99A)S301 because G (3-10) conformation "forbidden" or filtered. T0547 425 :N 1w99A 300 :S T0547 427 :ADLLAI 1w99A 302 :KSIAAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=45568 # 1xcrA.424.222 read from T0547.t2k.many.frag # found chain 1xcrA in training set T0547 424 :QNPADLLAI 1xcrA 222 :EFSSCPLNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45569 # 1hxn.424.93 read from T0547.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)L429 (1hxn)P314 because C (cis) conformation "forbidden" or filtered. T0547 424 :QNPAD 1hxn 309 :LVNGY T0547 430 :LAI 1hxn 315 :KRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45571 # 1fiuA.424.192 read from T0547.t2k.many.frag # found chain 1fiuA in training set T0547 424 :QNPADLLAI 1fiuA 193 :DRAQNARSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45572 # 1ew0A.424.67 read from T0547.t2k.many.frag # found chain 1ew0A in training set Warning: unaligning (T0547)Q424 (1ew0A)P189 because C (cis) conformation "forbidden" or filtered. T0547 425 :NPADLLAI 1ew0A 190 :YRHEHDGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=45573 # 1guxB.424.80 read from T0547.t2k.many.frag # found chain 1guxB in template set Warning: unaligning (T0547)Q424 (1guxB)N716 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1guxB)L719 because D (zeta) conformation "forbidden" or filtered. T0547 425 :NP 1guxB 717 :ID T0547 428 :DLLAI 1guxB 720 :KFKII Number of specific fragments extracted= 2 number of extra gaps= 2 total=45575 # 1wdpA.424.353 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)P426 (1wdpA)K356 because L (left) conformation "forbidden" or filtered. T0547 424 :QN 1wdpA 354 :DA T0547 427 :ADLLAI 1wdpA 357 :SGPQEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45577 # 3nul.424.36 read from T0547.t2k.many.frag # found chain 3nul in training set T0547 424 :QNPADLLAI 3nul 38 :KFPQLKPQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45578 # 1knyA.424.199 read from T0547.t2k.many.frag # found chain 1knyA in template set Warning: unaligning (T0547)D428 (1knyA)G204 because T (delta_L) conformation "forbidden" or filtered. T0547 424 :QNPA 1knyA 200 :DLPS T0547 429 :LLAI 1knyA 205 :YDHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45580 # 1xqwA.424.186 read from T0547.t2k.many.frag # found chain 1xqwA in template set T0547 424 :QNPADLLAI 1xqwA 187 :DWPPEVLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45581 # 1ah7.424.136 read from T0547.t2k.many.frag # found chain 1ah7 in training set Warning: unaligning (T0547)N425 (1ah7)P138 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1ah7)G140 because T (delta_L) conformation "forbidden" or filtered. T0547 424 :Q 1ah7 137 :Y T0547 426 :P 1ah7 139 :Q T0547 428 :DLLAI 1ah7 141 :FHSKY Number of specific fragments extracted= 3 number of extra gaps= 2 total=45584 # 1ru4A.424.32 read from T0547.t2k.many.frag # found chain 1ru4A in training set T0547 424 :QNPADLLAI 1ru4A 58 :NAPMSFSAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45585 # 1u02A.424.121 read from T0547.t2k.many.frag # found chain 1u02A in template set T0547 424 :QNPADLLAI 1u02A 122 :MGADMKPKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45586 # 1ei7A.424.70 read from T0547.t2k.many.frag # found chain 1ei7A in template set T0547 424 :QNPADLLAI 1ei7A 71 :RYNAVLDPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45587 # 1uocA.424.177 read from T0547.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)D428 (1uocA)N182 because Y (epsilon') conformation "forbidden" or filtered. T0547 424 :QNPA 1uocA 178 :SMPN T0547 429 :LLAI 1uocA 183 :KEDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=45589 # 1xppA.424.29 read from T0547.t2k.many.frag # found chain 1xppA in training set T0547 424 :QNPADLLAI 1xppA 28 :YDNTLLRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45590 # 2f06A.424.80 read from T0547.t2k.many.frag # found chain 2f06A in template set Warning: unaligning (T0547)A427 (2f06A)G81 because T (delta_L) conformation "forbidden" or filtered. T0547 424 :QNP 2f06A 78 :NVP T0547 428 :DLLAI 2f06A 82 :ALAKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=45592 # 1jk0B.424.203 read from T0547.t2k.many.frag # found chain 1jk0B in template set Warning: unaligning (T0547)Q424 (1jk0B)K204 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1jk0B)M206 because L (left) conformation "forbidden" or filtered. T0547 425 :N 1jk0B 205 :I T0547 427 :ADLLAI 1jk0B 207 :PGLAMA Number of specific fragments extracted= 2 number of extra gaps= 2 total=45594 # 1s3rA.424.314 read from T0547.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1s3rA)K316 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1s3rA)K316 T0547 424 :QNP 1s3rA 312 :SKS T0547 429 :LLAI 1s3rA 317 :VQAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=45596 # 1yb3A.424.124 read from T0547.t2k.many.frag # found chain 1yb3A in training set T0547 424 :QNPADLLAI 1yb3A 117 :EHPISGDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=45597 # 1cnv.424.198 read from T0547.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)P426 (1cnv)I201 because G (3-10) conformation "forbidden" or filtered. T0547 424 :QN 1cnv 199 :GN T0547 427 :ADLLAI 1cnv 202 :QRIRNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=45599 # 2a14A.424.118 read from T0547.t2k.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)Q424 (2a14A)G119 because T (delta_L) conformation "forbidden" or filtered. T0547 425 :NPADLLAI 2a14A 120 :NSGRWEEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=45600 # 1rjdA.424.305 read from T0547.t2k.many.frag # found chain 1rjdA in training set T0547 424 :QNPADLLAI 1rjdA 306 :QFLDELEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45601 # 1hxn.425.94 read from T0547.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)L429 (1hxn)P314 because C (cis) conformation "forbidden" or filtered. T0547 425 :NPAD 1hxn 310 :VNGY T0547 430 :LAIQ 1hxn 315 :KRLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=45603 # 1ui0A.425.165 read from T0547.t2k.many.frag # found chain 1ui0A in training set T0547 425 :NPADLLAIQ 1ui0A 166 :APGSPKHLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=45604 # 2fnuA.425.293 read from T0547.t2k.many.frag # found chain 2fnuA in training set T0547 425 :NPADLLAIQ 2fnuA 294 :FFTCKKLIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45605 # 2fh5A.425.32 read from T0547.t2k.many.frag # found chain 2fh5A in template set Warning: unaligning (T0547)P426 (2fh5A)C25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (2fh5A)T26 because G (3-10) conformation "forbidden" or filtered. T0547 425 :N 2fh5A 24 :S T0547 428 :DLLAIQ 2fh5A 27 :GPVNAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45607 # 1u2cA.425.210 read from T0547.t2k.many.frag # found chain 1u2cA in template set T0547 425 :NPADLLAIQ 1u2cA 268 :SVPDIRGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45608 # 1w99A.425.216 read from T0547.t2k.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)P426 (1w99A)S301 because G (3-10) conformation "forbidden" or filtered. T0547 425 :N 1w99A 300 :S T0547 427 :ADLLAIQ 1w99A 302 :KSIAALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=45610 # 1qqfA.425.235 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 425 :NPADLLAIQ 1qqfA 1245 :DFDSVPPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=45611 # 1cby.425.72 read from T0547.t2k.many.frag # found chain 1cby in template set Warning: unaligning (T0547)N425 (1cby)L73 because L (left) conformation "forbidden" or filtered. T0547 426 :PADLLAIQ 1cby 74 :NFNFEKAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=45612 # 1guxB.425.81 read from T0547.t2k.many.frag # found chain 1guxB in template set Warning: unaligning (T0547)D428 (1guxB)K720 because P (beta_P) conformation "forbidden" or filtered. T0547 425 :NPA 1guxB 717 :IDL T0547 429 :LLAIQ 1guxB 721 :FKIIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=45614 # 1xcrA.425.223 read from T0547.t2k.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)I432 (1xcrA)S230 because Y (epsilon') conformation "forbidden" or filtered. T0547 425 :NPADLLA 1xcrA 223 :FSSCPLN T0547 433 :Q 1xcrA 231 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=45616 # 1fiuA.425.193 read from T0547.t2k.many.frag # found chain 1fiuA in training set T0547 425 :NPADLLAIQ 1fiuA 194 :RAQNARSEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=45617 # 1s3rA.425.315 read from T0547.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1s3rA)K316 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1s3rA)K316 T0547 425 :NP 1s3rA 313 :KS T0547 429 :LLAIQ 1s3rA 317 :VQAAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=45619 # 1knyA.425.200 read from T0547.t2k.many.frag # found chain 1knyA in template set Warning: unaligning (T0547)N425 (1knyA)L201 because P (beta_P) conformation "forbidden" or filtered. T0547 426 :PADLLAIQ 1knyA 202 :PSGYDHLC Number of specific fragments extracted= 1 number of extra gaps= 1 total=45620 # 1knwA.425.385 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N425 (1knwA)Y386 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1knwA)N387 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1knwA)S388 because L (left) conformation "forbidden" or filtered. T0547 428 :DLLAIQ 1knwA 389 :RPLLPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=45621 # 1ew0A.425.68 read from T0547.t2k.many.frag # found chain 1ew0A in training set T0547 425 :NPADLLAIQ 1ew0A 190 :YRHEHDGYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45622 # 1ei7A.425.71 read from T0547.t2k.many.frag # found chain 1ei7A in template set Warning: unaligning (T0547)N425 (1ei7A)Y72 because G (3-10) conformation "forbidden" or filtered. T0547 426 :PADLLAIQ 1ei7A 73 :NAVLDPLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=45623 # 2f06A.425.81 read from T0547.t2k.many.frag # found chain 2f06A in template set Warning: unaligning (T0547)A427 (2f06A)G81 because T (delta_L) conformation "forbidden" or filtered. T0547 425 :NP 2f06A 79 :VP T0547 428 :DLLAIQ 2f06A 82 :ALAKVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45625 # 1ru4A.425.33 read from T0547.t2k.many.frag # found chain 1ru4A in training set Warning: unaligning (T0547)A427 (1ru4A)M61 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1ru4A)S62 because P (beta_P) conformation "forbidden" or filtered. T0547 425 :NP 1ru4A 59 :AP T0547 429 :LLAIQ 1ru4A 63 :FSAAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=45627 # 1wdpA.425.354 read from T0547.t2k.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)P426 (1wdpA)K356 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1wdpA)G358 because D (zeta) conformation "forbidden" or filtered. T0547 425 :N 1wdpA 355 :A T0547 427 :A 1wdpA 357 :S T0547 429 :LLAIQ 1wdpA 359 :PQELV Number of specific fragments extracted= 3 number of extra gaps= 2 total=45630 # 1ah7.425.137 read from T0547.t2k.many.frag # found chain 1ah7 in training set Warning: unaligning (T0547)N425 (1ah7)P138 because C (cis) conformation "forbidden" or filtered. T0547 426 :PADLLAIQ 1ah7 139 :QGFHSKYE Number of specific fragments extracted= 1 number of extra gaps= 1 total=45631 # 1vqsA.425.22 read from T0547.t2k.many.frag # found chain 1vqsA in training set Warning: unaligning (T0547)N425 because of BadResidue code BAD_PEPTIDE at template residue (1vqsA)K11 T0547 426 :PADLLAIQ 1vqsA 12 :NGAIPAYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=45632 # 1uocA.425.178 read from T0547.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)D428 (1uocA)N182 because Y (epsilon') conformation "forbidden" or filtered. T0547 425 :NPA 1uocA 179 :MPN T0547 429 :LLAIQ 1uocA 183 :KEDFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=45634 # 2bduA.425.260 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)P426 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bduA)D263 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bduA)D263 Warning: unaligning (T0547)D428 (2bduA)R264 because L (left) conformation "forbidden" or filtered. T0547 425 :N 2bduA 261 :L T0547 429 :LLAIQ 2bduA 265 :VDELL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45636 # 1u02A.425.122 read from T0547.t2k.many.frag # found chain 1u02A in template set T0547 425 :NPADLLAIQ 1u02A 123 :GADMKPKLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=45637 # 1o8bA.425.174 read from T0547.t2k.many.frag # found chain 1o8bA in training set T0547 425 :NPADLLAIQ 1o8bA 175 :EILDPIAME Number of specific fragments extracted= 1 number of extra gaps= 0 total=45638 # 3nul.425.37 read from T0547.t2k.many.frag # found chain 3nul in training set T0547 425 :NPADLLAIQ 3nul 39 :FPQLKPQEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=45639 # 1yb3A.425.125 read from T0547.t2k.many.frag # found chain 1yb3A in training set T0547 425 :NPADLLAIQ 1yb3A 118 :HPISGDEVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=45640 1wraA expands to /projects/compbio/data/pdb/1wra.pdb.gz 1wraA:Skipped atom 863, because occupancy 0.500 <= existing 0.500 in 1wraA Skipped atom 2168, because occupancy 0.500 <= existing 0.500 in 1wraA Skipped atom 2170, because occupancy 0.500 <= existing 0.500 in 1wraA Skipped atom 2172, because occupancy 0.500 <= existing 0.500 in 1wraA Skipped atom 2174, because occupancy 0.500 <= existing 0.500 in 1wraA Skipped atom 2176, because occupancy 0.500 <= existing 0.500 in 1wraA Skipped atom 2178, because occupancy 0.500 <= existing 0.500 in 1wraA # 1wraA.425.257 read from T0547.t2k.many.frag # adding 1wraA to template set # found chain 1wraA in template set Warning: unaligning (T0547)P426 (1wraA)N285 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1wraA)G286 because S (epsilon) conformation "forbidden" or filtered. T0547 425 :N 1wraA 284 :K T0547 428 :DLLAIQ 1wraA 287 :VDSEYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=45642 # 2d1eA.425.125 read from T0547.t2k.many.frag # found chain 2d1eA in training set Warning: unaligning (T0547)P426 (2d1eA)R127 because L (left) conformation "forbidden" or filtered. T0547 425 :N 2d1eA 126 :D T0547 427 :ADLLAIQ 2d1eA 128 :QLPAAYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=45644 # 1su8A.425.584 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)P426 (1su8A)I586 because G (3-10) conformation "forbidden" or filtered. T0547 425 :N 1su8A 585 :P T0547 427 :ADLLAIQ 1su8A 587 :TGSLPVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=45646 # 1u2cA.426.211 read from T0547.t2k.many.frag # found chain 1u2cA in template set Warning: unaligning (T0547)A427 (1u2cA)P270 because P (beta_P) conformation "forbidden" or filtered. T0547 426 :P 1u2cA 269 :V T0547 428 :DLLAIQD 1u2cA 271 :DIRGVET Number of specific fragments extracted= 2 number of extra gaps= 1 total=45648 # 1qqfA.426.236 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 426 :PADLLAIQD 1qqfA 1246 :FDSVPPVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=45649 # 2fnuA.426.294 read from T0547.t2k.many.frag # found chain 2fnuA in training set T0547 426 :PADLLAIQD 2fnuA 295 :FTCKKLILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45650 # 1hxn.426.95 read from T0547.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)A427 (1hxn)G312 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L429 (1hxn)P314 because C (cis) conformation "forbidden" or filtered. T0547 426 :P 1hxn 311 :N T0547 428 :D 1hxn 313 :Y T0547 430 :LAIQD 1hxn 315 :KRLEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=45653 # 1w99A.426.217 read from T0547.t2k.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)P426 (1w99A)S301 because G (3-10) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 1w99A 302 :KSIAALEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=45654 # 2fh5A.426.33 read from T0547.t2k.many.frag # found chain 2fh5A in template set Warning: unaligning (T0547)P426 (2fh5A)C25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (2fh5A)G27 because S (epsilon) conformation "forbidden" or filtered. T0547 427 :A 2fh5A 26 :T T0547 429 :LLAIQD 2fh5A 28 :PVNALI Number of specific fragments extracted= 2 number of extra gaps= 2 total=45656 # 1guxB.426.82 read from T0547.t2k.many.frag # found chain 1guxB in template set Warning: unaligning (T0547)D428 (1guxB)K720 because P (beta_P) conformation "forbidden" or filtered. T0547 426 :PA 1guxB 718 :DL T0547 429 :LLAIQD 1guxB 721 :FKIIVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=45658 # 1wraA.426.258 read from T0547.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0547)P426 (1wraA)N285 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1wraA)G286 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1wraA)V287 because P (beta_P) conformation "forbidden" or filtered. T0547 429 :LLAIQD 1wraA 288 :DSEYVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=45659 # 2bduA.426.261 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)P426 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bduA)D263 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bduA)D263 Warning: unaligning (T0547)D428 (2bduA)R264 because L (left) conformation "forbidden" or filtered. T0547 429 :LLAIQD 2bduA 265 :VDELLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=45660 # 1s3rA.426.316 read from T0547.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1s3rA)K316 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1s3rA)K316 T0547 426 :P 1s3rA 314 :S T0547 429 :LLAIQD 1s3rA 317 :VQAAID Number of specific fragments extracted= 2 number of extra gaps= 1 total=45662 # 1o8bA.426.175 read from T0547.t2k.many.frag # found chain 1o8bA in training set T0547 426 :PADLLAIQD 1o8bA 176 :ILDPIAMEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45663 # 1usgA.426.295 read from T0547.t2k.many.frag # found chain 1usgA in training set T0547 426 :PADLLAIQD 1usgA 296 :SDEPLALVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=45664 # 1knyA.426.201 read from T0547.t2k.many.frag # found chain 1knyA in template set T0547 426 :PADLLAIQD 1knyA 202 :PSGYDHLCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=45665 # 1cby.426.73 read from T0547.t2k.many.frag # found chain 1cby in template set T0547 426 :PADLLAIQD 1cby 74 :NFNFEKALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=45666 # 1su8A.426.585 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)P426 (1su8A)I586 because G (3-10) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 1su8A 587 :TGSLPVTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=45667 # 1ui0A.426.166 read from T0547.t2k.many.frag # found chain 1ui0A in training set Warning: unaligning (T0547)A427 (1ui0A)G168 because T (delta_L) conformation "forbidden" or filtered. T0547 426 :P 1ui0A 167 :P T0547 428 :DLLAIQD 1ui0A 169 :SPKHLTW Number of specific fragments extracted= 2 number of extra gaps= 1 total=45669 # 1uocA.426.179 read from T0547.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)A427 (1uocA)N181 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1uocA)N182 because Y (epsilon') conformation "forbidden" or filtered. T0547 426 :P 1uocA 180 :P T0547 429 :LLAIQD 1uocA 183 :KEDFEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=45671 # 1ru4A.426.34 read from T0547.t2k.many.frag # found chain 1ru4A in training set Warning: unaligning (T0547)D428 (1ru4A)S62 because P (beta_P) conformation "forbidden" or filtered. T0547 426 :PA 1ru4A 60 :PM T0547 429 :LLAIQD 1ru4A 63 :FSAAMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=45673 # 1x3mA.426.288 read from T0547.t2k.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)P426 (1x3mA)S276 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1x3mA)S277 because G (3-10) conformation "forbidden" or filtered. T0547 428 :DLLAIQD 1x3mA 278 :DLRVLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=45674 # 1xcrA.426.224 read from T0547.t2k.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)I432 (1xcrA)S230 because Y (epsilon') conformation "forbidden" or filtered. T0547 426 :PADLLA 1xcrA 224 :SSCPLN T0547 433 :QD 1xcrA 231 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=45676 # 1yb3A.426.126 read from T0547.t2k.many.frag # found chain 1yb3A in training set T0547 426 :PADLLAIQD 1yb3A 119 :PISGDEVWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=45677 # 1jhjA.426.5 read from T0547.t2k.many.frag # found chain 1jhjA in training set Warning: unaligning (T0547)A431 (1jhjA)D12 because P (beta_P) conformation "forbidden" or filtered. T0547 426 :PADLL 1jhjA 7 :TPPGA T0547 432 :IQD 1jhjA 13 :PKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=45679 # 1ei7A.426.72 read from T0547.t2k.many.frag # found chain 1ei7A in template set T0547 426 :PADLLAIQD 1ei7A 73 :NAVLDPLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=45680 # 2f06A.426.82 read from T0547.t2k.many.frag # found chain 2f06A in template set Warning: unaligning (T0547)A427 (2f06A)G81 because T (delta_L) conformation "forbidden" or filtered. T0547 426 :P 2f06A 80 :P T0547 428 :DLLAIQD 2f06A 82 :ALAKVLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=45682 # 1e29A.426.65 read from T0547.t2k.many.frag # found chain 1e29A in training set Warning: unaligning (T0547)P426 (1e29A)R66 because G (3-10) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 1e29A 67 :DNVLALVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=45683 # 2d1eA.426.126 read from T0547.t2k.many.frag # found chain 2d1eA in training set Warning: unaligning (T0547)P426 (2d1eA)R127 because L (left) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 2d1eA 128 :QLPAAYQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=45684 # 1vqsA.426.23 read from T0547.t2k.many.frag # found chain 1vqsA in training set T0547 426 :PADLLAIQD 1vqsA 12 :NGAIPAYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=45685 1vraB expands to /projects/compbio/data/pdb/1vra.pdb.gz 1vraB:Skipped atom 1438, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 1440, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 1702, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 1704, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 1817, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 1819, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2236, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2238, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2240, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2242, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2244, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2735, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2737, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2739, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2741, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2743, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2856, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2858, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2860, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2970, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2972, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2974, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2976, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2978, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2980, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2982, because occupancy 0.500 <= existing 0.500 in 1vraB # 1vraB.426.165 read from T0547.t2k.many.frag # adding 1vraB to template set # found chain 1vraB in template set Warning: unaligning (T0547)P426 (1vraB)G362 because T (delta_L) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 1vraB 363 :FSEEEATA Number of specific fragments extracted= 1 number of extra gaps= 1 total=45686 1twfB expands to /projects/compbio/data/pdb/1twf.pdb.gz 1twfB:# 1twfB.426.547 read from T0547.t2k.many.frag # adding 1twfB to template set # found chain 1twfB in template set T0547 426 :PADLLAIQD 1twfB 548 :GTDPMPIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=45687 # 1pb7A.426.202 read from T0547.t2k.many.frag # found chain 1pb7A in training set Warning: unaligning (T0547)D428 (1pb7A)S205 because Y (epsilon') conformation "forbidden" or filtered. T0547 426 :PA 1pb7A 203 :YE T0547 429 :LLAIQD 1pb7A 206 :AAEAIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=45689 # 1qqfA.427.237 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 427 :ADLLAIQDE 1qqfA 1247 :DSVPPVVRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=45690 # 1u2cA.427.212 read from T0547.t2k.many.frag # found chain 1u2cA in template set T0547 427 :ADLLAIQDE 1u2cA 270 :PDIRGVETP Number of specific fragments extracted= 1 number of extra gaps= 0 total=45691 # 1hxn.427.96 read from T0547.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)A427 (1hxn)G312 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1hxn)Y313 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L429 (1hxn)P314 because C (cis) conformation "forbidden" or filtered. T0547 430 :LAIQDE 1hxn 315 :KRLEKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=45692 # 2fnuA.427.295 read from T0547.t2k.many.frag # found chain 2fnuA in training set T0547 427 :ADLLAIQDE 2fnuA 296 :TCKKLILES Number of specific fragments extracted= 1 number of extra gaps= 0 total=45693 # 2bduA.427.262 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2bduA)D263 Warning: unaligning (T0547)D428 (2bduA)R264 because L (left) conformation "forbidden" or filtered. T0547 429 :LLAIQDE 2bduA 265 :VDELLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=45694 # 1jhjA.427.6 read from T0547.t2k.many.frag # found chain 1jhjA in training set T0547 427 :ADLLAIQDE 1jhjA 8 :PPGADPKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45695 # 1wraA.427.259 read from T0547.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0547)A427 (1wraA)G286 because S (epsilon) conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 1wraA 287 :VDSEYVNW Number of specific fragments extracted= 1 number of extra gaps= 1 total=45696 # 1guxB.427.83 read from T0547.t2k.many.frag # found chain 1guxB in template set Warning: unaligning (T0547)A427 (1guxB)L719 because D (zeta) conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 1guxB 720 :KFKIIVTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=45697 # 1o8bA.427.176 read from T0547.t2k.many.frag # found chain 1o8bA in training set T0547 427 :ADLLAIQDE 1o8bA 177 :LDPIAMENA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45698 # 1w99A.427.218 read from T0547.t2k.many.frag # found chain 1w99A in training set T0547 427 :ADLLAIQDE 1w99A 302 :KSIAALEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45699 # 1s3rA.427.317 read from T0547.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1s3rA)K316 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1s3rA)K316 T0547 429 :LLAIQDE 1s3rA 317 :VQAAIDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=45700 # 2fh5A.427.34 read from T0547.t2k.many.frag # found chain 2fh5A in template set T0547 427 :ADLLAIQDE 2fh5A 26 :TGPVNALIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=45701 # 1usgA.427.296 read from T0547.t2k.many.frag # found chain 1usgA in training set T0547 427 :ADLLAIQDE 1usgA 297 :DEPLALVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=45702 # 1yb3A.427.127 read from T0547.t2k.many.frag # found chain 1yb3A in training set T0547 427 :ADLLAIQDE 1yb3A 120 :ISGDEVWDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=45703 # 1uocA.427.180 read from T0547.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)D428 (1uocA)N182 because Y (epsilon') conformation "forbidden" or filtered. T0547 427 :A 1uocA 181 :N T0547 429 :LLAIQDE 1uocA 183 :KEDFEWW Number of specific fragments extracted= 2 number of extra gaps= 1 total=45705 # 1twfB.427.548 read from T0547.t2k.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)A427 (1twfB)T549 because E (beta_S) conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 1twfB 550 :DPMPIITF Number of specific fragments extracted= 1 number of extra gaps= 1 total=45706 # 1su8A.427.586 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 427 :ADLLAIQDE 1su8A 587 :TGSLPVTQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=45707 # 1x3mA.427.289 read from T0547.t2k.many.frag # found chain 1x3mA in template set T0547 427 :ADLLAIQDE 1x3mA 277 :SDLRVLEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45708 # 2d1eA.427.127 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 427 :ADLLAIQDE 2d1eA 128 :QLPAAYQKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45709 # 1aol.427.160 read from T0547.t2k.many.frag # found chain 1aol in template set Warning: unaligning (T0547)A427 (1aol)L169 because E (beta_S) conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 1aol 170 :TTSQAVQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=45710 # 1cby.427.74 read from T0547.t2k.many.frag # found chain 1cby in template set T0547 427 :ADLLAIQDE 1cby 75 :FNFEKALQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=45711 # 1oi0A.427.77 read from T0547.t2k.many.frag # found chain 1oi0A in training set T0547 427 :ADLLAIQDE 1oi0A 78 :RPSEEDLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45712 # 1e29A.427.66 read from T0547.t2k.many.frag # found chain 1e29A in training set T0547 427 :ADLLAIQDE 1e29A 67 :DNVLALVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=45713 # 1r2mA.427.33 read from T0547.t2k.many.frag # found chain 1r2mA in template set T0547 427 :ADLLAIQDE 1r2mA 34 :DTGAIFQAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=45714 2acaA expands to /projects/compbio/data/pdb/2aca.pdb.gz 2acaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2acaA.427.90 read from T0547.t2k.many.frag # adding 2acaA to template set # found chain 2acaA in template set Warning: unaligning (T0547)D428 (2acaA)K92 because D (zeta) conformation "forbidden" or filtered. T0547 427 :A 2acaA 91 :T T0547 429 :LLAIQDE 2acaA 93 :LDSAQSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=45716 1sknP expands to /projects/compbio/data/pdb/1skn.pdb.gz 1sknP:# 1sknP.427.14 read from T0547.t2k.many.frag # adding 1sknP to template set # found chain 1sknP in template set Warning: unaligning (T0547)A427 because first residue in template chain is (1sknP)G456 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1sknP)Q458 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1sknP)Q458 T0547 430 :LAIQDE 1sknP 459 :SKDEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45717 # 1ei7A.427.73 read from T0547.t2k.many.frag # found chain 1ei7A in template set T0547 427 :ADLLAIQDE 1ei7A 74 :AVLDPLVTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45718 # 1gxuA.427.51 read from T0547.t2k.many.frag # found chain 1gxuA in training set Warning: unaligning (T0547)A427 (1gxuA)E52 because P (beta_P) conformation "forbidden" or filtered. T0547 428 :DLL 1gxuA 53 :DPE T0547 432 :IQDE 1gxuA 57 :FLVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=45720 # 1knyA.427.202 read from T0547.t2k.many.frag # found chain 1knyA in template set Warning: unaligning (T0547)D428 (1knyA)G204 because T (delta_L) conformation "forbidden" or filtered. T0547 427 :A 1knyA 203 :S T0547 429 :LLAIQDE 1knyA 205 :YDHLCQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=45722 # 1jqnA.427.744 read from T0547.t2k.many.frag # found chain 1jqnA in template set T0547 427 :ADLLAIQDE 1jqnA 745 :GKQSELEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=45723 # 2bduA.428.263 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)D428 (2bduA)R264 because L (left) conformation "forbidden" or filtered. T0547 429 :LLAIQDEV 2bduA 265 :VDELLEKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=45724 # 1jhjA.428.7 read from T0547.t2k.many.frag # found chain 1jhjA in training set T0547 428 :DLLAIQDEV 1jhjA 9 :PGADPKQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45725 # 1qqfA.428.238 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 428 :DLLAIQDEV 1qqfA 1248 :SVPPVVRWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45726 # 1wraA.428.260 read from T0547.t2k.many.frag # found chain 1wraA in template set T0547 428 :DLLAIQDEV 1wraA 287 :VDSEYVNWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45727 # 2fnuA.428.296 read from T0547.t2k.many.frag # found chain 2fnuA in training set T0547 428 :DLLAIQDEV 2fnuA 297 :CKKLILESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45728 # 1u2cA.428.213 read from T0547.t2k.many.frag # found chain 1u2cA in template set T0547 428 :DLLAIQDEV 1u2cA 271 :DIRGVETPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45729 # 1o8bA.428.177 read from T0547.t2k.many.frag # found chain 1o8bA in training set T0547 428 :DLLAIQDEV 1o8bA 178 :DPIAMENAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=45730 # 1twfB.428.549 read from T0547.t2k.many.frag # found chain 1twfB in template set T0547 428 :DLLAIQDEV 1twfB 550 :DPMPIITFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45731 # 1hxn.428.97 read from T0547.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)L429 (1hxn)P314 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)V436 (1hxn)L321 because G (3-10) conformation "forbidden" or filtered. T0547 428 :D 1hxn 313 :Y T0547 430 :LAIQDE 1hxn 315 :KRLEKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=45733 # 1aol.428.161 read from T0547.t2k.many.frag # found chain 1aol in template set T0547 428 :DLLAIQDEV 1aol 170 :TTSQAVQVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=45734 # 1sknP.428.15 read from T0547.t2k.many.frag # found chain 1sknP in template set Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1sknP)Q458 Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1sknP)Q458 T0547 430 :LAIQDEV 1sknP 459 :SKDEQLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=45735 # 2d1eA.428.128 read from T0547.t2k.many.frag # found chain 2d1eA in training set Warning: unaligning (T0547)D428 (2d1eA)L129 because P (beta_P) conformation "forbidden" or filtered. T0547 429 :LLAIQDEV 2d1eA 130 :PAAYQKSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=45736 # 1guxB.428.84 read from T0547.t2k.many.frag # found chain 1guxB in template set T0547 428 :DLLAIQDEV 1guxB 720 :KFKIIVTAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=45737 # 1usgA.428.297 read from T0547.t2k.many.frag # found chain 1usgA in training set T0547 428 :DLLAIQDEV 1usgA 298 :EPLALVKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45738 # 1s3rA.428.318 read from T0547.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1s3rA)K316 T0547 429 :LLAIQDEV 1s3rA 317 :VQAAIDAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=45739 # 1yb3A.428.128 read from T0547.t2k.many.frag # found chain 1yb3A in training set Warning: unaligning (T0547)D428 (1yb3A)S121 because P (beta_P) conformation "forbidden" or filtered. T0547 429 :LLAIQDEV 1yb3A 122 :GDEVWDRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=45740 # 1oi0A.428.78 read from T0547.t2k.many.frag # found chain 1oi0A in training set T0547 428 :DLLAIQDEV 1oi0A 79 :PSEEDLSLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=45741 # 1w99A.428.219 read from T0547.t2k.many.frag # found chain 1w99A in training set T0547 428 :DLLAIQDEV 1w99A 303 :SIAALEAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45742 # 1su8A.428.587 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 428 :DLLAIQDEV 1su8A 588 :GSLPVTQIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45743 # 2acaA.428.91 read from T0547.t2k.many.frag # found chain 2acaA in template set T0547 428 :DLLAIQDEV 2acaA 92 :KLDSAQSML Number of specific fragments extracted= 1 number of extra gaps= 0 total=45744 # 1x3mA.428.290 read from T0547.t2k.many.frag # found chain 1x3mA in template set T0547 428 :DLLAIQDEV 1x3mA 278 :DLRVLEKAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=45745 # 1gxuA.428.52 read from T0547.t2k.many.frag # found chain 1gxuA in training set T0547 428 :DLL 1gxuA 53 :DPE T0547 432 :IQDEV 1gxuA 57 :FLVQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=45747 # 1uocA.428.181 read from T0547.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)D428 (1uocA)N182 because Y (epsilon') conformation "forbidden" or filtered. T0547 429 :LLAIQDEV 1uocA 183 :KEDFEWWV Number of specific fragments extracted= 1 number of extra gaps= 1 total=45748 # 1r2mA.428.34 read from T0547.t2k.many.frag # found chain 1r2mA in template set T0547 428 :DLLAIQDEV 1r2mA 35 :TGAIFQAHC Number of specific fragments extracted= 1 number of extra gaps= 0 total=45749 # 1nnfA.428.173 read from T0547.t2k.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)D428 (1nnfA)K174 because E (beta_S) conformation "forbidden" or filtered. T0547 429 :LLAIQDEV 1nnfA 175 :NSVALQAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=45750 # 1ei7A.428.74 read from T0547.t2k.many.frag # found chain 1ei7A in template set T0547 428 :DLLAIQDEV 1ei7A 75 :VLDPLVTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45751 # 1uekA.428.245 read from T0547.t2k.many.frag # found chain 1uekA in training set T0547 428 :DLLAIQDEV 1uekA 246 :HARRAAEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45752 # 1cby.428.75 read from T0547.t2k.many.frag # found chain 1cby in template set T0547 428 :DLLAIQDEV 1cby 76 :NFEKALQIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45753 # 1e29A.428.67 read from T0547.t2k.many.frag # found chain 1e29A in training set T0547 428 :DLLAIQDEV 1e29A 68 :NVLALVEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45754 # 2fh5A.428.35 read from T0547.t2k.many.frag # found chain 2fh5A in template set T0547 428 :DLLAIQDEV 2fh5A 27 :GPVNALIRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45755 # 2bduA.429.264 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 429 :LLAIQDEVQ 2bduA 265 :VDELLEKYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=45756 # 1jhjA.429.8 read from T0547.t2k.many.frag # found chain 1jhjA in training set T0547 429 :LLAIQDEVQ 1jhjA 10 :GADPKQLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=45757 # 1qqfA.429.239 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 429 :LLAIQDEVQ 1qqfA 1249 :VPPVVRWLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45758 # 2fnuA.429.297 read from T0547.t2k.many.frag # found chain 2fnuA in training set T0547 429 :LLAIQDEVQ 2fnuA 298 :KKLILESLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=45759 # 1wraA.429.261 read from T0547.t2k.many.frag # found chain 1wraA in template set T0547 429 :LLAIQDEVQ 1wraA 288 :DSEYVNWLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=45760 # 1aol.429.162 read from T0547.t2k.many.frag # found chain 1aol in template set T0547 429 :LLAIQDEVQ 1aol 171 :TSQAVQVCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=45761 # 1twfB.429.550 read from T0547.t2k.many.frag # found chain 1twfB in template set T0547 429 :LLAIQDEVQ 1twfB 551 :PMPIITFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45762 # 1oi0A.429.79 read from T0547.t2k.many.frag # found chain 1oi0A in training set T0547 429 :LLAIQDEVQ 1oi0A 80 :SEEDLSLFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=45763 # 2d1eA.429.129 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 429 :LLAIQDEVQ 2d1eA 130 :PAAYQKSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45764 # 1o8bA.429.178 read from T0547.t2k.many.frag # found chain 1o8bA in training set T0547 429 :LLAIQDEVQ 1o8bA 179 :PIAMENAIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45765 # 1u2cA.429.214 read from T0547.t2k.many.frag # found chain 1u2cA in template set T0547 429 :LLAIQDEVQ 1u2cA 272 :IRGVETPAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=45766 # 1usgA.429.298 read from T0547.t2k.many.frag # found chain 1usgA in training set T0547 429 :LLAIQDEVQ 1usgA 299 :PLALVKDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=45767 # 1s3rA.429.319 read from T0547.t2k.many.frag # found chain 1s3rA in template set T0547 429 :LLAIQDEVQ 1s3rA 317 :VQAAIDAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=45768 # 2acaA.429.92 read from T0547.t2k.many.frag # found chain 2acaA in template set T0547 429 :LLAIQDEVQ 2acaA 93 :LDSAQSMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45769 # 1yb3A.429.129 read from T0547.t2k.many.frag # found chain 1yb3A in training set T0547 429 :LLAIQDEVQ 1yb3A 122 :GDEVWDRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=45770 # 1nnfA.429.174 read from T0547.t2k.many.frag # found chain 1nnfA in training set T0547 429 :LLAIQDEVQ 1nnfA 175 :NSVALQAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45771 # 1r2mA.429.35 read from T0547.t2k.many.frag # found chain 1r2mA in template set T0547 429 :LLAIQDEVQ 1r2mA 36 :GAIFQAHCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45772 # 1gxuA.429.53 read from T0547.t2k.many.frag # found chain 1gxuA in training set T0547 429 :LL 1gxuA 54 :PE T0547 432 :IQDEVQ 1gxuA 57 :FLVQLY Number of specific fragments extracted= 2 number of extra gaps= 0 total=45774 # 1su8A.429.588 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 429 :LLAIQDEVQ 1su8A 589 :SLPVTQILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=45775 # 1x3mA.429.291 read from T0547.t2k.many.frag # found chain 1x3mA in template set T0547 429 :LLAIQDEVQ 1x3mA 279 :LRVLEKAWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=45776 # 1guxB.429.85 read from T0547.t2k.many.frag # found chain 1guxB in template set T0547 429 :LLAIQDEVQ 1guxB 721 :FKIIVTAYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=45777 # 1uekA.429.246 read from T0547.t2k.many.frag # found chain 1uekA in training set T0547 429 :LLAIQDEVQ 1uekA 247 :ARRAAEALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=45778 # 1sknP.429.16 read from T0547.t2k.many.frag # found chain 1sknP in template set Warning: unaligning (T0547)L429 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1sknP)Q458 T0547 430 :LAIQDEVQ 1sknP 459 :SKDEQLAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=45779 # 1flmA.429.50 read from T0547.t2k.many.frag # found chain 1flmA in training set T0547 429 :LLAIQDEVQ 1flmA 51 :MHKTEANVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45780 # 1xe7A.429.26 read from T0547.t2k.many.frag # found chain 1xe7A in training set T0547 429 :LLAIQDEVQ 1xe7A 27 :PSSLQQLIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45781 # 1pv5A.429.10 read from T0547.t2k.many.frag # found chain 1pv5A in training set T0547 429 :LLAIQDEVQ 1pv5A 8 :MRPYRDLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45782 # 1f46A.429.20 read from T0547.t2k.many.frag # found chain 1f46A in training set T0547 429 :LLAIQDEVQ 1f46A 25 :GELLLNSIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=45783 # 1gkmA.429.380 read from T0547.t2k.many.frag # found chain 1gkmA in training set T0547 429 :LLAIQDEVQ 1gkmA 381 :FMIAQVTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45784 # 1rh6A.429.17 read from T0547.t2k.many.frag # found chain 1rh6A in training set T0547 429 :LLAIQDEVQ 1rh6A 18 :LETVRRWVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=45785 # 2cwcA.429.198 read from T0547.t2k.many.frag # found chain 2cwcA in training set T0547 429 :LLAIQDEVQ 2cwcA 199 :HPALRRVVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45786 # 2bduA.430.265 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 430 :LAIQDEVQE 2bduA 266 :DELLEKYMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=45787 # 1qqfA.430.240 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 430 :LAIQDEVQE 1qqfA 1250 :PPVVRWLND Number of specific fragments extracted= 1 number of extra gaps= 0 total=45788 # 1jhjA.430.9 read from T0547.t2k.many.frag # found chain 1jhjA in training set Warning: unaligning (T0547)A431 (1jhjA)D12 because P (beta_P) conformation "forbidden" or filtered. T0547 430 :L 1jhjA 11 :A T0547 432 :IQDEVQE 1jhjA 13 :PKQLERT Number of specific fragments extracted= 2 number of extra gaps= 1 total=45790 # 1aol.430.163 read from T0547.t2k.many.frag # found chain 1aol in template set T0547 430 :LAIQDEVQE 1aol 172 :SQAVQVCKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=45791 # 2fnuA.430.298 read from T0547.t2k.many.frag # found chain 2fnuA in training set T0547 430 :LAIQDEVQE 2fnuA 299 :KLILESLHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=45792 # 1wraA.430.262 read from T0547.t2k.many.frag # found chain 1wraA in template set T0547 430 :LAIQDEVQE 1wraA 289 :SEYVNWLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45793 # 1twfB.430.551 read from T0547.t2k.many.frag # found chain 1twfB in template set T0547 430 :LAIQDEVQE 1twfB 552 :MPIITFLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45794 # 1oi0A.430.80 read from T0547.t2k.many.frag # found chain 1oi0A in training set T0547 430 :LAIQDEVQE 1oi0A 81 :EEDLSLFTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=45795 # 1r2mA.430.36 read from T0547.t2k.many.frag # found chain 1r2mA in template set T0547 430 :LAIQDEVQE 1r2mA 37 :AIFQAHCAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45796 # 2acaA.430.93 read from T0547.t2k.many.frag # found chain 2acaA in template set T0547 430 :LAIQDEVQE 2acaA 94 :DSAQSMLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45797 # 1nnfA.430.175 read from T0547.t2k.many.frag # found chain 1nnfA in training set T0547 430 :LAIQDEVQE 1nnfA 176 :SVALQAVEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45798 # 1o8bA.430.179 read from T0547.t2k.many.frag # found chain 1o8bA in training set T0547 430 :LAIQDEVQE 1o8bA 180 :IAMENAINA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45799 # 1usgA.430.299 read from T0547.t2k.many.frag # found chain 1usgA in training set T0547 430 :LAIQDEVQE 1usgA 300 :LALVKDLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45800 # 1s3rA.430.320 read from T0547.t2k.many.frag # found chain 1s3rA in template set T0547 430 :LAIQDEVQE 1s3rA 318 :QAAIDAVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=45801 # 1uekA.430.247 read from T0547.t2k.many.frag # found chain 1uekA in training set T0547 430 :LAIQDEVQE 1uekA 248 :RRAAEALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45802 # 2d1eA.430.130 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 430 :LAIQDEVQE 2d1eA 131 :AAYQKSLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45803 # 1yb3A.430.130 read from T0547.t2k.many.frag # found chain 1yb3A in training set T0547 430 :LAIQDEVQE 1yb3A 123 :DEVWDRIVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45804 # 1guxB.430.86 read from T0547.t2k.many.frag # found chain 1guxB in template set T0547 430 :LAIQDEVQE 1guxB 722 :KIIVTAYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=45805 # 1gtkA.430.152 read from T0547.t2k.many.frag # found chain 1gtkA in training set T0547 430 :LAIQDEVQE 1gtkA 153 :GTRLSKLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45806 # 1sknP.430.17 read from T0547.t2k.many.frag # found chain 1sknP in template set T0547 430 :LAIQDEVQE 1sknP 459 :SKDEQLASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=45807 # 1e19A.430.176 read from T0547.t2k.many.frag # found chain 1e19A in training set T0547 430 :LAIQDEVQE 1e19A 177 :ETIKKLVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=45808 # 1u2cA.430.215 read from T0547.t2k.many.frag # found chain 1u2cA in template set T0547 430 :LAIQDEVQE 1u2cA 273 :RGVETPARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45809 # 1flmA.430.51 read from T0547.t2k.many.frag # found chain 1flmA in training set T0547 430 :LAIQDEVQE 1flmA 52 :HKTEANVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=45810 # 1wiwA.430.227 read from T0547.t2k.many.frag # found chain 1wiwA in template set T0547 430 :LAIQDEVQE 1wiwA 228 :ALAKEILES Number of specific fragments extracted= 1 number of extra gaps= 0 total=45811 # 1rh6A.430.18 read from T0547.t2k.many.frag # found chain 1rh6A in training set T0547 430 :LAIQDEVQE 1rh6A 19 :ETVRRWVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45812 # 1su8A.430.589 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)E438 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)S599 T0547 430 :LAIQDEVQ 1su8A 590 :LPVTQILT Number of specific fragments extracted= 1 number of extra gaps= 1 total=45813 1e42A expands to /projects/compbio/data/pdb/1e42.pdb.gz 1e42A:# 1e42A.430.182 read from T0547.t2k.many.frag # adding 1e42A to template set # found chain 1e42A in template set T0547 430 :LAIQDEVQE 1e42A 862 :DTVSSKLQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45814 # 1cv8.430.90 read from T0547.t2k.many.frag # found chain 1cv8 in training set T0547 430 :LAIQDEVQE 1cv8 91 :NEVDNLTKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=45815 # 1x3mA.430.292 read from T0547.t2k.many.frag # found chain 1x3mA in template set T0547 430 :LAIQDEVQE 1x3mA 280 :RVLEKAWHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45816 # 1xe7A.430.27 read from T0547.t2k.many.frag # found chain 1xe7A in training set T0547 430 :LAIQDEVQE 1xe7A 28 :SSLQQLIND Number of specific fragments extracted= 1 number of extra gaps= 0 total=45817 # 2bduA.431.266 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 431 :AIQDEVQER 2bduA 267 :ELLEKYMDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45818 # 1aol.431.164 read from T0547.t2k.many.frag # found chain 1aol in template set Warning: unaligning (T0547)R439 (1aol)N181 because L (left) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 1aol 173 :QAVQVCKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=45819 # 1jhjA.431.10 read from T0547.t2k.many.frag # found chain 1jhjA in training set Warning: unaligning (T0547)R439 (1jhjA)G20 because L (left) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 1jhjA 12 :DPKQLERT Number of specific fragments extracted= 1 number of extra gaps= 1 total=45820 # 1qqfA.431.241 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 431 :AIQDEVQER 1qqfA 1251 :PVVRWLNDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45821 # 1e42A.431.183 read from T0547.t2k.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)R439 (1e42A)N871 because G (3-10) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 1e42A 863 :TVSSKLQN Number of specific fragments extracted= 1 number of extra gaps= 1 total=45822 # 1gtkA.431.153 read from T0547.t2k.many.frag # found chain 1gtkA in training set T0547 431 :AIQDEVQER 1gtkA 154 :TRLSKLDNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=45823 # 2fnuA.431.299 read from T0547.t2k.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)R439 (2fnuA)R308 because G (3-10) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 2fnuA 300 :LILESLHK Number of specific fragments extracted= 1 number of extra gaps= 1 total=45824 # 1wraA.431.263 read from T0547.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0547)R439 (1wraA)R298 because G (3-10) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 1wraA 290 :EYVNWLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=45825 # 1e19A.431.177 read from T0547.t2k.many.frag # found chain 1e19A in training set T0547 431 :AIQDEVQER 1e19A 178 :TIKKLVERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=45826 # 1twfB.431.552 read from T0547.t2k.many.frag # found chain 1twfB in template set T0547 431 :AIQDEVQER 1twfB 553 :PIITFLSEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=45827 # 1nnfA.431.176 read from T0547.t2k.many.frag # found chain 1nnfA in training set T0547 431 :AIQDEVQER 1nnfA 177 :VALQAVENG Number of specific fragments extracted= 1 number of extra gaps= 0 total=45828 # 1oi0A.431.81 read from T0547.t2k.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)R439 (1oi0A)F90 because Y (epsilon') conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 1oi0A 82 :EDLSLFTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=45829 # 2axoA.431.223 read from T0547.t2k.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)R439 (2axoA)G232 because Y (epsilon') conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 2axoA 224 :SVVAKVKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=45830 # 1rh6A.431.19 read from T0547.t2k.many.frag # found chain 1rh6A in training set Warning: unaligning (T0547)R439 (1rh6A)S28 because L (left) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 1rh6A 20 :TVRRWVRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=45831 # 1flmA.431.52 read from T0547.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0547)R439 (1flmA)D61 because D (zeta) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 1flmA 53 :KTEANVAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=45832 # 2acaA.431.94 read from T0547.t2k.many.frag # found chain 2acaA in template set T0547 431 :AIQDEVQER 2acaA 95 :SAQSMLENM Number of specific fragments extracted= 1 number of extra gaps= 0 total=45833 # 1oruA.431.151 read from T0547.t2k.many.frag # found chain 1oruA in training set Warning: unaligning (T0547)E438 (1oruA)G156 because T (delta_L) conformation "forbidden" or filtered. T0547 431 :AIQDEVQ 1oruA 149 :AFVRHAL T0547 439 :R 1oruA 157 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=45835 # 1yb3A.431.131 read from T0547.t2k.many.frag # found chain 1yb3A in training set T0547 431 :AIQDEVQER 1yb3A 124 :EVWDRIVNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45836 # 1r2mA.431.37 read from T0547.t2k.many.frag # found chain 1r2mA in template set T0547 431 :AIQDEVQER 1r2mA 38 :IFQAHCASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=45837 # 1guxB.431.87 read from T0547.t2k.many.frag # found chain 1guxB in template set T0547 431 :AIQDEVQER 1guxB 723 :IIVTAYKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45838 # 1srqA.431.208 read from T0547.t2k.many.frag # found chain 1srqA in template set T0547 431 :AIQDEVQER 1srqA 283 :QRKRHIGND Number of specific fragments extracted= 1 number of extra gaps= 0 total=45839 2esnA expands to /projects/compbio/data/pdb/2esn.pdb.gz 2esnA:Skipped atom 983, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 985, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 987, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 989, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 991, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 993, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 995, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 997, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 999, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 1001, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 1003, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 1251, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 1253, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 1255, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 1257, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 1259, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 1261, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 1263, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 1265, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 1267, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 1269, because occupancy 0.500 <= existing 0.500 in 2esnA Skipped atom 1271, because occupancy 0.500 <= existing 0.500 in 2esnA # 2esnA.431.237 read from T0547.t2k.many.frag # adding 2esnA to template set # found chain 2esnA in template set Warning: unaligning (T0547)R439 (2esnA)T244 because Y (epsilon') conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 2esnA 236 :AALFLAGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=45840 # 2d1eA.431.131 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 431 :AIQDEVQER 2d1eA 132 :AYQKSLAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45841 # 1gudA.431.230 read from T0547.t2k.many.frag # found chain 1gudA in training set Warning: unaligning (T0547)R439 (1gudA)G239 because T (delta_L) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 1gudA 231 :EARKMVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=45842 2blkA expands to /projects/compbio/data/pdb/2blk.pdb.gz 2blkA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2blkA.431.99 read from T0547.t2k.many.frag # adding 2blkA to template set # found chain 2blkA in template set Warning: unaligning (T0547)R439 (2blkA)G108 because T (delta_L) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 2blkA 100 :EIKDMYRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=45843 # 1x3mA.431.293 read from T0547.t2k.many.frag # found chain 1x3mA in template set T0547 431 :AIQDEVQER 1x3mA 281 :VLEKAWHEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=45844 # 1u7lA.431.244 read from T0547.t2k.many.frag # found chain 1u7lA in training set T0547 431 :AIQDEVQER 1u7lA 245 :EFTTAAREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=45845 # 1cv8.431.91 read from T0547.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)R439 (1cv8)N100 because L (left) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 1cv8 92 :EVDNLTKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=45846 # 1s3rA.431.321 read from T0547.t2k.many.frag # found chain 1s3rA in template set T0547 431 :AIQDEVQER 1s3rA 319 :AAIDAVVKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=45847 # 1tif.431.32 read from T0547.t2k.many.frag # found chain 1tif in training set Warning: unaligning (T0547)R439 (1tif)R41 because G (3-10) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 1tif 33 :EALEIAAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=45848 # 2bduA.432.267 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)I432 (2bduA)L268 because G (3-10) conformation "forbidden" or filtered. T0547 433 :QDEVQERY 2bduA 269 :LEKYMDSY Number of specific fragments extracted= 1 number of extra gaps= 1 total=45849 # 1aol.432.165 read from T0547.t2k.many.frag # found chain 1aol in template set Warning: unaligning (T0547)R439 (1aol)N181 because L (left) conformation "forbidden" or filtered. T0547 432 :IQDEVQE 1aol 174 :AVQVCKD T0547 440 :Y 1aol 182 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=45851 # 1gtkA.432.154 read from T0547.t2k.many.frag # found chain 1gtkA in training set T0547 432 :IQDEVQERY 1gtkA 155 :RLSKLDNGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45852 # 1jhjA.432.11 read from T0547.t2k.many.frag # found chain 1jhjA in training set Warning: unaligning (T0547)R439 (1jhjA)G20 because L (left) conformation "forbidden" or filtered. T0547 432 :IQDEVQE 1jhjA 13 :PKQLERT T0547 440 :Y 1jhjA 21 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=45854 # 1e42A.432.184 read from T0547.t2k.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)Y440 (1e42A)N872 because L (left) conformation "forbidden" or filtered. T0547 432 :IQDEVQER 1e42A 864 :VSSKLQNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=45855 # 2axoA.432.224 read from T0547.t2k.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)R439 (2axoA)G232 because Y (epsilon') conformation "forbidden" or filtered. T0547 432 :IQDEVQE 2axoA 225 :VVAKVKK T0547 440 :Y 2axoA 233 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=45857 # 1e19A.432.178 read from T0547.t2k.many.frag # found chain 1e19A in training set T0547 432 :IQDEVQERY 1e19A 179 :IKKLVERGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=45858 # 1gudA.432.231 read from T0547.t2k.many.frag # found chain 1gudA in training set Warning: unaligning (T0547)R439 (1gudA)G239 because T (delta_L) conformation "forbidden" or filtered. T0547 432 :IQDEVQE 1gudA 232 :ARKMVEA T0547 440 :Y 1gudA 240 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=45860 # 2esnA.432.238 read from T0547.t2k.many.frag # found chain 2esnA in template set Warning: unaligning (T0547)R439 (2esnA)T244 because Y (epsilon') conformation "forbidden" or filtered. T0547 432 :IQDEVQE 2esnA 237 :ALFLAGS T0547 440 :Y 2esnA 245 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=45862 # 1nnfA.432.177 read from T0547.t2k.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)R439 (1nnfA)G185 because T (delta_L) conformation "forbidden" or filtered. T0547 432 :IQDEVQE 1nnfA 178 :ALQAVEN T0547 440 :Y 1nnfA 186 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=45864 # 1oi0A.432.82 read from T0547.t2k.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)R439 (1oi0A)F90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y440 (1oi0A)G91 because S (epsilon) conformation "forbidden" or filtered. T0547 432 :IQDEVQE 1oi0A 83 :DLSLFTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=45865 # 1flmA.432.53 read from T0547.t2k.many.frag # found chain 1flmA in training set T0547 432 :IQDEVQERY 1flmA 54 :TEANVARDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45866 # 1srqA.432.209 read from T0547.t2k.many.frag # found chain 1srqA in template set T0547 432 :IQDEVQERY 1srqA 284 :RKRHIGNDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=45867 # 1wraA.432.264 read from T0547.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0547)R439 (1wraA)R298 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y440 (1wraA)G299 because T (delta_L) conformation "forbidden" or filtered. T0547 432 :IQDEVQE 1wraA 291 :YVNWLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=45868 # 1rh6A.432.20 read from T0547.t2k.many.frag # found chain 1rh6A in training set Warning: unaligning (T0547)R439 (1rh6A)S28 because L (left) conformation "forbidden" or filtered. T0547 432 :IQDEVQE 1rh6A 21 :VRRWVRE T0547 440 :Y 1rh6A 29 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=45870 # 1twfB.432.553 read from T0547.t2k.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)Y440 (1twfB)G562 because T (delta_L) conformation "forbidden" or filtered. T0547 432 :IQDEVQER 1twfB 554 :IITFLSEW Number of specific fragments extracted= 1 number of extra gaps= 1 total=45871 # 2blkA.432.100 read from T0547.t2k.many.frag # found chain 2blkA in template set T0547 432 :IQDEVQERY 2blkA 101 :IKDMYRQGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=45872 # 2nacA.432.292 read from T0547.t2k.many.frag # found chain 2nacA in template set T0547 432 :IQDEVQERY 2nacA 293 :VARALESGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=45873 # 1m4jA.432.15 read from T0547.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)R439 (1m4jA)G23 because T (delta_L) conformation "forbidden" or filtered. T0547 432 :IQDEVQE 1m4jA 16 :IFARARN T0547 440 :Y 1m4jA 24 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=45875 # 1qqfA.432.242 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 432 :IQDEVQERY 1qqfA 1252 :VVRWLNDER Number of specific fragments extracted= 1 number of extra gaps= 0 total=45876 # 1jqnA.432.737 read from T0547.t2k.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)R439 (1jqnA)G745 because L (left) conformation "forbidden" or filtered. T0547 432 :IQDEVQE 1jqnA 738 :LQKVVED T0547 440 :Y 1jqnA 746 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=45878 2a8kA expands to /projects/compbio/data/pdb/2a8k.pdb.gz 2a8kA:# 2a8kA.432.31 read from T0547.t2k.many.frag # adding 2a8kA to template set # found chain 2a8kA in template set T0547 432 :IQDEVQERY 2a8kA 32 :IKNTVSNGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45879 # 1cv8.432.92 read from T0547.t2k.many.frag # found chain 1cv8 in training set T0547 432 :IQDEVQERY 1cv8 93 :VDNLTKNNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=45880 1wycA expands to /projects/compbio/data/pdb/1wyc.pdb.gz 1wycA:# 1wycA.432.72 read from T0547.t2k.many.frag # adding 1wycA to template set # found chain 1wycA in template set T0547 432 :IQDEVQERY 1wycA 73 :LEQRLEQTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=45881 # 1tif.432.33 read from T0547.t2k.many.frag # found chain 1tif in training set Warning: unaligning (T0547)Y440 (1tif)N42 because L (left) conformation "forbidden" or filtered. T0547 432 :IQDEVQER 1tif 34 :ALEIAARR Number of specific fragments extracted= 1 number of extra gaps= 1 total=45882 # 2dpmA.432.245 read from T0547.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)V436 (2dpmA)Y250 because G (3-10) conformation "forbidden" or filtered. T0547 432 :IQDE 2dpmA 246 :VEEL T0547 437 :QERY 2dpmA 251 :KDFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=45884 # 1szwA.432.265 read from T0547.t2k.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)R439 (1szwA)K251 because L (left) conformation "forbidden" or filtered. T0547 432 :IQDEVQE 1szwA 244 :LQRRVND T0547 440 :Y 1szwA 252 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=45886 # 2fnuA.432.300 read from T0547.t2k.many.frag # found chain 2fnuA in training set T0547 432 :IQDEVQERY 2fnuA 301 :ILESLHKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=45887 # 2ew0A.432.134 read from T0547.t2k.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)R439 (2ew0A)G142 because L (left) conformation "forbidden" or filtered. T0547 432 :IQDEVQE 2ew0A 135 :LEDEIAR T0547 440 :Y 2ew0A 143 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=45889 # 2acaA.432.95 read from T0547.t2k.many.frag # found chain 2acaA in template set Warning: unaligning (T0547)Y440 (2acaA)G104 because T (delta_L) conformation "forbidden" or filtered. T0547 432 :IQDEVQER 2acaA 96 :AQSMLENM Number of specific fragments extracted= 1 number of extra gaps= 1 total=45890 # 1gtkA.433.155 read from T0547.t2k.many.frag # found chain 1gtkA in training set T0547 433 :QDEVQERYL 1gtkA 156 :LSKLDNGEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=45891 # 2bduA.433.268 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 433 :QDEVQERYL 2bduA 269 :LEKYMDSYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=45892 # 1e42A.433.185 read from T0547.t2k.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)Y440 (1e42A)N872 because L (left) conformation "forbidden" or filtered. T0547 433 :QDEVQER 1e42A 865 :SSKLQNN T0547 441 :L 1e42A 873 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=45894 # 1aol.433.166 read from T0547.t2k.many.frag # found chain 1aol in template set Warning: unaligning (T0547)R439 (1aol)N181 because L (left) conformation "forbidden" or filtered. T0547 433 :QDEVQE 1aol 175 :VQVCKD T0547 440 :YL 1aol 182 :KW Number of specific fragments extracted= 2 number of extra gaps= 1 total=45896 # 1gudA.433.232 read from T0547.t2k.many.frag # found chain 1gudA in training set T0547 433 :QDEVQERYL 1gudA 233 :RKMVEAGQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=45897 # 2a8kA.433.32 read from T0547.t2k.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)R439 (2a8kA)G39 because S (epsilon) conformation "forbidden" or filtered. T0547 433 :QDEVQE 2a8kA 33 :KNTVSN T0547 440 :YL 2a8kA 40 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=45899 # 1jhjA.433.12 read from T0547.t2k.many.frag # found chain 1jhjA in training set Warning: unaligning (T0547)R439 (1jhjA)G20 because L (left) conformation "forbidden" or filtered. T0547 433 :QDEVQE 1jhjA 14 :KQLERT T0547 440 :YL 1jhjA 21 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=45901 # 1nnfA.433.178 read from T0547.t2k.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)R439 (1nnfA)G185 because T (delta_L) conformation "forbidden" or filtered. T0547 433 :QDEVQE 1nnfA 179 :LQAVEN T0547 440 :YL 1nnfA 186 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=45903 # 1e19A.433.179 read from T0547.t2k.many.frag # found chain 1e19A in training set T0547 433 :QDEVQERYL 1e19A 180 :KKLVERGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=45904 # 1srqA.433.210 read from T0547.t2k.many.frag # found chain 1srqA in template set T0547 433 :QDEVQERYL 1srqA 285 :KRHIGNDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=45905 # 2axoA.433.225 read from T0547.t2k.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)R439 (2axoA)G232 because Y (epsilon') conformation "forbidden" or filtered. T0547 433 :QDEVQE 2axoA 226 :VAKVKK T0547 440 :YL 2axoA 233 :GC Number of specific fragments extracted= 2 number of extra gaps= 1 total=45907 # 1oi0A.433.83 read from T0547.t2k.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)R439 (1oi0A)F90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y440 (1oi0A)G91 because S (epsilon) conformation "forbidden" or filtered. T0547 433 :QDEVQE 1oi0A 84 :LSLFTR T0547 441 :L 1oi0A 92 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=45909 # 1flmA.433.54 read from T0547.t2k.many.frag # found chain 1flmA in training set T0547 433 :QDEVQERYL 1flmA 55 :EANVARDER Number of specific fragments extracted= 1 number of extra gaps= 0 total=45910 # 2blkA.433.101 read from T0547.t2k.many.frag # found chain 2blkA in template set Warning: unaligning (T0547)R439 (2blkA)G108 because T (delta_L) conformation "forbidden" or filtered. T0547 433 :QDEVQE 2blkA 102 :KDMYRQ T0547 440 :YL 2blkA 109 :KI Number of specific fragments extracted= 2 number of extra gaps= 1 total=45912 # 2ew0A.433.135 read from T0547.t2k.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)R439 (2ew0A)G142 because L (left) conformation "forbidden" or filtered. T0547 433 :QDEVQE 2ew0A 136 :EDEIAR T0547 440 :YL 2ew0A 143 :DW Number of specific fragments extracted= 2 number of extra gaps= 1 total=45914 1ng0A expands to /projects/compbio/data/pdb/1ng0.pdb.gz 1ng0A:# 1ng0A.433.144 read from T0547.t2k.many.frag # adding 1ng0A to template set # found chain 1ng0A in template set Warning: unaligning (T0547)L441 (1ng0A)S153 because L (left) conformation "forbidden" or filtered. T0547 433 :QDEVQERY 1ng0A 145 :TRTMASST Number of specific fragments extracted= 1 number of extra gaps= 1 total=45915 # 2nacA.433.293 read from T0547.t2k.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)R439 (2nacA)G300 because T (delta_L) conformation "forbidden" or filtered. T0547 433 :QDEVQE 2nacA 294 :ARALES T0547 440 :YL 2nacA 301 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45917 2acvA expands to /projects/compbio/data/pdb/2acv.pdb.gz 2acvA:# 2acvA.433.342 read from T0547.t2k.many.frag # adding 2acvA to template set # found chain 2acvA in template set T0547 433 :QDEVQERYL 2acvA 343 :VEVLAHKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=45918 # 1rh6A.433.21 read from T0547.t2k.many.frag # found chain 1rh6A in training set Warning: unaligning (T0547)R439 (1rh6A)S28 because L (left) conformation "forbidden" or filtered. T0547 433 :QDEVQE 1rh6A 22 :RRWVRE T0547 440 :YL 1rh6A 29 :RI Number of specific fragments extracted= 2 number of extra gaps= 1 total=45920 1jtgB expands to /projects/compbio/data/pdb/1jtg.pdb.gz 1jtgB:# 1jtgB.433.100 read from T0547.t2k.many.frag # adding 1jtgB to template set # found chain 1jtgB in template set Warning: unaligning (T0547)Q437 (1jtgB)G105 because S (epsilon) conformation "forbidden" or filtered. T0547 433 :QDEV 1jtgB 101 :LATV T0547 438 :ERYL 1jtgB 106 :QGSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=45922 # 2esnA.433.239 read from T0547.t2k.many.frag # found chain 2esnA in template set Warning: unaligning (T0547)R439 (2esnA)T244 because Y (epsilon') conformation "forbidden" or filtered. T0547 433 :QDEVQE 2esnA 238 :LFLAGS T0547 440 :YL 2esnA 245 :DF Number of specific fragments extracted= 2 number of extra gaps= 1 total=45924 1wk2A expands to /projects/compbio/data/pdb/1wk2.pdb.gz 1wk2A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wk2A.433.14 read from T0547.t2k.many.frag # adding 1wk2A to template set # found chain 1wk2A in template set Warning: unaligning (T0547)R439 (1wk2A)G21 because T (delta_L) conformation "forbidden" or filtered. T0547 433 :QDEVQE 1wk2A 15 :ASLIVD T0547 440 :YL 1wk2A 22 :RK Number of specific fragments extracted= 2 number of extra gaps= 1 total=45926 # 1jx6A.433.272 read from T0547.t2k.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)R439 (1jx6A)G302 because T (delta_L) conformation "forbidden" or filtered. T0547 433 :QDEVQE 1jx6A 296 :LDAIQK T0547 440 :YL 1jx6A 303 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45928 # 1kq1A.433.12 read from T0547.t2k.many.frag # found chain 1kq1A in training set T0547 433 :QDEVQERYL 1kq1A 13 :ENFKANQTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45929 # 2furA.433.69 read from T0547.t2k.many.frag # found chain 2furA in training set Warning: unaligning (T0547)R439 (2furA)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 433 :QDEVQE 2furA 69 :YGILKT T0547 440 :YL 2furA 76 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45931 # 1m4jA.433.16 read from T0547.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)R439 (1m4jA)G23 because T (delta_L) conformation "forbidden" or filtered. T0547 433 :QDEVQE 1m4jA 17 :FARARN T0547 440 :YL 1m4jA 24 :KY Number of specific fragments extracted= 2 number of extra gaps= 1 total=45933 # 2bmaA.433.352 read from T0547.t2k.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)Y440 (2bmaA)G338 because T (delta_L) conformation "forbidden" or filtered. T0547 433 :QDEVQER 2bmaA 331 :AKLLQKN T0547 441 :L 2bmaA 339 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=45935 # 1wycA.433.73 read from T0547.t2k.many.frag # found chain 1wycA in template set Warning: unaligning (T0547)Y440 (1wycA)Y81 because L (left) conformation "forbidden" or filtered. T0547 433 :QDEVQER 1wycA 74 :EQRLEQT T0547 441 :L 1wycA 82 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=45937 # 1oruA.433.153 read from T0547.t2k.many.frag # found chain 1oruA in training set Warning: unaligning (T0547)Y440 (1oruA)R158 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L441 (1oruA)G159 because S (epsilon) conformation "forbidden" or filtered. T0547 433 :QDEVQER 1oruA 151 :VRHALGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=45938 1gesA expands to /projects/compbio/data/pdb/1ges.pdb.gz 1gesA:Skipped atom 2956, because occupancy 0.500 <= existing 0.500 in 1gesA # 1gesA.433.359 read from T0547.t2k.many.frag # adding 1gesA to template set # found chain 1gesA in template set Warning: unaligning (T0547)Q437 (1gesA)G364 because S (epsilon) conformation "forbidden" or filtered. T0547 433 :QDEV 1gesA 360 :REQY T0547 438 :ERYL 1gesA 365 :DDQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=45940 # 1gtkA.434.156 read from T0547.t2k.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)R439 (1gtkA)G162 because T (delta_L) conformation "forbidden" or filtered. T0547 434 :DEVQE 1gtkA 157 :SKLDN T0547 440 :YLV 1gtkA 163 :EYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=45942 # 2bduA.434.269 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 434 :DEVQERYLV 2bduA 270 :EKYMDSYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=45943 # 2a8kA.434.33 read from T0547.t2k.many.frag # found chain 2a8kA in template set T0547 434 :DEVQERYLV 2a8kA 34 :NTVSNGATG Number of specific fragments extracted= 1 number of extra gaps= 0 total=45944 # 1ng0A.434.145 read from T0547.t2k.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)R439 (1ng0A)S151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L441 (1ng0A)S153 because L (left) conformation "forbidden" or filtered. T0547 434 :DEVQE 1ng0A 146 :RTMAS T0547 440 :Y 1ng0A 152 :T T0547 442 :V 1ng0A 154 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=45947 # 1e42A.434.186 read from T0547.t2k.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)Y440 (1e42A)N872 because L (left) conformation "forbidden" or filtered. T0547 434 :DEVQER 1e42A 866 :SKLQNN T0547 441 :LV 1e42A 873 :VY Number of specific fragments extracted= 2 number of extra gaps= 1 total=45949 # 1aol.434.167 read from T0547.t2k.many.frag # found chain 1aol in template set Warning: unaligning (T0547)R439 (1aol)N181 because L (left) conformation "forbidden" or filtered. T0547 434 :DEVQE 1aol 176 :QVCKD T0547 440 :YLV 1aol 182 :KWC Number of specific fragments extracted= 2 number of extra gaps= 1 total=45951 # 1jhjA.434.13 read from T0547.t2k.many.frag # found chain 1jhjA in training set Warning: unaligning (T0547)R439 (1jhjA)G20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y440 (1jhjA)T21 because G (3-10) conformation "forbidden" or filtered. T0547 434 :DEVQE 1jhjA 15 :QLERT T0547 441 :LV 1jhjA 22 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=45953 # 2acvA.434.343 read from T0547.t2k.many.frag # found chain 2acvA in template set T0547 434 :DEVQERYLV 2acvA 344 :EVLAHKAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=45954 # 1gudA.434.233 read from T0547.t2k.many.frag # found chain 1gudA in training set T0547 434 :DEVQERYLV 1gudA 234 :KMVEAGQMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=45955 # 2ew0A.434.136 read from T0547.t2k.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)R439 (2ew0A)G142 because L (left) conformation "forbidden" or filtered. T0547 434 :DEVQE 2ew0A 137 :DEIAR T0547 440 :YLV 2ew0A 143 :DWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=45957 # 1flmA.434.55 read from T0547.t2k.many.frag # found chain 1flmA in training set T0547 434 :DEVQERYLV 1flmA 56 :ANVARDERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=45958 # 2axoA.434.226 read from T0547.t2k.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)L441 (2axoA)C234 because Y (epsilon') conformation "forbidden" or filtered. T0547 434 :DEVQERY 2axoA 227 :AKVKKGG T0547 442 :V 2axoA 235 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=45960 # 2asbA.434.93 read from T0547.t2k.many.frag # found chain 2asbA in training set T0547 434 :DEVQERYLV 2asbA 198 :PEIADGSVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=45961 # 1nnfA.434.179 read from T0547.t2k.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)R439 (1nnfA)G185 because T (delta_L) conformation "forbidden" or filtered. T0547 434 :DEVQE 1nnfA 180 :QAVEN T0547 440 :YLV 1nnfA 186 :EVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=45963 # 2nacA.434.294 read from T0547.t2k.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)R439 (2nacA)G300 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)V442 (2nacA)A303 because G (3-10) conformation "forbidden" or filtered. T0547 434 :DEVQE 2nacA 295 :RALES T0547 440 :YL 2nacA 301 :RL Number of specific fragments extracted= 2 number of extra gaps= 2 total=45965 # 1m4jA.434.17 read from T0547.t2k.many.frag # found chain 1m4jA in training set T0547 434 :DEVQERYLV 1m4jA 18 :ARARNGKYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=45966 # 1e19A.434.180 read from T0547.t2k.many.frag # found chain 1e19A in training set T0547 434 :DEVQERYLV 1e19A 181 :KLVERGVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=45967 # 2furA.434.70 read from T0547.t2k.many.frag # found chain 2furA in training set Warning: unaligning (T0547)R439 (2furA)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 434 :DEVQE 2furA 70 :GILKT T0547 440 :YLV 2furA 76 :QLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=45969 # 1kq1A.434.13 read from T0547.t2k.many.frag # found chain 1kq1A in training set T0547 434 :DEVQERYLV 1kq1A 14 :NFKANQTEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=45970 1s4nA expands to /projects/compbio/data/pdb/1s4n.pdb.gz 1s4nA:# 1s4nA.434.168 read from T0547.t2k.many.frag # adding 1s4nA to template set # found chain 1s4nA in template set T0547 434 :DEVQERYLV 1s4nA 263 :WMQENEKVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=45971 # 2blkA.434.102 read from T0547.t2k.many.frag # found chain 2blkA in template set T0547 434 :DEVQERYLV 2blkA 103 :DMYRQGKIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=45972 # 1oi0A.434.84 read from T0547.t2k.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)R439 (1oi0A)F90 because Y (epsilon') conformation "forbidden" or filtered. T0547 434 :DEVQE 1oi0A 85 :SLFTR T0547 440 :YLV 1oi0A 91 :GKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=45974 # 1wk2A.434.15 read from T0547.t2k.many.frag # found chain 1wk2A in template set Warning: unaligning (T0547)R439 (1wk2A)G21 because T (delta_L) conformation "forbidden" or filtered. T0547 434 :DEVQE 1wk2A 16 :SLIVD T0547 440 :YLV 1wk2A 22 :RKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=45976 # 1jtgB.434.101 read from T0547.t2k.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)Y440 (1jtgB)S108 because G (3-10) conformation "forbidden" or filtered. T0547 434 :DEVQER 1jtgB 102 :ATVGQG T0547 441 :LV 1jtgB 109 :CT Number of specific fragments extracted= 2 number of extra gaps= 1 total=45978 # 1srqA.434.211 read from T0547.t2k.many.frag # found chain 1srqA in template set T0547 434 :DEVQERYLV 1srqA 286 :RHIGNDIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=45979 # 1wycA.434.74 read from T0547.t2k.many.frag # found chain 1wycA in template set Warning: unaligning (T0547)Y440 (1wycA)Y81 because L (left) conformation "forbidden" or filtered. T0547 434 :DEVQER 1wycA 75 :QRLEQT T0547 441 :LV 1wycA 82 :TD Number of specific fragments extracted= 2 number of extra gaps= 1 total=45981 # 2bmaA.434.353 read from T0547.t2k.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)R439 (2bmaA)N337 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y440 (2bmaA)G338 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)V442 (2bmaA)I340 because G (3-10) conformation "forbidden" or filtered. T0547 434 :DEVQE 2bmaA 332 :KLLQK T0547 441 :L 2bmaA 339 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=45983 # 1tif.434.35 read from T0547.t2k.many.frag # found chain 1tif in training set Warning: unaligning (T0547)Y440 (1tif)N42 because L (left) conformation "forbidden" or filtered. T0547 434 :DEVQER 1tif 36 :EIAARR T0547 441 :LV 1tif 43 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=45985 # 1rh6A.434.22 read from T0547.t2k.many.frag # found chain 1rh6A in training set T0547 434 :DEVQERYLV 1rh6A 23 :RWVRESRIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=45986 # 1gesA.434.360 read from T0547.t2k.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)Y440 (1gesA)Q367 because G (3-10) conformation "forbidden" or filtered. T0547 434 :DEVQER 1gesA 361 :EQYGDD T0547 441 :LV 1gesA 368 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=45988 # 2bduA.435.270 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 435 :EVQERYLVN 2bduA 271 :KYMDSYDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=45989 # 1gtkA.435.157 read from T0547.t2k.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)R439 (1gtkA)G162 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1gtkA)A166 because Y (epsilon') conformation "forbidden" or filtered. T0547 435 :EVQE 1gtkA 158 :KLDN T0547 440 :YLV 1gtkA 163 :EYD Number of specific fragments extracted= 2 number of extra gaps= 2 total=45991 # 1ng0A.435.146 read from T0547.t2k.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)N443 (1ng0A)T155 because Y (epsilon') conformation "forbidden" or filtered. T0547 435 :EVQERYLV 1ng0A 147 :TMASSTSF Number of specific fragments extracted= 1 number of extra gaps= 1 total=45992 # 2acvA.435.344 read from T0547.t2k.many.frag # found chain 2acvA in template set Warning: unaligning (T0547)N443 (2acvA)G353 because Y (epsilon') conformation "forbidden" or filtered. T0547 435 :EVQERYLV 2acvA 345 :VLAHKAIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=45993 # 2a8kA.435.34 read from T0547.t2k.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)R439 (2a8kA)G39 because S (epsilon) conformation "forbidden" or filtered. T0547 435 :EVQE 2a8kA 35 :TVSN T0547 440 :YLVN 2a8kA 40 :ATGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=45995 # 1e42A.435.187 read from T0547.t2k.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)N443 (1e42A)T875 because P (beta_P) conformation "forbidden" or filtered. T0547 435 :EVQERYLV 1e42A 867 :KLQNNNVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=45996 1pgl2 expands to /projects/compbio/data/pdb/1pgl.pdb.gz 1pgl2:# 1pgl2.435.140 read from T0547.t2k.many.frag # adding 1pgl2 to template set # found chain 1pgl2 in template set T0547 435 :EVQERYLVN 1pgl2 141 :LKRTGFHCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=45997 # 1s4nA.435.169 read from T0547.t2k.many.frag # found chain 1s4nA in template set Warning: unaligning (T0547)R439 (1s4nA)E268 because L (left) conformation "forbidden" or filtered. T0547 435 :EVQE 1s4nA 264 :MQEN T0547 440 :YLVN 1s4nA 269 :KVYG Number of specific fragments extracted= 2 number of extra gaps= 1 total=45999 # 2asbA.435.94 read from T0547.t2k.many.frag # found chain 2asbA in training set Warning: unaligning (T0547)R439 (2asbA)G203 because T (delta_L) conformation "forbidden" or filtered. T0547 435 :EVQE 2asbA 199 :EIAD T0547 440 :YLVN 2asbA 204 :SVEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=46001 # 2nacA.435.295 read from T0547.t2k.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)N443 (2nacA)G304 because Y (epsilon') conformation "forbidden" or filtered. T0547 435 :EVQERYLV 2nacA 296 :ALESGRLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=46002 # 1uv4A.435.189 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)E438 (1uv4A)N193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1uv4A)G194 because T (delta_L) conformation "forbidden" or filtered. T0547 435 :EVQ 1uv4A 190 :TYQ T0547 440 :YLVN 1uv4A 195 :YYYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=46004 # 1jhjA.435.14 read from T0547.t2k.many.frag # found chain 1jhjA in training set Warning: unaligning (T0547)R439 (1jhjA)G20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1jhjA)E24 because P (beta_P) conformation "forbidden" or filtered. T0547 435 :EVQE 1jhjA 16 :LERT T0547 440 :YLV 1jhjA 21 :TVR Number of specific fragments extracted= 2 number of extra gaps= 2 total=46006 # 1aol.435.168 read from T0547.t2k.many.frag # found chain 1aol in template set Warning: unaligning (T0547)R439 (1aol)N181 because L (left) conformation "forbidden" or filtered. T0547 435 :EVQE 1aol 177 :VCKD T0547 440 :YLVN 1aol 182 :KWCN Number of specific fragments extracted= 2 number of extra gaps= 1 total=46008 # 1srqA.435.212 read from T0547.t2k.many.frag # found chain 1srqA in template set Warning: unaligning (T0547)R439 (1srqA)D291 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1srqA)V295 because P (beta_P) conformation "forbidden" or filtered. T0547 435 :EVQE 1srqA 287 :HIGN T0547 440 :YLV 1srqA 292 :IVA Number of specific fragments extracted= 2 number of extra gaps= 2 total=46010 2bukA expands to /projects/compbio/data/pdb/2buk.pdb.gz 2bukA:# 2bukA.435.119 read from T0547.t2k.many.frag # adding 2bukA to template set # found chain 2bukA in template set T0547 435 :EVQERYLVN 2bukA 119 :TLQQKRFTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=46011 # 1e19A.435.181 read from T0547.t2k.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)R439 (1e19A)G186 because T (delta_L) conformation "forbidden" or filtered. T0547 435 :EVQE 1e19A 182 :LVER T0547 440 :YLVN 1e19A 187 :VIVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=46013 # 2ew0A.435.137 read from T0547.t2k.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)R439 (2ew0A)G142 because L (left) conformation "forbidden" or filtered. T0547 435 :EVQE 2ew0A 138 :EIAR T0547 440 :YLVN 2ew0A 143 :DWLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=46015 # 1jtgB.435.102 read from T0547.t2k.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)V436 (1jtgB)V104 because G (3-10) conformation "forbidden" or filtered. T0547 435 :E 1jtgB 103 :T T0547 437 :QERYLVN 1jtgB 105 :GQGSCTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=46017 # 1wycA.435.75 read from T0547.t2k.many.frag # found chain 1wycA in template set Warning: unaligning (T0547)Y440 (1wycA)Y81 because L (left) conformation "forbidden" or filtered. T0547 435 :EVQER 1wycA 76 :RLEQT T0547 441 :LVN 1wycA 82 :TDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=46019 # 1kq1A.435.14 read from T0547.t2k.many.frag # found chain 1kq1A in training set Warning: unaligning (T0547)R439 (1kq1A)Q19 because L (left) conformation "forbidden" or filtered. T0547 435 :EVQE 1kq1A 15 :FKAN T0547 440 :YLVN 1kq1A 20 :TEVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=46021 # 1m4jA.435.18 read from T0547.t2k.many.frag # found chain 1m4jA in training set T0547 435 :EVQERYLVN 1m4jA 19 :RARNGKYRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46022 # 1gudA.435.234 read from T0547.t2k.many.frag # found chain 1gudA in training set Warning: unaligning (T0547)R439 (1gudA)G239 because T (delta_L) conformation "forbidden" or filtered. T0547 435 :EVQE 1gudA 235 :MVEA T0547 440 :YLVN 1gudA 240 :QMTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=46024 # 2axoA.435.227 read from T0547.t2k.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)R439 (2axoA)G232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L441 (2axoA)C234 because Y (epsilon') conformation "forbidden" or filtered. T0547 435 :EVQE 2axoA 228 :KVKK T0547 440 :Y 2axoA 233 :G T0547 442 :VN 2axoA 235 :AV Number of specific fragments extracted= 3 number of extra gaps= 2 total=46027 # 2bmaA.435.354 read from T0547.t2k.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)Y440 (2bmaA)G338 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)V442 (2bmaA)I340 because G (3-10) conformation "forbidden" or filtered. T0547 435 :EVQER 2bmaA 333 :LLQKN T0547 441 :L 2bmaA 339 :C T0547 443 :N 2bmaA 341 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=46030 # 1nnfA.435.180 read from T0547.t2k.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)R439 (1nnfA)G185 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1nnfA)A189 because Y (epsilon') conformation "forbidden" or filtered. T0547 435 :EVQE 1nnfA 181 :AVEN T0547 440 :YLV 1nnfA 186 :EVP Number of specific fragments extracted= 2 number of extra gaps= 2 total=46032 1y08A expands to /projects/compbio/data/pdb/1y08.pdb.gz 1y08A:# 1y08A.435.225 read from T0547.t2k.many.frag # adding 1y08A to template set # found chain 1y08A in template set Warning: unaligning (T0547)N443 (1y08A)G250 because E (beta_S) conformation "forbidden" or filtered. T0547 435 :EVQERYLV 1y08A 242 :ELTEGKAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=46033 # 1gesA.435.361 read from T0547.t2k.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)Q437 (1gesA)G364 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1gesA)V370 because E (beta_S) conformation "forbidden" or filtered. T0547 435 :EV 1gesA 362 :QY T0547 438 :ERYLV 1gesA 365 :DDQVK Number of specific fragments extracted= 2 number of extra gaps= 2 total=46035 # 2furA.435.71 read from T0547.t2k.many.frag # found chain 2furA in training set T0547 435 :EVQERYLVN 2furA 71 :ILKTGQLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46036 # 1wtjA.435.135 read from T0547.t2k.many.frag # found chain 1wtjA in training set Warning: unaligning (T0547)Y440 (1wtjA)G141 because T (delta_L) conformation "forbidden" or filtered. T0547 435 :EVQER 1wtjA 136 :PFAEQ T0547 441 :LVN 1wtjA 142 :LVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=46038 # 1knwA.435.395 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E438 (1knwA)N399 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1knwA)G400 because T (delta_L) conformation "forbidden" or filtered. T0547 435 :EVQ 1knwA 396 :LFD T0547 440 :YLVN 1knwA 401 :QARL Number of specific fragments extracted= 2 number of extra gaps= 1 total=46040 # 2bduA.436.271 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 436 :VQERYLVNF 2bduA 272 :YMDSYDIVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46041 # 1uv4A.436.190 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)Q437 (1uv4A)Q192 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1uv4A)G194 because T (delta_L) conformation "forbidden" or filtered. T0547 436 :V 1uv4A 191 :Y T0547 438 :E 1uv4A 193 :N T0547 440 :YLVNF 1uv4A 195 :YYYLM Number of specific fragments extracted= 3 number of extra gaps= 2 total=46044 # 1ng0A.436.147 read from T0547.t2k.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)N443 (1ng0A)T155 because Y (epsilon') conformation "forbidden" or filtered. T0547 436 :VQERYLV 1ng0A 148 :MASSTSF T0547 444 :F 1ng0A 156 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=46046 # 1pgl2.436.141 read from T0547.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0547)R439 (1pgl2)G145 because T (delta_L) conformation "forbidden" or filtered. T0547 436 :VQE 1pgl2 142 :KRT T0547 440 :YLVNF 1pgl2 146 :FHCDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=46048 # 1gtkA.436.158 read from T0547.t2k.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)N443 (1gtkA)A166 because Y (epsilon') conformation "forbidden" or filtered. T0547 436 :VQERYLV 1gtkA 159 :LDNGEYD T0547 444 :F 1gtkA 167 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=46050 # 1s4nA.436.170 read from T0547.t2k.many.frag # found chain 1s4nA in template set Warning: unaligning (T0547)R439 (1s4nA)E268 because L (left) conformation "forbidden" or filtered. T0547 436 :VQE 1s4nA 265 :QEN T0547 440 :YLVNF 1s4nA 269 :KVYGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=46052 # 2asbA.436.95 read from T0547.t2k.many.frag # found chain 2asbA in training set Warning: unaligning (T0547)R439 (2asbA)G203 because T (delta_L) conformation "forbidden" or filtered. T0547 436 :VQE 2asbA 200 :IAD T0547 440 :YLVNF 2asbA 204 :SVEIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46054 # 2acvA.436.345 read from T0547.t2k.many.frag # found chain 2acvA in template set Warning: unaligning (T0547)N443 (2acvA)G353 because Y (epsilon') conformation "forbidden" or filtered. T0547 436 :VQERYLV 2acvA 346 :LAHKAIG T0547 444 :F 2acvA 354 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=46056 # 1knwA.436.396 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)R439 (1knwA)G400 because T (delta_L) conformation "forbidden" or filtered. T0547 436 :VQE 1knwA 397 :FDN T0547 440 :YLVNF 1knwA 401 :QARLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=46058 # 2a8kA.436.35 read from T0547.t2k.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)R439 (2a8kA)G39 because S (epsilon) conformation "forbidden" or filtered. T0547 436 :VQE 2a8kA 36 :VSN T0547 440 :YLVNF 2a8kA 40 :ATGTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=46060 # 2nacA.436.296 read from T0547.t2k.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)R439 (2nacA)G300 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (2nacA)G304 because Y (epsilon') conformation "forbidden" or filtered. T0547 436 :VQE 2nacA 297 :LES T0547 440 :YLV 2nacA 301 :RLA T0547 444 :F 2nacA 305 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=46063 # 1e42A.436.188 read from T0547.t2k.many.frag # found chain 1e42A in template set T0547 436 :VQERYLVNF 1e42A 868 :LQNNNVYTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=46064 # 1t3yA.436.50 read from T0547.t2k.many.frag # found chain 1t3yA in training set T0547 436 :VQERYLVNF 1t3yA 52 :CTDDVRLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46065 # 1y08A.436.226 read from T0547.t2k.many.frag # found chain 1y08A in template set T0547 436 :VQERYLVNF 1y08A 243 :LTEGKALGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46066 # 1kq1A.436.15 read from T0547.t2k.many.frag # found chain 1kq1A in training set Warning: unaligning (T0547)R439 (1kq1A)Q19 because L (left) conformation "forbidden" or filtered. T0547 436 :VQE 1kq1A 16 :KAN T0547 440 :YLVNF 1kq1A 20 :TEVTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46068 # 2furA.436.72 read from T0547.t2k.many.frag # found chain 2furA in training set Warning: unaligning (T0547)R439 (2furA)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 436 :VQE 2furA 72 :LKT T0547 440 :YLVNF 2furA 76 :QLIAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=46070 # 1srqA.436.213 read from T0547.t2k.many.frag # found chain 1srqA in template set T0547 436 :VQERYLVNF 1srqA 288 :IGNDIVAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=46071 # 1p30A.436.893 read from T0547.t2k.many.frag # found chain 1p30A in template set Warning: unaligning (T0547)R439 (1p30A)S896 because Y (epsilon') conformation "forbidden" or filtered. T0547 436 :VQE 1p30A 893 :YAN T0547 440 :YLVNF 1p30A 897 :AHALD Number of specific fragments extracted= 2 number of extra gaps= 1 total=46073 # 1wtjA.436.136 read from T0547.t2k.many.frag # found chain 1wtjA in training set Warning: unaligning (T0547)R439 (1wtjA)Q140 because G (3-10) conformation "forbidden" or filtered. T0547 436 :VQE 1wtjA 137 :FAE T0547 440 :YLVNF 1wtjA 141 :GLVAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=46075 1ylnA expands to /projects/compbio/data/pdb/1yln.pdb.gz 1ylnA:Bad short name: S for alphabet: pdb_atoms Bad short name: O1S for alphabet: pdb_atoms Bad short name: O2S for alphabet: pdb_atoms Bad short name: O3S for alphabet: pdb_atoms # 1ylnA.436.84 read from T0547.t2k.many.frag # adding 1ylnA to template set # found chain 1ylnA in template set Warning: unaligning (T0547)Q437 (1ylnA)Q86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (1ylnA)E87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1ylnA)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 436 :V 1ylnA 85 :F T0547 440 :YLVNF 1ylnA 89 :FWMNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=46077 # 1s7iA.436.42 read from T0547.t2k.many.frag # found chain 1s7iA in training set Warning: unaligning (T0547)R439 (1s7iA)G46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)F444 (1s7iA)S51 because Y (epsilon') conformation "forbidden" or filtered. T0547 436 :VQE 1s7iA 43 :GKA T0547 440 :YLVN 1s7iA 47 :HYIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=46079 # 1m4jA.436.19 read from T0547.t2k.many.frag # found chain 1m4jA in training set T0547 436 :VQERYLVNF 1m4jA 20 :ARNGKYRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46080 # 2bukA.436.120 read from T0547.t2k.many.frag # found chain 2bukA in template set Warning: unaligning (T0547)R439 (2bukA)K123 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (2bukA)I127 because P (beta_P) conformation "forbidden" or filtered. T0547 436 :VQE 2bukA 120 :LQQ T0547 440 :YLV 2bukA 124 :RFT T0547 444 :F 2bukA 128 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=46083 # 1oruA.436.156 read from T0547.t2k.many.frag # found chain 1oruA in training set Warning: unaligning (T0547)E438 (1oruA)G156 because T (delta_L) conformation "forbidden" or filtered. T0547 436 :VQ 1oruA 154 :AL T0547 439 :RYLVNF 1oruA 157 :IRGIVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=46085 2bh1A expands to /projects/compbio/data/pdb/2bh1.pdb.gz 2bh1A:# 2bh1A.436.23 read from T0547.t2k.many.frag # adding 2bh1A to template set # found chain 2bh1A in template set Warning: unaligning (T0547)N443 (2bh1A)A31 because Y (epsilon') conformation "forbidden" or filtered. T0547 436 :VQERYLV 2bh1A 24 :AEQQEVI T0547 444 :F 2bh1A 32 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=46087 # 2blkA.436.104 read from T0547.t2k.many.frag # found chain 2blkA in template set Warning: unaligning (T0547)R439 (2blkA)G108 because T (delta_L) conformation "forbidden" or filtered. T0547 436 :VQE 2blkA 105 :YRQ T0547 440 :YLVNF 2blkA 109 :KISFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=46089 # 1jhjA.436.15 read from T0547.t2k.many.frag # found chain 1jhjA in training set Warning: unaligning (T0547)R439 (1jhjA)G20 because L (left) conformation "forbidden" or filtered. T0547 436 :VQE 1jhjA 17 :ERT T0547 440 :YLVNF 1jhjA 21 :TVREI Number of specific fragments extracted= 2 number of extra gaps= 1 total=46091 # 1gesA.436.362 read from T0547.t2k.many.frag # found chain 1gesA in template set T0547 436 :VQERYLVNF 1gesA 363 :YGDDQVKVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46092 # 1aol.436.169 read from T0547.t2k.many.frag # found chain 1aol in template set Warning: unaligning (T0547)R439 (1aol)N181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V442 (1aol)C184 because G (3-10) conformation "forbidden" or filtered. T0547 436 :VQE 1aol 178 :CKD T0547 440 :YL 1aol 182 :KW T0547 443 :NF 1aol 185 :NP Number of specific fragments extracted= 3 number of extra gaps= 2 total=46095 # 2acaA.436.55 read from T0547.t2k.many.frag # found chain 2acaA in template set T0547 436 :VQERYLVNF 2acaA 56 :TQQGKSLVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46096 # 1uv4A.437.191 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)Q437 (1uv4A)Q192 because E (beta_S) conformation "forbidden" or filtered. T0547 438 :ERYLVNFS 1uv4A 193 :NGYYYLMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=46097 # 2bduA.437.272 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 437 :QERYLVNFS 2bduA 273 :MDSYDIVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=46098 # 1knwA.437.397 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E438 (1knwA)N399 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1knwA)G400 because T (delta_L) conformation "forbidden" or filtered. T0547 437 :Q 1knwA 398 :D T0547 440 :YLVNFS 1knwA 401 :QARLIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=46100 # 1ng0A.437.148 read from T0547.t2k.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)L441 (1ng0A)S153 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1ng0A)T155 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1ng0A)S157 because Y (epsilon') conformation "forbidden" or filtered. T0547 437 :QERY 1ng0A 149 :ASST T0547 442 :V 1ng0A 154 :F T0547 444 :F 1ng0A 156 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=46103 # 1pgl2.437.142 read from T0547.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0547)R439 (1pgl2)G145 because T (delta_L) conformation "forbidden" or filtered. T0547 437 :QE 1pgl2 143 :RT T0547 440 :YLVNFS 1pgl2 146 :FHCDII Number of specific fragments extracted= 2 number of extra gaps= 1 total=46105 # 2acvA.437.346 read from T0547.t2k.many.frag # found chain 2acvA in template set Warning: unaligning (T0547)N443 (2acvA)G353 because Y (epsilon') conformation "forbidden" or filtered. T0547 437 :QERYLV 2acvA 347 :AHKAIG T0547 444 :FS 2acvA 354 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46107 # 1gtkA.437.159 read from T0547.t2k.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)N443 (1gtkA)A166 because Y (epsilon') conformation "forbidden" or filtered. T0547 437 :QERYLV 1gtkA 160 :DNGEYD T0547 444 :FS 1gtkA 167 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=46109 # 1lyqA.437.62 read from T0547.t2k.many.frag # found chain 1lyqA in training set Warning: unaligning (T0547)Y440 (1lyqA)K66 because T (delta_L) conformation "forbidden" or filtered. T0547 437 :QER 1lyqA 63 :ADP T0547 441 :LVNFS 1lyqA 67 :SMVII Number of specific fragments extracted= 2 number of extra gaps= 1 total=46111 # 1kzfA.437.78 read from T0547.t2k.many.frag # found chain 1kzfA in training set Warning: unaligning (T0547)N443 (1kzfA)C65 because Y (epsilon') conformation "forbidden" or filtered. T0547 437 :QERYLV 1kzfA 59 :CEGQLV T0547 444 :FS 1kzfA 66 :SV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46113 # 1h2wA.437.241 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)N443 (1h2wA)L248 because E (beta_S) conformation "forbidden" or filtered. T0547 437 :QERYLV 1h2wA 242 :DDGRYV T0547 444 :FS 1h2wA 249 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=46115 # 2bh1A.437.24 read from T0547.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)N443 (2bh1A)A31 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (2bh1A)G33 because Y (epsilon') conformation "forbidden" or filtered. T0547 437 :QERYLV 2bh1A 25 :EQQEVI T0547 444 :F 2bh1A 32 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=46117 # 2a8kA.437.36 read from T0547.t2k.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)R439 (2a8kA)G39 because S (epsilon) conformation "forbidden" or filtered. T0547 437 :QE 2a8kA 37 :SN T0547 440 :YLVNFS 2a8kA 40 :ATGTSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=46119 # 1s7iA.437.43 read from T0547.t2k.many.frag # found chain 1s7iA in training set Warning: unaligning (T0547)N443 (1s7iA)A50 because Y (epsilon') conformation "forbidden" or filtered. T0547 437 :QERYLV 1s7iA 44 :KAGHYI T0547 444 :FS 1s7iA 51 :SH Number of specific fragments extracted= 2 number of extra gaps= 1 total=46121 1stfI expands to /projects/compbio/data/pdb/1stf.pdb.gz 1stfI:# 1stfI.437.59 read from T0547.t2k.many.frag # adding 1stfI to template set # found chain 1stfI in template set Warning: unaligning (T0547)Q437 because of BadResidue code BAD_PEPTIDE at template residue (1stfI)G67 T0547 438 :ERYLVNFS 1stfI 68 :DEDFVHLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=46122 # 1t3yA.437.51 read from T0547.t2k.many.frag # found chain 1t3yA in training set Warning: unaligning (T0547)R439 (1t3yA)D55 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V442 (1t3yA)L58 because Y (epsilon') conformation "forbidden" or filtered. T0547 437 :QE 1t3yA 53 :TD T0547 440 :YL 1t3yA 56 :VR T0547 443 :NFS 1t3yA 59 :FAF Number of specific fragments extracted= 3 number of extra gaps= 2 total=46125 # 2asbA.437.96 read from T0547.t2k.many.frag # found chain 2asbA in training set T0547 437 :QERYLVNFS 2asbA 201 :ADGSVEIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46126 # 1s4nA.437.171 read from T0547.t2k.many.frag # found chain 1s4nA in template set Warning: unaligning (T0547)R439 (1s4nA)E268 because L (left) conformation "forbidden" or filtered. T0547 437 :QE 1s4nA 266 :EN T0547 440 :YLVNFS 1s4nA 269 :KVYGFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=46128 # 1e42A.437.189 read from T0547.t2k.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)Y440 (1e42A)N872 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1e42A)T875 because P (beta_P) conformation "forbidden" or filtered. T0547 437 :QER 1e42A 869 :QNN T0547 441 :LV 1e42A 873 :VY T0547 444 :FS 1e42A 876 :IA Number of specific fragments extracted= 3 number of extra gaps= 2 total=46131 # 1ou8A.437.21 read from T0547.t2k.many.frag # found chain 1ou8A in training set Warning: unaligning (T0547)R439 (1ou8A)S24 because L (left) conformation "forbidden" or filtered. T0547 437 :QE 1ou8A 22 :DN T0547 440 :YLVNFS 1ou8A 25 :FTPYLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46133 # 2cfeA.437.120 read from T0547.t2k.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)E438 (2cfeA)G122 because T (delta_L) conformation "forbidden" or filtered. T0547 437 :Q 2cfeA 121 :D T0547 439 :RYLVNFS 2cfeA 123 :KHVVFGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=46135 # 1m4jA.437.20 read from T0547.t2k.many.frag # found chain 1m4jA in training set T0547 437 :QERYLVNFS 1m4jA 21 :RNGKYRLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46136 1vlrA expands to /projects/compbio/data/pdb/1vlr.pdb.gz 1vlrA:Skipped atom 129, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 131, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 133, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 135, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 137, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 139, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 141, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 566, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 568, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 570, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 572, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 574, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 576, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 578, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 580, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 956, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 958, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 960, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1228, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1230, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1232, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1234, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1236, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1238, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1419, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1421, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1423, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1425, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1427, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1429, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1431, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1433, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1498, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1500, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1502, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1504, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1506, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1508, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1510, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1512, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1514, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1516, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1518, because occupancy 0.500 <= existing 0.500 in 1vlrA # 1vlrA.437.224 read from T0547.t2k.many.frag # adding 1vlrA to template set # found chain 1vlrA in template set T0547 437 :QERYLVNFS 1vlrA 213 :DDLYLIAIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=46137 # 1srqA.437.214 read from T0547.t2k.many.frag # found chain 1srqA in template set T0547 437 :QERYLVNFS 1srqA 289 :GNDIVAVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46138 # 1wtjA.437.137 read from T0547.t2k.many.frag # found chain 1wtjA in training set Warning: unaligning (T0547)Y440 (1wtjA)G141 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1wtjA)A144 because E (beta_S) conformation "forbidden" or filtered. T0547 437 :QER 1wtjA 138 :AEQ T0547 441 :LV 1wtjA 142 :LV T0547 444 :FS 1wtjA 145 :LS Number of specific fragments extracted= 3 number of extra gaps= 2 total=46141 # 1kq1A.437.16 read from T0547.t2k.many.frag # found chain 1kq1A in training set T0547 437 :QERYLVNFS 1kq1A 17 :ANQTEVTVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46142 # 1rkuA.437.141 read from T0547.t2k.many.frag # found chain 1rkuA in training set Warning: unaligning (T0547)Y440 (1rkuA)Y144 because L (left) conformation "forbidden" or filtered. T0547 437 :QER 1rkuA 141 :KSL T0547 441 :LVNFS 1rkuA 145 :YRVIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=46144 # 1p30A.437.894 read from T0547.t2k.many.frag # found chain 1p30A in template set Warning: unaligning (T0547)R439 (1p30A)S896 because Y (epsilon') conformation "forbidden" or filtered. T0547 437 :QE 1p30A 894 :AN T0547 440 :YLVNFS 1p30A 897 :AHALDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=46146 1jc9A expands to /projects/compbio/data/pdb/1jc9.pdb.gz 1jc9A:# 1jc9A.437.84 read from T0547.t2k.many.frag # adding 1jc9A to template set # found chain 1jc9A in template set Warning: unaligning (T0547)Q437 (1jc9A)D85 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (1jc9A)G86 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1jc9A)V91 because P (beta_P) conformation "forbidden" or filtered. T0547 439 :RYLV 1jc9A 87 :GGWT T0547 444 :FS 1jc9A 92 :IQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=46148 # 1y08A.437.227 read from T0547.t2k.many.frag # found chain 1y08A in template set T0547 437 :QERYLVNFS 1y08A 244 :TEGKALGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=46149 # 2bukA.437.121 read from T0547.t2k.many.frag # found chain 2bukA in template set Warning: unaligning (T0547)R439 (2bukA)K123 because L (left) conformation "forbidden" or filtered. T0547 437 :QE 2bukA 121 :QQ T0547 440 :YLVNFS 2bukA 124 :RFTILK Number of specific fragments extracted= 2 number of extra gaps= 1 total=46151 # 1knwA.438.398 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E438 (1knwA)N399 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1knwA)G400 because T (delta_L) conformation "forbidden" or filtered. T0547 440 :YLVNFSL 1knwA 401 :QARLIRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=46152 # 1uv4A.438.192 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)E438 (1uv4A)N193 because L (left) conformation "forbidden" or filtered. T0547 439 :RYLVNFSL 1uv4A 194 :GYYYLMVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=46153 # 1kzfA.438.79 read from T0547.t2k.many.frag # found chain 1kzfA in training set Warning: unaligning (T0547)R439 (1kzfA)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 438 :E 1kzfA 60 :E T0547 440 :YLVNFSL 1kzfA 62 :QLVCSVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=46155 # 1lyqA.438.63 read from T0547.t2k.many.frag # found chain 1lyqA in training set Warning: unaligning (T0547)R439 (1lyqA)P65 because P (beta_P) conformation "forbidden" or filtered. T0547 438 :E 1lyqA 64 :D T0547 440 :YLVNFSL 1lyqA 66 :KSMVIIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=46157 # 2bduA.438.273 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 438 :ERYLVNFSL 2bduA 274 :DSYDIVLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46158 # 1h2wA.438.242 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)R439 (1h2wA)G244 because T (delta_L) conformation "forbidden" or filtered. T0547 438 :E 1h2wA 243 :D T0547 440 :YLVNFSL 1h2wA 245 :RYVLLSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=46160 # 1ng0A.438.149 read from T0547.t2k.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)L441 (1ng0A)S153 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1ng0A)T155 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :ERY 1ng0A 150 :SST T0547 442 :V 1ng0A 154 :F T0547 444 :FSL 1ng0A 156 :TSN Number of specific fragments extracted= 3 number of extra gaps= 2 total=46163 # 2acvA.438.347 read from T0547.t2k.many.frag # found chain 2acvA in template set Warning: unaligning (T0547)V442 (2acvA)G352 because G (3-10) conformation "forbidden" or filtered. T0547 438 :ERYL 2acvA 348 :HKAI T0547 443 :NFSL 2acvA 353 :GFVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=46165 # 1pgl2.438.143 read from T0547.t2k.many.frag # found chain 1pgl2 in template set T0547 438 :ERYLVNFSL 1pgl2 144 :TGFHCDIIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=46166 # 2cfeA.438.121 read from T0547.t2k.many.frag # found chain 2cfeA in training set T0547 438 :ERYLVNFSL 2cfeA 122 :GKHVVFGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=46167 # 1stfI.438.60 read from T0547.t2k.many.frag # found chain 1stfI in template set T0547 438 :ERYLVNFSL 1stfI 68 :DEDFVHLRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=46168 # 1s7iA.438.44 read from T0547.t2k.many.frag # found chain 1s7iA in training set T0547 438 :ERYLVNFSL 1s7iA 45 :AGHYIASHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46169 # 1t3yA.438.52 read from T0547.t2k.many.frag # found chain 1t3yA in training set T0547 438 :ERYLVNFSL 1t3yA 54 :DDVRLFAFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=46170 # 2dpmA.438.230 read from T0547.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)Y440 (2dpmA)G233 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (2dpmA)V236 because E (beta_S) conformation "forbidden" or filtered. T0547 438 :ER 2dpmA 231 :DT T0547 441 :LV 2dpmA 234 :AY T0547 444 :FSL 2dpmA 237 :MLS Number of specific fragments extracted= 3 number of extra gaps= 2 total=46173 # 1e42A.438.190 read from T0547.t2k.many.frag # found chain 1e42A in template set T0547 438 :ERYLVNFSL 1e42A 870 :NNNVYTIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46174 # 2asbA.438.97 read from T0547.t2k.many.frag # found chain 2asbA in training set Warning: unaligning (T0547)R439 (2asbA)G203 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (2asbA)A209 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :E 2asbA 202 :D T0547 440 :YLVNF 2asbA 204 :SVEIV T0547 446 :L 2asbA 210 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=46177 # 2bh1A.438.25 read from T0547.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)N443 (2bh1A)A31 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :ERYLV 2bh1A 26 :QQEVI T0547 444 :FSL 2bh1A 32 :SGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=46179 # 1ou8A.438.22 read from T0547.t2k.many.frag # found chain 1ou8A in training set T0547 438 :ERYLVNFSL 1ou8A 23 :NSFTPYLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=46180 2bswA expands to /projects/compbio/data/pdb/2bsw.pdb.gz 2bswA:Skipped atom 147, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 148, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 149, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 150, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 151, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 152, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 153, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 154, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 155, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 156, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 157, because occupancy 0.500 <= existing 0.500 in 2bswA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 872, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 873, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 874, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 875, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 876, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 877, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1010, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1011, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1012, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1013, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1014, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1015, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1016, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1017, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1018, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1028, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1029, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1030, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1031, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1032, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1033, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1035, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1041, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1042, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1043, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1044, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1054, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1055, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1056, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1057, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1058, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1059, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1060, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1061, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1062, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1070, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1071, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1072, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1073, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1074, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1075, because occupancy 0.500 <= existing 0.500 in 2bswA Skipped atom 1076, because occupancy 0.500 <= existing 0.500 in 2bswA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2bswA.438.46 read from T0547.t2k.many.frag # adding 2bswA to template set # found chain 2bswA in template set Warning: unaligning (T0547)E438 (2bswA)G47 because L (left) conformation "forbidden" or filtered. T0547 439 :RYLVNFSL 2bswA 48 :GKLISIAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=46181 # 1yvvA.438.206 read from T0547.t2k.many.frag # found chain 1yvvA in template set Warning: unaligning (T0547)R439 (1yvvA)S208 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :E 1yvvA 207 :D T0547 440 :YLVNFSL 1yvvA 209 :PLDWLAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=46183 # 1l8bA.438.29 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 438 :ERYLVNFSL 1l8bA 57 :QANLRLISK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46184 # 1ylnA.438.86 read from T0547.t2k.many.frag # found chain 1ylnA in template set Warning: unaligning (T0547)R439 (1ylnA)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 438 :E 1ylnA 87 :E T0547 440 :YLVNFSL 1ylnA 89 :FWMNIRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=46186 # 1h6dA.438.278 read from T0547.t2k.many.frag # found chain 1h6dA in template set Warning: unaligning (T0547)E438 (1h6dA)G279 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1h6dA)E280 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V442 (1h6dA)I283 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L446 (1h6dA)A287 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YL 1h6dA 281 :EP T0547 443 :NFS 1h6dA 284 :EVR Number of specific fragments extracted= 2 number of extra gaps= 3 total=46188 # 1m4jA.438.21 read from T0547.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)R439 (1m4jA)G23 because T (delta_L) conformation "forbidden" or filtered. T0547 438 :E 1m4jA 22 :N T0547 440 :YLVNFSL 1m4jA 24 :KYRLLKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=46190 # 1gvhA.438.213 read from T0547.t2k.many.frag # found chain 1gvhA in template set Warning: unaligning (T0547)N443 (1gvhA)I219 because E (beta_S) conformation "forbidden" or filtered. T0547 438 :ERYLV 1gvhA 214 :GKGYR T0547 444 :FSL 1gvhA 220 :AVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=46192 # 1zhxA.438.245 read from T0547.t2k.many.frag # found chain 1zhxA in training set T0547 438 :ERYLVNFSL 1zhxA 242 :KKNSFKARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=46193 # 2a8kA.438.37 read from T0547.t2k.many.frag # found chain 2a8kA in template set T0547 438 :ERYLVNFSL 2a8kA 38 :NGATGTSFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46194 # 1iicA.438.286 read from T0547.t2k.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)R439 (1iicA)G321 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L446 (1iicA)S328 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :E 1iicA 320 :D T0547 440 :YLVNFS 1iicA 322 :KITDFF Number of specific fragments extracted= 2 number of extra gaps= 2 total=46196 # 1wtjA.438.138 read from T0547.t2k.many.frag # found chain 1wtjA in training set Warning: unaligning (T0547)Y440 (1wtjA)G141 because T (delta_L) conformation "forbidden" or filtered. T0547 438 :ER 1wtjA 139 :EQ T0547 441 :LVNFSL 1wtjA 142 :LVALSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=46198 # 1p30A.438.895 read from T0547.t2k.many.frag # found chain 1p30A in template set Warning: unaligning (T0547)R439 (1p30A)S896 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :E 1p30A 895 :N T0547 440 :YLVNFSL 1p30A 897 :AHALDMT Number of specific fragments extracted= 2 number of extra gaps= 1 total=46200 # 1knwA.439.399 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)R439 (1knwA)G400 because T (delta_L) conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1knwA 401 :QARLIRRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=46201 # 1uv4A.439.193 read from T0547.t2k.many.frag # found chain 1uv4A in training set T0547 439 :RYLVNFSLF 1uv4A 194 :GYYYLMVSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46202 # 1h2wA.439.243 read from T0547.t2k.many.frag # found chain 1h2wA in training set T0547 439 :RYLVNFSLF 1h2wA 244 :GRYVLLSIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=46203 # 1kzfA.439.80 read from T0547.t2k.many.frag # found chain 1kzfA in training set Warning: unaligning (T0547)R439 (1kzfA)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1kzfA 62 :QLVCSVRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=46204 # 1ng0A.439.150 read from T0547.t2k.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)L441 (1ng0A)S153 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1ng0A)T155 because Y (epsilon') conformation "forbidden" or filtered. T0547 439 :RY 1ng0A 151 :ST T0547 442 :V 1ng0A 154 :F T0547 444 :FSLF 1ng0A 156 :TSNV Number of specific fragments extracted= 3 number of extra gaps= 2 total=46207 # 2bduA.439.274 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)L446 (2bduA)K282 because L (left) conformation "forbidden" or filtered. T0547 439 :RYLVNFS 2bduA 275 :SYDIVLV T0547 447 :F 2bduA 283 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=46209 # 1l8bA.439.30 read from T0547.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)S445 (1l8bA)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 439 :RYLVNF 1l8bA 58 :ANLRLI T0547 446 :LF 1l8bA 65 :KF Number of specific fragments extracted= 2 number of extra gaps= 1 total=46211 # 1lyqA.439.64 read from T0547.t2k.many.frag # found chain 1lyqA in training set Warning: unaligning (T0547)N443 (1lyqA)V69 because E (beta_S) conformation "forbidden" or filtered. T0547 439 :RYLV 1lyqA 65 :PKSM T0547 444 :FSLF 1lyqA 70 :IIPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=46213 # 2cfeA.439.122 read from T0547.t2k.many.frag # found chain 2cfeA in training set T0547 439 :RYLVNFSLF 2cfeA 123 :KHVVFGEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=46214 # 1pgl2.439.144 read from T0547.t2k.many.frag # found chain 1pgl2 in template set T0547 439 :RYLVNFSLF 1pgl2 145 :GFHCDIICV Number of specific fragments extracted= 1 number of extra gaps= 0 total=46215 # 1s7iA.439.45 read from T0547.t2k.many.frag # found chain 1s7iA in training set Warning: unaligning (T0547)R439 (1s7iA)G46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1s7iA)A50 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YLV 1s7iA 47 :HYI T0547 444 :FSLF 1s7iA 51 :SHAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=46217 # 1stfI.439.61 read from T0547.t2k.many.frag # found chain 1stfI in template set T0547 439 :RYLVNFSLF 1stfI 92 :EDFVHLRVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46218 # 2dpmA.439.231 read from T0547.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)Y440 (2dpmA)G233 because T (delta_L) conformation "forbidden" or filtered. T0547 439 :R 2dpmA 232 :T T0547 441 :LVNFSLF 2dpmA 234 :AYVMLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=46220 # 2bh1A.439.26 read from T0547.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)N443 (2bh1A)A31 because Y (epsilon') conformation "forbidden" or filtered. T0547 439 :RYLV 2bh1A 27 :QEVI T0547 444 :FSLF 2bh1A 32 :SGQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46222 # 2acvA.439.348 read from T0547.t2k.many.frag # found chain 2acvA in template set Warning: unaligning (T0547)V442 (2acvA)G352 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (2acvA)G353 because Y (epsilon') conformation "forbidden" or filtered. T0547 439 :RYL 2acvA 349 :KAI T0547 444 :FSLF 2acvA 354 :FVSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=46224 # 1yvvA.439.207 read from T0547.t2k.many.frag # found chain 1yvvA in template set T0547 439 :RYLVNFSLF 1yvvA 208 :SPLDWLARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=46225 # 1zhxA.439.246 read from T0547.t2k.many.frag # found chain 1zhxA in training set T0547 439 :RYLVNFSLF 1zhxA 243 :KNSFKARIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46226 # 1e42A.439.191 read from T0547.t2k.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)Y440 (1e42A)N872 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1e42A)T875 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1e42A)A877 because Y (epsilon') conformation "forbidden" or filtered. T0547 439 :R 1e42A 871 :N T0547 441 :LV 1e42A 873 :VY T0547 444 :F 1e42A 876 :I T0547 446 :LF 1e42A 878 :KR Number of specific fragments extracted= 4 number of extra gaps= 3 total=46230 # 1h6dA.439.279 read from T0547.t2k.many.frag # found chain 1h6dA in template set Warning: unaligning (T0547)R439 (1h6dA)E280 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1h6dA)E284 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YLV 1h6dA 281 :EPI T0547 444 :FSLF 1h6dA 285 :VRAY Number of specific fragments extracted= 2 number of extra gaps= 2 total=46232 # 1c8uA.439.175 read from T0547.t2k.many.frag # found chain 1c8uA in template set T0547 439 :RYLVNFSLF 1c8uA 177 :HRQVWIRAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=46233 # 2bswA.439.47 read from T0547.t2k.many.frag # found chain 2bswA in template set T0547 439 :RYLVNFSLF 2bswA 48 :GKLISIASF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46234 # 1ylnA.439.87 read from T0547.t2k.many.frag # found chain 1ylnA in template set Warning: unaligning (T0547)R439 (1ylnA)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1ylnA 89 :FWMNIRAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=46235 # 1ou8A.439.23 read from T0547.t2k.many.frag # found chain 1ou8A in training set T0547 439 :RYLVNFSLF 1ou8A 24 :SFTPYLVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46236 1u0sA expands to /projects/compbio/data/pdb/1u0s.pdb.gz 1u0sA:Skipped atom 1009, because occupancy 0.500 <= existing 0.500 in 1u0sA Skipped atom 1011, because occupancy 0.500 <= existing 0.500 in 1u0sA Skipped atom 1013, because occupancy 0.500 <= existing 0.500 in 1u0sA Skipped atom 1015, because occupancy 0.500 <= existing 0.500 in 1u0sA Skipped atom 1017, because occupancy 0.500 <= existing 0.500 in 1u0sA Skipped atom 1019, because occupancy 0.500 <= existing 0.500 in 1u0sA Skipped atom 1021, because occupancy 0.500 <= existing 0.500 in 1u0sA Skipped atom 1023, because occupancy 0.500 <= existing 0.500 in 1u0sA Skipped atom 1025, because occupancy 0.500 <= existing 0.500 in 1u0sA # 1u0sA.439.31 read from T0547.t2k.many.frag # adding 1u0sA to template set # found chain 1u0sA in template set Warning: unaligning (T0547)Y440 (1u0sA)K207 because L (left) conformation "forbidden" or filtered. T0547 439 :R 1u0sA 206 :L T0547 441 :LVNFSLF 1u0sA 208 :CEVVRTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=46238 # 1t3yA.439.53 read from T0547.t2k.many.frag # found chain 1t3yA in training set Warning: unaligning (T0547)V442 (1t3yA)L58 because Y (epsilon') conformation "forbidden" or filtered. T0547 439 :RYL 1t3yA 55 :DVR T0547 443 :NFSLF 1t3yA 59 :FAFVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=46240 1guiA expands to /projects/compbio/data/pdb/1gui.pdb.gz 1guiA:Skipped atom 541, because occupancy 0.500 <= existing 0.500 in 1guiA Skipped atom 542, because occupancy 0.500 <= existing 0.500 in 1guiA Skipped atom 543, because occupancy 0.500 <= existing 0.500 in 1guiA # 1guiA.439.43 read from T0547.t2k.many.frag # adding 1guiA to template set # found chain 1guiA in template set Warning: unaligning (T0547)Y440 (1guiA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 439 :R 1guiA 46 :D T0547 441 :LVNFSLF 1guiA 48 :YAYITIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=46242 # 2acaA.439.58 read from T0547.t2k.many.frag # found chain 2acaA in template set Warning: unaligning (T0547)R439 (2acaA)G59 because L (left) conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 2acaA 60 :KSLVLREI Number of specific fragments extracted= 1 number of extra gaps= 1 total=46243 # 1sqwA.439.138 read from T0547.t2k.many.frag # found chain 1sqwA in template set T0547 439 :RYLVNFSLF 1sqwA 139 :IPLGFGVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46244 # 1z6fA.439.293 read from T0547.t2k.many.frag # found chain 1z6fA in training set T0547 439 :RYLVNFSLF 1z6fA 294 :KDVYLTIPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=46245 # 1x99A.439.3 read from T0547.t2k.many.frag # found chain 1x99A in training set T0547 439 :RYLVNFSLF 1x99A 4 :SYSITLRVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46246 # 1knwA.440.400 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 440 :YLVNFSLFQ 1knwA 401 :QARLIRRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=46247 # 1uv4A.440.194 read from T0547.t2k.many.frag # found chain 1uv4A in training set T0547 440 :YLVNFSLFQ 1uv4A 195 :YYYLMVSFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46248 # 1h2wA.440.244 read from T0547.t2k.many.frag # found chain 1h2wA in training set T0547 440 :YLVNFSLFQ 1h2wA 245 :RYVLLSIRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=46249 # 1kzfA.440.81 read from T0547.t2k.many.frag # found chain 1kzfA in training set Warning: unaligning (T0547)N443 (1kzfA)C65 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YLV 1kzfA 62 :QLV T0547 444 :FSLFQ 1kzfA 66 :SVRFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=46251 # 1l8bA.440.31 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 440 :YLVNFSLFQ 1l8bA 59 :NLRLISKFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46252 # 1ng0A.440.151 read from T0547.t2k.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)L441 (1ng0A)S153 because L (left) conformation "forbidden" or filtered. T0547 440 :Y 1ng0A 152 :T T0547 442 :VNFSLFQ 1ng0A 154 :FTTSNVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=46254 # 1lyqA.440.65 read from T0547.t2k.many.frag # found chain 1lyqA in training set Warning: unaligning (T0547)Y440 (1lyqA)K66 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1lyqA)E74 because Y (epsilon') conformation "forbidden" or filtered. T0547 441 :LVNFSLF 1lyqA 67 :SMVIIPR Number of specific fragments extracted= 1 number of extra gaps= 2 total=46255 # 2bduA.440.275 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)L446 (2bduA)K282 because L (left) conformation "forbidden" or filtered. T0547 440 :YLVNFS 2bduA 276 :YDIVLV T0547 447 :FQ 2bduA 283 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=46257 # 2cfeA.440.123 read from T0547.t2k.many.frag # found chain 2cfeA in training set T0547 440 :YLVNFSLFQ 2cfeA 124 :HVVFGEVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=46258 # 1pgl2.440.145 read from T0547.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0547)N443 (1pgl2)D149 because E (beta_S) conformation "forbidden" or filtered. T0547 440 :YLV 1pgl2 146 :FHC T0547 444 :FSLFQ 1pgl2 150 :IICVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=46260 # 1s7iA.440.46 read from T0547.t2k.many.frag # found chain 1s7iA in training set Warning: unaligning (T0547)Q448 (1s7iA)Q55 because P (beta_P) conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1s7iA 47 :HYIASHAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=46261 # 1stfI.440.62 read from T0547.t2k.many.frag # found chain 1stfI in template set T0547 440 :YLVNFSLFQ 1stfI 93 :DFVHLRVFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=46262 # 1c8uA.440.176 read from T0547.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)S445 (1c8uA)R183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1c8uA)G186 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YLVNF 1c8uA 178 :RQVWI T0547 446 :LF 1c8uA 184 :AN Number of specific fragments extracted= 2 number of extra gaps= 2 total=46264 # 1zhxA.440.247 read from T0547.t2k.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)Y440 (1zhxA)N244 because L (left) conformation "forbidden" or filtered. T0547 441 :LVNFSLFQ 1zhxA 245 :SFKARIYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=46265 # 2bh1A.440.27 read from T0547.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)N443 (2bh1A)A31 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (2bh1A)G33 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YLV 2bh1A 28 :EVI T0547 444 :F 2bh1A 32 :S T0547 446 :LFQ 2bh1A 34 :QVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=46268 # 2dpmA.440.232 read from T0547.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)Y440 (2dpmA)G233 because T (delta_L) conformation "forbidden" or filtered. T0547 441 :LVNFSLFQ 2dpmA 234 :AYVMLSNS Number of specific fragments extracted= 1 number of extra gaps= 1 total=46269 # 1yvvA.440.208 read from T0547.t2k.many.frag # found chain 1yvvA in template set T0547 440 :YLVNFSLFQ 1yvvA 209 :PLDWLARNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=46270 # 1sqwA.440.139 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)Q448 (1sqwA)K148 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1sqwA 140 :PLGFGVAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=46271 # 1z6fA.440.294 read from T0547.t2k.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)N443 (1z6fA)L298 because E (beta_S) conformation "forbidden" or filtered. T0547 440 :YLV 1z6fA 295 :DVY T0547 444 :FSLFQ 1z6fA 299 :TIPRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=46273 # 1u0sA.440.32 read from T0547.t2k.many.frag # found chain 1u0sA in template set Warning: unaligning (T0547)Q448 (1u0sA)P215 because C (cis) conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1u0sA 207 :KCEVVRTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=46274 # 1x99A.440.4 read from T0547.t2k.many.frag # found chain 1x99A in training set T0547 440 :YLVNFSLFQ 1x99A 5 :YSITLRVYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=46275 # 1ylnA.440.88 read from T0547.t2k.many.frag # found chain 1ylnA in template set Warning: unaligning (T0547)N443 (1ylnA)N92 because E (beta_S) conformation "forbidden" or filtered. T0547 440 :YLV 1ylnA 89 :FWM T0547 444 :FSLFQ 1ylnA 93 :IRAIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=46277 # 1ou8A.440.24 read from T0547.t2k.many.frag # found chain 1ou8A in training set T0547 440 :YLVNFSLFQ 1ou8A 25 :FTPYLVVDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46278 # 1h6dA.440.280 read from T0547.t2k.many.frag # found chain 1h6dA in template set Warning: unaligning (T0547)N443 (1h6dA)E284 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L446 (1h6dA)A287 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YLV 1h6dA 281 :EPI T0547 444 :FS 1h6dA 285 :VR T0547 447 :FQ 1h6dA 288 :YT Number of specific fragments extracted= 3 number of extra gaps= 2 total=46281 # 2acaA.440.59 read from T0547.t2k.many.frag # found chain 2acaA in template set T0547 440 :YLVNFSLFQ 2acaA 60 :KSLVLREIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=46282 # 2bswA.440.48 read from T0547.t2k.many.frag # found chain 2bswA in template set T0547 440 :YLVNFSLFQ 2bswA 49 :KLISIASFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=46283 # 1t3yA.440.54 read from T0547.t2k.many.frag # found chain 1t3yA in training set T0547 440 :YLVNFSLFQ 1t3yA 56 :VRLFAFVRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46284 # 1guiA.440.44 read from T0547.t2k.many.frag # found chain 1guiA in template set Warning: unaligning (T0547)Y440 (1guiA)G47 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1guiA)T52 because P (beta_P) conformation "forbidden" or filtered. T0547 441 :LVNF 1guiA 48 :YAYI T0547 446 :LFQ 1guiA 53 :IAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=46286 # 1em2A.440.130 read from T0547.t2k.many.frag # found chain 1em2A in template set Warning: unaligning (T0547)N443 (1em2A)N349 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 because of BadResidue code BAD_PEPTIDE in next template residue (1em2A)R352 Warning: unaligning (T0547)L446 because of BadResidue code BAD_PEPTIDE at template residue (1em2A)R352 T0547 440 :YLV 1em2A 346 :DFV T0547 444 :F 1em2A 350 :V T0547 447 :FQ 1em2A 353 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=46289 # 1e42A.440.192 read from T0547.t2k.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)N443 (1e42A)T875 because P (beta_P) conformation "forbidden" or filtered. T0547 440 :YLV 1e42A 872 :NVY T0547 444 :FSLFQ 1e42A 876 :IAKRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=46291 # 1knwA.441.401 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 441 :LVNFSLFQS 1knwA 402 :ARLIRRRQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=46292 # 1l8bA.441.32 read from T0547.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)S445 (1l8bA)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 441 :LVNF 1l8bA 60 :LRLI T0547 446 :LFQS 1l8bA 65 :KFDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=46294 # 1uv4A.441.195 read from T0547.t2k.many.frag # found chain 1uv4A in training set T0547 441 :LVNFSLFQS 1uv4A 196 :YYLMVSFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46295 # 1kzfA.441.82 read from T0547.t2k.many.frag # found chain 1kzfA in training set Warning: unaligning (T0547)N443 (1kzfA)C65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F444 (1kzfA)S66 because Y (epsilon') conformation "forbidden" or filtered. T0547 441 :LV 1kzfA 63 :LV T0547 445 :SLFQS 1kzfA 67 :VRFTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=46297 # 1lyqA.441.66 read from T0547.t2k.many.frag # found chain 1lyqA in training set Warning: unaligning (T0547)S449 (1lyqA)P75 because P (beta_P) conformation "forbidden" or filtered. T0547 441 :LVNFSLFQ 1lyqA 67 :SMVIIPRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=46298 # 1h2wA.441.245 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)Q448 (1h2wA)E253 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1h2wA)G254 because S (epsilon) conformation "forbidden" or filtered. T0547 441 :LVNFSLF 1h2wA 246 :YVLLSIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=46299 # 1ng0A.441.152 read from T0547.t2k.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)N443 (1ng0A)T155 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F444 (1ng0A)T156 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1ng0A)S157 because Y (epsilon') conformation "forbidden" or filtered. T0547 441 :LV 1ng0A 153 :SF T0547 446 :LFQS 1ng0A 158 :NVWG Number of specific fragments extracted= 2 number of extra gaps= 1 total=46301 # 2bduA.441.276 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)N443 (2bduA)V279 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L446 (2bduA)K282 because L (left) conformation "forbidden" or filtered. T0547 441 :LV 2bduA 277 :DI T0547 444 :FS 2bduA 280 :LV T0547 447 :FQS 2bduA 283 :EES Number of specific fragments extracted= 3 number of extra gaps= 2 total=46304 # 2cfeA.441.124 read from T0547.t2k.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)S449 (2cfeA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 441 :LVNFSLFQ 2cfeA 125 :VVFGEVID Number of specific fragments extracted= 1 number of extra gaps= 1 total=46305 # 1pgl2.441.146 read from T0547.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0547)S449 (1pgl2)G155 because P (beta_P) conformation "forbidden" or filtered. T0547 441 :LVNFSLFQ 1pgl2 147 :HCDIICVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=46306 # 1sqwA.441.140 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)Q448 (1sqwA)K148 because Y (epsilon') conformation "forbidden" or filtered. T0547 441 :LVNFSLF 1sqwA 141 :LGFGVAA T0547 449 :S 1sqwA 149 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=46308 # 1c8uA.441.177 read from T0547.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)S445 (1c8uA)R183 because Y (epsilon') conformation "forbidden" or filtered. T0547 441 :LVNF 1c8uA 179 :QVWI T0547 446 :LFQS 1c8uA 184 :ANGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=46310 # 1stfI.441.63 read from T0547.t2k.many.frag # found chain 1stfI in template set T0547 441 :LVNFSLFQS 1stfI 94 :FVHLRVFQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=46311 # 1s7iA.441.47 read from T0547.t2k.many.frag # found chain 1s7iA in training set Warning: unaligning (T0547)Q448 (1s7iA)Q55 because P (beta_P) conformation "forbidden" or filtered. T0547 441 :LVNFSLF 1s7iA 48 :YIASHAL T0547 449 :S 1s7iA 56 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=46313 # 1zhxA.441.248 read from T0547.t2k.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)S449 (1zhxA)D253 because Y (epsilon') conformation "forbidden" or filtered. T0547 441 :LVNFSLFQ 1zhxA 245 :SFKARIYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=46314 # 1vlrA.441.228 read from T0547.t2k.many.frag # found chain 1vlrA in template set Warning: unaligning (T0547)Q448 (1vlrA)R224 because P (beta_P) conformation "forbidden" or filtered. T0547 441 :LVNFSLF 1vlrA 217 :LIAICHR T0547 449 :S 1vlrA 225 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=46316 # 1z6fA.441.295 read from T0547.t2k.many.frag # found chain 1z6fA in training set T0547 441 :LVNFSLFQS 1z6fA 296 :VYLTIPRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=46317 # 2bh1A.441.28 read from T0547.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)N443 (2bh1A)A31 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (2bh1A)G37 because S (epsilon) conformation "forbidden" or filtered. T0547 441 :LV 2bh1A 29 :VI T0547 444 :FSLFQ 2bh1A 32 :SGQVA Number of specific fragments extracted= 2 number of extra gaps= 2 total=46319 # 1vcc.441.40 read from T0547.t2k.many.frag # found chain 1vcc in training set T0547 441 :LVNFSLFQS 1vcc 41 :TDVVVYEQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=46320 # 1x99A.441.5 read from T0547.t2k.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)Q448 (1x99A)Q13 because E (beta_S) conformation "forbidden" or filtered. T0547 441 :LVNFSLF 1x99A 6 :SITLRVY T0547 449 :S 1x99A 14 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=46322 # 2dpmA.441.233 read from T0547.t2k.many.frag # found chain 2dpmA in training set T0547 441 :LVNFSLFQS 2dpmA 234 :AYVMLSNSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=46323 # 1u0sA.441.33 read from T0547.t2k.many.frag # found chain 1u0sA in template set Warning: unaligning (T0547)Q448 (1u0sA)P215 because C (cis) conformation "forbidden" or filtered. T0547 441 :LVNFSLF 1u0sA 208 :CEVVRTI T0547 449 :S 1u0sA 216 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=46325 # 1ylnA.441.89 read from T0547.t2k.many.frag # found chain 1ylnA in template set T0547 441 :LVNFSLFQS 1ylnA 90 :WMNIRAISP Number of specific fragments extracted= 1 number of extra gaps= 0 total=46326 # 1yvvA.441.209 read from T0547.t2k.many.frag # found chain 1yvvA in template set T0547 441 :LVNFSLFQS 1yvvA 210 :LDWLARNRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=46327 # 1em2A.441.131 read from T0547.t2k.many.frag # found chain 1em2A in template set Warning: unaligning (T0547)S445 because of BadResidue code BAD_PEPTIDE in next template residue (1em2A)R352 Warning: unaligning (T0547)L446 because of BadResidue code BAD_PEPTIDE at template residue (1em2A)R352 T0547 441 :LVNF 1em2A 347 :FVNV T0547 447 :FQS 1em2A 353 :IER Number of specific fragments extracted= 2 number of extra gaps= 1 total=46329 # 1dkmA.441.347 read from T0547.t2k.many.frag # found chain 1dkmA in template set Warning: unaligning (T0547)N443 (1dkmA)V350 because E (beta_S) conformation "forbidden" or filtered. T0547 441 :LV 1dkmA 348 :IQ T0547 444 :FSLFQS 1dkmA 351 :SLVFQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=46331 # 1gvhA.441.216 read from T0547.t2k.many.frag # found chain 1gvhA in template set T0547 441 :LVNFSLFQS 1gvhA 217 :YRIAVKREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=46332 # 1ou8A.441.25 read from T0547.t2k.many.frag # found chain 1ou8A in training set T0547 441 :LVNFSLFQS 1ou8A 26 :TPYLVVDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=46333 1ewnA expands to /projects/compbio/data/pdb/1ewn.pdb.gz 1ewnA:# 1ewnA.441.98 read from T0547.t2k.many.frag # adding 1ewnA to template set # found chain 1ewnA in template set Warning: unaligning (T0547)L441 (1ewnA)C178 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1ewnA)L180 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1ewnA)P186 because P (beta_P) conformation "forbidden" or filtered. T0547 442 :V 1ewnA 179 :V T0547 444 :FSLFQ 1ewnA 181 :LRALE Number of specific fragments extracted= 2 number of extra gaps= 3 total=46335 # 1v3eA.441.123 read from T0547.t2k.many.frag # found chain 1v3eA in template set T0547 441 :LVNFSLFQS 1v3eA 265 :VYQLCSTPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46336 # 1l8bA.442.33 read from T0547.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)S445 (1l8bA)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :VNF 1l8bA 61 :RLI T0547 446 :LFQSM 1l8bA 65 :KFDTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46338 # 1knwA.442.402 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 442 :VNFSLFQSM 1knwA 403 :RLIRRRQTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=46339 # 1lyqA.442.67 read from T0547.t2k.many.frag # found chain 1lyqA in training set Warning: unaligning (T0547)M450 (1lyqA)L76 because P (beta_P) conformation "forbidden" or filtered. T0547 442 :VNFSLFQS 1lyqA 68 :MVIIPREP Number of specific fragments extracted= 1 number of extra gaps= 1 total=46340 # 2cfeA.442.125 read from T0547.t2k.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)F447 (2cfeA)I131 because G (3-10) conformation "forbidden" or filtered. T0547 442 :VNFSL 2cfeA 126 :VFGEV T0547 448 :QSM 2cfeA 132 :DGM Number of specific fragments extracted= 2 number of extra gaps= 1 total=46342 # 1uv4A.442.196 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE in next template residue (1uv4A)C206 T0547 442 :VNFSLFQS 1uv4A 197 :YLMVSFDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=46343 # 1kzfA.442.83 read from T0547.t2k.many.frag # found chain 1kzfA in training set T0547 442 :VNFSLFQSM 1kzfA 64 :VCSVRFTSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46344 # 1sqwA.442.141 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)V442 (1sqwA)G142 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1sqwA)F143 because E (beta_S) conformation "forbidden" or filtered. T0547 444 :FSLFQSM 1sqwA 144 :GVAAKST Number of specific fragments extracted= 1 number of extra gaps= 1 total=46345 # 1h2wA.442.246 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)N443 (1h2wA)L248 because E (beta_S) conformation "forbidden" or filtered. T0547 442 :V 1h2wA 247 :V T0547 444 :FSLFQSM 1h2wA 249 :LSIREGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=46347 # 2bduA.442.277 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)L446 (2bduA)K282 because L (left) conformation "forbidden" or filtered. T0547 442 :VNFS 2bduA 278 :IVLV T0547 447 :FQSM 2bduA 283 :EESL Number of specific fragments extracted= 2 number of extra gaps= 1 total=46349 # 1ng0A.442.153 read from T0547.t2k.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)N443 (1ng0A)T155 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1ng0A)S157 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :V 1ng0A 154 :F T0547 444 :F 1ng0A 156 :T T0547 446 :LFQSM 1ng0A 158 :NVWGG Number of specific fragments extracted= 3 number of extra gaps= 2 total=46352 # 1c8uA.442.178 read from T0547.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)S445 (1c8uA)R183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1c8uA)G186 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :VNF 1c8uA 180 :VWI T0547 446 :LF 1c8uA 184 :AN T0547 449 :SM 1c8uA 187 :SV Number of specific fragments extracted= 3 number of extra gaps= 2 total=46355 # 1vcc.442.41 read from T0547.t2k.many.frag # found chain 1vcc in training set Warning: unaligning (T0547)V442 (1vcc)D42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1vcc)V43 because P (beta_P) conformation "forbidden" or filtered. T0547 444 :FSLFQSM 1vcc 44 :VVYEQTW Number of specific fragments extracted= 1 number of extra gaps= 1 total=46356 # 1stfI.442.64 read from T0547.t2k.many.frag # found chain 1stfI in template set T0547 442 :VNFSLFQSM 1stfI 95 :VHLRVFQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46357 # 1zhxA.442.249 read from T0547.t2k.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)V442 (1zhxA)F246 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1zhxA)K247 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1zhxA)D253 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :FSLFQ 1zhxA 248 :ARIYK T0547 450 :M 1zhxA 254 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=46359 # 1pgl2.442.147 read from T0547.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0547)N443 (1pgl2)D149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (1pgl2)W156 because P (beta_P) conformation "forbidden" or filtered. T0547 442 :V 1pgl2 148 :C T0547 444 :FSLFQS 1pgl2 150 :IICVTG Number of specific fragments extracted= 2 number of extra gaps= 2 total=46361 # 2bh1A.442.29 read from T0547.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)N443 (2bh1A)A31 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (2bh1A)G33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (2bh1A)G37 because S (epsilon) conformation "forbidden" or filtered. T0547 442 :V 2bh1A 30 :I T0547 444 :F 2bh1A 32 :S T0547 446 :LFQ 2bh1A 34 :QVA T0547 450 :M 2bh1A 38 :W Number of specific fragments extracted= 4 number of extra gaps= 3 total=46365 # 2dpmA.442.234 read from T0547.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)F447 (2dpmA)N240 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (2dpmA)S243 because P (beta_P) conformation "forbidden" or filtered. T0547 442 :VNFSL 2dpmA 235 :YVMLS T0547 448 :QS 2dpmA 241 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=46367 # 1dkmA.442.348 read from T0547.t2k.many.frag # found chain 1dkmA in template set T0547 442 :VNFSLFQSM 1dkmA 349 :QVSLVFQTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46368 # 1u0sA.442.34 read from T0547.t2k.many.frag # found chain 1u0sA in template set Warning: unaligning (T0547)Q448 (1u0sA)P215 because C (cis) conformation "forbidden" or filtered. T0547 442 :VNFSLF 1u0sA 209 :EVVRTI T0547 449 :SM 1u0sA 216 :SV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46370 # 1x99A.442.6 read from T0547.t2k.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)N443 (1x99A)T8 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1x99A)Q13 because E (beta_S) conformation "forbidden" or filtered. T0547 442 :V 1x99A 7 :I T0547 444 :FSLF 1x99A 9 :LRVY T0547 449 :SM 1x99A 14 :TN Number of specific fragments extracted= 3 number of extra gaps= 2 total=46373 # 1ou8A.442.26 read from T0547.t2k.many.frag # found chain 1ou8A in training set T0547 442 :VNFSLFQSM 1ou8A 27 :PYLVVDATY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46374 # 1s7iA.442.48 read from T0547.t2k.many.frag # found chain 1s7iA in training set Warning: unaligning (T0547)Q448 (1s7iA)Q55 because P (beta_P) conformation "forbidden" or filtered. T0547 442 :VNFSLF 1s7iA 49 :IASHAL T0547 449 :SM 1s7iA 56 :SV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46376 # 1ylnA.442.90 read from T0547.t2k.many.frag # found chain 1ylnA in template set Warning: unaligning (T0547)N443 (1ylnA)N92 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1ylnA)P98 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (1ylnA)R99 because P (beta_P) conformation "forbidden" or filtered. T0547 442 :V 1ylnA 91 :M T0547 444 :FSLFQ 1ylnA 93 :IRAIS Number of specific fragments extracted= 2 number of extra gaps= 2 total=46378 # 1zx8A.442.108 read from T0547.t2k.many.frag # found chain 1zx8A in template set T0547 442 :VNFSLFQSM 1zx8A 97 :VIGKIVEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46379 # 1em2A.442.132 read from T0547.t2k.many.frag # found chain 1em2A in template set Warning: unaligning (T0547)N443 (1em2A)N349 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 because of BadResidue code BAD_PEPTIDE in next template residue (1em2A)R352 Warning: unaligning (T0547)L446 because of BadResidue code BAD_PEPTIDE at template residue (1em2A)R352 T0547 442 :V 1em2A 348 :V T0547 444 :F 1em2A 350 :V T0547 447 :FQSM 1em2A 353 :IERR Number of specific fragments extracted= 3 number of extra gaps= 2 total=46382 # 1z6fA.442.296 read from T0547.t2k.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)S449 (1z6fA)R304 because G (3-10) conformation "forbidden" or filtered. T0547 442 :VNFSLFQ 1z6fA 297 :YLTIPRG T0547 450 :M 1z6fA 305 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=46384 # 1vlrA.442.229 read from T0547.t2k.many.frag # found chain 1vlrA in template set T0547 442 :VNFSLFQSM 1vlrA 218 :IAICHRRGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=46385 # 1gvhA.442.217 read from T0547.t2k.many.frag # found chain 1gvhA in template set Warning: unaligning (T0547)M450 (1gvhA)G226 because T (delta_L) conformation "forbidden" or filtered. T0547 442 :VNFSLFQS 1gvhA 218 :RIAVKREE Number of specific fragments extracted= 1 number of extra gaps= 1 total=46386 # 1jc9A.442.89 read from T0547.t2k.many.frag # found chain 1jc9A in template set Warning: unaligning (T0547)M450 (1jc9A)Y98 because G (3-10) conformation "forbidden" or filtered. T0547 442 :VNFSLFQS 1jc9A 90 :TVIQRRGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=46387 # 1kr4A.442.24 read from T0547.t2k.many.frag # found chain 1kr4A in training set Warning: unaligning (T0547)S449 (1kr4A)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :VNFSLFQ 1kr4A 9 :LVYSTFP T0547 450 :M 1kr4A 17 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=46389 # 1l8bA.443.34 read from T0547.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)F447 (1l8bA)F66 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NFSL 1l8bA 62 :LISK T0547 448 :QSMP 1l8bA 67 :DTVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=46391 # 1stfI.443.65 read from T0547.t2k.many.frag # found chain 1stfI in template set Warning: unaligning (T0547)N443 (1stfI)H96 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1stfI)Q101 because E (beta_S) conformation "forbidden" or filtered. T0547 444 :FSLF 1stfI 97 :LRVF T0547 449 :SMP 1stfI 102 :SLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=46393 # 2cfeA.443.126 read from T0547.t2k.many.frag # found chain 2cfeA in training set T0547 443 :NFSLFQSMP 2cfeA 127 :FGEVIDGMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=46394 # 1knwA.443.403 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 443 :NFSLFQSMP 1knwA 404 :LIRRRQTIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=46395 # 1kzfA.443.84 read from T0547.t2k.many.frag # found chain 1kzfA in training set Warning: unaligning (T0547)N443 (1kzfA)C65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1kzfA)D73 because G (3-10) conformation "forbidden" or filtered. T0547 444 :FSLFQSM 1kzfA 66 :SVRFTSL Number of specific fragments extracted= 1 number of extra gaps= 2 total=46396 # 1sqwA.443.142 read from T0547.t2k.many.frag # found chain 1sqwA in template set T0547 443 :NFSLFQSMP 1sqwA 143 :FGVAAKSTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=46397 # 1vcc.443.42 read from T0547.t2k.many.frag # found chain 1vcc in training set Warning: unaligning (T0547)S449 (1vcc)T49 because P (beta_P) conformation "forbidden" or filtered. T0547 443 :NFSLFQ 1vcc 43 :VVVYEQ T0547 450 :MP 1vcc 50 :WE Number of specific fragments extracted= 2 number of extra gaps= 1 total=46399 # 1uv4A.443.197 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE in next template residue (1uv4A)C206 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE at template residue (1uv4A)C206 T0547 443 :NFSLFQS 1uv4A 198 :LMVSFDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=46400 # 1lyqA.443.68 read from T0547.t2k.many.frag # found chain 1lyqA in training set Warning: unaligning (T0547)Q448 (1lyqA)E74 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NFSLF 1lyqA 69 :VIIPR T0547 449 :SMP 1lyqA 75 :PLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=46402 # 1h2wA.443.247 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)S449 (1h2wA)G254 because S (epsilon) conformation "forbidden" or filtered. T0547 443 :NFSLFQ 1h2wA 248 :LLSIRE T0547 450 :MP 1h2wA 255 :CD Number of specific fragments extracted= 2 number of extra gaps= 1 total=46404 # 1dkmA.443.349 read from T0547.t2k.many.frag # found chain 1dkmA in template set Warning: unaligning (T0547)F447 (1dkmA)F354 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NFSL 1dkmA 350 :VSLV T0547 448 :QSMP 1dkmA 355 :QTLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=46406 # 2bh1A.443.30 read from T0547.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)S445 (2bh1A)G33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (2bh1A)G37 because S (epsilon) conformation "forbidden" or filtered. T0547 443 :NF 2bh1A 31 :AS T0547 446 :LFQ 2bh1A 34 :QVA T0547 450 :MP 2bh1A 38 :WE Number of specific fragments extracted= 3 number of extra gaps= 2 total=46409 # 1dy5A.443.43 read from T0547.t2k.many.frag # found chain 1dy5A in training set T0547 443 :NFSLFQSMP 1dy5A 44 :NTFVHESLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46410 # 1zhxA.443.250 read from T0547.t2k.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)S449 (1zhxA)D253 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NFSLFQ 1zhxA 247 :KARIYK T0547 450 :MP 1zhxA 254 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=46412 # 1c8uA.443.179 read from T0547.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)S445 (1c8uA)R183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1c8uA)G186 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NF 1c8uA 181 :WI T0547 446 :LF 1c8uA 184 :AN T0547 449 :SMP 1c8uA 187 :SVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=46415 # 1ng0A.443.154 read from T0547.t2k.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)M450 (1ng0A)G162 because T (delta_L) conformation "forbidden" or filtered. T0547 443 :NFSLFQS 1ng0A 155 :TTSNVWG T0547 451 :P 1ng0A 163 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=46417 # 2bduA.443.278 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)L446 (2bduA)K282 because L (left) conformation "forbidden" or filtered. T0547 443 :NFS 2bduA 279 :VLV T0547 447 :FQSMP 2bduA 283 :EESLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=46419 # 2dpmA.443.235 read from T0547.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)N443 (2dpmA)V236 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (2dpmA)S241 because P (beta_P) conformation "forbidden" or filtered. T0547 444 :FSLF 2dpmA 237 :MLSN T0547 449 :SMP 2dpmA 242 :SSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=46421 # 1em2A.443.133 read from T0547.t2k.many.frag # found chain 1em2A in template set Warning: unaligning (T0547)S445 because of BadResidue code BAD_PEPTIDE in next template residue (1em2A)R352 Warning: unaligning (T0547)L446 because of BadResidue code BAD_PEPTIDE at template residue (1em2A)R352 T0547 443 :NF 1em2A 349 :NV T0547 447 :FQSMP 1em2A 353 :IERRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=46423 # 1zx8A.443.109 read from T0547.t2k.many.frag # found chain 1zx8A in template set T0547 443 :NFSLFQSMP 1zx8A 98 :IGKIVEGLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=46424 # 1tu1A.443.114 read from T0547.t2k.many.frag # found chain 1tu1A in template set Warning: unaligning (T0547)N443 (1tu1A)I113 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1tu1A)T118 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :FSLF 1tu1A 114 :TTLT T0547 449 :SMP 1tu1A 119 :TPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=46426 # 1ve4A.443.150 read from T0547.t2k.many.frag # found chain 1ve4A in training set Warning: unaligning (T0547)N443 (1ve4A)V151 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1ve4A)D153 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :F 1ve4A 152 :V T0547 446 :LFQSMP 1ve4A 154 :VVQTGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=46428 1f06A expands to /projects/compbio/data/pdb/1f06.pdb.gz 1f06A:# 1f06A.443.195 read from T0547.t2k.many.frag # adding 1f06A to template set # found chain 1f06A in template set Warning: unaligning (T0547)N443 (1f06A)Q196 because E (beta_S) conformation "forbidden" or filtered. T0547 444 :FSLFQSMP 1f06A 197 :CFVVADAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=46429 # 1x99A.443.7 read from T0547.t2k.many.frag # found chain 1x99A in training set T0547 443 :NFSLFQSMP 1x99A 8 :TLRVYQTNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=46430 # 1kr4A.443.25 read from T0547.t2k.many.frag # found chain 1kr4A in training set Warning: unaligning (T0547)S449 (1kr4A)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NFSLFQ 1kr4A 10 :VYSTFP T0547 450 :MP 1kr4A 17 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=46432 # 1ou8A.443.27 read from T0547.t2k.many.frag # found chain 1ou8A in training set Warning: unaligning (T0547)S449 (1ou8A)T34 because G (3-10) conformation "forbidden" or filtered. T0547 443 :NFSLFQ 1ou8A 28 :YLVVDA T0547 450 :MP 1ou8A 35 :YL Number of specific fragments extracted= 2 number of extra gaps= 1 total=46434 # 1pmhX.443.85 read from T0547.t2k.many.frag # found chain 1pmhX in training set T0547 443 :NFSLFQSMP 1pmhX 86 :EFEMFIPYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46435 # 1qw9A.443.422 read from T0547.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0547)P451 (1qw9A)E431 because G (3-10) conformation "forbidden" or filtered. T0547 443 :NFSLFQSM 1qw9A 423 :IFAVNRDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=46436 # 1u0sA.443.35 read from T0547.t2k.many.frag # found chain 1u0sA in template set Warning: unaligning (T0547)N443 (1u0sA)V210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1u0sA)P215 because C (cis) conformation "forbidden" or filtered. T0547 444 :FSLF 1u0sA 211 :VRTI T0547 449 :SMP 1u0sA 216 :SVE Number of specific fragments extracted= 2 number of extra gaps= 2 total=46438 # 1ylnA.443.91 read from T0547.t2k.many.frag # found chain 1ylnA in template set Warning: unaligning (T0547)N443 (1ylnA)N92 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1ylnA)S97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1ylnA)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 444 :FSLF 1ylnA 93 :IRAI T0547 449 :SM 1ylnA 98 :PR Number of specific fragments extracted= 2 number of extra gaps= 3 total=46440 # 1l8bA.444.35 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 444 :FSLFQSMPD 1l8bA 63 :ISKFDTVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=46441 # 1stfI.444.66 read from T0547.t2k.many.frag # found chain 1stfI in template set Warning: unaligning (T0547)M450 (1stfI)L102A because P (beta_P) conformation "forbidden" or filtered. T0547 444 :FSLFQS 1stfI 97 :LRVFQS T0547 451 :PD 1stfI 103 :PH Number of specific fragments extracted= 2 number of extra gaps= 1 total=46443 # 2cfeA.444.127 read from T0547.t2k.many.frag # found chain 2cfeA in training set T0547 444 :FSLFQSMPD 2cfeA 128 :GEVIDGMNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=46444 # 1kzfA.444.85 read from T0547.t2k.many.frag # found chain 1kzfA in training set Warning: unaligning (T0547)P451 (1kzfA)D73 because G (3-10) conformation "forbidden" or filtered. T0547 444 :FSLFQSM 1kzfA 66 :SVRFTSL T0547 452 :D 1kzfA 74 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=46446 # 1sqwA.444.143 read from T0547.t2k.many.frag # found chain 1sqwA in template set T0547 444 :FSLFQSMPD 1sqwA 144 :GVAAKSTQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46447 # 1dy5A.444.44 read from T0547.t2k.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)Q448 (1dy5A)E49 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :FSLF 1dy5A 45 :TFVH T0547 449 :SMPD 1dy5A 50 :SLAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=46449 # 2bh1A.444.31 read from T0547.t2k.many.frag # found chain 2bh1A in template set T0547 444 :FSLFQSMPD 2bh1A 32 :SGQVAGWEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46450 # 1knwA.444.404 read from T0547.t2k.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q448 (1knwA)Q409 because P (beta_P) conformation "forbidden" or filtered. T0547 444 :FSLF 1knwA 405 :IRRR T0547 449 :SMPD 1knwA 410 :TIEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=46452 # 1vcc.444.43 read from T0547.t2k.many.frag # found chain 1vcc in training set Warning: unaligning (T0547)Q448 (1vcc)Q48 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1vcc)T49 because P (beta_P) conformation "forbidden" or filtered. T0547 444 :FSLF 1vcc 44 :VVYE T0547 450 :MPD 1vcc 50 :WEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=46454 # 1dkmA.444.350 read from T0547.t2k.many.frag # found chain 1dkmA in template set Warning: unaligning (T0547)Q448 (1dkmA)Q355 because E (beta_S) conformation "forbidden" or filtered. T0547 444 :FSLF 1dkmA 351 :SLVF T0547 449 :SMPD 1dkmA 356 :TLQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=46456 # 1em2A.444.134 read from T0547.t2k.many.frag # found chain 1em2A in template set Warning: unaligning (T0547)S445 because of BadResidue code BAD_PEPTIDE in next template residue (1em2A)R352 Warning: unaligning (T0547)L446 because of BadResidue code BAD_PEPTIDE at template residue (1em2A)R352 T0547 444 :F 1em2A 350 :V T0547 447 :FQSMPD 1em2A 353 :IERRRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=46458 # 1uv4A.444.198 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE in next template residue (1uv4A)C206 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE at template residue (1uv4A)C206 T0547 444 :FSLFQS 1uv4A 199 :MVSFDK T0547 452 :D 1uv4A 207 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=46460 # 1c8uA.444.180 read from T0547.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)S445 (1c8uA)R183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1c8uA)G186 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :F 1c8uA 182 :I T0547 446 :LF 1c8uA 184 :AN T0547 449 :SMPD 1c8uA 187 :SVPD Number of specific fragments extracted= 3 number of extra gaps= 2 total=46463 # 1pmhX.444.86 read from T0547.t2k.many.frag # found chain 1pmhX in training set T0547 444 :FSLFQSMPD 1pmhX 87 :FEMFIPYDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=46464 # 1zhxA.444.251 read from T0547.t2k.many.frag # found chain 1zhxA in training set T0547 444 :FSLFQSMPD 1zhxA 248 :ARIYKDSKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46465 # 1h2wA.444.248 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)S449 (1h2wA)G254 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (1h2wA)P257 because N (gamma') conformation "forbidden" or filtered. T0547 444 :FSLFQ 1h2wA 249 :LSIRE T0547 450 :MP 1h2wA 255 :CD Number of specific fragments extracted= 2 number of extra gaps= 2 total=46467 # 2ftrA.444.11 read from T0547.t2k.many.frag # found chain 2ftrA in training set Warning: unaligning (T0547)S449 (2ftrA)Q16 because P (beta_P) conformation "forbidden" or filtered. T0547 444 :FSLFQ 2ftrA 11 :IALYE T0547 450 :MPD 2ftrA 17 :PED Number of specific fragments extracted= 2 number of extra gaps= 1 total=46469 # 1zx8A.444.110 read from T0547.t2k.many.frag # found chain 1zx8A in template set T0547 444 :FSLFQSMPD 1zx8A 99 :GKIVEGLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=46470 # 1tu1A.444.115 read from T0547.t2k.many.frag # found chain 1tu1A in template set T0547 444 :FSLFQSMPD 1tu1A 114 :TTLTTTPAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46471 # 1lyqA.444.69 read from T0547.t2k.many.frag # found chain 1lyqA in training set T0547 444 :FSLFQSMPD 1lyqA 70 :IIPREPLPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46472 # 1f06A.444.196 read from T0547.t2k.many.frag # found chain 1f06A in template set Warning: unaligning (T0547)Q448 (1f06A)A201 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :FSLF 1f06A 197 :CFVV T0547 449 :SMPD 1f06A 202 :DAAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=46474 # 1ng0A.444.155 read from T0547.t2k.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)F444 (1ng0A)T156 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (1ng0A)G162 because T (delta_L) conformation "forbidden" or filtered. T0547 445 :SLFQS 1ng0A 157 :SNVWG T0547 451 :PD 1ng0A 163 :GD Number of specific fragments extracted= 2 number of extra gaps= 2 total=46476 # 2dpmA.444.236 read from T0547.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)F447 (2dpmA)N240 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :FSL 2dpmA 237 :MLS T0547 448 :QSMPD 2dpmA 241 :SSSAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=46478 # 2cxaA.444.172 read from T0547.t2k.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)L446 (2cxaA)M158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (2cxaA)N164 because L (left) conformation "forbidden" or filtered. T0547 444 :FS 2cxaA 156 :ES T0547 447 :FQSMP 2cxaA 159 :FSRME Number of specific fragments extracted= 2 number of extra gaps= 2 total=46480 # 1x99A.444.8 read from T0547.t2k.many.frag # found chain 1x99A in training set T0547 444 :FSLFQSMPD 1x99A 9 :LRVYQTNRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46481 # 1ve4A.444.151 read from T0547.t2k.many.frag # found chain 1ve4A in training set Warning: unaligning (T0547)S445 (1ve4A)D153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (1ve4A)G158 because T (delta_L) conformation "forbidden" or filtered. T0547 444 :F 1ve4A 152 :V T0547 446 :LFQS 1ve4A 154 :VVQT T0547 451 :PD 1ve4A 159 :AT Number of specific fragments extracted= 3 number of extra gaps= 2 total=46484 1uw4A expands to /projects/compbio/data/pdb/1uw4.pdb.gz 1uw4A:# 1uw4A.444.48 read from T0547.t2k.many.frag # adding 1uw4A to template set # found chain 1uw4A in template set Warning: unaligning (T0547)L446 (1uw4A)N100 because D (zeta) conformation "forbidden" or filtered. T0547 444 :FS 1uw4A 98 :YI T0547 447 :FQSMPD 1uw4A 101 :FKNQED Number of specific fragments extracted= 2 number of extra gaps= 1 total=46486 # 1kr4A.444.26 read from T0547.t2k.many.frag # found chain 1kr4A in training set Warning: unaligning (T0547)S449 (1kr4A)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :FSLFQ 1kr4A 11 :YSTFP T0547 450 :MPD 1kr4A 17 :EEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=46488 1tyjA expands to /projects/compbio/data/pdb/1tyj.pdb.gz 1tyjA:Skipped atom 11, because occupancy 0.500 <= existing 0.500 in 1tyjA Skipped atom 287, because occupancy 0.500 <= existing 0.500 in 1tyjA Skipped atom 289, because occupancy 0.500 <= existing 0.500 in 1tyjA Skipped atom 291, because occupancy 0.500 <= existing 0.500 in 1tyjA Skipped atom 293, because occupancy 0.500 <= existing 0.500 in 1tyjA Skipped atom 599, because occupancy 0.500 <= existing 0.500 in 1tyjA Skipped atom 601, because occupancy 0.500 <= existing 0.500 in 1tyjA Skipped atom 603, because occupancy 0.500 <= existing 0.500 in 1tyjA Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 1tyjA Skipped atom 844, because occupancy 0.500 <= existing 0.500 in 1tyjA Skipped atom 846, because occupancy 0.500 <= existing 0.500 in 1tyjA Skipped atom 1013, because occupancy 0.500 <= existing 0.500 in 1tyjA Skipped atom 1015, because occupancy 0.500 <= existing 0.500 in 1tyjA # 1tyjA.444.88 read from T0547.t2k.many.frag # adding 1tyjA to template set # found chain 1tyjA in template set T0547 444 :FSLFQSMPD 1tyjA 90 :GRLYMNLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46489 1g31A expands to /projects/compbio/data/pdb/1g31.pdb.gz 1g31A:# 1g31A.444.48 read from T0547.t2k.many.frag # adding 1g31A to template set # found chain 1g31A in template set T0547 444 :FSLFQSMPD 1g31A 49 :CVVHSVGPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46490 # 1l8bA.445.36 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 445 :SLFQSMPDF 1l8bA 64 :SKFDTVEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46491 # 1stfI.445.67 read from T0547.t2k.many.frag # found chain 1stfI in template set T0547 445 :SLFQSMPDF 1stfI 98 :RVFQSLPHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=46492 # 1dy5A.445.45 read from T0547.t2k.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)Q448 (1dy5A)E49 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLF 1dy5A 46 :FVH T0547 449 :SMPDF 1dy5A 50 :SLADV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46494 # 2cfeA.445.128 read from T0547.t2k.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)S449 (2cfeA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 445 :SLFQ 2cfeA 129 :EVID T0547 450 :MPDF 2cfeA 134 :MNVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46496 # 2bh1A.445.32 read from T0547.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)S445 (2bh1A)G33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (2bh1A)G37 because S (epsilon) conformation "forbidden" or filtered. T0547 446 :LFQ 2bh1A 34 :QVA T0547 450 :MPDF 2bh1A 38 :WEAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=46498 # 1zx8A.445.111 read from T0547.t2k.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)F447 (1zx8A)V102 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1zx8A)G104 because T (delta_L) conformation "forbidden" or filtered. T0547 445 :SL 1zx8A 100 :KI T0547 448 :Q 1zx8A 103 :E T0547 450 :MPDF 1zx8A 105 :LEDL Number of specific fragments extracted= 3 number of extra gaps= 2 total=46501 # 1kzfA.445.86 read from T0547.t2k.many.frag # found chain 1kzfA in training set Warning: unaligning (T0547)P451 (1kzfA)D73 because G (3-10) conformation "forbidden" or filtered. T0547 445 :SLFQSM 1kzfA 67 :VRFTSL T0547 452 :DF 1kzfA 74 :RP Number of specific fragments extracted= 2 number of extra gaps= 1 total=46503 # 1sqwA.445.144 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)Q448 (1sqwA)K148 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLF 1sqwA 145 :VAA T0547 449 :SMPDF 1sqwA 149 :STQDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=46505 # 1pmhX.445.87 read from T0547.t2k.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)Q448 (1pmhX)I91 because E (beta_S) conformation "forbidden" or filtered. T0547 445 :SLF 1pmhX 88 :EMF T0547 449 :SMPDF 1pmhX 92 :PYDEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=46507 # 1knwA.445.405 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 445 :SLFQSMPDF 1knwA 406 :RRRQTIEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46508 # 2cxaA.445.173 read from T0547.t2k.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)L446 (2cxaA)M158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (2cxaA)N164 because L (left) conformation "forbidden" or filtered. T0547 445 :S 2cxaA 157 :S T0547 447 :FQSMP 2cxaA 159 :FSRME T0547 453 :F 2cxaA 165 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=46511 # 2ftrA.445.12 read from T0547.t2k.many.frag # found chain 2ftrA in training set Warning: unaligning (T0547)D452 (2ftrA)D19 because D (zeta) conformation "forbidden" or filtered. T0547 445 :SLFQSMP 2ftrA 12 :ALYEQPE T0547 453 :F 2ftrA 20 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=46513 # 1tu1A.445.116 read from T0547.t2k.many.frag # found chain 1tu1A in template set Warning: unaligning (T0547)Q448 (1tu1A)T118 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLF 1tu1A 115 :TLT T0547 449 :SMPDF 1tu1A 119 :TPADL Number of specific fragments extracted= 2 number of extra gaps= 1 total=46515 # 1xv5A.445.232 read from T0547.t2k.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)L446 (1xv5A)G1233 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (1xv5A)S1237 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :S 1xv5A 1232 :E T0547 447 :FQS 1xv5A 1234 :LER T0547 451 :PDF 1xv5A 1238 :PAF Number of specific fragments extracted= 3 number of extra gaps= 2 total=46518 # 1f06A.445.197 read from T0547.t2k.many.frag # found chain 1f06A in template set Warning: unaligning (T0547)Q448 (1f06A)A201 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLF 1f06A 198 :FVV T0547 449 :SMPDF 1f06A 202 :DAADH Number of specific fragments extracted= 2 number of extra gaps= 1 total=46520 # 1x99A.445.9 read from T0547.t2k.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)Q448 (1x99A)Q13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F453 (1x99A)R18 because G (3-10) conformation "forbidden" or filtered. T0547 445 :SLF 1x99A 10 :RVY T0547 449 :SMPD 1x99A 14 :TNRD Number of specific fragments extracted= 2 number of extra gaps= 2 total=46522 # 1vcc.445.44 read from T0547.t2k.many.frag # found chain 1vcc in training set T0547 445 :SLFQSMPDF 1vcc 45 :VYEQTWEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46523 # 1zhxA.445.252 read from T0547.t2k.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)S449 (1zhxA)D253 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLFQ 1zhxA 249 :RIYK T0547 450 :MPDF 1zhxA 254 :SKDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=46525 # 1em2A.445.135 read from T0547.t2k.many.frag # found chain 1em2A in template set Warning: unaligning (T0547)S445 because of BadResidue code BAD_PEPTIDE in next template residue (1em2A)R352 Warning: unaligning (T0547)L446 because of BadResidue code BAD_PEPTIDE at template residue (1em2A)R352 T0547 447 :FQSMPDF 1em2A 353 :IERRRDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=46526 # 1c8uA.445.181 read from T0547.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)S445 (1c8uA)R183 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LFQSMPDF 1c8uA 184 :ANGSVPDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=46527 # 1dkmA.445.351 read from T0547.t2k.many.frag # found chain 1dkmA in template set T0547 445 :SLFQSMPDF 1dkmA 352 :LVFQTLQQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=46528 # 1hqz1.445.46 read from T0547.t2k.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)S445 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LFQSMPDF 1hqz1 48 :TGSSFHDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=46529 # 1tyjA.445.89 read from T0547.t2k.many.frag # found chain 1tyjA in template set T0547 445 :SLFQSMPDF 1tyjA 91 :RLYMNLSAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46530 # 1ve4A.445.152 read from T0547.t2k.many.frag # found chain 1ve4A in training set T0547 445 :SLFQSMPDF 1ve4A 153 :DVVQTGATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46531 2bbhA expands to /projects/compbio/data/pdb/2bbh.pdb.gz 2bbhA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 229, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 231, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 233, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 235, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 237, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 239, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 241, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 243, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 245, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 247, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 249, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 547, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 549, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 551, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 553, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 555, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 557, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 561, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 563, because occupancy 0.500 <= existing 0.500 in 2bbhA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1396, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1398, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1400, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1402, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1404, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1406, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1408, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1410, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1774, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1776, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1778, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1780, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1782, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1784, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1786, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1788, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1790, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1792, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1794, because occupancy 0.500 <= existing 0.500 in 2bbhA # 2bbhA.445.112 read from T0547.t2k.many.frag # adding 2bbhA to template set # found chain 2bbhA in template set Warning: unaligning (T0547)P451 (2bbhA)D116 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bbhA)H120 T0547 445 :SLFQSM 2bbhA 110 :LKMFTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=46532 # 2c5qA.445.118 read from T0547.t2k.many.frag # found chain 2c5qA in training set T0547 445 :SLFQSMPDF 2c5qA 119 :GRIRDVDEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=46533 # 1wrvA.445.236 read from T0547.t2k.many.frag # found chain 1wrvA in training set Warning: unaligning (T0547)L446 (1wrvA)V238 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :S 1wrvA 237 :V T0547 447 :FQSMPDF 1wrvA 239 :RATRDQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=46535 # 1kr4A.445.27 read from T0547.t2k.many.frag # found chain 1kr4A in training set Warning: unaligning (T0547)S445 (1kr4A)S12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1kr4A)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LFQ 1kr4A 13 :TFP T0547 450 :MPDF 1kr4A 17 :EEKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=46537 1xv2A expands to /projects/compbio/data/pdb/1xv2.pdb.gz 1xv2A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xv2A.445.158 read from T0547.t2k.many.frag # adding 1xv2A to template set # found chain 1xv2A in template set T0547 445 :SLFQSMPDF 1xv2A 156 :VGFFTPELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46538 # 1qd1A.445.186 read from T0547.t2k.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)Q448 (1qd1A)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLF 1qd1A 188 :NLL T0547 449 :SMPDF 1qd1A 192 :TREQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=46540 # 1l8bA.446.37 read from T0547.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)F447 (1l8bA)F66 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :L 1l8bA 65 :K T0547 448 :QSMPDFW 1l8bA 67 :DTVEDFW Number of specific fragments extracted= 2 number of extra gaps= 1 total=46542 # 1dy5A.446.46 read from T0547.t2k.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)Q448 (1dy5A)E49 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LF 1dy5A 47 :VH T0547 449 :SMPDFW 1dy5A 50 :SLADVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=46544 # 2bh1A.446.33 read from T0547.t2k.many.frag # found chain 2bh1A in template set T0547 446 :LFQSMPDFW 2bh1A 34 :QVAGWEALH Number of specific fragments extracted= 1 number of extra gaps= 0 total=46545 # 1zx8A.446.112 read from T0547.t2k.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)S449 (1zx8A)G104 because T (delta_L) conformation "forbidden" or filtered. T0547 446 :LFQ 1zx8A 101 :IVE T0547 450 :MPDFW 1zx8A 105 :LEDLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=46547 # 2cfeA.446.129 read from T0547.t2k.many.frag # found chain 2cfeA in training set T0547 446 :LFQSMPDFW 2cfeA 130 :VIDGMNVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46548 # 1stfI.446.68 read from T0547.t2k.many.frag # found chain 1stfI in template set Warning: unaligning (T0547)W454 (1stfI)N105A because L (left) conformation "forbidden" or filtered. T0547 446 :LFQSMPDF 1stfI 99 :VFQSLPHE Number of specific fragments extracted= 1 number of extra gaps= 1 total=46549 # 1xv5A.446.233 read from T0547.t2k.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)M450 (1xv5A)S1237 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LFQS 1xv5A 1233 :GLER T0547 451 :PDFW 1xv5A 1238 :PAFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=46551 # 1sqwA.446.145 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)Q448 (1sqwA)K148 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LF 1sqwA 146 :AA T0547 449 :SMPDFW 1sqwA 149 :STQDCR Number of specific fragments extracted= 2 number of extra gaps= 1 total=46553 # 2cxaA.446.174 read from T0547.t2k.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)L446 (2cxaA)M158 because Y (epsilon') conformation "forbidden" or filtered. T0547 447 :FQSMPDFW 2cxaA 159 :FSRMENAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=46554 # 1pmhX.446.88 read from T0547.t2k.many.frag # found chain 1pmhX in training set T0547 446 :LFQSMPDFW 1pmhX 89 :MFIPYDEFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=46555 # 1kzfA.446.87 read from T0547.t2k.many.frag # found chain 1kzfA in training set Warning: unaligning (T0547)P451 (1kzfA)D73 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W454 (1kzfA)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LFQSM 1kzfA 68 :RFTSL T0547 452 :DF 1kzfA 74 :RP Number of specific fragments extracted= 2 number of extra gaps= 2 total=46557 # 1tu1A.446.117 read from T0547.t2k.many.frag # found chain 1tu1A in template set Warning: unaligning (T0547)Q448 (1tu1A)T118 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LF 1tu1A 116 :LT T0547 449 :SMPDFW 1tu1A 119 :TPADLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=46559 # 1hqz1.446.47 read from T0547.t2k.many.frag # found chain 1hqz1 in template set T0547 446 :LFQSMPDFW 1hqz1 48 :TGSSFHDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46560 # 1knwA.446.406 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 446 :LFQSMPDFW 1knwA 407 :RRQTIEELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46561 # 2ftrA.446.13 read from T0547.t2k.many.frag # found chain 2ftrA in training set Warning: unaligning (T0547)S449 (2ftrA)Q16 because P (beta_P) conformation "forbidden" or filtered. T0547 446 :LFQ 2ftrA 13 :LYE T0547 450 :MPDFW 2ftrA 17 :PEDKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=46563 1ko6A expands to /projects/compbio/data/pdb/1ko6.pdb.gz 1ko6A:# 1ko6A.446.49 read from T0547.t2k.many.frag # adding 1ko6A to template set # found chain 1ko6A in template set Warning: unaligning (T0547)Q448 (1ko6A)P728 because C (cis) conformation "forbidden" or filtered. T0547 446 :LF 1ko6A 726 :TI T0547 449 :SMPDFW 1ko6A 729 :SMDDLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=46565 1xzpB expands to /projects/compbio/data/pdb/1xzp.pdb.gz 1xzpB:# 1xzpB.446.50 read from T0547.t2k.many.frag # adding 1xzpB to template set # found chain 1xzpB in template set T0547 446 :LFQSMPDFW 1xzpB 19 :LRLSGPDSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=46566 # 1xdnA.446.199 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 446 :LFQSMPDFW 1xdnA 247 :VRGTLDECL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46567 # 1wrvA.446.237 read from T0547.t2k.many.frag # found chain 1wrvA in training set T0547 446 :LFQSMPDFW 1wrvA 238 :VRATRDQLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46568 # 1x99A.446.10 read from T0547.t2k.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)S449 (1x99A)T14 because G (3-10) conformation "forbidden" or filtered. T0547 446 :LFQ 1x99A 11 :VYQ T0547 450 :MPDFW 1x99A 15 :NRDRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=46570 # 2bbhA.446.113 read from T0547.t2k.many.frag # found chain 2bbhA in template set Warning: unaligning (T0547)P451 (2bbhA)D116 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2bbhA)H120 T0547 446 :LFQSM 2bbhA 111 :KMFTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=46571 # 1f06A.446.198 read from T0547.t2k.many.frag # found chain 1f06A in template set Warning: unaligning (T0547)Q448 (1f06A)A201 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LF 1f06A 199 :VV T0547 449 :SMPDFW 1f06A 202 :DAADHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=46573 # 1c8uA.446.182 read from T0547.t2k.many.frag # found chain 1c8uA in template set T0547 446 :LFQSMPDFW 1c8uA 184 :ANGSVPDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46574 # 1zceA.446.95 read from T0547.t2k.many.frag # found chain 1zceA in training set T0547 446 :LFQSMPDFW 1zceA 96 :QPVSLKDVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46575 # 1vcc.446.45 read from T0547.t2k.many.frag # found chain 1vcc in training set T0547 446 :LFQSMPDFW 1vcc 46 :YEQTWEEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46576 # 1jh6A.446.89 read from T0547.t2k.many.frag # found chain 1jh6A in training set Warning: unaligning (T0547)Q448 (1jh6A)Q92 because P (beta_P) conformation "forbidden" or filtered. T0547 446 :LF 1jh6A 90 :LL T0547 449 :SMPDFW 1jh6A 93 :TTPEVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=46578 # 1i60A.446.244 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 446 :LFQSMPDFW 1i60A 245 :VELFRPEYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46579 # 1tr9A.446.272 read from T0547.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)Q448 (1tr9A)N274 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1tr9A)K275 because D (zeta) conformation "forbidden" or filtered. T0547 446 :LF 1tr9A 272 :IC T0547 450 :MPDFW 1tr9A 276 :REAAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46581 # 1u8bA.446.47 read from T0547.t2k.many.frag # found chain 1u8bA in template set T0547 446 :LFQSMPDFW 1u8bA 54 :FYANASEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46582 # 2dpmA.446.238 read from T0547.t2k.many.frag # found chain 2dpmA in training set T0547 446 :LFQSMPDFW 2dpmA 239 :SNSSSALVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=46583 # 1l8bA.447.38 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 447 :FQSMPDFWG 1l8bA 66 :FDTVEDFWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46584 # 1dy5A.447.47 read from T0547.t2k.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)Q448 (1dy5A)E49 because Y (epsilon') conformation "forbidden" or filtered. T0547 447 :F 1dy5A 48 :H T0547 449 :SMPDFWG 1dy5A 50 :SLADVQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=46586 # 1zx8A.447.113 read from T0547.t2k.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)Q448 (1zx8A)E103 because E (beta_S) conformation "forbidden" or filtered. T0547 447 :F 1zx8A 102 :V T0547 449 :SMPDFWG 1zx8A 104 :GLEDLKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=46588 # 2bh1A.447.34 read from T0547.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)S449 (2bh1A)G37 because S (epsilon) conformation "forbidden" or filtered. T0547 447 :FQ 2bh1A 35 :VA T0547 450 :MPDFWG 2bh1A 38 :WEALHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=46590 # 1xv5A.447.234 read from T0547.t2k.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)M450 (1xv5A)S1237 because Y (epsilon') conformation "forbidden" or filtered. T0547 447 :FQS 1xv5A 1234 :LER T0547 451 :PDFWG 1xv5A 1238 :PAFIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=46592 # 2cfeA.447.130 read from T0547.t2k.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)S449 (2cfeA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 447 :FQ 2cfeA 131 :ID T0547 450 :MPDFWG 2cfeA 134 :MNVVKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=46594 # 1sqwA.447.146 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)Q448 (1sqwA)K148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1sqwA)K155 because G (3-10) conformation "forbidden" or filtered. T0547 447 :F 1sqwA 147 :A T0547 449 :SMPDFW 1sqwA 149 :STQDCR Number of specific fragments extracted= 2 number of extra gaps= 2 total=46596 # 1hqz1.447.48 read from T0547.t2k.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)F447 (1hqz1)G49 because Y (epsilon') conformation "forbidden" or filtered. T0547 448 :QSMPDFWG 1hqz1 50 :SSFHDFLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=46597 # 2ftrA.447.14 read from T0547.t2k.many.frag # found chain 2ftrA in training set T0547 447 :FQSMPDFWG 2ftrA 14 :YEQPEDKQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46598 # 1ko6A.447.50 read from T0547.t2k.many.frag # found chain 1ko6A in template set Warning: unaligning (T0547)Q448 (1ko6A)P728 because C (cis) conformation "forbidden" or filtered. T0547 447 :F 1ko6A 727 :I T0547 449 :SMPDFWG 1ko6A 729 :SMDDLAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=46600 # 1xdnA.447.200 read from T0547.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)Q448 (1xdnA)G249 because Y (epsilon') conformation "forbidden" or filtered. T0547 447 :F 1xdnA 248 :R T0547 449 :SMPDFWG 1xdnA 250 :TLDECLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=46602 # 2cxaA.447.175 read from T0547.t2k.many.frag # found chain 2cxaA in training set T0547 447 :FQSMPDFWG 2cxaA 159 :FSRMENASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46603 # 1tu1A.447.118 read from T0547.t2k.many.frag # found chain 1tu1A in template set Warning: unaligning (T0547)Q448 (1tu1A)T118 because Y (epsilon') conformation "forbidden" or filtered. T0547 447 :F 1tu1A 117 :T T0547 449 :SMPDFWG 1tu1A 119 :TPADLPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=46605 # 1pmhX.447.89 read from T0547.t2k.many.frag # found chain 1pmhX in training set T0547 447 :FQSMPDFWG 1pmhX 90 :FIPYDEFSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46606 # 1knwA.447.407 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 447 :FQSMPDFWG 1knwA 408 :RQTIEELLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46607 # 1xzpB.447.51 read from T0547.t2k.many.frag # found chain 1xzpB in template set T0547 447 :FQSMPDFWG 1xzpB 20 :RLSGPDSWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46608 # 1u4bA.447.473 read from T0547.t2k.many.frag # found chain 1u4bA in template set T0547 447 :FQSMPDFWG 1u4bA 770 :RRYLPDITS Number of specific fragments extracted= 1 number of extra gaps= 0 total=46609 # 1tr9A.447.273 read from T0547.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)Q448 (1tr9A)N274 because T (delta_L) conformation "forbidden" or filtered. T0547 447 :F 1tr9A 273 :C T0547 449 :SMPDFWG 1tr9A 275 :KREAAVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=46611 # 1jh6A.447.90 read from T0547.t2k.many.frag # found chain 1jh6A in training set Warning: unaligning (T0547)Q448 (1jh6A)Q92 because P (beta_P) conformation "forbidden" or filtered. T0547 447 :F 1jh6A 91 :L T0547 449 :SMPDFWG 1jh6A 93 :TTPEVME Number of specific fragments extracted= 2 number of extra gaps= 1 total=46613 # 1i60A.447.245 read from T0547.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)Q448 (1i60A)L247 because E (beta_S) conformation "forbidden" or filtered. T0547 447 :F 1i60A 246 :E T0547 449 :SMPDFWG 1i60A 248 :FRPEYYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=46615 # 1c8uA.447.183 read from T0547.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)Q448 (1c8uA)G186 because Y (epsilon') conformation "forbidden" or filtered. T0547 447 :F 1c8uA 185 :N T0547 449 :SMPDFWG 1c8uA 187 :SVPDDLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=46617 # 1f06A.447.199 read from T0547.t2k.many.frag # found chain 1f06A in template set Warning: unaligning (T0547)Q448 (1f06A)A201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1f06A)D202 because P (beta_P) conformation "forbidden" or filtered. T0547 447 :F 1f06A 200 :V T0547 450 :MPDFWG 1f06A 203 :AADHER Number of specific fragments extracted= 2 number of extra gaps= 1 total=46619 # 1uw4A.447.51 read from T0547.t2k.many.frag # found chain 1uw4A in template set T0547 447 :FQSMPDFWG 1uw4A 101 :FKNQEDIIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46620 # 1wrvA.447.238 read from T0547.t2k.many.frag # found chain 1wrvA in training set Warning: unaligning (T0547)Q448 (1wrvA)A240 because E (beta_S) conformation "forbidden" or filtered. T0547 447 :F 1wrvA 239 :R T0547 449 :SMPDFWG 1wrvA 241 :TRDQLYM Number of specific fragments extracted= 2 number of extra gaps= 1 total=46622 # 1u8bA.447.48 read from T0547.t2k.many.frag # found chain 1u8bA in template set T0547 447 :FQSMPDFWG 1u8bA 55 :YANASEALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46623 # 1eziA.447.179 read from T0547.t2k.many.frag # found chain 1eziA in template set T0547 447 :FQSMPDFWG 1eziA 180 :INDTASLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46624 # 1zceA.447.96 read from T0547.t2k.many.frag # found chain 1zceA in training set T0547 447 :FQSMPDFWG 1zceA 97 :PVSLKDVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46625 # 1stfI.447.69 read from T0547.t2k.many.frag # found chain 1stfI in template set Warning: unaligning (T0547)W454 (1stfI)N105A because L (left) conformation "forbidden" or filtered. T0547 447 :FQSMPDF 1stfI 100 :FQSLPHE T0547 455 :G 1stfI 106 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=46627 # 1t3tA.447.147 read from T0547.t2k.many.frag # found chain 1t3tA in template set T0547 447 :FQSMPDFWG 1t3tA 140 :FSSLTDAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46628 # 2bduA.447.282 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 447 :FQSMPDFWG 2bduA 283 :EESLEVVNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=46629 # 1l8bA.448.39 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 448 :QSMPDFWGL 1l8bA 67 :DTVEDFWAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46630 # 1dy5A.448.48 read from T0547.t2k.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)Q448 (1dy5A)E49 because Y (epsilon') conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1dy5A 50 :SLADVQAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=46631 # 1zx8A.448.114 read from T0547.t2k.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)Q448 (1zx8A)E103 because E (beta_S) conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1zx8A 104 :GLEDLKKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=46632 # 2bh1A.448.35 read from T0547.t2k.many.frag # found chain 2bh1A in template set T0547 448 :QSMPDFWGL 2bh1A 36 :AGWEALHEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=46633 # 1xv5A.448.235 read from T0547.t2k.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)M450 (1xv5A)S1237 because Y (epsilon') conformation "forbidden" or filtered. T0547 448 :QS 1xv5A 1235 :ER T0547 451 :PDFWGL 1xv5A 1238 :PAFIAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=46635 # 2cfeA.448.131 read from T0547.t2k.many.frag # found chain 2cfeA in training set T0547 448 :QSMPDFWGL 2cfeA 132 :DGMNVVKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=46636 # 2ftrA.448.15 read from T0547.t2k.many.frag # found chain 2ftrA in training set T0547 448 :QSMPDFWGL 2ftrA 15 :EQPEDKQAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46637 # 1tu1A.448.119 read from T0547.t2k.many.frag # found chain 1tu1A in template set Warning: unaligning (T0547)Q448 (1tu1A)T118 because Y (epsilon') conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1tu1A 119 :TPADLPHH Number of specific fragments extracted= 1 number of extra gaps= 1 total=46638 # 1xdnA.448.201 read from T0547.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)G455 (1xdnA)A256 because G (3-10) conformation "forbidden" or filtered. T0547 448 :QSMPDFW 1xdnA 249 :GTLDECL T0547 456 :L 1xdnA 257 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=46640 # 1sqwA.448.147 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)G455 (1sqwA)K155 because G (3-10) conformation "forbidden" or filtered. T0547 448 :QSMPDFW 1sqwA 148 :KSTQDCR T0547 456 :L 1sqwA 156 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=46642 # 1xzpB.448.52 read from T0547.t2k.many.frag # found chain 1xzpB in template set Warning: unaligning (T0547)M450 (1xzpB)G23 because Y (epsilon') conformation "forbidden" or filtered. T0547 448 :QS 1xzpB 21 :LS T0547 451 :PDFWGL 1xzpB 24 :PDSWKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=46644 # 1u4bA.448.474 read from T0547.t2k.many.frag # found chain 1u4bA in template set T0547 448 :QSMPDFWGL 1u4bA 771 :RYLPDITSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=46645 # 1ko6A.448.51 read from T0547.t2k.many.frag # found chain 1ko6A in template set Warning: unaligning (T0547)Q448 (1ko6A)P728 because C (cis) conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1ko6A 729 :SMDDLAKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=46646 # 1jh6A.448.91 read from T0547.t2k.many.frag # found chain 1jh6A in training set T0547 448 :QSMPDFWGL 1jh6A 92 :QTTPEVMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46647 # 1i60A.448.246 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 448 :QSMPDFWGL 1i60A 247 :LFRPEYYKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46648 # 1hqz1.448.49 read from T0547.t2k.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)G455 (1hqz1)Q57 because G (3-10) conformation "forbidden" or filtered. T0547 448 :QSMPDFW 1hqz1 50 :SSFHDFL T0547 456 :L 1hqz1 58 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=46650 # 1tr9A.448.274 read from T0547.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)Q448 (1tr9A)N274 because T (delta_L) conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1tr9A 275 :KREAAVEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=46651 # 2cxaA.448.176 read from T0547.t2k.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)D452 (2cxaA)N164 because L (left) conformation "forbidden" or filtered. T0547 448 :QSMP 2cxaA 160 :SRME T0547 453 :FWGL 2cxaA 165 :ASKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=46653 # 1c8uA.448.184 read from T0547.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)Q448 (1c8uA)G186 because Y (epsilon') conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1c8uA 187 :SVPDDLRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=46654 # 1e0tA.448.378 read from T0547.t2k.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)M450 (1e0tA)G381 because T (delta_L) conformation "forbidden" or filtered. T0547 448 :QS 1e0tA 379 :QG T0547 451 :PDFWGL 1e0tA 382 :KSARAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46656 # 1gxjA.448.136 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 448 :QSMPDFWGL 1gxjA 621 :ETLDDAIRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=46657 # 1pmhX.448.90 read from T0547.t2k.many.frag # found chain 1pmhX in training set T0547 448 :QSMPDFWGL 1pmhX 91 :IPYDEFSKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=46658 # 1t3tA.448.148 read from T0547.t2k.many.frag # found chain 1t3tA in template set T0547 448 :QSMPDFWGL 1t3tA 141 :SSLTDAEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46659 2c1lA expands to /projects/compbio/data/pdb/2c1l.pdb.gz 2c1lA:Skipped atom 9, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 10, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 11, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 12, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 13, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 14, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 15, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 16, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 247, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 248, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 249, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 250, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 251, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 252, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 253, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 254, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 331, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 332, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 333, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 334, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 335, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 336, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 337, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 338, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 494, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 495, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 496, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 497, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 498, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 499, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 500, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 501, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 502, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 671, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 672, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 673, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 674, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 675, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 676, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 677, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 678, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 679, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 680, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 681, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 682, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 683, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 684, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 685, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 686, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 687, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 688, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 689, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 690, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 691, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 692, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 981, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 982, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 983, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 984, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 985, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 986, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1080, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1081, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1082, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1083, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1084, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1085, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1147, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1148, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1149, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1150, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1151, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1152, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1153, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1154, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1187, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1188, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1189, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1190, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1191, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1192, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1193, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1194, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1275, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1276, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1277, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1278, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1279, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1280, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1281, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1282, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1363, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1364, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1365, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1366, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1367, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1368, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1369, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1370, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1429, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1430, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1431, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1432, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1433, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1434, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1435, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1436, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1483, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1484, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1485, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1486, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1487, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1488, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1522, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1523, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1524, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1525, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1526, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1527, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1528, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1529, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1927, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1928, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1929, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1930, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1931, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1932, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1933, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1934, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1935, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2555, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2556, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2557, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2558, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2559, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2560, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2561, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2562, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2569, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2570, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2571, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2572, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2573, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2574, because occupancy 0.330 <= existing 0.330 in 2c1lA # 2c1lA.448.318 read from T0547.t2k.many.frag # adding 2c1lA to template set # found chain 2c1lA in template set Warning: unaligning (T0547)Q448 (2c1lA)Q319 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (2c1lA)G320 because L (left) conformation "forbidden" or filtered. T0547 450 :MPDFWGL 2c1lA 321 :TPEHSQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=46660 # 1guiA.448.52 read from T0547.t2k.many.frag # found chain 1guiA in template set Warning: unaligning (T0547)M450 (1guiA)G57 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1guiA)T58 because G (3-10) conformation "forbidden" or filtered. T0547 448 :QS 1guiA 55 :DP T0547 452 :DFWGL 1guiA 59 :DTWHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=46662 # 1f06A.448.200 read from T0547.t2k.many.frag # found chain 1f06A in template set Warning: unaligning (T0547)Q448 (1f06A)A201 because Y (epsilon') conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1f06A 202 :DAADHERI Number of specific fragments extracted= 1 number of extra gaps= 1 total=46663 # 1no7A.448.492 read from T0547.t2k.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P451 (1no7A)D946 because G (3-10) conformation "forbidden" or filtered. T0547 448 :QSM 1no7A 943 :QHL T0547 452 :DFWGL 1no7A 947 :HTIQN Number of specific fragments extracted= 2 number of extra gaps= 1 total=46665 # 1uw4A.448.52 read from T0547.t2k.many.frag # found chain 1uw4A in template set T0547 448 :QSMPDFWGL 1uw4A 102 :KNQEDIILF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46666 # 1knwA.448.408 read from T0547.t2k.many.frag # found chain 1knwA in template set T0547 448 :QSMPDFWGL 1knwA 409 :QTIEELLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46667 # 1eziA.448.180 read from T0547.t2k.many.frag # found chain 1eziA in template set T0547 448 :QSMPDFWGL 1eziA 181 :NDTASLIAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=46668 # 1l8bA.449.40 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 449 :SMPDFWGLE 1l8bA 68 :TVEDFWALY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46669 # 1dy5A.449.49 read from T0547.t2k.many.frag # found chain 1dy5A in training set T0547 449 :SMPDFWGLE 1dy5A 50 :SLADVQAVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=46670 # 1zx8A.449.115 read from T0547.t2k.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)S449 (1zx8A)G104 because T (delta_L) conformation "forbidden" or filtered. T0547 450 :MPDFWGLE 1zx8A 105 :LEDLKKIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=46671 # 2bh1A.449.36 read from T0547.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)S449 (2bh1A)G37 because S (epsilon) conformation "forbidden" or filtered. T0547 450 :MPDFWGLE 2bh1A 38 :WEALHEIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=46672 # 1xv5A.449.236 read from T0547.t2k.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)M450 (1xv5A)S1237 because Y (epsilon') conformation "forbidden" or filtered. T0547 449 :S 1xv5A 1236 :R T0547 451 :PDFWGLE 1xv5A 1238 :PAFIAIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=46674 # 1xzpB.449.53 read from T0547.t2k.many.frag # found chain 1xzpB in template set Warning: unaligning (T0547)M450 (1xzpB)G23 because Y (epsilon') conformation "forbidden" or filtered. T0547 449 :S 1xzpB 22 :S T0547 451 :PDFWGLE 1xzpB 24 :PDSWKIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46676 # 1tu1A.449.120 read from T0547.t2k.many.frag # found chain 1tu1A in template set T0547 449 :SMPDFWGLE 1tu1A 119 :TPADLPHHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=46677 # 2cfeA.449.132 read from T0547.t2k.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)S449 (2cfeA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 450 :MPDFWGLE 2cfeA 134 :MNVVKAIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=46678 # 1xdnA.449.202 read from T0547.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)G455 (1xdnA)A256 because G (3-10) conformation "forbidden" or filtered. T0547 449 :SMPDFW 1xdnA 250 :TLDECL T0547 456 :LE 1xdnA 257 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=46680 # 1t3tA.449.149 read from T0547.t2k.many.frag # found chain 1t3tA in template set T0547 449 :SMPDFWGLE 1t3tA 142 :SLTDAEKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46681 # 1guiA.449.53 read from T0547.t2k.many.frag # found chain 1guiA in template set Warning: unaligning (T0547)M450 (1guiA)G57 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1guiA)T58 because G (3-10) conformation "forbidden" or filtered. T0547 449 :S 1guiA 56 :P T0547 452 :DFWGLE 1guiA 59 :DTWHIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=46683 # 2ftrA.449.16 read from T0547.t2k.many.frag # found chain 2ftrA in training set Warning: unaligning (T0547)D452 (2ftrA)D19 because D (zeta) conformation "forbidden" or filtered. T0547 449 :SMP 2ftrA 16 :QPE T0547 453 :FWGLE 2ftrA 20 :KQAFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=46685 # 1u4bA.449.475 read from T0547.t2k.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)G455 (1u4bA)S778 because P (beta_P) conformation "forbidden" or filtered. T0547 449 :SMPDFW 1u4bA 772 :YLPDIT T0547 456 :LE 1u4bA 779 :RN Number of specific fragments extracted= 2 number of extra gaps= 1 total=46687 # 1jh6A.449.92 read from T0547.t2k.many.frag # found chain 1jh6A in training set T0547 449 :SMPDFWGLE 1jh6A 93 :TTPEVMEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=46688 # 1gxjA.449.137 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 449 :SMPDFWGLE 1gxjA 622 :TLDDAIRMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46689 # 1i60A.449.247 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 449 :SMPDFWGLE 1i60A 248 :FRPEYYKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=46690 # 2c1lA.449.319 read from T0547.t2k.many.frag # found chain 2c1lA in template set Warning: unaligning (T0547)S449 (2c1lA)G320 because L (left) conformation "forbidden" or filtered. T0547 450 :MPDFWGLE 2c1lA 321 :TPEHSQLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=46691 # 1e0tA.449.379 read from T0547.t2k.many.frag # found chain 1e0tA in template set T0547 449 :SMPDFWGLE 1e0tA 380 :GGKSARAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=46692 # 1sqwA.449.148 read from T0547.t2k.many.frag # found chain 1sqwA in template set T0547 449 :SMPDFWGLE 1sqwA 149 :STQDCRKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46693 # 1no7A.449.493 read from T0547.t2k.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)S449 (1no7A)H944 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1no7A)D946 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (1no7A)H947 because E (beta_S) conformation "forbidden" or filtered. T0547 450 :M 1no7A 945 :L T0547 453 :FWGLE 1no7A 948 :TIQNG Number of specific fragments extracted= 2 number of extra gaps= 2 total=46695 # 1tr9A.449.275 read from T0547.t2k.many.frag # found chain 1tr9A in training set T0547 449 :SMPDFWGLE 1tr9A 275 :KREAAVEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46696 # 1c8uA.449.185 read from T0547.t2k.many.frag # found chain 1c8uA in template set T0547 449 :SMPDFWGLE 1c8uA 187 :SVPDDLRVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=46697 # 1f06A.449.201 read from T0547.t2k.many.frag # found chain 1f06A in template set T0547 449 :SMPDFWGLE 1f06A 202 :DAADHERIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=46698 # 1hqz1.449.50 read from T0547.t2k.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)G455 (1hqz1)Q57 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (1hqz1)F59 because P (beta_P) conformation "forbidden" or filtered. T0547 449 :SMPDFW 1hqz1 51 :SFHDFL T0547 456 :L 1hqz1 58 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=46700 # 1s5dA.449.89 read from T0547.t2k.many.frag # found chain 1s5dA in training set Warning: unaligning (T0547)M450 (1s5dA)A91 because Y (epsilon') conformation "forbidden" or filtered. T0547 449 :S 1s5dA 90 :T T0547 451 :PDFWGLE 1s5dA 92 :PNMFNVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=46702 # 1ko6A.449.52 read from T0547.t2k.many.frag # found chain 1ko6A in template set Warning: unaligning (T0547)E457 (1ko6A)T737 because P (beta_P) conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1ko6A 729 :SMDDLAKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=46703 # 1umgA.449.274 read from T0547.t2k.many.frag # found chain 1umgA in training set T0547 449 :SMPDFWGLE 1umgA 277 :SQRDAKATR Number of specific fragments extracted= 1 number of extra gaps= 0 total=46704 # 1g8kA.449.628 read from T0547.t2k.many.frag # found chain 1g8kA in training set T0547 449 :SMPDFWGLE 1g8kA 629 :TYDRLRKSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=46705 # 1w0pA.449.311 read from T0547.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)S449 (1w0pA)P312 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1w0pA)D314 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1w0pA)N318 because P (beta_P) conformation "forbidden" or filtered. T0547 450 :M 1w0pA 313 :T T0547 452 :DFW 1w0pA 315 :AAQ T0547 456 :LE 1w0pA 319 :GD Number of specific fragments extracted= 3 number of extra gaps= 3 total=46708 # 1eziA.449.181 read from T0547.t2k.many.frag # found chain 1eziA in template set Warning: unaligning (T0547)E457 (1eziA)N190 because L (left) conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1eziA 182 :DTASLIAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=46709 # 1l8bA.450.41 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 450 :MPDFWGLEQ 1l8bA 69 :VEDFWALYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=46710 # 1dy5A.450.50 read from T0547.t2k.many.frag # found chain 1dy5A in training set T0547 450 :MPDFWGLEQ 1dy5A 51 :LADVQAVCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=46711 # 1zx8A.450.116 read from T0547.t2k.many.frag # found chain 1zx8A in template set T0547 450 :MPDFWGLEQ 1zx8A 105 :LEDLKKIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46712 # 2bh1A.450.37 read from T0547.t2k.many.frag # found chain 2bh1A in template set T0547 450 :MPDFWGLEQ 2bh1A 38 :WEALHEIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=46713 # 1t3tA.450.150 read from T0547.t2k.many.frag # found chain 1t3tA in template set T0547 450 :MPDFWGLEQ 1t3tA 143 :LTDAEKLFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=46714 # 2cfeA.450.133 read from T0547.t2k.many.frag # found chain 2cfeA in training set T0547 450 :MPDFWGLEQ 2cfeA 134 :MNVVKAIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46715 # 1xv5A.450.237 read from T0547.t2k.many.frag # found chain 1xv5A in training set T0547 450 :MPDFWGLEQ 1xv5A 1237 :SPAFIAIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=46716 # 1guiA.450.54 read from T0547.t2k.many.frag # found chain 1guiA in template set Warning: unaligning (T0547)M450 (1guiA)G57 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1guiA)T58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (1guiA)D59 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q458 (1guiA)F65 because D (zeta) conformation "forbidden" or filtered. T0547 453 :FWGLE 1guiA 60 :TWHIQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=46717 # 1xzpB.450.54 read from T0547.t2k.many.frag # found chain 1xzpB in template set Warning: unaligning (T0547)M450 (1xzpB)G23 because Y (epsilon') conformation "forbidden" or filtered. T0547 451 :PDFWGLEQ 1xzpB 24 :PDSWKIVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=46718 # 2c1lA.450.320 read from T0547.t2k.many.frag # found chain 2c1lA in template set T0547 450 :MPDFWGLEQ 2c1lA 321 :TPEHSQLDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=46719 # 1xdnA.450.203 read from T0547.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)G455 (1xdnA)A256 because G (3-10) conformation "forbidden" or filtered. T0547 450 :MPDFW 1xdnA 251 :LDECL T0547 456 :LEQ 1xdnA 257 :FDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46721 # 1e0tA.450.380 read from T0547.t2k.many.frag # found chain 1e0tA in template set T0547 450 :MPDFWGLEQ 1e0tA 381 :GKSARAVRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46722 # 1gxjA.450.138 read from T0547.t2k.many.frag # found chain 1gxjA in template set T0547 450 :MPDFWGLEQ 1gxjA 623 :LDDAIRMKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46723 # 1tr9A.450.276 read from T0547.t2k.many.frag # found chain 1tr9A in training set T0547 450 :MPDFWGLEQ 1tr9A 276 :REAAVEVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46724 # 1i60A.450.248 read from T0547.t2k.many.frag # found chain 1i60A in training set T0547 450 :MPDFWGLEQ 1i60A 249 :RPEYYKLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46725 # 1g8kA.450.629 read from T0547.t2k.many.frag # found chain 1g8kA in training set T0547 450 :MPDFWGLEQ 1g8kA 630 :YDRLRKSGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=46726 # 1txoA.450.146 read from T0547.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0547)G455 (1txoA)S155 because G (3-10) conformation "forbidden" or filtered. T0547 450 :MPDFW 1txoA 150 :PEEAH T0547 456 :LEQ 1txoA 156 :HPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=46728 # 1jh6A.450.93 read from T0547.t2k.many.frag # found chain 1jh6A in training set T0547 450 :MPDFWGLEQ 1jh6A 94 :TPEVMEAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=46729 # 1no7A.450.494 read from T0547.t2k.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P451 (1no7A)D946 because G (3-10) conformation "forbidden" or filtered. T0547 450 :M 1no7A 945 :L T0547 452 :DFWGLEQ 1no7A 947 :HTIQNGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=46731 # 1w0pA.450.312 read from T0547.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)P451 (1w0pA)D314 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (1w0pA)A315 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F453 (1w0pA)A316 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1w0pA)N318 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (1w0pA)D320 because L (left) conformation "forbidden" or filtered. T0547 450 :M 1w0pA 313 :T T0547 454 :W 1w0pA 317 :Q T0547 456 :L 1w0pA 319 :G T0547 458 :Q 1w0pA 321 :R Number of specific fragments extracted= 4 number of extra gaps= 3 total=46735 # 1sqwA.450.149 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)G455 (1sqwA)K155 because G (3-10) conformation "forbidden" or filtered. T0547 450 :MPDFW 1sqwA 150 :TQDCR T0547 456 :LEQ 1sqwA 156 :VDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=46737 # 1tu1A.450.121 read from T0547.t2k.many.frag # found chain 1tu1A in template set T0547 450 :MPDFWGLEQ 1tu1A 120 :PADLPHHEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=46738 # 1u4bA.450.476 read from T0547.t2k.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)W454 (1u4bA)T777 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1u4bA)S778 because P (beta_P) conformation "forbidden" or filtered. T0547 450 :MPDF 1u4bA 773 :LPDI T0547 456 :LEQ 1u4bA 779 :RNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=46740 # 2ftrA.450.17 read from T0547.t2k.many.frag # found chain 2ftrA in training set T0547 450 :MPDFWGLEQ 2ftrA 17 :PEDKQAFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=46741 # 1eziA.450.182 read from T0547.t2k.many.frag # found chain 1eziA in template set Warning: unaligning (T0547)Q458 (1eziA)C191 because Y (epsilon') conformation "forbidden" or filtered. T0547 450 :MPDFWGLE 1eziA 183 :TASLIANN Number of specific fragments extracted= 1 number of extra gaps= 1 total=46742 # 1f06A.450.202 read from T0547.t2k.many.frag # found chain 1f06A in template set T0547 450 :MPDFWGLEQ 1f06A 203 :AADHERIEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=46743 # 1gq8A.450.208 read from T0547.t2k.many.frag # found chain 1gq8A in training set T0547 450 :MPDFWGLEQ 1gq8A 209 :TSDLQPVQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=46744 # 1d0cA.450.283 read from T0547.t2k.many.frag # found chain 1d0cA in training set T0547 450 :MPDFWGLEQ 1d0cA 322 :LEWFAALGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46745 # 1dj0A.450.138 read from T0547.t2k.many.frag # found chain 1dj0A in training set T0547 450 :MPDFWGLEQ 1dj0A 145 :AERMHRAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=46746 1yc61 expands to /projects/compbio/data/pdb/1yc6.pdb.gz 1yc61:# 1yc61.450.76 read from T0547.t2k.many.frag # adding 1yc61 to template set # found chain 1yc61 in template set T0547 450 :MPDFWGLEQ 1yc61 112 :QAQAEAAFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=46747 # 1l8bA.451.42 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 451 :PDFWGLEQN 1l8bA 70 :EDFWALYNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=46748 # 1dy5A.451.51 read from T0547.t2k.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N459 (1dy5A)Q60 because Y (epsilon') conformation "forbidden" or filtered. T0547 451 :PDFWGLEQ 1dy5A 52 :ADVQAVCS Number of specific fragments extracted= 1 number of extra gaps= 1 total=46749 # 1t3tA.451.151 read from T0547.t2k.many.frag # found chain 1t3tA in template set T0547 451 :PDFWGLEQN 1t3tA 144 :TDAEKLFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=46750 # 1zx8A.451.117 read from T0547.t2k.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)N459 (1zx8A)G114 because T (delta_L) conformation "forbidden" or filtered. T0547 451 :PDFWGLEQ 1zx8A 106 :EDLKKIKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=46751 # 2cfeA.451.134 read from T0547.t2k.many.frag # found chain 2cfeA in training set T0547 451 :PDFWGLEQN 2cfeA 135 :NVVKAIEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=46752 # 2bh1A.451.38 read from T0547.t2k.many.frag # found chain 2bh1A in template set T0547 451 :PDFWGLEQN 2bh1A 39 :EALHEIESY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46753 # 1e0tA.451.381 read from T0547.t2k.many.frag # found chain 1e0tA in template set T0547 451 :PDFWGLEQN 1e0tA 382 :KSARAVRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46754 # 1txoA.451.147 read from T0547.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0547)G455 (1txoA)S155 because G (3-10) conformation "forbidden" or filtered. T0547 451 :PDFW 1txoA 151 :EEAH T0547 456 :LEQN 1txoA 156 :HPQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=46756 # 2c1lA.451.321 read from T0547.t2k.many.frag # found chain 2c1lA in template set T0547 451 :PDFWGLEQN 2c1lA 322 :PEHSQLDPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46757 # 1g8kA.451.630 read from T0547.t2k.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)E457 (1g8kA)G637 because S (epsilon) conformation "forbidden" or filtered. T0547 451 :PDFWGL 1g8kA 631 :DRLRKS T0547 458 :QN 1g8kA 638 :NN Number of specific fragments extracted= 2 number of extra gaps= 1 total=46759 # 1xdnA.451.204 read from T0547.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)G455 (1xdnA)A256 because G (3-10) conformation "forbidden" or filtered. T0547 451 :PDFW 1xdnA 252 :DECL T0547 456 :LEQN 1xdnA 257 :FDVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=46761 # 1eziA.451.183 read from T0547.t2k.many.frag # found chain 1eziA in template set Warning: unaligning (T0547)E457 (1eziA)N190 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q458 (1eziA)C191 because Y (epsilon') conformation "forbidden" or filtered. T0547 451 :PDFWGL 1eziA 184 :ASLIAN T0547 459 :N 1eziA 192 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=46763 # 1w0pA.451.313 read from T0547.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)P451 (1w0pA)D314 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (1w0pA)A315 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L456 (1w0pA)G319 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1w0pA)I322 because P (beta_P) conformation "forbidden" or filtered. T0547 453 :FWG 1w0pA 316 :AQN T0547 457 :EQ 1w0pA 320 :DR Number of specific fragments extracted= 2 number of extra gaps= 3 total=46765 # 1xzpB.451.55 read from T0547.t2k.many.frag # found chain 1xzpB in template set T0547 451 :PDFWGLEQN 1xzpB 24 :PDSWKIVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46766 # 1qg8A.451.191 read from T0547.t2k.many.frag # found chain 1qg8A in training set T0547 451 :PDFWGLEQN 1qg8A 193 :RFFWRVNHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46767 # 1xv5A.451.238 read from T0547.t2k.many.frag # found chain 1xv5A in training set T0547 451 :PDFWGLEQN 1xv5A 1238 :PAFIAIKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46768 # 1d0cA.451.284 read from T0547.t2k.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)N459 (1d0cA)R331 because Y (epsilon') conformation "forbidden" or filtered. T0547 451 :PDFWGLEQ 1d0cA 323 :EWFAALGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=46769 # 1no7A.451.495 read from T0547.t2k.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P451 (1no7A)D946 because G (3-10) conformation "forbidden" or filtered. T0547 452 :DFWGLEQN 1no7A 947 :HTIQNGDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=46770 # 1sx5A.451.109 read from T0547.t2k.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)P451 (1sx5A)T111 because G (3-10) conformation "forbidden" or filtered. T0547 452 :DFWGLEQN 1sx5A 112 :SFIRNNTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=46771 # 1guiA.451.55 read from T0547.t2k.many.frag # found chain 1guiA in template set Warning: unaligning (T0547)P451 (1guiA)T58 because G (3-10) conformation "forbidden" or filtered. T0547 452 :DFWGLEQN 1guiA 59 :DTWHIQFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=46772 # 1dj0A.451.139 read from T0547.t2k.many.frag # found chain 1dj0A in training set T0547 451 :PDFWGLEQN 1dj0A 146 :ERMHRAAQC Number of specific fragments extracted= 1 number of extra gaps= 0 total=46773 # 1i24A.451.227 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)L456 (1i24A)H223 because Y (epsilon') conformation "forbidden" or filtered. T0547 451 :PDFWG 1i24A 218 :DETEM T0547 457 :EQN 1i24A 224 :EEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=46775 # 1yc61.451.77 read from T0547.t2k.many.frag # found chain 1yc61 in template set Warning: unaligning (T0547)D452 (1yc61)Q114 because E (beta_S) conformation "forbidden" or filtered. T0547 451 :P 1yc61 113 :A T0547 453 :FWGLEQN 1yc61 115 :AEAAFQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46777 # 1sg4A.451.172 read from T0547.t2k.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)E457 (1sg4A)G179 because T (delta_L) conformation "forbidden" or filtered. T0547 451 :PDFWGL 1sg4A 173 :AEALQV T0547 458 :QN 1sg4A 180 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46779 # 1sqwA.451.150 read from T0547.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)G455 (1sqwA)K155 because G (3-10) conformation "forbidden" or filtered. T0547 451 :PDFW 1sqwA 151 :QDCR T0547 456 :LEQN 1sqwA 156 :VDPM Number of specific fragments extracted= 2 number of extra gaps= 1 total=46781 # 1gq8A.451.209 read from T0547.t2k.many.frag # found chain 1gq8A in training set T0547 451 :PDFWGLEQN 1gq8A 210 :SDLQPVQSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=46782 # 1q52A.451.221 read from T0547.t2k.many.frag # found chain 1q52A in training set T0547 451 :PDFWGLEQN 1q52A 222 :EQMHQMGAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=46783 # 1pot.451.128 read from T0547.t2k.many.frag # found chain 1pot in training set T0547 451 :PDFWGLEQN 1pot 152 :ADLWKPEYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=46784 # 1w2xA.451.625 read from T0547.t2k.many.frag # found chain 1w2xA in template set T0547 451 :PDFWGLEQN 1w2xA 2101 :SRMVAKGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=46785 # 1h6kA.451.495 read from T0547.t2k.many.frag # found chain 1h6kA in template set Warning: unaligning (T0547)N459 (1h6kA)D523 because G (3-10) conformation "forbidden" or filtered. T0547 451 :PDFWGLEQ 1h6kA 515 :DEIFSILK Number of specific fragments extracted= 1 number of extra gaps= 1 total=46786 # 1l8bA.452.43 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 452 :DFWGLEQNF 1l8bA 71 :DFWALYNHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=46787 # 1qg8A.452.192 read from T0547.t2k.many.frag # found chain 1qg8A in training set T0547 452 :DFWGLEQNF 1qg8A 194 :FFWRVNHFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46788 # 1t3tA.452.152 read from T0547.t2k.many.frag # found chain 1t3tA in template set T0547 452 :DFWGLEQNF 1t3tA 145 :DAEKLFIHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=46789 # 1e0tA.452.382 read from T0547.t2k.many.frag # found chain 1e0tA in template set T0547 452 :DFWGLEQNF 1e0tA 383 :SARAVRKYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46790 # 1txoA.452.148 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 452 :DFWGLEQNF 1txoA 152 :EAHSHPQRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=46791 # 1g8kA.452.631 read from T0547.t2k.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)E457 (1g8kA)G637 because S (epsilon) conformation "forbidden" or filtered. T0547 452 :DFWGL 1g8kA 632 :RLRKS T0547 458 :QNF 1g8kA 638 :NNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=46793 # 2cfeA.452.135 read from T0547.t2k.many.frag # found chain 2cfeA in training set T0547 452 :DFWGLEQNF 2cfeA 136 :VVKAIEAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=46794 # 2c1lA.452.322 read from T0547.t2k.many.frag # found chain 2c1lA in template set T0547 452 :DFWGLEQNF 2c1lA 323 :EHSQLDPYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46795 # 1eziA.452.184 read from T0547.t2k.many.frag # found chain 1eziA in template set Warning: unaligning (T0547)E457 (1eziA)N190 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q458 (1eziA)C191 because Y (epsilon') conformation "forbidden" or filtered. T0547 452 :DFWGL 1eziA 185 :SLIAN T0547 459 :NF 1eziA 192 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=46797 # 1dy5A.452.52 read from T0547.t2k.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N459 (1dy5A)Q60 because Y (epsilon') conformation "forbidden" or filtered. T0547 452 :DFWGLEQ 1dy5A 53 :DVQAVCS T0547 460 :F 1dy5A 61 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=46799 # 1d0cA.452.285 read from T0547.t2k.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)E457 (1d0cA)G329 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1d0cA)R331 because Y (epsilon') conformation "forbidden" or filtered. T0547 452 :DFWGL 1d0cA 324 :WFAAL T0547 458 :Q 1d0cA 330 :L T0547 460 :F 1d0cA 332 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=46802 # 1w0pA.452.314 read from T0547.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)D452 (1w0pA)A315 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L456 (1w0pA)G319 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (1w0pA)D320 because L (left) conformation "forbidden" or filtered. T0547 453 :FWG 1w0pA 316 :AQN T0547 458 :QNF 1w0pA 321 :RIK Number of specific fragments extracted= 2 number of extra gaps= 2 total=46804 # 1xv5A.452.239 read from T0547.t2k.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)F460 (1xv5A)G1247 because T (delta_L) conformation "forbidden" or filtered. T0547 452 :DFWGLEQN 1xv5A 1239 :AFIAIKEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=46805 # 1sx5A.452.110 read from T0547.t2k.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)G455 (1sx5A)R115 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F460 (1sx5A)N120 because L (left) conformation "forbidden" or filtered. T0547 452 :DFW 1sx5A 112 :SFI T0547 456 :LEQN 1sx5A 116 :NNTK Number of specific fragments extracted= 2 number of extra gaps= 2 total=46807 # 1zx8A.452.118 read from T0547.t2k.many.frag # found chain 1zx8A in template set T0547 452 :DFWGLEQNF 1zx8A 107 :DLKKIKDGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=46808 # 1xdnA.452.205 read from T0547.t2k.many.frag # found chain 1xdnA in training set T0547 452 :DFWGLEQNF 1xdnA 253 :ECLAFDVEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=46809 # 2a6zA.452.134 read from T0547.t2k.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)N459 (2a6zA)S147 because P (beta_P) conformation "forbidden" or filtered. T0547 452 :DFWGLEQ 2a6zA 140 :KTKIYDQ T0547 460 :F 2a6zA 148 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=46811 # 1xzpB.452.56 read from T0547.t2k.many.frag # found chain 1xzpB in template set T0547 452 :DFWGLEQNF 1xzpB 25 :DSWKIVQKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=46812 # 1dj0A.452.140 read from T0547.t2k.many.frag # found chain 1dj0A in training set T0547 452 :DFWGLEQNF 1dj0A 147 :RMHRAAQCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46813 # 1h6kA.452.496 read from T0547.t2k.many.frag # found chain 1h6kA in template set T0547 452 :DFWGLEQNF 1h6kA 516 :EIFSILKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=46814 # 2bh1A.452.39 read from T0547.t2k.many.frag # found chain 2bh1A in template set T0547 452 :DFWGLEQNF 2bh1A 40 :ALHEIESYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46815 # 1no7A.452.496 read from T0547.t2k.many.frag # found chain 1no7A in template set T0547 452 :DFWGLEQNF 1no7A 947 :HTIQNGDYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46816 # 1yc61.452.78 read from T0547.t2k.many.frag # found chain 1yc61 in template set Warning: unaligning (T0547)N459 (1yc61)V121 because G (3-10) conformation "forbidden" or filtered. T0547 452 :DFWGLEQ 1yc61 114 :QAEAAFQ T0547 460 :F 1yc61 122 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=46818 # 1i24A.452.228 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)L456 (1i24A)H223 because Y (epsilon') conformation "forbidden" or filtered. T0547 452 :DFWG 1i24A 219 :ETEM T0547 457 :EQNF 1i24A 224 :EELR Number of specific fragments extracted= 2 number of extra gaps= 1 total=46820 # 1tr9A.452.278 read from T0547.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)N459 (1tr9A)N285 because G (3-10) conformation "forbidden" or filtered. T0547 452 :DFWGLEQ 1tr9A 278 :AAVEVLD T0547 460 :F 1tr9A 286 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=46822 # 1sg4A.452.173 read from T0547.t2k.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)E457 (1sg4A)G179 because T (delta_L) conformation "forbidden" or filtered. T0547 452 :DFWGL 1sg4A 174 :EALQV T0547 458 :QNF 1sg4A 180 :IVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=46824 # 1w2xA.452.626 read from T0547.t2k.many.frag # found chain 1w2xA in template set T0547 452 :DFWGLEQNF 1w2xA 2102 :RMVAKGVIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=46825 # 1gq8A.452.210 read from T0547.t2k.many.frag # found chain 1gq8A in training set T0547 452 :DFWGLEQNF 1gq8A 211 :DLQPVQSSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46826 # 1q52A.452.222 read from T0547.t2k.many.frag # found chain 1q52A in training set T0547 452 :DFWGLEQNF 1q52A 223 :QMHQMGAVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=46827 # 1ql0A.452.96 read from T0547.t2k.many.frag # found chain 1ql0A in training set T0547 452 :DFWGLEQNF 1ql0A 101 :DWESLNYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=46828 # 1qg8A.453.193 read from T0547.t2k.many.frag # found chain 1qg8A in training set T0547 453 :FWGLEQNFP 1qg8A 195 :FWRVNHFYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=46829 # 1l8bA.453.44 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 453 :FWGLEQNFP 1l8bA 72 :FWALYNHIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=46830 # 1g8kA.453.632 read from T0547.t2k.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)F460 (1g8kA)G640 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1g8kA)V641 because E (beta_S) conformation "forbidden" or filtered. T0547 453 :FWGLEQN 1g8kA 633 :LRKSGNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=46831 # 1e0tA.453.383 read from T0547.t2k.many.frag # found chain 1e0tA in template set T0547 453 :FWGLEQNFP 1e0tA 384 :ARAVRKYFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=46832 # 1txoA.453.149 read from T0547.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0547)G455 (1txoA)S155 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F460 (1txoA)S160 because G (3-10) conformation "forbidden" or filtered. T0547 453 :FW 1txoA 153 :AH T0547 456 :LEQN 1txoA 156 :HPQR T0547 461 :P 1txoA 161 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=46835 # 2cfeA.453.136 read from T0547.t2k.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)P461 (2cfeA)S145 because Y (epsilon') conformation "forbidden" or filtered. T0547 453 :FWGLEQNF 2cfeA 137 :VKAIEAEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=46836 # 2c1lA.453.323 read from T0547.t2k.many.frag # found chain 2c1lA in template set T0547 453 :FWGLEQNFP 2c1lA 324 :HSQLDPYAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=46837 # 1t3tA.453.153 read from T0547.t2k.many.frag # found chain 1t3tA in template set T0547 453 :FWGLEQNFP 1t3tA 146 :AEKLFIHHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=46838 # 2a6zA.453.135 read from T0547.t2k.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)P461 (2a6zA)A149 because Y (epsilon') conformation "forbidden" or filtered. T0547 453 :FWGLEQNF 2a6zA 141 :TKIYDQSF Number of specific fragments extracted= 1 number of extra gaps= 1 total=46839 # 1eziA.453.185 read from T0547.t2k.many.frag # found chain 1eziA in template set Warning: unaligning (T0547)E457 (1eziA)N190 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q458 (1eziA)C191 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1eziA)I194 because E (beta_S) conformation "forbidden" or filtered. T0547 453 :FWGL 1eziA 186 :LIAN T0547 459 :NF 1eziA 192 :FF Number of specific fragments extracted= 2 number of extra gaps= 2 total=46841 # 1tr9A.453.279 read from T0547.t2k.many.frag # found chain 1tr9A in training set T0547 453 :FWGLEQNFP 1tr9A 279 :AVEVLDNLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=46842 # 1d0cA.453.286 read from T0547.t2k.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)E457 (1d0cA)G329 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1d0cA)R331 because Y (epsilon') conformation "forbidden" or filtered. T0547 453 :FWGL 1d0cA 325 :FAAL T0547 458 :Q 1d0cA 330 :L T0547 460 :FP 1d0cA 332 :WY Number of specific fragments extracted= 3 number of extra gaps= 2 total=46845 # 1sx5A.453.111 read from T0547.t2k.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)G455 (1sx5A)R115 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F460 (1sx5A)N120 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1sx5A)I121 because E (beta_S) conformation "forbidden" or filtered. T0547 453 :FW 1sx5A 113 :FI T0547 456 :LEQN 1sx5A 116 :NNTK Number of specific fragments extracted= 2 number of extra gaps= 2 total=46847 # 1w0pA.453.315 read from T0547.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)L456 (1w0pA)G319 because T (delta_L) conformation "forbidden" or filtered. T0547 453 :FWG 1w0pA 316 :AQN T0547 457 :EQNFP 1w0pA 320 :DRIKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=46849 # 1sg4A.453.174 read from T0547.t2k.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 453 :FWGLEQNF 1sg4A 175 :ALQVGIVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=46850 # 1i24A.453.229 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)W454 (1i24A)E221 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L456 (1i24A)H223 because Y (epsilon') conformation "forbidden" or filtered. T0547 453 :F 1i24A 220 :T T0547 455 :G 1i24A 222 :M T0547 457 :EQNFP 1i24A 224 :EELRN Number of specific fragments extracted= 3 number of extra gaps= 2 total=46853 # 1w2xA.453.627 read from T0547.t2k.many.frag # found chain 1w2xA in template set Warning: unaligning (T0547)E457 (1w2xA)G2107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1w2xA)K2111 because Y (epsilon') conformation "forbidden" or filtered. T0547 453 :FWGL 1w2xA 2103 :MVAK T0547 458 :QNF 1w2xA 2108 :VIS Number of specific fragments extracted= 2 number of extra gaps= 2 total=46855 # 1v6sA.453.152 read from T0547.t2k.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)N459 (1v6sA)L159 because G (3-10) conformation "forbidden" or filtered. T0547 453 :FWGLEQ 1v6sA 153 :VVGVAR T0547 460 :FP 1v6sA 160 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=46857 # 1xv5A.453.240 read from T0547.t2k.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)F460 (1xv5A)G1247 because T (delta_L) conformation "forbidden" or filtered. T0547 453 :FWGLEQN 1xv5A 1240 :FIAIKEK T0547 461 :P 1xv5A 1248 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=46859 # 1hx0A.453.276 read from T0547.t2k.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 453 :FWGLEQNF 1hx0A 277 :LKNWGEGW Number of specific fragments extracted= 1 number of extra gaps= 1 total=46860 # 1kwgA.453.430 read from T0547.t2k.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)F460 (1kwgA)G438 because T (delta_L) conformation "forbidden" or filtered. T0547 453 :FWGLEQN 1kwgA 431 :YSALRRL T0547 461 :P 1kwgA 439 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=46862 # 1dj0A.453.141 read from T0547.t2k.many.frag # found chain 1dj0A in training set T0547 453 :FWGLEQNFP 1dj0A 148 :MHRAAQCLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46863 # 1gq8A.453.211 read from T0547.t2k.many.frag # found chain 1gq8A in training set Warning: unaligning (T0547)N459 (1gq8A)S218 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F460 (1gq8A)F219 because D (zeta) conformation "forbidden" or filtered. T0547 453 :FWGLEQ 1gq8A 212 :LQPVQS T0547 461 :P 1gq8A 220 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=46865 # 1no7A.453.497 read from T0547.t2k.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)E457 (1no7A)G952 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1no7A)Y956 because E (beta_S) conformation "forbidden" or filtered. T0547 453 :FWGL 1no7A 948 :TIQN T0547 458 :QNF 1no7A 953 :DYF Number of specific fragments extracted= 2 number of extra gaps= 2 total=46867 # 1m22A.453.299 read from T0547.t2k.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)E457 (1m22A)G341 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1m22A)V345 because E (beta_S) conformation "forbidden" or filtered. T0547 453 :FWGL 1m22A 337 :LRRA T0547 458 :QNF 1m22A 342 :AVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=46869 # 1q52A.453.223 read from T0547.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)P461 (1q52A)A232 because Y (epsilon') conformation "forbidden" or filtered. T0547 453 :FWGLEQNF 1q52A 224 :MHQMGAVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=46870 # 1h6kA.453.497 read from T0547.t2k.many.frag # found chain 1h6kA in template set T0547 453 :FWGLEQNFP 1h6kA 517 :IFSILKDVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=46871 # 1yc61.453.79 read from T0547.t2k.many.frag # found chain 1yc61 in template set Warning: unaligning (T0547)P461 (1yc61)L123 because G (3-10) conformation "forbidden" or filtered. T0547 453 :FWGLEQNF 1yc61 115 :AEAAFQVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=46872 # 2bh1A.453.40 read from T0547.t2k.many.frag # found chain 2bh1A in template set T0547 453 :FWGLEQNFP 2bh1A 41 :LHEIESYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46873 # 1ql0A.453.97 read from T0547.t2k.many.frag # found chain 1ql0A in training set Warning: unaligning (T0547)P461 (1ql0A)N110 because G (3-10) conformation "forbidden" or filtered. T0547 453 :FWGLEQNF 1ql0A 102 :WESLNYLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=46874 # 1qg8A.454.194 read from T0547.t2k.many.frag # found chain 1qg8A in training set T0547 454 :WGLEQNFPI 1qg8A 196 :WRVNHFYPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46875 # 1g8kA.454.633 read from T0547.t2k.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)E457 (1g8kA)G637 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F460 (1g8kA)G640 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1g8kA)V641 because E (beta_S) conformation "forbidden" or filtered. T0547 454 :WGL 1g8kA 634 :RKS T0547 458 :QN 1g8kA 638 :NN T0547 462 :I 1g8kA 642 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=46878 # 1e0tA.454.384 read from T0547.t2k.many.frag # found chain 1e0tA in template set T0547 454 :WGLEQNFPI 1e0tA 385 :RAVRKYFPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46879 # 1txoA.454.150 read from T0547.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0547)G455 (1txoA)S155 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q458 (1txoA)Q158 because G (3-10) conformation "forbidden" or filtered. T0547 454 :W 1txoA 154 :H T0547 456 :LE 1txoA 156 :HP T0547 459 :NFPI 1txoA 159 :RSLI Number of specific fragments extracted= 3 number of extra gaps= 2 total=46882 # 2a6zA.454.136 read from T0547.t2k.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)P461 (2a6zA)A149 because Y (epsilon') conformation "forbidden" or filtered. T0547 454 :WGLEQNF 2a6zA 142 :KIYDQSF T0547 462 :I 2a6zA 150 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=46884 # 1tr9A.454.280 read from T0547.t2k.many.frag # found chain 1tr9A in training set T0547 454 :WGLEQNFPI 1tr9A 280 :VEVLDNLPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=46885 # 1t6eX.454.185 read from T0547.t2k.many.frag # found chain 1t6eX in training set T0547 454 :WGLEQNFPI 1t6eX 186 :PQFTQSMPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46886 # 2c1lA.454.324 read from T0547.t2k.many.frag # found chain 2c1lA in template set T0547 454 :WGLEQNFPI 2c1lA 325 :SQLDPYAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=46887 # 1sx5A.454.112 read from T0547.t2k.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)G455 (1sx5A)R115 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1sx5A)I121 because E (beta_S) conformation "forbidden" or filtered. T0547 454 :W 1sx5A 114 :I T0547 456 :LEQNF 1sx5A 116 :NNTKN T0547 462 :I 1sx5A 122 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=46890 # 1sg4A.454.175 read from T0547.t2k.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 454 :WGLEQNF 1sg4A 176 :LQVGIVD T0547 462 :I 1sg4A 184 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=46892 # 1w0pA.454.316 read from T0547.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)E457 (1w0pA)D320 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (1w0pA)W325 because G (3-10) conformation "forbidden" or filtered. T0547 454 :WGL 1w0pA 317 :QNG T0547 458 :QNFP 1w0pA 321 :RIKP Number of specific fragments extracted= 2 number of extra gaps= 2 total=46894 # 2cfeA.454.137 read from T0547.t2k.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)P461 (2cfeA)S145 because Y (epsilon') conformation "forbidden" or filtered. T0547 454 :WGLEQNF 2cfeA 138 :KAIEAEG T0547 462 :I 2cfeA 146 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=46896 # 1d0cA.454.287 read from T0547.t2k.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)E457 (1d0cA)G329 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1d0cA)R331 because Y (epsilon') conformation "forbidden" or filtered. T0547 454 :WGL 1d0cA 326 :AAL T0547 458 :Q 1d0cA 330 :L T0547 460 :FPI 1d0cA 332 :WYA Number of specific fragments extracted= 3 number of extra gaps= 2 total=46899 # 1i24A.454.230 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)L456 (1i24A)H223 because Y (epsilon') conformation "forbidden" or filtered. T0547 454 :WG 1i24A 221 :EM T0547 457 :EQNFPI 1i24A 224 :EELRNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=46901 # 1l8bA.454.45 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 454 :WGLEQNFPI 1l8bA 73 :WALYNHIQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=46902 # 2a6aA.454.91 read from T0547.t2k.many.frag # found chain 2a6aA in template set T0547 454 :WGLEQNFPI 2a6aA 80 :LVSPYDIPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=46903 # 1hx0A.454.277 read from T0547.t2k.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)G455 (1hx0A)N279 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (1hx0A)G281 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 454 :W 1hx0A 278 :K T0547 456 :L 1hx0A 280 :W T0547 458 :QNF 1hx0A 282 :EGW T0547 462 :I 1hx0A 286 :F Number of specific fragments extracted= 4 number of extra gaps= 3 total=46907 # 1kwgA.454.431 read from T0547.t2k.many.frag # found chain 1kwgA in training set T0547 454 :WGLEQNFPI 1kwgA 432 :SALRRLGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=46908 # 1v6sA.454.153 read from T0547.t2k.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)N459 (1v6sA)L159 because G (3-10) conformation "forbidden" or filtered. T0547 454 :WGLEQ 1v6sA 154 :VGVAR T0547 460 :FPI 1v6sA 160 :LPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=46910 # 1no7A.454.498 read from T0547.t2k.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)E457 (1no7A)G952 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1no7A)Y956 because E (beta_S) conformation "forbidden" or filtered. T0547 454 :WGL 1no7A 949 :IQN T0547 458 :QNF 1no7A 953 :DYF T0547 462 :I 1no7A 957 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=46913 # 1w2xA.454.628 read from T0547.t2k.many.frag # found chain 1w2xA in template set Warning: unaligning (T0547)E457 (1w2xA)G2107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1w2xA)K2111 because Y (epsilon') conformation "forbidden" or filtered. T0547 454 :WGL 1w2xA 2104 :VAK T0547 458 :QNF 1w2xA 2108 :VIS T0547 462 :I 1w2xA 2112 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=46916 # 1jihA.454.374 read from T0547.t2k.many.frag # found chain 1jihA in template set T0547 454 :WGLEQNFPI 1jihA 375 :FKLSRGRYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=46917 # 1m22A.454.300 read from T0547.t2k.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)E457 (1m22A)G341 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q458 (1m22A)A342 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1m22A)V345 because E (beta_S) conformation "forbidden" or filtered. T0547 454 :WGL 1m22A 338 :RRA T0547 459 :NF 1m22A 343 :VV T0547 462 :I 1m22A 346 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=46920 # 1ql0A.454.98 read from T0547.t2k.many.frag # found chain 1ql0A in training set Warning: unaligning (T0547)P461 (1ql0A)N110 because G (3-10) conformation "forbidden" or filtered. T0547 454 :WGLEQNF 1ql0A 103 :ESLNYLS T0547 462 :I 1ql0A 111 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=46922 # 1gvhA.454.308 read from T0547.t2k.many.frag # found chain 1gvhA in template set T0547 454 :WGLEQNFPI 1gvhA 309 :KELGQSLPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=46923 # 1ewnA.454.111 read from T0547.t2k.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)P461 (1ewnA)S198 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1ewnA)V208 T0547 454 :WGLEQNF 1ewnA 191 :ETMRQLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=46924 # 1gq8A.454.212 read from T0547.t2k.many.frag # found chain 1gq8A in training set T0547 454 :WGLEQNFPI 1gq8A 213 :QPVQSSFPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=46925 # 1eziA.454.186 read from T0547.t2k.many.frag # found chain 1eziA in template set Warning: unaligning (T0547)Q458 (1eziA)C191 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1eziA)I194 because E (beta_S) conformation "forbidden" or filtered. T0547 454 :WGLE 1eziA 187 :IANN T0547 459 :NF 1eziA 192 :FF T0547 462 :I 1eziA 195 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=46928 # 1t3tA.454.154 read from T0547.t2k.many.frag # found chain 1t3tA in template set T0547 454 :WGLEQNFPI 1t3tA 147 :EKLFIHHQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=46929 # 1n35A.454.1104 read from T0547.t2k.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)P461 (1n35A)M1112 because E (beta_S) conformation "forbidden" or filtered. T0547 454 :WGLEQNF 1n35A 1105 :YFAQTLF T0547 462 :I 1n35A 1113 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=46931 # 1qg8A.455.195 read from T0547.t2k.many.frag # found chain 1qg8A in training set T0547 455 :GLEQNFPIM 1qg8A 197 :RVNHFYPFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46932 # 1g8kA.455.634 read from T0547.t2k.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)F460 (1g8kA)G640 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1g8kA)V641 because E (beta_S) conformation "forbidden" or filtered. T0547 455 :GLEQN 1g8kA 635 :KSGNN T0547 462 :IM 1g8kA 642 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=46934 # 1t6eX.455.186 read from T0547.t2k.many.frag # found chain 1t6eX in training set T0547 455 :GLEQNFPIM 1t6eX 187 :QFTQSMPYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=46935 # 2a6zA.455.137 read from T0547.t2k.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)N459 (2a6zA)S147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (2a6zA)A149 because Y (epsilon') conformation "forbidden" or filtered. T0547 455 :GLEQ 2a6zA 143 :IYDQ T0547 460 :F 2a6zA 148 :F T0547 462 :IM 2a6zA 150 :SC Number of specific fragments extracted= 3 number of extra gaps= 2 total=46938 # 1txoA.455.151 read from T0547.t2k.many.frag # found chain 1txoA in template set T0547 455 :GLEQNFPIM 1txoA 155 :SHPQRSLIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=46939 # 1tr9A.455.281 read from T0547.t2k.many.frag # found chain 1tr9A in training set T0547 455 :GLEQNFPIM 1tr9A 281 :EVLDNLPIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=46940 # 1sx5A.455.113 read from T0547.t2k.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)P461 (1sx5A)I121 because E (beta_S) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1sx5A 115 :RNNTKN T0547 462 :IM 1sx5A 122 :VY Number of specific fragments extracted= 2 number of extra gaps= 1 total=46942 # 2a6aA.455.92 read from T0547.t2k.many.frag # found chain 2a6aA in template set T0547 455 :GLEQNFPIM 2a6aA 81 :VSPYDIPVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46943 # 1e0tA.455.385 read from T0547.t2k.many.frag # found chain 1e0tA in template set T0547 455 :GLEQNFPIM 1e0tA 386 :AVRKYFPDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=46944 # 1no7A.455.499 read from T0547.t2k.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P461 (1no7A)Y956 because E (beta_S) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1no7A 950 :QNGDYF T0547 462 :IM 1no7A 957 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=46946 # 1gvhA.455.309 read from T0547.t2k.many.frag # found chain 1gvhA in template set T0547 455 :GLEQNFPIM 1gvhA 310 :ELGQSLPRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46947 # 1jihA.455.375 read from T0547.t2k.many.frag # found chain 1jihA in template set Warning: unaligning (T0547)F460 (1jihA)R381 because G (3-10) conformation "forbidden" or filtered. T0547 455 :GLEQN 1jihA 376 :KLSRG T0547 461 :PIM 1jihA 382 :YGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=46949 # 1xgkA.455.268 read from T0547.t2k.many.frag # found chain 1xgkA in training set T0547 455 :GLEQNFPIM 1xgkA 269 :FGEHKAPYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=46950 # 2cbiA.455.371 read from T0547.t2k.many.frag # found chain 2cbiA in template set Warning: unaligning (T0547)G455 (2cbiA)Y402 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (2cbiA)K406 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQ 2cbiA 403 :FKG T0547 460 :FPIM 2cbiA 407 :LALG Number of specific fragments extracted= 2 number of extra gaps= 2 total=46952 # 1hx0A.455.278 read from T0547.t2k.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1hx0A 279 :NWGEGW T0547 462 :IM 1hx0A 286 :FM Number of specific fragments extracted= 2 number of extra gaps= 1 total=46954 # 1i24A.455.231 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)L456 (1i24A)H223 because Y (epsilon') conformation "forbidden" or filtered. T0547 455 :G 1i24A 222 :M T0547 457 :EQNFPIM 1i24A 224 :EELRNRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=46956 # 1vlyA.455.50 read from T0547.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)F460 (1vlyA)Q44 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1vlyA)V45 because E (beta_S) conformation "forbidden" or filtered. T0547 455 :GLEQN 1vlyA 39 :KYMQG T0547 462 :IM 1vlyA 46 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=46958 # 1sg4A.455.176 read from T0547.t2k.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1sg4A 177 :QVGIVD T0547 462 :IM 1sg4A 184 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46960 # 1gq8A.455.213 read from T0547.t2k.many.frag # found chain 1gq8A in training set T0547 455 :GLEQNFPIM 1gq8A 214 :PVQSSFPTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46961 # 1ql0A.455.99 read from T0547.t2k.many.frag # found chain 1ql0A in training set Warning: unaligning (T0547)P461 (1ql0A)N110 because G (3-10) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1ql0A 104 :SLNYLS T0547 462 :IM 1ql0A 111 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=46963 # 1kwgA.455.432 read from T0547.t2k.many.frag # found chain 1kwgA in training set T0547 455 :GLEQNFPIM 1kwgA 433 :ALRRLGLDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=46964 # 1d0cA.455.288 read from T0547.t2k.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)E457 (1d0cA)G329 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1d0cA)R331 because Y (epsilon') conformation "forbidden" or filtered. T0547 455 :GL 1d0cA 327 :AL T0547 458 :Q 1d0cA 330 :L T0547 460 :FPIM 1d0cA 332 :WYAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=46967 # 1m22A.455.301 read from T0547.t2k.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)P461 (1m22A)V345 because E (beta_S) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1m22A 339 :RAGAVV T0547 462 :IM 1m22A 346 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=46969 # 1w0pA.455.317 read from T0547.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)L456 (1w0pA)G319 because T (delta_L) conformation "forbidden" or filtered. T0547 455 :G 1w0pA 318 :N T0547 457 :EQNFPIM 1w0pA 320 :DRIKPWM Number of specific fragments extracted= 2 number of extra gaps= 1 total=46971 # 1ewnA.455.112 read from T0547.t2k.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)P461 (1ewnA)S198 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1ewnA)V208 T0547 455 :GLEQNF 1ewnA 192 :TMRQLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=46972 # 1umgA.455.263 read from T0547.t2k.many.frag # found chain 1umgA in training set Warning: unaligning (T0547)L456 (1umgA)G267 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q458 (1umgA)H269 because Y (epsilon') conformation "forbidden" or filtered. T0547 455 :G 1umgA 266 :R T0547 457 :E 1umgA 268 :S T0547 459 :NFPIM 1umgA 270 :YGPLM Number of specific fragments extracted= 3 number of extra gaps= 2 total=46975 # 1v6sA.455.154 read from T0547.t2k.many.frag # found chain 1v6sA in training set T0547 455 :GLEQNFPIM 1v6sA 155 :GVARLLPAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=46976 # 1uzbA.455.411 read from T0547.t2k.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)I462 (1uzbA)F419 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1uzbA)G420 because Y (epsilon') conformation "forbidden" or filtered. T0547 455 :GLEQNFP 1uzbA 412 :RIAQEEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=46977 # 1br9.455.96 read from T0547.t2k.many.frag # found chain 1br9 in template set T0547 455 :GLEQNFPIM 1br9 97 :HITLCDFIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=46978 # 1n35A.455.1105 read from T0547.t2k.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)P461 (1n35A)M1112 because E (beta_S) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1n35A 1106 :FAQTLF T0547 462 :IM 1n35A 1113 :AK Number of specific fragments extracted= 2 number of extra gaps= 1 total=46980 # 1qg8A.456.196 read from T0547.t2k.many.frag # found chain 1qg8A in training set T0547 456 :LEQNFPIMP 1qg8A 198 :VNHFYPFYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=46981 # 1t6eX.456.187 read from T0547.t2k.many.frag # found chain 1t6eX in training set T0547 456 :LEQNFPIMP 1t6eX 188 :FTQSMPYTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=46982 # 1g8kA.456.635 read from T0547.t2k.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)E457 (1g8kA)G637 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1g8kA)V641 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :L 1g8kA 636 :S T0547 458 :QNF 1g8kA 638 :NNG T0547 462 :IMP 1g8kA 642 :QLP Number of specific fragments extracted= 3 number of extra gaps= 2 total=46985 # 2a6aA.456.93 read from T0547.t2k.many.frag # found chain 2a6aA in template set T0547 456 :LEQNFPIMP 2a6aA 82 :SPYDIPVAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=46986 # 1xgkA.456.269 read from T0547.t2k.many.frag # found chain 1xgkA in training set T0547 456 :LEQNFPIMP 1xgkA 270 :GEHKAPYFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=46987 # 1sx5A.456.114 read from T0547.t2k.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)F460 (1sx5A)N120 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1sx5A)I121 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQN 1sx5A 116 :NNTK T0547 462 :IMP 1sx5A 122 :VYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=46989 # 2a6zA.456.138 read from T0547.t2k.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)P461 (2a6zA)A149 because Y (epsilon') conformation "forbidden" or filtered. T0547 456 :LEQNF 2a6zA 144 :YDQSF T0547 462 :IMP 2a6zA 150 :SCL Number of specific fragments extracted= 2 number of extra gaps= 1 total=46991 # 2cbiA.456.372 read from T0547.t2k.many.frag # found chain 2cbiA in template set Warning: unaligning (T0547)N459 (2cbiA)K406 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (2cbiA)L409 because G (3-10) conformation "forbidden" or filtered. T0547 456 :LEQ 2cbiA 403 :FKG T0547 460 :FP 2cbiA 407 :LA T0547 463 :MP 2cbiA 410 :GP Number of specific fragments extracted= 3 number of extra gaps= 2 total=46994 # 1txoA.456.152 read from T0547.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0547)Q458 (1txoA)Q158 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1txoA)R164 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LE 1txoA 156 :HP T0547 459 :NFPIM 1txoA 159 :RSLIM Number of specific fragments extracted= 2 number of extra gaps= 2 total=46996 # 1tr9A.456.282 read from T0547.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)P464 (1tr9A)E290 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNFPIM 1tr9A 282 :VLDNLPIM Number of specific fragments extracted= 1 number of extra gaps= 1 total=46997 # 1hx0A.456.279 read from T0547.t2k.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)E457 (1hx0A)G281 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 456 :L 1hx0A 280 :W T0547 458 :QNF 1hx0A 282 :EGW T0547 462 :IMP 1hx0A 286 :FMP Number of specific fragments extracted= 3 number of extra gaps= 2 total=47000 # 1no7A.456.500 read from T0547.t2k.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)E457 (1no7A)G952 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1no7A)Y956 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :L 1no7A 951 :N T0547 458 :QNF 1no7A 953 :DYF T0547 462 :IMP 1no7A 957 :PLP Number of specific fragments extracted= 3 number of extra gaps= 2 total=47003 # 1jihA.456.376 read from T0547.t2k.many.frag # found chain 1jihA in template set Warning: unaligning (T0547)N459 (1jihA)G380 because L (left) conformation "forbidden" or filtered. T0547 456 :LEQ 1jihA 377 :LSR T0547 460 :FPIMP 1jihA 381 :RYGLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=47005 # 1umgA.456.264 read from T0547.t2k.many.frag # found chain 1umgA in training set Warning: unaligning (T0547)Q458 (1umgA)H269 because Y (epsilon') conformation "forbidden" or filtered. T0547 456 :LE 1umgA 267 :GS T0547 459 :NFPIMP 1umgA 270 :YGPLMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=47007 # 1gvhA.456.310 read from T0547.t2k.many.frag # found chain 1gvhA in template set Warning: unaligning (T0547)P464 (1gvhA)T319 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNFPIM 1gvhA 311 :LGQSLPRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=47008 # 1e0tA.456.386 read from T0547.t2k.many.frag # found chain 1e0tA in template set T0547 456 :LEQNFPIMP 1e0tA 387 :VRKYFPDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=47009 # 1xk5A.456.186 read from T0547.t2k.many.frag # found chain 1xk5A in template set Warning: unaligning (T0547)N459 (1xk5A)L286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1xk5A)V288 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQ 1xk5A 283 :SDV T0547 460 :F 1xk5A 287 :G T0547 462 :IMP 1xk5A 289 :AVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=47012 # 1vlyA.456.51 read from T0547.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)P461 (1vlyA)V45 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNF 1vlyA 40 :YMQGQ T0547 462 :IMP 1vlyA 46 :TAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=47014 # 1br9.456.97 read from T0547.t2k.many.frag # found chain 1br9 in template set T0547 456 :LEQNFPIMP 1br9 98 :ITLCDFIVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=47015 # 1i24A.456.232 read from T0547.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)L456 (1i24A)H223 because Y (epsilon') conformation "forbidden" or filtered. T0547 457 :EQNFPIMP 1i24A 224 :EELRNRLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=47016 4bcl expands to /projects/compbio/data/pdb/4bcl.pdb.gz 4bcl:Warning: there is no chain 4bcl will retry with 4bclA # 4bcl.456.235 read from T0547.t2k.many.frag # adding 4bcl to template set # found chain 4bcl in template set Warning: unaligning (T0547)L456 because of BadResidue code BAD_PEPTIDE in next template residue (4bcl)S237 Warning: unaligning (T0547)E457 because of BadResidue code BAD_PEPTIDE at template residue (4bcl)S237 T0547 458 :QNFPIMP 4bcl 238 :RWTELFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=47017 # 1sg4A.456.177 read from T0547.t2k.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNF 1sg4A 178 :VGIVD T0547 462 :IMP 1sg4A 184 :VVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=47019 # 1ql0A.456.100 read from T0547.t2k.many.frag # found chain 1ql0A in training set Warning: unaligning (T0547)P461 (1ql0A)N110 because G (3-10) conformation "forbidden" or filtered. T0547 456 :LEQNF 1ql0A 105 :LNYLS T0547 462 :IMP 1ql0A 111 :ITP Number of specific fragments extracted= 2 number of extra gaps= 1 total=47021 # 1zvdA.456.305 read from T0547.t2k.many.frag # found chain 1zvdA in template set Warning: unaligning (T0547)N459 (1zvdA)G677 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1zvdA)S679 because G (3-10) conformation "forbidden" or filtered. T0547 456 :LEQ 1zvdA 674 :FVT T0547 460 :F 1zvdA 678 :S T0547 462 :IMP 1zvdA 680 :RVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=47024 # 1p7tA.456.463 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 456 :LEQNFPIMP 1p7tA 464 :VMEAGPMLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=47025 # 1o75A.456.169 read from T0547.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)P461 (1o75A)H175 because L (left) conformation "forbidden" or filtered. T0547 456 :LEQNF 1o75A 170 :AKEKF T0547 462 :IMP 1o75A 176 :FVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=47027 # 1xmxA.456.355 read from T0547.t2k.many.frag # found chain 1xmxA in template set T0547 456 :LEQNFPIMP 1xmxA 354 :EDLGLALIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=47028 # 1kwgA.456.433 read from T0547.t2k.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)P464 (1kwgA)D442 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNFPIM 1kwgA 434 :LRRLGLDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=47029 # 1m65A.456.229 read from T0547.t2k.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)P461 (1m65A)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 456 :LEQNF 1m65A 230 :FLESR T0547 462 :IMP 1m65A 236 :MAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=47031 # 1m22A.456.302 read from T0547.t2k.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)P461 (1m22A)V345 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1m22A)E348 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNF 1m22A 340 :AGAVV T0547 462 :IM 1m22A 346 :PV Number of specific fragments extracted= 2 number of extra gaps= 2 total=47033 # 1t6eX.457.188 read from T0547.t2k.many.frag # found chain 1t6eX in training set T0547 457 :EQNFPIMPL 1t6eX 189 :TQSMPYTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47034 # 1qg8A.457.197 read from T0547.t2k.many.frag # found chain 1qg8A in training set T0547 457 :EQNFPIMPL 1qg8A 199 :NHFYPFYPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47035 # 2a6aA.457.94 read from T0547.t2k.many.frag # found chain 2a6aA in template set T0547 457 :EQNFPIMPL 2a6aA 83 :PYDIPVAPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47036 # 1xgkA.457.270 read from T0547.t2k.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)N459 (1xgkA)K273 because L (left) conformation "forbidden" or filtered. T0547 457 :EQ 1xgkA 271 :EH T0547 460 :FPIMPL 1xgkA 274 :APYFPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=47038 # 2cbiA.457.373 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 457 :EQNFPIMPL 2cbiA 404 :KGKLALGPM Number of specific fragments extracted= 1 number of extra gaps= 0 total=47039 # 1sx5A.457.115 read from T0547.t2k.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)P461 (1sx5A)I121 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNF 1sx5A 117 :NTKN T0547 462 :IMPL 1sx5A 122 :VYPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=47041 # 4bcl.457.236 read from T0547.t2k.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)E457 because of BadResidue code BAD_PEPTIDE at template residue (4bcl)S237 T0547 458 :QNFPIMPL 4bcl 238 :RWTELFPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=47042 # 1hx0A.457.280 read from T0547.t2k.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)E457 (1hx0A)G281 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F460 (1hx0A)W284 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 458 :QN 1hx0A 282 :EG T0547 462 :IMPL 1hx0A 286 :FMPS Number of specific fragments extracted= 2 number of extra gaps= 2 total=47044 # 2a6zA.457.139 read from T0547.t2k.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)N459 (2a6zA)S147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (2a6zA)A149 because Y (epsilon') conformation "forbidden" or filtered. T0547 457 :EQ 2a6zA 145 :DQ T0547 460 :F 2a6zA 148 :F T0547 462 :IMPL 2a6zA 150 :SCLM Number of specific fragments extracted= 3 number of extra gaps= 2 total=47047 # 1g8kA.457.636 read from T0547.t2k.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)F460 (1g8kA)G640 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1g8kA)V641 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQN 1g8kA 637 :GNN T0547 462 :IMPL 1g8kA 642 :QLPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47049 # 1umgA.457.265 read from T0547.t2k.many.frag # found chain 1umgA in training set Warning: unaligning (T0547)N459 (1umgA)Y270 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F460 (1umgA)G271 because Y (epsilon') conformation "forbidden" or filtered. T0547 457 :EQ 1umgA 268 :SH T0547 461 :PIMPL 1umgA 272 :PLMPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47051 # 1br9.457.98 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)N459 (1br9)C101 because G (3-10) conformation "forbidden" or filtered. T0547 457 :EQ 1br9 99 :TL T0547 460 :FPIMPL 1br9 102 :DFIVPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=47053 # 1txoA.457.153 read from T0547.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0547)P464 (1txoA)R164 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L465 (1txoA)A165 because Y (epsilon') conformation "forbidden" or filtered. T0547 457 :EQNFPIM 1txoA 157 :PQRSLIM Number of specific fragments extracted= 1 number of extra gaps= 1 total=47054 # 1jihA.457.377 read from T0547.t2k.many.frag # found chain 1jihA in template set Warning: unaligning (T0547)N459 (1jihA)G380 because L (left) conformation "forbidden" or filtered. T0547 457 :EQ 1jihA 378 :SR T0547 460 :FPIMPL 1jihA 381 :RYGLPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=47056 # 1tr9A.457.283 read from T0547.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)P464 (1tr9A)E290 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNFPIM 1tr9A 283 :LDNLPIM T0547 465 :L 1tr9A 291 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=47058 # 1vlyA.457.52 read from T0547.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)P461 (1vlyA)V45 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNF 1vlyA 41 :MQGQ T0547 462 :IMPL 1vlyA 46 :TADV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47060 # 1no7A.457.501 read from T0547.t2k.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P461 (1no7A)Y956 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNF 1no7A 952 :GDYF T0547 462 :IMPL 1no7A 957 :PLPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47062 1si2A expands to /projects/compbio/data/pdb/1si2.pdb.gz 1si2A:# 1si2A.457.110 read from T0547.t2k.many.frag # adding 1si2A to template set # found chain 1si2A in template set Warning: unaligning (T0547)F460 (1si2A)H334 because L (left) conformation "forbidden" or filtered. T0547 457 :EQN 1si2A 331 :EQK T0547 461 :PIMPL 1si2A 335 :TYLPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=47064 # 1txvA.457.354 read from T0547.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0547)E457 (1txvA)R355 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1txvA)A359 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1txvA)A361 because P (beta_P) conformation "forbidden" or filtered. T0547 458 :QNF 1txvA 356 :FGS T0547 462 :I 1txvA 360 :I T0547 464 :PL 1txvA 362 :PL Number of specific fragments extracted= 3 number of extra gaps= 3 total=47067 # 1zvdA.457.306 read from T0547.t2k.many.frag # found chain 1zvdA in template set Warning: unaligning (T0547)N459 (1zvdA)G677 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1zvdA)S679 because G (3-10) conformation "forbidden" or filtered. T0547 457 :EQ 1zvdA 675 :VT T0547 460 :F 1zvdA 678 :S T0547 462 :IMPL 1zvdA 680 :RVPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=47070 # 1gvhA.457.311 read from T0547.t2k.many.frag # found chain 1gvhA in template set Warning: unaligning (T0547)P464 (1gvhA)T319 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNFPIM 1gvhA 312 :GQSLPRF T0547 465 :L 1gvhA 320 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=47072 # 1e0tA.457.387 read from T0547.t2k.many.frag # found chain 1e0tA in template set T0547 457 :EQNFPIMPL 1e0tA 388 :RKYFPDATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=47073 # 1w79A.457.39 read from T0547.t2k.many.frag # found chain 1w79A in training set Warning: unaligning (T0547)E457 (1w79A)D40 because L (left) conformation "forbidden" or filtered. T0547 458 :QNFPIMPL 1w79A 41 :GGEQLLPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=47074 # 1m65A.457.230 read from T0547.t2k.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)P461 (1m65A)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 457 :EQNF 1m65A 231 :LESR T0547 462 :IMPL 1m65A 236 :MAPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=47076 2cy7A expands to /projects/compbio/data/pdb/2cy7.pdb.gz 2cy7A:# 2cy7A.457.304 read from T0547.t2k.many.frag # adding 2cy7A to template set # found chain 2cy7A in template set T0547 457 :EQNFPIMPL 2cy7A 302 :QHPPCRMSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=47077 # 1ql0A.457.101 read from T0547.t2k.many.frag # found chain 1ql0A in training set Warning: unaligning (T0547)P461 (1ql0A)N110 because G (3-10) conformation "forbidden" or filtered. T0547 457 :EQNF 1ql0A 106 :NYLS T0547 462 :IMPL 1ql0A 111 :ITPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=47079 # 1xk5A.457.187 read from T0547.t2k.many.frag # found chain 1xk5A in template set Warning: unaligning (T0547)F460 (1xk5A)G287 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1xk5A)V288 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQN 1xk5A 284 :DVL T0547 462 :IMPL 1xk5A 289 :AVPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47081 # 1p7tA.457.464 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 457 :EQNFPIMPL 1p7tA 465 :MEAGPMLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=47082 # 1xmxA.457.356 read from T0547.t2k.many.frag # found chain 1xmxA in template set T0547 457 :EQNFPIMPL 1xmxA 355 :DLGLALIGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=47083 # 1sg4A.457.178 read from T0547.t2k.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)N459 (1sg4A)V181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQ 1sg4A 179 :GI T0547 460 :F 1sg4A 182 :D T0547 462 :IMPL 1sg4A 184 :VVPE Number of specific fragments extracted= 3 number of extra gaps= 2 total=47086 # 1t6eX.458.189 read from T0547.t2k.many.frag # found chain 1t6eX in training set T0547 458 :QNFPIMPLD 1t6eX 190 :QSMPYTPLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=47087 # 1xgkA.458.271 read from T0547.t2k.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)N459 (1xgkA)K273 because L (left) conformation "forbidden" or filtered. T0547 458 :Q 1xgkA 272 :H T0547 460 :FPIMPLD 1xgkA 274 :APYFPLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=47089 # 4bcl.458.237 read from T0547.t2k.many.frag # found chain 4bcl in template set T0547 458 :QNFPIMPLD 4bcl 238 :RWTELFPVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=47090 # 1qg8A.458.198 read from T0547.t2k.many.frag # found chain 1qg8A in training set Warning: unaligning (T0547)M463 (1qg8A)Y205 because P (beta_P) conformation "forbidden" or filtered. T0547 458 :QNFPI 1qg8A 200 :HFYPF T0547 464 :PLD 1qg8A 206 :PLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=47092 # 2a6aA.458.95 read from T0547.t2k.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)N459 (2a6aA)D85 because L (left) conformation "forbidden" or filtered. T0547 458 :Q 2a6aA 84 :Y T0547 460 :FPIMPLD 2a6aA 86 :IPVAPLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=47094 # 2cbiA.458.374 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 458 :QNFPIMPLD 2cbiA 405 :GKLALGPMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=47095 # 1hx0A.458.281 read from T0547.t2k.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 458 :QNF 1hx0A 282 :EGW T0547 462 :IMPLD 1hx0A 286 :FMPSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=47097 # 1umgA.458.266 read from T0547.t2k.many.frag # found chain 1umgA in training set Warning: unaligning (T0547)Q458 (1umgA)H269 because Y (epsilon') conformation "forbidden" or filtered. T0547 459 :NFPIMPLD 1umgA 270 :YGPLMPVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=47098 # 1txvA.458.355 read from T0547.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0547)P461 (1txvA)A359 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNF 1txvA 356 :FGS T0547 462 :IMPLD 1txvA 360 :IAPLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=47100 # 1br9.458.99 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)N459 (1br9)C101 because G (3-10) conformation "forbidden" or filtered. T0547 458 :Q 1br9 100 :L T0547 460 :FPIMPLD 1br9 102 :DFIVPWD Number of specific fragments extracted= 2 number of extra gaps= 1 total=47102 # 1sx5A.458.116 read from T0547.t2k.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)P461 (1sx5A)I121 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNF 1sx5A 118 :TKN T0547 462 :IMPLD 1sx5A 122 :VYPFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=47104 # 1m65A.458.231 read from T0547.t2k.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)P461 (1m65A)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 458 :QNF 1m65A 232 :ESR T0547 462 :IMPLD 1m65A 236 :MAPIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47106 # 1si2A.458.111 read from T0547.t2k.many.frag # found chain 1si2A in template set Warning: unaligning (T0547)F460 (1si2A)H334 because L (left) conformation "forbidden" or filtered. T0547 458 :QN 1si2A 332 :QK T0547 461 :PIMPLD 1si2A 335 :TYLPLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=47108 # 1zvdA.458.307 read from T0547.t2k.many.frag # found chain 1zvdA in template set Warning: unaligning (T0547)N459 (1zvdA)G677 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1zvdA)S679 because G (3-10) conformation "forbidden" or filtered. T0547 458 :Q 1zvdA 676 :T T0547 460 :F 1zvdA 678 :S T0547 462 :IMPLD 1zvdA 680 :RVPLQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=47111 # 1ryoA.458.227 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)N459 (1ryoA)D229 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F460 (1ryoA)N230 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1ryoA)T231 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :Q 1ryoA 228 :L T0547 462 :IMPLD 1ryoA 232 :RKPVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=47113 # 1jihA.458.378 read from T0547.t2k.many.frag # found chain 1jihA in template set T0547 458 :QNFPIMPLD 1jihA 379 :RGRYGLPLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=47114 # 2a6zA.458.140 read from T0547.t2k.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)P461 (2a6zA)A149 because Y (epsilon') conformation "forbidden" or filtered. T0547 458 :QNF 2a6zA 146 :QSF T0547 462 :IMPLD 2a6zA 150 :SCLMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=47116 # 2cy7A.458.305 read from T0547.t2k.many.frag # found chain 2cy7A in template set T0547 458 :QNFPIMPLD 2cy7A 303 :HPPCRMSIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=47117 # 1g8kA.458.637 read from T0547.t2k.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)F460 (1g8kA)G640 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1g8kA)V641 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QN 1g8kA 638 :NN T0547 462 :IMPLD 1g8kA 642 :QLPVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47119 # 1vlyA.458.53 read from T0547.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)P461 (1vlyA)V45 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNF 1vlyA 42 :QGQ T0547 462 :IMPLD 1vlyA 46 :TADVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=47121 # 1w96A.458.392 read from T0547.t2k.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)P461 (1w96A)M408 because G (3-10) conformation "forbidden" or filtered. T0547 458 :QNF 1w96A 405 :QIA T0547 462 :IMPLD 1w96A 409 :GIPMH Number of specific fragments extracted= 2 number of extra gaps= 1 total=47123 # 1tr9A.458.284 read from T0547.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)P464 (1tr9A)E290 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNFPIM 1tr9A 284 :DNLPIM T0547 465 :LD 1tr9A 291 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=47125 # 1txoA.458.154 read from T0547.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0547)P464 (1txoA)R164 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L465 (1txoA)A165 because Y (epsilon') conformation "forbidden" or filtered. T0547 458 :QNFPIM 1txoA 158 :QRSLIM T0547 466 :D 1txoA 166 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=47127 # 1d4oA.458.122 read from T0547.t2k.many.frag # found chain 1d4oA in training set T0547 458 :QNFPIMPLD 1d4oA 123 :AGMPVLEVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=47128 # 1p7tA.458.465 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 458 :QNFPIMPLD 1p7tA 466 :EAGPMLRKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=47129 # 1a8d.458.262 read from T0547.t2k.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)N459 (1a8d)E264 because P (beta_P) conformation "forbidden" or filtered. T0547 458 :Q 1a8d 263 :T T0547 460 :FPIMPLD 1a8d 265 :YYLIPVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47131 # 1no7A.458.502 read from T0547.t2k.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P461 (1no7A)Y956 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNF 1no7A 953 :DYF T0547 462 :IMPLD 1no7A 957 :PLPVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=47133 # 2c1lA.458.235 read from T0547.t2k.many.frag # found chain 2c1lA in template set Warning: unaligning (T0547)P464 (2c1lA)T242 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D466 (2c1lA)R244 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNFPIM 2c1lA 236 :DFFPPL T0547 465 :L 2c1lA 243 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=47135 # 1gvhA.458.312 read from T0547.t2k.many.frag # found chain 1gvhA in template set Warning: unaligning (T0547)P464 (1gvhA)T319 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNFPIM 1gvhA 313 :QSLPRF T0547 465 :LD 1gvhA 320 :AH Number of specific fragments extracted= 2 number of extra gaps= 1 total=47137 # 1ckmA.458.259 read from T0547.t2k.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)F460 (1ckmA)R262 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1ckmA)K263 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QN 1ckmA 260 :NL T0547 462 :IMPLD 1ckmA 264 :NVPVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=47139 # 1xgkA.459.272 read from T0547.t2k.many.frag # found chain 1xgkA in training set T0547 459 :NFPIMPLDR 1xgkA 273 :KAPYFPLPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=47140 # 4bcl.459.238 read from T0547.t2k.many.frag # found chain 4bcl in template set T0547 459 :NFPIMPLDR 4bcl 239 :WTELFPVEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=47141 # 1t6eX.459.190 read from T0547.t2k.many.frag # found chain 1t6eX in training set T0547 459 :NFPIMPLDR 1t6eX 191 :SMPYTPLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=47142 # 2a6aA.459.96 read from T0547.t2k.many.frag # found chain 2a6aA in template set T0547 459 :NFPIMPLDR 2a6aA 85 :DIPVAPLNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=47143 # 2cbiA.459.375 read from T0547.t2k.many.frag # found chain 2cbiA in template set Warning: unaligning (T0547)R467 (2cbiA)G414 because T (delta_L) conformation "forbidden" or filtered. T0547 459 :NFPIMPLD 2cbiA 406 :KLALGPMH Number of specific fragments extracted= 1 number of extra gaps= 1 total=47144 # 1txvA.459.356 read from T0547.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0547)N459 (1txvA)G357 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1txvA)A359 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1txvA 358 :S T0547 462 :IMPLDR 1txvA 360 :IAPLGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=47146 # 1qg8A.459.199 read from T0547.t2k.many.frag # found chain 1qg8A in training set T0547 459 :NFPIMPLDR 1qg8A 201 :FYPFYPLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=47147 # 1hx0A.459.282 read from T0547.t2k.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 459 :NF 1hx0A 283 :GW T0547 462 :IMPLDR 1hx0A 286 :FMPSDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=47149 # 1ryoA.459.228 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)F460 (1ryoA)N230 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1ryoA)T231 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :N 1ryoA 229 :D T0547 462 :IMPLDR 1ryoA 232 :RKPVDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=47151 # 1br9.459.100 read from T0547.t2k.many.frag # found chain 1br9 in template set T0547 459 :NFPIMPLDR 1br9 101 :CDFIVPWDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=47152 # 1umgA.459.267 read from T0547.t2k.many.frag # found chain 1umgA in training set T0547 459 :NFPIMPLDR 1umgA 270 :YGPLMPVSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=47153 # 1m65A.459.232 read from T0547.t2k.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)P461 (1m65A)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 459 :NF 1m65A 233 :SR T0547 462 :IMPLDR 1m65A 236 :MAPIAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=47155 # 1sx5A.459.117 read from T0547.t2k.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)F460 (1sx5A)N120 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1sx5A)I121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1sx5A)Q127 because G (3-10) conformation "forbidden" or filtered. T0547 459 :N 1sx5A 119 :K T0547 462 :IMPLD 1sx5A 122 :VYPFD Number of specific fragments extracted= 2 number of extra gaps= 2 total=47157 # 1w96A.459.393 read from T0547.t2k.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)P461 (1w96A)M408 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (1w96A)G409 because T (delta_L) conformation "forbidden" or filtered. T0547 459 :NF 1w96A 406 :IA T0547 463 :MPLDR 1w96A 410 :IPMHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=47159 # 1si2A.459.112 read from T0547.t2k.many.frag # found chain 1si2A in template set Warning: unaligning (T0547)F460 (1si2A)H334 because L (left) conformation "forbidden" or filtered. T0547 459 :N 1si2A 333 :K T0547 461 :PIMPLDR 1si2A 335 :TYLPLEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47161 1vqoA expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoA:# 1vqoA.459.90 read from T0547.t2k.many.frag # adding 1vqoA to template set # found chain 1vqoA in template set Warning: unaligning (T0547)M463 (1vqoA)L94 because Y (epsilon') conformation "forbidden" or filtered. T0547 459 :NFPI 1vqoA 90 :PGNT T0547 464 :PLDR 1vqoA 95 :PLAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=47163 # 1zvdA.459.308 read from T0547.t2k.many.frag # found chain 1zvdA in template set Warning: unaligning (T0547)P461 (1zvdA)S679 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1zvdA)G685 because S (epsilon) conformation "forbidden" or filtered. T0547 459 :NF 1zvdA 677 :GS T0547 462 :IMPLD 1zvdA 680 :RVPLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=47165 # 1d5tA.459.318 read from T0547.t2k.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)N459 (1d5tA)C317 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1d5tA)I319 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1d5tA 318 :Q T0547 462 :IMPLDR 1d5tA 320 :IIPQNQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=47167 # 1a8d.459.263 read from T0547.t2k.many.frag # found chain 1a8d in training set T0547 459 :NFPIMPLDR 1a8d 264 :EYYLIPVAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=47168 # 2cy7A.459.306 read from T0547.t2k.many.frag # found chain 2cy7A in template set T0547 459 :NFPIMPLDR 2cy7A 304 :PPCRMSIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=47169 # 1p7tA.459.466 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 459 :NFPIMPLDR 1p7tA 467 :AGPMLRKNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=47170 # 1jihA.459.379 read from T0547.t2k.many.frag # found chain 1jihA in template set T0547 459 :NFPIMPLDR 1jihA 380 :GRYGLPLSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=47171 # 1sg4A.459.180 read from T0547.t2k.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)N459 (1sg4A)V181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1sg4A)Q189 because G (3-10) conformation "forbidden" or filtered. T0547 460 :F 1sg4A 182 :D T0547 462 :IMPLD 1sg4A 184 :VVPEE Number of specific fragments extracted= 2 number of extra gaps= 3 total=47173 # 1rqpA.459.168 read from T0547.t2k.many.frag # found chain 1rqpA in training set Warning: unaligning (T0547)P461 (1rqpA)A171 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (1rqpA)G172 because T (delta_L) conformation "forbidden" or filtered. T0547 459 :NF 1rqpA 169 :LA T0547 463 :MPLDR 1rqpA 173 :FPLSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=47175 # 1tr9A.459.285 read from T0547.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)P464 (1tr9A)E290 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NFPIM 1tr9A 285 :NLPIM T0547 465 :LDR 1tr9A 291 :VPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=47177 # 1d4oA.459.123 read from T0547.t2k.many.frag # found chain 1d4oA in training set Warning: unaligning (T0547)N459 (1d4oA)G124 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1d4oA)L128 because P (beta_P) conformation "forbidden" or filtered. T0547 460 :FPI 1d4oA 125 :MPV T0547 464 :PLDR 1d4oA 129 :EVWK Number of specific fragments extracted= 2 number of extra gaps= 2 total=47179 # 1vlyA.459.54 read from T0547.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)P461 (1vlyA)V45 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NF 1vlyA 43 :GQ T0547 462 :IMPLDR 1vlyA 46 :TADVSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=47181 1gpr expands to /projects/compbio/data/pdb/1gpr.pdb.gz 1gpr:Warning: there is no chain 1gpr will retry with 1gprA # 1gpr.459.19 read from T0547.t2k.many.frag # adding 1gpr to template set # found chain 1gpr in template set Warning: unaligning (T0547)P461 (1gpr)E22 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NF 1gpr 20 :TG T0547 462 :IMPLDR 1gpr 23 :IHPITD Number of specific fragments extracted= 2 number of extra gaps= 1 total=47183 # 1no7A.459.503 read from T0547.t2k.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P461 (1no7A)Y956 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NF 1no7A 954 :YF T0547 462 :IMPLDR 1no7A 957 :PLPVHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47185 # 1qs1A.459.410 read from T0547.t2k.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)M463 (1qs1A)A415 because Y (epsilon') conformation "forbidden" or filtered. T0547 459 :NFPI 1qs1A 411 :GSTG T0547 464 :PLDR 1qs1A 416 :YLSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47187 # 1xgkA.460.273 read from T0547.t2k.many.frag # found chain 1xgkA in training set T0547 460 :FPIMPLDRL 1xgkA 274 :APYFPLPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=47188 # 4bcl.460.239 read from T0547.t2k.many.frag # found chain 4bcl in template set T0547 460 :FPIMPLDRL 4bcl 240 :TELFPVEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47189 # 1t6eX.460.191 read from T0547.t2k.many.frag # found chain 1t6eX in training set T0547 460 :FPIMPLDRL 1t6eX 192 :MPYTPLVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=47190 # 1ryoA.460.229 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)F460 (1ryoA)N230 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1ryoA)T231 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRL 1ryoA 232 :RKPVDEY Number of specific fragments extracted= 1 number of extra gaps= 1 total=47191 # 2cbiA.460.376 read from T0547.t2k.many.frag # found chain 2cbiA in template set Warning: unaligning (T0547)R467 (2cbiA)G414 because T (delta_L) conformation "forbidden" or filtered. T0547 460 :FPIMPLD 2cbiA 407 :LALGPMH T0547 468 :L 2cbiA 415 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=47193 # 1txvA.460.357 read from T0547.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0547)P461 (1txvA)A359 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1txvA 358 :S T0547 462 :IMPLDRL 1txvA 360 :IAPLGDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=47195 # 2a6aA.460.97 read from T0547.t2k.many.frag # found chain 2a6aA in template set T0547 460 :FPIMPLDRL 2a6aA 86 :IPVAPLNSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=47196 # 1hx0A.460.283 read from T0547.t2k.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 460 :F 1hx0A 284 :W T0547 462 :IMPLDRL 1hx0A 286 :FMPSDRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47198 # 1d5tA.460.319 read from T0547.t2k.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)P461 (1d5tA)I319 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1d5tA 318 :Q T0547 462 :IMPLDRL 1d5tA 320 :IIPQNQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47200 # 1br9.460.101 read from T0547.t2k.many.frag # found chain 1br9 in template set T0547 460 :FPIMPLDRL 1br9 102 :DFIVPWDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47201 # 1qg8A.460.200 read from T0547.t2k.many.frag # found chain 1qg8A in training set T0547 460 :FPIMPLDRL 1qg8A 202 :YPFYPLDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=47202 # 1umgA.460.268 read from T0547.t2k.many.frag # found chain 1umgA in training set T0547 460 :FPIMPLDRL 1umgA 271 :GPLMPVSQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=47203 # 1m65A.460.233 read from T0547.t2k.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)P461 (1m65A)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 460 :F 1m65A 234 :R T0547 462 :IMPLDRL 1m65A 236 :MAPIAEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=47205 # 1ta0A.460.111 read from T0547.t2k.many.frag # found chain 1ta0A in template set T0547 460 :FPIMPLDRL 1ta0A 187 :NYVKDLSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47206 # 1qs1A.460.411 read from T0547.t2k.many.frag # found chain 1qs1A in training set T0547 460 :FPIMPLDRL 1qs1A 412 :STGAYLSAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=47207 # 1vqoA.460.91 read from T0547.t2k.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)F460 (1vqoA)G91 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1vqoA)L94 because Y (epsilon') conformation "forbidden" or filtered. T0547 461 :PI 1vqoA 92 :NT T0547 464 :PLDRL 1vqoA 95 :PLAEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=47209 # 1sx5A.460.118 read from T0547.t2k.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)F460 (1sx5A)N120 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1sx5A)I121 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRL 1sx5A 122 :VYPFDQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=47210 # 1w96A.460.394 read from T0547.t2k.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)P461 (1w96A)M408 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (1w96A)G409 because T (delta_L) conformation "forbidden" or filtered. T0547 460 :F 1w96A 407 :A T0547 463 :MPLDRL 1w96A 410 :IPMHRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=47212 # 1p7tA.460.467 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 460 :FPIMPLDRL 1p7tA 468 :GPMLRKNQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=47213 # 1jihA.460.380 read from T0547.t2k.many.frag # found chain 1jihA in template set T0547 460 :FPIMPLDRL 1jihA 381 :RYGLPLSSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=47214 # 1si2A.460.113 read from T0547.t2k.many.frag # found chain 1si2A in template set T0547 460 :FPIMPLDRL 1si2A 334 :HTYLPLEVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=47215 # 1sg4A.460.181 read from T0547.t2k.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1sg4A 182 :D T0547 462 :IMPLDRL 1sg4A 184 :VVPEEQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47217 # 1zvdA.460.309 read from T0547.t2k.many.frag # found chain 1zvdA in template set Warning: unaligning (T0547)P461 (1zvdA)S679 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1zvdA)G685 because S (epsilon) conformation "forbidden" or filtered. T0547 460 :F 1zvdA 678 :S T0547 462 :IMPLD 1zvdA 680 :RVPLQ T0547 468 :L 1zvdA 686 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=47220 # 1a8d.460.264 read from T0547.t2k.many.frag # found chain 1a8d in training set T0547 460 :FPIMPLDRL 1a8d 265 :YYLIPVASS Number of specific fragments extracted= 1 number of extra gaps= 0 total=47221 # 1gpr.460.20 read from T0547.t2k.many.frag # found chain 1gpr in template set Warning: unaligning (T0547)P461 (1gpr)E22 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1gpr 21 :G T0547 462 :IMPLDRL 1gpr 23 :IHPITDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47223 # 1efdN.460.188 read from T0547.t2k.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)P461 (1efdN)T220 because Y (epsilon') conformation "forbidden" or filtered. T0547 460 :F 1efdN 219 :S T0547 462 :IMPLDRL 1efdN 221 :AVSIDRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=47225 # 1vlyA.460.55 read from T0547.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)P461 (1vlyA)V45 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1vlyA 44 :Q T0547 462 :IMPLDRL 1vlyA 46 :TADVSQM Number of specific fragments extracted= 2 number of extra gaps= 1 total=47227 # 1xmxA.460.359 read from T0547.t2k.many.frag # found chain 1xmxA in template set T0547 460 :FPIMPLDRL 1xmxA 358 :LALIGPDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47228 # 1h2wA.460.260 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)P461 (1h2wA)W262 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1h2wA 261 :L T0547 462 :IMPLDRL 1h2wA 263 :YCDLQQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=47230 # 1mgtA.460.135 read from T0547.t2k.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)P461 (1mgtA)I137 because T (delta_L) conformation "forbidden" or filtered. T0547 460 :F 1mgtA 136 :P T0547 462 :IMPLDRL 1mgtA 138 :VVPCHRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47232 # 1xgkA.461.274 read from T0547.t2k.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)D469 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xgkA)P309 T0547 461 :PIMPLDRL 1xgkA 275 :PYFPLPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=47233 # 1ryoA.461.230 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P461 (1ryoA)T231 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1ryoA 232 :RKPVDEYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=47234 # 4bcl.461.240 read from T0547.t2k.many.frag # found chain 4bcl in template set T0547 461 :PIMPLDRLD 4bcl 241 :ELFPVEQLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=47235 # 1t6eX.461.192 read from T0547.t2k.many.frag # found chain 1t6eX in training set T0547 461 :PIMPLDRLD 1t6eX 193 :PYTPLVTKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=47236 # 1txvA.461.358 read from T0547.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0547)P461 (1txvA)A359 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1txvA 360 :IAPLGDLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=47237 # 2cbiA.461.377 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 461 :PIMPLDRLD 2cbiA 408 :ALGPMHGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=47238 # 2a6aA.461.98 read from T0547.t2k.many.frag # found chain 2a6aA in template set T0547 461 :PIMPLDRLD 2a6aA 87 :PVAPLNSFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=47239 # 1d5tA.461.320 read from T0547.t2k.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)P461 (1d5tA)I319 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1d5tA)N327 because L (left) conformation "forbidden" or filtered. T0547 462 :IMPLDRL 1d5tA 320 :IIPQNQV Number of specific fragments extracted= 1 number of extra gaps= 2 total=47240 # 1ta0A.461.112 read from T0547.t2k.many.frag # found chain 1ta0A in template set T0547 461 :PIMPLDRLD 1ta0A 188 :YVKDLSRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=47241 1quqB expands to /projects/compbio/data/pdb/1quq.pdb.gz 1quqB:# 1quqB.461.9 read from T0547.t2k.many.frag # adding 1quqB to template set # found chain 1quqB in template set Warning: unaligning (T0547)M463 (1quqB)I12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1quqB)N13 because E (beta_S) conformation "forbidden" or filtered. T0547 461 :PI 1quqB 10 :SR T0547 465 :LDRLD 1quqB 14 :AGMLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47243 # 1efdN.461.189 read from T0547.t2k.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)P461 (1efdN)T220 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1efdN 221 :AVSIDRLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=47244 # 1h2wA.461.261 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)P461 (1h2wA)W262 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1h2wA 263 :YCDLQQES Number of specific fragments extracted= 1 number of extra gaps= 1 total=47245 # 1qs1A.461.412 read from T0547.t2k.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)I462 (1qs1A)G414 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1qs1A)A415 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1qs1A)G421 because S (epsilon) conformation "forbidden" or filtered. T0547 461 :P 1qs1A 413 :T T0547 464 :PLDRL 1qs1A 416 :YLSAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=47247 # 1m65A.461.234 read from T0547.t2k.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)P461 (1m65A)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1m65A 236 :MAPIAEFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=47248 # 1br9.461.102 read from T0547.t2k.many.frag # found chain 1br9 in template set T0547 461 :PIMPLDRLD 1br9 103 :FIVPWDTLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=47249 # 1vqoA.461.92 read from T0547.t2k.many.frag # found chain 1vqoA in template set T0547 461 :PIMPLDRLD 1vqoA 92 :NTLPLAEIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=47250 1n12A expands to /projects/compbio/data/pdb/1n12.pdb.gz 1n12A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 268, because occupancy 0.500 <= existing 0.500 in 1n12A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 270, because occupancy 0.500 <= existing 0.500 in 1n12A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 272, because occupancy 0.500 <= existing 0.500 in 1n12A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 274, because occupancy 0.500 <= existing 0.500 in 1n12A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 276, because occupancy 0.500 <= existing 0.500 in 1n12A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 278, because occupancy 0.500 <= existing 0.500 in 1n12A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 280, because occupancy 0.500 <= existing 0.500 in 1n12A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 282, because occupancy 0.500 <= existing 0.500 in 1n12A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 608, because occupancy 0.500 <= existing 0.500 in 1n12A Skipped atom 610, because occupancy 0.500 <= existing 0.500 in 1n12A Skipped atom 612, because occupancy 0.500 <= existing 0.500 in 1n12A Skipped atom 614, because occupancy 0.500 <= existing 0.500 in 1n12A Skipped atom 616, because occupancy 0.500 <= existing 0.500 in 1n12A Skipped atom 618, because occupancy 0.500 <= existing 0.500 in 1n12A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1n12A.461.13 read from T0547.t2k.many.frag # adding 1n12A to template set # found chain 1n12A in template set T0547 461 :PIMPLDRLD 1n12A 25 :QDVEIQTLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=47251 # 1p7tA.461.468 read from T0547.t2k.many.frag # found chain 1p7tA in template set Warning: unaligning (T0547)R467 (1p7tA)Q475 because G (3-10) conformation "forbidden" or filtered. T0547 461 :PIMPLD 1p7tA 469 :PMLRKN T0547 468 :LD 1p7tA 476 :MK Number of specific fragments extracted= 2 number of extra gaps= 1 total=47253 # 1mkfA.461.155 read from T0547.t2k.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)P461 (1mkfA)I156 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1mkfA)D164 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :IMPLDRL 1mkfA 157 :DIPKSYV Number of specific fragments extracted= 1 number of extra gaps= 2 total=47254 # 1hx0A.461.284 read from T0547.t2k.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1hx0A 286 :FMPSDRAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=47255 # 1jihA.461.381 read from T0547.t2k.many.frag # found chain 1jihA in template set T0547 461 :PIMPLDRLD 1jihA 382 :YGLPLSSRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=47256 # 1svsA.461.221 read from T0547.t2k.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)R467 (1svsA)D229 because G (3-10) conformation "forbidden" or filtered. T0547 461 :PIMPLD 1svsA 223 :FCVALS T0547 468 :LD 1svsA 230 :YD Number of specific fragments extracted= 2 number of extra gaps= 1 total=47258 # 1w96A.461.395 read from T0547.t2k.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)P461 (1w96A)M408 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (1w96A)G409 because T (delta_L) conformation "forbidden" or filtered. T0547 463 :MPLDRLD 1w96A 410 :IPMHRIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=47259 # 1f8vA.461.208 read from T0547.t2k.many.frag # found chain 1f8vA in template set Warning: unaligning (T0547)P461 (1f8vA)R215 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1f8vA)G218 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1f8vA)R223 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :IM 1f8vA 216 :IN T0547 465 :LDRL 1f8vA 219 :LRGI Number of specific fragments extracted= 2 number of extra gaps= 3 total=47261 # 1umgA.461.269 read from T0547.t2k.many.frag # found chain 1umgA in training set T0547 461 :PIMPLDRLD 1umgA 272 :PLMPVSQRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=47262 # 1zvdA.461.310 read from T0547.t2k.many.frag # found chain 1zvdA in template set Warning: unaligning (T0547)P461 (1zvdA)S679 because G (3-10) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1zvdA 680 :RVPLQGFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=47263 # 1si2A.461.114 read from T0547.t2k.many.frag # found chain 1si2A in template set T0547 461 :PIMPLDRLD 1si2A 335 :TYLPLEVCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=47264 # 1sx5A.461.119 read from T0547.t2k.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)P461 (1sx5A)I121 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1sx5A 122 :VYPFDQYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=47265 # 1zhaA.461.235 read from T0547.t2k.many.frag # found chain 1zhaA in template set Warning: unaligning (T0547)P461 (1zhaA)T1236 because G (3-10) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1zhaA 1237 :QLPLSQLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=47266 # 1sg4A.461.182 read from T0547.t2k.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1sg4A 184 :VVPEEQVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=47267 # 1txvA.462.359 read from T0547.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0547)E470 (1txvA)R368 because L (left) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1txvA 360 :IAPLGDLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=47268 # 1ryoA.462.231 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 462 :IMPLDRLDE 1ryoA 232 :RKPVDEYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=47269 # 1xgkA.462.275 read from T0547.t2k.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)D469 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xgkA)P309 T0547 462 :IMPLDRL 1xgkA 276 :YFPLPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=47270 # 1t6eX.462.193 read from T0547.t2k.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)D466 (1t6eX)V198 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1t6eX)G201 because P (beta_P) conformation "forbidden" or filtered. T0547 462 :IMPL 1t6eX 194 :YTPL T0547 467 :RL 1t6eX 199 :TK T0547 470 :E 1t6eX 202 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=47273 # 4bcl.462.241 read from T0547.t2k.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)R467 (4bcl)Q247 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :IMPLD 4bcl 242 :LFPVE T0547 468 :LD 4bcl 248 :LN Number of specific fragments extracted= 2 number of extra gaps= 2 total=47275 # 2cbiA.462.378 read from T0547.t2k.many.frag # found chain 2cbiA in template set Warning: unaligning (T0547)D466 (2cbiA)H413 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPL 2cbiA 409 :LGPM T0547 467 :RLDE 2cbiA 414 :GLDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=47277 # 1quqB.462.10 read from T0547.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)P464 (1quqB)N13 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IM 1quqB 11 :RI T0547 465 :LDRLDE 1quqB 14 :AGMLAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=47279 # 1h2wA.462.262 read from T0547.t2k.many.frag # found chain 1h2wA in training set T0547 462 :IMPLDRLDE 1h2wA 263 :YCDLQQESN Number of specific fragments extracted= 1 number of extra gaps= 0 total=47280 # 1ta0A.462.113 read from T0547.t2k.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)E470 (1ta0A)R197 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1ta0A 189 :VKDLSRLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=47281 # 2a6aA.462.99 read from T0547.t2k.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)D466 (2a6aA)N92 because P (beta_P) conformation "forbidden" or filtered. T0547 462 :IMPL 2a6aA 88 :VAPL T0547 467 :RLDE 2a6aA 93 :SFEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=47283 # 1efdN.462.190 read from T0547.t2k.many.frag # found chain 1efdN in template set T0547 462 :IMPLDRLDE 1efdN 221 :AVSIDRLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=47284 # 1y4wA.462.67 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)R467 (1y4wA)G92 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1y4wA)G94 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1y4wA)S95 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :IMPLD 1y4wA 87 :ALLAR T0547 468 :L 1y4wA 93 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=47286 # 1n12A.462.14 read from T0547.t2k.many.frag # found chain 1n12A in template set T0547 462 :IMPLDRLDE 1n12A 26 :DVEIQTLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=47287 # 1d5tA.462.321 read from T0547.t2k.many.frag # found chain 1d5tA in training set T0547 462 :IMPLDRLDE 1d5tA 320 :IIPQNQVNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=47288 # 1qs1A.462.413 read from T0547.t2k.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)M463 (1qs1A)A415 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1qs1A)G421 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1qs1A)G422 because S (epsilon) conformation "forbidden" or filtered. T0547 462 :I 1qs1A 414 :G T0547 464 :PLDRL 1qs1A 416 :YLSAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=47290 # 1zhaA.462.236 read from T0547.t2k.many.frag # found chain 1zhaA in template set T0547 462 :IMPLDRLDE 1zhaA 1237 :QLPLSQLEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=47291 # 1vqoA.462.93 read from T0547.t2k.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)E470 (1vqoA)E101 because P (beta_P) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1vqoA 93 :TLPLAEIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=47292 1ikoP expands to /projects/compbio/data/pdb/1iko.pdb.gz 1ikoP:# 1ikoP.462.71 read from T0547.t2k.many.frag # adding 1ikoP to template set # found chain 1ikoP in template set Warning: unaligning (T0547)P464 (1ikoP)N103 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :IM 1ikoP 101 :LL T0547 465 :LDRLD 1ikoP 104 :CARPD Number of specific fragments extracted= 2 number of extra gaps= 2 total=47294 # 1ckmA.462.263 read from T0547.t2k.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)D466 (1ckmA)G268 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1ckmA)G272 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :IMPL 1ckmA 264 :NVPV T0547 467 :RLD 1ckmA 269 :KLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=47296 # 1g8kA.462.641 read from T0547.t2k.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)R467 (1g8kA)S647 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :IMPLD 1g8kA 642 :QLPVV T0547 468 :LDE 1g8kA 648 :WDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=47298 # 1jihA.462.382 read from T0547.t2k.many.frag # found chain 1jihA in template set T0547 462 :IMPLDRLDE 1jihA 383 :GLPLSSRPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=47299 # 1p7tA.462.469 read from T0547.t2k.many.frag # found chain 1p7tA in template set Warning: unaligning (T0547)R467 (1p7tA)Q475 because G (3-10) conformation "forbidden" or filtered. T0547 462 :IMPLD 1p7tA 470 :MLRKN T0547 468 :LDE 1p7tA 476 :MKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=47301 # 1t82A.462.114 read from T0547.t2k.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :IM 1t82A 105 :DT T0547 465 :LDRLDE 1t82A 108 :LSPLQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=47303 # 1svsA.462.222 read from T0547.t2k.many.frag # found chain 1svsA in training set T0547 462 :IMPLDRLDE 1svsA 224 :CVALSDYDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47304 # 1m65A.462.235 read from T0547.t2k.many.frag # found chain 1m65A in training set T0547 462 :IMPLDRLDE 1m65A 236 :MAPIAEFAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=47305 # 1mkfA.462.156 read from T0547.t2k.many.frag # found chain 1mkfA in template set T0547 462 :IMPLDRLDE 1mkfA 157 :DIPKSYVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=47306 # 1br9.462.103 read from T0547.t2k.many.frag # found chain 1br9 in template set T0547 462 :IMPLDRLDE 1br9 104 :IVPWDTLST Number of specific fragments extracted= 1 number of extra gaps= 0 total=47307 # 1t62A.462.91 read from T0547.t2k.many.frag # found chain 1t62A in template set T0547 462 :IMPLDRLDE 1t62A 1092 :IMPMNKVSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=47308 # 1f8vA.462.209 read from T0547.t2k.many.frag # found chain 1f8vA in template set Warning: unaligning (T0547)P464 (1f8vA)G218 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1f8vA)R223 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :IM 1f8vA 216 :IN T0547 465 :LDRL 1f8vA 219 :LRGI T0547 470 :E 1f8vA 224 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=47311 # 1gp0A.462.18 read from T0547.t2k.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)P464 (1gp0A)D1528 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1gp0A)S1533 because P (beta_P) conformation "forbidden" or filtered. T0547 462 :IM 1gp0A 1526 :LF T0547 465 :LDRL 1gp0A 1529 :LSSL T0547 470 :E 1gp0A 1534 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=47314 # 1txvA.463.360 read from T0547.t2k.many.frag # found chain 1txvA in template set T0547 463 :MPLDRLDEE 1txvA 361 :APLGDLDRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=47315 # 1ryoA.463.232 read from T0547.t2k.many.frag # found chain 1ryoA in training set T0547 463 :MPLDRLDEE 1ryoA 233 :KPVDEYKDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=47316 # 2cbiA.463.379 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 463 :MPLDRLDEE 2cbiA 410 :GPMHGLDKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=47317 # 4bcl.463.242 read from T0547.t2k.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)R467 (4bcl)Q247 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. T0547 463 :MPLD 4bcl 243 :FPVE T0547 468 :LD 4bcl 248 :LN T0547 471 :E 4bcl 251 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=47320 # 1xgkA.463.276 read from T0547.t2k.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)D469 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xgkA)P309 T0547 463 :MPLDRL 1xgkA 277 :FPLPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=47321 # 1quqB.463.11 read from T0547.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)M463 (1quqB)I12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1quqB)N13 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1quqB 14 :AGMLAQF Number of specific fragments extracted= 1 number of extra gaps= 1 total=47322 # 1t6eX.463.194 read from T0547.t2k.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)E470 (1t6eX)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 463 :MPLDRLD 1t6eX 195 :TPLVTKG T0547 471 :E 1t6eX 203 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=47324 # 1y4wA.463.68 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)D466 (1y4wA)R91 because P (beta_P) conformation "forbidden" or filtered. T0547 463 :MPL 1y4wA 88 :LLA T0547 467 :RLDEE 1y4wA 92 :GFGSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=47326 # 1h2wA.463.263 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)E470 (1h2wA)N271 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1h2wA)G272 because S (epsilon) conformation "forbidden" or filtered. T0547 463 :MPLDRLD 1h2wA 264 :CDLQQES Number of specific fragments extracted= 1 number of extra gaps= 1 total=47327 # 1n12A.463.15 read from T0547.t2k.many.frag # found chain 1n12A in template set T0547 463 :MPLDRLDEE 1n12A 27 :VEIQTLSQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=47328 # 1ta0A.463.114 read from T0547.t2k.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)D469 (1ta0A)G196 because T (delta_L) conformation "forbidden" or filtered. T0547 463 :MPLDRL 1ta0A 190 :KDLSRL T0547 470 :EE 1ta0A 197 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=47330 # 1ikoP.463.72 read from T0547.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0547)P464 (1ikoP)N103 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1ikoP)D110 because P (beta_P) conformation "forbidden" or filtered. T0547 463 :M 1ikoP 102 :L T0547 465 :LDRLDE 1ikoP 104 :CARPDQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=47332 # 1vqoA.463.94 read from T0547.t2k.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)M463 (1vqoA)L94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1vqoA)P100 because P (beta_P) conformation "forbidden" or filtered. T0547 464 :PLDRL 1vqoA 95 :PLAEI T0547 470 :EE 1vqoA 101 :EG Number of specific fragments extracted= 2 number of extra gaps= 2 total=47334 # 1qs1A.463.414 read from T0547.t2k.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)M463 (1qs1A)A415 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1qs1A)G422 because S (epsilon) conformation "forbidden" or filtered. T0547 464 :PLDRLD 1qs1A 416 :YLSAIG T0547 471 :E 1qs1A 423 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=47336 # 1t82A.463.115 read from T0547.t2k.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)M463 (1t82A)T106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1t82A)G114 because L (left) conformation "forbidden" or filtered. T0547 465 :LDRLDE 1t82A 108 :LSPLQR Number of specific fragments extracted= 1 number of extra gaps= 2 total=47337 # 1ckmA.463.264 read from T0547.t2k.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)E470 (1ckmA)G272 because Y (epsilon') conformation "forbidden" or filtered. T0547 463 :MPLDRLD 1ckmA 265 :VPVGKLD T0547 471 :E 1ckmA 273 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=47339 # 1obfO.463.219 read from T0547.t2k.many.frag # found chain 1obfO in template set Warning: unaligning (T0547)E470 (1obfO)G227 because T (delta_L) conformation "forbidden" or filtered. T0547 463 :MPLDRLD 1obfO 220 :DVLPELD T0547 471 :E 1obfO 228 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=47341 # 1d5tA.463.322 read from T0547.t2k.many.frag # found chain 1d5tA in training set T0547 463 :MPLDRLDEE 1d5tA 321 :IPQNQVNRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=47342 # 1vlyA.463.58 read from T0547.t2k.many.frag # found chain 1vlyA in training set T0547 463 :MPLDRLDEE 1vlyA 47 :ADVSQMAED Number of specific fragments extracted= 1 number of extra gaps= 0 total=47343 # 1mkfA.463.157 read from T0547.t2k.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)D469 (1mkfA)D164 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1mkfA)V165 because P (beta_P) conformation "forbidden" or filtered. T0547 463 :MPLDRL 1mkfA 158 :IPKSYV T0547 471 :E 1mkfA 166 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=47345 2a5zA expands to /projects/compbio/data/pdb/2a5z.pdb.gz 2a5zA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2a5zA.463.106 read from T0547.t2k.many.frag # adding 2a5zA to template set # found chain 2a5zA in template set T0547 463 :MPLDRLDEE 2a5zA 107 :MLMAIFPKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=47346 # 1m65A.463.236 read from T0547.t2k.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)E471 because last residue in template chain is (1m65A)L245 T0547 463 :MPLDRLDE 1m65A 237 :APIAEFAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=47347 # 1p7tA.463.470 read from T0547.t2k.many.frag # found chain 1p7tA in template set T0547 463 :MPLDRLDEE 1p7tA 471 :LRKNQMKST Number of specific fragments extracted= 1 number of extra gaps= 0 total=47348 # 1efdN.463.191 read from T0547.t2k.many.frag # found chain 1efdN in template set T0547 463 :MPLDRLDEE 1efdN 222 :VSIDRLAAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=47349 # 1f8vA.463.210 read from T0547.t2k.many.frag # found chain 1f8vA in template set Warning: unaligning (T0547)P464 (1f8vA)G218 because T (delta_L) conformation "forbidden" or filtered. T0547 463 :M 1f8vA 217 :N T0547 465 :LDRLDEE 1f8vA 219 :LRGIRPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=47351 # 1t62A.463.92 read from T0547.t2k.many.frag # found chain 1t62A in template set T0547 463 :MPLDRLDEE 1t62A 1093 :MPMNKVSES Number of specific fragments extracted= 1 number of extra gaps= 0 total=47352 # 1g8kA.463.642 read from T0547.t2k.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)P464 (1g8kA)P644 because C (cis) conformation "forbidden" or filtered. T0547 463 :M 1g8kA 643 :L T0547 465 :LDRLDEE 1g8kA 645 :VVSWDES Number of specific fragments extracted= 2 number of extra gaps= 1 total=47354 # 1zhaA.463.237 read from T0547.t2k.many.frag # found chain 1zhaA in template set T0547 463 :MPLDRLDEE 1zhaA 1238 :LPLSQLEGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=47355 # 1jihA.463.383 read from T0547.t2k.many.frag # found chain 1jihA in template set Warning: unaligning (T0547)D466 (1jihA)S387 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1jihA)V391 because P (beta_P) conformation "forbidden" or filtered. T0547 463 :MPL 1jihA 384 :LPL T0547 467 :RLD 1jihA 388 :SRP T0547 471 :E 1jihA 392 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=47358 # 1bc5A.463.193 read from T0547.t2k.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)M463 (1bc5A)S209 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1bc5A)S210 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1bc5A 211 :VNLLEKQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=47359 # 1txvA.464.361 read from T0547.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0547)E470 (1txvA)R368 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1txvA)G370 because T (delta_L) conformation "forbidden" or filtered. T0547 464 :PLDRLD 1txvA 362 :PLGDLD T0547 471 :E 1txvA 369 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=47361 # 4bcl.464.243 read from T0547.t2k.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)R467 (4bcl)Q247 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (4bcl)A252 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLD 4bcl 244 :PVE T0547 468 :LD 4bcl 248 :LN T0547 471 :E 4bcl 251 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=47364 # 1quqB.464.12 read from T0547.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)P464 (1quqB)N13 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 1quqB 14 :AGMLAQFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=47365 # 2cbiA.464.380 read from T0547.t2k.many.frag # found chain 2cbiA in template set Warning: unaligning (T0547)D466 (2cbiA)H413 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PL 2cbiA 411 :PM T0547 467 :RLDEEP 2cbiA 414 :GLDKGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=47367 # 1y4wA.464.69 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)E470 (1y4wA)S95 because Y (epsilon') conformation "forbidden" or filtered. T0547 464 :PLDRLD 1y4wA 89 :LARGFG T0547 471 :EP 1y4wA 96 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47369 # 1ryoA.464.233 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRLDEE 1ryoA 234 :PVDEYKDC Number of specific fragments extracted= 1 number of extra gaps= 1 total=47370 # 1h2wA.464.264 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)R467 (1h2wA)Q268 because G (3-10) conformation "forbidden" or filtered. T0547 464 :PLD 1h2wA 265 :DLQ T0547 468 :LDEEP 1h2wA 269 :ESNGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=47372 # 1ta0A.464.115 read from T0547.t2k.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)D469 (1ta0A)G196 because T (delta_L) conformation "forbidden" or filtered. T0547 464 :PLDRL 1ta0A 191 :DLSRL T0547 470 :EEP 1ta0A 197 :RDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=47374 # 1xgkA.464.277 read from T0547.t2k.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)D469 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xgkA)P309 T0547 464 :PLDRL 1xgkA 278 :PLPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=47375 # 1n12A.464.16 read from T0547.t2k.many.frag # found chain 1n12A in template set T0547 464 :PLDRLDEEP 1n12A 28 :EIQTLSQNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=47376 # 1t6eX.464.195 read from T0547.t2k.many.frag # found chain 1t6eX in training set T0547 464 :PLDRLDEEP 1t6eX 196 :PLVTKGGSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=47377 # 1ikoP.464.73 read from T0547.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0547)P464 (1ikoP)N103 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ikoP)V111 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1ikoP 104 :CARPDQD Number of specific fragments extracted= 1 number of extra gaps= 2 total=47378 # 1e9rA.464.268 read from T0547.t2k.many.frag # found chain 1e9rA in template set T0547 464 :PLDRLDEEP 1e9rA 339 :SILSLPEEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=47379 # 1qs1A.464.415 read from T0547.t2k.many.frag # found chain 1qs1A in training set T0547 464 :PLDRLDEEP 1qs1A 416 :YLSAIGGFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=47380 # 1t82A.464.116 read from T0547.t2k.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1t82A)G114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDE 1t82A 108 :LSPLQR Number of specific fragments extracted= 1 number of extra gaps= 2 total=47381 # 1mkfA.464.158 read from T0547.t2k.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)E471 (1mkfA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 464 :PLDRLDE 1mkfA 159 :PKSYVDV T0547 472 :P 1mkfA 167 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=47383 # 1obfO.464.220 read from T0547.t2k.many.frag # found chain 1obfO in template set Warning: unaligning (T0547)E470 (1obfO)G227 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1obfO)L229 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRLD 1obfO 221 :VLPELD T0547 471 :E 1obfO 228 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=47385 # 1d5tA.464.323 read from T0547.t2k.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)D469 (1d5tA)N327 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1d5tA)S330 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRL 1d5tA 322 :PQNQV T0547 470 :EE 1d5tA 328 :RK Number of specific fragments extracted= 2 number of extra gaps= 2 total=47387 # 2a5zA.464.107 read from T0547.t2k.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)D469 (2a5zA)P113 because P (beta_P) conformation "forbidden" or filtered. T0547 464 :PLDRL 2a5zA 108 :LMAIF T0547 470 :EEP 2a5zA 114 :KES Number of specific fragments extracted= 2 number of extra gaps= 1 total=47389 # 1vp6A.464.43 read from T0547.t2k.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)E470 (1vp6A)E267 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1vp6A)P268 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRLD 1vp6A 261 :VICRIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=47390 # 2pth.464.118 read from T0547.t2k.many.frag # found chain 2pth in training set Warning: unaligning (T0547)D469 (2pth)G124 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (2pth)N125 because L (left) conformation "forbidden" or filtered. T0547 464 :PLDRL 2pth 119 :IISKL T0547 471 :EP 2pth 126 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=47392 # 1vqoA.464.95 read from T0547.t2k.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)E471 (1vqoA)G102 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vqoA)V103 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRLDE 1vqoA 95 :PLAEIPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=47393 # 1f8vA.464.211 read from T0547.t2k.many.frag # found chain 1f8vA in template set Warning: unaligning (T0547)P464 (1f8vA)G218 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1f8vA)R223 because Y (epsilon') conformation "forbidden" or filtered. T0547 465 :LDRL 1f8vA 219 :LRGI T0547 470 :EEP 1f8vA 224 :PLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=47395 # 1ckmA.464.265 read from T0547.t2k.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)E470 (1ckmA)G272 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ckmA)Y274 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRLD 1ckmA 266 :PVGKLD T0547 471 :E 1ckmA 273 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=47397 # 1gweA.464.81 read from T0547.t2k.many.frag # found chain 1gweA in training set Warning: unaligning (T0547)P464 (1gweA)K82 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1gweA)P88 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1gweA)G89 because T (delta_L) conformation "forbidden" or filtered. T0547 465 :LDRLD 1gweA 83 :ALVFQ T0547 472 :P 1gweA 90 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=47399 # 1uasA.464.315 read from T0547.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)E471 (1uasA)A323 because P (beta_P) conformation "forbidden" or filtered. T0547 464 :PLDRLDE 1uasA 316 :HWSNIGL T0547 472 :P 1uasA 324 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=47401 # 1v6sA.464.173 read from T0547.t2k.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)E471 (1v6sA)D181 because L (left) conformation "forbidden" or filtered. T0547 464 :PLDRLDE 1v6sA 174 :ALSRLLK T0547 472 :P 1v6sA 182 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=47403 # 1jayA.464.138 read from T0547.t2k.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)P472 (1jayA)F147 because Y (epsilon') conformation "forbidden" or filtered. T0547 464 :PLDRLDEE 1jayA 139 :RFANLDEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=47404 # 1bc5A.464.194 read from T0547.t2k.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)P464 (1bc5A)S210 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1bc5A)E215 because P (beta_P) conformation "forbidden" or filtered. T0547 465 :LDRL 1bc5A 211 :VNLL T0547 470 :EEP 1bc5A 216 :KQY Number of specific fragments extracted= 2 number of extra gaps= 2 total=47406 # 1vlyA.464.59 read from T0547.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)P472 (1vlyA)Q56 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRLDEE 1vlyA 48 :DVSQMAED Number of specific fragments extracted= 1 number of extra gaps= 1 total=47407 # 1quqB.465.13 read from T0547.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)T473 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 1quqB 14 :AGMLAQFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=47408 # 1txvA.465.362 read from T0547.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0547)P472 (1txvA)G370 because T (delta_L) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1txvA 363 :LGDLDRD T0547 473 :T 1txvA 371 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=47410 # 1y4wA.465.70 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)D466 (1y4wA)R91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1y4wA)G94 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1y4wA)D96 because P (beta_P) conformation "forbidden" or filtered. T0547 465 :L 1y4wA 90 :A T0547 467 :RL 1y4wA 92 :GF T0547 470 :E 1y4wA 95 :S T0547 472 :PT 1y4wA 97 :VT Number of specific fragments extracted= 4 number of extra gaps= 3 total=47414 # 1ryoA.465.234 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1ryoA 235 :VDEYKDC T0547 473 :T 1ryoA 243 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=47416 # 4bcl.465.244 read from T0547.t2k.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)E470 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (4bcl)A252 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLD 4bcl 245 :VEQLN T0547 471 :E 4bcl 251 :P T0547 473 :T 4bcl 253 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=47419 # 2cbiA.465.381 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 465 :LDRLDEEPT 2cbiA 412 :MHGLDKGLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=47420 # 1h2wA.465.265 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)T473 (1h2wA)T274 because G (3-10) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 1h2wA 266 :LQQESNGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=47421 # 2pth.465.119 read from T0547.t2k.many.frag # found chain 2pth in training set Warning: unaligning (T0547)D469 (2pth)G124 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (2pth)N126 because D (zeta) conformation "forbidden" or filtered. T0547 465 :LDRL 2pth 120 :ISKL T0547 470 :E 2pth 125 :N T0547 472 :PT 2pth 127 :PN Number of specific fragments extracted= 3 number of extra gaps= 2 total=47424 # 1xv5A.465.258 read from T0547.t2k.many.frag # found chain 1xv5A in training set T0547 465 :LDRLDEEPT 1xv5A 1258 :IDKMNLAPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=47425 # 1e9rA.465.269 read from T0547.t2k.many.frag # found chain 1e9rA in template set T0547 465 :LDRLDEEPT 1e9rA 340 :ILSLPEEPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=47426 # 1obfO.465.221 read from T0547.t2k.many.frag # found chain 1obfO in template set Warning: unaligning (T0547)E470 (1obfO)G227 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1obfO)L229 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLD 1obfO 222 :LPELD T0547 471 :E 1obfO 228 :K T0547 473 :T 1obfO 230 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=47429 # 1v6sA.465.174 read from T0547.t2k.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)E470 (1v6sA)K180 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLD 1v6sA 175 :LSRLL T0547 471 :EPT 1v6sA 181 :DPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=47431 # 1vp6A.465.44 read from T0547.t2k.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)D469 (1vp6A)G266 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRL 1vp6A 262 :ICRI T0547 470 :EE 1vp6A 267 :EP T0547 473 :T 1vp6A 270 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=47434 # 1ta0A.465.116 read from T0547.t2k.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)D469 (1ta0A)G196 because T (delta_L) conformation "forbidden" or filtered. T0547 465 :LDRL 1ta0A 192 :LSRL T0547 470 :EEPT 1ta0A 197 :RDLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=47436 # 1jayA.465.139 read from T0547.t2k.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)E471 (1jayA)K146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1jayA)F147 because Y (epsilon') conformation "forbidden" or filtered. T0547 465 :LDRLDE 1jayA 140 :FANLDE T0547 473 :T 1jayA 148 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=47438 # 2a5zA.465.108 read from T0547.t2k.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)T473 (2a5zA)E117 because L (left) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 2a5zA 109 :MAIFPKES Number of specific fragments extracted= 1 number of extra gaps= 1 total=47439 # 1efdN.465.193 read from T0547.t2k.many.frag # found chain 1efdN in template set T0547 465 :LDRLDEEPT 1efdN 224 :IDRLAAYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=47440 # 1t82A.465.117 read from T0547.t2k.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1t82A 108 :LSPLQRG T0547 473 :T 1t82A 116 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=47442 # 1uasA.465.316 read from T0547.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)D469 (1uasA)G321 because T (delta_L) conformation "forbidden" or filtered. T0547 465 :LDRL 1uasA 317 :WSNI T0547 470 :EEPT 1uasA 322 :LAGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=47444 # 1n12A.465.17 read from T0547.t2k.many.frag # found chain 1n12A in template set T0547 465 :LDRLDEEPT 1n12A 29 :IQTLSQNGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=47445 # 1ikoP.465.74 read from T0547.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0547)E470 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ikoP)V111 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLD 1ikoP 104 :CARPD T0547 471 :E 1ikoP 110 :D T0547 473 :T 1ikoP 112 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=47448 # 1f8vA.465.212 read from T0547.t2k.many.frag # found chain 1f8vA in template set T0547 465 :LDRLDEEPT 1f8vA 219 :LRGIRPLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=47449 # 1qs1A.465.416 read from T0547.t2k.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)E470 (1qs1A)G422 because S (epsilon) conformation "forbidden" or filtered. T0547 465 :LDRLD 1qs1A 417 :LSAIG T0547 471 :EPT 1qs1A 423 :FAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=47451 # 1d5tA.465.324 read from T0547.t2k.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)D469 (1d5tA)N327 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1d5tA)S330 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRL 1d5tA 323 :QNQV T0547 470 :EE 1d5tA 328 :RK T0547 473 :T 1d5tA 331 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=47454 1hf2A expands to /projects/compbio/data/pdb/1hf2.pdb.gz 1hf2A:# 1hf2A.465.148 read from T0547.t2k.many.frag # adding 1hf2A to template set # found chain 1hf2A in template set Warning: unaligning (T0547)D466 (1hf2A)A150 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :L 1hf2A 149 :R T0547 467 :RLDEEPT 1hf2A 151 :GLNEGGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=47456 # 1mkfA.465.159 read from T0547.t2k.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)E470 (1mkfA)V165 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1mkfA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 465 :LDRLD 1mkfA 160 :KSYVD T0547 472 :PT 1mkfA 167 :ML Number of specific fragments extracted= 2 number of extra gaps= 1 total=47458 # 1gweA.465.82 read from T0547.t2k.many.frag # found chain 1gweA in training set T0547 465 :LDRLDEEPT 1gweA 83 :ALVFQPGTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=47459 # 2b5gA.465.42 read from T0547.t2k.many.frag # found chain 2b5gA in training set T0547 465 :LDRLDEEPT 2b5gA 43 :EDGFGEHPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=47460 # 1t6eX.465.196 read from T0547.t2k.many.frag # found chain 1t6eX in training set T0547 465 :LDRLDEEPT 1t6eX 197 :LVTKGGSPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=47461 # 1xgkA.465.278 read from T0547.t2k.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)D469 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xgkA)P309 T0547 465 :LDRL 1xgkA 279 :LPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=47462 # 1quqB.466.14 read from T0547.t2k.many.frag # found chain 1quqB in template set T0547 466 :DRLDEEPTR 1quqB 15 :GMLAQFIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=47463 # 1y4wA.466.71 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)R467 (1y4wA)G92 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1y4wA)G94 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1y4wA)S95 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :D 1y4wA 91 :R T0547 468 :L 1y4wA 93 :F T0547 471 :EPTR 1y4wA 96 :DVTE Number of specific fragments extracted= 3 number of extra gaps= 2 total=47466 # 1txvA.466.363 read from T0547.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0547)E470 (1txvA)R368 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1txvA)G370 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1txvA)N372 because P (beta_P) conformation "forbidden" or filtered. T0547 466 :DRLD 1txvA 364 :GDLD T0547 471 :E 1txvA 369 :D T0547 473 :T 1txvA 371 :Y Number of specific fragments extracted= 3 number of extra gaps= 3 total=47469 # 1ryoA.466.235 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)E471 (1ryoA)C241 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1ryoA)A244 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRLDE 1ryoA 236 :DEYKD T0547 473 :T 1ryoA 243 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=47471 # 4bcl.466.245 read from T0547.t2k.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)E470 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (4bcl)A252 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRLD 4bcl 246 :EQLN T0547 471 :E 4bcl 251 :P T0547 473 :TR 4bcl 253 :SI Number of specific fragments extracted= 3 number of extra gaps= 2 total=47474 # 1xv5A.466.259 read from T0547.t2k.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)E471 (1xv5A)A1264 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1xv5A)N1266 because L (left) conformation "forbidden" or filtered. T0547 466 :DRLDE 1xv5A 1259 :DKMNL T0547 472 :P 1xv5A 1265 :P T0547 474 :R 1xv5A 1267 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=47477 # 1v6sA.466.175 read from T0547.t2k.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)E471 (1v6sA)D181 because L (left) conformation "forbidden" or filtered. T0547 466 :DRLDE 1v6sA 176 :SRLLK T0547 472 :PTR 1v6sA 182 :PER Number of specific fragments extracted= 2 number of extra gaps= 1 total=47479 # 1vp6A.466.45 read from T0547.t2k.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)E470 (1vp6A)E267 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRLD 1vp6A 263 :CRIG T0547 471 :E 1vp6A 268 :P T0547 473 :TR 1vp6A 270 :DR Number of specific fragments extracted= 3 number of extra gaps= 2 total=47482 # 1jayA.466.140 read from T0547.t2k.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)P472 (1jayA)F147 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRLDEE 1jayA 141 :ANLDEK T0547 473 :TR 1jayA 148 :DW Number of specific fragments extracted= 2 number of extra gaps= 1 total=47484 # 1h2wA.466.266 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)T473 (1h2wA)T274 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1h2wA)G275 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRLDEEP 1h2wA 267 :QQESNGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=47485 # 2b5gA.466.43 read from T0547.t2k.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRLDEEPT 2b5gA 44 :DGFGEHPF Number of specific fragments extracted= 1 number of extra gaps= 1 total=47486 # 2pth.466.120 read from T0547.t2k.many.frag # found chain 2pth in training set Warning: unaligning (T0547)D469 (2pth)G124 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (2pth)N125 because L (left) conformation "forbidden" or filtered. T0547 466 :DRL 2pth 121 :SKL T0547 471 :EPTR 2pth 126 :NPNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=47488 # 1uasA.466.317 read from T0547.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)D469 (1uasA)G321 because T (delta_L) conformation "forbidden" or filtered. T0547 466 :DRL 1uasA 318 :SNI T0547 470 :EEPTR 1uasA 322 :LAGSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47490 # 1e9rA.466.270 read from T0547.t2k.many.frag # found chain 1e9rA in template set T0547 466 :DRLDEEPTR 1e9rA 341 :LSLPEEPKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=47491 # 2cbiA.466.382 read from T0547.t2k.many.frag # found chain 2cbiA in template set Warning: unaligning (T0547)D466 (2cbiA)H413 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RLDEEPTR 2cbiA 414 :GLDKGLNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=47492 # 1obfO.466.222 read from T0547.t2k.many.frag # found chain 1obfO in template set Warning: unaligning (T0547)P472 (1obfO)L229 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1obfO)G231 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRLDEE 1obfO 223 :PELDGK T0547 473 :T 1obfO 230 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=47494 # 2a5zA.466.109 read from T0547.t2k.many.frag # found chain 2a5zA in template set T0547 466 :DRLDEEPTR 2a5zA 110 :AIFPKESEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47495 # 1hf2A.466.149 read from T0547.t2k.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)R467 (1hf2A)G151 because T (delta_L) conformation "forbidden" or filtered. T0547 466 :D 1hf2A 150 :A T0547 468 :LDEEPTR 1hf2A 152 :LNEGGQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47497 # 1mkfA.466.160 read from T0547.t2k.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)E471 (1mkfA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 466 :DRLDE 1mkfA 161 :SYVDV T0547 472 :PTR 1mkfA 167 :MLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=47499 # 1t82A.466.118 read from T0547.t2k.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)E471 (1t82A)G114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRLDE 1t82A 109 :SPLQR T0547 473 :TR 1t82A 116 :KA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47501 # 1efdN.466.194 read from T0547.t2k.many.frag # found chain 1efdN in template set T0547 466 :DRLDEEPTR 1efdN 225 :DRLAAYKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=47502 # 1z70X.466.36 read from T0547.t2k.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)D469 (1z70X)G1112 because L (left) conformation "forbidden" or filtered. T0547 466 :DRL 1z70X 1109 :KQD T0547 470 :EEPTR 1z70X 1113 :EAPAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=47504 # 1gweA.466.83 read from T0547.t2k.many.frag # found chain 1gweA in training set Warning: unaligning (T0547)E471 (1gweA)G89 because T (delta_L) conformation "forbidden" or filtered. T0547 466 :DRLDE 1gweA 84 :LVFQP T0547 472 :PTR 1gweA 90 :TKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=47506 # 1d5tA.466.325 read from T0547.t2k.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)D469 (1d5tA)N327 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1d5tA)S330 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRL 1d5tA 324 :NQV T0547 470 :EE 1d5tA 328 :RK T0547 473 :TR 1d5tA 331 :DI Number of specific fragments extracted= 3 number of extra gaps= 2 total=47509 2bj0A expands to /projects/compbio/data/pdb/2bj0.pdb.gz 2bj0A:# 2bj0A.466.124 read from T0547.t2k.many.frag # adding 2bj0A to template set # found chain 2bj0A in template set Warning: unaligning (T0547)T473 (2bj0A)G132 because S (epsilon) conformation "forbidden" or filtered. T0547 466 :DRLDEEP 2bj0A 125 :INVDTEP T0547 474 :R 2bj0A 133 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=47511 # 1pii.466.391 read from T0547.t2k.many.frag # found chain 1pii in template set Warning: unaligning (T0547)E470 (1pii)G396 because T (delta_L) conformation "forbidden" or filtered. T0547 466 :DRLD 1pii 392 :SLLN T0547 471 :EPTR 1pii 397 :QSLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=47513 # 1ta0A.466.117 read from T0547.t2k.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)D469 (1ta0A)G196 because T (delta_L) conformation "forbidden" or filtered. T0547 466 :DRL 1ta0A 193 :SRL T0547 470 :EEPTR 1ta0A 197 :RDLRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=47515 # 1n12A.466.18 read from T0547.t2k.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)P472 (1n12A)G36 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1n12A)N37 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRLDEE 1n12A 30 :QTLSQN T0547 474 :R 1n12A 38 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=47517 # 1f8vA.466.213 read from T0547.t2k.many.frag # found chain 1f8vA in template set Warning: unaligning (T0547)D469 (1f8vA)R223 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRL 1f8vA 220 :RGI T0547 470 :EEPTR 1f8vA 224 :PLAPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=47519 # 1ikoP.466.75 read from T0547.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0547)E470 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ikoP)V111 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRLD 1ikoP 105 :ARPD T0547 471 :E 1ikoP 110 :D T0547 473 :TR 1ikoP 112 :KF Number of specific fragments extracted= 3 number of extra gaps= 2 total=47522 # 1y4wA.467.72 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)E470 (1y4wA)S95 because Y (epsilon') conformation "forbidden" or filtered. T0547 467 :RLD 1y4wA 92 :GFG T0547 471 :EPTRS 1y4wA 96 :DVTEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=47524 # 1quqB.467.15 read from T0547.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)T473 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0547 467 :RLDEEP 1quqB 16 :MLAQFI T0547 474 :RS 1quqB 23 :KP Number of specific fragments extracted= 2 number of extra gaps= 1 total=47526 # 1txvA.467.364 read from T0547.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0547)R467 (1txvA)D365 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1txvA)R368 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1txvA)G370 because T (delta_L) conformation "forbidden" or filtered. T0547 468 :LD 1txvA 366 :LD T0547 471 :E 1txvA 369 :D T0547 473 :TRS 1txvA 371 :YND Number of specific fragments extracted= 3 number of extra gaps= 3 total=47529 # 1ryoA.467.236 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1ryoA)A244 because Y (epsilon') conformation "forbidden" or filtered. T0547 467 :RLDEE 1ryoA 237 :EYKDC T0547 473 :T 1ryoA 243 :L T0547 475 :S 1ryoA 245 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=47532 # 1vp6A.467.46 read from T0547.t2k.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RLDEE 1vp6A 264 :RIGEP T0547 473 :TRS 1vp6A 270 :DRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=47534 # 1jayA.467.141 read from T0547.t2k.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)E470 (1jayA)E145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1jayA)F147 because Y (epsilon') conformation "forbidden" or filtered. T0547 467 :RLD 1jayA 142 :NLD T0547 471 :E 1jayA 146 :K T0547 473 :TRS 1jayA 148 :DWD Number of specific fragments extracted= 3 number of extra gaps= 2 total=47537 # 1v6sA.467.176 read from T0547.t2k.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)E471 (1v6sA)D181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1v6sA)P185 because C (cis) conformation "forbidden" or filtered. T0547 467 :RLDE 1v6sA 177 :RLLK T0547 472 :PTR 1v6sA 182 :PER Number of specific fragments extracted= 2 number of extra gaps= 2 total=47539 # 1xv5A.467.260 read from T0547.t2k.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)T473 (1xv5A)N1266 because L (left) conformation "forbidden" or filtered. T0547 467 :RLDEEP 1xv5A 1260 :KMNLAP T0547 474 :RS 1xv5A 1267 :QP Number of specific fragments extracted= 2 number of extra gaps= 1 total=47541 # 2b5gA.467.44 read from T0547.t2k.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)E471 (2b5gA)H49 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. T0547 467 :RLDE 2b5gA 45 :GFGE T0547 472 :PT 2b5gA 50 :PF T0547 475 :S 2b5gA 53 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=47544 # 1hf2A.467.150 read from T0547.t2k.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)R474 (1hf2A)A158 because P (beta_P) conformation "forbidden" or filtered. T0547 467 :RLDEEPT 1hf2A 151 :GLNEGGQ T0547 475 :S 1hf2A 159 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=47546 # 1uasA.467.318 read from T0547.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)D469 (1uasA)G321 because T (delta_L) conformation "forbidden" or filtered. T0547 467 :RL 1uasA 319 :NI T0547 470 :EEPTRS 1uasA 322 :LAGSVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47548 # 1obfO.467.223 read from T0547.t2k.many.frag # found chain 1obfO in template set Warning: unaligning (T0547)P472 (1obfO)L229 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RLDEE 1obfO 224 :ELDGK T0547 473 :TRS 1obfO 230 :NGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=47550 # 2pth.467.121 read from T0547.t2k.many.frag # found chain 2pth in training set Warning: unaligning (T0547)D469 (2pth)G124 because L (left) conformation "forbidden" or filtered. T0547 467 :RL 2pth 122 :KL T0547 470 :EEPTRS 2pth 125 :NNPNFH Number of specific fragments extracted= 2 number of extra gaps= 1 total=47552 # 4bcl.467.246 read from T0547.t2k.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)E470 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (4bcl)A252 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RLD 4bcl 247 :QLN T0547 471 :E 4bcl 251 :P T0547 473 :TRS 4bcl 253 :SIE Number of specific fragments extracted= 3 number of extra gaps= 2 total=47555 # 2a5zA.467.110 read from T0547.t2k.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)R467 (2a5zA)I111 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L468 (2a5zA)F112 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (2a5zA)P113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (2a5zA)E117 because L (left) conformation "forbidden" or filtered. T0547 470 :EEP 2a5zA 114 :KES T0547 474 :RS 2a5zA 118 :LE Number of specific fragments extracted= 2 number of extra gaps= 2 total=47557 # 1h2wA.467.267 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)R474 (1h2wA)G275 because Y (epsilon') conformation "forbidden" or filtered. T0547 467 :RLDEEPT 1h2wA 268 :QESNGIT T0547 475 :S 1h2wA 276 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=47559 # 1e9rA.467.271 read from T0547.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)R474 (1e9rA)R349 because P (beta_P) conformation "forbidden" or filtered. T0547 467 :RLDEEPT 1e9rA 342 :SLPEEPK T0547 475 :S 1e9rA 350 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=47561 # 2cbiA.467.383 read from T0547.t2k.many.frag # found chain 2cbiA in template set T0547 467 :RLDEEPTRS 2cbiA 414 :GLDKGLNQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=47562 # 1mkfA.467.161 read from T0547.t2k.many.frag # found chain 1mkfA in template set T0547 467 :RLDEEPTRS 1mkfA 162 :YVDVGMLTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=47563 # 1z70X.467.37 read from T0547.t2k.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)D469 (1z70X)G1112 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1z70X)R1118 because P (beta_P) conformation "forbidden" or filtered. T0547 467 :RL 1z70X 1110 :QD T0547 470 :EEPTR 1z70X 1113 :EAPAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=47565 # 2bj0A.467.125 read from T0547.t2k.many.frag # found chain 2bj0A in template set T0547 467 :RLDEEPTRS 2bj0A 126 :NVDTEPGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=47566 # 1nxmA.467.53 read from T0547.t2k.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)E471 (1nxmA)G58 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1nxmA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RLDE 1nxmA 54 :FFAE T0547 473 :TRS 1nxmA 60 :LQN Number of specific fragments extracted= 2 number of extra gaps= 1 total=47568 # 1t82A.467.119 read from T0547.t2k.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)E471 (1t82A)G114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RLDE 1t82A 110 :PLQR T0547 473 :TRS 1t82A 116 :KAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=47570 # 1n12A.467.19 read from T0547.t2k.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)D469 (1n12A)S33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1n12A)G36 because S (epsilon) conformation "forbidden" or filtered. T0547 467 :RL 1n12A 31 :TL T0547 470 :EE 1n12A 34 :QN T0547 473 :TRS 1n12A 37 :NHE Number of specific fragments extracted= 3 number of extra gaps= 2 total=47573 # 1gweA.467.84 read from T0547.t2k.many.frag # found chain 1gweA in training set Warning: unaligning (T0547)E471 (1gweA)G89 because T (delta_L) conformation "forbidden" or filtered. T0547 467 :RLDE 1gweA 85 :VFQP T0547 472 :PTRS 1gweA 90 :TKTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=47575 # 1t6eX.467.198 read from T0547.t2k.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)D469 (1t6eX)G201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1t6eX)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 467 :RL 1t6eX 199 :TK T0547 471 :EPTRS 1t6eX 203 :SPAHY Number of specific fragments extracted= 2 number of extra gaps= 1 total=47577 # 1ta0A.467.118 read from T0547.t2k.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)D469 (1ta0A)G196 because T (delta_L) conformation "forbidden" or filtered. T0547 467 :RL 1ta0A 194 :RL T0547 470 :EEPTRS 1ta0A 197 :RDLRRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47579 # 8abp.467.271 read from T0547.t2k.many.frag # found chain 8abp in training set Warning: unaligning (T0547)D469 (8abp)D274 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 because of BadResidue code BAD_PEPTIDE in next template residue (8abp)E276 Warning: unaligning (T0547)E471 because of BadResidue code BAD_PEPTIDE at template residue (8abp)E276 T0547 467 :RL 8abp 272 :AK T0547 472 :PTRS 8abp 277 :PPKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=47581 1l4dB expands to /projects/compbio/data/pdb/1l4d.pdb.gz 1l4dB:# 1l4dB.467.100 read from T0547.t2k.many.frag # adding 1l4dB to template set # found chain 1l4dB in template set Warning: unaligning (T0547)P472 (1l4dB)P131 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1l4dB)Q133 because Y (epsilon') conformation "forbidden" or filtered. T0547 467 :RLDEE 1l4dB 126 :TLPTQ T0547 473 :T 1l4dB 132 :V T0547 475 :S 1l4dB 134 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=47584 # 1ikoP.467.76 read from T0547.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0547)E470 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ikoP)V111 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RLD 1ikoP 106 :RPD T0547 471 :E 1ikoP 110 :D T0547 473 :TRS 1ikoP 112 :KFT Number of specific fragments extracted= 3 number of extra gaps= 2 total=47587 # 1y4wA.468.73 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)D469 (1y4wA)G94 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1y4wA)S95 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1y4wA)T98 because G (3-10) conformation "forbidden" or filtered. T0547 468 :L 1y4wA 93 :F T0547 471 :EP 1y4wA 96 :DV T0547 474 :RSA 1y4wA 99 :EMY Number of specific fragments extracted= 3 number of extra gaps= 2 total=47590 # 1quqB.468.16 read from T0547.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)T473 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDEEP 1quqB 17 :LAQFI T0547 474 :RS 1quqB 23 :KP Number of specific fragments extracted= 2 number of extra gaps= 2 total=47592 # 1vp6A.468.47 read from T0547.t2k.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)D469 (1vp6A)G266 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1vp6A)R271 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1vp6A)F273 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :L 1vp6A 265 :I T0547 470 :EE 1vp6A 267 :EP T0547 473 :T 1vp6A 270 :D T0547 475 :S 1vp6A 272 :M Number of specific fragments extracted= 4 number of extra gaps= 4 total=47596 # 1hf2A.468.151 read from T0547.t2k.many.frag # found chain 1hf2A in template set T0547 468 :LDEEPTRSA 1hf2A 152 :LNEGGQAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=47597 # 2b5gA.468.45 read from T0547.t2k.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDEEPT 2b5gA 46 :FGEHPF T0547 475 :SA 2b5gA 53 :HC Number of specific fragments extracted= 2 number of extra gaps= 1 total=47599 # 1jayA.468.142 read from T0547.t2k.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)P472 (1jayA)F147 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1jayA)V151 because D (zeta) conformation "forbidden" or filtered. T0547 468 :LDEE 1jayA 143 :LDEK T0547 473 :TRS 1jayA 148 :DWD Number of specific fragments extracted= 2 number of extra gaps= 2 total=47601 # 1v6sA.468.177 read from T0547.t2k.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)E471 (1v6sA)D181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1v6sA)P185 because C (cis) conformation "forbidden" or filtered. T0547 468 :LDE 1v6sA 178 :LLK T0547 472 :PTR 1v6sA 182 :PER T0547 476 :A 1v6sA 186 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=47604 # 1xv5A.468.261 read from T0547.t2k.many.frag # found chain 1xv5A in training set T0547 468 :LDEEPTRSA 1xv5A 1261 :MNLAPNQPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=47605 # 2a5zA.468.111 read from T0547.t2k.many.frag # found chain 2a5zA in template set T0547 468 :LDEEPTRSA 2a5zA 112 :FPKESELEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=47606 # 2pth.468.122 read from T0547.t2k.many.frag # found chain 2pth in training set Warning: unaligning (T0547)D469 (2pth)G124 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (2pth)N125 because L (left) conformation "forbidden" or filtered. T0547 468 :L 2pth 123 :L T0547 471 :EPTRSA 2pth 126 :NPNFHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=47608 # 1uasA.468.319 read from T0547.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)D469 (1uasA)G321 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1uasA)L322 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1uasA)A327 because P (beta_P) conformation "forbidden" or filtered. T0547 468 :L 1uasA 320 :I T0547 471 :EPTR 1uasA 323 :AGSV T0547 476 :A 1uasA 328 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=47611 # 1txvA.468.365 read from T0547.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0547)E470 (1txvA)R368 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1txvA)G370 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1txvA)I374 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LD 1txvA 366 :LD T0547 471 :E 1txvA 369 :D T0547 473 :TRS 1txvA 371 :YND Number of specific fragments extracted= 3 number of extra gaps= 3 total=47614 # 1ryoA.468.237 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1ryoA)A244 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDEE 1ryoA 238 :YKDC T0547 473 :T 1ryoA 243 :L T0547 475 :SA 1ryoA 245 :QV Number of specific fragments extracted= 3 number of extra gaps= 2 total=47617 # 1e9rA.468.272 read from T0547.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)A476 (1e9rA)L351 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :LDEEPTRS 1e9rA 343 :LPEEPKRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=47618 # 1mkfA.468.162 read from T0547.t2k.many.frag # found chain 1mkfA in template set T0547 468 :LDEEPTRSA 1mkfA 163 :VDVGMLTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=47619 # 1obfO.468.224 read from T0547.t2k.many.frag # found chain 1obfO in template set Warning: unaligning (T0547)P472 (1obfO)L229 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1obfO)Y232 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDEE 1obfO 225 :LDGK T0547 473 :TR 1obfO 230 :NG T0547 476 :A 1obfO 233 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=47622 # 1l4dB.468.101 read from T0547.t2k.many.frag # found chain 1l4dB in template set Warning: unaligning (T0547)D469 (1l4dB)P128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1l4dB)Q130 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1l4dB)Q133 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :L 1l4dB 127 :L T0547 470 :E 1l4dB 129 :T T0547 472 :PT 1l4dB 131 :PV T0547 475 :SA 1l4dB 134 :EF Number of specific fragments extracted= 4 number of extra gaps= 3 total=47626 # 1tovA.468.24 read from T0547.t2k.many.frag # found chain 1tovA in training set Warning: unaligning (T0547)A476 (1tovA)G164 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDEEPTRS 1tovA 156 :VGAQMARR Number of specific fragments extracted= 1 number of extra gaps= 1 total=47627 # 1z70X.468.38 read from T0547.t2k.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)E471 (1z70X)A1114 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :LDE 1z70X 1111 :DGE T0547 472 :PTRSA 1z70X 1115 :PARRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47629 # 1ryaA.468.94 read from T0547.t2k.many.frag # found chain 1ryaA in training set Warning: unaligning (T0547)D469 (1ryaA)G96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ryaA)F99 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :L 1ryaA 95 :S T0547 470 :EE 1ryaA 97 :TD T0547 473 :TRSA 1ryaA 100 :TTHY Number of specific fragments extracted= 3 number of extra gaps= 2 total=47632 # 2bj0A.468.126 read from T0547.t2k.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)T473 (2bj0A)G132 because S (epsilon) conformation "forbidden" or filtered. T0547 468 :LDEEP 2bj0A 127 :VDTEP T0547 474 :RSA 2bj0A 133 :ATC Number of specific fragments extracted= 2 number of extra gaps= 1 total=47634 # 1ta0A.468.119 read from T0547.t2k.many.frag # found chain 1ta0A in template set T0547 468 :LDEEPTRSA 1ta0A 195 :LGRDLRRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47635 # 1h1nA.468.185 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)P472 (1h1nA)S190 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1h1nA)D191 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1h1nA)K192 because G (3-10) conformation "forbidden" or filtered. T0547 468 :LDEE 1h1nA 186 :LTDP T0547 475 :SA 1h1nA 193 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=47637 # 1rloA.468.202 read from T0547.t2k.many.frag # found chain 1rloA in template set Warning: unaligning (T0547)D469 (1rloA)D204 because L (left) conformation "forbidden" or filtered. T0547 468 :L 1rloA 203 :W T0547 470 :EEPTRSA 1rloA 205 :LSPQNVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47639 # 1t6eX.468.199 read from T0547.t2k.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)A476 (1t6eX)I208 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDEEPTRS 1t6eX 200 :KGGSPAHY Number of specific fragments extracted= 1 number of extra gaps= 1 total=47640 # 8abp.468.272 read from T0547.t2k.many.frag # found chain 8abp in training set Warning: unaligning (T0547)E470 because of BadResidue code BAD_PEPTIDE in next template residue (8abp)E276 Warning: unaligning (T0547)E471 because of BadResidue code BAD_PEPTIDE at template residue (8abp)E276 T0547 468 :LD 8abp 273 :KD T0547 472 :PTRSA 8abp 277 :PPKFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=47642 # 1jc9A.468.146 read from T0547.t2k.many.frag # found chain 1jc9A in template set Warning: unaligning (T0547)E471 (1jc9A)N150 because T (delta_L) conformation "forbidden" or filtered. T0547 468 :LDE 1jc9A 147 :DKE T0547 472 :PTRSA 1jc9A 151 :DTRYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47644 # 1h2wA.468.268 read from T0547.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)E471 (1h2wA)G272 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1h2wA)T274 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1h2wA)G275 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDE 1h2wA 269 :ESN T0547 472 :P 1h2wA 273 :I T0547 475 :SA 1h2wA 276 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=47647 # 1nxmA.468.54 read from T0547.t2k.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)E471 (1nxmA)G58 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1nxmA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :LDE 1nxmA 55 :FAE T0547 473 :TRSA 1nxmA 60 :LQNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=47649 # 1gweA.468.85 read from T0547.t2k.many.frag # found chain 1gweA in training set T0547 468 :LDEEPTRSA 1gweA 86 :FQPGTKTET Number of specific fragments extracted= 1 number of extra gaps= 0 total=47650 # 1quqB.469.17 read from T0547.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)T473 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0547 469 :DEEP 1quqB 18 :AQFI T0547 474 :RS 1quqB 23 :KP T0547 477 :S 1quqB 26 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=47653 # 1hf2A.469.152 read from T0547.t2k.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)E471 (1hf2A)G155 because S (epsilon) conformation "forbidden" or filtered. T0547 469 :DE 1hf2A 153 :NE T0547 472 :PTRSAS 1hf2A 156 :GQAVVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47655 # 1y4wA.469.74 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)D469 (1y4wA)G94 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1y4wA)S95 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EPTRSAS 1y4wA 96 :DVTEMYF Number of specific fragments extracted= 1 number of extra gaps= 1 total=47656 # 1vp6A.469.48 read from T0547.t2k.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 469 :DEE 1vp6A 266 :GEP T0547 473 :TRSAS 1vp6A 270 :DRMFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=47658 # 2b5gA.469.46 read from T0547.t2k.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (2b5gA)C54 because E (beta_S) conformation "forbidden" or filtered. T0547 469 :DEEPT 2b5gA 47 :GEHPF T0547 475 :S 2b5gA 53 :H T0547 477 :S 2b5gA 55 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=47661 # 1tovA.469.25 read from T0547.t2k.many.frag # found chain 1tovA in training set T0547 469 :DEEPTRSAS 1tovA 157 :GAQMARRGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=47662 # 2a5zA.469.112 read from T0547.t2k.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)T473 (2a5zA)E117 because L (left) conformation "forbidden" or filtered. T0547 469 :DEEP 2a5zA 113 :PKES T0547 474 :RSAS 2a5zA 118 :LEVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=47664 # 1xv5A.469.262 read from T0547.t2k.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)T473 (1xv5A)N1266 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1xv5A)A1269 because P (beta_P) conformation "forbidden" or filtered. T0547 469 :DEEP 1xv5A 1262 :NLAP T0547 474 :RS 1xv5A 1267 :QP T0547 477 :S 1xv5A 1270 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=47667 # 1jc9A.469.147 read from T0547.t2k.many.frag # found chain 1jc9A in template set Warning: unaligning (T0547)E471 (1jc9A)N150 because T (delta_L) conformation "forbidden" or filtered. T0547 469 :DE 1jc9A 148 :KE T0547 472 :PTRSAS 1jc9A 151 :DTRYAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=47669 # 1l4dB.469.102 read from T0547.t2k.many.frag # found chain 1l4dB in template set Warning: unaligning (T0547)D469 (1l4dB)P128 because P (beta_P) conformation "forbidden" or filtered. T0547 470 :EEPTRSAS 1l4dB 129 :TQPVQEFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=47670 # 1v6sA.469.178 read from T0547.t2k.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)E471 (1v6sA)D181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1v6sA)P185 because C (cis) conformation "forbidden" or filtered. T0547 469 :DE 1v6sA 179 :LK T0547 472 :PTR 1v6sA 182 :PER T0547 476 :AS 1v6sA 186 :YA Number of specific fragments extracted= 3 number of extra gaps= 2 total=47673 # 1h1nA.469.186 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)P472 (1h1nA)S190 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1h1nA)D191 because L (left) conformation "forbidden" or filtered. T0547 469 :DEE 1h1nA 187 :TDP T0547 474 :RSAS 1h1nA 192 :KIIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=47675 # 1uasA.469.320 read from T0547.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)E471 (1uasA)A323 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1uasA)V328 because Y (epsilon') conformation "forbidden" or filtered. T0547 469 :DE 1uasA 321 :GL T0547 472 :PTRS 1uasA 324 :GSVA T0547 477 :S 1uasA 329 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=47678 # 1ewnA.469.32 read from T0547.t2k.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)E471 (1ewnA)G114 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1ewnA)L117 because P (beta_P) conformation "forbidden" or filtered. T0547 469 :DE 1ewnA 112 :PN T0547 472 :PT 1ewnA 115 :TE T0547 475 :SAS 1ewnA 118 :RGR Number of specific fragments extracted= 3 number of extra gaps= 2 total=47681 # 2pth.469.123 read from T0547.t2k.many.frag # found chain 2pth in training set Warning: unaligning (T0547)D469 (2pth)G124 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (2pth)N125 because L (left) conformation "forbidden" or filtered. T0547 471 :EPTRSAS 2pth 126 :NPNFHRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=47682 # 1rloA.469.203 read from T0547.t2k.many.frag # found chain 1rloA in template set T0547 469 :DEEPTRSAS 1rloA 204 :DLSPQNVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=47683 # 1ta0A.469.120 read from T0547.t2k.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)D469 (1ta0A)G196 because T (delta_L) conformation "forbidden" or filtered. T0547 470 :EEPTRSAS 1ta0A 197 :RDLRRVLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=47684 # 1ryaA.469.95 read from T0547.t2k.many.frag # found chain 1ryaA in training set Warning: unaligning (T0547)D469 (1ryaA)G96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ryaA)F99 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EE 1ryaA 97 :TD T0547 473 :TRSAS 1ryaA 100 :TTHYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=47686 1hi9A expands to /projects/compbio/data/pdb/1hi9.pdb.gz 1hi9A:# 1hi9A.469.91 read from T0547.t2k.many.frag # adding 1hi9A to template set # found chain 1hi9A in template set Warning: unaligning (T0547)D469 (1hi9A)D92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1hi9A)G97 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EEPT 1hi9A 93 :DTFR T0547 475 :SAS 1hi9A 98 :ALF Number of specific fragments extracted= 2 number of extra gaps= 2 total=47688 # 1jayA.469.143 read from T0547.t2k.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)P472 (1jayA)F147 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1jayA)D150 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1jayA)V151 because D (zeta) conformation "forbidden" or filtered. T0547 469 :DEE 1jayA 144 :DEK T0547 473 :TR 1jayA 148 :DW T0547 477 :S 1jayA 152 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=47691 # 1pa1A.469.175 read from T0547.t2k.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)S475 (1pa1A)E670 because P (beta_P) conformation "forbidden" or filtered. T0547 469 :DEEPTR 1pa1A 664 :TTQETR T0547 476 :AS 1pa1A 671 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=47693 # 1mkfA.469.163 read from T0547.t2k.many.frag # found chain 1mkfA in template set T0547 469 :DEEPTRSAS 1mkfA 164 :DVGMLTRAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=47694 # 2a7bA.469.22 read from T0547.t2k.many.frag # found chain 2a7bA in training set T0547 469 :DEEPTRSAS 2a7bA 725 :NTNPSVTVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=47695 # 1txvA.469.366 read from T0547.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0547)P472 (1txvA)G370 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1txvA)I374 because Y (epsilon') conformation "forbidden" or filtered. T0547 469 :DEE 1txvA 367 :DRD T0547 473 :TRS 1txvA 371 :YND T0547 477 :S 1txvA 375 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=47698 # 1me4A.469.156 read from T0547.t2k.many.frag # found chain 1me4A in training set Warning: unaligning (T0547)S475 (1me4A)G160 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1me4A)V161 because Y (epsilon') conformation "forbidden" or filtered. T0547 469 :DEEPTR 1me4A 155 :SEQLDH T0547 477 :S 1me4A 162 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=47700 # 1e9rA.469.273 read from T0547.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)E471 (1e9rA)E346 because D (zeta) conformation "forbidden" or filtered. T0547 469 :DE 1e9rA 344 :PE T0547 472 :PTRSAS 1e9rA 347 :PKRRLW Number of specific fragments extracted= 2 number of extra gaps= 1 total=47702 # 1x8qA.469.61 read from T0547.t2k.many.frag # found chain 1x8qA in training set Warning: unaligning (T0547)P472 (1x8qA)Q65 because T (delta_L) conformation "forbidden" or filtered. T0547 469 :DEE 1x8qA 62 :PKT T0547 473 :TRSAS 1x8qA 66 :DTFYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=47704 # 2ew0A.469.114 read from T0547.t2k.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)D469 (2ew0A)N115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (2ew0A)G117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (2ew0A)G119 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (2ew0A)R120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (2ew0A)Y121 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :E 2ew0A 116 :E T0547 472 :P 2ew0A 118 :V T0547 476 :AS 2ew0A 122 :QI Number of specific fragments extracted= 3 number of extra gaps= 3 total=47707 # 1z70X.469.39 read from T0547.t2k.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)D469 (1z70X)G1112 because L (left) conformation "forbidden" or filtered. T0547 470 :EEPTRSAS 1z70X 1113 :EAPARRVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=47708 # 1vjjA.469.620 read from T0547.t2k.many.frag # found chain 1vjjA in template set Warning: unaligning (T0547)P472 (1vjjA)V624 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1vjjA)C627 because P (beta_P) conformation "forbidden" or filtered. T0547 469 :DEE 1vjjA 621 :DEP T0547 473 :TR 1vjjA 625 :RD T0547 476 :AS 1vjjA 628 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=47711 # 1hf2A.470.153 read from T0547.t2k.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)R474 (1hf2A)A158 because P (beta_P) conformation "forbidden" or filtered. T0547 470 :EEPT 1hf2A 154 :EGGQ T0547 475 :SASI 1hf2A 159 :VVAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47713 # 1quqB.470.18 read from T0547.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)T473 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0547 470 :EEP 1quqB 19 :QFI T0547 474 :RSASI 1quqB 23 :KPVCF Number of specific fragments extracted= 2 number of extra gaps= 1 total=47715 # 2b5gA.470.47 read from T0547.t2k.many.frag # found chain 2b5gA in training set T0547 470 :EEPTRSASI 2b5gA 48 :EHPFYHCLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=47716 # 1tovA.470.26 read from T0547.t2k.many.frag # found chain 1tovA in training set Warning: unaligning (T0547)S475 (1tovA)R163 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1tovA)G164 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EEPTR 1tovA 158 :AQMAR T0547 477 :SI 1tovA 165 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47718 # 2a5zA.470.113 read from T0547.t2k.many.frag # found chain 2a5zA in template set T0547 470 :EEPTRSASI 2a5zA 114 :KESELEVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=47719 # 1vp6A.470.49 read from T0547.t2k.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)E471 (1vp6A)P268 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 470 :E 1vp6A 267 :E T0547 473 :TRSASI 1vp6A 270 :DRMFFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47721 # 1xv5A.470.263 read from T0547.t2k.many.frag # found chain 1xv5A in training set T0547 470 :EEPTRSASI 1xv5A 1263 :LAPNQPAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=47722 # 1h1nA.470.187 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)P472 (1h1nA)S190 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1h1nA)D191 because L (left) conformation "forbidden" or filtered. T0547 470 :EE 1h1nA 188 :DP T0547 474 :RSASI 1h1nA 192 :KIIYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=47724 # 1l4dB.470.103 read from T0547.t2k.many.frag # found chain 1l4dB in template set Warning: unaligning (T0547)P472 (1l4dB)P131 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1l4dB)Q133 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EE 1l4dB 129 :TQ T0547 473 :T 1l4dB 132 :V T0547 475 :SASI 1l4dB 134 :EFLL Number of specific fragments extracted= 3 number of extra gaps= 2 total=47727 # 1y4wA.470.75 read from T0547.t2k.many.frag # found chain 1y4wA in training set T0547 470 :EEPTRSASI 1y4wA 95 :SDVTEMYFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=47728 # 1jc9A.470.148 read from T0547.t2k.many.frag # found chain 1jc9A in template set Warning: unaligning (T0547)E471 (1jc9A)N150 because T (delta_L) conformation "forbidden" or filtered. T0547 470 :E 1jc9A 149 :E T0547 472 :PTRSASI 1jc9A 151 :DTRYAIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=47730 # 1xszA.470.268 read from T0547.t2k.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)P472 (1xszA)T269 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1xszA)S270 because T (delta_L) conformation "forbidden" or filtered. T0547 470 :EE 1xszA 267 :NK T0547 474 :RSASI 1xszA 271 :AQATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=47732 # 1uasA.470.321 read from T0547.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)A476 (1uasA)V328 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EEPTRS 1uasA 322 :LAGSVA T0547 477 :SI 1uasA 329 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47734 # 2a7bA.470.23 read from T0547.t2k.many.frag # found chain 2a7bA in training set T0547 470 :EEPTRSASI 2a7bA 726 :TNPSVTVIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=47735 # 1bob.470.208 read from T0547.t2k.many.frag # found chain 1bob in template set Warning: unaligning (T0547)E470 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1bob)I209 Warning: unaligning (T0547)P472 (1bob)K211 because E (beta_S) conformation "forbidden" or filtered. T0547 471 :E 1bob 210 :D T0547 473 :TRSASI 1bob 212 :KFRAKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=47737 # 1me4A.470.157 read from T0547.t2k.many.frag # found chain 1me4A in training set Warning: unaligning (T0547)A476 (1me4A)V161 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EEPTRS 1me4A 156 :EQLDHG T0547 477 :SI 1me4A 162 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=47739 # 1pa1A.470.176 read from T0547.t2k.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)A476 (1pa1A)I671 because E (beta_S) conformation "forbidden" or filtered. T0547 470 :EEPTRS 1pa1A 665 :TQETRE T0547 477 :SI 1pa1A 672 :LH Number of specific fragments extracted= 2 number of extra gaps= 1 total=47741 # 1ryaA.470.96 read from T0547.t2k.many.frag # found chain 1ryaA in training set Warning: unaligning (T0547)P472 (1ryaA)F99 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1ryaA)Y103 because E (beta_S) conformation "forbidden" or filtered. T0547 470 :EE 1ryaA 97 :TD T0547 473 :TRS 1ryaA 100 :TTH T0547 477 :SI 1ryaA 104 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=47744 # 1hi9A.470.92 read from T0547.t2k.many.frag # found chain 1hi9A in template set Warning: unaligning (T0547)R474 (1hi9A)G97 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EEPT 1hi9A 93 :DTFR T0547 475 :SASI 1hi9A 98 :ALFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=47746 # 1q7lA.470.67 read from T0547.t2k.many.frag # found chain 1q7lA in training set T0547 470 :EEPTRSASI 1q7lA 68 :TNPTLSSIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47747 # 1rloA.470.204 read from T0547.t2k.many.frag # found chain 1rloA in template set T0547 470 :EEPTRSASI 1rloA 205 :LSPQNVVAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=47748 # 1x8qA.470.62 read from T0547.t2k.many.frag # found chain 1x8qA in training set Warning: unaligning (T0547)P472 (1x8qA)Q65 because T (delta_L) conformation "forbidden" or filtered. T0547 470 :EE 1x8qA 63 :KT T0547 473 :TRSASI 1x8qA 66 :DTFYDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47750 # 1ewnA.470.33 read from T0547.t2k.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)E471 (1ewnA)G114 because T (delta_L) conformation "forbidden" or filtered. T0547 470 :E 1ewnA 113 :N T0547 472 :PTRSASI 1ewnA 115 :TELRGRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=47752 # 2pth.470.124 read from T0547.t2k.many.frag # found chain 2pth in training set Warning: unaligning (T0547)E470 (2pth)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (2pth)L132 because D (zeta) conformation "forbidden" or filtered. T0547 471 :EPTRSA 2pth 126 :NPNFHR T0547 478 :I 2pth 133 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=47754 # 1ta0A.470.121 read from T0547.t2k.many.frag # found chain 1ta0A in template set T0547 470 :EEPTRSASI 1ta0A 197 :RDLRRVLIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47755 # 1v6sA.470.179 read from T0547.t2k.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)E471 (1v6sA)D181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1v6sA)P185 because C (cis) conformation "forbidden" or filtered. T0547 470 :E 1v6sA 180 :K T0547 472 :PTR 1v6sA 182 :PER T0547 476 :ASI 1v6sA 186 :YAV Number of specific fragments extracted= 3 number of extra gaps= 2 total=47758 # 1tfzA.470.366 read from T0547.t2k.many.frag # found chain 1tfzA in training set Warning: unaligning (T0547)R474 (1tfzA)F371 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EEPT 1tfzA 367 :RPTI T0547 475 :SASI 1tfzA 372 :IEII Number of specific fragments extracted= 2 number of extra gaps= 1 total=47760 1ln1A expands to /projects/compbio/data/pdb/1ln1.pdb.gz 1ln1A:# 1ln1A.470.125 read from T0547.t2k.many.frag # adding 1ln1A to template set # found chain 1ln1A in template set Warning: unaligning (T0547)A476 (1ln1A)V132 because E (beta_S) conformation "forbidden" or filtered. T0547 470 :EEPTRS 1ln1A 126 :EGRKIH T0547 477 :SI 1ln1A 133 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=47762 # 1txvA.470.367 read from T0547.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0547)E470 (1txvA)R368 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1txvA)G370 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1txvA)I374 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :E 1txvA 369 :D T0547 473 :TRS 1txvA 371 :YND T0547 477 :SI 1txvA 375 :AV Number of specific fragments extracted= 3 number of extra gaps= 3 total=47765 # 1pv5A.470.78 read from T0547.t2k.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)A476 (1pv5A)I82 because E (beta_S) conformation "forbidden" or filtered. T0547 470 :EEPTRS 1pv5A 76 :GYPSSG T0547 477 :SI 1pv5A 83 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=47767 # 1h1nA.471.188 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)P472 (1h1nA)S190 because G (3-10) conformation "forbidden" or filtered. T0547 471 :E 1h1nA 189 :P T0547 473 :TRSASIW 1h1nA 191 :DKIIYEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=47769 # 2b5gA.471.48 read from T0547.t2k.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EPT 2b5gA 49 :HPF T0547 475 :SASIW 2b5gA 53 :HCLVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47771 # 1hf2A.471.154 read from T0547.t2k.many.frag # found chain 1hf2A in template set T0547 471 :EPTRSASIW 1hf2A 155 :GGQAVVAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47772 # 1q7lA.471.68 read from T0547.t2k.many.frag # found chain 1q7lA in training set T0547 471 :EPTRSASIW 1q7lA 69 :NPTLSSILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47773 # 1xv5A.471.264 read from T0547.t2k.many.frag # found chain 1xv5A in training set T0547 471 :EPTRSASIW 1xv5A 1264 :APNQPAQIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47774 # 1xszA.471.269 read from T0547.t2k.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)P472 (1xszA)T269 because G (3-10) conformation "forbidden" or filtered. T0547 471 :E 1xszA 268 :K T0547 473 :TRSASIW 1xszA 270 :SAQATIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=47776 # 2a5zA.471.114 read from T0547.t2k.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)T473 (2a5zA)E117 because L (left) conformation "forbidden" or filtered. T0547 471 :EP 2a5zA 115 :ES T0547 474 :RSASIW 2a5zA 118 :LEVTVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=47778 # 1x8qA.471.63 read from T0547.t2k.many.frag # found chain 1x8qA in training set Warning: unaligning (T0547)P472 (1x8qA)Q65 because T (delta_L) conformation "forbidden" or filtered. T0547 471 :E 1x8qA 64 :T T0547 473 :TRSASIW 1x8qA 66 :DTFYDVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=47780 # 1pv5A.471.79 read from T0547.t2k.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)E471 (1pv5A)Y77 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1pv5A)S80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1pv5A)G81 because S (epsilon) conformation "forbidden" or filtered. T0547 472 :PT 1pv5A 78 :PS T0547 476 :ASIW 1pv5A 82 :ILQF Number of specific fragments extracted= 2 number of extra gaps= 2 total=47782 # 1quqB.471.19 read from T0547.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)T473 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EP 1quqB 20 :FI T0547 474 :RS 1quqB 23 :KP T0547 477 :SIW 1quqB 26 :CFV Number of specific fragments extracted= 3 number of extra gaps= 2 total=47785 # 2a7bA.471.24 read from T0547.t2k.many.frag # found chain 2a7bA in training set T0547 471 :EPTRSASIW 2a7bA 727 :NPSVTVITI Number of specific fragments extracted= 1 number of extra gaps= 0 total=47786 # 1pq7A.471.112 read from T0547.t2k.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)E471 (1pq7A)V128 because P (beta_P) conformation "forbidden" or filtered. T0547 472 :PTRSASIW 1pq7A 129 :AGSSATVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=47787 # 1uasA.471.322 read from T0547.t2k.many.frag # found chain 1uasA in training set T0547 471 :EPTRSASIW 1uasA 323 :AGSVAVTAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=47788 # 1tovA.471.27 read from T0547.t2k.many.frag # found chain 1tovA in training set Warning: unaligning (T0547)E471 (1tovA)Q159 because P (beta_P) conformation "forbidden" or filtered. T0547 472 :PTRSASIW 1tovA 160 :MARRGEVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=47789 # 1pa1A.471.177 read from T0547.t2k.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)E471 (1pa1A)Q666 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (1pa1A)L672 because P (beta_P) conformation "forbidden" or filtered. T0547 472 :PTRSA 1pa1A 667 :ETREI T0547 478 :IW 1pa1A 673 :HF Number of specific fragments extracted= 2 number of extra gaps= 2 total=47791 # 1jc9A.471.149 read from T0547.t2k.many.frag # found chain 1jc9A in template set Warning: unaligning (T0547)E471 (1jc9A)N150 because T (delta_L) conformation "forbidden" or filtered. T0547 472 :PTRSASIW 1jc9A 151 :DTRYAIYQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=47792 # 1l4dB.471.104 read from T0547.t2k.many.frag # found chain 1l4dB in template set Warning: unaligning (T0547)R474 (1l4dB)Q133 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EPT 1l4dB 130 :QPV T0547 475 :SASIW 1l4dB 134 :EFLLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=47794 # 1rloA.471.205 read from T0547.t2k.many.frag # found chain 1rloA in template set Warning: unaligning (T0547)R474 (1rloA)N209 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1rloA)G214 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EPT 1rloA 206 :SPQ T0547 475 :SASI 1rloA 210 :VVAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=47796 # 1me4A.471.158 read from T0547.t2k.many.frag # found chain 1me4A in training set T0547 471 :EPTRSASIW 1me4A 156A:QLDHGVLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=47797 # 1bob.471.209 read from T0547.t2k.many.frag # found chain 1bob in template set Warning: unaligning (T0547)P472 (1bob)K211 because E (beta_S) conformation "forbidden" or filtered. T0547 471 :E 1bob 210 :D T0547 473 :TRSASIW 1bob 212 :KFRAKIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=47799 # 1ryaA.471.97 read from T0547.t2k.many.frag # found chain 1ryaA in training set Warning: unaligning (T0547)P472 (1ryaA)F99 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :E 1ryaA 98 :D T0547 473 :TRSASIW 1ryaA 100 :TTHYVVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=47801 # 1y4wA.471.76 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)W479 (1y4wA)G104 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EPTRSASI 1y4wA 96 :DVTEMYFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=47802 # 1vp6A.471.50 read from T0547.t2k.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 471 :E 1vp6A 268 :P T0547 473 :TRSASIW 1vp6A 270 :DRMFFVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47804 2biqA expands to /projects/compbio/data/pdb/2biq.pdb.gz 2biqA:Skipped atom 780, because occupancy 0.500 <= existing 0.500 in 2biqA Skipped atom 781, because occupancy 0.500 <= existing 0.500 in 2biqA Skipped atom 782, because occupancy 0.500 <= existing 0.500 in 2biqA Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 2biqA Skipped atom 784, because occupancy 0.500 <= existing 0.500 in 2biqA Skipped atom 785, because occupancy 0.500 <= existing 0.500 in 2biqA Skipped atom 786, because occupancy 0.500 <= existing 0.500 in 2biqA # 2biqA.471.132 read from T0547.t2k.many.frag # adding 2biqA to template set # found chain 2biqA in template set Warning: unaligning (T0547)E471 (2biqA)G226 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (2biqA)S227 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (2biqA)C229 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :T 2biqA 228 :D T0547 475 :SASIW 2biqA 230 :TTIHY Number of specific fragments extracted= 2 number of extra gaps= 2 total=47806 # 1gsoA.471.326 read from T0547.t2k.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)P472 (1gsoA)W326 because E (beta_S) conformation "forbidden" or filtered. T0547 471 :E 1gsoA 325 :E T0547 473 :TRSASIW 1gsoA 327 :DERASLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=47808 # 2fokA.471.457 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)A476 (2fokA)G463 because E (beta_S) conformation "forbidden" or filtered. T0547 471 :EPTRS 2fokA 458 :SPIDY T0547 477 :SIW 2fokA 464 :VIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47810 1qouA expands to /projects/compbio/data/pdb/1qou.pdb.gz 1qouA:# 1qouA.471.83 read from T0547.t2k.many.frag # adding 1qouA to template set # found chain 1qouA in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1qouA)E83 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1qouA)E83 T0547 471 :EPTR 1qouA 78 :DPYL T0547 477 :SIW 1qouA 84 :HLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=47812 # 1si6X.471.123 read from T0547.t2k.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)P472 (1si6X)Y125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1si6X)N126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1si6X)R128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1si6X)T133 T0547 471 :E 1si6X 124 :I T0547 474 :R 1si6X 127 :K T0547 476 :ASI 1si6X 129 :FSF Number of specific fragments extracted= 3 number of extra gaps= 3 total=47815 # 1kqfA.471.605 read from T0547.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)P472 (1kqfA)I607 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1kqfA)T609 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1kqfA)V611 because E (beta_S) conformation "forbidden" or filtered. T0547 471 :E 1kqfA 606 :S T0547 473 :T 1kqfA 608 :Q T0547 475 :S 1kqfA 610 :E T0547 477 :SIW 1kqfA 612 :FRL Number of specific fragments extracted= 4 number of extra gaps= 3 total=47819 # 1ga6A.471.251 read from T0547.t2k.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)P472 (1ga6A)T253 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1ga6A)P260 because C (cis) conformation "forbidden" or filtered. T0547 471 :E 1ga6A 252 :G T0547 473 :TRSASI 1ga6A 254 :PGRRLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=47821 # 1q7lA.472.69 read from T0547.t2k.many.frag # found chain 1q7lA in training set T0547 472 :PTRSASIWD 1q7lA 70 :PTLSSILLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=47822 # 1h1nA.472.189 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)P472 (1h1nA)S190 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1h1nA)D191 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1h1nA)H198 because E (beta_S) conformation "forbidden" or filtered. T0547 474 :RSASIW 1h1nA 192 :KIIYEM Number of specific fragments extracted= 1 number of extra gaps= 2 total=47823 # 1pv5A.472.80 read from T0547.t2k.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)S475 (1pv5A)G81 because S (epsilon) conformation "forbidden" or filtered. T0547 472 :PTR 1pv5A 78 :PSS T0547 476 :ASIWD 1pv5A 82 :ILQFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=47825 # 1xszA.472.270 read from T0547.t2k.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)P472 (1xszA)T269 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1xszA)S270 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1xszA)V277 because E (beta_S) conformation "forbidden" or filtered. T0547 474 :RSASIW 1xszA 271 :AQATIQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=47826 # 1x8qA.472.64 read from T0547.t2k.many.frag # found chain 1x8qA in training set Warning: unaligning (T0547)P472 (1x8qA)Q65 because T (delta_L) conformation "forbidden" or filtered. T0547 473 :TRSASIWD 1x8qA 66 :DTFYDVSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=47827 # 1pq7A.472.113 read from T0547.t2k.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)T473 (1pq7A)G130 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1pq7A)G137 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :P 1pq7A 129 :A T0547 474 :RSASIW 1pq7A 131 :SSATVA Number of specific fragments extracted= 2 number of extra gaps= 2 total=47829 # 1hf2A.472.155 read from T0547.t2k.many.frag # found chain 1hf2A in template set T0547 472 :PTRSASIWD 1hf2A 156 :GQAVVAALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=47830 # 2a5zA.472.115 read from T0547.t2k.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)T473 (2a5zA)E117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2a5zA)F124 because E (beta_S) conformation "forbidden" or filtered. T0547 472 :P 2a5zA 116 :S T0547 474 :RSASIW 2a5zA 118 :LEVTVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=47832 # 1y08A.472.243 read from T0547.t2k.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)P472 (1y08A)I260 because L (left) conformation "forbidden" or filtered. T0547 473 :TRSASIWD 1y08A 261 :NHVINLWG Number of specific fragments extracted= 1 number of extra gaps= 1 total=47833 # 2b5gA.472.49 read from T0547.t2k.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PT 2b5gA 50 :PF T0547 475 :SASIWD 2b5gA 53 :HCLVAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=47835 # 1uasA.472.323 read from T0547.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)A476 (1uasA)V328 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PTRS 1uasA 324 :GSVA T0547 477 :SIWD 1uasA 329 :TARD Number of specific fragments extracted= 2 number of extra gaps= 1 total=47837 # 2biqA.472.133 read from T0547.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)P472 (2biqA)S227 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :TRSASIWD 2biqA 228 :DCTTIHYN Number of specific fragments extracted= 1 number of extra gaps= 1 total=47838 # 1xv5A.472.265 read from T0547.t2k.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)T473 (1xv5A)N1266 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1xv5A)A1269 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xv5A)Y1275 T0547 472 :P 1xv5A 1265 :P T0547 474 :RS 1xv5A 1267 :QP T0547 477 :SIW 1xv5A 1270 :QIL Number of specific fragments extracted= 3 number of extra gaps= 2 total=47841 1ylhA expands to /projects/compbio/data/pdb/1ylh.pdb.gz 1ylhA:# 1ylhA.472.323 read from T0547.t2k.many.frag # adding 1ylhA to template set # found chain 1ylhA in template set Warning: unaligning (T0547)S475 (1ylhA)D307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1ylhA)N312 because L (left) conformation "forbidden" or filtered. T0547 472 :PTR 1ylhA 304 :IRR T0547 476 :ASIW 1ylhA 308 :ALLE Number of specific fragments extracted= 2 number of extra gaps= 2 total=47843 # 1gsoA.472.327 read from T0547.t2k.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)P472 (1gsoA)W326 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :TRSASIWD 1gsoA 327 :DERASLGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=47844 # 1pa1A.472.178 read from T0547.t2k.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)S477 (1pa1A)L672 because P (beta_P) conformation "forbidden" or filtered. T0547 472 :PTRSA 1pa1A 667 :ETREI T0547 478 :IWD 1pa1A 673 :HFH Number of specific fragments extracted= 2 number of extra gaps= 1 total=47846 # 1dmhA.472.146 read from T0547.t2k.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)S475 (1dmhA)N150 because T (delta_L) conformation "forbidden" or filtered. T0547 472 :PTR 1dmhA 147 :PLP T0547 476 :ASIWD 1dmhA 151 :AKVEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=47848 # 1quqB.472.20 read from T0547.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)T473 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :P 1quqB 21 :I T0547 474 :RS 1quqB 23 :KP T0547 477 :SIWD 1quqB 26 :CFVG Number of specific fragments extracted= 3 number of extra gaps= 2 total=47851 # 1qouA.472.84 read from T0547.t2k.many.frag # found chain 1qouA in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1qouA)E83 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1qouA)E83 Warning: unaligning (T0547)D480 (1qouA)W87 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PTR 1qouA 79 :PYL T0547 477 :SIW 1qouA 84 :HLH Number of specific fragments extracted= 2 number of extra gaps= 2 total=47853 # 2a7bA.472.25 read from T0547.t2k.many.frag # found chain 2a7bA in training set T0547 472 :PTRSASIWD 2a7bA 728 :PSVTVITIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=47854 1hl9A expands to /projects/compbio/data/pdb/1hl9.pdb.gz 1hl9A:Bad short name: CX for alphabet: pdb_atoms Bad short name: OQ1 for alphabet: pdb_atoms Bad short name: OQ2 for alphabet: pdb_atoms # 1hl9A.472.315 read from T0547.t2k.many.frag # adding 1hl9A to template set # found chain 1hl9A in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1hl9A)N320 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1hl9A)N320 T0547 472 :PTR 1hl9A 316 :SKG T0547 477 :SIWD 1hl9A 321 :LLLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=47856 # 2fokA.472.458 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)R474 (2fokA)D461 because P (beta_P) conformation "forbidden" or filtered. T0547 472 :PT 2fokA 459 :PI T0547 475 :SASIWD 2fokA 462 :YGVIVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=47858 # 1kqfA.472.606 read from T0547.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)P472 (1kqfA)I607 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1kqfA)P615 because P (beta_P) conformation "forbidden" or filtered. T0547 473 :TRSASIW 1kqfA 608 :QTEVFRL Number of specific fragments extracted= 1 number of extra gaps= 2 total=47859 # 1bob.472.210 read from T0547.t2k.many.frag # found chain 1bob in template set Warning: unaligning (T0547)P472 (1bob)K211 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1bob)F213 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :T 1bob 212 :K T0547 475 :SASIWD 1bob 214 :RAKISQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=47861 # 1si6X.472.124 read from T0547.t2k.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)P472 (1si6X)Y125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1si6X)N126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1si6X)T133 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1si6X)T133 T0547 474 :RSASI 1si6X 127 :KRFSF Number of specific fragments extracted= 1 number of extra gaps= 2 total=47862 # 1ga6A.472.252 read from T0547.t2k.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)P472 (1ga6A)T253 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1ga6A)R257 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1ga6A)P260 because C (cis) conformation "forbidden" or filtered. T0547 473 :TRS 1ga6A 254 :PGR T0547 477 :SI 1ga6A 258 :LL T0547 480 :D 1ga6A 261 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=47865 # 1dc1A.472.231 read from T0547.t2k.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)D480 (1dc1A)E240 because E (beta_S) conformation "forbidden" or filtered. T0547 472 :PTRSASIW 1dc1A 232 :PEKYLLLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=47866 # 1ryaA.472.98 read from T0547.t2k.many.frag # found chain 1ryaA in training set Warning: unaligning (T0547)P472 (1ryaA)F99 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :TRSASIWD 1ryaA 100 :TTHYVVLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=47867 # 1y4wA.472.77 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)A476 (1y4wA)Y101 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1y4wA)G104 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1y4wA)S105 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PTRS 1y4wA 97 :VTEM T0547 477 :SI 1y4wA 102 :FS Number of specific fragments extracted= 2 number of extra gaps= 2 total=47869 # 1l4dB.472.105 read from T0547.t2k.many.frag # found chain 1l4dB in template set Warning: unaligning (T0547)R474 (1l4dB)Q133 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PT 1l4dB 131 :PV T0547 475 :SASIWD 1l4dB 134 :EFLLSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=47871 # 1q7lA.473.70 read from T0547.t2k.many.frag # found chain 1q7lA in training set T0547 473 :TRSASIWDI 1q7lA 71 :TLSSILLNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=47872 # 1y08A.473.244 read from T0547.t2k.many.frag # found chain 1y08A in template set T0547 473 :TRSASIWDI 1y08A 261 :NHVINLWGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=47873 # 1xszA.473.271 read from T0547.t2k.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)T473 (1xszA)S270 because T (delta_L) conformation "forbidden" or filtered. T0547 474 :RSASIWDI 1xszA 271 :AQATIQVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=47874 # 1pq7A.473.114 read from T0547.t2k.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)T473 (1pq7A)G130 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1pq7A)G137 because Y (epsilon') conformation "forbidden" or filtered. T0547 474 :RSASIW 1pq7A 131 :SSATVA T0547 481 :I 1pq7A 138 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=47876 # 1hl9A.473.316 read from T0547.t2k.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1hl9A)N320 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1hl9A)N320 T0547 473 :TR 1hl9A 317 :KG T0547 477 :SIWDI 1hl9A 321 :LLLNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=47878 # 1pv5A.473.81 read from T0547.t2k.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)R474 (1pv5A)S80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1pv5A)Y86 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :T 1pv5A 79 :S T0547 475 :SASIW 1pv5A 81 :GILQF T0547 481 :I 1pv5A 87 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=47881 # 1x8qA.473.65 read from T0547.t2k.many.frag # found chain 1x8qA in training set T0547 473 :TRSASIWDI 1x8qA 66 :DTFYDVSEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47882 # 2biqA.473.134 read from T0547.t2k.many.frag # found chain 2biqA in template set T0547 473 :TRSASIWDI 2biqA 228 :DCTTIHYNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=47883 # 1uasA.473.324 read from T0547.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)A476 (1uasA)V328 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :TRS 1uasA 325 :SVA T0547 477 :SIWDI 1uasA 329 :TARDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=47885 # 1hf2A.473.156 read from T0547.t2k.many.frag # found chain 1hf2A in template set T0547 473 :TRSASIWDI 1hf2A 157 :QAVVAALDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47886 # 2a5zA.473.116 read from T0547.t2k.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)T473 (2a5zA)E117 because L (left) conformation "forbidden" or filtered. T0547 474 :RSASIWDI 2a5zA 118 :LEVTVYFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=47887 # 1h1nA.473.190 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)T473 (1h1nA)D191 because L (left) conformation "forbidden" or filtered. T0547 474 :RSASIWDI 1h1nA 192 :KIIYEMHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=47888 # 1ylhA.473.324 read from T0547.t2k.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)R474 (1ylhA)R306 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1ylhA)D307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1ylhA)N312 because L (left) conformation "forbidden" or filtered. T0547 473 :T 1ylhA 305 :R T0547 476 :ASIW 1ylhA 308 :ALLE T0547 481 :I 1ylhA 313 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=47891 # 1kqfA.473.607 read from T0547.t2k.many.frag # found chain 1kqfA in training set T0547 473 :TRSASIWDI 1kqfA 608 :QTEVFRLPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=47892 # 1qouA.473.85 read from T0547.t2k.many.frag # found chain 1qouA in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1qouA)E83 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1qouA)E83 Warning: unaligning (T0547)D480 (1qouA)W87 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :TR 1qouA 80 :YL T0547 477 :SIW 1qouA 84 :HLH T0547 481 :I 1qouA 88 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=47895 # 1dc1A.473.232 read from T0547.t2k.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)D480 (1dc1A)E240 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :TRSASIW 1dc1A 233 :EKYLLLG T0547 481 :I 1dc1A 241 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=47897 # 2a7bA.473.26 read from T0547.t2k.many.frag # found chain 2a7bA in training set T0547 473 :TRSASIWDI 2a7bA 729 :SVTVITIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=47898 # 1bob.473.211 read from T0547.t2k.many.frag # found chain 1bob in template set Warning: unaligning (T0547)R474 (1bob)F213 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :T 1bob 212 :K T0547 475 :SASIWDI 1bob 214 :RAKISQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=47900 # 1ga6A.473.253 read from T0547.t2k.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)W479 (1ga6A)P260 because C (cis) conformation "forbidden" or filtered. T0547 473 :TRSASI 1ga6A 254 :PGRRLL T0547 480 :DI 1ga6A 261 :DI Number of specific fragments extracted= 2 number of extra gaps= 1 total=47902 # 1pa1A.473.179 read from T0547.t2k.many.frag # found chain 1pa1A in template set T0547 473 :TRSASIWDI 1pa1A 668 :TREILHFHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=47903 # 1yvrA.473.459 read from T0547.t2k.many.frag # found chain 1yvrA in template set T0547 473 :TRSASIWDI 1yvrA 460 :AADIFIVFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=47904 # 1dmhA.473.147 read from T0547.t2k.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)T473 (1dmhA)L148 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1dmhA)N150 because T (delta_L) conformation "forbidden" or filtered. T0547 474 :R 1dmhA 149 :P T0547 476 :ASIWDI 1dmhA 151 :AKVEIW Number of specific fragments extracted= 2 number of extra gaps= 2 total=47906 1vjzA expands to /projects/compbio/data/pdb/1vjz.pdb.gz 1vjzA:Skipped atom 127, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 129, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 131, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 133, because occupancy 0.350 <= existing 0.650 in 1vjzA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 502, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 504, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 506, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 508, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 881, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 883, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 885, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 887, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 987, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 989, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 1074, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 1076, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 1088, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 1090, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 1092, because occupancy 0.350 <= existing 0.650 in 1vjzA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1294, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 1296, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 1550, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 1552, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 1554, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 1556, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 2105, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 2107, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 2109, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 2111, because occupancy 0.350 <= existing 0.650 in 1vjzA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2605, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 2607, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 2609, because occupancy 0.350 <= existing 0.650 in 1vjzA Skipped atom 2611, because occupancy 0.350 <= existing 0.650 in 1vjzA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vjzA.473.263 read from T0547.t2k.many.frag # adding 1vjzA to template set # found chain 1vjzA in template set Warning: unaligning (T0547)T473 (1vjzA)G252 because T (delta_L) conformation "forbidden" or filtered. T0547 474 :RSASIWDI 1vjzA 253 :IEVFCGEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=47907 # 2b5gA.473.50 read from T0547.t2k.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2b5gA)E58 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :T 2b5gA 51 :F T0547 475 :SASIW 2b5gA 53 :HCLVA T0547 481 :I 2b5gA 59 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=47910 # 1uv4A.473.210 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)D480 (1uv4A)G218 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :TRSASIW 1uv4A 211 :STYKIAY T0547 481 :I 1uv4A 219 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=47912 # 1jc9A.473.151 read from T0547.t2k.many.frag # found chain 1jc9A in template set T0547 473 :TRSASIWDI 1jc9A 152 :TRYAIYQDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=47913 # 1vkdA.473.290 read from T0547.t2k.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)R474 (1vkdA)N280 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1vkdA)V282 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1vkdA)V282 Warning: unaligning (T0547)S477 (1vkdA)F283 because D (zeta) conformation "forbidden" or filtered. T0547 473 :T 1vkdA 279 :P T0547 478 :IWDI 1vkdA 284 :PCAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47915 # 1ryaA.473.99 read from T0547.t2k.many.frag # found chain 1ryaA in training set Warning: unaligning (T0547)D480 (1ryaA)G107 because P (beta_P) conformation "forbidden" or filtered. T0547 473 :TRSASIW 1ryaA 100 :TTHYVVL T0547 481 :I 1ryaA 108 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=47917 # 1xv5A.473.266 read from T0547.t2k.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)D480 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xv5A)Y1275 T0547 473 :TRSASIW 1xv5A 1266 :NQPAQIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47918 1xipA expands to /projects/compbio/data/pdb/1xip.pdb.gz 1xipA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xipA.473.290 read from T0547.t2k.many.frag # adding 1xipA to template set # found chain 1xipA in template set Warning: unaligning (T0547)D480 (1xipA)A297 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :TRSASIW 1xipA 290 :DANVNVL T0547 481 :I 1xipA 298 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=47920 # 1q7lA.474.71 read from T0547.t2k.many.frag # found chain 1q7lA in training set Warning: unaligning (T0547)A476 (1q7lA)S74 because P (beta_P) conformation "forbidden" or filtered. T0547 474 :RS 1q7lA 72 :LS T0547 477 :SIWDIT 1q7lA 75 :ILLNSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=47922 # 1y08A.474.245 read from T0547.t2k.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)D480 (1y08A)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 474 :RSASIW 1y08A 262 :HVINLW T0547 481 :IT 1y08A 269 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=47924 # 1hl9A.474.317 read from T0547.t2k.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)R474 (1hl9A)G318 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1hl9A)N320 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1hl9A)N320 Warning: unaligning (T0547)W479 (1hl9A)L323 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T482 (1hl9A)G326 because D (zeta) conformation "forbidden" or filtered. T0547 477 :SI 1hl9A 321 :LL T0547 480 :DI 1hl9A 324 :NV Number of specific fragments extracted= 2 number of extra gaps= 3 total=47926 # 2biqA.474.135 read from T0547.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)R474 (2biqA)C229 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASIWDIT 2biqA 230 :TTIHYNYM Number of specific fragments extracted= 1 number of extra gaps= 1 total=47927 # 1pq7A.474.115 read from T0547.t2k.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)R474 (1pq7A)S131 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1pq7A)G137 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I481 (1pq7A)W138 because G (3-10) conformation "forbidden" or filtered. T0547 475 :SASIW 1pq7A 132 :SATVA T0547 482 :T 1pq7A 139 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=47929 # 1xszA.474.272 read from T0547.t2k.many.frag # found chain 1xszA in training set T0547 474 :RSASIWDIT 1xszA 271 :AQATIQVYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=47930 # 1x8qA.474.66 read from T0547.t2k.many.frag # found chain 1x8qA in training set T0547 474 :RSASIWDIT 1x8qA 67 :TFYDVSELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=47931 # 1pv5A.474.82 read from T0547.t2k.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)R474 (1pv5A)S80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1pv5A)I82 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :S 1pv5A 81 :G T0547 477 :SIWDIT 1pv5A 83 :LQFYIS Number of specific fragments extracted= 2 number of extra gaps= 2 total=47933 # 1uasA.474.325 read from T0547.t2k.many.frag # found chain 1uasA in training set T0547 474 :RSASIWDIT 1uasA 326 :VAVTARDLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=47934 # 1hf2A.474.157 read from T0547.t2k.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)D480 (1hf2A)D164 because D (zeta) conformation "forbidden" or filtered. T0547 474 :RSASIW 1hf2A 158 :AVVAAL T0547 481 :IT 1hf2A 165 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=47936 # 1kqfA.474.608 read from T0547.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)R474 (1kqfA)T609 because P (beta_P) conformation "forbidden" or filtered. T0547 475 :SASIWDIT 1kqfA 610 :EVFRLPST Number of specific fragments extracted= 1 number of extra gaps= 1 total=47937 # 1ylhA.474.325 read from T0547.t2k.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)R474 (1ylhA)R306 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1ylhA)N312 because L (left) conformation "forbidden" or filtered. T0547 475 :SASIW 1ylhA 307 :DALLE T0547 481 :IT 1ylhA 313 :VV Number of specific fragments extracted= 2 number of extra gaps= 2 total=47939 # 2a5zA.474.117 read from T0547.t2k.many.frag # found chain 2a5zA in template set T0547 474 :RSASIWDIT 2a5zA 118 :LEVTVYFKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=47940 # 1h1nA.474.191 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)S475 (1h1nA)I193 because P (beta_P) conformation "forbidden" or filtered. T0547 474 :R 1h1nA 192 :K T0547 476 :ASIWDIT 1h1nA 194 :IYEMHQY Number of specific fragments extracted= 2 number of extra gaps= 1 total=47942 # 1dc1A.474.233 read from T0547.t2k.many.frag # found chain 1dc1A in training set T0547 474 :RSASIWDIT 1dc1A 234 :KYLLLGELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=47943 # 1vkdA.474.291 read from T0547.t2k.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)R474 (1vkdA)N280 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1vkdA)V282 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1vkdA)V282 Warning: unaligning (T0547)W479 (1vkdA)C285 because G (3-10) conformation "forbidden" or filtered. T0547 477 :SI 1vkdA 283 :FP T0547 480 :DIT 1vkdA 286 :AAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=47945 # 1yvrA.474.460 read from T0547.t2k.many.frag # found chain 1yvrA in template set Warning: unaligning (T0547)A476 (1yvrA)I463 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1yvrA)F467 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)I481 (1yvrA)T468 because Y (epsilon') conformation "forbidden" or filtered. T0547 474 :RS 1yvrA 461 :AD T0547 477 :SIW 1yvrA 464 :FIV T0547 482 :T 1yvrA 469 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=47948 # 1jc9A.474.152 read from T0547.t2k.many.frag # found chain 1jc9A in template set Warning: unaligning (T0547)D480 (1jc9A)D159 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T482 (1jc9A)W161 because Y (epsilon') conformation "forbidden" or filtered. T0547 474 :RSASIW 1jc9A 153 :RYAIYQ T0547 481 :I 1jc9A 160 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=47950 # 2a7bA.474.27 read from T0547.t2k.many.frag # found chain 2a7bA in training set T0547 474 :RSASIWDIT 2a7bA 730 :VTVITIQAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=47951 # 1pa1A.474.180 read from T0547.t2k.many.frag # found chain 1pa1A in template set T0547 474 :RSASIWDIT 1pa1A 669 :REILHFHYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=47952 # 1ga6A.474.254 read from T0547.t2k.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)A476 (1ga6A)R257 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1ga6A)P260 because C (cis) conformation "forbidden" or filtered. T0547 474 :RS 1ga6A 255 :GR T0547 477 :SI 1ga6A 258 :LL T0547 480 :DIT 1ga6A 261 :DIS Number of specific fragments extracted= 3 number of extra gaps= 2 total=47955 # 1qouA.474.86 read from T0547.t2k.many.frag # found chain 1qouA in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1qouA)E83 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1qouA)E83 Warning: unaligning (T0547)D480 (1qouA)W87 because Y (epsilon') conformation "forbidden" or filtered. T0547 474 :R 1qouA 81 :L T0547 477 :SIW 1qouA 84 :HLH T0547 481 :IT 1qouA 88 :IV Number of specific fragments extracted= 3 number of extra gaps= 2 total=47958 # 1bob.474.212 read from T0547.t2k.many.frag # found chain 1bob in template set T0547 474 :RSASIWDIT 1bob 213 :FRAKISQFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=47959 # 2akaA.474.458 read from T0547.t2k.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)S475 (2akaA)F449 because Y (epsilon') conformation "forbidden" or filtered. T0547 474 :R 2akaA 448 :Y T0547 476 :ASIWDIT 2akaA 450 :IGVLDIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=47961 # 1uv4A.474.211 read from T0547.t2k.many.frag # found chain 1uv4A in training set T0547 474 :RSASIWDIT 1uv4A 212 :TYKIAYGRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=47962 # 1xv5A.474.267 read from T0547.t2k.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)S475 (1xv5A)P1268 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xv5A)Y1275 Warning: unaligning (T0547)T482 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xv5A)Y1275 T0547 474 :R 1xv5A 1267 :Q T0547 476 :ASIW 1xv5A 1269 :AQIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=47964 2c5uA expands to /projects/compbio/data/pdb/2c5u.pdb.gz 2c5uA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2c5uA.474.174 read from T0547.t2k.many.frag # adding 2c5uA to template set # found chain 2c5uA in template set Warning: unaligning (T0547)R474 (2c5uA)M174 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (2c5uA)K175 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2c5uA)N180 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIW 2c5uA 176 :IILL T0547 481 :IT 2c5uA 181 :VR Number of specific fragments extracted= 2 number of extra gaps= 2 total=47966 # 1dmhA.474.148 read from T0547.t2k.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)D480 (1dmhA)I155 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)T482 (1dmhA)H157 because Y (epsilon') conformation "forbidden" or filtered. T0547 474 :RSASIW 1dmhA 149 :PNAKVE T0547 481 :I 1dmhA 156 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=47968 # 2ar0A.474.374 read from T0547.t2k.many.frag # found chain 2ar0A in template set Warning: unaligning (T0547)I481 (2ar0A)L382 because G (3-10) conformation "forbidden" or filtered. T0547 474 :RSASIWD 2ar0A 375 :DDVWVYD T0547 482 :T 2ar0A 383 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=47970 # 1j8rA.474.34 read from T0547.t2k.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)R474 (1j8rA)G35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1j8rA)T40 because G (3-10) conformation "forbidden" or filtered. T0547 475 :SASI 1j8rA 36 :IATV T0547 480 :DIT 1j8rA 41 :WNQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=47972 # 1q7lA.475.72 read from T0547.t2k.many.frag # found chain 1q7lA in training set T0547 475 :SASIWDITC 1q7lA 73 :SSILLNSHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=47973 # 1y08A.475.246 read from T0547.t2k.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)D480 (1y08A)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASIW 1y08A 263 :VINLW T0547 481 :ITC 1y08A 269 :ADF Number of specific fragments extracted= 2 number of extra gaps= 1 total=47975 # 1hl9A.475.318 read from T0547.t2k.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1hl9A)N320 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1hl9A)N320 T0547 477 :SIWDITC 1hl9A 321 :LLLNVGP Number of specific fragments extracted= 1 number of extra gaps= 1 total=47976 # 2biqA.475.136 read from T0547.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)A476 (2biqA)T231 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :S 2biqA 230 :T T0547 477 :SIWDITC 2biqA 232 :IHYNYMC Number of specific fragments extracted= 2 number of extra gaps= 1 total=47978 # 1pq7A.475.116 read from T0547.t2k.many.frag # found chain 1pq7A in training set T0547 475 :SASIWDITC 1pq7A 132 :SATVAGWGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=47979 # 1xszA.475.273 read from T0547.t2k.many.frag # found chain 1xszA in training set T0547 475 :SASIWDITC 1xszA 272 :QATIQVYTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=47980 # 1x8qA.475.67 read from T0547.t2k.many.frag # found chain 1x8qA in training set T0547 475 :SASIWDITC 1x8qA 68 :FYDVSELQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=47981 # 1vkdA.475.292 read from T0547.t2k.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1vkdA)V282 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1vkdA)V282 T0547 477 :SIWDITC 1vkdA 283 :FPCAALC Number of specific fragments extracted= 1 number of extra gaps= 1 total=47982 # 1j8rA.475.35 read from T0547.t2k.many.frag # found chain 1j8rA in training set T0547 475 :SASIWDITC 1j8rA 36 :IATVTWNQC Number of specific fragments extracted= 1 number of extra gaps= 0 total=47983 # 1hf2A.475.158 read from T0547.t2k.many.frag # found chain 1hf2A in template set T0547 475 :SASIWDITC 1hf2A 159 :VVAALDLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=47984 # 1ylhA.475.326 read from T0547.t2k.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)S475 (1ylhA)D307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1ylhA)N312 because L (left) conformation "forbidden" or filtered. T0547 476 :ASIW 1ylhA 308 :ALLE T0547 481 :ITC 1ylhA 313 :VVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=47986 # 1pv5A.475.83 read from T0547.t2k.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)S475 (1pv5A)G81 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1pv5A)I82 because E (beta_S) conformation "forbidden" or filtered. T0547 477 :SIWDITC 1pv5A 83 :LQFYISV Number of specific fragments extracted= 1 number of extra gaps= 1 total=47987 # 1kqfA.475.609 read from T0547.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)C483 (1kqfA)C618 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASIWDIT 1kqfA 610 :EVFRLPST Number of specific fragments extracted= 1 number of extra gaps= 1 total=47988 # 1h1nA.475.192 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)C483 (1h1nA)L201 because G (3-10) conformation "forbidden" or filtered. T0547 475 :SASIWDIT 1h1nA 193 :IIYEMHQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=47989 # 1dc1A.475.234 read from T0547.t2k.many.frag # found chain 1dc1A in training set T0547 475 :SASIWDITC 1dc1A 235 :YLLLGELKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=47990 # 2a5zA.475.118 read from T0547.t2k.many.frag # found chain 2a5zA in template set T0547 475 :SASIWDITC 2a5zA 119 :EVTVYFKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=47991 # 1uasA.475.326 read from T0547.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)A476 (1uasA)V328 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :S 1uasA 327 :A T0547 477 :SIWDITC 1uasA 329 :TARDLWA Number of specific fragments extracted= 2 number of extra gaps= 1 total=47993 # 1iicA.475.313 read from T0547.t2k.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)A476 (1iicA)G348 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1iicA)Y351 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :S 1iicA 347 :I T0547 477 :SI 1iicA 349 :YL T0547 480 :DITC 1iicA 352 :YYAT Number of specific fragments extracted= 3 number of extra gaps= 2 total=47996 # 1jc9A.475.153 read from T0547.t2k.many.frag # found chain 1jc9A in template set T0547 475 :SASIWDITC 1jc9A 154 :YAIYQDFWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=47997 # 1yvrA.475.461 read from T0547.t2k.many.frag # found chain 1yvrA in template set T0547 475 :SASIWDITC 1yvrA 462 :DIFIVFTDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=47998 # 1uv4A.475.212 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)D480 (1uv4A)G218 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASIW 1uv4A 213 :YKIAY T0547 481 :ITC 1uv4A 219 :RSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=48000 # 1pguA.475.115 read from T0547.t2k.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)W479 (1pguA)S120 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1pguA)D121 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASI 1pguA 116 :AGPI T0547 481 :ITC 1pguA 122 :ISW Number of specific fragments extracted= 2 number of extra gaps= 1 total=48002 # 2a7bA.475.28 read from T0547.t2k.many.frag # found chain 2a7bA in training set T0547 475 :SASIWDITC 2a7bA 731 :TVITIQASN Number of specific fragments extracted= 1 number of extra gaps= 0 total=48003 # 2c5uA.475.175 read from T0547.t2k.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)S475 (2c5uA)K175 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2c5uA)N180 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIW 2c5uA 176 :IILL T0547 481 :ITC 2c5uA 181 :VRE Number of specific fragments extracted= 2 number of extra gaps= 2 total=48005 # 1kmtA.475.7 read from T0547.t2k.many.frag # found chain 1kmtA in training set T0547 475 :SASIWDITC 1kmtA 71 :VVTGLTLVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=48006 # 1vjzA.475.265 read from T0547.t2k.many.frag # found chain 1vjzA in template set T0547 475 :SASIWDITC 1vjzA 254 :EVFCGEMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48007 # 2akaA.475.459 read from T0547.t2k.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)S475 (2akaA)F449 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIWDITC 2akaA 450 :IGVLDISG Number of specific fragments extracted= 1 number of extra gaps= 1 total=48008 # 3pviA.475.65 read from T0547.t2k.many.frag # found chain 3pviA in training set Warning: unaligning (T0547)S475 (3pviA)E66 because P (beta_P) conformation "forbidden" or filtered. T0547 476 :ASIWDITC 3pviA 67 :YELKSINI Number of specific fragments extracted= 1 number of extra gaps= 1 total=48009 # 2b61A.475.313 read from T0547.t2k.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)S475 (2b61A)R295 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (2b61A)Y296 because E (beta_S) conformation "forbidden" or filtered. T0547 477 :SIWDITC 2b61A 297 :TLVSVTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=48010 # 1dmhA.475.149 read from T0547.t2k.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)S475 (1dmhA)N150 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1dmhA)I155 because E (beta_S) conformation "forbidden" or filtered. T0547 476 :ASIW 1dmhA 151 :AKVE T0547 481 :ITC 1dmhA 156 :WHA Number of specific fragments extracted= 2 number of extra gaps= 2 total=48012 # 1q7lA.476.73 read from T0547.t2k.many.frag # found chain 1q7lA in training set Warning: unaligning (T0547)W479 (1q7lA)L77 because D (zeta) conformation "forbidden" or filtered. T0547 476 :ASI 1q7lA 74 :SIL T0547 480 :DITCD 1q7lA 78 :NSHTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=48014 # 1hl9A.476.319 read from T0547.t2k.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1hl9A)N320 Warning: unaligning (T0547)S477 (1hl9A)L321 because P (beta_P) conformation "forbidden" or filtered. T0547 478 :IWDITCD 1hl9A 322 :LLNVGPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=48015 # 1y08A.476.247 read from T0547.t2k.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)D480 (1y08A)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIW 1y08A 264 :INLW T0547 481 :ITCD 1y08A 269 :ADFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=48017 # 1j8rA.476.36 read from T0547.t2k.many.frag # found chain 1j8rA in training set T0547 476 :ASIWDITCD 1j8rA 37 :ATVTWNQCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=48018 # 2biqA.476.137 read from T0547.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)C483 (2biqA)C238 because E (beta_S) conformation "forbidden" or filtered. T0547 476 :ASIWDIT 2biqA 231 :TIHYNYM T0547 484 :D 2biqA 239 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=48020 # 1vkdA.476.293 read from T0547.t2k.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1vkdA)V282 T0547 477 :SIWDITCD 1vkdA 283 :FPCAALCD Number of specific fragments extracted= 1 number of extra gaps= 1 total=48021 # 1pq7A.476.117 read from T0547.t2k.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)D480 (1pq7A)G137 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIW 1pq7A 133 :ATVA T0547 481 :ITCD 1pq7A 138 :WGAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=48023 # 1xszA.476.274 read from T0547.t2k.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)W479 (1xszA)Q276 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (1xszA)N281 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASI 1xszA 273 :ATI T0547 480 :DITC 1xszA 277 :VYTP Number of specific fragments extracted= 2 number of extra gaps= 2 total=48025 # 1x8qA.476.68 read from T0547.t2k.many.frag # found chain 1x8qA in training set T0547 476 :ASIWDITCD 1x8qA 69 :YDVSELQVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=48026 # 1h1nA.476.193 read from T0547.t2k.many.frag # found chain 1h1nA in training set T0547 476 :ASIWDITCD 1h1nA 194 :IYEMHQYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48027 # 1iicA.476.314 read from T0547.t2k.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)A476 (1iicA)G348 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1iicA)Y351 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T482 (1iicA)A354 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)C483 (1iicA)T355 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SI 1iicA 349 :YL T0547 480 :DI 1iicA 352 :YY T0547 484 :D 1iicA 356 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=48030 # 1pguA.476.116 read from T0547.t2k.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)D480 (1pguA)D121 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIW 1pguA 117 :GPIS T0547 481 :ITCD 1pguA 122 :ISWD Number of specific fragments extracted= 2 number of extra gaps= 1 total=48032 # 1pv5A.476.84 read from T0547.t2k.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)A476 (1pv5A)I82 because E (beta_S) conformation "forbidden" or filtered. T0547 477 :SIWDITCD 1pv5A 83 :LQFYISVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=48033 # 1ylhA.476.327 read from T0547.t2k.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)D480 (1ylhA)N312 because L (left) conformation "forbidden" or filtered. T0547 476 :ASIW 1ylhA 308 :ALLE T0547 481 :ITCD 1ylhA 313 :VVVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=48035 # 1kqfA.476.610 read from T0547.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)C483 (1kqfA)C618 because E (beta_S) conformation "forbidden" or filtered. T0547 476 :ASIWDIT 1kqfA 611 :VFRLPST T0547 484 :D 1kqfA 619 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=48037 # 1hf2A.476.159 read from T0547.t2k.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)D480 (1hf2A)D164 because D (zeta) conformation "forbidden" or filtered. T0547 476 :ASIW 1hf2A 160 :VAAL T0547 481 :ITCD 1hf2A 165 :LQTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=48039 # 1uv4A.476.213 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)D480 (1uv4A)G218 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIW 1uv4A 214 :KIAY T0547 481 :ITCD 1uv4A 219 :RSKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=48041 # 1kmtA.476.8 read from T0547.t2k.many.frag # found chain 1kmtA in training set Warning: unaligning (T0547)C483 (1kmtA)C79 because D (zeta) conformation "forbidden" or filtered. T0547 476 :ASIWDIT 1kmtA 72 :VTGLTLV T0547 484 :D 1kmtA 80 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=48043 # 1jc9A.476.154 read from T0547.t2k.many.frag # found chain 1jc9A in template set T0547 476 :ASIWDITCD 1jc9A 155 :AIYQDFWIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=48044 # 1yvrA.476.462 read from T0547.t2k.many.frag # found chain 1yvrA in template set Warning: unaligning (T0547)C483 (1yvrA)C470 because L (left) conformation "forbidden" or filtered. T0547 476 :ASIWDIT 1yvrA 463 :IFIVFTD T0547 484 :D 1yvrA 471 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=48046 1dmlA expands to /projects/compbio/data/pdb/1dml.pdb.gz 1dmlA:# 1dmlA.476.121 read from T0547.t2k.many.frag # adding 1dmlA to template set # found chain 1dmlA in template set T0547 476 :ASIWDITCD 1dmlA 122 :RVELAITGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=48047 # 3pviA.476.66 read from T0547.t2k.many.frag # found chain 3pviA in training set T0547 476 :ASIWDITCD 3pviA 67 :YELKSINID Number of specific fragments extracted= 1 number of extra gaps= 0 total=48048 # 1dc1A.476.235 read from T0547.t2k.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)D480 (1dc1A)E240 because E (beta_S) conformation "forbidden" or filtered. T0547 476 :ASIW 1dc1A 236 :LLLG T0547 481 :ITCD 1dc1A 241 :LKGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48050 # 2a5zA.476.119 read from T0547.t2k.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)D480 (2a5zA)F124 because E (beta_S) conformation "forbidden" or filtered. T0547 476 :ASIW 2a5zA 120 :VTVY T0547 481 :ITCD 2a5zA 125 :KTPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=48052 # 1vjzA.476.266 read from T0547.t2k.many.frag # found chain 1vjzA in template set Warning: unaligning (T0547)T482 (1vjzA)G261 because S (epsilon) conformation "forbidden" or filtered. T0547 476 :ASIWDI 1vjzA 255 :VFCGEM T0547 483 :CD 1vjzA 262 :AY Number of specific fragments extracted= 2 number of extra gaps= 1 total=48054 # 2a7bA.476.29 read from T0547.t2k.many.frag # found chain 2a7bA in training set T0547 476 :ASIWDITCD 2a7bA 732 :VITIQASNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=48055 # 1rp0A.476.179 read from T0547.t2k.many.frag # found chain 1rp0A in training set Warning: unaligning (T0547)D484 (1rp0A)G188 because S (epsilon) conformation "forbidden" or filtered. T0547 476 :ASIWDITC 1rp0A 180 :AKIVVSSC Number of specific fragments extracted= 1 number of extra gaps= 1 total=48056 # 1dmhA.476.150 read from T0547.t2k.many.frag # found chain 1dmhA in training set T0547 476 :ASIWDITCD 1dmhA 151 :AKVEIWHAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=48057 # 2b61A.476.314 read from T0547.t2k.many.frag # found chain 2b61A in training set T0547 476 :ASIWDITCD 2b61A 296 :YTLVSVTTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48058 # 1si6X.476.128 read from T0547.t2k.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1si6X)T133 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1si6X)T133 T0547 476 :ASI 1si6X 129 :FSF T0547 481 :ITCD 1si6X 134 :SRMS Number of specific fragments extracted= 2 number of extra gaps= 1 total=48060 # 1j8rA.477.37 read from T0547.t2k.many.frag # found chain 1j8rA in training set T0547 477 :SIWDITCDS 1j8rA 38 :TVTWNQCNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=48061 # 1y08A.477.248 read from T0547.t2k.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)D480 (1y08A)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 1y08A 265 :NLW T0547 481 :ITCDS 1y08A 269 :ADFDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=48063 # 1hl9A.477.320 read from T0547.t2k.many.frag # found chain 1hl9A in template set T0547 477 :SIWDITCDS 1hl9A 321 :LLLNVGPKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=48064 # 1q7lA.477.74 read from T0547.t2k.many.frag # found chain 1q7lA in training set Warning: unaligning (T0547)I481 (1q7lA)S79 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIWD 1q7lA 75 :ILLN T0547 482 :TCDS 1q7lA 80 :HTDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=48066 # 2biqA.477.138 read from T0547.t2k.many.frag # found chain 2biqA in template set T0547 477 :SIWDITCDS 2biqA 232 :IHYNYMCYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=48067 # 1vkdA.477.294 read from T0547.t2k.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)D480 (1vkdA)A286 because E (beta_S) conformation "forbidden" or filtered. T0547 477 :SIW 1vkdA 283 :FPC T0547 481 :ITCDS 1vkdA 287 :ALCDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=48069 # 1h1nA.477.194 read from T0547.t2k.many.frag # found chain 1h1nA in training set T0547 477 :SIWDITCDS 1h1nA 195 :YEMHQYLDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=48070 # 1iicA.477.315 read from T0547.t2k.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)W479 (1iicA)Y351 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1iicA)Y352 because P (beta_P) conformation "forbidden" or filtered. T0547 477 :SI 1iicA 349 :YL T0547 481 :ITCDS 1iicA 353 :YATDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=48072 # 1pq7A.477.118 read from T0547.t2k.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)D480 (1pq7A)G137 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 1pq7A 134 :TVA T0547 481 :ITCDS 1pq7A 138 :WGATS Number of specific fragments extracted= 2 number of extra gaps= 1 total=48074 # 1pguA.477.117 read from T0547.t2k.many.frag # found chain 1pguA in template set T0547 477 :SIWDITCDS 1pguA 118 :PISDISWDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=48075 # 1x8qA.477.69 read from T0547.t2k.many.frag # found chain 1x8qA in training set T0547 477 :SIWDITCDS 1x8qA 70 :DVSELQVES Number of specific fragments extracted= 1 number of extra gaps= 0 total=48076 # 1ylhA.477.328 read from T0547.t2k.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)D480 (1ylhA)N312 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (1ylhA)R316 because P (beta_P) conformation "forbidden" or filtered. T0547 477 :SIW 1ylhA 309 :LLE T0547 481 :ITC 1ylhA 313 :VVV T0547 485 :S 1ylhA 317 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=48079 # 1pv5A.477.85 read from T0547.t2k.many.frag # found chain 1pv5A in training set T0547 477 :SIWDITCDS 1pv5A 83 :LQFYISVHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48080 # 1rp0A.477.180 read from T0547.t2k.many.frag # found chain 1rp0A in training set Warning: unaligning (T0547)D484 (1rp0A)G188 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S485 (1rp0A)H189 because G (3-10) conformation "forbidden" or filtered. T0547 477 :SIWDITC 1rp0A 181 :KIVVSSC Number of specific fragments extracted= 1 number of extra gaps= 1 total=48081 # 1xszA.477.275 read from T0547.t2k.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)D480 (1xszA)V277 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (1xszA)N281 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 1xszA 274 :TIQ T0547 481 :ITC 1xszA 278 :YTP T0547 485 :S 1xszA 282 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=48084 # 1jc9A.477.155 read from T0547.t2k.many.frag # found chain 1jc9A in template set Warning: unaligning (T0547)D480 (1jc9A)D159 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (1jc9A)E163 because P (beta_P) conformation "forbidden" or filtered. T0547 477 :SIW 1jc9A 156 :IYQ T0547 481 :ITC 1jc9A 160 :FWI T0547 485 :S 1jc9A 164 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=48087 # 1tfe.477.17 read from T0547.t2k.many.frag # found chain 1tfe in training set Warning: unaligning (T0547)D480 (1tfe)E75 because P (beta_P) conformation "forbidden" or filtered. T0547 477 :SIW 1tfe 72 :VLV T0547 481 :ITCDS 1tfe 76 :LNCET Number of specific fragments extracted= 2 number of extra gaps= 1 total=48089 # 1kmtA.477.9 read from T0547.t2k.many.frag # found chain 1kmtA in training set T0547 477 :SIWDITCDS 1kmtA 73 :TGLTLVCSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=48090 # 1dmhA.477.151 read from T0547.t2k.many.frag # found chain 1dmhA in training set T0547 477 :SIWDITCDS 1dmhA 152 :KVEIWHANT Number of specific fragments extracted= 1 number of extra gaps= 0 total=48091 # 1dmlA.477.122 read from T0547.t2k.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)C483 (1dmlA)G129 because S (epsilon) conformation "forbidden" or filtered. T0547 477 :SIWDIT 1dmlA 123 :VELAIT T0547 484 :DS 1dmlA 130 :QA Number of specific fragments extracted= 2 number of extra gaps= 1 total=48093 # 1uv4A.477.214 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)D480 (1uv4A)G218 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 1uv4A 215 :IAY T0547 481 :ITCDS 1uv4A 219 :RSKSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=48095 # 1vpsA.477.141 read from T0547.t2k.many.frag # found chain 1vpsA in template set T0547 477 :SIWDITCDS 1vpsA 173 :DLQGLVTDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48096 # 3pviA.477.67 read from T0547.t2k.many.frag # found chain 3pviA in training set T0547 477 :SIWDITCDS 3pviA 68 :ELKSINIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48097 # 1w0pA.477.404 read from T0547.t2k.many.frag # found chain 1w0pA in training set T0547 477 :SIWDITCDS 1w0pA 405 :YVVTLSIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=48098 # 1si6X.477.129 read from T0547.t2k.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1si6X)T133 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1si6X)T133 Warning: unaligning (T0547)I481 (1si6X)S134 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (1si6X)S137 because P (beta_P) conformation "forbidden" or filtered. T0547 477 :SI 1si6X 130 :SF T0547 482 :TC 1si6X 135 :RM T0547 485 :S 1si6X 138 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=48101 # 1kqfA.477.611 read from T0547.t2k.many.frag # found chain 1kqfA in training set T0547 477 :SIWDITCDS 1kqfA 612 :FRLPSTCFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48102 # 2a7bA.477.30 read from T0547.t2k.many.frag # found chain 2a7bA in training set T0547 477 :SIWDITCDS 2a7bA 733 :ITIQASNST Number of specific fragments extracted= 1 number of extra gaps= 0 total=48103 # 1vjzA.477.267 read from T0547.t2k.many.frag # found chain 1vjzA in template set Warning: unaligning (T0547)D484 (1vjzA)Y263 because P (beta_P) conformation "forbidden" or filtered. T0547 477 :SIWDITC 1vjzA 256 :FCGEMGA T0547 485 :S 1vjzA 264 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=48105 1mspA expands to /projects/compbio/data/pdb/1msp.pdb.gz 1mspA:# 1mspA.477.88 read from T0547.t2k.many.frag # adding 1mspA to template set # found chain 1mspA in template set T0547 477 :SIWDITCDS 1mspA 89 :ITIEWTNTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=48106 # 2bjfA.477.276 read from T0547.t2k.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)D480 (2bjfA)S280 because E (beta_S) conformation "forbidden" or filtered. T0547 477 :SIW 2bjfA 277 :QYT T0547 481 :ITCDS 2bjfA 281 :CMCLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=48108 # 1j8rA.478.38 read from T0547.t2k.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)W479 (1j8rA)T40 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1j8rA)W41 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :I 1j8rA 39 :V T0547 481 :ITCDSD 1j8rA 42 :NQCNGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=48110 # 1y08A.478.249 read from T0547.t2k.many.frag # found chain 1y08A in template set T0547 478 :IWDITCDSD 1y08A 266 :LWGADFDSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=48111 # 1vkdA.478.295 read from T0547.t2k.many.frag # found chain 1vkdA in template set T0547 478 :IWDITCDSD 1vkdA 284 :PCAALCDAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48112 # 1hl9A.478.321 read from T0547.t2k.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)T482 (1hl9A)G326 because D (zeta) conformation "forbidden" or filtered. T0547 478 :IWDI 1hl9A 322 :LLNV T0547 483 :CDSD 1hl9A 327 :PKGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=48114 # 1h1nA.478.195 read from T0547.t2k.many.frag # found chain 1h1nA in training set T0547 478 :IWDITCDSD 1h1nA 196 :EMHQYLDSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48115 # 2biqA.478.139 read from T0547.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)D480 (2biqA)N235 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)C483 (2biqA)C238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (2biqA)Y239 because P (beta_P) conformation "forbidden" or filtered. T0547 478 :IW 2biqA 233 :HY T0547 481 :IT 2biqA 236 :YM T0547 485 :SD 2biqA 240 :SS Number of specific fragments extracted= 3 number of extra gaps= 2 total=48118 # 1pguA.478.118 read from T0547.t2k.many.frag # found chain 1pguA in template set T0547 478 :IWDITCDSD 1pguA 119 :ISDISWDFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=48119 # 1rp0A.478.181 read from T0547.t2k.many.frag # found chain 1rp0A in training set Warning: unaligning (T0547)C483 (1rp0A)C187 because G (3-10) conformation "forbidden" or filtered. T0547 478 :IWDIT 1rp0A 182 :IVVSS T0547 484 :DSD 1rp0A 188 :GHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=48121 # 1q7lA.478.75 read from T0547.t2k.many.frag # found chain 1q7lA in training set Warning: unaligning (T0547)D480 (1q7lA)N78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)C483 (1q7lA)T81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (1q7lA)V84 because P (beta_P) conformation "forbidden" or filtered. T0547 478 :IW 1q7lA 76 :LL T0547 481 :IT 1q7lA 79 :SH T0547 484 :DS 1q7lA 82 :DV Number of specific fragments extracted= 3 number of extra gaps= 3 total=48124 # 1w0pA.478.405 read from T0547.t2k.many.frag # found chain 1w0pA in training set T0547 478 :IWDITCDSD 1w0pA 406 :VVTLSIDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=48125 # 1dmhA.478.152 read from T0547.t2k.many.frag # found chain 1dmhA in training set T0547 478 :IWDITCDSD 1dmhA 153 :VEIWHANTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=48126 # 1vlyA.478.69 read from T0547.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)I478 (1vlyA)L58 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)C483 (1vlyA)C63 because E (beta_S) conformation "forbidden" or filtered. T0547 479 :WDIT 1vlyA 59 :LAAH T0547 484 :DSD 1vlyA 64 :DAK Number of specific fragments extracted= 2 number of extra gaps= 2 total=48128 # 1kt6A.478.41 read from T0547.t2k.many.frag # found chain 1kt6A in training set T0547 478 :IWDITCDSD 1kt6A 42 :VAEFSVDEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=48129 # 1tfe.478.18 read from T0547.t2k.many.frag # found chain 1tfe in training set T0547 478 :IWDITCDSD 1tfe 73 :LVELNCETD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48130 # 1xksA.478.164 read from T0547.t2k.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)D480 (1xksA)R231 because P (beta_P) conformation "forbidden" or filtered. T0547 478 :IW 1xksA 229 :LI T0547 481 :ITCDSD 1xksA 232 :LIPESS Number of specific fragments extracted= 2 number of extra gaps= 1 total=48132 # 1pq7A.478.119 read from T0547.t2k.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)D480 (1pq7A)G137 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IW 1pq7A 135 :VA T0547 481 :ITCDSD 1pq7A 138 :WGATSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=48134 # 1ylhA.478.329 read from T0547.t2k.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)D480 (1ylhA)N312 because L (left) conformation "forbidden" or filtered. T0547 478 :IW 1ylhA 310 :LE T0547 481 :ITCDSD 1ylhA 313 :VVVRAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=48136 # 1mspA.478.89 read from T0547.t2k.many.frag # found chain 1mspA in template set Warning: unaligning (T0547)I481 (1mspA)W93 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IWD 1mspA 90 :TIE T0547 482 :TCDSD 1mspA 94 :TNTPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=48138 # 1x8qA.478.70 read from T0547.t2k.many.frag # found chain 1x8qA in training set Warning: unaligning (T0547)D480 (1x8qA)E73 because P (beta_P) conformation "forbidden" or filtered. T0547 478 :IW 1x8qA 71 :VS T0547 481 :ITCDSD 1x8qA 74 :LQVESL Number of specific fragments extracted= 2 number of extra gaps= 1 total=48140 # 1iicA.478.316 read from T0547.t2k.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)W479 (1iicA)Y351 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1iicA)Y352 because P (beta_P) conformation "forbidden" or filtered. T0547 478 :I 1iicA 350 :L T0547 481 :ITCDSD 1iicA 353 :YATDAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=48142 # 1dmlA.478.123 read from T0547.t2k.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)C483 (1dmlA)G129 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (1dmlA)P132 because C (cis) conformation "forbidden" or filtered. T0547 478 :IWDIT 1dmlA 124 :ELAIT T0547 484 :DS 1dmlA 130 :QA Number of specific fragments extracted= 2 number of extra gaps= 2 total=48144 # 1kmtA.478.10 read from T0547.t2k.many.frag # found chain 1kmtA in training set Warning: unaligning (T0547)I478 (1kmtA)G74 because Y (epsilon') conformation "forbidden" or filtered. T0547 479 :WDITCDSD 1kmtA 75 :LTLVCSSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=48145 2b4wA expands to /projects/compbio/data/pdb/2b4w.pdb.gz 2b4wA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2b4wA.478.265 read from T0547.t2k.many.frag # adding 2b4wA to template set # found chain 2b4wA in template set Warning: unaligning (T0547)D480 (2b4wA)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IW 2b4wA 266 :AS T0547 481 :ITCDSD 2b4wA 269 :IVMRSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=48147 # 1pv5A.478.86 read from T0547.t2k.many.frag # found chain 1pv5A in training set T0547 478 :IWDITCDSD 1pv5A 84 :QFYISVHDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48148 # 2bjfA.478.277 read from T0547.t2k.many.frag # found chain 2bjfA in training set T0547 478 :IWDITCDSD 2bjfA 278 :YTSCMCLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=48149 # 1svpA.478.136 read from T0547.t2k.many.frag # found chain 1svpA in template set T0547 478 :IWDITCDSD 1svpA 242 :LSVVTWNSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=48150 # 1vpsA.478.142 read from T0547.t2k.many.frag # found chain 1vpsA in template set T0547 478 :IWDITCDSD 1vpsA 174 :LQGLVTDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=48151 # 1pmi.478.359 read from T0547.t2k.many.frag # found chain 1pmi in training set T0547 478 :IWDITCDSD 1pmi 361 :LQTIFDKSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=48152 # 2a13A.478.78 read from T0547.t2k.many.frag # found chain 2a13A in training set Warning: unaligning (T0547)I478 (2a13A)S79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (2a13A)G80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (2a13A)R85 because E (beta_S) conformation "forbidden" or filtered. T0547 480 :DITC 2a13A 81 :YFRP T0547 485 :SD 2a13A 86 :PD Number of specific fragments extracted= 2 number of extra gaps= 2 total=48154 # 1si6X.478.130 read from T0547.t2k.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1si6X)T133 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1si6X)T133 Warning: unaligning (T0547)I481 (1si6X)S134 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :I 1si6X 131 :F T0547 482 :TCDSD 1si6X 135 :RMSDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=48156 # 1j8rA.479.39 read from T0547.t2k.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)D480 (1j8rA)W41 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I481 (1j8rA)N42 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)C483 (1j8rA)C44 because E (beta_S) conformation "forbidden" or filtered. T0547 479 :W 1j8rA 40 :T T0547 482 :T 1j8rA 43 :Q T0547 484 :DSDG 1j8rA 45 :NGPE Number of specific fragments extracted= 3 number of extra gaps= 2 total=48159 # 1y08A.479.250 read from T0547.t2k.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)D480 (1y08A)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 479 :W 1y08A 267 :W T0547 481 :ITCDSDG 1y08A 269 :ADFDSNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48161 # 1vkdA.479.296 read from T0547.t2k.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)C483 (1vkdA)C289 because E (beta_S) conformation "forbidden" or filtered. T0547 479 :WDIT 1vkdA 285 :CAAL T0547 484 :DSDG 1vkdA 290 :DADT Number of specific fragments extracted= 2 number of extra gaps= 1 total=48163 # 1hl9A.479.322 read from T0547.t2k.many.frag # found chain 1hl9A in template set T0547 479 :WDITCDSDG 1hl9A 323 :LNVGPKGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=48164 # 1h1nA.479.196 read from T0547.t2k.many.frag # found chain 1h1nA in training set T0547 479 :WDITCDSDG 1h1nA 197 :MHQYLDSDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=48165 # 1xksA.479.165 read from T0547.t2k.many.frag # found chain 1xksA in template set T0547 479 :WDITCDSDG 1xksA 230 :IRLIPESSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=48166 # 1vlyA.479.70 read from T0547.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)D480 (1vlyA)A60 because P (beta_P) conformation "forbidden" or filtered. T0547 479 :W 1vlyA 59 :L T0547 481 :ITCDSDG 1vlyA 61 :AHCDAKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48168 # 1pguA.479.119 read from T0547.t2k.many.frag # found chain 1pguA in template set T0547 479 :WDITCDSDG 1pguA 120 :SDISWDFEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=48169 # 2b4wA.479.266 read from T0547.t2k.many.frag # found chain 2b4wA in template set Warning: unaligning (T0547)D480 (2b4wA)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 479 :W 2b4wA 267 :S T0547 481 :ITCDSDG 2b4wA 269 :IVMRSDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48171 # 1svpA.479.137 read from T0547.t2k.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)D484 (1svpA)N248 because P (beta_P) conformation "forbidden" or filtered. T0547 479 :WDITC 1svpA 243 :SVVTW T0547 485 :SDG 1svpA 249 :SKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48173 # 1w0pA.479.406 read from T0547.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)T482 (1w0pA)S410 because Y (epsilon') conformation "forbidden" or filtered. T0547 479 :WDI 1w0pA 407 :VTL T0547 483 :CDSDG 1w0pA 411 :IDESG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48175 # 1kt6A.479.42 read from T0547.t2k.many.frag # found chain 1kt6A in training set T0547 479 :WDITCDSDG 1kt6A 43 :AEFSVDENG Number of specific fragments extracted= 1 number of extra gaps= 0 total=48176 # 1ylhA.479.330 read from T0547.t2k.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)D480 (1ylhA)N312 because L (left) conformation "forbidden" or filtered. T0547 479 :W 1ylhA 311 :E T0547 481 :ITCDSDG 1ylhA 313 :VVVRADG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48178 # 1c4rA.479.104 read from T0547.t2k.many.frag # found chain 1c4rA in template set T0547 479 :WDITCDSDG 1c4rA 185 :ATLQVDSWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=48179 # 1dmhA.479.153 read from T0547.t2k.many.frag # found chain 1dmhA in training set T0547 479 :WDITCDSDG 1dmhA 154 :EIWHANTKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=48180 # 1rp0A.479.182 read from T0547.t2k.many.frag # found chain 1rp0A in training set Warning: unaligning (T0547)T482 (1rp0A)S186 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (1rp0A)G188 because S (epsilon) conformation "forbidden" or filtered. T0547 479 :WDI 1rp0A 183 :VVS T0547 483 :C 1rp0A 187 :C T0547 485 :SDG 1rp0A 189 :HDG Number of specific fragments extracted= 3 number of extra gaps= 2 total=48183 # 1mspA.479.90 read from T0547.t2k.many.frag # found chain 1mspA in template set Warning: unaligning (T0547)D480 (1mspA)E92 because E (beta_S) conformation "forbidden" or filtered. T0547 479 :W 1mspA 91 :I T0547 481 :ITCDSDG 1mspA 93 :WTNTPDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48185 # 1ntyA.479.235 read from T0547.t2k.many.frag # found chain 1ntyA in training set Warning: unaligning (T0547)W479 (1ntyA)S1460 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1ntyA)K1461 because E (beta_S) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 1ntyA 1462 :EVKDSSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=48186 # 1rg8A.479.68 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)D480 (1rg8A)Y64 because P (beta_P) conformation "forbidden" or filtered. T0547 479 :W 1rg8A 63 :Q T0547 481 :ITCDSDG 1rg8A 65 :LAMDTDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48188 # 1dmhA.479.136 read from T0547.t2k.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)W479 (1dmhA)H137 because Y (epsilon') conformation "forbidden" or filtered. T0547 480 :DITCDSDG 1dmhA 138 :GTIFDADG Number of specific fragments extracted= 1 number of extra gaps= 1 total=48189 # 1q7lA.479.76 read from T0547.t2k.many.frag # found chain 1q7lA in training set Warning: unaligning (T0547)D480 (1q7lA)N78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I481 (1q7lA)S79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (1q7lA)V84 because P (beta_P) conformation "forbidden" or filtered. T0547 479 :W 1q7lA 77 :L T0547 482 :TCDS 1q7lA 80 :HTDV T0547 487 :G 1q7lA 85 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=48192 # 2biqA.479.140 read from T0547.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)G487 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2biqA)G245 T0547 479 :WDITCDSD 2biqA 234 :YNYMCYSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=48193 # 1omhA.479.166 read from T0547.t2k.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)D480 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1omhA)T170 Warning: unaligning (T0547)T482 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1omhA)T170 T0547 479 :W 1omhA 167 :L T0547 483 :CDSDG 1omhA 171 :KRSDG Number of specific fragments extracted= 2 number of extra gaps= 0 total=48195 # 1x8qA.479.71 read from T0547.t2k.many.frag # found chain 1x8qA in training set Warning: unaligning (T0547)D486 (1x8qA)L79 because P (beta_P) conformation "forbidden" or filtered. T0547 479 :WDITCDS 1x8qA 72 :SELQVES T0547 487 :G 1x8qA 80 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=48197 1dyoA expands to /projects/compbio/data/pdb/1dyo.pdb.gz 1dyoA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1dyoA.479.90 read from T0547.t2k.many.frag # adding 1dyoA to template set # found chain 1dyoA in template set Warning: unaligning (T0547)T482 (1dyoA)Y94 because Y (epsilon') conformation "forbidden" or filtered. T0547 479 :WDI 1dyoA 91 :KLQ T0547 483 :CDSDG 1dyoA 95 :VDGSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48199 # 2bjfA.479.278 read from T0547.t2k.many.frag # found chain 2bjfA in training set T0547 479 :WDITCDSDG 2bjfA 279 :TSCMCLEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=48200 # 1tfe.479.19 read from T0547.t2k.many.frag # found chain 1tfe in training set T0547 479 :WDITCDSDG 1tfe 74 :VELNCETDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=48201 # 1oboA.479.138 read from T0547.t2k.many.frag # found chain 1oboA in training set Warning: unaligning (T0547)D480 (1oboA)G1140 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G487 (1oboA)N1147 because G (3-10) conformation "forbidden" or filtered. T0547 479 :W 1oboA 1139 :V T0547 481 :ITCDSD 1oboA 1141 :LALDED Number of specific fragments extracted= 2 number of extra gaps= 2 total=48203 # 1pq7A.479.120 read from T0547.t2k.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)D480 (1pq7A)G137 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I481 (1pq7A)W138 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (1pq7A)E143 because P (beta_P) conformation "forbidden" or filtered. T0547 479 :W 1pq7A 136 :A T0547 482 :TCDS 1pq7A 139 :GATS T0547 487 :G 1pq7A 144 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=48206 # 1kmtA.479.11 read from T0547.t2k.many.frag # found chain 1kmtA in training set T0547 479 :WDITCDSDG 1kmtA 75 :LTLVCSSAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=48207 # 1xksA.480.166 read from T0547.t2k.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)D484 (1xksA)E235 because P (beta_P) conformation "forbidden" or filtered. T0547 480 :DITC 1xksA 231 :RLIP T0547 485 :SDGE 1xksA 236 :SSGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=48209 # 1vkdA.480.297 read from T0547.t2k.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)D480 (1vkdA)A286 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1vkdA)G294 because T (delta_L) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 1vkdA 287 :ALCDADT Number of specific fragments extracted= 1 number of extra gaps= 2 total=48210 # 1hl9A.480.323 read from T0547.t2k.many.frag # found chain 1hl9A in template set T0547 480 :DITCDSDGE 1hl9A 324 :NVGPKGDGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=48211 # 1y08A.480.251 read from T0547.t2k.many.frag # found chain 1y08A in template set T0547 480 :DITCDSDGE 1y08A 268 :GADFDSNGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=48212 # 1j8rA.480.40 read from T0547.t2k.many.frag # found chain 1j8rA in training set T0547 480 :DITCDSDGE 1j8rA 41 :WNQCNGPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=48213 # 1rg8A.480.69 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)D480 (1rg8A)Y64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1rg8A)L72 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 1rg8A 65 :LAMDTDG Number of specific fragments extracted= 1 number of extra gaps= 2 total=48214 # 1vlyA.480.71 read from T0547.t2k.many.frag # found chain 1vlyA in training set T0547 480 :DITCDSDGE 1vlyA 60 :AAHCDAKGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=48215 # 1a12A.480.297 read from T0547.t2k.many.frag # found chain 1a12A in training set T0547 480 :DITCDSDGE 1a12A 306 :TVCMDSEGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=48216 # 1svpA.480.138 read from T0547.t2k.many.frag # found chain 1svpA in template set T0547 480 :DITCDSDGE 1svpA 244 :VVTWNSKGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=48217 # 2b4wA.480.267 read from T0547.t2k.many.frag # found chain 2b4wA in template set Warning: unaligning (T0547)D480 (2b4wA)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 481 :ITCDSDGE 2b4wA 269 :IVMRSDGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=48218 # 1c4rA.480.105 read from T0547.t2k.many.frag # found chain 1c4rA in template set T0547 480 :DITCDSDGE 1c4rA 186 :TLQVDSWPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48219 # 1ylhA.480.331 read from T0547.t2k.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)E488 (1ylhA)S320 because P (beta_P) conformation "forbidden" or filtered. T0547 480 :DITCDSDG 1ylhA 312 :NVVVRADG Number of specific fragments extracted= 1 number of extra gaps= 1 total=48220 # 1h1nA.480.197 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)C483 (1h1nA)L201 because G (3-10) conformation "forbidden" or filtered. T0547 480 :DIT 1h1nA 198 :HQY T0547 484 :DSDGE 1h1nA 202 :DSDGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=48222 # 1pguA.480.120 read from T0547.t2k.many.frag # found chain 1pguA in template set T0547 480 :DITCDSDGE 1pguA 121 :DISWDFEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=48223 # 1omhA.480.167 read from T0547.t2k.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)D480 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1omhA)T170 Warning: unaligning (T0547)T482 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1omhA)T170 T0547 483 :CDSDGE 1omhA 171 :KRSDGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=48224 # 1dmhA.480.137 read from T0547.t2k.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)D480 (1dmhA)G138 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1dmhA)K146 because E (beta_S) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 1dmhA 139 :TIFDADG Number of specific fragments extracted= 1 number of extra gaps= 2 total=48225 # 1w0pA.480.407 read from T0547.t2k.many.frag # found chain 1w0pA in training set T0547 480 :DITCDSDGE 1w0pA 408 :TLSIDESGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=48226 # 1s1dA.480.63 read from T0547.t2k.many.frag # found chain 1s1dA in training set T0547 480 :DITCDSDGE 1s1dA 64 :LTLSDSGDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=48227 # 1kt6A.480.43 read from T0547.t2k.many.frag # found chain 1kt6A in training set T0547 480 :DITCDSDGE 1kt6A 44 :EFSVDENGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=48228 # 1ntyA.480.236 read from T0547.t2k.many.frag # found chain 1ntyA in training set T0547 480 :DITCDSDGE 1ntyA 1461 :KEVKDSSGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=48229 # 1acc.480.643 read from T0547.t2k.many.frag # found chain 1acc in template set T0547 480 :DITCDSDGE 1acc 644 :VEIEDTEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48230 # 1rp0A.480.183 read from T0547.t2k.many.frag # found chain 1rp0A in training set Warning: unaligning (T0547)D484 (1rp0A)G188 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G487 (1rp0A)G191 because S (epsilon) conformation "forbidden" or filtered. T0547 480 :DITC 1rp0A 184 :VSSC T0547 485 :SD 1rp0A 189 :HD T0547 488 :E 1rp0A 192 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=48233 # 1dyoA.480.91 read from T0547.t2k.many.frag # found chain 1dyoA in template set Warning: unaligning (T0547)E488 (1dyoA)T100 because E (beta_S) conformation "forbidden" or filtered. T0547 480 :DITCDSDG 1dyoA 92 :LQYVDGSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=48234 # 2bjfA.480.279 read from T0547.t2k.many.frag # found chain 2bjfA in training set T0547 480 :DITCDSDGE 2bjfA 280 :SCMCLEKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=48235 # 1oboA.480.139 read from T0547.t2k.many.frag # found chain 1oboA in training set Warning: unaligning (T0547)D480 (1oboA)G1140 because Y (epsilon') conformation "forbidden" or filtered. T0547 481 :ITCDSDGE 1oboA 1141 :LALDEDNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=48236 # 1mfmA.480.85 read from T0547.t2k.many.frag # found chain 1mfmA in training set T0547 480 :DITCDSDGE 1mfmA 86 :NVTADKDGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48237 2axtO expands to /projects/compbio/data/pdb/2axt.pdb.gz 2axtO:# 2axtO.480.84 read from T0547.t2k.many.frag # adding 2axtO to template set # found chain 2axtO in template set T0547 480 :DITCDSDGE 2axtO 110 :ELKVNSDGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=48238 # 1jm1A.480.120 read from T0547.t2k.many.frag # found chain 1jm1A in training set Warning: unaligning (T0547)E488 (1jm1A)S175 because P (beta_P) conformation "forbidden" or filtered. T0547 480 :DITCDSDG 1jm1A 167 :DLHCPCHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=48239 # 1xe7A.480.112 read from T0547.t2k.many.frag # found chain 1xe7A in training set T0547 480 :DITCDSDGE 1xe7A 113 :YVLVYPDGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=48240 # 1fviA.480.233 read from T0547.t2k.many.frag # found chain 1fviA in template set Warning: unaligning (T0547)S485 (1fviA)Y240 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (1fviA)D241 because L (left) conformation "forbidden" or filtered. T0547 480 :DITCD 1fviA 235 :SIEVD T0547 487 :GE 1fviA 242 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=48242 # 1xksA.481.167 read from T0547.t2k.many.frag # found chain 1xksA in template set T0547 481 :ITCDSDGEI 1xksA 232 :LIPESSGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=48243 # 1a12A.481.298 read from T0547.t2k.many.frag # found chain 1a12A in training set T0547 481 :ITCDSDGEI 1a12A 307 :VCMDSEGKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48244 # 1omhA.481.168 read from T0547.t2k.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)T482 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1omhA)T170 Warning: unaligning (T0547)E488 (1omhA)Q176 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :CDSDG 1omhA 171 :KRSDG T0547 489 :I 1omhA 177 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=48246 # 1c4rA.481.106 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)D484 (1c4rA)D190 because S (epsilon) conformation "forbidden" or filtered. T0547 481 :ITC 1c4rA 187 :LQV T0547 485 :SDGEI 1c4rA 191 :SWPVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=48248 # 1vlyA.481.72 read from T0547.t2k.many.frag # found chain 1vlyA in training set T0547 481 :ITCDSDGEI 1vlyA 61 :AHCDAKGKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=48249 # 1hl9A.481.324 read from T0547.t2k.many.frag # found chain 1hl9A in template set T0547 481 :ITCDSDGEI 1hl9A 325 :VGPKGDGTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=48250 # 1y08A.481.252 read from T0547.t2k.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)E488 (1y08A)N276 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 1y08A 269 :ADFDSNG T0547 489 :I 1y08A 277 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=48252 # 1rg8A.481.70 read from T0547.t2k.many.frag # found chain 1rg8A in training set T0547 481 :ITCDSDGEI 1rg8A 65 :LAMDTDGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48253 # 1svpA.481.139 read from T0547.t2k.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)D484 (1svpA)N248 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :ITC 1svpA 245 :VTW T0547 485 :SDGEI 1svpA 249 :SKGKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=48255 # 1ylhA.481.332 read from T0547.t2k.many.frag # found chain 1ylhA in template set T0547 481 :ITCDSDGEI 1ylhA 313 :VVVRADGSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48256 # 1vkdA.481.298 read from T0547.t2k.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)C483 (1vkdA)C289 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G487 (1vkdA)T293 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1vkdA)G294 because T (delta_L) conformation "forbidden" or filtered. T0547 481 :IT 1vkdA 287 :AL T0547 484 :DSD 1vkdA 290 :DAD T0547 489 :I 1vkdA 295 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=48259 # 1j8rA.481.41 read from T0547.t2k.many.frag # found chain 1j8rA in training set T0547 481 :ITCDSDGEI 1j8rA 42 :NQCNGPEFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48260 # 1s1dA.481.64 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)D486 (1s1dA)G70 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G487 (1s1dA)D71 because G (3-10) conformation "forbidden" or filtered. T0547 481 :ITCDS 1s1dA 65 :TLSDS T0547 488 :EI 1s1dA 72 :KV Number of specific fragments extracted= 2 number of extra gaps= 1 total=48262 # 1dmhA.481.138 read from T0547.t2k.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E488 (1dmhA)K146 because E (beta_S) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 1dmhA 139 :TIFDADG T0547 489 :I 1dmhA 147 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=48264 # 1h1nA.481.198 read from T0547.t2k.many.frag # found chain 1h1nA in training set T0547 481 :ITCDSDGEI 1h1nA 199 :QYLDSDGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=48265 # 2b4wA.481.268 read from T0547.t2k.many.frag # found chain 2b4wA in template set T0547 481 :ITCDSDGEI 2b4wA 269 :IVMRSDGKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48266 # 1acc.481.644 read from T0547.t2k.many.frag # found chain 1acc in template set T0547 481 :ITCDSDGEI 1acc 645 :EIEDTEGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=48267 # 1xe7A.481.113 read from T0547.t2k.many.frag # found chain 1xe7A in training set T0547 481 :ITCDSDGEI 1xe7A 114 :VLVYPDGQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48268 # 2a8kA.481.74 read from T0547.t2k.many.frag # found chain 2a8kA in template set T0547 481 :ITCDSDGEI 2a8kA 75 :VVNDRTGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48269 # 1fviA.481.234 read from T0547.t2k.many.frag # found chain 1fviA in template set T0547 481 :ITCDSDGEI 1fviA 236 :IEVDYDGVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48270 # 1pguA.481.121 read from T0547.t2k.many.frag # found chain 1pguA in template set T0547 481 :ITCDSDGEI 1pguA 122 :ISWDFEGRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=48271 # 1mfmA.481.86 read from T0547.t2k.many.frag # found chain 1mfmA in training set T0547 481 :ITCDSDGEI 1mfmA 87 :VTADKDGVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48272 # 1w0pA.481.408 read from T0547.t2k.many.frag # found chain 1w0pA in training set T0547 481 :ITCDSDGEI 1w0pA 409 :LSIDESGGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48273 # 1kt6A.481.44 read from T0547.t2k.many.frag # found chain 1kt6A in training set T0547 481 :ITCDSDGEI 1kt6A 45 :FSVDENGHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=48274 # 2mcm.481.53 read from T0547.t2k.many.frag # found chain 2mcm in training set T0547 481 :ITCDSDGEI 2mcm 54 :VTADAAGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=48275 # 1xzwA.481.359 read from T0547.t2k.many.frag # found chain 1xzwA in template set T0547 481 :ITCDSDGEI 1xzwA 360 :DGGNSEGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48276 # 1mswD.481.417 read from T0547.t2k.many.frag # found chain 1mswD in template set T0547 481 :ITCDSDGEI 1mswD 418 :YNMDWRGRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48277 # 1oboA.481.140 read from T0547.t2k.many.frag # found chain 1oboA in training set Warning: unaligning (T0547)D484 (1oboA)D1144 because D (zeta) conformation "forbidden" or filtered. T0547 481 :ITC 1oboA 1141 :LAL T0547 485 :SDGEI 1oboA 1145 :EDNQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=48279 # 1rp0A.481.184 read from T0547.t2k.many.frag # found chain 1rp0A in training set Warning: unaligning (T0547)D484 (1rp0A)G188 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G487 (1rp0A)G191 because S (epsilon) conformation "forbidden" or filtered. T0547 481 :ITC 1rp0A 185 :SSC T0547 485 :SD 1rp0A 189 :HD T0547 488 :EI 1rp0A 192 :PF Number of specific fragments extracted= 3 number of extra gaps= 2 total=48282 # 1t61A.481.173 read from T0547.t2k.many.frag # found chain 1t61A in training set Warning: unaligning (T0547)C483 (1t61A)C176 because E (beta_S) conformation "forbidden" or filtered. T0547 481 :IT 1t61A 174 :IE T0547 484 :DSDGEI 1t61A 177 :HGRGTC Number of specific fragments extracted= 2 number of extra gaps= 1 total=48284 # 1xksA.482.168 read from T0547.t2k.many.frag # found chain 1xksA in template set T0547 482 :TCDSDGEIS 1xksA 233 :IPESSGKIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=48285 # 1a12A.482.299 read from T0547.t2k.many.frag # found chain 1a12A in training set T0547 482 :TCDSDGEIS 1a12A 308 :CMDSEGKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=48286 # 1omhA.482.169 read from T0547.t2k.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)T482 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1omhA)T170 Warning: unaligning (T0547)E488 (1omhA)Q176 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1omhA)R178 because Y (epsilon') conformation "forbidden" or filtered. T0547 483 :CDSDG 1omhA 171 :KRSDG T0547 489 :I 1omhA 177 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=48288 # 1c4rA.482.107 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)E488 (1c4rA)V194 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TCDSDG 1c4rA 188 :QVDSWP T0547 489 :IS 1c4rA 195 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=48290 # 1rg8A.482.71 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)Y74 because Y (epsilon') conformation "forbidden" or filtered. T0547 482 :TCDSDGEI 1rg8A 66 :AMDTDGLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=48291 # 1hl9A.482.325 read from T0547.t2k.many.frag # found chain 1hl9A in template set T0547 482 :TCDSDGEIS 1hl9A 326 :GPKGDGTIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=48292 # 1ylhA.482.333 read from T0547.t2k.many.frag # found chain 1ylhA in template set T0547 482 :TCDSDGEIS 1ylhA 314 :VVRADGSVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48293 # 1s1dA.482.65 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)D486 (1s1dA)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 482 :TCDS 1s1dA 66 :LSDS T0547 487 :GEIS 1s1dA 71 :DKVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=48295 # 1y08A.482.253 read from T0547.t2k.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)E488 (1y08A)N276 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TCDSDG 1y08A 270 :DFDSNG T0547 489 :IS 1y08A 277 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=48297 # 1acc.482.645 read from T0547.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0547)E488 (1acc)L652 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1acc)E654 because D (zeta) conformation "forbidden" or filtered. T0547 482 :TCDSDG 1acc 646 :IEDTEG T0547 489 :I 1acc 653 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=48299 # 1vlyA.482.73 read from T0547.t2k.many.frag # found chain 1vlyA in training set T0547 482 :TCDSDGEIS 1vlyA 62 :HCDAKGKMW Number of specific fragments extracted= 1 number of extra gaps= 0 total=48300 # 1svpA.482.140 read from T0547.t2k.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)D484 (1svpA)N248 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TC 1svpA 246 :TW T0547 485 :SDGEIS 1svpA 249 :SKGKTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=48302 # 2b4wA.482.269 read from T0547.t2k.many.frag # found chain 2b4wA in template set T0547 482 :TCDSDGEIS 2b4wA 270 :VMRSDGKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48303 # 1dmhA.482.139 read from T0547.t2k.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E488 (1dmhA)K146 because E (beta_S) conformation "forbidden" or filtered. T0547 482 :TCDSDG 1dmhA 140 :IFDADG T0547 489 :IS 1dmhA 147 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=48305 # 2a8kA.482.75 read from T0547.t2k.many.frag # found chain 2a8kA in template set T0547 482 :TCDSDGEIS 2a8kA 76 :VNDRTGEVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=48306 # 1h1nA.482.199 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)C483 (1h1nA)L201 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I489 (1h1nA)G207 because L (left) conformation "forbidden" or filtered. T0547 482 :T 1h1nA 200 :Y T0547 484 :DSDGE 1h1nA 202 :DSDGS T0547 490 :S 1h1nA 208 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=48309 # 1xe7A.482.114 read from T0547.t2k.many.frag # found chain 1xe7A in training set T0547 482 :TCDSDGEIS 1xe7A 115 :LVYPDGQVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=48310 # 1mfmA.482.87 read from T0547.t2k.many.frag # found chain 1mfmA in training set T0547 482 :TCDSDGEIS 1mfmA 88 :TADKDGVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48311 # 1mswD.482.418 read from T0547.t2k.many.frag # found chain 1mswD in template set T0547 482 :TCDSDGEIS 1mswD 419 :NMDWRGRVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=48312 # 1fviA.482.235 read from T0547.t2k.many.frag # found chain 1fviA in template set Warning: unaligning (T0547)S490 (1fviA)F245 because Y (epsilon') conformation "forbidden" or filtered. T0547 482 :TCDSDGEI 1fviA 237 :EVDYDGVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=48313 # 1xzwA.482.360 read from T0547.t2k.many.frag # found chain 1xzwA in template set T0547 482 :TCDSDGEIS 1xzwA 361 :GGNSEGLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=48314 # 1qxmA.482.213 read from T0547.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)C483 (1qxmA)C201 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :T 1qxmA 200 :K T0547 484 :DSDGEIS 1qxmA 202 :QENNRYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=48316 # 2mcm.482.54 read from T0547.t2k.many.frag # found chain 2mcm in training set T0547 482 :TCDSDGEIS 2mcm 55 :TADAAGKIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=48317 # 1j8rA.482.42 read from T0547.t2k.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)S490 (1j8rA)D51 because G (3-10) conformation "forbidden" or filtered. T0547 482 :TCDSDGEI 1j8rA 43 :QCNGPEFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=48318 # 1t61A.482.174 read from T0547.t2k.many.frag # found chain 1t61A in training set Warning: unaligning (T0547)E488 (1t61A)T181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1t61A)N183 because Y (epsilon') conformation "forbidden" or filtered. T0547 482 :TCDSDG 1t61A 175 :ECHGRG T0547 489 :I 1t61A 182 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=48320 # 1kt6A.482.45 read from T0547.t2k.many.frag # found chain 1kt6A in training set Warning: unaligning (T0547)S490 (1kt6A)S54 because Y (epsilon') conformation "forbidden" or filtered. T0547 482 :TCDSDGEI 1kt6A 46 :SVDENGHM Number of specific fragments extracted= 1 number of extra gaps= 1 total=48321 # 1zkdA.482.179 read from T0547.t2k.many.frag # found chain 1zkdA in template set T0547 482 :TCDSDGEIS 1zkdA 180 :EIGASGELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48322 # 1uv4A.482.106 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)T482 (1uv4A)T107 because G (3-10) conformation "forbidden" or filtered. T0547 483 :CDSDGEIS 1uv4A 108 :SISSGGWK Number of specific fragments extracted= 1 number of extra gaps= 1 total=48323 # 2bduA.482.192 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 482 :TCDSDGEIS 2bduA 193 :DFDENGVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=48324 # 1kv7A.482.160 read from T0547.t2k.many.frag # found chain 1kv7A in training set T0547 482 :TCDSDGEIS 1kv7A 189 :KFSADGQID Number of specific fragments extracted= 1 number of extra gaps= 0 total=48325 # 1xksA.483.169 read from T0547.t2k.many.frag # found chain 1xksA in template set T0547 483 :CDSDGEISY 1xksA 234 :PESSGKIHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=48326 # 1a12A.483.300 read from T0547.t2k.many.frag # found chain 1a12A in training set T0547 483 :CDSDGEISY 1a12A 309 :MDSEGKAYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=48327 # 1rg8A.483.72 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)Y74 because Y (epsilon') conformation "forbidden" or filtered. T0547 483 :CDSDGEI 1rg8A 67 :MDTDGLL T0547 491 :Y 1rg8A 75 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=48329 # 1omhA.483.170 read from T0547.t2k.many.frag # found chain 1omhA in template set T0547 483 :CDSDGEISY 1omhA 171 :KRSDGQWRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48330 # 1c4rA.483.108 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)E488 (1c4rA)V194 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :CDSDG 1c4rA 189 :VDSWP T0547 489 :ISY 1c4rA 195 :IER Number of specific fragments extracted= 2 number of extra gaps= 1 total=48332 # 1s1dA.483.66 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)D486 (1s1dA)G70 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1s1dA)K72 because E (beta_S) conformation "forbidden" or filtered. T0547 483 :CDS 1s1dA 67 :SDS T0547 487 :G 1s1dA 71 :D T0547 489 :ISY 1s1dA 73 :VAV Number of specific fragments extracted= 3 number of extra gaps= 2 total=48335 # 1y08A.483.254 read from T0547.t2k.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)E488 (1y08A)N276 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y491 (1y08A)A279 because Y (epsilon') conformation "forbidden" or filtered. T0547 483 :CDSDG 1y08A 271 :FDSNG T0547 489 :IS 1y08A 277 :LK Number of specific fragments extracted= 2 number of extra gaps= 2 total=48337 # 1acc.483.646 read from T0547.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0547)S490 (1acc)E654 because D (zeta) conformation "forbidden" or filtered. T0547 483 :CDSDGEI 1acc 647 :EDTEGLK T0547 491 :Y 1acc 655 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=48339 # 1ylhA.483.334 read from T0547.t2k.many.frag # found chain 1ylhA in template set T0547 483 :CDSDGEISY 1ylhA 315 :VRADGSVDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=48340 # 2b4wA.483.270 read from T0547.t2k.many.frag # found chain 2b4wA in template set Warning: unaligning (T0547)S490 (2b4wA)D278 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :CDSDGEI 2b4wA 271 :MRSDGKV T0547 491 :Y 2b4wA 279 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=48342 # 1hl9A.483.326 read from T0547.t2k.many.frag # found chain 1hl9A in template set T0547 483 :CDSDGEISY 1hl9A 327 :PKGDGTIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48343 # 1vlyA.483.74 read from T0547.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)E488 (1vlyA)K68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y491 because of BadResidue code BAD_PEPTIDE in next template residue (1vlyA)N72 T0547 483 :CDSDG 1vlyA 63 :CDAKG T0547 489 :IS 1vlyA 69 :MW Number of specific fragments extracted= 2 number of extra gaps= 2 total=48345 # 1xe7A.483.115 read from T0547.t2k.many.frag # found chain 1xe7A in training set T0547 483 :CDSDGEISY 1xe7A 116 :VYPDGQVKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=48346 # 2a8kA.483.76 read from T0547.t2k.many.frag # found chain 2a8kA in template set T0547 483 :CDSDGEISY 2a8kA 77 :NDRTGEVTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=48347 # 1svpA.483.141 read from T0547.t2k.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)E488 (1svpA)K252 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :CDSDG 1svpA 247 :WNSKG T0547 489 :ISY 1svpA 253 :TIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=48349 # 1mfmA.483.88 read from T0547.t2k.many.frag # found chain 1mfmA in training set T0547 483 :CDSDGEISY 1mfmA 89 :ADKDGVADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48350 # 1mswD.483.419 read from T0547.t2k.many.frag # found chain 1mswD in template set T0547 483 :CDSDGEISY 1mswD 420 :MDWRGRVYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48351 # 1zkdA.483.180 read from T0547.t2k.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)E488 (1zkdA)E186 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :CDSDG 1zkdA 181 :IGASG T0547 489 :ISY 1zkdA 187 :LVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=48353 # 1fviA.483.236 read from T0547.t2k.many.frag # found chain 1fviA in template set Warning: unaligning (T0547)S485 (1fviA)Y240 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (1fviA)D241 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1fviA)F245 because Y (epsilon') conformation "forbidden" or filtered. T0547 483 :CD 1fviA 238 :VD T0547 487 :GEI 1fviA 242 :GVV T0547 491 :Y 1fviA 246 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=48356 # 1qxmA.483.214 read from T0547.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)C483 (1qxmA)C201 because P (beta_P) conformation "forbidden" or filtered. T0547 484 :DSDGEISY 1qxmA 202 :QENNRYLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=48357 # 1xzwA.483.361 read from T0547.t2k.many.frag # found chain 1xzwA in template set Warning: unaligning (T0547)C483 (1xzwA)G362 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1xzwA)L367 because P (beta_P) conformation "forbidden" or filtered. T0547 484 :DSDG 1xzwA 363 :NSEG T0547 489 :ISY 1xzwA 368 :ASE Number of specific fragments extracted= 2 number of extra gaps= 2 total=48359 # 1lm8V.483.35 read from T0547.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)E488 (1lm8V)E94 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :CDSDG 1lm8V 89 :LNFDG T0547 489 :ISY 1lm8V 95 :PQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=48361 # 1h7sA.483.136 read from T0547.t2k.many.frag # found chain 1h7sA in template set T0547 483 :CDSDGEISY 1h7sA 137 :FDHNGKIIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=48362 # 1t61A.483.175 read from T0547.t2k.many.frag # found chain 1t61A in training set Warning: unaligning (T0547)D484 (1t61A)H177 because E (beta_S) conformation "forbidden" or filtered. T0547 483 :C 1t61A 176 :C T0547 485 :SDGEISY 1t61A 178 :GRGTCNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=48364 # 2mcm.483.55 read from T0547.t2k.many.frag # found chain 2mcm in training set T0547 483 :CDSDGEISY 2mcm 56 :ADAAGKITA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48365 1fjrA expands to /projects/compbio/data/pdb/1fjr.pdb.gz 1fjrA:# 1fjrA.483.100 read from T0547.t2k.many.frag # adding 1fjrA to template set # found chain 1fjrA in template set T0547 483 :CDSDGEISY 1fjrA 101 :TLDDGSVSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=48366 # 2axtO.483.87 read from T0547.t2k.many.frag # found chain 2axtO in template set Warning: unaligning (T0547)D484 (2axtO)N114 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (2axtO)D116 because L (left) conformation "forbidden" or filtered. T0547 483 :C 2axtO 113 :V T0547 485 :S 2axtO 115 :S T0547 487 :GEISY 2axtO 117 :GSLTF Number of specific fragments extracted= 3 number of extra gaps= 2 total=48369 1adt expands to /projects/compbio/data/pdb/1adt.pdb.gz 1adt:Warning: there is no chain 1adt will retry with 1adtA # 1adt.483.110 read from T0547.t2k.many.frag # adding 1adt to template set # found chain 1adt in template set Warning: unaligning (T0547)S490 (1adt)I291 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :CDSDGEI 1adt 284 :CLHGSIM T0547 491 :Y 1adt 292 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=48371 # 1dmhA.483.140 read from T0547.t2k.many.frag # found chain 1dmhA in training set T0547 483 :CDSDGEISY 1dmhA 141 :FDADGKPLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=48372 # 2bduA.483.193 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)Y491 (2bduA)G202 because Y (epsilon') conformation "forbidden" or filtered. T0547 483 :CDSDGEIS 2bduA 194 :FDENGVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=48373 # 1xksA.484.170 read from T0547.t2k.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)S492 (1xksA)H243 because Y (epsilon') conformation "forbidden" or filtered. T0547 484 :DSDGEISY 1xksA 235 :ESSGKIHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=48374 # 1a12A.484.301 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)E488 (1a12A)K314 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S492 (1a12A)L318 because Y (epsilon') conformation "forbidden" or filtered. T0547 484 :DSDG 1a12A 310 :DSEG T0547 489 :ISY 1a12A 315 :AYS Number of specific fragments extracted= 2 number of extra gaps= 2 total=48376 # 1s1dA.484.67 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)D486 (1s1dA)G70 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G487 (1s1dA)D71 because G (3-10) conformation "forbidden" or filtered. T0547 484 :DS 1s1dA 68 :DS T0547 488 :EISYS 1s1dA 72 :KVAVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=48378 # 1rg8A.484.73 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)E488 (1rg8A)L72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1rg8A)Y74 because Y (epsilon') conformation "forbidden" or filtered. T0547 484 :DSDG 1rg8A 68 :DTDG T0547 489 :I 1rg8A 73 :L T0547 491 :YS 1rg8A 75 :GS Number of specific fragments extracted= 3 number of extra gaps= 2 total=48381 # 1c4rA.484.109 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)D484 (1c4rA)D190 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G487 (1c4rA)P193 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SD 1c4rA 191 :SW T0547 488 :EISYS 1c4rA 194 :VIERY Number of specific fragments extracted= 2 number of extra gaps= 2 total=48383 # 1omhA.484.171 read from T0547.t2k.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)S490 (1omhA)R178 because Y (epsilon') conformation "forbidden" or filtered. T0547 484 :DSDGEI 1omhA 172 :RSDGQW T0547 491 :YS 1omhA 179 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=48385 # 1acc.484.647 read from T0547.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0547)E488 (1acc)L652 because P (beta_P) conformation "forbidden" or filtered. T0547 484 :DSDG 1acc 648 :DTEG T0547 489 :ISYS 1acc 653 :KEVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=48387 # 1y08A.484.255 read from T0547.t2k.many.frag # found chain 1y08A in template set T0547 484 :DSDGEISYS 1y08A 272 :DSNGNLKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=48388 # 2b4wA.484.271 read from T0547.t2k.many.frag # found chain 2b4wA in template set T0547 484 :DSDGEISYS 2b4wA 272 :RSDGKVDLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=48389 # 1ylhA.484.335 read from T0547.t2k.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)S492 (1ylhA)D324 because G (3-10) conformation "forbidden" or filtered. T0547 484 :DSDGEISY 1ylhA 316 :RADGSVDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=48390 # 1hl9A.484.327 read from T0547.t2k.many.frag # found chain 1hl9A in template set T0547 484 :DSDGEISYS 1hl9A 328 :KGDGTIPDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48391 # 2a8kA.484.77 read from T0547.t2k.many.frag # found chain 2a8kA in template set T0547 484 :DSDGEISYS 2a8kA 78 :DRTGEVTQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=48392 # 1vlyA.484.75 read from T0547.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)Y491 because of BadResidue code BAD_PEPTIDE in next template residue (1vlyA)N72 Warning: unaligning (T0547)S492 because of BadResidue code BAD_PEPTIDE at template residue (1vlyA)N72 T0547 484 :DSDGEIS 1vlyA 64 :DAKGKMW Number of specific fragments extracted= 1 number of extra gaps= 1 total=48393 # 1xe7A.484.116 read from T0547.t2k.many.frag # found chain 1xe7A in training set Warning: unaligning (T0547)E488 (1xe7A)Q121 because P (beta_P) conformation "forbidden" or filtered. T0547 484 :DSDG 1xe7A 117 :YPDG T0547 489 :ISYS 1xe7A 122 :VKSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=48395 # 1mfmA.484.89 read from T0547.t2k.many.frag # found chain 1mfmA in training set T0547 484 :DSDGEISYS 1mfmA 90 :DKDGVADVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=48396 # 1zkdA.484.181 read from T0547.t2k.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)E488 (1zkdA)E186 because P (beta_P) conformation "forbidden" or filtered. T0547 484 :DSDG 1zkdA 182 :GASG T0547 489 :ISYS 1zkdA 187 :LVFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48398 # 1mswD.484.420 read from T0547.t2k.many.frag # found chain 1mswD in template set Warning: unaligning (T0547)E488 (1mswD)R425 because P (beta_P) conformation "forbidden" or filtered. T0547 484 :DSDG 1mswD 421 :DWRG T0547 489 :ISYS 1mswD 426 :VYAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=48400 # 1qxmA.484.215 read from T0547.t2k.many.frag # found chain 1qxmA in training set T0547 484 :DSDGEISYS 1qxmA 202 :QENNRYLTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=48401 # 1fviA.484.237 read from T0547.t2k.many.frag # found chain 1fviA in template set Warning: unaligning (T0547)E488 (1fviA)V243 because P (beta_P) conformation "forbidden" or filtered. T0547 484 :DSDG 1fviA 239 :DYDG T0547 489 :ISYS 1fviA 244 :VFSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=48403 # 1fjrA.484.101 read from T0547.t2k.many.frag # found chain 1fjrA in template set T0547 484 :DSDGEISYS 1fjrA 102 :LDDGSVSRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=48404 # 1xzwA.484.362 read from T0547.t2k.many.frag # found chain 1xzwA in template set T0547 484 :DSDGEISYS 1xzwA 363 :NSEGLASEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=48405 # 1o75A.484.114 read from T0547.t2k.many.frag # found chain 1o75A in template set T0547 484 :DSDGEISYS 1o75A 115 :GEDGEIKFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=48406 # 2bduA.484.194 read from T0547.t2k.many.frag # found chain 2bduA in template set T0547 484 :DSDGEISYS 2bduA 195 :DENGVLKGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=48407 # 1svpA.484.142 read from T0547.t2k.many.frag # found chain 1svpA in template set T0547 484 :DSDGEISYS 1svpA 248 :NSKGKTIKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=48408 # 1lm8V.484.36 read from T0547.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)D484 (1lm8V)N90 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDGEISYS 1lm8V 91 :FDGEPQPY Number of specific fragments extracted= 1 number of extra gaps= 1 total=48409 # 1br9.484.169 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)S485 because of BadResidue code BAD_PEPTIDE in next template residue (1br9)D172 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE at template residue (1br9)D172 Warning: unaligning (T0547)E488 (1br9)S174 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1br9)A176 because Y (epsilon') conformation "forbidden" or filtered. T0547 484 :D 1br9 170 :R T0547 487 :G 1br9 173 :G T0547 489 :I 1br9 175 :C T0547 491 :YS 1br9 177 :WY Number of specific fragments extracted= 4 number of extra gaps= 3 total=48413 # 1zupA.484.90 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)T84 Warning: unaligning (T0547)I489 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)T84 T0547 484 :DSDG 1zupA 79 :DREG T0547 490 :SYS 1zupA 85 :KTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=48415 # 1f00I.484.130 read from T0547.t2k.many.frag # found chain 1f00I in template set Warning: unaligning (T0547)D484 (1f00I)G788 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S485 (1f00I)G789 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S492 (1f00I)R796 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :DGEISY 1f00I 790 :NGKYTW Number of specific fragments extracted= 1 number of extra gaps= 2 total=48416 # 1t61A.484.176 read from T0547.t2k.many.frag # found chain 1t61A in training set Warning: unaligning (T0547)E488 (1t61A)T181 because P (beta_P) conformation "forbidden" or filtered. T0547 484 :DSDG 1t61A 177 :HGRG T0547 489 :ISYS 1t61A 182 :CNYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=48418 # 1crzA.484.247 read from T0547.t2k.many.frag # found chain 1crzA in template set T0547 484 :DSDGEISYS 1crzA 254 :LASGQIRQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48419 # 1xksA.485.171 read from T0547.t2k.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)E488 (1xksA)K239 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDG 1xksA 236 :SSG T0547 489 :ISYSK 1xksA 240 :IHQHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=48421 # 1a12A.485.302 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)S492 (1a12A)L318 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1a12A)G319 because S (epsilon) conformation "forbidden" or filtered. T0547 485 :SDGEISY 1a12A 311 :SEGKAYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=48422 # 1s1dA.485.68 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)G487 (1s1dA)D71 because G (3-10) conformation "forbidden" or filtered. T0547 485 :SD 1s1dA 69 :SG T0547 488 :EISYSK 1s1dA 72 :KVAVEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=48424 # 1c4rA.485.110 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)K493 (1c4rA)P199 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDGEISYS 1c4rA 191 :SWPVIERY Number of specific fragments extracted= 1 number of extra gaps= 1 total=48425 # 1rg8A.485.74 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)E488 (1rg8A)L72 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDG 1rg8A 69 :TDG T0547 489 :ISYSK 1rg8A 73 :LYGSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=48427 # 1acc.485.648 read from T0547.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0547)E488 (1acc)L652 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDG 1acc 649 :TEG T0547 489 :ISYSK 1acc 653 :KEVIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=48429 # 2a8kA.485.78 read from T0547.t2k.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)E488 (2a8kA)E82 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDG 2a8kA 79 :RTG T0547 489 :ISYSK 2a8kA 83 :VTQIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=48431 # 1y08A.485.256 read from T0547.t2k.many.frag # found chain 1y08A in template set T0547 485 :SDGEISYSK 1y08A 273 :SNGNLKAIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=48432 # 1omhA.485.172 read from T0547.t2k.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)E488 (1omhA)Q176 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1omhA)R178 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDG 1omhA 173 :SDG T0547 489 :I 1omhA 177 :W T0547 491 :YSK 1omhA 179 :ALK Number of specific fragments extracted= 3 number of extra gaps= 2 total=48435 # 1ylhA.485.336 read from T0547.t2k.many.frag # found chain 1ylhA in template set T0547 485 :SDGEISYSK 1ylhA 317 :ADGSVDFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48436 # 2bduA.485.195 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)Y491 (2bduA)G202 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEIS 2bduA 196 :ENGVLK T0547 492 :SK 2bduA 203 :FK Number of specific fragments extracted= 2 number of extra gaps= 1 total=48438 # 1zkdA.485.182 read from T0547.t2k.many.frag # found chain 1zkdA in template set T0547 485 :SDGEISYSK 1zkdA 183 :ASGELVFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48439 # 1o75A.485.115 read from T0547.t2k.many.frag # found chain 1o75A in template set T0547 485 :SDGEISYSK 1o75A 116 :EDGEIKFEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48440 # 1xe7A.485.117 read from T0547.t2k.many.frag # found chain 1xe7A in training set T0547 485 :SDGEISYSK 1xe7A 118 :PDGQVKSFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=48441 # 1fjrA.485.102 read from T0547.t2k.many.frag # found chain 1fjrA in template set T0547 485 :SDGEISYSK 1fjrA 103 :DDGSVSRRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=48442 # 1lm8V.485.37 read from T0547.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)K493 (1lm8V)P99 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDGEISYS 1lm8V 91 :FDGEPQPY Number of specific fragments extracted= 1 number of extra gaps= 1 total=48443 # 1vlyA.485.76 read from T0547.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)Y491 because of BadResidue code BAD_PEPTIDE in next template residue (1vlyA)N72 Warning: unaligning (T0547)S492 because of BadResidue code BAD_PEPTIDE at template residue (1vlyA)N72 T0547 485 :SDGEIS 1vlyA 65 :AKGKMW T0547 493 :K 1vlyA 73 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=48445 # 1mfmA.485.90 read from T0547.t2k.many.frag # found chain 1mfmA in training set Warning: unaligning (T0547)S490 (1mfmA)D96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1mfmA)I99 because E (beta_S) conformation "forbidden" or filtered. T0547 485 :SDGEI 1mfmA 91 :KDGVA T0547 491 :YS 1mfmA 97 :VS Number of specific fragments extracted= 2 number of extra gaps= 2 total=48447 # 1mswD.485.421 read from T0547.t2k.many.frag # found chain 1mswD in template set Warning: unaligning (T0547)K493 (1mswD)S430 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDGEISYS 1mswD 422 :WRGRVYAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=48448 # 1qxmA.485.216 read from T0547.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)S492 (1qxmA)W210 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDGEISY 1qxmA 203 :ENNRYLT T0547 493 :K 1qxmA 211 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=48450 # 1xzwA.485.363 read from T0547.t2k.many.frag # found chain 1xzwA in template set T0547 485 :SDGEISYSK 1xzwA 364 :SEGLASEMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=48451 1ka8A expands to /projects/compbio/data/pdb/1ka8.pdb.gz 1ka8A:# 1ka8A.485.7 read from T0547.t2k.many.frag # adding 1ka8A to template set # found chain 1ka8A in template set T0547 485 :SDGEISYSK 1ka8A 8 :FIGYLETLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=48452 # 2b4wA.485.272 read from T0547.t2k.many.frag # found chain 2b4wA in template set T0547 485 :SDGEISYSK 2b4wA 273 :SDGKVDLYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=48453 # 2bh1A.485.59 read from T0547.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)S490 (2bh1A)T65 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEI 2bh1A 60 :SDLIL T0547 491 :YSK 2bh1A 66 :SVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=48455 # 1crzA.485.248 read from T0547.t2k.many.frag # found chain 1crzA in template set T0547 485 :SDGEISYSK 1crzA 255 :ASGQIRQVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=48456 # 1zupA.485.91 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)D486 (1zupA)E81 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)T84 Warning: unaligning (T0547)I489 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)T84 Warning: unaligning (T0547)K493 (1zupA)F88 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :S 1zupA 80 :R T0547 487 :G 1zupA 82 :G T0547 490 :SYS 1zupA 85 :KTL Number of specific fragments extracted= 3 number of extra gaps= 3 total=48459 # 1suuA.485.121 read from T0547.t2k.many.frag # found chain 1suuA in training set T0547 485 :SDGEISYSK 1suuA 620 :ASGKIARFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=48460 # 1br9.485.170 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)S485 because of BadResidue code BAD_PEPTIDE in next template residue (1br9)D172 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE at template residue (1br9)D172 Warning: unaligning (T0547)S490 (1br9)A176 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :GEI 1br9 173 :GSC T0547 491 :YSK 1br9 177 :WYR Number of specific fragments extracted= 2 number of extra gaps= 2 total=48462 # 1hl9A.485.328 read from T0547.t2k.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)K493 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hl9A)E339 T0547 485 :SDGEISYS 1hl9A 329 :GDGTIPDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48463 # 1gpc.485.108 read from T0547.t2k.many.frag # found chain 1gpc in template set Warning: unaligning (T0547)S490 (1gpc)F135 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEI 1gpc 130 :NEGKV T0547 491 :YSK 1gpc 136 :KYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=48465 # 1xksA.486.172 read from T0547.t2k.many.frag # found chain 1xksA in template set T0547 486 :DGEISYSKD 1xksA 237 :SGKIHQHIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48466 # 1s1dA.486.69 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)D486 (1s1dA)G70 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G487 (1s1dA)D71 because G (3-10) conformation "forbidden" or filtered. T0547 488 :EISYSKD 1s1dA 72 :KVAVEWD Number of specific fragments extracted= 1 number of extra gaps= 1 total=48467 # 1c4rA.486.111 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)E488 (1c4rA)V194 because P (beta_P) conformation "forbidden" or filtered. T0547 486 :DG 1c4rA 192 :WP T0547 489 :ISYSKD 1c4rA 195 :IERYPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=48469 # 1rg8A.486.75 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)Y74 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :DGEI 1rg8A 70 :DGLL T0547 491 :YSKD 1rg8A 75 :GSQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=48471 # 1a12A.486.303 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)E488 (1a12A)K314 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S492 (1a12A)L318 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1a12A)G319 because S (epsilon) conformation "forbidden" or filtered. T0547 486 :DG 1a12A 312 :EG T0547 489 :ISY 1a12A 315 :AYS T0547 494 :D 1a12A 320 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=48474 # 2bduA.486.196 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)S490 (2bduA)K201 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y491 (2bduA)G202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (2bduA)G205 because S (epsilon) conformation "forbidden" or filtered. T0547 486 :DGEI 2bduA 197 :NGVL T0547 492 :SK 2bduA 203 :FK Number of specific fragments extracted= 2 number of extra gaps= 2 total=48476 # 2a8kA.486.79 read from T0547.t2k.many.frag # found chain 2a8kA in template set T0547 486 :DGEISYSKD 2a8kA 80 :TGEVTQISD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48477 # 1o75A.486.116 read from T0547.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)Y491 (1o75A)F122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1o75A)A124 because P (beta_P) conformation "forbidden" or filtered. T0547 486 :DGEIS 1o75A 117 :DGEIK T0547 492 :S 1o75A 123 :E T0547 494 :D 1o75A 125 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=48480 # 1acc.486.649 read from T0547.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0547)S490 (1acc)E654 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1acc)N657 because N (gamma') conformation "forbidden" or filtered. T0547 486 :DGEI 1acc 650 :EGLK T0547 491 :YS 1acc 655 :VI T0547 494 :D 1acc 658 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=48483 # 1ylhA.486.337 read from T0547.t2k.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)E488 (1ylhA)S320 because P (beta_P) conformation "forbidden" or filtered. T0547 486 :DG 1ylhA 318 :DG T0547 489 :ISYSKD 1ylhA 321 :VDFDDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48485 # 2bh1A.486.60 read from T0547.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)G487 (2bh1A)L62 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (2bh1A)T65 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :D 2bh1A 61 :D T0547 488 :EI 2bh1A 63 :IL T0547 491 :YSKD 2bh1A 66 :SVEI Number of specific fragments extracted= 3 number of extra gaps= 2 total=48488 # 1zkdA.486.183 read from T0547.t2k.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)S492 (1zkdA)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :DGEISY 1zkdA 184 :SGELVF T0547 493 :KD 1zkdA 191 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=48490 # 1lm8V.486.38 read from T0547.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)E488 (1lm8V)E94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1lm8V)T100 because P (beta_P) conformation "forbidden" or filtered. T0547 486 :DG 1lm8V 92 :DG T0547 489 :ISYSK 1lm8V 95 :PQPYP Number of specific fragments extracted= 2 number of extra gaps= 2 total=48492 # 1ka8A.486.8 read from T0547.t2k.many.frag # found chain 1ka8A in template set T0547 486 :DGEISYSKD 1ka8A 9 :IGYLETLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=48493 # 1crzA.486.249 read from T0547.t2k.many.frag # found chain 1crzA in template set T0547 486 :DGEISYSKD 1crzA 256 :SGQIRQVTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48494 # 1iow.486.150 read from T0547.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0547)D486 (1iow)S151 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1iow)G153 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1iow)A159 because S (epsilon) conformation "forbidden" or filtered. T0547 487 :G 1iow 152 :V T0547 489 :ISYSK 1iow 154 :MSKVV Number of specific fragments extracted= 2 number of extra gaps= 3 total=48496 # 1qxmA.486.217 read from T0547.t2k.many.frag # found chain 1qxmA in training set T0547 486 :DGEISYSKD 1qxmA 204 :NNRYLTWIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=48497 # 1o7jA.486.280 read from T0547.t2k.many.frag # found chain 1o7jA in training set T0547 486 :DGEISYSKD 1o7jA 281 :NGIVPPDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=48498 # 1omhA.486.173 read from T0547.t2k.many.frag # found chain 1omhA in template set T0547 486 :DGEISYSKD 1omhA 174 :DGQWRALKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=48499 # 1zupA.486.92 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)T84 Warning: unaligning (T0547)I489 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)T84 Warning: unaligning (T0547)D494 (1zupA)S89 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :DG 1zupA 81 :EG T0547 490 :SYSK 1zupA 85 :KTLF Number of specific fragments extracted= 2 number of extra gaps= 2 total=48501 # 1fjrA.486.103 read from T0547.t2k.many.frag # found chain 1fjrA in template set T0547 486 :DGEISYSKD 1fjrA 104 :DGSVSRRHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=48502 # 1xzwA.486.364 read from T0547.t2k.many.frag # found chain 1xzwA in template set T0547 486 :DGEISYSKD 1xzwA 365 :EGLASEMTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=48503 # 1suuA.486.122 read from T0547.t2k.many.frag # found chain 1suuA in training set T0547 486 :DGEISYSKD 1suuA 621 :SGKIARFES Number of specific fragments extracted= 1 number of extra gaps= 0 total=48504 # 1y08A.486.257 read from T0547.t2k.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)S490 (1y08A)K278 because G (3-10) conformation "forbidden" or filtered. T0547 486 :DGEI 1y08A 274 :NGNL T0547 491 :YSKD 1y08A 279 :AIYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=48506 # 1br9.486.171 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE at template residue (1br9)D172 T0547 487 :GEISYSKD 1br9 173 :GSCAWYRG Number of specific fragments extracted= 1 number of extra gaps= 1 total=48507 # 1gpc.486.109 read from T0547.t2k.many.frag # found chain 1gpc in template set Warning: unaligning (T0547)S490 (1gpc)F135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1gpc)F139 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :DGEI 1gpc 131 :EGKV T0547 491 :YSK 1gpc 136 :KYR Number of specific fragments extracted= 2 number of extra gaps= 2 total=48509 1cqyA expands to /projects/compbio/data/pdb/1cqy.pdb.gz 1cqyA:# 1cqyA.486.71 read from T0547.t2k.many.frag # adding 1cqyA to template set # found chain 1cqyA in template set Warning: unaligning (T0547)K493 (1cqyA)Q496 because P (beta_P) conformation "forbidden" or filtered. T0547 486 :DGEISYS 1cqyA 489 :DGTVKSW T0547 494 :D 1cqyA 497 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=48511 # 1v3eA.486.154 read from T0547.t2k.many.frag # found chain 1v3eA in template set T0547 486 :DGEISYSKD 1v3eA 296 :DGSISTTRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=48512 # 1f60A.486.347 read from T0547.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)S492 (1f60A)G354 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1f60A)S356 because D (zeta) conformation "forbidden" or filtered. T0547 486 :DGEISY 1f60A 348 :PGQISA T0547 493 :K 1f60A 355 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=48514 # 1xe7A.486.118 read from T0547.t2k.many.frag # found chain 1xe7A in training set T0547 486 :DGEISYSKD 1xe7A 119 :DGQVKSFKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48515 # 1xksA.487.173 read from T0547.t2k.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)S492 (1xksA)H243 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1xksA)I244 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1xksA)P246 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :GEISY 1xksA 238 :GKIHQ T0547 494 :D 1xksA 245 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=48517 # 1s1dA.487.70 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)G487 (1s1dA)D71 because G (3-10) conformation "forbidden" or filtered. T0547 488 :EISYSKDK 1s1dA 72 :KVAVEWDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=48518 # 1c4rA.487.112 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)G487 (1c4rA)P193 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S492 (1c4rA)Y198 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1c4rA)P199 because P (beta_P) conformation "forbidden" or filtered. T0547 488 :EISY 1c4rA 194 :VIER T0547 494 :DK 1c4rA 200 :AG Number of specific fragments extracted= 2 number of extra gaps= 2 total=48520 # 1rg8A.487.76 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)Y74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1rg8A)P79 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :GEI 1rg8A 71 :GLL T0547 491 :YSKD 1rg8A 75 :GSQT Number of specific fragments extracted= 2 number of extra gaps= 2 total=48522 # 1o75A.487.117 read from T0547.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)K495 (1o75A)E126 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :GEISYSKD 1o75A 118 :GEIKFEAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=48523 # 2bh1A.487.61 read from T0547.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)S490 (2bh1A)T65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (2bh1A)I69 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :GEI 2bh1A 62 :LIL T0547 491 :YSK 2bh1A 66 :SVE T0547 495 :K 2bh1A 70 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=48526 # 1ka8A.487.9 read from T0547.t2k.many.frag # found chain 1ka8A in template set T0547 487 :GEISYSKDK 1ka8A 10 :GYLETLPQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=48527 # 1acc.487.650 read from T0547.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0547)E488 (1acc)L652 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :G 1acc 651 :G T0547 489 :ISYSKDK 1acc 653 :KEVINDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=48529 # 2bduA.487.197 read from T0547.t2k.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)K493 (2bduA)K204 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :GEISYS 2bduA 198 :GVLKGF T0547 494 :DK 2bduA 205 :GE Number of specific fragments extracted= 2 number of extra gaps= 1 total=48531 # 1a12A.487.304 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)K493 (1a12A)G319 because S (epsilon) conformation "forbidden" or filtered. T0547 487 :GEISYS 1a12A 313 :GKAYSL T0547 494 :DK 1a12A 320 :RA Number of specific fragments extracted= 2 number of extra gaps= 1 total=48533 # 1w2fA.487.232 read from T0547.t2k.many.frag # found chain 1w2fA in training set T0547 487 :GEISYSKDK 1w2fA 418 :GKTTPLPDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=48534 # 1lm8V.487.39 read from T0547.t2k.many.frag # found chain 1lm8V in template set T0547 487 :GEISYSKDK 1lm8V 93 :GEPQPYPTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48535 # 1iow.487.151 read from T0547.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0547)E488 (1iow)G153 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1iow)S155 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :G 1iow 152 :V T0547 489 :I 1iow 154 :M T0547 491 :YSKDK 1iow 156 :KVVAE Number of specific fragments extracted= 3 number of extra gaps= 2 total=48538 # 1ylhA.487.338 read from T0547.t2k.many.frag # found chain 1ylhA in template set T0547 487 :GEISYSKDK 1ylhA 319 :GSVDFDDGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=48539 # 2a8kA.487.80 read from T0547.t2k.many.frag # found chain 2a8kA in template set T0547 487 :GEISYSKDK 2a8kA 81 :GEVTQISDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=48540 # 1o7jA.487.281 read from T0547.t2k.many.frag # found chain 1o7jA in training set T0547 487 :GEISYSKDK 1o7jA 282 :GIVPPDEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48541 1xd7A expands to /projects/compbio/data/pdb/1xd7.pdb.gz 1xd7A:# 1xd7A.487.50 read from T0547.t2k.many.frag # adding 1xd7A to template set # found chain 1xd7A in template set T0547 487 :GEISYSKDK 1xd7A 51 :DILTSRAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48542 # 1crzA.487.250 read from T0547.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)K493 (1crzA)T263 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1crzA)D264 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1crzA)G265 because S (epsilon) conformation "forbidden" or filtered. T0547 487 :GEISYS 1crzA 257 :GQIRQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=48543 # 1zkdA.487.184 read from T0547.t2k.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)S492 (1zkdA)G190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1zkdA)V191 because E (beta_S) conformation "forbidden" or filtered. T0547 487 :GEISY 1zkdA 185 :GELVF T0547 494 :DK 1zkdA 192 :AA Number of specific fragments extracted= 2 number of extra gaps= 1 total=48545 # 1smxA.487.36 read from T0547.t2k.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)G487 (1smxA)G66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1smxA)A74 because P (beta_P) conformation "forbidden" or filtered. T0547 488 :EISYSKD 1smxA 67 :FLPLKEI Number of specific fragments extracted= 1 number of extra gaps= 2 total=48546 # 1zupA.487.93 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)T84 Warning: unaligning (T0547)I489 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)T84 Warning: unaligning (T0547)K493 (1zupA)F88 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1zupA)S89 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :G 1zupA 82 :G T0547 490 :SYS 1zupA 85 :KTL T0547 495 :K 1zupA 90 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=48549 # 1br9.487.172 read from T0547.t2k.many.frag # found chain 1br9 in template set T0547 487 :GEISYSKDK 1br9 173 :GSCAWYRGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48550 # 1fjrA.487.104 read from T0547.t2k.many.frag # found chain 1fjrA in template set Warning: unaligning (T0547)K493 (1fjrA)H111 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :GEISYS 1fjrA 105 :GSVSRR T0547 494 :DK 1fjrA 112 :FK Number of specific fragments extracted= 2 number of extra gaps= 1 total=48552 # 1rg8A.487.34 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)D32 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :GEI 1rg8A 29 :GTV T0547 491 :YSKDK 1rg8A 33 :GTRDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=48554 # 1qxmA.487.218 read from T0547.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)S490 (1qxmA)L208 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S492 (1qxmA)W210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1qxmA)I211 because N (gamma') conformation "forbidden" or filtered. T0547 487 :GEI 1qxmA 205 :NRY T0547 491 :Y 1qxmA 209 :T T0547 494 :DK 1qxmA 212 :QN Number of specific fragments extracted= 3 number of extra gaps= 2 total=48557 # 1cqyA.487.72 read from T0547.t2k.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)E488 (1cqyA)T491 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :G 1cqyA 490 :G T0547 489 :ISYSKDK 1cqyA 492 :VKSWQTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=48559 # 1bjt.487.573 read from T0547.t2k.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)E488 (1bjt)K983 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1bjt)S989 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :G 1bjt 982 :G T0547 489 :ISYSK 1bjt 984 :IKKYN T0547 495 :K 1bjt 990 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=48562 1jb0D expands to /projects/compbio/data/pdb/1jb0.pdb.gz 1jb0D:# 1jb0D.487.88 read from T0547.t2k.many.frag # adding 1jb0D to template set # found chain 1jb0D in template set Warning: unaligning (T0547)E488 (1jb0D)E90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1jb0D)P96 because C (cis) conformation "forbidden" or filtered. T0547 487 :G 1jb0D 89 :G T0547 489 :ISYSK 1jb0D 91 :TVLIH T0547 495 :K 1jb0D 97 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=48565 # 1suuA.487.123 read from T0547.t2k.many.frag # found chain 1suuA in training set T0547 487 :GEISYSKDK 1suuA 622 :GKIARFEST Number of specific fragments extracted= 1 number of extra gaps= 0 total=48566 # 2axwA.487.68 read from T0547.t2k.many.frag # found chain 2axwA in training set Warning: unaligning (T0547)G487 (2axwA)D69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (2axwA)G70 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (2axwA)E77 because P (beta_P) conformation "forbidden" or filtered. T0547 489 :ISYSKD 2axwA 71 :WSPVKG Number of specific fragments extracted= 1 number of extra gaps= 2 total=48567 # 1s1dA.488.71 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)P496 (1s1dA)D80 because E (beta_S) conformation "forbidden" or filtered. T0547 488 :EISYSKDK 1s1dA 72 :KVAVEWDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=48568 # 1c4rA.488.113 read from T0547.t2k.many.frag # found chain 1c4rA in template set T0547 488 :EISYSKDKP 1c4rA 194 :VIERYPAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=48569 # 1xksA.488.174 read from T0547.t2k.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)S492 (1xksA)H243 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1xksA)L245 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1xksA)Q247 because L (left) conformation "forbidden" or filtered. T0547 488 :EISY 1xksA 239 :KIHQ T0547 493 :K 1xksA 244 :I T0547 495 :K 1xksA 246 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=48572 # 1o75A.488.118 read from T0547.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)D494 (1o75A)V125 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1o75A)G127 because T (delta_L) conformation "forbidden" or filtered. T0547 488 :EISYSK 1o75A 119 :EIKFEA T0547 495 :K 1o75A 126 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=48574 # 2bh1A.488.62 read from T0547.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)S490 (2bh1A)T65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (2bh1A)E68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (2bh1A)P70 because P (beta_P) conformation "forbidden" or filtered. T0547 488 :EI 2bh1A 63 :IL T0547 491 :YS 2bh1A 66 :SV T0547 494 :D 2bh1A 69 :I T0547 496 :P 2bh1A 71 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=48578 # 1rg8A.488.77 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)E488 (1rg8A)L72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1rg8A)Y74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1rg8A)N80 because Y (epsilon') conformation "forbidden" or filtered. T0547 489 :I 1rg8A 73 :L T0547 491 :YSKDK 1rg8A 75 :GSQTP Number of specific fragments extracted= 2 number of extra gaps= 3 total=48580 # 1ka8A.488.10 read from T0547.t2k.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)P496 (1ka8A)S19 because G (3-10) conformation "forbidden" or filtered. T0547 488 :EISYSKDK 1ka8A 11 :YLETLPQT Number of specific fragments extracted= 1 number of extra gaps= 1 total=48581 # 1a12A.488.305 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)S492 (1a12A)L318 because Y (epsilon') conformation "forbidden" or filtered. T0547 488 :EISY 1a12A 314 :KAYS T0547 493 :KDKP 1a12A 319 :GRAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=48583 # 1acc.488.651 read from T0547.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0547)E488 (1acc)L652 because P (beta_P) conformation "forbidden" or filtered. T0547 489 :ISYSKDKP 1acc 653 :KEVINDRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=48584 # 1iow.488.152 read from T0547.t2k.many.frag # found chain 1iow in template set T0547 488 :EISYSKDKP 1iow 153 :GMSKVVAEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=48585 # 1xd7A.488.51 read from T0547.t2k.many.frag # found chain 1xd7A in template set Warning: unaligning (T0547)S492 (1xd7A)R56 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1xd7A)G58 because T (delta_L) conformation "forbidden" or filtered. T0547 488 :EISY 1xd7A 52 :ILTS T0547 493 :K 1xd7A 57 :A T0547 495 :KP 1xd7A 59 :VP Number of specific fragments extracted= 3 number of extra gaps= 2 total=48588 # 1w2fA.488.233 read from T0547.t2k.many.frag # found chain 1w2fA in training set T0547 488 :EISYSKDKP 1w2fA 419 :KTTPLPDGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=48589 # 1qxmA.488.219 read from T0547.t2k.many.frag # found chain 1qxmA in training set T0547 488 :EISYSKDKP 1qxmA 206 :RYLTWIQNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=48590 # 1o7jA.488.282 read from T0547.t2k.many.frag # found chain 1o7jA in training set T0547 488 :EISYSKDKP 1o7jA 283 :IVPPDEELP Number of specific fragments extracted= 1 number of extra gaps= 0 total=48591 # 1smxA.488.37 read from T0547.t2k.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)S490 (1smxA)P69 because P (beta_P) conformation "forbidden" or filtered. T0547 488 :EI 1smxA 67 :FL T0547 491 :YSKDKP 1smxA 70 :LKEIAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=48593 # 1zkdA.488.185 read from T0547.t2k.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)S492 (1zkdA)G190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1zkdA)A192 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1zkdA)D194 because E (beta_S) conformation "forbidden" or filtered. T0547 488 :EISY 1zkdA 186 :ELVF T0547 493 :K 1zkdA 191 :V T0547 495 :K 1zkdA 193 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=48596 # 1zupA.488.94 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)T84 Warning: unaligning (T0547)I489 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)T84 Warning: unaligning (T0547)K493 (1zupA)F88 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1zupA)S89 because Y (epsilon') conformation "forbidden" or filtered. T0547 490 :SYS 1zupA 85 :KTL T0547 495 :KP 1zupA 90 :PD Number of specific fragments extracted= 2 number of extra gaps= 2 total=48598 # 1gqeA.488.228 read from T0547.t2k.many.frag # found chain 1gqeA in template set T0547 488 :EISYSKDKP 1gqeA 229 :DIDIEINPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48599 # 1crzA.488.251 read from T0547.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)P496 (1crzA)R266 because G (3-10) conformation "forbidden" or filtered. T0547 488 :EISYSKDK 1crzA 258 :QIRQVTDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=48600 # 1jb0D.488.89 read from T0547.t2k.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)D494 (1jb0D)P96 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1jb0D)D98 because G (3-10) conformation "forbidden" or filtered. T0547 488 :EISYSK 1jb0D 90 :ETVLIH T0547 495 :K 1jb0D 97 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=48602 # 1fjrA.488.105 read from T0547.t2k.many.frag # found chain 1fjrA in template set T0547 488 :EISYSKDKP 1fjrA 106 :SVSRRHFKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=48603 # 1lm8V.488.40 read from T0547.t2k.many.frag # found chain 1lm8V in template set T0547 488 :EISYSKDKP 1lm8V 94 :EPQPYPTLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=48604 # 1ylhA.488.339 read from T0547.t2k.many.frag # found chain 1ylhA in template set T0547 488 :EISYSKDKP 1ylhA 320 :SVDFDDGSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=48605 # 1br9.488.173 read from T0547.t2k.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)S490 (1br9)A176 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1br9)G180 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 because last residue in template chain is (1br9)A182 T0547 488 :EI 1br9 174 :SC T0547 491 :YSK 1br9 177 :WYR T0547 495 :K 1br9 181 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=48608 # 1rg8A.488.35 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)D32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1rg8A)R35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1rg8A)S38 because G (3-10) conformation "forbidden" or filtered. T0547 488 :EI 1rg8A 30 :TV T0547 491 :YS 1rg8A 33 :GT T0547 494 :DK 1rg8A 36 :DR Number of specific fragments extracted= 3 number of extra gaps= 3 total=48611 # 2a8kA.488.81 read from T0547.t2k.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)K493 (2a8kA)S87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2a8kA)T90 because G (3-10) conformation "forbidden" or filtered. T0547 488 :EISYS 2a8kA 82 :EVTQI T0547 494 :DK 2a8kA 88 :DK Number of specific fragments extracted= 2 number of extra gaps= 2 total=48613 # 2axwA.488.69 read from T0547.t2k.many.frag # found chain 2axwA in training set Warning: unaligning (T0547)E488 (2axwA)G70 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2axwA)G78 because T (delta_L) conformation "forbidden" or filtered. T0547 489 :ISYSKDK 2axwA 71 :WSPVKGE Number of specific fragments extracted= 1 number of extra gaps= 2 total=48614 1kkeA expands to /projects/compbio/data/pdb/1kke.pdb.gz 1kkeA:# 1kkeA.488.127 read from T0547.t2k.many.frag # adding 1kkeA to template set # found chain 1kkeA in template set Warning: unaligning (T0547)S492 (1kkeA)P377 because C (cis) conformation "forbidden" or filtered. T0547 488 :EISY 1kkeA 373 :GLLP T0547 493 :KDKP 1kkeA 378 :LLTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48616 # 1flmA.488.87 read from T0547.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0547)D494 (1flmA)D94 because Y (epsilon') conformation "forbidden" or filtered. T0547 488 :EISYSK 1flmA 88 :SAAFRT T0547 495 :KP 1flmA 95 :GP Number of specific fragments extracted= 2 number of extra gaps= 1 total=48618 1zsoA expands to /projects/compbio/data/pdb/1zso.pdb.gz 1zsoA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zsoA.488.80 read from T0547.t2k.many.frag # adding 1zsoA to template set # found chain 1zsoA in template set Warning: unaligning (T0547)D494 (1zsoA)T79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1zsoA)K80 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1zsoA)N81 because L (left) conformation "forbidden" or filtered. T0547 488 :EISYSK 1zsoA 73 :TINFVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=48619 # 1s1dA.489.72 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)P496 (1s1dA)D80 because E (beta_S) conformation "forbidden" or filtered. T0547 489 :ISYSKDK 1s1dA 73 :VAVEWDK T0547 497 :L 1s1dA 81 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=48621 # 1c4rA.489.114 read from T0547.t2k.many.frag # found chain 1c4rA in template set T0547 489 :ISYSKDKPL 1c4rA 195 :IERYPAGRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=48622 # 1o75A.489.119 read from T0547.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)P496 (1o75A)G127 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1o75A)A128 because Y (epsilon') conformation "forbidden" or filtered. T0547 489 :ISYSKDK 1o75A 120 :IKFEAVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=48623 # 1iow.489.153 read from T0547.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0547)K493 (1iow)V158 because P (beta_P) conformation "forbidden" or filtered. T0547 489 :ISYS 1iow 154 :MSKV T0547 494 :DKPL 1iow 159 :AENA Number of specific fragments extracted= 2 number of extra gaps= 1 total=48625 # 2bh1A.489.63 read from T0547.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)S490 (2bh1A)T65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (2bh1A)E68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (2bh1A)P70 because P (beta_P) conformation "forbidden" or filtered. T0547 489 :I 2bh1A 64 :L T0547 491 :YS 2bh1A 66 :SV T0547 494 :D 2bh1A 69 :I T0547 496 :PL 2bh1A 71 :PG Number of specific fragments extracted= 4 number of extra gaps= 3 total=48629 # 1a12A.489.306 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)S492 (1a12A)L318 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1a12A)Y323 because T (delta_L) conformation "forbidden" or filtered. T0547 489 :ISY 1a12A 315 :AYS T0547 493 :KDKP 1a12A 319 :GRAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=48631 # 1xd7A.489.52 read from T0547.t2k.many.frag # found chain 1xd7A in template set Warning: unaligning (T0547)D494 (1xd7A)G58 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1xd7A)G61 because S (epsilon) conformation "forbidden" or filtered. T0547 489 :ISYSK 1xd7A 53 :LTSRA T0547 495 :KP 1xd7A 59 :VP Number of specific fragments extracted= 2 number of extra gaps= 2 total=48633 # 1gqeA.489.229 read from T0547.t2k.many.frag # found chain 1gqeA in template set T0547 489 :ISYSKDKPL 1gqeA 230 :IDIEINPAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48634 # 1acc.489.652 read from T0547.t2k.many.frag # found chain 1acc in template set T0547 489 :ISYSKDKPL 1acc 653 :KEVINDRYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48635 # 1qxmA.489.220 read from T0547.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)S492 (1qxmA)W210 because P (beta_P) conformation "forbidden" or filtered. T0547 489 :ISY 1qxmA 207 :YLT T0547 493 :KDKPL 1qxmA 211 :IQNSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=48637 # 1ka8A.489.11 read from T0547.t2k.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)P496 (1ka8A)S19 because G (3-10) conformation "forbidden" or filtered. T0547 489 :ISYSKDK 1ka8A 12 :LETLPQT T0547 497 :L 1ka8A 20 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=48639 # 1rg8A.489.78 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)Y74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1rg8A)N80 because Y (epsilon') conformation "forbidden" or filtered. T0547 489 :I 1rg8A 73 :L T0547 491 :YSKDK 1rg8A 75 :GSQTP T0547 497 :L 1rg8A 81 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=48642 # 1xksA.489.175 read from T0547.t2k.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)S490 (1xksA)H241 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1xksA)P246 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1xksA)Q247 because L (left) conformation "forbidden" or filtered. T0547 489 :I 1xksA 240 :I T0547 491 :YSKD 1xksA 242 :QHIL T0547 497 :L 1xksA 248 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=48645 # 1o7jA.489.283 read from T0547.t2k.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)S492 (1o7jA)D287 because D (zeta) conformation "forbidden" or filtered. T0547 489 :ISY 1o7jA 284 :VPP T0547 493 :KDKPL 1o7jA 288 :EELPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48647 # 2axwA.489.70 read from T0547.t2k.many.frag # found chain 2axwA in training set Warning: unaligning (T0547)K493 (2axwA)K75 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (2axwA)G76 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2axwA)G78 because T (delta_L) conformation "forbidden" or filtered. T0547 489 :ISYS 2axwA 71 :WSPV T0547 495 :K 2axwA 77 :E T0547 497 :L 2axwA 79 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=48650 # 1kkeA.489.128 read from T0547.t2k.many.frag # found chain 1kkeA in template set Warning: unaligning (T0547)S492 (1kkeA)P377 because C (cis) conformation "forbidden" or filtered. T0547 489 :ISY 1kkeA 374 :LLP T0547 493 :KDKPL 1kkeA 378 :LLTGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=48652 # 1zupA.489.95 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)I489 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)T84 Warning: unaligning (T0547)D494 (1zupA)S89 because Y (epsilon') conformation "forbidden" or filtered. T0547 490 :SYSK 1zupA 85 :KTLF T0547 495 :KPL 1zupA 90 :PDK Number of specific fragments extracted= 2 number of extra gaps= 2 total=48654 # 1w2fA.489.234 read from T0547.t2k.many.frag # found chain 1w2fA in training set Warning: unaligning (T0547)K495 (1w2fA)G426 because T (delta_L) conformation "forbidden" or filtered. T0547 489 :ISYSKD 1w2fA 420 :TTPLPD T0547 496 :PL 1w2fA 427 :QI Number of specific fragments extracted= 2 number of extra gaps= 1 total=48656 # 1rg8A.489.36 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)D32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1rg8A)S38 because G (3-10) conformation "forbidden" or filtered. T0547 489 :I 1rg8A 31 :V T0547 491 :YSKDK 1rg8A 33 :GTRDR T0547 497 :L 1rg8A 39 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=48659 # 1jb0D.489.90 read from T0547.t2k.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)D494 (1jb0D)P96 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1jb0D)D98 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1jb0D)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 489 :ISYSK 1jb0D 91 :TVLIH T0547 495 :K 1jb0D 97 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=48661 # 1bli.489.398 read from T0547.t2k.many.frag # found chain 1bli in template set T0547 489 :ISYSKDKPL 1bli 399 :QHDYFDHHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=48662 # 1rg8A.489.27 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)K493 (1rg8A)L26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1rg8A)G29 because T (delta_L) conformation "forbidden" or filtered. T0547 489 :ISYS 1rg8A 22 :FLRI T0547 494 :DK 1rg8A 27 :PD T0547 497 :L 1rg8A 30 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=48665 # 1smxA.489.38 read from T0547.t2k.many.frag # found chain 1smxA in training set T0547 489 :ISYSKDKPL 1smxA 68 :LPLKEIARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=48666 # 1crzA.489.252 read from T0547.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)K495 (1crzA)G265 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1crzA)R266 because G (3-10) conformation "forbidden" or filtered. T0547 489 :ISYSKD 1crzA 259 :IRQVTD T0547 497 :L 1crzA 267 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=48668 # 1flmA.489.88 read from T0547.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0547)K493 (1flmA)T93 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1flmA)G95 because S (epsilon) conformation "forbidden" or filtered. T0547 489 :ISYS 1flmA 89 :AAFR T0547 494 :D 1flmA 94 :D T0547 496 :PL 1flmA 96 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=48671 # 1lm8V.489.41 read from T0547.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)K495 (1lm8V)L101 because E (beta_S) conformation "forbidden" or filtered. T0547 489 :ISYSKD 1lm8V 95 :PQPYPT T0547 496 :PL 1lm8V 102 :PP Number of specific fragments extracted= 2 number of extra gaps= 1 total=48673 1ois expands to /projects/compbio/data/pdb/1ois.pdb.gz 1ois:Warning: there is no chain 1ois will retry with 1oisA # 1ois.489.164 read from T0547.t2k.many.frag # adding 1ois to template set # found chain 1ois in template set Warning: unaligning (T0547)S492 (1ois)R308 because P (beta_P) conformation "forbidden" or filtered. T0547 489 :ISY 1ois 305 :LKR T0547 493 :KDKPL 1ois 309 :VNPED Number of specific fragments extracted= 2 number of extra gaps= 1 total=48675 # 1vl7A.489.58 read from T0547.t2k.many.frag # found chain 1vl7A in training set T0547 489 :ISYSKDKPL 1vl7A 47 :IYIYVSGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48676 # 1fjrA.489.106 read from T0547.t2k.many.frag # found chain 1fjrA in template set Warning: unaligning (T0547)K493 (1fjrA)H111 because P (beta_P) conformation "forbidden" or filtered. T0547 489 :ISYS 1fjrA 107 :VSRR T0547 494 :DKPL 1fjrA 112 :FKNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=48678 # 1i88A.489.253 read from T0547.t2k.many.frag # found chain 1i88A in training set Warning: unaligning (T0547)D494 (1i88A)R259 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1i88A)A261 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1i88A)G262 because S (epsilon) conformation "forbidden" or filtered. T0547 489 :ISYSK 1i88A 254 :IDVHL T0547 495 :K 1i88A 260 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=48680 # 1s1dA.490.73 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)P496 (1s1dA)D80 because E (beta_S) conformation "forbidden" or filtered. T0547 490 :SYSKDK 1s1dA 74 :AVEWDK T0547 497 :LF 1s1dA 81 :HG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48682 # 1c4rA.490.115 read from T0547.t2k.many.frag # found chain 1c4rA in template set T0547 490 :SYSKDKPLF 1c4rA 196 :ERYPAGRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48683 # 1o75A.490.120 read from T0547.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)D494 (1o75A)V125 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1o75A)E126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1o75A)G127 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1o75A)A128 because Y (epsilon') conformation "forbidden" or filtered. T0547 490 :SYSK 1o75A 121 :KFEA T0547 498 :F 1o75A 129 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=48685 # 1gqeA.490.230 read from T0547.t2k.many.frag # found chain 1gqeA in template set T0547 490 :SYSKDKPLF 1gqeA 231 :DIEINPADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48686 # 1iow.490.154 read from T0547.t2k.many.frag # found chain 1iow in template set T0547 490 :SYSKDKPLF 1iow 155 :SKVVAENAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48687 # 1a12A.490.307 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)K493 (1a12A)G319 because S (epsilon) conformation "forbidden" or filtered. T0547 490 :SYS 1a12A 316 :YSL T0547 494 :DKPLF 1a12A 320 :RAEYG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48689 # 1ka8A.490.12 read from T0547.t2k.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)P496 (1ka8A)S19 because G (3-10) conformation "forbidden" or filtered. T0547 490 :SYSKDK 1ka8A 13 :ETLPQT T0547 497 :LF 1ka8A 20 :GM Number of specific fragments extracted= 2 number of extra gaps= 1 total=48691 # 1xd7A.490.53 read from T0547.t2k.many.frag # found chain 1xd7A in template set Warning: unaligning (T0547)D494 (1xd7A)G58 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1xd7A)G61 because S (epsilon) conformation "forbidden" or filtered. T0547 490 :SYSK 1xd7A 54 :TSRA T0547 495 :KP 1xd7A 59 :VP T0547 498 :F 1xd7A 62 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=48694 # 1kkeA.490.129 read from T0547.t2k.many.frag # found chain 1kkeA in template set Warning: unaligning (T0547)S492 (1kkeA)P377 because C (cis) conformation "forbidden" or filtered. T0547 490 :SY 1kkeA 375 :LP T0547 493 :KDKPLF 1kkeA 378 :LLTGDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=48696 # 2axwA.490.71 read from T0547.t2k.many.frag # found chain 2axwA in training set Warning: unaligning (T0547)K493 (2axwA)K75 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (2axwA)G76 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2axwA)G78 because T (delta_L) conformation "forbidden" or filtered. T0547 490 :SYS 2axwA 72 :SPV T0547 495 :K 2axwA 77 :E T0547 497 :LF 2axwA 79 :GK Number of specific fragments extracted= 3 number of extra gaps= 2 total=48699 1xniA expands to /projects/compbio/data/pdb/1xni.pdb.gz 1xniA:# 1xniA.490.40 read from T0547.t2k.many.frag # adding 1xniA to template set # found chain 1xniA in template set Warning: unaligning (T0547)S490 (1xniA)C1525 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1xniA)D1531 because G (3-10) conformation "forbidden" or filtered. T0547 491 :YSKDK 1xniA 1526 :DVLGK T0547 497 :LF 1xniA 1532 :IL Number of specific fragments extracted= 2 number of extra gaps= 2 total=48701 # 1o7jA.490.284 read from T0547.t2k.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)L497 (1o7jA)G292 because S (epsilon) conformation "forbidden" or filtered. T0547 490 :SYSKDKP 1o7jA 285 :PPDEELP T0547 498 :F 1o7jA 293 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=48703 # 1w2fA.490.235 read from T0547.t2k.many.frag # found chain 1w2fA in training set Warning: unaligning (T0547)K493 (1w2fA)P424 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1w2fA)G426 because T (delta_L) conformation "forbidden" or filtered. T0547 490 :SYS 1w2fA 421 :TPL T0547 494 :D 1w2fA 425 :D T0547 496 :PLF 1w2fA 427 :QIL Number of specific fragments extracted= 3 number of extra gaps= 2 total=48706 # 1acc.490.653 read from T0547.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0547)S490 (1acc)E654 because D (zeta) conformation "forbidden" or filtered. T0547 491 :YSKDKPLF 1acc 655 :VINDRYDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=48707 # 1flmA.490.89 read from T0547.t2k.many.frag # found chain 1flmA in training set T0547 490 :SYSKDKPLF 1flmA 90 :AFRTDGPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=48708 # 1qxmA.490.221 read from T0547.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)F498 (1qxmA)N216 because L (left) conformation "forbidden" or filtered. T0547 490 :SYSKDKPL 1qxmA 208 :LTWIQNSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=48709 # 1smxA.490.39 read from T0547.t2k.many.frag # found chain 1smxA in training set T0547 490 :SYSKDKPLF 1smxA 69 :PLKEIAREY Number of specific fragments extracted= 1 number of extra gaps= 0 total=48710 # 1bli.490.399 read from T0547.t2k.many.frag # found chain 1bli in template set T0547 490 :SYSKDKPLF 1bli 400 :HDYFDHHDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=48711 # 1jb0D.490.91 read from T0547.t2k.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)D494 (1jb0D)P96 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1jb0D)D98 because G (3-10) conformation "forbidden" or filtered. T0547 490 :SYSK 1jb0D 92 :VLIH T0547 495 :K 1jb0D 97 :K T0547 497 :LF 1jb0D 99 :GV Number of specific fragments extracted= 3 number of extra gaps= 2 total=48714 # 2f8aA.490.151 read from T0547.t2k.many.frag # found chain 2f8aA in training set T0547 490 :SYSKDKPLF 2f8aA 140 :ALMTDPKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=48715 # 1rg8A.490.28 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S492 (1rg8A)I25 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1rg8A)G29 because T (delta_L) conformation "forbidden" or filtered. T0547 490 :SY 1rg8A 23 :LR T0547 493 :KDK 1rg8A 26 :LPD T0547 497 :LF 1rg8A 30 :TV Number of specific fragments extracted= 3 number of extra gaps= 2 total=48718 # 1rg8A.490.37 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)D32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1rg8A)S38 because G (3-10) conformation "forbidden" or filtered. T0547 491 :YSKDK 1rg8A 33 :GTRDR T0547 497 :LF 1rg8A 39 :DQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=48720 # 1i88A.490.254 read from T0547.t2k.many.frag # found chain 1i88A in training set Warning: unaligning (T0547)D494 (1i88A)R259 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1i88A)A261 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1i88A)G262 because S (epsilon) conformation "forbidden" or filtered. T0547 490 :SYSK 1i88A 255 :DVHL T0547 495 :K 1i88A 260 :E T0547 498 :F 1i88A 263 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=48723 # 1fjrA.490.107 read from T0547.t2k.many.frag # found chain 1fjrA in template set T0547 490 :SYSKDKPLF 1fjrA 108 :SRRHFKNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48724 # 1z6fA.490.310 read from T0547.t2k.many.frag # found chain 1z6fA in training set T0547 490 :SYSKDKPLF 1z6fA 311 :SYVLNSSEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48725 # 1zupA.490.96 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)K493 (1zupA)F88 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1zupA)S89 because Y (epsilon') conformation "forbidden" or filtered. T0547 490 :SYS 1zupA 85 :KTL T0547 495 :KPLF 1zupA 90 :PDKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=48727 # 1crzA.490.253 read from T0547.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)D494 (1crzA)D264 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1crzA)R266 because G (3-10) conformation "forbidden" or filtered. T0547 490 :SYSK 1crzA 260 :RQVT T0547 495 :K 1crzA 265 :G T0547 497 :LF 1crzA 267 :SN Number of specific fragments extracted= 3 number of extra gaps= 2 total=48730 # 1ois.490.165 read from T0547.t2k.many.frag # found chain 1ois in template set T0547 490 :SYSKDKPLF 1ois 306 :KRRVNPEDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=48731 # 1rg8A.490.79 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)P496 (1rg8A)N80 because Y (epsilon') conformation "forbidden" or filtered. T0547 490 :SYSKDK 1rg8A 74 :YGSQTP T0547 497 :LF 1rg8A 81 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=48733 # 1po5A.490.440 read from T0547.t2k.many.frag # found chain 1po5A in training set Warning: unaligning (T0547)S490 (1po5A)A460 because Y (epsilon') conformation "forbidden" or filtered. T0547 491 :YSKDKPLF 1po5A 461 :SPVPPEDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=48734 # 1s1dA.491.74 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)P496 (1s1dA)D80 because E (beta_S) conformation "forbidden" or filtered. T0547 491 :YSKDK 1s1dA 75 :VEWDK T0547 497 :LFL 1s1dA 81 :HGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=48736 # 1kkeA.491.130 read from T0547.t2k.many.frag # found chain 1kkeA in template set Warning: unaligning (T0547)S492 (1kkeA)P377 because C (cis) conformation "forbidden" or filtered. T0547 491 :Y 1kkeA 376 :P T0547 493 :KDKPLFL 1kkeA 378 :LLTGDTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=48738 # 1xd7A.491.54 read from T0547.t2k.many.frag # found chain 1xd7A in template set Warning: unaligning (T0547)D494 (1xd7A)G58 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1xd7A)G61 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)L499 (1xd7A)S63 because Y (epsilon') conformation "forbidden" or filtered. T0547 491 :YSK 1xd7A 55 :SRA T0547 495 :KP 1xd7A 59 :VP T0547 498 :F 1xd7A 62 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=48741 # 1o75A.491.121 read from T0547.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)K493 (1o75A)A124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1o75A)G127 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1o75A)A128 because Y (epsilon') conformation "forbidden" or filtered. T0547 491 :YS 1o75A 122 :FE T0547 494 :DK 1o75A 125 :VE T0547 498 :FL 1o75A 129 :VA Number of specific fragments extracted= 3 number of extra gaps= 2 total=48744 # 1gqeA.491.231 read from T0547.t2k.many.frag # found chain 1gqeA in template set T0547 491 :YSKDKPLFL 1gqeA 232 :IEINPADLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=48745 # 1a12A.491.308 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)S492 (1a12A)L318 because Y (epsilon') conformation "forbidden" or filtered. T0547 491 :Y 1a12A 317 :S T0547 493 :KDKPLFL 1a12A 319 :GRAEYGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=48747 # 1c4rA.491.116 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)K495 (1c4rA)G231 because P (beta_P) conformation "forbidden" or filtered. T0547 491 :YSKD 1c4rA 197 :RYPA T0547 496 :PLFL 1c4rA 232 :RQLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=48749 # 1ka8A.491.13 read from T0547.t2k.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)P496 (1ka8A)S19 because G (3-10) conformation "forbidden" or filtered. T0547 491 :YSKDK 1ka8A 14 :TLPQT T0547 497 :LFL 1ka8A 20 :GMY Number of specific fragments extracted= 2 number of extra gaps= 1 total=48751 # 1flmA.491.90 read from T0547.t2k.many.frag # found chain 1flmA in training set T0547 491 :YSKDKPLFL 1flmA 91 :FRTDGPEFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=48752 # 1iow.491.155 read from T0547.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0547)D494 (1iow)A159 because S (epsilon) conformation "forbidden" or filtered. T0547 491 :YSK 1iow 156 :KVV T0547 495 :KPLFL 1iow 160 :ENALQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=48754 # 1xniA.491.41 read from T0547.t2k.many.frag # found chain 1xniA in template set Warning: unaligning (T0547)P496 (1xniA)D1531 because G (3-10) conformation "forbidden" or filtered. T0547 491 :YSKDK 1xniA 1526 :DVLGK T0547 497 :LFL 1xniA 1532 :ILL Number of specific fragments extracted= 2 number of extra gaps= 1 total=48756 # 1smxA.491.40 read from T0547.t2k.many.frag # found chain 1smxA in training set T0547 491 :YSKDKPLFL 1smxA 70 :LKEIAREYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=48757 # 1w2fA.491.236 read from T0547.t2k.many.frag # found chain 1w2fA in training set Warning: unaligning (T0547)K495 (1w2fA)G426 because T (delta_L) conformation "forbidden" or filtered. T0547 491 :YSKD 1w2fA 422 :PLPD T0547 496 :PLFL 1w2fA 427 :QILD Number of specific fragments extracted= 2 number of extra gaps= 1 total=48759 # 2axwA.491.72 read from T0547.t2k.many.frag # found chain 2axwA in training set Warning: unaligning (T0547)P496 (2axwA)G78 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L499 (2axwA)G81 because S (epsilon) conformation "forbidden" or filtered. T0547 491 :YSKDK 2axwA 73 :PVKGE T0547 497 :LF 2axwA 79 :GK Number of specific fragments extracted= 2 number of extra gaps= 2 total=48761 # 1o7jA.491.285 read from T0547.t2k.many.frag # found chain 1o7jA in training set T0547 491 :YSKDKPLFL 1o7jA 286 :PDEELPGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48762 # 2f8aA.491.152 read from T0547.t2k.many.frag # found chain 2f8aA in training set T0547 491 :YSKDKPLFL 2f8aA 141 :LMTDPKLIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=48763 # 1vns.491.79 read from T0547.t2k.many.frag # found chain 1vns in training set Warning: unaligning (T0547)S492 (1vns)D81 because G (3-10) conformation "forbidden" or filtered. T0547 491 :Y 1vns 80 :P T0547 493 :KDKPLFL 1vns 82 :TENAAYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=48765 # 1xipA.491.315 read from T0547.t2k.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)P496 (1xipA)E320 because G (3-10) conformation "forbidden" or filtered. T0547 491 :YSKDK 1xipA 315 :PSQDS T0547 497 :LFL 1xipA 321 :RAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=48767 # 1jb0D.491.92 read from T0547.t2k.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)D494 (1jb0D)P96 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1jb0D)D98 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1jb0D)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 491 :YSK 1jb0D 93 :LIH T0547 495 :K 1jb0D 97 :K T0547 498 :FL 1jb0D 100 :VF Number of specific fragments extracted= 3 number of extra gaps= 2 total=48770 # 1qxmA.491.222 read from T0547.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)F498 (1qxmA)N216 because L (left) conformation "forbidden" or filtered. T0547 491 :YSKDKPL 1qxmA 209 :TWIQNSN T0547 499 :L 1qxmA 217 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=48772 # 1z6fA.491.311 read from T0547.t2k.many.frag # found chain 1z6fA in training set T0547 491 :YSKDKPLFL 1z6fA 312 :YVLNSSELH Number of specific fragments extracted= 1 number of extra gaps= 0 total=48773 # 1acc.491.654 read from T0547.t2k.many.frag # found chain 1acc in template set T0547 491 :YSKDKPLFL 1acc 655 :VINDRYDML Number of specific fragments extracted= 1 number of extra gaps= 0 total=48774 # 1bli.491.400 read from T0547.t2k.many.frag # found chain 1bli in template set Warning: unaligning (T0547)K493 (1bli)F403 because D (zeta) conformation "forbidden" or filtered. T0547 491 :YS 1bli 401 :DY T0547 494 :DKPLFL 1bli 404 :DHHDIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=48776 # 1ucsA.491.46 read from T0547.t2k.many.frag # found chain 1ucsA in training set Warning: unaligning (T0547)K493 (1ucsA)V49 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1ucsA)L51 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1ucsA)G52 because T (delta_L) conformation "forbidden" or filtered. T0547 491 :YS 1ucsA 47 :RA T0547 494 :D 1ucsA 50 :P T0547 497 :LFL 1ucsA 53 :TTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=48779 # 1po5A.491.441 read from T0547.t2k.many.frag # found chain 1po5A in training set T0547 491 :YSKDKPLFL 1po5A 461 :SPVPPEDID Number of specific fragments extracted= 1 number of extra gaps= 0 total=48780 # 1i88A.491.255 read from T0547.t2k.many.frag # found chain 1i88A in training set Warning: unaligning (T0547)P496 (1i88A)A261 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1i88A)G262 because S (epsilon) conformation "forbidden" or filtered. T0547 491 :YSKDK 1i88A 256 :VHLRE T0547 498 :FL 1i88A 263 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=48782 # 1w9zA.491.239 read from T0547.t2k.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE in next template residue (1w9zA)S244 Warning: unaligning (T0547)K495 because of BadResidue code BAD_PEPTIDE at template residue (1w9zA)S244 Warning: unaligning (T0547)P496 (1w9zA)G245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1w9zA)S246 because Y (epsilon') conformation "forbidden" or filtered. T0547 491 :YSK 1w9zA 240 :TSA T0547 498 :FL 1w9zA 247 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=48784 # 1rg8A.491.29 read from T0547.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)P496 (1rg8A)G29 because T (delta_L) conformation "forbidden" or filtered. T0547 491 :YSKDK 1rg8A 24 :RILPD T0547 497 :LFL 1rg8A 30 :TVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=48786 # 1s1dA.491.76 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)D494 (1s1dA)D80 because E (beta_S) conformation "forbidden" or filtered. T0547 491 :YSK 1s1dA 77 :WDK T0547 495 :KPLFL 1s1dA 81 :HGVLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=48788 # 1zupA.491.97 read from T0547.t2k.many.frag # found chain 1zupA in template set T0547 491 :YSKDKPLFL 1zupA 86 :TLFSPDKPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=48789 # 1s1dA.492.75 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)P496 (1s1dA)D80 because E (beta_S) conformation "forbidden" or filtered. T0547 492 :SKDK 1s1dA 76 :EWDK T0547 497 :LFLH 1s1dA 81 :HGVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=48791 # 1kkeA.492.131 read from T0547.t2k.many.frag # found chain 1kkeA in template set Warning: unaligning (T0547)S492 (1kkeA)P377 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1kkeA)L378 because P (beta_P) conformation "forbidden" or filtered. T0547 494 :DKPLFLH 1kkeA 379 :LTGDTEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=48792 # 1vns.492.80 read from T0547.t2k.many.frag # found chain 1vns in training set Warning: unaligning (T0547)H500 (1vns)L89 because P (beta_P) conformation "forbidden" or filtered. T0547 492 :SKDKPLFL 1vns 81 :DTENAAYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=48793 # 1gqeA.492.232 read from T0547.t2k.many.frag # found chain 1gqeA in template set T0547 492 :SKDKPLFLH 1gqeA 233 :EINPADLRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=48794 # 1xd7A.492.55 read from T0547.t2k.many.frag # found chain 1xd7A in template set Warning: unaligning (T0547)D494 (1xd7A)G58 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1xd7A)G61 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1xd7A)A62 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :SK 1xd7A 56 :RA T0547 495 :KP 1xd7A 59 :VP T0547 499 :LH 1xd7A 63 :SL Number of specific fragments extracted= 3 number of extra gaps= 2 total=48797 # 1a12A.492.309 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)S492 (1a12A)L318 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1a12A)G319 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1a12A)R320 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1a12A)Y323 because T (delta_L) conformation "forbidden" or filtered. T0547 495 :KP 1a12A 321 :AE T0547 498 :FLH 1a12A 324 :GRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=48799 # 1ka8A.492.14 read from T0547.t2k.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)P496 (1ka8A)S19 because G (3-10) conformation "forbidden" or filtered. T0547 492 :SKDK 1ka8A 15 :LPQT T0547 497 :LFLH 1ka8A 20 :GMYM Number of specific fragments extracted= 2 number of extra gaps= 1 total=48801 # 1flmA.492.91 read from T0547.t2k.many.frag # found chain 1flmA in training set T0547 492 :SKDKPLFLH 1flmA 92 :RTDGPEFEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48802 # 1xipA.492.316 read from T0547.t2k.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)P496 (1xipA)E320 because G (3-10) conformation "forbidden" or filtered. T0547 492 :SKDK 1xipA 316 :SQDS T0547 497 :LFLH 1xipA 321 :RAVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=48804 # 1w2fA.492.237 read from T0547.t2k.many.frag # found chain 1w2fA in training set Warning: unaligning (T0547)H500 (1w2fA)H431 because L (left) conformation "forbidden" or filtered. T0547 492 :SKDKPLFL 1w2fA 423 :LPDGQILD Number of specific fragments extracted= 1 number of extra gaps= 1 total=48805 # 1s1dA.492.77 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)K495 (1s1dA)H81 because E (beta_S) conformation "forbidden" or filtered. T0547 492 :SKD 1s1dA 78 :DKD T0547 496 :PLFLH 1s1dA 82 :GVLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=48807 # 1l8aA.492.429 read from T0547.t2k.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)F498 (1l8aA)L436 because L (left) conformation "forbidden" or filtered. T0547 492 :SKDKPL 1l8aA 430 :DADIEK T0547 499 :LH 1l8aA 437 :PY Number of specific fragments extracted= 2 number of extra gaps= 1 total=48809 # 1smxA.492.41 read from T0547.t2k.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)K493 (1smxA)E72 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1smxA)I73 because E (beta_S) conformation "forbidden" or filtered. T0547 492 :S 1smxA 71 :K T0547 495 :KPLFLH 1smxA 74 :AREYFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=48811 # 1xniA.492.42 read from T0547.t2k.many.frag # found chain 1xniA in template set Warning: unaligning (T0547)K493 (1xniA)L1528 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1xniA)D1531 because G (3-10) conformation "forbidden" or filtered. T0547 492 :S 1xniA 1527 :V T0547 494 :DK 1xniA 1529 :GK T0547 497 :LFLH 1xniA 1532 :ILLC Number of specific fragments extracted= 3 number of extra gaps= 2 total=48814 # 1o7jA.492.286 read from T0547.t2k.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)S492 (1o7jA)D287 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1o7jA)G292 because S (epsilon) conformation "forbidden" or filtered. T0547 493 :KDKP 1o7jA 288 :EELP T0547 498 :FLH 1o7jA 293 :LVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=48816 # 1o75A.492.122 read from T0547.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)P496 (1o75A)G127 because T (delta_L) conformation "forbidden" or filtered. T0547 492 :SKDK 1o75A 123 :EAVE T0547 497 :LFLH 1o75A 128 :AVAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=48818 # 2f8aA.492.153 read from T0547.t2k.many.frag # found chain 2f8aA in training set T0547 492 :SKDKPLFLH 2f8aA 142 :MTDPKLITW Number of specific fragments extracted= 1 number of extra gaps= 0 total=48819 # 2axwA.492.73 read from T0547.t2k.many.frag # found chain 2axwA in training set Warning: unaligning (T0547)P496 (2axwA)G78 because T (delta_L) conformation "forbidden" or filtered. T0547 492 :SKDK 2axwA 74 :VKGE T0547 497 :LFLH 2axwA 79 :GKGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=48821 # 1z6fA.492.312 read from T0547.t2k.many.frag # found chain 1z6fA in training set T0547 492 :SKDKPLFLH 1z6fA 313 :VLNSSELHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48822 # 1c4rA.492.117 read from T0547.t2k.many.frag # found chain 1c4rA in template set T0547 492 :SKDKPLFLH 1c4rA 198 :YPAGRQLTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=48823 # 1w9zA.492.240 read from T0547.t2k.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE in next template residue (1w9zA)S244 Warning: unaligning (T0547)K495 because of BadResidue code BAD_PEPTIDE at template residue (1w9zA)S244 Warning: unaligning (T0547)P496 (1w9zA)G245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1w9zA)S246 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :SK 1w9zA 241 :SA T0547 498 :FLH 1w9zA 247 :LPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=48825 # 1cv8.492.5 read from T0547.t2k.many.frag # found chain 1cv8 in training set T0547 492 :SKDKPLFLH 1cv8 6 :VNKLENFKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=48826 # 1qxmA.492.223 read from T0547.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)K493 (1qxmA)I211 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1qxmA)N213 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1qxmA)N216 because L (left) conformation "forbidden" or filtered. T0547 492 :S 1qxmA 210 :W T0547 494 :D 1qxmA 212 :Q T0547 496 :PL 1qxmA 214 :SN T0547 499 :LH 1qxmA 217 :YV Number of specific fragments extracted= 4 number of extra gaps= 3 total=48830 # 1ntyA.492.252 read from T0547.t2k.many.frag # found chain 1ntyA in training set T0547 492 :SKDKPLFLH 1ntyA 1477 :KLFTSELGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=48831 # 1i88A.492.256 read from T0547.t2k.many.frag # found chain 1i88A in training set Warning: unaligning (T0547)K493 (1i88A)L258 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1i88A)R259 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1i88A)A261 because G (3-10) conformation "forbidden" or filtered. T0547 492 :S 1i88A 257 :H T0547 495 :K 1i88A 260 :E T0547 497 :LFLH 1i88A 262 :GLTF Number of specific fragments extracted= 3 number of extra gaps= 2 total=48834 # 1kwgA.492.185 read from T0547.t2k.many.frag # found chain 1kwgA in training set T0547 492 :SKDKPLFLH 1kwgA 186 :YRSFAEVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48835 # 1iow.492.156 read from T0547.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0547)K493 (1iow)V158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1iow)A159 because S (epsilon) conformation "forbidden" or filtered. T0547 492 :S 1iow 157 :V T0547 495 :KPLFLH 1iow 160 :ENALQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=48837 # 1jb0D.492.93 read from T0547.t2k.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)K493 (1jb0D)H95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1jb0D)P96 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1jb0D)D98 because G (3-10) conformation "forbidden" or filtered. T0547 492 :S 1jb0D 94 :I T0547 495 :K 1jb0D 97 :K T0547 497 :LFLH 1jb0D 99 :GVFP Number of specific fragments extracted= 3 number of extra gaps= 2 total=48840 # 2b0aA.492.96 read from T0547.t2k.many.frag # found chain 2b0aA in training set Warning: unaligning (T0547)D494 (2b0aA)R99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (2b0aA)F103 because G (3-10) conformation "forbidden" or filtered. T0547 492 :SK 2b0aA 97 :WG T0547 495 :KPL 2b0aA 100 :DEY T0547 499 :LH 2b0aA 104 :EK Number of specific fragments extracted= 3 number of extra gaps= 2 total=48843 # 1gu2A.492.63 read from T0547.t2k.many.frag # found chain 1gu2A in training set Warning: unaligning (T0547)K495 (1gu2A)G67 because T (delta_L) conformation "forbidden" or filtered. T0547 492 :SKD 1gu2A 64 :IVT T0547 496 :PLFLH 1gu2A 68 :KEIPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=48845 # 1l8aA.493.430 read from T0547.t2k.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)F498 (1l8aA)L436 because L (left) conformation "forbidden" or filtered. T0547 493 :KDKPL 1l8aA 431 :ADIEK T0547 499 :LHD 1l8aA 437 :PYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=48847 # 1s1dA.493.76 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)P496 (1s1dA)D80 because E (beta_S) conformation "forbidden" or filtered. T0547 493 :KDK 1s1dA 77 :WDK T0547 497 :LFLHD 1s1dA 81 :HGVLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=48849 # 1s1dA.493.78 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)D494 (1s1dA)D80 because E (beta_S) conformation "forbidden" or filtered. T0547 493 :K 1s1dA 79 :K T0547 495 :KPLFLHD 1s1dA 81 :HGVLESH Number of specific fragments extracted= 2 number of extra gaps= 1 total=48851 # 1kkeA.493.132 read from T0547.t2k.many.frag # found chain 1kkeA in template set Warning: unaligning (T0547)K493 (1kkeA)L378 because P (beta_P) conformation "forbidden" or filtered. T0547 494 :DKPLFLHD 1kkeA 379 :LTGDTEPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=48852 # 1vns.493.81 read from T0547.t2k.many.frag # found chain 1vns in training set T0547 493 :KDKPLFLHD 1vns 82 :TENAAYRLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=48853 # 1xipA.493.317 read from T0547.t2k.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)P496 (1xipA)E320 because G (3-10) conformation "forbidden" or filtered. T0547 493 :KDK 1xipA 317 :QDS T0547 497 :LFLHD 1xipA 321 :RAVLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=48855 # 1a12A.493.310 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)F498 (1a12A)G324 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1a12A)G327 because L (left) conformation "forbidden" or filtered. T0547 493 :KDKPL 1a12A 319 :GRAEY T0547 499 :LH 1a12A 325 :RL Number of specific fragments extracted= 2 number of extra gaps= 2 total=48857 # 1gqeA.493.233 read from T0547.t2k.many.frag # found chain 1gqeA in template set T0547 493 :KDKPLFLHD 1gqeA 234 :INPADLRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=48858 # 1xniA.493.43 read from T0547.t2k.many.frag # found chain 1xniA in template set Warning: unaligning (T0547)P496 (1xniA)D1531 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1xniA)D1536 because E (beta_S) conformation "forbidden" or filtered. T0547 493 :KDK 1xniA 1528 :LGK T0547 497 :LFLH 1xniA 1532 :ILLC Number of specific fragments extracted= 2 number of extra gaps= 2 total=48860 # 1w9zA.493.241 read from T0547.t2k.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)K493 (1w9zA)A242 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE in next template residue (1w9zA)S244 Warning: unaligning (T0547)K495 because of BadResidue code BAD_PEPTIDE at template residue (1w9zA)S244 Warning: unaligning (T0547)P496 (1w9zA)G245 because L (left) conformation "forbidden" or filtered. T0547 497 :LFLHD 1w9zA 246 :SLPLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=48861 # 1smxA.493.42 read from T0547.t2k.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)K495 (1smxA)A74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1smxA)A80 because Y (epsilon') conformation "forbidden" or filtered. T0547 493 :KD 1smxA 72 :EI T0547 496 :PLFLH 1smxA 75 :REYFP Number of specific fragments extracted= 2 number of extra gaps= 2 total=48863 # 1cv8.493.6 read from T0547.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)D501 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)E16 T0547 493 :KDKPLFLH 1cv8 7 :NKLENFKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=48864 # 1ka8A.493.15 read from T0547.t2k.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)P496 (1ka8A)S19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1ka8A)G24 because P (beta_P) conformation "forbidden" or filtered. T0547 493 :KDK 1ka8A 16 :PQT T0547 497 :LFLH 1ka8A 20 :GMYM Number of specific fragments extracted= 2 number of extra gaps= 2 total=48866 # 1flmA.493.92 read from T0547.t2k.many.frag # found chain 1flmA in training set T0547 493 :KDKPLFLHD 1flmA 93 :TDGPEFEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=48867 # 1xd7A.493.56 read from T0547.t2k.many.frag # found chain 1xd7A in template set Warning: unaligning (T0547)L497 (1xd7A)G61 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)L499 (1xd7A)S63 because Y (epsilon') conformation "forbidden" or filtered. T0547 493 :KDKP 1xd7A 57 :AGVP T0547 498 :F 1xd7A 62 :A T0547 500 :HD 1xd7A 64 :LK Number of specific fragments extracted= 3 number of extra gaps= 2 total=48870 # 1kwgA.493.186 read from T0547.t2k.many.frag # found chain 1kwgA in training set T0547 493 :KDKPLFLHD 1kwgA 187 :RSFAEVELP Number of specific fragments extracted= 1 number of extra gaps= 0 total=48871 # 2axwA.493.74 read from T0547.t2k.many.frag # found chain 2axwA in training set Warning: unaligning (T0547)P496 (2axwA)G78 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L499 (2axwA)G81 because S (epsilon) conformation "forbidden" or filtered. T0547 493 :KDK 2axwA 75 :KGE T0547 497 :LF 2axwA 79 :GK T0547 500 :HD 2axwA 82 :VS Number of specific fragments extracted= 3 number of extra gaps= 2 total=48874 # 2f8aA.493.154 read from T0547.t2k.many.frag # found chain 2f8aA in training set T0547 493 :KDKPLFLHD 2f8aA 143 :TDPKLITWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=48875 # 1ntyA.493.253 read from T0547.t2k.many.frag # found chain 1ntyA in training set Warning: unaligning (T0547)D501 (1ntyA)T1486 because E (beta_S) conformation "forbidden" or filtered. T0547 493 :KDKPLFLH 1ntyA 1478 :LFTSELGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=48876 # 1w2fA.493.238 read from T0547.t2k.many.frag # found chain 1w2fA in training set Warning: unaligning (T0547)K495 (1w2fA)G426 because T (delta_L) conformation "forbidden" or filtered. T0547 493 :KD 1w2fA 424 :PD T0547 496 :PLFLHD 1w2fA 427 :QILDHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=48878 # 1z6fA.493.313 read from T0547.t2k.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)H500 (1z6fA)A321 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1z6fA)P322 because C (cis) conformation "forbidden" or filtered. T0547 493 :KDKPLFL 1z6fA 314 :LNSSELH Number of specific fragments extracted= 1 number of extra gaps= 1 total=48879 # 1zsoA.493.85 read from T0547.t2k.many.frag # found chain 1zsoA in template set Warning: unaligning (T0547)D494 (1zsoA)T79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1zsoA)N81 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1zsoA)C83 because L (left) conformation "forbidden" or filtered. T0547 493 :K 1zsoA 78 :N T0547 495 :K 1zsoA 80 :K T0547 497 :L 1zsoA 82 :S T0547 499 :LHD 1zsoA 84 :SYE Number of specific fragments extracted= 4 number of extra gaps= 3 total=48883 # 1s4cA.493.96 read from T0547.t2k.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)P496 (1s4cA)D100 because G (3-10) conformation "forbidden" or filtered. T0547 493 :KDK 1s4cA 97 :NEA T0547 497 :LFLHD 1s4cA 101 :DYQLC Number of specific fragments extracted= 2 number of extra gaps= 1 total=48885 # 1wxcA.493.121 read from T0547.t2k.many.frag # found chain 1wxcA in training set Warning: unaligning (T0547)P496 (1wxcA)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 493 :KDK 1wxcA 122 :AST T0547 497 :LFLHD 1wxcA 126 :NWPIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=48887 # 1qxmA.493.224 read from T0547.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)K493 (1qxmA)I211 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1qxmA)N213 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1qxmA)N216 because L (left) conformation "forbidden" or filtered. T0547 494 :D 1qxmA 212 :Q T0547 496 :PL 1qxmA 214 :SN T0547 499 :LHD 1qxmA 217 :YVE Number of specific fragments extracted= 3 number of extra gaps= 3 total=48890 # 1i88A.493.257 read from T0547.t2k.many.frag # found chain 1i88A in training set Warning: unaligning (T0547)D494 (1i88A)R259 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1i88A)A261 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1i88A)G262 because S (epsilon) conformation "forbidden" or filtered. T0547 493 :K 1i88A 258 :L T0547 495 :K 1i88A 260 :E T0547 498 :FLHD 1i88A 263 :LTFH Number of specific fragments extracted= 3 number of extra gaps= 2 total=48893 # 1o75A.493.123 read from T0547.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)D494 (1o75A)V125 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1o75A)G127 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1o75A)A128 because Y (epsilon') conformation "forbidden" or filtered. T0547 493 :K 1o75A 124 :A T0547 495 :K 1o75A 126 :E T0547 498 :FLHD 1o75A 129 :VALA Number of specific fragments extracted= 3 number of extra gaps= 2 total=48896 # 1iwlA.493.107 read from T0547.t2k.many.frag # found chain 1iwlA in training set Warning: unaligning (T0547)D494 (1iwlA)N109 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1iwlA)D111 because G (3-10) conformation "forbidden" or filtered. T0547 493 :K 1iwlA 108 :Q T0547 495 :K 1iwlA 110 :G T0547 497 :LFLHD 1iwlA 112 :DFVLT Number of specific fragments extracted= 3 number of extra gaps= 2 total=48899 # 1xipA.493.316 read from T0547.t2k.many.frag # found chain 1xipA in template set T0547 493 :KDKPLFLHD 1xipA 316 :SQDSERAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48900 # 1o7jA.493.287 read from T0547.t2k.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)L497 (1o7jA)G292 because S (epsilon) conformation "forbidden" or filtered. T0547 493 :KDKP 1o7jA 288 :EELP T0547 498 :FLHD 1o7jA 293 :LVSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=48902 # 1l8aA.494.431 read from T0547.t2k.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)F498 (1l8aA)L436 because L (left) conformation "forbidden" or filtered. T0547 494 :DKPL 1l8aA 432 :DIEK T0547 499 :LHDV 1l8aA 437 :PYIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=48904 # 1vns.494.82 read from T0547.t2k.many.frag # found chain 1vns in training set T0547 494 :DKPLFLHDV 1vns 83 :ENAAYRLPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=48905 # 1xipA.494.318 read from T0547.t2k.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)P496 (1xipA)E320 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1xipA)P325 because P (beta_P) conformation "forbidden" or filtered. T0547 494 :DK 1xipA 318 :DS T0547 497 :LFLH 1xipA 321 :RAVL T0547 502 :V 1xipA 326 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=48908 # 1kkeA.494.133 read from T0547.t2k.many.frag # found chain 1kkeA in template set T0547 494 :DKPLFLHDV 1kkeA 379 :LTGDTEPAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=48909 # 1w9zA.494.242 read from T0547.t2k.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE in next template residue (1w9zA)S244 Warning: unaligning (T0547)K495 because of BadResidue code BAD_PEPTIDE at template residue (1w9zA)S244 Warning: unaligning (T0547)P496 (1w9zA)G245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1w9zA)S246 because Y (epsilon') conformation "forbidden" or filtered. T0547 498 :FLHDV 1w9zA 247 :LPLTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=48910 # 1a12A.494.311 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)F498 (1a12A)G324 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1a12A)G327 because L (left) conformation "forbidden" or filtered. T0547 494 :DKPL 1a12A 320 :RAEY T0547 499 :LH 1a12A 325 :RL T0547 502 :V 1a12A 328 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=48913 # 1s1dA.494.77 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)P496 (1s1dA)D80 because E (beta_S) conformation "forbidden" or filtered. T0547 494 :DK 1s1dA 78 :DK T0547 497 :LFLHDV 1s1dA 81 :HGVLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=48915 # 1cv8.494.7 read from T0547.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)D494 (1cv8)K8 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)E16 Warning: unaligning (T0547)V502 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)E16 T0547 495 :KPLFLH 1cv8 9 :LENFKI Number of specific fragments extracted= 1 number of extra gaps= 2 total=48916 # 1smxA.494.43 read from T0547.t2k.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)K495 (1smxA)A74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1smxA)A80 because Y (epsilon') conformation "forbidden" or filtered. T0547 494 :D 1smxA 73 :I T0547 496 :PLFLH 1smxA 75 :REYFP T0547 502 :V 1smxA 81 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=48919 # 1s1dA.494.79 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)D494 (1s1dA)D80 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :KPLFLHDV 1s1dA 81 :HGVLESHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=48920 # 1ntyA.494.254 read from T0547.t2k.many.frag # found chain 1ntyA in training set Warning: unaligning (T0547)D494 (1ntyA)F1479 because P (beta_P) conformation "forbidden" or filtered. T0547 495 :KPLFLHDV 1ntyA 1480 :TSELGVTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=48921 # 1kwgA.494.187 read from T0547.t2k.many.frag # found chain 1kwgA in training set T0547 494 :DKPLFLHDV 1kwgA 188 :SFAEVELPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=48922 # 1xniA.494.44 read from T0547.t2k.many.frag # found chain 1xniA in template set Warning: unaligning (T0547)P496 (1xniA)D1531 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1xniA)D1536 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V502 (1xniA)P1537 because C (cis) conformation "forbidden" or filtered. T0547 494 :DK 1xniA 1529 :GK T0547 497 :LFLH 1xniA 1532 :ILLC Number of specific fragments extracted= 2 number of extra gaps= 2 total=48924 # 1zsoA.494.86 read from T0547.t2k.many.frag # found chain 1zsoA in template set Warning: unaligning (T0547)D494 (1zsoA)T79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1zsoA)K80 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1zsoA)N81 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1zsoA)C83 because L (left) conformation "forbidden" or filtered. T0547 497 :L 1zsoA 82 :S T0547 499 :LHDV 1zsoA 84 :SYEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=48926 # 1wxcA.494.122 read from T0547.t2k.many.frag # found chain 1wxcA in training set Warning: unaligning (T0547)P496 (1wxcA)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 494 :DK 1wxcA 123 :ST T0547 497 :LFLHDV 1wxcA 126 :NWPINV Number of specific fragments extracted= 2 number of extra gaps= 1 total=48928 # 2axwA.494.75 read from T0547.t2k.many.frag # found chain 2axwA in training set Warning: unaligning (T0547)P496 (2axwA)G78 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (2axwA)S83 because E (beta_S) conformation "forbidden" or filtered. T0547 494 :DK 2axwA 76 :GE T0547 497 :LFLH 2axwA 79 :GKGV T0547 502 :V 2axwA 84 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=48931 # 1s4cA.494.97 read from T0547.t2k.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)P496 (1s4cA)D100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1s4cA)D101 because L (left) conformation "forbidden" or filtered. T0547 494 :DK 1s4cA 98 :EA T0547 498 :FLHDV 1s4cA 102 :YQLCA Number of specific fragments extracted= 2 number of extra gaps= 1 total=48933 # 2f8aA.494.155 read from T0547.t2k.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)V502 (2f8aA)P152 because C (cis) conformation "forbidden" or filtered. T0547 494 :DKPLFLHD 2f8aA 144 :DPKLITWS Number of specific fragments extracted= 1 number of extra gaps= 1 total=48934 # 1xipA.494.317 read from T0547.t2k.many.frag # found chain 1xipA in template set T0547 494 :DKPLFLHDV 1xipA 317 :QDSERAVLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=48935 # 1ka8A.494.16 read from T0547.t2k.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)P496 (1ka8A)S19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V502 (1ka8A)N25 because Y (epsilon') conformation "forbidden" or filtered. T0547 494 :DK 1ka8A 17 :QT T0547 497 :LFLHD 1ka8A 20 :GMYMG Number of specific fragments extracted= 2 number of extra gaps= 2 total=48937 # 1z6fA.494.314 read from T0547.t2k.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)D501 (1z6fA)P322 because C (cis) conformation "forbidden" or filtered. T0547 494 :DKPLFLH 1z6fA 315 :NSSELHA T0547 502 :V 1z6fA 323 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=48939 # 1gqeA.494.234 read from T0547.t2k.many.frag # found chain 1gqeA in template set Warning: unaligning (T0547)D494 (1gqeA)N235 because P (beta_P) conformation "forbidden" or filtered. T0547 495 :KPLFLHDV 1gqeA 236 :PADLRIDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=48940 # 1w96A.494.457 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 494 :DKPLFLHDV 1w96A 470 :PSGGTLHEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=48941 # 1ten.494.52 read from T0547.t2k.many.frag # found chain 1ten in training set Warning: unaligning (T0547)P496 (1ten)N856 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1ten)Q857 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1ten)G861 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V502 (1ten)N862 because L (left) conformation "forbidden" or filtered. T0547 494 :DK 1ten 854 :DE T0547 498 :FLH 1ten 858 :YSI Number of specific fragments extracted= 2 number of extra gaps= 2 total=48943 # 1flmA.494.93 read from T0547.t2k.many.frag # found chain 1flmA in training set T0547 494 :DKPLFLHDV 1flmA 94 :DGPEFEAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=48944 # 1x38A.494.573 read from T0547.t2k.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)D494 (1x38A)S574 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L499 (1x38A)P579 because C (cis) conformation "forbidden" or filtered. T0547 495 :KPLF 1x38A 575 :VDQL T0547 500 :HDV 1x38A 580 :MNV Number of specific fragments extracted= 2 number of extra gaps= 2 total=48946 # 1w2fA.494.239 read from T0547.t2k.many.frag # found chain 1w2fA in training set Warning: unaligning (T0547)K495 (1w2fA)G426 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1w2fA)H431 because L (left) conformation "forbidden" or filtered. T0547 494 :D 1w2fA 425 :D T0547 496 :PLFL 1w2fA 427 :QILD T0547 501 :DV 1w2fA 432 :RR Number of specific fragments extracted= 3 number of extra gaps= 2 total=48949 # 1cby.494.150 read from T0547.t2k.many.frag # found chain 1cby in template set Warning: unaligning (T0547)D501 (1cby)H158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V502 (1cby)S159 because L (left) conformation "forbidden" or filtered. T0547 494 :DKPLFLH 1cby 151 :DEAWIFW Number of specific fragments extracted= 1 number of extra gaps= 1 total=48950 # 1iwlA.494.108 read from T0547.t2k.many.frag # found chain 1iwlA in training set Warning: unaligning (T0547)K495 (1iwlA)G110 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1iwlA)D111 because G (3-10) conformation "forbidden" or filtered. T0547 494 :D 1iwlA 109 :N T0547 497 :LFLHDV 1iwlA 112 :DFVLTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=48952 # 1i88A.494.258 read from T0547.t2k.many.frag # found chain 1i88A in training set Warning: unaligning (T0547)D494 (1i88A)R259 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1i88A)A261 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1i88A)G262 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1i88A)H266 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :K 1i88A 260 :E T0547 498 :FLH 1i88A 263 :LTF T0547 502 :V 1i88A 267 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=48955 # 1l8aA.495.432 read from T0547.t2k.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)F498 (1l8aA)L436 because L (left) conformation "forbidden" or filtered. T0547 495 :KPL 1l8aA 433 :IEK T0547 499 :LHDVD 1l8aA 437 :PYITF Number of specific fragments extracted= 2 number of extra gaps= 1 total=48957 # 1vns.495.83 read from T0547.t2k.many.frag # found chain 1vns in training set T0547 495 :KPLFLHDVD 1vns 84 :NAAYRLPSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=48958 # 1w9zA.495.243 read from T0547.t2k.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)K495 because of BadResidue code BAD_PEPTIDE at template residue (1w9zA)S244 Warning: unaligning (T0547)P496 (1w9zA)G245 because L (left) conformation "forbidden" or filtered. T0547 497 :LFLHDVD 1w9zA 246 :SLPLTTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=48959 # 1s1dA.495.80 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)K495 (1s1dA)H81 because E (beta_S) conformation "forbidden" or filtered. T0547 496 :PLFLHDVD 1s1dA 82 :GVLESHLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=48960 # 1a12A.495.312 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)L497 (1a12A)Y323 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1a12A)G327 because L (left) conformation "forbidden" or filtered. T0547 495 :KP 1a12A 321 :AE T0547 498 :FLH 1a12A 324 :GRL T0547 502 :VD 1a12A 328 :LG Number of specific fragments extracted= 3 number of extra gaps= 2 total=48963 # 1xipA.495.319 read from T0547.t2k.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)P496 (1xipA)E320 because G (3-10) conformation "forbidden" or filtered. T0547 495 :K 1xipA 319 :S T0547 497 :LFLHDVD 1xipA 321 :RAVLPIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=48965 # 1cv8.495.8 read from T0547.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)D501 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)E16 Warning: unaligning (T0547)V502 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)E16 T0547 495 :KPLFLH 1cv8 9 :LENFKI T0547 503 :D 1cv8 17 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=48967 # 1kkeA.495.134 read from T0547.t2k.many.frag # found chain 1kkeA in template set T0547 495 :KPLFLHDVD 1kkeA 380 :TGDTEPAFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=48968 # 1kwgA.495.188 read from T0547.t2k.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)D503 (1kwgA)L197 because L (left) conformation "forbidden" or filtered. T0547 495 :KPLFLHDV 1kwgA 189 :FAEVELPH Number of specific fragments extracted= 1 number of extra gaps= 1 total=48969 # 1ntyA.495.255 read from T0547.t2k.many.frag # found chain 1ntyA in training set Warning: unaligning (T0547)D503 (1ntyA)H1488 because P (beta_P) conformation "forbidden" or filtered. T0547 495 :KPLFLHDV 1ntyA 1480 :TSELGVTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=48970 # 1smxA.495.44 read from T0547.t2k.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)D501 (1smxA)A80 because Y (epsilon') conformation "forbidden" or filtered. T0547 495 :KPLFLH 1smxA 74 :AREYFP T0547 502 :VD 1smxA 81 :NY Number of specific fragments extracted= 2 number of extra gaps= 1 total=48972 # 1zsoA.495.87 read from T0547.t2k.many.frag # found chain 1zsoA in template set Warning: unaligning (T0547)P496 (1zsoA)N81 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1zsoA)C83 because L (left) conformation "forbidden" or filtered. T0547 495 :K 1zsoA 80 :K T0547 497 :L 1zsoA 82 :S T0547 499 :LHDVD 1zsoA 84 :SYEEV Number of specific fragments extracted= 3 number of extra gaps= 2 total=48975 # 1wxcA.495.123 read from T0547.t2k.many.frag # found chain 1wxcA in training set Warning: unaligning (T0547)P496 (1wxcA)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 495 :K 1wxcA 124 :T T0547 497 :LFLHDVD 1wxcA 126 :NWPINVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=48977 # 1xniA.495.45 read from T0547.t2k.many.frag # found chain 1xniA in template set Warning: unaligning (T0547)P496 (1xniA)D1531 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1xniA)D1536 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V502 (1xniA)P1537 because C (cis) conformation "forbidden" or filtered. T0547 495 :K 1xniA 1530 :K T0547 497 :LFLH 1xniA 1532 :ILLC T0547 503 :D 1xniA 1538 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=48980 # 1s4cA.495.98 read from T0547.t2k.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)P496 (1s4cA)D100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1s4cA)D101 because L (left) conformation "forbidden" or filtered. T0547 495 :K 1s4cA 99 :A T0547 498 :FLHDVD 1s4cA 102 :YQLCAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=48982 # 1w96A.495.458 read from T0547.t2k.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)L497 (1w96A)G473 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1w96A)E477 because P (beta_P) conformation "forbidden" or filtered. T0547 495 :KP 1w96A 471 :SG T0547 498 :FLH 1w96A 474 :TLH T0547 502 :VD 1w96A 478 :LN Number of specific fragments extracted= 3 number of extra gaps= 2 total=48985 # 1xipA.495.318 read from T0547.t2k.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)D501 (1xipA)L324 because P (beta_P) conformation "forbidden" or filtered. T0547 495 :KPLFLH 1xipA 318 :DSERAV T0547 502 :VD 1xipA 325 :PI Number of specific fragments extracted= 2 number of extra gaps= 1 total=48987 # 2f8aA.495.156 read from T0547.t2k.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)V502 (2f8aA)P152 because C (cis) conformation "forbidden" or filtered. T0547 495 :KPLFLHD 2f8aA 145 :PKLITWS T0547 503 :D 2f8aA 153 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=48989 # 1ten.495.53 read from T0547.t2k.many.frag # found chain 1ten in training set Warning: unaligning (T0547)P496 (1ten)N856 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1ten)Q857 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1ten)G861 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V502 (1ten)N862 because L (left) conformation "forbidden" or filtered. T0547 495 :K 1ten 855 :E T0547 498 :FLH 1ten 858 :YSI T0547 503 :D 1ten 863 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=48992 # 1x38A.495.574 read from T0547.t2k.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)L499 (1x38A)P579 because C (cis) conformation "forbidden" or filtered. T0547 495 :KPLF 1x38A 575 :VDQL T0547 500 :HDVD 1x38A 580 :MNVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=48994 # 1z6fA.495.315 read from T0547.t2k.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)D501 (1z6fA)P322 because C (cis) conformation "forbidden" or filtered. T0547 495 :KPLFLH 1z6fA 316 :SSELHA T0547 502 :VD 1z6fA 323 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=48996 # 1zt3A.495.26 read from T0547.t2k.many.frag # found chain 1zt3A in training set Warning: unaligning (T0547)P496 (1zt3A)S199 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1zt3A)F201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1zt3A)P204 because P (beta_P) conformation "forbidden" or filtered. T0547 495 :K 1zt3A 198 :I T0547 497 :L 1zt3A 200 :K T0547 499 :LH 1zt3A 202 :YL T0547 502 :VD 1zt3A 205 :NC Number of specific fragments extracted= 4 number of extra gaps= 3 total=49000 # 1jb0D.495.96 read from T0547.t2k.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)P496 (1jb0D)D98 because G (3-10) conformation "forbidden" or filtered. T0547 495 :K 1jb0D 97 :K T0547 497 :LFLHDVD 1jb0D 99 :GVFPEKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=49002 # 1cby.495.151 read from T0547.t2k.many.frag # found chain 1cby in template set Warning: unaligning (T0547)D501 (1cby)H158 because Y (epsilon') conformation "forbidden" or filtered. T0547 495 :KPLFLH 1cby 152 :EAWIFW T0547 502 :VD 1cby 159 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=49004 1e44B expands to /projects/compbio/data/pdb/1e44.pdb.gz 1e44B:# 1e44B.495.77 read from T0547.t2k.many.frag # adding 1e44B to template set # found chain 1e44B in template set Warning: unaligning (T0547)L497 (1e44B)G80 because T (delta_L) conformation "forbidden" or filtered. T0547 495 :KP 1e44B 78 :KT T0547 498 :FLHDVD 1e44B 81 :NQLKGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=49006 1cpo expands to /projects/compbio/data/pdb/1cpo.pdb.gz 1cpo:Warning: there is no chain 1cpo will retry with 1cpoA Bad short name: OE for alphabet: pdb_atoms # 1cpo.495.12 read from T0547.t2k.many.frag # adding 1cpo to template set # found chain 1cpo in template set Warning: unaligning (T0547)P496 (1cpo)N13 because D (zeta) conformation "forbidden" or filtered. T0547 495 :K 1cpo 12 :N T0547 497 :LFLHDVD 1cpo 14 :TLPYVAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=49008 # 1w2fA.495.240 read from T0547.t2k.many.frag # found chain 1w2fA in training set Warning: unaligning (T0547)H500 (1w2fA)H431 because L (left) conformation "forbidden" or filtered. T0547 495 :KPLFL 1w2fA 426 :GQILD T0547 501 :DVD 1w2fA 432 :RRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=49010 # 2fimA.495.165 read from T0547.t2k.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)K495 (2fimA)N379 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2fimA)E380 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDVD 2fimA 381 :RVPIRPR Number of specific fragments extracted= 1 number of extra gaps= 1 total=49011 1fp3A expands to /projects/compbio/data/pdb/1fp3.pdb.gz 1fp3A:# 1fp3A.495.161 read from T0547.t2k.many.frag # adding 1fp3A to template set # found chain 1fp3A in template set Warning: unaligning (T0547)L499 (1fp3A)G166 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1fp3A)R167 because L (left) conformation "forbidden" or filtered. T0547 495 :KPLF 1fp3A 162 :PSGL T0547 501 :DVD 1fp3A 168 :PQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=49013 # 1flmA.495.94 read from T0547.t2k.many.frag # found chain 1flmA in training set T0547 495 :KPLFLHDVD 1flmA 95 :GPEFEAIAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=49014 # 1l8aA.496.433 read from T0547.t2k.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)F498 (1l8aA)L436 because L (left) conformation "forbidden" or filtered. T0547 496 :PL 1l8aA 434 :EK T0547 499 :LHDVDV 1l8aA 437 :PYITFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=49016 # 1s1dA.496.81 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)D503 (1s1dA)A89 because E (beta_S) conformation "forbidden" or filtered. T0547 496 :PLFLHDV 1s1dA 82 :GVLESHL T0547 504 :V 1s1dA 90 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=49018 # 1w9zA.496.244 read from T0547.t2k.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)P496 (1w9zA)G245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1w9zA)S246 because Y (epsilon') conformation "forbidden" or filtered. T0547 498 :FLHDVDV 1w9zA 247 :LPLTTIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=49019 # 1vns.496.84 read from T0547.t2k.many.frag # found chain 1vns in training set Warning: unaligning (T0547)V504 (1vns)N93 because L (left) conformation "forbidden" or filtered. T0547 496 :PLFLHDVD 1vns 85 :AAYRLPSP Number of specific fragments extracted= 1 number of extra gaps= 1 total=49020 # 1cv8.496.9 read from T0547.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)D501 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)E16 Warning: unaligning (T0547)V502 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)E16 T0547 496 :PLFLH 1cv8 10 :ENFKI T0547 503 :DV 1cv8 17 :TQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=49022 # 1kwgA.496.189 read from T0547.t2k.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)D503 (1kwgA)L197 because L (left) conformation "forbidden" or filtered. T0547 496 :PLFLHDV 1kwgA 190 :AEVELPH T0547 504 :V 1kwgA 198 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=49024 # 1xipA.496.320 read from T0547.t2k.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)P496 (1xipA)E320 because G (3-10) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1xipA 321 :RAVLPISE Number of specific fragments extracted= 1 number of extra gaps= 1 total=49025 # 1a12A.496.313 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)L497 (1a12A)Y323 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1a12A)G324 because T (delta_L) conformation "forbidden" or filtered. T0547 496 :P 1a12A 322 :E T0547 499 :LHDVDV 1a12A 325 :RLGLGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=49027 # 1ntyA.496.256 read from T0547.t2k.many.frag # found chain 1ntyA in training set Warning: unaligning (T0547)D503 (1ntyA)H1488 because P (beta_P) conformation "forbidden" or filtered. T0547 496 :PLFLHDV 1ntyA 1481 :SELGVTE T0547 504 :V 1ntyA 1489 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=49029 # 1smxA.496.45 read from T0547.t2k.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)D501 (1smxA)A80 because Y (epsilon') conformation "forbidden" or filtered. T0547 496 :PLFLH 1smxA 75 :REYFP T0547 502 :VDV 1smxA 81 :NYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=49031 # 1zsoA.496.88 read from T0547.t2k.many.frag # found chain 1zsoA in template set Warning: unaligning (T0547)P496 (1zsoA)N81 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1zsoA)C83 because L (left) conformation "forbidden" or filtered. T0547 497 :L 1zsoA 82 :S T0547 499 :LHDVDV 1zsoA 84 :SYEEVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=49033 # 1xniA.496.46 read from T0547.t2k.many.frag # found chain 1xniA in template set Warning: unaligning (T0547)P496 (1xniA)D1531 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V502 (1xniA)P1537 because C (cis) conformation "forbidden" or filtered. T0547 497 :LFLHD 1xniA 1532 :ILLCD T0547 503 :DV 1xniA 1538 :IP Number of specific fragments extracted= 2 number of extra gaps= 2 total=49035 # 1wxcA.496.124 read from T0547.t2k.many.frag # found chain 1wxcA in training set Warning: unaligning (T0547)P496 (1wxcA)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1wxcA 126 :NWPINVRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=49036 # 1kkeA.496.135 read from T0547.t2k.many.frag # found chain 1kkeA in template set T0547 496 :PLFLHDVDV 1kkeA 381 :GDTEPAFHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=49037 # 1ten.496.54 read from T0547.t2k.many.frag # found chain 1ten in training set Warning: unaligning (T0547)P496 (1ten)N856 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1ten)Q857 because Y (epsilon') conformation "forbidden" or filtered. T0547 498 :FLHDVDV 1ten 858 :YSIGNLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=49038 # 1zt3A.496.27 read from T0547.t2k.many.frag # found chain 1zt3A in training set Warning: unaligning (T0547)P496 (1zt3A)S199 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1zt3A)F201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1zt3A)C206 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :L 1zt3A 200 :K T0547 499 :LHDV 1zt3A 202 :YLPN T0547 504 :V 1zt3A 207 :N Number of specific fragments extracted= 3 number of extra gaps= 3 total=49041 # 1w96A.496.459 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 496 :PLFLHDVDV 1w96A 472 :GGTLHELNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=49042 # 1x38A.496.575 read from T0547.t2k.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)L499 (1x38A)P579 because C (cis) conformation "forbidden" or filtered. T0547 496 :PLF 1x38A 576 :DQL T0547 500 :HDVDV 1x38A 580 :MNVGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=49044 # 1s4cA.496.99 read from T0547.t2k.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)P496 (1s4cA)D100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1s4cA)D101 because L (left) conformation "forbidden" or filtered. T0547 498 :FLHDVDV 1s4cA 102 :YQLCADI Number of specific fragments extracted= 1 number of extra gaps= 1 total=49045 # 2f8aA.496.157 read from T0547.t2k.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)V502 (2f8aA)P152 because C (cis) conformation "forbidden" or filtered. T0547 496 :PLFLHD 2f8aA 146 :KLITWS T0547 503 :DV 2f8aA 153 :VC Number of specific fragments extracted= 2 number of extra gaps= 1 total=49047 # 1xipA.496.319 read from T0547.t2k.many.frag # found chain 1xipA in template set T0547 496 :PLFLHDVDV 1xipA 319 :SERAVLPIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=49048 # 1cpo.496.13 read from T0547.t2k.many.frag # found chain 1cpo in template set Warning: unaligning (T0547)P496 (1cpo)N13 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1cpo)V18 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLH 1cpo 14 :TLPY T0547 502 :VDV 1cpo 19 :APG Number of specific fragments extracted= 2 number of extra gaps= 2 total=49050 # 1fp3A.496.162 read from T0547.t2k.many.frag # found chain 1fp3A in template set Warning: unaligning (T0547)D503 (1fp3A)L170 because P (beta_P) conformation "forbidden" or filtered. T0547 496 :PLFLHDV 1fp3A 163 :SGLGRPQ T0547 504 :V 1fp3A 171 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=49052 # 1cby.496.152 read from T0547.t2k.many.frag # found chain 1cby in template set Warning: unaligning (T0547)D501 (1cby)H158 because Y (epsilon') conformation "forbidden" or filtered. T0547 496 :PLFLH 1cby 153 :AWIFW T0547 502 :VDV 1cby 159 :SLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=49054 # 1jb0D.496.97 read from T0547.t2k.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)P496 (1jb0D)D98 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1jb0D)G99 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1jb0D)V105 because P (beta_P) conformation "forbidden" or filtered. T0547 498 :FLHDV 1jb0D 100 :VFPEK T0547 504 :V 1jb0D 106 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=49056 # 1e44B.496.78 read from T0547.t2k.many.frag # found chain 1e44B in template set T0547 496 :PLFLHDVDV 1e44B 79 :TGNQLKGPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=49057 # 1sp3A.496.310 read from T0547.t2k.many.frag # found chain 1sp3A in template set T0547 496 :PLFLHDVDV 1sp3A 311 :KLTYPMGDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49058 # 2fimA.496.166 read from T0547.t2k.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)P496 (2fimA)E380 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (2fimA)R385 because D (zeta) conformation "forbidden" or filtered. T0547 497 :LFLH 2fimA 381 :RVPI T0547 502 :VDV 2fimA 386 :PRN Number of specific fragments extracted= 2 number of extra gaps= 2 total=49060 1tn6B expands to /projects/compbio/data/pdb/1tn6.pdb.gz 1tn6B:# 1tn6B.496.346 read from T0547.t2k.many.frag # adding 1tn6B to template set # found chain 1tn6B in template set Warning: unaligning (T0547)P496 (1tn6B)A847 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1tn6B)L851 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V504 (1tn6B)G855 because T (delta_L) conformation "forbidden" or filtered. T0547 497 :LFL 1tn6B 848 :GGL T0547 501 :DVD 1tn6B 852 :DKP Number of specific fragments extracted= 2 number of extra gaps= 3 total=49062 # 1flmA.496.95 read from T0547.t2k.many.frag # found chain 1flmA in training set T0547 496 :PLFLHDVDV 1flmA 96 :PEFEAIARF Number of specific fragments extracted= 1 number of extra gaps= 0 total=49063 # 1s1dA.497.82 read from T0547.t2k.many.frag # found chain 1s1dA in training set T0547 497 :LFLHDVDVE 1s1dA 83 :VLESHLAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=49064 # 1l8aA.497.434 read from T0547.t2k.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)F498 (1l8aA)L436 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1l8aA)E443 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :L 1l8aA 435 :K T0547 499 :LHDVDV 1l8aA 437 :PYITFP Number of specific fragments extracted= 2 number of extra gaps= 2 total=49066 # 1vns.497.85 read from T0547.t2k.many.frag # found chain 1vns in training set Warning: unaligning (T0547)H500 (1vns)L89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V504 (1vns)N93 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1vns)G94 because T (delta_L) conformation "forbidden" or filtered. T0547 497 :LFL 1vns 86 :AYR T0547 501 :DVD 1vns 90 :PSP Number of specific fragments extracted= 2 number of extra gaps= 2 total=49068 # 1w9zA.497.245 read from T0547.t2k.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)L497 (1w9zA)S246 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1w9zA)I252 because E (beta_S) conformation "forbidden" or filtered. T0547 498 :FLHDV 1w9zA 247 :LPLTT T0547 504 :VE 1w9zA 253 :PA Number of specific fragments extracted= 2 number of extra gaps= 2 total=49070 # 1cv8.497.10 read from T0547.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)D501 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)E16 Warning: unaligning (T0547)V502 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)E16 T0547 497 :LFLH 1cv8 11 :NFKI T0547 503 :DVE 1cv8 17 :TQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=49072 # 1ntyA.497.257 read from T0547.t2k.many.frag # found chain 1ntyA in training set T0547 497 :LFLHDVDVE 1ntyA 1482 :ELGVTEHVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=49073 # 1zsoA.497.89 read from T0547.t2k.many.frag # found chain 1zsoA in template set Warning: unaligning (T0547)F498 (1zsoA)C83 because L (left) conformation "forbidden" or filtered. T0547 497 :L 1zsoA 82 :S T0547 499 :LHDVDVE 1zsoA 84 :SYEEVNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=49075 # 1xipA.497.321 read from T0547.t2k.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)D501 (1xipA)P325 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLH 1xipA 321 :RAVL T0547 502 :VDVE 1xipA 326 :ISEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=49077 # 1a12A.497.314 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)L497 (1a12A)Y323 because T (delta_L) conformation "forbidden" or filtered. T0547 498 :FLHDVDVE 1a12A 324 :GRLGLGEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=49078 # 1kwgA.497.190 read from T0547.t2k.many.frag # found chain 1kwgA in training set T0547 497 :LFLHDVDVE 1kwgA 191 :EVELPHLTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49079 # 1ten.497.55 read from T0547.t2k.many.frag # found chain 1ten in training set Warning: unaligning (T0547)L497 (1ten)Q857 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V502 (1ten)N862 because L (left) conformation "forbidden" or filtered. T0547 498 :FLHD 1ten 858 :YSIG T0547 503 :DVE 1ten 863 :LKP Number of specific fragments extracted= 2 number of extra gaps= 2 total=49081 # 1smxA.497.46 read from T0547.t2k.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)D501 (1smxA)A80 because Y (epsilon') conformation "forbidden" or filtered. T0547 497 :LFLH 1smxA 76 :EYFP T0547 502 :VDVE 1smxA 81 :NYSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=49083 # 1xniA.497.47 read from T0547.t2k.many.frag # found chain 1xniA in template set Warning: unaligning (T0547)D501 (1xniA)D1536 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V502 (1xniA)P1537 because C (cis) conformation "forbidden" or filtered. T0547 497 :LFLH 1xniA 1532 :ILLC T0547 503 :DVE 1xniA 1538 :IPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=49085 # 1zt3A.497.28 read from T0547.t2k.many.frag # found chain 1zt3A in training set Warning: unaligning (T0547)F498 (1zt3A)F201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1zt3A)C206 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :L 1zt3A 200 :K T0547 499 :LHDV 1zt3A 202 :YLPN T0547 504 :VE 1zt3A 207 :NK Number of specific fragments extracted= 3 number of extra gaps= 2 total=49088 # 1sp3A.497.311 read from T0547.t2k.many.frag # found chain 1sp3A in template set Warning: unaligning (T0547)D501 (1sp3A)M316 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLH 1sp3A 312 :LTYP T0547 502 :VDVE 1sp3A 317 :GDIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=49090 # 1wxcA.497.125 read from T0547.t2k.many.frag # found chain 1wxcA in training set Warning: unaligning (T0547)D503 (1wxcA)R132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1wxcA)D134 because Y (epsilon') conformation "forbidden" or filtered. T0547 497 :LFLHDV 1wxcA 126 :NWPINV T0547 504 :V 1wxcA 133 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=49092 # 1ijqA.497.283 read from T0547.t2k.many.frag # found chain 1ijqA in training set T0547 497 :LFLHDVDVE 1ijqA 660 :CLPAPQINP Number of specific fragments extracted= 1 number of extra gaps= 0 total=49093 # 1u20A.497.155 read from T0547.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)D503 (1u20A)L162 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLHDV 1u20A 156 :RVPLYT T0547 504 :VE 1u20A 163 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=49095 # 1wleA.497.265 read from T0547.t2k.many.frag # found chain 1wleA in training set T0547 497 :LFLHDVDVE 1wleA 266 :IYNIDPSRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=49096 # 1fp3A.497.163 read from T0547.t2k.many.frag # found chain 1fp3A in template set Warning: unaligning (T0547)L499 (1fp3A)G166 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1fp3A)R167 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1fp3A)P168 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LF 1fp3A 164 :GL T0547 502 :VDVE 1fp3A 169 :QLPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=49098 # 1a8d.497.360 read from T0547.t2k.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)E505 (1a8d)P369 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1a8d 361 :ILRVGYNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=49099 2bpa2 expands to /projects/compbio/data/pdb/2bpa.pdb.gz 2bpa2:# 2bpa2.497.127 read from T0547.t2k.many.frag # adding 2bpa2 to template set # found chain 2bpa2 in template set T0547 497 :LFLHDVDVE 2bpa2 128 :TIDVLPRTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=49100 # 1cpo.497.14 read from T0547.t2k.many.frag # found chain 1cpo in template set Warning: unaligning (T0547)D501 (1cpo)V18 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLH 1cpo 14 :TLPY T0547 502 :VDVE 1cpo 19 :APGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=49102 # 1kv7A.497.454 read from T0547.t2k.many.frag # found chain 1kv7A in training set T0547 497 :LFLHDVDVE 1kv7A 483 :LVKFNHDAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=49103 1eerB expands to /projects/compbio/data/pdb/1eer.pdb.gz 1eerB:# 1eerB.497.180 read from T0547.t2k.many.frag # adding 1eerB to template set # found chain 1eerB in template set Warning: unaligning (T0547)H500 (1eerB)L183 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V502 (1eerB)N185 because L (left) conformation "forbidden" or filtered. T0547 497 :LFL 1eerB 180 :ECV T0547 501 :D 1eerB 184 :S T0547 503 :DVE 1eerB 186 :LRG Number of specific fragments extracted= 3 number of extra gaps= 2 total=49106 # 1kkeA.497.136 read from T0547.t2k.many.frag # found chain 1kkeA in template set Warning: unaligning (T0547)V504 (1kkeA)N389 because T (delta_L) conformation "forbidden" or filtered. T0547 497 :LFLHDVD 1kkeA 382 :DTEPAFH T0547 505 :E 1kkeA 390 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=49108 # 1yq2A.497.675 read from T0547.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)D501 (1yq2A)M679 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1yq2A)A681 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLH 1yq2A 675 :ALPA T0547 502 :V 1yq2A 680 :P T0547 504 :VE 1yq2A 682 :AP Number of specific fragments extracted= 3 number of extra gaps= 2 total=49111 # 1x38A.497.576 read from T0547.t2k.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)L499 (1x38A)P579 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1x38A)G583 because T (delta_L) conformation "forbidden" or filtered. T0547 497 :LF 1x38A 577 :QL T0547 500 :HDV 1x38A 580 :MNV T0547 504 :VE 1x38A 584 :DA Number of specific fragments extracted= 3 number of extra gaps= 2 total=49114 # 1p35A.497.178 read from T0547.t2k.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)D503 (1p35A)I186 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLHDV 1p35A 180 :VPFAHE T0547 504 :VE 1p35A 187 :ND Number of specific fragments extracted= 2 number of extra gaps= 1 total=49116 7ahlA expands to /projects/compbio/data/pdb/7ahl.pdb.gz 7ahlA:# 7ahlA.497.63 read from T0547.t2k.many.frag # adding 7ahlA to template set # found chain 7ahlA in template set T0547 497 :LFLHDVDVE 7ahlA 64 :QYRVYSEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49117 # 1l8aA.498.435 read from T0547.t2k.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)D501 (1l8aA)I439 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1l8aA)G444 because T (delta_L) conformation "forbidden" or filtered. T0547 498 :FLH 1l8aA 436 :LPY T0547 502 :VDVE 1l8aA 440 :TFPE Number of specific fragments extracted= 2 number of extra gaps= 2 total=49119 # 1s1dA.498.83 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)E505 (1s1dA)K91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1s1dA)G92 because T (delta_L) conformation "forbidden" or filtered. T0547 498 :FLHDVDV 1s1dA 84 :LESHLAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=49120 # 1zsoA.498.90 read from T0547.t2k.many.frag # found chain 1zsoA in template set Warning: unaligning (T0547)F498 (1zsoA)C83 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1zsoA)N90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1zsoA)N91 because T (delta_L) conformation "forbidden" or filtered. T0547 499 :LHDVDV 1zsoA 84 :SYEEVN Number of specific fragments extracted= 1 number of extra gaps= 2 total=49121 # 2bpa2.498.128 read from T0547.t2k.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0547)H500 (2bpa2)V131 because G (3-10) conformation "forbidden" or filtered. T0547 498 :FL 2bpa2 129 :ID T0547 501 :DVDVEK 2bpa2 132 :LPRTPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=49123 # 1cv8.498.11 read from T0547.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)D501 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)E16 Warning: unaligning (T0547)V502 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)E16 Warning: unaligning (T0547)D503 (1cv8)T17 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1cv8)G19 because P (beta_P) conformation "forbidden" or filtered. T0547 498 :FLH 1cv8 12 :FKI T0547 504 :V 1cv8 18 :Q T0547 506 :K 1cv8 20 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=49126 # 1a8d.498.361 read from T0547.t2k.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)D501 (1a8d)G365 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1a8d)G370 because T (delta_L) conformation "forbidden" or filtered. T0547 498 :FLH 1a8d 362 :LRV T0547 502 :VDVE 1a8d 366 :YNAP Number of specific fragments extracted= 2 number of extra gaps= 2 total=49128 # 1ntyA.498.258 read from T0547.t2k.many.frag # found chain 1ntyA in training set Warning: unaligning (T0547)K506 (1ntyA)G1491 because T (delta_L) conformation "forbidden" or filtered. T0547 498 :FLHDVDVE 1ntyA 1483 :LGVTEHVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=49129 # 1u20A.498.156 read from T0547.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)K506 (1u20A)R165 because T (delta_L) conformation "forbidden" or filtered. T0547 498 :FLHDVDVE 1u20A 157 :VPLYTLRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=49130 # 1w9zA.498.246 read from T0547.t2k.many.frag # found chain 1w9zA in template set T0547 498 :FLHDVDVEK 1w9zA 247 :LPLTTIPAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49131 # 1eerB.498.181 read from T0547.t2k.many.frag # found chain 1eerB in template set Warning: unaligning (T0547)D501 (1eerB)S184 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1eerB)R189 because L (left) conformation "forbidden" or filtered. T0547 498 :FLH 1eerB 181 :CVL T0547 502 :VDVE 1eerB 185 :NLRG Number of specific fragments extracted= 2 number of extra gaps= 2 total=49133 # 1sp3A.498.312 read from T0547.t2k.many.frag # found chain 1sp3A in template set T0547 498 :FLHDVDVEK 1sp3A 313 :TYPMGDIND Number of specific fragments extracted= 1 number of extra gaps= 0 total=49134 # 1vns.498.86 read from T0547.t2k.many.frag # found chain 1vns in training set T0547 498 :FLHDVDVEK 1vns 87 :YRLPSPNGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49135 # 1ijqA.498.284 read from T0547.t2k.many.frag # found chain 1ijqA in training set T0547 498 :FLHDVDVEK 1ijqA 661 :LPAPQINPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=49136 # 1ten.498.56 read from T0547.t2k.many.frag # found chain 1ten in training set Warning: unaligning (T0547)D501 (1ten)G861 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1ten)D866 because L (left) conformation "forbidden" or filtered. T0547 498 :FLH 1ten 858 :YSI T0547 502 :VDVE 1ten 862 :NLKP Number of specific fragments extracted= 2 number of extra gaps= 2 total=49138 # 1s3eA.498.327 read from T0547.t2k.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)K506 (1s3eA)N336 because P (beta_P) conformation "forbidden" or filtered. T0547 498 :FLHDVDVE 1s3eA 328 :LDDTKPEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=49139 # 1wleA.498.266 read from T0547.t2k.many.frag # found chain 1wleA in training set T0547 498 :FLHDVDVEK 1wleA 267 :YNIDPSRFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=49140 # 2brfA.498.19 read from T0547.t2k.many.frag # found chain 2brfA in training set Warning: unaligning (T0547)D503 (2brfA)P25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (2brfA)D27 because L (left) conformation "forbidden" or filtered. T0547 498 :FLHDV 2brfA 20 :PPIFL T0547 504 :V 2brfA 26 :S T0547 506 :K 2brfA 28 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=49143 # 1lm8V.498.82 read from T0547.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)E505 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1lm8V)G144 because L (left) conformation "forbidden" or filtered. T0547 498 :FLHDVDV 1lm8V 136 :FVPSLNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=49144 # 1zt3A.498.29 read from T0547.t2k.many.frag # found chain 1zt3A in training set T0547 498 :FLHDVDVEK 1zt3A 201 :FYLPNCNKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=49145 # 1smxA.498.47 read from T0547.t2k.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)D501 (1smxA)A80 because Y (epsilon') conformation "forbidden" or filtered. T0547 498 :FLH 1smxA 77 :YFP T0547 502 :VDVEK 1smxA 81 :NYSAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=49147 # 1xipA.498.322 read from T0547.t2k.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)D501 (1xipA)P325 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1xipA)S327 because P (beta_P) conformation "forbidden" or filtered. T0547 498 :FLH 1xipA 322 :AVL T0547 502 :V 1xipA 326 :I T0547 504 :VEK 1xipA 328 :EET Number of specific fragments extracted= 3 number of extra gaps= 2 total=49150 # 1xniA.498.48 read from T0547.t2k.many.frag # found chain 1xniA in template set Warning: unaligning (T0547)V502 (1xniA)P1537 because C (cis) conformation "forbidden" or filtered. T0547 498 :FLHD 1xniA 1533 :LLCD T0547 503 :DVEK 1xniA 1538 :IPLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=49152 # 1a12A.498.315 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)F498 (1a12A)G324 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1a12A)G327 because L (left) conformation "forbidden" or filtered. T0547 499 :LH 1a12A 325 :RL T0547 502 :VDVEK 1a12A 328 :LGEGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=49154 # 2biqA.498.124 read from T0547.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)D501 (2biqA)E221 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (2biqA)P223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (2biqA)G226 because T (delta_L) conformation "forbidden" or filtered. T0547 498 :FLH 2biqA 218 :VPY T0547 502 :V 2biqA 222 :P T0547 504 :VE 2biqA 224 :EV Number of specific fragments extracted= 3 number of extra gaps= 3 total=49157 # 1suuA.498.37 read from T0547.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0547)E505 (1suuA)D543 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1suuA)G544 because L (left) conformation "forbidden" or filtered. T0547 498 :FLHDVDV 1suuA 536 :LSSFDLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=49158 # 1f7lA.498.76 read from T0547.t2k.many.frag # found chain 1f7lA in training set T0547 498 :FLHDVDVEK 1f7lA 77 :IEIRKDQNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49159 # 1olzA.498.275 read from T0547.t2k.many.frag # found chain 1olzA in template set T0547 498 :FLHDVDVEK 1olzA 276 :FVLRSPGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=49160 # 1kwgA.498.191 read from T0547.t2k.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)D503 (1kwgA)L197 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1kwgA)A200 because S (epsilon) conformation "forbidden" or filtered. T0547 498 :FLHDV 1kwgA 192 :VELPH T0547 504 :VE 1kwgA 198 :TV Number of specific fragments extracted= 2 number of extra gaps= 2 total=49162 # 1wxcA.498.126 read from T0547.t2k.many.frag # found chain 1wxcA in training set Warning: unaligning (T0547)D503 (1wxcA)R132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1wxcA)D134 because Y (epsilon') conformation "forbidden" or filtered. T0547 498 :FLHDV 1wxcA 127 :WPINV T0547 504 :V 1wxcA 133 :V T0547 506 :K 1wxcA 135 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=49165 # 1tg7A.498.742 read from T0547.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)K506 (1tg7A)G791 because T (delta_L) conformation "forbidden" or filtered. T0547 498 :FLHDVDVE 1tg7A 783 :YTLPTLQS Number of specific fragments extracted= 1 number of extra gaps= 1 total=49166 # 2bpa2.499.129 read from T0547.t2k.many.frag # found chain 2bpa2 in template set T0547 499 :LHDVDVEKE 2bpa2 130 :DVLPRTPGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=49167 # 1zsoA.499.91 read from T0547.t2k.many.frag # found chain 1zsoA in template set Warning: unaligning (T0547)E505 (1zsoA)N90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1zsoA)N91 because T (delta_L) conformation "forbidden" or filtered. T0547 499 :LHDVDV 1zsoA 84 :SYEEVN T0547 507 :E 1zsoA 92 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=49169 # 1s1dA.499.84 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)E505 (1s1dA)K91 because L (left) conformation "forbidden" or filtered. T0547 499 :LHDVDV 1s1dA 85 :ESHLAE T0547 506 :KE 1s1dA 92 :GR Number of specific fragments extracted= 2 number of extra gaps= 1 total=49171 # 1l8aA.499.436 read from T0547.t2k.many.frag # found chain 1l8aA in template set T0547 499 :LHDVDVEKE 1l8aA 437 :PYITFPEGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=49172 # 1cv8.499.12 read from T0547.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)D501 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)E16 Warning: unaligning (T0547)V502 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)E16 Warning: unaligning (T0547)E505 (1cv8)G19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1cv8)N21 because Y (epsilon') conformation "forbidden" or filtered. T0547 499 :LH 1cv8 13 :KI T0547 503 :DV 1cv8 17 :TQ T0547 506 :K 1cv8 20 :N Number of specific fragments extracted= 3 number of extra gaps= 3 total=49175 # 2brfA.499.20 read from T0547.t2k.many.frag # found chain 2brfA in training set T0547 499 :LHDVDVEKE 2brfA 21 :PIFLPSDGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=49176 # 1a8d.499.362 read from T0547.t2k.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)K506 (1a8d)G370 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1a8d)I371 because E (beta_S) conformation "forbidden" or filtered. T0547 499 :LHDVDVE 1a8d 363 :RVGYNAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=49177 1m1lA expands to /projects/compbio/data/pdb/1m1l.pdb.gz 1m1lA:# 1m1lA.499.77 read from T0547.t2k.many.frag # adding 1m1lA to template set # found chain 1m1lA in template set Warning: unaligning (T0547)H500 (1m1lA)H105 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1m1lA)E106 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1m1lA)G112 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :L 1m1lA 104 :V T0547 502 :VDVEK 1m1lA 107 :FTGTD Number of specific fragments extracted= 2 number of extra gaps= 2 total=49179 1gycA expands to /projects/compbio/data/pdb/1gyc.pdb.gz 1gycA:Skipped atom 271, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 272, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 273, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 274, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 275, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 276, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 277, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 278, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 279, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 461, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 462, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 463, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 464, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 465, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 466, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 1782, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1783, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1784, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1785, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1786, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1787, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1788, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1789, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1790, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 2330, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2331, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2332, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2333, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2334, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2335, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2336, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2337, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2427, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2428, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2429, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2430, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2431, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2432, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2433, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2434, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2466, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2467, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2468, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2469, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2470, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2471, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2691, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2692, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2693, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2694, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2695, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2696, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2697, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2966, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2967, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2968, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2969, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2970, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2971, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2972, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2973, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3732, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3733, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3734, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3735, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3736, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3737, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3738, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3739, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3740, because occupancy 0.500 <= existing 0.500 in 1gycA # 1gycA.499.185 read from T0547.t2k.many.frag # adding 1gycA to template set # found chain 1gycA in template set Warning: unaligning (T0547)E505 (1gycA)H192 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :LHDVDV 1gycA 186 :AVINVQ T0547 506 :KE 1gycA 193 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=49181 # 1u20A.499.157 read from T0547.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)D503 (1u20A)L162 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :LHDV 1u20A 158 :PLYT T0547 504 :VEKE 1u20A 163 :RDRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=49183 # 1tg7A.499.743 read from T0547.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)D503 (1tg7A)L788 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1tg7A)G791 because T (delta_L) conformation "forbidden" or filtered. T0547 499 :LHDV 1tg7A 784 :TLPT T0547 504 :VE 1tg7A 789 :QS T0547 507 :E 1tg7A 792 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=49186 # 1ntyA.499.259 read from T0547.t2k.many.frag # found chain 1ntyA in training set Warning: unaligning (T0547)D503 (1ntyA)H1488 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1ntyA)G1491 because T (delta_L) conformation "forbidden" or filtered. T0547 499 :LHDV 1ntyA 1484 :GVTE T0547 504 :VE 1ntyA 1489 :VE T0547 507 :E 1ntyA 1492 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=49189 # 1w9zA.499.247 read from T0547.t2k.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)D503 (1w9zA)I252 because E (beta_S) conformation "forbidden" or filtered. T0547 499 :LHDV 1w9zA 248 :PLTT T0547 504 :VEKE 1w9zA 253 :PAVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=49191 # 1s3eA.499.328 read from T0547.t2k.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)D501 (1s3eA)T331 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1s3eA)G335 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1s3eA)Y337 because L (left) conformation "forbidden" or filtered. T0547 499 :LH 1s3eA 329 :DD T0547 502 :VDV 1s3eA 332 :KPE T0547 506 :K 1s3eA 336 :N Number of specific fragments extracted= 3 number of extra gaps= 3 total=49194 # 1lm8V.499.83 read from T0547.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)E505 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. T0547 499 :LHDVDV 1lm8V 137 :VPSLNV T0547 506 :KE 1lm8V 144 :GQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=49196 # 1eerB.499.182 read from T0547.t2k.many.frag # found chain 1eerB in template set Warning: unaligning (T0547)D501 (1eerB)S184 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1eerB)R189 because L (left) conformation "forbidden" or filtered. T0547 499 :LH 1eerB 182 :VL T0547 502 :VDVE 1eerB 185 :NLRG T0547 507 :E 1eerB 190 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=49199 # 1suuA.499.38 read from T0547.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0547)D501 (1suuA)F539 because E (beta_S) conformation "forbidden" or filtered. T0547 499 :LH 1suuA 537 :SS T0547 502 :VDVEKE 1suuA 540 :DLNDGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=49201 # 1f7lA.499.77 read from T0547.t2k.many.frag # found chain 1f7lA in training set T0547 499 :LHDVDVEKE 1f7lA 78 :EIRKDQNGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=49202 1kjlA expands to /projects/compbio/data/pdb/1kjl.pdb.gz 1kjlA:Skipped atom 160, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 162, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 164, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 166, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 168, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 170, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 172, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 174, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 981, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 983, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 985, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 987, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 989, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 991, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1071, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1073, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1075, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1077, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1079, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1081, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1113, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1115, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1117, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1119, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1121, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1123, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1125, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1127, because occupancy 0.500 <= existing 0.500 in 1kjlA # 1kjlA.499.83 read from T0547.t2k.many.frag # adding 1kjlA to template set # found chain 1kjlA in template set Warning: unaligning (T0547)E507 (1kjlA)K196 because E (beta_S) conformation "forbidden" or filtered. T0547 499 :LHDVDVEK 1kjlA 188 :SVFPFESG Number of specific fragments extracted= 1 number of extra gaps= 1 total=49203 # 1sp3A.499.313 read from T0547.t2k.many.frag # found chain 1sp3A in template set Warning: unaligning (T0547)D503 (1sp3A)D318 because Y (epsilon') conformation "forbidden" or filtered. T0547 499 :LHDV 1sp3A 314 :YPMG T0547 504 :VEKE 1sp3A 319 :INDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=49205 # 1a12A.499.316 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)D501 (1a12A)G327 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1a12A)G331 because T (delta_L) conformation "forbidden" or filtered. T0547 499 :LH 1a12A 325 :RL T0547 502 :VDV 1a12A 328 :LGE T0547 506 :KE 1a12A 332 :AE Number of specific fragments extracted= 3 number of extra gaps= 2 total=49208 # 1wleA.499.267 read from T0547.t2k.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)H500 (1wleA)I269 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :L 1wleA 268 :N T0547 501 :DVDVEKE 1wleA 270 :DPSRFED Number of specific fragments extracted= 2 number of extra gaps= 1 total=49210 # 1ten.499.57 read from T0547.t2k.many.frag # found chain 1ten in training set Warning: unaligning (T0547)V502 (1ten)N862 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1ten)D866 because L (left) conformation "forbidden" or filtered. T0547 499 :LHD 1ten 859 :SIG T0547 503 :DVE 1ten 863 :LKP T0547 507 :E 1ten 867 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=49213 # 1w61A.499.346 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)D503 (1w61A)T351 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :LHDV 1w61A 347 :KVPV T0547 504 :VEKE 1w61A 352 :KDAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=49215 # 1w6sA.499.111 read from T0547.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)D501 (1w6sA)W114 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1w6sA)G116 because S (epsilon) conformation "forbidden" or filtered. T0547 499 :LH 1w6sA 112 :AY T0547 502 :V 1w6sA 115 :P T0547 504 :VEKE 1w6sA 117 :DGKT Number of specific fragments extracted= 3 number of extra gaps= 2 total=49218 # 1olzA.499.276 read from T0547.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)D501 (1olzA)R279 because E (beta_S) conformation "forbidden" or filtered. T0547 499 :LH 1olzA 277 :VL T0547 502 :VDVEKE 1olzA 280 :SPGLKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=49220 # 1w96A.499.462 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 499 :LHDVDVEKE 1w96A 475 :LHELNFRSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=49221 # 1vns.499.87 read from T0547.t2k.many.frag # found chain 1vns in training set Warning: unaligning (T0547)V504 (1vns)N93 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1vns)G94 because T (delta_L) conformation "forbidden" or filtered. T0547 499 :LHDVD 1vns 88 :RLPSP T0547 506 :KE 1vns 95 :AN Number of specific fragments extracted= 2 number of extra gaps= 1 total=49223 # 1cpo.499.16 read from T0547.t2k.many.frag # found chain 1cpo in template set Warning: unaligning (T0547)D501 (1cpo)V18 because E (beta_S) conformation "forbidden" or filtered. T0547 499 :LH 1cpo 16 :PY T0547 502 :VDVEKE 1cpo 19 :APGPTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=49225 # 1oygA.499.387 read from T0547.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)H500 (1oygA)A415 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1oygA)G421 because S (epsilon) conformation "forbidden" or filtered. T0547 499 :L 1oygA 414 :F T0547 501 :DVDVE 1oygA 416 :VPQAK T0547 507 :E 1oygA 422 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=49228 # 2bpa2.500.130 read from T0547.t2k.many.frag # found chain 2bpa2 in template set T0547 500 :HDVDVEKEN 2bpa2 131 :VLPRTPGNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=49229 # 1s1dA.500.85 read from T0547.t2k.many.frag # found chain 1s1dA in training set T0547 500 :HDVDVEKEN 1s1dA 86 :SHLAEKGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49230 # 1zsoA.500.92 read from T0547.t2k.many.frag # found chain 1zsoA in template set T0547 500 :HDVDVEKEN 1zsoA 85 :YEEVNNNEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=49231 # 1gycA.500.186 read from T0547.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)K506 (1gycA)G193 because T (delta_L) conformation "forbidden" or filtered. T0547 500 :HDVDVE 1gycA 187 :VINVQH T0547 507 :EN 1gycA 194 :KR Number of specific fragments extracted= 2 number of extra gaps= 1 total=49233 # 1cv8.500.13 read from T0547.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)D501 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)E16 Warning: unaligning (T0547)V502 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)E16 Warning: unaligning (T0547)K506 (1cv8)N20 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1cv8)N21 because Y (epsilon') conformation "forbidden" or filtered. T0547 500 :H 1cv8 14 :I T0547 503 :DVE 1cv8 17 :TQG T0547 508 :N 1cv8 22 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=49236 # 1tg7A.500.744 read from T0547.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)E507 (1tg7A)K792 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDVDVEK 1tg7A 785 :LPTLQSG T0547 508 :N 1tg7A 793 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=49238 # 1m1lA.500.78 read from T0547.t2k.many.frag # found chain 1m1lA in template set Warning: unaligning (T0547)V504 (1m1lA)G109 because S (epsilon) conformation "forbidden" or filtered. T0547 500 :HDVD 1m1lA 105 :HEFT T0547 505 :EKEN 1m1lA 110 :TDGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=49240 # 2brfA.500.21 read from T0547.t2k.many.frag # found chain 2brfA in training set Warning: unaligning (T0547)D503 (2brfA)P25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (2brfA)D27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (2brfA)G28 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2brfA)A30 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDV 2brfA 22 :IFL T0547 504 :V 2brfA 26 :S T0547 507 :E 2brfA 29 :Q Number of specific fragments extracted= 3 number of extra gaps= 3 total=49243 # 1pbyB.500.138 read from T0547.t2k.many.frag # found chain 1pbyB in training set Warning: unaligning (T0547)E507 (1pbyB)G146 because T (delta_L) conformation "forbidden" or filtered. T0547 500 :HDVDVEK 1pbyB 139 :MLAWARD T0547 508 :N 1pbyB 147 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=49245 # 1l8aA.500.437 read from T0547.t2k.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)K506 (1l8aA)G444 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1l8aA)S445 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDVDVE 1l8aA 438 :YITFPE T0547 508 :N 1l8aA 446 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=49247 # 1kjlA.500.84 read from T0547.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)E505 (1kjlA)S194 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1kjlA)G195 because T (delta_L) conformation "forbidden" or filtered. T0547 500 :HDVDV 1kjlA 189 :VFPFE T0547 507 :EN 1kjlA 196 :KP Number of specific fragments extracted= 2 number of extra gaps= 1 total=49249 # 1suuA.500.39 read from T0547.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0547)E505 (1suuA)D543 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1suuA)G544 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1suuA)E546 because Y (epsilon') conformation "forbidden" or filtered. T0547 500 :HDVDV 1suuA 538 :SFDLN T0547 507 :E 1suuA 545 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=49251 1v04A expands to /projects/compbio/data/pdb/1v04.pdb.gz 1v04A:# 1v04A.500.117 read from T0547.t2k.many.frag # adding 1v04A to template set # found chain 1v04A in template set Warning: unaligning (T0547)E507 (1v04A)N125 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1v04A)T126 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDVDVEK 1v04A 118 :STFIDDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=49252 # 1lm8V.500.84 read from T0547.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)E505 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1lm8V)G144 because L (left) conformation "forbidden" or filtered. T0547 500 :HDVDV 1lm8V 138 :PSLNV T0547 507 :EN 1lm8V 145 :QP Number of specific fragments extracted= 2 number of extra gaps= 1 total=49254 # 1a8d.500.363 read from T0547.t2k.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)D501 (1a8d)G365 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1a8d)G370 because T (delta_L) conformation "forbidden" or filtered. T0547 500 :H 1a8d 364 :V T0547 502 :VDVE 1a8d 366 :YNAP T0547 507 :EN 1a8d 371 :IP Number of specific fragments extracted= 3 number of extra gaps= 2 total=49257 # 1w61A.500.347 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)E507 (1w61A)E355 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDVDVEK 1w61A 348 :VPVTKDA T0547 508 :N 1w61A 356 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=49259 # 1s3eA.500.329 read from T0547.t2k.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)E505 (1s3eA)G335 because T (delta_L) conformation "forbidden" or filtered. T0547 500 :HDVDV 1s3eA 330 :DTKPE T0547 506 :KEN 1s3eA 336 :NYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=49261 # 1w9zA.500.248 read from T0547.t2k.many.frag # found chain 1w9zA in template set T0547 500 :HDVDVEKEN 1w9zA 249 :LTTIPAVTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=49262 2jdxA expands to /projects/compbio/data/pdb/2jdx.pdb.gz 2jdxA:# 2jdxA.500.303 read from T0547.t2k.many.frag # adding 2jdxA to template set # found chain 2jdxA in template set Warning: unaligning (T0547)E507 (2jdxA)H349 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDVDVEK 2jdxA 342 :TPIIPDD T0547 508 :N 2jdxA 350 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=49264 # 1u20A.500.158 read from T0547.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)K506 (1u20A)R165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1u20A)G167 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDVDVE 1u20A 159 :LYTLRD T0547 507 :E 1u20A 166 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=49266 # 1uv4A.500.134 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)D501 (1uv4A)L136 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :H 1uv4A 135 :E T0547 502 :VDVEKEN 1uv4A 137 :TFDKDGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=49268 # 1w96A.500.463 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 500 :HDVDVEKEN 1w96A 476 :HELNFRSSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=49269 # 1cpo.500.17 read from T0547.t2k.many.frag # found chain 1cpo in template set T0547 500 :HDVDVEKEN 1cpo 17 :YVAPGPTDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=49270 # 1ten.500.58 read from T0547.t2k.many.frag # found chain 1ten in training set Warning: unaligning (T0547)D501 (1ten)G861 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1ten)D866 because L (left) conformation "forbidden" or filtered. T0547 500 :H 1ten 860 :I T0547 502 :VDVE 1ten 862 :NLKP T0547 507 :EN 1ten 867 :TE Number of specific fragments extracted= 3 number of extra gaps= 2 total=49273 # 1ntyA.500.260 read from T0547.t2k.many.frag # found chain 1ntyA in training set T0547 500 :HDVDVEKEN 1ntyA 1485 :VTEHVEGDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=49274 # 1eerB.500.183 read from T0547.t2k.many.frag # found chain 1eerB in template set Warning: unaligning (T0547)D501 (1eerB)S184 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1eerB)R189 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1eerB)T190 because E (beta_S) conformation "forbidden" or filtered. T0547 500 :H 1eerB 183 :L T0547 502 :VDVE 1eerB 185 :NLRG T0547 508 :N 1eerB 191 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=49277 # 1m4jA.500.57 read from T0547.t2k.many.frag # found chain 1m4jA in training set T0547 500 :HDVDVEKEN 1m4jA 58 :LPLLEDKQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=49278 # 1yq2A.500.678 read from T0547.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)E507 (1yq2A)G685 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1yq2A)E686 because E (beta_S) conformation "forbidden" or filtered. T0547 500 :HDVDVEK 1yq2A 678 :AMPAAPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=49279 # 1v4aA.500.225 read from T0547.t2k.many.frag # found chain 1v4aA in template set Warning: unaligning (T0547)D503 (1v4aA)F229 because L (left) conformation "forbidden" or filtered. T0547 500 :HDV 1v4aA 226 :LRP T0547 504 :VEKEN 1v4aA 230 :GESGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=49281 # 2biwA.500.188 read from T0547.t2k.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)H500 (2biwA)A189 because D (zeta) conformation "forbidden" or filtered. T0547 501 :DVDVEKEN 2biwA 190 :STFDGGQP Number of specific fragments extracted= 1 number of extra gaps= 1 total=49282 # 2bpa2.501.131 read from T0547.t2k.many.frag # found chain 2bpa2 in template set T0547 501 :DVDVEKENY 2bpa2 132 :LPRTPGNNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49283 # 1zsoA.501.93 read from T0547.t2k.many.frag # found chain 1zsoA in template set Warning: unaligning (T0547)V504 (1zsoA)N89 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1zsoA)N90 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DVD 1zsoA 86 :EEV T0547 506 :KENY 1zsoA 91 :NEWR Number of specific fragments extracted= 2 number of extra gaps= 1 total=49285 # 1s1dA.501.86 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)E505 (1s1dA)K91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1s1dA)G92 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 (1s1dA)M95 because L (left) conformation "forbidden" or filtered. T0547 501 :DVDV 1s1dA 87 :HLAE T0547 507 :EN 1s1dA 93 :RG Number of specific fragments extracted= 2 number of extra gaps= 2 total=49287 # 1gycA.501.187 read from T0547.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)N508 (1gycA)R195 because E (beta_S) conformation "forbidden" or filtered. T0547 501 :DVDVEKE 1gycA 188 :INVQHGK T0547 509 :Y 1gycA 196 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=49289 # 1cv8.501.14 read from T0547.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)D501 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)E16 Warning: unaligning (T0547)V502 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)E16 Warning: unaligning (T0547)E507 (1cv8)N21 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)C24 T0547 503 :DVEK 1cv8 17 :TQGN T0547 508 :N 1cv8 22 :G Number of specific fragments extracted= 2 number of extra gaps= 3 total=49291 # 1m1lA.501.79 read from T0547.t2k.many.frag # found chain 1m1lA in template set Warning: unaligning (T0547)V504 (1m1lA)G109 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1m1lA)G112 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DVD 1m1lA 106 :EFT T0547 505 :EK 1m1lA 110 :TD T0547 508 :NY 1m1lA 113 :PS Number of specific fragments extracted= 3 number of extra gaps= 2 total=49294 # 1tg7A.501.745 read from T0547.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)E505 (1tg7A)S790 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DVDV 1tg7A 786 :PTLQ T0547 506 :KENY 1tg7A 791 :GKNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=49296 # 1pbyB.501.139 read from T0547.t2k.many.frag # found chain 1pbyB in training set Warning: unaligning (T0547)E507 (1pbyB)G146 because T (delta_L) conformation "forbidden" or filtered. T0547 501 :DVDVEK 1pbyB 140 :LAWARD T0547 508 :NY 1pbyB 147 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=49298 # 1kjlA.501.85 read from T0547.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)K506 (1kjlA)G195 because T (delta_L) conformation "forbidden" or filtered. T0547 501 :DVDVE 1kjlA 190 :FPFES T0547 507 :ENY 1kjlA 196 :KPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=49300 # 1v04A.501.118 read from T0547.t2k.many.frag # found chain 1v04A in template set T0547 501 :DVDVEKENY 1v04A 119 :TFIDDDNTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49301 # 1suuA.501.40 read from T0547.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0547)D501 (1suuA)F539 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1suuA)G544 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1suuA)E546 because Y (epsilon') conformation "forbidden" or filtered. T0547 502 :VDVE 1suuA 540 :DLND T0547 507 :E 1suuA 545 :D T0547 509 :Y 1suuA 547 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=49304 # 2brfA.501.22 read from T0547.t2k.many.frag # found chain 2brfA in training set Warning: unaligning (T0547)D503 (2brfA)P25 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DV 2brfA 23 :FL T0547 504 :VEKENY 2brfA 26 :SDGQAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=49306 # 1lm8V.501.85 read from T0547.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)D503 (1lm8V)N141 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. T0547 501 :DV 1lm8V 139 :SL T0547 504 :V 1lm8V 142 :V T0547 506 :KENY 1lm8V 144 :GQPI Number of specific fragments extracted= 3 number of extra gaps= 2 total=49309 # 1uv4A.501.135 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)D501 (1uv4A)L136 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1uv4A)G142 because T (delta_L) conformation "forbidden" or filtered. T0547 502 :VDVEK 1uv4A 137 :TFDKD T0547 508 :NY 1uv4A 143 :NP Number of specific fragments extracted= 2 number of extra gaps= 2 total=49311 # 2biwA.501.189 read from T0547.t2k.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)V504 (2biwA)D193 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (2biwA)G194 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2biwA)P197 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DVD 2biwA 190 :STF T0547 506 :KE 2biwA 195 :GQ T0547 509 :Y 2biwA 198 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=49314 # 1l8aA.501.438 read from T0547.t2k.many.frag # found chain 1l8aA in template set T0547 501 :DVDVEKENY 1l8aA 439 :ITFPEGSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=49315 # 1s3eA.501.330 read from T0547.t2k.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)E505 (1s3eA)G335 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1s3eA)Y337 because L (left) conformation "forbidden" or filtered. T0547 501 :DVDV 1s3eA 331 :TKPE T0547 506 :K 1s3eA 336 :N T0547 508 :NY 1s3eA 338 :AA Number of specific fragments extracted= 3 number of extra gaps= 2 total=49318 # 1w61A.501.348 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)Y509 (1w61A)G357 because Y (epsilon') conformation "forbidden" or filtered. T0547 501 :DVDVEKEN 1w61A 349 :PVTKDAEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=49319 # 1v4aA.501.226 read from T0547.t2k.many.frag # found chain 1v4aA in template set Warning: unaligning (T0547)D503 (1v4aA)F229 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V504 (1v4aA)G230 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1v4aA)P234 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DV 1v4aA 227 :RP T0547 505 :EKE 1v4aA 231 :ESG T0547 509 :Y 1v4aA 235 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=49322 # 2jdxA.501.304 read from T0547.t2k.many.frag # found chain 2jdxA in template set Warning: unaligning (T0547)D501 (2jdxA)P343 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :VDVEKENY 2jdxA 344 :IIPDDHPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=49323 # 1iq4A.501.119 read from T0547.t2k.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)D503 (1iq4A)F122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1iq4A)G126 because T (delta_L) conformation "forbidden" or filtered. T0547 501 :DV 1iq4A 120 :KS T0547 504 :VEK 1iq4A 123 :DGR T0547 508 :NY 1iq4A 127 :NY Number of specific fragments extracted= 3 number of extra gaps= 2 total=49326 # 1yq2A.501.679 read from T0547.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)K506 (1yq2A)L684 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1yq2A)G685 because S (epsilon) conformation "forbidden" or filtered. T0547 501 :DVDVE 1yq2A 679 :MPAAP T0547 508 :NY 1yq2A 686 :ET Number of specific fragments extracted= 2 number of extra gaps= 1 total=49328 # 1a8d.501.364 read from T0547.t2k.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)D501 (1a8d)G365 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1a8d)N367 because D (zeta) conformation "forbidden" or filtered. T0547 502 :V 1a8d 366 :Y T0547 504 :VEKENY 1a8d 368 :APGIPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=49330 # 1pmhX.501.37 read from T0547.t2k.many.frag # found chain 1pmhX in training set T0547 501 :DVDVEKENY 1pmhX 38 :DLQRPGNKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=49331 # 1w9zA.501.249 read from T0547.t2k.many.frag # found chain 1w9zA in template set T0547 501 :DVDVEKENY 1w9zA 250 :TTIPAVTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49332 # 1kv7A.501.458 read from T0547.t2k.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)E505 (1kv7A)P491 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DVDV 1kv7A 487 :NHDA T0547 506 :KENY 1kv7A 492 :KEHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=49334 # 1eerB.501.184 read from T0547.t2k.many.frag # found chain 1eerB in template set Warning: unaligning (T0547)D501 (1eerB)S184 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V502 (1eerB)N185 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1eerB)R189 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1eerB)R191 because E (beta_S) conformation "forbidden" or filtered. T0547 503 :DVE 1eerB 186 :LRG T0547 507 :E 1eerB 190 :T T0547 509 :Y 1eerB 192 :Y Number of specific fragments extracted= 3 number of extra gaps= 3 total=49337 # 1ten.501.59 read from T0547.t2k.many.frag # found chain 1ten in training set Warning: unaligning (T0547)V502 (1ten)N862 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1ten)P865 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1ten)D866 because L (left) conformation "forbidden" or filtered. T0547 501 :D 1ten 861 :G T0547 503 :DV 1ten 863 :LK T0547 507 :ENY 1ten 867 :TEY Number of specific fragments extracted= 3 number of extra gaps= 2 total=49340 # 1w96A.501.464 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 501 :DVDVEKENY 1w96A 477 :ELNFRSSSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=49341 # 1m4jA.501.58 read from T0547.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)N508 (1m4jA)P66 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DVDVEKE 1m4jA 59 :PLLEDKQ T0547 509 :Y 1m4jA 67 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=49343 # 2bpa2.502.132 read from T0547.t2k.many.frag # found chain 2bpa2 in template set T0547 502 :VDVEKENYF 2bpa2 133 :PRTPGNNVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=49344 # 1zsoA.502.94 read from T0547.t2k.many.frag # found chain 1zsoA in template set T0547 502 :VDVEKENYF 1zsoA 87 :EVNNNEWRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=49345 # 1gycA.502.188 read from T0547.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)D503 (1gycA)V190 because E (beta_S) conformation "forbidden" or filtered. T0547 502 :V 1gycA 189 :N T0547 504 :VEKENYF 1gycA 191 :QHGKRYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=49347 # 1m1lA.502.80 read from T0547.t2k.many.frag # found chain 1m1lA in template set Warning: unaligning (T0547)E507 (1m1lA)G112 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :VDVEK 1m1lA 107 :FTGTD T0547 508 :NYF 1m1lA 113 :PSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=49349 # 1cv8.502.15 read from T0547.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)V502 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)E16 Warning: unaligning (T0547)E507 (1cv8)N21 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1cv8)G22 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)C24 Warning: unaligning (T0547)F510 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)C24 T0547 503 :DVEK 1cv8 17 :TQGN Number of specific fragments extracted= 1 number of extra gaps= 2 total=49350 # 1s1dA.502.87 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)E505 (1s1dA)K91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1s1dA)G92 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1s1dA)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 (1s1dA)M95 because L (left) conformation "forbidden" or filtered. T0547 502 :VDV 1s1dA 88 :LAE T0547 507 :E 1s1dA 93 :R T0547 510 :F 1s1dA 96 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=49353 # 1tg7A.502.746 read from T0547.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)K506 (1tg7A)G791 because T (delta_L) conformation "forbidden" or filtered. T0547 502 :VDVE 1tg7A 787 :TLQS T0547 507 :ENYF 1tg7A 792 :KNYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=49355 # 2biwA.502.190 read from T0547.t2k.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)V504 (2biwA)D193 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (2biwA)G194 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (2biwA)G195 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2biwA)P197 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :VD 2biwA 191 :TF T0547 507 :E 2biwA 196 :Q T0547 509 :YF 2biwA 198 :CY Number of specific fragments extracted= 3 number of extra gaps= 2 total=49358 # 1s3eA.502.331 read from T0547.t2k.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)Y509 (1s3eA)A339 because Y (epsilon') conformation "forbidden" or filtered. T0547 502 :VDVEKEN 1s3eA 332 :KPEGNYA T0547 510 :F 1s3eA 340 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=49360 # 1kjlA.502.86 read from T0547.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)E507 (1kjlA)K196 because E (beta_S) conformation "forbidden" or filtered. T0547 502 :VDVEK 1kjlA 191 :PFESG T0547 508 :NYF 1kjlA 197 :PFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=49362 # 1v04A.502.119 read from T0547.t2k.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)E507 (1v04A)N125 because T (delta_L) conformation "forbidden" or filtered. T0547 502 :VDVEK 1v04A 120 :FIDDD T0547 508 :NYF 1v04A 126 :TVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=49364 # 1pbyB.502.140 read from T0547.t2k.many.frag # found chain 1pbyB in training set T0547 502 :VDVEKENYF 1pbyB 141 :AWARDGSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49365 # 1suuA.502.41 read from T0547.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0547)E505 (1suuA)D543 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1suuA)G544 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1suuA)E546 because Y (epsilon') conformation "forbidden" or filtered. T0547 502 :VDV 1suuA 540 :DLN T0547 507 :E 1suuA 545 :D T0547 509 :YF 1suuA 547 :IV Number of specific fragments extracted= 3 number of extra gaps= 2 total=49368 # 2brfA.502.23 read from T0547.t2k.many.frag # found chain 2brfA in training set Warning: unaligning (T0547)D503 (2brfA)P25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (2brfA)D27 because L (left) conformation "forbidden" or filtered. T0547 502 :V 2brfA 24 :L T0547 504 :V 2brfA 26 :S T0547 506 :KENYF 2brfA 28 :GQALV Number of specific fragments extracted= 3 number of extra gaps= 2 total=49371 # 1lm8V.502.86 read from T0547.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)E505 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1lm8V)G144 because L (left) conformation "forbidden" or filtered. T0547 502 :VDV 1lm8V 140 :LNV T0547 507 :ENYF 1lm8V 145 :QPIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=49373 # 1kv7A.502.459 read from T0547.t2k.many.frag # found chain 1kv7A in training set T0547 502 :VDVEKENYF 1kv7A 488 :HDAPKEHAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=49374 # 1yq2A.502.680 read from T0547.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)E507 (1yq2A)G685 because S (epsilon) conformation "forbidden" or filtered. T0547 502 :VDVEK 1yq2A 680 :PAAPL T0547 508 :NYF 1yq2A 686 :ETW Number of specific fragments extracted= 2 number of extra gaps= 1 total=49376 # 1iq4A.502.120 read from T0547.t2k.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)V504 (1iq4A)D123 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1iq4A)G124 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1iq4A)G126 because T (delta_L) conformation "forbidden" or filtered. T0547 502 :VD 1iq4A 121 :SF T0547 506 :K 1iq4A 125 :R T0547 508 :NYF 1iq4A 127 :NYT Number of specific fragments extracted= 3 number of extra gaps= 2 total=49379 # 1qz8A.502.32 read from T0547.t2k.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)V504 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1qz8A)K36 Warning: unaligning (T0547)E505 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1qz8A)K36 Warning: unaligning (T0547)N508 (1qz8A)R39 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :VD 1qz8A 33 :NN T0547 506 :KE 1qz8A 37 :GG T0547 509 :YF 1qz8A 40 :FV Number of specific fragments extracted= 3 number of extra gaps= 2 total=49382 # 1olzA.502.279 read from T0547.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)N508 (1olzA)P286 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :VDVEKE 1olzA 280 :SPGLKV T0547 509 :YF 1olzA 287 :VF Number of specific fragments extracted= 2 number of extra gaps= 1 total=49384 # 1uv4A.502.136 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)V502 (1uv4A)T137 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1uv4A)G142 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DVEK 1uv4A 138 :FDKD T0547 508 :NYF 1uv4A 143 :NPW Number of specific fragments extracted= 2 number of extra gaps= 2 total=49386 # 1eerB.502.185 read from T0547.t2k.many.frag # found chain 1eerB in template set Warning: unaligning (T0547)V502 (1eerB)N185 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1eerB)G188 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1eerB)T190 because E (beta_S) conformation "forbidden" or filtered. T0547 503 :DV 1eerB 186 :LR T0547 506 :K 1eerB 189 :R T0547 508 :NYF 1eerB 191 :RYT Number of specific fragments extracted= 3 number of extra gaps= 3 total=49389 # 1v4aA.502.227 read from T0547.t2k.many.frag # found chain 1v4aA in template set Warning: unaligning (T0547)D503 (1v4aA)F229 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1v4aA)G233 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :V 1v4aA 228 :P T0547 504 :VEK 1v4aA 230 :GES T0547 508 :NYF 1v4aA 234 :PLV Number of specific fragments extracted= 3 number of extra gaps= 2 total=49392 # 1w9zA.502.250 read from T0547.t2k.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)E507 (1w9zA)T256 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :VDVEK 1w9zA 251 :TIPAV T0547 508 :NYF 1w9zA 257 :PLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=49394 # 1wleA.502.270 read from T0547.t2k.many.frag # found chain 1wleA in training set T0547 502 :VDVEKENYF 1wleA 271 :PSRFEDLNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49395 # 2a6zA.502.185 read from T0547.t2k.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)E507 (2a6zA)G196 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2a6zA)S197 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :VDVEK 2a6zA 191 :VRFPS T0547 509 :YF 2a6zA 198 :YR Number of specific fragments extracted= 2 number of extra gaps= 1 total=49397 # 1ten.502.60 read from T0547.t2k.many.frag # found chain 1ten in training set T0547 502 :VDVEKENYF 1ten 862 :NLKPDTEYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=49398 # 1w61A.502.349 read from T0547.t2k.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)D503 (1w61A)T351 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :V 1w61A 350 :V T0547 504 :VEKENYF 1w61A 352 :KDAEEGM Number of specific fragments extracted= 2 number of extra gaps= 1 total=49400 # 1w96A.502.465 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 502 :VDVEKENYF 1w96A 478 :LNFRSSSNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49401 # 1qs1A.502.394 read from T0547.t2k.many.frag # found chain 1qs1A in training set T0547 502 :VDVEKENYF 1qs1A 395 :AAFGSRKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=49402 # 2bpa2.503.133 read from T0547.t2k.many.frag # found chain 2bpa2 in template set T0547 503 :DVEKENYFL 2bpa2 134 :RTPGNNVYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49403 # 1gycA.503.189 read from T0547.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)D503 (1gycA)V190 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1gycA)G193 because T (delta_L) conformation "forbidden" or filtered. T0547 504 :VE 1gycA 191 :QH T0547 507 :ENYFL 1gycA 194 :KRYRF Number of specific fragments extracted= 2 number of extra gaps= 2 total=49405 # 1zsoA.503.95 read from T0547.t2k.many.frag # found chain 1zsoA in template set T0547 503 :DVEKENYFL 1zsoA 88 :VNNNEWRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=49406 # 1cv8.503.16 read from T0547.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)E505 (1cv8)G19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)C24 Warning: unaligning (T0547)F510 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)C24 T0547 503 :DV 1cv8 17 :TQ T0547 506 :KEN 1cv8 20 :NNG T0547 511 :L 1cv8 25 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=49409 # 1s3eA.503.332 read from T0547.t2k.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)E507 (1s3eA)Y337 because L (left) conformation "forbidden" or filtered. T0547 503 :DVEK 1s3eA 333 :PEGN T0547 508 :NYFL 1s3eA 338 :AAIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=49411 # 1m1lA.503.81 read from T0547.t2k.many.frag # found chain 1m1lA in template set T0547 503 :DVEKENYFL 1m1lA 108 :TGTDGPSGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=49412 # 2biwA.503.191 read from T0547.t2k.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)E505 (2biwA)G194 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2biwA)P197 because P (beta_P) conformation "forbidden" or filtered. T0547 503 :DV 2biwA 192 :FD T0547 506 :KE 2biwA 195 :GQ T0547 509 :YFL 2biwA 198 :CYV Number of specific fragments extracted= 3 number of extra gaps= 2 total=49415 # 1tg7A.503.747 read from T0547.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)E505 (1tg7A)S790 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1tg7A)G791 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1tg7A)K792 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1tg7A)N793 because P (beta_P) conformation "forbidden" or filtered. T0547 503 :DV 1tg7A 788 :LQ T0547 509 :YFL 1tg7A 794 :YVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=49417 # 1s1dA.503.88 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)E505 (1s1dA)K91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 (1s1dA)M95 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L511 because of BadResidue code BAD_PEPTIDE in next template residue (1s1dA)S98 T0547 503 :DV 1s1dA 89 :AE T0547 506 :KEN 1s1dA 92 :GRG T0547 510 :F 1s1dA 96 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=49420 # 1lm8V.503.87 read from T0547.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)E505 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1lm8V)G144 because L (left) conformation "forbidden" or filtered. T0547 503 :DV 1lm8V 141 :NV T0547 507 :ENYFL 1lm8V 145 :QPIFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=49422 # 1kjlA.503.87 read from T0547.t2k.many.frag # found chain 1kjlA in template set T0547 503 :DVEKENYFL 1kjlA 192 :FESGKPFKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49423 # 1kv7A.503.460 read from T0547.t2k.many.frag # found chain 1kv7A in training set T0547 503 :DVEKENYFL 1kv7A 489 :DAPKEHAYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=49424 # 2erfA.503.84 read from T0547.t2k.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)N508 (2erfA)G96 because S (epsilon) conformation "forbidden" or filtered. T0547 503 :DVEKE 2erfA 91 :RKDHS T0547 509 :YFL 2erfA 97 :QVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=49426 # 1iq4A.503.121 read from T0547.t2k.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)E505 (1iq4A)G124 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1iq4A)G126 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DV 1iq4A 122 :FD T0547 506 :K 1iq4A 125 :R T0547 508 :NYFL 1iq4A 127 :NYTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=49429 # 1olzA.503.280 read from T0547.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)N508 (1olzA)P286 because P (beta_P) conformation "forbidden" or filtered. T0547 503 :DVEKE 1olzA 281 :PGLKV T0547 509 :YFL 1olzA 287 :VFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=49431 # 1v04A.503.120 read from T0547.t2k.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)E507 (1v04A)N125 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DVEK 1v04A 121 :IDDD T0547 508 :NYFL 1v04A 126 :TVYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=49433 # 1yq2A.503.681 read from T0547.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)E507 (1yq2A)G685 because S (epsilon) conformation "forbidden" or filtered. T0547 503 :DVEK 1yq2A 681 :AAPL T0547 508 :NYFL 1yq2A 686 :ETWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=49435 # 2brfA.503.24 read from T0547.t2k.many.frag # found chain 2brfA in training set Warning: unaligning (T0547)D503 (2brfA)P25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (2brfA)G28 because T (delta_L) conformation "forbidden" or filtered. T0547 504 :VE 2brfA 26 :SD T0547 507 :ENYFL 2brfA 29 :QALVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=49437 # 1m4jA.503.60 read from T0547.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)D503 (1m4jA)L61 because N (gamma') conformation "forbidden" or filtered. T0547 504 :VEKENYFL 1m4jA 62 :EDKQPCYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=49438 # 1eerB.503.186 read from T0547.t2k.many.frag # found chain 1eerB in template set Warning: unaligning (T0547)E505 (1eerB)G188 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1eerB)R189 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1eerB)T190 because E (beta_S) conformation "forbidden" or filtered. T0547 503 :DV 1eerB 186 :LR T0547 508 :NYFL 1eerB 191 :RYTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=49440 # 1uv4A.503.137 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)E507 (1uv4A)G142 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DVEK 1uv4A 138 :FDKD T0547 508 :NYFL 1uv4A 143 :NPWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=49442 # 1pbyB.503.141 read from T0547.t2k.many.frag # found chain 1pbyB in training set T0547 503 :DVEKENYFL 1pbyB 142 :WARDGSKLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=49443 # 1ypyA.503.136 read from T0547.t2k.many.frag # found chain 1ypyA in training set Warning: unaligning (T0547)E507 (1ypyA)S142 because D (zeta) conformation "forbidden" or filtered. T0547 503 :DVEK 1ypyA 138 :GAPG T0547 508 :NYFL 1ypyA 143 :PTNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=49445 # 1qz8A.503.33 read from T0547.t2k.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)V504 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1qz8A)K36 Warning: unaligning (T0547)E505 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1qz8A)K36 Warning: unaligning (T0547)E507 (1qz8A)G38 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1qz8A)R39 because P (beta_P) conformation "forbidden" or filtered. T0547 503 :D 1qz8A 34 :N T0547 506 :K 1qz8A 37 :G T0547 509 :YFL 1qz8A 40 :FVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=49448 # 1h6fA.503.44 read from T0547.t2k.many.frag # found chain 1h6fA in training set T0547 503 :DVEKENYFL 1h6fA 143 :LDKKAKYIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49449 # 1t7lA.503.687 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 503 :DVEKENYFL 1t7lA 656 :NFKGWIKQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49450 1msk expands to /projects/compbio/data/pdb/1msk.pdb.gz 1msk:Warning: there is no chain 1msk will retry with 1mskA # 1msk.503.153 read from T0547.t2k.many.frag # adding 1msk to template set # found chain 1msk in template set T0547 503 :DVEKENYFL 1msk 1050 :KLSGKADYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49451 # 1x8qA.503.98 read from T0547.t2k.many.frag # found chain 1x8qA in training set Warning: unaligning (T0547)K506 (1x8qA)G102 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DVE 1x8qA 99 :VTA T0547 507 :ENYFL 1x8qA 103 :NYYTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=49453 # 1w9zA.503.251 read from T0547.t2k.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)D503 (1w9zA)I252 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1w9zA)T256 because P (beta_P) conformation "forbidden" or filtered. T0547 504 :VEK 1w9zA 253 :PAV T0547 508 :NYFL 1w9zA 257 :PLIF Number of specific fragments extracted= 2 number of extra gaps= 2 total=49455 # 1m0wA.503.272 read from T0547.t2k.many.frag # found chain 1m0wA in training set Warning: unaligning (T0547)K506 (1m0wA)E276 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1m0wA)Q277 because P (beta_P) conformation "forbidden" or filtered. T0547 503 :DVE 1m0wA 273 :RDT T0547 508 :NYFL 1m0wA 278 :EIAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=49457 # 2bpa2.504.134 read from T0547.t2k.many.frag # found chain 2bpa2 in template set T0547 504 :VEKENYFLG 2bpa2 135 :TPGNNVYVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49458 # 1gycA.504.190 read from T0547.t2k.many.frag # found chain 1gycA in template set T0547 504 :VEKENYFLG 1gycA 191 :QHGKRYRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=49459 # 1zsoA.504.96 read from T0547.t2k.many.frag # found chain 1zsoA in template set Warning: unaligning (T0547)K506 (1zsoA)N91 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1zsoA)W93 because P (beta_P) conformation "forbidden" or filtered. T0547 504 :VE 1zsoA 89 :NN T0547 507 :E 1zsoA 92 :E T0547 509 :YFLG 1zsoA 94 :RDFA Number of specific fragments extracted= 3 number of extra gaps= 2 total=49462 # 2biwA.504.192 read from T0547.t2k.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)G512 (2biwA)T201 because Y (epsilon') conformation "forbidden" or filtered. T0547 504 :VEKENYFL 2biwA 193 :DGGQPCYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=49463 # 1cv8.504.17 read from T0547.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)E505 (1cv8)G19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1cv8)N21 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1cv8)G22 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)C24 Warning: unaligning (T0547)F510 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)C24 T0547 504 :V 1cv8 18 :Q T0547 506 :K 1cv8 20 :N T0547 511 :LG 1cv8 25 :AG Number of specific fragments extracted= 3 number of extra gaps= 2 total=49466 # 2erfA.504.85 read from T0547.t2k.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)G512 (2erfA)S100 because Y (epsilon') conformation "forbidden" or filtered. T0547 504 :VEKENYFL 2erfA 92 :KDHSGQVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=49467 # 1tg7A.504.748 read from T0547.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)G512 (1tg7A)T797 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VEKENYFL 1tg7A 789 :QSGKNYVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=49468 # 1s3eA.504.333 read from T0547.t2k.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)K506 (1s3eA)N336 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1s3eA)Y337 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1s3eA)G342 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VE 1s3eA 334 :EG T0547 508 :NYFL 1s3eA 338 :AAIM Number of specific fragments extracted= 2 number of extra gaps= 2 total=49470 # 1lm8V.504.88 read from T0547.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)E505 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1lm8V)G144 because L (left) conformation "forbidden" or filtered. T0547 504 :V 1lm8V 142 :V T0547 507 :ENYFLG 1lm8V 145 :QPIFAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=49472 # 1yq2A.504.682 read from T0547.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)E507 (1yq2A)G685 because S (epsilon) conformation "forbidden" or filtered. T0547 504 :VEK 1yq2A 682 :APL T0547 508 :NYFLG 1yq2A 686 :ETWLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=49474 # 1kv7A.504.461 read from T0547.t2k.many.frag # found chain 1kv7A in training set T0547 504 :VEKENYFLG 1kv7A 490 :APKEHAYMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49475 # 1uv4A.504.138 read from T0547.t2k.many.frag # found chain 1uv4A in training set T0547 504 :VEKENYFLG 1uv4A 139 :DKDGNPWLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49476 # 1msk.504.154 read from T0547.t2k.many.frag # found chain 1msk in template set Warning: unaligning (T0547)K506 (1msk)G1053 because T (delta_L) conformation "forbidden" or filtered. T0547 504 :VE 1msk 1051 :LS T0547 507 :ENYFLG 1msk 1054 :KADYIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=49478 # 1kjlA.504.88 read from T0547.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)E505 (1kjlA)S194 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1kjlA)G195 because T (delta_L) conformation "forbidden" or filtered. T0547 504 :V 1kjlA 193 :E T0547 507 :ENYFLG 1kjlA 196 :KPFKIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=49480 1qqp3 expands to /projects/compbio/data/pdb/1qqp.pdb.gz 1qqp3:# 1qqp3.504.66 read from T0547.t2k.many.frag # adding 1qqp3 to template set # found chain 1qqp3 in template set Warning: unaligning (T0547)K506 (1qqp3)D69 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1qqp3)A75 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VE 1qqp3 67 :KT T0547 507 :ENYFL 1qqp3 70 :SDRVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=49482 # 1ypyA.504.137 read from T0547.t2k.many.frag # found chain 1ypyA in training set Warning: unaligning (T0547)G512 (1ypyA)E147 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VEKENYFL 1ypyA 139 :APGSPTNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=49483 # 1t7lA.504.688 read from T0547.t2k.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)K506 (1t7lA)G659 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1t7lA)I661 because G (3-10) conformation "forbidden" or filtered. T0547 504 :VE 1t7lA 657 :FK T0547 507 :E 1t7lA 660 :W T0547 509 :YFLG 1t7lA 662 :KQIG Number of specific fragments extracted= 3 number of extra gaps= 2 total=49486 # 1olzA.504.281 read from T0547.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)V504 (1olzA)G282 because G (3-10) conformation "forbidden" or filtered. T0547 505 :EKENYFLG 1olzA 283 :LKVPVFYA Number of specific fragments extracted= 1 number of extra gaps= 1 total=49487 # 1m1lA.504.82 read from T0547.t2k.many.frag # found chain 1m1lA in template set Warning: unaligning (T0547)V504 (1m1lA)G109 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1m1lA)G112 because P (beta_P) conformation "forbidden" or filtered. T0547 505 :EK 1m1lA 110 :TD T0547 508 :NYFLG 1m1lA 113 :PSGFG Number of specific fragments extracted= 2 number of extra gaps= 2 total=49489 # 1m4jA.504.61 read from T0547.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)G512 (1m4jA)L70 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VEKENYFL 1m4jA 62 :EDKQPCYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=49490 # 1s1dA.504.89 read from T0547.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)E505 (1s1dA)K91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1s1dA)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L511 because of BadResidue code BAD_PEPTIDE in next template residue (1s1dA)S98 Warning: unaligning (T0547)G512 because of BadResidue code BAD_PEPTIDE at template residue (1s1dA)S98 T0547 504 :V 1s1dA 90 :E T0547 506 :KE 1s1dA 92 :GR T0547 509 :YF 1s1dA 95 :ME Number of specific fragments extracted= 3 number of extra gaps= 3 total=49493 # 1pbyB.504.142 read from T0547.t2k.many.frag # found chain 1pbyB in training set T0547 504 :VEKENYFLG 1pbyB 143 :ARDGSKLYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49494 # 1iq4A.504.122 read from T0547.t2k.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)N508 (1iq4A)N127 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VEKE 1iq4A 123 :DGRG T0547 509 :YFLG 1iq4A 128 :YTLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=49496 # 1w6sA.504.116 read from T0547.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)V504 (1w6sA)D117 because G (3-10) conformation "forbidden" or filtered. T0547 505 :EKENYFLG 1w6sA 118 :GKTPALIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=49497 # 1y4wA.504.98 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)V504 (1y4wA)K118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1y4wA)G120 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 because of BadResidue code BAD_PEPTIDE in next template residue (1y4wA)L124 Warning: unaligning (T0547)F510 because of BadResidue code BAD_PEPTIDE at template residue (1y4wA)L124 T0547 505 :E 1y4wA 119 :D T0547 507 :EN 1y4wA 121 :KT T0547 511 :LG 1y4wA 125 :VA Number of specific fragments extracted= 3 number of extra gaps= 3 total=49500 # 1q79A.504.426 read from T0547.t2k.many.frag # found chain 1q79A in template set T0547 504 :VEKENYFLG 1q79A 427 :NPDKEEFRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=49501 # 1h6fA.504.45 read from T0547.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)G512 (1h6fA)L152 because Y (epsilon') conformation "forbidden" or filtered. T0547 504 :VEKENYFL 1h6fA 144 :DKKAKYIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=49502 # 1kcmA.504.183 read from T0547.t2k.many.frag # found chain 1kcmA in template set Warning: unaligning (T0547)K506 (1kcmA)D187 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1kcmA)A193 because P (beta_P) conformation "forbidden" or filtered. T0547 504 :VE 1kcmA 185 :QK T0547 507 :ENYFL 1kcmA 188 :CPYMC Number of specific fragments extracted= 2 number of extra gaps= 2 total=49504 # 1m0wA.504.273 read from T0547.t2k.many.frag # found chain 1m0wA in training set Warning: unaligning (T0547)V504 (1m0wA)D274 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1m0wA)E278 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1m0wA)V282 because D (zeta) conformation "forbidden" or filtered. T0547 505 :EKE 1m0wA 275 :TEQ T0547 509 :YFL 1m0wA 279 :IAV Number of specific fragments extracted= 2 number of extra gaps= 3 total=49506 # 1d02A.504.141 read from T0547.t2k.many.frag # found chain 1d02A in training set Warning: unaligning (T0547)E507 (1d02A)I145 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1d02A)L146 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1d02A)V150 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VEK 1d02A 142 :DEE T0547 509 :YFL 1d02A 147 :PFW Number of specific fragments extracted= 2 number of extra gaps= 2 total=49508 # 2bpa2.505.135 read from T0547.t2k.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0547)E507 (2bpa2)N138 because P (beta_P) conformation "forbidden" or filtered. T0547 505 :EK 2bpa2 136 :PG T0547 508 :NYFLGF 2bpa2 139 :NVYVGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=49510 # 1gycA.505.191 read from T0547.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)G512 (1gycA)R199 because D (zeta) conformation "forbidden" or filtered. T0547 505 :EKENYFL 1gycA 192 :HGKRYRF T0547 513 :F 1gycA 200 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=49512 # 1kv7A.505.462 read from T0547.t2k.many.frag # found chain 1kv7A in training set T0547 505 :EKENYFLGF 1kv7A 491 :PKEHAYMAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=49513 # 1msk.505.155 read from T0547.t2k.many.frag # found chain 1msk in template set T0547 505 :EKENYFLGF 1msk 1052 :SGKADYIGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49514 # 2erfA.505.86 read from T0547.t2k.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)K506 (2erfA)H94 because T (delta_L) conformation "forbidden" or filtered. T0547 505 :E 2erfA 93 :D T0547 507 :ENYFLGF 2erfA 95 :SGQVFSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=49516 # 1zsoA.505.97 read from T0547.t2k.many.frag # found chain 1zsoA in template set Warning: unaligning (T0547)E505 (1zsoA)N90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1zsoA)N91 because T (delta_L) conformation "forbidden" or filtered. T0547 507 :ENYFLGF 1zsoA 92 :EWRDFAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=49517 # 1s3eA.505.334 read from T0547.t2k.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)E507 (1s3eA)Y337 because L (left) conformation "forbidden" or filtered. T0547 505 :EK 1s3eA 335 :GN T0547 508 :NYFLGF 1s3eA 338 :AAIMGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=49519 # 1tg7A.505.749 read from T0547.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)K506 (1tg7A)G791 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1tg7A)K792 because P (beta_P) conformation "forbidden" or filtered. T0547 505 :E 1tg7A 790 :S T0547 508 :NYFLGF 1tg7A 793 :NYVITV Number of specific fragments extracted= 2 number of extra gaps= 1 total=49521 # 1t7lA.505.689 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 505 :EKENYFLGF 1t7lA 658 :KGWIKQIGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49522 # 1olzA.505.282 read from T0547.t2k.many.frag # found chain 1olzA in template set T0547 505 :EKENYFLGF 1olzA 283 :LKVPVFYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49523 # 1usyA.505.120 read from T0547.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)G512 (1usyA)E128 because P (beta_P) conformation "forbidden" or filtered. T0547 505 :EKENYFL 1usyA 121 :FEGPVIV T0547 513 :F 1usyA 129 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=49525 # 2biwA.505.193 read from T0547.t2k.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)E505 (2biwA)G194 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (2biwA)G195 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2biwA)P197 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (2biwA)T201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F513 (2biwA)F202 because Y (epsilon') conformation "forbidden" or filtered. T0547 507 :E 2biwA 196 :Q T0547 509 :YFL 2biwA 198 :CYV Number of specific fragments extracted= 2 number of extra gaps= 3 total=49527 # 1qqp3.505.67 read from T0547.t2k.many.frag # found chain 1qqp3 in template set T0547 505 :EKENYFLGF 1qqp3 68 :TDSDRVLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=49528 # 2b5gA.505.65 read from T0547.t2k.many.frag # found chain 2b5gA in training set T0547 505 :EKENYFLGF 2b5gA 66 :PEGHSIVGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=49529 # 1pbyB.505.143 read from T0547.t2k.many.frag # found chain 1pbyB in training set T0547 505 :EKENYFLGF 1pbyB 144 :RDGSKLYGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49530 # 1ypyA.505.138 read from T0547.t2k.many.frag # found chain 1ypyA in training set T0547 505 :EKENYFLGF 1ypyA 140 :PGSPTNLEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=49531 # 1y4wA.505.99 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)K506 (1y4wA)G120 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 because of BadResidue code BAD_PEPTIDE in next template residue (1y4wA)L124 Warning: unaligning (T0547)F510 because of BadResidue code BAD_PEPTIDE at template residue (1y4wA)L124 T0547 505 :E 1y4wA 119 :D T0547 507 :EN 1y4wA 121 :KT T0547 511 :LGF 1y4wA 125 :VAM Number of specific fragments extracted= 3 number of extra gaps= 2 total=49534 # 1wddA.505.368 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)E505 (1wddA)V369 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1wddA)S370 because T (delta_L) conformation "forbidden" or filtered. T0547 507 :ENYFLGF 1wddA 371 :MPGVIPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=49535 # 1kjlA.505.89 read from T0547.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)E505 (1kjlA)S194 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1kjlA)Q201 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :KENYFL 1kjlA 195 :GKPFKI T0547 513 :F 1kjlA 202 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=49537 # 1w96A.505.468 read from T0547.t2k.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)G512 (1w96A)G488 because Y (epsilon') conformation "forbidden" or filtered. T0547 505 :EKENYFL 1w96A 481 :RSSSNVW T0547 513 :F 1w96A 489 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=49539 # 1m4jA.505.62 read from T0547.t2k.many.frag # found chain 1m4jA in training set T0547 505 :EKENYFLGF 1m4jA 63 :DKQPCYVLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=49540 # 1yq2A.505.683 read from T0547.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)K506 (1yq2A)L684 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1yq2A)G685 because S (epsilon) conformation "forbidden" or filtered. T0547 505 :E 1yq2A 683 :P T0547 508 :NYFLGF 1yq2A 686 :ETWLTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=49542 # 1pmhX.505.41 read from T0547.t2k.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)K506 (1pmhX)G43 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1pmhX)R49 because E (beta_S) conformation "forbidden" or filtered. T0547 505 :E 1pmhX 42 :P T0547 507 :ENYFL 1pmhX 44 :NKYAL T0547 513 :F 1pmhX 50 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=49545 # 1uv4A.505.139 read from T0547.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)E507 (1uv4A)G142 because T (delta_L) conformation "forbidden" or filtered. T0547 505 :EK 1uv4A 140 :KD T0547 508 :NYFLGF 1uv4A 143 :NPWLAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=49547 # 1d02A.505.142 read from T0547.t2k.many.frag # found chain 1d02A in training set Warning: unaligning (T0547)N508 (1d02A)L146 because P (beta_P) conformation "forbidden" or filtered. T0547 505 :EKE 1d02A 143 :EEI T0547 509 :YFLGF 1d02A 147 :PFWVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=49549 # 1m0wA.505.274 read from T0547.t2k.many.frag # found chain 1m0wA in training set T0547 505 :EKENYFLGF 1m0wA 275 :TEQEIAVVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=49550 2atfA expands to /projects/compbio/data/pdb/2atf.pdb.gz 2atfA:Skipped atom 75, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 79, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 81, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 83, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 85, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 221, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 223, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 225, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 227, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 229, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 262, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 266, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 268, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 270, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 307, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 311, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 313, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 315, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 317, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 319, because occupancy 0.500 <= existing 0.500 in 2atfA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 664, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 668, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 670, because occupancy 0.500 <= existing 0.500 in 2atfA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1044, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1048, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1050, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1052, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1054, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1056, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1106, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1110, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1112, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1145, because occupancy 0.250 <= existing 0.250 in 2atfA Skipped atom 1150, because occupancy 0.250 <= existing 0.250 in 2atfA Skipped atom 1153, because occupancy 0.250 <= existing 0.250 in 2atfA Skipped atom 1156, because occupancy 0.250 <= existing 0.250 in 2atfA Skipped atom 1159, because occupancy 0.250 <= existing 0.250 in 2atfA Skipped atom 1162, because occupancy 0.250 <= existing 0.250 in 2atfA Skipped atom 1165, because occupancy 0.250 <= existing 0.250 in 2atfA Skipped atom 1168, because occupancy 0.250 <= existing 0.250 in 2atfA Skipped atom 1235, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1239, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1241, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1243, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1397, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1401, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1403, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1405, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1407, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1409, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1411, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1413, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1427, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1431, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1433, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1435, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1437, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1439, because occupancy 0.500 <= existing 0.500 in 2atfA Skipped atom 1441, because occupancy 0.500 <= existing 0.500 in 2atfA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1484, because occupancy 0.500 <= existing 0.500 in 2atfA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1488, because occupancy 0.500 <= existing 0.500 in 2atfA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1490, because occupancy 0.500 <= existing 0.500 in 2atfA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1492, because occupancy 0.500 <= existing 0.500 in 2atfA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1494, because occupancy 0.500 <= existing 0.500 in 2atfA # 2atfA.505.146 read from T0547.t2k.many.frag # adding 2atfA to template set # found chain 2atfA in template set T0547 505 :EKENYFLGF 2atfA 147 :HTEPAVSLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=49551 # 1cv8.505.18 read from T0547.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)K506 (1cv8)N20 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)C24 Warning: unaligning (T0547)F510 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)C24 T0547 505 :E 1cv8 19 :G T0547 507 :EN 1cv8 21 :NG T0547 511 :LGF 1cv8 25 :AGY Number of specific fragments extracted= 3 number of extra gaps= 2 total=49554 1k8wA expands to /projects/compbio/data/pdb/1k8w.pdb.gz 1k8wA:Skipped atom 815, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 817, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 819, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 821, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 823, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 825, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 827, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 829, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1693, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1695, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1697, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1699, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1701, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1703, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1705, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1707, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2083, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2085, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2087, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2089, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2091, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2093, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2095, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2203, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2205, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2207, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2209, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2211, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2213, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2215, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2217, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2219, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2263, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2265, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2267, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2269, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2271, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2273, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2275, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2277, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2279, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2767, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2769, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2771, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2773, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2775, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2777, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2779, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2781, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2783, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2785, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2787, because occupancy 0.500 <= existing 0.500 in 1k8wA # 1k8wA.505.298 read from T0547.t2k.many.frag # adding 1k8wA to template set # found chain 1k8wA in template set Warning: unaligning (T0547)E505 (1k8wA)G286 because S (epsilon) conformation "forbidden" or filtered. T0547 506 :KENYFLGF 1k8wA 287 :ENGKFIGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=49555 1xhnA expands to /projects/compbio/data/pdb/1xhn.pdb.gz 1xhnA:Skipped atom 49, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 51, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 53, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 55, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 57, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 514, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 601, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 603, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 605, because occupancy 0.500 <= existing 0.500 in 1xhnA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 689, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 691, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 693, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 695, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 697, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 786, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 788, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 790, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 792, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 794, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 796, because occupancy 0.500 <= existing 0.500 in 1xhnA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 906, because occupancy 0.500 <= existing 0.500 in 1xhnA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 908, because occupancy 0.500 <= existing 0.500 in 1xhnA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 910, because occupancy 0.500 <= existing 0.500 in 1xhnA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 912, because occupancy 0.500 <= existing 0.500 in 1xhnA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xhnA.505.146 read from T0547.t2k.many.frag # adding 1xhnA to template set # found chain 1xhnA in template set T0547 505 :EKENYFLGF 1xhnA 147 :SSHNWFFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=49556 # 1msk.506.156 read from T0547.t2k.many.frag # found chain 1msk in template set Warning: unaligning (T0547)K506 (1msk)G1053 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)F514 (1msk)F1061 because Y (epsilon') conformation "forbidden" or filtered. T0547 507 :ENYFLGF 1msk 1054 :KADYIGA Number of specific fragments extracted= 1 number of extra gaps= 2 total=49557 # 1kv7A.506.463 read from T0547.t2k.many.frag # found chain 1kv7A in training set T0547 506 :KENYFLGFF 1kv7A 492 :KEHAYMAHC Number of specific fragments extracted= 1 number of extra gaps= 0 total=49558 # 1t7lA.506.690 read from T0547.t2k.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)E507 (1t7lA)W660 because P (beta_P) conformation "forbidden" or filtered. T0547 506 :K 1t7lA 659 :G T0547 508 :NYFLGFF 1t7lA 661 :IKQIGVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=49560 # 2b5gA.506.66 read from T0547.t2k.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)E507 (2b5gA)G68 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2b5gA)H69 because P (beta_P) conformation "forbidden" or filtered. T0547 506 :K 2b5gA 67 :E T0547 509 :YFLGFF 2b5gA 70 :SIVGFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=49562 # 1gycA.506.192 read from T0547.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)G512 (1gycA)R199 because D (zeta) conformation "forbidden" or filtered. T0547 506 :KENYFL 1gycA 193 :GKRYRF T0547 513 :FF 1gycA 200 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=49564 # 1usyA.506.121 read from T0547.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)E507 (1usyA)G123 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1usyA)E128 because P (beta_P) conformation "forbidden" or filtered. T0547 506 :K 1usyA 122 :E T0547 508 :NYFL 1usyA 124 :PVIV T0547 513 :FF 1usyA 129 :IG Number of specific fragments extracted= 3 number of extra gaps= 2 total=49567 # 1w96A.506.469 read from T0547.t2k.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)F513 (1w96A)Y489 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :KENYFLG 1w96A 482 :SSSNVWG T0547 514 :F 1w96A 490 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=49569 # 1tg7A.506.750 read from T0547.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)K506 (1tg7A)G791 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1tg7A)K792 because P (beta_P) conformation "forbidden" or filtered. T0547 508 :NYFLGFF 1tg7A 793 :NYVITVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=49570 # 1wddA.506.369 read from T0547.t2k.many.frag # found chain 1wddA in training set T0547 506 :KENYFLGFF 1wddA 370 :SMPGVIPVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49571 # 1zsoA.506.98 read from T0547.t2k.many.frag # found chain 1zsoA in template set Warning: unaligning (T0547)G512 (1zsoA)A97 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :KENYFL 1zsoA 91 :NEWRDF T0547 513 :FF 1zsoA 98 :SF Number of specific fragments extracted= 2 number of extra gaps= 1 total=49573 # 2bpa2.506.136 read from T0547.t2k.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0547)N508 (2bpa2)N139 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :KE 2bpa2 137 :GN T0547 509 :YFLGFF 2bpa2 140 :VYVGFM Number of specific fragments extracted= 2 number of extra gaps= 1 total=49575 # 1d02A.506.143 read from T0547.t2k.many.frag # found chain 1d02A in training set Warning: unaligning (T0547)G512 (1d02A)V150 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :KENYFL 1d02A 144 :EILPFW T0547 513 :FF 1d02A 151 :VF Number of specific fragments extracted= 2 number of extra gaps= 1 total=49577 # 1olzA.506.283 read from T0547.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)E507 (1olzA)V285 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :K 1olzA 284 :K T0547 508 :NYFLGFF 1olzA 286 :PVFYALF Number of specific fragments extracted= 2 number of extra gaps= 1 total=49579 # 1y4wA.506.100 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)E507 (1y4wA)K121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 because of BadResidue code BAD_PEPTIDE in next template residue (1y4wA)L124 Warning: unaligning (T0547)F510 because of BadResidue code BAD_PEPTIDE at template residue (1y4wA)L124 Warning: unaligning (T0547)F514 (1y4wA)Y128 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :K 1y4wA 120 :G T0547 508 :N 1y4wA 122 :T T0547 511 :LGF 1y4wA 125 :VAM Number of specific fragments extracted= 3 number of extra gaps= 3 total=49582 # 1s3eA.506.335 read from T0547.t2k.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)E507 (1s3eA)Y337 because L (left) conformation "forbidden" or filtered. T0547 506 :K 1s3eA 336 :N T0547 508 :NYFLGFF 1s3eA 338 :AAIMGFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=49584 # 2erfA.506.87 read from T0547.t2k.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)G512 (2erfA)S100 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :KENYFL 2erfA 94 :HSGQVF T0547 513 :FF 2erfA 101 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=49586 # 1qqp3.506.68 read from T0547.t2k.many.frag # found chain 1qqp3 in template set T0547 506 :KENYFLGFF 1qqp3 69 :DSDRVLAQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=49587 # 1v71A.506.297 read from T0547.t2k.many.frag # found chain 1v71A in training set Warning: unaligning (T0547)G512 (1v71A)G304 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :KENYFL 1v71A 298 :LKNKRI T0547 513 :FF 1v71A 305 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=49589 # 1hp1A.506.453 read from T0547.t2k.many.frag # found chain 1hp1A in training set T0547 506 :KENYFLGFF 1hp1A 488 :AKTYRMATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49590 1yavA expands to /projects/compbio/data/pdb/1yav.pdb.gz 1yavA:# 1yavA.506.122 read from T0547.t2k.many.frag # adding 1yavA to template set # found chain 1yavA in template set Warning: unaligning (T0547)N508 (1yavA)Q125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1yavA)G129 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :KE 1yavA 123 :DE T0547 509 :YFL 1yavA 126 :VFE T0547 513 :FF 1yavA 130 :IF Number of specific fragments extracted= 3 number of extra gaps= 2 total=49593 # 1kjlA.506.90 read from T0547.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)K506 (1kjlA)G195 because T (delta_L) conformation "forbidden" or filtered. T0547 507 :ENYFLGFF 1kjlA 196 :KPFKIQVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=49594 # 2fokA.506.510 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)G512 (2fokA)F517 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :KENYFL 2fokA 511 :SVTEFK T0547 513 :FF 2fokA 518 :LF Number of specific fragments extracted= 2 number of extra gaps= 1 total=49596 # 1ypyA.506.139 read from T0547.t2k.many.frag # found chain 1ypyA in training set T0547 506 :KENYFLGFF 1ypyA 141 :GSPTNLEFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49597 # 1m0wA.506.275 read from T0547.t2k.many.frag # found chain 1m0wA in training set Warning: unaligning (T0547)K506 (1m0wA)E276 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1m0wA)E278 because P (beta_P) conformation "forbidden" or filtered. T0547 507 :E 1m0wA 277 :Q T0547 509 :YFLGFF 1m0wA 279 :IAVVYY Number of specific fragments extracted= 2 number of extra gaps= 2 total=49599 # 1pot.506.196 read from T0547.t2k.many.frag # found chain 1pot in training set Warning: unaligning (T0547)E507 (1pot)G221 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L511 (1pot)L225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1pot)G226 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :K 1pot 220 :E T0547 508 :NYF 1pot 222 :EVN T0547 513 :FF 1pot 227 :MI Number of specific fragments extracted= 3 number of extra gaps= 2 total=49602 # 1pgs.506.72 read from T0547.t2k.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)E507 (1pgs)E74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1pgs)G79 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :K 1pgs 73 :G T0547 508 :NYFL 1pgs 75 :WYEI T0547 513 :FF 1pgs 80 :RF Number of specific fragments extracted= 3 number of extra gaps= 2 total=49605 # 1xhnA.506.147 read from T0547.t2k.many.frag # found chain 1xhnA in template set T0547 506 :KENYFLGFF 1xhnA 148 :SHNWFFAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49606 # 1zaiA.506.291 read from T0547.t2k.many.frag # found chain 1zaiA in training set Warning: unaligning (T0547)G512 (1zaiA)T298 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :KENYFL 1zaiA 292 :LKPWAL T0547 513 :FF 1zaiA 299 :FS Number of specific fragments extracted= 2 number of extra gaps= 1 total=49608 # 1eu1A.506.631 read from T0547.t2k.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)G512 (1eu1A)H638 because P (beta_P) conformation "forbidden" or filtered. T0547 506 :KENYFL 1eu1A 632 :GAKYPL T0547 513 :FF 1eu1A 639 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=49610 # 1k8wA.506.299 read from T0547.t2k.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)N508 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :KE 1k8wA 287 :EN T0547 509 :YFL 1k8wA 290 :KFI T0547 513 :FF 1k8wA 294 :MG Number of specific fragments extracted= 3 number of extra gaps= 2 total=49613 # 1kv7A.507.464 read from T0547.t2k.many.frag # found chain 1kv7A in training set T0547 507 :ENYFLGFFL 1kv7A 493 :EHAYMAHCH Number of specific fragments extracted= 1 number of extra gaps= 0 total=49614 # 1msk.507.157 read from T0547.t2k.many.frag # found chain 1msk in template set Warning: unaligning (T0547)G512 (1msk)G1059 because E (beta_S) conformation "forbidden" or filtered. T0547 507 :ENYFL 1msk 1054 :KADYI T0547 513 :FFL 1msk 1060 :AFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=49616 # 1t7lA.507.691 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 507 :ENYFLGFFL 1t7lA 660 :WIKQIGVGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49617 # 2b5gA.507.67 read from T0547.t2k.many.frag # found chain 2b5gA in training set T0547 507 :ENYFLGFFL 2b5gA 68 :GHSIVGFAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=49618 # 1gycA.507.193 read from T0547.t2k.many.frag # found chain 1gycA in template set T0547 507 :ENYFLGFFL 1gycA 194 :KRYRFRLVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=49619 # 1w96A.507.470 read from T0547.t2k.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)E507 (1w96A)S483 because E (beta_S) conformation "forbidden" or filtered. T0547 508 :NYFLGFFL 1w96A 484 :SNVWGYFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=49620 # 2bpa2.507.137 read from T0547.t2k.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0547)E507 (2bpa2)N138 because P (beta_P) conformation "forbidden" or filtered. T0547 508 :NYFLGFFL 2bpa2 139 :NVYVGFMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=49621 # 1pot.507.197 read from T0547.t2k.many.frag # found chain 1pot in training set Warning: unaligning (T0547)N508 (1pot)E222 because G (3-10) conformation "forbidden" or filtered. T0547 507 :E 1pot 221 :G T0547 509 :YFLGFFL 1pot 223 :VNLGMIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=49623 # 1tg7A.507.751 read from T0547.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)E507 (1tg7A)K792 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1tg7A)N793 because P (beta_P) conformation "forbidden" or filtered. T0547 509 :YFLGFFL 1tg7A 794 :YVITVVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=49624 # 1wddA.507.370 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)N508 (1wddA)P372 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1wddA)P376 because P (beta_P) conformation "forbidden" or filtered. T0547 507 :E 1wddA 371 :M T0547 509 :YFL 1wddA 373 :GVI T0547 513 :FFL 1wddA 377 :VAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=49627 # 1usyA.507.122 read from T0547.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)G512 (1usyA)E128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F514 (1usyA)G130 because Y (epsilon') conformation "forbidden" or filtered. T0547 507 :ENYFL 1usyA 123 :GPVIV T0547 513 :F 1usyA 129 :I T0547 515 :L 1usyA 131 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=49630 # 1d02A.507.144 read from T0547.t2k.many.frag # found chain 1d02A in training set Warning: unaligning (T0547)N508 (1d02A)L146 because P (beta_P) conformation "forbidden" or filtered. T0547 507 :E 1d02A 145 :I T0547 509 :YFLGFFL 1d02A 147 :PFWVVFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=49632 # 1s3eA.507.336 read from T0547.t2k.many.frag # found chain 1s3eA in training set T0547 507 :ENYFLGFFL 1s3eA 337 :YAAIMGFIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49633 # 1y4wA.507.101 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)Y509 because of BadResidue code BAD_PEPTIDE in next template residue (1y4wA)L124 Warning: unaligning (T0547)F510 because of BadResidue code BAD_PEPTIDE at template residue (1y4wA)L124 Warning: unaligning (T0547)G512 (1y4wA)A126 because P (beta_P) conformation "forbidden" or filtered. T0547 507 :EN 1y4wA 121 :KT T0547 511 :L 1y4wA 125 :V T0547 513 :FFL 1y4wA 127 :MYT Number of specific fragments extracted= 3 number of extra gaps= 2 total=49636 # 1v71A.507.298 read from T0547.t2k.many.frag # found chain 1v71A in training set T0547 507 :ENYFLGFFL 1v71A 299 :KNKRIGIII Number of specific fragments extracted= 1 number of extra gaps= 0 total=49637 # 2erfA.507.88 read from T0547.t2k.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)N508 (2erfA)G96 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (2erfA)S100 because Y (epsilon') conformation "forbidden" or filtered. T0547 507 :E 2erfA 95 :S T0547 509 :YFL 2erfA 97 :QVF T0547 513 :FFL 2erfA 101 :VVS Number of specific fragments extracted= 3 number of extra gaps= 2 total=49640 # 1hp1A.507.454 read from T0547.t2k.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)G512 (1hp1A)A494 because E (beta_S) conformation "forbidden" or filtered. T0547 507 :ENYFL 1hp1A 489 :KTYRM T0547 513 :FFL 1hp1A 495 :TLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=49642 # 1olzA.507.284 read from T0547.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)G512 (1olzA)A290 because E (beta_S) conformation "forbidden" or filtered. T0547 507 :ENYFL 1olzA 285 :VPVFY T0547 513 :FFL 1olzA 291 :LFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=49644 # 1qqp3.507.69 read from T0547.t2k.many.frag # found chain 1qqp3 in template set T0547 507 :ENYFLGFFL 1qqp3 70 :SDRVLAQFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=49645 # 2fokA.507.511 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)E507 (2fokA)V512 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2fokA)T513 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (2fokA)F517 because E (beta_S) conformation "forbidden" or filtered. T0547 509 :YFL 2fokA 514 :EFK T0547 513 :FFL 2fokA 518 :LFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=49647 # 1pgs.507.73 read from T0547.t2k.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)E507 (1pgs)E74 because P (beta_P) conformation "forbidden" or filtered. T0547 508 :NYFLGFFL 1pgs 75 :WYEIGRFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=49648 # 1qf5A.507.302 read from T0547.t2k.many.frag # found chain 1qf5A in template set Warning: unaligning (T0547)L515 (1qf5A)D311 because D (zeta) conformation "forbidden" or filtered. T0547 507 :ENYFLGFF 1qf5A 303 :RRRRTGWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=49649 # 1zsoA.507.99 read from T0547.t2k.many.frag # found chain 1zsoA in template set Warning: unaligning (T0547)E507 (1zsoA)E92 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1zsoA)W93 because P (beta_P) conformation "forbidden" or filtered. T0547 509 :YFLGFFL 1zsoA 94 :RDFASFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=49650 # 1q6zA.507.418 read from T0547.t2k.many.frag # found chain 1q6zA in training set T0547 507 :ENYFLGFFL 1q6zA 419 :ERQVIAVIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49651 # 1mugA.507.99 read from T0547.t2k.many.frag # found chain 1mugA in training set Warning: unaligning (T0547)G512 (1mugA)A105 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (1mugA)G108 because Y (epsilon') conformation "forbidden" or filtered. T0547 507 :ENYFL 1mugA 100 :QPQAL T0547 513 :FF 1mugA 106 :IL Number of specific fragments extracted= 2 number of extra gaps= 2 total=49653 # 1h1nA.507.233 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)L515 (1h1nA)A242 because Y (epsilon') conformation "forbidden" or filtered. T0547 507 :ENYFLGFF 1h1nA 234 :KKGIIGEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=49654 # 1ypyA.507.140 read from T0547.t2k.many.frag # found chain 1ypyA in training set T0547 507 :ENYFLGFFL 1ypyA 142 :SPTNLEFIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=49655 # 1msk.507.158 read from T0547.t2k.many.frag # found chain 1msk in template set Warning: unaligning (T0547)N508 (1msk)D1056 because Y (epsilon') conformation "forbidden" or filtered. T0547 507 :E 1msk 1055 :A T0547 509 :YFLGFFL 1msk 1057 :YIGAFAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=49657 # 1yavA.507.123 read from T0547.t2k.many.frag # found chain 1yavA in template set T0547 507 :ENYFLGFFL 1yavA 124 :EQVFEGIFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=49658 # 1rlr.507.330 read from T0547.t2k.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)N508 because of BadResidue code BAD_PEPTIDE in next template residue (1rlr)M333 Warning: unaligning (T0547)Y509 because of BadResidue code BAD_PEPTIDE at template residue (1rlr)M333 Warning: unaligning (T0547)G512 (1rlr)G336 because D (zeta) conformation "forbidden" or filtered. T0547 507 :E 1rlr 331 :R T0547 510 :FL 1rlr 334 :DY T0547 513 :FFL 1rlr 337 :VQI Number of specific fragments extracted= 3 number of extra gaps= 2 total=49661 # 1kv7A.508.465 read from T0547.t2k.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)G512 (1kv7A)A498 because E (beta_S) conformation "forbidden" or filtered. T0547 508 :NYFL 1kv7A 494 :HAYM T0547 513 :FFLV 1kv7A 499 :HCHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=49663 # 1t7lA.508.692 read from T0547.t2k.many.frag # found chain 1t7lA in template set T0547 508 :NYFLGFFLV 1t7lA 661 :IKQIGVGVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=49664 # 1msk.508.158 read from T0547.t2k.many.frag # found chain 1msk in template set T0547 508 :NYFLGFFLV 1msk 1055 :ADYIGAFAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49665 # 1gycA.508.194 read from T0547.t2k.many.frag # found chain 1gycA in template set T0547 508 :NYFLGFFLV 1gycA 195 :RYRFRLVSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49666 # 1w96A.508.471 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 508 :NYFLGFFLV 1w96A 484 :SNVWGYFSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49667 # 1pot.508.198 read from T0547.t2k.many.frag # found chain 1pot in training set T0547 508 :NYFLGFFLV 1pot 222 :EVNLGMIWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=49668 # 2b5gA.508.68 read from T0547.t2k.many.frag # found chain 2b5gA in training set T0547 508 :NYFLGFFLV 2b5gA 69 :HSIVGFAMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=49669 # 2bpa2.508.138 read from T0547.t2k.many.frag # found chain 2bpa2 in template set T0547 508 :NYFLGFFLV 2bpa2 139 :NVYVGFMVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=49670 # 1usyA.508.123 read from T0547.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)G512 (1usyA)E128 because P (beta_P) conformation "forbidden" or filtered. T0547 508 :NYFL 1usyA 124 :PVIV T0547 513 :FFLV 1usyA 129 :IGHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=49672 # 1l1lA.508.466 read from T0547.t2k.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)Y509 (1l1lA)R468 because L (left) conformation "forbidden" or filtered. T0547 508 :N 1l1lA 467 :N T0547 510 :FLGFFLV 1l1lA 469 :RIGISMS Number of specific fragments extracted= 2 number of extra gaps= 1 total=49674 # 1hp1A.508.455 read from T0547.t2k.many.frag # found chain 1hp1A in training set T0547 508 :NYFLGFFLV 1hp1A 490 :TYRMATLNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=49675 # 1wddA.508.371 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)G512 (1wddA)P376 because P (beta_P) conformation "forbidden" or filtered. T0547 508 :NYFL 1wddA 372 :PGVI T0547 513 :FFLV 1wddA 377 :VASG Number of specific fragments extracted= 2 number of extra gaps= 1 total=49677 # 1q6zA.508.419 read from T0547.t2k.many.frag # found chain 1q6zA in training set Warning: unaligning (T0547)G512 (1q6zA)A424 because P (beta_P) conformation "forbidden" or filtered. T0547 508 :NYFL 1q6zA 420 :RQVI T0547 513 :FFLV 1q6zA 425 :VIGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=49679 # 1tg7A.508.752 read from T0547.t2k.many.frag # found chain 1tg7A in template set T0547 508 :NYFLGFFLV 1tg7A 793 :NYVITVVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=49680 # 1d02A.508.145 read from T0547.t2k.many.frag # found chain 1d02A in training set T0547 508 :NYFLGFFLV 1d02A 146 :LPFWVVFEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49681 # 1s3eA.508.337 read from T0547.t2k.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)V516 (1s3eA)A346 because S (epsilon) conformation "forbidden" or filtered. T0547 508 :NYFLGFFL 1s3eA 338 :AAIMGFIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=49682 # 1qf5A.508.303 read from T0547.t2k.many.frag # found chain 1qf5A in template set T0547 508 :NYFLGFFLV 1qf5A 304 :RRRTGWLDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=49683 # 1qqfA.508.130 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 508 :NYFLGFFLV 1qqfA 1140 :DVSLTAFVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49684 # 1olzA.508.285 read from T0547.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)N508 (1olzA)P286 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1olzA)A290 because E (beta_S) conformation "forbidden" or filtered. T0547 509 :YFL 1olzA 287 :VFY T0547 513 :FFLV 1olzA 291 :LFTP Number of specific fragments extracted= 2 number of extra gaps= 2 total=49686 # 1qqp3.508.70 read from T0547.t2k.many.frag # found chain 1qqp3 in template set T0547 508 :NYFLGFFLV 1qqp3 71 :DRVLAQFDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=49687 # 1pgs.508.74 read from T0547.t2k.many.frag # found chain 1pgs in training set T0547 508 :NYFLGFFLV 1pgs 75 :WYEIGRFIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=49688 # 1y4wA.508.102 read from T0547.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)Y509 because of BadResidue code BAD_PEPTIDE in next template residue (1y4wA)L124 Warning: unaligning (T0547)F510 because of BadResidue code BAD_PEPTIDE at template residue (1y4wA)L124 T0547 508 :N 1y4wA 122 :T T0547 511 :LGFFLV 1y4wA 125 :VAMYTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=49690 # 1mugA.508.100 read from T0547.t2k.many.frag # found chain 1mugA in training set Warning: unaligning (T0547)G512 (1mugA)A105 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (1mugA)G108 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYFL 1mugA 101 :PQAL T0547 513 :FF 1mugA 106 :IL T0547 516 :V 1mugA 109 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=49693 # 1h1nA.508.234 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)G512 (1h1nA)G239 because H (helix) conformation "forbidden" or filtered. T0547 508 :NYFL 1h1nA 235 :KGII T0547 513 :FFLV 1h1nA 240 :EFAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=49695 # 2erfA.508.89 read from T0547.t2k.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)N508 (2erfA)G96 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (2erfA)S100 because Y (epsilon') conformation "forbidden" or filtered. T0547 509 :YFL 2erfA 97 :QVF T0547 513 :FFLV 2erfA 101 :VVSN Number of specific fragments extracted= 2 number of extra gaps= 2 total=49697 # 1v04A.508.125 read from T0547.t2k.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)G512 (1v04A)L130 because E (beta_S) conformation "forbidden" or filtered. T0547 508 :NYFL 1v04A 126 :TVYL T0547 513 :FFLV 1v04A 131 :VVNH Number of specific fragments extracted= 2 number of extra gaps= 1 total=49699 # 1v71A.508.299 read from T0547.t2k.many.frag # found chain 1v71A in training set Warning: unaligning (T0547)N508 (1v71A)N300 because G (3-10) conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 1v71A 301 :KRIGIIIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=49700 # 1cl8A.508.160 read from T0547.t2k.many.frag # found chain 1cl8A in training set T0547 508 :NYFLGFFLV 1cl8A 162 :HFPYVLFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=49701 # 1ypyA.508.141 read from T0547.t2k.many.frag # found chain 1ypyA in training set Warning: unaligning (T0547)G512 (1ypyA)E147 because E (beta_S) conformation "forbidden" or filtered. T0547 508 :NYFL 1ypyA 143 :PTNL T0547 513 :FFLV 1ypyA 148 :FINT Number of specific fragments extracted= 2 number of extra gaps= 1 total=49703 2amdA expands to /projects/compbio/data/pdb/2amd.pdb.gz 2amdA:# 2amdA.508.202 read from T0547.t2k.many.frag # adding 2amdA to template set # found chain 2amdA in template set T0547 508 :NYFLGFFLV 2amdA 198 :TTITLNVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49704 # 1kv7A.509.466 read from T0547.t2k.many.frag # found chain 1kv7A in training set T0547 509 :YFLGFFLVG 1kv7A 495 :AYMAHCHLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49705 # 1usyA.509.124 read from T0547.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)G517 (1usyA)G133 because H (helix) conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 1usyA 125 :VIVEIGHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=49706 # 1t7lA.509.693 read from T0547.t2k.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)G517 (1t7lA)D670 because N (gamma') conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 1t7lA 662 :KQIGVGVW Number of specific fragments extracted= 1 number of extra gaps= 1 total=49707 # 1pot.509.199 read from T0547.t2k.many.frag # found chain 1pot in training set Warning: unaligning (T0547)G517 (1pot)G231 because H (helix) conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 1pot 223 :VNLGMIWN Number of specific fragments extracted= 1 number of extra gaps= 1 total=49708 # 1gycA.509.195 read from T0547.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)G517 (1gycA)S204 because P (beta_P) conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 1gycA 196 :YRFRLVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=49709 # 1w96A.509.472 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 509 :YFLGFFLVG 1w96A 485 :NVWGYFSVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49710 # 1l1lA.509.467 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 509 :YFLGFFLVG 1l1lA 468 :RRIGISMSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49711 # 1msk.509.159 read from T0547.t2k.many.frag # found chain 1msk in template set Warning: unaligning (T0547)F514 (1msk)F1061 because Y (epsilon') conformation "forbidden" or filtered. T0547 509 :YFLGF 1msk 1056 :DYIGA T0547 515 :LVG 1msk 1062 :AVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=49713 # 1q6zA.509.420 read from T0547.t2k.many.frag # found chain 1q6zA in training set T0547 509 :YFLGFFLVG 1q6zA 421 :QVIAVIGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49714 # 2bpa2.509.139 read from T0547.t2k.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0547)G517 (2bpa2)S148 because Y (epsilon') conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 2bpa2 140 :VYVGFMVW Number of specific fragments extracted= 1 number of extra gaps= 1 total=49715 # 1hp1A.509.456 read from T0547.t2k.many.frag # found chain 1hp1A in training set T0547 509 :YFLGFFLVG 1hp1A 491 :YRMATLNFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=49716 # 1s3eA.509.338 read from T0547.t2k.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)V516 (1s3eA)A346 because S (epsilon) conformation "forbidden" or filtered. T0547 509 :YFLGFFL 1s3eA 339 :AIMGFIL T0547 517 :G 1s3eA 347 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=49718 # 1mugA.509.101 read from T0547.t2k.many.frag # found chain 1mugA in training set Warning: unaligning (T0547)L515 (1mugA)G108 because Y (epsilon') conformation "forbidden" or filtered. T0547 509 :YFLGFF 1mugA 102 :QALAIL T0547 516 :VG 1mugA 109 :KQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=49720 # 1qqfA.509.131 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 509 :YFLGFFLVG 1qqfA 1141 :VSLTAFVLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49721 # 1qf5A.509.304 read from T0547.t2k.many.frag # found chain 1qf5A in template set T0547 509 :YFLGFFLVG 1qf5A 305 :RRTGWLDTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49722 # 1wddA.509.372 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)V516 (1wddA)G380 because L (left) conformation "forbidden" or filtered. T0547 509 :YFLGFFL 1wddA 373 :GVIPVAS T0547 517 :G 1wddA 381 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=49724 # 1olzA.509.286 read from T0547.t2k.many.frag # found chain 1olzA in template set T0547 509 :YFLGFFLVG 1olzA 287 :VFYALFTPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=49725 # 1d02A.509.146 read from T0547.t2k.many.frag # found chain 1d02A in training set T0547 509 :YFLGFFLVG 1d02A 147 :PFWVVFEGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=49726 # 2b5gA.509.69 read from T0547.t2k.many.frag # found chain 2b5gA in training set T0547 509 :YFLGFFLVG 2b5gA 70 :SIVGFAMYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=49727 # 1ypyA.509.142 read from T0547.t2k.many.frag # found chain 1ypyA in training set T0547 509 :YFLGFFLVG 1ypyA 144 :TNLEFINTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49728 # 1tg7A.509.753 read from T0547.t2k.many.frag # found chain 1tg7A in template set T0547 509 :YFLGFFLVG 1tg7A 794 :YVITVVIDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=49729 # 1svsA.509.262 read from T0547.t2k.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)L515 (1svsA)K270 because L (left) conformation "forbidden" or filtered. T0547 509 :YFLGFF 1svsA 264 :IILFLN T0547 516 :VG 1svsA 271 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=49731 # 1pgs.509.75 read from T0547.t2k.many.frag # found chain 1pgs in training set T0547 509 :YFLGFFLVG 1pgs 76 :YEIGRFITP Number of specific fragments extracted= 1 number of extra gaps= 0 total=49732 # 1h1nA.509.235 read from T0547.t2k.many.frag # found chain 1h1nA in training set T0547 509 :YFLGFFLVG 1h1nA 236 :GIIGEFAGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49733 # 2amdA.509.203 read from T0547.t2k.many.frag # found chain 2amdA in template set T0547 509 :YFLGFFLVG 2amdA 199 :TITLNVLAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=49734 # 1qqp3.509.71 read from T0547.t2k.many.frag # found chain 1qqp3 in template set Warning: unaligning (T0547)G512 (1qqp3)A75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1qqp3)S80 because E (beta_S) conformation "forbidden" or filtered. T0547 509 :YFL 1qqp3 72 :RVL T0547 513 :FFLV 1qqp3 76 :QFDM Number of specific fragments extracted= 2 number of extra gaps= 2 total=49736 # 2erfA.509.90 read from T0547.t2k.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)G512 (2erfA)S100 because Y (epsilon') conformation "forbidden" or filtered. T0547 509 :YFL 2erfA 97 :QVF T0547 513 :FFLVG 2erfA 101 :VVSNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=49738 # 1ylhA.509.373 read from T0547.t2k.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)G512 (1ylhA)V357 because E (beta_S) conformation "forbidden" or filtered. T0547 509 :YFL 1ylhA 354 :ATK T0547 513 :FFLVG 1ylhA 358 :IFLTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=49740 # 1m0wA.509.278 read from T0547.t2k.many.frag # found chain 1m0wA in training set Warning: unaligning (T0547)G512 (1m0wA)V282 because D (zeta) conformation "forbidden" or filtered. T0547 509 :YFL 1m0wA 279 :IAV T0547 513 :FFLVG 1m0wA 283 :YYRTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=49742 # 1cl8A.509.161 read from T0547.t2k.many.frag # found chain 1cl8A in training set T0547 509 :YFLGFFLVG 1cl8A 163 :FPYVLFLEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49743 # 1usyA.510.125 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 510 :FLGFFLVGA 1usyA 126 :IVEIGHTGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49744 # 1kv7A.510.467 read from T0547.t2k.many.frag # found chain 1kv7A in training set T0547 510 :FLGFFLVGA 1kv7A 496 :YMAHCHLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=49745 # 1pot.510.200 read from T0547.t2k.many.frag # found chain 1pot in training set T0547 510 :FLGFFLVGA 1pot 224 :NLGMIWNGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=49746 # 1t7lA.510.694 read from T0547.t2k.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)G517 (1t7lA)D670 because N (gamma') conformation "forbidden" or filtered. T0547 510 :FLGFFLV 1t7lA 663 :QIGVGVW T0547 518 :A 1t7lA 671 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=49748 # 1mugA.510.102 read from T0547.t2k.many.frag # found chain 1mugA in training set Warning: unaligning (T0547)L515 (1mugA)G108 because Y (epsilon') conformation "forbidden" or filtered. T0547 510 :FLGFF 1mugA 103 :ALAIL T0547 516 :VGA 1mugA 109 :KQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=49750 # 1l1lA.510.468 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 510 :FLGFFLVGA 1l1lA 469 :RIGISMSGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49751 # 1gycA.510.196 read from T0547.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)G517 (1gycA)S204 because P (beta_P) conformation "forbidden" or filtered. T0547 510 :FLGFFLV 1gycA 197 :RFRLVSI T0547 518 :A 1gycA 205 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=49753 # 1w96A.510.473 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 510 :FLGFFLVGA 1w96A 486 :VWGYFSVGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=49754 # 1q6zA.510.421 read from T0547.t2k.many.frag # found chain 1q6zA in training set Warning: unaligning (T0547)G512 (1q6zA)A424 because P (beta_P) conformation "forbidden" or filtered. T0547 510 :FL 1q6zA 422 :VI T0547 513 :FFLVGA 1q6zA 425 :VIGDGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=49756 # 1s3eA.510.339 read from T0547.t2k.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)G512 (1s3eA)G342 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V516 (1s3eA)A346 because S (epsilon) conformation "forbidden" or filtered. T0547 510 :FL 1s3eA 340 :IM T0547 513 :FFL 1s3eA 343 :FIL T0547 517 :GA 1s3eA 347 :HK Number of specific fragments extracted= 3 number of extra gaps= 2 total=49759 # 1svsA.510.263 read from T0547.t2k.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)L515 (1svsA)K270 because L (left) conformation "forbidden" or filtered. T0547 510 :FLGFF 1svsA 265 :ILFLN T0547 516 :VGA 1svsA 271 :KDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=49761 # 1ypyA.510.143 read from T0547.t2k.many.frag # found chain 1ypyA in training set T0547 510 :FLGFFLVGA 1ypyA 145 :NLEFINTGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=49762 # 1h1nA.510.236 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)L515 (1h1nA)A242 because Y (epsilon') conformation "forbidden" or filtered. T0547 510 :FLGFF 1h1nA 237 :IIGEF T0547 516 :VGA 1h1nA 243 :GGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=49764 # 1qf5A.510.305 read from T0547.t2k.many.frag # found chain 1qf5A in template set T0547 510 :FLGFFLVGA 1qf5A 306 :RTGWLDTVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49765 # 1wddA.510.373 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)G512 (1wddA)P376 because P (beta_P) conformation "forbidden" or filtered. T0547 510 :FL 1wddA 374 :VI T0547 513 :FFLVGA 1wddA 377 :VASGGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=49767 # 1qqfA.510.132 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 510 :FLGFFLVGA 1qqfA 1142 :SLTAFVLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49768 # 1hp1A.510.457 read from T0547.t2k.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)G512 (1hp1A)A494 because E (beta_S) conformation "forbidden" or filtered. T0547 510 :FL 1hp1A 492 :RM T0547 513 :FFLVGA 1hp1A 495 :TLNFNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=49770 # 1olzA.510.287 read from T0547.t2k.many.frag # found chain 1olzA in template set T0547 510 :FLGFFLVGA 1olzA 288 :FYALFTPQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49771 # 1d02A.510.147 read from T0547.t2k.many.frag # found chain 1d02A in training set T0547 510 :FLGFFLVGA 1d02A 148 :FWVVFEGDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49772 # 1msk.510.160 read from T0547.t2k.many.frag # found chain 1msk in template set Warning: unaligning (T0547)G512 (1msk)G1059 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F514 (1msk)F1061 because Y (epsilon') conformation "forbidden" or filtered. T0547 510 :FL 1msk 1057 :YI T0547 513 :F 1msk 1060 :A T0547 515 :LVGA 1msk 1062 :AVTG Number of specific fragments extracted= 3 number of extra gaps= 2 total=49775 # 1tg7A.510.754 read from T0547.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)G517 (1tg7A)N802 because E (beta_S) conformation "forbidden" or filtered. T0547 510 :FLGFFLV 1tg7A 795 :VITVVID T0547 518 :A 1tg7A 803 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=49777 # 2amdA.510.204 read from T0547.t2k.many.frag # found chain 2amdA in template set T0547 510 :FLGFFLVGA 2amdA 200 :ITLNVLAWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49778 # 1ylhA.510.374 read from T0547.t2k.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)G512 (1ylhA)V357 because E (beta_S) conformation "forbidden" or filtered. T0547 510 :FL 1ylhA 355 :TK T0547 513 :FFLVGA 1ylhA 358 :IFLTAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=49780 # 1rlr.510.333 read from T0547.t2k.many.frag # found chain 1rlr in template set T0547 510 :FLGFFLVGA 1rlr 334 :DYGVQINKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49781 # 1cl8A.510.162 read from T0547.t2k.many.frag # found chain 1cl8A in training set Warning: unaligning (T0547)G517 (1cl8A)G171 because S (epsilon) conformation "forbidden" or filtered. T0547 510 :FLGFFLV 1cl8A 164 :PYVLFLE T0547 518 :A 1cl8A 172 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=49783 # 1v71A.510.301 read from T0547.t2k.many.frag # found chain 1v71A in training set Warning: unaligning (T0547)G517 (1v71A)G309 because Y (epsilon') conformation "forbidden" or filtered. T0547 510 :FLGFFLV 1v71A 302 :RIGIIIS T0547 518 :A 1v71A 310 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=49785 # 1m0wA.510.279 read from T0547.t2k.many.frag # found chain 1m0wA in training set T0547 510 :FLGFFLVGA 1m0wA 280 :AVVYYRTGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=49786 # 2bpa2.510.140 read from T0547.t2k.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0547)G517 (2bpa2)S148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A518 (2bpa2)N149 because N (gamma') conformation "forbidden" or filtered. T0547 510 :FLGFFLV 2bpa2 141 :YVGFMVW Number of specific fragments extracted= 1 number of extra gaps= 1 total=49787 # 1vioA.510.109 read from T0547.t2k.many.frag # found chain 1vioA in training set Warning: unaligning (T0547)G512 (1vioA)L110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1vioA)G115 because H (helix) conformation "forbidden" or filtered. T0547 510 :FL 1vioA 108 :LV T0547 513 :FFLV 1vioA 111 :LTDD T0547 518 :A 1vioA 116 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=49790 # 2erfA.510.91 read from T0547.t2k.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)G512 (2erfA)S100 because Y (epsilon') conformation "forbidden" or filtered. T0547 510 :FL 2erfA 98 :VF T0547 513 :FFLVGA 2erfA 101 :VVSNGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=49792 # 1usyA.511.126 read from T0547.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)L511 (1usyA)V127 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1usyA)E128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1usyA)G133 because H (helix) conformation "forbidden" or filtered. T0547 513 :FFLV 1usyA 129 :IGHT T0547 518 :AY 1usyA 134 :VY Number of specific fragments extracted= 2 number of extra gaps= 2 total=49794 # 1mugA.511.103 read from T0547.t2k.many.frag # found chain 1mugA in training set Warning: unaligning (T0547)L515 (1mugA)G108 because Y (epsilon') conformation "forbidden" or filtered. T0547 511 :LGFF 1mugA 104 :LAIL T0547 516 :VGAY 1mugA 109 :KQAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=49796 # 1pot.511.201 read from T0547.t2k.many.frag # found chain 1pot in training set T0547 511 :LGFFLVGAY 1pot 225 :LGMIWNGSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49797 # 1l1lA.511.469 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 511 :LGFFLVGAY 1l1lA 470 :IGISMSGIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=49798 # 1svsA.511.264 read from T0547.t2k.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)G512 (1svsA)F267 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (1svsA)K270 because L (left) conformation "forbidden" or filtered. T0547 511 :L 1svsA 266 :L T0547 513 :FF 1svsA 268 :LN T0547 516 :VGAY 1svsA 271 :KDLF Number of specific fragments extracted= 3 number of extra gaps= 2 total=49801 # 1w96A.511.474 read from T0547.t2k.many.frag # found chain 1w96A in training set T0547 511 :LGFFLVGAY 1w96A 487 :WGYFSVGNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=49802 # 1kv7A.511.468 read from T0547.t2k.many.frag # found chain 1kv7A in training set T0547 511 :LGFFLVGAY 1kv7A 497 :MAHCHLLEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=49803 # 1h1nA.511.237 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)G517 (1h1nA)G244 because P (beta_P) conformation "forbidden" or filtered. T0547 511 :LGFFLV 1h1nA 238 :IGEFAG T0547 518 :AY 1h1nA 245 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=49805 # 1q6zA.511.422 read from T0547.t2k.many.frag # found chain 1q6zA in training set Warning: unaligning (T0547)G517 (1q6zA)G429 because H (helix) conformation "forbidden" or filtered. T0547 511 :LGFFLV 1q6zA 423 :IAVIGD T0547 518 :AY 1q6zA 430 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=49807 # 1ypyA.511.144 read from T0547.t2k.many.frag # found chain 1ypyA in training set Warning: unaligning (T0547)G512 (1ypyA)E147 because E (beta_S) conformation "forbidden" or filtered. T0547 511 :L 1ypyA 146 :L T0547 513 :FFLVGAY 1ypyA 148 :FINTGSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=49809 # 1t7lA.511.695 read from T0547.t2k.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)G512 (1t7lA)G665 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1t7lA)D670 because N (gamma') conformation "forbidden" or filtered. T0547 511 :L 1t7lA 664 :I T0547 513 :FFLV 1t7lA 666 :VGVW T0547 518 :AY 1t7lA 671 :IH Number of specific fragments extracted= 3 number of extra gaps= 2 total=49812 # 2amdA.511.205 read from T0547.t2k.many.frag # found chain 2amdA in template set T0547 511 :LGFFLVGAY 2amdA 201 :TLNVLAWLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=49813 # 1qqfA.511.133 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 511 :LGFFLVGAY 1qqfA 1143 :LTAFVLIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49814 # 1ujpA.511.223 read from T0547.t2k.many.frag # found chain 1ujpA in training set Warning: unaligning (T0547)L515 (1ujpA)V228 because D (zeta) conformation "forbidden" or filtered. T0547 511 :LGFF 1ujpA 224 :DGVV T0547 516 :VGAY 1ujpA 229 :GSAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=49816 # 1qf5A.511.306 read from T0547.t2k.many.frag # found chain 1qf5A in template set T0547 511 :LGFFLVGAY 1qf5A 307 :TGWLDTVAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49817 # 1s3eA.511.340 read from T0547.t2k.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)V516 (1s3eA)A346 because S (epsilon) conformation "forbidden" or filtered. T0547 511 :LGFFL 1s3eA 341 :MGFIL T0547 517 :GAY 1s3eA 347 :HKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=49819 # 1wddA.511.374 read from T0547.t2k.many.frag # found chain 1wddA in training set T0547 511 :LGFFLVGAY 1wddA 375 :IPVASGGIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=49820 # 1khxA.511.197 read from T0547.t2k.many.frag # found chain 1khxA in training set T0547 511 :LGFFLVGAY 1khxA 438 :IELHLNGPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49821 # 1gycA.511.197 read from T0547.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)G512 (1gycA)R199 because D (zeta) conformation "forbidden" or filtered. T0547 511 :L 1gycA 198 :F T0547 513 :FFLVGAY 1gycA 200 :LVSISCD Number of specific fragments extracted= 2 number of extra gaps= 1 total=49823 # 1w5qA.511.280 read from T0547.t2k.many.frag # found chain 1w5qA in training set T0547 511 :LGFFLVGAY 1w5qA 281 :FVYQVSGEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=49824 # 1vioA.511.110 read from T0547.t2k.many.frag # found chain 1vioA in training set Warning: unaligning (T0547)G512 (1vioA)L110 because P (beta_P) conformation "forbidden" or filtered. T0547 511 :L 1vioA 109 :V T0547 513 :FFLVGAY 1vioA 111 :LTDDGQW Number of specific fragments extracted= 2 number of extra gaps= 1 total=49826 # 1d02A.511.148 read from T0547.t2k.many.frag # found chain 1d02A in training set Warning: unaligning (T0547)G512 (1d02A)V150 because E (beta_S) conformation "forbidden" or filtered. T0547 511 :L 1d02A 149 :W T0547 513 :FFLVGAY 1d02A 151 :VFEGDIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=49828 # 1cnv.511.259 read from T0547.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)G512 (1cnv)G261 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V516 because of BadResidue code BAD_PEPTIDE in next template residue (1cnv)N266 Warning: unaligning (T0547)G517 because of BadResidue code BAD_PEPTIDE at template residue (1cnv)N266 T0547 511 :L 1cnv 260 :A T0547 513 :FFL 1cnv 262 :IAL T0547 518 :AY 1cnv 267 :RQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=49831 # 1ylhA.511.375 read from T0547.t2k.many.frag # found chain 1ylhA in template set T0547 511 :LGFFLVGAY 1ylhA 356 :KVIFLTADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49832 # 1w79A.511.50 read from T0547.t2k.many.frag # found chain 1w79A in training set T0547 511 :LGFFLVGAY 1w79A 51 :MKLFTAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49833 # 1zaiA.511.296 read from T0547.t2k.many.frag # found chain 1zaiA in training set Warning: unaligning (T0547)Y519 (1zaiA)L305 because G (3-10) conformation "forbidden" or filtered. T0547 511 :LGFFLVGA 1zaiA 297 :LTFSYGRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=49834 # 1cl8A.511.163 read from T0547.t2k.many.frag # found chain 1cl8A in training set Warning: unaligning (T0547)G512 (1cl8A)V166 because E (beta_S) conformation "forbidden" or filtered. T0547 511 :L 1cl8A 165 :Y T0547 513 :FFLVGAY 1cl8A 167 :LFLEGSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=49836 # 2fokA.511.515 read from T0547.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)G512 (2fokA)F517 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (2fokA)G522 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)A518 (2fokA)H523 because Y (epsilon') conformation "forbidden" or filtered. T0547 511 :L 2fokA 516 :K T0547 513 :FFLV 2fokA 518 :LFVS T0547 519 :Y 2fokA 524 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=49839 # 1rlr.511.334 read from T0547.t2k.many.frag # found chain 1rlr in template set T0547 511 :LGFFLVGAY 1rlr 335 :YGVQINKLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=49840 1bu6O expands to /projects/compbio/data/pdb/1bu6.pdb.gz 1bu6O:# 1bu6O.511.303 read from T0547.t2k.many.frag # adding 1bu6O to template set # found chain 1bu6O in template set Warning: unaligning (T0547)G517 (1bu6O)G310 because H (helix) conformation "forbidden" or filtered. T0547 511 :LGFFLV 1bu6O 304 :GAVFMA T0547 518 :AY 1bu6O 311 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=49842 # 1usyA.512.127 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 512 :GFFLVGAYQ 1usyA 128 :EIGHTGVYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=49843 # 1l1lA.512.470 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 512 :GFFLVGAYQ 1l1lA 471 :GISMSGIQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=49844 # 1mugA.512.104 read from T0547.t2k.many.frag # found chain 1mugA in training set Warning: unaligning (T0547)G512 (1mugA)A105 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (1mugA)G108 because Y (epsilon') conformation "forbidden" or filtered. T0547 513 :FF 1mugA 106 :IL T0547 516 :VGAYQ 1mugA 109 :KQAYE Number of specific fragments extracted= 2 number of extra gaps= 2 total=49846 # 1pot.512.202 read from T0547.t2k.many.frag # found chain 1pot in training set T0547 512 :GFFLVGAYQ 1pot 226 :GMIWNGSAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=49847 # 1bu6O.512.304 read from T0547.t2k.many.frag # found chain 1bu6O in template set T0547 512 :GFFLVGAYQ 1bu6O 305 :AVFMAGASI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49848 # 2amdA.512.206 read from T0547.t2k.many.frag # found chain 2amdA in template set T0547 512 :GFFLVGAYQ 2amdA 202 :LNVLAWLYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49849 # 1ujpA.512.224 read from T0547.t2k.many.frag # found chain 1ujpA in training set T0547 512 :GFFLVGAYQ 1ujpA 225 :GVVVGSALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49850 # 1qf5A.512.307 read from T0547.t2k.many.frag # found chain 1qf5A in template set Warning: unaligning (T0547)G512 (1qf5A)G308 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (1qf5A)D311 because D (zeta) conformation "forbidden" or filtered. T0547 513 :FF 1qf5A 309 :WL T0547 516 :VGAYQ 1qf5A 312 :TVAVR Number of specific fragments extracted= 2 number of extra gaps= 2 total=49852 # 1qqfA.512.134 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 512 :GFFLVGAYQ 1qqfA 1144 :TAFVLIALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=49853 # 1svsA.512.265 read from T0547.t2k.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)G512 (1svsA)F267 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (1svsA)K270 because L (left) conformation "forbidden" or filtered. T0547 513 :FF 1svsA 268 :LN T0547 516 :VGAYQ 1svsA 271 :KDLFE Number of specific fragments extracted= 2 number of extra gaps= 2 total=49855 # 1w79A.512.51 read from T0547.t2k.many.frag # found chain 1w79A in training set T0547 512 :GFFLVGAYQ 1w79A 52 :KLFTAAAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49856 # 1lam.512.356 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 512 :GFFLVGAYQ 1lam 357 :AATLTGAMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=49857 # 1khxA.512.198 read from T0547.t2k.many.frag # found chain 1khxA in training set T0547 512 :GFFLVGAYQ 1khxA 439 :ELHLNGPLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=49858 # 1kv7A.512.469 read from T0547.t2k.many.frag # found chain 1kv7A in training set T0547 512 :GFFLVGAYQ 1kv7A 498 :AHCHLLEHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=49859 # 1w5qA.512.281 read from T0547.t2k.many.frag # found chain 1w5qA in training set T0547 512 :GFFLVGAYQ 1w5qA 282 :VYQVSGEYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49860 # 1q6zA.512.423 read from T0547.t2k.many.frag # found chain 1q6zA in training set Warning: unaligning (T0547)G512 (1q6zA)A424 because P (beta_P) conformation "forbidden" or filtered. T0547 513 :FFLVGAYQ 1q6zA 425 :VIGDGSAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=49861 # 1su8A.512.562 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)G517 (1su8A)G568 because H (helix) conformation "forbidden" or filtered. T0547 512 :GFFLV 1su8A 563 :KAVAI T0547 518 :AYQ 1su8A 569 :TWA Number of specific fragments extracted= 2 number of extra gaps= 1 total=49863 # 1h1nA.512.238 read from T0547.t2k.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)G512 (1h1nA)G239 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (1h1nA)A242 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1h1nA)G244 because P (beta_P) conformation "forbidden" or filtered. T0547 513 :FF 1h1nA 240 :EF T0547 516 :V 1h1nA 243 :G T0547 518 :AYQ 1h1nA 245 :ADN Number of specific fragments extracted= 3 number of extra gaps= 3 total=49866 # 1hp1A.512.351 read from T0547.t2k.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)G512 (1hp1A)G386 because H (helix) conformation "forbidden" or filtered. T0547 513 :FFLVGAYQ 1hp1A 387 :RLILAAQM Number of specific fragments extracted= 1 number of extra gaps= 1 total=49867 # 1zkdA.512.295 read from T0547.t2k.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)F513 (1zkdA)P297 because C (cis) conformation "forbidden" or filtered. T0547 512 :G 1zkdA 296 :G T0547 514 :FLVGAYQ 1zkdA 298 :VTQGAFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=49869 # 1zaiA.512.297 read from T0547.t2k.many.frag # found chain 1zaiA in training set Warning: unaligning (T0547)G512 (1zaiA)T298 because Y (epsilon') conformation "forbidden" or filtered. T0547 513 :FFLVGAYQ 1zaiA 299 :FSYGRALQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=49870 # 1tl9A.512.162 read from T0547.t2k.many.frag # found chain 1tl9A in template set T0547 512 :GFFLVGAYQ 1tl9A 188 :SALLEKAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49871 # 1tzlA.512.314 read from T0547.t2k.many.frag # found chain 1tzlA in template set T0547 512 :GFFLVGAYQ 1tzlA 316 :YVLTAGAVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=49872 # 1ypyA.512.145 read from T0547.t2k.many.frag # found chain 1ypyA in training set T0547 512 :GFFLVGAYQ 1ypyA 147 :EFINTGSSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=49873 # 1zpdA.512.435 read from T0547.t2k.many.frag # found chain 1zpdA in template set T0547 512 :GFFLVGAYQ 1zpdA 436 :LMVGDGSFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=49874 # 1t6eX.512.344 read from T0547.t2k.many.frag # found chain 1t6eX in training set T0547 512 :GFFLVGAYQ 1t6eX 345 :AVILGGAQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=49875 # 1rlr.512.335 read from T0547.t2k.many.frag # found chain 1rlr in template set T0547 512 :GFFLVGAYQ 1rlr 336 :GVQINKLMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=49876 # 1t3tA.512.1138 read from T0547.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)L515 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t3tA)N1136 Warning: unaligning (T0547)G517 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3tA)N1136 T0547 512 :GFF 1t3tA 1131 :ALG T0547 518 :AYQ 1t3tA 1137 :GCQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=49878 # 1sz7A.512.136 read from T0547.t2k.many.frag # found chain 1sz7A in training set Warning: unaligning (T0547)G512 (1sz7A)S128 because G (3-10) conformation "forbidden" or filtered. T0547 513 :FFLVGAYQ 1sz7A 129 :NLLCGVLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=49879 # 1h54A.512.671 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 512 :GFFLVGAYQ 1h54A 672 :ITSMTGAWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49880 # 1usyA.513.128 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 513 :FFLVGAYQE 1usyA 129 :IGHTGVYED Number of specific fragments extracted= 1 number of extra gaps= 0 total=49881 # 1mugA.513.105 read from T0547.t2k.many.frag # found chain 1mugA in training set Warning: unaligning (T0547)L515 (1mugA)G108 because Y (epsilon') conformation "forbidden" or filtered. T0547 513 :FF 1mugA 106 :IL T0547 516 :VGAYQE 1mugA 109 :KQAYEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=49883 # 2amdA.513.207 read from T0547.t2k.many.frag # found chain 2amdA in template set T0547 513 :FFLVGAYQE 2amdA 203 :NVLAWLYAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49884 # 1l1lA.513.471 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 513 :FFLVGAYQE 1l1lA 472 :ISMSGIQDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=49885 # 1lam.513.357 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 513 :FFLVGAYQE 1lam 358 :ATLTGAMDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49886 # 1bu6O.513.305 read from T0547.t2k.many.frag # found chain 1bu6O in template set T0547 513 :FFLVGAYQE 1bu6O 306 :VFMAGASIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=49887 # 1w79A.513.52 read from T0547.t2k.many.frag # found chain 1w79A in training set T0547 513 :FFLVGAYQE 1w79A 53 :LFTAAAALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=49888 # 1ujpA.513.225 read from T0547.t2k.many.frag # found chain 1ujpA in training set T0547 513 :FFLVGAYQE 1ujpA 226 :VVVGSALVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=49889 # 1qqfA.513.135 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 513 :FFLVGAYQE 1qqfA 1145 :AFVLIALQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=49890 # 1pot.513.203 read from T0547.t2k.many.frag # found chain 1pot in training set T0547 513 :FFLVGAYQE 1pot 227 :MIWNGSAFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49891 # 1tl9A.513.163 read from T0547.t2k.many.frag # found chain 1tl9A in template set T0547 513 :FFLVGAYQE 1tl9A 189 :ALLEKAYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=49892 # 1su8A.513.563 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 513 :FFLVGAYQE 1su8A 564 :AVAIGTWAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49893 # 1svsA.513.266 read from T0547.t2k.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)L515 (1svsA)K270 because L (left) conformation "forbidden" or filtered. T0547 513 :FF 1svsA 268 :LN T0547 516 :VGAYQE 1svsA 271 :KDLFEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=49895 # 1qf5A.513.308 read from T0547.t2k.many.frag # found chain 1qf5A in template set T0547 513 :FFLVGAYQE 1qf5A 309 :WLDTVAVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=49896 # 1hp1A.513.352 read from T0547.t2k.many.frag # found chain 1hp1A in training set T0547 513 :FFLVGAYQE 1hp1A 387 :RLILAAQMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=49897 # 1zkdA.513.296 read from T0547.t2k.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)F513 (1zkdA)P297 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)F514 (1zkdA)V298 because Y (epsilon') conformation "forbidden" or filtered. T0547 515 :LVGAYQE 1zkdA 299 :TQGAFLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=49898 # 1tzlA.513.315 read from T0547.t2k.many.frag # found chain 1tzlA in template set T0547 513 :FFLVGAYQE 1tzlA 317 :VLTAGAVHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=49899 # 1w5qA.513.282 read from T0547.t2k.many.frag # found chain 1w5qA in training set T0547 513 :FFLVGAYQE 1w5qA 283 :YQVSGEYAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=49900 # 1h54A.513.672 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 513 :FFLVGAYQE 1h54A 673 :TSMTGAWIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49901 # 1khxA.513.199 read from T0547.t2k.many.frag # found chain 1khxA in training set T0547 513 :FFLVGAYQE 1khxA 440 :LHLNGPLQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=49902 1mkaA expands to /projects/compbio/data/pdb/1mka.pdb.gz 1mkaA:# 1mkaA.513.86 read from T0547.t2k.many.frag # adding 1mkaA to template set # found chain 1mkaA in template set T0547 513 :FFLVGAYQE 1mkaA 87 :WQLVGFYLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49903 # 1uocA.513.196 read from T0547.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)F513 (1uocA)F197 because Y (epsilon') conformation "forbidden" or filtered. T0547 514 :FLVGAYQE 1uocA 198 :YDLNLVYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=49904 # 1kv7A.513.470 read from T0547.t2k.many.frag # found chain 1kv7A in training set T0547 513 :FFLVGAYQE 1kv7A 499 :HCHLLEHED Number of specific fragments extracted= 1 number of extra gaps= 0 total=49905 # 1zpdA.513.436 read from T0547.t2k.many.frag # found chain 1zpdA in template set T0547 513 :FFLVGAYQE 1zpdA 437 :MVGDGSFQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49906 # 1zaiA.513.298 read from T0547.t2k.many.frag # found chain 1zaiA in training set T0547 513 :FFLVGAYQE 1zaiA 299 :FSYGRALQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49907 # 1t3tA.513.1139 read from T0547.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)L515 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t3tA)N1136 Warning: unaligning (T0547)G517 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3tA)N1136 T0547 513 :FF 1t3tA 1132 :LG T0547 518 :AYQE 1t3tA 1137 :GCQM Number of specific fragments extracted= 2 number of extra gaps= 0 total=49909 # 1sz7A.513.137 read from T0547.t2k.many.frag # found chain 1sz7A in training set Warning: unaligning (T0547)G517 (1sz7A)G133 because H (helix) conformation "forbidden" or filtered. T0547 513 :FFLV 1sz7A 129 :NLLC T0547 518 :AYQE 1sz7A 134 :VLRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=49911 # 1vkyA.513.320 read from T0547.t2k.many.frag # found chain 1vkyA in template set T0547 513 :FFLVGAYQE 1vkyA 309 :DFVMEAYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=49912 1vkwA expands to /projects/compbio/data/pdb/1vkw.pdb.gz 1vkwA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vkwA.513.184 read from T0547.t2k.many.frag # adding 1vkwA to template set # found chain 1vkwA in template set T0547 513 :FFLVGAYQE 1vkwA 173 :IALSHAYLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=49913 # 1su8A.513.472 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 513 :FFLVGAYQE 1su8A 473 :ATGCGAGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49914 # 1usyA.514.129 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 514 :FLVGAYQEV 1usyA 130 :GHTGVYEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49915 # 2amdA.514.208 read from T0547.t2k.many.frag # found chain 2amdA in template set T0547 514 :FLVGAYQEV 2amdA 204 :VLAWLYAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49916 # 1mugA.514.106 read from T0547.t2k.many.frag # found chain 1mugA in training set Warning: unaligning (T0547)L515 (1mugA)G108 because Y (epsilon') conformation "forbidden" or filtered. T0547 514 :F 1mugA 107 :L T0547 516 :VGAYQEV 1mugA 109 :KQAYEQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=49918 # 1l1lA.514.472 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 514 :FLVGAYQEV 1l1lA 473 :SMSGIQDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49919 # 1lam.514.358 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 514 :FLVGAYQEV 1lam 359 :TLTGAMDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49920 # 1bu6O.514.306 read from T0547.t2k.many.frag # found chain 1bu6O in template set T0547 514 :FLVGAYQEV 1bu6O 307 :FMAGASIQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=49921 # 1w79A.514.53 read from T0547.t2k.many.frag # found chain 1w79A in training set T0547 514 :FLVGAYQEV 1w79A 54 :FTAAAALEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49922 # 1tl9A.514.164 read from T0547.t2k.many.frag # found chain 1tl9A in template set T0547 514 :FLVGAYQEV 1tl9A 190 :LLEKAYAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49923 # 1su8A.514.564 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 514 :FLVGAYQEV 1su8A 565 :VAIGTWAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=49924 # 1qqfA.514.136 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 514 :FLVGAYQEV 1qqfA 1146 :FVLIALQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49925 # 1vkyA.514.321 read from T0547.t2k.many.frag # found chain 1vkyA in template set T0547 514 :FLVGAYQEV 1vkyA 310 :FVMEAYREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49926 # 1mkaA.514.87 read from T0547.t2k.many.frag # found chain 1mkaA in template set T0547 514 :FLVGAYQEV 1mkaA 88 :QLVGFYLGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=49927 # 1tzlA.514.316 read from T0547.t2k.many.frag # found chain 1tzlA in template set T0547 514 :FLVGAYQEV 1tzlA 318 :LTAGAVHNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=49928 # 1pot.514.204 read from T0547.t2k.many.frag # found chain 1pot in training set T0547 514 :FLVGAYQEV 1pot 228 :IWNGSAFVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49929 # 1h54A.514.673 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 514 :FLVGAYQEV 1h54A 674 :SMTGAWIAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49930 # 1ujpA.514.226 read from T0547.t2k.many.frag # found chain 1ujpA in training set T0547 514 :FLVGAYQEV 1ujpA 227 :VVGSALVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49931 # 1hp1A.514.353 read from T0547.t2k.many.frag # found chain 1hp1A in training set T0547 514 :FLVGAYQEV 1hp1A 388 :LILAAQMDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=49932 # 2d1eA.514.127 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 514 :FLVGAYQEV 2d1eA 128 :QLPAAYQKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=49933 # 1zkdA.514.297 read from T0547.t2k.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)F514 (1zkdA)V298 because Y (epsilon') conformation "forbidden" or filtered. T0547 515 :LVGAYQEV 1zkdA 299 :TQGAFLKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=49934 # 1w5qA.514.283 read from T0547.t2k.many.frag # found chain 1w5qA in training set T0547 514 :FLVGAYQEV 1w5qA 284 :QVSGEYAMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=49935 # 1svsA.514.267 read from T0547.t2k.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)L515 (1svsA)K270 because L (left) conformation "forbidden" or filtered. T0547 514 :F 1svsA 269 :N T0547 516 :VGAYQEV 1svsA 271 :KDLFEEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=49937 # 1qf5A.514.309 read from T0547.t2k.many.frag # found chain 1qf5A in template set T0547 514 :FLVGAYQEV 1qf5A 310 :LDTVAVRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49938 # 1uocA.514.197 read from T0547.t2k.many.frag # found chain 1uocA in template set T0547 514 :FLVGAYQEV 1uocA 198 :YDLNLVYKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49939 1tn6A expands to /projects/compbio/data/pdb/1tn6.pdb.gz 1tn6A:# 1tn6A.514.313 read from T0547.t2k.many.frag # adding 1tn6A to template set # found chain 1tn6A in template set T0547 514 :FLVGAYQEV 1tn6A 314 :FLVDIYEDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=49940 # 1sz7A.514.138 read from T0547.t2k.many.frag # found chain 1sz7A in training set T0547 514 :FLVGAYQEV 1sz7A 130 :LLCGVLRGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49941 # 1vkwA.514.185 read from T0547.t2k.many.frag # found chain 1vkwA in template set T0547 514 :FLVGAYQEV 1vkwA 174 :ALSHAYLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=49942 # 1wddA.514.384 read from T0547.t2k.many.frag # found chain 1wddA in training set T0547 514 :FLVGAYQEV 1wddA 385 :WHMPALTEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49943 # 1odmA.514.250 read from T0547.t2k.many.frag # found chain 1odmA in training set Warning: unaligning (T0547)L515 (1odmA)N252 because Y (epsilon') conformation "forbidden" or filtered. T0547 514 :F 1odmA 251 :I T0547 516 :VGAYQEV 1odmA 253 :CGSYMAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=49945 # 1hi9A.514.133 read from T0547.t2k.many.frag # found chain 1hi9A in template set T0547 514 :FLVGAYQEV 1hi9A 134 :LGLNAYVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49946 # 1t3tA.514.1140 read from T0547.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)L515 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t3tA)N1136 Warning: unaligning (T0547)G517 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3tA)N1136 T0547 514 :F 1t3tA 1133 :G T0547 518 :AYQEV 1t3tA 1137 :GCQMM Number of specific fragments extracted= 2 number of extra gaps= 0 total=49948 # 2amdA.515.209 read from T0547.t2k.many.frag # found chain 2amdA in template set T0547 515 :LVGAYQEVL 2amdA 205 :LAWLYAAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49949 # 1usyA.515.130 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 515 :LVGAYQEVL 1usyA 131 :HTGVYEDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49950 # 1bu6O.515.307 read from T0547.t2k.many.frag # found chain 1bu6O in template set T0547 515 :LVGAYQEVL 1bu6O 308 :MAGASIQWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49951 # 1mugA.515.107 read from T0547.t2k.many.frag # found chain 1mugA in training set Warning: unaligning (T0547)L515 (1mugA)G108 because Y (epsilon') conformation "forbidden" or filtered. T0547 516 :VGAYQEVL 1mugA 109 :KQAYEQGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=49952 # 1w79A.515.54 read from T0547.t2k.many.frag # found chain 1w79A in training set T0547 515 :LVGAYQEVL 1w79A 55 :TAAAALEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49953 # 1su8A.515.565 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 515 :LVGAYQEVL 1su8A 566 :AIGTWAVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49954 # 1l1lA.515.473 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 515 :LVGAYQEVL 1l1lA 474 :MSGIQDWLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49955 # 1tl9A.515.165 read from T0547.t2k.many.frag # found chain 1tl9A in template set T0547 515 :LVGAYQEVL 1tl9A 191 :LEKAYAKVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=49956 # 1lam.515.359 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 515 :LVGAYQEVL 1lam 360 :LTGAMDIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49957 # 1vkyA.515.322 read from T0547.t2k.many.frag # found chain 1vkyA in template set T0547 515 :LVGAYQEVL 1vkyA 311 :VMEAYREAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=49958 # 1mkaA.515.88 read from T0547.t2k.many.frag # found chain 1mkaA in template set T0547 515 :LVGAYQEVL 1mkaA 89 :LVGFYLGWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49959 # 1qqfA.515.137 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 515 :LVGAYQEVL 1qqfA 1147 :VLIALQEAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=49960 # 1h54A.515.674 read from T0547.t2k.many.frag # found chain 1h54A in template set Warning: unaligning (T0547)G517 (1h54A)G677 because H (helix) conformation "forbidden" or filtered. T0547 515 :LV 1h54A 675 :MT T0547 518 :AYQEVL 1h54A 678 :AWIAVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=49962 # 1hp1A.515.354 read from T0547.t2k.many.frag # found chain 1hp1A in training set T0547 515 :LVGAYQEVL 1hp1A 389 :ILAAQMDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=49963 # 2d1eA.515.128 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 515 :LVGAYQEVL 2d1eA 129 :LPAAYQKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49964 # 1tzlA.515.317 read from T0547.t2k.many.frag # found chain 1tzlA in template set T0547 515 :LVGAYQEVL 1tzlA 319 :TAGAVHNTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=49965 # 1zkdA.515.298 read from T0547.t2k.many.frag # found chain 1zkdA in template set T0547 515 :LVGAYQEVL 1zkdA 299 :TQGAFLKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49966 # 1uocA.515.198 read from T0547.t2k.many.frag # found chain 1uocA in template set T0547 515 :LVGAYQEVL 1uocA 199 :DLNLVYKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=49967 # 1pot.515.205 read from T0547.t2k.many.frag # found chain 1pot in training set T0547 515 :LVGAYQEVL 1pot 229 :WNGSAFVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=49968 # 1wddA.515.385 read from T0547.t2k.many.frag # found chain 1wddA in training set T0547 515 :LVGAYQEVL 1wddA 386 :HMPALTEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=49969 # 1t3tA.515.1141 read from T0547.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)L515 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t3tA)N1136 Warning: unaligning (T0547)G517 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3tA)N1136 T0547 518 :AYQEVL 1t3tA 1137 :GCQMMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=49970 # 1tn6A.515.314 read from T0547.t2k.many.frag # found chain 1tn6A in template set T0547 515 :LVGAYQEVL 1tn6A 315 :LVDIYEDML Number of specific fragments extracted= 1 number of extra gaps= 0 total=49971 # 1vkwA.515.186 read from T0547.t2k.many.frag # found chain 1vkwA in template set T0547 515 :LVGAYQEVL 1vkwA 175 :LSHAYLTAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=49972 # 1hi9A.515.134 read from T0547.t2k.many.frag # found chain 1hi9A in template set T0547 515 :LVGAYQEVL 1hi9A 135 :GLNAYVAGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=49973 # 1ujpA.515.227 read from T0547.t2k.many.frag # found chain 1ujpA in training set T0547 515 :LVGAYQEVL 1ujpA 228 :VGSALVRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49974 # 1sz7A.515.139 read from T0547.t2k.many.frag # found chain 1sz7A in training set T0547 515 :LVGAYQEVL 1sz7A 131 :LCGVLRGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=49975 # 1ltzA.515.132 read from T0547.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0547)G517 (1ltzA)D135 because Y (epsilon') conformation "forbidden" or filtered. T0547 515 :LV 1ltzA 133 :EP T0547 518 :AYQEVL 1ltzA 136 :VFHDLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=49977 # 1odmA.515.251 read from T0547.t2k.many.frag # found chain 1odmA in training set Warning: unaligning (T0547)L515 (1odmA)N252 because Y (epsilon') conformation "forbidden" or filtered. T0547 516 :VGAYQEVL 1odmA 253 :CGSYMAHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=49978 # 1su8A.515.474 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)G517 (1su8A)G477 because H (helix) conformation "forbidden" or filtered. T0547 515 :LV 1su8A 475 :GC T0547 518 :AYQEVL 1su8A 478 :AGALMR Number of specific fragments extracted= 2 number of extra gaps= 1 total=49980 2fbwB expands to /projects/compbio/data/pdb/2fbw.pdb.gz 2fbwB:# 2fbwB.515.183 read from T0547.t2k.many.frag # adding 2fbwB to template set # found chain 2fbwB in template set T0547 515 :LVGAYQEVL 2fbwB 184 :LMQAYRWMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=49981 # 2amdA.516.210 read from T0547.t2k.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)G524 (2amdA)N214 because G (3-10) conformation "forbidden" or filtered. T0547 516 :VGAYQEVL 2amdA 206 :AWLYAAVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=49982 # 1su8A.516.566 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 516 :VGAYQEVLG 1su8A 567 :IGTWAVTIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49983 # 1bu6O.516.308 read from T0547.t2k.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)V516 (1bu6O)A309 because Y (epsilon') conformation "forbidden" or filtered. T0547 517 :GAYQEVLG 1bu6O 310 :GASIQWLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=49984 # 1w79A.516.55 read from T0547.t2k.many.frag # found chain 1w79A in training set T0547 516 :VGAYQEVLG 1w79A 56 :AAAALEVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49985 # 1mkaA.516.89 read from T0547.t2k.many.frag # found chain 1mkaA in template set Warning: unaligning (T0547)G517 (1mkaA)G91 because H (helix) conformation "forbidden" or filtered. T0547 516 :V 1mkaA 90 :V T0547 518 :AYQEVLG 1mkaA 92 :FYLGWLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=49987 # 1mugA.516.108 read from T0547.t2k.many.frag # found chain 1mugA in training set T0547 516 :VGAYQEVLG 1mugA 109 :KQAYEQGFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=49988 # 1usyA.516.131 read from T0547.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)G517 (1usyA)G133 because H (helix) conformation "forbidden" or filtered. T0547 516 :V 1usyA 132 :T T0547 518 :AYQEVLG 1usyA 134 :VYEDLLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=49990 # 1tl9A.516.166 read from T0547.t2k.many.frag # found chain 1tl9A in template set T0547 516 :VGAYQEVLG 1tl9A 192 :EKAYAKVNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49991 # 1vkyA.516.323 read from T0547.t2k.many.frag # found chain 1vkyA in template set T0547 516 :VGAYQEVLG 1vkyA 312 :MEAYREAVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=49992 # 1lam.516.360 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 516 :VGAYQEVLG 1lam 361 :TGAMDIALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49993 # 1h54A.516.675 read from T0547.t2k.many.frag # found chain 1h54A in template set Warning: unaligning (T0547)G517 (1h54A)G677 because H (helix) conformation "forbidden" or filtered. T0547 516 :V 1h54A 676 :T T0547 518 :AYQEVLG 1h54A 678 :AWIAVVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=49995 # 1l1lA.516.474 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 516 :VGAYQEVLG 1l1lA 475 :SGIQDWLLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=49996 # 1qqfA.516.138 read from T0547.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0547)V522 (1qqfA)A1154 because G (3-10) conformation "forbidden" or filtered. T0547 516 :VGAYQE 1qqfA 1148 :LIALQE T0547 523 :LG 1qqfA 1155 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=49998 # 1ltzA.516.133 read from T0547.t2k.many.frag # found chain 1ltzA in training set T0547 516 :VGAYQEVLG 1ltzA 134 :PDVFHDLFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=49999 # 1wddA.516.386 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)G524 (1wddA)G395 because S (epsilon) conformation "forbidden" or filtered. T0547 516 :VGAYQEVL 1wddA 387 :MPALTEIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=50000 # 2d1eA.516.129 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 516 :VGAYQEVLG 2d1eA 130 :PAAYQKSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=50001 # 1hp1A.516.355 read from T0547.t2k.many.frag # found chain 1hp1A in training set T0547 516 :VGAYQEVLG 1hp1A 390 :LAAQMDRTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50002 # 1zkdA.516.299 read from T0547.t2k.many.frag # found chain 1zkdA in template set T0547 516 :VGAYQEVLG 1zkdA 300 :QGAFLKRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50003 # 1tn6A.516.315 read from T0547.t2k.many.frag # found chain 1tn6A in template set T0547 516 :VGAYQEVLG 1tn6A 316 :VDIYEDMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=50004 1jmuB expands to /projects/compbio/data/pdb/1jmu.pdb.gz 1jmuB:# 1jmuB.516.554 read from T0547.t2k.many.frag # adding 1jmuB to template set # found chain 1jmuB in template set T0547 516 :VGAYQEVLG 1jmuB 597 :SRAMQAFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50005 # 1dxrC.516.232 read from T0547.t2k.many.frag # found chain 1dxrC in template set T0547 516 :VGAYQEVLG 1dxrC 233 :MMSISDSLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50006 # 1uocA.516.199 read from T0547.t2k.many.frag # found chain 1uocA in template set T0547 516 :VGAYQEVLG 1uocA 200 :LNLVYKIIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=50007 # 1hi9A.516.135 read from T0547.t2k.many.frag # found chain 1hi9A in template set T0547 516 :VGAYQEVLG 1hi9A 136 :LNAYVAGYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=50008 # 1sz7A.516.140 read from T0547.t2k.many.frag # found chain 1sz7A in training set T0547 516 :VGAYQEVLG 1sz7A 132 :CGVLRGALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=50009 # 1t3tA.516.1142 read from T0547.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)G517 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3tA)N1136 Warning: unaligning (T0547)G524 (1t3tA)N1143 because G (3-10) conformation "forbidden" or filtered. T0547 518 :AYQEVL 1t3tA 1137 :GCQMMS Number of specific fragments extracted= 1 number of extra gaps= 1 total=50010 # 1ds1A.516.97 read from T0547.t2k.many.frag # found chain 1ds1A in training set T0547 516 :VGAYQEVLG 1ds1A 98 :LGLVGRRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50011 # 1yge.516.746 read from T0547.t2k.many.frag # found chain 1yge in training set T0547 516 :VGAYQEVLG 1yge 747 :SLSVIEILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=50012 # 2fbwB.516.184 read from T0547.t2k.many.frag # found chain 2fbwB in template set Warning: unaligning (T0547)G524 (2fbwB)D193 because P (beta_P) conformation "forbidden" or filtered. T0547 516 :VGAYQEVL 2fbwB 185 :MQAYRWMI Number of specific fragments extracted= 1 number of extra gaps= 1 total=50013 # 1svsA.516.269 read from T0547.t2k.many.frag # found chain 1svsA in training set T0547 516 :VGAYQEVLG 1svsA 271 :KDLFEEKIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=50014 # 1odmA.516.252 read from T0547.t2k.many.frag # found chain 1odmA in training set T0547 516 :VGAYQEVLG 1odmA 253 :CGSYMAHLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=50015 # 2amdA.517.211 read from T0547.t2k.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)M525 (2amdA)G215 because T (delta_L) conformation "forbidden" or filtered. T0547 517 :GAYQEVLG 2amdA 207 :WLYAAVIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=50016 # 1su8A.517.567 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 517 :GAYQEVLGM 1su8A 568 :GTWAVTIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=50017 # 1mkaA.517.90 read from T0547.t2k.many.frag # found chain 1mkaA in template set T0547 517 :GAYQEVLGM 1mkaA 91 :GFYLGWLGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50018 # 1bu6O.517.309 read from T0547.t2k.many.frag # found chain 1bu6O in template set T0547 517 :GAYQEVLGM 1bu6O 310 :GASIQWLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=50019 # 1w79A.517.56 read from T0547.t2k.many.frag # found chain 1w79A in training set T0547 517 :GAYQEVLGM 1w79A 57 :AAALEVLGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=50020 # 1vkyA.517.324 read from T0547.t2k.many.frag # found chain 1vkyA in template set T0547 517 :GAYQEVLGM 1vkyA 313 :EAYREAVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=50021 # 1lam.517.361 read from T0547.t2k.many.frag # found chain 1lam in training set Warning: unaligning (T0547)G517 (1lam)G362 because H (helix) conformation "forbidden" or filtered. T0547 518 :AYQEVLGM 1lam 363 :AMDIALGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=50022 # 1tl9A.517.167 read from T0547.t2k.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 517 :GAYQEVLG 1tl9A 193 :KAYAKVNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=50023 # 1usyA.517.132 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 517 :GAYQEVLGM 1usyA 133 :GVYEDLLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=50024 # 1mugA.517.109 read from T0547.t2k.many.frag # found chain 1mugA in training set T0547 517 :GAYQEVLGM 1mugA 110 :QAYEQGFSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=50025 # 1h54A.517.676 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 517 :GAYQEVLGM 1h54A 677 :GAWIAVVQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50026 # 1dxrC.517.233 read from T0547.t2k.many.frag # found chain 1dxrC in template set Warning: unaligning (T0547)M525 (1dxrC)T242 because Y (epsilon') conformation "forbidden" or filtered. T0547 517 :GAYQEVLG 1dxrC 234 :MSISDSLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=50027 # 1ltzA.517.134 read from T0547.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0547)G517 (1ltzA)D135 because Y (epsilon') conformation "forbidden" or filtered. T0547 518 :AYQEVLGM 1ltzA 136 :VFHDLFGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=50028 # 1jmuB.517.555 read from T0547.t2k.many.frag # found chain 1jmuB in template set T0547 517 :GAYQEVLGM 1jmuB 598 :RAMQAFIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=50029 # 1wddA.517.387 read from T0547.t2k.many.frag # found chain 1wddA in training set T0547 517 :GAYQEVLGM 1wddA 388 :PALTEIFGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=50030 # 1tn6A.517.316 read from T0547.t2k.many.frag # found chain 1tn6A in template set Warning: unaligning (T0547)M525 (1tn6A)N325 because G (3-10) conformation "forbidden" or filtered. T0547 517 :GAYQEVLG 1tn6A 317 :DIYEDMLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=50031 # 2d1eA.517.130 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 517 :GAYQEVLGM 2d1eA 131 :AAYQKSLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=50032 # 1l1lA.517.475 read from T0547.t2k.many.frag # found chain 1l1lA in training set T0547 517 :GAYQEVLGM 1l1lA 476 :GIQDWLLTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=50033 # 1uocA.517.200 read from T0547.t2k.many.frag # found chain 1uocA in template set T0547 517 :GAYQEVLGM 1uocA 201 :NLVYKIIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=50034 # 1hp1A.517.356 read from T0547.t2k.many.frag # found chain 1hp1A in training set T0547 517 :GAYQEVLGM 1hp1A 391 :AAQMDRTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=50035 # 1hi9A.517.136 read from T0547.t2k.many.frag # found chain 1hi9A in template set Warning: unaligning (T0547)G524 (1hi9A)Y144 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (1hi9A)D145 because L (left) conformation "forbidden" or filtered. T0547 517 :GAYQEVL 1hi9A 137 :NAYVAGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=50036 # 1zkdA.517.300 read from T0547.t2k.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)G517 (1zkdA)G301 because H (helix) conformation "forbidden" or filtered. T0547 518 :AYQEVLGM 1zkdA 302 :AFLKRLGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=50037 # 1qqfA.517.139 read from T0547.t2k.many.frag # found chain 1qqfA in training set T0547 517 :GAYQEVLGM 1qqfA 1149 :IALQEARDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=50038 # 1yge.517.747 read from T0547.t2k.many.frag # found chain 1yge in training set T0547 517 :GAYQEVLGM 1yge 748 :LSVIEILST Number of specific fragments extracted= 1 number of extra gaps= 0 total=50039 # 1svsA.517.270 read from T0547.t2k.many.frag # found chain 1svsA in training set T0547 517 :GAYQEVLGM 1svsA 272 :DLFEEKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=50040 # 1sz7A.517.141 read from T0547.t2k.many.frag # found chain 1sz7A in training set T0547 517 :GAYQEVLGM 1sz7A 133 :GVLRGALEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=50041 # 1t3tA.517.1143 read from T0547.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)G517 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3tA)N1136 Warning: unaligning (T0547)G524 (1t3tA)N1143 because G (3-10) conformation "forbidden" or filtered. T0547 518 :AYQEVL 1t3tA 1137 :GCQMMS T0547 525 :M 1t3tA 1144 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=50043 # 3thiA.517.312 read from T0547.t2k.many.frag # found chain 3thiA in template set T0547 517 :GAYQEVLGM 3thiA 321 :QVYEALMQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=50044 # 1dmhA.517.205 read from T0547.t2k.many.frag # found chain 1dmhA in training set T0547 517 :GAYQEVLGM 1dmhA 206 :GPTQQLLNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=50045 # 1ds1A.517.98 read from T0547.t2k.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)G517 (1ds1A)G99 because H (helix) conformation "forbidden" or filtered. T0547 518 :AYQEVLGM 1ds1A 100 :LVGRRLGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=50046 # 2amdA.518.212 read from T0547.t2k.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)G524 (2amdA)N214 because G (3-10) conformation "forbidden" or filtered. T0547 518 :AYQEVL 2amdA 208 :LYAAVI T0547 525 :MK 2amdA 215 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=50048 # 1mkaA.518.91 read from T0547.t2k.many.frag # found chain 1mkaA in template set Warning: unaligning (T0547)M525 (1mkaA)G99 because P (beta_P) conformation "forbidden" or filtered. T0547 518 :AYQEVLG 1mkaA 92 :FYLGWLG T0547 526 :K 1mkaA 100 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=50050 # 1su8A.518.568 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 518 :AYQEVLGMK 1su8A 569 :TWAVTIGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50051 # 1lam.518.362 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 518 :AYQEVLGMK 1lam 363 :AMDIALGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50052 # 1dxrC.518.234 read from T0547.t2k.many.frag # found chain 1dxrC in template set Warning: unaligning (T0547)M525 (1dxrC)T242 because Y (epsilon') conformation "forbidden" or filtered. T0547 518 :AYQEVLG 1dxrC 235 :SISDSLG T0547 526 :K 1dxrC 243 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=50054 # 1bu6O.518.310 read from T0547.t2k.many.frag # found chain 1bu6O in template set T0547 518 :AYQEVLGMK 1bu6O 311 :ASIQWLRDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=50055 # 1w79A.518.57 read from T0547.t2k.many.frag # found chain 1w79A in training set Warning: unaligning (T0547)K526 (1w79A)D66 because G (3-10) conformation "forbidden" or filtered. T0547 518 :AYQEVLGM 1w79A 58 :AALEVLGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=50056 # 1vkyA.518.325 read from T0547.t2k.many.frag # found chain 1vkyA in template set T0547 518 :AYQEVLGMK 1vkyA 314 :AYREAVKRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=50057 # 1ltzA.518.135 read from T0547.t2k.many.frag # found chain 1ltzA in training set T0547 518 :AYQEVLGMK 1ltzA 136 :VFHDLFGHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=50058 # 1jmuB.518.556 read from T0547.t2k.many.frag # found chain 1jmuB in template set T0547 518 :AYQEVLGMK 1jmuB 599 :AMQAFIGDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50059 # 1tl9A.518.168 read from T0547.t2k.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 518 :AYQEVLG 1tl9A 194 :AYAKVNG T0547 526 :K 1tl9A 202 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=50061 # 1wddA.518.388 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)G524 (1wddA)G395 because S (epsilon) conformation "forbidden" or filtered. T0547 518 :AYQEVL 1wddA 389 :ALTEIF T0547 525 :MK 1wddA 396 :DD Number of specific fragments extracted= 2 number of extra gaps= 1 total=50063 # 1h54A.518.677 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 518 :AYQEVLGMK 1h54A 678 :AWIAVVQGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=50064 # 1mugA.518.110 read from T0547.t2k.many.frag # found chain 1mugA in training set T0547 518 :AYQEVLGMK 1mugA 111 :AYEQGFSQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=50065 # 2d1eA.518.131 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 518 :AYQEVLGMK 2d1eA 132 :AYQKSLAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=50066 # 1uocA.518.201 read from T0547.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)G524 (1uocA)Q208 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (1uocA)E209 because G (3-10) conformation "forbidden" or filtered. T0547 518 :AYQEVL 1uocA 202 :LVYKII T0547 526 :K 1uocA 210 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=50068 # 1tn6A.518.317 read from T0547.t2k.many.frag # found chain 1tn6A in template set Warning: unaligning (T0547)K526 (1tn6A)Q326 because L (left) conformation "forbidden" or filtered. T0547 518 :AYQEVLGM 1tn6A 318 :IYEDMLEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=50069 1r6fA expands to /projects/compbio/data/pdb/1r6f.pdb.gz 1r6fA:# 1r6fA.518.212 read from T0547.t2k.many.frag # adding 1r6fA to template set # found chain 1r6fA in template set T0547 518 :AYQEVLGMK 1r6fA 235 :SIKDFLGSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=50070 # 1usyA.518.133 read from T0547.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)K526 (1usyA)I142 because P (beta_P) conformation "forbidden" or filtered. T0547 518 :AYQEVLGM 1usyA 134 :VYEDLLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=50071 # 2cxaA.518.189 read from T0547.t2k.many.frag # found chain 2cxaA in training set T0547 518 :AYQEVLGMK 2cxaA 173 :FCEEFIGHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50072 # 1yge.518.748 read from T0547.t2k.many.frag # found chain 1yge in training set T0547 518 :AYQEVLGMK 1yge 749 :SVIEILSTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=50073 # 1hp1A.518.357 read from T0547.t2k.many.frag # found chain 1hp1A in training set T0547 518 :AYQEVLGMK 1hp1A 392 :AQMDRTGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=50074 # 1svsA.518.271 read from T0547.t2k.many.frag # found chain 1svsA in training set T0547 518 :AYQEVLGMK 1svsA 273 :LFEEKIKKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=50075 # 1hi9A.518.137 read from T0547.t2k.many.frag # found chain 1hi9A in template set Warning: unaligning (T0547)G524 (1hi9A)Y144 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (1hi9A)D145 because L (left) conformation "forbidden" or filtered. T0547 518 :AYQEVL 1hi9A 138 :AYVAGY T0547 526 :K 1hi9A 146 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=50077 # 2cz1B.518.161 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)M525 (2cz1B)H169 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. T0547 518 :AYQEVLG 2cz1B 162 :PFPDAIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=50078 # 1d0qA.518.17 read from T0547.t2k.many.frag # found chain 1d0qA in training set T0547 518 :AYQEVLGMK 1d0qA 18 :DIVDVIGEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=50079 # 1ryoA.518.268 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)K526 (1ryoA)D277 because L (left) conformation "forbidden" or filtered. T0547 518 :AYQEVLGM 1ryoA 269 :QAQEHFGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=50080 # 1yt8A.518.448 read from T0547.t2k.many.frag # found chain 1yt8A in template set T0547 518 :AYQEVLGMK 1yt8A 449 :EVQALSGKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50081 # 1hz4A.518.259 read from T0547.t2k.many.frag # found chain 1hz4A in training set Warning: unaligning (T0547)M525 (1hz4A)G265 because T (delta_L) conformation "forbidden" or filtered. T0547 518 :AYQEVLG 1hz4A 258 :ARAQILL T0547 526 :K 1hz4A 266 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=50083 # 1zkdA.518.301 read from T0547.t2k.many.frag # found chain 1zkdA in template set T0547 518 :AYQEVLGMK 1zkdA 302 :AFLKRLGIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=50084 # 2amdA.519.213 read from T0547.t2k.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)M525 (2amdA)G215 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (2amdA)D216 because N (gamma') conformation "forbidden" or filtered. T0547 519 :YQEVLG 2amdA 209 :YAAVIN T0547 527 :H 2amdA 217 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=50086 # 1ltzA.519.136 read from T0547.t2k.many.frag # found chain 1ltzA in training set T0547 519 :YQEVLGMKH 1ltzA 137 :FHDLFGHVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50087 # 1mkaA.519.92 read from T0547.t2k.many.frag # found chain 1mkaA in template set Warning: unaligning (T0547)H527 (1mkaA)G101 because S (epsilon) conformation "forbidden" or filtered. T0547 519 :YQEVLGMK 1mkaA 93 :YLGWLGGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=50088 # 1dxrC.519.235 read from T0547.t2k.many.frag # found chain 1dxrC in template set T0547 519 :YQEVLGMKH 1dxrC 236 :ISDSLGTNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=50089 # 1su8A.519.569 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 519 :YQEVLGMKH 1su8A 570 :WAVTIGLPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=50090 # 1wddA.519.389 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)G524 (1wddA)G395 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1wddA)S398 because Y (epsilon') conformation "forbidden" or filtered. T0547 519 :YQEVL 1wddA 390 :LTEIF T0547 525 :MK 1wddA 396 :DD Number of specific fragments extracted= 2 number of extra gaps= 2 total=50092 # 1lam.519.363 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 519 :YQEVLGMKH 1lam 364 :MDIALGSGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=50093 # 1tl9A.519.169 read from T0547.t2k.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 519 :YQEVLG 1tl9A 195 :YAKVNG T0547 526 :KH 1tl9A 202 :YE Number of specific fragments extracted= 2 number of extra gaps= 1 total=50095 # 1vkyA.519.326 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)K526 (1vkyA)R322 because L (left) conformation "forbidden" or filtered. T0547 519 :YQEVLGM 1vkyA 315 :YREAVKR T0547 527 :H 1vkyA 323 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=50097 # 1jmuB.519.557 read from T0547.t2k.many.frag # found chain 1jmuB in template set T0547 519 :YQEVLGMKH 1jmuB 600 :MQAFIGDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=50098 # 1bu6O.519.311 read from T0547.t2k.many.frag # found chain 1bu6O in template set T0547 519 :YQEVLGMKH 1bu6O 312 :SIQWLRDEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=50099 # 1w79A.519.58 read from T0547.t2k.many.frag # found chain 1w79A in training set T0547 519 :YQEVLGMKH 1w79A 59 :ALEVLGADH Number of specific fragments extracted= 1 number of extra gaps= 0 total=50100 # 1r6fA.519.213 read from T0547.t2k.many.frag # found chain 1r6fA in template set Warning: unaligning (T0547)K526 (1r6fA)E243 because G (3-10) conformation "forbidden" or filtered. T0547 519 :YQEVLGM 1r6fA 236 :IKDFLGS T0547 527 :H 1r6fA 244 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=50102 # 2cz1B.519.162 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. T0547 519 :YQEVLGM 2cz1B 163 :FPDAIGH T0547 527 :H 2cz1B 171 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=50104 # 1h54A.519.678 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 519 :YQEVLGMKH 1h54A 679 :WIAVVQGFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=50105 # 1uocA.519.202 read from T0547.t2k.many.frag # found chain 1uocA in template set T0547 519 :YQEVLGMKH 1uocA 203 :VYKIIQEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=50106 # 1d0qA.519.18 read from T0547.t2k.many.frag # found chain 1d0qA in training set T0547 519 :YQEVLGMKH 1d0qA 19 :IVDVIGEYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=50107 # 2cxaA.519.190 read from T0547.t2k.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)G524 (2cxaA)G179 because H (helix) conformation "forbidden" or filtered. T0547 519 :YQEVL 2cxaA 174 :CEEFI T0547 525 :MKH 2cxaA 180 :HGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=50109 # 1x38A.519.508 read from T0547.t2k.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)G524 (1x38A)G514 because H (helix) conformation "forbidden" or filtered. T0547 519 :YQEVL 1x38A 509 :VQAVC T0547 525 :MKH 1x38A 515 :GVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=50111 # 1tn6A.519.318 read from T0547.t2k.many.frag # found chain 1tn6A in template set Warning: unaligning (T0547)K526 (1tn6A)Q326 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1tn6A)C327 because P (beta_P) conformation "forbidden" or filtered. T0547 519 :YQEVLGM 1tn6A 319 :YEDMLEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=50112 # 1yt8A.519.449 read from T0547.t2k.many.frag # found chain 1yt8A in template set T0547 519 :YQEVLGMKH 1yt8A 450 :VQALSGKPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=50113 # 1yge.519.749 read from T0547.t2k.many.frag # found chain 1yge in training set Warning: unaligning (T0547)G524 (1yge)S755 because G (3-10) conformation "forbidden" or filtered. T0547 519 :YQEVL 1yge 750 :VIEIL T0547 525 :MKH 1yge 756 :THA Number of specific fragments extracted= 2 number of extra gaps= 1 total=50115 # 2d1eA.519.132 read from T0547.t2k.many.frag # found chain 2d1eA in training set Warning: unaligning (T0547)H527 (2d1eA)G141 because S (epsilon) conformation "forbidden" or filtered. T0547 519 :YQEVLGMK 2d1eA 133 :YQKSLAEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=50116 # 1mugA.519.111 read from T0547.t2k.many.frag # found chain 1mugA in training set Warning: unaligning (T0547)H527 (1mugA)G120 because L (left) conformation "forbidden" or filtered. T0547 519 :YQEVLGMK 1mugA 112 :YEQGFSQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=50117 # 1svsA.519.272 read from T0547.t2k.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)M525 (1svsA)K280 because G (3-10) conformation "forbidden" or filtered. T0547 519 :YQEVLG 1svsA 274 :FEEKIK T0547 526 :KH 1svsA 281 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=50119 # 1rdqE.519.226 read from T0547.t2k.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)K526 (1rdqE)G234 because T (delta_L) conformation "forbidden" or filtered. T0547 519 :YQEVLGM 1rdqE 227 :LIYEMAA T0547 527 :H 1rdqE 235 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=50121 1h5uA expands to /projects/compbio/data/pdb/1h5u.pdb.gz 1h5uA:# 1h5uA.519.678 read from T0547.t2k.many.frag # adding 1h5uA to template set # found chain 1h5uA in template set Warning: unaligning (T0547)G524 (1h5uA)N684 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (1h5uA)G685 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (1h5uA)A686 because E (beta_S) conformation "forbidden" or filtered. T0547 519 :YQEVL 1h5uA 679 :MKFML T0547 527 :H 1h5uA 687 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=50123 # 1hp1A.519.358 read from T0547.t2k.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)H527 (1hp1A)F401 because Y (epsilon') conformation "forbidden" or filtered. T0547 519 :YQEVLGMK 1hp1A 393 :QMDRTGAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=50124 # 1ryoA.519.269 read from T0547.t2k.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)K526 (1ryoA)D277 because L (left) conformation "forbidden" or filtered. T0547 519 :YQEVLGM 1ryoA 270 :AQEHFGK T0547 527 :H 1ryoA 278 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=50126 # 1dmhA.519.207 read from T0547.t2k.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)K526 (1dmhA)L215 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1dmhA)G216 because L (left) conformation "forbidden" or filtered. T0547 519 :YQEVLGM 1dmhA 208 :TQQLLNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=50127 # 2amdA.520.214 read from T0547.t2k.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)M525 (2amdA)G215 because T (delta_L) conformation "forbidden" or filtered. T0547 520 :QEVLG 2amdA 210 :AAVIN T0547 526 :KHN 2amdA 216 :DRW Number of specific fragments extracted= 2 number of extra gaps= 1 total=50129 # 1ltzA.520.137 read from T0547.t2k.many.frag # found chain 1ltzA in training set T0547 520 :QEVLGMKHN 1ltzA 138 :HDLFGHVPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=50130 # 1dxrC.520.236 read from T0547.t2k.many.frag # found chain 1dxrC in template set Warning: unaligning (T0547)M525 (1dxrC)T242 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (1dxrC)N243 because E (beta_S) conformation "forbidden" or filtered. T0547 520 :QEVLG 1dxrC 237 :SDSLG T0547 527 :HN 1dxrC 244 :CT Number of specific fragments extracted= 2 number of extra gaps= 1 total=50132 # 1lam.520.364 read from T0547.t2k.many.frag # found chain 1lam in training set T0547 520 :QEVLGMKHN 1lam 365 :DIALGSGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=50133 # 2cz1B.520.163 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. T0547 520 :QEVLGM 2cz1B 164 :PDAIGH T0547 527 :HN 2cz1B 171 :RN Number of specific fragments extracted= 2 number of extra gaps= 1 total=50135 # 1vkyA.520.327 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)H527 (1vkyA)Y323 because P (beta_P) conformation "forbidden" or filtered. T0547 520 :QEVLGMK 1vkyA 316 :REAVKRR T0547 528 :N 1vkyA 324 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=50137 # 1bu6O.520.312 read from T0547.t2k.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)N528 (1bu6O)K321 because L (left) conformation "forbidden" or filtered. T0547 520 :QEVLGMKH 1bu6O 313 :IQWLRDEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=50138 # 1wddA.520.390 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)H527 (1wddA)S398 because Y (epsilon') conformation "forbidden" or filtered. T0547 520 :QEVLGMK 1wddA 391 :TEIFGDD T0547 528 :N 1wddA 399 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=50140 # 1su8A.520.570 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 520 :QEVLGMKHN 1su8A 571 :AVTIGLPTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=50141 # 1jmuB.520.558 read from T0547.t2k.many.frag # found chain 1jmuB in template set T0547 520 :QEVLGMKHN 1jmuB 601 :QAFIGDPST Number of specific fragments extracted= 1 number of extra gaps= 0 total=50142 # 1mkaA.520.93 read from T0547.t2k.many.frag # found chain 1mkaA in template set Warning: unaligning (T0547)M525 (1mkaA)G99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1mkaA)G101 because S (epsilon) conformation "forbidden" or filtered. T0547 520 :QEVLG 1mkaA 94 :LGWLG T0547 526 :K 1mkaA 100 :E T0547 528 :N 1mkaA 102 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=50145 # 1tl9A.520.170 read from T0547.t2k.many.frag # found chain 1tl9A in template set T0547 520 :QEVLGMKHN 1tl9A 196 :AKVNGSYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=50146 # 2cxaA.520.191 read from T0547.t2k.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)K526 (2cxaA)G181 because T (delta_L) conformation "forbidden" or filtered. T0547 520 :QEVLGM 2cxaA 175 :EEFIGH T0547 527 :HN 2cxaA 182 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=50148 # 1d0qA.520.19 read from T0547.t2k.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)M525 (1d0qA)E25 because G (3-10) conformation "forbidden" or filtered. T0547 520 :QEVLG 1d0qA 20 :VDVIG T0547 526 :KHN 1d0qA 26 :YVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=50150 # 1r6fA.520.214 read from T0547.t2k.many.frag # found chain 1r6fA in template set Warning: unaligning (T0547)N528 (1r6fA)K245 because Y (epsilon') conformation "forbidden" or filtered. T0547 520 :QEVLGMKH 1r6fA 237 :KDFLGSEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=50151 # 1h54A.520.679 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 520 :QEVLGMKHN 1h54A 680 :IAVVQGFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50152 # 1w79A.520.59 read from T0547.t2k.many.frag # found chain 1w79A in training set Warning: unaligning (T0547)G524 (1w79A)G64 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (1w79A)D66 because G (3-10) conformation "forbidden" or filtered. T0547 520 :QEVL 1w79A 60 :LEVL T0547 525 :M 1w79A 65 :A T0547 527 :HN 1w79A 67 :HS Number of specific fragments extracted= 3 number of extra gaps= 2 total=50155 # 1uocA.520.203 read from T0547.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)M525 (1uocA)E209 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1uocA)Q226 T0547 520 :QEVLG 1uocA 204 :YKIIQ T0547 526 :KH 1uocA 210 :FK Number of specific fragments extracted= 2 number of extra gaps= 1 total=50157 # 1x38A.520.509 read from T0547.t2k.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)G524 (1x38A)G514 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (1x38A)V516 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1x38A)R517 because P (beta_P) conformation "forbidden" or filtered. T0547 520 :QEVL 1x38A 510 :QAVC T0547 525 :M 1x38A 515 :G T0547 528 :N 1x38A 518 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=50160 # 1rdqE.520.227 read from T0547.t2k.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)K526 (1rdqE)G234 because T (delta_L) conformation "forbidden" or filtered. T0547 520 :QEVLGM 1rdqE 228 :IYEMAA T0547 527 :HN 1rdqE 235 :YP Number of specific fragments extracted= 2 number of extra gaps= 1 total=50162 # 1tn6A.520.319 read from T0547.t2k.many.frag # found chain 1tn6A in template set Warning: unaligning (T0547)K526 (1tn6A)Q326 because L (left) conformation "forbidden" or filtered. T0547 520 :QEVLGM 1tn6A 320 :EDMLEN T0547 527 :HN 1tn6A 327 :CD Number of specific fragments extracted= 2 number of extra gaps= 1 total=50164 # 1rdqE.520.228 read from T0547.t2k.many.frag # found chain 1rdqE in training set T0547 520 :QEVLGMKHN 1rdqE 229 :YEMAAGYPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50165 # 1yt8A.520.450 read from T0547.t2k.many.frag # found chain 1yt8A in template set T0547 520 :QEVLGMKHN 1yt8A 451 :QALSGKPVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=50166 # 1dmhA.520.208 read from T0547.t2k.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)H527 (1dmhA)G216 because L (left) conformation "forbidden" or filtered. T0547 520 :QEVLGMK 1dmhA 209 :QQLLNQL T0547 528 :N 1dmhA 217 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=50168 # 1yge.520.750 read from T0547.t2k.many.frag # found chain 1yge in training set T0547 520 :QEVLGMKHN 1yge 751 :IEILSTHAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=50169 # 2d1eA.520.133 read from T0547.t2k.many.frag # found chain 2d1eA in training set Warning: unaligning (T0547)H527 (2d1eA)G141 because S (epsilon) conformation "forbidden" or filtered. T0547 520 :QEVLGMK 2d1eA 134 :QKSLAEL T0547 528 :N 2d1eA 142 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=50171 # 2aqjA.520.460 read from T0547.t2k.many.frag # found chain 2aqjA in training set T0547 520 :QEVLGMKHN 2aqjA 461 :YCIFAGLGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=50172 # 1x38A.520.554 read from T0547.t2k.many.frag # found chain 1x38A in training set T0547 520 :QEVLGMKHN 1x38A 555 :DALFGDFGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=50173 # 1i24A.520.255 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 520 :QEVLGMKHN 1i24A 246 :QAAVGHPLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=50174 # 1v4aA.520.333 read from T0547.t2k.many.frag # found chain 1v4aA in template set T0547 520 :QEVLGMKHN 1v4aA 334 :QLIRGGREP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50175 # 1ltzA.521.138 read from T0547.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0547)G524 (1ltzA)G142 because H (helix) conformation "forbidden" or filtered. T0547 521 :EVL 1ltzA 139 :DLF T0547 525 :MKHNL 1ltzA 143 :HVPLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50177 # 2amdA.521.215 read from T0547.t2k.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)G524 (2amdA)N214 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVL 2amdA 211 :AVI T0547 525 :MKHNL 2amdA 215 :GDRWF Number of specific fragments extracted= 2 number of extra gaps= 1 total=50179 # 2cz1B.521.164 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)G524 (2cz1B)G168 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (2cz1B)N172 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVL 2cz1B 165 :DAI T0547 525 :M 2cz1B 169 :H T0547 527 :H 2cz1B 171 :R T0547 529 :L 2cz1B 173 :D Number of specific fragments extracted= 4 number of extra gaps= 3 total=50183 # 1vkyA.521.328 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)M525 (1vkyA)R321 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1vkyA)Y323 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1vkyA)R324 because P (beta_P) conformation "forbidden" or filtered. T0547 521 :EVLG 1vkyA 317 :EAVK T0547 526 :K 1vkyA 322 :R T0547 529 :L 1vkyA 325 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=50186 # 1su8A.521.571 read from T0547.t2k.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)N528 (1su8A)H579 because P (beta_P) conformation "forbidden" or filtered. T0547 521 :EVLGMKH 1su8A 572 :VTIGLPT T0547 529 :L 1su8A 580 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=50188 # 1d0qA.521.20 read from T0547.t2k.many.frag # found chain 1d0qA in training set T0547 521 :EVLGMKHNL 1d0qA 21 :DVIGEYVQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=50189 # 2cxaA.521.192 read from T0547.t2k.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)H527 (2cxaA)G182 because P (beta_P) conformation "forbidden" or filtered. T0547 521 :EVLGMK 2cxaA 176 :EFIGHG T0547 528 :NL 2cxaA 183 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50191 # 1tl9A.521.171 read from T0547.t2k.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 521 :EVLG 1tl9A 197 :KVNG T0547 526 :KHNL 1tl9A 202 :YEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50193 # 1jmuB.521.559 read from T0547.t2k.many.frag # found chain 1jmuB in template set Warning: unaligning (T0547)G524 (1jmuB)G605 because H (helix) conformation "forbidden" or filtered. T0547 521 :EVL 1jmuB 602 :AFI T0547 525 :MKHNL 1jmuB 606 :DPSTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=50195 # 1lam.521.365 read from T0547.t2k.many.frag # found chain 1lam in training set Warning: unaligning (T0547)H527 (1lam)A372 because Y (epsilon') conformation "forbidden" or filtered. T0547 521 :EVLGMK 1lam 366 :IALGSG T0547 528 :NL 1lam 373 :TG Number of specific fragments extracted= 2 number of extra gaps= 1 total=50197 # 1dxrC.521.237 read from T0547.t2k.many.frag # found chain 1dxrC in template set Warning: unaligning (T0547)M525 (1dxrC)T242 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1dxrC)T245 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVLG 1dxrC 238 :DSLG T0547 526 :KH 1dxrC 243 :NC T0547 529 :L 1dxrC 246 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=50200 # 2a14A.521.177 read from T0547.t2k.many.frag # found chain 2a14A in training set T0547 521 :EVLGMKHNL 2a14A 178 :AALCNLASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=50201 # 1bu6O.521.313 read from T0547.t2k.many.frag # found chain 1bu6O in template set T0547 521 :EVLGMKHNL 1bu6O 314 :QWLRDEMKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=50202 # 1wddA.521.391 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)K526 (1wddA)D397 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1wddA)S398 because Y (epsilon') conformation "forbidden" or filtered. T0547 521 :EVLGM 1wddA 392 :EIFGD T0547 528 :NL 1wddA 399 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50204 # 1x38A.521.510 read from T0547.t2k.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)K526 (1x38A)V516 because Y (epsilon') conformation "forbidden" or filtered. T0547 521 :EVLGM 1x38A 511 :AVCGG T0547 527 :HNL 1x38A 517 :RCA Number of specific fragments extracted= 2 number of extra gaps= 1 total=50206 # 1zupA.521.263 read from T0547.t2k.many.frag # found chain 1zupA in template set T0547 521 :EVLGMKHNL 1zupA 252 :DLAKTLPHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=50207 # 1rdqE.521.228 read from T0547.t2k.many.frag # found chain 1rdqE in training set T0547 521 :EVLGMKHNL 1rdqE 229 :YEMAAGYPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50208 # 1ud9A.521.198 read from T0547.t2k.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)K526 (1ud9A)I204 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVLGM 1ud9A 199 :EYLND T0547 527 :HNL 1ud9A 205 :ISL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50210 # 1mkaA.521.94 read from T0547.t2k.many.frag # found chain 1mkaA in template set Warning: unaligning (T0547)K526 (1mkaA)E100 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1mkaA)G101 because S (epsilon) conformation "forbidden" or filtered. T0547 521 :EVLGM 1mkaA 95 :GWLGG T0547 528 :NL 1mkaA 102 :KG Number of specific fragments extracted= 2 number of extra gaps= 1 total=50212 # 1w79A.521.60 read from T0547.t2k.many.frag # found chain 1w79A in training set T0547 521 :EVLGMKHNL 1w79A 61 :EVLGADHSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=50213 # 2aqjA.521.461 read from T0547.t2k.many.frag # found chain 2aqjA in training set T0547 521 :EVLGMKHNL 2aqjA 462 :CIFAGLGML Number of specific fragments extracted= 1 number of extra gaps= 0 total=50214 # 1r6fA.521.215 read from T0547.t2k.many.frag # found chain 1r6fA in template set Warning: unaligning (T0547)G524 (1r6fA)G241 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVL 1r6fA 238 :DFL T0547 525 :MKHNL 1r6fA 242 :SENKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=50216 # 1dmhA.521.209 read from T0547.t2k.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)H527 (1dmhA)G216 because L (left) conformation "forbidden" or filtered. T0547 521 :EVLGMK 1dmhA 210 :QLLNQL T0547 528 :NL 1dmhA 217 :RH Number of specific fragments extracted= 2 number of extra gaps= 1 total=50218 # 1v4aA.521.334 read from T0547.t2k.many.frag # found chain 1v4aA in template set T0547 521 :EVLGMKHNL 1v4aA 335 :LIRGGREPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=50219 # 1h54A.521.680 read from T0547.t2k.many.frag # found chain 1h54A in template set Warning: unaligning (T0547)N528 (1h54A)G688 because L (left) conformation "forbidden" or filtered. T0547 521 :EVLGMKH 1h54A 681 :AVVQGFA T0547 529 :L 1h54A 689 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=50221 # 1uocA.521.204 read from T0547.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)G524 (1uocA)Q208 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1uocA)Q226 T0547 521 :EVL 1uocA 205 :KII T0547 525 :MKH 1uocA 209 :EFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=50223 # 1qqp3.521.91 read from T0547.t2k.many.frag # found chain 1qqp3 in template set T0547 521 :EVLGMKHNL 1qqp3 92 :AGLAQYYTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=50224 # 1i24A.521.256 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 521 :EVLGMKHNL 1i24A 247 :AAVGHPLTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=50225 # 1hp1A.521.360 read from T0547.t2k.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)M525 (1hp1A)A399 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1hp1A)F401 because Y (epsilon') conformation "forbidden" or filtered. T0547 521 :EVLG 1hp1A 395 :DRTG T0547 526 :K 1hp1A 400 :D T0547 528 :NL 1hp1A 402 :AV Number of specific fragments extracted= 3 number of extra gaps= 2 total=50228 # 2ajtA.521.171 read from T0547.t2k.many.frag # found chain 2ajtA in template set Warning: unaligning (T0547)G524 (2ajtA)H175 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (2ajtA)L176 because P (beta_P) conformation "forbidden" or filtered. T0547 521 :EVL 2ajtA 172 :DTR T0547 526 :KHNL 2ajtA 177 :KVCR Number of specific fragments extracted= 2 number of extra gaps= 1 total=50230 # 1ltzA.522.139 read from T0547.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0547)G524 (1ltzA)G142 because H (helix) conformation "forbidden" or filtered. T0547 522 :VL 1ltzA 140 :LF T0547 525 :MKHNLF 1ltzA 143 :HVPLLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=50232 # 1vkyA.522.329 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)K526 (1vkyA)R322 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE in next template residue (1vkyA)S327 T0547 522 :VLGM 1vkyA 318 :AVKR T0547 527 :HNL 1vkyA 323 :YRF Number of specific fragments extracted= 2 number of extra gaps= 2 total=50234 # 2cz1B.522.165 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (2cz1B)R171 because P (beta_P) conformation "forbidden" or filtered. T0547 522 :VLGM 2cz1B 166 :AIGH T0547 528 :NLF 2cz1B 172 :NDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=50236 # 2a14A.522.178 read from T0547.t2k.many.frag # found chain 2a14A in training set T0547 522 :VLGMKHNLF 2a14A 179 :ALCNLASLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=50237 # 1zupA.522.264 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 T0547 522 :VLGMKHNL 1zupA 253 :LAKTLPHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=50238 # 2amdA.522.216 read from T0547.t2k.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)G524 (2amdA)N214 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (2amdA)G215 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (2amdA)R217 because G (3-10) conformation "forbidden" or filtered. T0547 522 :VL 2amdA 212 :VI T0547 526 :K 2amdA 216 :D T0547 528 :NLF 2amdA 218 :WFL Number of specific fragments extracted= 3 number of extra gaps= 2 total=50241 # 1bu6O.522.314 read from T0547.t2k.many.frag # found chain 1bu6O in template set T0547 522 :VLGMKHNLF 1bu6O 315 :WLRDEMKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=50242 # 1qqp3.522.92 read from T0547.t2k.many.frag # found chain 1qqp3 in template set T0547 522 :VLGMKHNLF 1qqp3 93 :GLAQYYTQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=50243 # 1d0qA.522.21 read from T0547.t2k.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)M525 (1d0qA)E25 because G (3-10) conformation "forbidden" or filtered. T0547 522 :VLG 1d0qA 22 :VIG T0547 526 :KHNLF 1d0qA 26 :YVQLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=50245 # 1tl9A.522.172 read from T0547.t2k.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 522 :VLG 1tl9A 198 :VNG T0547 526 :KHNLF 1tl9A 202 :YEALS Number of specific fragments extracted= 2 number of extra gaps= 1 total=50247 # 1jmuB.522.560 read from T0547.t2k.many.frag # found chain 1jmuB in template set T0547 522 :VLGMKHNLF 1jmuB 603 :FIGDPSTII Number of specific fragments extracted= 1 number of extra gaps= 0 total=50248 # 1su8A.522.572 read from T0547.t2k.many.frag # found chain 1su8A in training set T0547 522 :VLGMKHNLF 1su8A 573 :TIGLPTHIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50249 # 1ud9A.522.199 read from T0547.t2k.many.frag # found chain 1ud9A in training set T0547 522 :VLGMKHNLF 1ud9A 200 :YLNDIISLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=50250 # 1lam.522.366 read from T0547.t2k.many.frag # found chain 1lam in training set Warning: unaligning (T0547)H527 (1lam)A372 because Y (epsilon') conformation "forbidden" or filtered. T0547 522 :VLGMK 1lam 367 :ALGSG T0547 528 :NLF 1lam 373 :TGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=50252 # 1x38A.522.511 read from T0547.t2k.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)K526 (1x38A)V516 because Y (epsilon') conformation "forbidden" or filtered. T0547 522 :VLGM 1x38A 512 :VCGG T0547 527 :HNLF 1x38A 517 :RCAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=50254 # 2ajtA.522.172 read from T0547.t2k.many.frag # found chain 2ajtA in template set T0547 522 :VLGMKHNLF 2ajtA 173 :TRHLKVCRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=50255 # 2aqjA.522.462 read from T0547.t2k.many.frag # found chain 2aqjA in training set T0547 522 :VLGMKHNLF 2aqjA 463 :IFAGLGMLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50256 # 1v4aA.522.335 read from T0547.t2k.many.frag # found chain 1v4aA in template set Warning: unaligning (T0547)H527 (1v4aA)E341 because D (zeta) conformation "forbidden" or filtered. T0547 522 :VLGMK 1v4aA 336 :IRGGR T0547 528 :NLF 1v4aA 342 :PSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50258 # 1dxrC.522.238 read from T0547.t2k.many.frag # found chain 1dxrC in template set Warning: unaligning (T0547)K526 (1dxrC)N243 because E (beta_S) conformation "forbidden" or filtered. T0547 522 :VLGM 1dxrC 239 :SLGT T0547 527 :HNLF 1dxrC 244 :CTFC Number of specific fragments extracted= 2 number of extra gaps= 1 total=50260 # 1wddA.522.392 read from T0547.t2k.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)K526 (1wddA)D397 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1wddA)S398 because Y (epsilon') conformation "forbidden" or filtered. T0547 522 :VLGM 1wddA 393 :IFGD T0547 528 :NLF 1wddA 399 :VLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=50262 # 2cxaA.522.193 read from T0547.t2k.many.frag # found chain 2cxaA in training set T0547 522 :VLGMKHNLF 2cxaA 177 :FIGHGGKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=50263 # 1i24A.522.257 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 522 :VLGMKHNLF 1i24A 248 :AVGHPLTVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=50264 # 3sil.522.223 read from T0547.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0547)L523 (3sil)F228 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G524 because of BadResidue code BAD_PEPTIDE in next template residue (3sil)S230 Warning: unaligning (T0547)M525 because of BadResidue code BAD_PEPTIDE at template residue (3sil)S230 T0547 522 :V 3sil 227 :G T0547 526 :KHNLF 3sil 231 :ENNII Number of specific fragments extracted= 2 number of extra gaps= 1 total=50266 # 1dmhA.522.210 read from T0547.t2k.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)H527 (1dmhA)G216 because L (left) conformation "forbidden" or filtered. T0547 522 :VLGMK 1dmhA 211 :LLNQL T0547 528 :NLF 1dmhA 217 :RHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=50268 # 1rdqE.522.229 read from T0547.t2k.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)K526 (1rdqE)G234 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1rdqE)P236 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 (1rdqE)F238 because D (zeta) conformation "forbidden" or filtered. T0547 522 :VLGM 1rdqE 230 :EMAA T0547 527 :H 1rdqE 235 :Y T0547 529 :L 1rdqE 237 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=50271 # 2f2hA.522.531 read from T0547.t2k.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)K526 because of BadResidue code BAD_PEPTIDE in next template residue (2f2hA)S537 Warning: unaligning (T0547)H527 because of BadResidue code BAD_PEPTIDE at template residue (2f2hA)S537 Warning: unaligning (T0547)N528 (2f2hA)R538 because E (beta_S) conformation "forbidden" or filtered. T0547 522 :VLGM 2f2hA 532 :LLSS T0547 529 :LF 2f2hA 539 :LH Number of specific fragments extracted= 2 number of extra gaps= 1 total=50273 # 1n62A.522.92 read from T0547.t2k.many.frag # found chain 1n62A in training set Warning: unaligning (T0547)N528 (1n62A)G99 because G (3-10) conformation "forbidden" or filtered. T0547 522 :VLGMKH 1n62A 93 :GFRMMH T0547 529 :LF 1n62A 100 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=50275 1p42A expands to /projects/compbio/data/pdb/1p42.pdb.gz 1p42A:Skipped atom 81, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 83, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 85, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 87, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 89, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 91, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 533, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 535, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 537, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 539, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 541, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 543, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 545, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 547, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 549, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 551, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 553, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 957, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 959, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 961, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 963, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 965, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 967, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 969, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 971, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 973, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 975, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 977, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1454, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1456, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1458, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1460, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1462, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1464, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1466, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1468, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1470, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1472, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1474, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1549, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1551, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1553, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1555, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1557, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1559, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1561, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1563, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1565, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1594, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1596, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1598, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1600, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1602, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1604, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1606, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1608, because occupancy 0.500 <= existing 0.500 in 1p42A Skipped atom 1610, because occupancy 0.500 <= existing 0.500 in 1p42A # 1p42A.522.229 read from T0547.t2k.many.frag # adding 1p42A to template set # found chain 1p42A in template set Warning: unaligning (T0547)F530 (1p42A)G251 because T (delta_L) conformation "forbidden" or filtered. T0547 522 :VLGMKHNL 1p42A 243 :LIGDLYLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=50276 # 1tf5A.522.523 read from T0547.t2k.many.frag # found chain 1tf5A in template set T0547 522 :VLGMKHNLF 1tf5A 521 :QLRGRSGRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=50277 # 1iirA.522.318 read from T0547.t2k.many.frag # found chain 1iirA in training set T0547 522 :VLGMKHNLF 1iirA 319 :RAGAPQILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=50278 # 2a14A.523.179 read from T0547.t2k.many.frag # found chain 2a14A in training set T0547 523 :LGMKHNLFT 2a14A 180 :LCNLASLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=50279 # 1ltzA.523.140 read from T0547.t2k.many.frag # found chain 1ltzA in training set T0547 523 :LGMKHNLFT 1ltzA 141 :FGHVPLLIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=50280 # 1vkyA.523.330 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)M525 (1vkyA)R321 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (1vkyA)R322 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1vkyA)Y323 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE in next template residue (1vkyA)S327 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE at template residue (1vkyA)S327 T0547 523 :LG 1vkyA 319 :VK T0547 528 :NL 1vkyA 324 :RF Number of specific fragments extracted= 2 number of extra gaps= 2 total=50282 # 2cz1B.523.166 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. T0547 523 :LGM 2cz1B 167 :IGH T0547 527 :HNLFT 2cz1B 171 :RNDAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=50284 # 1zupA.523.265 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)A262 T0547 523 :LGMKHNL 1zupA 254 :AKTLPHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=50285 # 1ud9A.523.200 read from T0547.t2k.many.frag # found chain 1ud9A in training set T0547 523 :LGMKHNLFT 1ud9A 201 :LNDIISLTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=50286 # 1qqp3.523.93 read from T0547.t2k.many.frag # found chain 1qqp3 in template set T0547 523 :LGMKHNLFT 1qqp3 94 :LAQYYTQYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=50287 # 1bu6O.523.315 read from T0547.t2k.many.frag # found chain 1bu6O in template set T0547 523 :LGMKHNLFT 1bu6O 316 :LRDEMKLIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=50288 # 2amdA.523.217 read from T0547.t2k.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)G524 (2amdA)N214 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (2amdA)G215 because T (delta_L) conformation "forbidden" or filtered. T0547 523 :L 2amdA 213 :I T0547 526 :KHNLFT 2amdA 216 :DRWFLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=50290 # 3sil.523.224 read from T0547.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0547)G524 because of BadResidue code BAD_PEPTIDE in next template residue (3sil)S230 Warning: unaligning (T0547)M525 because of BadResidue code BAD_PEPTIDE at template residue (3sil)S230 Warning: unaligning (T0547)H527 (3sil)N232 because Y (epsilon') conformation "forbidden" or filtered. T0547 523 :L 3sil 228 :F T0547 526 :K 3sil 231 :E T0547 528 :NLFT 3sil 233 :NIIE Number of specific fragments extracted= 3 number of extra gaps= 2 total=50293 # 1d0qA.523.22 read from T0547.t2k.many.frag # found chain 1d0qA in training set T0547 523 :LGMKHNLFT 1d0qA 23 :IGEYVQLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=50294 # 1tl9A.523.173 read from T0547.t2k.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1tl9A)G207 because L (left) conformation "forbidden" or filtered. T0547 523 :LG 1tl9A 199 :NG T0547 526 :KHNLF 1tl9A 202 :YEALS Number of specific fragments extracted= 2 number of extra gaps= 2 total=50296 # 1jmuB.523.561 read from T0547.t2k.many.frag # found chain 1jmuB in template set T0547 523 :LGMKHNLFT 1jmuB 604 :IGDPSTIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=50297 # 1v8yA.523.82 read from T0547.t2k.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)N528 (1v8yA)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 523 :LGMKH 1v8yA 83 :LAEQT T0547 529 :LFT 1v8yA 89 :LSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=50299 # 1p42A.523.230 read from T0547.t2k.many.frag # found chain 1p42A in template set Warning: unaligning (T0547)G524 (1p42A)G245 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 (1p42A)G251 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1p42A)S252 because Y (epsilon') conformation "forbidden" or filtered. T0547 523 :L 1p42A 244 :I T0547 525 :MKHNL 1p42A 246 :DLYLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=50301 # 2cxaA.523.194 read from T0547.t2k.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)K526 (2cxaA)G181 because T (delta_L) conformation "forbidden" or filtered. T0547 523 :LGM 2cxaA 178 :IGH T0547 527 :HNLFT 2cxaA 182 :GKLID Number of specific fragments extracted= 2 number of extra gaps= 1 total=50303 # 2ajtA.523.173 read from T0547.t2k.many.frag # found chain 2ajtA in template set Warning: unaligning (T0547)G524 (2ajtA)H175 because G (3-10) conformation "forbidden" or filtered. T0547 523 :L 2ajtA 174 :R T0547 525 :MKHNLFT 2ajtA 176 :LKVCRFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=50305 # 2aqjA.523.463 read from T0547.t2k.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)H527 (2aqjA)G468 because T (delta_L) conformation "forbidden" or filtered. T0547 523 :LGMK 2aqjA 464 :FAGL T0547 528 :NLFT 2aqjA 469 :MLPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=50307 # 1n12A.523.115 read from T0547.t2k.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)M525 (1n12A)N129 because P (beta_P) conformation "forbidden" or filtered. T0547 523 :LG 1n12A 127 :KG T0547 526 :KHNLFT 1n12A 130 :MQNLIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=50309 # 1n62A.523.93 read from T0547.t2k.many.frag # found chain 1n62A in training set Warning: unaligning (T0547)H527 (1n62A)H98 because L (left) conformation "forbidden" or filtered. T0547 523 :LGMK 1n62A 94 :FRMM T0547 528 :NLFT 1n62A 99 :GLQC Number of specific fragments extracted= 2 number of extra gaps= 1 total=50311 1b35C expands to /projects/compbio/data/pdb/1b35.pdb.gz 1b35C:# 1b35C.523.109 read from T0547.t2k.many.frag # adding 1b35C to template set # found chain 1b35C in template set Warning: unaligning (T0547)K526 (1b35C)A113 because G (3-10) conformation "forbidden" or filtered. T0547 523 :LGM 1b35C 110 :VAN T0547 527 :HNLFT 1b35C 114 :FTYWR Number of specific fragments extracted= 2 number of extra gaps= 1 total=50313 # 2awgA.523.68 read from T0547.t2k.many.frag # found chain 2awgA in training set T0547 523 :LGMKHNLFT 2awgA 156 :LDLSVPLMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=50314 # 1v4aA.523.336 read from T0547.t2k.many.frag # found chain 1v4aA in template set Warning: unaligning (T0547)K526 (1v4aA)R340 because G (3-10) conformation "forbidden" or filtered. T0547 523 :LGM 1v4aA 337 :RGG T0547 527 :HNLFT 1v4aA 341 :EPSLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=50316 # 1n9eA.523.237 read from T0547.t2k.many.frag # found chain 1n9eA in template set Warning: unaligning (T0547)M525 (1n9eA)D240 because L (left) conformation "forbidden" or filtered. T0547 523 :LG 1n9eA 238 :EN T0547 526 :KHNLFT 1n9eA 241 :AENLVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=50318 1ouoA expands to /projects/compbio/data/pdb/1ouo.pdb.gz 1ouoA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ouoA.523.94 read from T0547.t2k.many.frag # adding 1ouoA to template set # found chain 1ouoA in template set Warning: unaligning (T0547)G524 (1ouoA)A114 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1ouoA)H117 because H (helix) conformation "forbidden" or filtered. T0547 523 :L 1ouoA 113 :E T0547 525 :MK 1ouoA 115 :DL T0547 528 :NLFT 1ouoA 118 :NLTP Number of specific fragments extracted= 3 number of extra gaps= 2 total=50321 # 1guqA.523.262 read from T0547.t2k.many.frag # found chain 1guqA in training set Warning: unaligning (T0547)T531 (1guqA)Q271 because L (left) conformation "forbidden" or filtered. T0547 523 :LGMKHNLF 1guqA 263 :TSRYDNLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=50322 # 1pgs.523.99 read from T0547.t2k.many.frag # found chain 1pgs in training set T0547 523 :LGMKHNLFT 1pgs 100 :VTDFKSLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=50323 # 1nc5A.523.221 read from T0547.t2k.many.frag # found chain 1nc5A in training set T0547 523 :LGMKHNLFT 1nc5A 222 :LADMIEELP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50324 # 1ah7.523.183 read from T0547.t2k.many.frag # found chain 1ah7 in training set T0547 523 :LGMKHNLFT 1ah7 184 :KQDYSGIVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=50325 # 1x38A.523.512 read from T0547.t2k.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)G524 (1x38A)G514 because H (helix) conformation "forbidden" or filtered. T0547 523 :L 1x38A 513 :C T0547 525 :MKHNLFT 1x38A 515 :GVRCATV Number of specific fragments extracted= 2 number of extra gaps= 1 total=50327 # 2a14A.524.180 read from T0547.t2k.many.frag # found chain 2a14A in training set T0547 524 :GMKHNLFTH 2a14A 181 :CNLASLLKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50328 # 1zupA.524.266 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)A262 T0547 524 :GMKHNL 1zupA 255 :KTLPHL T0547 532 :H 1zupA 263 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=50330 # 1vkyA.524.331 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)K526 (1vkyA)R322 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE in next template residue (1vkyA)S327 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE at template residue (1vkyA)S327 T0547 524 :GM 1vkyA 320 :KR T0547 527 :HNL 1vkyA 323 :YRF T0547 532 :H 1vkyA 328 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=50333 # 1ltzA.524.141 read from T0547.t2k.many.frag # found chain 1ltzA in training set T0547 524 :GMKHNLFTH 1ltzA 142 :GHVPLLINP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50334 # 2cz1B.524.167 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)G524 (2cz1B)G168 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (2cz1B)N172 because G (3-10) conformation "forbidden" or filtered. T0547 525 :M 2cz1B 169 :H T0547 527 :H 2cz1B 171 :R T0547 529 :LFTH 2cz1B 173 :DAGE Number of specific fragments extracted= 3 number of extra gaps= 3 total=50337 # 1ud9A.524.201 read from T0547.t2k.many.frag # found chain 1ud9A in training set T0547 524 :GMKHNLFTH 1ud9A 202 :NDIISLTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=50338 # 1v8yA.524.83 read from T0547.t2k.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)T531 (1v8yA)G91 because Y (epsilon') conformation "forbidden" or filtered. T0547 524 :GMKHNLF 1v8yA 84 :AEQTGLS T0547 532 :H 1v8yA 92 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=50340 # 3sil.524.225 read from T0547.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0547)G524 because of BadResidue code BAD_PEPTIDE in next template residue (3sil)S230 Warning: unaligning (T0547)M525 because of BadResidue code BAD_PEPTIDE at template residue (3sil)S230 Warning: unaligning (T0547)H527 (3sil)N232 because Y (epsilon') conformation "forbidden" or filtered. T0547 526 :K 3sil 231 :E T0547 528 :NLFTH 3sil 233 :NIIEF Number of specific fragments extracted= 2 number of extra gaps= 2 total=50342 # 1n9eA.524.238 read from T0547.t2k.many.frag # found chain 1n9eA in template set Warning: unaligning (T0547)G524 (1n9eA)N239 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (1n9eA)D240 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (1n9eA)A241 because G (3-10) conformation "forbidden" or filtered. T0547 527 :HNLFTH 1n9eA 242 :ENLVPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=50343 # 1pgs.524.100 read from T0547.t2k.many.frag # found chain 1pgs in training set T0547 524 :GMKHNLFTH 1pgs 101 :TDFKSLLSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50344 # 1bu6O.524.316 read from T0547.t2k.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)N528 (1bu6O)K321 because L (left) conformation "forbidden" or filtered. T0547 524 :GMKH 1bu6O 317 :RDEM T0547 529 :LFTH 1bu6O 322 :LIND Number of specific fragments extracted= 2 number of extra gaps= 1 total=50346 # 1p42A.524.231 read from T0547.t2k.many.frag # found chain 1p42A in template set Warning: unaligning (T0547)F530 (1p42A)G251 because T (delta_L) conformation "forbidden" or filtered. T0547 524 :GMKHNL 1p42A 245 :GDLYLL T0547 531 :TH 1p42A 252 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=50348 # 1lvmA.524.50 read from T0547.t2k.many.frag # found chain 1lvmA in training set T0547 524 :GMKHNLFTH 1lvmA 43 :TNKHLFRRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=50349 # 1u4bA.524.523 read from T0547.t2k.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)G524 (1u4bA)L820 because P (beta_P) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 1u4bA 821 :QAHLLLQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=50350 # 1no7A.524.445 read from T0547.t2k.many.frag # found chain 1no7A in template set T0547 524 :GMKHNLFTH 1no7A 896 :VLAHNMAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=50351 # 1qqp3.524.94 read from T0547.t2k.many.frag # found chain 1qqp3 in template set T0547 524 :GMKHNLFTH 1qqp3 95 :AQYYTQYSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50352 # 2awgA.524.69 read from T0547.t2k.many.frag # found chain 2awgA in training set T0547 524 :GMKHNLFTH 2awgA 157 :DLSVPLMDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=50353 # 1xdzA.524.157 read from T0547.t2k.many.frag # found chain 1xdzA in training set T0547 524 :GMKHNLFTH 1xdzA 157 :ELCLPLVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=50354 # 1jmuB.524.562 read from T0547.t2k.many.frag # found chain 1jmuB in template set T0547 524 :GMKHNLFTH 1jmuB 605 :GDPSTIITQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=50355 # 1n12A.524.116 read from T0547.t2k.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)N528 (1n12A)N132 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1n12A)G136 because S (epsilon) conformation "forbidden" or filtered. T0547 524 :GMKH 1n12A 128 :GNMQ T0547 529 :LFT 1n12A 133 :LIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=50357 # 1tl9A.524.174 read from T0547.t2k.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1tl9A)G207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1tl9A)G208 because Y (epsilon') conformation "forbidden" or filtered. T0547 524 :G 1tl9A 200 :G T0547 526 :KHNLF 1tl9A 202 :YEALS Number of specific fragments extracted= 2 number of extra gaps= 2 total=50359 # 1guqA.524.263 read from T0547.t2k.many.frag # found chain 1guqA in training set T0547 524 :GMKHNLFTH 1guqA 264 :SRYDNLFQC Number of specific fragments extracted= 1 number of extra gaps= 0 total=50360 1twfC expands to /projects/compbio/data/pdb/1twf.pdb.gz 1twfC:# 1twfC.524.163 read from T0547.t2k.many.frag # adding 1twfC to template set # found chain 1twfC in template set T0547 524 :GMKHNLFTH 1twfC 164 :AKEHAKWGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50361 # 1tl2A.524.87 read from T0547.t2k.many.frag # found chain 1tl2A in template set Warning: unaligning (T0547)G524 (1tl2A)N88 because G (3-10) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 1tl2A 89 :QFQFLFFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=50362 # 1tzlA.524.270 read from T0547.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)G524 (1tzlA)E272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 (1tzlA)F278 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1tzlA)A280 because L (left) conformation "forbidden" or filtered. T0547 525 :MKHNL 1tzlA 273 :ERFNL T0547 531 :T 1tzlA 279 :P Number of specific fragments extracted= 2 number of extra gaps= 3 total=50364 # 1b35C.524.110 read from T0547.t2k.many.frag # found chain 1b35C in template set T0547 524 :GMKHNLFTH 1b35C 111 :ANAFTYWRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50365 # 2amdA.524.218 read from T0547.t2k.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)G524 (2amdA)N214 because G (3-10) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 2amdA 215 :GDRWFLNR Number of specific fragments extracted= 1 number of extra gaps= 1 total=50366 # 1wtjA.524.157 read from T0547.t2k.many.frag # found chain 1wtjA in training set T0547 524 :GMKHNLFTH 1wtjA 158 :GARQPLFGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=50367 # 1ouoA.524.95 read from T0547.t2k.many.frag # found chain 1ouoA in template set T0547 524 :GMKHNLFTH 1ouoA 114 :ADLHNLTPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=50368 # 1t0tV.524.128 read from T0547.t2k.many.frag # found chain 1t0tV in training set T0547 524 :GMKHNLFTH 1t0tV 129 :RRLYPILPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=50369 # 2a14A.525.181 read from T0547.t2k.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 2a14A 182 :NLASLLKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=50370 # 1zupA.525.267 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)A262 T0547 525 :MKHNL 1zupA 256 :TLPHL T0547 532 :HP 1zupA 263 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50372 # 1vkyA.525.332 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)K526 (1vkyA)R322 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE in next template residue (1vkyA)S327 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE at template residue (1vkyA)S327 T0547 525 :M 1vkyA 321 :R T0547 527 :HNL 1vkyA 323 :YRF T0547 532 :HP 1vkyA 328 :FG Number of specific fragments extracted= 3 number of extra gaps= 2 total=50375 # 1pgs.525.101 read from T0547.t2k.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)H532 (1pgs)G109 because S (epsilon) conformation "forbidden" or filtered. T0547 525 :MKHNLFT 1pgs 102 :DFKSLLS T0547 533 :P 1pgs 110 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=50377 # 1v8yA.525.84 read from T0547.t2k.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)N528 (1v8yA)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 525 :MKH 1v8yA 85 :EQT T0547 529 :LFTHP 1v8yA 89 :LSGDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50379 # 2cz1B.525.168 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 525 :M 2cz1B 169 :H T0547 527 :HNLFTH 2cz1B 171 :RNDAGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=50381 # 1ud9A.525.202 read from T0547.t2k.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 1ud9A 203 :DIISLTKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=50382 # 1n9eA.525.239 read from T0547.t2k.many.frag # found chain 1n9eA in template set Warning: unaligning (T0547)M525 (1n9eA)D240 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1n9eA)G248 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 1n9eA 241 :AENLVPT Number of specific fragments extracted= 1 number of extra gaps= 2 total=50383 # 1lvmA.525.51 read from T0547.t2k.many.frag # found chain 1lvmA in training set Warning: unaligning (T0547)P533 (1lvmA)N52 because D (zeta) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 1lvmA 44 :NKHLFRRN Number of specific fragments extracted= 1 number of extra gaps= 1 total=50384 # 1u4bA.525.524 read from T0547.t2k.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)P533 (1u4bA)H829 because T (delta_L) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 1u4bA 821 :QAHLLLQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=50385 # 1xdzA.525.158 read from T0547.t2k.many.frag # found chain 1xdzA in training set Warning: unaligning (T0547)P533 (1xdzA)N166 because T (delta_L) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 1xdzA 158 :LCLPLVKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=50386 # 1tzlA.525.271 read from T0547.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)K526 (1tzlA)R274 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1tzlA)A280 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1tzlA)V281 because E (beta_S) conformation "forbidden" or filtered. T0547 525 :M 1tzlA 273 :E T0547 527 :HNLFT 1tzlA 275 :FNLFP Number of specific fragments extracted= 2 number of extra gaps= 2 total=50388 # 3sil.525.226 read from T0547.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0547)M525 because of BadResidue code BAD_PEPTIDE at template residue (3sil)S230 Warning: unaligning (T0547)H527 (3sil)N232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (3sil)N233 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (3sil)N238 because S (epsilon) conformation "forbidden" or filtered. T0547 526 :K 3sil 231 :E T0547 529 :LFTH 3sil 234 :IIEF Number of specific fragments extracted= 2 number of extra gaps= 3 total=50390 # 1ltzA.525.142 read from T0547.t2k.many.frag # found chain 1ltzA in training set T0547 525 :MKHNLFTHP 1ltzA 143 :HVPLLINPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=50391 # 2awgA.525.70 read from T0547.t2k.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)P533 (2awgA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 2awgA 158 :LSVPLMDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=50392 # 1n12A.525.117 read from T0547.t2k.many.frag # found chain 1n12A in template set T0547 525 :MKHNLFTHP 1n12A 129 :NMQNLIAGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50393 # 1twfC.525.164 read from T0547.t2k.many.frag # found chain 1twfC in template set T0547 525 :MKHNLFTHP 1twfC 165 :KEHAKWGPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=50394 # 1ewnA.525.65 read from T0547.t2k.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)F530 (1ewnA)F150 because G (3-10) conformation "forbidden" or filtered. T0547 525 :MKHNL 1ewnA 145 :RNRGM T0547 531 :THP 1ewnA 151 :MKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=50396 # 1guqA.525.264 read from T0547.t2k.many.frag # found chain 1guqA in training set Warning: unaligning (T0547)T531 (1guqA)Q271 because L (left) conformation "forbidden" or filtered. T0547 525 :MKHNLF 1guqA 265 :RYDNLF T0547 532 :HP 1guqA 272 :CS Number of specific fragments extracted= 2 number of extra gaps= 1 total=50398 # 1p42A.525.232 read from T0547.t2k.many.frag # found chain 1p42A in template set Warning: unaligning (T0547)P533 (1p42A)V254 because E (beta_S) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 1p42A 246 :DLYLLGSP Number of specific fragments extracted= 1 number of extra gaps= 1 total=50399 # 1no7A.525.446 read from T0547.t2k.many.frag # found chain 1no7A in template set T0547 525 :MKHNLFTHP 1no7A 897 :LAHNMAERT Number of specific fragments extracted= 1 number of extra gaps= 0 total=50400 # 1kuuA.525.173 read from T0547.t2k.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)M525 (1kuuA)G174 because S (epsilon) conformation "forbidden" or filtered. T0547 526 :KHNLFTHP 1kuuA 175 :EFAAFTHP Number of specific fragments extracted= 1 number of extra gaps= 1 total=50401 # 1bu6O.525.317 read from T0547.t2k.many.frag # found chain 1bu6O in template set T0547 525 :MKHNLFTHP 1bu6O 318 :DEMKLINDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=50402 # 1eerB.525.116 read from T0547.t2k.many.frag # found chain 1eerB in template set T0547 525 :MKHNLFTHP 1eerB 116 :NEVVLLDAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50403 # 1t0tV.525.129 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)H527 (1t0tV)Y132 because D (zeta) conformation "forbidden" or filtered. T0547 525 :MK 1t0tV 130 :RL T0547 528 :NLFTHP 1t0tV 133 :PILPKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=50405 # 1tl2A.525.88 read from T0547.t2k.many.frag # found chain 1tl2A in template set T0547 525 :MKHNLFTHP 1tl2A 89 :QFQFLFFDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50406 # 1iuqA.525.275 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)P533 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iuqA)R296 T0547 525 :MKHNLFTH 1iuqA 277 :LCHDIMPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50407 # 1wtjA.525.158 read from T0547.t2k.many.frag # found chain 1wtjA in training set Warning: unaligning (T0547)P533 (1wtjA)N167 because L (left) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 1wtjA 159 :ARQPLFGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=50408 # 1tl9A.525.175 read from T0547.t2k.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1tl9A)G207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1tl9A)G208 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1tl9A)C209 because E (beta_S) conformation "forbidden" or filtered. T0547 526 :KHNLF 1tl9A 202 :YEALS Number of specific fragments extracted= 1 number of extra gaps= 2 total=50409 # 1qqp3.525.95 read from T0547.t2k.many.frag # found chain 1qqp3 in template set Warning: unaligning (T0547)T531 (1qqp3)S102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1qqp3)G103 because S (epsilon) conformation "forbidden" or filtered. T0547 525 :MKHNLF 1qqp3 96 :QYYTQY T0547 533 :P 1qqp3 104 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=50411 # 2a14A.526.182 read from T0547.t2k.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 2a14A 183 :LASLLKP T0547 534 :T 2a14A 191 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=50413 # 1zupA.526.268 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)A262 Warning: unaligning (T0547)T534 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)N272 T0547 526 :KHNL 1zupA 257 :LPHL T0547 532 :HP 1zupA 263 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50415 # 1pgs.526.102 read from T0547.t2k.many.frag # found chain 1pgs in training set T0547 526 :KHNLFTHPT 1pgs 103 :FKSLLSGNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=50416 # 1u4bA.526.525 read from T0547.t2k.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)P533 (1u4bA)H829 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 1u4bA 822 :AHLLLQV T0547 534 :T 1u4bA 830 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=50418 # 1lvmA.526.52 read from T0547.t2k.many.frag # found chain 1lvmA in training set Warning: unaligning (T0547)H532 (1lvmA)N51 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1lvmA)N52 because D (zeta) conformation "forbidden" or filtered. T0547 526 :KHNLFT 1lvmA 45 :KHLFRR T0547 534 :T 1lvmA 53 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=50420 # 2cz1B.526.169 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (2cz1B)R171 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (2cz1B)G175 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLF 2cz1B 172 :NDA T0547 532 :H 2cz1B 176 :E T0547 534 :T 2cz1B 178 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=50423 # 1eerB.526.117 read from T0547.t2k.many.frag # found chain 1eerB in template set Warning: unaligning (T0547)T534 (1eerB)V125 because Y (epsilon') conformation "forbidden" or filtered. T0547 526 :KHNLFTHP 1eerB 117 :EVVLLDAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=50424 # 1vkyA.526.333 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)N528 (1vkyA)R324 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE in next template residue (1vkyA)S327 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE at template residue (1vkyA)S327 T0547 526 :KH 1vkyA 322 :RY T0547 529 :L 1vkyA 325 :F T0547 532 :HPT 1vkyA 328 :FGD Number of specific fragments extracted= 3 number of extra gaps= 2 total=50427 # 1ud9A.526.203 read from T0547.t2k.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 526 :KHNLFTH 1ud9A 204 :IISLTKL T0547 534 :T 1ud9A 212 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=50429 # 1ewnA.526.66 read from T0547.t2k.many.frag # found chain 1ewnA in template set T0547 526 :KHNLFTHPT 1ewnA 146 :NRGMFMKPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50430 # 1twfC.526.165 read from T0547.t2k.many.frag # found chain 1twfC in template set T0547 526 :KHNLFTHPT 1twfC 166 :EHAKWGPAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=50431 # 1tzlA.526.272 read from T0547.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)P533 (1tzlA)V281 because E (beta_S) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 1tzlA 274 :RFNLFPA T0547 534 :T 1tzlA 282 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=50433 # 1kuuA.526.174 read from T0547.t2k.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)H532 (1kuuA)H181 because L (left) conformation "forbidden" or filtered. T0547 526 :KHNLFT 1kuuA 175 :EFAAFT T0547 533 :PT 1kuuA 182 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=50435 # 1xdzA.526.159 read from T0547.t2k.many.frag # found chain 1xdzA in training set Warning: unaligning (T0547)P533 (1xdzA)N166 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 1xdzA 159 :CLPLVKK T0547 534 :T 1xdzA 167 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=50437 # 1v8yA.526.85 read from T0547.t2k.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)H527 (1v8yA)T87 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1v8yA)G88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1v8yA)D92 because P (beta_P) conformation "forbidden" or filtered. T0547 526 :K 1v8yA 86 :Q T0547 529 :LFT 1v8yA 89 :LSG T0547 533 :PT 1v8yA 93 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=50440 # 1n9eA.526.240 read from T0547.t2k.many.frag # found chain 1n9eA in template set Warning: unaligning (T0547)P533 (1n9eA)G248 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 1n9eA 241 :AENLVPT T0547 534 :T 1n9eA 249 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=50442 # 1t0tV.526.130 read from T0547.t2k.many.frag # found chain 1t0tV in training set T0547 526 :KHNLFTHPT 1t0tV 131 :LYPILPKTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=50443 # 1xszA.526.285 read from T0547.t2k.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)T531 (1xszA)G289 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1xszA)Q291 because E (beta_S) conformation "forbidden" or filtered. T0547 526 :KHNLF 1xszA 284 :SKWLF T0547 532 :H 1xszA 290 :E T0547 534 :T 1xszA 292 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=50446 # 3sil.526.227 read from T0547.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0547)K526 (3sil)E231 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (3sil)N232 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLFTHPT 3sil 233 :NIIEFNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=50447 # 1no7A.526.447 read from T0547.t2k.many.frag # found chain 1no7A in template set T0547 526 :KHNLFTHPT 1no7A 898 :AHNMAERTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=50448 # 1tl2A.526.89 read from T0547.t2k.many.frag # found chain 1tl2A in template set T0547 526 :KHNLFTHPT 1tl2A 90 :FQFLFFDPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=50449 # 2awgA.526.71 read from T0547.t2k.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)P533 (2awgA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 2awgA 159 :SVPLMDV T0547 534 :T 2awgA 167 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=50451 # 1guqA.526.265 read from T0547.t2k.many.frag # found chain 1guqA in training set Warning: unaligning (T0547)H532 (1guqA)C272 because Y (epsilon') conformation "forbidden" or filtered. T0547 526 :KHNLFT 1guqA 266 :YDNLFQ T0547 533 :PT 1guqA 273 :SF Number of specific fragments extracted= 2 number of extra gaps= 1 total=50453 # 1wtjA.526.159 read from T0547.t2k.many.frag # found chain 1wtjA in training set Warning: unaligning (T0547)N528 (1wtjA)P162 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1wtjA)N167 because L (left) conformation "forbidden" or filtered. T0547 526 :KH 1wtjA 160 :RQ T0547 529 :LFTH 1wtjA 163 :LFGT T0547 534 :T 1wtjA 168 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=50456 # 1qqp3.526.96 read from T0547.t2k.many.frag # found chain 1qqp3 in template set Warning: unaligning (T0547)H532 (1qqp3)G103 because S (epsilon) conformation "forbidden" or filtered. T0547 526 :KHNLFT 1qqp3 97 :YYTQYS T0547 533 :PT 1qqp3 104 :TI Number of specific fragments extracted= 2 number of extra gaps= 1 total=50458 # 1iuqA.526.276 read from T0547.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)P533 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iuqA)R296 T0547 526 :KHNLFTH 1iuqA 278 :CHDIMPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50459 1mbmA expands to /projects/compbio/data/pdb/1mbm.pdb.gz 1mbmA:# 1mbmA.526.172 read from T0547.t2k.many.frag # adding 1mbmA to template set # found chain 1mbmA in template set Warning: unaligning (T0547)K526 (1mbmA)P179 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1mbmA)V186 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLFTH 1mbmA 180 :DNIIAD T0547 534 :T 1mbmA 187 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=50461 2ayuA expands to /projects/compbio/data/pdb/2ayu.pdb.gz 2ayuA:# 2ayuA.526.311 read from T0547.t2k.many.frag # adding 2ayuA to template set # found chain 2ayuA in template set Warning: unaligning (T0547)T531 (2ayuA)D317 because D (zeta) conformation "forbidden" or filtered. T0547 526 :KHNLF 2ayuA 312 :FFNFF T0547 532 :HPT 2ayuA 318 :PPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=50463 # 1n12A.526.118 read from T0547.t2k.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)H532 (1n12A)G136 because S (epsilon) conformation "forbidden" or filtered. T0547 526 :KHNLFT 1n12A 130 :MQNLIA T0547 533 :PT 1n12A 137 :PF Number of specific fragments extracted= 2 number of extra gaps= 1 total=50465 # 2b0aA.526.153 read from T0547.t2k.many.frag # found chain 2b0aA in training set Warning: unaligning (T0547)T531 (2b0aA)G159 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLF 2b0aA 154 :LKNLV T0547 532 :HPT 2b0aA 160 :KSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=50467 # 2a14A.527.183 read from T0547.t2k.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :HNLFTH 2a14A 184 :ASLLKP T0547 534 :TE 2a14A 191 :GH Number of specific fragments extracted= 2 number of extra gaps= 1 total=50469 # 1u4bA.527.526 read from T0547.t2k.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)P533 (1u4bA)H829 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1u4bA)E831 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLFTH 1u4bA 823 :HLLLQV T0547 534 :T 1u4bA 830 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=50471 # 1pgs.527.103 read from T0547.t2k.many.frag # found chain 1pgs in training set T0547 527 :HNLFTHPTE 1pgs 104 :KSLLSGNTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=50472 # 1lvmA.527.53 read from T0547.t2k.many.frag # found chain 1lvmA in training set Warning: unaligning (T0547)P533 (1lvmA)N52 because D (zeta) conformation "forbidden" or filtered. T0547 527 :HNLFTH 1lvmA 46 :HLFRRN T0547 534 :TE 1lvmA 53 :GT Number of specific fragments extracted= 2 number of extra gaps= 1 total=50474 # 1ewnA.527.67 read from T0547.t2k.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)T534 (1ewnA)G154 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :HNLFTHP 1ewnA 147 :RGMFMKP T0547 535 :E 1ewnA 155 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=50476 # 2cz1B.527.170 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLFTH 2cz1B 171 :RNDAGE T0547 534 :TE 2cz1B 178 :PT Number of specific fragments extracted= 2 number of extra gaps= 1 total=50478 # 1eerB.527.118 read from T0547.t2k.many.frag # found chain 1eerB in template set Warning: unaligning (T0547)N528 (1eerB)V119 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1eerB)G126 because L (left) conformation "forbidden" or filtered. T0547 527 :H 1eerB 118 :V T0547 529 :LFTHPT 1eerB 120 :LLDAPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=50480 # 1xszA.527.286 read from T0547.t2k.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)T531 (1xszA)G289 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1xszA)Q291 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLF 1xszA 285 :KWLF T0547 532 :H 1xszA 290 :E T0547 534 :TE 1xszA 292 :PR Number of specific fragments extracted= 3 number of extra gaps= 2 total=50483 # 1twfC.527.166 read from T0547.t2k.many.frag # found chain 1twfC in template set T0547 527 :HNLFTHPTE 1twfC 167 :HAKWGPAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=50484 # 1ud9A.527.204 read from T0547.t2k.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :HNLFTH 1ud9A 205 :ISLTKL T0547 534 :TE 1ud9A 212 :DY Number of specific fragments extracted= 2 number of extra gaps= 1 total=50486 # 1kuuA.527.175 read from T0547.t2k.many.frag # found chain 1kuuA in template set T0547 527 :HNLFTHPTE 1kuuA 176 :FAAFTHPVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=50487 # 1xdzA.527.160 read from T0547.t2k.many.frag # found chain 1xdzA in training set Warning: unaligning (T0547)H532 (1xdzA)K165 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1xdzA)N166 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :HNLFT 1xdzA 160 :LPLVK T0547 534 :TE 1xdzA 167 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50489 # 1wtjA.527.160 read from T0547.t2k.many.frag # found chain 1wtjA in training set Warning: unaligning (T0547)P533 (1wtjA)N167 because L (left) conformation "forbidden" or filtered. T0547 527 :HNLFTH 1wtjA 161 :QPLFGT T0547 534 :TE 1wtjA 168 :PI Number of specific fragments extracted= 2 number of extra gaps= 1 total=50491 # 1t0tV.527.131 read from T0547.t2k.many.frag # found chain 1t0tV in training set T0547 527 :HNLFTHPTE 1t0tV 132 :YPILPKTNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=50492 # 1vkyA.527.334 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)N528 (1vkyA)R324 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE in next template residue (1vkyA)S327 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE at template residue (1vkyA)S327 T0547 527 :H 1vkyA 323 :Y T0547 529 :L 1vkyA 325 :F T0547 532 :HPTE 1vkyA 328 :FGDA Number of specific fragments extracted= 3 number of extra gaps= 2 total=50495 # 1zupA.527.269 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)A262 Warning: unaligning (T0547)T534 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)N272 T0547 527 :HNL 1zupA 258 :PHL T0547 532 :HP 1zupA 263 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50497 # 1mbmA.527.173 read from T0547.t2k.many.frag # found chain 1mbmA in template set Warning: unaligning (T0547)P533 (1mbmA)V186 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLFTH 1mbmA 180 :DNIIAD T0547 534 :TE 1mbmA 187 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=50499 # 2awgA.527.72 read from T0547.t2k.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)H532 (2awgA)V165 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2awgA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :HNLFT 2awgA 160 :VPLMD T0547 534 :TE 2awgA 167 :ET Number of specific fragments extracted= 2 number of extra gaps= 1 total=50501 # 1tl2A.527.90 read from T0547.t2k.many.frag # found chain 1tl2A in template set Warning: unaligning (T0547)E535 (1tl2A)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :HNLFTHPT 1tl2A 91 :QFLFFDPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=50502 # 1qqp3.527.97 read from T0547.t2k.many.frag # found chain 1qqp3 in template set Warning: unaligning (T0547)H532 (1qqp3)G103 because S (epsilon) conformation "forbidden" or filtered. T0547 527 :HNLFT 1qqp3 98 :YTQYS T0547 533 :PTE 1qqp3 104 :TIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=50504 # 3sil.527.228 read from T0547.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0547)H527 (3sil)N232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 because of BadResidue code BAD_PEPTIDE in next template residue (3sil)L241 T0547 528 :NLFTHPT 3sil 233 :NIIEFNA Number of specific fragments extracted= 1 number of extra gaps= 2 total=50505 # 1tzlA.527.273 read from T0547.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)H532 (1tzlA)A280 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1tzlA)V281 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLFT 1tzlA 275 :FNLFP T0547 534 :TE 1tzlA 282 :AC Number of specific fragments extracted= 2 number of extra gaps= 1 total=50507 # 1n9eA.527.241 read from T0547.t2k.many.frag # found chain 1n9eA in template set Warning: unaligning (T0547)P533 (1n9eA)G248 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1n9eA)F250 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLFTH 1n9eA 242 :ENLVPT T0547 534 :T 1n9eA 249 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=50509 # 1no7A.527.448 read from T0547.t2k.many.frag # found chain 1no7A in template set T0547 527 :HNLFTHPTE 1no7A 899 :HNMAERTTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=50510 # 1mdaH.527.139 read from T0547.t2k.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)H532 (1mdaH)S145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1mdaH)S146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1mdaH)A148 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :HNLFT 1mdaH 140 :FFLFG T0547 534 :T 1mdaH 147 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=50512 # 2bw4A.527.291 read from T0547.t2k.many.frag # found chain 2bw4A in training set T0547 527 :HNLFTHPTE 2bw4A 292 :FYTFRQPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=50513 # 1p30A.527.569 read from T0547.t2k.many.frag # found chain 1p30A in template set Warning: unaligning (T0547)T534 (1p30A)G576 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :HNLFTHP 1p30A 569 :KNLLLLP T0547 535 :E 1p30A 577 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=50515 # 2ayuA.527.312 read from T0547.t2k.many.frag # found chain 2ayuA in template set Warning: unaligning (T0547)F530 (2ayuA)F316 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (2ayuA)D317 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2ayuA)I321 because P (beta_P) conformation "forbidden" or filtered. T0547 527 :HNL 2ayuA 313 :FNF T0547 532 :HPT 2ayuA 318 :PPK Number of specific fragments extracted= 2 number of extra gaps= 2 total=50517 # 1sh8A.527.75 read from T0547.t2k.many.frag # found chain 1sh8A in training set Warning: unaligning (T0547)E535 (1sh8A)E82 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :HNLFTHPT 1sh8A 74 :ARFYPIVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=50518 # 1vcaA.527.11 read from T0547.t2k.many.frag # found chain 1vcaA in training set Warning: unaligning (T0547)T531 (1vcaA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1vcaA)S18 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLF 1vcaA 12 :LAQI T0547 532 :H 1vcaA 17 :D T0547 534 :TE 1vcaA 19 :VS Number of specific fragments extracted= 3 number of extra gaps= 2 total=50521 # 1u4bA.528.527 read from T0547.t2k.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)P533 (1u4bA)H829 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1u4bA)E831 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLFTH 1u4bA 824 :LLLQV T0547 534 :T 1u4bA 830 :D T0547 536 :A 1u4bA 832 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=50524 # 2a14A.528.184 read from T0547.t2k.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. T0547 528 :NLFTH 2a14A 185 :SLLKP T0547 534 :TEA 2a14A 191 :GHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50526 # 1pgs.528.104 read from T0547.t2k.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)H532 (1pgs)G109 because S (epsilon) conformation "forbidden" or filtered. T0547 528 :NLFT 1pgs 105 :SLLS T0547 533 :PTEA 1pgs 110 :NTEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50528 # 2cz1B.528.171 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLFTH 2cz1B 172 :NDAGE T0547 534 :TEA 2cz1B 178 :PTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=50530 # 1ud9A.528.205 read from T0547.t2k.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLFTH 1ud9A 206 :SLTKL T0547 534 :TEA 1ud9A 212 :DYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=50532 # 1ewnA.528.68 read from T0547.t2k.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)T534 (1ewnA)G154 because T (delta_L) conformation "forbidden" or filtered. T0547 528 :NLFTHP 1ewnA 148 :GMFMKP T0547 535 :EA 1ewnA 155 :TL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50534 # 1lvmA.528.54 read from T0547.t2k.many.frag # found chain 1lvmA in training set Warning: unaligning (T0547)P533 (1lvmA)N52 because D (zeta) conformation "forbidden" or filtered. T0547 528 :NLFTH 1lvmA 47 :LFRRN T0547 534 :TEA 1lvmA 53 :GTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50536 # 1twfC.528.167 read from T0547.t2k.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)A536 (1twfC)I176 because D (zeta) conformation "forbidden" or filtered. T0547 528 :NLFTHPTE 1twfC 168 :AKWGPAAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=50537 1ydxA expands to /projects/compbio/data/pdb/1ydx.pdb.gz 1ydxA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ydxA.528.292 read from T0547.t2k.many.frag # adding 1ydxA to template set # found chain 1ydxA in template set Warning: unaligning (T0547)L529 (1ydxA)W271 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1ydxA)T275 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1ydxA)T275 T0547 528 :N 1ydxA 270 :P T0547 530 :FT 1ydxA 272 :FN T0547 534 :TEA 1ydxA 276 :GSI Number of specific fragments extracted= 3 number of extra gaps= 2 total=50540 # 1xszA.528.287 read from T0547.t2k.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)F530 (1xszA)F288 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1xszA)Q291 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NL 1xszA 286 :WL T0547 531 :TH 1xszA 289 :GE T0547 534 :TEA 1xszA 292 :PRV Number of specific fragments extracted= 3 number of extra gaps= 2 total=50543 # 1xdzA.528.161 read from T0547.t2k.many.frag # found chain 1xdzA in training set Warning: unaligning (T0547)P533 (1xdzA)N166 because T (delta_L) conformation "forbidden" or filtered. T0547 528 :NLFTH 1xdzA 161 :PLVKK T0547 534 :TEA 1xdzA 167 :GLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=50545 # 1sh8A.528.76 read from T0547.t2k.many.frag # found chain 1sh8A in training set Warning: unaligning (T0547)E535 (1sh8A)E82 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLFTHPT 1sh8A 75 :RFYPIVK T0547 536 :A 1sh8A 83 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=50547 1hxxA expands to /projects/compbio/data/pdb/1hxx.pdb.gz 1hxxA:# 1hxxA.528.127 read from T0547.t2k.many.frag # adding 1hxxA to template set # found chain 1hxxA in template set Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1hxxA)G135 because L (left) conformation "forbidden" or filtered. T0547 528 :NLFTH 1hxxA 128 :FFVGR T0547 534 :T 1hxxA 134 :G T0547 536 :A 1hxxA 136 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=50550 # 1wtjA.528.161 read from T0547.t2k.many.frag # found chain 1wtjA in training set Warning: unaligning (T0547)P533 (1wtjA)N167 because L (left) conformation "forbidden" or filtered. T0547 528 :NLFTH 1wtjA 162 :PLFGT T0547 534 :TEA 1wtjA 168 :PIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=50552 # 1eerB.528.119 read from T0547.t2k.many.frag # found chain 1eerB in template set T0547 528 :NLFTHPTEA 1eerB 119 :VLLDAPVGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=50553 # 1t0tV.528.132 read from T0547.t2k.many.frag # found chain 1t0tV in training set T0547 528 :NLFTHPTEA 1t0tV 133 :PILPKTNYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=50554 # 1kuuA.528.176 read from T0547.t2k.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)E535 (1kuuA)T184 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1kuuA)A185 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLFTHPT 1kuuA 177 :AAFTHPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=50555 # 2awgA.528.73 read from T0547.t2k.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)P533 (2awgA)G166 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2awgA)T168 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLFTH 2awgA 161 :PLMDV T0547 534 :T 2awgA 167 :E T0547 536 :A 2awgA 169 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=50558 # 2ftrA.528.39 read from T0547.t2k.many.frag # found chain 2ftrA in training set Warning: unaligning (T0547)N528 (2ftrA)P39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L529 (2ftrA)G40 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (2ftrA)D43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2ftrA)M44 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FT 2ftrA 41 :LR T0547 534 :TEA 2ftrA 45 :KVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=50560 1k8kC expands to /projects/compbio/data/pdb/1k8k.pdb.gz 1k8kC:# 1k8kC.528.23 read from T0547.t2k.many.frag # adding 1k8kC to template set # found chain 1k8kC in template set Warning: unaligning (T0547)N528 (1k8kC)A24 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)N29 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)N29 Warning: unaligning (T0547)E535 (1k8kC)E31 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFT 1k8kC 25 :ICP T0547 534 :T 1k8kC 30 :H T0547 536 :A 1k8kC 32 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=50563 # 1qqp3.528.98 read from T0547.t2k.many.frag # found chain 1qqp3 in template set Warning: unaligning (T0547)H532 (1qqp3)G103 because S (epsilon) conformation "forbidden" or filtered. T0547 528 :NLFT 1qqp3 99 :TQYS T0547 533 :PTEA 1qqp3 104 :TINL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50565 # 1p30A.528.570 read from T0547.t2k.many.frag # found chain 1p30A in template set Warning: unaligning (T0547)T534 (1p30A)G576 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLFTHP 1p30A 570 :NLLLLP T0547 535 :EA 1p30A 577 :SY Number of specific fragments extracted= 2 number of extra gaps= 1 total=50567 # 1mbmA.528.174 read from T0547.t2k.many.frag # found chain 1mbmA in template set Warning: unaligning (T0547)N528 (1mbmA)N181 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1mbmA)V186 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTH 1mbmA 182 :IIAD T0547 534 :TEA 1mbmA 187 :DAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=50569 # 1n9eA.528.242 read from T0547.t2k.many.frag # found chain 1n9eA in template set Warning: unaligning (T0547)P533 (1n9eA)G248 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1n9eA)F250 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1n9eA)F251 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLFTH 1n9eA 243 :NLVPT T0547 534 :T 1n9eA 249 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=50571 1tueB expands to /projects/compbio/data/pdb/1tue.pdb.gz 1tueB:# 1tueB.528.115 read from T0547.t2k.many.frag # adding 1tueB to template set # found chain 1tueB in template set T0547 528 :NLFTHPTEA 1tueB 113 :CFKKGGQTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=50572 # 1vkyA.528.335 read from T0547.t2k.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE in next template residue (1vkyA)S327 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE at template residue (1vkyA)S327 T0547 528 :NL 1vkyA 324 :RF T0547 532 :HPTEA 1vkyA 328 :FGDAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=50574 # 2bw4A.528.292 read from T0547.t2k.many.frag # found chain 2bw4A in training set T0547 528 :NLFTHPTEA 2bw4A 293 :YTFRQPGVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=50575 1ze3C expands to /projects/compbio/data/pdb/1ze3.pdb.gz 1ze3C:Skipped atom 1338, because occupancy 0.500 <= existing 0.500 in 1ze3C Skipped atom 1340, because occupancy 0.500 <= existing 0.500 in 1ze3C Skipped atom 1342, because occupancy 0.500 <= existing 0.500 in 1ze3C Skipped atom 1362, because occupancy 0.500 <= existing 0.500 in 1ze3C # 1ze3C.528.131 read from T0547.t2k.many.frag # adding 1ze3C to template set # found chain 1ze3C in template set T0547 528 :NLFTHPTEA 1ze3C 132 :RFRRSANSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=50576 # 1smxA.528.62 read from T0547.t2k.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)P533 (1smxA)G97 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1smxA)V100 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLFTH 1smxA 92 :DVLRE T0547 534 :TE 1smxA 98 :QE Number of specific fragments extracted= 2 number of extra gaps= 2 total=50578 # 1w99A.528.232 read from T0547.t2k.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)N528 (1w99A)H316 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1w99A)V324 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTHPTE 1w99A 317 :LFTWLKR Number of specific fragments extracted= 1 number of extra gaps= 2 total=50579 # 1u4bA.529.528 read from T0547.t2k.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)P533 (1u4bA)H829 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1u4bA)L832 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTH 1u4bA 825 :LLQV T0547 534 :TE 1u4bA 830 :DE T0547 537 :I 1u4bA 833 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=50582 # 2cz1B.529.172 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTH 2cz1B 173 :DAGE T0547 534 :TEAI 2cz1B 178 :PTYH Number of specific fragments extracted= 2 number of extra gaps= 1 total=50584 # 1pgs.529.105 read from T0547.t2k.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)H532 (1pgs)G109 because S (epsilon) conformation "forbidden" or filtered. T0547 529 :LFT 1pgs 106 :LLS T0547 533 :PTEAI 1pgs 110 :NTELK Number of specific fragments extracted= 2 number of extra gaps= 1 total=50586 # 1ud9A.529.206 read from T0547.t2k.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTH 1ud9A 207 :LTKL T0547 534 :TEAI 1ud9A 212 :DYVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=50588 # 2a14A.529.185 read from T0547.t2k.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2a14A)H192 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (2a14A)L193 because P (beta_P) conformation "forbidden" or filtered. T0547 529 :LFTH 2a14A 186 :LLKP T0547 534 :T 2a14A 191 :G T0547 537 :I 2a14A 194 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=50591 # 1hxxA.529.128 read from T0547.t2k.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1hxxA)G135 because L (left) conformation "forbidden" or filtered. T0547 529 :LFTH 1hxxA 129 :FVGR T0547 534 :T 1hxxA 134 :G T0547 536 :AI 1hxxA 136 :VA Number of specific fragments extracted= 3 number of extra gaps= 2 total=50594 # 1sh8A.529.77 read from T0547.t2k.many.frag # found chain 1sh8A in training set Warning: unaligning (T0547)E535 (1sh8A)E82 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTHPT 1sh8A 76 :FYPIVK T0547 536 :AI 1sh8A 83 :MT Number of specific fragments extracted= 2 number of extra gaps= 1 total=50596 # 1wtjA.529.162 read from T0547.t2k.many.frag # found chain 1wtjA in training set Warning: unaligning (T0547)P533 (1wtjA)N167 because L (left) conformation "forbidden" or filtered. T0547 529 :LFTH 1wtjA 163 :LFGT T0547 534 :TEAI 1wtjA 168 :PIAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=50598 # 1ydxA.529.293 read from T0547.t2k.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1ydxA)T275 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1ydxA)T275 T0547 529 :LFT 1ydxA 271 :WFN T0547 534 :TEAI 1ydxA 276 :GSIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=50600 # 1twfC.529.168 read from T0547.t2k.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)A536 (1twfC)I176 because D (zeta) conformation "forbidden" or filtered. T0547 529 :LFTHPTE 1twfC 169 :KWGPAAA T0547 537 :I 1twfC 177 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=50602 # 1ewnA.529.69 read from T0547.t2k.many.frag # found chain 1ewnA in template set T0547 529 :LFTHPTEAI 1ewnA 149 :MFMKPGTLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=50603 # 1kuuA.529.177 read from T0547.t2k.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)A536 (1kuuA)A185 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTHPTE 1kuuA 178 :AFTHPVT T0547 537 :I 1kuuA 186 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=50605 # 1lvmA.529.55 read from T0547.t2k.many.frag # found chain 1lvmA in training set Warning: unaligning (T0547)P533 (1lvmA)N52 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (1lvmA)G53 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTH 1lvmA 48 :FRRN T0547 535 :EAI 1lvmA 54 :TLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50607 # 1k8kC.529.24 read from T0547.t2k.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)N29 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)N29 T0547 529 :LFT 1k8kC 25 :ICP T0547 534 :TEAI 1k8kC 30 :HEVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=50609 # 2ftrA.529.40 read from T0547.t2k.many.frag # found chain 2ftrA in training set Warning: unaligning (T0547)P533 (2ftrA)M44 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTH 2ftrA 40 :GLRD T0547 534 :TEAI 2ftrA 45 :KVTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=50611 2bbdA expands to /projects/compbio/data/pdb/2bbd.pdb.gz 2bbdA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2bbdA.529.225 read from T0547.t2k.many.frag # adding 2bbdA to template set # found chain 2bbdA in template set T0547 529 :LFTHPTEAI 2bbdA 227 :NNTDPTEYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=50612 # 1o75A.529.223 read from T0547.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)T531 (1o75A)G226 because T (delta_L) conformation "forbidden" or filtered. T0547 529 :LF 1o75A 224 :RF T0547 532 :HPTEAI 1o75A 227 :SDAEAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=50614 # 1ok0A.529.13 read from T0547.t2k.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)E535 because of BadResidue code BAD_PEPTIDE in next template residue (1ok0A)S21 Warning: unaligning (T0547)A536 because of BadResidue code BAD_PEPTIDE at template residue (1ok0A)S21 T0547 529 :LFTHPT 1ok0A 14 :LYQSWR T0547 537 :I 1ok0A 22 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=50616 # 1eerB.529.120 read from T0547.t2k.many.frag # found chain 1eerB in template set T0547 529 :LFTHPTEAI 1eerB 120 :LLDAPVGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=50617 # 1t0tV.529.133 read from T0547.t2k.many.frag # found chain 1t0tV in training set T0547 529 :LFTHPTEAI 1t0tV 134 :ILPKTNYIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=50618 # 1t0tV.529.190 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)P533 (1t0tV)F195 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 because of BadResidue code BAD_PEPTIDE in next template residue (1t0tV)G198 Warning: unaligning (T0547)A536 because of BadResidue code BAD_PEPTIDE at template residue (1t0tV)G198 T0547 529 :LFTH 1t0tV 191 :GLDD T0547 534 :T 1t0tV 196 :E T0547 537 :I 1t0tV 199 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=50621 # 2awgA.529.74 read from T0547.t2k.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)P533 (2awgA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 529 :LFTH 2awgA 162 :LMDV T0547 534 :TEAI 2awgA 167 :ETAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=50623 # 1vcaA.529.13 read from T0547.t2k.many.frag # found chain 1vcaA in training set Warning: unaligning (T0547)P533 (1vcaA)S18 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTH 1vcaA 14 :QIGD T0547 534 :TEAI 1vcaA 19 :VSLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=50625 # 1ze3C.529.132 read from T0547.t2k.many.frag # found chain 1ze3C in template set T0547 529 :LFTHPTEAI 1ze3C 133 :FRRSANSLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=50626 # 1mdaH.529.40 read from T0547.t2k.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)L529 (1mdaH)Y41 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 (1mdaH)F42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1mdaH)T45 because E (beta_S) conformation "forbidden" or filtered. T0547 531 :TH 1mdaH 43 :AG T0547 534 :TEAI 1mdaH 46 :TENW Number of specific fragments extracted= 2 number of extra gaps= 2 total=50628 # 1xdzA.529.162 read from T0547.t2k.many.frag # found chain 1xdzA in training set Warning: unaligning (T0547)P533 (1xdzA)N166 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1xdzA)F169 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTH 1xdzA 162 :LVKK T0547 534 :TE 1xdzA 167 :GL T0547 537 :I 1xdzA 170 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=50631 # 1p30A.529.571 read from T0547.t2k.many.frag # found chain 1p30A in template set T0547 529 :LFTHPTEAI 1p30A 571 :LLLLPGSYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=50632 1qhdA expands to /projects/compbio/data/pdb/1qhd.pdb.gz 1qhdA:Skipped atom 1770, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 1772, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 1774, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 2274, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 2276, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 2278, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 2280, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 2282, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 2284, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 2286, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 3114, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 3116, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 3141, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 3143, because occupancy 0.500 <= existing 0.500 in 1qhdA # 1qhdA.529.252 read from T0547.t2k.many.frag # adding 1qhdA to template set # found chain 1qhdA in template set Warning: unaligning (T0547)E535 (1qhdA)N258 because L (left) conformation "forbidden" or filtered. T0547 529 :LFTHPT 1qhdA 252 :VILRPN T0547 536 :AI 1qhdA 259 :VE Number of specific fragments extracted= 2 number of extra gaps= 1 total=50634 # 1xszA.529.288 read from T0547.t2k.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)P533 (1xszA)Q291 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTH 1xszA 287 :LFGE T0547 534 :TEAI 1xszA 292 :PRVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=50636 # 1mdaH.529.141 read from T0547.t2k.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)P533 (1mdaH)S146 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTH 1mdaH 142 :LFGS T0547 534 :TEAI 1mdaH 147 :AAAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=50638 # 1u4bA.530.529 read from T0547.t2k.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)H532 (1u4bA)V828 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1u4bA)H829 because T (delta_L) conformation "forbidden" or filtered. T0547 530 :FT 1u4bA 826 :LQ T0547 534 :TEAII 1u4bA 830 :DELIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50640 # 2cz1B.530.173 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FTH 2cz1B 174 :AGE T0547 534 :TEAII 2cz1B 178 :PTYHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=50642 # 1ud9A.530.207 read from T0547.t2k.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 530 :FTH 1ud9A 208 :TKL T0547 534 :TEAII 1ud9A 212 :DYVKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=50644 # 1hxxA.530.129 read from T0547.t2k.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1hxxA)G135 because L (left) conformation "forbidden" or filtered. T0547 530 :FTH 1hxxA 130 :VGR T0547 534 :T 1hxxA 134 :G T0547 536 :AII 1hxxA 136 :VAT Number of specific fragments extracted= 3 number of extra gaps= 2 total=50647 # 1ze3C.530.133 read from T0547.t2k.many.frag # found chain 1ze3C in template set T0547 530 :FTHPTEAII 1ze3C 134 :RRSANSLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=50648 # 1ydxA.530.294 read from T0547.t2k.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1ydxA)T275 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1ydxA)T275 T0547 530 :FT 1ydxA 272 :FN T0547 534 :TEAII 1ydxA 276 :GSIAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50650 # 1ouwA.530.23 read from T0547.t2k.many.frag # found chain 1ouwA in training set Warning: unaligning (T0547)A536 (1ouwA)I31 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FTHPTE 1ouwA 25 :VNKINQ T0547 537 :II 1ouwA 32 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=50652 # 2bbdA.530.226 read from T0547.t2k.many.frag # found chain 2bbdA in template set Warning: unaligning (T0547)A536 (2bbdA)Y234 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FTHPTE 2bbdA 228 :NTDPTE T0547 537 :II 2bbdA 235 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50654 # 1kjlA.530.98 read from T0547.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)E535 (1kjlA)H208 because Y (epsilon') conformation "forbidden" or filtered. T0547 530 :FTHPT 1kjlA 203 :LVEPD T0547 536 :AII 1kjlA 209 :FKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=50656 # 1k8kC.530.25 read from T0547.t2k.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)N29 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)N29 Warning: unaligning (T0547)E535 (1k8kC)E31 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FT 1k8kC 26 :CP T0547 534 :T 1k8kC 30 :H T0547 536 :AII 1k8kC 32 :VHI Number of specific fragments extracted= 3 number of extra gaps= 2 total=50659 # 1pgs.530.106 read from T0547.t2k.many.frag # found chain 1pgs in training set T0547 530 :FTHPTEAII 1pgs 107 :LSGNTELKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=50660 # 1ok0A.530.14 read from T0547.t2k.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)E535 because of BadResidue code BAD_PEPTIDE in next template residue (1ok0A)S21 Warning: unaligning (T0547)A536 because of BadResidue code BAD_PEPTIDE at template residue (1ok0A)S21 T0547 530 :FTHPT 1ok0A 15 :YQSWR T0547 537 :II 1ok0A 22 :QA Number of specific fragments extracted= 2 number of extra gaps= 1 total=50662 # 1crzA.530.268 read from T0547.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)P533 (1crzA)S278 because L (left) conformation "forbidden" or filtered. T0547 530 :FTH 1crzA 275 :FPD T0547 534 :TEAII 1crzA 279 :QNLAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=50664 # 1sh8A.530.78 read from T0547.t2k.many.frag # found chain 1sh8A in training set Warning: unaligning (T0547)A536 (1sh8A)M83 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FTHPTE 1sh8A 77 :YPIVKE T0547 537 :II 1sh8A 84 :TL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50666 # 1wtjA.530.163 read from T0547.t2k.many.frag # found chain 1wtjA in training set Warning: unaligning (T0547)P533 (1wtjA)N167 because L (left) conformation "forbidden" or filtered. T0547 530 :FTH 1wtjA 164 :FGT T0547 534 :TEAII 1wtjA 168 :PIAFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=50668 # 1t0tV.530.191 read from T0547.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)P533 (1t0tV)F195 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 because of BadResidue code BAD_PEPTIDE in next template residue (1t0tV)G198 Warning: unaligning (T0547)A536 because of BadResidue code BAD_PEPTIDE at template residue (1t0tV)G198 T0547 530 :FTH 1t0tV 192 :LDD T0547 534 :T 1t0tV 196 :E T0547 537 :II 1t0tV 199 :VT Number of specific fragments extracted= 3 number of extra gaps= 2 total=50671 # 1qhdA.530.253 read from T0547.t2k.many.frag # found chain 1qhdA in template set T0547 530 :FTHPTEAII 1qhdA 253 :ILRPNNVEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=50672 # 1kuuA.530.178 read from T0547.t2k.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)E535 (1kuuA)T184 because Y (epsilon') conformation "forbidden" or filtered. T0547 530 :FTHPT 1kuuA 179 :FTHPV T0547 536 :AII 1kuuA 185 :AAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=50674 # 2a14A.530.186 read from T0547.t2k.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. T0547 530 :FTH 2a14A 187 :LKP T0547 534 :TEAII 2a14A 191 :GHLVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=50676 1sacA expands to /projects/compbio/data/pdb/1sac.pdb.gz 1sacA:# 1sacA.530.87 read from T0547.t2k.many.frag # adding 1sacA to template set # found chain 1sacA in template set Warning: unaligning (T0547)T531 (1sacA)P89 because C (cis) conformation "forbidden" or filtered. T0547 530 :F 1sacA 88 :F T0547 532 :HPTEAII 1sacA 90 :APVHICV Number of specific fragments extracted= 2 number of extra gaps= 1 total=50678 1m1hA expands to /projects/compbio/data/pdb/1m1h.pdb.gz 1m1hA:# 1m1hA.530.77 read from T0547.t2k.many.frag # adding 1m1hA to template set # found chain 1m1hA in template set Warning: unaligning (T0547)T531 (1m1hA)G79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1m1hA)K81 because G (3-10) conformation "forbidden" or filtered. T0547 530 :F 1m1hA 78 :L T0547 532 :H 1m1hA 80 :K T0547 534 :TEAII 1m1hA 82 :GVTTF Number of specific fragments extracted= 3 number of extra gaps= 2 total=50681 # 1kv7A.530.248 read from T0547.t2k.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)P533 (1kv7A)R280 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1kv7A)V283 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FTH 1kv7A 277 :MGE T0547 534 :TE 1kv7A 281 :FE T0547 537 :II 1kv7A 284 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=50684 # 1ewnA.530.70 read from T0547.t2k.many.frag # found chain 1ewnA in template set T0547 530 :FTHPTEAII 1ewnA 150 :FMKPGTLYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=50685 # 1wckA.530.182 read from T0547.t2k.many.frag # found chain 1wckA in training set T0547 530 :FTHPTEAII 1wckA 183 :TTTPSLVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=50686 # 1vcaA.530.14 read from T0547.t2k.many.frag # found chain 1vcaA in training set Warning: unaligning (T0547)P533 (1vcaA)S18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1vcaA)L21 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FTH 1vcaA 15 :IGD T0547 534 :TE 1vcaA 19 :VS T0547 537 :II 1vcaA 22 :TC Number of specific fragments extracted= 3 number of extra gaps= 2 total=50689 # 1xszA.530.289 read from T0547.t2k.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)T531 (1xszA)G289 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1xszA)Q291 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :F 1xszA 288 :F T0547 532 :H 1xszA 290 :E T0547 534 :TEAII 1xszA 292 :PRVII Number of specific fragments extracted= 3 number of extra gaps= 2 total=50692 # 1sqeA.530.31 read from T0547.t2k.many.frag # found chain 1sqeA in training set Warning: unaligning (T0547)H532 (1sqeA)G49 because T (delta_L) conformation "forbidden" or filtered. T0547 530 :FT 1sqeA 47 :IE T0547 533 :PTEAII 1sqeA 50 :FQQMFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=50694 # 1kyfA.530.103 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)P533 (1kyfA)A798 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FTH 1kyfA 795 :FTE T0547 534 :TEAII 1kyfA 799 :PVLNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=50696 # 1o75A.530.224 read from T0547.t2k.many.frag # found chain 1o75A in template set T0547 530 :FTHPTEAII 1o75A 225 :FGSDAEASV Number of specific fragments extracted= 1 number of extra gaps= 0 total=50697 # 1mdaH.530.41 read from T0547.t2k.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)P533 (1mdaH)T45 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FTH 1mdaH 42 :FAG T0547 534 :TEAII 1mdaH 46 :TENWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=50699 # 1ud9A.531.208 read from T0547.t2k.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :TH 1ud9A 209 :KL T0547 534 :TEAIIS 1ud9A 212 :DYVKVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=50701 # 1u4bA.531.530 read from T0547.t2k.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)P533 (1u4bA)H829 because T (delta_L) conformation "forbidden" or filtered. T0547 531 :TH 1u4bA 827 :QV T0547 534 :TEAIIS 1u4bA 830 :DELILE Number of specific fragments extracted= 2 number of extra gaps= 1 total=50703 # 2cz1B.531.174 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 531 :TH 2cz1B 175 :GE T0547 534 :TEAIIS 2cz1B 178 :PTYHVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=50705 # 1ze3C.531.134 read from T0547.t2k.many.frag # found chain 1ze3C in template set T0547 531 :THPTEAIIS 1ze3C 135 :RSANSLTLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=50706 # 1ok0A.531.15 read from T0547.t2k.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)E535 because of BadResidue code BAD_PEPTIDE in next template residue (1ok0A)S21 Warning: unaligning (T0547)A536 because of BadResidue code BAD_PEPTIDE at template residue (1ok0A)S21 T0547 531 :THPT 1ok0A 16 :QSWR T0547 537 :IIS 1ok0A 22 :QAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=50708 # 1ouwA.531.24 read from T0547.t2k.many.frag # found chain 1ouwA in training set Warning: unaligning (T0547)H532 (1ouwA)K27 because P (beta_P) conformation "forbidden" or filtered. T0547 531 :T 1ouwA 26 :N T0547 533 :PTEAIIS 1ouwA 28 :INQIVIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=50710 # 1ydxA.531.295 read from T0547.t2k.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1ydxA)T275 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1ydxA)T275 T0547 531 :T 1ydxA 273 :N T0547 534 :TEAIIS 1ydxA 276 :GSIALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=50712 # 1kjlA.531.99 read from T0547.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)E535 (1kjlA)H208 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :THPT 1kjlA 204 :VEPD T0547 536 :AIIS 1kjlA 209 :FKVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=50714 1vbvA expands to /projects/compbio/data/pdb/1vbv.pdb.gz 1vbvA:# 1vbvA.531.46 read from T0547.t2k.many.frag # adding 1vbvA to template set # found chain 1vbvA in template set Warning: unaligning (T0547)H532 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)A48 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vbvA)P50 Warning: unaligning (T0547)T534 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)P50 Warning: unaligning (T0547)S539 (1vbvA)V55 because P (beta_P) conformation "forbidden" or filtered. T0547 535 :EAII 1vbvA 51 :WYHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=50715 # 1crzA.531.269 read from T0547.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)P533 (1crzA)S278 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S539 (1crzA)T284 because P (beta_P) conformation "forbidden" or filtered. T0547 531 :TH 1crzA 276 :PD T0547 534 :TEAII 1crzA 279 :QNLAF Number of specific fragments extracted= 2 number of extra gaps= 2 total=50717 # 1hxxA.531.130 read from T0547.t2k.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1hxxA)G135 because L (left) conformation "forbidden" or filtered. T0547 531 :TH 1hxxA 131 :GR T0547 534 :T 1hxxA 134 :G T0547 536 :AIIS 1hxxA 136 :VATY Number of specific fragments extracted= 3 number of extra gaps= 2 total=50720 # 1p5tA.531.63 read from T0547.t2k.many.frag # found chain 1p5tA in template set Warning: unaligning (T0547)H532 (1p5tA)D65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1p5tA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :T 1p5tA 64 :R T0547 533 :PT 1p5tA 66 :KV T0547 536 :AIIS 1p5tA 69 :FSFE Number of specific fragments extracted= 3 number of extra gaps= 2 total=50723 # 1m1hA.531.78 read from T0547.t2k.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)P533 (1m1hA)K81 because G (3-10) conformation "forbidden" or filtered. T0547 531 :TH 1m1hA 79 :GK T0547 534 :TEAIIS 1m1hA 82 :GVTTFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=50725 # 1k8kC.531.26 read from T0547.t2k.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)N29 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)N29 Warning: unaligning (T0547)E535 (1k8kC)E31 because E (beta_S) conformation "forbidden" or filtered. T0547 531 :T 1k8kC 27 :P T0547 534 :T 1k8kC 30 :H T0547 536 :AIIS 1k8kC 32 :VHIY Number of specific fragments extracted= 3 number of extra gaps= 2 total=50728 # 1xyiA.531.24 read from T0547.t2k.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)P533 (1xyiA)G27 because S (epsilon) conformation "forbidden" or filtered. T0547 531 :TH 1xyiA 25 :RA T0547 534 :TEAIIS 1xyiA 28 :KAVSFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=50730 # 2bbdA.531.227 read from T0547.t2k.many.frag # found chain 2bbdA in template set Warning: unaligning (T0547)E535 (2bbdA)E233 because E (beta_S) conformation "forbidden" or filtered. T0547 531 :THPT 2bbdA 229 :TDPT T0547 536 :AIIS 2bbdA 234 :YELK Number of specific fragments extracted= 2 number of extra gaps= 1 total=50732 # 1sacA.531.88 read from T0547.t2k.many.frag # found chain 1sacA in template set Warning: unaligning (T0547)T531 (1sacA)P89 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1sacA)A90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1sacA)H93 because E (beta_S) conformation "forbidden" or filtered. T0547 533 :PT 1sacA 91 :PV T0547 536 :AIIS 1sacA 94 :ICVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=50734 1zh1A expands to /projects/compbio/data/pdb/1zh1.pdb.gz 1zh1A:# 1zh1A.531.78 read from T0547.t2k.many.frag # adding 1zh1A to template set # found chain 1zh1A in template set Warning: unaligning (T0547)P533 (1zh1A)E116 because G (3-10) conformation "forbidden" or filtered. T0547 531 :TH 1zh1A 114 :AA T0547 534 :TEAIIS 1zh1A 117 :EYVEVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=50736 # 1th7A.531.16 read from T0547.t2k.many.frag # found chain 1th7A in training set Warning: unaligning (T0547)H532 (1th7A)L18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1th7A)N19 because L (left) conformation "forbidden" or filtered. T0547 531 :T 1th7A 17 :S T0547 534 :TEAIIS 1th7A 20 :NLVLVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=50738 2ffmA expands to /projects/compbio/data/pdb/2ffm.pdb.gz 2ffmA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2ffmA.531.55 read from T0547.t2k.many.frag # adding 2ffmA to template set # found chain 2ffmA in template set Warning: unaligning (T0547)P533 (2ffmA)M58 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2ffmA)F60 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :TH 2ffmA 56 :HV T0547 534 :T 2ffmA 59 :D T0547 536 :AIIS 2ffmA 61 :ISVD Number of specific fragments extracted= 3 number of extra gaps= 2 total=50741 # 1qhdA.531.254 read from T0547.t2k.many.frag # found chain 1qhdA in template set T0547 531 :THPTEAIIS 1qhdA 254 :LRPNNVEIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=50742 2bsdA expands to /projects/compbio/data/pdb/2bsd.pdb.gz 2bsdA:# 2bsdA.531.225 read from T0547.t2k.many.frag # adding 2bsdA to template set # found chain 2bsdA in template set Warning: unaligning (T0547)T531 (2bsdA)G226 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2bsdA)D228 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (2bsdA)F231 because Y (epsilon') conformation "forbidden" or filtered. T0547 532 :H 2bsdA 227 :R T0547 534 :TE 2bsdA 229 :TS T0547 537 :IIS 2bsdA 232 :HID Number of specific fragments extracted= 3 number of extra gaps= 3 total=50745 # 1wckA.531.183 read from T0547.t2k.many.frag # found chain 1wckA in training set T0547 531 :THPTEAIIS 1wckA 184 :TTPSLVEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=50746 # 1unqA.531.69 read from T0547.t2k.many.frag # found chain 1unqA in training set Warning: unaligning (T0547)T531 (1unqA)P68 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (1unqA)N71 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1unqA)T72 because P (beta_P) conformation "forbidden" or filtered. T0547 532 :HP 1unqA 69 :RP T0547 536 :AIIS 1unqA 73 :FIIR Number of specific fragments extracted= 2 number of extra gaps= 2 total=50748 # 1sh8A.531.79 read from T0547.t2k.many.frag # found chain 1sh8A in training set T0547 531 :THPTEAIIS 1sh8A 78 :PIVKEMTLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=50749 # 1khcA.531.42 read from T0547.t2k.many.frag # found chain 1khcA in training set Warning: unaligning (T0547)H532 (1khcA)M262 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (1khcA)G264 because T (delta_L) conformation "forbidden" or filtered. T0547 531 :T 1khcA 261 :A T0547 533 :P 1khcA 263 :P T0547 535 :EAIIS 1khcA 265 :MRWVQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=50752 # 1ujcA.531.128 read from T0547.t2k.many.frag # found chain 1ujcA in template set Warning: unaligning (T0547)P533 (1ujcA)S131 because T (delta_L) conformation "forbidden" or filtered. T0547 531 :TH 1ujcA 129 :TT T0547 534 :TEAIIS 1ujcA 132 :AIASVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=50754 1jlyA expands to /projects/compbio/data/pdb/1jly.pdb.gz 1jlyA:# 1jlyA.531.105 read from T0547.t2k.many.frag # adding 1jlyA to template set # found chain 1jlyA in template set Warning: unaligning (T0547)T531 (1jlyA)G105 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1jlyA)M107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1jlyA)V110 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :H 1jlyA 106 :N T0547 534 :TE 1jlyA 108 :KK T0547 537 :IIS 1jlyA 111 :RLL Number of specific fragments extracted= 3 number of extra gaps= 3 total=50757 # 1qlmA.531.283 read from T0547.t2k.many.frag # found chain 1qlmA in template set T0547 531 :THPTEAIIS 1qlmA 284 :FAPARVVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=50758 # 2erfA.531.98 read from T0547.t2k.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)P533 (2erfA)A107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (2erfA)G108 because L (left) conformation "forbidden" or filtered. T0547 531 :TH 2erfA 105 :GK T0547 535 :EAIIS 2erfA 109 :TLDLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=50760 # 1ud9A.532.209 read from T0547.t2k.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 532 :H 1ud9A 210 :L T0547 534 :TEAIISI 1ud9A 212 :DYVKVAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=50762 # 2cz1B.532.175 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (2cz1B)Y180 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :H 2cz1B 176 :E T0547 534 :TE 2cz1B 178 :PT T0547 537 :IISI 2cz1B 181 :HVKF Number of specific fragments extracted= 3 number of extra gaps= 2 total=50765 # 1ze3C.532.135 read from T0547.t2k.many.frag # found chain 1ze3C in template set T0547 532 :HPTEAIISI 1ze3C 136 :SANSLTLIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=50766 # 1u4bA.532.531 read from T0547.t2k.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)P533 (1u4bA)H829 because T (delta_L) conformation "forbidden" or filtered. T0547 532 :H 1u4bA 828 :V T0547 534 :TEAIISI 1u4bA 830 :DELILEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=50768 # 1kjlA.532.100 read from T0547.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)E535 (1kjlA)H208 because Y (epsilon') conformation "forbidden" or filtered. T0547 532 :HPT 1kjlA 205 :EPD T0547 536 :AIISI 1kjlA 209 :FKVAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=50770 # 1vbvA.532.47 read from T0547.t2k.many.frag # found chain 1vbvA in template set Warning: unaligning (T0547)H532 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)A48 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vbvA)P50 Warning: unaligning (T0547)T534 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)P50 T0547 535 :EAIISI 1vbvA 51 :WYHVVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=50771 # 1p5tA.532.64 read from T0547.t2k.many.frag # found chain 1p5tA in template set Warning: unaligning (T0547)H532 (1p5tA)D65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1p5tA)M68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S539 (1p5tA)E72 because D (zeta) conformation "forbidden" or filtered. T0547 533 :PT 1p5tA 66 :KV T0547 536 :AII 1p5tA 69 :FSF T0547 540 :I 1p5tA 73 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=50774 # 1ok0A.532.16 read from T0547.t2k.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)E535 because of BadResidue code BAD_PEPTIDE in next template residue (1ok0A)S21 Warning: unaligning (T0547)A536 because of BadResidue code BAD_PEPTIDE at template residue (1ok0A)S21 T0547 532 :HPT 1ok0A 17 :SWR T0547 537 :IISI 1ok0A 22 :QADN Number of specific fragments extracted= 2 number of extra gaps= 1 total=50776 # 1crzA.532.270 read from T0547.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)H532 (1crzA)D277 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1crzA)S278 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S539 (1crzA)T284 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :TEAII 1crzA 279 :QNLAF T0547 540 :I 1crzA 285 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=50778 # 1hxxA.532.131 read from T0547.t2k.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)H532 (1hxxA)R132 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :TEAIISI 1hxxA 134 :GGVATYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=50779 # 1ouwA.532.25 read from T0547.t2k.many.frag # found chain 1ouwA in training set T0547 532 :HPTEAIISI 1ouwA 27 :KINQIVISY Number of specific fragments extracted= 1 number of extra gaps= 0 total=50780 # 1k8kC.532.27 read from T0547.t2k.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)N29 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)N29 T0547 534 :TEAIISI 1k8kC 30 :HEVHIYE Number of specific fragments extracted= 1 number of extra gaps= 1 total=50781 # 1ydxA.532.296 read from T0547.t2k.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1ydxA)T275 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1ydxA)T275 T0547 534 :TEAIISI 1ydxA 276 :GSIALEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=50782 # 2bsdA.532.226 read from T0547.t2k.many.frag # found chain 2bsdA in template set Warning: unaligning (T0547)P533 (2bsdA)D228 because G (3-10) conformation "forbidden" or filtered. T0547 532 :H 2bsdA 227 :R T0547 534 :TEAIISI 2bsdA 229 :TSFHIDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=50784 # 1k3iA.532.427 read from T0547.t2k.many.frag # found chain 1k3iA in training set Warning: unaligning (T0547)P533 (1k3iA)T412 because G (3-10) conformation "forbidden" or filtered. T0547 532 :H 1k3iA 411 :T T0547 534 :TEAIISI 1k3iA 413 :NAHIITL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50786 # 1m1hA.532.79 read from T0547.t2k.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)P533 (1m1hA)K81 because G (3-10) conformation "forbidden" or filtered. T0547 532 :H 1m1hA 80 :K T0547 534 :TEAIISI 1m1hA 82 :GVTTFRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=50788 # 1zh1A.532.79 read from T0547.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)P533 (1zh1A)E116 because G (3-10) conformation "forbidden" or filtered. T0547 532 :H 1zh1A 115 :A T0547 534 :TEAIISI 1zh1A 117 :EYVEVTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=50790 # 1sh8A.532.80 read from T0547.t2k.many.frag # found chain 1sh8A in training set T0547 532 :HPTEAIISI 1sh8A 79 :IVKEMTLRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=50791 # 1qhdA.532.255 read from T0547.t2k.many.frag # found chain 1qhdA in template set Warning: unaligning (T0547)H532 (1qhdA)R255 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1qhdA)N258 because L (left) conformation "forbidden" or filtered. T0547 533 :PT 1qhdA 256 :PN T0547 536 :AIISI 1qhdA 259 :VEIEF Number of specific fragments extracted= 2 number of extra gaps= 2 total=50793 # 2bbdA.532.228 read from T0547.t2k.many.frag # found chain 2bbdA in template set T0547 532 :HPTEAIISI 2bbdA 230 :DPTEYELKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=50794 # 2brfA.532.46 read from T0547.t2k.many.frag # found chain 2brfA in training set T0547 532 :HPTEAIISI 2brfA 47 :SRTQVELVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=50795 # 2ffmA.532.56 read from T0547.t2k.many.frag # found chain 2ffmA in template set Warning: unaligning (T0547)P533 (2ffmA)M58 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2ffmA)F60 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (2ffmA)I61 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :H 2ffmA 57 :V T0547 534 :T 2ffmA 59 :D T0547 537 :IISI 2ffmA 62 :SVDK Number of specific fragments extracted= 3 number of extra gaps= 2 total=50798 # 2erfA.532.99 read from T0547.t2k.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)P533 (2erfA)A107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (2erfA)G108 because L (left) conformation "forbidden" or filtered. T0547 532 :H 2erfA 106 :K T0547 535 :EAIISI 2erfA 109 :TLDLSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50800 # 1ssxA.532.60 read from T0547.t2k.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)P533 (1ssxA)N101 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (1ssxA)D102 because D (zeta) conformation "forbidden" or filtered. T0547 532 :H 1ssxA 100 :G T0547 535 :EAIISI 1ssxA 103 :RAWVSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50802 # 1ujcA.532.129 read from T0547.t2k.many.frag # found chain 1ujcA in template set Warning: unaligning (T0547)P533 (1ujcA)S131 because T (delta_L) conformation "forbidden" or filtered. T0547 532 :H 1ujcA 130 :T T0547 534 :TEAIISI 1ujcA 132 :AIASVTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50804 # 1xyiA.532.25 read from T0547.t2k.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)I538 (1xyiA)F32 because Y (epsilon') conformation "forbidden" or filtered. T0547 532 :HPTEAI 1xyiA 26 :AGKAVS T0547 539 :SI 1xyiA 33 :TY Number of specific fragments extracted= 2 number of extra gaps= 1 total=50806 # 1g6gA.532.56 read from T0547.t2k.many.frag # found chain 1g6gA in training set Warning: unaligning (T0547)H532 (1g6gA)S85 because P (beta_P) conformation "forbidden" or filtered. T0547 533 :PTEAIISI 1g6gA 86 :NKHFQILL Number of specific fragments extracted= 1 number of extra gaps= 1 total=50807 1ahsA expands to /projects/compbio/data/pdb/1ahs.pdb.gz 1ahsA:# 1ahsA.532.101 read from T0547.t2k.many.frag # adding 1ahsA to template set # found chain 1ahsA in template set T0547 532 :HPTEAIISI 1ahsA 227 :TIAPVNVGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=50808 # 1th7A.532.17 read from T0547.t2k.many.frag # found chain 1th7A in training set Warning: unaligning (T0547)H532 (1th7A)L18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1th7A)N19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1th7A)L21 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :T 1th7A 20 :N T0547 536 :AIISI 1th7A 22 :VLVKL Number of specific fragments extracted= 2 number of extra gaps= 2 total=50810 1sz2A expands to /projects/compbio/data/pdb/1sz2.pdb.gz 1sz2A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 533, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 535, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 537, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 539, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 652, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 654, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 656, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 660, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1311, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 1313, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 1315, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 1317, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 1319, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1825, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1827, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1829, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1831, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 2309, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 2311, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 2313, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 2315, because occupancy 0.500 <= existing 0.500 in 1sz2A # 1sz2A.532.148 read from T0547.t2k.many.frag # adding 1sz2A to template set # found chain 1sz2A in template set Warning: unaligning (T0547)H532 (1sz2A)G138 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1sz2A)L139 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :TEAIISI 1sz2A 140 :GVAHLVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=50811 # 1ud9A.533.210 read from T0547.t2k.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1ud9A)A219 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TEAIISI 1ud9A 212 :DYVKVAF Number of specific fragments extracted= 1 number of extra gaps= 2 total=50812 # 2cz1B.533.176 read from T0547.t2k.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2cz1B)T179 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (2cz1B)A185 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :T 2cz1B 178 :P T0547 536 :AIISI 2cz1B 180 :YHVKF Number of specific fragments extracted= 2 number of extra gaps= 3 total=50814 # 1ze3C.533.136 read from T0547.t2k.many.frag # found chain 1ze3C in template set Warning: unaligning (T0547)N541 (1ze3C)P145 because G (3-10) conformation "forbidden" or filtered. T0547 533 :PTEAIISI 1ze3C 137 :ANSLTLIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=50815 # 1kjlA.533.101 read from T0547.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)E535 (1kjlA)H208 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1kjlA)N214 because L (left) conformation "forbidden" or filtered. T0547 533 :PT 1kjlA 206 :PD T0547 536 :AIISI 1kjlA 209 :FKVAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=50817 # 1u4bA.533.532 read from T0547.t2k.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)P533 (1u4bA)H829 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1u4bA)L832 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I540 (1u4bA)A836 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TE 1u4bA 830 :DE T0547 537 :IIS 1u4bA 833 :ILE T0547 541 :N 1u4bA 837 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=50820 # 1k3iA.533.428 read from T0547.t2k.many.frag # found chain 1k3iA in training set Warning: unaligning (T0547)P533 (1k3iA)T412 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1k3iA)G420 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TEAIISI 1k3iA 413 :NAHIITL Number of specific fragments extracted= 1 number of extra gaps= 2 total=50821 # 1ok0A.533.17 read from T0547.t2k.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)E535 because of BadResidue code BAD_PEPTIDE in next template residue (1ok0A)S21 Warning: unaligning (T0547)A536 because of BadResidue code BAD_PEPTIDE at template residue (1ok0A)S21 T0547 533 :PT 1ok0A 18 :WR T0547 537 :IISIN 1ok0A 22 :QADNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=50823 # 1m1hA.533.80 read from T0547.t2k.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)P533 (1m1hA)K81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1m1hA)V83 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :T 1m1hA 82 :G T0547 536 :AIISIN 1m1hA 84 :TTFRIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=50825 # 2brfA.533.47 read from T0547.t2k.many.frag # found chain 2brfA in training set T0547 533 :PTEAIISIN 2brfA 48 :RTQVELVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=50826 # 1vbvA.533.48 read from T0547.t2k.many.frag # found chain 1vbvA in template set Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vbvA)P50 Warning: unaligning (T0547)T534 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)P50 T0547 535 :EAIISIN 1vbvA 51 :WYHVVME Number of specific fragments extracted= 1 number of extra gaps= 1 total=50827 # 1sz2A.533.149 read from T0547.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0547)P533 (1sz2A)L139 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1sz2A)V141 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1sz2A)V147 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :T 1sz2A 140 :G T0547 536 :AIISI 1sz2A 142 :AHLVH Number of specific fragments extracted= 2 number of extra gaps= 3 total=50829 # 1p5tA.533.65 read from T0547.t2k.many.frag # found chain 1p5tA in template set Warning: unaligning (T0547)E535 (1p5tA)M68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1p5tA)G74 because P (beta_P) conformation "forbidden" or filtered. T0547 533 :PT 1p5tA 66 :KV T0547 536 :AIISI 1p5tA 69 :FSFEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=50831 # 1zh1A.533.80 read from T0547.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)P533 (1zh1A)E116 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1zh1A)Y118 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :T 1zh1A 117 :E T0547 536 :AIISIN 1zh1A 119 :VEVTRV Number of specific fragments extracted= 2 number of extra gaps= 2 total=50833 # 2bsdA.533.227 read from T0547.t2k.many.frag # found chain 2bsdA in template set Warning: unaligning (T0547)P533 (2bsdA)D228 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (2bsdA)F231 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TE 2bsdA 229 :TS T0547 537 :IISIN 2bsdA 232 :HIDIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=50835 # 1k8kC.533.28 read from T0547.t2k.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)N29 T0547 534 :TEAIISIN 1k8kC 30 :HEVHIYEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=50836 # 1ydxA.533.297 read from T0547.t2k.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1ydxA)T275 T0547 534 :TEAIISIN 1ydxA 276 :GSIALEPM Number of specific fragments extracted= 1 number of extra gaps= 1 total=50837 # 1l8bA.533.121 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 533 :PTEAIISIN 1l8bA 149 :VCGAVVNVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=50838 # 1hxxA.533.132 read from T0547.t2k.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1hxxA)G135 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1hxxA)N141 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :T 1hxxA 134 :G T0547 536 :AIISI 1hxxA 136 :VATYR Number of specific fragments extracted= 2 number of extra gaps= 3 total=50840 # 1sh8A.533.81 read from T0547.t2k.many.frag # found chain 1sh8A in training set Warning: unaligning (T0547)E535 (1sh8A)E82 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PT 1sh8A 80 :VK T0547 536 :AIISIN 1sh8A 83 :MTLRFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=50842 # 1crzA.533.271 read from T0547.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)P533 (1crzA)S278 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1crzA)N280 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. T0547 534 :T 1crzA 279 :Q T0547 536 :AIISI 1crzA 281 :LAFTS Number of specific fragments extracted= 2 number of extra gaps= 3 total=50844 # 1ujcA.533.130 read from T0547.t2k.many.frag # found chain 1ujcA in template set Warning: unaligning (T0547)P533 (1ujcA)S131 because T (delta_L) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1ujcA 132 :AIASVTLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=50845 # 1xyiA.533.26 read from T0547.t2k.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)P533 (1xyiA)G27 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1xyiA)A29 because N (gamma') conformation "forbidden" or filtered. T0547 534 :T 1xyiA 28 :K T0547 536 :AIISIN 1xyiA 30 :VSFTYD Number of specific fragments extracted= 2 number of extra gaps= 2 total=50847 # 2bbdA.533.229 read from T0547.t2k.many.frag # found chain 2bbdA in template set T0547 533 :PTEAIISIN 2bbdA 231 :PTEYELKIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=50848 # 1ouwA.533.26 read from T0547.t2k.many.frag # found chain 1ouwA in training set T0547 533 :PTEAIISIN 1ouwA 28 :INQIVISYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50849 # 1khcA.533.44 read from T0547.t2k.many.frag # found chain 1khcA in training set Warning: unaligning (T0547)T534 (1khcA)G264 because T (delta_L) conformation "forbidden" or filtered. T0547 533 :P 1khcA 263 :P T0547 535 :EAIISIN 1khcA 265 :MRWVQWF Number of specific fragments extracted= 2 number of extra gaps= 1 total=50851 # 1qhdA.533.256 read from T0547.t2k.many.frag # found chain 1qhdA in template set Warning: unaligning (T0547)E535 (1qhdA)N258 because L (left) conformation "forbidden" or filtered. T0547 533 :PT 1qhdA 256 :PN T0547 536 :AIISIN 1qhdA 259 :VEIEFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50853 # 2nlrA.533.26 read from T0547.t2k.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)P533 (2nlrA)T27 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2nlrA)P29 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :T 2nlrA 28 :A T0547 536 :AIISIN 2nlrA 30 :QCVTAT Number of specific fragments extracted= 2 number of extra gaps= 2 total=50855 # 1th7A.533.18 read from T0547.t2k.many.frag # found chain 1th7A in training set Warning: unaligning (T0547)P533 (1th7A)N19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S539 (1th7A)K25 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :TEAII 1th7A 20 :NLVLV T0547 540 :IN 1th7A 26 :LK Number of specific fragments extracted= 2 number of extra gaps= 2 total=50857 # 1q9uA.533.79 read from T0547.t2k.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)P533 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1q9uA)K79 Warning: unaligning (T0547)E535 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q9uA)K79 Warning: unaligning (T0547)A536 (1q9uA)L80 because E (beta_S) conformation "forbidden" or filtered. T0547 537 :IISIN 1q9uA 81 :VVYQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=50858 # 2erfA.533.100 read from T0547.t2k.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)P533 (2erfA)A107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (2erfA)G108 because L (left) conformation "forbidden" or filtered. T0547 535 :EAIISIN 2erfA 109 :TLDLSLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=50859 # 1ud9A.534.211 read from T0547.t2k.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)N541 (1ud9A)A219 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TEAIISI 1ud9A 212 :DYVKVAF T0547 542 :E 1ud9A 220 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=50861 # 1ze3C.534.137 read from T0547.t2k.many.frag # found chain 1ze3C in template set T0547 534 :TEAIISINE 1ze3C 138 :NSLTLINPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=50862 # 1sz2A.534.150 read from T0547.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0547)N541 (1sz2A)V147 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1sz2A)D148 because L (left) conformation "forbidden" or filtered. T0547 534 :TEAIISI 1sz2A 140 :GVAHLVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=50863 # 1ok0A.534.18 read from T0547.t2k.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)E535 because of BadResidue code BAD_PEPTIDE in next template residue (1ok0A)S21 Warning: unaligning (T0547)A536 because of BadResidue code BAD_PEPTIDE at template residue (1ok0A)S21 Warning: unaligning (T0547)E542 (1ok0A)C27 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :T 1ok0A 19 :R T0547 537 :IISIN 1ok0A 22 :QADNG Number of specific fragments extracted= 2 number of extra gaps= 2 total=50865 # 1p5tA.534.66 read from T0547.t2k.many.frag # found chain 1p5tA in template set Warning: unaligning (T0547)E535 (1p5tA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :T 1p5tA 67 :V T0547 536 :AIISINE 1p5tA 69 :FSFEAGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=50867 # 1m1hA.534.81 read from T0547.t2k.many.frag # found chain 1m1hA in template set T0547 534 :TEAIISINE 1m1hA 82 :GVTTFRIEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=50868 # 1l8bA.534.122 read from T0547.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)E535 (1l8bA)G151 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :T 1l8bA 150 :C T0547 536 :AIISINE 1l8bA 152 :AVVNVRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=50870 # 2brfA.534.48 read from T0547.t2k.many.frag # found chain 2brfA in training set Warning: unaligning (T0547)A536 (2brfA)V51 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :TE 2brfA 49 :TQ T0547 537 :IISINE 2brfA 52 :ELVADP Number of specific fragments extracted= 2 number of extra gaps= 1 total=50872 # 1vbvA.534.49 read from T0547.t2k.many.frag # found chain 1vbvA in template set Warning: unaligning (T0547)T534 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)P50 Warning: unaligning (T0547)E542 (1vbvA)D58 because P (beta_P) conformation "forbidden" or filtered. T0547 535 :EAIISIN 1vbvA 51 :WYHVVME Number of specific fragments extracted= 1 number of extra gaps= 2 total=50873 # 1k3iA.534.429 read from T0547.t2k.many.frag # found chain 1k3iA in training set T0547 534 :TEAIISINE 1k3iA 413 :NAHIITLGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=50874 # 1zh1A.534.81 read from T0547.t2k.many.frag # found chain 1zh1A in template set T0547 534 :TEAIISINE 1zh1A 117 :EYVEVTRVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50875 # 2cz1B.534.177 read from T0547.t2k.many.frag # found chain 2cz1B in training set T0547 534 :TEAIISINE 2cz1B 178 :PTYHVKFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=50876 # 2bsdA.534.228 read from T0547.t2k.many.frag # found chain 2bsdA in template set T0547 534 :TEAIISINE 2bsdA 229 :TSFHIDINP Number of specific fragments extracted= 1 number of extra gaps= 0 total=50877 # 1ujcA.534.131 read from T0547.t2k.many.frag # found chain 1ujcA in template set Warning: unaligning (T0547)E535 (1ujcA)I133 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :T 1ujcA 132 :A T0547 536 :AIISINE 1ujcA 134 :ASVTLDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=50879 # 1k8kC.534.29 read from T0547.t2k.many.frag # found chain 1k8kC in template set T0547 534 :TEAIISINE 1k8kC 30 :HEVHIYEKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=50880 # 1kjlA.534.102 read from T0547.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)E535 (1kjlA)H208 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1kjlA)D215 because T (delta_L) conformation "forbidden" or filtered. T0547 534 :T 1kjlA 207 :D T0547 536 :AIISIN 1kjlA 209 :FKVAVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=50882 # 1xyiA.534.27 read from T0547.t2k.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)I538 (1xyiA)F32 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TEAI 1xyiA 28 :KAVS T0547 539 :SINE 1xyiA 33 :TYDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=50884 # 1ydxA.534.298 read from T0547.t2k.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)E542 (1ydxA)N284 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1ydxA 276 :GSIALEPM Number of specific fragments extracted= 1 number of extra gaps= 1 total=50885 # 1u4bA.534.533 read from T0547.t2k.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)N541 (1u4bA)P837 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :TEAIISI 1u4bA 830 :DELILEA T0547 542 :E 1u4bA 838 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=50887 # 1khcA.534.45 read from T0547.t2k.many.frag # found chain 1khcA in training set Warning: unaligning (T0547)T534 (1khcA)G264 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1khcA)G272 because T (delta_L) conformation "forbidden" or filtered. T0547 535 :EAIISIN 1khcA 265 :MRWVQWF Number of specific fragments extracted= 1 number of extra gaps= 2 total=50888 # 1hxxA.534.133 read from T0547.t2k.many.frag # found chain 1hxxA in template set T0547 534 :TEAIISINE 1hxxA 134 :GGVATYRNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=50889 # 1crzA.534.272 read from T0547.t2k.many.frag # found chain 1crzA in template set T0547 534 :TEAIISINE 1crzA 279 :QNLAFTSDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=50890 # 1q9uA.534.80 read from T0547.t2k.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)E535 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q9uA)K79 Warning: unaligning (T0547)A536 (1q9uA)L80 because E (beta_S) conformation "forbidden" or filtered. T0547 537 :IISINE 1q9uA 81 :VVYQEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=50891 # 1sh8A.534.82 read from T0547.t2k.many.frag # found chain 1sh8A in training set Warning: unaligning (T0547)E535 (1sh8A)E82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1sh8A)R89 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :T 1sh8A 81 :K T0547 536 :AIISIN 1sh8A 83 :MTLRFR Number of specific fragments extracted= 2 number of extra gaps= 2 total=50893 # 1th7A.534.19 read from T0547.t2k.many.frag # found chain 1th7A in training set Warning: unaligning (T0547)E535 (1th7A)L21 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :T 1th7A 20 :N T0547 536 :AIISINE 1th7A 22 :VLVKLKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=50895 # 2bbdA.534.230 read from T0547.t2k.many.frag # found chain 2bbdA in template set Warning: unaligning (T0547)E535 (2bbdA)E233 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :T 2bbdA 232 :T T0547 536 :AIISINE 2bbdA 234 :YELKIVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=50897 # 1ouwA.534.27 read from T0547.t2k.many.frag # found chain 1ouwA in training set Warning: unaligning (T0547)E542 (1ouwA)G37 because T (delta_L) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1ouwA 29 :NQIVISYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=50898 # 1jtgB.534.144 read from T0547.t2k.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)T534 (1jtgB)G145 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1jtgB)D153 because L (left) conformation "forbidden" or filtered. T0547 535 :EAIISIN 1jtgB 146 :SAHLWFT Number of specific fragments extracted= 1 number of extra gaps= 2 total=50899 # 1qhdA.534.257 read from T0547.t2k.many.frag # found chain 1qhdA in template set Warning: unaligning (T0547)E535 (1qhdA)N258 because L (left) conformation "forbidden" or filtered. T0547 534 :T 1qhdA 257 :N T0547 536 :AIISINE 1qhdA 259 :VEIEFLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=50901 # 2erfA.534.101 read from T0547.t2k.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)T534 (2erfA)G108 because L (left) conformation "forbidden" or filtered. T0547 535 :EAIISINE 2erfA 109 :TLDLSLTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=50902 # 1ud9A.535.212 read from T0547.t2k.many.frag # found chain 1ud9A in training set T0547 535 :EAIISINEK 1ud9A 213 :YVKVAFADQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=50903 # 1ze3C.535.138 read from T0547.t2k.many.frag # found chain 1ze3C in template set Warning: unaligning (T0547)K543 (1ze3C)P147 because G (3-10) conformation "forbidden" or filtered. T0547 535 :EAIISINE 1ze3C 139 :SLTLINPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=50904 # 1ydxA.535.299 read from T0547.t2k.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)E542 (1ydxA)N284 because Y (epsilon') conformation "forbidden" or filtered. T0547 535 :EAIISIN 1ydxA 277 :SIALEPM T0547 543 :K 1ydxA 285 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=50906 # 1ok0A.535.19 read from T0547.t2k.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)E535 because of BadResidue code BAD_PEPTIDE in next template residue (1ok0A)S21 Warning: unaligning (T0547)A536 because of BadResidue code BAD_PEPTIDE at template residue (1ok0A)S21 T0547 537 :IISINEK 1ok0A 22 :QADNGCA Number of specific fragments extracted= 1 number of extra gaps= 1 total=50907 # 1sz2A.535.151 read from T0547.t2k.many.frag # found chain 1sz2A in template set T0547 535 :EAIISINEK 1sz2A 141 :VAHLVHVDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=50908 # 1k3iA.535.430 read from T0547.t2k.many.frag # found chain 1k3iA in training set Warning: unaligning (T0547)E535 (1k3iA)A414 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1k3iA)G420 because Y (epsilon') conformation "forbidden" or filtered. T0547 536 :AIISI 1k3iA 415 :HIITL T0547 542 :EK 1k3iA 421 :EP Number of specific fragments extracted= 2 number of extra gaps= 2 total=50910 # 1zh1A.535.82 read from T0547.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)A536 (1zh1A)V119 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1zh1A)G125 because S (epsilon) conformation "forbidden" or filtered. T0547 535 :E 1zh1A 118 :Y T0547 537 :IISIN 1zh1A 120 :EVTRV T0547 543 :K 1zh1A 126 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=50913 # 1q9uA.535.81 read from T0547.t2k.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)E535 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q9uA)K79 Warning: unaligning (T0547)S539 (1q9uA)Y83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1q9uA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 536 :AII 1q9uA 80 :LVV T0547 540 :INE 1q9uA 84 :QEN Number of specific fragments extracted= 2 number of extra gaps= 2 total=50915 # 1l8bA.535.123 read from T0547.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)E535 (1l8bA)G151 because Y (epsilon') conformation "forbidden" or filtered. T0547 536 :AIISINEK 1l8bA 152 :AVVNVRAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=50916 # 1p5tA.535.67 read from T0547.t2k.many.frag # found chain 1p5tA in template set Warning: unaligning (T0547)E535 (1p5tA)M68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S539 (1p5tA)E72 because D (zeta) conformation "forbidden" or filtered. T0547 536 :AII 1p5tA 69 :FSF T0547 540 :INEK 1p5tA 73 :AGRR Number of specific fragments extracted= 2 number of extra gaps= 2 total=50918 # 1ujcA.535.132 read from T0547.t2k.many.frag # found chain 1ujcA in template set T0547 535 :EAIISINEK 1ujcA 133 :IASVTLDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=50919 # 1crzA.535.273 read from T0547.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)E535 (1crzA)N280 because E (beta_S) conformation "forbidden" or filtered. T0547 536 :AIISINEK 1crzA 281 :LAFTSDQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=50920 # 1vbvA.535.50 read from T0547.t2k.many.frag # found chain 1vbvA in template set T0547 535 :EAIISINEK 1vbvA 51 :WYHVVMEDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=50921 # 1khcA.535.46 read from T0547.t2k.many.frag # found chain 1khcA in training set T0547 535 :EAIISINEK 1khcA 265 :MRWVQWFGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=50922 # 1k8kC.535.30 read from T0547.t2k.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)E535 (1k8kC)E31 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1k8kC)V32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1k8kC)G39 because S (epsilon) conformation "forbidden" or filtered. T0547 537 :IISINE 1k8kC 33 :HIYEKS Number of specific fragments extracted= 1 number of extra gaps= 2 total=50923 # 1xyiA.535.28 read from T0547.t2k.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)E542 (1xyiA)D36 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. T0547 535 :EAIISIN 1xyiA 29 :AVSFTYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=50924 # 2brfA.535.49 read from T0547.t2k.many.frag # found chain 2brfA in training set T0547 535 :EAIISINEK 2brfA 50 :QVELVADPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=50925 # 1w0pA.535.441 read from T0547.t2k.many.frag # found chain 1w0pA in training set T0547 535 :EAIISINEK 1w0pA 442 :DYELQYSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=50926 # 1kjlA.535.103 read from T0547.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)K543 (1kjlA)A216 because E (beta_S) conformation "forbidden" or filtered. T0547 535 :EAIISINE 1kjlA 208 :HFKVAVND Number of specific fragments extracted= 1 number of extra gaps= 1 total=50927 # 2ffmA.535.59 read from T0547.t2k.many.frag # found chain 2ffmA in template set T0547 535 :EAIISINEK 2ffmA 60 :FISVDKEND Number of specific fragments extracted= 1 number of extra gaps= 0 total=50928 # 1dy5A.535.104 read from T0547.t2k.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N541 (1dy5A)E111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1dy5A)G112 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1dy5A)N113 because D (zeta) conformation "forbidden" or filtered. T0547 535 :EAIISI 1dy5A 105 :HIIVAC Number of specific fragments extracted= 1 number of extra gaps= 1 total=50929 # 1sacA.535.92 read from T0547.t2k.many.frag # found chain 1sacA in template set T0547 535 :EAIISINEK 1sacA 93 :HICVSWESS Number of specific fragments extracted= 1 number of extra gaps= 0 total=50930 # 1m1hA.535.82 read from T0547.t2k.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)N541 (1m1hA)E89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1m1hA)G91 because L (left) conformation "forbidden" or filtered. T0547 535 :EAIISI 1m1hA 83 :VTTFRI T0547 542 :E 1m1hA 90 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=50932 # 2bsdA.535.229 read from T0547.t2k.many.frag # found chain 2bsdA in template set Warning: unaligning (T0547)E535 (2bsdA)S230 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (2bsdA)F231 because Y (epsilon') conformation "forbidden" or filtered. T0547 537 :IISINEK 2bsdA 232 :HIDINPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=50933 # 1ouwA.535.28 read from T0547.t2k.many.frag # found chain 1ouwA in training set T0547 535 :EAIISINEK 1ouwA 30 :QIVISYGGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50934 1x31D expands to /projects/compbio/data/pdb/1x31.pdb.gz 1x31D:# 1x31D.535.65 read from T0547.t2k.many.frag # adding 1x31D to template set # found chain 1x31D in template set T0547 535 :EAIISINEK 1x31D 66 :WFNALRDTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=50935 # 1ssxA.535.63 read from T0547.t2k.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)N541 (1ssxA)T109 because P (beta_P) conformation "forbidden" or filtered. T0547 535 :EAIISI 1ssxA 103 :RAWVSL T0547 542 :EK 1ssxA 110 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=50937 # 1th7A.535.20 read from T0547.t2k.many.frag # found chain 1th7A in training set Warning: unaligning (T0547)E535 (1th7A)L21 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1th7A)N29 because L (left) conformation "forbidden" or filtered. T0547 536 :AIISINE 1th7A 22 :VLVKLKG Number of specific fragments extracted= 1 number of extra gaps= 2 total=50938 # 1xkpC.535.32 read from T0547.t2k.many.frag # found chain 1xkpC in training set Warning: unaligning (T0547)E542 (1xkpC)G40 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xkpC)S41 because G (3-10) conformation "forbidden" or filtered. T0547 535 :EAIISIN 1xkpC 33 :LVMLAPH Number of specific fragments extracted= 1 number of extra gaps= 1 total=50939 # 1g6gA.535.59 read from T0547.t2k.many.frag # found chain 1g6gA in training set T0547 535 :EAIISINEK 1g6gA 88 :HFQILLGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=50940 # 1ud9A.536.213 read from T0547.t2k.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)K543 (1ud9A)Q221 because L (left) conformation "forbidden" or filtered. T0547 536 :AIISINE 1ud9A 214 :VKVAFAD T0547 544 :G 1ud9A 222 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=50942 # 1wv3A.536.126 read from T0547.t2k.many.frag # found chain 1wv3A in training set T0547 536 :AIISINEKG 1wv3A 127 :VRIVHDKNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=50943 # 1ujcA.536.133 read from T0547.t2k.many.frag # found chain 1ujcA in template set Warning: unaligning (T0547)S539 (1ujcA)T137 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1ujcA)D139 because P (beta_P) conformation "forbidden" or filtered. T0547 536 :AII 1ujcA 134 :ASV T0547 540 :I 1ujcA 138 :L T0547 542 :EKG 1ujcA 140 :ESG Number of specific fragments extracted= 3 number of extra gaps= 2 total=50946 # 1x31D.536.66 read from T0547.t2k.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)A536 (1x31D)F67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1x31D)D72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1x31D)S75 because G (3-10) conformation "forbidden" or filtered. T0547 537 :IISI 1x31D 68 :NALR T0547 542 :EK 1x31D 73 :TV Number of specific fragments extracted= 2 number of extra gaps= 3 total=50948 # 1vbvA.536.51 read from T0547.t2k.many.frag # found chain 1vbvA in template set T0547 536 :AIISINEKG 1vbvA 52 :YHVVMEDDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=50949 # 1ok0A.536.20 read from T0547.t2k.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)A536 because of BadResidue code BAD_PEPTIDE at template residue (1ok0A)S21 Warning: unaligning (T0547)G544 (1ok0A)E29 because E (beta_S) conformation "forbidden" or filtered. T0547 537 :IISINEK 1ok0A 22 :QADNGCA Number of specific fragments extracted= 1 number of extra gaps= 2 total=50950 # 1p5tA.536.68 read from T0547.t2k.many.frag # found chain 1p5tA in template set Warning: unaligning (T0547)A536 (1p5tA)F69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1p5tA)G74 because P (beta_P) conformation "forbidden" or filtered. T0547 537 :IISI 1p5tA 70 :SFEA T0547 542 :EKG 1p5tA 75 :RRC Number of specific fragments extracted= 2 number of extra gaps= 2 total=50952 # 1l8bA.536.124 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 536 :AIISINEKG 1l8bA 152 :AVVNVRAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50953 # 1sacA.536.93 read from T0547.t2k.many.frag # found chain 1sacA in template set T0547 536 :AIISINEKG 1sacA 94 :ICVSWESSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=50954 # 1q9uA.536.82 read from T0547.t2k.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)S539 (1q9uA)Y83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1q9uA)T88 because E (beta_S) conformation "forbidden" or filtered. T0547 536 :AII 1q9uA 80 :LVV T0547 540 :INEK 1q9uA 84 :QENG Number of specific fragments extracted= 2 number of extra gaps= 2 total=50956 # 1ze3C.536.139 read from T0547.t2k.many.frag # found chain 1ze3C in template set Warning: unaligning (T0547)A536 (1ze3C)L140 because E (beta_S) conformation "forbidden" or filtered. T0547 537 :IISINEKG 1ze3C 141 :TLINPTPY Number of specific fragments extracted= 1 number of extra gaps= 1 total=50957 # 1xyiA.536.29 read from T0547.t2k.many.frag # found chain 1xyiA in training set T0547 536 :AIISINEKG 1xyiA 30 :VSFTYDDNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50958 # 1w0pA.536.442 read from T0547.t2k.many.frag # found chain 1w0pA in training set T0547 536 :AIISINEKG 1w0pA 443 :YELQYSALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=50959 # 2axwA.536.50 read from T0547.t2k.many.frag # found chain 2axwA in training set T0547 536 :AIISINEKG 2axwA 51 :YVVQSKDGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=50960 # 1khcA.536.47 read from T0547.t2k.many.frag # found chain 1khcA in training set T0547 536 :AIISINEKG 1khcA 266 :RWVQWFGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50961 # 1zh1A.536.83 read from T0547.t2k.many.frag # found chain 1zh1A in template set T0547 536 :AIISINEKG 1zh1A 119 :VEVTRVGDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=50962 # 1ydxA.536.300 read from T0547.t2k.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)E542 (1ydxA)N284 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1ydxA)E286 because G (3-10) conformation "forbidden" or filtered. T0547 536 :AIISIN 1ydxA 278 :IALEPM T0547 543 :K 1ydxA 285 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=50964 # 1dy5A.536.105 read from T0547.t2k.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N541 (1dy5A)E111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 536 :AIISI 1dy5A 106 :IIVAC T0547 542 :EK 1dy5A 112 :GN Number of specific fragments extracted= 2 number of extra gaps= 2 total=50966 # 1tyv.536.523 read from T0547.t2k.many.frag # found chain 1tyv in training set T0547 536 :AIISINEKG 1tyv 648 :KALVKKPNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50967 # 1g6gA.536.60 read from T0547.t2k.many.frag # found chain 1g6gA in training set T0547 536 :AIISINEKG 1g6gA 89 :FQILLGEDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50968 # 2ayh.536.146 read from T0547.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)I537 (2ayh)A148 because Y (epsilon') conformation "forbidden" or filtered. T0547 536 :A 2ayh 147 :Y T0547 538 :ISINEKG 2ayh 149 :FDWQPGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=50970 # 1crzA.536.274 read from T0547.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)N541 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. T0547 536 :AIISI 1crzA 281 :LAFTS T0547 542 :EK 1crzA 287 :QA Number of specific fragments extracted= 2 number of extra gaps= 2 total=50972 # 2bsdA.536.230 read from T0547.t2k.many.frag # found chain 2bsdA in template set T0547 536 :AIISINEKG 2bsdA 231 :FHIDINPNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50973 # 1k3iA.536.431 read from T0547.t2k.many.frag # found chain 1k3iA in training set Warning: unaligning (T0547)N541 (1k3iA)G420 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1k3iA)P422 because P (beta_P) conformation "forbidden" or filtered. T0547 536 :AIISI 1k3iA 415 :HIITL T0547 542 :E 1k3iA 421 :E T0547 544 :G 1k3iA 423 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=50976 # 1ahsA.536.105 read from T0547.t2k.many.frag # found chain 1ahsA in template set T0547 536 :AIISINEKG 1ahsA 231 :VNVGNPGAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=50977 # 1m1hA.536.83 read from T0547.t2k.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)N541 (1m1hA)E89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1m1hA)E92 because E (beta_S) conformation "forbidden" or filtered. T0547 536 :AIISI 1m1hA 84 :TTFRI T0547 542 :EK 1m1hA 90 :NG Number of specific fragments extracted= 2 number of extra gaps= 2 total=50979 # 2brfA.536.50 read from T0547.t2k.many.frag # found chain 2brfA in training set T0547 536 :AIISINEKG 2brfA 51 :VELVADPET Number of specific fragments extracted= 1 number of extra gaps= 0 total=50980 # 1dp4A.536.376 read from T0547.t2k.many.frag # found chain 1dp4A in template set T0547 536 :AIISINEKG 1dp4A 377 :SLWDMDPET Number of specific fragments extracted= 1 number of extra gaps= 0 total=50981 # 1kjlA.536.104 read from T0547.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)E542 (1kjlA)D215 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1kjlA)H217 because P (beta_P) conformation "forbidden" or filtered. T0547 536 :AIISIN 1kjlA 209 :FKVAVN T0547 543 :K 1kjlA 216 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=50983 # 1sz2A.536.152 read from T0547.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0547)A536 (1sz2A)A142 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1sz2A)D148 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1sz2A)K149 because T (delta_L) conformation "forbidden" or filtered. T0547 537 :IISIN 1sz2A 143 :HLVHV T0547 544 :G 1sz2A 150 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=50985 # 1sacA.537.94 read from T0547.t2k.many.frag # found chain 1sacA in template set T0547 537 :IISINEKGY 1sacA 95 :CVSWESSSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=50986 # 1m1hA.537.84 read from T0547.t2k.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)N541 (1m1hA)E89 because Y (epsilon') conformation "forbidden" or filtered. T0547 537 :IISI 1m1hA 85 :TFRI T0547 542 :EKGY 1m1hA 90 :NGEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=50988 # 1x31D.537.67 read from T0547.t2k.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)I538 (1x31D)A69 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1x31D)S75 because G (3-10) conformation "forbidden" or filtered. T0547 537 :I 1x31D 68 :N T0547 539 :SINEK 1x31D 70 :LRDTV T0547 545 :Y 1x31D 76 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=50991 # 1fiqB.537.219 read from T0547.t2k.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. T0547 537 :IISINE 1fiqB 439 :RVLFQP T0547 544 :GY 1fiqB 446 :SM Number of specific fragments extracted= 2 number of extra gaps= 1 total=50993 # 2ayh.537.147 read from T0547.t2k.many.frag # found chain 2ayh in training set T0547 537 :IISINEKGY 2ayh 148 :AFDWQPGYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=50994 1bcpB expands to /projects/compbio/data/pdb/1bcp.pdb.gz 1bcpB:# 1bcpB.537.109 read from T0547.t2k.many.frag # adding 1bcpB to template set # found chain 1bcpB in template set Warning: unaligning (T0547)I537 (1bcpB)R110 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1bcpB)S114 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :ISI 1bcpB 111 :LLS T0547 542 :EKGY 1bcpB 115 :TNSR Number of specific fragments extracted= 2 number of extra gaps= 2 total=50996 # 1wckA.537.189 read from T0547.t2k.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)K543 (1wckA)L196 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1wckA)G197 because Y (epsilon') conformation "forbidden" or filtered. T0547 537 :IISINE 1wckA 190 :EVIVTG T0547 545 :Y 1wckA 198 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=50998 # 1w0pA.537.443 read from T0547.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)S539 (1w0pA)Q446 because D (zeta) conformation "forbidden" or filtered. T0547 537 :II 1w0pA 444 :EL T0547 540 :INEKGY 1w0pA 447 :YSALNH Number of specific fragments extracted= 2 number of extra gaps= 1 total=51000 # 1g6gA.537.61 read from T0547.t2k.many.frag # found chain 1g6gA in training set T0547 537 :IISINEKGY 1g6gA 90 :QILLGEDGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=51001 # 1l8bA.537.125 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 537 :IISINEKGY 1l8bA 153 :VVNVRAKGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=51002 # 1ud9A.537.214 read from T0547.t2k.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)N541 (1ud9A)A219 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1ud9A)Q221 because L (left) conformation "forbidden" or filtered. T0547 537 :IISI 1ud9A 215 :KVAF T0547 542 :E 1ud9A 220 :D T0547 544 :GY 1ud9A 222 :KP Number of specific fragments extracted= 3 number of extra gaps= 2 total=51005 1wruA expands to /projects/compbio/data/pdb/1wru.pdb.gz 1wruA:# 1wruA.537.317 read from T0547.t2k.many.frag # adding 1wruA to template set # found chain 1wruA in template set Warning: unaligning (T0547)N541 (1wruA)N322 because Y (epsilon') conformation "forbidden" or filtered. T0547 537 :IISI 1wruA 318 :TLIL T0547 542 :EKGY 1wruA 323 :DQDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=51007 # 1ujcA.537.134 read from T0547.t2k.many.frag # found chain 1ujcA in template set Warning: unaligning (T0547)N541 (1ujcA)D139 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1ujcA)S141 because G (3-10) conformation "forbidden" or filtered. T0547 537 :IISI 1ujcA 135 :SVTL T0547 542 :E 1ujcA 140 :E T0547 544 :GY 1ujcA 142 :GN Number of specific fragments extracted= 3 number of extra gaps= 2 total=51010 # 2nlrA.537.30 read from T0547.t2k.many.frag # found chain 2nlrA in training set T0547 537 :IISINEKGY 2nlrA 31 :CVTATDTGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=51011 # 1xyiA.537.30 read from T0547.t2k.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)I538 (1xyiA)F32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. T0547 537 :I 1xyiA 31 :S T0547 539 :SINE 1xyiA 33 :TYDD T0547 544 :GY 1xyiA 38 :GK Number of specific fragments extracted= 3 number of extra gaps= 2 total=51014 # 1vbvA.537.52 read from T0547.t2k.many.frag # found chain 1vbvA in template set Warning: unaligning (T0547)Y545 (1vbvA)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 537 :IISINEKG 1vbvA 53 :HVVMEDDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=51015 # 1zh1A.537.84 read from T0547.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E542 (1zh1A)G125 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1zh1A)F127 because E (beta_S) conformation "forbidden" or filtered. T0547 537 :IISIN 1zh1A 120 :EVTRV T0547 543 :K 1zh1A 126 :D T0547 545 :Y 1zh1A 128 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=51018 # 1i0vA.537.76 read from T0547.t2k.many.frag # found chain 1i0vA in training set T0547 537 :IISINEKGY 1i0vA 77 :RVVFNENNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=51019 # 1q9uA.537.83 read from T0547.t2k.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)E542 (1q9uA)N86 because L (left) conformation "forbidden" or filtered. T0547 537 :IISIN 1q9uA 81 :VVYQE T0547 543 :KGY 1q9uA 87 :GTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=51021 # 1ssxA.537.65 read from T0547.t2k.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)N541 (1ssxA)T109 because P (beta_P) conformation "forbidden" or filtered. T0547 537 :IISI 1ssxA 105 :WVSL T0547 542 :EKGY 1ssxA 110 :SAQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=51023 # 1dy5A.537.106 read from T0547.t2k.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N541 (1dy5A)E111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 537 :IISI 1dy5A 107 :IVAC T0547 542 :EK 1dy5A 112 :GN T0547 545 :Y 1dy5A 115 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=51026 # 1hf2A.537.187 read from T0547.t2k.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)E542 (1hf2A)G193 because S (epsilon) conformation "forbidden" or filtered. T0547 537 :IISIN 1hf2A 188 :IAHVK T0547 543 :KGY 1hf2A 194 :NRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=51028 # 1ckmA.537.280 read from T0547.t2k.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)N541 (1ckmA)A285 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1ckmA)D286 because L (left) conformation "forbidden" or filtered. T0547 537 :IISI 1ckmA 281 :ECGF T0547 543 :KGY 1ckmA 287 :GTW Number of specific fragments extracted= 2 number of extra gaps= 1 total=51030 # 1wraA.537.287 read from T0547.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0547)I537 because of BadResidue code BAD_PEPTIDE in next template residue (1wraA)F315 Warning: unaligning (T0547)I538 because of BadResidue code BAD_PEPTIDE at template residue (1wraA)F315 Warning: unaligning (T0547)N541 (1wraA)R318 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SI 1wraA 316 :DI T0547 542 :EKGY 1wraA 319 :KDGF Number of specific fragments extracted= 2 number of extra gaps= 2 total=51032 1ospO expands to /projects/compbio/data/pdb/1osp.pdb.gz 1ospO:# 1ospO.537.70 read from T0547.t2k.many.frag # adding 1ospO to template set # found chain 1ospO in template set T0547 537 :IISINEKGY 1ospO 87 :KLTISDDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=51033 # 1sz2A.537.153 read from T0547.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0547)K543 (1sz2A)K149 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1sz2A)R150 because E (beta_S) conformation "forbidden" or filtered. T0547 537 :IISINE 1sz2A 143 :HLVHVD T0547 545 :Y 1sz2A 151 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=51035 # 2mcm.537.72 read from T0547.t2k.many.frag # found chain 2mcm in training set T0547 537 :IISINEKGY 2mcm 73 :QAVVGADGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51036 # 1pea.537.341 read from T0547.t2k.many.frag # found chain 1pea in template set T0547 537 :IISINEKGY 1pea 342 :IAEIDARGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51037 # 1dmhA.537.180 read from T0547.t2k.many.frag # found chain 1dmhA in training set T0547 537 :IISINEKGY 1dmhA 181 :SIITDENGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=51038 1of5A expands to /projects/compbio/data/pdb/1of5.pdb.gz 1of5A:# 1of5A.537.182 read from T0547.t2k.many.frag # adding 1of5A to template set # found chain 1of5A in template set Warning: unaligning (T0547)N541 (1of5A)M454 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1of5A)N455 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1of5A)N456 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1of5A)S457 because Y (epsilon') conformation "forbidden" or filtered. T0547 537 :IISI 1of5A 450 :VIVP T0547 545 :Y 1of5A 458 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=51040 # 1fiqB.538.220 read from T0547.t2k.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)N541 (1fiqB)Q443 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1fiqB)Q448 because P (beta_P) conformation "forbidden" or filtered. T0547 538 :ISI 1fiqB 440 :VLF T0547 542 :E 1fiqB 444 :P T0547 544 :GY 1fiqB 446 :SM Number of specific fragments extracted= 3 number of extra gaps= 3 total=51043 # 1sacA.538.95 read from T0547.t2k.many.frag # found chain 1sacA in template set Warning: unaligning (T0547)N541 (1sacA)E99 because E (beta_S) conformation "forbidden" or filtered. T0547 538 :ISI 1sacA 96 :VSW T0547 542 :EKGYE 1sacA 100 :SSSGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=51045 # 1hf2A.538.188 read from T0547.t2k.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)S539 (1hf2A)H190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1hf2A)G193 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1hf2A)N194 because G (3-10) conformation "forbidden" or filtered. T0547 538 :I 1hf2A 189 :A T0547 540 :IN 1hf2A 191 :VK T0547 544 :GYE 1hf2A 195 :RIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=51048 # 1bcpB.538.110 read from T0547.t2k.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)N541 (1bcpB)S114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1bcpB)T115 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1bcpB)N116 because L (left) conformation "forbidden" or filtered. T0547 538 :ISI 1bcpB 111 :LLS T0547 544 :GYE 1bcpB 117 :SRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=51050 # 1xyiA.538.31 read from T0547.t2k.many.frag # found chain 1xyiA in training set T0547 538 :ISINEKGYE 1xyiA 32 :FTYDDNGKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51051 # 1x31D.538.68 read from T0547.t2k.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)N541 (1x31D)D72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1x31D)S75 because G (3-10) conformation "forbidden" or filtered. T0547 538 :ISI 1x31D 69 :ALR T0547 542 :EK 1x31D 73 :TV T0547 545 :YE 1x31D 76 :YE Number of specific fragments extracted= 3 number of extra gaps= 2 total=51054 # 1ckmA.538.281 read from T0547.t2k.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)E542 (1ckmA)D286 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1ckmA)T288 because E (beta_S) conformation "forbidden" or filtered. T0547 538 :ISIN 1ckmA 282 :CGFA T0547 543 :K 1ckmA 287 :G T0547 545 :YE 1ckmA 289 :WK Number of specific fragments extracted= 3 number of extra gaps= 2 total=51057 # 2erfA.538.105 read from T0547.t2k.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)N541 (2erfA)T115 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (2erfA)Q117 because L (left) conformation "forbidden" or filtered. T0547 538 :ISI 2erfA 112 :LSL T0547 542 :E 2erfA 116 :V T0547 544 :GYE 2erfA 118 :GKQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=51060 # 1q9uA.538.84 read from T0547.t2k.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)S539 (1q9uA)Y83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1q9uA)T88 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1q9uA)K90 because E (beta_S) conformation "forbidden" or filtered. T0547 538 :I 1q9uA 82 :V T0547 540 :INEK 1q9uA 84 :QENG T0547 545 :Y 1q9uA 89 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=51063 # 1l8bA.538.126 read from T0547.t2k.many.frag # found chain 1l8bA in training set T0547 538 :ISINEKGYE 1l8bA 154 :VNVRAKGDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=51064 # 2ayh.538.148 read from T0547.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)G544 (2ayh)Y155 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :ISINEK 2ayh 149 :FDWQPG T0547 545 :YE 2ayh 156 :IK Number of specific fragments extracted= 2 number of extra gaps= 1 total=51066 # 1sz2A.538.154 read from T0547.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0547)K543 (1sz2A)K149 because T (delta_L) conformation "forbidden" or filtered. T0547 538 :ISINE 1sz2A 144 :LVHVD T0547 544 :GYE 1sz2A 150 :RWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51068 # 1zh1A.538.85 read from T0547.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E542 (1zh1A)G125 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1zh1A)D126 because G (3-10) conformation "forbidden" or filtered. T0547 538 :ISIN 1zh1A 121 :VTRV T0547 544 :GYE 1zh1A 127 :FHY Number of specific fragments extracted= 2 number of extra gaps= 1 total=51070 1ry9A expands to /projects/compbio/data/pdb/1ry9.pdb.gz 1ry9A:# 1ry9A.538.56 read from T0547.t2k.many.frag # adding 1ry9A to template set # found chain 1ry9A in template set Warning: unaligning (T0547)S539 (1ry9A)A46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1ry9A)E50 because L (left) conformation "forbidden" or filtered. T0547 538 :I 1ry9A 45 :I T0547 540 :INE 1ry9A 47 :LVN T0547 544 :GYE 1ry9A 51 :QVM Number of specific fragments extracted= 3 number of extra gaps= 2 total=51073 # 1of5A.538.183 read from T0547.t2k.many.frag # found chain 1of5A in template set Warning: unaligning (T0547)N541 (1of5A)M454 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1of5A)N455 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1of5A)S457 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :ISI 1of5A 451 :IVP T0547 543 :K 1of5A 456 :N T0547 545 :YE 1of5A 458 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=51076 # 2ai4A.538.17 read from T0547.t2k.many.frag # found chain 2ai4A in training set Warning: unaligning (T0547)E542 (2ai4A)N19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2ai4A)E21 because E (beta_S) conformation "forbidden" or filtered. T0547 538 :ISIN 2ai4A 15 :VTLE T0547 543 :K 2ai4A 20 :G T0547 545 :YE 2ai4A 22 :PV Number of specific fragments extracted= 3 number of extra gaps= 2 total=51079 # 1xipA.538.250 read from T0547.t2k.many.frag # found chain 1xipA in template set T0547 538 :ISINEKGYE 1xipA 250 :IKHIDGSAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=51080 # 1dy5A.538.107 read from T0547.t2k.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 538 :ISINEK 1dy5A 108 :VACEGN T0547 545 :YE 1dy5A 115 :YV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51082 # 1q9jA.538.380 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)I538 (1q9jA)C381 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1q9jA)A385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1q9jA)G386 because L (left) conformation "forbidden" or filtered. T0547 539 :SIN 1q9jA 382 :AVY T0547 544 :GYE 1q9jA 387 :QLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=51084 2f86B expands to /projects/compbio/data/pdb/2f86.pdb.gz 2f86B:# 2f86B.538.115 read from T0547.t2k.many.frag # adding 2f86B to template set # found chain 2f86B in template set Warning: unaligning (T0547)E542 (2f86B)Q459 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (2f86B)G460 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2f86B)R461 because P (beta_P) conformation "forbidden" or filtered. T0547 538 :ISIN 2f86B 455 :WSKK T0547 545 :YE 2f86B 462 :WV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51086 # 1wraA.538.288 read from T0547.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0547)I538 because of BadResidue code BAD_PEPTIDE at template residue (1wraA)F315 Warning: unaligning (T0547)N541 (1wraA)R318 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SI 1wraA 316 :DI T0547 542 :EKGYE 1wraA 319 :KDGFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=51088 # 1m1hA.538.85 read from T0547.t2k.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)K543 (1m1hA)G91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1m1hA)K94 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :ISINE 1m1hA 86 :FRIEN T0547 544 :GY 1m1hA 92 :EV Number of specific fragments extracted= 2 number of extra gaps= 2 total=51090 # 1w0pA.538.444 read from T0547.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)G544 (1w0pA)N451 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1w0pA)T453 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :ISINEK 1w0pA 445 :LQYSAL T0547 545 :Y 1w0pA 452 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=51092 # 1wruA.538.318 read from T0547.t2k.many.frag # found chain 1wruA in template set Warning: unaligning (T0547)Y545 (1wruA)G326 because S (epsilon) conformation "forbidden" or filtered. T0547 538 :ISINEKG 1wruA 319 :LILNDQD T0547 546 :E 1wruA 327 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=51094 # 1ty9A.538.207 read from T0547.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0547)E546 (1ty9A)N216 because P (beta_P) conformation "forbidden" or filtered. T0547 538 :ISINEKGY 1ty9A 208 :YDRSDTGW Number of specific fragments extracted= 1 number of extra gaps= 1 total=51095 # 1wckA.538.190 read from T0547.t2k.many.frag # found chain 1wckA in training set T0547 538 :ISINEKGYE 1wckA 191 :VIVTGLGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=51096 # 2nlrA.538.31 read from T0547.t2k.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)E546 (2nlrA)R40 because E (beta_S) conformation "forbidden" or filtered. T0547 538 :ISINEKGY 2nlrA 32 :VTATDTGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=51097 # 1u9iA.538.469 read from T0547.t2k.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)N541 (1u9iA)S473 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :ISI 1u9iA 470 :FMI T0547 542 :EKGYE 1u9iA 474 :DKGPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=51099 # 1mixA.538.143 read from T0547.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)E546 (1mixA)E346 because P (beta_P) conformation "forbidden" or filtered. T0547 538 :ISINEKGY 1mixA 338 :MRVDEKTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=51100 # 2bvlA.538.374 read from T0547.t2k.many.frag # found chain 2bvlA in template set Warning: unaligning (T0547)G544 (2bvlA)G381 because S (epsilon) conformation "forbidden" or filtered. T0547 538 :ISINEK 2bvlA 375 :IAFNSK T0547 545 :YE 2bvlA 382 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=51102 # 1fiqB.539.221 read from T0547.t2k.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. T0547 539 :SINE 1fiqB 441 :LFQP T0547 544 :GYEV 1fiqB 446 :SMQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51104 # 1bcpB.539.111 read from T0547.t2k.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)N541 (1bcpB)S114 because Y (epsilon') conformation "forbidden" or filtered. T0547 539 :SI 1bcpB 112 :LS T0547 542 :EKGYEV 1bcpB 115 :TNSRLC Number of specific fragments extracted= 2 number of extra gaps= 1 total=51106 # 1hf2A.539.189 read from T0547.t2k.many.frag # found chain 1hf2A in template set T0547 539 :SINEKGYEV 1hf2A 190 :HVKGNRIVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=51107 # 1ckmA.539.282 read from T0547.t2k.many.frag # found chain 1ckmA in template set T0547 539 :SINEKGYEV 1ckmA 283 :GFADGTWKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=51108 # 1zh1A.539.86 read from T0547.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)G544 (1zh1A)F127 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SINEK 1zh1A 122 :TRVGD T0547 545 :YEV 1zh1A 128 :HYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51110 # 1of5A.539.184 read from T0547.t2k.many.frag # found chain 1of5A in template set Warning: unaligning (T0547)S539 (1of5A)V452 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1of5A)S457 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1of5A)V458 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :INEK 1of5A 453 :PMNN T0547 546 :EV 1of5A 459 :II Number of specific fragments extracted= 2 number of extra gaps= 2 total=51112 # 1sz2A.539.155 read from T0547.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0547)E542 (1sz2A)D148 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1sz2A)R150 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SIN 1sz2A 145 :VHV T0547 543 :K 1sz2A 149 :K T0547 545 :YEV 1sz2A 151 :WVS Number of specific fragments extracted= 3 number of extra gaps= 2 total=51115 # 2f86B.539.116 read from T0547.t2k.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)K543 (2f86B)G460 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2f86B)R461 because P (beta_P) conformation "forbidden" or filtered. T0547 539 :SINE 2f86B 456 :SKKQ T0547 545 :YEV 2f86B 462 :WVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=51117 # 1u9iA.539.470 read from T0547.t2k.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)N541 (1u9iA)S473 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1u9iA)D478 because D (zeta) conformation "forbidden" or filtered. T0547 539 :SI 1u9iA 471 :MI T0547 542 :EKGY 1u9iA 474 :DKGP T0547 547 :V 1u9iA 479 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=51120 # 2ai4A.539.18 read from T0547.t2k.many.frag # found chain 2ai4A in training set Warning: unaligning (T0547)E542 (2ai4A)N19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (2ai4A)G20 because T (delta_L) conformation "forbidden" or filtered. T0547 539 :SIN 2ai4A 16 :TLE T0547 544 :GYEV 2ai4A 21 :EPVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=51122 # 1q9uA.539.85 read from T0547.t2k.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)E542 (1q9uA)N86 because L (left) conformation "forbidden" or filtered. T0547 539 :SIN 1q9uA 83 :YQE T0547 543 :KGYEV 1q9uA 87 :GTTKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=51124 # 1sacA.539.96 read from T0547.t2k.many.frag # found chain 1sacA in template set Warning: unaligning (T0547)E546 (1sacA)I104 because P (beta_P) conformation "forbidden" or filtered. T0547 539 :SINEKGY 1sacA 97 :SWESSSG T0547 547 :V 1sacA 105 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=51126 # 1q9jA.539.381 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)S539 (1q9jA)A382 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1q9jA)A385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1q9jA)G386 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1q9jA)Q387 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :IN 1q9jA 383 :VY T0547 545 :YEV 1q9jA 388 :LII Number of specific fragments extracted= 2 number of extra gaps= 2 total=51128 # 1ry9A.539.57 read from T0547.t2k.many.frag # found chain 1ry9A in template set Warning: unaligning (T0547)S539 (1ry9A)A46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1ry9A)N49 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1ry9A)Q51 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :IN 1ry9A 47 :LV T0547 543 :K 1ry9A 50 :E T0547 545 :YEV 1ry9A 52 :VML Number of specific fragments extracted= 3 number of extra gaps= 3 total=51131 # 1l8bA.539.127 read from T0547.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)N541 (1l8bA)R157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1l8bA)K162 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SI 1l8bA 155 :NV T0547 542 :EKGY 1l8bA 158 :AKGD T0547 547 :V 1l8bA 163 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=51134 # 1ty9A.539.208 read from T0547.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0547)G544 (1ty9A)G214 because Y (epsilon') conformation "forbidden" or filtered. T0547 539 :SINEK 1ty9A 209 :DRSDT T0547 545 :YEV 1ty9A 215 :WNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51136 # 1uoyA.539.36 read from T0547.t2k.many.frag # found chain 1uoyA in training set Warning: unaligning (T0547)E542 (1uoyA)G40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1uoyA)T44 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SIN 1uoyA 37 :ECK T0547 543 :KGY 1uoyA 41 :GKW T0547 547 :V 1uoyA 45 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=51139 # 1xyiA.539.32 read from T0547.t2k.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1xyiA)T40 because P (beta_P) conformation "forbidden" or filtered. T0547 539 :SINE 1xyiA 33 :TYDD T0547 544 :GY 1xyiA 38 :GK T0547 547 :V 1xyiA 41 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=51142 # 2bvlA.539.375 read from T0547.t2k.many.frag # found chain 2bvlA in template set T0547 539 :SINEKGYEV 2bvlA 376 :AFNSKGIIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=51143 # 1xipA.539.251 read from T0547.t2k.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)E542 (1xipA)D254 because L (left) conformation "forbidden" or filtered. T0547 539 :SIN 1xipA 251 :KHI T0547 543 :KGYEV 1xipA 255 :GSASF Number of specific fragments extracted= 2 number of extra gaps= 1 total=51145 1vjlA expands to /projects/compbio/data/pdb/1vjl.pdb.gz 1vjlA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vjlA.539.90 read from T0547.t2k.many.frag # adding 1vjlA to template set # found chain 1vjlA in template set T0547 539 :SINEKGYEV 1vjlA 79 :SLKDNTFYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51146 # 1mixA.539.144 read from T0547.t2k.many.frag # found chain 1mixA in training set T0547 539 :SINEKGYEV 1mixA 339 :RVDEKTKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51147 # 1x31D.539.69 read from T0547.t2k.many.frag # found chain 1x31D in template set T0547 539 :SINEKGYEV 1x31D 70 :LRDTVSYEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=51148 # 1m1hA.539.86 read from T0547.t2k.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)K543 (1m1hA)G91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1m1hA)E92 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SINE 1m1hA 87 :RIEN T0547 545 :YEV 1m1hA 93 :VKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51150 # 2nlrA.539.32 read from T0547.t2k.many.frag # found chain 2nlrA in training set T0547 539 :SINEKGYEV 2nlrA 33 :TATDTGFRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51151 # 1dy5A.539.108 read from T0547.t2k.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N541 (1dy5A)E111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 539 :SI 1dy5A 109 :AC T0547 542 :EK 1dy5A 112 :GN T0547 545 :YEV 1dy5A 115 :YVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=51154 # 1bupA.539.210 read from T0547.t2k.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)E542 (1bupA)D214 because L (left) conformation "forbidden" or filtered. T0547 539 :SIN 1bupA 211 :TIE T0547 543 :KGYEV 1bupA 215 :GIFEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51156 1zghA expands to /projects/compbio/data/pdb/1zgh.pdb.gz 1zghA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zghA.539.240 read from T0547.t2k.many.frag # adding 1zghA to template set # found chain 1zghA in template set Warning: unaligning (T0547)G544 (1zghA)K216 because Y (epsilon') conformation "forbidden" or filtered. T0547 539 :SINEK 1zghA 211 :SMKNG T0547 545 :YEV 1zghA 217 :IIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=51158 # 2ayh.539.149 read from T0547.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)K543 (2ayh)G154 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2ayh)Y155 because Y (epsilon') conformation "forbidden" or filtered. T0547 539 :SINE 2ayh 150 :DWQP T0547 545 :YEV 2ayh 156 :IKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=51160 2a74A expands to /projects/compbio/data/pdb/2a74.pdb.gz 2a74A:# 2a74A.539.563 read from T0547.t2k.many.frag # adding 2a74A to template set # found chain 2a74A in template set Warning: unaligning (T0547)N541 (2a74A)D566 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2a74A)A569 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (2a74A)V571 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SI 2a74A 564 :EG T0547 542 :EK 2a74A 567 :HG T0547 545 :Y 2a74A 570 :R T0547 547 :V 2a74A 572 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=51164 # 1zh1A.540.87 read from T0547.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E542 (1zh1A)G125 because S (epsilon) conformation "forbidden" or filtered. T0547 540 :IN 1zh1A 123 :RV T0547 543 :KGYEVE 1zh1A 126 :DFHYVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=51166 # 1bcpB.540.112 read from T0547.t2k.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)N541 (1bcpB)S114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1bcpB)N116 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1bcpB)S117 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :I 1bcpB 113 :S T0547 542 :E 1bcpB 115 :T T0547 545 :YEVE 1bcpB 118 :RLCA Number of specific fragments extracted= 3 number of extra gaps= 2 total=51169 1s3sG expands to /projects/compbio/data/pdb/1s3s.pdb.gz 1s3sG:# 1s3sG.540.58 read from T0547.t2k.many.frag # adding 1s3sG to template set # found chain 1s3sG in template set T0547 540 :INEKGYEVE 1s3sG 302 :LADGGRLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=51170 # 1q9jA.540.382 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)E542 (1q9jA)A385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1q9jA)E391 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :IN 1q9jA 383 :VY T0547 543 :KGYEV 1q9jA 386 :GQLII Number of specific fragments extracted= 2 number of extra gaps= 2 total=51172 # 1fiqB.540.222 read from T0547.t2k.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. T0547 540 :INE 1fiqB 442 :FQP T0547 544 :GYEVE 1fiqB 446 :SMQVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=51174 # 1of5A.540.185 read from T0547.t2k.many.frag # found chain 1of5A in template set Warning: unaligning (T0547)K543 (1of5A)N456 because L (left) conformation "forbidden" or filtered. T0547 540 :INE 1of5A 453 :PMN T0547 544 :GYEVE 1of5A 457 :SVIIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=51176 # 1m1hA.540.87 read from T0547.t2k.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)K543 (1m1hA)G91 because L (left) conformation "forbidden" or filtered. T0547 540 :INE 1m1hA 88 :IEN T0547 544 :GYEVE 1m1hA 92 :EVKVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51178 # 1hf2A.540.190 read from T0547.t2k.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)E542 (1hf2A)G193 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1hf2A)N194 because G (3-10) conformation "forbidden" or filtered. T0547 540 :IN 1hf2A 191 :VK T0547 544 :GYEVE 1hf2A 195 :RIVIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=51180 # 1u9iA.540.471 read from T0547.t2k.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)N541 (1u9iA)S473 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :I 1u9iA 472 :I T0547 542 :EKGYEVE 1u9iA 474 :DKGPDIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=51182 # 2f86B.540.117 read from T0547.t2k.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)E542 (2f86B)Q459 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2f86B)R461 because P (beta_P) conformation "forbidden" or filtered. T0547 540 :IN 2f86B 457 :KK T0547 543 :K 2f86B 460 :G T0547 545 :YEVE 2f86B 462 :WVCV Number of specific fragments extracted= 3 number of extra gaps= 2 total=51185 # 1mixA.540.145 read from T0547.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)Y545 (1mixA)K345 because T (delta_L) conformation "forbidden" or filtered. T0547 540 :INEKG 1mixA 340 :VDEKT T0547 546 :EVE 1mixA 346 :EVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=51187 # 1ckmA.540.283 read from T0547.t2k.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)E542 (1ckmA)D286 because L (left) conformation "forbidden" or filtered. T0547 540 :IN 1ckmA 284 :FA T0547 543 :KGYEVE 1ckmA 287 :GTWKYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=51189 # 1vjlA.540.91 read from T0547.t2k.many.frag # found chain 1vjlA in template set Warning: unaligning (T0547)E542 (1vjlA)D82 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1vjlA)N83 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1vjlA)Y86 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :IN 1vjlA 80 :LK T0547 544 :GY 1vjlA 84 :TF T0547 547 :VE 1vjlA 87 :AT Number of specific fragments extracted= 3 number of extra gaps= 2 total=51192 # 2nlrA.540.33 read from T0547.t2k.many.frag # found chain 2nlrA in training set T0547 540 :INEKGYEVE 2nlrA 34 :ATDTGFRVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51193 # 2ai4A.540.19 read from T0547.t2k.many.frag # found chain 2ai4A in training set Warning: unaligning (T0547)E542 (2ai4A)N19 because L (left) conformation "forbidden" or filtered. T0547 540 :IN 2ai4A 17 :LE T0547 543 :KGYEVE 2ai4A 20 :GEPVFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=51195 # 1uoyA.540.37 read from T0547.t2k.many.frag # found chain 1uoyA in training set Warning: unaligning (T0547)E542 (1uoyA)G40 because L (left) conformation "forbidden" or filtered. T0547 540 :IN 1uoyA 38 :CK T0547 543 :KGYEVE 1uoyA 41 :GKWTEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51197 # 2bvlA.540.376 read from T0547.t2k.many.frag # found chain 2bvlA in template set Warning: unaligning (T0547)N541 (2bvlA)N378 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (2bvlA)I383 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :I 2bvlA 377 :F T0547 542 :EKGY 2bvlA 379 :SKGI T0547 547 :VE 2bvlA 384 :NQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=51200 # 1sacA.540.97 read from T0547.t2k.many.frag # found chain 1sacA in template set Warning: unaligning (T0547)E548 (1sacA)E106 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :INEKGYEV 1sacA 98 :WESSSGIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=51201 # 1x31D.540.70 read from T0547.t2k.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G544 (1x31D)S75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1x31D)E77 because P (beta_P) conformation "forbidden" or filtered. T0547 540 :INEK 1x31D 71 :RDTV T0547 545 :Y 1x31D 76 :Y T0547 547 :VE 1x31D 78 :FK Number of specific fragments extracted= 3 number of extra gaps= 2 total=51204 # 1xyiA.540.33 read from T0547.t2k.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)I540 (1xyiA)Y34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1xyiA)T40 because P (beta_P) conformation "forbidden" or filtered. T0547 541 :NE 1xyiA 35 :DD T0547 544 :GY 1xyiA 38 :GK T0547 547 :VE 1xyiA 41 :GR Number of specific fragments extracted= 3 number of extra gaps= 3 total=51207 # 1zghA.540.241 read from T0547.t2k.many.frag # found chain 1zghA in template set Warning: unaligning (T0547)K543 (1zghA)G215 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1zghA)K216 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :INE 1zghA 212 :MKN T0547 545 :YEVE 1zghA 217 :IIAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=51209 # 1dy5A.540.109 read from T0547.t2k.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N541 (1dy5A)E111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1dy5A)N113 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 540 :I 1dy5A 110 :C T0547 542 :E 1dy5A 112 :G T0547 545 :YEVE 1dy5A 115 :YVPV Number of specific fragments extracted= 3 number of extra gaps= 2 total=51212 # 1mk0A.540.9 read from T0547.t2k.many.frag # found chain 1mk0A in training set T0547 540 :INEKGYEVE 1mk0A 10 :NTLNNKVYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51213 # 1ty9A.540.209 read from T0547.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0547)E548 (1ty9A)R218 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :INEKGYEV 1ty9A 210 :RSDTGWNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=51214 1t77A expands to /projects/compbio/data/pdb/1t77.pdb.gz 1t77A:# 1t77A.540.81 read from T0547.t2k.many.frag # adding 1t77A to template set # found chain 1t77A in template set Warning: unaligning (T0547)K543 (1t77A)R2160 because T (delta_L) conformation "forbidden" or filtered. T0547 540 :INE 1t77A 2157 :MAN T0547 544 :GYEVE 1t77A 2161 :VAVMF Number of specific fragments extracted= 2 number of extra gaps= 1 total=51216 # 1zxuA.540.160 read from T0547.t2k.many.frag # found chain 1zxuA in training set Warning: unaligning (T0547)K543 (1zxuA)S164 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1zxuA)A169 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :INE 1zxuA 161 :AGE T0547 544 :GYEV 1zxuA 165 :DAIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=51218 1g1kA expands to /projects/compbio/data/pdb/1g1k.pdb.gz 1g1kA:# 1g1kA.540.41 read from T0547.t2k.many.frag # adding 1g1kA to template set # found chain 1g1kA in template set Warning: unaligning (T0547)E546 (1g1kA)E49 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :INEKGY 1g1kA 43 :YDASLL T0547 547 :VE 1g1kA 50 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51220 # 1l8bA.540.128 read from T0547.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)E546 (1l8bA)K162 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :INEKGY 1l8bA 156 :VRAKGD T0547 547 :VE 1l8bA 163 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=51222 # 1vqoN.540.50 read from T0547.t2k.many.frag # found chain 1vqoN in template set T0547 540 :INEKGYEVE 1vqoN 50 :LGPNGDDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51223 # 1sz2A.540.156 read from T0547.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0547)E542 (1sz2A)D148 because L (left) conformation "forbidden" or filtered. T0547 540 :IN 1sz2A 146 :HV T0547 543 :KGYEVE 1sz2A 149 :KRWVSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=51225 # 1s3sG.541.59 read from T0547.t2k.many.frag # found chain 1s3sG in template set T0547 541 :NEKGYEVEG 1s3sG 303 :ADGGRLVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=51226 # 1bcpB.541.113 read from T0547.t2k.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)N541 (1bcpB)S114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1bcpB)T115 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1bcpB)S117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1bcpB)V122 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :K 1bcpB 116 :N T0547 545 :YEVE 1bcpB 118 :RLCA Number of specific fragments extracted= 2 number of extra gaps= 3 total=51228 # 1x31D.541.71 read from T0547.t2k.many.frag # found chain 1x31D in template set T0547 541 :NEKGYEVEG 1x31D 72 :DTVSYEFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51229 # 1m1hA.541.88 read from T0547.t2k.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)G544 (1m1hA)E92 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1m1hA)K94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1m1hA)E97 because Y (epsilon') conformation "forbidden" or filtered. T0547 541 :NEK 1m1hA 89 :ENG T0547 545 :Y 1m1hA 93 :V T0547 547 :VE 1m1hA 95 :VV Number of specific fragments extracted= 3 number of extra gaps= 3 total=51232 # 2nlrA.541.34 read from T0547.t2k.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)G549 (2nlrA)Q43 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NEKGYEVE 2nlrA 35 :TDTGFRVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=51233 # 1zh1A.541.88 read from T0547.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E542 (1zh1A)G125 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1zh1A)F127 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :N 1zh1A 124 :V T0547 543 :K 1zh1A 126 :D T0547 545 :YEVEG 1zh1A 128 :HYVTG Number of specific fragments extracted= 3 number of extra gaps= 2 total=51236 # 1xyiA.541.34 read from T0547.t2k.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)E546 (1xyiA)T40 because P (beta_P) conformation "forbidden" or filtered. T0547 541 :NEKGY 1xyiA 35 :DDNGK T0547 547 :VEG 1xyiA 41 :GRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=51238 # 1u9iA.541.472 read from T0547.t2k.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)N541 (1u9iA)S473 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :EKGYEVEG 1u9iA 474 :DKGPDIKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=51239 # 1vqoN.541.51 read from T0547.t2k.many.frag # found chain 1vqoN in template set T0547 541 :NEKGYEVEG 1vqoN 51 :GPNGDDTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51240 # 1g1kA.541.42 read from T0547.t2k.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)E546 (1g1kA)E49 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NEKGY 1g1kA 44 :DASLL T0547 547 :VEG 1g1kA 50 :VVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=51242 # 1fiqB.541.223 read from T0547.t2k.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)G549 (1fiqB)E451 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NEKGYEVE 1fiqB 443 :QPGSMQVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=51243 # 1mixA.541.146 read from T0547.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)G549 (1mixA)Q349 because Y (epsilon') conformation "forbidden" or filtered. T0547 541 :NEKGYEVE 1mixA 341 :DEKTKEVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=51244 # 1q9jA.541.383 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)N541 (1q9jA)Y384 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1q9jA)A385 because L (left) conformation "forbidden" or filtered. T0547 543 :KGYEVEG 1q9jA 386 :GQLIIEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=51245 1l1dA expands to /projects/compbio/data/pdb/1l1d.pdb.gz 1l1dA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 945, because occupancy 0.480 <= existing 0.480 in 1l1dA Skipped atom 947, because occupancy 0.480 <= existing 0.480 in 1l1dA Skipped atom 949, because occupancy 0.480 <= existing 0.480 in 1l1dA Skipped atom 951, because occupancy 0.480 <= existing 0.480 in 1l1dA Skipped atom 953, because occupancy 0.480 <= existing 0.480 in 1l1dA Skipped atom 955, because occupancy 0.480 <= existing 0.480 in 1l1dA Skipped atom 982, because occupancy 0.390 <= existing 0.580 in 1l1dA Skipped atom 984, because occupancy 0.390 <= existing 0.580 in 1l1dA Skipped atom 986, because occupancy 0.390 <= existing 0.580 in 1l1dA Skipped atom 988, because occupancy 0.390 <= existing 0.580 in 1l1dA Skipped atom 990, because occupancy 0.390 <= existing 0.580 in 1l1dA Skipped atom 992, because occupancy 0.390 <= existing 0.580 in 1l1dA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1l1dA.541.101 read from T0547.t2k.many.frag # adding 1l1dA to template set # found chain 1l1dA in template set Warning: unaligning (T0547)K543 (1l1dA)A474 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1l1dA)G479 because Y (epsilon') conformation "forbidden" or filtered. T0547 541 :NE 1l1dA 472 :RA T0547 544 :GYEV 1l1dA 475 :DSHL T0547 549 :G 1l1dA 480 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=51248 # 1sacA.541.98 read from T0547.t2k.many.frag # found chain 1sacA in template set Warning: unaligning (T0547)G549 (1sacA)F107 because P (beta_P) conformation "forbidden" or filtered. T0547 541 :NEKGYEVE 1sacA 99 :ESSSGIAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=51249 # 2f8aA.541.179 read from T0547.t2k.many.frag # found chain 2f8aA in training set T0547 541 :NEKGYEVEG 2f8aA 168 :GPDGVPLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=51250 # 1zxuA.541.161 read from T0547.t2k.many.frag # found chain 1zxuA in training set Warning: unaligning (T0547)E548 (1zxuA)A169 because Y (epsilon') conformation "forbidden" or filtered. T0547 541 :NEKGYEV 1zxuA 162 :GESDAIV T0547 549 :G 1zxuA 170 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=51252 # 1dy5A.541.110 read from T0547.t2k.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)E542 (1dy5A)G112 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 541 :N 1dy5A 111 :E T0547 543 :K 1dy5A 113 :N T0547 545 :YEVEG 1dy5A 115 :YVPVH Number of specific fragments extracted= 3 number of extra gaps= 2 total=51255 # 2erfA.541.108 read from T0547.t2k.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)K543 (2erfA)Q117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (2erfA)V123 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NE 2erfA 115 :TV T0547 544 :GYEVE 2erfA 118 :GKQHV Number of specific fragments extracted= 2 number of extra gaps= 2 total=51257 # 1gutA.541.28 read from T0547.t2k.many.frag # found chain 1gutA in training set T0547 541 :NEKGYEVEG 1gutA 29 :IAGGNKITS Number of specific fragments extracted= 1 number of extra gaps= 0 total=51258 # 1mk0A.541.10 read from T0547.t2k.many.frag # found chain 1mk0A in training set T0547 541 :NEKGYEVEG 1mk0A 11 :TLNNKVYVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=51259 # 2f86B.541.118 read from T0547.t2k.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)E542 (2f86B)Q459 because L (left) conformation "forbidden" or filtered. T0547 541 :N 2f86B 458 :K T0547 543 :KGYEVEG 2f86B 460 :GRWVCVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=51261 # 1czpA.541.9 read from T0547.t2k.many.frag # found chain 1czpA in training set Warning: unaligning (T0547)E548 (1czpA)E17 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NEKGYEV 1czpA 10 :EAEGTKH T0547 549 :G 1czpA 18 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=51263 # 1ckmA.541.284 read from T0547.t2k.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)K543 (1ckmA)G287 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1ckmA)T288 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1ckmA)K290 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NE 1ckmA 285 :AD T0547 545 :Y 1ckmA 289 :W T0547 547 :VEG 1ckmA 291 :YIQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=51266 # 1uoyA.541.38 read from T0547.t2k.many.frag # found chain 1uoyA in training set Warning: unaligning (T0547)E546 (1uoyA)T44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1uoyA)Q47 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NEKGY 1uoyA 39 :KGGKW T0547 547 :VE 1uoyA 45 :EV Number of specific fragments extracted= 2 number of extra gaps= 2 total=51268 # 1unqA.541.79 read from T0547.t2k.many.frag # found chain 1unqA in training set Warning: unaligning (T0547)G544 (1unqA)T81 because G (3-10) conformation "forbidden" or filtered. T0547 541 :NEK 1unqA 78 :LQW T0547 545 :YEVEG 1unqA 82 :TVIER Number of specific fragments extracted= 2 number of extra gaps= 1 total=51270 # 1zeqX.541.70 read from T0547.t2k.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)E542 (1zeqX)G76 because L (left) conformation "forbidden" or filtered. T0547 541 :N 1zeqX 75 :Q T0547 543 :KGYEVEG 1zeqX 77 :NLSLLQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=51272 # 2ai4A.541.20 read from T0547.t2k.many.frag # found chain 2ai4A in training set Warning: unaligning (T0547)G544 (2ai4A)E21 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NEK 2ai4A 18 :ENG T0547 545 :YEVEG 2ai4A 22 :PVFIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=51274 1tuwA expands to /projects/compbio/data/pdb/1tuw.pdb.gz 1tuwA:# 1tuwA.541.44 read from T0547.t2k.many.frag # adding 1tuwA to template set # found chain 1tuwA in template set T0547 541 :NEKGYEVEG 1tuwA 45 :FHDLYMHLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=51275 # 1t77A.541.82 read from T0547.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)G544 (1t77A)V2161 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1t77A)N2166 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NEK 1t77A 2158 :ANR T0547 545 :YEVE 1t77A 2162 :AVMF Number of specific fragments extracted= 2 number of extra gaps= 2 total=51277 # 1x31D.542.72 read from T0547.t2k.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)Y545 (1x31D)Y76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1x31D)E77 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1x31D)A80 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :EKG 1x31D 73 :TVS T0547 547 :VE 1x31D 78 :FK T0547 550 :I 1x31D 81 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=51280 # 1m1hA.542.89 read from T0547.t2k.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)K543 (1m1hA)G91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1m1hA)K94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1m1hA)E97 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :E 1m1hA 90 :N T0547 544 :GY 1m1hA 92 :EV T0547 547 :VE 1m1hA 95 :VV T0547 550 :I 1m1hA 98 :S Number of specific fragments extracted= 4 number of extra gaps= 3 total=51284 # 1g1kA.542.43 read from T0547.t2k.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)G549 (1g1kA)S52 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :EKGYEVE 1g1kA 45 :ASLLEVV T0547 550 :I 1g1kA 53 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=51286 # 2nlrA.542.35 read from T0547.t2k.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)Y545 (2nlrA)F39 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :EKG 2nlrA 36 :DTG T0547 546 :EVEGI 2nlrA 40 :RVTQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=51288 # 1mixA.542.147 read from T0547.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)Y545 (1mixA)K345 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1mixA)E346 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1mixA)Q349 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :EKG 1mixA 342 :EKT T0547 547 :VE 1mixA 347 :VI T0547 550 :I 1mixA 350 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=51291 # 1l1dA.542.102 read from T0547.t2k.many.frag # found chain 1l1dA in template set Warning: unaligning (T0547)K543 (1l1dA)A474 because G (3-10) conformation "forbidden" or filtered. T0547 542 :E 1l1dA 473 :A T0547 544 :GYEVEGI 1l1dA 475 :DSHLGHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51293 # 1bcpB.542.114 read from T0547.t2k.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)E542 (1bcpB)T115 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1bcpB)N116 because L (left) conformation "forbidden" or filtered. T0547 544 :GYEVEGI 1bcpB 117 :SRLCAVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=51294 # 1s3sG.542.60 read from T0547.t2k.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)I550 (1s3sG)F312 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :EKGYEVEG 1s3sG 304 :DGGRLVQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=51295 # 1vqoN.542.52 read from T0547.t2k.many.frag # found chain 1vqoN in template set T0547 542 :EKGYEVEGI 1vqoN 52 :PNGDDTLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=51296 # 1zh1A.542.89 read from T0547.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E542 (1zh1A)G125 because S (epsilon) conformation "forbidden" or filtered. T0547 543 :KGYEVEGI 1zh1A 126 :DFHYVTGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=51297 # 2blnA.542.270 read from T0547.t2k.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)K543 (2blnA)G272 because S (epsilon) conformation "forbidden" or filtered. T0547 542 :E 2blnA 271 :D T0547 544 :GYEVEGI 2blnA 273 :ALEIVTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=51299 # 1fiqB.542.224 read from T0547.t2k.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. T0547 542 :E 1fiqB 444 :P T0547 544 :GYEVEGI 1fiqB 446 :SMQVKEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=51301 # 1gutA.542.29 read from T0547.t2k.many.frag # found chain 1gutA in training set Warning: unaligning (T0547)K543 (1gutA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 542 :E 1gutA 30 :A T0547 544 :GYEVEGI 1gutA 32 :GNKITSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=51303 # 1zxuA.542.162 read from T0547.t2k.many.frag # found chain 1zxuA in training set Warning: unaligning (T0547)G549 (1zxuA)Q170 because E (beta_S) conformation "forbidden" or filtered. T0547 542 :EKGYEVE 1zxuA 163 :ESDAIVA T0547 550 :I 1zxuA 171 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=51305 # 1u9iA.542.473 read from T0547.t2k.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)E546 (1u9iA)D478 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1u9iA)D481 because P (beta_P) conformation "forbidden" or filtered. T0547 542 :EKGY 1u9iA 474 :DKGP T0547 547 :VE 1u9iA 479 :IK T0547 550 :I 1u9iA 482 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=51308 # 1uoyA.542.39 read from T0547.t2k.many.frag # found chain 1uoyA in training set Warning: unaligning (T0547)E542 (1uoyA)G40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1uoyA)G41 because T (delta_L) conformation "forbidden" or filtered. T0547 544 :GYEVEGI 1uoyA 42 :KWTEVQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=51309 # 1ckmA.542.285 read from T0547.t2k.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)E542 (1ckmA)D286 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1ckmA)G287 because T (delta_L) conformation "forbidden" or filtered. T0547 544 :GYEVEGI 1ckmA 288 :TWKYIQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=51310 # 1dy5A.542.111 read from T0547.t2k.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1dy5A)V116 because E (beta_S) conformation "forbidden" or filtered. T0547 542 :EK 1dy5A 112 :GN T0547 545 :Y 1dy5A 115 :Y T0547 547 :VEGI 1dy5A 117 :PVHF Number of specific fragments extracted= 3 number of extra gaps= 2 total=51313 # 1q9jA.542.384 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)E542 (1q9jA)A385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1q9jA)G386 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1q9jA)H392 because E (beta_S) conformation "forbidden" or filtered. T0547 544 :GYEVE 1q9jA 387 :QLIIE T0547 550 :I 1q9jA 393 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=51315 # 1wvqA.542.128 read from T0547.t2k.many.frag # found chain 1wvqA in training set T0547 542 :EKGYEVEGI 1wvqA 129 :PERRGVVGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51316 # 1xyiA.542.35 read from T0547.t2k.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)G549 (1xyiA)G43 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :EKGYEVE 1xyiA 36 :DNGKTGR T0547 550 :I 1xyiA 44 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=51318 # 1tuwA.542.45 read from T0547.t2k.many.frag # found chain 1tuwA in template set Warning: unaligning (T0547)E542 (1tuwA)H46 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1tuwA)I53 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :KGYEVE 1tuwA 47 :DLYMHL T0547 550 :I 1tuwA 54 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=51320 # 1nrjA.542.81 read from T0547.t2k.many.frag # found chain 1nrjA in training set Warning: unaligning (T0547)E542 (1nrjA)Q82 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1nrjA)P83 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1nrjA)Y86 because P (beta_P) conformation "forbidden" or filtered. T0547 544 :GY 1nrjA 84 :EL T0547 547 :VEGI 1nrjA 87 :FVVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=51322 # 1czpA.542.10 read from T0547.t2k.many.frag # found chain 1czpA in training set Warning: unaligning (T0547)G549 (1czpA)I18 because E (beta_S) conformation "forbidden" or filtered. T0547 542 :EKGYEVE 1czpA 11 :AEGTKHE T0547 550 :I 1czpA 19 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=51324 # 1p90A.542.36 read from T0547.t2k.many.frag # found chain 1p90A in training set Warning: unaligning (T0547)G544 (1p90A)D137 because E (beta_S) conformation "forbidden" or filtered. T0547 542 :EK 1p90A 135 :AK T0547 545 :YEVEGI 1p90A 138 :ASLVDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=51326 # 1vr9A.542.109 read from T0547.t2k.many.frag # found chain 1vr9A in training set Warning: unaligning (T0547)G544 (1vr9A)E100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1vr9A)G105 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :EK 1vr9A 98 :DE T0547 545 :YEVE 1vr9A 101 :MRLK T0547 550 :I 1vr9A 106 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=51329 # 2f8aA.542.180 read from T0547.t2k.many.frag # found chain 2f8aA in training set T0547 542 :EKGYEVEGI 2f8aA 169 :PDGVPLRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=51330 # 1zeqX.542.71 read from T0547.t2k.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)E542 (1zeqX)G76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1zeqX)N77 because L (left) conformation "forbidden" or filtered. T0547 544 :GYEVEGI 1zeqX 78 :LSLLQDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=51331 # 2f86B.542.119 read from T0547.t2k.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)E542 (2f86B)Q459 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2f86B)R461 because P (beta_P) conformation "forbidden" or filtered. T0547 543 :K 2f86B 460 :G T0547 545 :YEVEGI 2f86B 462 :WVCVHV Number of specific fragments extracted= 2 number of extra gaps= 2 total=51333 # 2erfA.542.109 read from T0547.t2k.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)K543 (2erfA)Q117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (2erfA)Q120 because P (beta_P) conformation "forbidden" or filtered. T0547 542 :E 2erfA 116 :V T0547 544 :GY 2erfA 118 :GK T0547 547 :VEGI 2erfA 121 :HVVS Number of specific fragments extracted= 3 number of extra gaps= 2 total=51336 # 1m1hA.543.90 read from T0547.t2k.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)G544 (1m1hA)E92 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1m1hA)K94 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :K 1m1hA 91 :G T0547 545 :Y 1m1hA 93 :V T0547 547 :VEGII 1m1hA 95 :VVESV Number of specific fragments extracted= 3 number of extra gaps= 2 total=51339 # 1x31D.543.73 read from T0547.t2k.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G549 (1x31D)A80 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :KGYEVE 1x31D 74 :VSYEFK T0547 550 :II 1x31D 81 :VY Number of specific fragments extracted= 2 number of extra gaps= 1 total=51341 # 1g1kA.543.44 read from T0547.t2k.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)G549 (1g1kA)S52 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :KGYEVE 1g1kA 46 :SLLEVV T0547 550 :II 1g1kA 53 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=51343 # 2blnA.543.271 read from T0547.t2k.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)K543 (2blnA)G272 because S (epsilon) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 2blnA 273 :ALEIVTGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=51344 # 2nlrA.543.36 read from T0547.t2k.many.frag # found chain 2nlrA in training set T0547 543 :KGYEVEGII 2nlrA 37 :TGFRVTQAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=51345 # 1zh1A.543.90 read from T0547.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)G544 (1zh1A)F127 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :K 1zh1A 126 :D T0547 545 :YEVEGII 1zh1A 128 :HYVTGMT Number of specific fragments extracted= 2 number of extra gaps= 1 total=51347 # 1ooyA.543.442 read from T0547.t2k.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)G544 (1ooyA)G444 because S (epsilon) conformation "forbidden" or filtered. T0547 543 :K 1ooyA 443 :K T0547 545 :YEVEGII 1ooyA 445 :LTLIELW Number of specific fragments extracted= 2 number of extra gaps= 1 total=51349 # 1bcpB.543.115 read from T0547.t2k.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)K543 (1bcpB)N116 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1bcpB)S117 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVEGII 1bcpB 118 :RLCAVFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=51350 # 1wvqA.543.129 read from T0547.t2k.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)K543 (1wvqA)E130 because L (left) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 1wvqA 131 :RRGVVGVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=51351 # 1vqoN.543.53 read from T0547.t2k.many.frag # found chain 1vqoN in template set T0547 543 :KGYEVEGII 1vqoN 53 :NGDDTLASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51352 # 1s3sG.543.61 read from T0547.t2k.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)G549 (1s3sG)K311 because S (epsilon) conformation "forbidden" or filtered. T0547 543 :KGYEVE 1s3sG 305 :GGRLVQ T0547 550 :II 1s3sG 312 :FN Number of specific fragments extracted= 2 number of extra gaps= 1 total=51354 # 1vs0A.543.290 read from T0547.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)K543 (1vs0A)R740 because P (beta_P) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 1vs0A 741 :QSSWRGLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=51355 # 1l1dA.543.103 read from T0547.t2k.many.frag # found chain 1l1dA in template set Warning: unaligning (T0547)E548 (1l1dA)G479 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :KGYEV 1l1dA 474 :ADSHL T0547 549 :GII 1l1dA 480 :HVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=51357 # 1k92A.543.366 read from T0547.t2k.many.frag # found chain 1k92A in training set T0547 543 :KGYEVEGII 1k92A 367 :NDYSILNTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51358 # 1mixA.543.148 read from T0547.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)E546 (1mixA)E346 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1mixA)Q349 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :KGY 1mixA 343 :KTK T0547 547 :VE 1mixA 347 :VI T0547 550 :II 1mixA 350 :EW Number of specific fragments extracted= 3 number of extra gaps= 2 total=51361 # 1zeqX.543.72 read from T0547.t2k.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)K543 (1zeqX)N77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1zeqX)D83 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GYEVE 1zeqX 78 :LSLLQ T0547 550 :II 1zeqX 84 :IK Number of specific fragments extracted= 2 number of extra gaps= 2 total=51363 # 1fiqB.543.225 read from T0547.t2k.many.frag # found chain 1fiqB in template set T0547 543 :KGYEVEGII 1fiqB 445 :GSMQVKELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51364 # 7ahlA.543.93 read from T0547.t2k.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)G544 (7ahlA)V95 because G (3-10) conformation "forbidden" or filtered. T0547 543 :K 7ahlA 94 :E T0547 545 :YEVEGII 7ahlA 96 :AQISDYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=51366 # 1q9jA.543.385 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)G544 (1q9jA)Q387 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :K 1q9jA 386 :G T0547 545 :YEVEGII 1q9jA 388 :LIIEHHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=51368 # 1u9iA.543.474 read from T0547.t2k.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)E546 (1u9iA)D478 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1u9iA)D481 because P (beta_P) conformation "forbidden" or filtered. T0547 543 :KGY 1u9iA 475 :KGP T0547 547 :VE 1u9iA 479 :IK T0547 550 :II 1u9iA 482 :SF Number of specific fragments extracted= 3 number of extra gaps= 2 total=51371 # 1uoyA.543.40 read from T0547.t2k.many.frag # found chain 1uoyA in training set Warning: unaligning (T0547)G544 (1uoyA)K42 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :K 1uoyA 41 :G T0547 545 :YEVEGII 1uoyA 43 :WTEVQDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=51373 1o65A expands to /projects/compbio/data/pdb/1o65.pdb.gz 1o65A:# 1o65A.543.169 read from T0547.t2k.many.frag # adding 1o65A to template set # found chain 1o65A in template set Warning: unaligning (T0547)G544 (1o65A)P169 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1o65A)E171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1o65A)S174 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :K 1o65A 168 :A T0547 545 :Y 1o65A 170 :L T0547 547 :VE 1o65A 172 :LV T0547 550 :II 1o65A 175 :RV Number of specific fragments extracted= 4 number of extra gaps= 3 total=51377 # 1ckmA.543.286 read from T0547.t2k.many.frag # found chain 1ckmA in template set T0547 543 :KGYEVEGII 1ckmA 287 :GTWKYIQGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=51378 # 1vr9A.543.110 read from T0547.t2k.many.frag # found chain 1vr9A in training set Warning: unaligning (T0547)Y545 (1vr9A)M101 because L (left) conformation "forbidden" or filtered. T0547 543 :KG 1vr9A 99 :EE T0547 546 :EVEGII 1vr9A 102 :RLKGAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51380 # 1ntvA.543.111 read from T0547.t2k.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)K543 (1ntvA)G134 because T (delta_L) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 1ntvA 135 :NHRFVAIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=51381 # 1tuwA.543.46 read from T0547.t2k.many.frag # found chain 1tuwA in template set Warning: unaligning (T0547)E548 (1tuwA)L52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I551 (1tuwA)A55 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :KGYEV 1tuwA 47 :DLYMH T0547 549 :GI 1tuwA 53 :IE Number of specific fragments extracted= 2 number of extra gaps= 2 total=51383 # 1gutA.543.30 read from T0547.t2k.many.frag # found chain 1gutA in training set Warning: unaligning (T0547)K543 (1gutA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 1gutA 32 :GNKITSII Number of specific fragments extracted= 1 number of extra gaps= 1 total=51384 # 1p90A.543.37 read from T0547.t2k.many.frag # found chain 1p90A in training set Warning: unaligning (T0547)G549 (1p90A)D142 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :KGYEVE 1p90A 136 :KDASLV T0547 550 :II 1p90A 143 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=51386 # 1wm3A.543.10 read from T0547.t2k.many.frag # found chain 1wm3A in training set Warning: unaligning (T0547)G544 (1wm3A)S28 because P (beta_P) conformation "forbidden" or filtered. T0547 543 :K 1wm3A 27 :G T0547 545 :YEVEGII 1wm3A 29 :VVQFKIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=51388 # 2f86B.543.120 read from T0547.t2k.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)G549 (2f86B)H466 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :KGYEVE 2f86B 460 :GRWVCV T0547 550 :II 2f86B 467 :VH Number of specific fragments extracted= 2 number of extra gaps= 1 total=51390 # 1m1hA.544.91 read from T0547.t2k.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)E546 (1m1hA)K94 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GY 1m1hA 92 :EV T0547 547 :VEGIIE 1m1hA 95 :VVESVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=51392 # 1ooyA.544.443 read from T0547.t2k.many.frag # found chain 1ooyA in training set T0547 544 :GYEVEGIIE 1ooyA 444 :GLTLIELWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51393 # 1x31D.544.74 read from T0547.t2k.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G549 (1x31D)A80 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GYEVE 1x31D 75 :SYEFK T0547 550 :IIE 1x31D 81 :VYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=51395 # 1g1kA.544.45 read from T0547.t2k.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)G549 (1g1kA)S52 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GYEVE 1g1kA 47 :LLEVV T0547 550 :IIE 1g1kA 53 :VDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=51397 # 1wvqA.544.130 read from T0547.t2k.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)G544 (1wvqA)R131 because D (zeta) conformation "forbidden" or filtered. T0547 545 :YEVEGIIE 1wvqA 132 :RGVVGVVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=51398 # 7ahlA.544.94 read from T0547.t2k.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)G544 (7ahlA)V95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (7ahlA)P103 because C (cis) conformation "forbidden" or filtered. T0547 545 :YEVEGII 7ahlA 96 :AQISDYY Number of specific fragments extracted= 1 number of extra gaps= 2 total=51399 # 2blnA.544.272 read from T0547.t2k.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)G549 (2blnA)T278 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I550 (2blnA)G279 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GYEVE 2blnA 273 :ALEIV T0547 551 :IE 2blnA 280 :QA Number of specific fragments extracted= 2 number of extra gaps= 1 total=51401 # 2nlrA.544.37 read from T0547.t2k.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)G549 (2nlrA)Q43 because E (beta_S) conformation "forbidden" or filtered. T0547 544 :GYEVE 2nlrA 38 :GFRVT T0547 550 :IIE 2nlrA 44 :ADG Number of specific fragments extracted= 2 number of extra gaps= 1 total=51403 # 1vs0A.544.291 read from T0547.t2k.many.frag # found chain 1vs0A in template set T0547 544 :GYEVEGIIE 1vs0A 741 :QSSWRGLRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=51404 # 1zh1A.544.91 read from T0547.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)G544 (1zh1A)F127 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1zh1A)T135 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVEGII 1zh1A 128 :HYVTGMT Number of specific fragments extracted= 1 number of extra gaps= 2 total=51405 # 1o65A.544.170 read from T0547.t2k.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)E546 (1o65A)E171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1o65A)S174 because E (beta_S) conformation "forbidden" or filtered. T0547 544 :GY 1o65A 169 :PL T0547 547 :VE 1o65A 172 :LV T0547 550 :IIE 1o65A 175 :RVS Number of specific fragments extracted= 3 number of extra gaps= 2 total=51408 # 1k92A.544.367 read from T0547.t2k.many.frag # found chain 1k92A in training set Warning: unaligning (T0547)G544 (1k92A)D368 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1k92A)S370 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1k92A)N373 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :Y 1k92A 369 :Y T0547 547 :VE 1k92A 371 :IL T0547 550 :IIE 1k92A 374 :TVS Number of specific fragments extracted= 3 number of extra gaps= 3 total=51411 # 1s3sG.544.62 read from T0547.t2k.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)G549 (1s3sG)K311 because S (epsilon) conformation "forbidden" or filtered. T0547 544 :GYEVE 1s3sG 306 :GRLVQ T0547 550 :IIE 1s3sG 312 :FNH Number of specific fragments extracted= 2 number of extra gaps= 1 total=51413 # 1vqoN.544.54 read from T0547.t2k.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)G549 (1vqoN)A59 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GYEVE 1vqoN 54 :GDDTL T0547 550 :IIE 1vqoN 60 :SAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=51415 # 1gp0A.544.115 read from T0547.t2k.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)E546 (1gp0A)M1625 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1gp0A)S1628 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GY 1gp0A 1623 :RP T0547 547 :VE 1gp0A 1626 :LI T0547 550 :IIE 1gp0A 1629 :LDK Number of specific fragments extracted= 3 number of extra gaps= 2 total=51418 # 1ntvA.544.112 read from T0547.t2k.many.frag # found chain 1ntvA in training set T0547 544 :GYEVEGIIE 1ntvA 135 :NHRFVAIKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51419 # 1zeqX.544.73 read from T0547.t2k.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)G544 (1zeqX)L78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1zeqX)D83 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVE 1zeqX 79 :SLLQ T0547 550 :IIE 1zeqX 84 :IKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=51421 # 1mixA.544.149 read from T0547.t2k.many.frag # found chain 1mixA in training set T0547 544 :GYEVEGIIE 1mixA 344 :TKEVIQEWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=51422 # 1bcpB.544.116 read from T0547.t2k.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)G544 (1bcpB)S117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1bcpB)R125 because D (zeta) conformation "forbidden" or filtered. T0547 545 :YEVEGII 1bcpB 118 :RLCAVFV Number of specific fragments extracted= 1 number of extra gaps= 2 total=51423 # 1ckmA.544.287 read from T0547.t2k.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)G549 (1ckmA)Q293 because E (beta_S) conformation "forbidden" or filtered. T0547 544 :GYEVE 1ckmA 288 :TWKYI T0547 550 :IIE 1ckmA 294 :GRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=51425 # 2bo9B.544.205 read from T0547.t2k.many.frag # found chain 2bo9B in training set Warning: unaligning (T0547)G544 (2bo9B)G206 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (2bo9B)R214 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :YEVEGII 2bo9B 207 :TKVKHNS Number of specific fragments extracted= 1 number of extra gaps= 2 total=51426 # 1kyfA.544.222 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)E548 (1kyfA)T918 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1kyfA)L919 because E (beta_S) conformation "forbidden" or filtered. T0547 544 :GYEV 1kyfA 914 :MYRL T0547 550 :IIE 1kyfA 920 :RTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=51428 # 1q9jA.544.386 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)G544 (1q9jA)Q387 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1q9jA)E391 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1q9jA)H392 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEV 1q9jA 388 :LII T0547 550 :IIE 1q9jA 393 :HGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=51430 # 1uoyA.544.41 read from T0547.t2k.many.frag # found chain 1uoyA in training set Warning: unaligning (T0547)E552 (1uoyA)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 1uoyA 42 :KWTEVQDC Number of specific fragments extracted= 1 number of extra gaps= 1 total=51431 # 1tuwA.544.47 read from T0547.t2k.many.frag # found chain 1tuwA in template set Warning: unaligning (T0547)G544 (1tuwA)L48 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVEGIIE 1tuwA 49 :YMHLIEAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=51432 # 1i12A.544.6 read from T0547.t2k.many.frag # found chain 1i12A in training set Warning: unaligning (T0547)E546 (1i12A)Y8 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1i12A)R10 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GY 1i12A 6 :GF T0547 547 :V 1i12A 9 :I T0547 549 :GIIE 1i12A 11 :RMEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=51435 # 1u9iA.544.475 read from T0547.t2k.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)E546 (1u9iA)D478 because D (zeta) conformation "forbidden" or filtered. T0547 544 :GY 1u9iA 476 :GP T0547 547 :VEGIIE 1u9iA 479 :IKDSFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=51437 # 1zupA.544.127 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)E548 (1zupA)K120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1zupA)V121 because P (beta_P) conformation "forbidden" or filtered. T0547 544 :GYEV 1zupA 116 :GILF T0547 550 :IIE 1zupA 122 :VKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=51439 # 1l1dA.544.104 read from T0547.t2k.many.frag # found chain 1l1dA in template set Warning: unaligning (T0547)E548 (1l1dA)G479 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GYEV 1l1dA 475 :DSHL T0547 549 :GIIE 1l1dA 480 :HVFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=51441 # 1gutA.544.31 read from T0547.t2k.many.frag # found chain 1gutA in training set T0547 544 :GYEVEGIIE 1gutA 32 :GNKITSIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=51442 # 1ooyA.545.444 read from T0547.t2k.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. T0547 545 :YEVEGIIE 1ooyA 445 :LTLIELWE Number of specific fragments extracted= 1 number of extra gaps= 1 total=51443 # 1m1hA.545.92 read from T0547.t2k.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)E546 (1m1hA)K94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1m1hA)E97 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :Y 1m1hA 93 :V T0547 547 :VE 1m1hA 95 :VV T0547 550 :IIEA 1m1hA 98 :SVEG Number of specific fragments extracted= 3 number of extra gaps= 2 total=51446 # 7ahlA.545.95 read from T0547.t2k.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)E552 (7ahlA)P103 because C (cis) conformation "forbidden" or filtered. T0547 545 :YEVEGII 7ahlA 96 :AQISDYY T0547 553 :A 7ahlA 104 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=51448 # 1vs0A.545.292 read from T0547.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)E546 (1vs0A)S743 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :Y 1vs0A 742 :S T0547 547 :VEGIIEA 1vs0A 744 :WRGLRPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=51450 # 1wvqA.545.131 read from T0547.t2k.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)A553 (1wvqA)G140 because S (epsilon) conformation "forbidden" or filtered. T0547 545 :YEVEGIIE 1wvqA 132 :RGVVGVVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=51451 # 1o65A.545.171 read from T0547.t2k.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)E546 (1o65A)E171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1o65A)S177 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :Y 1o65A 170 :L T0547 547 :VEGII 1o65A 172 :LVSRV T0547 553 :A 1o65A 178 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=51454 # 1x31D.545.75 read from T0547.t2k.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)Y545 (1x31D)Y76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1x31D)E77 because P (beta_P) conformation "forbidden" or filtered. T0547 547 :VEGIIEA 1x31D 78 :FKAVYRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=51455 # 1zh1A.545.92 read from T0547.t2k.many.frag # found chain 1zh1A in template set T0547 545 :YEVEGIIEA 1zh1A 128 :HYVTGMTTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=51456 # 1gp0A.545.116 read from T0547.t2k.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)G549 (1gp0A)S1628 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVE 1gp0A 1624 :PMLI T0547 550 :IIEA 1gp0A 1629 :LDKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=51458 # 1g1kA.545.46 read from T0547.t2k.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)E546 (1g1kA)E49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1g1kA)S52 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :Y 1g1kA 48 :L T0547 547 :VE 1g1kA 50 :VV T0547 550 :IIEA 1g1kA 53 :VDAG Number of specific fragments extracted= 3 number of extra gaps= 2 total=51461 # 2blnA.545.273 read from T0547.t2k.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)G549 (2blnA)T278 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (2blnA)G282 because S (epsilon) conformation "forbidden" or filtered. T0547 545 :YEVE 2blnA 274 :LEIV T0547 550 :IIE 2blnA 279 :GQA Number of specific fragments extracted= 2 number of extra gaps= 2 total=51463 # 2nlrA.545.38 read from T0547.t2k.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)E552 (2nlrA)G46 because S (epsilon) conformation "forbidden" or filtered. T0547 545 :YEVEGII 2nlrA 39 :FRVTQAD T0547 553 :A 2nlrA 47 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=51465 # 1s3sG.545.63 read from T0547.t2k.many.frag # found chain 1s3sG in template set T0547 545 :YEVEGIIEA 1s3sG 307 :RLVQKFNHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=51466 # 1k92A.545.368 read from T0547.t2k.many.frag # found chain 1k92A in training set T0547 545 :YEVEGIIEA 1k92A 369 :YSILNTVSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51467 # 1qnaA.545.169 read from T0547.t2k.many.frag # found chain 1qnaA in training set T0547 545 :YEVEGIIEA 1qnaA 170 :IVITGAKMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=51468 # 1ntvA.545.113 read from T0547.t2k.many.frag # found chain 1ntvA in training set T0547 545 :YEVEGIIEA 1ntvA 136 :HRFVAIKTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51469 # 1vqoN.545.55 read from T0547.t2k.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)G549 (1vqoN)A59 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVE 1vqoN 55 :DDTL T0547 550 :IIEA 1vqoN 60 :SAHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=51471 # 1zupA.545.128 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)E548 (1zupA)K120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1zupA)V121 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :YEV 1zupA 117 :ILF T0547 550 :IIEA 1zupA 122 :VKEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=51473 # 1kafA.545.86 read from T0547.t2k.many.frag # found chain 1kafA in training set Warning: unaligning (T0547)G549 (1kafA)I194 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVE 1kafA 190 :VYLD T0547 550 :IIEA 1kafA 195 :KRSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=51475 # 1uoyA.545.42 read from T0547.t2k.many.frag # found chain 1uoyA in training set Warning: unaligning (T0547)E552 (1uoyA)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 545 :YEVEGII 1uoyA 43 :WTEVQDC T0547 553 :A 1uoyA 51 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=51477 # 1tuwA.545.48 read from T0547.t2k.many.frag # found chain 1tuwA in template set Warning: unaligning (T0547)E546 (1tuwA)M50 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :Y 1tuwA 49 :Y T0547 547 :VEGIIEA 1tuwA 51 :HLIEADD Number of specific fragments extracted= 2 number of extra gaps= 1 total=51479 # 1bcpB.545.117 read from T0547.t2k.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)A553 (1bcpB)S126 because L (left) conformation "forbidden" or filtered. T0547 545 :YEVEGIIE 1bcpB 118 :RLCAVFVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=51480 # 1u07A.545.41 read from T0547.t2k.many.frag # found chain 1u07A in training set Warning: unaligning (T0547)E552 (1u07A)P198 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1u07A)A199 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :YEVEGII 1u07A 191 :VQILSAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=51481 # 1wm3A.545.12 read from T0547.t2k.many.frag # found chain 1wm3A in training set Warning: unaligning (T0547)G549 (1wm3A)K33 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVE 1wm3A 29 :VVQF T0547 550 :IIEA 1wm3A 34 :IKRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=51483 # 1kyfA.545.223 read from T0547.t2k.many.frag # found chain 1kyfA in training set T0547 545 :YEVEGIIEA 1kyfA 915 :YRLTLRTSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=51484 # 1t77A.545.86 read from T0547.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)E552 (1t77A)D2169 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVEGII 1t77A 2162 :AVMFNFP T0547 553 :A 1t77A 2170 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=51486 # 1q7eA.545.267 read from T0547.t2k.many.frag # found chain 1q7eA in training set Warning: unaligning (T0547)E546 (1q7eA)Y269 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :Y 1q7eA 268 :A T0547 547 :VEGIIEA 1q7eA 270 :IYFTIQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=51488 # 1i12A.545.7 read from T0547.t2k.many.frag # found chain 1i12A in training set Warning: unaligning (T0547)E546 (1i12A)Y8 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1i12A)R11 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :Y 1i12A 7 :F T0547 547 :VE 1i12A 9 :IR T0547 550 :IIEA 1i12A 12 :MEEG Number of specific fragments extracted= 3 number of extra gaps= 2 total=51491 # 1xmtA.545.36 read from T0547.t2k.many.frag # found chain 1xmtA in training set T0547 545 :YEVEGIIEA 1xmtA 37 :MDLVHTYVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=51492 # 2bo9B.545.206 read from T0547.t2k.many.frag # found chain 2bo9B in training set T0547 545 :YEVEGIIEA 2bo9B 207 :TKVKHNSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51493 # 1ooyA.546.445 read from T0547.t2k.many.frag # found chain 1ooyA in training set T0547 546 :EVEGIIEAQ 1ooyA 446 :TLIELWEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51494 # 7ahlA.546.96 read from T0547.t2k.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)G549 (7ahlA)D100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (7ahlA)P103 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (7ahlA)R104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (7ahlA)N105 because P (beta_P) conformation "forbidden" or filtered. T0547 546 :EVE 7ahlA 97 :QIS T0547 550 :II 7ahlA 101 :YY Number of specific fragments extracted= 2 number of extra gaps= 2 total=51496 # 1vs0A.546.293 read from T0547.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)G549 (1vs0A)G746 because S (epsilon) conformation "forbidden" or filtered. T0547 546 :EVE 1vs0A 743 :SWR T0547 550 :IIEAQ 1vs0A 747 :LRPDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=51498 # 1wvqA.546.132 read from T0547.t2k.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)E552 (1wvqA)D139 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1wvqA)G140 because S (epsilon) conformation "forbidden" or filtered. T0547 546 :EVEGII 1wvqA 133 :GVVGVV T0547 554 :Q 1wvqA 141 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=51500 # 1o65A.546.172 read from T0547.t2k.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)E546 (1o65A)E171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I551 (1o65A)V176 because G (3-10) conformation "forbidden" or filtered. T0547 547 :VEGI 1o65A 172 :LVSR T0547 552 :EAQ 1o65A 177 :SDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=51502 # 1gp0A.546.117 read from T0547.t2k.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)G549 (1gp0A)S1628 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVE 1gp0A 1625 :MLI T0547 550 :IIEAQ 1gp0A 1629 :LDKQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=51504 # 1m1hA.546.93 read from T0547.t2k.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)E546 (1m1hA)K94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1m1hA)G101 because T (delta_L) conformation "forbidden" or filtered. T0547 547 :VEGIIE 1m1hA 95 :VVESVE T0547 554 :Q 1m1hA 102 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=51506 # 1x31D.546.76 read from T0547.t2k.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)E552 (1x31D)R83 because P (beta_P) conformation "forbidden" or filtered. T0547 546 :EVEGII 1x31D 77 :EFKAVY T0547 553 :AQ 1x31D 84 :AG Number of specific fragments extracted= 2 number of extra gaps= 1 total=51508 # 1zupA.546.129 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)A553 (1zupA)G125 because P (beta_P) conformation "forbidden" or filtered. T0547 546 :EVEGIIE 1zupA 118 :LFKVVKE T0547 554 :Q 1zupA 126 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=51510 # 1ntvA.546.114 read from T0547.t2k.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)G549 (1ntvA)A140 because E (beta_S) conformation "forbidden" or filtered. T0547 546 :EVE 1ntvA 137 :RFV T0547 550 :IIEAQ 1ntvA 141 :IKTAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=51512 # 1t77A.546.87 read from T0547.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)E552 (1t77A)D2169 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVEGII 1t77A 2163 :VMFNFP T0547 553 :AQ 1t77A 2170 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=51514 # 1kafA.546.87 read from T0547.t2k.many.frag # found chain 1kafA in training set Warning: unaligning (T0547)G549 (1kafA)I194 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1kafA)S197 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVE 1kafA 191 :YLD T0547 550 :II 1kafA 195 :KR T0547 553 :AQ 1kafA 198 :AE Number of specific fragments extracted= 3 number of extra gaps= 2 total=51517 # 1q7eA.546.268 read from T0547.t2k.many.frag # found chain 1q7eA in training set Warning: unaligning (T0547)E546 (1q7eA)Y269 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1q7eA)F272 because E (beta_S) conformation "forbidden" or filtered. T0547 547 :VE 1q7eA 270 :IY T0547 550 :IIEAQ 1q7eA 273 :TIQEQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=51519 # 1zh1A.546.93 read from T0547.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E552 (1zh1A)T135 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1zh1A)N137 because T (delta_L) conformation "forbidden" or filtered. T0547 546 :EVEGII 1zh1A 129 :YVTGMT T0547 553 :A 1zh1A 136 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=51521 # 1uoyA.546.43 read from T0547.t2k.many.frag # found chain 1uoyA in training set Warning: unaligning (T0547)G549 (1uoyA)Q47 because E (beta_S) conformation "forbidden" or filtered. T0547 546 :EVE 1uoyA 44 :TEV T0547 550 :IIEAQ 1uoyA 48 :DCGSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=51523 # 2blnA.546.274 read from T0547.t2k.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)G549 (2blnA)T278 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (2blnA)G282 because S (epsilon) conformation "forbidden" or filtered. T0547 546 :EVE 2blnA 275 :EIV T0547 550 :IIE 2blnA 279 :GQA T0547 554 :Q 2blnA 283 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=51526 # 1bcpB.546.118 read from T0547.t2k.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)A553 (1bcpB)S126 because L (left) conformation "forbidden" or filtered. T0547 546 :EVEGIIE 1bcpB 119 :LCAVFVR T0547 554 :Q 1bcpB 127 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=51528 # 1s3sG.546.64 read from T0547.t2k.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)Q554 (1s3sG)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVEGIIEA 1s3sG 308 :LVQKFNHS Number of specific fragments extracted= 1 number of extra gaps= 1 total=51529 # 1qnaA.546.170 read from T0547.t2k.many.frag # found chain 1qnaA in training set T0547 546 :EVEGIIEAQ 1qnaA 171 :VITGAKMRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=51530 # 1g1kA.546.47 read from T0547.t2k.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)G549 (1g1kA)S52 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVE 1g1kA 49 :EVV T0547 550 :IIEAQ 1g1kA 53 :VDAGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=51532 # 1nrjA.546.85 read from T0547.t2k.many.frag # found chain 1nrjA in training set T0547 546 :EVEGIIEAQ 1nrjA 86 :YFVVTFAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=51533 # 1m15A.546.228 read from T0547.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)E546 because of BadResidue code BAD_PEPTIDE at template residue (1m15A)R229 T0547 547 :VEGIIEAQ 1m15A 230 :IISMQKGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=51534 # 1kyfA.546.224 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)G549 (1kyfA)L919 because E (beta_S) conformation "forbidden" or filtered. T0547 546 :EVE 1kyfA 916 :RLT T0547 550 :IIEAQ 1kyfA 920 :RTSKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=51536 # 1l1dA.546.106 read from T0547.t2k.many.frag # found chain 1l1dA in template set Warning: unaligning (T0547)E546 (1l1dA)H477 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1l1dA)G479 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :V 1l1dA 478 :L T0547 549 :GIIEAQ 1l1dA 480 :HVFPDG Number of specific fragments extracted= 2 number of extra gaps= 2 total=51538 # 1ok0A.546.31 read from T0547.t2k.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)G549 (1ok0A)V35 because P (beta_P) conformation "forbidden" or filtered. T0547 546 :EVE 1ok0A 32 :TVK T0547 550 :IIEAQ 1ok0A 36 :VYEDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=51540 # 1vqoN.546.56 read from T0547.t2k.many.frag # found chain 1vqoN in template set T0547 546 :EVEGIIEAQ 1vqoN 56 :DTLASAHSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=51541 # 1wm3A.546.13 read from T0547.t2k.many.frag # found chain 1wm3A in training set Warning: unaligning (T0547)G549 (1wm3A)K33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1wm3A)T38 because P (beta_P) conformation "forbidden" or filtered. T0547 546 :EVE 1wm3A 30 :VQF T0547 550 :IIEA 1wm3A 34 :IKRH Number of specific fragments extracted= 2 number of extra gaps= 2 total=51543 # 1q9jA.546.388 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)I551 (1q9jA)G394 because S (epsilon) conformation "forbidden" or filtered. T0547 546 :EVEGI 1q9jA 389 :IIEHH T0547 552 :EAQ 1q9jA 395 :HIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=51545 # 1tuwA.546.49 read from T0547.t2k.many.frag # found chain 1tuwA in template set Warning: unaligning (T0547)G549 (1tuwA)I53 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I551 (1tuwA)A55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1tuwA)D57 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVE 1tuwA 50 :MHL T0547 550 :I 1tuwA 54 :E T0547 552 :E 1tuwA 56 :D T0547 554 :Q 1tuwA 58 :D Number of specific fragments extracted= 4 number of extra gaps= 3 total=51549 # 1u07A.546.42 read from T0547.t2k.many.frag # found chain 1u07A in training set Warning: unaligning (T0547)E552 (1u07A)P198 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1u07A)A199 because P (beta_P) conformation "forbidden" or filtered. T0547 546 :EVEGII 1u07A 192 :QILSAK T0547 554 :Q 1u07A 200 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=51551 # 1ooyA.547.446 read from T0547.t2k.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. T0547 547 :VEGIIE 1ooyA 447 :LIELWE T0547 554 :QS 1ooyA 454 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=51553 # 1zupA.547.130 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)G549 (1zupA)V121 because P (beta_P) conformation "forbidden" or filtered. T0547 547 :VE 1zupA 119 :FK T0547 550 :IIEAQS 1zupA 122 :VKEGKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=51555 # 1vs0A.547.294 read from T0547.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)A553 (1vs0A)D750 because G (3-10) conformation "forbidden" or filtered. T0547 547 :VEGIIE 1vs0A 744 :WRGLRP T0547 554 :QS 1vs0A 751 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=51557 # 1q7eA.547.269 read from T0547.t2k.many.frag # found chain 1q7eA in training set T0547 547 :VEGIIEAQS 1q7eA 270 :IYFTIQEQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=51558 # 7ahlA.547.97 read from T0547.t2k.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)E552 (7ahlA)P103 because C (cis) conformation "forbidden" or filtered. T0547 547 :VEGII 7ahlA 98 :ISDYY T0547 553 :AQS 7ahlA 104 :RNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=51560 # 1ntvA.547.115 read from T0547.t2k.many.frag # found chain 1ntvA in training set T0547 547 :VEGIIEAQS 1ntvA 138 :FVAIKTAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51561 # 1kafA.547.88 read from T0547.t2k.many.frag # found chain 1kafA in training set T0547 547 :VEGIIEAQS 1kafA 192 :LDIKRSAEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=51562 # 1t77A.547.88 read from T0547.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)E548 (1t77A)F2165 because E (beta_S) conformation "forbidden" or filtered. T0547 547 :V 1t77A 2164 :M T0547 549 :GIIEAQS 1t77A 2166 :NFPDPAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=51564 # 1x31D.547.77 read from T0547.t2k.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)A553 (1x31D)A84 because P (beta_P) conformation "forbidden" or filtered. T0547 547 :VEGIIE 1x31D 78 :FKAVYR T0547 554 :QS 1x31D 85 :GE Number of specific fragments extracted= 2 number of extra gaps= 1 total=51566 # 1kyfA.547.225 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)E548 (1kyfA)T918 because E (beta_S) conformation "forbidden" or filtered. T0547 547 :V 1kyfA 917 :L T0547 549 :GIIEAQS 1kyfA 919 :LRTSKDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=51568 # 1m15A.547.229 read from T0547.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)I551 (1m15A)Q234 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1m15A)G236 because S (epsilon) conformation "forbidden" or filtered. T0547 547 :VEGI 1m15A 230 :IISM T0547 552 :E 1m15A 235 :K T0547 554 :QS 1m15A 237 :GD Number of specific fragments extracted= 3 number of extra gaps= 2 total=51571 # 1wvqA.547.133 read from T0547.t2k.many.frag # found chain 1wvqA in training set T0547 547 :VEGIIEAQS 1wvqA 134 :VVGVVDGHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=51572 # 1vqoN.547.57 read from T0547.t2k.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)G549 (1vqoN)A59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1vqoN)D65 because G (3-10) conformation "forbidden" or filtered. T0547 547 :VE 1vqoN 57 :TL T0547 550 :IIEAQ 1vqoN 60 :SAHSS Number of specific fragments extracted= 2 number of extra gaps= 2 total=51574 # 1gp0A.547.118 read from T0547.t2k.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)G549 (1gp0A)S1628 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1gp0A)C1634 because L (left) conformation "forbidden" or filtered. T0547 547 :VE 1gp0A 1626 :LI T0547 550 :IIEAQ 1gp0A 1629 :LDKQT Number of specific fragments extracted= 2 number of extra gaps= 2 total=51576 # 1q9jA.547.389 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)S555 (1q9jA)E398 because L (left) conformation "forbidden" or filtered. T0547 547 :VEGIIEAQ 1q9jA 390 :IEHHGHIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=51577 # 1bcpB.547.119 read from T0547.t2k.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)E552 (1bcpB)R125 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1bcpB)S126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1bcpB)G127 because S (epsilon) conformation "forbidden" or filtered. T0547 547 :VEGII 1bcpB 120 :CAVFV T0547 555 :S 1bcpB 128 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=51579 # 1l1dA.547.107 read from T0547.t2k.many.frag # found chain 1l1dA in template set T0547 547 :VEGIIEAQS 1l1dA 478 :LGHVFPDGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=51580 # 1yc61.547.70 read from T0547.t2k.many.frag # found chain 1yc61 in template set Warning: unaligning (T0547)E548 (1yc61)C107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1yc61)V108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1yc61)K111 because P (beta_P) conformation "forbidden" or filtered. T0547 547 :V 1yc61 106 :A T0547 550 :II 1yc61 109 :AE T0547 553 :AQS 1yc61 112 :QAQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=51583 # 1nrjA.547.86 read from T0547.t2k.many.frag # found chain 1nrjA in training set T0547 547 :VEGIIEAQS 1nrjA 87 :FVVTFAEQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51584 # 1tuwA.547.50 read from T0547.t2k.many.frag # found chain 1tuwA in template set Warning: unaligning (T0547)G549 (1tuwA)I53 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1tuwA)D57 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :VE 1tuwA 51 :HL T0547 550 :IIE 1tuwA 54 :EAD T0547 554 :QS 1tuwA 58 :DI Number of specific fragments extracted= 3 number of extra gaps= 2 total=51587 # 1r6jA.547.26 read from T0547.t2k.many.frag # found chain 1r6jA in training set T0547 547 :VEGIIEAQS 1r6jA 218 :ITSIVKDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=51588 # 1m1hA.547.94 read from T0547.t2k.many.frag # found chain 1m1hA in template set T0547 547 :VEGIIEAQS 1m1hA 95 :VVESVEGDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51589 # 1o65A.547.173 read from T0547.t2k.many.frag # found chain 1o65A in template set T0547 547 :VEGIIEAQS 1o65A 172 :LVSRVSDVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51590 # 1qnaA.547.171 read from T0547.t2k.many.frag # found chain 1qnaA in training set T0547 547 :VEGIIEAQS 1qnaA 172 :ITGAKMRDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51591 # 2blnA.547.275 read from T0547.t2k.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)A553 (2blnA)G282 because S (epsilon) conformation "forbidden" or filtered. T0547 547 :VEGIIE 2blnA 276 :IVTGQA T0547 554 :QS 2blnA 283 :DG Number of specific fragments extracted= 2 number of extra gaps= 1 total=51593 # 1ok0A.547.32 read from T0547.t2k.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)Q554 (1ok0A)D40 because T (delta_L) conformation "forbidden" or filtered. T0547 547 :VEGIIEA 1ok0A 33 :VKVVYED T0547 555 :S 1ok0A 41 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=51595 2ab5A expands to /projects/compbio/data/pdb/2ab5.pdb.gz 2ab5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2ab5A.547.179 read from T0547.t2k.many.frag # adding 2ab5A to template set # found chain 2ab5A in template set Warning: unaligning (T0547)E548 (2ab5A)S429 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (2ab5A)N436 because L (left) conformation "forbidden" or filtered. T0547 547 :V 2ab5A 428 :A T0547 549 :GIIEAQ 2ab5A 430 :FEVSMN Number of specific fragments extracted= 2 number of extra gaps= 2 total=51597 1p9yA expands to /projects/compbio/data/pdb/1p9y.pdb.gz 1p9yA:# 1p9yA.547.17 read from T0547.t2k.many.frag # adding 1p9yA to template set # found chain 1p9yA in template set Warning: unaligning (T0547)E552 (1p9yA)A20 because P (beta_P) conformation "forbidden" or filtered. T0547 547 :VEGII 1p9yA 15 :VTITI T0547 553 :AQS 1p9yA 21 :ADS Number of specific fragments extracted= 2 number of extra gaps= 1 total=51599 1gw5S expands to /projects/compbio/data/pdb/1gw5.pdb.gz 1gw5S:# 1gw5S.547.67 read from T0547.t2k.many.frag # adding 1gw5S to template set # found chain 1gw5S in template set Warning: unaligning (T0547)I550 (1gw5S)V71 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :VEG 1gw5S 68 :CIC T0547 551 :IEAQS 1gw5S 72 :DVNDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=51601 # 1vkkA.547.56 read from T0547.t2k.many.frag # found chain 1vkkA in training set Warning: unaligning (T0547)A553 (1vkkA)N51 because L (left) conformation "forbidden" or filtered. T0547 547 :VEGIIE 1vkkA 45 :LEDELQ T0547 554 :QS 1vkkA 52 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=51603 # 1ooyA.548.447 read from T0547.t2k.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. T0547 548 :EGIIE 1ooyA 448 :IELWE T0547 554 :QSI 1ooyA 454 :LTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51605 # 1zupA.548.131 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)E548 (1zupA)K120 because P (beta_P) conformation "forbidden" or filtered. T0547 549 :GIIEAQSI 1zupA 121 :VVKEGKDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=51606 # 1q7eA.548.270 read from T0547.t2k.many.frag # found chain 1q7eA in training set T0547 548 :EGIIEAQSI 1q7eA 271 :YFTIQEQNW Number of specific fragments extracted= 1 number of extra gaps= 0 total=51607 # 1ntvA.548.116 read from T0547.t2k.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)G549 (1ntvA)A140 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1ntvA)Q145 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :E 1ntvA 139 :V T0547 550 :IIEA 1ntvA 141 :IKTA T0547 555 :SI 1ntvA 146 :AA Number of specific fragments extracted= 3 number of extra gaps= 2 total=51610 # 1kafA.548.89 read from T0547.t2k.many.frag # found chain 1kafA in training set Warning: unaligning (T0547)E552 (1kafA)S197 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :EGII 1kafA 193 :DIKR T0547 553 :AQSI 1kafA 198 :AENI Number of specific fragments extracted= 2 number of extra gaps= 1 total=51612 # 1m15A.548.230 read from T0547.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)G549 (1m15A)S232 because E (beta_S) conformation "forbidden" or filtered. T0547 548 :E 1m15A 231 :I T0547 550 :IIEAQSI 1m15A 233 :MQKGGDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=51614 # 1kyfA.548.226 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)G549 (1kyfA)L919 because E (beta_S) conformation "forbidden" or filtered. T0547 548 :E 1kyfA 918 :T T0547 550 :IIEAQSI 1kyfA 920 :RTSKDTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51616 # 1t77A.548.89 read from T0547.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)E552 (1t77A)D2169 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :EGII 1t77A 2165 :FNFP T0547 553 :AQSI 1t77A 2170 :PATV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51618 # 1vs0A.548.295 read from T0547.t2k.many.frag # found chain 1vs0A in template set T0547 548 :EGIIEAQSI 1vs0A 745 :RGLRPDKKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=51619 # 1tuwA.548.51 read from T0547.t2k.many.frag # found chain 1tuwA in template set Warning: unaligning (T0547)I551 (1tuwA)A55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1tuwA)D57 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :EGI 1tuwA 52 :LIE T0547 552 :E 1tuwA 56 :D T0547 554 :QSI 1tuwA 58 :DIM Number of specific fragments extracted= 3 number of extra gaps= 2 total=51622 # 1p9yA.548.18 read from T0547.t2k.many.frag # found chain 1p9yA in template set Warning: unaligning (T0547)G549 (1p9yA)I17 because E (beta_S) conformation "forbidden" or filtered. T0547 548 :E 1p9yA 16 :T T0547 550 :IIEAQSI 1p9yA 18 :TIAADSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=51624 # 1r6jA.548.27 read from T0547.t2k.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)G549 (1r6jA)S220 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1r6jA)D224 because T (delta_L) conformation "forbidden" or filtered. T0547 548 :E 1r6jA 219 :T T0547 550 :IIE 1r6jA 221 :IVK T0547 554 :QSI 1r6jA 225 :SSA Number of specific fragments extracted= 3 number of extra gaps= 2 total=51627 # 2ab5A.548.180 read from T0547.t2k.many.frag # found chain 2ab5A in template set Warning: unaligning (T0547)S555 (2ab5A)N436 because L (left) conformation "forbidden" or filtered. T0547 548 :EGIIEAQ 2ab5A 429 :SFEVSMN T0547 556 :I 2ab5A 437 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=51629 # 1vqoN.548.58 read from T0547.t2k.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)I550 (1vqoN)S60 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :EG 1vqoN 58 :LA T0547 551 :IEAQSI 1vqoN 61 :AHSSDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=51631 # 1yc61.548.71 read from T0547.t2k.many.frag # found chain 1yc61 in template set Warning: unaligning (T0547)E548 (1yc61)C107 because Y (epsilon') conformation "forbidden" or filtered. T0547 549 :GIIEAQSI 1yc61 108 :VAEKQAQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=51632 # 1gutA.548.35 read from T0547.t2k.many.frag # found chain 1gutA in training set T0547 548 :EGIIEAQSI 1gutA 36 :TSIISLDSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51633 # 1vr9A.548.115 read from T0547.t2k.many.frag # found chain 1vr9A in training set T0547 548 :EGIIEAQSI 1vr9A 104 :KGAVSLHDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=51634 # 1qnaA.548.172 read from T0547.t2k.many.frag # found chain 1qnaA in training set T0547 548 :EGIIEAQSI 1qnaA 173 :TGAKMRDET Number of specific fragments extracted= 1 number of extra gaps= 0 total=51635 # 1vkkA.548.57 read from T0547.t2k.many.frag # found chain 1vkkA in training set Warning: unaligning (T0547)A553 (1vkkA)N51 because L (left) conformation "forbidden" or filtered. T0547 548 :EGIIE 1vkkA 46 :EDELQ T0547 554 :QSI 1vkkA 52 :ISP Number of specific fragments extracted= 2 number of extra gaps= 1 total=51637 # 1xkrA.548.186 read from T0547.t2k.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)G549 (1xkrA)M187 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1xkrA)G192 because T (delta_L) conformation "forbidden" or filtered. T0547 548 :E 1xkrA 186 :M T0547 550 :IIEA 1xkrA 188 :IPKP T0547 555 :SI 1xkrA 193 :YL Number of specific fragments extracted= 3 number of extra gaps= 2 total=51640 # 1szwA.548.342 read from T0547.t2k.many.frag # found chain 1szwA in template set T0547 548 :EGIIEAQSI 1szwA 321 :RFWLPAGSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=51641 # 1g8mA.548.443 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)E552 (1g8mA)G448 because L (left) conformation "forbidden" or filtered. T0547 548 :EGII 1g8mA 444 :GIGA T0547 553 :AQSI 1g8mA 449 :QQSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=51643 # 2fa1A.548.65 read from T0547.t2k.many.frag # found chain 2fa1A in training set Warning: unaligning (T0547)E548 (2fa1A)D147 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I556 (2fa1A)L155 because G (3-10) conformation "forbidden" or filtered. T0547 549 :GIIEAQS 2fa1A 148 :HYFADLT Number of specific fragments extracted= 1 number of extra gaps= 2 total=51644 # 1nrjA.548.87 read from T0547.t2k.many.frag # found chain 1nrjA in training set T0547 548 :EGIIEAQSI 1nrjA 88 :VVTFAEQTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51645 # 1q9jA.548.390 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)S555 (1q9jA)E398 because L (left) conformation "forbidden" or filtered. T0547 548 :EGIIEAQ 1q9jA 391 :EHHGHIA T0547 556 :I 1q9jA 399 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=51647 # 2a6aA.548.146 read from T0547.t2k.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)G549 (2a6aA)S136 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (2a6aA)S139 because P (beta_P) conformation "forbidden" or filtered. T0547 548 :E 2a6aA 135 :P T0547 550 :II 2a6aA 137 :VV T0547 553 :AQSI 2a6aA 140 :DEEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=51650 # 7ahlA.548.98 read from T0547.t2k.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)I550 (7ahlA)Y101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (7ahlA)P103 because C (cis) conformation "forbidden" or filtered. T0547 548 :EG 7ahlA 99 :SD T0547 551 :I 7ahlA 102 :Y T0547 553 :AQSI 7ahlA 104 :RNSI Number of specific fragments extracted= 3 number of extra gaps= 2 total=51653 # 2bt6A.548.20 read from T0547.t2k.many.frag # found chain 2bt6A in training set T0547 548 :EGIIEAQSI 2bt6A 21 :TKGKIGDSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51654 1k3sA expands to /projects/compbio/data/pdb/1k3s.pdb.gz 1k3sA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1k3sA.548.82 read from T0547.t2k.many.frag # adding 1k3sA to template set # found chain 1k3sA in template set Warning: unaligning (T0547)G549 (1k3sA)R84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1k3sA)T90 because P (beta_P) conformation "forbidden" or filtered. T0547 548 :E 1k3sA 83 :Y T0547 550 :IIEAQ 1k3sA 85 :LPQTS T0547 556 :I 1k3sA 91 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=51657 # 1gtkA.548.274 read from T0547.t2k.many.frag # found chain 1gtkA in training set T0547 548 :EGIIEAQSI 1gtkA 275 :ERRGAPQDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51658 # 1zupA.549.132 read from T0547.t2k.many.frag # found chain 1zupA in template set T0547 549 :GIIEAQSIL 1zupA 121 :VVKEGKDAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=51659 # 1ooyA.549.448 read from T0547.t2k.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. T0547 549 :GIIE 1ooyA 449 :ELWE T0547 554 :QSIL 1ooyA 454 :LTVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=51661 # 1q7eA.549.271 read from T0547.t2k.many.frag # found chain 1q7eA in training set Warning: unaligning (T0547)G549 (1q7eA)F272 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1q7eA)Q275 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 1q7eA 273 :TI T0547 553 :AQSIL 1q7eA 276 :EQNWE Number of specific fragments extracted= 2 number of extra gaps= 2 total=51663 # 1ntvA.549.117 read from T0547.t2k.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)G549 (1ntvA)A140 because E (beta_S) conformation "forbidden" or filtered. T0547 550 :IIEAQSIL 1ntvA 141 :IKTAQAAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=51664 # 1kafA.549.90 read from T0547.t2k.many.frag # found chain 1kafA in training set Warning: unaligning (T0547)E552 (1kafA)S197 because Y (epsilon') conformation "forbidden" or filtered. T0547 549 :GII 1kafA 194 :IKR T0547 553 :AQSIL 1kafA 198 :AENIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=51666 # 1t77A.549.90 read from T0547.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)G549 (1t77A)N2166 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1t77A)D2169 because Y (epsilon') conformation "forbidden" or filtered. T0547 550 :II 1t77A 2167 :FP T0547 553 :AQSIL 1t77A 2170 :PATVK Number of specific fragments extracted= 2 number of extra gaps= 2 total=51668 # 1g8mA.549.444 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)E552 (1g8mA)G448 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1g8mA)Q450 because G (3-10) conformation "forbidden" or filtered. T0547 549 :GII 1g8mA 445 :IGA T0547 553 :A 1g8mA 449 :Q T0547 555 :SIL 1g8mA 451 :SRI Number of specific fragments extracted= 3 number of extra gaps= 2 total=51671 # 1m15A.549.231 read from T0547.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)G549 (1m15A)S232 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1m15A)G236 because S (epsilon) conformation "forbidden" or filtered. T0547 550 :IIE 1m15A 233 :MQK T0547 554 :QSIL 1m15A 237 :GDLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=51673 # 1kyfA.549.227 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)G549 (1kyfA)L919 because E (beta_S) conformation "forbidden" or filtered. T0547 550 :IIEAQSIL 1kyfA 920 :RTSKDTVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=51674 # 1p9yA.549.19 read from T0547.t2k.many.frag # found chain 1p9yA in template set T0547 549 :GIIEAQSIL 1p9yA 17 :ITIAADSIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51675 # 1tuwA.549.52 read from T0547.t2k.many.frag # found chain 1tuwA in template set Warning: unaligning (T0547)I551 (1tuwA)A55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1tuwA)D57 because Y (epsilon') conformation "forbidden" or filtered. T0547 549 :GI 1tuwA 53 :IE T0547 552 :E 1tuwA 56 :D T0547 554 :QSIL 1tuwA 58 :DIME Number of specific fragments extracted= 3 number of extra gaps= 2 total=51678 # 1yc61.549.72 read from T0547.t2k.many.frag # found chain 1yc61 in template set Warning: unaligning (T0547)G549 (1yc61)V108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1yc61)K111 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 1yc61 109 :AE T0547 553 :AQSIL 1yc61 112 :QAQAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=51680 # 2a6aA.549.147 read from T0547.t2k.many.frag # found chain 2a6aA in template set T0547 549 :GIIEAQSIL 2a6aA 136 :SVVSDEELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51681 # 2ab5A.549.181 read from T0547.t2k.many.frag # found chain 2ab5A in template set Warning: unaligning (T0547)S555 (2ab5A)N436 because L (left) conformation "forbidden" or filtered. T0547 549 :GIIEAQ 2ab5A 430 :FEVSMN T0547 556 :IL 2ab5A 437 :NM Number of specific fragments extracted= 2 number of extra gaps= 1 total=51683 # 1vkkA.549.58 read from T0547.t2k.many.frag # found chain 1vkkA in training set Warning: unaligning (T0547)A553 (1vkkA)N51 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1vkkA)I52 because E (beta_S) conformation "forbidden" or filtered. T0547 549 :GIIE 1vkkA 47 :DELQ T0547 555 :SIL 1vkkA 53 :SPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=51685 # 2fa1A.549.66 read from T0547.t2k.many.frag # found chain 2fa1A in training set T0547 549 :GIIEAQSIL 2fa1A 148 :HYFADLTLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=51686 # 1gutA.549.36 read from T0547.t2k.many.frag # found chain 1gutA in training set T0547 549 :GIIEAQSIL 1gutA 37 :SIISLDSVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51687 # 1vqoN.549.59 read from T0547.t2k.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)I550 (1vqoN)S60 because Y (epsilon') conformation "forbidden" or filtered. T0547 549 :G 1vqoN 59 :A T0547 551 :IEAQSIL 1vqoN 61 :AHSSDLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=51689 # 1r6jA.549.28 read from T0547.t2k.many.frag # found chain 1r6jA in training set T0547 549 :GIIEAQSIL 1r6jA 220 :SIVKDSSAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51690 # 1gtkA.549.275 read from T0547.t2k.many.frag # found chain 1gtkA in training set T0547 549 :GIIEAQSIL 1gtkA 276 :RRGAPQDAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51691 # 2bt6A.549.21 read from T0547.t2k.many.frag # found chain 2bt6A in training set Warning: unaligning (T0547)E552 (2bt6A)I25 because P (beta_P) conformation "forbidden" or filtered. T0547 549 :GII 2bt6A 22 :KGK T0547 553 :AQSIL 2bt6A 26 :GDSLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=51693 # 1o65A.549.175 read from T0547.t2k.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)I551 (1o65A)V176 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1o65A)S177 because Y (epsilon') conformation "forbidden" or filtered. T0547 549 :GI 1o65A 174 :SR T0547 553 :AQSIL 1o65A 178 :DVTVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=51695 # 1k3sA.549.83 read from T0547.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0547)G549 (1k3sA)R84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1k3sA)T90 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :IIEAQ 1k3sA 85 :LPQTS T0547 556 :IL 1k3sA 91 :EE Number of specific fragments extracted= 2 number of extra gaps= 2 total=51697 # 1vr9A.549.116 read from T0547.t2k.many.frag # found chain 1vr9A in training set T0547 549 :GIIEAQSIL 1vr9A 105 :GAVSLHDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51698 # 2ab5A.549.216 read from T0547.t2k.many.frag # found chain 2ab5A in template set T0547 549 :GIIEAQSIL 2ab5A 465 :TTKSINDIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=51699 # 1xkrA.549.187 read from T0547.t2k.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)G549 (1xkrA)M187 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1xkrA)G192 because T (delta_L) conformation "forbidden" or filtered. T0547 550 :IIEA 1xkrA 188 :IPKP T0547 555 :SIL 1xkrA 193 :YLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=51701 # 1qnaA.549.173 read from T0547.t2k.many.frag # found chain 1qnaA in training set Warning: unaligning (T0547)E552 (1qnaA)M177 because E (beta_S) conformation "forbidden" or filtered. T0547 549 :GII 1qnaA 174 :GAK T0547 553 :AQSIL 1qnaA 178 :RDETY Number of specific fragments extracted= 2 number of extra gaps= 1 total=51703 # 1vs0A.549.296 read from T0547.t2k.many.frag # found chain 1vs0A in template set T0547 549 :GIIEAQSIL 1vs0A 746 :GLRPDKKPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=51704 # 1q9jA.549.391 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)A553 (1q9jA)I396 because E (beta_S) conformation "forbidden" or filtered. T0547 549 :GIIE 1q9jA 392 :HHGH T0547 554 :QSIL 1q9jA 397 :AEPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=51706 # 1nrjA.549.88 read from T0547.t2k.many.frag # found chain 1nrjA in training set Warning: unaligning (T0547)A553 (1nrjA)E93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1nrjA)T95 because Y (epsilon') conformation "forbidden" or filtered. T0547 549 :GIIE 1nrjA 89 :VTFA T0547 554 :Q 1nrjA 94 :Q T0547 556 :IL 1nrjA 96 :LE Number of specific fragments extracted= 3 number of extra gaps= 2 total=51709 # 1zupA.550.133 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)I551 (1zupA)K123 because G (3-10) conformation "forbidden" or filtered. T0547 550 :I 1zupA 122 :V T0547 552 :EAQSILD 1zupA 124 :EGKDAMQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=51711 # 1ooyA.550.449 read from T0547.t2k.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. T0547 550 :IIE 1ooyA 450 :LWE T0547 554 :QSILD 1ooyA 454 :LTVDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=51713 # 1q7eA.550.272 read from T0547.t2k.many.frag # found chain 1q7eA in training set Warning: unaligning (T0547)E552 (1q7eA)Q275 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 1q7eA 273 :TI T0547 553 :AQSILD 1q7eA 276 :EQNWEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=51715 # 1t77A.550.91 read from T0547.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)E552 (1t77A)D2169 because Y (epsilon') conformation "forbidden" or filtered. T0547 550 :II 1t77A 2167 :FP T0547 553 :AQSILD 1t77A 2170 :PATVKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=51717 # 1ntvA.550.118 read from T0547.t2k.many.frag # found chain 1ntvA in training set T0547 550 :IIEAQSILD 1ntvA 141 :IKTAQAAEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=51718 # 1tuwA.550.53 read from T0547.t2k.many.frag # found chain 1tuwA in template set Warning: unaligning (T0547)I551 (1tuwA)A55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1tuwA)D57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1tuwA)I59 because G (3-10) conformation "forbidden" or filtered. T0547 550 :I 1tuwA 54 :E T0547 552 :E 1tuwA 56 :D T0547 554 :Q 1tuwA 58 :D T0547 556 :ILD 1tuwA 60 :MER Number of specific fragments extracted= 4 number of extra gaps= 3 total=51722 # 1g8mA.550.445 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)E552 (1g8mA)G448 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1g8mA)Q450 because G (3-10) conformation "forbidden" or filtered. T0547 550 :II 1g8mA 446 :GA T0547 553 :A 1g8mA 449 :Q T0547 555 :SILD 1g8mA 451 :SRIH Number of specific fragments extracted= 3 number of extra gaps= 2 total=51725 # 1kafA.550.91 read from T0547.t2k.many.frag # found chain 1kafA in training set T0547 550 :IIEAQSILD 1kafA 195 :KRSAENIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51726 # 1yc61.550.73 read from T0547.t2k.many.frag # found chain 1yc61 in template set T0547 550 :IIEAQSILD 1yc61 109 :AEKQAQAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51727 # 1o65A.550.176 read from T0547.t2k.many.frag # found chain 1o65A in template set T0547 550 :IIEAQSILD 1o65A 175 :RVSDVTVQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51728 # 2a6aA.550.148 read from T0547.t2k.many.frag # found chain 2a6aA in template set T0547 550 :IIEAQSILD 2a6aA 137 :VVSDEELEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51729 # 1xkrA.550.188 read from T0547.t2k.many.frag # found chain 1xkrA in training set T0547 550 :IIEAQSILD 1xkrA 188 :IPKPGYLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=51730 # 1m15A.550.232 read from T0547.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)E552 (1m15A)K235 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 1m15A 233 :MQ T0547 553 :AQSILD 1m15A 236 :GGDLKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=51732 1y7mA expands to /projects/compbio/data/pdb/1y7m.pdb.gz 1y7mA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1y7mA.550.5 read from T0547.t2k.many.frag # adding 1y7mA to template set # found chain 1y7mA in template set Warning: unaligning (T0547)A553 (1y7mA)G9 because T (delta_L) conformation "forbidden" or filtered. T0547 550 :IIE 1y7mA 6 :VKQ T0547 554 :QSILD 1y7mA 10 :DTLNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=51734 # 1kyfA.550.228 read from T0547.t2k.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)A553 (1kyfA)K923 because E (beta_S) conformation "forbidden" or filtered. T0547 550 :IIE 1kyfA 920 :RTS T0547 554 :QSILD 1kyfA 924 :DTVSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=51736 # 2bt6A.550.22 read from T0547.t2k.many.frag # found chain 2bt6A in training set Warning: unaligning (T0547)A553 (2bt6A)G26 because T (delta_L) conformation "forbidden" or filtered. T0547 550 :IIE 2bt6A 23 :GKI T0547 554 :QSILD 2bt6A 27 :DSLLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=51738 # 2ab5A.550.182 read from T0547.t2k.many.frag # found chain 2ab5A in template set Warning: unaligning (T0547)S555 (2ab5A)N436 because L (left) conformation "forbidden" or filtered. T0547 550 :IIEAQ 2ab5A 431 :EVSMN T0547 556 :ILD 2ab5A 437 :NME Number of specific fragments extracted= 2 number of extra gaps= 1 total=51740 # 2ab5A.550.217 read from T0547.t2k.many.frag # found chain 2ab5A in template set T0547 550 :IIEAQSILD 2ab5A 466 :TKSINDIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=51741 # 2fa1A.550.67 read from T0547.t2k.many.frag # found chain 2fa1A in training set T0547 550 :IIEAQSILD 2fa1A 149 :YFADLTLWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=51742 # 1c1yB.550.17 read from T0547.t2k.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)A553 (1c1yB)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 550 :IIE 1c1yB 72 :VRN T0547 554 :QSILD 1c1yB 76 :MSLHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=51744 # 1gtkA.550.276 read from T0547.t2k.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)E552 (1gtkA)A279 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 1gtkA 277 :RG T0547 553 :AQSILD 1gtkA 280 :PQDAEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=51746 # 1s3sG.550.68 read from T0547.t2k.many.frag # found chain 1s3sG in template set T0547 550 :IIEAQSILD 1s3sG 312 :FNHSHRISD Number of specific fragments extracted= 1 number of extra gaps= 0 total=51747 # 1k3sA.550.84 read from T0547.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0547)S555 (1k3sA)T90 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :IIEAQ 1k3sA 85 :LPQTS T0547 556 :ILD 1k3sA 91 :EEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=51749 # 8abp.550.287 read from T0547.t2k.many.frag # found chain 8abp in training set Warning: unaligning (T0547)E552 (8abp)T290 because Y (epsilon') conformation "forbidden" or filtered. T0547 550 :II 8abp 288 :LI T0547 553 :AQSILD 8abp 291 :RDNFKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=51751 # 1k4iA.550.192 read from T0547.t2k.many.frag # found chain 1k4iA in training set Warning: unaligning (T0547)E552 (1k4iA)R195 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1k4iA)G196 because S (epsilon) conformation "forbidden" or filtered. T0547 550 :II 1k4iA 193 :ML T0547 554 :QSILD 1k4iA 197 :DECVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=51753 # 1vr9A.550.117 read from T0547.t2k.many.frag # found chain 1vr9A in training set T0547 550 :IIEAQSILD 1vr9A 106 :AVSLHDFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51754 # 1qnaA.550.174 read from T0547.t2k.many.frag # found chain 1qnaA in training set T0547 550 :IIEAQSILD 1qnaA 175 :AKMRDETYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=51755 # 1vkkA.550.59 read from T0547.t2k.many.frag # found chain 1vkkA in training set Warning: unaligning (T0547)E552 (1vkkA)Q50 because E (beta_S) conformation "forbidden" or filtered. T0547 550 :II 1vkkA 48 :EL T0547 553 :AQSILD 1vkkA 51 :NISPEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=51757 # 1r6jA.550.29 read from T0547.t2k.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)A553 (1r6jA)D224 because T (delta_L) conformation "forbidden" or filtered. T0547 550 :IIE 1r6jA 221 :IVK T0547 554 :QSILD 1r6jA 225 :SSAAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=51759 # 1l3lA.550.184 read from T0547.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)A553 (1l3lA)G188 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1l3lA)T190 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :IIE 1l3lA 185 :IAV T0547 554 :Q 1l3lA 189 :K T0547 556 :ILD 1l3lA 191 :MEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=51762 # 1zupA.551.134 read from T0547.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)I551 (1zupA)K123 because G (3-10) conformation "forbidden" or filtered. T0547 552 :EAQSILDT 1zupA 124 :EGKDAMQS Number of specific fragments extracted= 1 number of extra gaps= 1 total=51763 # 1q7eA.551.273 read from T0547.t2k.many.frag # found chain 1q7eA in training set T0547 551 :IEAQSILDT 1q7eA 274 :IQEQNWENT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51764 # 1ooyA.551.450 read from T0547.t2k.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)E552 (1ooyA)E452 because P (beta_P) conformation "forbidden" or filtered. T0547 551 :I 1ooyA 451 :W T0547 553 :AQSILDT 1ooyA 453 :GLTVDDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=51766 # 1ntvA.551.119 read from T0547.t2k.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)E552 (1ntvA)T143 because P (beta_P) conformation "forbidden" or filtered. T0547 551 :I 1ntvA 142 :K T0547 553 :AQSILDT 1ntvA 144 :AQAAEPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51768 # 1t77A.551.92 read from T0547.t2k.many.frag # found chain 1t77A in template set T0547 551 :IEAQSILDT 1t77A 2168 :PDPATVKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51769 # 1o65A.551.177 read from T0547.t2k.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)E552 (1o65A)S177 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1o65A)T180 because P (beta_P) conformation "forbidden" or filtered. T0547 551 :I 1o65A 176 :V T0547 553 :AQ 1o65A 178 :DV T0547 556 :ILDT 1o65A 181 :VQEA Number of specific fragments extracted= 3 number of extra gaps= 2 total=51772 # 1tuwA.551.54 read from T0547.t2k.many.frag # found chain 1tuwA in template set T0547 551 :IEAQSILDT 1tuwA 55 :ADDDIMERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51773 # 1g8mA.551.446 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)E552 (1g8mA)G448 because L (left) conformation "forbidden" or filtered. T0547 551 :I 1g8mA 447 :A T0547 553 :AQSILDT 1g8mA 449 :QQSRIHC Number of specific fragments extracted= 2 number of extra gaps= 1 total=51775 # 1yc61.551.74 read from T0547.t2k.many.frag # found chain 1yc61 in template set T0547 551 :IEAQSILDT 1yc61 110 :EKQAQAEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51776 # 1l3lA.551.185 read from T0547.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)A553 (1l3lA)G188 because T (delta_L) conformation "forbidden" or filtered. T0547 551 :IE 1l3lA 186 :AV T0547 554 :QSILDT 1l3lA 189 :KTMEEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=51778 # 1kafA.551.92 read from T0547.t2k.many.frag # found chain 1kafA in training set T0547 551 :IEAQSILDT 1kafA 196 :RSAENIEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51779 # 1xkrA.551.189 read from T0547.t2k.many.frag # found chain 1xkrA in training set T0547 551 :IEAQSILDT 1xkrA 189 :PKPGYLVKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=51780 # 1k4iA.551.193 read from T0547.t2k.many.frag # found chain 1k4iA in training set T0547 551 :IEAQSILDT 1k4iA 194 :LRGDECVAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=51781 # 1y7mA.551.6 read from T0547.t2k.many.frag # found chain 1y7mA in template set T0547 551 :IEAQSILDT 1y7mA 7 :KQGDTLNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=51782 # 2a6aA.551.149 read from T0547.t2k.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)E552 (2a6aA)S139 because P (beta_P) conformation "forbidden" or filtered. T0547 551 :I 2a6aA 138 :V T0547 553 :AQSILDT 2a6aA 140 :DEELEEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=51784 # 2bt6A.551.23 read from T0547.t2k.many.frag # found chain 2bt6A in training set Warning: unaligning (T0547)E552 (2bt6A)I25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (2bt6A)G26 because T (delta_L) conformation "forbidden" or filtered. T0547 551 :I 2bt6A 24 :K T0547 554 :QSILDT 2bt6A 27 :DSLLDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51786 # 2ab5A.551.183 read from T0547.t2k.many.frag # found chain 2ab5A in template set Warning: unaligning (T0547)E552 (2ab5A)S433 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (2ab5A)N436 because L (left) conformation "forbidden" or filtered. T0547 551 :I 2ab5A 432 :V T0547 553 :AQ 2ab5A 434 :MN T0547 556 :ILDT 2ab5A 437 :NMEV Number of specific fragments extracted= 3 number of extra gaps= 2 total=51789 # 1m15A.551.233 read from T0547.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)A553 (1m15A)G236 because S (epsilon) conformation "forbidden" or filtered. T0547 551 :IE 1m15A 234 :QK T0547 554 :QSILDT 1m15A 237 :GDLKTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=51791 # 2fa1A.551.68 read from T0547.t2k.many.frag # found chain 2fa1A in training set T0547 551 :IEAQSILDT 2fa1A 150 :FADLTLWPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51792 # 2ab5A.551.218 read from T0547.t2k.many.frag # found chain 2ab5A in template set T0547 551 :IEAQSILDT 2ab5A 467 :KSINDIKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51793 # 1epuA.551.415 read from T0547.t2k.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)E552 (1epuA)S417 because P (beta_P) conformation "forbidden" or filtered. T0547 551 :I 1epuA 416 :I T0547 553 :AQSILDT 1epuA 418 :EENLAKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=51795 2c43A expands to /projects/compbio/data/pdb/2c43.pdb.gz 2c43A:Skipped atom 559, because occupancy 0.300 <= existing 0.700 in 2c43A Skipped atom 560, because occupancy 0.300 <= existing 0.700 in 2c43A Skipped atom 561, because occupancy 0.300 <= existing 0.700 in 2c43A Skipped atom 562, because occupancy 0.300 <= existing 0.700 in 2c43A Skipped atom 563, because occupancy 0.300 <= existing 0.700 in 2c43A # 2c43A.551.145 read from T0547.t2k.many.frag # adding 2c43A to template set # found chain 2c43A in template set T0547 551 :IEAQSILDT 2c43A 146 :PGRGSIPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=51796 # 1s3sG.551.69 read from T0547.t2k.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)Q554 (1s3sG)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 551 :IEA 1s3sG 313 :NHS T0547 555 :SILDT 1s3sG 317 :RISDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=51798 # 1c1yB.551.18 read from T0547.t2k.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)A553 (1c1yB)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 551 :IE 1c1yB 73 :RN T0547 554 :QSILDT 1c1yB 76 :MSLHDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=51800 1rr7A expands to /projects/compbio/data/pdb/1rr7.pdb.gz 1rr7A:# 1rr7A.551.89 read from T0547.t2k.many.frag # adding 1rr7A to template set # found chain 1rr7A in template set Warning: unaligning (T0547)A553 (1rr7A)G92 because T (delta_L) conformation "forbidden" or filtered. T0547 551 :IE 1rr7A 90 :FN T0547 554 :QSILDT 1rr7A 93 :RNVSEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=51802 1uz5A expands to /projects/compbio/data/pdb/1uz5.pdb.gz 1uz5A:Skipped atom 2331, because occupancy 0.500 <= existing 0.500 in 1uz5A Skipped atom 2332, because occupancy 0.500 <= existing 0.500 in 1uz5A Skipped atom 2333, because occupancy 0.500 <= existing 0.500 in 1uz5A Skipped atom 2334, because occupancy 0.500 <= existing 0.500 in 1uz5A # 1uz5A.551.362 read from T0547.t2k.many.frag # adding 1uz5A to template set # found chain 1uz5A in template set Warning: unaligning (T0547)S555 (1uz5A)G367 because S (epsilon) conformation "forbidden" or filtered. T0547 551 :IEAQ 1uz5A 363 :LKGS T0547 556 :ILDT 1uz5A 368 :AVTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=51804 # 1k3sA.551.85 read from T0547.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0547)A553 (1k3sA)T88 because G (3-10) conformation "forbidden" or filtered. T0547 551 :IE 1k3sA 86 :PQ T0547 554 :QSILDT 1k3sA 89 :STEEEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=51806 # 1yb3A.551.124 read from T0547.t2k.many.frag # found chain 1yb3A in training set T0547 551 :IEAQSILDT 1yb3A 117 :EHPISGDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51807 # 8abp.551.288 read from T0547.t2k.many.frag # found chain 8abp in training set Warning: unaligning (T0547)E552 (8abp)T290 because Y (epsilon') conformation "forbidden" or filtered. T0547 551 :I 8abp 289 :I T0547 553 :AQSILDT 8abp 291 :RDNFKEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=51809 # 1q9jA.551.393 read from T0547.t2k.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)I551 (1q9jA)G394 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1q9jA)E398 because L (left) conformation "forbidden" or filtered. T0547 552 :EAQ 1q9jA 395 :HIA T0547 556 :ILDT 1q9jA 399 :PGKS Number of specific fragments extracted= 2 number of extra gaps= 2 total=51811 # 1ooyA.552.451 read from T0547.t2k.many.frag # found chain 1ooyA in training set T0547 552 :EAQSILDTL 1ooyA 452 :EGLTVDDIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=51812 # 1l3lA.552.186 read from T0547.t2k.many.frag # found chain 1l3lA in training set T0547 552 :EAQSILDTL 1l3lA 187 :VGKTMEEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51813 # 1q7eA.552.274 read from T0547.t2k.many.frag # found chain 1q7eA in training set Warning: unaligning (T0547)E552 (1q7eA)Q275 because P (beta_P) conformation "forbidden" or filtered. T0547 553 :AQSILDTL 1q7eA 276 :EQNWENTC Number of specific fragments extracted= 1 number of extra gaps= 1 total=51814 # 1zupA.552.135 read from T0547.t2k.many.frag # found chain 1zupA in template set T0547 552 :EAQSILDTL 1zupA 124 :EGKDAMQSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=51815 # 1ntvA.552.120 read from T0547.t2k.many.frag # found chain 1ntvA in training set T0547 552 :EAQSILDTL 1ntvA 143 :TAQAAEPVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=51816 # 1o65A.552.178 read from T0547.t2k.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)E552 (1o65A)S177 because Y (epsilon') conformation "forbidden" or filtered. T0547 553 :AQSILDTL 1o65A 178 :DVTVQEAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=51817 # 1t77A.552.93 read from T0547.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)E552 (1t77A)D2169 because Y (epsilon') conformation "forbidden" or filtered. T0547 553 :AQSILDTL 1t77A 2170 :PATVKKVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=51818 # 1rr7A.552.90 read from T0547.t2k.many.frag # found chain 1rr7A in template set T0547 552 :EAQSILDTL 1rr7A 91 :NGRNVSELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51819 # 1yc61.552.75 read from T0547.t2k.many.frag # found chain 1yc61 in template set T0547 552 :EAQSILDTL 1yc61 111 :KQAQAEAAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=51820 # 1g8mA.552.447 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)E552 (1g8mA)G448 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1g8mA)Q450 because G (3-10) conformation "forbidden" or filtered. T0547 553 :A 1g8mA 449 :Q T0547 555 :SILDTL 1g8mA 451 :SRIHCT Number of specific fragments extracted= 2 number of extra gaps= 2 total=51822 # 1xsvA.552.39 read from T0547.t2k.many.frag # found chain 1xsvA in training set Warning: unaligning (T0547)A553 (1xsvA)D38 because L (left) conformation "forbidden" or filtered. T0547 552 :E 1xsvA 37 :E T0547 554 :QSILDTL 1xsvA 39 :YSLSEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=51824 # 1y7mA.552.7 read from T0547.t2k.many.frag # found chain 1y7mA in template set Warning: unaligning (T0547)A553 (1y7mA)G9 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1y7mA)D10 because P (beta_P) conformation "forbidden" or filtered. T0547 552 :E 1y7mA 8 :Q T0547 555 :SILDTL 1y7mA 11 :TLNSIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=51826 # 1kafA.552.93 read from T0547.t2k.many.frag # found chain 1kafA in training set Warning: unaligning (T0547)E552 (1kafA)S197 because Y (epsilon') conformation "forbidden" or filtered. T0547 553 :AQSILDTL 1kafA 198 :AENIEAVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=51827 # 1i6lA.552.248 read from T0547.t2k.many.frag # found chain 1i6lA in training set Warning: unaligning (T0547)Q554 (1i6lA)Q251 because P (beta_P) conformation "forbidden" or filtered. T0547 552 :EA 1i6lA 249 :SG T0547 555 :SILDTL 1i6lA 252 :SIEELE Number of specific fragments extracted= 2 number of extra gaps= 1 total=51829 # 1tuwA.552.55 read from T0547.t2k.many.frag # found chain 1tuwA in template set T0547 552 :EAQSILDTL 1tuwA 56 :DDDIMERLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=51830 # 2c43A.552.146 read from T0547.t2k.many.frag # found chain 2c43A in template set Warning: unaligning (T0547)Q554 (2c43A)G149 because S (epsilon) conformation "forbidden" or filtered. T0547 552 :EA 2c43A 147 :GR T0547 555 :SILDTL 2c43A 150 :SIPEFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=51832 # 1epuA.552.416 read from T0547.t2k.many.frag # found chain 1epuA in template set T0547 552 :EAQSILDTL 1epuA 417 :SEENLAKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51833 # 1k3sA.552.86 read from T0547.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0547)Q554 (1k3sA)S89 because P (beta_P) conformation "forbidden" or filtered. T0547 552 :EA 1k3sA 87 :QT T0547 555 :SILDTL 1k3sA 90 :TEEEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=51835 # 1k4iA.552.194 read from T0547.t2k.many.frag # found chain 1k4iA in training set T0547 552 :EAQSILDTL 1k4iA 195 :RGDECVAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51836 # 1xkrA.552.190 read from T0547.t2k.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)E552 (1xkrA)K190 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1xkrA)G192 because T (delta_L) conformation "forbidden" or filtered. T0547 553 :A 1xkrA 191 :P T0547 555 :SILDTL 1xkrA 193 :YLVKIF Number of specific fragments extracted= 2 number of extra gaps= 2 total=51838 1b4fA expands to /projects/compbio/data/pdb/1b4f.pdb.gz 1b4fA:# 1b4fA.552.9 read from T0547.t2k.many.frag # adding 1b4fA to template set # found chain 1b4fA in template set T0547 552 :EAQSILDTL 1b4fA 10 :SFNTVDEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51839 # 2a6aA.552.150 read from T0547.t2k.many.frag # found chain 2a6aA in template set T0547 552 :EAQSILDTL 2a6aA 139 :SDEELEEIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51840 1pyaB expands to /projects/compbio/data/pdb/1pya.pdb.gz 1pyaB:# 1pyaB.552.120 read from T0547.t2k.many.frag # adding 1pyaB to template set # found chain 1pyaB in template set T0547 552 :EAQSILDTL 1pyaB 203 :ETPNEDELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51841 1or7A expands to /projects/compbio/data/pdb/1or7.pdb.gz 1or7A:Skipped atom 702, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 704, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 706, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 708, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 710, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 712, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 714, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1018, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1020, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1022, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1024, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1026, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1028, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1318, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1320, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1322, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1324, because occupancy 0.500 <= existing 0.500 in 1or7A # 1or7A.552.154 read from T0547.t2k.many.frag # adding 1or7A to template set # found chain 1or7A in template set Warning: unaligning (T0547)A553 (1or7A)G153 because T (delta_L) conformation "forbidden" or filtered. T0547 552 :E 1or7A 152 :D T0547 554 :QSILDTL 1or7A 154 :LSYEEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=51843 # 1s3sG.552.70 read from T0547.t2k.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)Q554 (1s3sG)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 552 :EA 1s3sG 314 :HS T0547 555 :SILDTL 1s3sG 317 :RISDIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=51845 # 1y42X.552.321 read from T0547.t2k.many.frag # found chain 1y42X in template set Warning: unaligning (T0547)S555 (1y42X)E356 because G (3-10) conformation "forbidden" or filtered. T0547 552 :EAQ 1y42X 353 :SDQ T0547 556 :ILDTL 1y42X 357 :VENLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=51847 # 1vkkA.552.61 read from T0547.t2k.many.frag # found chain 1vkkA in training set Warning: unaligning (T0547)A553 (1vkkA)N51 because L (left) conformation "forbidden" or filtered. T0547 552 :E 1vkkA 50 :Q T0547 554 :QSILDTL 1vkkA 52 :ISPEELK Number of specific fragments extracted= 2 number of extra gaps= 1 total=51849 # 1yb3A.552.125 read from T0547.t2k.many.frag # found chain 1yb3A in training set T0547 552 :EAQSILDTL 1yb3A 118 :HPISGDEVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=51850 # 2fa1A.552.69 read from T0547.t2k.many.frag # found chain 2fa1A in training set Warning: unaligning (T0547)A553 (2fa1A)D152 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)I556 (2fa1A)L155 because G (3-10) conformation "forbidden" or filtered. T0547 552 :E 2fa1A 151 :A T0547 554 :QS 2fa1A 153 :LT T0547 557 :LDTL 2fa1A 156 :WPTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=51853 # 1m15A.552.234 read from T0547.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)A553 (1m15A)G236 because S (epsilon) conformation "forbidden" or filtered. T0547 552 :E 1m15A 235 :K T0547 554 :QSILDTL 1m15A 237 :GDLKTVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=51855 # 1l3lA.553.187 read from T0547.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)A553 (1l3lA)G188 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1l3lA)K189 because P (beta_P) conformation "forbidden" or filtered. T0547 555 :SILDTLE 1l3lA 190 :TMEEIAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=51856 # 1q7eA.553.275 read from T0547.t2k.many.frag # found chain 1q7eA in training set T0547 553 :AQSILDTLE 1q7eA 276 :EQNWENTCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=51857 # 1ntvA.553.121 read from T0547.t2k.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)Q554 (1ntvA)Q145 because Y (epsilon') conformation "forbidden" or filtered. T0547 553 :A 1ntvA 144 :A T0547 555 :SILDTLE 1ntvA 146 :AAEPVIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=51859 # 1t77A.553.94 read from T0547.t2k.many.frag # found chain 1t77A in template set T0547 553 :AQSILDTLE 1t77A 2170 :PATVKKVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=51860 # 1i6lA.553.249 read from T0547.t2k.many.frag # found chain 1i6lA in training set Warning: unaligning (T0547)A553 (1i6lA)G250 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1i6lA)Q251 because P (beta_P) conformation "forbidden" or filtered. T0547 555 :SILDTLE 1i6lA 252 :SIEELER Number of specific fragments extracted= 1 number of extra gaps= 1 total=51861 # 1o65A.553.179 read from T0547.t2k.many.frag # found chain 1o65A in template set T0547 553 :AQSILDTLE 1o65A 178 :DVTVQEAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51862 # 1xsvA.553.40 read from T0547.t2k.many.frag # found chain 1xsvA in training set Warning: unaligning (T0547)A553 (1xsvA)D38 because L (left) conformation "forbidden" or filtered. T0547 554 :QSILDTLE 1xsvA 39 :YSLSEIAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=51863 # 1zupA.553.136 read from T0547.t2k.many.frag # found chain 1zupA in template set T0547 553 :AQSILDTLE 1zupA 125 :GKDAMQSID Number of specific fragments extracted= 1 number of extra gaps= 0 total=51864 # 1ooyA.553.452 read from T0547.t2k.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. T0547 554 :QSILDTLE 1ooyA 454 :LTVDDIKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=51865 # 2c43A.553.147 read from T0547.t2k.many.frag # found chain 2c43A in template set T0547 553 :AQSILDTLE 2c43A 148 :RGSIPEFFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=51866 # 1y7mA.553.8 read from T0547.t2k.many.frag # found chain 1y7mA in template set Warning: unaligning (T0547)A553 (1y7mA)G9 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1y7mA)T11 because P (beta_P) conformation "forbidden" or filtered. T0547 554 :Q 1y7mA 10 :D T0547 556 :ILDTLE 1y7mA 12 :LNSIAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=51868 # 1kafA.553.94 read from T0547.t2k.many.frag # found chain 1kafA in training set T0547 553 :AQSILDTLE 1kafA 198 :AENIEAVIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51869 # 1ywfA.553.269 read from T0547.t2k.many.frag # found chain 1ywfA in template set T0547 553 :AQSILDTLE 1ywfA 250 :YGSLGGYLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=51870 # 1yc61.553.76 read from T0547.t2k.many.frag # found chain 1yc61 in template set T0547 553 :AQSILDTLE 1yc61 112 :QAQAEAAFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=51871 # 1h0hB.553.109 read from T0547.t2k.many.frag # found chain 1h0hB in training set T0547 553 :AQSILDTLE 1h0hB 110 :LEDYESVIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=51872 # 1epuA.553.417 read from T0547.t2k.many.frag # found chain 1epuA in template set T0547 553 :AQSILDTLE 1epuA 418 :EENLAKLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=51873 # 1rr7A.553.91 read from T0547.t2k.many.frag # found chain 1rr7A in template set T0547 553 :AQSILDTLE 1rr7A 92 :GRNVSELTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51874 # 1sw5B.553.226 read from T0547.t2k.many.frag # found chain 1sw5B in template set T0547 553 :AQSILDTLE 1sw5B 227 :DEKLISVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=51875 # 1or7A.553.155 read from T0547.t2k.many.frag # found chain 1or7A in template set Warning: unaligning (T0547)A553 (1or7A)G153 because T (delta_L) conformation "forbidden" or filtered. T0547 554 :QSILDTLE 1or7A 154 :LSYEEIAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=51876 # 1pyaB.553.121 read from T0547.t2k.many.frag # found chain 1pyaB in template set T0547 553 :AQSILDTLE 1pyaB 204 :TPNEDELLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51877 # 2bvcA.553.427 read from T0547.t2k.many.frag # found chain 2bvcA in template set T0547 553 :AQSILDTLE 2bvcA 420 :PTQLSDVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=51878 # 1o0sA.553.386 read from T0547.t2k.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)A553 (1o0sA)T387 because Y (epsilon') conformation "forbidden" or filtered. T0547 554 :QSILDTLE 1o0sA 388 :TSILEVIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=51879 1xewX expands to /projects/compbio/data/pdb/1xew.pdb.gz 1xewX:# 1xewX.553.122 read from T0547.t2k.many.frag # adding 1xewX to template set # found chain 1xewX in template set T0547 553 :AQSILDTLE 1xewX 123 :RSEILDILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51880 2bnxA expands to /projects/compbio/data/pdb/2bnx.pdb.gz 2bnxA:Skipped atom 683, because occupancy 0.500 <= existing 0.500 in 2bnxA Skipped atom 684, because occupancy 0.500 <= existing 0.500 in 2bnxA Skipped atom 685, because occupancy 0.500 <= existing 0.500 in 2bnxA Skipped atom 686, because occupancy 0.500 <= existing 0.500 in 2bnxA Skipped atom 687, because occupancy 0.500 <= existing 0.500 in 2bnxA Skipped atom 688, because occupancy 0.500 <= existing 0.500 in 2bnxA Skipped atom 689, because occupancy 0.500 <= existing 0.500 in 2bnxA Skipped atom 690, because occupancy 0.500 <= existing 0.500 in 2bnxA Skipped atom 2236, because occupancy 0.500 <= existing 0.500 in 2bnxA Skipped atom 2237, because occupancy 0.500 <= existing 0.500 in 2bnxA Skipped atom 2238, because occupancy 0.500 <= existing 0.500 in 2bnxA Skipped atom 2239, because occupancy 0.500 <= existing 0.500 in 2bnxA Skipped atom 2240, because occupancy 0.500 <= existing 0.500 in 2bnxA Skipped atom 2241, because occupancy 0.500 <= existing 0.500 in 2bnxA Skipped atom 2242, because occupancy 0.500 <= existing 0.500 in 2bnxA # 2bnxA.553.215 read from T0547.t2k.many.frag # adding 2bnxA to template set # found chain 2bnxA in template set T0547 553 :AQSILDTLE 2bnxA 346 :NEDMKVQLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=51881 # 1k4iA.553.195 read from T0547.t2k.many.frag # found chain 1k4iA in training set Warning: unaligning (T0547)A553 (1k4iA)G196 because S (epsilon) conformation "forbidden" or filtered. T0547 554 :QSILDTLE 1k4iA 197 :DECVAFAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=51882 # 1g8mA.553.448 read from T0547.t2k.many.frag # found chain 1g8mA in training set T0547 553 :AQSILDTLE 1g8mA 449 :QQSRIHCTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=51883 # 1qgiA.553.182 read from T0547.t2k.many.frag # found chain 1qgiA in training set T0547 553 :AQSILDTLE 1qgiA 183 :SDTLQGLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51884 1i3jA expands to /projects/compbio/data/pdb/1i3j.pdb.gz 1i3jA:Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 1i3jA Skipped atom 892, because occupancy 0.500 <= existing 0.500 in 1i3jA Skipped atom 894, because occupancy 0.500 <= existing 0.500 in 1i3jA Skipped atom 896, because occupancy 0.500 <= existing 0.500 in 1i3jA Skipped atom 1077, because occupancy 0.500 <= existing 0.500 in 1i3jA Skipped atom 1469, because occupancy 0.500 <= existing 0.500 in 1i3jA Skipped atom 1532, because occupancy 0.500 <= existing 0.500 in 1i3jA Skipped atom 1534, because occupancy 0.500 <= existing 0.500 in 1i3jA Skipped atom 1536, because occupancy 0.500 <= existing 0.500 in 1i3jA Skipped atom 1538, because occupancy 0.500 <= existing 0.500 in 1i3jA Skipped atom 1551, because occupancy 0.500 <= existing 0.500 in 1i3jA Skipped atom 1553, because occupancy 0.500 <= existing 0.500 in 1i3jA Skipped atom 1555, because occupancy 0.500 <= existing 0.500 in 1i3jA # 1i3jA.553.82 read from T0547.t2k.many.frag # adding 1i3jA to template set # found chain 1i3jA in template set Warning: unaligning (T0547)S555 (1i3jA)C214 because Y (epsilon') conformation "forbidden" or filtered. T0547 553 :AQ 1i3jA 212 :FD T0547 556 :ILDTLE 1i3jA 215 :AADAAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=51886 # 1r9jA.553.629 read from T0547.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)Q554 (1r9jA)A629 because Y (epsilon') conformation "forbidden" or filtered. T0547 553 :A 1r9jA 628 :S T0547 555 :SILDTLE 1r9jA 630 :PAGVLYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=51888 # 1ta8A.553.236 read from T0547.t2k.many.frag # found chain 1ta8A in training set T0547 553 :AQSILDTLE 1ta8A 237 :AKTQFEALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51889 # 1l3lA.554.188 read from T0547.t2k.many.frag # found chain 1l3lA in training set T0547 554 :QSILDTLED 1l3lA 189 :KTMEEIADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51890 # 1q7eA.554.276 read from T0547.t2k.many.frag # found chain 1q7eA in training set T0547 554 :QSILDTLED 1q7eA 277 :QNWENTCKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51891 # 1t77A.554.95 read from T0547.t2k.many.frag # found chain 1t77A in template set T0547 554 :QSILDTLED 1t77A 2171 :ATVKKVVNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=51892 # 1xsvA.554.41 read from T0547.t2k.many.frag # found chain 1xsvA in training set T0547 554 :QSILDTLED 1xsvA 39 :YSLSEIADT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51893 # 1h0hB.554.110 read from T0547.t2k.many.frag # found chain 1h0hB in training set T0547 554 :QSILDTLED 1h0hB 111 :EDYESVISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51894 # 1ywfA.554.270 read from T0547.t2k.many.frag # found chain 1ywfA in template set Warning: unaligning (T0547)Q554 (1ywfA)G251 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. T0547 556 :ILDTLED 1ywfA 253 :LGGYLRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=51895 # 1or7A.554.156 read from T0547.t2k.many.frag # found chain 1or7A in template set Warning: unaligning (T0547)Q554 (1or7A)L154 because P (beta_P) conformation "forbidden" or filtered. T0547 555 :SILDTLED 1or7A 155 :SYEEIAAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=51896 # 1ntvA.554.122 read from T0547.t2k.many.frag # found chain 1ntvA in training set T0547 554 :QSILDTLED 1ntvA 145 :QAAEPVILD Number of specific fragments extracted= 1 number of extra gaps= 0 total=51897 # 1epuA.554.418 read from T0547.t2k.many.frag # found chain 1epuA in template set T0547 554 :QSILDTLED 1epuA 419 :ENLAKLVQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=51898 # 1i6lA.554.250 read from T0547.t2k.many.frag # found chain 1i6lA in training set T0547 554 :QSILDTLED 1i6lA 251 :QSIEELERQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=51899 # 1pyaB.554.122 read from T0547.t2k.many.frag # found chain 1pyaB in template set T0547 554 :QSILDTLED 1pyaB 205 :PNEDELLEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=51900 # 1us5A.554.258 read from T0547.t2k.many.frag # found chain 1us5A in training set T0547 554 :QSILDTLED 1us5A 259 :ETVYKFMKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51901 # 1o65A.554.180 read from T0547.t2k.many.frag # found chain 1o65A in template set T0547 554 :QSILDTLED 1o65A 179 :VTVQEAAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=51902 # 2bvcA.554.428 read from T0547.t2k.many.frag # found chain 2bvcA in template set Warning: unaligning (T0547)S555 (2bvcA)Q422 because Y (epsilon') conformation "forbidden" or filtered. T0547 554 :Q 2bvcA 421 :T T0547 556 :ILDTLED 2bvcA 423 :LSDVIDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=51904 1tr8A expands to /projects/compbio/data/pdb/1tr8.pdb.gz 1tr8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1tr8A.554.66 read from T0547.t2k.many.frag # adding 1tr8A to template set # found chain 1tr8A in template set T0547 554 :QSILDTLED 1tr8A 82 :DDIELVMNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=51905 # 1y7mA.554.9 read from T0547.t2k.many.frag # found chain 1y7mA in template set T0547 554 :QSILDTLED 1y7mA 10 :DTLNSIAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=51906 # 1kafA.554.95 read from T0547.t2k.many.frag # found chain 1kafA in training set T0547 554 :QSILDTLED 1kafA 199 :ENIEAVITV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51907 # 1usyA.554.144 read from T0547.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)S555 (1usyA)L146 because G (3-10) conformation "forbidden" or filtered. T0547 554 :Q 1usyA 145 :D T0547 556 :ILDTLED 1usyA 147 :HEKVLNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=51909 # 1ooyA.554.453 read from T0547.t2k.many.frag # found chain 1ooyA in training set T0547 554 :QSILDTLED 1ooyA 454 :LTVDDIKKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=51910 # 2c43A.554.148 read from T0547.t2k.many.frag # found chain 2c43A in template set Warning: unaligning (T0547)Q554 (2c43A)G149 because S (epsilon) conformation "forbidden" or filtered. T0547 555 :SILDTLED 2c43A 150 :SIPEFFHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=51911 # 1sw5B.554.227 read from T0547.t2k.many.frag # found chain 1sw5B in template set T0547 554 :QSILDTLED 1sw5B 228 :EKLISVLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51912 # 1yb3A.554.127 read from T0547.t2k.many.frag # found chain 1yb3A in training set Warning: unaligning (T0547)Q554 (1yb3A)I120 because E (beta_S) conformation "forbidden" or filtered. T0547 555 :SILDTLED 1yb3A 121 :SGDEVWDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=51913 # 1qgiA.554.183 read from T0547.t2k.many.frag # found chain 1qgiA in training set T0547 554 :QSILDTLED 1qgiA 184 :DTLQGLLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=51914 # 2bnxA.554.216 read from T0547.t2k.many.frag # found chain 2bnxA in template set T0547 554 :QSILDTLED 2bnxA 347 :EDMKVQLCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51915 # 1zupA.554.137 read from T0547.t2k.many.frag # found chain 1zupA in template set T0547 554 :QSILDTLED 1zupA 126 :KDAMQSIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51916 # 1i3jA.554.83 read from T0547.t2k.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)S555 (1i3jA)C214 because Y (epsilon') conformation "forbidden" or filtered. T0547 554 :Q 1i3jA 213 :D T0547 556 :ILDTLED 1i3jA 215 :AADAARH Number of specific fragments extracted= 2 number of extra gaps= 1 total=51918 # 1ta8A.554.237 read from T0547.t2k.many.frag # found chain 1ta8A in training set T0547 554 :QSILDTLED 1ta8A 238 :KTQFEALEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51919 # 1fs7A.554.423 read from T0547.t2k.many.frag # found chain 1fs7A in training set T0547 554 :QSILDTLED 1fs7A 446 :ETKEKAQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51920 # 1ku3A.554.30 read from T0547.t2k.many.frag # found chain 1ku3A in training set T0547 554 :QSILDTLED 1ku3A 396 :HTLEEVGAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=51921 1upkA expands to /projects/compbio/data/pdb/1upk.pdb.gz 1upkA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 529, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 530, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 531, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 532, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 533, because occupancy 0.500 <= existing 0.500 in 1upkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 944, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 945, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 946, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 947, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 948, because occupancy 0.500 <= existing 0.500 in 1upkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1076, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1077, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1078, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1079, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1080, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1172, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1173, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1174, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1175, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1176, because occupancy 0.500 <= existing 0.500 in 1upkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1277, because occupancy 0.250 <= existing 0.750 in 1upkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1278, because occupancy 0.250 <= existing 0.750 in 1upkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1279, because occupancy 0.250 <= existing 0.750 in 1upkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1280, because occupancy 0.250 <= existing 0.750 in 1upkA Skipped atom 1471, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1472, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1623, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1624, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1625, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1626, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1627, because occupancy 0.500 <= existing 0.500 in 1upkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1904, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1905, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1906, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1907, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1984, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1985, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 1986, because occupancy 0.500 <= existing 0.500 in 1upkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2438, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 2439, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 2440, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 2441, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 2470, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 2471, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 2472, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 2473, because occupancy 0.500 <= existing 0.500 in 1upkA Skipped atom 2474, because occupancy 0.500 <= existing 0.500 in 1upkA # 1upkA.554.285 read from T0547.t2k.many.frag # adding 1upkA to template set # found chain 1upkA in template set T0547 554 :QSILDTLED 1upkA 286 :NKTQPILDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=51922 # 1l3lA.555.189 read from T0547.t2k.many.frag # found chain 1l3lA in training set T0547 555 :SILDTLEDL 1l3lA 190 :TMEEIADVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51923 # 1q7eA.555.277 read from T0547.t2k.many.frag # found chain 1q7eA in training set Warning: unaligning (T0547)S555 (1q7eA)N278 because G (3-10) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1q7eA 279 :WENTCKAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=51924 # 1xsvA.555.42 read from T0547.t2k.many.frag # found chain 1xsvA in training set T0547 555 :SILDTLEDL 1xsvA 40 :SLSEIADTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=51925 # 1sw5B.555.228 read from T0547.t2k.many.frag # found chain 1sw5B in template set T0547 555 :SILDTLEDL 1sw5B 229 :KLISVLKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51926 # 1ywfA.555.271 read from T0547.t2k.many.frag # found chain 1ywfA in template set T0547 555 :SILDTLEDL 1ywfA 252 :SLGGYLRDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51927 # 1t77A.555.96 read from T0547.t2k.many.frag # found chain 1t77A in template set T0547 555 :SILDTLEDL 1t77A 2172 :TVKKVVNFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51928 # 1us5A.555.259 read from T0547.t2k.many.frag # found chain 1us5A in training set T0547 555 :SILDTLEDL 1us5A 260 :TVYKFMKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51929 # 1epuA.555.419 read from T0547.t2k.many.frag # found chain 1epuA in template set T0547 555 :SILDTLEDL 1epuA 420 :NLAKLVQHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51930 # 1h0hB.555.111 read from T0547.t2k.many.frag # found chain 1h0hB in training set T0547 555 :SILDTLEDL 1h0hB 112 :DYESVISAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=51931 # 1or7A.555.157 read from T0547.t2k.many.frag # found chain 1or7A in template set T0547 555 :SILDTLEDL 1or7A 155 :SYEEIAAIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=51932 # 2bnxA.555.217 read from T0547.t2k.many.frag # found chain 2bnxA in template set T0547 555 :SILDTLEDL 2bnxA 348 :DMKVQLCVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=51933 # 2bvcA.555.429 read from T0547.t2k.many.frag # found chain 2bvcA in template set T0547 555 :SILDTLEDL 2bvcA 422 :QLSDVIDRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51934 # 1pyaB.555.123 read from T0547.t2k.many.frag # found chain 1pyaB in template set T0547 555 :SILDTLEDL 1pyaB 206 :NEDELLEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51935 # 1whzA.555.51 read from T0547.t2k.many.frag # found chain 1whzA in training set T0547 555 :SILDTLEDL 1whzA 52 :TFKRILRDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51936 # 1d8hA.555.262 read from T0547.t2k.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 558 :DTLEDL 1d8hA 504 :NAFDNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=51937 # 1ta8A.555.238 read from T0547.t2k.many.frag # found chain 1ta8A in training set T0547 555 :SILDTLEDL 1ta8A 239 :TQFEALEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51938 # 2c43A.555.149 read from T0547.t2k.many.frag # found chain 2c43A in template set T0547 555 :SILDTLEDL 2c43A 150 :SIPEFFHIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=51939 # 1tr8A.555.67 read from T0547.t2k.many.frag # found chain 1tr8A in template set T0547 555 :SILDTLEDL 1tr8A 83 :DIELVMNQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=51940 # 1qgiA.555.184 read from T0547.t2k.many.frag # found chain 1qgiA in training set T0547 555 :SILDTLEDL 1qgiA 185 :TLQGLLARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=51941 # 1xewX.555.124 read from T0547.t2k.many.frag # found chain 1xewX in template set T0547 555 :SILDTLEDL 1xewX 125 :EILDILTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51942 # 1i3jA.555.84 read from T0547.t2k.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)S555 (1i3jA)C214 because Y (epsilon') conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1i3jA 215 :AADAARHF Number of specific fragments extracted= 1 number of extra gaps= 1 total=51943 # 1y7mA.555.10 read from T0547.t2k.many.frag # found chain 1y7mA in template set T0547 555 :SILDTLEDL 1y7mA 11 :TLNSIAADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=51944 # 1i6lA.555.251 read from T0547.t2k.many.frag # found chain 1i6lA in training set T0547 555 :SILDTLEDL 1i6lA 252 :SIEELERQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=51945 # 1kafA.555.96 read from T0547.t2k.many.frag # found chain 1kafA in training set T0547 555 :SILDTLEDL 1kafA 200 :NIEAVITVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51946 1k8kD expands to /projects/compbio/data/pdb/1k8k.pdb.gz 1k8kD:# 1k8kD.555.235 read from T0547.t2k.many.frag # adding 1k8kD to template set # found chain 1k8kD in template set T0547 555 :SILDTLEDL 1k8kD 236 :ARDNTINLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=51947 # 1k6kA.555.38 read from T0547.t2k.many.frag # found chain 1k6kA in training set T0547 555 :SILDTLEDL 1k6kA 39 :SAREALEAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=51948 # 1k4iA.555.197 read from T0547.t2k.many.frag # found chain 1k4iA in training set T0547 555 :SILDTLEDL 1k4iA 198 :ECVAFARRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=51949 # 1r9jA.555.631 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 555 :SILDTLEDL 1r9jA 630 :PAGVLYKKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=51950 # 1k3rA.555.172 read from T0547.t2k.many.frag # found chain 1k3rA in template set T0547 555 :SILDTLEDL 1k3rA 173 :NLAESLKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51951 # 1o65A.555.181 read from T0547.t2k.many.frag # found chain 1o65A in template set T0547 555 :SILDTLEDL 1o65A 180 :TVQEAAAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=51952 # 1xsvA.556.43 read from T0547.t2k.many.frag # found chain 1xsvA in training set Warning: unaligning (T0547)D564 (1xsvA)N49 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1xsvA 41 :LSEIADTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=51953 # 1or7A.556.158 read from T0547.t2k.many.frag # found chain 1or7A in template set T0547 556 :ILDTLEDLD 1or7A 156 :YEEIAAIMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=51954 # 1l3lA.556.190 read from T0547.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D564 (1l3lA)G199 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1l3lA 191 :MEEIADVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=51955 # 1epuA.556.420 read from T0547.t2k.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)D564 (1epuA)H429 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1epuA 421 :LAKLVQHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=51956 # 1us5A.556.260 read from T0547.t2k.many.frag # found chain 1us5A in training set T0547 556 :ILDTLEDLD 1us5A 261 :VYKFMKAVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=51957 # 1q7eA.556.278 read from T0547.t2k.many.frag # found chain 1q7eA in training set Warning: unaligning (T0547)D564 (1q7eA)G287 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1q7eA 279 :WENTCKAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=51958 # 1ywfA.556.272 read from T0547.t2k.many.frag # found chain 1ywfA in template set T0547 556 :ILDTLEDLD 1ywfA 253 :LGGYLRDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=51959 # 2bnxA.556.218 read from T0547.t2k.many.frag # found chain 2bnxA in template set T0547 556 :ILDTLEDLD 2bnxA 349 :MKVQLCVFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=51960 # 1u8bA.556.95 read from T0547.t2k.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 T0547 556 :ILDTLEDL 1u8bA 102 :LEALADQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51961 # 1whzA.556.52 read from T0547.t2k.many.frag # found chain 1whzA in training set Warning: unaligning (T0547)D564 (1whzA)G61 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1whzA 53 :FKRILRDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=51962 # 1h0hB.556.112 read from T0547.t2k.many.frag # found chain 1h0hB in training set T0547 556 :ILDTLEDLD 1h0hB 113 :YESVISACP Number of specific fragments extracted= 1 number of extra gaps= 0 total=51963 # 1sw5B.556.229 read from T0547.t2k.many.frag # found chain 1sw5B in template set T0547 556 :ILDTLEDLD 1sw5B 230 :LISVLKLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51964 # 1t77A.556.97 read from T0547.t2k.many.frag # found chain 1t77A in template set T0547 556 :ILDTLEDLD 1t77A 2173 :VKKVVNFLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=51965 # 1r9jA.556.632 read from T0547.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)D564 (1r9jA)G639 because T (delta_L) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1r9jA 631 :AGVLYKKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=51966 # 1tr8A.556.68 read from T0547.t2k.many.frag # found chain 1tr8A in template set Warning: unaligning (T0547)D564 (1tr8A)G92 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1tr8A 84 :IELVMNQT Number of specific fragments extracted= 1 number of extra gaps= 1 total=51967 # 1pyaB.556.124 read from T0547.t2k.many.frag # found chain 1pyaB in template set T0547 556 :ILDTLEDLD 1pyaB 207 :EDELLEYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51968 # 1fs7A.556.425 read from T0547.t2k.many.frag # found chain 1fs7A in training set Warning: unaligning (T0547)D564 (1fs7A)K456 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1fs7A 448 :KEKAQKLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=51969 # 1i3jA.556.85 read from T0547.t2k.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)D564 (1i3jA)K223 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1i3jA 215 :AADAARHF Number of specific fragments extracted= 1 number of extra gaps= 1 total=51970 # 1ku3A.556.32 read from T0547.t2k.many.frag # found chain 1ku3A in training set Warning: unaligning (T0547)D564 (1ku3A)G406 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1ku3A 398 :LEEVGAYF Number of specific fragments extracted= 1 number of extra gaps= 1 total=51971 2ao9A expands to /projects/compbio/data/pdb/2ao9.pdb.gz 2ao9A:# 2ao9A.556.50 read from T0547.t2k.many.frag # adding 2ao9A to template set # found chain 2ao9A in template set T0547 556 :ILDTLEDLD 2ao9A 51 :QDEMANELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=51972 # 2bvcA.556.430 read from T0547.t2k.many.frag # found chain 2bvcA in template set T0547 556 :ILDTLEDLD 2bvcA 423 :LSDVIDRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51973 # 1k3rA.556.173 read from T0547.t2k.many.frag # found chain 1k3rA in template set T0547 556 :ILDTLEDLD 1k3rA 174 :LAESLKTVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=51974 # 1d8hA.556.263 read from T0547.t2k.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 558 :DTLEDLD 1d8hA 504 :NAFDNIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=51975 # 1aisB.556.167 read from T0547.t2k.many.frag # found chain 1aisB in template set Warning: unaligning (T0547)D564 (1aisB)R1276 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1aisB 1268 :QREVAEVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=51976 # 1nlnA.556.76 read from T0547.t2k.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)D564 (1nlnA)Q85 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1nlnA 77 :DQRLKQVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=51977 # 1qgiA.556.185 read from T0547.t2k.many.frag # found chain 1qgiA in training set T0547 556 :ILDTLEDLD 1qgiA 186 :LQGLLARSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=51978 # 1mdc.556.15 read from T0547.t2k.many.frag # found chain 1mdc in training set Warning: unaligning (T0547)D564 (1mdc)G23 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1mdc 15 :FDGFLKSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=51979 # 1i6lA.556.252 read from T0547.t2k.many.frag # found chain 1i6lA in training set T0547 556 :ILDTLEDLD 1i6lA 253 :IEELERQYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51980 # 1y7mA.556.11 read from T0547.t2k.many.frag # found chain 1y7mA in template set Warning: unaligning (T0547)D564 (1y7mA)R20 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1y7mA 12 :LNSIAADF Number of specific fragments extracted= 1 number of extra gaps= 1 total=51981 # 1k8kD.556.236 read from T0547.t2k.many.frag # found chain 1k8kD in template set T0547 556 :ILDTLEDLD 1k8kD 237 :RDNTINLIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=51982 # 1epuA.557.421 read from T0547.t2k.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)D564 (1epuA)H429 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1epuA 422 :AKLVQHA T0547 565 :Y 1epuA 430 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=51984 # 1or7A.557.159 read from T0547.t2k.many.frag # found chain 1or7A in template set T0547 557 :LDTLEDLDY 1or7A 157 :EEIAAIMDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=51985 # 1ywfA.557.273 read from T0547.t2k.many.frag # found chain 1ywfA in template set T0547 557 :LDTLEDLDY 1ywfA 254 :GGYLRDAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=51986 # 1xsvA.557.44 read from T0547.t2k.many.frag # found chain 1xsvA in training set Warning: unaligning (T0547)D564 (1xsvA)N49 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1xsvA)V50 because Y (epsilon') conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1xsvA 42 :SEIADTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=51987 # 1whzA.557.53 read from T0547.t2k.many.frag # found chain 1whzA in training set T0547 557 :LDTLEDLDY 1whzA 54 :KRILRDAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=51988 # 1us5A.557.261 read from T0547.t2k.many.frag # found chain 1us5A in training set T0547 557 :LDTLEDLDY 1us5A 262 :YKFMKAVFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=51989 # 1h0hB.557.113 read from T0547.t2k.many.frag # found chain 1h0hB in training set T0547 557 :LDTLEDLDY 1h0hB 114 :ESVISACPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=51990 # 2bnxA.557.219 read from T0547.t2k.many.frag # found chain 2bnxA in template set T0547 557 :LDTLEDLDY 2bnxA 350 :KVQLCVFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51991 # 1r9jA.557.633 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 557 :LDTLEDLDY 1r9jA 632 :GVLYKKFGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=51992 # 1u8bA.557.96 read from T0547.t2k.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 T0547 557 :LDTLEDL 1u8bA 103 :EALADQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=51993 # 1l3lA.557.191 read from T0547.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D564 (1l3lA)G199 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1l3lA 192 :EEIADVE T0547 565 :Y 1l3lA 200 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=51995 # 2ao9A.557.51 read from T0547.t2k.many.frag # found chain 2ao9A in template set Warning: unaligning (T0547)D564 (2ao9A)G59 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 2ao9A 52 :DEMANEL T0547 565 :Y 2ao9A 60 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=51997 # 1i3jA.557.86 read from T0547.t2k.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)D564 (1i3jA)K223 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1i3jA)I224 because Y (epsilon') conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1i3jA 216 :ADAARHF Number of specific fragments extracted= 1 number of extra gaps= 1 total=51998 # 1tr8A.557.69 read from T0547.t2k.many.frag # found chain 1tr8A in template set Warning: unaligning (T0547)D564 (1tr8A)G92 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1tr8A 85 :ELVMNQT T0547 565 :Y 1tr8A 93 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=52000 # 1q7eA.557.279 read from T0547.t2k.many.frag # found chain 1q7eA in training set T0547 557 :LDTLEDLDY 1q7eA 280 :ENTCKAIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52001 # 1fs7A.557.426 read from T0547.t2k.many.frag # found chain 1fs7A in training set Warning: unaligning (T0547)D564 (1fs7A)K456 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1fs7A 449 :EKAQKLA T0547 565 :Y 1fs7A 457 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=52003 # 1ku3A.557.33 read from T0547.t2k.many.frag # found chain 1ku3A in training set T0547 557 :LDTLEDLDY 1ku3A 399 :EEVGAYFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52004 # 1k3rA.557.174 read from T0547.t2k.many.frag # found chain 1k3rA in template set Warning: unaligning (T0547)D564 (1k3rA)G182 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1k3rA 175 :AESLKTV T0547 565 :Y 1k3rA 183 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=52006 # 1k6kA.557.40 read from T0547.t2k.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)S48 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1k6kA 41 :REALEAC T0547 565 :Y 1k6kA 49 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=52008 1j54A expands to /projects/compbio/data/pdb/1j54.pdb.gz 1j54A:# 1j54A.557.59 read from T0547.t2k.many.frag # adding 1j54A to template set # found chain 1j54A in template set Warning: unaligning (T0547)D564 (1j54A)G67 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1j54A 60 :PEAFGVH T0547 565 :Y 1j54A 68 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=52010 # 1nlnA.557.77 read from T0547.t2k.many.frag # found chain 1nlnA in training set T0547 557 :LDTLEDLDY 1nlnA 78 :QRLKQVYQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52011 # 1pyaB.557.125 read from T0547.t2k.many.frag # found chain 1pyaB in template set T0547 557 :LDTLEDLDY 1pyaB 208 :DELLEYLEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52012 1fipA expands to /projects/compbio/data/pdb/1fip.pdb.gz 1fipA:# 1fipA.557.74 read from T0547.t2k.many.frag # adding 1fipA to template set # found chain 1fipA in template set T0547 557 :LDTLEDLDY 1fipA 75 :TRAALMMGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52013 # 2bvcA.557.431 read from T0547.t2k.many.frag # found chain 2bvcA in template set T0547 557 :LDTLEDLDY 2bvcA 424 :SDVIDRLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52014 # 1aisB.557.168 read from T0547.t2k.many.frag # found chain 1aisB in template set Warning: unaligning (T0547)D564 (1aisB)R1276 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1aisB 1269 :REVAEVA T0547 565 :Y 1aisB 1277 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=52016 1u3eM expands to /projects/compbio/data/pdb/1u3e.pdb.gz 1u3eM:# 1u3eM.557.138 read from T0547.t2k.many.frag # adding 1u3eM to template set # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1u3eM 139 :KCACEEL T0547 565 :Y 1u3eM 147 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=52018 # 1d8hA.557.264 read from T0547.t2k.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 558 :DTLEDLDY 1d8hA 504 :NAFDNITN Number of specific fragments extracted= 1 number of extra gaps= 1 total=52019 # 1mdc.557.16 read from T0547.t2k.many.frag # found chain 1mdc in training set Warning: unaligning (T0547)D564 (1mdc)G23 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1mdc 16 :DGFLKSA T0547 565 :Y 1mdc 24 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=52021 # 1y7mA.557.12 read from T0547.t2k.many.frag # found chain 1y7mA in template set Warning: unaligning (T0547)Y565 (1y7mA)I21 because Y (epsilon') conformation "forbidden" or filtered. T0547 557 :LDTLEDLD 1y7mA 13 :NSIAADFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=52022 # 1k6kA.557.120 read from T0547.t2k.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)E128 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1k6kA 121 :AYLLRKH T0547 565 :Y 1k6kA 129 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=52024 # 1or7A.558.160 read from T0547.t2k.many.frag # found chain 1or7A in template set T0547 558 :DTLEDLDYD 1or7A 158 :EIAAIMDCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=52025 # 2ao9A.558.52 read from T0547.t2k.many.frag # found chain 2ao9A in template set Warning: unaligning (T0547)D564 (2ao9A)G59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (2ao9A)N61 because P (beta_P) conformation "forbidden" or filtered. T0547 558 :DTLEDL 2ao9A 53 :EMANEL T0547 565 :Y 2ao9A 60 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=52027 # 1r9jA.558.634 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 558 :DTLEDLDYD 1r9jA 633 :VLYKKFGIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52028 # 1epuA.558.422 read from T0547.t2k.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)D564 (1epuA)H429 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1epuA 423 :KLVQHA T0547 565 :YD 1epuA 430 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=52030 # 1fipA.558.75 read from T0547.t2k.many.frag # found chain 1fipA in template set T0547 558 :DTLEDLDYD 1fipA 76 :RAALMMGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52031 # 1u3eM.558.139 read from T0547.t2k.many.frag # found chain 1u3eM in template set T0547 558 :DTLEDLDYD 1u3eM 140 :CACEELGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52032 # 1u8bA.558.97 read from T0547.t2k.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 558 :DTLEDL 1u8bA 104 :ALADQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52033 # 1xsvA.558.45 read from T0547.t2k.many.frag # found chain 1xsvA in training set Warning: unaligning (T0547)Y565 (1xsvA)V50 because Y (epsilon') conformation "forbidden" or filtered. T0547 558 :DTLEDLD 1xsvA 43 :EIADTFN T0547 566 :D 1xsvA 51 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=52035 # 1whzA.558.54 read from T0547.t2k.many.frag # found chain 1whzA in training set Warning: unaligning (T0547)D564 (1whzA)G61 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1whzA 55 :RILRDA T0547 565 :YD 1whzA 62 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=52037 # 1fs7A.558.427 read from T0547.t2k.many.frag # found chain 1fs7A in training set Warning: unaligning (T0547)D564 (1fs7A)K456 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1fs7A 450 :KAQKLA T0547 565 :YD 1fs7A 457 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=52039 # 1us5A.558.262 read from T0547.t2k.many.frag # found chain 1us5A in training set T0547 558 :DTLEDLDYD 1us5A 263 :KFMKAVFGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52040 # 1i3jA.558.87 read from T0547.t2k.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)D564 (1i3jA)K223 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1i3jA 217 :DAARHF T0547 565 :YD 1i3jA 224 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=52042 # 1aisB.558.169 read from T0547.t2k.many.frag # found chain 1aisB in template set T0547 558 :DTLEDLDYD 1aisB 1270 :EVAEVARVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52043 # 2b5aA.558.56 read from T0547.t2k.many.frag # found chain 2b5aA in training set T0547 558 :DTLEDLDYD 2b5aA 57 :KICAALDIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=52044 # 1nlnA.558.78 read from T0547.t2k.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)D564 (1nlnA)Q85 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1nlnA 79 :RLKQVY T0547 565 :YD 1nlnA 86 :FE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52046 # 1ywfA.558.274 read from T0547.t2k.many.frag # found chain 1ywfA in template set Warning: unaligning (T0547)D564 (1ywfA)G261 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1ywfA)S263 because P (beta_P) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1ywfA 255 :GYLRDA T0547 565 :Y 1ywfA 262 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=52048 # 1l3lA.558.192 read from T0547.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D564 (1l3lA)G199 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1l3lA)V200 because Y (epsilon') conformation "forbidden" or filtered. T0547 558 :DTLEDL 1l3lA 193 :EIADVE T0547 566 :D 1l3lA 201 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=52050 # 1r9lA.558.252 read from T0547.t2k.many.frag # found chain 1r9lA in training set Warning: unaligning (T0547)D566 (1r9lA)P261 because P (beta_P) conformation "forbidden" or filtered. T0547 558 :DTLEDLDY 1r9lA 253 :KLFAIMQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=52051 # 1h0hB.558.114 read from T0547.t2k.many.frag # found chain 1h0hB in training set T0547 558 :DTLEDLDYD 1h0hB 115 :SVISACPYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52052 # 1w0hA.558.66 read from T0547.t2k.many.frag # found chain 1w0hA in training set Warning: unaligning (T0547)D564 (1w0hA)G191 because T (delta_L) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1w0hA 185 :FCISLT T0547 565 :YD 1w0hA 192 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=52054 # 2bnxA.558.220 read from T0547.t2k.many.frag # found chain 2bnxA in template set T0547 558 :DTLEDLDYD 2bnxA 351 :VQLCVFDEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52055 # 1k3rA.558.175 read from T0547.t2k.many.frag # found chain 1k3rA in template set Warning: unaligning (T0547)D564 (1k3rA)G182 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1k3rA 176 :ESLKTV T0547 565 :YD 1k3rA 183 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=52057 # 1x6iA.558.44 read from T0547.t2k.many.frag # found chain 1x6iA in training set T0547 558 :DTLEDLDYD 1x6iA 42 :IFIRLLECD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52058 # 1ew0A.558.43 read from T0547.t2k.many.frag # found chain 1ew0A in training set T0547 558 :DTLEDLDYD 1ew0A 165 :AAVRQFGYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52059 # 2b8nA.558.381 read from T0547.t2k.many.frag # found chain 2b8nA in template set T0547 558 :DTLEDLDYD 2b8nA 370 :KTLKAMGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=52060 # 1ku3A.558.34 read from T0547.t2k.many.frag # found chain 1ku3A in training set Warning: unaligning (T0547)D564 (1ku3A)G406 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1ku3A)T408 because P (beta_P) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1ku3A 400 :EVGAYF T0547 565 :Y 1ku3A 407 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=52062 # 1tr8A.558.70 read from T0547.t2k.many.frag # found chain 1tr8A in template set Warning: unaligning (T0547)D564 (1tr8A)G92 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1tr8A 86 :LVMNQT T0547 565 :YD 1tr8A 93 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=52064 # 1mdc.558.17 read from T0547.t2k.many.frag # found chain 1mdc in training set T0547 558 :DTLEDLDYD 1mdc 17 :GFLKSAGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52065 # 1pyaB.558.126 read from T0547.t2k.many.frag # found chain 1pyaB in template set T0547 558 :DTLEDLDYD 1pyaB 209 :ELLEYLEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52066 # 1j54A.558.60 read from T0547.t2k.many.frag # found chain 1j54A in template set Warning: unaligning (T0547)D564 (1j54A)G67 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1j54A 61 :EAFGVH T0547 565 :YD 1j54A 68 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=52068 # 1or7A.559.161 read from T0547.t2k.many.frag # found chain 1or7A in template set T0547 559 :TLEDLDYDI 1or7A 159 :IAAIMDCPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52069 # 1fipA.559.76 read from T0547.t2k.many.frag # found chain 1fipA in template set Warning: unaligning (T0547)D564 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 559 :TLEDL 1fipA 77 :AALMM T0547 565 :YDI 1fipA 83 :INR Number of specific fragments extracted= 2 number of extra gaps= 1 total=52071 # 2ao9A.559.53 read from T0547.t2k.many.frag # found chain 2ao9A in template set Warning: unaligning (T0547)D566 (2ao9A)N61 because P (beta_P) conformation "forbidden" or filtered. T0547 559 :TLEDLDY 2ao9A 54 :MANELGI T0547 567 :I 2ao9A 62 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=52073 # 1fs7A.559.428 read from T0547.t2k.many.frag # found chain 1fs7A in training set Warning: unaligning (T0547)D564 (1fs7A)K456 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1fs7A 451 :AQKLA T0547 565 :YDI 1fs7A 457 :VDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=52075 # 1r9lA.559.253 read from T0547.t2k.many.frag # found chain 1r9lA in training set Warning: unaligning (T0547)D564 (1r9lA)Q259 because E (beta_S) conformation "forbidden" or filtered. T0547 559 :TLEDL 1r9lA 254 :LFAIM T0547 565 :YDI 1r9lA 260 :LPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=52077 # 1u8bA.559.98 read from T0547.t2k.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 559 :TLEDL 1u8bA 105 :LADQV T0547 567 :I 1u8bA 113 :P Number of specific fragments extracted= 2 number of extra gaps= 0 total=52079 # 1xsvA.559.46 read from T0547.t2k.many.frag # found chain 1xsvA in training set Warning: unaligning (T0547)D564 (1xsvA)N49 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1xsvA 44 :IADTF T0547 565 :YDI 1xsvA 50 :VSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=52081 # 1l3lA.559.193 read from T0547.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D564 (1l3lA)G199 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1l3lA)K201 because P (beta_P) conformation "forbidden" or filtered. T0547 559 :TLEDL 1l3lA 194 :IADVE T0547 565 :Y 1l3lA 200 :V T0547 567 :I 1l3lA 202 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=52084 # 2b5aA.559.57 read from T0547.t2k.many.frag # found chain 2b5aA in training set T0547 559 :TLEDLDYDI 2b5aA 58 :ICAALDIPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52085 # 1ew0A.559.44 read from T0547.t2k.many.frag # found chain 1ew0A in training set Warning: unaligning (T0547)D564 (1ew0A)G171 because T (delta_L) conformation "forbidden" or filtered. T0547 559 :TLEDL 1ew0A 166 :AVRQF T0547 565 :YDI 1ew0A 172 :YAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52087 # 1r9jA.559.635 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 559 :TLEDLDYDI 1r9jA 634 :LYKKFGITV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52088 # 1u3eM.559.140 read from T0547.t2k.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1u3eM 141 :ACEEL T0547 565 :YDI 1u3eM 147 :LTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=52090 # 1aisB.559.170 read from T0547.t2k.many.frag # found chain 1aisB in template set Warning: unaligning (T0547)D564 (1aisB)R1276 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1aisB 1271 :VAEVA T0547 565 :YDI 1aisB 1277 :VTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52092 # 1x6iA.559.45 read from T0547.t2k.many.frag # found chain 1x6iA in training set T0547 559 :TLEDLDYDI 1x6iA 43 :FIRLLECDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52093 # 1i3jA.559.88 read from T0547.t2k.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)D564 (1i3jA)K223 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1i3jA)S225 because P (beta_P) conformation "forbidden" or filtered. T0547 559 :TLEDL 1i3jA 218 :AARHF T0547 565 :Y 1i3jA 224 :I T0547 567 :I 1i3jA 226 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=52096 # 1ku3A.559.35 read from T0547.t2k.many.frag # found chain 1ku3A in training set Warning: unaligning (T0547)D564 (1ku3A)G406 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1ku3A 401 :VGAYF T0547 565 :YDI 1ku3A 407 :VTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=52098 # 1nlnA.559.79 read from T0547.t2k.many.frag # found chain 1nlnA in training set T0547 559 :TLEDLDYDI 1nlnA 80 :LKQVYQFEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52099 # 1whzA.559.55 read from T0547.t2k.many.frag # found chain 1whzA in training set Warning: unaligning (T0547)D564 (1whzA)G61 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1whzA 56 :ILRDA T0547 565 :YDI 1whzA 62 :LTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52101 # 1epuA.559.423 read from T0547.t2k.many.frag # found chain 1epuA in template set T0547 559 :TLEDLDYDI 1epuA 424 :LVQHAHIPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52102 # 1w0hA.559.67 read from T0547.t2k.many.frag # found chain 1w0hA in training set T0547 559 :TLEDLDYDI 1w0hA 186 :CISLTGITQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52103 # 1zboA.559.176 read from T0547.t2k.many.frag # found chain 1zboA in template set T0547 559 :TLEDLDYDI 1zboA 177 :KARLLLLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=52104 # 1us5A.559.263 read from T0547.t2k.many.frag # found chain 1us5A in training set T0547 559 :TLEDLDYDI 1us5A 264 :FMKAVFGNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52105 1j75A expands to /projects/compbio/data/pdb/1j75.pdb.gz 1j75A:# 1j75A.559.30 read from T0547.t2k.many.frag # adding 1j75A to template set # found chain 1j75A in template set T0547 559 :TLEDLDYDI 1j75A 134 :LVKKCQVPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52106 # 2b8nA.559.382 read from T0547.t2k.many.frag # found chain 2b8nA in template set T0547 559 :TLEDLDYDI 2b8nA 371 :TLKAMGEDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=52107 # 1zkeA.559.23 read from T0547.t2k.many.frag # found chain 1zkeA in training set Warning: unaligning (T0547)D564 (1zkeA)N27 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1zkeA 22 :LLKLA T0547 565 :YDI 1zkeA 28 :LSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=52109 # 1oaiA.559.27 read from T0547.t2k.many.frag # found chain 1oaiA in training set T0547 559 :TLEDLDYDI 1oaiA 588 :CLQDNNWDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52110 # 1mdc.559.18 read from T0547.t2k.many.frag # found chain 1mdc in training set Warning: unaligning (T0547)D564 (1mdc)G23 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1mdc 18 :FLKSA T0547 565 :YDI 1mdc 24 :LSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=52112 # 1tr8A.559.71 read from T0547.t2k.many.frag # found chain 1tr8A in template set Warning: unaligning (T0547)D564 (1tr8A)G92 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1tr8A 87 :VMNQT T0547 565 :YDI 1tr8A 93 :ASR Number of specific fragments extracted= 2 number of extra gaps= 1 total=52114 # 1wpnA.559.168 read from T0547.t2k.many.frag # found chain 1wpnA in training set T0547 559 :TLEDLDYDI 1wpnA 169 :LAEIAGVDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52115 # 1j54A.559.61 read from T0547.t2k.many.frag # found chain 1j54A in template set Warning: unaligning (T0547)D564 (1j54A)G67 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1j54A 62 :AFGVH T0547 565 :YDI 1j54A 68 :IAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=52117 # 1or7A.560.162 read from T0547.t2k.many.frag # found chain 1or7A in template set T0547 560 :LEDLDYDIH 1or7A 160 :AAIMDCPVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52118 # 1fipA.560.77 read from T0547.t2k.many.frag # found chain 1fipA in template set Warning: unaligning (T0547)D564 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 560 :LEDL 1fipA 78 :ALMM T0547 565 :YDIH 1fipA 83 :INRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=52120 # 1ew0A.560.45 read from T0547.t2k.many.frag # found chain 1ew0A in training set Warning: unaligning (T0547)D564 (1ew0A)G171 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1ew0A)A173 because P (beta_P) conformation "forbidden" or filtered. T0547 560 :LEDL 1ew0A 167 :VRQF T0547 565 :Y 1ew0A 172 :Y T0547 567 :IH 1ew0A 174 :EE Number of specific fragments extracted= 3 number of extra gaps= 2 total=52123 # 1u8bA.560.99 read from T0547.t2k.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 560 :LEDL 1u8bA 106 :ADQV T0547 567 :IH 1u8bA 113 :PF Number of specific fragments extracted= 2 number of extra gaps= 0 total=52125 # 2b5aA.560.58 read from T0547.t2k.many.frag # found chain 2b5aA in training set T0547 560 :LEDLDYDIH 2b5aA 59 :CAALDIPAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52126 # 1fs7A.560.429 read from T0547.t2k.many.frag # found chain 1fs7A in training set T0547 560 :LEDLDYDIH 1fs7A 452 :QKLAKVDME Number of specific fragments extracted= 1 number of extra gaps= 0 total=52127 # 1r9lA.560.254 read from T0547.t2k.many.frag # found chain 1r9lA in training set T0547 560 :LEDLDYDIH 1r9lA 255 :FAIMQLPVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52128 # 2ao9A.560.54 read from T0547.t2k.many.frag # found chain 2ao9A in template set Warning: unaligning (T0547)D564 (2ao9A)G59 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 2ao9A 55 :ANEL T0547 565 :YDIH 2ao9A 60 :INRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=52130 # 1x6iA.560.46 read from T0547.t2k.many.frag # found chain 1x6iA in training set T0547 560 :LEDLDYDIH 1x6iA 44 :IRLLECDDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=52131 # 1xsvA.560.47 read from T0547.t2k.many.frag # found chain 1xsvA in training set Warning: unaligning (T0547)D564 (1xsvA)N49 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1xsvA 45 :ADTF T0547 565 :YDIH 1xsvA 50 :VSRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=52133 # 1l3lA.560.194 read from T0547.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D566 (1l3lA)K201 because P (beta_P) conformation "forbidden" or filtered. T0547 560 :LEDLDY 1l3lA 195 :ADVEGV T0547 567 :IH 1l3lA 202 :YN Number of specific fragments extracted= 2 number of extra gaps= 1 total=52135 # 1whzA.560.56 read from T0547.t2k.many.frag # found chain 1whzA in training set Warning: unaligning (T0547)D564 (1whzA)G61 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1whzA 57 :LRDA T0547 565 :YDIH 1whzA 62 :LTEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52137 # 1zboA.560.177 read from T0547.t2k.many.frag # found chain 1zboA in template set T0547 560 :LEDLDYDIH 1zboA 178 :ARLLLLPPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52138 # 1i3jA.560.89 read from T0547.t2k.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)Y565 (1i3jA)I224 because Y (epsilon') conformation "forbidden" or filtered. T0547 560 :LEDLD 1i3jA 219 :ARHFK T0547 566 :DIH 1i3jA 225 :SSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=52140 # 1u3eM.560.141 read from T0547.t2k.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1u3eM 142 :CEEL T0547 565 :YDIH 1u3eM 147 :LTRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=52142 # 1aisB.560.171 read from T0547.t2k.many.frag # found chain 1aisB in template set Warning: unaligning (T0547)D564 (1aisB)R1276 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1aisB 1272 :AEVA T0547 565 :YDIH 1aisB 1277 :VTEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=52144 # 1us5A.560.264 read from T0547.t2k.many.frag # found chain 1us5A in training set T0547 560 :LEDLDYDIH 1us5A 265 :MKAVFGNLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52145 # 1j75A.560.31 read from T0547.t2k.many.frag # found chain 1j75A in template set Warning: unaligning (T0547)D564 (1j75A)Q139 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1j75A 135 :VKKC T0547 565 :YDIH 1j75A 140 :VPKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=52147 # 1epuA.560.424 read from T0547.t2k.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)D564 (1epuA)H429 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1epuA 425 :VQHA T0547 565 :YDIH 1epuA 430 :IPAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52149 # 1r9jA.560.636 read from T0547.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)D564 (1r9jA)G639 because T (delta_L) conformation "forbidden" or filtered. T0547 560 :LEDL 1r9jA 635 :YKKF T0547 565 :YDIH 1r9jA 640 :ITVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52151 # 1zkeA.560.24 read from T0547.t2k.many.frag # found chain 1zkeA in training set T0547 560 :LEDLDYDIH 1zkeA 23 :LKLANLSLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52152 # 1ku3A.560.36 read from T0547.t2k.many.frag # found chain 1ku3A in training set Warning: unaligning (T0547)D564 (1ku3A)G406 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1ku3A 402 :GAYF T0547 565 :YDIH 1ku3A 407 :VTRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52154 # 1oaiA.560.28 read from T0547.t2k.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1oaiA 589 :LQDN T0547 565 :YDIH 1oaiA 594 :WDYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=52156 # 1wpnA.560.169 read from T0547.t2k.many.frag # found chain 1wpnA in training set Warning: unaligning (T0547)D564 (1wpnA)G174 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1wpnA 170 :AEIA T0547 565 :YDIH 1wpnA 175 :VDAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52158 # 2b8nA.560.383 read from T0547.t2k.many.frag # found chain 2b8nA in template set T0547 560 :LEDLDYDIH 2b8nA 372 :LKAMGEDPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52159 1ail expands to /projects/compbio/data/pdb/1ail.pdb.gz 1ail:Warning: there is no chain 1ail will retry with 1ailA # 1ail.560.46 read from T0547.t2k.many.frag # adding 1ail to template set # found chain 1ail in template set Warning: unaligning (T0547)D564 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1ail 47 :GSTL T0547 565 :YDIH 1ail 52 :LNIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52161 # 1mdc.560.19 read from T0547.t2k.many.frag # found chain 1mdc in training set Warning: unaligning (T0547)D564 (1mdc)G23 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1mdc 19 :LKSA T0547 565 :YDIH 1mdc 24 :LSDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=52163 # 1k6kA.560.123 read from T0547.t2k.many.frag # found chain 1k6kA in training set T0547 560 :LEDLDYDIH 1k6kA 124 :LRKHEVSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52164 # 1nlnA.560.80 read from T0547.t2k.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)D564 (1nlnA)Q85 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1nlnA 81 :KQVY T0547 565 :YDIH 1nlnA 86 :FEYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52166 # 2bnxA.560.222 read from T0547.t2k.many.frag # found chain 2bnxA in template set T0547 560 :LEDLDYDIH 2bnxA 353 :LCVFDEQGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52167 # 1u8bA.561.100 read from T0547.t2k.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 561 :EDL 1u8bA 107 :DQV T0547 567 :IHA 1u8bA 113 :PFH Number of specific fragments extracted= 2 number of extra gaps= 0 total=52169 # 1fipA.561.78 read from T0547.t2k.many.frag # found chain 1fipA in template set Warning: unaligning (T0547)D564 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1fipA)N84 because P (beta_P) conformation "forbidden" or filtered. T0547 561 :EDL 1fipA 79 :LMM T0547 565 :Y 1fipA 83 :I T0547 567 :IHA 1fipA 85 :RGT Number of specific fragments extracted= 3 number of extra gaps= 2 total=52172 # 2b5aA.561.59 read from T0547.t2k.many.frag # found chain 2b5aA in training set T0547 561 :EDLDYDIHA 2b5aA 60 :AALDIPAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=52173 # 1ew0A.561.46 read from T0547.t2k.many.frag # found chain 1ew0A in training set T0547 561 :EDLDYDIHA 1ew0A 168 :RQFGYAEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52174 # 1x6iA.561.47 read from T0547.t2k.many.frag # found chain 1x6iA in training set T0547 561 :EDLDYDIHA 1x6iA 45 :RLLECDDPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52175 # 1whzA.561.57 read from T0547.t2k.many.frag # found chain 1whzA in training set T0547 561 :EDLDYDIHA 1whzA 58 :RDAGLTEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52176 # 1u3eM.561.142 read from T0547.t2k.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1u3eM 143 :EEL T0547 565 :YDIHA 1u3eM 147 :LTRGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=52178 # 1r9lA.561.255 read from T0547.t2k.many.frag # found chain 1r9lA in training set T0547 561 :EDLDYDIHA 1r9lA 256 :AIMQLPVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52179 # 1zboA.561.178 read from T0547.t2k.many.frag # found chain 1zboA in template set T0547 561 :EDLDYDIHA 1zboA 179 :RLLLLPPLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52180 # 1xsvA.561.48 read from T0547.t2k.many.frag # found chain 1xsvA in training set Warning: unaligning (T0547)D564 (1xsvA)N49 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1xsvA 46 :DTF T0547 565 :YDIHA 1xsvA 50 :VSRQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=52182 # 1fs7A.561.430 read from T0547.t2k.many.frag # found chain 1fs7A in training set Warning: unaligning (T0547)D564 (1fs7A)K456 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1fs7A 453 :KLA T0547 565 :YDIHA 1fs7A 457 :VDMEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=52184 # 1l3lA.561.195 read from T0547.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D564 (1l3lA)G199 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1l3lA 196 :DVE T0547 565 :YDIHA 1l3lA 200 :VKYNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=52186 # 1or7A.561.163 read from T0547.t2k.many.frag # found chain 1or7A in template set Warning: unaligning (T0547)D564 (1or7A)D164 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1or7A)C165 because Y (epsilon') conformation "forbidden" or filtered. T0547 561 :EDL 1or7A 161 :AIM T0547 566 :DIHA 1or7A 166 :PVGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=52188 # 1ku3A.561.37 read from T0547.t2k.many.frag # found chain 1ku3A in training set Warning: unaligning (T0547)D564 (1ku3A)G406 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1ku3A 403 :AYF T0547 565 :YDIHA 1ku3A 407 :VTRER Number of specific fragments extracted= 2 number of extra gaps= 1 total=52190 # 1ail.561.47 read from T0547.t2k.many.frag # found chain 1ail in template set T0547 561 :EDLDYDIHA 1ail 48 :STLGLNIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52191 # 1k6kA.561.124 read from T0547.t2k.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)E128 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1k6kA 125 :RKH T0547 565 :YDIHA 1k6kA 129 :VSRLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=52193 # 1aisB.561.172 read from T0547.t2k.many.frag # found chain 1aisB in template set Warning: unaligning (T0547)D564 (1aisB)R1276 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1aisB 1273 :EVA T0547 565 :YDIHA 1aisB 1277 :VTEVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=52195 # 1oaiA.561.29 read from T0547.t2k.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1oaiA 590 :QDN T0547 566 :DIHA 1oaiA 595 :DYTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=52197 # 1r9jA.561.637 read from T0547.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)D566 (1r9jA)T641 because E (beta_S) conformation "forbidden" or filtered. T0547 561 :EDLDY 1r9jA 636 :KKFGI T0547 567 :IHA 1r9jA 642 :VEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52199 # 2ao9A.561.55 read from T0547.t2k.many.frag # found chain 2ao9A in template set Warning: unaligning (T0547)D564 (2ao9A)G59 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 2ao9A 56 :NEL T0547 565 :YDIHA 2ao9A 60 :INRTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=52201 # 1j75A.561.32 read from T0547.t2k.many.frag # found chain 1j75A in template set Warning: unaligning (T0547)D564 (1j75A)Q139 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1j75A 136 :KKC T0547 565 :YDIHA 1j75A 140 :VPKKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=52203 # 2auwA.561.99 read from T0547.t2k.many.frag # found chain 2auwA in template set Warning: unaligning (T0547)D564 (2auwA)N101 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 2auwA 98 :HRN T0547 565 :YDIHA 2auwA 102 :LSLTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=52205 # 1zkeA.561.25 read from T0547.t2k.many.frag # found chain 1zkeA in training set T0547 561 :EDLDYDIHA 1zkeA 24 :KLANLSLGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52206 # 1yvvA.561.239 read from T0547.t2k.many.frag # found chain 1yvvA in template set T0547 561 :EDLDYDIHA 1yvvA 240 :QNLDASREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52207 # 1i3jA.561.90 read from T0547.t2k.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)D564 (1i3jA)K223 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1i3jA 220 :RHF T0547 565 :YDIHA 1i3jA 224 :ISSGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=52209 # 1zs4A.561.31 read from T0547.t2k.many.frag # found chain 1zs4A in training set Warning: unaligning (T0547)D564 (1zs4A)G34 because T (delta_L) conformation "forbidden" or filtered. T0547 561 :EDL 1zs4A 31 :EAV T0547 565 :YDIHA 1zs4A 35 :VDKSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=52211 # 1epuA.561.425 read from T0547.t2k.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)D564 (1epuA)H429 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1epuA 426 :QHA T0547 565 :YDIHA 1epuA 430 :IPAEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52213 # 1fc3A.561.55 read from T0547.t2k.many.frag # found chain 1fc3A in template set Warning: unaligning (T0547)D566 (1fc3A)T200 because E (beta_S) conformation "forbidden" or filtered. T0547 561 :EDLDY 1fc3A 195 :KKYNT T0547 567 :IHA 1fc3A 201 :ASR Number of specific fragments extracted= 2 number of extra gaps= 1 total=52215 # 1c3cA.561.330 read from T0547.t2k.many.frag # found chain 1c3cA in training set T0547 561 :EDLDYDIHA 1c3cA 332 :RNMKVNEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=52216 # 1tr8A.561.73 read from T0547.t2k.many.frag # found chain 1tr8A in template set Warning: unaligning (T0547)D564 (1tr8A)G92 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1tr8A 89 :NQT T0547 565 :YDIHA 1tr8A 93 :ASRED Number of specific fragments extracted= 2 number of extra gaps= 1 total=52218 # 1u8bA.562.101 read from T0547.t2k.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 562 :DL 1u8bA 108 :QV T0547 567 :IHAI 1u8bA 113 :PFHL Number of specific fragments extracted= 2 number of extra gaps= 0 total=52220 # 1r9lA.562.256 read from T0547.t2k.many.frag # found chain 1r9lA in training set T0547 562 :DLDYDIHAI 1r9lA 257 :IMQLPVADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52221 # 1ail.562.48 read from T0547.t2k.many.frag # found chain 1ail in template set Warning: unaligning (T0547)D564 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1ail 49 :TL T0547 565 :YDIHAI 1ail 52 :LNIEAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=52223 # 1ku3A.562.38 read from T0547.t2k.many.frag # found chain 1ku3A in training set Warning: unaligning (T0547)D564 (1ku3A)G406 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1ku3A 404 :YF T0547 565 :YDIHAI 1ku3A 407 :VTRERI Number of specific fragments extracted= 2 number of extra gaps= 1 total=52225 # 2b5aA.562.60 read from T0547.t2k.many.frag # found chain 2b5aA in training set T0547 562 :DLDYDIHAI 2b5aA 61 :ALDIPASTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52226 # 1ew0A.562.47 read from T0547.t2k.many.frag # found chain 1ew0A in training set Warning: unaligning (T0547)D564 (1ew0A)G171 because T (delta_L) conformation "forbidden" or filtered. T0547 562 :DL 1ew0A 169 :QF T0547 565 :YDIHAI 1ew0A 172 :YAEEEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=52228 # 1zboA.562.179 read from T0547.t2k.many.frag # found chain 1zboA in template set T0547 562 :DLDYDIHAI 1zboA 180 :LLLLPPLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52229 # 1yvvA.562.240 read from T0547.t2k.many.frag # found chain 1yvvA in template set T0547 562 :DLDYDIHAI 1yvvA 241 :NLDASREQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52230 # 1l3lA.562.196 read from T0547.t2k.many.frag # found chain 1l3lA in training set T0547 562 :DLDYDIHAI 1l3lA 197 :VEGVKYNSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52231 # 1fs7A.562.431 read from T0547.t2k.many.frag # found chain 1fs7A in training set Warning: unaligning (T0547)D564 (1fs7A)K456 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1fs7A 454 :LA T0547 565 :YDIHAI 1fs7A 457 :VDMEAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=52233 # 1k6kA.562.125 read from T0547.t2k.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)E128 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1k6kA 126 :KH T0547 565 :YDIHAI 1k6kA 129 :VSRLDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=52235 # 1u3eM.562.143 read from T0547.t2k.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1u3eM 144 :EL T0547 565 :YDIHAI 1u3eM 147 :LTRGKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=52237 # 1j75A.562.33 read from T0547.t2k.many.frag # found chain 1j75A in template set Warning: unaligning (T0547)D564 (1j75A)Q139 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1j75A)P141 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DL 1j75A 137 :KC T0547 565 :Y 1j75A 140 :V T0547 567 :IHAI 1j75A 142 :KKTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=52240 # 1xsvA.562.49 read from T0547.t2k.many.frag # found chain 1xsvA in training set Warning: unaligning (T0547)D564 (1xsvA)N49 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1xsvA 47 :TF T0547 565 :YDIHAI 1xsvA 50 :VSRQAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=52242 # 1oaiA.562.30 read from T0547.t2k.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1oaiA 591 :DN T0547 565 :YDIHAI 1oaiA 594 :WDYTRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=52244 # 1aisB.562.173 read from T0547.t2k.many.frag # found chain 1aisB in template set Warning: unaligning (T0547)D564 (1aisB)R1276 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1aisB)T1278 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DL 1aisB 1274 :VA T0547 565 :Y 1aisB 1277 :V T0547 567 :IHAI 1aisB 1279 :EVTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=52247 # 2auwA.562.100 read from T0547.t2k.many.frag # found chain 2auwA in template set Warning: unaligning (T0547)D564 (2auwA)N101 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 2auwA 99 :RN T0547 565 :YDIHAI 2auwA 102 :LSLTTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=52249 # 1whzA.562.58 read from T0547.t2k.many.frag # found chain 1whzA in training set Warning: unaligning (T0547)D564 (1whzA)G61 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1whzA 59 :DA T0547 565 :YDIHAI 1whzA 62 :LTEEEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=52251 # 1r9jA.562.638 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 562 :DLDYDIHAI 1r9jA 637 :KFGITVEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52252 # 1i3jA.562.91 read from T0547.t2k.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)D564 (1i3jA)K223 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1i3jA)S225 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DL 1i3jA 221 :HF T0547 565 :Y 1i3jA 224 :I T0547 567 :IHAI 1i3jA 226 :SGLV Number of specific fragments extracted= 3 number of extra gaps= 2 total=52255 # 1x6iA.562.48 read from T0547.t2k.many.frag # found chain 1x6iA in training set T0547 562 :DLDYDIHAI 1x6iA 46 :LLECDDPDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52256 # 1fipA.562.79 read from T0547.t2k.many.frag # found chain 1fipA in template set T0547 562 :DLDYDIHAI 1fipA 80 :MMGINRGTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52257 # 1fc3A.562.56 read from T0547.t2k.many.frag # found chain 1fc3A in template set Warning: unaligning (T0547)D564 (1fc3A)N198 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1fc3A 196 :KY T0547 565 :YDIHAI 1fc3A 199 :TTASRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=52259 # 1or7A.562.164 read from T0547.t2k.many.frag # found chain 1or7A in template set Warning: unaligning (T0547)D564 (1or7A)D164 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1or7A 162 :IM T0547 565 :YDIHAI 1or7A 165 :CPVGTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=52261 # 1ts9A.562.77 read from T0547.t2k.many.frag # found chain 1ts9A in training set Warning: unaligning (T0547)D566 (1ts9A)R82 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DLDY 1ts9A 78 :LINF T0547 567 :IHAI 1ts9A 83 :PEDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=52263 # 1zs4A.562.32 read from T0547.t2k.many.frag # found chain 1zs4A in training set Warning: unaligning (T0547)D564 (1zs4A)G34 because T (delta_L) conformation "forbidden" or filtered. T0547 562 :DL 1zs4A 32 :AV T0547 565 :YDIHAI 1zs4A 35 :VDKSQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=52265 1dqaA expands to /projects/compbio/data/pdb/1dqa.pdb.gz 1dqaA:# 1dqaA.562.298 read from T0547.t2k.many.frag # adding 1dqaA to template set # found chain 1dqaA in template set Warning: unaligning (T0547)D564 (1dqaA)K722 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1dqaA)T723 because Y (epsilon') conformation "forbidden" or filtered. T0547 562 :DL 1dqaA 720 :VL T0547 566 :DIHAI 1dqaA 724 :TTEAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=52267 # 1zkeA.562.26 read from T0547.t2k.many.frag # found chain 1zkeA in training set Warning: unaligning (T0547)D564 (1zkeA)N27 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1zkeA 25 :LA T0547 565 :YDIHAI 1zkeA 28 :LSLGDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=52269 # 2bmaA.562.410 read from T0547.t2k.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)D562 (2bmaA)F390 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L563 (2bmaA)S391 because Y (epsilon') conformation "forbidden" or filtered. T0547 564 :DYDIHAI 2bmaA 392 :HWTRETV Number of specific fragments extracted= 1 number of extra gaps= 1 total=52270 # 1v4vA.562.315 read from T0547.t2k.many.frag # found chain 1v4vA in training set T0547 562 :DLDYDIHAI 1v4vA 316 :LAGTDPEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52271 # 1yvvA.563.241 read from T0547.t2k.many.frag # found chain 1yvvA in template set T0547 563 :LDYDIHAIM 1yvvA 242 :LDASREQVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52272 # 1u8bA.563.102 read from T0547.t2k.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 563 :L 1u8bA 109 :V T0547 567 :IHAIM 1u8bA 113 :PFHLH Number of specific fragments extracted= 2 number of extra gaps= 0 total=52274 # 1ail.563.49 read from T0547.t2k.many.frag # found chain 1ail in template set Warning: unaligning (T0547)D564 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0547 563 :L 1ail 50 :L T0547 565 :YDIHAIM 1ail 52 :LNIEAAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=52276 # 1v4vA.563.316 read from T0547.t2k.many.frag # found chain 1v4vA in training set T0547 563 :LDYDIHAIM 1v4vA 317 :AGTDPEGVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52277 # 2bmaA.563.411 read from T0547.t2k.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)L563 (2bmaA)S391 because Y (epsilon') conformation "forbidden" or filtered. T0547 564 :DYDIHAIM 2bmaA 392 :HWTRETVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=52278 # 2b5aA.563.61 read from T0547.t2k.many.frag # found chain 2b5aA in training set T0547 563 :LDYDIHAIM 2b5aA 62 :LDIPASTFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52279 # 1ku3A.563.39 read from T0547.t2k.many.frag # found chain 1ku3A in training set T0547 563 :LDYDIHAIM 1ku3A 405 :FGVTRERIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52280 # 1r9jA.563.639 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 563 :LDYDIHAIM 1r9jA 638 :FGITVEEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52281 # 1r9lA.563.257 read from T0547.t2k.many.frag # found chain 1r9lA in training set T0547 563 :LDYDIHAIM 1r9lA 258 :MQLPVADIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52282 # 1oaiA.563.31 read from T0547.t2k.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1oaiA)D595 because D (zeta) conformation "forbidden" or filtered. T0547 563 :L 1oaiA 592 :N T0547 565 :Y 1oaiA 594 :W T0547 567 :IHAIM 1oaiA 596 :YTRSA Number of specific fragments extracted= 3 number of extra gaps= 2 total=52285 # 1k6kA.563.126 read from T0547.t2k.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)E128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1k6kA)S130 because P (beta_P) conformation "forbidden" or filtered. T0547 563 :L 1k6kA 127 :H T0547 565 :Y 1k6kA 129 :V T0547 567 :IHAIM 1k6kA 131 :RLDVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=52288 # 1dqaA.563.299 read from T0547.t2k.many.frag # found chain 1dqaA in template set T0547 563 :LDYDIHAIM 1dqaA 721 :LKTTTEAMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52289 # 1j75A.563.34 read from T0547.t2k.many.frag # found chain 1j75A in template set T0547 563 :LDYDIHAIM 1j75A 138 :CQVPKKTLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52290 # 1fs7A.563.432 read from T0547.t2k.many.frag # found chain 1fs7A in training set Warning: unaligning (T0547)D564 (1fs7A)K456 because L (left) conformation "forbidden" or filtered. T0547 563 :L 1fs7A 455 :A T0547 565 :YDIHAIM 1fs7A 457 :VDMEAFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=52292 1ytaA expands to /projects/compbio/data/pdb/1yta.pdb.gz 1ytaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ytaA.563.76 read from T0547.t2k.many.frag # adding 1ytaA to template set # found chain 1ytaA in template set T0547 563 :LDYDIHAIM 1ytaA 77 :STMGDREAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52293 # 2auwA.563.101 read from T0547.t2k.many.frag # found chain 2auwA in template set T0547 563 :LDYDIHAIM 2auwA 100 :NNLSLTTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52294 # 1zboA.563.180 read from T0547.t2k.many.frag # found chain 1zboA in template set T0547 563 :LDYDIHAIM 1zboA 181 :LLLPPLDRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52295 # 1u3eM.563.144 read from T0547.t2k.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. T0547 563 :L 1u3eM 145 :L T0547 565 :YDIHAIM 1u3eM 147 :LTRGKVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=52297 # 1l3lA.563.197 read from T0547.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D564 (1l3lA)G199 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1l3lA)K201 because P (beta_P) conformation "forbidden" or filtered. T0547 563 :L 1l3lA 198 :E T0547 565 :Y 1l3lA 200 :V T0547 567 :IHAIM 1l3lA 202 :YNSVR Number of specific fragments extracted= 3 number of extra gaps= 2 total=52300 # 1fc3A.563.57 read from T0547.t2k.many.frag # found chain 1fc3A in template set T0547 563 :LDYDIHAIM 1fc3A 197 :YNTTASRVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52301 # 1aisB.563.174 read from T0547.t2k.many.frag # found chain 1aisB in template set Warning: unaligning (T0547)D564 (1aisB)R1276 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1aisB)T1278 because P (beta_P) conformation "forbidden" or filtered. T0547 563 :L 1aisB 1275 :A T0547 565 :Y 1aisB 1277 :V T0547 567 :IHAIM 1aisB 1279 :EVTVR Number of specific fragments extracted= 3 number of extra gaps= 2 total=52304 # 1z53A.563.250 read from T0547.t2k.many.frag # found chain 1z53A in template set T0547 563 :LDYDIHAIM 1z53A 251 :YANDQDKFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52305 # 1e7uA.563.915 read from T0547.t2k.many.frag # found chain 1e7uA in template set T0547 563 :LDYDIHAIM 1e7uA 1057 :VGKSEEDAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52306 # 1ts9A.563.78 read from T0547.t2k.many.frag # found chain 1ts9A in training set Warning: unaligning (T0547)Y565 (1ts9A)F81 because Y (epsilon') conformation "forbidden" or filtered. T0547 563 :LD 1ts9A 79 :IN T0547 566 :DIHAIM 1ts9A 82 :RPEDRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=52308 # 1xsvA.563.50 read from T0547.t2k.many.frag # found chain 1xsvA in training set Warning: unaligning (T0547)D564 (1xsvA)N49 because L (left) conformation "forbidden" or filtered. T0547 563 :L 1xsvA 48 :F T0547 565 :YDIHAIM 1xsvA 50 :VSRQAVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=52310 # 1fipA.563.80 read from T0547.t2k.many.frag # found chain 1fipA in template set Warning: unaligning (T0547)D564 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1fipA)N84 because P (beta_P) conformation "forbidden" or filtered. T0547 563 :L 1fipA 81 :M T0547 565 :Y 1fipA 83 :I T0547 567 :IHAIM 1fipA 85 :RGTLR Number of specific fragments extracted= 3 number of extra gaps= 2 total=52313 # 1tr8A.563.75 read from T0547.t2k.many.frag # found chain 1tr8A in template set Warning: unaligning (T0547)D564 (1tr8A)G92 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1tr8A)S94 because P (beta_P) conformation "forbidden" or filtered. T0547 563 :L 1tr8A 91 :T T0547 565 :Y 1tr8A 93 :A T0547 567 :IHAIM 1tr8A 95 :REDAT Number of specific fragments extracted= 3 number of extra gaps= 2 total=52316 # 1x6iA.563.49 read from T0547.t2k.many.frag # found chain 1x6iA in training set T0547 563 :LDYDIHAIM 1x6iA 47 :LECDDPDLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52317 # 2c1vA.563.128 read from T0547.t2k.many.frag # found chain 2c1vA in training set Warning: unaligning (T0547)D564 (2c1vA)S130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (2c1vA)N131 because Y (epsilon') conformation "forbidden" or filtered. T0547 563 :L 2c1vA 129 :M T0547 566 :DIHAIM 2c1vA 132 :TPDQVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=52319 # 1txlA.563.200 read from T0547.t2k.many.frag # found chain 1txlA in training set T0547 563 :LDYDIHAIM 1txlA 201 :YQLSSEEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52320 # 1v4vA.564.317 read from T0547.t2k.many.frag # found chain 1v4vA in training set T0547 564 :DYDIHAIMD 1v4vA 318 :GTDPEGVYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52321 # 1ail.564.50 read from T0547.t2k.many.frag # found chain 1ail in template set Warning: unaligning (T0547)D564 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1ail 52 :LNIEAATH Number of specific fragments extracted= 1 number of extra gaps= 1 total=52322 # 1yvvA.564.242 read from T0547.t2k.many.frag # found chain 1yvvA in template set Warning: unaligning (T0547)D566 (1yvvA)S245 because P (beta_P) conformation "forbidden" or filtered. T0547 564 :DY 1yvvA 243 :DA T0547 567 :IHAIMD 1yvvA 246 :REQVIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52324 # 1hx6A.564.316 read from T0547.t2k.many.frag # found chain 1hx6A in training set Warning: unaligning (T0547)D564 (1hx6A)K318 because P (beta_P) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1hx6A 319 :LDPKTWAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=52325 # 1r9jA.564.640 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 564 :DYDIHAIMD 1r9jA 639 :GITVEEVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52326 # 1dqaA.564.300 read from T0547.t2k.many.frag # found chain 1dqaA in template set Warning: unaligning (T0547)D566 (1dqaA)T724 because E (beta_S) conformation "forbidden" or filtered. T0547 564 :DY 1dqaA 722 :KT T0547 567 :IHAIMD 1dqaA 725 :TEAMIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52328 # 1ytaA.564.77 read from T0547.t2k.many.frag # found chain 1ytaA in template set T0547 564 :DYDIHAIMD 1ytaA 78 :TMGDREAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52329 # 2bmaA.564.412 read from T0547.t2k.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)D564 (2bmaA)H392 because D (zeta) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 2bmaA 393 :WTRETVDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=52330 # 1u8bA.564.103 read from T0547.t2k.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 567 :IHAIMD 1u8bA 113 :PFHLHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52331 # 1ku3A.564.40 read from T0547.t2k.many.frag # found chain 1ku3A in training set T0547 564 :DYDIHAIMD 1ku3A 406 :GVTRERIRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52332 # 1l3lA.564.198 read from T0547.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D564 (1l3lA)G199 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1l3lA)K201 because P (beta_P) conformation "forbidden" or filtered. T0547 565 :Y 1l3lA 200 :V T0547 567 :IHAIMD 1l3lA 202 :YNSVRV Number of specific fragments extracted= 2 number of extra gaps= 2 total=52334 # 1txlA.564.201 read from T0547.t2k.many.frag # found chain 1txlA in training set Warning: unaligning (T0547)D566 (1txlA)S204 because P (beta_P) conformation "forbidden" or filtered. T0547 564 :DY 1txlA 202 :QL T0547 567 :IHAIMD 1txlA 205 :SEEVVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52336 # 1j75A.564.35 read from T0547.t2k.many.frag # found chain 1j75A in template set T0547 564 :DYDIHAIMD 1j75A 139 :QVPKKTLNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52337 # 1pswA.564.328 read from T0547.t2k.many.frag # found chain 1pswA in template set T0547 564 :DYDIHAIMD 1pswA 329 :DITPQRVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52338 # 1oaiA.564.32 read from T0547.t2k.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1oaiA)D595 because D (zeta) conformation "forbidden" or filtered. T0547 567 :IHAIMD 1oaiA 596 :YTRSAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=52339 # 1fs7A.564.433 read from T0547.t2k.many.frag # found chain 1fs7A in training set Warning: unaligning (T0547)D564 (1fs7A)K456 because L (left) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1fs7A 457 :VDMEAFIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=52340 1r0vA expands to /projects/compbio/data/pdb/1r0v.pdb.gz 1r0vA:# 1r0vA.564.198 read from T0547.t2k.many.frag # adding 1r0vA to template set # found chain 1r0vA in template set Warning: unaligning (T0547)D566 (1r0vA)D201 because Y (epsilon') conformation "forbidden" or filtered. T0547 564 :DY 1r0vA 199 :NA T0547 567 :IHAIMD 1r0vA 202 :REELVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=52342 # 1e7uA.564.916 read from T0547.t2k.many.frag # found chain 1e7uA in template set Warning: unaligning (T0547)D564 (1e7uA)G1058 because T (delta_L) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1e7uA 1059 :KSEEDAKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=52343 # 1fc3A.564.58 read from T0547.t2k.many.frag # found chain 1fc3A in template set T0547 564 :DYDIHAIMD 1fc3A 198 :NTTASRVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=52344 # 2a84A.564.224 read from T0547.t2k.many.frag # found chain 2a84A in training set Warning: unaligning (T0547)D566 (2a84A)G227 because S (epsilon) conformation "forbidden" or filtered. T0547 564 :DY 2a84A 225 :TA T0547 567 :IHAIMD 2a84A 228 :AQAALD Number of specific fragments extracted= 2 number of extra gaps= 1 total=52346 # 2b5aA.564.62 read from T0547.t2k.many.frag # found chain 2b5aA in training set T0547 564 :DYDIHAIMD 2b5aA 63 :DIPASTFFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52347 # 1zboA.564.181 read from T0547.t2k.many.frag # found chain 1zboA in template set T0547 564 :DYDIHAIMD 1zboA 182 :LLPPLDRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52348 # 2auwA.564.102 read from T0547.t2k.many.frag # found chain 2auwA in template set Warning: unaligning (T0547)D564 (2auwA)N101 because L (left) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 2auwA 102 :LSLTTAAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=52349 # 1sz2A.564.222 read from T0547.t2k.many.frag # found chain 1sz2A in template set T0547 564 :DYDIHAIMD 1sz2A 212 :NLKPKDITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52350 # 1o7jA.564.313 read from T0547.t2k.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)D564 (1o7jA)T314 because Y (epsilon') conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1o7jA 315 :SDPKVIQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=52351 # 1k6kA.564.127 read from T0547.t2k.many.frag # found chain 1k6kA in training set T0547 564 :DYDIHAIMD 1k6kA 128 :EVSRLDVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52352 # 1z53A.564.251 read from T0547.t2k.many.frag # found chain 1z53A in template set T0547 564 :DYDIHAIMD 1z53A 252 :ANDQDKFFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52353 # 1xszA.564.328 read from T0547.t2k.many.frag # found chain 1xszA in training set T0547 564 :DYDIHAIMD 1xszA 327 :DYEVGDLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52354 # 1r9lA.564.258 read from T0547.t2k.many.frag # found chain 1r9lA in training set Warning: unaligning (T0547)D566 (1r9lA)P261 because P (beta_P) conformation "forbidden" or filtered. T0547 564 :DY 1r9lA 259 :QL T0547 567 :IHAIMD 1r9lA 262 :VADINA Number of specific fragments extracted= 2 number of extra gaps= 1 total=52356 # 1ts9A.564.79 read from T0547.t2k.many.frag # found chain 1ts9A in training set Warning: unaligning (T0547)D564 (1ts9A)N80 because N (gamma') conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1ts9A 81 :FRPEDRIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=52357 # 1r9jA.565.641 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 565 :YDIHAIMDI 1r9jA 640 :ITVEEVVRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52358 # 1ail.565.51 read from T0547.t2k.many.frag # found chain 1ail in template set T0547 565 :YDIHAIMDI 1ail 52 :LNIEAATHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52359 # 1pswA.565.329 read from T0547.t2k.many.frag # found chain 1pswA in template set T0547 565 :YDIHAIMDI 1pswA 330 :ITPQRVLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52360 # 1v4vA.565.318 read from T0547.t2k.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)Y565 (1v4vA)T319 because G (3-10) conformation "forbidden" or filtered. T0547 566 :DIHAIMDI 1v4vA 320 :DPEGVYRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=52361 # 2bmaA.565.413 read from T0547.t2k.many.frag # found chain 2bmaA in template set T0547 565 :YDIHAIMDI 2bmaA 393 :WTRETVDEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52362 # 1ytaA.565.78 read from T0547.t2k.many.frag # found chain 1ytaA in template set T0547 565 :YDIHAIMDI 1ytaA 79 :MGDREAELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52363 1knzA expands to /projects/compbio/data/pdb/1knz.pdb.gz 1knzA:# 1knzA.565.36 read from T0547.t2k.many.frag # adding 1knzA to template set # found chain 1knzA in template set T0547 565 :YDIHAIMDI 1knzA 37 :YDYQDIYSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52364 # 1dk0A.565.141 read from T0547.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)Y565 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. T0547 566 :DIHAIMDI 1dk0A 143 :DTGALETA Number of specific fragments extracted= 1 number of extra gaps= 1 total=52365 # 1e7uA.565.917 read from T0547.t2k.many.frag # found chain 1e7uA in template set T0547 565 :YDIHAIMDI 1e7uA 1059 :KSEEDAKKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52366 # 2a84A.565.225 read from T0547.t2k.many.frag # found chain 2a84A in training set Warning: unaligning (T0547)D566 (2a84A)G227 because S (epsilon) conformation "forbidden" or filtered. T0547 565 :Y 2a84A 226 :A T0547 567 :IHAIMDI 2a84A 228 :AQAALDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=52368 # 1hx6A.565.317 read from T0547.t2k.many.frag # found chain 1hx6A in training set T0547 565 :YDIHAIMDI 1hx6A 319 :LDPKTWAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52369 # 1wbeA.565.170 read from T0547.t2k.many.frag # found chain 1wbeA in training set T0547 565 :YDIHAIMDI 1wbeA 171 :VTEEECLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52370 # 1z53A.565.252 read from T0547.t2k.many.frag # found chain 1z53A in template set T0547 565 :YDIHAIMDI 1z53A 253 :NDQDKFFKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52371 # 1ks9A.565.221 read from T0547.t2k.many.frag # found chain 1ks9A in training set T0547 565 :YDIHAIMDI 1ks9A 222 :TSAEDLRDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52372 # 1kyqA.565.238 read from T0547.t2k.many.frag # found chain 1kyqA in template set T0547 565 :YDIHAIMDI 1kyqA 239 :IDVKRLLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52373 # 1yvvA.565.243 read from T0547.t2k.many.frag # found chain 1yvvA in template set T0547 565 :YDIHAIMDI 1yvvA 244 :ASREQVIEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=52374 # 1w2yA.565.212 read from T0547.t2k.many.frag # found chain 1w2yA in training set T0547 565 :YDIHAIMDI 1w2yA 213 :LDFDTIYKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52375 # 1yb3A.565.152 read from T0547.t2k.many.frag # found chain 1yb3A in training set T0547 565 :YDIHAIMDI 1yb3A 145 :FDKEEVKRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52376 # 1fc3A.565.59 read from T0547.t2k.many.frag # found chain 1fc3A in template set T0547 565 :YDIHAIMDI 1fc3A 199 :TTASRVERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52377 # 1ta8A.565.261 read from T0547.t2k.many.frag # found chain 1ta8A in training set Warning: unaligning (T0547)D566 (1ta8A)S263 because Y (epsilon') conformation "forbidden" or filtered. T0547 565 :Y 1ta8A 262 :Q T0547 567 :IHAIMDI 1ta8A 264 :IDEVWAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=52379 # 1ku3A.565.41 read from T0547.t2k.many.frag # found chain 1ku3A in training set T0547 565 :YDIHAIMDI 1ku3A 407 :VTRERIRQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52380 # 1xszA.565.329 read from T0547.t2k.many.frag # found chain 1xszA in training set T0547 565 :YDIHAIMDI 1xszA 328 :YEVGDLIKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52381 # 1zpvA.565.56 read from T0547.t2k.many.frag # found chain 1zpvA in template set T0547 565 :YDIHAIMDI 1zpvA 54 :QDFTYLRNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52382 # 1r0vA.565.199 read from T0547.t2k.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)Y565 (1r0vA)A200 because Y (epsilon') conformation "forbidden" or filtered. T0547 566 :DIHAIMDI 1r0vA 201 :DREELVKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=52383 # 1u8bA.565.104 read from T0547.t2k.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 567 :IHAIMDI 1u8bA 113 :PFHLHRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52384 # 2d2mC.565.81 read from T0547.t2k.many.frag # found chain 2d2mC in template set Warning: unaligning (T0547)Y565 (2d2mC)N82 because G (3-10) conformation "forbidden" or filtered. T0547 566 :DIHAIMDI 2d2mC 83 :DPAVLNEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=52385 # 1ka8A.565.53 read from T0547.t2k.many.frag # found chain 1ka8A in template set T0547 565 :YDIHAIMDI 1ka8A 54 :LSLKMFGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52386 # 1j75A.565.36 read from T0547.t2k.many.frag # found chain 1j75A in template set Warning: unaligning (T0547)D566 (1j75A)P141 because P (beta_P) conformation "forbidden" or filtered. T0547 565 :Y 1j75A 140 :V T0547 567 :IHAIMDI 1j75A 142 :KKTLNQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=52388 # 1pdo.565.107 read from T0547.t2k.many.frag # found chain 1pdo in training set T0547 565 :YDIHAIMDI 1pdo 109 :PSFDELVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52389 1n1bA expands to /projects/compbio/data/pdb/1n1b.pdb.gz 1n1bA:# 1n1bA.565.473 read from T0547.t2k.many.frag # adding 1n1bA to template set # found chain 1n1bA in template set Warning: unaligning (T0547)D566 (1n1bA)S524 because P (beta_P) conformation "forbidden" or filtered. T0547 565 :Y 1n1bA 523 :A T0547 567 :IHAIMDI 1n1bA 525 :EEEAVEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=52391 # 1r9jA.566.642 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 566 :DIHAIMDIL 1r9jA 641 :TVEEVVRTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52392 # 1ail.566.52 read from T0547.t2k.many.frag # found chain 1ail in template set T0547 566 :DIHAIMDIL 1ail 53 :NIEAATHVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52393 # 1pswA.566.330 read from T0547.t2k.many.frag # found chain 1pswA in template set T0547 566 :DIHAIMDIL 1pswA 331 :TPQRVLEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52394 # 1v4vA.566.319 read from T0547.t2k.many.frag # found chain 1v4vA in training set T0547 566 :DIHAIMDIL 1v4vA 320 :DPEGVYRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52395 # 2bmaA.566.414 read from T0547.t2k.many.frag # found chain 2bmaA in template set T0547 566 :DIHAIMDIL 2bmaA 394 :TRETVDEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52396 # 1ytaA.566.79 read from T0547.t2k.many.frag # found chain 1ytaA in template set T0547 566 :DIHAIMDIL 1ytaA 80 :GDREAELAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52397 # 1ks9A.566.222 read from T0547.t2k.many.frag # found chain 1ks9A in training set T0547 566 :DIHAIMDIL 1ks9A 223 :SAEDLRDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52398 # 1hx6A.566.318 read from T0547.t2k.many.frag # found chain 1hx6A in training set T0547 566 :DIHAIMDIL 1hx6A 320 :DPKTWAAQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52399 # 1w2yA.566.213 read from T0547.t2k.many.frag # found chain 1w2yA in training set T0547 566 :DIHAIMDIL 1w2yA 214 :DFDTIYKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52400 # 2a84A.566.226 read from T0547.t2k.many.frag # found chain 2a84A in training set Warning: unaligning (T0547)D566 (2a84A)G227 because S (epsilon) conformation "forbidden" or filtered. T0547 567 :IHAIMDIL 2a84A 228 :AQAALDAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=52401 # 1dk0A.566.142 read from T0547.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)D566 (1dk0A)D143 because D (zeta) conformation "forbidden" or filtered. T0547 567 :IHAIMDIL 1dk0A 144 :TGALETAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=52402 # 1kyqA.566.239 read from T0547.t2k.many.frag # found chain 1kyqA in template set T0547 566 :DIHAIMDIL 1kyqA 240 :DVKRLLDLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52403 # 1yvvA.566.244 read from T0547.t2k.many.frag # found chain 1yvvA in template set T0547 566 :DIHAIMDIL 1yvvA 245 :SREQVIEHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52404 # 1z53A.566.253 read from T0547.t2k.many.frag # found chain 1z53A in template set T0547 566 :DIHAIMDIL 1z53A 254 :DQDKFFKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52405 # 1ta8A.566.262 read from T0547.t2k.many.frag # found chain 1ta8A in training set T0547 566 :DIHAIMDIL 1ta8A 263 :SIDEVWAYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52406 # 1fc3A.566.60 read from T0547.t2k.many.frag # found chain 1fc3A in template set T0547 566 :DIHAIMDIL 1fc3A 200 :TASRVERAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52407 # 2d2mC.566.82 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 566 :DIHAIMDIL 2d2mC 83 :DPAVLNEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52408 # 1pdo.566.108 read from T0547.t2k.many.frag # found chain 1pdo in training set T0547 566 :DIHAIMDIL 1pdo 110 :SFDELVALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52409 # 1u84A.566.45 read from T0547.t2k.many.frag # found chain 1u84A in training set T0547 566 :DIHAIMDIL 1u84A 43 :DARTLAARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52410 # 1wbeA.566.171 read from T0547.t2k.many.frag # found chain 1wbeA in training set T0547 566 :DIHAIMDIL 1wbeA 172 :TEEECLEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52411 # 1yb3A.566.153 read from T0547.t2k.many.frag # found chain 1yb3A in training set T0547 566 :DIHAIMDIL 1yb3A 146 :DKEEVKREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52412 # 1zpvA.566.57 read from T0547.t2k.many.frag # found chain 1zpvA in template set T0547 566 :DIHAIMDIL 1zpvA 55 :DFTYLRNEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52413 # 1xszA.566.330 read from T0547.t2k.many.frag # found chain 1xszA in training set T0547 566 :DIHAIMDIL 1xszA 329 :EVGDLIKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52414 # 1e7uA.566.918 read from T0547.t2k.many.frag # found chain 1e7uA in template set T0547 566 :DIHAIMDIL 1e7uA 1060 :SEEDAKKYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52415 # 1r0vA.566.200 read from T0547.t2k.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)D566 (1r0vA)D201 because Y (epsilon') conformation "forbidden" or filtered. T0547 567 :IHAIMDIL 1r0vA 202 :REELVKRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=52416 # 1xrjA.566.157 read from T0547.t2k.many.frag # found chain 1xrjA in template set T0547 566 :DIHAIMDIL 1xrjA 158 :DADTRLSRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52417 # 1knzA.566.37 read from T0547.t2k.many.frag # found chain 1knzA in template set T0547 566 :DIHAIMDIL 1knzA 38 :DYQDIYSRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52418 # 1twfB.566.591 read from T0547.t2k.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)D566 (1twfB)N592 because L (left) conformation "forbidden" or filtered. T0547 567 :IHAIMDIL 1twfB 593 :PARLMETL Number of specific fragments extracted= 1 number of extra gaps= 1 total=52419 # 1dqaA.566.302 read from T0547.t2k.many.frag # found chain 1dqaA in template set Warning: unaligning (T0547)D566 (1dqaA)T724 because E (beta_S) conformation "forbidden" or filtered. T0547 567 :IHAIMDIL 1dqaA 725 :TEAMIEVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=52420 # 2auwA.566.104 read from T0547.t2k.many.frag # found chain 2auwA in template set T0547 566 :DIHAIMDIL 2auwA 103 :SLTTAAEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52421 # 1r9jA.567.643 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 567 :IHAIMDILN 1r9jA 642 :VEEVVRTGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52422 # 2d2mC.567.83 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 567 :IHAIMDILN 2d2mC 84 :PAVLNEQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52423 # 1dk0A.567.143 read from T0547.t2k.many.frag # found chain 1dk0A in training set T0547 567 :IHAIMDILN 1dk0A 144 :TGALETALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52424 # 1pswA.567.331 read from T0547.t2k.many.frag # found chain 1pswA in template set T0547 567 :IHAIMDILN 1pswA 332 :PQRVLEELN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52425 # 1ail.567.53 read from T0547.t2k.many.frag # found chain 1ail in template set T0547 567 :IHAIMDILN 1ail 54 :IEAATHVGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52426 # 2a84A.567.227 read from T0547.t2k.many.frag # found chain 2a84A in training set T0547 567 :IHAIMDILN 2a84A 228 :AQAALDAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52427 # 1kyqA.567.240 read from T0547.t2k.many.frag # found chain 1kyqA in template set T0547 567 :IHAIMDILN 1kyqA 241 :VKRLLDLFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52428 # 1ta8A.567.263 read from T0547.t2k.many.frag # found chain 1ta8A in training set T0547 567 :IHAIMDILN 1ta8A 264 :IDEVWAYIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52429 # 1ks9A.567.223 read from T0547.t2k.many.frag # found chain 1ks9A in training set T0547 567 :IHAIMDILN 1ks9A 224 :AEDLRDYVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=52430 1f45B expands to /projects/compbio/data/pdb/1f45.pdb.gz 1f45B:# 1f45B.567.108 read from T0547.t2k.many.frag # adding 1f45B to template set # found chain 1f45B in template set T0547 567 :IHAIMDILN 1f45B 109 :LKMYQVEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52431 # 2bmaA.567.415 read from T0547.t2k.many.frag # found chain 2bmaA in template set T0547 567 :IHAIMDILN 2bmaA 395 :RETVDEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52432 # 1w2yA.567.214 read from T0547.t2k.many.frag # found chain 1w2yA in training set T0547 567 :IHAIMDILN 1w2yA 215 :FDTIYKKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52433 # 1wbeA.567.172 read from T0547.t2k.many.frag # found chain 1wbeA in training set T0547 567 :IHAIMDILN 1wbeA 173 :EEECLEKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52434 # 1ytaA.567.80 read from T0547.t2k.many.frag # found chain 1ytaA in template set T0547 567 :IHAIMDILN 1ytaA 81 :DREAELATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52435 # 1v4vA.567.320 read from T0547.t2k.many.frag # found chain 1v4vA in training set T0547 567 :IHAIMDILN 1v4vA 321 :PEGVYRVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52436 # 1gx5A.567.496 read from T0547.t2k.many.frag # found chain 1gx5A in template set T0547 567 :IHAIMDILN 1gx5A 497 :LRVWRHRAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52437 # 1ash.567.82 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 567 :IHAIMDILN 1ash 82 :RETFNAYTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52438 # 1xszA.567.331 read from T0547.t2k.many.frag # found chain 1xszA in training set T0547 567 :IHAIMDILN 1xszA 330 :VGDLIKAYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52439 # 1zpvA.567.58 read from T0547.t2k.many.frag # found chain 1zpvA in template set T0547 567 :IHAIMDILN 1zpvA 56 :FTYLRNEFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52440 # 1pdo.567.109 read from T0547.t2k.many.frag # found chain 1pdo in training set T0547 567 :IHAIMDILN 1pdo 111 :FDELVALAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52441 # 1u84A.567.46 read from T0547.t2k.many.frag # found chain 1u84A in training set T0547 567 :IHAIMDILN 1u84A 44 :ARTLAARIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52442 1j93A expands to /projects/compbio/data/pdb/1j93.pdb.gz 1j93A:# 1j93A.567.304 read from T0547.t2k.many.frag # adding 1j93A to template set # found chain 1j93A in template set T0547 567 :IHAIMDILN 1j93A 304 :KEFITNRIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52443 # 1r0pA.567.281 read from T0547.t2k.many.frag # found chain 1r0pA in training set T0547 567 :IHAIMDILN 1r0pA 1330 :FSELVSRIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52444 1mvlA expands to /projects/compbio/data/pdb/1mvl.pdb.gz 1mvlA:# 1mvlA.567.185 read from T0547.t2k.many.frag # adding 1mvlA to template set # found chain 1mvlA in template set T0547 567 :IHAIMDILN 1mvlA 186 :PSLIYSTVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52445 # 1e7uA.567.919 read from T0547.t2k.many.frag # found chain 1e7uA in template set T0547 567 :IHAIMDILN 1e7uA 1061 :EEDAKKYFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52446 # 1hx6A.567.319 read from T0547.t2k.many.frag # found chain 1hx6A in training set T0547 567 :IHAIMDILN 1hx6A 321 :PKTWAAQTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52447 # 1knzA.567.38 read from T0547.t2k.many.frag # found chain 1knzA in template set T0547 567 :IHAIMDILN 1knzA 39 :YQDIYSRVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52448 # 1ka8A.567.55 read from T0547.t2k.many.frag # found chain 1ka8A in template set T0547 567 :IHAIMDILN 1ka8A 56 :LKMFGLGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=52449 # 1fc3A.567.61 read from T0547.t2k.many.frag # found chain 1fc3A in template set T0547 567 :IHAIMDILN 1fc3A 201 :ASRVERAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52450 # 1yvvA.567.245 read from T0547.t2k.many.frag # found chain 1yvvA in template set T0547 567 :IHAIMDILN 1yvvA 246 :REQVIEHLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=52451 # 1r9jA.568.644 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 568 :HAIMDILNE 1r9jA 643 :EEVVRTGRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52452 # 1pswA.568.332 read from T0547.t2k.many.frag # found chain 1pswA in template set T0547 568 :HAIMDILNE 1pswA 333 :QRVLEELNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52453 # 1kyqA.568.241 read from T0547.t2k.many.frag # found chain 1kyqA in template set T0547 568 :HAIMDILNE 1kyqA 242 :KRLLDLFKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52454 # 2d2mC.568.84 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 568 :HAIMDILNE 2d2mC 85 :AVLNEQLAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=52455 # 1f45B.568.109 read from T0547.t2k.many.frag # found chain 1f45B in template set T0547 568 :HAIMDILNE 1f45B 110 :KMYQVEFKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52456 # 1wbeA.568.173 read from T0547.t2k.many.frag # found chain 1wbeA in training set T0547 568 :HAIMDILNE 1wbeA 174 :EECLEKVRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52457 # 1w2yA.568.215 read from T0547.t2k.many.frag # found chain 1w2yA in training set T0547 568 :HAIMDILNE 1w2yA 216 :DTIYKKLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52458 # 2a84A.568.228 read from T0547.t2k.many.frag # found chain 2a84A in training set T0547 568 :HAIMDILNE 2a84A 229 :QAALDAARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52459 # 1dk0A.568.144 read from T0547.t2k.many.frag # found chain 1dk0A in training set T0547 568 :HAIMDILNE 1dk0A 145 :GALETALNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52460 # 1u84A.568.47 read from T0547.t2k.many.frag # found chain 1u84A in training set T0547 568 :HAIMDILNE 1u84A 45 :RTLAARIQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52461 # 1ks9A.568.224 read from T0547.t2k.many.frag # found chain 1ks9A in training set T0547 568 :HAIMDILNE 1ks9A 225 :EDLRDYVMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52462 # 2bmaA.568.416 read from T0547.t2k.many.frag # found chain 2bmaA in template set T0547 568 :HAIMDILNE 2bmaA 396 :ETVDEKLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52463 # 1ta8A.568.264 read from T0547.t2k.many.frag # found chain 1ta8A in training set T0547 568 :HAIMDILNE 1ta8A 265 :DEVWAYIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52464 # 1v4vA.568.321 read from T0547.t2k.many.frag # found chain 1v4vA in training set T0547 568 :HAIMDILNE 1v4vA 322 :EGVYRVVKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52465 # 1ail.568.54 read from T0547.t2k.many.frag # found chain 1ail in template set T0547 568 :HAIMDILNE 1ail 55 :EAATHVGKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52466 # 1fc3A.568.62 read from T0547.t2k.many.frag # found chain 1fc3A in template set T0547 568 :HAIMDILNE 1fc3A 202 :SRVERAIRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=52467 # 1pdo.568.110 read from T0547.t2k.many.frag # found chain 1pdo in training set T0547 568 :HAIMDILNE 1pdo 112 :DELVALAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52468 # 1j93A.568.305 read from T0547.t2k.many.frag # found chain 1j93A in template set T0547 568 :HAIMDILNE 1j93A 305 :EFITNRIND Number of specific fragments extracted= 1 number of extra gaps= 0 total=52469 # 1zpvA.568.59 read from T0547.t2k.many.frag # found chain 1zpvA in template set T0547 568 :HAIMDILNE 1zpvA 57 :TYLRNEFEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52470 # 1ytaA.568.81 read from T0547.t2k.many.frag # found chain 1ytaA in template set T0547 568 :HAIMDILNE 1ytaA 82 :REAELATLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52471 # 1gx5A.568.497 read from T0547.t2k.many.frag # found chain 1gx5A in template set T0547 568 :HAIMDILNE 1gx5A 498 :RVWRHRARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52472 1bco expands to /projects/compbio/data/pdb/1bco.pdb.gz 1bco:Warning: there is no chain 1bco will retry with 1bcoA # 1bco.568.186 read from T0547.t2k.many.frag # adding 1bco to template set # found chain 1bco in template set T0547 568 :HAIMDILNE 1bco 434 :ELFLKTLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52473 # 1ash.568.83 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 568 :HAIMDILNE 1ash 83 :ETFNAYTRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52474 # 1r0pA.568.282 read from T0547.t2k.many.frag # found chain 1r0pA in training set T0547 568 :HAIMDILNE 1r0pA 1331 :SELVSRISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52475 # 1hx6A.568.320 read from T0547.t2k.many.frag # found chain 1hx6A in training set T0547 568 :HAIMDILNE 1hx6A 322 :KTWAAQTRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52476 # 1tv8A.568.298 read from T0547.t2k.many.frag # found chain 1tv8A in template set T0547 568 :HAIMDILNE 1tv8A 299 :EELKEQFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52477 # 1yvvA.568.246 read from T0547.t2k.many.frag # found chain 1yvvA in template set T0547 568 :HAIMDILNE 1yvvA 247 :EQVIEHLHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52478 # 2basA.568.296 read from T0547.t2k.many.frag # found chain 2basA in template set T0547 568 :HAIMDILNE 2basA 273 :EQFYKRVHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52479 # 1e7uA.568.920 read from T0547.t2k.many.frag # found chain 1e7uA in template set T0547 568 :HAIMDILNE 1e7uA 1062 :EDAKKYFLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52480 # 1knzA.568.39 read from T0547.t2k.many.frag # found chain 1knzA in template set T0547 568 :HAIMDILNE 1knzA 40 :QDIYSRVKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52481 # 2d2mC.569.85 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 569 :AIMDILNER 2d2mC 86 :VLNEQLAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52482 # 1dk0A.569.145 read from T0547.t2k.many.frag # found chain 1dk0A in training set T0547 569 :AIMDILNER 1dk0A 146 :ALETALNGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52483 # 1f45B.569.110 read from T0547.t2k.many.frag # found chain 1f45B in template set T0547 569 :AIMDILNER 1f45B 111 :MYQVEFKTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=52484 # 1r9jA.569.645 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 569 :AIMDILNER 1r9jA 644 :EVVRTGREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52485 # 1kyqA.569.242 read from T0547.t2k.many.frag # found chain 1kyqA in template set T0547 569 :AIMDILNER 1kyqA 243 :RLLDLFKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=52486 # 1pswA.569.333 read from T0547.t2k.many.frag # found chain 1pswA in template set T0547 569 :AIMDILNER 1pswA 334 :RVLEELNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52487 # 2arcA.569.122 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 569 :AIMDILNER 2arcA 129 :HFSDLFGQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52488 # 1ta8A.569.265 read from T0547.t2k.many.frag # found chain 1ta8A in training set Warning: unaligning (T0547)R577 (1ta8A)Y274 because G (3-10) conformation "forbidden" or filtered. T0547 569 :AIMDILNE 1ta8A 266 :EVWAYIEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=52489 # 1w2yA.569.216 read from T0547.t2k.many.frag # found chain 1w2yA in training set T0547 569 :AIMDILNER 1w2yA 217 :TIYKKLEEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=52490 # 2bmaA.569.417 read from T0547.t2k.many.frag # found chain 2bmaA in template set T0547 569 :AIMDILNER 2bmaA 397 :TVDEKLKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52491 # 1ash.569.84 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 569 :AIMDILNER 1ash 84 :TFNAYTREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52492 # 1j93A.569.306 read from T0547.t2k.many.frag # found chain 1j93A in template set T0547 569 :AIMDILNER 1j93A 306 :FITNRINDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52493 # 1mvlA.569.187 read from T0547.t2k.many.frag # found chain 1mvlA in template set T0547 569 :AIMDILNER 1mvlA 188 :LIYSTVRLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52494 # 1ks9A.569.225 read from T0547.t2k.many.frag # found chain 1ks9A in training set T0547 569 :AIMDILNER 1ks9A 226 :DLRDYVMQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52495 # 1h54A.569.272 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 569 :AIMDILNER 1h54A 273 :SLTAAMHQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52496 # 1u84A.569.48 read from T0547.t2k.many.frag # found chain 1u84A in training set T0547 569 :AIMDILNER 1u84A 46 :TLAARIQSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52497 # 1gx5A.569.498 read from T0547.t2k.many.frag # found chain 1gx5A in template set T0547 569 :AIMDILNER 1gx5A 499 :VWRHRARSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52498 # 1pdo.569.111 read from T0547.t2k.many.frag # found chain 1pdo in training set T0547 569 :AIMDILNER 1pdo 113 :ELVALAVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=52499 # 1ail.569.55 read from T0547.t2k.many.frag # found chain 1ail in template set T0547 569 :AIMDILNER 1ail 56 :AATHVGKQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52500 # 2a84A.569.229 read from T0547.t2k.many.frag # found chain 2a84A in training set T0547 569 :AIMDILNER 2a84A 230 :AALDAARAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52501 # 1ng6A.569.98 read from T0547.t2k.many.frag # found chain 1ng6A in training set T0547 569 :AIMDILNER 1ng6A 99 :ELRTIVNET Number of specific fragments extracted= 1 number of extra gaps= 0 total=52502 1hlvA expands to /projects/compbio/data/pdb/1hlv.pdb.gz 1hlvA:# 1hlvA.569.98 read from T0547.t2k.many.frag # adding 1hlvA to template set # found chain 1hlvA in template set T0547 569 :AIMDILNER 1hlvA 99 :ILKEKALRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52503 # 1zpvA.569.60 read from T0547.t2k.many.frag # found chain 1zpvA in template set T0547 569 :AIMDILNER 1zpvA 58 :YLRNEFEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52504 # 1v4vA.569.322 read from T0547.t2k.many.frag # found chain 1v4vA in training set T0547 569 :AIMDILNER 1v4vA 323 :GVYRVVKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52505 # 1wbeA.569.174 read from T0547.t2k.many.frag # found chain 1wbeA in training set T0547 569 :AIMDILNER 1wbeA 175 :ECLEKVRLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52506 # 1xszA.569.333 read from T0547.t2k.many.frag # found chain 1xszA in training set T0547 569 :AIMDILNER 1xszA 332 :DLIKAYDNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52507 # 1fc3A.569.63 read from T0547.t2k.many.frag # found chain 1fc3A in template set T0547 569 :AIMDILNER 1fc3A 203 :RVERAIRHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52508 # 1r0pA.569.283 read from T0547.t2k.many.frag # found chain 1r0pA in training set T0547 569 :AIMDILNER 1r0pA 1332 :ELVSRISAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52509 # 1ka8A.569.57 read from T0547.t2k.many.frag # found chain 1ka8A in template set T0547 569 :AIMDILNER 1ka8A 58 :MFGLGLPVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=52510 # 1uehA.569.148 read from T0547.t2k.many.frag # found chain 1uehA in training set T0547 569 :AIMDILNER 1uehA 149 :WDIVQGVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52511 # 2d2mC.570.86 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 570 :IMDILNERI 2d2mC 87 :LNEQLAHLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52512 # 1f45B.570.111 read from T0547.t2k.many.frag # found chain 1f45B in template set T0547 570 :IMDILNERI 1f45B 112 :YQVEFKTMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52513 # 1kyqA.570.243 read from T0547.t2k.many.frag # found chain 1kyqA in template set T0547 570 :IMDILNERI 1kyqA 244 :LLDLFKVMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52514 # 2arcA.570.123 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 570 :IMDILNERI 2arcA 130 :FSDLFGQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=52515 # 1dk0A.570.146 read from T0547.t2k.many.frag # found chain 1dk0A in training set T0547 570 :IMDILNERI 1dk0A 147 :LETALNGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52516 # 1r9jA.570.646 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 570 :IMDILNERI 1r9jA 645 :VVRTGRELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52517 # 1pswA.570.334 read from T0547.t2k.many.frag # found chain 1pswA in template set T0547 570 :IMDILNERI 1pswA 335 :VLEELNALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52518 # 2bmaA.570.418 read from T0547.t2k.many.frag # found chain 2bmaA in template set T0547 570 :IMDILNERI 2bmaA 398 :VDEKLKEIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=52519 # 1j93A.570.307 read from T0547.t2k.many.frag # found chain 1j93A in template set T0547 570 :IMDILNERI 1j93A 307 :ITNRINDTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52520 # 1h54A.570.273 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 570 :IMDILNERI 1h54A 274 :LTAAMHQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52521 # 1mvlA.570.188 read from T0547.t2k.many.frag # found chain 1mvlA in template set T0547 570 :IMDILNERI 1mvlA 189 :IYSTVRLFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=52522 # 1u84A.570.49 read from T0547.t2k.many.frag # found chain 1u84A in training set T0547 570 :IMDILNERI 1u84A 47 :LAARIQSIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52523 # 1fc3A.570.64 read from T0547.t2k.many.frag # found chain 1fc3A in template set T0547 570 :IMDILNERI 1fc3A 204 :VERAIRHAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52524 # 1pdo.570.112 read from T0547.t2k.many.frag # found chain 1pdo in training set T0547 570 :IMDILNERI 1pdo 114 :LVALAVETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52525 # 1w2yA.570.217 read from T0547.t2k.many.frag # found chain 1w2yA in training set T0547 570 :IMDILNERI 1w2yA 218 :IYKKLEECY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52526 # 1bco.570.188 read from T0547.t2k.many.frag # found chain 1bco in template set T0547 570 :IMDILNERI 1bco 436 :FLKTLAEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52527 # 1zpvA.570.61 read from T0547.t2k.many.frag # found chain 1zpvA in template set T0547 570 :IMDILNERI 1zpvA 59 :LRNEFEAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52528 # 1gx5A.570.499 read from T0547.t2k.many.frag # found chain 1gx5A in template set T0547 570 :IMDILNERI 1gx5A 500 :WRHRARSVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52529 # 1u02A.570.214 read from T0547.t2k.many.frag # found chain 1u02A in template set T0547 570 :IMDILNERI 1u02A 215 :MRKILKFIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52530 1v74B expands to /projects/compbio/data/pdb/1v74.pdb.gz 1v74B:# 1v74B.570.73 read from T0547.t2k.many.frag # adding 1v74B to template set # found chain 1v74B in template set T0547 570 :IMDILNERI 1v74B 74 :LKVEVRSIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52531 # 1ka8A.570.58 read from T0547.t2k.many.frag # found chain 1ka8A in template set T0547 570 :IMDILNERI 1ka8A 59 :FGLGLPVML Number of specific fragments extracted= 1 number of extra gaps= 0 total=52532 # 1r0pA.570.284 read from T0547.t2k.many.frag # found chain 1r0pA in training set T0547 570 :IMDILNERI 1r0pA 1333 :LVSRISAIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52533 # 2bnxA.570.232 read from T0547.t2k.many.frag # found chain 2bnxA in template set T0547 570 :IMDILNERI 2bnxA 363 :DFFDLKGRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52534 # 1ash.570.85 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 570 :IMDILNERI 1ash 85 :FNAYTRELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52535 # 1ta8A.570.266 read from T0547.t2k.many.frag # found chain 1ta8A in training set T0547 570 :IMDILNERI 1ta8A 267 :VWAYIEEYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=52536 1w5tA expands to /projects/compbio/data/pdb/1w5t.pdb.gz 1w5tA:# 1w5tA.570.332 read from T0547.t2k.many.frag # adding 1w5tA to template set # found chain 1w5tA in template set T0547 570 :IMDILNERI 1w5tA 333 :LRQRYEDAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52537 # 1hlvA.570.99 read from T0547.t2k.many.frag # found chain 1hlvA in template set T0547 570 :IMDILNERI 1hlvA 100 :LKEKALRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52538 # 1ng6A.570.99 read from T0547.t2k.many.frag # found chain 1ng6A in training set T0547 570 :IMDILNERI 1ng6A 100 :LRTIVNETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52539 # 2a84A.570.230 read from T0547.t2k.many.frag # found chain 2a84A in training set T0547 570 :IMDILNERI 2a84A 231 :ALDAARAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52540 # 1v4vA.570.323 read from T0547.t2k.many.frag # found chain 1v4vA in training set T0547 570 :IMDILNERI 1v4vA 324 :VYRVVKGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52541 # 2d2mC.571.87 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 571 :MDILNERIS 2d2mC 88 :NEQLAHLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52542 # 1f45B.571.112 read from T0547.t2k.many.frag # found chain 1f45B in template set T0547 571 :MDILNERIS 1f45B 113 :QVEFKTMNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52543 # 2arcA.571.124 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 571 :MDILNERIS 2arcA 131 :SDLFGQIIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52544 # 1kyqA.571.244 read from T0547.t2k.many.frag # found chain 1kyqA in template set T0547 571 :MDILNERIS 1kyqA 245 :LDLFKVMFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52545 # 1dk0A.571.147 read from T0547.t2k.many.frag # found chain 1dk0A in training set T0547 571 :MDILNERIS 1dk0A 148 :ETALNGILD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52546 # 1r9jA.571.647 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 571 :MDILNERIS 1r9jA 646 :VRTGRELAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52547 # 1pswA.571.335 read from T0547.t2k.many.frag # found chain 1pswA in template set T0547 571 :MDILNERIS 1pswA 336 :LEELNALLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52548 # 1hlvA.571.100 read from T0547.t2k.many.frag # found chain 1hlvA in template set T0547 571 :MDILNERIS 1hlvA 101 :KEKALRIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52549 # 2bmaA.571.419 read from T0547.t2k.many.frag # found chain 2bmaA in template set T0547 571 :MDILNERIS 2bmaA 399 :DEKLKEIMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52550 # 1ash.571.86 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 571 :MDILNERIS 1ash 86 :NAYTRELLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52551 # 1h54A.571.274 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 571 :MDILNERIS 1h54A 275 :TAAMHQLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52552 # 1ng6A.571.100 read from T0547.t2k.many.frag # found chain 1ng6A in training set T0547 571 :MDILNERIS 1ng6A 101 :RTIVNETIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52553 # 1ks9A.571.227 read from T0547.t2k.many.frag # found chain 1ks9A in training set T0547 571 :MDILNERIS 1ks9A 228 :RDYVMQVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=52554 # 1j93A.571.308 read from T0547.t2k.many.frag # found chain 1j93A in template set T0547 571 :MDILNERIS 1j93A 308 :TNRINDTVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52555 # 1u84A.571.50 read from T0547.t2k.many.frag # found chain 1u84A in training set T0547 571 :MDILNERIS 1u84A 48 :AARIQSIYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52556 # 1r0pA.571.285 read from T0547.t2k.many.frag # found chain 1r0pA in training set T0547 571 :MDILNERIS 1r0pA 1334 :VSRISAIFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52557 # 1mvlA.571.189 read from T0547.t2k.many.frag # found chain 1mvlA in template set T0547 571 :MDILNERIS 1mvlA 190 :YSTVRLFWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52558 # 1gx5A.571.500 read from T0547.t2k.many.frag # found chain 1gx5A in template set T0547 571 :MDILNERIS 1gx5A 501 :RHRARSVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52559 # 1pdo.571.113 read from T0547.t2k.many.frag # found chain 1pdo in training set T0547 571 :MDILNERIS 1pdo 115 :VALAVETGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52560 # 1ta8A.571.267 read from T0547.t2k.many.frag # found chain 1ta8A in training set T0547 571 :MDILNERIS 1ta8A 268 :WAYIEEYHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52561 # 1fc3A.571.65 read from T0547.t2k.many.frag # found chain 1fc3A in template set T0547 571 :MDILNERIS 1fc3A 205 :ERAIRHAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52562 # 1zpvA.571.62 read from T0547.t2k.many.frag # found chain 1zpvA in template set T0547 571 :MDILNERIS 1zpvA 60 :RNEFEAFGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52563 # 1w2yA.571.218 read from T0547.t2k.many.frag # found chain 1w2yA in training set T0547 571 :MDILNERIS 1w2yA 219 :YKKLEECYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52564 # 1u02A.571.215 read from T0547.t2k.many.frag # found chain 1u02A in template set T0547 571 :MDILNERIS 1u02A 216 :RKILKFIEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=52565 1bh9B expands to /projects/compbio/data/pdb/1bh9.pdb.gz 1bh9B:# 1bh9B.571.53 read from T0547.t2k.many.frag # adding 1bh9B to template set # found chain 1bh9B in template set T0547 571 :MDILNERIS 1bh9B 166 :VEEALDVCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52566 # 1uehA.571.150 read from T0547.t2k.many.frag # found chain 1uehA in training set T0547 571 :MDILNERIS 1uehA 151 :IVQGVRQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52567 # 2a84A.571.231 read from T0547.t2k.many.frag # found chain 2a84A in training set T0547 571 :MDILNERIS 2a84A 232 :LDAARAVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52568 # 2basA.571.299 read from T0547.t2k.many.frag # found chain 2basA in template set T0547 571 :MDILNERIS 2basA 276 :YKRVHQAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52569 1tfr expands to /projects/compbio/data/pdb/1tfr.pdb.gz 1tfr:Warning: there is no chain 1tfr will retry with 1tfrA # 1tfr.571.267 read from T0547.t2k.many.frag # adding 1tfr to template set # found chain 1tfr in template set T0547 571 :MDILNERIS 1tfr 268 :ASNIVNYYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52570 # 1ka8A.571.59 read from T0547.t2k.many.frag # found chain 1ka8A in template set T0547 571 :MDILNERIS 1ka8A 60 :GLGLPVMLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52571 # 2d2mC.572.88 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 572 :DILNERISN 2d2mC 89 :EQLAHLSAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52572 # 1f45B.572.113 read from T0547.t2k.many.frag # found chain 1f45B in template set T0547 572 :DILNERISN 1f45B 114 :VEFKTMNAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52573 # 2arcA.572.125 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 572 :DILNERISN 2arcA 132 :DLFGQIINA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52574 # 1kyqA.572.245 read from T0547.t2k.many.frag # found chain 1kyqA in template set T0547 572 :DILNERISN 1kyqA 246 :DLFKVMFQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52575 # 1hlvA.572.101 read from T0547.t2k.many.frag # found chain 1hlvA in template set T0547 572 :DILNERISN 1hlvA 102 :EKALRIAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52576 # 1r9jA.572.648 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 572 :DILNERISN 1r9jA 647 :RTGRELAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52577 # 1ash.572.87 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 572 :DILNERISN 1ash 87 :AYTRELLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52578 # 1ng6A.572.101 read from T0547.t2k.many.frag # found chain 1ng6A in training set T0547 572 :DILNERISN 1ng6A 102 :TIVNETIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52579 # 1h54A.572.275 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 572 :DILNERISN 1h54A 276 :AAMHQLSDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52580 # 1mvlA.572.190 read from T0547.t2k.many.frag # found chain 1mvlA in template set T0547 572 :DILNERISN 1mvlA 191 :STVRLFWES Number of specific fragments extracted= 1 number of extra gaps= 0 total=52581 # 1dk0A.572.148 read from T0547.t2k.many.frag # found chain 1dk0A in training set T0547 572 :DILNERISN 1dk0A 149 :TALNGILDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52582 # 1j93A.572.309 read from T0547.t2k.many.frag # found chain 1j93A in template set T0547 572 :DILNERISN 1j93A 309 :NRINDTVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52583 # 1pdo.572.114 read from T0547.t2k.many.frag # found chain 1pdo in training set T0547 572 :DILNERISN 1pdo 116 :ALAVETGRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52584 # 2bmaA.572.420 read from T0547.t2k.many.frag # found chain 2bmaA in template set T0547 572 :DILNERISN 2bmaA 400 :EKLKEIMRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52585 # 2basA.572.300 read from T0547.t2k.many.frag # found chain 2basA in template set T0547 572 :DILNERISN 2basA 277 :KRVHQAVTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52586 # 1r0pA.572.286 read from T0547.t2k.many.frag # found chain 1r0pA in training set T0547 572 :DILNERISN 1r0pA 1335 :SRISAIFST Number of specific fragments extracted= 1 number of extra gaps= 0 total=52587 # 1u84A.572.51 read from T0547.t2k.many.frag # found chain 1u84A in training set T0547 572 :DILNERISN 1u84A 49 :ARIQSIYEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52588 # 1u02A.572.216 read from T0547.t2k.many.frag # found chain 1u02A in template set T0547 572 :DILNERISN 1u02A 217 :KILKFIEML Number of specific fragments extracted= 1 number of extra gaps= 0 total=52589 # 1pswA.572.336 read from T0547.t2k.many.frag # found chain 1pswA in template set T0547 572 :DILNERISN 1pswA 337 :EELNALLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52590 # 1bh9B.572.54 read from T0547.t2k.many.frag # found chain 1bh9B in template set T0547 572 :DILNERISN 1bh9B 167 :EEALDVCEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52591 # 1ks9A.572.228 read from T0547.t2k.many.frag # found chain 1ks9A in training set T0547 572 :DILNERISN 1ks9A 229 :DYVMQVIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52592 # 1v74B.572.75 read from T0547.t2k.many.frag # found chain 1v74B in template set T0547 572 :DILNERISN 1v74B 76 :VEVRSILEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52593 # 1zpvA.572.63 read from T0547.t2k.many.frag # found chain 1zpvA in template set T0547 572 :DILNERISN 1zpvA 61 :NEFEAFGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52594 # 1w5tA.572.334 read from T0547.t2k.many.frag # found chain 1w5tA in template set T0547 572 :DILNERISN 1w5tA 335 :QRYEDASLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52595 # 1tfr.572.268 read from T0547.t2k.many.frag # found chain 1tfr in template set T0547 572 :DILNERISN 1tfr 269 :SNIVNYYNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52596 # 1gx5A.572.501 read from T0547.t2k.many.frag # found chain 1gx5A in template set T0547 572 :DILNERISN 1gx5A 502 :HRARSVRAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52597 # 1ta8A.572.268 read from T0547.t2k.many.frag # found chain 1ta8A in training set T0547 572 :DILNERISN 1ta8A 269 :AYIEEYHEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52598 # 1uehA.572.151 read from T0547.t2k.many.frag # found chain 1uehA in training set T0547 572 :DILNERISN 1uehA 152 :VQGVRQLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52599 # 1yt3A.572.307 read from T0547.t2k.many.frag # found chain 1yt3A in training set T0547 572 :DILNERISN 1yt3A 308 :KAIKSLITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52600 # 1bco.572.190 read from T0547.t2k.many.frag # found chain 1bco in template set T0547 572 :DILNERISN 1bco 438 :KTLAEGVAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=52601 # 2d2mC.573.89 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 573 :ILNERISNS 2d2mC 90 :QLAHLSAQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=52602 # 1f45B.573.114 read from T0547.t2k.many.frag # found chain 1f45B in template set T0547 573 :ILNERISNS 1f45B 115 :EFKTMNAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52603 # 1dk0A.573.149 read from T0547.t2k.many.frag # found chain 1dk0A in training set T0547 573 :ILNERISNS 1dk0A 150 :ALNGILDDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52604 # 2arcA.573.126 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 573 :ILNERISNS 2arcA 133 :LFGQIINAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52605 # 1hlvA.573.102 read from T0547.t2k.many.frag # found chain 1hlvA in template set T0547 573 :ILNERISNS 1hlvA 103 :KALRIAEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52606 # 1kyqA.573.246 read from T0547.t2k.many.frag # found chain 1kyqA in template set T0547 573 :ILNERISNS 1kyqA 247 :LFKVMFQEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52607 # 1ng6A.573.102 read from T0547.t2k.many.frag # found chain 1ng6A in training set T0547 573 :ILNERISNS 1ng6A 103 :IVNETIAEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52608 # 1r9jA.573.649 read from T0547.t2k.many.frag # found chain 1r9jA in template set T0547 573 :ILNERISNS 1r9jA 648 :TGRELAKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52609 # 1ash.573.88 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 573 :ILNERISNS 1ash 88 :YTRELLDRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=52610 # 1h54A.573.276 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 573 :ILNERISNS 1h54A 277 :AMHQLSDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52611 # 1tfr.573.269 read from T0547.t2k.many.frag # found chain 1tfr in template set T0547 573 :ILNERISNS 1tfr 270 :NIVNYYNSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52612 # 1bh9B.573.55 read from T0547.t2k.many.frag # found chain 1bh9B in template set T0547 573 :ILNERISNS 1bh9B 168 :EALDVCEKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=52613 # 1r0pA.573.287 read from T0547.t2k.many.frag # found chain 1r0pA in training set T0547 573 :ILNERISNS 1r0pA 1336 :RISAIFSTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52614 # 1j93A.573.310 read from T0547.t2k.many.frag # found chain 1j93A in template set T0547 573 :ILNERISNS 1j93A 310 :RINDTVKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52615 # 1ks9A.573.229 read from T0547.t2k.many.frag # found chain 1ks9A in training set T0547 573 :ILNERISNS 1ks9A 230 :YVMQVIDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52616 # 1pdo.573.115 read from T0547.t2k.many.frag # found chain 1pdo in training set T0547 573 :ILNERISNS 1pdo 117 :LAVETGREG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52617 # 1mvlA.573.191 read from T0547.t2k.many.frag # found chain 1mvlA in template set Warning: unaligning (T0547)S581 because last residue in template chain is (1mvlA)Q200 T0547 573 :ILNERISN 1mvlA 192 :TVRLFWES Number of specific fragments extracted= 1 number of extra gaps= 0 total=52618 # 1ytaA.573.86 read from T0547.t2k.many.frag # found chain 1ytaA in template set T0547 573 :ILNERISNS 1ytaA 87 :ATLEFLKQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=52619 # 1u84A.573.52 read from T0547.t2k.many.frag # found chain 1u84A in training set T0547 573 :ILNERISNS 1u84A 50 :RIQSIYEFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52620 # 1pinA.573.87 read from T0547.t2k.many.frag # found chain 1pinA in training set T0547 573 :ILNERISNS 1pinA 88 :LINGYIQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52621 # 2basA.573.301 read from T0547.t2k.many.frag # found chain 2basA in template set T0547 573 :ILNERISNS 2basA 278 :RVHQAVTSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52622 # 1uehA.573.152 read from T0547.t2k.many.frag # found chain 1uehA in training set T0547 573 :ILNERISNS 1uehA 153 :QGVRQLAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52623 # 1v74B.573.76 read from T0547.t2k.many.frag # found chain 1v74B in template set T0547 573 :ILNERISNS 1v74B 77 :EVRSILEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52624 # 1u02A.573.217 read from T0547.t2k.many.frag # found chain 1u02A in template set T0547 573 :ILNERISNS 1u02A 218 :ILKFIEMLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52625 # 1e0tA.573.431 read from T0547.t2k.many.frag # found chain 1e0tA in template set T0547 573 :ILNERISNS 1e0tA 432 :LGKELALQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52626 # 1w5tA.573.335 read from T0547.t2k.many.frag # found chain 1w5tA in template set T0547 573 :ILNERISNS 1w5tA 336 :RYEDASLTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=52627 # 1zpvA.573.64 read from T0547.t2k.many.frag # found chain 1zpvA in template set T0547 573 :ILNERISNS 1zpvA 62 :EFEAFGQTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52628 # 1e7uA.573.925 read from T0547.t2k.many.frag # found chain 1e7uA in template set T0547 573 :ILNERISNS 1e7uA 1067 :YFLDQIEVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=52629 # 1ta8A.573.269 read from T0547.t2k.many.frag # found chain 1ta8A in training set T0547 573 :ILNERISNS 1ta8A 270 :YIEEYHEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52630 # 1bco.573.191 read from T0547.t2k.many.frag # found chain 1bco in template set T0547 573 :ILNERISNS 1bco 439 :TLAEGVAMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52631 # 2d2mC.574.90 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 574 :LNERISNSK 2d2mC 91 :LAHLSAQHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52632 # 1dk0A.574.150 read from T0547.t2k.many.frag # found chain 1dk0A in training set T0547 574 :LNERISNSK 1dk0A 151 :LNGILDDYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52633 # 1hlvA.574.103 read from T0547.t2k.many.frag # found chain 1hlvA in template set Warning: unaligning (T0547)K582 (1hlvA)G112 because T (delta_L) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1hlvA 104 :ALRIAEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=52634 # 1f45B.574.115 read from T0547.t2k.many.frag # found chain 1f45B in template set T0547 574 :LNERISNSK 1f45B 116 :FKTMNAKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52635 # 2arcA.574.127 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 574 :LNERISNSK 2arcA 134 :FGQIINAGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52636 # 1ng6A.574.103 read from T0547.t2k.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)K582 (1ng6A)G112 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1ng6A 104 :VNETIAEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=52637 # 1tfr.574.270 read from T0547.t2k.many.frag # found chain 1tfr in template set Warning: unaligning (T0547)N580 (1tfr)S277 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S581 (1tfr)Y278 because P (beta_P) conformation "forbidden" or filtered. T0547 574 :LNERIS 1tfr 271 :IVNYYN T0547 582 :K 1tfr 279 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=52639 # 1h54A.574.277 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 574 :LNERISNSK 1h54A 278 :MHQLSDKVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52640 # 1bh9B.574.56 read from T0547.t2k.many.frag # found chain 1bh9B in template set T0547 574 :LNERISNSK 1bh9B 169 :ALDVCEKWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52641 # 1ash.574.89 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 574 :LNERISNSK 1ash 89 :TRELLDRHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52642 # 1kyqA.574.247 read from T0547.t2k.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)K582 (1kyqA)N256 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1kyqA 248 :FKVMFQEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=52643 # 1yt3A.574.309 read from T0547.t2k.many.frag # found chain 1yt3A in training set T0547 574 :LNERISNSK 1yt3A 310 :IKSLITDVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52644 # 2basA.574.302 read from T0547.t2k.many.frag # found chain 2basA in template set T0547 574 :LNERISNSK 2basA 279 :VHQAVTSLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52645 2d2sA expands to /projects/compbio/data/pdb/2d2s.pdb.gz 2d2sA:# 2d2sA.574.204 read from T0547.t2k.many.frag # adding 2d2sA to template set # found chain 2d2sA in template set T0547 574 :LNERISNSK 2d2sA 723 :SRKQIDGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52646 # 1uehA.574.153 read from T0547.t2k.many.frag # found chain 1uehA in training set T0547 574 :LNERISNSK 1uehA 154 :GVRQLAEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52647 # 1vhtA.574.194 read from T0547.t2k.many.frag # found chain 1vhtA in training set T0547 574 :LNERISNSK 1vhtA 193 :YLQLASQFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52648 1z77A expands to /projects/compbio/data/pdb/1z77.pdb.gz 1z77A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1z77A.574.131 read from T0547.t2k.many.frag # adding 1z77A to template set # found chain 1z77A in template set T0547 574 :LNERISNSK 1z77A 132 :VREKLKDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52649 # 1qtnB.574.61 read from T0547.t2k.many.frag # found chain 1qtnB in training set Warning: unaligning (T0547)N580 (1qtnB)N452 because G (3-10) conformation "forbidden" or filtered. T0547 574 :LNERIS 1qtnB 446 :VNYEVS T0547 581 :SK 1qtnB 453 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=52651 # 1pinA.574.88 read from T0547.t2k.many.frag # found chain 1pinA in training set T0547 574 :LNERISNSK 1pinA 89 :INGYIQKIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52652 # 1pdo.574.116 read from T0547.t2k.many.frag # found chain 1pdo in training set T0547 574 :LNERISNSK 1pdo 118 :AVETGREGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52653 # 1vpbA.574.93 read from T0547.t2k.many.frag # found chain 1vpbA in training set T0547 574 :LNERISNSK 1vpbA 82 :IKNGIDSTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52654 # 1j93A.574.311 read from T0547.t2k.many.frag # found chain 1j93A in template set T0547 574 :LNERISNSK 1j93A 311 :INDTVKKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52655 # 1ytaA.574.87 read from T0547.t2k.many.frag # found chain 1ytaA in template set T0547 574 :LNERISNSK 1ytaA 88 :TLEFLKQWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52656 # 1zpwX.574.48 read from T0547.t2k.many.frag # found chain 1zpwX in training set T0547 574 :LNERISNSK 1zpwX 49 :LRRRARRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52657 # 1r0pA.574.288 read from T0547.t2k.many.frag # found chain 1r0pA in training set T0547 574 :LNERISNSK 1r0pA 1337 :ISAIFSTFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52658 # 1mvlA.574.192 read from T0547.t2k.many.frag # found chain 1mvlA in template set Warning: unaligning (T0547)S581 because last residue in template chain is (1mvlA)Q200 T0547 574 :LNERISN 1mvlA 193 :VRLFWES Number of specific fragments extracted= 1 number of extra gaps= 0 total=52659 # 1ecrA.574.189 read from T0547.t2k.many.frag # found chain 1ecrA in template set T0547 574 :LNERISNSK 1ecrA 190 :LEKSLKSPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52660 # 1gx5A.574.503 read from T0547.t2k.many.frag # found chain 1gx5A in template set T0547 574 :LNERISNSK 1gx5A 504 :ARSVRARLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52661 # 1bgf.574.64 read from T0547.t2k.many.frag # found chain 1bgf in training set T0547 574 :LNERISNSK 1bgf 64 :LDEQLGRVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52662 # 2a84A.574.234 read from T0547.t2k.many.frag # found chain 2a84A in training set T0547 574 :LNERISNSK 2a84A 235 :ARAVLDAAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=52663 # 2d2mC.575.91 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 575 :NERISNSKL 2d2mC 92 :AHLSAQHQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52664 # 1hlvA.575.104 read from T0547.t2k.many.frag # found chain 1hlvA in template set T0547 575 :NERISNSKL 1hlvA 105 :LRIAEELGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=52665 # 1tfr.575.271 read from T0547.t2k.many.frag # found chain 1tfr in template set Warning: unaligning (T0547)S581 (1tfr)Y278 because P (beta_P) conformation "forbidden" or filtered. T0547 575 :NERISN 1tfr 272 :VNYYNS T0547 582 :KL 1tfr 279 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=52667 # 1dk0A.575.151 read from T0547.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)K582 (1dk0A)G159 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1dk0A 152 :NGILDDY T0547 583 :L 1dk0A 160 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=52669 # 1ng6A.575.104 read from T0547.t2k.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)K582 (1ng6A)G112 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1ng6A 105 :NETIAEV T0547 583 :L 1ng6A 113 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=52671 # 1bh9B.575.57 read from T0547.t2k.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)S581 (1bh9B)W176 because G (3-10) conformation "forbidden" or filtered. T0547 575 :NERISN 1bh9B 170 :LDVCEK T0547 582 :KL 1bh9B 177 :GE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52673 # 1f45B.575.116 read from T0547.t2k.many.frag # found chain 1f45B in template set T0547 575 :NERISNSKL 1f45B 117 :KTMNAKLLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=52674 # 2arcA.575.128 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 575 :NERISNSKL 2arcA 135 :GQIINAGQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52675 # 1h54A.575.278 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 575 :NERISNSKL 1h54A 279 :HQLSDKVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52676 # 2d2sA.575.205 read from T0547.t2k.many.frag # found chain 2d2sA in template set T0547 575 :NERISNSKL 2d2sA 724 :RKQIDGLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52677 # 1qtnB.575.62 read from T0547.t2k.many.frag # found chain 1qtnB in training set Warning: unaligning (T0547)N580 (1qtnB)N452 because G (3-10) conformation "forbidden" or filtered. T0547 575 :NERIS 1qtnB 447 :NYEVS T0547 581 :SKL 1qtnB 453 :KDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=52679 # 1ash.575.90 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 575 :NERISNSKL 1ash 90 :RELLDRHAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52680 # 1yt3A.575.310 read from T0547.t2k.many.frag # found chain 1yt3A in training set T0547 575 :NERISNSKL 1yt3A 311 :KSLITDVSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52681 # 1uehA.575.154 read from T0547.t2k.many.frag # found chain 1uehA in training set T0547 575 :NERISNSKL 1uehA 155 :VRQLAEKVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52682 # 1pdo.575.117 read from T0547.t2k.many.frag # found chain 1pdo in training set T0547 575 :NERISNSKL 1pdo 119 :VETGREGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52683 # 2basA.575.303 read from T0547.t2k.many.frag # found chain 2basA in template set T0547 575 :NERISNSKL 2basA 280 :HQAVTSLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52684 # 1ecrA.575.190 read from T0547.t2k.many.frag # found chain 1ecrA in template set T0547 575 :NERISNSKL 1ecrA 191 :EKSLKSPRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52685 # 1zpwX.575.49 read from T0547.t2k.many.frag # found chain 1zpwX in training set T0547 575 :NERISNSKL 1zpwX 50 :RRRARRLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52686 # 1vhtA.575.195 read from T0547.t2k.many.frag # found chain 1vhtA in training set T0547 575 :NERISNSKL 1vhtA 194 :LQLASQFVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52687 # 1vpbA.575.94 read from T0547.t2k.many.frag # found chain 1vpbA in training set T0547 575 :NERISNSKL 1vpbA 83 :KNGIDSTRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52688 # 1z77A.575.132 read from T0547.t2k.many.frag # found chain 1z77A in template set T0547 575 :NERISNSKL 1z77A 133 :REKLKDLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52689 # 1g8qA.575.15 read from T0547.t2k.many.frag # found chain 1g8qA in training set T0547 575 :NERISNSKL 1g8qA 128 :DQALQQAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52690 1p0yA expands to /projects/compbio/data/pdb/1p0y.pdb.gz 1p0yA:# 1p0yA.575.356 read from T0547.t2k.many.frag # adding 1p0yA to template set # found chain 1p0yA in template set T0547 575 :NERISNSKL 1p0yA 401 :REACKSALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52691 # 1dzkA.575.132 read from T0547.t2k.many.frag # found chain 1dzkA in training set T0547 575 :NERISNSKL 1dzkA 133 :KEVTRENGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52692 2axtB expands to /projects/compbio/data/pdb/2axt.pdb.gz 2axtB:# 2axtB.575.284 read from T0547.t2k.many.frag # adding 2axtB to template set # found chain 2axtB in template set T0547 575 :NERISNSKL 2axtB 285 :NRRVQASLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52693 1vqoP expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoP:# 1vqoP.575.102 read from T0547.t2k.many.frag # adding 1vqoP to template set # found chain 1vqoP in template set T0547 575 :NERISNSKL 1vqoP 102 :RTKLRELRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52694 # 1r0pA.575.289 read from T0547.t2k.many.frag # found chain 1r0pA in training set Warning: unaligning (T0547)S581 (1r0pA)F1344 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1r0pA)I1345 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L583 (1r0pA)G1346 because T (delta_L) conformation "forbidden" or filtered. T0547 575 :NERISN 1r0pA 1338 :SAIFST Number of specific fragments extracted= 1 number of extra gaps= 1 total=52695 2aplA expands to /projects/compbio/data/pdb/2apl.pdb.gz 2aplA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2aplA.575.134 read from T0547.t2k.many.frag # adding 2aplA to template set # found chain 2aplA in template set T0547 575 :NERISNSKL 2aplA 135 :TGTIVLLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52696 # 1wzdA.575.176 read from T0547.t2k.many.frag # found chain 1wzdA in training set Warning: unaligning (T0547)K582 (1wzdA)E184 because P (beta_P) conformation "forbidden" or filtered. T0547 575 :NERISNS 1wzdA 177 :REKLNNL T0547 583 :L 1wzdA 185 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=52698 # 1a8o.575.18 read from T0547.t2k.many.frag # found chain 1a8o in training set Warning: unaligning (T0547)K582 (1a8o)Q176 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1a8o 169 :YKTLRAE T0547 583 :L 1a8o 177 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=52700 # 1hlvA.576.105 read from T0547.t2k.many.frag # found chain 1hlvA in template set T0547 576 :ERISNSKLV 1hlvA 106 :RIAEELGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52701 # 1tfr.576.272 read from T0547.t2k.many.frag # found chain 1tfr in template set T0547 576 :ERISNSKLV 1tfr 273 :NYYNSYKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=52702 # 2d2mC.576.92 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 576 :ERISNSKLV 2d2mC 93 :HLSAQHQAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52703 # 1bh9B.576.58 read from T0547.t2k.many.frag # found chain 1bh9B in template set T0547 576 :ERISNSKLV 1bh9B 171 :DVCEKWGEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=52704 # 1ng6A.576.105 read from T0547.t2k.many.frag # found chain 1ng6A in training set T0547 576 :ERISNSKLV 1ng6A 106 :ETIAEVGAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52705 # 1f45B.576.117 read from T0547.t2k.many.frag # found chain 1f45B in template set T0547 576 :ERISNSKLV 1f45B 118 :TMNAKLLMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52706 # 2arcA.576.129 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 576 :ERISNSKLV 2arcA 136 :QIINAGQGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52707 # 1dk0A.576.152 read from T0547.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)K582 (1dk0A)G159 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1dk0A 153 :GILDDY T0547 583 :LV 1dk0A 160 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=52709 # 1h54A.576.279 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 576 :ERISNSKLV 1h54A 280 :QLSDKVAQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52710 # 2d2sA.576.206 read from T0547.t2k.many.frag # found chain 2d2sA in template set T0547 576 :ERISNSKLV 2d2sA 725 :KQIDGLKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52711 # 1kxu.576.266 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 576 :ERISNSKLV 1kxu 257 :NLVKKYEPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=52712 # 1qtnB.576.63 read from T0547.t2k.many.frag # found chain 1qtnB in training set T0547 576 :ERISNSKLV 1qtnB 448 :YEVSNKDDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52713 # 1pdo.576.118 read from T0547.t2k.many.frag # found chain 1pdo in training set T0547 576 :ERISNSKLV 1pdo 120 :ETGREGVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52714 1qrvA expands to /projects/compbio/data/pdb/1qrv.pdb.gz 1qrvA:# 1qrvA.576.39 read from T0547.t2k.many.frag # adding 1qrvA to template set # found chain 1qrvA in template set T0547 576 :ERISNSKLV 1qrvA 41 :ELWRAMKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52715 # 1vhtA.576.196 read from T0547.t2k.many.frag # found chain 1vhtA in training set T0547 576 :ERISNSKLV 1vhtA 195 :QLASQFVSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52716 # 1uehA.576.155 read from T0547.t2k.many.frag # found chain 1uehA in training set T0547 576 :ERISNSKLV 1uehA 156 :RQLAEKVQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52717 # 1ash.576.91 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 576 :ERISNSKLV 1ash 91 :ELLDRHARD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52718 # 1dzkA.576.133 read from T0547.t2k.many.frag # found chain 1dzkA in training set T0547 576 :ERISNSKLV 1dzkA 134 :EVTRENGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=52719 # 1yo3A.576.35 read from T0547.t2k.many.frag # found chain 1yo3A in training set T0547 576 :ERISNSKLV 1yo3A 17 :DCANQALQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52720 # 1ecrA.576.191 read from T0547.t2k.many.frag # found chain 1ecrA in template set T0547 576 :ERISNSKLV 1ecrA 192 :KSLKSPRSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52721 # 1a8o.576.19 read from T0547.t2k.many.frag # found chain 1a8o in training set Warning: unaligning (T0547)K582 (1a8o)Q176 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1a8o 170 :KTLRAE T0547 583 :LV 1a8o 177 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=52723 # 1z77A.576.133 read from T0547.t2k.many.frag # found chain 1z77A in template set T0547 576 :ERISNSKLV 1z77A 134 :EKLKDLDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52724 # 1yt3A.576.311 read from T0547.t2k.many.frag # found chain 1yt3A in training set T0547 576 :ERISNSKLV 1yt3A 312 :SLITDVSET Number of specific fragments extracted= 1 number of extra gaps= 0 total=52725 # 1vqoP.576.103 read from T0547.t2k.many.frag # found chain 1vqoP in template set T0547 576 :ERISNSKLV 1vqoP 103 :TKLRELRDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52726 # 1zpwX.576.50 read from T0547.t2k.many.frag # found chain 1zpwX in training set T0547 576 :ERISNSKLV 1zpwX 51 :RRARRLLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52727 # 2aplA.576.135 read from T0547.t2k.many.frag # found chain 2aplA in template set T0547 576 :ERISNSKLV 2aplA 136 :GTIVLLIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=52728 # 1p0yA.576.357 read from T0547.t2k.many.frag # found chain 1p0yA in template set T0547 576 :ERISNSKLV 1p0yA 402 :EACKSALAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52729 # 1vpbA.576.95 read from T0547.t2k.many.frag # found chain 1vpbA in training set T0547 576 :ERISNSKLV 1vpbA 84 :NGIDSTRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52730 # 1pinA.576.90 read from T0547.t2k.many.frag # found chain 1pinA in training set T0547 576 :ERISNSKLV 1pinA 91 :GYIQKIKSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52731 # 1b5l.576.128 read from T0547.t2k.many.frag # found chain 1b5l in template set T0547 576 :ERISNSKLV 1b5l 129 :DYLQEKGYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52732 # 1hlvA.577.106 read from T0547.t2k.many.frag # found chain 1hlvA in template set Warning: unaligning (T0547)K582 (1hlvA)G112 because T (delta_L) conformation "forbidden" or filtered. T0547 577 :RISNS 1hlvA 107 :IAEEL T0547 583 :LVN 1hlvA 113 :MDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=52734 # 1bh9B.577.59 read from T0547.t2k.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)K582 (1bh9B)G177 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNS 1bh9B 172 :VCEKW T0547 583 :LVN 1bh9B 178 :EMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=52736 # 2d2mC.577.93 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 577 :RISNSKLVN 2d2mC 94 :LSAQHQARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52737 # 1ng6A.577.106 read from T0547.t2k.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)S581 (1ng6A)V111 because G (3-10) conformation "forbidden" or filtered. T0547 577 :RISN 1ng6A 107 :TIAE T0547 582 :KLVN 1ng6A 112 :GASS Number of specific fragments extracted= 2 number of extra gaps= 1 total=52739 # 1tfr.577.273 read from T0547.t2k.many.frag # found chain 1tfr in template set T0547 577 :RISNSKLVN 1tfr 274 :YYNSYKLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=52740 # 1kxu.577.267 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 577 :RISNSKLVN 1kxu 258 :LVKKYEPPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52741 # 2arcA.577.130 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 577 :RISNSKLVN 2arcA 137 :IINAGQGEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52742 # 1f45B.577.118 read from T0547.t2k.many.frag # found chain 1f45B in template set T0547 577 :RISNSKLVN 1f45B 119 :MNAKLLMDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=52743 # 1dk0A.577.153 read from T0547.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)K582 (1dk0A)G159 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNS 1dk0A 154 :ILDDY T0547 583 :LVN 1dk0A 160 :LSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=52745 # 1vprA.577.174 read from T0547.t2k.many.frag # found chain 1vprA in training set Warning: unaligning (T0547)N585 (1vprA)G1048 because S (epsilon) conformation "forbidden" or filtered. T0547 577 :RISNSKLV 1vprA 1040 :FIKEAIKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=52746 # 1yo3A.577.36 read from T0547.t2k.many.frag # found chain 1yo3A in training set Warning: unaligning (T0547)N585 (1yo3A)Y26 because E (beta_S) conformation "forbidden" or filtered. T0547 577 :RISNSKLV 1yo3A 18 :CANQALQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=52747 # 1h54A.577.280 read from T0547.t2k.many.frag # found chain 1h54A in template set T0547 577 :RISNSKLVN 1h54A 281 :LSDKVAQSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52748 # 1uehA.577.156 read from T0547.t2k.many.frag # found chain 1uehA in training set T0547 577 :RISNSKLVN 1uehA 157 :QLAEKVQQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52749 # 1l6xB.577.7 read from T0547.t2k.many.frag # found chain 1l6xB in training set T0547 577 :RISNSKLVN 1l6xB 13 :RFYEALHDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=52750 # 1a8o.577.20 read from T0547.t2k.many.frag # found chain 1a8o in training set Warning: unaligning (T0547)K582 (1a8o)Q176 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNS 1a8o 171 :TLRAE T0547 583 :LVN 1a8o 177 :ASQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=52752 # 1vqoP.577.104 read from T0547.t2k.many.frag # found chain 1vqoP in template set T0547 577 :RISNSKLVN 1vqoP 104 :KLRELRDEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52753 # 1vhtA.577.197 read from T0547.t2k.many.frag # found chain 1vhtA in training set T0547 577 :RISNSKLVN 1vhtA 196 :LASQFVSQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52754 # 1dzkA.577.134 read from T0547.t2k.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)S581 (1dzkA)N139 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1dzkA)G140 because T (delta_L) conformation "forbidden" or filtered. T0547 577 :RISN 1dzkA 135 :VTRE T0547 583 :LVN 1dzkA 141 :IPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52756 # 1p0yA.577.358 read from T0547.t2k.many.frag # found chain 1p0yA in template set T0547 577 :RISNSKLVN 1p0yA 403 :ACKSALAGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52757 # 1qtnB.577.64 read from T0547.t2k.many.frag # found chain 1qtnB in training set T0547 577 :RISNSKLVN 1qtnB 449 :EVSNKDDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52758 # 2d2sA.577.207 read from T0547.t2k.many.frag # found chain 2d2sA in template set T0547 577 :RISNSKLVN 2d2sA 726 :QIDGLKAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52759 # 1c3cA.577.358 read from T0547.t2k.many.frag # found chain 1c3cA in training set T0547 577 :RISNSKLVN 1c3cA 360 :KLIEKGLTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52760 # 1k2xA.577.36 read from T0547.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0547)N585 (1k2xA)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 577 :RISNSKLV 1k2xA 38 :TGQKMLEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=52761 # 1t4bA.577.184 read from T0547.t2k.many.frag # found chain 1t4bA in training set T0547 577 :RISNSKLVN 1t4bA 185 :HVADELATP Number of specific fragments extracted= 1 number of extra gaps= 0 total=52762 # 1pdo.577.119 read from T0547.t2k.many.frag # found chain 1pdo in training set T0547 577 :RISNSKLVN 1pdo 121 :TGREGVKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52763 # 1ash.577.92 read from T0547.t2k.many.frag # found chain 1ash in template set T0547 577 :RISNSKLVN 1ash 92 :LLDRHARDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=52764 # 2axtB.577.286 read from T0547.t2k.many.frag # found chain 2axtB in template set Warning: unaligning (T0547)N585 (2axtB)G295 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNSKLV 2axtB 287 :RVQASLAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=52765 # 2aplA.577.136 read from T0547.t2k.many.frag # found chain 2aplA in template set T0547 577 :RISNSKLVN 2aplA 137 :TIVLLIESN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52766 # 1eswA.577.416 read from T0547.t2k.many.frag # found chain 1eswA in template set Warning: unaligning (T0547)N585 (1eswA)F425 because Y (epsilon') conformation "forbidden" or filtered. T0547 577 :RISNSKLV 1eswA 417 :YLADWGIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=52767 # 1otkA.577.140 read from T0547.t2k.many.frag # found chain 1otkA in template set T0547 577 :RISNSKLVN 1otkA 141 :WLERLGNGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52768 # 2d2mC.578.94 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 578 :ISNSKLVND 2d2mC 95 :SAQHQARAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52769 # 1bh9B.578.60 read from T0547.t2k.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)K582 (1bh9B)G177 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1bh9B)P180 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1bh9B)P181 because C (cis) conformation "forbidden" or filtered. T0547 578 :ISNS 1bh9B 173 :CEKW T0547 583 :LV 1bh9B 178 :EM Number of specific fragments extracted= 2 number of extra gaps= 2 total=52771 # 1ng6A.578.107 read from T0547.t2k.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)V584 (1ng6A)S114 because G (3-10) conformation "forbidden" or filtered. T0547 578 :ISNSKL 1ng6A 108 :IAEVGA T0547 585 :ND 1ng6A 115 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=52773 # 1hlvA.578.107 read from T0547.t2k.many.frag # found chain 1hlvA in template set Warning: unaligning (T0547)N585 (1hlvA)D115 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1hlvA)F116 because P (beta_P) conformation "forbidden" or filtered. T0547 578 :ISNSKLV 1hlvA 108 :AEELGMD Number of specific fragments extracted= 1 number of extra gaps= 1 total=52774 # 1vprA.578.175 read from T0547.t2k.many.frag # found chain 1vprA in training set Warning: unaligning (T0547)V584 (1vprA)S1047 because G (3-10) conformation "forbidden" or filtered. T0547 578 :ISNSKL 1vprA 1041 :IKEAIK T0547 585 :ND 1vprA 1048 :GM Number of specific fragments extracted= 2 number of extra gaps= 1 total=52776 # 2arcA.578.131 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 578 :ISNSKLVND 2arcA 138 :INAGQGEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52777 # 1l6xB.578.8 read from T0547.t2k.many.frag # found chain 1l6xB in training set T0547 578 :ISNSKLVND 1l6xB 14 :FYEALHDPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52778 # 1t4bA.578.185 read from T0547.t2k.many.frag # found chain 1t4bA in training set T0547 578 :ISNSKLVND 1t4bA 186 :VADELATPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52779 # 1f45B.578.119 read from T0547.t2k.many.frag # found chain 1f45B in template set Warning: unaligning (T0547)D586 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1f45B)R129 T0547 578 :ISNSKLVN 1f45B 120 :NAKLLMDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=52780 # 1kxu.578.268 read from T0547.t2k.many.frag # found chain 1kxu in template set Warning: unaligning (T0547)N580 (1kxu)K261 because G (3-10) conformation "forbidden" or filtered. T0547 578 :IS 1kxu 259 :VK T0547 581 :SKLVND 1kxu 262 :YEPPRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=52782 # 1tfr.578.274 read from T0547.t2k.many.frag # found chain 1tfr in template set T0547 578 :ISNSKLVND 1tfr 275 :YNSYKLPPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52783 # 1vqoP.578.105 read from T0547.t2k.many.frag # found chain 1vqoP in template set T0547 578 :ISNSKLVND 1vqoP 105 :LRELRDEGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52784 # 1c3cA.578.359 read from T0547.t2k.many.frag # found chain 1c3cA in training set Warning: unaligning (T0547)K582 (1c3cA)G365 because T (delta_L) conformation "forbidden" or filtered. T0547 578 :ISNS 1c3cA 361 :LIEK T0547 583 :LVND 1c3cA 366 :LTRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=52786 # 1yo3A.578.37 read from T0547.t2k.many.frag # found chain 1yo3A in training set T0547 578 :ISNSKLVND 1yo3A 19 :ANQALQKYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52787 # 1k2xA.578.37 read from T0547.t2k.many.frag # found chain 1k2xA in training set T0547 578 :ISNSKLVND 1k2xA 39 :GQKMLEAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52788 # 1dk0A.578.154 read from T0547.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)K582 (1dk0A)G159 because L (left) conformation "forbidden" or filtered. T0547 578 :ISNS 1dk0A 155 :LDDY T0547 583 :LVND 1dk0A 160 :LSVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=52790 # 1uehA.578.157 read from T0547.t2k.many.frag # found chain 1uehA in training set T0547 578 :ISNSKLVND 1uehA 158 :LAEKVQQGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=52791 # 2axtB.578.287 read from T0547.t2k.many.frag # found chain 2axtB in template set T0547 578 :ISNSKLVND 2axtB 288 :VQASLASGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52792 # 1pinA.578.92 read from T0547.t2k.many.frag # found chain 1pinA in training set T0547 578 :ISNSKLVND 1pinA 93 :IQKIKSGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52793 # 1p0yA.578.359 read from T0547.t2k.many.frag # found chain 1p0yA in template set T0547 578 :ISNSKLVND 1p0yA 404 :CKSALAGYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=52794 # 1vhtA.578.198 read from T0547.t2k.many.frag # found chain 1vhtA in training set T0547 578 :ISNSKLVND 1vhtA 197 :ASQFVSQEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52795 1di1A expands to /projects/compbio/data/pdb/1di1.pdb.gz 1di1A:# 1di1A.578.263 read from T0547.t2k.many.frag # adding 1di1A to template set # found chain 1di1A in template set T0547 578 :ISNSKLVND 1di1A 302 :VAEKIASPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52796 # 1u8vA.578.314 read from T0547.t2k.many.frag # found chain 1u8vA in training set Warning: unaligning (T0547)K582 (1u8vA)G319 because T (delta_L) conformation "forbidden" or filtered. T0547 578 :ISNS 1u8vA 315 :ADYN T0547 583 :LVND 1u8vA 320 :AQKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=52798 # 1otkA.578.141 read from T0547.t2k.many.frag # found chain 1otkA in template set T0547 578 :ISNSKLVND 1otkA 142 :LERLGNGTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52799 1a32 expands to /projects/compbio/data/pdb/1a32.pdb.gz 1a32:Warning: there is no chain 1a32 will retry with 1a32A # 1a32.578.65 read from T0547.t2k.many.frag # adding 1a32 to template set # found chain 1a32 in template set T0547 578 :ISNSKLVND 1a32 66 :LAYLRNKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52800 # 1ash.578.93 read from T0547.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0547)N585 (1ash)H100 because L (left) conformation "forbidden" or filtered. T0547 578 :ISNSKLV 1ash 93 :LDRHARD T0547 586 :D 1ash 101 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=52802 # 1tfe.578.71 read from T0547.t2k.many.frag # found chain 1tfe in training set Warning: unaligning (T0547)V584 (1tfe)E132 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1tfe)G133 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1tfe)K134 because P (beta_P) conformation "forbidden" or filtered. T0547 578 :ISNSKL 1tfe 126 :IQAALN Number of specific fragments extracted= 1 number of extra gaps= 1 total=52803 # 1wpbA.578.151 read from T0547.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0547)K582 because of BadResidue code BAD_PEPTIDE in next template residue (1wpbA)R155 Warning: unaligning (T0547)L583 because of BadResidue code BAD_PEPTIDE at template residue (1wpbA)R155 Warning: unaligning (T0547)D586 (1wpbA)H158 because L (left) conformation "forbidden" or filtered. T0547 578 :ISNS 1wpbA 150 :WHAC T0547 584 :VN 1wpbA 156 :QY Number of specific fragments extracted= 2 number of extra gaps= 2 total=52805 # 2aplA.578.137 read from T0547.t2k.many.frag # found chain 2aplA in template set T0547 578 :ISNSKLVND 2aplA 138 :IVLLIESNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=52806 # 1a8o.578.21 read from T0547.t2k.many.frag # found chain 1a8o in training set Warning: unaligning (T0547)K582 (1a8o)Q176 because L (left) conformation "forbidden" or filtered. T0547 578 :ISNS 1a8o 172 :LRAE T0547 583 :LVND 1a8o 177 :ASQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52808 # 1vprA.579.176 read from T0547.t2k.many.frag # found chain 1vprA in training set Warning: unaligning (T0547)N585 (1vprA)G1048 because S (epsilon) conformation "forbidden" or filtered. T0547 579 :SNSKLV 1vprA 1042 :KEAIKS T0547 586 :DK 1vprA 1049 :ML Number of specific fragments extracted= 2 number of extra gaps= 1 total=52810 # 2d2mC.579.95 read from T0547.t2k.many.frag # found chain 2d2mC in template set Warning: unaligning (T0547)N585 (2d2mC)A102 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNSKLV 2d2mC 96 :AQHQAR T0547 586 :DK 2d2mC 103 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=52812 # 1l6xB.579.9 read from T0547.t2k.many.frag # found chain 1l6xB in training set T0547 579 :SNSKLVNDK 1l6xB 15 :YEALHDPNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52813 # 1t4bA.579.186 read from T0547.t2k.many.frag # found chain 1t4bA in training set T0547 579 :SNSKLVNDK 1t4bA 187 :ADELATPSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52814 # 2arcA.579.132 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 579 :SNSKLVNDK 2arcA 139 :NAGQGEGRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52815 # 1vqoP.579.106 read from T0547.t2k.many.frag # found chain 1vqoP in template set T0547 579 :SNSKLVNDK 1vqoP 106 :RELRDEGTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52816 # 1bh9B.579.61 read from T0547.t2k.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)K582 (1bh9B)G177 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1bh9B)P181 because C (cis) conformation "forbidden" or filtered. T0547 579 :SNS 1bh9B 174 :EKW T0547 583 :LVN 1bh9B 178 :EMP T0547 587 :K 1bh9B 182 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=52819 # 1ng6A.579.108 read from T0547.t2k.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)K582 (1ng6A)G112 because L (left) conformation "forbidden" or filtered. T0547 579 :SNS 1ng6A 109 :AEV T0547 583 :LVNDK 1ng6A 113 :ASSKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=52821 # 1k2xA.579.38 read from T0547.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0547)V584 (1k2xA)A45 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1k2xA)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 579 :SNSKL 1k2xA 40 :QKMLE T0547 586 :DK 1k2xA 47 :ES Number of specific fragments extracted= 2 number of extra gaps= 1 total=52823 # 1hlvA.579.108 read from T0547.t2k.many.frag # found chain 1hlvA in template set T0547 579 :SNSKLVNDK 1hlvA 109 :EELGMDDFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52824 # 1yo3A.579.38 read from T0547.t2k.many.frag # found chain 1yo3A in training set T0547 579 :SNSKLVNDK 1yo3A 20 :NQALQKYNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52825 # 1kxu.579.269 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 579 :SNSKLVNDK 1kxu 260 :KKYEPPRSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52826 # 1otkA.579.142 read from T0547.t2k.many.frag # found chain 1otkA in template set T0547 579 :SNSKLVNDK 1otkA 143 :ERLGNGTDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52827 # 1a32.579.66 read from T0547.t2k.many.frag # found chain 1a32 in template set T0547 579 :SNSKLVNDK 1a32 67 :AYLRNKDVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52828 # 1f45B.579.120 read from T0547.t2k.many.frag # found chain 1f45B in template set Warning: unaligning (T0547)D586 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1f45B)R129 Warning: unaligning (T0547)K587 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1f45B)R129 T0547 579 :SNSKLVN 1f45B 121 :AKLLMDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=52829 # 1kyqA.579.182 read from T0547.t2k.many.frag # found chain 1kyqA in template set T0547 579 :SNSKLVNDK 1kyqA 183 :NLFTQMGDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=52830 # 1di1A.579.264 read from T0547.t2k.many.frag # found chain 1di1A in template set T0547 579 :SNSKLVNDK 1di1A 303 :AEKIASPDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52831 # 1c3cA.579.360 read from T0547.t2k.many.frag # found chain 1c3cA in training set Warning: unaligning (T0547)K582 (1c3cA)G365 because T (delta_L) conformation "forbidden" or filtered. T0547 579 :SNS 1c3cA 362 :IEK T0547 583 :LVNDK 1c3cA 366 :LTRKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52833 # 1tfr.579.275 read from T0547.t2k.many.frag # found chain 1tfr in template set Warning: unaligning (T0547)N585 (1tfr)P282 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNSKLV 1tfr 276 :NSYKLP T0547 586 :DK 1tfr 283 :RG Number of specific fragments extracted= 2 number of extra gaps= 1 total=52835 # 1uddA.579.179 read from T0547.t2k.many.frag # found chain 1uddA in template set T0547 579 :SNSKLVNDK 1uddA 180 :KIIDSSGHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52836 # 1z77A.579.136 read from T0547.t2k.many.frag # found chain 1z77A in template set Warning: unaligning (T0547)K587 (1z77A)V145 because E (beta_S) conformation "forbidden" or filtered. T0547 579 :SNSKLVND 1z77A 137 :KDLDLAED Number of specific fragments extracted= 1 number of extra gaps= 1 total=52837 # 1wpbA.579.152 read from T0547.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0547)K582 because of BadResidue code BAD_PEPTIDE in next template residue (1wpbA)R155 Warning: unaligning (T0547)L583 because of BadResidue code BAD_PEPTIDE at template residue (1wpbA)R155 Warning: unaligning (T0547)V584 (1wpbA)Q156 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1wpbA)H158 because L (left) conformation "forbidden" or filtered. T0547 579 :SNS 1wpbA 151 :HAC T0547 585 :N 1wpbA 157 :Y T0547 587 :K 1wpbA 159 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=52840 # 1u8vA.579.315 read from T0547.t2k.many.frag # found chain 1u8vA in training set Warning: unaligning (T0547)D586 (1u8vA)A323 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNSKLVN 1u8vA 316 :DYNGAQK T0547 587 :K 1u8vA 324 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=52842 # 1pinA.579.93 read from T0547.t2k.many.frag # found chain 1pinA in training set T0547 579 :SNSKLVNDK 1pinA 94 :QKIKSGEED Number of specific fragments extracted= 1 number of extra gaps= 0 total=52843 # 2a6sA.579.13 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 579 :SNSKLVNDK 2a6sA 14 :LYWQETDKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52844 # 1dk0A.579.155 read from T0547.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)K587 (1dk0A)S164 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNSKLVND 1dk0A 156 :DDYGLSVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=52845 1y71A expands to /projects/compbio/data/pdb/1y71.pdb.gz 1y71A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1y71A.579.103 read from T0547.t2k.many.frag # adding 1y71A to template set # found chain 1y71A in template set Warning: unaligning (T0547)K582 (1y71A)S104 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNS 1y71A 101 :NSF T0547 583 :LVNDK 1y71A 105 :EDDSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=52847 # 1tfe.579.72 read from T0547.t2k.many.frag # found chain 1tfe in training set T0547 579 :SNSKLVNDK 1tfe 127 :QAALNEGKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=52848 # 2axtB.579.288 read from T0547.t2k.many.frag # found chain 2axtB in template set Warning: unaligning (T0547)K587 (2axtB)T297 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNSKLVND 2axtB 289 :QASLASGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=52849 # 1utg.579.42 read from T0547.t2k.many.frag # found chain 1utg in training set Warning: unaligning (T0547)N585 (1utg)P49 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNSKLV 1utg 43 :KVLDSL T0547 586 :DK 1utg 50 :QT Number of specific fragments extracted= 2 number of extra gaps= 1 total=52851 # 1t4bA.580.187 read from T0547.t2k.many.frag # found chain 1t4bA in training set T0547 580 :NSKLVNDKQ 1t4bA 188 :DELATPSSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52852 # 1vprA.580.177 read from T0547.t2k.many.frag # found chain 1vprA in training set Warning: unaligning (T0547)N585 (1vprA)G1048 because S (epsilon) conformation "forbidden" or filtered. T0547 580 :NSKLV 1vprA 1043 :EAIKS T0547 586 :DKQ 1vprA 1049 :MLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=52854 # 1l6xB.580.10 read from T0547.t2k.many.frag # found chain 1l6xB in training set Warning: unaligning (T0547)K587 (1l6xB)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 580 :NSKLVND 1l6xB 16 :EALHDPN T0547 588 :Q 1l6xB 24 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=52856 # 2arcA.580.133 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 580 :NSKLVNDKQ 2arcA 140 :AGQGEGRYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52857 # 1vqoP.580.107 read from T0547.t2k.many.frag # found chain 1vqoP in template set T0547 580 :NSKLVNDKQ 1vqoP 107 :ELRDEGTLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52858 # 2d2mC.580.96 read from T0547.t2k.many.frag # found chain 2d2mC in template set Warning: unaligning (T0547)N585 (2d2mC)A102 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K587 (2d2mC)V104 because P (beta_P) conformation "forbidden" or filtered. T0547 580 :NSKLV 2d2mC 97 :QHQAR T0547 586 :D 2d2mC 103 :G T0547 588 :Q 2d2mC 105 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=52861 # 1c3cA.580.361 read from T0547.t2k.many.frag # found chain 1c3cA in training set T0547 580 :NSKLVNDKQ 1c3cA 363 :EKGLTRKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52862 # 1kyqA.580.183 read from T0547.t2k.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)Q588 (1kyqA)A192 because L (left) conformation "forbidden" or filtered. T0547 580 :NSKLVNDK 1kyqA 184 :LFTQMGDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=52863 # 1yo3A.580.39 read from T0547.t2k.many.frag # found chain 1yo3A in training set T0547 580 :NSKLVNDKQ 1yo3A 21 :QALQKYNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52864 # 1otkA.580.143 read from T0547.t2k.many.frag # found chain 1otkA in template set T0547 580 :NSKLVNDKQ 1otkA 144 :RLGNGTDVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=52865 # 1a32.580.67 read from T0547.t2k.many.frag # found chain 1a32 in template set T0547 580 :NSKLVNDKQ 1a32 68 :YLRNKDVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52866 # 1bh9B.580.62 read from T0547.t2k.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)D586 (1bh9B)P181 because C (cis) conformation "forbidden" or filtered. T0547 580 :NSKLVN 1bh9B 175 :KWGEMP T0547 587 :KQ 1bh9B 182 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=52868 # 1z77A.580.137 read from T0547.t2k.many.frag # found chain 1z77A in template set Warning: unaligning (T0547)S581 (1z77A)L139 because P (beta_P) conformation "forbidden" or filtered. T0547 580 :N 1z77A 138 :D T0547 582 :KLVNDKQ 1z77A 140 :DLAEDVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=52870 # 1kxu.580.270 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 580 :NSKLVNDKQ 1kxu 261 :KYEPPRSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52871 # 1ng6A.580.109 read from T0547.t2k.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)K582 (1ng6A)G112 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1ng6A)S115 because E (beta_S) conformation "forbidden" or filtered. T0547 580 :NS 1ng6A 110 :EV T0547 583 :LV 1ng6A 113 :AS T0547 586 :DKQ 1ng6A 116 :KAD Number of specific fragments extracted= 3 number of extra gaps= 2 total=52874 # 1di1A.580.265 read from T0547.t2k.many.frag # found chain 1di1A in template set T0547 580 :NSKLVNDKQ 1di1A 304 :EKIASPDGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=52875 # 1k2xA.580.39 read from T0547.t2k.many.frag # found chain 1k2xA in training set T0547 580 :NSKLVNDKQ 1k2xA 41 :KMLEAGESA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52876 # 1utg.580.43 read from T0547.t2k.many.frag # found chain 1utg in training set T0547 580 :NSKLVNDKQ 1utg 44 :VLDSLPQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52877 # 2a6sA.580.14 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 580 :NSKLVNDKQ 2a6sA 15 :YWQETDKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=52878 # 1u8vA.580.316 read from T0547.t2k.many.frag # found chain 1u8vA in training set Warning: unaligning (T0547)K582 (1u8vA)G319 because T (delta_L) conformation "forbidden" or filtered. T0547 580 :NS 1u8vA 317 :YN T0547 583 :LVNDKQ 1u8vA 320 :AQKASH Number of specific fragments extracted= 2 number of extra gaps= 1 total=52880 # 1y71A.580.104 read from T0547.t2k.many.frag # found chain 1y71A in template set Warning: unaligning (T0547)L583 (1y71A)E105 because T (delta_L) conformation "forbidden" or filtered. T0547 580 :NSK 1y71A 102 :SFS T0547 584 :VNDKQ 1y71A 106 :DDSPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=52882 # 1ojrA.580.243 read from T0547.t2k.many.frag # found chain 1ojrA in training set Warning: unaligning (T0547)S581 (1ojrA)G245 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1ojrA)G246 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1ojrA)Q249 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1ojrA)T250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K587 (1ojrA)I251 because P (beta_P) conformation "forbidden" or filtered. T0547 580 :N 1ojrA 244 :M T0547 583 :LV 1ojrA 247 :MK T0547 588 :Q 1ojrA 252 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=52885 # 1wpbA.580.153 read from T0547.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0547)K582 because of BadResidue code BAD_PEPTIDE in next template residue (1wpbA)R155 Warning: unaligning (T0547)L583 because of BadResidue code BAD_PEPTIDE at template residue (1wpbA)R155 Warning: unaligning (T0547)V584 (1wpbA)Q156 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1wpbA)H158 because L (left) conformation "forbidden" or filtered. T0547 580 :NS 1wpbA 152 :AC T0547 585 :N 1wpbA 157 :Y T0547 587 :KQ 1wpbA 159 :LS Number of specific fragments extracted= 3 number of extra gaps= 2 total=52888 # 1uddA.580.180 read from T0547.t2k.many.frag # found chain 1uddA in template set T0547 580 :NSKLVNDKQ 1uddA 181 :IIDSSGHSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52889 # 1r9lA.580.287 read from T0547.t2k.many.frag # found chain 1r9lA in training set T0547 580 :NSKLVNDKQ 1r9lA 288 :GWIKAHQQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=52890 # 1hlvA.580.109 read from T0547.t2k.many.frag # found chain 1hlvA in template set Warning: unaligning (T0547)K582 (1hlvA)G112 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K587 (1hlvA)T117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q588 (1hlvA)A118 because L (left) conformation "forbidden" or filtered. T0547 580 :NS 1hlvA 110 :EL T0547 583 :LVND 1hlvA 113 :MDDF Number of specific fragments extracted= 2 number of extra gaps= 2 total=52892 # 1f45B.580.121 read from T0547.t2k.many.frag # found chain 1f45B in template set Warning: unaligning (T0547)D586 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1f45B)R129 Warning: unaligning (T0547)K587 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1f45B)R129 T0547 580 :NSKLVN 1f45B 122 :KLLMDP T0547 588 :Q 1f45B 130 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=52894 1xrxA expands to /projects/compbio/data/pdb/1xrx.pdb.gz 1xrxA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 26, because occupancy 0.500 <= existing 0.500 in 1xrxA Skipped atom 28, because occupancy 0.500 <= existing 0.500 in 1xrxA Skipped atom 30, because occupancy 0.500 <= existing 0.500 in 1xrxA Skipped atom 32, because occupancy 0.500 <= existing 0.500 in 1xrxA Skipped atom 34, because occupancy 0.500 <= existing 0.500 in 1xrxA Skipped atom 36, because occupancy 0.500 <= existing 0.500 in 1xrxA Skipped atom 38, because occupancy 0.500 <= existing 0.500 in 1xrxA Skipped atom 40, because occupancy 0.500 <= existing 0.500 in 1xrxA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xrxA.580.15 read from T0547.t2k.many.frag # adding 1xrxA to template set # found chain 1xrxA in template set Warning: unaligning (T0547)D586 (1xrxA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 580 :NSKLVN 1xrxA 16 :SHTKHI T0547 587 :KQ 1xrxA 23 :ES Number of specific fragments extracted= 2 number of extra gaps= 1 total=52896 # 1dk0A.580.156 read from T0547.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)K582 (1dk0A)G159 because L (left) conformation "forbidden" or filtered. T0547 580 :NS 1dk0A 157 :DY T0547 583 :LVNDKQ 1dk0A 160 :LSVNST Number of specific fragments extracted= 2 number of extra gaps= 1 total=52898 # 1ho8A.580.409 read from T0547.t2k.many.frag # found chain 1ho8A in template set Warning: unaligning (T0547)K582 (1ho8A)D410 because L (left) conformation "forbidden" or filtered. T0547 580 :NS 1ho8A 408 :NG T0547 583 :LVNDKQ 1ho8A 411 :VNAKQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52900 # 1t4bA.581.188 read from T0547.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)K587 (1t4bA)S195 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :SKLVND 1t4bA 189 :ELATPS T0547 588 :QK 1t4bA 196 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=52902 # 1l6xB.581.11 read from T0547.t2k.many.frag # found chain 1l6xB in training set T0547 581 :SKLVNDKQK 1l6xB 17 :ALHDPNLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52903 # 1vprA.581.178 read from T0547.t2k.many.frag # found chain 1vprA in training set Warning: unaligning (T0547)K587 (1vprA)L1050 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :SKLVND 1vprA 1044 :AIKSGM T0547 588 :QK 1vprA 1051 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=52905 # 1vqoP.581.108 read from T0547.t2k.many.frag # found chain 1vqoP in template set Warning: unaligning (T0547)N585 (1vqoP)G112 because T (delta_L) conformation "forbidden" or filtered. T0547 581 :SKLV 1vqoP 108 :LRDE T0547 586 :DKQK 1vqoP 113 :TLSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=52907 # 2arcA.581.134 read from T0547.t2k.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)N585 (2arcA)G145 because S (epsilon) conformation "forbidden" or filtered. T0547 581 :SKLV 2arcA 141 :GQGE T0547 586 :DKQK 2arcA 146 :RYSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52909 # 1kxu.581.271 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 581 :SKLVNDKQK 1kxu 262 :YEPPRSEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52910 # 1c3cA.581.362 read from T0547.t2k.many.frag # found chain 1c3cA in training set T0547 581 :SKLVNDKQK 1c3cA 364 :KGLTRKEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52911 # 1otkA.581.144 read from T0547.t2k.many.frag # found chain 1otkA in template set T0547 581 :SKLVNDKQK 1otkA 145 :LGNGTDVSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=52912 # 1kyqA.581.184 read from T0547.t2k.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)N585 (1kyqA)G189 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q588 (1kyqA)A192 because L (left) conformation "forbidden" or filtered. T0547 581 :SKLV 1kyqA 185 :FTQM T0547 586 :DK 1kyqA 190 :DL T0547 589 :K 1kyqA 193 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=52915 # 1utg.581.44 read from T0547.t2k.many.frag # found chain 1utg in training set T0547 581 :SKLVNDKQK 1utg 45 :LDSLPQTTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52916 # 1a32.581.68 read from T0547.t2k.many.frag # found chain 1a32 in template set T0547 581 :SKLVNDKQK 1a32 69 :LRNKDVARY Number of specific fragments extracted= 1 number of extra gaps= 0 total=52917 # 1bh9B.581.63 read from T0547.t2k.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)K582 (1bh9B)G177 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1bh9B)P181 because C (cis) conformation "forbidden" or filtered. T0547 581 :S 1bh9B 176 :W T0547 583 :LVN 1bh9B 178 :EMP T0547 587 :KQK 1bh9B 182 :LQP Number of specific fragments extracted= 3 number of extra gaps= 2 total=52920 # 1yo3A.581.40 read from T0547.t2k.many.frag # found chain 1yo3A in training set Warning: unaligning (T0547)K587 (1yo3A)V28 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :SKLVND 1yo3A 22 :ALQKYN T0547 588 :QK 1yo3A 29 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=52922 # 1z77A.581.138 read from T0547.t2k.many.frag # found chain 1z77A in template set T0547 581 :SKLVNDKQK 1z77A 139 :LDLAEDVTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52923 # 2a6sA.581.15 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 581 :SKLVNDKQK 2a6sA 16 :WQETDKRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52924 # 2d2mC.581.97 read from T0547.t2k.many.frag # found chain 2d2mC in template set T0547 581 :SKLVNDKQK 2d2mC 98 :HQARAGVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52925 # 1y71A.581.105 read from T0547.t2k.many.frag # found chain 1y71A in template set Warning: unaligning (T0547)L583 (1y71A)E105 because T (delta_L) conformation "forbidden" or filtered. T0547 581 :SK 1y71A 103 :FS T0547 584 :VNDKQK 1y71A 106 :DDSPFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=52927 # 1wpbA.581.154 read from T0547.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0547)K582 because of BadResidue code BAD_PEPTIDE in next template residue (1wpbA)R155 Warning: unaligning (T0547)L583 because of BadResidue code BAD_PEPTIDE at template residue (1wpbA)R155 Warning: unaligning (T0547)N585 (1wpbA)Y157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1wpbA)H158 because L (left) conformation "forbidden" or filtered. T0547 581 :S 1wpbA 153 :C T0547 584 :V 1wpbA 156 :Q T0547 587 :KQK 1wpbA 159 :LSA Number of specific fragments extracted= 3 number of extra gaps= 2 total=52930 # 1di1A.581.266 read from T0547.t2k.many.frag # found chain 1di1A in template set Warning: unaligning (T0547)K587 (1di1A)G311 because S (epsilon) conformation "forbidden" or filtered. T0547 581 :SKLVND 1di1A 305 :KIASPD T0547 588 :QK 1di1A 312 :CS Number of specific fragments extracted= 2 number of extra gaps= 1 total=52932 # 1k2xA.581.40 read from T0547.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0547)N585 (1k2xA)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 581 :SKLV 1k2xA 42 :MLEA T0547 586 :DKQK 1k2xA 47 :ESAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=52934 1wteA expands to /projects/compbio/data/pdb/1wte.pdb.gz 1wteA:# 1wteA.581.227 read from T0547.t2k.many.frag # adding 1wteA to template set # found chain 1wteA in template set Warning: unaligning (T0547)L583 (1wteA)D230 because L (left) conformation "forbidden" or filtered. T0547 581 :SK 1wteA 228 :EA T0547 584 :VNDKQK 1wteA 231 :IKEKNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=52936 # 1ng6A.581.110 read from T0547.t2k.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)K582 (1ng6A)G112 because L (left) conformation "forbidden" or filtered. T0547 581 :S 1ng6A 111 :V T0547 583 :LVNDKQK 1ng6A 113 :ASSKADM Number of specific fragments extracted= 2 number of extra gaps= 1 total=52938 # 1xrxA.581.16 read from T0547.t2k.many.frag # found chain 1xrxA in template set Warning: unaligning (T0547)D586 (1xrxA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 581 :SKLVN 1xrxA 17 :HTKHI T0547 587 :KQK 1xrxA 23 :ESA Number of specific fragments extracted= 2 number of extra gaps= 1 total=52940 # 1u8vA.581.317 read from T0547.t2k.many.frag # found chain 1u8vA in training set T0547 581 :SKLVNDKQK 1u8vA 318 :NGAQKASHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=52941 # 1ojrA.581.244 read from T0547.t2k.many.frag # found chain 1ojrA in training set Warning: unaligning (T0547)N585 (1ojrA)Q249 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1ojrA)T250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K587 (1ojrA)I251 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :SKLV 1ojrA 245 :GGMK T0547 588 :QK 1ojrA 252 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=52943 # 1r9lA.581.288 read from T0547.t2k.many.frag # found chain 1r9lA in training set T0547 581 :SKLVNDKQK 1r9lA 289 :WIKAHQQQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=52944 # 1ho8A.581.410 read from T0547.t2k.many.frag # found chain 1ho8A in template set Warning: unaligning (T0547)K582 (1ho8A)D410 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1ho8A)A413 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :S 1ho8A 409 :G T0547 583 :LV 1ho8A 411 :VN T0547 586 :DKQK 1ho8A 414 :KQEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=52947 # 2d1eA.581.193 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 581 :SKLVNDKQK 2d1eA 194 :AEPLSEAQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=52948 # 1ecrA.581.196 read from T0547.t2k.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)D586 (1ecrA)P202 because C (cis) conformation "forbidden" or filtered. T0547 581 :SKLVN 1ecrA 197 :PRSVA T0547 587 :KQK 1ecrA 203 :WTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=52950 # 1dk0A.581.157 read from T0547.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)K582 (1dk0A)G159 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K587 (1dk0A)S164 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :S 1dk0A 158 :Y T0547 583 :LVND 1dk0A 160 :LSVN T0547 588 :QK 1dk0A 165 :TF Number of specific fragments extracted= 3 number of extra gaps= 2 total=52953 # 1t4bA.582.189 read from T0547.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)K587 (1t4bA)S195 because P (beta_P) conformation "forbidden" or filtered. T0547 582 :KLVND 1t4bA 190 :LATPS T0547 588 :QKK 1t4bA 196 :AIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=52955 # 1l6xB.582.12 read from T0547.t2k.many.frag # found chain 1l6xB in training set T0547 582 :KLVNDKQKK 1l6xB 18 :LHDPNLNEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52956 # 1vqoP.582.109 read from T0547.t2k.many.frag # found chain 1vqoP in template set Warning: unaligning (T0547)K587 (1vqoP)L114 because E (beta_S) conformation "forbidden" or filtered. T0547 582 :KLVND 1vqoP 109 :RDEGT T0547 588 :QKK 1vqoP 115 :SSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=52958 # 1vprA.582.179 read from T0547.t2k.many.frag # found chain 1vprA in training set T0547 582 :KLVNDKQKK 1vprA 1045 :IKSGMLGAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52959 # 1kxu.582.272 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 582 :KLVNDKQKK 1kxu 263 :EPPRSEEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=52960 # 2arcA.582.135 read from T0547.t2k.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)N585 (2arcA)G145 because S (epsilon) conformation "forbidden" or filtered. T0547 582 :KLV 2arcA 142 :QGE T0547 586 :DKQKK 2arcA 146 :RYSEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=52962 # 1utg.582.45 read from T0547.t2k.many.frag # found chain 1utg in training set T0547 582 :KLVNDKQKK 1utg 46 :DSLPQTTRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52963 # 1otkA.582.145 read from T0547.t2k.many.frag # found chain 1otkA in template set Warning: unaligning (T0547)N585 (1otkA)T149 because P (beta_P) conformation "forbidden" or filtered. T0547 582 :KLV 1otkA 146 :GNG T0547 586 :DKQKK 1otkA 150 :DVSGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=52965 # 1c3cA.582.363 read from T0547.t2k.many.frag # found chain 1c3cA in training set Warning: unaligning (T0547)K582 (1c3cA)G365 because T (delta_L) conformation "forbidden" or filtered. T0547 583 :LVNDKQKK 1c3cA 366 :LTRKEAYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=52966 # 1kyqA.582.185 read from T0547.t2k.many.frag # found chain 1kyqA in template set T0547 582 :KLVNDKQKK 1kyqA 186 :TQMGDLALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52967 # 1wteA.582.228 read from T0547.t2k.many.frag # found chain 1wteA in template set T0547 582 :KLVNDKQKK 1wteA 229 :ADIKEKNKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52968 # 1bh9B.582.64 read from T0547.t2k.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)D586 (1bh9B)P181 because C (cis) conformation "forbidden" or filtered. T0547 582 :KLVN 1bh9B 177 :GEMP T0547 587 :KQKK 1bh9B 182 :LQPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=52970 # 2a6sA.582.16 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 582 :KLVNDKQKK 2a6sA 17 :QETDKRIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=52971 # 1a32.582.69 read from T0547.t2k.many.frag # found chain 1a32 in template set T0547 582 :KLVNDKQKK 1a32 70 :RNKDVARYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=52972 # 1z77A.582.139 read from T0547.t2k.many.frag # found chain 1z77A in template set T0547 582 :KLVNDKQKK 1z77A 140 :DLAEDVTEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52973 # 1y71A.582.106 read from T0547.t2k.many.frag # found chain 1y71A in template set Warning: unaligning (T0547)L583 (1y71A)E105 because T (delta_L) conformation "forbidden" or filtered. T0547 582 :K 1y71A 104 :S T0547 584 :VNDKQKK 1y71A 106 :DDSPFAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52975 # 1xrxA.582.17 read from T0547.t2k.many.frag # found chain 1xrxA in template set Warning: unaligning (T0547)K582 (1xrxA)T18 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LVNDKQKK 1xrxA 19 :KHIGESAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=52976 # 2atfA.582.22 read from T0547.t2k.many.frag # found chain 2atfA in template set T0547 582 :KLVNDKQKK 2atfA 23 :FAGDEVNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52977 # 1wpbA.582.155 read from T0547.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0547)K582 because of BadResidue code BAD_PEPTIDE in next template residue (1wpbA)R155 Warning: unaligning (T0547)L583 because of BadResidue code BAD_PEPTIDE at template residue (1wpbA)R155 Warning: unaligning (T0547)D586 (1wpbA)H158 because L (left) conformation "forbidden" or filtered. T0547 584 :VN 1wpbA 156 :QY T0547 587 :KQKK 1wpbA 159 :LSAN Number of specific fragments extracted= 2 number of extra gaps= 2 total=52979 # 1di1A.582.267 read from T0547.t2k.many.frag # found chain 1di1A in template set Warning: unaligning (T0547)K589 (1di1A)S313 because P (beta_P) conformation "forbidden" or filtered. T0547 582 :KLVNDKQ 1di1A 306 :IASPDGC T0547 590 :K 1di1A 314 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=52981 # 2d1eA.582.194 read from T0547.t2k.many.frag # found chain 2d1eA in training set Warning: unaligning (T0547)N585 (2d1eA)S198 because P (beta_P) conformation "forbidden" or filtered. T0547 582 :KLV 2d1eA 195 :EPL T0547 586 :DKQKK 2d1eA 199 :EAQTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=52983 # 1yo3A.582.41 read from T0547.t2k.many.frag # found chain 1yo3A in training set T0547 582 :KLVNDKQKK 1yo3A 23 :LQKYNVEKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52984 # 1ojrA.582.245 read from T0547.t2k.many.frag # found chain 1ojrA in training set Warning: unaligning (T0547)K582 (1ojrA)G246 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1ojrA)Q249 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1ojrA)T250 because Y (epsilon') conformation "forbidden" or filtered. T0547 583 :LV 1ojrA 247 :MK T0547 587 :KQKK 1ojrA 251 :ISRE Number of specific fragments extracted= 2 number of extra gaps= 2 total=52986 # 1k2xA.582.41 read from T0547.t2k.many.frag # found chain 1k2xA in training set T0547 582 :KLVNDKQKK 1k2xA 43 :LEAGESALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=52987 # 1ng6A.582.111 read from T0547.t2k.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)K582 (1ng6A)G112 because L (left) conformation "forbidden" or filtered. T0547 583 :LVNDKQKK 1ng6A 113 :ASSKADMG Number of specific fragments extracted= 1 number of extra gaps= 1 total=52988 # 2d2mC.582.98 read from T0547.t2k.many.frag # found chain 2d2mC in template set Warning: unaligning (T0547)N585 (2d2mC)A102 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (2d2mC)G103 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q588 (2d2mC)A105 because E (beta_S) conformation "forbidden" or filtered. T0547 582 :KLV 2d2mC 99 :QAR T0547 587 :K 2d2mC 104 :V T0547 589 :KK 2d2mC 106 :AA Number of specific fragments extracted= 3 number of extra gaps= 2 total=52991 # 1ecrA.582.197 read from T0547.t2k.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)N585 (1ecrA)A201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1ecrA)P202 because C (cis) conformation "forbidden" or filtered. T0547 582 :KLV 1ecrA 198 :RSV T0547 587 :KQKK 1ecrA 203 :WTRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=52993 # 1g8mA.582.477 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)D586 (1g8mA)G482 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q588 (1g8mA)K484 because P (beta_P) conformation "forbidden" or filtered. T0547 582 :KLVN 1g8mA 478 :KFKA T0547 587 :K 1g8mA 483 :V T0547 589 :KK 1g8mA 485 :RA Number of specific fragments extracted= 3 number of extra gaps= 2 total=52996 # 1u8vA.582.318 read from T0547.t2k.many.frag # found chain 1u8vA in training set Warning: unaligning (T0547)K582 (1u8vA)G319 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1u8vA)A323 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LVN 1u8vA 320 :AQK T0547 587 :KQKK 1u8vA 324 :SHVK Number of specific fragments extracted= 2 number of extra gaps= 2 total=52998 # 1jl0A.582.192 read from T0547.t2k.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)D586 (1jl0A)G197 because T (delta_L) conformation "forbidden" or filtered. T0547 582 :KLVN 1jl0A 193 :YMKD T0547 587 :KQKK 1jl0A 198 :VTAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=53000 # 1t4bA.583.190 read from T0547.t2k.many.frag # found chain 1t4bA in training set T0547 583 :LVNDKQKKH 1t4bA 191 :ATPSSAILD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53001 # 1l6xB.583.13 read from T0547.t2k.many.frag # found chain 1l6xB in training set Warning: unaligning (T0547)K587 (1l6xB)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 583 :LVND 1l6xB 19 :HDPN T0547 588 :QKKH 1l6xB 24 :NEEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=53003 # 1kxu.583.273 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 583 :LVNDKQKKH 1kxu 264 :PPRSEEVAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53004 # 1vprA.583.180 read from T0547.t2k.many.frag # found chain 1vprA in training set Warning: unaligning (T0547)N585 (1vprA)G1048 because S (epsilon) conformation "forbidden" or filtered. T0547 583 :LV 1vprA 1046 :KS T0547 586 :DKQKKH 1vprA 1049 :MLGAAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=53006 # 1vqoP.583.110 read from T0547.t2k.many.frag # found chain 1vqoP in template set T0547 583 :LVNDKQKKH 1vqoP 110 :DEGTLSSSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53007 # 2arcA.583.136 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 583 :LVNDKQKKH 2arcA 143 :GEGRYSELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53008 # 1utg.583.46 read from T0547.t2k.many.frag # found chain 1utg in training set T0547 583 :LVNDKQKKH 1utg 47 :SLPQTTREN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53009 # 1wteA.583.229 read from T0547.t2k.many.frag # found chain 1wteA in template set T0547 583 :LVNDKQKKH 1wteA 230 :DIKEKNKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53010 # 2a6sA.583.17 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 583 :LVNDKQKKH 2a6sA 18 :ETDKRIVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53011 # 1otkA.583.146 read from T0547.t2k.many.frag # found chain 1otkA in template set T0547 583 :LVNDKQKKH 1otkA 147 :NGTDVSGQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53012 # 2atfA.583.23 read from T0547.t2k.many.frag # found chain 2atfA in template set T0547 583 :LVNDKQKKH 2atfA 24 :AGDEVNVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53013 # 1xrxA.583.18 read from T0547.t2k.many.frag # found chain 1xrxA in template set T0547 583 :LVNDKQKKH 1xrxA 19 :KHIGESASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53014 # 1c3cA.583.364 read from T0547.t2k.many.frag # found chain 1c3cA in training set T0547 583 :LVNDKQKKH 1c3cA 366 :LTRKEAYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53015 # 1y71A.583.107 read from T0547.t2k.many.frag # found chain 1y71A in template set Warning: unaligning (T0547)L583 (1y71A)E105 because T (delta_L) conformation "forbidden" or filtered. T0547 584 :VNDKQKKH 1y71A 106 :DDSPFAER Number of specific fragments extracted= 1 number of extra gaps= 1 total=53016 # 1bh9B.583.65 read from T0547.t2k.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)D586 (1bh9B)P181 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)H591 (1bh9B)H186 because H (helix) conformation "forbidden" or filtered. T0547 583 :LVN 1bh9B 178 :EMP T0547 587 :KQKK 1bh9B 182 :LQPK Number of specific fragments extracted= 2 number of extra gaps= 2 total=53018 # 1kyqA.583.186 read from T0547.t2k.many.frag # found chain 1kyqA in template set T0547 583 :LVNDKQKKH 1kyqA 187 :QMGDLALED Number of specific fragments extracted= 1 number of extra gaps= 0 total=53019 # 1di1A.583.268 read from T0547.t2k.many.frag # found chain 1di1A in template set Warning: unaligning (T0547)K587 (1di1A)G311 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K589 (1di1A)S313 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LVND 1di1A 307 :ASPD T0547 588 :Q 1di1A 312 :C T0547 590 :KH 1di1A 314 :EA Number of specific fragments extracted= 3 number of extra gaps= 2 total=53022 # 1a32.583.70 read from T0547.t2k.many.frag # found chain 1a32 in template set T0547 583 :LVNDKQKKH 1a32 71 :NKDVARYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53023 # 2d1eA.583.195 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 583 :LVNDKQKKH 2d1eA 196 :PLSEAQTLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53024 # 1gvjA.583.84 read from T0547.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0547)L583 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. T0547 584 :VNDKQKKH 1gvjA 381 :KPKMNYEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=53025 # 1wpbA.583.156 read from T0547.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0547)L583 because of BadResidue code BAD_PEPTIDE at template residue (1wpbA)R155 Warning: unaligning (T0547)V584 (1wpbA)Q156 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1wpbA)H158 because L (left) conformation "forbidden" or filtered. T0547 585 :N 1wpbA 157 :Y T0547 587 :KQKKH 1wpbA 159 :LSANE Number of specific fragments extracted= 2 number of extra gaps= 2 total=53027 # 1g8mA.583.478 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)D586 (1g8mA)G482 because T (delta_L) conformation "forbidden" or filtered. T0547 583 :LVN 1g8mA 479 :FKA T0547 587 :KQKKH 1g8mA 483 :VKRAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=53029 # 1ojrA.583.246 read from T0547.t2k.many.frag # found chain 1ojrA in training set T0547 583 :LVNDKQKKH 1ojrA 247 :MKQTISREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53030 # 1ecrA.583.198 read from T0547.t2k.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)N585 (1ecrA)A201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1ecrA)P202 because C (cis) conformation "forbidden" or filtered. T0547 583 :LV 1ecrA 199 :SV T0547 587 :KQKKH 1ecrA 203 :WTREE Number of specific fragments extracted= 2 number of extra gaps= 1 total=53032 # 1z77A.583.140 read from T0547.t2k.many.frag # found chain 1z77A in template set Warning: unaligning (T0547)K587 (1z77A)V145 because E (beta_S) conformation "forbidden" or filtered. T0547 583 :LVND 1z77A 141 :LAED T0547 588 :QKKH 1z77A 146 :TEEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=53034 # 1k2xA.583.42 read from T0547.t2k.many.frag # found chain 1k2xA in training set T0547 583 :LVNDKQKKH 1k2xA 44 :EAGESALDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53035 # 1ng6A.583.112 read from T0547.t2k.many.frag # found chain 1ng6A in training set T0547 583 :LVNDKQKKH 1ng6A 113 :ASSKADMGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53036 # 1yo3A.583.42 read from T0547.t2k.many.frag # found chain 1yo3A in training set Warning: unaligning (T0547)N585 (1yo3A)Y26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K587 (1yo3A)V28 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LV 1yo3A 24 :QK T0547 586 :D 1yo3A 27 :N T0547 588 :QKKH 1yo3A 29 :EKDI Number of specific fragments extracted= 3 number of extra gaps= 2 total=53039 1lddA expands to /projects/compbio/data/pdb/1ldd.pdb.gz 1lddA:# 1lddA.583.40 read from T0547.t2k.many.frag # adding 1lddA to template set # found chain 1lddA in template set Warning: unaligning (T0547)L583 (1lddA)G813 because S (epsilon) conformation "forbidden" or filtered. T0547 584 :VNDKQKKH 1lddA 814 :YNRITLQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=53040 # 1h7cA.583.87 read from T0547.t2k.many.frag # found chain 1h7cA in training set T0547 583 :LVNDKQKKH 1h7cA 88 :LEEAEEYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53041 # 1t4bA.584.191 read from T0547.t2k.many.frag # found chain 1t4bA in training set T0547 584 :VNDKQKKHI 1t4bA 192 :TPSSAILDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53042 # 1kxu.584.274 read from T0547.t2k.many.frag # found chain 1kxu in template set Warning: unaligning (T0547)N585 (1kxu)R266 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 1kxu 265 :P T0547 586 :DKQKKHI 1kxu 267 :SEEVAVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=53044 # 1vprA.584.181 read from T0547.t2k.many.frag # found chain 1vprA in training set Warning: unaligning (T0547)V584 (1vprA)S1047 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1vprA)M1049 because N (gamma') conformation "forbidden" or filtered. T0547 585 :N 1vprA 1048 :G T0547 587 :KQKKHI 1vprA 1050 :LGAAEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=53046 # 1vqoP.584.111 read from T0547.t2k.many.frag # found chain 1vqoP in template set Warning: unaligning (T0547)N585 (1vqoP)G112 because T (delta_L) conformation "forbidden" or filtered. T0547 584 :V 1vqoP 111 :E T0547 586 :DKQKKHI 1vqoP 113 :TLSSSQY Number of specific fragments extracted= 2 number of extra gaps= 1 total=53048 # 1l6xB.584.14 read from T0547.t2k.many.frag # found chain 1l6xB in training set T0547 584 :VNDKQKKHI 1l6xB 20 :DPNLNEEQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53049 # 2atfA.584.24 read from T0547.t2k.many.frag # found chain 2atfA in template set T0547 584 :VNDKQKKHI 2atfA 25 :GDEVNVEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53050 # 1wteA.584.230 read from T0547.t2k.many.frag # found chain 1wteA in template set T0547 584 :VNDKQKKHI 1wteA 231 :IKEKNKDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53051 # 2arcA.584.137 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 584 :VNDKQKKHI 2arcA 144 :EGRYSELLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53052 # 1gvjA.584.85 read from T0547.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0547)K587 (1gvjA)M384 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q588 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0547 584 :VND 1gvjA 381 :KPK T0547 589 :KKHI 1gvjA 386 :YEKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=53054 # 2a6sA.584.18 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 584 :VNDKQKKHI 2a6sA 19 :TDKRIVKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53055 # 1g8mA.584.479 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)D586 (1g8mA)G482 because T (delta_L) conformation "forbidden" or filtered. T0547 584 :VN 1g8mA 480 :KA T0547 587 :KQKKHI 1g8mA 483 :VKRAEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=53057 # 1otkA.584.147 read from T0547.t2k.many.frag # found chain 1otkA in template set T0547 584 :VNDKQKKHI 1otkA 148 :GTDVSGQKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=53058 # 1utg.584.47 read from T0547.t2k.many.frag # found chain 1utg in training set Warning: unaligning (T0547)N585 (1utg)P49 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 1utg 48 :L T0547 586 :DKQKKHI 1utg 50 :QTTRENI Number of specific fragments extracted= 2 number of extra gaps= 1 total=53060 # 1y71A.584.108 read from T0547.t2k.many.frag # found chain 1y71A in template set Warning: unaligning (T0547)D586 (1y71A)S108 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :VN 1y71A 106 :DD T0547 587 :KQKKHI 1y71A 109 :PFAERS Number of specific fragments extracted= 2 number of extra gaps= 1 total=53062 # 1ojrA.584.247 read from T0547.t2k.many.frag # found chain 1ojrA in training set Warning: unaligning (T0547)N585 (1ojrA)Q249 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1ojrA)T250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q588 (1ojrA)S252 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 1ojrA 248 :K T0547 587 :K 1ojrA 251 :I T0547 589 :KKHI 1ojrA 253 :REEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=53065 # 1xrxA.584.19 read from T0547.t2k.many.frag # found chain 1xrxA in template set Warning: unaligning (T0547)D586 (1xrxA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 584 :VN 1xrxA 20 :HI T0547 587 :KQKKHI 1xrxA 23 :ESASDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=53067 # 1bh9B.584.66 read from T0547.t2k.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)D586 (1bh9B)P181 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)H591 (1bh9B)H186 because H (helix) conformation "forbidden" or filtered. T0547 584 :VN 1bh9B 179 :MP T0547 587 :KQKK 1bh9B 182 :LQPK T0547 592 :I 1bh9B 187 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=53070 # 1lddA.584.41 read from T0547.t2k.many.frag # found chain 1lddA in template set Warning: unaligning (T0547)K587 (1lddA)I817 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :VND 1lddA 814 :YNR T0547 588 :QKKHI 1lddA 818 :TLQQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=53072 # 2d1eA.584.196 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 584 :VNDKQKKHI 2d1eA 197 :LSEAQTLEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=53073 # 1wpbA.584.157 read from T0547.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0547)D586 (1wpbA)H158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q588 (1wpbA)S160 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :VN 1wpbA 156 :QY T0547 587 :K 1wpbA 159 :L T0547 589 :KKHI 1wpbA 161 :ANEI Number of specific fragments extracted= 3 number of extra gaps= 2 total=53076 1j5sA expands to /projects/compbio/data/pdb/1j5s.pdb.gz 1j5sA:# 1j5sA.584.436 read from T0547.t2k.many.frag # adding 1j5sA to template set # found chain 1j5sA in template set Warning: unaligning (T0547)V584 (1j5sA)K425 because G (3-10) conformation "forbidden" or filtered. T0547 585 :NDKQKKHI 1j5sA 426 :GQIPIKEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=53077 # 1t4fM.584.29 read from T0547.t2k.many.frag # found chain 1t4fM in template set T0547 584 :VNDKQKKHI 1t4fM 45 :KDTYTMKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53078 # 1bkrA.584.86 read from T0547.t2k.many.frag # found chain 1bkrA in training set T0547 584 :VNDKQKKHI 1bkrA 87 :VDHPDEKSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53079 # 1c3cA.584.365 read from T0547.t2k.many.frag # found chain 1c3cA in training set T0547 584 :VNDKQKKHI 1c3cA 367 :TRKEAYDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53080 # 1k2xA.584.43 read from T0547.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0547)V584 (1k2xA)A45 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K587 (1k2xA)S48 because P (beta_P) conformation "forbidden" or filtered. T0547 585 :ND 1k2xA 46 :GE T0547 588 :QKKHI 1k2xA 49 :ALDVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=53082 # 1ecrA.584.199 read from T0547.t2k.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)D586 (1ecrA)P202 because C (cis) conformation "forbidden" or filtered. T0547 584 :VN 1ecrA 200 :VA T0547 587 :KQKKHI 1ecrA 203 :WTREEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=53084 # 1a32.584.71 read from T0547.t2k.many.frag # found chain 1a32 in template set T0547 584 :VNDKQKKHI 1a32 72 :KDVARYREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53085 # 1h7cA.584.88 read from T0547.t2k.many.frag # found chain 1h7cA in training set T0547 584 :VNDKQKKHI 1h7cA 89 :EEAEEYKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53086 # 1ucrA.584.30 read from T0547.t2k.many.frag # found chain 1ucrA in training set T0547 584 :VNDKQKKHI 1ucrA 31 :FPDMKQREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53087 # 1yo3A.584.43 read from T0547.t2k.many.frag # found chain 1yo3A in training set T0547 584 :VNDKQKKHI 1yo3A 25 :KYNVEKDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53088 # 1t4bA.585.192 read from T0547.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)K587 (1t4bA)S195 because P (beta_P) conformation "forbidden" or filtered. T0547 585 :ND 1t4bA 193 :PS T0547 588 :QKKHIL 1t4bA 196 :AILDIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=53090 # 1vprA.585.182 read from T0547.t2k.many.frag # found chain 1vprA in training set Warning: unaligning (T0547)N585 (1vprA)G1048 because S (epsilon) conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 1vprA 1049 :MLGAAEAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=53091 # 1gvjA.585.86 read from T0547.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0547)K587 (1gvjA)M384 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q588 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0547 585 :ND 1gvjA 382 :PK T0547 589 :KKHIL 1gvjA 386 :YEKLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=53093 # 1kxu.585.275 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 585 :NDKQKKHIL 1kxu 266 :RSEEVAVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53094 # 1vqoP.585.112 read from T0547.t2k.many.frag # found chain 1vqoP in template set T0547 585 :NDKQKKHIL 1vqoP 112 :GTLSSSQYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53095 # 1g8mA.585.480 read from T0547.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)N585 (1g8mA)A481 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1g8mA)G482 because T (delta_L) conformation "forbidden" or filtered. T0547 587 :KQKKHIL 1g8mA 483 :VKRAEVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=53096 # 1lddA.585.42 read from T0547.t2k.many.frag # found chain 1lddA in template set T0547 585 :NDKQKKHIL 1lddA 815 :NRITLQQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53097 # 2atfA.585.25 read from T0547.t2k.many.frag # found chain 2atfA in template set T0547 585 :NDKQKKHIL 2atfA 26 :DEVNVEEVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53098 # 1l6xB.585.15 read from T0547.t2k.many.frag # found chain 1l6xB in training set Warning: unaligning (T0547)K587 (1l6xB)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 585 :ND 1l6xB 21 :PN T0547 588 :QKKHIL 1l6xB 24 :NEEQRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=53100 # 1t4fM.585.30 read from T0547.t2k.many.frag # found chain 1t4fM in template set Warning: unaligning (T0547)K587 (1t4fM)Y48 because E (beta_S) conformation "forbidden" or filtered. T0547 585 :ND 1t4fM 46 :DT T0547 588 :QKKHIL 1t4fM 49 :TMKEVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=53102 # 2a6sA.585.19 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 585 :NDKQKKHIL 2a6sA 20 :DKRIVKKIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53103 # 1wteA.585.231 read from T0547.t2k.many.frag # found chain 1wteA in template set T0547 585 :NDKQKKHIL 1wteA 232 :KEKNKDLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53104 # 1ucrA.585.31 read from T0547.t2k.many.frag # found chain 1ucrA in training set T0547 585 :NDKQKKHIL 1ucrA 32 :PDMKQREVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53105 # 1y71A.585.109 read from T0547.t2k.many.frag # found chain 1y71A in template set T0547 585 :NDKQKKHIL 1y71A 107 :DSPFAERSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53106 # 1ojrA.585.248 read from T0547.t2k.many.frag # found chain 1ojrA in training set Warning: unaligning (T0547)N585 (1ojrA)Q249 because Y (epsilon') conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 1ojrA 250 :TISREELI Number of specific fragments extracted= 1 number of extra gaps= 1 total=53107 # 1bkrA.585.87 read from T0547.t2k.many.frag # found chain 1bkrA in training set T0547 585 :NDKQKKHIL 1bkrA 88 :DHPDEKSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=53108 # 1utg.585.48 read from T0547.t2k.many.frag # found chain 1utg in training set T0547 585 :NDKQKKHIL 1utg 49 :PQTTRENIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=53109 # 2d1eA.585.197 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 585 :NDKQKKHIL 2d1eA 198 :SEAQTLEHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53110 # 1otkA.585.148 read from T0547.t2k.many.frag # found chain 1otkA in template set T0547 585 :NDKQKKHIL 1otkA 149 :TDVSGQKMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53111 # 2arcA.585.138 read from T0547.t2k.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)N585 (2arcA)G145 because S (epsilon) conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 2arcA 146 :RYSELLAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=53112 # 1bh9B.585.67 read from T0547.t2k.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)D586 (1bh9B)P181 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q588 (1bh9B)Q183 because P (beta_P) conformation "forbidden" or filtered. T0547 585 :N 1bh9B 180 :P T0547 587 :K 1bh9B 182 :L T0547 589 :KKHIL 1bh9B 184 :PKHMR Number of specific fragments extracted= 3 number of extra gaps= 2 total=53115 # 1j5sA.585.437 read from T0547.t2k.many.frag # found chain 1j5sA in template set Warning: unaligning (T0547)N585 (1j5sA)G426 because L (left) conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 1j5sA 427 :QIPIKEAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=53116 # 1xrxA.585.20 read from T0547.t2k.many.frag # found chain 1xrxA in template set Warning: unaligning (T0547)N585 (1xrxA)I21 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D586 (1xrxA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 587 :KQKKHIL 1xrxA 23 :ESASDIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=53117 # 1q7zA.585.480 read from T0547.t2k.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)D586 (1q7zA)E482 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q588 (1q7zA)K484 because L (left) conformation "forbidden" or filtered. T0547 585 :N 1q7zA 481 :A T0547 587 :K 1q7zA 483 :G T0547 589 :KKHIL 1q7zA 485 :PVEVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=53120 # 1j98A.585.129 read from T0547.t2k.many.frag # found chain 1j98A in training set T0547 585 :NDKQKKHIL 1j98A 130 :KLHDLEGAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53121 # 1ecrA.585.200 read from T0547.t2k.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)D586 (1ecrA)P202 because C (cis) conformation "forbidden" or filtered. T0547 585 :N 1ecrA 201 :A T0547 587 :KQKKHIL 1ecrA 203 :WTREEWQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=53123 # 2fnaA.585.317 read from T0547.t2k.many.frag # found chain 2fnaA in template set T0547 585 :NDKQKKHIL 2fnaA 317 :IEISDSEIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53124 # 1di1A.585.270 read from T0547.t2k.many.frag # found chain 1di1A in template set Warning: unaligning (T0547)K587 (1di1A)G311 because S (epsilon) conformation "forbidden" or filtered. T0547 585 :ND 1di1A 309 :PD T0547 588 :QKKHIL 1di1A 312 :CSEAAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=53126 # 1i12A.585.31 read from T0547.t2k.many.frag # found chain 1i12A in training set Warning: unaligning (T0547)N585 (1i12A)G31 because S (epsilon) conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 1i12A 32 :TITPESFC Number of specific fragments extracted= 1 number of extra gaps= 1 total=53127 # 1u0jA.585.235 read from T0547.t2k.many.frag # found chain 1u0jA in template set Warning: unaligning (T0547)D586 (1u0jA)K460 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K587 (1u0jA)V461 because P (beta_P) conformation "forbidden" or filtered. T0547 585 :N 1u0jA 459 :G T0547 588 :QKKHIL 1u0jA 462 :TKQEVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=53129 # 1gvjA.586.87 read from T0547.t2k.many.frag # found chain 1gvjA in training set T0547 586 :DKQKKHILG 1gvjA 383 :KMNYEKLSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53130 # 1kxu.586.276 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 586 :DKQKKHILG 1kxu 267 :SEEVAVLKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53131 # 1g8mA.586.481 read from T0547.t2k.many.frag # found chain 1g8mA in training set T0547 586 :DKQKKHILG 1g8mA 482 :GVKRAEVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53132 # 1t4bA.586.193 read from T0547.t2k.many.frag # found chain 1t4bA in training set T0547 586 :DKQKKHILG 1t4bA 194 :SSAILDIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=53133 # 2a6sA.586.20 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 586 :DKQKKHILG 2a6sA 21 :KRIVKKINE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53134 # 1vprA.586.183 read from T0547.t2k.many.frag # found chain 1vprA in training set T0547 586 :DKQKKHILG 1vprA 1049 :MLGAAEANK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53135 # 1lddA.586.43 read from T0547.t2k.many.frag # found chain 1lddA in template set T0547 586 :DKQKKHILG 1lddA 816 :RITLQQLEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53136 # 1vqoP.586.113 read from T0547.t2k.many.frag # found chain 1vqoP in template set T0547 586 :DKQKKHILG 1vqoP 113 :TLSSSQYRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53137 # 1wteA.586.232 read from T0547.t2k.many.frag # found chain 1wteA in template set T0547 586 :DKQKKHILG 1wteA 233 :EKNKDLIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53138 # 1t4fM.586.31 read from T0547.t2k.many.frag # found chain 1t4fM in template set T0547 586 :DKQKKHILG 1t4fM 47 :TYTMKEVLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53139 # 1y71A.586.110 read from T0547.t2k.many.frag # found chain 1y71A in template set T0547 586 :DKQKKHILG 1y71A 108 :SPFAERSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53140 # 1ucrA.586.32 read from T0547.t2k.many.frag # found chain 1ucrA in training set Warning: unaligning (T0547)Q588 (1ucrA)K35 because P (beta_P) conformation "forbidden" or filtered. T0547 586 :DK 1ucrA 33 :DM T0547 589 :KKHILG 1ucrA 36 :QREVKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=53142 # 2d1eA.586.198 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 586 :DKQKKHILG 2d1eA 199 :EAQTLEHRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53143 # 1l6xB.586.16 read from T0547.t2k.many.frag # found chain 1l6xB in training set T0547 586 :DKQKKHILG 1l6xB 22 :NLNEEQRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53144 # 1otkA.586.149 read from T0547.t2k.many.frag # found chain 1otkA in template set T0547 586 :DKQKKHILG 1otkA 150 :DVSGQKMQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53145 # 1utg.586.49 read from T0547.t2k.many.frag # found chain 1utg in training set T0547 586 :DKQKKHILG 1utg 50 :QTTRENIMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53146 # 1q7zA.586.481 read from T0547.t2k.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)D586 (1q7zA)E482 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q588 (1q7zA)K484 because L (left) conformation "forbidden" or filtered. T0547 587 :K 1q7zA 483 :G T0547 589 :KKHILG 1q7zA 485 :PVEVLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=53148 # 1bkrA.586.88 read from T0547.t2k.many.frag # found chain 1bkrA in training set Warning: unaligning (T0547)Q588 (1bkrA)D91 because P (beta_P) conformation "forbidden" or filtered. T0547 586 :DK 1bkrA 89 :HP T0547 589 :KKHILG 1bkrA 92 :EKSIIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=53150 # 2fnaA.586.318 read from T0547.t2k.many.frag # found chain 2fnaA in template set Warning: unaligning (T0547)D586 (2fnaA)E318 because P (beta_P) conformation "forbidden" or filtered. T0547 587 :KQKKHILG 2fnaA 319 :ISDSEIYN Number of specific fragments extracted= 1 number of extra gaps= 1 total=53151 # 1vpbA.586.134 read from T0547.t2k.many.frag # found chain 1vpbA in training set T0547 586 :DKQKKHILG 1vpbA 123 :SLNPDDKIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53152 # 2atfA.586.26 read from T0547.t2k.many.frag # found chain 2atfA in template set Warning: unaligning (T0547)D586 (2atfA)E27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K587 (2atfA)V28 because E (beta_S) conformation "forbidden" or filtered. T0547 588 :QKKHILG 2atfA 29 :NVEEVQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=53153 # 1ojrA.586.249 read from T0547.t2k.many.frag # found chain 1ojrA in training set Warning: unaligning (T0547)D586 (1ojrA)T250 because Y (epsilon') conformation "forbidden" or filtered. T0547 587 :KQKKHILG 1ojrA 251 :ISREELIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=53154 # 1bh9B.586.68 read from T0547.t2k.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)D586 (1bh9B)P181 because C (cis) conformation "forbidden" or filtered. T0547 587 :KQKKHILG 1bh9B 182 :LQPKHMRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=53155 # 1qo0D.586.160 read from T0547.t2k.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)D586 (1qo0D)G161 because L (left) conformation "forbidden" or filtered. T0547 587 :KQKKHILG 1qo0D 162 :WDEREAHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=53156 # 1ecrA.586.201 read from T0547.t2k.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)D586 (1ecrA)P202 because C (cis) conformation "forbidden" or filtered. T0547 587 :KQKKHILG 1ecrA 203 :WTREEWQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=53157 1if1A expands to /projects/compbio/data/pdb/1if1.pdb.gz 1if1A:# 1if1A.586.70 read from T0547.t2k.many.frag # adding 1if1A to template set # found chain 1if1A in template set Warning: unaligning (T0547)D586 (1if1A)E71 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q588 (1if1A)D73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K589 (1if1A)P74 because G (3-10) conformation "forbidden" or filtered. T0547 587 :K 1if1A 72 :P T0547 590 :KHILG 1if1A 75 :KTWKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=53159 # 1j98A.586.130 read from T0547.t2k.many.frag # found chain 1j98A in training set Warning: unaligning (T0547)D586 (1j98A)L131 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)K587 (1j98A)H132 because E (beta_S) conformation "forbidden" or filtered. T0547 588 :QKKHILG 1j98A 133 :DLEGAKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=53160 # 1sr9A.586.473 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)D586 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1sr9A)E474 T0547 587 :KQKKHILG 1sr9A 475 :VSPKEMWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53161 # 2arcA.586.139 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 586 :DKQKKHILG 2arcA 146 :RYSELLAIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53162 # 1j5sA.586.438 read from T0547.t2k.many.frag # found chain 1j5sA in template set T0547 586 :DKQKKHILG 1j5sA 427 :QIPIKEARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53163 # 1kxu.587.277 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 587 :KQKKHILGE 1kxu 268 :EEVAVLKQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53164 # 1gvjA.587.88 read from T0547.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0547)Q588 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0547 587 :K 1gvjA 384 :M T0547 589 :KKHILGE 1gvjA 386 :YEKLSRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=53166 # 2a6sA.587.21 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 587 :KQKKHILGE 2a6sA 22 :RIVKKINEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53167 # 1t4bA.587.194 read from T0547.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)K587 (1t4bA)S195 because P (beta_P) conformation "forbidden" or filtered. T0547 588 :QKKHILGE 1t4bA 196 :AILDIERK Number of specific fragments extracted= 1 number of extra gaps= 1 total=53168 # 1wteA.587.233 read from T0547.t2k.many.frag # found chain 1wteA in template set T0547 587 :KQKKHILGE 1wteA 234 :KNKDLIEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53169 # 1lddA.587.44 read from T0547.t2k.many.frag # found chain 1lddA in template set T0547 587 :KQKKHILGE 1lddA 817 :ITLQQLEGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53170 # 1y71A.587.111 read from T0547.t2k.many.frag # found chain 1y71A in template set T0547 587 :KQKKHILGE 1y71A 109 :PFAERSLET Number of specific fragments extracted= 1 number of extra gaps= 0 total=53171 # 1t4fM.587.32 read from T0547.t2k.many.frag # found chain 1t4fM in template set T0547 587 :KQKKHILGE 1t4fM 48 :YTMKEVLFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53172 # 1g8mA.587.482 read from T0547.t2k.many.frag # found chain 1g8mA in training set T0547 587 :KQKKHILGE 1g8mA 483 :VKRAEVSNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53173 # 1q7zA.587.482 read from T0547.t2k.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)Q588 (1q7zA)K484 because L (left) conformation "forbidden" or filtered. T0547 587 :K 1q7zA 483 :G T0547 589 :KKHILGE 1q7zA 485 :PVEVLKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=53175 # 2d1eA.587.199 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 587 :KQKKHILGE 2d1eA 200 :AQTLEHRQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53176 # 1otkA.587.150 read from T0547.t2k.many.frag # found chain 1otkA in template set T0547 587 :KQKKHILGE 1otkA 151 :VSGQKMQQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53177 # 1vprA.587.184 read from T0547.t2k.many.frag # found chain 1vprA in training set T0547 587 :KQKKHILGE 1vprA 1050 :LGAAEANKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53178 # 1ucrA.587.33 read from T0547.t2k.many.frag # found chain 1ucrA in training set T0547 587 :KQKKHILGE 1ucrA 34 :MKQREVKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53179 # 1vqoP.587.114 read from T0547.t2k.many.frag # found chain 1vqoP in template set T0547 587 :KQKKHILGE 1vqoP 114 :LSSSQYRDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53180 # 2fnaA.587.319 read from T0547.t2k.many.frag # found chain 2fnaA in template set T0547 587 :KQKKHILGE 2fnaA 319 :ISDSEIYNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53181 # 1bkrA.587.89 read from T0547.t2k.many.frag # found chain 1bkrA in training set T0547 587 :KQKKHILGE 1bkrA 90 :PDEKSIITY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53182 # 1vpbA.587.135 read from T0547.t2k.many.frag # found chain 1vpbA in training set T0547 587 :KQKKHILGE 1vpbA 124 :LNPDDKIEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=53183 # 1utg.587.50 read from T0547.t2k.many.frag # found chain 1utg in training set T0547 587 :KQKKHILGE 1utg 51 :TTRENIMKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53184 # 1ecrA.587.202 read from T0547.t2k.many.frag # found chain 1ecrA in template set T0547 587 :KQKKHILGE 1ecrA 203 :WTREEWQRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53185 # 1ojrA.587.250 read from T0547.t2k.many.frag # found chain 1ojrA in training set T0547 587 :KQKKHILGE 1ojrA 251 :ISREELIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53186 # 1l6xB.587.17 read from T0547.t2k.many.frag # found chain 1l6xB in training set T0547 587 :KQKKHILGE 1l6xB 23 :LNEEQRNAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53187 # 1qo0D.587.161 read from T0547.t2k.many.frag # found chain 1qo0D in template set T0547 587 :KQKKHILGE 1qo0D 162 :WDEREAHQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=53188 # 1sr9A.587.474 read from T0547.t2k.many.frag # found chain 1sr9A in template set T0547 587 :KQKKHILGE 1sr9A 475 :VSPKEMWDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53189 # 1j98A.587.131 read from T0547.t2k.many.frag # found chain 1j98A in training set T0547 587 :KQKKHILGE 1j98A 132 :HDLEGAKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53190 # 1if1A.587.71 read from T0547.t2k.many.frag # found chain 1if1A in template set Warning: unaligning (T0547)Q588 (1if1A)D73 because L (left) conformation "forbidden" or filtered. T0547 587 :K 1if1A 72 :P T0547 589 :KKHILGE 1if1A 74 :PKTWKAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=53192 # 2atfA.587.27 read from T0547.t2k.many.frag # found chain 2atfA in template set T0547 587 :KQKKHILGE 2atfA 28 :VNVEEVQAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53193 # 2arcA.587.140 read from T0547.t2k.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)K587 (2arcA)Y147 because G (3-10) conformation "forbidden" or filtered. T0547 588 :QKKHILGE 2arcA 148 :SELLAINL Number of specific fragments extracted= 1 number of extra gaps= 1 total=53194 # 1bh9B.587.69 read from T0547.t2k.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)K587 (1bh9B)L182 because P (beta_P) conformation "forbidden" or filtered. T0547 588 :QKKHILGE 1bh9B 183 :QPKHMREA Number of specific fragments extracted= 1 number of extra gaps= 1 total=53195 # 1wmhA.587.61 read from T0547.t2k.many.frag # found chain 1wmhA in training set Warning: unaligning (T0547)Q588 (1wmhA)S73 because Y (epsilon') conformation "forbidden" or filtered. T0547 587 :K 1wmhA 72 :S T0547 589 :KKHILGE 1wmhA 74 :QLELEEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=53197 # 1kxu.588.278 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 588 :QKKHILGEL 1kxu 269 :EVAVLKQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53198 # 2a6sA.588.22 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 588 :QKKHILGEL 2a6sA 23 :IVKKINELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53199 # 1y71A.588.112 read from T0547.t2k.many.frag # found chain 1y71A in template set T0547 588 :QKKHILGEL 1y71A 110 :FAERSLETL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53200 # 1gvjA.588.89 read from T0547.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0547)Q588 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0547 589 :KKHILGEL 1gvjA 386 :YEKLSRGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=53201 # 1wteA.588.234 read from T0547.t2k.many.frag # found chain 1wteA in template set T0547 588 :QKKHILGEL 1wteA 235 :NKDLIEKFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53202 # 1t4fM.588.33 read from T0547.t2k.many.frag # found chain 1t4fM in template set T0547 588 :QKKHILGEL 1t4fM 49 :TMKEVLFYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53203 # 1t4bA.588.195 read from T0547.t2k.many.frag # found chain 1t4bA in training set T0547 588 :QKKHILGEL 1t4bA 196 :AILDIERKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53204 # 1vpbA.588.136 read from T0547.t2k.many.frag # found chain 1vpbA in training set T0547 588 :QKKHILGEL 1vpbA 125 :NPDDKIEMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53205 # 2d1eA.588.200 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 588 :QKKHILGEL 2d1eA 201 :QTLEHRQGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53206 # 1q7zA.588.483 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 588 :QKKHILGEL 1q7zA 484 :KPVEVLKTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53207 # 1lddA.588.45 read from T0547.t2k.many.frag # found chain 1lddA in template set T0547 588 :QKKHILGEL 1lddA 818 :TLQQLEGYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53208 # 1ucrA.588.34 read from T0547.t2k.many.frag # found chain 1ucrA in training set Warning: unaligning (T0547)Q588 (1ucrA)K35 because P (beta_P) conformation "forbidden" or filtered. T0547 589 :KKHILGEL 1ucrA 36 :QREVKKIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=53209 # 2fnaA.588.320 read from T0547.t2k.many.frag # found chain 2fnaA in template set T0547 588 :QKKHILGEL 2fnaA 320 :SDSEIYNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53210 # 1otkA.588.151 read from T0547.t2k.many.frag # found chain 1otkA in template set T0547 588 :QKKHILGEL 1otkA 152 :SGQKMQQAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53211 # 1g8mA.588.483 read from T0547.t2k.many.frag # found chain 1g8mA in training set T0547 588 :QKKHILGEL 1g8mA 484 :KRAEVSNAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53212 # 1vqoP.588.115 read from T0547.t2k.many.frag # found chain 1vqoP in template set T0547 588 :QKKHILGEL 1vqoP 115 :SSSQYRDLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53213 # 1bkrA.588.90 read from T0547.t2k.many.frag # found chain 1bkrA in training set T0547 588 :QKKHILGEL 1bkrA 91 :DEKSIITYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53214 # 1vprA.588.185 read from T0547.t2k.many.frag # found chain 1vprA in training set T0547 588 :QKKHILGEL 1vprA 1051 :GAAEANKIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53215 # 1wmhA.588.62 read from T0547.t2k.many.frag # found chain 1wmhA in training set T0547 588 :QKKHILGEL 1wmhA 73 :SQLELEEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53216 # 1sr9A.588.475 read from T0547.t2k.many.frag # found chain 1sr9A in template set T0547 588 :QKKHILGEL 1sr9A 476 :SPKEMWDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53217 # 1utg.588.51 read from T0547.t2k.many.frag # found chain 1utg in training set T0547 588 :QKKHILGEL 1utg 52 :TRENIMKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53218 # 1j98A.588.132 read from T0547.t2k.many.frag # found chain 1j98A in training set T0547 588 :QKKHILGEL 1j98A 133 :DLEGAKRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=53219 # 1if1A.588.72 read from T0547.t2k.many.frag # found chain 1if1A in template set Warning: unaligning (T0547)Q588 (1if1A)D73 because L (left) conformation "forbidden" or filtered. T0547 589 :KKHILGEL 1if1A 74 :PKTWKANF Number of specific fragments extracted= 1 number of extra gaps= 1 total=53220 # 1mzbA.588.51 read from T0547.t2k.many.frag # found chain 1mzbA in template set T0547 588 :QKKHILGEL 1mzbA 50 :GLATVYRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53221 # 1ecrA.588.203 read from T0547.t2k.many.frag # found chain 1ecrA in template set T0547 588 :QKKHILGEL 1ecrA 204 :TREEWQRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53222 # 2arcA.588.141 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 588 :QKKHILGEL 2arcA 148 :SELLAINLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53223 1z7uA expands to /projects/compbio/data/pdb/1z7u.pdb.gz 1z7uA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 60, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 62, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 64, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 66, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 68, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 70, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 72, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 74, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 76, because occupancy 0.500 <= existing 0.500 in 1z7uA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 259, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 261, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 263, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 265, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 267, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 269, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 271, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 273, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 275, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 297, because occupancy 0.400 <= existing 0.600 in 1z7uA Skipped atom 299, because occupancy 0.400 <= existing 0.600 in 1z7uA Skipped atom 301, because occupancy 0.400 <= existing 0.600 in 1z7uA Skipped atom 303, because occupancy 0.400 <= existing 0.600 in 1z7uA Skipped atom 305, because occupancy 0.400 <= existing 0.600 in 1z7uA Skipped atom 307, because occupancy 0.400 <= existing 0.600 in 1z7uA Skipped atom 309, because occupancy 0.400 <= existing 0.600 in 1z7uA Skipped atom 311, because occupancy 0.400 <= existing 0.600 in 1z7uA Skipped atom 313, because occupancy 0.400 <= existing 0.600 in 1z7uA Skipped atom 315, because occupancy 0.400 <= existing 0.600 in 1z7uA Skipped atom 317, because occupancy 0.400 <= existing 0.600 in 1z7uA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 596, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 598, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 600, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 602, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 604, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 606, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 608, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 610, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 909, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 911, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 913, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 915, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 917, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 919, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 921, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 923, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 925, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 927, because occupancy 0.500 <= existing 0.500 in 1z7uA Skipped atom 929, because occupancy 0.500 <= existing 0.500 in 1z7uA # 1z7uA.588.48 read from T0547.t2k.many.frag # adding 1z7uA to template set # found chain 1z7uA in template set T0547 588 :QKKHILGEL 1z7uA 46 :TQRVLTDRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53224 # 2fq4A.588.173 read from T0547.t2k.many.frag # found chain 2fq4A in training set T0547 588 :QKKHILGEL 2fq4A 174 :DDSYVHDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53225 # 1qo0D.588.162 read from T0547.t2k.many.frag # found chain 1qo0D in template set T0547 588 :QKKHILGEL 1qo0D 163 :DEREAHQHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53226 # 2c1vA.588.161 read from T0547.t2k.many.frag # found chain 2c1vA in training set T0547 588 :QKKHILGEL 2c1vA 162 :TFDNFAAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53227 # 1kxu.589.279 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 589 :KKHILGELY 1kxu 270 :VAVLKQKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53228 # 2a6sA.589.23 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 589 :KKHILGELY 2a6sA 24 :VKKINELIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53229 # 1y71A.589.113 read from T0547.t2k.many.frag # found chain 1y71A in template set T0547 589 :KKHILGELY 1y71A 111 :AERSLETLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53230 # 1vpbA.589.137 read from T0547.t2k.many.frag # found chain 1vpbA in training set T0547 589 :KKHILGELY 1vpbA 126 :PDDKIEMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53231 # 1wteA.589.235 read from T0547.t2k.many.frag # found chain 1wteA in template set T0547 589 :KKHILGELY 1wteA 236 :KDLIEKFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53232 # 1gvjA.589.90 read from T0547.t2k.many.frag # found chain 1gvjA in training set T0547 589 :KKHILGELY 1gvjA 386 :YEKLSRGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53233 # 2d1eA.589.201 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 589 :KKHILGELY 2d1eA 202 :TLEHRQGQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53234 # 1lddA.589.46 read from T0547.t2k.many.frag # found chain 1lddA in template set Warning: unaligning (T0547)G594 (1lddA)G824 because H (helix) conformation "forbidden" or filtered. T0547 589 :KKHIL 1lddA 819 :LQQLE T0547 595 :ELY 1lddA 825 :YLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=53236 # 1ucrA.589.35 read from T0547.t2k.many.frag # found chain 1ucrA in training set T0547 589 :KKHILGELY 1ucrA 36 :QREVKKILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53237 # 2fnaA.589.321 read from T0547.t2k.many.frag # found chain 2fnaA in template set T0547 589 :KKHILGELY 2fnaA 321 :DSEIYNYLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53238 # 1t4bA.589.196 read from T0547.t2k.many.frag # found chain 1t4bA in training set T0547 589 :KKHILGELY 1t4bA 197 :ILDIERKVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53239 # 1wmhA.589.63 read from T0547.t2k.many.frag # found chain 1wmhA in training set T0547 589 :KKHILGELY 1wmhA 74 :QLELEEAFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53240 # 1t4fM.589.34 read from T0547.t2k.many.frag # found chain 1t4fM in template set T0547 589 :KKHILGELY 1t4fM 50 :MKEVLFYLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53241 # 1q7zA.589.484 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 589 :KKHILGELY 1q7zA 485 :PVEVLKTIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53242 # 1otkA.589.152 read from T0547.t2k.many.frag # found chain 1otkA in template set T0547 589 :KKHILGELY 1otkA 153 :GQKMQQAIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53243 # 1j98A.589.133 read from T0547.t2k.many.frag # found chain 1j98A in training set T0547 589 :KKHILGELY 1j98A 134 :LEGAKRLMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53244 # 1g8mA.589.484 read from T0547.t2k.many.frag # found chain 1g8mA in training set T0547 589 :KKHILGELY 1g8mA 485 :RAEVSNAID Number of specific fragments extracted= 1 number of extra gaps= 0 total=53245 # 1vqoP.589.116 read from T0547.t2k.many.frag # found chain 1vqoP in template set T0547 589 :KKHILGELY 1vqoP 116 :SSQYRDLYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53246 # 1bkrA.589.91 read from T0547.t2k.many.frag # found chain 1bkrA in training set T0547 589 :KKHILGELY 1bkrA 92 :EKSIITYVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53247 # 1mzbA.589.52 read from T0547.t2k.many.frag # found chain 1mzbA in template set T0547 589 :KKHILGELY 1mzbA 51 :LATVYRVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53248 # 1if1A.589.73 read from T0547.t2k.many.frag # found chain 1if1A in template set T0547 589 :KKHILGELY 1if1A 74 :PKTWKANFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53249 # 1vprA.589.186 read from T0547.t2k.many.frag # found chain 1vprA in training set T0547 589 :KKHILGELY 1vprA 1052 :AAEANKIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53250 # 1z7uA.589.49 read from T0547.t2k.many.frag # found chain 1z7uA in template set T0547 589 :KKHILGELY 1z7uA 47 :QRVLTDRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53251 # 2arcA.589.142 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 589 :KKHILGELY 2arcA 149 :ELLAINLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53252 # 1sr9A.589.476 read from T0547.t2k.many.frag # found chain 1sr9A in template set T0547 589 :KKHILGELY 1sr9A 477 :PKEMWDAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53253 # 1utg.589.52 read from T0547.t2k.many.frag # found chain 1utg in training set T0547 589 :KKHILGELY 1utg 53 :RENIMKLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53254 # 2fq4A.589.174 read from T0547.t2k.many.frag # found chain 2fq4A in training set T0547 589 :KKHILGELY 2fq4A 175 :DSYVHDLVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53255 # 1khcA.589.114 read from T0547.t2k.many.frag # found chain 1khcA in training set T0547 589 :KKHILGELY 1khcA 333 :EDQLKPMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53256 1qysA expands to /projects/compbio/data/pdb/1qys.pdb.gz 1qysA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1qysA.589.59 read from T0547.t2k.many.frag # adding 1qysA to template set # found chain 1qysA in template set T0547 589 :KKHILGELY 1qysA 60 :AEKFAAILI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53257 # 1lucA.589.332 read from T0547.t2k.many.frag # found chain 1lucA in training set T0547 589 :KKHILGELY 1lucA 333 :EEEIIASMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53258 # 1kxu.590.280 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 590 :KHILGELYL 1kxu 271 :AVLKQKLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=53259 # 1y71A.590.114 read from T0547.t2k.many.frag # found chain 1y71A in template set T0547 590 :KHILGELYL 1y71A 112 :ERSLETLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53260 # 1wteA.590.236 read from T0547.t2k.many.frag # found chain 1wteA in template set T0547 590 :KHILGELYL 1wteA 237 :DLIEKFKEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=53261 # 1vpbA.590.138 read from T0547.t2k.many.frag # found chain 1vpbA in training set T0547 590 :KHILGELYL 1vpbA 127 :DDKIEMAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53262 # 2a6sA.590.24 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 590 :KHILGELYL 2a6sA 25 :KKINELIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53263 # 1wmhA.590.64 read from T0547.t2k.many.frag # found chain 1wmhA in training set T0547 590 :KHILGELYL 1wmhA 75 :LELEEAFRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53264 # 2d1eA.590.202 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 590 :KHILGELYL 2d1eA 203 :LEHRQGQIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=53265 # 1gvjA.590.91 read from T0547.t2k.many.frag # found chain 1gvjA in training set T0547 590 :KHILGELYL 1gvjA 387 :EKLSRGLRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53266 # 1lddA.590.47 read from T0547.t2k.many.frag # found chain 1lddA in template set T0547 590 :KHILGELYL 1lddA 820 :QQLEGYLNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53267 # 1ucrA.590.36 read from T0547.t2k.many.frag # found chain 1ucrA in training set T0547 590 :KHILGELYL 1ucrA 37 :REVKKILTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53268 # 2fnaA.590.322 read from T0547.t2k.many.frag # found chain 2fnaA in template set T0547 590 :KHILGELYL 2fnaA 322 :SEIYNYLTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53269 # 1t4fM.590.35 read from T0547.t2k.many.frag # found chain 1t4fM in template set T0547 590 :KHILGELYL 1t4fM 51 :KEVLFYLGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53270 # 1q7zA.590.485 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 590 :KHILGELYL 1q7zA 486 :VEVLKTIEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53271 # 1otkA.590.153 read from T0547.t2k.many.frag # found chain 1otkA in template set T0547 590 :KHILGELYL 1otkA 154 :QKMQQAINK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53272 # 1t4bA.590.197 read from T0547.t2k.many.frag # found chain 1t4bA in training set T0547 590 :KHILGELYL 1t4bA 198 :LDIERKVTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53273 # 1mzbA.590.53 read from T0547.t2k.many.frag # found chain 1mzbA in template set T0547 590 :KHILGELYL 1mzbA 52 :ATVYRVLTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53274 # 1z7uA.590.50 read from T0547.t2k.many.frag # found chain 1z7uA in template set T0547 590 :KHILGELYL 1z7uA 48 :RVLTDRLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53275 # 1vqoP.590.117 read from T0547.t2k.many.frag # found chain 1vqoP in template set T0547 590 :KHILGELYL 1vqoP 117 :SQYRDLYDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53276 # 1j98A.590.134 read from T0547.t2k.many.frag # found chain 1j98A in training set T0547 590 :KHILGELYL 1j98A 135 :EGAKRLMRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53277 # 2fq4A.590.175 read from T0547.t2k.many.frag # found chain 2fq4A in training set T0547 590 :KHILGELYL 2fq4A 176 :SYVHDLVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53278 # 1g8mA.590.485 read from T0547.t2k.many.frag # found chain 1g8mA in training set T0547 590 :KHILGELYL 1g8mA 486 :AEVSNAIDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53279 # 2fh5A.590.123 read from T0547.t2k.many.frag # found chain 2fh5A in template set T0547 590 :KHILGELYL 2fh5A 115 :NDFLRLLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53280 # 1khcA.590.115 read from T0547.t2k.many.frag # found chain 1khcA in training set T0547 590 :KHILGELYL 1khcA 334 :DQLKPMLEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=53281 # 1bkrA.590.92 read from T0547.t2k.many.frag # found chain 1bkrA in training set T0547 590 :KHILGELYL 1bkrA 93 :KSIITYVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53282 # 1qysA.590.60 read from T0547.t2k.many.frag # found chain 1qysA in template set T0547 590 :KHILGELYL 1qysA 61 :EKFAAILIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53283 # 1if1A.590.74 read from T0547.t2k.many.frag # found chain 1if1A in template set T0547 590 :KHILGELYL 1if1A 75 :KTWKANFRC Number of specific fragments extracted= 1 number of extra gaps= 0 total=53284 # 2arcA.590.143 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 590 :KHILGELYL 2arcA 150 :LLAINLLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53285 # 1kq6A.590.87 read from T0547.t2k.many.frag # found chain 1kq6A in training set Warning: unaligning (T0547)G594 (1kq6A)G92 because H (helix) conformation "forbidden" or filtered. T0547 590 :KHIL 1kq6A 88 :ENRQ T0547 595 :ELYL 1kq6A 93 :TLTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=53287 # 2ccmA.590.142 read from T0547.t2k.many.frag # found chain 2ccmA in training set T0547 590 :KHILGELYL 2ccmA 143 :SDCDAAFDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53288 # 1u7iA.590.89 read from T0547.t2k.many.frag # found chain 1u7iA in training set T0547 590 :KHILGELYL 1u7iA 88 :AQIERLAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53289 # 1y71A.591.115 read from T0547.t2k.many.frag # found chain 1y71A in template set T0547 591 :HILGELYLF 1y71A 113 :RSLETLQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53290 # 1kxu.591.281 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 591 :HILGELYLF 1kxu 272 :VLKQKLERC Number of specific fragments extracted= 1 number of extra gaps= 0 total=53291 # 1vpbA.591.139 read from T0547.t2k.many.frag # found chain 1vpbA in training set T0547 591 :HILGELYLF 1vpbA 128 :DKIEMAKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53292 # 1wteA.591.237 read from T0547.t2k.many.frag # found chain 1wteA in template set T0547 591 :HILGELYLF 1wteA 238 :LIEKFKEHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53293 # 1wmhA.591.65 read from T0547.t2k.many.frag # found chain 1wmhA in training set T0547 591 :HILGELYLF 1wmhA 76 :ELEEAFRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53294 # 2a6sA.591.25 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 591 :HILGELYLF 2a6sA 26 :KINELIKDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53295 # 1lddA.591.48 read from T0547.t2k.many.frag # found chain 1lddA in template set T0547 591 :HILGELYLF 1lddA 821 :QLEGYLNTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53296 # 2d1eA.591.203 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 591 :HILGELYLF 2d1eA 204 :EHRQGQIHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53297 # 1ucrA.591.37 read from T0547.t2k.many.frag # found chain 1ucrA in training set T0547 591 :HILGELYLF 1ucrA 38 :EVKKILTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53298 # 1gvjA.591.92 read from T0547.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0547)F599 (1gvjA)Y396 because G (3-10) conformation "forbidden" or filtered. T0547 591 :HILGELYL 1gvjA 388 :KLSRGLRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=53299 # 1t4fM.591.36 read from T0547.t2k.many.frag # found chain 1t4fM in template set T0547 591 :HILGELYLF 1t4fM 52 :EVLFYLGQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53300 # 1q7zA.591.486 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 591 :HILGELYLF 1q7zA 487 :EVLKTIEFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53301 # 2fnaA.591.323 read from T0547.t2k.many.frag # found chain 2fnaA in template set T0547 591 :HILGELYLF 2fnaA 323 :EIYNYLTQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53302 # 1otkA.591.154 read from T0547.t2k.many.frag # found chain 1otkA in template set T0547 591 :HILGELYLF 1otkA 155 :KMQQAINKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53303 # 1khcA.591.116 read from T0547.t2k.many.frag # found chain 1khcA in training set T0547 591 :HILGELYLF 1khcA 335 :QLKPMLEWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53304 # 2arcA.591.144 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 591 :HILGELYLF 2arcA 151 :LAINLLEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53305 # 1mzbA.591.54 read from T0547.t2k.many.frag # found chain 1mzbA in template set T0547 591 :HILGELYLF 1mzbA 53 :TVYRVLTQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53306 # 2fh5A.591.124 read from T0547.t2k.many.frag # found chain 2fh5A in template set T0547 591 :HILGELYLF 2fh5A 116 :DFLRLLREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53307 # 1z7uA.591.51 read from T0547.t2k.many.frag # found chain 1z7uA in template set T0547 591 :HILGELYLF 1z7uA 49 :VLTDRLREM Number of specific fragments extracted= 1 number of extra gaps= 0 total=53308 # 1j98A.591.135 read from T0547.t2k.many.frag # found chain 1j98A in training set T0547 591 :HILGELYLF 1j98A 136 :GAKRLMRFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=53309 # 1kq6A.591.88 read from T0547.t2k.many.frag # found chain 1kq6A in training set T0547 591 :HILGELYLF 1kq6A 89 :NRQGTLTEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53310 # 1t4bA.591.198 read from T0547.t2k.many.frag # found chain 1t4bA in training set T0547 591 :HILGELYLF 1t4bA 199 :DIERKVTTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53311 # 1bkrA.591.93 read from T0547.t2k.many.frag # found chain 1bkrA in training set T0547 591 :HILGELYLF 1bkrA 94 :SIITYVVTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53312 # 2c60A.591.85 read from T0547.t2k.many.frag # found chain 2c60A in training set T0547 591 :HILGELYLF 2c60A 99 :DLDKAIDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53313 # 2ccmA.591.143 read from T0547.t2k.many.frag # found chain 2ccmA in training set T0547 591 :HILGELYLF 2ccmA 144 :DCDAAFDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53314 # 1qysA.591.61 read from T0547.t2k.many.frag # found chain 1qysA in template set T0547 591 :HILGELYLF 1qysA 62 :KFAAILIKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53315 # 1u7iA.591.90 read from T0547.t2k.many.frag # found chain 1u7iA in training set T0547 591 :HILGELYLF 1u7iA 89 :QIERLAEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53316 # 1lucA.591.334 read from T0547.t2k.many.frag # found chain 1lucA in training set T0547 591 :HILGELYLF 1lucA 335 :EIIASMKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53317 # 1vqoP.591.118 read from T0547.t2k.many.frag # found chain 1vqoP in template set T0547 591 :HILGELYLF 1vqoP 118 :QYRDLYDKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53318 # 2fq4A.591.176 read from T0547.t2k.many.frag # found chain 2fq4A in training set T0547 591 :HILGELYLF 2fq4A 177 :YVHDLVINA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53319 # 1y71A.592.116 read from T0547.t2k.many.frag # found chain 1y71A in template set T0547 592 :ILGELYLFL 1y71A 114 :SLETLQQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53320 # 1kxu.592.282 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 592 :ILGELYLFL 1kxu 273 :LKQKLERCH Number of specific fragments extracted= 1 number of extra gaps= 0 total=53321 # 1wteA.592.238 read from T0547.t2k.many.frag # found chain 1wteA in template set T0547 592 :ILGELYLFL 1wteA 239 :IEKFKEHVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53322 # 1vpbA.592.140 read from T0547.t2k.many.frag # found chain 1vpbA in training set T0547 592 :ILGELYLFL 1vpbA 129 :KIEMAKAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53323 # 1wmhA.592.66 read from T0547.t2k.many.frag # found chain 1wmhA in training set T0547 592 :ILGELYLFL 1wmhA 77 :LEEAFRLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53324 # 1q7zA.592.487 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 592 :ILGELYLFL 1q7zA 488 :VLKTIEFIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53325 # 1lddA.592.49 read from T0547.t2k.many.frag # found chain 1lddA in template set T0547 592 :ILGELYLFL 1lddA 822 :LEGYLNTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53326 # 1khcA.592.117 read from T0547.t2k.many.frag # found chain 1khcA in training set T0547 592 :ILGELYLFL 1khcA 336 :LKPMLEWAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=53327 # 2a6sA.592.26 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 592 :ILGELYLFL 2a6sA 27 :INELIKDTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53328 # 1mzbA.592.55 read from T0547.t2k.many.frag # found chain 1mzbA in template set T0547 592 :ILGELYLFL 1mzbA 54 :VYRVLTQFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53329 # 1t4fM.592.37 read from T0547.t2k.many.frag # found chain 1t4fM in template set T0547 592 :ILGELYLFL 1t4fM 53 :VLFYLGQYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53330 # 1ucrA.592.38 read from T0547.t2k.many.frag # found chain 1ucrA in training set T0547 592 :ILGELYLFL 1ucrA 39 :VKKILTALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53331 # 2d1eA.592.204 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 592 :ILGELYLFL 2d1eA 205 :HRQGQIHYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=53332 # 2fh5A.592.125 read from T0547.t2k.many.frag # found chain 2fh5A in template set T0547 592 :ILGELYLFL 2fh5A 117 :FLRLLREAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53333 # 2ccmA.592.144 read from T0547.t2k.many.frag # found chain 2ccmA in training set T0547 592 :ILGELYLFL 2ccmA 145 :CDAAFDTLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53334 # 1u7iA.592.91 read from T0547.t2k.many.frag # found chain 1u7iA in training set T0547 592 :ILGELYLFL 1u7iA 90 :IERLAEALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53335 # 1gvjA.592.93 read from T0547.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0547)F599 (1gvjA)Y396 because G (3-10) conformation "forbidden" or filtered. T0547 592 :ILGELYL 1gvjA 389 :LSRGLRY T0547 600 :L 1gvjA 397 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=53337 # 2fnaA.592.324 read from T0547.t2k.many.frag # found chain 2fnaA in template set T0547 592 :ILGELYLFL 2fnaA 324 :IYNYLTQLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53338 # 1kq6A.592.89 read from T0547.t2k.many.frag # found chain 1kq6A in training set T0547 592 :ILGELYLFL 1kq6A 90 :RQGTLTEYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=53339 # 1z7uA.592.52 read from T0547.t2k.many.frag # found chain 1z7uA in template set T0547 592 :ILGELYLFL 1z7uA 50 :LTDRLREME Number of specific fragments extracted= 1 number of extra gaps= 0 total=53340 # 1usyA.592.204 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 592 :ILGELYLFL 1usyA 205 :LLSASSFLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53341 # 2c60A.592.86 read from T0547.t2k.many.frag # found chain 2c60A in training set T0547 592 :ILGELYLFL 2c60A 100 :LDKAIDILD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53342 # 2arcA.592.145 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 592 :ILGELYLFL 2arcA 152 :AINLLEQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53343 # 1qysA.592.62 read from T0547.t2k.many.frag # found chain 1qysA in template set T0547 592 :ILGELYLFL 1qysA 63 :FAAILIKVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53344 # 1lucA.592.335 read from T0547.t2k.many.frag # found chain 1lucA in training set T0547 592 :ILGELYLFL 1lucA 336 :IIASMKLFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53345 # 1otkA.592.155 read from T0547.t2k.many.frag # found chain 1otkA in template set T0547 592 :ILGELYLFL 1otkA 156 :MQQAINKLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=53346 # 1j98A.592.136 read from T0547.t2k.many.frag # found chain 1j98A in training set T0547 592 :ILGELYLFL 1j98A 137 :AKRLMRFWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53347 1yk3A expands to /projects/compbio/data/pdb/1yk3.pdb.gz 1yk3A:# 1yk3A.592.147 read from T0547.t2k.many.frag # adding 1yk3A to template set # found chain 1yk3A in template set T0547 592 :ILGELYLFL 1yk3A 148 :LPRIVASVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53348 # 1lfpA.592.217 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 592 :ILGELYLFL 1lfpA 218 :VIKLLNALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53349 # 1if1A.592.76 read from T0547.t2k.many.frag # found chain 1if1A in template set T0547 592 :ILGELYLFL 1if1A 77 :WKANFRCAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=53350 # 1y71A.593.117 read from T0547.t2k.many.frag # found chain 1y71A in template set T0547 593 :LGELYLFLN 1y71A 115 :LETLQQLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53351 # 1kxu.593.283 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 593 :LGELYLFLN 1kxu 274 :KQKLERCHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53352 # 1vpbA.593.141 read from T0547.t2k.many.frag # found chain 1vpbA in training set T0547 593 :LGELYLFLN 1vpbA 130 :IEMAKAVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53353 # 1wteA.593.239 read from T0547.t2k.many.frag # found chain 1wteA in template set T0547 593 :LGELYLFLN 1wteA 240 :EKFKEHVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53354 # 1wmhA.593.67 read from T0547.t2k.many.frag # found chain 1wmhA in training set T0547 593 :LGELYLFLN 1wmhA 78 :EEAFRLYEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53355 # 2ccmA.593.145 read from T0547.t2k.many.frag # found chain 2ccmA in training set T0547 593 :LGELYLFLN 2ccmA 146 :DAAFDTLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53356 # 1u7iA.593.92 read from T0547.t2k.many.frag # found chain 1u7iA in training set T0547 593 :LGELYLFLN 1u7iA 91 :ERLAEALSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53357 # 1q7zA.593.488 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 593 :LGELYLFLN 1q7zA 489 :LKTIEFISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53358 # 1lddA.593.50 read from T0547.t2k.many.frag # found chain 1lddA in template set T0547 593 :LGELYLFLN 1lddA 823 :EGYLNTLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53359 # 1khcA.593.118 read from T0547.t2k.many.frag # found chain 1khcA in training set T0547 593 :LGELYLFLN 1khcA 337 :KPMLEWAHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53360 # 1mzbA.593.56 read from T0547.t2k.many.frag # found chain 1mzbA in template set T0547 593 :LGELYLFLN 1mzbA 55 :YRVLTQFEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53361 # 1gvjA.593.94 read from T0547.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0547)F599 (1gvjA)Y396 because G (3-10) conformation "forbidden" or filtered. T0547 593 :LGELYL 1gvjA 390 :SRGLRY T0547 600 :LN 1gvjA 397 :YD Number of specific fragments extracted= 2 number of extra gaps= 1 total=53363 # 1ucrA.593.39 read from T0547.t2k.many.frag # found chain 1ucrA in training set T0547 593 :LGELYLFLN 1ucrA 40 :KKILTALVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53364 # 2fh5A.593.126 read from T0547.t2k.many.frag # found chain 2fh5A in template set T0547 593 :LGELYLFLN 2fh5A 118 :LRLLREAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53365 # 1t4fM.593.38 read from T0547.t2k.many.frag # found chain 1t4fM in template set T0547 593 :LGELYLFLN 1t4fM 54 :LFYLGQYIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=53366 # 1tr0A.593.29 read from T0547.t2k.many.frag # found chain 1tr0A in training set T0547 593 :LGELYLFLN 1tr0A 30 :INDYTNLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53367 # 2a6sA.593.27 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 593 :LGELYLFLN 2a6sA 28 :NELIKDTRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53368 # 2d1eA.593.205 read from T0547.t2k.many.frag # found chain 2d1eA in training set T0547 593 :LGELYLFLN 2d1eA 206 :RQGQIHYCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53369 # 1kq6A.593.90 read from T0547.t2k.many.frag # found chain 1kq6A in training set T0547 593 :LGELYLFLN 1kq6A 91 :QGTLTEYCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53370 # 1usyA.593.205 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 593 :LGELYLFLN 1usyA 206 :LSASSFLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53371 # 1lucA.593.336 read from T0547.t2k.many.frag # found chain 1lucA in training set T0547 593 :LGELYLFLN 1lucA 337 :IASMKLFQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53372 # 1if1A.593.77 read from T0547.t2k.many.frag # found chain 1if1A in template set T0547 593 :LGELYLFLN 1if1A 78 :KANFRCAMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53373 # 1z7uA.593.53 read from T0547.t2k.many.frag # found chain 1z7uA in template set T0547 593 :LGELYLFLN 1z7uA 51 :TDRLREMEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53374 # 2fnaA.593.325 read from T0547.t2k.many.frag # found chain 2fnaA in template set T0547 593 :LGELYLFLN 2fnaA 325 :YNYLTQLTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53375 # 1lfpA.593.218 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 593 :LGELYLFLN 1lfpA 219 :IKLLNALEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53376 # 1qysA.593.63 read from T0547.t2k.many.frag # found chain 1qysA in template set T0547 593 :LGELYLFLN 1qysA 64 :AAILIKVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53377 # 1j98A.593.137 read from T0547.t2k.many.frag # found chain 1j98A in training set T0547 593 :LGELYLFLN 1j98A 138 :KRLMRFWLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53378 # 1zr6A.593.413 read from T0547.t2k.many.frag # found chain 1zr6A in training set T0547 593 :LGELYLFLN 1zr6A 408 :QGFVATIED Number of specific fragments extracted= 1 number of extra gaps= 0 total=53379 # 1gkmA.593.461 read from T0547.t2k.many.frag # found chain 1gkmA in training set T0547 593 :LGELYLFLN 1gkmA 462 :EKARQALRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53380 # 2arcA.593.146 read from T0547.t2k.many.frag # found chain 2arcA in training set T0547 593 :LGELYLFLN 2arcA 153 :INLLEQLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53381 # 1vpbA.594.142 read from T0547.t2k.many.frag # found chain 1vpbA in training set T0547 594 :GELYLFLND 1vpbA 131 :EMAKAVAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53382 # 1y71A.594.118 read from T0547.t2k.many.frag # found chain 1y71A in template set T0547 594 :GELYLFLND 1y71A 116 :ETLQQLKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53383 # 1u7iA.594.93 read from T0547.t2k.many.frag # found chain 1u7iA in training set Warning: unaligning (T0547)D602 (1u7iA)G100 because T (delta_L) conformation "forbidden" or filtered. T0547 594 :GELYLFLN 1u7iA 92 :RLAEALSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=53384 # 1kxu.594.284 read from T0547.t2k.many.frag # found chain 1kxu in template set T0547 594 :GELYLFLND 1kxu 275 :QKLERCHSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53385 # 1wteA.594.240 read from T0547.t2k.many.frag # found chain 1wteA in template set T0547 594 :GELYLFLND 1wteA 241 :KFKEHVAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53386 # 2ccmA.594.146 read from T0547.t2k.many.frag # found chain 2ccmA in training set T0547 594 :GELYLFLND 2ccmA 147 :AAFDTLSDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53387 # 1wmhA.594.68 read from T0547.t2k.many.frag # found chain 1wmhA in training set T0547 594 :GELYLFLND 1wmhA 79 :EAFRLYELN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53388 # 1oewA.594.228 read from T0547.t2k.many.frag # found chain 1oewA in training set T0547 594 :GELYLFLND 1oewA 229 :TVVSAYWAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53389 # 1gkmA.594.462 read from T0547.t2k.many.frag # found chain 1gkmA in training set T0547 594 :GELYLFLND 1gkmA 463 :KARQALRSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53390 # 1k8qA.594.329 read from T0547.t2k.many.frag # found chain 1k8qA in template set T0547 594 :GELYLFLND 1k8qA 330 :HDVDLLLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53391 # 1khcA.594.119 read from T0547.t2k.many.frag # found chain 1khcA in training set T0547 594 :GELYLFLND 1khcA 338 :PMLEWAHGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53392 # 1usyA.594.206 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 594 :GELYLFLND 1usyA 207 :SASSFLQEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53393 # 1q7zA.594.489 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 594 :GELYLFLND 1q7zA 490 :KTIEFISSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53394 # 1gvjA.594.95 read from T0547.t2k.many.frag # found chain 1gvjA in training set T0547 594 :GELYLFLND 1gvjA 391 :RGLRYYYDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53395 # 1lfpA.594.219 read from T0547.t2k.many.frag # found chain 1lfpA in training set Warning: unaligning (T0547)D602 (1lfpA)L228 because P (beta_P) conformation "forbidden" or filtered. T0547 594 :GELYLFLN 1lfpA 220 :KLLNALEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=53396 # 1zr6A.594.414 read from T0547.t2k.many.frag # found chain 1zr6A in training set T0547 594 :GELYLFLND 1zr6A 409 :GFVATIEDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53397 # 1tr0A.594.30 read from T0547.t2k.many.frag # found chain 1tr0A in training set T0547 594 :GELYLFLND 1tr0A 31 :NDYTNLLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53398 # 1lucA.594.337 read from T0547.t2k.many.frag # found chain 1lucA in training set T0547 594 :GELYLFLND 1lucA 338 :ASMKLFQSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53399 # 1j98A.594.138 read from T0547.t2k.many.frag # found chain 1j98A in training set T0547 594 :GELYLFLND 1j98A 139 :RLMRFWLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53400 # 1lddA.594.51 read from T0547.t2k.many.frag # found chain 1lddA in template set T0547 594 :GELYLFLND 1lddA 824 :GYLNTLADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53401 # 1ukfA.594.165 read from T0547.t2k.many.frag # found chain 1ukfA in training set T0547 594 :GELYLFLND 1ukfA 246 :GLIDHYNSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53402 # 2a6sA.594.28 read from T0547.t2k.many.frag # found chain 2a6sA in training set T0547 594 :GELYLFLND 2a6sA 29 :ELIKDTRRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53403 # 1mzbA.594.57 read from T0547.t2k.many.frag # found chain 1mzbA in template set T0547 594 :GELYLFLND 1mzbA 56 :RVLTQFEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53404 # 2fh5A.594.127 read from T0547.t2k.many.frag # found chain 2fh5A in template set T0547 594 :GELYLFLND 2fh5A 119 :RLLREAEES Number of specific fragments extracted= 1 number of extra gaps= 0 total=53405 # 2c60A.594.88 read from T0547.t2k.many.frag # found chain 2c60A in training set T0547 594 :GELYLFLND 2c60A 102 :KAIDILDRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53406 # 1ucrA.594.40 read from T0547.t2k.many.frag # found chain 1ucrA in training set T0547 594 :GELYLFLND 1ucrA 41 :KILTALVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=53407 # 2akoA.594.211 read from T0547.t2k.many.frag # found chain 2akoA in template set T0547 594 :GELYLFLND 2akoA 212 :KAAKFLLEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=53408 # 1yk3A.594.149 read from T0547.t2k.many.frag # found chain 1yk3A in template set T0547 594 :GELYLFLND 1yk3A 150 :RIVASVFAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53409 # 1t4fM.594.39 read from T0547.t2k.many.frag # found chain 1t4fM in template set T0547 594 :GELYLFLND 1t4fM 55 :FYLGQYIMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53410 1nekA expands to /projects/compbio/data/pdb/1nek.pdb.gz 1nekA:# 1nekA.594.484 read from T0547.t2k.many.frag # adding 1nekA to template set # found chain 1nekA in template set T0547 594 :GELYLFLND 1nekA 485 :EQLKVIRER Number of specific fragments extracted= 1 number of extra gaps= 0 total=53411 # 1u7iA.595.94 read from T0547.t2k.many.frag # found chain 1u7iA in training set Warning: unaligning (T0547)N603 (1u7iA)G101 because Y (epsilon') conformation "forbidden" or filtered. T0547 595 :ELYLFLND 1u7iA 93 :LAEALSDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=53412 # 1vpbA.595.143 read from T0547.t2k.many.frag # found chain 1vpbA in training set T0547 595 :ELYLFLNDN 1vpbA 132 :MAKAVAEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53413 # 1y71A.595.119 read from T0547.t2k.many.frag # found chain 1y71A in template set T0547 595 :ELYLFLNDN 1y71A 117 :TLQQLKKDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53414 # 1oewA.595.229 read from T0547.t2k.many.frag # found chain 1oewA in training set T0547 595 :ELYLFLNDN 1oewA 230 :VVSAYWAQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53415 # 2ccmA.595.147 read from T0547.t2k.many.frag # found chain 2ccmA in training set T0547 595 :ELYLFLNDN 2ccmA 148 :AFDTLSDGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53416 # 1wteA.595.241 read from T0547.t2k.many.frag # found chain 1wteA in template set T0547 595 :ELYLFLNDN 1wteA 242 :FKEHVAKKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53417 # 1ukfA.595.166 read from T0547.t2k.many.frag # found chain 1ukfA in training set T0547 595 :ELYLFLNDN 1ukfA 247 :LIDHYNSLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53418 # 1k8qA.595.330 read from T0547.t2k.many.frag # found chain 1k8qA in template set T0547 595 :ELYLFLNDN 1k8qA 331 :DVDLLLSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53419 # 1wmhA.595.69 read from T0547.t2k.many.frag # found chain 1wmhA in training set Warning: unaligning (T0547)N603 (1wmhA)K88 because L (left) conformation "forbidden" or filtered. T0547 595 :ELYLFLND 1wmhA 80 :AFRLYELN Number of specific fragments extracted= 1 number of extra gaps= 1 total=53420 # 1gkmA.595.463 read from T0547.t2k.many.frag # found chain 1gkmA in training set T0547 595 :ELYLFLNDN 1gkmA 464 :ARQALRSEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53421 # 2akoA.595.212 read from T0547.t2k.many.frag # found chain 2akoA in template set T0547 595 :ELYLFLNDN 2akoA 213 :AAKFLLEHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53422 # 1lucA.595.338 read from T0547.t2k.many.frag # found chain 1lucA in training set T0547 595 :ELYLFLNDN 1lucA 339 :SMKLFQSDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53423 # 1gvjA.595.96 read from T0547.t2k.many.frag # found chain 1gvjA in training set T0547 595 :ELYLFLNDN 1gvjA 392 :GLRYYYDKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53424 # 1tr0A.595.31 read from T0547.t2k.many.frag # found chain 1tr0A in training set T0547 595 :ELYLFLNDN 1tr0A 32 :DYTNLLDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53425 # 1khcA.595.120 read from T0547.t2k.many.frag # found chain 1khcA in training set Warning: unaligning (T0547)N603 (1khcA)F347 because L (left) conformation "forbidden" or filtered. T0547 595 :ELYLFLND 1khcA 339 :MLEWAHGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=53426 # 1kxu.595.285 read from T0547.t2k.many.frag # found chain 1kxu in template set Warning: unaligning (T0547)N603 (1kxu)E284 because L (left) conformation "forbidden" or filtered. T0547 595 :ELYLFLND 1kxu 276 :KLERCHSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=53427 # 1usyA.595.207 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 595 :ELYLFLNDN 1usyA 208 :ASSFLQEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53428 1xm9A expands to /projects/compbio/data/pdb/1xm9.pdb.gz 1xm9A:# 1xm9A.595.438 read from T0547.t2k.many.frag # adding 1xm9A to template set # found chain 1xm9A in template set T0547 595 :ELYLFLNDN 1xm9A 682 :AARLLLSDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=53429 # 2fh5A.595.128 read from T0547.t2k.many.frag # found chain 2fh5A in template set T0547 595 :ELYLFLNDN 2fh5A 120 :LLREAEESS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53430 # 1lfpA.595.220 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 595 :ELYLFLNDN 1lfpA 221 :LLNALEELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53431 # 1yk3A.595.150 read from T0547.t2k.many.frag # found chain 1yk3A in template set T0547 595 :ELYLFLNDN 1yk3A 151 :IVASVFANE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53432 # 1zr6A.595.415 read from T0547.t2k.many.frag # found chain 1zr6A in training set Warning: unaligning (T0547)N603 (1zr6A)L418 because P (beta_P) conformation "forbidden" or filtered. T0547 595 :ELYLFLND 1zr6A 410 :FVATIEDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=53433 # 1if1A.595.79 read from T0547.t2k.many.frag # found chain 1if1A in template set T0547 595 :ELYLFLNDN 1if1A 80 :NFRCAMNSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53434 # 2a6sA.595.29 read from T0547.t2k.many.frag # found chain 2a6sA in training set Warning: unaligning (T0547)D602 (2a6sA)T37 because D (zeta) conformation "forbidden" or filtered. T0547 595 :ELYLFLN 2a6sA 30 :LIKDTRR T0547 603 :N 2a6sA 38 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=53436 # 1q7zA.595.490 read from T0547.t2k.many.frag # found chain 1q7zA in training set T0547 595 :ELYLFLNDN 1q7zA 491 :TIEFISSKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53437 # 1nekA.595.485 read from T0547.t2k.many.frag # found chain 1nekA in template set T0547 595 :ELYLFLNDN 1nekA 486 :QLKVIRERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53438 # 1lddA.595.52 read from T0547.t2k.many.frag # found chain 1lddA in template set T0547 595 :ELYLFLNDN 1lddA 825 :YLNTLADEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53439 1gakA expands to /projects/compbio/data/pdb/1gak.pdb.gz 1gakA:# 1gakA.595.100 read from T0547.t2k.many.frag # adding 1gakA to template set # found chain 1gakA in template set T0547 595 :ELYLFLNDN 1gakA 101 :LYADVFRDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53440 # 1t4fM.595.40 read from T0547.t2k.many.frag # found chain 1t4fM in template set T0547 595 :ELYLFLNDN 1t4fM 56 :YLGQYIMTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53441 # 1i24A.595.369 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 595 :ELYLFLNDN 1i24A 360 :LLNFAVQFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53442 # 1u7iA.596.95 read from T0547.t2k.many.frag # found chain 1u7iA in training set Warning: unaligning (T0547)D602 (1u7iA)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N603 (1u7iA)G101 because Y (epsilon') conformation "forbidden" or filtered. T0547 596 :LYLFLN 1u7iA 94 :AEALSD T0547 604 :G 1u7iA 102 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=53444 # 1oewA.596.230 read from T0547.t2k.many.frag # found chain 1oewA in training set T0547 596 :LYLFLNDNG 1oewA 231 :VSAYWAQVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53445 # 1ukfA.596.167 read from T0547.t2k.many.frag # found chain 1ukfA in training set Warning: unaligning (T0547)G604 (1ukfA)Y256 because D (zeta) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1ukfA 248 :IDHYNSLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=53446 # 1k8qA.596.331 read from T0547.t2k.many.frag # found chain 1k8qA in template set T0547 596 :LYLFLNDNG 1k8qA 332 :VDLLLSKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=53447 # 2ccmA.596.148 read from T0547.t2k.many.frag # found chain 2ccmA in training set Warning: unaligning (T0547)N601 (2ccmA)D154 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D602 (2ccmA)G155 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N603 (2ccmA)G156 because T (delta_L) conformation "forbidden" or filtered. T0547 596 :LYLFL 2ccmA 149 :FDTLS T0547 604 :G 2ccmA 157 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=53449 # 1vpbA.596.144 read from T0547.t2k.many.frag # found chain 1vpbA in training set Warning: unaligning (T0547)G604 (1vpbA)L141 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1vpbA 133 :AKAVAEEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=53450 # 1y71A.596.120 read from T0547.t2k.many.frag # found chain 1y71A in template set T0547 596 :LYLFLNDNG 1y71A 118 :LQQLKKDYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53451 # 1gkmA.596.464 read from T0547.t2k.many.frag # found chain 1gkmA in training set T0547 596 :LYLFLNDNG 1gkmA 465 :RQALRSEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53452 # 1wteA.596.242 read from T0547.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0547)G604 (1wteA)N251 because G (3-10) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1wteA 243 :KEHVAKKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=53453 # 1if1A.596.80 read from T0547.t2k.many.frag # found chain 1if1A in template set Warning: unaligning (T0547)G604 (1if1A)P89 because G (3-10) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1if1A 81 :FRCAMNSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=53454 # 1tr0A.596.32 read from T0547.t2k.many.frag # found chain 1tr0A in training set T0547 596 :LYLFLNDNG 1tr0A 33 :YTNLLDLIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=53455 # 1khcA.596.121 read from T0547.t2k.many.frag # found chain 1khcA in training set Warning: unaligning (T0547)N603 (1khcA)F347 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1khcA)K348 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLND 1khcA 340 :LEWAHGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=53456 # 2akoA.596.213 read from T0547.t2k.many.frag # found chain 2akoA in template set Warning: unaligning (T0547)G604 (2akoA)K222 because E (beta_S) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 2akoA 214 :AKFLLEHN Number of specific fragments extracted= 1 number of extra gaps= 1 total=53457 # 1usyA.596.208 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 596 :LYLFLNDNG 1usyA 209 :SSFLQEKFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=53458 # 1xm9A.596.439 read from T0547.t2k.many.frag # found chain 1xm9A in template set T0547 596 :LYLFLNDNG 1xm9A 683 :ARLLLSDMW Number of specific fragments extracted= 1 number of extra gaps= 0 total=53459 # 1yk3A.596.151 read from T0547.t2k.many.frag # found chain 1yk3A in template set T0547 596 :LYLFLNDNG 1yk3A 152 :VASVFANEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=53460 # 1zr6A.596.416 read from T0547.t2k.many.frag # found chain 1zr6A in training set Warning: unaligning (T0547)G604 (1zr6A)P419 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1zr6A 411 :VATIEDTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=53461 # 1lucA.596.339 read from T0547.t2k.many.frag # found chain 1lucA in training set T0547 596 :LYLFLNDNG 1lucA 340 :MKLFQSDVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=53462 # 1gakA.596.101 read from T0547.t2k.many.frag # found chain 1gakA in template set T0547 596 :LYLFLNDNG 1gakA 102 :YADVFRDVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53463 # 1lfpA.596.221 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 596 :LYLFLNDNG 1lfpA 222 :LNALEELDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53464 # 1c4rA.596.158 read from T0547.t2k.many.frag # found chain 1c4rA in template set T0547 596 :LYLFLNDNG 1c4rA 269 :LNMAAENDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53465 # 1gvjA.596.97 read from T0547.t2k.many.frag # found chain 1gvjA in training set T0547 596 :LYLFLNDNG 1gvjA 393 :LRYYYDKNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53466 # 2fh5A.596.129 read from T0547.t2k.many.frag # found chain 2fh5A in template set Warning: unaligning (T0547)G604 because last residue in template chain is (2fh5A)K129 T0547 596 :LYLFLNDN 2fh5A 121 :LREAEESS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53467 # 1wmhA.596.70 read from T0547.t2k.many.frag # found chain 1wmhA in training set Warning: unaligning (T0547)N603 (1wmhA)K88 because L (left) conformation "forbidden" or filtered. T0547 596 :LYLFLND 1wmhA 81 :FRLYELN T0547 604 :G 1wmhA 89 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=53469 # 1i24A.596.370 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 596 :LYLFLNDNG 1i24A 361 :LNFAVQFKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53470 # 1gvhA.596.307 read from T0547.t2k.many.frag # found chain 1gvhA in template set T0547 596 :LYLFLNDNG 1gvhA 308 :VKELGQSLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=53471 # 1h1nA.596.256 read from T0547.t2k.many.frag # found chain 1h1nA in training set T0547 596 :LYLFLNDNG 1h1nA 257 :LDYMAQNTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53472 # 1nekA.596.486 read from T0547.t2k.many.frag # found chain 1nekA in template set T0547 596 :LYLFLNDNG 1nekA 487 :LKVIRERLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53473 # 1i4wA.596.274 read from T0547.t2k.many.frag # found chain 1i4wA in template set T0547 596 :LYLFLNDNG 1i4wA 263 :TRHLMILKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53474 # 1a73A.596.11 read from T0547.t2k.many.frag # found chain 1a73A in training set T0547 596 :LYLFLNDNG 1a73A 12 :IDSWEETVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53475 # 1u7iA.597.96 read from T0547.t2k.many.frag # found chain 1u7iA in training set Warning: unaligning (T0547)G604 (1u7iA)K102 because E (beta_S) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1u7iA 95 :EALSDGG T0547 605 :Y 1u7iA 103 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=53477 # 1ukfA.597.168 read from T0547.t2k.many.frag # found chain 1ukfA in training set T0547 597 :YLFLNDNGY 1ukfA 249 :DHYNSLNYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53478 # 1oewA.597.231 read from T0547.t2k.many.frag # found chain 1oewA in training set T0547 597 :YLFLNDNGY 1oewA 232 :SAYWAQVSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53479 # 1k8qA.597.332 read from T0547.t2k.many.frag # found chain 1k8qA in template set T0547 597 :YLFLNDNGY 1k8qA 333 :DLLLSKLPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53480 # 1yk3A.597.152 read from T0547.t2k.many.frag # found chain 1yk3A in template set T0547 597 :YLFLNDNGY 1yk3A 153 :ASVFANEPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53481 # 2ccmA.597.149 read from T0547.t2k.many.frag # found chain 2ccmA in training set Warning: unaligning (T0547)N603 (2ccmA)G156 because T (delta_L) conformation "forbidden" or filtered. T0547 597 :YLFLND 2ccmA 150 :DTLSDG T0547 604 :GY 2ccmA 157 :KT Number of specific fragments extracted= 2 number of extra gaps= 1 total=53483 # 2akoA.597.214 read from T0547.t2k.many.frag # found chain 2akoA in template set Warning: unaligning (T0547)N603 (2akoA)N221 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (2akoA)K222 because E (beta_S) conformation "forbidden" or filtered. T0547 597 :YLFLND 2akoA 215 :KFLLEH T0547 605 :Y 2akoA 223 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=53485 # 1vpbA.597.145 read from T0547.t2k.many.frag # found chain 1vpbA in training set Warning: unaligning (T0547)Y605 (1vpbA)G142 because T (delta_L) conformation "forbidden" or filtered. T0547 597 :YLFLNDNG 1vpbA 134 :KAVAEEAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=53486 # 1tr0A.597.33 read from T0547.t2k.many.frag # found chain 1tr0A in training set T0547 597 :YLFLNDNGY 1tr0A 34 :TNLLDLIPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53487 # 1if1A.597.81 read from T0547.t2k.many.frag # found chain 1if1A in template set Warning: unaligning (T0547)G604 (1if1A)P89 because G (3-10) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1if1A 82 :RCAMNSL T0547 605 :Y 1if1A 90 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=53489 # 1gkmA.597.465 read from T0547.t2k.many.frag # found chain 1gkmA in training set Warning: unaligning (T0547)G604 (1gkmA)A473 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1gkmA 466 :QALRSEV T0547 605 :Y 1gkmA 474 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=53491 # 1r0rI.597.33 read from T0547.t2k.many.frag # found chain 1r0rI in training set Warning: unaligning (T0547)N603 (1r0rI)N45 because L (left) conformation "forbidden" or filtered. T0547 597 :YLFLND 1r0rI 39 :NAVVES T0547 604 :GY 1r0rI 46 :GT Number of specific fragments extracted= 2 number of extra gaps= 1 total=53493 # 1y71A.597.121 read from T0547.t2k.many.frag # found chain 1y71A in template set Warning: unaligning (T0547)Y605 because last residue in template chain is (1y71A)L127 T0547 597 :YLFLNDNG 1y71A 119 :QQLKKDYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53494 # 1c4rA.597.159 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)D602 (1c4rA)N275 because L (left) conformation "forbidden" or filtered. T0547 597 :YLFLN 1c4rA 270 :NMAAE T0547 603 :NGY 1c4rA 276 :DAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=53496 # 1wteA.597.243 read from T0547.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0547)G604 (1wteA)N251 because G (3-10) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1wteA 244 :EHVAKKY T0547 605 :Y 1wteA 252 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=53498 # 1gakA.597.102 read from T0547.t2k.many.frag # found chain 1gakA in template set T0547 597 :YLFLNDNGY 1gakA 103 :ADVFRDVQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53499 # 1i24A.597.371 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 597 :YLFLNDNGY 1i24A 362 :NFAVQFKDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53500 # 1usyA.597.209 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 597 :YLFLNDNGY 1usyA 210 :SFLQEKFPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53501 1txjA expands to /projects/compbio/data/pdb/1txj.pdb.gz 1txjA:# 1txjA.597.121 read from T0547.t2k.many.frag # adding 1txjA to template set # found chain 1txjA in template set T0547 597 :YLFLNDNGY 1txjA 122 :KHILTNFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53502 # 1xm9A.597.440 read from T0547.t2k.many.frag # found chain 1xm9A in template set T0547 597 :YLFLNDNGY 1xm9A 684 :RLLLSDMWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53503 # 1zr6A.597.417 read from T0547.t2k.many.frag # found chain 1zr6A in training set Warning: unaligning (T0547)N603 (1zr6A)L418 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1zr6A)P419 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLND 1zr6A 412 :ATIEDT T0547 605 :Y 1zr6A 420 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=53505 # 1hqsA.597.396 read from T0547.t2k.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)Y605 (1hqsA)G405 because L (left) conformation "forbidden" or filtered. T0547 597 :YLFLNDNG 1hqsA 397 :YDFARLMD Number of specific fragments extracted= 1 number of extra gaps= 1 total=53506 # 1lfpA.597.222 read from T0547.t2k.many.frag # found chain 1lfpA in training set T0547 597 :YLFLNDNGY 1lfpA 223 :NALEELDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53507 # 2fq4A.597.182 read from T0547.t2k.many.frag # found chain 2fq4A in training set Warning: unaligning (T0547)D602 (2fq4A)G188 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N603 (2fq4A)I189 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (2fq4A)R190 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLN 2fq4A 183 :INAFE T0547 605 :Y 2fq4A 191 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=53509 # 1wmhA.597.71 read from T0547.t2k.many.frag # found chain 1wmhA in training set Warning: unaligning (T0547)G604 (1wmhA)D89 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1wmhA 82 :RLYELNK T0547 605 :Y 1wmhA 90 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=53511 # 1omzA.597.260 read from T0547.t2k.many.frag # found chain 1omzA in template set Warning: unaligning (T0547)Y605 (1omzA)G306 because Y (epsilon') conformation "forbidden" or filtered. T0547 597 :YLFLNDNG 1omzA 298 :NKLVNIYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=53512 # 1xqwA.597.251 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)Y605 (1xqwA)G260 because T (delta_L) conformation "forbidden" or filtered. T0547 597 :YLFLNDNG 1xqwA 252 :RVIHEKIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=53513 # 1khcA.597.122 read from T0547.t2k.many.frag # found chain 1khcA in training set Warning: unaligning (T0547)D602 (1khcA)G346 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1khcA)P349 because C (cis) conformation "forbidden" or filtered. T0547 597 :YLFLN 1khcA 341 :EWAHG T0547 603 :NG 1khcA 347 :FK Number of specific fragments extracted= 2 number of extra gaps= 2 total=53515 # 1um0A.597.233 read from T0547.t2k.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)Y605 (1um0A)G242 because T (delta_L) conformation "forbidden" or filtered. T0547 597 :YLFLNDNG 1um0A 234 :AEAMMGLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=53516 1r6oC expands to /projects/compbio/data/pdb/1r6o.pdb.gz 1r6oC:# 1r6oC.597.88 read from T0547.t2k.many.frag # adding 1r6oC to template set # found chain 1r6oC in template set Warning: unaligning (T0547)N603 (1r6oC)N95 because G (3-10) conformation "forbidden" or filtered. T0547 597 :YLFLND 1r6oC 89 :NKYARE T0547 604 :GY 1r6oC 96 :EH Number of specific fragments extracted= 2 number of extra gaps= 1 total=53518 # 1oewA.598.232 read from T0547.t2k.many.frag # found chain 1oewA in training set T0547 598 :LFLNDNGYL 1oewA 233 :AYWAQVSGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53519 # 1u7iA.598.97 read from T0547.t2k.many.frag # found chain 1u7iA in training set Warning: unaligning (T0547)G604 (1u7iA)K102 because E (beta_S) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1u7iA 96 :ALSDGG T0547 605 :YL 1u7iA 103 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=53521 # 1ukfA.598.169 read from T0547.t2k.many.frag # found chain 1ukfA in training set T0547 598 :LFLNDNGYL 1ukfA 250 :HYNSLNYDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53522 # 1k8qA.598.333 read from T0547.t2k.many.frag # found chain 1k8qA in template set T0547 598 :LFLNDNGYL 1k8qA 334 :LLLSKLPNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53523 # 1r0rI.598.34 read from T0547.t2k.many.frag # found chain 1r0rI in training set Warning: unaligning (T0547)N603 (1r0rI)N45 because L (left) conformation "forbidden" or filtered. T0547 598 :LFLND 1r0rI 40 :AVVES T0547 604 :GYL 1r0rI 46 :GTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=53525 # 1tr0A.598.34 read from T0547.t2k.many.frag # found chain 1tr0A in training set T0547 598 :LFLNDNGYL 1tr0A 35 :NLLDLIPSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=53526 # 1if1A.598.82 read from T0547.t2k.many.frag # found chain 1if1A in template set T0547 598 :LFLNDNGYL 1if1A 83 :CAMNSLPDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53527 # 1yk3A.598.153 read from T0547.t2k.many.frag # found chain 1yk3A in template set T0547 598 :LFLNDNGYL 1yk3A 154 :SVFANEPRC Number of specific fragments extracted= 1 number of extra gaps= 0 total=53528 # 1vpbA.598.146 read from T0547.t2k.many.frag # found chain 1vpbA in training set Warning: unaligning (T0547)G604 (1vpbA)L141 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1vpbA 135 :AVAEEA T0547 605 :YL 1vpbA 142 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=53530 # 1txjA.598.122 read from T0547.t2k.many.frag # found chain 1txjA in template set T0547 598 :LFLNDNGYL 1txjA 123 :HILTNFDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53531 # 1um0A.598.234 read from T0547.t2k.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)G604 (1um0A)N241 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1um0A 235 :EAMMGL T0547 605 :YL 1um0A 242 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=53533 # 1usyA.598.210 read from T0547.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)Y605 (1usyA)T218 because G (3-10) conformation "forbidden" or filtered. T0547 598 :LFLNDNG 1usyA 211 :FLQEKFP T0547 606 :L 1usyA 219 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=53535 # 1c4rA.598.160 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)D602 (1c4rA)N275 because L (left) conformation "forbidden" or filtered. T0547 598 :LFLN 1c4rA 271 :MAAE T0547 603 :NGYL 1c4rA 276 :DANI Number of specific fragments extracted= 2 number of extra gaps= 1 total=53537 # 1gkmA.598.466 read from T0547.t2k.many.frag # found chain 1gkmA in training set Warning: unaligning (T0547)G604 (1gkmA)A473 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1gkmA 467 :ALRSEV T0547 605 :YL 1gkmA 474 :HY Number of specific fragments extracted= 2 number of extra gaps= 1 total=53539 # 1gakA.598.103 read from T0547.t2k.many.frag # found chain 1gakA in template set T0547 598 :LFLNDNGYL 1gakA 104 :DVFRDVQGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53540 # 1xqwA.598.252 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)Y605 (1xqwA)G260 because T (delta_L) conformation "forbidden" or filtered. T0547 598 :LFLNDNG 1xqwA 253 :VIHEKIA T0547 606 :L 1xqwA 261 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=53542 # 1hqsA.598.397 read from T0547.t2k.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)N603 (1hqsA)M403 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1hqsA)D404 because E (beta_S) conformation "forbidden" or filtered. T0547 598 :LFLND 1hqsA 398 :DFARL T0547 605 :YL 1hqsA 405 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=53544 # 1i24A.598.372 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 598 :LFLNDNGYL 1i24A 363 :FAVQFKDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53545 # 1gvhA.598.309 read from T0547.t2k.many.frag # found chain 1gvhA in template set T0547 598 :LFLNDNGYL 1gvhA 310 :ELGQSLPRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53546 # 2akoA.598.215 read from T0547.t2k.many.frag # found chain 2akoA in template set T0547 598 :LFLNDNGYL 2akoA 216 :FLLEHNKKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=53547 1amx expands to /projects/compbio/data/pdb/1amx.pdb.gz 1amx:Warning: there is no chain 1amx will retry with 1amxA # 1amx.598.103 read from T0547.t2k.many.frag # adding 1amx to template set # found chain 1amx in template set T0547 598 :LFLNDNGYL 1amx 242 :DFEKAFPGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53548 # 1omzA.598.261 read from T0547.t2k.many.frag # found chain 1omzA in template set T0547 598 :LFLNDNGYL 1omzA 299 :KLVNIYDGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=53549 # 1xm9A.598.441 read from T0547.t2k.many.frag # found chain 1xm9A in template set Warning: unaligning (T0547)G604 (1xm9A)W691 because G (3-10) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1xm9A 685 :LLLSDM T0547 605 :YL 1xm9A 692 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=53551 # 1wteA.598.244 read from T0547.t2k.many.frag # found chain 1wteA in template set T0547 598 :LFLNDNGYL 1wteA 245 :HVAKKYNEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53552 1wrrA expands to /projects/compbio/data/pdb/1wrr.pdb.gz 1wrrA:Bad short name: C1A for alphabet: pdb_atoms Bad short name: C2A for alphabet: pdb_atoms Bad short name: OAC for alphabet: pdb_atoms Skipped atom 339, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 341, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 343, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 345, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 347, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 907, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 909, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 911, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 913, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 915, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 988, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 990, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 992, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 994, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 996, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 998, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 1000, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 1002, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 1004, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 1006, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 1008, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 1010, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 1012, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 1014, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 1877, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 1879, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 1881, because occupancy 0.500 <= existing 0.500 in 1wrrA Skipped atom 2361, because occupancy 0.500 <= existing 0.500 in 1wrrA # 1wrrA.598.236 read from T0547.t2k.many.frag # adding 1wrrA to template set # found chain 1wrrA in template set T0547 598 :LFLNDNGYL 1wrrA 237 :QILARQQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53553 1vqoM expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoM:# 1vqoM.598.104 read from T0547.t2k.many.frag # adding 1vqoM to template set # found chain 1vqoM in template set T0547 598 :LFLNDNGYL 1vqoM 104 :RASRTFPNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53554 # 1a73A.598.13 read from T0547.t2k.many.frag # found chain 1a73A in training set T0547 598 :LFLNDNGYL 1a73A 14 :SWEETVGQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53555 # 2ccmA.598.150 read from T0547.t2k.many.frag # found chain 2ccmA in training set T0547 598 :LFLNDNGYL 2ccmA 151 :TLSDGGKTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=53556 # 1mc2A.598.94 read from T0547.t2k.many.frag # found chain 1mc2A in training set T0547 598 :LFLNDNGYL 1mc2A 1105 :CLRENLDTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53557 # 1u8xX.598.451 read from T0547.t2k.many.frag # found chain 1u8xX in template set T0547 598 :LFLNDNGYL 1u8xX 429 :DLVEANKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53558 # 1oewA.599.233 read from T0547.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)Y605 (1oewA)G240 because G (3-10) conformation "forbidden" or filtered. T0547 599 :FLNDNG 1oewA 234 :YWAQVS T0547 606 :LK 1oewA 241 :AK Number of specific fragments extracted= 2 number of extra gaps= 1 total=53560 # 1u7iA.599.98 read from T0547.t2k.many.frag # found chain 1u7iA in training set Warning: unaligning (T0547)D602 (1u7iA)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N603 (1u7iA)G101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1u7iA)K102 because E (beta_S) conformation "forbidden" or filtered. T0547 599 :FLN 1u7iA 97 :LSD T0547 605 :YLK 1u7iA 103 :ALM Number of specific fragments extracted= 2 number of extra gaps= 1 total=53562 # 1ukfA.599.170 read from T0547.t2k.many.frag # found chain 1ukfA in training set Warning: unaligning (T0547)G604 (1ukfA)Y256 because D (zeta) conformation "forbidden" or filtered. T0547 599 :FLNDN 1ukfA 251 :YNSLN T0547 605 :YLK 1ukfA 257 :DVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=53564 # 1r0rI.599.35 read from T0547.t2k.many.frag # found chain 1r0rI in training set Warning: unaligning (T0547)N603 (1r0rI)N45 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1r0rI)T49 because E (beta_S) conformation "forbidden" or filtered. T0547 599 :FLND 1r0rI 41 :VVES T0547 604 :GYL 1r0rI 46 :GTL Number of specific fragments extracted= 2 number of extra gaps= 2 total=53566 # 1k8qA.599.334 read from T0547.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)N603 (1k8qA)L339 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1k8qA)I343 because G (3-10) conformation "forbidden" or filtered. T0547 599 :FLND 1k8qA 335 :LLSK T0547 604 :GYL 1k8qA 340 :PNL Number of specific fragments extracted= 2 number of extra gaps= 2 total=53568 # 1um0A.599.235 read from T0547.t2k.many.frag # found chain 1um0A in template set T0547 599 :FLNDNGYLK 1um0A 236 :AMMGLNGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53569 # 1txjA.599.123 read from T0547.t2k.many.frag # found chain 1txjA in template set T0547 599 :FLNDNGYLK 1txjA 124 :ILTNFDDFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53570 # 1yk3A.599.154 read from T0547.t2k.many.frag # found chain 1yk3A in template set T0547 599 :FLNDNGYLK 1yk3A 155 :VFANEPRCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53571 # 1tr0A.599.35 read from T0547.t2k.many.frag # found chain 1tr0A in training set T0547 599 :FLNDNGYLK 1tr0A 36 :LLDLIPSMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53572 # 1wrrA.599.237 read from T0547.t2k.many.frag # found chain 1wrrA in template set T0547 599 :FLNDNGYLK 1wrrA 238 :ILARQQLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53573 # 1hqsA.599.398 read from T0547.t2k.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)G604 (1hqsA)D404 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1hqsA)T407 because N (gamma') conformation "forbidden" or filtered. T0547 599 :FLNDN 1hqsA 399 :FARLM T0547 605 :YL 1hqsA 405 :GA Number of specific fragments extracted= 2 number of extra gaps= 2 total=53575 # 1vqoM.599.105 read from T0547.t2k.many.frag # found chain 1vqoM in template set T0547 599 :FLNDNGYLK 1vqoM 105 :ASRTFPNLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53576 # 1xqwA.599.253 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)G604 (1xqwA)A259 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1xqwA)G260 because T (delta_L) conformation "forbidden" or filtered. T0547 599 :FLNDN 1xqwA 254 :IHEKI T0547 606 :LK 1xqwA 261 :SE Number of specific fragments extracted= 2 number of extra gaps= 1 total=53578 # 1c4rA.599.161 read from T0547.t2k.many.frag # found chain 1c4rA in template set T0547 599 :FLNDNGYLK 1c4rA 272 :AAENDANIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53579 # 1gakA.599.104 read from T0547.t2k.many.frag # found chain 1gakA in template set T0547 599 :FLNDNGYLK 1gakA 105 :VFRDVQGFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53580 # 1amx.599.104 read from T0547.t2k.many.frag # found chain 1amx in template set Warning: unaligning (T0547)G604 (1amx)P248 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1amx)G249 because T (delta_L) conformation "forbidden" or filtered. T0547 599 :FLNDN 1amx 243 :FEKAF T0547 606 :LK 1amx 250 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=53582 # 1if1A.599.83 read from T0547.t2k.many.frag # found chain 1if1A in template set T0547 599 :FLNDNGYLK 1if1A 84 :AMNSLPDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53583 # 1zkoA.599.39 read from T0547.t2k.many.frag # found chain 1zkoA in training set Warning: unaligning (T0547)K607 (1zkoA)V36 because G (3-10) conformation "forbidden" or filtered. T0547 599 :FLNDNGYL 1zkoA 28 :AQEQLGDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=53584 # 1w23A.599.277 read from T0547.t2k.many.frag # found chain 1w23A in training set T0547 599 :FLNDNGYLK 1w23A 278 :IDESNGFYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53585 # 1gvhA.599.310 read from T0547.t2k.many.frag # found chain 1gvhA in template set Warning: unaligning (T0547)N603 (1gvhA)L315 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLND 1gvhA 311 :LGQS T0547 604 :GYLK 1gvhA 316 :PRFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=53587 # 1a73A.599.14 read from T0547.t2k.many.frag # found chain 1a73A in training set T0547 599 :FLNDNGYLK 1a73A 15 :WEETVGQFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=53588 # 1dp7P.599.46 read from T0547.t2k.many.frag # found chain 1dp7P in training set T0547 599 :FLNDNGYLK 1dp7P 47 :IRSVFMGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53589 # 1usyA.599.211 read from T0547.t2k.many.frag # found chain 1usyA in template set T0547 599 :FLNDNGYLK 1usyA 212 :LQEKFPTVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53590 # 1nvmB.599.233 read from T0547.t2k.many.frag # found chain 1nvmB in training set T0547 599 :FLNDNGYLK 1nvmB 234 :VQAYVPGYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53591 # 1i24A.599.373 read from T0547.t2k.many.frag # found chain 1i24A in template set T0547 599 :FLNDNGYLK 1i24A 364 :AVQFKDRVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53592 # 1m0wA.599.371 read from T0547.t2k.many.frag # found chain 1m0wA in training set T0547 599 :FLNDNGYLK 1m0wA 372 :ALSEPSKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53593 # 1tjxA.599.130 read from T0547.t2k.many.frag # found chain 1tjxA in training set Warning: unaligning (T0547)N603 (1tjxA)P397 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLND 1tjxA 393 :MLAN T0547 604 :GYLK 1tjxA 398 :RRPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=53595 # 1kzfA.599.169 read from T0547.t2k.many.frag # found chain 1kzfA in training set T0547 599 :FLNDNGYLK 1kzfA 150 :LTRSGWQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53596 # 1gkmA.599.467 read from T0547.t2k.many.frag # found chain 1gkmA in training set Warning: unaligning (T0547)G604 (1gkmA)A473 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLNDN 1gkmA 468 :LRSEV T0547 605 :YLK 1gkmA 474 :HYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=53598 # 1mc2A.599.95 read from T0547.t2k.many.frag # found chain 1mc2A in training set T0547 599 :FLNDNGYLK 1mc2A 1106 :LRENLDTYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53599 # 1oewA.600.234 read from T0547.t2k.many.frag # found chain 1oewA in training set T0547 600 :LNDNGYLKS 1oewA 235 :WAQVSGAKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53600 # 1txjA.600.124 read from T0547.t2k.many.frag # found chain 1txjA in template set Warning: unaligning (T0547)K607 (1txjA)E132 because E (beta_S) conformation "forbidden" or filtered. T0547 600 :LNDNGYL 1txjA 125 :LTNFDDF T0547 608 :S 1txjA 133 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=53602 # 1um0A.600.236 read from T0547.t2k.many.frag # found chain 1um0A in template set T0547 600 :LNDNGYLKS 1um0A 237 :MMGLNGVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53603 # 1r0rI.600.36 read from T0547.t2k.many.frag # found chain 1r0rI in training set Warning: unaligning (T0547)N603 (1r0rI)N45 because L (left) conformation "forbidden" or filtered. T0547 600 :LND 1r0rI 42 :VES T0547 604 :GYLKS 1r0rI 46 :GTLTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=53605 # 1ukfA.600.171 read from T0547.t2k.many.frag # found chain 1ukfA in training set Warning: unaligning (T0547)N603 (1ukfA)N255 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1ukfA)Y256 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1ukfA)C260 because Y (epsilon') conformation "forbidden" or filtered. T0547 600 :LND 1ukfA 252 :NSL T0547 605 :YLK 1ukfA 257 :DVA Number of specific fragments extracted= 2 number of extra gaps= 2 total=53607 # 1k8qA.600.335 read from T0547.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)N603 (1k8qA)L339 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1k8qA)I343 because G (3-10) conformation "forbidden" or filtered. T0547 600 :LND 1k8qA 336 :LSK T0547 604 :GYL 1k8qA 340 :PNL T0547 608 :S 1k8qA 344 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=53610 # 1u7iA.600.99 read from T0547.t2k.many.frag # found chain 1u7iA in training set Warning: unaligning (T0547)G604 (1u7iA)K102 because E (beta_S) conformation "forbidden" or filtered. T0547 600 :LNDN 1u7iA 98 :SDGG T0547 605 :YLKS 1u7iA 103 :ALMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=53612 # 1zkoA.600.40 read from T0547.t2k.many.frag # found chain 1zkoA in training set T0547 600 :LNDNGYLKS 1zkoA 29 :QEQLGDVVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53613 # 1vqoM.600.106 read from T0547.t2k.many.frag # found chain 1vqoM in template set T0547 600 :LNDNGYLKS 1vqoM 106 :SRTFPNLRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53614 # 1xqwA.600.254 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)G604 (1xqwA)A259 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LNDN 1xqwA 255 :HEKI T0547 605 :YLKS 1xqwA 260 :GSEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=53616 # 1tr0A.600.36 read from T0547.t2k.many.frag # found chain 1tr0A in training set T0547 600 :LNDNGYLKS 1tr0A 37 :LDLIPSMKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53617 # 1wrrA.600.238 read from T0547.t2k.many.frag # found chain 1wrrA in template set Warning: unaligning (T0547)Y605 (1wrrA)L244 because G (3-10) conformation "forbidden" or filtered. T0547 600 :LNDNG 1wrrA 239 :LARQQ T0547 606 :LKS 1wrrA 245 :IET Number of specific fragments extracted= 2 number of extra gaps= 1 total=53619 # 1hqsA.600.399 read from T0547.t2k.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)N603 (1hqsA)M403 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1hqsA)D404 because E (beta_S) conformation "forbidden" or filtered. T0547 600 :LND 1hqsA 400 :ARL T0547 605 :YLKS 1hqsA 405 :GATE Number of specific fragments extracted= 2 number of extra gaps= 1 total=53621 # 1c4rA.600.162 read from T0547.t2k.many.frag # found chain 1c4rA in template set T0547 600 :LNDNGYLKS 1c4rA 273 :AENDANIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53622 # 1yk3A.600.155 read from T0547.t2k.many.frag # found chain 1yk3A in template set Warning: unaligning (T0547)K607 (1yk3A)R163 because G (3-10) conformation "forbidden" or filtered. T0547 600 :LNDNGYL 1yk3A 156 :FANEPRC T0547 608 :S 1yk3A 164 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=53624 # 1gvhA.600.311 read from T0547.t2k.many.frag # found chain 1gvhA in template set Warning: unaligning (T0547)K607 (1gvhA)T319 because E (beta_S) conformation "forbidden" or filtered. T0547 600 :LNDNGYL 1gvhA 312 :GQSLPRF T0547 608 :S 1gvhA 320 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=53626 # 1m0wA.600.372 read from T0547.t2k.many.frag # found chain 1m0wA in training set T0547 600 :LNDNGYLKS 1m0wA 373 :LSEPSKYVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53627 # 1amx.600.105 read from T0547.t2k.many.frag # found chain 1amx in template set Warning: unaligning (T0547)Y605 (1amx)G249 because T (delta_L) conformation "forbidden" or filtered. T0547 600 :LNDNG 1amx 244 :EKAFP T0547 606 :LKS 1amx 250 :SKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=53629 # 1w23A.600.278 read from T0547.t2k.many.frag # found chain 1w23A in training set T0547 600 :LNDNGYLKS 1w23A 279 :DESNGFYVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53630 # 1gakA.600.105 read from T0547.t2k.many.frag # found chain 1gakA in template set Warning: unaligning (T0547)Y605 (1gakA)G111 because Y (epsilon') conformation "forbidden" or filtered. T0547 600 :LNDNG 1gakA 106 :FRDVQ T0547 606 :LKS 1gakA 112 :FRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=53632 # 1s99A.600.174 read from T0547.t2k.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)N603 (1s99A)T178 because E (beta_S) conformation "forbidden" or filtered. T0547 600 :LND 1s99A 175 :EQQ T0547 604 :GYLKS 1s99A 179 :NHITM Number of specific fragments extracted= 2 number of extra gaps= 1 total=53634 # 1rkiA.600.60 read from T0547.t2k.many.frag # found chain 1rkiA in training set T0547 600 :LNDNGYLKS 1rkiA 61 :KKLVKNIEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=53635 # 1tjxA.600.131 read from T0547.t2k.many.frag # found chain 1tjxA in training set T0547 600 :LNDNGYLKS 1tjxA 394 :LANPRRPIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53636 # 1if1A.600.84 read from T0547.t2k.many.frag # found chain 1if1A in template set Warning: unaligning (T0547)G604 (1if1A)P89 because G (3-10) conformation "forbidden" or filtered. T0547 600 :LNDN 1if1A 85 :MNSL T0547 605 :YLKS 1if1A 90 :DIEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=53638 # 1dp7P.600.47 read from T0547.t2k.many.frag # found chain 1dp7P in training set Warning: unaligning (T0547)G604 (1dp7P)M52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1dp7P)G53 because T (delta_L) conformation "forbidden" or filtered. T0547 600 :LNDN 1dp7P 48 :RSVF T0547 606 :LKS 1dp7P 54 :LRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=53640 # 1vrmA.600.178 read from T0547.t2k.many.frag # found chain 1vrmA in training set T0547 600 :LNDNGYLKS 1vrmA 206 :LSFDENATG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53641 # 1a73A.600.15 read from T0547.t2k.many.frag # found chain 1a73A in training set T0547 600 :LNDNGYLKS 1a73A 16 :EETVGQFPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53642 # 1jfbA.600.370 read from T0547.t2k.many.frag # found chain 1jfbA in training set T0547 600 :LNDNGYLKS 1jfbA 370 :YQKFPDLKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53643 1qqrA expands to /projects/compbio/data/pdb/1qqr.pdb.gz 1qqrA:# 1qqrA.600.57 read from T0547.t2k.many.frag # adding 1qqrA to template set # found chain 1qqrA in template set Warning: unaligning (T0547)Y605 (1qqrA)G213 because T (delta_L) conformation "forbidden" or filtered. T0547 600 :LNDNG 1qqrA 208 :NKNHP T0547 606 :LKS 1qqrA 214 :YTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=53645 # 1nvmB.600.234 read from T0547.t2k.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)S608 (1nvmB)L243 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LNDNGYLK 1nvmB 235 :QAYVPGYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=53646 # 1txjA.601.125 read from T0547.t2k.many.frag # found chain 1txjA in template set T0547 601 :NDNGYLKSI 1txjA 126 :TNFDDFEFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53647 # 1oewA.601.235 read from T0547.t2k.many.frag # found chain 1oewA in training set T0547 601 :NDNGYLKSI 1oewA 236 :AQVSGAKSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53648 # 1um0A.601.237 read from T0547.t2k.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)Y605 (1um0A)G242 because T (delta_L) conformation "forbidden" or filtered. T0547 601 :NDNG 1um0A 238 :MGLN T0547 606 :LKSI 1um0A 243 :VKAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=53650 # 1r0rI.601.37 read from T0547.t2k.many.frag # found chain 1r0rI in training set Warning: unaligning (T0547)N603 (1r0rI)N45 because L (left) conformation "forbidden" or filtered. T0547 601 :ND 1r0rI 43 :ES T0547 604 :GYLKSI 1r0rI 46 :GTLTLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=53652 # 1vqoM.601.107 read from T0547.t2k.many.frag # found chain 1vqoM in template set T0547 601 :NDNGYLKSI 1vqoM 107 :RTFPNLRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53653 # 1zkoA.601.41 read from T0547.t2k.many.frag # found chain 1zkoA in training set T0547 601 :NDNGYLKSI 1zkoA 30 :EQLGDVVYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53654 # 1k8qA.601.336 read from T0547.t2k.many.frag # found chain 1k8qA in template set T0547 601 :NDNGYLKSI 1k8qA 337 :SKLPNLIYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=53655 # 1wrrA.601.239 read from T0547.t2k.many.frag # found chain 1wrrA in template set T0547 601 :NDNGYLKSI 1wrrA 240 :ARQQLIETV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53656 # 1ukfA.601.172 read from T0547.t2k.many.frag # found chain 1ukfA in training set Warning: unaligning (T0547)G604 (1ukfA)Y256 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1ukfA)C260 because Y (epsilon') conformation "forbidden" or filtered. T0547 601 :NDN 1ukfA 253 :SLN T0547 605 :YLK 1ukfA 257 :DVA T0547 609 :I 1ukfA 261 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=53659 # 1xqwA.601.255 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)G604 (1xqwA)A259 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :NDN 1xqwA 256 :EKI T0547 605 :YLKSI 1xqwA 260 :GSELH Number of specific fragments extracted= 2 number of extra gaps= 1 total=53661 # 1hqsA.601.400 read from T0547.t2k.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)G604 (1hqsA)D404 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1hqsA)G405 because L (left) conformation "forbidden" or filtered. T0547 601 :NDN 1hqsA 401 :RLM T0547 606 :LKSI 1hqsA 406 :ATEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=53663 # 1yk3A.601.156 read from T0547.t2k.many.frag # found chain 1yk3A in template set Warning: unaligning (T0547)S608 (1yk3A)R164 because Y (epsilon') conformation "forbidden" or filtered. T0547 601 :NDNGYLK 1yk3A 157 :ANEPRCR T0547 609 :I 1yk3A 165 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=53665 # 1tr0A.601.37 read from T0547.t2k.many.frag # found chain 1tr0A in training set T0547 601 :NDNGYLKSI 1tr0A 38 :DLIPSMKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53666 # 1amx.601.106 read from T0547.t2k.many.frag # found chain 1amx in template set Warning: unaligning (T0547)G604 (1amx)P248 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1amx)G249 because T (delta_L) conformation "forbidden" or filtered. T0547 601 :NDN 1amx 245 :KAF T0547 606 :LKSI 1amx 250 :SKIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=53668 # 1gvhA.601.312 read from T0547.t2k.many.frag # found chain 1gvhA in template set T0547 601 :NDNGYLKSI 1gvhA 313 :QSLPRFTAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=53669 # 1m0wA.601.373 read from T0547.t2k.many.frag # found chain 1m0wA in training set Warning: unaligning (T0547)D602 (1m0wA)E375 because D (zeta) conformation "forbidden" or filtered. T0547 601 :N 1m0wA 374 :S T0547 603 :NGYLKSI 1m0wA 376 :PSKYVLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=53671 # 1u7iA.601.100 read from T0547.t2k.many.frag # found chain 1u7iA in training set Warning: unaligning (T0547)D602 (1u7iA)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N603 (1u7iA)G101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1u7iA)P106 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :N 1u7iA 99 :D T0547 604 :GYLK 1u7iA 102 :KALM T0547 609 :I 1u7iA 107 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=53674 # 1vrmA.601.179 read from T0547.t2k.many.frag # found chain 1vrmA in training set T0547 601 :NDNGYLKSI 1vrmA 207 :SFDENATGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53675 # 1c4rA.601.163 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)D602 (1c4rA)N275 because L (left) conformation "forbidden" or filtered. T0547 601 :N 1c4rA 274 :E T0547 603 :NGYLKSI 1c4rA 276 :DANIAIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=53677 # 1qqrA.601.58 read from T0547.t2k.many.frag # found chain 1qqrA in template set Warning: unaligning (T0547)G604 (1qqrA)P212 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :NDN 1qqrA 209 :KNH T0547 605 :YLKSI 1qqrA 213 :GYTIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=53679 # 1jfbA.601.371 read from T0547.t2k.many.frag # found chain 1jfbA in training set T0547 601 :NDNGYLKSI 1jfbA 371 :QKFPDLKVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=53680 # 1dp7P.601.48 read from T0547.t2k.many.frag # found chain 1dp7P in training set T0547 601 :NDNGYLKSI 1dp7P 49 :SVFMGLRTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53681 # 1s99A.601.175 read from T0547.t2k.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)N603 (1s99A)T178 because E (beta_S) conformation "forbidden" or filtered. T0547 601 :ND 1s99A 176 :QQ T0547 604 :GYLKSI 1s99A 179 :NHITMT Number of specific fragments extracted= 2 number of extra gaps= 1 total=53683 # 1ze3D.601.94 read from T0547.t2k.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)Y605 (1ze3D)D99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1ze3D)T101 because E (beta_S) conformation "forbidden" or filtered. T0547 601 :NDNG 1ze3D 95 :TMVQ T0547 606 :L 1ze3D 100 :A T0547 608 :SI 1ze3D 102 :AH Number of specific fragments extracted= 3 number of extra gaps= 2 total=53686 # 1w23A.601.279 read from T0547.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)S608 (1w23A)G287 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :NDNGYLK 1w23A 280 :ESNGFYV T0547 609 :I 1w23A 288 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=53688 2f1lA expands to /projects/compbio/data/pdb/2f1l.pdb.gz 2f1lA:Skipped atom 183, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 187, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 189, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 193, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 563, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 567, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 569, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 752, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 754, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 756, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 758, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 760, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 762, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 764, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 766, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 768, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 770, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 843, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 847, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 849, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 851, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 853, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 855, because occupancy 0.500 <= existing 0.500 in 2f1lA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2f1lA.601.90 read from T0547.t2k.many.frag # adding 2f1lA to template set # found chain 2f1lA in template set T0547 601 :NDNGYLKSI 2f1lA 79 :RTFTGYEIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=53689 # 1rkiA.601.61 read from T0547.t2k.many.frag # found chain 1rkiA in training set T0547 601 :NDNGYLKSI 1rkiA 62 :KLVKNIEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53690 # 1gakA.601.106 read from T0547.t2k.many.frag # found chain 1gakA in template set Warning: unaligning (T0547)S608 (1gakA)G114 because S (epsilon) conformation "forbidden" or filtered. T0547 601 :NDNGYLK 1gakA 107 :RDVQGFR T0547 609 :I 1gakA 115 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=53692 # 1v8yA.601.87 read from T0547.t2k.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)N601 (1v8yA)G88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D602 (1v8yA)L89 because E (beta_S) conformation "forbidden" or filtered. T0547 603 :NGYLKSI 1v8yA 90 :SGDLTYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=53693 2cu6A expands to /projects/compbio/data/pdb/2cu6.pdb.gz 2cu6A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2cu6A.601.68 read from T0547.t2k.many.frag # adding 2cu6A to template set # found chain 2cu6A in template set Warning: unaligning (T0547)N603 (2cu6A)L71 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :ND 2cu6A 69 :SR T0547 604 :GYLKSI 2cu6A 72 :PGVEEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=53695 # 1txjA.602.126 read from T0547.t2k.many.frag # found chain 1txjA in template set T0547 602 :DNGYLKSIG 1txjA 127 :NFDDFEFYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=53696 # 1um0A.602.238 read from T0547.t2k.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)G604 (1um0A)N241 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1um0A)E247 because E (beta_S) conformation "forbidden" or filtered. T0547 602 :DN 1um0A 239 :GL T0547 605 :YLKSI 1um0A 242 :GVKAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=53698 # 1vqoM.602.108 read from T0547.t2k.many.frag # found chain 1vqoM in template set Warning: unaligning (T0547)K607 (1vqoM)R113 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1vqoM)N116 because Y (epsilon') conformation "forbidden" or filtered. T0547 602 :DNGYL 1vqoM 108 :TFPNL T0547 608 :SI 1vqoM 114 :VL Number of specific fragments extracted= 2 number of extra gaps= 2 total=53700 # 1r0rI.602.38 read from T0547.t2k.many.frag # found chain 1r0rI in training set Warning: unaligning (T0547)K607 (1r0rI)T49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1r0rI)H52 because Y (epsilon') conformation "forbidden" or filtered. T0547 602 :DNGYL 1r0rI 44 :SNGTL T0547 608 :SI 1r0rI 50 :LS Number of specific fragments extracted= 2 number of extra gaps= 2 total=53702 # 1oewA.602.236 read from T0547.t2k.many.frag # found chain 1oewA in training set T0547 602 :DNGYLKSIG 1oewA 237 :QVSGAKSSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53703 # 1wrrA.602.240 read from T0547.t2k.many.frag # found chain 1wrrA in template set Warning: unaligning (T0547)Y605 (1wrrA)L244 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1wrrA)E249 because E (beta_S) conformation "forbidden" or filtered. T0547 602 :DNG 1wrrA 241 :RQQ T0547 606 :LKSI 1wrrA 245 :IETV Number of specific fragments extracted= 2 number of extra gaps= 2 total=53705 # 1zkoA.602.42 read from T0547.t2k.many.frag # found chain 1zkoA in training set Warning: unaligning (T0547)G604 (1zkoA)G33 because S (epsilon) conformation "forbidden" or filtered. T0547 602 :DN 1zkoA 31 :QL T0547 605 :YLKSIG 1zkoA 34 :DVVYVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=53707 # 1k8qA.602.337 read from T0547.t2k.many.frag # found chain 1k8qA in template set T0547 602 :DNGYLKSIG 1k8qA 338 :KLPNLIYHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=53708 # 1vrmA.602.180 read from T0547.t2k.many.frag # found chain 1vrmA in training set Warning: unaligning (T0547)S608 (1vrmA)G214 because S (epsilon) conformation "forbidden" or filtered. T0547 602 :DNGYLK 1vrmA 208 :FDENAT T0547 609 :IG 1vrmA 215 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=53710 # 1yk3A.602.157 read from T0547.t2k.many.frag # found chain 1yk3A in template set T0547 602 :DNGYLKSIG 1yk3A 158 :NEPRCRRIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=53711 # 1ukfA.602.173 read from T0547.t2k.many.frag # found chain 1ukfA in training set Warning: unaligning (T0547)S608 (1ukfA)C260 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1ukfA)N262 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :DNGYLK 1ukfA 254 :LNYDVA T0547 609 :I 1ukfA 261 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=53713 # 1hqsA.602.401 read from T0547.t2k.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)Y605 (1hqsA)G405 because L (left) conformation "forbidden" or filtered. T0547 602 :DNG 1hqsA 402 :LMD T0547 606 :LKSIG 1hqsA 406 :ATEVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=53715 # 1amx.602.107 read from T0547.t2k.many.frag # found chain 1amx in template set Warning: unaligning (T0547)G604 (1amx)P248 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :DN 1amx 246 :AF T0547 605 :YLKSIG 1amx 249 :GSKITV Number of specific fragments extracted= 2 number of extra gaps= 1 total=53717 # 1jfbA.602.372 read from T0547.t2k.many.frag # found chain 1jfbA in training set T0547 602 :DNGYLKSIG 1jfbA 372 :KFPDLKVAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53718 # 1xqwA.602.256 read from T0547.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)G604 (1xqwA)A259 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1xqwA)E262 because E (beta_S) conformation "forbidden" or filtered. T0547 602 :DN 1xqwA 257 :KI T0547 605 :YL 1xqwA 260 :GS T0547 608 :SIG 1xqwA 263 :LHV Number of specific fragments extracted= 3 number of extra gaps= 2 total=53721 # 1m0wA.602.374 read from T0547.t2k.many.frag # found chain 1m0wA in training set T0547 602 :DNGYLKSIG 1m0wA 375 :EPSKYVLKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=53722 # 1v8yA.602.88 read from T0547.t2k.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)N603 (1v8yA)S90 because E (beta_S) conformation "forbidden" or filtered. T0547 602 :D 1v8yA 89 :L T0547 604 :GYLKSIG 1v8yA 91 :GDLTYLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=53724 # 1tr0A.602.38 read from T0547.t2k.many.frag # found chain 1tr0A in training set T0547 602 :DNGYLKSIG 1tr0A 39 :LIPSMKSFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53725 # 1dp7P.602.49 read from T0547.t2k.many.frag # found chain 1dp7P in training set Warning: unaligning (T0547)G610 (1dp7P)R58 because D (zeta) conformation "forbidden" or filtered. T0547 602 :DNGYLKSI 1dp7P 50 :VFMGLRTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=53726 # 1qqrA.602.59 read from T0547.t2k.many.frag # found chain 1qqrA in template set T0547 602 :DNGYLKSIG 1qqrA 210 :NHPGYTIYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53727 # 1ze3D.602.95 read from T0547.t2k.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)G604 (1ze3D)Q98 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :DN 1ze3D 96 :MV T0547 605 :YLKSIG 1ze3D 99 :DATAHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=53729 # 2f1lA.602.91 read from T0547.t2k.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)G604 (2f1lA)T82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (2f1lA)E85 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :DN 2f1lA 80 :TF T0547 605 :YL 2f1lA 83 :GY T0547 608 :SIG 2f1lA 86 :ICI Number of specific fragments extracted= 3 number of extra gaps= 2 total=53732 # 1sr9A.602.490 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)G604 (1sr9A)R493 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1sr9A)P494 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1sr9A)R499 because Y (epsilon') conformation "forbidden" or filtered. T0547 602 :DN 1sr9A 491 :PV T0547 606 :LKSI 1sr9A 495 :LERI Number of specific fragments extracted= 2 number of extra gaps= 2 total=53734 # 1s99A.602.176 read from T0547.t2k.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)G610 (1s99A)V185 because E (beta_S) conformation "forbidden" or filtered. T0547 602 :DNGYLKSI 1s99A 177 :QTNHITMT Number of specific fragments extracted= 1 number of extra gaps= 1 total=53735 # 1c4rA.602.164 read from T0547.t2k.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)N603 (1c4rA)D276 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :D 1c4rA 275 :N T0547 604 :GYLKSIG 1c4rA 277 :ANIAIVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=53737 # 1nvmB.602.236 read from T0547.t2k.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)K607 (1nvmB)R242 because Y (epsilon') conformation "forbidden" or filtered. T0547 602 :DNGYL 1nvmB 237 :YVPGY T0547 608 :SIG 1nvmB 243 :LKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=53739 # 1u7iA.602.101 read from T0547.t2k.many.frag # found chain 1u7iA in training set Warning: unaligning (T0547)D602 (1u7iA)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N603 (1u7iA)G101 because Y (epsilon') conformation "forbidden" or filtered. T0547 604 :GYLKSIG 1u7iA 102 :KALMPLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=53740 # 1a12A.602.386 read from T0547.t2k.many.frag # found chain 1a12A in training set T0547 602 :DNGYLKSIG 1a12A 395 :QLENRVVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53741 # 1w23A.602.280 read from T0547.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)N603 (1w23A)N282 because L (left) conformation "forbidden" or filtered. T0547 602 :D 1w23A 281 :S T0547 604 :GYLKSIG 1w23A 283 :GFYVGHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=53743 # 1rkiA.602.62 read from T0547.t2k.many.frag # found chain 1rkiA in training set Warning: unaligning (T0547)Y605 (1rkiA)N66 because Y (epsilon') conformation "forbidden" or filtered. T0547 602 :DNG 1rkiA 63 :LVK T0547 606 :LKSIG 1rkiA 67 :IEIFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=53745 # 1txjA.603.127 read from T0547.t2k.many.frag # found chain 1txjA in template set Warning: unaligning (T0547)Y605 (1txjA)D130 because G (3-10) conformation "forbidden" or filtered. T0547 603 :NG 1txjA 128 :FD T0547 606 :LKSIGV 1txjA 131 :FEFYMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=53747 # 1um0A.603.239 read from T0547.t2k.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)Y605 (1um0A)G242 because T (delta_L) conformation "forbidden" or filtered. T0547 603 :NG 1um0A 240 :LN T0547 606 :LKSIGV 1um0A 243 :VKAVEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=53749 # 1vqoM.603.109 read from T0547.t2k.many.frag # found chain 1vqoM in template set T0547 603 :NGYLKSIGV 1vqoM 109 :FPNLRVLNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53750 # 1zkoA.603.43 read from T0547.t2k.many.frag # found chain 1zkoA in training set T0547 603 :NGYLKSIGV 1zkoA 32 :LGDVVYVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53751 # 1wrrA.603.241 read from T0547.t2k.many.frag # found chain 1wrrA in template set T0547 603 :NGYLKSIGV 1wrrA 242 :QQLIETVEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=53752 # 1v8yA.603.89 read from T0547.t2k.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)S608 (1v8yA)Y95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1v8yA)F97 because Y (epsilon') conformation "forbidden" or filtered. T0547 603 :NGYLK 1v8yA 90 :SGDLT T0547 609 :I 1v8yA 96 :L T0547 611 :V 1v8yA 98 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=53755 # 1r0rI.603.39 read from T0547.t2k.many.frag # found chain 1r0rI in training set Warning: unaligning (T0547)N603 (1r0rI)N45 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1r0rI)L50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1r0rI)H52 because Y (epsilon') conformation "forbidden" or filtered. T0547 604 :GYLK 1r0rI 46 :GTLT T0547 609 :I 1r0rI 51 :S T0547 611 :V 1r0rI 53 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=53758 # 1vrmA.603.181 read from T0547.t2k.many.frag # found chain 1vrmA in training set Warning: unaligning (T0547)Y605 (1vrmA)N211 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I609 (1vrmA)F215 because Y (epsilon') conformation "forbidden" or filtered. T0547 603 :NG 1vrmA 209 :DE T0547 606 :LKS 1vrmA 212 :ATG T0547 610 :GV 1vrmA 216 :VE Number of specific fragments extracted= 3 number of extra gaps= 2 total=53761 # 1oewA.603.237 read from T0547.t2k.many.frag # found chain 1oewA in training set T0547 603 :NGYLKSIGV 1oewA 238 :VSGAKSSSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53762 # 1ukfA.603.174 read from T0547.t2k.many.frag # found chain 1ukfA in training set Warning: unaligning (T0547)N603 (1ukfA)N255 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1ukfA)C260 because Y (epsilon') conformation "forbidden" or filtered. T0547 604 :GYLK 1ukfA 256 :YDVA T0547 609 :IGV 1ukfA 261 :VNE Number of specific fragments extracted= 2 number of extra gaps= 2 total=53764 # 1yk3A.603.158 read from T0547.t2k.many.frag # found chain 1yk3A in template set T0547 603 :NGYLKSIGV 1yk3A 159 :EPRCRRIMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53765 # 1sr9A.603.491 read from T0547.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)Y605 (1sr9A)P494 because C (cis) conformation "forbidden" or filtered. T0547 603 :NG 1sr9A 492 :VR T0547 606 :LKSIGV 1sr9A 495 :LERIRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=53767 # 1m0wA.603.375 read from T0547.t2k.many.frag # found chain 1m0wA in training set T0547 603 :NGYLKSIGV 1m0wA 376 :PSKYVLKPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=53768 # 1u7iA.603.102 read from T0547.t2k.many.frag # found chain 1u7iA in training set Warning: unaligning (T0547)G604 (1u7iA)K102 because E (beta_S) conformation "forbidden" or filtered. T0547 603 :N 1u7iA 101 :G T0547 605 :YLKSIGV 1u7iA 103 :ALMPLGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=53770 # 1k8qA.603.338 read from T0547.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)K607 (1k8qA)I343 because G (3-10) conformation "forbidden" or filtered. T0547 603 :NGYL 1k8qA 339 :LPNL T0547 608 :SIGV 1k8qA 344 :YHRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=53772 # 1jfbA.603.373 read from T0547.t2k.many.frag # found chain 1jfbA in training set T0547 603 :NGYLKSIGV 1jfbA 373 :FPDLKVAVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=53773 # 1tr0A.603.39 read from T0547.t2k.many.frag # found chain 1tr0A in training set Warning: unaligning (T0547)S608 (1tr0A)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 603 :NGYLK 1tr0A 40 :IPSMK T0547 609 :IGV 1tr0A 46 :FNW Number of specific fragments extracted= 2 number of extra gaps= 1 total=53775 # 1qqrA.603.60 read from T0547.t2k.many.frag # found chain 1qqrA in template set Warning: unaligning (T0547)G604 (1qqrA)P212 because P (beta_P) conformation "forbidden" or filtered. T0547 603 :N 1qqrA 211 :H T0547 605 :YLKSIGV 1qqrA 213 :GYTIYER Number of specific fragments extracted= 2 number of extra gaps= 1 total=53777 # 1rkiA.603.63 read from T0547.t2k.many.frag # found chain 1rkiA in training set T0547 603 :NGYLKSIGV 1rkiA 64 :VKNIEIFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53778 # 2f1lA.603.92 read from T0547.t2k.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)G604 (2f1lA)T82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (2f1lA)I88 because E (beta_S) conformation "forbidden" or filtered. T0547 603 :N 2f1lA 81 :F T0547 605 :YLKSI 2f1lA 83 :GYEIC T0547 611 :V 2f1lA 89 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=53781 # 1a12A.603.387 read from T0547.t2k.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)G604 (1a12A)E397 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1a12A)S403 because Y (epsilon') conformation "forbidden" or filtered. T0547 603 :N 1a12A 396 :L T0547 605 :YLKSI 1a12A 398 :NRVVL T0547 611 :V 1a12A 404 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=53784 # 2cu6A.603.70 read from T0547.t2k.many.frag # found chain 2cu6A in template set Warning: unaligning (T0547)K607 (2cu6A)E75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (2cu6A)E78 because P (beta_P) conformation "forbidden" or filtered. T0547 603 :NGYL 2cu6A 71 :LPGV T0547 608 :SI 2cu6A 76 :EV T0547 611 :V 2cu6A 79 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=53787 # 1amx.603.108 read from T0547.t2k.many.frag # found chain 1amx in template set Warning: unaligning (T0547)G610 (1amx)V254 because E (beta_S) conformation "forbidden" or filtered. T0547 603 :NGYLKSI 1amx 247 :FPGSKIT T0547 611 :V 1amx 255 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=53789 # 1dp7P.603.50 read from T0547.t2k.many.frag # found chain 1dp7P in training set Warning: unaligning (T0547)Y605 (1dp7P)G53 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1dp7P)R55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1dp7P)R58 because D (zeta) conformation "forbidden" or filtered. T0547 603 :NG 1dp7P 51 :FM T0547 606 :L 1dp7P 54 :L T0547 608 :SI 1dp7P 56 :TR T0547 611 :V 1dp7P 59 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=53793 # 1fyeA.603.181 read from T0547.t2k.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)G610 (1fyeA)G189 because N (gamma') conformation "forbidden" or filtered. T0547 603 :NGYLKSI 1fyeA 182 :APELTVI T0547 611 :V 1fyeA 190 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=53795 # 2f5tX.603.125 read from T0547.t2k.many.frag # found chain 2f5tX in training set T0547 603 :NGYLKSIGV 2f5tX 235 :FKESTLEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53796 # 1yovA.603.389 read from T0547.t2k.many.frag # found chain 1yovA in template set Warning: unaligning (T0547)G604 (1yovA)A388 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1yovA)F389 because G (3-10) conformation "forbidden" or filtered. T0547 603 :N 1yovA 387 :S T0547 606 :LKSIGV 1yovA 390 :LRVVRC Number of specific fragments extracted= 2 number of extra gaps= 1 total=53798 # 1nvmB.603.237 read from T0547.t2k.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)S608 (1nvmB)L243 because P (beta_P) conformation "forbidden" or filtered. T0547 603 :NGYLK 1nvmB 238 :VPGYR T0547 609 :IGV 1nvmB 244 :KQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=53800 # 1hqsA.603.402 read from T0547.t2k.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)N603 (1hqsA)M403 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1hqsA)G405 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1hqsA)E408 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1hqsA)K410 because P (beta_P) conformation "forbidden" or filtered. T0547 604 :G 1hqsA 404 :D T0547 606 :LK 1hqsA 406 :AT T0547 609 :I 1hqsA 409 :V T0547 611 :V 1hqsA 411 :C Number of specific fragments extracted= 4 number of extra gaps= 4 total=53804 # 1l9vA.603.212 read from T0547.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0547)K607 (1l9vA)A217 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1l9vA)T220 because Y (epsilon') conformation "forbidden" or filtered. T0547 603 :NGYL 1l9vA 213 :YNKF T0547 608 :SI 1l9vA 218 :VI T0547 611 :V 1l9vA 221 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=53807 # command:# Reading fragments from alignment file # Attempting to read fragment alignments from file T0547.t04.many.frag with CODEWEIGHT bystroff filtering # adding to alignment library never # T0547 read from T0547.t04.many.frag # 1dqgA.1.33 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G5 (1dqgA)K38 because P (beta_P) conformation "forbidden" or filtered. T0547 1 :MMDY 1dqgA 34 :AESQ T0547 6 :IDIW 1dqgA 39 :FRWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=53809 # 1zpvA.1.25 read from T0547.t04.many.frag # found chain 1zpvA in template set T0547 1 :MMDYGIDIW 1zpvA 23 :IAELGLNID Number of specific fragments extracted= 1 number of extra gaps= 0 total=53810 # 1wu7A.1.33 read from T0547.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)Y4 (1wu7A)F37 because G (3-10) conformation "forbidden" or filtered. T0547 1 :MMD 1wu7A 34 :AEA T0547 5 :GIDIW 1wu7A 38 :GFRRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=53812 # 1z90A.1.43 read from T0547.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)G5 (1z90A)K48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1z90A)Q50 because E (beta_S) conformation "forbidden" or filtered. T0547 1 :MMDY 1z90A 44 :IEWS T0547 6 :I 1z90A 49 :I T0547 8 :IW 1z90A 51 :TP Number of specific fragments extracted= 3 number of extra gaps= 2 total=53815 # 1xdpA.1.296 read from T0547.t04.many.frag # found chain 1xdpA in template set Warning: unaligning (T0547)G5 (1xdpA)N302 because G (3-10) conformation "forbidden" or filtered. T0547 1 :MMDY 1xdpA 298 :KDFI T0547 6 :IDIW 1xdpA 303 :FPNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=53817 # 1u9yA.1.16 read from T0547.t04.many.frag # found chain 1u9yA in template set T0547 1 :MMDYGIDIW 1u9yA 17 :AKLLNTKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=53818 # 1s4cA.1.25 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)G5 (1s4cA)D30 because N (gamma') conformation "forbidden" or filtered. T0547 1 :MMDY 1s4cA 26 :LNTL T0547 6 :IDIW 1s4cA 31 :LNAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=53820 # 2f86B.1.74 read from T0547.t04.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)D7 (2f86B)H420 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (2f86B)I422 because D (zeta) conformation "forbidden" or filtered. T0547 1 :MMDYGI 2f86B 414 :MLNPNV T0547 8 :I 2f86B 421 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=53822 # 1iomA.1.4 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)M2 (1iomA)G6 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D3 (1iomA)L7 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1iomA)L11 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1iomA)T13 because Y (epsilon') conformation "forbidden" or filtered. T0547 1 :M 1iomA 5 :R T0547 4 :YGI 1iomA 8 :EGV T0547 8 :I 1iomA 12 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=53825 # 1knmA.1.78 read from T0547.t04.many.frag # found chain 1knmA in training set T0547 1 :MMDYGIDIW 1knmA 79 :GDNQKWRLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=53826 # 1usyA.1.15 read from T0547.t04.many.frag # found chain 1usyA in template set T0547 1 :MMDYGIDIW 1usyA 16 :ATKKGFSPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53827 # 1w0nA.1.14 read from T0547.t04.many.frag # found chain 1w0nA in training set Warning: unaligning (T0547)D7 (1w0nA)K21 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1w0nA)G23 because Y (epsilon') conformation "forbidden" or filtered. T0547 1 :MMDYGI 1w0nA 15 :VEAENM T0547 8 :I 1w0nA 22 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=53829 # 2bduA.1.7 read from T0547.t04.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)G5 (2bduA)M12 because G (3-10) conformation "forbidden" or filtered. T0547 1 :MMDY 2bduA 8 :VHLK T0547 6 :IDIW 2bduA 13 :MPEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=53831 # 1dqgA.1.75 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 T0547 1 :MMDYGIDI 1dqgA 76 :SEYQKWEC Number of specific fragments extracted= 1 number of extra gaps= 1 total=53832 1b77A expands to /projects/compbio/data/pdb/1b77.pdb.gz 1b77A:# 1b77A.1.67 read from T0547.t04.many.frag # adding 1b77A to template set # found chain 1b77A in template set Warning: unaligning (T0547)D7 (1b77A)S74 because Y (epsilon') conformation "forbidden" or filtered. T0547 1 :MMDYGI 1b77A 68 :SDDAEI T0547 8 :IW 1b77A 75 :MH Number of specific fragments extracted= 2 number of extra gaps= 1 total=53834 # 1yq2A.1.277 read from T0547.t04.many.frag # found chain 1yq2A in template set T0547 1 :MMDYGIDIW 1yq2A 277 :LALENVEPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=53835 2atzA expands to /projects/compbio/data/pdb/2atz.pdb.gz 2atzA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2atzA.1.3 read from T0547.t04.many.frag # adding 2atzA to template set # found chain 2atzA in template set Warning: unaligning (T0547)G5 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2atzA)I9 Warning: unaligning (T0547)I6 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2atzA)I9 T0547 1 :MMDY 2atzA 4 :MELK T0547 7 :DIW 2atzA 10 :KID Number of specific fragments extracted= 2 number of extra gaps= 1 total=53837 # 1knmA.1.38 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)G5 (1knmA)Q43 because P (beta_P) conformation "forbidden" or filtered. T0547 1 :MMDY 1knmA 39 :GTNQ T0547 6 :IDIW 1knmA 44 :WAAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=53839 # 1j98A.1.3 read from T0547.t04.many.frag # found chain 1j98A in training set Warning: unaligning (T0547)G5 (1j98A)E8 because G (3-10) conformation "forbidden" or filtered. T0547 1 :MMDY 1j98A 4 :VESF T0547 6 :IDIW 1j98A 9 :LDHN Number of specific fragments extracted= 2 number of extra gaps= 1 total=53841 1odhA expands to /projects/compbio/data/pdb/1odh.pdb.gz 1odhA:# 1odhA.1.119 read from T0547.t04.many.frag # adding 1odhA to template set # found chain 1odhA in template set Warning: unaligning (T0547)M1 (1odhA)L120 because P (beta_P) conformation "forbidden" or filtered. T0547 2 :MDYGIDIW 1odhA 121 :KLIPCRGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=53842 # 1x9iA.1.10 read from T0547.t04.many.frag # found chain 1x9iA in training set T0547 1 :MMDYGIDIW 1x9iA 11 :WENYILRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53843 # 2b8eA.1.65 read from T0547.t04.many.frag # found chain 2b8eA in template set T0547 1 :MMDYGIDIW 2b8eA 472 :ALEHGIELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53844 # 1zz1A.1.87 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)D7 (1zz1A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 1 :MMDYGI 1zz1A 88 :SNLPTG T0547 8 :IW 1zz1A 95 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=53846 # 1wuiL.1.6 read from T0547.t04.many.frag # found chain 1wuiL in training set Warning: unaligning (T0547)G5 (1wuiL)P29 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1wuiL)I33 because Y (epsilon') conformation "forbidden" or filtered. T0547 1 :MMDY 1wuiL 25 :IVVD T0547 6 :IDI 1wuiL 30 :VTR Number of specific fragments extracted= 2 number of extra gaps= 2 total=53848 # 1rg8A.1.6 read from T0547.t04.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)D3 (1rg8A)L3 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G5 (1rg8A)P5 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1rg8A)N7 because Y (epsilon') conformation "forbidden" or filtered. T0547 1 :MM 1rg8A 1 :FN T0547 4 :Y 1rg8A 4 :P T0547 6 :I 1rg8A 6 :G T0547 8 :IW 1rg8A 8 :YK Number of specific fragments extracted= 4 number of extra gaps= 3 total=53852 1qg3A expands to /projects/compbio/data/pdb/1qg3.pdb.gz 1qg3A:# 1qg3A.1.4 read from T0547.t04.many.frag # adding 1qg3A to template set # found chain 1qg3A in template set Warning: unaligning (T0547)D3 (1qg3A)N1132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G5 (1qg3A)N1134 because E (beta_S) conformation "forbidden" or filtered. T0547 1 :MM 1qg3A 1130 :PQ T0547 4 :Y 1qg3A 1133 :P T0547 6 :IDIW 1qg3A 1135 :AKAA Number of specific fragments extracted= 3 number of extra gaps= 2 total=53855 # 2biwA.1.132 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2biwA)T136 Warning: unaligning (T0547)Y4 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2biwA)T136 Warning: unaligning (T0547)D7 (2biwA)T139 because E (beta_S) conformation "forbidden" or filtered. T0547 1 :MM 2biwA 133 :IA T0547 5 :GI 2biwA 137 :NI T0547 8 :IW 2biwA 140 :YW Number of specific fragments extracted= 3 number of extra gaps= 2 total=53858 # 1cjaA.1.57 read from T0547.t04.many.frag # found chain 1cjaA in template set Warning: unaligning (T0547)G5 (1cjaA)D63 because D (zeta) conformation "forbidden" or filtered. T0547 1 :MMDY 1cjaA 59 :NDIG T0547 6 :IDIW 1cjaA 64 :INWK Number of specific fragments extracted= 2 number of extra gaps= 1 total=53860 # 1fy7A.1.24 read from T0547.t04.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)W9 (1fy7A)T190 because Y (epsilon') conformation "forbidden" or filtered. T0547 1 :MMDYGIDI 1fy7A 182 :FSPYPIEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=53861 # 1wv3A.1.38 read from T0547.t04.many.frag # found chain 1wv3A in training set Warning: unaligning (T0547)M1 (1wv3A)G39 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)M2 (1wv3A)E40 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1wv3A)E45 because Y (epsilon') conformation "forbidden" or filtered. T0547 3 :DYGI 1wv3A 41 :VIHL T0547 8 :IW 1wv3A 46 :QN Number of specific fragments extracted= 2 number of extra gaps= 2 total=53863 # 1dqgA.2.34 read from T0547.t04.many.frag # found chain 1dqgA in training set T0547 2 :MDYGIDIWG 1dqgA 35 :ESQKFRWVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53864 # 1wu7A.2.34 read from T0547.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)D7 (1wu7A)R40 because E (beta_S) conformation "forbidden" or filtered. T0547 2 :MDYGI 1wu7A 35 :EAFGF T0547 8 :IWG 1wu7A 41 :RID Number of specific fragments extracted= 2 number of extra gaps= 1 total=53866 # 1zpvA.2.26 read from T0547.t04.many.frag # found chain 1zpvA in template set T0547 2 :MDYGIDIWG 1zpvA 24 :AELGLNIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53867 # 1nepA.2.0 read from T0547.t04.many.frag # found chain 1nepA in training set Warning: unaligning (T0547)M2 because first residue in template chain is (1nepA)E1 Warning: unaligning (T0547)G5 (1nepA)K4 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I6 (1nepA)F5 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1nepA)K6 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1nepA)C8 because G (3-10) conformation "forbidden" or filtered. T0547 3 :DY 1nepA 2 :PV T0547 8 :I 1nepA 7 :D T0547 10 :G 1nepA 9 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=53870 # 1s4cA.2.26 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)I8 (1s4cA)A33 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1s4cA)E35 because P (beta_P) conformation "forbidden" or filtered. T0547 2 :MDYGID 1s4cA 27 :NTLDLN T0547 9 :W 1s4cA 34 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=53872 # 1z90A.2.44 read from T0547.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)D7 (1z90A)Q50 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1z90A)T53 because Y (epsilon') conformation "forbidden" or filtered. T0547 2 :MDYGI 1z90A 45 :EWSKI T0547 8 :IW 1z90A 51 :TP Number of specific fragments extracted= 2 number of extra gaps= 2 total=53874 # 1xdpA.2.297 read from T0547.t04.many.frag # found chain 1xdpA in template set T0547 2 :MDYGIDIWG 1xdpA 299 :DFINFPNVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53875 # 1usyA.2.16 read from T0547.t04.many.frag # found chain 1usyA in template set T0547 2 :MDYGIDIWG 1usyA 17 :TKKGFSPFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=53876 # 1b77A.2.68 read from T0547.t04.many.frag # found chain 1b77A in template set Warning: unaligning (T0547)D7 (1b77A)S74 because Y (epsilon') conformation "forbidden" or filtered. T0547 2 :MDYGI 1b77A 69 :DDAEI T0547 8 :IWG 1b77A 75 :MHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=53878 # 2f86B.2.75 read from T0547.t04.many.frag # found chain 2f86B in template set T0547 2 :MDYGIDIWG 2f86B 415 :LNPNVHIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53879 # 1knmA.2.79 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)G5 (1knmA)K83 because E (beta_S) conformation "forbidden" or filtered. T0547 2 :MDY 1knmA 80 :DNQ T0547 6 :IDIWG 1knmA 84 :WRLNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=53881 # 1u9yA.2.17 read from T0547.t04.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)G10 (1u9yA)R26 because P (beta_P) conformation "forbidden" or filtered. T0547 2 :MDYGIDIW 1u9yA 18 :KLLNTKLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=53882 # 1x9iA.2.11 read from T0547.t04.many.frag # found chain 1x9iA in training set Warning: unaligning (T0547)G5 (1x9iA)I15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I8 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0547 2 :MDY 1x9iA 12 :ENY T0547 6 :ID 1x9iA 16 :LR T0547 9 :WG 1x9iA 19 :VD Number of specific fragments extracted= 3 number of extra gaps= 2 total=53885 # 1knmA.2.39 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)G5 (1knmA)Q43 because P (beta_P) conformation "forbidden" or filtered. T0547 2 :MDY 1knmA 40 :TNQ T0547 6 :IDIWG 1knmA 44 :WAATD Number of specific fragments extracted= 2 number of extra gaps= 1 total=53887 # 1iomA.2.5 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)M2 (1iomA)G6 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1iomA)T13 because Y (epsilon') conformation "forbidden" or filtered. T0547 3 :DYGIDI 1iomA 7 :LEGVLF T0547 10 :G 1iomA 14 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=53889 # 1dqgA.2.76 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)Y4 (1dqgA)Q79 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 T0547 2 :MD 1dqgA 77 :EY T0547 5 :GIDI 1dqgA 80 :KWEC Number of specific fragments extracted= 2 number of extra gaps= 2 total=53891 # 1vd6A.2.31 read from T0547.t04.many.frag # found chain 1vd6A in training set T0547 2 :MDYGIDIWG 1vd6A 32 :LEAGLDGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53892 # 2biwA.2.133 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)M2 (2biwA)A134 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2biwA)T136 Warning: unaligning (T0547)Y4 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2biwA)T136 Warning: unaligning (T0547)D7 (2biwA)T139 because E (beta_S) conformation "forbidden" or filtered. T0547 5 :GI 2biwA 137 :NI T0547 8 :IWG 2biwA 140 :YWG Number of specific fragments extracted= 2 number of extra gaps= 2 total=53894 # 1zz1A.2.88 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G5 (1zz1A)T92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I6 (1zz1A)G93 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1zz1A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 2 :MDY 1zz1A 89 :NLP T0547 8 :IWG 1zz1A 95 :DTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=53896 # 1yq2A.2.278 read from T0547.t04.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)G10 (1yq2A)S286 because Y (epsilon') conformation "forbidden" or filtered. T0547 2 :MDYGIDIW 1yq2A 278 :ALENVEPW Number of specific fragments extracted= 1 number of extra gaps= 1 total=53897 # 1w0nA.2.15 read from T0547.t04.many.frag # found chain 1w0nA in training set Warning: unaligning (T0547)W9 (1w0nA)G23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1w0nA)G24 because S (epsilon) conformation "forbidden" or filtered. T0547 2 :MDYGIDI 1w0nA 16 :EAENMKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=53898 # 2bduA.2.8 read from T0547.t04.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)G5 (2bduA)M12 because G (3-10) conformation "forbidden" or filtered. T0547 2 :MDY 2bduA 9 :HLK T0547 6 :IDIWG 2bduA 13 :MPEFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=53900 1pp7U expands to /projects/compbio/data/pdb/1pp7.pdb.gz 1pp7U:# 1pp7U.2.52 read from T0547.t04.many.frag # adding 1pp7U to template set # found chain 1pp7U in template set Warning: unaligning (T0547)D7 (1pp7U)S58 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1pp7U)S61 because Y (epsilon') conformation "forbidden" or filtered. T0547 2 :MDYGI 1pp7U 53 :EEIGL T0547 8 :IW 1pp7U 59 :WI Number of specific fragments extracted= 2 number of extra gaps= 2 total=53902 # 2b8eA.2.66 read from T0547.t04.many.frag # found chain 2b8eA in template set Warning: unaligning (T0547)D7 (2b8eA)E478 because P (beta_P) conformation "forbidden" or filtered. T0547 2 :MDYGI 2b8eA 473 :LEHGI T0547 8 :IWG 2b8eA 479 :LGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=53904 # 2atzA.2.4 read from T0547.t04.many.frag # found chain 2atzA in template set Warning: unaligning (T0547)D3 (2atzA)L6 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G5 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2atzA)I9 Warning: unaligning (T0547)I6 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2atzA)I9 Warning: unaligning (T0547)D7 (2atzA)K10 because L (left) conformation "forbidden" or filtered. T0547 2 :M 2atzA 5 :E T0547 4 :Y 2atzA 7 :K T0547 8 :IWG 2atzA 11 :IDT Number of specific fragments extracted= 3 number of extra gaps= 2 total=53907 # 1jniA.2.66 read from T0547.t04.many.frag # found chain 1jniA in training set Warning: unaligning (T0547)D7 (1jniA)T73 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1jniA)S76 because P (beta_P) conformation "forbidden" or filtered. T0547 2 :MDYGI 1jniA 68 :RLSGA T0547 8 :IW 1jniA 74 :RI Number of specific fragments extracted= 2 number of extra gaps= 2 total=53909 # 1wv3A.2.39 read from T0547.t04.many.frag # found chain 1wv3A in training set Warning: unaligning (T0547)M2 (1wv3A)E40 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G5 (1wv3A)H43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1wv3A)E45 because Y (epsilon') conformation "forbidden" or filtered. T0547 3 :DY 1wv3A 41 :VI T0547 6 :I 1wv3A 44 :L T0547 8 :IWG 1wv3A 46 :QNN Number of specific fragments extracted= 3 number of extra gaps= 3 total=53912 # 1fy7A.2.25 read from T0547.t04.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)G5 (1fy7A)P186 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1fy7A)T190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1fy7A)D191 because G (3-10) conformation "forbidden" or filtered. T0547 2 :MDY 1fy7A 183 :SPY T0547 6 :IDI 1fy7A 187 :IEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=53914 # 1gu7A.2.86 read from T0547.t04.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)G10 (1gu7A)E117 because E (beta_S) conformation "forbidden" or filtered. T0547 2 :MDYGIDIW 1gu7A 109 :VGSNVSSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=53915 # 1qmgA.2.14 read from T0547.t04.many.frag # found chain 1qmgA in training set T0547 2 :MDYGIDIWG 1qmgA 86 :FDFDSSVFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53916 # 1dqgA.3.35 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G5 (1dqgA)K38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1dqgA)S43 because Y (epsilon') conformation "forbidden" or filtered. T0547 3 :DY 1dqgA 36 :SQ T0547 6 :IDIW 1dqgA 39 :FRWV T0547 11 :N 1dqgA 44 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=53919 # 1s4cA.3.27 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)G5 (1s4cA)D30 because N (gamma') conformation "forbidden" or filtered. T0547 3 :DY 1s4cA 28 :TL T0547 6 :IDIWGN 1s4cA 31 :LNALEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=53921 # 1wu7A.3.35 read from T0547.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)N11 (1wu7A)F44 because Y (epsilon') conformation "forbidden" or filtered. T0547 3 :DYGIDIWG 1wu7A 36 :AFGFRRID Number of specific fragments extracted= 1 number of extra gaps= 1 total=53922 # 1nepA.3.1 read from T0547.t04.many.frag # found chain 1nepA in training set T0547 3 :DYGIDIWGN 1nepA 2 :PVKFKDCGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=53923 # 1zpvA.3.27 read from T0547.t04.many.frag # found chain 1zpvA in template set Warning: unaligning (T0547)N11 (1zpvA)I33 because E (beta_S) conformation "forbidden" or filtered. T0547 3 :DYGIDIWG 1zpvA 25 :ELGLNIDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=53924 # 1b77A.3.69 read from T0547.t04.many.frag # found chain 1b77A in template set Warning: unaligning (T0547)G5 (1b77A)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1b77A)S74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1b77A)D78 because G (3-10) conformation "forbidden" or filtered. T0547 3 :DY 1b77A 70 :DA T0547 6 :I 1b77A 73 :I T0547 8 :IWG 1b77A 75 :MHT Number of specific fragments extracted= 3 number of extra gaps= 3 total=53927 # 1xdpA.3.298 read from T0547.t04.many.frag # found chain 1xdpA in template set Warning: unaligning (T0547)G5 (1xdpA)N302 because G (3-10) conformation "forbidden" or filtered. T0547 3 :DY 1xdpA 300 :FI T0547 6 :IDIWGN 1xdpA 303 :FPNVGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=53929 # 1x9iA.3.12 read from T0547.t04.many.frag # found chain 1x9iA in training set Warning: unaligning (T0547)G5 (1x9iA)I15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I8 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0547 3 :DY 1x9iA 13 :NY T0547 6 :ID 1x9iA 16 :LR T0547 9 :WGN 1x9iA 19 :VDF Number of specific fragments extracted= 3 number of extra gaps= 2 total=53932 # 1iomA.3.6 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)D3 (1iomA)L7 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1iomA)L11 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I8 (1iomA)F12 because G (3-10) conformation "forbidden" or filtered. T0547 4 :YGI 1iomA 8 :EGV T0547 9 :WGN 1iomA 13 :TES Number of specific fragments extracted= 2 number of extra gaps= 2 total=53934 # 1z90A.3.45 read from T0547.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)D7 (1z90A)Q50 because E (beta_S) conformation "forbidden" or filtered. T0547 3 :DYGI 1z90A 46 :WSKI T0547 8 :IWGN 1z90A 51 :TPTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=53936 # 1qmgA.3.15 read from T0547.t04.many.frag # found chain 1qmgA in training set T0547 3 :DYGIDIWGN 1qmgA 87 :DFDSSVFKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=53937 # 1usyA.3.17 read from T0547.t04.many.frag # found chain 1usyA in template set T0547 3 :DYGIDIWGN 1usyA 18 :KKGFSPFFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=53938 # 2biwA.3.134 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2biwA)T136 Warning: unaligning (T0547)Y4 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2biwA)T136 T0547 5 :GIDIWGN 2biwA 137 :NITYWGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=53939 # 1knmA.3.40 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)G5 (1knmA)Q43 because P (beta_P) conformation "forbidden" or filtered. T0547 3 :DY 1knmA 41 :NQ T0547 6 :IDIWGN 1knmA 44 :WAATDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=53941 # 2f86B.3.76 read from T0547.t04.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)D3 (2f86B)N416 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (2f86B)G423 because S (epsilon) conformation "forbidden" or filtered. T0547 4 :YGIDIW 2f86B 417 :PNVHII T0547 11 :N 2f86B 424 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=53943 # 1knmA.3.80 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)G5 (1knmA)K83 because E (beta_S) conformation "forbidden" or filtered. T0547 3 :DY 1knmA 81 :NQ T0547 6 :IDIWGN 1knmA 84 :WRLNSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=53945 # 1u9yA.3.18 read from T0547.t04.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)W9 (1u9yA)T25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1u9yA)R26 because P (beta_P) conformation "forbidden" or filtered. T0547 3 :DYGIDI 1u9yA 19 :LLNTKL T0547 11 :N 1u9yA 27 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=53947 # 1dqgA.3.77 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 T0547 3 :DYGIDI 1dqgA 78 :YQKWEC T0547 11 :N 1dqgA 86 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=53949 # 1gu7A.3.87 read from T0547.t04.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)G5 (1gu7A)N112 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1gu7A)E117 because E (beta_S) conformation "forbidden" or filtered. T0547 3 :DY 1gu7A 110 :GS T0547 6 :IDIW 1gu7A 113 :VSSL T0547 11 :N 1gu7A 118 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=53952 # 1zz1A.3.89 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)N11 (1zz1A)D98 because G (3-10) conformation "forbidden" or filtered. T0547 3 :DYGIDIWG 1zz1A 90 :LPTGGDTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=53953 # 1pp7U.3.53 read from T0547.t04.many.frag # found chain 1pp7U in template set T0547 3 :DYGIDIWGN 1pp7U 54 :EIGLSWISD Number of specific fragments extracted= 1 number of extra gaps= 0 total=53954 # 1jniA.3.67 read from T0547.t04.many.frag # found chain 1jniA in training set Warning: unaligning (T0547)G10 (1jniA)S76 because P (beta_P) conformation "forbidden" or filtered. T0547 3 :DYGIDIW 1jniA 69 :LSGATRI T0547 11 :N 1jniA 77 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=53956 # 1yq2A.3.279 read from T0547.t04.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)D7 (1yq2A)E283 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1yq2A)S286 because Y (epsilon') conformation "forbidden" or filtered. T0547 3 :DYGI 1yq2A 279 :LENV T0547 8 :IW 1yq2A 284 :PW T0547 11 :N 1yq2A 287 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=53959 # 1wv3A.3.40 read from T0547.t04.many.frag # found chain 1wv3A in training set Warning: unaligning (T0547)D3 (1wv3A)V41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G5 (1wv3A)H43 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :Y 1wv3A 42 :I T0547 6 :IDIWGN 1wv3A 44 :LEQNNQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=53961 # 1fy7A.3.26 read from T0547.t04.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)G10 (1fy7A)D191 because G (3-10) conformation "forbidden" or filtered. T0547 3 :DYGIDIW 1fy7A 184 :PYPIELT T0547 11 :N 1fy7A 192 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=53963 # 1uc2A.3.1 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)D3 because first residue in template chain is (1uc2A)V2 Warning: unaligning (T0547)G10 (1uc2A)D9 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGIDIW 1uc2A 3 :VPLKRI T0547 11 :N 1uc2A 10 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=53965 # 1g6gA.3.49 read from T0547.t04.many.frag # found chain 1g6gA in training set Warning: unaligning (T0547)Y4 (1g6gA)G79 because S (epsilon) conformation "forbidden" or filtered. T0547 3 :D 1g6gA 78 :L T0547 5 :GIDIWGN 1g6gA 80 :NISRLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=53967 # 1vd6A.3.32 read from T0547.t04.many.frag # found chain 1vd6A in training set T0547 3 :DYGIDIWGN 1vd6A 33 :EAGLDGVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=53968 # 1szwA.3.119 read from T0547.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)G5 (1szwA)D100 because N (gamma') conformation "forbidden" or filtered. T0547 3 :DY 1szwA 98 :MP T0547 6 :IDIWGN 1szwA 101 :LSAFQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=53970 # 2bduA.3.9 read from T0547.t04.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)G5 (2bduA)M12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (2bduA)F16 because G (3-10) conformation "forbidden" or filtered. T0547 3 :DY 2bduA 10 :LK T0547 6 :IDI 2bduA 13 :MPE T0547 10 :GN 2bduA 17 :QK Number of specific fragments extracted= 3 number of extra gaps= 2 total=53973 # 1dqgA.4.36 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)D7 (1dqgA)R40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1dqgA)S43 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGI 1dqgA 37 :QKF T0547 8 :IW 1dqgA 41 :WV T0547 11 :NE 1dqgA 44 :DS Number of specific fragments extracted= 3 number of extra gaps= 2 total=53976 # 1s4cA.4.28 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)G5 (1s4cA)D30 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1s4cA)E35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1s4cA)G37 because S (epsilon) conformation "forbidden" or filtered. T0547 4 :Y 1s4cA 29 :L T0547 6 :IDIW 1s4cA 31 :LNAL T0547 11 :N 1s4cA 36 :N Number of specific fragments extracted= 3 number of extra gaps= 3 total=53979 # 1nepA.4.2 read from T0547.t04.many.frag # found chain 1nepA in training set Warning: unaligning (T0547)I6 (1nepA)F5 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1nepA)K6 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1nepA)C8 because G (3-10) conformation "forbidden" or filtered. T0547 4 :YG 1nepA 3 :VK T0547 8 :I 1nepA 7 :D T0547 10 :GNE 1nepA 9 :GSW Number of specific fragments extracted= 3 number of extra gaps= 2 total=53982 # 1wu7A.4.36 read from T0547.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)Y4 (1wu7A)F37 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1wu7A)D43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1wu7A)F44 because Y (epsilon') conformation "forbidden" or filtered. T0547 5 :GIDIW 1wu7A 38 :GFRRI T0547 12 :E 1wu7A 45 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=53984 # 1b77A.4.70 read from T0547.t04.many.frag # found chain 1b77A in template set T0547 4 :YGIDIWGNE 1b77A 71 :AEISMHTDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=53985 # 2cyjA.4.0 read from T0547.t04.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)Y4 because first residue in template chain is (2cyjA)M1 Warning: unaligning (T0547)E12 (2cyjA)G9 because T (delta_L) conformation "forbidden" or filtered. T0547 5 :GIDIWGN 2cyjA 2 :KIEEVRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=53986 # 2biwA.4.135 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)Y4 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2biwA)T136 Warning: unaligning (T0547)G5 (2biwA)N137 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (2biwA)T139 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (2biwA)D143 because L (left) conformation "forbidden" or filtered. T0547 6 :I 2biwA 138 :I T0547 8 :IWG 2biwA 140 :YWG T0547 12 :E 2biwA 144 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=53989 # 1iomA.4.7 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)W9 (1iomA)T13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1iomA)S15 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :YGIDI 1iomA 8 :EGVLF T0547 10 :G 1iomA 14 :E T0547 12 :E 1iomA 16 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=53992 # 1qmgA.4.16 read from T0547.t04.many.frag # found chain 1qmgA in training set T0547 4 :YGIDIWGNE 1qmgA 88 :FDSSVFKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=53993 # 1wv3A.4.41 read from T0547.t04.many.frag # found chain 1wv3A in training set Warning: unaligning (T0547)D7 (1wv3A)E45 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGI 1wv3A 42 :IHL T0547 8 :IWGNE 1wv3A 46 :QNNQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=53995 # 1zpvA.4.28 read from T0547.t04.many.frag # found chain 1zpvA in template set Warning: unaligning (T0547)D7 (1zpvA)N29 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YGI 1zpvA 26 :LGL T0547 8 :IWGNE 1zpvA 30 :IDDIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=53997 # 1knmA.4.81 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)G5 (1knmA)K83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1knmA)G90 because T (delta_L) conformation "forbidden" or filtered. T0547 4 :Y 1knmA 82 :Q T0547 6 :IDIWGN 1knmA 84 :WRLNSD Number of specific fragments extracted= 2 number of extra gaps= 2 total=53999 # 1knmA.4.41 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)G5 (1knmA)Q43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1knmA)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 4 :Y 1knmA 42 :Q T0547 6 :IDIWGN 1knmA 44 :WAATDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=54001 # 1xdpA.4.299 read from T0547.t04.many.frag # found chain 1xdpA in template set T0547 4 :YGIDIWGNE 1xdpA 301 :INFPNVGKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=54002 # 1dqgA.4.78 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G5 (1dqgA)K80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 T0547 4 :Y 1dqgA 79 :Q T0547 6 :IDI 1dqgA 81 :WEC T0547 11 :NE 1dqgA 86 :DT Number of specific fragments extracted= 3 number of extra gaps= 2 total=54005 # 1x9iA.4.13 read from T0547.t04.many.frag # found chain 1x9iA in training set Warning: unaligning (T0547)Y4 (1x9iA)Y14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1x9iA)F21 because E (beta_S) conformation "forbidden" or filtered. T0547 5 :GIDIWG 1x9iA 15 :ILRRVD T0547 12 :E 1x9iA 22 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=54007 # 1gu7A.4.88 read from T0547.t04.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)G5 (1gu7A)N112 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1gu7A)G119 because T (delta_L) conformation "forbidden" or filtered. T0547 4 :Y 1gu7A 111 :S T0547 6 :IDIWGN 1gu7A 113 :VSSLEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=54009 # 1z90A.4.46 read from T0547.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)D7 (1z90A)Q50 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :YGI 1z90A 47 :SKI T0547 8 :IWGNE 1z90A 51 :TPTDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=54011 # 1zz1A.4.90 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G5 (1zz1A)T92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I6 (1zz1A)G93 because S (epsilon) conformation "forbidden" or filtered. T0547 4 :Y 1zz1A 91 :P T0547 7 :DIWGNE 1zz1A 94 :GDTGDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=54013 # 2f86B.4.77 read from T0547.t04.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)G10 (2f86B)G423 because S (epsilon) conformation "forbidden" or filtered. T0547 4 :YGIDIW 2f86B 417 :PNVHII T0547 11 :NE 2f86B 424 :ED Number of specific fragments extracted= 2 number of extra gaps= 1 total=54015 # 1u9yA.4.19 read from T0547.t04.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)G10 (1u9yA)R26 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YGIDIW 1u9yA 20 :LNTKLT T0547 11 :NE 1u9yA 27 :VE Number of specific fragments extracted= 2 number of extra gaps= 1 total=54017 # 1fy7A.4.27 read from T0547.t04.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)G5 (1fy7A)P186 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1fy7A)T190 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :Y 1fy7A 185 :Y T0547 6 :IDI 1fy7A 187 :IEL T0547 10 :GNE 1fy7A 191 :DED Number of specific fragments extracted= 3 number of extra gaps= 2 total=54020 # 1szwA.4.120 read from T0547.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)I8 (1szwA)A103 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1szwA)E107 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YGID 1szwA 99 :PDLS T0547 9 :WGN 1szwA 104 :FQL Number of specific fragments extracted= 2 number of extra gaps= 2 total=54022 # 1usyA.4.18 read from T0547.t04.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)D7 (1usyA)S22 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YGI 1usyA 19 :KGF T0547 8 :IWGNE 1usyA 23 :PFFVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=54024 2bsfA expands to /projects/compbio/data/pdb/2bsf.pdb.gz 2bsfA:# 2bsfA.4.152 read from T0547.t04.many.frag # adding 2bsfA to template set # found chain 2bsfA in template set Warning: unaligning (T0547)G5 (2bsfA)T304 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :Y 2bsfA 303 :I T0547 6 :IDIWGNE 2bsfA 305 :FPTGGDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=54026 # 1yq2A.4.280 read from T0547.t04.many.frag # found chain 1yq2A in template set T0547 4 :YGIDIWGNE 1yq2A 280 :ENVEPWSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=54027 # 1o7dE.4.18 read from T0547.t04.many.frag # found chain 1o7dE in template set Warning: unaligning (T0547)G5 (1o7dE)T904 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1o7dE)A906 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :Y 1o7dE 903 :L T0547 6 :I 1o7dE 905 :L T0547 8 :IWGNE 1o7dE 907 :RWGPE Number of specific fragments extracted= 3 number of extra gaps= 2 total=54030 # 1uc2A.4.2 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)G5 (1uc2A)P4 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1uc2A)D9 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :Y 1uc2A 3 :V T0547 6 :IDIW 1uc2A 5 :LKRI T0547 11 :NE 1uc2A 10 :KI Number of specific fragments extracted= 3 number of extra gaps= 2 total=54033 # 1g6gA.4.50 read from T0547.t04.many.frag # found chain 1g6gA in training set Warning: unaligning (T0547)Y4 (1g6gA)G79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G5 (1g6gA)N80 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1g6gA)S85 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDIW 1g6gA 81 :ISRL T0547 11 :NE 1g6gA 86 :NK Number of specific fragments extracted= 2 number of extra gaps= 2 total=54035 # 1pp7U.4.54 read from T0547.t04.many.frag # found chain 1pp7U in template set Warning: unaligning (T0547)D7 (1pp7U)S58 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :YGI 1pp7U 55 :IGL T0547 8 :IWGNE 1pp7U 59 :WISDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=54037 # 1dqgA.5.37 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G5 (1dqgA)K38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1dqgA)S43 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIW 1dqgA 39 :FRWV T0547 11 :NEN 1dqgA 44 :DSQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=54039 # 1s4cA.5.29 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)G5 (1s4cA)D30 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1s4cA)G37 because S (epsilon) conformation "forbidden" or filtered. T0547 6 :IDIWGN 1s4cA 31 :LNALEN T0547 13 :N 1s4cA 38 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=54041 # 1b77A.5.71 read from T0547.t04.many.frag # found chain 1b77A in template set Warning: unaligning (T0547)G5 (1b77A)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1b77A)N80 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDIWGNE 1b77A 73 :ISMHTDG Number of specific fragments extracted= 1 number of extra gaps= 2 total=54042 # 2cyjA.5.1 read from T0547.t04.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)N13 (2cyjA)L10 because E (beta_S) conformation "forbidden" or filtered. T0547 5 :GIDIWGNE 2cyjA 2 :KIEEVRFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=54043 # 1wv3A.5.42 read from T0547.t04.many.frag # found chain 1wv3A in training set Warning: unaligning (T0547)E12 (1wv3A)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 5 :GIDIWGN 1wv3A 43 :HLEQNNQ T0547 13 :N 1wv3A 51 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=54045 # 1iomA.5.8 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)W9 (1iomA)T13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1iomA)E14 because E (beta_S) conformation "forbidden" or filtered. T0547 5 :GIDI 1iomA 9 :GVLF T0547 11 :NEN 1iomA 15 :SRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=54047 # 2biwA.5.136 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)G5 (2biwA)N137 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIWGNEN 2biwA 138 :ITYWGDRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=54048 # 1nepA.5.3 read from T0547.t04.many.frag # found chain 1nepA in training set Warning: unaligning (T0547)I6 (1nepA)F5 because Y (epsilon') conformation "forbidden" or filtered. T0547 5 :G 1nepA 4 :K T0547 7 :DIWGNEN 1nepA 6 :KDCGSWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54050 # 1knmA.5.82 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)E12 (1knmA)G90 because T (delta_L) conformation "forbidden" or filtered. T0547 5 :GIDIWGN 1knmA 83 :KWRLNSD T0547 13 :N 1knmA 91 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=54052 # 1dqgA.5.79 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)D7 (1dqgA)E82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 Warning: unaligning (T0547)E12 (1dqgA)T87 because T (delta_L) conformation "forbidden" or filtered. T0547 5 :GI 1dqgA 80 :KW T0547 8 :I 1dqgA 83 :C T0547 11 :N 1dqgA 86 :D T0547 13 :N 1dqgA 88 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=54056 # 1qmgA.5.17 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)G5 (1qmgA)D89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1qmgA)F93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1qmgA)K94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1qmgA)K95 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDI 1qmgA 90 :SSV T0547 12 :EN 1qmgA 96 :EK Number of specific fragments extracted= 2 number of extra gaps= 2 total=54058 # 1wu7A.5.37 read from T0547.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)D7 (1wu7A)R40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1wu7A)F44 because Y (epsilon') conformation "forbidden" or filtered. T0547 5 :GI 1wu7A 38 :GF T0547 8 :IWG 1wu7A 41 :RID T0547 12 :EN 1wu7A 45 :PS Number of specific fragments extracted= 3 number of extra gaps= 2 total=54061 # 1knmA.5.42 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)G5 (1knmA)Q43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1knmA)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 6 :IDIWGN 1knmA 44 :WAATDA T0547 13 :N 1knmA 51 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=54063 # 2bsfA.5.153 read from T0547.t04.many.frag # found chain 2bsfA in template set T0547 5 :GIDIWGNEN 2bsfA 304 :TFPTGGDGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=54064 # 1zz1A.5.91 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)I6 (1zz1A)G93 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1zz1A)G99 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1zz1A)I100 because G (3-10) conformation "forbidden" or filtered. T0547 5 :G 1zz1A 92 :T T0547 7 :DIWGN 1zz1A 94 :GDTGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=54066 # 1fy7A.5.28 read from T0547.t04.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)G5 (1fy7A)P186 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1fy7A)T190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1fy7A)D191 because G (3-10) conformation "forbidden" or filtered. T0547 6 :IDI 1fy7A 187 :IEL T0547 11 :NEN 1fy7A 192 :EDF Number of specific fragments extracted= 2 number of extra gaps= 2 total=54068 # 1xdpA.5.300 read from T0547.t04.many.frag # found chain 1xdpA in template set Warning: unaligning (T0547)G5 (1xdpA)N302 because G (3-10) conformation "forbidden" or filtered. T0547 6 :IDIWGNEN 1xdpA 303 :FPNVGKAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=54069 # 1gu7A.5.89 read from T0547.t04.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)G5 (1gu7A)N112 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1gu7A)E117 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1gu7A)G119 because T (delta_L) conformation "forbidden" or filtered. T0547 6 :IDIW 1gu7A 113 :VSSL T0547 11 :N 1gu7A 118 :A T0547 13 :N 1gu7A 120 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=54072 # 2f86B.5.78 read from T0547.t04.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)G5 (2f86B)N418 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (2f86B)G423 because S (epsilon) conformation "forbidden" or filtered. T0547 6 :IDIW 2f86B 419 :VHII T0547 11 :NEN 2f86B 424 :EDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=54074 # 1z90A.5.47 read from T0547.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)D7 (1z90A)Q50 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1z90A)T53 because Y (epsilon') conformation "forbidden" or filtered. T0547 5 :GI 1z90A 48 :KI T0547 8 :IW 1z90A 51 :TP T0547 11 :NEN 1z90A 54 :DEI Number of specific fragments extracted= 3 number of extra gaps= 2 total=54077 # 1no7A.5.104 read from T0547.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)G5 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1no7A)V556 Warning: unaligning (T0547)I6 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1no7A)V556 Warning: unaligning (T0547)G10 (1no7A)G560 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1no7A)G561 because S (epsilon) conformation "forbidden" or filtered. T0547 7 :DIW 1no7A 557 :ELP T0547 12 :EN 1no7A 562 :DV Number of specific fragments extracted= 2 number of extra gaps= 2 total=54079 # 1u9yA.5.20 read from T0547.t04.many.frag # found chain 1u9yA in template set T0547 5 :GIDIWGNEN 1u9yA 21 :NTKLTRVEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=54080 # 1zpvA.5.29 read from T0547.t04.many.frag # found chain 1zpvA in template set Warning: unaligning (T0547)G10 (1zpvA)D32 because Y (epsilon') conformation "forbidden" or filtered. T0547 5 :GIDIW 1zpvA 27 :GLNID T0547 11 :NEN 1zpvA 33 :ISQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=54082 # 1szwA.5.121 read from T0547.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)G5 (1szwA)D100 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1szwA)F104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1szwA)G108 because T (delta_L) conformation "forbidden" or filtered. T0547 6 :IDI 1szwA 101 :LSA T0547 10 :GNE 1szwA 105 :QLE Number of specific fragments extracted= 2 number of extra gaps= 3 total=54084 # 1x9iA.5.14 read from T0547.t04.many.frag # found chain 1x9iA in training set Warning: unaligning (T0547)G10 (1x9iA)D20 because E (beta_S) conformation "forbidden" or filtered. T0547 5 :GIDIW 1x9iA 15 :ILRRV T0547 11 :NEN 1x9iA 21 :FPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=54086 # 1o7dE.5.19 read from T0547.t04.many.frag # found chain 1o7dE in template set Warning: unaligning (T0547)G5 (1o7dE)T904 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1o7dE)A906 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1o7dE)G909 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :I 1o7dE 905 :L T0547 8 :IW 1o7dE 907 :RW T0547 11 :NEN 1o7dE 910 :PET Number of specific fragments extracted= 3 number of extra gaps= 3 total=54089 # 2bduA.5.11 read from T0547.t04.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)G5 (2bduA)M12 because G (3-10) conformation "forbidden" or filtered. T0547 6 :IDIWGNEN 2bduA 13 :MPEFQKSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=54090 # 1v3eA.5.86 read from T0547.t04.many.frag # found chain 1v3eA in template set T0547 5 :GIDIWGNEN 1v3eA 228 :IITVNSDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54091 # 1usyA.5.19 read from T0547.t04.many.frag # found chain 1usyA in template set T0547 5 :GIDIWGNEN 1usyA 20 :GFSPFFVPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=54092 # 1g6gA.5.51 read from T0547.t04.many.frag # found chain 1g6gA in training set Warning: unaligning (T0547)G10 (1g6gA)S85 because P (beta_P) conformation "forbidden" or filtered. T0547 5 :GIDIW 1g6gA 80 :NISRL T0547 11 :NEN 1g6gA 86 :NKH Number of specific fragments extracted= 2 number of extra gaps= 1 total=54094 # 1dqgA.6.38 read from T0547.t04.many.frag # found chain 1dqgA in training set T0547 6 :IDIWGNENF 1dqgA 39 :FRWVSDSQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=54095 # 1s4cA.6.30 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)G10 (1s4cA)E35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1s4cA)N36 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDIW 1s4cA 31 :LNAL T0547 12 :ENF 1s4cA 37 :GRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=54097 # 1b77A.6.72 read from T0547.t04.many.frag # found chain 1b77A in template set Warning: unaligning (T0547)W9 (1b77A)H76 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDI 1b77A 73 :ISM T0547 10 :GNENF 1b77A 77 :TDGNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=54099 # 1wv3A.6.43 read from T0547.t04.many.frag # found chain 1wv3A in training set Warning: unaligning (T0547)D7 (1wv3A)E45 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :I 1wv3A 44 :L T0547 8 :IWGNENF 1wv3A 46 :QNNQGTW Number of specific fragments extracted= 2 number of extra gaps= 1 total=54101 # 1iomA.6.9 read from T0547.t04.many.frag # found chain 1iomA in training set T0547 6 :IDIWGNENF 1iomA 10 :VLFTESRMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=54102 # 2biwA.6.137 read from T0547.t04.many.frag # found chain 2biwA in template set T0547 6 :IDIWGNENF 2biwA 138 :ITYWGDRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=54103 # 1dqgA.6.80 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)D7 (1dqgA)E82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 Warning: unaligning (T0547)N11 (1dqgA)D86 because L (left) conformation "forbidden" or filtered. T0547 6 :I 1dqgA 81 :W T0547 8 :I 1dqgA 83 :C T0547 12 :ENF 1dqgA 87 :TLF Number of specific fragments extracted= 3 number of extra gaps= 2 total=54106 # 2bsfA.6.154 read from T0547.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0547)E12 (2bsfA)G311 because S (epsilon) conformation "forbidden" or filtered. T0547 6 :IDIWGN 2bsfA 305 :FPTGGD T0547 13 :NF 2bsfA 312 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=54108 # 2cyjA.6.2 read from T0547.t04.many.frag # found chain 2cyjA in training set T0547 6 :IDIWGNENF 2cyjA 3 :IEEVRFGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54109 # 1knmA.6.83 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)D7 (1knmA)R85 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1knmA)G90 because T (delta_L) conformation "forbidden" or filtered. T0547 6 :I 1knmA 84 :W T0547 8 :IWGN 1knmA 86 :LNSD T0547 13 :NF 1knmA 91 :SV Number of specific fragments extracted= 3 number of extra gaps= 2 total=54112 # 1zz1A.6.92 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)I6 (1zz1A)G93 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1zz1A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1zz1A)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 8 :IWGN 1zz1A 95 :DTGD T0547 13 :NF 1zz1A 100 :IT Number of specific fragments extracted= 2 number of extra gaps= 2 total=54114 # 1qmgA.6.18 read from T0547.t04.many.frag # found chain 1qmgA in training set T0547 6 :IDIWGNENF 1qmgA 90 :SSVFKKEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54115 # 1nepA.6.4 read from T0547.t04.many.frag # found chain 1nepA in training set Warning: unaligning (T0547)D7 (1nepA)K6 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1nepA)C8 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F14 (1nepA)G13 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :I 1nepA 5 :F T0547 8 :I 1nepA 7 :D T0547 10 :GNEN 1nepA 9 :GSWV Number of specific fragments extracted= 3 number of extra gaps= 3 total=54118 # 1knmA.6.43 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)N13 (1knmA)E51 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDIWGNE 1knmA 44 :WAATDAG T0547 14 :F 1knmA 52 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=54120 # 1u3eM.6.5 read from T0547.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)G10 (1u3eM)E10 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1u3eM)G11 because T (delta_L) conformation "forbidden" or filtered. T0547 6 :IDIW 1u3eM 6 :IKGY T0547 12 :ENF 1u3eM 12 :HYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=54122 # 1fy7A.6.29 read from T0547.t04.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)G10 (1fy7A)D191 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1fy7A)E192 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1fy7A)F194 because E (beta_S) conformation "forbidden" or filtered. T0547 6 :IDIW 1fy7A 187 :IELT T0547 12 :E 1fy7A 193 :D T0547 14 :F 1fy7A 195 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=54125 # 1no7A.6.105 read from T0547.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)I6 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1no7A)V556 T0547 7 :DIWGNENF 1no7A 557 :ELPGGDVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=54126 # 2f86B.6.79 read from T0547.t04.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)F14 (2f86B)A427 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIWGNEN 2f86B 419 :VHIIGEDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=54127 # 1xdpA.6.301 read from T0547.t04.many.frag # found chain 1xdpA in template set Warning: unaligning (T0547)N11 (1xdpA)K308 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDIWG 1xdpA 303 :FPNVG T0547 12 :ENF 1xdpA 309 :ANL Number of specific fragments extracted= 2 number of extra gaps= 1 total=54129 # 1gu7A.6.90 read from T0547.t04.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)G10 (1gu7A)E117 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1gu7A)G119 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1gu7A)D120 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDIW 1gu7A 113 :VSSL T0547 11 :N 1gu7A 118 :A T0547 14 :F 1gu7A 121 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=54132 # 1g2bA.6.29 read from T0547.t04.many.frag # found chain 1g2bA in training set Warning: unaligning (T0547)W9 (1g2bA)K18 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1g2bA)S19 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDI 1g2bA 15 :YQE T0547 11 :NENF 1g2bA 20 :PREV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54134 # 1o7dE.6.20 read from T0547.t04.many.frag # found chain 1o7dE in template set Warning: unaligning (T0547)G10 (1o7dE)G909 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIW 1o7dE 905 :LARW T0547 11 :NENF 1o7dE 910 :PETL Number of specific fragments extracted= 2 number of extra gaps= 1 total=54136 # 1v3eA.6.87 read from T0547.t04.many.frag # found chain 1v3eA in template set Warning: unaligning (T0547)E12 (1v3eA)L235 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1v3eA)V236 because E (beta_S) conformation "forbidden" or filtered. T0547 6 :IDIWGN 1v3eA 229 :ITVNSD T0547 14 :F 1v3eA 237 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=54138 # 1u9yA.6.21 read from T0547.t04.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)D7 (1u9yA)K23 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :I 1u9yA 22 :T T0547 8 :IWGNENF 1u9yA 24 :LTRVEYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=54140 # 1z90A.6.48 read from T0547.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)W9 (1z90A)P52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1z90A)T53 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDI 1z90A 49 :IQT T0547 11 :NENF 1z90A 54 :DEIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54142 # 1g6gA.6.52 read from T0547.t04.many.frag # found chain 1g6gA in training set T0547 6 :IDIWGNENF 1g6gA 81 :ISRLSNKHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=54143 # 1nbcA.6.42 read from T0547.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0547)W9 (1nbcA)D46 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1nbcA)Q48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1nbcA)D50 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDI 1nbcA 43 :YTV T0547 10 :G 1nbcA 47 :G T0547 12 :E 1nbcA 49 :K T0547 14 :F 1nbcA 51 :Q Number of specific fragments extracted= 4 number of extra gaps= 3 total=54147 # 2calA.6.110 read from T0547.t04.many.frag # found chain 2calA in training set Warning: unaligning (T0547)D7 (2calA)P1113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (2calA)D1117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2calA)G1118 because T (delta_L) conformation "forbidden" or filtered. T0547 6 :I 2calA 1112 :S T0547 8 :IWG 2calA 1114 :VPK T0547 13 :NF 2calA 1119 :KF Number of specific fragments extracted= 3 number of extra gaps= 2 total=54150 # 2a7mA.6.147 read from T0547.t04.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)D7 (2a7mA)K149 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (2a7mA)G153 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2a7mA)D154 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :I 2a7mA 148 :Y T0547 8 :IWG 2a7mA 150 :IIE T0547 13 :NF 2a7mA 155 :YE Number of specific fragments extracted= 3 number of extra gaps= 2 total=54153 # 2atzA.6.8 read from T0547.t04.many.frag # found chain 2atzA in template set Warning: unaligning (T0547)I6 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2atzA)I9 Warning: unaligning (T0547)D7 (2atzA)K10 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2atzA)Y16 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IWGNE 2atzA 11 :IDTSH T0547 14 :F 2atzA 17 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=54155 # 1dqgA.7.39 read from T0547.t04.many.frag # found chain 1dqgA in training set T0547 7 :DIWGNENFI 1dqgA 40 :RWVSDSQIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=54156 # 1s4cA.7.31 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)W9 (1s4cA)L34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1s4cA)N36 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DI 1s4cA 32 :NA T0547 10 :G 1s4cA 35 :E T0547 12 :ENFI 1s4cA 37 :GRHD Number of specific fragments extracted= 3 number of extra gaps= 2 total=54159 # 1b77A.7.73 read from T0547.t04.many.frag # found chain 1b77A in template set Warning: unaligning (T0547)D7 (1b77A)S74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1b77A)H76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1b77A)N80 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :I 1b77A 75 :M T0547 10 :GNE 1b77A 77 :TDG T0547 14 :FI 1b77A 81 :IK Number of specific fragments extracted= 3 number of extra gaps= 3 total=54162 # 2cyjA.7.3 read from T0547.t04.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)N11 (2cyjA)F8 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DIWG 2cyjA 4 :EEVR T0547 12 :ENFI 2cyjA 9 :GLVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=54164 # 1wv3A.7.44 read from T0547.t04.many.frag # found chain 1wv3A in training set Warning: unaligning (T0547)D7 (1wv3A)E45 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IWGNENFI 1wv3A 46 :QNNQGTWQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=54165 # 2bsfA.7.155 read from T0547.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0547)F14 (2bsfA)A313 because Y (epsilon') conformation "forbidden" or filtered. T0547 7 :DIWGNEN 2bsfA 306 :PTGGDGT T0547 15 :I 2bsfA 314 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=54167 # 1dqgA.7.81 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 Warning: unaligning (T0547)N11 (1dqgA)D86 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1dqgA)T87 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1dqgA)L88 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DI 1dqgA 82 :EC T0547 14 :FI 1dqgA 89 :FG Number of specific fragments extracted= 2 number of extra gaps= 1 total=54169 # 2biwA.7.138 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)N11 (2biwA)D143 because L (left) conformation "forbidden" or filtered. T0547 7 :DIWG 2biwA 139 :TYWG T0547 12 :ENFI 2biwA 144 :RLLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=54171 # 1iomA.7.10 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)G10 (1iomA)E14 because E (beta_S) conformation "forbidden" or filtered. T0547 7 :DIW 1iomA 11 :LFT T0547 11 :NENFI 1iomA 15 :SRMCY Number of specific fragments extracted= 2 number of extra gaps= 1 total=54173 # 1zz1A.7.93 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)D7 (1zz1A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IWGNENFI 1zz1A 95 :DTGDGITM Number of specific fragments extracted= 1 number of extra gaps= 1 total=54174 # 1qmgA.7.19 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)N13 (1qmgA)K97 because E (beta_S) conformation "forbidden" or filtered. T0547 7 :DIWGNE 1qmgA 91 :SVFKKE T0547 14 :FI 1qmgA 98 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=54176 # 1knmA.7.84 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)E12 (1knmA)G90 because T (delta_L) conformation "forbidden" or filtered. T0547 7 :DIWGN 1knmA 85 :RLNSD T0547 13 :NFI 1knmA 91 :SVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54178 # 1u3eM.7.6 read from T0547.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)I8 (1u3eM)G8 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1u3eM)E10 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :D 1u3eM 7 :K T0547 9 :W 1u3eM 9 :Y T0547 11 :NENFI 1u3eM 11 :GHYQV Number of specific fragments extracted= 3 number of extra gaps= 2 total=54181 # 1wjxA.7.89 read from T0547.t04.many.frag # found chain 1wjxA in training set T0547 7 :DIWGNENFI 1wjxA 90 :GKVEQKGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=54182 # 1nepA.7.5 read from T0547.t04.many.frag # found chain 1nepA in training set Warning: unaligning (T0547)D7 (1nepA)K6 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1nepA)S10 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :IWG 1nepA 7 :DCG T0547 12 :ENFI 1nepA 11 :WVGV Number of specific fragments extracted= 2 number of extra gaps= 2 total=54184 # 1gu7A.7.91 read from T0547.t04.many.frag # found chain 1gu7A in training set T0547 7 :DIWGNENFI 1gu7A 114 :SSLEAGDWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54185 # 1fy7A.7.30 read from T0547.t04.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)W9 (1fy7A)T190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1fy7A)D191 because G (3-10) conformation "forbidden" or filtered. T0547 7 :DI 1fy7A 188 :EL T0547 11 :NENFI 1fy7A 192 :EDFIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=54187 # 1knmA.7.44 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)N13 (1knmA)E51 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DIWGNE 1knmA 45 :AATDAG T0547 14 :FI 1knmA 52 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=54189 # 2cs7A.7.17 read from T0547.t04.many.frag # found chain 2cs7A in training set Warning: unaligning (T0547)G10 (2cs7A)T20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (2cs7A)G21 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2cs7A)A23 because Y (epsilon') conformation "forbidden" or filtered. T0547 7 :DIW 2cs7A 17 :IED T0547 12 :E 2cs7A 22 :D T0547 14 :FI 2cs7A 24 :YI Number of specific fragments extracted= 3 number of extra gaps= 2 total=54192 # 1dqaA.7.102 read from T0547.t04.many.frag # found chain 1dqaA in template set Warning: unaligning (T0547)G10 (1dqaA)C527 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1dqaA)N529 because L (left) conformation "forbidden" or filtered. T0547 7 :DIW 1dqaA 524 :GAC T0547 11 :N 1dqaA 528 :E T0547 13 :NFI 1dqaA 530 :VIG Number of specific fragments extracted= 3 number of extra gaps= 2 total=54195 # 1nbcA.7.43 read from T0547.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0547)D7 (1nbcA)T44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1nbcA)D46 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1nbcA)Q48 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :I 1nbcA 45 :V T0547 10 :G 1nbcA 47 :G T0547 12 :ENFI 1nbcA 49 :KDQT Number of specific fragments extracted= 3 number of extra gaps= 3 total=54198 # 1g2bA.7.30 read from T0547.t04.many.frag # found chain 1g2bA in training set T0547 7 :DIWGNENFI 1g2bA 16 :QEKSPREVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=54199 # 1no7A.7.106 read from T0547.t04.many.frag # found chain 1no7A in template set T0547 7 :DIWGNENFI 1no7A 557 :ELPGGDVPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=54200 # 2f86B.7.80 read from T0547.t04.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)G10 (2f86B)G423 because S (epsilon) conformation "forbidden" or filtered. T0547 7 :DIW 2f86B 420 :HII T0547 11 :NENFI 2f86B 424 :EDAAC Number of specific fragments extracted= 2 number of extra gaps= 1 total=54202 # 1dj7B.7.18 read from T0547.t04.many.frag # found chain 1dj7B in template set Warning: unaligning (T0547)I8 (1dj7B)E20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1dj7B)K22 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :D 1dj7B 19 :P T0547 9 :W 1dj7B 21 :H T0547 11 :NENFI 1dj7B 23 :KTAFD Number of specific fragments extracted= 3 number of extra gaps= 2 total=54205 # 1hxn.7.68 read from T0547.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)D7 (1hxn)F284 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IWGNENFI 1hxn 285 :SWEDKLYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=54206 # 1o7dE.7.21 read from T0547.t04.many.frag # found chain 1o7dE in template set T0547 7 :DIWGNENFI 1o7dE 906 :ARWGPETLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=54207 # 1v3eA.7.88 read from T0547.t04.many.frag # found chain 1v3eA in template set Warning: unaligning (T0547)E12 (1v3eA)L235 because L (left) conformation "forbidden" or filtered. T0547 7 :DIWGN 1v3eA 230 :TVNSD T0547 13 :NFI 1v3eA 236 :VPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=54209 # 2calA.7.111 read from T0547.t04.many.frag # found chain 2calA in training set Warning: unaligning (T0547)W9 (2calA)P1115 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DI 2calA 1113 :PV T0547 10 :GNENFI 2calA 1116 :KDGKFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=54211 # 1g6gA.7.53 read from T0547.t04.many.frag # found chain 1g6gA in training set Warning: unaligning (T0547)G10 (1g6gA)S85 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DIW 1g6gA 82 :SRL T0547 11 :NENFI 1g6gA 86 :NKHFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=54213 # 1dqgA.8.40 read from T0547.t04.many.frag # found chain 1dqgA in training set T0547 8 :IWGNENFII 1dqgA 41 :WVSDSQIMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=54214 # 2bsfA.8.156 read from T0547.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0547)W9 (2bsfA)G308 because T (delta_L) conformation "forbidden" or filtered. T0547 8 :I 2bsfA 307 :T T0547 10 :GNENFII 2bsfA 309 :GDGTANI Number of specific fragments extracted= 2 number of extra gaps= 1 total=54216 # 2cyjA.8.4 read from T0547.t04.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)G10 (2cyjA)R7 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IW 2cyjA 5 :EV T0547 11 :NENFII 2cyjA 8 :FGLVKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=54218 # 1dqgA.8.82 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 Warning: unaligning (T0547)I15 (1dqgA)G90 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :I 1dqgA 83 :C T0547 11 :NENF 1dqgA 86 :DTLF T0547 16 :I 1dqgA 91 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=54221 # 1s4cA.8.32 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)G10 (1s4cA)E35 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :IW 1s4cA 33 :AL T0547 11 :NENFII 1s4cA 36 :NGRHDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=54223 # 1b77A.8.74 read from T0547.t04.many.frag # found chain 1b77A in template set T0547 8 :IWGNENFII 1b77A 75 :MHTDGNIKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=54224 # 1qmgA.8.20 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)G10 (1qmgA)K94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1qmgA)E96 because E (beta_S) conformation "forbidden" or filtered. T0547 8 :IW 1qmgA 92 :VF T0547 11 :N 1qmgA 95 :K T0547 13 :NFII 1qmgA 97 :KVTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=54227 # 1wv3A.8.45 read from T0547.t04.many.frag # found chain 1wv3A in training set T0547 8 :IWGNENFII 1wv3A 46 :QNNQGTWQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=54228 # 1iomA.8.11 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)I8 (1iomA)F12 because G (3-10) conformation "forbidden" or filtered. T0547 9 :WGNENFII 1iomA 13 :TESRMCYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=54229 # 1knmA.8.85 read from T0547.t04.many.frag # found chain 1knmA in training set T0547 8 :IWGNENFII 1knmA 86 :LNSDGSVVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=54230 # 1wjxA.8.90 read from T0547.t04.many.frag # found chain 1wjxA in training set T0547 8 :IWGNENFII 1wjxA 91 :KVEQKGLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=54231 # 2biwA.8.139 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)N11 (2biwA)D143 because L (left) conformation "forbidden" or filtered. T0547 8 :IWG 2biwA 140 :YWG T0547 12 :ENFII 2biwA 144 :RLLAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=54233 # 1zz1A.8.94 read from T0547.t04.many.frag # found chain 1zz1A in training set T0547 8 :IWGNENFII 1zz1A 95 :DTGDGITMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=54234 1stmA expands to /projects/compbio/data/pdb/1stm.pdb.gz 1stmA:# 1stmA.8.48 read from T0547.t04.many.frag # adding 1stmA to template set # found chain 1stmA in template set T0547 8 :IWGNENFII 1stmA 49 :GMGDRAFQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54235 # 1dqaA.8.103 read from T0547.t04.many.frag # found chain 1dqaA in template set Warning: unaligning (T0547)G10 (1dqaA)C527 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1dqaA)N529 because L (left) conformation "forbidden" or filtered. T0547 8 :IW 1dqaA 525 :AC T0547 11 :N 1dqaA 528 :E T0547 13 :NFII 1dqaA 530 :VIGY Number of specific fragments extracted= 3 number of extra gaps= 2 total=54238 # 1nbcA.8.44 read from T0547.t04.many.frag # found chain 1nbcA in training set T0547 8 :IWGNENFII 1nbcA 45 :VDGQKDQTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=54239 # 1knmA.8.45 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)E12 (1knmA)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 8 :IWGN 1knmA 46 :ATDA T0547 13 :NFII 1knmA 51 :ELRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54241 # 1u3eM.8.7 read from T0547.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)I8 (1u3eM)G8 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1u3eM)E10 because P (beta_P) conformation "forbidden" or filtered. T0547 9 :W 1u3eM 9 :Y T0547 11 :NENFII 1u3eM 11 :GHYQVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=54243 # 1hxn.8.69 read from T0547.t04.many.frag # found chain 1hxn in training set T0547 8 :IWGNENFII 1hxn 285 :SWEDKLYLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=54244 # 1gu7A.8.92 read from T0547.t04.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)G10 (1gu7A)E117 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1gu7A)G119 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1gu7A)D120 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :IW 1gu7A 115 :SL T0547 11 :N 1gu7A 118 :A T0547 14 :FII 1gu7A 121 :WVI Number of specific fragments extracted= 3 number of extra gaps= 2 total=54247 # 1dj7B.8.19 read from T0547.t04.many.frag # found chain 1dj7B in template set Warning: unaligning (T0547)G10 (1dj7B)K22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1dj7B)K23 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1dj7B)A25 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :IW 1dj7B 20 :EH T0547 12 :E 1dj7B 24 :T T0547 14 :FII 1dj7B 26 :FDL Number of specific fragments extracted= 3 number of extra gaps= 2 total=54250 # 2cs7A.8.18 read from T0547.t04.many.frag # found chain 2cs7A in training set Warning: unaligning (T0547)G10 (2cs7A)T20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (2cs7A)G21 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2cs7A)A23 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IW 2cs7A 18 :ED T0547 12 :E 2cs7A 22 :D T0547 14 :FII 2cs7A 24 :YIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=54253 # 1fy7A.8.31 read from T0547.t04.many.frag # found chain 1fy7A in template set T0547 8 :IWGNENFII 1fy7A 189 :LTDEDFIYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=54254 # 1d0qA.8.43 read from T0547.t04.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)N13 (1d0qA)S49 because G (3-10) conformation "forbidden" or filtered. T0547 8 :IWGNE 1d0qA 44 :GEKTP T0547 14 :FII 1d0qA 50 :FSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54256 # 1jb0D.8.40 read from T0547.t04.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)G10 (1jb0D)T43 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1jb0D)A44 because S (epsilon) conformation "forbidden" or filtered. T0547 8 :IW 1jb0D 41 :MP T0547 12 :ENFII 1jb0D 45 :GAAVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=54258 # 1eexA.8.34 read from T0547.t04.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)I8 (1eexA)N35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1eexA)P37 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1eexA)S40 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :W 1eexA 36 :D T0547 11 :NE 1eexA 38 :KP T0547 14 :FII 1eexA 41 :IKI Number of specific fragments extracted= 3 number of extra gaps= 3 total=54261 # 3seb.8.26 read from T0547.t04.many.frag # found chain 3seb in training set Warning: unaligning (T0547)G10 (3seb)D29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (3seb)N31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (3seb)H32 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IW 3seb 27 :LY T0547 11 :N 3seb 30 :D T0547 14 :FII 3seb 33 :VSA Number of specific fragments extracted= 3 number of extra gaps= 2 total=54264 # 3chbD.8.12 read from T0547.t04.many.frag # found chain 3chbD in training set T0547 8 :IWGNENFII 3chbD 12 :YHNTQIHTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=54265 # 1euwA.8.102 read from T0547.t04.many.frag # found chain 1euwA in training set Warning: unaligning (T0547)N13 (1euwA)S108 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :IWGNE 1euwA 103 :NRGQD T0547 14 :FII 1euwA 109 :FTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=54267 1d5yA expands to /projects/compbio/data/pdb/1d5y.pdb.gz 1d5yA:# 1d5yA.8.122 read from T0547.t04.many.frag # adding 1d5yA to template set # found chain 1d5yA in template set Warning: unaligning (T0547)E12 (1d5yA)K129 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IWGN 1d5yA 125 :MPEH T0547 13 :NFII 1d5yA 130 :FVTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=54269 # 1dqgA.9.41 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)W9 (1dqgA)V42 because G (3-10) conformation "forbidden" or filtered. T0547 10 :GNENFIIK 1dqgA 43 :SDSQIMSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=54270 # 2bsfA.9.157 read from T0547.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0547)W9 (2bsfA)G308 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2bsfA)G311 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2bsfA)R316 because Y (epsilon') conformation "forbidden" or filtered. T0547 10 :GN 2bsfA 309 :GD T0547 13 :NFII 2bsfA 312 :TANI Number of specific fragments extracted= 2 number of extra gaps= 3 total=54272 # 2cyjA.9.5 read from T0547.t04.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)G10 (2cyjA)R7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2cyjA)G9 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2cyjA)D14 because L (left) conformation "forbidden" or filtered. T0547 9 :W 2cyjA 6 :V T0547 11 :N 2cyjA 8 :F T0547 13 :NFII 2cyjA 10 :LVKI Number of specific fragments extracted= 3 number of extra gaps= 3 total=54275 # 1dqgA.9.83 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 Warning: unaligning (T0547)N11 (1dqgA)D86 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1dqgA)T87 because T (delta_L) conformation "forbidden" or filtered. T0547 13 :NFIIK 1dqgA 88 :LFGIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=54276 # 1wjxA.9.91 read from T0547.t04.many.frag # found chain 1wjxA in training set Warning: unaligning (T0547)G10 (1wjxA)E93 because N (gamma') conformation "forbidden" or filtered. T0547 9 :W 1wjxA 92 :V T0547 11 :NENFIIK 1wjxA 94 :QKGLTLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54278 # 1knmA.9.86 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)E12 (1knmA)G90 because T (delta_L) conformation "forbidden" or filtered. T0547 9 :WGN 1knmA 87 :NSD T0547 13 :NFIIK 1knmA 91 :SVVGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54280 # 1qmgA.9.21 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)G10 (1qmgA)K94 because P (beta_P) conformation "forbidden" or filtered. T0547 9 :W 1qmgA 93 :F T0547 11 :NENFIIK 1qmgA 95 :KEKVTLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=54282 # 1stmA.9.49 read from T0547.t04.many.frag # found chain 1stmA in template set T0547 9 :WGNENFIIK 1stmA 50 :MGDRAFQVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54283 # 1hxn.9.70 read from T0547.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)G10 (1hxn)E287 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1hxn)K289 because E (beta_S) conformation "forbidden" or filtered. T0547 9 :W 1hxn 286 :W T0547 11 :N 1hxn 288 :D T0547 13 :NFIIK 1hxn 290 :LYLIQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=54286 # 1b77A.9.75 read from T0547.t04.many.frag # found chain 1b77A in template set Warning: unaligning (T0547)E12 (1b77A)G79 because T (delta_L) conformation "forbidden" or filtered. T0547 9 :WGN 1b77A 76 :HTD T0547 13 :NFIIK 1b77A 80 :NIKIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=54288 # 1wv3A.9.46 read from T0547.t04.many.frag # found chain 1wv3A in training set Warning: unaligning (T0547)N11 (1wv3A)Q49 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1wv3A)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 9 :WG 1wv3A 47 :NN T0547 13 :NFIIK 1wv3A 51 :TWQAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=54290 # 1s4cA.9.33 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1s4cA)D43 T0547 9 :WGNENFII 1s4cA 34 :LENGRHDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=54291 # 1eexA.9.35 read from T0547.t04.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)G10 (1eexA)P37 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1eexA)K38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1eexA)S40 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :W 1eexA 36 :D T0547 12 :E 1eexA 39 :P T0547 14 :FIIK 1eexA 41 :IKIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=54294 # 1d0qA.9.44 read from T0547.t04.many.frag # found chain 1d0qA in training set T0547 9 :WGNENFIIK 1d0qA 45 :EKTPSFSVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=54295 # 1iomA.9.12 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)G10 (1iomA)E14 because E (beta_S) conformation "forbidden" or filtered. T0547 9 :W 1iomA 13 :T T0547 11 :NENFIIK 1iomA 15 :SRMCYID Number of specific fragments extracted= 2 number of extra gaps= 1 total=54297 # 1dj7B.9.20 read from T0547.t04.many.frag # found chain 1dj7B in template set Warning: unaligning (T0547)N11 (1dj7B)K23 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I16 (1dj7B)L28 because G (3-10) conformation "forbidden" or filtered. T0547 9 :WG 1dj7B 21 :HK T0547 12 :ENFI 1dj7B 24 :TAFD T0547 17 :K 1dj7B 29 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=54300 # 1zz1A.9.95 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)E12 (1zz1A)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 9 :WGN 1zz1A 96 :TGD T0547 13 :NFIIK 1zz1A 100 :ITMMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=54302 # 1nbcA.9.45 read from T0547.t04.many.frag # found chain 1nbcA in training set T0547 9 :WGNENFIIK 1nbcA 46 :DGQKDQTFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=54303 # 1euwA.9.103 read from T0547.t04.many.frag # found chain 1euwA in training set T0547 9 :WGNENFIIK 1euwA 104 :RGQDSFTIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=54304 # 1dqaA.9.104 read from T0547.t04.many.frag # found chain 1dqaA in template set Warning: unaligning (T0547)G10 (1dqaA)C527 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1dqaA)N529 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1dqaA)M534 because E (beta_S) conformation "forbidden" or filtered. T0547 9 :W 1dqaA 526 :C T0547 11 :N 1dqaA 528 :E T0547 13 :NFII 1dqaA 530 :VIGY Number of specific fragments extracted= 3 number of extra gaps= 3 total=54307 # 2biwA.9.140 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)N11 (2biwA)D143 because L (left) conformation "forbidden" or filtered. T0547 9 :WG 2biwA 141 :WG T0547 12 :ENFIIK 2biwA 144 :RLLALW Number of specific fragments extracted= 2 number of extra gaps= 1 total=54309 # 1jb0D.9.41 read from T0547.t04.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)E12 (1jb0D)G45 because S (epsilon) conformation "forbidden" or filtered. T0547 9 :WGN 1jb0D 42 :PTA T0547 13 :NFIIK 1jb0D 46 :AAVMR Number of specific fragments extracted= 2 number of extra gaps= 1 total=54311 # 1onwA.9.22 read from T0547.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)G10 (1onwA)G24 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1onwA)I25 because P (beta_P) conformation "forbidden" or filtered. T0547 9 :W 1onwA 23 :R T0547 12 :ENFIIK 1onwA 26 :CDVLVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=54313 # 1knmA.9.46 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)K17 (1knmA)Y55 because L (left) conformation "forbidden" or filtered. T0547 9 :WGNENFII 1knmA 47 :TDAGELRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=54314 # 2cs7A.9.19 read from T0547.t04.many.frag # found chain 2cs7A in training set Warning: unaligning (T0547)G10 (2cs7A)T20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (2cs7A)G21 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2cs7A)A23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2cs7A)P27 because P (beta_P) conformation "forbidden" or filtered. T0547 9 :W 2cs7A 19 :D T0547 12 :E 2cs7A 22 :D T0547 14 :FII 2cs7A 24 :YIV Number of specific fragments extracted= 3 number of extra gaps= 3 total=54317 # 1gu7A.9.93 read from T0547.t04.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)G10 (1gu7A)E117 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1gu7A)G119 because T (delta_L) conformation "forbidden" or filtered. T0547 9 :W 1gu7A 116 :L T0547 11 :N 1gu7A 118 :A T0547 13 :NFIIK 1gu7A 120 :DWVIP Number of specific fragments extracted= 3 number of extra gaps= 2 total=54320 # 1l4dB.9.67 read from T0547.t04.many.frag # found chain 1l4dB in template set Warning: unaligning (T0547)N13 (1l4dB)Y97 because P (beta_P) conformation "forbidden" or filtered. T0547 9 :WGNE 1l4dB 93 :SNDD T0547 14 :FIIK 1l4dB 98 :FEVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=54322 # 1dabA.9.507 read from T0547.t04.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)E12 (1dabA)G511 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1dabA)K512 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1dabA)G516 because S (epsilon) conformation "forbidden" or filtered. T0547 9 :WGN 1dabA 508 :NKD T0547 14 :FII 1dabA 513 :VDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=54324 # 1fy7A.9.32 read from T0547.t04.many.frag # found chain 1fy7A in template set T0547 9 :WGNENFIIK 1fy7A 190 :TDEDFIYID Number of specific fragments extracted= 1 number of extra gaps= 0 total=54325 # 1ifrA.9.25 read from T0547.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0547)W9 (1ifrA)K457 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1ifrA)S458 because P (beta_P) conformation "forbidden" or filtered. T0547 11 :NENFIIK 1ifrA 459 :NEDQSMG Number of specific fragments extracted= 1 number of extra gaps= 1 total=54326 # 1dqgA.10.42 read from T0547.t04.many.frag # found chain 1dqgA in training set T0547 10 :GNENFIIKN 1dqgA 43 :SDSQIMSVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=54327 # 2bsfA.10.158 read from T0547.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0547)K17 (2bsfA)R316 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (2bsfA)S317 because L (left) conformation "forbidden" or filtered. T0547 10 :GNENFII 2bsfA 309 :GDGTANI Number of specific fragments extracted= 1 number of extra gaps= 1 total=54328 # 1dqgA.10.84 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 Warning: unaligning (T0547)N11 (1dqgA)D86 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1dqgA)T87 because T (delta_L) conformation "forbidden" or filtered. T0547 13 :NFIIKN 1dqgA 88 :LFGIKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=54329 # 1eexA.10.36 read from T0547.t04.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)E12 (1eexA)P39 because P (beta_P) conformation "forbidden" or filtered. T0547 10 :GN 1eexA 37 :PK T0547 13 :NFIIKN 1eexA 40 :SIKIVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=54331 # 1stmA.10.50 read from T0547.t04.many.frag # found chain 1stmA in template set T0547 10 :GNENFIIKN 1stmA 51 :GDRAFQVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=54332 # 1wjxA.10.92 read from T0547.t04.many.frag # found chain 1wjxA in training set Warning: unaligning (T0547)N11 (1wjxA)Q94 because E (beta_S) conformation "forbidden" or filtered. T0547 10 :G 1wjxA 93 :E T0547 12 :ENFIIKN 1wjxA 95 :KGLTLVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=54334 # 1qmgA.10.22 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)K17 (1qmgA)S101 because L (left) conformation "forbidden" or filtered. T0547 10 :GNENFII 1qmgA 94 :KKEKVTL T0547 18 :N 1qmgA 102 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=54336 # 2cyjA.10.6 read from T0547.t04.many.frag # found chain 2cyjA in training set T0547 10 :GNENFIIKN 2cyjA 7 :RFGLVKIDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=54337 # 1knmA.10.87 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)E12 (1knmA)G90 because T (delta_L) conformation "forbidden" or filtered. T0547 10 :GN 1knmA 88 :SD T0547 13 :NFIIKN 1knmA 91 :SVVGVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=54339 # 1hxn.10.71 read from T0547.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)G10 (1hxn)E287 because S (epsilon) conformation "forbidden" or filtered. T0547 11 :NENFIIKN 1hxn 288 :DKLYLIQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=54340 # 1iomA.10.13 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)G10 (1iomA)E14 because E (beta_S) conformation "forbidden" or filtered. T0547 11 :NENFIIKN 1iomA 15 :SRMCYIDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=54341 # 1s4cA.10.34 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)G10 (1s4cA)E35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1s4cA)D43 Warning: unaligning (T0547)N18 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1s4cA)D43 T0547 11 :NENFII 1s4cA 36 :NGRHDI Number of specific fragments extracted= 1 number of extra gaps= 2 total=54342 # 1yzyA.10.115 read from T0547.t04.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)N18 (1yzyA)N123 because L (left) conformation "forbidden" or filtered. T0547 10 :GNENFIIK 1yzyA 115 :PVNGRTIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=54343 # 1nbcA.10.46 read from T0547.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0547)N11 (1nbcA)Q48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1nbcA)D50 because P (beta_P) conformation "forbidden" or filtered. T0547 10 :G 1nbcA 47 :G T0547 12 :E 1nbcA 49 :K T0547 14 :FIIKN 1nbcA 51 :QTFWC Number of specific fragments extracted= 3 number of extra gaps= 2 total=54346 # 1wv3A.10.47 read from T0547.t04.many.frag # found chain 1wv3A in training set Warning: unaligning (T0547)E12 (1wv3A)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1wv3A)N55 because L (left) conformation "forbidden" or filtered. T0547 10 :GN 1wv3A 48 :NQ T0547 13 :NFII 1wv3A 51 :TWQA T0547 18 :N 1wv3A 56 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=54349 # 1dqaA.10.105 read from T0547.t04.many.frag # found chain 1dqaA in template set Warning: unaligning (T0547)G10 (1dqaA)C527 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1dqaA)E528 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1dqaA)N529 because L (left) conformation "forbidden" or filtered. T0547 13 :NFIIKN 1dqaA 530 :VIGYMP Number of specific fragments extracted= 1 number of extra gaps= 1 total=54350 # 1dj7B.10.21 read from T0547.t04.many.frag # found chain 1dj7B in template set Warning: unaligning (T0547)N11 (1dj7B)K23 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I16 (1dj7B)L28 because G (3-10) conformation "forbidden" or filtered. T0547 10 :G 1dj7B 22 :K T0547 12 :ENFI 1dj7B 24 :TAFD T0547 17 :KN 1dj7B 29 :QG Number of specific fragments extracted= 3 number of extra gaps= 2 total=54353 # 1b77A.10.76 read from T0547.t04.many.frag # found chain 1b77A in template set Warning: unaligning (T0547)E12 (1b77A)G79 because T (delta_L) conformation "forbidden" or filtered. T0547 10 :GN 1b77A 77 :TD T0547 13 :NFIIKN 1b77A 80 :NIKIAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=54355 # 1onwA.10.23 read from T0547.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)K17 (1onwA)A31 because E (beta_S) conformation "forbidden" or filtered. T0547 10 :GNENFII 1onwA 24 :GICDVLV T0547 18 :N 1onwA 32 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=54357 # 1dabA.10.508 read from T0547.t04.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)G10 (1dabA)K509 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1dabA)D510 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1dabA)G511 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1dabA)K512 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1dabA)G516 because S (epsilon) conformation "forbidden" or filtered. T0547 14 :FII 1dabA 513 :VDI T0547 18 :N 1dabA 517 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=54359 # 1zz1A.10.96 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)N11 (1zz1A)D98 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1zz1A)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 10 :G 1zz1A 97 :G T0547 13 :NFIIKN 1zz1A 100 :ITMMGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=54361 # 1jb0D.10.42 read from T0547.t04.many.frag # found chain 1jb0D in template set T0547 10 :GNENFIIKN 1jb0D 43 :TAGAAVMRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=54362 # 1d0qA.10.45 read from T0547.t04.many.frag # found chain 1d0qA in training set T0547 10 :GNENFIIKN 1d0qA 46 :KTPSFSVSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=54363 # 1euwA.10.104 read from T0547.t04.many.frag # found chain 1euwA in training set Warning: unaligning (T0547)N13 (1euwA)S108 because P (beta_P) conformation "forbidden" or filtered. T0547 10 :GNE 1euwA 105 :GQD T0547 14 :FIIKN 1euwA 109 :FTIQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=54365 # 2f6eA.10.9 read from T0547.t04.many.frag # found chain 2f6eA in template set T0547 10 :GNENFIIKN 2f6eA 11 :GANGYKIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=54366 # 2cs7A.10.20 read from T0547.t04.many.frag # found chain 2cs7A in training set Warning: unaligning (T0547)N13 (2cs7A)A23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2cs7A)P27 because P (beta_P) conformation "forbidden" or filtered. T0547 10 :GNE 2cs7A 20 :TGD T0547 14 :FII 2cs7A 24 :YIV T0547 18 :N 2cs7A 28 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=54369 # 1l4dB.10.68 read from T0547.t04.many.frag # found chain 1l4dB in template set T0547 10 :GNENFIIKN 1l4dB 94 :NDDYFEVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=54370 # 2biwA.10.141 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)N11 (2biwA)D143 because L (left) conformation "forbidden" or filtered. T0547 10 :G 2biwA 142 :G T0547 12 :ENFIIKN 2biwA 144 :RLLALWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=54372 # 1r0mA.10.3 read from T0547.t04.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)E12 because first residue in template chain is (1r0mA)R6 Warning: unaligning (T0547)N13 (1r0mA)M7 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1r0mA)A12 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FIIK 1r0mA 8 :FKIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=54373 # 1ifrA.10.26 read from T0547.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0547)G10 (1ifrA)S458 because P (beta_P) conformation "forbidden" or filtered. T0547 11 :NENFIIKN 1ifrA 459 :NEDQSMGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=54374 # 1dqgA.11.43 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G19 (1dqgA)F52 because G (3-10) conformation "forbidden" or filtered. T0547 11 :NENFIIKN 1dqgA 44 :DSQIMSVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=54375 # 1eexA.11.37 read from T0547.t04.many.frag # found chain 1eexA in training set T0547 11 :NENFIIKNG 1eexA 38 :KPSIKIVNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=54376 # 2bsfA.11.159 read from T0547.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0547)N11 (2bsfA)D310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2bsfA)R316 because Y (epsilon') conformation "forbidden" or filtered. T0547 12 :ENFII 2bsfA 311 :GTANI T0547 18 :NG 2bsfA 317 :SL Number of specific fragments extracted= 2 number of extra gaps= 2 total=54378 # 1stmA.11.51 read from T0547.t04.many.frag # found chain 1stmA in template set Warning: unaligning (T0547)E12 (1stmA)R53 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1stmA)A59 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :N 1stmA 52 :D T0547 13 :NFIIK 1stmA 54 :AFQVV T0547 19 :G 1stmA 60 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=54381 # 1dqgA.11.85 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)N11 (1dqgA)D86 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1dqgA)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 12 :ENFIIK 1dqgA 87 :TLFGIK T0547 19 :G 1dqgA 94 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=54383 # 1wjxA.11.93 read from T0547.t04.many.frag # found chain 1wjxA in training set Warning: unaligning (T0547)N13 (1wjxA)G96 because T (delta_L) conformation "forbidden" or filtered. T0547 11 :NE 1wjxA 94 :QK T0547 14 :FIIKNG 1wjxA 97 :LTLVPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=54385 # 1hxn.11.72 read from T0547.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)N11 (1hxn)D288 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1hxn)D295 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1hxn)T296 because G (3-10) conformation "forbidden" or filtered. T0547 12 :ENFIIK 1hxn 289 :KLYLIQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=54386 # 1b77A.11.77 read from T0547.t04.many.frag # found chain 1b77A in template set T0547 11 :NENFIIKNG 1b77A 78 :DGNIKIADT Number of specific fragments extracted= 1 number of extra gaps= 0 total=54387 # 1qmgA.11.23 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)K17 (1qmgA)S101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1qmgA)H103 because E (beta_S) conformation "forbidden" or filtered. T0547 11 :NENFII 1qmgA 95 :KEKVTL T0547 18 :N 1qmgA 102 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=54389 # 1onwA.11.24 read from T0547.t04.many.frag # found chain 1onwA in training set T0547 11 :NENFIIKNG 1onwA 25 :ICDVLVANG Number of specific fragments extracted= 1 number of extra gaps= 0 total=54390 # 1yzyA.11.116 read from T0547.t04.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)N13 (1yzyA)G118 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1yzyA)N123 because L (left) conformation "forbidden" or filtered. T0547 11 :NE 1yzyA 116 :VN T0547 14 :FIIK 1yzyA 119 :RTIF T0547 19 :G 1yzyA 124 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=54393 # 1nbcA.11.47 read from T0547.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0547)N13 (1nbcA)D50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1nbcA)W54 because E (beta_S) conformation "forbidden" or filtered. T0547 11 :NE 1nbcA 48 :QK T0547 14 :FII 1nbcA 51 :QTF T0547 18 :NG 1nbcA 55 :CD Number of specific fragments extracted= 3 number of extra gaps= 2 total=54396 # 1wv3A.11.48 read from T0547.t04.many.frag # found chain 1wv3A in training set Warning: unaligning (T0547)E12 (1wv3A)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1wv3A)N55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1wv3A)H56 because T (delta_L) conformation "forbidden" or filtered. T0547 11 :N 1wv3A 49 :Q T0547 13 :NFII 1wv3A 51 :TWQA T0547 19 :G 1wv3A 57 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=54399 # 1knmA.11.88 read from T0547.t04.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)E12 (1knmA)G90 because T (delta_L) conformation "forbidden" or filtered. T0547 11 :N 1knmA 89 :D T0547 13 :NFIIKNG 1knmA 91 :SVVGVQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=54401 # 1dqaA.11.106 read from T0547.t04.many.frag # found chain 1dqaA in template set Warning: unaligning (T0547)E12 (1dqaA)N529 because L (left) conformation "forbidden" or filtered. T0547 11 :N 1dqaA 528 :E T0547 13 :NFIIKNG 1dqaA 530 :VIGYMPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=54403 # 1s4cA.11.35 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)E12 (1s4cA)G37 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1s4cA)D43 Warning: unaligning (T0547)N18 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1s4cA)D43 T0547 11 :N 1s4cA 36 :N T0547 13 :NFII 1s4cA 38 :RHDI T0547 19 :G 1s4cA 44 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=54406 # 1d0qA.11.46 read from T0547.t04.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)E12 (1d0qA)P48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1d0qA)S53 because E (beta_S) conformation "forbidden" or filtered. T0547 11 :N 1d0qA 47 :T T0547 13 :NFII 1d0qA 49 :SFSV T0547 18 :NG 1d0qA 54 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=54409 # 2f6eA.11.10 read from T0547.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)N18 (2f6eA)D19 because L (left) conformation "forbidden" or filtered. T0547 11 :NENFIIK 2f6eA 12 :ANGYKII T0547 19 :G 2f6eA 20 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=54411 # 1dabA.11.509 read from T0547.t04.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)N13 (1dabA)K512 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :NE 1dabA 510 :DG T0547 14 :FIIKNG 1dabA 513 :VDIGTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=54413 # 1iomA.11.14 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)N11 (1iomA)S15 because E (beta_S) conformation "forbidden" or filtered. T0547 12 :ENFIIKNG 1iomA 16 :RMCYIDGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=54414 # 2aukA.11.15 read from T0547.t04.many.frag # found chain 2aukA in template set Warning: unaligning (T0547)N11 (2aukA)K16 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2aukA)G17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2aukA)S18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2aukA)S22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (2aukA)V24 because E (beta_S) conformation "forbidden" or filtered. T0547 14 :FII 2aukA 19 :IKL T0547 18 :N 2aukA 23 :N Number of specific fragments extracted= 2 number of extra gaps= 3 total=54416 # 1vcc.11.0 read from T0547.t04.many.frag # found chain 1vcc in training set Warning: unaligning (T0547)N11 because first residue in template chain is (1vcc)M1 Warning: unaligning (T0547)N18 (1vcc)D8 because L (left) conformation "forbidden" or filtered. T0547 12 :ENFIIK 1vcc 2 :RALFYK T0547 19 :G 1vcc 9 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=54418 # 1dj7B.11.22 read from T0547.t04.many.frag # found chain 1dj7B in template set Warning: unaligning (T0547)N11 (1dj7B)K23 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1dj7B)G30 because T (delta_L) conformation "forbidden" or filtered. T0547 12 :ENFIIK 1dj7B 24 :TAFDLQ T0547 19 :G 1dj7B 31 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=54420 # 1jb0D.11.43 read from T0547.t04.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)E12 (1jb0D)G45 because S (epsilon) conformation "forbidden" or filtered. T0547 11 :N 1jb0D 44 :A T0547 13 :NFIIKNG 1jb0D 46 :AAVMREG Number of specific fragments extracted= 2 number of extra gaps= 1 total=54422 1y12A expands to /projects/compbio/data/pdb/1y12.pdb.gz 1y12A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1y12A.11.50 read from T0547.t04.many.frag # adding 1y12A to template set # found chain 1y12A in template set Warning: unaligning (T0547)E12 (1y12A)G49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1y12A)L56 because P (beta_P) conformation "forbidden" or filtered. T0547 11 :N 1y12A 48 :A T0547 13 :NFIIKN 1y12A 50 :KVNVQD Number of specific fragments extracted= 2 number of extra gaps= 2 total=54424 # 2cyjA.11.7 read from T0547.t04.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)N11 (2cyjA)F8 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2cyjA)L10 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2cyjA)D14 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (2cyjA)K16 because E (beta_S) conformation "forbidden" or filtered. T0547 12 :E 2cyjA 9 :G T0547 14 :FII 2cyjA 11 :VKI T0547 18 :N 2cyjA 15 :G Number of specific fragments extracted= 3 number of extra gaps= 4 total=54427 # 1r0mA.11.4 read from T0547.t04.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)E12 because first residue in template chain is (1r0mA)R6 Warning: unaligning (T0547)N18 (1r0mA)A12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1r0mA)A13 because E (beta_S) conformation "forbidden" or filtered. T0547 13 :NFIIK 1r0mA 7 :MFKIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=54428 1ux6A expands to /projects/compbio/data/pdb/1ux6.pdb.gz 1ux6A:# 1ux6A.11.334 read from T0547.t04.many.frag # adding 1ux6A to template set # found chain 1ux6A in template set Warning: unaligning (T0547)N13 (1ux6A)M1139 because L (left) conformation "forbidden" or filtered. T0547 11 :NE 1ux6A 1137 :QE T0547 14 :FIIKNG 1ux6A 1140 :VFFSDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=54430 # 3seb.11.29 read from T0547.t04.many.frag # found chain 3seb in training set Warning: unaligning (T0547)E12 (3seb)N31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (3seb)H32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (3seb)I36 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (3seb)N37 because L (left) conformation "forbidden" or filtered. T0547 11 :N 3seb 30 :D T0547 14 :FII 3seb 33 :VSA T0547 19 :G 3seb 38 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=54433 # 1vp6A.11.52 read from T0547.t04.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)N11 (1vp6A)D270 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1vp6A)R271 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :NFIIKNG 1vp6A 272 :MFFVVEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=54434 # 1dqgA.12.44 read from T0547.t04.many.frag # found chain 1dqgA in training set T0547 12 :ENFIIKNGK 1dqgA 45 :SQIMSVAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=54435 # 1eexA.12.38 read from T0547.t04.many.frag # found chain 1eexA in training set T0547 12 :ENFIIKNGK 1eexA 39 :PSIKIVNGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=54436 # 1stmA.12.52 read from T0547.t04.many.frag # found chain 1stmA in template set Warning: unaligning (T0547)N13 (1stmA)A54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1stmA)A59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1stmA)F60 because E (beta_S) conformation "forbidden" or filtered. T0547 12 :E 1stmA 53 :R T0547 14 :FIIK 1stmA 55 :FQVV T0547 20 :K 1stmA 61 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=54439 # 1onwA.12.25 read from T0547.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)E12 (1onwA)C26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1onwA)A31 because E (beta_S) conformation "forbidden" or filtered. T0547 13 :NFII 1onwA 27 :DVLV T0547 18 :NGK 1onwA 32 :NGK Number of specific fragments extracted= 2 number of extra gaps= 2 total=54441 # 1qmgA.12.24 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)K17 (1qmgA)S101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1qmgA)G102 because T (delta_L) conformation "forbidden" or filtered. T0547 12 :ENFII 1qmgA 96 :EKVTL T0547 19 :GK 1qmgA 103 :HD Number of specific fragments extracted= 2 number of extra gaps= 1 total=54443 # 2bsfA.12.160 read from T0547.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0547)N13 (2bsfA)T312 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2bsfA)R316 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (2bsfA)S317 because L (left) conformation "forbidden" or filtered. T0547 12 :E 2bsfA 311 :G T0547 14 :FII 2bsfA 313 :ANI T0547 19 :GK 2bsfA 318 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=54446 # 1vcc.12.1 read from T0547.t04.many.frag # found chain 1vcc in training set Warning: unaligning (T0547)N13 (1vcc)A3 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1vcc)D8 because L (left) conformation "forbidden" or filtered. T0547 12 :E 1vcc 2 :R T0547 14 :FIIK 1vcc 4 :LFYK T0547 19 :GK 1vcc 9 :GK Number of specific fragments extracted= 3 number of extra gaps= 2 total=54449 # 1yzyA.12.117 read from T0547.t04.many.frag # found chain 1yzyA in template set T0547 12 :ENFIIKNGK 1yzyA 117 :NGRTIFNGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=54450 # 1dqgA.12.86 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)N18 (1dqgA)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 12 :ENFIIK 1dqgA 87 :TLFGIK T0547 19 :GK 1dqgA 94 :TE Number of specific fragments extracted= 2 number of extra gaps= 1 total=54452 # 2f6eA.12.11 read from T0547.t04.many.frag # found chain 2f6eA in template set T0547 12 :ENFIIKNGK 2f6eA 13 :NGYKIIDNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=54453 # 1wjxA.12.94 read from T0547.t04.many.frag # found chain 1wjxA in training set Warning: unaligning (T0547)N13 (1wjxA)G96 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1wjxA)K103 because Y (epsilon') conformation "forbidden" or filtered. T0547 12 :E 1wjxA 95 :K T0547 14 :FIIKNG 1wjxA 97 :LTLVPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=54455 # 1dqaA.12.107 read from T0547.t04.many.frag # found chain 1dqaA in template set Warning: unaligning (T0547)E12 (1dqaA)N529 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1dqaA)M534 because E (beta_S) conformation "forbidden" or filtered. T0547 13 :NFII 1dqaA 530 :VIGY T0547 18 :NGK 1dqaA 535 :PIP Number of specific fragments extracted= 2 number of extra gaps= 2 total=54457 # 1hxn.12.73 read from T0547.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)N18 (1hxn)D295 because S (epsilon) conformation "forbidden" or filtered. T0547 12 :ENFIIK 1hxn 289 :KLYLIQ T0547 19 :GK 1hxn 296 :TK Number of specific fragments extracted= 2 number of extra gaps= 1 total=54459 # 1d0qA.12.47 read from T0547.t04.many.frag # found chain 1d0qA in training set T0547 12 :ENFIIKNGK 1d0qA 48 :PSFSVSPEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=54460 # 1nbcA.12.48 read from T0547.t04.many.frag # found chain 1nbcA in training set T0547 12 :ENFIIKNGK 1nbcA 49 :KDQTFWCDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=54461 # 1dabA.12.510 read from T0547.t04.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)N13 (1dabA)K512 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1dabA)G516 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1dabA)Y518 because E (beta_S) conformation "forbidden" or filtered. T0547 12 :E 1dabA 511 :G T0547 14 :FII 1dabA 513 :VDI T0547 18 :N 1dabA 517 :T T0547 20 :K 1dabA 519 :R Number of specific fragments extracted= 4 number of extra gaps= 3 total=54465 # 1b77A.12.78 read from T0547.t04.many.frag # found chain 1b77A in template set Warning: unaligning (T0547)E12 (1b77A)G79 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1b77A)N80 because P (beta_P) conformation "forbidden" or filtered. T0547 14 :FIIKNGK 1b77A 81 :IKIADTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=54466 # 2aukA.12.16 read from T0547.t04.many.frag # found chain 2aukA in template set Warning: unaligning (T0547)E12 (2aukA)G17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2aukA)S18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (2aukA)N23 because L (left) conformation "forbidden" or filtered. T0547 14 :FIIK 2aukA 19 :IKLS T0547 19 :GK 2aukA 24 :VK Number of specific fragments extracted= 2 number of extra gaps= 2 total=54468 # 1r6jA.12.17 read from T0547.t04.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)N18 (1r6jA)N215 because L (left) conformation "forbidden" or filtered. T0547 12 :ENFIIK 1r6jA 209 :VGFIFK T0547 19 :GK 1r6jA 216 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=54470 # 1tf5A.12.306 read from T0547.t04.many.frag # found chain 1tf5A in template set T0547 12 :ENFIIKNGK 1tf5A 304 :VDYVVEDGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=54471 # 1xk5A.12.33 read from T0547.t04.many.frag # found chain 1xk5A in template set Warning: unaligning (T0547)N18 (1xk5A)R136 because L (left) conformation "forbidden" or filtered. T0547 12 :ENFIIK 1xk5A 130 :ALIVAS T0547 19 :GK 1xk5A 137 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=54473 # 1vp6A.12.53 read from T0547.t04.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)E12 (1vp6A)R271 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :NFIIKNGK 1vp6A 272 :MFFVVEGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=54474 # 1y12A.12.51 read from T0547.t04.many.frag # found chain 1y12A in template set Warning: unaligning (T0547)G19 (1y12A)L56 because P (beta_P) conformation "forbidden" or filtered. T0547 12 :ENFIIKN 1y12A 49 :GKVNVQD T0547 20 :K 1y12A 57 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=54476 # 1wv3A.12.49 read from T0547.t04.many.frag # found chain 1wv3A in training set Warning: unaligning (T0547)E12 (1wv3A)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1wv3A)H56 because T (delta_L) conformation "forbidden" or filtered. T0547 13 :NFIIK 1wv3A 51 :TWQAN T0547 19 :GK 1wv3A 57 :TS Number of specific fragments extracted= 2 number of extra gaps= 2 total=54478 1jk4A expands to /projects/compbio/data/pdb/1jk4.pdb.gz 1jk4A:# 1jk4A.12.18 read from T0547.t04.many.frag # adding 1jk4A to template set # found chain 1jk4A in template set Warning: unaligning (T0547)K20 (1jk4A)G33 because S (epsilon) conformation "forbidden" or filtered. T0547 12 :ENFIIKNG 1jk4A 25 :SICCGDEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=54479 # 2cyjA.12.8 read from T0547.t04.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)E12 (2cyjA)G9 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2cyjA)D14 because L (left) conformation "forbidden" or filtered. T0547 13 :NFII 2cyjA 10 :LVKI T0547 18 :NGK 2cyjA 15 :GKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=54481 # 1jb0D.12.44 read from T0547.t04.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)N13 (1jb0D)A46 because P (beta_P) conformation "forbidden" or filtered. T0547 12 :E 1jb0D 45 :G T0547 14 :FIIKNGK 1jb0D 47 :AVMREGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=54483 # 1oxxK.12.1 read from T0547.t04.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)G19 (1oxxK)V9 because P (beta_P) conformation "forbidden" or filtered. T0547 12 :ENFIIKN 1oxxK 2 :VRIIVKN T0547 20 :K 1oxxK 10 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=54485 # 1knmA.12.89 read from T0547.t04.many.frag # found chain 1knmA in training set T0547 12 :ENFIIKNGK 1knmA 90 :GSVVGVQSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=54486 # 1mj4A.12.20 read from T0547.t04.many.frag # found chain 1mj4A in training set Warning: unaligning (T0547)E12 because of BadResidue code BAD_PEPTIDE at template residue (1mj4A)G21 Warning: unaligning (T0547)G19 (1mj4A)S28 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1mj4A)E29 because P (beta_P) conformation "forbidden" or filtered. T0547 13 :NFIIKN 1mj4A 22 :IWVTLG Number of specific fragments extracted= 1 number of extra gaps= 2 total=54487 # 1eexA.13.39 read from T0547.t04.many.frag # found chain 1eexA in training set T0547 13 :NFIIKNGKV 1eexA 40 :SIKIVNGAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54488 # 1dqgA.13.45 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G19 (1dqgA)F52 because G (3-10) conformation "forbidden" or filtered. T0547 13 :NFIIKN 1dqgA 46 :QIMSVA T0547 20 :KV 1dqgA 53 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=54490 # 1onwA.13.26 read from T0547.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)N18 (1onwA)N32 because L (left) conformation "forbidden" or filtered. T0547 13 :NFIIK 1onwA 27 :DVLVA T0547 19 :GKV 1onwA 33 :GKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=54492 # 1vcc.13.2 read from T0547.t04.many.frag # found chain 1vcc in training set Warning: unaligning (T0547)N18 (1vcc)D8 because L (left) conformation "forbidden" or filtered. T0547 13 :NFIIK 1vcc 3 :ALFYK T0547 19 :GKV 1vcc 9 :GKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=54494 # 1stmA.13.53 read from T0547.t04.many.frag # found chain 1stmA in template set Warning: unaligning (T0547)N18 (1stmA)A59 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :NFIIK 1stmA 54 :AFQVV T0547 19 :GKV 1stmA 60 :FTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=54496 # 2f6eA.13.12 read from T0547.t04.many.frag # found chain 2f6eA in template set T0547 13 :NFIIKNGKV 2f6eA 14 :GYKIIDNKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=54497 # 1yzyA.13.118 read from T0547.t04.many.frag # found chain 1yzyA in template set T0547 13 :NFIIKNGKV 1yzyA 118 :GRTIFNGYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=54498 # 2bsfA.13.161 read from T0547.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0547)K17 (2bsfA)R316 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (2bsfA)L318 because P (beta_P) conformation "forbidden" or filtered. T0547 13 :NFII 2bsfA 312 :TANI T0547 18 :N 2bsfA 317 :S T0547 20 :KV 2bsfA 319 :TV Number of specific fragments extracted= 3 number of extra gaps= 2 total=54501 # 1r6jA.13.18 read from T0547.t04.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)F14 (1r6jA)F211 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I16 (1r6jA)F213 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1r6jA)N215 because L (left) conformation "forbidden" or filtered. T0547 13 :N 1r6jA 210 :G T0547 15 :I 1r6jA 212 :I T0547 17 :K 1r6jA 214 :K T0547 19 :GKV 1r6jA 216 :GKI Number of specific fragments extracted= 4 number of extra gaps= 3 total=54505 # 1nbcA.13.49 read from T0547.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0547)N13 (1nbcA)D50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1nbcA)H57 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FIIKNG 1nbcA 51 :QTFWCD T0547 21 :V 1nbcA 58 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=54507 # 1wjxA.13.95 read from T0547.t04.many.frag # found chain 1wjxA in training set Warning: unaligning (T0547)N13 (1wjxA)G96 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1wjxA)V100 because E (beta_S) conformation "forbidden" or filtered. T0547 14 :FII 1wjxA 97 :LTL T0547 18 :NGKV 1wjxA 101 :PLKI Number of specific fragments extracted= 2 number of extra gaps= 2 total=54509 # 1qmgA.13.25 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)N13 (1qmgA)K97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1qmgA)G102 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1qmgA)H103 because E (beta_S) conformation "forbidden" or filtered. T0547 14 :FIIK 1qmgA 98 :VTLS T0547 20 :KV 1qmgA 104 :DE Number of specific fragments extracted= 2 number of extra gaps= 2 total=54511 # 1tf5A.13.307 read from T0547.t04.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)K17 (1tf5A)E309 because E (beta_S) conformation "forbidden" or filtered. T0547 13 :NFII 1tf5A 305 :DYVV T0547 18 :NGKV 1tf5A 310 :DGQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54513 # 1p1mA.13.19 read from T0547.t04.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)N13 (1p1mA)A20 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FIIKNGKV 1p1mA 21 :VEIENGTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=54514 # 2aukA.13.17 read from T0547.t04.many.frag # found chain 2aukA in template set Warning: unaligning (T0547)N13 (2aukA)S18 because E (beta_S) conformation "forbidden" or filtered. T0547 14 :FIIKNGKV 2aukA 19 :IKLSNVKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=54515 # 1v8qA.13.27 read from T0547.t04.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)K20 (1v8qA)N35 because P (beta_P) conformation "forbidden" or filtered. T0547 13 :NFIIKNG 1v8qA 28 :GQVVRAG T0547 21 :V 1v8qA 36 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=54517 # 1dqaA.13.108 read from T0547.t04.many.frag # found chain 1dqaA in template set Warning: unaligning (T0547)I15 (1dqaA)G532 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :NF 1dqaA 530 :VI T0547 16 :IKNGKV 1dqaA 533 :YMPIPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54519 # 1d0qA.13.48 read from T0547.t04.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)V21 (1d0qA)Q57 because L (left) conformation "forbidden" or filtered. T0547 13 :NFIIKNGK 1d0qA 49 :SFSVSPEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=54520 # 1hxn.13.74 read from T0547.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)N18 (1hxn)D295 because S (epsilon) conformation "forbidden" or filtered. T0547 13 :NFIIK 1hxn 290 :LYLIQ T0547 19 :GKV 1hxn 296 :TKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54522 # 1xk5A.13.34 read from T0547.t04.many.frag # found chain 1xk5A in template set Warning: unaligning (T0547)K20 (1xk5A)S138 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :NFIIKNG 1xk5A 131 :LIVASRG T0547 21 :V 1xk5A 139 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=54524 # 1vp6A.13.54 read from T0547.t04.many.frag # found chain 1vp6A in training set T0547 13 :NFIIKNGKV 1vp6A 272 :MFFVVEGSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54525 # 1dqgA.13.87 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)N18 (1dqgA)G93 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1dqgA)T94 because E (beta_S) conformation "forbidden" or filtered. T0547 13 :NFIIK 1dqgA 88 :LFGIK T0547 20 :KV 1dqgA 95 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=54527 # 1wfxA.13.62 read from T0547.t04.many.frag # found chain 1wfxA in template set Warning: unaligning (T0547)K17 (1wfxA)R67 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :NFII 1wfxA 63 :RYEL T0547 18 :NGKV 1wfxA 68 :NGEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=54529 # 1zy9A.13.135 read from T0547.t04.many.frag # found chain 1zy9A in template set T0547 13 :NFIIKNGKV 1zy9A 124 :FFAVEDGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=54530 # 1y12A.13.52 read from T0547.t04.many.frag # found chain 1y12A in template set T0547 13 :NFIIKNGKV 1y12A 50 :KVNVQDLSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=54531 # 1mj4A.13.21 read from T0547.t04.many.frag # found chain 1mj4A in training set T0547 13 :NFIIKNGKV 1mj4A 22 :IWVTLGSEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54532 # 1oxxK.13.2 read from T0547.t04.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)N18 (1oxxK)N8 because L (left) conformation "forbidden" or filtered. T0547 13 :NFIIK 1oxxK 3 :RIIVK T0547 19 :GKV 1oxxK 9 :VSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=54534 # 1dabA.13.511 read from T0547.t04.many.frag # found chain 1dabA in template set T0547 13 :NFIIKNGKV 1dabA 512 :KVDIGTYRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=54535 # 1vqoZ.13.36 read from T0547.t04.many.frag # found chain 1vqoZ in template set Warning: unaligning (T0547)G19 (1vqoZ)T52 because P (beta_P) conformation "forbidden" or filtered. T0547 13 :NFIIKN 1vqoZ 46 :RVDRQG T0547 20 :KV 1vqoZ 53 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=54537 # 1jk4A.13.19 read from T0547.t04.many.frag # found chain 1jk4A in template set Warning: unaligning (T0547)N18 (1jk4A)E31 because G (3-10) conformation "forbidden" or filtered. T0547 13 :NFIIK 1jk4A 26 :ICCGD T0547 19 :GKV 1jk4A 32 :LGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=54539 # 1eexA.14.40 read from T0547.t04.many.frag # found chain 1eexA in training set T0547 14 :FIIKNGKVC 1eexA 41 :IKIVNGAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=54540 # 1onwA.14.27 read from T0547.t04.many.frag # found chain 1onwA in training set T0547 14 :FIIKNGKVC 1onwA 28 :VLVANGKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=54541 # 1dqgA.14.46 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)K20 (1dqgA)K53 because L (left) conformation "forbidden" or filtered. T0547 14 :FIIKNG 1dqgA 47 :IMSVAF T0547 21 :VC 1dqgA 54 :LC Number of specific fragments extracted= 2 number of extra gaps= 1 total=54543 # 1vcc.14.3 read from T0547.t04.many.frag # found chain 1vcc in training set T0547 14 :FIIKNGKVC 1vcc 4 :LFYKDGKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=54544 # 1nbcA.14.50 read from T0547.t04.many.frag # found chain 1nbcA in training set T0547 14 :FIIKNGKVC 1nbcA 51 :QTFWCDHAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=54545 # 1stmA.14.54 read from T0547.t04.many.frag # found chain 1stmA in template set T0547 14 :FIIKNGKVC 1stmA 55 :FQVVAFTIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=54546 # 1r6jA.14.19 read from T0547.t04.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)N18 (1r6jA)N215 because L (left) conformation "forbidden" or filtered. T0547 14 :FIIK 1r6jA 211 :FIFK T0547 19 :GKVC 1r6jA 216 :GKIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=54548 # 1tf5A.14.308 read from T0547.t04.many.frag # found chain 1tf5A in template set T0547 14 :FIIKNGKVC 1tf5A 306 :YVVEDGQVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54549 # 2f6eA.14.13 read from T0547.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)K17 (2f6eA)I18 because E (beta_S) conformation "forbidden" or filtered. T0547 14 :FII 2f6eA 15 :YKI T0547 18 :NGKVC 2f6eA 19 :DNKNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=54551 # 1xk5A.14.35 read from T0547.t04.many.frag # found chain 1xk5A in template set Warning: unaligning (T0547)N18 (1xk5A)R136 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1xk5A)S138 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FIIK 1xk5A 132 :IVAS T0547 19 :G 1xk5A 137 :G T0547 21 :VC 1xk5A 139 :TS Number of specific fragments extracted= 3 number of extra gaps= 2 total=54554 # 1p1mA.14.20 read from T0547.t04.many.frag # found chain 1p1mA in training set T0547 14 :FIIKNGKVC 1p1mA 21 :VEIENGTIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=54555 # 1b9wA.14.54 read from T0547.t04.many.frag # found chain 1b9wA in training set Warning: unaligning (T0547)K20 (1b9wA)E61 because P (beta_P) conformation "forbidden" or filtered. T0547 14 :FIIKNG 1b9wA 55 :GCAPEA T0547 21 :VC 1b9wA 62 :CK Number of specific fragments extracted= 2 number of extra gaps= 1 total=54557 # 2aukA.14.18 read from T0547.t04.many.frag # found chain 2aukA in template set Warning: unaligning (T0547)G19 (2aukA)V24 because E (beta_S) conformation "forbidden" or filtered. T0547 14 :FIIKN 2aukA 19 :IKLSN T0547 20 :KVC 2aukA 25 :KSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54559 # 1wjxA.14.96 read from T0547.t04.many.frag # found chain 1wjxA in training set T0547 14 :FIIKNGKVC 1wjxA 97 :LTLVPLKIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=54560 # 2fn0A.14.130 read from T0547.t04.many.frag # found chain 2fn0A in template set T0547 14 :FIIKNGKVC 2fn0A 128 :LIFEKGNVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=54561 # 2a8kA.14.65 read from T0547.t04.many.frag # found chain 2a8kA in template set T0547 14 :FIIKNGKVC 2a8kA 66 :VYGSPGKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54562 1vqoE expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoE:# 1vqoE.14.13 read from T0547.t04.many.frag # adding 1vqoE to template set # found chain 1vqoE in template set Warning: unaligning (T0547)G19 (1vqoE)L18 because G (3-10) conformation "forbidden" or filtered. T0547 14 :FIIKN 1vqoE 13 :AEQDH T0547 20 :KVC 1vqoE 19 :DIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=54564 # 1v8qA.14.28 read from T0547.t04.many.frag # found chain 1v8qA in template set T0547 14 :FIIKNGKVC 1v8qA 29 :QVVRAGNIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=54565 # 1vp6A.14.55 read from T0547.t04.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)G19 (1vp6A)G278 because S (epsilon) conformation "forbidden" or filtered. T0547 14 :FIIKN 1vp6A 273 :FFVVE T0547 20 :KVC 1vp6A 279 :SVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=54567 # 1yzyA.14.119 read from T0547.t04.many.frag # found chain 1yzyA in template set T0547 14 :FIIKNGKVC 1yzyA 119 :RTIFNGYLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=54568 # 1wfxA.14.63 read from T0547.t04.many.frag # found chain 1wfxA in template set Warning: unaligning (T0547)K17 (1wfxA)R67 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FII 1wfxA 64 :YEL T0547 18 :NGKVC 1wfxA 68 :NGEIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=54570 # 2bsfA.14.162 read from T0547.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0547)K17 (2bsfA)R316 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FII 2bsfA 313 :ANI T0547 18 :NGKVC 2bsfA 317 :SLTVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=54572 # 1qmgA.14.26 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)K17 (1qmgA)S101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1qmgA)H103 because E (beta_S) conformation "forbidden" or filtered. T0547 14 :FII 1qmgA 98 :VTL T0547 18 :N 1qmgA 102 :G T0547 20 :KVC 1qmgA 104 :DEY Number of specific fragments extracted= 3 number of extra gaps= 2 total=54575 # 1y12A.14.53 read from T0547.t04.many.frag # found chain 1y12A in template set Warning: unaligning (T0547)K20 (1y12A)S57 because E (beta_S) conformation "forbidden" or filtered. T0547 14 :FIIKNG 1y12A 51 :VNVQDL T0547 21 :VC 1y12A 58 :FT Number of specific fragments extracted= 2 number of extra gaps= 1 total=54577 # 1mj4A.14.22 read from T0547.t04.many.frag # found chain 1mj4A in training set Warning: unaligning (T0547)K17 (1mj4A)L26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1mj4A)G27 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1mj4A)S28 because G (3-10) conformation "forbidden" or filtered. T0547 14 :FII 1mj4A 23 :WVT T0547 20 :KVC 1mj4A 29 :EVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=54579 # 1dqaA.14.109 read from T0547.t04.many.frag # found chain 1dqaA in template set Warning: unaligning (T0547)N18 (1dqaA)P535 because P (beta_P) conformation "forbidden" or filtered. T0547 14 :FIIK 1dqaA 531 :IGYM T0547 19 :GKVC 1dqaA 536 :IPVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=54581 1iwmA expands to /projects/compbio/data/pdb/1iwm.pdb.gz 1iwmA:# 1iwmA.14.74 read from T0547.t04.many.frag # adding 1iwmA to template set # found chain 1iwmA in template set Warning: unaligning (T0547)K20 (1iwmA)N81 because E (beta_S) conformation "forbidden" or filtered. T0547 14 :FIIKNG 1iwmA 75 :LNAQPG T0547 21 :VC 1iwmA 82 :VQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=54583 # 1d0qA.14.49 read from T0547.t04.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)V21 (1d0qA)Q57 because L (left) conformation "forbidden" or filtered. T0547 14 :FIIKNGK 1d0qA 50 :FSVSPEK T0547 22 :C 1d0qA 58 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=54585 # 1uz5A.14.119 read from T0547.t04.many.frag # found chain 1uz5A in template set Warning: unaligning (T0547)K20 (1uz5A)E126 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FIIKNG 1uz5A 120 :VERVNG T0547 21 :VC 1uz5A 127 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=54587 # 2bhoA.14.73 read from T0547.t04.many.frag # found chain 2bhoA in template set Warning: unaligning (T0547)K17 (2bhoA)L75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (2bhoA)D76 because L (left) conformation "forbidden" or filtered. T0547 14 :FII 2bhoA 72 :QGR T0547 19 :GKVC 2bhoA 77 :GKPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=54589 # 1eexA.15.41 read from T0547.t04.many.frag # found chain 1eexA in training set T0547 15 :IIKNGKVCI 1eexA 42 :KIVNGAVTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=54590 # 1onwA.15.28 read from T0547.t04.many.frag # found chain 1onwA in training set T0547 15 :IIKNGKVCI 1onwA 29 :LVANGKIIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=54591 # 1dqgA.15.47 read from T0547.t04.many.frag # found chain 1dqgA in training set T0547 15 :IIKNGKVCI 1dqgA 48 :MSVAFKLCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=54592 # 1vcc.15.4 read from T0547.t04.many.frag # found chain 1vcc in training set T0547 15 :IIKNGKVCI 1vcc 5 :FYKDGKLFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=54593 # 2a8kA.15.66 read from T0547.t04.many.frag # found chain 2a8kA in template set T0547 15 :IIKNGKVCI 2a8kA 67 :YGSPGKYVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54594 # 1nbcA.15.51 read from T0547.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0547)K20 (1nbcA)H57 because Y (epsilon') conformation "forbidden" or filtered. T0547 15 :IIKNG 1nbcA 52 :TFWCD T0547 21 :VCI 1nbcA 58 :AAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=54596 # 1tf5A.15.309 read from T0547.t04.many.frag # found chain 1tf5A in template set T0547 15 :IIKNGKVCI 1tf5A 307 :VVEDGQVVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=54597 # 2f6eA.15.14 read from T0547.t04.many.frag # found chain 2f6eA in template set T0547 15 :IIKNGKVCI 2f6eA 16 :KIIDNKNFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=54598 # 1vqoE.15.14 read from T0547.t04.many.frag # found chain 1vqoE in template set T0547 15 :IIKNGKVCI 1vqoE 14 :EQDHLDITV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54599 # 1r6jA.15.20 read from T0547.t04.many.frag # found chain 1r6jA in training set T0547 15 :IIKNGKVCI 1r6jA 212 :IFKNGKITS Number of specific fragments extracted= 1 number of extra gaps= 0 total=54600 # 1xk5A.15.36 read from T0547.t04.many.frag # found chain 1xk5A in template set Warning: unaligning (T0547)K17 (1xk5A)S135 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1xk5A)R136 because L (left) conformation "forbidden" or filtered. T0547 15 :II 1xk5A 133 :VA T0547 19 :GKVCI 1xk5A 137 :GSTSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=54602 # 1b9wA.15.55 read from T0547.t04.many.frag # found chain 1b9wA in training set Warning: unaligning (T0547)G19 (1b9wA)A60 because P (beta_P) conformation "forbidden" or filtered. T0547 15 :IIKN 1b9wA 56 :CAPE T0547 20 :KVCI 1b9wA 61 :ECKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=54604 # 2fn0A.15.131 read from T0547.t04.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)N18 (2fn0A)K132 because L (left) conformation "forbidden" or filtered. T0547 15 :IIK 2fn0A 129 :IFE T0547 19 :GKVCI 2fn0A 133 :GNVTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54606 # 1stmA.15.55 read from T0547.t04.many.frag # found chain 1stmA in template set Warning: unaligning (T0547)N18 (1stmA)A59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1stmA)F60 because E (beta_S) conformation "forbidden" or filtered. T0547 15 :IIK 1stmA 56 :QVV T0547 20 :KVCI 1stmA 61 :TIQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=54608 # 1u0fA.15.44 read from T0547.t04.many.frag # found chain 1u0fA in template set T0547 15 :IIKNGKVCI 1u0fA 44 :NTNHGHILV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54609 # 1wjxA.15.97 read from T0547.t04.many.frag # found chain 1wjxA in training set T0547 15 :IIKNGKVCI 1wjxA 98 :TLVPLKIYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=54610 # 1p1mA.15.21 read from T0547.t04.many.frag # found chain 1p1mA in training set T0547 15 :IIKNGKVCI 1p1mA 22 :EIENGTIKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=54611 # 1v8qA.15.29 read from T0547.t04.many.frag # found chain 1v8qA in template set T0547 15 :IIKNGKVCI 1v8qA 30 :VVRAGNILV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54612 # 2aukA.15.19 read from T0547.t04.many.frag # found chain 2aukA in template set T0547 15 :IIKNGKVCI 2aukA 20 :KLSNVKSVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54613 # 1qwyA.15.27 read from T0547.t04.many.frag # found chain 1qwyA in training set T0547 15 :IIKNGKVCI 1qwyA 53 :IDSNGDYHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=54614 # 1vp6A.15.56 read from T0547.t04.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)K20 (1vp6A)S279 because E (beta_S) conformation "forbidden" or filtered. T0547 15 :IIKNG 1vp6A 274 :FVVEG T0547 21 :VCI 1vp6A 280 :VSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54616 # 1mj4A.15.23 read from T0547.t04.many.frag # found chain 1mj4A in training set Warning: unaligning (T0547)N18 (1mj4A)G27 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1mj4A)S28 because G (3-10) conformation "forbidden" or filtered. T0547 15 :IIK 1mj4A 24 :VTL T0547 20 :KVCI 1mj4A 29 :EVFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=54618 # 1y12A.15.54 read from T0547.t04.many.frag # found chain 1y12A in template set T0547 15 :IIKNGKVCI 1y12A 52 :NVQDLSFTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=54619 # 1jk4A.15.21 read from T0547.t04.many.frag # found chain 1jk4A in template set T0547 15 :IIKNGKVCI 1jk4A 28 :CGDELGCFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54620 # 1wfxA.15.64 read from T0547.t04.many.frag # found chain 1wfxA in template set Warning: unaligning (T0547)K17 (1wfxA)R67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1wfxA)N68 because L (left) conformation "forbidden" or filtered. T0547 15 :II 1wfxA 65 :EL T0547 19 :GKVCI 1wfxA 69 :GEIRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=54622 # 1ifrA.15.31 read from T0547.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0547)I16 (1ifrA)M464 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1ifrA)Q468 because Y (epsilon') conformation "forbidden" or filtered. T0547 15 :I 1ifrA 463 :S T0547 17 :KNG 1ifrA 465 :GNW T0547 21 :VCI 1ifrA 469 :IKR Number of specific fragments extracted= 3 number of extra gaps= 2 total=54625 # 1xiwB.15.5 read from T0547.t04.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)N18 (1xiwB)E9 because S (epsilon) conformation "forbidden" or filtered. T0547 15 :IIK 1xiwB 6 :EEL T0547 19 :GKVCI 1xiwB 10 :DRVFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54627 # 1iwmA.15.75 read from T0547.t04.many.frag # found chain 1iwmA in template set Warning: unaligning (T0547)K17 (1iwmA)Q78 because E (beta_S) conformation "forbidden" or filtered. T0547 15 :II 1iwmA 76 :NA T0547 18 :NGKVCI 1iwmA 79 :PGNVQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=54629 # 1kg0C.15.23 read from T0547.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)N18 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1kg0C)G113 Warning: unaligning (T0547)G19 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1kg0C)G113 T0547 15 :IIK 1kg0C 109 :FSY T0547 20 :KVCI 1kg0C 114 :CCFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=54631 # 1uz5A.15.120 read from T0547.t04.many.frag # found chain 1uz5A in template set Warning: unaligning (T0547)N18 (1uz5A)N124 because L (left) conformation "forbidden" or filtered. T0547 15 :IIK 1uz5A 121 :ERV T0547 19 :GKVCI 1uz5A 125 :GEILI Number of specific fragments extracted= 2 number of extra gaps= 1 total=54633 # 1dqgA.16.48 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G19 (1dqgA)F52 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)C22 (1dqgA)C55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1dqgA)G57 because Y (epsilon') conformation "forbidden" or filtered. T0547 16 :IKN 1dqgA 49 :SVA T0547 20 :KV 1dqgA 53 :KL T0547 23 :I 1dqgA 56 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=54636 # 2a8kA.16.67 read from T0547.t04.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)K17 (2a8kA)S69 because E (beta_S) conformation "forbidden" or filtered. T0547 16 :I 2a8kA 68 :G T0547 18 :NGKVCIN 2a8kA 70 :PGKYVVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54638 # 1eexA.16.42 read from T0547.t04.many.frag # found chain 1eexA in training set T0547 16 :IKNGKVCIN 1eexA 43 :IVNGAVTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=54639 # 1onwA.16.29 read from T0547.t04.many.frag # found chain 1onwA in training set T0547 16 :IKNGKVCIN 1onwA 30 :VANGKIIAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54640 # 1vqoE.16.15 read from T0547.t04.many.frag # found chain 1vqoE in template set Warning: unaligning (T0547)K17 (1vqoE)D16 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1vqoE)L18 because G (3-10) conformation "forbidden" or filtered. T0547 16 :I 1vqoE 15 :Q T0547 18 :N 1vqoE 17 :H T0547 20 :KVCIN 1vqoE 19 :DITVE Number of specific fragments extracted= 3 number of extra gaps= 2 total=54643 # 2f6eA.16.15 read from T0547.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)N18 (2f6eA)D19 because L (left) conformation "forbidden" or filtered. T0547 16 :IK 2f6eA 17 :II T0547 19 :GKVCIN 2f6eA 20 :NKNFYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=54645 # 1qwyA.16.28 read from T0547.t04.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)K20 (1qwyA)D58 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1qwyA)T62 because E (beta_S) conformation "forbidden" or filtered. T0547 16 :IKNG 1qwyA 54 :DSNG T0547 21 :VCI 1qwyA 59 :YHH Number of specific fragments extracted= 2 number of extra gaps= 2 total=54647 # 1vcc.16.5 read from T0547.t04.many.frag # found chain 1vcc in training set Warning: unaligning (T0547)N18 (1vcc)D8 because L (left) conformation "forbidden" or filtered. T0547 16 :IK 1vcc 6 :YK T0547 19 :GKVCIN 1vcc 9 :GKLFTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=54649 # 1nbcA.16.52 read from T0547.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0547)K20 (1nbcA)H57 because Y (epsilon') conformation "forbidden" or filtered. T0547 16 :IKNG 1nbcA 53 :FWCD T0547 21 :VCIN 1nbcA 58 :AAII Number of specific fragments extracted= 2 number of extra gaps= 1 total=54651 # 1v8qA.16.30 read from T0547.t04.many.frag # found chain 1v8qA in template set T0547 16 :IKNGKVCIN 1v8qA 31 :VRAGNILVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=54652 # 1tf5A.16.310 read from T0547.t04.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)N18 (1tf5A)D310 because L (left) conformation "forbidden" or filtered. T0547 16 :IK 1tf5A 308 :VE T0547 19 :GKVCIN 1tf5A 311 :GQVVIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54654 # 1xiwB.16.6 read from T0547.t04.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)K20 (1xiwB)R11 because E (beta_S) conformation "forbidden" or filtered. T0547 16 :IKNG 1xiwB 7 :ELED T0547 21 :VCIN 1xiwB 12 :VFVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=54656 # 1u0fA.16.45 read from T0547.t04.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)G19 (1u0fA)G48 because S (epsilon) conformation "forbidden" or filtered. T0547 16 :IKN 1u0fA 45 :TNH T0547 20 :KVCIN 1u0fA 49 :HILVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=54658 # 1xk5A.16.37 read from T0547.t04.many.frag # found chain 1xk5A in template set Warning: unaligning (T0547)N18 (1xk5A)R136 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1xk5A)S138 because Y (epsilon') conformation "forbidden" or filtered. T0547 16 :IK 1xk5A 134 :AS T0547 19 :G 1xk5A 137 :G T0547 21 :VCIN 1xk5A 139 :TSAY Number of specific fragments extracted= 3 number of extra gaps= 2 total=54661 # 2fn0A.16.132 read from T0547.t04.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)N18 (2fn0A)K132 because L (left) conformation "forbidden" or filtered. T0547 16 :IK 2fn0A 130 :FE T0547 19 :GKVCIN 2fn0A 133 :GNVTVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=54663 # 1kg0C.16.24 read from T0547.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)N18 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1kg0C)G113 Warning: unaligning (T0547)G19 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1kg0C)G113 Warning: unaligning (T0547)N24 (1kg0C)F118 because P (beta_P) conformation "forbidden" or filtered. T0547 16 :IK 1kg0C 110 :SY T0547 20 :KVCI 1kg0C 114 :CCFY Number of specific fragments extracted= 2 number of extra gaps= 2 total=54665 # 1mj4A.16.24 read from T0547.t04.many.frag # found chain 1mj4A in training set Warning: unaligning (T0547)N18 (1mj4A)G27 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1mj4A)S28 because G (3-10) conformation "forbidden" or filtered. T0547 16 :IK 1mj4A 25 :TL T0547 20 :KVCIN 1mj4A 29 :EVFDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54667 # 2aukA.16.20 read from T0547.t04.many.frag # found chain 2aukA in template set Warning: unaligning (T0547)N18 (2aukA)N23 because L (left) conformation "forbidden" or filtered. T0547 16 :IK 2aukA 21 :LS T0547 19 :GKVCIN 2aukA 24 :VKSVVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=54669 # 1wjxA.16.98 read from T0547.t04.many.frag # found chain 1wjxA in training set T0547 16 :IKNGKVCIN 1wjxA 99 :LVPLKIYFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=54670 # 1b9wA.16.56 read from T0547.t04.many.frag # found chain 1b9wA in training set Warning: unaligning (T0547)G19 (1b9wA)A60 because P (beta_P) conformation "forbidden" or filtered. T0547 16 :IKN 1b9wA 57 :APE T0547 20 :KVCIN 1b9wA 61 :ECKMN Number of specific fragments extracted= 2 number of extra gaps= 1 total=54672 # 1r6jA.16.21 read from T0547.t04.many.frag # found chain 1r6jA in training set T0547 16 :IKNGKVCIN 1r6jA 213 :FKNGKITSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=54673 # 1jk4A.16.22 read from T0547.t04.many.frag # found chain 1jk4A in template set Warning: unaligning (T0547)K20 (1jk4A)G33 because S (epsilon) conformation "forbidden" or filtered. T0547 16 :IKNG 1jk4A 29 :GDEL T0547 21 :VCIN 1jk4A 34 :CFVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=54675 # 1u9yA.16.31 read from T0547.t04.many.frag # found chain 1u9yA in template set T0547 16 :IKNGKVCIN 1u9yA 32 :FPDNEIYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=54676 # 1p1mA.16.22 read from T0547.t04.many.frag # found chain 1p1mA in training set T0547 16 :IKNGKVCIN 1p1mA 23 :IENGTIKRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54677 # 1iwmA.16.76 read from T0547.t04.many.frag # found chain 1iwmA in template set Warning: unaligning (T0547)N18 (1iwmA)P79 because P (beta_P) conformation "forbidden" or filtered. T0547 16 :IK 1iwmA 77 :AQ T0547 19 :GKVCIN 1iwmA 80 :GNVQLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54679 # 1ouoA.16.127 read from T0547.t04.many.frag # found chain 1ouoA in template set Warning: unaligning (T0547)K17 (1ouoA)G147 because S (epsilon) conformation "forbidden" or filtered. T0547 16 :I 1ouoA 146 :Y T0547 18 :NGKVCIN 1ouoA 148 :RCEMQVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=54681 # 1vp6A.16.57 read from T0547.t04.many.frag # found chain 1vp6A in training set T0547 16 :IKNGKVCIN 1vp6A 275 :VVEGSVSVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=54682 # 1q9jA.16.59 read from T0547.t04.many.frag # found chain 1q9jA in template set T0547 16 :IKNGKVCIN 1q9jA 60 :SSDGGWNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54683 # 1o4yA.16.193 read from T0547.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0547)K17 (1o4yA)D211 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1o4yA)F213 because G (3-10) conformation "forbidden" or filtered. T0547 16 :I 1o4yA 210 :K T0547 18 :N 1o4yA 212 :P T0547 20 :KVCIN 1o4yA 214 :TLEYY Number of specific fragments extracted= 3 number of extra gaps= 2 total=54686 # 1ifrA.16.32 read from T0547.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0547)N18 (1ifrA)N466 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1ifrA)W467 because P (beta_P) conformation "forbidden" or filtered. T0547 16 :IK 1ifrA 464 :MG T0547 20 :KVCIN 1ifrA 468 :QIKRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=54688 # 2a8kA.17.68 read from T0547.t04.many.frag # found chain 2a8kA in template set T0547 17 :KNGKVCINY 2a8kA 69 :SPGKYVVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=54689 # 1dqgA.17.49 read from T0547.t04.many.frag # found chain 1dqgA in training set T0547 17 :KNGKVCINY 1dqgA 50 :VAFKLCLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=54690 # 1eexA.17.43 read from T0547.t04.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)N18 (1eexA)N45 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y25 (1eexA)D52 because L (left) conformation "forbidden" or filtered. T0547 17 :K 1eexA 44 :V T0547 19 :GKVCIN 1eexA 46 :GAVTEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=54692 # 1v8qA.17.31 read from T0547.t04.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)K20 (1v8qA)N35 because P (beta_P) conformation "forbidden" or filtered. T0547 17 :KNG 1v8qA 32 :RAG T0547 21 :VCINY 1v8qA 36 :ILVRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=54694 # 1qwyA.17.29 read from T0547.t04.many.frag # found chain 1qwyA in training set T0547 17 :KNGKVCINY 1qwyA 55 :SNGDYHHTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=54695 # 1onwA.17.30 read from T0547.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)C22 (1onwA)I36 because G (3-10) conformation "forbidden" or filtered. T0547 17 :KNGKV 1onwA 31 :ANGKI T0547 23 :INY 1onwA 37 :AVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=54697 # 1vqoE.17.16 read from T0547.t04.many.frag # found chain 1vqoE in template set Warning: unaligning (T0547)G19 (1vqoE)L18 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1vqoE)D19 because P (beta_P) conformation "forbidden" or filtered. T0547 17 :KN 1vqoE 16 :DH T0547 21 :VCINY 1vqoE 20 :ITVEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=54699 # 1nbcA.17.53 read from T0547.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0547)K20 (1nbcA)H57 because Y (epsilon') conformation "forbidden" or filtered. T0547 17 :KNG 1nbcA 54 :WCD T0547 21 :VCINY 1nbcA 58 :AAIIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=54701 # 2f6eA.17.16 read from T0547.t04.many.frag # found chain 2f6eA in template set T0547 17 :KNGKVCINY 2f6eA 18 :IDNKNFYFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=54702 # 1xiwB.17.7 read from T0547.t04.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)N18 (1xiwB)E9 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1xiwB)D10 because G (3-10) conformation "forbidden" or filtered. T0547 17 :K 1xiwB 8 :L T0547 20 :KVCINY 1xiwB 11 :RVFVNC Number of specific fragments extracted= 2 number of extra gaps= 1 total=54704 # 1u0fA.17.46 read from T0547.t04.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)K17 (1u0fA)N46 because T (delta_L) conformation "forbidden" or filtered. T0547 18 :NGKVCINY 1u0fA 47 :HGHILVDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=54705 # 1xk5A.17.38 read from T0547.t04.many.frag # found chain 1xk5A in template set Warning: unaligning (T0547)K20 (1xk5A)S138 because Y (epsilon') conformation "forbidden" or filtered. T0547 17 :KNG 1xk5A 135 :SRG T0547 21 :VCINY 1xk5A 139 :TSAYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=54707 # 1kg0C.17.25 read from T0547.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)N18 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1kg0C)G113 Warning: unaligning (T0547)G19 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1kg0C)G113 T0547 17 :K 1kg0C 111 :Y T0547 20 :KVCINY 1kg0C 114 :CCFYFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=54709 # 1o4yA.17.194 read from T0547.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0547)K17 (1o4yA)D211 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1o4yA)F213 because G (3-10) conformation "forbidden" or filtered. T0547 18 :N 1o4yA 212 :P T0547 20 :KVCINY 1o4yA 214 :TLEYYI Number of specific fragments extracted= 2 number of extra gaps= 2 total=54711 # 1mj4A.17.25 read from T0547.t04.many.frag # found chain 1mj4A in training set Warning: unaligning (T0547)K17 (1mj4A)L26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1mj4A)G27 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1mj4A)S28 because G (3-10) conformation "forbidden" or filtered. T0547 20 :KVCINY 1mj4A 29 :EVFDVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=54712 # 1wjxA.17.99 read from T0547.t04.many.frag # found chain 1wjxA in training set Warning: unaligning (T0547)K20 (1wjxA)K103 because Y (epsilon') conformation "forbidden" or filtered. T0547 17 :KNG 1wjxA 100 :VPL T0547 21 :VCINY 1wjxA 104 :IYFNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=54714 # 1ouoA.17.128 read from T0547.t04.many.frag # found chain 1ouoA in template set T0547 17 :KNGKVCINY 1ouoA 147 :GRCEMQVNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=54715 # 1r6jA.17.22 read from T0547.t04.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)I23 (1r6jA)S220 because Y (epsilon') conformation "forbidden" or filtered. T0547 17 :KNGKVC 1r6jA 214 :KNGKIT T0547 24 :NY 1r6jA 221 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54717 # 2aukA.17.21 read from T0547.t04.many.frag # found chain 2aukA in template set Warning: unaligning (T0547)G19 (2aukA)V24 because E (beta_S) conformation "forbidden" or filtered. T0547 17 :KN 2aukA 22 :SN T0547 20 :KVCINY 2aukA 25 :KSVVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=54719 # 1tf5A.17.311 read from T0547.t04.many.frag # found chain 1tf5A in template set T0547 17 :KNGKVCINY 1tf5A 309 :EDGQVVIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=54720 # 2fn0A.17.133 read from T0547.t04.many.frag # found chain 2fn0A in template set T0547 17 :KNGKVCINY 2fn0A 131 :EKGNVTVYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=54721 # 1b9wA.17.57 read from T0547.t04.many.frag # found chain 1b9wA in training set Warning: unaligning (T0547)G19 (1b9wA)A60 because P (beta_P) conformation "forbidden" or filtered. T0547 17 :KN 1b9wA 58 :PE T0547 20 :KVCINY 1b9wA 61 :ECKMND Number of specific fragments extracted= 2 number of extra gaps= 1 total=54723 1dgwY expands to /projects/compbio/data/pdb/1dgw.pdb.gz 1dgwY:# 1dgwY.17.10 read from T0547.t04.many.frag # adding 1dgwY to template set # found chain 1dgwY in template set T0547 17 :KNGKVCINY 1dgwY 341 :SEGDIIVIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=54724 # 1gmuA.17.50 read from T0547.t04.many.frag # found chain 1gmuA in training set T0547 17 :KNGKVCINY 1gmuA 51 :RGGDVLSNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=54725 # 1vcc.17.6 read from T0547.t04.many.frag # found chain 1vcc in training set Warning: unaligning (T0547)N18 (1vcc)D8 because L (left) conformation "forbidden" or filtered. T0547 17 :K 1vcc 7 :K T0547 19 :GKVCINY 1vcc 9 :GKLFTDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=54727 # 1vp6A.17.58 read from T0547.t04.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)G19 (1vp6A)G278 because S (epsilon) conformation "forbidden" or filtered. T0547 17 :KN 1vp6A 276 :VE T0547 20 :KVCINY 1vp6A 279 :SVSVAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=54729 # 1jiwI.17.63 read from T0547.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)G19 (1jiwI)A66 because G (3-10) conformation "forbidden" or filtered. T0547 17 :KN 1jiwI 64 :TP T0547 20 :KVCINY 1jiwI 67 :GIALLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=54731 # 1iwmA.17.77 read from T0547.t04.many.frag # found chain 1iwmA in template set T0547 17 :KNGKVCINY 1iwmA 78 :QPGNVQLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=54732 # 1p1mA.17.23 read from T0547.t04.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)K17 (1p1mA)E24 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I23 (1p1mA)R30 because Y (epsilon') conformation "forbidden" or filtered. T0547 18 :NGKVC 1p1mA 25 :NGTIK T0547 24 :NY 1p1mA 31 :VL Number of specific fragments extracted= 2 number of extra gaps= 2 total=54734 # 1q9jA.17.60 read from T0547.t04.many.frag # found chain 1q9jA in template set T0547 17 :KNGKVCINY 1q9jA 61 :SDGGWNLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=54735 # 2a8kA.18.69 read from T0547.t04.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)N18 (2a8kA)P70 because P (beta_P) conformation "forbidden" or filtered. T0547 19 :GKVCINYE 2a8kA 71 :GKYVVVND Number of specific fragments extracted= 1 number of extra gaps= 1 total=54736 # 1dqgA.18.50 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G19 (1dqgA)F52 because G (3-10) conformation "forbidden" or filtered. T0547 18 :N 1dqgA 51 :A T0547 20 :KVCINYE 1dqgA 53 :KLCLGVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=54738 # 1xiwB.18.8 read from T0547.t04.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)G19 (1xiwB)D10 because G (3-10) conformation "forbidden" or filtered. T0547 18 :N 1xiwB 9 :E T0547 20 :KVCINYE 1xiwB 11 :RVFVNCN Number of specific fragments extracted= 2 number of extra gaps= 1 total=54740 # 1v8qA.18.32 read from T0547.t04.many.frag # found chain 1v8qA in template set T0547 18 :NGKVCINYE 1v8qA 33 :AGNILVRQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=54741 # 1vqoE.18.17 read from T0547.t04.many.frag # found chain 1vqoE in template set Warning: unaligning (T0547)N18 (1vqoE)H17 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1vqoE)L18 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y25 (1vqoE)G24 because Y (epsilon') conformation "forbidden" or filtered. T0547 20 :KVCIN 1vqoE 19 :DITVE T0547 26 :E 1vqoE 25 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=54743 # 2aukA.18.22 read from T0547.t04.many.frag # found chain 2aukA in template set T0547 18 :NGKVCINYE 2aukA 23 :NVKSVVNSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=54744 # 1ouoA.18.129 read from T0547.t04.many.frag # found chain 1ouoA in template set Warning: unaligning (T0547)G19 (1ouoA)C149 because P (beta_P) conformation "forbidden" or filtered. T0547 18 :N 1ouoA 148 :R T0547 20 :KVCINYE 1ouoA 150 :EMQVNFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=54746 # 2f6eA.18.17 read from T0547.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)E26 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. T0547 18 :NGKVCINY 2f6eA 19 :DNKNFYFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=54747 # 1qwyA.18.30 read from T0547.t04.many.frag # found chain 1qwyA in training set T0547 18 :NGKVCINYE 1qwyA 56 :NGDYHHTPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=54748 # 1o4yA.18.195 read from T0547.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0547)E26 (1o4yA)D220 because L (left) conformation "forbidden" or filtered. T0547 18 :NGKVCINY 1o4yA 212 :PFTLEYYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=54749 # 1xk5A.18.39 read from T0547.t04.many.frag # found chain 1xk5A in template set T0547 18 :NGKVCINYE 1xk5A 136 :RGSTSAYTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=54750 # 1nbcA.18.54 read from T0547.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0547)K20 (1nbcA)H57 because Y (epsilon') conformation "forbidden" or filtered. T0547 18 :NG 1nbcA 55 :CD T0547 21 :VCINYE 1nbcA 58 :AAIIGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=54752 # 1wjxA.18.100 read from T0547.t04.many.frag # found chain 1wjxA in training set Warning: unaligning (T0547)N18 (1wjxA)P101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1wjxA)K103 because Y (epsilon') conformation "forbidden" or filtered. T0547 19 :G 1wjxA 102 :L T0547 21 :VCINYE 1wjxA 104 :IYFNER Number of specific fragments extracted= 2 number of extra gaps= 2 total=54754 # 1onwA.18.31 read from T0547.t04.many.frag # found chain 1onwA in training set T0547 18 :NGKVCINYE 1onwA 32 :NGKIIAVAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=54755 # 1kg0C.18.26 read from T0547.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)N18 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1kg0C)G113 Warning: unaligning (T0547)G19 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1kg0C)G113 T0547 20 :KVCINYE 1kg0C 114 :CCFYFTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=54756 # 1u0fA.18.47 read from T0547.t04.many.frag # found chain 1u0fA in template set T0547 18 :NGKVCINYE 1u0fA 47 :HGHILVDYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=54757 # 1jiwI.18.64 read from T0547.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)G19 (1jiwI)A66 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 18 :N 1jiwI 65 :P T0547 21 :VCINYE 1jiwI 68 :IALLER Number of specific fragments extracted= 2 number of extra gaps= 1 total=54759 # 1r6jA.18.23 read from T0547.t04.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)C22 (1r6jA)T219 because G (3-10) conformation "forbidden" or filtered. T0547 18 :NGKV 1r6jA 215 :NGKI T0547 23 :INYE 1r6jA 220 :SIVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=54761 # 1vp6A.18.59 read from T0547.t04.many.frag # found chain 1vp6A in training set T0547 18 :NGKVCINYE 1vp6A 277 :EGSVSVATP Number of specific fragments extracted= 1 number of extra gaps= 0 total=54762 # 1ifrA.18.34 read from T0547.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0547)G19 (1ifrA)W467 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1ifrA)Q468 because Y (epsilon') conformation "forbidden" or filtered. T0547 18 :N 1ifrA 466 :N T0547 21 :VCINYE 1ifrA 469 :IKRQNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=54764 # 1mj4A.18.26 read from T0547.t04.many.frag # found chain 1mj4A in training set Warning: unaligning (T0547)N18 (1mj4A)G27 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1mj4A)S28 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1mj4A)E29 because P (beta_P) conformation "forbidden" or filtered. T0547 21 :VCINYE 1mj4A 30 :VFDVTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=54765 # 1tf5A.18.312 read from T0547.t04.many.frag # found chain 1tf5A in template set T0547 18 :NGKVCINYE 1tf5A 310 :DGQVVIVDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=54766 # 1b9wA.18.58 read from T0547.t04.many.frag # found chain 1b9wA in training set T0547 18 :NGKVCINYE 1b9wA 59 :EAECKMNDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=54767 # 1eexA.18.44 read from T0547.t04.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)E26 (1eexA)G53 because T (delta_L) conformation "forbidden" or filtered. T0547 18 :NGKVCINY 1eexA 45 :NGAVTELD Number of specific fragments extracted= 1 number of extra gaps= 1 total=54768 # 1vj2A.18.75 read from T0547.t04.many.frag # found chain 1vj2A in training set Warning: unaligning (T0547)N24 (1vj2A)L70 because P (beta_P) conformation "forbidden" or filtered. T0547 18 :NGKVCI 1vj2A 64 :KGKLTV T0547 25 :YE 1vj2A 71 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=54770 # 2arcA.18.61 read from T0547.t04.many.frag # found chain 2arcA in training set T0547 18 :NGKVCINYE 2arcA 68 :PGDILLFPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=54771 # 1dgwY.18.11 read from T0547.t04.many.frag # found chain 1dgwY in template set Warning: unaligning (T0547)N18 (1dgwY)E342 because P (beta_P) conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1dgwY 343 :GDIIVIPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=54772 # 1iwmA.18.78 read from T0547.t04.many.frag # found chain 1iwmA in template set Warning: unaligning (T0547)N18 (1iwmA)P79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1iwmA)N81 because E (beta_S) conformation "forbidden" or filtered. T0547 19 :G 1iwmA 80 :G T0547 21 :VCINYE 1iwmA 82 :VQLVDN Number of specific fragments extracted= 2 number of extra gaps= 2 total=54774 # 2b8mA.18.54 read from T0547.t04.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)N24 (2b8mA)T60 because E (beta_S) conformation "forbidden" or filtered. T0547 18 :NGKVCI 2b8mA 54 :KGEMTL T0547 25 :YE 2b8mA 61 :LE Number of specific fragments extracted= 2 number of extra gaps= 1 total=54776 # 1kpf.18.48 read from T0547.t04.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)G19 (1kpf)T50 because E (beta_S) conformation "forbidden" or filtered. T0547 18 :N 1kpf 49 :P T0547 20 :KVCINYE 1kpf 51 :HFLVIPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=54778 # 2a8kA.19.70 read from T0547.t04.many.frag # found chain 2a8kA in template set T0547 19 :GKVCINYEK 2a8kA 71 :GKYVVVNDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=54779 # 2aukA.19.23 read from T0547.t04.many.frag # found chain 2aukA in template set Warning: unaligning (T0547)N24 (2aukA)N29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (2aukA)G32 because L (left) conformation "forbidden" or filtered. T0547 19 :GKVCI 2aukA 24 :VKSVV T0547 25 :YE 2aukA 30 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=54781 # 1xiwB.19.9 read from T0547.t04.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)K27 (1xiwB)T18 because Y (epsilon') conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1xiwB 10 :DRVFVNCN Number of specific fragments extracted= 1 number of extra gaps= 1 total=54782 # 1vqoE.19.18 read from T0547.t04.many.frag # found chain 1vqoE in template set Warning: unaligning (T0547)G19 (1vqoE)L18 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1vqoE)N26 because G (3-10) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1vqoE 19 :DITVEGD Number of specific fragments extracted= 1 number of extra gaps= 2 total=54783 # 1kg0C.19.27 read from T0547.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)G19 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1kg0C)G113 Warning: unaligning (T0547)K27 (1kg0C)K121 because P (beta_P) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1kg0C 114 :CCFYFTK Number of specific fragments extracted= 1 number of extra gaps= 2 total=54784 # 1v8qA.19.33 read from T0547.t04.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)K27 (1v8qA)G42 because Y (epsilon') conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1v8qA 34 :GNILVRQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=54785 # 1ouoA.19.130 read from T0547.t04.many.frag # found chain 1ouoA in template set Warning: unaligning (T0547)N24 (1ouoA)N154 because D (zeta) conformation "forbidden" or filtered. T0547 19 :GKVCI 1ouoA 149 :CEMQV T0547 25 :YEK 1ouoA 155 :FKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=54787 # 2f6eA.19.18 read from T0547.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)E26 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. T0547 19 :GKVCINY 2f6eA 20 :NKNFYFR T0547 27 :K 2f6eA 28 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=54789 # 1o4yA.19.196 read from T0547.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0547)K27 (1o4yA)G221 because T (delta_L) conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1o4yA 213 :FTLEYYID Number of specific fragments extracted= 1 number of extra gaps= 1 total=54790 # 1dqgA.19.51 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)N24 (1dqgA)G57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1dqgA)S60 because Y (epsilon') conformation "forbidden" or filtered. T0547 19 :GKVCI 1dqgA 52 :FKLCL T0547 25 :YE 1dqgA 58 :VP Number of specific fragments extracted= 2 number of extra gaps= 2 total=54792 # 1xk5A.19.40 read from T0547.t04.many.frag # found chain 1xk5A in template set Warning: unaligning (T0547)K20 (1xk5A)S138 because Y (epsilon') conformation "forbidden" or filtered. T0547 19 :G 1xk5A 137 :G T0547 21 :VCINYEK 1xk5A 139 :TSAYTKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=54794 # 1qwyA.19.31 read from T0547.t04.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)K20 (1qwyA)D58 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1qwyA)G65 because T (delta_L) conformation "forbidden" or filtered. T0547 19 :G 1qwyA 57 :G T0547 21 :VCINYE 1qwyA 59 :YHHTPD Number of specific fragments extracted= 2 number of extra gaps= 2 total=54796 # 1wjxA.19.101 read from T0547.t04.many.frag # found chain 1wjxA in training set T0547 19 :GKVCINYEK 1wjxA 102 :LKIYFNERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=54797 # 1nbcA.19.55 read from T0547.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0547)K20 (1nbcA)H57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1nbcA)I61 because E (beta_S) conformation "forbidden" or filtered. T0547 19 :G 1nbcA 56 :D T0547 21 :VCI 1nbcA 58 :AAI T0547 25 :YEK 1nbcA 62 :GSN Number of specific fragments extracted= 3 number of extra gaps= 2 total=54800 # 1u0fA.19.48 read from T0547.t04.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)K20 (1u0fA)H49 because E (beta_S) conformation "forbidden" or filtered. T0547 19 :G 1u0fA 48 :G T0547 21 :VCINYEK 1u0fA 50 :ILVDYSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=54802 # 1b9wA.19.59 read from T0547.t04.many.frag # found chain 1b9wA in training set Warning: unaligning (T0547)K27 (1b9wA)N68 because L (left) conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1b9wA 60 :AECKMNDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=54803 # 1r6jA.19.24 read from T0547.t04.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)K27 (1r6jA)D224 because T (delta_L) conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1r6jA 216 :GKITSIVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=54804 # 1jiwI.19.65 read from T0547.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)K20 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 19 :G 1jiwI 66 :A T0547 21 :VCINYEK 1jiwI 68 :IALLERG Number of specific fragments extracted= 2 number of extra gaps= 1 total=54806 # 2cyjA.19.19 read from T0547.t04.many.frag # found chain 2cyjA in training set T0547 19 :GKVCINYEK 2cyjA 20 :HDIVIYPSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=54807 # 1vp6A.19.60 read from T0547.t04.many.frag # found chain 1vp6A in training set T0547 19 :GKVCINYEK 1vp6A 278 :GSVSVATPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=54808 # 1onwA.19.32 read from T0547.t04.many.frag # found chain 1onwA in training set T0547 19 :GKVCINYEK 1onwA 33 :GKIIAVASN Number of specific fragments extracted= 1 number of extra gaps= 0 total=54809 # 1ifrA.19.35 read from T0547.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0547)K20 (1ifrA)Q468 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1ifrA)D475 because G (3-10) conformation "forbidden" or filtered. T0547 19 :G 1ifrA 467 :W T0547 21 :VCINYE 1ifrA 469 :IKRQNG Number of specific fragments extracted= 2 number of extra gaps= 2 total=54811 # 1mj4A.19.27 read from T0547.t04.many.frag # found chain 1mj4A in training set T0547 19 :GKVCINYEK 1mj4A 28 :SEVFDVTEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=54812 # 2b8mA.19.55 read from T0547.t04.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)E26 (2b8mA)E62 because S (epsilon) conformation "forbidden" or filtered. T0547 19 :GKVCINY 2b8mA 55 :GEMTLTL T0547 27 :K 2b8mA 63 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=54814 # 1gmuA.19.52 read from T0547.t04.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)N24 (1gmuA)N58 because P (beta_P) conformation "forbidden" or filtered. T0547 19 :GKVCI 1gmuA 53 :GDVLS T0547 25 :YEK 1gmuA 59 :EEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=54816 1hcnB expands to /projects/compbio/data/pdb/1hcn.pdb.gz 1hcnB:# 1hcnB.19.13 read from T0547.t04.many.frag # adding 1hcnB to template set # found chain 1hcnB in template set Warning: unaligning (T0547)N24 (1hcnB)E19 because E (beta_S) conformation "forbidden" or filtered. T0547 19 :GKVCI 1hcnB 14 :ATLAV T0547 25 :YEK 1hcnB 20 :KEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=54818 # 1dgwY.19.12 read from T0547.t04.many.frag # found chain 1dgwY in template set Warning: unaligning (T0547)E26 (1dgwY)S350 because P (beta_P) conformation "forbidden" or filtered. T0547 19 :GKVCINY 1dgwY 343 :GDIIVIP T0547 27 :K 1dgwY 351 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=54820 # 1pgl2.19.196 read from T0547.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0547)K20 (1pgl2)G198 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1pgl2)G205 because Y (epsilon') conformation "forbidden" or filtered. T0547 19 :G 1pgl2 197 :M T0547 21 :VCINYE 1pgl2 199 :KLTFPQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=54822 # 1rutX.19.109 read from T0547.t04.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)N24 (1rutX)Y130 because E (beta_S) conformation "forbidden" or filtered. T0547 19 :GKVCI 1rutX 125 :GDRFH T0547 25 :YEK 1rutX 131 :ING Number of specific fragments extracted= 2 number of extra gaps= 1 total=54824 # 1tf5A.19.313 read from T0547.t04.many.frag # found chain 1tf5A in template set T0547 19 :GKVCINYEK 1tf5A 311 :GQVVIVDSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=54825 # 1kg0C.20.28 read from T0547.t04.many.frag # found chain 1kg0C in template set T0547 20 :KVCINYEKK 1kg0C 114 :CCFYFTKKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=54826 # 2a8kA.20.71 read from T0547.t04.many.frag # found chain 2a8kA in template set T0547 20 :KVCINYEKK 2a8kA 72 :KYVVVNDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=54827 # 2aukA.20.24 read from T0547.t04.many.frag # found chain 2aukA in template set T0547 20 :KVCINYEKK 2aukA 25 :KSVVNSSGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=54828 # 1xiwB.20.10 read from T0547.t04.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)K20 (1xiwB)R11 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINYEKK 1xiwB 12 :VFVNCNTS Number of specific fragments extracted= 1 number of extra gaps= 1 total=54829 # 1vqoE.20.19 read from T0547.t04.many.frag # found chain 1vqoE in template set T0547 20 :KVCINYEKK 1vqoE 19 :DITVEGDNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=54830 # 2f6eA.20.19 read from T0547.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)E26 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (2f6eA)G28 because T (delta_L) conformation "forbidden" or filtered. T0547 20 :KVCINY 2f6eA 21 :KNFYFR T0547 28 :K 2f6eA 29 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=54832 # 2cyjA.20.20 read from T0547.t04.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)K27 (2cyjA)G28 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (2cyjA)R29 because P (beta_P) conformation "forbidden" or filtered. T0547 20 :KVCINYE 2cyjA 21 :DIVIYPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=54833 # 1dqgA.20.52 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)C22 (1dqgA)C55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1dqgA)G57 because Y (epsilon') conformation "forbidden" or filtered. T0547 20 :KV 1dqgA 53 :KL T0547 23 :I 1dqgA 56 :L T0547 25 :YEKK 1dqgA 58 :VPSK Number of specific fragments extracted= 3 number of extra gaps= 2 total=54836 # 1qwyA.20.32 read from T0547.t04.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)K27 (1qwyA)G65 because T (delta_L) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1qwyA 58 :DYHHTPD T0547 28 :K 1qwyA 66 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=54838 # 1o4yA.20.197 read from T0547.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0547)E26 (1o4yA)D220 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1o4yA)G221 because T (delta_L) conformation "forbidden" or filtered. T0547 20 :KVCINY 1o4yA 214 :TLEYYI T0547 28 :K 1o4yA 222 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=54840 # 1v8qA.20.34 read from T0547.t04.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)K27 (1v8qA)G42 because Y (epsilon') conformation "forbidden" or filtered. T0547 20 :KVCINYE 1v8qA 35 :NILVRQR T0547 28 :K 1v8qA 43 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=54842 # 1hcnB.20.14 read from T0547.t04.many.frag # found chain 1hcnB in template set Warning: unaligning (T0547)K27 (1hcnB)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1hcnB 15 :TLAVEKE T0547 28 :K 1hcnB 23 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=54844 # 1jkeA.20.9 read from T0547.t04.many.frag # found chain 1jkeA in training set Warning: unaligning (T0547)K20 (1jkeA)R10 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1jkeA)E16 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1jkeA)G17 because T (delta_L) conformation "forbidden" or filtered. T0547 21 :VCINY 1jkeA 11 :ASVTV T0547 28 :K 1jkeA 18 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=54846 # 1nbcA.20.56 read from T0547.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0547)K20 (1nbcA)H57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1nbcA)G65 because T (delta_L) conformation "forbidden" or filtered. T0547 21 :VCINYEK 1nbcA 58 :AAIIGSN Number of specific fragments extracted= 1 number of extra gaps= 2 total=54847 # 1u0fA.20.49 read from T0547.t04.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)Y25 (1u0fA)Y54 because G (3-10) conformation "forbidden" or filtered. T0547 20 :KVCIN 1u0fA 49 :HILVD T0547 26 :EKK 1u0fA 55 :SKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=54849 # 2b8mA.20.56 read from T0547.t04.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)E26 (2b8mA)E62 because S (epsilon) conformation "forbidden" or filtered. T0547 20 :KVCINY 2b8mA 56 :EMTLTL T0547 27 :KK 2b8mA 63 :DQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=54851 # 1ouoA.20.131 read from T0547.t04.many.frag # found chain 1ouoA in template set Warning: unaligning (T0547)N24 (1ouoA)N154 because D (zeta) conformation "forbidden" or filtered. T0547 20 :KVCI 1ouoA 150 :EMQV T0547 25 :YEKK 1ouoA 155 :FKQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=54853 # 1b9wA.20.60 read from T0547.t04.many.frag # found chain 1b9wA in training set Warning: unaligning (T0547)K27 (1b9wA)N68 because L (left) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1b9wA 61 :ECKMNDK T0547 28 :K 1b9wA 69 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=54855 # 1m9xC.20.0 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)K20 because first residue in template chain is (1m9xC)P1 T0547 21 :VCINYEKK 1m9xC 2 :IVQNLQGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=54856 # 1gmuA.20.53 read from T0547.t04.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)K20 (1gmuA)D54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1gmuA)G61 because L (left) conformation "forbidden" or filtered. T0547 21 :VCINYE 1gmuA 55 :VLSNEE T0547 28 :K 1gmuA 62 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=54858 # 1r6jA.20.25 read from T0547.t04.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)K27 (1r6jA)D224 because T (delta_L) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1r6jA 217 :KITSIVK T0547 28 :K 1r6jA 225 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=54860 # 1xk5A.20.41 read from T0547.t04.many.frag # found chain 1xk5A in template set T0547 20 :KVCINYEKK 1xk5A 138 :STSAYTKSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=54861 # 1j2lA.20.42 read from T0547.t04.many.frag # found chain 1j2lA in training set Warning: unaligning (T0547)K27 (1j2lA)G50 because S (epsilon) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1j2lA 43 :TICRIAR T0547 28 :K 1j2lA 51 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=54863 # 1ifrA.20.36 read from T0547.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0547)K20 (1ifrA)Q468 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1ifrA)G474 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1ifrA)D476 because P (beta_P) conformation "forbidden" or filtered. T0547 21 :VCINY 1ifrA 469 :IKRQN T0547 27 :K 1ifrA 475 :D Number of specific fragments extracted= 2 number of extra gaps= 3 total=54865 # 1dgwY.20.13 read from T0547.t04.many.frag # found chain 1dgwY in template set T0547 20 :KVCINYEKK 1dgwY 344 :DIIVIPSSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=54866 # 1usyA.20.37 read from T0547.t04.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)K27 (1usyA)G45 because T (delta_L) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1usyA 38 :NFFLDRK T0547 28 :K 1usyA 46 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=54868 # 1yr4B.20.15 read from T0547.t04.many.frag # found chain 1yr4B in template set Warning: unaligning (T0547)K20 (1yr4B)T2016 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1yr4B)G2023 because T (delta_L) conformation "forbidden" or filtered. T0547 21 :VCINYE 1yr4B 2017 :CNCTPT T0547 28 :K 1yr4B 2024 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=54870 # 1wjxA.20.102 read from T0547.t04.many.frag # found chain 1wjxA in training set Warning: unaligning (T0547)K27 (1wjxA)G110 because T (delta_L) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1wjxA 103 :KIYFNER T0547 28 :K 1wjxA 111 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=54872 # 1jiwI.20.66 read from T0547.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)K20 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 21 :VCINYEK 1jiwI 68 :IALLERG Number of specific fragments extracted= 1 number of extra gaps= 2 total=54873 # 1onwA.20.33 read from T0547.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)K27 (1onwA)N41 because L (left) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1onwA 34 :KIIAVAS T0547 28 :K 1onwA 42 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=54875 # 1kg0C.21.29 read from T0547.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)N24 (1kg0C)F118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. T0547 21 :VCI 1kg0C 115 :CFY T0547 25 :YEKK 1kg0C 119 :TKKK Number of specific fragments extracted= 2 number of extra gaps= 2 total=54877 # 2a8kA.21.72 read from T0547.t04.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)P29 (2a8kA)G81 because T (delta_L) conformation "forbidden" or filtered. T0547 21 :VCINYEKK 2a8kA 73 :YVVVNDRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=54878 # 2aukA.21.25 read from T0547.t04.many.frag # found chain 2aukA in template set Warning: unaligning (T0547)K27 (2aukA)G32 because L (left) conformation "forbidden" or filtered. T0547 21 :VCINYE 2aukA 26 :SVVNSS T0547 28 :KP 2aukA 33 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=54880 # 1jkeA.21.10 read from T0547.t04.many.frag # found chain 1jkeA in training set Warning: unaligning (T0547)N24 (1jkeA)T14 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1jkeA)E16 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1jkeA)G17 because T (delta_L) conformation "forbidden" or filtered. T0547 21 :VCI 1jkeA 11 :ASV T0547 25 :Y 1jkeA 15 :V T0547 28 :KP 1jkeA 18 :EV Number of specific fragments extracted= 3 number of extra gaps= 2 total=54883 # 1vqoE.21.20 read from T0547.t04.many.frag # found chain 1vqoE in template set Warning: unaligning (T0547)Y25 (1vqoE)G24 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1vqoE)G27 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1vqoE)S28 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCIN 1vqoE 20 :ITVE T0547 26 :EK 1vqoE 25 :DN Number of specific fragments extracted= 2 number of extra gaps= 2 total=54885 # 1xiwB.21.11 read from T0547.t04.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)K27 (1xiwB)T18 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1xiwB)I20 because D (zeta) conformation "forbidden" or filtered. T0547 21 :VCINYE 1xiwB 12 :VFVNCN T0547 28 :K 1xiwB 19 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=54887 # 1m9xC.21.1 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)K27 (1m9xC)G8 because T (delta_L) conformation "forbidden" or filtered. T0547 21 :VCINYE 1m9xC 2 :IVQNLQ T0547 28 :KP 1m9xC 9 :QM Number of specific fragments extracted= 2 number of extra gaps= 1 total=54889 # 1d0dA.21.22 read from T0547.t04.many.frag # found chain 1d0dA in training set Warning: unaligning (T0547)N24 (1d0dA)F26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1d0dA)G29 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1d0dA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 21 :VCI 1d0dA 23 :RAY T0547 25 :YE 1d0dA 27 :RN T0547 28 :K 1d0dA 30 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=54892 # 2b8mA.21.57 read from T0547.t04.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)E26 (2b8mA)E62 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (2b8mA)Q64 because P (beta_P) conformation "forbidden" or filtered. T0547 21 :VCINY 2b8mA 57 :MTLTL T0547 27 :K 2b8mA 63 :D T0547 29 :P 2b8mA 65 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=54895 # 2f6eA.21.20 read from T0547.t04.many.frag # found chain 2f6eA in template set T0547 21 :VCINYEKKP 2f6eA 22 :NFYFRNGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=54896 # 1ifrA.21.37 read from T0547.t04.many.frag # found chain 1ifrA in training set T0547 21 :VCINYEKKP 1ifrA 469 :IKRQNGDDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=54897 # 1nbcA.21.57 read from T0547.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0547)K27 (1nbcA)N64 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1nbcA)G65 because T (delta_L) conformation "forbidden" or filtered. T0547 21 :VCINYE 1nbcA 58 :AAIIGS T0547 29 :P 1nbcA 66 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=54899 # 1xk5A.21.42 read from T0547.t04.many.frag # found chain 1xk5A in template set Warning: unaligning (T0547)K28 (1xk5A)G146 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1xk5A)Y147 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINYEK 1xk5A 139 :TSAYTKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=54900 # 1v8qA.21.35 read from T0547.t04.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)K27 (1v8qA)G42 because Y (epsilon') conformation "forbidden" or filtered. T0547 21 :VCINYE 1v8qA 36 :ILVRQR T0547 28 :KP 1v8qA 43 :TR Number of specific fragments extracted= 2 number of extra gaps= 1 total=54902 # 1jiwI.21.67 read from T0547.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)K28 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 21 :VCINYEK 1jiwI 68 :IALLERG T0547 29 :P 1jiwI 76 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=54904 # 1o4yA.21.198 read from T0547.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0547)E26 (1o4yA)D220 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1o4yA)V222 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINY 1o4yA 215 :LEYYI T0547 27 :K 1o4yA 221 :G T0547 29 :P 1o4yA 223 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=54907 # 1hcnB.21.15 read from T0547.t04.many.frag # found chain 1hcnB in template set Warning: unaligning (T0547)K27 (1hcnB)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 21 :VCINYE 1hcnB 16 :LAVEKE T0547 28 :KP 1hcnB 23 :CP Number of specific fragments extracted= 2 number of extra gaps= 1 total=54909 # 1j2lA.21.43 read from T0547.t04.many.frag # found chain 1j2lA in training set Warning: unaligning (T0547)C22 (1j2lA)C45 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1j2lA)F52 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :V 1j2lA 44 :I T0547 23 :INYEKK 1j2lA 46 :RIARGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=54911 # 1b9wA.21.61 read from T0547.t04.many.frag # found chain 1b9wA in training set T0547 21 :VCINYEKKP 1b9wA 62 :CKMNDKNEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=54912 # 1ouoA.21.132 read from T0547.t04.many.frag # found chain 1ouoA in template set Warning: unaligning (T0547)N24 (1ouoA)N154 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1ouoA)R158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1ouoA)K159 because Y (epsilon') conformation "forbidden" or filtered. T0547 21 :VCI 1ouoA 151 :MQV T0547 25 :YEK 1ouoA 155 :FKQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=54914 # 1kr4A.21.58 read from T0547.t04.many.frag # found chain 1kr4A in training set T0547 21 :VCINYEKKP 1kr4A 43 :SGYWWKGEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=54915 # 1dqgA.21.53 read from T0547.t04.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)C22 (1dqgA)C55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1dqgA)S60 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1dqgA)T62 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :V 1dqgA 54 :L T0547 23 :INYE 1dqgA 56 :LGVP T0547 28 :K 1dqgA 61 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=54918 # 1u0fA.21.50 read from T0547.t04.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)Y25 (1u0fA)Y54 because G (3-10) conformation "forbidden" or filtered. T0547 21 :VCIN 1u0fA 50 :ILVD T0547 26 :EKKP 1u0fA 55 :SKNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=54920 # 1r6jA.21.26 read from T0547.t04.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)I23 (1r6jA)S220 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1r6jA)I221 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1r6jA)S225 because P (beta_P) conformation "forbidden" or filtered. T0547 21 :VC 1r6jA 218 :IT T0547 25 :YEK 1r6jA 222 :VKD T0547 29 :P 1r6jA 226 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=54923 # 1my7A.21.35 read from T0547.t04.many.frag # found chain 1my7A in training set Warning: unaligning (T0547)K27 (1my7A)G232 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1my7A)E234 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINYE 1my7A 226 :VYFTGP T0547 28 :K 1my7A 233 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=54925 # 1rutX.21.111 read from T0547.t04.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)C22 (1rutX)F128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1rutX)N132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1rutX)S134 because P (beta_P) conformation "forbidden" or filtered. T0547 21 :V 1rutX 127 :R T0547 23 :INY 1rutX 129 :HYI T0547 27 :K 1rutX 133 :G T0547 29 :P 1rutX 135 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=54929 # 1r8gA.21.20 read from T0547.t04.many.frag # found chain 1r8gA in template set Warning: unaligning (T0547)E26 (1r8gA)P26 because C (cis) conformation "forbidden" or filtered. T0547 21 :VCINY 1r8gA 21 :QVVNP T0547 27 :KKP 1r8gA 27 :GYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=54931 # 3chbD.21.27 read from T0547.t04.many.frag # found chain 3chbD in training set Warning: unaligning (T0547)K28 (3chbD)K34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (3chbD)R35 because G (3-10) conformation "forbidden" or filtered. T0547 21 :VCINYEK 3chbD 27 :YTESLAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=54932 # 1qwyA.21.33 read from T0547.t04.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)K27 (1qwyA)G65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1qwyA)W67 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINYE 1qwyA 59 :YHHTPD T0547 28 :K 1qwyA 66 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=54934 # 2cyjA.21.21 read from T0547.t04.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)K27 (2cyjA)G28 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (2cyjA)R29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2cyjA)I30 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINYE 2cyjA 22 :IVIYPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=54935 # 1m9xC.22.2 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)K27 (1m9xC)G8 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1m9xC)Q9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1m9xC)V11 because Y (epsilon') conformation "forbidden" or filtered. T0547 22 :CINYE 1m9xC 3 :VQNLQ T0547 29 :P 1m9xC 10 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=54937 # 1d0dA.22.23 read from T0547.t04.many.frag # found chain 1d0dA in training set Warning: unaligning (T0547)P29 (1d0dA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 22 :CINYEKK 1d0dA 24 :AYFRNGK T0547 30 :A 1d0dA 32 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=54939 # 1kg0C.22.30 read from T0547.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)K28 (1kg0C)K122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. T0547 22 :CINYEK 1kg0C 116 :FYFTKK T0547 30 :A 1kg0C 124 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=54941 # 2a8kA.22.73 read from T0547.t04.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)P29 (2a8kA)G81 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (2a8kA)E82 because P (beta_P) conformation "forbidden" or filtered. T0547 22 :CINYEKK 2a8kA 74 :VVVNDRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=54942 # 1ifrA.22.38 read from T0547.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0547)K28 (1ifrA)D476 because P (beta_P) conformation "forbidden" or filtered. T0547 22 :CINYEK 1ifrA 470 :KRQNGD T0547 29 :PA 1ifrA 477 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=54944 # 1jiwI.22.68 read from T0547.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)K28 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 22 :CINYEK 1jiwI 69 :ALLERG T0547 29 :PA 1jiwI 76 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=54946 # 2aukA.22.26 read from T0547.t04.many.frag # found chain 2aukA in template set Warning: unaligning (T0547)K27 (2aukA)G32 because L (left) conformation "forbidden" or filtered. T0547 22 :CINYE 2aukA 27 :VVNSS T0547 28 :KPA 2aukA 33 :KLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54948 # 1xk5A.22.43 read from T0547.t04.many.frag # found chain 1xk5A in template set Warning: unaligning (T0547)P29 (1xk5A)Y147 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINYEKK 1xk5A 140 :SAYTKSG T0547 30 :A 1xk5A 148 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=54950 # 1jkeA.22.11 read from T0547.t04.many.frag # found chain 1jkeA in training set Warning: unaligning (T0547)K27 (1jkeA)G17 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1jkeA)E18 because P (beta_P) conformation "forbidden" or filtered. T0547 22 :CINYE 1jkeA 12 :SVTVE T0547 29 :PA 1jkeA 19 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=54952 # 1xiwB.22.12 read from T0547.t04.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)K27 (1xiwB)T18 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1xiwB)I20 because D (zeta) conformation "forbidden" or filtered. T0547 22 :CINYE 1xiwB 13 :FVNCN T0547 28 :K 1xiwB 19 :S T0547 30 :A 1xiwB 21 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=54955 # 1kr4A.22.59 read from T0547.t04.many.frag # found chain 1kr4A in training set Warning: unaligning (T0547)N24 (1kr4A)W46 because P (beta_P) conformation "forbidden" or filtered. T0547 22 :CI 1kr4A 44 :GY T0547 25 :YEKKPA 1kr4A 47 :WKGEIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54957 # 1vqoE.22.21 read from T0547.t04.many.frag # found chain 1vqoE in template set Warning: unaligning (T0547)P29 (1vqoE)S28 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINYEKK 1vqoE 21 :TVEGDNG T0547 30 :A 1vqoE 29 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=54959 # 2b8mA.22.58 read from T0547.t04.many.frag # found chain 2b8mA in training set T0547 22 :CINYEKKPA 2b8mA 58 :TLTLEDQEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=54960 1utyA expands to /projects/compbio/data/pdb/1uty.pdb.gz 1utyA:Skipped atom 466, because occupancy 0.350 <= existing 0.650 in 1utyA Skipped atom 467, because occupancy 0.350 <= existing 0.650 in 1utyA Skipped atom 468, because occupancy 0.350 <= existing 0.650 in 1utyA Skipped atom 469, because occupancy 0.350 <= existing 0.650 in 1utyA # 1utyA.22.106 read from T0547.t04.many.frag # adding 1utyA to template set # found chain 1utyA in template set Warning: unaligning (T0547)C22 because of BadResidue code BAD_PEPTIDE at template residue (1utyA)R107 Warning: unaligning (T0547)E26 (1utyA)N111 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1utyA)G112 because L (left) conformation "forbidden" or filtered. T0547 23 :INY 1utyA 108 :VQY T0547 28 :KPA 1utyA 113 :VMV Number of specific fragments extracted= 2 number of extra gaps= 2 total=54962 # 2f6eA.22.21 read from T0547.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)E26 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. T0547 22 :CINY 2f6eA 23 :FYFR T0547 27 :KKPA 2f6eA 28 :GLPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=54964 # 1j2lA.22.44 read from T0547.t04.many.frag # found chain 1j2lA in training set Warning: unaligning (T0547)P29 (1j2lA)F52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1j2lA)P53 because P (beta_P) conformation "forbidden" or filtered. T0547 22 :CINYEKK 1j2lA 45 :CRIARGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=54965 # 1my7A.22.36 read from T0547.t04.many.frag # found chain 1my7A in training set Warning: unaligning (T0547)K27 (1my7A)G232 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1my7A)E234 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1my7A)A235 because Y (epsilon') conformation "forbidden" or filtered. T0547 22 :CINYE 1my7A 227 :YFTGP T0547 28 :K 1my7A 233 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=54967 # 1b9wA.22.62 read from T0547.t04.many.frag # found chain 1b9wA in training set Warning: unaligning (T0547)K27 (1b9wA)N68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1b9wA)V71 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINYE 1b9wA 63 :KMNDK T0547 28 :KP 1b9wA 69 :EI Number of specific fragments extracted= 2 number of extra gaps= 2 total=54969 # 1l9vA.22.187 read from T0547.t04.many.frag # found chain 1l9vA in template set T0547 22 :CINYEKKPA 1l9vA 188 :KVTLNEDKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=54970 # 1hcnB.22.16 read from T0547.t04.many.frag # found chain 1hcnB in template set Warning: unaligning (T0547)K27 (1hcnB)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 22 :CINYE 1hcnB 17 :AVEKE T0547 28 :KPA 1hcnB 23 :CPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=54972 # 2c60A.22.34 read from T0547.t04.many.frag # found chain 2c60A in training set Warning: unaligning (T0547)E26 (2c60A)N52 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2c60A)R55 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINY 2c60A 48 :KFEH T0547 27 :KK 2c60A 53 :GE T0547 30 :A 2c60A 56 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=54975 # 1od3A.22.61 read from T0547.t04.many.frag # found chain 1od3A in training set Warning: unaligning (T0547)P29 (1od3A)S52 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINYEKK 1od3A 45 :FSLPGGG T0547 30 :A 1od3A 53 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=54977 # 1o4yA.22.199 read from T0547.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0547)N24 (1o4yA)Y218 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1o4yA)D220 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1o4yA)G221 because T (delta_L) conformation "forbidden" or filtered. T0547 22 :CI 1o4yA 216 :EY T0547 25 :Y 1o4yA 219 :I T0547 28 :KPA 1o4yA 222 :VKV Number of specific fragments extracted= 3 number of extra gaps= 2 total=54980 # 1r6jA.22.27 read from T0547.t04.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)E26 (1r6jA)K223 because P (beta_P) conformation "forbidden" or filtered. T0547 22 :CINY 1r6jA 219 :TSIV T0547 27 :KKPA 1r6jA 224 :DSSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=54982 # 1rutX.22.112 read from T0547.t04.many.frag # found chain 1rutX in training set T0547 22 :CINYEKKPA 1rutX 128 :FHYINGSLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=54983 # 2biwA.22.154 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)P29 (2biwA)L162 because L (left) conformation "forbidden" or filtered. T0547 22 :CINYEKK 2biwA 155 :HRLEPSN T0547 30 :A 2biwA 163 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=54985 # 1v8qA.22.36 read from T0547.t04.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)K27 (1v8qA)G42 because Y (epsilon') conformation "forbidden" or filtered. T0547 22 :CINYE 1v8qA 37 :LVRQR T0547 28 :KPA 1v8qA 43 :TRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=54987 # 2c5qA.22.36 read from T0547.t04.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)P29 (2c5qA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 22 :CINYEKK 2c5qA 37 :ISPPQNS T0547 30 :A 2c5qA 45 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=54989 1yfuA expands to /projects/compbio/data/pdb/1yfu.pdb.gz 1yfuA:# 1yfuA.22.68 read from T0547.t04.many.frag # adding 1yfuA to template set # found chain 1yfuA in template set Warning: unaligning (T0547)E26 (1yfuA)D73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1yfuA)G74 because L (left) conformation "forbidden" or filtered. T0547 22 :CINY 1yfuA 69 :NLWV T0547 28 :KPA 1yfuA 75 :RRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=54991 # 2tgi.22.88 read from T0547.t04.many.frag # found chain 2tgi in training set T0547 22 :CINYEKKPA 2tgi 89 :LYYIGKTPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=54992 # 1m9xC.23.3 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)A30 (1m9xC)V11 because Y (epsilon') conformation "forbidden" or filtered. T0547 23 :INYEKKP 1m9xC 4 :QNLQGQM T0547 31 :I 1m9xC 12 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=54994 # 1kg0C.23.31 read from T0547.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)K27 (1kg0C)K121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. T0547 23 :INYE 1kg0C 117 :YFTK T0547 28 :K 1kg0C 122 :K T0547 30 :AI 1kg0C 124 :TW Number of specific fragments extracted= 3 number of extra gaps= 2 total=54997 # 1jiwI.23.69 read from T0547.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0547)A30 (1jiwI)T77 because P (beta_P) conformation "forbidden" or filtered. T0547 23 :INYEKKP 1jiwI 70 :LLERGGL T0547 31 :I 1jiwI 78 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=54999 # 2aukA.23.27 read from T0547.t04.many.frag # found chain 2aukA in template set Warning: unaligning (T0547)N24 (2aukA)N29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (2aukA)G32 because L (left) conformation "forbidden" or filtered. T0547 23 :I 2aukA 28 :V T0547 25 :YE 2aukA 30 :SS T0547 28 :KPAI 2aukA 33 :KLVI Number of specific fragments extracted= 3 number of extra gaps= 2 total=55002 # 1xk5A.23.44 read from T0547.t04.many.frag # found chain 1xk5A in template set Warning: unaligning (T0547)P29 (1xk5A)Y147 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYEKK 1xk5A 141 :AYTKSG T0547 30 :AI 1xk5A 148 :CV Number of specific fragments extracted= 2 number of extra gaps= 1 total=55004 # 1d0dA.23.24 read from T0547.t04.many.frag # found chain 1d0dA in training set Warning: unaligning (T0547)K27 (1d0dA)G29 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1d0dA)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1d0dA)G32 because Y (epsilon') conformation "forbidden" or filtered. T0547 23 :INYE 1d0dA 25 :YFRN T0547 28 :K 1d0dA 30 :K T0547 31 :I 1d0dA 33 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=55007 # 1utyA.23.107 read from T0547.t04.many.frag # found chain 1utyA in template set Warning: unaligning (T0547)E26 (1utyA)N111 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1utyA)G112 because L (left) conformation "forbidden" or filtered. T0547 23 :INY 1utyA 108 :VQY T0547 28 :KPAI 1utyA 113 :VMVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=55009 # 1ifrA.23.39 read from T0547.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0547)E26 (1ifrA)G474 because S (epsilon) conformation "forbidden" or filtered. T0547 23 :INY 1ifrA 471 :RQN T0547 27 :KKPAI 1ifrA 475 :DDPLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55011 # 2a8kA.23.74 read from T0547.t04.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)P29 (2a8kA)G81 because T (delta_L) conformation "forbidden" or filtered. T0547 23 :INYEKK 2a8kA 75 :VVNDRT T0547 30 :AI 2a8kA 82 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=55013 # 1jkeA.23.12 read from T0547.t04.many.frag # found chain 1jkeA in training set T0547 23 :INYEKKPAI 1jkeA 13 :VTVEGEVTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=55014 # 1kr4A.23.60 read from T0547.t04.many.frag # found chain 1kr4A in training set Warning: unaligning (T0547)E26 (1kr4A)K48 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1kr4A)G49 because T (delta_L) conformation "forbidden" or filtered. T0547 23 :INY 1kr4A 45 :YWW T0547 28 :KPAI 1kr4A 50 :EIVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=55016 # 1b9wA.23.63 read from T0547.t04.many.frag # found chain 1b9wA in training set Warning: unaligning (T0547)K27 (1b9wA)N68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1b9wA)E69 because P (beta_P) conformation "forbidden" or filtered. T0547 23 :INYE 1b9wA 64 :MNDK T0547 29 :PAI 1b9wA 70 :IVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=55018 # 1od3A.23.62 read from T0547.t04.many.frag # found chain 1od3A in training set Warning: unaligning (T0547)K28 (1od3A)G51 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1od3A)S52 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYEK 1od3A 46 :SLPGG T0547 30 :AI 1od3A 53 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55020 # 1vqoE.23.22 read from T0547.t04.many.frag # found chain 1vqoE in template set Warning: unaligning (T0547)P29 (1vqoE)S28 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYEKK 1vqoE 22 :VEGDNG T0547 30 :AI 1vqoE 29 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=55022 # 1my7A.23.37 read from T0547.t04.many.frag # found chain 1my7A in training set Warning: unaligning (T0547)K27 (1my7A)G232 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1my7A)E234 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYE 1my7A 228 :FTGP T0547 28 :K 1my7A 233 :W T0547 30 :AI 1my7A 235 :AR Number of specific fragments extracted= 3 number of extra gaps= 2 total=55025 # 2f6eA.23.22 read from T0547.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)E26 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (2f6eA)G28 because T (delta_L) conformation "forbidden" or filtered. T0547 23 :INY 2f6eA 24 :YFR T0547 28 :KPAI 2f6eA 29 :LPQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55027 # 1xiwB.23.13 read from T0547.t04.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)P29 (1xiwB)I20 because D (zeta) conformation "forbidden" or filtered. T0547 23 :INYEKK 1xiwB 14 :VNCNTS T0547 30 :AI 1xiwB 21 :TW Number of specific fragments extracted= 2 number of extra gaps= 1 total=55029 # 2c60A.23.35 read from T0547.t04.many.frag # found chain 2c60A in training set Warning: unaligning (T0547)E26 (2c60A)N52 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2c60A)R55 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INY 2c60A 49 :FEH T0547 27 :KK 2c60A 53 :GE T0547 30 :AI 2c60A 56 :RI Number of specific fragments extracted= 3 number of extra gaps= 2 total=55032 # 1j2lA.23.45 read from T0547.t04.many.frag # found chain 1j2lA in training set Warning: unaligning (T0547)N24 (1j2lA)I47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1j2lA)F52 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :I 1j2lA 46 :R T0547 25 :YEKK 1j2lA 48 :ARGD T0547 30 :AI 1j2lA 53 :PD Number of specific fragments extracted= 3 number of extra gaps= 2 total=55035 # 2biwA.23.155 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)N24 (2biwA)L157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (2biwA)N161 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2biwA)L162 because L (left) conformation "forbidden" or filtered. T0547 23 :I 2biwA 156 :R T0547 25 :YEK 2biwA 158 :EPS T0547 30 :AI 2biwA 163 :AT Number of specific fragments extracted= 3 number of extra gaps= 2 total=55038 # 1l9vA.23.188 read from T0547.t04.many.frag # found chain 1l9vA in template set T0547 23 :INYEKKPAI 1l9vA 189 :VTLNEDKPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=55039 # 1rmd.23.37 read from T0547.t04.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)K27 (1rmd)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1rmd)H43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rmd)L44 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYE 1rmd 38 :ETSC T0547 30 :AI 1rmd 45 :FC Number of specific fragments extracted= 2 number of extra gaps= 1 total=55041 # 1iwmA.23.84 read from T0547.t04.many.frag # found chain 1iwmA in template set T0547 23 :INYEKKPAI 1iwmA 85 :VDNKGQRYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=55042 # 1hcnB.23.17 read from T0547.t04.many.frag # found chain 1hcnB in template set Warning: unaligning (T0547)E26 (1hcnB)E21 because P (beta_P) conformation "forbidden" or filtered. T0547 23 :INY 1hcnB 18 :VEK T0547 27 :KKPAI 1hcnB 22 :GCPVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=55044 # 1yfuA.23.69 read from T0547.t04.many.frag # found chain 1yfuA in template set Warning: unaligning (T0547)E26 (1yfuA)D73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1yfuA)R75 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INY 1yfuA 70 :LWV T0547 27 :K 1yfuA 74 :G T0547 29 :PAI 1yfuA 76 :RER Number of specific fragments extracted= 3 number of extra gaps= 2 total=55047 # 1vie.23.14 read from T0547.t04.many.frag # found chain 1vie in training set T0547 23 :INYEKKPAI 1vie 31 :RKKSGAAWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=55048 # 1n8yC.23.301 read from T0547.t04.many.frag # found chain 1n8yC in template set Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE in next template residue (1n8yC)D305 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE at template residue (1n8yC)D305 Warning: unaligning (T0547)K27 (1n8yC)G306 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1n8yC)Q308 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :IN 1n8yC 302 :TA T0547 28 :K 1n8yC 307 :T T0547 30 :AI 1n8yC 309 :RC Number of specific fragments extracted= 3 number of extra gaps= 2 total=55051 # 1rutX.23.113 read from T0547.t04.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)E26 (1rutX)N132 because L (left) conformation "forbidden" or filtered. T0547 23 :INY 1rutX 129 :HYI T0547 27 :KKPAI 1rutX 133 :GSLFC Number of specific fragments extracted= 2 number of extra gaps= 1 total=55053 # 1vdkA.23.13 read from T0547.t04.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)N24 (1vdkA)V15 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1vdkA)Y20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I31 (1vdkA)G22 because Y (epsilon') conformation "forbidden" or filtered. T0547 23 :I 1vdkA 14 :R T0547 25 :YEKK 1vdkA 16 :PADK T0547 30 :A 1vdkA 21 :W Number of specific fragments extracted= 3 number of extra gaps= 3 total=55056 # 1w2xA.23.68 read from T0547.t04.many.frag # found chain 1w2xA in template set Warning: unaligning (T0547)N24 (1w2xA)D1545 because P (beta_P) conformation "forbidden" or filtered. T0547 23 :I 1w2xA 1544 :E T0547 25 :YEKKPAI 1w2xA 1546 :ENGELTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=55058 # 1m9xC.24.4 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)N24 (1m9xC)N5 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1m9xC)G8 because T (delta_L) conformation "forbidden" or filtered. T0547 25 :YE 1m9xC 6 :LQ T0547 28 :KPAII 1m9xC 9 :QMVHQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=55060 # 1kg0C.24.32 read from T0547.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)N24 (1kg0C)F118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YEKK 1kg0C 119 :TKKK T0547 30 :AII 1kg0C 124 :TWN Number of specific fragments extracted= 2 number of extra gaps= 2 total=55062 # 2aukA.24.28 read from T0547.t04.many.frag # found chain 2aukA in template set Warning: unaligning (T0547)K27 (2aukA)G32 because L (left) conformation "forbidden" or filtered. T0547 24 :NYE 2aukA 29 :NSS T0547 28 :KPAII 2aukA 33 :KLVIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=55064 # 1xk5A.24.45 read from T0547.t04.many.frag # found chain 1xk5A in template set Warning: unaligning (T0547)K28 (1xk5A)G146 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1xk5A)Y147 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYEK 1xk5A 142 :YTKS T0547 30 :AII 1xk5A 148 :CVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=55066 # 1jiwI.24.70 read from T0547.t04.many.frag # found chain 1jiwI in training set T0547 24 :NYEKKPAII 1jiwI 71 :LERGGLTLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=55067 # 1b9wA.24.64 read from T0547.t04.many.frag # found chain 1b9wA in training set T0547 24 :NYEKKPAII 1b9wA 65 :NDKNEIVCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=55068 # 1rmd.24.38 read from T0547.t04.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)N24 (1rmd)T39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1rmd)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rmd)L44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1rmd)F45 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YE 1rmd 40 :SC T0547 28 :K 1rmd 43 :H T0547 31 :II 1rmd 46 :CR Number of specific fragments extracted= 3 number of extra gaps= 3 total=55071 # 1jkeA.24.13 read from T0547.t04.many.frag # found chain 1jkeA in training set Warning: unaligning (T0547)N24 (1jkeA)T14 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1jkeA)G17 because T (delta_L) conformation "forbidden" or filtered. T0547 25 :YE 1jkeA 15 :VE T0547 28 :KPAII 1jkeA 18 :EVTGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=55073 # 1d0dA.24.25 read from T0547.t04.many.frag # found chain 1d0dA in training set Warning: unaligning (T0547)K27 (1d0dA)G29 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1d0dA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 24 :NYE 1d0dA 26 :FRN T0547 28 :K 1d0dA 30 :K T0547 30 :AII 1d0dA 32 :GCD Number of specific fragments extracted= 3 number of extra gaps= 2 total=55076 # 1my7A.24.38 read from T0547.t04.many.frag # found chain 1my7A in training set Warning: unaligning (T0547)K27 (1my7A)G232 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1my7A)E234 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYE 1my7A 229 :TGP T0547 28 :K 1my7A 233 :W T0547 30 :AII 1my7A 235 :ARG Number of specific fragments extracted= 3 number of extra gaps= 2 total=55079 # 1vykA.24.32 read from T0547.t04.many.frag # found chain 1vykA in training set Warning: unaligning (T0547)Y25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vykA)T34 T0547 26 :EKKPAII 1vykA 35 :KDRFYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=55080 # 2a8kA.24.75 read from T0547.t04.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)P29 (2a8kA)G81 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (2a8kA)E82 because P (beta_P) conformation "forbidden" or filtered. T0547 24 :NYEKK 2a8kA 76 :VNDRT T0547 31 :II 2a8kA 83 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=55082 # 1od3A.24.63 read from T0547.t04.many.frag # found chain 1od3A in training set Warning: unaligning (T0547)N24 (1od3A)L47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1od3A)G51 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1od3A)S52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I32 (1od3A)G55 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YEK 1od3A 48 :PGG T0547 30 :AI 1od3A 53 :AI Number of specific fragments extracted= 2 number of extra gaps= 3 total=55084 # 1kr4A.24.61 read from T0547.t04.many.frag # found chain 1kr4A in training set Warning: unaligning (T0547)E26 (1kr4A)K48 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1kr4A)G49 because T (delta_L) conformation "forbidden" or filtered. T0547 24 :NY 1kr4A 46 :WW T0547 28 :KPAII 1kr4A 50 :EIVQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=55086 # 2biwA.24.156 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)K28 (2biwA)N161 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2biwA)L162 because L (left) conformation "forbidden" or filtered. T0547 24 :NYEK 2biwA 157 :LEPS T0547 30 :AII 2biwA 163 :ATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55088 # 1utyA.24.108 read from T0547.t04.many.frag # found chain 1utyA in template set Warning: unaligning (T0547)E26 (1utyA)N111 because L (left) conformation "forbidden" or filtered. T0547 24 :NY 1utyA 109 :QY T0547 27 :KKPAII 1utyA 112 :GVMVDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=55090 # 1ifrA.24.40 read from T0547.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0547)E26 (1ifrA)G474 because S (epsilon) conformation "forbidden" or filtered. T0547 24 :NY 1ifrA 472 :QN T0547 27 :KKPAII 1ifrA 475 :DDPLLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=55092 # 1xiwB.24.14 read from T0547.t04.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)K27 (1xiwB)T18 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1xiwB)I20 because D (zeta) conformation "forbidden" or filtered. T0547 24 :NYE 1xiwB 15 :NCN T0547 28 :K 1xiwB 19 :S T0547 30 :AII 1xiwB 21 :TWV Number of specific fragments extracted= 3 number of extra gaps= 2 total=55095 # 1vdkA.24.14 read from T0547.t04.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)K27 (1vdkA)D18 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1vdkA)Y20 because G (3-10) conformation "forbidden" or filtered. T0547 24 :NYE 1vdkA 15 :VPA T0547 28 :K 1vdkA 19 :K T0547 30 :AII 1vdkA 21 :WGA Number of specific fragments extracted= 3 number of extra gaps= 2 total=55098 # 1l9vA.24.189 read from T0547.t04.many.frag # found chain 1l9vA in template set Warning: unaligning (T0547)N24 (1l9vA)T190 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YEKKPAII 1l9vA 191 :LNEDKPIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=55099 # 1vqoE.24.23 read from T0547.t04.many.frag # found chain 1vqoE in template set Warning: unaligning (T0547)P29 (1vqoE)S28 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYEKK 1vqoE 23 :EGDNG T0547 30 :AII 1vqoE 29 :VTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=55101 # 1j2lA.24.46 read from T0547.t04.many.frag # found chain 1j2lA in training set Warning: unaligning (T0547)N24 (1j2lA)I47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1j2lA)G50 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1j2lA)F52 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YE 1j2lA 48 :AR T0547 28 :K 1j2lA 51 :D T0547 30 :AII 1j2lA 53 :PDD Number of specific fragments extracted= 3 number of extra gaps= 3 total=55104 # 1n8yC.24.302 read from T0547.t04.many.frag # found chain 1n8yC in template set Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE in next template residue (1n8yC)D305 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE at template residue (1n8yC)D305 Warning: unaligning (T0547)P29 (1n8yC)Q308 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1n8yC)R309 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :N 1n8yC 303 :A T0547 27 :KK 1n8yC 306 :GT T0547 31 :II 1n8yC 310 :CE Number of specific fragments extracted= 3 number of extra gaps= 2 total=55107 # 2c60A.24.36 read from T0547.t04.many.frag # found chain 2c60A in training set Warning: unaligning (T0547)K27 (2c60A)G53 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2c60A)R55 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYE 2c60A 50 :EHN T0547 28 :K 2c60A 54 :E T0547 30 :AII 2c60A 56 :RII Number of specific fragments extracted= 3 number of extra gaps= 2 total=55110 # 2c5qA.24.38 read from T0547.t04.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)P29 (2c5qA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 24 :NYEKK 2c5qA 39 :PPQNS T0547 30 :AII 2c5qA 45 :IVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=55112 # 1iwmA.24.85 read from T0547.t04.many.frag # found chain 1iwmA in template set T0547 24 :NYEKKPAII 1iwmA 86 :DNKGQRYTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55113 # 1vie.24.15 read from T0547.t04.many.frag # found chain 1vie in training set Warning: unaligning (T0547)E26 (1vie)S34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1vie)G35 because S (epsilon) conformation "forbidden" or filtered. T0547 24 :NY 1vie 32 :KK T0547 28 :KPAII 1vie 36 :AAWQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=55115 # 1yfuA.24.70 read from T0547.t04.many.frag # found chain 1yfuA in template set Warning: unaligning (T0547)E26 (1yfuA)D73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1yfuA)G74 because L (left) conformation "forbidden" or filtered. T0547 24 :NY 1yfuA 71 :WV T0547 28 :KPAII 1yfuA 75 :RRERA Number of specific fragments extracted= 2 number of extra gaps= 1 total=55117 # 2f6eA.24.23 read from T0547.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)E26 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I32 (2f6eA)G33 because Y (epsilon') conformation "forbidden" or filtered. T0547 24 :NY 2f6eA 25 :FR T0547 27 :KKPAI 2f6eA 28 :GLPQI Number of specific fragments extracted= 2 number of extra gaps= 2 total=55119 # 1ko6A.24.82 read from T0547.t04.many.frag # found chain 1ko6A in template set Warning: unaligning (T0547)P29 (1ko6A)V764 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYEKK 1ko6A 759 :YFEGD T0547 30 :AII 1ko6A 765 :NLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=55121 # 1m9xC.25.5 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)D33 (1m9xC)A14 because P (beta_P) conformation "forbidden" or filtered. T0547 25 :YEKKPAII 1m9xC 6 :LQGQMVHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=55122 # 1kg0C.25.33 read from T0547.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)K27 (1kg0C)K121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YE 1kg0C 119 :TK T0547 28 :K 1kg0C 122 :K T0547 30 :AIID 1kg0C 124 :TWNG Number of specific fragments extracted= 3 number of extra gaps= 2 total=55125 # 1vykA.25.33 read from T0547.t04.many.frag # found chain 1vykA in training set Warning: unaligning (T0547)Y25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vykA)T34 Warning: unaligning (T0547)K27 (1vykA)D36 because L (left) conformation "forbidden" or filtered. T0547 26 :E 1vykA 35 :K T0547 28 :KPAIID 1vykA 37 :RFYLQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=55127 # 1d0dA.25.26 read from T0547.t04.many.frag # found chain 1d0dA in training set Warning: unaligning (T0547)K27 (1d0dA)G29 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1d0dA)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1d0dA)G32 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YE 1d0dA 27 :RN T0547 28 :K 1d0dA 30 :K T0547 31 :IID 1d0dA 33 :CDS Number of specific fragments extracted= 3 number of extra gaps= 2 total=55130 # 1xk5A.25.46 read from T0547.t04.many.frag # found chain 1xk5A in template set Warning: unaligning (T0547)P29 (1xk5A)Y147 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YEKK 1xk5A 143 :TKSG T0547 30 :AIID 1xk5A 148 :CVNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=55132 # 1ko6A.25.83 read from T0547.t04.many.frag # found chain 1ko6A in template set Warning: unaligning (T0547)P29 (1ko6A)V764 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1ko6A)N768 because L (left) conformation "forbidden" or filtered. T0547 25 :YEKK 1ko6A 760 :FEGD T0547 30 :AII 1ko6A 765 :NLT Number of specific fragments extracted= 2 number of extra gaps= 2 total=55134 # 1l9vA.25.190 read from T0547.t04.many.frag # found chain 1l9vA in template set T0547 25 :YEKKPAIID 1l9vA 191 :LNEDKPISD Number of specific fragments extracted= 1 number of extra gaps= 0 total=55135 # 2a8kA.25.76 read from T0547.t04.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)P29 (2a8kA)G81 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (2a8kA)E82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (2a8kA)Q85 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YEKK 2a8kA 77 :NDRT T0547 31 :II 2a8kA 83 :VT Number of specific fragments extracted= 2 number of extra gaps= 2 total=55137 # 2c5qA.25.39 read from T0547.t04.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)P29 (2c5qA)S44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (2c5qA)I45 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YEKK 2c5qA 40 :PQNS T0547 31 :IID 2c5qA 46 :VGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=55139 # 1rmd.25.39 read from T0547.t04.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)P29 (1rmd)L44 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YEKK 1rmd 40 :SCKH T0547 30 :AIID 1rmd 45 :FCRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55141 # 1my7A.25.39 read from T0547.t04.many.frag # found chain 1my7A in training set Warning: unaligning (T0547)E26 (1my7A)P231 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1my7A)G232 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1my7A)E234 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1my7A)S238 because P (beta_P) conformation "forbidden" or filtered. T0547 25 :Y 1my7A 230 :G T0547 28 :K 1my7A 233 :W T0547 30 :AII 1my7A 235 :ARG Number of specific fragments extracted= 3 number of extra gaps= 3 total=55144 # 1j2zA.25.183 read from T0547.t04.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)E26 (1j2zA)G185 because S (epsilon) conformation "forbidden" or filtered. T0547 25 :Y 1j2zA 184 :E T0547 27 :KKPAIID 1j2zA 186 :NRAFIRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=55146 # 2biwA.25.157 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)K28 (2biwA)N161 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2biwA)L162 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (2biwA)A163 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (2biwA)G166 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YEK 2biwA 158 :EPS T0547 31 :II 2biwA 164 :TI Number of specific fragments extracted= 2 number of extra gaps= 2 total=55148 # 1j2lA.25.47 read from T0547.t04.many.frag # found chain 1j2lA in training set Warning: unaligning (T0547)P29 (1j2lA)F52 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YEKK 1j2lA 48 :ARGD T0547 30 :AIID 1j2lA 53 :PDDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=55150 # 2b6cA.25.22 read from T0547.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0547)K27 (2b6cA)H22 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE in next template residue (2b6cA)V25 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)V25 T0547 25 :YE 2b6cA 20 :MK T0547 28 :K 2b6cA 23 :Q T0547 31 :IID 2b6cA 26 :FAG Number of specific fragments extracted= 3 number of extra gaps= 2 total=55153 # 1od3A.25.64 read from T0547.t04.many.frag # found chain 1od3A in training set Warning: unaligning (T0547)K28 (1od3A)G51 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1od3A)S52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I32 (1od3A)G55 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YEK 1od3A 48 :PGG T0547 30 :AI 1od3A 53 :AI T0547 33 :D 1od3A 56 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=55156 # 1jiwI.25.71 read from T0547.t04.many.frag # found chain 1jiwI in training set T0547 25 :YEKKPAIID 1jiwI 72 :ERGGLTLML Number of specific fragments extracted= 1 number of extra gaps= 0 total=55157 # 1vie.25.16 read from T0547.t04.many.frag # found chain 1vie in training set Warning: unaligning (T0547)E26 (1vie)S34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1vie)A36 because P (beta_P) conformation "forbidden" or filtered. T0547 25 :Y 1vie 33 :K T0547 27 :K 1vie 35 :G T0547 29 :PAIID 1vie 37 :AWQGQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=55160 # 2a9iA.25.41 read from T0547.t04.many.frag # found chain 2a9iA in training set Warning: unaligning (T0547)K27 (2a9iA)G44 because T (delta_L) conformation "forbidden" or filtered. T0547 25 :YE 2a9iA 42 :PS T0547 28 :KPAIID 2a9iA 45 :DDRYNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=55162 # 1xiwB.25.15 read from T0547.t04.many.frag # found chain 1xiwB in template set Warning: unaligning (T0547)P29 (1xiwB)I20 because D (zeta) conformation "forbidden" or filtered. T0547 25 :YEKK 1xiwB 16 :CNTS T0547 30 :AIID 1xiwB 21 :TWVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=55164 # 7odcA.25.13 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 25 :YEKKPAIID 7odcA 14 :LDEGFTAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=55165 # 2ew0A.25.139 read from T0547.t04.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)K27 (2ew0A)G142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2ew0A)W144 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YE 2ew0A 140 :AR T0547 28 :K 2ew0A 143 :D T0547 30 :AIID 2ew0A 145 :LICD Number of specific fragments extracted= 3 number of extra gaps= 2 total=55168 # 1vdkA.25.15 read from T0547.t04.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)K27 (1vdkA)D18 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1vdkA)Y20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I31 (1vdkA)G22 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YE 1vdkA 16 :PA T0547 28 :K 1vdkA 19 :K T0547 30 :A 1vdkA 21 :W T0547 32 :ID 1vdkA 23 :AQ Number of specific fragments extracted= 4 number of extra gaps= 3 total=55172 # 1oewA.25.203 read from T0547.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)Y25 (1oewA)G204 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1oewA)G206 because P (beta_P) conformation "forbidden" or filtered. T0547 26 :E 1oewA 205 :S T0547 28 :KPAIID 1oewA 207 :TFKSTS Number of specific fragments extracted= 2 number of extra gaps= 2 total=55174 # 1n8yC.25.303 read from T0547.t04.many.frag # found chain 1n8yC in template set Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE in next template residue (1n8yC)D305 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE at template residue (1n8yC)D305 Warning: unaligning (T0547)P29 (1n8yC)Q308 because E (beta_S) conformation "forbidden" or filtered. T0547 27 :KK 1n8yC 306 :GT T0547 30 :AIID 1n8yC 309 :RCEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=55176 # 2aukA.25.29 read from T0547.t04.many.frag # found chain 2aukA in template set T0547 25 :YEKKPAIID 2aukA 30 :SSGKLVITS Number of specific fragments extracted= 1 number of extra gaps= 0 total=55177 # 1kqfA.25.114 read from T0547.t04.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)K28 (1kqfA)S118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1kqfA)D119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1kqfA)K120 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YEK 1kqfA 115 :APG T0547 31 :IID 1kqfA 121 :WQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=55179 # 1oxxK.25.14 read from T0547.t04.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)Y25 (1oxxK)K15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1oxxK)V19 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1oxxK)N23 because L (left) conformation "forbidden" or filtered. T0547 26 :EKK 1oxxK 16 :GKV T0547 30 :AII 1oxxK 20 :ALD Number of specific fragments extracted= 2 number of extra gaps= 3 total=55181 # 1yfuA.25.71 read from T0547.t04.many.frag # found chain 1yfuA in template set Warning: unaligning (T0547)E26 (1yfuA)D73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1yfuA)G74 because L (left) conformation "forbidden" or filtered. T0547 25 :Y 1yfuA 72 :V T0547 28 :KPAIID 1yfuA 75 :RRERAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=55183 1sf8A expands to /projects/compbio/data/pdb/1sf8.pdb.gz 1sf8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1sf8A.25.42 read from T0547.t04.many.frag # adding 1sf8A to template set # found chain 1sf8A in template set Warning: unaligning (T0547)P29 (1sf8A)E545 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YEKK 1sf8A 541 :TDAD T0547 30 :AIID 1sf8A 546 :MSTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=55185 # 1m9xC.26.6 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)A30 (1m9xC)V11 because Y (epsilon') conformation "forbidden" or filtered. T0547 26 :EKKP 1m9xC 7 :QGQM T0547 31 :IIDI 1m9xC 12 :HQAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55187 # 1vykA.26.34 read from T0547.t04.many.frag # found chain 1vykA in training set T0547 26 :EKKPAIIDI 1vykA 35 :KDRFYLQPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55188 # 1j2zA.26.184 read from T0547.t04.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)E26 (1j2zA)G185 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1j2zA)F189 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1j2zA)G192 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :KKP 1j2zA 186 :NRA T0547 31 :II 1j2zA 190 :IR T0547 34 :I 1j2zA 193 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=55191 # 1l9vA.26.191 read from T0547.t04.many.frag # found chain 1l9vA in template set Warning: unaligning (T0547)A30 (1l9vA)P196 because P (beta_P) conformation "forbidden" or filtered. T0547 26 :EKKP 1l9vA 192 :NEDK T0547 31 :IIDI 1l9vA 197 :ISDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=55193 # 1d0dA.26.27 read from T0547.t04.many.frag # found chain 1d0dA in training set Warning: unaligning (T0547)K27 (1d0dA)G29 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1d0dA)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1d0dA)G32 because Y (epsilon') conformation "forbidden" or filtered. T0547 26 :E 1d0dA 28 :N T0547 28 :K 1d0dA 30 :K T0547 31 :IIDI 1d0dA 33 :CDSF Number of specific fragments extracted= 3 number of extra gaps= 2 total=55196 # 1kg0C.26.34 read from T0547.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)K27 (1kg0C)K121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1kg0C)K122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. T0547 26 :E 1kg0C 120 :K T0547 30 :AIIDI 1kg0C 124 :TWNGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=55198 # 1ko6A.26.84 read from T0547.t04.many.frag # found chain 1ko6A in template set Warning: unaligning (T0547)P29 (1ko6A)V764 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1ko6A)N768 because L (left) conformation "forbidden" or filtered. T0547 26 :EKK 1ko6A 761 :EGD T0547 30 :AII 1ko6A 765 :NLT T0547 34 :I 1ko6A 769 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=55201 # 1kqfA.26.115 read from T0547.t04.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)K27 (1kqfA)G117 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1kqfA)D119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1kqfA)K120 because Y (epsilon') conformation "forbidden" or filtered. T0547 26 :E 1kqfA 116 :P T0547 28 :K 1kqfA 118 :S T0547 31 :IIDI 1kqfA 121 :WQRI Number of specific fragments extracted= 3 number of extra gaps= 2 total=55204 # 2a8kA.26.77 read from T0547.t04.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)P29 (2a8kA)G81 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (2a8kA)E82 because P (beta_P) conformation "forbidden" or filtered. T0547 26 :EKK 2a8kA 78 :DRT T0547 31 :IIDI 2a8kA 83 :VTQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55206 # 2ew0A.26.140 read from T0547.t04.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)K27 (2ew0A)G142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2ew0A)W144 because E (beta_S) conformation "forbidden" or filtered. T0547 26 :E 2ew0A 141 :R T0547 28 :K 2ew0A 143 :D T0547 30 :AIIDI 2ew0A 145 :LICDA Number of specific fragments extracted= 3 number of extra gaps= 2 total=55209 # 2a9iA.26.42 read from T0547.t04.many.frag # found chain 2a9iA in training set T0547 26 :EKKPAIIDI 2a9iA 43 :SGDDRYNQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=55210 # 1rmd.26.40 read from T0547.t04.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)K27 (1rmd)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1rmd)L44 because E (beta_S) conformation "forbidden" or filtered. T0547 26 :E 1rmd 41 :C T0547 28 :K 1rmd 43 :H T0547 30 :AIIDI 1rmd 45 :FCRIC Number of specific fragments extracted= 3 number of extra gaps= 2 total=55213 # 2c5qA.26.40 read from T0547.t04.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)P29 (2c5qA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 26 :EKK 2c5qA 41 :QNS T0547 30 :AIIDI 2c5qA 45 :IVGTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=55215 # 1ukkA.26.23 read from T0547.t04.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)P29 (1ukkA)A27 because L (left) conformation "forbidden" or filtered. T0547 26 :EKK 1ukkA 24 :QSQ T0547 30 :AIIDI 1ukkA 28 :FQGPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=55217 # 2b6cA.26.23 read from T0547.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE in next template residue (2b6cA)V25 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)V25 T0547 26 :EKK 2b6cA 21 :KHQ T0547 31 :IIDI 2b6cA 26 :FAGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55219 # 1b25A.26.14 read from T0547.t04.many.frag # found chain 1b25A in template set Warning: unaligning (T0547)K27 (1b25A)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1b25A)V18 because E (beta_S) conformation "forbidden" or filtered. T0547 26 :E 1b25A 15 :T T0547 28 :K 1b25A 17 :E T0547 30 :AIIDI 1b25A 19 :KVQEY Number of specific fragments extracted= 3 number of extra gaps= 2 total=55222 # 1oewA.26.204 read from T0547.t04.many.frag # found chain 1oewA in training set T0547 26 :EKKPAIIDI 1oewA 205 :SGTFKSTSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=55223 # 1xk5A.26.47 read from T0547.t04.many.frag # found chain 1xk5A in template set Warning: unaligning (T0547)P29 (1xk5A)Y147 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1xk5A)R151 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I34 (1xk5A)F152 because Y (epsilon') conformation "forbidden" or filtered. T0547 26 :EKK 1xk5A 144 :KSG T0547 30 :AII 1xk5A 148 :CVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=55225 # 2biwA.26.158 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)P29 (2biwA)L162 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (2biwA)G166 because Y (epsilon') conformation "forbidden" or filtered. T0547 26 :EKK 2biwA 159 :PSN T0547 30 :AII 2biwA 163 :ATI T0547 34 :I 2biwA 167 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=55228 # 1my7A.26.40 read from T0547.t04.many.frag # found chain 1my7A in training set Warning: unaligning (T0547)E26 (1my7A)P231 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1my7A)E234 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1my7A)S238 because P (beta_P) conformation "forbidden" or filtered. T0547 27 :KK 1my7A 232 :GW T0547 30 :AII 1my7A 235 :ARG T0547 34 :I 1my7A 239 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=55231 # 1oygA.26.176 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)K27 (1oygA)S204 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1oygA)L206 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1oygA)G210 because Y (epsilon') conformation "forbidden" or filtered. T0547 26 :E 1oygA 203 :D T0547 28 :K 1oygA 205 :S T0547 30 :AII 1oygA 207 :NIN T0547 34 :I 1oygA 211 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=55235 2cy5A expands to /projects/compbio/data/pdb/2cy5.pdb.gz 2cy5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2cy5A.26.65 read from T0547.t04.many.frag # adding 2cy5A to template set # found chain 2cy5A in template set Warning: unaligning (T0547)I32 (2cy5A)E97 because Y (epsilon') conformation "forbidden" or filtered. T0547 26 :EKKPAI 2cy5A 91 :VSKEEL T0547 33 :DI 2cy5A 98 :SY Number of specific fragments extracted= 2 number of extra gaps= 1 total=55237 # 1j2lA.26.48 read from T0547.t04.many.frag # found chain 1j2lA in training set Warning: unaligning (T0547)P29 (1j2lA)F52 because E (beta_S) conformation "forbidden" or filtered. T0547 26 :EKK 1j2lA 49 :RGD T0547 30 :AIIDI 1j2lA 53 :PDDRC Number of specific fragments extracted= 2 number of extra gaps= 1 total=55239 # 1sf8A.26.43 read from T0547.t04.many.frag # found chain 1sf8A in template set Warning: unaligning (T0547)P29 (1sf8A)E545 because E (beta_S) conformation "forbidden" or filtered. T0547 26 :EKK 1sf8A 542 :DAD T0547 30 :AIIDI 1sf8A 546 :MSTQM Number of specific fragments extracted= 2 number of extra gaps= 1 total=55241 # 7odcA.26.14 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 26 :EKKPAIIDI 7odcA 15 :DEGFTAKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=55242 # 1oxxK.26.15 read from T0547.t04.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)E26 (1oxxK)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1oxxK)V19 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1oxxK)N23 because L (left) conformation "forbidden" or filtered. T0547 27 :KK 1oxxK 17 :KV T0547 30 :AII 1oxxK 20 :ALD T0547 34 :I 1oxxK 24 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=55245 # 1n35A.26.632 read from T0547.t04.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)P29 (1n35A)R636 because D (zeta) conformation "forbidden" or filtered. T0547 26 :EKK 1n35A 633 :VGV T0547 30 :AIIDI 1n35A 637 :AARPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55247 # 1nuyA.26.7 read from T0547.t04.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)E26 because first residue in template chain is (1nuyA)T1008 T0547 27 :KKPAIIDI 1nuyA 1009 :NIVTLTRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=55248 # 1vie.26.17 read from T0547.t04.many.frag # found chain 1vie in training set Warning: unaligning (T0547)E26 (1vie)S34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1vie)G35 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1vie)A36 because P (beta_P) conformation "forbidden" or filtered. T0547 29 :PAIIDI 1vie 37 :AWQGQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=55249 1extA expands to /projects/compbio/data/pdb/1ext.pdb.gz 1extA:# 1extA.26.98 read from T0547.t04.many.frag # adding 1extA to template set # found chain 1extA in template set Warning: unaligning (T0547)P29 (1extA)F112 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1extA)N116 because P (beta_P) conformation "forbidden" or filtered. T0547 26 :EKK 1extA 109 :ENL T0547 30 :AII 1extA 113 :QCF T0547 34 :I 1extA 117 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=55252 # 1m9xC.27.7 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)A30 (1m9xC)V11 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :KKP 1m9xC 8 :GQM T0547 31 :IIDIV 1m9xC 12 :HQAIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=55254 # 1ko6A.27.85 read from T0547.t04.many.frag # found chain 1ko6A in template set Warning: unaligning (T0547)K27 (1ko6A)G762 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1ko6A)V764 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1ko6A)N768 because L (left) conformation "forbidden" or filtered. T0547 28 :K 1ko6A 763 :D T0547 30 :AII 1ko6A 765 :NLT T0547 34 :IV 1ko6A 769 :LN Number of specific fragments extracted= 3 number of extra gaps= 3 total=55257 # 1j2zA.27.185 read from T0547.t04.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)K28 (1j2zA)R187 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1j2zA)G192 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :K 1j2zA 186 :N T0547 29 :PAII 1j2zA 188 :AFIR T0547 34 :IV 1j2zA 193 :LN Number of specific fragments extracted= 3 number of extra gaps= 2 total=55260 # 1vykA.27.35 read from T0547.t04.many.frag # found chain 1vykA in training set Warning: unaligning (T0547)K27 (1vykA)D36 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1vykA)R37 because E (beta_S) conformation "forbidden" or filtered. T0547 29 :PAIIDIV 1vykA 38 :FYLQPLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=55261 # 1kqfA.27.116 read from T0547.t04.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)P29 (1kqfA)D119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1kqfA)K120 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :KK 1kqfA 117 :GS T0547 31 :IIDIV 1kqfA 121 :WQRIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=55263 # 1l9vA.27.192 read from T0547.t04.many.frag # found chain 1l9vA in template set T0547 27 :KKPAIIDIV 1l9vA 193 :EDKPISDVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=55264 # 2ew0A.27.141 read from T0547.t04.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)K27 (2ew0A)G142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2ew0A)W144 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :K 2ew0A 143 :D T0547 30 :AIIDIV 2ew0A 145 :LICDAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=55266 # 2b6cA.27.24 read from T0547.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0547)K27 (2b6cA)H22 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE in next template residue (2b6cA)V25 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)V25 Warning: unaligning (T0547)D33 (2b6cA)G28 because T (delta_L) conformation "forbidden" or filtered. T0547 28 :K 2b6cA 23 :Q T0547 31 :II 2b6cA 26 :FA T0547 34 :IV 2b6cA 29 :IP Number of specific fragments extracted= 3 number of extra gaps= 3 total=55269 # 1b25A.27.15 read from T0547.t04.many.frag # found chain 1b25A in template set Warning: unaligning (T0547)K27 (1b25A)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1b25A)V18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1b25A)K19 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :K 1b25A 17 :E T0547 31 :IIDIV 1b25A 20 :VQEYP Number of specific fragments extracted= 2 number of extra gaps= 2 total=55271 # 2a9iA.27.43 read from T0547.t04.many.frag # found chain 2a9iA in training set T0547 27 :KKPAIIDIV 2a9iA 44 :GDDRYNQFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=55272 # 1kg0C.27.35 read from T0547.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :KK 1kg0C 121 :KK T0547 30 :AIIDIV 1kg0C 124 :TWNGCF Number of specific fragments extracted= 2 number of extra gaps= 1 total=55274 # 1rmd.27.41 read from T0547.t04.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)P29 (1rmd)L44 because E (beta_S) conformation "forbidden" or filtered. T0547 27 :KK 1rmd 42 :KH T0547 30 :AIIDIV 1rmd 45 :FCRICI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55276 # 1ukkA.27.24 read from T0547.t04.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)K28 (1ukkA)Q26 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1ukkA)A27 because L (left) conformation "forbidden" or filtered. T0547 27 :K 1ukkA 25 :S T0547 30 :AIIDIV 1ukkA 28 :FQGPYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=55278 # 1d0dA.27.28 read from T0547.t04.many.frag # found chain 1d0dA in training set Warning: unaligning (T0547)K27 (1d0dA)G29 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1d0dA)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1d0dA)G32 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :K 1d0dA 30 :K T0547 31 :IIDIV 1d0dA 33 :CDSFW Number of specific fragments extracted= 2 number of extra gaps= 2 total=55280 # 1iomA.27.24 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)K27 (1iomA)G25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1iomA)L27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I32 (1iomA)Y30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1iomA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 28 :K 1iomA 26 :K T0547 30 :AI 1iomA 28 :YY T0547 34 :IV 1iomA 32 :IP Number of specific fragments extracted= 3 number of extra gaps= 3 total=55283 1uuhA expands to /projects/compbio/data/pdb/1uuh.pdb.gz 1uuhA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1uuhA.27.20 read from T0547.t04.many.frag # adding 1uuhA to template set # found chain 1uuhA in template set Warning: unaligning (T0547)K27 (1uuhA)G40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1uuhA)S43 because G (3-10) conformation "forbidden" or filtered. T0547 28 :KP 1uuhA 41 :RY T0547 31 :IIDIV 1uuhA 44 :ISRTE Number of specific fragments extracted= 2 number of extra gaps= 2 total=55285 # 2biwA.27.159 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)P29 (2biwA)L162 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (2biwA)G166 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :KK 2biwA 160 :SN T0547 30 :AII 2biwA 163 :ATI T0547 34 :IV 2biwA 167 :LD Number of specific fragments extracted= 3 number of extra gaps= 2 total=55288 # 1oewA.27.205 read from T0547.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)D33 (1oewA)S212 because P (beta_P) conformation "forbidden" or filtered. T0547 27 :KKPAII 1oewA 206 :GTFKST T0547 34 :IV 1oewA 213 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=55290 # 1yvrA.27.19 read from T0547.t04.many.frag # found chain 1yvrA in template set T0547 27 :KKPAIIDIV 1yvrA 20 :EGCYVWQVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=55291 # 1gesA.27.71 read from T0547.t04.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)P29 (1gesA)T74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1gesA)T75 because E (beta_S) conformation "forbidden" or filtered. T0547 27 :KK 1gesA 72 :FD T0547 31 :IIDIV 1gesA 76 :INKFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=55293 # 1oygA.27.177 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)P29 (1oygA)L206 because E (beta_S) conformation "forbidden" or filtered. T0547 27 :KK 1oygA 204 :SS T0547 30 :AIIDIV 1oygA 207 :NINGVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=55295 # 1eexG.27.56 read from T0547.t04.many.frag # found chain 1eexG in training set Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE at template residue (1eexG)T57 T0547 28 :KPAIIDIV 1eexG 58 :NKTLDDFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=55296 # 1my7A.27.41 read from T0547.t04.many.frag # found chain 1my7A in training set Warning: unaligning (T0547)K27 (1my7A)G232 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1my7A)E234 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I34 (1my7A)F239 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :K 1my7A 233 :W T0547 30 :AIID 1my7A 235 :ARGS T0547 35 :V 1my7A 240 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=55299 # 2c5qA.27.41 read from T0547.t04.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)P29 (2c5qA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :KK 2c5qA 42 :NS T0547 30 :AIIDIV 2c5qA 45 :IVGTAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=55301 # 1n35A.27.633 read from T0547.t04.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)P29 (1n35A)R636 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1n35A)A637 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :KK 1n35A 634 :GV T0547 31 :IIDIV 1n35A 638 :ARPIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=55303 # 2a8kA.27.78 read from T0547.t04.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)P29 (2a8kA)G81 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (2a8kA)Q85 because E (beta_S) conformation "forbidden" or filtered. T0547 27 :KK 2a8kA 79 :RT T0547 30 :AII 2a8kA 82 :EVT T0547 34 :IV 2a8kA 86 :IS Number of specific fragments extracted= 3 number of extra gaps= 2 total=55306 # 1j0dA.27.13 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)K28 (1j0dA)P15 because P (beta_P) conformation "forbidden" or filtered. T0547 27 :K 1j0dA 14 :G T0547 29 :PAIIDIV 1j0dA 16 :SPISNLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=55308 1oj5A expands to /projects/compbio/data/pdb/1oj5.pdb.gz 1oj5A:Skipped atom 42, because occupancy 0.400 <= existing 0.600 in 1oj5A Skipped atom 43, because occupancy 0.400 <= existing 0.600 in 1oj5A Skipped atom 44, because occupancy 0.400 <= existing 0.600 in 1oj5A Skipped atom 156, because occupancy 0.500 <= existing 0.500 in 1oj5A Skipped atom 157, because occupancy 0.500 <= existing 0.500 in 1oj5A Skipped atom 502, because occupancy 0.400 <= existing 0.600 in 1oj5A Skipped atom 503, because occupancy 0.400 <= existing 0.600 in 1oj5A Skipped atom 504, because occupancy 0.400 <= existing 0.600 in 1oj5A # 1oj5A.27.14 read from T0547.t04.many.frag # adding 1oj5A to template set # found chain 1oj5A in template set Warning: unaligning (T0547)P29 (1oj5A)G270 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I32 (1oj5A)I273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1oj5A)S274 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :KK 1oj5A 268 :TT T0547 30 :AI 1oj5A 271 :KI T0547 34 :IV 1oj5A 275 :ID Number of specific fragments extracted= 3 number of extra gaps= 2 total=55311 # 1nuyA.27.8 read from T0547.t04.many.frag # found chain 1nuyA in training set T0547 27 :KKPAIIDIV 1nuyA 1009 :NIVTLTRFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55312 # 1pii.27.60 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)I32 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1pii)D67 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)D67 T0547 27 :KKPAI 1pii 61 :KGVIR T0547 34 :IV 1pii 68 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=55314 # 1j2zA.28.186 read from T0547.t04.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)D33 (1j2zA)G192 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :KPAII 1j2zA 187 :RAFIR T0547 34 :IVK 1j2zA 193 :LNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=55316 # 1ko6A.28.86 read from T0547.t04.many.frag # found chain 1ko6A in template set Warning: unaligning (T0547)K28 (1ko6A)D763 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1ko6A)V764 because E (beta_S) conformation "forbidden" or filtered. T0547 30 :AIIDIVK 1ko6A 765 :NLTNLNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=55317 # 1m9xC.28.8 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)K28 (1m9xC)Q9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1m9xC)V11 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1m9xC)A14 because P (beta_P) conformation "forbidden" or filtered. T0547 29 :P 1m9xC 10 :M T0547 31 :II 1m9xC 12 :HQ T0547 34 :IVK 1m9xC 15 :ISP Number of specific fragments extracted= 3 number of extra gaps= 3 total=55320 # 1vykA.28.36 read from T0547.t04.many.frag # found chain 1vykA in training set Warning: unaligning (T0547)A30 (1vykA)Y39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1vykA)P42 because P (beta_P) conformation "forbidden" or filtered. T0547 28 :KP 1vykA 37 :RF T0547 31 :II 1vykA 40 :LQ T0547 34 :IVK 1vykA 43 :LPP Number of specific fragments extracted= 3 number of extra gaps= 2 total=55323 # 1kqfA.28.117 read from T0547.t04.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)P29 (1kqfA)D119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1kqfA)K120 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :K 1kqfA 118 :S T0547 31 :IIDIVK 1kqfA 121 :WQRISW Number of specific fragments extracted= 2 number of extra gaps= 1 total=55325 # 2ew0A.28.142 read from T0547.t04.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)P29 (2ew0A)W144 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :K 2ew0A 143 :D T0547 30 :AIIDIVK 2ew0A 145 :LICDADM Number of specific fragments extracted= 2 number of extra gaps= 1 total=55327 # 1iomA.28.25 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)P29 (1iomA)L27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I32 (1iomA)Y30 because L (left) conformation "forbidden" or filtered. T0547 28 :K 1iomA 26 :K T0547 30 :AI 1iomA 28 :YY T0547 33 :DIVK 1iomA 31 :GIPI Number of specific fragments extracted= 3 number of extra gaps= 2 total=55330 # 1b25A.28.16 read from T0547.t04.many.frag # found chain 1b25A in template set Warning: unaligning (T0547)P29 (1b25A)V18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1b25A)K19 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :K 1b25A 17 :E T0547 31 :IIDIVK 1b25A 20 :VQEYPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=55332 # 1l9vA.28.193 read from T0547.t04.many.frag # found chain 1l9vA in template set T0547 28 :KPAIIDIVK 1l9vA 194 :DKPISDVHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55333 # 1gesA.28.72 read from T0547.t04.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)P29 (1gesA)T74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1gesA)T75 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :K 1gesA 73 :D T0547 31 :IIDIVK 1gesA 76 :INKFNW Number of specific fragments extracted= 2 number of extra gaps= 1 total=55335 # 2b6cA.28.25 read from T0547.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE in next template residue (2b6cA)V25 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)V25 Warning: unaligning (T0547)D33 (2b6cA)G28 because T (delta_L) conformation "forbidden" or filtered. T0547 28 :K 2b6cA 23 :Q T0547 31 :II 2b6cA 26 :FA T0547 34 :IVK 2b6cA 29 :IPA Number of specific fragments extracted= 3 number of extra gaps= 2 total=55338 # 1yvrA.28.20 read from T0547.t04.many.frag # found chain 1yvrA in template set Warning: unaligning (T0547)A30 (1yvrA)Y23 because P (beta_P) conformation "forbidden" or filtered. T0547 28 :KP 1yvrA 21 :GC T0547 31 :IIDIVK 1yvrA 24 :VWQVSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=55340 # 2a9iA.28.44 read from T0547.t04.many.frag # found chain 2a9iA in training set Warning: unaligning (T0547)K28 (2a9iA)D45 because P (beta_P) conformation "forbidden" or filtered. T0547 29 :PAIIDIVK 2a9iA 46 :DRYNQFHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=55341 # 1u20A.28.14 read from T0547.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)D33 (1u20A)N20 because P (beta_P) conformation "forbidden" or filtered. T0547 28 :KPAII 1u20A 15 :KPRPR T0547 34 :IVK 1u20A 21 :ISR Number of specific fragments extracted= 2 number of extra gaps= 1 total=55343 # 1pii.28.61 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)I32 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1pii)D67 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)D67 T0547 28 :KPAI 1pii 62 :GVIR T0547 34 :IVK 1pii 68 :FDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=55345 # 1xg0C.28.15 read from T0547.t04.many.frag # found chain 1xg0C in training set Warning: unaligning (T0547)A30 (1xg0C)Y18 because D (zeta) conformation "forbidden" or filtered. T0547 28 :KP 1xg0C 16 :AA T0547 31 :IIDIVK 1xg0C 19 :VGGADL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55347 # 1eexG.28.57 read from T0547.t04.many.frag # found chain 1eexG in training set Warning: unaligning (T0547)K28 (1eexG)N58 because L (left) conformation "forbidden" or filtered. T0547 29 :PAIIDIVK 1eexG 59 :KTLDDFTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=55348 # 1ukkA.28.25 read from T0547.t04.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)P29 (1ukkA)A27 because L (left) conformation "forbidden" or filtered. T0547 28 :K 1ukkA 26 :Q T0547 30 :AIIDIVK 1ukkA 28 :FQGPYSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=55350 # 1uuhA.28.21 read from T0547.t04.many.frag # found chain 1uuhA in template set Warning: unaligning (T0547)K28 (1uuhA)R41 because Y (epsilon') conformation "forbidden" or filtered. T0547 29 :PAIIDIVK 1uuhA 42 :YSISRTEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=55351 # 1j0dA.28.14 read from T0547.t04.many.frag # found chain 1j0dA in template set T0547 28 :KPAIIDIVK 1j0dA 15 :PSPISNLNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=55352 # 1t56A.28.38 read from T0547.t04.many.frag # found chain 1t56A in training set Warning: unaligning (T0547)P29 (1t56A)R40 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1t56A)P41 because P (beta_P) conformation "forbidden" or filtered. T0547 28 :K 1t56A 39 :D T0547 31 :IIDIVK 1t56A 42 :LADISV Number of specific fragments extracted= 2 number of extra gaps= 1 total=55354 # 1nuyA.28.9 read from T0547.t04.many.frag # found chain 1nuyA in training set T0547 28 :KPAIIDIVK 1nuyA 1010 :IVTLTRFVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=55355 # 1kg0C.28.36 read from T0547.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0547)P29 (1kg0C)H123 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :K 1kg0C 122 :K T0547 30 :AIIDIVK 1kg0C 124 :TWNGCFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=55357 # 1oj5A.28.15 read from T0547.t04.many.frag # found chain 1oj5A in template set Warning: unaligning (T0547)P29 (1oj5A)G270 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1oj5A)S274 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :K 1oj5A 269 :T T0547 30 :AII 1oj5A 271 :KII T0547 34 :IVK 1oj5A 275 :IDT Number of specific fragments extracted= 3 number of extra gaps= 2 total=55360 # 1o4yA.28.204 read from T0547.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0547)K28 (1o4yA)G221 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1o4yA)V222 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1o4yA)K223 because P (beta_P) conformation "forbidden" or filtered. T0547 31 :IIDIVK 1o4yA 224 :VRTVTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=55361 # 1rmd.28.42 read from T0547.t04.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)P29 (1rmd)L44 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :K 1rmd 43 :H T0547 30 :AIIDIVK 1rmd 45 :FCRICIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55363 # 1n35A.28.634 read from T0547.t04.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)P29 (1n35A)R636 because D (zeta) conformation "forbidden" or filtered. T0547 28 :K 1n35A 635 :V T0547 30 :AIIDIVK 1n35A 637 :AARPISG Number of specific fragments extracted= 2 number of extra gaps= 1 total=55365 # 1tvxA.28.56 read from T0547.t04.many.frag # found chain 1tvxA in training set T0547 28 :KPAIIDIVK 1tvxA 72 :APRIKKIVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=55366 # 1uwkA.28.18 read from T0547.t04.many.frag # found chain 1uwkA in training set Warning: unaligning (T0547)D33 (1uwkA)S24 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :KPAII 1uwkA 19 :KLTAK T0547 34 :IVK 1uwkA 25 :WLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=55368 1u7kA expands to /projects/compbio/data/pdb/1u7k.pdb.gz 1u7kA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1u7kA.28.8 read from T0547.t04.many.frag # adding 1u7kA to template set # found chain 1u7kA in template set T0547 28 :KPAIIDIVK 1u7kA 9 :QLQYWPFSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=55369 # 1ko6A.29.87 read from T0547.t04.many.frag # found chain 1ko6A in template set Warning: unaligning (T0547)P29 (1ko6A)V764 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1ko6A)N768 because L (left) conformation "forbidden" or filtered. T0547 30 :AII 1ko6A 765 :NLT T0547 34 :IVKE 1ko6A 769 :LNLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=55371 # 1j2zA.29.187 read from T0547.t04.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)D33 (1j2zA)G192 because Y (epsilon') conformation "forbidden" or filtered. T0547 29 :PAII 1j2zA 188 :AFIR T0547 34 :IVKE 1j2zA 193 :LNRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=55373 # 1vykA.29.37 read from T0547.t04.many.frag # found chain 1vykA in training set T0547 29 :PAIIDIVKE 1vykA 38 :FYLQPLPPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=55374 # 1m9xC.29.9 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)A30 (1m9xC)V11 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1m9xC)A14 because P (beta_P) conformation "forbidden" or filtered. T0547 29 :P 1m9xC 10 :M T0547 31 :II 1m9xC 12 :HQ T0547 34 :IVKE 1m9xC 15 :ISPR Number of specific fragments extracted= 3 number of extra gaps= 2 total=55377 # 1kqfA.29.118 read from T0547.t04.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)P29 (1kqfA)D119 because G (3-10) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1kqfA 120 :KWQRISWE Number of specific fragments extracted= 1 number of extra gaps= 1 total=55378 # 1u20A.29.15 read from T0547.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)A30 (1u20A)R17 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1u20A)N20 because P (beta_P) conformation "forbidden" or filtered. T0547 29 :P 1u20A 16 :P T0547 31 :II 1u20A 18 :PR T0547 34 :IVKE 1u20A 21 :ISRE Number of specific fragments extracted= 3 number of extra gaps= 2 total=55381 # 1gesA.29.73 read from T0547.t04.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)P29 (1gesA)T74 because E (beta_S) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1gesA 75 :TINKFNWE Number of specific fragments extracted= 1 number of extra gaps= 1 total=55382 # 1iomA.29.26 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)P29 (1iomA)L27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I32 (1iomA)Y30 because L (left) conformation "forbidden" or filtered. T0547 30 :AI 1iomA 28 :YY T0547 33 :DIVKE 1iomA 31 :GIPIQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=55384 # 1b25A.29.17 read from T0547.t04.many.frag # found chain 1b25A in template set Warning: unaligning (T0547)P29 (1b25A)V18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1b25A)K19 because Y (epsilon') conformation "forbidden" or filtered. T0547 31 :IIDIVKE 1b25A 20 :VQEYPEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=55385 # 2ew0A.29.143 read from T0547.t04.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)P29 (2ew0A)W144 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I32 (2ew0A)C147 because Y (epsilon') conformation "forbidden" or filtered. T0547 30 :AI 2ew0A 145 :LI T0547 33 :DIVKE 2ew0A 148 :DADMD Number of specific fragments extracted= 2 number of extra gaps= 2 total=55387 # 1eexG.29.58 read from T0547.t04.many.frag # found chain 1eexG in training set T0547 29 :PAIIDIVKE 1eexG 59 :KTLDDFTLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=55388 # 1yvrA.29.21 read from T0547.t04.many.frag # found chain 1yvrA in template set T0547 29 :PAIIDIVKE 1yvrA 22 :CYVWQVSDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=55389 # 1xg0C.29.16 read from T0547.t04.many.frag # found chain 1xg0C in training set Warning: unaligning (T0547)A30 (1xg0C)Y18 because D (zeta) conformation "forbidden" or filtered. T0547 29 :P 1xg0C 17 :A T0547 31 :IIDIVKE 1xg0C 19 :VGGADLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=55391 # 2b6cA.29.26 read from T0547.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE in next template residue (2b6cA)V25 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)V25 Warning: unaligning (T0547)D33 (2b6cA)G28 because T (delta_L) conformation "forbidden" or filtered. T0547 31 :II 2b6cA 26 :FA T0547 34 :IVKE 2b6cA 29 :IPAP Number of specific fragments extracted= 2 number of extra gaps= 2 total=55393 # 1pii.29.62 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)I32 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1pii)D67 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)D67 T0547 29 :PAI 1pii 63 :VIR T0547 34 :IVKE 1pii 68 :FDPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=55395 # 1t56A.29.39 read from T0547.t04.many.frag # found chain 1t56A in training set Warning: unaligning (T0547)P29 (1t56A)R40 because Y (epsilon') conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1t56A 41 :PLADISVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=55396 # 1l9vA.29.194 read from T0547.t04.many.frag # found chain 1l9vA in template set T0547 29 :PAIIDIVKE 1l9vA 195 :KPISDVHVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=55397 # 2a9iA.29.45 read from T0547.t04.many.frag # found chain 2a9iA in training set T0547 29 :PAIIDIVKE 2a9iA 46 :DRYNQFHIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=55398 # 1ukkA.29.26 read from T0547.t04.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)P29 (1ukkA)A27 because L (left) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1ukkA 28 :FQGPYSYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=55399 # 1fjgI.29.25 read from T0547.t04.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)P29 (1fjgI)V26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1fjgI)T27 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)I32 (1fjgI)N29 because L (left) conformation "forbidden" or filtered. T0547 31 :I 1fjgI 28 :V T0547 33 :DIVKE 1fjgI 30 :GQDFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=55401 # 1o4yA.29.205 read from T0547.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0547)P29 (1o4yA)V222 because E (beta_S) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1o4yA 223 :KVRTVTRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=55402 # 1j0dA.29.15 read from T0547.t04.many.frag # found chain 1j0dA in template set T0547 29 :PAIIDIVKE 1j0dA 16 :SPISNLNRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55403 # 1vhuA.29.45 read from T0547.t04.many.frag # found chain 1vhuA in training set Warning: unaligning (T0547)P29 (1vhuA)L44 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I32 (1vhuA)G47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1vhuA)G48 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I34 (1vhuA)G49 because S (epsilon) conformation "forbidden" or filtered. T0547 30 :AI 1vhuA 45 :EH T0547 35 :VKE 1vhuA 50 :VAY Number of specific fragments extracted= 2 number of extra gaps= 2 total=55405 # 1ze3D.29.58 read from T0547.t04.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)P29 (1ze3D)G59 because T (delta_L) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1ze3D 60 :IVPCLTRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=55406 # 1wqjB.29.1 read from T0547.t04.many.frag # found chain 1wqjB in training set Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE at template residue (1wqjB)I4 T0547 30 :AIIDIVKE 1wqjB 5 :HCPPCSEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=55407 # 1nuyA.29.10 read from T0547.t04.many.frag # found chain 1nuyA in training set T0547 29 :PAIIDIVKE 1nuyA 1011 :VTLTRFVME Number of specific fragments extracted= 1 number of extra gaps= 0 total=55408 # 1n35A.29.635 read from T0547.t04.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)P29 (1n35A)R636 because D (zeta) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1n35A 637 :AARPISGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=55409 # 1rmd.29.43 read from T0547.t04.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)P29 (1rmd)L44 because E (beta_S) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1rmd 45 :FCRICILR Number of specific fragments extracted= 1 number of extra gaps= 1 total=55410 # 1vd6A.29.61 read from T0547.t04.many.frag # found chain 1vd6A in training set T0547 29 :PAIIDIVKE 1vd6A 62 :GPVFQVDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55411 # 1uuhA.29.22 read from T0547.t04.many.frag # found chain 1uuhA in template set T0547 29 :PAIIDIVKE 1uuhA 42 :YSISRTEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55412 # 1j2zA.30.188 read from T0547.t04.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)I32 (1j2zA)R191 because G (3-10) conformation "forbidden" or filtered. T0547 30 :AI 1j2zA 189 :FI T0547 33 :DIVKEL 1j2zA 192 :GLNRHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=55414 # 1ko6A.30.88 read from T0547.t04.many.frag # found chain 1ko6A in template set Warning: unaligning (T0547)D33 (1ko6A)N768 because L (left) conformation "forbidden" or filtered. T0547 30 :AII 1ko6A 765 :NLT T0547 34 :IVKEL 1ko6A 769 :LNLDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=55416 # 1kqfA.30.119 read from T0547.t04.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)A30 (1kqfA)K120 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1kqfA)R123 because P (beta_P) conformation "forbidden" or filtered. T0547 31 :II 1kqfA 121 :WQ T0547 34 :IVKEL 1kqfA 124 :ISWEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=55418 # 1m9xC.30.10 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)A30 (1m9xC)V11 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1m9xC)A14 because P (beta_P) conformation "forbidden" or filtered. T0547 31 :II 1m9xC 12 :HQ T0547 34 :IVKEL 1m9xC 15 :ISPRT Number of specific fragments extracted= 2 number of extra gaps= 2 total=55420 # 1vykA.30.38 read from T0547.t04.many.frag # found chain 1vykA in training set Warning: unaligning (T0547)D33 (1vykA)P42 because P (beta_P) conformation "forbidden" or filtered. T0547 30 :AII 1vykA 39 :YLQ T0547 34 :IVKEL 1vykA 43 :LPPTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=55422 # 1u20A.30.16 read from T0547.t04.many.frag # found chain 1u20A in template set T0547 30 :AIIDIVKEL 1u20A 17 :RPRNISREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=55423 # 1iomA.30.27 read from T0547.t04.many.frag # found chain 1iomA in training set T0547 30 :AIIDIVKEL 1iomA 28 :YYYGIPIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=55424 # 1xg0C.30.17 read from T0547.t04.many.frag # found chain 1xg0C in training set Warning: unaligning (T0547)A30 (1xg0C)Y18 because D (zeta) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1xg0C 19 :VGGADLQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=55425 # 1gesA.30.74 read from T0547.t04.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)A30 (1gesA)T75 because E (beta_S) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1gesA 76 :INKFNWET Number of specific fragments extracted= 1 number of extra gaps= 1 total=55426 # 1eexG.30.59 read from T0547.t04.many.frag # found chain 1eexG in training set T0547 30 :AIIDIVKEL 1eexG 60 :TLDDFTLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=55427 # 1b25A.30.18 read from T0547.t04.many.frag # found chain 1b25A in template set T0547 30 :AIIDIVKEL 1b25A 19 :KVQEYPEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55428 # 1pii.30.63 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)I32 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1pii)D67 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)D67 T0547 30 :AI 1pii 64 :IR T0547 34 :IVKEL 1pii 68 :FDPAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=55430 # 1fjgI.30.26 read from T0547.t04.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)A30 (1fjgI)T27 because D (zeta) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1fjgI 28 :VNGQDFNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=55431 # 1t56A.30.40 read from T0547.t04.many.frag # found chain 1t56A in training set Warning: unaligning (T0547)A30 (1t56A)P41 because P (beta_P) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1t56A 42 :LADISVDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=55432 # 1yvrA.30.22 read from T0547.t04.many.frag # found chain 1yvrA in template set Warning: unaligning (T0547)A30 (1yvrA)Y23 because P (beta_P) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1yvrA 24 :VWQVSDMN Number of specific fragments extracted= 1 number of extra gaps= 1 total=55433 # 2b6cA.30.27 read from T0547.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)V25 T0547 31 :IIDIVKEL 2b6cA 26 :FAGIPAPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=55434 # 2ew0A.30.144 read from T0547.t04.many.frag # found chain 2ew0A in training set T0547 30 :AIIDIVKEL 2ew0A 145 :LICDADMDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55435 # 1ukkA.30.27 read from T0547.t04.many.frag # found chain 1ukkA in training set T0547 30 :AIIDIVKEL 1ukkA 28 :FQGPYSYPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=55436 # 1wqjB.30.2 read from T0547.t04.many.frag # found chain 1wqjB in training set T0547 30 :AIIDIVKEL 1wqjB 5 :HCPPCSEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=55437 # 1nuyA.30.11 read from T0547.t04.many.frag # found chain 1nuyA in training set T0547 30 :AIIDIVKEL 1nuyA 1012 :TLTRFVMEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=55438 # 2a9iA.30.46 read from T0547.t04.many.frag # found chain 2a9iA in training set T0547 30 :AIIDIVKEL 2a9iA 47 :RYNQFHIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=55439 # 1vhuA.30.46 read from T0547.t04.many.frag # found chain 1vhuA in training set Warning: unaligning (T0547)D33 (1vhuA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 30 :AII 1vhuA 45 :EHG T0547 34 :IVKEL 1vhuA 49 :GVAYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=55441 # 1o4yA.30.206 read from T0547.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0547)I31 (1o4yA)V224 because G (3-10) conformation "forbidden" or filtered. T0547 30 :A 1o4yA 223 :K T0547 32 :IDIVKEL 1o4yA 225 :RTVTRAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=55443 # 1ze3D.30.59 read from T0547.t04.many.frag # found chain 1ze3D in template set T0547 30 :AIIDIVKEL 1ze3D 60 :IVPCLTRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=55444 # 1l9vA.30.195 read from T0547.t04.many.frag # found chain 1l9vA in template set T0547 30 :AIIDIVKEL 1l9vA 196 :PISDVHVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=55445 # 1r5iD.30.25 read from T0547.t04.many.frag # found chain 1r5iD in template set T0547 30 :AIIDIVKEL 1r5iD 23 :VFTNKELED Number of specific fragments extracted= 1 number of extra gaps= 0 total=55446 # 1izoA.30.64 read from T0547.t04.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)A30 (1izoA)Q65 because E (beta_S) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1izoA 66 :RQNALPKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=55447 # 1gpr.30.110 read from T0547.t04.many.frag # found chain 1gpr in template set T0547 30 :AIIDIVKEL 1gpr 111 :KLLEVDLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55448 # 1vd6A.30.62 read from T0547.t04.many.frag # found chain 1vd6A in training set T0547 30 :AIIDIVKEL 1vd6A 63 :PVFQVDYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=55449 # 1u7kA.30.10 read from T0547.t04.many.frag # found chain 1u7kA in template set Warning: unaligning (T0547)D33 (1u7kA)P14 because P (beta_P) conformation "forbidden" or filtered. T0547 30 :AII 1u7kA 11 :QYW T0547 34 :IVKEL 1u7kA 15 :FSSSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=55451 # 1j2zA.31.189 read from T0547.t04.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)D33 (1j2zA)G192 because Y (epsilon') conformation "forbidden" or filtered. T0547 31 :II 1j2zA 190 :IR T0547 34 :IVKELR 1j2zA 193 :LNRHRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=55453 # 1u20A.31.17 read from T0547.t04.many.frag # found chain 1u20A in template set T0547 31 :IIDIVKELR 1u20A 18 :PRNISREES Number of specific fragments extracted= 1 number of extra gaps= 0 total=55454 # 1eexG.31.60 read from T0547.t04.many.frag # found chain 1eexG in training set T0547 31 :IIDIVKELR 1eexG 61 :LDDFTLENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55455 # 1gesA.31.75 read from T0547.t04.many.frag # found chain 1gesA in template set T0547 31 :IIDIVKELR 1gesA 76 :INKFNWETL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55456 # 1b25A.31.19 read from T0547.t04.many.frag # found chain 1b25A in template set T0547 31 :IIDIVKELR 1b25A 20 :VQEYPEEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55457 # 1xg0C.31.18 read from T0547.t04.many.frag # found chain 1xg0C in training set Warning: unaligning (T0547)D33 (1xg0C)G21 because S (epsilon) conformation "forbidden" or filtered. T0547 31 :II 1xg0C 19 :VG T0547 34 :IVKELR 1xg0C 22 :ADLQAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55459 # 1vykA.31.39 read from T0547.t04.many.frag # found chain 1vykA in training set T0547 31 :IIDIVKELR 1vykA 40 :LQPLPPTEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55460 # 1iomA.31.28 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)I32 (1iomA)Y30 because L (left) conformation "forbidden" or filtered. T0547 31 :I 1iomA 29 :Y T0547 33 :DIVKELR 1iomA 31 :GIPIQEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55462 # 2b6cA.31.28 read from T0547.t04.many.frag # found chain 2b6cA in template set T0547 31 :IIDIVKELR 2b6cA 26 :FAGIPAPER Number of specific fragments extracted= 1 number of extra gaps= 0 total=55463 # 1t56A.31.41 read from T0547.t04.many.frag # found chain 1t56A in training set T0547 31 :IIDIVKELR 1t56A 42 :LADISVDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55464 # 1kqfA.31.120 read from T0547.t04.many.frag # found chain 1kqfA in training set T0547 31 :IIDIVKELR 1kqfA 121 :WQRISWEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55465 # 1pii.31.64 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)I32 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1pii)D67 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)D67 T0547 31 :I 1pii 65 :R T0547 34 :IVKELR 1pii 68 :FDPARI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55467 # 1m9xC.31.11 read from T0547.t04.many.frag # found chain 1m9xC in training set T0547 31 :IIDIVKELR 1m9xC 12 :HQAISPRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55468 # 2ew0A.31.145 read from T0547.t04.many.frag # found chain 2ew0A in training set T0547 31 :IIDIVKELR 2ew0A 146 :ICDADMDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=55469 # 1ukkA.31.28 read from T0547.t04.many.frag # found chain 1ukkA in training set T0547 31 :IIDIVKELR 1ukkA 29 :QGPYSYPSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=55470 # 1fjgI.31.27 read from T0547.t04.many.frag # found chain 1fjgI in template set T0547 31 :IIDIVKELR 1fjgI 28 :VNGQDFNEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=55471 # 1yvrA.31.23 read from T0547.t04.many.frag # found chain 1yvrA in template set Warning: unaligning (T0547)I31 (1yvrA)V24 because Y (epsilon') conformation "forbidden" or filtered. T0547 32 :IDIVKELR 1yvrA 25 :WQVSDMNR Number of specific fragments extracted= 1 number of extra gaps= 1 total=55472 # 1wqjB.31.3 read from T0547.t04.many.frag # found chain 1wqjB in training set T0547 31 :IIDIVKELR 1wqjB 6 :CPPCSEEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55473 # 1ko6A.31.89 read from T0547.t04.many.frag # found chain 1ko6A in template set Warning: unaligning (T0547)D33 (1ko6A)N768 because L (left) conformation "forbidden" or filtered. T0547 31 :II 1ko6A 766 :LT T0547 34 :IVKELR 1ko6A 769 :LNLDDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55475 # 1o4yA.31.207 read from T0547.t04.many.frag # found chain 1o4yA in training set T0547 31 :IIDIVKELR 1o4yA 224 :VRTVTRAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=55476 # 1g31A.31.75 read from T0547.t04.many.frag # found chain 1g31A in template set T0547 31 :IIDIVKELR 1g31A 76 :IRNVPHPFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55477 # 1ze3D.31.60 read from T0547.t04.many.frag # found chain 1ze3D in template set T0547 31 :IIDIVKELR 1ze3D 61 :VPCLTRAQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55478 # 1u7kA.31.11 read from T0547.t04.many.frag # found chain 1u7kA in template set Warning: unaligning (T0547)D33 (1u7kA)P14 because P (beta_P) conformation "forbidden" or filtered. T0547 31 :II 1u7kA 12 :YW T0547 34 :IVKELR 1u7kA 15 :FSSSDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55480 # 1r5iD.31.26 read from T0547.t04.many.frag # found chain 1r5iD in template set T0547 31 :IIDIVKELR 1r5iD 24 :FTNKELEDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=55481 # 1al3.31.180 read from T0547.t04.many.frag # found chain 1al3 in training set Warning: unaligning (T0547)I32 (1al3)G182 because T (delta_L) conformation "forbidden" or filtered. T0547 31 :I 1al3 181 :K T0547 33 :DIVKELR 1al3 183 :SVSIEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55483 # 1gpr.31.111 read from T0547.t04.many.frag # found chain 1gpr in template set T0547 31 :IIDIVKELR 1gpr 112 :LLEVDLDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55484 # 1n35A.31.637 read from T0547.t04.many.frag # found chain 1n35A in template set T0547 31 :IIDIVKELR 1n35A 638 :ARPISGMQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=55485 # 1sp3A.31.118 read from T0547.t04.many.frag # found chain 1sp3A in template set Warning: unaligning (T0547)D33 (1sp3A)K121 because T (delta_L) conformation "forbidden" or filtered. T0547 31 :II 1sp3A 119 :MA T0547 34 :IVKELR 1sp3A 122 :LDLAKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55487 # 1nuyA.31.12 read from T0547.t04.many.frag # found chain 1nuyA in training set T0547 31 :IIDIVKELR 1nuyA 1013 :LTRFVMEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=55488 # 1mbmA.31.148 read from T0547.t04.many.frag # found chain 1mbmA in template set T0547 31 :IIDIVKELR 1mbmA 155 :ADTVTLSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55489 # 1j2zA.32.190 read from T0547.t04.many.frag # found chain 1j2zA in template set T0547 32 :IDIVKELRD 1j2zA 191 :RGLNRHRMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=55490 # 1t56A.32.42 read from T0547.t04.many.frag # found chain 1t56A in training set T0547 32 :IDIVKELRD 1t56A 43 :ADISVDDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55491 # 1eexG.32.61 read from T0547.t04.many.frag # found chain 1eexG in training set T0547 32 :IDIVKELRD 1eexG 62 :DDFTLENVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55492 # 1u20A.32.18 read from T0547.t04.many.frag # found chain 1u20A in template set T0547 32 :IDIVKELRD 1u20A 19 :RNISREESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55493 # 1gesA.32.76 read from T0547.t04.many.frag # found chain 1gesA in template set T0547 32 :IDIVKELRD 1gesA 77 :NKFNWETLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=55494 # 1iomA.32.29 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)I32 (1iomA)Y30 because L (left) conformation "forbidden" or filtered. T0547 33 :DIVKELRD 1iomA 31 :GIPIQELA Number of specific fragments extracted= 1 number of extra gaps= 1 total=55495 # 1fjgI.32.28 read from T0547.t04.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)I32 (1fjgI)N29 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D33 (1fjgI)G30 because T (delta_L) conformation "forbidden" or filtered. T0547 34 :IVKELRD 1fjgI 31 :QDFNEYF Number of specific fragments extracted= 1 number of extra gaps= 1 total=55496 # 1vykA.32.40 read from T0547.t04.many.frag # found chain 1vykA in training set T0547 32 :IDIVKELRD 1vykA 41 :QPLPPTEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55497 # 1pii.32.65 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)I32 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1pii)D67 Warning: unaligning (T0547)D33 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)D67 T0547 34 :IVKELRD 1pii 68 :FDPARIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=55498 # 1b25A.32.20 read from T0547.t04.many.frag # found chain 1b25A in template set Warning: unaligning (T0547)D33 (1b25A)E22 because P (beta_P) conformation "forbidden" or filtered. T0547 32 :I 1b25A 21 :Q T0547 34 :IVKELRD 1b25A 23 :YPEEVAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=55500 # 1wqjB.32.4 read from T0547.t04.many.frag # found chain 1wqjB in training set T0547 32 :IDIVKELRD 1wqjB 7 :PPCSEEKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55501 # 1ukkA.32.29 read from T0547.t04.many.frag # found chain 1ukkA in training set T0547 32 :IDIVKELRD 1ukkA 30 :GPYSYPSRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=55502 # 1kqfA.32.121 read from T0547.t04.many.frag # found chain 1kqfA in training set T0547 32 :IDIVKELRD 1kqfA 122 :QRISWEEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=55503 # 1o4yA.32.208 read from T0547.t04.many.frag # found chain 1o4yA in training set T0547 32 :IDIVKELRD 1o4yA 225 :RTVTRAEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=55504 # 1xg0C.32.19 read from T0547.t04.many.frag # found chain 1xg0C in training set T0547 32 :IDIVKELRD 1xg0C 20 :GGADLQALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=55505 # 2b6cA.32.29 read from T0547.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0547)D33 (2b6cA)G28 because T (delta_L) conformation "forbidden" or filtered. T0547 32 :I 2b6cA 27 :A T0547 34 :IVKELRD 2b6cA 29 :IPAPERQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=55507 # 1mbmA.32.149 read from T0547.t04.many.frag # found chain 1mbmA in template set Warning: unaligning (T0547)D33 (1mbmA)T157 because E (beta_S) conformation "forbidden" or filtered. T0547 32 :I 1mbmA 156 :D T0547 34 :IVKELRD 1mbmA 158 :VTLSSLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=55509 # 1r5iD.32.27 read from T0547.t04.many.frag # found chain 1r5iD in template set T0547 32 :IDIVKELRD 1r5iD 25 :TNKELEDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=55510 # 1u7kA.32.12 read from T0547.t04.many.frag # found chain 1u7kA in template set T0547 32 :IDIVKELRD 1u7kA 13 :WPFSSSDLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=55511 # 1g31A.32.76 read from T0547.t04.many.frag # found chain 1g31A in template set Warning: unaligning (T0547)K36 (1g31A)H81 because P (beta_P) conformation "forbidden" or filtered. T0547 32 :IDIV 1g31A 77 :RNVP T0547 37 :ELRD 1g31A 82 :PFVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=55513 # 1j5sA.32.42 read from T0547.t04.many.frag # found chain 1j5sA in template set T0547 32 :IDIVKELRD 1j5sA 31 :NHLDAKDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55514 # 2ew0A.32.146 read from T0547.t04.many.frag # found chain 2ew0A in training set T0547 32 :IDIVKELRD 2ew0A 147 :CDADMDLIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=55515 # 1vliA.32.84 read from T0547.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)D33 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vliA)D74 T0547 34 :IVKELRD 1vliA 75 :VSIFSLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55516 # 1ze3D.32.61 read from T0547.t04.many.frag # found chain 1ze3D in template set T0547 32 :IDIVKELRD 1ze3D 62 :PCLTRAQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55517 # 1ymtA.32.113 read from T0547.t04.many.frag # found chain 1ymtA in training set T0547 32 :IDIVKELRD 1ymtA 330 :QEVELSTVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55518 # 2basA.32.23 read from T0547.t04.many.frag # found chain 2basA in template set Warning: unaligning (T0547)I34 because first residue in template chain is (2basA)L2 T0547 35 :VKELRD 2basA 3 :DPLDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55519 # 1m9xC.32.12 read from T0547.t04.many.frag # found chain 1m9xC in training set T0547 32 :IDIVKELRD 1m9xC 13 :QAISPRTLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=55520 # 1rwjA.32.46 read from T0547.t04.many.frag # found chain 1rwjA in training set T0547 32 :IDIVKELRD 1rwjA 47 :KRFTMADMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=55521 # 1sp3A.32.119 read from T0547.t04.many.frag # found chain 1sp3A in template set T0547 32 :IDIVKELRD 1sp3A 120 :AKLDLAKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55522 # 1rh6A.32.0 read from T0547.t04.many.frag # found chain 1rh6A in training set Warning: unaligning (T0547)I32 because first residue in template chain is (1rh6A)M1 T0547 33 :DIVKELRD 1rh6A 2 :YLTLQEWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=55523 # 1t56A.33.43 read from T0547.t04.many.frag # found chain 1t56A in training set T0547 33 :DIVKELRDD 1t56A 44 :DISVDDLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=55524 # 1eexG.33.62 read from T0547.t04.many.frag # found chain 1eexG in training set T0547 33 :DIVKELRDD 1eexG 63 :DFTLENVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=55525 # 1u20A.33.19 read from T0547.t04.many.frag # found chain 1u20A in template set T0547 33 :DIVKELRDD 1u20A 20 :NISREESLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=55526 # 1fjgI.33.29 read from T0547.t04.many.frag # found chain 1fjgI in template set T0547 33 :DIVKELRDD 1fjgI 30 :GQDFNEYFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=55527 # 1j2zA.33.191 read from T0547.t04.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)D33 (1j2zA)G192 because Y (epsilon') conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1j2zA 193 :LNRHRMRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=55528 # 1iomA.33.30 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)D33 (1iomA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1iomA 32 :IPIQELAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=55529 # 1ukkA.33.30 read from T0547.t04.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)D33 (1ukkA)P31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D41 (1ukkA)E39 because Y (epsilon') conformation "forbidden" or filtered. T0547 34 :IVKELRD 1ukkA 32 :YSYPSRF Number of specific fragments extracted= 1 number of extra gaps= 2 total=55530 # 1vliA.33.85 read from T0547.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)D33 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vliA)D74 T0547 34 :IVKELRDD 1vliA 75 :VSIFSLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=55531 # 2basA.33.24 read from T0547.t04.many.frag # found chain 2basA in template set Warning: unaligning (T0547)I34 because first residue in template chain is (2basA)L2 T0547 35 :VKELRDD 2basA 3 :DPLDILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=55532 # 1gesA.33.77 read from T0547.t04.many.frag # found chain 1gesA in template set T0547 33 :DIVKELRDD 1gesA 78 :KFNWETLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55533 # 1mbmA.33.150 read from T0547.t04.many.frag # found chain 1mbmA in template set T0547 33 :DIVKELRDD 1mbmA 157 :TVTLSSLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=55534 # 1wqjB.33.5 read from T0547.t04.many.frag # found chain 1wqjB in training set T0547 33 :DIVKELRDD 1wqjB 8 :PCSEEKLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=55535 # 1sp3A.33.120 read from T0547.t04.many.frag # found chain 1sp3A in template set Warning: unaligning (T0547)D33 (1sp3A)K121 because T (delta_L) conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1sp3A 122 :LDLAKIAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=55536 # 1r5iD.33.28 read from T0547.t04.many.frag # found chain 1r5iD in template set T0547 33 :DIVKELRDD 1r5iD 26 :NKELEDIYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=55537 # 1u7kA.33.13 read from T0547.t04.many.frag # found chain 1u7kA in template set T0547 33 :DIVKELRDD 1u7kA 14 :PFSSSDLYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=55538 # 1vykA.33.41 read from T0547.t04.many.frag # found chain 1vykA in training set Warning: unaligning (T0547)D33 (1vykA)P42 because P (beta_P) conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1vykA 43 :LPPTEAAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=55539 # 1al3.33.182 read from T0547.t04.many.frag # found chain 1al3 in training set T0547 33 :DIVKELRDD 1al3 183 :SVSIEELAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=55540 1evsA expands to /projects/compbio/data/pdb/1evs.pdb.gz 1evsA:# 1evsA.33.38 read from T0547.t04.many.frag # adding 1evsA to template set # found chain 1evsA in template set Warning: unaligning (T0547)D33 (1evsA)G39 because L (left) conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1evsA 40 :LDVPKLRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=55541 # 1rh6A.33.1 read from T0547.t04.many.frag # found chain 1rh6A in training set T0547 33 :DIVKELRDD 1rh6A 2 :YLTLQEWNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55542 # 1gpr.33.113 read from T0547.t04.many.frag # found chain 1gpr in template set T0547 33 :DIVKELRDD 1gpr 114 :EVDLDAVKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=55543 # 2ew0A.33.147 read from T0547.t04.many.frag # found chain 2ew0A in training set T0547 33 :DIVKELRDD 2ew0A 148 :DADMDLIFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=55544 # 2ccwA.33.95 read from T0547.t04.many.frag # found chain 2ccwA in training set T0547 33 :DIVKELRDD 2ccwA 96 :TFDVSKIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55545 # 1rwjA.33.47 read from T0547.t04.many.frag # found chain 1rwjA in training set T0547 33 :DIVKELRDD 1rwjA 48 :RFTMADMDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=55546 # 1o4yA.33.245 read from T0547.t04.many.frag # found chain 1o4yA in training set T0547 33 :DIVKELRDD 1o4yA 262 :AATQEELAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=55547 # 1g31A.33.77 read from T0547.t04.many.frag # found chain 1g31A in template set T0547 33 :DIVKELRDD 1g31A 78 :NVPHPFVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55548 # 1o4yA.33.209 read from T0547.t04.many.frag # found chain 1o4yA in training set T0547 33 :DIVKELRDD 1o4yA 226 :TVTRAEIDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=55549 # 1nuyA.33.14 read from T0547.t04.many.frag # found chain 1nuyA in training set T0547 33 :DIVKELRDD 1nuyA 1015 :RFVMEEGRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=55550 # 1oj5A.33.20 read from T0547.t04.many.frag # found chain 1oj5A in template set Warning: unaligning (T0547)D33 (1oj5A)S274 because Y (epsilon') conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1oj5A 275 :IDTSSLRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=55551 # 1xg0C.33.20 read from T0547.t04.many.frag # found chain 1xg0C in training set Warning: unaligning (T0547)D33 (1xg0C)G21 because S (epsilon) conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1xg0C 22 :ADLQALKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=55552 # 1j5sA.33.43 read from T0547.t04.many.frag # found chain 1j5sA in template set T0547 33 :DIVKELRDD 1j5sA 32 :HLDAKDIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=55553 # 1t56A.34.44 read from T0547.t04.many.frag # found chain 1t56A in training set T0547 34 :IVKELRDDG 1t56A 45 :ISVDDLAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=55554 # 1eexG.34.63 read from T0547.t04.many.frag # found chain 1eexG in training set T0547 34 :IVKELRDDG 1eexG 64 :FTLENVLSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=55555 # 1mbmA.34.151 read from T0547.t04.many.frag # found chain 1mbmA in template set T0547 34 :IVKELRDDG 1mbmA 158 :VTLSSLSKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=55556 # 1fjgI.34.30 read from T0547.t04.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)D41 (1fjgI)Q38 because P (beta_P) conformation "forbidden" or filtered. T0547 34 :IVKELRD 1fjgI 31 :QDFNEYF T0547 42 :G 1fjgI 39 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=55558 # 1vliA.34.86 read from T0547.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)G42 (1vliA)S83 because G (3-10) conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1vliA 75 :VSIFSLVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=55559 # 2basA.34.25 read from T0547.t04.many.frag # found chain 2basA in template set Warning: unaligning (T0547)I34 because first residue in template chain is (2basA)L2 T0547 35 :VKELRDDG 2basA 3 :DPLDILTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=55560 # 1iomA.34.31 read from T0547.t04.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)G42 (1iomA)K40 because G (3-10) conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1iomA 32 :IPIQELAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=55561 # 1ukkA.34.31 read from T0547.t04.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)D41 (1ukkA)E39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G42 (1ukkA)E40 because G (3-10) conformation "forbidden" or filtered. T0547 34 :IVKELRD 1ukkA 32 :YSYPSRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=55562 # 1evsA.34.39 read from T0547.t04.many.frag # found chain 1evsA in template set Warning: unaligning (T0547)G42 (1evsA)H48 because G (3-10) conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1evsA 40 :LDVPKLRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=55563 # 1u20A.34.20 read from T0547.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)G42 (1u20A)L29 because Y (epsilon') conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1u20A 21 :ISREESLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=55564 # 1r5iD.34.29 read from T0547.t04.many.frag # found chain 1r5iD in template set T0547 34 :IVKELRDDG 1r5iD 27 :KELEDIYNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55565 # 1nuyA.34.15 read from T0547.t04.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)G42 (1nuyA)A1024 because P (beta_P) conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1nuyA 1016 :FVMEEGRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=55566 # 1rh6A.34.2 read from T0547.t04.many.frag # found chain 1rh6A in training set T0547 34 :IVKELRDDG 1rh6A 3 :LTLQEWNAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=55567 # 1j2zA.34.192 read from T0547.t04.many.frag # found chain 1j2zA in template set T0547 34 :IVKELRDDG 1j2zA 193 :LNRHRMRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55568 # 1vquA.34.28 read from T0547.t04.many.frag # found chain 1vquA in template set T0547 34 :IVKELRDDG 1vquA 17 :LLLQQLIDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=55569 # 1sp3A.34.121 read from T0547.t04.many.frag # found chain 1sp3A in template set T0547 34 :IVKELRDDG 1sp3A 122 :LDLAKIAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=55570 # 2ccwA.34.96 read from T0547.t04.many.frag # found chain 2ccwA in training set Warning: unaligning (T0547)D40 (2ccwA)A103 because E (beta_S) conformation "forbidden" or filtered. T0547 34 :IVKELR 2ccwA 97 :FDVSKI T0547 41 :DG 2ccwA 104 :AG Number of specific fragments extracted= 2 number of extra gaps= 1 total=55572 # 1gesA.34.78 read from T0547.t04.many.frag # found chain 1gesA in template set T0547 34 :IVKELRDDG 1gesA 79 :FNWETLIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=55573 # 1o4yA.34.210 read from T0547.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0547)G42 (1o4yA)N235 because G (3-10) conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1o4yA 227 :VTRAEIDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=55574 # 1qw2A.34.46 read from T0547.t04.many.frag # found chain 1qw2A in training set Warning: unaligning (T0547)G42 (1qw2A)V68 because G (3-10) conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1qw2A 60 :LNMETSNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=55575 # 1gpr.34.114 read from T0547.t04.many.frag # found chain 1gpr in template set T0547 34 :IVKELRDDG 1gpr 115 :VDLDAVKPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=55576 # 1h0hB.34.138 read from T0547.t04.many.frag # found chain 1h0hB in training set T0547 34 :IVKELRDDG 1h0hB 139 :MCIDRITNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=55577 # 1g31A.34.78 read from T0547.t04.many.frag # found chain 1g31A in template set Warning: unaligning (T0547)K36 (1g31A)H81 because P (beta_P) conformation "forbidden" or filtered. T0547 34 :IV 1g31A 79 :VP T0547 37 :ELRDDG 1g31A 82 :PFVALG Number of specific fragments extracted= 2 number of extra gaps= 1 total=55579 # 2b1eA.34.100 read from T0547.t04.many.frag # found chain 2b1eA in template set T0547 34 :IVKELRDDG 2b1eA 160 :DPQINITKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=55580 2c5rA expands to /projects/compbio/data/pdb/2c5r.pdb.gz 2c5rA:# 2c5rA.34.25 read from T0547.t04.many.frag # adding 2c5rA to template set # found chain 2c5rA in template set Warning: unaligning (T0547)D41 (2c5rA)N95 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G42 (2c5rA)Q96 because G (3-10) conformation "forbidden" or filtered. T0547 34 :IVKELRD 2c5rA 88 :DIIEDLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=55581 1yqeA expands to /projects/compbio/data/pdb/1yqe.pdb.gz 1yqeA:# 1yqeA.34.59 read from T0547.t04.many.frag # adding 1yqeA to template set # found chain 1yqeA in template set Warning: unaligning (T0547)I34 (1yqeA)H56 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G42 (1yqeA)Y64 because G (3-10) conformation "forbidden" or filtered. T0547 35 :VKELRDD 1yqeA 57 :IDEKLAK Number of specific fragments extracted= 1 number of extra gaps= 2 total=55582 # 1wqjB.34.6 read from T0547.t04.many.frag # found chain 1wqjB in training set Warning: unaligning (T0547)G42 (1wqjB)C17 because P (beta_P) conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1wqjB 9 :CSEEKLAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=55583 # 1oj5A.34.21 read from T0547.t04.many.frag # found chain 1oj5A in template set Warning: unaligning (T0547)K36 (1oj5A)T277 because G (3-10) conformation "forbidden" or filtered. T0547 34 :IV 1oj5A 275 :ID T0547 37 :ELRDDG 1oj5A 278 :SSLRAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=55585 # 1o4yA.34.246 read from T0547.t04.many.frag # found chain 1o4yA in training set T0547 34 :IVKELRDDG 1o4yA 263 :ATQEELADD Number of specific fragments extracted= 1 number of extra gaps= 0 total=55586 # 1xg0C.34.21 read from T0547.t04.many.frag # found chain 1xg0C in training set Warning: unaligning (T0547)G42 (1xg0C)F30 because G (3-10) conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1xg0C 22 :ADLQALKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=55587 # 1fjgI.35.31 read from T0547.t04.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)D41 (1fjgI)Q38 because P (beta_P) conformation "forbidden" or filtered. T0547 35 :VKELRD 1fjgI 32 :DFNEYF T0547 42 :GY 1fjgI 39 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55589 # 1t56A.35.45 read from T0547.t04.many.frag # found chain 1t56A in training set T0547 35 :VKELRDDGY 1t56A 46 :SVDDLAKGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55590 # 1mbmA.35.152 read from T0547.t04.many.frag # found chain 1mbmA in template set Warning: unaligning (T0547)G42 (1mbmA)H166 because G (3-10) conformation "forbidden" or filtered. T0547 35 :VKELRDD 1mbmA 159 :TLSSLSK T0547 43 :Y 1mbmA 167 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=55592 # 1r5iD.35.30 read from T0547.t04.many.frag # found chain 1r5iD in template set T0547 35 :VKELRDDGY 1r5iD 28 :ELEDIYNLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=55593 # 1vliA.35.87 read from T0547.t04.many.frag # found chain 1vliA in template set T0547 35 :VKELRDDGY 1vliA 76 :SIFSLVQSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=55594 # 1vquA.35.29 read from T0547.t04.many.frag # found chain 1vquA in template set T0547 35 :VKELRDDGY 1vquA 18 :LLQQLIDGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=55595 # 1eexG.35.64 read from T0547.t04.many.frag # found chain 1eexG in training set T0547 35 :VKELRDDGY 1eexG 65 :TLENVLSNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=55596 # 1rh6A.35.3 read from T0547.t04.many.frag # found chain 1rh6A in training set T0547 35 :VKELRDDGY 1rh6A 4 :TLQEWNARQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=55597 # 2basA.35.26 read from T0547.t04.many.frag # found chain 2basA in template set T0547 35 :VKELRDDGY 2basA 3 :DPLDILTNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=55598 # 1nuyA.35.16 read from T0547.t04.many.frag # found chain 1nuyA in training set T0547 35 :VKELRDDGY 1nuyA 1017 :VMEEGRKAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=55599 # 1evsA.35.40 read from T0547.t04.many.frag # found chain 1evsA in template set Warning: unaligning (T0547)K36 (1evsA)V42 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G42 (1evsA)H48 because G (3-10) conformation "forbidden" or filtered. T0547 35 :V 1evsA 41 :D T0547 37 :ELRDD 1evsA 43 :PKLRE T0547 43 :Y 1evsA 49 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=55602 # 1qw2A.35.47 read from T0547.t04.many.frag # found chain 1qw2A in training set Warning: unaligning (T0547)G42 (1qw2A)V68 because G (3-10) conformation "forbidden" or filtered. T0547 35 :VKELRDD 1qw2A 61 :NMETSNK T0547 43 :Y 1qw2A 69 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=55604 # 1yqeA.35.60 read from T0547.t04.many.frag # found chain 1yqeA in template set T0547 35 :VKELRDDGY 1yqeA 57 :IDEKLAKYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=55605 # 1h0hB.35.139 read from T0547.t04.many.frag # found chain 1h0hB in training set Warning: unaligning (T0547)V35 (1h0hB)C140 because L (left) conformation "forbidden" or filtered. T0547 36 :KELRDDGY 1h0hB 141 :IDRITNGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=55606 # 1ukkA.35.32 read from T0547.t04.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)D41 (1ukkA)E39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G42 (1ukkA)E40 because G (3-10) conformation "forbidden" or filtered. T0547 35 :VKELRD 1ukkA 33 :SYPSRF T0547 43 :Y 1ukkA 41 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=55608 # 1ufaA.35.42 read from T0547.t04.many.frag # found chain 1ufaA in template set T0547 35 :VKELRDDGY 1ufaA 43 :LERLRAEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55609 1ov9A expands to /projects/compbio/data/pdb/1ov9.pdb.gz 1ov9A:# 1ov9A.35.11 read from T0547.t04.many.frag # adding 1ov9A to template set # found chain 1ov9A in template set T0547 35 :VKELRDDGY 1ov9A 12 :SLRAYAREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55610 # 2b1eA.35.101 read from T0547.t04.many.frag # found chain 2b1eA in template set T0547 35 :VKELRDDGY 2b1eA 161 :PQINITKKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=55611 # 1yrbA.35.68 read from T0547.t04.many.frag # found chain 1yrbA in training set Warning: unaligning (T0547)G42 (1yrbA)E62 because G (3-10) conformation "forbidden" or filtered. T0547 35 :VKELRDD 1yrbA 55 :TVEEIMR T0547 43 :Y 1yrbA 63 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=55613 # 1iomA.35.32 read from T0547.t04.many.frag # found chain 1iomA in training set T0547 35 :VKELRDDGY 1iomA 33 :PIQELAEKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=55614 # 1o7qA.35.39 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 35 :VKELRDDGY 1o7qA 119 :DNYYAKQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=55615 # 1sp3A.35.122 read from T0547.t04.many.frag # found chain 1sp3A in template set Warning: unaligning (T0547)G42 (1sp3A)N130 because G (3-10) conformation "forbidden" or filtered. T0547 35 :VKELRDD 1sp3A 123 :DLAKIAQ T0547 43 :Y 1sp3A 131 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=55617 # 1xg0C.35.22 read from T0547.t04.many.frag # found chain 1xg0C in training set T0547 35 :VKELRDDGY 1xg0C 23 :DLQALKKFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=55618 # 1vhyA.35.25 read from T0547.t04.many.frag # found chain 1vhyA in template set T0547 35 :VKELRDDGY 1vhyA 24 :AANHVARVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55619 # 1u20A.35.21 read from T0547.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)G42 (1u20A)L29 because Y (epsilon') conformation "forbidden" or filtered. T0547 35 :VKELRDD 1u20A 22 :SREESLQ T0547 43 :Y 1u20A 30 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=55621 # 1tz9A.35.25 read from T0547.t04.many.frag # found chain 1tz9A in template set Warning: unaligning (T0547)G42 (1tz9A)I23 because P (beta_P) conformation "forbidden" or filtered. T0547 35 :VKELRDD 1tz9A 16 :PLKHIRQ T0547 43 :Y 1tz9A 24 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=55623 # 1pbyC.35.32 read from T0547.t04.many.frag # found chain 1pbyC in training set Warning: unaligning (T0547)G42 (1pbyC)P40 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y43 (1pbyC)C41 because L (left) conformation "forbidden" or filtered. T0547 35 :VKELRDD 1pbyC 33 :DLYGCAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=55624 # 1t3tA.35.849 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 35 :VKELRDDGY 1t3tA 842 :ALAQVYRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55625 # 2ccwA.35.97 read from T0547.t04.many.frag # found chain 2ccwA in training set T0547 35 :VKELRDDGY 2ccwA 98 :DVSKIAAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=55626 # 1i6lA.35.24 read from T0547.t04.many.frag # found chain 1i6lA in training set T0547 35 :VKELRDDGY 1i6lA 25 :QFVELQHEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=55627 # 1ufaA.36.43 read from T0547.t04.many.frag # found chain 1ufaA in template set T0547 36 :KELRDDGYK 1ufaA 44 :ERLRAEGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=55628 # 1mbmA.36.153 read from T0547.t04.many.frag # found chain 1mbmA in template set T0547 36 :KELRDDGYK 1mbmA 160 :LSSLSKHFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=55629 # 1t56A.36.46 read from T0547.t04.many.frag # found chain 1t56A in training set Warning: unaligning (T0547)K44 (1t56A)G55 because L (left) conformation "forbidden" or filtered. T0547 36 :KELRDDGY 1t56A 47 :VDDLAKGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=55630 # 1rh6A.36.4 read from T0547.t04.many.frag # found chain 1rh6A in training set Warning: unaligning (T0547)G42 (1rh6A)R11 because G (3-10) conformation "forbidden" or filtered. T0547 36 :KELRDD 1rh6A 5 :LQEWNA T0547 43 :YK 1rh6A 12 :QR Number of specific fragments extracted= 2 number of extra gaps= 1 total=55632 # 1vquA.36.30 read from T0547.t04.many.frag # found chain 1vquA in template set T0547 36 :KELRDDGYK 1vquA 19 :LQQLIDGES Number of specific fragments extracted= 1 number of extra gaps= 0 total=55633 # 1r5iD.36.31 read from T0547.t04.many.frag # found chain 1r5iD in template set T0547 36 :KELRDDGYK 1r5iD 29 :LEDIYNLSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=55634 # 1yqeA.36.61 read from T0547.t04.many.frag # found chain 1yqeA in template set T0547 36 :KELRDDGYK 1yqeA 58 :DEKLAKYID Number of specific fragments extracted= 1 number of extra gaps= 0 total=55635 # 1h0hB.36.140 read from T0547.t04.many.frag # found chain 1h0hB in training set Warning: unaligning (T0547)K44 (1h0hB)R149 because P (beta_P) conformation "forbidden" or filtered. T0547 36 :KELRDDGY 1h0hB 141 :IDRITNGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=55636 # 1fjgI.36.32 read from T0547.t04.many.frag # found chain 1fjgI in template set T0547 36 :KELRDDGYK 1fjgI 33 :FNEYFQGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55637 # 2b1eA.36.102 read from T0547.t04.many.frag # found chain 2b1eA in template set T0547 36 :KELRDDGYK 2b1eA 162 :QINITKKMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=55638 # 1vliA.36.88 read from T0547.t04.many.frag # found chain 1vliA in template set T0547 36 :KELRDDGYK 1vliA 77 :IFSLVQSME Number of specific fragments extracted= 1 number of extra gaps= 0 total=55639 # 1w5tA.36.38 read from T0547.t04.many.frag # found chain 1w5tA in template set Warning: unaligning (T0547)Y43 (1w5tA)A46 because G (3-10) conformation "forbidden" or filtered. T0547 36 :KELRDDG 1w5tA 39 :LNRLLSG T0547 44 :K 1w5tA 47 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=55641 # 1yrbA.36.70 read from T0547.t04.many.frag # found chain 1yrbA in training set T0547 36 :KELRDDGYK 1yrbA 57 :EEIMREGYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=55642 # 1pzxA.36.50 read from T0547.t04.many.frag # found chain 1pzxA in template set T0547 36 :KELRDDGYK 1pzxA 49 :YDAMRQGHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=55643 # 2czsA.36.20 read from T0547.t04.many.frag # found chain 2czsA in training set T0547 36 :KELRDDGYK 2czsA 43 :YDAFAQGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=55644 # 1qw2A.36.48 read from T0547.t04.many.frag # found chain 1qw2A in training set T0547 36 :KELRDDGYK 1qw2A 62 :METSNKVGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=55645 # 1eexG.36.65 read from T0547.t04.many.frag # found chain 1eexG in training set T0547 36 :KELRDDGYK 1eexG 66 :LENVLSNKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55646 # 1gmxA.36.12 read from T0547.t04.many.frag # found chain 1gmxA in training set T0547 36 :KELRDDGYK 1gmxA 13 :HQKLQEKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55647 # 1ov9A.36.12 read from T0547.t04.many.frag # found chain 1ov9A in template set Warning: unaligning (T0547)K44 (1ov9A)T21 because P (beta_P) conformation "forbidden" or filtered. T0547 36 :KELRDDGY 1ov9A 13 :LRAYAREL Number of specific fragments extracted= 1 number of extra gaps= 1 total=55648 # 1nuyA.36.17 read from T0547.t04.many.frag # found chain 1nuyA in training set T0547 36 :KELRDDGYK 1nuyA 1018 :MEEGRKARG Number of specific fragments extracted= 1 number of extra gaps= 0 total=55649 # 1fyeA.36.23 read from T0547.t04.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)R39 (1fyeA)Q27 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D41 (1fyeA)N29 because L (left) conformation "forbidden" or filtered. T0547 36 :KEL 1fyeA 24 :IAN T0547 40 :D 1fyeA 28 :L T0547 42 :GYK 1fyeA 30 :GRR Number of specific fragments extracted= 3 number of extra gaps= 2 total=55652 # 1qmgA.36.46 read from T0547.t04.many.frag # found chain 1qmgA in training set T0547 36 :KELRDDGYK 1qmgA 118 :LPDAFKGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=55653 # 1xg0C.36.23 read from T0547.t04.many.frag # found chain 1xg0C in training set T0547 36 :KELRDDGYK 1xg0C 24 :LQALKKFIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=55654 # 1gu7A.36.127 read from T0547.t04.many.frag # found chain 1gu7A in training set T0547 36 :KELRDDGYK 1gu7A 150 :AQSKANGKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=55655 # 1yrbA.36.69 read from T0547.t04.many.frag # found chain 1yrbA in training set Warning: unaligning (T0547)Y43 (1yrbA)G63 because T (delta_L) conformation "forbidden" or filtered. T0547 36 :KELRDDG 1yrbA 56 :VEEIMRE T0547 44 :K 1yrbA 64 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=55657 # 2basA.36.27 read from T0547.t04.many.frag # found chain 2basA in template set T0547 36 :KELRDDGYK 2basA 4 :PLDILTNID Number of specific fragments extracted= 1 number of extra gaps= 0 total=55658 # 1vhyA.36.26 read from T0547.t04.many.frag # found chain 1vhyA in template set Warning: unaligning (T0547)K44 (1vhyA)R33 because L (left) conformation "forbidden" or filtered. T0547 36 :KELRDDGY 1vhyA 25 :ANHVARVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=55659 # 2ex0A.36.42 read from T0547.t04.many.frag # found chain 2ex0A in training set T0547 36 :KELRDDGYK 2ex0A 67 :PDNIITQYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=55660 # 1t3tA.36.850 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)D41 (1t3tA)R848 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (1t3tA)G851 because S (epsilon) conformation "forbidden" or filtered. T0547 36 :KELRD 1t3tA 843 :LAQVY T0547 42 :GY 1t3tA 849 :QL Number of specific fragments extracted= 2 number of extra gaps= 2 total=55662 # 1evsA.36.41 read from T0547.t04.many.frag # found chain 1evsA in template set Warning: unaligning (T0547)G42 (1evsA)H48 because G (3-10) conformation "forbidden" or filtered. T0547 36 :KELRDD 1evsA 42 :VPKLRE T0547 43 :YK 1evsA 49 :CR Number of specific fragments extracted= 2 number of extra gaps= 1 total=55664 # 1ufaA.37.44 read from T0547.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)G45 (1ufaA)A53 because D (zeta) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1ufaA 45 :RLRAEGVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=55665 # 1mbmA.37.154 read from T0547.t04.many.frag # found chain 1mbmA in template set Warning: unaligning (T0547)G42 (1mbmA)H166 because G (3-10) conformation "forbidden" or filtered. T0547 37 :ELRDD 1mbmA 161 :SSLSK T0547 43 :YKG 1mbmA 167 :FTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=55667 # 2ex0A.37.43 read from T0547.t04.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)G42 (2ex0A)Q73 because G (3-10) conformation "forbidden" or filtered. T0547 37 :ELRDD 2ex0A 68 :DNIIT T0547 43 :YKG 2ex0A 74 :YQN Number of specific fragments extracted= 2 number of extra gaps= 1 total=55669 # 1rh6A.37.5 read from T0547.t04.many.frag # found chain 1rh6A in training set Warning: unaligning (T0547)G45 (1rh6A)R14 because D (zeta) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1rh6A 6 :QEWNARQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=55670 # 1yqeA.37.62 read from T0547.t04.many.frag # found chain 1yqeA in template set Warning: unaligning (T0547)G42 (1yqeA)Y64 because G (3-10) conformation "forbidden" or filtered. T0547 37 :ELRDD 1yqeA 59 :EKLAK T0547 43 :YKG 1yqeA 65 :IDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=55672 # 2b1eA.37.103 read from T0547.t04.many.frag # found chain 2b1eA in template set T0547 37 :ELRDDGYKG 2b1eA 163 :INITKKMPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=55673 # 1gu7A.37.128 read from T0547.t04.many.frag # found chain 1gu7A in training set T0547 37 :ELRDDGYKG 1gu7A 151 :QSKANGKPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=55674 # 1xd3A.37.38 read from T0547.t04.many.frag # found chain 1xd3A in training set Warning: unaligning (T0547)K44 (1xd3A)P46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1xd3A)R47 because E (beta_S) conformation "forbidden" or filtered. T0547 37 :ELRDDGY 1xd3A 39 :PELLSMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=55675 # 1y44A.37.77 read from T0547.t04.many.frag # found chain 1y44A in template set T0547 37 :ELRDDGYKG 1y44A 78 :SRSFQGGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=55676 # 1vquA.37.31 read from T0547.t04.many.frag # found chain 1vquA in template set Warning: unaligning (T0547)K44 (1vquA)S27 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDDGY 1vquA 20 :QQLIDGE T0547 45 :G 1vquA 28 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=55678 # 1onrA.37.81 read from T0547.t04.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)G42 (1onrA)L88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1onrA)G91 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDD 1onrA 83 :LEILK T0547 43 :YK 1onrA 89 :VP Number of specific fragments extracted= 2 number of extra gaps= 2 total=55680 # 1t56A.37.47 read from T0547.t04.many.frag # found chain 1t56A in training set Warning: unaligning (T0547)K44 (1t56A)G55 because L (left) conformation "forbidden" or filtered. T0547 37 :ELRDDGY 1t56A 48 :DDLAKGA T0547 45 :G 1t56A 56 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=55682 # 1qw2A.37.49 read from T0547.t04.many.frag # found chain 1qw2A in training set Warning: unaligning (T0547)G42 (1qw2A)V68 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y43 (1qw2A)G69 because L (left) conformation "forbidden" or filtered. T0547 37 :ELRDD 1qw2A 63 :ETSNK T0547 44 :KG 1qw2A 70 :DI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55684 # 1o7qA.37.41 read from T0547.t04.many.frag # found chain 1o7qA in training set Warning: unaligning (T0547)K44 (1o7qA)T128 because E (beta_S) conformation "forbidden" or filtered. T0547 37 :ELRDDGY 1o7qA 121 :YYAKQKI T0547 45 :G 1o7qA 129 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=55686 # 1vliA.37.89 read from T0547.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)G42 (1vliA)S83 because G (3-10) conformation "forbidden" or filtered. T0547 37 :ELRDD 1vliA 78 :FSLVQ T0547 43 :YKG 1vliA 84 :MEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=55688 # 2cxaA.37.95 read from T0547.t04.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)G42 (2cxaA)R84 because G (3-10) conformation "forbidden" or filtered. T0547 37 :ELRDD 2cxaA 79 :KRFHK T0547 43 :YKG 2cxaA 85 :SPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=55690 # 1yrbA.37.70 read from T0547.t04.many.frag # found chain 1yrbA in training set Warning: unaligning (T0547)G42 (1yrbA)E62 because G (3-10) conformation "forbidden" or filtered. T0547 37 :ELRDD 1yrbA 57 :EEIMR T0547 43 :YKG 1yrbA 63 :GYG Number of specific fragments extracted= 2 number of extra gaps= 1 total=55692 # 1qmgA.37.47 read from T0547.t04.many.frag # found chain 1qmgA in training set T0547 37 :ELRDDGYKG 1qmgA 119 :PDAFKGIKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=55693 # 1fyeA.37.24 read from T0547.t04.many.frag # found chain 1fyeA in training set T0547 37 :ELRDDGYKG 1fyeA 25 :ANQLNGRRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=55694 # 1regX.37.52 read from T0547.t04.many.frag # found chain 1regX in template set T0547 37 :ELRDDGYKG 1regX 53 :MLRMDGRQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55695 # 1w5tA.37.39 read from T0547.t04.many.frag # found chain 1w5tA in template set T0547 37 :ELRDDGYKG 1w5tA 40 :NRLLSGAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55696 # 1pzxA.37.51 read from T0547.t04.many.frag # found chain 1pzxA in template set Warning: unaligning (T0547)G45 (1pzxA)V58 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1pzxA 50 :DAMRQGHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=55697 # 1yrbA.37.71 read from T0547.t04.many.frag # found chain 1yrbA in training set T0547 37 :ELRDDGYKG 1yrbA 58 :EIMREGYGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=55698 # 2czsA.37.21 read from T0547.t04.many.frag # found chain 2czsA in training set T0547 37 :ELRDDGYKG 2czsA 44 :DAFAQGAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=55699 # 1w8sA.37.9 read from T0547.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)G42 (1w8sA)R15 because G (3-10) conformation "forbidden" or filtered. T0547 37 :ELRDD 1w8sA 10 :RIFAR T0547 43 :YKG 1w8sA 16 :GKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=55701 # 2b9eA.37.26 read from T0547.t04.many.frag # found chain 2b9eA in training set T0547 37 :ELRDDGYKG 2b9eA 153 :YFKRQGFSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=55702 # 1r5iD.37.32 read from T0547.t04.many.frag # found chain 1r5iD in template set T0547 37 :ELRDDGYKG 1r5iD 30 :EDIYNLSNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=55703 # 1a8y.37.23 read from T0547.t04.many.frag # found chain 1a8y in template set T0547 37 :ELRDDGYKG 1a8y 24 :KNVFKKYEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55704 # 1h0hB.37.141 read from T0547.t04.many.frag # found chain 1h0hB in training set Warning: unaligning (T0547)G45 (1h0hB)P150 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1h0hB 142 :DRITNGLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=55705 # 1gmxA.37.13 read from T0547.t04.many.frag # found chain 1gmxA in training set T0547 37 :ELRDDGYKG 1gmxA 14 :QKLQEKEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55706 # 1ufaA.38.45 read from T0547.t04.many.frag # found chain 1ufaA in template set T0547 38 :LRDDGYKGP 1ufaA 46 :LRAEGVEAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=55707 # 1xd3A.38.39 read from T0547.t04.many.frag # found chain 1xd3A in training set Warning: unaligning (T0547)G45 (1xd3A)R47 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1xd3A 40 :ELLSMVP T0547 46 :P 1xd3A 48 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=55709 # 2ex0A.38.44 read from T0547.t04.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)P46 (2ex0A)I77 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 2ex0A 69 :NIITQYQN Number of specific fragments extracted= 1 number of extra gaps= 1 total=55710 # 1onrA.38.82 read from T0547.t04.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)G42 (1onrA)L88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1onrA)R92 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDD 1onrA 84 :EILK T0547 43 :YKG 1onrA 89 :VPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=55712 # 1mbmA.38.155 read from T0547.t04.many.frag # found chain 1mbmA in template set Warning: unaligning (T0547)G42 (1mbmA)H166 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (1mbmA)T168 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1mbmA)G169 because S (epsilon) conformation "forbidden" or filtered. T0547 38 :LRDD 1mbmA 162 :SLSK T0547 43 :Y 1mbmA 167 :F T0547 46 :P 1mbmA 170 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=55715 # 2b1eA.38.104 read from T0547.t04.many.frag # found chain 2b1eA in template set T0547 38 :LRDDGYKGP 2b1eA 164 :NITKKMPFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=55716 # 1a8y.38.24 read from T0547.t04.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)P46 (1a8y)L33 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1a8y 25 :NVFKKYEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=55717 # 1rh6A.38.6 read from T0547.t04.many.frag # found chain 1rh6A in training set Warning: unaligning (T0547)G42 (1rh6A)R11 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1rh6A)R14 because D (zeta) conformation "forbidden" or filtered. T0547 38 :LRDD 1rh6A 7 :EWNA T0547 43 :YK 1rh6A 12 :QR T0547 46 :P 1rh6A 15 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=55720 # 1yqeA.38.63 read from T0547.t04.many.frag # found chain 1yqeA in template set T0547 38 :LRDDGYKGP 1yqeA 60 :KLAKYIDFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=55721 # 1qmgA.38.48 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)D41 (1qmgA)K123 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1qmgA)I128 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRD 1qmgA 120 :DAF T0547 42 :GYKG 1qmgA 124 :GIKQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=55723 # 1gu7A.38.129 read from T0547.t04.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)P46 (1gu7A)G160 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1gu7A 152 :SKANGKPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=55724 # 1fyeA.38.25 read from T0547.t04.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)P46 (1fyeA)A34 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1fyeA 26 :NQLNGRRS Number of specific fragments extracted= 1 number of extra gaps= 1 total=55725 # 1y44A.38.78 read from T0547.t04.many.frag # found chain 1y44A in template set Warning: unaligning (T0547)G45 (1y44A)D86 because P (beta_P) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1y44A 79 :RSFQGGE T0547 46 :P 1y44A 87 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=55727 # 1o7qA.38.42 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 38 :LRDDGYKGP 1o7qA 122 :YAKQKITVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=55728 # 1qw2A.38.50 read from T0547.t04.many.frag # found chain 1qw2A in training set Warning: unaligning (T0547)Y43 (1qw2A)G69 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1qw2A)I71 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1qw2A)A72 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDG 1qw2A 64 :TSNKV T0547 44 :K 1qw2A 70 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=55730 # 1ytlA.38.29 read from T0547.t04.many.frag # found chain 1ytlA in training set T0547 38 :LRDDGYKGP 1ytlA 30 :NMIKKAKRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=55731 # 2cxaA.38.96 read from T0547.t04.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)G45 (2cxaA)Y87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2cxaA)R88 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 2cxaA 80 :RFHKRSP Number of specific fragments extracted= 1 number of extra gaps= 1 total=55732 # 1t7lA.38.167 read from T0547.t04.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)G45 (1t7lA)T143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1t7lA 136 :FKSKGIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=55733 # 1w2fA.38.64 read from T0547.t04.many.frag # found chain 1w2fA in training set Warning: unaligning (T0547)G42 (1w2fA)G254 because G (3-10) conformation "forbidden" or filtered. T0547 38 :LRDD 1w2fA 250 :DLLD T0547 43 :YKGP 1w2fA 255 :FDGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=55735 # 1vliA.38.90 read from T0547.t04.many.frag # found chain 1vliA in template set T0547 38 :LRDDGYKGP 1vliA 79 :SLVQSMEMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=55736 # 1i6lA.38.27 read from T0547.t04.many.frag # found chain 1i6lA in training set Warning: unaligning (T0547)P46 (1i6lA)Y36 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1i6lA 28 :ELQHEYNC Number of specific fragments extracted= 1 number of extra gaps= 1 total=55737 # 1vquA.38.32 read from T0547.t04.many.frag # found chain 1vquA in template set Warning: unaligning (T0547)G45 (1vquA)L28 because P (beta_P) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1vquA 21 :QLIDGES T0547 46 :P 1vquA 29 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=55739 # 1vcc.38.28 read from T0547.t04.many.frag # found chain 1vcc in training set T0547 38 :LRDDGYKGP 1vcc 29 :EVLQHVKIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=55740 # 2ew0A.38.110 read from T0547.t04.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)K44 (2ew0A)G117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2ew0A)G119 because S (epsilon) conformation "forbidden" or filtered. T0547 38 :LRDDGY 2ew0A 111 :AIAHNE T0547 45 :G 2ew0A 118 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=55742 # 1w5tA.38.40 read from T0547.t04.many.frag # found chain 1w5tA in template set Warning: unaligning (T0547)P46 (1w5tA)S49 because G (3-10) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1w5tA 41 :RLLSGAGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=55743 # 1pzxA.38.52 read from T0547.t04.many.frag # found chain 1pzxA in template set Warning: unaligning (T0547)G45 (1pzxA)V58 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1pzxA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1pzxA 51 :AMRQGHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=55744 # 1w8sA.38.10 read from T0547.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)G42 (1w8sA)R15 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y43 (1w8sA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1w8sA)S18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1w8sA)I19 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDD 1w8sA 11 :IFAR T0547 44 :K 1w8sA 17 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=55746 # 1r2mA.38.41 read from T0547.t04.many.frag # found chain 1r2mA in template set Warning: unaligning (T0547)Y43 (1r2mA)G47 because L (left) conformation "forbidden" or filtered. T0547 38 :LRDDG 1r2mA 42 :HCASK T0547 44 :KGP 1r2mA 48 :SKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=55748 # 2b9eA.38.27 read from T0547.t04.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)K44 (2b9eA)S160 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (2b9eA)Y161 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2b9eA)Q162 because G (3-10) conformation "forbidden" or filtered. T0547 38 :LRDDGY 2b9eA 154 :FKRQGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=55749 # 1wddA.38.142 read from T0547.t04.many.frag # found chain 1wddA in training set T0547 38 :LRDDGYKGP 1wddA 143 :TYSKTFQGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=55750 # 1ufaA.39.46 read from T0547.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)G45 (1ufaA)A53 because D (zeta) conformation "forbidden" or filtered. T0547 39 :RDDGYK 1ufaA 47 :RAEGVE T0547 46 :PL 1ufaA 54 :PF Number of specific fragments extracted= 2 number of extra gaps= 1 total=55752 # 1ytlA.39.30 read from T0547.t04.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)G45 (1ytlA)R37 because D (zeta) conformation "forbidden" or filtered. T0547 39 :RDDGYK 1ytlA 31 :MIKKAK T0547 46 :PL 1ytlA 38 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55754 # 1a8y.39.25 read from T0547.t04.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)P46 (1a8y)L33 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1a8y 26 :VFKKYEV T0547 47 :L 1a8y 34 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=55756 # 1t7lA.39.168 read from T0547.t04.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1t7lA 137 :KSKGIET T0547 47 :L 1t7lA 145 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=55758 # 1qw2A.39.51 read from T0547.t04.many.frag # found chain 1qw2A in training set Warning: unaligning (T0547)G42 (1qw2A)V68 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y43 (1qw2A)G69 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1qw2A)I71 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1qw2A)A72 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDD 1qw2A 65 :SNK T0547 44 :K 1qw2A 70 :D T0547 47 :L 1qw2A 73 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=55761 # 2b1eA.39.105 read from T0547.t04.many.frag # found chain 2b1eA in template set T0547 39 :RDDGYKGPL 2b1eA 165 :ITKKMPFPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=55762 # 1xd3A.39.40 read from T0547.t04.many.frag # found chain 1xd3A in training set T0547 39 :RDDGYKGPL 1xd3A 41 :LLSMVPRPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55763 # 1o7qA.39.43 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 39 :RDDGYKGPL 1o7qA 123 :AKQKITVGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55764 # 1qwnA.39.117 read from T0547.t04.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G42 (1qwnA)N121 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1qwnA)M124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1qwnA)K125 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDD 1qwnA 118 :LHD T0547 43 :YK 1qwnA 122 :PE T0547 47 :L 1qwnA 126 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=55767 # 1w2fA.39.65 read from T0547.t04.many.frag # found chain 1w2fA in training set Warning: unaligning (T0547)G42 (1w2fA)G254 because G (3-10) conformation "forbidden" or filtered. T0547 39 :RDD 1w2fA 251 :LLD T0547 43 :YKGPL 1w2fA 255 :FDGPC Number of specific fragments extracted= 2 number of extra gaps= 1 total=55769 # 1gmxA.39.15 read from T0547.t04.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)K44 (1gmxA)A21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1gmxA)V22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGY 1gmxA 16 :LQEKE T0547 47 :L 1gmxA 24 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=55771 # 1onrA.39.83 read from T0547.t04.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)G42 (1onrA)L88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1onrA)R92 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDD 1onrA 85 :ILK T0547 43 :YKG 1onrA 89 :VPG T0547 47 :L 1onrA 93 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=55774 # 1yqeA.39.64 read from T0547.t04.many.frag # found chain 1yqeA in template set Warning: unaligning (T0547)G42 (1yqeA)Y64 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (1yqeA)D66 because P (beta_P) conformation "forbidden" or filtered. T0547 39 :RDD 1yqeA 61 :LAK T0547 43 :Y 1yqeA 65 :I T0547 45 :GPL 1yqeA 67 :FEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=55777 # 1i6lA.39.28 read from T0547.t04.many.frag # found chain 1i6lA in training set Warning: unaligning (T0547)P46 (1i6lA)Y36 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1i6lA 29 :LQHEYNC T0547 47 :L 1i6lA 37 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=55779 # 2cxaA.39.97 read from T0547.t04.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)G42 (2cxaA)R84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2cxaA)R88 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDD 2cxaA 81 :FHK T0547 43 :YKG 2cxaA 85 :SPY T0547 47 :L 2cxaA 89 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=55782 # 1gu7A.39.130 read from T0547.t04.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)P46 (1gu7A)G160 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1gu7A 153 :KANGKPN T0547 47 :L 1gu7A 161 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=55784 # 2ex0A.39.45 read from T0547.t04.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)G42 (2ex0A)Q73 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2ex0A)I77 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDD 2ex0A 70 :IIT T0547 43 :YKG 2ex0A 74 :YQN T0547 47 :L 2ex0A 78 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=55787 # 2etjA.39.18 read from T0547.t04.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)G42 (2etjA)E10 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2etjA)V14 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDD 2etjA 7 :YKK T0547 43 :YKG 2etjA 11 :FGI T0547 47 :L 2etjA 15 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=55790 # 1y44A.39.79 read from T0547.t04.many.frag # found chain 1y44A in template set T0547 39 :RDDGYKGPL 1y44A 80 :SFQGGEDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55791 # 1fyeA.39.26 read from T0547.t04.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)D41 (1fyeA)N29 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1fyeA)A34 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RD 1fyeA 27 :QL T0547 42 :GYKG 1fyeA 30 :GRRS T0547 47 :L 1fyeA 35 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=55794 # 1knwA.39.19 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 39 :RDDGYKGPL 1knwA 20 :LPAEFGCPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55795 # 1lqtA.39.27 read from T0547.t04.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)R39 (1lqtA)T28 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1lqtA)A35 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1lqtA 29 :TEDLDM T0547 47 :L 1lqtA 36 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=55797 # 1mbmA.39.156 read from T0547.t04.many.frag # found chain 1mbmA in template set T0547 39 :RDDGYKGPL 1mbmA 163 :LSKHFTGPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55798 # 1qmgA.39.49 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)D41 (1qmgA)K123 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1qmgA)Q127 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1qmgA)I128 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RD 1qmgA 121 :AF T0547 42 :GYK 1qmgA 124 :GIK T0547 47 :L 1qmgA 129 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=55801 # 1pzxA.39.53 read from T0547.t04.many.frag # found chain 1pzxA in template set Warning: unaligning (T0547)G45 (1pzxA)V58 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1pzxA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYK 1pzxA 52 :MRQGHT T0547 47 :L 1pzxA 60 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=55803 # 1w8sA.39.11 read from T0547.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)G42 (1w8sA)R15 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1w8sA)S18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1w8sA)I19 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDD 1w8sA 12 :FAR T0547 43 :YK 1w8sA 16 :GK T0547 47 :L 1w8sA 20 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=55806 # 1qwyA.39.45 read from T0547.t04.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)G42 (1qwyA)N74 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y43 (1qwyA)K75 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1qwyA)Y77 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1qwyA)S78 because G (3-10) conformation "forbidden" or filtered. T0547 39 :RDD 1qwyA 71 :MFD T0547 44 :K 1qwyA 76 :E T0547 47 :L 1qwyA 79 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=55809 # 1r2mA.39.42 read from T0547.t04.many.frag # found chain 1r2mA in template set Warning: unaligning (T0547)G42 (1r2mA)K46 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y43 (1r2mA)G47 because L (left) conformation "forbidden" or filtered. T0547 39 :RDD 1r2mA 43 :CAS T0547 44 :KGPL 1r2mA 48 :SKPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55811 1sddA expands to /projects/compbio/data/pdb/1sdd.pdb.gz 1sddA:# 1sddA.39.153 read from T0547.t04.many.frag # adding 1sddA to template set # found chain 1sddA in template set Warning: unaligning (T0547)K44 (1sddA)I159 because Y (epsilon') conformation "forbidden" or filtered. T0547 39 :RDDGY 1sddA 154 :FNSGL T0547 45 :GPL 1sddA 160 :GPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55813 # 1rh6A.39.7 read from T0547.t04.many.frag # found chain 1rh6A in training set Warning: unaligning (T0547)G45 (1rh6A)R14 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (1rh6A)R16 because Y (epsilon') conformation "forbidden" or filtered. T0547 39 :RDDGYK 1rh6A 8 :WNARQR T0547 46 :P 1rh6A 15 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=55815 # 1ufaA.40.47 read from T0547.t04.many.frag # found chain 1ufaA in template set T0547 40 :DDGYKGPLL 1ufaA 48 :AEGVEAPFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=55816 # 1ytlA.40.31 read from T0547.t04.many.frag # found chain 1ytlA in training set T0547 40 :DDGYKGPLL 1ytlA 32 :IKKAKRPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55817 # 1t7lA.40.169 read from T0547.t04.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1t7lA 138 :SKGIET T0547 47 :LL 1t7lA 145 :PW Number of specific fragments extracted= 2 number of extra gaps= 1 total=55819 # 1w2fA.40.66 read from T0547.t04.many.frag # found chain 1w2fA in training set T0547 40 :DDGYKGPLL 1w2fA 252 :LDGFDGPCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55820 # 1a8y.40.26 read from T0547.t04.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)P46 (1a8y)L33 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1a8y 27 :FKKYEV T0547 47 :LL 1a8y 34 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55822 # 1knwA.40.20 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K44 (1knwA)G25 because S (epsilon) conformation "forbidden" or filtered. T0547 40 :DDGY 1knwA 21 :PAEF T0547 45 :GPLL 1knwA 26 :CPVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=55824 # 1fyeA.40.27 read from T0547.t04.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)D41 (1fyeA)N29 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1fyeA)A34 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :D 1fyeA 28 :L T0547 42 :GYKG 1fyeA 30 :GRRS T0547 47 :LL 1fyeA 35 :VF Number of specific fragments extracted= 3 number of extra gaps= 2 total=55827 # 1uc2A.40.18 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)D40 (1uc2A)D19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1uc2A)V24 because Y (epsilon') conformation "forbidden" or filtered. T0547 41 :DGYK 1uc2A 20 :KRMR T0547 46 :PLL 1uc2A 25 :PGR Number of specific fragments extracted= 2 number of extra gaps= 2 total=55829 # 1gmxA.40.16 read from T0547.t04.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1gmxA 17 :QEKEAV T0547 47 :LL 1gmxA 24 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=55831 # 2etjA.40.19 read from T0547.t04.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)G42 (2etjA)E10 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (2etjA)G12 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2etjA)V14 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DD 2etjA 8 :KK T0547 43 :Y 2etjA 11 :F T0547 45 :G 2etjA 13 :I T0547 47 :LL 2etjA 15 :AG Number of specific fragments extracted= 4 number of extra gaps= 3 total=55835 # 1qw2A.40.52 read from T0547.t04.many.frag # found chain 1qw2A in training set Warning: unaligning (T0547)G45 (1qw2A)I71 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1qw2A)A72 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYK 1qw2A 66 :NKVGD T0547 47 :LL 1qw2A 73 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=55837 # 1w8sA.40.12 read from T0547.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)Y43 (1w8sA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1w8sA)I19 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDG 1w8sA 13 :ARR T0547 44 :KG 1w8sA 17 :KS T0547 47 :LL 1w8sA 20 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=55840 # 1sddA.40.154 read from T0547.t04.many.frag # found chain 1sddA in template set Warning: unaligning (T0547)K44 (1sddA)I159 because Y (epsilon') conformation "forbidden" or filtered. T0547 40 :DDGY 1sddA 155 :NSGL T0547 45 :GPLL 1sddA 160 :GPLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55842 2ahmE expands to /projects/compbio/data/pdb/2ahm.pdb.gz 2ahmE:# 2ahmE.40.181 read from T0547.t04.many.frag # adding 2ahmE to template set # found chain 2ahmE in template set Warning: unaligning (T0547)K44 (2ahmE)A186 because N (gamma') conformation "forbidden" or filtered. T0547 40 :DDGY 2ahmE 182 :SPNL T0547 45 :GPLL 2ahmE 187 :WPLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55844 # 1i6lA.40.29 read from T0547.t04.many.frag # found chain 1i6lA in training set Warning: unaligning (T0547)G45 (1i6lA)C35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1i6lA)Y36 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYK 1i6lA 30 :QHEYN T0547 47 :LL 1i6lA 37 :FC Number of specific fragments extracted= 2 number of extra gaps= 1 total=55846 # 1u5hA.40.2 read from T0547.t04.many.frag # found chain 1u5hA in template set T0547 40 :DDGYKGPLL 1u5hA 3 :LRAAGPGWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=55847 # 1wu7A.40.92 read from T0547.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)D40 (1wu7A)R93 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKGPLL 1wu7A 94 :KDLQRPLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=55848 # 1o7qA.40.44 read from T0547.t04.many.frag # found chain 1o7qA in training set Warning: unaligning (T0547)G45 (1o7qA)V129 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYK 1o7qA 124 :KQKIT T0547 46 :PLL 1o7qA 130 :GLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=55850 # 1qmgA.40.50 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)P46 (1qmgA)I128 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1qmgA 122 :FKGIKQ T0547 47 :LL 1qmgA 129 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=55852 # 1qwnA.40.118 read from T0547.t04.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G42 (1qwnA)N121 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1qwnA)K125 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DD 1qwnA 119 :HD T0547 43 :YKG 1qwnA 122 :PEM T0547 47 :LL 1qwnA 126 :FI Number of specific fragments extracted= 3 number of extra gaps= 2 total=55855 # 1pii.40.42 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1pii)R47 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)R47 T0547 40 :DDG 1pii 43 :LQG T0547 45 :GPLL 1pii 48 :TAFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55857 # 1lqtA.40.28 read from T0547.t04.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)D40 (1lqtA)T29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D41 (1lqtA)E30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1lqtA)A35 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :GYKG 1lqtA 31 :DLDM T0547 47 :LL 1lqtA 36 :VD Number of specific fragments extracted= 2 number of extra gaps= 2 total=55859 # 1y44A.40.80 read from T0547.t04.many.frag # found chain 1y44A in template set T0547 40 :DDGYKGPLL 1y44A 81 :FQGGEDELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=55860 # 1onrA.40.84 read from T0547.t04.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)G42 (1onrA)L88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1onrA)R92 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DD 1onrA 86 :LK T0547 43 :YKG 1onrA 89 :VPG T0547 47 :LL 1onrA 93 :IS Number of specific fragments extracted= 3 number of extra gaps= 2 total=55863 # 1pii.40.76 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)P46 (1pii)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1pii 77 :YKHYAS T0547 47 :LL 1pii 84 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=55865 # 1xd3A.40.41 read from T0547.t04.many.frag # found chain 1xd3A in training set Warning: unaligning (T0547)K44 (1xd3A)P46 because P (beta_P) conformation "forbidden" or filtered. T0547 40 :DDGY 1xd3A 42 :LSMV T0547 45 :GPLL 1xd3A 47 :RPVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=55867 # 2ex0A.40.46 read from T0547.t04.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)G42 (2ex0A)Q73 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2ex0A)I77 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DD 2ex0A 71 :IT T0547 43 :YKG 2ex0A 74 :YQN T0547 47 :LL 2ex0A 78 :HF Number of specific fragments extracted= 3 number of extra gaps= 2 total=55870 # 1qmgA.40.118 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)P46 (1qmgA)V196 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1qmgA 190 :ISGSDL T0547 47 :LL 1qmgA 197 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55872 # 1vqoN.40.26 read from T0547.t04.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)G45 (1vqoN)K31 because P (beta_P) conformation "forbidden" or filtered. T0547 40 :DDGYK 1vqoN 26 :LLKSG T0547 46 :PLL 1vqoN 32 :PRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55874 # 1of8A.40.62 read from T0547.t04.many.frag # found chain 1of8A in training set Warning: unaligning (T0547)D41 (1of8A)G64 because T (delta_L) conformation "forbidden" or filtered. T0547 40 :D 1of8A 63 :T T0547 42 :GYKGPLL 1of8A 65 :KDDRVLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=55876 # 1ufaA.41.48 read from T0547.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)L47 (1ufaA)F55 because Y (epsilon') conformation "forbidden" or filtered. T0547 41 :DGYKGP 1ufaA 49 :EGVEAP T0547 48 :LL 1ufaA 56 :TL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55878 # 1ytlA.41.32 read from T0547.t04.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)G45 (1ytlA)R37 because D (zeta) conformation "forbidden" or filtered. T0547 41 :DGYK 1ytlA 33 :KKAK T0547 46 :PLLL 1ytlA 38 :PLLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55880 # 1t7lA.41.170 read from T0547.t04.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 41 :DGYKG 1t7lA 139 :KGIET T0547 47 :LLL 1t7lA 145 :PWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=55882 # 1w2fA.41.67 read from T0547.t04.many.frag # found chain 1w2fA in training set Warning: unaligning (T0547)G42 (1w2fA)G254 because G (3-10) conformation "forbidden" or filtered. T0547 41 :D 1w2fA 253 :D T0547 43 :YKGPLLL 1w2fA 255 :FDGPCVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55884 # 1knwA.41.21 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K44 (1knwA)G25 because S (epsilon) conformation "forbidden" or filtered. T0547 41 :DGY 1knwA 22 :AEF T0547 45 :GPLLL 1knwA 26 :CPVWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=55886 # 1uc2A.41.19 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)G45 (1uc2A)V24 because Y (epsilon') conformation "forbidden" or filtered. T0547 41 :DGYK 1uc2A 20 :KRMR T0547 46 :PLLL 1uc2A 25 :PGRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=55888 # 1a8y.41.27 read from T0547.t04.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)G45 (1a8y)V32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1a8y)L33 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYK 1a8y 28 :KKYE T0547 47 :LLL 1a8y 34 :ALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55890 # 1w8sA.41.13 read from T0547.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P46 (1w8sA)I19 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1w8sA 14 :RRGKS T0547 47 :LLL 1w8sA 20 :ILA Number of specific fragments extracted= 2 number of extra gaps= 1 total=55892 # 1sddA.41.155 read from T0547.t04.many.frag # found chain 1sddA in template set Warning: unaligning (T0547)K44 (1sddA)I159 because Y (epsilon') conformation "forbidden" or filtered. T0547 41 :DGY 1sddA 156 :SGL T0547 45 :GPLLL 1sddA 160 :GPLLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55894 # 1vqoN.41.27 read from T0547.t04.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)G45 (1vqoN)K31 because P (beta_P) conformation "forbidden" or filtered. T0547 41 :DGYK 1vqoN 27 :LKSG T0547 46 :PLLL 1vqoN 32 :PRLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=55896 # 2ahmE.41.182 read from T0547.t04.many.frag # found chain 2ahmE in template set Warning: unaligning (T0547)P46 (2ahmE)P188 because C (cis) conformation "forbidden" or filtered. T0547 41 :DGYKG 2ahmE 183 :PNLAW T0547 47 :LLL 2ahmE 189 :LIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=55898 # 1dj7B.41.46 read from T0547.t04.many.frag # found chain 1dj7B in template set Warning: unaligning (T0547)G42 (1dj7B)S48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1dj7B)L51 because D (zeta) conformation "forbidden" or filtered. T0547 41 :D 1dj7B 47 :I T0547 43 :YK 1dj7B 49 :AN T0547 46 :PLLL 1dj7B 52 :PVLV Number of specific fragments extracted= 3 number of extra gaps= 2 total=55901 # 1fyeA.41.28 read from T0547.t04.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)G45 (1fyeA)S33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1fyeA)A34 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYK 1fyeA 29 :NGRR T0547 47 :LLL 1fyeA 35 :VFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55903 # 2etjA.41.20 read from T0547.t04.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)G42 (2etjA)E10 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2etjA)V14 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :D 2etjA 9 :K T0547 43 :YKG 2etjA 11 :FGI T0547 47 :LLL 2etjA 15 :AGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=55906 # 1epuA.41.20 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)G45 (1epuA)W25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1epuA)K26 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYK 1epuA 21 :KNAE T0547 47 :LLL 1epuA 27 :VLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55908 # 1pii.41.77 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)P46 (1pii)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1pii 78 :KHYAS T0547 47 :LLL 1pii 84 :ISV Number of specific fragments extracted= 2 number of extra gaps= 1 total=55910 # 1llfA.41.109 read from T0547.t04.many.frag # found chain 1llfA in training set Warning: unaligning (T0547)K44 (1llfA)N113 because L (left) conformation "forbidden" or filtered. T0547 41 :DGY 1llfA 110 :AGA T0547 45 :GPLLL 1llfA 114 :LPVML Number of specific fragments extracted= 2 number of extra gaps= 1 total=55912 # 1h2wA.41.461 read from T0547.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)Y43 (1h2wA)G464 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1h2wA)H466 because P (beta_P) conformation "forbidden" or filtered. T0547 41 :DG 1h2wA 462 :LD T0547 44 :K 1h2wA 465 :S T0547 46 :PLLL 1h2wA 467 :PAFL Number of specific fragments extracted= 3 number of extra gaps= 2 total=55915 # 1qwnA.41.119 read from T0547.t04.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G42 (1qwnA)N121 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1qwnA)M124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1qwnA)K125 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :D 1qwnA 120 :D T0547 43 :YK 1qwnA 122 :PE T0547 47 :LLL 1qwnA 126 :FIW Number of specific fragments extracted= 3 number of extra gaps= 2 total=55918 # 1u5hA.41.3 read from T0547.t04.many.frag # found chain 1u5hA in template set Warning: unaligning (T0547)K44 (1u5hA)G7 because P (beta_P) conformation "forbidden" or filtered. T0547 41 :DGY 1u5hA 4 :RAA T0547 45 :GPLLL 1u5hA 8 :PGWLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=55920 # 1xauA.41.71 read from T0547.t04.many.frag # found chain 1xauA in training set T0547 41 :DGYKGPLLL 1xauA 71 :ENRSVPVFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=55921 # 1pii.41.43 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)Y43 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1pii)R47 Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)R47 Warning: unaligning (T0547)G45 (1pii)T48 because P (beta_P) conformation "forbidden" or filtered. T0547 41 :DG 1pii 44 :QG T0547 46 :PLLL 1pii 49 :AFIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55923 # 1gmxA.41.17 read from T0547.t04.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1gmxA 18 :EKEAV T0547 47 :LLL 1gmxA 24 :VDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55925 # 1qmgA.41.119 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)P46 (1qmgA)V196 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1qmgA 191 :SGSDL T0547 47 :LLL 1qmgA 197 :LLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55927 # 1qmgA.41.51 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)P46 (1qmgA)I128 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1qmgA 123 :KGIKQ T0547 47 :LLL 1qmgA 129 :GVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55929 # 1p35A.41.35 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)Y43 (1p35A)L39 because L (left) conformation "forbidden" or filtered. T0547 41 :DG 1p35A 37 :TQ T0547 44 :KGPLLL 1p35A 40 :TKPVLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=55931 # 1wu7A.41.93 read from T0547.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G42 (1wu7A)D95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (1wu7A)Q97 because P (beta_P) conformation "forbidden" or filtered. T0547 41 :D 1wu7A 94 :K T0547 43 :Y 1wu7A 96 :L T0547 45 :GPLLL 1wu7A 98 :RPLRW Number of specific fragments extracted= 3 number of extra gaps= 2 total=55934 # 1y44A.41.81 read from T0547.t04.many.frag # found chain 1y44A in template set Warning: unaligning (T0547)K44 (1y44A)E85 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1y44A)D86 because P (beta_P) conformation "forbidden" or filtered. T0547 41 :DGY 1y44A 82 :QGG T0547 46 :PLLL 1y44A 87 :ELTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=55936 # 2bjvA.41.25 read from T0547.t04.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)G45 (2bjvA)K30 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYK 2bjvA 26 :APLD T0547 46 :PLLL 2bjvA 31 :PVLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55938 # 1i6lA.41.30 read from T0547.t04.many.frag # found chain 1i6lA in training set Warning: unaligning (T0547)G42 (1i6lA)E32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (1i6lA)N34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1i6lA)C35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1i6lA)Y36 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :D 1i6lA 31 :H T0547 43 :Y 1i6lA 33 :Y T0547 47 :LLL 1i6lA 37 :FCI Number of specific fragments extracted= 3 number of extra gaps= 2 total=55941 # 1ytlA.42.33 read from T0547.t04.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)G45 (1ytlA)R37 because D (zeta) conformation "forbidden" or filtered. T0547 42 :GYK 1ytlA 34 :KAK T0547 46 :PLLLR 1ytlA 38 :PLLIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=55943 # 1knwA.42.22 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K44 (1knwA)G25 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1knwA)C26 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :GY 1knwA 23 :EF T0547 46 :PLLLR 1knwA 27 :PVWVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=55945 # 1ufaA.42.49 read from T0547.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)L47 (1ufaA)F55 because Y (epsilon') conformation "forbidden" or filtered. T0547 42 :GYKGP 1ufaA 50 :GVEAP T0547 48 :LLR 1ufaA 56 :TLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=55947 # 1uc2A.42.20 read from T0547.t04.many.frag # found chain 1uc2A in template set T0547 42 :GYKGPLLLR 1uc2A 21 :RMRVPGRVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=55948 # 1w2fA.42.68 read from T0547.t04.many.frag # found chain 1w2fA in training set Warning: unaligning (T0547)G42 (1w2fA)G254 because G (3-10) conformation "forbidden" or filtered. T0547 43 :YKGPLLLR 1w2fA 255 :FDGPCVLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=55949 # 1h2wA.42.462 read from T0547.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)G42 (1h2wA)D463 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y43 (1h2wA)G464 because T (delta_L) conformation "forbidden" or filtered. T0547 44 :KGPLLLR 1h2wA 465 :SHPAFLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=55950 # 1t7lA.42.171 read from T0547.t04.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1t7lA)I148 because P (beta_P) conformation "forbidden" or filtered. T0547 42 :GYKG 1t7lA 140 :GIET T0547 47 :LLL 1t7lA 145 :PWV Number of specific fragments extracted= 2 number of extra gaps= 2 total=55952 # 1vqoN.42.28 read from T0547.t04.many.frag # found chain 1vqoN in template set T0547 42 :GYKGPLLLR 1vqoN 28 :KSGKPRLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55953 # 1sddA.42.156 read from T0547.t04.many.frag # found chain 1sddA in template set Warning: unaligning (T0547)K44 (1sddA)I159 because Y (epsilon') conformation "forbidden" or filtered. T0547 42 :GY 1sddA 157 :GL T0547 45 :GPLLLR 1sddA 160 :GPLLIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=55955 # 1epuA.42.21 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)G42 (1epuA)N22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1epuA)K26 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YKG 1epuA 23 :AEW T0547 47 :LLLR 1epuA 27 :VLIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=55957 # 1dj7B.42.47 read from T0547.t04.many.frag # found chain 1dj7B in template set T0547 42 :GYKGPLLLR 1dj7B 48 :SANLPVLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=55958 # 7odcA.42.34 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)K44 (7odcA)K37 because L (left) conformation "forbidden" or filtered. T0547 45 :GPLLLR 7odcA 38 :DAFYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55959 # 2ahmE.42.183 read from T0547.t04.many.frag # found chain 2ahmE in template set Warning: unaligning (T0547)G42 (2ahmE)N184 because G (3-10) conformation "forbidden" or filtered. T0547 43 :YKGPLLLR 2ahmE 185 :LAWPLIVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=55960 # 1w8sA.42.14 read from T0547.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)G42 (1w8sA)R15 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y43 (1w8sA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1w8sA)S18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1w8sA)I19 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :K 1w8sA 17 :K T0547 47 :LLLR 1w8sA 20 :ILAY Number of specific fragments extracted= 2 number of extra gaps= 2 total=55962 # 1p35A.42.36 read from T0547.t04.many.frag # found chain 1p35A in template set T0547 42 :GYKGPLLLR 1p35A 38 :QLTKPVLMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=55963 # 1xauA.42.72 read from T0547.t04.many.frag # found chain 1xauA in training set Warning: unaligning (T0547)G42 (1xauA)N72 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1xauA)V75 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YK 1xauA 73 :RS T0547 46 :PLLLR 1xauA 76 :PVFVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=55965 # 2bjvA.42.26 read from T0547.t04.many.frag # found chain 2bjvA in training set T0547 42 :GYKGPLLLR 2bjvA 27 :PLDKPVLII Number of specific fragments extracted= 1 number of extra gaps= 0 total=55966 # 1llfA.42.110 read from T0547.t04.many.frag # found chain 1llfA in training set T0547 42 :GYKGPLLLR 1llfA 111 :GANLPVMLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=55967 # 1wu7A.42.94 read from T0547.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G42 (1wu7A)D95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (1wu7A)Q97 because P (beta_P) conformation "forbidden" or filtered. T0547 43 :Y 1wu7A 96 :L T0547 45 :GPLLLR 1wu7A 98 :RPLRWY Number of specific fragments extracted= 2 number of extra gaps= 2 total=55969 # 1pii.42.78 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)P46 (1pii)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :GYKG 1pii 79 :HYAS T0547 47 :LLLR 1pii 84 :ISVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=55971 # 1on3A.42.127 read from T0547.t04.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)K44 (1on3A)G131 because L (left) conformation "forbidden" or filtered. T0547 42 :GY 1on3A 129 :LT T0547 45 :GPLLLR 1on3A 132 :TPFLFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=55973 # 1a8y.42.28 read from T0547.t04.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)P46 (1a8y)L33 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :GYKG 1a8y 29 :KYEV T0547 47 :LLLR 1a8y 34 :ALLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=55975 # 1ogdA.42.18 read from T0547.t04.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)G45 (1ogdA)D22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1ogdA)K23 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :GYK 1ogdA 19 :GHT T0547 47 :LLLR 1ogdA 24 :IVIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=55977 # 1y44A.42.82 read from T0547.t04.many.frag # found chain 1y44A in template set T0547 42 :GYKGPLLLR 1y44A 83 :GGEDELTVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=55978 # 1q2lA.42.495 read from T0547.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)G42 (1q2lA)K519 because P (beta_P) conformation "forbidden" or filtered. T0547 43 :YKGPLLLR 1q2lA 520 :YDHPELIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=55979 # 1tif.42.50 read from T0547.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0547)G45 (1tif)P54 because C (cis) conformation "forbidden" or filtered. T0547 42 :GYK 1tif 51 :NAK T0547 46 :PLLLR 1tif 55 :PVCRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=55981 # 1sg6A.42.34 read from T0547.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)G42 (1sg6A)S35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1sg6A)Y39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1sg6A)T43 because Y (epsilon') conformation "forbidden" or filtered. T0547 43 :YKG 1sg6A 36 :STT T0547 47 :LLL 1sg6A 40 :VLV Number of specific fragments extracted= 2 number of extra gaps= 3 total=55983 # 1k3sA.42.73 read from T0547.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0547)K44 (1k3sA)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1k3sA)L82 because Y (epsilon') conformation "forbidden" or filtered. T0547 42 :GY 1k3sA 74 :AD T0547 45 :G 1k3sA 77 :T T0547 47 :LLL 1k3sA 79 :LVA Number of specific fragments extracted= 3 number of extra gaps= 3 total=55986 # 2d0oA.42.125 read from T0547.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0547)G42 (2d0oA)P126 because P (beta_P) conformation "forbidden" or filtered. T0547 43 :YKGPLLLR 2d0oA 127 :ADAPYILV Number of specific fragments extracted= 1 number of extra gaps= 1 total=55987 # 1senA.42.43 read from T0547.t04.many.frag # found chain 1senA in training set Warning: unaligning (T0547)Y43 (1senA)S53 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1senA)L55 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :G 1senA 52 :A T0547 44 :K 1senA 54 :G T0547 46 :PLLLR 1senA 56 :PLMVI Number of specific fragments extracted= 3 number of extra gaps= 2 total=55990 # 1knwA.43.23 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K44 (1knwA)G25 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1knwA)P27 because C (cis) conformation "forbidden" or filtered. T0547 43 :Y 1knwA 24 :F T0547 45 :G 1knwA 26 :C T0547 47 :LLLRF 1knwA 28 :VWVYD Number of specific fragments extracted= 3 number of extra gaps= 2 total=55993 # 1uc2A.43.21 read from T0547.t04.many.frag # found chain 1uc2A in template set T0547 43 :YKGPLLLRF 1uc2A 22 :MRVPGRVYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=55994 # 7odcA.43.35 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L47 (7odcA)F40 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :KGP 7odcA 37 :KDA T0547 48 :LLRF 7odcA 41 :YVAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=55996 # 1ytlA.43.34 read from T0547.t04.many.frag # found chain 1ytlA in training set T0547 43 :YKGPLLLRF 1ytlA 35 :AKRPLLIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=55997 # 1ufaA.43.50 read from T0547.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)G45 (1ufaA)A53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (1ufaA)F55 because Y (epsilon') conformation "forbidden" or filtered. T0547 43 :YK 1ufaA 51 :VE T0547 46 :P 1ufaA 54 :P T0547 48 :LLRF 1ufaA 56 :TLGI Number of specific fragments extracted= 3 number of extra gaps= 2 total=56000 # 1h2wA.43.463 read from T0547.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)Y43 (1h2wA)G464 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1h2wA)H466 because P (beta_P) conformation "forbidden" or filtered. T0547 44 :K 1h2wA 465 :S T0547 46 :PLLLRF 1h2wA 467 :PAFLYG Number of specific fragments extracted= 2 number of extra gaps= 2 total=56002 # 1epuA.43.22 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)G45 (1epuA)W25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1epuA)K26 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YK 1epuA 23 :AE T0547 47 :LLLRF 1epuA 27 :VLIVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=56004 # 1sddA.43.157 read from T0547.t04.many.frag # found chain 1sddA in template set T0547 43 :YKGPLLLRF 1sddA 158 :LIGPLLICK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56005 # 1dj7B.43.48 read from T0547.t04.many.frag # found chain 1dj7B in template set Warning: unaligning (T0547)K44 (1dj7B)N50 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1dj7B)L51 because D (zeta) conformation "forbidden" or filtered. T0547 43 :Y 1dj7B 49 :A T0547 46 :PLLLRF 1dj7B 52 :PVLVKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=56007 # 1vqoN.43.29 read from T0547.t04.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)K44 (1vqoN)G30 because T (delta_L) conformation "forbidden" or filtered. T0547 43 :Y 1vqoN 29 :S T0547 45 :GPLLLRF 1vqoN 31 :KPRLVAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=56009 # 2ahmE.43.184 read from T0547.t04.many.frag # found chain 2ahmE in template set Warning: unaligning (T0547)G45 (2ahmE)W187 because P (beta_P) conformation "forbidden" or filtered. T0547 43 :YK 2ahmE 185 :LA T0547 46 :PLLLRF 2ahmE 188 :PLIVTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=56011 # 1w8sA.43.15 read from T0547.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P46 (1w8sA)I19 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YKG 1w8sA 16 :GKS T0547 47 :LLLRF 1w8sA 20 :ILAYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=56013 # 2bjvA.43.27 read from T0547.t04.many.frag # found chain 2bjvA in training set T0547 43 :YKGPLLLRF 2bjvA 28 :LDKPVLIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56014 # 1t7lA.43.172 read from T0547.t04.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 43 :YKG 1t7lA 141 :IET T0547 47 :LLLRF 1t7lA 145 :PWVIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=56016 # 1wu7A.43.95 read from T0547.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)K44 (1wu7A)Q97 because P (beta_P) conformation "forbidden" or filtered. T0547 43 :Y 1wu7A 96 :L T0547 45 :GPLLLRF 1wu7A 98 :RPLRWYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=56018 # 1yt8A.43.61 read from T0547.t04.many.frag # found chain 1yt8A in template set T0547 43 :YKGPLLLRF 1yt8A 62 :RDTPITVYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56019 # 1on3A.43.128 read from T0547.t04.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)K44 (1on3A)G131 because L (left) conformation "forbidden" or filtered. T0547 43 :Y 1on3A 130 :T T0547 45 :GPLLLRF 1on3A 132 :TPFLFFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=56021 # 1w2fA.43.69 read from T0547.t04.many.frag # found chain 1w2fA in training set T0547 43 :YKGPLLLRF 1w2fA 255 :FDGPCVLDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=56022 # 1y44A.43.83 read from T0547.t04.many.frag # found chain 1y44A in template set Warning: unaligning (T0547)G45 (1y44A)D86 because P (beta_P) conformation "forbidden" or filtered. T0547 43 :YK 1y44A 84 :GE T0547 46 :PLLLRF 1y44A 87 :ELTVYG Number of specific fragments extracted= 2 number of extra gaps= 1 total=56024 # 1p35A.43.37 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)Y43 (1p35A)L39 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F51 (1p35A)F47 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :KGPLLLR 1p35A 40 :TKPVLMM Number of specific fragments extracted= 1 number of extra gaps= 2 total=56025 # 1tif.43.52 read from T0547.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0547)K44 (1tif)P54 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1tif)M60 because Y (epsilon') conformation "forbidden" or filtered. T0547 43 :Y 1tif 53 :K T0547 45 :GPLLL 1tif 55 :PVCRI T0547 51 :F 1tif 61 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=56028 # 1o4wA.43.20 read from T0547.t04.many.frag # found chain 1o4wA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1o4wA)K10 Warning: unaligning (T0547)G45 (1o4wA)V11 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1o4wA)R12 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRF 1o4wA 13 :CAVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56029 # 1tfr.43.11 read from T0547.t04.many.frag # found chain 1tfr in template set Warning: unaligning (T0547)Y43 because first residue in template chain is (1tfr)K12 Warning: unaligning (T0547)G45 (1tfr)G14 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1tfr)I15 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :K 1tfr 13 :E T0547 47 :LLLRF 1tfr 16 :CLIDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=56031 # 1xauA.43.73 read from T0547.t04.many.frag # found chain 1xauA in training set Warning: unaligning (T0547)G45 (1xauA)V75 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YK 1xauA 73 :RS T0547 46 :PLLLRF 1xauA 76 :PVFVLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=56033 # 1senA.43.44 read from T0547.t04.many.frag # found chain 1senA in training set T0547 43 :YKGPLLLRF 1senA 53 :SGLPLMVII Number of specific fragments extracted= 1 number of extra gaps= 0 total=56034 # 1q2lA.43.496 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 43 :YKGPLLLRF 1q2lA 520 :YDHPELIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56035 # 1llfA.43.111 read from T0547.t04.many.frag # found chain 1llfA in training set T0547 43 :YKGPLLLRF 1llfA 112 :ANLPVMLWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56036 # 1pii.43.79 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)P46 (1pii)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YKG 1pii 80 :YAS T0547 47 :LLLRF 1pii 84 :ISVLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=56038 # 1jmuB.43.53 read from T0547.t04.many.frag # found chain 1jmuB in template set Warning: unaligning (T0547)K44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jmuB)D97 T0547 45 :GPLLLRF 1jmuB 98 :EPLVVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56039 # 1r0vA.43.114 read from T0547.t04.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)G45 (1r0vA)L117 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 because of BadResidue code BAD_PEPTIDE in next template residue (1r0vA)L119 Warning: unaligning (T0547)L47 because of BadResidue code BAD_PEPTIDE at template residue (1r0vA)L119 T0547 43 :YK 1r0vA 115 :DE T0547 48 :LLRF 1r0vA 120 :AVVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=56041 # 1knwA.44.24 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K44 (1knwA)G25 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1knwA)C26 because E (beta_S) conformation "forbidden" or filtered. T0547 46 :PLLLRFP 1knwA 27 :PVWVYDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=56042 # 1uc2A.44.22 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)G45 (1uc2A)V24 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :K 1uc2A 23 :R T0547 46 :PLLLRFP 1uc2A 25 :PGRVYAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=56044 # 7odcA.44.36 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K44 (7odcA)K37 because L (left) conformation "forbidden" or filtered. T0547 45 :GPLLLRFP 7odcA 38 :DAFYVADL Number of specific fragments extracted= 1 number of extra gaps= 1 total=56045 # 1ytlA.44.35 read from T0547.t04.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)G45 (1ytlA)R37 because D (zeta) conformation "forbidden" or filtered. T0547 44 :K 1ytlA 36 :K T0547 46 :PLLLRFP 1ytlA 38 :PLLIVGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=56047 # 1sddA.44.158 read from T0547.t04.many.frag # found chain 1sddA in template set Warning: unaligning (T0547)K44 (1sddA)I159 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1sddA)G160 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :PLLLRFP 1sddA 161 :PLLICKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=56048 # 1h2wA.44.464 read from T0547.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)G45 (1h2wA)H466 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F51 (1h2wA)G472 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :K 1h2wA 465 :S T0547 46 :PLLLR 1h2wA 467 :PAFLY T0547 52 :P 1h2wA 473 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=56051 # 1w8sA.44.16 read from T0547.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)G45 (1w8sA)S18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1w8sA)I19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F51 (1w8sA)D24 because G (3-10) conformation "forbidden" or filtered. T0547 44 :K 1w8sA 17 :K T0547 47 :LLLR 1w8sA 20 :ILAY T0547 52 :P 1w8sA 25 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=56054 # 1o4wA.44.21 read from T0547.t04.many.frag # found chain 1o4wA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1o4wA)K10 Warning: unaligning (T0547)G45 (1o4wA)V11 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1o4wA)R12 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFP 1o4wA 13 :CAVVDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56055 # 1epuA.44.23 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)G45 (1epuA)W25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1epuA)K26 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :K 1epuA 24 :E T0547 47 :LLLRFP 1epuA 27 :VLIVDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=56057 # 1tfr.44.12 read from T0547.t04.many.frag # found chain 1tfr in template set Warning: unaligning (T0547)P46 (1tfr)I15 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :KG 1tfr 13 :EG T0547 47 :LLLRFP 1tfr 16 :CLIDFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=56059 # 2bjvA.44.28 read from T0547.t04.many.frag # found chain 2bjvA in training set T0547 44 :KGPLLLRFP 2bjvA 29 :DKPVLIIGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56060 # 1dj7B.44.49 read from T0547.t04.many.frag # found chain 1dj7B in template set Warning: unaligning (T0547)G45 (1dj7B)L51 because D (zeta) conformation "forbidden" or filtered. T0547 44 :K 1dj7B 50 :N T0547 46 :PLLLRFP 1dj7B 52 :PVLVKFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=56062 # 2ahmE.44.185 read from T0547.t04.many.frag # found chain 2ahmE in template set Warning: unaligning (T0547)P46 (2ahmE)P188 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (2ahmE)L194 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :KG 2ahmE 186 :AW T0547 47 :LLLRF 2ahmE 189 :LIVTA Number of specific fragments extracted= 2 number of extra gaps= 2 total=56064 # 1yt8A.44.62 read from T0547.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G45 (1yt8A)T64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1yt8A)Y69 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1yt8A)D71 because G (3-10) conformation "forbidden" or filtered. T0547 44 :K 1yt8A 63 :D T0547 46 :PLLL 1yt8A 65 :PITV T0547 51 :F 1yt8A 70 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=56067 # 1ufaA.44.51 read from T0547.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)G45 (1ufaA)A53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (1ufaA)F55 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :K 1ufaA 52 :E T0547 46 :P 1ufaA 54 :P T0547 48 :LLRFP 1ufaA 56 :TLGIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=56070 # 1jmuB.44.54 read from T0547.t04.many.frag # found chain 1jmuB in template set Warning: unaligning (T0547)K44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jmuB)D97 T0547 45 :GPLLLRFP 1jmuB 98 :EPLVVVTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56071 # 1gmxA.44.20 read from T0547.t04.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)G45 (1gmxA)V22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :K 1gmxA 21 :A T0547 47 :LLLRFP 1gmxA 24 :VDIRDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=56073 # 1wyzA.44.31 read from T0547.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0547)G45 (1wyzA)R33 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1wyzA)H34 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :K 1wyzA 32 :I T0547 47 :LLLRFP 1wyzA 35 :FIVEDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=56075 # 1tif.44.53 read from T0547.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0547)K44 (1tif)P54 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1tif)P55 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1tif)M60 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :PLLL 1tif 56 :VCRI T0547 51 :FP 1tif 61 :DY Number of specific fragments extracted= 2 number of extra gaps= 2 total=56077 # 1wnyA.44.54 read from T0547.t04.many.frag # found chain 1wnyA in training set Warning: unaligning (T0547)K44 (1wnyA)G254 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1wnyA)D255 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1wnyA)E256 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFP 1wnyA 257 :ALILEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=56078 # 1t7lA.44.173 read from T0547.t04.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 44 :KG 1t7lA 142 :ET T0547 47 :LLLRFP 1t7lA 145 :PWVIGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=56080 # 1rcqA.44.1 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)L47 (1rcqA)R5 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :KGP 1rcqA 2 :RPA T0547 48 :LLRFP 1rcqA 6 :ALIDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=56082 # 1vqoN.44.30 read from T0547.t04.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)P52 (1vqoN)K38 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :KGPLLLRF 1vqoN 30 :GKPRLVAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=56083 # 1r0vA.44.115 read from T0547.t04.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)P46 because of BadResidue code BAD_PEPTIDE in next template residue (1r0vA)L119 Warning: unaligning (T0547)L47 because of BadResidue code BAD_PEPTIDE at template residue (1r0vA)L119 T0547 44 :KG 1r0vA 116 :EL T0547 48 :LLRFP 1r0vA 120 :AVVDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=56085 # 1qwnA.44.122 read from T0547.t04.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G45 (1qwnA)M124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1qwnA)K125 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :K 1qwnA 123 :E T0547 47 :LLLRFP 1qwnA 126 :FIWAEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=56087 # 1senA.44.45 read from T0547.t04.many.frag # found chain 1senA in training set Warning: unaligning (T0547)K44 (1senA)G54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1senA)H62 because Y (epsilon') conformation "forbidden" or filtered. T0547 45 :GPLLLRF 1senA 55 :LPLMVII Number of specific fragments extracted= 1 number of extra gaps= 2 total=56088 # 1qmgA.44.122 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)P46 (1qmgA)V196 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :KG 1qmgA 194 :DL T0547 47 :LLLRFP 1qmgA 197 :LLLISD Number of specific fragments extracted= 2 number of extra gaps= 1 total=56090 # 1nwaA.44.113 read from T0547.t04.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P46 (1nwaA)A95 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :KG 1nwaA 93 :RS T0547 47 :LLLRFP 1nwaA 96 :IFYFDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=56092 # 1y44A.44.84 read from T0547.t04.many.frag # found chain 1y44A in template set Warning: unaligning (T0547)K44 (1y44A)E85 because G (3-10) conformation "forbidden" or filtered. T0547 45 :GPLLLRFP 1y44A 86 :DELTVYGP Number of specific fragments extracted= 1 number of extra gaps= 1 total=56093 # 1on3A.44.129 read from T0547.t04.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)K44 (1on3A)G131 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1on3A)D139 because D (zeta) conformation "forbidden" or filtered. T0547 45 :GPLLLRF 1on3A 132 :TPFLFFY Number of specific fragments extracted= 1 number of extra gaps= 2 total=56094 # 1knwA.45.25 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 45 :GPLLLRFPH 1knwA 26 :CPVWVYDAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56095 # 1uc2A.45.23 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)G45 (1uc2A)V24 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :PLLLRFPH 1uc2A 25 :PGRVYADE Number of specific fragments extracted= 1 number of extra gaps= 1 total=56096 # 7odcA.45.37 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G45 (7odcA)D38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (7odcA)F40 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :P 7odcA 39 :A T0547 48 :LLRFPH 7odcA 41 :YVADLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=56098 # 1xttA.45.0 read from T0547.t04.many.frag # found chain 1xttA in training set Warning: unaligning (T0547)P46 because first residue in template chain is (1xttA)P2 T0547 47 :LLLRFPH 1xttA 3 :LYVIDKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=56099 # 1sddA.45.159 read from T0547.t04.many.frag # found chain 1sddA in template set Warning: unaligning (T0547)H53 (1sddA)G168 because L (left) conformation "forbidden" or filtered. T0547 45 :GPLLLRFP 1sddA 160 :GPLLICKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=56100 # 1wyzA.45.32 read from T0547.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0547)P46 (1wyzA)H34 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1wyzA 33 :R T0547 47 :LLLRFPH 1wyzA 35 :FIVEDVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=56102 # 1epuA.45.24 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)P46 (1epuA)K26 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1epuA 25 :W T0547 47 :LLLRFPH 1epuA 27 :VLIVDQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=56104 # 1o4wA.45.22 read from T0547.t04.many.frag # found chain 1o4wA in template set Warning: unaligning (T0547)P46 (1o4wA)R12 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1o4wA 11 :V T0547 47 :LLLRFPH 1o4wA 13 :CAVVDTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=56106 # 1gmxA.45.21 read from T0547.t04.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1gmxA 22 :V T0547 47 :LLLRFPH 1gmxA 24 :VDIRDPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=56108 # 1w8sA.45.17 read from T0547.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P46 (1w8sA)I19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1w8sA)Y23 because D (zeta) conformation "forbidden" or filtered. T0547 45 :G 1w8sA 18 :S T0547 47 :LLL 1w8sA 20 :ILA T0547 51 :FPH 1w8sA 24 :DHG Number of specific fragments extracted= 3 number of extra gaps= 2 total=56111 # 1tfr.45.13 read from T0547.t04.many.frag # found chain 1tfr in template set Warning: unaligning (T0547)P46 (1tfr)I15 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1tfr 14 :G T0547 47 :LLLRFPH 1tfr 16 :CLIDFSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=56113 # 1nwaA.45.114 read from T0547.t04.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P46 (1nwaA)A95 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1nwaA 94 :S T0547 47 :LLLRFPH 1nwaA 96 :IFYFDEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=56115 # 1rcqA.45.2 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)L47 (1rcqA)R5 because Y (epsilon') conformation "forbidden" or filtered. T0547 45 :GP 1rcqA 3 :PA T0547 48 :LLRFPH 1rcqA 6 :ALIDLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=56117 # 1wnyA.45.55 read from T0547.t04.many.frag # found chain 1wnyA in training set Warning: unaligning (T0547)G45 (1wnyA)D255 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1wnyA)E256 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1wnyA)L260 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLL 1wnyA 257 :ALI T0547 51 :FPH 1wnyA 261 :EEG Number of specific fragments extracted= 2 number of extra gaps= 2 total=56119 # 1ytlA.45.36 read from T0547.t04.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)G45 (1ytlA)R37 because D (zeta) conformation "forbidden" or filtered. T0547 46 :PLLLRFPH 1ytlA 38 :PLLIVGPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=56120 # 1tif.45.54 read from T0547.t04.many.frag # found chain 1tif in training set T0547 45 :GPLLLRFPH 1tif 55 :PVCRIMDYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56121 # 1r0vA.45.116 read from T0547.t04.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)G45 (1r0vA)L117 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 because of BadResidue code BAD_PEPTIDE in next template residue (1r0vA)L119 Warning: unaligning (T0547)L47 because of BadResidue code BAD_PEPTIDE at template residue (1r0vA)L119 T0547 48 :LLRFPH 1r0vA 120 :AVVDEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=56122 # 1t3tA.45.860 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)L48 (1t3tA)D856 because Y (epsilon') conformation "forbidden" or filtered. T0547 45 :GPL 1t3tA 853 :KPA T0547 49 :LRFPH 1t3tA 857 :VRDVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=56124 # 2b20A.45.197 read from T0547.t04.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)R50 (2b20A)L200 because P (beta_P) conformation "forbidden" or filtered. T0547 45 :GPLLL 2b20A 195 :PLAVL T0547 51 :FPH 2b20A 201 :DGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=56126 # 1wfxA.45.117 read from T0547.t04.many.frag # found chain 1wfxA in template set T0547 45 :GPLLLRFPH 1wfxA 118 :KVHLTSSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56127 # 1jmuB.45.55 read from T0547.t04.many.frag # found chain 1jmuB in template set Warning: unaligning (T0547)G45 (1jmuB)E98 because P (beta_P) conformation "forbidden" or filtered. T0547 46 :PLLLRFPH 1jmuB 99 :PLVVVTEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=56128 # 1pkhA.45.62 read from T0547.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)P46 (1pkhA)S64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H53 (1pkhA)N71 because L (left) conformation "forbidden" or filtered. T0547 45 :G 1pkhA 63 :N T0547 47 :LLLRFP 1pkhA 65 :ILVCPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=56130 # 1h2wA.45.465 read from T0547.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)G45 (1h2wA)H466 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L48 (1h2wA)F469 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)H53 (1h2wA)G474 because L (left) conformation "forbidden" or filtered. T0547 46 :PL 1h2wA 467 :PA T0547 49 :LRFP 1h2wA 470 :LYGY Number of specific fragments extracted= 2 number of extra gaps= 3 total=56132 # 1ryoA.45.4 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P52 (1ryoA)S12 because S (epsilon) conformation "forbidden" or filtered. T0547 45 :GPLLLRF 1ryoA 5 :TVRWCAV T0547 53 :H 1ryoA 13 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=56134 # 2fckA.45.43 read from T0547.t04.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)G45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fckA)F46 Warning: unaligning (T0547)R50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fckA)F46 T0547 51 :FPH 2fckA 47 :SQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56135 # 1qmgA.45.123 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)P46 (1qmgA)V196 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1qmgA)I200 because P (beta_P) conformation "forbidden" or filtered. T0547 45 :G 1qmgA 195 :L T0547 47 :LLL 1qmgA 197 :LLL T0547 51 :FPH 1qmgA 201 :SDS Number of specific fragments extracted= 3 number of extra gaps= 2 total=56138 # 1nwaA.45.113 read from T0547.t04.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P52 (1nwaA)D100 because Y (epsilon') conformation "forbidden" or filtered. T0547 45 :GPLLLRF 1nwaA 93 :RSAIFYF T0547 53 :H 1nwaA 101 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=56140 # 1xrkA.45.63 read from T0547.t04.many.frag # found chain 1xrkA in training set Warning: unaligning (T0547)G45 (1xrkA)A64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1xrkA)W65 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPH 1xrkA 66 :VWVRGLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=56141 # 2bjvA.45.29 read from T0547.t04.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)G45 (2bjvA)K30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H53 (2bjvA)R38 because P (beta_P) conformation "forbidden" or filtered. T0547 46 :PLLLRFP 2bjvA 31 :PVLIIGE Number of specific fragments extracted= 1 number of extra gaps= 2 total=56142 # 1sg6A.45.37 read from T0547.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)P46 (1sg6A)Y39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1sg6A)T43 because Y (epsilon') conformation "forbidden" or filtered. T0547 45 :G 1sg6A 38 :T T0547 47 :LLL 1sg6A 40 :VLV T0547 51 :FPH 1sg6A 44 :DTN Number of specific fragments extracted= 3 number of extra gaps= 2 total=56145 # 1knwA.46.26 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 46 :PLLLRFPHL 1knwA 27 :PVWVYDAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56146 # 7odcA.46.38 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 46 :PLLLRFPHL 7odcA 39 :AFYVADLGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56147 # 1uc2A.46.24 read from T0547.t04.many.frag # found chain 1uc2A in template set T0547 46 :PLLLRFPHL 1uc2A 25 :PGRVYADEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56148 # 1xttA.46.1 read from T0547.t04.many.frag # found chain 1xttA in training set Warning: unaligning (T0547)P46 because first residue in template chain is (1xttA)P2 T0547 47 :LLLRFPHL 1xttA 3 :LYVIDKPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56149 # 1wyzA.46.33 read from T0547.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0547)P46 (1wyzA)H34 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1wyzA 35 :FIVEDVRS Number of specific fragments extracted= 1 number of extra gaps= 1 total=56150 # 1gmxA.46.22 read from T0547.t04.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1gmxA)R27 because P (beta_P) conformation "forbidden" or filtered. T0547 47 :LLL 1gmxA 24 :VDI T0547 51 :FPHL 1gmxA 28 :DPQS Number of specific fragments extracted= 2 number of extra gaps= 2 total=56152 # 1t3tA.46.861 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)L48 (1t3tA)D856 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :PL 1t3tA 854 :PA T0547 49 :LRFPHL 1t3tA 857 :VRDVAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=56154 # 1rcqA.46.3 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)L47 (1rcqA)R5 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :P 1rcqA 4 :A T0547 48 :LLRFPHL 1rcqA 6 :ALIDLQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=56156 # 1o4wA.46.23 read from T0547.t04.many.frag # found chain 1o4wA in template set Warning: unaligning (T0547)P46 (1o4wA)R12 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1o4wA 13 :CAVVDTNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=56157 # 1wfxA.46.118 read from T0547.t04.many.frag # found chain 1wfxA in template set T0547 46 :PLLLRFPHL 1wfxA 119 :VHLTSSLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=56158 # 1wnyA.46.56 read from T0547.t04.many.frag # found chain 1wnyA in training set Warning: unaligning (T0547)P46 (1wnyA)E256 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1wnyA 257 :ALILEEGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=56159 # 1epuA.46.25 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)P46 (1epuA)K26 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1epuA 27 :VLIVDQLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=56160 # 1tfr.46.14 read from T0547.t04.many.frag # found chain 1tfr in template set Warning: unaligning (T0547)P46 (1tfr)I15 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1tfr 16 :CLIDFSQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=56161 # 1nwaA.46.114 read from T0547.t04.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P52 (1nwaA)D100 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :PLLLRF 1nwaA 94 :SAIFYF T0547 53 :HL 1nwaA 101 :EQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=56163 # 1x7dA.46.0 read from T0547.t04.many.frag # found chain 1x7dA in training set Warning: unaligning (T0547)L47 because first residue in template chain is (1x7dA)T2 T0547 48 :LLRFPHL 1x7dA 3 :YFIDVPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56164 # 1lvaA.46.54 read from T0547.t04.many.frag # found chain 1lvaA in template set Warning: unaligning (T0547)P46 (1lvaA)D431 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1lvaA 432 :LYAISTER Number of specific fragments extracted= 1 number of extra gaps= 1 total=56165 # 1sddA.46.160 read from T0547.t04.many.frag # found chain 1sddA in template set T0547 46 :PLLLRFPHL 1sddA 161 :PLLICKKGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56166 # 1nwaA.46.115 read from T0547.t04.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P46 (1nwaA)A95 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1nwaA 96 :IFYFDEQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=56167 # 2fckA.46.44 read from T0547.t04.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)R50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fckA)F46 T0547 51 :FPHL 2fckA 47 :SQQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56168 # 1vpqA.46.79 read from T0547.t04.many.frag # found chain 1vpqA in template set Warning: unaligning (T0547)P46 (1vpqA)Y68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (1vpqA)F69 because Y (epsilon') conformation "forbidden" or filtered. T0547 48 :LLRFPHL 1vpqA 70 :TVKTPGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=56169 # 1ryoA.46.5 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 46 :PLLLRFPHL 1ryoA 6 :VRWCAVSEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56170 # 1w8sA.46.18 read from T0547.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P46 (1w8sA)I19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F51 (1w8sA)D24 because G (3-10) conformation "forbidden" or filtered. T0547 47 :LLLR 1w8sA 20 :ILAY T0547 52 :PHL 1w8sA 25 :HGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=56172 # 1mgtA.46.26 read from T0547.t04.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)P46 (1mgtA)I27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L48 (1mgtA)F29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L49 (1mgtA)A30 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :L 1mgtA 28 :A T0547 50 :RFPHL 1mgtA 31 :FDRGT Number of specific fragments extracted= 2 number of extra gaps= 2 total=56174 # 2b20A.46.198 read from T0547.t04.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)R50 (2b20A)L200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F51 (2b20A)D201 because L (left) conformation "forbidden" or filtered. T0547 46 :PLLL 2b20A 196 :LAVL T0547 52 :PHL 2b20A 202 :GEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=56176 # 1mw5A.46.16 read from T0547.t04.many.frag # found chain 1mw5A in template set T0547 46 :PLLLRFPHL 1mw5A 14 :PVKLYSVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56177 # 1tif.46.55 read from T0547.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0547)R50 (1tif)M60 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :PLLL 1tif 56 :VCRI T0547 51 :FPHL 1tif 61 :DYGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=56179 # 1bjt.46.35 read from T0547.t04.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)P46 (1bjt)T444 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1bjt)G450 because S (epsilon) conformation "forbidden" or filtered. T0547 47 :LLLRF 1bjt 445 :LVLTE T0547 53 :HL 1bjt 451 :DS Number of specific fragments extracted= 2 number of extra gaps= 2 total=56181 # 1m1nB.46.85 read from T0547.t04.many.frag # found chain 1m1nB in training set T0547 46 :PLLLRFPHL 1m1nB 87 :PYVHGSQGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=56182 # 1po5A.46.55 read from T0547.t04.many.frag # found chain 1po5A in training set Warning: unaligning (T0547)P46 (1po5A)V75 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1po5A 76 :VVLCGTDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=56183 # 1r26A.46.20 read from T0547.t04.many.frag # found chain 1r26A in training set Warning: unaligning (T0547)P46 because of BadResidue code BAD_PEPTIDE in next template residue (1r26A)V3 Warning: unaligning (T0547)L47 because of BadResidue code BAD_PEPTIDE at template residue (1r26A)V3 T0547 48 :LLRFPHL 1r26A 4 :DVYSVEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=56184 # 1knwA.47.27 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 47 :LLLRFPHLI 1knwA 28 :VWVYDAQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=56185 # 7odcA.47.39 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L47 (7odcA)F40 because Y (epsilon') conformation "forbidden" or filtered. T0547 48 :LLRFPHLI 7odcA 41 :YVADLGDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=56186 # 1uc2A.47.25 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)F51 (1uc2A)A30 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLLR 1uc2A 26 :GRVY T0547 52 :PHLI 1uc2A 31 :DEVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=56188 # 1t3tA.47.862 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)L48 (1t3tA)D856 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :L 1t3tA 855 :A T0547 49 :LRFPHLI 1t3tA 857 :VRDVAQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=56190 # 1xttA.47.2 read from T0547.t04.many.frag # found chain 1xttA in training set Warning: unaligning (T0547)F51 (1xttA)D7 because G (3-10) conformation "forbidden" or filtered. T0547 47 :LLLR 1xttA 3 :LYVI T0547 52 :PHLI 1xttA 8 :KPIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=56192 # 1rcqA.47.4 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)L47 (1rcqA)R5 because Y (epsilon') conformation "forbidden" or filtered. T0547 48 :LLRFPHLI 1rcqA 6 :ALIDLQAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=56193 # 1wyzA.47.34 read from T0547.t04.many.frag # found chain 1wyzA in template set T0547 47 :LLLRFPHLI 1wyzA 35 :FIVEDVRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56194 # 1wfxA.47.119 read from T0547.t04.many.frag # found chain 1wfxA in template set T0547 47 :LLLRFPHLI 1wfxA 120 :HLTSSLEDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56195 # 1ryoA.47.6 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P52 (1ryoA)S12 because S (epsilon) conformation "forbidden" or filtered. T0547 47 :LLLRF 1ryoA 7 :RWCAV T0547 53 :HLI 1ryoA 13 :EHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=56197 # 1lvaA.47.55 read from T0547.t04.many.frag # found chain 1lvaA in template set T0547 47 :LLLRFPHLI 1lvaA 432 :LYAISTERY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56198 # 1gmxA.47.23 read from T0547.t04.many.frag # found chain 1gmxA in training set T0547 47 :LLLRFPHLI 1gmxA 24 :VDIRDPQSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56199 # 1mgtA.47.27 read from T0547.t04.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)L48 (1mgtA)F29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L49 (1mgtA)A30 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :L 1mgtA 28 :A T0547 50 :RFPHLI 1mgtA 31 :FDRGTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=56201 # 1wnyA.47.57 read from T0547.t04.many.frag # found chain 1wnyA in training set Warning: unaligning (T0547)R50 (1wnyA)L260 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLL 1wnyA 257 :ALI T0547 51 :FPHLI 1wnyA 261 :EEGLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=56203 # 1x7dA.47.1 read from T0547.t04.many.frag # found chain 1x7dA in training set Warning: unaligning (T0547)L47 because first residue in template chain is (1x7dA)T2 T0547 48 :LLRFPHLI 1x7dA 3 :YFIDVPTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=56204 # 2fckA.47.45 read from T0547.t04.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)R50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fckA)F46 T0547 51 :FPHLI 2fckA 47 :SQQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56205 # 1fsgA.47.46 read from T0547.t04.many.frag # found chain 1fsgA in training set T0547 47 :LLLRFPHLI 1fsgA 44 :KILLPGGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56206 # 1vi6A.47.43 read from T0547.t04.many.frag # found chain 1vi6A in template set T0547 47 :LLLRFPHLI 1vi6A 43 :LYVLDIRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56207 # 1tfr.47.15 read from T0547.t04.many.frag # found chain 1tfr in template set T0547 47 :LLLRFPHLI 1tfr 16 :CLIDFSQIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56208 # 1o4wA.47.24 read from T0547.t04.many.frag # found chain 1o4wA in template set T0547 47 :LLLRFPHLI 1o4wA 13 :CAVVDTNVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56209 # 1vpqA.47.80 read from T0547.t04.many.frag # found chain 1vpqA in template set Warning: unaligning (T0547)L47 (1vpqA)F69 because Y (epsilon') conformation "forbidden" or filtered. T0547 48 :LLRFPHLI 1vpqA 70 :TVKTPGSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=56210 # 1mw5A.47.17 read from T0547.t04.many.frag # found chain 1mw5A in template set T0547 47 :LLLRFPHLI 1mw5A 15 :VKLYSVATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56211 # 1tif.47.56 read from T0547.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0547)R50 (1tif)M60 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLL 1tif 57 :CRI T0547 51 :FPHLI 1tif 61 :DYGKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=56213 # 1bjt.47.36 read from T0547.t04.many.frag # found chain 1bjt in template set T0547 47 :LLLRFPHLI 1bjt 445 :LVLTEGDSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56214 # 1bm8.47.71 read from T0547.t04.many.frag # found chain 1bm8 in training set Warning: unaligning (T0547)L47 (1bm8)G75 because Y (epsilon') conformation "forbidden" or filtered. T0547 48 :LLRFPHLI 1bm8 76 :TWVPLNIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=56215 # 1nwaA.47.115 read from T0547.t04.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)P52 (1nwaA)D100 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLLRF 1nwaA 95 :AIFYF T0547 53 :HLI 1nwaA 101 :EQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=56217 # 1po5A.47.56 read from T0547.t04.many.frag # found chain 1po5A in training set Warning: unaligning (T0547)F51 (1po5A)G80 because S (epsilon) conformation "forbidden" or filtered. T0547 47 :LLLR 1po5A 76 :VVLC T0547 52 :PHLI 1po5A 81 :TDAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=56219 # 1uslA.47.13 read from T0547.t04.many.frag # found chain 1uslA in template set T0547 47 :LLLRFPHLI 1uslA 6 :VYLGADHAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56220 # 1zhaA.47.10 read from T0547.t04.many.frag # found chain 1zhaA in template set T0547 47 :LLLRFPHLI 1zhaA 1011 :CAIESEELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56221 # 2ak3A.47.32 read from T0547.t04.many.frag # found chain 2ak3A in template set T0547 47 :LLLRFPHLI 2ak3A 32 :KHLSSGDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56222 # 1fjgJ.47.7 read from T0547.t04.many.frag # found chain 1fjgJ in template set Warning: unaligning (T0547)L49 (1fjgJ)G10 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LL 1fjgJ 8 :LR T0547 50 :RFPHLI 1fjgJ 11 :FDHKTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=56224 # 1xttA.48.3 read from T0547.t04.many.frag # found chain 1xttA in training set T0547 48 :LLRFPHLIQ 1xttA 4 :YVIDKPITL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56225 # 1uc2A.48.26 read from T0547.t04.many.frag # found chain 1uc2A in template set T0547 48 :LLRFPHLIQ 1uc2A 27 :RVYADEVLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56226 # 1t3tA.48.863 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)L48 (1t3tA)D856 because Y (epsilon') conformation "forbidden" or filtered. T0547 49 :LRFPHLIQ 1t3tA 857 :VRDVAQLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=56227 # 1ryoA.48.7 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 48 :LLRFPHLIQ 1ryoA 8 :WCAVSEHEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56228 # 1mgtA.48.28 read from T0547.t04.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)L48 (1mgtA)F29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L49 (1mgtA)A30 because Y (epsilon') conformation "forbidden" or filtered. T0547 50 :RFPHLIQ 1mgtA 31 :FDRGTLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=56229 # 2fckA.48.46 read from T0547.t04.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)R50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fckA)F46 T0547 51 :FPHLIQ 2fckA 47 :SQQEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56230 # 7odcA.48.40 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 48 :LLRFPHLIQ 7odcA 41 :YVADLGDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56231 # 1knwA.48.28 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 48 :LLRFPHLIQ 1knwA 29 :WVYDAQIIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56232 # 1lvaA.48.56 read from T0547.t04.many.frag # found chain 1lvaA in template set T0547 48 :LLRFPHLIQ 1lvaA 433 :YAISTERYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56233 # 1rcqA.48.5 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 48 :LLRFPHLIQ 1rcqA 6 :ALIDLQALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56234 # 1fsgA.48.47 read from T0547.t04.many.frag # found chain 1fsgA in training set Warning: unaligning (T0547)R50 (1fsgA)L47 because D (zeta) conformation "forbidden" or filtered. T0547 48 :LL 1fsgA 45 :IL T0547 51 :FPHLIQ 1fsgA 48 :PGGLVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=56236 # 1wyzA.48.35 read from T0547.t04.many.frag # found chain 1wyzA in template set T0547 48 :LLRFPHLIQ 1wyzA 36 :IVEDVRSAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56237 # 1x7dA.48.2 read from T0547.t04.many.frag # found chain 1x7dA in training set T0547 48 :LLRFPHLIQ 1x7dA 3 :YFIDVPTMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56238 # 1vi6A.48.44 read from T0547.t04.many.frag # found chain 1vi6A in template set Warning: unaligning (T0547)R50 (1vi6A)L46 because P (beta_P) conformation "forbidden" or filtered. T0547 48 :LL 1vi6A 44 :YV T0547 51 :FPHLIQ 1vi6A 47 :DIRKLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=56240 # 1fjgJ.48.8 read from T0547.t04.many.frag # found chain 1fjgJ in template set T0547 48 :LLRFPHLIQ 1fjgJ 9 :RGFDHKTLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56241 # 1mw5A.48.18 read from T0547.t04.many.frag # found chain 1mw5A in template set T0547 48 :LLRFPHLIQ 1mw5A 16 :KLYSVATLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56242 # 1wfxA.48.120 read from T0547.t04.many.frag # found chain 1wfxA in template set T0547 48 :LLRFPHLIQ 1wfxA 121 :LTSSLEDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56243 # 1v96A.48.68 read from T0547.t04.many.frag # found chain 1v96A in training set T0547 48 :LLRFPHLIQ 1v96A 69 :IVPLLDDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56244 # 1of8A.48.76 read from T0547.t04.many.frag # found chain 1of8A in training set T0547 48 :LLRFPHLIQ 1of8A 77 :SIHDLEAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56245 # 1yq2A.48.343 read from T0547.t04.many.frag # found chain 1yq2A in template set T0547 48 :LLRFPHLIQ 1yq2A 343 :RVFDEAGAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56246 # 2bh4X.48.68 read from T0547.t04.many.frag # found chain 2bh4X in template set T0547 48 :LLRFPHLIQ 2bh4X 69 :MVWSEADLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56247 # 1bm8.48.72 read from T0547.t04.many.frag # found chain 1bm8 in training set T0547 48 :LLRFPHLIQ 1bm8 76 :TWVPLNIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56248 # 1zhaA.48.11 read from T0547.t04.many.frag # found chain 1zhaA in template set Warning: unaligning (T0547)F51 (1zhaA)S1015 because Y (epsilon') conformation "forbidden" or filtered. T0547 48 :LLR 1zhaA 1012 :AIE T0547 52 :PHLIQ 1zhaA 1016 :EELLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=56250 # 1pq4A.48.133 read from T0547.t04.many.frag # found chain 1pq4A in template set T0547 48 :LLRFPHLIQ 1pq4A 180 :IWLSPTLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56251 # 1gmxA.48.24 read from T0547.t04.many.frag # found chain 1gmxA in training set T0547 48 :LLRFPHLIQ 1gmxA 25 :DIRDPQSFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56252 # 1jakA.48.49 read from T0547.t04.many.frag # found chain 1jakA in training set Warning: unaligning (T0547)P52 (1jakA)S48 because E (beta_S) conformation "forbidden" or filtered. T0547 48 :LLRF 1jakA 44 :RVDD T0547 53 :HLIQ 1jakA 49 :REAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=56254 # 1po5A.48.57 read from T0547.t04.many.frag # found chain 1po5A in training set Warning: unaligning (T0547)F51 (1po5A)G80 because S (epsilon) conformation "forbidden" or filtered. T0547 48 :LLR 1po5A 77 :VLC T0547 52 :PHLIQ 1po5A 81 :TDAIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=56256 # 1eyeA.48.23 read from T0547.t04.many.frag # found chain 1eyeA in template set T0547 48 :LLRFPHLIQ 1eyeA 24 :CYLDLDDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56257 # 1kzfA.48.120 read from T0547.t04.many.frag # found chain 1kzfA in training set T0547 48 :LLRFPHLIQ 1kzfA 101 :FFVDKARAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56258 # 1bjt.48.37 read from T0547.t04.many.frag # found chain 1bjt in template set T0547 48 :LLRFPHLIQ 1bjt 446 :VLTEGDSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56259 # 1mgtA.49.29 read from T0547.t04.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)L49 (1mgtA)A30 because Y (epsilon') conformation "forbidden" or filtered. T0547 50 :RFPHLIQK 1mgtA 31 :FDRGTLMK Number of specific fragments extracted= 1 number of extra gaps= 1 total=56260 # 1t3tA.49.864 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 49 :LRFPHLIQK 1t3tA 857 :VRDVAQLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56261 # 1rcqA.49.6 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 49 :LRFPHLIQK 1rcqA 7 :LIDLQALRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56262 # 2fckA.49.47 read from T0547.t04.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)R50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fckA)F46 T0547 51 :FPHLIQK 2fckA 47 :SQQEAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56263 # 1ryoA.49.8 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P52 (1ryoA)S12 because S (epsilon) conformation "forbidden" or filtered. T0547 49 :LRF 1ryoA 9 :CAV T0547 53 :HLIQK 1ryoA 13 :EHEAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=56265 # 1xttA.49.4 read from T0547.t04.many.frag # found chain 1xttA in training set T0547 49 :LRFPHLIQK 1xttA 5 :VIDKPITLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56266 # 7odcA.49.41 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 49 :LRFPHLIQK 7odcA 42 :VADLGDILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56267 # 1fsgA.49.48 read from T0547.t04.many.frag # found chain 1fsgA in training set T0547 49 :LRFPHLIQK 1fsgA 46 :LLPGGLVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56268 # 1wyzA.49.36 read from T0547.t04.many.frag # found chain 1wyzA in template set T0547 49 :LRFPHLIQK 1wyzA 37 :VEDVRSARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56269 # 1lvaA.49.57 read from T0547.t04.many.frag # found chain 1lvaA in template set T0547 49 :LRFPHLIQK 1lvaA 434 :AISTERYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56270 # 1mw5A.49.19 read from T0547.t04.many.frag # found chain 1mw5A in template set T0547 49 :LRFPHLIQK 1mw5A 17 :LYSVATLFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56271 # 1uc2A.49.27 read from T0547.t04.many.frag # found chain 1uc2A in template set T0547 49 :LRFPHLIQK 1uc2A 28 :VYADEVLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56272 # 1v96A.49.69 read from T0547.t04.many.frag # found chain 1v96A in training set T0547 49 :LRFPHLIQK 1v96A 70 :VPLLDDIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56273 # 1of8A.49.77 read from T0547.t04.many.frag # found chain 1of8A in training set T0547 49 :LRFPHLIQK 1of8A 78 :IHDLEAAQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56274 # 1fjgJ.49.9 read from T0547.t04.many.frag # found chain 1fjgJ in template set Warning: unaligning (T0547)L49 (1fjgJ)G10 because Y (epsilon') conformation "forbidden" or filtered. T0547 50 :RFPHLIQK 1fjgJ 11 :FDHKTLDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=56275 # 1vi6A.49.45 read from T0547.t04.many.frag # found chain 1vi6A in template set T0547 49 :LRFPHLIQK 1vi6A 45 :VLDIRKLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56276 # 1jakA.49.50 read from T0547.t04.many.frag # found chain 1jakA in training set Warning: unaligning (T0547)P52 (1jakA)S48 because E (beta_S) conformation "forbidden" or filtered. T0547 49 :LRF 1jakA 45 :VDD T0547 53 :HLIQK 1jakA 49 :REARR Number of specific fragments extracted= 2 number of extra gaps= 1 total=56278 # 1szwA.49.159 read from T0547.t04.many.frag # found chain 1szwA in template set T0547 49 :LRFPHLIQK 1szwA 138 :VSNRDDVEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56279 # 2bh4X.49.69 read from T0547.t04.many.frag # found chain 2bh4X in template set T0547 49 :LRFPHLIQK 2bh4X 70 :VWSEADLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56280 # 1yq2A.49.344 read from T0547.t04.many.frag # found chain 1yq2A in template set T0547 49 :LRFPHLIQK 1yq2A 344 :VFDEAGARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56281 # 1eyeA.49.24 read from T0547.t04.many.frag # found chain 1eyeA in template set T0547 49 :LRFPHLIQK 1eyeA 25 :YLDLDDAVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56282 # 1zhaA.49.12 read from T0547.t04.many.frag # found chain 1zhaA in template set T0547 49 :LRFPHLIQK 1zhaA 1013 :IESEELLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56283 # 1pq4A.49.134 read from T0547.t04.many.frag # found chain 1pq4A in template set T0547 49 :LRFPHLIQK 1pq4A 181 :WLSPTLVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56284 # 1x7dA.49.3 read from T0547.t04.many.frag # found chain 1x7dA in training set Warning: unaligning (T0547)R50 (1x7dA)I5 because D (zeta) conformation "forbidden" or filtered. T0547 49 :L 1x7dA 4 :F T0547 51 :FPHLIQK 1x7dA 6 :DVPTMSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=56286 # 1bm8.49.73 read from T0547.t04.many.frag # found chain 1bm8 in training set T0547 49 :LRFPHLIQK 1bm8 77 :WVPLNIAKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56287 # 1h0hB.49.162 read from T0547.t04.many.frag # found chain 1h0hB in training set T0547 49 :LRFPHLIQK 1h0hB 163 :FGDLSEMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56288 # 1knwA.49.29 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 49 :LRFPHLIQK 1knwA 30 :VYDAQIIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56289 # 1jqnA.49.345 read from T0547.t04.many.frag # found chain 1jqnA in template set T0547 49 :LRFPHLIQK 1jqnA 346 :LTQNEELWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56290 # 1ls1A.49.20 read from T0547.t04.many.frag # found chain 1ls1A in training set T0547 49 :LRFPHLIQK 1ls1A 21 :RITEEDLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56291 # 1qv9A.49.42 read from T0547.t04.many.frag # found chain 1qv9A in training set Warning: unaligning (T0547)R50 (1qv9A)M44 because G (3-10) conformation "forbidden" or filtered. T0547 49 :L 1qv9A 43 :K T0547 51 :FPHLIQK 1qv9A 45 :DPECVEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=56293 # 1rcqA.50.7 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 50 :RFPHLIQKQ 1rcqA 8 :IDLQALRHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56294 # 1mgtA.50.30 read from T0547.t04.many.frag # found chain 1mgtA in training set T0547 50 :RFPHLIQKQ 1mgtA 31 :FDRGTLMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56295 # 1fsgA.50.49 read from T0547.t04.many.frag # found chain 1fsgA in training set T0547 50 :RFPHLIQKQ 1fsgA 47 :LPGGLVKDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56296 # 1v96A.50.70 read from T0547.t04.many.frag # found chain 1v96A in training set T0547 50 :RFPHLIQKQ 1v96A 71 :PLLDDIAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56297 # 7odcA.50.42 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 50 :RFPHLIQKQ 7odcA 43 :ADLGDILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56298 # 1ryoA.50.9 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P52 (1ryoA)S12 because S (epsilon) conformation "forbidden" or filtered. T0547 50 :RF 1ryoA 10 :AV T0547 53 :HLIQKQ 1ryoA 13 :EHEATK Number of specific fragments extracted= 2 number of extra gaps= 1 total=56300 # 1xttA.50.5 read from T0547.t04.many.frag # found chain 1xttA in training set T0547 50 :RFPHLIQKQ 1xttA 6 :IDKPITLHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56301 # 1t3tA.50.865 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 50 :RFPHLIQKQ 1t3tA 858 :RDVAQLKGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56302 # 1v4sA.50.14 read from T0547.t04.many.frag # found chain 1v4sA in template set T0547 50 :RFPHLIQKQ 1v4sA 25 :LQEEDLKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56303 # 1jqnA.50.346 read from T0547.t04.many.frag # found chain 1jqnA in template set T0547 50 :RFPHLIQKQ 1jqnA 347 :TQNEELWEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=56304 # 1qv9A.50.43 read from T0547.t04.many.frag # found chain 1qv9A in training set T0547 50 :RFPHLIQKQ 1qv9A 44 :MDPECVEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56305 # 1uc2A.50.28 read from T0547.t04.many.frag # found chain 1uc2A in template set T0547 50 :RFPHLIQKQ 1uc2A 29 :YADEVLLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56306 # 1wdpA.50.29 read from T0547.t04.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)R50 because of BadResidue code BAD_PEPTIDE at template residue (1wdpA)E30 T0547 51 :FPHLIQKQ 1wdpA 31 :DPDGLKEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=56307 # 2fckA.50.48 read from T0547.t04.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)R50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fckA)F46 T0547 51 :FPHLIQKQ 2fckA 47 :SQQEAEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56308 # 1eyeA.50.25 read from T0547.t04.many.frag # found chain 1eyeA in template set T0547 50 :RFPHLIQKQ 1eyeA 26 :LDLDDAVKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56309 # 1oe4A.50.2 read from T0547.t04.many.frag # found chain 1oe4A in template set T0547 50 :RFPHLIQKQ 1oe4A 37 :SPADSFLKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56310 # 1vi6A.50.46 read from T0547.t04.many.frag # found chain 1vi6A in template set T0547 50 :RFPHLIQKQ 1vi6A 46 :LDIRKLDER Number of specific fragments extracted= 1 number of extra gaps= 0 total=56311 # 1zuwA.50.44 read from T0547.t04.many.frag # found chain 1zuwA in training set T0547 50 :RFPHLIQKQ 1zuwA 45 :RPEEEVLQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56312 # 2d0tA.50.193 read from T0547.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0547)R50 (2d0tA)Q191 because L (left) conformation "forbidden" or filtered. T0547 51 :FPHLIQKQ 2d0tA 192 :ERDTLLKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=56313 # 1fjgJ.50.10 read from T0547.t04.many.frag # found chain 1fjgJ in template set T0547 50 :RFPHLIQKQ 1fjgJ 11 :FDHKTLDAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56314 # 1ls1A.50.21 read from T0547.t04.many.frag # found chain 1ls1A in training set T0547 50 :RFPHLIQKQ 1ls1A 22 :ITEEDLKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56315 # 1wyzA.50.37 read from T0547.t04.many.frag # found chain 1wyzA in template set T0547 50 :RFPHLIQKQ 1wyzA 38 :EDVRSARRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56316 # 1tr9A.50.37 read from T0547.t04.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)F51 (1tr9A)D38 because Y (epsilon') conformation "forbidden" or filtered. T0547 50 :R 1tr9A 37 :H T0547 52 :PHLIQKQ 1tr9A 39 :NQQLLAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=56318 # 1szwA.50.160 read from T0547.t04.many.frag # found chain 1szwA in template set T0547 50 :RFPHLIQKQ 1szwA 139 :SNRDDVEQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56319 # 1eokA.50.62 read from T0547.t04.many.frag # found chain 1eokA in training set T0547 50 :RFPHLIQKQ 1eokA 63 :KSYKDLDTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56320 # 1of8A.50.78 read from T0547.t04.many.frag # found chain 1of8A in training set T0547 50 :RFPHLIQKQ 1of8A 79 :HDLEAAQEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56321 # 1mw5A.50.20 read from T0547.t04.many.frag # found chain 1mw5A in template set T0547 50 :RFPHLIQKQ 1mw5A 18 :YSVATLFHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56322 # 1zhaA.50.13 read from T0547.t04.many.frag # found chain 1zhaA in template set T0547 50 :RFPHLIQKQ 1zhaA 1014 :ESEELLLKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56323 # 1ra0A.50.98 read from T0547.t04.many.frag # found chain 1ra0A in training set T0547 50 :RFPHLIQKQ 1ra0A 95 :LTHDDVKQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56324 # 1zroA.50.130 read from T0547.t04.many.frag # found chain 1zroA in template set Warning: unaligning (T0547)H53 (1zroA)H134 because H (helix) conformation "forbidden" or filtered. T0547 50 :RFP 1zroA 131 :ISE T0547 54 :LIQKQ 1zroA 135 :KIKNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=56326 # 1rcqA.51.8 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 51 :FPHLIQKQI 1rcqA 9 :DLQALRHNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56327 # 1mgtA.51.31 read from T0547.t04.many.frag # found chain 1mgtA in training set T0547 51 :FPHLIQKQI 1mgtA 32 :DRGTLMKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56328 # 1fsgA.51.50 read from T0547.t04.many.frag # found chain 1fsgA in training set T0547 51 :FPHLIQKQI 1fsgA 48 :PGGLVKDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56329 # 7odcA.51.43 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 51 :FPHLIQKQI 7odcA 44 :DLGDILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56330 # 1v4sA.51.15 read from T0547.t04.many.frag # found chain 1v4sA in template set T0547 51 :FPHLIQKQI 1v4sA 26 :QEEDLKKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=56331 # 1wdpA.51.30 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 51 :FPHLIQKQI 1wdpA 31 :DPDGLKEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56332 # 1v96A.51.71 read from T0547.t04.many.frag # found chain 1v96A in training set T0547 51 :FPHLIQKQI 1v96A 72 :LLDDIAIKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56333 # 2d0tA.51.194 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 51 :FPHLIQKQI 2d0tA 192 :ERDTLLKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56334 # 1ryoA.51.10 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 51 :FPHLIQKQI 1ryoA 11 :VSEHEATKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=56335 # 1qv9A.51.44 read from T0547.t04.many.frag # found chain 1qv9A in training set T0547 51 :FPHLIQKQI 1qv9A 45 :DPECVEAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56336 # 1mw5A.51.21 read from T0547.t04.many.frag # found chain 1mw5A in template set T0547 51 :FPHLIQKQI 1mw5A 19 :SVATLFHEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56337 # 1eokA.51.63 read from T0547.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0547)F51 (1eokA)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 52 :PHLIQKQI 1eokA 65 :YKDLDTQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=56338 # 1h70A.51.27 read from T0547.t04.many.frag # found chain 1h70A in training set T0547 51 :FPHLIQKQI 1h70A 27 :DYAKALEQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56339 # 1zuwA.51.45 read from T0547.t04.many.frag # found chain 1zuwA in training set T0547 51 :FPHLIQKQI 1zuwA 46 :PEEEVLQYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56340 # 1k3sA.51.89 read from T0547.t04.many.frag # found chain 1k3sA in template set T0547 51 :FPHLIQKQI 1k3sA 90 :TEEEALTGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56341 # 1tr9A.51.38 read from T0547.t04.many.frag # found chain 1tr9A in training set T0547 51 :FPHLIQKQI 1tr9A 38 :DNQQLLALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56342 # 1eyeA.51.26 read from T0547.t04.many.frag # found chain 1eyeA in template set T0547 51 :FPHLIQKQI 1eyeA 27 :DLDDAVKHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56343 1zybA expands to /projects/compbio/data/pdb/1zyb.pdb.gz 1zybA:Skipped atom 11, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 13, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 15, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 17, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 80, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 82, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 84, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 86, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 90, because occupancy 0.500 <= existing 0.500 in 1zybA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 223, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 225, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 227, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 229, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 231, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 427, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 429, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 431, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 433, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 435, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 528, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 530, because occupancy 0.500 <= existing 0.500 in 1zybA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 938, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 940, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 942, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 972, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 974, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1080, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1082, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1084, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1086, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1088, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1090, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1092, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1094, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1138, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1140, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1142, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1144, because occupancy 0.500 <= existing 0.500 in 1zybA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1240, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1242, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1244, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1246, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1278, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1280, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1282, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1284, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1286, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1288, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1290, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1382, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1384, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1503, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1505, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1507, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1509, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1511, because occupancy 0.300 <= existing 0.700 in 1zybA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zybA.51.132 read from T0547.t04.many.frag # adding 1zybA to template set # found chain 1zybA in template set Warning: unaligning (T0547)P52 (1zybA)Y122 because E (beta_S) conformation "forbidden" or filtered. T0547 51 :F 1zybA 121 :R T0547 53 :HLIQKQI 1zybA 123 :DIFRLNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=56345 # 1xttA.51.6 read from T0547.t04.many.frag # found chain 1xttA in training set T0547 51 :FPHLIQKQI 1xttA 7 :DKPITLHIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56346 # 1jqnA.51.347 read from T0547.t04.many.frag # found chain 1jqnA in template set T0547 51 :FPHLIQKQI 1jqnA 348 :QNEELWEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56347 # 1oe4A.51.3 read from T0547.t04.many.frag # found chain 1oe4A in template set T0547 51 :FPHLIQKQI 1oe4A 38 :PADSFLKVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56348 # 1t3tA.51.866 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 51 :FPHLIQKQI 1t3tA 859 :DVAQLKGFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56349 # 2fckA.51.49 read from T0547.t04.many.frag # found chain 2fckA in training set T0547 51 :FPHLIQKQI 2fckA 47 :SQQEAEQFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56350 # 1bykA.51.42 read from T0547.t04.many.frag # found chain 1bykA in template set T0547 51 :FPHLIQKQI 1bykA 103 :SPQLVAEHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56351 # 1ycdA.51.16 read from T0547.t04.many.frag # found chain 1ycdA in training set T0547 51 :FPHLIQKQI 1ycdA 17 :NGKVFSEKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56352 # 1r5lA.51.10 read from T0547.t04.many.frag # found chain 1r5lA in training set T0547 51 :FPHLIQKQI 1r5lA 27 :GLAALRRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56353 # 1b25A.51.210 read from T0547.t04.many.frag # found chain 1b25A in template set T0547 51 :FPHLIQKQI 1b25A 211 :DKEELKKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56354 # 1of8A.51.79 read from T0547.t04.many.frag # found chain 1of8A in training set T0547 51 :FPHLIQKQI 1of8A 80 :DLEAAQEYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56355 # 1onrA.51.102 read from T0547.t04.many.frag # found chain 1onrA in template set T0547 51 :FPHLIQKQI 1onrA 104 :DTEASIAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56356 # 1nw3A.51.66 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 51 :FPHLIQKQI 1nw3A 67 :SFESMQRLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=56357 # 1rcqA.52.9 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 52 :PHLIQKQIE 1rcqA 10 :LQALRHNYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56358 # 1mgtA.52.32 read from T0547.t04.many.frag # found chain 1mgtA in training set T0547 52 :PHLIQKQIE 1mgtA 33 :RGTLMKRIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56359 # 7odcA.52.44 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 52 :PHLIQKQIE 7odcA 45 :LGDILKKHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56360 # 1h70A.52.28 read from T0547.t04.many.frag # found chain 1h70A in training set T0547 52 :PHLIQKQIE 1h70A 28 :YAKALEQHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56361 # 1k3sA.52.90 read from T0547.t04.many.frag # found chain 1k3sA in template set T0547 52 :PHLIQKQIE 1k3sA 91 :EEEALTGFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56362 # 1fsgA.52.51 read from T0547.t04.many.frag # found chain 1fsgA in training set T0547 52 :PHLIQKQIE 1fsgA 49 :GGLVKDRVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56363 # 1zybA.52.133 read from T0547.t04.many.frag # found chain 1zybA in template set Warning: unaligning (T0547)P52 (1zybA)Y122 because E (beta_S) conformation "forbidden" or filtered. T0547 53 :HLIQKQIE 1zybA 123 :DIFRLNYM Number of specific fragments extracted= 1 number of extra gaps= 1 total=56364 # 1wdpA.52.31 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 52 :PHLIQKQIE 1wdpA 32 :PDGLKEQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56365 # 2d0tA.52.195 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 52 :PHLIQKQIE 2d0tA 193 :RDTLLKALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56366 # 1v4sA.52.16 read from T0547.t04.many.frag # found chain 1v4sA in template set T0547 52 :PHLIQKQIE 1v4sA 27 :EEDLKKVMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56367 # 1oe4A.52.4 read from T0547.t04.many.frag # found chain 1oe4A in template set T0547 52 :PHLIQKQIE 1oe4A 39 :ADSFLKVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56368 # 1jqnA.52.348 read from T0547.t04.many.frag # found chain 1jqnA in template set T0547 52 :PHLIQKQIE 1jqnA 349 :NEELWEPLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56369 # 1qv9A.52.45 read from T0547.t04.many.frag # found chain 1qv9A in training set T0547 52 :PHLIQKQIE 1qv9A 46 :PECVEAAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56370 # 1eokA.52.64 read from T0547.t04.many.frag # found chain 1eokA in training set T0547 52 :PHLIQKQIE 1eokA 65 :YKDLDTQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56371 # 1onrA.52.103 read from T0547.t04.many.frag # found chain 1onrA in template set T0547 52 :PHLIQKQIE 1onrA 105 :TEASIAKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56372 # 1nw3A.52.67 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 52 :PHLIQKQIE 1nw3A 68 :FESMQRLCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56373 # 1ryoA.52.11 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 52 :PHLIQKQIE 1ryoA 12 :SEHEATKCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56374 # 1zuwA.52.46 read from T0547.t04.many.frag # found chain 1zuwA in training set T0547 52 :PHLIQKQIE 1zuwA 47 :EEEVLQYTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=56375 # 1v96A.52.72 read from T0547.t04.many.frag # found chain 1v96A in training set T0547 52 :PHLIQKQIE 1v96A 73 :LDDIAIKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56376 # 1y0kA.52.6 read from T0547.t04.many.frag # found chain 1y0kA in training set T0547 52 :PHLIQKQIE 1y0kA 7 :LRLLTRQAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56377 # 1tr9A.52.39 read from T0547.t04.many.frag # found chain 1tr9A in training set T0547 52 :PHLIQKQIE 1tr9A 39 :NQQLLALNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56378 # 2fn0A.52.174 read from T0547.t04.many.frag # found chain 2fn0A in template set T0547 52 :PHLIQKQIE 2fn0A 172 :GEAYKQQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56379 # 1vi6A.52.48 read from T0547.t04.many.frag # found chain 1vi6A in template set T0547 52 :PHLIQKQIE 1vi6A 48 :IRKLDERIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56380 # 1o9rA.52.47 read from T0547.t04.many.frag # found chain 1o9rA in training set Warning: unaligning (T0547)P52 because of BadResidue code BAD_PEPTIDE in next template residue (1o9rA)I49 Warning: unaligning (T0547)H53 because of BadResidue code BAD_PEPTIDE at template residue (1o9rA)I49 T0547 54 :LIQKQIE 1o9rA 50 :AVHELLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=56381 # 1eyeA.52.27 read from T0547.t04.many.frag # found chain 1eyeA in template set T0547 52 :PHLIQKQIE 1eyeA 28 :LDDAVKHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56382 # 1j2zA.52.206 read from T0547.t04.many.frag # found chain 1j2zA in template set T0547 52 :PHLIQKQIE 1j2zA 207 :IDFIYALYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56383 # 1k0fA.52.128 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 52 :PHLIQKQIE 1k0fA 160 :TREFTQRYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56384 # 1xttA.52.7 read from T0547.t04.many.frag # found chain 1xttA in training set T0547 52 :PHLIQKQIE 1xttA 8 :KPITLHILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56385 # 1in0A.52.11 read from T0547.t04.many.frag # found chain 1in0A in template set T0547 52 :PHLIQKQIE 1in0A 12 :LHEVRNAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56386 # 1s4bP.52.14 read from T0547.t04.many.frag # found chain 1s4bP in template set T0547 52 :PHLIQKQIE 1s4bP 30 :AQQIEERTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56387 # 1mgtA.53.33 read from T0547.t04.many.frag # found chain 1mgtA in training set T0547 53 :HLIQKQIEN 1mgtA 34 :GTLMKRIHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56388 # 1h70A.53.29 read from T0547.t04.many.frag # found chain 1h70A in training set T0547 53 :HLIQKQIEN 1h70A 29 :AKALEQHNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56389 # 1zybA.53.134 read from T0547.t04.many.frag # found chain 1zybA in template set T0547 53 :HLIQKQIEN 1zybA 123 :DIFRLNYMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56390 # 1rcqA.53.10 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 53 :HLIQKQIEN 1rcqA 11 :QALRHNYRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56391 # 1k3sA.53.91 read from T0547.t04.many.frag # found chain 1k3sA in template set T0547 53 :HLIQKQIEN 1k3sA 92 :EEALTGFEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56392 # 1fsgA.53.52 read from T0547.t04.many.frag # found chain 1fsgA in training set T0547 53 :HLIQKQIEN 1fsgA 50 :GLVKDRVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56393 # 2d0tA.53.196 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 53 :HLIQKQIEN 2d0tA 194 :DTLLKALLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56394 # 7odcA.53.45 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 53 :HLIQKQIEN 7odcA 46 :GDILKKHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56395 # 1qv9A.53.46 read from T0547.t04.many.frag # found chain 1qv9A in training set T0547 53 :HLIQKQIEN 1qv9A 47 :ECVEAAVEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=56396 # 1onrA.53.104 read from T0547.t04.many.frag # found chain 1onrA in template set T0547 53 :HLIQKQIEN 1onrA 106 :EASIAKAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56397 # 1wdpA.53.32 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 53 :HLIQKQIEN 1wdpA 33 :DGLKEQLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56398 # 1eokA.53.65 read from T0547.t04.many.frag # found chain 1eokA in training set T0547 53 :HLIQKQIEN 1eokA 66 :KDLDTQIRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56399 # 1v4sA.53.17 read from T0547.t04.many.frag # found chain 1v4sA in template set T0547 53 :HLIQKQIEN 1v4sA 28 :EDLKKVMRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56400 # 1ryoA.53.12 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 53 :HLIQKQIEN 1ryoA 13 :EHEATKCQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56401 # 1tr9A.53.40 read from T0547.t04.many.frag # found chain 1tr9A in training set T0547 53 :HLIQKQIEN 1tr9A 40 :QQLLALNKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56402 # 1nw3A.53.68 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 53 :HLIQKQIEN 1nw3A 69 :ESMQRLCDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56403 # 1zuwA.53.47 read from T0547.t04.many.frag # found chain 1zuwA in training set T0547 53 :HLIQKQIEN 1zuwA 48 :EEVLQYTWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56404 # 1oe4A.53.5 read from T0547.t04.many.frag # found chain 1oe4A in template set T0547 53 :HLIQKQIEN 1oe4A 40 :DSFLKVELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56405 # 1jqnA.53.349 read from T0547.t04.many.frag # found chain 1jqnA in template set T0547 53 :HLIQKQIEN 1jqnA 350 :EELWEPLYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56406 # 1y0kA.53.7 read from T0547.t04.many.frag # found chain 1y0kA in training set T0547 53 :HLIQKQIEN 1y0kA 8 :RLLTRQAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56407 # 1j2zA.53.207 read from T0547.t04.many.frag # found chain 1j2zA in template set T0547 53 :HLIQKQIEN 1j2zA 208 :DFIYALYKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56408 # 2etdA.53.24 read from T0547.t04.many.frag # found chain 2etdA in template set T0547 53 :HLIQKQIEN 2etdA 47 :SQIQNQLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56409 # 2fn0A.53.175 read from T0547.t04.many.frag # found chain 2fn0A in template set T0547 53 :HLIQKQIEN 2fn0A 173 :EAYKQQVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56410 # 1b5l.53.4 read from T0547.t04.many.frag # found chain 1b5l in template set T0547 53 :HLIQKQIEN 1b5l 5 :RKLMLDARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56411 # 1s4bP.53.15 read from T0547.t04.many.frag # found chain 1s4bP in template set T0547 53 :HLIQKQIEN 1s4bP 31 :QQIEERTRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56412 # 1ycdA.53.18 read from T0547.t04.many.frag # found chain 1ycdA in training set Warning: unaligning (T0547)I59 (1ycdA)S25 because G (3-10) conformation "forbidden" or filtered. T0547 53 :HLIQKQ 1ycdA 19 :KVFSEK T0547 60 :EN 1ycdA 26 :SG Number of specific fragments extracted= 2 number of extra gaps= 1 total=56414 # 1j2rA.53.41 read from T0547.t04.many.frag # found chain 1j2rA in training set T0547 53 :HLIQKQIEN 1j2rA 42 :DEVVNRAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56415 # 1eyeA.53.28 read from T0547.t04.many.frag # found chain 1eyeA in template set T0547 53 :HLIQKQIEN 1eyeA 29 :DDAVKHGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56416 # 1c3cA.53.109 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 53 :HLIQKQIEN 1c3cA 111 :KILLESLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56417 # 1k0fA.53.129 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 53 :HLIQKQIEN 1k0fA 161 :REFTQRYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56418 # 1h70A.54.30 read from T0547.t04.many.frag # found chain 1h70A in training set T0547 54 :LIQKQIENI 1h70A 30 :KALEQHNAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56419 # 1k3sA.54.92 read from T0547.t04.many.frag # found chain 1k3sA in template set T0547 54 :LIQKQIENI 1k3sA 93 :EALTGFELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56420 # 1rcqA.54.11 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 54 :LIQKQIENI 1rcqA 12 :ALRHNYRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56421 # 1zybA.54.135 read from T0547.t04.many.frag # found chain 1zybA in template set T0547 54 :LIQKQIENI 1zybA 124 :IFRLNYMNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56422 # 1mgtA.54.34 read from T0547.t04.many.frag # found chain 1mgtA in training set T0547 54 :LIQKQIENI 1mgtA 35 :TLMKRIHDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56423 # 1ryoA.54.13 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 54 :LIQKQIENI 1ryoA 14 :HEATKCQSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56424 # 1nw3A.54.69 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 54 :LIQKQIENI 1nw3A 70 :SMQRLCDKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56425 # 2d0tA.54.197 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 54 :LIQKQIENI 2d0tA 195 :TLLKALLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56426 # 7odcA.54.46 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 54 :LIQKQIENI 7odcA 47 :DILKKHLRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=56427 # 1wdpA.54.33 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 54 :LIQKQIENI 1wdpA 34 :GLKEQLLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56428 # 1b5l.54.5 read from T0547.t04.many.frag # found chain 1b5l in template set T0547 54 :LIQKQIENI 1b5l 6 :KLMLDAREN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56429 # 1v4sA.54.18 read from T0547.t04.many.frag # found chain 1v4sA in template set T0547 54 :LIQKQIENI 1v4sA 29 :DLKKVMRRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=56430 # 1fsgA.54.53 read from T0547.t04.many.frag # found chain 1fsgA in training set T0547 54 :LIQKQIENI 1fsgA 51 :LVKDRVEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56431 # 1jqnA.54.350 read from T0547.t04.many.frag # found chain 1jqnA in template set T0547 54 :LIQKQIENI 1jqnA 351 :ELWEPLYAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=56432 # 1oe4A.54.6 read from T0547.t04.many.frag # found chain 1oe4A in template set T0547 54 :LIQKQIENI 1oe4A 41 :SFLKVELEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56433 # 2fn0A.54.176 read from T0547.t04.many.frag # found chain 2fn0A in template set T0547 54 :LIQKQIENI 2fn0A 174 :AYKQQVARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56434 # 1eyeA.54.29 read from T0547.t04.many.frag # found chain 1eyeA in template set T0547 54 :LIQKQIENI 1eyeA 30 :DAVKHGLAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=56435 # 1qv9A.54.47 read from T0547.t04.many.frag # found chain 1qv9A in training set T0547 54 :LIQKQIENI 1qv9A 48 :CVEAAVEMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56436 # 1c3cA.54.110 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 54 :LIQKQIENI 1c3cA 112 :ILLESLKEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56437 # 1o9rA.54.49 read from T0547.t04.many.frag # found chain 1o9rA in training set T0547 54 :LIQKQIENI 1o9rA 50 :AVHELLDTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56438 # 1onrA.54.105 read from T0547.t04.many.frag # found chain 1onrA in template set T0547 54 :LIQKQIENI 1onrA 107 :ASIAKAKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56439 # 1n5uA.54.37 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 54 :LIQKQIENI 1n5uA 38 :DHVKLVNEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56440 # 1k0fA.54.130 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 54 :LIQKQIENI 1k0fA 162 :EFTQRYQAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56441 # 1r5iD.54.49 read from T0547.t04.many.frag # found chain 1r5iD in template set T0547 54 :LIQKQIENI 1r5iD 47 :LFKLKVNQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56442 1sflA expands to /projects/compbio/data/pdb/1sfl.pdb.gz 1sflA:# 1sflA.54.47 read from T0547.t04.many.frag # adding 1sflA to template set # found chain 1sflA in template set T0547 54 :LIQKQIENI 1sflA 48 :QVAEMITKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56443 # 1o20A.54.54 read from T0547.t04.many.frag # found chain 1o20A in template set T0547 54 :LIQKQIENI 1o20A 43 :EILEANRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=56444 # 1y0kA.54.8 read from T0547.t04.many.frag # found chain 1y0kA in training set T0547 54 :LIQKQIENI 1y0kA 9 :LLTRQAEQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56445 # 1eokA.54.66 read from T0547.t04.many.frag # found chain 1eokA in training set T0547 54 :LIQKQIENI 1eokA 67 :DLDTQIRSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56446 # 1tr9A.54.41 read from T0547.t04.many.frag # found chain 1tr9A in training set T0547 54 :LIQKQIENI 1tr9A 41 :QLLALNKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56447 # 1v96A.54.74 read from T0547.t04.many.frag # found chain 1v96A in training set T0547 54 :LIQKQIENI 1v96A 75 :DIAIKAAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56448 # 1h70A.55.31 read from T0547.t04.many.frag # found chain 1h70A in training set T0547 55 :IQKQIENIY 1h70A 31 :ALEQHNAYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56449 # 1k3sA.55.93 read from T0547.t04.many.frag # found chain 1k3sA in template set T0547 55 :IQKQIENIY 1k3sA 94 :ALTGFELFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56450 # 1zybA.55.136 read from T0547.t04.many.frag # found chain 1zybA in template set T0547 55 :IQKQIENIY 1zybA 125 :FRLNYMNIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56451 # 1nw3A.55.70 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 55 :IQKQIENIY 1nw3A 71 :MQRLCDKYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56452 # 1b5l.55.6 read from T0547.t04.many.frag # found chain 1b5l in template set T0547 55 :IQKQIENIY 1b5l 7 :LMLDARENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56453 # 1mgtA.55.35 read from T0547.t04.many.frag # found chain 1mgtA in training set T0547 55 :IQKQIENIY 1mgtA 36 :LMKRIHDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56454 # 1ryoA.55.14 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 55 :IQKQIENIY 1ryoA 15 :EATKCQSFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56455 # 1k0fA.55.131 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 55 :IQKQIENIY 1k0fA 163 :FTQRYQAYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56456 # 1rcqA.55.12 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 55 :IQKQIENIY 1rcqA 13 :LRHNYRLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56457 # 2d0tA.55.198 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 55 :IQKQIENIY 2d0tA 196 :LLKALLEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56458 # 1qv9A.55.48 read from T0547.t04.many.frag # found chain 1qv9A in training set T0547 55 :IQKQIENIY 1qv9A 49 :VEAAVEMAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56459 # 2fn0A.55.177 read from T0547.t04.many.frag # found chain 2fn0A in template set T0547 55 :IQKQIENIY 2fn0A 175 :YKQQVARAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56460 # 1o9rA.55.50 read from T0547.t04.many.frag # found chain 1o9rA in training set T0547 55 :IQKQIENIY 1o9rA 51 :VHELLDTFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56461 # 1fsgA.55.54 read from T0547.t04.many.frag # found chain 1fsgA in training set T0547 55 :IQKQIENIY 1fsgA 52 :VKDRVEKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56462 # 1c3cA.55.111 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 55 :IQKQIENIY 1c3cA 113 :LLESLKEFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=56463 # 7odcA.55.47 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 55 :IQKQIENIY 7odcA 48 :ILKKHLRWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56464 # 1oe4A.55.7 read from T0547.t04.many.frag # found chain 1oe4A in template set T0547 55 :IQKQIENIY 1oe4A 42 :FLKVELELN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56465 # 1r5iD.55.50 read from T0547.t04.many.frag # found chain 1r5iD in template set T0547 55 :IQKQIENIY 1r5iD 48 :FKLKVNQFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56466 # 1v4sA.55.19 read from T0547.t04.many.frag # found chain 1v4sA in template set T0547 55 :IQKQIENIY 1v4sA 30 :LKKVMRRMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56467 # 1wdpA.55.34 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 55 :IQKQIENIY 1wdpA 35 :LKEQLLQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56468 # 1eokA.55.67 read from T0547.t04.many.frag # found chain 1eokA in training set T0547 55 :IQKQIENIY 1eokA 68 :LDTQIRSLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56469 # 1y0kA.55.9 read from T0547.t04.many.frag # found chain 1y0kA in training set T0547 55 :IQKQIENIY 1y0kA 10 :LTRQAEQAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56470 # 1n5uA.55.38 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 55 :IQKQIENIY 1n5uA 39 :HVKLVNEVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56471 # 1onrA.55.106 read from T0547.t04.many.frag # found chain 1onrA in template set T0547 55 :IQKQIENIY 1onrA 108 :SIAKAKRLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56472 # 2etdA.55.26 read from T0547.t04.many.frag # found chain 2etdA in template set T0547 55 :IQKQIENIY 2etdA 49 :IQNQLQRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56473 # 1in0A.55.14 read from T0547.t04.many.frag # found chain 1in0A in template set T0547 55 :IQKQIENIY 1in0A 15 :VRNAVENAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56474 # 1nogA.55.27 read from T0547.t04.many.frag # found chain 1nogA in training set T0547 55 :IQKQIENIY 1nogA 28 :VQGTIDELN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56475 # 1s0pA.55.26 read from T0547.t04.many.frag # found chain 1s0pA in template set T0547 55 :IQKQIENIY 1s0pA 77 :VGNQVEQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56476 # 1tr9A.55.42 read from T0547.t04.many.frag # found chain 1tr9A in training set T0547 55 :IQKQIENIY 1tr9A 42 :LLALNKAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56477 # 1ct5A.55.13 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 55 :IQKQIENIY 1ct5A 15 :LIAQYESVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56478 # 1h70A.56.32 read from T0547.t04.many.frag # found chain 1h70A in training set T0547 56 :QKQIENIYG 1h70A 32 :LEQHNAYIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56479 # 1k3sA.56.94 read from T0547.t04.many.frag # found chain 1k3sA in template set T0547 56 :QKQIENIYG 1k3sA 95 :LTGFELFIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56480 # 1b5l.56.7 read from T0547.t04.many.frag # found chain 1b5l in template set T0547 56 :QKQIENIYG 1b5l 8 :MLDARENLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56481 # 1k0fA.56.132 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 56 :QKQIENIYG 1k0fA 164 :TQRYQAYQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56482 # 1zybA.56.137 read from T0547.t04.many.frag # found chain 1zybA in template set T0547 56 :QKQIENIYG 1zybA 126 :RLNYMNIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56483 # 1nw3A.56.71 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 56 :QKQIENIYG 1nw3A 72 :QRLCDKYNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56484 # 1ryoA.56.15 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 56 :QKQIENIYG 1ryoA 16 :ATKCQSFRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56485 # 2d0tA.56.199 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 56 :QKQIENIYG 2d0tA 197 :LKALLEIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56486 # 7odcA.56.48 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 56 :QKQIENIYG 7odcA 49 :LKKHLRWLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56487 # 1rcqA.56.13 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 56 :QKQIENIYG 1rcqA 14 :RHNYRLARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56488 # 2fn0A.56.178 read from T0547.t04.many.frag # found chain 2fn0A in template set T0547 56 :QKQIENIYG 2fn0A 176 :KQQVARAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56489 # 1o9rA.56.51 read from T0547.t04.many.frag # found chain 1o9rA in training set T0547 56 :QKQIENIYG 1o9rA 52 :HELLDTFRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56490 # 1ct5A.56.14 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 56 :QKQIENIYG 1ct5A 16 :IAQYESVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56491 # 1n5uA.56.39 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 56 :QKQIENIYG 1n5uA 40 :VKLVNEVTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56492 # 1v4sA.56.20 read from T0547.t04.many.frag # found chain 1v4sA in template set T0547 56 :QKQIENIYG 1v4sA 31 :KKVMRRMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56493 # 1r5iD.56.51 read from T0547.t04.many.frag # found chain 1r5iD in template set T0547 56 :QKQIENIYG 1r5iD 49 :KLKVNQFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56494 # 1qv9A.56.49 read from T0547.t04.many.frag # found chain 1qv9A in training set T0547 56 :QKQIENIYG 1qv9A 50 :EAAVEMALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56495 # 1mgtA.56.36 read from T0547.t04.many.frag # found chain 1mgtA in training set T0547 56 :QKQIENIYG 1mgtA 37 :MKRIHDLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56496 # 1c3cA.56.112 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 56 :QKQIENIYG 1c3cA 114 :LESLKEFCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56497 # 1oe4A.56.8 read from T0547.t04.many.frag # found chain 1oe4A in template set T0547 56 :QKQIENIYG 1oe4A 43 :LKVELELNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56498 # 1nogA.56.28 read from T0547.t04.many.frag # found chain 1nogA in training set T0547 56 :QKQIENIYG 1nogA 29 :QGTIDELNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56499 # 1onrA.56.107 read from T0547.t04.many.frag # found chain 1onrA in template set T0547 56 :QKQIENIYG 1onrA 109 :IAKAKRLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56500 # 1fsgA.56.55 read from T0547.t04.many.frag # found chain 1fsgA in training set T0547 56 :QKQIENIYG 1fsgA 53 :KDRVEKLAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56501 # 1eyeA.56.31 read from T0547.t04.many.frag # found chain 1eyeA in template set T0547 56 :QKQIENIYG 1eyeA 32 :VKHGLAMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56502 # 1y0kA.56.10 read from T0547.t04.many.frag # found chain 1y0kA in training set T0547 56 :QKQIENIYG 1y0kA 11 :TRQAEQAND Number of specific fragments extracted= 1 number of extra gaps= 0 total=56503 # 1eokA.56.68 read from T0547.t04.many.frag # found chain 1eokA in training set T0547 56 :QKQIENIYG 1eokA 69 :DTQIRSLQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56504 # 2etdA.56.27 read from T0547.t04.many.frag # found chain 2etdA in template set T0547 56 :QKQIENIYG 2etdA 50 :QNQLQRRAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56505 # 1r0dA.56.18 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 56 :QKQIENIYG 1r0dA 784 :DKEMAATSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56506 # 1s0pA.56.27 read from T0547.t04.many.frag # found chain 1s0pA in template set T0547 56 :QKQIENIYG 1s0pA 78 :GNQVEQLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56507 # 1vi6A.56.52 read from T0547.t04.many.frag # found chain 1vi6A in template set T0547 56 :QKQIENIYG 1vi6A 52 :DERIRVAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56508 # 1h70A.57.33 read from T0547.t04.many.frag # found chain 1h70A in training set T0547 57 :KQIENIYGN 1h70A 33 :EQHNAYIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56509 # 1k3sA.57.95 read from T0547.t04.many.frag # found chain 1k3sA in template set T0547 57 :KQIENIYGN 1k3sA 96 :TGFELFISN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56510 # 1b5l.57.8 read from T0547.t04.many.frag # found chain 1b5l in template set T0547 57 :KQIENIYGN 1b5l 9 :LDARENLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56511 # 1nw3A.57.72 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 57 :KQIENIYGN 1nw3A 73 :RLCDKYNRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56512 # 1zybA.57.138 read from T0547.t04.many.frag # found chain 1zybA in template set T0547 57 :KQIENIYGN 1zybA 127 :LNYMNIVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56513 # 1k0fA.57.133 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 57 :KQIENIYGN 1k0fA 165 :QRYQAYQQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56514 # 7odcA.57.49 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 57 :KQIENIYGN 7odcA 50 :KKHLRWLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56515 # 1ryoA.57.16 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 57 :KQIENIYGN 1ryoA 17 :TKCQSFRDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56516 # 1rcqA.57.14 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 57 :KQIENIYGN 1rcqA 15 :HNYRLAREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56517 # 1n5uA.57.40 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 57 :KQIENIYGN 1n5uA 41 :KLVNEVTEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56518 # 2d0tA.57.200 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 57 :KQIENIYGN 2d0tA 198 :KALLEIASC Number of specific fragments extracted= 1 number of extra gaps= 0 total=56519 # 1o9rA.57.52 read from T0547.t04.many.frag # found chain 1o9rA in training set T0547 57 :KQIENIYGN 1o9rA 53 :ELLDTFRTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56520 # 2fn0A.57.179 read from T0547.t04.many.frag # found chain 2fn0A in template set T0547 57 :KQIENIYGN 2fn0A 177 :QQVARAVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56521 # 1v4sA.57.21 read from T0547.t04.many.frag # found chain 1v4sA in template set T0547 57 :KQIENIYGN 1v4sA 32 :KVMRRMQKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56522 # 1r0dA.57.19 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 57 :KQIENIYGN 1r0dA 785 :KEMAATSAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56523 # 1qv9A.57.50 read from T0547.t04.many.frag # found chain 1qv9A in training set T0547 57 :KQIENIYGN 1qv9A 51 :AAVEMALDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56524 # 1c3cA.57.113 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 57 :KQIENIYGN 1c3cA 115 :ESLKEFCDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56525 # 1r5iD.57.52 read from T0547.t04.many.frag # found chain 1r5iD in template set T0547 57 :KQIENIYGN 1r5iD 50 :LKVNQFYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56526 # 1nogA.57.29 read from T0547.t04.many.frag # found chain 1nogA in training set T0547 57 :KQIENIYGN 1nogA 30 :GTIDELNSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56527 # 1p1jA.57.217 read from T0547.t04.many.frag # found chain 1p1jA in training set T0547 57 :KQIENIYGN 1p1jA 218 :THLQRIRRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56528 # 2esnA.57.71 read from T0547.t04.many.frag # found chain 2esnA in template set T0547 57 :KQIENIYGN 2esnA 70 :HLAAAVAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56529 # 1ct5A.57.15 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 57 :KQIENIYGN 1ct5A 17 :AQYESVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56530 # 1in0A.57.16 read from T0547.t04.many.frag # found chain 1in0A in template set T0547 57 :KQIENIYGN 1in0A 17 :NAVENANRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56531 # 1oe4A.57.9 read from T0547.t04.many.frag # found chain 1oe4A in template set T0547 57 :KQIENIYGN 1oe4A 44 :KVELELNLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56532 # 1y0kA.57.11 read from T0547.t04.many.frag # found chain 1y0kA in training set T0547 57 :KQIENIYGN 1y0kA 12 :RQAEQANDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56533 # 1s0pA.57.28 read from T0547.t04.many.frag # found chain 1s0pA in template set T0547 57 :KQIENIYGN 1s0pA 79 :NQVEQLVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56534 # 1vi6A.57.53 read from T0547.t04.many.frag # found chain 1vi6A in template set T0547 57 :KQIENIYGN 1vi6A 53 :ERIRVAAKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56535 # 2etdA.57.28 read from T0547.t04.many.frag # found chain 2etdA in template set T0547 57 :KQIENIYGN 2etdA 51 :NQLQRRADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56536 # 1xfiA.57.125 read from T0547.t04.many.frag # found chain 1xfiA in training set T0547 57 :KQIENIYGN 1xfiA 126 :EENAKAISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56537 # 1mgtA.57.37 read from T0547.t04.many.frag # found chain 1mgtA in training set T0547 57 :KQIENIYGN 1mgtA 38 :KRIHDLAEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56538 # 1b5l.58.9 read from T0547.t04.many.frag # found chain 1b5l in template set T0547 58 :QIENIYGNF 1b5l 10 :DARENLKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56539 # 1k3sA.58.96 read from T0547.t04.many.frag # found chain 1k3sA in template set T0547 58 :QIENIYGNF 1k3sA 97 :GFELFISNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56540 # 1h70A.58.34 read from T0547.t04.many.frag # found chain 1h70A in training set T0547 58 :QIENIYGNF 1h70A 34 :QHNAYIRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56541 # 1k0fA.58.134 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 58 :QIENIYGNF 1k0fA 166 :RYQAYQQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56542 # 1n5uA.58.41 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 58 :QIENIYGNF 1n5uA 42 :LVNEVTEFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56543 # 1o9rA.58.53 read from T0547.t04.many.frag # found chain 1o9rA in training set T0547 58 :QIENIYGNF 1o9rA 54 :LLDTFRTQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56544 # 1c3cA.58.114 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 58 :QIENIYGNF 1c3cA 116 :SLKEFCDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56545 # 1r0dA.58.20 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 58 :QIENIYGNF 1r0dA 786 :EMAATSAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56546 # 2d0tA.58.201 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 58 :QIENIYGNF 2d0tA 199 :ALLEIASCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56547 # 1v4sA.58.22 read from T0547.t04.many.frag # found chain 1v4sA in template set T0547 58 :QIENIYGNF 1v4sA 33 :VMRRMQKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=56548 # 1nogA.58.30 read from T0547.t04.many.frag # found chain 1nogA in training set T0547 58 :QIENIYGNF 1nogA 31 :TIDELNSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56549 # 7odcA.58.50 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 58 :QIENIYGNF 7odcA 51 :KHLRWLKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56550 # 1r5iD.58.53 read from T0547.t04.many.frag # found chain 1r5iD in template set T0547 58 :QIENIYGNF 1r5iD 51 :KVNQFYRHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56551 # 1nw3A.58.73 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 58 :QIENIYGNF 1nw3A 74 :LCDKYNRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56552 # 2fn0A.58.180 read from T0547.t04.many.frag # found chain 2fn0A in template set T0547 58 :QIENIYGNF 2fn0A 178 :QVARAVAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56553 # 1xfiA.58.126 read from T0547.t04.many.frag # found chain 1xfiA in training set T0547 58 :QIENIYGNF 1xfiA 127 :ENAKAISLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56554 1alu expands to /projects/compbio/data/pdb/1alu.pdb.gz 1alu:Warning: there is no chain 1alu will retry with 1aluA Skipped atom 61, because occupancy 0.500 <= existing 0.500 in 1alu Skipped atom 63, because occupancy 0.500 <= existing 0.500 in 1alu Skipped atom 65, because occupancy 0.500 <= existing 0.500 in 1alu Skipped atom 67, because occupancy 0.500 <= existing 0.500 in 1alu Skipped atom 99, because occupancy 0.500 <= existing 0.500 in 1alu Skipped atom 101, because occupancy 0.500 <= existing 0.500 in 1alu Skipped atom 103, because occupancy 0.500 <= existing 0.500 in 1alu Skipped atom 105, because occupancy 0.500 <= existing 0.500 in 1alu Skipped atom 107, because occupancy 0.500 <= existing 0.500 in 1alu Skipped atom 109, because occupancy 0.500 <= existing 0.500 in 1alu Skipped atom 111, because occupancy 0.500 <= existing 0.500 in 1alu Skipped atom 723, because occupancy 0.500 <= existing 0.500 in 1alu Skipped atom 725, because occupancy 0.500 <= existing 0.500 in 1alu Skipped atom 727, because occupancy 0.500 <= existing 0.500 in 1alu Skipped atom 729, because occupancy 0.500 <= existing 0.500 in 1alu # 1alu.58.29 read from T0547.t04.many.frag # adding 1alu to template set # found chain 1alu in template set T0547 58 :QIENIYGNF 1alu 28 :QIRYILDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56555 # 1pprM.58.5 read from T0547.t04.many.frag # found chain 1pprM in template set T0547 58 :QIENIYGNF 1pprM 6 :AAKKLGDAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56556 # 2esnA.58.72 read from T0547.t04.many.frag # found chain 2esnA in template set T0547 58 :QIENIYGNF 2esnA 71 :LAAAVAAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56557 # 1aep.58.9 read from T0547.t04.many.frag # found chain 1aep in template set T0547 58 :QIENIYGNF 1aep 10 :AVQQLNHTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56558 # 1qv9A.58.51 read from T0547.t04.many.frag # found chain 1qv9A in training set T0547 58 :QIENIYGNF 1qv9A 52 :AVEMALDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56559 # 1ct5A.58.16 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 58 :QIENIYGNF 1ct5A 18 :QYESVREVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56560 # 1p1jA.58.218 read from T0547.t04.many.frag # found chain 1p1jA in training set T0547 58 :QIENIYGNF 1p1jA 219 :HLQRIRRDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56561 # 1u7gA.58.46 read from T0547.t04.many.frag # found chain 1u7gA in training set T0547 58 :QIENIYGNF 1u7gA 47 :QVTVTFALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56562 # 1ryoA.58.17 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 58 :QIENIYGNF 1ryoA 18 :KCQSFRDHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=56563 # 1kaeA.58.86 read from T0547.t04.many.frag # found chain 1kaeA in training set T0547 58 :QIENIYGNF 1kaeA 87 :AMAVAVKNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56564 # 1y0kA.58.12 read from T0547.t04.many.frag # found chain 1y0kA in training set T0547 58 :QIENIYGNF 1y0kA 13 :QAEQANDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56565 # 1s0pA.58.29 read from T0547.t04.many.frag # found chain 1s0pA in template set T0547 58 :QIENIYGNF 1s0pA 80 :QVEQLVKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56566 # 1zybA.58.139 read from T0547.t04.many.frag # found chain 1zybA in template set T0547 58 :QIENIYGNF 1zybA 128 :NYMNIVSNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56567 # 1of8A.58.86 read from T0547.t04.many.frag # found chain 1of8A in training set T0547 58 :QIENIYGNF 1of8A 87 :YALRLKKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56568 # 1b5l.59.10 read from T0547.t04.many.frag # found chain 1b5l in template set T0547 59 :IENIYGNFN 1b5l 11 :ARENLKLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56569 # 1k3sA.59.97 read from T0547.t04.many.frag # found chain 1k3sA in template set T0547 59 :IENIYGNFN 1k3sA 98 :FELFISNVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56570 # 1nw3A.59.74 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 59 :IENIYGNFN 1nw3A 75 :CDKYNRAID Number of specific fragments extracted= 1 number of extra gaps= 0 total=56571 # 1h70A.59.35 read from T0547.t04.many.frag # found chain 1h70A in training set T0547 59 :IENIYGNFN 1h70A 35 :HNAYIRALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56572 # 2d0tA.59.202 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 59 :IENIYGNFN 2d0tA 200 :LLEIASCLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56573 # 1n5uA.59.42 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 59 :IENIYGNFN 1n5uA 43 :VNEVTEFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56574 # 1k0fA.59.135 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 59 :IENIYGNFN 1k0fA 167 :YQAYQQQLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56575 # 1r0dA.59.21 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 59 :IENIYGNFN 1r0dA 787 :MAATSAAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56576 # 1v4sA.59.23 read from T0547.t04.many.frag # found chain 1v4sA in template set T0547 59 :IENIYGNFN 1v4sA 34 :MRRMQKEMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56577 # 1r5iD.59.54 read from T0547.t04.many.frag # found chain 1r5iD in template set T0547 59 :IENIYGNFN 1r5iD 52 :VNQFYRHAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56578 # 1c3cA.59.115 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 59 :IENIYGNFN 1c3cA 117 :LKEFCDVLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=56579 # 1o9rA.59.54 read from T0547.t04.many.frag # found chain 1o9rA in training set T0547 59 :IENIYGNFN 1o9rA 55 :LDTFRTQLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56580 # 1p1jA.59.219 read from T0547.t04.many.frag # found chain 1p1jA in training set T0547 59 :IENIYGNFN 1p1jA 220 :LQRIRRDIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56581 # 2esnA.59.73 read from T0547.t04.many.frag # found chain 2esnA in template set T0547 59 :IENIYGNFN 2esnA 72 :AAAVAAALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56582 # 1s0pA.59.30 read from T0547.t04.many.frag # found chain 1s0pA in template set T0547 59 :IENIYGNFN 1s0pA 81 :VEQLVKAID Number of specific fragments extracted= 1 number of extra gaps= 0 total=56583 # 1xfiA.59.127 read from T0547.t04.many.frag # found chain 1xfiA in training set T0547 59 :IENIYGNFN 1xfiA 128 :NAKAISLFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=56584 # 2fn0A.59.181 read from T0547.t04.many.frag # found chain 2fn0A in template set T0547 59 :IENIYGNFN 2fn0A 179 :VARAVAEIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56585 # 1nogA.59.31 read from T0547.t04.many.frag # found chain 1nogA in training set T0547 59 :IENIYGNFN 1nogA 32 :IDELNSFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56586 # 1qv9A.59.52 read from T0547.t04.many.frag # found chain 1qv9A in training set T0547 59 :IENIYGNFN 1qv9A 53 :VEMALDIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56587 # 1kaeA.59.87 read from T0547.t04.many.frag # found chain 1kaeA in training set T0547 59 :IENIYGNFN 1kaeA 88 :MAVAVKNIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56588 # 7odcA.59.51 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 59 :IENIYGNFN 7odcA 52 :HLRWLKALP Number of specific fragments extracted= 1 number of extra gaps= 0 total=56589 # 1ryoA.59.18 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 59 :IENIYGNFN 1ryoA 19 :CQSFRDHMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56590 # 1alu.59.30 read from T0547.t04.many.frag # found chain 1alu in template set T0547 59 :IENIYGNFN 1alu 29 :IRYILDGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56591 # 2a1rA.59.11 read from T0547.t04.many.frag # found chain 2a1rA in template set T0547 59 :IENIYGNFN 2a1rA 12 :LHKVYQAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56592 # 1u7gA.59.47 read from T0547.t04.many.frag # found chain 1u7gA in training set T0547 59 :IENIYGNFN 1u7gA 48 :VTVTFALVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=56593 # 1y0kA.59.13 read from T0547.t04.many.frag # found chain 1y0kA in training set T0547 59 :IENIYGNFN 1y0kA 14 :AEQANDFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56594 # 1of8A.59.87 read from T0547.t04.many.frag # found chain 1of8A in training set T0547 59 :IENIYGNFN 1of8A 88 :ALRLKKLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56595 # 1k87A.59.300 read from T0547.t04.many.frag # found chain 1k87A in template set T0547 59 :IENIYGNFN 1k87A 301 :MVSYQQAIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56596 # 1ct5A.59.17 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 59 :IENIYGNFN 1ct5A 19 :YESVREVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56597 # 1pprM.59.6 read from T0547.t04.many.frag # found chain 1pprM in template set T0547 59 :IENIYGNFN 1pprM 7 :AKKLGDASY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56598 # 1nw3A.60.75 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 60 :ENIYGNFNK 1nw3A 76 :DKYNRAIDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56599 # 1b5l.60.11 read from T0547.t04.many.frag # found chain 1b5l in template set T0547 60 :ENIYGNFNK 1b5l 12 :RENLKLLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56600 # 1n5uA.60.43 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 60 :ENIYGNFNK 1n5uA 44 :NEVTEFAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56601 # 1r0dA.60.22 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 60 :ENIYGNFNK 1r0dA 788 :AATSAAIED Number of specific fragments extracted= 1 number of extra gaps= 0 total=56602 # 1v4sA.60.24 read from T0547.t04.many.frag # found chain 1v4sA in template set T0547 60 :ENIYGNFNK 1v4sA 35 :RRMQKEMDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56603 # 2d0tA.60.203 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 60 :ENIYGNFNK 2d0tA 201 :LEIASCLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56604 # 1k3sA.60.98 read from T0547.t04.many.frag # found chain 1k3sA in template set T0547 60 :ENIYGNFNK 1k3sA 99 :ELFISNVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56605 # 2esnA.60.74 read from T0547.t04.many.frag # found chain 2esnA in template set T0547 60 :ENIYGNFNK 2esnA 73 :AAVAAALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56606 # 1o9rA.60.55 read from T0547.t04.many.frag # found chain 1o9rA in training set T0547 60 :ENIYGNFNK 1o9rA 56 :DTFRTQLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56607 # 1k0fA.60.136 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 60 :ENIYGNFNK 1k0fA 168 :QAYQQQLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56608 # 1ryoA.60.19 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 60 :ENIYGNFNK 1ryoA 20 :QSFRDHMKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56609 # 1k87A.60.301 read from T0547.t04.many.frag # found chain 1k87A in template set T0547 60 :ENIYGNFNK 1k87A 302 :VSYQQAIHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56610 # 1h70A.60.36 read from T0547.t04.many.frag # found chain 1h70A in training set T0547 60 :ENIYGNFNK 1h70A 36 :NAYIRALQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56611 # 1p1jA.60.220 read from T0547.t04.many.frag # found chain 1p1jA in training set T0547 60 :ENIYGNFNK 1p1jA 221 :QRIRRDIQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56612 # 1xfiA.60.128 read from T0547.t04.many.frag # found chain 1xfiA in training set Warning: unaligning (T0547)N65 (1xfiA)L134 because G (3-10) conformation "forbidden" or filtered. T0547 60 :ENIYG 1xfiA 129 :AKAIS T0547 66 :FNK 1xfiA 135 :FPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=56614 # 1t92A.60.16 read from T0547.t04.many.frag # found chain 1t92A in training set T0547 60 :ENIYGNFNK 1t92A 41 :VALEGALDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=56615 # 1alu.60.31 read from T0547.t04.many.frag # found chain 1alu in template set T0547 60 :ENIYGNFNK 1alu 30 :RYILDGISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56616 # 1qv9A.60.53 read from T0547.t04.many.frag # found chain 1qv9A in training set T0547 60 :ENIYGNFNK 1qv9A 54 :EMALDIAED Number of specific fragments extracted= 1 number of extra gaps= 0 total=56617 # 1kaeA.60.88 read from T0547.t04.many.frag # found chain 1kaeA in training set T0547 60 :ENIYGNFNK 1kaeA 89 :AVAVKNIET Number of specific fragments extracted= 1 number of extra gaps= 0 total=56618 # 1vdkA.60.164 read from T0547.t04.many.frag # found chain 1vdkA in training set T0547 60 :ENIYGNFNK 1vdkA 165 :EGLIRTFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56619 # 1ie9A.60.15 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 60 :ENIYGNFNK 1ie9A 133 :AILLDAHHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56620 # 1aep.60.11 read from T0547.t04.many.frag # found chain 1aep in template set T0547 60 :ENIYGNFNK 1aep 12 :QQLNHTIVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56621 # 1s0pA.60.31 read from T0547.t04.many.frag # found chain 1s0pA in template set T0547 60 :ENIYGNFNK 1s0pA 82 :EQLVKAIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56622 # 1c3cA.60.116 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 60 :ENIYGNFNK 1c3cA 118 :KEFCDVLWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56623 # 1h6gA.60.44 read from T0547.t04.many.frag # found chain 1h6gA in template set T0547 60 :ENIYGNFNK 1h6gA 421 :QVFREHANK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56624 # 1ct5A.60.18 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 60 :ENIYGNFNK 1ct5A 20 :ESVREVVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56625 # 1lvaA.60.68 read from T0547.t04.many.frag # found chain 1lvaA in template set T0547 60 :ENIYGNFNK 1lvaA 445 :QAVTRALEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56626 # 1of8A.60.88 read from T0547.t04.many.frag # found chain 1of8A in training set T0547 60 :ENIYGNFNK 1of8A 89 :LRLKKLSDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56627 # 1u7gA.60.48 read from T0547.t04.many.frag # found chain 1u7gA in training set T0547 60 :ENIYGNFNK 1u7gA 49 :TVTFALVCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56628 # 2fn0A.60.182 read from T0547.t04.many.frag # found chain 2fn0A in template set T0547 60 :ENIYGNFNK 2fn0A 180 :ARAVAEIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56629 # 1b5l.61.12 read from T0547.t04.many.frag # found chain 1b5l in template set T0547 61 :NIYGNFNKA 1b5l 13 :ENLKLLDRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=56630 # 1nw3A.61.76 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 61 :NIYGNFNKA 1nw3A 77 :KYNRAIDSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56631 # 2d0tA.61.204 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 61 :NIYGNFNKA 2d0tA 202 :EIASCLEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56632 # 1n5uA.61.44 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 61 :NIYGNFNKA 1n5uA 45 :EVTEFAKTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=56633 # 1r0dA.61.23 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 61 :NIYGNFNKA 1r0dA 789 :ATSAAIEDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56634 # 1p1jA.61.221 read from T0547.t04.many.frag # found chain 1p1jA in training set T0547 61 :NIYGNFNKA 1p1jA 222 :RIRRDIQNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56635 # 1k3sA.61.99 read from T0547.t04.many.frag # found chain 1k3sA in template set T0547 61 :NIYGNFNKA 1k3sA 100 :LFISNVKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56636 # 1v4sA.61.25 read from T0547.t04.many.frag # found chain 1v4sA in template set T0547 61 :NIYGNFNKA 1v4sA 36 :RMQKEMDRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56637 # 2esnA.61.75 read from T0547.t04.many.frag # found chain 2esnA in template set T0547 61 :NIYGNFNKA 2esnA 74 :AVAAALRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56638 # 1k0fA.61.137 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 61 :NIYGNFNKA 1k0fA 169 :AYQQQLDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56639 # 1kaeA.61.89 read from T0547.t04.many.frag # found chain 1kaeA in training set T0547 61 :NIYGNFNKA 1kaeA 90 :VAVKNIETF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56640 # 1o9rA.61.56 read from T0547.t04.many.frag # found chain 1o9rA in training set T0547 61 :NIYGNFNKA 1o9rA 57 :TFRTQLDNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56641 # 1xfiA.61.129 read from T0547.t04.many.frag # found chain 1xfiA in training set T0547 61 :NIYGNFNKA 1xfiA 130 :KAISLFPQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56642 # 1mj5A.61.83 read from T0547.t04.many.frag # found chain 1mj5A in training set T0547 61 :NIYGNFNKA 1mj5A 84 :EHRDYLDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56643 # 1alu.61.32 read from T0547.t04.many.frag # found chain 1alu in template set T0547 61 :NIYGNFNKA 1alu 31 :YILDGISAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56644 # 1ryoA.61.20 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 61 :NIYGNFNKA 1ryoA 21 :SFRDHMKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56645 # 1qv9A.61.54 read from T0547.t04.many.frag # found chain 1qv9A in training set T0547 61 :NIYGNFNKA 1qv9A 55 :MALDIAEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56646 # 1k87A.61.302 read from T0547.t04.many.frag # found chain 1k87A in template set T0547 61 :NIYGNFNKA 1k87A 303 :SYQQAIHAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56647 # 1c3cA.61.117 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 61 :NIYGNFNKA 1c3cA 119 :EFCDVLWEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56648 # 1t92A.61.17 read from T0547.t04.many.frag # found chain 1t92A in training set T0547 61 :NIYGNFNKA 1t92A 42 :ALEGALDMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56649 # 2bryA.61.32 read from T0547.t04.many.frag # found chain 2bryA in training set T0547 61 :NIYGNFNKA 2bryA 25 :DVLSSFQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56650 # 1aep.61.12 read from T0547.t04.many.frag # found chain 1aep in template set T0547 61 :NIYGNFNKA 1aep 13 :QLNHTIVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56651 # 1ct5A.61.19 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 61 :NIYGNFNKA 1ct5A 21 :SVREVVNAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56652 # 1h6kA.61.87 read from T0547.t04.many.frag # found chain 1h6kA in template set T0547 61 :NIYGNFNKA 1h6kA 107 :AMIRQLKES Number of specific fragments extracted= 1 number of extra gaps= 0 total=56653 # 2cx6A.61.67 read from T0547.t04.many.frag # found chain 2cx6A in template set T0547 61 :NIYGNFNKA 2cx6A 68 :ALILLFDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56654 # 1mswD.61.79 read from T0547.t04.many.frag # found chain 1mswD in template set T0547 61 :NIYGNFNKA 1mswD 80 :KMIARINDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=56655 # 1h16A.61.224 read from T0547.t04.many.frag # found chain 1h16A in training set T0547 61 :NIYGNFNKA 1h16A 225 :EQHRALGQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=56656 # 1ie9A.61.16 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 61 :NIYGNFNKA 1ie9A 134 :ILLDAHHKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56657 # 1sg6A.61.53 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 61 :NIYGNFNKA 1sg6A 54 :SFEEAFRKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56658 # 1s0pA.61.32 read from T0547.t04.many.frag # found chain 1s0pA in template set T0547 61 :NIYGNFNKA 1s0pA 83 :QLVKAIDAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56659 # 1nw3A.62.77 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 62 :IYGNFNKAR 1nw3A 78 :YNRAIDSIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56660 # 1b5l.62.13 read from T0547.t04.many.frag # found chain 1b5l in template set T0547 62 :IYGNFNKAR 1b5l 14 :NLKLLDRMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56661 # 2d0tA.62.205 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 62 :IYGNFNKAR 2d0tA 203 :IASCLEKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56662 # 1r0dA.62.24 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 62 :IYGNFNKAR 1r0dA 790 :TSAAIEDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56663 # 1n5uA.62.45 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 62 :IYGNFNKAR 1n5uA 46 :VTEFAKTCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56664 # 1mj5A.62.84 read from T0547.t04.many.frag # found chain 1mj5A in training set T0547 62 :IYGNFNKAR 1mj5A 85 :HRDYLDALW Number of specific fragments extracted= 1 number of extra gaps= 0 total=56665 # 2cx6A.62.68 read from T0547.t04.many.frag # found chain 2cx6A in template set T0547 62 :IYGNFNKAR 2cx6A 69 :LILLFDEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56666 # 1k87A.62.303 read from T0547.t04.many.frag # found chain 1k87A in template set T0547 62 :IYGNFNKAR 1k87A 304 :YQQAIHAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56667 # 1t92A.62.18 read from T0547.t04.many.frag # found chain 1t92A in training set T0547 62 :IYGNFNKAR 1t92A 43 :LEGALDMYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56668 # 1p1jA.62.222 read from T0547.t04.many.frag # found chain 1p1jA in training set T0547 62 :IYGNFNKAR 1p1jA 223 :IRRDIQNFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56669 # 1v4sA.62.26 read from T0547.t04.many.frag # found chain 1v4sA in template set T0547 62 :IYGNFNKAR 1v4sA 37 :MQKEMDRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56670 # 1sg6A.62.54 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 62 :IYGNFNKAR 1sg6A 55 :FEEAFRKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56671 # 1u4qA.62.14 read from T0547.t04.many.frag # found chain 1u4qA in template set T0547 62 :IYGNFNKAR 1u4qA 1675 :FDFWLSEVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56672 # 1vdkA.62.166 read from T0547.t04.many.frag # found chain 1vdkA in training set T0547 62 :IYGNFNKAR 1vdkA 167 :LIRTFTAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56673 # 1o9rA.62.57 read from T0547.t04.many.frag # found chain 1o9rA in training set T0547 62 :IYGNFNKAR 1o9rA 58 :FRTQLDNHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56674 # 1k3sA.62.100 read from T0547.t04.many.frag # found chain 1k3sA in template set T0547 62 :IYGNFNKAR 1k3sA 101 :FISNVKQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56675 # 2bryA.62.33 read from T0547.t04.many.frag # found chain 2bryA in training set T0547 62 :IYGNFNKAR 2bryA 26 :VLSSFQGLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=56676 # 1aep.62.13 read from T0547.t04.many.frag # found chain 1aep in template set T0547 62 :IYGNFNKAR 1aep 14 :LNHTIVNAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56677 # 1xfiA.62.130 read from T0547.t04.many.frag # found chain 1xfiA in training set T0547 62 :IYGNFNKAR 1xfiA 131 :AISLFPQVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56678 # 1h6kA.62.88 read from T0547.t04.many.frag # found chain 1h6kA in template set T0547 62 :IYGNFNKAR 1h6kA 108 :MIRQLKESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56679 # 1mswD.62.80 read from T0547.t04.many.frag # found chain 1mswD in template set T0547 62 :IYGNFNKAR 1mswD 81 :MIARINDWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56680 # 2esnA.62.76 read from T0547.t04.many.frag # found chain 2esnA in template set T0547 62 :IYGNFNKAR 2esnA 75 :VAAALRALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56681 # 1lvaA.62.70 read from T0547.t04.many.frag # found chain 1lvaA in template set T0547 62 :IYGNFNKAR 1lvaA 447 :VTRALEEFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56682 # 1k0fA.62.138 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 62 :IYGNFNKAR 1k0fA 170 :YQQQLDKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56683 # 1wiwA.62.130 read from T0547.t04.many.frag # found chain 1wiwA in template set T0547 62 :IYGNFNKAR 1wiwA 131 :VDEALLEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=56684 # 1c3cA.62.118 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 62 :IYGNFNKAR 1c3cA 120 :FCDVLWEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56685 # 2b0cA.62.95 read from T0547.t04.many.frag # found chain 2b0cA in template set T0547 62 :IYGNFNKAR 2b0cA 96 :VIAIMHKLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56686 # 1k4nA.62.23 read from T0547.t04.many.frag # found chain 1k4nA in training set T0547 62 :IYGNFNKAR 1k4nA 24 :FIHALDELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56687 # 1z6mA.62.48 read from T0547.t04.many.frag # found chain 1z6mA in training set Warning: unaligning (T0547)I62 (1z6mA)S46 because G (3-10) conformation "forbidden" or filtered. T0547 63 :YGNFNKAR 1z6mA 47 :EELLAQSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=56688 # 1ct5A.62.20 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 62 :IYGNFNKAR 1ct5A 22 :VREVVNAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56689 # 1b5l.63.14 read from T0547.t04.many.frag # found chain 1b5l in template set T0547 63 :YGNFNKARK 1b5l 15 :LKLLDRMNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56690 # 1nw3A.63.78 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 63 :YGNFNKARK 1nw3A 79 :NRAIDSIHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56691 # 2d0tA.63.206 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 63 :YGNFNKARK 2d0tA 204 :ASCLEKALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56692 # 1r0dA.63.25 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 63 :YGNFNKARK 1r0dA 791 :SAAIEDAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56693 # 1k3sA.63.101 read from T0547.t04.many.frag # found chain 1k3sA in template set T0547 63 :YGNFNKARK 1k3sA 102 :ISNVKQLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56694 # 1mj5A.63.85 read from T0547.t04.many.frag # found chain 1mj5A in training set T0547 63 :YGNFNKARK 1mj5A 86 :RDYLDALWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56695 # 1p1jA.63.223 read from T0547.t04.many.frag # found chain 1p1jA in training set T0547 63 :YGNFNKARK 1p1jA 224 :RRDIQNFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56696 # 2bryA.63.34 read from T0547.t04.many.frag # found chain 2bryA in training set T0547 63 :YGNFNKARK 2bryA 27 :LSSFQGLCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56697 # 1u4qA.63.15 read from T0547.t04.many.frag # found chain 1u4qA in template set T0547 63 :YGNFNKARK 1u4qA 1676 :DFWLSEVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56698 # 2cx6A.63.69 read from T0547.t04.many.frag # found chain 2cx6A in template set T0547 63 :YGNFNKARK 2cx6A 70 :ILLFDEAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56699 # 1n5uA.63.46 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 63 :YGNFNKARK 1n5uA 47 :TEFAKTCVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56700 # 1aep.63.14 read from T0547.t04.many.frag # found chain 1aep in template set T0547 63 :YGNFNKARK 1aep 15 :NHTIVNAAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56701 # 1o9rA.63.58 read from T0547.t04.many.frag # found chain 1o9rA in training set T0547 63 :YGNFNKARK 1o9rA 59 :RTQLDNHGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56702 # 1c3cA.63.119 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 63 :YGNFNKARK 1c3cA 121 :CDVLWEVAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56703 # 1sg6A.63.55 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 63 :YGNFNKARK 1sg6A 56 :EEAFRKRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56704 # 1kaeA.63.91 read from T0547.t04.many.frag # found chain 1kaeA in training set T0547 63 :YGNFNKARK 1kaeA 92 :VKNIETFHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56705 # 1h6kA.63.89 read from T0547.t04.many.frag # found chain 1h6kA in template set T0547 63 :YGNFNKARK 1h6kA 109 :IRQLKESLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56706 # 1vdkA.63.167 read from T0547.t04.many.frag # found chain 1vdkA in training set T0547 63 :YGNFNKARK 1vdkA 168 :IRTFTAKAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56707 # 1t92A.63.19 read from T0547.t04.many.frag # found chain 1t92A in training set T0547 63 :YGNFNKARK 1t92A 44 :EGALDMYKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56708 # 1mswD.63.81 read from T0547.t04.many.frag # found chain 1mswD in template set T0547 63 :YGNFNKARK 1mswD 82 :IARINDWFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56709 # 1woyA.63.74 read from T0547.t04.many.frag # found chain 1woyA in template set T0547 63 :YGNFNKARK 1woyA 75 :SGRFKRAWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56710 # 1k0fA.63.139 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 63 :YGNFNKARK 1k0fA 171 :QQQLDKLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56711 # 1ct5A.63.21 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 63 :YGNFNKARK 1ct5A 23 :REVVNAEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56712 # 1xfiA.63.131 read from T0547.t04.many.frag # found chain 1xfiA in training set T0547 63 :YGNFNKARK 1xfiA 132 :ISLFPQVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56713 # 2esnA.63.77 read from T0547.t04.many.frag # found chain 2esnA in template set T0547 63 :YGNFNKARK 2esnA 76 :AAALRALGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56714 # 1vqoE.63.66 read from T0547.t04.many.frag # found chain 1vqoE in template set T0547 63 :YGNFNKARK 1vqoE 66 :QSHIENMFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56715 # 1gudA.63.19 read from T0547.t04.many.frag # found chain 1gudA in training set T0547 63 :YGNFNKARK 1gudA 20 :KKGIEDEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56716 # 1k87A.63.304 read from T0547.t04.many.frag # found chain 1k87A in template set T0547 63 :YGNFNKARK 1k87A 305 :QQAIHAIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56717 # 1lvaA.63.71 read from T0547.t04.many.frag # found chain 1lvaA in template set T0547 63 :YGNFNKARK 1lvaA 448 :TRALEEFHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56718 # 1v4sA.63.27 read from T0547.t04.many.frag # found chain 1v4sA in template set T0547 63 :YGNFNKARK 1v4sA 38 :QKEMDRGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56719 # 1b5l.64.15 read from T0547.t04.many.frag # found chain 1b5l in template set T0547 64 :GNFNKARKE 1b5l 16 :KLLDRMNRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56720 # 1r0dA.64.26 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 64 :GNFNKARKE 1r0dA 792 :AAIEDAVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56721 # 2cx6A.64.70 read from T0547.t04.many.frag # found chain 2cx6A in template set T0547 64 :GNFNKARKE 2cx6A 71 :LLFDEAEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56722 # 1u4qA.64.16 read from T0547.t04.many.frag # found chain 1u4qA in template set T0547 64 :GNFNKARKE 1u4qA 1677 :FWLSEVEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56723 # 2d0tA.64.207 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 64 :GNFNKARKE 2d0tA 205 :SCLEKALQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56724 # 1nw3A.64.79 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 64 :GNFNKARKE 1nw3A 80 :RAIDSIHQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56725 # 1mj5A.64.86 read from T0547.t04.many.frag # found chain 1mj5A in training set T0547 64 :GNFNKARKE 1mj5A 87 :DYLDALWEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56726 # 1k3sA.64.102 read from T0547.t04.many.frag # found chain 1k3sA in template set T0547 64 :GNFNKARKE 1k3sA 103 :SNVKQLKEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56727 # 1n5uA.64.47 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 64 :GNFNKARKE 1n5uA 48 :EFAKTCVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56728 # 1lvaA.64.72 read from T0547.t04.many.frag # found chain 1lvaA in template set T0547 64 :GNFNKARKE 1lvaA 449 :RALEEFHSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56729 # 1k4nA.64.25 read from T0547.t04.many.frag # found chain 1k4nA in training set T0547 64 :GNFNKARKE 1k4nA 26 :HALDELSRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56730 # 2bryA.64.35 read from T0547.t04.many.frag # found chain 2bryA in training set T0547 64 :GNFNKARKE 2bryA 28 :SSFQGLCRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56731 # 1aep.64.15 read from T0547.t04.many.frag # found chain 1aep in template set T0547 64 :GNFNKARKE 1aep 16 :HTIVNAAHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56732 # 1sg6A.64.56 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 64 :GNFNKARKE 1sg6A 57 :EAFRKRAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56733 # 1mswD.64.82 read from T0547.t04.many.frag # found chain 1mswD in template set T0547 64 :GNFNKARKE 1mswD 83 :ARINDWFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56734 # 1p1jA.64.224 read from T0547.t04.many.frag # found chain 1p1jA in training set T0547 64 :GNFNKARKE 1p1jA 225 :RDIQNFKEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56735 # 1h6kA.64.90 read from T0547.t04.many.frag # found chain 1h6kA in template set T0547 64 :GNFNKARKE 1h6kA 110 :RQLKESLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56736 # 1woyA.64.75 read from T0547.t04.many.frag # found chain 1woyA in template set T0547 64 :GNFNKARKE 1woyA 76 :GRFKRAWDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56737 # 1lqvA.64.77 read from T0547.t04.many.frag # found chain 1lqvA in training set T0547 64 :GNFNKARKE 1lqvA 78 :GLVRLVHQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56738 # 2esnA.64.78 read from T0547.t04.many.frag # found chain 2esnA in template set T0547 64 :GNFNKARKE 2esnA 77 :AALRALGEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56739 # 1vdkA.64.168 read from T0547.t04.many.frag # found chain 1vdkA in training set T0547 64 :GNFNKARKE 1vdkA 169 :RTFTAKAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56740 # 1kaeA.64.92 read from T0547.t04.many.frag # found chain 1kaeA in training set T0547 64 :GNFNKARKE 1kaeA 93 :KNIETFHTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56741 # 1t92A.64.20 read from T0547.t04.many.frag # found chain 1t92A in training set Warning: unaligning (T0547)G64 (1t92A)G45 because H (helix) conformation "forbidden" or filtered. T0547 65 :NFNKARKE 1t92A 46 :ALDMYKLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=56742 # 1q7lB.64.4 read from T0547.t04.many.frag # found chain 1q7lB in training set T0547 64 :GNFNKARKE 1q7lB 325 :AAFSRVCKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56743 # 1itxA.64.200 read from T0547.t04.many.frag # found chain 1itxA in training set T0547 64 :GNFNKARKE 1itxA 233 :EKLDAAGAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56744 # 1k87A.64.305 read from T0547.t04.many.frag # found chain 1k87A in template set T0547 64 :GNFNKARKE 1k87A 306 :QAIHAIGKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56745 # 1c3cA.64.120 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 64 :GNFNKARKE 1c3cA 122 :DVLWEVANR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56746 # 1gqeA.64.15 read from T0547.t04.many.frag # found chain 1gqeA in template set T0547 64 :GNFNKARKE 1gqeA 16 :ERSDVLRGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56747 # 1gudA.64.20 read from T0547.t04.many.frag # found chain 1gudA in training set T0547 64 :GNFNKARKE 1gudA 21 :KGIEDEAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56748 # 1vpqA.64.108 read from T0547.t04.many.frag # found chain 1vpqA in template set T0547 64 :GNFNKARKE 1vpqA 97 :RQIEPLIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56749 # 2cx6A.65.71 read from T0547.t04.many.frag # found chain 2cx6A in template set T0547 65 :NFNKARKEF 2cx6A 72 :LFDEAEEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56750 # 1h6kA.65.91 read from T0547.t04.many.frag # found chain 1h6kA in template set T0547 65 :NFNKARKEF 1h6kA 111 :QLKESLKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56751 # 2d0tA.65.208 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 65 :NFNKARKEF 2d0tA 206 :CLEKALQVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56752 # 1u4qA.65.17 read from T0547.t04.many.frag # found chain 1u4qA in template set T0547 65 :NFNKARKEF 1u4qA 1678 :WLSEVEALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56753 # 1r0dA.65.27 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 65 :NFNKARKEF 1r0dA 793 :AIEDAVRRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56754 # 1mj5A.65.87 read from T0547.t04.many.frag # found chain 1mj5A in training set T0547 65 :NFNKARKEF 1mj5A 88 :YLDALWEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56755 # 1k4nA.65.26 read from T0547.t04.many.frag # found chain 1k4nA in training set T0547 65 :NFNKARKEF 1k4nA 27 :ALDELSRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56756 # 1sg6A.65.57 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 65 :NFNKARKEF 1sg6A 58 :AFRKRAAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56757 # 1q7lB.65.5 read from T0547.t04.many.frag # found chain 1q7lB in training set T0547 65 :NFNKARKEF 1q7lB 326 :AFSRVCKDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=56758 # 1lqvA.65.78 read from T0547.t04.many.frag # found chain 1lqvA in training set Warning: unaligning (T0547)F73 (1lqvA)R87 because G (3-10) conformation "forbidden" or filtered. T0547 65 :NFNKARKE 1lqvA 79 :LVRLVHQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=56759 # 1mswD.65.83 read from T0547.t04.many.frag # found chain 1mswD in template set T0547 65 :NFNKARKEF 1mswD 84 :RINDWFEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56760 # 1b5l.65.16 read from T0547.t04.many.frag # found chain 1b5l in template set T0547 65 :NFNKARKEF 1b5l 17 :LLDRMNRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56761 # 1kaeA.65.93 read from T0547.t04.many.frag # found chain 1kaeA in training set T0547 65 :NFNKARKEF 1kaeA 94 :NIETFHTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56762 # 1k3sA.65.103 read from T0547.t04.many.frag # found chain 1k3sA in template set T0547 65 :NFNKARKEF 1k3sA 104 :NVKQLKEHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56763 # 1woyA.65.76 read from T0547.t04.many.frag # found chain 1woyA in template set T0547 65 :NFNKARKEF 1woyA 77 :RFKRAWDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56764 # 1n5uA.65.48 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 65 :NFNKARKEF 1n5uA 49 :FAKTCVADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56765 # 1lvaA.65.73 read from T0547.t04.many.frag # found chain 1lvaA in template set T0547 65 :NFNKARKEF 1lvaA 450 :ALEEFHSRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56766 # 1aep.65.16 read from T0547.t04.many.frag # found chain 1aep in template set T0547 65 :NFNKARKEF 1aep 17 :TIVNAAHEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56767 # 2bryA.65.36 read from T0547.t04.many.frag # found chain 2bryA in training set T0547 65 :NFNKARKEF 2bryA 29 :SFQGLCRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56768 # 1gudA.65.21 read from T0547.t04.many.frag # found chain 1gudA in training set T0547 65 :NFNKARKEF 1gudA 22 :GIEDEAKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56769 # 1p1jA.65.225 read from T0547.t04.many.frag # found chain 1p1jA in training set T0547 65 :NFNKARKEF 1p1jA 226 :DIQNFKEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56770 # 1k47A.65.73 read from T0547.t04.many.frag # found chain 1k47A in template set T0547 65 :NFNKARKEF 1k47A 72 :LMGDFLAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56771 # 1vdkA.65.169 read from T0547.t04.many.frag # found chain 1vdkA in training set T0547 65 :NFNKARKEF 1vdkA 170 :TFTAKAQAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56772 # 1j2zA.65.226 read from T0547.t04.many.frag # found chain 1j2zA in template set T0547 65 :NFNKARKEF 1j2zA 227 :SAKLELEEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56773 # 1itxA.65.201 read from T0547.t04.many.frag # found chain 1itxA in training set T0547 65 :NFNKARKEF 1itxA 234 :KLDAAGAVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56774 # 1gvnA.65.23 read from T0547.t04.many.frag # found chain 1gvnA in template set T0547 65 :NFNKARKEF 1gvnA 24 :RVLNYVLNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56775 # 1efyA.65.19 read from T0547.t04.many.frag # found chain 1efyA in template set T0547 65 :NFNKARKEF 1efyA 681 :SMKKAMVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56776 # 1nw3A.65.80 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 65 :NFNKARKEF 1nw3A 81 :AIDSIHQLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=56777 # 1c3cA.65.121 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 65 :NFNKARKEF 1c3cA 123 :VLWEVANRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56778 # 1uddA.65.85 read from T0547.t04.many.frag # found chain 1uddA in template set T0547 65 :NFNKARKEF 1uddA 86 :NYVKLLKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56779 # 1mj5A.66.88 read from T0547.t04.many.frag # found chain 1mj5A in training set T0547 66 :FNKARKEFG 1mj5A 89 :LDALWEALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56780 # 1lqvA.66.79 read from T0547.t04.many.frag # found chain 1lqvA in training set Warning: unaligning (T0547)G74 (1lqvA)T88 because S (epsilon) conformation "forbidden" or filtered. T0547 66 :FNKARKEF 1lqvA 80 :VRLVHQER Number of specific fragments extracted= 1 number of extra gaps= 1 total=56781 # 2bryA.66.37 read from T0547.t04.many.frag # found chain 2bryA in training set T0547 66 :FNKARKEFG 2bryA 30 :FQGLCRALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56782 # 1q7lB.66.6 read from T0547.t04.many.frag # found chain 1q7lB in training set T0547 66 :FNKARKEFG 1q7lB 327 :FSRVCKDMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56783 # 2cx6A.66.72 read from T0547.t04.many.frag # found chain 2cx6A in template set T0547 66 :FNKARKEFG 2cx6A 73 :FDEAEEELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56784 # 1u4qA.66.18 read from T0547.t04.many.frag # found chain 1u4qA in template set T0547 66 :FNKARKEFG 1u4qA 1679 :LSEVEALLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56785 # 1k4nA.66.27 read from T0547.t04.many.frag # found chain 1k4nA in training set T0547 66 :FNKARKEFG 1k4nA 28 :LDELSRRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56786 # 1p1jA.66.226 read from T0547.t04.many.frag # found chain 1p1jA in training set T0547 66 :FNKARKEFG 1p1jA 227 :IQNFKEENA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56787 # 1sg6A.66.58 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 66 :FNKARKEFG 1sg6A 59 :FRKRAAEIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56788 # 1kpf.66.80 read from T0547.t04.many.frag # found chain 1kpf in training set T0547 66 :FNKARKEFG 1kpf 81 :GKKCAADLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56789 # 1mg7A.66.97 read from T0547.t04.many.frag # found chain 1mg7A in training set T0547 66 :FNKARKEFG 1mg7A 104 :LRDFIDQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56790 # 1efyA.66.20 read from T0547.t04.many.frag # found chain 1efyA in template set T0547 66 :FNKARKEFG 1efyA 682 :MKKAMVEFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56791 # 1h6kA.66.92 read from T0547.t04.many.frag # found chain 1h6kA in template set T0547 66 :FNKARKEFG 1h6kA 112 :LKESLKANN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56792 # 1woyA.66.77 read from T0547.t04.many.frag # found chain 1woyA in template set T0547 66 :FNKARKEFG 1woyA 78 :FKRAWDLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56793 # 2d0tA.66.209 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 66 :FNKARKEFG 2d0tA 207 :LEKALQVFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56794 # 1b5l.66.17 read from T0547.t04.many.frag # found chain 1b5l in template set T0547 66 :FNKARKEFG 1b5l 18 :LDRMNRLSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=56795 # 1gudA.66.22 read from T0547.t04.many.frag # found chain 1gudA in training set T0547 66 :FNKARKEFG 1gudA 23 :IEDEAKTLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56796 # 1gqeA.66.17 read from T0547.t04.many.frag # found chain 1gqeA in template set T0547 66 :FNKARKEFG 1gqeA 18 :SDVLRGYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56797 # 1r0dA.66.28 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 66 :FNKARKEFG 1r0dA 794 :IEDAVRRIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56798 # 1j2zA.66.227 read from T0547.t04.many.frag # found chain 1j2zA in template set T0547 66 :FNKARKEFG 1j2zA 228 :AKLELEEHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56799 # 1yvhA.66.40 read from T0547.t04.many.frag # found chain 1yvhA in template set Warning: unaligning (T0547)G74 (1yvhA)Q71 because G (3-10) conformation "forbidden" or filtered. T0547 66 :FNKARKEF 1yvhA 63 :MDKVVRLC Number of specific fragments extracted= 1 number of extra gaps= 1 total=56800 # 1k47A.66.74 read from T0547.t04.many.frag # found chain 1k47A in template set T0547 66 :FNKARKEFG 1k47A 73 :MGDFLAVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56801 # 1kaeA.66.94 read from T0547.t04.many.frag # found chain 1kaeA in training set T0547 66 :FNKARKEFG 1kaeA 95 :IETFHTAQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56802 # 1uddA.66.86 read from T0547.t04.many.frag # found chain 1uddA in template set T0547 66 :FNKARKEFG 1uddA 87 :YVKLLKELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56803 # 1gvnA.66.24 read from T0547.t04.many.frag # found chain 1gvnA in template set T0547 66 :FNKARKEFG 1gvnA 25 :VLNYVLNHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56804 2a2fX expands to /projects/compbio/data/pdb/2a2f.pdb.gz 2a2fX:# 2a2fX.66.27 read from T0547.t04.many.frag # adding 2a2fX to template set # found chain 2a2fX in template set T0547 66 :FNKARKEFG 2a2fX 28 :FREILDKEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56805 # 1aep.66.17 read from T0547.t04.many.frag # found chain 1aep in template set T0547 66 :FNKARKEFG 1aep 18 :IVNAAHELH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56806 # 1lvaA.66.74 read from T0547.t04.many.frag # found chain 1lvaA in template set T0547 66 :FNKARKEFG 1lvaA 451 :LEEFHSRYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=56807 # 1mswD.66.84 read from T0547.t04.many.frag # found chain 1mswD in template set T0547 66 :FNKARKEFG 1mswD 85 :INDWFEEVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56808 # 1n5uA.66.49 read from T0547.t04.many.frag # found chain 1n5uA in template set Warning: unaligning (T0547)G74 (1n5uA)S58 because G (3-10) conformation "forbidden" or filtered. T0547 66 :FNKARKEF 1n5uA 50 :AKTCVADE Number of specific fragments extracted= 1 number of extra gaps= 1 total=56809 # 1lqvA.67.80 read from T0547.t04.many.frag # found chain 1lqvA in training set T0547 67 :NKARKEFGY 1lqvA 81 :RLVHQERTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56810 # 1mj5A.67.89 read from T0547.t04.many.frag # found chain 1mj5A in training set T0547 67 :NKARKEFGY 1mj5A 90 :DALWEALDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56811 # 1q7lB.67.7 read from T0547.t04.many.frag # found chain 1q7lB in training set T0547 67 :NKARKEFGY 1q7lB 328 :SRVCKDMNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56812 # 1p1jA.67.227 read from T0547.t04.many.frag # found chain 1p1jA in training set Warning: unaligning (T0547)F73 (1p1jA)N234 because G (3-10) conformation "forbidden" or filtered. T0547 67 :NKARKE 1p1jA 228 :QNFKEE T0547 74 :GY 1p1jA 235 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=56814 # 1kpf.67.81 read from T0547.t04.many.frag # found chain 1kpf in training set T0547 67 :NKARKEFGY 1kpf 82 :KKCAADLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56815 # 2cx6A.67.73 read from T0547.t04.many.frag # found chain 2cx6A in template set T0547 67 :NKARKEFGY 2cx6A 74 :DEAEEELEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56816 # 1sg6A.67.59 read from T0547.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)Y75 (1sg6A)P68 because C (cis) conformation "forbidden" or filtered. T0547 67 :NKARKEFG 1sg6A 60 :RKRAAEIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=56817 # 1v54H.67.72 read from T0547.t04.many.frag # found chain 1v54H in training set T0547 67 :NKARKEFGY 1v54H 73 :DDRRAEGTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56818 # 1efyA.67.21 read from T0547.t04.many.frag # found chain 1efyA in template set T0547 67 :NKARKEFGY 1efyA 683 :KKAMVEFEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56819 # 2absA.67.50 read from T0547.t04.many.frag # found chain 2absA in training set Warning: unaligning (T0547)F73 (2absA)F37 because G (3-10) conformation "forbidden" or filtered. T0547 67 :NKARKE 2absA 31 :SSFLDE T0547 74 :GY 2absA 38 :FL Number of specific fragments extracted= 2 number of extra gaps= 1 total=56821 # 1u4qA.67.19 read from T0547.t04.many.frag # found chain 1u4qA in template set T0547 67 :NKARKEFGY 1u4qA 1680 :SEVEALLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56822 # 1uddA.67.87 read from T0547.t04.many.frag # found chain 1uddA in template set T0547 67 :NKARKEFGY 1uddA 88 :VKLLKELDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56823 # 2bryA.67.38 read from T0547.t04.many.frag # found chain 2bryA in training set T0547 67 :NKARKEFGY 2bryA 31 :QGLCRALGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56824 # 1gvnA.67.25 read from T0547.t04.many.frag # found chain 1gvnA in template set T0547 67 :NKARKEFGY 1gvnA 26 :LNYVLNHEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56825 # 2f2gA.67.92 read from T0547.t04.many.frag # found chain 2f2gA in template set T0547 67 :NKARKEFGY 2f2gA 93 :KREGSKWDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56826 # 1lvaA.67.75 read from T0547.t04.many.frag # found chain 1lvaA in template set T0547 67 :NKARKEFGY 1lvaA 452 :EEFHSRYPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56827 # 2a2fX.67.28 read from T0547.t04.many.frag # found chain 2a2fX in template set Warning: unaligning (T0547)F73 (2a2fX)E35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y75 (2a2fX)F37 because L (left) conformation "forbidden" or filtered. T0547 67 :NKARKE 2a2fX 29 :REILDK T0547 74 :G 2a2fX 36 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=56829 # 1kaeA.67.95 read from T0547.t04.many.frag # found chain 1kaeA in training set T0547 67 :NKARKEFGY 1kaeA 96 :ETFHTAQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56830 # 1h6kA.67.93 read from T0547.t04.many.frag # found chain 1h6kA in template set Warning: unaligning (T0547)F73 (1h6kA)N119 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G74 (1h6kA)N120 because N (gamma') conformation "forbidden" or filtered. T0547 67 :NKARKE 1h6kA 113 :KESLKA T0547 75 :Y 1h6kA 121 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=56832 # 1j2zA.67.228 read from T0547.t04.many.frag # found chain 1j2zA in template set T0547 67 :NKARKEFGY 1j2zA 229 :KLELEEHAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56833 # 1k4nA.67.28 read from T0547.t04.many.frag # found chain 1k4nA in training set T0547 67 :NKARKEFGY 1k4nA 29 :DELSRRLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56834 # 1mg7A.67.98 read from T0547.t04.many.frag # found chain 1mg7A in training set T0547 67 :NKARKEFGY 1mg7A 105 :RDFIDQLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56835 # 1gudA.67.23 read from T0547.t04.many.frag # found chain 1gudA in training set T0547 67 :NKARKEFGY 1gudA 24 :EDEAKTLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56836 # 1xszA.67.29 read from T0547.t04.many.frag # found chain 1xszA in training set T0547 67 :NKARKEFGY 1xszA 28 :KEICEQYKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=56837 # 1k47A.67.75 read from T0547.t04.many.frag # found chain 1k47A in template set T0547 67 :NKARKEFGY 1k47A 74 :GDFLAVRGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56838 # 2ewcA.67.49 read from T0547.t04.many.frag # found chain 2ewcA in template set T0547 67 :NKARKEFGY 2ewcA 50 :ERRLALVGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56839 # 1woyA.67.78 read from T0547.t04.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)F73 (1woyA)L85 because G (3-10) conformation "forbidden" or filtered. T0547 67 :NKARKE 1woyA 79 :KRAWDL T0547 74 :GY 1woyA 86 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=56841 # 1f45B.67.116 read from T0547.t04.many.frag # found chain 1f45B in template set T0547 67 :NKARKEFGY 1f45B 117 :KTMNAKLLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=56842 # 1p4xA.67.115 read from T0547.t04.many.frag # found chain 1p4xA in template set Warning: unaligning (T0547)G74 (1p4xA)Q123 because N (gamma') conformation "forbidden" or filtered. T0547 67 :NKARKEF 1p4xA 116 :KQFNLAD T0547 75 :Y 1p4xA 124 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=56844 # 1n5uA.67.50 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 67 :NKARKEFGY 1n5uA 51 :KTCVADESA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56845 # 1kpf.68.82 read from T0547.t04.many.frag # found chain 1kpf in training set T0547 68 :KARKEFGYK 1kpf 83 :KCAADLGLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56846 # 1lqvA.68.81 read from T0547.t04.many.frag # found chain 1lqvA in training set Warning: unaligning (T0547)G74 (1lqvA)T88 because S (epsilon) conformation "forbidden" or filtered. T0547 68 :KARKEF 1lqvA 82 :LVHQER T0547 75 :YK 1lqvA 89 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=56848 # 1q7lB.68.8 read from T0547.t04.many.frag # found chain 1q7lB in training set T0547 68 :KARKEFGYK 1q7lB 329 :RVCKDMNLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56849 # 1mj5A.68.90 read from T0547.t04.many.frag # found chain 1mj5A in training set T0547 68 :KARKEFGYK 1mj5A 91 :ALWEALDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56850 # 1uddA.68.88 read from T0547.t04.many.frag # found chain 1uddA in template set T0547 68 :KARKEFGYK 1uddA 89 :KLLKELDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56851 # 1v54H.68.73 read from T0547.t04.many.frag # found chain 1v54H in training set Warning: unaligning (T0547)G74 (1v54H)T80 because G (3-10) conformation "forbidden" or filtered. T0547 68 :KARKEF 1v54H 74 :DRRAEG T0547 75 :YK 1v54H 81 :FP Number of specific fragments extracted= 2 number of extra gaps= 1 total=56853 # 1koe.68.28 read from T0547.t04.many.frag # found chain 1koe in training set T0547 68 :KARKEFGYK 1koe 166 :QQARAVGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56854 # 1gvnA.68.26 read from T0547.t04.many.frag # found chain 1gvnA in template set Warning: unaligning (T0547)F73 (1gvnA)H32 because G (3-10) conformation "forbidden" or filtered. T0547 68 :KARKE 1gvnA 27 :NYVLN T0547 74 :GYK 1gvnA 33 :ELN Number of specific fragments extracted= 2 number of extra gaps= 1 total=56856 # 1sg6A.68.60 read from T0547.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)Y75 (1sg6A)P68 because C (cis) conformation "forbidden" or filtered. T0547 68 :KARKEFG 1sg6A 61 :KRAAEIT T0547 76 :K 1sg6A 69 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=56858 # 2absA.68.51 read from T0547.t04.many.frag # found chain 2absA in training set T0547 68 :KARKEFGYK 2absA 32 :SFLDEFFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56859 # 2bryA.68.39 read from T0547.t04.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)F73 (2bryA)L37 because G (3-10) conformation "forbidden" or filtered. T0547 68 :KARKE 2bryA 32 :GLCRA T0547 74 :GYK 2bryA 38 :GVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=56861 # 1k47A.68.76 read from T0547.t04.many.frag # found chain 1k47A in template set T0547 68 :KARKEFGYK 1k47A 75 :DFLAVRGQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56862 # 2ewcA.68.50 read from T0547.t04.many.frag # found chain 2ewcA in template set T0547 68 :KARKEFGYK 2ewcA 51 :RRLALVGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=56863 # 1mg7A.68.99 read from T0547.t04.many.frag # found chain 1mg7A in training set T0547 68 :KARKEFGYK 1mg7A 106 :DFIDQLKLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56864 # 2cx6A.68.74 read from T0547.t04.many.frag # found chain 2cx6A in template set T0547 68 :KARKEFGYK 2cx6A 75 :EAEEELEGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=56865 # 1efyA.68.22 read from T0547.t04.many.frag # found chain 1efyA in template set T0547 68 :KARKEFGYK 1efyA 684 :KAMVEFEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=56866 # 1p1jA.68.228 read from T0547.t04.many.frag # found chain 1p1jA in training set T0547 68 :KARKEFGYK 1p1jA 229 :NFKEENALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56867 # 1uekA.68.65 read from T0547.t04.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)Y75 (1uekA)Q73 because L (left) conformation "forbidden" or filtered. T0547 68 :KARKEFG 1uekA 66 :LYLEAAG T0547 76 :K 1uekA 74 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=56869 # 1gudA.68.24 read from T0547.t04.many.frag # found chain 1gudA in training set T0547 68 :KARKEFGYK 1gudA 25 :DEAKTLGVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56870 # 1j2zA.68.229 read from T0547.t04.many.frag # found chain 1j2zA in template set T0547 68 :KARKEFGYK 1j2zA 230 :LELEEHANN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56871 # 1xszA.68.30 read from T0547.t04.many.frag # found chain 1xszA in training set T0547 68 :KARKEFGYK 1xszA 29 :EICEQYKIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56872 # 2f2gA.68.93 read from T0547.t04.many.frag # found chain 2f2gA in template set T0547 68 :KARKEFGYK 2f2gA 94 :REGSKWDVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56873 # 1k4nA.68.29 read from T0547.t04.many.frag # found chain 1k4nA in training set T0547 68 :KARKEFGYK 1k4nA 30 :ELSRRLGLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56874 # 1uarA.68.68 read from T0547.t04.many.frag # found chain 1uarA in training set T0547 68 :KARKEFGYK 1uarA 69 :KLMERLGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56875 # 2bo4A.68.51 read from T0547.t04.many.frag # found chain 2bo4A in template set T0547 68 :KARKEFGYK 2bo4A 52 :EISRATGTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=56876 # 2a2fX.68.29 read from T0547.t04.many.frag # found chain 2a2fX in template set Warning: unaligning (T0547)Y75 (2a2fX)F37 because L (left) conformation "forbidden" or filtered. T0547 68 :KARKEFG 2a2fX 30 :EILDKEQ T0547 76 :K 2a2fX 38 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=56878 # 1rifA.68.69 read from T0547.t04.many.frag # found chain 1rifA in template set T0547 68 :KARKEFGYK 1rifA 70 :KFCDNFGYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56879 # 1woyA.68.79 read from T0547.t04.many.frag # found chain 1woyA in template set T0547 68 :KARKEFGYK 1woyA 80 :RAWDLLGIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=56880 # 1pmi.68.82 read from T0547.t04.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)K76 (1pmi)S92 because G (3-10) conformation "forbidden" or filtered. T0547 68 :KARKEFGY 1pmi 84 :SIITKFGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=56881 # 1b8oA.68.175 read from T0547.t04.many.frag # found chain 1b8oA in training set T0547 68 :KARKEFGYK 1b8oA 176 :STWKQMGEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56882 # 1kpf.69.83 read from T0547.t04.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)G77 (1kpf)K92 because G (3-10) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 1kpf 84 :CAADLGLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=56883 # 1mj5A.69.91 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G77 (1mj5A)D100 because G (3-10) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 1mj5A 92 :LWEALDLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=56884 # 1lqvA.69.82 read from T0547.t04.many.frag # found chain 1lqvA in training set T0547 69 :ARKEFGYKG 1lqvA 83 :VHQERTLAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56885 # 1mg7A.69.100 read from T0547.t04.many.frag # found chain 1mg7A in training set Warning: unaligning (T0547)G77 (1mg7A)N115 because E (beta_S) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 1mg7A 107 :FIDQLKLH Number of specific fragments extracted= 1 number of extra gaps= 1 total=56886 # 1koe.69.29 read from T0547.t04.many.frag # found chain 1koe in training set T0547 69 :ARKEFGYKG 1koe 167 :QARAVGLSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56887 # 1q7lB.69.9 read from T0547.t04.many.frag # found chain 1q7lB in training set T0547 69 :ARKEFGYKG 1q7lB 330 :VCKDMNLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56888 # 1gvnA.69.27 read from T0547.t04.many.frag # found chain 1gvnA in template set Warning: unaligning (T0547)K76 (1gvnA)N35 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEFGY 1gvnA 28 :YVLNHEL T0547 77 :G 1gvnA 36 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=56890 # 1uarA.69.69 read from T0547.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)K76 (1uarA)S77 because E (beta_S) conformation "forbidden" or filtered. T0547 69 :ARKEFGY 1uarA 70 :LMERLGI T0547 77 :G 1uarA 78 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=56892 # 1kqpA.69.5 read from T0547.t04.many.frag # found chain 1kqpA in training set T0547 69 :ARKEFGYKG 1kqpA 6 :IMRELHVKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=56893 # 2absA.69.52 read from T0547.t04.many.frag # found chain 2absA in training set Warning: unaligning (T0547)G77 (2absA)R41 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 2absA 33 :FLDEFFLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=56894 # 1k47A.69.77 read from T0547.t04.many.frag # found chain 1k47A in template set T0547 69 :ARKEFGYKG 1k47A 76 :FLAVRGQNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56895 # 1uekA.69.66 read from T0547.t04.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)Y75 (1uekA)Q73 because L (left) conformation "forbidden" or filtered. T0547 69 :ARKEFG 1uekA 67 :YLEAAG T0547 76 :KG 1uekA 74 :PG Number of specific fragments extracted= 2 number of extra gaps= 1 total=56897 # 1p1jA.69.229 read from T0547.t04.many.frag # found chain 1p1jA in training set T0547 69 :ARKEFGYKG 1p1jA 230 :FKEENALDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56898 # 1v54H.69.74 read from T0547.t04.many.frag # found chain 1v54H in training set Warning: unaligning (T0547)F73 (1v54H)G79 because T (delta_L) conformation "forbidden" or filtered. T0547 69 :ARKE 1v54H 75 :RRAE T0547 74 :GYKG 1v54H 80 :TFPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=56900 # 1gudA.69.25 read from T0547.t04.many.frag # found chain 1gudA in training set T0547 69 :ARKEFGYKG 1gudA 26 :EAKTLGVSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56901 # 2bryA.69.40 read from T0547.t04.many.frag # found chain 2bryA in training set T0547 69 :ARKEFGYKG 2bryA 33 :LCRALGVES Number of specific fragments extracted= 1 number of extra gaps= 0 total=56902 # 2bo4A.69.52 read from T0547.t04.many.frag # found chain 2bo4A in template set Warning: unaligning (T0547)K76 (2bo4A)P60 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEFGY 2bo4A 53 :ISRATGT T0547 77 :G 2bo4A 61 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=56904 # 1zwxA.69.177 read from T0547.t04.many.frag # found chain 1zwxA in template set T0547 69 :ARKEFGYKG 1zwxA 212 :FIAKKNIPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=56905 # 1efyA.69.23 read from T0547.t04.many.frag # found chain 1efyA in template set T0547 69 :ARKEFGYKG 1efyA 685 :AMVEFEIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56906 # 1qlwA.69.140 read from T0547.t04.many.frag # found chain 1qlwA in training set Warning: unaligning (T0547)K76 (1qlwA)G148 because Y (epsilon') conformation "forbidden" or filtered. T0547 69 :ARKEFGY 1qlwA 141 :AWAIFRF T0547 77 :G 1qlwA 149 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=56908 # 1uddA.69.89 read from T0547.t04.many.frag # found chain 1uddA in template set T0547 69 :ARKEFGYKG 1uddA 90 :LLKELDLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=56909 # 1pmi.69.83 read from T0547.t04.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)G77 (1pmi)K93 because G (3-10) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 1pmi 85 :IITKFGSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=56910 # 1xszA.69.31 read from T0547.t04.many.frag # found chain 1xszA in training set T0547 69 :ARKEFGYKG 1xszA 30 :ICEQYKISP Number of specific fragments extracted= 1 number of extra gaps= 0 total=56911 # 1sg6A.69.61 read from T0547.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)Y75 (1sg6A)P68 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1sg6A)S69 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEFG 1sg6A 62 :RAAEIT T0547 77 :G 1sg6A 70 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=56913 # 2a2fX.69.30 read from T0547.t04.many.frag # found chain 2a2fX in template set T0547 69 :ARKEFGYKG 2a2fX 31 :ILDKEQFLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=56914 # 1pjr.69.102 read from T0547.t04.many.frag # found chain 1pjr in template set T0547 69 :ARKEFGYKG 1pjr 103 :DIDRIGINR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56915 # 1woyA.69.80 read from T0547.t04.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)G77 (1woyA)Y89 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 1woyA 81 :AWDLLGIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=56916 # 1k4iA.69.72 read from T0547.t04.many.frag # found chain 1k4iA in training set Warning: unaligning (T0547)G77 (1k4iA)Q81 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 1k4iA 73 :RTTALDLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=56917 # 2ewcA.69.51 read from T0547.t04.many.frag # found chain 2ewcA in template set Warning: unaligning (T0547)K76 (2ewcA)T59 because Y (epsilon') conformation "forbidden" or filtered. T0547 69 :ARKEFGY 2ewcA 52 :RLALVGL T0547 77 :G 2ewcA 60 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=56919 1uvjA expands to /projects/compbio/data/pdb/1uvj.pdb.gz 1uvjA:# 1uvjA.69.188 read from T0547.t04.many.frag # adding 1uvjA to template set # found chain 1uvjA in template set T0547 69 :ARKEFGYKG 1uvjA 189 :AYQLHQMGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=56920 # 1kpf.70.84 read from T0547.t04.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)G77 (1kpf)K92 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKEFGYK 1kpf 85 :AADLGLN T0547 78 :G 1kpf 93 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=56922 # 1mj5A.70.92 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G77 (1mj5A)D100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1mj5A)R101 because D (zeta) conformation "forbidden" or filtered. T0547 70 :RKEFGYK 1mj5A 93 :WEALDLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=56923 # 1koe.70.30 read from T0547.t04.many.frag # found chain 1koe in training set Warning: unaligning (T0547)G77 (1koe)G175 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYK 1koe 168 :ARAVGLS T0547 78 :G 1koe 176 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=56925 # 1lqvA.70.83 read from T0547.t04.many.frag # found chain 1lqvA in training set Warning: unaligning (T0547)G77 (1lqvA)F91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1lqvA)P92 because C (cis) conformation "forbidden" or filtered. T0547 70 :RKEFGYK 1lqvA 84 :HQERTLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=56926 # 1mg7A.70.101 read from T0547.t04.many.frag # found chain 1mg7A in training set T0547 70 :RKEFGYKGG 1mg7A 108 :IDQLKLHNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=56927 # 1uarA.70.70 read from T0547.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)G78 (1uarA)D79 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1uarA 71 :MERLGISN Number of specific fragments extracted= 1 number of extra gaps= 1 total=56928 # 1q7lB.70.10 read from T0547.t04.many.frag # found chain 1q7lB in training set Warning: unaligning (T0547)G77 (1q7lB)L338 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1q7lB)E339 because D (zeta) conformation "forbidden" or filtered. T0547 70 :RKEFGYK 1q7lB 331 :CKDMNLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=56929 # 1kqpA.70.6 read from T0547.t04.many.frag # found chain 1kqpA in training set T0547 70 :RKEFGYKGG 1kqpA 7 :MRELHVKPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=56930 # 1uekA.70.67 read from T0547.t04.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)Y75 (1uekA)Q73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1uekA)G76 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFG 1uekA 68 :LEAAG T0547 76 :KG 1uekA 74 :PG Number of specific fragments extracted= 2 number of extra gaps= 2 total=56932 # 2absA.70.53 read from T0547.t04.many.frag # found chain 2absA in training set Warning: unaligning (T0547)K76 (2absA)K40 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (2absA)R41 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGY 2absA 34 :LDEFFL T0547 78 :G 2absA 42 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=56934 # 1zwxA.70.178 read from T0547.t04.many.frag # found chain 1zwxA in template set T0547 70 :RKEFGYKGG 1zwxA 213 :IAKKNIPKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56935 # 1gvnA.70.28 read from T0547.t04.many.frag # found chain 1gvnA in template set T0547 70 :RKEFGYKGG 1gvnA 29 :VLNHELNKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56936 # 1pjr.70.103 read from T0547.t04.many.frag # found chain 1pjr in template set T0547 70 :RKEFGYKGG 1pjr 104 :IDRIGINRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=56937 # 1k47A.70.78 read from T0547.t04.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)G78 (1k47A)R85 because E (beta_S) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1k47A 77 :LAVRGQNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=56938 # 2bo4A.70.53 read from T0547.t04.many.frag # found chain 2bo4A in template set Warning: unaligning (T0547)G77 (2bo4A)V61 because E (beta_S) conformation "forbidden" or filtered. T0547 70 :RKEFGYK 2bo4A 54 :SRATGTP T0547 78 :G 2bo4A 62 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=56940 # 1gudA.70.26 read from T0547.t04.many.frag # found chain 1gudA in training set T0547 70 :RKEFGYKGG 1gudA 27 :AKTLGVSVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=56941 # 1woyA.70.81 read from T0547.t04.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)G77 (1woyA)Y89 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYK 1woyA 82 :WDLLGIA T0547 78 :G 1woyA 90 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=56943 # 1v54H.70.75 read from T0547.t04.many.frag # found chain 1v54H in training set Warning: unaligning (T0547)G78 (1v54H)K84 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1v54H 76 :RAEGTFPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=56944 # 2aeuA.70.67 read from T0547.t04.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)G78 (2aeuA)N76 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 2aeuA 68 :LKHLGGDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=56945 # 1ow1A.70.94 read from T0547.t04.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)G78 (1ow1A)D3572 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1ow1A 3564 :ARRMTVET Number of specific fragments extracted= 1 number of extra gaps= 1 total=56946 # 1wz3A.70.75 read from T0547.t04.many.frag # found chain 1wz3A in training set Warning: unaligning (T0547)G74 (1wz3A)G78 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1wz3A)D80 because L (left) conformation "forbidden" or filtered. T0547 70 :RKEF 1wz3A 74 :YNNF T0547 75 :Y 1wz3A 79 :F T0547 77 :GG 1wz3A 81 :GK Number of specific fragments extracted= 3 number of extra gaps= 2 total=56949 # 1uvjA.70.189 read from T0547.t04.many.frag # found chain 1uvjA in template set Warning: unaligning (T0547)K76 (1uvjA)G196 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1uvjA)A198 because Y (epsilon') conformation "forbidden" or filtered. T0547 70 :RKEFGY 1uvjA 190 :YQLHQM T0547 77 :G 1uvjA 197 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=56951 # 2bryA.70.41 read from T0547.t04.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)G77 (2bryA)S41 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYK 2bryA 34 :CRALGVE T0547 78 :G 2bryA 42 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=56953 # 1pmi.70.84 read from T0547.t04.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)G78 (1pmi)E94 because Y (epsilon') conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1pmi 86 :ITKFGSSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=56954 # 1sg6A.70.62 read from T0547.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)Y75 (1sg6A)P68 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1sg6A)R71 because E (beta_S) conformation "forbidden" or filtered. T0547 70 :RKEFG 1sg6A 63 :AAEIT T0547 76 :KG 1sg6A 69 :SP Number of specific fragments extracted= 2 number of extra gaps= 2 total=56956 # 1p1jA.70.230 read from T0547.t04.many.frag # found chain 1p1jA in training set Warning: unaligning (T0547)F73 (1p1jA)N234 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKE 1p1jA 231 :KEE T0547 74 :GYKGG 1p1jA 235 :ALDKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=56958 # 1qlwA.70.141 read from T0547.t04.many.frag # found chain 1qlwA in training set Warning: unaligning (T0547)K76 (1qlwA)G148 because Y (epsilon') conformation "forbidden" or filtered. T0547 70 :RKEFGY 1qlwA 142 :WAIFRF T0547 77 :GG 1qlwA 149 :PR Number of specific fragments extracted= 2 number of extra gaps= 1 total=56960 # 1b8oA.70.177 read from T0547.t04.many.frag # found chain 1b8oA in training set Warning: unaligning (T0547)G77 (1b8oA)R185 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1b8oA)E186 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYK 1b8oA 178 :WKQMGEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=56961 # 1efyA.70.24 read from T0547.t04.many.frag # found chain 1efyA in template set T0547 70 :RKEFGYKGG 1efyA 686 :MVEFEIDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=56962 # 1fjgI.70.49 read from T0547.t04.many.frag # found chain 1fjgI in template set T0547 70 :RKEFGYKGG 1fjgI 50 :LRAVDALGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=56963 # 1kpf.71.85 read from T0547.t04.many.frag # found chain 1kpf in training set T0547 71 :KEFGYKGGF 1kpf 86 :ADLGLNKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=56964 # 1mj5A.71.93 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G78 (1mj5A)R101 because D (zeta) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1mj5A 94 :EALDLGD T0547 79 :F 1mj5A 102 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=56966 # 1uarA.71.71 read from T0547.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)G78 (1uarA)D79 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1uarA 72 :ERLGISN T0547 79 :F 1uarA 80 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=56968 # 1koe.71.31 read from T0547.t04.many.frag # found chain 1koe in training set Warning: unaligning (T0547)G78 (1koe)T176 because N (gamma') conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1koe 169 :RAVGLSG T0547 79 :F 1koe 177 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=56970 # 1mg7A.71.102 read from T0547.t04.many.frag # found chain 1mg7A in training set Warning: unaligning (T0547)G78 (1mg7A)V116 because P (beta_P) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1mg7A 109 :DQLKLHN T0547 79 :F 1mg7A 117 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=56972 # 1zwxA.71.179 read from T0547.t04.many.frag # found chain 1zwxA in template set T0547 71 :KEFGYKGGF 1zwxA 214 :AKKNIPKDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=56973 # 1wz3A.71.76 read from T0547.t04.many.frag # found chain 1wz3A in training set Warning: unaligning (T0547)G74 (1wz3A)G78 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1wz3A)D80 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1wz3A)K82 because Y (epsilon') conformation "forbidden" or filtered. T0547 71 :KEF 1wz3A 75 :NNF T0547 75 :Y 1wz3A 79 :F T0547 77 :G 1wz3A 81 :G T0547 79 :F 1wz3A 83 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=56977 # 1uekA.71.68 read from T0547.t04.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)F73 (1uekA)A71 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y75 (1uekA)Q73 because L (left) conformation "forbidden" or filtered. T0547 71 :KE 1uekA 69 :EA T0547 74 :G 1uekA 72 :G T0547 76 :KGGF 1uekA 74 :PGGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=56980 # 1kqpA.71.7 read from T0547.t04.many.frag # found chain 1kqpA in training set Warning: unaligning (T0547)F73 (1kqpA)L10 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KE 1kqpA 8 :RE T0547 74 :GYKGGF 1kqpA 11 :HVKPSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=56982 # 1pjr.71.104 read from T0547.t04.many.frag # found chain 1pjr in template set T0547 71 :KEFGYKGGF 1pjr 105 :DRIGINRNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=56983 # 1lqvA.71.84 read from T0547.t04.many.frag # found chain 1lqvA in training set Warning: unaligning (T0547)G74 (1lqvA)T88 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1lqvA)P92 because C (cis) conformation "forbidden" or filtered. T0547 71 :KEF 1lqvA 85 :QER T0547 75 :YKG 1lqvA 89 :LAF T0547 79 :F 1lqvA 93 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=56986 # 1q7lB.71.11 read from T0547.t04.many.frag # found chain 1q7lB in training set Warning: unaligning (T0547)F73 (1q7lB)M334 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1q7lB)L338 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1q7lB)E339 because D (zeta) conformation "forbidden" or filtered. T0547 71 :KE 1q7lB 332 :KD T0547 74 :GYK 1q7lB 335 :NLT T0547 79 :F 1q7lB 340 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=56989 # 2absA.71.54 read from T0547.t04.many.frag # found chain 2absA in training set Warning: unaligning (T0547)F73 (2absA)F37 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (2absA)R41 because P (beta_P) conformation "forbidden" or filtered. T0547 71 :KE 2absA 35 :DE T0547 74 :GYK 2absA 38 :FLK T0547 78 :GF 2absA 42 :GD Number of specific fragments extracted= 3 number of extra gaps= 2 total=56992 # 1gudA.71.27 read from T0547.t04.many.frag # found chain 1gudA in training set Warning: unaligning (T0547)G77 (1gudA)V34 because E (beta_S) conformation "forbidden" or filtered. T0547 71 :KEFGYK 1gudA 28 :KTLGVS T0547 78 :GF 1gudA 35 :DI Number of specific fragments extracted= 2 number of extra gaps= 1 total=56994 # 1ow1A.71.95 read from T0547.t04.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)F73 (1ow1A)M3567 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KE 1ow1A 3565 :RR T0547 74 :GYKGGF 1ow1A 3568 :TVETDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=56996 # 1bu8A.71.61 read from T0547.t04.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)G74 (1bu8A)N63 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEF 1bu8A 60 :KFS T0547 75 :YKGGF 1bu8A 64 :FQLDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=56998 # 1gvnA.71.29 read from T0547.t04.many.frag # found chain 1gvnA in template set Warning: unaligning (T0547)G78 (1gvnA)N37 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1gvnA 30 :LNHELNK T0547 79 :F 1gvnA 38 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=57000 # 1fjgI.71.50 read from T0547.t04.many.frag # found chain 1fjgI in template set T0547 71 :KEFGYKGGF 1fjgI 51 :RAVDALGRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=57001 # 2bo4A.71.54 read from T0547.t04.many.frag # found chain 2bo4A in template set T0547 71 :KEFGYKGGF 2bo4A 55 :RATGTPVSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57002 # 2aeuA.71.68 read from T0547.t04.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)G78 (2aeuA)N76 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 2aeuA 69 :KHLGGDE T0547 79 :F 2aeuA 77 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=57004 # 1pmi.71.85 read from T0547.t04.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)F73 (1pmi)F89 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1pmi)E94 because Y (epsilon') conformation "forbidden" or filtered. T0547 71 :KE 1pmi 87 :TK T0547 74 :GYKG 1pmi 90 :GSSK T0547 79 :F 1pmi 95 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=57007 # 1wu7A.71.149 read from T0547.t04.many.frag # found chain 1wu7A in template set T0547 71 :KEFGYKGGF 1wu7A 150 :DRLGLQDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=57008 # 1woyA.71.82 read from T0547.t04.many.frag # found chain 1woyA in template set T0547 71 :KEFGYKGGF 1woyA 83 :DLLGIAYDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=57009 # 1j93A.71.138 read from T0547.t04.many.frag # found chain 1j93A in template set Warning: unaligning (T0547)G77 (1j93A)A144 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1j93A)A145 because P (beta_P) conformation "forbidden" or filtered. T0547 71 :KEFGYK 1j93A 138 :KEVNNQ T0547 79 :F 1j93A 146 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=57011 # 1sg6A.71.63 read from T0547.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)Y75 (1sg6A)P68 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1sg6A)S69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1sg6A)P70 because P (beta_P) conformation "forbidden" or filtered. T0547 71 :KEFG 1sg6A 64 :AEIT T0547 78 :GF 1sg6A 71 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=57013 # 1k47A.71.79 read from T0547.t04.many.frag # found chain 1k47A in template set T0547 71 :KEFGYKGGF 1k47A 78 :AVRGQNLRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=57014 # 1uvjA.71.190 read from T0547.t04.many.frag # found chain 1uvjA in template set T0547 71 :KEFGYKGGF 1uvjA 191 :QLHQMGGAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=57015 # 2al2A.71.232 read from T0547.t04.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 T0547 71 :KE 2al2A 233 :KA T0547 75 :YKGGF 2al2A 237 :HDGKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57017 # 1w23A.71.58 read from T0547.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)G78 (1w23A)D66 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1w23A 59 :ELLQIPN T0547 79 :F 1w23A 67 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=57019 # 2b20A.71.222 read from T0547.t04.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)F73 (2b20A)Q222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (2b20A)P225 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (2b20A)P226 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (2b20A)A227 because Y (epsilon') conformation "forbidden" or filtered. T0547 71 :KE 2b20A 220 :HR T0547 74 :GY 2b20A 223 :QL T0547 79 :F 2b20A 228 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=57022 # 1kpf.72.86 read from T0547.t04.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)G77 (1kpf)K92 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFGYK 1kpf 87 :DLGLN T0547 78 :GFN 1kpf 93 :GYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=57024 # 1wz3A.72.77 read from T0547.t04.many.frag # found chain 1wz3A in training set Warning: unaligning (T0547)K76 (1wz3A)D80 because L (left) conformation "forbidden" or filtered. T0547 72 :EFGY 1wz3A 76 :NFGF T0547 77 :GGFN 1wz3A 81 :GKLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57026 # 1mj5A.72.94 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)K76 (1mj5A)G99 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1mj5A)D100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1mj5A)R101 because D (zeta) conformation "forbidden" or filtered. T0547 72 :EFGY 1mj5A 95 :ALDL T0547 79 :FN 1mj5A 102 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57028 # 1uarA.72.72 read from T0547.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)G78 (1uarA)D79 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFGYKG 1uarA 73 :RLGISN T0547 79 :FN 1uarA 80 :TT Number of specific fragments extracted= 2 number of extra gaps= 1 total=57030 # 1zwxA.72.180 read from T0547.t04.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G78 (1zwxA)D221 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFGYKG 1zwxA 215 :KKNIPK T0547 79 :FN 1zwxA 222 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=57032 # 1koe.72.32 read from T0547.t04.many.frag # found chain 1koe in training set Warning: unaligning (T0547)F73 (1koe)V171 because G (3-10) conformation "forbidden" or filtered. T0547 72 :E 1koe 170 :A T0547 74 :GYKGGFN 1koe 172 :GLSGTFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=57034 # 1ow1A.72.96 read from T0547.t04.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)G78 (1ow1A)D3572 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFGYKG 1ow1A 3566 :RMTVET T0547 79 :FN 1ow1A 3573 :YC Number of specific fragments extracted= 2 number of extra gaps= 1 total=57036 # 1mg7A.72.103 read from T0547.t04.many.frag # found chain 1mg7A in training set Warning: unaligning (T0547)G77 (1mg7A)N115 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1mg7A)V116 because P (beta_P) conformation "forbidden" or filtered. T0547 72 :EFGYK 1mg7A 110 :QLKLH T0547 79 :FN 1mg7A 117 :YE Number of specific fragments extracted= 2 number of extra gaps= 1 total=57038 # 2ex0A.72.70 read from T0547.t04.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)G77 (2ex0A)G100 because P (beta_P) conformation "forbidden" or filtered. T0547 72 :EFGYK 2ex0A 95 :LDQYP T0547 78 :GFN 2ex0A 101 :NIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=57040 # 1bu8A.72.62 read from T0547.t04.many.frag # found chain 1bu8A in training set T0547 72 :EFGYKGGFN 1bu8A 61 :FSNFQLDRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57041 # 1pjr.72.105 read from T0547.t04.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)K76 (1pjr)N110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1pjr)N112 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFGY 1pjr 106 :RIGI T0547 77 :G 1pjr 111 :R T0547 79 :FN 1pjr 113 :FS Number of specific fragments extracted= 3 number of extra gaps= 2 total=57044 # 1wu7A.72.150 read from T0547.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)Y75 (1wu7A)L154 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFG 1wu7A 151 :RLG T0547 76 :KGGFN 1wu7A 155 :QDIYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=57046 # 1qwnA.72.116 read from T0547.t04.many.frag # found chain 1qwnA in training set T0547 72 :EFGYKGGFN 1qwnA 117 :HLHDNPEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57047 # 1fjgI.72.51 read from T0547.t04.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)Y75 (1fjgI)A55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1fjgI)L56 because T (delta_L) conformation "forbidden" or filtered. T0547 72 :EFG 1fjgI 52 :AVD T0547 77 :GGFN 1fjgI 57 :GRFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=57049 # 1uekA.72.69 read from T0547.t04.many.frag # found chain 1uekA in training set T0547 72 :EFGYKGGFN 1uekA 70 :AAGQPGGVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=57050 # 1vefA.72.96 read from T0547.t04.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)G74 (1vefA)I99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1vefA)N105 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EF 1vefA 97 :TA T0547 75 :YKGGF 1vefA 100 :LPPEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=57052 # 1w23A.72.59 read from T0547.t04.many.frag # found chain 1w23A in training set T0547 72 :EFGYKGGFN 1w23A 60 :LLQIPNDYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=57053 # 2absA.72.55 read from T0547.t04.many.frag # found chain 2absA in training set T0547 72 :EFGYKGGFN 2absA 36 :EFFLKRGDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57054 # 2aeuA.72.69 read from T0547.t04.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)G78 (2aeuA)N76 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFGYKG 2aeuA 70 :HLGGDE T0547 79 :FN 2aeuA 77 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=57056 # 2al2A.72.233 read from T0547.t04.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 Warning: unaligning (T0547)G78 (2al2A)K240 because G (3-10) conformation "forbidden" or filtered. T0547 72 :E 2al2A 234 :A T0547 75 :YKG 2al2A 237 :HDG T0547 79 :FN 2al2A 241 :VK Number of specific fragments extracted= 3 number of extra gaps= 2 total=57059 # 1lqvA.72.85 read from T0547.t04.many.frag # found chain 1lqvA in training set Warning: unaligning (T0547)G74 (1lqvA)T88 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1lqvA)P92 because C (cis) conformation "forbidden" or filtered. T0547 72 :EF 1lqvA 86 :ER T0547 75 :YKG 1lqvA 89 :LAF T0547 79 :FN 1lqvA 93 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=57062 # 1kqpA.72.8 read from T0547.t04.many.frag # found chain 1kqpA in training set T0547 72 :EFGYKGGFN 1kqpA 9 :ELHVKPSID Number of specific fragments extracted= 1 number of extra gaps= 0 total=57063 # 1j93A.72.139 read from T0547.t04.many.frag # found chain 1j93A in template set Warning: unaligning (T0547)G77 (1j93A)A144 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1j93A)L147 because E (beta_S) conformation "forbidden" or filtered. T0547 72 :EFGYK 1j93A 139 :EVNNQ T0547 78 :GF 1j93A 145 :AV Number of specific fragments extracted= 2 number of extra gaps= 2 total=57065 # 1sg6A.72.64 read from T0547.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)G74 (1sg6A)T67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y75 (1sg6A)P68 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1sg6A)P70 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1sg6A)R71 because E (beta_S) conformation "forbidden" or filtered. T0547 72 :EF 1sg6A 65 :EI T0547 76 :K 1sg6A 69 :S T0547 79 :FN 1sg6A 72 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=57068 # 1dqzA.72.54 read from T0547.t04.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)G74 (1dqzA)Y59 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EF 1dqzA 57 :EE T0547 75 :YKGGFN 1dqzA 60 :YQSGLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=57070 # 1oe4A.72.20 read from T0547.t04.many.frag # found chain 1oe4A in template set Warning: unaligning (T0547)K76 because of BadResidue code BAD_PEPTIDE in next template residue (1oe4A)D60 Warning: unaligning (T0547)G77 because of BadResidue code BAD_PEPTIDE at template residue (1oe4A)D60 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE at template residue (1oe4A)P61 T0547 72 :EFGY 1oe4A 55 :NLVF T0547 79 :FN 1oe4A 62 :VQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=57072 # 1vd6A.72.87 read from T0547.t04.many.frag # found chain 1vd6A in training set T0547 72 :EFGYKGGFN 1vd6A 88 :LKEAFPQAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57073 # 2b0tA.72.69 read from T0547.t04.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)G78 (2b0tA)A76 because P (beta_P) conformation "forbidden" or filtered. T0547 72 :EFGYKG 2b0tA 70 :LAKTPE T0547 79 :FN 2b0tA 77 :NI Number of specific fragments extracted= 2 number of extra gaps= 1 total=57075 # 2bo4A.72.55 read from T0547.t04.many.frag # found chain 2bo4A in template set Warning: unaligning (T0547)G78 (2bo4A)S62 because E (beta_S) conformation "forbidden" or filtered. T0547 72 :EFGYKG 2bo4A 56 :ATGTPV T0547 79 :FN 2bo4A 63 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=57077 # 1o0sA.72.258 read from T0547.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)K76 (1o0sA)G263 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1o0sA)K265 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFGY 1o0sA 259 :TKKY T0547 77 :G 1o0sA 264 :Q T0547 79 :FN 1o0sA 266 :TL Number of specific fragments extracted= 3 number of extra gaps= 2 total=57080 # 1kpf.73.87 read from T0547.t04.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)G77 (1kpf)K92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1kpf)G93 because S (epsilon) conformation "forbidden" or filtered. T0547 73 :FGYK 1kpf 88 :LGLN T0547 79 :FNA 1kpf 94 :YRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=57082 # 1wz3A.73.78 read from T0547.t04.many.frag # found chain 1wz3A in training set Warning: unaligning (T0547)F73 (1wz3A)F77 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1wz3A)D80 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1wz3A)K82 because Y (epsilon') conformation "forbidden" or filtered. T0547 74 :GY 1wz3A 78 :GF T0547 77 :G 1wz3A 81 :G T0547 79 :FNA 1wz3A 83 :LVV Number of specific fragments extracted= 3 number of extra gaps= 3 total=57085 # 1uarA.73.73 read from T0547.t04.many.frag # found chain 1uarA in training set T0547 73 :FGYKGGFNA 1uarA 74 :LGISNDTTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57086 # 2ex0A.73.71 read from T0547.t04.many.frag # found chain 2ex0A in training set T0547 73 :FGYKGGFNA 2ex0A 96 :DQYPGNIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57087 # 1mj5A.73.95 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)A81 (1mj5A)L104 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :FGYKGGFN 1mj5A 96 :LDLGDRVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=57088 # 1ow1A.73.97 read from T0547.t04.many.frag # found chain 1ow1A in training set T0547 73 :FGYKGGFNA 1ow1A 3567 :MTVETDYCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57089 # 1zwxA.73.181 read from T0547.t04.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G78 (1zwxA)D221 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FGYKG 1zwxA 216 :KNIPK T0547 79 :FNA 1zwxA 222 :EII Number of specific fragments extracted= 2 number of extra gaps= 1 total=57091 # 1bu8A.73.63 read from T0547.t04.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)G74 (1bu8A)N63 because G (3-10) conformation "forbidden" or filtered. T0547 73 :F 1bu8A 62 :S T0547 75 :YKGGFNA 1bu8A 64 :FQLDRKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=57093 # 1qwnA.73.117 read from T0547.t04.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)K76 (1qwnA)N121 because D (zeta) conformation "forbidden" or filtered. T0547 73 :FGY 1qwnA 118 :LHD T0547 77 :GGFNA 1qwnA 122 :PEMKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=57095 # 1koe.73.33 read from T0547.t04.many.frag # found chain 1koe in training set Warning: unaligning (T0547)G77 (1koe)G175 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1koe)T176 because N (gamma') conformation "forbidden" or filtered. T0547 73 :FGYK 1koe 171 :VGLS T0547 79 :FNA 1koe 177 :FRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=57097 # 1vefA.73.97 read from T0547.t04.many.frag # found chain 1vefA in training set T0547 73 :FGYKGGFNA 1vefA 98 :AILPPELNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=57098 # 1vd6A.73.88 read from T0547.t04.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)G78 (1vd6A)Q94 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FGYKG 1vd6A 89 :KEAFP T0547 79 :FNA 1vd6A 95 :AVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=57100 # 1w23A.73.60 read from T0547.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)K76 (1w23A)P64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1w23A)Q68 because E (beta_S) conformation "forbidden" or filtered. T0547 73 :FGY 1w23A 61 :LQI T0547 77 :GGF 1w23A 65 :NDY T0547 81 :A 1w23A 69 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=57103 # 1pjr.73.106 read from T0547.t04.many.frag # found chain 1pjr in template set T0547 73 :FGYKGGFNA 1pjr 107 :IGINRNFSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=57104 # 1uekA.73.70 read from T0547.t04.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)Y75 (1uekA)Q73 because L (left) conformation "forbidden" or filtered. T0547 73 :FG 1uekA 71 :AG T0547 76 :KGGFNA 1uekA 74 :PGGVRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=57106 # 1wu7A.73.151 read from T0547.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)F73 (1wu7A)L152 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1wu7A)Q155 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1wu7A)I157 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GY 1wu7A 153 :GL T0547 77 :G 1wu7A 156 :D T0547 79 :FNA 1wu7A 158 :YEI Number of specific fragments extracted= 3 number of extra gaps= 3 total=57109 # 1sg6A.73.65 read from T0547.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)Y75 (1sg6A)P68 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1sg6A)P70 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1sg6A)R71 because E (beta_S) conformation "forbidden" or filtered. T0547 73 :FG 1sg6A 66 :IT T0547 76 :K 1sg6A 69 :S T0547 79 :FNA 1sg6A 72 :LLI Number of specific fragments extracted= 3 number of extra gaps= 2 total=57112 # 1vi6A.73.63 read from T0547.t04.many.frag # found chain 1vi6A in template set Warning: unaligning (T0547)K76 (1vi6A)E66 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :FGY 1vi6A 63 :SRY T0547 77 :GGFNA 1vi6A 67 :PSKIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=57114 # 1o0sA.73.259 read from T0547.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)K76 (1o0sA)G263 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1o0sA)K265 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FGY 1o0sA 260 :KKY T0547 77 :G 1o0sA 264 :Q T0547 79 :FNA 1o0sA 266 :TLI Number of specific fragments extracted= 3 number of extra gaps= 2 total=57117 # 1dqzA.73.55 read from T0547.t04.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)K76 (1dqzA)Q61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1dqzA)S62 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FGY 1dqzA 58 :EYY T0547 78 :GFNA 1dqzA 63 :GLSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57119 # 1fjgI.73.52 read from T0547.t04.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)Y75 (1fjgI)A55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1fjgI)L56 because T (delta_L) conformation "forbidden" or filtered. T0547 73 :FG 1fjgI 53 :VD T0547 77 :GGFNA 1fjgI 57 :GRFDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=57121 # 2absA.73.56 read from T0547.t04.many.frag # found chain 2absA in training set Warning: unaligning (T0547)K76 (2absA)K40 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :FGY 2absA 37 :FFL T0547 77 :GGFNA 2absA 41 :RGDAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=57123 # 1onrA.73.120 read from T0547.t04.many.frag # found chain 1onrA in template set T0547 73 :FGYKGGFNA 1onrA 122 :AGISNDRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57124 # 1pg4A.73.126 read from T0547.t04.many.frag # found chain 1pg4A in training set Warning: unaligning (T0547)G77 (1pg4A)K131 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1pg4A)V134 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :FGYK 1pg4A 127 :LGIK T0547 78 :GF 1pg4A 132 :GD T0547 81 :A 1pg4A 135 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=57127 # 2aeuA.73.70 read from T0547.t04.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)K76 (2aeuA)D74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (2aeuA)N76 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FGY 2aeuA 71 :LGG T0547 77 :G 2aeuA 75 :E T0547 79 :FNA 2aeuA 77 :DKC Number of specific fragments extracted= 3 number of extra gaps= 2 total=57130 # 2al2A.73.234 read from T0547.t04.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 Warning: unaligning (T0547)G78 (2al2A)K240 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (2al2A)K242 because P (beta_P) conformation "forbidden" or filtered. T0547 75 :YKG 2al2A 237 :HDG T0547 79 :F 2al2A 241 :V T0547 81 :A 2al2A 243 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=57133 # 1xeaA.73.21 read from T0547.t04.many.frag # found chain 1xeaA in template set Warning: unaligning (T0547)K76 (1xeaA)W25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1xeaA)P26 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :FGY 1xeaA 22 :LAQ T0547 78 :GFNA 1xeaA 27 :DIEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=57135 # 2b20A.73.224 read from T0547.t04.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)F73 (2b20A)Q222 because L (left) conformation "forbidden" or filtered. T0547 74 :GYKGGFNA 2b20A 223 :QLPPAVYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=57136 # 1oe4A.73.21 read from T0547.t04.many.frag # found chain 1oe4A in template set Warning: unaligning (T0547)K76 because of BadResidue code BAD_PEPTIDE in next template residue (1oe4A)D60 Warning: unaligning (T0547)G77 because of BadResidue code BAD_PEPTIDE at template residue (1oe4A)D60 Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE at template residue (1oe4A)P61 Warning: unaligning (T0547)A81 (1oe4A)Y64 because E (beta_S) conformation "forbidden" or filtered. T0547 73 :FGY 1oe4A 56 :LVF T0547 79 :FN 1oe4A 62 :VQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=57138 # 1j93A.73.140 read from T0547.t04.many.frag # found chain 1j93A in template set Warning: unaligning (T0547)Y75 (1j93A)N142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1j93A)A144 because Y (epsilon') conformation "forbidden" or filtered. T0547 73 :FG 1j93A 140 :VN T0547 76 :K 1j93A 143 :Q T0547 78 :GFNA 1j93A 145 :AVLG Number of specific fragments extracted= 3 number of extra gaps= 2 total=57141 # 1ow1A.74.98 read from T0547.t04.many.frag # found chain 1ow1A in training set T0547 74 :GYKGGFNAV 1ow1A 3568 :TVETDYCLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57142 # 1wz3A.74.79 read from T0547.t04.many.frag # found chain 1wz3A in training set Warning: unaligning (T0547)K76 (1wz3A)D80 because L (left) conformation "forbidden" or filtered. T0547 74 :GY 1wz3A 78 :GF T0547 77 :GGFNAV 1wz3A 81 :GKLVVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=57144 # 1kpf.74.88 read from T0547.t04.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)G77 (1kpf)K92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1kpf)R95 because E (beta_S) conformation "forbidden" or filtered. T0547 74 :GYK 1kpf 89 :GLN T0547 78 :GF 1kpf 93 :GY T0547 81 :AV 1kpf 96 :MV Number of specific fragments extracted= 3 number of extra gaps= 2 total=57147 # 1vd6A.74.89 read from T0547.t04.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)G78 (1vd6A)Q94 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKG 1vd6A 90 :EAFP T0547 79 :FNAV 1vd6A 95 :AVFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=57149 # 1vefA.74.98 read from T0547.t04.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)N80 (1vefA)N105 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKGGF 1vefA 99 :ILPPEL T0547 81 :AV 1vefA 106 :RV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57151 # 1mj5A.74.96 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)K76 (1mj5A)G99 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1mj5A)R101 because D (zeta) conformation "forbidden" or filtered. T0547 74 :GY 1mj5A 97 :DL T0547 77 :G 1mj5A 100 :D T0547 79 :FNAV 1mj5A 102 :VVLV Number of specific fragments extracted= 3 number of extra gaps= 2 total=57154 # 2ex0A.74.72 read from T0547.t04.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)G77 (2ex0A)G100 because P (beta_P) conformation "forbidden" or filtered. T0547 74 :GYK 2ex0A 97 :QYP T0547 78 :GFNAV 2ex0A 101 :NIELN Number of specific fragments extracted= 2 number of extra gaps= 1 total=57156 # 1uarA.74.74 read from T0547.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)G78 (1uarA)D79 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKG 1uarA 75 :GISN T0547 79 :FNAV 1uarA 80 :TTVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57158 # 1bu8A.74.64 read from T0547.t04.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)G74 (1bu8A)N63 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1bu8A)D67 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKG 1bu8A 64 :FQL T0547 79 :FNAV 1bu8A 68 :RKTR Number of specific fragments extracted= 2 number of extra gaps= 2 total=57160 # 1w23A.74.61 read from T0547.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)G78 (1w23A)D66 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKG 1w23A 62 :QIPN T0547 79 :FNAV 1w23A 67 :YQIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=57162 # 1zwxA.74.182 read from T0547.t04.many.frag # found chain 1zwxA in template set T0547 74 :GYKGGFNAV 1zwxA 217 :NIPKDEIIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=57163 # 1o0sA.74.260 read from T0547.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)Y75 (1o0sA)Y262 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1o0sA)K265 because G (3-10) conformation "forbidden" or filtered. T0547 74 :G 1o0sA 261 :K T0547 76 :KG 1o0sA 263 :GQ T0547 79 :FNAV 1o0sA 266 :TLIQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=57166 # 1qwnA.74.118 read from T0547.t04.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G78 (1qwnA)E123 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKG 1qwnA 119 :HDNP T0547 79 :FNAV 1qwnA 124 :MKFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=57168 # 1dqzA.74.56 read from T0547.t04.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)K76 (1dqzA)Q61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1dqzA)V66 because E (beta_S) conformation "forbidden" or filtered. T0547 74 :GY 1dqzA 59 :YY T0547 77 :GGFN 1dqzA 62 :SGLS T0547 82 :V 1dqzA 67 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=57171 # 2c5qA.74.68 read from T0547.t04.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)G77 (2c5qA)P72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE in next template residue (2c5qA)I75 Warning: unaligning (T0547)N80 because of BadResidue code BAD_PEPTIDE at template residue (2c5qA)I75 T0547 74 :GYK 2c5qA 69 :SVP T0547 78 :G 2c5qA 73 :N T0547 81 :AV 2c5qA 76 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=57174 # 1vi6A.74.64 read from T0547.t04.many.frag # found chain 1vi6A in template set Warning: unaligning (T0547)K76 (1vi6A)E66 because P (beta_P) conformation "forbidden" or filtered. T0547 74 :GY 1vi6A 64 :RY T0547 77 :GGFNAV 1vi6A 67 :PSKILL Number of specific fragments extracted= 2 number of extra gaps= 1 total=57176 # 1pjr.74.20 read from T0547.t04.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)G74 (1pjr)R21 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKGGFNAV 1pjr 22 :TTEGPLLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=57177 # 1fjgI.74.53 read from T0547.t04.many.frag # found chain 1fjgI in template set T0547 74 :GYKGGFNAV 1fjgI 54 :DALGRFDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=57178 # 2a5yB.74.148 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)G74 (2a5yB)D149 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKGGFNAV 2a5yB 150 :LDSFFLFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=57179 # 1onrA.74.121 read from T0547.t04.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)K76 (1onrA)S125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1onrA)L130 because E (beta_S) conformation "forbidden" or filtered. T0547 74 :GY 1onrA 123 :GI T0547 77 :GGFN 1onrA 126 :NDRI T0547 82 :V 1onrA 131 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=57182 # 1koe.74.34 read from T0547.t04.many.frag # found chain 1koe in training set Warning: unaligning (T0547)G78 (1koe)T176 because N (gamma') conformation "forbidden" or filtered. T0547 74 :GYKG 1koe 172 :GLSG T0547 79 :FNAV 1koe 177 :FRAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=57184 # 1sg6A.74.66 read from T0547.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)G74 (1sg6A)T67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y75 (1sg6A)P68 because C (cis) conformation "forbidden" or filtered. T0547 76 :KGGFNAV 1sg6A 69 :SPRLLIY Number of specific fragments extracted= 1 number of extra gaps= 1 total=57185 # 1pjr.74.107 read from T0547.t04.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)G78 (1pjr)N112 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKG 1pjr 108 :GINR T0547 79 :FNAV 1pjr 113 :FSIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=57187 # 1kcqA.74.66 read from T0547.t04.many.frag # found chain 1kcqA in training set Warning: unaligning (T0547)K76 (1kcqA)S226 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1kcqA)R228 because N (gamma') conformation "forbidden" or filtered. T0547 74 :GY 1kcqA 224 :ER T0547 77 :G 1kcqA 227 :G T0547 79 :FNAV 1kcqA 229 :ARVH Number of specific fragments extracted= 3 number of extra gaps= 2 total=57190 # 1wu7A.74.152 read from T0547.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G78 (1wu7A)I157 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKG 1wu7A 153 :GLQD T0547 79 :FNAV 1wu7A 158 :YEIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=57192 # 1bjt.74.54 read from T0547.t04.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)G77 (1bjt)R466 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYK 1bjt 463 :VVG T0547 78 :GFNAV 1bjt 467 :DYYGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=57194 # 1pg4A.74.127 read from T0547.t04.many.frag # found chain 1pg4A in training set T0547 74 :GYKGGFNAV 1pg4A 128 :GIKKGDVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57195 # 1j93A.74.141 read from T0547.t04.many.frag # found chain 1j93A in template set Warning: unaligning (T0547)Y75 (1j93A)N142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1j93A)L147 because E (beta_S) conformation "forbidden" or filtered. T0547 74 :G 1j93A 141 :N T0547 76 :KGGF 1j93A 143 :QAAV T0547 81 :AV 1j93A 148 :GF Number of specific fragments extracted= 3 number of extra gaps= 2 total=57198 # 1xeaA.74.22 read from T0547.t04.many.frag # found chain 1xeaA in template set Warning: unaligning (T0547)K76 (1xeaA)W25 because P (beta_P) conformation "forbidden" or filtered. T0547 74 :GY 1xeaA 23 :AQ T0547 77 :GGFNAV 1xeaA 26 :PDIELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57200 # 1g8kA.74.289 read from T0547.t04.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)Y75 (1g8kA)A291 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1g8kA)G292 because S (epsilon) conformation "forbidden" or filtered. T0547 74 :G 1g8kA 290 :V T0547 77 :GGFNAV 1g8kA 293 :NDRVLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=57202 # 1vd6A.75.90 read from T0547.t04.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)G78 (1vd6A)Q94 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKG 1vd6A 91 :AFP T0547 79 :FNAVY 1vd6A 95 :AVFNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57204 # 1vefA.75.99 read from T0547.t04.many.frag # found chain 1vefA in training set T0547 75 :YKGGFNAVY 1vefA 100 :LPPELNRVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=57205 # 1uarA.75.75 read from T0547.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)G78 (1uarA)D79 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKG 1uarA 76 :ISN T0547 79 :FNAVY 1uarA 80 :TTVVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=57207 # 1ow1A.75.99 read from T0547.t04.many.frag # found chain 1ow1A in training set T0547 75 :YKGGFNAVY 1ow1A 3569 :VETDYCLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57208 # 1bu8A.75.65 read from T0547.t04.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)G78 (1bu8A)D67 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKG 1bu8A 64 :FQL T0547 79 :FNAVY 1bu8A 68 :RKTRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=57210 # 1bjt.75.55 read from T0547.t04.many.frag # found chain 1bjt in template set T0547 75 :YKGGFNAVY 1bjt 464 :VGRDYYGCY Number of specific fragments extracted= 1 number of extra gaps= 0 total=57211 # 1qwnA.75.119 read from T0547.t04.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G78 (1qwnA)E123 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKG 1qwnA 120 :DNP T0547 79 :FNAVY 1qwnA 124 :MKFIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=57213 # 1dqzA.75.57 read from T0547.t04.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)K76 (1dqzA)Q61 because L (left) conformation "forbidden" or filtered. T0547 75 :Y 1dqzA 60 :Y T0547 77 :GGFNAVY 1dqzA 62 :SGLSVIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=57215 # 1pjr.75.21 read from T0547.t04.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)A81 (1pjr)L28 because E (beta_S) conformation "forbidden" or filtered. T0547 75 :YKGGFN 1pjr 22 :TTEGPL T0547 82 :VY 1pjr 29 :IM Number of specific fragments extracted= 2 number of extra gaps= 1 total=57217 # 1w23A.75.62 read from T0547.t04.many.frag # found chain 1w23A in training set T0547 75 :YKGGFNAVY 1w23A 63 :IPNDYQILF Number of specific fragments extracted= 1 number of extra gaps= 0 total=57218 # 1ryoA.75.29 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)G78 (1ryoA)D33 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKG 1ryoA 30 :IPS T0547 79 :FNAVY 1ryoA 34 :GPSVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=57220 # 1g8kA.75.290 read from T0547.t04.many.frag # found chain 1g8kA in training set T0547 75 :YKGGFNAVY 1g8kA 291 :AGNDRVLHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57221 # 1mj5A.75.97 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)A81 (1mj5A)L104 because P (beta_P) conformation "forbidden" or filtered. T0547 75 :YKGGFN 1mj5A 98 :LGDRVV T0547 82 :VY 1mj5A 105 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57223 # 1wz3A.75.80 read from T0547.t04.many.frag # found chain 1wz3A in training set Warning: unaligning (T0547)K76 (1wz3A)D80 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1wz3A)K82 because Y (epsilon') conformation "forbidden" or filtered. T0547 75 :Y 1wz3A 79 :F T0547 77 :G 1wz3A 81 :G T0547 79 :FNAVY 1wz3A 83 :LVVNY Number of specific fragments extracted= 3 number of extra gaps= 2 total=57226 # 2ex0A.75.73 read from T0547.t04.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)Y75 (2ex0A)Y98 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (2ex0A)G100 because P (beta_P) conformation "forbidden" or filtered. T0547 76 :K 2ex0A 99 :P T0547 78 :GFNAVY 2ex0A 101 :NIELNI Number of specific fragments extracted= 2 number of extra gaps= 2 total=57228 # 1wdaA.75.307 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G78 (1wdaA)P304 because P (beta_P) conformation "forbidden" or filtered. T0547 75 :YKG 1wdaA 301 :NTQ T0547 79 :FNAVY 1wdaA 305 :PQEVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=57230 # 1zz1A.75.125 read from T0547.t04.many.frag # found chain 1zz1A in training set T0547 75 :YKGGFNAVY 1zz1A 126 :ATGELSAGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=57231 # 1o0sA.75.261 read from T0547.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)G78 (1o0sA)K265 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKG 1o0sA 262 :YGQ T0547 79 :FNAVY 1o0sA 266 :TLIQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=57233 # 7odcA.75.57 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G78 (7odcA)R61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (7odcA)P64 because P (beta_P) conformation "forbidden" or filtered. T0547 75 :YKG 7odcA 58 :ALP T0547 79 :FN 7odcA 62 :VT T0547 82 :VY 7odcA 65 :FY Number of specific fragments extracted= 3 number of extra gaps= 2 total=57236 # 1q2lA.75.504 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 75 :YKGGFNAVY 1q2lA 528 :DESNLRVVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=57237 # 2b8mA.75.88 read from T0547.t04.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)K76 (2b8mA)N89 because G (3-10) conformation "forbidden" or filtered. T0547 75 :Y 2b8mA 88 :I T0547 77 :GGFNAVY 2b8mA 90 :SDILEFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=57239 # 1kpf.75.89 read from T0547.t04.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)G77 (1kpf)K92 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YK 1kpf 90 :LN T0547 78 :GFNAVY 1kpf 93 :GYRMVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57241 # 2a5yB.75.149 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)G77 (2a5yB)S152 because Y (epsilon') conformation "forbidden" or filtered. T0547 75 :YK 2a5yB 150 :LD T0547 78 :GFNAVY 2a5yB 153 :FFLFLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=57243 # 2c5qA.75.69 read from T0547.t04.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)G77 (2c5qA)P72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE in next template residue (2c5qA)I75 Warning: unaligning (T0547)N80 because of BadResidue code BAD_PEPTIDE at template residue (2c5qA)I75 T0547 75 :YK 2c5qA 70 :VP T0547 78 :G 2c5qA 73 :N T0547 81 :AVY 2c5qA 76 :LVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=57246 # 1zwxA.75.183 read from T0547.t04.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G78 (1zwxA)D221 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKG 1zwxA 218 :IPK T0547 79 :FNAVY 1zwxA 222 :EIIFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=57248 # 1s95A.75.64 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)G78 (1s95A)T234 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKG 1s95A 231 :LKE T0547 79 :FNAVY 1s95A 235 :EKITV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57250 # 1vi6A.75.65 read from T0547.t04.many.frag # found chain 1vi6A in template set Warning: unaligning (T0547)N80 (1vi6A)I70 because E (beta_S) conformation "forbidden" or filtered. T0547 75 :YKGGF 1vi6A 65 :YEPSK T0547 81 :AVY 1vi6A 71 :LLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57252 # 2aebA.75.88 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)A81 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. T0547 75 :YKGGFN 2aebA 89 :KNGRIS T0547 82 :VY 2aebA 96 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=57254 # 1n55A.75.33 read from T0547.t04.many.frag # found chain 1n55A in training set Warning: unaligning (T0547)G77 (1n55A)H35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1n55A)D36 because N (gamma') conformation "forbidden" or filtered. T0547 75 :YK 1n55A 33 :IS T0547 79 :FNAVY 1n55A 37 :VQCVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57256 # 2fn0A.75.189 read from T0547.t04.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)F79 (2fn0A)Y191 because Y (epsilon') conformation "forbidden" or filtered. T0547 75 :YKGG 2fn0A 187 :RRGE T0547 80 :NAVY 2fn0A 192 :VKVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=57258 # 1bjt.76.56 read from T0547.t04.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)G77 (1bjt)R466 because G (3-10) conformation "forbidden" or filtered. T0547 76 :K 1bjt 465 :G T0547 78 :GFNAVYP 1bjt 467 :DYYGCYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=57260 # 1bu8A.76.66 read from T0547.t04.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)P84 (1bu8A)I73 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 1bu8A 65 :QLDRKTRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=57261 # 1vefA.76.100 read from T0547.t04.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)N80 (1vefA)N105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1vefA)R106 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGF 1vefA 101 :PPEL T0547 82 :VYP 1vefA 107 :VFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=57263 # 7odcA.76.58 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K76 (7odcA)L59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (7odcA)T63 because P (beta_P) conformation "forbidden" or filtered. T0547 77 :GGF 7odcA 60 :PRV T0547 81 :AVYP 7odcA 64 :PFYA Number of specific fragments extracted= 2 number of extra gaps= 2 total=57265 # 1qwnA.76.120 read from T0547.t04.many.frag # found chain 1qwnA in training set T0547 76 :KGGFNAVYP 1qwnA 121 :NPEMKFIWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57266 # 1vd6A.76.91 read from T0547.t04.many.frag # found chain 1vd6A in training set T0547 76 :KGGFNAVYP 1vd6A 92 :FPQAVFNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=57267 # 1wdaA.76.308 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G78 (1wdaA)P304 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KG 1wdaA 302 :TQ T0547 79 :FNAVY 1wdaA 305 :PQEVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=57269 # 1uarA.76.76 read from T0547.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)G78 (1uarA)D79 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1uarA)Y85 because Y (epsilon') conformation "forbidden" or filtered. T0547 76 :KG 1uarA 77 :SN T0547 79 :FNAVY 1uarA 80 :TTVVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=57271 # 1s95A.76.65 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 1s95A 232 :KETEKITV Number of specific fragments extracted= 1 number of extra gaps= 1 total=57272 # 1zz1A.76.126 read from T0547.t04.many.frag # found chain 1zz1A in training set T0547 76 :KGGFNAVYP 1zz1A 127 :TGELSAGYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57273 # 2b8mA.76.89 read from T0547.t04.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)P84 (2b8mA)V97 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 2b8mA 89 :NSDILEFF Number of specific fragments extracted= 1 number of extra gaps= 1 total=57274 # 1j0dA.76.27 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)A81 (1j0dA)N33 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1j0dA)A36 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFN 1j0dA 28 :LGSKV T0547 82 :VY 1j0dA 34 :VY Number of specific fragments extracted= 2 number of extra gaps= 2 total=57276 # 1dqzA.76.58 read from T0547.t04.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)K76 (1dqzA)Q61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1dqzA)S62 because G (3-10) conformation "forbidden" or filtered. T0547 78 :GFNAVYP 1dqzA 63 :GLSVIMP Number of specific fragments extracted= 1 number of extra gaps= 1 total=57277 # 1vchA.76.49 read from T0547.t04.many.frag # found chain 1vchA in template set Warning: unaligning (T0547)A81 (1vchA)I55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1vchA)T58 because Y (epsilon') conformation "forbidden" or filtered. T0547 76 :KGGFN 1vchA 50 :PKEAE T0547 82 :VY 1vchA 56 :LF Number of specific fragments extracted= 2 number of extra gaps= 2 total=57279 # 1pjr.76.22 read from T0547.t04.many.frag # found chain 1pjr in template set T0547 76 :KGGFNAVYP 1pjr 23 :TEGPLLIMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57280 # 1ryoA.76.30 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)G78 (1ryoA)D33 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KG 1ryoA 31 :PS T0547 79 :FNAVY 1ryoA 34 :GPSVA Number of specific fragments extracted= 2 number of extra gaps= 2 total=57282 # 1ow1A.76.100 read from T0547.t04.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)G78 (1ow1A)D3572 because G (3-10) conformation "forbidden" or filtered. T0547 76 :KG 1ow1A 3570 :ET T0547 79 :FNAVYP 1ow1A 3573 :YCLLLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=57284 # 2f2hA.76.232 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)G78 (2f2hA)E235 because G (3-10) conformation "forbidden" or filtered. T0547 76 :KG 2f2hA 233 :ES T0547 79 :FNAVYP 2f2hA 236 :YLEYFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57286 # 1jftA.76.111 read from T0547.t04.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)G77 (1jftA)K114 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1jftA)G118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1jftA)V121 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :K 1jftA 113 :Q T0547 78 :GFN 1jftA 115 :RVD T0547 82 :VY 1jftA 119 :LL Number of specific fragments extracted= 3 number of extra gaps= 3 total=57289 # 1g8kA.76.291 read from T0547.t04.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)K76 (1g8kA)G292 because S (epsilon) conformation "forbidden" or filtered. T0547 77 :GGFNAVYP 1g8kA 293 :NDRVLHLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=57290 # 1w23A.76.63 read from T0547.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)K76 (1w23A)P64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1w23A)L72 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1w23A 65 :NDYQILF Number of specific fragments extracted= 1 number of extra gaps= 2 total=57291 # 1o08A.76.104 read from T0547.t04.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)G77 (1o08A)N1106 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 76 :K 1o08A 1105 :S T0547 78 :GFNAVY 1o08A 1107 :KIKIAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=57293 # 1q2lA.76.505 read from T0547.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)G78 (1q2lA)N531 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1q2lA)A537 because Y (epsilon') conformation "forbidden" or filtered. T0547 76 :KG 1q2lA 529 :ES T0547 79 :FNAVY 1q2lA 532 :LRVVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=57295 # 1n55A.76.34 read from T0547.t04.many.frag # found chain 1n55A in training set Warning: unaligning (T0547)G77 (1n55A)H35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1n55A)D36 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1n55A)A42 because D (zeta) conformation "forbidden" or filtered. T0547 76 :K 1n55A 34 :S T0547 79 :FNAVY 1n55A 37 :VQCVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=57297 # 1nar.76.74 read from T0547.t04.many.frag # found chain 1nar in training set Warning: unaligning (T0547)P84 (1nar)S83 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 1nar 75 :HPEVKVVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=57298 # 2aebA.76.89 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)G78 (2aebA)R92 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 T0547 76 :KG 2aebA 90 :NG T0547 79 :FN 2aebA 93 :IS T0547 82 :VY 2aebA 96 :VL Number of specific fragments extracted= 3 number of extra gaps= 3 total=57301 # 1zhaA.76.32 read from T0547.t04.many.frag # found chain 1zhaA in template set Warning: unaligning (T0547)G78 (1zhaA)E1035 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1zhaA)K1041 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KG 1zhaA 1033 :FK T0547 79 :FNAVY 1zhaA 1036 :VEFVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=57303 # 1ej0A.76.20 read from T0547.t04.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)A81 (1ej0A)V55 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFN 1ej0A 50 :KPGMT T0547 82 :VYP 1ej0A 56 :VDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=57305 # 1vi6A.76.66 read from T0547.t04.many.frag # found chain 1vi6A in template set Warning: unaligning (T0547)F79 (1vi6A)K69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1vi6A)I70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1vi6A)L71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1vi6A)A74 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGG 1vi6A 66 :EPS T0547 82 :VY 1vi6A 72 :LV Number of specific fragments extracted= 2 number of extra gaps= 2 total=57307 # 1onrA.76.123 read from T0547.t04.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)P84 (1onrA)L133 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 1onrA 125 :SNDRILIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=57308 # 7odcA.77.59 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G78 (7odcA)R61 because G (3-10) conformation "forbidden" or filtered. T0547 77 :G 7odcA 60 :P T0547 79 :FNAVYPL 7odcA 62 :VTPFYAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57310 # 1bjt.77.57 read from T0547.t04.many.frag # found chain 1bjt in template set T0547 77 :GGFNAVYPL 1bjt 466 :RDYYGCYPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57311 # 1vefA.77.101 read from T0547.t04.many.frag # found chain 1vefA in training set T0547 77 :GGFNAVYPL 1vefA 102 :PELNRVFPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57312 # 1wdaA.77.309 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1wdaA 303 :QPPQEVY T0547 85 :L 1wdaA 311 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=57314 # 1qwnA.77.121 read from T0547.t04.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G78 (1qwnA)E123 because G (3-10) conformation "forbidden" or filtered. T0547 77 :G 1qwnA 122 :P T0547 79 :FNAVYPL 1qwnA 124 :MKFIWAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=57316 # 1jftA.77.112 read from T0547.t04.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)G77 (1jftA)K114 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1jftA)G118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1jftA)V121 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFN 1jftA 115 :RVD T0547 82 :VY 1jftA 119 :LL T0547 85 :L 1jftA 122 :M Number of specific fragments extracted= 3 number of extra gaps= 3 total=57319 # 1zz1A.77.127 read from T0547.t04.many.frag # found chain 1zz1A in training set T0547 77 :GGFNAVYPL 1zz1A 128 :GELSAGYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57320 # 1bu8A.77.67 read from T0547.t04.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)G78 (1bu8A)D67 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1bu8A)K69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1bu8A)I73 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :G 1bu8A 66 :L T0547 79 :F 1bu8A 68 :R T0547 81 :AVY 1bu8A 70 :TRF T0547 85 :L 1bu8A 74 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=57324 # 1vd6A.77.92 read from T0547.t04.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)G78 (1vd6A)Q94 because G (3-10) conformation "forbidden" or filtered. T0547 77 :G 1vd6A 93 :P T0547 79 :FNAVYPL 1vd6A 95 :AVFNVEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=57326 # 2f2hA.77.233 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)G77 (2f2hA)S234 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (2f2hA)L237 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GF 2f2hA 235 :EY T0547 81 :AVYPL 2f2hA 238 :EYFVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=57328 # 1s95A.77.66 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1s95A 233 :ETEKITV T0547 85 :L 1s95A 241 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=57330 # 1vchA.77.50 read from T0547.t04.many.frag # found chain 1vchA in template set Warning: unaligning (T0547)P84 (1vchA)T58 because Y (epsilon') conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1vchA 51 :KEAEILF T0547 85 :L 1vchA 59 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=57332 # 1o08A.77.105 read from T0547.t04.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1o08A 1106 :NKIKIAL T0547 85 :L 1o08A 1114 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=57334 # 1knwA.77.44 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G78 (1knwA)F46 because P (beta_P) conformation "forbidden" or filtered. T0547 77 :G 1knwA 45 :Q T0547 79 :FNAVYPL 1knwA 47 :DVVRFAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=57336 # 1j0dA.77.28 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)N80 (1j0dA)V32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1j0dA)N33 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1j0dA)A36 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGF 1j0dA 29 :GSK T0547 82 :VY 1j0dA 34 :VY T0547 85 :L 1j0dA 37 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=57339 # 2b8mA.77.90 read from T0547.t04.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)A81 (2b8mA)E94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (2b8mA)V97 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFN 2b8mA 90 :SDIL T0547 82 :VY 2b8mA 95 :FF T0547 85 :L 2b8mA 98 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=57342 # 1xqwA.77.94 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)P84 (1xqwA)M102 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1xqwA 95 :GNEKVFL T0547 85 :L 1xqwA 103 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=57344 # 1zbsA.77.57 read from T0547.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)G77 (1zbsA)S58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1zbsA)F65 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1zbsA 59 :SIRAVY T0547 85 :L 1zbsA 66 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=57346 # 1q2lA.77.506 read from T0547.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)G78 (1q2lA)N531 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1q2lA)A537 because Y (epsilon') conformation "forbidden" or filtered. T0547 77 :G 1q2lA 530 :S T0547 79 :FNAVY 1q2lA 532 :LRVVY T0547 85 :L 1q2lA 538 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=57349 # 1w96A.77.128 read from T0547.t04.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)P84 (1w96A)A148 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1w96A)G149 because S (epsilon) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1w96A 141 :ADVDAVW Number of specific fragments extracted= 1 number of extra gaps= 1 total=57350 # 1pjr.77.23 read from T0547.t04.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)G77 (1pjr)E24 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1pjr)G25 because S (epsilon) conformation "forbidden" or filtered. T0547 79 :FNAVYPL 1pjr 26 :PLLIMAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=57351 # 1g8kA.77.292 read from T0547.t04.many.frag # found chain 1g8kA in training set T0547 77 :GGFNAVYPL 1g8kA 293 :NDRVLHLAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=57352 # 1uarA.77.77 read from T0547.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)P84 (1uarA)Y85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1uarA)G86 because Y (epsilon') conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1uarA 78 :NDTTVVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=57353 # 1n55A.77.35 read from T0547.t04.many.frag # found chain 1n55A in training set Warning: unaligning (T0547)G78 (1n55A)D36 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1n55A)A42 because D (zeta) conformation "forbidden" or filtered. T0547 77 :G 1n55A 35 :H T0547 79 :FNAVY 1n55A 37 :VQCVV T0547 85 :L 1n55A 43 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=57356 # 1ryoA.77.31 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)G78 (1ryoA)D33 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1ryoA)P35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :G 1ryoA 32 :S T0547 79 :F 1ryoA 34 :G T0547 81 :AVY 1ryoA 36 :SVA T0547 85 :L 1ryoA 40 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=57360 # 2fqxA.77.60 read from T0547.t04.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 2fqxA 76 :ENMGLVV T0547 85 :L 2fqxA 84 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=57362 # 2aebA.77.90 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)N80 (2aebA)S94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G99 T0547 77 :GGF 2aebA 91 :GRI T0547 82 :VY 2aebA 96 :VL Number of specific fragments extracted= 2 number of extra gaps= 2 total=57364 # 1nar.77.75 read from T0547.t04.many.frag # found chain 1nar in training set Warning: unaligning (T0547)P84 (1nar)S83 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1nar 76 :PEVKVVI T0547 85 :L 1nar 84 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=57366 # 1ox0A.77.201 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1ox0A 183 :QDVMLVG T0547 85 :L 1ox0A 191 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=57368 # 1itxA.77.211 read from T0547.t04.many.frag # found chain 1itxA in training set Warning: unaligning (T0547)G78 (1itxA)K245 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1itxA)L247 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1itxA)L248 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1itxA)A251 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :G 1itxA 244 :K T0547 79 :F 1itxA 246 :Y T0547 82 :VY 1itxA 249 :TI T0547 85 :L 1itxA 252 :S Number of specific fragments extracted= 4 number of extra gaps= 3 total=57372 # 7odcA.78.60 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G78 (7odcA)R61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (7odcA)P64 because P (beta_P) conformation "forbidden" or filtered. T0547 79 :FN 7odcA 62 :VT T0547 82 :VYPLK 7odcA 65 :FYAVK Number of specific fragments extracted= 2 number of extra gaps= 2 total=57374 # 1bjt.78.58 read from T0547.t04.many.frag # found chain 1bjt in template set T0547 78 :GFNAVYPLK 1bjt 467 :DYYGCYPLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=57375 # 1wdaA.78.310 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G78 (1wdaA)P304 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wdaA)I313 T0547 79 :FNAVY 1wdaA 305 :PQEVY T0547 85 :L 1wdaA 311 :C Number of specific fragments extracted= 2 number of extra gaps= 3 total=57377 # 2f2hA.78.234 read from T0547.t04.many.frag # found chain 2f2hA in template set T0547 78 :GFNAVYPLK 2f2hA 235 :EYLEYFVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=57378 # 1vefA.78.102 read from T0547.t04.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)L85 (1vefA)V110 because Y (epsilon') conformation "forbidden" or filtered. T0547 78 :GFNAVYP 1vefA 103 :ELNRVFP T0547 86 :K 1vefA 111 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=57380 # 1knwA.78.45 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G78 (1knwA)F46 because P (beta_P) conformation "forbidden" or filtered. T0547 79 :FNAVYPLK 1knwA 47 :DVVRFAQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=57381 # 1jftA.78.113 read from T0547.t04.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)A81 (1jftA)G118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1jftA)V121 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFN 1jftA 115 :RVD T0547 82 :VY 1jftA 119 :LL T0547 85 :LK 1jftA 122 :MC Number of specific fragments extracted= 3 number of extra gaps= 2 total=57384 # 1zz1A.78.128 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)A81 (1zz1A)A132 because Y (epsilon') conformation "forbidden" or filtered. T0547 78 :GFN 1zz1A 129 :ELS T0547 82 :VYPLK 1zz1A 133 :GYALV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57386 # 1o08A.78.106 read from T0547.t04.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)N80 (1o08A)K1109 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 78 :GF 1o08A 1107 :KI T0547 81 :AVY 1o08A 1110 :IAL T0547 85 :LK 1o08A 1114 :SA Number of specific fragments extracted= 3 number of extra gaps= 2 total=57389 # 1qwnA.78.122 read from T0547.t04.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G78 (1qwnA)E123 because G (3-10) conformation "forbidden" or filtered. T0547 79 :FNAVYPLK 1qwnA 124 :MKFIWAEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=57390 # 1j0dA.78.29 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)N80 (1j0dA)V32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1j0dA)A36 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GF 1j0dA 30 :SK T0547 81 :AVY 1j0dA 33 :NVY T0547 85 :LK 1j0dA 37 :KR Number of specific fragments extracted= 3 number of extra gaps= 2 total=57393 # 1s95A.78.67 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1s95A 234 :TEKITV T0547 85 :LK 1s95A 241 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=57395 # 1bu8A.78.68 read from T0547.t04.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)N80 (1bu8A)K69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1bu8A)I73 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GF 1bu8A 67 :DR T0547 81 :AVY 1bu8A 70 :TRF T0547 85 :LK 1bu8A 74 :VH Number of specific fragments extracted= 3 number of extra gaps= 2 total=57398 # 1vd6A.78.93 read from T0547.t04.many.frag # found chain 1vd6A in training set T0547 78 :GFNAVYPLK 1vd6A 94 :QAVFNVELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57399 # 1xqwA.78.95 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)P84 (1xqwA)M102 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1xqwA 96 :NEKVFL T0547 85 :LK 1xqwA 103 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=57401 # 1zbsA.78.58 read from T0547.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)P84 (1zbsA)F65 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1zbsA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 78 :GFNAVY 1zbsA 59 :SIRAVY T0547 85 :L 1zbsA 66 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=57403 # 2b8mA.78.91 read from T0547.t04.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)P84 (2b8mA)V97 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFNAVY 2b8mA 91 :DILEFF T0547 85 :LK 2b8mA 98 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=57405 # 1ta0A.78.47 read from T0547.t04.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)A81 (1ta0A)Q126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1ta0A)V129 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFN 1ta0A 123 :VVH T0547 82 :VY 1ta0A 127 :VY T0547 85 :LK 1ta0A 130 :LK Number of specific fragments extracted= 3 number of extra gaps= 2 total=57408 # 1pjr.78.24 read from T0547.t04.many.frag # found chain 1pjr in template set T0547 78 :GFNAVYPLK 1pjr 25 :GPLLIMAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57409 # 1vchA.78.51 read from T0547.t04.many.frag # found chain 1vchA in template set Warning: unaligning (T0547)P84 (1vchA)T58 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE in next template residue (1vchA)T61 T0547 78 :GFNAVY 1vchA 52 :EAEILF T0547 85 :L 1vchA 59 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=57411 # 1itxA.78.212 read from T0547.t04.many.frag # found chain 1itxA in training set Warning: unaligning (T0547)P84 (1itxA)A251 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1itxA)G253 because P (beta_P) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1itxA 245 :KYLLTI T0547 85 :L 1itxA 252 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=57413 # 2fqxA.78.61 read from T0547.t04.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (2fqxA)G85 because S (epsilon) conformation "forbidden" or filtered. T0547 78 :GFNAVY 2fqxA 77 :NMGLVV T0547 85 :L 2fqxA 84 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=57415 # 1q2lA.78.507 read from T0547.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)G78 (1q2lA)N531 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1q2lA)A537 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :FNAVY 1q2lA 532 :LRVVY T0547 85 :LK 1q2lA 538 :PS Number of specific fragments extracted= 2 number of extra gaps= 2 total=57417 # 1ox0A.78.202 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)Y83 (1ox0A)G189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 78 :GFNAV 1ox0A 184 :DVMLV T0547 85 :LK 1ox0A 191 :TE Number of specific fragments extracted= 2 number of extra gaps= 1 total=57419 # 1fcdA.78.146 read from T0547.t04.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)N80 (1fcdA)T149 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1fcdA)A153 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE in next template residue (1fcdA)P155 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (1fcdA)P155 T0547 78 :GF 1fcdA 147 :GG T0547 81 :AVY 1fcdA 150 :VVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=57421 # 1ow1A.78.102 read from T0547.t04.many.frag # found chain 1ow1A in training set T0547 78 :GFNAVYPLK 1ow1A 3572 :DYCLLLALP Number of specific fragments extracted= 1 number of extra gaps= 0 total=57422 # 1g8kA.78.293 read from T0547.t04.many.frag # found chain 1g8kA in training set T0547 78 :GFNAVYPLK 1g8kA 294 :DRVLHLAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=57423 # 2aebA.78.91 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G99 T0547 78 :GFNAVY 2aebA 92 :RISLVL T0547 86 :K 2aebA 100 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=57425 # 1w96A.78.129 read from T0547.t04.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)P84 (1w96A)A148 because G (3-10) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1w96A 142 :DVDAVW T0547 85 :LK 1w96A 149 :GW Number of specific fragments extracted= 2 number of extra gaps= 1 total=57427 # 1zwxA.78.186 read from T0547.t04.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G78 (1zwxA)D221 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1zwxA)G227 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FNAVY 1zwxA 222 :EIIFI T0547 85 :LK 1zwxA 228 :GD Number of specific fragments extracted= 2 number of extra gaps= 2 total=57429 # 7odcA.79.61 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 79 :FNAVYPLKV 7odcA 62 :VTPFYAVKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=57430 # 2f2hA.79.235 read from T0547.t04.many.frag # found chain 2f2hA in template set T0547 79 :FNAVYPLKV 2f2hA 236 :YLEYFVIDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=57431 # 1knwA.79.46 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 79 :FNAVYPLKV 1knwA 47 :DVVRFAQKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57432 # 1wdaA.79.311 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wdaA)I313 Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)I313 T0547 79 :FNAVY 1wdaA 305 :PQEVY T0547 85 :L 1wdaA 311 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=57434 # 1bjt.79.59 read from T0547.t04.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)K86 (1bjt)R475 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FNAVYPL 1bjt 468 :YYGCYPL T0547 87 :V 1bjt 476 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=57436 # 1qwnA.79.123 read from T0547.t04.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)N80 (1qwnA)K125 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :F 1qwnA 124 :M T0547 81 :AVYPLKV 1qwnA 126 :FIWAEIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=57438 # 1vefA.79.103 read from T0547.t04.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)A81 (1vefA)R106 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1vefA)V110 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :FN 1vefA 104 :LN T0547 82 :VYP 1vefA 107 :VFP T0547 86 :KV 1vefA 111 :NS Number of specific fragments extracted= 3 number of extra gaps= 2 total=57441 # 1o08A.79.107 read from T0547.t04.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)N80 (1o08A)K1109 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 79 :F 1o08A 1108 :I T0547 81 :AVY 1o08A 1110 :IAL T0547 85 :LKV 1o08A 1114 :SAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=57444 # 1zz1A.79.129 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)K86 (1zz1A)V137 because P (beta_P) conformation "forbidden" or filtered. T0547 79 :FNAVYPL 1zz1A 130 :LSAGYAL T0547 87 :V 1zz1A 138 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=57446 # 1jftA.79.114 read from T0547.t04.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)P84 (1jftA)V121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1jftA)C123 because G (3-10) conformation "forbidden" or filtered. T0547 79 :FNAVY 1jftA 116 :VDGLL T0547 85 :L 1jftA 122 :M T0547 87 :V 1jftA 124 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=57449 # 1pjr.79.25 read from T0547.t04.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)N80 (1pjr)L27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1pjr)G34 because T (delta_L) conformation "forbidden" or filtered. T0547 79 :F 1pjr 26 :P T0547 81 :AVYPLK 1pjr 28 :LIMAGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=57451 # 1j0dA.79.30 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)N80 (1j0dA)V32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1j0dA)N33 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1j0dA)A36 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :F 1j0dA 31 :K T0547 82 :VY 1j0dA 34 :VY T0547 85 :LKV 1j0dA 37 :KRE Number of specific fragments extracted= 3 number of extra gaps= 2 total=57454 # 1ox0A.79.203 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :FNAVY 1ox0A 185 :VMLVG T0547 85 :LKV 1ox0A 191 :TEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=57456 # 1s95A.79.68 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1s95A)D242 because P (beta_P) conformation "forbidden" or filtered. T0547 79 :FNAVY 1s95A 235 :EKITV T0547 85 :L 1s95A 241 :G T0547 87 :V 1s95A 243 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=57459 # 1ta0A.79.48 read from T0547.t04.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)P84 (1ta0A)V129 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1ta0A)K131 because P (beta_P) conformation "forbidden" or filtered. T0547 79 :FNAVY 1ta0A 124 :VHQVY T0547 85 :L 1ta0A 130 :L T0547 87 :V 1ta0A 132 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=57462 # 1zbsA.79.59 read from T0547.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)N80 (1zbsA)R61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1zbsA)A62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1zbsA)F65 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1zbsA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :F 1zbsA 60 :I T0547 82 :VY 1zbsA 63 :VY T0547 85 :L 1zbsA 66 :Y T0547 87 :V 1zbsA 68 :A Number of specific fragments extracted= 4 number of extra gaps= 3 total=57466 # 1itxA.79.213 read from T0547.t04.many.frag # found chain 1itxA in training set Warning: unaligning (T0547)P84 (1itxA)A251 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1itxA)A254 because G (3-10) conformation "forbidden" or filtered. T0547 79 :FNAVY 1itxA 246 :YLLTI T0547 85 :LK 1itxA 252 :SG Number of specific fragments extracted= 2 number of extra gaps= 2 total=57468 # 2fqxA.79.62 read from T0547.t04.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (2fqxA)G85 because S (epsilon) conformation "forbidden" or filtered. T0547 79 :FNAVY 2fqxA 78 :MGLVV T0547 85 :L 2fqxA 84 :C T0547 87 :V 2fqxA 86 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=57471 # 2b8mA.79.92 read from T0547.t04.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)P84 (2b8mA)V97 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FNAVY 2b8mA 92 :ILEFF T0547 85 :LKV 2b8mA 98 :VKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=57473 # 1vd6A.79.94 read from T0547.t04.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1vd6A)F104 T0547 79 :FNAVYPLK 1vd6A 95 :AVFNVELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=57474 # 1xqwA.79.96 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)P84 (1xqwA)M102 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FNAVY 1xqwA 97 :EKVFL T0547 85 :LKV 1xqwA 103 :GSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=57476 # 2aebA.79.92 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)A81 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G99 T0547 79 :FN 2aebA 93 :IS T0547 82 :VY 2aebA 96 :VL T0547 86 :KV 2aebA 100 :DH Number of specific fragments extracted= 3 number of extra gaps= 2 total=57479 # 1bu8A.79.69 read from T0547.t04.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)P84 (1bu8A)I73 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FNAVY 1bu8A 68 :RKTRF T0547 85 :LKV 1bu8A 74 :VHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=57481 # 2a5yB.79.153 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)P84 (2a5yB)G159 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :FNAVY 2a5yB 154 :FLFLH T0547 85 :LKV 2a5yB 160 :RAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=57483 # 1r9jA.79.149 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)P84 (1r9jA)C153 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :FNAVY 1r9jA 148 :YTYVY T0547 85 :LKV 1r9jA 154 :GDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=57485 # 1q2lA.79.508 read from T0547.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)P84 (1q2lA)A537 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :FNAVY 1q2lA 532 :LRVVY T0547 85 :LKV 1q2lA 538 :PSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=57487 # 1g8kA.79.294 read from T0547.t04.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)A81 (1g8kA)L297 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FN 1g8kA 295 :RV T0547 82 :VYPLKV 1g8kA 298 :HLAIEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=57489 # 1ow1A.79.103 read from T0547.t04.many.frag # found chain 1ow1A in training set T0547 79 :FNAVYPLKV 1ow1A 3573 :YCLLLALPC Number of specific fragments extracted= 1 number of extra gaps= 0 total=57490 # 1vchA.79.52 read from T0547.t04.many.frag # found chain 1vchA in template set Warning: unaligning (T0547)P84 (1vchA)T58 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE in next template residue (1vchA)T61 Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE at template residue (1vchA)T61 T0547 79 :FNAVY 1vchA 53 :AEILF T0547 85 :L 1vchA 59 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=57492 # 1fcdA.79.147 read from T0547.t04.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)N80 (1fcdA)T149 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1fcdA)A153 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE in next template residue (1fcdA)P155 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (1fcdA)P155 T0547 79 :F 1fcdA 148 :G T0547 81 :AVY 1fcdA 150 :VVI T0547 87 :V 1fcdA 156 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=57495 # 7odcA.80.62 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 80 :NAVYPLKVN 7odcA 63 :TPFYAVKCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=57496 # 1knwA.80.47 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 80 :NAVYPLKVN 1knwA 48 :VVRFAQKAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=57497 # 2f2hA.80.236 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N80 (2f2hA)L237 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (2f2hA)D243 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 81 :AVYPL 2f2hA 238 :EYFVI T0547 87 :V 2f2hA 244 :G Number of specific fragments extracted= 2 number of extra gaps= 3 total=57499 # 1wdaA.80.312 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wdaA)I313 Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)I313 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)F314 T0547 80 :NAVY 1wdaA 306 :QEVY T0547 85 :L 1wdaA 311 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=57501 # 1bjt.80.60 read from T0547.t04.many.frag # found chain 1bjt in template set T0547 80 :NAVYPLKVN 1bjt 469 :YGCYPLRGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57502 # 1ox0A.80.204 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)Y83 (1ox0A)G189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 80 :NAV 1ox0A 186 :MLV T0547 85 :LKVN 1ox0A 191 :TEAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=57504 # 1qwnA.80.124 read from T0547.t04.many.frag # found chain 1qwnA in training set T0547 80 :NAVYPLKVN 1qwnA 125 :KFIWAEISY Number of specific fragments extracted= 1 number of extra gaps= 0 total=57505 # 1o08A.80.108 read from T0547.t04.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 80 :NAVY 1o08A 1109 :KIAL T0547 85 :LKVN 1o08A 1114 :SASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=57507 # 1ta0A.80.49 read from T0547.t04.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)P84 (1ta0A)V129 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1ta0A)P133 because P (beta_P) conformation "forbidden" or filtered. T0547 80 :NAVY 1ta0A 125 :HQVY T0547 85 :LKV 1ta0A 130 :LKR Number of specific fragments extracted= 2 number of extra gaps= 2 total=57509 # 1zz1A.80.130 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)A81 (1zz1A)A132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V82 (1zz1A)G133 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1zz1A)P139 because C (cis) conformation "forbidden" or filtered. T0547 80 :N 1zz1A 131 :S T0547 83 :YPLKV 1zz1A 134 :YALVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=57511 # 1pjr.80.26 read from T0547.t04.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)K86 (1pjr)A33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1pjr)G34 because T (delta_L) conformation "forbidden" or filtered. T0547 80 :NAVYPL 1pjr 27 :LLIMAG T0547 88 :N 1pjr 35 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=57513 # 1r9jA.80.150 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)P84 (1r9jA)C153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1r9jA)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 80 :NAVY 1r9jA 149 :TYVY T0547 86 :KVN 1r9jA 155 :DGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=57515 # 2aebA.80.93 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)A81 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G99 T0547 80 :N 2aebA 94 :S T0547 82 :VY 2aebA 96 :VL T0547 86 :KVN 2aebA 100 :DHS Number of specific fragments extracted= 3 number of extra gaps= 2 total=57518 # 2b8mA.80.93 read from T0547.t04.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)A81 (2b8mA)E94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (2b8mA)V97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (2b8mA)P101 because C (cis) conformation "forbidden" or filtered. T0547 80 :N 2b8mA 93 :L T0547 82 :VY 2b8mA 95 :FF T0547 85 :LKV 2b8mA 98 :VKA Number of specific fragments extracted= 3 number of extra gaps= 3 total=57521 # 1s95A.80.69 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)A81 (1s95A)I237 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1s95A)H244 because L (left) conformation "forbidden" or filtered. T0547 80 :N 1s95A 236 :K T0547 82 :VY 1s95A 238 :TV T0547 85 :LKV 1s95A 241 :GDT Number of specific fragments extracted= 3 number of extra gaps= 3 total=57524 # 1j0dA.80.31 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)N80 (1j0dA)V32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1j0dA)N33 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1j0dA)A36 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1j0dA 34 :VY T0547 85 :LKVN 1j0dA 37 :KRED Number of specific fragments extracted= 2 number of extra gaps= 2 total=57526 # 1jftA.80.115 read from T0547.t04.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)A81 (1jftA)G118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1jftA)V121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1jftA)S124 because T (delta_L) conformation "forbidden" or filtered. T0547 80 :N 1jftA 117 :D T0547 82 :VY 1jftA 119 :LL T0547 85 :LK 1jftA 122 :MC T0547 88 :N 1jftA 125 :E Number of specific fragments extracted= 4 number of extra gaps= 3 total=57530 # 1vefA.80.104 read from T0547.t04.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)N80 (1vefA)N105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1vefA)V110 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVYP 1vefA 106 :RVFP T0547 86 :KVN 1vefA 111 :NSG Number of specific fragments extracted= 2 number of extra gaps= 2 total=57532 # 1zbsA.80.60 read from T0547.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)P84 (1zbsA)F65 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1zbsA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 80 :NAVY 1zbsA 61 :RAVY T0547 85 :L 1zbsA 66 :Y T0547 87 :VN 1zbsA 68 :AG Number of specific fragments extracted= 3 number of extra gaps= 2 total=57535 # 1itxA.80.214 read from T0547.t04.many.frag # found chain 1itxA in training set Warning: unaligning (T0547)P84 (1itxA)A251 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVY 1itxA 247 :LLTI T0547 85 :LKVN 1itxA 252 :SGAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=57537 # 1vd6A.80.95 read from T0547.t04.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1vd6A)F104 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)F104 T0547 80 :NAVYPLK 1vd6A 96 :VFNVELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=57538 # 2fqxA.80.63 read from T0547.t04.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (2fqxA)G85 because S (epsilon) conformation "forbidden" or filtered. T0547 80 :NAVY 2fqxA 79 :GLVV T0547 85 :L 2fqxA 84 :C T0547 87 :VN 2fqxA 86 :SF Number of specific fragments extracted= 3 number of extra gaps= 2 total=57541 # 1yzxA.80.8 read from T0547.t04.many.frag # found chain 1yzxA in template set Warning: unaligning (T0547)P84 (1yzxA)D13 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVY 1yzxA 9 :ELFY T0547 85 :LKVN 1yzxA 14 :VLSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=57543 # 1vchA.80.53 read from T0547.t04.many.frag # found chain 1vchA in template set Warning: unaligning (T0547)P84 (1vchA)T58 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE in next template residue (1vchA)T61 Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE at template residue (1vchA)T61 T0547 80 :NAVY 1vchA 54 :EILF T0547 85 :L 1vchA 59 :T T0547 88 :N 1vchA 62 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=57546 # 1xqwA.80.97 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)A81 (1xqwA)V99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1xqwA)M102 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :N 1xqwA 98 :K T0547 82 :VY 1xqwA 100 :FL T0547 85 :LKVN 1xqwA 103 :GSAY Number of specific fragments extracted= 3 number of extra gaps= 2 total=57549 # 1g8kA.80.295 read from T0547.t04.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)K86 (1g8kA)E302 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1g8kA)G304 because T (delta_L) conformation "forbidden" or filtered. T0547 80 :NAVYPL 1g8kA 296 :VLHLAI T0547 87 :V 1g8kA 303 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=57551 # 1bu8A.80.70 read from T0547.t04.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)P84 (1bu8A)I73 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1bu8A)F77 because P (beta_P) conformation "forbidden" or filtered. T0547 80 :NAVY 1bu8A 69 :KTRF T0547 85 :LKV 1bu8A 74 :VHG Number of specific fragments extracted= 2 number of extra gaps= 2 total=57553 # 1q9jA.80.117 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)A81 (1q9jA)T119 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1q9jA)L122 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :N 1q9jA 118 :L T0547 82 :VY 1q9jA 120 :LY T0547 85 :LKVN 1q9jA 123 :HHCM Number of specific fragments extracted= 3 number of extra gaps= 2 total=57556 # 2a5yB.80.154 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)P84 (2a5yB)G159 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (2a5yB)G162 because T (delta_L) conformation "forbidden" or filtered. T0547 80 :NAVY 2a5yB 155 :LFLH T0547 85 :LK 2a5yB 160 :RA T0547 88 :N 2a5yB 163 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=57559 # 1ppjB.80.45 read from T0547.t04.many.frag # found chain 1ppjB in template set Warning: unaligning (T0547)N88 (1ppjB)G54 because P (beta_P) conformation "forbidden" or filtered. T0547 80 :NAVYPLKV 1ppjB 46 :RIGLFIKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=57560 # 7odcA.81.63 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 81 :AVYPLKVNQ 7odcA 64 :PFYAVKCND Number of specific fragments extracted= 1 number of extra gaps= 0 total=57561 # 1knwA.81.48 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 81 :AVYPLKVNQ 1knwA 49 :VRFAQKACS Number of specific fragments extracted= 1 number of extra gaps= 0 total=57562 # 2f2hA.81.237 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 81 :AVYPLKV 2f2hA 238 :EYFVIDG T0547 89 :Q 2f2hA 246 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=57564 # 1wdaA.81.313 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wdaA)I313 Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)I313 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)F314 T0547 81 :AVY 1wdaA 307 :EVY T0547 85 :L 1wdaA 311 :C T0547 89 :Q 1wdaA 315 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=57567 # 1ta0A.81.50 read from T0547.t04.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)P84 (1ta0A)V129 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 1ta0A 126 :QVY T0547 85 :LKVNQ 1ta0A 130 :LKRPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=57569 # 1ox0A.81.205 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)A81 (1ox0A)L187 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :VY 1ox0A 188 :VG T0547 85 :LKVNQ 1ox0A 191 :TEASI Number of specific fragments extracted= 2 number of extra gaps= 2 total=57571 # 1bjt.81.61 read from T0547.t04.many.frag # found chain 1bjt in template set T0547 81 :AVYPLKVNQ 1bjt 470 :GCYPLRGKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=57572 # 2b8mA.81.94 read from T0547.t04.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)P84 (2b8mA)V97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (2b8mA)P101 because C (cis) conformation "forbidden" or filtered. T0547 81 :AVY 2b8mA 94 :EFF T0547 85 :LKV 2b8mA 98 :VKA T0547 89 :Q 2b8mA 102 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=57575 # 1o08A.81.109 read from T0547.t04.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 81 :AVY 1o08A 1110 :IAL T0547 85 :LKVNQ 1o08A 1114 :SASKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=57577 # 1r9jA.81.151 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)P84 (1r9jA)C153 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVY 1r9jA 150 :YVY T0547 85 :LKVNQ 1r9jA 154 :GDGCL Number of specific fragments extracted= 2 number of extra gaps= 1 total=57579 # 1s95A.81.70 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1s95A)H244 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1s95A)G245 because L (left) conformation "forbidden" or filtered. T0547 81 :AVY 1s95A 237 :ITV T0547 85 :LKV 1s95A 241 :GDT Number of specific fragments extracted= 2 number of extra gaps= 2 total=57581 # 1pjr.81.27 read from T0547.t04.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)V87 (1pjr)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1pjr)G36 because L (left) conformation "forbidden" or filtered. T0547 81 :AVYPLK 1pjr 28 :LIMAGA T0547 88 :N 1pjr 35 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=57583 # 1j0dA.81.32 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)A81 (1j0dA)N33 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1j0dA)A36 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1j0dA 34 :VY T0547 85 :LKVNQ 1j0dA 37 :KREDC Number of specific fragments extracted= 2 number of extra gaps= 2 total=57585 # 1zz1A.81.131 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)N88 (1zz1A)P139 because C (cis) conformation "forbidden" or filtered. T0547 81 :AVYPLKV 1zz1A 132 :AGYALVN T0547 89 :Q 1zz1A 140 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=57587 # 1ryoA.81.35 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 1ryoA 36 :SVA T0547 85 :LKVNQ 1ryoA 40 :VKKAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=57589 # 1jftA.81.116 read from T0547.t04.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)A81 (1jftA)G118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1jftA)V121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1jftA)S124 because T (delta_L) conformation "forbidden" or filtered. T0547 82 :VY 1jftA 119 :LL T0547 85 :LK 1jftA 122 :MC T0547 88 :NQ 1jftA 125 :EY Number of specific fragments extracted= 3 number of extra gaps= 3 total=57592 # 2fqxA.81.64 read from T0547.t04.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 2fqxA 80 :LVV T0547 85 :LKVNQ 2fqxA 84 :CGSFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=57594 # 1xqwA.81.98 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)P84 (1xqwA)M102 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1xqwA)A105 because S (epsilon) conformation "forbidden" or filtered. T0547 81 :AVY 1xqwA 99 :VFL T0547 85 :LK 1xqwA 103 :GS T0547 88 :NQ 1xqwA 106 :YG Number of specific fragments extracted= 3 number of extra gaps= 2 total=57597 # 1zbsA.81.61 read from T0547.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)P84 (1zbsA)F65 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1zbsA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVY 1zbsA 62 :AVY T0547 85 :L 1zbsA 66 :Y T0547 87 :VNQ 1zbsA 68 :AGC Number of specific fragments extracted= 3 number of extra gaps= 2 total=57600 # 1itxA.81.215 read from T0547.t04.many.frag # found chain 1itxA in training set Warning: unaligning (T0547)P84 (1itxA)A251 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1itxA)G253 because P (beta_P) conformation "forbidden" or filtered. T0547 81 :AVY 1itxA 248 :LTI T0547 85 :L 1itxA 252 :S T0547 87 :VNQ 1itxA 254 :ASA Number of specific fragments extracted= 3 number of extra gaps= 2 total=57603 # 1qwnA.81.125 read from T0547.t04.many.frag # found chain 1qwnA in training set T0547 81 :AVYPLKVNQ 1qwnA 126 :FIWAEISYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=57604 # 1q9jA.81.118 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)P84 (1q9jA)L122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1q9jA)A127 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVY 1q9jA 119 :TLY T0547 85 :LKVN 1q9jA 123 :HHCM Number of specific fragments extracted= 2 number of extra gaps= 2 total=57606 # 1yzxA.81.9 read from T0547.t04.many.frag # found chain 1yzxA in template set Warning: unaligning (T0547)Y83 (1yzxA)Y12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1yzxA)D13 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AV 1yzxA 10 :LF T0547 85 :LKVNQ 1yzxA 14 :VLSPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=57608 # 1t8tA.81.20 read from T0547.t04.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (1t8tA)V160 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1t8tA)V160 Warning: unaligning (T0547)V87 (1t8tA)K162 because T (delta_L) conformation "forbidden" or filtered. T0547 81 :AVY 1t8tA 156 :III T0547 86 :K 1t8tA 161 :K T0547 88 :NQ 1t8tA 163 :GG Number of specific fragments extracted= 3 number of extra gaps= 2 total=57611 # 2aebA.81.94 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)A81 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G99 T0547 82 :VY 2aebA 96 :VL T0547 86 :KVNQ 2aebA 100 :DHSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=57613 # 1z9hA.81.15 read from T0547.t04.many.frag # found chain 1z9hA in template set Warning: unaligning (T0547)P84 (1z9hA)Q106 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVY 1z9hA 103 :TLY T0547 85 :LKVNQ 1z9hA 107 :YKTCP Number of specific fragments extracted= 2 number of extra gaps= 1 total=57615 # 1vefA.81.105 read from T0547.t04.many.frag # found chain 1vefA in training set T0547 81 :AVYPLKVNQ 1vefA 106 :RVFPVNSGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=57616 # 1ppjB.81.46 read from T0547.t04.many.frag # found chain 1ppjB in template set T0547 81 :AVYPLKVNQ 1ppjB 47 :IGLFIKAGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=57617 # 1bu8A.81.71 read from T0547.t04.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)P84 (1bu8A)I73 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1bu8A)H75 because P (beta_P) conformation "forbidden" or filtered. T0547 81 :AVY 1bu8A 70 :TRF T0547 85 :L 1bu8A 74 :V T0547 87 :VNQ 1bu8A 76 :GFI Number of specific fragments extracted= 3 number of extra gaps= 2 total=57620 # 1gqiA.81.107 read from T0547.t04.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)P84 (1gqiA)I115 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 1gqiA 112 :HVV T0547 85 :LKVNQ 1gqiA 116 :VAANS Number of specific fragments extracted= 2 number of extra gaps= 1 total=57622 # 7odcA.82.64 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 82 :VYPLKVNQY 7odcA 65 :FYAVKCNDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=57623 # 1knwA.82.49 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 82 :VYPLKVNQY 1knwA 50 :RFAQKACSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=57624 # 2f2hA.82.238 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)K86 (2f2hA)D243 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 82 :VYPL 2f2hA 239 :YFVI T0547 87 :V 2f2hA 244 :G T0547 89 :QY 2f2hA 246 :TP Number of specific fragments extracted= 3 number of extra gaps= 2 total=57627 # 1ox0A.82.206 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1ox0A)E192 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1ox0A 188 :VG T0547 85 :L 1ox0A 191 :T T0547 87 :VNQY 1ox0A 193 :ASIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=57630 # 1ta0A.82.51 read from T0547.t04.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)P84 (1ta0A)V129 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1ta0A 127 :VY T0547 85 :LKVNQY 1ta0A 130 :LKRPHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57632 # 1gqiA.82.108 read from T0547.t04.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)P84 (1gqiA)I115 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1gqiA 113 :VV T0547 85 :LKVNQY 1gqiA 116 :VAANSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=57634 # 1wdaA.82.314 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wdaA)I313 Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)I313 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)F314 T0547 82 :VY 1wdaA 308 :VY T0547 85 :L 1wdaA 311 :C T0547 89 :QY 1wdaA 315 :EN Number of specific fragments extracted= 3 number of extra gaps= 2 total=57637 # 1ryoA.82.36 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1ryoA 37 :VA T0547 85 :LKVNQY 1ryoA 40 :VKKASY Number of specific fragments extracted= 2 number of extra gaps= 1 total=57639 # 1z9hA.82.16 read from T0547.t04.many.frag # found chain 1z9hA in template set Warning: unaligning (T0547)P84 (1z9hA)Q106 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :VY 1z9hA 104 :LY T0547 85 :LKVNQY 1z9hA 107 :YKTCPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=57641 # 1o08A.82.110 read from T0547.t04.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 82 :VY 1o08A 1111 :AL T0547 85 :LKVNQY 1o08A 1114 :SASKNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=57643 # 1s95A.82.71 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1s95A)G245 because L (left) conformation "forbidden" or filtered. T0547 82 :VY 1s95A 238 :TV T0547 85 :LKVN 1s95A 241 :GDTH T0547 90 :Y 1s95A 246 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=57646 # 1vbkA.82.49 read from T0547.t04.many.frag # found chain 1vbkA in template set Warning: unaligning (T0547)P84 (1vbkA)I52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1vbkA)N56 because G (3-10) conformation "forbidden" or filtered. T0547 82 :VY 1vbkA 50 :RI T0547 85 :LKV 1vbkA 53 :VKT T0547 89 :QY 1vbkA 57 :SP Number of specific fragments extracted= 3 number of extra gaps= 2 total=57649 # 2fqxA.82.65 read from T0547.t04.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 2fqxA 81 :VV T0547 85 :LKVNQY 2fqxA 84 :CGSFLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57651 # 1q9jA.82.119 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)P84 (1q9jA)L122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1q9jA)A127 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :VY 1q9jA 120 :LY T0547 85 :LKVN 1q9jA 123 :HHCM T0547 90 :Y 1q9jA 128 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=57654 # 1xqwA.82.99 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)P84 (1xqwA)M102 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1xqwA)A105 because S (epsilon) conformation "forbidden" or filtered. T0547 82 :VY 1xqwA 100 :FL T0547 85 :LK 1xqwA 103 :GS T0547 88 :NQY 1xqwA 106 :YGG Number of specific fragments extracted= 3 number of extra gaps= 2 total=57657 # 1pjr.82.28 read from T0547.t04.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)Q89 (1pjr)G36 because L (left) conformation "forbidden" or filtered. T0547 82 :VYPLKVN 1pjr 29 :IMAGAGS T0547 90 :Y 1pjr 37 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=57659 # 1t8tA.82.21 read from T0547.t04.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (1t8tA)V160 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1t8tA)V160 Warning: unaligning (T0547)V87 (1t8tA)K162 because T (delta_L) conformation "forbidden" or filtered. T0547 82 :VY 1t8tA 157 :II T0547 86 :K 1t8tA 161 :K T0547 88 :NQY 1t8tA 163 :GGT Number of specific fragments extracted= 3 number of extra gaps= 2 total=57662 # 1itxA.82.216 read from T0547.t04.many.frag # found chain 1itxA in training set Warning: unaligning (T0547)P84 (1itxA)A251 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1itxA 249 :TI T0547 85 :LKVNQY 1itxA 252 :SGASAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=57664 # 1km4A.82.15 read from T0547.t04.many.frag # found chain 1km4A in template set T0547 82 :VYPLKVNQY 1km4A 16 :ILAMDLMNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=57665 # 2b8mA.82.95 read from T0547.t04.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)P84 (2b8mA)V97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (2b8mA)P101 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (2b8mA)H102 because P (beta_P) conformation "forbidden" or filtered. T0547 82 :VY 2b8mA 95 :FF T0547 85 :LKV 2b8mA 98 :VKA T0547 90 :Y 2b8mA 103 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=57668 # 1lw7A.82.31 read from T0547.t04.many.frag # found chain 1lw7A in template set Warning: unaligning (T0547)P84 (1lw7A)V90 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1lw7A 88 :LH T0547 85 :LKVNQY 1lw7A 91 :IVCSDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=57670 # 1vd6A.82.97 read from T0547.t04.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1vd6A)F104 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)F104 Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)P105 Warning: unaligning (T0547)Y90 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)G106 T0547 82 :VYPLK 1vd6A 98 :NVELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=57671 # 1jftA.82.117 read from T0547.t04.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)P84 (1jftA)V121 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1jftA 119 :LL T0547 85 :LKVNQY 1jftA 122 :MCSEYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=57673 # 1r9jA.82.152 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)P84 (1r9jA)C153 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :VY 1r9jA 151 :VY T0547 85 :LKVNQY 1r9jA 154 :GDGCLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=57675 # 1ow1A.82.106 read from T0547.t04.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)V87 (1ow1A)C3581 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1ow1A)G3582 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :VYPLK 1ow1A 3576 :LLALP T0547 89 :QY 1ow1A 3583 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=57677 # 1onrA.82.129 read from T0547.t04.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)P84 (1onrA)L133 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1onrA 131 :IK T0547 85 :LKVNQY 1onrA 134 :ASTWQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=57679 # 1ppjB.82.47 read from T0547.t04.many.frag # found chain 1ppjB in template set Warning: unaligning (T0547)V87 (1ppjB)A53 because G (3-10) conformation "forbidden" or filtered. T0547 82 :VYPLK 1ppjB 48 :GLFIK T0547 88 :NQY 1ppjB 54 :GSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=57681 # 1bjt.82.62 read from T0547.t04.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)Q89 (1bjt)M478 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VYPLKVN 1bjt 471 :CYPLRGK T0547 90 :Y 1bjt 479 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=57683 # 1qwgA.82.16 read from T0547.t04.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)V87 (1qwgA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 82 :VYPLK 1qwgA 17 :VVLDK T0547 88 :NQY 1qwgA 23 :LPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=57685 # 1ua4A.82.32 read from T0547.t04.many.frag # found chain 1ua4A in template set T0547 82 :VYPLKVNQY 1ua4A 33 :IDAIKYLDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=57686 # 1knwA.83.50 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 83 :YPLKVNQYP 1knwA 51 :FAQKACSNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=57687 # 7odcA.83.65 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 83 :YPLKVNQYP 7odcA 66 :YAVKCNDSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=57688 # 2f2hA.83.239 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 83 :YPLKV 2f2hA 240 :FVIDG T0547 89 :QYP 2f2hA 246 :TPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=57690 # 1ryoA.83.37 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :Y 1ryoA 38 :A T0547 85 :LKVN 1ryoA 40 :VKKA T0547 90 :YP 1ryoA 45 :YL Number of specific fragments extracted= 3 number of extra gaps= 2 total=57693 # 1gqiA.83.109 read from T0547.t04.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)P84 (1gqiA)I115 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 1gqiA 114 :V T0547 85 :LKVNQYP 1gqiA 116 :VAANSDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57695 # 1ta0A.83.52 read from T0547.t04.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)P84 (1ta0A)V129 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1ta0A)H134 because T (delta_L) conformation "forbidden" or filtered. T0547 83 :Y 1ta0A 128 :Y T0547 85 :LKVN 1ta0A 130 :LKRP T0547 90 :YP 1ta0A 135 :VD Number of specific fragments extracted= 3 number of extra gaps= 2 total=57698 # 1vbkA.83.50 read from T0547.t04.many.frag # found chain 1vbkA in template set Warning: unaligning (T0547)P84 (1vbkA)I52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1vbkA)K54 because P (beta_P) conformation "forbidden" or filtered. T0547 83 :Y 1vbkA 51 :I T0547 85 :L 1vbkA 53 :V T0547 87 :VNQYP 1vbkA 55 :TNSPK Number of specific fragments extracted= 3 number of extra gaps= 2 total=57701 # 1ox0A.83.207 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :Y 1ox0A 189 :G T0547 85 :LKVNQYP 1ox0A 191 :TEASITP Number of specific fragments extracted= 2 number of extra gaps= 1 total=57703 # 1z9hA.83.17 read from T0547.t04.many.frag # found chain 1z9hA in template set Warning: unaligning (T0547)P84 (1z9hA)Q106 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :Y 1z9hA 105 :Y T0547 85 :LKVNQYP 1z9hA 107 :YKTCPFC Number of specific fragments extracted= 2 number of extra gaps= 1 total=57705 # 1t8tA.83.22 read from T0547.t04.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (1t8tA)V160 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1t8tA)V160 T0547 83 :Y 1t8tA 158 :I T0547 86 :KVNQYP 1t8tA 161 :KKGGTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=57707 # 2fqxA.83.66 read from T0547.t04.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 2fqxA 82 :V T0547 85 :LKVNQYP 2fqxA 84 :CGSFLVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=57709 # 1km4A.83.16 read from T0547.t04.many.frag # found chain 1km4A in template set Warning: unaligning (T0547)K86 (1km4A)D20 because G (3-10) conformation "forbidden" or filtered. T0547 83 :YPL 1km4A 17 :LAM T0547 87 :VNQYP 1km4A 21 :LMNRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=57711 # 1ua4A.83.33 read from T0547.t04.many.frag # found chain 1ua4A in template set T0547 83 :YPLKVNQYP 1ua4A 34 :DAIKYLDSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57712 # 1q9jA.83.120 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)P84 (1q9jA)L122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1q9jA)M126 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1q9jA)A127 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :Y 1q9jA 121 :Y T0547 85 :LKV 1q9jA 123 :HHC T0547 90 :YP 1q9jA 128 :DG Number of specific fragments extracted= 3 number of extra gaps= 2 total=57715 # 1s95A.83.72 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1s95A)H244 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1s95A)G245 because L (left) conformation "forbidden" or filtered. T0547 83 :Y 1s95A 239 :V T0547 85 :LKV 1s95A 241 :GDT T0547 90 :YP 1s95A 246 :QF Number of specific fragments extracted= 3 number of extra gaps= 2 total=57718 # 1yq2A.83.366 read from T0547.t04.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE in next template residue (1yq2A)H369 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (1yq2A)H369 T0547 83 :YP 1yq2A 366 :RT T0547 87 :VNQYP 1yq2A 370 :YPPHP Number of specific fragments extracted= 2 number of extra gaps= 1 total=57720 # 1pjr.83.29 read from T0547.t04.many.frag # found chain 1pjr in template set T0547 83 :YPLKVNQYP 1pjr 30 :MAGAGSGKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=57721 # 1lw7A.83.32 read from T0547.t04.many.frag # found chain 1lw7A in template set Warning: unaligning (T0547)P84 (1lw7A)V90 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 1lw7A 89 :H T0547 85 :LKVNQYP 1lw7A 91 :IVCSDTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57723 # 1m2oA.83.125 read from T0547.t04.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)P84 (1m2oA)V127 because D (zeta) conformation "forbidden" or filtered. T0547 83 :Y 1m2oA 126 :F T0547 85 :LKVNQYP 1m2oA 128 :VDLTSET Number of specific fragments extracted= 2 number of extra gaps= 1 total=57725 # 1xqwA.83.100 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)P84 (1xqwA)M102 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 1xqwA 101 :L T0547 85 :LKVNQYP 1xqwA 103 :GSAYGGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=57727 # 1zhvA.83.103 read from T0547.t04.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)P84 (1zhvA)L106 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1zhvA)R108 because P (beta_P) conformation "forbidden" or filtered. T0547 83 :Y 1zhvA 105 :L T0547 85 :L 1zhvA 107 :V T0547 87 :VNQYP 1zhvA 109 :SNDLE Number of specific fragments extracted= 3 number of extra gaps= 2 total=57730 # 1wdaA.83.315 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)P84 (1wdaA)A310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1wdaA)I313 Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)I313 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1wdaA)F314 Warning: unaligning (T0547)P91 (1wdaA)E317 because G (3-10) conformation "forbidden" or filtered. T0547 83 :Y 1wdaA 309 :Y T0547 85 :L 1wdaA 311 :C T0547 89 :QY 1wdaA 315 :EN Number of specific fragments extracted= 3 number of extra gaps= 3 total=57733 # 1o08A.83.111 read from T0547.t04.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 83 :Y 1o08A 1112 :L T0547 85 :LKVNQYP 1o08A 1114 :SASKNGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=57735 # 2cvbA.83.37 read from T0547.t04.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)P84 (2cvbA)V39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (2cvbA)M41 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :Y 2cvbA 38 :V T0547 85 :L 2cvbA 40 :F T0547 87 :VNQYP 2cvbA 42 :CNHCP Number of specific fragments extracted= 3 number of extra gaps= 2 total=57738 # 1qwgA.83.17 read from T0547.t04.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)N88 (1qwgA)L23 because P (beta_P) conformation "forbidden" or filtered. T0547 83 :YPLKV 1qwgA 18 :VLDKG T0547 89 :QYP 1qwgA 24 :PPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=57740 # 1jqnA.83.394 read from T0547.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)P84 (1jqnA)R396 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 1jqnA 395 :I T0547 85 :LKVNQYP 1jqnA 397 :QESTRHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=57742 # 1q5xA.83.36 read from T0547.t04.many.frag # found chain 1q5xA in template set Warning: unaligning (T0547)V87 (1q5xA)C41 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1q5xA)E43 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P91 (1q5xA)N45 because G (3-10) conformation "forbidden" or filtered. T0547 83 :YPLK 1q5xA 37 :ITVK T0547 88 :N 1q5xA 42 :F T0547 90 :Y 1q5xA 44 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=57745 # 1uvjA.83.320 read from T0547.t04.many.frag # found chain 1uvjA in template set Warning: unaligning (T0547)Q89 (1uvjA)D327 because L (left) conformation "forbidden" or filtered. T0547 83 :YPLKVN 1uvjA 321 :VATDVS T0547 90 :YP 1uvjA 328 :HD Number of specific fragments extracted= 2 number of extra gaps= 1 total=57747 # 1floA.83.77 read from T0547.t04.many.frag # found chain 1floA in template set T0547 83 :YPLKVNQYP 1floA 79 :FKYKTQKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=57748 # 1vd6A.83.98 read from T0547.t04.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1vd6A)F104 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)F104 Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)P105 Warning: unaligning (T0547)Y90 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)G106 Warning: unaligning (T0547)P91 (1vd6A)L107 because G (3-10) conformation "forbidden" or filtered. T0547 83 :YPLK 1vd6A 99 :VELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=57749 # 7odcA.84.66 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 84 :PLKVNQYPG 7odcA 67 :AVKCNDSRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57750 # 1knwA.84.51 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 84 :PLKVNQYPG 1knwA 52 :AQKACSNIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=57751 # 1vbkA.84.51 read from T0547.t04.many.frag # found chain 1vbkA in template set Warning: unaligning (T0547)P84 (1vbkA)I52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1vbkA)S57 because D (zeta) conformation "forbidden" or filtered. T0547 85 :LKVN 1vbkA 53 :VKTN T0547 90 :YPG 1vbkA 58 :PKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=57753 # 1ryoA.84.38 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :LKVN 1ryoA 40 :VKKA T0547 90 :YPG 1ryoA 45 :YLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=57755 # 1gqiA.84.110 read from T0547.t04.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)P84 (1gqiA)I115 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1gqiA 116 :VAANSDVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=57756 # 2f2hA.84.240 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 84 :PLKV 2f2hA 241 :VIDG T0547 89 :QYPG 2f2hA 246 :TPKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=57758 # 1ta0A.84.53 read from T0547.t04.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)P84 (1ta0A)V129 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1ta0A 130 :LKRPHVDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=57759 # 1t8tA.84.23 read from T0547.t04.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (1t8tA)V160 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1t8tA)V160 Warning: unaligning (T0547)V87 (1t8tA)K162 because T (delta_L) conformation "forbidden" or filtered. T0547 86 :K 1t8tA 161 :K T0547 88 :NQYPG 1t8tA 163 :GGTRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=57761 # 1ox0A.84.208 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1ox0A 191 :TEASITPF Number of specific fragments extracted= 1 number of extra gaps= 1 total=57762 # 1ua4A.84.34 read from T0547.t04.many.frag # found chain 1ua4A in template set Warning: unaligning (T0547)N88 (1ua4A)L39 because P (beta_P) conformation "forbidden" or filtered. T0547 84 :PLKV 1ua4A 35 :AIKY T0547 89 :QYPG 1ua4A 40 :DSKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=57764 # 1z9hA.84.18 read from T0547.t04.many.frag # found chain 1z9hA in template set Warning: unaligning (T0547)P84 (1z9hA)Q106 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1z9hA 107 :YKTCPFCS Number of specific fragments extracted= 1 number of extra gaps= 1 total=57765 # 1yq2A.84.367 read from T0547.t04.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE in next template residue (1yq2A)H369 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (1yq2A)H369 T0547 84 :P 1yq2A 367 :T T0547 87 :VNQYPG 1yq2A 370 :YPPHPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=57767 # 1qwgA.84.18 read from T0547.t04.many.frag # found chain 1qwgA in training set T0547 84 :PLKVNQYPG 1qwgA 19 :LDKGLPPKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=57768 # 2fqxA.84.67 read from T0547.t04.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 2fqxA 84 :CGSFLVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=57769 # 1zhvA.84.104 read from T0547.t04.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)P84 (1zhvA)L106 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1zhvA 107 :VRSNDLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=57770 # 1s95A.84.73 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)P84 (1s95A)C240 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1s95A)D242 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1s95A)H244 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1s95A)G245 because L (left) conformation "forbidden" or filtered. T0547 85 :L 1s95A 241 :G T0547 87 :V 1s95A 243 :T T0547 90 :YPG 1s95A 246 :QFY Number of specific fragments extracted= 3 number of extra gaps= 3 total=57773 # 1km4A.84.17 read from T0547.t04.many.frag # found chain 1km4A in template set T0547 84 :PLKVNQYPG 1km4A 18 :AMDLMNRDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=57774 # 1jftA.84.119 read from T0547.t04.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)P84 (1jftA)V121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1jftA)S124 because T (delta_L) conformation "forbidden" or filtered. T0547 85 :LK 1jftA 122 :MC T0547 88 :NQYPG 1jftA 125 :EYPEP Number of specific fragments extracted= 2 number of extra gaps= 2 total=57776 # 1q9jA.84.121 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)P84 (1q9jA)L122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1q9jA)A127 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :LKVN 1q9jA 123 :HHCM T0547 90 :YPG 1q9jA 128 :DGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=57778 # 1o08A.84.112 read from T0547.t04.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)P84 (1o08A)A1113 because D (zeta) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1o08A 1114 :SASKNGPF Number of specific fragments extracted= 1 number of extra gaps= 1 total=57779 # 1m2oA.84.126 read from T0547.t04.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)P84 (1m2oA)V127 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1m2oA)L130 because G (3-10) conformation "forbidden" or filtered. T0547 85 :LK 1m2oA 128 :VD T0547 88 :NQYPG 1m2oA 131 :TSETE Number of specific fragments extracted= 2 number of extra gaps= 2 total=57781 # 1floA.84.78 read from T0547.t04.many.frag # found chain 1floA in template set T0547 84 :PLKVNQYPG 1floA 80 :KYKTQKATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=57782 # 1xqwA.84.101 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)P84 (1xqwA)M102 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1xqwA)A105 because S (epsilon) conformation "forbidden" or filtered. T0547 85 :LK 1xqwA 103 :GS T0547 88 :NQYPG 1xqwA 106 :YGGAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=57784 # 1jqnA.84.395 read from T0547.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)P84 (1jqnA)R396 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1jqnA 397 :QESTRHTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=57785 # 1dp4A.84.83 read from T0547.t04.many.frag # found chain 1dp4A in template set Warning: unaligning (T0547)K86 (1dp4A)C86 because P (beta_P) conformation "forbidden" or filtered. T0547 84 :PL 1dp4A 84 :PG T0547 87 :VNQYPG 1dp4A 87 :VYSAAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=57787 # 1lw7A.84.33 read from T0547.t04.many.frag # found chain 1lw7A in template set Warning: unaligning (T0547)P84 (1lw7A)V90 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1lw7A 91 :IVCSDTVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=57788 # 2cvbA.84.38 read from T0547.t04.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)P84 (2cvbA)V39 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 2cvbA 40 :FMCNHCPY Number of specific fragments extracted= 1 number of extra gaps= 1 total=57789 # 1k4nA.84.46 read from T0547.t04.many.frag # found chain 1k4nA in training set Warning: unaligning (T0547)P84 (1k4nA)I47 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1k4nA 48 :SLRCHQNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=57790 # 1bouB.84.6 read from T0547.t04.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)P84 (1bouB)G7 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1bouB 8 :ITSSHIPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=57791 # 1pjr.84.30 read from T0547.t04.many.frag # found chain 1pjr in template set T0547 84 :PLKVNQYPG 1pjr 31 :AGAGSGKTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=57792 # 7odcA.85.67 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 85 :LKVNQYPGF 7odcA 68 :VKCNDSRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=57793 # 1knwA.85.52 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 85 :LKVNQYPGF 1knwA 53 :QKACSNIHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=57794 # 1vbkA.85.52 read from T0547.t04.many.frag # found chain 1vbkA in template set Warning: unaligning (T0547)N88 (1vbkA)N56 because G (3-10) conformation "forbidden" or filtered. T0547 85 :LKV 1vbkA 53 :VKT T0547 89 :QYPGF 1vbkA 57 :SPKEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=57796 # 2f2hA.85.241 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 85 :LKV 2f2hA 242 :IDG T0547 89 :QYPGF 2f2hA 246 :TPKAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57798 # 1ryoA.85.39 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :LKVN 1ryoA 40 :VKKA T0547 90 :YPGF 1ryoA 45 :YLDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=57800 # 1t8tA.85.24 read from T0547.t04.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1t8tA)V160 T0547 86 :KVNQYPGF 1t8tA 161 :KKGGTRAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=57801 # 1ta0A.85.54 read from T0547.t04.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)N88 (1ta0A)P133 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1ta0A)H134 because T (delta_L) conformation "forbidden" or filtered. T0547 85 :LKV 1ta0A 130 :LKR T0547 90 :YPGF 1ta0A 135 :VDEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=57803 # 1ox0A.85.209 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 85 :LKVNQYPGF 1ox0A 191 :TEASITPFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57804 # 1ua4A.85.35 read from T0547.t04.many.frag # found chain 1ua4A in template set Warning: unaligning (T0547)N88 (1ua4A)L39 because P (beta_P) conformation "forbidden" or filtered. T0547 85 :LKV 1ua4A 36 :IKY T0547 89 :QYPGF 1ua4A 40 :DSKDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=57806 # 1yq2A.85.368 read from T0547.t04.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE in next template residue (1yq2A)H369 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (1yq2A)H369 T0547 87 :VNQYPGF 1yq2A 370 :YPPHPRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=57807 # 1gqiA.85.111 read from T0547.t04.many.frag # found chain 1gqiA in training set T0547 85 :LKVNQYPGF 1gqiA 116 :VAANSDVGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57808 # 1z9hA.85.19 read from T0547.t04.many.frag # found chain 1z9hA in template set T0547 85 :LKVNQYPGF 1z9hA 107 :YKTCPFCSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57809 # 1jftA.85.120 read from T0547.t04.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)V87 (1jftA)S124 because T (delta_L) conformation "forbidden" or filtered. T0547 85 :LK 1jftA 122 :MC T0547 88 :NQYPGF 1jftA 125 :EYPEPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=57811 # 1qwgA.85.19 read from T0547.t04.many.frag # found chain 1qwgA in training set T0547 85 :LKVNQYPGF 1qwgA 20 :DKGLPPKFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57812 # 2fqxA.85.68 read from T0547.t04.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)K86 (2fqxA)G85 because S (epsilon) conformation "forbidden" or filtered. T0547 85 :L 2fqxA 84 :C T0547 87 :VNQYPGF 2fqxA 86 :SFLVEAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57814 # 1s95A.85.74 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)Q89 (1s95A)G245 because L (left) conformation "forbidden" or filtered. T0547 85 :LKVN 1s95A 241 :GDTH T0547 90 :YPGF 1s95A 246 :QFYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=57816 # 1o08A.85.113 read from T0547.t04.many.frag # found chain 1o08A in training set T0547 85 :LKVNQYPGF 1o08A 1114 :SASKNGPFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57817 # 1dp4A.85.84 read from T0547.t04.many.frag # found chain 1dp4A in template set T0547 85 :LKVNQYPGF 1dp4A 85 :GCVYSAAPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57818 # 1m2oA.85.127 read from T0547.t04.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)K86 (1m2oA)D129 because P (beta_P) conformation "forbidden" or filtered. T0547 85 :L 1m2oA 128 :V T0547 87 :VNQYPGF 1m2oA 130 :LTSETEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=57820 # 1km4A.85.18 read from T0547.t04.many.frag # found chain 1km4A in template set T0547 85 :LKVNQYPGF 1km4A 19 :MDLMNRDDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57821 1byrA expands to /projects/compbio/data/pdb/1byr.pdb.gz 1byrA:# 1byrA.85.33 read from T0547.t04.many.frag # adding 1byrA to template set # found chain 1byrA in template set T0547 85 :LKVNQYPGF 1byrA 34 :AYSFTAPDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=57822 # 1zhvA.85.105 read from T0547.t04.many.frag # found chain 1zhvA in training set T0547 85 :LKVNQYPGF 1zhvA 107 :VRSNDLEKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=57823 # 1u7iA.85.12 read from T0547.t04.many.frag # found chain 1u7iA in training set Warning: unaligning (T0547)K86 (1u7iA)Q12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1u7iA)G13 because S (epsilon) conformation "forbidden" or filtered. T0547 85 :L 1u7iA 11 :F T0547 88 :NQYPGF 1u7iA 14 :VQAEAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=57825 # 1floA.85.79 read from T0547.t04.many.frag # found chain 1floA in template set T0547 85 :LKVNQYPGF 1floA 81 :YKTQKATIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57826 # 1k4nA.85.47 read from T0547.t04.many.frag # found chain 1k4nA in training set Warning: unaligning (T0547)K86 (1k4nA)L49 because P (beta_P) conformation "forbidden" or filtered. T0547 85 :L 1k4nA 48 :S T0547 87 :VNQYPGF 1k4nA 50 :RCHQNAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=57828 # 1i4wA.85.31 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 85 :LKVNQYPGF 1i4wA 20 :FKYLWNPTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57829 # 1bouB.85.7 read from T0547.t04.many.frag # found chain 1bouB in template set T0547 85 :LKVNQYPGF 1bouB 8 :ITSSHIPAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57830 # 1fyeA.85.67 read from T0547.t04.many.frag # found chain 1fyeA in training set T0547 85 :LKVNQYPGF 1fyeA 68 :HRVADPLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57831 # 1ve4A.85.10 read from T0547.t04.many.frag # found chain 1ve4A in training set Warning: unaligning (T0547)V87 (1ve4A)G13 because S (epsilon) conformation "forbidden" or filtered. T0547 85 :LK 1ve4A 11 :PK T0547 88 :NQYPGF 1ve4A 14 :RMFREA Number of specific fragments extracted= 2 number of extra gaps= 1 total=57833 # 1q9jA.85.122 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)Q89 (1q9jA)A127 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :LKVN 1q9jA 123 :HHCM T0547 90 :YPGF 1q9jA 128 :DGHH Number of specific fragments extracted= 2 number of extra gaps= 1 total=57835 # 7odcA.86.68 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 86 :KVNQYPGFV 7odcA 69 :KCNDSRAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57836 # 1knwA.86.53 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 86 :KVNQYPGFV 1knwA 54 :KACSNIHIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57837 # 1vbkA.86.53 read from T0547.t04.many.frag # found chain 1vbkA in template set T0547 86 :KVNQYPGFV 1vbkA 54 :KTNSPKEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57838 # 1t8tA.86.25 read from T0547.t04.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)Q89 (1t8tA)G164 because T (delta_L) conformation "forbidden" or filtered. T0547 86 :KVN 1t8tA 161 :KKG T0547 90 :YPGFV 1t8tA 165 :TRALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=57840 # 2f2hA.86.242 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)K86 (2f2hA)D243 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 87 :V 2f2hA 244 :G T0547 89 :QYPGFV 2f2hA 246 :TPKAVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=57842 # 1ryoA.86.40 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 86 :KVN 1ryoA 41 :KKA T0547 90 :YPGFV 1ryoA 45 :YLDCI Number of specific fragments extracted= 2 number of extra gaps= 1 total=57844 # 1yq2A.86.369 read from T0547.t04.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (1yq2A)H369 T0547 87 :VNQYPGFV 1yq2A 370 :YPPHPRLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=57845 # 1ox0A.86.210 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 86 :KVNQYPGFV 1ox0A 192 :EASITPFAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=57846 # 1ua4A.86.36 read from T0547.t04.many.frag # found chain 1ua4A in template set T0547 86 :KVNQYPGFV 1ua4A 37 :KYLDSKDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=57847 # 1ta0A.86.55 read from T0547.t04.many.frag # found chain 1ta0A in template set T0547 86 :KVNQYPGFV 1ta0A 131 :KRPHVDEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57848 # 1z9hA.86.20 read from T0547.t04.many.frag # found chain 1z9hA in template set T0547 86 :KVNQYPGFV 1z9hA 108 :KTCPFCSKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57849 # 1gqiA.86.112 read from T0547.t04.many.frag # found chain 1gqiA in training set T0547 86 :KVNQYPGFV 1gqiA 117 :AANSDVGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57850 # 1jftA.86.121 read from T0547.t04.many.frag # found chain 1jftA in template set T0547 86 :KVNQYPGFV 1jftA 123 :CSEYPEPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57851 # 1qwgA.86.20 read from T0547.t04.many.frag # found chain 1qwgA in training set T0547 86 :KVNQYPGFV 1qwgA 21 :KGLPPKFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=57852 # 1byrA.86.34 read from T0547.t04.many.frag # found chain 1byrA in template set T0547 86 :KVNQYPGFV 1byrA 35 :YSFTAPDIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=57853 # 2fqxA.86.69 read from T0547.t04.many.frag # found chain 2fqxA in training set T0547 86 :KVNQYPGFV 2fqxA 85 :GSFLVEAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=57854 # 1m2oA.86.128 read from T0547.t04.many.frag # found chain 1m2oA in template set T0547 86 :KVNQYPGFV 1m2oA 129 :DLTSETENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57855 # 1s95A.86.75 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)V87 (1s95A)T243 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1s95A)G245 because L (left) conformation "forbidden" or filtered. T0547 86 :K 1s95A 242 :D T0547 88 :N 1s95A 244 :H T0547 90 :YPGFV 1s95A 246 :QFYDL Number of specific fragments extracted= 3 number of extra gaps= 2 total=57858 # 2a5yB.86.160 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)V87 (2a5yB)G162 because T (delta_L) conformation "forbidden" or filtered. T0547 86 :K 2a5yB 161 :A T0547 88 :NQYPGFV 2a5yB 163 :SGKSVIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=57860 # 1sauA.86.65 read from T0547.t04.many.frag # found chain 1sauA in training set Warning: unaligning (T0547)K86 (1sauA)V66 because Y (epsilon') conformation "forbidden" or filtered. T0547 87 :VNQYPGFV 1sauA 67 :APPVRMLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=57861 # 1i4wA.86.32 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 86 :KVNQYPGFV 1i4wA 21 :KYLWNPTVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=57862 # 1ve4A.86.11 read from T0547.t04.many.frag # found chain 1ve4A in training set Warning: unaligning (T0547)K86 (1ve4A)K12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1ve4A)G13 because S (epsilon) conformation "forbidden" or filtered. T0547 88 :NQYPGFV 1ve4A 14 :RMFREAY Number of specific fragments extracted= 1 number of extra gaps= 1 total=57863 # 1bouB.86.8 read from T0547.t04.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)K86 (1bouB)T9 because E (beta_S) conformation "forbidden" or filtered. T0547 87 :VNQYPGFV 1bouB 10 :SSHIPALG Number of specific fragments extracted= 1 number of extra gaps= 1 total=57864 # 1dp4A.86.85 read from T0547.t04.many.frag # found chain 1dp4A in template set T0547 86 :KVNQYPGFV 1dp4A 86 :CVYSAAPVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=57865 # 1pmi.86.109 read from T0547.t04.many.frag # found chain 1pmi in training set T0547 86 :KVNQYPGFV 1pmi 111 :QAHPDKKLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=57866 # 1zhvA.86.106 read from T0547.t04.many.frag # found chain 1zhvA in training set T0547 86 :KVNQYPGFV 1zhvA 108 :RSNDLEKTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57867 # 2c5qA.86.95 read from T0547.t04.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)K86 (2c5qA)Q96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y90 (2c5qA)G100 because Y (epsilon') conformation "forbidden" or filtered. T0547 87 :VNQ 2c5qA 97 :AMY T0547 91 :PGFV 2c5qA 101 :GLMS Number of specific fragments extracted= 2 number of extra gaps= 2 total=57869 # 1l7dA.86.14 read from T0547.t04.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)Q89 (1l7dA)I18 because Y (epsilon') conformation "forbidden" or filtered. T0547 86 :KVN 1l7dA 15 :RVA T0547 90 :YPGFV 1l7dA 19 :SPEVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=57871 # 1ynfA.86.220 read from T0547.t04.many.frag # found chain 1ynfA in template set Warning: unaligning (T0547)K86 (1ynfA)P210 because P (beta_P) conformation "forbidden" or filtered. T0547 87 :VNQYPGFV 1ynfA 211 :ARQTREAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=57872 # 1y44A.86.67 read from T0547.t04.many.frag # found chain 1y44A in template set T0547 86 :KVNQYPGFV 1y44A 68 :HVYGLPGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57873 # 1knwA.87.54 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 87 :VNQYPGFVK 1knwA 55 :ACSNIHILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=57874 # 7odcA.87.69 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 87 :VNQYPGFVK 7odcA 70 :CNDSRAIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=57875 # 1yq2A.87.370 read from T0547.t04.many.frag # found chain 1yq2A in template set T0547 87 :VNQYPGFVK 1yq2A 370 :YPPHPRLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=57876 # 1ox0A.87.211 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 87 :VNQYPGFVK 1ox0A 193 :ASITPFAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57877 # 2f2hA.87.243 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 87 :V 2f2hA 244 :G T0547 89 :QYPGFVK 2f2hA 246 :TPKAVLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=57879 # 1ryoA.87.41 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 87 :VN 1ryoA 42 :KA T0547 90 :YPGFVK 1ryoA 45 :YLDCIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=57881 # 1vbkA.87.54 read from T0547.t04.many.frag # found chain 1vbkA in template set T0547 87 :VNQYPGFVK 1vbkA 55 :TNSPKEAAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=57882 # 1t8tA.87.26 read from T0547.t04.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)V87 (1t8tA)K162 because T (delta_L) conformation "forbidden" or filtered. T0547 88 :NQYPGFVK 1t8tA 163 :GGTRALLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=57883 # 1ta0A.87.56 read from T0547.t04.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)Q89 (1ta0A)H134 because T (delta_L) conformation "forbidden" or filtered. T0547 87 :VN 1ta0A 132 :RP T0547 90 :YPGFVK 1ta0A 135 :VDEFLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=57885 # 1jftA.87.122 read from T0547.t04.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)V87 (1jftA)S124 because T (delta_L) conformation "forbidden" or filtered. T0547 88 :NQYPGFVK 1jftA 125 :EYPEPLLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=57886 # 1ua4A.87.37 read from T0547.t04.many.frag # found chain 1ua4A in template set Warning: unaligning (T0547)Q89 (1ua4A)D40 because E (beta_S) conformation "forbidden" or filtered. T0547 87 :VN 1ua4A 38 :YL T0547 90 :YPGFVK 1ua4A 41 :SKDLEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=57888 # 1byrA.87.35 read from T0547.t04.many.frag # found chain 1byrA in template set T0547 87 :VNQYPGFVK 1byrA 36 :SFTAPDIMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57889 # 1l7dA.87.15 read from T0547.t04.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)Q89 (1l7dA)I18 because Y (epsilon') conformation "forbidden" or filtered. T0547 87 :VN 1l7dA 16 :VA T0547 90 :YPGFVK 1l7dA 19 :SPEVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=57891 # 1n0qA.87.43 read from T0547.t04.many.frag # found chain 1n0qA in training set Warning: unaligning (T0547)Q89 (1n0qA)G46 because L (left) conformation "forbidden" or filtered. T0547 87 :VN 1n0qA 44 :RN T0547 90 :YPGFVK 1n0qA 47 :HLEVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=57893 # 1izcA.87.48 read from T0547.t04.many.frag # found chain 1izcA in training set T0547 87 :VNQYPGFVK 1izcA 49 :GIPSTFVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57894 # 1ynfA.87.221 read from T0547.t04.many.frag # found chain 1ynfA in template set Warning: unaligning (T0547)Q89 (1ynfA)Q213 because E (beta_S) conformation "forbidden" or filtered. T0547 87 :VN 1ynfA 211 :AR T0547 90 :YPGFVK 1ynfA 214 :TREASE Number of specific fragments extracted= 2 number of extra gaps= 1 total=57896 # 1y44A.87.68 read from T0547.t04.many.frag # found chain 1y44A in template set T0547 87 :VNQYPGFVK 1y44A 69 :VYGLPGLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=57897 # 1qwgA.87.21 read from T0547.t04.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)V87 (1qwgA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1qwgA)P24 because P (beta_P) conformation "forbidden" or filtered. T0547 88 :N 1qwgA 23 :L T0547 90 :YPGFVK 1qwgA 25 :PKFVED Number of specific fragments extracted= 2 number of extra gaps= 2 total=57899 # 1z9hA.87.21 read from T0547.t04.many.frag # found chain 1z9hA in template set T0547 87 :VNQYPGFVK 1z9hA 109 :TCPFCSKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=57900 # 1t6cA.87.95 read from T0547.t04.many.frag # found chain 1t6cA in training set T0547 87 :VNQYPGFVK 1t6cA 93 :AKNAEEFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=57901 # 1vkyA.87.188 read from T0547.t04.many.frag # found chain 1vkyA in template set T0547 87 :VNQYPGFVK 1vkyA 177 :LHFTPELIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=57902 # 1w96A.87.140 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 87 :VNQYPGFVK 1w96A 153 :ASENPLLPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=57903 # 1pmi.87.110 read from T0547.t04.many.frag # found chain 1pmi in training set T0547 87 :VNQYPGFVK 1pmi 112 :AHPDKKLGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57904 # 1z7aA.87.105 read from T0547.t04.many.frag # found chain 1z7aA in training set T0547 87 :VNQYPGFVK 1z7aA 106 :AQRNPEVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=57905 # 1sauA.87.66 read from T0547.t04.many.frag # found chain 1sauA in training set Warning: unaligning (T0547)Q89 (1sauA)P69 because P (beta_P) conformation "forbidden" or filtered. T0547 87 :VN 1sauA 67 :AP T0547 90 :YPGFVK 1sauA 70 :VRMLVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=57907 # 1dp4A.87.86 read from T0547.t04.many.frag # found chain 1dp4A in template set T0547 87 :VNQYPGFVK 1dp4A 87 :VYSAAPVGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=57908 # 2c5qA.87.96 read from T0547.t04.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)N88 (2c5qA)M98 because G (3-10) conformation "forbidden" or filtered. T0547 87 :V 2c5qA 97 :A T0547 89 :QYPGFVK 2c5qA 99 :YGGLMST Number of specific fragments extracted= 2 number of extra gaps= 1 total=57910 # 1gqiA.87.113 read from T0547.t04.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)V87 (1gqiA)A118 because Y (epsilon') conformation "forbidden" or filtered. T0547 88 :NQYPGFVK 1gqiA 119 :NSDVGVLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=57911 # 1s95A.87.76 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)V87 (1s95A)T243 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1s95A)H244 because L (left) conformation "forbidden" or filtered. T0547 89 :QYPGFVK 1s95A 245 :GQFYDLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=57912 # 2al2A.87.82 read from T0547.t04.many.frag # found chain 2al2A in template set T0547 87 :VNQYPGFVK 2al2A 83 :VKDQKAVDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=57913 # 1knwA.88.55 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 88 :NQYPGFVKN 1knwA 56 :CSNIHILRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57914 # 7odcA.88.70 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 88 :NQYPGFVKN 7odcA 71 :NDSRAIVST Number of specific fragments extracted= 1 number of extra gaps= 0 total=57915 # 1yq2A.88.371 read from T0547.t04.many.frag # found chain 1yq2A in template set T0547 88 :NQYPGFVKN 1yq2A 371 :PPHPRLLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57916 # 1ox0A.88.212 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 88 :NQYPGFVKN 1ox0A 194 :SITPFAIAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=57917 # 1l7dA.88.16 read from T0547.t04.many.frag # found chain 1l7dA in template set T0547 88 :NQYPGFVKN 1l7dA 17 :AISPEVVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57918 # 1n0qA.88.44 read from T0547.t04.many.frag # found chain 1n0qA in training set Warning: unaligning (T0547)N88 (1n0qA)N45 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1n0qA)G46 because L (left) conformation "forbidden" or filtered. T0547 90 :YPGFVKN 1n0qA 47 :HLEVVKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=57919 # 1vkyA.88.189 read from T0547.t04.many.frag # found chain 1vkyA in template set T0547 88 :NQYPGFVKN 1vkyA 178 :HFTPELIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57920 # 1z7aA.88.106 read from T0547.t04.many.frag # found chain 1z7aA in training set T0547 88 :NQYPGFVKN 1z7aA 107 :QRNPEVIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57921 # 1jftA.88.123 read from T0547.t04.many.frag # found chain 1jftA in template set T0547 88 :NQYPGFVKN 1jftA 125 :EYPEPLLAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=57922 # 1ryoA.88.42 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 88 :N 1ryoA 43 :A T0547 90 :YPGFVKN 1ryoA 45 :YLDCIRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=57924 # 2f2hA.88.244 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 89 :QYPGFVKN 2f2hA 246 :TPKAVLDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=57925 # 1ta0A.88.57 read from T0547.t04.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)Q89 (1ta0A)H134 because T (delta_L) conformation "forbidden" or filtered. T0547 88 :N 1ta0A 133 :P T0547 90 :YPGFVKN 1ta0A 135 :VDEFLQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=57927 # 1w96A.88.141 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 88 :NQYPGFVKN 1w96A 154 :SENPLLPEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57928 # 1ua4A.88.38 read from T0547.t04.many.frag # found chain 1ua4A in template set T0547 88 :NQYPGFVKN 1ua4A 39 :LDSKDLEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=57929 # 1t6cA.88.96 read from T0547.t04.many.frag # found chain 1t6cA in training set T0547 88 :NQYPGFVKN 1t6cA 94 :KNAEEFLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=57930 # 1dp4A.88.87 read from T0547.t04.many.frag # found chain 1dp4A in template set T0547 88 :NQYPGFVKN 1dp4A 88 :YSAAPVGRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=57931 # 1vbkA.88.55 read from T0547.t04.many.frag # found chain 1vbkA in template set T0547 88 :NQYPGFVKN 1vbkA 56 :NSPKEAANV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57932 # 1ve4A.88.13 read from T0547.t04.many.frag # found chain 1ve4A in training set T0547 88 :NQYPGFVKN 1ve4A 14 :RMFREAYEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57933 # 1t8tA.88.27 read from T0547.t04.many.frag # found chain 1t8tA in template set T0547 88 :NQYPGFVKN 1t8tA 163 :GGTRALLEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=57934 # 2c5qA.88.97 read from T0547.t04.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)Y90 (2c5qA)G100 because Y (epsilon') conformation "forbidden" or filtered. T0547 88 :NQ 2c5qA 98 :MY T0547 91 :PGFVKN 2c5qA 101 :GLMSTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=57936 # 1byrA.88.36 read from T0547.t04.many.frag # found chain 1byrA in template set T0547 88 :NQYPGFVKN 1byrA 37 :FTAPDIMKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57937 # 1ynfA.88.222 read from T0547.t04.many.frag # found chain 1ynfA in template set T0547 88 :NQYPGFVKN 1ynfA 212 :RQTREASEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57938 # 1izcA.88.49 read from T0547.t04.many.frag # found chain 1izcA in training set T0547 88 :NQYPGFVKN 1izcA 50 :IPSTFVTKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57939 # 1i4wA.88.34 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 88 :NQYPGFVKN 1i4wA 23 :LWNPTVYNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57940 # 1pmi.88.111 read from T0547.t04.many.frag # found chain 1pmi in training set T0547 88 :NQYPGFVKN 1pmi 113 :HPDKKLGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=57941 # 1w8sA.88.40 read from T0547.t04.many.frag # found chain 1w8sA in template set T0547 88 :NQYPGFVKN 1w8sA 41 :ADPEYILRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57942 # 1sauA.88.67 read from T0547.t04.many.frag # found chain 1sauA in training set T0547 88 :NQYPGFVKN 1sauA 68 :PPVRMLVKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=57943 # 2al2A.88.83 read from T0547.t04.many.frag # found chain 2al2A in template set T0547 88 :NQYPGFVKN 2al2A 84 :KDQKAVDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=57944 # 1zp4A.88.67 read from T0547.t04.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)Q89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zp4A)R69 T0547 90 :YPGFVKN 1zp4A 70 :THSIIKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=57945 # 1y44A.88.69 read from T0547.t04.many.frag # found chain 1y44A in template set T0547 88 :NQYPGFVKN 1y44A 70 :YGLPGLLGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=57946 # 1knwA.89.56 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 89 :QYPGFVKNL 1knwA 57 :SNIHILRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=57947 # 7odcA.89.71 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 89 :QYPGFVKNL 7odcA 72 :DSRAIVSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57948 # 1yq2A.89.372 read from T0547.t04.many.frag # found chain 1yq2A in template set T0547 89 :QYPGFVKNL 1yq2A 372 :PHPRLLDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57949 # 1n0qA.89.45 read from T0547.t04.many.frag # found chain 1n0qA in training set Warning: unaligning (T0547)Q89 (1n0qA)G46 because L (left) conformation "forbidden" or filtered. T0547 90 :YPGFVKNL 1n0qA 47 :HLEVVKLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=57950 # 1z7aA.89.107 read from T0547.t04.many.frag # found chain 1z7aA in training set T0547 89 :QYPGFVKNL 1z7aA 108 :RNPEVIRAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=57951 # 1l7dA.89.17 read from T0547.t04.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)Q89 (1l7dA)I18 because Y (epsilon') conformation "forbidden" or filtered. T0547 90 :YPGFVKNL 1l7dA 19 :SPEVVKKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=57952 # 1ox0A.89.213 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 89 :QYPGFVKNL 1ox0A 195 :ITPFAIAGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=57953 # 1ryoA.89.43 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 90 :YPGFVKNL 1ryoA 45 :YLDCIRAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=57954 # 1vkyA.89.190 read from T0547.t04.many.frag # found chain 1vkyA in template set T0547 89 :QYPGFVKNL 1vkyA 179 :FTPELIEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57955 # 1zp4A.89.68 read from T0547.t04.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)Q89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zp4A)R69 T0547 90 :YPGFVKNL 1zp4A 70 :THSIIKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=57956 # 2f2hA.89.245 read from T0547.t04.many.frag # found chain 2f2hA in template set T0547 89 :QYPGFVKNL 2f2hA 246 :TPKAVLDRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=57957 # 1jftA.89.124 read from T0547.t04.many.frag # found chain 1jftA in template set T0547 89 :QYPGFVKNL 1jftA 126 :YPEPLLAML Number of specific fragments extracted= 1 number of extra gaps= 0 total=57958 # 1dp4A.89.88 read from T0547.t04.many.frag # found chain 1dp4A in template set T0547 89 :QYPGFVKNL 1dp4A 89 :SAAPVGRFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=57959 # 2cfeA.89.131 read from T0547.t04.many.frag # found chain 2cfeA in training set T0547 89 :QYPGFVKNL 2cfeA 132 :DGMNVVKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=57960 # 1ta0A.89.58 read from T0547.t04.many.frag # found chain 1ta0A in template set T0547 89 :QYPGFVKNL 1ta0A 134 :HVDEFLQRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=57961 # 1t6cA.89.97 read from T0547.t04.many.frag # found chain 1t6cA in training set T0547 89 :QYPGFVKNL 1t6cA 95 :NAEEFLERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57962 # 1rqlA.89.106 read from T0547.t04.many.frag # found chain 1rqlA in template set T0547 89 :QYPGFVKNL 1rqlA 107 :AVKEVIASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57963 # 1izcA.89.50 read from T0547.t04.many.frag # found chain 1izcA in training set T0547 89 :QYPGFVKNL 1izcA 51 :PSTFVTKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57964 # 1w96A.89.142 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 89 :QYPGFVKNL 1w96A 155 :ENPLLPEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57965 # 1ru3A.89.80 read from T0547.t04.many.frag # found chain 1ru3A in template set T0547 89 :QYPGFVKNL 1ru3A 81 :DMVPILNRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=57966 # 1ynfA.89.223 read from T0547.t04.many.frag # found chain 1ynfA in template set T0547 89 :QYPGFVKNL 1ynfA 213 :QTREASEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57967 # 1ve4A.89.14 read from T0547.t04.many.frag # found chain 1ve4A in training set T0547 89 :QYPGFVKNL 1ve4A 15 :MFREAYEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57968 # 1pu6A.89.2 read from T0547.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0547)Q89 (1pu6A)D3 because Y (epsilon') conformation "forbidden" or filtered. T0547 90 :YPGFVKNL 1pu6A 4 :SFEILKAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=57969 # 1bu8A.89.86 read from T0547.t04.many.frag # found chain 1bu8A in training set T0547 89 :QYPGFVKNL 1bu8A 85 :WLLDMCKKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=57970 # 1vbkA.89.56 read from T0547.t04.many.frag # found chain 1vbkA in template set Warning: unaligning (T0547)Q89 (1vbkA)S57 because D (zeta) conformation "forbidden" or filtered. T0547 90 :YPGFVKNL 1vbkA 58 :PKEAANVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=57971 # 1yxyA.89.36 read from T0547.t04.many.frag # found chain 1yxyA in training set T0547 89 :QYPGFVKNL 1yxyA 37 :IMPLMAKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57972 # 1byrA.89.37 read from T0547.t04.many.frag # found chain 1byrA in template set T0547 89 :QYPGFVKNL 1byrA 38 :TAPDIMKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57973 # 1g60A.89.77 read from T0547.t04.many.frag # found chain 1g60A in template set T0547 89 :QYPGFVKNL 1g60A 78 :NCAFICQYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57974 # 1ua4A.89.39 read from T0547.t04.many.frag # found chain 1ua4A in template set T0547 89 :QYPGFVKNL 1ua4A 40 :DSKDLEERI Number of specific fragments extracted= 1 number of extra gaps= 0 total=57975 # 2c5qA.89.98 read from T0547.t04.many.frag # found chain 2c5qA in training set T0547 89 :QYPGFVKNL 2c5qA 99 :YGGLMSTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57976 # 1knwA.90.57 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 90 :YPGFVKNLV 1knwA 58 :NIHILRLMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=57977 # 7odcA.90.72 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 90 :YPGFVKNLV 7odcA 73 :SRAIVSTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57978 # 1z7aA.90.108 read from T0547.t04.many.frag # found chain 1z7aA in training set T0547 90 :YPGFVKNLV 1z7aA 109 :NPEVIRAMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57979 # 1n0qA.90.46 read from T0547.t04.many.frag # found chain 1n0qA in training set T0547 90 :YPGFVKNLV 1n0qA 47 :HLEVVKLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=57980 # 1l7dA.90.18 read from T0547.t04.many.frag # found chain 1l7dA in template set T0547 90 :YPGFVKNLV 1l7dA 19 :SPEVVKKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=57981 # 1yq2A.90.373 read from T0547.t04.many.frag # found chain 1yq2A in template set T0547 90 :YPGFVKNLV 1yq2A 373 :HPRLLDLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=57982 # 1vkyA.90.191 read from T0547.t04.many.frag # found chain 1vkyA in template set T0547 90 :YPGFVKNLV 1vkyA 180 :TPELIEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57983 # 1ox0A.90.214 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 90 :YPGFVKNLV 1ox0A 196 :TPFAIAGFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=57984 # 2cfeA.90.132 read from T0547.t04.many.frag # found chain 2cfeA in training set T0547 90 :YPGFVKNLV 2cfeA 133 :GMNVVKAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=57985 # 1zp4A.90.69 read from T0547.t04.many.frag # found chain 1zp4A in template set T0547 90 :YPGFVKNLV 1zp4A 70 :THSIIKGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57986 # 1rqlA.90.107 read from T0547.t04.many.frag # found chain 1rqlA in template set T0547 90 :YPGFVKNLV 1rqlA 108 :VKEVIASLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=57987 # 1ru3A.90.81 read from T0547.t04.many.frag # found chain 1ru3A in template set T0547 90 :YPGFVKNLV 1ru3A 82 :MVPILNRMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=57988 # 1jftA.90.125 read from T0547.t04.many.frag # found chain 1jftA in template set T0547 90 :YPGFVKNLV 1jftA 127 :PEPLLAMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=57989 # 1izcA.90.51 read from T0547.t04.many.frag # found chain 1izcA in training set T0547 90 :YPGFVKNLV 1izcA 52 :STFVTKVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57990 # 1t6cA.90.98 read from T0547.t04.many.frag # found chain 1t6cA in training set T0547 90 :YPGFVKNLV 1t6cA 96 :AEEFLERVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57991 # 1ryoA.90.44 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 90 :YPGFVKNLV 1ryoA 45 :YLDCIRAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57992 # 1bu8A.90.87 read from T0547.t04.many.frag # found chain 1bu8A in training set T0547 90 :YPGFVKNLV 1bu8A 86 :LLDMCKKMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=57993 # 1w96A.90.143 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 90 :YPGFVKNLV 1w96A 156 :NPLLPEKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=57994 # 1sr9A.90.120 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 90 :YPGFVKNLV 1sr9A 121 :DFDFVREII Number of specific fragments extracted= 1 number of extra gaps= 0 total=57995 # 1yxyA.90.37 read from T0547.t04.many.frag # found chain 1yxyA in training set T0547 90 :YPGFVKNLV 1yxyA 38 :MPLMAKAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=57996 # 1ynfA.90.224 read from T0547.t04.many.frag # found chain 1ynfA in template set T0547 90 :YPGFVKNLV 1ynfA 214 :TREASEAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=57997 # 1ve4A.90.15 read from T0547.t04.many.frag # found chain 1ve4A in training set T0547 90 :YPGFVKNLV 1ve4A 16 :FREAYEVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57998 # 1pu6A.90.3 read from T0547.t04.many.frag # found chain 1pu6A in training set T0547 90 :YPGFVKNLV 1pu6A 4 :SFEILKALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=57999 # 1ua4A.90.40 read from T0547.t04.many.frag # found chain 1ua4A in template set T0547 90 :YPGFVKNLV 1ua4A 41 :SKDLEERII Number of specific fragments extracted= 1 number of extra gaps= 0 total=58000 # 1dp4A.90.89 read from T0547.t04.many.frag # found chain 1dp4A in template set T0547 90 :YPGFVKNLV 1dp4A 90 :AAPVGRFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58001 # 2al2A.90.85 read from T0547.t04.many.frag # found chain 2al2A in template set T0547 90 :YPGFVKNLV 2al2A 86 :QKAVDDFLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58002 # 1w8sA.90.42 read from T0547.t04.many.frag # found chain 1w8sA in template set T0547 90 :YPGFVKNLV 1w8sA 43 :PEYILRLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58003 # 2f2hA.90.246 read from T0547.t04.many.frag # found chain 2f2hA in template set T0547 90 :YPGFVKNLV 2f2hA 247 :PKAVLDRYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=58004 # 1g60A.90.78 read from T0547.t04.many.frag # found chain 1g60A in template set T0547 90 :YPGFVKNLV 1g60A 79 :CAFICQYLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58005 # 2c5qA.90.99 read from T0547.t04.many.frag # found chain 2c5qA in training set T0547 90 :YPGFVKNLV 2c5qA 100 :GGLMSTRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=58006 # 1z7aA.91.109 read from T0547.t04.many.frag # found chain 1z7aA in training set T0547 91 :PGFVKNLVK 1z7aA 110 :PEVIRAMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58007 # 1knwA.91.58 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 91 :PGFVKNLVK 1knwA 59 :IHILRLMRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58008 # 1l7dA.91.19 read from T0547.t04.many.frag # found chain 1l7dA in template set T0547 91 :PGFVKNLVK 1l7dA 20 :PEVVKKLVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58009 # 1n0qA.91.47 read from T0547.t04.many.frag # found chain 1n0qA in training set T0547 91 :PGFVKNLVK 1n0qA 48 :LEVVKLLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58010 # 7odcA.91.73 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 91 :PGFVKNLVK 7odcA 74 :RAIVSTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58011 # 1rqlA.91.108 read from T0547.t04.many.frag # found chain 1rqlA in template set T0547 91 :PGFVKNLVK 1rqlA 109 :KEVIASLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58012 # 1yq2A.91.374 read from T0547.t04.many.frag # found chain 1yq2A in template set T0547 91 :PGFVKNLVK 1yq2A 374 :PRLLDLADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58013 # 2cfeA.91.133 read from T0547.t04.many.frag # found chain 2cfeA in training set T0547 91 :PGFVKNLVK 2cfeA 134 :MNVVKAIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58014 # 1ox0A.91.215 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 91 :PGFVKNLVK 1ox0A 197 :PFAIAGFQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58015 # 1zp4A.91.70 read from T0547.t04.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)K99 (1zp4A)D79 because G (3-10) conformation "forbidden" or filtered. T0547 91 :PGFVKNLV 1zp4A 71 :HSIIKGIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=58016 # 1vkyA.91.192 read from T0547.t04.many.frag # found chain 1vkyA in template set T0547 91 :PGFVKNLVK 1vkyA 181 :PELIEKLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58017 # 1bu8A.91.88 read from T0547.t04.many.frag # found chain 1bu8A in training set T0547 91 :PGFVKNLVK 1bu8A 87 :LDMCKKMFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=58018 # 1pu6A.91.4 read from T0547.t04.many.frag # found chain 1pu6A in training set T0547 91 :PGFVKNLVK 1pu6A 5 :FEILKALKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=58019 # 1yxyA.91.38 read from T0547.t04.many.frag # found chain 1yxyA in training set T0547 91 :PGFVKNLVK 1yxyA 39 :PLMAKAAQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58020 # 1ru3A.91.82 read from T0547.t04.many.frag # found chain 1ru3A in template set T0547 91 :PGFVKNLVK 1ru3A 83 :VPILNRMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58021 # 1izcA.91.52 read from T0547.t04.many.frag # found chain 1izcA in training set T0547 91 :PGFVKNLVK 1izcA 53 :TFVTKVLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58022 # 1ynfA.91.225 read from T0547.t04.many.frag # found chain 1ynfA in template set T0547 91 :PGFVKNLVK 1ynfA 215 :REASEAVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58023 # 1t6cA.91.99 read from T0547.t04.many.frag # found chain 1t6cA in training set T0547 91 :PGFVKNLVK 1t6cA 97 :EEFLERVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58024 # 1w96A.91.144 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 91 :PGFVKNLVK 1w96A 157 :PLLPEKLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=58025 # 1sr9A.91.121 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 91 :PGFVKNLVK 1sr9A 122 :FDFVREIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58026 # 1jftA.91.126 read from T0547.t04.many.frag # found chain 1jftA in template set T0547 91 :PGFVKNLVK 1jftA 128 :EPLLAMLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58027 # 1ryoA.91.45 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 91 :PGFVKNLVK 1ryoA 46 :LDCIRAIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58028 # 1vkfA.91.45 read from T0547.t04.many.frag # found chain 1vkfA in training set T0547 91 :PGFVKNLVK 1vkfA 34 :KFHLKILKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=58029 # 1wbhA.91.54 read from T0547.t04.many.frag # found chain 1wbhA in training set T0547 91 :PGFVKNLVK 1wbhA 54 :VDAIRAIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58030 # 1g8mA.91.18 read from T0547.t04.many.frag # found chain 1g8mA in training set T0547 91 :PGFVKNLVK 1g8mA 19 :VEFARSLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58031 # 1dp4A.91.90 read from T0547.t04.many.frag # found chain 1dp4A in template set T0547 91 :PGFVKNLVK 1dp4A 91 :APVGRFTAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=58032 # 1g60A.91.79 read from T0547.t04.many.frag # found chain 1g60A in template set T0547 91 :PGFVKNLVK 1g60A 80 :AFICQYLVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=58033 # 1ta0A.91.60 read from T0547.t04.many.frag # found chain 1ta0A in template set T0547 91 :PGFVKNLVK 1ta0A 136 :DEFLQRMGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58034 # 1d4oA.91.42 read from T0547.t04.many.frag # found chain 1d4oA in training set T0547 91 :PGFVKNLVK 1d4oA 43 :ADLVKMLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58035 # 1q7zA.91.128 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 91 :PGFVKNLVK 1q7zA 129 :RETVEIMVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58036 # 1knwA.92.59 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 92 :GFVKNLVKL 1knwA 60 :HILRLMREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=58037 # 7odcA.92.74 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 92 :GFVKNLVKL 7odcA 75 :AIVSTLAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58038 # 1z7aA.92.110 read from T0547.t04.many.frag # found chain 1z7aA in training set T0547 92 :GFVKNLVKL 1z7aA 111 :EVIRAMVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=58039 # 1l7dA.92.20 read from T0547.t04.many.frag # found chain 1l7dA in template set T0547 92 :GFVKNLVKL 1l7dA 21 :EVVKKLVGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58040 # 1n0qA.92.48 read from T0547.t04.many.frag # found chain 1n0qA in training set T0547 92 :GFVKNLVKL 1n0qA 49 :EVVKLLLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58041 # 1rqlA.92.109 read from T0547.t04.many.frag # found chain 1rqlA in template set T0547 92 :GFVKNLVKL 1rqlA 110 :EVIASLRER Number of specific fragments extracted= 1 number of extra gaps= 0 total=58042 # 1vkyA.92.193 read from T0547.t04.many.frag # found chain 1vkyA in template set T0547 92 :GFVKNLVKL 1vkyA 182 :ELIEKLKKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58043 # 1ox0A.92.216 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 92 :GFVKNLVKL 1ox0A 198 :FAIAGFQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58044 # 1yq2A.92.375 read from T0547.t04.many.frag # found chain 1yq2A in template set T0547 92 :GFVKNLVKL 1yq2A 375 :RLLDLADEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=58045 # 2cfeA.92.134 read from T0547.t04.many.frag # found chain 2cfeA in training set T0547 92 :GFVKNLVKL 2cfeA 135 :NVVKAIEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58046 # 1pu6A.92.5 read from T0547.t04.many.frag # found chain 1pu6A in training set T0547 92 :GFVKNLVKL 1pu6A 6 :EILKALKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58047 # 1jftA.92.127 read from T0547.t04.many.frag # found chain 1jftA in template set T0547 92 :GFVKNLVKL 1jftA 129 :PLLAMLEEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=58048 # 1zp4A.92.71 read from T0547.t04.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)K99 (1zp4A)D79 because G (3-10) conformation "forbidden" or filtered. T0547 92 :GFVKNLV 1zp4A 72 :SIIKGIK T0547 100 :L 1zp4A 80 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=58050 # 1q7zA.92.129 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 92 :GFVKNLVKL 1q7zA 130 :ETVEIMVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58051 # 1ru3A.92.83 read from T0547.t04.many.frag # found chain 1ru3A in template set T0547 92 :GFVKNLVKL 1ru3A 84 :PILNRMRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=58052 # 1d4oA.92.43 read from T0547.t04.many.frag # found chain 1d4oA in training set T0547 92 :GFVKNLVKL 1d4oA 44 :DLVKMLSEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=58053 # 1g8mA.92.19 read from T0547.t04.many.frag # found chain 1g8mA in training set T0547 92 :GFVKNLVKL 1g8mA 20 :EFARSLNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58054 # 1yxyA.92.39 read from T0547.t04.many.frag # found chain 1yxyA in training set T0547 92 :GFVKNLVKL 1yxyA 40 :LMAKAAQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58055 # 1w96A.92.145 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 92 :GFVKNLVKL 1w96A 158 :LLPEKLSQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=58056 # 1vkfA.92.46 read from T0547.t04.many.frag # found chain 1vkfA in training set T0547 92 :GFVKNLVKL 1vkfA 35 :FHLKILKDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58057 # 1sr9A.92.122 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 92 :GFVKNLVKL 1sr9A 123 :DFVREIIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=58058 # 1bu8A.92.89 read from T0547.t04.many.frag # found chain 1bu8A in training set T0547 92 :GFVKNLVKL 1bu8A 88 :DMCKKMFQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58059 # 1t6cA.92.100 read from T0547.t04.many.frag # found chain 1t6cA in training set T0547 92 :GFVKNLVKL 1t6cA 98 :EFLERVKRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58060 # 1izcA.92.53 read from T0547.t04.many.frag # found chain 1izcA in training set T0547 92 :GFVKNLVKL 1izcA 54 :FVTKVLAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=58061 # 1ve4A.92.17 read from T0547.t04.many.frag # found chain 1ve4A in training set T0547 92 :GFVKNLVKL 1ve4A 18 :EAYEVLKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58062 # 2bbrA.92.43 read from T0547.t04.many.frag # found chain 2bbrA in training set T0547 92 :GFVKNLVKL 2bbrA 44 :QALCSLSQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=58063 # 1ynfA.92.226 read from T0547.t04.many.frag # found chain 1ynfA in template set T0547 92 :GFVKNLVKL 1ynfA 216 :EASEAVARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58064 # 1xrsA.92.60 read from T0547.t04.many.frag # found chain 1xrsA in template set T0547 92 :GFVKNLVKL 1xrsA 61 :IVVDHIKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=58065 # 2c5qA.92.101 read from T0547.t04.many.frag # found chain 2c5qA in training set T0547 92 :GFVKNLVKL 2c5qA 102 :LMSTRAQYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58066 # 1wbhA.92.55 read from T0547.t04.many.frag # found chain 1wbhA in training set T0547 92 :GFVKNLVKL 1wbhA 55 :DAIRAIAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58067 # 7odcA.93.75 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 93 :FVKNLVKLG 7odcA 76 :IVSTLAAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58068 # 1n0qA.93.49 read from T0547.t04.many.frag # found chain 1n0qA in training set T0547 93 :FVKNLVKLG 1n0qA 50 :VVKLLLEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58069 # 1knwA.93.60 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 93 :FVKNLVKLG 1knwA 61 :ILRLMREQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58070 # 1z7aA.93.111 read from T0547.t04.many.frag # found chain 1z7aA in training set T0547 93 :FVKNLVKLG 1z7aA 112 :VIRAMVADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58071 # 1rqlA.93.110 read from T0547.t04.many.frag # found chain 1rqlA in template set T0547 93 :FVKNLVKLG 1rqlA 111 :VIASLRERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58072 # 1l7dA.93.21 read from T0547.t04.many.frag # found chain 1l7dA in template set T0547 93 :FVKNLVKLG 1l7dA 22 :VVKKLVGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58073 # 1vkyA.93.194 read from T0547.t04.many.frag # found chain 1vkyA in template set T0547 93 :FVKNLVKLG 1vkyA 183 :LIEKLKKKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58074 # 2cfeA.93.135 read from T0547.t04.many.frag # found chain 2cfeA in training set T0547 93 :FVKNLVKLG 2cfeA 136 :VVKAIEAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58075 # 1pu6A.93.6 read from T0547.t04.many.frag # found chain 1pu6A in training set T0547 93 :FVKNLVKLG 1pu6A 7 :ILKALKSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=58076 # 1ox0A.93.217 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 93 :FVKNLVKLG 1ox0A 199 :AIAGFQALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=58077 # 1vkfA.93.47 read from T0547.t04.many.frag # found chain 1vkfA in training set T0547 93 :FVKNLVKLG 1vkfA 36 :HLKILKDRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58078 # 1g8mA.93.20 read from T0547.t04.many.frag # found chain 1g8mA in training set T0547 93 :FVKNLVKLG 1g8mA 21 :FARSLNALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58079 # 1ru3A.93.84 read from T0547.t04.many.frag # found chain 1ru3A in template set T0547 93 :FVKNLVKLG 1ru3A 85 :ILNRMRAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58080 # 1q7zA.93.130 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 93 :FVKNLVKLG 1q7zA 131 :TVEIMVEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58081 # 1zp4A.93.72 read from T0547.t04.many.frag # found chain 1zp4A in template set T0547 93 :FVKNLVKLG 1zp4A 73 :IIKGIKDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=58082 # 1yxyA.93.40 read from T0547.t04.many.frag # found chain 1yxyA in training set T0547 93 :FVKNLVKLG 1yxyA 41 :MAKAAQEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58083 # 1w96A.93.146 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 93 :FVKNLVKLG 1w96A 159 :LPEKLSQSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58084 # 2bbrA.93.44 read from T0547.t04.many.frag # found chain 2bbrA in training set T0547 93 :FVKNLVKLG 2bbrA 45 :ALCSLSQQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58085 # 1ynfA.93.227 read from T0547.t04.many.frag # found chain 1ynfA in template set Warning: unaligning (T0547)G101 (1ynfA)N225 because G (3-10) conformation "forbidden" or filtered. T0547 93 :FVKNLVKL 1ynfA 217 :ASEAVARL Number of specific fragments extracted= 1 number of extra gaps= 1 total=58086 # 1jftA.93.128 read from T0547.t04.many.frag # found chain 1jftA in template set T0547 93 :FVKNLVKLG 1jftA 130 :LLAMLEEYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58087 # 1yq2A.93.376 read from T0547.t04.many.frag # found chain 1yq2A in template set T0547 93 :FVKNLVKLG 1yq2A 376 :LLDLADEMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58088 # 1xrsA.93.61 read from T0547.t04.many.frag # found chain 1xrsA in template set T0547 93 :FVKNLVKLG 1xrsA 62 :VVDHIKENN Number of specific fragments extracted= 1 number of extra gaps= 0 total=58089 # 1sr9A.93.123 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 93 :FVKNLVKLG 1sr9A 124 :FVREIIEQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58090 # 1gmuA.93.113 read from T0547.t04.many.frag # found chain 1gmuA in training set T0547 93 :FVKNLVKLG 1gmuA 114 :LDDMLRQFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58091 # 2al2A.93.88 read from T0547.t04.many.frag # found chain 2al2A in template set T0547 93 :FVKNLVKLG 2al2A 89 :VDDFLISLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=58092 # 1izcA.93.54 read from T0547.t04.many.frag # found chain 1izcA in training set T0547 93 :FVKNLVKLG 1izcA 55 :VTKVLAATK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58093 # 1t6cA.93.101 read from T0547.t04.many.frag # found chain 1t6cA in training set T0547 93 :FVKNLVKLG 1t6cA 99 :FLERVKREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58094 # 2d28C.93.9 read from T0547.t04.many.frag # found chain 2d28C in template set T0547 93 :FVKNLVKLG 2d28C 10 :IVEALLERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58095 # 1bu8A.93.90 read from T0547.t04.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)G101 (1bu8A)E97 because Y (epsilon') conformation "forbidden" or filtered. T0547 93 :FVKNLVKL 1bu8A 89 :MCKKMFQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=58096 # 1vjrA.93.65 read from T0547.t04.many.frag # found chain 1vjrA in template set T0547 93 :FVKNLVKLG 1vjrA 54 :YVRKLRNMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58097 # 1ox0A.94.218 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 94 :VKNLVKLGK 1ox0A 200 :IAGFQALTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58098 # 1vkyA.94.195 read from T0547.t04.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)K102 (1vkyA)V192 because P (beta_P) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1vkyA 184 :IEKLKKKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=58099 # 2cfeA.94.136 read from T0547.t04.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)G101 (2cfeA)G144 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (2cfeA)S145 because Y (epsilon') conformation "forbidden" or filtered. T0547 94 :VKNLVKL 2cfeA 137 :VKAIEAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=58100 # 1n0qA.94.50 read from T0547.t04.many.frag # found chain 1n0qA in training set T0547 94 :VKNLVKLGK 1n0qA 51 :VKLLLEAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58101 # 1rqlA.94.111 read from T0547.t04.many.frag # found chain 1rqlA in template set T0547 94 :VKNLVKLGK 1rqlA 112 :IASLRERGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58102 # 1z7aA.94.112 read from T0547.t04.many.frag # found chain 1z7aA in training set T0547 94 :VKNLVKLGK 1z7aA 113 :IRAMVADGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=58103 # 7odcA.94.76 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 94 :VKNLVKLGK 7odcA 77 :VSTLAAIGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=58104 # 1ru3A.94.85 read from T0547.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)G101 (1ru3A)I93 because P (beta_P) conformation "forbidden" or filtered. T0547 94 :VKNLVKL 1ru3A 86 :LNRMRAQ T0547 102 :K 1ru3A 94 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=58106 # 1knwA.94.61 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K102 (1knwA)V70 because P (beta_P) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1knwA 62 :LRLMREQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=58107 # 1yxyA.94.41 read from T0547.t04.many.frag # found chain 1yxyA in training set T0547 94 :VKNLVKLGK 1yxyA 42 :AKAAQEAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58108 # 1vkfA.94.48 read from T0547.t04.many.frag # found chain 1vkfA in training set T0547 94 :VKNLVKLGK 1vkfA 37 :LKILKDRGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58109 # 1pu6A.94.7 read from T0547.t04.many.frag # found chain 1pu6A in training set T0547 94 :VKNLVKLGK 1pu6A 8 :LKALKSLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58110 # 1l7dA.94.22 read from T0547.t04.many.frag # found chain 1l7dA in template set T0547 94 :VKNLVKLGK 1l7dA 23 :VKKLVGLGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=58111 # 1q7zA.94.131 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 94 :VKNLVKLGK 1q7zA 132 :VEIMVEEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58112 # 1sr9A.94.124 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 94 :VKNLVKLGK 1sr9A 125 :VREIIEQGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58113 # 1w96A.94.147 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 94 :VKNLVKLGK 1w96A 160 :PEKLSQSKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58114 # 1wcwA.94.101 read from T0547.t04.many.frag # found chain 1wcwA in training set T0547 94 :VKNLVKLGK 1wcwA 102 :ARALKEAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58115 # 2bbrA.94.45 read from T0547.t04.many.frag # found chain 2bbrA in training set T0547 94 :VKNLVKLGK 2bbrA 46 :LCSLSQQRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58116 # 1g8mA.94.21 read from T0547.t04.many.frag # found chain 1g8mA in training set T0547 94 :VKNLVKLGK 1g8mA 22 :ARSLNALGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58117 # 1vjrA.94.66 read from T0547.t04.many.frag # found chain 1vjrA in template set T0547 94 :VKNLVKLGK 1vjrA 55 :VRKLRNMGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58118 # 1jftA.94.129 read from T0547.t04.many.frag # found chain 1jftA in template set T0547 94 :VKNLVKLGK 1jftA 131 :LAMLEEYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=58119 # 1thtA.94.96 read from T0547.t04.many.frag # found chain 1thtA in template set T0547 94 :VKNLVKLGK 1thtA 97 :YHWLQTKGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=58120 # 1t6cA.94.102 read from T0547.t04.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)G101 (1t6cA)V107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (1t6cA)G108 because T (delta_L) conformation "forbidden" or filtered. T0547 94 :VKNLVKL 1t6cA 100 :LERVKRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=58121 # 1j5sA.94.70 read from T0547.t04.many.frag # found chain 1j5sA in template set T0547 94 :VKNLVKLGK 1j5sA 59 :WELMRRCGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58122 # 2d28C.94.10 read from T0547.t04.many.frag # found chain 2d28C in template set T0547 94 :VKNLVKLGK 2d28C 11 :VEALLERRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58123 # 1gmuA.94.114 read from T0547.t04.many.frag # found chain 1gmuA in training set T0547 94 :VKNLVKLGK 1gmuA 115 :DDMLRQFGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58124 # 1zp4A.94.73 read from T0547.t04.many.frag # found chain 1zp4A in template set T0547 94 :VKNLVKLGK 1zp4A 74 :IKGIKDRTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58125 # 1d4oA.94.45 read from T0547.t04.many.frag # found chain 1d4oA in training set T0547 94 :VKNLVKLGK 1d4oA 46 :VKMLSEQGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58126 # 1tqjA.94.22 read from T0547.t04.many.frag # found chain 1tqjA in training set T0547 94 :VKNLVKLGK 1tqjA 23 :IKAVDEAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58127 # 1ve4A.94.19 read from T0547.t04.many.frag # found chain 1ve4A in training set T0547 94 :VKNLVKLGK 1ve4A 20 :YEVLKRAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58128 # 1j5sA.95.71 read from T0547.t04.many.frag # found chain 1j5sA in template set T0547 95 :KNLVKLGKD 1j5sA 60 :ELMRRCGVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=58129 # 1wcwA.95.102 read from T0547.t04.many.frag # found chain 1wcwA in training set T0547 95 :KNLVKLGKD 1wcwA 103 :RALKEAGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=58130 # 1n0qA.95.51 read from T0547.t04.many.frag # found chain 1n0qA in training set T0547 95 :KNLVKLGKD 1n0qA 52 :KLLLEAGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=58131 # 1thtA.95.97 read from T0547.t04.many.frag # found chain 1thtA in template set T0547 95 :KNLVKLGKD 1thtA 98 :HWLQTKGTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=58132 # 1vjrA.95.67 read from T0547.t04.many.frag # found chain 1vjrA in template set T0547 95 :KNLVKLGKD 1vjrA 56 :RKLRNMGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=58133 # 1ox0A.95.219 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 95 :KNLVKLGKD 1ox0A 201 :AGFQALTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58134 # 2cfeA.95.137 read from T0547.t04.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)K102 (2cfeA)S145 because Y (epsilon') conformation "forbidden" or filtered. T0547 95 :KNLVKLG 2cfeA 138 :KAIEAEG T0547 103 :D 2cfeA 146 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=58136 # 1vkyA.95.196 read from T0547.t04.many.frag # found chain 1vkyA in template set T0547 95 :KNLVKLGKD 1vkyA 185 :EKLKKKGVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=58137 # 1ru3A.95.86 read from T0547.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)G101 (1ru3A)I93 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKL 1ru3A 87 :NRMRAQ T0547 102 :KD 1ru3A 94 :KS Number of specific fragments extracted= 2 number of extra gaps= 1 total=58139 # 1tqjA.95.23 read from T0547.t04.many.frag # found chain 1tqjA in training set Warning: unaligning (T0547)K102 (1tqjA)A31 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKLG 1tqjA 24 :KAVDEAG T0547 103 :D 1tqjA 32 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=58141 # 1wfxA.95.146 read from T0547.t04.many.frag # found chain 1wfxA in template set T0547 95 :KNLVKLGKD 1wfxA 147 :ECLRRRGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58142 # 1mla.95.74 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)D103 (1mla)K83 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKLGK 1mla 75 :RVWQQQGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=58143 # 1q7zA.95.132 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 95 :KNLVKLGKD 1q7zA 133 :EIMVEEGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=58144 # 1gxjA.95.19 read from T0547.t04.many.frag # found chain 1gxjA in template set T0547 95 :KNLVKLGKD 1gxjA 504 :RAVFEEKER Number of specific fragments extracted= 1 number of extra gaps= 0 total=58145 # 1vkfA.95.49 read from T0547.t04.many.frag # found chain 1vkfA in training set Warning: unaligning (T0547)K102 (1vkfA)K45 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKLG 1vkfA 38 :KILKDRG T0547 103 :D 1vkfA 46 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=58147 # 1yxyA.95.42 read from T0547.t04.many.frag # found chain 1yxyA in training set T0547 95 :KNLVKLGKD 1yxyA 43 :KAAQEAGAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58148 # 1rqlA.95.112 read from T0547.t04.many.frag # found chain 1rqlA in template set Warning: unaligning (T0547)K102 (1rqlA)I120 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKLG 1rqlA 113 :ASLRERG T0547 103 :D 1rqlA 121 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=58150 # 1s99A.95.28 read from T0547.t04.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)G101 (1s99A)T35 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKL 1s99A 29 :KSALAA T0547 102 :KD 1s99A 36 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=58152 # 1g8mA.95.39 read from T0547.t04.many.frag # found chain 1g8mA in training set T0547 95 :KNLVKLGKD 1g8mA 40 :TALRDAGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=58153 # 2bbrA.95.46 read from T0547.t04.many.frag # found chain 2bbrA in training set T0547 95 :KNLVKLGKD 2bbrA 47 :CSLSQQRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58154 # 1vq2A.95.110 read from T0547.t04.many.frag # found chain 1vq2A in template set T0547 95 :KNLVKLGKD 1vq2A 111 :LFAAENGSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=58155 # 1sr9A.95.125 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 95 :KNLVKLGKD 1sr9A 126 :REIIEQGAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58156 # 1byi.95.23 read from T0547.t04.many.frag # found chain 1byi in training set T0547 95 :KNLVKLGKD 1byi 24 :QAAKAAGYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58157 # 1ei6A.95.31 read from T0547.t04.many.frag # found chain 1ei6A in template set Warning: unaligning (T0547)D103 (1ei6A)A41 because D (zeta) conformation "forbidden" or filtered. T0547 95 :KNLVKLGK 1ei6A 33 :NQAIQAGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=58158 # 1ct5A.95.55 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)K102 (1ct5A)V64 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKLG 1ct5A 57 :QILYDHG T0547 103 :D 1ct5A 65 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=58160 # 1knwA.95.62 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)D103 (1knwA)K71 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKLGK 1knwA 63 :RLMREQGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=58161 # 1zr6A.95.10 read from T0547.t04.many.frag # found chain 1zr6A in training set T0547 95 :KNLVKLGKD 1zr6A 5 :ACLAAADVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58162 # 1d4oA.95.46 read from T0547.t04.many.frag # found chain 1d4oA in training set T0547 95 :KNLVKLGKD 1d4oA 47 :KMLSEQGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58163 # 1g8mA.95.22 read from T0547.t04.many.frag # found chain 1g8mA in training set T0547 95 :KNLVKLGKD 1g8mA 23 :RSLNALGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58164 # 2d28C.95.11 read from T0547.t04.many.frag # found chain 2d28C in template set T0547 95 :KNLVKLGKD 2d28C 12 :EALLERRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58165 # 1j5sA.96.72 read from T0547.t04.many.frag # found chain 1j5sA in template set T0547 96 :NLVKLGKDY 1j5sA 61 :LMRRCGVSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58166 # 1s99A.96.29 read from T0547.t04.many.frag # found chain 1s99A in training set T0547 96 :NLVKLGKDY 1s99A 30 :SALAATDTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=58167 # 1mla.96.75 read from T0547.t04.many.frag # found chain 1mla in training set T0547 96 :NLVKLGKDY 1mla 76 :VWQQQGGKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58168 # 1wcwA.96.103 read from T0547.t04.many.frag # found chain 1wcwA in training set T0547 96 :NLVKLGKDY 1wcwA 104 :ALKEAGLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=58169 # 2f2bA.96.68 read from T0547.t04.many.frag # found chain 2f2bA in training set T0547 96 :NLVKLGKDY 2f2bA 69 :SIYALGNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=58170 # 1n0qA.96.52 read from T0547.t04.many.frag # found chain 1n0qA in training set T0547 96 :NLVKLGKDY 1n0qA 53 :LLLEAGADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58171 # 1thtA.96.98 read from T0547.t04.many.frag # found chain 1thtA in template set T0547 96 :NLVKLGKDY 1thtA 99 :WLQTKGTQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=58172 # 2cfeA.96.138 read from T0547.t04.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)K102 (2cfeA)S145 because Y (epsilon') conformation "forbidden" or filtered. T0547 96 :NLVKLG 2cfeA 139 :AIEAEG T0547 103 :DY 2cfeA 146 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=58174 # 1ru3A.96.87 read from T0547.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)G101 (1ru3A)I93 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKL 1ru3A 88 :RMRAQ T0547 102 :KDY 1ru3A 94 :KSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=58176 # 1gxjA.96.20 read from T0547.t04.many.frag # found chain 1gxjA in template set T0547 96 :NLVKLGKDY 1gxjA 505 :AVFEEKERF Number of specific fragments extracted= 1 number of extra gaps= 0 total=58177 # 1vjrA.96.68 read from T0547.t04.many.frag # found chain 1vjrA in template set T0547 96 :NLVKLGKDY 1vjrA 57 :KLRNMGVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58178 # 1byi.96.24 read from T0547.t04.many.frag # found chain 1byi in training set T0547 96 :NLVKLGKDY 1byi 25 :AAKAAGYRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=58179 # 2al2A.96.91 read from T0547.t04.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)K102 (2al2A)G98 because T (delta_L) conformation "forbidden" or filtered. T0547 96 :NLVKLG 2al2A 92 :FLISLD T0547 103 :DY 2al2A 99 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=58181 # 1ox0A.96.220 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)D103 (1ox0A)L209 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKLGK 1ox0A 202 :GFQALTA T0547 104 :Y 1ox0A 210 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=58183 # 1vq2A.96.111 read from T0547.t04.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)D103 (1vq2A)S119 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKLGK 1vq2A 112 :FAAENGS T0547 104 :Y 1vq2A 120 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=58185 # 1tqjA.96.24 read from T0547.t04.many.frag # found chain 1tqjA in training set T0547 96 :NLVKLGKDY 1tqjA 25 :AVDEAGADW Number of specific fragments extracted= 1 number of extra gaps= 0 total=58186 # 1q7zA.96.133 read from T0547.t04.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)K102 (1q7zA)V140 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKLG 1q7zA 134 :IMVEEG T0547 103 :DY 1q7zA 141 :DG Number of specific fragments extracted= 2 number of extra gaps= 1 total=58188 # 1ytlA.96.72 read from T0547.t04.many.frag # found chain 1ytlA in training set T0547 96 :NLVKLGKDY 1ytlA 73 :RFIDAGLGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58189 # 1w5qA.96.113 read from T0547.t04.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)G101 (1w5qA)F119 because D (zeta) conformation "forbidden" or filtered. T0547 96 :NLVKL 1w5qA 114 :ALRER T0547 102 :KDY 1w5qA 120 :PEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58191 # 2b8nA.96.66 read from T0547.t04.many.frag # found chain 2b8nA in template set T0547 96 :NLVKLGKDY 2b8nA 55 :AAYEVLGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58192 # 1u8xX.96.46 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 96 :NLVKLGKDY 1u8xX 24 :MLLDHLEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=58193 # 1t7lA.96.218 read from T0547.t04.many.frag # found chain 1t7lA in template set T0547 96 :NLVKLGKDY 1t7lA 187 :KLVENGCKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58194 # 1z7xW.96.74 read from T0547.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)G101 (1z7xW)L79 because G (3-10) conformation "forbidden" or filtered. T0547 96 :NLVKL 1z7xW 74 :CVLQG T0547 102 :KDY 1z7xW 80 :QTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=58196 # 2bryA.96.57 read from T0547.t04.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)G101 (2bryA)L55 because G (3-10) conformation "forbidden" or filtered. T0547 96 :NLVKL 2bryA 50 :KIKAQ T0547 102 :KDY 2bryA 56 :NYW Number of specific fragments extracted= 2 number of extra gaps= 1 total=58198 # 1pa1A.96.33 read from T0547.t04.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)G101 (1pa1A)A527 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKL 1pa1A 522 :DIRHE T0547 102 :KDY 1pa1A 528 :SDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=58200 # 1wfxA.96.147 read from T0547.t04.many.frag # found chain 1wfxA in template set T0547 96 :NLVKLGKDY 1wfxA 148 :CLRRRGLKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58201 # 1h4gA.96.164 read from T0547.t04.many.frag # found chain 1h4gA in training set T0547 96 :NLVKLGKDY 1h4gA 165 :AWENLGMNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=58202 # 1vkyA.96.197 read from T0547.t04.many.frag # found chain 1vkyA in template set T0547 96 :NLVKLGKDY 1vkyA 186 :KLKKKGVQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=58203 # 1sr9A.96.126 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)K102 (1sr9A)A133 because G (3-10) conformation "forbidden" or filtered. T0547 96 :NLVKLG 1sr9A 127 :EIIEQG T0547 103 :DY 1sr9A 134 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=58205 # 1wbhA.96.59 read from T0547.t04.many.frag # found chain 1wbhA in training set T0547 96 :NLVKLGKDY 1wbhA 59 :AIAKEVPEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58206 # 1mla.97.76 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)D103 (1mla)K83 because P (beta_P) conformation "forbidden" or filtered. T0547 97 :LVKLGK 1mla 77 :WQQQGG T0547 104 :YN 1mla 84 :AP Number of specific fragments extracted= 2 number of extra gaps= 1 total=58208 # 1j5sA.97.73 read from T0547.t04.many.frag # found chain 1j5sA in template set T0547 97 :LVKLGKDYN 1j5sA 62 :MRRCGVSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58209 # 1wcwA.97.104 read from T0547.t04.many.frag # found chain 1wcwA in training set T0547 97 :LVKLGKDYN 1wcwA 105 :LKEAGLPPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=58210 # 1s99A.97.30 read from T0547.t04.many.frag # found chain 1s99A in training set T0547 97 :LVKLGKDYN 1s99A 31 :ALAATDTSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58211 # 2f2bA.97.69 read from T0547.t04.many.frag # found chain 2f2bA in training set Warning: unaligning (T0547)K102 (2f2bA)N75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y104 (2f2bA)S77 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (2f2bA)G78 because T (delta_L) conformation "forbidden" or filtered. T0547 97 :LVKLG 2f2bA 70 :IYALG T0547 103 :D 2f2bA 76 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=58213 # 1qmgA.97.161 read from T0547.t04.many.frag # found chain 1qmgA in training set T0547 97 :LVKLGKDYN 1qmgA 233 :LQSLGQDFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=58214 # 1ytlA.97.73 read from T0547.t04.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)K102 (1ytlA)L79 because G (3-10) conformation "forbidden" or filtered. T0547 97 :LVKLG 1ytlA 74 :FIDAG T0547 103 :DYN 1ytlA 80 :GEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=58216 # 1byi.97.25 read from T0547.t04.many.frag # found chain 1byi in training set T0547 97 :LVKLGKDYN 1byi 26 :AKAAGYRTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58217 # 1thtA.97.99 read from T0547.t04.many.frag # found chain 1thtA in template set T0547 97 :LVKLGKDYN 1thtA 100 :LQTKGTQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58218 # 1n0qA.97.53 read from T0547.t04.many.frag # found chain 1n0qA in training set T0547 97 :LVKLGKDYN 1n0qA 54 :LLEAGADVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=58219 # 1tjvA.97.97 read from T0547.t04.many.frag # found chain 1tjvA in template set Warning: unaligning (T0547)G101 (1tjvA)I102 because G (3-10) conformation "forbidden" or filtered. T0547 97 :LVKL 1tjvA 98 :LKEL T0547 102 :KDYN 1tjvA 103 :GDIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=58221 # 2b8nA.97.67 read from T0547.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K102 (2b8nA)G61 because S (epsilon) conformation "forbidden" or filtered. T0547 97 :LVKLG 2b8nA 56 :AYEVL T0547 103 :DYN 2b8nA 62 :KKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=58223 # 1vq2A.97.112 read from T0547.t04.many.frag # found chain 1vq2A in template set T0547 97 :LVKLGKDYN 1vq2A 113 :AAENGSSIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58224 # 1vjrA.97.69 read from T0547.t04.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)K102 (1vjrA)V63 because D (zeta) conformation "forbidden" or filtered. T0547 97 :LVKLG 1vjrA 58 :LRNMG T0547 103 :DYN 1vjrA 64 :DVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=58226 # 1jbwA.97.28 read from T0547.t04.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)K102 (1jbwA)N34 because L (left) conformation "forbidden" or filtered. T0547 97 :LVKLG 1jbwA 29 :LHALG T0547 103 :DYN 1jbwA 35 :PQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=58228 # 2cfeA.97.139 read from T0547.t04.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)G101 (2cfeA)G144 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (2cfeA)S145 because Y (epsilon') conformation "forbidden" or filtered. T0547 97 :LVKL 2cfeA 140 :IEAE T0547 103 :DYN 2cfeA 146 :GSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=58230 # 1dg9A.97.29 read from T0547.t04.many.frag # found chain 1dg9A in template set T0547 97 :LVKLGKDYN 1dg9A 30 :VTDQNISDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=58231 # 2al2A.97.92 read from T0547.t04.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)K102 (2al2A)G98 because T (delta_L) conformation "forbidden" or filtered. T0547 97 :LVKLG 2al2A 93 :LISLD T0547 103 :DYN 2al2A 99 :TAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=58233 # 1gxjA.97.21 read from T0547.t04.many.frag # found chain 1gxjA in template set T0547 97 :LVKLGKDYN 1gxjA 506 :VFEEKERFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=58234 # 1z7xW.97.75 read from T0547.t04.many.frag # found chain 1z7xW in template set T0547 97 :LVKLGKDYN 1z7xW 75 :VLQGLQTPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=58235 # 1twfB.97.333 read from T0547.t04.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)G101 (1twfB)G338 because G (3-10) conformation "forbidden" or filtered. T0547 97 :LVKL 1twfB 334 :IGRR T0547 102 :KDYN 1twfB 339 :TALG Number of specific fragments extracted= 2 number of extra gaps= 1 total=58237 # 1h4gA.97.165 read from T0547.t04.many.frag # found chain 1h4gA in training set Warning: unaligning (T0547)N105 (1h4gA)G174 because P (beta_P) conformation "forbidden" or filtered. T0547 97 :LVKLGKDY 1h4gA 166 :WENLGMNM Number of specific fragments extracted= 1 number of extra gaps= 1 total=58238 # 1ox0A.97.221 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)D103 (1ox0A)L209 because P (beta_P) conformation "forbidden" or filtered. T0547 97 :LVKLGK 1ox0A 203 :FQALTA T0547 104 :YN 1ox0A 210 :ST Number of specific fragments extracted= 2 number of extra gaps= 1 total=58240 # 1n0qA.97.20 read from T0547.t04.many.frag # found chain 1n0qA in training set Warning: unaligning (T0547)K102 (1n0qA)A26 because P (beta_P) conformation "forbidden" or filtered. T0547 97 :LVKLG 1n0qA 21 :LLEAG T0547 103 :DYN 1n0qA 27 :DVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=58242 # 1oxwA.97.41 read from T0547.t04.many.frag # found chain 1oxwA in template set Warning: unaligning (T0547)G101 (1oxwA)D59 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (1oxwA)N60 because L (left) conformation "forbidden" or filtered. T0547 97 :LVKL 1oxwA 55 :LQEM T0547 103 :DYN 1oxwA 61 :NAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=58244 # 1g8mA.97.41 read from T0547.t04.many.frag # found chain 1g8mA in training set T0547 97 :LVKLGKDYN 1g8mA 42 :LRDAGLPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58245 # 1vyrA.97.220 read from T0547.t04.many.frag # found chain 1vyrA in training set T0547 97 :LVKLGKDYN 1vyrA 221 :VCNEWSADR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58246 1z6oA expands to /projects/compbio/data/pdb/1z6o.pdb.gz 1z6oA:# 1z6oA.97.93 read from T0547.t04.many.frag # adding 1z6oA to template set # found chain 1z6oA in template set Warning: unaligning (T0547)N105 (1z6oA)N102 because E (beta_S) conformation "forbidden" or filtered. T0547 97 :LVKLGKDY 1z6oA 94 :VTKRGDKM Number of specific fragments extracted= 1 number of extra gaps= 1 total=58247 # 1d4oA.97.48 read from T0547.t04.many.frag # found chain 1d4oA in training set T0547 97 :LVKLGKDYN 1d4oA 49 :LSEQGKKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58248 1ldjA expands to /projects/compbio/data/pdb/1ldj.pdb.gz 1ldjA:# 1ldjA.97.335 read from T0547.t04.many.frag # adding 1ldjA to template set # found chain 1ldjA in template set Warning: unaligning (T0547)K102 (1ldjA)E357 because G (3-10) conformation "forbidden" or filtered. T0547 97 :LVKLG 1ldjA 352 :IEKCG T0547 103 :DYN 1ldjA 358 :AAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58250 # 1mla.98.77 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)N105 (1mla)P85 because P (beta_P) conformation "forbidden" or filtered. T0547 98 :VKLGKDY 1mla 78 :QQQGGKA T0547 106 :Y 1mla 86 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=58252 # 1wcwA.98.105 read from T0547.t04.many.frag # found chain 1wcwA in training set T0547 98 :VKLGKDYNY 1wcwA 106 :KEAGLPPHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58253 # 1j5sA.98.74 read from T0547.t04.many.frag # found chain 1j5sA in template set Warning: unaligning (T0547)D103 (1j5sA)S68 because P (beta_P) conformation "forbidden" or filtered. T0547 98 :VKLGK 1j5sA 63 :RRCGV T0547 104 :YNY 1j5sA 69 :EEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=58255 # 1byi.98.26 read from T0547.t04.many.frag # found chain 1byi in training set Warning: unaligning (T0547)N105 (1byi)A34 because E (beta_S) conformation "forbidden" or filtered. T0547 98 :VKLGKDY 1byi 27 :KAAGYRT T0547 106 :Y 1byi 35 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=58257 # 1ytlA.98.74 read from T0547.t04.many.frag # found chain 1ytlA in training set T0547 98 :VKLGKDYNY 1ytlA 75 :IDAGLGEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58258 # 1qmgA.98.162 read from T0547.t04.many.frag # found chain 1qmgA in training set T0547 98 :VKLGKDYNY 1qmgA 234 :QSLGQDFPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58259 # 1tjvA.98.98 read from T0547.t04.many.frag # found chain 1tjvA in template set T0547 98 :VKLGKDYNY 1tjvA 99 :KELIGDIAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58260 # 2f2bA.98.70 read from T0547.t04.many.frag # found chain 2f2bA in training set Warning: unaligning (T0547)N105 (2f2bA)G78 because T (delta_L) conformation "forbidden" or filtered. T0547 98 :VKLGKDY 2f2bA 71 :YALGNIS T0547 106 :Y 2f2bA 79 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=58262 # 2b8nA.98.68 read from T0547.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)N105 (2b8nA)I64 because P (beta_P) conformation "forbidden" or filtered. T0547 98 :VKLGKDY 2b8nA 57 :YEVLGKK T0547 106 :Y 2b8nA 65 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=58264 # 1g8mA.98.42 read from T0547.t04.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)D103 (1g8mA)P48 because P (beta_P) conformation "forbidden" or filtered. T0547 98 :VKLGK 1g8mA 43 :RDAGL T0547 104 :YNY 1g8mA 49 :VRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=58266 # 1dg9A.98.30 read from T0547.t04.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)N105 (1dg9A)N38 because G (3-10) conformation "forbidden" or filtered. T0547 98 :VKLGKDY 1dg9A 31 :TDQNISD T0547 106 :Y 1dg9A 39 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=58268 # 1vyrA.98.221 read from T0547.t04.many.frag # found chain 1vyrA in training set T0547 98 :VKLGKDYNY 1vyrA 222 :CNEWSADRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58269 # 1thtA.98.100 read from T0547.t04.many.frag # found chain 1thtA in template set T0547 98 :VKLGKDYNY 1thtA 101 :QTKGTQNIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58270 # 1p1xA.98.61 read from T0547.t04.many.frag # found chain 1p1xA in training set T0547 98 :VKLGKDYNY 1p1xA 61 :KEQGTPEIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58271 # 1s99A.98.31 read from T0547.t04.many.frag # found chain 1s99A in training set T0547 98 :VKLGKDYNY 1s99A 32 :LAATDTSKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58272 1ib2A expands to /projects/compbio/data/pdb/1ib2.pdb.gz 1ib2A:# 1ib2A.98.150 read from T0547.t04.many.frag # adding 1ib2A to template set # found chain 1ib2A in template set Warning: unaligning (T0547)G101 (1ib2A)V981 because P (beta_P) conformation "forbidden" or filtered. T0547 98 :VKL 1ib2A 978 :IEC T0547 102 :KDYNY 1ib2A 982 :QPQSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58274 # 1ldjA.98.336 read from T0547.t04.many.frag # found chain 1ldjA in template set T0547 98 :VKLGKDYNY 1ldjA 353 :EKCGEAALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=58275 # 1n0qA.98.21 read from T0547.t04.many.frag # found chain 1n0qA in training set T0547 98 :VKLGKDYNY 1n0qA 22 :LEAGADVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58276 # 1a8y.98.61 read from T0547.t04.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)Y104 (1a8y)K68 because G (3-10) conformation "forbidden" or filtered. T0547 98 :VKLGKD 1a8y 62 :AQVLED T0547 105 :NY 1a8y 69 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=58278 # 1wfxA.98.149 read from T0547.t04.many.frag # found chain 1wfxA in template set T0547 98 :VKLGKDYNY 1wfxA 150 :RRRGLKVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=58279 # 1fcqA.98.172 read from T0547.t04.many.frag # found chain 1fcqA in training set T0547 98 :VKLGKDYNY 1fcqA 173 :KRMRPAANW Number of specific fragments extracted= 1 number of extra gaps= 0 total=58280 # 1r0vA.98.73 read from T0547.t04.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)D103 (1r0vA)K79 because P (beta_P) conformation "forbidden" or filtered. T0547 98 :VKLGK 1r0vA 74 :RDRGN T0547 104 :YNY 1r0vA 80 :VKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=58282 # 1n0qA.98.54 read from T0547.t04.many.frag # found chain 1n0qA in training set T0547 98 :VKLGKDYNY 1n0qA 55 :LEAGADVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58283 # 2bw3A.98.223 read from T0547.t04.many.frag # found chain 2bw3A in template set T0547 98 :VKLGKDYNY 2bw3A 299 :KKANLQHRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58284 # 1gxjA.98.22 read from T0547.t04.many.frag # found chain 1gxjA in template set T0547 98 :VKLGKDYNY 1gxjA 507 :FEEKERFPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58285 # 1z7xW.98.76 read from T0547.t04.many.frag # found chain 1z7xW in template set T0547 98 :VKLGKDYNY 1z7xW 76 :LQGLQTPSC Number of specific fragments extracted= 1 number of extra gaps= 0 total=58286 # 1vjjA.98.259 read from T0547.t04.many.frag # found chain 1vjjA in template set Warning: unaligning (T0547)K102 (1vjjA)L264 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y106 because of BadResidue code BAD_PEPTIDE in next template residue (1vjjA)Y269 T0547 98 :VKLG 1vjjA 260 :KKSG T0547 103 :DYN 1vjjA 265 :SPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=58288 # 1u20A.98.90 read from T0547.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)G101 (1u20A)L94 because G (3-10) conformation "forbidden" or filtered. T0547 98 :VKL 1u20A 91 :EEE T0547 102 :KDYNY 1u20A 95 :GPALA Number of specific fragments extracted= 2 number of extra gaps= 1 total=58290 # 1vjrA.98.70 read from T0547.t04.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)K102 (1vjrA)V63 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1vjrA)P66 because P (beta_P) conformation "forbidden" or filtered. T0547 98 :VKLG 1vjrA 59 :RNMG T0547 103 :DY 1vjrA 64 :DV T0547 106 :Y 1vjrA 67 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=58293 # 1vq2A.98.113 read from T0547.t04.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)Y104 (1vq2A)I120 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y106 (1vq2A)G122 because T (delta_L) conformation "forbidden" or filtered. T0547 98 :VKLGKD 1vq2A 114 :AENGSS T0547 105 :N 1vq2A 121 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=58295 # 1mla.99.78 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. T0547 99 :KLGKDYNY 1mla 79 :QQGGKAPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=58296 # 1j5sA.99.75 read from T0547.t04.many.frag # found chain 1j5sA in template set Warning: unaligning (T0547)D103 (1j5sA)S68 because P (beta_P) conformation "forbidden" or filtered. T0547 99 :KLGK 1j5sA 64 :RCGV T0547 104 :YNYG 1j5sA 69 :EEYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=58298 # 1a8y.99.62 read from T0547.t04.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)G101 (1a8y)L65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1a8y)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 99 :KL 1a8y 63 :QV T0547 102 :KDY 1a8y 66 :EDK T0547 106 :YG 1a8y 70 :VG Number of specific fragments extracted= 3 number of extra gaps= 2 total=58301 # 1byi.99.27 read from T0547.t04.many.frag # found chain 1byi in training set Warning: unaligning (T0547)D103 (1byi)R32 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1byi)Y36 because E (beta_S) conformation "forbidden" or filtered. T0547 99 :KLGK 1byi 28 :AAGY T0547 104 :YNY 1byi 33 :TAG Number of specific fragments extracted= 2 number of extra gaps= 2 total=58303 # 1wcwA.99.106 read from T0547.t04.many.frag # found chain 1wcwA in training set T0547 99 :KLGKDYNYG 1wcwA 107 :EAGLPPHAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58304 # 1tjvA.99.99 read from T0547.t04.many.frag # found chain 1tjvA in template set Warning: unaligning (T0547)K102 (1tjvA)G103 because S (epsilon) conformation "forbidden" or filtered. T0547 99 :KLG 1tjvA 100 :ELI T0547 103 :DYNYG 1tjvA 104 :DIAGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=58306 # 1yt8A.99.276 read from T0547.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)K102 (1yt8A)D280 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1yt8A)L285 because N (gamma') conformation "forbidden" or filtered. T0547 99 :KLG 1yt8A 277 :DEH T0547 103 :DYNY 1yt8A 281 :RTTY Number of specific fragments extracted= 2 number of extra gaps= 2 total=58308 # 1dg9A.99.31 read from T0547.t04.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)G107 (1dg9A)V40 because E (beta_S) conformation "forbidden" or filtered. T0547 99 :KLGKDYNY 1dg9A 32 :DQNISDNW Number of specific fragments extracted= 1 number of extra gaps= 1 total=58309 # 1ytlA.99.75 read from T0547.t04.many.frag # found chain 1ytlA in training set T0547 99 :KLGKDYNYG 1ytlA 76 :DAGLGEKVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=58310 # 1qmgA.99.163 read from T0547.t04.many.frag # found chain 1qmgA in training set T0547 99 :KLGKDYNYG 1qmgA 235 :SLGQDFPKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=58311 # 1ezwA.99.53 read from T0547.t04.many.frag # found chain 1ezwA in training set T0547 99 :KLGKDYNYG 1ezwA 54 :VITSKIKLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58312 # 2b8nA.99.69 read from T0547.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K102 (2b8nA)G61 because S (epsilon) conformation "forbidden" or filtered. T0547 99 :KLG 2b8nA 58 :EVL T0547 103 :DYNYG 2b8nA 62 :KKIRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=58314 # 1ldjA.99.337 read from T0547.t04.many.frag # found chain 1ldjA in template set T0547 99 :KLGKDYNYG 1ldjA 354 :KCGEAALND Number of specific fragments extracted= 1 number of extra gaps= 0 total=58315 # 2b9sB.99.33 read from T0547.t04.many.frag # found chain 2b9sB in template set Warning: unaligning (T0547)D103 (2b9sB)P238 because P (beta_P) conformation "forbidden" or filtered. T0547 99 :KLGK 2b9sB 234 :AQDV T0547 104 :YNYG 2b9sB 239 :INKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=58317 # 1vyrA.99.222 read from T0547.t04.many.frag # found chain 1vyrA in training set T0547 99 :KLGKDYNYG 1vyrA 223 :NEWSADRIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58318 # 1u20A.99.91 read from T0547.t04.many.frag # found chain 1u20A in template set T0547 99 :KLGKDYNYG 1u20A 92 :EELGPALAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=58319 # 1s99A.99.32 read from T0547.t04.many.frag # found chain 1s99A in training set T0547 99 :KLGKDYNYG 1s99A 33 :AATDTSKVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=58320 # 1esc.99.50 read from T0547.t04.many.frag # found chain 1esc in template set Warning: unaligning (T0547)K102 (1esc)I54 because P (beta_P) conformation "forbidden" or filtered. T0547 99 :KLG 1esc 51 :DKG T0547 103 :DYNYG 1esc 55 :TLDVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=58322 # 1p1xA.99.62 read from T0547.t04.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)K102 (1p1xA)T65 because D (zeta) conformation "forbidden" or filtered. T0547 99 :KLG 1p1xA 62 :EQG T0547 103 :DYNYG 1p1xA 66 :PEIRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=58324 # 1z7xW.99.77 read from T0547.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)G101 (1z7xW)L79 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (1z7xW)Q80 because G (3-10) conformation "forbidden" or filtered. T0547 99 :KL 1z7xW 77 :QG T0547 103 :DYNYG 1z7xW 81 :TPSCK Number of specific fragments extracted= 2 number of extra gaps= 1 total=58326 # 2f2bA.99.71 read from T0547.t04.many.frag # found chain 2f2bA in training set Warning: unaligning (T0547)N105 (2f2bA)G78 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y106 (2f2bA)C79 because L (left) conformation "forbidden" or filtered. T0547 99 :KLGKDY 2f2bA 72 :ALGNIS T0547 107 :G 2f2bA 80 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=58328 # 1onwA.99.75 read from T0547.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)G107 (1onwA)T84 because P (beta_P) conformation "forbidden" or filtered. T0547 99 :KLGKDYNY 1onwA 76 :GEAGPTTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=58329 1lycA expands to /projects/compbio/data/pdb/1lyc.pdb.gz 1lycA:# 1lycA.99.65 read from T0547.t04.many.frag # adding 1lycA to template set # found chain 1lycA in template set Warning: unaligning (T0547)N105 (1lycA)G72 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y106 (1lycA)G73 because G (3-10) conformation "forbidden" or filtered. T0547 99 :KLGKDY 1lycA 66 :AAGQFG T0547 107 :G 1lycA 74 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=58331 # 2bw3A.99.224 read from T0547.t04.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)G107 (2bw3A)R308 because P (beta_P) conformation "forbidden" or filtered. T0547 99 :KLGKDYNY 2bw3A 300 :KANLQHRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=58332 # 1yzyA.99.208 read from T0547.t04.many.frag # found chain 1yzyA in template set T0547 99 :KLGKDYNYG 1yzyA 208 :EAVADFKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58333 # 1n0qA.99.22 read from T0547.t04.many.frag # found chain 1n0qA in training set T0547 99 :KLGKDYNYG 1n0qA 23 :EAGADVNAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58334 # 1fcqA.99.173 read from T0547.t04.many.frag # found chain 1fcqA in training set T0547 99 :KLGKDYNYG 1fcqA 174 :RMRPAANWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58335 # 1u8xX.99.49 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 99 :KLGKDYNYG 1u8xX 27 :DHLEEFPIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58336 # 2bmfA.99.65 read from T0547.t04.many.frag # found chain 2bmfA in template set Warning: unaligning (T0547)G101 (2bmfA)L235 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (2bmfA)G237 because T (delta_L) conformation "forbidden" or filtered. T0547 99 :KL 2bmfA 233 :EA T0547 102 :K 2bmfA 236 :R T0547 104 :YNYG 2bmfA 238 :LPIR Number of specific fragments extracted= 3 number of extra gaps= 2 total=58339 # 1ib2A.99.151 read from T0547.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0547)G101 (1ib2A)V981 because P (beta_P) conformation "forbidden" or filtered. T0547 99 :KL 1ib2A 979 :EC T0547 102 :KDYNYG 1ib2A 982 :QPQSLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=58341 # 1yt8A.100.277 read from T0547.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)D103 (1yt8A)R281 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1yt8A)L285 because N (gamma') conformation "forbidden" or filtered. T0547 100 :LGK 1yt8A 278 :EHD T0547 104 :YNY 1yt8A 282 :TTY T0547 108 :L 1yt8A 286 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=58344 # 1mla.100.79 read from T0547.t04.many.frag # found chain 1mla in training set T0547 100 :LGKDYNYGL 1mla 80 :QGGKAPAMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=58345 # 1a8y.100.63 read from T0547.t04.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)G101 (1a8y)L65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1a8y)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1a8y)G71 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :L 1a8y 64 :V T0547 102 :KDY 1a8y 66 :EDK T0547 106 :Y 1a8y 70 :V T0547 108 :L 1a8y 72 :F Number of specific fragments extracted= 4 number of extra gaps= 3 total=58349 # 1onwA.100.76 read from T0547.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)G101 (1onwA)A78 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (1onwA)G79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1onwA)T84 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :L 1onwA 77 :E T0547 103 :DYNY 1onwA 80 :PTTR T0547 108 :L 1onwA 85 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=58352 # 1dg9A.100.32 read from T0547.t04.many.frag # found chain 1dg9A in template set T0547 100 :LGKDYNYGL 1dg9A 33 :QNISDNWVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58353 # 2b8nA.100.70 read from T0547.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K102 (2b8nA)G61 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (2b8nA)K66 because E (beta_S) conformation "forbidden" or filtered. T0547 100 :LG 2b8nA 59 :VL T0547 103 :DYNY 2b8nA 62 :KKIR T0547 108 :L 2b8nA 67 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=58356 # 1ezwA.100.54 read from T0547.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)G107 (1ezwA)G62 because Y (epsilon') conformation "forbidden" or filtered. T0547 100 :LGKDYNY 1ezwA 55 :ITSKIKL T0547 108 :L 1ezwA 63 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=58358 # 1moq.100.75 read from T0547.t04.many.frag # found chain 1moq in training set Warning: unaligning (T0547)D103 (1moq)G319 because L (left) conformation "forbidden" or filtered. T0547 100 :LGK 1moq 316 :SLA T0547 104 :YNYGL 1moq 320 :IPCDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=58360 # 1w5qA.100.117 read from T0547.t04.many.frag # found chain 1w5qA in training set T0547 100 :LGKDYNYGL 1w5qA 118 :RFPELGIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=58361 # 1vyrA.100.223 read from T0547.t04.many.frag # found chain 1vyrA in training set T0547 100 :LGKDYNYGL 1vyrA 224 :EWSADRIGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58362 # 1byi.100.28 read from T0547.t04.many.frag # found chain 1byi in training set T0547 100 :LGKDYNYGL 1byi 29 :AGYRTAGYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58363 # 1yzyA.100.209 read from T0547.t04.many.frag # found chain 1yzyA in template set T0547 100 :LGKDYNYGL 1yzyA 209 :AVADFKLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=58364 # 1vp4A.100.105 read from T0547.t04.many.frag # found chain 1vp4A in template set T0547 100 :LGKDYNYGL 1vp4A 94 :GLDEDNLIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=58365 # 1tjvA.100.100 read from T0547.t04.many.frag # found chain 1tjvA in template set T0547 100 :LGKDYNYGL 1tjvA 101 :LIGDIAGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58366 1vpjA expands to /projects/compbio/data/pdb/1vpj.pdb.gz 1vpjA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 153, because occupancy 0.500 <= existing 0.500 in 1vpjA Skipped atom 155, because occupancy 0.500 <= existing 0.500 in 1vpjA Skipped atom 157, because occupancy 0.500 <= existing 0.500 in 1vpjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 420, because occupancy 0.500 <= existing 0.500 in 1vpjA Skipped atom 422, because occupancy 0.500 <= existing 0.500 in 1vpjA Skipped atom 594, because occupancy 0.500 <= existing 0.500 in 1vpjA Skipped atom 596, because occupancy 0.500 <= existing 0.500 in 1vpjA Skipped atom 618, because occupancy 0.500 <= existing 0.500 in 1vpjA Skipped atom 620, because occupancy 0.500 <= existing 0.500 in 1vpjA Skipped atom 622, because occupancy 0.500 <= existing 0.500 in 1vpjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 992, because occupancy 0.500 <= existing 0.500 in 1vpjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 994, because occupancy 0.500 <= existing 0.500 in 1vpjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 996, because occupancy 0.500 <= existing 0.500 in 1vpjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 998, because occupancy 0.500 <= existing 0.500 in 1vpjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vpjA.100.59 read from T0547.t04.many.frag # adding 1vpjA to template set # found chain 1vpjA in template set T0547 100 :LGKDYNYGL 1vpjA 48 :EGKELPFSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=58367 # 1s99A.100.33 read from T0547.t04.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)G101 (1s99A)T35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1s99A)W41 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :L 1s99A 34 :A T0547 102 :KDYNY 1s99A 36 :DTSKV T0547 108 :L 1s99A 42 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=58370 # 1p1xA.100.63 read from T0547.t04.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)N105 (1p1xA)I68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1p1xA)I70 because E (beta_S) conformation "forbidden" or filtered. T0547 100 :LGKDY 1p1xA 63 :QGTPE T0547 106 :Y 1p1xA 69 :R T0547 108 :L 1p1xA 71 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=58373 # 1ytlA.100.76 read from T0547.t04.many.frag # found chain 1ytlA in training set T0547 100 :LGKDYNYGL 1ytlA 77 :AGLGEKVNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=58374 # 1u20A.100.92 read from T0547.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)G101 (1u20A)L94 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (1u20A)G95 because S (epsilon) conformation "forbidden" or filtered. T0547 100 :L 1u20A 93 :E T0547 103 :DYNYGL 1u20A 96 :PALATV Number of specific fragments extracted= 2 number of extra gaps= 1 total=58376 # 1wcwA.100.107 read from T0547.t04.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)K102 (1wcwA)L110 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1wcwA)V115 because E (beta_S) conformation "forbidden" or filtered. T0547 100 :LG 1wcwA 108 :AG T0547 103 :DYNY 1wcwA 111 :PPHA T0547 108 :L 1wcwA 116 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=58379 # 1pe9A.100.27 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)G107 (1pe9A)I35 because E (beta_S) conformation "forbidden" or filtered. T0547 100 :LGKDYNY 1pe9A 28 :AAATSDN T0547 108 :L 1pe9A 36 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=58381 # 2b9sB.100.34 read from T0547.t04.many.frag # found chain 2b9sB in template set T0547 100 :LGKDYNYGL 2b9sB 235 :QDVPINKIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=58382 # 1r0mA.100.185 read from T0547.t04.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)G107 (1r0mA)T193 because E (beta_S) conformation "forbidden" or filtered. T0547 100 :LGKDYNY 1r0mA 186 :AFPDIRL T0547 108 :L 1r0mA 194 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=58384 # 1o0sA.100.284 read from T0547.t04.many.frag # found chain 1o0sA in template set T0547 100 :LGKDYNYGL 1o0sA 285 :YQDKYTMFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=58385 # 1z7xW.100.78 read from T0547.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)G101 (1z7xW)L79 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (1z7xW)T81 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :L 1z7xW 78 :G T0547 102 :K 1z7xW 80 :Q T0547 104 :YNYGL 1z7xW 82 :PSCKI Number of specific fragments extracted= 3 number of extra gaps= 2 total=58388 # 1qmgA.100.164 read from T0547.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)K102 (1qmgA)Q238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1qmgA)N243 because G (3-10) conformation "forbidden" or filtered. T0547 100 :LG 1qmgA 236 :LG T0547 103 :DYNY 1qmgA 239 :DFPK T0547 108 :L 1qmgA 244 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=58391 # 1j5sA.100.76 read from T0547.t04.many.frag # found chain 1j5sA in template set Warning: unaligning (T0547)Y106 (1j5sA)Y71 because G (3-10) conformation "forbidden" or filtered. T0547 100 :LGKDYN 1j5sA 65 :CGVSEE T0547 107 :GL 1j5sA 72 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=58393 # 1ki9A.100.25 read from T0547.t04.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)N105 (1ki9A)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1ki9A)N33 because D (zeta) conformation "forbidden" or filtered. T0547 100 :LGKDY 1ki9A 26 :KLSEE T0547 106 :Y 1ki9A 32 :I T0547 108 :L 1ki9A 34 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=58396 # 1fyeA.100.55 read from T0547.t04.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)N105 (1fyeA)G61 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1fyeA)N63 because N (gamma') conformation "forbidden" or filtered. T0547 100 :LGKDY 1fyeA 56 :VLAPL T0547 106 :Y 1fyeA 62 :V T0547 108 :L 1fyeA 64 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=58399 # 1i6lA.100.28 read from T0547.t04.many.frag # found chain 1i6lA in training set Warning: unaligning (T0547)G107 (1i6lA)Y36 because E (beta_S) conformation "forbidden" or filtered. T0547 100 :LGKDYNY 1i6lA 29 :LQHEYNC T0547 108 :L 1i6lA 37 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=58401 # 1yt8A.101.278 read from T0547.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)K102 (1yt8A)D280 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1yt8A)L285 because N (gamma') conformation "forbidden" or filtered. T0547 101 :G 1yt8A 279 :H T0547 103 :DYNY 1yt8A 281 :RTTY T0547 108 :LE 1yt8A 286 :LD Number of specific fragments extracted= 3 number of extra gaps= 2 total=58404 # 1mla.101.80 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)D103 (1mla)K83 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 101 :GK 1mla 81 :GG T0547 104 :YNYGL 1mla 84 :APAMM Number of specific fragments extracted= 2 number of extra gaps= 2 total=58406 # 1a8y.101.64 read from T0547.t04.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)G101 (1a8y)L65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1a8y)G73 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :KDYNYGL 1a8y 66 :EDKGVGF Number of specific fragments extracted= 1 number of extra gaps= 2 total=58407 # 1vp4A.101.106 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)G101 (1vp4A)L95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (1vp4A)D96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y104 (1vp4A)D98 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1vp4A)I101 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :D 1vp4A 97 :E T0547 105 :NY 1vp4A 99 :NL T0547 108 :LE 1vp4A 102 :FT Number of specific fragments extracted= 3 number of extra gaps= 3 total=58410 # 1moq.101.76 read from T0547.t04.many.frag # found chain 1moq in training set Warning: unaligning (T0547)D103 (1moq)G319 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1moq)P321 because P (beta_P) conformation "forbidden" or filtered. T0547 101 :GK 1moq 317 :LA T0547 104 :Y 1moq 320 :I T0547 106 :YGLE 1moq 322 :CDVE Number of specific fragments extracted= 3 number of extra gaps= 2 total=58413 # 1w5qA.101.118 read from T0547.t04.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)N105 (1w5qA)G123 because P (beta_P) conformation "forbidden" or filtered. T0547 101 :GKDY 1w5qA 119 :FPEL T0547 106 :YGLE 1w5qA 124 :IITD Number of specific fragments extracted= 2 number of extra gaps= 1 total=58415 # 2b8nA.101.71 read from T0547.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K102 (2b8nA)G61 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (2b8nA)I64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (2b8nA)K66 because E (beta_S) conformation "forbidden" or filtered. T0547 101 :G 2b8nA 60 :L T0547 103 :DY 2b8nA 62 :KK T0547 106 :Y 2b8nA 65 :R T0547 108 :LE 2b8nA 67 :GV Number of specific fragments extracted= 4 number of extra gaps= 3 total=58419 # 1onwA.101.77 read from T0547.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)G101 (1onwA)A78 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (1onwA)G79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1onwA)T84 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DYNY 1onwA 80 :PTTR T0547 108 :LE 1onwA 85 :PE Number of specific fragments extracted= 2 number of extra gaps= 2 total=58421 # 1vyrA.101.224 read from T0547.t04.many.frag # found chain 1vyrA in training set Warning: unaligning (T0547)G107 (1vyrA)G231 because E (beta_S) conformation "forbidden" or filtered. T0547 101 :GKDYNY 1vyrA 225 :WSADRI T0547 108 :LE 1vyrA 232 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=58423 # 1pe9A.101.28 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)G101 (1pe9A)A29 because G (3-10) conformation "forbidden" or filtered. T0547 102 :KDYNYGLE 1pe9A 30 :ATSDNIYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=58424 # 1r0mA.101.186 read from T0547.t04.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)G107 (1r0mA)T193 because E (beta_S) conformation "forbidden" or filtered. T0547 101 :GKDYNY 1r0mA 187 :FPDIRL T0547 108 :LE 1r0mA 194 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=58426 # 1thtA.101.102 read from T0547.t04.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)K102 (1thtA)G104 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1thtA)N107 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1thtA)G109 because E (beta_S) conformation "forbidden" or filtered. T0547 101 :G 1thtA 103 :K T0547 103 :DY 1thtA 105 :TQ T0547 106 :Y 1thtA 108 :I T0547 108 :LE 1thtA 110 :LI Number of specific fragments extracted= 4 number of extra gaps= 3 total=58430 # 1dg9A.101.33 read from T0547.t04.many.frag # found chain 1dg9A in template set T0547 101 :GKDYNYGLE 1dg9A 34 :NISDNWVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=58431 # 1wdaA.101.333 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)Y104 (1wdaA)A330 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1wdaA)K333 because P (beta_P) conformation "forbidden" or filtered. T0547 101 :GKD 1wdaA 327 :AMK T0547 105 :NY 1wdaA 331 :KC T0547 108 :LE 1wdaA 334 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=58434 # 1h2wA.101.542 read from T0547.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)G101 (1h2wA)T543 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :KDYNYGLE 1h2wA 544 :SPKRLTIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=58435 # 1ki9A.101.26 read from T0547.t04.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)N105 (1ki9A)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 101 :GKDY 1ki9A 27 :LSEE T0547 106 :YGLE 1ki9A 32 :INYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=58437 # 1gxjA.101.25 read from T0547.t04.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G107 (1gxjA)L516 because P (beta_P) conformation "forbidden" or filtered. T0547 101 :GKDYNY 1gxjA 510 :KERFPG T0547 108 :LE 1gxjA 517 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=58439 # 1i6lA.101.29 read from T0547.t04.many.frag # found chain 1i6lA in training set Warning: unaligning (T0547)N105 (1i6lA)N34 because P (beta_P) conformation "forbidden" or filtered. T0547 101 :GKDY 1i6lA 30 :QHEY T0547 106 :YGLE 1i6lA 35 :CYFC Number of specific fragments extracted= 2 number of extra gaps= 1 total=58441 # 1jixA.101.29 read from T0547.t04.many.frag # found chain 1jixA in training set T0547 101 :GKDYNYGLE 1jixA 30 :ISEMGLNVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=58442 # 1ezwA.101.55 read from T0547.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)G101 (1ezwA)T56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 because of BadResidue code BAD_PEPTIDE in next template residue (1ezwA)I65 T0547 102 :KDYNYGL 1ezwA 57 :SKIKLGP Number of specific fragments extracted= 1 number of extra gaps= 2 total=58443 # 1yzyA.101.210 read from T0547.t04.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)E109 (1yzyA)G218 because Y (epsilon') conformation "forbidden" or filtered. T0547 101 :GKDYNYGL 1yzyA 210 :VADFKLVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=58444 # 1yzhA.101.38 read from T0547.t04.many.frag # found chain 1yzhA in template set Warning: unaligning (T0547)K102 (1yzhA)N37 because Y (epsilon') conformation "forbidden" or filtered. T0547 101 :G 1yzhA 36 :G T0547 103 :DYNYGLE 1yzhA 38 :DNPIHVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=58446 # 1yukA.101.32 read from T0547.t04.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)K102 (1yukA)D34 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1yukA)D41 because Y (epsilon') conformation "forbidden" or filtered. T0547 101 :G 1yukA 33 :G T0547 103 :DYNYGL 1yukA 35 :PDSIRC Number of specific fragments extracted= 2 number of extra gaps= 2 total=58448 1vqoI expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoI:# 1vqoI.101.127 read from T0547.t04.many.frag # adding 1vqoI to template set # found chain 1vqoI in template set Warning: unaligning (T0547)Y104 (1vqoI)L135 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1vqoI)G136 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 because last residue in template chain is (1vqoI)E140 T0547 101 :GKD 1vqoI 132 :CTS T0547 106 :YGL 1vqoI 137 :VTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=58450 # 1rcqA.101.47 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G101 (1rcqA)L48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1rcqA)G54 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :KDYNY 1rcqA 49 :AAEAD T0547 108 :LE 1rcqA 55 :FA Number of specific fragments extracted= 2 number of extra gaps= 2 total=58452 # 1ze3D.101.96 read from T0547.t04.many.frag # found chain 1ze3D in template set T0547 101 :GKDYNYGLE 1ze3D 97 :VQDATAHLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=58453 # 1xp8A.101.44 read from T0547.t04.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)K102 (1xp8A)A43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1xp8A)K46 because T (delta_L) conformation "forbidden" or filtered. T0547 101 :G 1xp8A 42 :G T0547 103 :DY 1xp8A 44 :ES T0547 106 :YGLE 1xp8A 47 :LDVQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=58456 # 1p1xA.101.64 read from T0547.t04.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)K102 (1p1xA)T65 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1p1xA)T72 because Y (epsilon') conformation "forbidden" or filtered. T0547 101 :G 1p1xA 64 :G T0547 103 :DYNYGL 1p1xA 66 :PEIRIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=58458 # 1ylqA.101.63 read from T0547.t04.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)K102 (1ylqA)F62 because P (beta_P) conformation "forbidden" or filtered. T0547 101 :G 1ylqA 61 :F T0547 103 :DYNYGLE 1ylqA 63 :DSPFEFH Number of specific fragments extracted= 2 number of extra gaps= 1 total=58460 # 2b0tA.101.30 read from T0547.t04.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)G107 (2b0tA)T37 because P (beta_P) conformation "forbidden" or filtered. T0547 101 :GKDYNY 2b0tA 31 :AGIEVE T0547 108 :LE 2b0tA 38 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=58462 # 1yt8A.102.279 read from T0547.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G107 (1yt8A)L285 because N (gamma') conformation "forbidden" or filtered. T0547 102 :KDYNY 1yt8A 280 :DRTTY T0547 108 :LEA 1yt8A 286 :LDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=58464 # 1vp4A.102.107 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)K102 (1vp4A)D96 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNYGLEA 1vp4A 97 :EDNLIFTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=58465 # 1rcqA.102.48 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G107 (1rcqA)G54 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :KDYNY 1rcqA 49 :AAEAD T0547 108 :LEA 1rcqA 55 :FAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=58467 # 1mla.102.81 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)K102 (1mla)G82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNYGL 1mla 83 :KAPAMM T0547 110 :A 1mla 90 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=58469 # 1a8y.102.65 read from T0547.t04.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)N105 (1a8y)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 102 :KDY 1a8y 66 :EDK T0547 106 :YGLEA 1a8y 70 :VGFGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58471 # 1h2wA.102.543 read from T0547.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)G107 (1h2wA)T549 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1h2wA)G552 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :KDYNY 1h2wA 544 :SPKRL T0547 108 :LE 1h2wA 550 :IN Number of specific fragments extracted= 2 number of extra gaps= 2 total=58473 # 1onwA.102.78 read from T0547.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)K102 (1onwA)G79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1onwA)T84 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DYNY 1onwA 80 :PTTR T0547 108 :LEA 1onwA 85 :PEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=58475 # 2b8nA.102.72 read from T0547.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K102 (2b8nA)G61 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (2b8nA)I64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (2b8nA)K66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (2b8nA)V68 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DY 2b8nA 62 :KK T0547 106 :Y 2b8nA 65 :R T0547 108 :L 2b8nA 67 :G T0547 110 :A 2b8nA 69 :V Number of specific fragments extracted= 4 number of extra gaps= 4 total=58479 # 1moq.102.77 read from T0547.t04.many.frag # found chain 1moq in training set Warning: unaligning (T0547)D103 (1moq)G319 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1moq)D323 because E (beta_S) conformation "forbidden" or filtered. T0547 102 :K 1moq 318 :A T0547 104 :YNY 1moq 320 :IPC T0547 108 :LEA 1moq 324 :VEI Number of specific fragments extracted= 3 number of extra gaps= 2 total=58482 # 1pe9A.102.29 read from T0547.t04.many.frag # found chain 1pe9A in training set T0547 102 :KDYNYGLEA 1pe9A 30 :ATSDNIYIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58483 # 1thtA.102.103 read from T0547.t04.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)D103 (1thtA)T105 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1thtA)I111 because E (beta_S) conformation "forbidden" or filtered. T0547 102 :K 1thtA 104 :G T0547 104 :YNYGL 1thtA 106 :QNIGL T0547 110 :A 1thtA 112 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=58486 # 1w5qA.102.119 read from T0547.t04.many.frag # found chain 1w5qA in training set T0547 102 :KDYNYGLEA 1w5qA 120 :PELGIITDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58487 # 1yzhA.102.39 read from T0547.t04.many.frag # found chain 1yzhA in template set T0547 102 :KDYNYGLEA 1yzhA 37 :NDNPIHVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58488 # 1wdaA.102.334 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)N105 (1wdaA)K331 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1wdaA)K333 because P (beta_P) conformation "forbidden" or filtered. T0547 102 :KDY 1wdaA 328 :MKA T0547 106 :Y 1wdaA 332 :C T0547 108 :LEA 1wdaA 334 :LTI Number of specific fragments extracted= 3 number of extra gaps= 2 total=58491 # 1vyrA.102.225 read from T0547.t04.many.frag # found chain 1vyrA in training set Warning: unaligning (T0547)G107 (1vyrA)G231 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1vyrA)V234 because E (beta_S) conformation "forbidden" or filtered. T0547 102 :KDYNY 1vyrA 226 :SADRI T0547 108 :LE 1vyrA 232 :IR Number of specific fragments extracted= 2 number of extra gaps= 2 total=58493 # 1x99A.102.73 read from T0547.t04.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)D103 (1x99A)N75 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1x99A)W79 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L108 (1x99A)C80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1x99A)D81 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :K 1x99A 74 :H T0547 104 :YNY 1x99A 76 :YKR T0547 110 :A 1x99A 82 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=58496 # 1xp8A.102.45 read from T0547.t04.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)N105 (1xp8A)K46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1xp8A)Q50 because P (beta_P) conformation "forbidden" or filtered. T0547 102 :KDY 1xp8A 43 :AES T0547 106 :YGL 1xp8A 47 :LDV T0547 110 :A 1xp8A 51 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=58499 # 1ki9A.102.27 read from T0547.t04.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)N105 (1ki9A)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 102 :KDY 1ki9A 28 :SEE T0547 106 :YGLEA 1ki9A 32 :INYKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=58501 # 1ox0A.102.83 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 102 :KDYNYGLEA 1ox0A 65 :KKDTNRFDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=58502 # 1gxjA.102.26 read from T0547.t04.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)E109 (1gxjA)D518 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :KDYNYGL 1gxjA 511 :ERFPGLV T0547 110 :A 1gxjA 519 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=58504 # 1jixA.102.30 read from T0547.t04.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)N105 (1jixA)G34 because T (delta_L) conformation "forbidden" or filtered. T0547 102 :KDY 1jixA 31 :SEM T0547 106 :YGLEA 1jixA 35 :LNVDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=58506 # 2yhx.102.177 read from T0547.t04.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)D103 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X180 Warning: unaligning (T0547)Y104 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X181 Warning: unaligning (T0547)N105 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X182 Warning: unaligning (T0547)A110 (2yhx)I187 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :K 2yhx 179 :D T0547 106 :YGLE 2yhx 183 :SVAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=58508 # 1dg9A.102.34 read from T0547.t04.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)E109 (1dg9A)D42 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :KDYNYGL 1dg9A 35 :ISDNWVI T0547 110 :A 1dg9A 43 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=58510 # 1mw9X.102.129 read from T0547.t04.many.frag # found chain 1mw9X in training set T0547 102 :KDYNYGLEA 1mw9X 130 :DDARYSRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58511 # 1q79A.102.88 read from T0547.t04.many.frag # found chain 1q79A in template set Warning: unaligning (T0547)A110 (1q79A)I97 because E (beta_S) conformation "forbidden" or filtered. T0547 102 :KDYNYGLE 1q79A 89 :VIENVGGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=58512 # 7odcA.102.80 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N105 (7odcA)G84 because T (delta_L) conformation "forbidden" or filtered. T0547 102 :KDY 7odcA 81 :AAI T0547 106 :YGLEA 7odcA 85 :TGFDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=58514 # 1r0mA.102.187 read from T0547.t04.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)E109 (1r0mA)D195 because E (beta_S) conformation "forbidden" or filtered. T0547 102 :KDYNYGL 1r0mA 188 :PDIRLTV T0547 110 :A 1r0mA 196 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=58516 # 1fi4A.102.117 read from T0547.t04.many.frag # found chain 1fi4A in template set T0547 102 :KDYNYGLEA 1fi4A 98 :TLSQWKLHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58517 # 1ylqA.102.64 read from T0547.t04.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)D103 (1ylqA)D63 because L (left) conformation "forbidden" or filtered. T0547 102 :K 1ylqA 62 :F T0547 104 :YNYGLEA 1ylqA 64 :SPFEFHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=58519 # 1yxyA.102.46 read from T0547.t04.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)Y104 (1yxyA)G49 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1yxyA)A50 because P (beta_P) conformation "forbidden" or filtered. T0547 102 :KD 1yxyA 47 :EA T0547 106 :YGLEA 1yxyA 51 :VGIRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=58521 # 1yt8A.103.280 read from T0547.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G111 (1yt8A)R289 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DYNYGLEA 1yt8A 281 :RTTYLLDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=58522 # 1vp4A.103.108 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)Y104 (1vp4A)D98 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1vp4A)N99 because G (3-10) conformation "forbidden" or filtered. T0547 103 :D 1vp4A 97 :E T0547 106 :YGLEAG 1vp4A 100 :LIFTVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=58524 # 1rcqA.103.49 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N105 (1rcqA)A52 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DY 1rcqA 50 :AE T0547 106 :YGLEAG 1rcqA 53 :DGFAVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=58526 # 1mla.103.82 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNY 1mla 83 :KAPA T0547 108 :L 1mla 88 :M T0547 110 :AG 1mla 90 :GH Number of specific fragments extracted= 3 number of extra gaps= 2 total=58529 # 7odcA.103.81 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 103 :DYNYGLEAG 7odcA 82 :AIGTGFDCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58530 # 1thtA.103.104 read from T0547.t04.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)G107 (1thtA)G109 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DYNY 1thtA 105 :TQNI T0547 108 :LEAG 1thtA 110 :LIAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=58532 # 1a8y.103.66 read from T0547.t04.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)N105 (1a8y)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1a8y)G73 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DY 1a8y 67 :DK T0547 106 :YGL 1a8y 70 :VGF T0547 110 :AG 1a8y 74 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=58535 # 1h2wA.103.544 read from T0547.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)G107 (1h2wA)T549 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1h2wA)G552 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNY 1h2wA 545 :PKRL T0547 108 :LE 1h2wA 550 :IN T0547 111 :G 1h2wA 553 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=58538 # 1ki9A.103.28 read from T0547.t04.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)N105 (1ki9A)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1ki9A)N33 because D (zeta) conformation "forbidden" or filtered. T0547 103 :DY 1ki9A 29 :EE T0547 106 :Y 1ki9A 32 :I T0547 108 :LEAG 1ki9A 34 :YKMV Number of specific fragments extracted= 3 number of extra gaps= 2 total=58541 # 1moq.103.78 read from T0547.t04.many.frag # found chain 1moq in training set Warning: unaligning (T0547)D103 (1moq)G319 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1moq)P321 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :Y 1moq 320 :I T0547 106 :YGLEAG 1moq 322 :CDVEIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=58543 # 1xp8A.103.46 read from T0547.t04.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)G107 (1xp8A)D48 because N (gamma') conformation "forbidden" or filtered. T0547 103 :DYNY 1xp8A 44 :ESKL T0547 108 :LEAG 1xp8A 49 :VQVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=58545 # 1jixA.103.31 read from T0547.t04.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)N105 (1jixA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1jixA)D38 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DY 1jixA 32 :EM T0547 106 :YGL 1jixA 35 :LNV T0547 110 :AG 1jixA 39 :II Number of specific fragments extracted= 3 number of extra gaps= 2 total=58548 # 1ox0A.103.84 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 103 :DYNYGLEAG 1ox0A 66 :KDTNRFDNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=58549 # 1pe9A.103.30 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)Y106 (1pe9A)N34 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1pe9A)I35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1pe9A)T39 because G (3-10) conformation "forbidden" or filtered. T0547 103 :DYN 1pe9A 31 :TSD T0547 108 :LEA 1pe9A 36 :YIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=58551 # 1q79A.103.89 read from T0547.t04.many.frag # found chain 1q79A in template set Warning: unaligning (T0547)E109 (1q79A)K96 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNYGL 1q79A 90 :IENVGG T0547 110 :AG 1q79A 97 :IF Number of specific fragments extracted= 2 number of extra gaps= 1 total=58553 # 1yxyA.103.47 read from T0547.t04.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)Y104 (1yxyA)G49 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1yxyA)A50 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :D 1yxyA 48 :A T0547 106 :YGLEAG 1yxyA 51 :VGIRAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=58555 # 1dg9A.103.35 read from T0547.t04.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)N105 (1dg9A)N38 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1dg9A)V40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1dg9A)D42 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DY 1dg9A 36 :SD T0547 106 :Y 1dg9A 39 :W T0547 108 :L 1dg9A 41 :I T0547 110 :AG 1dg9A 43 :SG Number of specific fragments extracted= 4 number of extra gaps= 3 total=58559 # 1onwA.103.79 read from T0547.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)G111 (1onwA)A88 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DYNYGLEA 1onwA 80 :PTTRTPEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=58560 # 1wdaA.103.335 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G107 (1wdaA)K333 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DYNY 1wdaA 329 :KAKC T0547 108 :LEAG 1wdaA 334 :LTIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=58562 # 1x99A.103.74 read from T0547.t04.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)D103 (1x99A)N75 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y104 (1x99A)Y76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L108 (1x99A)C80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1x99A)D81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1x99A)V82 because E (beta_S) conformation "forbidden" or filtered. T0547 105 :NYG 1x99A 77 :KRW T0547 111 :G 1x99A 83 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=58564 # 1knwA.103.66 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N105 (1knwA)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 103 :DY 1knwA 67 :EQ T0547 106 :YGLEAG 1knwA 70 :VKVDSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=58566 # 2b8nA.103.73 read from T0547.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)N105 (2b8nA)I64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (2b8nA)V70 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DY 2b8nA 62 :KK T0547 106 :YGLEA 2b8nA 65 :RKGVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=58568 # 1gxjA.103.27 read from T0547.t04.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)E109 (1gxjA)D518 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNYGL 1gxjA 512 :RFPGLV T0547 110 :AG 1gxjA 519 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=58570 # 1twdA.103.29 read from T0547.t04.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)L108 (1twdA)G35 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1twdA)P38 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DYNYG 1twdA 30 :APKEG T0547 109 :EA 1twdA 36 :LT Number of specific fragments extracted= 2 number of extra gaps= 2 total=58572 # 1jpzA.103.64 read from T0547.t04.many.frag # found chain 1jpzA in template set Warning: unaligning (T0547)G107 (1jpzA)R66 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1jpzA)K69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1jpzA)N70 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DYNY 1jpzA 62 :CDES T0547 108 :LE 1jpzA 67 :FD Number of specific fragments extracted= 2 number of extra gaps= 2 total=58574 # 1zbsA.103.86 read from T0547.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)G111 (1zbsA)A95 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DYNYGLEA 1zbsA 87 :PHCDRIEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=58575 # 1izoA.103.40 read from T0547.t04.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)Y104 (1izoA)L42 because L (left) conformation "forbidden" or filtered. T0547 103 :D 1izoA 41 :L T0547 105 :NYGLEAG 1izoA 43 :GKNFICM Number of specific fragments extracted= 2 number of extra gaps= 1 total=58577 # 1lucA.103.30 read from T0547.t04.many.frag # found chain 1lucA in training set T0547 103 :DYNYGLEAG 1lucA 31 :SEGCGFDTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58578 # 1rttA.103.33 read from T0547.t04.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)G111 (1rttA)A42 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DYNYGLEA 1rttA 34 :PPGMSIEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=58579 # 1zceA.103.116 read from T0547.t04.many.frag # found chain 1zceA in training set Warning: unaligning (T0547)N105 (1zceA)R119 because G (3-10) conformation "forbidden" or filtered. T0547 103 :DY 1zceA 117 :SM T0547 106 :YGLEAG 1zceA 120 :LSVQPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=58581 # 7odcA.104.82 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y104 (7odcA)I83 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (7odcA)G84 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (7odcA)S91 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGLEAG 7odcA 85 :TGFDCA Number of specific fragments extracted= 1 number of extra gaps= 2 total=58582 # 1rcqA.104.50 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNYGLE 1rcqA 51 :EADGFA T0547 111 :G 1rcqA 58 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=58584 # 1yt8A.104.281 read from T0547.t04.many.frag # found chain 1yt8A in template set T0547 104 :YNYGLEAGS 1yt8A 282 :TTYLLDVRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=58585 # 1vp4A.104.109 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)G107 (1vp4A)I101 because E (beta_S) conformation "forbidden" or filtered. T0547 104 :YNY 1vp4A 98 :DNL T0547 108 :LEAGS 1vp4A 102 :FTVGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=58587 # 1thtA.104.105 read from T0547.t04.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)G107 (1thtA)G109 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1thtA)S114 because S (epsilon) conformation "forbidden" or filtered. T0547 104 :YNY 1thtA 106 :QNI T0547 108 :LEAG 1thtA 110 :LIAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=58589 # 1mla.104.83 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1mla)H91 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :YNYGL 1mla 84 :APAMM T0547 110 :A 1mla 90 :G T0547 112 :S 1mla 92 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=58592 # 1xp8A.104.47 read from T0547.t04.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)N105 (1xp8A)K46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1xp8A)D48 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1xp8A)V51 because E (beta_S) conformation "forbidden" or filtered. T0547 104 :Y 1xp8A 45 :S T0547 106 :Y 1xp8A 47 :L T0547 108 :LE 1xp8A 49 :VQ T0547 111 :GS 1xp8A 52 :VS Number of specific fragments extracted= 4 number of extra gaps= 3 total=58596 # 1jixA.104.32 read from T0547.t04.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)N105 (1jixA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1jixA)N36 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1jixA)I39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1jixA)I40 because E (beta_S) conformation "forbidden" or filtered. T0547 104 :Y 1jixA 33 :M T0547 106 :Y 1jixA 35 :L T0547 108 :LE 1jixA 37 :VD T0547 112 :S 1jixA 41 :S Number of specific fragments extracted= 4 number of extra gaps= 3 total=58600 # 1knwA.104.67 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G107 (1knwA)K71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1knwA)V75 because G (3-10) conformation "forbidden" or filtered. T0547 104 :YNY 1knwA 68 :QGV T0547 108 :LEA 1knwA 72 :VDS T0547 112 :S 1knwA 76 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=58603 # 1h2wA.104.545 read from T0547.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)G107 (1h2wA)T549 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1h2wA)G552 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNY 1h2wA 546 :KRL T0547 108 :LE 1h2wA 550 :IN T0547 111 :GS 1h2wA 553 :GS Number of specific fragments extracted= 3 number of extra gaps= 2 total=58606 # 1moq.104.79 read from T0547.t04.many.frag # found chain 1moq in training set T0547 104 :YNYGLEAGS 1moq 320 :IPCDVEIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=58607 # 1pe9A.104.31 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)E109 (1pe9A)I37 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1pe9A)T39 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1pe9A)N40 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNYGL 1pe9A 32 :SDNIY T0547 110 :A 1pe9A 38 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=58609 # 1twdA.104.30 read from T0547.t04.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)Y106 (1twdA)E33 because G (3-10) conformation "forbidden" or filtered. T0547 104 :YN 1twdA 31 :PK T0547 107 :GLEAGS 1twdA 34 :GGLTPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=58611 # 1izoA.104.41 read from T0547.t04.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)Y104 (1izoA)L42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1izoA)M49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1izoA)T50 because Y (epsilon') conformation "forbidden" or filtered. T0547 105 :NYGLEA 1izoA 43 :GKNFIC Number of specific fragments extracted= 1 number of extra gaps= 2 total=58612 # 1wdaA.104.336 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)Y104 (1wdaA)A330 because G (3-10) conformation "forbidden" or filtered. T0547 105 :NYGLEAGS 1wdaA 331 :KCKLTICP Number of specific fragments extracted= 1 number of extra gaps= 1 total=58613 # 1ox0A.104.85 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 104 :YNYGLEAGS 1ox0A 67 :DTNRFDNYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=58614 # 1jpzA.104.65 read from T0547.t04.many.frag # found chain 1jpzA in template set Warning: unaligning (T0547)A110 (1jpzA)K69 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :YNYGLE 1jpzA 63 :DESRFD T0547 111 :GS 1jpzA 70 :NL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58616 # 1yxyA.104.48 read from T0547.t04.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)Y104 (1yxyA)G49 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1yxyA)N56 because E (beta_S) conformation "forbidden" or filtered. T0547 105 :NYGLEA 1yxyA 50 :AVGIRA T0547 112 :S 1yxyA 57 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=58618 # 1ki9A.104.29 read from T0547.t04.many.frag # found chain 1ki9A in template set T0547 104 :YNYGLEAGS 1ki9A 30 :EGINYKMVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=58619 # 1q79A.104.90 read from T0547.t04.many.frag # found chain 1q79A in template set Warning: unaligning (T0547)L108 (1q79A)G95 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1q79A)K96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1q79A)F98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1q79A)T99 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :YNYG 1q79A 91 :ENVG T0547 110 :A 1q79A 97 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=58621 # 1gxjA.104.28 read from T0547.t04.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)E109 (1gxjA)D518 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNYGL 1gxjA 513 :FPGLV T0547 110 :AGS 1gxjA 519 :VVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=58623 # 1jmuB.104.53 read from T0547.t04.many.frag # found chain 1jmuB in template set Warning: unaligning (T0547)N105 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jmuB)D97 T0547 106 :YGLEAGS 1jmuB 98 :EPLVVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=58624 # 1dg9A.104.36 read from T0547.t04.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)E109 (1dg9A)D42 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNYGL 1dg9A 37 :DNWVI T0547 110 :AGS 1dg9A 43 :SGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=58626 # 1t6cA.104.109 read from T0547.t04.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)Y104 (1t6cA)V107 because G (3-10) conformation "forbidden" or filtered. T0547 105 :NYGLEAGS 1t6cA 108 :GLVVEVIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=58627 # 1rttA.104.34 read from T0547.t04.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)E109 (1rttA)E40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1rttA)A42 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :YNYGL 1rttA 35 :PGMSI T0547 110 :A 1rttA 41 :L T0547 112 :S 1rttA 43 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=58630 # 1a8y.104.67 read from T0547.t04.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)N105 (1a8y)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 104 :Y 1a8y 68 :K T0547 106 :YGLEAGS 1a8y 70 :VGFGLVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=58632 # 1jr2A.104.112 read from T0547.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G107 (1jr2A)S95 because E (beta_S) conformation "forbidden" or filtered. T0547 104 :YNY 1jr2A 92 :NAK T0547 108 :LEAGS 1jr2A 96 :VYVVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=58634 # 1hdhA.104.40 read from T0547.t04.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)A110 (1hdhA)T47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1hdhA)A48 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :YNYGLE 1hdhA 41 :RLTDFH T0547 112 :S 1hdhA 49 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=58636 # 1ybdA.104.107 read from T0547.t04.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)L108 (1ybdA)A114 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNYG 1ybdA 110 :MQQI T0547 109 :EAGS 1ybdA 115 :ETYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=58638 # 1zbsA.104.87 read from T0547.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)N105 (1zbsA)C89 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :Y 1zbsA 88 :H T0547 106 :YGLEAGS 1zbsA 90 :DRIEVAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=58640 # 7odcA.105.83 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N105 (7odcA)G84 because T (delta_L) conformation "forbidden" or filtered. T0547 106 :YGLEAGSK 7odcA 85 :TGFDCASK Number of specific fragments extracted= 1 number of extra gaps= 1 total=58641 # 1knwA.105.68 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N105 (1knwA)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1knwA)V75 because G (3-10) conformation "forbidden" or filtered. T0547 106 :YGLEA 1knwA 70 :VKVDS T0547 112 :SK 1knwA 76 :SL Number of specific fragments extracted= 2 number of extra gaps= 2 total=58643 # 1yt8A.105.282 read from T0547.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)E109 (1yt8A)D287 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1yt8A)R289 because P (beta_P) conformation "forbidden" or filtered. T0547 105 :NYGL 1yt8A 283 :TYLL T0547 110 :A 1yt8A 288 :V T0547 112 :SK 1yt8A 290 :TP Number of specific fragments extracted= 3 number of extra gaps= 2 total=58646 # 1thtA.105.106 read from T0547.t04.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)G111 (1thtA)A113 because E (beta_S) conformation "forbidden" or filtered. T0547 105 :NYGLEA 1thtA 107 :NIGLIA T0547 112 :SK 1thtA 114 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58648 # 1vp4A.105.110 read from T0547.t04.many.frag # found chain 1vp4A in template set T0547 105 :NYGLEAGSK 1vp4A 99 :NLIFTVGSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=58649 # 1rcqA.105.51 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 105 :NYGLE 1rcqA 52 :ADGFA T0547 111 :G 1rcqA 58 :A T0547 113 :K 1rcqA 60 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=58652 # 1jixA.105.33 read from T0547.t04.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)G107 (1jixA)N36 because N (gamma') conformation "forbidden" or filtered. T0547 105 :NY 1jixA 34 :GL T0547 108 :LEAGSK 1jixA 37 :VDIISL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58654 # 1xp8A.105.48 read from T0547.t04.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)N105 (1xp8A)K46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1xp8A)Q50 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :YGL 1xp8A 47 :LDV T0547 110 :AGSK 1xp8A 51 :VVST Number of specific fragments extracted= 2 number of extra gaps= 2 total=58656 # 1mla.105.84 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)N105 (1mla)P85 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGL 1mla 86 :AMM T0547 110 :AGSK 1mla 90 :GHSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=58658 # 1yxyA.105.49 read from T0547.t04.many.frag # found chain 1yxyA in training set T0547 105 :NYGLEAGSK 1yxyA 50 :AVGIRANSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58659 # 1izoA.105.42 read from T0547.t04.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)E109 (1izoA)I47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1izoA)T50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 (1izoA)G51 because S (epsilon) conformation "forbidden" or filtered. T0547 105 :NYGL 1izoA 43 :GKNF T0547 110 :AG 1izoA 48 :CM Number of specific fragments extracted= 2 number of extra gaps= 2 total=58661 # 1moq.105.80 read from T0547.t04.many.frag # found chain 1moq in training set Warning: unaligning (T0547)G107 (1moq)D323 because E (beta_S) conformation "forbidden" or filtered. T0547 105 :NY 1moq 321 :PC T0547 108 :LEAGSK 1moq 324 :VEIASE Number of specific fragments extracted= 2 number of extra gaps= 1 total=58663 # 1hdhA.105.41 read from T0547.t04.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)Y106 (1hdhA)T43 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1hdhA)D44 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1hdhA)S52 T0547 105 :N 1hdhA 42 :L T0547 108 :LEAGS 1hdhA 45 :FHTAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=58665 # 1pe9A.105.32 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)G111 (1pe9A)T39 because G (3-10) conformation "forbidden" or filtered. T0547 105 :NYGLEA 1pe9A 33 :DNIYIV T0547 112 :SK 1pe9A 40 :NI Number of specific fragments extracted= 2 number of extra gaps= 1 total=58667 # 1pzxA.105.117 read from T0547.t04.many.frag # found chain 1pzxA in template set T0547 105 :NYGLEAGSK 1pzxA 116 :IIDSKCASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58668 # 1h2wA.105.546 read from T0547.t04.many.frag # found chain 1h2wA in training set T0547 105 :NYGLEAGSK 1h2wA 547 :RLTINGGSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=58669 # 1wdaA.105.337 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G107 (1wdaA)K333 because P (beta_P) conformation "forbidden" or filtered. T0547 105 :NY 1wdaA 331 :KC T0547 108 :LEAGSK 1wdaA 334 :LTICPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=58671 # 1twdA.105.31 read from T0547.t04.many.frag # found chain 1twdA in training set T0547 105 :NYGLEAGSK 1twdA 32 :KEGGLTPSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58672 # 1y0zA.105.65 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 105 :NYGLEAGSK 1y0zA 66 :FRGFPVNSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58673 # 1ox0A.105.86 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 105 :NYGLEAGSK 1ox0A 68 :TNRFDNYSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58674 # 1jpzA.105.66 read from T0547.t04.many.frag # found chain 1jpzA in template set T0547 105 :NYGLEAGSK 1jpzA 64 :ESRFDKNLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=58675 # 1od6A.105.5 read from T0547.t04.many.frag # found chain 1od6A in training set Warning: unaligning (T0547)L108 (1od6A)F9 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1od6A)D10 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1od6A)P11 because C (cis) conformation "forbidden" or filtered. T0547 105 :NYG 1od6A 6 :PGS T0547 111 :GSK 1od6A 12 :LTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=58677 # 1jmuB.105.54 read from T0547.t04.many.frag # found chain 1jmuB in template set Warning: unaligning (T0547)N105 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jmuB)D97 Warning: unaligning (T0547)G107 (1jmuB)P99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1jmuB)V103 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :Y 1jmuB 98 :E T0547 108 :LEA 1jmuB 100 :LVV T0547 112 :SK 1jmuB 104 :TE Number of specific fragments extracted= 3 number of extra gaps= 2 total=58680 # 1t6cA.105.110 read from T0547.t04.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)G111 (1t6cA)I114 because E (beta_S) conformation "forbidden" or filtered. T0547 105 :NYGLEA 1t6cA 108 :GLVVEV T0547 112 :SK 1t6cA 115 :TP Number of specific fragments extracted= 2 number of extra gaps= 1 total=58682 # 1ki9A.105.30 read from T0547.t04.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)N105 (1ki9A)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 106 :YGLEAGSK 1ki9A 32 :INYKMVNF Number of specific fragments extracted= 1 number of extra gaps= 1 total=58683 # 1q79A.105.91 read from T0547.t04.many.frag # found chain 1q79A in template set Warning: unaligning (T0547)K113 (1q79A)F100 because Y (epsilon') conformation "forbidden" or filtered. T0547 105 :NYGLEAGS 1q79A 92 :NVGGKIFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=58684 # 1e9rA.105.17 read from T0547.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)Y106 (1e9rA)R89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1e9rA)G90 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1e9rA)V94 because E (beta_S) conformation "forbidden" or filtered. T0547 105 :N 1e9rA 88 :L T0547 108 :LEA 1e9rA 91 :TRI T0547 112 :SK 1e9rA 95 :SG Number of specific fragments extracted= 3 number of extra gaps= 2 total=58687 # 1z7xW.105.150 read from T0547.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)N105 (1z7xW)Y150 because L (left) conformation "forbidden" or filtered. T0547 106 :YGLEAGSK 1z7xW 151 :CSLSAASC Number of specific fragments extracted= 1 number of extra gaps= 1 total=58688 # 1uxoA.105.32 read from T0547.t04.many.frag # found chain 1uxoA in training set T0547 105 :NYGLEAGSK 1uxoA 31 :GVQADILNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=58689 # 1jr2A.105.113 read from T0547.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G107 (1jr2A)S95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1jr2A)V98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1jr2A)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 105 :NY 1jr2A 93 :AK T0547 108 :LE 1jr2A 96 :VY T0547 111 :G 1jr2A 99 :V T0547 113 :K 1jr2A 101 :N Number of specific fragments extracted= 4 number of extra gaps= 3 total=58693 # 7odcA.106.84 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G107 (7odcA)G86 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :Y 7odcA 85 :T T0547 108 :LEAGSKA 7odcA 87 :FDCASKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=58695 # 1knwA.106.69 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G107 (1knwA)K71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1knwA)S76 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :Y 1knwA 70 :V T0547 108 :LEAG 1knwA 72 :VDSV T0547 113 :KA 1knwA 77 :LG Number of specific fragments extracted= 3 number of extra gaps= 2 total=58698 # 1thtA.106.107 read from T0547.t04.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)G111 (1thtA)A113 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1thtA)S114 because S (epsilon) conformation "forbidden" or filtered. T0547 106 :YGLEA 1thtA 108 :IGLIA T0547 113 :KA 1thtA 115 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=58700 # 1yt8A.106.283 read from T0547.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G107 (1yt8A)L285 because N (gamma') conformation "forbidden" or filtered. T0547 106 :Y 1yt8A 284 :Y T0547 108 :LEAGSKA 1yt8A 286 :LDVRTPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=58702 # 1yxyA.106.50 read from T0547.t04.many.frag # found chain 1yxyA in training set T0547 106 :YGLEAGSKA 1yxyA 51 :VGIRANSVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58703 # 1vp4A.106.111 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)G111 (1vp4A)G105 because S (epsilon) conformation "forbidden" or filtered. T0547 106 :YGLEA 1vp4A 100 :LIFTV T0547 112 :SKA 1vp4A 106 :SQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=58705 # 1rcqA.106.52 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGLE 1rcqA 53 :DGFA T0547 111 :GSKA 1rcqA 58 :ACIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=58707 # 1mla.106.85 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1mla)H91 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :Y 1mla 86 :A T0547 108 :L 1mla 88 :M T0547 110 :A 1mla 90 :G T0547 112 :SKA 1mla 92 :SLG Number of specific fragments extracted= 4 number of extra gaps= 3 total=58711 # 1jixA.106.34 read from T0547.t04.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)A114 (1jixA)K43 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGLEAGSK 1jixA 35 :LNVDIISL Number of specific fragments extracted= 1 number of extra gaps= 1 total=58712 # 1hdhA.106.42 read from T0547.t04.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)A110 (1hdhA)T47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1hdhA)S52 T0547 106 :YGLE 1hdhA 43 :TDFH T0547 111 :GS 1hdhA 48 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=58714 # 1xp8A.106.49 read from T0547.t04.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)A110 (1xp8A)V51 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :YGLE 1xp8A 47 :LDVQ T0547 111 :GSKA 1xp8A 52 :VSTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=58716 # 1y0zA.106.66 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 106 :YGLEAGSKA 1y0zA 67 :RGFPVNSAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=58717 # 1h2wA.106.547 read from T0547.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)G107 (1h2wA)T549 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1h2wA)G552 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :Y 1h2wA 548 :L T0547 108 :LE 1h2wA 550 :IN T0547 111 :GSKA 1h2wA 553 :GSNG Number of specific fragments extracted= 3 number of extra gaps= 2 total=58720 # 1od6A.106.6 read from T0547.t04.many.frag # found chain 1od6A in training set Warning: unaligning (T0547)Y106 (1od6A)G7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L108 (1od6A)F9 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1od6A)D10 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1od6A)P11 because C (cis) conformation "forbidden" or filtered. T0547 107 :G 1od6A 8 :S T0547 111 :GSKA 1od6A 12 :LTNG Number of specific fragments extracted= 2 number of extra gaps= 2 total=58722 # 1t6cA.106.111 read from T0547.t04.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)G107 (1t6cA)V110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1t6cA)I114 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :Y 1t6cA 109 :L T0547 108 :LEA 1t6cA 111 :VEV T0547 112 :SKA 1t6cA 115 :TPE Number of specific fragments extracted= 3 number of extra gaps= 2 total=58725 # 1izoA.106.43 read from T0547.t04.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)A110 (1izoA)C48 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1izoA)T50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 (1izoA)G51 because S (epsilon) conformation "forbidden" or filtered. T0547 106 :YGLE 1izoA 44 :KNFI T0547 111 :G 1izoA 49 :M T0547 114 :A 1izoA 52 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=58728 # 1wdaA.106.338 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)E109 (1wdaA)T335 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1wdaA)C337 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :YGL 1wdaA 332 :CKL T0547 110 :A 1wdaA 336 :I T0547 112 :SKA 1wdaA 338 :PEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=58731 # 1pzxA.106.118 read from T0547.t04.many.frag # found chain 1pzxA in template set Warning: unaligning (T0547)A110 (1pzxA)C121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1pzxA)A122 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :YGLE 1pzxA 117 :IDSK T0547 112 :SKA 1pzxA 123 :SLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=58733 # 1pe9A.106.33 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)G107 (1pe9A)I35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1pe9A)N40 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :Y 1pe9A 34 :N T0547 108 :LEAG 1pe9A 36 :YIVT T0547 113 :KA 1pe9A 41 :IS Number of specific fragments extracted= 3 number of extra gaps= 2 total=58736 # 1z7xW.106.151 read from T0547.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)E109 (1z7xW)S154 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGL 1z7xW 151 :CSL T0547 110 :AGSKA 1z7xW 155 :AASCE Number of specific fragments extracted= 2 number of extra gaps= 1 total=58738 # 1jpzA.106.67 read from T0547.t04.many.frag # found chain 1jpzA in template set Warning: unaligning (T0547)G111 (1jpzA)N70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 (1jpzA)S72 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :YGLEA 1jpzA 65 :SRFDK T0547 112 :S 1jpzA 71 :L T0547 114 :A 1jpzA 73 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=58741 # 1e9rA.106.18 read from T0547.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)G107 (1e9rA)G90 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1e9rA)R92 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1e9rA)V94 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :Y 1e9rA 89 :R T0547 108 :L 1e9rA 91 :T T0547 110 :A 1e9rA 93 :I T0547 112 :SKA 1e9rA 95 :SGG Number of specific fragments extracted= 4 number of extra gaps= 3 total=58745 # 1zceA.106.119 read from T0547.t04.many.frag # found chain 1zceA in training set Warning: unaligning (T0547)G111 (1zceA)V125 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :YGLEA 1zceA 120 :LSVQP T0547 112 :SKA 1zceA 126 :TEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=58747 # 1uxoA.106.33 read from T0547.t04.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)G107 (1uxoA)Q33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1uxoA)L37 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :Y 1uxoA 32 :V T0547 108 :LEA 1uxoA 34 :ADI T0547 112 :SKA 1uxoA 38 :NMP Number of specific fragments extracted= 3 number of extra gaps= 2 total=58750 # 1jr2A.106.114 read from T0547.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G107 (1jr2A)S95 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :Y 1jr2A 94 :K T0547 108 :LEAGSKA 1jr2A 96 :VYVVGNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=58752 # 1jmuB.106.55 read from T0547.t04.many.frag # found chain 1jmuB in template set T0547 106 :YGLEAGSKA 1jmuB 98 :EPLVVVTEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=58753 # 1moq.106.81 read from T0547.t04.many.frag # found chain 1moq in training set T0547 106 :YGLEAGSKA 1moq 322 :CDVEIASEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=58754 # 1o4yA.106.241 read from T0547.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0547)G111 (1o4yA)A263 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :YGLEA 1o4yA 258 :DWRPA T0547 112 :SKA 1o4yA 264 :TQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=58756 # 1twdA.106.32 read from T0547.t04.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)L108 (1twdA)G35 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1twdA)P38 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :YG 1twdA 33 :EG T0547 109 :EA 1twdA 36 :LT T0547 112 :SKA 1twdA 39 :SLG Number of specific fragments extracted= 3 number of extra gaps= 2 total=58759 # 1r26A.106.19 read from T0547.t04.many.frag # found chain 1r26A in training set Warning: unaligning (T0547)Y106 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1r26A)S1 Warning: unaligning (T0547)G107 because of BadResidue code BAD_PEPTIDE in next template residue (1r26A)V3 Warning: unaligning (T0547)L108 because of BadResidue code BAD_PEPTIDE at template residue (1r26A)V3 T0547 109 :EAGSKA 1r26A 4 :DVYSVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=58760 # 7odcA.107.85 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G111 (7odcA)A90 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (7odcA)S91 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GLEA 7odcA 86 :GFDC T0547 113 :KAE 7odcA 92 :KTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=58762 # 1knwA.107.70 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G107 (1knwA)K71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1knwA)V75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1knwA)S76 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEA 1knwA 72 :VDS T0547 113 :KAE 1knwA 77 :LGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=58764 # 1yxyA.107.51 read from T0547.t04.many.frag # found chain 1yxyA in training set T0547 107 :GLEAGSKAE 1yxyA 52 :GIRANSVRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=58765 # 1mla.107.86 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1mla)H91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1mla)S92 because S (epsilon) conformation "forbidden" or filtered. T0547 107 :GL 1mla 87 :MM T0547 110 :A 1mla 90 :G T0547 113 :KAE 1mla 93 :LGE Number of specific fragments extracted= 3 number of extra gaps= 2 total=58768 # 1vp4A.107.112 read from T0547.t04.many.frag # found chain 1vp4A in template set T0547 107 :GLEAGSKAE 1vp4A 101 :IFTVGSQQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58769 # 1rcqA.107.53 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GLE 1rcqA 54 :GFA T0547 111 :GSKAE 1rcqA 58 :ACIEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=58771 # 1thtA.107.108 read from T0547.t04.many.frag # found chain 1thtA in template set T0547 107 :GLEAGSKAE 1thtA 109 :GLIAASLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58772 # 1yt8A.107.284 read from T0547.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G107 (1yt8A)L285 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1yt8A)R289 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :LEA 1yt8A 286 :LDV T0547 112 :SKAE 1yt8A 290 :TPEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=58774 # 1hdhA.107.43 read from T0547.t04.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)G107 (1hdhA)D44 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1hdhA)T47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1hdhA)S52 Warning: unaligning (T0547)E115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1hdhA)S52 T0547 108 :LE 1hdhA 45 :FH T0547 111 :GS 1hdhA 48 :AS Number of specific fragments extracted= 2 number of extra gaps= 2 total=58776 # 1y0zA.107.67 read from T0547.t04.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)G111 (1y0zA)N72 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1y0zA)S73 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GLEA 1y0zA 68 :GFPV T0547 113 :KAE 1y0zA 74 :ADD Number of specific fragments extracted= 2 number of extra gaps= 1 total=58778 # 1xp8A.107.50 read from T0547.t04.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)G107 (1xp8A)D48 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1xp8A)V52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A114 (1xp8A)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 108 :LEA 1xp8A 49 :VQV T0547 112 :SK 1xp8A 53 :ST T0547 115 :E 1xp8A 56 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=58781 # 1z7xW.107.152 read from T0547.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)E109 (1z7xW)S154 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GL 1z7xW 152 :SL T0547 110 :AGSKAE 1z7xW 155 :AASCEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=58783 # 1h2wA.107.548 read from T0547.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)A110 (1h2wA)G552 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1h2wA)S554 because S (epsilon) conformation "forbidden" or filtered. T0547 107 :GLE 1h2wA 549 :TIN T0547 111 :G 1h2wA 553 :G T0547 113 :KAE 1h2wA 555 :NGG Number of specific fragments extracted= 3 number of extra gaps= 2 total=58786 # 1od6A.107.7 read from T0547.t04.many.frag # found chain 1od6A in training set Warning: unaligning (T0547)L108 (1od6A)F9 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1od6A)P11 because C (cis) conformation "forbidden" or filtered. T0547 107 :G 1od6A 8 :S T0547 109 :E 1od6A 10 :D T0547 111 :GSKAE 1od6A 12 :LTNGH Number of specific fragments extracted= 3 number of extra gaps= 2 total=58789 # 1t6cA.107.112 read from T0547.t04.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)G107 (1t6cA)V110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1t6cA)E112 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :L 1t6cA 111 :V T0547 110 :AGSKAE 1t6cA 113 :VITPEQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=58791 # 1e9rA.107.19 read from T0547.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)E109 (1e9rA)R92 because P (beta_P) conformation "forbidden" or filtered. T0547 107 :GL 1e9rA 90 :GT T0547 110 :AGSKAE 1e9rA 93 :IVSGGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=58793 # 1pe9A.107.34 read from T0547.t04.many.frag # found chain 1pe9A in training set T0547 107 :GLEAGSKAE 1pe9A 35 :IYIVTNISE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58794 # 1g8mA.107.29 read from T0547.t04.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)G111 (1g8mA)A34 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GLEA 1g8mA 30 :LGLI T0547 112 :SKAE 1g8mA 35 :SGGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=58796 # 1wdaA.107.339 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G107 (1wdaA)K333 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1wdaA)T335 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :L 1wdaA 334 :L T0547 110 :AGSKAE 1wdaA 336 :ICPEEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=58798 # 1t0fA.107.57 read from T0547.t04.many.frag # found chain 1t0fA in template set T0547 107 :GLEAGSKAE 1t0fA 55 :VHHLLSDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58799 # 1jpzA.107.68 read from T0547.t04.many.frag # found chain 1jpzA in template set Warning: unaligning (T0547)G107 (1jpzA)R66 because G (3-10) conformation "forbidden" or filtered. T0547 108 :LEAGSKAE 1jpzA 67 :FDKNLSQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=58800 # 1n2zA.107.3 read from T0547.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)G111 (1n2zA)L29 because G (3-10) conformation "forbidden" or filtered. T0547 107 :GLEA 1n2zA 25 :RVIT T0547 112 :SKAE 1n2zA 30 :SPAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=58802 # 1jr2A.107.115 read from T0547.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)S112 (1jr2A)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 107 :GLEAG 1jr2A 95 :SVYVV T0547 113 :KAE 1jr2A 101 :NAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=58804 # 1o4yA.107.242 read from T0547.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0547)G107 (1o4yA)W259 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1o4yA)P261 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1o4yA)A263 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :L 1o4yA 260 :R T0547 110 :A 1o4yA 262 :A T0547 112 :SKAE 1o4yA 264 :TQEE Number of specific fragments extracted= 3 number of extra gaps= 3 total=58807 # 1pzxA.107.119 read from T0547.t04.many.frag # found chain 1pzxA in template set Warning: unaligning (T0547)E109 (1pzxA)K120 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1pzxA)A122 because E (beta_S) conformation "forbidden" or filtered. T0547 107 :GL 1pzxA 118 :DS T0547 110 :A 1pzxA 121 :C T0547 112 :SKAE 1pzxA 123 :SLGQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=58810 # 1jixA.107.35 read from T0547.t04.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)G111 (1jixA)I40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1jixA)S41 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GLEA 1jixA 36 :NVDI T0547 113 :KAE 1jixA 42 :LKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=58812 # 1z70X.107.149 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)L108 (1z70X)K1223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1z70X)R1224 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1z70X)P1226 because P (beta_P) conformation "forbidden" or filtered. T0547 107 :G 1z70X 1222 :G T0547 110 :A 1z70X 1225 :L T0547 112 :SKAE 1z70X 1227 :TEAE Number of specific fragments extracted= 3 number of extra gaps= 2 total=58815 # 1z70X.107.132 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)A110 (1z70X)H1208 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1z70X)V1209 because E (beta_S) conformation "forbidden" or filtered. T0547 107 :GLE 1z70X 1205 :PVL T0547 112 :SKAE 1z70X 1210 :SWND Number of specific fragments extracted= 2 number of extra gaps= 1 total=58817 # 1izoA.107.44 read from T0547.t04.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)G107 (1izoA)N45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1izoA)T50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 (1izoA)G51 because S (epsilon) conformation "forbidden" or filtered. T0547 108 :LEAG 1izoA 46 :FICM T0547 114 :AE 1izoA 52 :AE Number of specific fragments extracted= 2 number of extra gaps= 2 total=58819 # 1u7nA.107.96 read from T0547.t04.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)G107 (1u7nA)I94 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :LEAGSKAE 1u7nA 95 :FSAGNTGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=58820 # 7odcA.108.86 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 108 :LEAGSKAEL 7odcA 87 :FDCASKTEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58821 # 1yxyA.108.52 read from T0547.t04.many.frag # found chain 1yxyA in training set T0547 108 :LEAGSKAEL 1yxyA 53 :IRANSVRDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58822 # 1knwA.108.71 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G111 (1knwA)V75 because G (3-10) conformation "forbidden" or filtered. T0547 108 :LEA 1knwA 72 :VDS T0547 112 :SKAEL 1knwA 76 :SLGEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=58824 # 1rcqA.108.54 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 108 :LEAGSKAEL 1rcqA 55 :FAVACIEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=58825 # 1mla.108.87 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G111 (1mla)H91 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :LEA 1mla 88 :MAG T0547 112 :SKAEL 1mla 92 :SLGEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=58827 # 1vp4A.108.113 read from T0547.t04.many.frag # found chain 1vp4A in template set T0547 108 :LEAGSKAEL 1vp4A 102 :FTVGSQQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58828 # 1y0zA.108.68 read from T0547.t04.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)S112 (1y0zA)S73 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEAG 1y0zA 69 :FPVN T0547 113 :KAEL 1y0zA 74 :ADDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=58830 # 1thtA.108.109 read from T0547.t04.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)S112 (1thtA)S114 because S (epsilon) conformation "forbidden" or filtered. T0547 108 :LEAG 1thtA 110 :LIAA T0547 113 :KAEL 1thtA 115 :LSAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=58832 # 1g8mA.108.30 read from T0547.t04.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)E109 (1g8mA)L32 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1g8mA)A34 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :L 1g8mA 31 :G T0547 110 :A 1g8mA 33 :I T0547 112 :SKAEL 1g8mA 35 :SGGTA Number of specific fragments extracted= 3 number of extra gaps= 2 total=58835 # 1hdhA.108.44 read from T0547.t04.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)A110 (1hdhA)T47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1hdhA)A48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1hdhA)S52 Warning: unaligning (T0547)E115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1hdhA)S52 T0547 108 :LE 1hdhA 45 :FH T0547 112 :S 1hdhA 49 :S T0547 116 :L 1hdhA 53 :P Number of specific fragments extracted= 3 number of extra gaps= 1 total=58838 # 1yt8A.108.285 read from T0547.t04.many.frag # found chain 1yt8A in template set T0547 108 :LEAGSKAEL 1yt8A 286 :LDVRTPEEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=58839 # 1z7xW.108.153 read from T0547.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)E109 (1z7xW)S154 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :L 1z7xW 153 :L T0547 110 :AGSKAEL 1z7xW 155 :AASCEPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58841 # 1od6A.108.8 read from T0547.t04.many.frag # found chain 1od6A in training set Warning: unaligning (T0547)L108 (1od6A)F9 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1od6A)D10 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1od6A)P11 because C (cis) conformation "forbidden" or filtered. T0547 111 :GSKAEL 1od6A 12 :LTNGHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=58842 # 1xp8A.108.51 read from T0547.t04.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)G111 (1xp8A)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :LEA 1xp8A 49 :VQV T0547 112 :SKAEL 1xp8A 53 :STGSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58844 # 1t0fA.108.58 read from T0547.t04.many.frag # found chain 1t0fA in template set T0547 108 :LEAGSKAEL 1t0fA 56 :HHLLSDLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58845 # 1e9rA.108.20 read from T0547.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)G111 (1e9rA)V94 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :LEA 1e9rA 91 :TRI T0547 112 :SKAEL 1e9rA 95 :SGGKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58847 # 1h2wA.108.549 read from T0547.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)S112 (1h2wA)S554 because S (epsilon) conformation "forbidden" or filtered. T0547 108 :LEAG 1h2wA 550 :INGG T0547 113 :KAEL 1h2wA 555 :NGGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58849 # 1pe9A.108.35 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)S112 (1pe9A)N40 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEAG 1pe9A 36 :YIVT T0547 113 :KAEL 1pe9A 41 :ISEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=58851 # 1n2zA.108.4 read from T0547.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)G111 (1n2zA)L29 because G (3-10) conformation "forbidden" or filtered. T0547 108 :LEA 1n2zA 26 :VIT T0547 112 :SKAEL 1n2zA 30 :SPANT Number of specific fragments extracted= 2 number of extra gaps= 1 total=58853 # 1jpzA.108.69 read from T0547.t04.many.frag # found chain 1jpzA in template set Warning: unaligning (T0547)K113 (1jpzA)S72 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :LEAGS 1jpzA 67 :FDKNL T0547 114 :AEL 1jpzA 73 :QAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58855 # 1z70X.108.150 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)L108 (1z70X)K1223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1z70X)R1224 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1z70X)T1227 because P (beta_P) conformation "forbidden" or filtered. T0547 110 :AG 1z70X 1225 :LP T0547 113 :KAEL 1z70X 1228 :EAEW Number of specific fragments extracted= 2 number of extra gaps= 2 total=58857 # 1o4yA.108.243 read from T0547.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0547)A110 (1o4yA)A262 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :LE 1o4yA 260 :RP T0547 111 :GSKAEL 1o4yA 263 :ATQEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58859 # 1u7nA.108.97 read from T0547.t04.many.frag # found chain 1u7nA in template set T0547 108 :LEAGSKAEL 1u7nA 95 :FSAGNTGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58860 # 1jr2A.108.116 read from T0547.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)A110 (1jr2A)V98 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :LE 1jr2A 96 :VY T0547 111 :GSKAEL 1jr2A 99 :VGNATA Number of specific fragments extracted= 2 number of extra gaps= 1 total=58862 1w6kA expands to /projects/compbio/data/pdb/1w6k.pdb.gz 1w6kA:# 1w6kA.108.118 read from T0547.t04.many.frag # adding 1w6kA to template set # found chain 1w6kA in template set T0547 108 :LEAGSKAEL 1w6kA 119 :LPAGYREEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58863 # 1pzxA.108.120 read from T0547.t04.many.frag # found chain 1pzxA in template set Warning: unaligning (T0547)E109 (1pzxA)K120 because L (left) conformation "forbidden" or filtered. T0547 108 :L 1pzxA 119 :S T0547 110 :AGSKAEL 1pzxA 121 :CASLGQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=58865 # 1wdaA.108.340 read from T0547.t04.many.frag # found chain 1wdaA in template set T0547 108 :LEAGSKAEL 1wdaA 334 :LTICPEEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=58866 # 1zceA.108.121 read from T0547.t04.many.frag # found chain 1zceA in training set Warning: unaligning (T0547)A110 (1zceA)P124 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :LE 1zceA 122 :VQ T0547 111 :GSKAEL 1zceA 125 :VTEEEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=58868 # 1kgdA.108.53 read from T0547.t04.many.frag # found chain 1kgdA in training set T0547 108 :LEAGSKAEL 1kgdA 783 :YYFVSHDQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=58869 # 1izoA.108.45 read from T0547.t04.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)S112 (1izoA)T50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 (1izoA)G51 because S (epsilon) conformation "forbidden" or filtered. T0547 108 :LEAG 1izoA 46 :FICM T0547 114 :AEL 1izoA 52 :AEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=58871 # 7odcA.109.87 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A110 (7odcA)C89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (7odcA)A90 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (7odcA)S91 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :E 7odcA 88 :D T0547 113 :KAELL 7odcA 92 :KTEIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=58873 # 1yxyA.109.53 read from T0547.t04.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)S112 (1yxyA)S57 because S (epsilon) conformation "forbidden" or filtered. T0547 109 :EAG 1yxyA 54 :RAN T0547 113 :KAELL 1yxyA 58 :VRDIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=58875 # 1knwA.109.72 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)S112 (1knwA)S76 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :EAG 1knwA 73 :DSV T0547 113 :KAELL 1knwA 77 :LGEIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=58877 # 1rcqA.109.55 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)E109 (1rcqA)A56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. T0547 111 :GSKAELL 1rcqA 58 :ACIEEGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=58878 # 1y0zA.109.69 read from T0547.t04.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)S112 (1y0zA)S73 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :EAG 1y0zA 70 :PVN T0547 113 :KAELL 1y0zA 74 :ADDFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=58880 # 1mla.109.88 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1mla)H91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1mla)S92 because S (epsilon) conformation "forbidden" or filtered. T0547 110 :A 1mla 90 :G T0547 113 :KAELL 1mla 93 :LGEYS Number of specific fragments extracted= 2 number of extra gaps= 2 total=58882 # 1t0fA.109.59 read from T0547.t04.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)E109 (1t0fA)H57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1t0fA)L59 because G (3-10) conformation "forbidden" or filtered. T0547 110 :A 1t0fA 58 :L T0547 112 :SKAELL 1t0fA 60 :SDLELA Number of specific fragments extracted= 2 number of extra gaps= 2 total=58884 # 1z7xW.109.154 read from T0547.t04.many.frag # found chain 1z7xW in template set T0547 109 :EAGSKAELL 1z7xW 154 :SAASCEPLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58885 # 1pe9A.109.36 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)G111 (1pe9A)T39 because G (3-10) conformation "forbidden" or filtered. T0547 109 :EA 1pe9A 37 :IV T0547 112 :SKAELL 1pe9A 40 :NISEFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=58887 # 1od6A.109.9 read from T0547.t04.many.frag # found chain 1od6A in training set Warning: unaligning (T0547)E109 (1od6A)D10 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1od6A)P11 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1od6A)L12 because P (beta_P) conformation "forbidden" or filtered. T0547 112 :SKAELL 1od6A 13 :TNGHLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=58888 # 1g8mA.109.31 read from T0547.t04.many.frag # found chain 1g8mA in training set T0547 109 :EAGSKAELL 1g8mA 32 :LIASGGTAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=58889 # 1hdhA.109.45 read from T0547.t04.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)A110 (1hdhA)T47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1hdhA)S52 Warning: unaligning (T0547)E115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1hdhA)S52 T0547 109 :E 1hdhA 46 :H T0547 111 :GS 1hdhA 48 :AS T0547 116 :LL 1hdhA 53 :PT Number of specific fragments extracted= 3 number of extra gaps= 1 total=58892 # 1xp8A.109.52 read from T0547.t04.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)E109 (1xp8A)Q50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1xp8A)V51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1xp8A)V52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A114 (1xp8A)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 112 :SK 1xp8A 53 :ST T0547 115 :ELL 1xp8A 56 :SLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=58894 # 1vp4A.109.114 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)G111 (1vp4A)G105 because S (epsilon) conformation "forbidden" or filtered. T0547 109 :EA 1vp4A 103 :TV T0547 112 :SKAELL 1vp4A 106 :SQQALD Number of specific fragments extracted= 2 number of extra gaps= 1 total=58896 # 1thtA.109.110 read from T0547.t04.many.frag # found chain 1thtA in template set T0547 109 :EAGSKAELL 1thtA 111 :IAASLSARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58897 # 1z70X.109.151 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)E109 (1z70X)R1224 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :AGSKAELL 1z70X 1225 :LPTEAEWE Number of specific fragments extracted= 1 number of extra gaps= 1 total=58898 # 1yt8A.109.286 read from T0547.t04.many.frag # found chain 1yt8A in template set T0547 109 :EAGSKAELL 1yt8A 287 :DVRTPEEYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58899 # 1e9rA.109.21 read from T0547.t04.many.frag # found chain 1e9rA in template set T0547 109 :EAGSKAELL 1e9rA 92 :RIVSGGKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58900 # 1h2wA.109.550 read from T0547.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)A110 (1h2wA)G552 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :E 1h2wA 551 :N T0547 111 :GSKAELL 1h2wA 553 :GSNGGLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58902 # 1u7nA.109.98 read from T0547.t04.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)S112 (1u7nA)N99 because P (beta_P) conformation "forbidden" or filtered. T0547 109 :EAG 1u7nA 96 :SAG T0547 113 :KAELL 1u7nA 100 :TGALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58904 # 1w6kA.109.119 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 109 :EAGSKAELL 1w6kA 120 :PAGYREEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58905 # 1n2zA.109.5 read from T0547.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)A110 (1n2zA)T28 because E (beta_S) conformation "forbidden" or filtered. T0547 109 :E 1n2zA 27 :I T0547 111 :GSKAELL 1n2zA 29 :LSPANTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=58907 # 1o4yA.109.244 read from T0547.t04.many.frag # found chain 1o4yA in training set T0547 109 :EAGSKAELL 1o4yA 261 :PAATQEELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58908 # 1m9xC.109.44 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)A110 (1m9xC)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 109 :E 1m9xC 45 :E T0547 111 :GSKAELL 1m9xC 47 :ATPQDLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=58910 # 1jpzA.109.70 read from T0547.t04.many.frag # found chain 1jpzA in template set T0547 109 :EAGSKAELL 1jpzA 68 :DKNLSQALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=58911 # 2acvA.109.141 read from T0547.t04.many.frag # found chain 2acvA in template set Warning: unaligning (T0547)G111 (2acvA)S144 because P (beta_P) conformation "forbidden" or filtered. T0547 109 :EA 2acvA 142 :LT T0547 112 :SKAELL 2acvA 145 :NVGFLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=58913 # 1pzxA.109.121 read from T0547.t04.many.frag # found chain 1pzxA in template set Warning: unaligning (T0547)E109 (1pzxA)K120 because L (left) conformation "forbidden" or filtered. T0547 110 :AGSKAELL 1pzxA 121 :CASLGQGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=58914 # 1wbhA.109.73 read from T0547.t04.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)E109 (1wbhA)T73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1wbhA)V74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1wbhA)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 111 :G 1wbhA 75 :L T0547 113 :KAELL 1wbhA 77 :PQQLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=58916 # 1uuhA.109.39 read from T0547.t04.many.frag # found chain 1uuhA in template set T0547 109 :EAGSKAELL 1uuhA 59 :TLPTMAQME Number of specific fragments extracted= 1 number of extra gaps= 0 total=58917 # 1gkpA.109.129 read from T0547.t04.many.frag # found chain 1gkpA in training set T0547 109 :EAGSKAELL 1gkpA 131 :DEKTEGQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58918 # 1knwA.110.73 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 110 :AGSKAELLL 1knwA 74 :SVSLGEIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=58919 # 7odcA.110.88 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A110 (7odcA)C89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (7odcA)S91 because Y (epsilon') conformation "forbidden" or filtered. T0547 111 :G 7odcA 90 :A T0547 113 :KAELLL 7odcA 92 :KTEIQL Number of specific fragments extracted= 2 number of extra gaps= 2 total=58921 # 1yxyA.110.54 read from T0547.t04.many.frag # found chain 1yxyA in training set T0547 110 :AGSKAELLL 1yxyA 55 :ANSVRDIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=58922 # 1rcqA.110.56 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. T0547 111 :GSKAELLL 1rcqA 58 :ACIEEGLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=58923 # 1mla.110.89 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G111 (1mla)H91 because P (beta_P) conformation "forbidden" or filtered. T0547 110 :A 1mla 90 :G T0547 112 :SKAELLL 1mla 92 :SLGEYSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=58925 # 1y0zA.110.70 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 110 :AGSKAELLL 1y0zA 71 :VNSADDFND Number of specific fragments extracted= 1 number of extra gaps= 0 total=58926 # 1pe9A.110.37 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)G111 (1pe9A)T39 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1pe9A)N40 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :A 1pe9A 38 :V T0547 113 :KAELLL 1pe9A 41 :ISEFTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=58928 # 1z7xW.110.155 read from T0547.t04.many.frag # found chain 1z7xW in template set T0547 110 :AGSKAELLL 1z7xW 155 :AASCEPLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=58929 # 1g8mA.110.32 read from T0547.t04.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)G111 (1g8mA)A34 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :A 1g8mA 33 :I T0547 112 :SKAELLL 1g8mA 35 :SGGTATA Number of specific fragments extracted= 2 number of extra gaps= 1 total=58931 # 1t0fA.110.60 read from T0547.t04.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)G111 (1t0fA)L59 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1t0fA)S60 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :A 1t0fA 58 :L T0547 113 :KAELLL 1t0fA 61 :DLELAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=58933 # 1od6A.110.10 read from T0547.t04.many.frag # found chain 1od6A in training set Warning: unaligning (T0547)A110 (1od6A)P11 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1od6A)L12 because P (beta_P) conformation "forbidden" or filtered. T0547 112 :SKAELLL 1od6A 13 :TNGHLDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=58934 # 1pii.110.116 read from T0547.t04.many.frag # found chain 1pii in template set T0547 110 :AGSKAELLL 1pii 117 :IIDPYQIYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58935 # 1u7nA.110.99 read from T0547.t04.many.frag # found chain 1u7nA in template set T0547 110 :AGSKAELLL 1u7nA 97 :AGNTGALLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=58936 # 1z70X.110.152 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)G111 (1z70X)P1226 because P (beta_P) conformation "forbidden" or filtered. T0547 110 :A 1z70X 1225 :L T0547 112 :SKAELLL 1z70X 1227 :TEAEWEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=58938 # 1hdhA.110.46 read from T0547.t04.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)A110 (1hdhA)T47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1hdhA)S52 Warning: unaligning (T0547)E115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1hdhA)S52 T0547 111 :GS 1hdhA 48 :AS T0547 116 :LLL 1hdhA 53 :PTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=58940 # 1vp4A.110.115 read from T0547.t04.many.frag # found chain 1vp4A in template set T0547 110 :AGSKAELLL 1vp4A 104 :VGSQQALDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58941 # 1xp8A.110.53 read from T0547.t04.many.frag # found chain 1xp8A in template set T0547 110 :AGSKAELLL 1xp8A 51 :VVSTGSLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58942 # 1n2zA.110.6 read from T0547.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)G111 (1n2zA)L29 because G (3-10) conformation "forbidden" or filtered. T0547 110 :A 1n2zA 28 :T T0547 112 :SKAELLL 1n2zA 30 :SPANTEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58944 # 1h2wA.110.551 read from T0547.t04.many.frag # found chain 1h2wA in training set T0547 110 :AGSKAELLL 1h2wA 552 :GGSNGGLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58945 # 1w6kA.110.120 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 110 :AGSKAELLL 1w6kA 121 :AGYREEIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=58946 # 2etvA.110.30 read from T0547.t04.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)S112 (2etvA)G45 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A114 (2etvA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 110 :AG 2etvA 43 :AV T0547 113 :K 2etvA 46 :P T0547 115 :ELLL 2etvA 48 :ALRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=58949 # 1m9xC.110.45 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)A110 (1m9xC)G46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1m9xC)A47 because P (beta_P) conformation "forbidden" or filtered. T0547 112 :SKAELLL 1m9xC 48 :TPQDLNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=58950 # 1thtA.110.111 read from T0547.t04.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)S112 (1thtA)S114 because S (epsilon) conformation "forbidden" or filtered. T0547 110 :AG 1thtA 112 :AA T0547 113 :KAELLL 1thtA 115 :LSARVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=58952 # 1jpzA.110.71 read from T0547.t04.many.frag # found chain 1jpzA in template set Warning: unaligning (T0547)G111 (1jpzA)N70 because E (beta_S) conformation "forbidden" or filtered. T0547 110 :A 1jpzA 69 :K T0547 112 :SKAELLL 1jpzA 71 :LSQALKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=58954 # 1wbhA.110.74 read from T0547.t04.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)G111 (1wbhA)L75 because G (3-10) conformation "forbidden" or filtered. T0547 110 :A 1wbhA 74 :V T0547 112 :SKAELLL 1wbhA 76 :NPQQLAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=58956 # 2acvA.110.142 read from T0547.t04.many.frag # found chain 2acvA in template set Warning: unaligning (T0547)G111 (2acvA)S144 because P (beta_P) conformation "forbidden" or filtered. T0547 110 :A 2acvA 143 :T T0547 112 :SKAELLL 2acvA 145 :NVGFLSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58958 # 1wuaA.110.75 read from T0547.t04.many.frag # found chain 1wuaA in template set Warning: unaligning (T0547)G111 (1wuaA)T77 because G (3-10) conformation "forbidden" or filtered. T0547 110 :A 1wuaA 76 :I T0547 112 :SKAELLL 1wuaA 78 :NWDDMEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=58960 # 1e9rA.110.22 read from T0547.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)G111 (1e9rA)V94 because E (beta_S) conformation "forbidden" or filtered. T0547 110 :A 1e9rA 93 :I T0547 112 :SKAELLL 1e9rA 95 :SGGKLKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=58962 # 1ct5A.110.67 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G111 (1ct5A)N70 because G (3-10) conformation "forbidden" or filtered. T0547 110 :A 1ct5A 69 :E T0547 112 :SKAELLL 1ct5A 71 :YVQELIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=58964 # 1jr2A.110.118 read from T0547.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)A110 (1jr2A)V98 because E (beta_S) conformation "forbidden" or filtered. T0547 111 :GSKAELLL 1jr2A 99 :VGNATASL Number of specific fragments extracted= 1 number of extra gaps= 1 total=58965 # 1knwA.111.74 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G111 (1knwA)V75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1knwA)S76 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLA 1knwA 77 :LGEIERA Number of specific fragments extracted= 1 number of extra gaps= 1 total=58966 # 7odcA.111.89 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G111 (7odcA)A90 because G (3-10) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 7odcA 91 :SKTEIQLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=58967 # 1yxyA.111.55 read from T0547.t04.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)S112 (1yxyA)S57 because S (epsilon) conformation "forbidden" or filtered. T0547 111 :G 1yxyA 56 :N T0547 113 :KAELLLA 1yxyA 58 :VRDIKEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=58969 # 1rcqA.111.57 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 111 :GSKAELLLA 1rcqA 58 :ACIEEGLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58970 # 1z7xW.111.156 read from T0547.t04.many.frag # found chain 1z7xW in template set T0547 111 :GSKAELLLA 1z7xW 156 :ASCEPLASV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58971 # 1pe9A.111.38 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)S112 (1pe9A)N40 because Y (epsilon') conformation "forbidden" or filtered. T0547 111 :G 1pe9A 39 :T T0547 113 :KAELLLA 1pe9A 41 :ISEFTSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=58973 # 1pii.111.117 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G111 (1pii)I118 because G (3-10) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1pii 119 :DPYQIYLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=58974 # 1y0zA.111.71 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 111 :GSKAELLLA 1y0zA 72 :NSADDFNDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=58975 # 1mla.111.90 read from T0547.t04.many.frag # found chain 1mla in training set T0547 111 :GSKAELLLA 1mla 91 :HSLGEYSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58976 # 1g8mA.111.33 read from T0547.t04.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)G111 (1g8mA)A34 because Y (epsilon') conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1g8mA 35 :SGGTATAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=58977 # 1w6kA.111.121 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 111 :GSKAELLLA 1w6kA 122 :GYREEIVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=58978 # 1od6A.111.11 read from T0547.t04.many.frag # found chain 1od6A in training set T0547 111 :GSKAELLLA 1od6A 12 :LTNGHLDVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58979 # 1vp4A.111.116 read from T0547.t04.many.frag # found chain 1vp4A in template set T0547 111 :GSKAELLLA 1vp4A 105 :GSQQALDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58980 # 1wbhA.111.75 read from T0547.t04.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)G111 (1wbhA)L75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1wbhA)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLA 1wbhA 77 :PQQLAEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=58981 # 1z70X.111.153 read from T0547.t04.many.frag # found chain 1z70X in training set T0547 111 :GSKAELLLA 1z70X 1226 :PTEAEWEYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=58982 # 2etvA.111.31 read from T0547.t04.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)S112 (2etvA)G45 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A114 (2etvA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 111 :G 2etvA 44 :V T0547 113 :K 2etvA 46 :P T0547 115 :ELLLA 2etvA 48 :ALRLI Number of specific fragments extracted= 3 number of extra gaps= 2 total=58985 # 1u7nA.111.100 read from T0547.t04.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)G111 (1u7nA)G98 because P (beta_P) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1u7nA 99 :NTGALLAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=58986 # 1xp8A.111.54 read from T0547.t04.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)A114 (1xp8A)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 111 :GSK 1xp8A 52 :VST T0547 115 :ELLLA 1xp8A 56 :SLSLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=58988 # 1n2zA.111.7 read from T0547.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)G111 (1n2zA)L29 because G (3-10) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1n2zA 30 :SPANTELA Number of specific fragments extracted= 1 number of extra gaps= 1 total=58989 # 1t0fA.111.61 read from T0547.t04.many.frag # found chain 1t0fA in template set T0547 111 :GSKAELLLA 1t0fA 59 :LSDLELAVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=58990 # 1gkpA.111.131 read from T0547.t04.many.frag # found chain 1gkpA in training set T0547 111 :GSKAELLLA 1gkpA 133 :KTEGQLREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=58991 # 1bouA.111.86 read from T0547.t04.many.frag # found chain 1bouA in template set T0547 111 :GSKAELLLA 1bouA 87 :GNVYFLSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=58992 # 1wuaA.111.76 read from T0547.t04.many.frag # found chain 1wuaA in template set Warning: unaligning (T0547)G111 (1wuaA)T77 because G (3-10) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1wuaA 78 :NWDDMEKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=58993 # 1m9xC.111.46 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)G111 (1m9xC)A47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1m9xC)T48 because P (beta_P) conformation "forbidden" or filtered. T0547 113 :KAELLLA 1m9xC 49 :PQDLNTM Number of specific fragments extracted= 1 number of extra gaps= 1 total=58994 # 1ig0A.111.66 read from T0547.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0547)K113 (1ig0A)D69 because S (epsilon) conformation "forbidden" or filtered. T0547 111 :GS 1ig0A 67 :CA T0547 114 :AELLLA 1ig0A 70 :GAANRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=58996 # 1hdhA.111.47 read from T0547.t04.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)G111 (1hdhA)A48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1hdhA)S52 Warning: unaligning (T0547)E115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1hdhA)S52 T0547 112 :S 1hdhA 49 :S T0547 116 :LLLA 1hdhA 53 :PTRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=58998 # 1h2wA.111.552 read from T0547.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)S112 (1h2wA)S554 because S (epsilon) conformation "forbidden" or filtered. T0547 111 :G 1h2wA 553 :G T0547 113 :KAELLLA 1h2wA 555 :NGGLLVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=59000 1vqoW expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoW:# 1vqoW.111.56 read from T0547.t04.many.frag # adding 1vqoW to template set # found chain 1vqoW in template set Warning: unaligning (T0547)G111 (1vqoW)P57 because P (beta_P) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1vqoW 58 :SQETLETV Number of specific fragments extracted= 1 number of extra gaps= 1 total=59001 # 1jpzA.111.72 read from T0547.t04.many.frag # found chain 1jpzA in template set Warning: unaligning (T0547)G111 (1jpzA)N70 because E (beta_S) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1jpzA 71 :LSQALKFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=59002 # 1ae9A.111.3 read from T0547.t04.many.frag # found chain 1ae9A in template set T0547 111 :GSKAELLLA 1ae9A 180 :LTADEYLKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=59003 # 1knwA.112.75 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 112 :SKAELLLAM 1knwA 76 :SLGEIERAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59004 # 7odcA.112.90 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)S112 (7odcA)S91 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLAM 7odcA 92 :KTEIQLVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=59005 # 1rcqA.112.58 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1rcqA 60 :IEEGLELR Number of specific fragments extracted= 1 number of extra gaps= 1 total=59006 # 1yxyA.112.56 read from T0547.t04.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)S112 (1yxyA)S57 because S (epsilon) conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1yxyA 58 :VRDIKEIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=59007 # 1pe9A.112.39 read from T0547.t04.many.frag # found chain 1pe9A in training set T0547 112 :SKAELLLAM 1pe9A 40 :NISEFTSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59008 # 1z7xW.112.157 read from T0547.t04.many.frag # found chain 1z7xW in template set T0547 112 :SKAELLLAM 1z7xW 157 :SCEPLASVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59009 # 1pii.112.118 read from T0547.t04.many.frag # found chain 1pii in template set T0547 112 :SKAELLLAM 1pii 119 :DPYQIYLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=59010 # 1g8mA.112.34 read from T0547.t04.many.frag # found chain 1g8mA in training set T0547 112 :SKAELLLAM 1g8mA 35 :SGGTATALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=59011 # 1gkpA.112.132 read from T0547.t04.many.frag # found chain 1gkpA in training set T0547 112 :SKAELLLAM 1gkpA 134 :TEGQLREIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=59012 # 1w6kA.112.122 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 112 :SKAELLLAM 1w6kA 123 :YREEIVRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59013 # 1mla.112.91 read from T0547.t04.many.frag # found chain 1mla in training set T0547 112 :SKAELLLAM 1mla 92 :SLGEYSALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=59014 # 1y0zA.112.72 read from T0547.t04.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)S112 (1y0zA)S73 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1y0zA 74 :ADDFNDVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=59015 # 1z70X.112.154 read from T0547.t04.many.frag # found chain 1z70X in training set T0547 112 :SKAELLLAM 1z70X 1227 :TEAEWEYSC Number of specific fragments extracted= 1 number of extra gaps= 0 total=59016 # 1wbhA.112.76 read from T0547.t04.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)S112 (1wbhA)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1wbhA 77 :PQQLAEVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=59017 # 1u7nA.112.101 read from T0547.t04.many.frag # found chain 1u7nA in template set T0547 112 :SKAELLLAM 1u7nA 99 :NTGALLAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59018 # 1n2zA.112.8 read from T0547.t04.many.frag # found chain 1n2zA in template set T0547 112 :SKAELLLAM 1n2zA 30 :SPANTELAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=59019 # 1od6A.112.12 read from T0547.t04.many.frag # found chain 1od6A in training set T0547 112 :SKAELLLAM 1od6A 13 :TNGHLDVIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=59020 # 1t0fA.112.62 read from T0547.t04.many.frag # found chain 1t0fA in template set T0547 112 :SKAELLLAM 1t0fA 60 :SDLELAVFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59021 # 1vp4A.112.117 read from T0547.t04.many.frag # found chain 1vp4A in template set T0547 112 :SKAELLLAM 1vp4A 106 :SQQALDLIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59022 # 1bouA.112.87 read from T0547.t04.many.frag # found chain 1bouA in template set T0547 112 :SKAELLLAM 1bouA 88 :NVYFLSKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=59023 # 2etvA.112.32 read from T0547.t04.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)S112 (2etvA)G45 because S (epsilon) conformation "forbidden" or filtered. T0547 113 :KAELLLAM 2etvA 46 :PGALRLIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=59024 # 1mw5A.112.71 read from T0547.t04.many.frag # found chain 1mw5A in template set T0547 112 :SKAELLLAM 1mw5A 69 :SWLNLDDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59025 # 1xp8A.112.55 read from T0547.t04.many.frag # found chain 1xp8A in template set T0547 112 :SKAELLLAM 1xp8A 53 :STGSLSLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59026 # 1m9xC.112.47 read from T0547.t04.many.frag # found chain 1m9xC in training set T0547 112 :SKAELLLAM 1m9xC 48 :TPQDLNTML Number of specific fragments extracted= 1 number of extra gaps= 0 total=59027 # 1uuhA.112.42 read from T0547.t04.many.frag # found chain 1uuhA in template set T0547 112 :SKAELLLAM 1uuhA 62 :TMAQMEKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59028 # 1twdA.112.9 read from T0547.t04.many.frag # found chain 1twdA in training set T0547 112 :SKAELLLAM 1twdA 10 :SMECALTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=59029 # 1ae9A.112.4 read from T0547.t04.many.frag # found chain 1ae9A in template set T0547 112 :SKAELLLAM 1ae9A 181 :TADEYLKIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=59030 # 1jr2A.112.120 read from T0547.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)S112 (1jr2A)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1jr2A 101 :NATASLVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=59031 # 1o2dA.112.82 read from T0547.t04.many.frag # found chain 1o2dA in training set T0547 112 :SKAELLLAM 1o2dA 71 :SFDNVMKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=59032 # 1wuaA.112.77 read from T0547.t04.many.frag # found chain 1wuaA in template set T0547 112 :SKAELLLAM 1wuaA 78 :NWDDMEKIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=59033 # 1knwA.113.76 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 113 :KAELLLAMA 1knwA 77 :LGEIERALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59034 # 7odcA.113.91 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 113 :KAELLLAMA 7odcA 92 :KTEIQLVQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59035 # 1rcqA.113.59 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 113 :KAELLLAMA 1rcqA 60 :IEEGLELRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=59036 # 1pe9A.113.40 read from T0547.t04.many.frag # found chain 1pe9A in training set T0547 113 :KAELLLAMA 1pe9A 41 :ISEFTSALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=59037 # 1z7xW.113.158 read from T0547.t04.many.frag # found chain 1z7xW in template set T0547 113 :KAELLLAMA 1z7xW 158 :CEPLASVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=59038 # 1pii.113.119 read from T0547.t04.many.frag # found chain 1pii in template set T0547 113 :KAELLLAMA 1pii 120 :PYQIYLARY Number of specific fragments extracted= 1 number of extra gaps= 0 total=59039 # 1yxyA.113.57 read from T0547.t04.many.frag # found chain 1yxyA in training set T0547 113 :KAELLLAMA 1yxyA 58 :VRDIKEIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59040 # 1gkpA.113.133 read from T0547.t04.many.frag # found chain 1gkpA in training set T0547 113 :KAELLLAMA 1gkpA 135 :EGQLREIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59041 # 1g8mA.113.35 read from T0547.t04.many.frag # found chain 1g8mA in training set T0547 113 :KAELLLAMA 1g8mA 36 :GGTATALRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=59042 # 1wbhA.113.77 read from T0547.t04.many.frag # found chain 1wbhA in training set T0547 113 :KAELLLAMA 1wbhA 77 :PQQLAEVTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=59043 # 1n2zA.113.9 read from T0547.t04.many.frag # found chain 1n2zA in template set T0547 113 :KAELLLAMA 1n2zA 31 :PANTELAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59044 # 1w6kA.113.123 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 113 :KAELLLAMA 1w6kA 124 :REEIVRYLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=59045 # 1mw5A.113.72 read from T0547.t04.many.frag # found chain 1mw5A in template set T0547 113 :KAELLLAMA 1mw5A 70 :WLNLDDALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=59046 # 1z70X.113.155 read from T0547.t04.many.frag # found chain 1z70X in training set T0547 113 :KAELLLAMA 1z70X 1228 :EAEWEYSCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=59047 # 1u7nA.113.102 read from T0547.t04.many.frag # found chain 1u7nA in template set T0547 113 :KAELLLAMA 1u7nA 100 :TGALLAAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59048 # 1y0zA.113.73 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 113 :KAELLLAMA 1y0zA 74 :ADDFNDVVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=59049 # 1mla.113.92 read from T0547.t04.many.frag # found chain 1mla in training set T0547 113 :KAELLLAMA 1mla 93 :LGEYSALVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=59050 # 1t0fA.113.63 read from T0547.t04.many.frag # found chain 1t0fA in template set T0547 113 :KAELLLAMA 1t0fA 61 :DLELAVFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=59051 # 1uuhA.113.43 read from T0547.t04.many.frag # found chain 1uuhA in template set T0547 113 :KAELLLAMA 1uuhA 63 :MAQMEKALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=59052 # 1jr2A.113.121 read from T0547.t04.many.frag # found chain 1jr2A in template set T0547 113 :KAELLLAMA 1jr2A 101 :NATASLVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=59053 # 1xp8A.113.56 read from T0547.t04.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)A114 (1xp8A)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E115 (1xp8A)S56 because E (beta_S) conformation "forbidden" or filtered. T0547 113 :K 1xp8A 54 :T T0547 116 :LLLAMA 1xp8A 57 :LSLDLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=59055 # 1m9xC.113.48 read from T0547.t04.many.frag # found chain 1m9xC in training set T0547 113 :KAELLLAMA 1m9xC 49 :PQDLNTMLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=59056 # 2etvA.113.33 read from T0547.t04.many.frag # found chain 2etvA in training set T0547 113 :KAELLLAMA 2etvA 46 :PGALRLIAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=59057 # 1twdA.113.10 read from T0547.t04.many.frag # found chain 1twdA in training set T0547 113 :KAELLLAMA 1twdA 11 :MECALTAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=59058 # 1eyeA.113.89 read from T0547.t04.many.frag # found chain 1eyeA in template set T0547 113 :KAELLLAMA 1eyeA 90 :ADVARAALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=59059 # 1o2dA.113.83 read from T0547.t04.many.frag # found chain 1o2dA in training set T0547 113 :KAELLLAMA 1o2dA 72 :FDNVMKAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=59060 # 1vp4A.113.118 read from T0547.t04.many.frag # found chain 1vp4A in template set T0547 113 :KAELLLAMA 1vp4A 107 :QQALDLIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=59061 # 1od6A.113.13 read from T0547.t04.many.frag # found chain 1od6A in training set T0547 113 :KAELLLAMA 1od6A 14 :NGHLDVIQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=59062 # 1bouA.113.88 read from T0547.t04.many.frag # found chain 1bouA in template set T0547 113 :KAELLLAMA 1bouA 89 :VYFLSKLFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=59063 # 1f1eA.113.84 read from T0547.t04.many.frag # found chain 1f1eA in training set T0547 113 :KAELLLAMA 1f1eA 85 :RATVRRILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=59064 # 1knwA.114.77 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Y122 (1knwA)A86 because G (3-10) conformation "forbidden" or filtered. T0547 114 :AELLLAMA 1knwA 78 :GEIERALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=59065 # 7odcA.114.92 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 114 :AELLLAMAY 7odcA 93 :TEIQLVQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59066 # 1rcqA.114.60 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 114 :AELLLAMAY 1rcqA 61 :EEGLELREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59067 # 1pe9A.114.41 read from T0547.t04.many.frag # found chain 1pe9A in training set T0547 114 :AELLLAMAY 1pe9A 42 :SEFTSALSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59068 # 1pii.114.120 read from T0547.t04.many.frag # found chain 1pii in template set T0547 114 :AELLLAMAY 1pii 121 :YQIYLARYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=59069 # 1z7xW.114.159 read from T0547.t04.many.frag # found chain 1z7xW in template set T0547 114 :AELLLAMAY 1z7xW 159 :EPLASVLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59070 # 1g8mA.114.36 read from T0547.t04.many.frag # found chain 1g8mA in training set T0547 114 :AELLLAMAY 1g8mA 37 :GTATALRDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59071 # 1n2zA.114.10 read from T0547.t04.many.frag # found chain 1n2zA in template set T0547 114 :AELLLAMAY 1n2zA 32 :ANTELAFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59072 # 1gkpA.114.134 read from T0547.t04.many.frag # found chain 1gkpA in training set T0547 114 :AELLLAMAY 1gkpA 136 :GQLREIVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=59073 # 1yxyA.114.58 read from T0547.t04.many.frag # found chain 1yxyA in training set T0547 114 :AELLLAMAY 1yxyA 59 :RDIKEIQAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=59074 # 1jr2A.114.122 read from T0547.t04.many.frag # found chain 1jr2A in template set T0547 114 :AELLLAMAY 1jr2A 102 :ATASLVSKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=59075 # 1mw5A.114.73 read from T0547.t04.many.frag # found chain 1mw5A in template set T0547 114 :AELLLAMAY 1mw5A 71 :LNLDDALQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59076 # 1wbhA.114.78 read from T0547.t04.many.frag # found chain 1wbhA in training set T0547 114 :AELLLAMAY 1wbhA 78 :QQLAEVTEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59077 # 1z70X.114.156 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)Y122 (1z70X)G1237 because L (left) conformation "forbidden" or filtered. T0547 114 :AELLLAMA 1z70X 1229 :AEWEYSCR Number of specific fragments extracted= 1 number of extra gaps= 1 total=59078 # 1eyeA.114.90 read from T0547.t04.many.frag # found chain 1eyeA in template set T0547 114 :AELLLAMAY 1eyeA 91 :DVARAALQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=59079 # 1uuhA.114.44 read from T0547.t04.many.frag # found chain 1uuhA in template set T0547 114 :AELLLAMAY 1uuhA 64 :AQMEKALSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=59080 # 1w6kA.114.124 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 114 :AELLLAMAY 1w6kA 125 :EEIVRYLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=59081 # 2cw6A.114.83 read from T0547.t04.many.frag # found chain 2cw6A in template set T0547 114 :AELLLAMAY 2cw6A 111 :KGFEAAVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59082 # 1h4gA.114.160 read from T0547.t04.many.frag # found chain 1h4gA in training set T0547 114 :AELLLAMAY 1h4gA 161 :NHFRAWENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59083 # 2d13A.114.18 read from T0547.t04.many.frag # found chain 2d13A in template set T0547 114 :AELLLAMAY 2d13A 19 :YALYWALKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=59084 # 1twdA.114.11 read from T0547.t04.many.frag # found chain 1twdA in training set T0547 114 :AELLLAMAY 1twdA 12 :ECALTAQQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=59085 # 1u7nA.114.103 read from T0547.t04.many.frag # found chain 1u7nA in template set T0547 114 :AELLLAMAY 1u7nA 101 :GALLAAGLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=59086 # 1xp8A.114.57 read from T0547.t04.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)A114 (1xp8A)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1xp8A 56 :SLSLDLAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=59087 # 2etvA.114.34 read from T0547.t04.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)A114 (2etvA)G47 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y122 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)A57 T0547 115 :ELLLAMA 2etvA 48 :ALRLIAY Number of specific fragments extracted= 1 number of extra gaps= 1 total=59088 # 1mla.114.93 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)Y122 (1mla)A102 because G (3-10) conformation "forbidden" or filtered. T0547 114 :AELLLAMA 1mla 94 :GEYSALVC Number of specific fragments extracted= 1 number of extra gaps= 1 total=59089 # 1m9xC.114.49 read from T0547.t04.many.frag # found chain 1m9xC in training set T0547 114 :AELLLAMAY 1m9xC 50 :QDLNTMLNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=59090 # 1t0fA.114.64 read from T0547.t04.many.frag # found chain 1t0fA in template set T0547 114 :AELLLAMAY 1t0fA 62 :LELAVFLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59091 # 1vp4A.114.119 read from T0547.t04.many.frag # found chain 1vp4A in template set T0547 114 :AELLLAMAY 1vp4A 108 :QALDLIGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59092 1yt5A expands to /projects/compbio/data/pdb/1yt5.pdb.gz 1yt5A:# 1yt5A.114.51 read from T0547.t04.many.frag # adding 1yt5A to template set # found chain 1yt5A in template set T0547 114 :AELLLAMAY 1yt5A 52 :GTVLKAAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=59093 # 1otsA.114.109 read from T0547.t04.many.frag # found chain 1otsA in template set Warning: unaligning (T0547)Y122 (1otsA)D118 because L (left) conformation "forbidden" or filtered. T0547 114 :AELLLAMA 1otsA 110 :PEIEGALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=59094 # 1knwA.115.78 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N123 (1knwA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1knwA 79 :EIERALAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=59095 # 7odcA.115.93 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 115 :ELLLAMAYN 7odcA 94 :EIQLVQGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59096 # 1pe9A.115.42 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)N123 (1pe9A)G51 because S (epsilon) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1pe9A 43 :EFTSALSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=59097 # 1rcqA.115.61 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N123 (1rcqA)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1rcqA 62 :EGLELREA Number of specific fragments extracted= 1 number of extra gaps= 1 total=59098 # 1pii.115.121 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)N123 (1pii)Q130 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1pii 122 :QIYLARYY Number of specific fragments extracted= 1 number of extra gaps= 1 total=59099 # 1z7xW.115.160 read from T0547.t04.many.frag # found chain 1z7xW in template set T0547 115 :ELLLAMAYN 1z7xW 160 :PLASVLRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=59100 # 1g8mA.115.37 read from T0547.t04.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)N123 (1g8mA)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1g8mA 38 :TATALRDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=59101 # 1n2zA.115.11 read from T0547.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)N123 (1n2zA)G41 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1n2zA 33 :NTELAFAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=59102 # 1gkpA.115.135 read from T0547.t04.many.frag # found chain 1gkpA in training set T0547 115 :ELLLAMAYN 1gkpA 137 :QLREIVADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59103 # 1z70X.115.157 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)Y122 (1z70X)G1237 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (1z70X)G1238 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMA 1z70X 1230 :EWEYSCR Number of specific fragments extracted= 1 number of extra gaps= 1 total=59104 # 1jr2A.115.123 read from T0547.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)N123 (1jr2A)G111 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1jr2A 103 :TASLVSKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=59105 # 1wbhA.115.79 read from T0547.t04.many.frag # found chain 1wbhA in training set T0547 115 :ELLLAMAYN 1wbhA 79 :QLAEVTEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59106 # 1mw5A.115.74 read from T0547.t04.many.frag # found chain 1mw5A in template set Warning: unaligning (T0547)N123 (1mw5A)V80 because P (beta_P) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1mw5A 72 :NLDDALQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=59107 # 1eyeA.115.91 read from T0547.t04.many.frag # found chain 1eyeA in template set T0547 115 :ELLLAMAYN 1eyeA 92 :VARAALQNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59108 # 2d13A.115.19 read from T0547.t04.many.frag # found chain 2d13A in template set T0547 115 :ELLLAMAYN 2d13A 20 :ALYWALKSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59109 # 1uuhA.115.45 read from T0547.t04.many.frag # found chain 1uuhA in template set T0547 115 :ELLLAMAYN 1uuhA 65 :QMEKALSIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59110 # 1yxyA.115.59 read from T0547.t04.many.frag # found chain 1yxyA in training set T0547 115 :ELLLAMAYN 1yxyA 60 :DIKEIQAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=59111 # 1h4gA.115.161 read from T0547.t04.many.frag # found chain 1h4gA in training set Warning: unaligning (T0547)N123 (1h4gA)G170 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1h4gA 162 :HFRAWENL Number of specific fragments extracted= 1 number of extra gaps= 1 total=59112 # 2cw6A.115.84 read from T0547.t04.many.frag # found chain 2cw6A in template set Warning: unaligning (T0547)Y122 (2cw6A)A119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (2cw6A)G120 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMA 2cw6A 112 :GFEAAVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=59113 # 1xp8A.115.58 read from T0547.t04.many.frag # found chain 1xp8A in template set T0547 115 :ELLLAMAYN 1xp8A 56 :SLSLDLALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59114 # 1otsA.115.110 read from T0547.t04.many.frag # found chain 1otsA in template set Warning: unaligning (T0547)Y122 (1otsA)D118 because L (left) conformation "forbidden" or filtered. T0547 115 :ELLLAMA 1otsA 111 :EIEGALE T0547 123 :N 1otsA 119 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=59116 # 1mla.115.94 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)N123 (1mla)G103 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1mla 95 :EYSALVCA Number of specific fragments extracted= 1 number of extra gaps= 1 total=59117 # 1twdA.115.12 read from T0547.t04.many.frag # found chain 1twdA in training set T0547 115 :ELLLAMAYN 1twdA 13 :CALTAQQNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59118 # 1l8aA.115.240 read from T0547.t04.many.frag # found chain 1l8aA in template set T0547 115 :ELLLAMAYN 1l8aA 241 :AITIATREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=59119 # 1f1eA.115.8 read from T0547.t04.many.frag # found chain 1f1eA in training set T0547 115 :ELLLAMAYN 1f1eA 9 :AIERIFRQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59120 # 2etvA.115.35 read from T0547.t04.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)Y122 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)A57 T0547 115 :ELLLAMA 2etvA 48 :ALRLIAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=59121 # 1yt5A.115.52 read from T0547.t04.many.frag # found chain 1yt5A in template set T0547 115 :ELLLAMAYN 1yt5A 53 :TVLKAAKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59122 # 1m9xC.115.50 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)Y122 (1m9xC)T58 because G (3-10) conformation "forbidden" or filtered. T0547 115 :ELLLAMA 1m9xC 51 :DLNTMLN T0547 123 :N 1m9xC 59 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=59124 # 1t0fA.115.65 read from T0547.t04.many.frag # found chain 1t0fA in template set T0547 115 :ELLLAMAYN 1t0fA 63 :ELAVFLSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=59125 # 2fb6A.115.62 read from T0547.t04.many.frag # found chain 2fb6A in training set Warning: unaligning (T0547)N123 (2fb6A)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 2fb6A 60 :EILEMLQS Number of specific fragments extracted= 1 number of extra gaps= 1 total=59126 # 1knwA.116.79 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N123 (1knwA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1knwA 80 :IERALAA T0547 124 :N 1knwA 88 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=59128 # 1rcqA.116.62 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N124 (1rcqA)I71 because P (beta_P) conformation "forbidden" or filtered. T0547 116 :LLLAMAYN 1rcqA 63 :GLELREAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=59129 # 7odcA.116.94 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N123 (7odcA)G102 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 7odcA 95 :IQLVQGL T0547 124 :N 7odcA 103 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=59131 # 1pe9A.116.43 read from T0547.t04.many.frag # found chain 1pe9A in training set T0547 116 :LLLAMAYNN 1pe9A 44 :FTSALSAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59132 # 1g8mA.116.38 read from T0547.t04.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)Y122 (1g8mA)A45 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (1g8mA)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMA 1g8mA 39 :ATALRD T0547 124 :N 1g8mA 47 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=59134 # 1pii.116.122 read from T0547.t04.many.frag # found chain 1pii in template set T0547 116 :LLLAMAYNN 1pii 123 :IYLARYYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59135 # 1z7xW.116.161 read from T0547.t04.many.frag # found chain 1z7xW in template set T0547 116 :LLLAMAYNN 1z7xW 161 :LASVLRAKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=59136 # 1n2zA.116.12 read from T0547.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)Y122 (1n2zA)A40 because G (3-10) conformation "forbidden" or filtered. T0547 116 :LLLAMA 1n2zA 34 :TELAFA T0547 123 :NN 1n2zA 41 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=59138 # 2d13A.116.20 read from T0547.t04.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)N123 (2d13A)G28 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 2d13A 21 :LYWALKS T0547 124 :N 2d13A 29 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=59140 # 1wbhA.116.80 read from T0547.t04.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)N124 (1wbhA)A88 because P (beta_P) conformation "forbidden" or filtered. T0547 116 :LLLAMAYN 1wbhA 80 :LAEVTEAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=59141 # 1z70X.116.158 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)Y122 (1z70X)G1237 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (1z70X)G1238 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1z70X)L1239 because P (beta_P) conformation "forbidden" or filtered. T0547 116 :LLLAMA 1z70X 1231 :WEYSCR Number of specific fragments extracted= 1 number of extra gaps= 1 total=59142 # 1f1eA.116.9 read from T0547.t04.many.frag # found chain 1f1eA in training set T0547 116 :LLLAMAYNN 1f1eA 10 :IERIFRQGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=59143 # 1eyeA.116.92 read from T0547.t04.many.frag # found chain 1eyeA in template set Warning: unaligning (T0547)N123 (1eyeA)G100 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1eyeA 93 :ARAALQN T0547 124 :N 1eyeA 101 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=59145 # 1jr2A.116.124 read from T0547.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)N123 (1jr2A)G111 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 T0547 116 :LLLAMAY 1jr2A 104 :ASLVSKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=59146 # 1mw5A.116.75 read from T0547.t04.many.frag # found chain 1mw5A in template set T0547 116 :LLLAMAYNN 1mw5A 73 :LDDALQAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=59147 # 1gkpA.116.136 read from T0547.t04.many.frag # found chain 1gkpA in training set T0547 116 :LLLAMAYNN 1gkpA 138 :LREIVADGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=59148 # 1l8aA.116.241 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)N123 (1l8aA)K249 because L (left) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1l8aA 242 :ITIATRE T0547 124 :N 1l8aA 250 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=59150 # 1otsA.116.111 read from T0547.t04.many.frag # found chain 1otsA in template set T0547 116 :LLLAMAYNN 1otsA 112 :IEGALEDQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=59151 # 2cw6A.116.85 read from T0547.t04.many.frag # found chain 2cw6A in template set Warning: unaligning (T0547)N123 (2cw6A)G120 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 2cw6A 113 :FEAAVAA T0547 124 :N 2cw6A 121 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=59153 # 1xp8A.116.59 read from T0547.t04.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)N123 (1xp8A)G64 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1xp8A 57 :LSLDLAL T0547 124 :N 1xp8A 65 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=59155 # 1mla.116.95 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)N123 (1mla)G103 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1mla 96 :YSALVCA T0547 124 :N 1mla 104 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=59157 # 1a4iA.116.152 read from T0547.t04.many.frag # found chain 1a4iA in training set T0547 116 :LLLAMAYNN 1a4iA 153 :LELIKETGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=59158 # 1mvlA.116.121 read from T0547.t04.many.frag # found chain 1mvlA in template set Warning: unaligning (T0547)N123 (1mvlA)W129 because P (beta_P) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1mvlA 122 :LTCIIRA T0547 124 :N 1mvlA 130 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=59160 # 1qwnA.116.212 read from T0547.t04.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)Y122 (1qwnA)S219 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (1qwnA)G220 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMA 1qwnA 213 :PYILQK T0547 124 :N 1qwnA 221 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=59162 # 1dd9A.116.152 read from T0547.t04.many.frag # found chain 1dd9A in training set T0547 116 :LLLAMAYNN 1dd9A 248 :LYEAQQDNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59163 # 2fb6A.116.63 read from T0547.t04.many.frag # found chain 2fb6A in training set Warning: unaligning (T0547)N123 (2fb6A)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 2fb6A 61 :ILEMLQS T0547 124 :N 2fb6A 69 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=59165 # 2etvA.116.36 read from T0547.t04.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)Y122 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)A57 Warning: unaligning (T0547)N124 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2etvA)A57 T0547 116 :LLLAMA 2etvA 49 :LRLIAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=59166 # 1m9xC.116.51 read from T0547.t04.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)N123 (1m9xC)V59 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1m9xC)G60 because P (beta_P) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1m9xC 52 :LNTMLNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=59167 # 1yxyA.116.60 read from T0547.t04.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)N124 (1yxyA)D69 because G (3-10) conformation "forbidden" or filtered. T0547 116 :LLLAMAYN 1yxyA 61 :IKEIQAIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=59168 # 1byi.116.54 read from T0547.t04.many.frag # found chain 1byi in training set T0547 116 :LLLAMAYNN 1byi 55 :ALALQRNSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=59169 # 1rcqA.117.63 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N123 (1rcqA)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1rcqA 64 :LELREA T0547 124 :NE 1rcqA 71 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=59171 # 1pe9A.117.44 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)N123 (1pe9A)G51 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1pe9A)A52 because G (3-10) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1pe9A 45 :TSALSA T0547 125 :E 1pe9A 53 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=59173 # 7odcA.117.95 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N124 (7odcA)V103 because P (beta_P) conformation "forbidden" or filtered. T0547 117 :LLAMAYN 7odcA 96 :QLVQGLG T0547 125 :E 7odcA 104 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=59175 # 1n2zA.117.13 read from T0547.t04.many.frag # found chain 1n2zA in template set T0547 117 :LLAMAYNNE 1n2zA 35 :ELAFAAGIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=59176 # 1knwA.117.80 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 117 :LLAMAYNNE 1knwA 81 :ERALAAGYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=59177 # 1g8mA.117.39 read from T0547.t04.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)N123 (1g8mA)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1g8mA 40 :TALRDA T0547 124 :NE 1g8mA 47 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=59179 # 1f1eA.117.10 read from T0547.t04.many.frag # found chain 1f1eA in training set T0547 117 :LLAMAYNNE 1f1eA 11 :ERIFRQGIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59180 # 2d13A.117.21 read from T0547.t04.many.frag # found chain 2d13A in template set T0547 117 :LLAMAYNNE 2d13A 22 :YWALKSGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=59181 # 1z7xW.117.162 read from T0547.t04.many.frag # found chain 1z7xW in template set T0547 117 :LLAMAYNNE 1z7xW 162 :ASVLRAKPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=59182 # 1pii.117.123 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)N123 (1pii)Q130 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1pii 124 :YLARYY T0547 124 :NE 1pii 131 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=59184 # 1l8aA.117.242 read from T0547.t04.many.frag # found chain 1l8aA in template set T0547 117 :LLAMAYNNE 1l8aA 243 :TIATREKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=59185 # 1z70X.117.159 read from T0547.t04.many.frag # found chain 1z70X in training set T0547 117 :LLAMAYNNE 1z70X 1232 :EYSCRGGLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=59186 # 2cw6A.117.86 read from T0547.t04.many.frag # found chain 2cw6A in template set T0547 117 :LLAMAYNNE 2cw6A 114 :EAAVAAGAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=59187 # 1mvlA.117.122 read from T0547.t04.many.frag # found chain 1mvlA in template set T0547 117 :LLAMAYNNE 1mvlA 123 :TCIIRAWDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=59188 # 1jr2A.117.125 read from T0547.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)N123 (1jr2A)G111 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 Warning: unaligning (T0547)E125 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)D113 T0547 117 :LLAMAY 1jr2A 105 :SLVSKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=59189 # 1vlpA.117.228 read from T0547.t04.many.frag # found chain 1vlpA in training set T0547 117 :LLAMAYNNE 1vlpA 217 :LFAKKYGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=59190 # 1wbhA.117.81 read from T0547.t04.many.frag # found chain 1wbhA in training set T0547 117 :LLAMAYNNE 1wbhA 81 :AEVTEAGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=59191 # 1pswA.117.94 read from T0547.t04.many.frag # found chain 1pswA in template set Warning: unaligning (T0547)N123 (1pswA)G101 because L (left) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1pswA 95 :LVPLFA T0547 124 :NE 1pswA 102 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=59193 # 1dd9A.117.153 read from T0547.t04.many.frag # found chain 1dd9A in training set T0547 117 :LLAMAYNNE 1dd9A 249 :YEAQQDNAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=59194 # 1wmwA.117.48 read from T0547.t04.many.frag # found chain 1wmwA in training set T0547 117 :LLAMAYNNE 1wmwA 49 :YSALAHGAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=59195 # 1xp8A.117.60 read from T0547.t04.many.frag # found chain 1xp8A in template set Warning: unaligning (T0547)N123 (1xp8A)G64 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1xp8A)G66 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1xp8A 58 :SLDLAL T0547 124 :N 1xp8A 65 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=59197 # 1a4iA.117.153 read from T0547.t04.many.frag # found chain 1a4iA in training set Warning: unaligning (T0547)N123 (1a4iA)G160 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1a4iA 154 :ELIKET T0547 124 :NE 1a4iA 161 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=59199 # 1mw5A.117.76 read from T0547.t04.many.frag # found chain 1mw5A in template set Warning: unaligning (T0547)N124 (1mw5A)V81 because P (beta_P) conformation "forbidden" or filtered. T0547 117 :LLAMAYN 1mw5A 74 :DDALQAV T0547 125 :E 1mw5A 82 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=59201 # 1mla.117.96 read from T0547.t04.many.frag # found chain 1mla in training set Warning: unaligning (T0547)N123 (1mla)G103 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1mla 97 :SALVCA T0547 124 :NE 1mla 104 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=59203 # 1eyeA.117.93 read from T0547.t04.many.frag # found chain 1eyeA in template set T0547 117 :LLAMAYNNE 1eyeA 94 :RAALQNGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=59204 # 1zjcA.117.47 read from T0547.t04.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)N123 (1zjcA)G51 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1zjcA 45 :EEAYHC T0547 124 :NE 1zjcA 52 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=59206 # 1oxwA.117.69 read from T0547.t04.many.frag # found chain 1oxwA in template set Warning: unaligning (T0547)N124 (1oxwA)N90 because P (beta_P) conformation "forbidden" or filtered. T0547 117 :LLAMAYN 1oxwA 83 :TAMISTP T0547 125 :E 1oxwA 91 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=59208 # 1rlzA.117.221 read from T0547.t04.many.frag # found chain 1rlzA in template set T0547 117 :LLAMAYNNE 1rlzA 222 :YWAQKNHIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=59209 # 2fb6A.117.64 read from T0547.t04.many.frag # found chain 2fb6A in training set Warning: unaligning (T0547)N123 (2fb6A)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 2fb6A 62 :LEMLQS T0547 124 :NE 2fb6A 69 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=59211 # 1gkpA.117.137 read from T0547.t04.many.frag # found chain 1gkpA in training set Warning: unaligning (T0547)N123 (1gkpA)G145 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1gkpA 139 :REIVAD T0547 124 :NE 1gkpA 146 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=59213 # 7odcA.118.96 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 118 :LAMAYNNEG 7odcA 97 :LVQGLGVPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59214 # 1rcqA.118.64 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 118 :LAMAYNNEG 1rcqA 65 :ELREAGIRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=59215 # 1n2zA.118.14 read from T0547.t04.many.frag # found chain 1n2zA in template set T0547 118 :LAMAYNNEG 1n2zA 36 :LAFAAGITP Number of specific fragments extracted= 1 number of extra gaps= 0 total=59216 # 1f1eA.118.11 read from T0547.t04.many.frag # found chain 1f1eA in training set T0547 118 :LAMAYNNEG 1f1eA 12 :RIFRQGIGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=59217 # 1pe9A.118.45 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)E125 (1pe9A)E53 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAYNN 1pe9A 46 :SALSAGA T0547 126 :G 1pe9A 54 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=59219 # 1g8mA.118.40 read from T0547.t04.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)E125 (1g8mA)P48 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAYNN 1g8mA 41 :ALRDAGL T0547 126 :G 1g8mA 49 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=59221 # 2d13A.118.22 read from T0547.t04.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)N124 (2d13A)L29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (2d13A)V31 because N (gamma') conformation "forbidden" or filtered. T0547 118 :LAMAYN 2d13A 23 :WALKSG T0547 125 :E 2d13A 30 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=59223 # 1knwA.118.81 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N123 (1knwA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 118 :LAMAY 1knwA 82 :RALAA T0547 124 :NEG 1knwA 88 :YNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=59225 # 1mvlA.118.123 read from T0547.t04.many.frag # found chain 1mvlA in template set Warning: unaligning (T0547)Y122 (1mvlA)A128 because G (3-10) conformation "forbidden" or filtered. T0547 118 :LAMA 1mvlA 124 :CIIR T0547 123 :NNEG 1mvlA 129 :WDYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=59227 # 1vlpA.118.229 read from T0547.t04.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)N123 (1vlpA)G223 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1vlpA)K225 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAY 1vlpA 218 :FAKKY T0547 124 :N 1vlpA 224 :V T0547 126 :G 1vlpA 226 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=59230 # 1z7xW.118.163 read from T0547.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)G126 (1z7xW)F171 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAYNNE 1z7xW 163 :SVLRAKPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=59231 # 1zjcA.118.48 read from T0547.t04.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)N123 (1zjcA)G51 because T (delta_L) conformation "forbidden" or filtered. T0547 118 :LAMAY 1zjcA 46 :EAYHC T0547 124 :NEG 1zjcA 52 :ASD Number of specific fragments extracted= 2 number of extra gaps= 1 total=59233 # 1itxA.118.267 read from T0547.t04.many.frag # found chain 1itxA in training set T0547 118 :LAMAYNNEG 1itxA 300 :AASAAGVPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=59234 # 1dd9A.118.154 read from T0547.t04.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)E125 (1dd9A)E257 because D (zeta) conformation "forbidden" or filtered. T0547 118 :LAMAYNN 1dd9A 250 :EAQQDNA T0547 126 :G 1dd9A 258 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=59236 # 1pswA.118.95 read from T0547.t04.many.frag # found chain 1pswA in template set T0547 118 :LAMAYNNEG 1pswA 96 :VPLFAGIPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=59237 # 1jr2A.118.126 read from T0547.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)N124 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 Warning: unaligning (T0547)E125 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)D113 Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)T114 T0547 118 :LAMAYN 1jr2A 106 :LVSKIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=59238 # 1z70X.118.160 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)Y122 (1z70X)G1237 because L (left) conformation "forbidden" or filtered. T0547 118 :LAMA 1z70X 1233 :YSCR T0547 123 :NNEG 1z70X 1238 :GLHN Number of specific fragments extracted= 2 number of extra gaps= 1 total=59240 # 1l8aA.118.243 read from T0547.t04.many.frag # found chain 1l8aA in template set T0547 118 :LAMAYNNEG 1l8aA 244 :IATREKLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=59241 # 1xp8A.118.61 read from T0547.t04.many.frag # found chain 1xp8A in template set T0547 118 :LAMAYNNEG 1xp8A 59 :LDLALGVGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59242 # 1v72A.118.73 read from T0547.t04.many.frag # found chain 1v72A in template set T0547 118 :LAMAYNNEG 1v72A 74 :LCLSAMTPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=59243 # 2f5xA.118.65 read from T0547.t04.many.frag # found chain 2f5xA in training set T0547 118 :LAMAYNNEG 2f5xA 54 :QVARAQPDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59244 # 1o08A.118.153 read from T0547.t04.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)E125 (1o08A)A1161 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAYNN 1o08A 1154 :AAHAVGV T0547 126 :G 1o08A 1162 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=59246 # 1wyzA.118.126 read from T0547.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0547)G126 (1wyzA)G135 because G (3-10) conformation "forbidden" or filtered. T0547 118 :LAMAYNNE 1wyzA 127 :SVMASGFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=59247 # 1u4bA.118.82 read from T0547.t04.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)N123 (1u4bA)G384 because L (left) conformation "forbidden" or filtered. T0547 118 :LAMAY 1u4bA 379 :ALKWK T0547 124 :NEG 1u4bA 385 :IEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59249 # 1pii.118.124 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G126 (1pii)A133 because Y (epsilon') conformation "forbidden" or filtered. T0547 118 :LAMAYNNE 1pii 125 :LARYYQAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=59250 # 1uarA.118.98 read from T0547.t04.many.frag # found chain 1uarA in training set T0547 118 :LAMAYNNEG 1uarA 99 :FFKYNGHKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=59251 # 1wmwA.118.49 read from T0547.t04.many.frag # found chain 1wmwA in training set Warning: unaligning (T0547)N123 (1wmwA)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1wmwA)P57 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAY 1wmwA 50 :SALAH T0547 124 :N 1wmwA 56 :A T0547 126 :G 1wmwA 58 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=59254 # 1vqoN.118.91 read from T0547.t04.many.frag # found chain 1vqoN in template set T0547 118 :LAMAYNNEG 1vqoN 91 :RAQEAGVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=59255 # 1k4iA.118.159 read from T0547.t04.many.frag # found chain 1k4iA in training set T0547 118 :LAMAYNNEG 1k4iA 160 :LCRLAGKRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=59256 # 2cw6A.118.87 read from T0547.t04.many.frag # found chain 2cw6A in template set T0547 118 :LAMAYNNEG 2cw6A 115 :AAVAAGAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=59257 # 7odcA.119.97 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 119 :AMAYNNEGA 7odcA 98 :VQGLGVPAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=59258 # 1n2zA.119.15 read from T0547.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)N124 (1n2zA)I42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1n2zA)P44 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAYN 1n2zA 37 :AFAAG T0547 125 :E 1n2zA 43 :T T0547 127 :A 1n2zA 45 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=59261 # 1f1eA.119.12 read from T0547.t04.many.frag # found chain 1f1eA in training set Warning: unaligning (T0547)E125 (1f1eA)G19 because S (epsilon) conformation "forbidden" or filtered. T0547 119 :AMAYNN 1f1eA 13 :IFRQGI T0547 126 :GA 1f1eA 20 :ER Number of specific fragments extracted= 2 number of extra gaps= 1 total=59263 # 1rcqA.119.65 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 119 :AMAYNNEGA 1rcqA 66 :LREAGIRQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=59264 # 1zjcA.119.49 read from T0547.t04.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)N123 (1zjcA)G51 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1zjcA)S53 because E (beta_S) conformation "forbidden" or filtered. T0547 119 :AMAY 1zjcA 47 :AYHC T0547 124 :N 1zjcA 52 :A T0547 126 :GA 1zjcA 54 :DV Number of specific fragments extracted= 3 number of extra gaps= 2 total=59267 # 1pe9A.119.46 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)N123 (1pe9A)G51 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1pe9A)A54 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAY 1pe9A 47 :ALSA T0547 124 :NE 1pe9A 52 :AE T0547 127 :A 1pe9A 55 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=59270 # 1g8mA.119.41 read from T0547.t04.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)N123 (1g8mA)G46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1g8mA)R50 because E (beta_S) conformation "forbidden" or filtered. T0547 119 :AMAY 1g8mA 42 :LRDA T0547 124 :NEG 1g8mA 47 :LPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=59272 # 1v72A.119.74 read from T0547.t04.many.frag # found chain 1v72A in template set T0547 119 :AMAYNNEGA 1v72A 75 :CLSAMTPPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=59273 # 1wyzA.119.127 read from T0547.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0547)E125 (1wyzA)N134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1wyzA)G135 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1wyzA)Q136 because G (3-10) conformation "forbidden" or filtered. T0547 119 :AMAYNN 1wyzA 128 :VMASGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=59274 # 1uarA.119.99 read from T0547.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)N123 (1uarA)G104 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1uarA)D107 because D (zeta) conformation "forbidden" or filtered. T0547 119 :AMAY 1uarA 100 :FKYN T0547 124 :NE 1uarA 105 :HK T0547 127 :A 1uarA 108 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=59277 # 1uwcA.119.144 read from T0547.t04.many.frag # found chain 1uwcA in training set T0547 119 :AMAYNNEGA 1uwcA 145 :QLSATYDNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=59278 # 1wzuA.119.42 read from T0547.t04.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)N123 (1wzuA)R47 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1wzuA)A50 because Y (epsilon') conformation "forbidden" or filtered. T0547 119 :AMAY 1wzuA 43 :RRAT T0547 124 :NE 1wzuA 48 :VD T0547 127 :A 1wzuA 51 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=59281 # 1mvlA.119.124 read from T0547.t04.many.frag # found chain 1mvlA in template set Warning: unaligning (T0547)N123 (1mvlA)W129 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAY 1mvlA 125 :IIRA T0547 124 :NEGA 1mvlA 130 :DYTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=59283 # 2d13A.119.23 read from T0547.t04.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)Y122 (2d13A)S27 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (2d13A)V31 because N (gamma') conformation "forbidden" or filtered. T0547 119 :AMA 2d13A 24 :ALK T0547 123 :NNE 2d13A 28 :GLR T0547 127 :A 2d13A 32 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=59286 # 1jr2A.119.127 read from T0547.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)N124 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 Warning: unaligning (T0547)E125 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)D113 Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)T114 Warning: unaligning (T0547)A127 (1jr2A)E115 because L (left) conformation "forbidden" or filtered. T0547 119 :AMAYN 1jr2A 107 :VSKIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=59287 # 1itxA.119.268 read from T0547.t04.many.frag # found chain 1itxA in training set Warning: unaligning (T0547)N123 (1itxA)G305 because T (delta_L) conformation "forbidden" or filtered. T0547 119 :AMAY 1itxA 301 :ASAA T0547 124 :NEGA 1itxA 306 :VPDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=59289 # 1pswA.119.96 read from T0547.t04.many.frag # found chain 1pswA in template set Warning: unaligning (T0547)G126 (1pswA)H104 because E (beta_S) conformation "forbidden" or filtered. T0547 119 :AMAYNNE 1pswA 97 :PLFAGIP T0547 127 :A 1pswA 105 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=59291 # 1oxxK.119.151 read from T0547.t04.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)Y122 (1oxxK)L155 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1oxxK)K157 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1oxxK)D158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1oxxK)P159 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMA 1oxxK 152 :ARA T0547 123 :N 1oxxK 156 :V T0547 127 :A 1oxxK 160 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=59294 # 1x7dA.119.120 read from T0547.t04.many.frag # found chain 1x7dA in training set T0547 119 :AMAYNNEGA 1x7dA 121 :AQALARPNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59295 # 1zbsA.119.102 read from T0547.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)A127 (1zbsA)G111 because Y (epsilon') conformation "forbidden" or filtered. T0547 119 :AMAYNNEG 1zbsA 103 :RALCGDSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=59296 # 1ct5A.119.76 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 119 :AMAYNNE 1ct5A 78 :KAKLLPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=59297 # 2f5xA.119.66 read from T0547.t04.many.frag # found chain 2f5xA in training set Warning: unaligning (T0547)A121 (2f5xA)R57 because G (3-10) conformation "forbidden" or filtered. T0547 119 :AM 2f5xA 55 :VA T0547 122 :YNNEGA 2f5xA 58 :AQPDGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=59299 # 1z70X.119.161 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)Y122 (1z70X)G1237 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (1z70X)G1238 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1z70X)H1240 because E (beta_S) conformation "forbidden" or filtered. T0547 119 :AMA 1z70X 1234 :SCR T0547 124 :N 1z70X 1239 :L T0547 126 :GA 1z70X 1241 :NR Number of specific fragments extracted= 3 number of extra gaps= 2 total=59302 # 1vlpA.119.230 read from T0547.t04.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)E125 (1vlpA)K225 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1vlpA)P226 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAYNN 1vlpA 219 :AKKYGV T0547 127 :A 1vlpA 227 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=59304 # 1knwA.119.82 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N123 (1knwA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 119 :AMAY 1knwA 83 :ALAA T0547 124 :NEGA 1knwA 88 :YNPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=59306 # 1z7xW.119.164 read from T0547.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)G126 (1z7xW)F171 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAYNNE 1z7xW 164 :VLRAKPD T0547 127 :A 1z7xW 172 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=59308 # 2apjA.119.102 read from T0547.t04.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)N123 (2apjA)E107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (2apjA)T108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (2apjA)A111 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAY 2apjA 103 :KNRL T0547 125 :EG 2apjA 109 :DS Number of specific fragments extracted= 2 number of extra gaps= 2 total=59310 # 2b0cA.119.157 read from T0547.t04.many.frag # found chain 2b0cA in template set T0547 119 :AMAYNNEGA 2b0cA 158 :LQAEGFSPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=59311 # 1vqoN.119.92 read from T0547.t04.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)G126 (1vqoN)E99 because E (beta_S) conformation "forbidden" or filtered. T0547 119 :AMAYNNE 1vqoN 92 :AQEAGVE T0547 127 :A 1vqoN 100 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=59313 # 1dd9A.119.155 read from T0547.t04.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)Y122 (1dd9A)D254 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (1dd9A)N255 because D (zeta) conformation "forbidden" or filtered. T0547 119 :AMA 1dd9A 251 :AQQ T0547 124 :NEGA 1dd9A 256 :AEPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=59315 # 7odcA.120.98 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 7odcA 99 :QGLGVPAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=59316 # 1f1eA.120.13 read from T0547.t04.many.frag # found chain 1f1eA in training set Warning: unaligning (T0547)E125 (1f1eA)G19 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1f1eA)E20 because G (3-10) conformation "forbidden" or filtered. T0547 120 :MAYNN 1f1eA 14 :FRQGI T0547 127 :AP 1f1eA 21 :RR Number of specific fragments extracted= 2 number of extra gaps= 1 total=59318 # 1n2zA.120.16 read from T0547.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)P128 (1n2zA)G46 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 1n2zA 38 :FAAGITPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=59319 # 1zjcA.120.50 read from T0547.t04.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)N123 (1zjcA)G51 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zjcA)R56 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 1zjcA 48 :YHC T0547 124 :NEGA 1zjcA 52 :ASDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=59321 # 1uwcA.120.145 read from T0547.t04.many.frag # found chain 1uwcA in training set Warning: unaligning (T0547)E125 (1uwcA)D151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1uwcA)R154 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNN 1uwcA 146 :LSATY T0547 126 :GA 1uwcA 152 :NV Number of specific fragments extracted= 2 number of extra gaps= 2 total=59323 # 1rcqA.120.66 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N123 (1rcqA)G70 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1rcqA)I71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1rcqA)I75 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 1rcqA 67 :REA T0547 125 :EGA 1rcqA 72 :RQP Number of specific fragments extracted= 2 number of extra gaps= 2 total=59325 # 1pe9A.120.47 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)P128 (1pe9A)I56 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 1pe9A 48 :LSAGAEAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=59326 # 1ct5A.120.77 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 120 :MAYNNE 1ct5A 79 :AKLLPD T0547 128 :P 1ct5A 87 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=59328 # 1wyzA.120.128 read from T0547.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0547)P128 (1wyzA)S137 because D (zeta) conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 1wyzA 129 :MASGFNGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=59329 # 1oxxK.120.152 read from T0547.t04.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)E125 (1oxxK)D158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1oxxK)S160 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1oxxK)L161 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNN 1oxxK 153 :RALVK T0547 126 :G 1oxxK 159 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=59331 # 2apjA.120.103 read from T0547.t04.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)N123 (2apjA)E107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2apjA)V112 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 2apjA 104 :NRL T0547 124 :NEGA 2apjA 108 :TDSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=59333 # 1wzuA.120.43 read from T0547.t04.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)N123 (1wzuA)R47 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 1wzuA 44 :RAT T0547 124 :NEGA 1wzuA 48 :VDAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=59335 # 1uarA.120.100 read from T0547.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)N123 (1uarA)G104 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1uarA)R109 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 1uarA 101 :KYN T0547 124 :NEGA 1uarA 105 :HKDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=59337 # 2az4A.120.246 read from T0547.t04.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. T0547 120 :MAYNNEG 2az4A 247 :LELENPN T0547 128 :P 2az4A 255 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=59339 # 2b0cA.120.158 read from T0547.t04.many.frag # found chain 2b0cA in template set Warning: unaligning (T0547)N123 (2b0cA)G162 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2b0cA)D167 because G (3-10) conformation "forbidden" or filtered. T0547 120 :MAY 2b0cA 159 :QAE T0547 124 :NEGA 2b0cA 163 :FSPS Number of specific fragments extracted= 2 number of extra gaps= 2 total=59341 # 1vjoA.120.102 read from T0547.t04.many.frag # found chain 1vjoA in training set T0547 120 :MAYNNEGAP 1vjoA 91 :ANAVEPGDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=59342 # 1pswA.120.97 read from T0547.t04.many.frag # found chain 1pswA in template set Warning: unaligning (T0547)G126 (1pswA)H104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1pswA)T106 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNE 1pswA 98 :LFAGIP T0547 127 :A 1pswA 105 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=59344 # 1v72A.120.75 read from T0547.t04.many.frag # found chain 1v72A in template set T0547 120 :MAYNNEGAP 1v72A 76 :LSAMTPPWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59345 # 1x7dA.120.121 read from T0547.t04.many.frag # found chain 1x7dA in training set Warning: unaligning (T0547)Y122 (1x7dA)L124 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1x7dA)N128 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1x7dA)R130 because G (3-10) conformation "forbidden" or filtered. T0547 120 :MA 1x7dA 122 :QA T0547 123 :NNE 1x7dA 125 :ARP T0547 127 :A 1x7dA 129 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=59348 # 2f5xA.120.67 read from T0547.t04.many.frag # found chain 2f5xA in training set Warning: unaligning (T0547)P128 (2f5xA)S64 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 2f5xA 56 :ARAQPDGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=59349 # 1zbsA.120.103 read from T0547.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)N123 (1zbsA)G107 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1zbsA)E110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1zbsA)G111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zbsA)I112 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 1zbsA 104 :ALC T0547 124 :NE 1zbsA 108 :DS Number of specific fragments extracted= 2 number of extra gaps= 2 total=59351 # 1jr2A.120.128 read from T0547.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)N123 (1jr2A)G111 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 Warning: unaligning (T0547)E125 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)D113 Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)T114 Warning: unaligning (T0547)P128 (1jr2A)G116 because S (epsilon) conformation "forbidden" or filtered. T0547 120 :MAY 1jr2A 108 :SKI T0547 127 :A 1jr2A 115 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=59353 # 1g60A.120.206 read from T0547.t04.many.frag # found chain 1g60A in template set Warning: unaligning (T0547)N123 (1g60A)S210 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1g60A)L215 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 1g60A 207 :RAS T0547 124 :NEGA 1g60A 211 :NPND Number of specific fragments extracted= 2 number of extra gaps= 2 total=59355 # 1r9jA.120.172 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)P128 (1r9jA)I179 because D (zeta) conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 1r9jA 171 :GHLALEKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=59356 # 1ej0A.120.40 read from T0547.t04.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)N124 (1ej0A)G74 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1ej0A)K76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 120 :MAYN 1ej0A 70 :VTQI T0547 125 :E 1ej0A 75 :G T0547 127 :A 1ej0A 77 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=59359 # 1c7nA.120.106 read from T0547.t04.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)N123 (1c7nA)T110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1c7nA)P112 because P (beta_P) conformation "forbidden" or filtered. T0547 120 :MAY 1c7nA 107 :REF T0547 124 :N 1c7nA 111 :K T0547 126 :GAP 1c7nA 113 :GDG Number of specific fragments extracted= 3 number of extra gaps= 2 total=59362 # 2b4vA.120.51 read from T0547.t04.many.frag # found chain 2b4vA in training set Warning: unaligning (T0547)N124 (2b4vA)T75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2b4vA)K79 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYN 2b4vA 71 :ADKW T0547 125 :EGA 2b4vA 76 :PDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=59364 # 1mvlA.120.125 read from T0547.t04.many.frag # found chain 1mvlA in template set T0547 120 :MAYNNEGAP 1mvlA 126 :IRAWDYTKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=59365 # 1vqoN.120.93 read from T0547.t04.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)P128 (1vqoN)V101 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 1vqoN 93 :QEAGVEEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=59366 1vb3A expands to /projects/compbio/data/pdb/1vb3.pdb.gz 1vb3A:# 1vb3A.120.143 read from T0547.t04.many.frag # adding 1vb3A to template set # found chain 1vb3A in template set Warning: unaligning (T0547)G126 (1vb3A)N150 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vb3A)K152 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNE 1vb3A 144 :AFYGLP T0547 127 :A 1vb3A 151 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=59368 # 7odcA.121.99 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y122 (7odcA)L101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (7odcA)G102 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 121 :A 7odcA 100 :G T0547 124 :NEGA 7odcA 103 :VPAE T0547 129 :I 7odcA 108 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=59371 # 1f1eA.121.14 read from T0547.t04.many.frag # found chain 1f1eA in training set Warning: unaligning (T0547)G126 (1f1eA)E20 because G (3-10) conformation "forbidden" or filtered. T0547 121 :AYNNE 1f1eA 15 :RQGIG T0547 127 :API 1f1eA 21 :RRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59373 # 1uwcA.121.146 read from T0547.t04.many.frag # found chain 1uwcA in training set Warning: unaligning (T0547)E125 (1uwcA)D151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1uwcA)R154 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNN 1uwcA 147 :SATY T0547 126 :GA 1uwcA 152 :NV T0547 129 :I 1uwcA 155 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=59376 # 2apjA.121.104 read from T0547.t04.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)P128 (2apjA)V112 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 2apjA 105 :RLETDSA T0547 129 :I 2apjA 113 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=59378 # 1zjcA.121.51 read from T0547.t04.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)P128 (1zjcA)R56 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1zjcA 49 :HCGASDV T0547 129 :I 1zjcA 57 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=59380 # 1wzuA.121.44 read from T0547.t04.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)N123 (1wzuA)R47 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1wzuA)D49 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1wzuA)A50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1wzuA 45 :AT T0547 124 :N 1wzuA 48 :V T0547 127 :A 1wzuA 51 :D T0547 129 :I 1wzuA 53 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=59384 # 2b0cA.121.159 read from T0547.t04.many.frag # found chain 2b0cA in template set Warning: unaligning (T0547)N123 (2b0cA)G162 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (2b0cA)S164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2b0cA)D167 because G (3-10) conformation "forbidden" or filtered. T0547 121 :AY 2b0cA 160 :AE T0547 124 :N 2b0cA 163 :F T0547 126 :GA 2b0cA 165 :PS T0547 129 :I 2b0cA 168 :T Number of specific fragments extracted= 4 number of extra gaps= 3 total=59388 # 1vjoA.121.103 read from T0547.t04.many.frag # found chain 1vjoA in training set T0547 121 :AYNNEGAPI 1vjoA 92 :NAVEPGDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=59389 # 1rcqA.121.67 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)P128 (1rcqA)I75 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1rcqA 68 :EAGIRQP T0547 129 :I 1rcqA 76 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=59391 # 1n2zA.121.17 read from T0547.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)N123 (1n2zA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1n2zA)I42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1n2zA)G46 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I129 (1n2zA)V47 because Y (epsilon') conformation "forbidden" or filtered. T0547 121 :AY 1n2zA 39 :AA T0547 125 :EGA 1n2zA 43 :TPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=59393 # 2az4A.121.247 read from T0547.t04.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. T0547 121 :AYNNEG 2az4A 248 :ELENPN T0547 128 :PI 2az4A 255 :QI Number of specific fragments extracted= 2 number of extra gaps= 1 total=59395 # 1wyzA.121.129 read from T0547.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0547)P128 (1wyzA)S137 because D (zeta) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1wyzA 130 :ASGFNGQ T0547 129 :I 1wyzA 138 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=59397 # 1uarA.121.101 read from T0547.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)G126 (1uarA)D107 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1uarA)R109 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNE 1uarA 102 :YNGHK T0547 127 :A 1uarA 108 :V T0547 129 :I 1uarA 110 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=59400 # 1ct5A.121.78 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 121 :AYNNE 1ct5A 80 :KLLPD T0547 128 :PI 1ct5A 87 :KW Number of specific fragments extracted= 2 number of extra gaps= 1 total=59402 # 1pe9A.121.48 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)N123 (1pe9A)G51 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1pe9A)I56 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1pe9A 49 :SA T0547 124 :NEGA 1pe9A 52 :AEAK T0547 129 :I 1pe9A 57 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=59405 # 1g60A.121.207 read from T0547.t04.many.frag # found chain 1g60A in template set Warning: unaligning (T0547)P128 (1g60A)L215 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1g60A 208 :ASSNPND T0547 129 :I 1g60A 216 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=59407 # 1vb3A.121.144 read from T0547.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)N123 (1vb3A)G147 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vb3A)K152 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1vb3A 145 :FY T0547 124 :NEGA 1vb3A 148 :LPNV T0547 129 :I 1vb3A 153 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=59410 # 1v8bA.121.251 read from T0547.t04.many.frag # found chain 1v8bA in template set Warning: unaligning (T0547)A121 (1v8bA)D252 because L (left) conformation "forbidden" or filtered. T0547 122 :YNNEGAPI 1v8bA 253 :FLISGKIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=59411 # 1ej0A.121.41 read from T0547.t04.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)N124 (1ej0A)G74 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 121 :AYN 1ej0A 71 :TQI T0547 125 :EGA 1ej0A 75 :GKG T0547 129 :I 1ej0A 79 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=59414 # 2f5xA.121.68 read from T0547.t04.many.frag # found chain 2f5xA in training set Warning: unaligning (T0547)A121 (2f5xA)R57 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (2f5xA)Q59 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2f5xA)S64 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 2f5xA 58 :A T0547 124 :NEGA 2f5xA 60 :PDGY T0547 129 :I 2f5xA 65 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=59417 # 2bzgA.121.43 read from T0547.t04.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)E125 (2bzgA)S61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2bzgA)R64 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNN 2bzgA 57 :LKGK T0547 126 :GA 2bzgA 62 :GL T0547 129 :I 2bzgA 65 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=59420 # 1c7nA.121.107 read from T0547.t04.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)Y122 (1c7nA)F109 because G (3-10) conformation "forbidden" or filtered. T0547 121 :A 1c7nA 108 :E T0547 123 :NNEGAPI 1c7nA 110 :TKPGDGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=59422 # 1r9jA.121.173 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)N123 (1r9jA)A174 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1r9jA)L178 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1r9jA)I179 because D (zeta) conformation "forbidden" or filtered. T0547 121 :AY 1r9jA 172 :HL T0547 124 :NEG 1r9jA 175 :LEK T0547 129 :I 1r9jA 180 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=59425 # 1oxxK.121.153 read from T0547.t04.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)E125 (1oxxK)D158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1oxxK)L161 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNN 1oxxK 154 :ALVK T0547 126 :GA 1oxxK 159 :PS T0547 129 :I 1oxxK 162 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=59428 # 1pswA.121.98 read from T0547.t04.many.frag # found chain 1pswA in template set Warning: unaligning (T0547)N123 (1pswA)G101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1pswA)T106 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1pswA 99 :FA T0547 124 :NEGA 1pswA 102 :IPHR T0547 129 :I 1pswA 107 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=59431 # 1v72A.121.76 read from T0547.t04.many.frag # found chain 1v72A in template set T0547 121 :AYNNEGAPI 1v72A 77 :SAMTPPWGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=59432 # 1vqoN.121.94 read from T0547.t04.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)N123 (1vqoN)G96 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1vqoN)E99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vqoN)V101 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1vqoN 94 :EA T0547 124 :NE 1vqoN 97 :VE T0547 127 :A 1vqoN 100 :A T0547 129 :I 1vqoN 102 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=59436 # 1cs1A.121.85 read from T0547.t04.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1cs1A 86 :VFLKPGD T0547 129 :I 1cs1A 94 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=59438 # 2b4vA.121.52 read from T0547.t04.many.frag # found chain 2b4vA in training set Warning: unaligning (T0547)P128 (2b4vA)K79 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 2b4vA 72 :DKWTPDA T0547 129 :I 2b4vA 80 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=59440 # 1o66A.121.72 read from T0547.t04.many.frag # found chain 1o66A in training set T0547 121 :AYNNEGAPI 1o66A 71 :ARGAKNAMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=59441 # 7odcA.122.100 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N123 (7odcA)G102 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 122 :Y 7odcA 101 :L T0547 124 :NEGA 7odcA 103 :VPAE T0547 129 :IT 7odcA 108 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=59444 # 1f1eA.122.15 read from T0547.t04.many.frag # found chain 1f1eA in training set T0547 122 :YNNEGAPIT 1f1eA 16 :QGIGERRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=59445 # 1uwcA.122.147 read from T0547.t04.many.frag # found chain 1uwcA in training set Warning: unaligning (T0547)P128 (1uwcA)R154 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNEGA 1uwcA 148 :ATYDNV T0547 129 :IT 1uwcA 155 :LY Number of specific fragments extracted= 2 number of extra gaps= 1 total=59447 # 2apjA.122.105 read from T0547.t04.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)N123 (2apjA)E107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2apjA)V112 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 2apjA 106 :L T0547 124 :NEGA 2apjA 108 :TDSA T0547 129 :IT 2apjA 113 :IG Number of specific fragments extracted= 3 number of extra gaps= 2 total=59450 # 1wzuA.122.45 read from T0547.t04.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)N123 (1wzuA)R47 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1wzuA)V48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 1wzuA 46 :T T0547 125 :EGA 1wzuA 49 :DAD T0547 129 :IT 1wzuA 53 :IV Number of specific fragments extracted= 3 number of extra gaps= 2 total=59453 # 1zjcA.122.52 read from T0547.t04.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)N123 (1zjcA)G51 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zjcA)R56 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 1zjcA 50 :C T0547 124 :NEGA 1zjcA 52 :ASDV T0547 129 :IT 1zjcA 57 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=59456 # 1vjoA.122.104 read from T0547.t04.many.frag # found chain 1vjoA in training set Warning: unaligning (T0547)E125 (1vjoA)P96 because P (beta_P) conformation "forbidden" or filtered. T0547 122 :YNN 1vjoA 93 :AVE T0547 126 :GAPIT 1vjoA 97 :GDVVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59458 # 1v8bA.122.252 read from T0547.t04.many.frag # found chain 1v8bA in template set T0547 122 :YNNEGAPIT 1v8bA 253 :FLISGKIVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=59459 # 1g60A.122.208 read from T0547.t04.many.frag # found chain 1g60A in template set Warning: unaligning (T0547)Y122 (1g60A)S209 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (1g60A)S210 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1g60A)N211 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1g60A)L215 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 1g60A 212 :PND T0547 129 :IT 1g60A 216 :VL Number of specific fragments extracted= 2 number of extra gaps= 2 total=59461 # 1c7nA.122.108 read from T0547.t04.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)N123 (1c7nA)T110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1c7nA)K111 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 1c7nA 109 :F T0547 125 :EGAPIT 1c7nA 112 :PGDGVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=59463 # 2b0cA.122.160 read from T0547.t04.many.frag # found chain 2b0cA in template set Warning: unaligning (T0547)P128 (2b0cA)D167 because G (3-10) conformation "forbidden" or filtered. T0547 122 :YNNEGA 2b0cA 161 :EGFSPS T0547 129 :IT 2b0cA 168 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=59465 # 2az4A.122.248 read from T0547.t04.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. T0547 122 :YNNEG 2az4A 249 :LENPN T0547 128 :PIT 2az4A 255 :QIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=59467 # 2bzgA.122.44 read from T0547.t04.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)P128 (2bzgA)R64 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNEGA 2bzgA 58 :KGKSGL T0547 129 :IT 2bzgA 65 :VF Number of specific fragments extracted= 2 number of extra gaps= 1 total=59469 # 1ct5A.122.79 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)N124 (1ct5A)P83 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 122 :YN 1ct5A 81 :LL T0547 125 :E 1ct5A 84 :D T0547 128 :PIT 1ct5A 87 :KWH Number of specific fragments extracted= 3 number of extra gaps= 2 total=59472 # 1ej0A.122.42 read from T0547.t04.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)G126 (1ej0A)K76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 122 :YNNE 1ej0A 72 :QIGG T0547 127 :A 1ej0A 77 :G T0547 129 :IT 1ej0A 79 :II Number of specific fragments extracted= 3 number of extra gaps= 2 total=59475 # 1cs1A.122.86 read from T0547.t04.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)N123 (1cs1A)L88 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 1cs1A 87 :F T0547 124 :NEGA 1cs1A 89 :KPGD T0547 129 :IT 1cs1A 94 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=59478 # 2f5xA.122.69 read from T0547.t04.many.frag # found chain 2f5xA in training set Warning: unaligning (T0547)P128 (2f5xA)S64 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNEGA 2f5xA 58 :AQPDGY T0547 129 :IT 2f5xA 65 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59480 # 1o66A.122.73 read from T0547.t04.many.frag # found chain 1o66A in training set Warning: unaligning (T0547)N124 (1o66A)A74 because P (beta_P) conformation "forbidden" or filtered. T0547 122 :YN 1o66A 72 :RG T0547 125 :EGAPIT 1o66A 75 :KNAMIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=59482 # 1uarA.122.102 read from T0547.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)N123 (1uarA)G104 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1uarA)D107 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1uarA)R109 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 1uarA 103 :N T0547 124 :NE 1uarA 105 :HK T0547 127 :A 1uarA 108 :V T0547 129 :IT 1uarA 110 :LM Number of specific fragments extracted= 4 number of extra gaps= 3 total=59486 # 1vb3A.122.145 read from T0547.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)N123 (1vb3A)G147 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1vb3A)N150 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vb3A)K152 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 1vb3A 146 :Y T0547 124 :NE 1vb3A 148 :LP T0547 127 :A 1vb3A 151 :V T0547 129 :IT 1vb3A 153 :VV Number of specific fragments extracted= 4 number of extra gaps= 3 total=59490 # 1rcqA.122.68 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N123 (1rcqA)G70 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1rcqA)I71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1rcqA)Q73 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1rcqA)I75 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 1rcqA 69 :A T0547 125 :E 1rcqA 72 :R T0547 127 :A 1rcqA 74 :P T0547 129 :IT 1rcqA 76 :LL Number of specific fragments extracted= 4 number of extra gaps= 3 total=59494 # 1pe9A.122.49 read from T0547.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)G126 (1pe9A)A54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1pe9A)I56 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNE 1pe9A 50 :AGAE T0547 127 :A 1pe9A 55 :K T0547 129 :IT 1pe9A 57 :IQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=59497 # 1r9jA.122.174 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)Y122 (1r9jA)L173 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1r9jA)K177 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1r9jA)L178 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1r9jA)I179 because D (zeta) conformation "forbidden" or filtered. T0547 123 :NNE 1r9jA 174 :ALE T0547 129 :IT 1r9jA 180 :VI Number of specific fragments extracted= 2 number of extra gaps= 2 total=59499 # 1wyzA.122.130 read from T0547.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0547)N123 (1wyzA)G132 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1wyzA)F133 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1wyzA)N134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wyzA)S137 because D (zeta) conformation "forbidden" or filtered. T0547 122 :Y 1wyzA 131 :S T0547 126 :GA 1wyzA 135 :GQ T0547 129 :IT 1wyzA 138 :FA Number of specific fragments extracted= 3 number of extra gaps= 2 total=59502 # 1nw3A.122.151 read from T0547.t04.many.frag # found chain 1nw3A in template set Warning: unaligning (T0547)N124 (1nw3A)T154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1nw3A)L158 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YN 1nw3A 152 :KM T0547 125 :EGA 1nw3A 155 :DDD T0547 129 :IT 1nw3A 159 :FV Number of specific fragments extracted= 3 number of extra gaps= 2 total=59505 # 1n2sA.122.91 read from T0547.t04.many.frag # found chain 1n2sA in template set Warning: unaligning (T0547)A127 (1n2sA)A97 because P (beta_P) conformation "forbidden" or filtered. T0547 122 :YNNEG 1n2sA 92 :ANETG T0547 128 :PIT 1n2sA 98 :WVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=59507 # 2b9eA.122.96 read from T0547.t04.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)Y122 (2b9eA)D223 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (2b9eA)P224 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2b9eA)H229 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 2b9eA 225 :PPGS T0547 129 :IT 2b9eA 230 :VI Number of specific fragments extracted= 2 number of extra gaps= 2 total=59509 # 1oxxK.122.154 read from T0547.t04.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)G126 (1oxxK)P159 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1oxxK)L161 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNE 1oxxK 155 :LVKD T0547 127 :A 1oxxK 160 :S T0547 129 :IT 1oxxK 162 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=59512 # 1nytA.122.114 read from T0547.t04.many.frag # found chain 1nytA in training set T0547 122 :YNNEGAPIT 1nytA 115 :FIRPGLRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59513 1c9kA expands to /projects/compbio/data/pdb/1c9k.pdb.gz 1c9kA:# 1c9kA.122.69 read from T0547.t04.many.frag # adding 1c9kA to template set # found chain 1c9kA in template set Warning: unaligning (T0547)P128 (1c9kA)A76 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNEGA 1c9kA 70 :DLAPDD T0547 129 :IT 1c9kA 77 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59515 # 1v8bA.123.253 read from T0547.t04.many.frag # found chain 1v8bA in template set T0547 123 :NNEGAPITV 1v8bA 254 :LISGKIVVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=59516 # 2apjA.123.106 read from T0547.t04.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)N123 (2apjA)E107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2apjA)V112 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 2apjA 108 :TDSA T0547 129 :ITV 2apjA 113 :IGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=59518 # 1vjoA.123.105 read from T0547.t04.many.frag # found chain 1vjoA in training set T0547 123 :NNEGAPITV 1vjoA 94 :VEPGDVVLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=59519 # 1cs1A.123.87 read from T0547.t04.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)E125 (1cs1A)P90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NN 1cs1A 88 :LK T0547 126 :GA 1cs1A 91 :GD T0547 129 :ITV 1cs1A 94 :LVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=59522 # 1g60A.123.209 read from T0547.t04.many.frag # found chain 1g60A in template set Warning: unaligning (T0547)N123 (1g60A)S210 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1g60A)D214 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1g60A)L215 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEG 1g60A 211 :NPN T0547 129 :ITV 1g60A 216 :VLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=59524 # 2bzgA.123.45 read from T0547.t04.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)N123 (2bzgA)G59 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (2bzgA)S61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2bzgA)R64 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :N 2bzgA 60 :K T0547 126 :GA 2bzgA 62 :GL T0547 129 :ITV 2bzgA 65 :VFF Number of specific fragments extracted= 3 number of extra gaps= 3 total=59527 # 1c7nA.123.109 read from T0547.t04.many.frag # found chain 1c7nA in template set T0547 123 :NNEGAPITV 1c7nA 110 :TKPGDGVII Number of specific fragments extracted= 1 number of extra gaps= 0 total=59528 # 1wzuA.123.46 read from T0547.t04.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 1wzuA 47 :RVDAD T0547 129 :ITV 1wzuA 53 :IVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=59530 # 1ej0A.123.43 read from T0547.t04.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)N124 (1ej0A)G74 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1ej0A)K76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 123 :N 1ej0A 73 :I T0547 125 :E 1ej0A 75 :G T0547 127 :A 1ej0A 77 :G T0547 129 :ITV 1ej0A 79 :IIA Number of specific fragments extracted= 4 number of extra gaps= 3 total=59534 # 1n2sA.123.92 read from T0547.t04.many.frag # found chain 1n2sA in template set Warning: unaligning (T0547)A127 (1n2sA)A97 because P (beta_P) conformation "forbidden" or filtered. T0547 123 :NNEG 1n2sA 93 :NETG T0547 128 :PITV 1n2sA 98 :WVVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=59536 # 2az4A.123.249 read from T0547.t04.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V131 (2az4A)F258 because Y (epsilon') conformation "forbidden" or filtered. T0547 123 :NNEG 2az4A 250 :ENPN T0547 128 :PIT 2az4A 255 :QIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=59538 # 7odcA.123.101 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N124 (7odcA)V103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 123 :N 7odcA 102 :G T0547 125 :EGA 7odcA 104 :PAE T0547 129 :ITV 7odcA 108 :VIY Number of specific fragments extracted= 3 number of extra gaps= 2 total=59541 # 1nw3A.123.152 read from T0547.t04.many.frag # found chain 1nw3A in template set Warning: unaligning (T0547)P128 (1nw3A)L158 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 1nw3A 153 :MTDDD T0547 129 :ITV 1nw3A 159 :FVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=59543 # 1uwcA.123.148 read from T0547.t04.many.frag # found chain 1uwcA in training set Warning: unaligning (T0547)E125 (1uwcA)D151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1uwcA)R154 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NN 1uwcA 149 :TY T0547 126 :GA 1uwcA 152 :NV T0547 129 :ITV 1uwcA 155 :LYT Number of specific fragments extracted= 3 number of extra gaps= 2 total=59546 # 1nytA.123.115 read from T0547.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)N124 (1nytA)R117 because Y (epsilon') conformation "forbidden" or filtered. T0547 123 :N 1nytA 116 :I T0547 125 :EGAPITV 1nytA 118 :PGLRILL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59548 # 1o66A.123.74 read from T0547.t04.many.frag # found chain 1o66A in training set Warning: unaligning (T0547)A127 (1o66A)A77 because P (beta_P) conformation "forbidden" or filtered. T0547 123 :NNEG 1o66A 73 :GAKN T0547 128 :PITV 1o66A 78 :MIVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=59550 # 1c9kA.123.70 read from T0547.t04.many.frag # found chain 1c9kA in template set Warning: unaligning (T0547)P128 (1c9kA)A76 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 1c9kA 71 :LAPDD T0547 129 :ITV 1c9kA 77 :ILL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59552 # 1ne2A.123.48 read from T0547.t04.many.frag # found chain 1ne2A in training set T0547 123 :NNEGAPITV 1ne2A 46 :NIGGRSVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=59553 # 1vk9A.123.59 read from T0547.t04.many.frag # found chain 1vk9A in template set Warning: unaligning (T0547)E125 (1vk9A)E50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vk9A)L53 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NN 1vk9A 48 :NL T0547 126 :GA 1vk9A 51 :GS T0547 129 :ITV 1vk9A 54 :VID Number of specific fragments extracted= 3 number of extra gaps= 2 total=59556 # 1n8kA.123.188 read from T0547.t04.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)E125 (1n8kA)Q191 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1n8kA)T194 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NN 1n8kA 189 :VT T0547 126 :GA 1n8kA 192 :GS T0547 129 :ITV 1n8kA 195 :CAV Number of specific fragments extracted= 3 number of extra gaps= 2 total=59559 # 1qsgA.123.5 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. T0547 123 :NNEGA 1qsgA 3 :FLSGK T0547 129 :ITV 1qsgA 9 :ILV Number of specific fragments extracted= 2 number of extra gaps= 1 total=59561 # 1id1A.123.0 read from T0547.t04.many.frag # found chain 1id1A in template set Warning: unaligning (T0547)N123 because first residue in template chain is (1id1A)H3 Warning: unaligning (T0547)N124 (1id1A)R4 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1id1A)F8 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 1id1A 5 :KDH T0547 129 :ITV 1id1A 9 :IVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=59563 # 1kyqA.123.9 read from T0547.t04.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)N124 (1kyqA)L11 because G (3-10) conformation "forbidden" or filtered. T0547 123 :N 1kyqA 10 :Q T0547 125 :EGAPITV 1kyqA 12 :KDKRILL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59565 # 1vp4A.123.129 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)G126 (1vp4A)E121 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vp4A)Y123 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNE 1vp4A 118 :LDD T0547 127 :A 1vp4A 122 :S T0547 129 :ITV 1vp4A 124 :CVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=59568 # 2nacA.123.187 read from T0547.t04.many.frag # found chain 2nacA in template set T0547 123 :NNEGAPITV 2nacA 188 :DLEAMHVGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=59569 # 1ct5A.123.80 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 123 :NNE 1ct5A 82 :LPD T0547 128 :PITV 1ct5A 87 :KWHF Number of specific fragments extracted= 2 number of extra gaps= 1 total=59571 # 1y1pA.123.7 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 123 :NNEGAPITV 1y1pA 9 :LPEGSLVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=59572 # 1vq2A.123.118 read from T0547.t04.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)P128 (1vq2A)T124 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 1vq2A 119 :SIEGA T0547 129 :ITV 1vq2A 125 :MYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=59574 # 2b9eA.123.97 read from T0547.t04.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)P128 (2b9eA)H229 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 2b9eA 224 :PPPGS T0547 129 :ITV 2b9eA 230 :VID Number of specific fragments extracted= 2 number of extra gaps= 1 total=59576 # 1zk4A.123.2 read from T0547.t04.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)P128 (1zk4A)V8 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 1zk4A 3 :RLDGK T0547 129 :ITV 1zk4A 9 :AII Number of specific fragments extracted= 2 number of extra gaps= 1 total=59578 # 1wzuA.124.47 read from T0547.t04.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)N124 (1wzuA)V48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1wzuA)D49 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1wzuA 50 :AD T0547 129 :ITVN 1wzuA 53 :IVFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=59580 # 1id1A.124.1 read from T0547.t04.many.frag # found chain 1id1A in template set Warning: unaligning (T0547)N124 (1id1A)R4 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1id1A)F8 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1id1A)G12 because S (epsilon) conformation "forbidden" or filtered. T0547 125 :EGA 1id1A 5 :KDH T0547 129 :ITV 1id1A 9 :IVC Number of specific fragments extracted= 2 number of extra gaps= 3 total=59582 # 2az4A.124.250 read from T0547.t04.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)N124 (2az4A)N251 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (2az4A)N253 because D (zeta) conformation "forbidden" or filtered. T0547 125 :E 2az4A 252 :P T0547 127 :APITVN 2az4A 254 :RQITFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=59584 # 1ne2A.124.49 read from T0547.t04.many.frag # found chain 1ne2A in training set T0547 124 :NEGAPITVN 1ne2A 47 :IGGRSVIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59585 # 1cs1A.124.88 read from T0547.t04.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1cs1A)P97 because P (beta_P) conformation "forbidden" or filtered. T0547 124 :NEGA 1cs1A 89 :KPGD T0547 129 :ITV 1cs1A 94 :LVA Number of specific fragments extracted= 2 number of extra gaps= 2 total=59587 # 1v8bA.124.254 read from T0547.t04.many.frag # found chain 1v8bA in template set T0547 124 :NEGAPITVN 1v8bA 255 :ISGKIVVIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=59588 # 1y1pA.124.8 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 124 :NEGAPITVN 1y1pA 10 :PEGSLVLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=59589 # 1qsgA.124.6 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1qsgA)T12 because P (beta_P) conformation "forbidden" or filtered. T0547 124 :NEGA 1qsgA 4 :LSGK T0547 129 :ITV 1qsgA 9 :ILV Number of specific fragments extracted= 2 number of extra gaps= 2 total=59591 # 1nytA.124.116 read from T0547.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)N124 (1nytA)R117 because Y (epsilon') conformation "forbidden" or filtered. T0547 125 :EGAPITVN 1nytA 118 :PGLRILLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=59592 # 7odcA.124.102 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 124 :NEGA 7odcA 103 :VPAE T0547 129 :ITVN 7odcA 108 :VIYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=59594 # 1ej0A.124.44 read from T0547.t04.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)G126 (1ej0A)K76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 124 :NE 1ej0A 74 :GG T0547 127 :A 1ej0A 77 :G T0547 129 :ITVN 1ej0A 79 :IIAC Number of specific fragments extracted= 3 number of extra gaps= 2 total=59597 # 1y5mA.124.15 read from T0547.t04.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)N132 (1y5mA)T40 because P (beta_P) conformation "forbidden" or filtered. T0547 124 :NEGAPITV 1y5mA 32 :LQGKKVIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=59598 # 1c7nA.124.110 read from T0547.t04.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)N132 (1c7nA)I119 because P (beta_P) conformation "forbidden" or filtered. T0547 124 :NEGAPITV 1c7nA 111 :KPGDGVII Number of specific fragments extracted= 1 number of extra gaps= 1 total=59599 # 1uwkA.124.164 read from T0547.t04.many.frag # found chain 1uwkA in training set Warning: unaligning (T0547)P128 (1uwkA)W169 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 1uwkA 165 :LKGK T0547 129 :ITVN 1uwkA 170 :VLTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=59601 # 1o66A.124.75 read from T0547.t04.many.frag # found chain 1o66A in training set Warning: unaligning (T0547)N132 (1o66A)D82 because P (beta_P) conformation "forbidden" or filtered. T0547 124 :NEGAPITV 1o66A 74 :AKNAMIVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=59602 # 1c9kA.124.71 read from T0547.t04.many.frag # found chain 1c9kA in template set Warning: unaligning (T0547)P128 (1c9kA)A76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE in next template residue (1c9kA)C81 T0547 124 :NEGA 1c9kA 72 :APDD T0547 129 :ITV 1c9kA 77 :ILL Number of specific fragments extracted= 2 number of extra gaps= 2 total=59604 # 1p4cA.124.121 read from T0547.t04.many.frag # found chain 1p4cA in training set Warning: unaligning (T0547)A127 (1p4cA)D125 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1p4cA)L126 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEG 1p4cA 122 :CDG T0547 129 :ITVN 1p4cA 127 :WFQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59606 # 1rkxA.124.6 read from T0547.t04.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)E125 (1rkxA)Q8 because P (beta_P) conformation "forbidden" or filtered. T0547 124 :N 1rkxA 7 :W T0547 126 :GAPITVN 1rkxA 9 :GKRVFVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=59608 # 1oxxK.124.156 read from T0547.t04.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)G126 (1oxxK)P159 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1oxxK)L161 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NE 1oxxK 157 :KD T0547 127 :A 1oxxK 160 :S T0547 129 :ITVN 1oxxK 162 :LLLD Number of specific fragments extracted= 3 number of extra gaps= 2 total=59611 # 2f62A.124.6 read from T0547.t04.many.frag # found chain 2f62A in training set Warning: unaligning (T0547)P128 (2f62A)K11 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 2f62A 7 :HHMR T0547 129 :ITVN 2f62A 12 :IYIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=59613 # 1vk9A.124.60 read from T0547.t04.many.frag # found chain 1vk9A in template set Warning: unaligning (T0547)P128 (1vk9A)L53 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 1vk9A 49 :LEGS T0547 129 :ITVN 1vk9A 54 :VIDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=59615 # 2etjA.124.110 read from T0547.t04.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)P128 (2etjA)F103 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (2etjA)D107 because P (beta_P) conformation "forbidden" or filtered. T0547 124 :NEGA 2etjA 99 :VKPS T0547 129 :ITV 2etjA 104 :VLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=59617 # 2bzgA.124.46 read from T0547.t04.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)P128 (2bzgA)R64 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 2bzgA 60 :KSGL T0547 129 :ITVN 2bzgA 65 :VFFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=59619 # 1g60A.124.210 read from T0547.t04.many.frag # found chain 1g60A in template set Warning: unaligning (T0547)P128 (1g60A)L215 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 1g60A 211 :NPND T0547 129 :ITVN 1g60A 216 :VLDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=59621 # 1efdN.124.2 read from T0547.t04.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)P128 (1efdN)R37 because G (3-10) conformation "forbidden" or filtered. T0547 124 :NEGA 1efdN 33 :IDPN T0547 129 :ITVN 1efdN 38 :IVAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59623 # 1vp4A.124.130 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)N124 (1vp4A)D119 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1vp4A)E121 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vp4A)Y123 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vp4A)D128 T0547 125 :E 1vp4A 120 :D T0547 127 :A 1vp4A 122 :S T0547 129 :ITV 1vp4A 124 :CVL Number of specific fragments extracted= 3 number of extra gaps= 4 total=59626 # 1t2dA.124.1 read from T0547.t04.many.frag # found chain 1t2dA in training set Warning: unaligning (T0547)N124 because first residue in template chain is (1t2dA)A1 Warning: unaligning (T0547)E125 (1t2dA)P2 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1t2dA)K5 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1t2dA 3 :KA T0547 129 :ITVN 1t2dA 6 :IVLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=59628 # 1kyqA.124.10 read from T0547.t04.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)E125 (1kyqA)K12 because P (beta_P) conformation "forbidden" or filtered. T0547 124 :N 1kyqA 11 :L T0547 126 :GAPITVN 1kyqA 13 :DKRILLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=59630 # 1v77A.124.73 read from T0547.t04.many.frag # found chain 1v77A in training set Warning: unaligning (T0547)A127 (1v77A)Y77 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEG 1v77A 74 :FKS T0547 128 :PITVN 1v77A 78 :LIYVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=59632 # 1nw3A.124.153 read from T0547.t04.many.frag # found chain 1nw3A in template set Warning: unaligning (T0547)P128 (1nw3A)L158 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 1nw3A 154 :TDDD T0547 129 :ITVN 1nw3A 159 :FVDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59634 # 1qsgA.125.7 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. T0547 125 :EGA 1qsgA 5 :SGK T0547 129 :ITVNG 1qsgA 9 :ILVTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=59636 # 7odcA.125.103 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 125 :EGA 7odcA 104 :PAE T0547 129 :ITVNG 7odcA 108 :VIYAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=59638 # 1y5mA.125.16 read from T0547.t04.many.frag # found chain 1y5mA in template set T0547 125 :EGAPITVNG 1y5mA 33 :QGKKVIVTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59639 # 1wzuA.125.48 read from T0547.t04.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)G126 (1wzuA)A50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :E 1wzuA 49 :D T0547 127 :A 1wzuA 51 :D T0547 129 :ITVNG 1wzuA 53 :IVFAG Number of specific fragments extracted= 3 number of extra gaps= 2 total=59642 # 2az4A.125.251 read from T0547.t04.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)G126 (2az4A)N253 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V131 (2az4A)F258 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (2az4A)N259 because Y (epsilon') conformation "forbidden" or filtered. T0547 125 :E 2az4A 252 :P T0547 128 :PIT 2az4A 255 :QIT T0547 133 :G 2az4A 260 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=59645 # 1nytA.125.117 read from T0547.t04.many.frag # found chain 1nytA in training set T0547 125 :EGAPITVNG 1nytA 118 :PGLRILLIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59646 # 1ne2A.125.50 read from T0547.t04.many.frag # found chain 1ne2A in training set T0547 125 :EGAPITVNG 1ne2A 48 :GGRSVIDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59647 # 1y1pA.125.9 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 125 :EGAPITVNG 1y1pA 11 :EGSLVLVTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59648 # 1v8bA.125.255 read from T0547.t04.many.frag # found chain 1v8bA in template set T0547 125 :EGAPITVNG 1v8bA 256 :SGKIVVICG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59649 # 1ej0A.125.45 read from T0547.t04.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)G126 (1ej0A)K76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 125 :E 1ej0A 75 :G T0547 127 :A 1ej0A 77 :G T0547 129 :ITVNG 1ej0A 79 :IIACD Number of specific fragments extracted= 3 number of extra gaps= 2 total=59652 # 1id1A.125.2 read from T0547.t04.many.frag # found chain 1id1A in template set Warning: unaligning (T0547)A127 (1id1A)H7 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1id1A)F8 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1id1A)G12 because S (epsilon) conformation "forbidden" or filtered. T0547 125 :EG 1id1A 5 :KD T0547 129 :ITV 1id1A 9 :IVC T0547 133 :G 1id1A 13 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=59655 # 1rkxA.125.7 read from T0547.t04.many.frag # found chain 1rkxA in template set T0547 125 :EGAPITVNG 1rkxA 8 :QGKRVFVTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59656 # 1o66A.125.76 read from T0547.t04.many.frag # found chain 1o66A in training set Warning: unaligning (T0547)N132 (1o66A)D82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1o66A)L83 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGAPITV 1o66A 75 :KNAMIVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=59657 # 2etjA.125.111 read from T0547.t04.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)G126 (2etjA)P101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2etjA)F103 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :E 2etjA 100 :K T0547 127 :A 2etjA 102 :S T0547 129 :ITVNG 2etjA 104 :VLVDG Number of specific fragments extracted= 3 number of extra gaps= 2 total=59660 # 1t2dA.125.2 read from T0547.t04.many.frag # found chain 1t2dA in training set Warning: unaligning (T0547)E125 (1t2dA)P2 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1t2dA)K5 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1t2dA 3 :KA T0547 129 :ITVNG 1t2dA 6 :IVLVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=59662 # 2fnuA.125.72 read from T0547.t04.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)P128 (2fnuA)E76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (2fnuA)T80 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGA 2fnuA 73 :DRN T0547 129 :ITV 2fnuA 77 :IIT T0547 133 :G 2fnuA 81 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=59665 # 1uwkA.125.165 read from T0547.t04.many.frag # found chain 1uwkA in training set Warning: unaligning (T0547)P128 (1uwkA)W169 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 1uwkA 166 :KGK T0547 129 :ITVNG 1uwkA 170 :VLTAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=59667 # 2f62A.125.7 read from T0547.t04.many.frag # found chain 2f62A in training set Warning: unaligning (T0547)P128 (2f62A)K11 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 2f62A 8 :HMR T0547 129 :ITVNG 2f62A 12 :IYIAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=59669 # 1lqtA.125.145 read from T0547.t04.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)P128 (1lqtA)R149 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 1lqtA 146 :SGA T0547 129 :ITVNG 1lqtA 150 :AVVIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=59671 # 1nt2A.125.56 read from T0547.t04.many.frag # found chain 1nt2A in template set T0547 125 :EGAPITVNG 1nt2A 57 :GDERVLYLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59672 # 1esc.125.93 read from T0547.t04.many.frag # found chain 1esc in template set Warning: unaligning (T0547)P128 (1esc)Q97 because G (3-10) conformation "forbidden" or filtered. T0547 125 :EGA 1esc 94 :QDT T0547 129 :ITVNG 1esc 98 :LTVGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=59674 # 1c1dA.125.173 read from T0547.t04.many.frag # found chain 1c1dA in training set T0547 125 :EGAPITVNG 1c1dA 174 :DGLTVLVQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59675 # 1drw.125.3 read from T0547.t04.many.frag # found chain 1drw in template set Warning: unaligning (T0547)E125 (1drw)A4 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1drw)I6 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1drw)R7 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :G 1drw 5 :N T0547 129 :ITVNG 1drw 8 :VAIAG Number of specific fragments extracted= 2 number of extra gaps= 2 total=59677 # 1v77A.125.74 read from T0547.t04.many.frag # found chain 1v77A in training set T0547 125 :EGAPITVNG 1v77A 75 :KSYLIYVES Number of specific fragments extracted= 1 number of extra gaps= 0 total=59678 # 1c7nA.125.111 read from T0547.t04.many.frag # found chain 1c7nA in template set T0547 125 :EGAPITVNG 1c7nA 112 :PGDGVIIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=59679 # 1pmmA.125.152 read from T0547.t04.many.frag # found chain 1pmmA in template set Warning: unaligning (T0547)P128 (1pmmA)N156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1pmmA)G160 because Y (epsilon') conformation "forbidden" or filtered. T0547 125 :EGA 1pmmA 153 :DKP T0547 129 :ITV 1pmmA 157 :LVC T0547 133 :G 1pmmA 161 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=59682 # 2bzgA.125.47 read from T0547.t04.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)P128 (2bzgA)R64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (2bzgA)P68 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGA 2bzgA 61 :SGL T0547 129 :ITV 2bzgA 65 :VFF T0547 133 :G 2bzgA 69 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=59685 # 1fcdA.125.0 read from T0547.t04.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)E125 because first residue in template chain is (1fcdA)A1 Warning: unaligning (T0547)G126 (1fcdA)G2 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1fcdA)K4 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1fcdA 3 :R T0547 129 :ITVNG 1fcdA 5 :VVVVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=59687 # 1cs1A.125.89 read from T0547.t04.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)E125 (1cs1A)P90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1cs1A 91 :GD T0547 129 :ITVNG 1cs1A 94 :LVAPH Number of specific fragments extracted= 2 number of extra gaps= 2 total=59689 # 1yzyA.125.244 read from T0547.t04.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)P128 (1yzyA)T247 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1yzyA)G252 because G (3-10) conformation "forbidden" or filtered. T0547 125 :EGA 1yzyA 244 :KGK T0547 129 :ITVN 1yzyA 248 :VVLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=59691 # 7odcA.126.104 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 126 :GA 7odcA 105 :AE T0547 129 :ITVNGF 7odcA 108 :VIYANP Number of specific fragments extracted= 2 number of extra gaps= 1 total=59693 # 1qsgA.126.8 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. T0547 126 :GA 1qsgA 6 :GK T0547 129 :ITVNGF 1qsgA 9 :ILVTGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=59695 # 1y5mA.126.17 read from T0547.t04.many.frag # found chain 1y5mA in template set T0547 126 :GAPITVNGF 1y5mA 34 :GKKVIVTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59696 # 2az4A.126.252 read from T0547.t04.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (2az4A)N259 because Y (epsilon') conformation "forbidden" or filtered. T0547 126 :G 2az4A 253 :N T0547 128 :PITV 2az4A 255 :QITF T0547 133 :GF 2az4A 260 :GY Number of specific fragments extracted= 3 number of extra gaps= 2 total=59699 # 1wzuA.126.49 read from T0547.t04.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1wzuA)G57 because Y (epsilon') conformation "forbidden" or filtered. T0547 126 :GA 1wzuA 50 :AD T0547 129 :ITVN 1wzuA 53 :IVFA T0547 134 :F 1wzuA 58 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=59702 # 1y1pA.126.10 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 126 :GAPITVNGF 1y1pA 12 :GSLVLVTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59703 # 1ne2A.126.51 read from T0547.t04.many.frag # found chain 1ne2A in training set T0547 126 :GAPITVNGF 1ne2A 49 :GRSVIDAGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=59704 # 1v8bA.126.256 read from T0547.t04.many.frag # found chain 1v8bA in template set T0547 126 :GAPITVNGF 1v8bA 257 :GKIVVICGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=59705 # 1nytA.126.118 read from T0547.t04.many.frag # found chain 1nytA in training set T0547 126 :GAPITVNGF 1nytA 119 :GLRILLIGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59706 # 1id1A.126.3 read from T0547.t04.many.frag # found chain 1id1A in template set Warning: unaligning (T0547)P128 (1id1A)F8 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1id1A)H13 because G (3-10) conformation "forbidden" or filtered. T0547 126 :GA 1id1A 6 :DH T0547 129 :ITVN 1id1A 9 :IVCG T0547 134 :F 1id1A 14 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=59709 # 1ej0A.126.46 read from T0547.t04.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)A127 (1ej0A)G77 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 126 :G 1ej0A 76 :K T0547 129 :ITVNGF 1ej0A 79 :IIACDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59711 # 1rkxA.126.8 read from T0547.t04.many.frag # found chain 1rkxA in template set T0547 126 :GAPITVNGF 1rkxA 9 :GKRVFVTGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=59712 # 1t2dA.126.3 read from T0547.t04.many.frag # found chain 1t2dA in training set Warning: unaligning (T0547)G126 (1t2dA)K3 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1t2dA)K5 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1t2dA 4 :A T0547 129 :ITVNGF 1t2dA 6 :IVLVGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=59714 # 2fnuA.126.73 read from T0547.t04.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)G126 (2fnuA)R74 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2fnuA)E76 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 2fnuA 75 :N T0547 129 :ITVNGF 2fnuA 77 :IITTPI Number of specific fragments extracted= 2 number of extra gaps= 2 total=59716 # 1nt2A.126.57 read from T0547.t04.many.frag # found chain 1nt2A in template set Warning: unaligning (T0547)G126 (1nt2A)D58 because N (gamma') conformation "forbidden" or filtered. T0547 127 :APITVNGF 1nt2A 59 :ERVLYLGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=59717 # 1uwkA.126.166 read from T0547.t04.many.frag # found chain 1uwkA in training set Warning: unaligning (T0547)P128 (1uwkA)W169 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1uwkA 167 :GK T0547 129 :ITVNGF 1uwkA 170 :VLTAGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59719 # 1c1dA.126.174 read from T0547.t04.many.frag # found chain 1c1dA in training set Warning: unaligning (T0547)F134 (1c1dA)L183 because G (3-10) conformation "forbidden" or filtered. T0547 126 :GAPITVNG 1c1dA 175 :GLTVLVQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=59720 # 2etjA.126.112 read from T0547.t04.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)P128 (2etjA)F103 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 2etjA 101 :PS T0547 129 :ITVNGF 2etjA 104 :VLVDGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=59722 # 1lqtA.126.146 read from T0547.t04.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)G126 (1lqtA)G147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1lqtA)R149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1lqtA)G154 because S (epsilon) conformation "forbidden" or filtered. T0547 127 :A 1lqtA 148 :A T0547 129 :ITVN 1lqtA 150 :AVVI T0547 134 :F 1lqtA 155 :N Number of specific fragments extracted= 3 number of extra gaps= 3 total=59725 # 1drw.126.4 read from T0547.t04.many.frag # found chain 1drw in template set Warning: unaligning (T0547)P128 (1drw)R7 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1drw 5 :NI T0547 129 :ITVNGF 1drw 8 :VAIAGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=59727 # 1pmmA.126.153 read from T0547.t04.many.frag # found chain 1pmmA in template set Warning: unaligning (T0547)P128 (1pmmA)N156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1pmmA)G160 because Y (epsilon') conformation "forbidden" or filtered. T0547 126 :GA 1pmmA 154 :KP T0547 129 :ITV 1pmmA 157 :LVC T0547 133 :GF 1pmmA 161 :PV Number of specific fragments extracted= 3 number of extra gaps= 2 total=59730 # 1knwA.126.94 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G126 (1knwA)D95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1knwA)I97 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1knwA 96 :D T0547 129 :ITVNGF 1knwA 98 :VFTADV Number of specific fragments extracted= 2 number of extra gaps= 2 total=59732 # 1kjqA.126.10 read from T0547.t04.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)G126 (1kjqA)A12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1kjqA)T13 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1kjqA)R14 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1kjqA 15 :VMLLGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=59733 # 1o66A.126.77 read from T0547.t04.many.frag # found chain 1o66A in training set Warning: unaligning (T0547)G133 (1o66A)L83 because P (beta_P) conformation "forbidden" or filtered. T0547 126 :GAPITVN 1o66A 76 :NAMIVSD T0547 134 :F 1o66A 84 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=59735 # 1ooyA.126.16 read from T0547.t04.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A127 (1ooyA)A18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1ooyA)G23 because P (beta_P) conformation "forbidden" or filtered. T0547 126 :G 1ooyA 17 :G T0547 128 :PITV 1ooyA 19 :TVLV T0547 133 :GF 1ooyA 24 :GF Number of specific fragments extracted= 3 number of extra gaps= 2 total=59738 # 1v4vA.126.4 read from T0547.t04.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)P128 (1v4vA)R7 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1v4vA 5 :MK T0547 129 :ITVNGF 1v4vA 8 :VVLAFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=59740 # 1fcdA.126.1 read from T0547.t04.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)P128 (1fcdA)K4 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1fcdA 2 :GR T0547 129 :ITVNGF 1fcdA 5 :VVVVGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=59742 # 1ir6A.126.32 read from T0547.t04.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)G133 (1ir6A)G79 because P (beta_P) conformation "forbidden" or filtered. T0547 126 :GAPITVN 1ir6A 72 :GKRIRVH T0547 134 :F 1ir6A 80 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=59744 # 2f62A.126.8 read from T0547.t04.many.frag # found chain 2f62A in training set Warning: unaligning (T0547)P128 (2f62A)K11 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (2f62A)A15 because P (beta_P) conformation "forbidden" or filtered. T0547 126 :GA 2f62A 9 :MR T0547 129 :ITV 2f62A 12 :IYI T0547 133 :GF 2f62A 16 :GP Number of specific fragments extracted= 3 number of extra gaps= 2 total=59747 # 1cs1A.126.90 read from T0547.t04.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1cs1A 91 :GD T0547 129 :ITVNGF 1cs1A 94 :LVAPHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=59749 # 7odcA.127.105 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (7odcA)N112 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 7odcA 106 :E T0547 129 :ITVN 7odcA 108 :VIYA T0547 134 :FK 7odcA 113 :PC Number of specific fragments extracted= 3 number of extra gaps= 2 total=59752 # 1qsgA.127.9 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1qsgA)T12 because P (beta_P) conformation "forbidden" or filtered. T0547 127 :A 1qsgA 7 :K T0547 129 :ITV 1qsgA 9 :ILV T0547 133 :GFK 1qsgA 13 :GVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=59755 # 1y5mA.127.18 read from T0547.t04.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)N132 (1y5mA)T40 because P (beta_P) conformation "forbidden" or filtered. T0547 127 :APITV 1y5mA 35 :KKVIV T0547 133 :GFK 1y5mA 41 :GAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=59757 # 1y1pA.127.11 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 127 :APITVNGFK 1y1pA 13 :SLVLVTGAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=59758 # 2az4A.127.253 read from T0547.t04.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)V131 (2az4A)F258 because Y (epsilon') conformation "forbidden" or filtered. T0547 127 :APIT 2az4A 254 :RQIT T0547 132 :NGFK 2az4A 259 :NGYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=59760 # 1v8bA.127.257 read from T0547.t04.many.frag # found chain 1v8bA in template set Warning: unaligning (T0547)N132 (1v8bA)C263 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :APITV 1v8bA 258 :KIVVI T0547 133 :GFK 1v8bA 264 :GYG Number of specific fragments extracted= 2 number of extra gaps= 1 total=59762 # 1id1A.127.4 read from T0547.t04.many.frag # found chain 1id1A in template set Warning: unaligning (T0547)P128 (1id1A)F8 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1id1A)G12 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1id1A)H13 because G (3-10) conformation "forbidden" or filtered. T0547 127 :A 1id1A 7 :H T0547 129 :ITV 1id1A 9 :IVC T0547 134 :FK 1id1A 14 :SI Number of specific fragments extracted= 3 number of extra gaps= 2 total=59765 # 1pmmA.127.154 read from T0547.t04.many.frag # found chain 1pmmA in template set Warning: unaligning (T0547)A127 (1pmmA)P155 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1pmmA)N156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1pmmA)G160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1pmmA)P161 because N (gamma') conformation "forbidden" or filtered. T0547 129 :ITV 1pmmA 157 :LVC T0547 134 :FK 1pmmA 162 :VQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=59767 # 1rkxA.127.9 read from T0547.t04.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)A127 (1rkxA)K10 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1rkxA)T15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1rkxA)T18 because G (3-10) conformation "forbidden" or filtered. T0547 128 :PITV 1rkxA 11 :RVFV T0547 133 :GF 1rkxA 16 :GH Number of specific fragments extracted= 2 number of extra gaps= 3 total=59769 # 1drw.127.5 read from T0547.t04.many.frag # found chain 1drw in template set Warning: unaligning (T0547)A127 (1drw)I6 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1drw)R7 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1drw 8 :VAIAGAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=59770 # 2fnuA.127.74 read from T0547.t04.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)P128 (2fnuA)E76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (2fnuA)S83 because Y (epsilon') conformation "forbidden" or filtered. T0547 127 :A 2fnuA 75 :N T0547 129 :ITVNGF 2fnuA 77 :IITTPI Number of specific fragments extracted= 2 number of extra gaps= 2 total=59772 # 1knwA.127.95 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P128 (1knwA)I97 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1knwA 96 :D T0547 129 :ITVNGFK 1knwA 98 :VFTADVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=59774 # 1c1dA.127.175 read from T0547.t04.many.frag # found chain 1c1dA in training set T0547 127 :APITVNGFK 1c1dA 176 :LTVLVQGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59775 # 1vi6A.127.116 read from T0547.t04.many.frag # found chain 1vi6A in template set Warning: unaligning (T0547)P128 (1vi6A)V117 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1vi6A 116 :E T0547 129 :ITVNGFK 1vi6A 118 :VFVNDPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=59777 # 1nytA.127.119 read from T0547.t04.many.frag # found chain 1nytA in training set T0547 127 :APITVNGFK 1nytA 120 :LRILLIGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59778 # 1ej0A.127.47 read from T0547.t04.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1ej0A)D83 because Y (epsilon') conformation "forbidden" or filtered. T0547 127 :A 1ej0A 77 :G T0547 129 :ITVN 1ej0A 79 :IIAC T0547 134 :FK 1ej0A 84 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=59781 # 1wzuA.127.50 read from T0547.t04.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1wzuA 51 :D T0547 129 :ITVNGFK 1wzuA 53 :IVFAGVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=59783 # 1ne2A.127.52 read from T0547.t04.many.frag # found chain 1ne2A in training set Warning: unaligning (T0547)A127 (1ne2A)R50 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1ne2A)G58 because S (epsilon) conformation "forbidden" or filtered. T0547 128 :PITVNGF 1ne2A 51 :SVIDAGT Number of specific fragments extracted= 1 number of extra gaps= 2 total=59784 # 2af4C.127.16 read from T0547.t04.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)P128 (2af4C)T18 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 2af4C 17 :K T0547 129 :ITVNGFK 2af4C 19 :IALPETE Number of specific fragments extracted= 2 number of extra gaps= 1 total=59786 # 1yzyA.127.246 read from T0547.t04.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)P128 (1yzyA)T247 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1yzyA 246 :K T0547 129 :ITVNGFK 1yzyA 248 :VVLSGSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=59788 # 1nt2A.127.58 read from T0547.t04.many.frag # found chain 1nt2A in template set T0547 127 :APITVNGFK 1nt2A 59 :ERVLYLGAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59789 # 1t2dA.127.4 read from T0547.t04.many.frag # found chain 1t2dA in training set Warning: unaligning (T0547)P128 (1t2dA)K5 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1t2dA)S11 because G (3-10) conformation "forbidden" or filtered. T0547 127 :A 1t2dA 4 :A T0547 129 :ITVNG 1t2dA 6 :IVLVG T0547 135 :K 1t2dA 12 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=59792 # 1zk4A.127.6 read from T0547.t04.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)P128 (1zk4A)V8 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1zk4A 7 :K T0547 129 :ITVNGFK 1zk4A 9 :AIITGGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=59794 # 1kjqA.127.11 read from T0547.t04.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)P128 (1kjqA)R14 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1kjqA)G21 because P (beta_P) conformation "forbidden" or filtered. T0547 127 :A 1kjqA 13 :T T0547 129 :ITVNGF 1kjqA 15 :VMLLGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=59796 # 1uwkA.127.167 read from T0547.t04.many.frag # found chain 1uwkA in training set Warning: unaligning (T0547)A127 (1uwkA)K168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1uwkA)W169 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V131 (1uwkA)T172 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :IT 1uwkA 170 :VL T0547 132 :NGFK 1uwkA 173 :AGLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=59798 # 1ooyA.127.17 read from T0547.t04.many.frag # found chain 1ooyA in training set T0547 127 :APITVNGFK 1ooyA 18 :ATVLVGGFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59799 # 1z90A.127.129 read from T0547.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)P128 (1z90A)L131 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1z90A 130 :P T0547 129 :ITVNGFK 1z90A 132 :VLMNSFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=59801 # 1zzmA.127.33 read from T0547.t04.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)P128 (1zzmA)K35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1zzmA)A40 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1zzmA)E42 because Y (epsilon') conformation "forbidden" or filtered. T0547 127 :A 1zzmA 34 :G T0547 129 :ITVN 1zzmA 36 :IIVP T0547 134 :F 1zzmA 41 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=59804 # 1lqtA.127.147 read from T0547.t04.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)P128 (1lqtA)R149 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1lqtA 148 :A T0547 129 :ITVNGFK 1lqtA 150 :AVVIGNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=59806 # 1y7tA.127.4 read from T0547.t04.many.frag # found chain 1y7tA in training set T0547 127 :APITVNGFK 1y7tA 4 :VRVAVTGAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59807 # 7odcA.128.106 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 7odcA 108 :VIYANPCK Number of specific fragments extracted= 1 number of extra gaps= 1 total=59808 # 1qsgA.128.10 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1qsgA 9 :ILVTGVAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=59809 # 1y5mA.128.19 read from T0547.t04.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)N132 (1y5mA)T40 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1y5mA)K44 because Y (epsilon') conformation "forbidden" or filtered. T0547 128 :PITV 1y5mA 36 :KVIV T0547 133 :GFK 1y5mA 41 :GAS Number of specific fragments extracted= 2 number of extra gaps= 2 total=59811 # 1y1pA.128.12 read from T0547.t04.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)N132 (1y1pA)T18 because P (beta_P) conformation "forbidden" or filtered. T0547 128 :PITV 1y1pA 14 :LVLV T0547 133 :GFKD 1y1pA 19 :GANG Number of specific fragments extracted= 2 number of extra gaps= 1 total=59813 # 1c1dA.128.176 read from T0547.t04.many.frag # found chain 1c1dA in training set Warning: unaligning (T0547)K135 (1c1dA)G184 because P (beta_P) conformation "forbidden" or filtered. T0547 128 :PITVNGF 1c1dA 177 :TVLVQGL T0547 136 :D 1c1dA 185 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=59815 # 1kjqA.128.12 read from T0547.t04.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)P128 (1kjqA)R14 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1kjqA)G19 because S (epsilon) conformation "forbidden" or filtered. T0547 129 :ITVN 1kjqA 15 :VMLL T0547 134 :FKD 1kjqA 20 :SGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=59817 # 1v8bA.128.258 read from T0547.t04.many.frag # found chain 1v8bA in template set T0547 128 :PITVNGFKD 1v8bA 259 :IVVICGYGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=59818 # 1yzyA.128.247 read from T0547.t04.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)P128 (1yzyA)T247 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1yzyA 248 :VVLSGSCS Number of specific fragments extracted= 1 number of extra gaps= 1 total=59819 # 1drw.128.6 read from T0547.t04.many.frag # found chain 1drw in template set Warning: unaligning (T0547)P128 (1drw)R7 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1drw)G14 because G (3-10) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1drw 8 :VAIAGA T0547 136 :D 1drw 15 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=59821 # 1pmmA.128.155 read from T0547.t04.many.frag # found chain 1pmmA in template set Warning: unaligning (T0547)P128 (1pmmA)N156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1pmmA)G160 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITV 1pmmA 157 :LVC T0547 133 :GFKD 1pmmA 161 :PVQI Number of specific fragments extracted= 2 number of extra gaps= 2 total=59823 # 1rkxA.128.10 read from T0547.t04.many.frag # found chain 1rkxA in template set T0547 128 :PITVNGFKD 1rkxA 11 :RVFVTGHTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59824 # 1knwA.128.96 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P128 (1knwA)I97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1knwA)I104 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1knwA 98 :VFTADV T0547 136 :D 1knwA 105 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=59826 # 1v2xA.128.23 read from T0547.t04.many.frag # found chain 1v2xA in training set Warning: unaligning (T0547)P128 (1v2xA)T24 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1v2xA)K32 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1v2xA 25 :VLLENVH Number of specific fragments extracted= 1 number of extra gaps= 2 total=59827 # 1obfO.128.2 read from T0547.t04.many.frag # found chain 1obfO in template set T0547 128 :PITVNGFKD 1obfO 3 :RVAINGYGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=59828 # 2az4A.128.254 read from T0547.t04.many.frag # found chain 2az4A in template set T0547 128 :PITVNGFKD 2az4A 255 :QITFNGYPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59829 # 1z90A.128.130 read from T0547.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)P128 (1z90A)L131 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1z90A 132 :VLMNSFNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=59830 # 1zcjA.128.38 read from T0547.t04.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)P128 (1zcjA)S298 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1zcjA)L304 because G (3-10) conformation "forbidden" or filtered. T0547 129 :ITVNG 1zcjA 299 :VGVLG T0547 135 :KD 1zcjA 305 :GT Number of specific fragments extracted= 2 number of extra gaps= 2 total=59832 # 1p3dA.128.19 read from T0547.t04.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)P128 (1p3dA)Q20 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1p3dA)G28 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1p3dA 21 :IHFIGIG Number of specific fragments extracted= 1 number of extra gaps= 2 total=59833 # 2af4C.128.17 read from T0547.t04.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)P128 (2af4C)T18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (2af4C)E23 because N (gamma') conformation "forbidden" or filtered. T0547 129 :ITVN 2af4C 19 :IALP T0547 134 :FKD 2af4C 24 :TED Number of specific fragments extracted= 2 number of extra gaps= 2 total=59835 # 1nytA.128.120 read from T0547.t04.many.frag # found chain 1nytA in training set T0547 128 :PITVNGFKD 1nytA 121 :RILLIGAGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59836 # 1ks9A.128.1 read from T0547.t04.many.frag # found chain 1ks9A in training set Warning: unaligning (T0547)P128 (1ks9A)K2 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1ks9A)G9 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1ks9A 3 :ITVLGC T0547 136 :D 1ks9A 10 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=59838 # 1zk4A.128.7 read from T0547.t04.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)P128 (1zk4A)V8 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1zk4A)T12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1zk4A)T15 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 because of BadResidue code BAD_PEPTIDE in next template residue (1zk4A)G17 T0547 129 :ITV 1zk4A 9 :AII T0547 133 :GF 1zk4A 13 :GG Number of specific fragments extracted= 2 number of extra gaps= 3 total=59840 # 1lqtA.128.148 read from T0547.t04.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)P128 (1lqtA)R149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1lqtA)G154 because S (epsilon) conformation "forbidden" or filtered. T0547 129 :ITVN 1lqtA 150 :AVVI T0547 134 :FKD 1lqtA 155 :NGN Number of specific fragments extracted= 2 number of extra gaps= 2 total=59842 # 1t4bA.128.2 read from T0547.t04.many.frag # found chain 1t4bA in training set T0547 128 :PITVNGFKD 1t4bA 3 :NVGFIGWRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59843 # 1izcA.128.96 read from T0547.t04.many.frag # found chain 1izcA in training set Warning: unaligning (T0547)G133 (1izcA)V102 because P (beta_P) conformation "forbidden" or filtered. T0547 128 :PITVN 1izcA 97 :LVIVR T0547 134 :FKD 1izcA 103 :PKH Number of specific fragments extracted= 2 number of extra gaps= 1 total=59845 # 1t2dA.128.5 read from T0547.t04.many.frag # found chain 1t2dA in training set Warning: unaligning (T0547)P128 (1t2dA)K5 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1t2dA 6 :IVLVGSGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=59846 # 1ru3A.128.159 read from T0547.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)P128 (1ru3A)A160 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1ru3A)G164 because S (epsilon) conformation "forbidden" or filtered. T0547 129 :ITV 1ru3A 161 :III T0547 133 :GFKD 1ru3A 165 :RAKD Number of specific fragments extracted= 2 number of extra gaps= 2 total=59848 # 1ir6A.128.34 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 128 :PITVNGFKD 1ir6A 74 :RIRVHGDYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=59849 # 1vi6A.128.117 read from T0547.t04.many.frag # found chain 1vi6A in template set Warning: unaligning (T0547)P128 (1vi6A)V117 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1vi6A 118 :VFVNDPAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=59850 # 1zzmA.128.34 read from T0547.t04.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)P128 (1zzmA)K35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1zzmA)P39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1zzmA)A40 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1zzmA)E42 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITV 1zzmA 36 :IIV T0547 134 :F 1zzmA 41 :T T0547 136 :D 1zzmA 43 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=59853 # 1yzyA.129.248 read from T0547.t04.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)N132 (1yzyA)S251 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1yzyA)G252 because G (3-10) conformation "forbidden" or filtered. T0547 129 :ITV 1yzyA 248 :VVL T0547 134 :FKDR 1yzyA 253 :SCSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=59855 # 1obfO.129.3 read from T0547.t04.many.frag # found chain 1obfO in template set T0547 129 :ITVNGFKDR 1obfO 4 :VAINGYGRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=59856 # 7odcA.129.107 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K135 (7odcA)C114 because D (zeta) conformation "forbidden" or filtered. T0547 129 :ITVNGF 7odcA 108 :VIYANP T0547 136 :DR 7odcA 115 :KQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=59858 # 1v8bA.129.259 read from T0547.t04.many.frag # found chain 1v8bA in template set Warning: unaligning (T0547)N132 (1v8bA)C263 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITV 1v8bA 260 :VVI T0547 133 :GFKDR 1v8bA 264 :GYGDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=59860 # 1z90A.129.131 read from T0547.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)G133 (1z90A)S136 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVN 1z90A 132 :VLMN T0547 134 :FKDR 1z90A 137 :FNTH Number of specific fragments extracted= 2 number of extra gaps= 1 total=59862 # 1knwA.129.97 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N132 (1knwA)A101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1knwA)I104 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITV 1knwA 98 :VFT T0547 133 :GF 1knwA 102 :DV T0547 136 :DR 1knwA 105 :DQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=59865 # 1u9yA.129.118 read from T0547.t04.many.frag # found chain 1u9yA in template set T0547 129 :ITVNGFKDR 1u9yA 119 :LITINPHET Number of specific fragments extracted= 1 number of extra gaps= 0 total=59866 # 1c1dA.129.177 read from T0547.t04.many.frag # found chain 1c1dA in training set Warning: unaligning (T0547)K135 (1c1dA)G184 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1c1dA 178 :VLVQGL T0547 136 :DR 1c1dA 185 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=59868 # 1zcjA.129.39 read from T0547.t04.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)K135 (1zcjA)G305 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1zcjA 299 :VGVLGL T0547 136 :DR 1zcjA 306 :TM Number of specific fragments extracted= 2 number of extra gaps= 1 total=59870 # 1v2xA.129.24 read from T0547.t04.many.frag # found chain 1v2xA in training set T0547 129 :ITVNGFKDR 1v2xA 25 :VLLENVHKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=59871 # 1ks9A.129.2 read from T0547.t04.many.frag # found chain 1ks9A in training set Warning: unaligning (T0547)G133 (1ks9A)G7 because S (epsilon) conformation "forbidden" or filtered. T0547 129 :ITVN 1ks9A 3 :ITVL T0547 134 :FKDR 1ks9A 8 :CGAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59873 # 2ahrA.129.5 read from T0547.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0547)G133 (2ahrA)G7 because S (epsilon) conformation "forbidden" or filtered. T0547 129 :ITVN 2ahrA 3 :IGII T0547 134 :FKDR 2ahrA 8 :VGKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=59875 # 1l1lA.129.322 read from T0547.t04.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)N132 (1l1lA)G326 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITV 1l1lA 323 :LAL T0547 133 :GFKDR 1l1lA 327 :SNDDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=59877 # 1ru3A.129.160 read from T0547.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)D136 (1ru3A)D168 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1ru3A 161 :IIIGRAK T0547 137 :R 1ru3A 169 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=59879 # 1thfD.129.77 read from T0547.t04.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)D136 (1thfD)D85 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1thfD 78 :TVGGGIH T0547 137 :R 1thfD 86 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=59881 # 1drw.129.7 read from T0547.t04.many.frag # found chain 1drw in template set Warning: unaligning (T0547)D136 (1drw)G15 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1drw 8 :VAIAGAG T0547 137 :R 1drw 16 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=59883 # 2az4A.129.255 read from T0547.t04.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)G133 (2az4A)G260 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITVN 2az4A 256 :ITFN T0547 134 :FKDR 2az4A 261 :YPAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=59885 # 1u8xX.129.59 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 129 :ITVNGFKDR 1u8xX 37 :LKLYDNDKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=59886 # 1ir6A.129.35 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 129 :ITVNGFKDR 1ir6A 75 :IRVHGDYDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59887 # 1kjqA.129.13 read from T0547.t04.many.frag # found chain 1kjqA in training set T0547 129 :ITVNGFKDR 1kjqA 15 :VMLLGSGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59888 # 1iirA.129.2 read from T0547.t04.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)K135 (1iirA)G9 because T (delta_L) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1iirA 3 :VLLATC T0547 136 :DR 1iirA 10 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=59890 # 1rkxA.129.11 read from T0547.t04.many.frag # found chain 1rkxA in template set T0547 129 :ITVNGFKDR 1rkxA 12 :VFVTGHTGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=59891 # 2af4C.129.18 read from T0547.t04.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)G133 (2af4C)E23 because N (gamma') conformation "forbidden" or filtered. T0547 129 :ITVN 2af4C 19 :IALP T0547 134 :FKDR 2af4C 24 :TEDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=59893 # 1qsgA.129.11 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)D136 (1qsgA)S16 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1qsgA 9 :ILVTGVA T0547 137 :R 1qsgA 17 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=59895 # 1qo0D.129.14 read from T0547.t04.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)D136 (1qo0D)G22 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1qo0D 15 :VLVLNPP T0547 137 :R 1qo0D 23 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=59897 # 1xccA.129.68 read from T0547.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)S72 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)S72 Warning: unaligning (T0547)G133 (1xccA)C73 because G (3-10) conformation "forbidden" or filtered. T0547 129 :IT 1xccA 69 :IG T0547 134 :FKDR 1xccA 74 :NSKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=59899 # 1u0fA.129.151 read from T0547.t04.many.frag # found chain 1u0fA in template set T0547 129 :ITVNGFKDR 1u0fA 151 :IINIGIGGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=59900 # 1izcA.129.97 read from T0547.t04.many.frag # found chain 1izcA in training set Warning: unaligning (T0547)G133 (1izcA)V102 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVN 1izcA 98 :VIVR T0547 134 :FKDR 1izcA 103 :PKHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=59902 # 1yrbA.129.111 read from T0547.t04.many.frag # found chain 1yrbA in training set Warning: unaligning (T0547)G133 (1yrbA)T102 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVN 1yrbA 98 :VLID T0547 134 :FKDR 1yrbA 103 :PGQM Number of specific fragments extracted= 2 number of extra gaps= 1 total=59904 # 1v4vA.129.7 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 129 :ITVNGFKDR 1v4vA 8 :VVLAFGTRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=59905 # 1yzyA.130.249 read from T0547.t04.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)G133 (1yzyA)G252 because G (3-10) conformation "forbidden" or filtered. T0547 130 :TVN 1yzyA 249 :VLS T0547 134 :FKDRE 1yzyA 253 :SCSVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=59907 # 1u8xX.130.60 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)G133 (1u8xX)D41 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TVN 1u8xX 38 :KLY T0547 134 :FKDRE 1u8xX 42 :NDKER Number of specific fragments extracted= 2 number of extra gaps= 1 total=59909 # 7odcA.130.108 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G133 (7odcA)N112 because E (beta_S) conformation "forbidden" or filtered. T0547 130 :TVN 7odcA 109 :IYA T0547 134 :FKDRE 7odcA 113 :PCKQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=59911 # 1obfO.130.4 read from T0547.t04.many.frag # found chain 1obfO in template set T0547 130 :TVNGFKDRE 1obfO 5 :AINGYGRIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59912 # 1v8bA.130.260 read from T0547.t04.many.frag # found chain 1v8bA in template set T0547 130 :TVNGFKDRE 1v8bA 261 :VICGYGDVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59913 # 1u9yA.130.119 read from T0547.t04.many.frag # found chain 1u9yA in template set T0547 130 :TVNGFKDRE 1u9yA 120 :ITINPHETH Number of specific fragments extracted= 1 number of extra gaps= 0 total=59914 # 1ks9A.130.3 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 130 :TVNGFKDRE 1ks9A 4 :TVLGCGALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59915 # 2ahrA.130.6 read from T0547.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0547)G133 (2ahrA)G7 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (2ahrA)G9 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TVN 2ahrA 4 :GII T0547 134 :F 2ahrA 8 :V T0547 136 :DRE 2ahrA 10 :KMA Number of specific fragments extracted= 3 number of extra gaps= 2 total=59918 # 1zcjA.130.40 read from T0547.t04.many.frag # found chain 1zcjA in template set T0547 130 :TVNGFKDRE 1zcjA 300 :GVLGLGTMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59919 # 1xccA.130.69 read from T0547.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)S72 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)S72 Warning: unaligning (T0547)K135 (1xccA)S75 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :T 1xccA 70 :G T0547 133 :GF 1xccA 73 :CN T0547 136 :DRE 1xccA 76 :KES Number of specific fragments extracted= 3 number of extra gaps= 2 total=59922 # 1ru3A.130.161 read from T0547.t04.many.frag # found chain 1ru3A in template set T0547 130 :TVNGFKDRE 1ru3A 162 :IIGRAKDSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=59923 # 1thfD.130.78 read from T0547.t04.many.frag # found chain 1thfD in training set T0547 130 :TVNGFKDRE 1thfD 79 :VGGGIHDFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=59924 # 1v4vA.130.8 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 130 :TVNGFKDRE 1v4vA 9 :VLAFGTRPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=59925 # 1knwA.130.98 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N132 (1knwA)A101 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TV 1knwA 99 :FT T0547 133 :GFKDRE 1knwA 102 :DVIDQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=59927 # 1kjqA.130.14 read from T0547.t04.many.frag # found chain 1kjqA in training set T0547 130 :TVNGFKDRE 1kjqA 16 :MLLGSGELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59928 # 2af4C.130.19 read from T0547.t04.many.frag # found chain 2af4C in template set T0547 130 :TVNGFKDRE 2af4C 20 :ALPETEDIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=59929 # 1l1lA.130.323 read from T0547.t04.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)N132 (1l1lA)G326 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TV 1l1lA 324 :AL T0547 133 :GFKDRE 1l1lA 327 :SNDDQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=59931 # 1sr9A.130.140 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)G133 (1sr9A)T144 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1sr9A)R147 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TVN 1sr9A 141 :QVL T0547 134 :FK 1sr9A 145 :QC T0547 137 :RE 1sr9A 148 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=59934 # 1z90A.130.132 read from T0547.t04.many.frag # found chain 1z90A in template set T0547 130 :TVNGFKDRE 1z90A 133 :LMNSFNTHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=59935 # 1gq8A.130.59 read from T0547.t04.many.frag # found chain 1gq8A in training set Warning: unaligning (T0547)K135 (1gq8A)G65 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TVNGF 1gq8A 60 :MFLGD T0547 136 :DRE 1gq8A 66 :RTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=59937 # 1drw.130.8 read from T0547.t04.many.frag # found chain 1drw in template set Warning: unaligning (T0547)G133 (1drw)G12 because N (gamma') conformation "forbidden" or filtered. T0547 130 :TVN 1drw 9 :AIA T0547 134 :FKDRE 1drw 13 :AGGRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=59939 # 1v2xA.130.25 read from T0547.t04.many.frag # found chain 1v2xA in training set Warning: unaligning (T0547)N132 (1v2xA)E28 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1v2xA)K32 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TV 1v2xA 26 :LL T0547 133 :GFK 1v2xA 29 :NVH T0547 137 :RE 1v2xA 33 :PH Number of specific fragments extracted= 3 number of extra gaps= 2 total=59942 # 1qo0D.130.15 read from T0547.t04.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)D136 (1qo0D)G22 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TVNGFK 1qo0D 16 :LVLNPP T0547 137 :RE 1qo0D 23 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=59944 # 1omzA.130.32 read from T0547.t04.many.frag # found chain 1omzA in template set Warning: unaligning (T0547)K135 (1omzA)N75 because L (left) conformation "forbidden" or filtered. T0547 130 :TVNGF 1omzA 70 :IMQTY T0547 136 :DRE 1omzA 76 :RTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=59946 # 1c1dA.130.178 read from T0547.t04.many.frag # found chain 1c1dA in training set T0547 130 :TVNGFKDRE 1c1dA 179 :LVQGLGAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59947 # 1zzmA.130.36 read from T0547.t04.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)G133 (1zzmA)A40 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TVN 1zzmA 37 :IVP T0547 134 :FKDRE 1zzmA 41 :TEAEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=59949 # 1ir6A.130.36 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 130 :TVNGFKDRE 1ir6A 76 :RVHGDYDAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=59950 # 1w77A.130.74 read from T0547.t04.many.frag # found chain 1w77A in template set Warning: unaligning (T0547)T130 (1w77A)R149 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1w77A)I152 because P (beta_P) conformation "forbidden" or filtered. T0547 131 :VN 1w77A 150 :FA T0547 134 :FKDRE 1w77A 153 :PGKER Number of specific fragments extracted= 2 number of extra gaps= 2 total=59952 # 1rttA.130.10 read from T0547.t04.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)N132 (1rttA)S13 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TV 1rttA 11 :GI T0547 133 :GFKDRE 1rttA 14 :GSLRSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=59954 # 1epuA.130.101 read from T0547.t04.many.frag # found chain 1epuA in template set T0547 130 :TVNGFKDRE 1epuA 102 :FFTEACPEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=59955 # 1u8xX.131.61 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)G133 (1u8xX)D41 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :VN 1u8xX 39 :LY T0547 134 :FKDREL 1u8xX 42 :NDKERQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=59957 # 1yzyA.131.250 read from T0547.t04.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)G133 (1yzyA)G252 because G (3-10) conformation "forbidden" or filtered. T0547 131 :VN 1yzyA 250 :LS T0547 134 :FKDREL 1yzyA 253 :SCSVMT Number of specific fragments extracted= 2 number of extra gaps= 1 total=59959 # 1u9yA.131.120 read from T0547.t04.many.frag # found chain 1u9yA in template set T0547 131 :VNGFKDREL 1u9yA 121 :TINPHETHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=59960 # 2af4C.131.20 read from T0547.t04.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)G133 (2af4C)E23 because N (gamma') conformation "forbidden" or filtered. T0547 131 :VN 2af4C 21 :LP T0547 134 :FKDREL 2af4C 24 :TEDIRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=59962 # 1knwA.131.99 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 131 :VNGFKDREL 1knwA 100 :TADVIDQAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=59963 # 2ahrA.131.7 read from T0547.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0547)K135 (2ahrA)G9 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :VNGF 2ahrA 5 :IIGV T0547 136 :DREL 2ahrA 10 :KMAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=59965 # 1v8bA.131.261 read from T0547.t04.many.frag # found chain 1v8bA in template set T0547 131 :VNGFKDREL 1v8bA 262 :ICGYGDVGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=59966 # 1ks9A.131.4 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 131 :VNGFKDREL 1ks9A 5 :VLGCGALGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=59967 # 1drw.131.9 read from T0547.t04.many.frag # found chain 1drw in template set T0547 131 :VNGFKDREL 1drw 10 :IAGAGGRMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=59968 # 1obfO.131.5 read from T0547.t04.many.frag # found chain 1obfO in template set T0547 131 :VNGFKDREL 1obfO 6 :INGYGRIGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=59969 # 1sr9A.131.141 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)D136 (1sr9A)R147 because P (beta_P) conformation "forbidden" or filtered. T0547 131 :VNGFK 1sr9A 142 :VLTQC T0547 137 :REL 1sr9A 148 :PEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59971 # 1v4vA.131.9 read from T0547.t04.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)G133 (1v4vA)F12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1v4vA)T14 because E (beta_S) conformation "forbidden" or filtered. T0547 131 :VN 1v4vA 10 :LA T0547 134 :F 1v4vA 13 :G T0547 136 :DREL 1v4vA 15 :RPEA Number of specific fragments extracted= 3 number of extra gaps= 2 total=59974 # 1thfD.131.79 read from T0547.t04.many.frag # found chain 1thfD in training set T0547 131 :VNGFKDREL 1thfD 80 :GGGIHDFET Number of specific fragments extracted= 1 number of extra gaps= 0 total=59975 # 1xccA.131.70 read from T0547.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)S72 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)S72 T0547 133 :GFKDREL 1xccA 73 :CNSKESH Number of specific fragments extracted= 1 number of extra gaps= 1 total=59976 # 1omzA.131.33 read from T0547.t04.many.frag # found chain 1omzA in template set Warning: unaligning (T0547)K135 (1omzA)N75 because L (left) conformation "forbidden" or filtered. T0547 131 :VNGF 1omzA 71 :MQTY T0547 136 :DREL 1omzA 76 :RTDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59978 # 1epuA.131.102 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)G133 (1epuA)E105 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :VN 1epuA 103 :FT T0547 134 :FKDREL 1epuA 106 :ACPEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=59980 # 1ru3A.131.162 read from T0547.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)G133 (1ru3A)R165 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1ru3A)D168 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :VN 1ru3A 163 :IG T0547 134 :FK 1ru3A 166 :AK T0547 137 :REL 1ru3A 169 :SKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=59983 # 1l1lA.131.324 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 131 :VNGFKDREL 1l1lA 325 :LGSNDDQDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=59984 # 1uq5A.131.87 read from T0547.t04.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)D136 (1uq5A)N97 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :VNGFK 1uq5A 92 :FFHPD T0547 137 :REL 1uq5A 98 :QED Number of specific fragments extracted= 2 number of extra gaps= 1 total=59986 # 1pjr.131.60 read from T0547.t04.many.frag # found chain 1pjr in template set T0547 131 :VNGFKDREL 1pjr 61 :AITFTNKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=59987 # 1qo0D.131.16 read from T0547.t04.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)G133 (1qo0D)N19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1qo0D)G22 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :VN 1qo0D 17 :VL T0547 134 :FK 1qo0D 20 :PP T0547 137 :REL 1qo0D 23 :EVS Number of specific fragments extracted= 3 number of extra gaps= 2 total=59990 # 7odcA.131.109 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G133 (7odcA)N112 because E (beta_S) conformation "forbidden" or filtered. T0547 131 :VN 7odcA 110 :YA T0547 134 :FKDREL 7odcA 113 :PCKQVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=59992 # 1yzhA.131.69 read from T0547.t04.many.frag # found chain 1yzhA in template set T0547 131 :VNGFKDREL 1yzhA 67 :GIDIQKSVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=59993 # 1mvlA.131.136 read from T0547.t04.many.frag # found chain 1mvlA in template set Warning: unaligning (T0547)G133 (1mvlA)P139 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1mvlA)M141 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1mvlA)N142 because P (beta_P) conformation "forbidden" or filtered. T0547 131 :VN 1mvlA 137 :VA T0547 134 :F 1mvlA 140 :A T0547 137 :REL 1mvlA 143 :TLM Number of specific fragments extracted= 3 number of extra gaps= 2 total=59996 # 1l0bA.131.11 read from T0547.t04.many.frag # found chain 1l0bA in template set T0547 131 :VNGFKDREL 1l0bA 1600 :VSGLTPKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=59997 # 1yrbA.131.113 read from T0547.t04.many.frag # found chain 1yrbA in training set Warning: unaligning (T0547)N132 (1yrbA)D101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1yrbA)Q105 because P (beta_P) conformation "forbidden" or filtered. T0547 131 :V 1yrbA 100 :I T0547 133 :GFK 1yrbA 102 :TPG T0547 137 :REL 1yrbA 106 :MET Number of specific fragments extracted= 3 number of extra gaps= 2 total=60000 # 1kjqA.131.15 read from T0547.t04.many.frag # found chain 1kjqA in training set T0547 131 :VNGFKDREL 1kjqA 17 :LLGSGELGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60001 # 1w77A.131.75 read from T0547.t04.many.frag # found chain 1w77A in template set Warning: unaligning (T0547)N132 (1w77A)A151 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :V 1w77A 150 :F T0547 133 :GFKDREL 1w77A 152 :IPGKERQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=60003 # 1e5kA.131.51 read from T0547.t04.many.frag # found chain 1e5kA in training set T0547 131 :VNGFKDREL 1e5kA 52 :VNANRHQEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60004 # 1zcjA.131.41 read from T0547.t04.many.frag # found chain 1zcjA in template set T0547 131 :VNGFKDREL 1zcjA 301 :VLGLGTMGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60005 # 1u8xX.132.62 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)K135 (1u8xX)D43 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :NGF 1u8xX 40 :YDN T0547 136 :DRELI 1u8xX 44 :KERQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=60007 # 1yzyA.132.251 read from T0547.t04.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)D136 (1yzyA)S255 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :NGFK 1yzyA 251 :SGSC T0547 137 :RELI 1yzyA 256 :VMTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=60009 # 1ru3A.132.163 read from T0547.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)N132 (1ru3A)G164 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1ru3A)D168 because Y (epsilon') conformation "forbidden" or filtered. T0547 133 :GFK 1ru3A 165 :RAK T0547 137 :RELI 1ru3A 169 :SKAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=60011 # 1knwA.132.100 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N132 (1knwA)A101 because Y (epsilon') conformation "forbidden" or filtered. T0547 133 :GFKDRELI 1knwA 102 :DVIDQATL Number of specific fragments extracted= 1 number of extra gaps= 1 total=60012 # 2af4C.132.21 read from T0547.t04.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)D136 (2af4C)D26 because E (beta_S) conformation "forbidden" or filtered. T0547 132 :NGFK 2af4C 22 :PETE T0547 137 :RELI 2af4C 27 :IRTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60014 # 1sr9A.132.142 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 132 :NGFKDRELI 1sr9A 143 :LTQCRPELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60015 # 1thfD.132.80 read from T0547.t04.many.frag # found chain 1thfD in training set T0547 132 :NGFKDRELI 1thfD 81 :GGIHDFETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60016 # 1omzA.132.34 read from T0547.t04.many.frag # found chain 1omzA in template set Warning: unaligning (T0547)K135 (1omzA)N75 because L (left) conformation "forbidden" or filtered. T0547 132 :NGF 1omzA 72 :QTY T0547 136 :DRELI 1omzA 76 :RTDLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60018 # 1uq5A.132.88 read from T0547.t04.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)G133 (1uq5A)H94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1uq5A)N97 because Y (epsilon') conformation "forbidden" or filtered. T0547 132 :N 1uq5A 93 :F T0547 134 :FK 1uq5A 95 :PD T0547 137 :RELI 1uq5A 98 :QEDA Number of specific fragments extracted= 3 number of extra gaps= 2 total=60021 # 2ahrA.132.8 read from T0547.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0547)K135 (2ahrA)G9 because Y (epsilon') conformation "forbidden" or filtered. T0547 132 :NGF 2ahrA 6 :IGV T0547 136 :DRELI 2ahrA 10 :KMASA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60023 # 1w77A.132.76 read from T0547.t04.many.frag # found chain 1w77A in template set Warning: unaligning (T0547)N132 (1w77A)A151 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1w77A)I152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1w77A)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :F 1w77A 153 :P T0547 136 :DRELI 1w77A 155 :KERQD Number of specific fragments extracted= 2 number of extra gaps= 2 total=60025 # 1epuA.132.103 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)G133 (1epuA)E105 because Y (epsilon') conformation "forbidden" or filtered. T0547 132 :N 1epuA 104 :T T0547 134 :FKDRELI 1epuA 106 :ACPEELF Number of specific fragments extracted= 2 number of extra gaps= 1 total=60027 # 2av4A.132.50 read from T0547.t04.many.frag # found chain 2av4A in template set Warning: unaligning (T0547)N132 (2av4A)G49 because Y (epsilon') conformation "forbidden" or filtered. T0547 133 :GFKDRELI 2av4A 50 :HDYDPDCM Number of specific fragments extracted= 1 number of extra gaps= 1 total=60028 # 1z5oA.132.57 read from T0547.t04.many.frag # found chain 1z5oA in template set Warning: unaligning (T0547)K135 (1z5oA)G51 because S (epsilon) conformation "forbidden" or filtered. T0547 132 :NGF 1z5oA 48 :SGI T0547 136 :DRELI 1z5oA 52 :KVAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60030 # 1u9yA.132.121 read from T0547.t04.many.frag # found chain 1u9yA in template set T0547 132 :NGFKDRELI 1u9yA 122 :INPHETHIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60031 # 1ks9A.132.5 read from T0547.t04.many.frag # found chain 1ks9A in training set Warning: unaligning (T0547)G133 (1ks9A)G7 because S (epsilon) conformation "forbidden" or filtered. T0547 132 :N 1ks9A 6 :L T0547 134 :FKDRELI 1ks9A 8 :CGALGQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60033 # 1pjr.132.61 read from T0547.t04.many.frag # found chain 1pjr in template set T0547 132 :NGFKDRELI 1pjr 62 :ITFTNKAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60034 # 1oi7A.132.69 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 132 :NGFKDRELI 1oi7A 70 :IFVPAPAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60035 1dq3A expands to /projects/compbio/data/pdb/1dq3.pdb.gz 1dq3A:# 1dq3A.132.261 read from T0547.t04.many.frag # adding 1dq3A to template set # found chain 1dq3A in template set Warning: unaligning (T0547)N132 (1dq3A)G262 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1dq3A)M263 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :FKDRELI 1dq3A 264 :VNKRLIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=60036 # 1t2dA.132.33 read from T0547.t04.many.frag # found chain 1t2dA in training set Warning: unaligning (T0547)K135 (1t2dA)V36 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :NGF 1t2dA 33 :FDI T0547 136 :DRELI 1t2dA 37 :KNMPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=60038 # 1obfO.132.6 read from T0547.t04.many.frag # found chain 1obfO in template set T0547 132 :NGFKDRELI 1obfO 7 :NGYGRIGRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60039 # 1drw.132.10 read from T0547.t04.many.frag # found chain 1drw in template set Warning: unaligning (T0547)G133 (1drw)G12 because N (gamma') conformation "forbidden" or filtered. T0547 132 :N 1drw 11 :A T0547 134 :FKDRELI 1drw 13 :AGGRMGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=60041 # 1l1lA.132.325 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 132 :NGFKDRELI 1l1lA 326 :GSNDDQDFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60042 # 1v4vA.132.10 read from T0547.t04.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)G133 (1v4vA)F12 because Y (epsilon') conformation "forbidden" or filtered. T0547 132 :N 1v4vA 11 :A T0547 134 :FKDRELI 1v4vA 13 :GTRPEAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=60044 # 1yzhA.132.70 read from T0547.t04.many.frag # found chain 1yzhA in template set Warning: unaligning (T0547)N132 (1yzhA)I68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1yzhA)Q71 because E (beta_S) conformation "forbidden" or filtered. T0547 133 :GF 1yzhA 69 :DI T0547 136 :DRELI 1yzhA 72 :KSVLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=60046 # 1xccA.132.71 read from T0547.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)S72 T0547 133 :GFKDRELI 1xccA 73 :CNSKESHD Number of specific fragments extracted= 1 number of extra gaps= 1 total=60047 # 1sur.132.50 read from T0547.t04.many.frag # found chain 1sur in template set Warning: unaligning (T0547)G133 (1sur)S52 because G (3-10) conformation "forbidden" or filtered. T0547 132 :N 1sur 51 :S T0547 134 :FKDRELI 1sur 53 :FGIQAAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60049 # 2b4aA.132.20 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 132 :NGFKDRELI 2b4aA 9 :VEDEPSHAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60050 # 2asbA.132.153 read from T0547.t04.many.frag # found chain 2asbA in training set Warning: unaligning (T0547)G133 (2asbA)D259 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (2asbA)D261 because E (beta_S) conformation "forbidden" or filtered. T0547 132 :N 2asbA 258 :I T0547 134 :F 2asbA 260 :Y T0547 136 :DRELI 2asbA 262 :DDPAR Number of specific fragments extracted= 3 number of extra gaps= 2 total=60053 # 1zzmA.132.38 read from T0547.t04.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)G133 (1zzmA)A40 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :N 1zzmA 39 :P T0547 134 :FKDRELI 1zzmA 41 :TEAENFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60055 # 1u8xX.133.63 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)G133 (1u8xX)D41 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :FKDRELIN 1u8xX 42 :NDKERQDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=60056 # 2af4C.133.22 read from T0547.t04.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)G133 (2af4C)E23 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (2af4C)E25 because G (3-10) conformation "forbidden" or filtered. T0547 134 :F 2af4C 24 :T T0547 136 :DRELIN 2af4C 26 :DIRTLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=60058 # 1knwA.133.101 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 133 :GFKDRELIN 1knwA 102 :DVIDQATLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60059 # 1oi7A.133.70 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 133 :GFKDRELIN 1oi7A 71 :FVPAPAAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=60060 # 1sr9A.133.143 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 133 :GFKDRELIN 1sr9A 144 :TQCRPELIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60061 # 1z5oA.133.58 read from T0547.t04.many.frag # found chain 1z5oA in template set T0547 133 :GFKDRELIN 1z5oA 49 :GIGKVAAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60062 # 2av4A.133.51 read from T0547.t04.many.frag # found chain 2av4A in template set Warning: unaligning (T0547)G133 (2av4A)H50 because N (gamma') conformation "forbidden" or filtered. T0547 134 :FKDRELIN 2av4A 51 :DYDPDCMK Number of specific fragments extracted= 1 number of extra gaps= 1 total=60063 # 1pii.133.139 read from T0547.t04.many.frag # found chain 1pii in template set T0547 133 :GFKDRELIN 1pii 140 :VLDDDQYRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60064 # 1ru3A.133.164 read from T0547.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)G133 (1ru3A)R165 because E (beta_S) conformation "forbidden" or filtered. T0547 134 :FKDRELIN 1ru3A 166 :AKDSKAAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=60065 # 1uq5A.133.89 read from T0547.t04.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)G133 (1uq5A)H94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1uq5A)N97 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :FK 1uq5A 95 :PD T0547 137 :RELIN 1uq5A 98 :QEDAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=60067 # 1w77A.133.77 read from T0547.t04.many.frag # found chain 1w77A in template set Warning: unaligning (T0547)G133 (1w77A)I152 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :FKDRELIN 1w77A 153 :PGKERQDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=60068 # 1dq3A.133.262 read from T0547.t04.many.frag # found chain 1dq3A in template set Warning: unaligning (T0547)G133 (1dq3A)M263 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :FKDRELIN 1dq3A 264 :VNKRLIED Number of specific fragments extracted= 1 number of extra gaps= 1 total=60069 # 2b4aA.133.21 read from T0547.t04.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)G133 (2b4aA)E10 because E (beta_S) conformation "forbidden" or filtered. T0547 134 :FKDRELIN 2b4aA 11 :DEPSHATL Number of specific fragments extracted= 1 number of extra gaps= 1 total=60070 # 1yzyA.133.252 read from T0547.t04.many.frag # found chain 1yzyA in template set T0547 133 :GFKDRELIN 1yzyA 252 :GSCSVMTNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60071 # 1yzhA.133.71 read from T0547.t04.many.frag # found chain 1yzhA in template set Warning: unaligning (T0547)G133 (1yzhA)D69 because E (beta_S) conformation "forbidden" or filtered. T0547 134 :FKDRELIN 1yzhA 70 :IQKSVLSY Number of specific fragments extracted= 1 number of extra gaps= 1 total=60072 # 1zzmA.133.39 read from T0547.t04.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)G133 (1zzmA)A40 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1zzmA)E42 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :F 1zzmA 41 :T T0547 136 :DRELIN 1zzmA 43 :AENFAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=60074 # 1sur.133.51 read from T0547.t04.many.frag # found chain 1sur in template set Warning: unaligning (T0547)G133 (1sur)S52 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1sur)F53 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R137 (1sur)Q56 because G (3-10) conformation "forbidden" or filtered. T0547 135 :KD 1sur 54 :GI T0547 138 :ELIN 1sur 57 :AAVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=60076 # 1pjr.133.62 read from T0547.t04.many.frag # found chain 1pjr in template set T0547 133 :GFKDRELIN 1pjr 63 :TFTNKAARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60077 # 1qo0D.133.18 read from T0547.t04.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)D136 (1qo0D)G22 because Y (epsilon') conformation "forbidden" or filtered. T0547 133 :GFK 1qo0D 19 :NPP T0547 137 :RELIN 1qo0D 23 :EVSDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60079 # 1drw.133.11 read from T0547.t04.many.frag # found chain 1drw in template set Warning: unaligning (T0547)G133 (1drw)G12 because N (gamma') conformation "forbidden" or filtered. T0547 134 :FKDRELIN 1drw 13 :AGGRMGRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=60080 # 1cjaA.133.125 read from T0547.t04.many.frag # found chain 1cjaA in template set T0547 133 :GFKDRELIN 1cjaA 127 :SSNSEEGTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60081 # 1h6dA.133.156 read from T0547.t04.many.frag # found chain 1h6dA in template set Warning: unaligning (T0547)G133 (1h6dA)I157 because D (zeta) conformation "forbidden" or filtered. T0547 134 :FKDRELIN 1h6dA 158 :LPNSLHAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=60082 # 1rcqA.133.79 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)K135 (1rcqA)F82 because G (3-10) conformation "forbidden" or filtered. T0547 133 :GF 1rcqA 80 :GF T0547 136 :DRELIN 1rcqA 83 :EASELE Number of specific fragments extracted= 2 number of extra gaps= 1 total=60084 # 1srqA.133.126 read from T0547.t04.many.frag # found chain 1srqA in template set T0547 133 :GFKDRELIN 1srqA 201 :KLGQTSEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60085 # 1v4vA.133.11 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 133 :GFKDRELIN 1v4vA 12 :FGTRPEATK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60086 # 1xccA.133.72 read from T0547.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)G133 (1xccA)C73 because G (3-10) conformation "forbidden" or filtered. T0547 134 :FKDRELIN 1xccA 74 :NSKESHDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=60087 # 1t2dA.133.34 read from T0547.t04.many.frag # found chain 1t2dA in training set T0547 133 :GFKDRELIN 1t2dA 34 :DIVKNMPHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60088 # 2asbA.133.154 read from T0547.t04.many.frag # found chain 2asbA in training set Warning: unaligning (T0547)G133 (2asbA)D259 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :FKDRELIN 2asbA 260 :YDDDPARF Number of specific fragments extracted= 1 number of extra gaps= 1 total=60089 # 1ks9A.133.6 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 133 :GFKDRELIN 1ks9A 7 :GCGALGQLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=60090 # 1thfD.133.81 read from T0547.t04.many.frag # found chain 1thfD in training set T0547 133 :GFKDRELIN 1thfD 82 :GIHDFETAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60091 # 1oi7A.134.71 read from T0547.t04.many.frag # found chain 1oi7A in training set Warning: unaligning (T0547)K135 (1oi7A)P73 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :F 1oi7A 72 :V T0547 136 :DRELINI 1oi7A 74 :APAAADA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60093 # 2af4C.134.23 read from T0547.t04.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)D136 (2af4C)D26 because E (beta_S) conformation "forbidden" or filtered. T0547 134 :FK 2af4C 24 :TE T0547 137 :RELINI 2af4C 27 :IRTLQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60095 # 1sr9A.134.144 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)D136 (1sr9A)R147 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :FK 1sr9A 145 :QC T0547 137 :RELINI 1sr9A 148 :PELIER Number of specific fragments extracted= 2 number of extra gaps= 1 total=60097 # 1u8xX.134.64 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 134 :FKDRELINI 1u8xX 42 :NDKERQDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60098 # 1knwA.134.102 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 134 :FKDRELINI 1knwA 103 :VIDQATLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=60099 # 1pii.134.140 read from T0547.t04.many.frag # found chain 1pii in template set T0547 134 :FKDRELINI 1pii 141 :LDDDQYRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60100 # 1h6dA.134.157 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 134 :FKDRELINI 1h6dA 158 :LPNSLHAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60101 # 2av4A.134.52 read from T0547.t04.many.frag # found chain 2av4A in template set T0547 134 :FKDRELINI 2av4A 51 :DYDPDCMKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=60102 # 1uq5A.134.90 read from T0547.t04.many.frag # found chain 1uq5A in training set T0547 134 :FKDRELINI 1uq5A 95 :PDNQEDAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60103 # 1qtwA.134.8 read from T0547.t04.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)R137 (1qtwA)G12 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E138 (1qtwA)G13 because S (epsilon) conformation "forbidden" or filtered. T0547 134 :FKD 1qtwA 9 :SAA T0547 139 :LINI 1qtwA 14 :LANA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60105 # 1z5oA.134.59 read from T0547.t04.many.frag # found chain 1z5oA in template set Warning: unaligning (T0547)K135 (1z5oA)G51 because S (epsilon) conformation "forbidden" or filtered. T0547 134 :F 1z5oA 50 :I T0547 136 :DRELINI 1z5oA 52 :KVAAALG Number of specific fragments extracted= 2 number of extra gaps= 1 total=60107 # 1w77A.134.78 read from T0547.t04.many.frag # found chain 1w77A in template set Warning: unaligning (T0547)K135 (1w77A)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :F 1w77A 153 :P T0547 136 :DRELINI 1w77A 155 :KERQDSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60109 # 1zzmA.134.40 read from T0547.t04.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)K135 (1zzmA)E42 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :F 1zzmA 41 :T T0547 136 :DRELINI 1zzmA 43 :AENFARV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60111 # 1izoA.134.86 read from T0547.t04.many.frag # found chain 1izoA in template set T0547 134 :FKDRELINI 1izoA 87 :MDGSAHIHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60112 # 1dq3A.134.263 read from T0547.t04.many.frag # found chain 1dq3A in template set T0547 134 :FKDRELINI 1dq3A 264 :VNKRLIEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60113 # 2b4aA.134.22 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 134 :FKDRELINI 2b4aA 11 :DEPSHATLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60114 # 1yzhA.134.72 read from T0547.t04.many.frag # found chain 1yzhA in template set Warning: unaligning (T0547)K135 (1yzhA)Q71 because E (beta_S) conformation "forbidden" or filtered. T0547 134 :F 1yzhA 70 :I T0547 136 :DRELINI 1yzhA 72 :KSVLSYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60116 # 1oboA.134.9 read from T0547.t04.many.frag # found chain 1oboA in training set Warning: unaligning (T0547)R137 (1oboA)G1013 because T (delta_L) conformation "forbidden" or filtered. T0547 134 :FKD 1oboA 1010 :TQT T0547 138 :ELINI 1oboA 1014 :KTESV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60118 # 1qo0D.134.19 read from T0547.t04.many.frag # found chain 1qo0D in template set T0547 134 :FKDRELINI 1qo0D 20 :PPGEVSDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60119 # 1gqiA.134.180 read from T0547.t04.many.frag # found chain 1gqiA in training set T0547 134 :FKDRELINI 1gqiA 185 :YLAPRYTDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=60120 2bnlA expands to /projects/compbio/data/pdb/2bnl.pdb.gz 2bnlA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2bnlA.134.61 read from T0547.t04.many.frag # adding 2bnlA to template set # found chain 2bnlA in template set T0547 134 :FKDRELINI 2bnlA 62 :AAESQISEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60121 # 1yzyA.134.253 read from T0547.t04.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)D136 (1yzyA)S255 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :FK 1yzyA 253 :SC T0547 137 :RELINI 1yzyA 256 :VMTNKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=60123 # 1epuA.134.105 read from T0547.t04.many.frag # found chain 1epuA in template set T0547 134 :FKDRELINI 1epuA 106 :ACPEELFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60124 # 1pjr.134.63 read from T0547.t04.many.frag # found chain 1pjr in template set T0547 134 :FKDRELINI 1pjr 64 :FTNKAAREM Number of specific fragments extracted= 1 number of extra gaps= 0 total=60125 # 1srqA.134.127 read from T0547.t04.many.frag # found chain 1srqA in template set T0547 134 :FKDRELINI 1srqA 202 :LGQTSEEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60126 # 1drw.134.12 read from T0547.t04.many.frag # found chain 1drw in template set Warning: unaligning (T0547)D136 (1drw)G15 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :FK 1drw 13 :AG T0547 137 :RELINI 1drw 16 :RMGRQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60128 # 1oltA.134.117 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)K135 (1oltA)N119 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :F 1oltA 118 :L T0547 136 :DRELINI 1oltA 120 :KAQISRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60130 # 1rwhA.134.3 read from T0547.t04.many.frag # found chain 1rwhA in training set Warning: unaligning (T0547)F134 because first residue in template chain is (1rwhA)P4 Warning: unaligning (T0547)K135 (1rwhA)G5 because Y (epsilon') conformation "forbidden" or filtered. T0547 136 :DRELINI 1rwhA 6 :AAEFAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60131 # 1v4vA.134.12 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 134 :FKDRELINI 1v4vA 13 :GTRPEATKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=60132 # 1cjaA.134.126 read from T0547.t04.many.frag # found chain 1cjaA in template set Warning: unaligning (T0547)D136 (1cjaA)S130 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :FK 1cjaA 128 :SN T0547 137 :RELINI 1cjaA 131 :EEGTNM Number of specific fragments extracted= 2 number of extra gaps= 1 total=60134 # 1oi7A.135.72 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 135 :KDRELINIG 1oi7A 73 :PAPAAADAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60135 # 2af4C.135.24 read from T0547.t04.many.frag # found chain 2af4C in template set T0547 135 :KDRELINIG 2af4C 25 :EDIRTLQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60136 # 1h6dA.135.158 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 135 :KDRELINIG 1h6dA 159 :PNSLHAEFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60137 # 1qtwA.135.9 read from T0547.t04.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)D136 (1qtwA)A11 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R137 (1qtwA)G12 because T (delta_L) conformation "forbidden" or filtered. T0547 135 :K 1qtwA 10 :A T0547 138 :ELINIG 1qtwA 13 :GLANAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60139 # 2av4A.135.53 read from T0547.t04.many.frag # found chain 2av4A in template set T0547 135 :KDRELINIG 2av4A 52 :YDPDCMKMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=60140 # 1izoA.135.87 read from T0547.t04.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)D136 (1izoA)G89 because S (epsilon) conformation "forbidden" or filtered. T0547 135 :K 1izoA 88 :D T0547 137 :RELINIG 1izoA 90 :SAHIHRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=60142 # 1sr9A.135.145 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 135 :KDRELINIG 1sr9A 146 :CRPELIERT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60143 # 1pii.135.141 read from T0547.t04.many.frag # found chain 1pii in template set T0547 135 :KDRELINIG 1pii 142 :DDDQYRQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60144 # 1gqiA.135.181 read from T0547.t04.many.frag # found chain 1gqiA in training set T0547 135 :KDRELINIG 1gqiA 186 :LAPRYTDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60145 # 1z5oA.135.60 read from T0547.t04.many.frag # found chain 1z5oA in template set Warning: unaligning (T0547)K135 (1z5oA)G51 because S (epsilon) conformation "forbidden" or filtered. T0547 136 :DRELINIG 1z5oA 52 :KVAAALGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=60146 # 2bnlA.135.62 read from T0547.t04.many.frag # found chain 2bnlA in template set T0547 135 :KDRELINIG 2bnlA 63 :AESQISELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60147 # 1u8xX.135.65 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 135 :KDRELINIG 1u8xX 43 :DKERQDRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60148 # 1uq5A.135.91 read from T0547.t04.many.frag # found chain 1uq5A in training set Warning: unaligning (T0547)D136 (1uq5A)N97 because Y (epsilon') conformation "forbidden" or filtered. T0547 135 :K 1uq5A 96 :D T0547 137 :RELINIG 1uq5A 98 :QEDAEAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=60150 # 1p3dA.135.26 read from T0547.t04.many.frag # found chain 1p3dA in training set T0547 135 :KDRELINIG 1p3dA 27 :GGAGMSGIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60151 # 1knwA.135.103 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 135 :KDRELINIG 1knwA 104 :IDQATLERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60152 # 1zzmA.135.41 read from T0547.t04.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)K135 (1zzmA)E42 because Y (epsilon') conformation "forbidden" or filtered. T0547 136 :DRELINIG 1zzmA 43 :AENFARVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=60153 # 1oltA.135.118 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 135 :KDRELINIG 1oltA 119 :NKAQISRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=60154 # 1w77A.135.79 read from T0547.t04.many.frag # found chain 1w77A in template set Warning: unaligning (T0547)K135 (1w77A)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 136 :DRELINIG 1w77A 155 :KERQDSVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=60155 # 1oboA.135.10 read from T0547.t04.many.frag # found chain 1oboA in training set T0547 135 :KDRELINIG 1oboA 1011 :QTGKTESVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60156 # 2b4aA.135.23 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 135 :KDRELINIG 2b4aA 12 :EPSHATLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60157 # 1nc5A.135.57 read from T0547.t04.many.frag # found chain 1nc5A in training set Warning: unaligning (T0547)K135 (1nc5A)G58 because T (delta_L) conformation "forbidden" or filtered. T0547 136 :DRELINIG 1nc5A 59 :EKRYFEYA Number of specific fragments extracted= 1 number of extra gaps= 1 total=60158 # 1sur.135.53 read from T0547.t04.many.frag # found chain 1sur in template set Warning: unaligning (T0547)K135 (1sur)G54 because P (beta_P) conformation "forbidden" or filtered. T0547 136 :DRELINIG 1sur 55 :IQAAVSLH Number of specific fragments extracted= 1 number of extra gaps= 1 total=60159 1nvvS expands to /projects/compbio/data/pdb/1nvv.pdb.gz 1nvvS:# 1nvvS.135.53 read from T0547.t04.many.frag # adding 1nvvS to template set # found chain 1nvvS in template set T0547 135 :KDRELINIG 1nvvS 619 :ADPNFVRTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60160 # 1yzhA.135.73 read from T0547.t04.many.frag # found chain 1yzhA in template set T0547 135 :KDRELINIG 1yzhA 71 :QKSVLSYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60161 # 1dq3A.135.264 read from T0547.t04.many.frag # found chain 1dq3A in template set Warning: unaligning (T0547)K135 (1dq3A)N265 because N (gamma') conformation "forbidden" or filtered. T0547 136 :DRELINIG 1dq3A 266 :KRLIEDVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=60162 # 1uhvA.135.30 read from T0547.t04.many.frag # found chain 1uhvA in template set T0547 135 :KDRELINIG 1uhvA 31 :LQKEYIETL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60163 # 1qo0D.135.20 read from T0547.t04.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)D136 (1qo0D)G22 because Y (epsilon') conformation "forbidden" or filtered. T0547 135 :K 1qo0D 21 :P T0547 137 :RELINIG 1qo0D 23 :EVSDALV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60165 # 1xeaA.135.71 read from T0547.t04.many.frag # found chain 1xeaA in template set T0547 135 :KDRELINIG 1xeaA 72 :ATDVHSTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60166 # 1srqA.135.128 read from T0547.t04.many.frag # found chain 1srqA in template set Warning: unaligning (T0547)G143 (1srqA)F211 because G (3-10) conformation "forbidden" or filtered. T0547 135 :KDRELINI 1srqA 203 :GQTSEEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=60167 # 1xgkA.135.13 read from T0547.t04.many.frag # found chain 1xgkA in training set T0547 135 :KDRELINIG 1xgkA 14 :TGRQGASLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60168 # 1h6dA.136.159 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 136 :DRELINIGF 1h6dA 160 :NSLHAEFAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60169 # 1oi7A.136.73 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 136 :DRELINIGF 1oi7A 74 :APAAADAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60170 # 1pii.136.142 read from T0547.t04.many.frag # found chain 1pii in template set T0547 136 :DRELINIGF 1pii 143 :DDQYRQLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60171 # 1qtwA.136.10 read from T0547.t04.many.frag # found chain 1qtwA in training set T0547 136 :DRELINIGF 1qtwA 11 :AGGLANAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60172 # 1gqiA.136.182 read from T0547.t04.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)D136 (1gqiA)A187 because P (beta_P) conformation "forbidden" or filtered. T0547 137 :RELINIGF 1gqiA 188 :PRYTDYAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=60173 # 1izoA.136.88 read from T0547.t04.many.frag # found chain 1izoA in template set T0547 136 :DRELINIGF 1izoA 89 :GSAHIHRKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=60174 # 1zzmA.136.42 read from T0547.t04.many.frag # found chain 1zzmA in training set T0547 136 :DRELINIGF 1zzmA 43 :AENFARVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60175 # 2af4C.136.25 read from T0547.t04.many.frag # found chain 2af4C in template set T0547 136 :DRELINIGF 2af4C 26 :DIRTLQAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60176 # 2av4A.136.54 read from T0547.t04.many.frag # found chain 2av4A in template set T0547 136 :DRELINIGF 2av4A 53 :DPDCMKMDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60177 # 2bnlA.136.63 read from T0547.t04.many.frag # found chain 2bnlA in template set T0547 136 :DRELINIGF 2bnlA 64 :ESQISELAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60178 # 1oltA.136.119 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 136 :DRELINIGF 1oltA 120 :KAQISRLMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60179 # 1qmeA.136.594 read from T0547.t04.many.frag # found chain 1qmeA in template set T0547 136 :DRELINIGF 1qmeA 643 :DISPGDLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60180 # 1xeaA.136.72 read from T0547.t04.many.frag # found chain 1xeaA in template set T0547 136 :DRELINIGF 1xeaA 73 :TDVHSTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60181 # 1z5oA.136.61 read from T0547.t04.many.frag # found chain 1z5oA in template set T0547 136 :DRELINIGF 1z5oA 52 :KVAAALGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60182 # 2b4aA.136.24 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 136 :DRELINIGF 2b4aA 13 :PSHATLIQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=60183 # 1qo0D.136.21 read from T0547.t04.many.frag # found chain 1qo0D in template set T0547 136 :DRELINIGF 1qo0D 22 :GEVSDALVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60184 # 1p3dA.136.27 read from T0547.t04.many.frag # found chain 1p3dA in training set T0547 136 :DRELINIGF 1p3dA 28 :GAGMSGIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60185 # 1sr9A.136.146 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 136 :DRELINIGF 1sr9A 147 :RPELIERTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60186 # 1m22A.136.9 read from T0547.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)D136 (1m22A)E47 because L (left) conformation "forbidden" or filtered. T0547 137 :RELINIGF 1m22A 48 :TDVADLQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=60187 # 1k0fA.136.195 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 136 :DRELINIGF 1k0fA 227 :AHDMQELAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60188 # 2bduA.136.25 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 136 :DRELINIGF 2bduA 26 :PTRVEEIIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=60189 # 1o12A.136.71 read from T0547.t04.many.frag # found chain 1o12A in template set T0547 136 :DRELINIGF 1o12A 60 :NCDFSEMEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60190 # 1wdpA.136.68 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 136 :DRELINIGF 1wdpA 69 :WRAYRSLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60191 # 1dozA.136.88 read from T0547.t04.many.frag # found chain 1dozA in template set Warning: unaligning (T0547)R137 (1dozA)P91 because C (cis) conformation "forbidden" or filtered. T0547 136 :D 1dozA 90 :E T0547 138 :ELINIGF 1dozA 92 :FIEDAVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60193 # 1wb9A.136.429 read from T0547.t04.many.frag # found chain 1wb9A in template set T0547 136 :DRELINIGF 1wb9A 430 :NEELDEWRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60194 # 1u8xX.136.66 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 136 :DRELINIGF 1u8xX 44 :KERQDRIAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60195 # 1oboA.136.11 read from T0547.t04.many.frag # found chain 1oboA in training set Warning: unaligning (T0547)R137 (1oboA)G1013 because T (delta_L) conformation "forbidden" or filtered. T0547 136 :D 1oboA 1012 :T T0547 138 :ELINIGF 1oboA 1014 :KTESVAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=60197 # 1yzhA.136.74 read from T0547.t04.many.frag # found chain 1yzhA in template set T0547 136 :DRELINIGF 1yzhA 72 :KSVLSYALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=60198 # 1lyvA.136.101 read from T0547.t04.many.frag # found chain 1lyvA in training set T0547 136 :DRELINIGF 1lyvA 264 :QSQLESHFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60199 1lshA expands to /projects/compbio/data/pdb/1lsh.pdb.gz 1lshA:Bad short name: OE for alphabet: pdb_atoms Skipped atom 135, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 139, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 141, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 144, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 148, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 150, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 152, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 154, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 157, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 161, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 163, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 220, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 224, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 226, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 228, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 230, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 232, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 234, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 236, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 292, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 296, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 298, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 300, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 302, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 322, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 326, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 328, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 330, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 332, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 334, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 336, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 463, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 467, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 469, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 471, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 473, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 475, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 634, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 638, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 640, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 642, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 644, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 646, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 648, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 670, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 674, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 676, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 678, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 680, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 682, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 775, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 777, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 779, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 781, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1071, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1075, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1077, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1079, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1167, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1171, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1173, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1285, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1289, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1291, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1293, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1295, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1297, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1384, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1388, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1390, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1649, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1653, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1655, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1657, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1659, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1760, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1764, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1766, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1768, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1770, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1772, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1860, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1864, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1866, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1868, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1898, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1902, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1904, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1906, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1908, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1910, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1934, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1938, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1940, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1942, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2169, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2173, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2175, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2177, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2179, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2253, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2257, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2259, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2261, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2263, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2265, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2282, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2286, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2288, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2371, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2375, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2377, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2505, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2509, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2511, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2521, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2525, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2527, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2529, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2531, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2533, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2535, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2538, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2542, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2544, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2546, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2548, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2550, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2625, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2629, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2631, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2633, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2710, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2714, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2716, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2718, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2720, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2770, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2774, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2776, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2778, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2780, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2782, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3113, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3117, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3119, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3121, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3275, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3279, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3281, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3283, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3285, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3287, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3289, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3291, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3404, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3408, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3410, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3412, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3414, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3428, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3432, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3434, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3436, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3438, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3440, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3703, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3707, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3709, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3726, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3730, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3732, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3734, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3736, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3738, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3740, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3742, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3903, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3907, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3909, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3911, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3913, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3915, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4063, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4067, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4069, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4071, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4073, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4075, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4077, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4079, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4103, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4107, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4109, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4111, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4113, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4115, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4329, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4333, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4335, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4337, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4415, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4419, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4421, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4504, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4508, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4510, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4512, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4587, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4591, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4593, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4595, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4597, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4599, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4601, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4603, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4641, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4645, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4647, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4649, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4651, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4675, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4679, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4681, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4720, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4724, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4726, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4728, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4730, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4732, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4851, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4855, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4857, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4859, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4883, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4887, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4889, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4904, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4908, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4910, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4912, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4914, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5146, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5148, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5150, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5152, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5154, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5156, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5158, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5308, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5312, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5314, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5316, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5318, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5320, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5554, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5558, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5560, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5562, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5564, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5566, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5683, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5687, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5689, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5691, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5693, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5695, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5697, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5786, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5790, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5792, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5794, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5796, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5798, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6012, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6016, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6018, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6020, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6236, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6240, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6242, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6406, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6410, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6412, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6414, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6416, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6418, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6420, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6422, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6540, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6544, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6546, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6548, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6786, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6790, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6792, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6794, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6796, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6798, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6800, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6802, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7011, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7015, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7017, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7019, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7206, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7210, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7212, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7214, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7216, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7218, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7220, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7222, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7305, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7309, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7311, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7313, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7315, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7317, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7388, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7390, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7392, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7394, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7396, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7398, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7406, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7410, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7412, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7414, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7416, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7418, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7420, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7422, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7481, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7485, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7487, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7489, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7491, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7493, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7495, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7497, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7569, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7573, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7575, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7577, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7579, because occupancy 0.500 <= existing 0.500 in 1lshA # 1lshA.136.337 read from T0547.t04.many.frag # adding 1lshA to template set # found chain 1lshA in template set T0547 136 :DRELINIGF 1lshA 354 :QKDYRRWIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60200 # 1h6dA.137.160 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 137 :RELINIGFI 1h6dA 161 :SLHAEFAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60201 # 1pii.137.143 read from T0547.t04.many.frag # found chain 1pii in template set T0547 137 :RELINIGFI 1pii 144 :DQYRQLAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60202 # 1oi7A.137.74 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 137 :RELINIGFI 1oi7A 75 :PAAADAALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60203 # 1gqiA.137.183 read from T0547.t04.many.frag # found chain 1gqiA in training set T0547 137 :RELINIGFI 1gqiA 188 :PRYTDYARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60204 # 1zzmA.137.43 read from T0547.t04.many.frag # found chain 1zzmA in training set T0547 137 :RELINIGFI 1zzmA 44 :ENFARVLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60205 # 1izoA.137.89 read from T0547.t04.many.frag # found chain 1izoA in template set T0547 137 :RELINIGFI 1izoA 90 :SAHIHRKML Number of specific fragments extracted= 1 number of extra gaps= 0 total=60206 # 1qtwA.137.11 read from T0547.t04.many.frag # found chain 1qtwA in training set T0547 137 :RELINIGFI 1qtwA 12 :GGLANAAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60207 # 2bnlA.137.64 read from T0547.t04.many.frag # found chain 2bnlA in template set T0547 137 :RELINIGFI 2bnlA 65 :SQISELALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60208 # 2b4aA.137.25 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 137 :RELINIGFI 2b4aA 14 :SHATLIQYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=60209 # 1oltA.137.120 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 137 :RELINIGFI 1oltA 121 :AQISRLMKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60210 # 1xeaA.137.73 read from T0547.t04.many.frag # found chain 1xeaA in template set T0547 137 :RELINIGFI 1xeaA 74 :DVHSTLAAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60211 # 1o12A.137.72 read from T0547.t04.many.frag # found chain 1o12A in template set Warning: unaligning (T0547)R137 (1o12A)C61 because L (left) conformation "forbidden" or filtered. T0547 138 :ELINIGFI 1o12A 62 :DFSEMEEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=60212 # 2af4C.137.26 read from T0547.t04.many.frag # found chain 2af4C in template set T0547 137 :RELINIGFI 2af4C 27 :IRTLQAAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60213 # 8abp.137.68 read from T0547.t04.many.frag # found chain 8abp in training set T0547 137 :RELINIGFI 8abp 69 :KLGSAIVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60214 # 1qmeA.137.595 read from T0547.t04.many.frag # found chain 1qmeA in template set T0547 137 :RELINIGFI 1qmeA 644 :ISPGDLAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60215 # 1qo0D.137.22 read from T0547.t04.many.frag # found chain 1qo0D in template set T0547 137 :RELINIGFI 1qo0D 23 :EVSDALVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60216 # 1k0fA.137.196 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 137 :RELINIGFI 1k0fA 228 :HDMQELAAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60217 # 1p3dA.137.28 read from T0547.t04.many.frag # found chain 1p3dA in training set T0547 137 :RELINIGFI 1p3dA 29 :AGMSGIAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60218 # 1wdpA.137.69 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 137 :RELINIGFI 1wdpA 70 :RAYRSLLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60219 # 1pgjA.137.10 read from T0547.t04.many.frag # found chain 1pgjA in template set T0547 137 :RELINIGFI 1pgjA 11 :VMGANLALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60220 # 1vhh.137.123 read from T0547.t04.many.frag # found chain 1vhh in training set T0547 137 :RELINIGFI 1vhh 157 :SKYGMLARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60221 # 2av4A.137.55 read from T0547.t04.many.frag # found chain 2av4A in template set T0547 137 :RELINIGFI 2av4A 54 :PDCMKMDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60222 # 1zcjA.137.46 read from T0547.t04.many.frag # found chain 1zcjA in template set T0547 137 :RELINIGFI 1zcjA 306 :TMGRGIAIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60223 # 1dq3A.137.266 read from T0547.t04.many.frag # found chain 1dq3A in template set T0547 137 :RELINIGFI 1dq3A 267 :RLIEDVTHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=60224 # 1wb9A.137.430 read from T0547.t04.many.frag # found chain 1wb9A in template set T0547 137 :RELINIGFI 1wb9A 431 :EELDEWRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60225 # 1lyvA.137.102 read from T0547.t04.many.frag # found chain 1lyvA in training set T0547 137 :RELINIGFI 1lyvA 265 :SQLESHFRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=60226 # 2al2A.137.176 read from T0547.t04.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)R137 (2al2A)K177 because G (3-10) conformation "forbidden" or filtered. T0547 138 :ELINIGFI 2al2A 178 :TFAEALRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=60227 # 1zb1A.137.46 read from T0547.t04.many.frag # found chain 1zb1A in template set T0547 137 :RELINIGFI 1zb1A 42 :KATSELDHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60228 # 1ka9H.137.12 read from T0547.t04.many.frag # found chain 1ka9H in template set Warning: unaligning (T0547)E138 (1ka9H)N14 because L (left) conformation "forbidden" or filtered. T0547 137 :R 1ka9H 13 :G T0547 139 :LINIGFI 1ka9H 15 :LRSAAKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60230 1wduA expands to /projects/compbio/data/pdb/1wdu.pdb.gz 1wduA:# 1wduA.137.31 read from T0547.t04.many.frag # adding 1wduA to template set # found chain 1wduA in template set T0547 137 :RELINIGFI 1wduA 35 :LATAELAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60231 # 1pii.138.144 read from T0547.t04.many.frag # found chain 1pii in template set T0547 138 :ELINIGFIA 1pii 145 :QYRQLAAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60232 # 1h6dA.138.161 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 138 :ELINIGFIA 1h6dA 162 :LHAEFAIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60233 # 1gqiA.138.184 read from T0547.t04.many.frag # found chain 1gqiA in training set T0547 138 :ELINIGFIA 1gqiA 189 :RYTDYARIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60234 # 1zzmA.138.44 read from T0547.t04.many.frag # found chain 1zzmA in training set T0547 138 :ELINIGFIA 1zzmA 45 :NFARVLALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60235 # 1izoA.138.90 read from T0547.t04.many.frag # found chain 1izoA in template set T0547 138 :ELINIGFIA 1izoA 91 :AHIHRKMLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60236 # 1oi7A.138.75 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 138 :ELINIGFIA 1oi7A 76 :AAADAALEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60237 # 8abp.138.69 read from T0547.t04.many.frag # found chain 8abp in training set T0547 138 :ELINIGFIA 8abp 70 :LGSAIVAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60238 # 2bnlA.138.65 read from T0547.t04.many.frag # found chain 2bnlA in template set T0547 138 :ELINIGFIA 2bnlA 66 :QISELALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60239 # 1qtwA.138.12 read from T0547.t04.many.frag # found chain 1qtwA in training set T0547 138 :ELINIGFIA 1qtwA 13 :GLANAAIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60240 # 1wdpA.138.70 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 138 :ELINIGFIA 1wdpA 71 :AYRSLLQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60241 # 1qmeA.138.596 read from T0547.t04.many.frag # found chain 1qmeA in template set T0547 138 :ELINIGFIA 1qmeA 645 :SPGDLAEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60242 # 1xeaA.138.74 read from T0547.t04.many.frag # found chain 1xeaA in template set T0547 138 :ELINIGFIA 1xeaA 75 :VHSTLAAFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60243 # 2b4aA.138.26 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 138 :ELINIGFIA 2b4aA 15 :HATLIQYHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60244 # 1o12A.138.73 read from T0547.t04.many.frag # found chain 1o12A in template set T0547 138 :ELINIGFIA 1o12A 62 :DFSEMEEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60245 # 1pgjA.138.11 read from T0547.t04.many.frag # found chain 1pgjA in template set T0547 138 :ELINIGFIA 1pgjA 12 :MGANLALNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60246 # 1k0fA.138.197 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 138 :ELINIGFIA 1k0fA 229 :DMQELAAFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60247 # 1vhh.138.124 read from T0547.t04.many.frag # found chain 1vhh in training set T0547 138 :ELINIGFIA 1vhh 158 :KYGMLARLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60248 # 1gkpA.138.163 read from T0547.t04.many.frag # found chain 1gkpA in training set T0547 138 :ELINIGFIA 1gkpA 165 :EMYQTLRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60249 # 1oltA.138.121 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 138 :ELINIGFIA 1oltA 122 :QISRLMKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60250 # 1p3dA.138.29 read from T0547.t04.many.frag # found chain 1p3dA in training set T0547 138 :ELINIGFIA 1p3dA 30 :GMSGIAEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60251 # 2af4C.138.27 read from T0547.t04.many.frag # found chain 2af4C in template set T0547 138 :ELINIGFIA 2af4C 28 :RTLQAAAKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60252 # 1qo0D.138.23 read from T0547.t04.many.frag # found chain 1qo0D in template set T0547 138 :ELINIGFIA 1qo0D 24 :VSDALVLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60253 # 1zcjA.138.47 read from T0547.t04.many.frag # found chain 1zcjA in template set T0547 138 :ELINIGFIA 1zcjA 307 :MGRGIAISF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60254 1sedA expands to /projects/compbio/data/pdb/1sed.pdb.gz 1sedA:Skipped atom 796, because occupancy 0.480 <= existing 0.520 in 1sedA Skipped atom 800, because occupancy 0.480 <= existing 0.520 in 1sedA Skipped atom 802, because occupancy 0.480 <= existing 0.520 in 1sedA Skipped atom 804, because occupancy 0.500 <= existing 0.500 in 1sedA Skipped atom 810, because occupancy 0.460 <= existing 0.540 in 1sedA # 1sedA.138.85 read from T0547.t04.many.frag # adding 1sedA to template set # found chain 1sedA in template set T0547 138 :ELINIGFIA 1sedA 84 :DVHETIFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60255 # 1kwgA.138.14 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 138 :ELINIGFIA 1kwgA 15 :RWKEDARRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=60256 # 1uhvA.138.33 read from T0547.t04.many.frag # found chain 1uhvA in template set T0547 138 :ELINIGFIA 1uhvA 34 :EYIETLKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60257 # 1xgkA.138.16 read from T0547.t04.many.frag # found chain 1xgkA in training set T0547 138 :ELINIGFIA 1xgkA 17 :QGASLIRVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60258 # 2bduA.138.27 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 138 :ELINIGFIA 2bduA 28 :RVEEIICGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60259 # 2al2A.138.177 read from T0547.t04.many.frag # found chain 2al2A in template set T0547 138 :ELINIGFIA 2al2A 178 :TFAEALRIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60260 # 2f2hA.138.284 read from T0547.t04.many.frag # found chain 2f2hA in template set T0547 138 :ELINIGFIA 2f2hA 285 :TVNSFIDGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=60261 # 1pii.139.145 read from T0547.t04.many.frag # found chain 1pii in template set T0547 139 :LINIGFIAA 1pii 146 :YRQLAAVAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=60262 # 1gqiA.139.185 read from T0547.t04.many.frag # found chain 1gqiA in training set T0547 139 :LINIGFIAA 1gqiA 190 :YTDYARINA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60263 # 1zzmA.139.45 read from T0547.t04.many.frag # found chain 1zzmA in training set T0547 139 :LINIGFIAA 1zzmA 46 :FARVLALAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60264 # 8abp.139.70 read from T0547.t04.many.frag # found chain 8abp in training set T0547 139 :LINIGFIAA 8abp 71 :GSAIVAKAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60265 # 1h6dA.139.162 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 139 :LINIGFIAA 1h6dA 163 :HAEFAIRAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60266 # 1gkpA.139.164 read from T0547.t04.many.frag # found chain 1gkpA in training set T0547 139 :LINIGFIAA 1gkpA 166 :MYQTLRLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60267 # 1vhh.139.125 read from T0547.t04.many.frag # found chain 1vhh in training set T0547 139 :LINIGFIAA 1vhh 159 :YGMLARLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60268 # 1wdpA.139.71 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 139 :LINIGFIAA 1wdpA 72 :YRSLLQLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60269 # 1xeaA.139.75 read from T0547.t04.many.frag # found chain 1xeaA in template set T0547 139 :LINIGFIAA 1xeaA 76 :HSTLAAFFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60270 # 1p3dA.139.30 read from T0547.t04.many.frag # found chain 1p3dA in training set T0547 139 :LINIGFIAA 1p3dA 31 :MSGIAEILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60271 # 1izoA.139.91 read from T0547.t04.many.frag # found chain 1izoA in template set T0547 139 :LINIGFIAA 1izoA 92 :HIHRKMLFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60272 # 1oi7A.139.76 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 139 :LINIGFIAA 1oi7A 77 :AADAALEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60273 # 1c1dA.139.186 read from T0547.t04.many.frag # found chain 1c1dA in training set T0547 139 :LINIGFIAA 1c1dA 187 :GGSLASLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60274 # 2bnlA.139.66 read from T0547.t04.many.frag # found chain 2bnlA in template set T0547 139 :LINIGFIAA 2bnlA 67 :ISELALRAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60275 # 1qtwA.139.13 read from T0547.t04.many.frag # found chain 1qtwA in training set T0547 139 :LINIGFIAA 1qtwA 14 :LANAAIRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60276 # 1o12A.139.74 read from T0547.t04.many.frag # found chain 1o12A in template set T0547 139 :LINIGFIAA 1o12A 63 :FSEMEEFLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=60277 # 1qmeA.139.597 read from T0547.t04.many.frag # found chain 1qmeA in template set T0547 139 :LINIGFIAA 1qmeA 646 :PGDLAEELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60278 # 1k0fA.139.198 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 139 :LINIGFIAA 1k0fA 230 :MQELAAFIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60279 # 1kwgA.139.15 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 139 :LINIGFIAA 1kwgA 16 :WKEDARRMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60280 # 1pgjA.139.12 read from T0547.t04.many.frag # found chain 1pgjA in template set T0547 139 :LINIGFIAA 1pgjA 13 :GANLALNIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60281 # 1vjlA.139.124 read from T0547.t04.many.frag # found chain 1vjlA in template set T0547 139 :LINIGFIAA 1vjlA 113 :PSDAIILAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60282 # 1xgkA.139.17 read from T0547.t04.many.frag # found chain 1xgkA in training set T0547 139 :LINIGFIAA 1xgkA 18 :GASLIRVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60283 # 1l8aA.139.274 read from T0547.t04.many.frag # found chain 1l8aA in template set T0547 139 :LINIGFIAA 1l8aA 275 :INELEGIFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60284 # 1zcjA.139.48 read from T0547.t04.many.frag # found chain 1zcjA in template set T0547 139 :LINIGFIAA 1zcjA 308 :GRGIAISFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60285 # 1us0A.139.27 read from T0547.t04.many.frag # found chain 1us0A in training set T0547 139 :LINIGFIAA 1us0A 27 :VTEAVKVAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60286 # 2cygA.139.14 read from T0547.t04.many.frag # found chain 2cygA in training set T0547 139 :LINIGFIAA 2cygA 43 :PSEVVSLYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60287 # 2b4aA.139.27 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 139 :LINIGFIAA 2b4aA 16 :ATLIQYHLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60288 # 1byrA.139.69 read from T0547.t04.many.frag # found chain 1byrA in template set T0547 139 :LINIGFIAA 1byrA 70 :SIAAMNYIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60289 # 1vjoA.139.120 read from T0547.t04.many.frag # found chain 1vjoA in training set T0547 139 :LINIGFIAA 1vjoA 109 :GNRLVDMAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60290 # 1lyvA.139.104 read from T0547.t04.many.frag # found chain 1lyvA in training set T0547 139 :LINIGFIAA 1lyvA 267 :LESHFRMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60291 # 1h6dA.140.163 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 140 :INIGFIAAE 1h6dA 164 :AEFAIRAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60292 # 1pii.140.146 read from T0547.t04.many.frag # found chain 1pii in template set T0547 140 :INIGFIAAE 1pii 147 :RQLAAVAHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60293 # 1vhh.140.126 read from T0547.t04.many.frag # found chain 1vhh in training set T0547 140 :INIGFIAAE 1vhh 160 :GMLARLAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60294 # 1p3dA.140.31 read from T0547.t04.many.frag # found chain 1p3dA in training set T0547 140 :INIGFIAAE 1p3dA 32 :SGIAEILLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60295 # 1c1dA.140.187 read from T0547.t04.many.frag # found chain 1c1dA in training set T0547 140 :INIGFIAAE 1c1dA 188 :GSLASLAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60296 # 1oi7A.140.77 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 140 :INIGFIAAE 1oi7A 78 :ADAALEAAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=60297 # 1gqiA.140.186 read from T0547.t04.many.frag # found chain 1gqiA in training set T0547 140 :INIGFIAAE 1gqiA 191 :TDYARINAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60298 # 1qtwA.140.14 read from T0547.t04.many.frag # found chain 1qtwA in training set T0547 140 :INIGFIAAE 1qtwA 15 :ANAAIRAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60299 # 1gkpA.140.165 read from T0547.t04.many.frag # found chain 1gkpA in training set T0547 140 :INIGFIAAE 1gkpA 167 :YQTLRLAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60300 # 8abp.140.71 read from T0547.t04.many.frag # found chain 8abp in training set T0547 140 :INIGFIAAE 8abp 72 :SAIVAKARG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60301 # 1xeaA.140.76 read from T0547.t04.many.frag # found chain 1xeaA in template set T0547 140 :INIGFIAAE 1xeaA 77 :STLAAFFLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=60302 # 1o12A.140.75 read from T0547.t04.many.frag # found chain 1o12A in template set T0547 140 :INIGFIAAE 1o12A 64 :SEMEEFLYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60303 # 1pgjA.140.13 read from T0547.t04.many.frag # found chain 1pgjA in template set T0547 140 :INIGFIAAE 1pgjA 14 :ANLALNIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60304 # 1zcjA.140.49 read from T0547.t04.many.frag # found chain 1zcjA in template set T0547 140 :INIGFIAAE 1zcjA 309 :RGIAISFAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60305 # 1zzmA.140.46 read from T0547.t04.many.frag # found chain 1zzmA in training set T0547 140 :INIGFIAAE 1zzmA 47 :ARVLALAEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60306 # 2bnlA.140.67 read from T0547.t04.many.frag # found chain 2bnlA in template set T0547 140 :INIGFIAAE 2bnlA 68 :SELALRAVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60307 # 1wdpA.140.72 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 140 :INIGFIAAE 1wdpA 73 :RSLLQLVQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60308 # 1vjlA.140.125 read from T0547.t04.many.frag # found chain 1vjlA in template set T0547 140 :INIGFIAAE 1vjlA 114 :SDAIILAVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60309 # 1xgkA.140.18 read from T0547.t04.many.frag # found chain 1xgkA in training set T0547 140 :INIGFIAAE 1xgkA 19 :ASLIRVAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60310 # 1jayA.140.13 read from T0547.t04.many.frag # found chain 1jayA in training set T0547 140 :INIGFIAAE 1jayA 14 :KGLALRLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60311 # 1us0A.140.28 read from T0547.t04.many.frag # found chain 1us0A in training set T0547 140 :INIGFIAAE 1us0A 28 :TEAVKVAID Number of specific fragments extracted= 1 number of extra gaps= 0 total=60312 # 1kwgA.140.16 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 140 :INIGFIAAE 1kwgA 17 :KEDARRMRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60313 # 1izoA.140.92 read from T0547.t04.many.frag # found chain 1izoA in template set T0547 140 :INIGFIAAE 1izoA 93 :IHRKMLFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60314 # 1qmeA.140.598 read from T0547.t04.many.frag # found chain 1qmeA in template set T0547 140 :INIGFIAAE 1qmeA 647 :GDLAEELRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60315 # 1k0fA.140.199 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 140 :INIGFIAAE 1k0fA 231 :QELAAFIAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60316 # 2b4aA.140.28 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 140 :INIGFIAAE 2b4aA 17 :TLIQYHLNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60317 # 1gsoA.140.55 read from T0547.t04.many.frag # found chain 1gsoA in training set T0547 140 :INIGFIAAE 1gsoA 54 :PALLDFAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60318 # 1q5xA.140.75 read from T0547.t04.many.frag # found chain 1q5xA in template set T0547 140 :INIGFIAAE 1q5xA 76 :AELARLAVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60319 # 1l8aA.140.275 read from T0547.t04.many.frag # found chain 1l8aA in template set T0547 140 :INIGFIAAE 1l8aA 276 :NELEGIFEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60320 # 1w77A.140.83 read from T0547.t04.many.frag # found chain 1w77A in template set T0547 140 :INIGFIAAE 1w77A 158 :QDSVYSGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60321 # 1c1dA.141.188 read from T0547.t04.many.frag # found chain 1c1dA in training set T0547 141 :NIGFIAAEM 1c1dA 189 :SLASLAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60322 # 1h6dA.141.164 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 141 :NIGFIAAEM 1h6dA 165 :EFAIRAFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60323 # 1oi7A.141.78 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 141 :NIGFIAAEM 1oi7A 79 :DAALEAAHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60324 # 1qtwA.141.15 read from T0547.t04.many.frag # found chain 1qtwA in training set T0547 141 :NIGFIAAEM 1qtwA 16 :NAAIRAAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60325 # 1vhh.141.127 read from T0547.t04.many.frag # found chain 1vhh in training set T0547 141 :NIGFIAAEM 1vhh 161 :MLARLAVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60326 # 1pii.141.147 read from T0547.t04.many.frag # found chain 1pii in template set T0547 141 :NIGFIAAEM 1pii 148 :QLAAVAHSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60327 # 1gkpA.141.166 read from T0547.t04.many.frag # found chain 1gkpA in training set T0547 141 :NIGFIAAEM 1gkpA 168 :QTLRLAKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60328 # 2bnlA.141.68 read from T0547.t04.many.frag # found chain 2bnlA in template set T0547 141 :NIGFIAAEM 2bnlA 69 :ELALRAVQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60329 # 1xgkA.141.19 read from T0547.t04.many.frag # found chain 1xgkA in training set T0547 141 :NIGFIAAEM 1xgkA 20 :SLIRVAAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60330 # 1o12A.141.76 read from T0547.t04.many.frag # found chain 1o12A in template set T0547 141 :NIGFIAAEM 1o12A 65 :EMEEFLYSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60331 # 1p3dA.141.32 read from T0547.t04.many.frag # found chain 1p3dA in training set T0547 141 :NIGFIAAEM 1p3dA 33 :GIAEILLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60332 # 1vjoA.141.122 read from T0547.t04.many.frag # found chain 1vjoA in training set T0547 141 :NIGFIAAEM 1vjoA 111 :RLVDMAGRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=60333 # 1gsoA.141.56 read from T0547.t04.many.frag # found chain 1gsoA in training set T0547 141 :NIGFIAAEM 1gsoA 55 :ALLDFAQNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60334 # 1xeaA.141.77 read from T0547.t04.many.frag # found chain 1xeaA in template set T0547 141 :NIGFIAAEM 1xeaA 78 :TLAAFFLHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60335 # 1us0A.141.29 read from T0547.t04.many.frag # found chain 1us0A in training set T0547 141 :NIGFIAAEM 1us0A 29 :EAVKVAIDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60336 # 8abp.141.72 read from T0547.t04.many.frag # found chain 8abp in training set T0547 141 :NIGFIAAEM 8abp 73 :AIVAKARGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=60337 # 1q5xA.141.76 read from T0547.t04.many.frag # found chain 1q5xA in template set T0547 141 :NIGFIAAEM 1q5xA 77 :ELARLAVQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60338 # 1wwpA.141.57 read from T0547.t04.many.frag # found chain 1wwpA in template set T0547 141 :NIGFIAAEM 1wwpA 58 :GVIRLAREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60339 # 1pgjA.141.14 read from T0547.t04.many.frag # found chain 1pgjA in template set T0547 141 :NIGFIAAEM 1pgjA 15 :NLALNIAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60340 # 1wdpA.141.73 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 141 :NIGFIAAEM 1wdpA 74 :SLLQLVQEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=60341 # 1vjlA.141.126 read from T0547.t04.many.frag # found chain 1vjlA in template set T0547 141 :NIGFIAAEM 1vjlA 115 :DAIILAVKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60342 # 1gqiA.141.187 read from T0547.t04.many.frag # found chain 1gqiA in training set T0547 141 :NIGFIAAEM 1gqiA 192 :DYARINASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60343 # 1kwgA.141.17 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 141 :NIGFIAAEM 1kwgA 18 :EDARRMREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60344 # 1l6rA.141.28 read from T0547.t04.many.frag # found chain 1l6rA in training set T0547 141 :NIGFIAAEM 1l6rA 26 :ESIRSAEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60345 # 1z0wA.141.136 read from T0547.t04.many.frag # found chain 1z0wA in training set T0547 141 :NIGFIAAEM 1z0wA 551 :QKIEAAIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60346 # 1zcjA.141.50 read from T0547.t04.many.frag # found chain 1zcjA in template set T0547 141 :NIGFIAAEM 1zcjA 310 :GIAISFARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60347 # 1uc2A.141.149 read from T0547.t04.many.frag # found chain 1uc2A in template set T0547 141 :NIGFIAAEM 1uc2A 150 :DGAKWAVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60348 1tvlA expands to /projects/compbio/data/pdb/1tvl.pdb.gz 1tvlA:# 1tvlA.141.42 read from T0547.t04.many.frag # adding 1tvlA to template set # found chain 1tvlA in template set T0547 141 :NIGFIAAEM 1tvlA 41 :KKAQTAEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60349 # 1zzmA.141.47 read from T0547.t04.many.frag # found chain 1zzmA in training set T0547 141 :NIGFIAAEM 1zzmA 48 :RVLALAENY Number of specific fragments extracted= 1 number of extra gaps= 0 total=60350 # 1zb1A.141.50 read from T0547.t04.many.frag # found chain 1zb1A in template set T0547 141 :NIGFIAAEM 1zb1A 46 :ELDHLRNNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60351 # 1c1dA.142.189 read from T0547.t04.many.frag # found chain 1c1dA in training set T0547 142 :IGFIAAEMG 1c1dA 190 :LASLAAEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60352 # 1qtwA.142.16 read from T0547.t04.many.frag # found chain 1qtwA in training set T0547 142 :IGFIAAEMG 1qtwA 17 :AAIRAAEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=60353 # 1oi7A.142.79 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 142 :IGFIAAEMG 1oi7A 80 :AALEAAHAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60354 # 1h6dA.142.165 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 142 :IGFIAAEMG 1h6dA 166 :FAIRAFKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60355 # 1pii.142.148 read from T0547.t04.many.frag # found chain 1pii in template set T0547 142 :IGFIAAEMG 1pii 149 :LAAVAHSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60356 # 1vhh.142.128 read from T0547.t04.many.frag # found chain 1vhh in training set T0547 142 :IGFIAAEMG 1vhh 162 :LARLAVEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60357 # 1gkpA.142.167 read from T0547.t04.many.frag # found chain 1gkpA in training set T0547 142 :IGFIAAEMG 1gkpA 169 :TLRLAKELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60358 # 1p3dA.142.33 read from T0547.t04.many.frag # found chain 1p3dA in training set T0547 142 :IGFIAAEMG 1p3dA 34 :IAEILLNEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60359 # 1xgkA.142.20 read from T0547.t04.many.frag # found chain 1xgkA in training set T0547 142 :IGFIAAEMG 1xgkA 21 :LIRVAAAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60360 # 1pgjA.142.15 read from T0547.t04.many.frag # found chain 1pgjA in template set T0547 142 :IGFIAAEMG 1pgjA 16 :LALNIAEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60361 # 1gsoA.142.57 read from T0547.t04.many.frag # found chain 1gsoA in training set T0547 142 :IGFIAAEMG 1gsoA 56 :LLDFAQNEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60362 # 1xeaA.142.78 read from T0547.t04.many.frag # found chain 1xeaA in template set T0547 142 :IGFIAAEMG 1xeaA 79 :LAAFFLHLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60363 # 1vjoA.142.123 read from T0547.t04.many.frag # found chain 1vjoA in training set T0547 142 :IGFIAAEMG 1vjoA 112 :LVDMAGRYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60364 # 2bnlA.142.69 read from T0547.t04.many.frag # found chain 2bnlA in template set T0547 142 :IGFIAAEMG 2bnlA 70 :LALRAVQIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60365 # 8abp.142.73 read from T0547.t04.many.frag # found chain 8abp in training set T0547 142 :IGFIAAEMG 8abp 74 :IVAKARGYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=60366 # 1us0A.142.30 read from T0547.t04.many.frag # found chain 1us0A in training set T0547 142 :IGFIAAEMG 1us0A 30 :AVKVAIDVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60367 # 1o12A.142.77 read from T0547.t04.many.frag # found chain 1o12A in template set T0547 142 :IGFIAAEMG 1o12A 66 :MEEFLYSQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60368 # 1q5xA.142.77 read from T0547.t04.many.frag # found chain 1q5xA in template set T0547 142 :IGFIAAEMG 1q5xA 78 :LARLAVQNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60369 # 1vjlA.142.127 read from T0547.t04.many.frag # found chain 1vjlA in template set T0547 142 :IGFIAAEMG 1vjlA 116 :AIILAVKTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60370 # 1wwpA.142.58 read from T0547.t04.many.frag # found chain 1wwpA in template set T0547 142 :IGFIAAEMG 1wwpA 59 :VIRLAREVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60371 # 1wdpA.142.74 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 142 :IGFIAAEMG 1wdpA 75 :LLQLVQECG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60372 # 1zcjA.142.51 read from T0547.t04.many.frag # found chain 1zcjA in template set T0547 142 :IGFIAAEMG 1zcjA 311 :IAISFARVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60373 1u7zA expands to /projects/compbio/data/pdb/1u7z.pdb.gz 1u7zA:# 1u7zA.142.39 read from T0547.t04.many.frag # adding 1u7zA to template set # found chain 1u7zA in template set T0547 142 :IGFIAAEMG 1u7zA 220 :IAAAAARRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60374 # 1z0wA.142.137 read from T0547.t04.many.frag # found chain 1z0wA in training set T0547 142 :IGFIAAEMG 1z0wA 552 :KIEAAIQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60375 # 1kwgA.142.18 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 142 :IGFIAAEMG 1kwgA 19 :DARRMREAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60376 # 1l6rA.142.29 read from T0547.t04.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)M149 (1l6rA)K34 because G (3-10) conformation "forbidden" or filtered. T0547 142 :IGFIAAE 1l6rA 27 :SIRSAEK T0547 150 :G 1l6rA 35 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=60378 # 1wduA.142.36 read from T0547.t04.many.frag # found chain 1wduA in template set T0547 142 :IGFIAAEMG 1wduA 40 :LAIEAATRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60379 # 1vqoN.142.118 read from T0547.t04.many.frag # found chain 1vqoN in template set T0547 142 :IGFIAAEMG 1vqoN 118 :IQEGAIDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60380 # 1xdpA.142.383 read from T0547.t04.many.frag # found chain 1xdpA in template set T0547 142 :IGFIAAEMG 1xdpA 385 :SMIHAAHNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60381 # 1tvlA.142.43 read from T0547.t04.many.frag # found chain 1tvlA in template set T0547 142 :IGFIAAEMG 1tvlA 42 :KAQTAEKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60382 # 1qtwA.143.17 read from T0547.t04.many.frag # found chain 1qtwA in training set T0547 143 :GFIAAEMGH 1qtwA 18 :AIRAAEIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60383 # 1oi7A.143.80 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 143 :GFIAAEMGH 1oi7A 81 :ALEAAHAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60384 # 1xeaA.143.79 read from T0547.t04.many.frag # found chain 1xeaA in template set T0547 143 :GFIAAEMGH 1xeaA 80 :AAFFLHLGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60385 # 1h6dA.143.166 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 143 :GFIAAEMGH 1h6dA 167 :AIRAFKAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60386 # 1c1dA.143.190 read from T0547.t04.many.frag # found chain 1c1dA in training set T0547 143 :GFIAAEMGH 1c1dA 191 :ASLAAEAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60387 # 1l6rA.143.30 read from T0547.t04.many.frag # found chain 1l6rA in training set T0547 143 :GFIAAEMGH 1l6rA 28 :IRSAEKKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60388 # 1pgjA.143.16 read from T0547.t04.many.frag # found chain 1pgjA in template set Warning: unaligning (T0547)M149 (1pgjA)K23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (1pgjA)F25 because P (beta_P) conformation "forbidden" or filtered. T0547 143 :GFIAAE 1pgjA 17 :ALNIAE T0547 150 :G 1pgjA 24 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=60390 # 1pii.143.149 read from T0547.t04.many.frag # found chain 1pii in template set T0547 143 :GFIAAEMGH 1pii 150 :AAVAHSLEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=60391 # 1gkpA.143.168 read from T0547.t04.many.frag # found chain 1gkpA in training set T0547 143 :GFIAAEMGH 1gkpA 170 :LRLAKELGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60392 # 1xdpA.143.384 read from T0547.t04.many.frag # found chain 1xdpA in template set T0547 143 :GFIAAEMGH 1xdpA 386 :MIHAAHNGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60393 # 1xgkA.143.21 read from T0547.t04.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)H151 (1xgkA)H30 because P (beta_P) conformation "forbidden" or filtered. T0547 143 :GFIAAEMG 1xgkA 22 :IRVAAAVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=60394 # 1zxxA.143.108 read from T0547.t04.many.frag # found chain 1zxxA in template set Warning: unaligning (T0547)H151 (1zxxA)F117 because D (zeta) conformation "forbidden" or filtered. T0547 143 :GFIAAEMG 1zxxA 109 :ALQLTRHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=60395 # 1ccwA.143.23 read from T0547.t04.many.frag # found chain 1ccwA in training set T0547 143 :GFIAAEMGH 1ccwA 24 :DHAFTNAGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60396 # 1wdpA.143.75 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 143 :GFIAAEMGH 1wdpA 76 :LQLVQECGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60397 # 1ynpA.143.53 read from T0547.t04.many.frag # found chain 1ynpA in training set T0547 143 :GFIAAEMGH 1ynpA 34 :MDEVLELGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60398 # 1vhh.143.129 read from T0547.t04.many.frag # found chain 1vhh in training set T0547 143 :GFIAAEMGH 1vhh 163 :ARLAVEAGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60399 # 1lyvA.143.108 read from T0547.t04.many.frag # found chain 1lyvA in training set T0547 143 :GFIAAEMGH 1lyvA 271 :FRMLAENRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60400 # 1byrA.143.73 read from T0547.t04.many.frag # found chain 1byrA in template set T0547 143 :GFIAAEMGH 1byrA 74 :MNYIANSGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60401 # 1u7zA.143.40 read from T0547.t04.many.frag # found chain 1u7zA in template set T0547 143 :GFIAAEMGH 1u7zA 221 :AAAAARRGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60402 # 1us0A.143.31 read from T0547.t04.many.frag # found chain 1us0A in training set T0547 143 :GFIAAEMGH 1us0A 31 :VKVAIDVGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=60403 # 1k0fA.143.202 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 143 :GFIAAEMGH 1k0fA 234 :AAFIAQRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60404 # 1vjoA.143.124 read from T0547.t04.many.frag # found chain 1vjoA in training set T0547 143 :GFIAAEMGH 1vjoA 113 :VDMAGRYGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60405 # 1q5xA.143.78 read from T0547.t04.many.frag # found chain 1q5xA in template set Warning: unaligning (T0547)H151 (1q5xA)W87 because P (beta_P) conformation "forbidden" or filtered. T0547 143 :GFIAAEMG 1q5xA 79 :ARLAVQNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=60406 # 1gsoA.143.58 read from T0547.t04.many.frag # found chain 1gsoA in training set T0547 143 :GFIAAEMGH 1gsoA 57 :LDFAQNEKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60407 # 1kwgA.143.19 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 143 :GFIAAEMGH 1kwgA 20 :ARRMREAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60408 # 1p4cA.143.141 read from T0547.t04.many.frag # found chain 1p4cA in training set T0547 143 :GFIAAEMGH 1p4cA 142 :VLKALHTGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=60409 # 1y9iA.143.14 read from T0547.t04.many.frag # found chain 1y9iA in training set T0547 143 :GFIAAEMGH 1y9iA 15 :RSWLIERGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60410 # 1y5mA.143.34 read from T0547.t04.many.frag # found chain 1y5mA in template set T0547 143 :GFIAAEMGH 1y5mA 51 :AYHLSKMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60411 # 1vqoN.143.119 read from T0547.t04.many.frag # found chain 1vqoN in template set T0547 143 :GFIAAEMGH 1vqoN 119 :QEGAIDAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60412 # 2bnlA.143.70 read from T0547.t04.many.frag # found chain 2bnlA in template set T0547 143 :GFIAAEMGH 2bnlA 71 :ALRAVQIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60413 # 1ccwA.144.24 read from T0547.t04.many.frag # found chain 1ccwA in training set T0547 144 :FIAAEMGHN 1ccwA 25 :HAFTNAGFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60414 # 1pii.144.150 read from T0547.t04.many.frag # found chain 1pii in template set T0547 144 :FIAAEMGHN 1pii 151 :AVAHSLEMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60415 # 1vjoA.144.125 read from T0547.t04.many.frag # found chain 1vjoA in training set T0547 144 :FIAAEMGHN 1vjoA 114 :DMAGRYGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=60416 # 1c1dA.144.191 read from T0547.t04.many.frag # found chain 1c1dA in training set Warning: unaligning (T0547)H151 (1c1dA)A199 because P (beta_P) conformation "forbidden" or filtered. T0547 144 :FIAAEMG 1c1dA 192 :SLAAEAG T0547 152 :N 1c1dA 200 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=60418 # 1y9iA.144.15 read from T0547.t04.many.frag # found chain 1y9iA in training set T0547 144 :FIAAEMGHN 1y9iA 16 :SWLIERGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60419 # 1qtwA.144.18 read from T0547.t04.many.frag # found chain 1qtwA in training set T0547 144 :FIAAEMGHN 1qtwA 19 :IRAAEIDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60420 # 1eswA.144.200 read from T0547.t04.many.frag # found chain 1eswA in template set T0547 144 :FIAAEMGHN 1eswA 201 :AEAEALGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60421 # 1gsoA.144.59 read from T0547.t04.many.frag # found chain 1gsoA in training set T0547 144 :FIAAEMGHN 1gsoA 58 :DFAQNEKID Number of specific fragments extracted= 1 number of extra gaps= 0 total=60422 # 1ynpA.144.54 read from T0547.t04.many.frag # found chain 1ynpA in training set T0547 144 :FIAAEMGHN 1ynpA 35 :DEVLELGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60423 # 1xeaA.144.80 read from T0547.t04.many.frag # found chain 1xeaA in template set T0547 144 :FIAAEMGHN 1xeaA 81 :AFFLHLGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=60424 # 1oi7A.144.81 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 144 :FIAAEMGHN 1oi7A 82 :LEAAHAGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=60425 # 1xgkA.144.22 read from T0547.t04.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)M149 (1xgkA)V28 because G (3-10) conformation "forbidden" or filtered. T0547 144 :FIAAE 1xgkA 23 :RVAAA T0547 150 :GHN 1xgkA 29 :GHH Number of specific fragments extracted= 2 number of extra gaps= 1 total=60427 # 1zxxA.144.109 read from T0547.t04.many.frag # found chain 1zxxA in template set T0547 144 :FIAAEMGHN 1zxxA 110 :LQLTRHGFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60428 # 1l6rA.144.31 read from T0547.t04.many.frag # found chain 1l6rA in training set T0547 144 :FIAAEMGHN 1l6rA 29 :RSAEKKGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60429 # 1y5mA.144.35 read from T0547.t04.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)N152 (1y5mA)H60 because P (beta_P) conformation "forbidden" or filtered. T0547 144 :FIAAEMGH 1y5mA 52 :YHLSKMGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=60430 # 1wcwA.144.147 read from T0547.t04.many.frag # found chain 1wcwA in training set T0547 144 :FIAAEMGHN 1wcwA 148 :NALAERGYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60431 # 1vhtA.144.21 read from T0547.t04.many.frag # found chain 1vhtA in training set T0547 144 :FIAAEMGHN 1vhtA 20 :NAFADLGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60432 # 1h6dA.144.167 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 144 :FIAAEMGHN 1h6dA 168 :IRAFKAGKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=60433 # 8abp.144.75 read from T0547.t04.many.frag # found chain 8abp in training set T0547 144 :FIAAEMGHN 8abp 76 :AKARGYDMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60434 # 1u7zA.144.41 read from T0547.t04.many.frag # found chain 1u7zA in template set T0547 144 :FIAAEMGHN 1u7zA 222 :AAAARRGAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60435 # 1m1nA.144.238 read from T0547.t04.many.frag # found chain 1m1nA in training set T0547 144 :FIAAEMGHN 1m1nA 240 :ILLEEMGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60436 # 1wdpA.144.76 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 144 :FIAAEMGHN 1wdpA 77 :QLVQECGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60437 # 1byrA.144.74 read from T0547.t04.many.frag # found chain 1byrA in template set T0547 144 :FIAAEMGHN 1byrA 75 :NYIANSGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=60438 # 1lyvA.144.109 read from T0547.t04.many.frag # found chain 1lyvA in training set T0547 144 :FIAAEMGHN 1lyvA 272 :RMLAENRTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=60439 # 1z0wA.144.139 read from T0547.t04.many.frag # found chain 1z0wA in training set T0547 144 :FIAAEMGHN 1z0wA 554 :EAAIQAGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60440 # 1xdpA.144.385 read from T0547.t04.many.frag # found chain 1xdpA in template set Warning: unaligning (T0547)N152 (1xdpA)K395 because P (beta_P) conformation "forbidden" or filtered. T0547 144 :FIAAEMGH 1xdpA 387 :IHAAHNGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=60441 # 1pgjA.144.17 read from T0547.t04.many.frag # found chain 1pgjA in template set T0547 144 :FIAAEMGHN 1pgjA 18 :LNIAEKGFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60442 # 1p4cA.144.142 read from T0547.t04.many.frag # found chain 1p4cA in training set T0547 144 :FIAAEMGHN 1p4cA 143 :LKALHTGYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60443 # 1kwgA.144.20 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 144 :FIAAEMGHN 1kwgA 21 :RRMREAGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60444 # 1y1pA.144.28 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 144 :FIAAEMGHN 1y1pA 30 :EQLLEHGYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60445 # 1pgjA.145.18 read from T0547.t04.many.frag # found chain 1pgjA in template set T0547 145 :IAAEMGHNI 1pgjA 19 :NIAEKGFKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60446 # 1p4cA.145.143 read from T0547.t04.many.frag # found chain 1p4cA in training set T0547 145 :IAAEMGHNI 1p4cA 144 :KALHTGYTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60447 # 1c1dA.145.192 read from T0547.t04.many.frag # found chain 1c1dA in training set Warning: unaligning (T0547)H151 (1c1dA)A199 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAEMG 1c1dA 193 :LAAEAG T0547 152 :NI 1c1dA 200 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60449 # 1u7zA.145.42 read from T0547.t04.many.frag # found chain 1u7zA in template set T0547 145 :IAAEMGHNI 1u7zA 223 :AAARRGANV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60450 # 1t0bA.145.39 read from T0547.t04.many.frag # found chain 1t0bA in training set T0547 145 :IAAEMGHNI 1t0bA 37 :YLAEAGFDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60451 # 1ynpA.145.55 read from T0547.t04.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)N152 (1ynpA)N43 because G (3-10) conformation "forbidden" or filtered. T0547 145 :IAAEMGH 1ynpA 36 :EVLELGI T0547 153 :I 1ynpA 44 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=60453 # 1y1pA.145.29 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 145 :IAAEMGHNI 1y1pA 31 :QLLEHGYKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60454 # 1zxxA.145.110 read from T0547.t04.many.frag # found chain 1zxxA in template set T0547 145 :IAAEMGHNI 1zxxA 111 :QLTRHGFNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60455 # 1xdpA.145.386 read from T0547.t04.many.frag # found chain 1xdpA in template set T0547 145 :IAAEMGHNI 1xdpA 388 :HAAHNGKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60456 # 1oi7A.145.82 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 145 :IAAEMGHNI 1oi7A 83 :EAAHAGIPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60457 # 1kwgA.145.21 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 145 :IAAEMGHNI 1kwgA 22 :RMREAGLSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=60458 # 1y5mA.145.36 read from T0547.t04.many.frag # found chain 1y5mA in template set T0547 145 :IAAEMGHNI 1y5mA 53 :HLSKMGAHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60459 # 1vk4A.145.44 read from T0547.t04.many.frag # found chain 1vk4A in template set Warning: unaligning (T0547)N152 (1vk4A)K40 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAEMGH 1vk4A 33 :TSSLLGV T0547 153 :I 1vk4A 41 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=60461 # 1vjzA.145.43 read from T0547.t04.many.frag # found chain 1vjzA in template set Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE in next template residue (1vjzA)V41 T0547 145 :IAAEMGHN 1vjzA 32 :WMAQWDFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=60462 # 1eswA.145.201 read from T0547.t04.many.frag # found chain 1eswA in template set T0547 145 :IAAEMGHNI 1eswA 202 :EAEALGIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60463 # 1ccwA.145.25 read from T0547.t04.many.frag # found chain 1ccwA in training set T0547 145 :IAAEMGHNI 1ccwA 26 :AFTNAGFNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60464 # 1z0wA.145.140 read from T0547.t04.many.frag # found chain 1z0wA in training set T0547 145 :IAAEMGHNI 1z0wA 555 :AAIQAGLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60465 # 1l6rA.145.32 read from T0547.t04.many.frag # found chain 1l6rA in training set T0547 145 :IAAEMGHNI 1l6rA 30 :SAEKKGLTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60466 # 1zk4A.145.24 read from T0547.t04.many.frag # found chain 1zk4A in training set T0547 145 :IAAEMGHNI 1zk4A 25 :KFVEEGAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60467 # 1gsoA.145.60 read from T0547.t04.many.frag # found chain 1gsoA in training set T0547 145 :IAAEMGHNI 1gsoA 59 :FAQNEKIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60468 # 1vhyA.145.99 read from T0547.t04.many.frag # found chain 1vhyA in template set T0547 145 :IAAEMGHNI 1vhyA 98 :KSVELGVNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60469 # 1xeaA.145.81 read from T0547.t04.many.frag # found chain 1xeaA in template set Warning: unaligning (T0547)N152 (1xeaA)P89 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAEMGH 1xeaA 82 :FFLHLGI T0547 153 :I 1xeaA 90 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=60471 # 1m65A.145.25 read from T0547.t04.many.frag # found chain 1m65A in training set T0547 145 :IAAEMGHNI 1m65A 26 :QAKQKGIKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60472 # 1vhtA.145.22 read from T0547.t04.many.frag # found chain 1vhtA in training set Warning: unaligning (T0547)N152 (1vhtA)N28 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAEMGH 1vhtA 21 :AFADLGI T0547 153 :I 1vhtA 29 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=60474 # 1vi6A.145.132 read from T0547.t04.many.frag # found chain 1vi6A in template set T0547 145 :IAAEMGHNI 1vi6A 132 :EATAVGIPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60475 # 1nytA.145.136 read from T0547.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)M149 (1nytA)L141 because G (3-10) conformation "forbidden" or filtered. T0547 145 :IAAE 1nytA 137 :PLLS T0547 150 :GHNI 1nytA 142 :DCAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60477 # 1qtwA.145.19 read from T0547.t04.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)H151 (1qtwA)A26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I153 (1qtwA)A28 because Y (epsilon') conformation "forbidden" or filtered. T0547 145 :IAAEMG 1qtwA 20 :RAAEID T0547 152 :N 1qtwA 27 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=60479 # 1xgkA.145.23 read from T0547.t04.many.frag # found chain 1xgkA in training set T0547 145 :IAAEMGHNI 1xgkA 24 :VAAAVGHHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60480 # 1us0A.145.33 read from T0547.t04.many.frag # found chain 1us0A in training set T0547 145 :IAAEMGHNI 1us0A 33 :VAIDVGYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=60481 # 8abp.145.76 read from T0547.t04.many.frag # found chain 8abp in training set T0547 145 :IAAEMGHNI 8abp 77 :KARGYDMKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60482 # 1vk4A.146.45 read from T0547.t04.many.frag # found chain 1vk4A in template set T0547 146 :AAEMGHNIT 1vk4A 34 :SSLLGVKTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60483 # 1hdoA.146.22 read from T0547.t04.many.frag # found chain 1hdoA in training set T0547 146 :AAEMGHNIT 1hdoA 23 :AVQAGYEVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60484 # 1ywfA.146.63 read from T0547.t04.many.frag # found chain 1ywfA in template set Warning: unaligning (T0547)N152 (1ywfA)T50 because G (3-10) conformation "forbidden" or filtered. T0547 146 :AAEMGH 1ywfA 44 :LRRLGI T0547 153 :IT 1ywfA 51 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60486 # 1m65A.146.26 read from T0547.t04.many.frag # found chain 1m65A in training set T0547 146 :AAEMGHNIT 1m65A 27 :AKQKGIKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60487 # 1t0bA.146.40 read from T0547.t04.many.frag # found chain 1t0bA in training set Warning: unaligning (T0547)T154 (1t0bA)A46 because Y (epsilon') conformation "forbidden" or filtered. T0547 146 :AAEMGHNI 1t0bA 38 :LAEAGFDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=60488 # 1xdpA.146.387 read from T0547.t04.many.frag # found chain 1xdpA in template set T0547 146 :AAEMGHNIT 1xdpA 389 :AAHNGKKVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60489 # 1g60A.146.229 read from T0547.t04.many.frag # found chain 1g60A in template set T0547 146 :AAEMGHNIT 1g60A 230 :AKKLGRNFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60490 # 1pgjA.146.19 read from T0547.t04.many.frag # found chain 1pgjA in template set T0547 146 :AAEMGHNIT 1pgjA 20 :IAEKGFKVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60491 # 1usgA.146.64 read from T0547.t04.many.frag # found chain 1usgA in training set T0547 146 :AAEMGHNIT 1usgA 65 :IVNDGIKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60492 # 1n4wA.146.23 read from T0547.t04.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)H151 (1n4wA)V34 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAEMG 1n4wA 29 :LGEAG T0547 152 :NIT 1n4wA 35 :QTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60494 1ykjA expands to /projects/compbio/data/pdb/1ykj.pdb.gz 1ykjA:# 1ykjA.146.20 read from T0547.t04.many.frag # adding 1ykjA to template set # found chain 1ykjA in template set T0547 146 :AAEMGHNIT 1ykjA 1021 :LHKAGIDNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60495 # 1j0dA.146.87 read from T0547.t04.many.frag # found chain 1j0dA in template set T0547 146 :AAEMGHNIT 1j0dA 88 :AAKLGKKCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60496 # 1p3dA.146.37 read from T0547.t04.many.frag # found chain 1p3dA in training set T0547 146 :AAEMGHNIT 1p3dA 38 :LLNEGYQIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60497 # 2bzgA.146.65 read from T0547.t04.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)N152 (2bzgA)S85 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAEMGH 2bzgA 79 :FADRGH T0547 153 :IT 2bzgA 86 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60499 # 1ks9A.146.18 read from T0547.t04.many.frag # found chain 1ks9A in training set Warning: unaligning (T0547)E148 because of BadResidue code BAD_PEPTIDE in next template residue (1ks9A)Q22 Warning: unaligning (T0547)M149 because of BadResidue code BAD_PEPTIDE at template residue (1ks9A)Q22 T0547 146 :AA 1ks9A 19 :LC T0547 150 :GHNIT 1ks9A 23 :GHEVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=60501 # 1l6rA.146.33 read from T0547.t04.many.frag # found chain 1l6rA in training set T0547 146 :AAEMGHNIT 1l6rA 31 :AEKKGLTVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60502 # 1v8bA.146.275 read from T0547.t04.many.frag # found chain 1v8bA in template set T0547 146 :AAEMGHNIT 1v8bA 276 :MKGLGARVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=60503 # 1ybdA.146.41 read from T0547.t04.many.frag # found chain 1ybdA in template set T0547 146 :AAEMGHNIT 1ybdA 44 :VVKMGVQVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60504 # 1kjnA.146.31 read from T0547.t04.many.frag # found chain 1kjnA in template set Warning: unaligning (T0547)N152 (1kjnA)R38 because E (beta_S) conformation "forbidden" or filtered. T0547 146 :AAEMGH 1kjnA 32 :LKKKGF T0547 153 :IT 1kjnA 39 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=60506 # 1ynpA.146.56 read from T0547.t04.many.frag # found chain 1ynpA in training set T0547 146 :AAEMGHNIT 1ynpA 37 :VLELGINYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60507 # 1c1dA.146.193 read from T0547.t04.many.frag # found chain 1c1dA in training set Warning: unaligning (T0547)H151 (1c1dA)A199 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (1c1dA)Q200 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAEMG 1c1dA 194 :AAEAG T0547 153 :IT 1c1dA 201 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60509 # 1eu1A.146.209 read from T0547.t04.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)H151 (1eu1A)T215 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T154 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1eu1A)I220 T0547 146 :AAEMG 1eu1A 210 :LKEKG T0547 152 :NI 1eu1A 216 :RV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60511 # 1zxxA.146.111 read from T0547.t04.many.frag # found chain 1zxxA in template set T0547 146 :AAEMGHNIT 1zxxA 112 :LTRHGFNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60512 # 1y1pA.146.30 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 146 :AAEMGHNIT 1y1pA 32 :LLEHGYKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60513 # 1qvzA.146.37 read from T0547.t04.many.frag # found chain 1qvzA in template set T0547 146 :AAEMGHNIT 1qvzA 38 :FRKEGFEVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=60514 # 1k92A.146.29 read from T0547.t04.many.frag # found chain 1k92A in training set T0547 146 :AAEMGHNIT 1k92A 30 :MRQKGAVPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=60515 # 1w2wB.146.80 read from T0547.t04.many.frag # found chain 1w2wB in training set Warning: unaligning (T0547)N152 (1w2wB)K307 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAEMGH 1w2wB 301 :CKQFGI T0547 153 :IT 1w2wB 308 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=60517 # 1p4cA.146.144 read from T0547.t04.many.frag # found chain 1p4cA in training set Warning: unaligning (T0547)M149 (1p4cA)T148 because G (3-10) conformation "forbidden" or filtered. T0547 146 :AAE 1p4cA 145 :ALH T0547 150 :GHNIT 1p4cA 149 :GYTTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60519 # 1vhyA.146.100 read from T0547.t04.many.frag # found chain 1vhyA in template set T0547 146 :AAEMGHNIT 1vhyA 99 :SVELGVNVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60520 # 1nytA.146.137 read from T0547.t04.many.frag # found chain 1nytA in training set T0547 146 :AAEMGHNIT 1nytA 138 :LLSLDCAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60521 # 1vk4A.147.46 read from T0547.t04.many.frag # found chain 1vk4A in template set T0547 147 :AEMGHNITL 1vk4A 35 :SLLGVKTKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60522 # 1jayA.147.20 read from T0547.t04.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)N152 (1jayA)E26 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 1jayA 21 :ATLGH T0547 153 :ITL 1jayA 27 :IVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60524 # 1ybdA.147.42 read from T0547.t04.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)N152 (1ybdA)Q50 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 1ybdA 45 :VKMGV T0547 153 :ITL 1ybdA 51 :VGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=60526 # 1j0dA.147.88 read from T0547.t04.many.frag # found chain 1j0dA in template set T0547 147 :AEMGHNITL 1j0dA 89 :AKLGKKCVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60527 # 1g60A.147.230 read from T0547.t04.many.frag # found chain 1g60A in template set T0547 147 :AEMGHNITL 1g60A 231 :KKLGRNFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60528 # 1y1pA.147.31 read from T0547.t04.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)H151 (1y1pA)Y37 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMG 1y1pA 33 :LEHG T0547 152 :NITL 1y1pA 38 :KVRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=60530 # 1t0bA.147.41 read from T0547.t04.many.frag # found chain 1t0bA in training set T0547 147 :AEMGHNITL 1t0bA 39 :AEAGFDAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60531 # 1kjnA.147.32 read from T0547.t04.many.frag # found chain 1kjnA in template set Warning: unaligning (T0547)M149 (1kjnA)K35 because G (3-10) conformation "forbidden" or filtered. T0547 147 :AE 1kjnA 33 :KK T0547 150 :GHNITL 1kjnA 36 :GFRVTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60533 # 1m65A.147.27 read from T0547.t04.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)H151 (1m65A)I32 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMG 1m65A 28 :KQKG T0547 152 :NITL 1m65A 33 :KLFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60535 # 2bzgA.147.66 read from T0547.t04.many.frag # found chain 2bzgA in template set T0547 147 :AEMGHNITL 2bzgA 80 :ADRGHSVVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60536 # 1e9rA.147.77 read from T0547.t04.many.frag # found chain 1e9rA in template set T0547 147 :AEMGHNITL 1e9rA 148 :LLRGDRMVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60537 # 1usgA.147.65 read from T0547.t04.many.frag # found chain 1usgA in training set Warning: unaligning (T0547)N152 (1usgA)K71 because G (3-10) conformation "forbidden" or filtered. T0547 147 :AEMGH 1usgA 66 :VNDGI T0547 153 :ITL 1usgA 72 :YVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=60539 # 1hdoA.147.23 read from T0547.t04.many.frag # found chain 1hdoA in training set T0547 147 :AEMGHNITL 1hdoA 24 :VQAGYEVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60540 # 1pgjA.147.20 read from T0547.t04.many.frag # found chain 1pgjA in template set Warning: unaligning (T0547)M149 (1pgjA)K23 because G (3-10) conformation "forbidden" or filtered. T0547 147 :AE 1pgjA 21 :AE T0547 150 :GHNITL 1pgjA 24 :GFKVAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60542 # 1ywfA.147.64 read from T0547.t04.many.frag # found chain 1ywfA in template set T0547 147 :AEMGHNITL 1ywfA 45 :RRLGITDVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60543 # 1xdpA.147.388 read from T0547.t04.many.frag # found chain 1xdpA in template set T0547 147 :AEMGHNITL 1xdpA 390 :AHNGKKVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60544 # 1ks9A.147.19 read from T0547.t04.many.frag # found chain 1ks9A in training set Warning: unaligning (T0547)E148 because of BadResidue code BAD_PEPTIDE in next template residue (1ks9A)Q22 Warning: unaligning (T0547)M149 because of BadResidue code BAD_PEPTIDE at template residue (1ks9A)Q22 T0547 147 :A 1ks9A 20 :C T0547 150 :GHNITL 1ks9A 23 :GHEVQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=60546 # 1n4wA.147.24 read from T0547.t04.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)M149 (1n4wA)A32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (1n4wA)V34 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AE 1n4wA 30 :GE T0547 150 :G 1n4wA 33 :G T0547 152 :NITL 1n4wA 35 :QTLM Number of specific fragments extracted= 3 number of extra gaps= 2 total=60549 # 1v8bA.147.276 read from T0547.t04.many.frag # found chain 1v8bA in template set T0547 147 :AEMGHNITL 1v8bA 277 :KGLGARVYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60550 # 1qopB.147.122 read from T0547.t04.many.frag # found chain 1qopB in training set Warning: unaligning (T0547)M149 (1qopB)L126 because G (3-10) conformation "forbidden" or filtered. T0547 147 :AE 1qopB 124 :AL T0547 150 :GHNITL 1qopB 127 :GLKCRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=60552 # 1l6rA.147.34 read from T0547.t04.many.frag # found chain 1l6rA in training set T0547 147 :AEMGHNITL 1l6rA 32 :EKKGLTVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60553 # 1iirA.147.24 read from T0547.t04.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)M149 (1iirA)L27 because G (3-10) conformation "forbidden" or filtered. T0547 147 :AE 1iirA 25 :RD T0547 150 :GHNITL 1iirA 28 :GADVRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=60555 # 1p3dA.147.38 read from T0547.t04.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)L155 (1p3dA)G47 because Y (epsilon') conformation "forbidden" or filtered. T0547 147 :AEMGHNIT 1p3dA 39 :LNEGYQIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=60556 # 1qsgA.147.31 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)N152 (1qsgA)E34 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 1qsgA 29 :HREGA T0547 153 :ITL 1qsgA 35 :LAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=60558 1b43A expands to /projects/compbio/data/pdb/1b43.pdb.gz 1b43A:# 1b43A.147.68 read from T0547.t04.many.frag # adding 1b43A to template set # found chain 1b43A in template set T0547 147 :AEMGHNITL 1b43A 68 :MEAGIKPVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=60559 # 1ykjA.147.21 read from T0547.t04.many.frag # found chain 1ykjA in template set Warning: unaligning (T0547)H151 (1ykjA)I1026 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMG 1ykjA 1022 :HKAG T0547 152 :NITL 1ykjA 1027 :DNVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=60561 # 1zs9A.147.142 read from T0547.t04.many.frag # found chain 1zs9A in training set Warning: unaligning (T0547)M149 (1zs9A)A145 because G (3-10) conformation "forbidden" or filtered. T0547 147 :AE 1zs9A 143 :RE T0547 150 :GHNITL 1zs9A 146 :GMKVYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=60563 # 1zcjA.147.56 read from T0547.t04.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)N152 (1zcjA)S321 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 1zcjA 316 :ARVGI T0547 153 :ITL 1zcjA 322 :VVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60565 # 1zxxA.147.112 read from T0547.t04.many.frag # found chain 1zxxA in template set T0547 147 :AEMGHNITL 1zxxA 113 :TRHGFNSIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60566 # 2a3nA.147.125 read from T0547.t04.many.frag # found chain 2a3nA in training set T0547 147 :AEMGHNITL 2a3nA 114 :KAQGIRVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60567 # 1j0dA.148.89 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)N152 (1j0dA)K94 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :EMGH 1j0dA 90 :KLGK T0547 153 :ITLT 1j0dA 95 :CVLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=60569 # 1n4wA.148.25 read from T0547.t04.many.frag # found chain 1n4wA in training set T0547 148 :EMGHNITLT 1n4wA 31 :EAGVQTLML Number of specific fragments extracted= 1 number of extra gaps= 0 total=60570 # 1xgkA.148.26 read from T0547.t04.many.frag # found chain 1xgkA in training set T0547 148 :EMGHNITLT 1xgkA 27 :AVGHHVRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60571 # 1gu7A.148.189 read from T0547.t04.many.frag # found chain 1gu7A in training set T0547 148 :EMGHNITLT 1gu7A 212 :LLNFNSISV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60572 # 1hdoA.148.24 read from T0547.t04.many.frag # found chain 1hdoA in training set T0547 148 :EMGHNITLT 1hdoA 25 :QAGYEVTVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60573 # 1y1pA.148.32 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 148 :EMGHNITLT 1y1pA 34 :EHGYKVRGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60574 # 1ybdA.148.43 read from T0547.t04.many.frag # found chain 1ybdA in template set T0547 148 :EMGHNITLT 1ybdA 46 :KMGVQVGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60575 # 1tt7A.148.172 read from T0547.t04.many.frag # found chain 1tt7A in template set Warning: unaligning (T0547)T154 (1tt7A)V179 because D (zeta) conformation "forbidden" or filtered. T0547 148 :EMGHNI 1tt7A 173 :KRGYDV T0547 155 :LT 1tt7A 180 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=60577 # 1xd8A.148.27 read from T0547.t04.many.frag # found chain 1xd8A in template set T0547 148 :EMGHNITLT 1xd8A 28 :EMGKKVMIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60578 # 1m65A.148.28 read from T0547.t04.many.frag # found chain 1m65A in training set T0547 148 :EMGHNITLT 1m65A 29 :QKGIKLFAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60579 # 1pgjA.148.21 read from T0547.t04.many.frag # found chain 1pgjA in template set T0547 148 :EMGHNITLT 1pgjA 22 :EKGFKVAVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60580 # 1em8A.148.33 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 148 :EMGHNITLT 1em8A 34 :RSGKRVLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60581 # 1xdpA.148.389 read from T0547.t04.many.frag # found chain 1xdpA in template set Warning: unaligning (T0547)L155 (1xdpA)V398 because D (zeta) conformation "forbidden" or filtered. T0547 148 :EMGHNIT 1xdpA 391 :HNGKKVT T0547 156 :T 1xdpA 399 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=60583 # 1qopB.148.123 read from T0547.t04.many.frag # found chain 1qopB in training set T0547 148 :EMGHNITLT 1qopB 125 :LLGLKCRIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=60584 # 1jayA.148.21 read from T0547.t04.many.frag # found chain 1jayA in training set T0547 148 :EMGHNITLT 1jayA 22 :TLGHEIVVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60585 # 1e9rA.148.78 read from T0547.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)M149 (1e9rA)R150 because G (3-10) conformation "forbidden" or filtered. T0547 148 :E 1e9rA 149 :L T0547 150 :GHNITLT 1e9rA 151 :GDRMVIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60587 # 1zcjA.148.57 read from T0547.t04.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)N152 (1zcjA)S321 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :EMGH 1zcjA 317 :RVGI T0547 153 :ITLT 1zcjA 322 :VVAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60589 1jztA expands to /projects/compbio/data/pdb/1jzt.pdb.gz 1jztA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1jztA.148.82 read from T0547.t04.many.frag # adding 1jztA to template set # found chain 1jztA in template set T0547 148 :EMGHNITLT 1jztA 83 :LFGYNPVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60590 # 1vk4A.148.47 read from T0547.t04.many.frag # found chain 1vk4A in template set T0547 148 :EMGHNITLT 1vk4A 36 :LLGVKTKVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60591 # 1b43A.148.69 read from T0547.t04.many.frag # found chain 1b43A in template set T0547 148 :EMGHNITLT 1b43A 69 :EAGIKPVYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60592 # 2carA.148.6 read from T0547.t04.many.frag # found chain 2carA in training set T0547 148 :EMGHNITLT 2carA 5 :LVGKKIVFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60593 # 2bmfA.148.45 read from T0547.t04.many.frag # found chain 2bmfA in template set T0547 148 :EMGHNITLT 2bmfA 213 :KRGLRTLIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60594 1yz4A expands to /projects/compbio/data/pdb/1yz4.pdb.gz 1yz4A:# 1yz4A.148.30 read from T0547.t04.many.frag # adding 1yz4A to template set # found chain 1yz4A in template set T0547 148 :EMGHNITLT 1yz4A 28 :RNKITHIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60595 1l1eA expands to /projects/compbio/data/pdb/1l1e.pdb.gz 1l1eA:# 1l1eA.148.84 read from T0547.t04.many.frag # adding 1l1eA to template set # found chain 1l1eA in template set Warning: unaligning (T0547)M149 (1l1eA)Y86 because G (3-10) conformation "forbidden" or filtered. T0547 148 :E 1l1eA 85 :K T0547 150 :GHNITLT 1l1eA 87 :DVNVVGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60597 # 1ykjA.148.22 read from T0547.t04.many.frag # found chain 1ykjA in template set T0547 148 :EMGHNITLT 1ykjA 1023 :KAGIDNVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60598 # 1gesA.148.24 read from T0547.t04.many.frag # found chain 1gesA in template set T0547 148 :EMGHNITLT 1gesA 25 :MYGQKCALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60599 # 1qsgA.148.32 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)N152 (1qsgA)E34 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :EMGH 1qsgA 30 :REGA T0547 153 :ITLT 1qsgA 35 :LAFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=60601 # 1g60A.148.231 read from T0547.t04.many.frag # found chain 1g60A in template set Warning: unaligning (T0547)L155 (1g60A)G239 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T156 (1g60A)C240 because Y (epsilon') conformation "forbidden" or filtered. T0547 148 :EMGHNIT 1g60A 232 :KLGRNFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=60602 # 1kjnA.148.33 read from T0547.t04.many.frag # found chain 1kjnA in template set Warning: unaligning (T0547)H151 (1kjnA)F37 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :EMG 1kjnA 34 :KKG T0547 152 :NITLT 1kjnA 38 :RVTVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=60604 # 2a3nA.148.126 read from T0547.t04.many.frag # found chain 2a3nA in training set T0547 148 :EMGHNITLT 2a3nA 115 :AQGIRVVAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60605 # 1tt7A.149.173 read from T0547.t04.many.frag # found chain 1tt7A in template set Warning: unaligning (T0547)T154 (1tt7A)V179 because D (zeta) conformation "forbidden" or filtered. T0547 149 :MGHNI 1tt7A 174 :RGYDV T0547 155 :LTI 1tt7A 180 :AST Number of specific fragments extracted= 2 number of extra gaps= 1 total=60607 # 1j0dA.149.90 read from T0547.t04.many.frag # found chain 1j0dA in template set T0547 149 :MGHNITLTI 1j0dA 91 :LGKKCVLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60608 # 1xd8A.149.28 read from T0547.t04.many.frag # found chain 1xd8A in template set T0547 149 :MGHNITLTI 1xd8A 29 :MGKKVMIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60609 # 1em8A.149.34 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 149 :MGHNITLTI 1em8A 35 :SGKRVLIAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=60610 # 1gu7A.149.190 read from T0547.t04.many.frag # found chain 1gu7A in training set T0547 149 :MGHNITLTI 1gu7A 213 :LNFNSISVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60611 # 1hdoA.149.25 read from T0547.t04.many.frag # found chain 1hdoA in training set T0547 149 :MGHNITLTI 1hdoA 26 :AGYEVTVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60612 # 1e9rA.149.79 read from T0547.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)I153 (1e9rA)M154 because Y (epsilon') conformation "forbidden" or filtered. T0547 149 :MGHN 1e9rA 150 :RGDR T0547 154 :TLTI 1e9rA 155 :VIVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=60614 # 1srvA.149.51 read from T0547.t04.many.frag # found chain 1srvA in template set Warning: unaligning (T0547)H151 (1srvA)K245 because P (beta_P) conformation "forbidden" or filtered. T0547 149 :MG 1srvA 243 :TG T0547 152 :NITLTI 1srvA 246 :PLLIIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60616 # 2bmfA.149.46 read from T0547.t04.many.frag # found chain 2bmfA in template set T0547 149 :MGHNITLTI 2bmfA 214 :RGLRTLILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60617 # 1wuiS.149.65 read from T0547.t04.many.frag # found chain 1wuiS in training set Warning: unaligning (T0547)N152 (1wuiS)G69 because S (epsilon) conformation "forbidden" or filtered. T0547 149 :MGH 1wuiS 66 :SPH T0547 153 :ITLTI 1wuiS 70 :FIAVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60619 # 2carA.149.7 read from T0547.t04.many.frag # found chain 2carA in training set T0547 149 :MGHNITLTI 2carA 6 :VGKKIVFVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60620 # 1rqbA.149.128 read from T0547.t04.many.frag # found chain 1rqbA in template set Warning: unaligning (T0547)M149 (1rqbA)N118 because G (3-10) conformation "forbidden" or filtered. T0547 150 :GHNITLTI 1rqbA 119 :GMDVFRVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=60621 # 1gesA.149.25 read from T0547.t04.many.frag # found chain 1gesA in template set T0547 149 :MGHNITLTI 1gesA 26 :YGQKCALIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60622 1c4oA expands to /projects/compbio/data/pdb/1c4o.pdb.gz 1c4oA:# 1c4oA.149.51 read from T0547.t04.many.frag # adding 1c4oA to template set # found chain 1c4oA in template set T0547 149 :MGHNITLTI 1c4oA 53 :LGRPALVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60623 # 1yz4A.149.31 read from T0547.t04.many.frag # found chain 1yz4A in template set T0547 149 :MGHNITLTI 1yz4A 29 :NKITHIISI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60624 # 1z5zA.149.110 read from T0547.t04.many.frag # found chain 1z5zA in template set T0547 149 :MGHNITLTI 1z5zA 746 :EGDKIAIFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60625 # 1j93A.149.204 read from T0547.t04.many.frag # found chain 1j93A in template set Warning: unaligning (T0547)M149 (1j93A)S204 because G (3-10) conformation "forbidden" or filtered. T0547 150 :GHNITLTI 1j93A 205 :GAQAVQIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=60626 # 1xgkA.149.27 read from T0547.t04.many.frag # found chain 1xgkA in training set T0547 149 :MGHNITLTI 1xgkA 28 :VGHHVRAQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60627 # 1pa1A.149.113 read from T0547.t04.many.frag # found chain 1pa1A in template set T0547 149 :MGHNITLTI 1pa1A 602 :QKSRGVVML Number of specific fragments extracted= 1 number of extra gaps= 0 total=60628 # 2a3nA.149.127 read from T0547.t04.many.frag # found chain 2a3nA in training set Warning: unaligning (T0547)H151 (2a3nA)I118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (2a3nA)R119 because P (beta_P) conformation "forbidden" or filtered. T0547 149 :MG 2a3nA 116 :QG T0547 153 :ITLTI 2a3nA 120 :VVAIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=60630 # 1yacA.149.49 read from T0547.t04.many.frag # found chain 1yacA in training set T0547 149 :MGHNITLTI 1yacA 50 :FNLPTILTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60631 # 1n4wA.149.26 read from T0547.t04.many.frag # found chain 1n4wA in training set T0547 149 :MGHNITLTI 1n4wA 32 :AGVQTLMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60632 # 2etvA.149.94 read from T0547.t04.many.frag # found chain 2etvA in training set T0547 149 :MGHNITLTI 2etvA 107 :LQPDVVFIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60633 # 1xdpA.149.390 read from T0547.t04.many.frag # found chain 1xdpA in template set Warning: unaligning (T0547)N152 (1xdpA)K395 because P (beta_P) conformation "forbidden" or filtered. T0547 149 :MGH 1xdpA 392 :NGK T0547 153 :ITLTI 1xdpA 396 :VTVVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60635 # 1pii.149.155 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)H151 (1pii)M158 because P (beta_P) conformation "forbidden" or filtered. T0547 149 :MG 1pii 156 :LE T0547 152 :NITLTI 1pii 159 :GVLTEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60637 # 1ybdA.149.44 read from T0547.t04.many.frag # found chain 1ybdA in template set T0547 149 :MGHNITLTI 1ybdA 47 :MGVQVGIVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60638 # 2a84A.149.29 read from T0547.t04.many.frag # found chain 2a84A in training set Warning: unaligning (T0547)N152 (2a84A)R33 because P (beta_P) conformation "forbidden" or filtered. T0547 149 :MGH 2a84A 30 :TGR T0547 153 :ITLTI 2a84A 34 :VMLVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=60640 # 1id1A.149.24 read from T0547.t04.many.frag # found chain 1id1A in template set T0547 149 :MGHNITLTI 1id1A 27 :RGQNVTVIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60641 # 2f46A.149.40 read from T0547.t04.many.frag # found chain 2f46A in training set T0547 149 :MGHNITLTI 2f46A 40 :LGIKTIICN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60642 # 1pgjA.149.22 read from T0547.t04.many.frag # found chain 1pgjA in template set Warning: unaligning (T0547)M149 (1pgjA)K23 because G (3-10) conformation "forbidden" or filtered. T0547 150 :GHNITLTI 1pgjA 24 :GFKVAVFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=60643 # 1hdoA.150.26 read from T0547.t04.many.frag # found chain 1hdoA in training set T0547 150 :GHNITLTIE 1hdoA 27 :GYEVTVLVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60644 # 1gu7A.150.191 read from T0547.t04.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)N152 (1gu7A)N216 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :GH 1gu7A 214 :NF T0547 153 :ITLTIE 1gu7A 217 :SISVIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=60646 # 1pii.150.156 read from T0547.t04.many.frag # found chain 1pii in template set T0547 150 :GHNITLTIE 1pii 157 :EMGVLTEVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60647 # 1qsgA.150.34 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)N152 (1qsgA)E34 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :GH 1qsgA 32 :GA T0547 153 :ITLTIE 1qsgA 35 :LAFTYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=60649 # 1e9rA.150.80 read from T0547.t04.many.frag # found chain 1e9rA in template set T0547 150 :GHNITLTIE 1e9rA 151 :GDRMVIVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=60650 # 2carA.150.8 read from T0547.t04.many.frag # found chain 2carA in training set T0547 150 :GHNITLTIE 2carA 7 :GKKIVFVTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60651 # 1em8A.150.35 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 150 :GHNITLTIE 1em8A 36 :GKRVLIACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60652 # 1ybdA.150.45 read from T0547.t04.many.frag # found chain 1ybdA in template set T0547 150 :GHNITLTIE 1ybdA 48 :GVQVGIVVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60653 # 1b43A.150.71 read from T0547.t04.many.frag # found chain 1b43A in template set T0547 150 :GHNITLTIE 1b43A 71 :GIKPVYVFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=60654 # 1lyvA.150.115 read from T0547.t04.many.frag # found chain 1lyvA in training set Warning: unaligning (T0547)I157 (1lyvA)L285 because G (3-10) conformation "forbidden" or filtered. T0547 150 :GHNITLT 1lyvA 278 :RTPVLAV T0547 158 :E 1lyvA 286 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=60656 # 1c4oA.150.52 read from T0547.t04.many.frag # found chain 1c4oA in template set T0547 150 :GHNITLTIE 1c4oA 54 :GRPALVLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=60657 # 1j0dA.150.91 read from T0547.t04.many.frag # found chain 1j0dA in template set T0547 150 :GHNITLTIE 1j0dA 92 :GKKCVLIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60658 # 1tt7A.150.174 read from T0547.t04.many.frag # found chain 1tt7A in template set T0547 150 :GHNITLTIE 1tt7A 175 :GYDVVASTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60659 # 1z5zA.150.111 read from T0547.t04.many.frag # found chain 1z5zA in template set T0547 150 :GHNITLTIE 1z5zA 747 :GDKIAIFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60660 # 2fcjA.150.2 read from T0547.t04.many.frag # found chain 2fcjA in training set Warning: unaligning (T0547)G150 (2fcjA)R3 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :HNITLTIE 2fcjA 4 :VEKVIIVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=60661 # 1zk4A.150.29 read from T0547.t04.many.frag # found chain 1zk4A in training set T0547 150 :GHNITLTIE 1zk4A 30 :GAKVMITGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60662 # 1y1pA.150.34 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 150 :GHNITLTIE 1y1pA 36 :GYKVRGTAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60663 # 1oxxK.150.190 read from T0547.t04.many.frag # found chain 1oxxK in training set T0547 150 :GHNITLTIE 1oxxK 191 :GVTLLVVSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=60664 # 1srvA.150.52 read from T0547.t04.many.frag # found chain 1srvA in template set Warning: unaligning (T0547)N152 (1srvA)P246 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :GH 1srvA 244 :GK T0547 153 :ITLTIE 1srvA 247 :LLIIAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=60666 # 1l1eA.150.86 read from T0547.t04.many.frag # found chain 1l1eA in template set T0547 150 :GHNITLTIE 1l1eA 87 :DVNVVGLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60667 # 1qwoA.150.128 read from T0547.t04.many.frag # found chain 1qwoA in training set T0547 150 :GHNITLTIE 1qwoA 130 :SVVPFIRAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60668 # 1v8bA.150.279 read from T0547.t04.many.frag # found chain 1v8bA in template set Warning: unaligning (T0547)I157 (1v8bA)E287 because Y (epsilon') conformation "forbidden" or filtered. T0547 150 :GHNITLT 1v8bA 280 :GARVYIT T0547 158 :E 1v8bA 288 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=60670 # 2af4C.150.39 read from T0547.t04.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 T0547 150 :GH 2af4C 40 :GI T0547 154 :TLTIE 2af4C 44 :IVLVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=60672 # 1nytA.150.141 read from T0547.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)I157 (1nytA)N149 because Y (epsilon') conformation "forbidden" or filtered. T0547 150 :GHNITLT 1nytA 142 :DCAVTIT T0547 158 :E 1nytA 150 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=60674 # 1xdpA.150.391 read from T0547.t04.many.frag # found chain 1xdpA in template set T0547 150 :GHNITLTIE 1xdpA 393 :GKKVTVVVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60675 # 1zcjA.150.59 read from T0547.t04.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)N152 (1zcjA)S321 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :GH 1zcjA 319 :GI T0547 153 :ITLTIE 1zcjA 322 :VVAVES Number of specific fragments extracted= 2 number of extra gaps= 1 total=60677 # 1tf5A.150.431 read from T0547.t04.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)H151 (1tf5A)Q430 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :G 1tf5A 429 :G T0547 152 :NITLTIE 1tf5A 431 :PVLVGTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60679 # 1g60A.150.233 read from T0547.t04.many.frag # found chain 1g60A in template set Warning: unaligning (T0547)L155 (1g60A)G239 because Y (epsilon') conformation "forbidden" or filtered. T0547 150 :GHNIT 1g60A 234 :GRNFI T0547 156 :TIE 1g60A 240 :CDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=60681 # 2ahrA.150.25 read from T0547.t04.many.frag # found chain 2ahrA in template set T0547 150 :GHNITLTIE 2ahrA 23 :PHELIISGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60682 # 1i4wA.150.80 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 150 :GHNITLTIE 1i4wA 69 :CPRQYSLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60683 # 1hdoA.151.27 read from T0547.t04.many.frag # found chain 1hdoA in training set Warning: unaligning (T0547)G159 (1hdoA)D36 because D (zeta) conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1hdoA 28 :YEVTVLVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=60684 # 1gu7A.151.192 read from T0547.t04.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)G159 (1gu7A)D223 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1gu7A 215 :FNSISVIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=60685 # 1pii.151.157 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G159 (1pii)N166 because Y (epsilon') conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1pii 158 :MGVLTEVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=60686 # 1em8A.151.36 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 151 :HNITLTIEG 1em8A 37 :KRVLIACED Number of specific fragments extracted= 1 number of extra gaps= 0 total=60687 # 2fcjA.151.3 read from T0547.t04.many.frag # found chain 2fcjA in training set T0547 151 :HNITLTIEG 2fcjA 4 :VEKVIIVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60688 # 1lyvA.151.116 read from T0547.t04.many.frag # found chain 1lyvA in training set T0547 151 :HNITLTIEG 1lyvA 279 :TPVLAVLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60689 # 1c4oA.151.53 read from T0547.t04.many.frag # found chain 1c4oA in template set T0547 151 :HNITLTIEG 1c4oA 55 :RPALVLAPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60690 # 1oxxK.151.191 read from T0547.t04.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)H151 (1oxxK)V192 because P (beta_P) conformation "forbidden" or filtered. T0547 152 :NITLTIEG 1oxxK 193 :TLLVVSHD Number of specific fragments extracted= 1 number of extra gaps= 1 total=60691 # 2carA.151.9 read from T0547.t04.many.frag # found chain 2carA in training set Warning: unaligning (T0547)N152 (2carA)K9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I157 (2carA)T14 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (2carA)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 151 :H 2carA 8 :K T0547 153 :ITLT 2carA 10 :IVFV T0547 158 :E 2carA 15 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=60694 # 1y1pA.151.35 read from T0547.t04.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G159 (1y1pA)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1y1pA 37 :YKVRGTAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=60695 # 1qsgA.151.35 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)G159 (1qsgA)N41 because Y (epsilon') conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1qsgA 33 :AELAFTYQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=60696 # 1z5zA.151.112 read from T0547.t04.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)N152 (1z5zA)K749 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1z5zA)F756 because E (beta_S) conformation "forbidden" or filtered. T0547 151 :H 1z5zA 748 :D T0547 153 :ITLTIE 1z5zA 750 :IAIFTQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=60698 # 1e9rA.151.81 read from T0547.t04.many.frag # found chain 1e9rA in template set T0547 151 :HNITLTIEG 1e9rA 152 :DRMVIVDPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60699 # 1b43A.151.72 read from T0547.t04.many.frag # found chain 1b43A in template set T0547 151 :HNITLTIEG 1b43A 72 :IKPVYVFDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=60700 # 1q0uA.151.72 read from T0547.t04.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)H151 (1q0uA)V73 because P (beta_P) conformation "forbidden" or filtered. T0547 152 :NITLTIEG 1q0uA 74 :QAVITAPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=60701 # 2af4C.151.40 read from T0547.t04.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)G159 (2af4C)N49 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :H 2af4C 41 :I T0547 154 :TLTIE 2af4C 44 :IVLVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=60703 # 1qwoA.151.129 read from T0547.t04.many.frag # found chain 1qwoA in training set Warning: unaligning (T0547)E158 (1qwoA)S138 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :HNITLTI 1qwoA 131 :VVPFIRA T0547 159 :G 1qwoA 139 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=60705 # 1tt7A.151.175 read from T0547.t04.many.frag # found chain 1tt7A in template set T0547 151 :HNITLTIEG 1tt7A 176 :YDVVASTGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60706 # 1ybdA.151.46 read from T0547.t04.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)G159 (1ybdA)G57 because G (3-10) conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1ybdA 49 :VQVGIVVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=60707 # 1zcjA.151.60 read from T0547.t04.many.frag # found chain 1zcjA in template set T0547 151 :HNITLTIEG 1zcjA 320 :ISVVAVESD Number of specific fragments extracted= 1 number of extra gaps= 0 total=60708 # 1zk4A.151.30 read from T0547.t04.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)I157 (1zk4A)G37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1zk4A)H39 because E (beta_S) conformation "forbidden" or filtered. T0547 151 :HNITLT 1zk4A 31 :AKVMIT T0547 158 :E 1zk4A 38 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=60710 # 1nytA.151.142 read from T0547.t04.many.frag # found chain 1nytA in training set T0547 151 :HNITLTIEG 1nytA 143 :CAVTITNRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60711 # 1j0dA.151.92 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)E158 (1j0dA)E100 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :HNITLTI 1j0dA 93 :KKCVLIQ T0547 159 :G 1j0dA 101 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=60713 # 1tf5A.151.432 read from T0547.t04.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)N152 (1tf5A)P431 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1tf5A)A438 because E (beta_S) conformation "forbidden" or filtered. T0547 151 :H 1tf5A 430 :Q T0547 153 :ITLTIE 1tf5A 432 :VLVGTV Number of specific fragments extracted= 2 number of extra gaps= 2 total=60715 # 1y5mA.151.42 read from T0547.t04.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)N152 (1y5mA)H60 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :H 1y5mA 59 :A T0547 153 :ITLTIEG 1y5mA 61 :VVLTARS Number of specific fragments extracted= 2 number of extra gaps= 1 total=60717 # 1l1eA.151.87 read from T0547.t04.many.frag # found chain 1l1eA in template set T0547 151 :HNITLTIEG 1l1eA 88 :VNVVGLTLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60718 # 2bmfA.151.48 read from T0547.t04.many.frag # found chain 2bmfA in template set T0547 151 :HNITLTIEG 2bmfA 216 :LRTLILAPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60719 # 1jayA.151.24 read from T0547.t04.many.frag # found chain 1jayA in training set T0547 151 :HNITLTIEG 1jayA 25 :HEIVVGSRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60720 # 1srvA.151.53 read from T0547.t04.many.frag # found chain 1srvA in template set Warning: unaligning (T0547)G159 (1srvA)D253 because Y (epsilon') conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1srvA 245 :KPLLIIAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=60721 # 1i4wA.151.81 read from T0547.t04.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)E158 (1i4wA)E77 because E (beta_S) conformation "forbidden" or filtered. T0547 151 :HNITLTI 1i4wA 70 :PRQYSLL T0547 159 :G 1i4wA 78 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=60723 # 2fcjA.152.4 read from T0547.t04.many.frag # found chain 2fcjA in training set Warning: unaligning (T0547)N152 (2fcjA)E5 because G (3-10) conformation "forbidden" or filtered. T0547 153 :ITLTIEGL 2fcjA 6 :KVIIVEGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=60724 # 1hdoA.152.28 read from T0547.t04.many.frag # found chain 1hdoA in training set T0547 152 :NITLTIEGL 1hdoA 29 :EVTVLVRDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60725 # 1lyvA.152.117 read from T0547.t04.many.frag # found chain 1lyvA in training set T0547 152 :NITLTIEGL 1lyvA 280 :PVLAVLASS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60726 # 1pii.152.158 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G159 (1pii)N166 because Y (epsilon') conformation "forbidden" or filtered. T0547 152 :NITLTIE 1pii 159 :GVLTEVS T0547 160 :L 1pii 167 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=60728 # 1y1pA.152.36 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 152 :NITLTIEGL 1y1pA 38 :KVRGTARSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60729 # 1gu7A.152.193 read from T0547.t04.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)L160 (1gu7A)R224 because Y (epsilon') conformation "forbidden" or filtered. T0547 152 :NITLTIEG 1gu7A 216 :NSISVIRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=60730 # 1c4oA.152.54 read from T0547.t04.many.frag # found chain 1c4oA in template set Warning: unaligning (T0547)G159 (1c4oA)N63 because Y (epsilon') conformation "forbidden" or filtered. T0547 152 :NITLTIE 1c4oA 56 :PALVLAP T0547 160 :L 1c4oA 64 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=60732 # 2af4C.152.41 read from T0547.t04.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)N152 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)E158 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (2af4C)N49 because P (beta_P) conformation "forbidden" or filtered. T0547 154 :TLTI 2af4C 44 :IVLV T0547 160 :L 2af4C 50 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=60734 # 1em8A.152.37 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 152 :NITLTIEGL 1em8A 38 :RVLIACEDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60735 # 1i4wA.152.82 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 152 :NITLTIEGL 1i4wA 71 :RQYSLLEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60736 # 1q0uA.152.73 read from T0547.t04.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)N152 (1q0uA)Q74 because G (3-10) conformation "forbidden" or filtered. T0547 153 :ITLTIEGL 1q0uA 75 :AVITAPTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=60737 # 1z5zA.152.113 read from T0547.t04.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)N152 (1z5zA)K749 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIEGL 1z5zA 750 :IAIFTQFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=60738 # 1oxxK.152.192 read from T0547.t04.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)G159 (1oxxK)D200 because P (beta_P) conformation "forbidden" or filtered. T0547 152 :NITLTIE 1oxxK 193 :TLLVVSH T0547 160 :L 1oxxK 201 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=60740 # 2carA.152.10 read from T0547.t04.many.frag # found chain 2carA in training set Warning: unaligning (T0547)G159 (2carA)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 152 :NITLTIE 2carA 9 :KIVFVTG T0547 160 :L 2carA 17 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=60742 # 2b7nA.152.183 read from T0547.t04.many.frag # found chain 2b7nA in template set Warning: unaligning (T0547)G159 (2b7nA)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 152 :NITLTIE 2b7nA 184 :KIEIECE T0547 160 :L 2b7nA 192 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=60744 # 1zcjA.152.61 read from T0547.t04.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)G159 (1zcjA)D328 because P (beta_P) conformation "forbidden" or filtered. T0547 152 :NITLTIE 1zcjA 321 :SVVAVES T0547 160 :L 1zcjA 329 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=60746 # 1qsgA.152.36 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)G159 (1qsgA)N41 because Y (epsilon') conformation "forbidden" or filtered. T0547 152 :NITLTIE 1qsgA 34 :ELAFTYQ T0547 160 :L 1qsgA 42 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=60748 # 1y5mA.152.43 read from T0547.t04.many.frag # found chain 1y5mA in template set T0547 152 :NITLTIEGL 1y5mA 60 :HVVLTARSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60749 # 1qwoA.152.130 read from T0547.t04.many.frag # found chain 1qwoA in training set T0547 152 :NITLTIEGL 1qwoA 132 :VPFIRASGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60750 # 1l1eA.152.88 read from T0547.t04.many.frag # found chain 1l1eA in template set T0547 152 :NITLTIEGL 1l1eA 89 :NVVGLTLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60751 # 1e9rA.152.82 read from T0547.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)L160 (1e9rA)G161 because L (left) conformation "forbidden" or filtered. T0547 152 :NITLTIEG 1e9rA 153 :RMVIVDPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=60752 # 1tf5A.152.433 read from T0547.t04.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)N152 (1tf5A)P431 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIEGL 1tf5A 432 :VLVGTVAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=60753 # 1zk4A.152.31 read from T0547.t04.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)N152 (1zk4A)K32 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I157 (1zk4A)G37 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLT 1zk4A 33 :VMIT T0547 158 :EGL 1zk4A 38 :RHS Number of specific fragments extracted= 2 number of extra gaps= 2 total=60755 # 1nytA.152.143 read from T0547.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)G159 (1nytA)T151 because N (gamma') conformation "forbidden" or filtered. T0547 152 :NITLTIE 1nytA 144 :AVTITNR T0547 160 :L 1nytA 152 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=60757 # 1rifA.152.158 read from T0547.t04.many.frag # found chain 1rifA in template set T0547 152 :NITLTIEGL 1rifA 159 :KILIIVPTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60758 # 1b43A.152.73 read from T0547.t04.many.frag # found chain 1b43A in template set T0547 152 :NITLTIEGL 1b43A 73 :KPVYVFDGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60759 # 1dljA.152.23 read from T0547.t04.many.frag # found chain 1dljA in training set T0547 152 :NITLTIEGL 1dljA 24 :EVTIVDILP Number of specific fragments extracted= 1 number of extra gaps= 0 total=60760 # 1wbhA.152.110 read from T0547.t04.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)N152 (1wbhA)P110 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIEGL 1wbhA 111 :LIPGISTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=60761 # 1v8bA.152.281 read from T0547.t04.many.frag # found chain 1v8bA in template set Warning: unaligning (T0547)G159 (1v8bA)D289 because P (beta_P) conformation "forbidden" or filtered. T0547 152 :NITLTIE 1v8bA 282 :RVYITEI T0547 160 :L 1v8bA 290 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=60763 # 2bmfA.152.49 read from T0547.t04.many.frag # found chain 2bmfA in template set T0547 152 :NITLTIEGL 2bmfA 217 :RTLILAPTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60764 # 2fcjA.153.5 read from T0547.t04.many.frag # found chain 2fcjA in training set Warning: unaligning (T0547)G159 (2fcjA)G12 because E (beta_S) conformation "forbidden" or filtered. T0547 153 :ITLTIE 2fcjA 6 :KVIIVE T0547 160 :LN 2fcjA 13 :RS Number of specific fragments extracted= 2 number of extra gaps= 1 total=60766 # 2af4C.153.42 read from T0547.t04.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)E158 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTI 2af4C 44 :IVLV T0547 159 :GLN 2af4C 49 :NEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=60768 # 1i4wA.153.83 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 153 :ITLTIEGLN 1i4wA 72 :QYSLLEKRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60769 # 1hdoA.153.29 read from T0547.t04.many.frag # found chain 1hdoA in training set T0547 153 :ITLTIEGLN 1hdoA 30 :VTVLVRDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60770 # 1lyvA.153.118 read from T0547.t04.many.frag # found chain 1lyvA in training set T0547 153 :ITLTIEGLN 1lyvA 281 :VLAVLASSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60771 # 1gu7A.153.194 read from T0547.t04.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)E158 (1gu7A)R222 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L160 (1gu7A)R224 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLTI 1gu7A 217 :SISVI T0547 159 :G 1gu7A 223 :D T0547 161 :N 1gu7A 225 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=60774 # 1y1pA.153.37 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 153 :ITLTIEGLN 1y1pA 39 :VRGTARSAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60775 # 1em8A.153.38 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 153 :ITLTIEGLN 1em8A 39 :VLIACEDEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60776 # 1c4oA.153.55 read from T0547.t04.many.frag # found chain 1c4oA in template set Warning: unaligning (T0547)G159 (1c4oA)N63 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLTIE 1c4oA 57 :ALVLAP T0547 160 :LN 1c4oA 64 :KI Number of specific fragments extracted= 2 number of extra gaps= 1 total=60778 # 1ua4A.153.86 read from T0547.t04.many.frag # found chain 1ua4A in template set Warning: unaligning (T0547)G159 (1ua4A)S93 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1ua4A 87 :AELFVE T0547 160 :LN 1ua4A 94 :CP Number of specific fragments extracted= 2 number of extra gaps= 1 total=60780 # 1pii.153.159 read from T0547.t04.many.frag # found chain 1pii in template set T0547 153 :ITLTIEGLN 1pii 160 :VLTEVSNEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60781 # 1z5zA.153.114 read from T0547.t04.many.frag # found chain 1z5zA in template set T0547 153 :ITLTIEGLN 1z5zA 750 :IAIFTQFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=60782 # 2tpsA.153.79 read from T0547.t04.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)E158 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)D94 Warning: unaligning (T0547)G159 because of BadResidue code BAD_PEPTIDE at template residue (2tpsA)D94 T0547 153 :ITLTI 2tpsA 88 :PFIVN T0547 160 :LN 2tpsA 95 :VE Number of specific fragments extracted= 2 number of extra gaps= 1 total=60784 # 1q0uA.153.74 read from T0547.t04.many.frag # found chain 1q0uA in template set T0547 153 :ITLTIEGLN 1q0uA 75 :AVITAPTRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60785 # 1oxxK.153.193 read from T0547.t04.many.frag # found chain 1oxxK in training set T0547 153 :ITLTIEGLN 1oxxK 194 :LLVVSHDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60786 # 1k7jA.153.64 read from T0547.t04.many.frag # found chain 1k7jA in training set Warning: unaligning (T0547)G159 (1k7jA)D71 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLTIE 1k7jA 65 :FTLMCR T0547 160 :LN 1k7jA 72 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=60788 # 2carA.153.11 read from T0547.t04.many.frag # found chain 2carA in training set T0547 153 :ITLTIEGLN 2carA 10 :IVFVTGNAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60789 # 1l1eA.153.89 read from T0547.t04.many.frag # found chain 1l1eA in template set Warning: unaligning (T0547)G159 (1l1eA)S96 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1l1eA 90 :VVGLTL T0547 160 :LN 1l1eA 97 :EN Number of specific fragments extracted= 2 number of extra gaps= 1 total=60791 # 1fo8A.153.5 read from T0547.t04.many.frag # found chain 1fo8A in training set Warning: unaligning (T0547)E158 (1fo8A)C115 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLTI 1fo8A 110 :ILVIA T0547 159 :GLN 1fo8A 116 :DRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=60793 # 1tt7A.153.177 read from T0547.t04.many.frag # found chain 1tt7A in template set Warning: unaligning (T0547)N161 (1tt7A)E186 because T (delta_L) conformation "forbidden" or filtered. T0547 153 :ITLTIEGL 1tt7A 178 :VVASTGNR Number of specific fragments extracted= 1 number of extra gaps= 1 total=60794 # 2dpmA.153.56 read from T0547.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)E158 (2dpmA)D62 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLTI 2dpmA 57 :DAVIN T0547 159 :GLN 2dpmA 63 :FNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60796 # 1zcjA.153.62 read from T0547.t04.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)G159 (1zcjA)D328 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1zcjA 322 :VVAVES T0547 160 :LN 1zcjA 329 :PK Number of specific fragments extracted= 2 number of extra gaps= 1 total=60798 # 1o08A.153.183 read from T0547.t04.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)E158 (1o08A)G1189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1o08A)R1190 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTI 1o08A 1184 :LPIGV T0547 160 :LN 1o08A 1191 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=60800 # 1rifA.153.159 read from T0547.t04.many.frag # found chain 1rifA in template set T0547 153 :ITLTIEGLN 1rifA 160 :ILIIVPTTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60801 # 2b7nA.153.184 read from T0547.t04.many.frag # found chain 2b7nA in template set Warning: unaligning (T0547)G159 (2b7nA)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLTIE 2b7nA 185 :IEIECE T0547 160 :LN 2b7nA 192 :FE Number of specific fragments extracted= 2 number of extra gaps= 1 total=60803 # 1wbhA.153.111 read from T0547.t04.many.frag # found chain 1wbhA in training set T0547 153 :ITLTIEGLN 1wbhA 111 :LIPGISTVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60804 # 2b4aA.153.17 read from T0547.t04.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)T156 (2b4aA)V9 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (2b4aA)E12 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITL 2b4aA 6 :VTL T0547 157 :IE 2b4aA 10 :ED T0547 160 :LN 2b4aA 13 :PS Number of specific fragments extracted= 3 number of extra gaps= 2 total=60807 # 1i1wA.153.16 read from T0547.t04.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)I153 because of BadResidue code BAD_PEPTIDE in next template residue (1i1wA)F18 Warning: unaligning (T0547)T154 because of BadResidue code BAD_PEPTIDE at template residue (1i1wA)F18 Warning: unaligning (T0547)L155 (1i1wA)G19 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIEGLN 1i1wA 20 :VATDQN Number of specific fragments extracted= 1 number of extra gaps= 1 total=60808 # 1qsgA.153.37 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)G159 (1qsgA)N41 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLTIE 1qsgA 35 :LAFTYQ T0547 160 :LN 1qsgA 42 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=60810 # 1a8y.153.125 read from T0547.t04.many.frag # found chain 1a8y in template set T0547 153 :ITLTIEGLN 1a8y 126 :PVELIEGER Number of specific fragments extracted= 1 number of extra gaps= 0 total=60811 # 2fcjA.154.6 read from T0547.t04.many.frag # found chain 2fcjA in training set Warning: unaligning (T0547)G159 (2fcjA)G12 because E (beta_S) conformation "forbidden" or filtered. T0547 154 :TLTIE 2fcjA 7 :VIIVE T0547 160 :LNE 2fcjA 13 :RSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=60813 # 1a8y.154.126 read from T0547.t04.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)E158 (1a8y)E131 because D (zeta) conformation "forbidden" or filtered. T0547 154 :TLTI 1a8y 127 :VELI T0547 159 :GLNE 1a8y 132 :GERE Number of specific fragments extracted= 2 number of extra gaps= 1 total=60815 # 1i4wA.154.84 read from T0547.t04.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)E158 (1i4wA)E77 because E (beta_S) conformation "forbidden" or filtered. T0547 154 :TLTI 1i4wA 73 :YSLL T0547 159 :GLNE 1i4wA 78 :KRSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=60817 # 1y1pA.154.38 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 154 :TLTIEGLNE 1y1pA 40 :RGTARSASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60818 # 1pii.154.160 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G159 (1pii)N166 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTIE 1pii 161 :LTEVS T0547 160 :LNE 1pii 167 :EEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=60820 # 1lyvA.154.119 read from T0547.t04.many.frag # found chain 1lyvA in training set Warning: unaligning (T0547)I157 (1lyvA)L285 because G (3-10) conformation "forbidden" or filtered. T0547 154 :TLT 1lyvA 282 :LAV T0547 158 :EGLNE 1lyvA 286 :ASSSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=60822 # 1hdoA.154.30 read from T0547.t04.many.frag # found chain 1hdoA in training set T0547 154 :TLTIEGLNE 1hdoA 31 :TVLVRDSSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60823 # 2af4C.154.43 read from T0547.t04.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)E158 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTI 2af4C 44 :IVLV T0547 159 :GLNE 2af4C 49 :NEAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=60825 # 1jqnA.154.501 read from T0547.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)G159 (1jqnA)T507 because E (beta_S) conformation "forbidden" or filtered. T0547 154 :TLTIE 1jqnA 502 :APLFE T0547 160 :LNE 1jqnA 508 :LDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=60827 # 1qwoA.154.132 read from T0547.t04.many.frag # found chain 1qwoA in training set Warning: unaligning (T0547)G159 (1qwoA)G139 because N (gamma') conformation "forbidden" or filtered. T0547 154 :TLTIE 1qwoA 134 :FIRAS T0547 160 :LNE 1qwoA 140 :SDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=60829 # 1em8A.154.39 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 154 :TLTIEGLNE 1em8A 40 :LIACEDEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60830 # 1k7jA.154.65 read from T0547.t04.many.frag # found chain 1k7jA in training set T0547 154 :TLTIEGLNE 1k7jA 66 :TLMCRDLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60831 # 1gu7A.154.195 read from T0547.t04.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)G159 (1gu7A)D223 because P (beta_P) conformation "forbidden" or filtered. T0547 154 :TLTIE 1gu7A 218 :ISVIR T0547 160 :LNE 1gu7A 224 :RPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=60833 # 1wbhA.154.112 read from T0547.t04.many.frag # found chain 1wbhA in training set T0547 154 :TLTIEGLNE 1wbhA 112 :IPGISTVSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60834 # 1ua4A.154.87 read from T0547.t04.many.frag # found chain 1ua4A in template set Warning: unaligning (T0547)G159 (1ua4A)S93 because P (beta_P) conformation "forbidden" or filtered. T0547 154 :TLTIE 1ua4A 88 :ELFVE T0547 160 :LNE 1ua4A 94 :CPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60836 # 1dg9A.154.86 read from T0547.t04.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)G159 (1dg9A)D92 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTIE 1dg9A 87 :YILCM T0547 160 :LNE 1dg9A 93 :ESN Number of specific fragments extracted= 2 number of extra gaps= 1 total=60838 # 1wiwA.154.217 read from T0547.t04.many.frag # found chain 1wiwA in template set T0547 154 :TLTIEGLNE 1wiwA 218 :AVLLGPGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60839 # 1v96A.154.110 read from T0547.t04.many.frag # found chain 1v96A in training set Warning: unaligning (T0547)I157 (1v96A)T114 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLT 1v96A 111 :LLV T0547 158 :EGLNE 1v96A 115 :DDPKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=60841 # 1o08A.154.184 read from T0547.t04.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)E158 (1o08A)G1189 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTI 1o08A 1185 :PIGV T0547 159 :GLNE 1o08A 1190 :RPED Number of specific fragments extracted= 2 number of extra gaps= 1 total=60843 # 2b7nA.154.185 read from T0547.t04.many.frag # found chain 2b7nA in template set Warning: unaligning (T0547)G159 (2b7nA)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTIE 2b7nA 186 :EIECE T0547 160 :LNE 2b7nA 192 :FEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=60845 # 7odcA.154.129 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I157 (7odcA)F133 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (7odcA)S135 because E (beta_S) conformation "forbidden" or filtered. T0547 154 :TLT 7odcA 130 :MMT T0547 158 :E 7odcA 134 :D T0547 160 :LNE 7odcA 136 :EIE Number of specific fragments extracted= 3 number of extra gaps= 2 total=60848 # 1c4oA.154.56 read from T0547.t04.many.frag # found chain 1c4oA in template set Warning: unaligning (T0547)G159 (1c4oA)N63 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTIE 1c4oA 58 :LVLAP T0547 160 :LNE 1c4oA 64 :KIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60850 # 1yrbA.154.140 read from T0547.t04.many.frag # found chain 1yrbA in training set T0547 154 :TLTIEGLNE 1yrbA 127 :VVYISDPEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60851 # 1epuA.154.140 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)I157 (1epuA)L144 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1epuA)S146 because D (zeta) conformation "forbidden" or filtered. T0547 154 :TLT 1epuA 141 :IFS T0547 158 :E 1epuA 145 :D T0547 160 :LNE 1epuA 147 :PDT Number of specific fragments extracted= 3 number of extra gaps= 2 total=60854 # 1l1eA.154.90 read from T0547.t04.many.frag # found chain 1l1eA in template set T0547 154 :TLTIEGLNE 1l1eA 91 :VGLTLSENQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60855 # 1q0uA.154.75 read from T0547.t04.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)G159 (1q0uA)T81 because E (beta_S) conformation "forbidden" or filtered. T0547 154 :TLTIE 1q0uA 76 :VITAP T0547 160 :LNE 1q0uA 82 :REL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60857 # 2carA.154.12 read from T0547.t04.many.frag # found chain 2carA in training set Warning: unaligning (T0547)G159 (2carA)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTIE 2carA 11 :VFVTG T0547 160 :LNE 2carA 17 :AKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=60859 # 1rifA.154.160 read from T0547.t04.many.frag # found chain 1rifA in template set T0547 154 :TLTIEGLNE 1rifA 161 :LIIVPTTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60860 # 1fo8A.154.6 read from T0547.t04.many.frag # found chain 1fo8A in training set Warning: unaligning (T0547)E158 (1fo8A)C115 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTI 1fo8A 111 :LVIA T0547 159 :GLNE 1fo8A 116 :DRST Number of specific fragments extracted= 2 number of extra gaps= 1 total=60862 # 1nw3A.154.181 read from T0547.t04.many.frag # found chain 1nw3A in template set T0547 154 :TLTIEGLNE 1nw3A 182 :HYGVEKADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60863 # 7odcA.155.130 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G159 (7odcA)S135 because E (beta_S) conformation "forbidden" or filtered. T0547 155 :LTIE 7odcA 131 :MTFD T0547 160 :LNEL 7odcA 136 :EIEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60865 # 1knwA.155.118 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G159 (1knwA)S123 because E (beta_S) conformation "forbidden" or filtered. T0547 155 :LTIE 1knwA 119 :VNAG T0547 160 :LNEL 1knwA 124 :VDML Number of specific fragments extracted= 2 number of extra gaps= 1 total=60867 # 1wmmA.155.4 read from T0547.t04.many.frag # found chain 1wmmA in template set T0547 155 :LTIEGLNEL 1wmmA 5 :ICITNRENW Number of specific fragments extracted= 1 number of extra gaps= 0 total=60868 # 1a8y.155.127 read from T0547.t04.many.frag # found chain 1a8y in template set T0547 155 :LTIEGLNEL 1a8y 128 :ELIEGEREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60869 # 1em8A.155.40 read from T0547.t04.many.frag # found chain 1em8A in template set Warning: unaligning (T0547)G159 (1em8A)D45 because E (beta_S) conformation "forbidden" or filtered. T0547 155 :LTIE 1em8A 41 :IACE T0547 160 :LNEL 1em8A 46 :EKQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60871 # 1y1pA.155.39 read from T0547.t04.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G159 (1y1pA)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LTIE 1y1pA 41 :GTAR T0547 160 :LNEL 1y1pA 46 :ASKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60873 # 1jqnA.155.502 read from T0547.t04.many.frag # found chain 1jqnA in template set T0547 155 :LTIEGLNEL 1jqnA 503 :PLFETLDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60874 # 2b7nA.155.186 read from T0547.t04.many.frag # found chain 2b7nA in template set T0547 155 :LTIEGLNEL 2b7nA 187 :IECESFEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60875 # 1lyvA.155.120 read from T0547.t04.many.frag # found chain 1lyvA in training set T0547 155 :LTIEGLNEL 1lyvA 283 :AVLASSSEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=60876 # 1wbhA.155.113 read from T0547.t04.many.frag # found chain 1wbhA in training set T0547 155 :LTIEGLNEL 1wbhA 113 :PGISTVSEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60877 # 1wouA.155.6 read from T0547.t04.many.frag # found chain 1wouA in training set Warning: unaligning (T0547)G159 (1wouA)G11 because S (epsilon) conformation "forbidden" or filtered. T0547 155 :LTIE 1wouA 7 :VSVS T0547 160 :LNEL 1wouA 12 :FEEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=60879 # 1gxjA.155.60 read from T0547.t04.many.frag # found chain 1gxjA in template set T0547 155 :LTIEGLNEL 1gxjA 545 :IVVRNVDTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60880 # 1epuA.155.141 read from T0547.t04.many.frag # found chain 1epuA in template set T0547 155 :LTIEGLNEL 1epuA 142 :FSLDSPDTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60881 # 1ct5A.155.110 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G159 (1ct5A)S116 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LTIE 1ct5A 112 :ETID T0547 160 :LNEL 1ct5A 117 :LKKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60883 # 1ptmA.155.34 read from T0547.t04.many.frag # found chain 1ptmA in template set T0547 155 :LTIEGLNEL 1ptmA 35 :VVCADATLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60884 # 2carA.155.13 read from T0547.t04.many.frag # found chain 2carA in training set Warning: unaligning (T0547)G159 (2carA)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LTIE 2carA 12 :FVTG T0547 160 :LNEL 2carA 17 :AKKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60886 # 2tpsA.155.81 read from T0547.t04.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)E158 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)D94 Warning: unaligning (T0547)G159 because of BadResidue code BAD_PEPTIDE at template residue (2tpsA)D94 T0547 155 :LTI 2tpsA 90 :IVN T0547 160 :LNEL 2tpsA 95 :VELA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60888 # 1wn2A.155.59 read from T0547.t04.many.frag # found chain 1wn2A in training set Warning: unaligning (T0547)I157 (1wn2A)V62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1wn2A)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LT 1wn2A 60 :VK T0547 158 :E 1wn2A 63 :E T0547 160 :LNEL 1wn2A 65 :EEEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=60891 # 1pii.155.161 read from T0547.t04.many.frag # found chain 1pii in template set T0547 155 :LTIEGLNEL 1pii 162 :TEVSNEEEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60892 # 1q0uA.155.76 read from T0547.t04.many.frag # found chain 1q0uA in template set T0547 155 :LTIEGLNEL 1q0uA 77 :ITAPTRELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60893 # 1rjdA.155.124 read from T0547.t04.many.frag # found chain 1rjdA in training set Warning: unaligning (T0547)E158 (1rjdA)D128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1rjdA)Y129 because P (beta_P) conformation "forbidden" or filtered. T0547 155 :LTI 1rjdA 125 :VDI T0547 160 :LNEL 1rjdA 130 :NESV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60895 # 1v96A.155.111 read from T0547.t04.many.frag # found chain 1v96A in training set T0547 155 :LTIEGLNEL 1v96A 112 :LVTDDPKRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=60896 # 1k3yA.155.31 read from T0547.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0547)G159 (1k3yA)S37 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LTIE 1k3yA 33 :KFIK T0547 160 :LNEL 1k3yA 38 :AEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60898 # 1i1wA.155.18 read from T0547.t04.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)E158 (1i1wA)T22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1i1wA)D23 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LTI 1i1wA 19 :GVA T0547 160 :LNEL 1i1wA 24 :QNRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60900 # 1zcjA.155.64 read from T0547.t04.many.frag # found chain 1zcjA in template set T0547 155 :LTIEGLNEL 1zcjA 324 :AVESDPKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60901 # 1rifA.155.161 read from T0547.t04.many.frag # found chain 1rifA in template set T0547 155 :LTIEGLNEL 1rifA 162 :IIVPTTALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60902 # 1ua4A.155.88 read from T0547.t04.many.frag # found chain 1ua4A in template set T0547 155 :LTIEGLNEL 1ua4A 89 :LFVESCPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60903 # 1uslA.155.95 read from T0547.t04.many.frag # found chain 1uslA in template set T0547 155 :LTIEGLNEL 1uslA 88 :ALAWSVQTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60904 # 2b4aA.155.19 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 155 :LTIEGLNEL 2b4aA 8 :LVEDEPSHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60905 # 2fcjA.155.7 read from T0547.t04.many.frag # found chain 2fcjA in training set T0547 155 :LTIEGLNEL 2fcjA 8 :IIVEGRSDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60906 # 1knwA.156.119 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 156 :TIEGLNELE 1knwA 120 :NAGSVDMLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=60907 # 7odcA.156.131 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 156 :TIEGLNELE 7odcA 132 :TFDSEIELM Number of specific fragments extracted= 1 number of extra gaps= 0 total=60908 # 1epuA.156.142 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)E158 (1epuA)D145 because L (left) conformation "forbidden" or filtered. T0547 156 :TI 1epuA 143 :SL T0547 159 :GLNELE 1epuA 146 :SPDTFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=60910 # 1pii.156.162 read from T0547.t04.many.frag # found chain 1pii in template set T0547 156 :TIEGLNELE 1pii 163 :EVSNEEEQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60911 # 1lyvA.156.121 read from T0547.t04.many.frag # found chain 1lyvA in training set Warning: unaligning (T0547)G159 (1lyvA)S287 because P (beta_P) conformation "forbidden" or filtered. T0547 156 :TIE 1lyvA 284 :VLA T0547 160 :LNELE 1lyvA 288 :SSEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60913 # 2b7nA.156.187 read from T0547.t04.many.frag # found chain 2b7nA in template set Warning: unaligning (T0547)G159 (2b7nA)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 2b7nA 188 :ECE T0547 160 :LNELE 2b7nA 192 :FEEAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=60915 # 1y1pA.156.40 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 156 :TIEGLNELE 1y1pA 42 :TARSASKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60916 # 1ct5A.156.111 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 156 :TIEGLNELE 1ct5A 113 :TIDSLKKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60917 # 1gxjA.156.61 read from T0547.t04.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G159 (1gxjA)N549 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 1gxjA 546 :VVR T0547 160 :LNELE 1gxjA 550 :VDTAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=60919 # 1jqnA.156.503 read from T0547.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)G159 (1jqnA)T507 because E (beta_S) conformation "forbidden" or filtered. T0547 156 :TIE 1jqnA 504 :LFE T0547 160 :LNELE 1jqnA 508 :LDDLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=60921 # 1a8y.156.128 read from T0547.t04.many.frag # found chain 1a8y in template set T0547 156 :TIEGLNELE 1a8y 129 :LIEGERELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60922 # 1wbhA.156.114 read from T0547.t04.many.frag # found chain 1wbhA in training set T0547 156 :TIEGLNELE 1wbhA 114 :GISTVSELM Number of specific fragments extracted= 1 number of extra gaps= 0 total=60923 # 1wiwA.156.219 read from T0547.t04.many.frag # found chain 1wiwA in template set Warning: unaligning (T0547)L160 (1wiwA)G224 because S (epsilon) conformation "forbidden" or filtered. T0547 156 :TIEG 1wiwA 220 :LLGP T0547 161 :NELE 1wiwA 225 :EEAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60925 # 1k7jA.156.67 read from T0547.t04.many.frag # found chain 1k7jA in training set T0547 156 :TIEGLNELE 1k7jA 68 :MCRDLSELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=60926 # 1em8A.156.41 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 156 :TIEGLNELE 1em8A 42 :ACEDEKQAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=60927 # 1wn2A.156.60 read from T0547.t04.many.frag # found chain 1wn2A in training set T0547 156 :TIEGLNELE 1wn2A 61 :KVESEEELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=60928 # 2carA.156.14 read from T0547.t04.many.frag # found chain 2carA in training set T0547 156 :TIEGLNELE 2carA 13 :VTGNAKKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60929 # 1wmmA.156.5 read from T0547.t04.many.frag # found chain 1wmmA in template set Warning: unaligning (T0547)E158 (1wmmA)T8 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TI 1wmmA 6 :CI T0547 159 :GLNELE 1wmmA 9 :NRENWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=60931 # 1k3yA.156.32 read from T0547.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0547)G159 (1k3yA)S37 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 1k3yA 34 :FIK T0547 160 :LNELE 1k3yA 38 :AEDLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=60933 # 1q0uA.156.77 read from T0547.t04.many.frag # found chain 1q0uA in template set T0547 156 :TIEGLNELE 1q0uA 78 :TAPTRELAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60934 # 1tf5A.156.437 read from T0547.t04.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)I157 (1tf5A)T436 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1tf5A)A438 because E (beta_S) conformation "forbidden" or filtered. T0547 156 :T 1tf5A 435 :G T0547 158 :E 1tf5A 437 :V T0547 160 :LNELE 1tf5A 439 :VETSE Number of specific fragments extracted= 3 number of extra gaps= 2 total=60937 # 1rcqA.156.97 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G159 (1rcqA)C101 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 1rcqA 98 :VVH T0547 160 :LNELE 1rcqA 102 :AWQLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=60939 # 1g60A.156.239 read from T0547.t04.many.frag # found chain 1g60A in template set Warning: unaligning (T0547)G159 (1g60A)N243 because P (beta_P) conformation "forbidden" or filtered. T0547 156 :TIE 1g60A 240 :CDM T0547 160 :LNELE 1g60A 244 :AEYVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=60941 # 1vkfA.156.87 read from T0547.t04.many.frag # found chain 1vkfA in training set Warning: unaligning (T0547)G159 (1vkfA)K79 because N (gamma') conformation "forbidden" or filtered. T0547 156 :TIE 1vkfA 76 :ITI T0547 160 :LNELE 1vkfA 80 :PKNYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60943 # 1zcjA.156.65 read from T0547.t04.many.frag # found chain 1zcjA in template set T0547 156 :TIEGLNELE 1zcjA 325 :VESDPKQLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=60944 # 2b4aA.156.20 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 156 :TIEGLNELE 2b4aA 9 :VEDEPSHAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60945 # 1y5mA.156.47 read from T0547.t04.many.frag # found chain 1y5mA in template set T0547 156 :TIEGLNELE 1y5mA 64 :TARSEEGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60946 # 1wouA.156.7 read from T0547.t04.many.frag # found chain 1wouA in training set T0547 156 :TIEGLNELE 1wouA 8 :SVSGFEEFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=60947 # 1dg9A.156.88 read from T0547.t04.many.frag # found chain 1dg9A in template set T0547 156 :TIEGLNELE 1dg9A 89 :LCMDESNLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=60948 # 1rifA.156.162 read from T0547.t04.many.frag # found chain 1rifA in template set T0547 156 :TIEGLNELE 1rifA 163 :IVPTTALTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=60949 # 2b7nA.157.188 read from T0547.t04.many.frag # found chain 2b7nA in template set Warning: unaligning (T0547)G159 (2b7nA)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 2b7nA 189 :CE T0547 160 :LNELEA 2b7nA 192 :FEEAKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=60951 # 1wbhA.157.115 read from T0547.t04.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)G159 (1wbhA)T117 because E (beta_S) conformation "forbidden" or filtered. T0547 157 :IE 1wbhA 115 :IS T0547 160 :LNELEA 1wbhA 118 :VSELML Number of specific fragments extracted= 2 number of extra gaps= 1 total=60953 # 1wiwA.157.220 read from T0547.t04.many.frag # found chain 1wiwA in template set Warning: unaligning (T0547)E158 (1wiwA)G222 because S (epsilon) conformation "forbidden" or filtered. T0547 157 :I 1wiwA 221 :L T0547 159 :GLNELEA 1wiwA 223 :PGEEAAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=60955 # 1knwA.157.120 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 157 :IEGLNELEA 1knwA 121 :AGSVDMLDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60956 # 1wn2A.157.61 read from T0547.t04.many.frag # found chain 1wn2A in training set T0547 157 :IEGLNELEA 1wn2A 62 :VESEEELFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60957 # 1ct5A.157.112 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G159 (1ct5A)S116 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1ct5A 114 :ID T0547 160 :LNELEA 1ct5A 117 :LKKAKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=60959 # 7odcA.157.132 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 157 :IEGLNELEA 7odcA 133 :FDSEIELMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60960 # 1y1pA.157.41 read from T0547.t04.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G159 (1y1pA)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1y1pA 43 :AR T0547 160 :LNELEA 1y1pA 46 :ASKLAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=60962 # 1jqnA.157.504 read from T0547.t04.many.frag # found chain 1jqnA in template set T0547 157 :IEGLNELEA 1jqnA 505 :FETLDDLNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=60963 # 1gxjA.157.62 read from T0547.t04.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G159 (1gxjA)N549 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1gxjA 547 :VR T0547 160 :LNELEA 1gxjA 550 :VDTAKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60965 # 2carA.157.15 read from T0547.t04.many.frag # found chain 2carA in training set Warning: unaligning (T0547)G159 (2carA)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 2carA 14 :TG T0547 160 :LNELEA 2carA 17 :AKKLEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=60967 # 1epuA.157.143 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)G159 (1epuA)S146 because D (zeta) conformation "forbidden" or filtered. T0547 157 :IE 1epuA 144 :LD T0547 160 :LNELEA 1epuA 147 :PDTFQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60969 # 1zcjA.157.66 read from T0547.t04.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)G159 (1zcjA)D328 because P (beta_P) conformation "forbidden" or filtered. T0547 157 :IE 1zcjA 326 :ES T0547 160 :LNELEA 1zcjA 329 :PKQLDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=60971 # 1k3yA.157.33 read from T0547.t04.many.frag # found chain 1k3yA in training set T0547 157 :IEGLNELEA 1k3yA 35 :IKSAEDLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=60972 # 1k7jA.157.68 read from T0547.t04.many.frag # found chain 1k7jA in training set T0547 157 :IEGLNELEA 1k7jA 69 :CRDLSELST Number of specific fragments extracted= 1 number of extra gaps= 0 total=60973 # 1tf5A.157.438 read from T0547.t04.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)I157 (1tf5A)T436 because Y (epsilon') conformation "forbidden" or filtered. T0547 158 :EGLNELEA 1tf5A 437 :VAVETSEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=60974 # 1em8A.157.42 read from T0547.t04.many.frag # found chain 1em8A in template set Warning: unaligning (T0547)G159 (1em8A)D45 because E (beta_S) conformation "forbidden" or filtered. T0547 157 :IE 1em8A 43 :CE T0547 160 :LNELEA 1em8A 46 :EKQAYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=60976 # 2b4aA.157.21 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 157 :IEGLNELEA 2b4aA 10 :EDEPSHATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60977 # 1pii.157.163 read from T0547.t04.many.frag # found chain 1pii in template set T0547 157 :IEGLNELEA 1pii 164 :VSNEEEQER Number of specific fragments extracted= 1 number of extra gaps= 0 total=60978 # 1a8y.157.129 read from T0547.t04.many.frag # found chain 1a8y in template set T0547 157 :IEGLNELEA 1a8y 130 :IEGERELQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=60979 # 1dg9A.157.89 read from T0547.t04.many.frag # found chain 1dg9A in template set T0547 157 :IEGLNELEA 1dg9A 90 :CMDESNLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=60980 # 1q0uA.157.78 read from T0547.t04.many.frag # found chain 1q0uA in template set T0547 157 :IEGLNELEA 1q0uA 79 :APTRELATQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=60981 # 1nytA.157.148 read from T0547.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)G159 (1nytA)T151 because N (gamma') conformation "forbidden" or filtered. T0547 157 :IE 1nytA 149 :NR T0547 160 :LNELEA 1nytA 152 :VSRAEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=60983 # 1izcA.157.125 read from T0547.t04.many.frag # found chain 1izcA in training set T0547 157 :IEGLNELEA 1izcA 126 :VETVEEVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=60984 # 1g60A.157.240 read from T0547.t04.many.frag # found chain 1g60A in template set Warning: unaligning (T0547)G159 (1g60A)N243 because P (beta_P) conformation "forbidden" or filtered. T0547 157 :IE 1g60A 241 :DM T0547 160 :LNELEA 1g60A 244 :AEYVNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=60986 # 1reqB.157.516 read from T0547.t04.many.frag # found chain 1reqB in template set Warning: unaligning (T0547)E158 (1reqB)G519 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E164 because of BadResidue code BAD_PEPTIDE in next template residue (1reqB)G526 Warning: unaligning (T0547)A165 because of BadResidue code BAD_PEPTIDE at template residue (1reqB)G526 T0547 157 :I 1reqB 518 :L T0547 159 :GLNEL 1reqB 520 :TRRDF Number of specific fragments extracted= 2 number of extra gaps= 2 total=60988 # 1vhuA.157.183 read from T0547.t04.many.frag # found chain 1vhuA in training set Warning: unaligning (T0547)G159 (1vhuA)D184 because P (beta_P) conformation "forbidden" or filtered. T0547 157 :IE 1vhuA 182 :IY T0547 160 :LNELEA 1vhuA 185 :RKSAEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60990 # 1wmmA.157.6 read from T0547.t04.many.frag # found chain 1wmmA in template set T0547 157 :IEGLNELEA 1wmmA 7 :ITNRENWEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=60991 # 1vkfA.157.88 read from T0547.t04.many.frag # found chain 1vkfA in training set Warning: unaligning (T0547)G159 (1vkfA)K79 because N (gamma') conformation "forbidden" or filtered. T0547 157 :IE 1vkfA 77 :TI T0547 160 :LNELEA 1vkfA 80 :PKNYVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=60993 # 1y5mA.157.48 read from T0547.t04.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)I157 (1y5mA)A65 because Y (epsilon') conformation "forbidden" or filtered. T0547 158 :EGLNELEA 1y5mA 66 :RSEEGLQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=60994 # 1ct5A.158.113 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 158 :EGLNELEAI 1ct5A 115 :DSLKKAKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60995 # 1em8A.158.43 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 158 :EGLNELEAI 1em8A 44 :EDEKQAYRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60996 # 1knwA.158.121 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 158 :EGLNELEAI 1knwA 122 :GSVDMLDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60997 # 1nytA.158.149 read from T0547.t04.many.frag # found chain 1nytA in training set T0547 158 :EGLNELEAI 1nytA 150 :RTVSRAEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60998 # 1wn2A.158.62 read from T0547.t04.many.frag # found chain 1wn2A in training set T0547 158 :EGLNELEAI 1wn2A 63 :ESEEELFKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=60999 # 1y1pA.158.42 read from T0547.t04.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G159 (1y1pA)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 158 :E 1y1pA 44 :R T0547 160 :LNELEAI 1y1pA 46 :ASKLANL Number of specific fragments extracted= 2 number of extra gaps= 1 total=61001 # 1y5mA.158.49 read from T0547.t04.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)G159 (1y5mA)S67 because P (beta_P) conformation "forbidden" or filtered. T0547 158 :E 1y5mA 66 :R T0547 160 :LNELEAI 1y5mA 68 :EEGLQKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=61003 # 7odcA.158.133 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 158 :EGLNELEAI 7odcA 134 :DSEIELMKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=61004 # 1wiwA.158.221 read from T0547.t04.many.frag # found chain 1wiwA in template set Warning: unaligning (T0547)G159 (1wiwA)P223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L160 (1wiwA)G224 because S (epsilon) conformation "forbidden" or filtered. T0547 158 :E 1wiwA 222 :G T0547 161 :NELEAI 1wiwA 225 :EEAALA Number of specific fragments extracted= 2 number of extra gaps= 1 total=61006 # 2b7nA.158.189 read from T0547.t04.many.frag # found chain 2b7nA in template set T0547 158 :EGLNELEAI 2b7nA 190 :ESFEEAKNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61007 # 1izcA.158.126 read from T0547.t04.many.frag # found chain 1izcA in training set T0547 158 :EGLNELEAI 1izcA 127 :ETVEEVREF Number of specific fragments extracted= 1 number of extra gaps= 0 total=61008 # 2carA.158.16 read from T0547.t04.many.frag # found chain 2carA in training set T0547 158 :EGLNELEAI 2carA 15 :GNAKKLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=61009 # 1reqB.158.517 read from T0547.t04.many.frag # found chain 1reqB in template set Warning: unaligning (T0547)E164 because of BadResidue code BAD_PEPTIDE in next template residue (1reqB)G526 Warning: unaligning (T0547)A165 because of BadResidue code BAD_PEPTIDE at template residue (1reqB)G526 T0547 158 :EGLNEL 1reqB 519 :GTRRDF T0547 166 :I 1reqB 527 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=61011 # 1wbhA.158.116 read from T0547.t04.many.frag # found chain 1wbhA in training set T0547 158 :EGLNELEAI 1wbhA 116 :STVSELMLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=61012 # 1tf5A.158.439 read from T0547.t04.many.frag # found chain 1tf5A in template set T0547 158 :EGLNELEAI 1tf5A 437 :VAVETSELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=61013 # 1gxjA.158.63 read from T0547.t04.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G159 (1gxjA)N549 because Y (epsilon') conformation "forbidden" or filtered. T0547 158 :E 1gxjA 548 :R T0547 160 :LNELEAI 1gxjA 550 :VDTAKAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=61015 # 1k3yA.158.34 read from T0547.t04.many.frag # found chain 1k3yA in training set T0547 158 :EGLNELEAI 1k3yA 36 :KSAEDLDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61016 # 1dg9A.158.90 read from T0547.t04.many.frag # found chain 1dg9A in template set T0547 158 :EGLNELEAI 1dg9A 91 :MDESNLRDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61017 # 1iuqA.158.113 read from T0547.t04.many.frag # found chain 1iuqA in training set T0547 158 :EGLNELEAI 1iuqA 115 :GNLSLFKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=61018 # 1g60A.158.241 read from T0547.t04.many.frag # found chain 1g60A in template set T0547 158 :EGLNELEAI 1g60A 242 :MNAEYVNQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61019 # 1q0uA.158.79 read from T0547.t04.many.frag # found chain 1q0uA in template set T0547 158 :EGLNELEAI 1q0uA 80 :PTRELATQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=61020 # 1vhuA.158.184 read from T0547.t04.many.frag # found chain 1vhuA in training set T0547 158 :EGLNELEAI 1vhuA 183 :YDRKSAEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61021 # 2b4aA.158.22 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 158 :EGLNELEAI 2b4aA 11 :DEPSHATLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=61022 # 1ypqA.158.47 read from T0547.t04.many.frag # found chain 1ypqA in training set T0547 158 :EGLNELEAI 1ypqA 183 :NSTADLDFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=61023 # 1zcjA.158.67 read from T0547.t04.many.frag # found chain 1zcjA in template set T0547 158 :EGLNELEAI 1zcjA 327 :SDPKQLDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61024 # 1orjA.158.13 read from T0547.t04.many.frag # found chain 1orjA in template set T0547 158 :EGLNELEAI 1orjA 1014 :ETATPLEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=61025 # 1h6dA.158.184 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 158 :EGLNELEAI 1h6dA 185 :TSVADCQRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=61026 # 2b8nA.158.147 read from T0547.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)G159 (2b8nA)S137 because P (beta_P) conformation "forbidden" or filtered. T0547 158 :E 2b8nA 136 :V T0547 160 :LNELEAI 2b8nA 138 :LEEIQKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=61028 # 1yiiA.158.115 read from T0547.t04.many.frag # found chain 1yiiA in training set Warning: unaligning (T0547)E158 (1yiiA)R117 because P (beta_P) conformation "forbidden" or filtered. T0547 159 :GLNELEAI 1yiiA 118 :TPAEVQNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=61029 # 1wmmA.158.7 read from T0547.t04.many.frag # found chain 1wmmA in template set T0547 158 :EGLNELEAI 1wmmA 8 :TNRENWEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=61030 # 1y1pA.159.43 read from T0547.t04.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G159 (1y1pA)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 160 :LNELEAII 1y1pA 46 :ASKLANLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=61031 # 7odcA.159.134 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G159 (7odcA)S135 because E (beta_S) conformation "forbidden" or filtered. T0547 160 :LNELEAII 7odcA 136 :EIELMKVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=61032 # 1wiwA.159.222 read from T0547.t04.many.frag # found chain 1wiwA in template set Warning: unaligning (T0547)L160 (1wiwA)G224 because S (epsilon) conformation "forbidden" or filtered. T0547 159 :G 1wiwA 223 :P T0547 161 :NELEAII 1wiwA 225 :EEAALAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=61034 # 1izcA.159.127 read from T0547.t04.many.frag # found chain 1izcA in training set T0547 159 :GLNELEAII 1izcA 128 :TVEEVREFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=61035 # 1wn2A.159.63 read from T0547.t04.many.frag # found chain 1wn2A in training set Warning: unaligning (T0547)G159 (1wn2A)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 160 :LNELEAII 1wn2A 65 :EEELFKLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=61036 # 1em8A.159.44 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 159 :GLNELEAII 1em8A 45 :DEKQAYRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=61037 # 1knwA.159.122 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G159 (1knwA)S123 because E (beta_S) conformation "forbidden" or filtered. T0547 160 :LNELEAII 1knwA 124 :VDMLDQLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=61038 # 2b6cA.159.120 read from T0547.t04.many.frag # found chain 2b6cA in template set T0547 159 :GLNELEAII 2b6cA 118 :HLTELPTIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=61039 # 1y5mA.159.50 read from T0547.t04.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)G159 (1y5mA)S67 because P (beta_P) conformation "forbidden" or filtered. T0547 160 :LNELEAII 1y5mA 68 :EEGLQKVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=61040 # 1h6dA.159.185 read from T0547.t04.many.frag # found chain 1h6dA in template set Warning: unaligning (T0547)G159 (1h6dA)S186 because E (beta_S) conformation "forbidden" or filtered. T0547 160 :LNELEAII 1h6dA 187 :VADCQRMI Number of specific fragments extracted= 1 number of extra gaps= 1 total=61041 # 1ijbA.159.26 read from T0547.t04.many.frag # found chain 1ijbA in training set Warning: unaligning (T0547)G159 (1ijbA)S526 because P (beta_P) conformation "forbidden" or filtered. T0547 160 :LNELEAII 1ijbA 527 :EAEFEVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=61042 # 2bbrA.159.107 read from T0547.t04.many.frag # found chain 2bbrA in training set T0547 159 :GLNELEAII 2bbrA 108 :DSSELRALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61043 # 1reqB.159.518 read from T0547.t04.many.frag # found chain 1reqB in template set Warning: unaligning (T0547)G159 (1reqB)T520 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E164 because of BadResidue code BAD_PEPTIDE in next template residue (1reqB)G526 Warning: unaligning (T0547)A165 because of BadResidue code BAD_PEPTIDE at template residue (1reqB)G526 T0547 160 :LNEL 1reqB 521 :RRDF T0547 166 :II 1reqB 527 :RE Number of specific fragments extracted= 2 number of extra gaps= 2 total=61045 # 1e0tA.159.195 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 159 :GLNELEAII 1e0tA 196 :KRSDVIEIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61046 # 1ypqA.159.48 read from T0547.t04.many.frag # found chain 1ypqA in training set T0547 159 :GLNELEAII 1ypqA 184 :STADLDFIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61047 # 1dg9A.159.91 read from T0547.t04.many.frag # found chain 1dg9A in template set T0547 159 :GLNELEAII 1dg9A 92 :DESNLRDLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=61048 # 1ct5A.159.114 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G159 (1ct5A)S116 because Y (epsilon') conformation "forbidden" or filtered. T0547 160 :LNELEAII 1ct5A 117 :LKKAKKLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=61049 # 1gxjA.159.64 read from T0547.t04.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G159 (1gxjA)N549 because Y (epsilon') conformation "forbidden" or filtered. T0547 160 :LNELEAII 1gxjA 550 :VDTAKAIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=61050 # 1yiiA.159.116 read from T0547.t04.many.frag # found chain 1yiiA in training set Warning: unaligning (T0547)G159 (1yiiA)T118 because P (beta_P) conformation "forbidden" or filtered. T0547 160 :LNELEAII 1yiiA 119 :PAEVQNIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=61051 # 2b4aA.159.23 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 159 :GLNELEAII 2b4aA 12 :EPSHATLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61052 # 1iuqA.159.114 read from T0547.t04.many.frag # found chain 1iuqA in training set T0547 159 :GLNELEAII 1iuqA 116 :NLSLFKDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61053 # 1vhuA.159.185 read from T0547.t04.many.frag # found chain 1vhuA in training set T0547 159 :GLNELEAII 1vhuA 184 :DRKSAEVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61054 # 1k3yA.159.35 read from T0547.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0547)G159 (1k3yA)S37 because Y (epsilon') conformation "forbidden" or filtered. T0547 160 :LNELEAII 1k3yA 38 :AEDLDKLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=61055 # 2carA.159.17 read from T0547.t04.many.frag # found chain 2carA in training set T0547 159 :GLNELEAII 2carA 16 :NAKKLEEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=61056 # 1jubA.159.169 read from T0547.t04.many.frag # found chain 1jubA in training set T0547 159 :GLNELEAII 1jubA 170 :DLVHFDIMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61057 # 1tf5A.159.440 read from T0547.t04.many.frag # found chain 1tf5A in template set T0547 159 :GLNELEAII 1tf5A 438 :AVETSELIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61058 # 1jakA.159.171 read from T0547.t04.many.frag # found chain 1jakA in training set T0547 159 :GLNELEAII 1jakA 166 :GVDEVKRYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=61059 # 1vliA.159.168 read from T0547.t04.many.frag # found chain 1vliA in template set T0547 159 :GLNELEAII 1vliA 157 :EISDVHEAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=61060 # 2b7nA.159.190 read from T0547.t04.many.frag # found chain 2b7nA in template set Warning: unaligning (T0547)G159 (2b7nA)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 160 :LNELEAII 2b7nA 192 :FEEAKNAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=61061 # 2b8nA.159.148 read from T0547.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)G159 (2b8nA)S137 because P (beta_P) conformation "forbidden" or filtered. T0547 160 :LNELEAII 2b8nA 138 :LEEIQKLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=61062 # 1ct5A.160.115 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 160 :LNELEAIID 1ct5A 117 :LKKAKKLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61063 # 1em8A.160.45 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 160 :LNELEAIID 1em8A 46 :EKQAYRLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61064 # 1knwA.160.123 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 160 :LNELEAIID 1knwA 124 :VDMLDQLGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61065 # 1wn2A.160.64 read from T0547.t04.many.frag # found chain 1wn2A in training set T0547 160 :LNELEAIID 1wn2A 65 :EEELFKLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61066 # 1y1pA.160.44 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 160 :LNELEAIID 1y1pA 46 :ASKLANLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61067 # 7odcA.160.135 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 160 :LNELEAIID 7odcA 136 :EIELMKVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61068 # 1h6dA.160.186 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 160 :LNELEAIID 1h6dA 187 :VADCQRMID Number of specific fragments extracted= 1 number of extra gaps= 0 total=61069 # 1uf3A.160.17 read from T0547.t04.many.frag # found chain 1uf3A in template set T0547 160 :LNELEAIID 1uf3A 18 :LEALEKFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61070 # 1izcA.160.128 read from T0547.t04.many.frag # found chain 1izcA in training set T0547 160 :LNELEAIID 1izcA 129 :VEEVREFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61071 # 1wiwA.160.223 read from T0547.t04.many.frag # found chain 1wiwA in template set T0547 160 :LNELEAIID 1wiwA 224 :GEEAALAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61072 # 1iuqA.160.115 read from T0547.t04.many.frag # found chain 1iuqA in training set T0547 160 :LNELEAIID 1iuqA 117 :LSLFKDIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61073 # 1nytA.160.151 read from T0547.t04.many.frag # found chain 1nytA in training set T0547 160 :LNELEAIID 1nytA 152 :VSRAEELAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61074 # 1f74A.160.22 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 160 :LNELEAIID 1f74A 23 :EKGLRQIIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61075 # 1yiiA.160.117 read from T0547.t04.many.frag # found chain 1yiiA in training set T0547 160 :LNELEAIID 1yiiA 119 :PAEVQNIKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61076 # 1s2oA.160.17 read from T0547.t04.many.frag # found chain 1s2oA in training set T0547 160 :LNELEAIID 1s2oA 18 :QQALEHLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61077 # 1orjA.160.15 read from T0547.t04.many.frag # found chain 1orjA in template set T0547 160 :LNELEAIID 1orjA 1016 :ATPLEQIIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61078 # 2b8nA.160.149 read from T0547.t04.many.frag # found chain 2b8nA in template set T0547 160 :LNELEAIID 2b8nA 138 :LEEIQKLTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61079 # 1ijbA.160.27 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 160 :LNELEAIID 1ijbA 527 :EAEFEVLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61080 # 2bbrA.160.108 read from T0547.t04.many.frag # found chain 2bbrA in training set T0547 160 :LNELEAIID 2bbrA 109 :SSELRALRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61081 # 2b6cA.160.121 read from T0547.t04.many.frag # found chain 2b6cA in template set T0547 160 :LNELEAIID 2b6cA 119 :LTELPTIFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61082 # 1e0tA.160.196 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 160 :LNELEAIID 1e0tA 197 :RSDVIEIRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61083 # 1vliA.160.169 read from T0547.t04.many.frag # found chain 1vliA in template set T0547 160 :LNELEAIID 1vliA 158 :ISDVHEAWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61084 # 1zdyA.160.26 read from T0547.t04.many.frag # found chain 1zdyA in training set T0547 160 :LNELEAIID 1zdyA 27 :RDKIYPLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61085 # 2f02A.160.62 read from T0547.t04.many.frag # found chain 2f02A in template set T0547 160 :LNELEAIID 2f02A 61 :GFHGAFIAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=61086 # 1tf5A.160.441 read from T0547.t04.many.frag # found chain 1tf5A in template set T0547 160 :LNELEAIID 1tf5A 439 :VETSELISK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61087 # 1zzmA.160.74 read from T0547.t04.many.frag # found chain 1zzmA in training set T0547 160 :LNELEAIID 1zzmA 75 :DVSLEQLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61088 # 1qgoA.160.86 read from T0547.t04.many.frag # found chain 1qgoA in template set Warning: unaligning (T0547)L160 (1qgoA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0547 161 :NELEAIID 1qgoA 88 :DEYEKIVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=61089 # 1vchA.160.132 read from T0547.t04.many.frag # found chain 1vchA in template set Warning: unaligning (T0547)L160 (1vchA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 161 :NELEAIID 1vchA 134 :ETMRAMEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=61090 # 1vhuA.160.186 read from T0547.t04.many.frag # found chain 1vhuA in training set T0547 160 :LNELEAIID 1vhuA 185 :RKSAEVALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61091 # 1jubA.160.170 read from T0547.t04.many.frag # found chain 1jubA in training set T0547 160 :LNELEAIID 1jubA 171 :LVHFDIMAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61092 # 1ct5A.161.116 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 161 :NELEAIIDI 1ct5A 118 :KKAKKLNES Number of specific fragments extracted= 1 number of extra gaps= 0 total=61093 # 1h6dA.161.187 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 161 :NELEAIIDI 1h6dA 188 :ADCQRMIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61094 # 1knwA.161.124 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 161 :NELEAIIDI 1knwA 125 :DMLDQLGQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=61095 # 1tf5A.161.442 read from T0547.t04.many.frag # found chain 1tf5A in template set T0547 161 :NELEAIIDI 1tf5A 440 :ETSELISKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61096 # 1wn2A.161.65 read from T0547.t04.many.frag # found chain 1wn2A in training set T0547 161 :NELEAIIDI 1wn2A 66 :EELFKLKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61097 # 1y1pA.161.45 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 161 :NELEAIIDI 1y1pA 47 :SKLANLQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61098 # 1uf3A.161.18 read from T0547.t04.many.frag # found chain 1uf3A in template set T0547 161 :NELEAIIDI 1uf3A 19 :EALEKFVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61099 # 2bbrA.161.109 read from T0547.t04.many.frag # found chain 2bbrA in training set T0547 161 :NELEAIIDI 2bbrA 110 :SELRALRLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=61100 # 1iuqA.161.116 read from T0547.t04.many.frag # found chain 1iuqA in training set T0547 161 :NELEAIIDI 1iuqA 118 :SLFKDIEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61101 # 1em8A.161.46 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 161 :NELEAIIDI 1em8A 47 :KQAYRLDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61102 # 2f02A.161.63 read from T0547.t04.many.frag # found chain 2f02A in template set T0547 161 :NELEAIIDI 2f02A 62 :FHGAFIANE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61103 # 1s2oA.161.18 read from T0547.t04.many.frag # found chain 1s2oA in training set T0547 161 :NELEAIIDI 1s2oA 19 :QALEHLQEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=61104 # 1zzmA.161.75 read from T0547.t04.many.frag # found chain 1zzmA in training set T0547 161 :NELEAIIDI 1zzmA 76 :VSLEQLQQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61105 # 1rttA.161.60 read from T0547.t04.many.frag # found chain 1rttA in training set T0547 161 :NELEAIIDI 1rttA 61 :PAVERFREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61106 # 1orjA.161.16 read from T0547.t04.many.frag # found chain 1orjA in template set T0547 161 :NELEAIIDI 1orjA 1017 :TPLEQIILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61107 # 1e0tA.161.197 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 161 :NELEAIIDI 1e0tA 198 :SDVIEIREH Number of specific fragments extracted= 1 number of extra gaps= 0 total=61108 # 1nytA.161.152 read from T0547.t04.many.frag # found chain 1nytA in training set T0547 161 :NELEAIIDI 1nytA 153 :SRAEELAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61109 # 1zdyA.161.27 read from T0547.t04.many.frag # found chain 1zdyA in training set T0547 161 :NELEAIIDI 1zdyA 28 :DKIYPLLST Number of specific fragments extracted= 1 number of extra gaps= 0 total=61110 # 1f74A.161.23 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 161 :NELEAIIDI 1f74A 24 :KGLRQIIRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=61111 # 7odcA.161.136 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 161 :NELEAIIDI 7odcA 137 :IELMKVARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61112 # 1yiiA.161.118 read from T0547.t04.many.frag # found chain 1yiiA in training set T0547 161 :NELEAIIDI 1yiiA 120 :AEVQNIKQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=61113 # 2b6cA.161.122 read from T0547.t04.many.frag # found chain 2b6cA in template set T0547 161 :NELEAIIDI 2b6cA 120 :TELPTIFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61114 # 1vliA.161.170 read from T0547.t04.many.frag # found chain 1vliA in template set T0547 161 :NELEAIIDI 1vliA 159 :SDVHEAWRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=61115 # 1qgoA.161.87 read from T0547.t04.many.frag # found chain 1qgoA in template set T0547 161 :NELEAIIDI 1qgoA 88 :DEYEKIVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61116 # 1u4qA.161.56 read from T0547.t04.many.frag # found chain 1u4qA in template set T0547 161 :NELEAIIDI 1u4qA 1717 :DRLKDLNSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61117 # 1vchA.161.133 read from T0547.t04.many.frag # found chain 1vchA in template set T0547 161 :NELEAIIDI 1vchA 134 :ETMRAMEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=61118 # 1ttzA.161.11 read from T0547.t04.many.frag # found chain 1ttzA in template set T0547 161 :NELEAIIDI 1ttzA 12 :HLCDQAVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61119 # 1wcwA.161.169 read from T0547.t04.many.frag # found chain 1wcwA in training set T0547 161 :NELEAIIDI 1wcwA 170 :EGILRLEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61120 # 1gxjA.161.66 read from T0547.t04.many.frag # found chain 1gxjA in template set T0547 161 :NELEAIIDI 1gxjA 551 :DTAKAIVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=61121 # 2b4aA.161.25 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 161 :NELEAIIDI 2b4aA 14 :SHATLIQYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=61122 # 1tf5A.162.443 read from T0547.t04.many.frag # found chain 1tf5A in template set T0547 162 :ELEAIIDIA 1tf5A 441 :TSELISKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61123 # 1wn2A.162.66 read from T0547.t04.many.frag # found chain 1wn2A in training set T0547 162 :ELEAIIDIA 1wn2A 67 :ELFKLKAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61124 # 1h6dA.162.188 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 162 :ELEAIIDIA 1h6dA 189 :DCQRMIDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61125 # 1s2oA.162.19 read from T0547.t04.many.frag # found chain 1s2oA in training set T0547 162 :ELEAIIDIA 1s2oA 20 :ALEHLQEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61126 # 2f02A.162.64 read from T0547.t04.many.frag # found chain 2f02A in template set T0547 162 :ELEAIIDIA 2f02A 63 :HGAFIANEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61127 # 1em8A.162.47 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 162 :ELEAIIDIA 1em8A 48 :QAYRLDEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61128 # 1uf3A.162.19 read from T0547.t04.many.frag # found chain 1uf3A in template set T0547 162 :ELEAIIDIA 1uf3A 20 :ALEKFVKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61129 # 1zzmA.162.76 read from T0547.t04.many.frag # found chain 1zzmA in training set T0547 162 :ELEAIIDIA 1zzmA 77 :SLEQLQQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61130 # 1ct5A.162.117 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 162 :ELEAIIDIA 1ct5A 119 :KAKKLNESR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61131 # 1f74A.162.24 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 162 :ELEAIIDIA 1f74A 25 :GLRQIIRHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=61132 # 1y1pA.162.46 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 162 :ELEAIIDIA 1y1pA 48 :KLANLQKRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=61133 # 1orjA.162.17 read from T0547.t04.many.frag # found chain 1orjA in template set T0547 162 :ELEAIIDIA 1orjA 1018 :PLEQIILLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=61134 # 1nytA.162.153 read from T0547.t04.many.frag # found chain 1nytA in training set T0547 162 :ELEAIIDIA 1nytA 154 :RAEELAKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=61135 # 2b4aA.162.26 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 162 :ELEAIIDIA 2b4aA 15 :HATLIQYHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61136 # 1knwA.162.125 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A170 (1knwA)S134 because D (zeta) conformation "forbidden" or filtered. T0547 162 :ELEAIIDI 1knwA 126 :MLDQLGQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=61137 # 2b6cA.162.123 read from T0547.t04.many.frag # found chain 2b6cA in template set T0547 162 :ELEAIIDIA 2b6cA 121 :ELPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=61138 # 1rttA.162.61 read from T0547.t04.many.frag # found chain 1rttA in training set T0547 162 :ELEAIIDIA 1rttA 62 :AVERFREQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=61139 # 1e0tA.162.198 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 162 :ELEAIIDIA 1e0tA 199 :DVIEIREHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61140 # 1zdyA.162.28 read from T0547.t04.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)A170 (1zdyA)F37 because G (3-10) conformation "forbidden" or filtered. T0547 162 :ELEAIIDI 1zdyA 29 :KIYPLLST Number of specific fragments extracted= 1 number of extra gaps= 1 total=61141 # 1u4qA.162.57 read from T0547.t04.many.frag # found chain 1u4qA in template set T0547 162 :ELEAIIDIA 1u4qA 1718 :RLKDLNSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61142 # 1wcwA.162.170 read from T0547.t04.many.frag # found chain 1wcwA in training set T0547 162 :ELEAIIDIA 1wcwA 171 :GILRLEEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61143 # 1qgoA.162.88 read from T0547.t04.many.frag # found chain 1qgoA in template set T0547 162 :ELEAIIDIA 1qgoA 89 :EYEKIVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=61144 # 7odcA.162.137 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A170 (7odcA)H146 because D (zeta) conformation "forbidden" or filtered. T0547 162 :ELEAIIDI 7odcA 138 :ELMKVARA Number of specific fragments extracted= 1 number of extra gaps= 1 total=61145 # 1iuqA.162.117 read from T0547.t04.many.frag # found chain 1iuqA in training set T0547 162 :ELEAIIDIA 1iuqA 119 :LFKDIEEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61146 # 1dqaA.162.192 read from T0547.t04.many.frag # found chain 1dqaA in template set T0547 162 :ELEAIIDIA 1dqaA 614 :GFAVIKEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=61147 # 1jubA.162.172 read from T0547.t04.many.frag # found chain 1jubA in training set T0547 162 :ELEAIIDIA 1jubA 173 :HFDIMAEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61148 # 2bbrA.162.110 read from T0547.t04.many.frag # found chain 2bbrA in training set T0547 162 :ELEAIIDIA 2bbrA 111 :ELRALRLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61149 # 1uhvA.162.80 read from T0547.t04.many.frag # found chain 1uhvA in template set T0547 162 :ELEAIIDIA 1uhvA 81 :YIDRIFDSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=61150 # 1oi0A.162.9 read from T0547.t04.many.frag # found chain 1oi0A in training set T0547 162 :ELEAIIDIA 1oi0A 10 :LLKTILEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61151 # 2b8nA.162.151 read from T0547.t04.many.frag # found chain 2b8nA in template set T0547 162 :ELEAIIDIA 2b8nA 140 :EIQKLTSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61152 # 1h6dA.163.189 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 163 :LEAIIDIAK 1h6dA 190 :CQRMIDAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61153 # 1tf5A.163.444 read from T0547.t04.many.frag # found chain 1tf5A in template set T0547 163 :LEAIIDIAK 1tf5A 442 :SELISKLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61154 # 1uf3A.163.20 read from T0547.t04.many.frag # found chain 1uf3A in template set T0547 163 :LEAIIDIAK 1uf3A 21 :LEKFVKLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=61155 # 1wn2A.163.67 read from T0547.t04.many.frag # found chain 1wn2A in training set T0547 163 :LEAIIDIAK 1wn2A 68 :LFKLKAEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61156 # 1zzmA.163.77 read from T0547.t04.many.frag # found chain 1zzmA in training set T0547 163 :LEAIIDIAK 1zzmA 78 :LEQLQQALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61157 # 1s2oA.163.20 read from T0547.t04.many.frag # found chain 1s2oA in training set T0547 163 :LEAIIDIAK 1s2oA 21 :LEHLQEYLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=61158 # 2f02A.163.65 read from T0547.t04.many.frag # found chain 2f02A in template set T0547 163 :LEAIIDIAK 2f02A 64 :GAFIANELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61159 # 1em8A.163.48 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 163 :LEAIIDIAK 1em8A 49 :AYRLDEALW Number of specific fragments extracted= 1 number of extra gaps= 0 total=61160 # 1e0tA.163.199 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 163 :LEAIIDIAK 1e0tA 200 :VIEIREHLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61161 # 1rttA.163.62 read from T0547.t04.many.frag # found chain 1rttA in training set T0547 163 :LEAIIDIAK 1rttA 63 :VERFREQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61162 # 1ct5A.163.118 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 163 :LEAIIDIAK 1ct5A 120 :AKKLNESRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61163 # 1orjA.163.18 read from T0547.t04.many.frag # found chain 1orjA in template set T0547 163 :LEAIIDIAK 1orjA 1019 :LEQIILLYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=61164 # 1y1pA.163.47 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 163 :LEAIIDIAK 1y1pA 49 :LANLQKRWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=61165 # 1f74A.163.25 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 163 :LEAIIDIAK 1f74A 26 :LRQIIRHNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=61166 # 1ttzA.163.13 read from T0547.t04.many.frag # found chain 1ttzA in template set T0547 163 :LEAIIDIAK 1ttzA 14 :CDQAVEALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61167 # 1u4qA.163.58 read from T0547.t04.many.frag # found chain 1u4qA in template set T0547 163 :LEAIIDIAK 1u4qA 1719 :LKDLNSQAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=61168 # 2b4aA.163.27 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 163 :LEAIIDIAK 2b4aA 16 :ATLIQYHLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=61169 # 1dqaA.163.193 read from T0547.t04.many.frag # found chain 1dqaA in template set T0547 163 :LEAIIDIAK 1dqaA 615 :FAVIKEAFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=61170 # 1gxjA.163.68 read from T0547.t04.many.frag # found chain 1gxjA in template set T0547 163 :LEAIIDIAK 1gxjA 553 :AKAIVEFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61171 # 1duvG.163.197 read from T0547.t04.many.frag # found chain 1duvG in training set T0547 163 :LEAIIDIAK 1duvG 198 :VTECRALAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61172 # 1nt2A.163.93 read from T0547.t04.many.frag # found chain 1nt2A in template set T0547 163 :LEAIIDIAK 1nt2A 94 :FEKLLELVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61173 # 1qgoA.163.89 read from T0547.t04.many.frag # found chain 1qgoA in template set T0547 163 :LEAIIDIAK 1qgoA 90 :YEKIVREVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61174 # 1nytA.163.154 read from T0547.t04.many.frag # found chain 1nytA in training set T0547 163 :LEAIIDIAK 1nytA 155 :AEELAKLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61175 # 1zdyA.163.29 read from T0547.t04.many.frag # found chain 1zdyA in training set T0547 163 :LEAIIDIAK 1zdyA 30 :IYPLLSTFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61176 # 1oi0A.163.10 read from T0547.t04.many.frag # found chain 1oi0A in training set T0547 163 :LEAIIDIAK 1oi0A 11 :LKTILEAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61177 # 1iuqA.163.118 read from T0547.t04.many.frag # found chain 1iuqA in training set T0547 163 :LEAIIDIAK 1iuqA 120 :FKDIEEKLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61178 # 2b6cA.163.124 read from T0547.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0547)K171 (2b6cA)Y130 because P (beta_P) conformation "forbidden" or filtered. T0547 163 :LEAIIDIA 2b6cA 122 :LPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 1 total=61179 # 1vliA.163.172 read from T0547.t04.many.frag # found chain 1vliA in template set T0547 163 :LEAIIDIAK 1vliA 161 :VHEAWRTIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61180 # 1knwA.163.126 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I169 (1knwA)V133 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A170 (1knwA)S134 because D (zeta) conformation "forbidden" or filtered. T0547 163 :LEAIID 1knwA 127 :LDQLGQ T0547 171 :K 1knwA 135 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=61182 # 1jubA.163.173 read from T0547.t04.many.frag # found chain 1jubA in training set T0547 163 :LEAIIDIAK 1jubA 174 :FDIMAEILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=61183 # 1tf5A.164.445 read from T0547.t04.many.frag # found chain 1tf5A in template set T0547 164 :EAIIDIAKE 1tf5A 443 :ELISKLLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=61184 # 1s2oA.164.21 read from T0547.t04.many.frag # found chain 1s2oA in training set T0547 164 :EAIIDIAKE 1s2oA 22 :EHLQEYLGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=61185 # 1h6dA.164.190 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 164 :EAIIDIAKE 1h6dA 191 :QRMIDAAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61186 # 1zzmA.164.78 read from T0547.t04.many.frag # found chain 1zzmA in training set T0547 164 :EAIIDIAKE 1zzmA 79 :EQLQQALER Number of specific fragments extracted= 1 number of extra gaps= 0 total=61187 # 2f02A.164.66 read from T0547.t04.many.frag # found chain 2f02A in template set T0547 164 :EAIIDIAKE 2f02A 65 :AFIANELKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61188 # 1wn2A.164.68 read from T0547.t04.many.frag # found chain 1wn2A in training set T0547 164 :EAIIDIAKE 1wn2A 69 :FKLKAEAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61189 # 1ct5A.164.119 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 164 :EAIIDIAKE 1ct5A 121 :KKLNESRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61190 # 1y1pA.164.48 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 164 :EAIIDIAKE 1y1pA 50 :ANLQKRWDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61191 # 1dqaA.164.194 read from T0547.t04.many.frag # found chain 1dqaA in template set T0547 164 :EAIIDIAKE 1dqaA 616 :AVIKEAFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61192 # 1rttA.164.63 read from T0547.t04.many.frag # found chain 1rttA in training set T0547 164 :EAIIDIAKE 1rttA 64 :ERFREQIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61193 # 1k87A.164.414 read from T0547.t04.many.frag # found chain 1k87A in template set T0547 164 :EAIIDIAKE 1k87A 415 :DYLIDLATR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61194 # 1u4qA.164.59 read from T0547.t04.many.frag # found chain 1u4qA in template set T0547 164 :EAIIDIAKE 1u4qA 1720 :KDLNSQADS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61195 # 1duvG.164.198 read from T0547.t04.many.frag # found chain 1duvG in training set T0547 164 :EAIIDIAKE 1duvG 199 :TECRALAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61196 # 1oi0A.164.11 read from T0547.t04.many.frag # found chain 1oi0A in training set T0547 164 :EAIIDIAKE 1oi0A 12 :KTILEAAKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61197 # 1o4vA.164.29 read from T0547.t04.many.frag # found chain 1o4vA in template set T0547 164 :EAIIDIAKE 1o4vA 18 :KQAAEILEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61198 # 1uf3A.164.21 read from T0547.t04.many.frag # found chain 1uf3A in template set T0547 164 :EAIIDIAKE 1uf3A 22 :EKFVKLAPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=61199 # 1em8A.164.49 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 164 :EAIIDIAKE 1em8A 50 :YRLDEALWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61200 # 1ttzA.164.14 read from T0547.t04.many.frag # found chain 1ttzA in template set T0547 164 :EAIIDIAKE 1ttzA 15 :DQAVEALAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61201 # 1gxjA.164.69 read from T0547.t04.many.frag # found chain 1gxjA in template set T0547 164 :EAIIDIAKE 1gxjA 554 :KAIVEFLKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61202 # 2b4aA.164.28 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 164 :EAIIDIAKE 2b4aA 17 :TLIQYHLNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61203 # 1k0fA.164.225 read from T0547.t04.many.frag # found chain 1k0fA in template set T0547 164 :EAIIDIAKE 1k0fA 257 :EALRDAVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61204 # 1w5qA.164.182 read from T0547.t04.many.frag # found chain 1w5qA in training set T0547 164 :EAIIDIAKE 1w5qA 183 :GAIREALES Number of specific fragments extracted= 1 number of extra gaps= 0 total=61205 # 1yiiA.164.121 read from T0547.t04.many.frag # found chain 1yiiA in training set T0547 164 :EAIIDIAKE 1yiiA 123 :QNIKQVYMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61206 # 1e0tA.164.200 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 164 :EAIIDIAKE 1e0tA 201 :IEIREHLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61207 # 1jubA.164.174 read from T0547.t04.many.frag # found chain 1jubA in training set T0547 164 :EAIIDIAKE 1jubA 175 :DIMAEILNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61208 # 1h6gA.164.25 read from T0547.t04.many.frag # found chain 1h6gA in template set T0547 164 :EAIIDIAKE 1h6gA 402 :LVLIEAAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=61209 # 1vhuA.164.190 read from T0547.t04.many.frag # found chain 1vhuA in training set T0547 164 :EAIIDIAKE 1vhuA 189 :EVALKVFER Number of specific fragments extracted= 1 number of extra gaps= 0 total=61210 # 1l1eA.164.100 read from T0547.t04.many.frag # found chain 1l1eA in template set T0547 164 :EAIIDIAKE 1l1eA 101 :GHVQKMFDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61211 # 1vliA.164.173 read from T0547.t04.many.frag # found chain 1vliA in template set T0547 164 :EAIIDIAKE 1vliA 162 :HEAWRTIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61212 1vjqA expands to /projects/compbio/data/pdb/1vjq.pdb.gz 1vjqA:Skipped atom 292, because occupancy 0.500 <= existing 0.500 in 1vjqA Skipped atom 294, because occupancy 0.500 <= existing 0.500 in 1vjqA Skipped atom 296, because occupancy 0.500 <= existing 0.500 in 1vjqA Skipped atom 298, because occupancy 0.500 <= existing 0.500 in 1vjqA Skipped atom 300, because occupancy 0.500 <= existing 0.500 in 1vjqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vjqA.164.14 read from T0547.t04.many.frag # adding 1vjqA to template set # found chain 1vjqA in template set T0547 164 :EAIIDIAKE 1vjqA 15 :AFLEALAKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61213 # 1h6dA.165.191 read from T0547.t04.many.frag # found chain 1h6dA in template set T0547 165 :AIIDIAKER 1h6dA 192 :RMIDAAKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61214 # 1uf3A.165.22 read from T0547.t04.many.frag # found chain 1uf3A in template set T0547 165 :AIIDIAKER 1uf3A 23 :KFVKLAPDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=61215 # 2f02A.165.67 read from T0547.t04.many.frag # found chain 2f02A in template set T0547 165 :AIIDIAKER 2f02A 66 :FIANELKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61216 # 1s2oA.165.22 read from T0547.t04.many.frag # found chain 1s2oA in training set T0547 165 :AIIDIAKER 1s2oA 23 :HLQEYLGDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61217 # 1y1pA.165.49 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 165 :AIIDIAKER 1y1pA 51 :NLQKRWDAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61218 # 1ct5A.165.120 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 165 :AIIDIAKER 1ct5A 122 :KLNESRAKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=61219 # 1ttzA.165.15 read from T0547.t04.many.frag # found chain 1ttzA in template set T0547 165 :AIIDIAKER 1ttzA 16 :QAVEALAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61220 # 1wn2A.165.69 read from T0547.t04.many.frag # found chain 1wn2A in training set T0547 165 :AIIDIAKER 1wn2A 70 :KLKAEAEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61221 # 1oi0A.165.12 read from T0547.t04.many.frag # found chain 1oi0A in training set T0547 165 :AIIDIAKER 1oi0A 13 :TILEAAKSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61222 # 1e0tA.165.201 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)R173 (1e0tA)H210 because G (3-10) conformation "forbidden" or filtered. T0547 165 :AIIDIAKE 1e0tA 202 :EIREHLKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=61223 # 1gxjA.165.70 read from T0547.t04.many.frag # found chain 1gxjA in template set T0547 165 :AIIDIAKER 1gxjA 555 :AIVEFLKQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=61224 # 1k87A.165.415 read from T0547.t04.many.frag # found chain 1k87A in template set T0547 165 :AIIDIAKER 1k87A 416 :YLIDLATRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61225 # 1zzmA.165.79 read from T0547.t04.many.frag # found chain 1zzmA in training set T0547 165 :AIIDIAKER 1zzmA 80 :QLQQALERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61226 # 1w5qA.165.183 read from T0547.t04.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)R173 (1w5qA)A192 because G (3-10) conformation "forbidden" or filtered. T0547 165 :AIIDIAKE 1w5qA 184 :AIREALES Number of specific fragments extracted= 1 number of extra gaps= 1 total=61227 # 1tf5A.165.446 read from T0547.t04.many.frag # found chain 1tf5A in template set T0547 165 :AIIDIAKER 1tf5A 444 :LISKLLKNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61228 # 1duvG.165.199 read from T0547.t04.many.frag # found chain 1duvG in training set T0547 165 :AIIDIAKER 1duvG 200 :ECRALAQQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=61229 # 1u4qA.165.60 read from T0547.t04.many.frag # found chain 1u4qA in template set T0547 165 :AIIDIAKER 1u4qA 1721 :DLNSQADSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61230 # 1dqaA.165.195 read from T0547.t04.many.frag # found chain 1dqaA in template set T0547 165 :AIIDIAKER 1dqaA 617 :VIKEAFDST Number of specific fragments extracted= 1 number of extra gaps= 0 total=61231 # 1dg9A.165.97 read from T0547.t04.many.frag # found chain 1dg9A in template set T0547 165 :AIIDIAKER 1dg9A 98 :DLNRKSNQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=61232 # 1vhuA.165.191 read from T0547.t04.many.frag # found chain 1vhuA in training set T0547 165 :AIIDIAKER 1vhuA 190 :VALKVFERS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61233 # 1zvdA.165.9 read from T0547.t04.many.frag # found chain 1zvdA in template set T0547 165 :AIIDIAKER 1zvdA 378 :ILRQELSQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61234 # 1qgoA.165.91 read from T0547.t04.many.frag # found chain 1qgoA in template set T0547 165 :AIIDIAKER 1qgoA 92 :KIVREVQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61235 # 1wiwA.165.228 read from T0547.t04.many.frag # found chain 1wiwA in template set T0547 165 :AIIDIAKER 1wiwA 229 :LAKEILESR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61236 # 1em8A.165.50 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 165 :AIIDIAKER 1em8A 51 :RLDEALWAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61237 # 1nnfA.165.14 read from T0547.t04.many.frag # found chain 1nnfA in training set T0547 165 :AIIDIAKER 1nnfA 15 :AVAKAFEQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61238 # 2b4aA.165.29 read from T0547.t04.many.frag # found chain 2b4aA in template set T0547 165 :AIIDIAKER 2b4aA 18 :LIQYHLNQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61239 # 1yiiA.165.122 read from T0547.t04.many.frag # found chain 1yiiA in training set T0547 165 :AIIDIAKER 1yiiA 124 :NIKQVYMQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61240 # 1gjwA.165.4 read from T0547.t04.many.frag # found chain 1gjwA in template set T0547 165 :AIIDIAKER 1gjwA 5 :EINRYCKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61241 # 1dp4A.165.197 read from T0547.t04.many.frag # found chain 1dp4A in template set T0547 165 :AIIDIAKER 1dp4A 198 :KLLRAVRRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61242 # 1x7dA.165.168 read from T0547.t04.many.frag # found chain 1x7dA in training set T0547 165 :AIIDIAKER 1x7dA 169 :KLIANLKEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=61243 # 1oi0A.166.13 read from T0547.t04.many.frag # found chain 1oi0A in training set T0547 166 :IIDIAKERF 1oi0A 14 :ILEAAKSAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=61244 # 1e0tA.166.202 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 166 :IIDIAKERF 1e0tA 203 :IREHLKAHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=61245 # 1k87A.166.416 read from T0547.t04.many.frag # found chain 1k87A in template set Warning: unaligning (T0547)F174 (1k87A)R425 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1k87A 417 :LIDLATRS Number of specific fragments extracted= 1 number of extra gaps= 1 total=61246 # 1uf3A.166.23 read from T0547.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)F174 (1uf3A)G32 because T (delta_L) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1uf3A 24 :FVKLAPDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=61247 # 1ttzA.166.16 read from T0547.t04.many.frag # found chain 1ttzA in template set Warning: unaligning (T0547)F174 (1ttzA)R25 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1ttzA 17 :AVEALAQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=61248 # 1s2oA.166.23 read from T0547.t04.many.frag # found chain 1s2oA in training set Warning: unaligning (T0547)R173 (1s2oA)R31 because G (3-10) conformation "forbidden" or filtered. T0547 166 :IIDIAKE 1s2oA 24 :LQEYLGD T0547 174 :F 1s2oA 32 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=61250 # 1duvG.166.200 read from T0547.t04.many.frag # found chain 1duvG in training set T0547 166 :IIDIAKERF 1duvG 201 :CRALAQQNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=61251 # 1w5qA.166.184 read from T0547.t04.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)F174 (1w5qA)G193 because T (delta_L) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1w5qA 185 :IREALESA Number of specific fragments extracted= 1 number of extra gaps= 1 total=61252 # 1gxjA.166.71 read from T0547.t04.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)F174 (1gxjA)E564 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1gxjA 556 :IVEFLKQN Number of specific fragments extracted= 1 number of extra gaps= 1 total=61253 # 1ct5A.166.121 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 166 :IIDIAKERF 1ct5A 123 :LNESRAKFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61254 # 1h6dA.166.192 read from T0547.t04.many.frag # found chain 1h6dA in template set Warning: unaligning (T0547)R173 (1h6dA)A200 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F174 (1h6dA)N201 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKE 1h6dA 193 :MIDAAKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=61255 # 1gjwA.166.5 read from T0547.t04.many.frag # found chain 1gjwA in template set T0547 166 :IIDIAKERF 1gjwA 6 :INRYCKEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61256 # 1wiwA.166.229 read from T0547.t04.many.frag # found chain 1wiwA in template set T0547 166 :IIDIAKERF 1wiwA 230 :AKEILESRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=61257 # 1y1pA.166.50 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 166 :IIDIAKERF 1y1pA 52 :LQKRWDAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=61258 # 2f02A.166.68 read from T0547.t04.many.frag # found chain 2f02A in template set T0547 166 :IIDIAKERF 2f02A 67 :IANELKKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=61259 # 1dqaA.166.196 read from T0547.t04.many.frag # found chain 1dqaA in template set T0547 166 :IIDIAKERF 1dqaA 618 :IKEAFDSTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61260 # 1dg9A.166.98 read from T0547.t04.many.frag # found chain 1dg9A in template set T0547 166 :IIDIAKERF 1dg9A 99 :LNRKSNQVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61261 # 1km4A.166.108 read from T0547.t04.many.frag # found chain 1km4A in template set Warning: unaligning (T0547)F174 (1km4A)G117 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1km4A 109 :CLNVAEEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=61262 # 1zzmA.166.80 read from T0547.t04.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)R173 (1zzmA)R88 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKE 1zzmA 81 :LQQALER T0547 174 :F 1zzmA 89 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=61264 # 2axpA.166.44 read from T0547.t04.many.frag # found chain 2axpA in template set T0547 166 :IIDIAKERF 2axpA 45 :LFEHFNKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61265 # 1p1mA.166.151 read from T0547.t04.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)R173 (1p1mA)W159 because G (3-10) conformation "forbidden" or filtered. T0547 166 :IIDIAKE 1p1mA 152 :NLKLYNE T0547 174 :F 1p1mA 160 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=61267 # 1u4qA.166.61 read from T0547.t04.many.frag # found chain 1u4qA in template set T0547 166 :IIDIAKERF 1u4qA 1722 :LNSQADSLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=61268 # 1nznA.166.56 read from T0547.t04.many.frag # found chain 1nznA in template set T0547 166 :IIDIAKERF 1nznA 57 :GIVLLEELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61269 # 1wn2A.166.70 read from T0547.t04.many.frag # found chain 1wn2A in training set Warning: unaligning (T0547)F174 (1wn2A)G79 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1wn2A 71 :LKAEAEKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=61270 # 1qddA.166.61 read from T0547.t04.many.frag # found chain 1qddA in training set T0547 166 :IIDIAKERF 1qddA 62 :VASLIKESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=61271 # 1zvdA.166.10 read from T0547.t04.many.frag # found chain 1zvdA in template set T0547 166 :IIDIAKERF 1zvdA 379 :LRQELSQQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61272 # 1tf5A.166.447 read from T0547.t04.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)F174 (1tf5A)G453 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1tf5A 445 :ISKLLKNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=61273 # 1u9yA.166.145 read from T0547.t04.many.frag # found chain 1u9yA in template set T0547 166 :IIDIAKERF 1u9yA 146 :LAEYVKDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61274 # 1nnfA.166.15 read from T0547.t04.many.frag # found chain 1nnfA in training set T0547 166 :IIDIAKERF 1nnfA 16 :VAKAFEQET Number of specific fragments extracted= 1 number of extra gaps= 0 total=61275 # 2b4aA.166.30 read from T0547.t04.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)F174 (2b4aA)G27 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 2b4aA 19 :IQYHLNQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=61276 # 1oi0A.167.14 read from T0547.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)K175 (1oi0A)P23 because C (cis) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1oi0A 15 :LEAAKSAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=61277 # 1e0tA.167.203 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 167 :IDIAKERFK 1e0tA 204 :REHLKAHGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=61278 # 1gjwA.167.6 read from T0547.t04.many.frag # found chain 1gjwA in template set T0547 167 :IDIAKERFK 1gjwA 7 :NRYCKEKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=61279 # 1zvdA.167.11 read from T0547.t04.many.frag # found chain 1zvdA in template set T0547 167 :IDIAKERFK 1zvdA 380 :RQELSQQQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=61280 # 1w5qA.167.185 read from T0547.t04.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)F174 (1w5qA)G193 because T (delta_L) conformation "forbidden" or filtered. T0547 167 :IDIAKER 1w5qA 186 :REALESA T0547 175 :K 1w5qA 194 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=61282 # 1nnfA.167.16 read from T0547.t04.many.frag # found chain 1nnfA in training set T0547 167 :IDIAKERFK 1nnfA 17 :AKAFEQETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=61283 # 2axpA.167.45 read from T0547.t04.many.frag # found chain 2axpA in template set T0547 167 :IDIAKERFK 2axpA 46 :FEHFNKLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=61284 # 1ttzA.167.17 read from T0547.t04.many.frag # found chain 1ttzA in template set Warning: unaligning (T0547)F174 (1ttzA)R25 because L (left) conformation "forbidden" or filtered. T0547 167 :IDIAKER 1ttzA 18 :VEALAQA T0547 175 :K 1ttzA 26 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=61286 # 1ct5A.167.122 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 167 :IDIAKERFK 1ct5A 124 :NESRAKFQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=61287 # 1y1pA.167.51 read from T0547.t04.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)K175 (1y1pA)P61 because P (beta_P) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1y1pA 53 :QKRWDAKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=61288 # 1u9yA.167.146 read from T0547.t04.many.frag # found chain 1u9yA in template set T0547 167 :IDIAKERFK 1u9yA 147 :AEYVKDKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=61289 # 1dqaA.167.197 read from T0547.t04.many.frag # found chain 1dqaA in template set T0547 167 :IDIAKERFK 1dqaA 619 :KEAFDSTSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61290 # 1gxjA.167.72 read from T0547.t04.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)F174 (1gxjA)E564 because L (left) conformation "forbidden" or filtered. T0547 167 :IDIAKER 1gxjA 557 :VEFLKQN T0547 175 :K 1gxjA 565 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=61292 # 1z5zA.167.128 read from T0547.t04.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)F174 (1z5zA)L771 because G (3-10) conformation "forbidden" or filtered. T0547 167 :IDIAKER 1z5zA 764 :RNIIEKE T0547 175 :K 1z5zA 772 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=61294 # 1c4oA.167.69 read from T0547.t04.many.frag # found chain 1c4oA in template set T0547 167 :IDIAKERFK 1c4oA 71 :AAEFRELFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=61295 # 1p1mA.167.152 read from T0547.t04.many.frag # found chain 1p1mA in training set T0547 167 :IDIAKERFK 1p1mA 153 :LKLYNEWNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=61296 # 1hbnA.167.111 read from T0547.t04.many.frag # found chain 1hbnA in training set T0547 167 :IDIAKERFK 1hbnA 113 :HAVIEKRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=61297 # 1o0sA.167.159 read from T0547.t04.many.frag # found chain 1o0sA in template set T0547 167 :IDIAKERFK 1o0sA 160 :YQILSNWHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61298 # 1s2oA.167.24 read from T0547.t04.many.frag # found chain 1s2oA in training set T0547 167 :IDIAKERFK 1s2oA 25 :QEYLGDRRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=61299 # 1dg9A.167.99 read from T0547.t04.many.frag # found chain 1dg9A in template set T0547 167 :IDIAKERFK 1dg9A 100 :NRKSNQVKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=61300 # 1zx0A.167.117 read from T0547.t04.many.frag # found chain 1zx0A in template set T0547 167 :IDIAKERFK 1zx0A 118 :EDVAPTLPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=61301 # 1qddA.167.62 read from T0547.t04.many.frag # found chain 1qddA in training set T0547 167 :IDIAKERFK 1qddA 63 :ASLIKESGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=61302 # 1vlpA.167.319 read from T0547.t04.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)F174 (1vlpA)L315 because G (3-10) conformation "forbidden" or filtered. T0547 167 :IDIAKER 1vlpA 308 :SHHYHDV T0547 175 :K 1vlpA 316 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=61304 # 1zzmA.167.81 read from T0547.t04.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)K175 (1zzmA)A90 because T (delta_L) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1zzmA 82 :QQALERRP Number of specific fragments extracted= 1 number of extra gaps= 1 total=61305 # 1vyiA.167.16 read from T0547.t04.many.frag # found chain 1vyiA in training set T0547 167 :IDIAKERFK 1vyiA 202 :AHQIAESFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61306 # 1nznA.167.57 read from T0547.t04.many.frag # found chain 1nznA in template set T0547 167 :IDIAKERFK 1nznA 58 :IVLLEELLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=61307 # 1whsA.167.162 read from T0547.t04.many.frag # found chain 1whsA in template set T0547 167 :IDIAKERFK 1whsA 156 :SQLVHRSKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=61308 # 1x7dA.167.170 read from T0547.t04.many.frag # found chain 1x7dA in training set T0547 167 :IDIAKERFK 1x7dA 171 :IANLKEYSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=61309 # 1u24A.167.105 read from T0547.t04.many.frag # found chain 1u24A in template set Warning: unaligning (T0547)F174 (1u24A)T113 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1u24A)A114 because G (3-10) conformation "forbidden" or filtered. T0547 167 :IDIAKER 1u24A 106 :AAKLREK Number of specific fragments extracted= 1 number of extra gaps= 1 total=61310 # 1u4qA.167.62 read from T0547.t04.many.frag # found chain 1u4qA in template set T0547 167 :IDIAKERFK 1u4qA 1723 :NSQADSLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=61311 # 1oi0A.168.15 read from T0547.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)K175 (1oi0A)P23 because C (cis) conformation "forbidden" or filtered. T0547 168 :DIAKERF 1oi0A 16 :EAAKSAH T0547 176 :P 1oi0A 24 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=61313 # 1nnfA.168.17 read from T0547.t04.many.frag # found chain 1nnfA in training set T0547 168 :DIAKERFKP 1nnfA 18 :KAFEQETGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=61314 # 1zvdA.168.12 read from T0547.t04.many.frag # found chain 1zvdA in template set T0547 168 :DIAKERFKP 1zvdA 381 :QELSQQQPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61315 # 1whsA.168.163 read from T0547.t04.many.frag # found chain 1whsA in template set T0547 168 :DIAKERFKP 1whsA 157 :QLVHRSKNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=61316 # 1gjwA.168.7 read from T0547.t04.many.frag # found chain 1gjwA in template set Warning: unaligning (T0547)P176 (1gjwA)G16 because T (delta_L) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1gjwA 8 :RYCKEKAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=61317 # 2avuE.168.41 read from T0547.t04.many.frag # found chain 2avuE in template set T0547 168 :DIAKERFKP 2avuE 42 :KLYKELRGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61318 # 1hbnA.168.112 read from T0547.t04.many.frag # found chain 1hbnA in training set Warning: unaligning (T0547)K175 (1hbnA)G121 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1hbnA)K122 because E (beta_S) conformation "forbidden" or filtered. T0547 168 :DIAKERF 1hbnA 114 :AVIEKRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=61319 # 1w5qA.168.186 read from T0547.t04.many.frag # found chain 1w5qA in training set T0547 168 :DIAKERFKP 1w5qA 187 :EALESAGHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=61320 # 1zx0A.168.118 read from T0547.t04.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)P176 (1zx0A)G127 because L (left) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1zx0A 119 :DVAPTLPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=61321 # 1mw5A.168.34 read from T0547.t04.many.frag # found chain 1mw5A in template set T0547 168 :DIAKERFKP 1mw5A 32 :TKLEHSVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61322 # 1sr9A.168.200 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)K175 (1sr9A)G208 because T (delta_L) conformation "forbidden" or filtered. T0547 168 :DIAKERF 1sr9A 201 :EQAAKYP T0547 176 :P 1sr9A 209 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=61324 # 1ct5A.168.123 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)P176 (1ct5A)D133 because G (3-10) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1ct5A 125 :ESRAKFQP Number of specific fragments extracted= 1 number of extra gaps= 1 total=61325 # 1vyiA.168.17 read from T0547.t04.many.frag # found chain 1vyiA in training set Warning: unaligning (T0547)K175 (1vyiA)S210 because G (3-10) conformation "forbidden" or filtered. T0547 168 :DIAKERF 1vyiA 203 :HQIAESF T0547 176 :P 1vyiA 211 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=61327 # 1o0sA.168.160 read from T0547.t04.many.frag # found chain 1o0sA in template set T0547 168 :DIAKERFKP 1o0sA 161 :QILSNWHEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61328 # 1gxjA.168.73 read from T0547.t04.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)P176 (1gxjA)G566 because Y (epsilon') conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1gxjA 558 :EFLKQNEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=61329 # 2axpA.168.46 read from T0547.t04.many.frag # found chain 2axpA in template set T0547 168 :DIAKERFKP 2axpA 47 :EHFNKLADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61330 # 1z5zA.168.129 read from T0547.t04.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)K175 (1z5zA)N772 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z5zA)T773 because E (beta_S) conformation "forbidden" or filtered. T0547 168 :DIAKERF 1z5zA 765 :NIIEKEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=61331 # 1ttzA.168.18 read from T0547.t04.many.frag # found chain 1ttzA in template set Warning: unaligning (T0547)F174 (1ttzA)R25 because L (left) conformation "forbidden" or filtered. T0547 168 :DIAKER 1ttzA 19 :EALAQA T0547 175 :KP 1ttzA 26 :AG Number of specific fragments extracted= 2 number of extra gaps= 1 total=61333 # 1u4qA.168.63 read from T0547.t04.many.frag # found chain 1u4qA in template set Warning: unaligning (T0547)P176 (1u4qA)S1732 because E (beta_S) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1u4qA 1724 :SQADSLMT Number of specific fragments extracted= 1 number of extra gaps= 1 total=61334 # 1e0tA.168.204 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 168 :DIAKERFKP 1e0tA 205 :EHLKAHGGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61335 # 1y1pA.168.52 read from T0547.t04.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)P176 (1y1pA)G62 because L (left) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1y1pA 54 :KRWDAKYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=61336 # 1nkiA.168.19 read from T0547.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)K175 (1nkiA)G27 because T (delta_L) conformation "forbidden" or filtered. T0547 168 :DIAKERF 1nkiA 20 :AFYRDLL T0547 176 :P 1nkiA 28 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=61338 # 1dg9A.168.100 read from T0547.t04.many.frag # found chain 1dg9A in template set T0547 168 :DIAKERFKP 1dg9A 101 :RKSNQVKNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=61339 # 1h70A.168.94 read from T0547.t04.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)P176 (1h70A)G102 because L (left) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1h70A 94 :ETVQRFYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=61340 # 1atg.168.18 read from T0547.t04.many.frag # found chain 1atg in training set Warning: unaligning (T0547)K175 (1atg)G27 because T (delta_L) conformation "forbidden" or filtered. T0547 168 :DIAKERF 1atg 20 :GQFAKQT T0547 176 :P 1atg 28 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=61342 # 1jmkC.168.61 read from T0547.t04.many.frag # found chain 1jmkC in training set Warning: unaligning (T0547)P176 (1jmkC)E71 because E (beta_S) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1jmkC 63 :DLIQKLQP Number of specific fragments extracted= 1 number of extra gaps= 1 total=61343 # 1p1mA.168.153 read from T0547.t04.many.frag # found chain 1p1mA in training set T0547 168 :DIAKERFKP 1p1mA 154 :KLYNEWNGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=61344 # 1c4oA.168.70 read from T0547.t04.many.frag # found chain 1c4oA in template set Warning: unaligning (T0547)F174 (1c4oA)F78 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1c4oA)E80 because G (3-10) conformation "forbidden" or filtered. T0547 168 :DIAKER 1c4oA 72 :AEFREL T0547 175 :K 1c4oA 79 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=61346 # 1qddA.168.63 read from T0547.t04.many.frag # found chain 1qddA in training set Warning: unaligning (T0547)P176 (1qddA)D72 because G (3-10) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1qddA 64 :SLIKESGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=61347 # 1vlpA.168.320 read from T0547.t04.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)K175 (1vlpA)K316 because L (left) conformation "forbidden" or filtered. T0547 168 :DIAKERF 1vlpA 309 :HHYHDVL T0547 176 :P 1vlpA 317 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=61349 # 1nnfA.169.18 read from T0547.t04.many.frag # found chain 1nnfA in training set T0547 169 :IAKERFKPK 1nnfA 19 :AFEQETGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61350 # 1hbnA.169.113 read from T0547.t04.many.frag # found chain 1hbnA in training set Warning: unaligning (T0547)K175 (1hbnA)G121 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1hbnA)K122 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKERF 1hbnA 115 :VIEKRL T0547 177 :K 1hbnA 123 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=61352 # 2avuE.169.42 read from T0547.t04.many.frag # found chain 2avuE in template set T0547 169 :IAKERFKPK 2avuE 43 :LYKELRGSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=61353 # 1nkiA.169.20 read from T0547.t04.many.frag # found chain 1nkiA in training set T0547 169 :IAKERFKPK 1nkiA 21 :FYRDLLGFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61354 # 1gjwA.169.8 read from T0547.t04.many.frag # found chain 1gjwA in template set Warning: unaligning (T0547)K175 (1gjwA)T15 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1gjwA)G16 because T (delta_L) conformation "forbidden" or filtered. T0547 169 :IAKERF 1gjwA 9 :YCKEKA T0547 177 :K 1gjwA 17 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=61356 # 1z5zA.169.130 read from T0547.t04.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)P176 (1z5zA)T773 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1z5zA 766 :IIEKELN T0547 177 :K 1z5zA 774 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=61358 # 1atg.169.19 read from T0547.t04.many.frag # found chain 1atg in training set Warning: unaligning (T0547)K177 (1atg)A29 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKERFKP 1atg 21 :QFAKQTGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=61359 # 1oi0A.169.16 read from T0547.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)K175 (1oi0A)P23 because C (cis) conformation "forbidden" or filtered. T0547 169 :IAKERF 1oi0A 17 :AAKSAH T0547 176 :PK 1oi0A 24 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=61361 # 1whsA.169.164 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)F174 (1whsA)K163 because L (left) conformation "forbidden" or filtered. T0547 169 :IAKER 1whsA 158 :LVHRS T0547 175 :KPK 1whsA 164 :NPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=61363 # 1vyiA.169.18 read from T0547.t04.many.frag # found chain 1vyiA in training set T0547 169 :IAKERFKPK 1vyiA 204 :QIAESFSKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61364 # 1mw5A.169.35 read from T0547.t04.many.frag # found chain 1mw5A in template set T0547 169 :IAKERFKPK 1mw5A 33 :KLEHSVQKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61365 # 1zvdA.169.13 read from T0547.t04.many.frag # found chain 1zvdA in template set T0547 169 :IAKERFKPK 1zvdA 382 :ELSQQQPQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61366 # 2axpA.169.47 read from T0547.t04.many.frag # found chain 2axpA in template set Warning: unaligning (T0547)K177 (2axpA)D56 because Y (epsilon') conformation "forbidden" or filtered. T0547 169 :IAKERFKP 2axpA 48 :HFNKLADE Number of specific fragments extracted= 1 number of extra gaps= 1 total=61367 # 1sr9A.169.201 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)R173 (1sr9A)Y206 because D (zeta) conformation "forbidden" or filtered. T0547 169 :IAKE 1sr9A 202 :QAAK T0547 174 :FKPK 1sr9A 207 :PGTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=61369 # 1h70A.169.95 read from T0547.t04.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)K175 (1h70A)P101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1h70A)G102 because L (left) conformation "forbidden" or filtered. T0547 169 :IAKERF 1h70A 95 :TVQRFY T0547 177 :K 1h70A 103 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=61371 # 1pdo.169.18 read from T0547.t04.many.frag # found chain 1pdo in training set T0547 169 :IAKERFKPK 1pdo 20 :TAEMLLGEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61372 # 1w5qA.169.187 read from T0547.t04.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)R173 (1w5qA)A192 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F174 (1w5qA)G193 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1w5qA)N196 because G (3-10) conformation "forbidden" or filtered. T0547 169 :IAKE 1w5qA 188 :ALES T0547 175 :KP 1w5qA 194 :HT Number of specific fragments extracted= 2 number of extra gaps= 2 total=61374 # 1wyzA.169.183 read from T0547.t04.many.frag # found chain 1wyzA in template set T0547 169 :IAKERFKPK 1wyzA 184 :DILQNCRPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61375 # 1ct5A.169.124 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)P176 (1ct5A)D133 because G (3-10) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1ct5A 126 :SRAKFQP T0547 177 :K 1ct5A 134 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=61377 # 1wuiL.169.134 read from T0547.t04.many.frag # found chain 1wuiL in training set Warning: unaligning (T0547)K175 because of BadResidue code BAD_PEPTIDE in next template residue (1wuiL)R160 Warning: unaligning (T0547)P176 because of BadResidue code BAD_PEPTIDE at template residue (1wuiL)R160 Warning: unaligning (T0547)K177 (1wuiL)K161 because P (beta_P) conformation "forbidden" or filtered. T0547 169 :IAKERF 1wuiL 153 :VASSIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=61378 # 1y1pA.169.53 read from T0547.t04.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)P176 (1y1pA)G62 because L (left) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1y1pA 55 :RWDAKYP T0547 177 :K 1y1pA 63 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=61380 # 1z7aA.169.150 read from T0547.t04.many.frag # found chain 1z7aA in training set Warning: unaligning (T0547)K175 (1z7aA)G157 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z7aA)Q158 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKERF 1z7aA 151 :ILTELT T0547 177 :K 1z7aA 159 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=61382 # 1qhxA.169.21 read from T0547.t04.many.frag # found chain 1qhxA in template set T0547 169 :IAKERFKPK 1qhxA 22 :CLQSVLPEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=61383 # 1h99A.169.26 read from T0547.t04.many.frag # found chain 1h99A in training set Warning: unaligning (T0547)P176 (1h99A)K87 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1h99A 80 :YAKLQLG T0547 177 :K 1h99A 88 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=61385 # 1ttzA.169.19 read from T0547.t04.many.frag # found chain 1ttzA in template set T0547 169 :IAKERFKPK 1ttzA 20 :ALAQARAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61386 # 1c4oA.169.71 read from T0547.t04.many.frag # found chain 1c4oA in template set Warning: unaligning (T0547)P176 (1c4oA)E80 because G (3-10) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1c4oA 73 :EFRELFP T0547 177 :K 1c4oA 81 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=61388 # 1m1nA.169.283 read from T0547.t04.many.frag # found chain 1m1nA in training set T0547 169 :IAKERFKPK 1m1nA 285 :HMEEKYGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=61389 # 1jl1A.169.53 read from T0547.t04.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)P176 (1jl1A)E61 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1jl1A 54 :VALEALK T0547 177 :K 1jl1A 62 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=61391 1twuA expands to /projects/compbio/data/pdb/1twu.pdb.gz 1twuA:# 1twuA.169.27 read from T0547.t04.many.frag # adding 1twuA to template set # found chain 1twuA in template set Warning: unaligning (T0547)K175 (1twuA)C34 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1twuA)K36 because P (beta_P) conformation "forbidden" or filtered. T0547 169 :IAKERF 1twuA 28 :FYEEGL T0547 176 :P 1twuA 35 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=61393 # 1mj5A.169.172 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)K177 (1mj5A)P181 because P (beta_P) conformation "forbidden" or filtered. T0547 169 :IAKERFKP 1mj5A 173 :VLPGLILR Number of specific fragments extracted= 1 number of extra gaps= 1 total=61394 # 2avuE.170.43 read from T0547.t04.many.frag # found chain 2avuE in template set T0547 170 :AKERFKPKP 2avuE 44 :YKELRGSPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=61395 # 1nnfA.170.19 read from T0547.t04.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)P178 (1nnfA)V28 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKPK 1nnfA 20 :FEQETGIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=61396 # 1z5zA.170.131 read from T0547.t04.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)K175 (1z5zA)N772 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z5zA)T773 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1z5zA)E774 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1z5zA)V775 because D (zeta) conformation "forbidden" or filtered. T0547 170 :AKERF 1z5zA 767 :IEKEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=61397 # 1nkiA.170.21 read from T0547.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)K177 (1nkiA)R29 because P (beta_P) conformation "forbidden" or filtered. T0547 170 :AKERFKP 1nkiA 22 :YRDLLGF T0547 178 :P 1nkiA 30 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=61399 # 1atg.170.20 read from T0547.t04.many.frag # found chain 1atg in training set Warning: unaligning (T0547)K175 (1atg)G27 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1atg)V30 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERF 1atg 22 :FAKQT T0547 176 :PK 1atg 28 :HA Number of specific fragments extracted= 2 number of extra gaps= 2 total=61401 # 1hbnA.170.114 read from T0547.t04.many.frag # found chain 1hbnA in training set Warning: unaligning (T0547)K175 (1hbnA)G121 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1hbnA)K122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1hbnA)V124 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERF 1hbnA 116 :IEKRL T0547 177 :K 1hbnA 123 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=61403 # 1h99A.170.27 read from T0547.t04.many.frag # found chain 1h99A in training set Warning: unaligning (T0547)P176 (1h99A)K87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1h99A)K88 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1h99A)L89 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFK 1h99A 81 :AKLQLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=61404 # 1pdo.170.19 read from T0547.t04.many.frag # found chain 1pdo in training set Warning: unaligning (T0547)P178 (1pdo)E29 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKPK 1pdo 21 :AEMLLGEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=61405 # 1whsA.170.165 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)F174 (1whsA)K163 because L (left) conformation "forbidden" or filtered. T0547 170 :AKER 1whsA 159 :VHRS T0547 175 :KPKP 1whsA 164 :NPVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=61407 # 1oi0A.170.17 read from T0547.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)K175 (1oi0A)P23 because C (cis) conformation "forbidden" or filtered. T0547 170 :AKERF 1oi0A 18 :AKSAH T0547 176 :PKP 1oi0A 24 :DEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=61409 # 1i24A.170.70 read from T0547.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)K175 (1i24A)G66 because T (delta_L) conformation "forbidden" or filtered. T0547 170 :AKERF 1i24A 61 :WKALT T0547 176 :PKP 1i24A 67 :KSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=61411 # 1mw5A.170.36 read from T0547.t04.many.frag # found chain 1mw5A in template set T0547 170 :AKERFKPKP 1mw5A 34 :LEHSVQKEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=61412 # 1gjwA.170.9 read from T0547.t04.many.frag # found chain 1gjwA in template set Warning: unaligning (T0547)P176 (1gjwA)G16 because T (delta_L) conformation "forbidden" or filtered. T0547 170 :AKERFK 1gjwA 10 :CKEKAT T0547 177 :KP 1gjwA 17 :KR Number of specific fragments extracted= 2 number of extra gaps= 1 total=61414 # 1z7aA.170.151 read from T0547.t04.many.frag # found chain 1z7aA in training set Warning: unaligning (T0547)P176 (1z7aA)Q158 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFK 1z7aA 152 :LTELTG T0547 177 :KP 1z7aA 159 :RP Number of specific fragments extracted= 2 number of extra gaps= 1 total=61416 # 1h70A.170.96 read from T0547.t04.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)P176 (1h70A)G102 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1h70A)V104 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFK 1h70A 96 :VQRFYP T0547 177 :K 1h70A 103 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=61418 # 1vyiA.170.19 read from T0547.t04.many.frag # found chain 1vyiA in training set Warning: unaligning (T0547)P178 (1vyiA)Y213 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKPK 1vyiA 205 :IAESFSKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=61419 # 1wyzA.170.184 read from T0547.t04.many.frag # found chain 1wyzA in template set T0547 170 :AKERFKPKP 1wyzA 185 :ILQNCRPQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=61420 # 1m1nA.170.284 read from T0547.t04.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)P178 (1m1nA)W294 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKPK 1m1nA 286 :MEEKYGIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=61421 # 1zvdA.170.14 read from T0547.t04.many.frag # found chain 1zvdA in template set Warning: unaligning (T0547)K175 (1zvdA)P388 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1zvdA)A390 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1zvdA)G391 because S (epsilon) conformation "forbidden" or filtered. T0547 170 :AKERF 1zvdA 383 :LSQQQ T0547 176 :P 1zvdA 389 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=61423 # 1qhxA.170.22 read from T0547.t04.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)K177 (1qhxA)P30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1qhxA)W31 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKP 1qhxA 23 :LQSVLPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=61424 # 1sr9A.170.202 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 170 :AKERFKPKP 1sr9A 203 :AAKYPGTQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=61425 # 1su8A.170.385 read from T0547.t04.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)K175 (1su8A)G391 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1su8A)V394 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERF 1su8A 386 :FKRRK T0547 176 :PK 1su8A 392 :KP Number of specific fragments extracted= 2 number of extra gaps= 2 total=61427 # 1y8aA.170.134 read from T0547.t04.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K175 (1y8aA)G118 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1y8aA)R120 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1y8aA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0547 170 :AKERF 1y8aA 113 :TASMI T0547 176 :P 1y8aA 119 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=61429 # 1ttzA.170.20 read from T0547.t04.many.frag # found chain 1ttzA in template set Warning: unaligning (T0547)F174 (1ttzA)R25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1ttzA)A28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1ttzA)F29 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKER 1ttzA 21 :LAQA T0547 175 :KP 1ttzA 26 :AG Number of specific fragments extracted= 2 number of extra gaps= 2 total=61431 # 2axpA.170.48 read from T0547.t04.many.frag # found chain 2axpA in template set Warning: unaligning (T0547)K177 (2axpA)D56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2axpA)N57 because L (left) conformation "forbidden" or filtered. T0547 170 :AKERFKP 2axpA 49 :FNKLADE Number of specific fragments extracted= 1 number of extra gaps= 1 total=61432 # 1o0sA.170.162 read from T0547.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)K175 (1o0sA)E168 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1o0sA)D170 because N (gamma') conformation "forbidden" or filtered. T0547 170 :AKERF 1o0sA 163 :LSNWH T0547 176 :P 1o0sA 169 :E T0547 178 :P 1o0sA 171 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=61435 # 1jmkC.170.63 read from T0547.t04.many.frag # found chain 1jmkC in training set Warning: unaligning (T0547)P176 (1jmkC)E71 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFK 1jmkC 65 :IQKLQP T0547 177 :KP 1jmkC 72 :GP Number of specific fragments extracted= 2 number of extra gaps= 1 total=61437 # 1wo8A.170.41 read from T0547.t04.many.frag # found chain 1wo8A in training set Warning: unaligning (T0547)K177 (1wo8A)A49 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1wo8A)V50 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKP 1wo8A 42 :IQEATGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=61438 # 1bupA.170.130 read from T0547.t04.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)K175 (1bupA)G136 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1bupA)K137 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1bupA)V139 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERF 1bupA 131 :AEAYL T0547 177 :K 1bupA 138 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=61440 # 1tr9A.170.49 read from T0547.t04.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)K177 (1tr9A)P56 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1tr9A)I57 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKP 1tr9A 49 :IRQAAKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=61441 # 1z5zA.171.132 read from T0547.t04.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)P176 (1z5zA)T773 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1z5zA)E774 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1z5zA)V775 because D (zeta) conformation "forbidden" or filtered. T0547 171 :KERFK 1z5zA 768 :EKELN T0547 179 :N 1z5zA 776 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=61443 # 1z7aA.171.152 read from T0547.t04.many.frag # found chain 1z7aA in training set Warning: unaligning (T0547)K175 (1z7aA)G157 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z7aA)Q158 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1z7aA)V161 because G (3-10) conformation "forbidden" or filtered. T0547 171 :KERF 1z7aA 153 :TELT T0547 177 :KP 1z7aA 159 :RP Number of specific fragments extracted= 2 number of extra gaps= 2 total=61445 # 1i24A.171.71 read from T0547.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)K175 (1i24A)G66 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1i24A)S68 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1i24A 62 :KALT T0547 176 :P 1i24A 67 :K T0547 178 :PN 1i24A 69 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=61448 # 1nnfA.171.20 read from T0547.t04.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)K175 (1nnfA)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nnfA)V28 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1nnfA 21 :EQET T0547 176 :PK 1nnfA 26 :IK T0547 179 :N 1nnfA 29 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=61451 # 2avuE.171.44 read from T0547.t04.many.frag # found chain 2avuE in template set Warning: unaligning (T0547)K177 (2avuE)P51 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFKP 2avuE 45 :KELRGS T0547 178 :PN 2avuE 52 :PP Number of specific fragments extracted= 2 number of extra gaps= 1 total=61453 # 1atg.171.21 read from T0547.t04.many.frag # found chain 1atg in training set Warning: unaligning (T0547)K175 (1atg)G27 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1atg)V30 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1atg 23 :AKQT T0547 176 :PK 1atg 28 :HA T0547 179 :N 1atg 31 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=61456 # 1qhxA.171.23 read from T0547.t04.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)K177 (1qhxA)P30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1qhxA)W31 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFKP 1qhxA 24 :QSVLPE T0547 179 :N 1qhxA 32 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=61458 # 1h99A.171.28 read from T0547.t04.many.frag # found chain 1h99A in training set Warning: unaligning (T0547)K175 (1h99A)G86 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1h99A)K87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1h99A)L89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1h99A)N90 because P (beta_P) conformation "forbidden" or filtered. T0547 171 :KERF 1h99A 82 :KLQL T0547 177 :K 1h99A 88 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=61460 # 1wyzA.171.185 read from T0547.t04.many.frag # found chain 1wyzA in template set T0547 171 :KERFKPKPN 1wyzA 186 :LQNCRPQTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=61461 # 1oi0A.171.18 read from T0547.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)K175 (1oi0A)P23 because C (cis) conformation "forbidden" or filtered. T0547 171 :KERF 1oi0A 19 :KSAH T0547 176 :PKPN 1oi0A 24 :DEFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=61463 # 1jl1A.171.55 read from T0547.t04.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)P176 (1jl1A)E61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1jl1A)A63 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFK 1jl1A 56 :LEALK T0547 177 :K 1jl1A 62 :H T0547 179 :N 1jl1A 64 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=61466 # 1h70A.171.97 read from T0547.t04.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)P176 (1h70A)G102 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1h70A)V104 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFK 1h70A 97 :QRFYP T0547 177 :K 1h70A 103 :K T0547 179 :N 1h70A 105 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=61469 # 1nkiA.171.22 read from T0547.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)K175 (1nkiA)G27 because T (delta_L) conformation "forbidden" or filtered. T0547 171 :KERF 1nkiA 23 :RDLL T0547 176 :PKPN 1nkiA 28 :FRLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=61471 # 1pdo.171.20 read from T0547.t04.many.frag # found chain 1pdo in training set Warning: unaligning (T0547)P178 (1pdo)E29 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFKPK 1pdo 22 :EMLLGEQ T0547 179 :N 1pdo 30 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=61473 # 1whsA.171.166 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)K175 (1whsA)N164 because P (beta_P) conformation "forbidden" or filtered. T0547 171 :KERF 1whsA 160 :HRSK T0547 176 :PKPN 1whsA 165 :PVIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=61475 # 1hbnA.171.115 read from T0547.t04.many.frag # found chain 1hbnA in training set Warning: unaligning (T0547)K175 (1hbnA)G121 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1hbnA)K122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1hbnA)V124 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1hbnA 117 :EKRL T0547 177 :K 1hbnA 123 :E T0547 179 :N 1hbnA 125 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=61478 # 1vdkA.171.250 read from T0547.t04.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)K175 (1vdkA)G255 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1vdkA)L256 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1vdkA 251 :AEET T0547 177 :KPN 1vdkA 257 :PFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=61480 # 1y8aA.171.135 read from T0547.t04.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K175 (1y8aA)G118 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1y8aA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0547 171 :KERF 1y8aA 114 :ASMI T0547 176 :PK 1y8aA 119 :VR T0547 179 :N 1y8aA 122 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=61483 # 1o0sA.171.163 read from T0547.t04.many.frag # found chain 1o0sA in template set T0547 171 :KERFKPKPN 1o0sA 164 :SNWHEEDVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61484 # 1tr9A.171.50 read from T0547.t04.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)K175 (1tr9A)K54 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1tr9A)I57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1tr9A)L58 because P (beta_P) conformation "forbidden" or filtered. T0547 171 :KERF 1tr9A 50 :RQAA T0547 176 :PK 1tr9A 55 :RP Number of specific fragments extracted= 2 number of extra gaps= 2 total=61486 # 1su8A.171.386 read from T0547.t04.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)K175 (1su8A)G391 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1su8A)V394 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1su8A 387 :KRRK T0547 176 :PK 1su8A 392 :KP T0547 179 :N 1su8A 395 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=61489 # 1bupA.171.131 read from T0547.t04.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)P176 (1bupA)K137 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1bupA)V139 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFK 1bupA 132 :EAYLG T0547 177 :K 1bupA 138 :T T0547 179 :N 1bupA 140 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=61492 # 1n8kA.171.254 read from T0547.t04.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)F174 (1n8kA)S258 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1n8kA)N259 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1n8kA)G260 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1n8kA)G261 because S (epsilon) conformation "forbidden" or filtered. T0547 171 :KER 1n8kA 255 :TEM T0547 178 :PN 1n8kA 262 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=61494 # 1wo8A.171.42 read from T0547.t04.many.frag # found chain 1wo8A in training set Warning: unaligning (T0547)P178 (1wo8A)V50 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFKPK 1wo8A 43 :QEATGLA T0547 179 :N 1wo8A 51 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=61496 # 1mw5A.171.37 read from T0547.t04.many.frag # found chain 1mw5A in template set Warning: unaligning (T0547)K177 (1mw5A)E41 because P (beta_P) conformation "forbidden" or filtered. T0547 171 :KERFKP 1mw5A 35 :EHSVQK T0547 178 :PN 1mw5A 42 :PT Number of specific fragments extracted= 2 number of extra gaps= 1 total=61498 # 1m1nA.171.285 read from T0547.t04.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)P178 (1m1nA)W294 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFKPK 1m1nA 287 :EEKYGIP T0547 179 :N 1m1nA 295 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=61500 # 1vyiA.171.20 read from T0547.t04.many.frag # found chain 1vyiA in training set Warning: unaligning (T0547)P178 (1vyiA)Y213 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFKPK 1vyiA 206 :AESFSKK T0547 179 :N 1vyiA 214 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=61502 # 1sr9A.171.203 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 171 :KERFKPKPN 1sr9A 204 :AKYPGTQWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61503 # 2axpA.171.49 read from T0547.t04.many.frag # found chain 2axpA in template set Warning: unaligning (T0547)K177 (2axpA)D56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2axpA)N57 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (2axpA)V58 because Y (epsilon') conformation "forbidden" or filtered. T0547 171 :KERFKP 2axpA 50 :NKLADE Number of specific fragments extracted= 1 number of extra gaps= 1 total=61504 # 2aqjA.171.24 read from T0547.t04.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2aqjA)Q31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFK 2aqjA 25 :VRALQ T0547 179 :N 2aqjA 33 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=61506 # 1i24A.172.72 read from T0547.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)K175 (1i24A)G66 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1i24A)S68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1i24A)E70 because P (beta_P) conformation "forbidden" or filtered. T0547 172 :ERF 1i24A 63 :ALT T0547 176 :P 1i24A 67 :K T0547 178 :P 1i24A 69 :I T0547 180 :I 1i24A 71 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=61510 # 1jl1A.172.56 read from T0547.t04.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)P176 (1jl1A)E61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1jl1A)A63 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFK 1jl1A 57 :EALK T0547 177 :K 1jl1A 62 :H T0547 179 :NI 1jl1A 64 :EV Number of specific fragments extracted= 3 number of extra gaps= 2 total=61513 # 1qhxA.172.24 read from T0547.t04.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)K177 (1qhxA)P30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1qhxA)W31 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFKP 1qhxA 25 :SVLPE T0547 179 :NI 1qhxA 32 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=61515 # 1z7aA.172.153 read from T0547.t04.many.frag # found chain 1z7aA in training set Warning: unaligning (T0547)P176 (1z7aA)Q158 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFK 1z7aA 154 :ELTG T0547 177 :KPNI 1z7aA 159 :RPVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=61517 # 1nnfA.172.21 read from T0547.t04.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)K175 (1nnfA)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nnfA)V28 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERF 1nnfA 22 :QET T0547 176 :PK 1nnfA 26 :IK T0547 179 :NI 1nnfA 29 :TL Number of specific fragments extracted= 3 number of extra gaps= 2 total=61520 # 1atg.172.22 read from T0547.t04.many.frag # found chain 1atg in training set Warning: unaligning (T0547)P178 (1atg)V30 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFKPK 1atg 24 :KQTGHA T0547 179 :NI 1atg 31 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=61522 # 1o0sA.172.164 read from T0547.t04.many.frag # found chain 1o0sA in template set T0547 172 :ERFKPKPNI 1o0sA 165 :NWHEEDVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61523 # 1wyzA.172.186 read from T0547.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0547)K175 (1wyzA)R190 because P (beta_P) conformation "forbidden" or filtered. T0547 172 :ERF 1wyzA 187 :QNC T0547 176 :PKPNI 1wyzA 191 :PQTKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=61525 # 1y8aA.172.136 read from T0547.t04.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K175 (1y8aA)G118 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1y8aA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0547 172 :ERF 1y8aA 115 :SMI T0547 176 :PK 1y8aA 119 :VR T0547 179 :NI 1y8aA 122 :EL Number of specific fragments extracted= 3 number of extra gaps= 2 total=61528 # 1z5zA.172.133 read from T0547.t04.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)K175 (1z5zA)N772 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z5zA)T773 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1z5zA)V775 because D (zeta) conformation "forbidden" or filtered. T0547 172 :ERF 1z5zA 769 :KEL T0547 177 :K 1z5zA 774 :E T0547 179 :NI 1z5zA 776 :PF Number of specific fragments extracted= 3 number of extra gaps= 2 total=61531 # 2aqjA.172.25 read from T0547.t04.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFK 2aqjA 26 :RALQ T0547 177 :K 2aqjA 31 :Q T0547 179 :NI 2aqjA 33 :NI Number of specific fragments extracted= 3 number of extra gaps= 2 total=61534 # 1jykA.172.19 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)K175 because first residue in template chain is (1jykA)E3 T0547 176 :PKPNI 1jykA 4 :IRVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61535 # 1vdkA.172.251 read from T0547.t04.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)P176 (1vdkA)L256 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1vdkA)R259 because Y (epsilon') conformation "forbidden" or filtered. T0547 172 :ERFK 1vdkA 252 :EETG T0547 177 :KP 1vdkA 257 :PF T0547 180 :I 1vdkA 260 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=61538 # 1y7tA.172.27 read from T0547.t04.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)K175 (1y7tA)G30 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1y7tA)D32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1y7tA)Q33 because D (zeta) conformation "forbidden" or filtered. T0547 172 :ERF 1y7tA 27 :EML T0547 176 :P 1y7tA 31 :K T0547 179 :NI 1y7tA 34 :PV Number of specific fragments extracted= 3 number of extra gaps= 2 total=61541 # 1tf5A.172.452 read from T0547.t04.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)K175 (1tf5A)G453 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1tf5A)P455 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1tf5A)H456 because Y (epsilon') conformation "forbidden" or filtered. T0547 172 :ERF 1tf5A 450 :KNK T0547 176 :P 1tf5A 454 :I T0547 179 :NI 1tf5A 457 :QV Number of specific fragments extracted= 3 number of extra gaps= 2 total=61544 # 1k0fA.172.232 read from T0547.t04.many.frag # found chain 1k0fA in template set Warning: unaligning (T0547)R173 (1k0fA)A265 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1k0fA)H268 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :E 1k0fA 264 :Q T0547 174 :FK 1k0fA 266 :RG T0547 177 :KPNI 1k0fA 269 :VVQI Number of specific fragments extracted= 3 number of extra gaps= 2 total=61547 # 1tr9A.172.51 read from T0547.t04.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)P178 (1tr9A)I57 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFKPK 1tr9A 51 :QAAKRP T0547 179 :NI 1tr9A 58 :LI Number of specific fragments extracted= 2 number of extra gaps= 1 total=61549 # 1chmA.172.111 read from T0547.t04.many.frag # found chain 1chmA in template set Warning: unaligning (T0547)P176 (1chmA)K117 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)R119 Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)R119 T0547 172 :ERFK 1chmA 113 :QALP T0547 179 :NI 1chmA 120 :RI Number of specific fragments extracted= 2 number of extra gaps= 1 total=61551 # 1whsA.172.167 read from T0547.t04.many.frag # found chain 1whsA in template set T0547 172 :ERFKPKPNI 1whsA 161 :RSKNPVINL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61552 # 1oi0A.172.19 read from T0547.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)K175 (1oi0A)P23 because C (cis) conformation "forbidden" or filtered. T0547 172 :ERF 1oi0A 20 :SAH T0547 176 :PKPNI 1oi0A 24 :DEFIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=61554 # 1srqA.172.112 read from T0547.t04.many.frag # found chain 1srqA in template set Warning: unaligning (T0547)P176 (1srqA)N191 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1srqA)F193 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFK 1srqA 187 :HVIS T0547 177 :K 1srqA 192 :N T0547 179 :NI 1srqA 194 :KF Number of specific fragments extracted= 3 number of extra gaps= 2 total=61557 # 2calA.172.30 read from T0547.t04.many.frag # found chain 2calA in training set Warning: unaligning (T0547)K175 (2calA)G1035 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2calA)V1038 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERF 2calA 1032 :TYS T0547 176 :PK 2calA 1036 :KT T0547 179 :NI 2calA 1039 :HV Number of specific fragments extracted= 3 number of extra gaps= 2 total=61560 # 1n8kA.172.255 read from T0547.t04.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)K175 (1n8kA)N259 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1n8kA)G260 because T (delta_L) conformation "forbidden" or filtered. T0547 172 :ERF 1n8kA 256 :EMS T0547 177 :KPNI 1n8kA 261 :GVDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=61562 # 1gmlA.172.72 read from T0547.t04.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)P176 (1gmlA)L285 because G (3-10) conformation "forbidden" or filtered. T0547 172 :ERFK 1gmlA 281 :DIIQ T0547 177 :KPNI 1gmlA 286 :KPDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=61564 # 1pdo.172.21 read from T0547.t04.many.frag # found chain 1pdo in training set Warning: unaligning (T0547)P178 (1pdo)E29 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFKPK 1pdo 23 :MLLGEQ T0547 179 :NI 1pdo 30 :NV Number of specific fragments extracted= 2 number of extra gaps= 1 total=61566 # 1jmkC.172.65 read from T0547.t04.many.frag # found chain 1jmkC in training set Warning: unaligning (T0547)P176 (1jmkC)E71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1jmkC)G72 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1jmkC)L74 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFK 1jmkC 67 :KLQP T0547 178 :P 1jmkC 73 :P T0547 180 :I 1jmkC 75 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=61569 1yaxA expands to /projects/compbio/data/pdb/1yax.pdb.gz 1yaxA:# 1yaxA.172.32 read from T0547.t04.many.frag # adding 1yaxA to template set # found chain 1yaxA in template set Warning: unaligning (T0547)F174 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1yaxA)D79 Warning: unaligning (T0547)K175 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1yaxA)D79 Warning: unaligning (T0547)P176 (1yaxA)M80 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ER 1yaxA 76 :EN T0547 177 :KPNI 1yaxA 81 :QSPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=61571 # 1fcqA.172.253 read from T0547.t04.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)P176 (1fcqA)S258 because Y (epsilon') conformation "forbidden" or filtered. T0547 172 :ERFK 1fcqA 254 :QMTT T0547 177 :KPNI 1fcqA 259 :RKKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=61573 # 1dg9A.172.104 read from T0547.t04.many.frag # found chain 1dg9A in template set T0547 172 :ERFKPKPNI 1dg9A 105 :QVKNCRAKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=61574 # 1zx0A.172.122 read from T0547.t04.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)P176 (1zx0A)G127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1zx0A)H128 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1zx0A)F129 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFK 1zx0A 123 :TLPD T0547 179 :NI 1zx0A 130 :DG Number of specific fragments extracted= 2 number of extra gaps= 1 total=61576 # 1jl1A.173.57 read from T0547.t04.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)P176 (1jl1A)E61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1jl1A)A63 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1jl1A)I66 because D (zeta) conformation "forbidden" or filtered. T0547 173 :RFK 1jl1A 58 :ALK T0547 177 :K 1jl1A 62 :H T0547 179 :NI 1jl1A 64 :EV Number of specific fragments extracted= 3 number of extra gaps= 3 total=61579 # 2aqjA.173.26 read from T0547.t04.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (2aqjA)T35 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFK 2aqjA 27 :ALQ T0547 177 :K 2aqjA 31 :Q T0547 179 :NI 2aqjA 33 :NI Number of specific fragments extracted= 3 number of extra gaps= 3 total=61582 # 1i24A.173.73 read from T0547.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)K175 (1i24A)G66 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1i24A)Y72 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RF 1i24A 64 :LT T0547 176 :PKPNI 1i24A 67 :KSIEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=61584 # 1jykA.173.20 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)K175 because first residue in template chain is (1jykA)E3 Warning: unaligning (T0547)N179 (1jykA)K7 because Y (epsilon') conformation "forbidden" or filtered. T0547 176 :PKP 1jykA 4 :IRV T0547 180 :IG 1jykA 8 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=61586 # 1tf5A.173.453 read from T0547.t04.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)K175 (1tf5A)G453 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1tf5A)H456 because Y (epsilon') conformation "forbidden" or filtered. T0547 173 :RF 1tf5A 451 :NK T0547 176 :PK 1tf5A 454 :IP T0547 179 :NIG 1tf5A 457 :QVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=61589 # 2calA.173.31 read from T0547.t04.many.frag # found chain 2calA in training set Warning: unaligning (T0547)P178 (2calA)V1038 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFKPK 2calA 1033 :YSGKT T0547 179 :NIG 2calA 1039 :HVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=61591 # 1o0sA.173.165 read from T0547.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)G181 (1o0sA)I174 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFKPKPNI 1o0sA 166 :WHEEDVRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=61592 # 1k0fA.173.233 read from T0547.t04.many.frag # found chain 1k0fA in template set Warning: unaligning (T0547)K175 (1k0fA)G267 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1k0fA)H268 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1k0fA)V269 because N (gamma') conformation "forbidden" or filtered. T0547 173 :RF 1k0fA 265 :AR T0547 178 :PNIG 1k0fA 270 :VQIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=61594 # 1y7tA.173.28 read from T0547.t04.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)K175 (1y7tA)G30 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1y7tA)Q33 because D (zeta) conformation "forbidden" or filtered. T0547 173 :RF 1y7tA 28 :ML T0547 176 :PK 1y7tA 31 :KD T0547 179 :NIG 1y7tA 34 :PVI Number of specific fragments extracted= 3 number of extra gaps= 2 total=61597 # 2fa8A.173.2 read from T0547.t04.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)P176 because first residue in template chain is (2fa8A)T4 Warning: unaligning (T0547)N179 (2fa8A)R7 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KP 2fa8A 5 :KP T0547 180 :IG 2fa8A 8 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=61599 # 1wyzA.173.187 read from T0547.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0547)K175 (1wyzA)R190 because P (beta_P) conformation "forbidden" or filtered. T0547 173 :RF 1wyzA 188 :NC T0547 176 :PKPNIG 1wyzA 191 :PQTKLC Number of specific fragments extracted= 2 number of extra gaps= 1 total=61601 # 1qhxA.173.25 read from T0547.t04.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)P178 (1qhxA)W31 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1qhxA)F34 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFKPK 1qhxA 26 :VLPEP T0547 179 :NI 1qhxA 32 :LA Number of specific fragments extracted= 2 number of extra gaps= 2 total=61603 # 1tr9A.173.52 read from T0547.t04.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)P178 (1tr9A)I57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1tr9A)L58 because P (beta_P) conformation "forbidden" or filtered. T0547 173 :RFKPK 1tr9A 52 :AAKRP T0547 180 :IG 1tr9A 59 :IG Number of specific fragments extracted= 2 number of extra gaps= 1 total=61605 # 1z7aA.173.154 read from T0547.t04.many.frag # found chain 1z7aA in training set Warning: unaligning (T0547)P176 (1z7aA)Q158 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1z7aA)W163 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFK 1z7aA 155 :LTG T0547 177 :KPNI 1z7aA 159 :RPVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=61607 # 1zx0A.173.123 read from T0547.t04.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)P176 (1zx0A)G127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1zx0A)F129 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFK 1zx0A 124 :LPD T0547 177 :K 1zx0A 128 :H T0547 179 :NIG 1zx0A 130 :DGI Number of specific fragments extracted= 3 number of extra gaps= 2 total=61610 # 1sr9A.173.205 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)R173 (1sr9A)Y206 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1sr9A)G208 because T (delta_L) conformation "forbidden" or filtered. T0547 174 :F 1sr9A 207 :P T0547 176 :PKPNIG 1sr9A 209 :TQWRFE Number of specific fragments extracted= 2 number of extra gaps= 2 total=61612 # 2b4aA.173.83 read from T0547.t04.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)P176 (2b4aA)K75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE in next template residue (2b4aA)S78 Warning: unaligning (T0547)N179 because of BadResidue code BAD_PEPTIDE at template residue (2b4aA)S78 T0547 173 :RFK 2b4aA 72 :EQT T0547 177 :K 2b4aA 76 :Q T0547 180 :IG 2b4aA 79 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=61615 # 2aebA.173.219 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P176 (2aebA)K223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. T0547 173 :RFK 2aebA 220 :LGR T0547 177 :K 2aebA 224 :K T0547 179 :NIG 2aebA 226 :PIH Number of specific fragments extracted= 3 number of extra gaps= 2 total=61618 # 1qo0D.173.47 read from T0547.t04.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)R173 (1qo0D)A48 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1qo0D)D50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1qo0D)V51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1qo0D)P52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1qo0D)V53 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :F 1qo0D 49 :F T0547 179 :NIG 1qo0D 54 :DVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=61620 # 1nnfA.173.22 read from T0547.t04.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)P178 (1nnfA)V28 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1nnfA)N31 because D (zeta) conformation "forbidden" or filtered. T0547 173 :RFKPK 1nnfA 23 :ETGIK T0547 179 :NI 1nnfA 29 :TL Number of specific fragments extracted= 2 number of extra gaps= 2 total=61622 # 1chmA.173.112 read from T0547.t04.many.frag # found chain 1chmA in template set Warning: unaligning (T0547)P176 (1chmA)K117 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)R119 Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)R119 T0547 173 :RFK 1chmA 114 :ALP T0547 179 :NIG 1chmA 120 :RIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=61624 # 1gmlA.173.73 read from T0547.t04.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)P176 (1gmlA)L285 because G (3-10) conformation "forbidden" or filtered. T0547 173 :RFK 1gmlA 282 :IIQ T0547 177 :KPNIG 1gmlA 286 :KPDVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=61626 # 2d1pC.173.19 read from T0547.t04.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)N179 (2d1pC)E26 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFKPKP 2d1pC 20 :LLSEGD T0547 180 :IG 2d1pC 27 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=61628 # 1atg.173.23 read from T0547.t04.many.frag # found chain 1atg in training set Warning: unaligning (T0547)K175 (1atg)G27 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1atg)V30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1atg)S33 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RF 1atg 25 :QT T0547 176 :PK 1atg 28 :HA T0547 179 :NI 1atg 31 :VI Number of specific fragments extracted= 3 number of extra gaps= 3 total=61631 # 1r2qA.173.106 read from T0547.t04.many.frag # found chain 1r2qA in training set Warning: unaligning (T0547)K175 (1r2qA)S123 because P (beta_P) conformation "forbidden" or filtered. T0547 173 :RF 1r2qA 121 :QA T0547 176 :PKPNIG 1r2qA 124 :PNIVIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=61633 # 1n8kA.173.256 read from T0547.t04.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)K175 (1n8kA)N259 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1n8kA)G260 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1n8kA)G261 because S (epsilon) conformation "forbidden" or filtered. T0547 173 :RF 1n8kA 257 :MS T0547 178 :PNIG 1n8kA 262 :VDFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=61635 # 1jmkC.173.66 read from T0547.t04.many.frag # found chain 1jmkC in training set Warning: unaligning (T0547)P176 (1jmkC)E71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1jmkC)G72 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1jmkC)L76 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFK 1jmkC 68 :LQP T0547 178 :PNI 1jmkC 73 :PLT Number of specific fragments extracted= 2 number of extra gaps= 2 total=61637 # 1ybdA.173.94 read from T0547.t04.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)K175 (1ybdA)G99 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1ybdA)I100 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1ybdA)K101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1ybdA)A102 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RF 1ybdA 97 :TL T0547 179 :NIG 1ybdA 103 :RVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=61639 # 1mf7A.173.36 read from T0547.t04.many.frag # found chain 1mf7A in training set T0547 173 :RFKPKPNIG 1mf7A 164 :LKKSKTLFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61640 # 1m4tA.173.104 read from T0547.t04.many.frag # found chain 1m4tA in template set Warning: unaligning (T0547)P176 (1m4tA)A108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1m4tA)I110 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFK 1m4tA 105 :TGD T0547 177 :K 1m4tA 109 :S T0547 179 :NIG 1m4tA 111 :IVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=61643 # 1jl1A.174.58 read from T0547.t04.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)P176 (1jl1A)E61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1jl1A)A63 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1jl1A)I66 because D (zeta) conformation "forbidden" or filtered. T0547 174 :FK 1jl1A 59 :LK T0547 177 :K 1jl1A 62 :H T0547 179 :NI 1jl1A 64 :EV T0547 182 :L 1jl1A 67 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=61647 # 2aqjA.174.27 read from T0547.t04.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2aqjA)Q31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FK 2aqjA 28 :LQ T0547 179 :NIGL 2aqjA 33 :NITL Number of specific fragments extracted= 2 number of extra gaps= 1 total=61649 # 1y7tA.174.29 read from T0547.t04.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)F174 (1y7tA)L29 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1y7tA)Q33 because D (zeta) conformation "forbidden" or filtered. T0547 175 :KPK 1y7tA 30 :GKD T0547 179 :NIGL 1y7tA 34 :PVIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=61651 # 2fa8A.174.3 read from T0547.t04.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)P176 because first residue in template chain is (2fa8A)T4 T0547 177 :KPNIGL 2fa8A 5 :KPRIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=61652 # 2d1pC.174.20 read from T0547.t04.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)G181 (2d1pC)L28 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FKPKPNI 2d1pC 21 :LSEGDEL T0547 182 :L 2d1pC 29 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=61654 # 1o7jA.174.0 read from T0547.t04.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)P176 because first residue in template chain is (1o7jA)K3 Warning: unaligning (T0547)K177 (1o7jA)L4 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1o7jA)V8 because P (beta_P) conformation "forbidden" or filtered. T0547 178 :PNI 1o7jA 5 :PNI T0547 182 :L 1o7jA 9 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=61656 # 1jykA.174.21 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)K175 because first residue in template chain is (1jykA)E3 Warning: unaligning (T0547)N179 (1jykA)K7 because Y (epsilon') conformation "forbidden" or filtered. T0547 176 :PKP 1jykA 4 :IRV T0547 180 :IGL 1jykA 8 :AII Number of specific fragments extracted= 2 number of extra gaps= 1 total=61658 # 1wyzA.174.188 read from T0547.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0547)G181 (1wyzA)C196 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FKPKPNI 1wyzA 189 :CRPQTKL T0547 182 :L 1wyzA 197 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=61660 # 2calA.174.32 read from T0547.t04.many.frag # found chain 2calA in training set Warning: unaligning (T0547)K175 (2calA)G1035 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2calA)V1038 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :F 2calA 1034 :S T0547 176 :PK 2calA 1036 :KT T0547 179 :NIGL 2calA 1039 :HVVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=61663 # 1ok7A.174.81 read from T0547.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0547)K177 (1ok7A)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 174 :FKP 1ok7A 82 :LPE T0547 178 :PNIGL 1ok7A 86 :AEIAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=61665 # 1zx0A.174.124 read from T0547.t04.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)K175 (1zx0A)D126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1zx0A)G127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1zx0A)F129 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :F 1zx0A 125 :P T0547 177 :K 1zx0A 128 :H T0547 179 :NIGL 1zx0A 130 :DGIL Number of specific fragments extracted= 3 number of extra gaps= 2 total=61668 # 1wmmA.174.34 read from T0547.t04.many.frag # found chain 1wmmA in template set Warning: unaligning (T0547)N179 (1wmmA)K40 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FKPKP 1wmmA 35 :VKPGD T0547 180 :IGL 1wmmA 41 :LVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=61670 # 1qo0D.174.48 read from T0547.t04.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)P176 (1qo0D)V51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1qo0D)V53 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FK 1qo0D 49 :FD T0547 177 :K 1qo0D 52 :P T0547 179 :NIGL 1qo0D 54 :DVVF Number of specific fragments extracted= 3 number of extra gaps= 2 total=61673 # 1o0sA.174.166 read from T0547.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)K175 (1o0sA)E168 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1o0sA)D170 because N (gamma') conformation "forbidden" or filtered. T0547 174 :F 1o0sA 167 :H T0547 176 :P 1o0sA 169 :E T0547 178 :PNIGL 1o0sA 171 :VRAIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=61676 # 2b4aA.174.84 read from T0547.t04.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)P176 (2b4aA)K75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE in next template residue (2b4aA)S78 Warning: unaligning (T0547)N179 because of BadResidue code BAD_PEPTIDE at template residue (2b4aA)S78 T0547 174 :FK 2b4aA 73 :QT T0547 177 :K 2b4aA 76 :Q T0547 180 :IGL 2b4aA 79 :VLI Number of specific fragments extracted= 3 number of extra gaps= 2 total=61679 # 1k0fA.174.234 read from T0547.t04.many.frag # found chain 1k0fA in template set Warning: unaligning (T0547)P176 (1k0fA)H268 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1k0fA)G273 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)L182 (1k0fA)G274 because Y (epsilon') conformation "forbidden" or filtered. T0547 174 :FK 1k0fA 266 :RG T0547 177 :KPNI 1k0fA 269 :VVQI Number of specific fragments extracted= 2 number of extra gaps= 2 total=61681 # 2aebA.174.220 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P176 (2aebA)K223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (2aebA)H228 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FK 2aebA 221 :GR T0547 177 :K 2aebA 224 :K T0547 179 :NI 2aebA 226 :PI T0547 182 :L 2aebA 229 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=61685 1tljA expands to /projects/compbio/data/pdb/1tlj.pdb.gz 1tljA:# 1tljA.174.88 read from T0547.t04.many.frag # adding 1tljA to template set # found chain 1tljA in template set Warning: unaligning (T0547)P176 (1tljA)Q91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1tljA)R93 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1tljA)W96 because P (beta_P) conformation "forbidden" or filtered. T0547 174 :FK 1tljA 89 :KN T0547 177 :K 1tljA 92 :V T0547 179 :NI 1tljA 94 :RL T0547 182 :L 1tljA 97 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=61689 # 1mf7A.174.37 read from T0547.t04.many.frag # found chain 1mf7A in training set Warning: unaligning (T0547)N179 (1mf7A)L170 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FKPKP 1mf7A 165 :KKSKT T0547 180 :IGL 1mf7A 171 :FSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=61691 # 1vliA.174.182 read from T0547.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)K175 (1vliA)G172 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1vliA)I178 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :F 1vliA 171 :E T0547 176 :PKPNI 1vliA 173 :NNQIA T0547 182 :L 1vliA 179 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=61694 # 2bogX.174.146 read from T0547.t04.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)G181 (2bogX)Y154 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FKPKPNI 2bogX 147 :GSSQARI T0547 182 :L 2bogX 155 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=61696 # 1n8kA.174.257 read from T0547.t04.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)K175 (1n8kA)N259 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1n8kA)G260 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1n8kA)G261 because S (epsilon) conformation "forbidden" or filtered. T0547 174 :F 1n8kA 258 :S T0547 178 :PNIGL 1n8kA 262 :VDFSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=61698 # 1lc5A.174.142 read from T0547.t04.many.frag # found chain 1lc5A in training set T0547 174 :FKPKPNIGL 1lc5A 143 :LTPDLDCLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=61699 # 1bouB.174.46 read from T0547.t04.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)K175 (1bouB)G48 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1bouB)N49 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1bouB)M50 because P (beta_P) conformation "forbidden" or filtered. T0547 174 :F 1bouB 47 :P T0547 178 :PNIGL 1bouB 51 :PDVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=61701 # 1o97D.174.29 read from T0547.t04.many.frag # found chain 1o97D in training set T0547 174 :FKPKPNIGL 1o97D 30 :KSGEDKVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=61702 # 1chmA.174.113 read from T0547.t04.many.frag # found chain 1chmA in template set Warning: unaligning (T0547)P176 (1chmA)K117 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)R119 Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)R119 T0547 174 :FK 1chmA 115 :LP T0547 179 :NIGL 1chmA 120 :RIGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=61704 # 1odzA.174.161 read from T0547.t04.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)K175 (1odzA)G200 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1odzA)L202 because P (beta_P) conformation "forbidden" or filtered. T0547 174 :F 1odzA 199 :Q T0547 176 :P 1odzA 201 :R T0547 178 :PNIGL 1odzA 203 :IPVIF Number of specific fragments extracted= 3 number of extra gaps= 2 total=61707 # 2aeuA.174.137 read from T0547.t04.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)K175 (2aeuA)D139 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aeuA)T142 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :F 2aeuA 138 :I T0547 176 :PK 2aeuA 140 :KD T0547 179 :NIGL 2aeuA 143 :LVII Number of specific fragments extracted= 3 number of extra gaps= 2 total=61710 # 1kmvA.174.126 read from T0547.t04.many.frag # found chain 1kmvA in training set Warning: unaligning (T0547)P176 (1kmvA)G129 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1kmvA)L131 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1kmvA)F134 because N (gamma') conformation "forbidden" or filtered. T0547 174 :FK 1kmvA 127 :HP T0547 177 :K 1kmvA 130 :H T0547 179 :NI 1kmvA 132 :KL T0547 182 :L 1kmvA 135 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=61714 # 1r2qA.174.107 read from T0547.t04.many.frag # found chain 1r2qA in training set T0547 174 :FKPKPNIGL 1r2qA 122 :ASPNIVIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61715 # 2fa8A.175.4 read from T0547.t04.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)P176 because first residue in template chain is (2fa8A)T4 Warning: unaligning (T0547)N179 (2fa8A)R7 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KP 2fa8A 5 :KP T0547 180 :IGLR 2fa8A 8 :IAIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=61717 # 2aebA.175.221 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P176 (2aebA)K223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. T0547 175 :K 2aebA 222 :R T0547 177 :K 2aebA 224 :K T0547 179 :NIGLR 2aebA 226 :PIHLS Number of specific fragments extracted= 3 number of extra gaps= 2 total=61720 # 1qo0D.175.49 read from T0547.t04.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)K175 (1qo0D)D50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1qo0D)V51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1qo0D)V53 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1qo0D)T58 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :K 1qo0D 52 :P T0547 179 :NIGL 1qo0D 54 :DVVF Number of specific fragments extracted= 2 number of extra gaps= 3 total=61722 # 1y7tA.175.30 read from T0547.t04.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)K175 (1y7tA)G30 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1y7tA)Q33 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1y7tA)P34 because P (beta_P) conformation "forbidden" or filtered. T0547 176 :PK 1y7tA 31 :KD T0547 180 :IGLR 1y7tA 35 :VILQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=61724 # 1o7jA.175.1 read from T0547.t04.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)P176 because first residue in template chain is (1o7jA)K3 Warning: unaligning (T0547)K177 (1o7jA)L4 because P (beta_P) conformation "forbidden" or filtered. T0547 178 :PNIGLR 1o7jA 5 :PNIVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61725 # 1jl1A.175.59 read from T0547.t04.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)P176 (1jl1A)E61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1jl1A)A63 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1jl1A)E64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1jl1A)I66 because D (zeta) conformation "forbidden" or filtered. T0547 175 :K 1jl1A 60 :K T0547 177 :K 1jl1A 62 :H T0547 180 :I 1jl1A 65 :V T0547 182 :LR 1jl1A 67 :LS Number of specific fragments extracted= 4 number of extra gaps= 3 total=61729 # 1bouB.175.47 read from T0547.t04.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)K175 (1bouB)G48 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1bouB)N49 because G (3-10) conformation "forbidden" or filtered. T0547 177 :KPNIGLR 1bouB 50 :MPDVVIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=61730 # 2aqjA.175.28 read from T0547.t04.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2aqjA)Q31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :K 2aqjA 29 :Q T0547 179 :NIGLR 2aqjA 33 :NITLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=61732 # 1o97D.175.30 read from T0547.t04.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)N179 (1o97D)K35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1o97D)V37 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :KPKP 1o97D 31 :SGED T0547 180 :I 1o97D 36 :V T0547 182 :LR 1o97D 38 :VA Number of specific fragments extracted= 3 number of extra gaps= 2 total=61735 # 1wmmA.175.35 read from T0547.t04.many.frag # found chain 1wmmA in template set Warning: unaligning (T0547)N179 (1wmmA)K40 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :KPKP 1wmmA 36 :KPGD T0547 180 :IGLR 1wmmA 41 :LVIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=61737 # 1q77A.175.0 read from T0547.t04.many.frag # found chain 1q77A in template set Warning: unaligning (T0547)K175 because first residue in template chain is (1q77A)S-2 Warning: unaligning (T0547)P176 (1q77A)N-1 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1q77A)L4 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1q77A 0 :AMKV T0547 182 :LR 1q77A 5 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=61739 # 1nytA.175.177 read from T0547.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)K177 (1nytA)E180 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nytA)F181 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :KP 1nytA 178 :GH T0547 179 :NIGLR 1nytA 182 :DLIIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=61741 # 1lc5A.175.143 read from T0547.t04.many.frag # found chain 1lc5A in training set T0547 175 :KPKPNIGLR 1lc5A 144 :TPDLDCLFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61742 # 1zdyA.175.42 read from T0547.t04.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)P178 (1zdyA)S46 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :KPK 1zdyA 43 :EGG T0547 179 :NIGLR 1zdyA 47 :VVVFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=61744 # 1vliA.175.183 read from T0547.t04.many.frag # found chain 1vliA in template set T0547 175 :KPKPNIGLR 1vliA 172 :GNNQIAIMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=61745 # 1tljA.175.89 read from T0547.t04.many.frag # found chain 1tljA in template set Warning: unaligning (T0547)P176 (1tljA)Q91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1tljA)R93 because Y (epsilon') conformation "forbidden" or filtered. T0547 175 :K 1tljA 90 :N T0547 177 :K 1tljA 92 :V T0547 179 :NIGLR 1tljA 94 :RLWLI Number of specific fragments extracted= 3 number of extra gaps= 2 total=61748 # 1jykA.175.22 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)K175 because first residue in template chain is (1jykA)E3 Warning: unaligning (T0547)G181 (1jykA)I9 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PKPNI 1jykA 4 :IRVKA T0547 182 :LR 1jykA 10 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=61750 # 1no5A.175.41 read from T0547.t04.many.frag # found chain 1no5A in training set T0547 175 :KPKPNIGLR 1no5A 42 :KKYSDLDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61751 # 1wyzA.175.189 read from T0547.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0547)G181 (1wyzA)C196 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :KPKPNI 1wyzA 190 :RPQTKL T0547 182 :LR 1wyzA 197 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=61753 # 1wnaA.175.25 read from T0547.t04.many.frag # found chain 1wnaA in training set Warning: unaligning (T0547)N179 (1wnaA)K30 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :KPKP 1wnaA 26 :LSEA T0547 180 :IGLR 1wnaA 31 :VYLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=61755 # 2amlA.175.94 read from T0547.t04.many.frag # found chain 2amlA in training set Warning: unaligning (T0547)G181 (2amlA)V89 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :KPKPNI 2amlA 83 :SSHLDL T0547 182 :LR 2amlA 90 :IG Number of specific fragments extracted= 2 number of extra gaps= 1 total=61757 # 2d1pC.175.21 read from T0547.t04.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)G181 (2d1pC)L28 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (2d1pC)L30 because Y (epsilon') conformation "forbidden" or filtered. T0547 175 :KPKPNI 2d1pC 22 :SEGDEL T0547 182 :L 2d1pC 29 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=61759 # 1zx0A.175.125 read from T0547.t04.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)K175 (1zx0A)D126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1zx0A)G127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1zx0A)F129 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :K 1zx0A 128 :H T0547 179 :NIGLR 1zx0A 130 :DGILY Number of specific fragments extracted= 2 number of extra gaps= 2 total=61761 # 1odzA.175.162 read from T0547.t04.many.frag # found chain 1odzA in training set T0547 175 :KPKPNIGLR 1odzA 200 :GRLIPVIFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61762 # 1o0sA.175.167 read from T0547.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)K175 (1o0sA)E168 because P (beta_P) conformation "forbidden" or filtered. T0547 176 :PKPNIGLR 1o0sA 169 :EDVRAIVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=61763 # 1eexB.175.57 read from T0547.t04.many.frag # found chain 1eexB in training set Warning: unaligning (T0547)K175 (1eexB)T58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1eexB)Q59 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1eexB)D61 because G (3-10) conformation "forbidden" or filtered. T0547 177 :K 1eexB 60 :Q T0547 179 :NIGLR 1eexB 62 :EVIIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=61765 # 2aeuA.175.138 read from T0547.t04.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)K175 (2aeuA)D139 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aeuA)T142 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (2aeuA)L143 because P (beta_P) conformation "forbidden" or filtered. T0547 176 :PK 2aeuA 140 :KD T0547 180 :IGLR 2aeuA 144 :VIIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=61767 # 2bogX.175.147 read from T0547.t04.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)G181 (2bogX)Y154 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :KPKPNI 2bogX 148 :SSQARI T0547 182 :LR 2bogX 155 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=61769 # 1xbiA.175.90 read from T0547.t04.many.frag # found chain 1xbiA in training set Warning: unaligning (T0547)P176 (1xbiA)V89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1xbiA)A91 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :K 1xbiA 88 :E T0547 177 :K 1xbiA 90 :A T0547 179 :NIGLR 1xbiA 92 :SSVAI Number of specific fragments extracted= 3 number of extra gaps= 2 total=61772 # 1v6sA.175.8 read from T0547.t04.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)P178 (1v6sA)K12 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1v6sA)L15 because P (beta_P) conformation "forbidden" or filtered. T0547 175 :KPK 1v6sA 9 :PKG T0547 179 :NI 1v6sA 13 :RV T0547 182 :LR 1v6sA 16 :VR Number of specific fragments extracted= 3 number of extra gaps= 2 total=61775 # 1qo0D.176.50 read from T0547.t04.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)P176 (1qo0D)V51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1qo0D)V53 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1qo0D)V56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1qo0D)T58 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :K 1qo0D 52 :P T0547 179 :NI 1qo0D 54 :DV T0547 182 :L 1qo0D 57 :F T0547 184 :V 1qo0D 59 :S Number of specific fragments extracted= 4 number of extra gaps= 4 total=61779 # 2fa8A.176.5 read from T0547.t04.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)P176 because first residue in template chain is (2fa8A)T4 T0547 177 :KPNIGLRV 2fa8A 5 :KPRIAIRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=61780 # 1bouB.176.48 read from T0547.t04.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)P176 (1bouB)N49 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1bouB)V54 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1bouB 50 :MPDV T0547 182 :LRV 1bouB 55 :ILV Number of specific fragments extracted= 2 number of extra gaps= 2 total=61782 # 2aebA.176.222 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P176 (2aebA)K223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :K 2aebA 224 :K T0547 179 :NIGLRV 2aebA 226 :PIHLSF Number of specific fragments extracted= 2 number of extra gaps= 2 total=61784 # 1y7tA.176.31 read from T0547.t04.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)P178 (1y7tA)Q33 because D (zeta) conformation "forbidden" or filtered. T0547 176 :PK 1y7tA 31 :KD T0547 179 :NIGLRV 1y7tA 34 :PVILQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=61786 # 1o7jA.176.2 read from T0547.t04.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)P176 because first residue in template chain is (1o7jA)K3 Warning: unaligning (T0547)G181 (1o7jA)V8 because P (beta_P) conformation "forbidden" or filtered. T0547 177 :KPNI 1o7jA 4 :LPNI T0547 182 :LRV 1o7jA 9 :ILA Number of specific fragments extracted= 2 number of extra gaps= 1 total=61788 # 1odzA.176.163 read from T0547.t04.many.frag # found chain 1odzA in training set T0547 176 :PKPNIGLRV 1odzA 201 :RLIPVIFRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61789 # 1no5A.176.42 read from T0547.t04.many.frag # found chain 1no5A in training set T0547 176 :PKPNIGLRV 1no5A 43 :KYSDLDLAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=61790 # 1nytA.176.178 read from T0547.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)P178 (1nytA)F181 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PK 1nytA 179 :HE T0547 179 :NIGLRV 1nytA 182 :DLIINA Number of specific fragments extracted= 2 number of extra gaps= 1 total=61792 # 1jl1A.176.60 read from T0547.t04.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)P176 (1jl1A)E61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1jl1A)A63 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1jl1A)I66 because D (zeta) conformation "forbidden" or filtered. T0547 177 :K 1jl1A 62 :H T0547 179 :NI 1jl1A 64 :EV T0547 182 :LRV 1jl1A 67 :LST Number of specific fragments extracted= 3 number of extra gaps= 3 total=61795 # 1knwA.176.134 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 176 :PKPNIGLRV 1knwA 135 :PGHRVWLRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=61796 # 1zdyA.176.43 read from T0547.t04.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)P178 (1zdyA)S46 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1zdyA)V49 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PK 1zdyA 44 :GG T0547 179 :NI 1zdyA 47 :VV T0547 182 :LRV 1zdyA 50 :FSM Number of specific fragments extracted= 3 number of extra gaps= 2 total=61799 # 2aqjA.176.29 read from T0547.t04.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2aqjA)Q31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRV 2aqjA 33 :NITLIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=61800 # 2amlA.176.95 read from T0547.t04.many.frag # found chain 2amlA in training set Warning: unaligning (T0547)R183 (2amlA)G91 because P (beta_P) conformation "forbidden" or filtered. T0547 176 :PKPNIGL 2amlA 84 :SHLDLVI T0547 184 :V 2amlA 92 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=61802 # 1lc5A.176.144 read from T0547.t04.many.frag # found chain 1lc5A in training set T0547 176 :PKPNIGLRV 1lc5A 145 :PDLDCLFLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=61803 # 1q77A.176.1 read from T0547.t04.many.frag # found chain 1q77A in template set Warning: unaligning (T0547)P176 (1q77A)N-1 because G (3-10) conformation "forbidden" or filtered. T0547 177 :KPNIGLRV 1q77A 0 :AMKVLLVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=61804 # 1jykA.176.23 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)N179 (1jykA)K7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1jykA)I9 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PKP 1jykA 4 :IRV T0547 180 :I 1jykA 8 :A T0547 182 :LRV 1jykA 10 :ILA Number of specific fragments extracted= 3 number of extra gaps= 2 total=61807 # 1wnaA.176.26 read from T0547.t04.many.frag # found chain 1wnaA in training set T0547 176 :PKPNIGLRV 1wnaA 27 :SEAKVYLIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=61808 # 1wmmA.176.36 read from T0547.t04.many.frag # found chain 1wmmA in template set T0547 176 :PKPNIGLRV 1wmmA 37 :PGDKLVIYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=61809 # 1x3mA.176.14 read from T0547.t04.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)P178 because first residue in template chain is (1x3mA)F4 T0547 179 :NIGLRV 1x3mA 5 :PVVLVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=61810 # 1ezwA.176.1 read from T0547.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)P176 because first residue in template chain is (1ezwA)A2 T0547 177 :KPNIGLRV 1ezwA 3 :EVSFGIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=61811 # 1tljA.176.90 read from T0547.t04.many.frag # found chain 1tljA in template set Warning: unaligning (T0547)P176 (1tljA)Q91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1tljA)R93 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :K 1tljA 92 :V T0547 179 :NIGLRV 1tljA 94 :RLWLIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=61813 # 1wyzA.176.190 read from T0547.t04.many.frag # found chain 1wyzA in template set T0547 176 :PKPNIGLRV 1wyzA 191 :PQTKLCIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61814 # 1o0sA.176.168 read from T0547.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)G181 (1o0sA)I174 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PKPNI 1o0sA 169 :EDVRA T0547 182 :LRV 1o0sA 175 :VVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=61816 # 1cs1A.176.135 read from T0547.t04.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P176 (1cs1A)E136 because G (3-10) conformation "forbidden" or filtered. T0547 177 :KPNIGLRV 1cs1A 137 :KPKLVLVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=61817 # 1ogdA.176.105 read from T0547.t04.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)I180 (1ogdA)A110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1ogdA)V111 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1ogdA)R113 because P (beta_P) conformation "forbidden" or filtered. T0547 176 :PKPN 1ogdA 106 :KDAK T0547 182 :L 1ogdA 112 :I T0547 184 :V 1ogdA 114 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=61820 # 1ccwA.176.52 read from T0547.t04.many.frag # found chain 1ccwA in training set Warning: unaligning (T0547)P176 (1ccwA)T53 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1ccwA)K54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE in next template residue (1ccwA)D56 Warning: unaligning (T0547)N179 because of BadResidue code BAD_PEPTIDE at template residue (1ccwA)D56 T0547 180 :IGLRV 1ccwA 57 :AILVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=61821 # 2b8nA.176.189 read from T0547.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K177 (2b8nA)P179 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (2b8nA)K181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (2b8nA)V183 because D (zeta) conformation "forbidden" or filtered. T0547 176 :P 2b8nA 178 :F T0547 178 :P 2b8nA 180 :A T0547 180 :I 2b8nA 182 :V T0547 182 :LRV 2b8nA 184 :ALV Number of specific fragments extracted= 4 number of extra gaps= 3 total=61825 # 1sfsA.176.50 read from T0547.t04.many.frag # found chain 1sfsA in training set Warning: unaligning (T0547)P176 (1sfsA)G27 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :KPNIGLRV 1sfsA 28 :YPKFWGRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=61826 # 1wn5A.176.24 read from T0547.t04.many.frag # found chain 1wn5A in training set Warning: unaligning (T0547)P178 (1wn5A)Y27 because D (zeta) conformation "forbidden" or filtered. T0547 176 :PK 1wn5A 25 :ED T0547 179 :NIGLRV 1wn5A 28 :SVASAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=61828 # 1knwA.177.135 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K177 (1knwA)G136 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1knwA)R138 because P (beta_P) conformation "forbidden" or filtered. T0547 178 :P 1knwA 137 :H T0547 180 :IGLRVR 1knwA 139 :VWLRVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=61830 # 1odzA.177.164 read from T0547.t04.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)G181 (1odzA)I206 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1odzA)Y210 because L (left) conformation "forbidden" or filtered. T0547 177 :KPNI 1odzA 202 :LIPV T0547 182 :LRV 1odzA 207 :FRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=61832 # 2fa8A.177.6 read from T0547.t04.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)N179 (2fa8A)R7 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KP 2fa8A 5 :KP T0547 180 :IGLRVR 2fa8A 8 :IAIRYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=61834 # 7odcA.177.147 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)R183 (7odcA)R154 because P (beta_P) conformation "forbidden" or filtered. T0547 177 :KPNIGL 7odcA 148 :KAKLVL T0547 184 :VR 7odcA 155 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=61836 # 1qo0D.177.51 read from T0547.t04.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)P178 (1qo0D)V53 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1qo0D)V56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1qo0D)T58 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :K 1qo0D 52 :P T0547 179 :NI 1qo0D 54 :DV T0547 182 :L 1qo0D 57 :F T0547 184 :VR 1qo0D 59 :SI Number of specific fragments extracted= 4 number of extra gaps= 3 total=61840 # 1ogdA.177.106 read from T0547.t04.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)K177 (1ogdA)D107 because G (3-10) conformation "forbidden" or filtered. T0547 178 :PNIGLRVR 1ogdA 108 :AKAVIRTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=61841 # 2aebA.177.223 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (2aebA)H228 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :K 2aebA 224 :K T0547 179 :NI 2aebA 226 :PI T0547 182 :LRVR 2aebA 229 :LSFD Number of specific fragments extracted= 3 number of extra gaps= 2 total=61844 # 2amlA.177.96 read from T0547.t04.many.frag # found chain 2amlA in training set T0547 177 :KPNIGLRVR 2amlA 85 :HLDLVIGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61845 # 1no5A.177.43 read from T0547.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0547)G181 (1no5A)D48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1no5A)I52 because P (beta_P) conformation "forbidden" or filtered. T0547 177 :KPNI 1no5A 44 :YSDL T0547 182 :LRV 1no5A 49 :LAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=61847 # 1zdyA.177.44 read from T0547.t04.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)P178 (1zdyA)S46 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1zdyA)V49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1zdyA)A53 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :K 1zdyA 45 :G T0547 179 :NI 1zdyA 47 :VV T0547 182 :LRV 1zdyA 50 :FSM Number of specific fragments extracted= 3 number of extra gaps= 3 total=61850 # 1wnaA.177.27 read from T0547.t04.many.frag # found chain 1wnaA in training set Warning: unaligning (T0547)G181 (1wnaA)Y32 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1wnaA 28 :EAKV T0547 182 :LRVR 1wnaA 33 :LITD Number of specific fragments extracted= 2 number of extra gaps= 1 total=61852 # 1wmmA.177.37 read from T0547.t04.many.frag # found chain 1wmmA in template set T0547 177 :KPNIGLRVR 1wmmA 38 :GDKLVIYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61853 # 2cuaA.177.66 read from T0547.t04.many.frag # found chain 2cuaA in training set Warning: unaligning (T0547)G181 (2cuaA)V104 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (2cuaA)T108 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :KPNI 2cuaA 100 :GAEI T0547 182 :LRV 2cuaA 105 :FKI Number of specific fragments extracted= 2 number of extra gaps= 2 total=61855 # 2calA.177.35 read from T0547.t04.many.frag # found chain 2calA in training set Warning: unaligning (T0547)P178 (2calA)V1038 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (2calA)V1045 because L (left) conformation "forbidden" or filtered. T0547 177 :K 2calA 1037 :T T0547 179 :NIGLRV 2calA 1039 :HVVAAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=61857 # 1lc5A.177.145 read from T0547.t04.many.frag # found chain 1lc5A in training set T0547 177 :KPNIGLRVR 1lc5A 146 :DLDCLFLCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=61858 # 2b8nA.177.190 read from T0547.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K177 (2b8nA)P179 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (2b8nA)V183 because D (zeta) conformation "forbidden" or filtered. T0547 178 :PNI 2b8nA 180 :AKV T0547 182 :LRVR 2b8nA 184 :ALVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=61860 # 1bouB.177.49 read from T0547.t04.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)G181 (1bouB)V54 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1bouB 50 :MPDV T0547 182 :LRVR 1bouB 55 :ILVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=61862 # 1wn5A.177.25 read from T0547.t04.many.frag # found chain 1wn5A in training set Warning: unaligning (T0547)P178 (1wn5A)Y27 because D (zeta) conformation "forbidden" or filtered. T0547 177 :K 1wn5A 26 :D T0547 179 :NIGLRVR 1wn5A 28 :SVASAAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=61864 # 1nytA.177.179 read from T0547.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)P178 (1nytA)F181 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :K 1nytA 180 :E T0547 179 :NIGLRVR 1nytA 182 :DLIINAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=61866 # 1x3mA.177.15 read from T0547.t04.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)P178 because first residue in template chain is (1x3mA)F4 T0547 179 :NIGLRVR 1x3mA 5 :PVVLVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=61867 # 1r2qA.177.110 read from T0547.t04.many.frag # found chain 1r2qA in training set T0547 177 :KPNIGLRVR 1r2qA 125 :NIVIALSGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=61868 # 1ccwA.177.53 read from T0547.t04.many.frag # found chain 1ccwA in training set Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE in next template residue (1ccwA)D56 Warning: unaligning (T0547)N179 because of BadResidue code BAD_PEPTIDE at template residue (1ccwA)D56 Warning: unaligning (T0547)G181 (1ccwA)I58 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :K 1ccwA 54 :K T0547 180 :I 1ccwA 57 :A T0547 182 :LRVR 1ccwA 59 :LVSS Number of specific fragments extracted= 3 number of extra gaps= 2 total=61871 # 1rttA.177.71 read from T0547.t04.many.frag # found chain 1rttA in training set T0547 177 :KPNIGLRVR 1rttA 72 :AADALLFAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=61872 # 1w8sA.177.137 read from T0547.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)K177 (1w8sA)D138 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1w8sA)L139 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVR 1w8sA 140 :PLVVESF Number of specific fragments extracted= 1 number of extra gaps= 1 total=61873 # 1q77A.177.2 read from T0547.t04.many.frag # found chain 1q77A in template set T0547 177 :KPNIGLRVR 1q77A 0 :AMKVLLVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=61874 # 1cs1A.177.136 read from T0547.t04.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)G181 (1cs1A)V141 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1cs1A 137 :KPKL T0547 182 :LRVR 1cs1A 142 :LVES Number of specific fragments extracted= 2 number of extra gaps= 1 total=61876 # 1k87A.177.424 read from T0547.t04.many.frag # found chain 1k87A in template set Warning: unaligning (T0547)K177 (1k87A)R425 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1k87A)R426 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1k87A)M429 because N (gamma') conformation "forbidden" or filtered. T0547 179 :NI 1k87A 427 :RL T0547 182 :LRVR 1k87A 430 :IRLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=61878 # 1ezwA.177.2 read from T0547.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)K177 (1ezwA)E3 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1ezwA)G7 because E (beta_S) conformation "forbidden" or filtered. T0547 178 :PNI 1ezwA 4 :VSF T0547 182 :LRVR 1ezwA 8 :IELL Number of specific fragments extracted= 2 number of extra gaps= 2 total=61880 # 1vhvA.177.86 read from T0547.t04.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)P178 (1vhvA)K75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1vhvA)V78 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :K 1vhvA 74 :S T0547 179 :NI 1vhvA 76 :SV T0547 182 :LRVR 1vhvA 79 :LLVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=61883 # 2f2hA.177.338 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)G181 (2f2hA)C343 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (2f2hA)N347 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (2f2hA)N347 T0547 177 :KPNI 2f2hA 339 :GLKI T0547 182 :LR 2f2hA 344 :VW Number of specific fragments extracted= 2 number of extra gaps= 2 total=61885 # 1knwA.178.136 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 178 :PNIGLRVRL 1knwA 137 :HRVWLRVNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=61886 # 7odcA.178.148 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61887 # 1ogdA.178.107 read from T0547.t04.many.frag # found chain 1ogdA in template set T0547 178 :PNIGLRVRL 1ogdA 108 :AKAVIRTGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=61888 # 1rttA.178.72 read from T0547.t04.many.frag # found chain 1rttA in training set T0547 178 :PNIGLRVRL 1rttA 73 :ADALLFATP Number of specific fragments extracted= 1 number of extra gaps= 0 total=61889 # 2fa8A.178.7 read from T0547.t04.many.frag # found chain 2fa8A in template set T0547 178 :PNIGLRVRL 2fa8A 6 :PRIAIRYCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=61890 # 1odzA.178.165 read from T0547.t04.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)N179 (1odzA)P204 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1odzA)I206 because N (gamma') conformation "forbidden" or filtered. T0547 178 :P 1odzA 203 :I T0547 180 :I 1odzA 205 :V T0547 182 :LRVRL 1odzA 207 :FRLYH Number of specific fragments extracted= 3 number of extra gaps= 2 total=61893 # 1wnaA.178.28 read from T0547.t04.many.frag # found chain 1wnaA in training set T0547 178 :PNIGLRVRL 1wnaA 29 :AKVYLITDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=61894 # 2aebA.178.224 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (2aebA)P226 because P (beta_P) conformation "forbidden" or filtered. T0547 180 :IGLRVRL 2aebA 227 :IHLSFDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=61895 # 1vhvA.178.87 read from T0547.t04.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)P178 (1vhvA)K75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1vhvA)V78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 (1vhvA)G83 because S (epsilon) conformation "forbidden" or filtered. T0547 179 :NI 1vhvA 76 :SV T0547 182 :LRVR 1vhvA 79 :LLVP Number of specific fragments extracted= 2 number of extra gaps= 3 total=61897 # 1qo0D.178.52 read from T0547.t04.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)P178 (1qo0D)V53 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1qo0D 54 :DVVFTSIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=61898 # 2cuaA.178.67 read from T0547.t04.many.frag # found chain 2cuaA in training set Warning: unaligning (T0547)R185 (2cuaA)T108 because Y (epsilon') conformation "forbidden" or filtered. T0547 178 :PNIGLRV 2cuaA 101 :AEIVFKI T0547 186 :L 2cuaA 109 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=61900 # 1wmmA.178.38 read from T0547.t04.many.frag # found chain 1wmmA in template set T0547 178 :PNIGLRVRL 1wmmA 39 :DKLVIYVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61901 # 2calA.178.36 read from T0547.t04.many.frag # found chain 2calA in training set Warning: unaligning (T0547)P178 (2calA)V1038 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (2calA)V1041 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NI 2calA 1039 :HV T0547 182 :LRVRL 2calA 1042 :AAAVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=61903 # 1wouA.178.24 read from T0547.t04.many.frag # found chain 1wouA in training set Warning: unaligning (T0547)P178 (1wouA)K25 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1wouA)T26 because P (beta_P) conformation "forbidden" or filtered. T0547 180 :IGLRVRL 1wouA 27 :IFAYFTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=61904 # 2f2hA.178.339 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (2f2hA)N347 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (2f2hA)N347 T0547 178 :PNIGLR 2f2hA 340 :LKICVW T0547 186 :L 2f2hA 348 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=61906 # 1w8sA.178.138 read from T0547.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P178 (1w8sA)L139 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1w8sA 140 :PLVVESFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=61907 # 2bw4A.178.78 read from T0547.t04.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE at template residue (2bw4A)D79 Warning: unaligning (T0547)L186 (2bw4A)N87 because D (zeta) conformation "forbidden" or filtered. T0547 179 :NIGLRVR 2bw4A 80 :YVELRLI Number of specific fragments extracted= 1 number of extra gaps= 2 total=61908 # 1hqsA.178.138 read from T0547.t04.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)P178 (1hqsA)D139 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1hqsA)M140 because E (beta_S) conformation "forbidden" or filtered. T0547 180 :IGLRVRL 1hqsA 141 :VIFRENT Number of specific fragments extracted= 1 number of extra gaps= 1 total=61909 # 1vpjA.178.131 read from T0547.t04.many.frag # found chain 1vpjA in template set Warning: unaligning (T0547)P178 (1vpjA)K120 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1vpjA)A121 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :IGLRVRL 1vpjA 122 :AYFAFTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=61910 # 1w0nA.178.56 read from T0547.t04.many.frag # found chain 1w0nA in training set Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE in next template residue (1w0nA)N58 Warning: unaligning (T0547)N179 because of BadResidue code BAD_PEPTIDE at template residue (1w0nA)N58 Warning: unaligning (T0547)G181 (1w0nA)S60 because E (beta_S) conformation "forbidden" or filtered. T0547 180 :I 1w0nA 59 :I T0547 182 :LRVRL 1w0nA 61 :VRGAS Number of specific fragments extracted= 2 number of extra gaps= 2 total=61912 # 1k87A.178.425 read from T0547.t04.many.frag # found chain 1k87A in template set Warning: unaligning (T0547)P178 (1k87A)R426 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1k87A 427 :RLMIRLVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=61913 # 2amlA.178.97 read from T0547.t04.many.frag # found chain 2amlA in training set T0547 178 :PNIGLRVRL 2amlA 86 :LDLVIGISQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61914 # 1zdyA.178.45 read from T0547.t04.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)P178 (1zdyA)S46 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1zdyA)V49 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NI 1zdyA 47 :VV T0547 182 :LRVRL 1zdyA 50 :FSMAS Number of specific fragments extracted= 2 number of extra gaps= 2 total=61916 # 1gqiA.178.232 read from T0547.t04.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)P178 (1gqiA)I237 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1gqiA 238 :KMYLSINF Number of specific fragments extracted= 1 number of extra gaps= 1 total=61917 # 1ezwA.178.3 read from T0547.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)N179 (1ezwA)S5 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1ezwA)L11 because P (beta_P) conformation "forbidden" or filtered. T0547 178 :P 1ezwA 4 :V T0547 180 :IGLRV 1ezwA 6 :FGIEL T0547 186 :L 1ezwA 12 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=61920 # 1zp4A.178.144 read from T0547.t04.many.frag # found chain 1zp4A in template set T0547 178 :PNIGLRVRL 1zp4A 145 :FDISVAAYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=61921 # 1r2qA.178.111 read from T0547.t04.many.frag # found chain 1r2qA in training set Warning: unaligning (T0547)G181 (1r2qA)A129 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 (1r2qA)K134 because L (left) conformation "forbidden" or filtered. T0547 178 :PNI 1r2qA 126 :IVI T0547 182 :LRVR 1r2qA 130 :LSGN Number of specific fragments extracted= 2 number of extra gaps= 2 total=61923 # 2b8nA.178.191 read from T0547.t04.many.frag # found chain 2b8nA in template set T0547 178 :PNIGLRVRL 2b8nA 180 :AKVVALVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61924 # 1v72A.178.140 read from T0547.t04.many.frag # found chain 1v72A in template set Warning: unaligning (T0547)P178 (1v72A)Q141 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1v72A)P142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1v72A)A150 T0547 180 :IGLRVR 1v72A 143 :ACVSIT Number of specific fragments extracted= 1 number of extra gaps= 2 total=61925 # 1nytA.178.180 read from T0547.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)P178 (1nytA)F181 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1nytA 182 :DLIINATS Number of specific fragments extracted= 1 number of extra gaps= 1 total=61926 # 1knwA.179.137 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N179 (1knwA)R138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1knwA)W140 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1knwA)R142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1knwA)G146 because T (delta_L) conformation "forbidden" or filtered. T0547 180 :I 1knwA 139 :V T0547 182 :L 1knwA 141 :L T0547 184 :VRL 1knwA 143 :VNP Number of specific fragments extracted= 3 number of extra gaps= 4 total=61929 # 7odcA.179.149 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 T0547 179 :NIGLRVR 7odcA 150 :KLVLRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=61930 # 1ogdA.179.108 read from T0547.t04.many.frag # found chain 1ogdA in template set T0547 179 :NIGLRVRLH 1ogdA 109 :KAVIRTGEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=61931 # 1odzA.179.166 read from T0547.t04.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)R185 (1odzA)Y210 because L (left) conformation "forbidden" or filtered. T0547 179 :NIGLRV 1odzA 204 :PVIFRL T0547 186 :LH 1odzA 211 :HE Number of specific fragments extracted= 2 number of extra gaps= 1 total=61933 # 1rttA.179.73 read from T0547.t04.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)I180 (1rttA)A75 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :N 1rttA 74 :D T0547 181 :GLRVRLH 1rttA 76 :LLFATPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=61935 # 2fa8A.179.8 read from T0547.t04.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)R183 (2fa8A)R11 because P (beta_P) conformation "forbidden" or filtered. T0547 179 :NIGL 2fa8A 7 :RIAI T0547 184 :VRLH 2fa8A 12 :YCTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=61937 # 1ezwA.179.4 read from T0547.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)N179 (1ezwA)S5 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1ezwA)G7 because E (beta_S) conformation "forbidden" or filtered. T0547 180 :I 1ezwA 6 :F T0547 182 :LRVRLH 1ezwA 8 :IELLPD Number of specific fragments extracted= 2 number of extra gaps= 2 total=61939 # 1wnaA.179.29 read from T0547.t04.many.frag # found chain 1wnaA in training set T0547 179 :NIGLRVRLH 1wnaA 30 :KVYLITDWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=61940 # 1vhvA.179.88 read from T0547.t04.many.frag # found chain 1vhvA in template set T0547 179 :NIGLRVRLH 1vhvA 76 :SVVLLVPGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=61941 # 2aebA.179.225 read from T0547.t04.many.frag # found chain 2aebA in training set T0547 179 :NIGLRVRLH 2aebA 226 :PIHLSFDVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=61942 # 1w8sA.179.139 read from T0547.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)H187 (1w8sA)R148 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1w8sA 140 :PLVVESFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=61943 # 2cuaA.179.68 read from T0547.t04.many.frag # found chain 2cuaA in training set T0547 179 :NIGLRVRLH 2cuaA 102 :EIVFKITSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=61944 # 1qo0D.179.53 read from T0547.t04.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)R183 (1qo0D)T58 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NIGL 1qo0D 54 :DVVF T0547 184 :VRLH 1qo0D 59 :SIFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=61946 # 1gqiA.179.233 read from T0547.t04.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)N179 (1gqiA)K238 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1gqiA)Y240 because E (beta_S) conformation "forbidden" or filtered. T0547 180 :I 1gqiA 239 :M T0547 182 :LRVRLH 1gqiA 241 :LSINFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=61948 # 2f2hA.179.340 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (2f2hA)N347 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (2f2hA)N347 T0547 179 :NIGLR 2f2hA 341 :KICVW T0547 186 :LH 2f2hA 348 :PY Number of specific fragments extracted= 2 number of extra gaps= 1 total=61950 # 1wmmA.179.39 read from T0547.t04.many.frag # found chain 1wmmA in template set Warning: unaligning (T0547)R185 (1wmmA)R46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1wmmA)E48 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NIGLRV 1wmmA 40 :KLVIYV T0547 186 :L 1wmmA 47 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=61952 # 1zdyA.179.46 read from T0547.t04.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)R185 (1zdyA)A53 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NIGLRV 1zdyA 47 :VVVFSM T0547 186 :LH 1zdyA 54 :SG Number of specific fragments extracted= 2 number of extra gaps= 1 total=61954 # 1iuqA.179.130 read from T0547.t04.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)N179 (1iuqA)N132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (1iuqA)N138 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (1iuqA)N138 T0547 180 :IGLR 1iuqA 133 :VVLI T0547 186 :LH 1iuqA 139 :HQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=61956 # 1hqsA.179.139 read from T0547.t04.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)G181 (1hqsA)I142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1hqsA)N146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1hqsA)E148 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NI 1hqsA 140 :MV T0547 182 :LRV 1hqsA 143 :FRE T0547 186 :L 1hqsA 147 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=61959 # 2calA.179.37 read from T0547.t04.many.frag # found chain 2calA in training set Warning: unaligning (T0547)H187 (2calA)P1047 because P (beta_P) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 2calA 1039 :HVVAAAVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=61960 # 2bw4A.179.79 read from T0547.t04.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)L186 (2bw4A)N87 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (2bw4A)P88 because P (beta_P) conformation "forbidden" or filtered. T0547 179 :NIGLRVR 2bw4A 80 :YVELRLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=61961 # 1w0nA.179.57 read from T0547.t04.many.frag # found chain 1w0nA in training set Warning: unaligning (T0547)N179 because of BadResidue code BAD_PEPTIDE at template residue (1w0nA)N58 Warning: unaligning (T0547)R183 (1w0nA)R62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1w0nA)A64 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :IGL 1w0nA 59 :ISV T0547 184 :V 1w0nA 63 :G T0547 186 :LH 1w0nA 65 :SS Number of specific fragments extracted= 3 number of extra gaps= 3 total=61964 # 1wouA.179.25 read from T0547.t04.many.frag # found chain 1wouA in training set T0547 179 :NIGLRVRLH 1wouA 26 :TIFAYFTGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61965 # 1vpjA.179.132 read from T0547.t04.many.frag # found chain 1vpjA in template set Warning: unaligning (T0547)N179 (1vpjA)A121 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :IGLRVRLH 1vpjA 122 :AYFAFTGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=61966 # 1zp4A.179.145 read from T0547.t04.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)H187 (1zp4A)E154 because G (3-10) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1zp4A 146 :DISVAAYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=61967 # 2amlA.179.98 read from T0547.t04.many.frag # found chain 2amlA in training set T0547 179 :NIGLRVRLH 2amlA 87 :DLVIGISQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=61968 # 1nytA.179.181 read from T0547.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)G181 (1nytA)I184 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NI 1nytA 182 :DL T0547 182 :LRVRLH 1nytA 185 :INATSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=61970 # 2b8nA.179.192 read from T0547.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)G181 (2b8nA)V183 because D (zeta) conformation "forbidden" or filtered. T0547 179 :NI 2b8nA 181 :KV T0547 182 :LRVRLH 2b8nA 184 :ALVLSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=61972 # 1vpqA.179.198 read from T0547.t04.many.frag # found chain 1vpqA in template set T0547 179 :NIGLRVRLH 1vpqA 187 :YAYFRFHGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=61973 # 1k87A.179.426 read from T0547.t04.many.frag # found chain 1k87A in template set Warning: unaligning (T0547)N179 (1k87A)R427 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1k87A)G435 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :IGLRVRL 1k87A 428 :LMIRLVK Number of specific fragments extracted= 1 number of extra gaps= 2 total=61974 # 1knwA.180.138 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G181 (1knwA)W140 because E (beta_S) conformation "forbidden" or filtered. T0547 180 :I 1knwA 139 :V T0547 182 :LRVRLHS 1knwA 141 :LRVNPGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=61976 # 7odcA.180.150 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)R185 (7odcA)A156 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 T0547 180 :IGLRV 7odcA 151 :LVLRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=61977 # 1ogdA.180.109 read from T0547.t04.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)G181 (1ogdA)V111 because E (beta_S) conformation "forbidden" or filtered. T0547 180 :I 1ogdA 110 :A T0547 182 :LRVRLHS 1ogdA 112 :IRTGEFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=61979 # 1ezwA.180.5 read from T0547.t04.many.frag # found chain 1ezwA in training set T0547 180 :IGLRVRLHS 1ezwA 6 :FGIELLPDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=61980 # 1rttA.180.74 read from T0547.t04.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)G181 (1rttA)L76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1rttA)F78 because P (beta_P) conformation "forbidden" or filtered. T0547 180 :I 1rttA 75 :A T0547 182 :L 1rttA 77 :L T0547 184 :VRLHS 1rttA 79 :ATPEY Number of specific fragments extracted= 3 number of extra gaps= 2 total=61983 # 2cuaA.180.69 read from T0547.t04.many.frag # found chain 2cuaA in training set Warning: unaligning (T0547)G181 (2cuaA)V104 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (2cuaA)T108 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :I 2cuaA 103 :I T0547 182 :LRV 2cuaA 105 :FKI T0547 186 :LHS 2cuaA 109 :SPD Number of specific fragments extracted= 3 number of extra gaps= 2 total=61986 # 1w8sA.180.140 read from T0547.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)H187 (1w8sA)R148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1w8sA)G149 because S (epsilon) conformation "forbidden" or filtered. T0547 180 :IGLRVRL 1w8sA 141 :LVVESFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=61987 # 2fa8A.180.9 read from T0547.t04.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)R183 (2fa8A)R11 because P (beta_P) conformation "forbidden" or filtered. T0547 180 :IGL 2fa8A 8 :IAI T0547 184 :VRLHS 2fa8A 12 :YCTQC Number of specific fragments extracted= 2 number of extra gaps= 1 total=61989 # 2calA.180.38 read from T0547.t04.many.frag # found chain 2calA in training set Warning: unaligning (T0547)R185 (2calA)V1045 because L (left) conformation "forbidden" or filtered. T0547 180 :IGLRV 2calA 1040 :VVAAA T0547 186 :LHS 2calA 1046 :LPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=61991 # 1zdyA.180.47 read from T0547.t04.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)G181 (1zdyA)V49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1zdyA)A53 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :I 1zdyA 48 :V T0547 182 :LRV 1zdyA 50 :FSM T0547 186 :LHS 1zdyA 54 :SGR Number of specific fragments extracted= 3 number of extra gaps= 2 total=61994 # 2b8nA.180.193 read from T0547.t04.many.frag # found chain 2b8nA in template set T0547 180 :IGLRVRLHS 2b8nA 182 :VVALVLSDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=61995 # 1odzA.180.167 read from T0547.t04.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)R185 (1odzA)Y210 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1odzA)E212 because L (left) conformation "forbidden" or filtered. T0547 180 :IGLRV 1odzA 205 :VIFRL T0547 186 :L 1odzA 211 :H T0547 188 :S 1odzA 213 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=61998 # 1zx1A.180.5 read from T0547.t04.many.frag # found chain 1zx1A in template set Warning: unaligning (T0547)G181 (1zx1A)L6 because E (beta_S) conformation "forbidden" or filtered. T0547 180 :I 1zx1A 5 :V T0547 182 :LRVRLHS 1zx1A 7 :IVYAHQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=62000 # 1w0nA.180.58 read from T0547.t04.many.frag # found chain 1w0nA in training set Warning: unaligning (T0547)G181 (1w0nA)S60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1w0nA)R62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1w0nA)N67 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :I 1w0nA 59 :I T0547 182 :L 1w0nA 61 :V T0547 184 :VRLH 1w0nA 63 :GASS Number of specific fragments extracted= 3 number of extra gaps= 3 total=62003 # 2bw4A.180.80 read from T0547.t04.many.frag # found chain 2bw4A in training set T0547 180 :IGLRVRLHS 2bw4A 81 :VELRLINPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=62004 # 1ga6A.180.98 read from T0547.t04.many.frag # found chain 1ga6A in training set T0547 180 :IGLRVRLHS 1ga6A 99 :LLFYMADQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=62005 # 1wnaA.180.30 read from T0547.t04.many.frag # found chain 1wnaA in training set T0547 180 :IGLRVRLHS 1wnaA 31 :VYLITDWQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=62006 # 1iuqA.180.131 read from T0547.t04.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (1iuqA)N138 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (1iuqA)N138 T0547 180 :IGLR 1iuqA 133 :VVLI T0547 186 :LHS 1iuqA 139 :HQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=62008 # 1vpqA.180.199 read from T0547.t04.many.frag # found chain 1vpqA in template set T0547 180 :IGLRVRLHS 1vpqA 188 :AYFRFHGRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=62009 # 1ikpA.180.366 read from T0547.t04.many.frag # found chain 1ikpA in training set T0547 180 :IGLRVRLHS 1ikpA 367 :VVSLTCPVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=62010 1jfrA expands to /projects/compbio/data/pdb/1jfr.pdb.gz 1jfrA:# 1jfrA.180.82 read from T0547.t04.many.frag # adding 1jfrA to template set # found chain 1jfrA in template set T0547 180 :IGLRVRLHS 1jfrA 83 :VVFTIDTNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=62011 # 1qo0D.180.54 read from T0547.t04.many.frag # found chain 1qo0D in template set Warning: unaligning (T0547)G181 (1qo0D)V56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1qo0D)N63 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :I 1qo0D 55 :V T0547 182 :LRVRLH 1qo0D 57 :FTSIFQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=62013 # 1vhvA.180.89 read from T0547.t04.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)G181 (1vhvA)V78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 (1vhvA)G83 because S (epsilon) conformation "forbidden" or filtered. T0547 180 :I 1vhvA 77 :V T0547 182 :LRVR 1vhvA 79 :LLVP T0547 187 :HS 1vhvA 84 :DP Number of specific fragments extracted= 3 number of extra gaps= 2 total=62016 # 1nytA.180.182 read from T0547.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)G181 (1nytA)I184 because E (beta_S) conformation "forbidden" or filtered. T0547 180 :I 1nytA 183 :L T0547 182 :LRVRLHS 1nytA 185 :INATSSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=62018 # 2amlA.180.99 read from T0547.t04.many.frag # found chain 2amlA in training set T0547 180 :IGLRVRLHS 2amlA 88 :LVIGISQSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62019 # 1sfsA.180.54 read from T0547.t04.many.frag # found chain 1sfsA in training set Warning: unaligning (T0547)L186 (1sfsA)S37 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :IGLRVR 1sfsA 31 :FWGRYL T0547 187 :HS 1sfsA 38 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=62021 # 1x3mA.180.18 read from T0547.t04.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)G181 (1x3mA)V7 because E (beta_S) conformation "forbidden" or filtered. T0547 180 :I 1x3mA 6 :V T0547 182 :LRVRLHS 1x3mA 8 :LVINCGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=62023 # 1vyrA.180.229 read from T0547.t04.many.frag # found chain 1vyrA in training set Warning: unaligning (T0547)S188 (1vyrA)G238 because S (epsilon) conformation "forbidden" or filtered. T0547 180 :IGLRVRLH 1vyrA 230 :IGIRVSPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=62024 # 1k87A.180.427 read from T0547.t04.many.frag # found chain 1k87A in template set Warning: unaligning (T0547)G181 (1k87A)M429 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1k87A)G435 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :I 1k87A 428 :L T0547 182 :LRVRL 1k87A 430 :IRLVK T0547 188 :S 1k87A 436 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=62027 # 1hqsA.180.140 read from T0547.t04.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)G181 (1hqsA)I142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1hqsA)E148 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :I 1hqsA 141 :V T0547 182 :LRVRL 1hqsA 143 :FRENT T0547 188 :S 1hqsA 149 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=62030 # 1knwA.181.139 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G181 (1knwA)W140 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1knwA)G148 because Y (epsilon') conformation "forbidden" or filtered. T0547 182 :LRVRLHS 1knwA 141 :LRVNPGF Number of specific fragments extracted= 1 number of extra gaps= 2 total=62031 # 1ezwA.181.6 read from T0547.t04.many.frag # found chain 1ezwA in training set T0547 181 :GLRVRLHSA 1ezwA 7 :GIELLPDDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=62032 # 2bw4A.181.81 read from T0547.t04.many.frag # found chain 2bw4A in training set T0547 181 :GLRVRLHSA 2bw4A 82 :ELRLINPDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=62033 # 2cuaA.181.70 read from T0547.t04.many.frag # found chain 2cuaA in training set T0547 181 :GLRVRLHSA 2cuaA 104 :VFKITSPDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=62034 # 1w0nA.181.59 read from T0547.t04.many.frag # found chain 1w0nA in training set Warning: unaligning (T0547)G181 (1w0nA)S60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1w0nA)A64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1w0nA)N67 because Y (epsilon') conformation "forbidden" or filtered. T0547 182 :LRV 1w0nA 61 :VRG T0547 186 :LH 1w0nA 65 :SS T0547 189 :A 1w0nA 68 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=62037 # 1hqz1.181.31 read from T0547.t04.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)G181 (1hqz1)W32 because Y (epsilon') conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1hqz1 33 :LIISPNAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=62038 # 1zdyA.181.48 read from T0547.t04.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)G181 (1zdyA)V49 because E (beta_S) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1zdyA 50 :FSMASGRH Number of specific fragments extracted= 1 number of extra gaps= 1 total=62039 # 1jfrA.181.83 read from T0547.t04.many.frag # found chain 1jfrA in template set T0547 181 :GLRVRLHSA 1jfrA 84 :VFTIDTNTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=62040 # 1wn5A.181.29 read from T0547.t04.many.frag # found chain 1wn5A in training set T0547 181 :GLRVRLHSA 1wn5A 30 :ASAALSSDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62041 # 2b8nA.181.194 read from T0547.t04.many.frag # found chain 2b8nA in template set T0547 181 :GLRVRLHSA 2b8nA 183 :VALVLSDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=62042 # 1zx1A.181.6 read from T0547.t04.many.frag # found chain 1zx1A in template set Warning: unaligning (T0547)R185 (1zx1A)A10 because D (zeta) conformation "forbidden" or filtered. T0547 181 :GLRV 1zx1A 6 :LIVY T0547 186 :LHSA 1zx1A 11 :HQEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=62044 # 2bh1A.181.5 read from T0547.t04.many.frag # found chain 2bh1A in template set T0547 181 :GLRVRLHSA 2bh1A 6 :TVRLSSQKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=62045 # 2fkcA.181.63 read from T0547.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0547)G181 (2fkcA)N64 because D (zeta) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 2fkcA 65 :VQVLVFYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=62046 # 1x3mA.181.19 read from T0547.t04.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)R185 (1x3mA)N11 because D (zeta) conformation "forbidden" or filtered. T0547 181 :GLRV 1x3mA 7 :VLVI T0547 186 :LHSA 1x3mA 12 :CGSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=62048 # 1ikpA.181.367 read from T0547.t04.many.frag # found chain 1ikpA in training set Warning: unaligning (T0547)A189 (1ikpA)A376 because P (beta_P) conformation "forbidden" or filtered. T0547 181 :GLRVRLHS 1ikpA 368 :VSLTCPVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=62049 # 2fa8A.181.10 read from T0547.t04.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)G181 (2fa8A)A9 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (2fa8A)R11 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :L 2fa8A 10 :I T0547 184 :VRLHSA 2fa8A 12 :YCTQCN Number of specific fragments extracted= 2 number of extra gaps= 2 total=62051 # 1uekA.181.153 read from T0547.t04.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)G181 (1uekA)A154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1uekA)L161 because D (zeta) conformation "forbidden" or filtered. T0547 182 :LRVRLH 1uekA 155 :VVFFPG T0547 189 :A 1uekA 162 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=62053 # 1iv3A.181.94 read from T0547.t04.many.frag # found chain 1iv3A in training set Warning: unaligning (T0547)A189 (1iv3A)P103 because C (cis) conformation "forbidden" or filtered. T0547 181 :GLRVRLHS 1iv3A 95 :SLVLTLDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=62054 # 1no5A.181.47 read from T0547.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0547)G181 (1no5A)D48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0547)S188 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 T0547 182 :LRVR 1no5A 49 :LAII T0547 189 :A 1no5A 56 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=62056 # 2calA.181.39 read from T0547.t04.many.frag # found chain 2calA in training set Warning: unaligning (T0547)G181 (2calA)V1041 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (2calA)V1045 because L (left) conformation "forbidden" or filtered. T0547 182 :LRV 2calA 1042 :AAA T0547 186 :LHSA 2calA 1046 :LPGF Number of specific fragments extracted= 2 number of extra gaps= 2 total=62058 # 1uwfA.181.105 read from T0547.t04.many.frag # found chain 1uwfA in training set T0547 181 :GLRVRLHSA 1uwfA 106 :ALYLTPVSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=62059 # 1q2lA.181.254 read from T0547.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)R183 (1q2lA)H280 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1q2lA)P286 because P (beta_P) conformation "forbidden" or filtered. T0547 181 :GL 1q2lA 278 :II T0547 184 :VRLHS 1q2lA 281 :YVPAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=62061 # 1wnaA.181.31 read from T0547.t04.many.frag # found chain 1wnaA in training set Warning: unaligning (T0547)G181 (1wnaA)Y32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1wnaA)K40 because E (beta_S) conformation "forbidden" or filtered. T0547 182 :LRVRLHS 1wnaA 33 :LITDWQD Number of specific fragments extracted= 1 number of extra gaps= 2 total=62062 # 1f9vA.181.7 read from T0547.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0547)S188 (1f9vA)L397 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1f9vA)K398 because P (beta_P) conformation "forbidden" or filtered. T0547 181 :GLRVRLH 1f9vA 390 :YCRIRPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=62063 # 1ga6A.181.99 read from T0547.t04.many.frag # found chain 1ga6A in training set T0547 181 :GLRVRLHSA 1ga6A 100 :LFYMADQSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=62064 # 1h1nA.181.195 read from T0547.t04.many.frag # found chain 1h1nA in training set Warning: unaligning (T0547)G181 (1h1nA)E196 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1h1nA 197 :MHQYLDSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=62065 # 2pth.181.130 read from T0547.t04.many.frag # found chain 2pth in training set Warning: unaligning (T0547)G181 (2pth)R131 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (2pth)G135 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRV 2pth 132 :LRI T0547 186 :LHSA 2pth 136 :IGHP Number of specific fragments extracted= 2 number of extra gaps= 2 total=62067 # 1rttA.181.75 read from T0547.t04.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)A189 (1rttA)N84 because L (left) conformation "forbidden" or filtered. T0547 181 :GLRVRLHS 1rttA 76 :LLFATPEY Number of specific fragments extracted= 1 number of extra gaps= 1 total=62068 1zr5A expands to /projects/compbio/data/pdb/1zr5.pdb.gz 1zr5A:# 1zr5A.181.114 read from T0547.t04.many.frag # adding 1zr5A to template set # found chain 1zr5A in template set T0547 181 :GLRVRLHSA 1zr5A 271 :VIHCNSPVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=62069 # 1ogdA.181.110 read from T0547.t04.many.frag # found chain 1ogdA in template set T0547 181 :GLRVRLHSA 1ogdA 111 :VIRTGEFTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=62070 # 1knwA.182.140 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)R183 (1knwA)R142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1knwA)G148 because Y (epsilon') conformation "forbidden" or filtered. T0547 182 :L 1knwA 141 :L T0547 184 :VRLHS 1knwA 143 :VNPGF T0547 190 :G 1knwA 149 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=62073 # 1wn5A.182.30 read from T0547.t04.many.frag # found chain 1wn5A in training set Warning: unaligning (T0547)A189 (1wn5A)G38 because T (delta_L) conformation "forbidden" or filtered. T0547 182 :LRVRLHS 1wn5A 31 :SAALSSD T0547 190 :G 1wn5A 39 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=62075 # 2bw4A.182.82 read from T0547.t04.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)R183 (2bw4A)R84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2bw4A)N91 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :L 2bw4A 83 :L T0547 184 :VRLHSA 2bw4A 85 :LINPDT Number of specific fragments extracted= 2 number of extra gaps= 2 total=62077 # 2cuaA.182.71 read from T0547.t04.many.frag # found chain 2cuaA in training set Warning: unaligning (T0547)R185 (2cuaA)T108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2cuaA)I113 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRV 2cuaA 105 :FKI T0547 186 :LHSA 2cuaA 109 :SPDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=62079 # 1w0nA.182.60 read from T0547.t04.many.frag # found chain 1w0nA in training set T0547 182 :LRVRLHSAG 1w0nA 61 :VRGASSNAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62080 # 1hqz1.182.32 read from T0547.t04.many.frag # found chain 1hqz1 in template set T0547 182 :LRVRLHSAG 1hqz1 33 :LIISPNAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=62081 # 2fkcA.182.64 read from T0547.t04.many.frag # found chain 2fkcA in template set T0547 182 :LRVRLHSAG 2fkcA 65 :VQVLVFYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=62082 # 2calA.182.40 read from T0547.t04.many.frag # found chain 2calA in training set Warning: unaligning (T0547)R185 (2calA)V1045 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2calA)P1050 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRV 2calA 1042 :AAA T0547 186 :LHSA 2calA 1046 :LPGF Number of specific fragments extracted= 2 number of extra gaps= 2 total=62084 # 1iv3A.182.95 read from T0547.t04.many.frag # found chain 1iv3A in training set Warning: unaligning (T0547)S188 (1iv3A)R102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1iv3A)P103 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1iv3A)K104 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRVRLH 1iv3A 96 :LVLTLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=62085 # 1h1nA.182.196 read from T0547.t04.many.frag # found chain 1h1nA in training set T0547 182 :LRVRLHSAG 1h1nA 197 :MHQYLDSDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62086 # 1jfrA.182.84 read from T0547.t04.many.frag # found chain 1jfrA in template set T0547 182 :LRVRLHSAG 1jfrA 85 :FTIDTNTTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=62087 # 1y60A.182.23 read from T0547.t04.many.frag # found chain 1y60A in template set Warning: unaligning (T0547)R185 (1y60A)G28 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1y60A)R30 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRV 1y60A 25 :LII T0547 186 :L 1y60A 29 :P T0547 188 :SAG 1y60A 31 :GSP Number of specific fragments extracted= 3 number of extra gaps= 2 total=62090 # 1zdyA.182.49 read from T0547.t04.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)R185 (1zdyA)A53 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1zdyA)G55 because S (epsilon) conformation "forbidden" or filtered. T0547 182 :LRV 1zdyA 50 :FSM T0547 186 :L 1zdyA 54 :S T0547 188 :SAG 1zdyA 56 :RHS Number of specific fragments extracted= 3 number of extra gaps= 2 total=62093 # 1ogoX.182.111 read from T0547.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0547)A189 (1ogoX)G119 because T (delta_L) conformation "forbidden" or filtered. T0547 182 :LRVRLHS 1ogoX 112 :VKILATD T0547 190 :G 1ogoX 120 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=62095 # 1ob8A.182.85 read from T0547.t04.many.frag # found chain 1ob8A in training set T0547 182 :LRVRLHSAG 1ob8A 86 :IAIKFKQVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=62096 # 1zx1A.182.7 read from T0547.t04.many.frag # found chain 1zx1A in template set Warning: unaligning (T0547)G190 (1zx1A)K15 because G (3-10) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1zx1A 7 :IVYAHQEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=62097 # 1uwfA.182.106 read from T0547.t04.many.frag # found chain 1uwfA in training set Warning: unaligning (T0547)G190 (1uwfA)A115 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1uwfA 107 :LYLTPVSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=62098 # 1pz4A.182.37 read from T0547.t04.many.frag # found chain 1pz4A in training set Warning: unaligning (T0547)H187 (1pz4A)G37 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1pz4A)G38 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1pz4A)V40 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRVRL 1pz4A 32 :FRITQ T0547 189 :A 1pz4A 39 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=62100 # 1x3mA.182.20 read from T0547.t04.many.frag # found chain 1x3mA in template set T0547 182 :LRVRLHSAG 1x3mA 8 :LVINCGSSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=62101 # 2pth.182.131 read from T0547.t04.many.frag # found chain 2pth in training set T0547 182 :LRVRLHSAG 2pth 132 :LRIGIGHPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62102 # 2bh1A.182.6 read from T0547.t04.many.frag # found chain 2bh1A in template set T0547 182 :LRVRLHSAG 2bh1A 7 :VRLSSQKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=62103 # 1t0fA.182.117 read from T0547.t04.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)A189 (1t0fA)G122 because S (epsilon) conformation "forbidden" or filtered. T0547 182 :LRVRLHS 1t0fA 115 :FLVDCKD T0547 190 :G 1t0fA 123 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=62105 # 1ezwA.182.7 read from T0547.t04.many.frag # found chain 1ezwA in training set T0547 182 :LRVRLHSAG 1ezwA 8 :IELLPDDKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=62106 # 1q2lA.182.255 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 182 :LRVRLHSAG 1q2lA 279 :IHYVPALPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=62107 # 1z6nA.182.113 read from T0547.t04.many.frag # found chain 1z6nA in training set Warning: unaligning (T0547)S188 (1z6nA)E120 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1z6nA)F121 because L (left) conformation "forbidden" or filtered. T0547 182 :LRVRLH 1z6nA 114 :VLVLDE T0547 190 :G 1z6nA 122 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=62109 # 2b8nA.182.195 read from T0547.t04.many.frag # found chain 2b8nA in template set T0547 182 :LRVRLHSAG 2b8nA 184 :ALVLSDVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62110 # 1q3iA.182.107 read from T0547.t04.many.frag # found chain 1q3iA in template set T0547 182 :LRVRLHSAG 1q3iA 485 :IHEREDNPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=62111 # 2bgcA.182.162 read from T0547.t04.many.frag # found chain 2bgcA in template set Warning: unaligning (T0547)A189 (2bgcA)L169 because L (left) conformation "forbidden" or filtered. T0547 182 :LRVRLHS 2bgcA 162 :IKITLDN T0547 190 :G 2bgcA 170 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=62113 # 1ae9A.182.52 read from T0547.t04.many.frag # found chain 1ae9A in template set T0547 182 :LRVRLHSAG 1ae9A 229 :LYVEQSKTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62114 # 1ga6A.182.100 read from T0547.t04.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)G190 (1ga6A)S109 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1ga6A 101 :FYMADQSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=62115 # 1hqz1.183.33 read from T0547.t04.many.frag # found chain 1hqz1 in template set T0547 183 :RVRLHSAGV 1hqz1 34 :IISPNAKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=62116 # 1iv3A.183.96 read from T0547.t04.many.frag # found chain 1iv3A in training set Warning: unaligning (T0547)L186 (1iv3A)L100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1iv3A)R102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1iv3A)P103 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1iv3A)K104 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RVR 1iv3A 97 :VLT T0547 187 :H 1iv3A 101 :D T0547 191 :V 1iv3A 105 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=62119 # 1w0nA.183.61 read from T0547.t04.many.frag # found chain 1w0nA in training set Warning: unaligning (T0547)R183 (1w0nA)R62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1w0nA)A64 because Y (epsilon') conformation "forbidden" or filtered. T0547 184 :V 1w0nA 63 :G T0547 186 :LHSAGV 1w0nA 65 :SSNAGT Number of specific fragments extracted= 2 number of extra gaps= 2 total=62121 # 1uwfA.183.107 read from T0547.t04.many.frag # found chain 1uwfA in training set T0547 183 :RVRLHSAGV 1uwfA 108 :YLTPVSSAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62122 # 1q3iA.183.108 read from T0547.t04.many.frag # found chain 1q3iA in template set T0547 183 :RVRLHSAGV 1q3iA 486 :HEREDNPQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=62123 # 1wn5A.183.31 read from T0547.t04.many.frag # found chain 1wn5A in training set Warning: unaligning (T0547)A189 (1wn5A)G38 because T (delta_L) conformation "forbidden" or filtered. T0547 183 :RVRLHS 1wn5A 32 :AALSSD T0547 190 :GV 1wn5A 39 :RI Number of specific fragments extracted= 2 number of extra gaps= 1 total=62125 # 1su0B.183.46 read from T0547.t04.many.frag # found chain 1su0B in template set Warning: unaligning (T0547)S188 (1su0B)E52 because Y (epsilon') conformation "forbidden" or filtered. T0547 183 :RVRLH 1su0B 47 :TVKFD T0547 189 :AGV 1su0B 53 :DKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=62127 # 1h1nA.183.197 read from T0547.t04.many.frag # found chain 1h1nA in training set T0547 183 :RVRLHSAGV 1h1nA 198 :HQYLDSDGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=62128 # 2bvcA.183.99 read from T0547.t04.many.frag # found chain 2bvcA in template set T0547 183 :RVRLHSAGV 2bvcA 92 :NFFVHDPFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=62129 # 1c93A.183.41 read from T0547.t04.many.frag # found chain 1c93A in template set Warning: unaligning (T0547)G190 (1c93A)T54 because G (3-10) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1c93A 47 :NINYDTG T0547 191 :V 1c93A 55 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=62131 # 1wv8A.183.6 read from T0547.t04.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)G190 (1wv8A)A14 because G (3-10) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1wv8A 7 :QALWDGE T0547 191 :V 1wv8A 15 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=62133 # 1t0fA.183.118 read from T0547.t04.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)A189 (1t0fA)G122 because S (epsilon) conformation "forbidden" or filtered. T0547 183 :RVRLHS 1t0fA 116 :LVDCKD T0547 190 :GV 1t0fA 123 :PF Number of specific fragments extracted= 2 number of extra gaps= 1 total=62135 2alaA expands to /projects/compbio/data/pdb/2ala.pdb.gz 2alaA:# 2alaA.183.133 read from T0547.t04.many.frag # adding 2alaA to template set # found chain 2alaA in template set Warning: unaligning (T0547)S188 (2alaA)N139 because D (zeta) conformation "forbidden" or filtered. T0547 183 :RVRLH 2alaA 134 :RVMYG T0547 189 :AGV 2alaA 140 :VNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=62137 # 2bgcA.183.163 read from T0547.t04.many.frag # found chain 2bgcA in template set T0547 183 :RVRLHSAGV 2bgcA 163 :KITLDNLTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=62138 # 1vzyA.183.159 read from T0547.t04.many.frag # found chain 1vzyA in template set T0547 183 :RVRLHSAGV 1vzyA 160 :GVLVNPDNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=62139 # 2bw3A.183.104 read from T0547.t04.many.frag # found chain 2bw3A in template set T0547 183 :RVRLHSAGV 2bw3A 180 :DLWTDNYIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=62140 # 1ae9A.183.53 read from T0547.t04.many.frag # found chain 1ae9A in template set T0547 183 :RVRLHSAGV 1ae9A 230 :YVEQSKTGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=62141 # 1t9iA.183.25 read from T0547.t04.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)G190 (1t9iA)Y33 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1t9iA 26 :QIKPNQS T0547 191 :V 1t9iA 34 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=62143 # 1pz4A.183.38 read from T0547.t04.many.frag # found chain 1pz4A in training set Warning: unaligning (T0547)H187 (1pz4A)G37 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1pz4A)V40 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RVRL 1pz4A 33 :RITQ T0547 188 :SA 1pz4A 38 :GK T0547 191 :V 1pz4A 41 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=62146 # 1knwA.183.141 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)H187 (1knwA)G146 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1knwA)G148 because Y (epsilon') conformation "forbidden" or filtered. T0547 183 :RVRL 1knwA 142 :RVNP T0547 188 :S 1knwA 147 :F T0547 190 :GV 1knwA 149 :HG Number of specific fragments extracted= 3 number of extra gaps= 2 total=62149 # 1y60A.183.24 read from T0547.t04.many.frag # found chain 1y60A in template set Warning: unaligning (T0547)R185 (1y60A)G28 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1y60A)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 183 :RV 1y60A 26 :II T0547 186 :LH 1y60A 29 :PR T0547 189 :AGV 1y60A 32 :SPA Number of specific fragments extracted= 3 number of extra gaps= 2 total=62152 # 1jh6A.183.11 read from T0547.t04.many.frag # found chain 1jh6A in training set T0547 183 :RVRLHSAGV 1jh6A 12 :WALPDEESE Number of specific fragments extracted= 1 number of extra gaps= 0 total=62153 # 2calA.183.41 read from T0547.t04.many.frag # found chain 2calA in training set Warning: unaligning (T0547)R185 (2calA)V1045 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2calA)P1050 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RV 2calA 1043 :AA T0547 186 :LHSA 2calA 1046 :LPGF T0547 191 :V 2calA 1051 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=62156 # 1zx1A.183.8 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 183 :RVRLHSAGV 1zx1A 8 :VYAHQEPKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=62157 # 1o9wA.183.82 read from T0547.t04.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)G190 (1o9wA)K90 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1o9wA 83 :LIWMGDT T0547 191 :V 1o9wA 91 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=62159 # 1p35A.183.15 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)G190 (1p35A)Q24 because G (3-10) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1p35A 17 :RDCQVDK T0547 191 :V 1p35A 25 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=62161 # 1i40A.183.105 read from T0547.t04.many.frag # found chain 1i40A in template set T0547 183 :RVRLHSAGV 1i40A 106 :VAVPHSKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=62162 # 1vbwA.183.51 read from T0547.t04.many.frag # found chain 1vbwA in training set Warning: unaligning (T0547)R185 (1vbwA)W54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1vbwA)T56 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RV 1vbwA 52 :RV T0547 186 :L 1vbwA 55 :V T0547 188 :SAGV 1vbwA 57 :ERGI Number of specific fragments extracted= 3 number of extra gaps= 2 total=62165 # 1jfrA.183.85 read from T0547.t04.many.frag # found chain 1jfrA in template set T0547 183 :RVRLHSAGV 1jfrA 86 :TIDTNTTLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=62166 # 1ogdA.183.112 read from T0547.t04.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)A189 (1ogdA)P119 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RVRLHS 1ogdA 113 :RTGEFT T0547 190 :GV 1ogdA 120 :YA Number of specific fragments extracted= 2 number of extra gaps= 1 total=62168 # 1hqz1.184.34 read from T0547.t04.many.frag # found chain 1hqz1 in template set T0547 184 :VRLHSAGVG 1hqz1 35 :ISPNAKKEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=62169 # 1q3iA.184.109 read from T0547.t04.many.frag # found chain 1q3iA in template set T0547 184 :VRLHSAGVG 1q3iA 487 :EREDNPQSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=62170 # 1wv8A.184.7 read from T0547.t04.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)V191 (1wv8A)G15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1wv8A)V16 because Y (epsilon') conformation "forbidden" or filtered. T0547 184 :VRLHSAG 1wv8A 8 :ALWDGEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=62171 # 1w0nA.184.62 read from T0547.t04.many.frag # found chain 1w0nA in training set Warning: unaligning (T0547)S188 (1w0nA)N67 because Y (epsilon') conformation "forbidden" or filtered. T0547 184 :VRLH 1w0nA 63 :GASS T0547 189 :AGVG 1w0nA 68 :AGTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=62173 # 1iv3A.184.97 read from T0547.t04.many.frag # found chain 1iv3A in training set Warning: unaligning (T0547)S188 (1iv3A)R102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1iv3A)P103 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1iv3A)G106 because H (helix) conformation "forbidden" or filtered. T0547 184 :VRLH 1iv3A 98 :LTLD T0547 190 :GV 1iv3A 104 :KL Number of specific fragments extracted= 2 number of extra gaps= 2 total=62175 # 1c93A.184.42 read from T0547.t04.many.frag # found chain 1c93A in template set Warning: unaligning (T0547)V191 (1c93A)K55 because L (left) conformation "forbidden" or filtered. T0547 184 :VRLHSAG 1c93A 48 :INYDTGT T0547 192 :G 1c93A 56 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=62177 # 2bvcA.184.100 read from T0547.t04.many.frag # found chain 2bvcA in template set T0547 184 :VRLHSAGVG 2bvcA 93 :FFVHDPFTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=62178 # 2alaA.184.134 read from T0547.t04.many.frag # found chain 2alaA in template set Warning: unaligning (T0547)G190 (2alaA)N141 because G (3-10) conformation "forbidden" or filtered. T0547 184 :VRLHSA 2alaA 135 :VMYGNV T0547 191 :VG 2alaA 142 :QT Number of specific fragments extracted= 2 number of extra gaps= 1 total=62180 # 1o9wA.184.83 read from T0547.t04.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)H187 (1o9wA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0547 184 :VRL 1o9wA 84 :IWM T0547 188 :SAGVG 1o9wA 88 :DTKYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=62182 # 1su0B.184.47 read from T0547.t04.many.frag # found chain 1su0B in template set Warning: unaligning (T0547)S188 (1su0B)E52 because Y (epsilon') conformation "forbidden" or filtered. T0547 184 :VRLH 1su0B 48 :VKFD T0547 189 :AGVG 1su0B 53 :DKIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=62184 # 1uwfA.184.108 read from T0547.t04.many.frag # found chain 1uwfA in training set Warning: unaligning (T0547)H187 (1uwfA)V112 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1uwfA)A115 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRL 1uwfA 109 :LTP T0547 188 :SA 1uwfA 113 :SS T0547 191 :VG 1uwfA 116 :GG Number of specific fragments extracted= 3 number of extra gaps= 2 total=62187 # 1ae9A.184.54 read from T0547.t04.many.frag # found chain 1ae9A in template set T0547 184 :VRLHSAGVG 1ae9A 231 :VEQSKTGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=62188 # 2bgcA.184.164 read from T0547.t04.many.frag # found chain 2bgcA in template set Warning: unaligning (T0547)A189 (2bgcA)L169 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2bgcA)T170 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRLHS 2bgcA 164 :ITLDN T0547 191 :VG 2bgcA 171 :MQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=62190 # 1wn5A.184.32 read from T0547.t04.many.frag # found chain 1wn5A in training set Warning: unaligning (T0547)A189 (1wn5A)G38 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1wn5A)R39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1wn5A)F41 because E (beta_S) conformation "forbidden" or filtered. T0547 184 :VRLHS 1wn5A 33 :ALSSD T0547 191 :V 1wn5A 40 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=62192 # 1t0fA.184.119 read from T0547.t04.many.frag # found chain 1t0fA in template set T0547 184 :VRLHSAGVG 1t0fA 117 :VDCKDGPFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=62193 # 1p35A.184.16 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)S188 (1p35A)D22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1p35A)Q24 because G (3-10) conformation "forbidden" or filtered. T0547 184 :VRLH 1p35A 18 :DCQV T0547 189 :A 1p35A 23 :K T0547 191 :VG 1p35A 25 :TR Number of specific fragments extracted= 3 number of extra gaps= 2 total=62196 # 1zxmA.184.78 read from T0547.t04.many.frag # found chain 1zxmA in template set Warning: unaligning (T0547)G190 (1zxmA)N113 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1zxmA)N114 because L (left) conformation "forbidden" or filtered. T0547 184 :VRLHSA 1zxmA 107 :VTIDPE T0547 192 :G 1zxmA 115 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=62198 # 1h1nA.184.198 read from T0547.t04.many.frag # found chain 1h1nA in training set T0547 184 :VRLHSAGVG 1h1nA 199 :QYLDSDGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62199 # 1fy7A.184.119 read from T0547.t04.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)H187 (1fy7A)D280 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1fy7A)H285 because E (beta_S) conformation "forbidden" or filtered. T0547 184 :VRL 1fy7A 277 :TRR T0547 188 :SAGV 1fy7A 281 :ELGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=62201 # 1y60A.184.25 read from T0547.t04.many.frag # found chain 1y60A in template set Warning: unaligning (T0547)R185 (1y60A)G28 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1y60A)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 184 :V 1y60A 27 :I T0547 186 :LH 1y60A 29 :PR T0547 189 :AGVG 1y60A 32 :SPAE Number of specific fragments extracted= 3 number of extra gaps= 2 total=62204 # 1h7sA.184.203 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)H187 (1h7sA)G207 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRL 1h7sA 204 :NQL T0547 188 :SAGV 1h7sA 208 :QGKR Number of specific fragments extracted= 2 number of extra gaps= 2 total=62206 # 1pz4A.184.39 read from T0547.t04.many.frag # found chain 1pz4A in training set Warning: unaligning (T0547)S188 (1pz4A)G38 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1pz4A)V40 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1pz4A)K42 because E (beta_S) conformation "forbidden" or filtered. T0547 184 :VRLH 1pz4A 34 :ITQG T0547 189 :A 1pz4A 39 :K T0547 191 :V 1pz4A 41 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=62209 # 1x99A.184.70 read from T0547.t04.many.frag # found chain 1x99A in training set T0547 184 :VRLHSAGVG 1x99A 71 :VGVHNYKRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=62210 # 1jfrA.184.86 read from T0547.t04.many.frag # found chain 1jfrA in template set Warning: unaligning (T0547)R185 (1jfrA)D88 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1jfrA)Q95 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :V 1jfrA 87 :I T0547 186 :LHSAGV 1jfrA 89 :TNTTLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=62212 # 1xdnA.184.49 read from T0547.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)S188 (1xdnA)G101 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1xdnA)D102 because G (3-10) conformation "forbidden" or filtered. T0547 184 :VRLH 1xdnA 97 :LINQ T0547 190 :GVG 1xdnA 103 :HEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=62214 # 1zx1A.184.9 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 184 :VRLHSAGVG 1zx1A 9 :YAHQEPKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=62215 # 1h7sA.184.123 read from T0547.t04.many.frag # found chain 1h7sA in template set T0547 184 :VRLHSAGVG 1h7sA 124 :TCHASAKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62216 # 2bw3A.184.105 read from T0547.t04.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)V191 (2bw3A)K188 because L (left) conformation "forbidden" or filtered. T0547 184 :VRLHSAG 2bw3A 181 :LWTDNYI T0547 192 :G 2bw3A 189 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=62218 # 1t9iA.184.26 read from T0547.t04.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)A189 (1t9iA)S32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1t9iA)Y33 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRLHS 1t9iA 27 :IKPNQ T0547 191 :VG 1t9iA 34 :KF Number of specific fragments extracted= 2 number of extra gaps= 1 total=62220 # 1ztpA.184.159 read from T0547.t04.many.frag # found chain 1ztpA in template set Warning: unaligning (T0547)V191 (1ztpA)G167 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1ztpA)G168 because S (epsilon) conformation "forbidden" or filtered. T0547 184 :VRLHSAG 1ztpA 160 :VSPRAKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=62221 # 1hqz1.185.35 read from T0547.t04.many.frag # found chain 1hqz1 in template set T0547 185 :RLHSAGVGI 1hqz1 36 :SPNAKKEYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=62222 # 1q3iA.185.110 read from T0547.t04.many.frag # found chain 1q3iA in template set T0547 185 :RLHSAGVGI 1q3iA 488 :REDNPQSHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=62223 # 1wv8A.185.8 read from T0547.t04.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)V191 (1wv8A)G15 because L (left) conformation "forbidden" or filtered. T0547 185 :RLHSAG 1wv8A 9 :LWDGEA T0547 192 :GI 1wv8A 16 :VW Number of specific fragments extracted= 2 number of extra gaps= 1 total=62225 # 1c93A.185.43 read from T0547.t04.many.frag # found chain 1c93A in template set T0547 185 :RLHSAGVGI 1c93A 49 :NYDTGTKTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=62226 # 1w0nA.185.63 read from T0547.t04.many.frag # found chain 1w0nA in training set Warning: unaligning (T0547)R185 (1w0nA)A64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1w0nA)N67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1w0nA)G69 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :LH 1w0nA 65 :SS T0547 189 :A 1w0nA 68 :A T0547 191 :VGI 1w0nA 70 :TAK Number of specific fragments extracted= 3 number of extra gaps= 3 total=62229 # 1o9wA.185.84 read from T0547.t04.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)G190 (1o9wA)K90 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RLHSA 1o9wA 85 :WMGDT T0547 191 :VGI 1o9wA 91 :YSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=62231 # 1uwfA.185.109 read from T0547.t04.many.frag # found chain 1uwfA in training set Warning: unaligning (T0547)H187 (1uwfA)V112 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1uwfA)A115 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RL 1uwfA 110 :TP T0547 188 :SA 1uwfA 113 :SS T0547 191 :VGI 1uwfA 116 :GGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=62234 # 1h7sA.185.204 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G192 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RLHSAGV 1h7sA 205 :QLGQGKR T0547 193 :I 1h7sA 213 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=62236 # 1iv3A.185.98 read from T0547.t04.many.frag # found chain 1iv3A in training set Warning: unaligning (T0547)S188 (1iv3A)R102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1iv3A)P103 because C (cis) conformation "forbidden" or filtered. T0547 185 :RLH 1iv3A 99 :TLD T0547 190 :GVGI 1iv3A 104 :KLGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=62238 # 1x99A.185.71 read from T0547.t04.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)R185 (1x99A)G72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1x99A)H74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1x99A)Y76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (1x99A)C80 because Y (epsilon') conformation "forbidden" or filtered. T0547 186 :L 1x99A 73 :V T0547 188 :S 1x99A 75 :N T0547 190 :GVG 1x99A 77 :KRW Number of specific fragments extracted= 3 number of extra gaps= 4 total=62241 # 1ae9A.185.55 read from T0547.t04.many.frag # found chain 1ae9A in template set Warning: unaligning (T0547)G192 (1ae9A)K239 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLHSAGV 1ae9A 232 :EQSKTGV T0547 193 :I 1ae9A 240 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=62243 # 2bvcA.185.101 read from T0547.t04.many.frag # found chain 2bvcA in template set T0547 185 :RLHSAGVGI 2bvcA 94 :FVHDPFTLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=62244 # 1zxmA.185.79 read from T0547.t04.many.frag # found chain 1zxmA in template set Warning: unaligning (T0547)G190 (1zxmA)N113 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1zxmA)N114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1zxmA)L115 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLHSA 1zxmA 108 :TIDPE T0547 193 :I 1zxmA 116 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=62246 # 2alaA.185.135 read from T0547.t04.many.frag # found chain 2alaA in template set Warning: unaligning (T0547)G190 (2alaA)N141 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (2alaA)T143 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLHSA 2alaA 136 :MYGNV T0547 191 :V 2alaA 142 :Q T0547 193 :I 2alaA 144 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=62249 # 1p35A.185.17 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)S188 (1p35A)D22 because Y (epsilon') conformation "forbidden" or filtered. T0547 185 :RLH 1p35A 19 :CQV T0547 189 :AGVGI 1p35A 23 :KQTRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=62251 # 1t0fA.185.120 read from T0547.t04.many.frag # found chain 1t0fA in template set T0547 185 :RLHSAGVGI 1t0fA 118 :DCKDGPFEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=62252 # 1wn5A.185.33 read from T0547.t04.many.frag # found chain 1wn5A in training set T0547 185 :RLHSAGVGI 1wn5A 34 :LSSDGRIFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=62253 # 1h7sA.185.124 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)A189 (1h7sA)A129 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RLHS 1h7sA 125 :CHAS T0547 190 :GVGI 1h7sA 130 :KVGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=62255 # 1ogdA.185.114 read from T0547.t04.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)H187 (1ogdA)F117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1ogdA)N122 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RL 1ogdA 115 :GE T0547 188 :SAGV 1ogdA 118 :TPYA T0547 193 :I 1ogdA 123 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=62258 # 2bgcA.185.165 read from T0547.t04.many.frag # found chain 2bgcA in template set Warning: unaligning (T0547)A189 (2bgcA)L169 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2bgcA)T170 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RLHS 2bgcA 165 :TLDN T0547 191 :VGI 2bgcA 171 :MQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=62260 # 1su0B.185.48 read from T0547.t04.many.frag # found chain 1su0B in template set Warning: unaligning (T0547)G190 (1su0B)K54 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RLHSA 1su0B 49 :KFDED T0547 191 :VGI 1su0B 55 :IED Number of specific fragments extracted= 2 number of extra gaps= 1 total=62262 # 1ucdA.185.151 read from T0547.t04.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)H187 (1ucdA)D154 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1ucdA)T157 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1ucdA)V159 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RL 1ucdA 152 :RT T0547 188 :SA 1ucdA 155 :PQ T0547 191 :V 1ucdA 158 :K T0547 193 :I 1ucdA 160 :S Number of specific fragments extracted= 4 number of extra gaps= 3 total=62266 # 1xdnA.185.50 read from T0547.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)G190 (1xdnA)H103 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1xdnA)E104 because Y (epsilon') conformation "forbidden" or filtered. T0547 185 :RLHSA 1xdnA 98 :INQGD T0547 192 :GI 1xdnA 105 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=62268 # 1fy7A.185.120 read from T0547.t04.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)H187 (1fy7A)D280 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1fy7A)L282 because G (3-10) conformation "forbidden" or filtered. T0547 185 :RL 1fy7A 278 :RR T0547 188 :S 1fy7A 281 :E T0547 190 :GVGI 1fy7A 283 :GHHL Number of specific fragments extracted= 3 number of extra gaps= 2 total=62271 # 1mzbA.185.72 read from T0547.t04.many.frag # found chain 1mzbA in template set Warning: unaligning (T0547)S188 (1mzbA)G74 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1mzbA)V78 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLH 1mzbA 71 :NFD T0547 189 :AGV 1mzbA 75 :GHA T0547 193 :I 1mzbA 79 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=62274 # 1p42A.185.27 read from T0547.t04.many.frag # found chain 1p42A in template set Warning: unaligning (T0547)A189 (1p42A)E33 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RLHS 1p42A 29 :HPEK T0547 190 :GVGI 1p42A 34 :GTGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=62276 # 1egwA.185.46 read from T0547.t04.many.frag # found chain 1egwA in training set Warning: unaligning (T0547)A189 (1egwA)N52 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1egwA)K53 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1egwA)F55 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLHS 1egwA 48 :FNSS T0547 191 :V 1egwA 54 :L T0547 193 :I 1egwA 56 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=62279 1lml expands to /projects/compbio/data/pdb/1lml.pdb.gz 1lml:Warning: there is no chain 1lml will retry with 1lmlA # 1lml.185.117 read from T0547.t04.many.frag # adding 1lml to template set # found chain 1lml in template set Warning: unaligning (T0547)H187 (1lml)S219 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (1lml)A225 because Y (epsilon') conformation "forbidden" or filtered. T0547 185 :RL 1lml 217 :VP T0547 188 :SAGVG 1lml 220 :EEGVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=62281 # 1y60A.185.26 read from T0547.t04.many.frag # found chain 1y60A in template set Warning: unaligning (T0547)S188 (1y60A)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1y60A)S32 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLH 1y60A 28 :GPR T0547 190 :GVGI 1y60A 33 :PAET Number of specific fragments extracted= 2 number of extra gaps= 1 total=62283 # 1rkuA.185.115 read from T0547.t04.many.frag # found chain 1rkuA in training set Warning: unaligning (T0547)G192 (1rkuA)V122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (1rkuA)V123 because G (3-10) conformation "forbidden" or filtered. T0547 185 :RLHSAGV 1rkuA 115 :EIDDSDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=62284 # 1q3iA.186.111 read from T0547.t04.many.frag # found chain 1q3iA in template set Warning: unaligning (T0547)S188 (1q3iA)N492 because D (zeta) conformation "forbidden" or filtered. T0547 186 :LH 1q3iA 489 :ED T0547 189 :AGVGIW 1q3iA 493 :PQSHVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=62286 # 1hqz1.186.36 read from T0547.t04.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)H187 (1hqz1)N38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1hqz1)Y43 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :L 1hqz1 37 :P T0547 188 :SAGV 1hqz1 39 :AKKE T0547 193 :IW 1hqz1 44 :EP Number of specific fragments extracted= 3 number of extra gaps= 2 total=62289 # 1wv8A.186.9 read from T0547.t04.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)G190 (1wv8A)A14 because G (3-10) conformation "forbidden" or filtered. T0547 186 :LHSA 1wv8A 10 :WDGE T0547 191 :VGIW 1wv8A 15 :GVWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=62291 # 1h7sA.186.205 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)S188 (1h7sA)Q208 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1h7sA)K210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :LH 1h7sA 206 :LG T0547 189 :A 1h7sA 209 :G T0547 191 :V 1h7sA 211 :R T0547 193 :IW 1h7sA 213 :PV Number of specific fragments extracted= 4 number of extra gaps= 3 total=62295 # 1c93A.186.44 read from T0547.t04.many.frag # found chain 1c93A in template set Warning: unaligning (T0547)V191 (1c93A)K55 because L (left) conformation "forbidden" or filtered. T0547 186 :LHSAG 1c93A 50 :YDTGT T0547 192 :GIW 1c93A 56 :TAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=62297 # 1x99A.186.72 read from T0547.t04.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)S188 (1x99A)N75 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1x99A)W79 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1x99A)D81 because Y (epsilon') conformation "forbidden" or filtered. T0547 186 :LH 1x99A 73 :VH T0547 189 :AGV 1x99A 76 :YKR T0547 193 :I 1x99A 80 :C Number of specific fragments extracted= 3 number of extra gaps= 3 total=62300 # 1w0nA.186.64 read from T0547.t04.many.frag # found chain 1w0nA in training set Warning: unaligning (T0547)S188 (1w0nA)N67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1w0nA)A71 because E (beta_S) conformation "forbidden" or filtered. T0547 186 :LH 1w0nA 65 :SS T0547 189 :AGV 1w0nA 68 :AGT T0547 193 :IW 1w0nA 72 :KV Number of specific fragments extracted= 3 number of extra gaps= 2 total=62303 # 1ogdA.186.115 read from T0547.t04.many.frag # found chain 1ogdA in template set T0547 186 :LHSAGVGIW 1ogdA 116 :EFTPYANCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=62304 # 2alaA.186.136 read from T0547.t04.many.frag # found chain 2alaA in template set T0547 186 :LHSAGVGIW 2alaA 137 :YGNVNQTVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=62305 # 1ae9A.186.56 read from T0547.t04.many.frag # found chain 1ae9A in template set Warning: unaligning (T0547)G192 (1ae9A)K239 because E (beta_S) conformation "forbidden" or filtered. T0547 186 :LHSAGV 1ae9A 233 :QSKTGV T0547 193 :IW 1ae9A 240 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=62307 # 1o9wA.186.85 read from T0547.t04.many.frag # found chain 1o9wA in template set T0547 186 :LHSAGVGIW 1o9wA 86 :MGDTKYSRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62308 # 1p35A.186.18 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)S188 (1p35A)D22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1p35A)Q24 because G (3-10) conformation "forbidden" or filtered. T0547 186 :LH 1p35A 20 :QV T0547 189 :A 1p35A 23 :K T0547 191 :VGIW 1p35A 25 :TREL Number of specific fragments extracted= 3 number of extra gaps= 2 total=62311 1wwhA expands to /projects/compbio/data/pdb/1wwh.pdb.gz 1wwhA:# 1wwhA.186.54 read from T0547.t04.many.frag # adding 1wwhA to template set # found chain 1wwhA in template set T0547 186 :LHSAGVGIW 1wwhA 203 :MSNTGNWMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=62312 # 1mzbA.186.73 read from T0547.t04.many.frag # found chain 1mzbA in template set Warning: unaligning (T0547)S188 (1mzbA)G74 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1mzbA)G75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1mzbA)H76 because E (beta_S) conformation "forbidden" or filtered. T0547 186 :LH 1mzbA 72 :FD T0547 191 :VGIW 1mzbA 77 :AVFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=62314 # 1h7sA.186.125 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G192 (1h7sA)G132 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :LHSAGV 1h7sA 126 :HASAKV T0547 193 :IW 1h7sA 133 :TR Number of specific fragments extracted= 2 number of extra gaps= 1 total=62316 # 2bh1A.186.10 read from T0547.t04.many.frag # found chain 2bh1A in template set T0547 186 :LHSAGVGIW 2bh1A 11 :SQKEADIPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=62317 # 1t62A.186.75 read from T0547.t04.many.frag # found chain 1t62A in template set Warning: unaligning (T0547)A189 (1t62A)S1079 because L (left) conformation "forbidden" or filtered. T0547 186 :LHS 1t62A 1076 :DGQ T0547 190 :GVGIW 1t62A 1080 :QPLAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=62319 # 1lml.186.118 read from T0547.t04.many.frag # found chain 1lml in template set Warning: unaligning (T0547)H187 (1lml)S219 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1lml)E221 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (1lml)A225 because Y (epsilon') conformation "forbidden" or filtered. T0547 186 :L 1lml 218 :P T0547 188 :S 1lml 220 :E T0547 190 :GVG 1lml 222 :GVL T0547 194 :W 1lml 226 :W Number of specific fragments extracted= 4 number of extra gaps= 3 total=62323 # 2bvcA.186.102 read from T0547.t04.many.frag # found chain 2bvcA in template set T0547 186 :LHSAGVGIW 2bvcA 95 :VHDPFTLEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=62324 # 1zxmA.186.80 read from T0547.t04.many.frag # found chain 1zxmA in template set Warning: unaligning (T0547)V191 (1zxmA)N114 because L (left) conformation "forbidden" or filtered. T0547 186 :LHSAG 1zxmA 109 :IDPEN T0547 192 :GIW 1zxmA 115 :LIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=62326 # 1rkuA.186.116 read from T0547.t04.many.frag # found chain 1rkuA in training set Warning: unaligning (T0547)H187 (1rkuA)D117 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1rkuA)V122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1rkuA)G124 because Y (epsilon') conformation "forbidden" or filtered. T0547 186 :L 1rkuA 116 :I T0547 188 :SAGV 1rkuA 118 :DSDR T0547 193 :I 1rkuA 123 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=62329 # 1jx4A.186.34 read from T0547.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)L186 (1jx4A)G35 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1jx4A)V43 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSAGVGI 1jx4A 36 :RFEDSGA Number of specific fragments extracted= 1 number of extra gaps= 2 total=62330 # 1uwfA.186.110 read from T0547.t04.many.frag # found chain 1uwfA in training set Warning: unaligning (T0547)G190 (1uwfA)A115 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1uwfA)G117 because S (epsilon) conformation "forbidden" or filtered. T0547 186 :LHSA 1uwfA 111 :PVSS T0547 191 :V 1uwfA 116 :G T0547 193 :IW 1uwfA 118 :VA Number of specific fragments extracted= 3 number of extra gaps= 2 total=62333 # 1ucdA.186.152 read from T0547.t04.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)H187 (1ucdA)D154 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1ucdA)K158 because T (delta_L) conformation "forbidden" or filtered. T0547 186 :L 1ucdA 153 :T T0547 188 :SAG 1ucdA 155 :PQT T0547 192 :GIW 1ucdA 159 :VSY Number of specific fragments extracted= 3 number of extra gaps= 2 total=62336 # 1dfuP.186.31 read from T0547.t04.many.frag # found chain 1dfuP in training set Warning: unaligning (T0547)G190 (1dfuP)A36 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :LHSA 1dfuP 32 :GGKE T0547 191 :VGIW 1dfuP 37 :PLAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=62338 # 1t9hA.186.60 read from T0547.t04.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)A189 (1t9hA)D55 because L (left) conformation "forbidden" or filtered. T0547 186 :LHS 1t9hA 52 :AEN T0547 190 :GVGIW 1t9hA 56 :KEGYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=62340 # 1egwA.186.47 read from T0547.t04.many.frag # found chain 1egwA in training set Warning: unaligning (T0547)A189 (1egwA)N52 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1egwA)K53 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1egwA)F55 because E (beta_S) conformation "forbidden" or filtered. T0547 186 :LHS 1egwA 49 :NSS T0547 191 :V 1egwA 54 :L T0547 193 :IW 1egwA 56 :QY Number of specific fragments extracted= 3 number of extra gaps= 2 total=62343 # 1zx1A.186.11 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 186 :LHSAGVGIW 1zx1A 11 :HQEPKSFNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62344 # 1lfdA.186.10 read from T0547.t04.many.frag # found chain 1lfdA in template set T0547 186 :LHSAGVGIW 1lfdA 24 :DVDNGNMYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=62345 # 1p42A.186.28 read from T0547.t04.many.frag # found chain 1p42A in template set Warning: unaligning (T0547)G192 (1p42A)G36 because S (epsilon) conformation "forbidden" or filtered. T0547 186 :LHSAGV 1p42A 30 :PEKEGT T0547 193 :IW 1p42A 37 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=62347 # 1q3iA.187.112 read from T0547.t04.many.frag # found chain 1q3iA in template set Warning: unaligning (T0547)A195 (1q3iA)V499 because E (beta_S) conformation "forbidden" or filtered. T0547 187 :HSAGVGIW 1q3iA 490 :DNPQSHVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=62348 # 1hqz1.187.37 read from T0547.t04.many.frag # found chain 1hqz1 in template set T0547 187 :HSAGVGIWA 1hqz1 38 :NAKKEYEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=62349 # 1wv8A.187.10 read from T0547.t04.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)G190 (1wv8A)A14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1wv8A)G15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1wv8A)A19 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSA 1wv8A 11 :DGE T0547 192 :GIW 1wv8A 16 :VWV Number of specific fragments extracted= 2 number of extra gaps= 2 total=62351 # 1ogdA.187.116 read from T0547.t04.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)I193 (1ogdA)C123 because Y (epsilon') conformation "forbidden" or filtered. T0547 187 :HSAGVG 1ogdA 117 :FTPYAN T0547 194 :WA 1ogdA 124 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=62353 # 1h7sA.187.206 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)H187 (1h7sA)G207 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SAGVGIW 1h7sA 208 :QGKRQPV Number of specific fragments extracted= 1 number of extra gaps= 2 total=62354 # 1wwhA.187.55 read from T0547.t04.many.frag # found chain 1wwhA in template set Warning: unaligning (T0547)G192 (1wwhA)W209 because Y (epsilon') conformation "forbidden" or filtered. T0547 187 :HSAGV 1wwhA 204 :SNTGN T0547 193 :IWA 1wwhA 210 :MHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=62356 # 2bh1A.187.11 read from T0547.t04.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)G190 (2bh1A)A15 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSA 2bh1A 12 :QKE T0547 191 :VGIWA 2bh1A 16 :DIPWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=62358 # 1t62A.187.76 read from T0547.t04.many.frag # found chain 1t62A in template set Warning: unaligning (T0547)A189 (1t62A)S1079 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1t62A)Q1080 because E (beta_S) conformation "forbidden" or filtered. T0547 187 :HS 1t62A 1077 :GQ T0547 191 :VGIWA 1t62A 1081 :PLAII Number of specific fragments extracted= 2 number of extra gaps= 1 total=62360 # 1jx4A.187.35 read from T0547.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)G192 (1jx4A)G41 because S (epsilon) conformation "forbidden" or filtered. T0547 187 :HSAGV 1jx4A 36 :RFEDS T0547 193 :IWA 1jx4A 42 :AVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=62362 # 1lfdA.187.11 read from T0547.t04.many.frag # found chain 1lfdA in template set Warning: unaligning (T0547)S188 (1lfdA)D26 because D (zeta) conformation "forbidden" or filtered. T0547 187 :H 1lfdA 25 :V T0547 189 :AGVGIWA 1lfdA 27 :NGNMYKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=62364 # 1p35A.187.19 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)S188 (1p35A)D22 because Y (epsilon') conformation "forbidden" or filtered. T0547 187 :H 1p35A 21 :V T0547 189 :AGVGIWA 1p35A 23 :KQTRELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=62366 # 1ztpA.187.163 read from T0547.t04.many.frag # found chain 1ztpA in template set Warning: unaligning (T0547)G192 (1ztpA)R169 because E (beta_S) conformation "forbidden" or filtered. T0547 187 :HSAGV 1ztpA 164 :AKEGG T0547 193 :IWA 1ztpA 170 :QVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=62368 # 1mzbA.187.74 read from T0547.t04.many.frag # found chain 1mzbA in template set T0547 187 :HSAGVGIWA 1mzbA 73 :DGGHAVFEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=62369 # 2alaA.187.137 read from T0547.t04.many.frag # found chain 2alaA in template set Warning: unaligning (T0547)H187 (2alaA)G138 because S (epsilon) conformation "forbidden" or filtered. T0547 188 :SAGVGIWA 2alaA 139 :NVNQTVDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=62370 # 1w0nA.187.65 read from T0547.t04.many.frag # found chain 1w0nA in training set Warning: unaligning (T0547)S188 (1w0nA)N67 because Y (epsilon') conformation "forbidden" or filtered. T0547 187 :H 1w0nA 66 :S T0547 189 :AGVGIWA 1w0nA 68 :AGTAKVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=62372 # 1h7sA.187.126 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)A195 (1h7sA)L135 because E (beta_S) conformation "forbidden" or filtered. T0547 187 :HSAGVGIW 1h7sA 127 :ASAKVGTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=62373 # 1ae9A.187.57 read from T0547.t04.many.frag # found chain 1ae9A in template set T0547 187 :HSAGVGIWA 1ae9A 234 :SKTGVKIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=62374 # 1c93A.187.45 read from T0547.t04.many.frag # found chain 1c93A in template set Warning: unaligning (T0547)G190 (1c93A)T54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1c93A)K55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1c93A)T56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1c93A)L59 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSA 1c93A 51 :DTG T0547 193 :IW 1c93A 57 :AY Number of specific fragments extracted= 2 number of extra gaps= 2 total=62376 # 1x99A.187.73 read from T0547.t04.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)S188 (1x99A)N75 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1x99A)Y76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1x99A)K77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1x99A)D81 because Y (epsilon') conformation "forbidden" or filtered. T0547 187 :H 1x99A 74 :H T0547 191 :VGI 1x99A 78 :RWC T0547 195 :A 1x99A 82 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=62379 1u9tA expands to /projects/compbio/data/pdb/1u9t.pdb.gz 1u9tA:# 1u9tA.187.127 read from T0547.t04.many.frag # adding 1u9tA to template set # found chain 1u9tA in template set Warning: unaligning (T0547)G192 (1u9tA)R121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1u9tA)S123 because Y (epsilon') conformation "forbidden" or filtered. T0547 187 :HSAGV 1u9tA 116 :TARGE T0547 193 :I 1u9tA 122 :Q T0547 195 :A 1u9tA 124 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=62382 # 1h16A.187.548 read from T0547.t04.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)H187 (1h16A)D549 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1h16A)A554 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1h16A)D556 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SAGV 1h16A 550 :EDGL T0547 193 :I 1h16A 555 :I T0547 195 :A 1h16A 557 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=62385 # 1ryaA.187.26 read from T0547.t04.many.frag # found chain 1ryaA in training set T0547 187 :HSAGVGIWA 1ryaA 27 :NSRGEFLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62386 # 1o9wA.187.86 read from T0547.t04.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)H187 (1o9wA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SAGVGIWA 1o9wA 88 :DTKYSRGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=62387 # 1lml.187.119 read from T0547.t04.many.frag # found chain 1lml in template set Warning: unaligning (T0547)A189 (1lml)E221 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HS 1lml 219 :SE T0547 190 :GVGIWA 1lml 222 :GVLAWA Number of specific fragments extracted= 2 number of extra gaps= 1 total=62389 # 1xmtA.187.31 read from T0547.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)H187 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1xmtA)K35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1xmtA)M37 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :S 1xmtA 33 :N T0547 191 :V 1xmtA 36 :V T0547 193 :IWA 1xmtA 38 :DLV Number of specific fragments extracted= 3 number of extra gaps= 3 total=62392 # 2bw3A.187.108 read from T0547.t04.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)V191 (2bw3A)K188 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (2bw3A)L192 because D (zeta) conformation "forbidden" or filtered. T0547 187 :HSAG 2bw3A 184 :DNYI T0547 192 :GIW 2bw3A 189 :RNF Number of specific fragments extracted= 2 number of extra gaps= 2 total=62394 # 1xzwA.187.106 read from T0547.t04.many.frag # found chain 1xzwA in template set Warning: unaligning (T0547)G190 (1xzwA)K110 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSA 1xzwA 107 :GDA T0547 191 :VGIWA 1xzwA 111 :RQFWF Number of specific fragments extracted= 2 number of extra gaps= 1 total=62396 # 1dfuP.187.32 read from T0547.t04.many.frag # found chain 1dfuP in training set Warning: unaligning (T0547)H187 (1dfuP)G33 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1dfuP)A36 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SA 1dfuP 34 :KE T0547 191 :VGIWA 1dfuP 37 :PLAIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=62398 # 1kzfA.187.185 read from T0547.t04.many.frag # found chain 1kzfA in training set Warning: unaligning (T0547)H187 (1kzfA)T166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1kzfA)K168 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1kzfA)E169 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1kzfA)I171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1kzfA)L174 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :S 1kzfA 167 :E T0547 191 :V 1kzfA 170 :R T0547 193 :IW 1kzfA 172 :YL Number of specific fragments extracted= 3 number of extra gaps= 4 total=62401 # 1t9hA.187.61 read from T0547.t04.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)G190 (1t9hA)K56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1t9hA)G58 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSA 1t9hA 53 :END T0547 191 :V 1t9hA 57 :E T0547 193 :IWA 1t9hA 59 :YLM Number of specific fragments extracted= 3 number of extra gaps= 2 total=62404 # 1q3iA.188.113 read from T0547.t04.many.frag # found chain 1q3iA in template set Warning: unaligning (T0547)G192 (1q3iA)H496 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :SAGV 1q3iA 492 :NPQS T0547 193 :IWAK 1q3iA 497 :VLVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=62406 # 1hqz1.188.38 read from T0547.t04.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)W194 (1hqz1)P45 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SAGVGI 1hqz1 39 :AKKEYE T0547 195 :AK 1hqz1 46 :ES Number of specific fragments extracted= 2 number of extra gaps= 1 total=62408 # 2bh1A.188.12 read from T0547.t04.many.frag # found chain 2bh1A in template set T0547 188 :SAGVGIWAK 2bh1A 13 :KEADIPWLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=62409 # 1ztpA.188.164 read from T0547.t04.many.frag # found chain 1ztpA in template set Warning: unaligning (T0547)G192 (1ztpA)R169 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :SAGV 1ztpA 165 :KEGG T0547 193 :IWAK 1ztpA 170 :QVIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=62411 # 1wv8A.188.11 read from T0547.t04.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)G190 (1wv8A)A14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1wv8A)G15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1wv8A)V16 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1wv8A)A19 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SA 1wv8A 12 :GE T0547 193 :IW 1wv8A 17 :WV T0547 196 :K 1wv8A 20 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=62414 # 1u9tA.188.128 read from T0547.t04.many.frag # found chain 1u9tA in template set T0547 188 :SAGVGIWAK 1u9tA 117 :ARGERQSIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=62415 # 1h7sA.188.207 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G190 (1h7sA)K210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SA 1h7sA 208 :QG T0547 191 :V 1h7sA 211 :R T0547 193 :IWAK 1h7sA 213 :PVVC Number of specific fragments extracted= 3 number of extra gaps= 2 total=62418 # 1jx4A.188.36 read from T0547.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)S188 (1jx4A)F37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1jx4A)T45 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :AGVGIWA 1jx4A 38 :EDSGAVA Number of specific fragments extracted= 1 number of extra gaps= 2 total=62419 # 1lfdA.188.12 read from T0547.t04.many.frag # found chain 1lfdA in template set T0547 188 :SAGVGIWAK 1lfdA 26 :DNGNMYKSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=62420 # 1ogdA.188.117 read from T0547.t04.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)G192 (1ogdA)N122 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :SAGV 1ogdA 118 :TPYA T0547 193 :IWAK 1ogdA 123 :CILQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=62422 # 1h16A.188.549 read from T0547.t04.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)A189 (1h16A)D551 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1h16A)A554 because N (gamma') conformation "forbidden" or filtered. T0547 188 :S 1h16A 550 :E T0547 190 :GV 1h16A 552 :GL T0547 193 :IWAK 1h16A 555 :IDFE Number of specific fragments extracted= 3 number of extra gaps= 2 total=62425 # 1wwhA.188.56 read from T0547.t04.many.frag # found chain 1wwhA in template set Warning: unaligning (T0547)G192 (1wwhA)W209 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SAGV 1wwhA 205 :NTGN T0547 193 :IWAK 1wwhA 210 :MHIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=62427 # 1t62A.188.77 read from T0547.t04.many.frag # found chain 1t62A in template set T0547 188 :SAGVGIWAK 1t62A 1078 :QSQPLAIIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=62428 # 1h7sA.188.127 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)K196 (1h7sA)M136 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :SAGVGIWA 1h7sA 128 :SAKVGTRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=62429 # 1ryaA.188.27 read from T0547.t04.many.frag # found chain 1ryaA in training set T0547 188 :SAGVGIWAK 1ryaA 28 :SRGEFLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=62430 # 1o9wA.188.87 read from T0547.t04.many.frag # found chain 1o9wA in template set T0547 188 :SAGVGIWAK 1o9wA 88 :DTKYSRGTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=62431 # 1mpxA.188.33 read from T0547.t04.many.frag # found chain 1mpxA in template set Warning: unaligning (T0547)A189 (1mpxA)G57 because T (delta_L) conformation "forbidden" or filtered. T0547 188 :S 1mpxA 56 :D T0547 190 :GVGIWAK 1mpxA 58 :VKLHTVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=62433 1fjgP expands to /projects/compbio/data/pdb/1fjg.pdb.gz 1fjgP:# 1fjgP.188.11 read from T0547.t04.many.frag # adding 1fjgP to template set # found chain 1fjgP in template set Warning: unaligning (T0547)A189 (1fjgP)H13 because T (delta_L) conformation "forbidden" or filtered. T0547 188 :S 1fjgP 12 :K T0547 190 :GVGIWAK 1fjgP 14 :NPHYRIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=62435 # 1ru4A.188.62 read from T0547.t04.many.frag # found chain 1ru4A in training set Warning: unaligning (T0547)A195 (1ru4A)I95 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :SAGVGIW 1ru4A 88 :TQGKGNT T0547 196 :K 1ru4A 96 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=62437 # 2bryA.188.196 read from T0547.t04.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)S188 (2bryA)R189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (2bryA)Q197 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :AGVGIWA 2bryA 190 :KGSGWRA Number of specific fragments extracted= 1 number of extra gaps= 2 total=62438 # 1oi0A.188.101 read from T0547.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)K196 (1oi0A)N110 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SAGVGIWA 1oi0A 102 :DENSWKCY Number of specific fragments extracted= 1 number of extra gaps= 1 total=62439 # 1w0nA.188.66 read from T0547.t04.many.frag # found chain 1w0nA in training set T0547 188 :SAGVGIWAK 1w0nA 67 :NAGTAKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=62440 # 1p35A.188.20 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)S188 (1p35A)D22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1p35A)Y30 because E (beta_S) conformation "forbidden" or filtered. T0547 189 :AGVGIWA 1p35A 23 :KQTRELV Number of specific fragments extracted= 1 number of extra gaps= 2 total=62441 # 2alaA.188.138 read from T0547.t04.many.frag # found chain 2alaA in template set Warning: unaligning (T0547)G192 (2alaA)T143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (2alaA)V146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (2alaA)Y147 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SAGV 2alaA 139 :NVNQ T0547 193 :IW 2alaA 144 :VD Number of specific fragments extracted= 2 number of extra gaps= 2 total=62443 # 1lugA.188.70 read from T0547.t04.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)G190 (1lugA)Q74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE in next template residue (1lugA)A77 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE at template residue (1lugA)A77 T0547 188 :SA 1lugA 72 :DS T0547 191 :V 1lugA 75 :D T0547 194 :WAK 1lugA 78 :VLK Number of specific fragments extracted= 3 number of extra gaps= 2 total=62446 # 1x99A.188.74 read from T0547.t04.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)S188 (1x99A)N75 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1x99A)Y76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1x99A)K77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1x99A)D81 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :VGI 1x99A 78 :RWC T0547 195 :AK 1x99A 82 :VV Number of specific fragments extracted= 2 number of extra gaps= 2 total=62448 # 1ae9A.188.58 read from T0547.t04.many.frag # found chain 1ae9A in template set Warning: unaligning (T0547)G192 (1ae9A)K239 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :SAGV 1ae9A 235 :KTGV T0547 193 :IWAK 1ae9A 240 :IAIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=62450 # 1lml.188.120 read from T0547.t04.many.frag # found chain 1lml in template set Warning: unaligning (T0547)A189 (1lml)E221 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1lml)A227 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1lml)T228 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :S 1lml 220 :E T0547 190 :GVGIW 1lml 222 :GVLAW Number of specific fragments extracted= 2 number of extra gaps= 2 total=62452 # 1ne9A.188.48 read from T0547.t04.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)G192 (1ne9A)I53 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SAGV 1ne9A 49 :DQGA T0547 193 :IWAK 1ne9A 54 :IAAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=62454 # 1dabA.188.524 read from T0547.t04.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)V191 (1dabA)G528 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1dabA)G534 T0547 188 :SAG 1dabA 525 :NGN T0547 192 :GIWA 1dabA 529 :QWSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=62456 # 1hqz1.189.39 read from T0547.t04.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)G192 (1hqz1)Y43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (1hqz1)E44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :AGV 1hqz1 40 :KKE T0547 194 :WA 1hqz1 45 :PE T0547 197 :S 1hqz1 48 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=62459 # 1q3iA.189.114 read from T0547.t04.many.frag # found chain 1q3iA in template set Warning: unaligning (T0547)S197 (1q3iA)K501 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :AGVGIWAK 1q3iA 493 :PQSHVLVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=62460 # 1h7sA.189.208 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G190 (1h7sA)K210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :A 1h7sA 209 :G T0547 191 :V 1h7sA 211 :R T0547 193 :IWAKS 1h7sA 213 :PVVCT Number of specific fragments extracted= 3 number of extra gaps= 2 total=62463 # 2bh1A.189.13 read from T0547.t04.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)G190 (2bh1A)A15 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :A 2bh1A 14 :E T0547 191 :VGIWAKS 2bh1A 16 :DIPWLVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=62465 # 1h16A.189.550 read from T0547.t04.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)I193 (1h16A)I555 because G (3-10) conformation "forbidden" or filtered. T0547 189 :AGVG 1h16A 551 :DGLA T0547 194 :WAKS 1h16A 556 :DFEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=62467 # 1jx4A.189.37 read from T0547.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)K196 (1jx4A)T45 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :AGVGIWA 1jx4A 38 :EDSGAVA T0547 197 :S 1jx4A 46 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=62469 # 1h7sA.189.128 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)A195 (1h7sA)L135 because E (beta_S) conformation "forbidden" or filtered. T0547 189 :AGVGIW 1h7sA 129 :AKVGTR T0547 196 :KS 1h7sA 136 :MF Number of specific fragments extracted= 2 number of extra gaps= 1 total=62471 # 1ztpA.189.165 read from T0547.t04.many.frag # found chain 1ztpA in template set Warning: unaligning (T0547)V191 (1ztpA)G168 because S (epsilon) conformation "forbidden" or filtered. T0547 189 :AG 1ztpA 166 :EG T0547 192 :GIWAKS 1ztpA 169 :RQVICV Number of specific fragments extracted= 2 number of extra gaps= 1 total=62473 # 1ogdA.189.118 read from T0547.t04.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)G192 (1ogdA)N122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1ogdA)Q126 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :AGV 1ogdA 119 :PYA T0547 193 :IWA 1ogdA 123 :CIL T0547 197 :S 1ogdA 127 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=62476 # 2bryA.189.197 read from T0547.t04.many.frag # found chain 2bryA in training set T0547 189 :AGVGIWAKS 2bryA 190 :KGSGWRAQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=62477 # 1o9wA.189.88 read from T0547.t04.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)I193 (1o9wA)R93 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1o9wA)M97 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :AGVG 1o9wA 89 :TKYS T0547 194 :WAK 1o9wA 94 :GTA Number of specific fragments extracted= 2 number of extra gaps= 2 total=62479 # 1wwhA.189.57 read from T0547.t04.many.frag # found chain 1wwhA in template set T0547 189 :AGVGIWAKS 1wwhA 206 :TGNWMHIRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=62480 # 2bg5A.189.89 read from T0547.t04.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)K196 (2bg5A)D346 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (2bg5A)M347 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :AGVGIWA 2bg5A 339 :DKELPYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=62481 # 1oi0A.189.102 read from T0547.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)G190 (1oi0A)N104 because G (3-10) conformation "forbidden" or filtered. T0547 189 :A 1oi0A 103 :E T0547 191 :VGIWAKS 1oi0A 105 :SWKCYNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=62483 # 1lm5A.189.188 read from T0547.t04.many.frag # found chain 1lm5A in training set Warning: unaligning (T0547)V191 (1lm5A)G2799 because T (delta_L) conformation "forbidden" or filtered. T0547 189 :AG 1lm5A 2797 :IT T0547 192 :GIWAKS 1lm5A 2800 :LRLLEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=62485 # 1ru4A.189.63 read from T0547.t04.many.frag # found chain 1ru4A in training set Warning: unaligning (T0547)G192 (1ru4A)G92 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1ru4A)I95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1ru4A)T96 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :AGV 1ru4A 89 :QGK T0547 193 :IW 1ru4A 93 :NT T0547 197 :S 1ru4A 97 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=62488 # 1u9tA.189.129 read from T0547.t04.many.frag # found chain 1u9tA in template set Warning: unaligning (T0547)G192 (1u9tA)R121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1u9tA)S123 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :AGV 1u9tA 118 :RGE T0547 193 :I 1u9tA 122 :Q T0547 195 :AKS 1u9tA 124 :IQF Number of specific fragments extracted= 3 number of extra gaps= 2 total=62491 # 1wv8A.189.12 read from T0547.t04.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)G190 (1wv8A)A14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1wv8A)G15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1wv8A)V16 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :A 1wv8A 13 :E T0547 193 :IWAKS 1wv8A 17 :WVAES Number of specific fragments extracted= 2 number of extra gaps= 1 total=62493 # 1t62A.189.78 read from T0547.t04.many.frag # found chain 1t62A in template set Warning: unaligning (T0547)A189 (1t62A)S1079 because L (left) conformation "forbidden" or filtered. T0547 190 :GVGIWAKS 1t62A 1080 :QPLAIIRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=62494 # 1lfdA.189.13 read from T0547.t04.many.frag # found chain 1lfdA in template set Warning: unaligning (T0547)A189 (1lfdA)N27 because G (3-10) conformation "forbidden" or filtered. T0547 190 :GVGIWAKS 1lfdA 28 :GNMYKSIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=62495 # 1wleA.189.165 read from T0547.t04.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)K196 (1wleA)H173 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :AGVGIWA 1wleA 166 :ESQARVL T0547 197 :S 1wleA 174 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=62497 # 1lugA.189.71 read from T0547.t04.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE in next template residue (1lugA)A77 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE at template residue (1lugA)A77 Warning: unaligning (T0547)K196 (1lugA)K80 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :AGV 1lugA 73 :SQD T0547 194 :WA 1lugA 78 :VL T0547 197 :S 1lugA 81 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=62500 # 1xzwA.189.108 read from T0547.t04.many.frag # found chain 1xzwA in template set Warning: unaligning (T0547)G192 (1xzwA)Q112 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1xzwA)F115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1xzwA)V116 because E (beta_S) conformation "forbidden" or filtered. T0547 189 :AGV 1xzwA 109 :AKR T0547 193 :IW 1xzwA 113 :FW T0547 197 :S 1xzwA 117 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=62503 # 1zkoA.189.105 read from T0547.t04.many.frag # found chain 1zkoA in training set T0547 189 :AGVGIWAKS 1zkoA 94 :EGWLFKMEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=62504 # 1mpxA.189.34 read from T0547.t04.many.frag # found chain 1mpxA in template set T0547 189 :AGVGIWAKS 1mpxA 57 :GVKLHTVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=62505 # 1x99A.189.75 read from T0547.t04.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)A189 (1x99A)Y76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1x99A)K77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1x99A)D81 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :VGI 1x99A 78 :RWC T0547 195 :AKS 1x99A 82 :VVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=62507 # 1lml.189.121 read from T0547.t04.many.frag # found chain 1lml in template set Warning: unaligning (T0547)I193 (1lml)A225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1lml)A227 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :AGVG 1lml 221 :EGVL T0547 194 :W 1lml 226 :W T0547 196 :KS 1lml 228 :TT Number of specific fragments extracted= 3 number of extra gaps= 2 total=62510 # 1opd.189.56 read from T0547.t04.many.frag # found chain 1opd in training set T0547 189 :AGVGIWAKS 1opd 57 :QGTVVTISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=62511 # 1tyjA.189.122 read from T0547.t04.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)G190 (1tyjA)E125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1tyjA)T131 because E (beta_S) conformation "forbidden" or filtered. T0547 189 :A 1tyjA 124 :A T0547 191 :VGIWA 1tyjA 126 :GIKLA T0547 197 :S 1tyjA 132 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=62514 # 2alaA.189.139 read from T0547.t04.many.frag # found chain 2alaA in template set Warning: unaligning (T0547)K196 (2alaA)Y147 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :AGVGIWA 2alaA 140 :VNQTVDV T0547 197 :S 2alaA 148 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=62516 # 1hqz1.190.40 read from T0547.t04.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)K196 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1hqz1)G49 because Y (epsilon') conformation "forbidden" or filtered. T0547 190 :GVGIWA 1hqz1 41 :KEYEPE T0547 197 :S 1hqz1 48 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=62518 # 1h7sA.190.209 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G190 (1h7sA)K210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :V 1h7sA 211 :R T0547 193 :IW 1h7sA 213 :PV T0547 196 :KSG 1h7sA 216 :CTG Number of specific fragments extracted= 3 number of extra gaps= 3 total=62521 # 1h16A.190.551 read from T0547.t04.many.frag # found chain 1h16A in training set T0547 190 :GVGIWAKSG 1h16A 552 :GLAIDFEIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=62522 # 1q3iA.190.115 read from T0547.t04.many.frag # found chain 1q3iA in template set Warning: unaligning (T0547)S197 (1q3iA)K501 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1q3iA)G502 because Y (epsilon') conformation "forbidden" or filtered. T0547 190 :GVGIWAK 1q3iA 494 :QSHVLVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=62523 # 2bg5A.190.90 read from T0547.t04.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)K196 (2bg5A)D346 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (2bg5A)P348 because P (beta_P) conformation "forbidden" or filtered. T0547 190 :GVGIWA 2bg5A 340 :KELPYL T0547 197 :S 2bg5A 347 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=62525 # 2bh1A.190.14 read from T0547.t04.many.frag # found chain 2bh1A in template set T0547 190 :GVGIWAKSG 2bh1A 15 :ADIPWLVWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=62526 # 1jx4A.190.38 read from T0547.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)W194 (1jx4A)V43 because P (beta_P) conformation "forbidden" or filtered. T0547 190 :GVGI 1jx4A 39 :DSGA T0547 195 :AKSG 1jx4A 44 :ATAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=62528 # 2bryA.190.198 read from T0547.t04.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)G198 (2bryA)Q199 because E (beta_S) conformation "forbidden" or filtered. T0547 190 :GVGIWAKS 2bryA 191 :GSGWRAQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=62529 # 1o9wA.190.89 read from T0547.t04.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)G190 (1o9wA)K90 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWAKSG 1o9wA 91 :YSRGTAMS Number of specific fragments extracted= 1 number of extra gaps= 1 total=62530 # 1opd.190.57 read from T0547.t04.many.frag # found chain 1opd in training set T0547 190 :GVGIWAKSG 1opd 58 :GTVVTISAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=62531 # 1h7sA.190.129 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)K196 (1h7sA)M136 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1h7sA)D138 because P (beta_P) conformation "forbidden" or filtered. T0547 190 :GVGIWA 1h7sA 130 :KVGTRL T0547 197 :S 1h7sA 137 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=62533 # 1wleA.190.166 read from T0547.t04.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)V191 (1wleA)Q168 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1wleA)A169 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1wleA)H173 because Y (epsilon') conformation "forbidden" or filtered. T0547 190 :G 1wleA 167 :S T0547 193 :IWA 1wleA 170 :RVL T0547 197 :SG 1wleA 174 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=62536 # 1lm5A.190.189 read from T0547.t04.many.frag # found chain 1lm5A in training set Warning: unaligning (T0547)V191 (1lm5A)G2799 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1lm5A)L2800 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1lm5A)E2804 because P (beta_P) conformation "forbidden" or filtered. T0547 190 :G 1lm5A 2798 :T T0547 193 :IWA 1lm5A 2801 :RLL T0547 197 :SG 1lm5A 2805 :AA Number of specific fragments extracted= 3 number of extra gaps= 2 total=62539 # 1ogdA.190.119 read from T0547.t04.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)K196 (1ogdA)Q126 because P (beta_P) conformation "forbidden" or filtered. T0547 190 :GVGIWA 1ogdA 120 :YANCIL T0547 197 :SG 1ogdA 127 :AG Number of specific fragments extracted= 2 number of extra gaps= 1 total=62541 # 1xzwA.190.109 read from T0547.t04.many.frag # found chain 1xzwA in template set Warning: unaligning (T0547)G190 (1xzwA)K110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1xzwA)Q112 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1xzwA)F115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1xzwA)P118 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 1xzwA 111 :R T0547 193 :IW 1xzwA 113 :FW T0547 196 :KS 1xzwA 116 :VT Number of specific fragments extracted= 3 number of extra gaps= 4 total=62544 # 1oi0A.190.103 read from T0547.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)G190 (1oi0A)N104 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1oi0A)Y109 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1oi0A)K112 because G (3-10) conformation "forbidden" or filtered. T0547 191 :VGIW 1oi0A 105 :SWKC T0547 196 :KS 1oi0A 110 :NR Number of specific fragments extracted= 2 number of extra gaps= 3 total=62546 # 1j98A.190.84 read from T0547.t04.many.frag # found chain 1j98A in training set Warning: unaligning (T0547)G190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1j98A)Q85 Warning: unaligning (T0547)V191 (1j98A)T86 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1j98A)G87 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IWAKSG 1j98A 88 :YYLVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=62547 # 1x99A.190.76 read from T0547.t04.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)G192 (1x99A)W79 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1x99A)D81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1x99A)V82 because E (beta_S) conformation "forbidden" or filtered. T0547 190 :GV 1x99A 77 :KR T0547 193 :I 1x99A 80 :C T0547 196 :KSG 1x99A 83 :VTG Number of specific fragments extracted= 3 number of extra gaps= 2 total=62550 # 1igqA.190.32 read from T0547.t04.many.frag # found chain 1igqA in training set Warning: unaligning (T0547)G190 (1igqA)E329 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWAKSG 1igqA 330 :GYAWLKYE Number of specific fragments extracted= 1 number of extra gaps= 1 total=62551 # 1t62A.190.79 read from T0547.t04.many.frag # found chain 1t62A in template set Warning: unaligning (T0547)K196 (1t62A)R1086 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1t62A)T1088 because G (3-10) conformation "forbidden" or filtered. T0547 190 :GVGIWA 1t62A 1080 :QPLAII T0547 197 :S 1t62A 1087 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=62553 # 1ftrA.190.270 read from T0547.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)G190 (1ftrA)P271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1ftrA)G272 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1ftrA)S277 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1ftrA)A278 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1ftrA)G279 because E (beta_S) conformation "forbidden" or filtered. T0547 192 :GIWA 1ftrA 273 :VVKI Number of specific fragments extracted= 1 number of extra gaps= 2 total=62554 # 1h5rA.190.154 read from T0547.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0547)G192 (1h5rA)A157 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1h5rA)S159 because Y (epsilon') conformation "forbidden" or filtered. T0547 190 :GV 1h5rA 155 :GT T0547 193 :I 1h5rA 158 :I T0547 195 :AKSG 1h5rA 160 :LEEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=62557 # 1xmtA.190.34 read from T0547.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G190 (1xmtA)K35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1xmtA)M37 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :V 1xmtA 36 :V T0547 193 :IWAKSG 1xmtA 38 :DLVHTY Number of specific fragments extracted= 2 number of extra gaps= 2 total=62559 # 1lugA.190.72 read from T0547.t04.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)G190 (1lugA)Q74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 because of BadResidue code BAD_PEPTIDE in next template residue (1lugA)A77 Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE at template residue (1lugA)A77 Warning: unaligning (T0547)K196 (1lugA)K80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1lugA)G81 because S (epsilon) conformation "forbidden" or filtered. T0547 191 :V 1lugA 75 :D T0547 194 :WA 1lugA 78 :VL T0547 198 :G 1lugA 82 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=62562 # 1lml.190.122 read from T0547.t04.many.frag # found chain 1lml in template set Warning: unaligning (T0547)K196 (1lml)T228 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1lml)C230 because G (3-10) conformation "forbidden" or filtered. T0547 190 :GVGIWA 1lml 222 :GVLAWA T0547 197 :S 1lml 229 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=62564 # 2alaA.190.140 read from T0547.t04.many.frag # found chain 2alaA in template set Warning: unaligning (T0547)G190 (2alaA)N141 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (2alaA)N149 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :VGIWAKS 2alaA 142 :QTVDVYV Number of specific fragments extracted= 1 number of extra gaps= 2 total=62565 # 1zkoA.190.106 read from T0547.t04.many.frag # found chain 1zkoA in training set Warning: unaligning (T0547)A195 (1zkoA)M100 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1zkoA)S103 because G (3-10) conformation "forbidden" or filtered. T0547 190 :GVGIW 1zkoA 95 :GWLFK T0547 196 :KS 1zkoA 101 :EI Number of specific fragments extracted= 2 number of extra gaps= 2 total=62567 # 1szwA.190.241 read from T0547.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)G190 (1szwA)V220 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1szwA)A228 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWAKS 1szwA 221 :DGDALQL Number of specific fragments extracted= 1 number of extra gaps= 2 total=62568 # 1tyjA.190.123 read from T0547.t04.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)G190 (1tyjA)E125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1tyjA)G126 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1tyjA)I127 because E (beta_S) conformation "forbidden" or filtered. T0547 193 :IWAKSG 1tyjA 128 :KLATFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=62569 # 1rp4A.190.135 read from T0547.t04.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)G192 (1rp4A)A176 because P (beta_P) conformation "forbidden" or filtered. T0547 190 :GV 1rp4A 174 :KN T0547 193 :IWAKSG 1rp4A 177 :VLIDLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=62571 # 1h16A.191.552 read from T0547.t04.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)W194 (1h16A)D556 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1h16A)G561 because S (epsilon) conformation "forbidden" or filtered. T0547 191 :VGI 1h16A 553 :LAI T0547 195 :AKSG 1h16A 557 :FEIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=62573 # 1h7sA.191.210 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1h7sA)G218 because G (3-10) conformation "forbidden" or filtered. T0547 191 :VGIW 1h7sA 211 :RQPV T0547 196 :KS 1h7sA 216 :CT T0547 199 :G 1h7sA 219 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=62576 # 1hqz1.191.41 read from T0547.t04.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)K196 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :VGIWA 1hqz1 42 :EYEPE T0547 197 :SGG 1hqz1 48 :TGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=62578 # 2bg5A.191.91 read from T0547.t04.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)G192 (2bg5A)L342 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (2bg5A)D346 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (2bg5A)K349 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 2bg5A 341 :E T0547 193 :IWA 2bg5A 343 :PYL T0547 197 :SG 2bg5A 347 :MP Number of specific fragments extracted= 3 number of extra gaps= 3 total=62581 # 1jx4A.191.39 read from T0547.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)G192 (1jx4A)G41 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1jx4A)T45 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :V 1jx4A 40 :S T0547 193 :IWA 1jx4A 42 :AVA T0547 197 :SGG 1jx4A 46 :ANY Number of specific fragments extracted= 3 number of extra gaps= 2 total=62584 # 2bh1A.191.15 read from T0547.t04.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)G198 (2bh1A)S23 because N (gamma') conformation "forbidden" or filtered. T0547 191 :VGIWAKS 2bh1A 16 :DIPWLVW T0547 199 :G 2bh1A 24 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=62586 # 1xmtA.191.35 read from T0547.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G192 (1xmtA)M37 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1xmtA)V44 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :V 1xmtA 36 :V T0547 193 :IWAKSG 1xmtA 38 :DLVHTY Number of specific fragments extracted= 2 number of extra gaps= 2 total=62588 # 1opd.191.58 read from T0547.t04.many.frag # found chain 1opd in training set Warning: unaligning (T0547)G199 (1opd)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :VGIWAKSG 1opd 59 :TVVTISAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=62589 # 1q3iA.191.116 read from T0547.t04.many.frag # found chain 1q3iA in template set Warning: unaligning (T0547)K196 (1q3iA)M500 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1q3iA)K501 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :VGIWA 1q3iA 495 :SHVLV T0547 198 :GG 1q3iA 502 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=62591 # 1o9wA.191.90 read from T0547.t04.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)W194 (1o9wA)G94 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGI 1o9wA 91 :YSR T0547 195 :AKSGG 1o9wA 95 :TAMSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=62593 # 1wleA.191.167 read from T0547.t04.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)V191 (1wleA)Q168 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1wleA)A169 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1wleA)V175 because E (beta_S) conformation "forbidden" or filtered. T0547 193 :IWAKS 1wleA 170 :RVLHV T0547 199 :G 1wleA 176 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=62595 # 1x99A.191.77 read from T0547.t04.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)K196 (1x99A)V83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1x99A)L86 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWA 1x99A 78 :RWCDV T0547 197 :SG 1x99A 84 :TG Number of specific fragments extracted= 2 number of extra gaps= 2 total=62597 # 2bryA.191.199 read from T0547.t04.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)G199 (2bryA)P200 because C (cis) conformation "forbidden" or filtered. T0547 191 :VGIWAKSG 2bryA 192 :SGWRAQLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=62598 # 1lm5A.191.190 read from T0547.t04.many.frag # found chain 1lm5A in training set Warning: unaligning (T0547)V191 (1lm5A)G2799 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1lm5A)A2806 because E (beta_S) conformation "forbidden" or filtered. T0547 192 :GIWAKS 1lm5A 2800 :LRLLEA T0547 199 :G 1lm5A 2807 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=62600 # 1j98A.191.85 read from T0547.t04.many.frag # found chain 1j98A in training set Warning: unaligning (T0547)K196 (1j98A)V91 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :VGIWA 1j98A 86 :TGYYL T0547 197 :SGG 1j98A 92 :VSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=62602 # 1igqA.191.33 read from T0547.t04.many.frag # found chain 1igqA in training set Warning: unaligning (T0547)V191 (1igqA)G330 because T (delta_L) conformation "forbidden" or filtered. T0547 192 :GIWAKSGG 1igqA 331 :YAWLKYED Number of specific fragments extracted= 1 number of extra gaps= 1 total=62603 # 1xzwA.191.110 read from T0547.t04.many.frag # found chain 1xzwA in template set Warning: unaligning (T0547)G192 (1xzwA)Q112 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1xzwA)F115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1xzwA)P119 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 1xzwA 111 :R T0547 193 :IW 1xzwA 113 :FW T0547 196 :KSG 1xzwA 116 :VTP Number of specific fragments extracted= 3 number of extra gaps= 3 total=62606 # 1szwA.191.242 read from T0547.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)G198 (1szwA)A228 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWAKS 1szwA 221 :DGDALQL T0547 199 :G 1szwA 229 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=62608 # 1ogdA.191.120 read from T0547.t04.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)S197 (1ogdA)A127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1ogdA)G128 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWAK 1ogdA 121 :ANCILQ T0547 199 :G 1ogdA 129 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=62610 # 1oi0A.191.104 read from T0547.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)G192 (1oi0A)W106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1oi0A)Y109 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :V 1oi0A 105 :S T0547 193 :IW 1oi0A 107 :KC T0547 196 :KSGG 1oi0A 110 :NRKG Number of specific fragments extracted= 3 number of extra gaps= 2 total=62613 # 1h5rA.191.155 read from T0547.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0547)G192 (1h5rA)A157 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1h5rA)P164 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 1h5rA 156 :T T0547 193 :IWAKSG 1h5rA 158 :ISLEEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=62615 # 1ftrA.191.271 read from T0547.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)V191 (1ftrA)G272 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1ftrA)I276 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1ftrA)S277 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1ftrA)A278 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1ftrA)N280 because Y (epsilon') conformation "forbidden" or filtered. T0547 192 :GIW 1ftrA 273 :VVK T0547 198 :G 1ftrA 279 :G Number of specific fragments extracted= 2 number of extra gaps= 3 total=62617 # 1v58A.191.85 read from T0547.t04.many.frag # found chain 1v58A in training set Warning: unaligning (T0547)S197 (1v58A)D92 because D (zeta) conformation "forbidden" or filtered. T0547 191 :VGIWAK 1v58A 86 :QSHWLL T0547 198 :GG 1v58A 93 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=62619 # 1rp4A.191.136 read from T0547.t04.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)A195 (1rp4A)I179 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIW 1rp4A 175 :NAVL T0547 196 :KSGG 1rp4A 180 :DLTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=62621 # 1h7sA.191.130 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G192 (1h7sA)G132 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1h7sA)D138 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 1h7sA 131 :V T0547 193 :IWAKS 1h7sA 133 :TRLMF T0547 199 :G 1h7sA 139 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=62624 # 2ae0X.191.116 read from T0547.t04.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)V191 (2ae0X)Q117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (2ae0X)P125 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GIWAKSG 2ae0X 118 :YPIYRMP Number of specific fragments extracted= 1 number of extra gaps= 2 total=62625 # 1t62A.191.80 read from T0547.t04.many.frag # found chain 1t62A in template set Warning: unaligning (T0547)G198 (1t62A)T1088 because G (3-10) conformation "forbidden" or filtered. T0547 191 :VGIWAKS 1t62A 1081 :PLAIIRT T0547 199 :G 1t62A 1089 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=62627 # 1zkoA.191.107 read from T0547.t04.many.frag # found chain 1zkoA in training set Warning: unaligning (T0547)K196 (1zkoA)E101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1zkoA)S103 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1zkoA)D104 because D (zeta) conformation "forbidden" or filtered. T0547 191 :VGIWA 1zkoA 96 :WLFKM T0547 197 :S 1zkoA 102 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=62629 # 1lml.191.123 read from T0547.t04.many.frag # found chain 1lml in template set Warning: unaligning (T0547)I193 (1lml)A225 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :VG 1lml 223 :VL T0547 194 :WAKSGG 1lml 226 :WATTCQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=62631 # 2d9rA.191.64 read from T0547.t04.many.frag # found chain 2d9rA in template set Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)I69 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)I69 Warning: unaligning (T0547)S197 (2d9rA)R71 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGI 2d9rA 65 :YTG T0547 196 :K 2d9rA 70 :V T0547 198 :GG 2d9rA 72 :MG Number of specific fragments extracted= 3 number of extra gaps= 2 total=62634 # 1h16A.192.553 read from T0547.t04.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)G192 (1h16A)A554 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (1h16A)I555 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1h16A)D556 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1h16A)E560 because E (beta_S) conformation "forbidden" or filtered. T0547 195 :AKS 1h16A 557 :FEI T0547 199 :GI 1h16A 561 :GE Number of specific fragments extracted= 2 number of extra gaps= 2 total=62636 # 1h7sA.192.211 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G192 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IW 1h7sA 213 :PV T0547 196 :KSGGI 1h7sA 216 :CTGGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=62638 # 1hqz1.192.42 read from T0547.t04.many.frag # found chain 1hqz1 in template set T0547 192 :GIWAKSGGI 1hqz1 43 :YEPESTGSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=62639 # 2bg5A.192.92 read from T0547.t04.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)K196 (2bg5A)D346 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (2bg5A)P348 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (2bg5A)K349 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GIWA 2bg5A 342 :LPYL T0547 197 :S 2bg5A 347 :M T0547 200 :I 2bg5A 350 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=62642 # 1xmtA.192.36 read from T0547.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G198 (1xmtA)Y43 because E (beta_S) conformation "forbidden" or filtered. T0547 192 :GIWAKS 1xmtA 37 :MDLVHT T0547 199 :GI 1xmtA 44 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=62644 # 1szwA.192.243 read from T0547.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)S197 (1szwA)L227 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1szwA)A228 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GIWAK 1szwA 222 :GDALQ T0547 199 :GI 1szwA 229 :GR Number of specific fragments extracted= 2 number of extra gaps= 1 total=62646 # 1jx4A.192.40 read from T0547.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)G198 (1jx4A)N47 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GIWAKS 1jx4A 41 :GAVATA T0547 199 :GI 1jx4A 48 :YE Number of specific fragments extracted= 2 number of extra gaps= 1 total=62648 # 2bh1A.192.16 read from T0547.t04.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)G192 (2bh1A)I17 because E (beta_S) conformation "forbidden" or filtered. T0547 193 :IWAKSGGI 2bh1A 18 :PWLVWSAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=62649 # 1opd.192.59 read from T0547.t04.many.frag # found chain 1opd in training set Warning: unaligning (T0547)G192 (1opd)V60 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWAKSGGI 1opd 61 :VTISAEGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=62650 # 1wleA.192.168 read from T0547.t04.many.frag # found chain 1wleA in training set T0547 192 :GIWAKSGGI 1wleA 169 :ARVLHVVGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=62651 # 1v58A.192.86 read from T0547.t04.many.frag # found chain 1v58A in training set Warning: unaligning (T0547)G192 (1v58A)S87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1v58A)G93 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1v58A)K94 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWAKS 1v58A 88 :HWLLD T0547 200 :I 1v58A 95 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=62653 # 1x99A.192.78 read from T0547.t04.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)W194 (1x99A)D81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1x99A)L86 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GI 1x99A 79 :WC T0547 195 :AKSG 1x99A 82 :VVTG T0547 200 :I 1x99A 87 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=62656 # 1cfr.192.0 read from T0547.t04.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)G192 because first residue in template chain is (1cfr)M1 Warning: unaligning (T0547)G198 (1cfr)S7 because G (3-10) conformation "forbidden" or filtered. T0547 193 :IWAKS 1cfr 2 :DIISK T0547 199 :GI 1cfr 8 :GE Number of specific fragments extracted= 2 number of extra gaps= 1 total=62658 # 1q3iA.192.117 read from T0547.t04.many.frag # found chain 1q3iA in template set Warning: unaligning (T0547)W194 (1q3iA)L498 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GI 1q3iA 496 :HV T0547 195 :AKSGGI 1q3iA 499 :VMKGAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=62660 # 1igqA.192.34 read from T0547.t04.many.frag # found chain 1igqA in training set Warning: unaligning (T0547)I193 (1igqA)A332 because Y (epsilon') conformation "forbidden" or filtered. T0547 192 :G 1igqA 331 :Y T0547 194 :WAKSGGI 1igqA 333 :WLKYEDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=62662 # 1xzwA.192.111 read from T0547.t04.many.frag # found chain 1xzwA in template set Warning: unaligning (T0547)I193 (1xzwA)F113 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1xzwA)W114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1xzwA)F115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1xzwA)P118 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :G 1xzwA 112 :Q T0547 196 :KS 1xzwA 116 :VT T0547 199 :GI 1xzwA 119 :PK Number of specific fragments extracted= 3 number of extra gaps= 2 total=62665 # 1lm5A.192.191 read from T0547.t04.many.frag # found chain 1lm5A in training set T0547 192 :GIWAKSGGI 1lm5A 2800 :LRLLEAASV Number of specific fragments extracted= 1 number of extra gaps= 0 total=62666 # 1j98A.192.86 read from T0547.t04.many.frag # found chain 1j98A in training set Warning: unaligning (T0547)G192 (1j98A)G87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1j98A)L90 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1j98A)S93 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IW 1j98A 88 :YY T0547 196 :KS 1j98A 91 :VV T0547 199 :GI 1j98A 94 :GE Number of specific fragments extracted= 3 number of extra gaps= 3 total=62669 # 1ogdA.192.121 read from T0547.t04.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)K196 (1ogdA)Q126 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GIWA 1ogdA 122 :NCIL T0547 197 :SGGI 1ogdA 127 :AGVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=62671 # 1whsA.192.104 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)I193 (1whsA)G100 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1whsA)Y103 because Y (epsilon') conformation "forbidden" or filtered. T0547 192 :G 1whsA 99 :V T0547 194 :WA 1whsA 101 :FS T0547 197 :SGGI 1whsA 104 :TNTS Number of specific fragments extracted= 3 number of extra gaps= 2 total=62674 # 1o9wA.192.91 read from T0547.t04.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)K196 (1o9wA)A96 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GIWA 1o9wA 92 :SRGT T0547 197 :SGGI 1o9wA 97 :MSGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=62676 # 1rp4A.192.137 read from T0547.t04.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)G192 (1rp4A)A176 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1rp4A)A183 because G (3-10) conformation "forbidden" or filtered. T0547 193 :IWAKSG 1rp4A 177 :VLIDLT T0547 200 :I 1rp4A 184 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=62678 # 2bryA.192.200 read from T0547.t04.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)G192 (2bryA)G193 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (2bryA)P200 because C (cis) conformation "forbidden" or filtered. T0547 193 :IWAKSG 2bryA 194 :WRAQLQ T0547 200 :I 2bryA 201 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=62680 # 1h5rA.192.156 read from T0547.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0547)I193 (1h5rA)I158 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1h5rA)S159 because Y (epsilon') conformation "forbidden" or filtered. T0547 192 :G 1h5rA 157 :A T0547 195 :AKSGGI 1h5rA 160 :LEEKPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=62682 # 2d9rA.192.65 read from T0547.t04.many.frag # found chain 2d9rA in template set Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)I69 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)I69 T0547 192 :GI 2d9rA 66 :TG T0547 196 :KSGGI 2d9rA 70 :VRMGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=62684 # 1oi0A.192.105 read from T0547.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)G192 (1oi0A)W106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1oi0A)K112 because G (3-10) conformation "forbidden" or filtered. T0547 193 :IWAKS 1oi0A 107 :KCYNR T0547 199 :GI 1oi0A 113 :GE Number of specific fragments extracted= 2 number of extra gaps= 2 total=62686 # 2ae0X.192.117 read from T0547.t04.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)G198 (2ae0X)P124 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GIWAKS 2ae0X 118 :YPIYRM T0547 199 :GI 2ae0X 125 :PK Number of specific fragments extracted= 2 number of extra gaps= 1 total=62688 # 1ftrA.192.272 read from T0547.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)G192 (1ftrA)V273 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1ftrA)N280 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IWAKSG 1ftrA 274 :VKISAG T0547 200 :I 1ftrA 281 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=62690 # 1knwA.192.151 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K196 (1knwA)N156 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1knwA)T157 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1knwA)G159 because S (epsilon) conformation "forbidden" or filtered. T0547 192 :GIWA 1knwA 152 :SQKT T0547 198 :G 1knwA 158 :G T0547 200 :I 1knwA 160 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=62693 # 1k2xB.192.13 read from T0547.t04.many.frag # found chain 1k2xB in training set Warning: unaligning (T0547)G192 (1k2xB)A192 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1k2xB)T195 because E (beta_S) conformation "forbidden" or filtered. T0547 193 :IW 1k2xB 193 :AA T0547 196 :KSGGI 1k2xB 196 :STGGM Number of specific fragments extracted= 2 number of extra gaps= 2 total=62695 # 1h16A.193.554 read from T0547.t04.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)W194 (1h16A)D556 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :I 1h16A 555 :I T0547 195 :AKSGGIN 1h16A 557 :FEIEGEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=62697 # 1h7sA.193.212 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IW 1h7sA 213 :PV T0547 196 :KSGGIN 1h7sA 216 :CTGGSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=62699 # 1szwA.193.244 read from T0547.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)A195 (1szwA)L225 because E (beta_S) conformation "forbidden" or filtered. T0547 193 :IW 1szwA 223 :DA T0547 196 :KSGGIN 1szwA 226 :QLAGRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=62701 # 2bg5A.193.93 read from T0547.t04.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)K196 (2bg5A)D346 because L (left) conformation "forbidden" or filtered. T0547 193 :IWA 2bg5A 343 :PYL T0547 197 :SGGIN 2bg5A 347 :MPKEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=62703 # 1cfr.193.1 read from T0547.t04.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)G198 (1cfr)S7 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1cfr)G10 because S (epsilon) conformation "forbidden" or filtered. T0547 193 :IWAKS 1cfr 2 :DIISK T0547 199 :GI 1cfr 8 :GE Number of specific fragments extracted= 2 number of extra gaps= 2 total=62705 # 1xmtA.193.37 read from T0547.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G199 (1xmtA)V44 because E (beta_S) conformation "forbidden" or filtered. T0547 193 :IWAKSG 1xmtA 38 :DLVHTY T0547 200 :IN 1xmtA 45 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=62707 # 1hqz1.193.43 read from T0547.t04.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)K196 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IWA 1hqz1 44 :EPE T0547 197 :SGGIN 1hqz1 48 :TGSSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=62709 # 1knwA.193.152 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K196 (1knwA)N156 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IWA 1knwA 153 :QKT T0547 197 :SGGIN 1knwA 157 :TGGEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=62711 # 1opd.193.60 read from T0547.t04.many.frag # found chain 1opd in training set T0547 193 :IWAKSGGIN 1opd 61 :VTISAEGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=62712 # 1whsA.193.105 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)K196 (1whsA)Y103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1whsA)T106 because N (gamma') conformation "forbidden" or filtered. T0547 193 :IWA 1whsA 100 :GFS T0547 197 :SG 1whsA 104 :TN T0547 200 :IN 1whsA 107 :SS Number of specific fragments extracted= 3 number of extra gaps= 2 total=62715 # 1v58A.193.87 read from T0547.t04.many.frag # found chain 1v58A in training set Warning: unaligning (T0547)A195 (1v58A)L90 because E (beta_S) conformation "forbidden" or filtered. T0547 193 :IW 1v58A 88 :HW T0547 196 :KSGGIN 1v58A 91 :LDGKKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=62717 # 2bh1A.193.17 read from T0547.t04.many.frag # found chain 2bh1A in template set T0547 193 :IWAKSGGIN 2bh1A 18 :PWLVWSAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=62718 # 1x99A.193.79 read from T0547.t04.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)W194 (1x99A)D81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1x99A)L86 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :I 1x99A 80 :C T0547 195 :AKSG 1x99A 82 :VVTG T0547 200 :IN 1x99A 87 :KP Number of specific fragments extracted= 3 number of extra gaps= 2 total=62721 # 1lm5A.193.192 read from T0547.t04.many.frag # found chain 1lm5A in training set Warning: unaligning (T0547)A195 (1lm5A)L2803 because E (beta_S) conformation "forbidden" or filtered. T0547 193 :IW 1lm5A 2801 :RL T0547 196 :KSGGIN 1lm5A 2804 :EAASVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=62723 # 1xd8A.193.83 read from T0547.t04.many.frag # found chain 1xd8A in template set Warning: unaligning (T0547)A195 (1xd8A)V86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1xd8A)G89 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1xd8A)E92 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IW 1xd8A 84 :KC T0547 196 :KS 1xd8A 87 :ES T0547 199 :GI 1xd8A 90 :GP Number of specific fragments extracted= 3 number of extra gaps= 3 total=62726 # 1wleA.193.169 read from T0547.t04.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)K196 (1wleA)H173 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1wleA)V175 because E (beta_S) conformation "forbidden" or filtered. T0547 193 :IWA 1wleA 170 :RVL T0547 197 :S 1wleA 174 :V T0547 199 :GIN 1wleA 176 :GDK Number of specific fragments extracted= 3 number of extra gaps= 2 total=62729 # 1igqA.193.35 read from T0547.t04.many.frag # found chain 1igqA in training set T0547 193 :IWAKSGGIN 1igqA 332 :AWLKYEDDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62730 # 1jx4A.193.41 read from T0547.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)K196 (1jx4A)T45 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IWA 1jx4A 42 :AVA T0547 197 :SGGIN 1jx4A 46 :ANYEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=62732 # 1k2xB.193.14 read from T0547.t04.many.frag # found chain 1k2xB in training set Warning: unaligning (T0547)G198 (1k2xB)G198 because G (3-10) conformation "forbidden" or filtered. T0547 193 :IWAKS 1k2xB 193 :AATST T0547 199 :GIN 1k2xB 199 :GMT Number of specific fragments extracted= 2 number of extra gaps= 1 total=62734 # 1rp4A.193.138 read from T0547.t04.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)G199 (1rp4A)A183 because G (3-10) conformation "forbidden" or filtered. T0547 193 :IWAKSG 1rp4A 177 :VLIDLT T0547 200 :IN 1rp4A 184 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=62736 # 1ogdA.193.122 read from T0547.t04.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)N201 because last residue in template chain is (1ogdA)F131 T0547 193 :IWAKSGGI 1ogdA 123 :CILQAGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=62737 # 1o9wA.193.92 read from T0547.t04.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)W194 (1o9wA)G94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1o9wA)T95 because E (beta_S) conformation "forbidden" or filtered. T0547 193 :I 1o9wA 93 :R T0547 196 :KSGGIN 1o9wA 96 :AMSGNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=62739 # 1xzwA.193.112 read from T0547.t04.many.frag # found chain 1xzwA in template set Warning: unaligning (T0547)A195 (1xzwA)F115 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IW 1xzwA 113 :FW T0547 196 :KSGGIN 1xzwA 116 :VTPPKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=62741 # 2a1rA.193.71 read from T0547.t04.many.frag # found chain 2a1rA in template set T0547 193 :IWAKSGGIN 2a1rA 72 :CTFKYDYTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=62742 # 2alaA.193.143 read from T0547.t04.many.frag # found chain 2alaA in template set Warning: unaligning (T0547)A195 (2alaA)V146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (2alaA)H152 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IW 2alaA 144 :VD T0547 196 :KSGGI 2alaA 147 :YVNGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=62744 # 1h5rA.193.157 read from T0547.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0547)W194 (1h5rA)S159 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1h5rA)E162 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :I 1h5rA 158 :I T0547 195 :AK 1h5rA 160 :LE T0547 198 :GGIN 1h5rA 163 :KPLE Number of specific fragments extracted= 3 number of extra gaps= 2 total=62747 # 1q3iA.193.118 read from T0547.t04.many.frag # found chain 1q3iA in template set Warning: unaligning (T0547)A195 (1q3iA)V499 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1q3iA)K501 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1q3iA)A503 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IW 1q3iA 497 :VL T0547 196 :K 1q3iA 500 :M T0547 198 :G 1q3iA 502 :G T0547 200 :IN 1q3iA 504 :PE Number of specific fragments extracted= 4 number of extra gaps= 3 total=62751 # 1xzzA.193.39 read from T0547.t04.many.frag # found chain 1xzzA in training set Warning: unaligning (T0547)S197 (1xzzA)T29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1xzzA)L30 because G (3-10) conformation "forbidden" or filtered. T0547 193 :IWAK 1xzzA 25 :GFIS T0547 199 :GIN 1xzzA 31 :GLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=62753 # 1bco.193.95 read from T0547.t04.many.frag # found chain 1bco in template set T0547 193 :IWAKSGGIN 1bco 343 :NKWLTGGAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=62754 # 1j98A.193.87 read from T0547.t04.many.frag # found chain 1j98A in training set Warning: unaligning (T0547)G198 (1j98A)S93 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWAKS 1j98A 88 :YYLVV T0547 199 :GIN 1j98A 94 :GET Number of specific fragments extracted= 2 number of extra gaps= 1 total=62756 # 1h16A.194.555 read from T0547.t04.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)W194 (1h16A)D556 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1h16A)E560 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1h16A)G561 because S (epsilon) conformation "forbidden" or filtered. T0547 195 :AKS 1h16A 557 :FEI T0547 200 :INS 1h16A 562 :EYP Number of specific fragments extracted= 2 number of extra gaps= 2 total=62758 # 1h7sA.194.213 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0547 194 :W 1h7sA 214 :V T0547 196 :KSGGINS 1h7sA 216 :CTGGSPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=62760 # 1cfr.194.2 read from T0547.t04.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)G198 (1cfr)S7 because G (3-10) conformation "forbidden" or filtered. T0547 194 :WAKS 1cfr 3 :IISK T0547 199 :GINS 1cfr 8 :GEGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=62762 # 1knwA.194.153 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K196 (1knwA)N156 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1knwA)G159 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1knwA)N161 because G (3-10) conformation "forbidden" or filtered. T0547 194 :WA 1knwA 154 :KT T0547 197 :SG 1knwA 157 :TG T0547 200 :I 1knwA 160 :E T0547 202 :S 1knwA 162 :S Number of specific fragments extracted= 4 number of extra gaps= 3 total=62766 # 1szwA.194.245 read from T0547.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)I200 (1szwA)R230 because Y (epsilon') conformation "forbidden" or filtered. T0547 194 :WAKSGG 1szwA 224 :ALQLAG T0547 201 :NS 1szwA 231 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=62768 # 1whsA.194.106 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)G199 (1whsA)T106 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1whsA)I110 T0547 194 :WAKSG 1whsA 101 :FSYTN T0547 200 :IN 1whsA 107 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=62770 # 1xmtA.194.38 read from T0547.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G199 (1xmtA)V44 because E (beta_S) conformation "forbidden" or filtered. T0547 194 :WAKSG 1xmtA 39 :LVHTY T0547 200 :INS 1xmtA 45 :PSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=62772 # 2bg5A.194.94 read from T0547.t04.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)K196 (2bg5A)D346 because L (left) conformation "forbidden" or filtered. T0547 194 :WA 2bg5A 344 :YL T0547 197 :SGGINS 2bg5A 347 :MPKEMN Number of specific fragments extracted= 2 number of extra gaps= 1 total=62774 # 1opd.194.61 read from T0547.t04.many.frag # found chain 1opd in training set Warning: unaligning (T0547)K196 (1opd)S64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1opd)D69 because G (3-10) conformation "forbidden" or filtered. T0547 194 :WA 1opd 62 :TI T0547 197 :SGGI 1opd 65 :AEGE T0547 202 :S 1opd 70 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=62777 # 1xd8A.194.84 read from T0547.t04.many.frag # found chain 1xd8A in template set Warning: unaligning (T0547)N201 (1xd8A)E92 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :WAKSGGI 1xd8A 85 :CVESGGP T0547 202 :S 1xd8A 93 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=62779 # 1lm5A.194.193 read from T0547.t04.many.frag # found chain 1lm5A in training set Warning: unaligning (T0547)K196 (1lm5A)E2804 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :WA 1lm5A 2802 :LL T0547 197 :SGGINS 1lm5A 2805 :AASVSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=62781 # 1ct5A.194.140 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)S146 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)S146 T0547 194 :WAK 1ct5A 142 :QIN T0547 199 :GINS 1ct5A 147 :HEDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=62783 # 1k2xB.194.15 read from T0547.t04.many.frag # found chain 1k2xB in training set Warning: unaligning (T0547)G198 (1k2xB)G198 because G (3-10) conformation "forbidden" or filtered. T0547 194 :WAKS 1k2xB 194 :ATST T0547 199 :GINS 1k2xB 199 :GMTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=62785 # 1wdaA.194.481 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K196 (1wdaA)S477 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1wdaA)P480 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. T0547 194 :WA 1wdaA 475 :FL T0547 197 :SG 1wdaA 478 :FV T0547 200 :IN 1wdaA 481 :AP Number of specific fragments extracted= 3 number of extra gaps= 3 total=62788 # 1rp4A.194.139 read from T0547.t04.many.frag # found chain 1rp4A in template set T0547 194 :WAKSGGINS 1rp4A 178 :LIDLTANPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=62789 # 1v58A.194.88 read from T0547.t04.many.frag # found chain 1v58A in training set Warning: unaligning (T0547)G198 (1v58A)G93 because S (epsilon) conformation "forbidden" or filtered. T0547 194 :WAKS 1v58A 89 :WLLD T0547 199 :GINS 1v58A 94 :KKDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=62791 # 1z5oA.194.118 read from T0547.t04.many.frag # found chain 1z5oA in template set Warning: unaligning (T0547)A195 (1z5oA)G110 because T (delta_L) conformation "forbidden" or filtered. T0547 194 :W 1z5oA 109 :Y T0547 196 :KSGGINS 1z5oA 111 :QLPGCPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=62793 # 1tyv.194.90 read from T0547.t04.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)G198 (1tyv)W207 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1tyv)D210 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1tyv)N211 because L (left) conformation "forbidden" or filtered. T0547 194 :WAKS 1tyv 203 :VIKP T0547 199 :GI 1tyv 208 :TD Number of specific fragments extracted= 2 number of extra gaps= 2 total=62795 # 1bco.194.96 read from T0547.t04.many.frag # found chain 1bco in template set T0547 194 :WAKSGGINS 1bco 344 :KWLTGGAPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=62796 # 1x99A.194.80 read from T0547.t04.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)W194 (1x99A)D81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1x99A)V82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1x99A)L86 because P (beta_P) conformation "forbidden" or filtered. T0547 196 :KSG 1x99A 83 :VTG T0547 200 :INS 1x99A 87 :KPD Number of specific fragments extracted= 2 number of extra gaps= 2 total=62798 # 2a1rA.194.72 read from T0547.t04.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)G198 (2a1rA)D77 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (2a1rA)S81 because L (left) conformation "forbidden" or filtered. T0547 194 :WAKS 2a1rA 73 :TFKY T0547 199 :GIN 2a1rA 78 :YTD Number of specific fragments extracted= 2 number of extra gaps= 2 total=62800 # 2bh1A.194.18 read from T0547.t04.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)S202 (2bh1A)Q27 because L (left) conformation "forbidden" or filtered. T0547 194 :WAKSGGIN 2bh1A 19 :WLVWSAEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=62801 # 1wleA.194.170 read from T0547.t04.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)K196 (1wleA)H173 because Y (epsilon') conformation "forbidden" or filtered. T0547 194 :WA 1wleA 171 :VL T0547 197 :SGGINS 1wleA 174 :VVGDKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=62803 # 1wvfA.194.44 read from T0547.t04.many.frag # found chain 1wvfA in training set Warning: unaligning (T0547)G199 (1wvfA)V51 because Y (epsilon') conformation "forbidden" or filtered. T0547 194 :WAKSG 1wvfA 46 :KIMMP T0547 200 :INS 1wvfA 52 :ENA Number of specific fragments extracted= 2 number of extra gaps= 1 total=62805 # 1lyvA.194.185 read from T0547.t04.many.frag # found chain 1lyvA in training set Warning: unaligning (T0547)A195 (1lyvA)V349 because D (zeta) conformation "forbidden" or filtered. T0547 194 :W 1lyvA 348 :V T0547 196 :KSGGINS 1lyvA 350 :HVGNWPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=62807 # 1xzzA.194.40 read from T0547.t04.many.frag # found chain 1xzzA in training set Warning: unaligning (T0547)K196 (1xzzA)S28 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1xzzA)L30 because G (3-10) conformation "forbidden" or filtered. T0547 194 :WA 1xzzA 26 :FI T0547 197 :S 1xzzA 29 :T T0547 199 :GINS 1xzzA 31 :GLVD Number of specific fragments extracted= 3 number of extra gaps= 2 total=62810 # 1hqz1.194.44 read from T0547.t04.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)K196 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 194 :WA 1hqz1 45 :PE T0547 197 :SGGINS 1hqz1 48 :TGSSFH Number of specific fragments extracted= 2 number of extra gaps= 1 total=62812 # 1igqA.194.36 read from T0547.t04.many.frag # found chain 1igqA in training set T0547 194 :WAKSGGINS 1igqA 333 :WLKYEDDGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=62813 # 1lugA.194.76 read from T0547.t04.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)G199 (1lugA)P83 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1lugA)G86 because S (epsilon) conformation "forbidden" or filtered. T0547 194 :WAKSG 1lugA 78 :VLKGG T0547 200 :IN 1lugA 84 :LD Number of specific fragments extracted= 2 number of extra gaps= 2 total=62815 # 1h5rA.194.158 read from T0547.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0547)W194 (1h5rA)S159 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1h5rA)P164 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKSG 1h5rA 160 :LEEK T0547 200 :INS 1h5rA 165 :LEP Number of specific fragments extracted= 2 number of extra gaps= 2 total=62817 # 1knwA.195.154 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K196 (1knwA)N156 because Y (epsilon') conformation "forbidden" or filtered. T0547 195 :A 1knwA 155 :T T0547 197 :SGGINSK 1knwA 157 :TGGENSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=62819 # 1h16A.195.556 read from T0547.t04.many.frag # found chain 1h16A in training set T0547 195 :AKSGGINSK 1h16A 557 :FEIEGEYPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=62820 # 1cfr.195.3 read from T0547.t04.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)G198 (1cfr)S7 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1cfr)G10 because S (epsilon) conformation "forbidden" or filtered. T0547 195 :AKS 1cfr 4 :ISK T0547 199 :GI 1cfr 8 :GE T0547 202 :SK 1cfr 11 :NK Number of specific fragments extracted= 3 number of extra gaps= 2 total=62823 # 1whsA.195.107 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1whsA)I110 Warning: unaligning (T0547)K203 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1whsA)I110 T0547 195 :AKSGGIN 1whsA 102 :SYTNTSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=62824 # 1h7sA.195.214 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1h7sA)C216 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1h7sA)G218 because G (3-10) conformation "forbidden" or filtered. T0547 197 :S 1h7sA 217 :T T0547 199 :GINSK 1h7sA 219 :GSPSI Number of specific fragments extracted= 2 number of extra gaps= 2 total=62826 # 1szwA.195.246 read from T0547.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)G198 (1szwA)A228 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1szwA)R230 because Y (epsilon') conformation "forbidden" or filtered. T0547 195 :AKS 1szwA 225 :LQL T0547 199 :G 1szwA 229 :G T0547 201 :NSK 1szwA 231 :GSW Number of specific fragments extracted= 3 number of extra gaps= 2 total=62829 # 1xmtA.195.39 read from T0547.t04.many.frag # found chain 1xmtA in training set T0547 195 :AKSGGINSK 1xmtA 40 :VHTYVPSFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=62830 # 1z5oA.195.119 read from T0547.t04.many.frag # found chain 1z5oA in template set Warning: unaligning (T0547)A195 (1z5oA)G110 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1z5oA)P116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1z5oA)G118 because Y (epsilon') conformation "forbidden" or filtered. T0547 196 :KSGGI 1z5oA 111 :QLPGC T0547 202 :S 1z5oA 117 :A Number of specific fragments extracted= 2 number of extra gaps= 3 total=62832 # 1wdaA.195.482 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K196 (1wdaA)S477 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1wdaA)V479 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1wdaA)P480 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1wdaA)R484 because L (left) conformation "forbidden" or filtered. T0547 195 :A 1wdaA 476 :L T0547 197 :S 1wdaA 478 :F T0547 200 :IN 1wdaA 481 :AP Number of specific fragments extracted= 3 number of extra gaps= 3 total=62835 # 1ct5A.195.141 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)S146 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)S146 T0547 195 :AK 1ct5A 143 :IN T0547 199 :GINSK 1ct5A 147 :HEDQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=62837 # 1bco.195.97 read from T0547.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0547)G198 (1bco)G348 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKS 1bco 345 :WLT T0547 199 :GINSK 1bco 349 :GAPNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=62839 # 1tyv.195.91 read from T0547.t04.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)G198 (1tyv)W207 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1tyv)N211 because L (left) conformation "forbidden" or filtered. T0547 195 :AKS 1tyv 204 :IKP T0547 199 :GIN 1tyv 208 :TDD T0547 203 :K 1tyv 212 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=62842 # 1wvfA.195.45 read from T0547.t04.many.frag # found chain 1wvfA in training set Warning: unaligning (T0547)G198 (1wvfA)P50 because N (gamma') conformation "forbidden" or filtered. T0547 195 :AKS 1wvfA 47 :IMM T0547 199 :GINSK 1wvfA 51 :VENAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=62844 # 1xd8A.195.85 read from T0547.t04.many.frag # found chain 1xd8A in template set Warning: unaligning (T0547)N201 (1xd8A)E92 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKSGGI 1xd8A 86 :VESGGP T0547 202 :SK 1xd8A 93 :PG Number of specific fragments extracted= 2 number of extra gaps= 1 total=62846 # 1ft5A.195.62 read from T0547.t04.many.frag # found chain 1ft5A in training set Warning: unaligning (T0547)S197 (1ft5A)V65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1ft5A)D66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1ft5A)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 195 :AK 1ft5A 63 :CH T0547 199 :GI 1ft5A 67 :GF T0547 202 :SK 1ft5A 70 :QK Number of specific fragments extracted= 3 number of extra gaps= 2 total=62849 # 1lm5A.195.194 read from T0547.t04.many.frag # found chain 1lm5A in training set Warning: unaligning (T0547)K203 because last residue in template chain is (1lm5A)K2811 T0547 195 :AKSGGINS 1lm5A 2803 :LEAASVSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=62850 # 1k2xB.195.16 read from T0547.t04.many.frag # found chain 1k2xB in training set Warning: unaligning (T0547)S197 (1k2xB)T197 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1k2xB)N202 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1k2xB)K203 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AK 1k2xB 195 :TS T0547 198 :GGIN 1k2xB 198 :GGMT Number of specific fragments extracted= 2 number of extra gaps= 2 total=62852 # 1opd.195.62 read from T0547.t04.many.frag # found chain 1opd in training set Warning: unaligning (T0547)G198 (1opd)E66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1opd)D69 because G (3-10) conformation "forbidden" or filtered. T0547 195 :AKS 1opd 63 :ISA T0547 199 :GI 1opd 67 :GE T0547 202 :SK 1opd 70 :EQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=62855 # 2bg5A.195.95 read from T0547.t04.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)G199 (2bg5A)K349 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKSG 2bg5A 345 :LDMP T0547 200 :INSK 2bg5A 350 :EMNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=62857 # 1x99A.195.81 read from T0547.t04.many.frag # found chain 1x99A in training set Warning: unaligning (T0547)A195 (1x99A)V82 because E (beta_S) conformation "forbidden" or filtered. T0547 196 :KSGGINSK 1x99A 83 :VTGLKPDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=62858 # 1a5t.195.76 read from T0547.t04.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)G199 (1a5t)P81 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKSG 1a5t 77 :YTLA T0547 200 :INSK 1a5t 82 :EKGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=62860 # 1v58A.195.89 read from T0547.t04.many.frag # found chain 1v58A in training set Warning: unaligning (T0547)S202 (1v58A)A97 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKSGGIN 1v58A 90 :LLDGKKD T0547 203 :K 1v58A 98 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=62862 # 1s95A.195.183 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)K196 (1s95A)M351 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 Warning: unaligning (T0547)K203 (1s95A)E358 because E (beta_S) conformation "forbidden" or filtered. T0547 195 :A 1s95A 350 :I T0547 197 :SGG 1s95A 352 :HGG T0547 202 :S 1s95A 357 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=62865 # 1ze3D.195.48 read from T0547.t04.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)G199 (1ze3D)T53 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKSG 1ze3D 49 :VTFN T0547 200 :INSK 1ze3D 54 :GDSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=62867 # 1j8rA.195.161 read from T0547.t04.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)G199 (1j8rA)Y166 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1j8rA)G168 because T (delta_L) conformation "forbidden" or filtered. T0547 195 :AKSG 1j8rA 162 :HFAS T0547 200 :I 1j8rA 167 :L T0547 202 :SK 1j8rA 169 :AR Number of specific fragments extracted= 3 number of extra gaps= 2 total=62870 # 1lyvA.195.186 read from T0547.t04.many.frag # found chain 1lyvA in training set Warning: unaligning (T0547)G198 (1lyvA)G352 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1lyvA)N353 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1lyvA)Q357 because L (left) conformation "forbidden" or filtered. T0547 195 :AKS 1lyvA 349 :VHV T0547 200 :INS 1lyvA 354 :WPD Number of specific fragments extracted= 2 number of extra gaps= 2 total=62872 # 1s4cA.195.3 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)A195 (1s4cA)S4 because Y (epsilon') conformation "forbidden" or filtered. T0547 196 :KSGGINSK 1s4cA 5 :SLTNPNFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=62873 # 1rp4A.195.140 read from T0547.t04.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)A195 (1rp4A)I179 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1rp4A)R187 because Y (epsilon') conformation "forbidden" or filtered. T0547 196 :KSGGINS 1rp4A 180 :DLTANPE Number of specific fragments extracted= 1 number of extra gaps= 2 total=62874 # 2a1rA.195.73 read from T0547.t04.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)G198 (2a1rA)D77 because N (gamma') conformation "forbidden" or filtered. T0547 195 :AKS 2a1rA 74 :FKY T0547 199 :GINSK 2a1rA 78 :YTDSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=62876 # 1ga6A.195.61 read from T0547.t04.many.frag # found chain 1ga6A in training set T0547 195 :AKSGGINSK 1ga6A 62 :IQTGSSNGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=62877 # 1knwA.196.155 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K196 (1knwA)N156 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1knwA)N161 because G (3-10) conformation "forbidden" or filtered. T0547 197 :SGGI 1knwA 157 :TGGE T0547 202 :SKF 1knwA 162 :SKH Number of specific fragments extracted= 2 number of extra gaps= 2 total=62879 # 1h16A.196.557 read from T0547.t04.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)S202 (1h16A)P564 because P (beta_P) conformation "forbidden" or filtered. T0547 196 :KSGGIN 1h16A 558 :EIEGEY T0547 203 :KF 1h16A 565 :QF Number of specific fragments extracted= 2 number of extra gaps= 1 total=62881 # 1cfr.196.4 read from T0547.t04.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)S197 (1cfr)K6 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1cfr)G10 because S (epsilon) conformation "forbidden" or filtered. T0547 196 :K 1cfr 5 :S T0547 198 :GGI 1cfr 7 :SGE T0547 202 :SKF 1cfr 11 :NKY Number of specific fragments extracted= 3 number of extra gaps= 2 total=62884 # 1whsA.196.108 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)K196 (1whsA)Y103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1whsA)T106 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1whsA)I110 Warning: unaligning (T0547)K203 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1whsA)I110 T0547 197 :SG 1whsA 104 :TN T0547 200 :IN 1whsA 107 :SS T0547 204 :F 1whsA 111 :Y Number of specific fragments extracted= 3 number of extra gaps= 3 total=62887 # 1xmtA.196.40 read from T0547.t04.many.frag # found chain 1xmtA in training set T0547 196 :KSGGINSKF 1xmtA 41 :HTYVPSFKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=62888 # 1z5oA.196.120 read from T0547.t04.many.frag # found chain 1z5oA in template set Warning: unaligning (T0547)K196 (1z5oA)Q111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1z5oA)P116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1z5oA)G118 because Y (epsilon') conformation "forbidden" or filtered. T0547 197 :SGGI 1z5oA 112 :LPGC T0547 202 :S 1z5oA 117 :A T0547 204 :F 1z5oA 119 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=62891 # 1szwA.196.247 read from T0547.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)S197 (1szwA)L227 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1szwA)A228 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1szwA)R230 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1szwA)F234 because Y (epsilon') conformation "forbidden" or filtered. T0547 196 :K 1szwA 226 :Q T0547 199 :G 1szwA 229 :G T0547 201 :NSK 1szwA 231 :GSW Number of specific fragments extracted= 3 number of extra gaps= 3 total=62894 # 1bco.196.98 read from T0547.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0547)G198 (1bco)G348 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1bco)G349 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1bco)Y354 because G (3-10) conformation "forbidden" or filtered. T0547 196 :KS 1bco 346 :LT T0547 200 :INSK 1bco 350 :APNR Number of specific fragments extracted= 2 number of extra gaps= 2 total=62896 # 1tyv.196.92 read from T0547.t04.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)G199 (1tyv)T208 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1tyv)D210 because G (3-10) conformation "forbidden" or filtered. T0547 196 :KSG 1tyv 205 :KPW T0547 200 :I 1tyv 209 :D T0547 202 :SKF 1tyv 211 :NQW Number of specific fragments extracted= 3 number of extra gaps= 2 total=62899 # 1ft5A.196.63 read from T0547.t04.many.frag # found chain 1ft5A in training set Warning: unaligning (T0547)G198 (1ft5A)D66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1ft5A)G72 because T (delta_L) conformation "forbidden" or filtered. T0547 196 :KS 1ft5A 64 :HV T0547 199 :GINSK 1ft5A 67 :GFGQK Number of specific fragments extracted= 2 number of extra gaps= 2 total=62901 # 1wdaA.196.483 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K196 (1wdaA)S477 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1wdaA)P482 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. T0547 197 :SGGI 1wdaA 478 :FVPA T0547 203 :KF 1wdaA 484 :RK Number of specific fragments extracted= 2 number of extra gaps= 2 total=62903 # 1wvfA.196.46 read from T0547.t04.many.frag # found chain 1wvfA in training set Warning: unaligning (T0547)G198 (1wvfA)P50 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1wvfA)V51 because Y (epsilon') conformation "forbidden" or filtered. T0547 196 :KS 1wvfA 48 :MM T0547 200 :INSKF 1wvfA 52 :ENAAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=62905 # 2bg5A.196.96 read from T0547.t04.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)K196 (2bg5A)D346 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (2bg5A)N352 because D (zeta) conformation "forbidden" or filtered. T0547 197 :SGGIN 2bg5A 347 :MPKEM T0547 203 :KF 2bg5A 353 :PF Number of specific fragments extracted= 2 number of extra gaps= 2 total=62907 # 1s4cA.196.4 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)G199 (1s4cA)N8 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1s4cA)N10 because G (3-10) conformation "forbidden" or filtered. T0547 196 :KSG 1s4cA 5 :SLT T0547 200 :I 1s4cA 9 :P T0547 202 :SKF 1s4cA 11 :FKV Number of specific fragments extracted= 3 number of extra gaps= 2 total=62910 # 1ct5A.196.142 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)S146 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)S146 Warning: unaligning (T0547)N201 (1ct5A)D149 because E (beta_S) conformation "forbidden" or filtered. T0547 196 :K 1ct5A 144 :N T0547 199 :GI 1ct5A 147 :HE T0547 202 :SKF 1ct5A 150 :QKS Number of specific fragments extracted= 3 number of extra gaps= 2 total=62913 # 1j8rA.196.162 read from T0547.t04.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)G198 (1j8rA)S165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1j8rA)Y166 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1j8rA)G168 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1j8rA)R170 because E (beta_S) conformation "forbidden" or filtered. T0547 196 :KS 1j8rA 163 :FA T0547 200 :I 1j8rA 167 :L T0547 202 :S 1j8rA 169 :A T0547 204 :F 1j8rA 171 :F Number of specific fragments extracted= 4 number of extra gaps= 3 total=62917 # 1lm5A.196.195 read from T0547.t04.many.frag # found chain 1lm5A in training set Warning: unaligning (T0547)K196 (1lm5A)E2804 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 because last residue in template chain is (1lm5A)K2811 T0547 197 :SGGINS 1lm5A 2805 :AASVSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=62918 # 1h7sA.196.215 read from T0547.t04.many.frag # found chain 1h7sA in template set T0547 196 :KSGGINSKF 1h7sA 216 :CTGGSPSIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=62919 # 1qo7A.196.43 read from T0547.t04.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)G198 (1qo7A)L48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. T0547 196 :KS 1qo7A 46 :ES T0547 199 :GIN 1qo7A 49 :QAD T0547 203 :KF 1qo7A 53 :RF Number of specific fragments extracted= 3 number of extra gaps= 2 total=62922 # 1jx4A.196.44 read from T0547.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)K196 (1jx4A)T45 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1jx4A)N47 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :S 1jx4A 46 :A T0547 199 :GINSKF 1jx4A 48 :YEARKF Number of specific fragments extracted= 2 number of extra gaps= 2 total=62924 # 1pjhA.196.22 read from T0547.t04.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)G198 (1pjhA)I25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1pjhA)N26 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1pjhA)N31 because L (left) conformation "forbidden" or filtered. T0547 196 :KS 1pjhA 23 :HL T0547 200 :INSK 1pjhA 27 :PDNL Number of specific fragments extracted= 2 number of extra gaps= 2 total=62926 # 1xd8A.196.86 read from T0547.t04.many.frag # found chain 1xd8A in template set T0547 196 :KSGGINSKF 1xd8A 87 :ESGGPEPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=62927 # 1ze3D.196.49 read from T0547.t04.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)K196 (1ze3D)T50 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :SGGINSKF 1ze3D 51 :FNTGDSEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=62928 # 1s95A.196.184 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 Warning: unaligning (T0547)K203 (1s95A)E358 because E (beta_S) conformation "forbidden" or filtered. T0547 196 :KSGG 1s95A 351 :MHGG T0547 202 :S 1s95A 357 :S T0547 204 :F 1s95A 359 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=62931 # 1k2xB.196.17 read from T0547.t04.many.frag # found chain 1k2xB in training set Warning: unaligning (T0547)S197 (1k2xB)T197 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1k2xB)T201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1k2xB)N202 because L (left) conformation "forbidden" or filtered. T0547 196 :K 1k2xB 196 :S T0547 198 :GGI 1k2xB 198 :GGM T0547 203 :KF 1k2xB 203 :KL Number of specific fragments extracted= 3 number of extra gaps= 2 total=62934 # 1a5t.196.77 read from T0547.t04.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)G198 (1a5t)A80 because E (beta_S) conformation "forbidden" or filtered. T0547 196 :KS 1a5t 78 :TL T0547 199 :GINSKF 1a5t 81 :PEKGKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=62936 # 2a1rA.196.74 read from T0547.t04.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)S202 (2a1rA)S81 because L (left) conformation "forbidden" or filtered. T0547 196 :KSGGIN 2a1rA 75 :KYDYTD T0547 203 :KF 2a1rA 82 :KY Number of specific fragments extracted= 2 number of extra gaps= 1 total=62938 # 1vjzA.196.60 read from T0547.t04.many.frag # found chain 1vjzA in template set Warning: unaligning (T0547)G198 (1vjzA)S51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1vjzA)F57 because G (3-10) conformation "forbidden" or filtered. T0547 196 :KS 1vjzA 49 :LW T0547 199 :GINSK 1vjzA 52 :DRGNP Number of specific fragments extracted= 2 number of extra gaps= 2 total=62940 # 1fpoA.196.4 read from T0547.t04.many.frag # found chain 1fpoA in training set Warning: unaligning (T0547)G198 (1fpoA)F7 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1fpoA)P10 because P (beta_P) conformation "forbidden" or filtered. T0547 196 :KS 1fpoA 5 :TL T0547 199 :GI 1fpoA 8 :GL T0547 202 :SKF 1fpoA 11 :ARY Number of specific fragments extracted= 3 number of extra gaps= 2 total=62943 # 1rp4A.196.141 read from T0547.t04.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)G199 (1rp4A)A183 because G (3-10) conformation "forbidden" or filtered. T0547 196 :KSG 1rp4A 180 :DLT T0547 200 :INSKF 1rp4A 184 :NPERF Number of specific fragments extracted= 2 number of extra gaps= 1 total=62945 # 1knwA.197.156 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 197 :SGGINSKFG 1knwA 157 :TGGENSKHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62946 # 1h16A.197.558 read from T0547.t04.many.frag # found chain 1h16A in training set T0547 197 :SGGINSKFG 1h16A 559 :IEGEYPQFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62947 # 1cfr.197.5 read from T0547.t04.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)G205 (1cfr)T14 because E (beta_S) conformation "forbidden" or filtered. T0547 197 :SGGINSKF 1cfr 6 :KSGEGNKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=62948 # 1whsA.197.109 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1whsA)I110 Warning: unaligning (T0547)K203 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1whsA)I110 Warning: unaligning (T0547)F204 (1whsA)Y111 because G (3-10) conformation "forbidden" or filtered. T0547 197 :SGGIN 1whsA 104 :TNTSS T0547 205 :G 1whsA 112 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=62950 # 1xmtA.197.41 read from T0547.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G198 (1xmtA)Y43 because E (beta_S) conformation "forbidden" or filtered. T0547 197 :S 1xmtA 42 :T T0547 199 :GINSKFG 1xmtA 44 :VPSFKRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=62952 # 1z5oA.197.121 read from T0547.t04.many.frag # found chain 1z5oA in template set Warning: unaligning (T0547)G198 (1z5oA)P113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1z5oA)K120 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :S 1z5oA 112 :L T0547 199 :GINSKF 1z5oA 114 :GCPAGF Number of specific fragments extracted= 2 number of extra gaps= 2 total=62954 # 1qo7A.197.44 read from T0547.t04.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)G198 (1qo7A)L48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1qo7A)Q49 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. T0547 197 :S 1qo7A 47 :S T0547 200 :IN 1qo7A 50 :AD T0547 203 :KFG 1qo7A 53 :RFG Number of specific fragments extracted= 3 number of extra gaps= 2 total=62957 # 1ft5A.197.64 read from T0547.t04.many.frag # found chain 1ft5A in training set Warning: unaligning (T0547)S197 (1ft5A)V65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1ft5A)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1ft5A)K71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1ft5A)G72 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1ft5A)G73 because P (beta_P) conformation "forbidden" or filtered. T0547 198 :GGI 1ft5A 66 :DGF T0547 202 :S 1ft5A 70 :Q Number of specific fragments extracted= 2 number of extra gaps= 3 total=62959 # 1bco.197.99 read from T0547.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0547)G198 (1bco)G348 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :S 1bco 347 :T T0547 199 :GINSKFG 1bco 349 :GAPNRYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=62961 # 1j8rA.197.163 read from T0547.t04.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)G198 (1j8rA)S165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1j8rA)G168 because T (delta_L) conformation "forbidden" or filtered. T0547 197 :S 1j8rA 164 :A T0547 199 :GI 1j8rA 166 :YL T0547 202 :SKFG 1j8rA 169 :ARFK Number of specific fragments extracted= 3 number of extra gaps= 2 total=62964 # 1s4cA.197.5 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)G199 (1s4cA)N8 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :SG 1s4cA 6 :LT T0547 200 :INSKFG 1s4cA 9 :PNFKVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=62966 # 1gx5A.197.93 read from T0547.t04.many.frag # found chain 1gx5A in template set T0547 197 :SGGINSKFG 1gx5A 94 :PHSAKSKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=62967 # 1szwA.197.248 read from T0547.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)G198 (1szwA)A228 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1szwA)W233 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1szwA)V235 because E (beta_S) conformation "forbidden" or filtered. T0547 197 :S 1szwA 227 :L T0547 199 :GINS 1szwA 229 :GRGS T0547 204 :F 1szwA 234 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=62970 # 1tx4A.197.1 read from T0547.t04.many.frag # found chain 1tx4A in training set Warning: unaligning (T0547)G198 because first residue in template chain is (1tx4A)P39 Warning: unaligning (T0547)G199 (1tx4A)L40 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1tx4A)N42 because G (3-10) conformation "forbidden" or filtered. T0547 200 :I 1tx4A 41 :P T0547 202 :SKFG 1tx4A 43 :QQFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=62972 # 1wvfA.197.47 read from T0547.t04.many.frag # found chain 1wvfA in training set T0547 197 :SGGINSKFG 1wvfA 49 :MPVENAAHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=62973 # 1tyv.197.93 read from T0547.t04.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)G198 (1tyv)W207 because E (beta_S) conformation "forbidden" or filtered. T0547 197 :S 1tyv 206 :P T0547 199 :GINSKFG 1tyv 208 :TDDNQWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=62975 # 1ct5A.197.143 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)S146 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)S146 T0547 199 :GINSKFG 1ct5A 147 :HEDQKSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=62976 # 1jx4A.197.45 read from T0547.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)F204 (1jx4A)F53 because G (3-10) conformation "forbidden" or filtered. T0547 197 :SGGINSK 1jx4A 46 :ANYEARK T0547 205 :G 1jx4A 54 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=62978 # 2bg5A.197.97 read from T0547.t04.many.frag # found chain 2bg5A in template set Warning: unaligning (T0547)S197 (2bg5A)M347 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (2bg5A)P348 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (2bg5A)L355 because G (3-10) conformation "forbidden" or filtered. T0547 199 :GINSKF 2bg5A 349 :KEMNPF Number of specific fragments extracted= 1 number of extra gaps= 2 total=62979 # 1s95A.197.185 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 197 :SGG 1s95A 352 :HGG T0547 202 :SKFG 1s95A 357 :SEDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=62981 # 1vjzA.197.61 read from T0547.t04.many.frag # found chain 1vjzA in template set Warning: unaligning (T0547)G198 (1vjzA)S51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1vjzA)I58 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :S 1vjzA 50 :W T0547 199 :GINSKF 1vjzA 52 :DRGNPF Number of specific fragments extracted= 2 number of extra gaps= 2 total=62983 # 1lm5A.197.196 read from T0547.t04.many.frag # found chain 1lm5A in training set Warning: unaligning (T0547)K203 because last residue in template chain is (1lm5A)K2811 T0547 197 :SGGINS 1lm5A 2805 :AASVSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=62984 # 1wdaA.197.484 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G199 (1wdaA)P480 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1wdaA)K485 because T (delta_L) conformation "forbidden" or filtered. T0547 197 :SG 1wdaA 478 :FV T0547 200 :IN 1wdaA 481 :AP T0547 203 :K 1wdaA 484 :R T0547 205 :G 1wdaA 486 :G Number of specific fragments extracted= 4 number of extra gaps= 3 total=62988 # 1ycdA.197.157 read from T0547.t04.many.frag # found chain 1ycdA in training set Warning: unaligning (T0547)S197 (1ycdA)T158 because P (beta_P) conformation "forbidden" or filtered. T0547 198 :GGINSKFG 1ycdA 159 :EKFRDSFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=62989 # 1ig0A.197.149 read from T0547.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0547)G199 (1ig0A)N152 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1ig0A)Q154 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1ig0A)N156 because L (left) conformation "forbidden" or filtered. T0547 197 :SG 1ig0A 150 :KD T0547 200 :I 1ig0A 153 :L T0547 202 :S 1ig0A 155 :S T0547 204 :FG 1ig0A 157 :HG Number of specific fragments extracted= 4 number of extra gaps= 3 total=62993 # 1lvfA.197.70 read from T0547.t04.many.frag # found chain 1lvfA in template set T0547 197 :SGGINSKFG 1lvfA 71 :VEANPRKFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=62994 1t06A expands to /projects/compbio/data/pdb/1t06.pdb.gz 1t06A:# 1t06A.197.24 read from T0547.t04.many.frag # adding 1t06A to template set # found chain 1t06A in template set Warning: unaligning (T0547)N201 (1t06A)E29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1t06A)P30 because C (cis) conformation "forbidden" or filtered. T0547 197 :SGGI 1t06A 25 :NGAH T0547 203 :KFG 1t06A 31 :VFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=62996 # 1pjhA.197.23 read from T0547.t04.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)G198 (1pjhA)I25 because G (3-10) conformation "forbidden" or filtered. T0547 197 :S 1pjhA 24 :L T0547 199 :GINSKFG 1pjhA 26 :NPDNLNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=62998 # 1fpoA.197.5 read from T0547.t04.many.frag # found chain 1fpoA in training set Warning: unaligning (T0547)N201 (1fpoA)P10 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1fpoA)R12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1fpoA)Q14 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :SGGI 1fpoA 6 :LFGL T0547 202 :S 1fpoA 11 :A T0547 204 :F 1fpoA 13 :Y Number of specific fragments extracted= 3 number of extra gaps= 3 total=63001 # 1ft5A.197.156 read from T0547.t04.many.frag # found chain 1ft5A in training set Warning: unaligning (T0547)N201 (1ft5A)D161 because E (beta_S) conformation "forbidden" or filtered. T0547 197 :SGGI 1ft5A 157 :TPEV T0547 202 :SKFG 1ft5A 162 :AKYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=63003 # 1knwA.198.157 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G198 (1knwA)G158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1knwA)N161 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1knwA)G165 because S (epsilon) conformation "forbidden" or filtered. T0547 199 :GI 1knwA 159 :GE T0547 202 :SKF 1knwA 162 :SKH T0547 206 :L 1knwA 166 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=63006 # 1h16A.198.559 read from T0547.t04.many.frag # found chain 1h16A in training set T0547 198 :GGINSKFGL 1h16A 560 :EGEYPQFGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63007 # 1qo7A.198.45 read from T0547.t04.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)G198 (1qo7A)L48 because G (3-10) conformation "forbidden" or filtered. T0547 199 :GINSKFGL 1qo7A 49 :QADGRFGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=63008 # 1cfr.198.6 read from T0547.t04.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)G205 (1cfr)T14 because E (beta_S) conformation "forbidden" or filtered. T0547 198 :GGINSKF 1cfr 7 :SGEGNKY T0547 206 :L 1cfr 15 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=63010 # 1whsA.198.110 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)G199 (1whsA)T106 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1whsA)I110 Warning: unaligning (T0547)K203 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1whsA)I110 T0547 198 :G 1whsA 105 :N T0547 200 :IN 1whsA 107 :SS T0547 204 :FGL 1whsA 111 :YTS Number of specific fragments extracted= 3 number of extra gaps= 2 total=63013 # 1gx5A.198.94 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)G199 (1gx5A)S96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L206 (1gx5A)Y103 because Y (epsilon') conformation "forbidden" or filtered. T0547 198 :G 1gx5A 95 :H T0547 200 :INSKFG 1gx5A 97 :AKSKFG Number of specific fragments extracted= 2 number of extra gaps= 2 total=63015 # 1z5oA.198.122 read from T0547.t04.many.frag # found chain 1z5oA in template set Warning: unaligning (T0547)K203 (1z5oA)G118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1z5oA)K120 because P (beta_P) conformation "forbidden" or filtered. T0547 198 :GGINS 1z5oA 113 :PGCPA T0547 204 :F 1z5oA 119 :F T0547 206 :L 1z5oA 121 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=63018 # 1lwbA.198.46 read from T0547.t04.many.frag # found chain 1lwbA in training set Warning: unaligning (T0547)G198 (1lwbA)Q47 because G (3-10) conformation "forbidden" or filtered. T0547 199 :GINSKFGL 1lwbA 48 :APDNPFGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=63019 # 1xmtA.198.42 read from T0547.t04.many.frag # found chain 1xmtA in training set T0547 198 :GGINSKFGL 1xmtA 43 :YVPSFKRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63020 # 1tx4A.198.2 read from T0547.t04.many.frag # found chain 1tx4A in training set Warning: unaligning (T0547)G198 because first residue in template chain is (1tx4A)P39 Warning: unaligning (T0547)N201 (1tx4A)N42 because G (3-10) conformation "forbidden" or filtered. T0547 199 :GI 1tx4A 40 :LP T0547 202 :SKFGL 1tx4A 43 :QQFGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=63022 # 1j8rA.198.164 read from T0547.t04.many.frag # found chain 1j8rA in training set T0547 198 :GGINSKFGL 1j8rA 165 :SYLGARFKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63023 # 1ft5A.198.65 read from T0547.t04.many.frag # found chain 1ft5A in training set Warning: unaligning (T0547)G198 (1ft5A)D66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1ft5A)G72 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1ft5A)G73 because P (beta_P) conformation "forbidden" or filtered. T0547 199 :GINSK 1ft5A 67 :GFGQK T0547 206 :L 1ft5A 74 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=63025 # 1jx4A.198.46 read from T0547.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)F204 (1jx4A)F53 because G (3-10) conformation "forbidden" or filtered. T0547 198 :GGINSK 1jx4A 47 :NYEARK T0547 205 :GL 1jx4A 54 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=63027 # 1s4cA.198.6 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)G199 (1s4cA)N8 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1s4cA)N10 because G (3-10) conformation "forbidden" or filtered. T0547 198 :G 1s4cA 7 :T T0547 200 :I 1s4cA 9 :P T0547 202 :SKFGL 1s4cA 11 :FKVGL Number of specific fragments extracted= 3 number of extra gaps= 2 total=63030 # 1szwA.198.249 read from T0547.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)G198 (1szwA)A228 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1szwA)F234 because Y (epsilon') conformation "forbidden" or filtered. T0547 199 :GINSK 1szwA 229 :GRGSW T0547 205 :GL 1szwA 235 :VA Number of specific fragments extracted= 2 number of extra gaps= 2 total=63032 # 1lvfA.198.71 read from T0547.t04.many.frag # found chain 1lvfA in template set T0547 198 :GGINSKFGL 1lvfA 72 :EANPRKFNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63033 # 1vjzA.198.62 read from T0547.t04.many.frag # found chain 1vjzA in template set Warning: unaligning (T0547)G198 (1vjzA)S51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1vjzA)D52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1vjzA)N55 because D (zeta) conformation "forbidden" or filtered. T0547 200 :IN 1vjzA 53 :RG T0547 203 :KFGL 1vjzA 56 :PFII Number of specific fragments extracted= 2 number of extra gaps= 2 total=63035 # 1ig0A.198.150 read from T0547.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0547)G199 (1ig0A)N152 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1ig0A)N156 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1ig0A)H157 because L (left) conformation "forbidden" or filtered. T0547 198 :G 1ig0A 151 :D T0547 200 :INS 1ig0A 153 :LQS T0547 205 :GL 1ig0A 158 :GI Number of specific fragments extracted= 3 number of extra gaps= 2 total=63038 # 1ct5A.198.144 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)S146 Warning: unaligning (T0547)N201 (1ct5A)D149 because E (beta_S) conformation "forbidden" or filtered. T0547 199 :GI 1ct5A 147 :HE T0547 202 :SKFGL 1ct5A 150 :QKSGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=63040 # 1tyv.198.94 read from T0547.t04.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)K203 (1tyv)Q212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1tyv)L214 because P (beta_P) conformation "forbidden" or filtered. T0547 198 :GGINS 1tyv 207 :WTDDN T0547 204 :F 1tyv 213 :W T0547 206 :L 1tyv 215 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=63043 # 1bco.198.100 read from T0547.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0547)G198 (1bco)G348 because P (beta_P) conformation "forbidden" or filtered. T0547 199 :GINSKFGL 1bco 349 :GAPNRYRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=63044 # 1t06A.198.25 read from T0547.t04.many.frag # found chain 1t06A in template set Warning: unaligning (T0547)S202 (1t06A)P30 because C (cis) conformation "forbidden" or filtered. T0547 198 :GGIN 1t06A 26 :GAHE T0547 203 :KFGL 1t06A 31 :VFGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=63046 # 7odcA.198.163 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 204 :FGL 7odcA 170 :FGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63047 1vqrA expands to /projects/compbio/data/pdb/1vqr.pdb.gz 1vqrA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1584, because occupancy 0.350 <= existing 0.650 in 1vqrA Skipped atom 1586, because occupancy 0.350 <= existing 0.650 in 1vqrA Skipped atom 1588, because occupancy 0.350 <= existing 0.650 in 1vqrA Skipped atom 1590, because occupancy 0.350 <= existing 0.650 in 1vqrA # 1vqrA.198.111 read from T0547.t04.many.frag # adding 1vqrA to template set # found chain 1vqrA in template set Warning: unaligning (T0547)N201 (1vqrA)V103 because G (3-10) conformation "forbidden" or filtered. T0547 198 :GGI 1vqrA 100 :KID T0547 202 :SKFGL 1vqrA 104 :SPYGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=63049 # 1ft5A.198.157 read from T0547.t04.many.frag # found chain 1ft5A in training set Warning: unaligning (T0547)G205 (1ft5A)T165 because P (beta_P) conformation "forbidden" or filtered. T0547 198 :GGINSKF 1ft5A 158 :PEVDAKY T0547 206 :L 1ft5A 166 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=63051 # 1in0A.198.93 read from T0547.t04.many.frag # found chain 1in0A in template set Warning: unaligning (T0547)S202 (1in0A)L98 because P (beta_P) conformation "forbidden" or filtered. T0547 198 :GGIN 1in0A 94 :KEIK T0547 203 :KFGL 1in0A 99 :KQGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=63053 # 1s95A.198.186 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)G199 (1s95A)G354 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 198 :G 1s95A 353 :G T0547 202 :SKFGL 1s95A 357 :SEDGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=63055 1zhhB expands to /projects/compbio/data/pdb/1zhh.pdb.gz 1zhhB:# 1zhhB.198.90 read from T0547.t04.many.frag # adding 1zhhB to template set # found chain 1zhhB in template set Warning: unaligning (T0547)G198 (1zhhB)D127 because G (3-10) conformation "forbidden" or filtered. T0547 199 :GINSKFGL 1zhhB 128 :GNAHFYGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=63056 # 1ycdA.198.158 read from T0547.t04.many.frag # found chain 1ycdA in training set Warning: unaligning (T0547)G205 (1ycdA)A166 because P (beta_P) conformation "forbidden" or filtered. T0547 198 :GGINSKF 1ycdA 159 :EKFRDSF T0547 206 :L 1ycdA 167 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=63058 # 1ir6A.198.69 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 198 :GGINSKFGL 1ir6A 109 :HRLEEGYGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63059 # 1knwA.199.158 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G205 (1knwA)G165 because S (epsilon) conformation "forbidden" or filtered. T0547 199 :GINSKF 1knwA 159 :GENSKH T0547 206 :LT 1knwA 166 :IW Number of specific fragments extracted= 2 number of extra gaps= 1 total=63061 # 1qo7A.199.46 read from T0547.t04.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)G199 (1qo7A)Q49 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. T0547 200 :IN 1qo7A 50 :AD T0547 203 :KFGLT 1qo7A 53 :RFGIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=63063 # 1h16A.199.560 read from T0547.t04.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)T207 (1h16A)N569 because L (left) conformation "forbidden" or filtered. T0547 199 :GINSKFGL 1h16A 561 :GEYPQFGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=63064 # 1gx5A.199.95 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)G199 (1gx5A)S96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L206 (1gx5A)Y103 because Y (epsilon') conformation "forbidden" or filtered. T0547 200 :INSKFG 1gx5A 97 :AKSKFG T0547 207 :T 1gx5A 104 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=63066 # 1lwbA.199.47 read from T0547.t04.many.frag # found chain 1lwbA in training set Warning: unaligning (T0547)G199 (1lwbA)A48 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :INSKFGLT 1lwbA 49 :PDNPFGFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=63067 # 1whsA.199.111 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1whsA)I110 Warning: unaligning (T0547)K203 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1whsA)I110 T0547 199 :GIN 1whsA 106 :TSS T0547 204 :FGLT 1whsA 111 :YTSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=63069 # 1cfr.199.7 read from T0547.t04.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)S202 (1cfr)N11 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1cfr)K12 because P (beta_P) conformation "forbidden" or filtered. T0547 199 :GIN 1cfr 8 :GEG T0547 204 :FGLT 1cfr 13 :YTIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=63071 # 1tx4A.199.3 read from T0547.t04.many.frag # found chain 1tx4A in training set T0547 199 :GINSKFGLT 1tx4A 40 :LPNQQFGVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=63072 # 1z5oA.199.123 read from T0547.t04.many.frag # found chain 1z5oA in template set T0547 199 :GINSKFGLT 1z5oA 114 :GCPAGFKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63073 # 7odcA.199.164 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 204 :FGLT 7odcA 170 :FGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=63074 # 1jx4A.199.47 read from T0547.t04.many.frag # found chain 1jx4A in training set T0547 199 :GINSKFGLT 1jx4A 48 :YEARKFGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63075 # 1ir6A.199.70 read from T0547.t04.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)G205 (1ir6A)G116 because S (epsilon) conformation "forbidden" or filtered. T0547 199 :GINSKF 1ir6A 110 :RLEEGY T0547 206 :LT 1ir6A 117 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=63077 # 1vqrA.199.112 read from T0547.t04.many.frag # found chain 1vqrA in template set T0547 199 :GINSKFGLT 1vqrA 101 :IDVSPYGLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63078 # 1szwA.199.250 read from T0547.t04.many.frag # found chain 1szwA in template set T0547 199 :GINSKFGLT 1szwA 229 :GRGSWFVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=63079 # 1in0A.199.94 read from T0547.t04.many.frag # found chain 1in0A in template set Warning: unaligning (T0547)S202 (1in0A)L98 because P (beta_P) conformation "forbidden" or filtered. T0547 199 :GIN 1in0A 95 :EIK T0547 203 :KFGLT 1in0A 99 :KQGIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=63081 # 1vhuA.199.148 read from T0547.t04.many.frag # found chain 1vhuA in training set Warning: unaligning (T0547)G199 (1vhuA)V147 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :INSKFGLT 1vhuA 148 :SAGIYGCD Number of specific fragments extracted= 1 number of extra gaps= 1 total=63082 # 1xmtA.199.43 read from T0547.t04.many.frag # found chain 1xmtA in training set T0547 199 :GINSKFGLT 1xmtA 44 :VPSFKRGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=63083 # 1ft5A.199.66 read from T0547.t04.many.frag # found chain 1ft5A in training set Warning: unaligning (T0547)K203 (1ft5A)K71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1ft5A)G72 because T (delta_L) conformation "forbidden" or filtered. T0547 199 :GINS 1ft5A 67 :GFGQ T0547 205 :GLT 1ft5A 73 :GYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=63085 # 1j8rA.199.165 read from T0547.t04.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)N201 (1j8rA)G168 because T (delta_L) conformation "forbidden" or filtered. T0547 199 :GI 1j8rA 166 :YL T0547 202 :SKFGLT 1j8rA 169 :ARFKIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=63087 # 1ig0A.199.151 read from T0547.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0547)G199 (1ig0A)N152 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1ig0A)N156 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1ig0A)H157 because L (left) conformation "forbidden" or filtered. T0547 200 :INS 1ig0A 153 :LQS T0547 205 :GLT 1ig0A 158 :GIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=63089 # 1lvfA.199.72 read from T0547.t04.many.frag # found chain 1lvfA in template set T0547 199 :GINSKFGLT 1lvfA 73 :ANPRKFNLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63090 # 1zhhB.199.91 read from T0547.t04.many.frag # found chain 1zhhB in template set T0547 199 :GINSKFGLT 1zhhB 128 :GNAHFYGVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63091 # 1vjzA.199.63 read from T0547.t04.many.frag # found chain 1vjzA in template set Warning: unaligning (T0547)F204 (1vjzA)F57 because G (3-10) conformation "forbidden" or filtered. T0547 199 :GINSK 1vjzA 52 :DRGNP T0547 205 :GLT 1vjzA 58 :IIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=63093 # 1rqlA.199.205 read from T0547.t04.many.frag # found chain 1rqlA in template set T0547 199 :GINSKFGLT 1rqlA 206 :LGSSELGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=63094 # 1s95A.199.187 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 Warning: unaligning (T0547)K203 (1s95A)E358 because E (beta_S) conformation "forbidden" or filtered. T0547 199 :G 1s95A 354 :G T0547 202 :S 1s95A 357 :S T0547 204 :FGLT 1s95A 359 :DGVT Number of specific fragments extracted= 3 number of extra gaps= 2 total=63097 # 1tyv.199.95 read from T0547.t04.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)G205 (1tyv)L214 because P (beta_P) conformation "forbidden" or filtered. T0547 199 :GINSKF 1tyv 208 :TDDNQW T0547 206 :LT 1tyv 215 :TD Number of specific fragments extracted= 2 number of extra gaps= 1 total=63099 # 1t06A.199.26 read from T0547.t04.many.frag # found chain 1t06A in template set Warning: unaligning (T0547)S202 (1t06A)P30 because C (cis) conformation "forbidden" or filtered. T0547 199 :GIN 1t06A 27 :AHE T0547 203 :KFGLT 1t06A 31 :VFGVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=63101 # 1s4cA.199.7 read from T0547.t04.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)G199 (1s4cA)N8 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :INSKFGLT 1s4cA 9 :PNFKVGLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=63102 # 1xg4A.199.123 read from T0547.t04.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)S202 (1xg4A)N128 because L (left) conformation "forbidden" or filtered. T0547 199 :GIN 1xg4A 125 :HRP T0547 203 :KFGLT 1xg4A 129 :KAIVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=63104 # 1tr9A.199.127 read from T0547.t04.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)N201 (1tr9A)N129 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1tr9A)A131 because P (beta_P) conformation "forbidden" or filtered. T0547 199 :GI 1tr9A 127 :IG T0547 202 :S 1tr9A 130 :R T0547 204 :FGLT 1tr9A 132 :FGED Number of specific fragments extracted= 3 number of extra gaps= 2 total=63107 # 1knwA.200.159 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 200 :INSKFGLTS 1knwA 160 :ENSKHGIWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=63108 # 1qo7A.200.47 read from T0547.t04.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)G205 (1qo7A)G55 because S (epsilon) conformation "forbidden" or filtered. T0547 200 :INSKF 1qo7A 50 :ADGRF T0547 206 :LTS 1qo7A 56 :ITS Number of specific fragments extracted= 2 number of extra gaps= 1 total=63110 # 1h16A.200.561 read from T0547.t04.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)S202 (1h16A)P564 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1h16A)Q565 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)T207 (1h16A)N569 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S208 (1h16A)D570 because D (zeta) conformation "forbidden" or filtered. T0547 200 :IN 1h16A 562 :EY T0547 204 :FGL 1h16A 566 :FGN Number of specific fragments extracted= 2 number of extra gaps= 2 total=63112 # 7odcA.200.165 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 204 :FGLTS 7odcA 170 :FGATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63113 # 1gx5A.200.96 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L206 (1gx5A)Y103 because Y (epsilon') conformation "forbidden" or filtered. T0547 200 :INSKFG 1gx5A 97 :AKSKFG T0547 207 :TS 1gx5A 104 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=63115 # 1vhuA.200.149 read from T0547.t04.many.frag # found chain 1vhuA in training set T0547 200 :INSKFGLTS 1vhuA 148 :SAGIYGCDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63116 # 1in0A.200.95 read from T0547.t04.many.frag # found chain 1in0A in template set T0547 200 :INSKFGLTS 1in0A 96 :IKLKQGIET Number of specific fragments extracted= 1 number of extra gaps= 0 total=63117 # 1lwbA.200.48 read from T0547.t04.many.frag # found chain 1lwbA in training set Warning: unaligning (T0547)N201 (1lwbA)D50 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :I 1lwbA 49 :P T0547 202 :SKFGLTS 1lwbA 51 :NPFGFPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=63119 # 1ir6A.200.71 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 200 :INSKFGLTS 1ir6A 111 :LEEGYGVLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=63120 # 1vqrA.200.113 read from T0547.t04.many.frag # found chain 1vqrA in template set Warning: unaligning (T0547)N201 (1vqrA)V103 because G (3-10) conformation "forbidden" or filtered. T0547 200 :I 1vqrA 102 :D T0547 202 :SKFGLTS 1vqrA 104 :SPYGLNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=63122 # 1s95A.200.188 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 202 :SKFGLTS 1s95A 357 :SEDGVTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=63123 # 1cfr.200.8 read from T0547.t04.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)N201 (1cfr)G10 because S (epsilon) conformation "forbidden" or filtered. T0547 200 :I 1cfr 9 :E T0547 202 :SKFGLTS 1cfr 11 :NKYTINS Number of specific fragments extracted= 2 number of extra gaps= 1 total=63125 # 1whsA.200.112 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1whsA)I110 Warning: unaligning (T0547)K203 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1whsA)I110 Warning: unaligning (T0547)G205 (1whsA)T112 because G (3-10) conformation "forbidden" or filtered. T0547 200 :IN 1whsA 107 :SS T0547 204 :F 1whsA 111 :Y T0547 206 :LTS 1whsA 112A:SGD Number of specific fragments extracted= 3 number of extra gaps= 2 total=63128 # 1tx4A.200.4 read from T0547.t04.many.frag # found chain 1tx4A in training set T0547 200 :INSKFGLTS 1tx4A 41 :PNQQFGVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63129 # 1o82A.200.0 read from T0547.t04.many.frag # found chain 1o82A in training set Warning: unaligning (T0547)I200 because first residue in template chain is (1o82A)M1 T0547 201 :NSKFGLTS 1o82A 2 :AKEFGIPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63130 # 1rqlA.200.206 read from T0547.t04.many.frag # found chain 1rqlA in template set Warning: unaligning (T0547)I200 (1rqlA)G207 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1rqlA)S208 because P (beta_P) conformation "forbidden" or filtered. T0547 202 :SKFGLTS 1rqlA 209 :SELGLTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=63131 # 1z5oA.200.124 read from T0547.t04.many.frag # found chain 1z5oA in template set Warning: unaligning (T0547)K203 (1z5oA)G118 because Y (epsilon') conformation "forbidden" or filtered. T0547 200 :INS 1z5oA 115 :CPA T0547 204 :FGLTS 1z5oA 119 :FKADD Number of specific fragments extracted= 2 number of extra gaps= 1 total=63133 # 1ig0A.200.152 read from T0547.t04.many.frag # found chain 1ig0A in training set T0547 200 :INSKFGLTS 1ig0A 153 :LQSNHGIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63134 # 1zhhB.200.92 read from T0547.t04.many.frag # found chain 1zhhB in template set T0547 200 :INSKFGLTS 1zhhB 129 :NAHFYGVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=63135 # 1tv9A.200.99 read from T0547.t04.many.frag # found chain 1tv9A in template set T0547 200 :INSKFGLTS 1tv9A 100 :LTRVSGIGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=63136 # 1lvfA.200.73 read from T0547.t04.many.frag # found chain 1lvfA in template set T0547 200 :INSKFGLTS 1lvfA 74 :NPRKFNLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63137 # 1jkoC.200.26 read from T0547.t04.many.frag # found chain 1jkoC in template set T0547 200 :INSKFGLTS 1jkoC 165 :LAIIFGIGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63138 # 1jx4A.200.48 read from T0547.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)F204 (1jx4A)F53 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T207 (1jx4A)K56 because Y (epsilon') conformation "forbidden" or filtered. T0547 200 :INSK 1jx4A 49 :EARK T0547 205 :GL 1jx4A 54 :GV T0547 208 :S 1jx4A 57 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=63141 # 1qmeA.200.647 read from T0547.t04.many.frag # found chain 1qmeA in template set T0547 200 :INSKFGLTS 1qmeA 696 :VPDMYGWTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63142 # 1bo1A.200.105 read from T0547.t04.many.frag # found chain 1bo1A in template set T0547 200 :INSKFGLTS 1bo1A 106 :LRERFGIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63143 # 1ft5A.200.67 read from T0547.t04.many.frag # found chain 1ft5A in training set Warning: unaligning (T0547)N201 (1ft5A)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1ft5A)G72 because T (delta_L) conformation "forbidden" or filtered. T0547 200 :I 1ft5A 68 :F T0547 202 :SK 1ft5A 70 :QK T0547 205 :GLTS 1ft5A 73 :GYTI Number of specific fragments extracted= 3 number of extra gaps= 2 total=63146 # 1xg4A.200.124 read from T0547.t04.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)N201 (1xg4A)P127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1xg4A)N128 because L (left) conformation "forbidden" or filtered. T0547 200 :I 1xg4A 126 :R T0547 203 :KFGLTS 1xg4A 129 :KAIVSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=63148 # 1pjhA.200.26 read from T0547.t04.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)K203 (1pjhA)L30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1pjhA)N31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1pjhA)A32 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :INS 1pjhA 27 :PDN T0547 206 :LTS 1pjhA 33 :LEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=63150 # 1dkmA.200.128 read from T0547.t04.many.frag # found chain 1dkmA in template set Warning: unaligning (T0547)S202 (1dkmA)G131 because L (left) conformation "forbidden" or filtered. T0547 200 :IN 1dkmA 129 :KT T0547 203 :KFGLTS 1dkmA 132 :VCQLDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=63152 1yrtA expands to /projects/compbio/data/pdb/1yrt.pdb.gz 1yrtA:# 1yrtA.200.81 read from T0547.t04.many.frag # adding 1yrtA to template set # found chain 1yrtA in template set Warning: unaligning (T0547)F204 because of BadResidue code BAD_PEPTIDE in next template residue (1yrtA)G87 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE at template residue (1yrtA)G87 T0547 200 :INSK 1yrtA 82 :LSKL T0547 206 :LTS 1yrtA 88 :RAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=63154 # 1knwA.201.160 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 201 :NSKFGLTST 1knwA 161 :NSKHGIWYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=63155 # 1qo7A.201.48 read from T0547.t04.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)F204 (1qo7A)F54 because G (3-10) conformation "forbidden" or filtered. T0547 201 :NSK 1qo7A 51 :DGR T0547 205 :GLTST 1qo7A 55 :GITSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=63157 # 7odcA.201.166 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)G205 (7odcA)G171 because S (epsilon) conformation "forbidden" or filtered. T0547 204 :F 7odcA 170 :F T0547 206 :LTST 7odcA 172 :ATLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=63159 # 1vhuA.201.150 read from T0547.t04.many.frag # found chain 1vhuA in training set T0547 201 :NSKFGLTST 1vhuA 149 :AGIYGCDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63160 # 1in0A.201.96 read from T0547.t04.many.frag # found chain 1in0A in template set T0547 201 :NSKFGLTST 1in0A 97 :KLKQGIETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63161 # 1s95A.201.189 read from T0547.t04.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 202 :SKFGLTST 1s95A 357 :SEDGVTLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=63162 # 1gx5A.201.97 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L206 (1gx5A)Y103 because Y (epsilon') conformation "forbidden" or filtered. T0547 201 :NSKFG 1gx5A 98 :KSKFG T0547 207 :TST 1gx5A 104 :GAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=63164 # 1tv9A.201.100 read from T0547.t04.many.frag # found chain 1tv9A in template set T0547 201 :NSKFGLTST 1tv9A 101 :TRVSGIGPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=63165 # 1ir6A.201.72 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 201 :NSKFGLTST 1ir6A 112 :EEGYGVLME Number of specific fragments extracted= 1 number of extra gaps= 0 total=63166 # 1vqrA.201.114 read from T0547.t04.many.frag # found chain 1vqrA in template set Warning: unaligning (T0547)N201 (1vqrA)V103 because G (3-10) conformation "forbidden" or filtered. T0547 202 :SKFGLTST 1vqrA 104 :SPYGLNTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=63167 # 1h16A.201.562 read from T0547.t04.many.frag # found chain 1h16A in training set T0547 201 :NSKFGLTST 1h16A 563 :YPQFGNNDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=63168 # 1o82A.201.1 read from T0547.t04.many.frag # found chain 1o82A in training set Warning: unaligning (T0547)F204 (1o82A)F5 because G (3-10) conformation "forbidden" or filtered. T0547 201 :NSK 1o82A 2 :AKE T0547 205 :GLTST 1o82A 6 :GIPAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=63170 # 1eokA.201.209 read from T0547.t04.many.frag # found chain 1eokA in training set T0547 201 :NSKFGLTST 1eokA 210 :LQSYGANVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=63171 # 1lwbA.201.49 read from T0547.t04.many.frag # found chain 1lwbA in training set T0547 201 :NSKFGLTST 1lwbA 50 :DNPFGFPFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63172 # 1jkoC.201.27 read from T0547.t04.many.frag # found chain 1jkoC in template set T0547 201 :NSKFGLTST 1jkoC 166 :AIIFGIGVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=63173 # 1f1mA.201.107 read from T0547.t04.many.frag # found chain 1f1mA in training set Warning: unaligning (T0547)N201 (1f1mA)L145 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1f1mA)K147 because Y (epsilon') conformation "forbidden" or filtered. T0547 202 :S 1f1mA 146 :G T0547 204 :FGLTST 1f1mA 148 :EGVTDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=63175 # 1whsA.201.113 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1whsA)I110 Warning: unaligning (T0547)K203 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1whsA)I110 T0547 201 :N 1whsA 108 :S T0547 204 :FGLTST 1whsA 111 :YTSGDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=63177 # 1al3.201.178 read from T0547.t04.many.frag # found chain 1al3 in training set T0547 201 :NSKFGLTST 1al3 179 :ATKGSVSIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63178 # 1z5oA.201.125 read from T0547.t04.many.frag # found chain 1z5oA in template set Warning: unaligning (T0547)K203 (1z5oA)G118 because Y (epsilon') conformation "forbidden" or filtered. T0547 201 :NS 1z5oA 116 :PA T0547 204 :FGLTST 1z5oA 119 :FKADDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=63180 # 1rqlA.201.207 read from T0547.t04.many.frag # found chain 1rqlA in template set T0547 201 :NSKFGLTST 1rqlA 208 :SSELGLTEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63181 # 1tx4A.201.5 read from T0547.t04.many.frag # found chain 1tx4A in training set T0547 201 :NSKFGLTST 1tx4A 42 :NQQFGVSLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=63182 # 1yrtA.201.82 read from T0547.t04.many.frag # found chain 1yrtA in template set Warning: unaligning (T0547)N201 (1yrtA)S83 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 because of BadResidue code BAD_PEPTIDE in next template residue (1yrtA)G87 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE at template residue (1yrtA)G87 T0547 202 :SK 1yrtA 84 :KL T0547 206 :LTST 1yrtA 88 :RAPE Number of specific fragments extracted= 2 number of extra gaps= 2 total=63184 # 1xg4A.201.125 read from T0547.t04.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)G205 (1xg4A)I131 because E (beta_S) conformation "forbidden" or filtered. T0547 201 :NSKF 1xg4A 127 :PNKA T0547 206 :LTST 1xg4A 132 :VSKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=63186 # 1qmeA.201.648 read from T0547.t04.many.frag # found chain 1qmeA in template set Warning: unaligning (T0547)K203 (1qmeA)M699 because G (3-10) conformation "forbidden" or filtered. T0547 201 :NS 1qmeA 697 :PD T0547 204 :FGLTST 1qmeA 700 :YGWTKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=63188 # 1f74A.201.48 read from T0547.t04.many.frag # found chain 1f74A in training set Warning: unaligning (T0547)S202 (1f74A)E50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1f74A)M53 because G (3-10) conformation "forbidden" or filtered. T0547 201 :N 1f74A 49 :G T0547 203 :KF 1f74A 51 :NF T0547 206 :LTST 1f74A 54 :LSTE Number of specific fragments extracted= 3 number of extra gaps= 2 total=63191 # 1t8kA.201.28 read from T0547.t04.many.frag # found chain 1t8kA in training set T0547 201 :NSKFGLTST 1t8kA 29 :VEDLGADSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63192 # 1rv9A.201.49 read from T0547.t04.many.frag # found chain 1rv9A in training set T0547 201 :NSKFGLTST 1rv9A 50 :GTHVGDNPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63193 # 1oygA.201.253 read from T0547.t04.many.frag # found chain 1oygA in training set T0547 201 :NSKFGLTST 1oygA 280 :KAYYGKSTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=63194 1d9uA expands to /projects/compbio/data/pdb/1d9u.pdb.gz 1d9uA:# 1d9uA.201.63 read from T0547.t04.many.frag # adding 1d9uA to template set # found chain 1d9uA in template set T0547 201 :NSKFGLTST 1d9uA 64 :AGRYQLLSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63195 # 2aebA.201.246 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)F204 (2aebA)G250 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T209 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 T0547 201 :NSK 2aebA 247 :PVV T0547 205 :GLTS 2aebA 251 :GLTY Number of specific fragments extracted= 2 number of extra gaps= 2 total=63197 # 1qo7A.202.49 read from T0547.t04.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)S202 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. T0547 203 :KFGLTSTE 1qo7A 53 :RFGITSEW Number of specific fragments extracted= 1 number of extra gaps= 1 total=63198 # 7odcA.202.167 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 204 :FGLTSTE 7odcA 170 :FGATLKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=63199 # 1knwA.202.161 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)T209 (1knwA)T169 because G (3-10) conformation "forbidden" or filtered. T0547 202 :SKFGLTS 1knwA 162 :SKHGIWY T0547 210 :E 1knwA 170 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=63201 # 1s95A.202.190 read from T0547.t04.many.frag # found chain 1s95A in training set T0547 202 :SKFGLTSTE 1s95A 357 :SEDGVTLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63202 # 1in0A.202.97 read from T0547.t04.many.frag # found chain 1in0A in template set T0547 202 :SKFGLTSTE 1in0A 98 :LKQGIETEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=63203 # 1tv9A.202.101 read from T0547.t04.many.frag # found chain 1tv9A in template set T0547 202 :SKFGLTSTE 1tv9A 102 :RVSGIGPSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63204 # 1eokA.202.210 read from T0547.t04.many.frag # found chain 1eokA in training set T0547 202 :SKFGLTSTE 1eokA 211 :QSYGANVSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63205 # 1vhuA.202.151 read from T0547.t04.many.frag # found chain 1vhuA in training set T0547 202 :SKFGLTSTE 1vhuA 150 :GIYGCDLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63206 # 1f1mA.202.108 read from T0547.t04.many.frag # found chain 1f1mA in training set Warning: unaligning (T0547)G205 (1f1mA)G149 because N (gamma') conformation "forbidden" or filtered. T0547 202 :SKF 1f1mA 146 :GKE T0547 206 :LTSTE 1f1mA 150 :VTDDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=63208 # 1rv9A.202.50 read from T0547.t04.many.frag # found chain 1rv9A in training set T0547 202 :SKFGLTSTE 1rv9A 51 :THVGDNPEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63209 # 1xg4A.202.126 read from T0547.t04.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)S202 (1xg4A)N128 because L (left) conformation "forbidden" or filtered. T0547 203 :KFGLTSTE 1xg4A 129 :KAIVSKEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=63210 # 1o82A.202.2 read from T0547.t04.many.frag # found chain 1o82A in training set T0547 202 :SKFGLTSTE 1o82A 3 :KEFGIPAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63211 # 1szqA.202.184 read from T0547.t04.many.frag # found chain 1szqA in template set T0547 202 :SKFGLTSTE 1szqA 185 :EMLGLTREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63212 # 1f74A.202.49 read from T0547.t04.many.frag # found chain 1f74A in training set Warning: unaligning (T0547)S202 (1f74A)E50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1f74A)M53 because G (3-10) conformation "forbidden" or filtered. T0547 203 :KF 1f74A 51 :NF T0547 206 :LTSTE 1f74A 54 :LSTEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=63214 # 1jkoC.202.28 read from T0547.t04.many.frag # found chain 1jkoC in template set T0547 202 :SKFGLTSTE 1jkoC 167 :IIFGIGVST Number of specific fragments extracted= 1 number of extra gaps= 0 total=63215 # 1qmeA.202.649 read from T0547.t04.many.frag # found chain 1qmeA in template set T0547 202 :SKFGLTSTE 1qmeA 698 :DMYGWTKET Number of specific fragments extracted= 1 number of extra gaps= 0 total=63216 # 1z5oA.202.126 read from T0547.t04.many.frag # found chain 1z5oA in template set Warning: unaligning (T0547)G205 (1z5oA)K120 because P (beta_P) conformation "forbidden" or filtered. T0547 202 :SKF 1z5oA 117 :AGF T0547 206 :LTSTE 1z5oA 121 :ADDKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=63218 # 1oygA.202.254 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)T207 (1oygA)S286 because Y (epsilon') conformation "forbidden" or filtered. T0547 202 :SKFGL 1oygA 281 :AYYGK T0547 208 :STE 1oygA 287 :TSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=63220 # 1al3.202.179 read from T0547.t04.many.frag # found chain 1al3 in training set Warning: unaligning (T0547)F204 (1al3)G182 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1al3)S183 because E (beta_S) conformation "forbidden" or filtered. T0547 202 :SK 1al3 180 :TK T0547 206 :LTSTE 1al3 184 :VSIEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=63222 # 1ir6A.202.73 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 202 :SKFGLTSTE 1ir6A 113 :EGYGVLMER Number of specific fragments extracted= 1 number of extra gaps= 0 total=63223 # 1u24A.202.143 read from T0547.t04.many.frag # found chain 1u24A in template set T0547 202 :SKFGLTSTE 1u24A 144 :ANLGKSQHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63224 # 1ylhA.202.112 read from T0547.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)S202 (1ylhA)D93 because G (3-10) conformation "forbidden" or filtered. T0547 203 :KFGLTSTE 1ylhA 94 :NKPMTQET Number of specific fragments extracted= 1 number of extra gaps= 1 total=63225 # 2aebA.202.247 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)F204 (2aebA)G250 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T209 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0547)E210 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 T0547 202 :SK 2aebA 248 :VV T0547 205 :GLTS 2aebA 251 :GLTY Number of specific fragments extracted= 2 number of extra gaps= 2 total=63227 # 1gx5A.202.98 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L206 (1gx5A)Y103 because Y (epsilon') conformation "forbidden" or filtered. T0547 202 :SKFG 1gx5A 99 :SKFG T0547 207 :TSTE 1gx5A 104 :GAKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=63229 # 1vqrA.202.115 read from T0547.t04.many.frag # found chain 1vqrA in template set T0547 202 :SKFGLTSTE 1vqrA 104 :SPYGLNTQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63230 # 1t8kA.202.29 read from T0547.t04.many.frag # found chain 1t8kA in training set T0547 202 :SKFGLTSTE 1t8kA 30 :EDLGADSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63231 # 1lvaA.202.164 read from T0547.t04.many.frag # found chain 1lvaA in template set T0547 202 :SKFGLTSTE 1lvaA 541 :GSFNLDPSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63232 # 1yrtA.202.83 read from T0547.t04.many.frag # found chain 1yrtA in template set Warning: unaligning (T0547)F204 because of BadResidue code BAD_PEPTIDE in next template residue (1yrtA)G87 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE at template residue (1yrtA)G87 T0547 202 :SK 1yrtA 84 :KL T0547 206 :LTSTE 1yrtA 88 :RAPEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=63234 # 1h16A.202.563 read from T0547.t04.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)S202 (1h16A)P564 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T207 (1h16A)N569 because L (left) conformation "forbidden" or filtered. T0547 203 :KFGL 1h16A 565 :QFGN T0547 208 :STE 1h16A 570 :DPR Number of specific fragments extracted= 2 number of extra gaps= 2 total=63236 # 1y9iA.202.38 read from T0547.t04.many.frag # found chain 1y9iA in training set T0547 202 :SKFGLTSTE 1y9iA 39 :YHPGLELDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63237 # 7odcA.203.168 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 204 :FGLTSTEL 7odcA 170 :FGATLKTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=63238 # 1qo7A.203.50 read from T0547.t04.many.frag # found chain 1qo7A in training set T0547 203 :KFGLTSTEL 1qo7A 53 :RFGITSEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63239 # 1s95A.203.191 read from T0547.t04.many.frag # found chain 1s95A in training set T0547 203 :KFGLTSTEL 1s95A 358 :EDGVTLDDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63240 # 1knwA.203.162 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G205 (1knwA)G165 because S (epsilon) conformation "forbidden" or filtered. T0547 203 :KF 1knwA 163 :KH T0547 206 :LTSTEL 1knwA 166 :IWYTDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=63242 # 1tv9A.203.102 read from T0547.t04.many.frag # found chain 1tv9A in template set T0547 203 :KFGLTSTEL 1tv9A 103 :VSGIGPSAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63243 # 1qmeA.203.650 read from T0547.t04.many.frag # found chain 1qmeA in template set T0547 203 :KFGLTSTEL 1qmeA 699 :MYGWTKETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63244 # 1in0A.203.98 read from T0547.t04.many.frag # found chain 1in0A in template set T0547 203 :KFGLTSTEL 1in0A 99 :KQGIETEMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63245 # 1f1mA.203.109 read from T0547.t04.many.frag # found chain 1f1mA in training set T0547 203 :KFGLTSTEL 1f1mA 147 :KEGVTDDNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63246 # 1rv9A.203.51 read from T0547.t04.many.frag # found chain 1rv9A in training set T0547 203 :KFGLTSTEL 1rv9A 52 :HVGDNPEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63247 # 1xg4A.203.127 read from T0547.t04.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)K203 (1xg4A)K129 because P (beta_P) conformation "forbidden" or filtered. T0547 204 :FGLTSTEL 1xg4A 130 :AIVSKEEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=63248 # 1f74A.203.50 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 203 :KFGLTSTEL 1f74A 51 :NFMLSTEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63249 # 1jkoC.203.29 read from T0547.t04.many.frag # found chain 1jkoC in template set T0547 203 :KFGLTSTEL 1jkoC 168 :IFGIGVSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63250 # 1ofcX.203.139 read from T0547.t04.many.frag # found chain 1ofcX in template set T0547 203 :KFGLTSTEL 1ofcX 827 :VEGKTPEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63251 # 1tbxA.203.34 read from T0547.t04.many.frag # found chain 1tbxA in template set T0547 203 :KFGLTSTEL 1tbxA 35 :EFPMSTATF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63252 # 1o82A.203.3 read from T0547.t04.many.frag # found chain 1o82A in training set Warning: unaligning (T0547)F204 (1o82A)F5 because G (3-10) conformation "forbidden" or filtered. T0547 203 :K 1o82A 4 :E T0547 205 :GLTSTEL 1o82A 6 :GIPAAVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=63254 # 1xo0A.203.43 read from T0547.t04.many.frag # found chain 1xo0A in template set Warning: unaligning (T0547)G205 (1xo0A)P65 because C (cis) conformation "forbidden" or filtered. T0547 203 :KF 1xo0A 63 :WF T0547 206 :LTSTEL 1xo0A 66 :AEPEDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=63256 # 2aebA.203.248 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)F204 (2aebA)G250 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (2aebA)G251 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T209 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0547)E210 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 T0547 203 :K 2aebA 249 :V T0547 206 :LTS 2aebA 252 :LTY T0547 211 :L 2aebA 257 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=63259 # 1nkiA.203.65 read from T0547.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)G205 (1nkiA)G68 because P (beta_P) conformation "forbidden" or filtered. T0547 203 :KF 1nkiA 66 :AF T0547 206 :LTSTEL 1nkiA 69 :IAAADF Number of specific fragments extracted= 2 number of extra gaps= 1 total=63261 # 1szqA.203.185 read from T0547.t04.many.frag # found chain 1szqA in template set T0547 203 :KFGLTSTEL 1szqA 186 :MLGLTREEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63262 # 1eokA.203.211 read from T0547.t04.many.frag # found chain 1eokA in training set T0547 203 :KFGLTSTEL 1eokA 212 :SYGANVSRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=63263 # 1rcqA.203.128 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G205 (1rcqA)G131 because S (epsilon) conformation "forbidden" or filtered. T0547 203 :KF 1rcqA 129 :RV T0547 206 :LTSTEL 1rcqA 132 :FFPEDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=63265 # 1zp4A.203.182 read from T0547.t04.many.frag # found chain 1zp4A in template set T0547 203 :KFGLTSTEL 1zp4A 183 :QFFFDVESY Number of specific fragments extracted= 1 number of extra gaps= 0 total=63266 # 1t8kA.203.30 read from T0547.t04.many.frag # found chain 1t8kA in training set T0547 203 :KFGLTSTEL 1t8kA 31 :DLGADSLDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=63267 # 1lw7A.203.141 read from T0547.t04.many.frag # found chain 1lw7A in template set Warning: unaligning (T0547)F204 (1lw7A)F199 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1lw7A)N200 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)L206 (1lw7A)V201 because Y (epsilon') conformation "forbidden" or filtered. T0547 203 :K 1lw7A 198 :F T0547 207 :TSTEL 1lw7A 202 :SATKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=63269 # 1al3.203.180 read from T0547.t04.many.frag # found chain 1al3 in training set Warning: unaligning (T0547)G205 (1al3)S183 because E (beta_S) conformation "forbidden" or filtered. T0547 203 :KF 1al3 181 :KG T0547 206 :LTSTEL 1al3 184 :VSIEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=63271 # 1ir6A.203.74 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 203 :KFGLTSTEL 1ir6A 114 :GYGVLMERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63272 # 2axpA.203.76 read from T0547.t04.many.frag # found chain 2axpA in template set T0547 203 :KFGLTSTEL 2axpA 77 :YSILTERQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63273 # 1ylhA.203.113 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 203 :KFGLTSTEL 1ylhA 94 :NKPMTQETW Number of specific fragments extracted= 1 number of extra gaps= 0 total=63274 # 1lyvA.203.194 read from T0547.t04.many.frag # found chain 1lyvA in training set Warning: unaligning (T0547)G205 (1lyvA)A359 because E (beta_S) conformation "forbidden" or filtered. T0547 203 :KF 1lyvA 357 :QT T0547 206 :LTSTEL 1lyvA 360 :VSSEVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=63276 # 1px5A.203.160 read from T0547.t04.many.frag # found chain 1px5A in training set Warning: unaligning (T0547)K203 (1px5A)G161 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1px5A)K163 because P (beta_P) conformation "forbidden" or filtered. T0547 204 :F 1px5A 162 :Y T0547 206 :LTSTEL 1px5A 164 :PNPEIY Number of specific fragments extracted= 2 number of extra gaps= 2 total=63278 # 7odcA.204.169 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G205 (7odcA)G171 because S (epsilon) conformation "forbidden" or filtered. T0547 204 :F 7odcA 170 :F T0547 206 :LTSTELI 7odcA 172 :ATLKTSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=63280 # 1tv9A.204.103 read from T0547.t04.many.frag # found chain 1tv9A in template set T0547 204 :FGLTSTELI 1tv9A 104 :SGIGPSAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63281 # 1s95A.204.192 read from T0547.t04.many.frag # found chain 1s95A in training set T0547 204 :FGLTSTELI 1s95A 359 :DGVTLDDIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63282 # 1rv9A.204.52 read from T0547.t04.many.frag # found chain 1rv9A in training set T0547 204 :FGLTSTELI 1rv9A 53 :VGDNPEAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63283 # 1o82A.204.4 read from T0547.t04.many.frag # found chain 1o82A in training set T0547 204 :FGLTSTELI 1o82A 5 :FGIPAAVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=63284 # 1f74A.204.51 read from T0547.t04.many.frag # found chain 1f74A in training set Warning: unaligning (T0547)G205 (1f74A)M53 because G (3-10) conformation "forbidden" or filtered. T0547 204 :F 1f74A 52 :F T0547 206 :LTSTELI 1f74A 54 :LSTEEKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=63286 # 1rcqA.204.129 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 204 :FGLTSTELI 1rcqA 130 :VGFFPEDFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63287 # 1jkoC.204.30 read from T0547.t04.many.frag # found chain 1jkoC in template set T0547 204 :FGLTSTELI 1jkoC 169 :FGIGVSTLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=63288 # 1szqA.204.186 read from T0547.t04.many.frag # found chain 1szqA in template set T0547 204 :FGLTSTELI 1szqA 187 :LGLTREEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63289 # 1xg4A.204.128 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 204 :FGLTSTELI 1xg4A 130 :AIVSKEEMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63290 # 1zp4A.204.183 read from T0547.t04.many.frag # found chain 1zp4A in template set T0547 204 :FGLTSTELI 1zp4A 184 :FFFDVESYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63291 # 1knwA.204.163 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 204 :FGLTSTELI 1knwA 164 :HGIWYTDLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=63292 # 1qmeA.204.651 read from T0547.t04.many.frag # found chain 1qmeA in template set T0547 204 :FGLTSTELI 1qmeA 700 :YGWTKETAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63293 # 1in0A.204.99 read from T0547.t04.many.frag # found chain 1in0A in template set T0547 204 :FGLTSTELI 1in0A 100 :QGIETEMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63294 # 1f1mA.204.110 read from T0547.t04.many.frag # found chain 1f1mA in training set T0547 204 :FGLTSTELI 1f1mA 148 :EGVTDDNAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63295 # 1xo0A.204.44 read from T0547.t04.many.frag # found chain 1xo0A in template set Warning: unaligning (T0547)G205 (1xo0A)P65 because C (cis) conformation "forbidden" or filtered. T0547 204 :F 1xo0A 64 :F T0547 206 :LTSTELI 1xo0A 66 :AEPEDVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=63297 # 1qo7A.204.51 read from T0547.t04.many.frag # found chain 1qo7A in training set T0547 204 :FGLTSTELI 1qo7A 54 :FGITSEWLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=63298 # 1ofcX.204.140 read from T0547.t04.many.frag # found chain 1ofcX in template set T0547 204 :FGLTSTELI 1ofcX 828 :EGKTPEEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63299 # 1ir6A.204.75 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 204 :FGLTSTELI 1ir6A 115 :YGVLMERVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=63300 # 1nkiA.204.66 read from T0547.t04.many.frag # found chain 1nkiA in training set T0547 204 :FGLTSTELI 1nkiA 67 :FGIAAADFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63301 # 2aebA.204.249 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)F204 (2aebA)G250 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T209 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0547)E210 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 T0547 205 :GLTS 2aebA 251 :GLTY T0547 211 :LI 2aebA 257 :GL Number of specific fragments extracted= 2 number of extra gaps= 2 total=63303 # 1ujpA.204.71 read from T0547.t04.many.frag # found chain 1ujpA in training set T0547 204 :FGLTSTELI 1ujpA 72 :KGMSVQGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63304 # 1su0B.204.79 read from T0547.t04.many.frag # found chain 1su0B in template set T0547 204 :FGLTSTELI 1su0B 80 :IGKSKEEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63305 # 1nlnA.204.0 read from T0547.t04.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)G205 because first residue in template chain is (1nlnA)G2 T0547 206 :LTSTELI 1nlnA 3 :SSEQELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63306 # 1tbxA.204.35 read from T0547.t04.many.frag # found chain 1tbxA in template set Warning: unaligning (T0547)F204 (1tbxA)F36 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1tbxA)P37 because P (beta_P) conformation "forbidden" or filtered. T0547 206 :LTSTELI 1tbxA 38 :MSTATFY Number of specific fragments extracted= 1 number of extra gaps= 1 total=63307 # 1px5A.204.161 read from T0547.t04.many.frag # found chain 1px5A in training set T0547 204 :FGLTSTELI 1px5A 162 :YKPNPEIYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63308 # 1eu1A.204.296 read from T0547.t04.many.frag # found chain 1eu1A in training set T0547 204 :FGLTSTELI 1eu1A 297 :CGLPAEQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63309 # 1tfzA.204.99 read from T0547.t04.many.frag # found chain 1tfzA in training set T0547 204 :FGLTSTELI 1tfzA 100 :PSFDHGSCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63310 # 1m15A.204.137 read from T0547.t04.many.frag # found chain 1m15A in training set T0547 204 :FGLTSTELI 1m15A 138 :PCLTAEQYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63311 # 1ylhA.204.114 read from T0547.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)G205 (1ylhA)P96 because P (beta_P) conformation "forbidden" or filtered. T0547 204 :F 1ylhA 95 :K T0547 206 :LTSTELI 1ylhA 97 :MTQETWK Number of specific fragments extracted= 2 number of extra gaps= 1 total=63313 # 1eu1A.205.297 read from T0547.t04.many.frag # found chain 1eu1A in training set T0547 205 :GLTSTELIE 1eu1A 298 :GLPAEQIRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63314 # 1rcqA.205.130 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 205 :GLTSTELIE 1rcqA 131 :GFFPEDFRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63315 # 1xo0A.205.45 read from T0547.t04.many.frag # found chain 1xo0A in template set Warning: unaligning (T0547)G205 (1xo0A)P65 because C (cis) conformation "forbidden" or filtered. T0547 206 :LTSTELIE 1xo0A 66 :AEPEDVRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=63316 # 1xg4A.205.129 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 205 :GLTSTELIE 1xg4A 131 :IVSKEEMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63317 # 1f74A.205.52 read from T0547.t04.many.frag # found chain 1f74A in training set Warning: unaligning (T0547)G205 (1f74A)M53 because G (3-10) conformation "forbidden" or filtered. T0547 206 :LTSTELIE 1f74A 54 :LSTEEKKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=63318 # 1ofcX.205.141 read from T0547.t04.many.frag # found chain 1ofcX in template set T0547 205 :GLTSTELIE 1ofcX 829 :GKTPEEVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63319 # 1m15A.205.138 read from T0547.t04.many.frag # found chain 1m15A in training set T0547 205 :GLTSTELIE 1m15A 139 :CLTAEQYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63320 # 1tv9A.205.104 read from T0547.t04.many.frag # found chain 1tv9A in template set T0547 205 :GLTSTELIE 1tv9A 105 :GIGPSAARK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63321 # 1knwA.205.164 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 205 :GLTSTELIE 1knwA 165 :GIWYTDLPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63322 # 1szqA.205.187 read from T0547.t04.many.frag # found chain 1szqA in template set T0547 205 :GLTSTELIE 1szqA 188 :GLTREEILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63323 # 1qwgA.205.109 read from T0547.t04.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)G205 (1qwgA)D110 because N (gamma') conformation "forbidden" or filtered. T0547 206 :LTSTELIE 1qwgA 111 :ISLEERNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=63324 # 1zp4A.205.184 read from T0547.t04.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)G205 (1zp4A)F185 because Y (epsilon') conformation "forbidden" or filtered. T0547 206 :LTSTELIE 1zp4A 186 :FDVESYLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=63325 # 7odcA.205.170 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 205 :GLTSTELIE 7odcA 171 :GATLKTSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63326 # 1rv9A.205.53 read from T0547.t04.many.frag # found chain 1rv9A in training set T0547 205 :GLTSTELIE 1rv9A 54 :GDNPEAVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63327 # 2c5uA.205.121 read from T0547.t04.many.frag # found chain 2c5uA in template set T0547 205 :GLTSTELIE 2c5uA 121 :SIKSEQALM Number of specific fragments extracted= 1 number of extra gaps= 0 total=63328 # 1nkiA.205.67 read from T0547.t04.many.frag # found chain 1nkiA in training set T0547 205 :GLTSTELIE 1nkiA 68 :GIAAADFAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63329 # 1su0B.205.80 read from T0547.t04.many.frag # found chain 1su0B in template set T0547 205 :GLTSTELIE 1su0B 81 :GKSKEEALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63330 # 1gk9B.205.275 read from T0547.t04.many.frag # found chain 1gk9B in training set Warning: unaligning (T0547)G205 (1gk9B)R276 because E (beta_S) conformation "forbidden" or filtered. T0547 206 :LTSTELIE 1gk9B 277 :LTADQAWD Number of specific fragments extracted= 1 number of extra gaps= 1 total=63331 # 2aebA.205.250 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)T209 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0547)E210 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 T0547 205 :GLTS 2aebA 251 :GLTY T0547 211 :LIE 2aebA 257 :GLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=63333 # 1ujpA.205.72 read from T0547.t04.many.frag # found chain 1ujpA in training set T0547 205 :GLTSTELIE 1ujpA 73 :GMSVQGALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63334 # 1xccA.205.150 read from T0547.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)G205 (1xccA)G151 because P (beta_P) conformation "forbidden" or filtered. T0547 206 :LTSTELIE 1xccA 152 :RNAHEILR Number of specific fragments extracted= 1 number of extra gaps= 1 total=63335 # 1zavA.205.31 read from T0547.t04.many.frag # found chain 1zavA in template set T0547 205 :GLTSTELIE 1zavA 31 :GFTVADLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63336 # 2axpA.205.78 read from T0547.t04.many.frag # found chain 2axpA in template set T0547 205 :GLTSTELIE 2axpA 79 :ILTERQLRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63337 # 1vquA.205.166 read from T0547.t04.many.frag # found chain 1vquA in template set Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vquA)G155 T0547 206 :LTSTELIE 1vquA 156 :ASPEKVQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=63338 # 1px5A.205.162 read from T0547.t04.many.frag # found chain 1px5A in training set T0547 205 :GLTSTELIE 1px5A 163 :KPNPEIYVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=63339 # 1y9iA.205.41 read from T0547.t04.many.frag # found chain 1y9iA in training set T0547 205 :GLTSTELIE 1y9iA 42 :GLELDICRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=63340 # 2cw6A.205.151 read from T0547.t04.many.frag # found chain 2cw6A in template set T0547 205 :GLTSTELIE 2cw6A 179 :KISPAKVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63341 # 1nlnA.205.1 read from T0547.t04.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)G205 because first residue in template chain is (1nlnA)G2 T0547 206 :LTSTELIE 1nlnA 3 :SSEQELKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63342 # 2ajtA.205.53 read from T0547.t04.many.frag # found chain 2ajtA in template set T0547 205 :GLTSTELIE 2ajtA 54 :GTTPDEITA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63343 # 1tbxA.205.36 read from T0547.t04.many.frag # found chain 1tbxA in template set Warning: unaligning (T0547)L206 (1tbxA)M38 because Y (epsilon') conformation "forbidden" or filtered. T0547 205 :G 1tbxA 37 :P T0547 207 :TSTELIE 1tbxA 39 :STATFYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=63345 # 1rcqA.206.131 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 206 :LTSTELIEA 1rcqA 132 :FFPEDFRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63346 # 1xg4A.206.130 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 206 :LTSTELIEA 1xg4A 132 :VSKEEMVDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63347 # 1su0B.206.81 read from T0547.t04.many.frag # found chain 1su0B in template set Warning: unaligning (T0547)T207 (1su0B)S83 because Y (epsilon') conformation "forbidden" or filtered. T0547 206 :L 1su0B 82 :K T0547 208 :STELIEA 1su0B 84 :KEEALAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=63349 # 1xo0A.206.46 read from T0547.t04.many.frag # found chain 1xo0A in template set T0547 206 :LTSTELIEA 1xo0A 66 :AEPEDVRDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=63350 # 1vlpA.206.341 read from T0547.t04.many.frag # found chain 1vlpA in training set T0547 206 :LTSTELIEA 1vlpA 330 :LNVEKAITY Number of specific fragments extracted= 1 number of extra gaps= 0 total=63351 # 1qwgA.206.110 read from T0547.t04.many.frag # found chain 1qwgA in training set T0547 206 :LTSTELIEA 1qwgA 111 :ISLEERNNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63352 # 1ofcX.206.142 read from T0547.t04.many.frag # found chain 1ofcX in template set T0547 206 :LTSTELIEA 1ofcX 830 :KTPEEVIEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=63353 # 1f74A.206.53 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 206 :LTSTELIEA 1f74A 54 :LSTEEKKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63354 # 2cw6A.206.152 read from T0547.t04.many.frag # found chain 2cw6A in template set T0547 206 :LTSTELIEA 2cw6A 180 :ISPAKVAEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63355 # 1v72A.206.156 read from T0547.t04.many.frag # found chain 1v72A in template set T0547 206 :LTSTELIEA 1v72A 157 :YTLDEIEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63356 # 1gk9B.206.276 read from T0547.t04.many.frag # found chain 1gk9B in training set T0547 206 :LTSTELIEA 1gk9B 277 :LTADQAWDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63357 # 2ajtA.206.54 read from T0547.t04.many.frag # found chain 2ajtA in template set T0547 206 :LTSTELIEA 2ajtA 55 :TTPDEITAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63358 # 1lv7A.206.87 read from T0547.t04.many.frag # found chain 1lv7A in training set Warning: unaligning (T0547)T207 (1lv7A)G232 because S (epsilon) conformation "forbidden" or filtered. T0547 206 :L 1lv7A 231 :V T0547 208 :STELIEA 1lv7A 233 :ASRVRDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=63360 # 1szqA.206.188 read from T0547.t04.many.frag # found chain 1szqA in template set T0547 206 :LTSTELIEA 1szqA 189 :LTREEILNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63361 # 1ujpA.206.73 read from T0547.t04.many.frag # found chain 1ujpA in training set T0547 206 :LTSTELIEA 1ujpA 74 :MSVQGALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63362 # 1knwA.206.165 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 206 :LTSTELIEA 1knwA 166 :IWYTDLPAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63363 # 1uarA.206.147 read from T0547.t04.many.frag # found chain 1uarA in training set T0547 206 :LTSTELIEA 1uarA 148 :AYRDDVLEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=63364 # 1eu1A.206.298 read from T0547.t04.many.frag # found chain 1eu1A in training set T0547 206 :LTSTELIEA 1eu1A 299 :LPAEQIREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63365 # 1wddS.206.20 read from T0547.t04.many.frag # found chain 1wddS in training set T0547 206 :LTSTELIEA 1wddS 21 :LTVEDLLKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=63366 # 1m15A.206.139 read from T0547.t04.many.frag # found chain 1m15A in training set T0547 206 :LTSTELIEA 1m15A 140 :LTAEQYKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=63367 # 1vpqA.206.223 read from T0547.t04.many.frag # found chain 1vpqA in template set T0547 206 :LTSTELIEA 1vpqA 212 :YSEEELKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63368 # 1px5A.206.163 read from T0547.t04.many.frag # found chain 1px5A in training set T0547 206 :LTSTELIEA 1px5A 164 :PNPEIYVQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63369 # 2c5uA.206.122 read from T0547.t04.many.frag # found chain 2c5uA in template set T0547 206 :LTSTELIEA 2c5uA 122 :IKSEQALMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63370 # 1vp4A.206.166 read from T0547.t04.many.frag # found chain 1vp4A in template set T0547 206 :LTSTELIEA 1vp4A 155 :MDLNVLERK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63371 # 1zp4A.206.185 read from T0547.t04.many.frag # found chain 1zp4A in template set T0547 206 :LTSTELIEA 1zp4A 186 :FDVESYLRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63372 # 1q6zA.206.184 read from T0547.t04.many.frag # found chain 1q6zA in training set T0547 206 :LTSTELIEA 1q6zA 185 :LNDQDLDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63373 # 2aeuA.206.155 read from T0547.t04.many.frag # found chain 2aeuA in training set T0547 206 :LTSTELIEA 2aeuA 156 :IELENFKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63374 # 1g5aA.206.159 read from T0547.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0547)L206 (1g5aA)G160 because S (epsilon) conformation "forbidden" or filtered. T0547 207 :TSTELIEA 1g5aA 161 :TIGDLREV Number of specific fragments extracted= 1 number of extra gaps= 1 total=63375 # 2aebA.206.251 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)T209 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0547)E210 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 T0547 206 :LTS 2aebA 252 :LTY T0547 211 :LIEA 2aebA 257 :GLYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=63377 1vgjA expands to /projects/compbio/data/pdb/1vgj.pdb.gz 1vgjA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vgjA.206.48 read from T0547.t04.many.frag # adding 1vgjA to template set # found chain 1vgjA in template set T0547 206 :LTSTELIEA 1vgjA 49 :ITEEQAEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63378 # 1su0B.207.82 read from T0547.t04.many.frag # found chain 1su0B in template set T0547 207 :TSTELIEAV 1su0B 83 :SKEEALALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63379 # 1xg4A.207.131 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 207 :TSTELIEAV 1xg4A 133 :SKEEMVDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63380 # 1colA.207.54 read from T0547.t04.many.frag # found chain 1colA in template set T0547 207 :TSTELIEAV 1colA 55 :SFDDAMASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63381 # 1uslA.207.123 read from T0547.t04.many.frag # found chain 1uslA in template set T0547 207 :TSTELIEAV 1uslA 116 :TVAEALAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63382 # 1vlpA.207.342 read from T0547.t04.many.frag # found chain 1vlpA in training set T0547 207 :TSTELIEAV 1vlpA 331 :NVEKAITYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=63383 # 1gk9B.207.277 read from T0547.t04.many.frag # found chain 1gk9B in training set T0547 207 :TSTELIEAV 1gk9B 278 :TADQAWDVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63384 # 1qtnA.207.77 read from T0547.t04.many.frag # found chain 1qtnA in template set T0547 207 :TSTELIEAV 1qtnA 288 :TVEQIYEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63385 # 2ajtA.207.55 read from T0547.t04.many.frag # found chain 2ajtA in template set T0547 207 :TSTELIEAV 2ajtA 56 :TPDEITAIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=63386 # 1ofcX.207.143 read from T0547.t04.many.frag # found chain 1ofcX in template set T0547 207 :TSTELIEAV 1ofcX 831 :TPEEVIEYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63387 # 1v72A.207.157 read from T0547.t04.many.frag # found chain 1v72A in template set T0547 207 :TSTELIEAV 1v72A 158 :TLDEIEAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=63388 # 1uarA.207.148 read from T0547.t04.many.frag # found chain 1uarA in training set T0547 207 :TSTELIEAV 1uarA 149 :YRDDVLEHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63389 # 1wddS.207.21 read from T0547.t04.many.frag # found chain 1wddS in training set T0547 207 :TSTELIEAV 1wddS 22 :TVEDLLKQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63390 # 1eu1A.207.299 read from T0547.t04.many.frag # found chain 1eu1A in training set T0547 207 :TSTELIEAV 1eu1A 300 :PAEQIRELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63391 # 1senA.207.134 read from T0547.t04.many.frag # found chain 1senA in training set T0547 207 :TSTELIEAV 1senA 143 :SAEQVVQGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=63392 # 1g5aA.207.160 read from T0547.t04.many.frag # found chain 1g5aA in training set T0547 207 :TSTELIEAV 1g5aA 161 :TIGDLREVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63393 # 1xo0A.207.47 read from T0547.t04.many.frag # found chain 1xo0A in template set T0547 207 :TSTELIEAV 1xo0A 67 :EPEDVRDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63394 # 2cw6A.207.153 read from T0547.t04.many.frag # found chain 2cw6A in template set T0547 207 :TSTELIEAV 2cw6A 181 :SPAKVAEVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=63395 # 1rcqA.207.132 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 207 :TSTELIEAV 1rcqA 133 :FPEDFRAAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=63396 # 1ujpA.207.74 read from T0547.t04.many.frag # found chain 1ujpA in training set T0547 207 :TSTELIEAV 1ujpA 75 :SVQGALELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63397 # 1h05A.207.53 read from T0547.t04.many.frag # found chain 1h05A in training set T0547 207 :TSTELIEAV 1h05A 54 :SEAQLLDWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63398 1yg2A expands to /projects/compbio/data/pdb/1yg2.pdb.gz 1yg2A:# 1yg2A.207.35 read from T0547.t04.many.frag # adding 1yg2A to template set # found chain 1yg2A in template set T0547 207 :TSTELIEAV 1yg2A 36 :SHQQVYREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63399 # 1go3F.207.47 read from T0547.t04.many.frag # found chain 1go3F in training set T0547 207 :TSTELIEAV 1go3F 48 :DKEEAKKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63400 # 1zp4A.207.186 read from T0547.t04.many.frag # found chain 1zp4A in template set T0547 207 :TSTELIEAV 1zp4A 187 :DVESYLRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63401 # 1zl0A.207.63 read from T0547.t04.many.frag # found chain 1zl0A in training set T0547 207 :TSTELIEAV 1zl0A 62 :TVEQRLEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63402 # 1v54E.207.24 read from T0547.t04.many.frag # found chain 1v54E in training set T0547 207 :TSTELIEAV 1v54E 25 :DAWELRKGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=63403 # 1sflA.207.139 read from T0547.t04.many.frag # found chain 1sflA in template set T0547 207 :TSTELIEAV 1sflA 140 :PLDELQFIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63404 # 1y3nA.207.155 read from T0547.t04.many.frag # found chain 1y3nA in template set T0547 207 :TSTELIEAV 1y3nA 156 :TVDELYTVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63405 # 1fr2A.207.10 read from T0547.t04.many.frag # found chain 1fr2A in training set T0547 207 :TSTELIEAV 1fr2A 11 :TEAEFLQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63406 # 1szqA.207.189 read from T0547.t04.many.frag # found chain 1szqA in template set T0547 207 :TSTELIEAV 1szqA 190 :TREEILNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63407 # 1h8eA.207.208 read from T0547.t04.many.frag # found chain 1h8eA in template set T0547 207 :TSTELIEAV 1h8eA 209 :KRSTVAQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63408 # 1g5aA.208.161 read from T0547.t04.many.frag # found chain 1g5aA in training set T0547 208 :STELIEAVN 1g5aA 162 :IGDLREVIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63409 # 1ofcX.208.144 read from T0547.t04.many.frag # found chain 1ofcX in template set T0547 208 :STELIEAVN 1ofcX 832 :PEEVIEYNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63410 # 1vlpA.208.343 read from T0547.t04.many.frag # found chain 1vlpA in training set T0547 208 :STELIEAVN 1vlpA 332 :VEKAITYSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=63411 # 1xg4A.208.132 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 208 :STELIEAVN 1xg4A 134 :KEEMVDRIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63412 # 1hx0A.208.75 read from T0547.t04.many.frag # found chain 1hx0A in training set T0547 208 :STELIEAVN 1hx0A 76 :ENEFRDMVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=63413 # 2cw6A.208.154 read from T0547.t04.many.frag # found chain 2cw6A in template set T0547 208 :STELIEAVN 2cw6A 182 :PAKVAEVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63414 # 1su0B.208.83 read from T0547.t04.many.frag # found chain 1su0B in template set T0547 208 :STELIEAVN 1su0B 84 :KEEALALAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63415 # 1go3F.208.48 read from T0547.t04.many.frag # found chain 1go3F in training set T0547 208 :STELIEAVN 1go3F 49 :KEEAKKLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63416 # 1zj8A.208.150 read from T0547.t04.many.frag # found chain 1zj8A in template set T0547 208 :STELIEAVN 1zj8A 140 :VENVPEIWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63417 # 1kptA.208.62 read from T0547.t04.many.frag # found chain 1kptA in training set T0547 208 :STELIEAVN 1kptA 63 :GTEACRHLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=63418 # 1jakA.208.229 read from T0547.t04.many.frag # found chain 1jakA in training set T0547 208 :STELIEAVN 1jakA 224 :KAEYKEIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63419 # 1ct5A.208.155 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 208 :STELIEAVN 1ct5A 157 :EAEIFEVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=63420 # 1xo0A.208.48 read from T0547.t04.many.frag # found chain 1xo0A in template set T0547 208 :STELIEAVN 1xo0A 68 :PEDVRDYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63421 # 1h8eA.208.209 read from T0547.t04.many.frag # found chain 1h8eA in template set T0547 208 :STELIEAVN 1h8eA 210 :RSTVAQLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63422 # 1ztpA.208.181 read from T0547.t04.many.frag # found chain 1ztpA in template set T0547 208 :STELIEAVN 1ztpA 182 :RLGVLEADS Number of specific fragments extracted= 1 number of extra gaps= 0 total=63423 # 1uslA.208.124 read from T0547.t04.many.frag # found chain 1uslA in template set T0547 208 :STELIEAVN 1uslA 117 :VAEALAIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63424 # 2b7nA.208.212 read from T0547.t04.many.frag # found chain 2b7nA in template set T0547 208 :STELIEAVN 2b7nA 213 :VLETKEIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63425 # 1y3nA.208.156 read from T0547.t04.many.frag # found chain 1y3nA in template set T0547 208 :STELIEAVN 1y3nA 157 :VDELYTVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63426 # 1zp4A.208.187 read from T0547.t04.many.frag # found chain 1zp4A in template set T0547 208 :STELIEAVN 1zp4A 188 :VESYLRFRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63427 # 1qwgA.208.112 read from T0547.t04.many.frag # found chain 1qwgA in training set T0547 208 :STELIEAVN 1qwgA 113 :LEERNNAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63428 # 1gk9B.208.278 read from T0547.t04.many.frag # found chain 1gk9B in training set T0547 208 :STELIEAVN 1gk9B 279 :ADQAWDVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63429 # 1yvvA.208.61 read from T0547.t04.many.frag # found chain 1yvvA in template set T0547 208 :STELIEAVN 1yvvA 62 :DRRFATAVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63430 # 1tbxA.208.39 read from T0547.t04.many.frag # found chain 1tbxA in template set T0547 208 :STELIEAVN 1tbxA 40 :TATFYDAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63431 # 1v72A.208.158 read from T0547.t04.many.frag # found chain 1v72A in template set T0547 208 :STELIEAVN 1v72A 159 :LDEIEAIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63432 # 2aeuA.208.157 read from T0547.t04.many.frag # found chain 2aeuA in training set T0547 208 :STELIEAVN 2aeuA 158 :LENFKKVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63433 # 1wddA.208.246 read from T0547.t04.many.frag # found chain 1wddA in training set T0547 208 :STELIEAVN 1wddA 247 :CEEMIKRAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63434 # 1lv7A.208.89 read from T0547.t04.many.frag # found chain 1lv7A in training set T0547 208 :STELIEAVN 1lv7A 233 :ASRVRDMFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63435 # 1fr2A.208.11 read from T0547.t04.many.frag # found chain 1fr2A in training set T0547 208 :STELIEAVN 1fr2A 12 :EAEFLQLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=63436 # 1uarA.208.149 read from T0547.t04.many.frag # found chain 1uarA in training set T0547 208 :STELIEAVN 1uarA 150 :RDDVLEHII Number of specific fragments extracted= 1 number of extra gaps= 0 total=63437 # 1wddS.208.22 read from T0547.t04.many.frag # found chain 1wddS in training set T0547 208 :STELIEAVN 1wddS 23 :VEDLLKQIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63438 # 1g5aA.209.162 read from T0547.t04.many.frag # found chain 1g5aA in training set T0547 209 :TELIEAVNL 1g5aA 163 :GDLREVIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63439 # 1hx0A.209.76 read from T0547.t04.many.frag # found chain 1hx0A in training set T0547 209 :TELIEAVNL 1hx0A 77 :NEFRDMVTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63440 # 1zj8A.209.151 read from T0547.t04.many.frag # found chain 1zj8A in template set T0547 209 :TELIEAVNL 1zj8A 141 :ENVPEIWRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63441 # 1vlpA.209.344 read from T0547.t04.many.frag # found chain 1vlpA in training set T0547 209 :TELIEAVNL 1vlpA 333 :EKAITYSHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63442 # 1h8eA.209.210 read from T0547.t04.many.frag # found chain 1h8eA in template set T0547 209 :TELIEAVNL 1h8eA 211 :STVAQLVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63443 # 1ofcX.209.145 read from T0547.t04.many.frag # found chain 1ofcX in template set T0547 209 :TELIEAVNL 1ofcX 833 :EEVIEYNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63444 # 1ct5A.209.156 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 209 :TELIEAVNL 1ct5A 158 :AEIFEVIDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63445 # 1v72A.209.159 read from T0547.t04.many.frag # found chain 1v72A in template set T0547 209 :TELIEAVNL 1v72A 160 :DEIEAIGDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63446 # 2aeuA.209.158 read from T0547.t04.many.frag # found chain 2aeuA in training set T0547 209 :TELIEAVNL 2aeuA 159 :ENFKKVINT Number of specific fragments extracted= 1 number of extra gaps= 0 total=63447 # 1qwgA.209.113 read from T0547.t04.many.frag # found chain 1qwgA in training set T0547 209 :TELIEAVNL 1qwgA 114 :EERNNAIKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63448 # 1ztpA.209.182 read from T0547.t04.many.frag # found chain 1ztpA in template set T0547 209 :TELIEAVNL 1ztpA 183 :LGVLEADSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63449 # 1xw8A.209.37 read from T0547.t04.many.frag # found chain 1xw8A in template set T0547 209 :TELIEAVNL 1xw8A 38 :QIMQACVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63450 # 1su0B.209.84 read from T0547.t04.many.frag # found chain 1su0B in template set T0547 209 :TELIEAVNL 1su0B 85 :EEALALADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63451 # 1zp4A.209.188 read from T0547.t04.many.frag # found chain 1zp4A in template set T0547 209 :TELIEAVNL 1zp4A 189 :ESYLRFRDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63452 # 1go3F.209.49 read from T0547.t04.many.frag # found chain 1go3F in training set T0547 209 :TELIEAVNL 1go3F 50 :EEAKKLVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63453 # 1kptA.209.63 read from T0547.t04.many.frag # found chain 1kptA in training set T0547 209 :TELIEAVNL 1kptA 64 :TEACRHLTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63454 # 1jakA.209.230 read from T0547.t04.many.frag # found chain 1jakA in training set T0547 209 :TELIEAVNL 1jakA 225 :AEYKEIVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=63455 # 1tbxA.209.40 read from T0547.t04.many.frag # found chain 1tbxA in template set T0547 209 :TELIEAVNL 1tbxA 41 :ATFYDAKKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63456 # 1dljA.209.94 read from T0547.t04.many.frag # found chain 1dljA in training set T0547 209 :TELIEAVNL 1dljA 95 :QHVETVIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63457 # 1wddA.209.247 read from T0547.t04.many.frag # found chain 1wddA in training set T0547 209 :TELIEAVNL 1wddA 248 :EEMIKRAVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63458 # 2cw6A.209.155 read from T0547.t04.many.frag # found chain 2cw6A in template set T0547 209 :TELIEAVNL 2cw6A 183 :AKVAEVTKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63459 # 1xo0A.209.49 read from T0547.t04.many.frag # found chain 1xo0A in template set T0547 209 :TELIEAVNL 1xo0A 69 :EDVRDYLLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=63460 # 1y3nA.209.157 read from T0547.t04.many.frag # found chain 1y3nA in template set T0547 209 :TELIEAVNL 1y3nA 158 :DELYTVLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63461 # 1wvfA.209.66 read from T0547.t04.many.frag # found chain 1wvfA in training set T0547 209 :TELIEAVNL 1wvfA 68 :EQVQGVVKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63462 # 1rcqA.209.134 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 209 :TELIEAVNL 1rcqA 135 :EDFRAAHER Number of specific fragments extracted= 1 number of extra gaps= 0 total=63463 # 1wddS.209.23 read from T0547.t04.many.frag # found chain 1wddS in training set T0547 209 :TELIEAVNL 1wddS 24 :EDLLKQIEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=63464 # 1vkyA.209.320 read from T0547.t04.many.frag # found chain 1vkyA in template set T0547 209 :TELIEAVNL 1vkyA 309 :DFVMEAYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63465 # 1xcbA.209.150 read from T0547.t04.many.frag # found chain 1xcbA in template set T0547 209 :TELIEAVNL 1xcbA 151 :EAAQKAADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63466 # 1vflA.209.193 read from T0547.t04.many.frag # found chain 1vflA in training set T0547 209 :TELIEAVNL 1vflA 192 :PGHVQAYAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63467 # 1xg4A.209.133 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 209 :TELIEAVNL 1xg4A 135 :EEMVDRIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63468 # 1ct5A.210.157 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 210 :ELIEAVNLL 1ct5A 159 :EIFEVIDFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63469 # 1g5aA.210.163 read from T0547.t04.many.frag # found chain 1g5aA in training set T0547 210 :ELIEAVNLL 1g5aA 164 :DLREVIAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63470 # 1hx0A.210.77 read from T0547.t04.many.frag # found chain 1hx0A in training set T0547 210 :ELIEAVNLL 1hx0A 78 :EFRDMVTRC Number of specific fragments extracted= 1 number of extra gaps= 0 total=63471 # 2aeuA.210.159 read from T0547.t04.many.frag # found chain 2aeuA in training set T0547 210 :ELIEAVNLL 2aeuA 160 :NFKKVINTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63472 # 1ztpA.210.183 read from T0547.t04.many.frag # found chain 1ztpA in template set T0547 210 :ELIEAVNLL 1ztpA 184 :GVLEADSAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63473 # 2absA.210.196 read from T0547.t04.many.frag # found chain 2absA in training set T0547 210 :ELIEAVNLL 2absA 177 :NALEVAGYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63474 # 1zj8A.210.152 read from T0547.t04.many.frag # found chain 1zj8A in template set T0547 210 :ELIEAVNLL 1zj8A 142 :NVPEIWRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63475 # 1rcqA.210.135 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 210 :ELIEAVNLL 1rcqA 136 :DFRAAHERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63476 # 1drw.210.83 read from T0547.t04.many.frag # found chain 1drw in template set T0547 210 :ELIEAVNLL 1drw 84 :GTLNHLAFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=63477 # 1go3F.210.50 read from T0547.t04.many.frag # found chain 1go3F in training set T0547 210 :ELIEAVNLL 1go3F 51 :EAKKLVEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63478 # 1wvfA.210.67 read from T0547.t04.many.frag # found chain 1wvfA in training set T0547 210 :ELIEAVNLL 1wvfA 69 :QVQGVVKIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=63479 # 1vlpA.210.345 read from T0547.t04.many.frag # found chain 1vlpA in training set T0547 210 :ELIEAVNLL 1vlpA 334 :KAITYSHAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63480 # 1xw8A.210.38 read from T0547.t04.many.frag # found chain 1xw8A in template set T0547 210 :ELIEAVNLL 1xw8A 39 :IMQACVREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63481 # 1h8eA.210.211 read from T0547.t04.many.frag # found chain 1h8eA in template set T0547 210 :ELIEAVNLL 1h8eA 212 :TVAQLVKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63482 # 1yx1A.210.142 read from T0547.t04.many.frag # found chain 1yx1A in training set T0547 210 :ELIEAVNLL 1yx1A 141 :VLERFFRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63483 # 1colA.210.57 read from T0547.t04.many.frag # found chain 1colA in template set T0547 210 :ELIEAVNLL 1colA 58 :DAMASLNKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63484 # 1su0B.210.85 read from T0547.t04.many.frag # found chain 1su0B in template set T0547 210 :ELIEAVNLL 1su0B 86 :EALALADIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63485 # 1ofcX.210.146 read from T0547.t04.many.frag # found chain 1ofcX in template set T0547 210 :ELIEAVNLL 1ofcX 834 :EVIEYNAVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63486 # 1qwgA.210.114 read from T0547.t04.many.frag # found chain 1qwgA in training set T0547 210 :ELIEAVNLL 1qwgA 115 :ERNNAIKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63487 # 1uslA.210.126 read from T0547.t04.many.frag # found chain 1uslA in template set T0547 210 :ELIEAVNLL 1uslA 119 :EALAIVDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63488 # 1v72A.210.160 read from T0547.t04.many.frag # found chain 1v72A in template set T0547 210 :ELIEAVNLL 1v72A 161 :EIEAIGDVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=63489 # 2aneA.210.41 read from T0547.t04.many.frag # found chain 2aneA in template set T0547 210 :ELIEAVNLL 2aneA 35 :KSIRCLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63490 # 1p1mA.210.181 read from T0547.t04.many.frag # found chain 1p1mA in training set T0547 210 :ELIEAVNLL 1p1mA 182 :YLKRVFDTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63491 # 1knwA.210.169 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 210 :ELIEAVNLL 1knwA 170 :DLPAALDVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63492 # 2exrA.210.72 read from T0547.t04.many.frag # found chain 2exrA in training set T0547 210 :ELIEAVNLL 2exrA 73 :DIAGAVKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63493 # 1kptA.210.64 read from T0547.t04.many.frag # found chain 1kptA in training set T0547 210 :ELIEAVNLL 1kptA 65 :EACRHLTNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63494 # 1px5A.210.167 read from T0547.t04.many.frag # found chain 1px5A in training set T0547 210 :ELIEAVNLL 1px5A 168 :IYVQLIKEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=63495 # 1y3nA.210.158 read from T0547.t04.many.frag # found chain 1y3nA in template set T0547 210 :ELIEAVNLL 1y3nA 159 :ELYTVLKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63496 # 1fobA.210.60 read from T0547.t04.many.frag # found chain 1fobA in training set T0547 210 :ELIEAVNLL 1fobA 61 :YNLELAKRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63497 # 1zp4A.210.189 read from T0547.t04.many.frag # found chain 1zp4A in template set T0547 210 :ELIEAVNLL 1zp4A 190 :SYLRFRDRC Number of specific fragments extracted= 1 number of extra gaps= 0 total=63498 # 1ct5A.211.158 read from T0547.t04.many.frag # found chain 1ct5A in template set T0547 211 :LIEAVNLLK 1ct5A 160 :IFEVIDFFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63499 # 1g5aA.211.164 read from T0547.t04.many.frag # found chain 1g5aA in training set T0547 211 :LIEAVNLLK 1g5aA 165 :LREVIAALH Number of specific fragments extracted= 1 number of extra gaps= 0 total=63500 # 1gci.211.104 read from T0547.t04.many.frag # found chain 1gci in training set T0547 211 :LIEAVNLLK 1gci 107 :IAQGLEWAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=63501 # 1hx0A.211.78 read from T0547.t04.many.frag # found chain 1hx0A in training set T0547 211 :LIEAVNLLK 1hx0A 79 :FRDMVTRCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63502 # 1knwA.211.170 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 211 :LIEAVNLLK 1knwA 171 :LPAALDVIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=63503 # 1rcqA.211.136 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 211 :LIEAVNLLK 1rcqA 137 :FRAAHERLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63504 # 1yx1A.211.143 read from T0547.t04.many.frag # found chain 1yx1A in training set T0547 211 :LIEAVNLLK 1yx1A 142 :LERFFRLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63505 # 2absA.211.197 read from T0547.t04.many.frag # found chain 2absA in training set T0547 211 :LIEAVNLLK 2absA 178 :ALEVAGYAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=63506 # 2aeuA.211.160 read from T0547.t04.many.frag # found chain 2aeuA in training set T0547 211 :LIEAVNLLK 2aeuA 161 :FKKVINTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63507 # 2aneA.211.42 read from T0547.t04.many.frag # found chain 2aneA in template set T0547 211 :LIEAVNLLK 2aneA 36 :SIRCLEAAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=63508 # 1zj8A.211.153 read from T0547.t04.many.frag # found chain 1zj8A in template set T0547 211 :LIEAVNLLK 1zj8A 143 :VPEIWRRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63509 # 1d8wA.211.121 read from T0547.t04.many.frag # found chain 1d8wA in training set T0547 211 :LIEAVNLLK 1d8wA 123 :FKNWVEWAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63510 # 1qwgA.211.115 read from T0547.t04.many.frag # found chain 1qwgA in training set T0547 211 :LIEAVNLLK 1qwgA 116 :RNNAIKRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63511 # 1v72A.211.161 read from T0547.t04.many.frag # found chain 1v72A in template set T0547 211 :LIEAVNLLK 1v72A 162 :IEAIGDVCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63512 # 1fobA.211.61 read from T0547.t04.many.frag # found chain 1fobA in training set T0547 211 :LIEAVNLLK 1fobA 62 :NLELAKRVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63513 # 1drw.211.84 read from T0547.t04.many.frag # found chain 1drw in template set T0547 211 :LIEAVNLLK 1drw 85 :TLNHLAFCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63514 # 1i1wA.211.65 read from T0547.t04.many.frag # found chain 1i1wA in training set T0547 211 :LIEAVNLLK 1i1wA 66 :ADYLVNWAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=63515 # 1go3F.211.51 read from T0547.t04.many.frag # found chain 1go3F in training set T0547 211 :LIEAVNLLK 1go3F 52 :AKKLVEELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63516 # 1xcbA.211.152 read from T0547.t04.many.frag # found chain 1xcbA in template set T0547 211 :LIEAVNLLK 1xcbA 153 :AQKAADLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63517 # 1wvfA.211.68 read from T0547.t04.many.frag # found chain 1wvfA in training set T0547 211 :LIEAVNLLK 1wvfA 70 :VQGVVKICN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63518 # 1vlpA.211.346 read from T0547.t04.many.frag # found chain 1vlpA in training set T0547 211 :LIEAVNLLK 1vlpA 335 :AITYSHAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63519 # 1p1mA.211.182 read from T0547.t04.many.frag # found chain 1p1mA in training set T0547 211 :LIEAVNLLK 1p1mA 183 :LKRVFDTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63520 # 1xw8A.211.39 read from T0547.t04.many.frag # found chain 1xw8A in template set T0547 211 :LIEAVNLLK 1xw8A 40 :MQACVREAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63521 # 1ztpA.211.184 read from T0547.t04.many.frag # found chain 1ztpA in template set T0547 211 :LIEAVNLLK 1ztpA 185 :VLEADSAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63522 # 1h8eA.211.212 read from T0547.t04.many.frag # found chain 1h8eA in template set T0547 211 :LIEAVNLLK 1h8eA 213 :VAQLVKRLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=63523 # 2exrA.211.73 read from T0547.t04.many.frag # found chain 2exrA in training set T0547 211 :LIEAVNLLK 2exrA 74 :IAGAVKAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63524 # 1ofcX.211.147 read from T0547.t04.many.frag # found chain 1ofcX in template set T0547 211 :LIEAVNLLK 1ofcX 835 :VIEYNAVFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=63525 # 1pea.211.185 read from T0547.t04.many.frag # found chain 1pea in template set T0547 211 :LIEAVNLLK 1pea 186 :LQRAVERIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=63526 # 1uslA.211.127 read from T0547.t04.many.frag # found chain 1uslA in template set T0547 211 :LIEAVNLLK 1uslA 120 :ALAIVDAFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63527 # 1kwgA.211.52 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 211 :LIEAVNLLK 1kwgA 53 :LDEAIATLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63528 # 1hx0A.212.79 read from T0547.t04.many.frag # found chain 1hx0A in training set T0547 212 :IEAVNLLKE 1hx0A 80 :RDMVTRCNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63529 # 1rcqA.212.137 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 212 :IEAVNLLKE 1rcqA 138 :RAAHERLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63530 # 1yx1A.212.144 read from T0547.t04.many.frag # found chain 1yx1A in training set T0547 212 :IEAVNLLKE 1yx1A 143 :ERFFRLAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=63531 # 2aneA.212.43 read from T0547.t04.many.frag # found chain 2aneA in template set T0547 212 :IEAVNLLKE 2aneA 37 :IRCLEAAMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63532 # 1drw.212.85 read from T0547.t04.many.frag # found chain 1drw in template set T0547 212 :IEAVNLLKE 1drw 86 :LNHLAFCRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=63533 # 1h8eA.212.213 read from T0547.t04.many.frag # found chain 1h8eA in template set T0547 212 :IEAVNLLKE 1h8eA 214 :AQLVKRLTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63534 # 1kwgA.212.53 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 212 :IEAVNLLKE 1kwgA 54 :DEAIATLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63535 # 1zj8A.212.154 read from T0547.t04.many.frag # found chain 1zj8A in template set T0547 212 :IEAVNLLKE 1zj8A 144 :PEIWRRLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63536 # 1d8wA.212.122 read from T0547.t04.many.frag # found chain 1d8wA in training set T0547 212 :IEAVNLLKE 1d8wA 124 :KNWVEWAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63537 # 1g5aA.212.165 read from T0547.t04.many.frag # found chain 1g5aA in training set T0547 212 :IEAVNLLKE 1g5aA 166 :REVIAALHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63538 # 1px5A.212.169 read from T0547.t04.many.frag # found chain 1px5A in training set T0547 212 :IEAVNLLKE 1px5A 170 :VQLIKECKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=63539 # 1p1mA.212.183 read from T0547.t04.many.frag # found chain 1p1mA in training set T0547 212 :IEAVNLLKE 1p1mA 184 :KRVFDTAKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=63540 # 1i1wA.212.66 read from T0547.t04.many.frag # found chain 1i1wA in training set T0547 212 :IEAVNLLKE 1i1wA 67 :DYLVNWAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=63541 # 1go3F.212.52 read from T0547.t04.many.frag # found chain 1go3F in training set T0547 212 :IEAVNLLKE 1go3F 53 :KKLVEELIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=63542 # 1xw8A.212.40 read from T0547.t04.many.frag # found chain 1xw8A in template set T0547 212 :IEAVNLLKE 1xw8A 41 :QACVREAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63543 # 1qwgA.212.116 read from T0547.t04.many.frag # found chain 1qwgA in training set T0547 212 :IEAVNLLKE 1qwgA 117 :NNAIKRAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63544 # 1gci.212.105 read from T0547.t04.many.frag # found chain 1gci in training set T0547 212 :IEAVNLLKE 1gci 108 :AQGLEWAGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63545 # 1lc5A.212.168 read from T0547.t04.many.frag # found chain 1lc5A in training set T0547 212 :IEAVNLLKE 1lc5A 169 :QAIADRCKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=63546 # 1ct5A.212.159 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)K219 (1ct5A)L168 because G (3-10) conformation "forbidden" or filtered. T0547 212 :IEAVNLL 1ct5A 161 :FEVIDFF T0547 220 :E 1ct5A 169 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=63548 # 1fobA.212.62 read from T0547.t04.many.frag # found chain 1fobA in training set T0547 212 :IEAVNLLKE 1fobA 63 :LELAKRVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63549 # 2absA.212.198 read from T0547.t04.many.frag # found chain 2absA in training set T0547 212 :IEAVNLLKE 2absA 179 :LEVAGYAHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=63550 # 2aeuA.212.161 read from T0547.t04.many.frag # found chain 2aeuA in training set T0547 212 :IEAVNLLKE 2aeuA 162 :KKVINTAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63551 # 7odcA.212.177 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 212 :IEAVNLLKE 7odcA 178 :RLLLERAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63552 # 1sfxA.212.22 read from T0547.t04.many.frag # found chain 1sfxA in training set T0547 212 :IEAVNLLKE 1sfxA 22 :VRIYSLLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63553 # 1zp4A.212.191 read from T0547.t04.many.frag # found chain 1zp4A in template set T0547 212 :IEAVNLLKE 1zp4A 192 :LRFRDRCVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=63554 # 1vlpA.212.347 read from T0547.t04.many.frag # found chain 1vlpA in training set T0547 212 :IEAVNLLKE 1vlpA 336 :ITYSHAAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63555 # 1wvfA.212.69 read from T0547.t04.many.frag # found chain 1wvfA in training set T0547 212 :IEAVNLLKE 1wvfA 71 :QGVVKICNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63556 # 2exrA.212.74 read from T0547.t04.many.frag # found chain 2exrA in training set T0547 212 :IEAVNLLKE 2exrA 75 :AGAVKAALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63557 # 1pea.212.186 read from T0547.t04.many.frag # found chain 1pea in template set T0547 212 :IEAVNLLKE 1pea 187 :QRAVERIYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=63558 # 1vyrA.212.253 read from T0547.t04.many.frag # found chain 1vyrA in training set T0547 212 :IEAVNLLKE 1vyrA 254 :LYLIEELAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63559 # 1d8wA.213.123 read from T0547.t04.many.frag # found chain 1d8wA in training set Warning: unaligning (T0547)N221 (1d8wA)N133 because G (3-10) conformation "forbidden" or filtered. T0547 213 :EAVNLLKE 1d8wA 125 :NWVEWAKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=63560 # 1g5aA.213.166 read from T0547.t04.many.frag # found chain 1g5aA in training set T0547 213 :EAVNLLKEN 1g5aA 167 :EVIAALHEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63561 # 1hx0A.213.80 read from T0547.t04.many.frag # found chain 1hx0A in training set T0547 213 :EAVNLLKEN 1hx0A 81 :DMVTRCNNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63562 # 1qwgA.213.117 read from T0547.t04.many.frag # found chain 1qwgA in training set T0547 213 :EAVNLLKEN 1qwgA 118 :NAIKRAKDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63563 # 1rcqA.213.138 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 T0547 213 :EAVNLLKE 1rcqA 139 :AAHERLRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=63564 # 1yx1A.213.145 read from T0547.t04.many.frag # found chain 1yx1A in training set T0547 213 :EAVNLLKEN 1yx1A 144 :RFFRLAERQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=63565 # 2aeuA.213.162 read from T0547.t04.many.frag # found chain 2aeuA in training set T0547 213 :EAVNLLKEN 2aeuA 163 :KVINTAKNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63566 # 2aneA.213.44 read from T0547.t04.many.frag # found chain 2aneA in template set T0547 213 :EAVNLLKEN 2aneA 38 :RCLEAAMDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=63567 # 1fobA.213.63 read from T0547.t04.many.frag # found chain 1fobA in training set T0547 213 :EAVNLLKEN 1fobA 64 :ELAKRVKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63568 # 1i1wA.213.67 read from T0547.t04.many.frag # found chain 1i1wA in training set T0547 213 :EAVNLLKEN 1i1wA 68 :YLVNWAQQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63569 # 1drw.213.86 read from T0547.t04.many.frag # found chain 1drw in template set T0547 213 :EAVNLLKEN 1drw 87 :NHLAFCRQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=63570 # 1gci.213.106 read from T0547.t04.many.frag # found chain 1gci in training set T0547 213 :EAVNLLKEN 1gci 109 :QGLEWAGNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63571 # 1p1mA.213.184 read from T0547.t04.many.frag # found chain 1p1mA in training set T0547 213 :EAVNLLKEN 1p1mA 185 :RVFDTAKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63572 # 1xw8A.213.41 read from T0547.t04.many.frag # found chain 1xw8A in template set T0547 213 :EAVNLLKEN 1xw8A 42 :ACVREAIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63573 # 7odcA.213.178 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 213 :EAVNLLKEN 7odcA 179 :LLLERAKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63574 # 1go3F.213.53 read from T0547.t04.many.frag # found chain 1go3F in training set T0547 213 :EAVNLLKEN 1go3F 54 :KLVEELISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63575 # 1h8eA.213.214 read from T0547.t04.many.frag # found chain 1h8eA in template set T0547 213 :EAVNLLKEN 1h8eA 215 :QLVKRLTDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63576 # 1vlpA.213.348 read from T0547.t04.many.frag # found chain 1vlpA in training set T0547 213 :EAVNLLKEN 1vlpA 337 :TYSHAAKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63577 # 1zj8A.213.155 read from T0547.t04.many.frag # found chain 1zj8A in template set T0547 213 :EAVNLLKEN 1zj8A 145 :EIWRRLDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63578 # 2absA.213.199 read from T0547.t04.many.frag # found chain 2absA in training set Warning: unaligning (T0547)N221 (2absA)I188 because E (beta_S) conformation "forbidden" or filtered. T0547 213 :EAVNLLKE 2absA 180 :EVAGYAHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=63579 # 1xo0A.213.53 read from T0547.t04.many.frag # found chain 1xo0A in template set T0547 213 :EAVNLLKEN 1xo0A 73 :DYLLYLQAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63580 # 1oltA.213.192 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 213 :EAVNLLKEN 1oltA 193 :ALLNHAREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63581 # 1knwA.213.172 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 213 :EAVNLLKEN 1knwA 173 :AALDVIQRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=63582 # 1kwgA.213.54 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 213 :EAVNLLKEN 1kwgA 55 :EAIATLAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63583 # 1vyrA.213.254 read from T0547.t04.many.frag # found chain 1vyrA in training set T0547 213 :EAVNLLKEN 1vyrA 255 :YLIEELAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63584 # 1v72A.213.163 read from T0547.t04.many.frag # found chain 1v72A in template set T0547 213 :EAVNLLKEN 1v72A 164 :AIGDVCKSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=63585 # 1px5A.213.170 read from T0547.t04.many.frag # found chain 1px5A in training set Warning: unaligning (T0547)N221 (1px5A)R179 because G (3-10) conformation "forbidden" or filtered. T0547 213 :EAVNLLKE 1px5A 171 :QLIKECKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=63586 # 1pea.213.187 read from T0547.t04.many.frag # found chain 1pea in template set T0547 213 :EAVNLLKEN 1pea 188 :RAVERIYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63587 1dzfA expands to /projects/compbio/data/pdb/1dzf.pdb.gz 1dzfA:# 1dzfA.213.94 read from T0547.t04.many.frag # adding 1dzfA to template set # found chain 1dzfA in template set T0547 213 :EAVNLLKEN 1dzfA 95 :TFVIHIQEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63588 # 1onrA.213.206 read from T0547.t04.many.frag # found chain 1onrA in template set T0547 213 :EAVNLLKEN 1onrA 208 :EIYQYYKEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=63589 # 1d8wA.214.124 read from T0547.t04.many.frag # found chain 1d8wA in training set Warning: unaligning (T0547)K222 (1d8wA)Q134 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1d8wA 126 :WVEWAKAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=63590 # 1rcqA.214.139 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 214 :AVNLLKE 1rcqA 140 :AHERLRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=63591 # 2aeuA.214.163 read from T0547.t04.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)K222 (2aeuA)E172 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 2aeuA 164 :VINTAKNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=63592 # 1p1mA.214.185 read from T0547.t04.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)K222 (1p1mA)N194 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1p1mA 186 :VFDTAKSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=63593 # 1i1wA.214.68 read from T0547.t04.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)N221 (1i1wA)N76 because G (3-10) conformation "forbidden" or filtered. T0547 214 :AVNLLKE 1i1wA 69 :LVNWAQQ T0547 222 :K 1i1wA 77 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=63595 # 1yx1A.214.146 read from T0547.t04.many.frag # found chain 1yx1A in training set Warning: unaligning (T0547)K222 (1yx1A)Q153 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1yx1A 145 :FFRLAERQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=63596 # 1h8eA.214.215 read from T0547.t04.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K222 (1h8eA)D224 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1h8eA 216 :LVKRLTDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=63597 # 1fobA.214.64 read from T0547.t04.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)K222 (1fobA)G73 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1fobA 65 :LAKRVKAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=63598 # 1yhtA.214.99 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)K222 (1yhtA)G108 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1yhtA 100 :IKAYAKAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=63599 # 1vlpA.214.349 read from T0547.t04.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)K222 (1vlpA)G346 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1vlpA 338 :YSHAAKEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=63600 # 7odcA.214.179 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K222 (7odcA)N188 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 7odcA 180 :LLERAKEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=63601 # 1g5aA.214.167 read from T0547.t04.many.frag # found chain 1g5aA in training set T0547 214 :AVNLLKENK 1g5aA 168 :VIAALHEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=63602 # 1hx0A.214.81 read from T0547.t04.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)K222 (1hx0A)G90 because T (delta_L) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1hx0A 82 :MVTRCNNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=63603 # 1onrA.214.207 read from T0547.t04.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)K222 (1onrA)G217 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1onrA 209 :IYQYYKEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=63604 # 1xo0A.214.54 read from T0547.t04.many.frag # found chain 1xo0A in template set Warning: unaligning (T0547)K222 (1xo0A)G82 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1xo0A 74 :YLLYLQAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=63605 # 1zp4A.214.193 read from T0547.t04.many.frag # found chain 1zp4A in template set T0547 214 :AVNLLKENK 1zp4A 194 :FRDRCVSAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=63606 # 1drw.214.87 read from T0547.t04.many.frag # found chain 1drw in template set T0547 214 :AVNLLKENK 1drw 88 :HLAFCRQHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=63607 # 1xw8A.214.42 read from T0547.t04.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)N221 (1xw8A)N50 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1xw8A)G51 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKE 1xw8A 43 :CVREAIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=63608 # 1zj8A.214.156 read from T0547.t04.many.frag # found chain 1zj8A in template set T0547 214 :AVNLLKENK 1zj8A 146 :IWRRLDDVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=63609 # 1dzfA.214.95 read from T0547.t04.many.frag # found chain 1dzfA in template set Warning: unaligning (T0547)K222 (1dzfA)N104 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1dzfA 96 :FVIHIQEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=63610 # 1v72A.214.164 read from T0547.t04.many.frag # found chain 1v72A in template set Warning: unaligning (T0547)K222 (1v72A)S173 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1v72A 165 :IGDVCKSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=63611 # 2f62A.214.89 read from T0547.t04.many.frag # found chain 2f62A in training set Warning: unaligning (T0547)K222 (2f62A)N98 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 2f62A 90 :EVGCAAAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=63612 # 1gci.214.107 read from T0547.t04.many.frag # found chain 1gci in training set Warning: unaligning (T0547)K222 (1gci)G118 because T (delta_L) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1gci 110 :GLEWAGNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=63613 # 1sfxA.214.24 read from T0547.t04.many.frag # found chain 1sfxA in training set Warning: unaligning (T0547)K222 (1sfxA)G32 because S (epsilon) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1sfxA 24 :IYSLLLER Number of specific fragments extracted= 1 number of extra gaps= 1 total=63614 # 1oltA.214.193 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 214 :AVNLLKENK 1oltA 194 :LLNHAREIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=63615 # 1e58A.214.39 read from T0547.t04.many.frag # found chain 1e58A in training set T0547 214 :AVNLLKENK 1e58A 40 :AGKLLKEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=63616 # 1vyrA.214.255 read from T0547.t04.many.frag # found chain 1vyrA in training set Warning: unaligning (T0547)K222 (1vyrA)G264 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1vyrA 256 :LIEELAKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=63617 # 1tljA.214.116 read from T0547.t04.many.frag # found chain 1tljA in template set T0547 214 :AVNLLKENK 1tljA 117 :ILKIAREAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=63618 # 1kwgA.214.55 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 214 :AVNLLKENK 1kwgA 56 :AIATLAAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=63619 # 1ed1A.214.36 read from T0547.t04.many.frag # found chain 1ed1A in template set Warning: unaligning (T0547)K222 (1ed1A)G45 because T (delta_L) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1ed1A 37 :AANELDRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=63620 # 1g5aA.215.168 read from T0547.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0547)K222 (1g5aA)G176 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1g5aA 169 :IAALHEA T0547 223 :L 1g5aA 177 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=63622 # 1knwA.215.174 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K222 (1knwA)H182 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1knwA 175 :LDVIQRH T0547 223 :L 1knwA 183 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=63624 # 1rcqA.215.140 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 215 :VNLLKE 1rcqA 141 :HERLRA T0547 223 :L 1rcqA 149 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=63626 # 7odcA.215.180 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K222 (7odcA)N188 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 7odcA 181 :LERAKEL T0547 223 :L 7odcA 189 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=63628 # 1j0dA.215.147 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)K222 (1j0dA)G155 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1j0dA 148 :LQELEDA T0547 223 :L 1j0dA 156 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=63630 # 1d8wA.215.125 read from T0547.t04.many.frag # found chain 1d8wA in training set Warning: unaligning (T0547)K222 (1d8wA)Q134 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1d8wA 127 :VEWAKAN T0547 223 :L 1d8wA 135 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=63632 # 1zy9A.215.255 read from T0547.t04.many.frag # found chain 1zy9A in template set Warning: unaligning (T0547)K222 (1zy9A)G251 because T (delta_L) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1zy9A 244 :AKVIAEN T0547 223 :L 1zy9A 252 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=63634 # 1i1wA.215.69 read from T0547.t04.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)K222 (1i1wA)G77 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1i1wA 70 :VNWAQQN T0547 223 :L 1i1wA 78 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=63636 # 1fobA.215.65 read from T0547.t04.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)K222 (1fobA)G73 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1fobA 66 :AKRVKAA T0547 223 :L 1fobA 74 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=63638 # 1oltA.215.194 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 215 :VNLLKENKL 1oltA 195 :LNHAREIGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63639 # 1tv8A.215.151 read from T0547.t04.many.frag # found chain 1tv8A in template set Warning: unaligning (T0547)N221 (1tv8A)I158 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1tv8A)G159 because T (delta_L) conformation "forbidden" or filtered. T0547 215 :VNLLKE 1tv8A 152 :IDYATS T0547 223 :L 1tv8A 160 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=63641 # 2aeuA.215.164 read from T0547.t04.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)N221 (2aeuA)K171 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (2aeuA)E172 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKE 2aeuA 165 :INTAKN T0547 223 :L 2aeuA 173 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=63643 # 1p1mA.215.186 read from T0547.t04.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)K222 (1p1mA)N194 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1p1mA 187 :FDTAKSL T0547 223 :L 1p1mA 195 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=63645 # 1go3F.215.55 read from T0547.t04.many.frag # found chain 1go3F in training set Warning: unaligning (T0547)K222 (1go3F)G63 because T (delta_L) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1go3F 56 :VEELISL T0547 223 :L 1go3F 64 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=63647 # 1xo0A.215.55 read from T0547.t04.many.frag # found chain 1xo0A in template set Warning: unaligning (T0547)K222 (1xo0A)G82 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1xo0A 75 :LLYLQAR T0547 223 :L 1xo0A 83 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=63649 # 1h8eA.215.216 read from T0547.t04.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K222 (1h8eA)D224 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1h8eA 217 :VKRLTDA T0547 223 :L 1h8eA 225 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=63651 # 1vp4A.215.175 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)K222 (1vp4A)G171 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1vp4A 164 :LSEFDKN T0547 223 :L 1vp4A 172 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=63653 # 1nkiA.215.77 read from T0547.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)K222 (1nkiA)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1nkiA 78 :AAQLRAH T0547 223 :L 1nkiA 86 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=63655 # 1e6iA.215.21 read from T0547.t04.many.frag # found chain 1e6iA in template set T0547 215 :VNLLKENKL 1e6iA 340 :LTELQNHAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63656 # 1dp4A.215.222 read from T0547.t04.many.frag # found chain 1dp4A in template set T0547 215 :VNLLKENKL 1dp4A 223 :MLLALNAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63657 # 1cs1A.215.159 read from T0547.t04.many.frag # found chain 1cs1A in training set T0547 215 :VNLLKENKL 1cs1A 160 :CHLAREVGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63658 # 1onrA.215.208 read from T0547.t04.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)K222 (1onrA)G217 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1onrA 210 :YQYYKEH T0547 223 :L 1onrA 218 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=63660 # 1p1xA.215.186 read from T0547.t04.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)K222 (1p1xA)G193 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1p1xA 186 :MEVIRDM T0547 223 :L 1p1xA 194 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=63662 # 1yg2A.215.43 read from T0547.t04.many.frag # found chain 1yg2A in template set Warning: unaligning (T0547)K222 (1yg2A)G51 because T (delta_L) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1yg2A 44 :LNKMGEQ T0547 223 :L 1yg2A 52 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=63664 # 1uasA.215.79 read from T0547.t04.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)K222 (1uasA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1uasA 80 :ADYVHAK T0547 223 :L 1uasA 88 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=63666 # 1nzjA.215.88 read from T0547.t04.many.frag # found chain 1nzjA in training set T0547 215 :VNLLKENKL 1nzjA 89 :LAWLHEQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63667 # 1yx1A.215.147 read from T0547.t04.many.frag # found chain 1yx1A in training set Warning: unaligning (T0547)K222 (1yx1A)Q153 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1yx1A 146 :FRLAERQ T0547 223 :L 1yx1A 154 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=63669 # 1pea.215.189 read from T0547.t04.many.frag # found chain 1pea in template set T0547 215 :VNLLKENKL 1pea 190 :VERIYQARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63670 # 1m5wA.215.119 read from T0547.t04.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)K222 (1m5wA)G127 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1m5wA 120 :CKRLADA T0547 223 :L 1m5wA 128 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=63672 # 1zp4A.215.194 read from T0547.t04.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)K222 (1zp4A)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1zp4A 195 :RDRCVSA T0547 223 :L 1zp4A 203 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=63674 # 1rcqA.216.141 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 216 :NLLKE 1rcqA 142 :ERLRA T0547 223 :LL 1rcqA 149 :KV Number of specific fragments extracted= 2 number of extra gaps= 1 total=63676 # 1h8eA.216.217 read from T0547.t04.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K222 (1h8eA)D224 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1h8eA 218 :KRLTDA T0547 223 :LL 1h8eA 225 :AM Number of specific fragments extracted= 2 number of extra gaps= 1 total=63678 # 1t3tA.216.948 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)N221 (1t3tA)Y946 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1t3tA)G947 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKE 1t3tA 941 :ALLAQ T0547 223 :LL 1t3tA 948 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=63680 # 1vp4A.216.176 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)K222 (1vp4A)G171 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1vp4A 165 :SEFDKN T0547 223 :LL 1vp4A 172 :KI Number of specific fragments extracted= 2 number of extra gaps= 1 total=63682 # 1e6iA.216.22 read from T0547.t04.many.frag # found chain 1e6iA in template set T0547 216 :NLLKENKLL 1e6iA 341 :TELQNHAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63683 # 1wzdA.216.60 read from T0547.t04.many.frag # found chain 1wzdA in training set Warning: unaligning (T0547)L224 (1wzdA)A69 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKENKL 1wzdA 61 :DAVRASGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=63684 # 1ccwA.216.75 read from T0547.t04.many.frag # found chain 1ccwA in training set T0547 216 :NLLKENKLL 1ccwA 76 :QKCDEAGLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63685 # 1oltA.216.195 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)K222 (1oltA)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1oltA 196 :NHAREI T0547 223 :LL 1oltA 203 :FT Number of specific fragments extracted= 2 number of extra gaps= 1 total=63687 # 1p1xA.216.187 read from T0547.t04.many.frag # found chain 1p1xA in training set T0547 216 :NLLKENKLL 1p1xA 187 :EVIRDMGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63688 # 1e58A.216.41 read from T0547.t04.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)K222 (1e58A)G48 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1e58A)S50 because Y (epsilon') conformation "forbidden" or filtered. T0547 216 :NLLKEN 1e58A 42 :KLLKEE T0547 223 :L 1e58A 49 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=63690 # 1dp4A.216.223 read from T0547.t04.many.frag # found chain 1dp4A in template set Warning: unaligning (T0547)K222 (1dp4A)G230 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1dp4A 224 :LLALNA T0547 223 :LL 1dp4A 231 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=63692 # 1u60A.216.172 read from T0547.t04.many.frag # found chain 1u60A in training set T0547 216 :NLLKENKLL 1u60A 173 :WLLYSAGYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63693 # 1i1wA.216.70 read from T0547.t04.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)K222 (1i1wA)G77 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1i1wA 71 :NWAQQN T0547 223 :LL 1i1wA 78 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=63695 # 1ysjA.216.163 read from T0547.t04.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)N221 (1ysjA)A145 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1ysjA)G146 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKE 1ysjA 140 :RKVLE T0547 223 :LL 1ysjA 147 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=63697 # 1wdaA.216.508 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K222 (1wdaA)G508 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1wdaA 502 :QEQQNE T0547 223 :LL 1wdaA 509 :HG Number of specific fragments extracted= 2 number of extra gaps= 1 total=63699 # 1ra0A.216.234 read from T0547.t04.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)K222 (1ra0A)G237 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1ra0A 231 :ALAHHE T0547 223 :LL 1ra0A 238 :MG Number of specific fragments extracted= 2 number of extra gaps= 1 total=63701 # 2anuA.216.41 read from T0547.t04.many.frag # found chain 2anuA in template set T0547 216 :NLLKENKLL 2anuA 30 :DLFGKHGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63702 # 1nkiA.216.78 read from T0547.t04.many.frag # found chain 1nkiA in training set T0547 216 :NLLKENKLL 1nkiA 79 :AQLRAHGVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63703 # 1go3F.216.56 read from T0547.t04.many.frag # found chain 1go3F in training set Warning: unaligning (T0547)N221 (1go3F)L62 because G (3-10) conformation "forbidden" or filtered. T0547 216 :NLLKE 1go3F 57 :EELIS T0547 222 :KLL 1go3F 63 :GID Number of specific fragments extracted= 2 number of extra gaps= 1 total=63705 # 1yg2A.216.44 read from T0547.t04.many.frag # found chain 1yg2A in template set Warning: unaligning (T0547)K222 (1yg2A)G51 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1yg2A 45 :NKMGEQ T0547 223 :LL 1yg2A 52 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=63707 # 7odcA.216.181 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K222 (7odcA)N188 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 7odcA 182 :ERAKEL T0547 223 :LL 7odcA 189 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=63709 # 1j0dA.216.148 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)K222 (1j0dA)G155 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1j0dA 149 :QELEDA T0547 223 :LL 1j0dA 156 :HK Number of specific fragments extracted= 2 number of extra gaps= 1 total=63711 # 1zxxA.216.205 read from T0547.t04.many.frag # found chain 1zxxA in template set T0547 216 :NLLKENKLL 1zxxA 206 :KQAQESGKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63712 # 1fobA.216.66 read from T0547.t04.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)K222 (1fobA)G73 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1fobA 67 :KRVKAA T0547 223 :LL 1fobA 74 :MS Number of specific fragments extracted= 2 number of extra gaps= 1 total=63714 # 1ed1A.216.38 read from T0547.t04.many.frag # found chain 1ed1A in template set Warning: unaligning (T0547)K222 (1ed1A)G45 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1ed1A 39 :NELDRF T0547 223 :LL 1ed1A 46 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=63716 # 1wddA.216.254 read from T0547.t04.many.frag # found chain 1wddA in training set T0547 216 :NLLKENKLL 1wddA 255 :VFARELGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=63717 # 1zp4A.216.195 read from T0547.t04.many.frag # found chain 1zp4A in template set T0547 216 :NLLKENKLL 1zp4A 196 :DRCVSAGID Number of specific fragments extracted= 1 number of extra gaps= 0 total=63718 # 1pa1A.216.207 read from T0547.t04.many.frag # found chain 1pa1A in template set T0547 216 :NLLKENKLL 1pa1A 696 :FKVRESGSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63719 # 1knwA.216.175 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K222 (1knwA)H182 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1knwA 176 :DVIQRH T0547 223 :LL 1knwA 183 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=63721 # 1vhvA.216.108 read from T0547.t04.many.frag # found chain 1vhvA in template set T0547 216 :NLLKENKLL 1vhvA 96 :LEAERKGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63722 # 1rcqA.217.142 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 217 :LLKE 1rcqA 143 :RLRA T0547 223 :LLE 1rcqA 149 :KVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=63724 # 1ra0A.217.235 read from T0547.t04.many.frag # found chain 1ra0A in training set T0547 217 :LLKENKLLE 1ra0A 232 :LAHHEGMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63725 # 1vp4A.217.177 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)N221 (1vp4A)N170 because G (3-10) conformation "forbidden" or filtered. T0547 217 :LLKE 1vp4A 166 :EFDK T0547 222 :KLLE 1vp4A 171 :GKIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=63727 # 1h8eA.217.218 read from T0547.t04.many.frag # found chain 1h8eA in template set T0547 217 :LLKENKLLE 1h8eA 219 :RLTDADAMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63728 # 1ysjA.217.164 read from T0547.t04.many.frag # found chain 1ysjA in template set T0547 217 :LLKENKLLE 1ysjA 141 :KVLEAGVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63729 # 1wzdA.217.61 read from T0547.t04.many.frag # found chain 1wzdA in training set Warning: unaligning (T0547)L224 (1wzdA)A69 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKENKL 1wzdA 62 :AVRASGF T0547 225 :E 1wzdA 70 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=63731 # 1t3tA.217.949 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)K222 (1t3tA)G947 because T (delta_L) conformation "forbidden" or filtered. T0547 217 :LLKEN 1t3tA 942 :LLAQY T0547 223 :LLE 1t3tA 948 :LAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=63733 # 1p1xA.217.188 read from T0547.t04.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)K222 (1p1xA)G193 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKEN 1p1xA 188 :VIRDM T0547 223 :LLE 1p1xA 194 :VEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=63735 # 1ccwA.217.76 read from T0547.t04.many.frag # found chain 1ccwA in training set Warning: unaligning (T0547)K222 (1ccwA)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 217 :LLKEN 1ccwA 77 :KCDEA T0547 223 :LLE 1ccwA 83 :LEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=63737 # 1u60A.217.173 read from T0547.t04.many.frag # found chain 1u60A in training set Warning: unaligning (T0547)K222 (1u60A)G179 because T (delta_L) conformation "forbidden" or filtered. T0547 217 :LLKEN 1u60A 174 :LLYSA T0547 223 :LLE 1u60A 180 :YLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=63739 # 1e6iA.217.23 read from T0547.t04.many.frag # found chain 1e6iA in template set Warning: unaligning (T0547)N221 (1e6iA)H346 because P (beta_P) conformation "forbidden" or filtered. T0547 217 :LLKE 1e6iA 342 :ELQN T0547 222 :KLLE 1e6iA 347 :AAAW Number of specific fragments extracted= 2 number of extra gaps= 1 total=63741 # 1vfgA.217.176 read from T0547.t04.many.frag # found chain 1vfgA in template set T0547 217 :LLKENKLLE 1vfgA 177 :QAVNLGLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63742 # 1c96A.217.338 read from T0547.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0547)K222 (1c96A)G345 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKEN 1c96A 340 :VAEKE T0547 223 :LLE 1c96A 346 :WPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=63744 # 1ro7A.217.63 read from T0547.t04.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)K222 (1ro7A)Q69 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1ro7A)Y71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1ro7A)E72 because E (beta_S) conformation "forbidden" or filtered. T0547 217 :LLKEN 1ro7A 64 :HLIQN T0547 223 :L 1ro7A 70 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=63746 # 1dp4A.217.224 read from T0547.t04.many.frag # found chain 1dp4A in template set T0547 217 :LLKENKLLE 1dp4A 225 :LALNAGLTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=63747 # 1wdaA.217.509 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K222 (1wdaA)G508 because T (delta_L) conformation "forbidden" or filtered. T0547 217 :LLKEN 1wdaA 503 :EQQNE T0547 223 :LLE 1wdaA 509 :HGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=63749 # 1oltA.217.196 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)N221 (1oltA)I201 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1oltA)G202 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1oltA)S205 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKE 1oltA 197 :HARE T0547 223 :LL 1oltA 203 :FT Number of specific fragments extracted= 2 number of extra gaps= 2 total=63751 # 1zdyA.217.76 read from T0547.t04.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)K222 (1zdyA)G82 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKEN 1zdyA 77 :TVVEK T0547 223 :LLE 1zdyA 83 :LFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=63753 # 1go3F.217.57 read from T0547.t04.many.frag # found chain 1go3F in training set T0547 217 :LLKENKLLE 1go3F 58 :ELISLGIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63754 # 1eyeA.217.162 read from T0547.t04.many.frag # found chain 1eyeA in template set Warning: unaligning (T0547)N221 (1eyeA)A167 because G (3-10) conformation "forbidden" or filtered. T0547 217 :LLKE 1eyeA 163 :DAVA T0547 222 :KLLE 1eyeA 168 :GVDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=63756 # 1pa1A.217.208 read from T0547.t04.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)K222 (1pa1A)G702 because T (delta_L) conformation "forbidden" or filtered. T0547 217 :LLKEN 1pa1A 697 :KVRES T0547 223 :LLE 1pa1A 703 :SLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=63758 # 1e58A.217.42 read from T0547.t04.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)N221 (1e58A)E47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1e58A)S50 because Y (epsilon') conformation "forbidden" or filtered. T0547 217 :LLKE 1e58A 43 :LLKE T0547 222 :KL 1e58A 48 :GY T0547 225 :E 1e58A 51 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=63761 # 1yg2A.217.45 read from T0547.t04.many.frag # found chain 1yg2A in template set T0547 217 :LLKENKLLE 1yg2A 46 :KMGEQGLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=63762 # 1pu6A.217.53 read from T0547.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0547)K222 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0547 217 :LLKEN 1pu6A 54 :NLKNA T0547 223 :LL 1pu6A 60 :IL Number of specific fragments extracted= 2 number of extra gaps= 2 total=63764 1g3kA expands to /projects/compbio/data/pdb/1g3k.pdb.gz 1g3kA:# 1g3kA.217.80 read from T0547.t04.many.frag # adding 1g3kA to template set # found chain 1g3kA in template set T0547 217 :LLKENKLLE 1g3kA 81 :DWRTDRALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63765 # 1nkiA.217.79 read from T0547.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)K222 (1nkiA)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 217 :LLKEN 1nkiA 80 :QLRAH T0547 223 :LLE 1nkiA 86 :VRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=63767 # 1vhvA.217.109 read from T0547.t04.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)K222 (1vhvA)G102 because T (delta_L) conformation "forbidden" or filtered. T0547 217 :LLKEN 1vhvA 97 :EAERK T0547 223 :LLE 1vhvA 103 :VKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=63769 # 1km4A.217.144 read from T0547.t04.many.frag # found chain 1km4A in template set Warning: unaligning (T0547)K222 (1km4A)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 217 :LLKEN 1km4A 145 :MGVDL T0547 223 :LLE 1km4A 151 :VKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=63771 # 1zxxA.217.206 read from T0547.t04.many.frag # found chain 1zxxA in template set Warning: unaligning (T0547)E225 (1zxxA)H215 because Y (epsilon') conformation "forbidden" or filtered. T0547 217 :LLKENKLL 1zxxA 207 :QAQESGKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=63772 # 2audA.217.152 read from T0547.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0547)N221 (2audA)N158 because G (3-10) conformation "forbidden" or filtered. T0547 217 :LLKE 2audA 154 :KMID T0547 222 :KLLE 2audA 159 :KEFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=63774 # 1t3tA.218.950 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)K222 (1t3tA)G947 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKEN 1t3tA 943 :LAQY T0547 223 :LLEQ 1t3tA 948 :LADC Number of specific fragments extracted= 2 number of extra gaps= 1 total=63776 # 1vp4A.218.178 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)N221 (1vp4A)N170 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1vp4A)G171 because L (left) conformation "forbidden" or filtered. T0547 218 :LKE 1vp4A 167 :FDK T0547 223 :LLEQ 1vp4A 172 :KIKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=63778 # 1ra0A.218.236 read from T0547.t04.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)K222 (1ra0A)G237 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1ra0A 233 :AHHE T0547 223 :LLEQ 1ra0A 238 :MGAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=63780 # 1ysjA.218.165 read from T0547.t04.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)E225 (1ysjA)N149 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1ysjA)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKENKLL 1ysjA 142 :VLEAGVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=63781 # 1h8eA.218.219 read from T0547.t04.many.frag # found chain 1h8eA in template set T0547 218 :LKENKLLEQ 1h8eA 220 :LTDADAMKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=63782 # 1rcqA.218.143 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 218 :LKE 1rcqA 144 :LRA T0547 223 :LLEQ 1rcqA 149 :KVAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=63784 # 1vfgA.218.177 read from T0547.t04.many.frag # found chain 1vfgA in template set T0547 218 :LKENKLLEQ 1vfgA 178 :AVNLGLLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63785 # 1x3mA.218.83 read from T0547.t04.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)K222 (1x3mA)D75 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1x3mA 71 :LEKR T0547 223 :LLEQ 1x3mA 76 :LTDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=63787 # 1p1xA.218.189 read from T0547.t04.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)K222 (1p1xA)G193 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1p1xA 189 :IRDM T0547 223 :LLEQ 1p1xA 194 :VEKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=63789 # 1u60A.218.174 read from T0547.t04.many.frag # found chain 1u60A in training set T0547 218 :LKENKLLEQ 1u60A 175 :LYSAGYLYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=63790 # 1wzdA.218.62 read from T0547.t04.many.frag # found chain 1wzdA in training set Warning: unaligning (T0547)L224 (1wzdA)A69 because L (left) conformation "forbidden" or filtered. T0547 218 :LKENKL 1wzdA 63 :VRASGF T0547 225 :EQ 1wzdA 70 :ES Number of specific fragments extracted= 2 number of extra gaps= 1 total=63792 # 1ccwA.218.77 read from T0547.t04.many.frag # found chain 1ccwA in training set Warning: unaligning (T0547)K222 (1ccwA)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKEN 1ccwA 78 :CDEA T0547 223 :LLEQ 1ccwA 83 :LEGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=63794 # 1c96A.218.339 read from T0547.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0547)K222 (1c96A)G345 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1c96A 341 :AEKE T0547 223 :LLEQ 1c96A 346 :WPLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=63796 # 1e6iA.218.24 read from T0547.t04.many.frag # found chain 1e6iA in template set T0547 218 :LKENKLLEQ 1e6iA 343 :LQNHAAAWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=63797 # 1nvmB.218.62 read from T0547.t04.many.frag # found chain 1nvmB in training set T0547 218 :LKENKLLEQ 1nvmB 63 :LIKLPEFAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63798 # 1eyeA.218.163 read from T0547.t04.many.frag # found chain 1eyeA in template set T0547 218 :LKENKLLEQ 1eyeA 164 :AVAAGVDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63799 # 2bw3A.218.222 read from T0547.t04.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)K222 (2bw3A)N302 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 2bw3A 298 :FKKA T0547 223 :LLEQ 2bw3A 303 :LQHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=63801 # 1zdyA.218.77 read from T0547.t04.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)E225 (1zdyA)P85 because P (beta_P) conformation "forbidden" or filtered. T0547 218 :LKENKLL 1zdyA 78 :VVEKGLF T0547 226 :Q 1zdyA 86 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=63803 # 2audA.218.153 read from T0547.t04.many.frag # found chain 2audA in template set T0547 218 :LKENKLLEQ 2audA 155 :MIDNKEFDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63804 # 1go3F.218.58 read from T0547.t04.many.frag # found chain 1go3F in training set T0547 218 :LKENKLLEQ 1go3F 59 :LISLGIDEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63805 # 2bbrA.218.142 read from T0547.t04.many.frag # found chain 2bbrA in training set Warning: unaligning (T0547)K222 (2bbrA)G147 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (2bbrA)S150 because Y (epsilon') conformation "forbidden" or filtered. T0547 218 :LKEN 2bbrA 143 :LENV T0547 223 :LL 2bbrA 148 :LV T0547 226 :Q 2bbrA 151 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=63808 # 1ro7A.218.64 read from T0547.t04.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)K222 (1ro7A)Q69 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1ro7A)Y71 because Y (epsilon') conformation "forbidden" or filtered. T0547 218 :LKEN 1ro7A 65 :LIQN T0547 223 :L 1ro7A 70 :E T0547 225 :EQ 1ro7A 72 :ET Number of specific fragments extracted= 3 number of extra gaps= 2 total=63811 # 1wdaA.218.510 read from T0547.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)N221 (1wdaA)E507 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1wdaA)G508 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKE 1wdaA 504 :QQN T0547 223 :LLEQ 1wdaA 509 :HGEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=63813 # 1whsA.218.198 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)N221 (1whsA)H195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0547 218 :LKE 1whsA 192 :WWN T0547 223 :LLEQ 1whsA 197 :IVSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=63815 # 1g3kA.218.81 read from T0547.t04.many.frag # found chain 1g3kA in template set Warning: unaligning (T0547)N221 (1g3kA)D85 because P (beta_P) conformation "forbidden" or filtered. T0547 218 :LKE 1g3kA 82 :WRT T0547 222 :KLLEQ 1g3kA 86 :RALRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=63817 # 1pa1A.218.209 read from T0547.t04.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)K222 (1pa1A)G702 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKEN 1pa1A 698 :VRES T0547 223 :LLEQ 1pa1A 703 :SLSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=63819 # 1dp4A.218.225 read from T0547.t04.many.frag # found chain 1dp4A in template set Warning: unaligning (T0547)N221 (1dp4A)A229 because G (3-10) conformation "forbidden" or filtered. T0547 218 :LKE 1dp4A 226 :ALN T0547 222 :KLLEQ 1dp4A 230 :GLTGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=63821 # 1mtyB.218.121 read from T0547.t04.many.frag # found chain 1mtyB in training set Warning: unaligning (T0547)K222 (1mtyB)G131 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1mtyB 127 :YSAD T0547 223 :LLEQ 1mtyB 132 :QIRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=63823 # 1pu6A.218.54 read from T0547.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0547)K222 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0547 218 :LKEN 1pu6A 55 :LKNA T0547 223 :LL 1pu6A 60 :IL T0547 226 :Q 1pu6A 63 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=63826 # 1oltA.218.197 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)K222 (1oltA)G202 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1oltA)S205 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1oltA 198 :AREI T0547 223 :LL 1oltA 203 :FT T0547 226 :Q 1oltA 206 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=63829 # 1vp4A.219.179 read from T0547.t04.many.frag # found chain 1vp4A in template set T0547 219 :KENKLLEQF 1vp4A 168 :DKNGKIKQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63830 # 1h8eA.219.220 read from T0547.t04.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K222 (1h8eA)D224 because L (left) conformation "forbidden" or filtered. T0547 219 :KEN 1h8eA 221 :TDA T0547 223 :LLEQF 1h8eA 225 :AMKYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=63832 # 1x3mA.219.84 read from T0547.t04.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)N221 (1x3mA)R74 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1x3mA)D75 because L (left) conformation "forbidden" or filtered. T0547 219 :KE 1x3mA 72 :EK T0547 223 :LLEQF 1x3mA 76 :LTDSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=63834 # 1t3tA.219.951 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)K222 (1t3tA)G947 because T (delta_L) conformation "forbidden" or filtered. T0547 219 :KEN 1t3tA 944 :AQY T0547 223 :LLEQF 1t3tA 948 :LADCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=63836 # 1rcqA.219.144 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 219 :KE 1rcqA 145 :RA T0547 223 :LLEQF 1rcqA 149 :KVAKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=63838 # 1ra0A.219.237 read from T0547.t04.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)K222 (1ra0A)G237 because L (left) conformation "forbidden" or filtered. T0547 219 :KEN 1ra0A 234 :HHE T0547 223 :LLEQF 1ra0A 238 :MGARV Number of specific fragments extracted= 2 number of extra gaps= 1 total=63840 # 1ysjA.219.166 read from T0547.t04.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)K222 (1ysjA)G146 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1ysjA)N149 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1ysjA)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 219 :KEN 1ysjA 143 :LEA T0547 223 :LL 1ysjA 147 :VL T0547 227 :F 1ysjA 151 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=63843 # 1vfgA.219.178 read from T0547.t04.many.frag # found chain 1vfgA in template set T0547 219 :KENKLLEQF 1vfgA 179 :VNLGLLKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63844 # 1ccwA.219.78 read from T0547.t04.many.frag # found chain 1ccwA in training set Warning: unaligning (T0547)K222 (1ccwA)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1ccwA)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 219 :KEN 1ccwA 79 :DEA T0547 223 :LL 1ccwA 83 :LE T0547 226 :QF 1ccwA 86 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=63847 # 1nvmB.219.63 read from T0547.t04.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)N221 (1nvmB)L66 because P (beta_P) conformation "forbidden" or filtered. T0547 219 :KE 1nvmB 64 :IK T0547 222 :KLLEQF 1nvmB 67 :PEFADI Number of specific fragments extracted= 2 number of extra gaps= 1 total=63849 # 2bw3A.219.223 read from T0547.t04.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)K222 (2bw3A)N302 because L (left) conformation "forbidden" or filtered. T0547 219 :KEN 2bw3A 299 :KKA T0547 223 :LLEQF 2bw3A 303 :LQHRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=63851 # 1p1xA.219.190 read from T0547.t04.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)K222 (1p1xA)G193 because L (left) conformation "forbidden" or filtered. T0547 219 :KEN 1p1xA 190 :RDM T0547 223 :LLEQF 1p1xA 194 :VEKTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=63853 # 1wzdA.219.63 read from T0547.t04.many.frag # found chain 1wzdA in training set Warning: unaligning (T0547)L224 (1wzdA)A69 because L (left) conformation "forbidden" or filtered. T0547 219 :KENKL 1wzdA 64 :RASGF T0547 225 :EQF 1wzdA 70 :ESL Number of specific fragments extracted= 2 number of extra gaps= 1 total=63855 # 2audA.219.154 read from T0547.t04.many.frag # found chain 2audA in template set T0547 219 :KENKLLEQF 2audA 156 :IDNKEFDLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63856 # 1e6iA.219.25 read from T0547.t04.many.frag # found chain 1e6iA in template set Warning: unaligning (T0547)N221 (1e6iA)H346 because P (beta_P) conformation "forbidden" or filtered. T0547 219 :KE 1e6iA 344 :QN T0547 222 :KLLEQF 1e6iA 347 :AAAWPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=63858 # 1c96A.219.340 read from T0547.t04.many.frag # found chain 1c96A in template set T0547 219 :KENKLLEQF 1c96A 342 :EKEGWPLDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63859 # 1mtyB.219.122 read from T0547.t04.many.frag # found chain 1mtyB in training set Warning: unaligning (T0547)K222 (1mtyB)G131 because L (left) conformation "forbidden" or filtered. T0547 219 :KEN 1mtyB 128 :SAD T0547 223 :LLEQF 1mtyB 132 :QIRAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=63861 # 1yg2A.219.47 read from T0547.t04.many.frag # found chain 1yg2A in template set T0547 219 :KENKLLEQF 1yg2A 48 :GEQGLVTCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63862 # 1eyeA.219.164 read from T0547.t04.many.frag # found chain 1eyeA in template set Warning: unaligning (T0547)K222 (1eyeA)G168 because T (delta_L) conformation "forbidden" or filtered. T0547 219 :KEN 1eyeA 165 :VAA T0547 223 :LLEQF 1eyeA 169 :VDPAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=63864 # 1s2oA.219.52 read from T0547.t04.many.frag # found chain 1s2oA in training set T0547 219 :KENKLLEQF 1s2oA 53 :KQVGLMEPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63865 # 1ro7A.219.65 read from T0547.t04.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)N221 (1ro7A)N68 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1ro7A)Q69 because L (left) conformation "forbidden" or filtered. T0547 219 :KE 1ro7A 66 :IQ T0547 223 :LLEQF 1ro7A 70 :EYETE Number of specific fragments extracted= 2 number of extra gaps= 1 total=63867 # 2bo4A.219.23 read from T0547.t04.many.frag # found chain 2bo4A in template set T0547 219 :KENKLLEQF 2bo4A 24 :AAHPRVHEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63868 # 2bfwA.219.62 read from T0547.t04.many.frag # found chain 2bfwA in training set T0547 219 :KENKLLEQF 2bfwA 276 :SSKKEFQEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=63869 # 1u60A.219.175 read from T0547.t04.many.frag # found chain 1u60A in training set Warning: unaligning (T0547)K222 (1u60A)G179 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1u60A)C183 because Y (epsilon') conformation "forbidden" or filtered. T0547 219 :KEN 1u60A 176 :YSA T0547 223 :LLE 1u60A 180 :YLY T0547 227 :F 1u60A 184 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=63872 # 1zdyA.219.78 read from T0547.t04.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)E225 (1zdyA)P85 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1zdyA)A86 because P (beta_P) conformation "forbidden" or filtered. T0547 219 :KENKLL 1zdyA 79 :VEKGLF T0547 227 :F 1zdyA 87 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=63874 # 2cygA.219.116 read from T0547.t04.many.frag # found chain 2cygA in training set T0547 219 :KENKLLEQF 2cygA 145 :SSAGLQNQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63875 # 2bbrA.219.143 read from T0547.t04.many.frag # found chain 2bbrA in training set T0547 219 :KENKLLEQF 2bbrA 144 :ENVGLVSPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=63876 # 2bvcA.219.127 read from T0547.t04.many.frag # found chain 2bvcA in template set T0547 219 :KENKLLEQF 2bvcA 120 :ISTGIADTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63877 # 1tg6A.219.235 read from T0547.t04.many.frag # found chain 1tg6A in template set T0547 219 :KENKLLEQF 1tg6A 180 :QEFGILDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63878 # 1q2lA.219.304 read from T0547.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)K222 (1q2lA)G331 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1q2lA)G335 because Y (epsilon') conformation "forbidden" or filtered. T0547 219 :KEN 1q2lA 328 :QKQ T0547 223 :LLE 1q2lA 332 :LVE T0547 227 :F 1q2lA 336 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=63881 # 1x3mA.220.85 read from T0547.t04.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)K222 (1x3mA)D75 because L (left) conformation "forbidden" or filtered. T0547 220 :EN 1x3mA 73 :KR T0547 223 :LLEQFT 1x3mA 76 :LTDSVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=63883 # 1t3tA.220.952 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 220 :ENKLLEQFT 1t3tA 945 :QYGLADCVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=63884 # 1vp4A.220.180 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)K222 (1vp4A)G171 because L (left) conformation "forbidden" or filtered. T0547 220 :EN 1vp4A 169 :KN T0547 223 :LLEQFT 1vp4A 172 :KIKQVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=63886 # 1h8eA.220.221 read from T0547.t04.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)N221 (1h8eA)A223 because G (3-10) conformation "forbidden" or filtered. T0547 220 :E 1h8eA 222 :D T0547 222 :KLLEQFT 1h8eA 224 :DAMKYTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=63888 # 1ysjA.220.167 read from T0547.t04.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)K222 (1ysjA)G146 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1ysjA)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 220 :EN 1ysjA 144 :EA T0547 223 :LLE 1ysjA 147 :VLN T0547 227 :FT 1ysjA 151 :VS Number of specific fragments extracted= 3 number of extra gaps= 2 total=63891 # 1ra0A.220.238 read from T0547.t04.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)K222 (1ra0A)G237 because L (left) conformation "forbidden" or filtered. T0547 220 :EN 1ra0A 235 :HE T0547 223 :LLEQFT 1ra0A 238 :MGARVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=63893 # 1rcqA.220.145 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 220 :E 1rcqA 146 :A T0547 223 :LLEQFT 1rcqA 149 :KVAKIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=63895 # 1r6wA.220.180 read from T0547.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)Q226 because of BadResidue code BAD_PEPTIDE in next template residue (1r6wA)I186 Warning: unaligning (T0547)F227 because of BadResidue code BAD_PEPTIDE at template residue (1r6wA)I186 T0547 220 :ENKLLE 1r6wA 179 :NPDYRD T0547 228 :T 1r6wA 187 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=63897 # 1nvmB.220.64 read from T0547.t04.many.frag # found chain 1nvmB in training set T0547 220 :ENKLLEQFT 1nvmB 65 :KLPEFADID Number of specific fragments extracted= 1 number of extra gaps= 0 total=63898 # 1ccwA.220.79 read from T0547.t04.many.frag # found chain 1ccwA in training set Warning: unaligning (T0547)N221 (1ccwA)A81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1ccwA)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 220 :E 1ccwA 80 :E T0547 222 :KLL 1ccwA 82 :GLE T0547 226 :QFT 1ccwA 86 :ILL Number of specific fragments extracted= 3 number of extra gaps= 2 total=63901 # 2bw3A.220.224 read from T0547.t04.many.frag # found chain 2bw3A in template set T0547 220 :ENKLLEQFT 2bw3A 300 :KANLQHRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63902 # 1vfgA.220.179 read from T0547.t04.many.frag # found chain 1vfgA in template set T0547 220 :ENKLLEQFT 1vfgA 180 :NLGLLKEAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=63903 # 1efpB.220.50 read from T0547.t04.many.frag # found chain 1efpB in template set Warning: unaligning (T0547)K222 (1efpB)G53 because L (left) conformation "forbidden" or filtered. T0547 220 :EN 1efpB 51 :EK T0547 223 :LLEQFT 1efpB 54 :QAEEII Number of specific fragments extracted= 2 number of extra gaps= 1 total=63905 # 1vhtA.220.118 read from T0547.t04.many.frag # found chain 1vhtA in training set Warning: unaligning (T0547)K222 (1vhtA)S119 because L (left) conformation "forbidden" or filtered. T0547 220 :EN 1vhtA 117 :EN T0547 223 :LLEQFT 1vhtA 120 :LYKKAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=63907 # 1c96A.220.341 read from T0547.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0547)N221 (1c96A)E344 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1c96A)G345 because L (left) conformation "forbidden" or filtered. T0547 220 :E 1c96A 343 :K T0547 223 :LLEQFT 1c96A 346 :WPLDIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=63909 # 1q92A.220.120 read from T0547.t04.many.frag # found chain 1q92A in training set T0547 220 :ENKLLEQFT 1q92A 152 :GPDFLEQIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63910 # 1mtyB.220.123 read from T0547.t04.many.frag # found chain 1mtyB in training set T0547 220 :ENKLLEQFT 1mtyB 129 :ADGQIRAMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=63911 # 2bfwA.220.63 read from T0547.t04.many.frag # found chain 2bfwA in training set T0547 220 :ENKLLEQFT 2bfwA 277 :SKKEFQEMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=63912 # 1t7lA.220.297 read from T0547.t04.many.frag # found chain 1t7lA in template set T0547 220 :ENKLLEQFT 1t7lA 266 :KHGFPEDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=63913 # 1p1xA.220.191 read from T0547.t04.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)N221 (1p1xA)M192 because G (3-10) conformation "forbidden" or filtered. T0547 220 :E 1p1xA 191 :D T0547 222 :KLLEQFT 1p1xA 193 :GVEKTVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=63915 # 1t4bA.220.22 read from T0547.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)K222 (1t4bA)R25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F227 (1t4bA)I30 because Y (epsilon') conformation "forbidden" or filtered. T0547 220 :EN 1t4bA 23 :EE T0547 223 :LLEQ 1t4bA 26 :DFDA T0547 228 :T 1t4bA 31 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=63918 # 1kmvA.220.101 read from T0547.t04.many.frag # found chain 1kmvA in training set T0547 220 :ENKLLEQFT 1kmvA 102 :QPELANKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=63919 # 1nlnA.220.13 read from T0547.t04.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)N221 (1nlnA)L15 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1nlnA)G16 because T (delta_L) conformation "forbidden" or filtered. T0547 220 :E 1nlnA 14 :D T0547 223 :LLEQFT 1nlnA 17 :CGPYFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=63921 # 2cygA.220.117 read from T0547.t04.many.frag # found chain 2cygA in training set Warning: unaligning (T0547)K222 (2cygA)G148 because T (delta_L) conformation "forbidden" or filtered. T0547 220 :EN 2cygA 146 :SA T0547 223 :LLEQFT 2cygA 149 :LQNQIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=63923 # 1eyeA.220.165 read from T0547.t04.many.frag # found chain 1eyeA in template set Warning: unaligning (T0547)N221 (1eyeA)A167 because G (3-10) conformation "forbidden" or filtered. T0547 220 :E 1eyeA 166 :A T0547 222 :KLLEQFT 1eyeA 168 :GVDPARL Number of specific fragments extracted= 2 number of extra gaps= 1 total=63925 # 1dc1A.220.227 read from T0547.t04.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)K222 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 Warning: unaligning (T0547)L223 (1dc1A)Q231 because L (left) conformation "forbidden" or filtered. T0547 224 :LEQFT 1dc1A 232 :PEKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63926 # 1eziA.220.40 read from T0547.t04.many.frag # found chain 1eziA in template set T0547 220 :ENKLLEQFT 1eziA 41 :SSKCFDRII Number of specific fragments extracted= 1 number of extra gaps= 0 total=63927 # 2audA.220.155 read from T0547.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0547)K222 (2audA)K159 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F227 (2audA)F164 because Y (epsilon') conformation "forbidden" or filtered. T0547 220 :EN 2audA 157 :DN T0547 223 :LLEQ 2audA 160 :EFDL T0547 228 :T 2audA 165 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=63930 # 2bo4A.220.24 read from T0547.t04.many.frag # found chain 2bo4A in template set Warning: unaligning (T0547)N221 (2bo4A)H26 because P (beta_P) conformation "forbidden" or filtered. T0547 220 :E 2bo4A 25 :A T0547 222 :KLLEQFT 2bo4A 27 :PRVHEVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=63932 # 1tg6A.220.236 read from T0547.t04.many.frag # found chain 1tg6A in template set T0547 220 :ENKLLEQFT 1tg6A 181 :EFGILDKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63933 # 1x3mA.221.86 read from T0547.t04.many.frag # found chain 1x3mA in template set T0547 221 :NKLLEQFTM 1x3mA 74 :RDLTDSVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63934 # 1r6wA.221.181 read from T0547.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)Q226 because of BadResidue code BAD_PEPTIDE in next template residue (1r6wA)I186 Warning: unaligning (T0547)F227 because of BadResidue code BAD_PEPTIDE at template residue (1r6wA)I186 Warning: unaligning (T0547)M229 (1r6wA)F188 because Y (epsilon') conformation "forbidden" or filtered. T0547 221 :NKLLE 1r6wA 180 :PDYRD T0547 228 :T 1r6wA 187 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=63936 # 1vp4A.221.181 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)M229 (1vp4A)F178 because Y (epsilon') conformation "forbidden" or filtered. T0547 221 :NKLLEQFT 1vp4A 170 :NGKIKQVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=63937 # 1nvmB.221.65 read from T0547.t04.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)N221 (1nvmB)L66 because P (beta_P) conformation "forbidden" or filtered. T0547 222 :KLLEQFTM 1nvmB 67 :PEFADIDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=63938 # 1t3tA.221.953 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 221 :NKLLEQFTM 1t3tA 946 :YGLADCVHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=63939 # 1ysjA.221.168 read from T0547.t04.many.frag # found chain 1ysjA in template set T0547 221 :NKLLEQFTM 1ysjA 145 :AGVLNGVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=63940 # 1h8eA.221.222 read from T0547.t04.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K222 (1h8eA)D224 because L (left) conformation "forbidden" or filtered. T0547 221 :N 1h8eA 223 :A T0547 223 :LLEQFTM 1h8eA 225 :AMKYTIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=63942 # 1vhtA.221.119 read from T0547.t04.many.frag # found chain 1vhtA in training set Warning: unaligning (T0547)K222 (1vhtA)S119 because L (left) conformation "forbidden" or filtered. T0547 221 :N 1vhtA 118 :N T0547 223 :LLEQFTM 1vhtA 120 :LYKKANR Number of specific fragments extracted= 2 number of extra gaps= 1 total=63944 # 1dc1A.221.228 read from T0547.t04.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)K222 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 Warning: unaligning (T0547)L223 (1dc1A)Q231 because L (left) conformation "forbidden" or filtered. T0547 224 :LEQFTM 1dc1A 232 :PEKYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63945 # 1rcqA.221.146 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 223 :LLEQFTM 1rcqA 149 :KVAKIVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=63946 # 2bfwA.221.64 read from T0547.t04.many.frag # found chain 2bfwA in training set T0547 221 :NKLLEQFTM 2bfwA 278 :KKEFQEMRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63947 # 1ra0A.221.239 read from T0547.t04.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)K222 (1ra0A)G237 because L (left) conformation "forbidden" or filtered. T0547 221 :N 1ra0A 236 :E T0547 223 :LLEQFTM 1ra0A 238 :MGARVTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=63949 # 1nt2A.221.120 read from T0547.t04.many.frag # found chain 1nt2A in template set T0547 221 :NKLLEQFTM 1nt2A 121 :SGIVEKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63950 # 1efpB.221.51 read from T0547.t04.many.frag # found chain 1efpB in template set Warning: unaligning (T0547)K222 (1efpB)G53 because L (left) conformation "forbidden" or filtered. T0547 221 :N 1efpB 52 :K T0547 223 :LLEQFTM 1efpB 54 :QAEEIIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=63952 # 1wpnA.221.82 read from T0547.t04.many.frag # found chain 1wpnA in training set T0547 221 :NKLLEQFTM 1wpnA 83 :IKDIEEVQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63953 # 1kmvA.221.102 read from T0547.t04.many.frag # found chain 1kmvA in training set T0547 221 :NKLLEQFTM 1kmvA 103 :PELANKVDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=63954 # 1q92A.221.121 read from T0547.t04.many.frag # found chain 1q92A in training set T0547 221 :NKLLEQFTM 1q92A 153 :PDFLEQIVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63955 # 1qyrA.221.110 read from T0547.t04.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE in next template residue (1qyrA)D131 Warning: unaligning (T0547)E225 because of BadResidue code BAD_PEPTIDE at template residue (1qyrA)D131 T0547 221 :NKL 1qyrA 127 :FSY T0547 226 :QFTM 1qyrA 132 :AIAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=63957 # 1yovA.221.119 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 221 :NKLLEQFTM 1yovA 117 :PSFFCRFTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63958 # 1musA.221.176 read from T0547.t04.many.frag # found chain 1musA in template set Warning: unaligning (T0547)N221 (1musA)G177 because S (epsilon) conformation "forbidden" or filtered. T0547 222 :KLLEQFTM 1musA 178 :SMMSNVIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=63959 # 1cjaA.221.64 read from T0547.t04.many.frag # found chain 1cjaA in template set Warning: unaligning (T0547)M229 (1cjaA)G74 because Y (epsilon') conformation "forbidden" or filtered. T0547 221 :NKLLEQFT 1cjaA 66 :WKNLQQFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=63960 # 1gjwA.221.77 read from T0547.t04.many.frag # found chain 1gjwA in template set T0547 221 :NKLLEQFTM 1gjwA 78 :PDWIKRSVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63961 # 1t7lA.221.298 read from T0547.t04.many.frag # found chain 1t7lA in template set T0547 221 :NKLLEQFTM 1t7lA 267 :HGFPEDKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63962 # 1jr2A.221.233 read from T0547.t04.many.frag # found chain 1jr2A in template set T0547 221 :NKLLEQFTM 1jr2A 213 :GDNIDQIKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=63963 # 1em8A.221.103 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 221 :NKLLEQFTM 1em8A 104 :ADFATAFTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=63964 # 1t4bA.221.23 read from T0547.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)K222 (1t4bA)R25 because L (left) conformation "forbidden" or filtered. T0547 221 :N 1t4bA 24 :E T0547 223 :LLEQFTM 1t4bA 26 :DFDAIRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=63966 # 2b9eA.221.166 read from T0547.t04.many.frag # found chain 2b9eA in training set T0547 221 :NKLLEQFTM 2b9eA 293 :DPRYHEVHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=63967 # 1xg4A.221.145 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 221 :NKLLEQFTM 1xg4A 147 :AKTDPDFVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63968 # 1noyA.221.176 read from T0547.t04.many.frag # found chain 1noyA in template set T0547 221 :NKLLEQFTM 1noyA 177 :QEILDRVIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=63969 # 2apjA.221.186 read from T0547.t04.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)L223 (2apjA)N189 because L (left) conformation "forbidden" or filtered. T0547 221 :NK 2apjA 187 :DL T0547 224 :LEQFTM 2apjA 190 :LPSLPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=63971 # 1x3mA.222.87 read from T0547.t04.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)K222 (1x3mA)D75 because L (left) conformation "forbidden" or filtered. T0547 223 :LLEQFTMI 1x3mA 76 :LTDSVALI Number of specific fragments extracted= 1 number of extra gaps= 1 total=63972 # 1r6wA.222.182 read from T0547.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)Q226 because of BadResidue code BAD_PEPTIDE in next template residue (1r6wA)I186 Warning: unaligning (T0547)F227 because of BadResidue code BAD_PEPTIDE at template residue (1r6wA)I186 Warning: unaligning (T0547)M229 (1r6wA)F188 because Y (epsilon') conformation "forbidden" or filtered. T0547 222 :KLLE 1r6wA 181 :DYRD T0547 228 :T 1r6wA 187 :A T0547 230 :I 1r6wA 189 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=63975 # 1nvmB.222.66 read from T0547.t04.many.frag # found chain 1nvmB in training set T0547 222 :KLLEQFTMI 1nvmB 67 :PEFADIDFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63976 # 1vp4A.222.182 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)K222 (1vp4A)G171 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (1vp4A)F178 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLEQFT 1vp4A 172 :KIKQVK T0547 230 :I 1vp4A 179 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=63978 # 1t3tA.222.954 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)K222 (1t3tA)G947 because T (delta_L) conformation "forbidden" or filtered. T0547 223 :LLEQFTMI 1t3tA 948 :LADCVHYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=63979 # 1dc1A.222.229 read from T0547.t04.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)K222 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0547 223 :LLEQFTMI 1dc1A 231 :QPEKYLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63980 # 1qyrA.222.111 read from T0547.t04.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE in next template residue (1qyrA)D131 Warning: unaligning (T0547)E225 because of BadResidue code BAD_PEPTIDE at template residue (1qyrA)D131 T0547 222 :KL 1qyrA 128 :SY T0547 226 :QFTMI 1qyrA 132 :AIADM Number of specific fragments extracted= 2 number of extra gaps= 1 total=63982 # 1rljA.222.68 read from T0547.t04.many.frag # found chain 1rljA in template set T0547 222 :KLLEQFTMI 1rljA 60 :KYAHLLLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63983 # 1ysjA.222.169 read from T0547.t04.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)K222 (1ysjA)G146 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1ysjA)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 223 :LLE 1ysjA 147 :VLN T0547 227 :FTMI 1ysjA 151 :VSAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=63985 # 1kmvA.222.103 read from T0547.t04.many.frag # found chain 1kmvA in training set T0547 222 :KLLEQFTMI 1kmvA 104 :ELANKVDMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63986 # 1nt2A.222.121 read from T0547.t04.many.frag # found chain 1nt2A in template set T0547 222 :KLLEQFTMI 1nt2A 122 :GIVEKVDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63987 # 1vhtA.222.120 read from T0547.t04.many.frag # found chain 1vhtA in training set Warning: unaligning (T0547)K222 (1vhtA)S119 because L (left) conformation "forbidden" or filtered. T0547 223 :LLEQFTMI 1vhtA 120 :LYKKANRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=63988 # 1h8eA.222.223 read from T0547.t04.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K222 (1h8eA)D224 because L (left) conformation "forbidden" or filtered. T0547 223 :LLEQFTMI 1h8eA 225 :AMKYTIVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=63989 # 1wpnA.222.83 read from T0547.t04.many.frag # found chain 1wpnA in training set T0547 222 :KLLEQFTMI 1wpnA 84 :KDIEEVQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=63990 # 1rcqA.222.147 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 223 :LLEQFTMI 1rcqA 149 :KVAKIVMM Number of specific fragments extracted= 1 number of extra gaps= 1 total=63991 # 1cjaA.222.65 read from T0547.t04.many.frag # found chain 1cjaA in template set T0547 222 :KLLEQFTMI 1cjaA 67 :KNLQQFKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63992 # 1noyA.222.177 read from T0547.t04.many.frag # found chain 1noyA in template set T0547 222 :KLLEQFTMI 1noyA 178 :EILDRVIYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=63993 # 1xg4A.222.146 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 222 :KLLEQFTMI 1xg4A 148 :KTDPDFVIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=63994 # 2bfwA.222.65 read from T0547.t04.many.frag # found chain 2bfwA in training set T0547 222 :KLLEQFTMI 2bfwA 279 :KEFQEMRFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=63995 # 1jr2A.222.234 read from T0547.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)Q226 (1jr2A)Q218 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (1jr2A)F221 because P (beta_P) conformation "forbidden" or filtered. T0547 222 :KLLE 1jr2A 214 :DNID T0547 227 :FT 1jr2A 219 :IK T0547 230 :I 1jr2A 222 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=63998 # 1yovA.222.120 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 222 :KLLEQFTMI 1yovA 118 :SFFCRFTVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=63999 # 2b9eA.222.167 read from T0547.t04.many.frag # found chain 2b9eA in training set T0547 222 :KLLEQFTMI 2b9eA 294 :PRYHEVHYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64000 # 1jixA.222.148 read from T0547.t04.many.frag # found chain 1jixA in training set T0547 222 :KLLEQFTMI 1jixA 149 :KKVDNVIEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64001 # 1efpB.222.52 read from T0547.t04.many.frag # found chain 1efpB in template set T0547 222 :KLLEQFTMI 1efpB 53 :GQAEEIIAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64002 # 1qlmA.222.158 read from T0547.t04.many.frag # found chain 1qlmA in template set T0547 222 :KLLEQFTMI 1qlmA 159 :VDPENLYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64003 # 1em8A.222.104 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 222 :KLLEQFTMI 1em8A 105 :DFATAFTEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64004 # 1wuiS.222.99 read from T0547.t04.many.frag # found chain 1wuiS in training set T0547 222 :KLLEQFTMI 1wuiS 100 :RILPKAQAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64005 4eugA expands to /projects/compbio/data/pdb/4eug.pdb.gz 4eugA:# 4eugA.222.50 read from T0547.t04.many.frag # adding 4eugA to template set # found chain 4eugA in template set T0547 222 :KLLEQFTMI 4eugA 51 :TELGDVKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64006 # 1ufyA.222.36 read from T0547.t04.many.frag # found chain 1ufyA in training set Warning: unaligning (T0547)M229 (1ufyA)A44 because Y (epsilon') conformation "forbidden" or filtered. T0547 222 :KLLEQFT 1ufyA 37 :QSYEELA T0547 230 :I 1ufyA 45 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=64008 # 1gjwA.222.78 read from T0547.t04.many.frag # found chain 1gjwA in template set T0547 222 :KLLEQFTMI 1gjwA 79 :DWIKRSVVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64009 # 1x3mA.223.88 read from T0547.t04.many.frag # found chain 1x3mA in template set T0547 223 :LLEQFTMIH 1x3mA 76 :LTDSVALIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64010 # 1r6wA.223.183 read from T0547.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)Q226 because of BadResidue code BAD_PEPTIDE in next template residue (1r6wA)I186 Warning: unaligning (T0547)F227 because of BadResidue code BAD_PEPTIDE at template residue (1r6wA)I186 T0547 223 :LLE 1r6wA 182 :YRD T0547 228 :TMIH 1r6wA 187 :AFLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=64012 # 1dc1A.223.230 read from T0547.t04.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)L223 (1dc1A)Q231 because L (left) conformation "forbidden" or filtered. T0547 224 :LEQFTMIH 1dc1A 232 :PEKYLLLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=64013 # 1rljA.223.69 read from T0547.t04.many.frag # found chain 1rljA in template set Warning: unaligning (T0547)M229 (1rljA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLEQFT 1rljA 61 :YAHLLL T0547 230 :IH 1rljA 68 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=64015 # 1nvmB.223.67 read from T0547.t04.many.frag # found chain 1nvmB in training set T0547 223 :LLEQFTMIH 1nvmB 68 :EFADIDFVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64016 # 1xg4A.223.147 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 223 :LLEQFTMIH 1xg4A 149 :TDPDFVIMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64017 # 1wuiS.223.100 read from T0547.t04.many.frag # found chain 1wuiS in training set T0547 223 :LLEQFTMIH 1wuiS 101 :ILPKAQAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64018 # 1qlmA.223.159 read from T0547.t04.many.frag # found chain 1qlmA in template set T0547 223 :LLEQFTMIH 1qlmA 160 :DPENLYLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64019 # 1qyrA.223.112 read from T0547.t04.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE in next template residue (1qyrA)D131 Warning: unaligning (T0547)E225 because of BadResidue code BAD_PEPTIDE at template residue (1qyrA)D131 T0547 223 :L 1qyrA 129 :Y T0547 226 :QFTMIH 1qyrA 132 :AIADMH Number of specific fragments extracted= 2 number of extra gaps= 1 total=64021 # 1t7lA.223.300 read from T0547.t04.many.frag # found chain 1t7lA in template set T0547 223 :LLEQFTMIH 1t7lA 269 :FPEDKKLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64022 # 1nt2A.223.122 read from T0547.t04.many.frag # found chain 1nt2A in template set T0547 223 :LLEQFTMIH 1nt2A 123 :IVEKVDLIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64023 # 1vp4A.223.183 read from T0547.t04.many.frag # found chain 1vp4A in template set T0547 223 :LLEQFTMIH 1vp4A 172 :KIKQVKFIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64024 # 1wpnA.223.84 read from T0547.t04.many.frag # found chain 1wpnA in training set T0547 223 :LLEQFTMIH 1wpnA 85 :DIEEVQVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64025 # 1ynpA.223.128 read from T0547.t04.many.frag # found chain 1ynpA in training set T0547 223 :LLEQFTMIH 1ynpA 109 :QTDYIDLYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64026 # 1qvzA.223.94 read from T0547.t04.many.frag # found chain 1qvzA in template set T0547 223 :LLEQFTMIH 1qvzA 95 :NADDYQIFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=64027 # 1vhtA.223.121 read from T0547.t04.many.frag # found chain 1vhtA in training set T0547 223 :LLEQFTMIH 1vhtA 120 :LYKKANRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64028 # 2apjA.223.188 read from T0547.t04.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)L223 (2apjA)N189 because L (left) conformation "forbidden" or filtered. T0547 224 :LEQFTMIH 2apjA 190 :LPSLPIIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=64029 # 1ysjA.223.170 read from T0547.t04.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)Q226 (1ysjA)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 223 :LLE 1ysjA 147 :VLN T0547 227 :FTMIH 1ysjA 151 :VSAIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=64031 # 1duvG.223.263 read from T0547.t04.many.frag # found chain 1duvG in training set Warning: unaligning (T0547)L223 (1duvG)G264 because T (delta_L) conformation "forbidden" or filtered. T0547 224 :LEQFTMIH 1duvG 265 :NPEVKFLH Number of specific fragments extracted= 1 number of extra gaps= 1 total=64032 # 1t3tA.223.955 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)H231 (1t3tA)G956 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLEQFTMI 1t3tA 948 :LADCVHYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=64033 # 1yovA.223.121 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 223 :LLEQFTMIH 1yovA 119 :FFCRFTVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64034 # 1em8A.223.105 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 223 :LLEQFTMIH 1em8A 106 :FATAFTEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64035 # 1gjwA.223.79 read from T0547.t04.many.frag # found chain 1gjwA in template set T0547 223 :LLEQFTMIH 1gjwA 80 :WIKRSVVYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64036 # 1h8eA.223.224 read from T0547.t04.many.frag # found chain 1h8eA in template set T0547 223 :LLEQFTMIH 1h8eA 225 :AMKYTIVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64037 # 1tvlA.223.87 read from T0547.t04.many.frag # found chain 1tvlA in template set T0547 223 :LLEQFTMIH 1tvlA 86 :VTKNIGLVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64038 # 2bduA.223.39 read from T0547.t04.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)L223 (2bduA)G40 because S (epsilon) conformation "forbidden" or filtered. T0547 224 :LEQFTMIH 2bduA 41 :AAKLQIIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=64039 # 1efpB.223.53 read from T0547.t04.many.frag # found chain 1efpB in template set T0547 223 :LLEQFTMIH 1efpB 54 :QAEEIIAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64040 # 1xdzA.223.137 read from T0547.t04.many.frag # found chain 1xdzA in training set Warning: unaligning (T0547)E225 (1xdzA)E139 because L (left) conformation "forbidden" or filtered. T0547 223 :LL 1xdzA 137 :VR T0547 226 :QFTMIH 1xdzA 140 :SYDIVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=64042 # 1sg4A.223.44 read from T0547.t04.many.frag # found chain 1sg4A in training set T0547 223 :LLEQFTMIH 1sg4A 45 :NDKSFRGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64043 # 1y0kA.223.134 read from T0547.t04.many.frag # found chain 1y0kA in training set T0547 223 :LLEQFTMIH 1y0kA 135 :DHGELDLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64044 # 1x3mA.224.89 read from T0547.t04.many.frag # found chain 1x3mA in template set T0547 224 :LEQFTMIHF 1x3mA 77 :TDSVALIGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=64045 # 1wuiS.224.101 read from T0547.t04.many.frag # found chain 1wuiS in training set T0547 224 :LEQFTMIHF 1wuiS 102 :LPKAQAVIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64046 # 1em8A.224.106 read from T0547.t04.many.frag # found chain 1em8A in template set Warning: unaligning (T0547)F232 (1em8A)D115 because Y (epsilon') conformation "forbidden" or filtered. T0547 224 :LEQFTMIH 1em8A 107 :ATAFTEVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=64047 # 1xg4A.224.148 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 224 :LEQFTMIHF 1xg4A 150 :DPDFVIMAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64048 # 1dc1A.224.231 read from T0547.t04.many.frag # found chain 1dc1A in training set T0547 224 :LEQFTMIHF 1dc1A 232 :PEKYLLLGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64049 # 1rljA.224.70 read from T0547.t04.many.frag # found chain 1rljA in template set Warning: unaligning (T0547)M229 (1rljA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0547 224 :LEQFT 1rljA 62 :AHLLL T0547 230 :IHF 1rljA 68 :VAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=64051 # 2apjA.224.189 read from T0547.t04.many.frag # found chain 2apjA in training set T0547 224 :LEQFTMIHF 2apjA 190 :LPSLPIIQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64052 # 1t7lA.224.301 read from T0547.t04.many.frag # found chain 1t7lA in template set T0547 224 :LEQFTMIHF 1t7lA 270 :PEDKKLVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64053 # 1qyrA.224.113 read from T0547.t04.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE in next template residue (1qyrA)D131 Warning: unaligning (T0547)E225 because of BadResidue code BAD_PEPTIDE at template residue (1qyrA)D131 Warning: unaligning (T0547)M229 (1qyrA)D135 because Y (epsilon') conformation "forbidden" or filtered. T0547 226 :QFT 1qyrA 132 :AIA T0547 230 :IHF 1qyrA 136 :MHF Number of specific fragments extracted= 2 number of extra gaps= 2 total=64055 # 1nvmB.224.68 read from T0547.t04.many.frag # found chain 1nvmB in training set T0547 224 :LEQFTMIHF 1nvmB 69 :FADIDFVFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64056 # 1nt2A.224.123 read from T0547.t04.many.frag # found chain 1nt2A in template set T0547 224 :LEQFTMIHF 1nt2A 124 :VEKVDLIYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64057 # 1qlmA.224.160 read from T0547.t04.many.frag # found chain 1qlmA in template set T0547 224 :LEQFTMIHF 1qlmA 161 :PENLYLLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64058 # 2axoA.224.69 read from T0547.t04.many.frag # found chain 2axoA in training set T0547 224 :LEQFTMIHF 2axoA 70 :KGDVVGLSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64059 # 1y0kA.224.135 read from T0547.t04.many.frag # found chain 1y0kA in training set T0547 224 :LEQFTMIHF 1y0kA 136 :HGELDLLAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64060 # 1qvzA.224.95 read from T0547.t04.many.frag # found chain 1qvzA in template set T0547 224 :LEQFTMIHF 1qvzA 96 :ADDYQIFMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64061 # 1tvlA.224.88 read from T0547.t04.many.frag # found chain 1tvlA in template set T0547 224 :LEQFTMIHF 1tvlA 87 :TKNIGLVGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64062 # 1xdzA.224.138 read from T0547.t04.many.frag # found chain 1xdzA in training set T0547 224 :LEQFTMIHF 1xdzA 138 :RESYDIVTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64063 # 2bogX.224.177 read from T0547.t04.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)M229 (2bogX)G183 because Y (epsilon') conformation "forbidden" or filtered. T0547 224 :LEQFT 2bogX 178 :SNSAH T0547 230 :IHF 2bogX 184 :IAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=64065 # 1ynpA.224.129 read from T0547.t04.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)L224 (1ynpA)T110 because Y (epsilon') conformation "forbidden" or filtered. T0547 225 :EQFTMIHF 1ynpA 111 :DYIDLYQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=64066 # 2bduA.224.40 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 224 :LEQFTMIHF 2bduA 41 :AAKLQIITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64067 # 1r6wA.224.184 read from T0547.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)Q226 because of BadResidue code BAD_PEPTIDE in next template residue (1r6wA)I186 Warning: unaligning (T0547)F227 because of BadResidue code BAD_PEPTIDE at template residue (1r6wA)I186 Warning: unaligning (T0547)M229 (1r6wA)F188 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F232 (1r6wA)E191 because L (left) conformation "forbidden" or filtered. T0547 224 :LE 1r6wA 183 :RD T0547 228 :T 1r6wA 187 :A T0547 230 :IH 1r6wA 189 :LE Number of specific fragments extracted= 3 number of extra gaps= 3 total=64070 # 1su8A.224.433 read from T0547.t04.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)E225 (1su8A)G435 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (1su8A)G439 because Y (epsilon') conformation "forbidden" or filtered. T0547 224 :L 1su8A 434 :N T0547 226 :QFT 1su8A 436 :NIR T0547 230 :IHF 1su8A 440 :VCL Number of specific fragments extracted= 3 number of extra gaps= 2 total=64073 # 1yovA.224.122 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 224 :LEQFTMIHF 1yovA 120 :FCRFTVVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64074 # 1dp4A.224.232 read from T0547.t04.many.frag # found chain 1dp4A in template set T0547 224 :LEQFTMIHF 1dp4A 233 :GEDYVFFHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64075 # 1duvG.224.264 read from T0547.t04.many.frag # found chain 1duvG in training set Warning: unaligning (T0547)H231 (1duvG)H272 because E (beta_S) conformation "forbidden" or filtered. T0547 224 :LEQFTMI 1duvG 265 :NPEVKFL T0547 232 :F 1duvG 273 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=64077 # 1es9A.224.127 read from T0547.t04.many.frag # found chain 1es9A in training set T0547 224 :LEQFTMIHF 1es9A 128 :QPQARVVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64078 # 1ox0A.224.312 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 224 :LEQFTMIHF 1ox0A 294 :PEQVAYVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64079 # 1y5mA.224.93 read from T0547.t04.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)E225 (1y5mA)G111 because L (left) conformation "forbidden" or filtered. T0547 224 :L 1y5mA 110 :M T0547 226 :QFTMIHF 1y5mA 112 :GLDMLIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=64081 # 1xpkC.224.67 read from T0547.t04.many.frag # found chain 1xpkC in template set T0547 224 :LEQFTMIHF 1xpkC 68 :KKKIGMVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64082 # 1qsgA.224.84 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)M229 (1qsgA)G87 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)I230 (1qsgA)F88 because Y (epsilon') conformation "forbidden" or filtered. T0547 224 :LEQFT 1qsgA 82 :WPKFD T0547 231 :HF 1qsgA 89 :VH Number of specific fragments extracted= 2 number of extra gaps= 1 total=64084 # 2apjA.225.190 read from T0547.t04.many.frag # found chain 2apjA in training set T0547 225 :EQFTMIHFH 2apjA 191 :PSLPIIQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64085 # 1x3mA.225.90 read from T0547.t04.many.frag # found chain 1x3mA in template set T0547 225 :EQFTMIHFH 1x3mA 78 :DSVALIGHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64086 # 1ox0A.225.313 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 225 :EQFTMIHFH 1ox0A 295 :EQVAYVNAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=64087 # 1wuiS.225.102 read from T0547.t04.many.frag # found chain 1wuiS in training set T0547 225 :EQFTMIHFH 1wuiS 103 :PKAQAVIAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64088 # 1su8A.225.434 read from T0547.t04.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)M229 (1su8A)G439 because Y (epsilon') conformation "forbidden" or filtered. T0547 225 :EQFT 1su8A 435 :GNIR T0547 230 :IHFH 1su8A 440 :VCLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=64090 # 7odcA.225.188 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)M229 (7odcA)G193 because Y (epsilon') conformation "forbidden" or filtered. T0547 225 :EQFT 7odcA 189 :IDVI T0547 230 :IHFH 7odcA 194 :VSFH Number of specific fragments extracted= 2 number of extra gaps= 1 total=64092 # 1xg4A.225.149 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 225 :EQFTMIHFH 1xg4A 151 :PDFVIMART Number of specific fragments extracted= 1 number of extra gaps= 0 total=64093 # 1t7lA.225.302 read from T0547.t04.many.frag # found chain 1t7lA in template set T0547 225 :EQFTMIHFH 1t7lA 271 :EDKKLVAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64094 # 2axoA.225.70 read from T0547.t04.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)H233 (2axoA)H79 because P (beta_P) conformation "forbidden" or filtered. T0547 225 :EQFTMIHF 2axoA 71 :GDVVGLSY Number of specific fragments extracted= 1 number of extra gaps= 1 total=64095 # 1rljA.225.71 read from T0547.t04.many.frag # found chain 1rljA in template set T0547 225 :EQFTMIHFH 1rljA 63 :HLLLGVAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64096 # 1qyrA.225.114 read from T0547.t04.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)E225 because of BadResidue code BAD_PEPTIDE at template residue (1qyrA)D131 Warning: unaligning (T0547)H231 (1qyrA)H137 because D (zeta) conformation "forbidden" or filtered. T0547 226 :QFTMI 1qyrA 132 :AIADM T0547 232 :FH 1qyrA 138 :FM Number of specific fragments extracted= 2 number of extra gaps= 2 total=64098 # 1t71A.225.149 read from T0547.t04.many.frag # found chain 1t71A in template set T0547 225 :EQFTMIHFH 1t71A 150 :CDLHIVDFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=64099 # 1y0kA.225.136 read from T0547.t04.many.frag # found chain 1y0kA in training set T0547 225 :EQFTMIHFH 1y0kA 137 :GELDLLAFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64100 # 1knwA.225.182 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)M229 (1knwA)G187 because Y (epsilon') conformation "forbidden" or filtered. T0547 225 :EQFT 1knwA 183 :LQLV T0547 230 :IHFH 1knwA 188 :IHMH Number of specific fragments extracted= 2 number of extra gaps= 1 total=64102 # 1qvzA.225.96 read from T0547.t04.many.frag # found chain 1qvzA in template set T0547 225 :EQFTMIHFH 1qvzA 97 :DDYQIFMAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64103 # 1dc1A.225.232 read from T0547.t04.many.frag # found chain 1dc1A in training set T0547 225 :EQFTMIHFH 1dc1A 233 :EKYLLLGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64104 # 1xtpA.225.156 read from T0547.t04.many.frag # found chain 1xtpA in template set T0547 225 :EQFTMIHFH 1xtpA 157 :NTYDLIVIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64105 # 1nt2A.225.124 read from T0547.t04.many.frag # found chain 1nt2A in template set Warning: unaligning (T0547)H233 (1nt2A)D133 because D (zeta) conformation "forbidden" or filtered. T0547 225 :EQFTMIHF 1nt2A 125 :EKVDLIYQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=64106 # 1em8A.225.107 read from T0547.t04.many.frag # found chain 1em8A in template set T0547 225 :EQFTMIHFH 1em8A 108 :TAFTEVVDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64107 # 1wpnA.225.86 read from T0547.t04.many.frag # found chain 1wpnA in training set T0547 225 :EQFTMIHFH 1wpnA 87 :EEVQVLEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64108 # 1xpkC.225.68 read from T0547.t04.many.frag # found chain 1xpkC in template set T0547 225 :EQFTMIHFH 1xpkC 69 :KKIGMVIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64109 # 1tvlA.225.89 read from T0547.t04.many.frag # found chain 1tvlA in template set T0547 225 :EQFTMIHFH 1tvlA 88 :KNIGLVGTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64110 # 1ynpA.225.130 read from T0547.t04.many.frag # found chain 1ynpA in training set T0547 225 :EQFTMIHFH 1ynpA 111 :DYIDLYQLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=64111 # 1dp4A.225.233 read from T0547.t04.many.frag # found chain 1dp4A in template set T0547 225 :EQFTMIHFH 1dp4A 234 :EDYVFFHLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64112 # 2bduA.225.41 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 225 :EQFTMIHFH 2bduA 42 :AKLQIITDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64113 # 1qlmA.225.161 read from T0547.t04.many.frag # found chain 1qlmA in template set T0547 225 :EQFTMIHFH 1qlmA 162 :ENLYLLVAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=64114 # 2bogX.225.178 read from T0547.t04.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)M229 (2bogX)G183 because Y (epsilon') conformation "forbidden" or filtered. T0547 225 :EQFT 2bogX 179 :NSAH T0547 230 :IHFH 2bogX 184 :IATN Number of specific fragments extracted= 2 number of extra gaps= 1 total=64116 # 1y42X.225.94 read from T0547.t04.many.frag # found chain 1y42X in template set T0547 225 :EQFTMIHFH 1y42X 126 :EGYKAFTLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64117 # 1xdzA.225.139 read from T0547.t04.many.frag # found chain 1xdzA in training set T0547 225 :EQFTMIHFH 1xdzA 139 :ESYDIVTAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64118 # 1ysjA.225.172 read from T0547.t04.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)F232 (1ysjA)G156 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE in next template residue (1ysjA)H158 T0547 225 :EQFTMIH 1ysjA 149 :NGVSAIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=64119 # 7odcA.226.189 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)M229 (7odcA)G193 because Y (epsilon') conformation "forbidden" or filtered. T0547 226 :QFT 7odcA 190 :DVI T0547 230 :IHFHL 7odcA 194 :VSFHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=64121 # 1knwA.226.183 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)M229 (1knwA)G187 because Y (epsilon') conformation "forbidden" or filtered. T0547 226 :QFT 1knwA 184 :QLV T0547 230 :IHFHL 1knwA 188 :IHMHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=64123 # 1t71A.226.150 read from T0547.t04.many.frag # found chain 1t71A in template set T0547 226 :QFTMIHFHL 1t71A 151 :DLHIVDFHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64124 # 2apjA.226.191 read from T0547.t04.many.frag # found chain 2apjA in training set T0547 226 :QFTMIHFHL 2apjA 192 :SLPIIQVAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64125 # 1jqnA.226.573 read from T0547.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)H231 (1jqnA)H579 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1jqnA)G582 because S (epsilon) conformation "forbidden" or filtered. T0547 226 :QFTMI 1jqnA 574 :ELTLF T0547 232 :FH 1jqnA 580 :GR Number of specific fragments extracted= 2 number of extra gaps= 2 total=64127 # 2axoA.226.71 read from T0547.t04.many.frag # found chain 2axoA in training set T0547 226 :QFTMIHFHL 2axoA 72 :DVVGLSYHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64128 # 1su8A.226.435 read from T0547.t04.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)M229 (1su8A)G439 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1su8A)A444 because Y (epsilon') conformation "forbidden" or filtered. T0547 226 :QFT 1su8A 436 :NIR T0547 230 :IHFH 1su8A 440 :VCLF Number of specific fragments extracted= 2 number of extra gaps= 2 total=64130 # 1ox0A.226.314 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)L234 (1ox0A)G304 because L (left) conformation "forbidden" or filtered. T0547 226 :QFTMIHFH 1ox0A 296 :QVAYVNAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=64131 # 1x3mA.226.91 read from T0547.t04.many.frag # found chain 1x3mA in template set T0547 226 :QFTMIHFHL 1x3mA 79 :SVALIGHRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64132 # 1xg4A.226.150 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 226 :QFTMIHFHL 1xg4A 152 :DFVIMARTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64133 # 1xtpA.226.157 read from T0547.t04.many.frag # found chain 1xtpA in template set T0547 226 :QFTMIHFHL 1xtpA 158 :TYDLIVIQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=64134 # 1oltA.226.203 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)F227 (1oltA)S205 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1oltA)I208 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1oltA)I208 T0547 226 :Q 1oltA 204 :T T0547 228 :T 1oltA 206 :T T0547 231 :HFHL 1oltA 209 :DLIY Number of specific fragments extracted= 3 number of extra gaps= 2 total=64137 # 1t7lA.226.303 read from T0547.t04.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)H233 (1t7lA)V279 because G (3-10) conformation "forbidden" or filtered. T0547 226 :QFTMIHF 1t7lA 272 :DKKLVAG T0547 234 :L 1t7lA 280 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=64139 # 1rljA.226.72 read from T0547.t04.many.frag # found chain 1rljA in template set T0547 226 :QFTMIHFHL 1rljA 64 :LLLGVAASG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64140 # 1xpkC.226.69 read from T0547.t04.many.frag # found chain 1xpkC in template set T0547 226 :QFTMIHFHL 1xpkC 70 :KIGMVIVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64141 # 1y0kA.226.137 read from T0547.t04.many.frag # found chain 1y0kA in training set T0547 226 :QFTMIHFHL 1y0kA 138 :ELDLLAFVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64142 # 1wuiS.226.103 read from T0547.t04.many.frag # found chain 1wuiS in training set Warning: unaligning (T0547)L234 (1wuiS)G112 because S (epsilon) conformation "forbidden" or filtered. T0547 226 :QFTMIHFH 1wuiS 104 :KAQAVIAY Number of specific fragments extracted= 1 number of extra gaps= 1 total=64143 # 1ynpA.226.131 read from T0547.t04.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)H233 (1ynpA)H119 because E (beta_S) conformation "forbidden" or filtered. T0547 226 :QFTMIHF 1ynpA 112 :YIDLYQL T0547 234 :L 1ynpA 120 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=64145 # 1qsgA.226.86 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)Q226 (1qsgA)K84 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F227 (1qsgA)F85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (1qsgA)G87 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)I230 (1qsgA)F88 because Y (epsilon') conformation "forbidden" or filtered. T0547 228 :T 1qsgA 86 :D T0547 231 :HFHL 1qsgA 89 :VHSI Number of specific fragments extracted= 2 number of extra gaps= 2 total=64147 # 1qyrA.226.115 read from T0547.t04.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)M229 (1qyrA)D135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H231 (1qyrA)H137 because D (zeta) conformation "forbidden" or filtered. T0547 226 :QFT 1qyrA 132 :AIA T0547 230 :I 1qyrA 136 :M T0547 232 :FHL 1qyrA 138 :FML Number of specific fragments extracted= 3 number of extra gaps= 2 total=64150 # 1y42X.226.95 read from T0547.t04.many.frag # found chain 1y42X in template set Warning: unaligning (T0547)Q226 (1y42X)G127 because T (delta_L) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1y42X 128 :YKAFTLIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=64151 # 2bduA.226.42 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 226 :QFTMIHFHL 2bduA 43 :KLQIITDFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64152 # 1hp1A.226.184 read from T0547.t04.many.frag # found chain 1hp1A in training set T0547 226 :QFTMIHFHL 1hp1A 210 :DIIIAATHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=64153 # 1dp4A.226.234 read from T0547.t04.many.frag # found chain 1dp4A in template set T0547 226 :QFTMIHFHL 1dp4A 235 :DYVFFHLDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64154 # 1nmoA.226.163 read from T0547.t04.many.frag # found chain 1nmoA in template set T0547 226 :QFTMIHFHL 1nmoA 164 :VVQRVAWCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64155 # 1l8aA.226.381 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)Q226 (1l8aA)K382 because Y (epsilon') conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1l8aA 383 :ATVILAHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=64156 # 1nt2A.226.125 read from T0547.t04.many.frag # found chain 1nt2A in template set T0547 226 :QFTMIHFHL 1nt2A 126 :KVDLIYQDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64157 # 2aebA.226.268 read from T0547.t04.many.frag # found chain 2aebA in training set T0547 226 :QFTMIHFHL 2aebA 269 :LLSGLDIME Number of specific fragments extracted= 1 number of extra gaps= 0 total=64158 # 1qvzA.226.97 read from T0547.t04.many.frag # found chain 1qvzA in template set Warning: unaligning (T0547)L234 (1qvzA)A106 because Y (epsilon') conformation "forbidden" or filtered. T0547 226 :QFTMIHFH 1qvzA 98 :DYQIFMAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=64159 # 1cnv.226.121 read from T0547.t04.many.frag # found chain 1cnv in training set T0547 226 :QFTMIHFHL 1cnv 122 :ALDGIHFDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64160 # 7odcA.227.190 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)M229 (7odcA)G193 because Y (epsilon') conformation "forbidden" or filtered. T0547 227 :FT 7odcA 191 :VI T0547 230 :IHFHLG 7odcA 194 :VSFHVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=64162 # 1knwA.227.184 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)M229 (1knwA)G187 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1knwA)G193 because S (epsilon) conformation "forbidden" or filtered. T0547 227 :FT 1knwA 185 :LV T0547 230 :IHFHL 1knwA 188 :IHMHI Number of specific fragments extracted= 2 number of extra gaps= 2 total=64164 # 1t71A.227.151 read from T0547.t04.many.frag # found chain 1t71A in template set T0547 227 :FTMIHFHLG 1t71A 152 :LHIVDFHAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64165 # 2apjA.227.192 read from T0547.t04.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)H233 (2apjA)A199 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (2apjA)A201 because G (3-10) conformation "forbidden" or filtered. T0547 227 :FTMIHF 2apjA 193 :LPIIQV T0547 234 :L 2apjA 200 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=64167 # 2axoA.227.72 read from T0547.t04.many.frag # found chain 2axoA in training set T0547 227 :FTMIHFHLG 2axoA 73 :VVGLSYHVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64168 # 1jqnA.227.574 read from T0547.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)L234 (1jqnA)G582 because S (epsilon) conformation "forbidden" or filtered. T0547 227 :FTMIHFH 1jqnA 575 :LTLFHGR T0547 235 :G 1jqnA 583 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=64170 # 1su8A.227.436 read from T0547.t04.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)M229 (1su8A)G439 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1su8A)A444 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 T0547 227 :FT 1su8A 437 :IR T0547 230 :IHFH 1su8A 440 :VCLF Number of specific fragments extracted= 2 number of extra gaps= 2 total=64172 # 1xg4A.227.151 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 227 :FTMIHFHLG 1xg4A 153 :FVIMARTDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64173 # 1xtpA.227.158 read from T0547.t04.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)G235 (1xtpA)T167 because G (3-10) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1xtpA 159 :YDLIVIQW Number of specific fragments extracted= 1 number of extra gaps= 1 total=64174 # 1oltA.227.204 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)F227 (1oltA)S205 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1oltA)I208 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1oltA)I208 Warning: unaligning (T0547)H231 (1oltA)D209 because P (beta_P) conformation "forbidden" or filtered. T0547 228 :T 1oltA 206 :T T0547 232 :FHLG 1oltA 210 :LIYG Number of specific fragments extracted= 2 number of extra gaps= 2 total=64176 # 1ox0A.227.315 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)H233 (1ox0A)H303 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1ox0A)G304 because L (left) conformation "forbidden" or filtered. T0547 227 :FTMIHF 1ox0A 297 :VAYVNA T0547 235 :G 1ox0A 305 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=64178 # 1wehA.227.0 read from T0547.t04.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)F227 because first residue in template chain is (1wehA)M1 Warning: unaligning (T0547)L234 (1wehA)V8 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1wehA)S9 because P (beta_P) conformation "forbidden" or filtered. T0547 228 :TMIHFH 1wehA 2 :RLLAVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=64179 # 7a3hA.227.94 read from T0547.t04.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 T0547 227 :FTMIH 7a3hA 95 :YVIID T0547 234 :LG 7a3hA 102 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=64181 # 2aebA.227.269 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)L234 (2aebA)E277 because T (delta_L) conformation "forbidden" or filtered. T0547 227 :FTMIHFH 2aebA 270 :LSGLDIM T0547 235 :G 2aebA 278 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=64183 # 1x3mA.227.92 read from T0547.t04.many.frag # found chain 1x3mA in template set T0547 227 :FTMIHFHLG 1x3mA 80 :VALIGHRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64184 # 1rljA.227.73 read from T0547.t04.many.frag # found chain 1rljA in template set Warning: unaligning (T0547)M229 (1rljA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1rljA)G72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1rljA)N73 because E (beta_S) conformation "forbidden" or filtered. T0547 227 :FT 1rljA 65 :LL T0547 230 :IHFH 1rljA 68 :VAAS Number of specific fragments extracted= 2 number of extra gaps= 2 total=64186 # 1t7lA.227.304 read from T0547.t04.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)G235 (1t7lA)N281 because P (beta_P) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1t7lA 273 :KKLVAGVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=64187 # 1jfxA.227.57 read from T0547.t04.many.frag # found chain 1jfxA in training set Warning: unaligning (T0547)M229 (1jfxA)G60 because Y (epsilon') conformation "forbidden" or filtered. T0547 227 :FT 1jfxA 58 :IR T0547 230 :IHFHLG 1jfxA 61 :AYHFAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=64189 # 2bduA.227.43 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 227 :FTMIHFHLG 2bduA 44 :LQIITDFDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=64190 # 1xpkC.227.70 read from T0547.t04.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)G235 (1xpkC)E79 because G (3-10) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1xpkC 71 :IGMVIVAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=64191 # 1qsgA.227.87 read from T0547.t04.many.frag # found chain 1qsgA in training set T0547 227 :FTMIHFHLG 1qsgA 85 :FDGFVHSIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64192 # 1ynpA.227.132 read from T0547.t04.many.frag # found chain 1ynpA in training set T0547 227 :FTMIHFHLG 1ynpA 113 :IDLYQLHGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64193 # 1y42X.227.96 read from T0547.t04.many.frag # found chain 1y42X in template set T0547 227 :FTMIHFHLG 1y42X 128 :YKAFTLIGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64194 # 1y0kA.227.138 read from T0547.t04.many.frag # found chain 1y0kA in training set Warning: unaligning (T0547)L234 (1y0kA)N146 because D (zeta) conformation "forbidden" or filtered. T0547 227 :FTMIHFH 1y0kA 139 :LDLLAFV T0547 235 :G 1y0kA 147 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=64196 # 1nmoA.227.164 read from T0547.t04.many.frag # found chain 1nmoA in template set T0547 227 :FTMIHFHLG 1nmoA 165 :VQRVAWCTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64197 # 1hp1A.227.185 read from T0547.t04.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)G235 (1hp1A)G219 because S (epsilon) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1hp1A 211 :IIIAATHM Number of specific fragments extracted= 1 number of extra gaps= 1 total=64198 # 1dp4A.227.235 read from T0547.t04.many.frag # found chain 1dp4A in template set Warning: unaligning (T0547)G235 (1dp4A)F244 because G (3-10) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1dp4A 236 :YVFFHLDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=64199 # 2ajtA.227.72 read from T0547.t04.many.frag # found chain 2ajtA in template set Warning: unaligning (T0547)M229 (2ajtA)G75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2ajtA)H81 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2ajtA)H81 T0547 227 :FT 2ajtA 73 :CA T0547 230 :IHFH 2ajtA 76 :LVVW Number of specific fragments extracted= 2 number of extra gaps= 2 total=64201 # 1l8aA.227.382 read from T0547.t04.many.frag # found chain 1l8aA in template set T0547 227 :FTMIHFHLG 1l8aA 383 :ATVILAHTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64202 # 1q74A.227.129 read from T0547.t04.many.frag # found chain 1q74A in training set T0547 227 :FTMIHFHLG 1q74A 130 :PHVVVTYDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=64203 # 7odcA.228.191 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)M229 (7odcA)G193 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (7odcA)G199 because S (epsilon) conformation "forbidden" or filtered. T0547 228 :T 7odcA 192 :I T0547 230 :IHFHL 7odcA 194 :VSFHV T0547 236 :S 7odcA 200 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=64206 # 1knwA.228.185 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)H233 (1knwA)H191 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1knwA)G193 because S (epsilon) conformation "forbidden" or filtered. T0547 228 :TMIHF 1knwA 186 :VGIHM T0547 234 :L 1knwA 192 :I T0547 236 :S 1knwA 194 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=64209 # 2apjA.228.193 read from T0547.t04.many.frag # found chain 2apjA in training set T0547 228 :TMIHFHLGS 2apjA 194 :PIIQVAIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64210 # 1t71A.228.152 read from T0547.t04.many.frag # found chain 1t71A in template set T0547 228 :TMIHFHLGS 1t71A 153 :HIVDFHAET Number of specific fragments extracted= 1 number of extra gaps= 0 total=64211 # 1wehA.228.1 read from T0547.t04.many.frag # found chain 1wehA in training set T0547 228 :TMIHFHLGS 1wehA 2 :RLLAVFVSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64212 # 2axoA.228.73 read from T0547.t04.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)H233 (2axoA)H79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (2axoA)D81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (2axoA)Y82 because G (3-10) conformation "forbidden" or filtered. T0547 228 :TMIHF 2axoA 74 :VGLSY T0547 234 :L 2axoA 80 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=64214 # 1su8A.228.437 read from T0547.t04.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)M229 (1su8A)G439 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1su8A)A444 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)C446 T0547 228 :T 1su8A 438 :R T0547 230 :IHFH 1su8A 440 :VCLF Number of specific fragments extracted= 2 number of extra gaps= 2 total=64216 # 1xg4A.228.152 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 228 :TMIHFHLGS 1xg4A 154 :VIMARTDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64217 # 1ox0A.228.316 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 228 :TMIHFHLGS 1ox0A 298 :AYVNAHGTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64218 # 1oltA.228.205 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1oltA)I208 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1oltA)I208 T0547 228 :T 1oltA 206 :T T0547 231 :HFHLGS 1oltA 209 :DLIYGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=64220 # 7a3hA.228.95 read from T0547.t04.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 T0547 228 :TMIH 7a3hA 96 :VIID T0547 234 :LGS 7a3hA 102 :ILS Number of specific fragments extracted= 2 number of extra gaps= 1 total=64222 # 1jqnA.228.575 read from T0547.t04.many.frag # found chain 1jqnA in template set T0547 228 :TMIHFHLGS 1jqnA 576 :TLFHGRGGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64223 # 1xtpA.228.159 read from T0547.t04.many.frag # found chain 1xtpA in template set T0547 228 :TMIHFHLGS 1xtpA 160 :DLIVIQWTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64224 # 1jfxA.228.58 read from T0547.t04.many.frag # found chain 1jfxA in training set Warning: unaligning (T0547)M229 (1jfxA)G60 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1jfxA)R66 because D (zeta) conformation "forbidden" or filtered. T0547 228 :T 1jfxA 59 :R T0547 230 :IHFHL 1jfxA 61 :AYHFA T0547 236 :S 1jfxA 67 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=64227 # 1y42X.228.97 read from T0547.t04.many.frag # found chain 1y42X in template set T0547 228 :TMIHFHLGS 1y42X 129 :KAFTLIGGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64228 # 1q74A.228.130 read from T0547.t04.many.frag # found chain 1q74A in training set T0547 228 :TMIHFHLGS 1q74A 131 :HVVVTYDPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64229 # 2aebA.228.270 read from T0547.t04.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)L234 (2aebA)E277 because T (delta_L) conformation "forbidden" or filtered. T0547 228 :TMIHFH 2aebA 271 :SGLDIM T0547 235 :GS 2aebA 278 :VN Number of specific fragments extracted= 2 number of extra gaps= 1 total=64231 # 1ynpA.228.133 read from T0547.t04.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)H233 (1ynpA)H119 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1ynpA)G120 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1ynpA)G121 because P (beta_P) conformation "forbidden" or filtered. T0547 228 :TMIHF 1ynpA 114 :DLYQL T0547 236 :S 1ynpA 122 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=64233 # 1uuyA.228.72 read from T0547.t04.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)L234 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. T0547 228 :TMIHFH 1uuyA 73 :DLILTL T0547 235 :GS 1uuyA 80 :GT Number of specific fragments extracted= 2 number of extra gaps= 1 total=64235 # 1xpkC.228.71 read from T0547.t04.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)L234 (1xpkC)T78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1xpkC)E79 because G (3-10) conformation "forbidden" or filtered. T0547 228 :TMIHFH 1xpkC 72 :GMVIVA T0547 236 :S 1xpkC 80 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=64237 # 2blnA.228.77 read from T0547.t04.many.frag # found chain 2blnA in training set T0547 228 :TMIHFHLGS 2blnA 78 :VIFSFYYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=64238 # 1dp4A.228.236 read from T0547.t04.many.frag # found chain 1dp4A in template set Warning: unaligning (T0547)G235 (1dp4A)F244 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1dp4A)G245 because L (left) conformation "forbidden" or filtered. T0547 228 :TMIHFHL 1dp4A 237 :VFFHLDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=64239 # 1onwA.228.195 read from T0547.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)T228 (1onwA)G196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1onwA)G203 because P (beta_P) conformation "forbidden" or filtered. T0547 229 :MIHFHL 1onwA 197 :VTVFHM T0547 236 :S 1onwA 204 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=64241 # 1nmoA.228.165 read from T0547.t04.many.frag # found chain 1nmoA in template set Warning: unaligning (T0547)F232 (1nmoA)W170 because Y (epsilon') conformation "forbidden" or filtered. T0547 228 :TMIH 1nmoA 166 :QRVA T0547 233 :HLGS 1nmoA 171 :CTGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=64243 # 2d81A.228.90 read from T0547.t04.many.frag # found chain 2d81A in training set T0547 228 :TMIHFHLGS 2d81A 111 :RKIYMWTGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64244 # 1x3mA.228.93 read from T0547.t04.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)H233 (1x3mA)R86 because P (beta_P) conformation "forbidden" or filtered. T0547 228 :TMIHF 1x3mA 81 :ALIGH T0547 234 :LGS 1x3mA 87 :IAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=64246 # 1y0kA.228.139 read from T0547.t04.many.frag # found chain 1y0kA in training set T0547 228 :TMIHFHLGS 1y0kA 140 :DLLAFVNLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64247 # 1hp1A.228.186 read from T0547.t04.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)H233 (1hp1A)H217 because D (zeta) conformation "forbidden" or filtered. T0547 228 :TMIHF 1hp1A 212 :IIAAT T0547 234 :LGS 1hp1A 218 :MGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=64249 # 2ajtA.228.73 read from T0547.t04.many.frag # found chain 2ajtA in template set Warning: unaligning (T0547)M229 (2ajtA)G75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2ajtA)H81 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2ajtA)H81 T0547 228 :T 2ajtA 74 :A T0547 230 :IHFH 2ajtA 76 :LVVW T0547 236 :S 2ajtA 82 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=64252 # 1t7lA.228.305 read from T0547.t04.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)G235 (1t7lA)N281 because P (beta_P) conformation "forbidden" or filtered. T0547 228 :TMIHFHL 1t7lA 274 :KLVAGVI T0547 236 :S 1t7lA 282 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=64254 # 7odcA.229.192 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 229 :MIHFHLGSQ 7odcA 193 :GVSFHVGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64255 # 1knwA.229.186 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)M229 (1knwA)G187 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 (1knwA)H191 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1knwA)G193 because S (epsilon) conformation "forbidden" or filtered. T0547 230 :IHF 1knwA 188 :IHM T0547 234 :L 1knwA 192 :I T0547 236 :SQ 1knwA 194 :SG Number of specific fragments extracted= 3 number of extra gaps= 3 total=64258 # 1wehA.229.2 read from T0547.t04.many.frag # found chain 1wehA in training set T0547 229 :MIHFHLGSQ 1wehA 3 :LLAVFVSSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64259 # 2apjA.229.194 read from T0547.t04.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)G235 (2apjA)A201 because G (3-10) conformation "forbidden" or filtered. T0547 229 :MIHFHL 2apjA 195 :IIQVAI T0547 236 :SQ 2apjA 202 :SG Number of specific fragments extracted= 2 number of extra gaps= 1 total=64261 # 2axoA.229.74 read from T0547.t04.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)G235 (2axoA)D81 because G (3-10) conformation "forbidden" or filtered. T0547 229 :MIHFHL 2axoA 75 :GLSYHV T0547 236 :SQ 2axoA 82 :YW Number of specific fragments extracted= 2 number of extra gaps= 1 total=64263 # 1xtpA.229.160 read from T0547.t04.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)L234 (1xtpA)W166 because L (left) conformation "forbidden" or filtered. T0547 229 :MIHFH 1xtpA 161 :LIVIQ T0547 235 :GSQ 1xtpA 167 :TAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=64265 # 1t71A.229.153 read from T0547.t04.many.frag # found chain 1t71A in template set Warning: unaligning (T0547)S236 (1t71A)T161 because P (beta_P) conformation "forbidden" or filtered. T0547 229 :MIHFHLG 1t71A 154 :IVDFHAE T0547 237 :Q 1t71A 162 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=64267 # 7a3hA.229.96 read from T0547.t04.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)N106 T0547 229 :MIH 7a3hA 97 :IID T0547 234 :LGS 7a3hA 102 :ILS Number of specific fragments extracted= 2 number of extra gaps= 2 total=64269 # 1su8A.229.438 read from T0547.t04.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)M229 (1su8A)G439 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1su8A)A444 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)C446 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)N447 T0547 230 :IHFH 1su8A 440 :VCLF Number of specific fragments extracted= 1 number of extra gaps= 2 total=64270 # 1ynpA.229.134 read from T0547.t04.many.frag # found chain 1ynpA in training set T0547 229 :MIHFHLGSQ 1ynpA 115 :LYQLHGGTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64271 # 1ox0A.229.317 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)L234 (1ox0A)G304 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1ox0A)S306 because L (left) conformation "forbidden" or filtered. T0547 229 :MIHFH 1ox0A 299 :YVNAH T0547 235 :G 1ox0A 305 :T T0547 237 :Q 1ox0A 307 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=64274 # 1oltA.229.206 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1oltA)I208 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1oltA)I208 T0547 231 :HFHLGSQ 1oltA 209 :DLIYGLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=64275 # 1jfxA.229.59 read from T0547.t04.many.frag # found chain 1jfxA in training set Warning: unaligning (T0547)M229 (1jfxA)G60 because Y (epsilon') conformation "forbidden" or filtered. T0547 230 :IHFHLGSQ 1jfxA 61 :AYHFARPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=64276 # 1y42X.229.98 read from T0547.t04.many.frag # found chain 1y42X in template set T0547 229 :MIHFHLGSQ 1y42X 130 :AFTLIGGST Number of specific fragments extracted= 1 number of extra gaps= 0 total=64277 # 1xg4A.229.153 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 229 :MIHFHLGSQ 1xg4A 155 :IMARTDALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64278 # 1uuyA.229.73 read from T0547.t04.many.frag # found chain 1uuyA in training set T0547 229 :MIHFHLGSQ 1uuyA 74 :LILTLGGTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64279 # 1q74A.229.131 read from T0547.t04.many.frag # found chain 1q74A in training set Warning: unaligning (T0547)Q237 (1q74A)G140 because L (left) conformation "forbidden" or filtered. T0547 229 :MIHFHLGS 1q74A 132 :VVVTYDPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=64280 # 1onwA.229.196 read from T0547.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)G235 (1onwA)G203 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1onwA)D204 because G (3-10) conformation "forbidden" or filtered. T0547 229 :MIHFHL 1onwA 197 :VTVFHM T0547 237 :Q 1onwA 205 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=64282 # 2bh1A.229.52 read from T0547.t04.many.frag # found chain 2bh1A in template set T0547 229 :MIHFHLGSQ 2bh1A 53 :VVVLLAASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64283 # 2d81A.229.91 read from T0547.t04.many.frag # found chain 2d81A in training set T0547 229 :MIHFHLGSQ 2d81A 112 :KIYMWTGSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64284 # 2blnA.229.78 read from T0547.t04.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)H233 (2blnA)Y83 because L (left) conformation "forbidden" or filtered. T0547 229 :MIHF 2blnA 79 :IFSF T0547 234 :LGSQ 2blnA 84 :YRHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=64286 # 1jqnA.229.576 read from T0547.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)H231 (1jqnA)H579 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1jqnA)G583 because S (epsilon) conformation "forbidden" or filtered. T0547 229 :MI 1jqnA 577 :LF T0547 232 :FHL 1jqnA 580 :GRG T0547 236 :SQ 1jqnA 584 :SI Number of specific fragments extracted= 3 number of extra gaps= 2 total=64289 # 1xpkC.229.72 read from T0547.t04.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)L234 (1xpkC)T78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1xpkC)E79 because G (3-10) conformation "forbidden" or filtered. T0547 229 :MIHFH 1xpkC 73 :MVIVA T0547 236 :SQ 1xpkC 80 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=64291 # 1o97D.229.58 read from T0547.t04.many.frag # found chain 1o97D in training set T0547 229 :MIHFHLGSQ 1o97D 59 :ELVVVKGSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64292 # 2nlrA.229.159 read from T0547.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)S236 (2nlrA)S167 because Y (epsilon') conformation "forbidden" or filtered. T0547 229 :MIHFHLG 2nlrA 160 :VLSFVAP T0547 237 :Q 2nlrA 168 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=64294 # 1nmoA.229.166 read from T0547.t04.many.frag # found chain 1nmoA in template set T0547 229 :MIHFHLGSQ 1nmoA 167 :RVAWCTGGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64295 # 1l5oA.229.62 read from T0547.t04.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)G235 (1l5oA)D69 because P (beta_P) conformation "forbidden" or filtered. T0547 229 :MIHFHL 1l5oA 63 :VLVMCA T0547 236 :SQ 1l5oA 70 :HG Number of specific fragments extracted= 2 number of extra gaps= 1 total=64297 # 2ajtA.229.74 read from T0547.t04.many.frag # found chain 2ajtA in template set Warning: unaligning (T0547)M229 (2ajtA)G75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2ajtA)H81 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2ajtA)H81 T0547 230 :IHFH 2ajtA 76 :LVVW T0547 236 :SQ 2ajtA 82 :TF Number of specific fragments extracted= 2 number of extra gaps= 2 total=64299 1w9hA expands to /projects/compbio/data/pdb/1w9h.pdb.gz 1w9hA:# 1w9hA.229.247 read from T0547.t04.many.frag # adding 1w9hA to template set # found chain 1w9hA in template set Warning: unaligning (T0547)H233 (1w9hA)H252 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1w9hA)S254 because Y (epsilon') conformation "forbidden" or filtered. T0547 229 :MIHF 1w9hA 248 :KLTL T0547 234 :L 1w9hA 253 :V T0547 236 :SQ 1w9hA 255 :GK Number of specific fragments extracted= 3 number of extra gaps= 2 total=64302 # 1i4wA.229.143 read from T0547.t04.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)G235 (1i4wA)V138 because G (3-10) conformation "forbidden" or filtered. T0547 229 :MIHFHL 1i4wA 132 :FLTVAN T0547 236 :SQ 1i4wA 139 :TG Number of specific fragments extracted= 2 number of extra gaps= 1 total=64304 # 7odcA.230.193 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G235 (7odcA)G199 because S (epsilon) conformation "forbidden" or filtered. T0547 230 :IHFHL 7odcA 194 :VSFHV T0547 236 :SQI 7odcA 200 :SGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=64306 # 1knwA.230.187 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I238 (1knwA)V196 because G (3-10) conformation "forbidden" or filtered. T0547 230 :IHFHLGSQ 1knwA 188 :IHMHIGSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=64307 # 1wehA.230.3 read from T0547.t04.many.frag # found chain 1wehA in training set T0547 230 :IHFHLGSQI 1wehA 4 :LAVFVSSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64308 # 2apjA.230.195 read from T0547.t04.many.frag # found chain 2apjA in training set T0547 230 :IHFHLGSQI 2apjA 196 :IQVAIASGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64309 # 1xtpA.230.161 read from T0547.t04.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)L234 (1xtpA)W166 because L (left) conformation "forbidden" or filtered. T0547 230 :IHFH 1xtpA 162 :IVIQ T0547 235 :GSQI 1xtpA 167 :TAIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=64311 # 1q74A.230.132 read from T0547.t04.many.frag # found chain 1q74A in training set Warning: unaligning (T0547)Q237 (1q74A)G140 because L (left) conformation "forbidden" or filtered. T0547 230 :IHFHLGS 1q74A 133 :VVTYDPN T0547 238 :I 1q74A 141 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=64313 # 2d81A.230.92 read from T0547.t04.many.frag # found chain 2d81A in training set T0547 230 :IHFHLGSQI 2d81A 113 :IYMWTGSSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64314 # 1y42X.230.99 read from T0547.t04.many.frag # found chain 1y42X in template set T0547 230 :IHFHLGSQI 1y42X 131 :FTLIGGSTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64315 # 1oltA.230.207 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1oltA)I208 Warning: unaligning (T0547)Q237 (1oltA)P215 because P (beta_P) conformation "forbidden" or filtered. T0547 231 :HFHLGS 1oltA 209 :DLIYGL T0547 238 :I 1oltA 216 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=64317 # 1uf3A.230.65 read from T0547.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)Q237 (1uf3A)Q73 because G (3-10) conformation "forbidden" or filtered. T0547 230 :IHFHLGS 1uf3A 66 :TAYVPGP T0547 238 :I 1uf3A 74 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=64319 # 7a3hA.230.97 read from T0547.t04.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)N106 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)N106 T0547 230 :IH 7a3hA 98 :ID T0547 234 :LGS 7a3hA 102 :ILS Number of specific fragments extracted= 2 number of extra gaps= 2 total=64321 # 1uuyA.230.74 read from T0547.t04.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)L234 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. T0547 230 :IHFH 1uuyA 75 :ILTL T0547 235 :GSQI 1uuyA 80 :GTGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=64323 # 1jfxA.230.60 read from T0547.t04.many.frag # found chain 1jfxA in training set Warning: unaligning (T0547)G235 (1jfxA)R66 because D (zeta) conformation "forbidden" or filtered. T0547 230 :IHFHL 1jfxA 61 :AYHFA T0547 236 :SQI 1jfxA 67 :PNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=64325 # 2bh1A.230.53 read from T0547.t04.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)H231 (2bh1A)V55 because P (beta_P) conformation "forbidden" or filtered. T0547 230 :I 2bh1A 54 :V T0547 232 :FHLGSQI 2bh1A 56 :LLAASDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=64327 # 2axoA.230.75 read from T0547.t04.many.frag # found chain 2axoA in training set T0547 230 :IHFHLGSQI 2axoA 76 :LSYHVDYWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64328 # 1su8A.230.439 read from T0547.t04.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)L234 (1su8A)A444 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)C446 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)N447 T0547 230 :IHFH 1su8A 440 :VCLF T0547 238 :I 1su8A 448 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=64330 # 1ox0A.230.318 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)L234 (1ox0A)G304 because L (left) conformation "forbidden" or filtered. T0547 230 :IHFH 1ox0A 300 :VNAH T0547 235 :GSQI 1ox0A 305 :TSTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=64332 # 1onwA.230.197 read from T0547.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)Q237 (1onwA)S205 because P (beta_P) conformation "forbidden" or filtered. T0547 230 :IHFHLGS 1onwA 198 :TVFHMGD T0547 238 :I 1onwA 206 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=64334 # 1o97D.230.59 read from T0547.t04.many.frag # found chain 1o97D in training set T0547 230 :IHFHLGSQI 1o97D 60 :LVVVKGSSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64335 # 1w9hA.230.248 read from T0547.t04.many.frag # found chain 1w9hA in template set T0547 230 :IHFHLGSQI 1w9hA 249 :LTLHVSGKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64336 # 2nlrA.230.160 read from T0547.t04.many.frag # found chain 2nlrA in training set T0547 230 :IHFHLGSQI 2nlrA 161 :LSFVAPSAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64337 # 1l5oA.230.63 read from T0547.t04.many.frag # found chain 1l5oA in training set T0547 230 :IHFHLGSQI 1l5oA 64 :LVMCADHGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64338 # 1k3rA.230.6 read from T0547.t04.many.frag # found chain 1k3rA in template set Warning: unaligning (T0547)I238 (1k3rA)T15 because G (3-10) conformation "forbidden" or filtered. T0547 230 :IHFHLGSQ 1k3rA 7 :SLFIPDSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=64339 # 1sr9A.230.248 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)A253 Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)A253 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)V255 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)V255 T0547 230 :IHF 1sr9A 249 :FNL T0547 237 :QI 1sr9A 256 :EM Number of specific fragments extracted= 2 number of extra gaps= 1 total=64341 # 1rkxA.230.82 read from T0547.t04.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)S236 (1rkxA)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 230 :IHFHLG 1rkxA 83 :IVFHMA T0547 237 :QI 1rkxA 90 :QP Number of specific fragments extracted= 2 number of extra gaps= 1 total=64343 # 1xpkC.230.73 read from T0547.t04.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)L234 (1xpkC)T78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1xpkC)A81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1xpkC)V82 because G (3-10) conformation "forbidden" or filtered. T0547 230 :IHFH 1xpkC 74 :VIVA T0547 235 :GS 1xpkC 79 :ES Number of specific fragments extracted= 2 number of extra gaps= 2 total=64345 # 1t71A.230.154 read from T0547.t04.many.frag # found chain 1t71A in template set T0547 230 :IHFHLGSQI 1t71A 155 :VDFHAETTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64346 # 1ynpA.230.135 read from T0547.t04.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)L234 (1ynpA)G120 because T (delta_L) conformation "forbidden" or filtered. T0547 230 :IHFH 1ynpA 116 :YQLH T0547 235 :GSQI 1ynpA 121 :GTID Number of specific fragments extracted= 2 number of extra gaps= 1 total=64348 1ekjA expands to /projects/compbio/data/pdb/1ekj.pdb.gz 1ekjA:# 1ekjA.230.47 read from T0547.t04.many.frag # adding 1ekjA to template set # found chain 1ekjA in template set Warning: unaligning (T0547)I238 (1ekjA)R164 because G (3-10) conformation "forbidden" or filtered. T0547 230 :IHFHLGSQ 1ekjA 156 :MVFACSDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=64349 # 1jqnA.230.577 read from T0547.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)H233 (1jqnA)R581 because P (beta_P) conformation "forbidden" or filtered. T0547 230 :IHF 1jqnA 578 :FHG T0547 234 :LGSQI 1jqnA 582 :GGSIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=64351 # 7odcA.231.194 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 231 :HFHLGSQIT 7odcA 195 :SFHVGSGCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64352 # 2apjA.231.196 read from T0547.t04.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)I238 (2apjA)G204 because S (epsilon) conformation "forbidden" or filtered. T0547 231 :HFHLGSQ 2apjA 197 :QVAIASG T0547 239 :T 2apjA 205 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=64354 # 1uf3A.231.66 read from T0547.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)F232 (1uf3A)Y68 because Y (epsilon') conformation "forbidden" or filtered. T0547 231 :H 1uf3A 67 :A T0547 233 :HLGSQIT 1uf3A 69 :VPGPQDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=64356 # 1knwA.231.188 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)H233 (1knwA)H191 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1knwA)G195 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1knwA)V196 because G (3-10) conformation "forbidden" or filtered. T0547 231 :HF 1knwA 189 :HM T0547 234 :LGS 1knwA 192 :IGS T0547 239 :T 1knwA 197 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=64359 # 2d81A.231.93 read from T0547.t04.many.frag # found chain 2d81A in training set Warning: unaligning (T0547)G235 (2d81A)G118 because P (beta_P) conformation "forbidden" or filtered. T0547 231 :HFHL 2d81A 114 :YMWT T0547 236 :SQIT 2d81A 119 :SSDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=64361 # 1uuyA.231.75 read from T0547.t04.many.frag # found chain 1uuyA in training set T0547 231 :HFHLGSQIT 1uuyA 76 :LTLGGTGFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64362 # 1wehA.231.4 read from T0547.t04.many.frag # found chain 1wehA in training set T0547 231 :HFHLGSQIT 1wehA 5 :AVFVSSRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64363 # 1oltA.231.208 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)Q237 (1oltA)P215 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1oltA)K216 because T (delta_L) conformation "forbidden" or filtered. T0547 231 :HFHLGS 1oltA 209 :DLIYGL T0547 239 :T 1oltA 217 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=64365 # 1xtpA.231.162 read from T0547.t04.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)L234 (1xtpA)W166 because L (left) conformation "forbidden" or filtered. T0547 231 :HFH 1xtpA 163 :VIQ T0547 235 :GSQIT 1xtpA 167 :TAIYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=64367 # 1p35A.231.195 read from T0547.t04.many.frag # found chain 1p35A in template set T0547 231 :HFHLGSQIT 1p35A 197 :VAYVDSVQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64368 # 1q74A.231.133 read from T0547.t04.many.frag # found chain 1q74A in training set Warning: unaligning (T0547)F232 (1q74A)T135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1q74A)G140 because L (left) conformation "forbidden" or filtered. T0547 231 :H 1q74A 134 :V T0547 233 :HLGS 1q74A 136 :YDPN T0547 238 :IT 1q74A 141 :GY Number of specific fragments extracted= 3 number of extra gaps= 2 total=64371 # 1su8A.231.440 read from T0547.t04.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)C446 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)N447 T0547 231 :HFHL 1su8A 441 :CLFA T0547 238 :IT 1su8A 448 :NV Number of specific fragments extracted= 2 number of extra gaps= 1 total=64373 # 1w9hA.231.249 read from T0547.t04.many.frag # found chain 1w9hA in template set T0547 231 :HFHLGSQIT 1w9hA 250 :TLHVSGKRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=64374 # 1pii.231.231 read from T0547.t04.many.frag # found chain 1pii in template set T0547 231 :HFHLGSQIT 1pii 232 :GFLIGSALM Number of specific fragments extracted= 1 number of extra gaps= 0 total=64375 # 1ox0A.231.319 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)L234 (1ox0A)G304 because L (left) conformation "forbidden" or filtered. T0547 231 :HFH 1ox0A 301 :NAH T0547 235 :GSQIT 1ox0A 305 :TSTPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=64377 # 1srqA.231.190 read from T0547.t04.many.frag # found chain 1srqA in template set T0547 231 :HFHLGSQIT 1srqA 265 :MFHVSTKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=64378 # 1l5oA.231.64 read from T0547.t04.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)L234 (1l5oA)A68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1l5oA)D69 because P (beta_P) conformation "forbidden" or filtered. T0547 231 :HFH 1l5oA 65 :VMC T0547 236 :SQIT 1l5oA 70 :HGVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=64380 # 1y42X.231.100 read from T0547.t04.many.frag # found chain 1y42X in template set T0547 231 :HFHLGSQIT 1y42X 132 :TLIGGSTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64381 # 1jfxA.231.61 read from T0547.t04.many.frag # found chain 1jfxA in training set Warning: unaligning (T0547)G235 (1jfxA)R66 because D (zeta) conformation "forbidden" or filtered. T0547 231 :HFHL 1jfxA 62 :YHFA T0547 236 :SQIT 1jfxA 67 :PNAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=64383 # 7a3hA.231.98 read from T0547.t04.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)N106 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)N106 T0547 231 :H 7a3hA 99 :D T0547 234 :LGS 7a3hA 102 :ILS T0547 239 :T 7a3hA 107 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=64386 # 1lucA.231.225 read from T0547.t04.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)G235 (1lucA)T230 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1lucA)V232 because E (beta_S) conformation "forbidden" or filtered. T0547 231 :HFHL 1lucA 226 :LSYI T0547 236 :S 1lucA 231 :S T0547 238 :IT 1lucA 233 :DH Number of specific fragments extracted= 3 number of extra gaps= 2 total=64389 # 1o97D.231.60 read from T0547.t04.many.frag # found chain 1o97D in training set T0547 231 :HFHLGSQIT 1o97D 61 :VVVKGSSID Number of specific fragments extracted= 1 number of extra gaps= 0 total=64390 # 1k3rA.231.7 read from T0547.t04.many.frag # found chain 1k3rA in template set Warning: unaligning (T0547)I238 (1k3rA)T15 because G (3-10) conformation "forbidden" or filtered. T0547 231 :HFHLGSQ 1k3rA 8 :LFIPDSL T0547 239 :T 1k3rA 16 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=64392 # 2bvlA.231.127 read from T0547.t04.many.frag # found chain 2bvlA in template set Warning: unaligning (T0547)L234 (2bvlA)Y131 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (2bvlA)A135 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (2bvlA)A135 T0547 231 :HFH 2bvlA 128 :NVF T0547 235 :GS 2bvlA 132 :DS T0547 239 :T 2bvlA 136 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=64395 # 2bh1A.231.54 read from T0547.t04.many.frag # found chain 2bh1A in template set T0547 231 :HFHLGSQIT 2bh1A 55 :VLLAASDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64396 # 1sr9A.231.249 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)A253 Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)A253 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)V255 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)V255 Warning: unaligning (T0547)I238 (1sr9A)M257 because G (3-10) conformation "forbidden" or filtered. T0547 231 :HF 1sr9A 250 :NL T0547 237 :Q 1sr9A 256 :E T0547 239 :T 1sr9A 258 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=64399 # 1itxA.231.398 read from T0547.t04.many.frag # found chain 1itxA in training set Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE in next template residue (1itxA)E434 Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE at template residue (1itxA)E434 T0547 231 :HF 1itxA 431 :MF T0547 235 :GSQIT 1itxA 435 :LSGDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=64401 # 1jqnA.231.578 read from T0547.t04.many.frag # found chain 1jqnA in template set T0547 231 :HFHLGSQIT 1jqnA 579 :HGRGGSIGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64402 # 1onwA.231.198 read from T0547.t04.many.frag # found chain 1onwA in training set T0547 231 :HFHLGSQIT 1onwA 199 :VFHMGDSKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64403 # 1l7dA.231.96 read from T0547.t04.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)F232 (1l7dA)C98 because Y (epsilon') conformation "forbidden" or filtered. T0547 231 :H 1l7dA 97 :M T0547 233 :HLGSQIT 1l7dA 99 :HLGALTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=64405 # 7odcA.232.195 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G235 (7odcA)G199 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)T239 (7odcA)T203 because G (3-10) conformation "forbidden" or filtered. T0547 232 :FHL 7odcA 196 :FHV T0547 236 :SQI 7odcA 200 :SGC T0547 240 :E 7odcA 204 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=64408 # 1uf3A.232.67 read from T0547.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 232 :FHLGSQIT 1uf3A 68 :YVPGPQDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=64409 # 2apjA.232.197 read from T0547.t04.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)T239 (2apjA)G205 because S (epsilon) conformation "forbidden" or filtered. T0547 232 :FHLGSQI 2apjA 198 :VAIASGG T0547 240 :E 2apjA 206 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=64411 # 1xtpA.232.163 read from T0547.t04.many.frag # found chain 1xtpA in template set T0547 232 :FHLGSQITE 1xtpA 164 :IQWTAIYLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64412 # 1uuyA.232.76 read from T0547.t04.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)L234 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. T0547 232 :FH 1uuyA 77 :TL T0547 235 :GSQITE 1uuyA 80 :GTGFTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=64414 # 2d81A.232.94 read from T0547.t04.many.frag # found chain 2d81A in training set T0547 232 :FHLGSQITE 2d81A 115 :MWTGSSDTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64415 # 1pii.232.232 read from T0547.t04.many.frag # found chain 1pii in template set T0547 232 :FHLGSQITE 1pii 233 :FLIGSALMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64416 # 1p35A.232.196 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)G235 (1p35A)D201 because E (beta_S) conformation "forbidden" or filtered. T0547 232 :FHL 1p35A 198 :AYV T0547 236 :SQITE 1p35A 202 :SVQFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=64418 # 1knwA.232.189 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q237 (1knwA)G195 because S (epsilon) conformation "forbidden" or filtered. T0547 232 :FHLGS 1knwA 190 :MHIGS T0547 238 :ITE 1knwA 196 :VDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=64420 # 1ox0A.232.320 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)L234 (1ox0A)G304 because L (left) conformation "forbidden" or filtered. T0547 232 :FH 1ox0A 302 :AH T0547 235 :GSQITE 1ox0A 305 :TSTPAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=64422 # 1oltA.232.209 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)S236 (1oltA)L214 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1oltA)K216 because T (delta_L) conformation "forbidden" or filtered. T0547 232 :FHLG 1oltA 210 :LIYG T0547 237 :Q 1oltA 215 :P T0547 239 :TE 1oltA 217 :QT Number of specific fragments extracted= 3 number of extra gaps= 2 total=64425 # 1lucA.232.226 read from T0547.t04.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)Q237 (1lucA)V232 because E (beta_S) conformation "forbidden" or filtered. T0547 232 :FHLGS 1lucA 227 :SYITS T0547 238 :ITE 1lucA 233 :DHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=64427 # 1sr9A.232.250 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)A253 Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)A253 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)V255 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)V255 T0547 232 :F 1sr9A 251 :L T0547 237 :QITE 1sr9A 256 :EMTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=64429 # 1cliA.232.106 read from T0547.t04.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)G235 (1cliA)A110 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1cliA)T111 because Y (epsilon') conformation "forbidden" or filtered. T0547 232 :FHL 1cliA 107 :DYY T0547 237 :QITE 1cliA 112 :GKLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=64431 # 1wehA.232.5 read from T0547.t04.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)L234 (1wehA)V8 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1wehA)S9 because P (beta_P) conformation "forbidden" or filtered. T0547 232 :FH 1wehA 6 :VF T0547 236 :SQITE 1wehA 10 :SRLSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=64433 # 1q74A.232.134 read from T0547.t04.many.frag # found chain 1q74A in training set Warning: unaligning (T0547)Q237 (1q74A)G140 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1q74A)G143 because T (delta_L) conformation "forbidden" or filtered. T0547 232 :FHLGS 1q74A 135 :TYDPN T0547 238 :IT 1q74A 141 :GY Number of specific fragments extracted= 2 number of extra gaps= 2 total=64435 # 1w9hA.232.250 read from T0547.t04.many.frag # found chain 1w9hA in template set Warning: unaligning (T0547)S236 (1w9hA)G255 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1w9hA)R257 because Y (epsilon') conformation "forbidden" or filtered. T0547 232 :FHLG 1w9hA 251 :LHVS T0547 237 :Q 1w9hA 256 :K T0547 239 :TE 1w9hA 258 :PK Number of specific fragments extracted= 3 number of extra gaps= 2 total=64438 # 1vjrA.232.236 read from T0547.t04.many.frag # found chain 1vjrA in template set T0547 232 :FHLGSQITE 1vjrA 225 :ILVLTGETT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64439 # 1su8A.232.441 read from T0547.t04.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)L234 (1su8A)A444 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)C446 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)N447 T0547 232 :FH 1su8A 442 :LF T0547 238 :ITE 1su8A 448 :NVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=64441 # 1jqnA.232.579 read from T0547.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)L234 (1jqnA)G582 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1jqnA)G588 because S (epsilon) conformation "forbidden" or filtered. T0547 232 :FH 1jqnA 580 :GR T0547 235 :GSQIT 1jqnA 583 :GSIGR Number of specific fragments extracted= 2 number of extra gaps= 2 total=64443 # 1j31A.232.142 read from T0547.t04.many.frag # found chain 1j31A in training set Warning: unaligning (T0547)G235 (1j31A)C146 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1j31A)F151 because P (beta_P) conformation "forbidden" or filtered. T0547 232 :FHL 1j31A 143 :VMI T0547 236 :SQIT 1j31A 147 :FDWF Number of specific fragments extracted= 2 number of extra gaps= 2 total=64445 # 1srqA.232.191 read from T0547.t04.many.frag # found chain 1srqA in template set T0547 232 :FHLGSQITE 1srqA 266 :FHVSTKLPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64446 # 1i4wA.232.146 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 232 :FHLGSQITE 1i4wA 135 :VANVTGEGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64447 # 1itxA.232.399 read from T0547.t04.many.frag # found chain 1itxA in training set Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE in next template residue (1itxA)E434 Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE at template residue (1itxA)E434 T0547 232 :F 1itxA 432 :F T0547 235 :GSQITE 1itxA 435 :LSGDRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=64449 # 1k3rA.232.8 read from T0547.t04.many.frag # found chain 1k3rA in template set T0547 232 :FHLGSQITE 1k3rA 9 :FIPDSLTAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64450 # 1qlwA.232.249 read from T0547.t04.many.frag # found chain 1qlwA in training set Warning: unaligning (T0547)Q237 (1qlwA)H255 because L (left) conformation "forbidden" or filtered. T0547 232 :FHLGS 1qlwA 250 :VVFGD T0547 238 :ITE 1qlwA 256 :IEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=64452 # 2nacA.232.280 read from T0547.t04.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)G235 (2nacA)R284 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (2nacA)D289 because P (beta_P) conformation "forbidden" or filtered. T0547 232 :FHL 2nacA 281 :NTA T0547 236 :SQIT 2nacA 285 :GKLC Number of specific fragments extracted= 2 number of extra gaps= 2 total=64454 # 1l5oA.232.65 read from T0547.t04.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)L234 (1l5oA)A68 because Y (epsilon') conformation "forbidden" or filtered. T0547 232 :FH 1l5oA 66 :MC T0547 235 :GSQITE 1l5oA 69 :DHGVWD Number of specific fragments extracted= 2 number of extra gaps= 1 total=64456 # 1na6A.232.67 read from T0547.t04.many.frag # found chain 1na6A in template set T0547 232 :FHLGSQITE 1na6A 68 :AHVSSHDCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=64457 # 1xpkC.232.75 read from T0547.t04.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)G235 (1xpkC)E79 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1xpkC)V82 because G (3-10) conformation "forbidden" or filtered. T0547 232 :FHL 1xpkC 76 :VAT T0547 236 :SQ 1xpkC 80 :SA T0547 239 :TE 1xpkC 83 :DA Number of specific fragments extracted= 3 number of extra gaps= 2 total=64460 # 7odcA.233.196 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G235 (7odcA)G199 because S (epsilon) conformation "forbidden" or filtered. T0547 233 :HL 7odcA 197 :HV T0547 236 :SQITEI 7odcA 200 :SGCTDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=64462 # 1uf3A.233.68 read from T0547.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 233 :HLGSQIT 1uf3A 69 :VPGPQDA T0547 241 :I 1uf3A 77 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=64464 # 1xtpA.233.164 read from T0547.t04.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)L234 (1xtpA)W166 because L (left) conformation "forbidden" or filtered. T0547 233 :H 1xtpA 165 :Q T0547 235 :GSQITEI 1xtpA 167 :TAIYLTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=64466 # 2apjA.233.198 read from T0547.t04.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)Q237 (2apjA)G203 because T (delta_L) conformation "forbidden" or filtered. T0547 233 :HLGS 2apjA 199 :AIAS T0547 238 :ITEI 2apjA 204 :GGYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=64468 # 1p35A.233.197 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)G235 (1p35A)D201 because E (beta_S) conformation "forbidden" or filtered. T0547 233 :HL 1p35A 199 :YV T0547 236 :SQITEI 1p35A 202 :SVQFDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=64470 # 1sr9A.233.251 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)A253 Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)A253 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)V255 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)V255 T0547 237 :QITEI 1sr9A 256 :EMTTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=64471 # 1cliA.233.107 read from T0547.t04.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)S236 (1cliA)T111 because Y (epsilon') conformation "forbidden" or filtered. T0547 233 :HLG 1cliA 108 :YYA T0547 237 :QITEI 1cliA 112 :GKLDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=64473 # 1uuyA.233.77 read from T0547.t04.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)L234 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. T0547 233 :H 1uuyA 78 :L T0547 235 :GSQITEI 1uuyA 80 :GTGFTPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=64475 # 1pii.233.233 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G235 (1pii)G236 because H (helix) conformation "forbidden" or filtered. T0547 233 :HL 1pii 234 :LI T0547 236 :SQITEI 1pii 237 :SALMAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=64477 # 2nacA.233.281 read from T0547.t04.many.frag # found chain 2nacA in template set T0547 233 :HLGSQITEI 2nacA 282 :TARGKLCDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64478 # 1ox0A.233.321 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)L234 (1ox0A)G304 because L (left) conformation "forbidden" or filtered. T0547 233 :H 1ox0A 303 :H T0547 235 :GSQITEI 1ox0A 305 :TSTPANE Number of specific fragments extracted= 2 number of extra gaps= 1 total=64480 # 1oltA.233.210 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)I238 (1oltA)K216 because T (delta_L) conformation "forbidden" or filtered. T0547 233 :HLGSQ 1oltA 211 :IYGLP T0547 239 :TEI 1oltA 217 :QTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=64482 # 1lucA.233.227 read from T0547.t04.many.frag # found chain 1lucA in training set T0547 233 :HLGSQITEI 1lucA 228 :YITSVDHDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64483 # 2basA.233.176 read from T0547.t04.many.frag # found chain 2basA in template set Warning: unaligning (T0547)H233 (2basA)N153 because L (left) conformation "forbidden" or filtered. T0547 234 :LGSQITEI 2basA 154 :IGKESSNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=64484 # 1lucA.233.189 read from T0547.t04.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)L234 (1lucA)I191 because D (zeta) conformation "forbidden" or filtered. T0547 233 :H 1lucA 190 :M T0547 235 :GSQITEI 1lucA 192 :LSWIINT Number of specific fragments extracted= 2 number of extra gaps= 1 total=64486 # 1vjrA.233.237 read from T0547.t04.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)Q237 (1vjrA)G230 because Y (epsilon') conformation "forbidden" or filtered. T0547 233 :HLGS 1vjrA 226 :LVLT T0547 238 :ITEI 1vjrA 231 :ETTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=64488 # 3thiA.233.5 read from T0547.t04.many.frag # found chain 3thiA in template set Warning: unaligning (T0547)G235 (3thiA)Y16 because P (beta_P) conformation "forbidden" or filtered. T0547 233 :HL 3thiA 14 :AI T0547 236 :SQITEI 3thiA 17 :PYVPDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=64490 # 2d81A.233.95 read from T0547.t04.many.frag # found chain 2d81A in training set Warning: unaligning (T0547)G235 (2d81A)G118 because P (beta_P) conformation "forbidden" or filtered. T0547 233 :HL 2d81A 116 :WT T0547 236 :SQITEI 2d81A 119 :SSDTTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=64492 # 1jqnA.233.580 read from T0547.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)I241 (1jqnA)G589 because S (epsilon) conformation "forbidden" or filtered. T0547 233 :HLGSQITE 1jqnA 581 :RGGSIGRG Number of specific fragments extracted= 1 number of extra gaps= 1 total=64493 # 1j31A.233.143 read from T0547.t04.many.frag # found chain 1j31A in training set T0547 233 :HLGSQITEI 1j31A 144 :MICFDWFFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=64494 # 1knwA.233.190 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q237 (1knwA)G195 because S (epsilon) conformation "forbidden" or filtered. T0547 233 :HLGS 1knwA 191 :HIGS T0547 238 :ITEI 1knwA 196 :VDYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=64496 # 1w9hA.233.251 read from T0547.t04.many.frag # found chain 1w9hA in template set T0547 233 :HLGSQITEI 1w9hA 252 :HVSGKRPKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=64497 # 1wehA.233.6 read from T0547.t04.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)L234 (1wehA)V8 because Y (epsilon') conformation "forbidden" or filtered. T0547 233 :H 1wehA 7 :F T0547 235 :GSQITEI 1wehA 9 :SSRLSPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=64499 # 1k3rA.233.9 read from T0547.t04.many.frag # found chain 1k3rA in template set T0547 233 :HLGSQITEI 1k3rA 10 :IPDSLTAET Number of specific fragments extracted= 1 number of extra gaps= 0 total=64500 # 2d1pA.233.17 read from T0547.t04.many.frag # found chain 2d1pA in template set Warning: unaligning (T0547)G235 (2d1pA)T8 because G (3-10) conformation "forbidden" or filtered. T0547 233 :HL 2d1pA 6 :VV T0547 236 :SQITEI 2d1pA 9 :GPAYGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=64502 # 1h05A.233.74 read from T0547.t04.many.frag # found chain 1h05A in training set T0547 233 :HLGSQITEI 1h05A 75 :NAGGLTHTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64503 # 1l5oA.233.66 read from T0547.t04.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)L234 (1l5oA)A68 because Y (epsilon') conformation "forbidden" or filtered. T0547 233 :H 1l5oA 67 :C T0547 235 :GSQITEI 1l5oA 69 :DHGVWDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=64505 # 1p1xA.233.201 read from T0547.t04.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)S236 (1p1xA)G204 because S (epsilon) conformation "forbidden" or filtered. T0547 233 :HLG 1p1xA 201 :KPA T0547 237 :QITEI 1p1xA 205 :GVRTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=64507 # 1q74A.233.135 read from T0547.t04.many.frag # found chain 1q74A in training set Warning: unaligning (T0547)Q237 (1q74A)G140 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1q74A)G143 because T (delta_L) conformation "forbidden" or filtered. T0547 233 :HLGS 1q74A 136 :YDPN T0547 238 :IT 1q74A 141 :GY T0547 241 :I 1q74A 144 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=64510 # 2nacA.233.120 read from T0547.t04.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)H233 (2nacA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0547 234 :LGSQITEI 2nacA 122 :IGSDHVDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=64511 # 7odcA.234.197 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 234 :LGSQITEIH 7odcA 198 :VGSGCTDPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64512 # 1uf3A.234.69 read from T0547.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)G235 (1uf3A)G71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 234 :L 1uf3A 70 :P T0547 236 :SQIT 1uf3A 72 :PQDA T0547 241 :IH 1uf3A 77 :IW Number of specific fragments extracted= 3 number of extra gaps= 2 total=64515 # 1cliA.234.108 read from T0547.t04.many.frag # found chain 1cliA in template set T0547 234 :LGSQITEIH 1cliA 109 :YATGKLDVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64516 # 1xtpA.234.165 read from T0547.t04.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)L234 (1xtpA)W166 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1xtpA)T167 because G (3-10) conformation "forbidden" or filtered. T0547 236 :SQITEIH 1xtpA 168 :AIYLTDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=64517 # 1sr9A.234.252 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)A253 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)V255 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)V255 T0547 237 :QITEIH 1sr9A 256 :EMTTPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=64518 # 2nacA.234.282 read from T0547.t04.many.frag # found chain 2nacA in template set T0547 234 :LGSQITEIH 2nacA 283 :ARGKLCDRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64519 # 1p35A.234.198 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)G235 (1p35A)D201 because E (beta_S) conformation "forbidden" or filtered. T0547 234 :L 1p35A 200 :V T0547 236 :SQITEIH 1p35A 202 :SVQFDGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=64521 # 2apjA.234.199 read from T0547.t04.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)S236 (2apjA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (2apjA)G203 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T239 (2apjA)G205 because S (epsilon) conformation "forbidden" or filtered. T0547 234 :LG 2apjA 200 :IA T0547 238 :I 2apjA 204 :G T0547 240 :EIH 2apjA 206 :YID Number of specific fragments extracted= 3 number of extra gaps= 2 total=64524 # 1lucA.234.190 read from T0547.t04.many.frag # found chain 1lucA in training set T0547 234 :LGSQITEIH 1lucA 191 :ILSWIINTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=64525 # 3thiA.234.6 read from T0547.t04.many.frag # found chain 3thiA in template set T0547 234 :LGSQITEIH 3thiA 15 :IYPYVPDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64526 # 2basA.234.177 read from T0547.t04.many.frag # found chain 2basA in template set T0547 234 :LGSQITEIH 2basA 154 :IGKESSNLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64527 # 1vjrA.234.238 read from T0547.t04.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)Q237 (1vjrA)G230 because Y (epsilon') conformation "forbidden" or filtered. T0547 234 :LGS 1vjrA 227 :VLT T0547 238 :ITEIH 1vjrA 231 :ETTPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=64529 # 2fokA.234.295 read from T0547.t04.many.frag # found chain 2fokA in template set T0547 234 :LGSQITEIH 2fokA 296 :LATNLTDKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64530 # 1j31A.234.144 read from T0547.t04.many.frag # found chain 1j31A in training set T0547 234 :LGSQITEIH 1j31A 145 :ICFDWFFPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64531 # 1oltA.234.211 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)I238 (1oltA)K216 because T (delta_L) conformation "forbidden" or filtered. T0547 234 :LGSQ 1oltA 212 :YGLP T0547 239 :TEIH 1oltA 217 :QTPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=64533 # 1p1xA.234.202 read from T0547.t04.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)S236 (1p1xA)G204 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1p1xA)G205 because T (delta_L) conformation "forbidden" or filtered. T0547 234 :LG 1p1xA 202 :PA T0547 238 :ITEIH 1p1xA 206 :VRTAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=64535 # 1jqnA.234.581 read from T0547.t04.many.frag # found chain 1jqnA in template set T0547 234 :LGSQITEIH 1jqnA 582 :GGSIGRGGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64536 # 1pii.234.234 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G235 (1pii)G236 because H (helix) conformation "forbidden" or filtered. T0547 234 :L 1pii 235 :I T0547 236 :SQITEIH 1pii 237 :SALMAHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=64538 # 2bogX.234.186 read from T0547.t04.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)L234 (2bogX)N187 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (2bogX)T188 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (2bogX)Y191 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (2bogX)Y191 T0547 236 :S 2bogX 189 :S T0547 239 :TEIH 2bogX 192 :RWTA Number of specific fragments extracted= 2 number of extra gaps= 2 total=64540 # 1uuyA.234.78 read from T0547.t04.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)S236 (1uuyA)T81 because G (3-10) conformation "forbidden" or filtered. T0547 234 :LG 1uuyA 79 :GG T0547 237 :QITEIH 1uuyA 82 :GFTPRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=64542 # 1fp2A.234.253 read from T0547.t04.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)L234 (1fp2A)Y254 because L (left) conformation "forbidden" or filtered. T0547 235 :GSQITEIH 1fp2A 255 :ILHNWTDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=64543 # 1qf5A.234.146 read from T0547.t04.many.frag # found chain 1qf5A in template set Warning: unaligning (T0547)E240 (1qf5A)D153 because D (zeta) conformation "forbidden" or filtered. T0547 234 :LGSQIT 1qf5A 147 :RVGDLF T0547 241 :IH 1qf5A 154 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=64545 # 1h05A.234.75 read from T0547.t04.many.frag # found chain 1h05A in training set Warning: unaligning (T0547)G235 (1h05A)G77 because S (epsilon) conformation "forbidden" or filtered. T0547 234 :L 1h05A 76 :A T0547 236 :SQITEIH 1h05A 78 :GLTHTSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=64547 # 2nacA.234.121 read from T0547.t04.many.frag # found chain 2nacA in template set T0547 234 :LGSQITEIH 2nacA 122 :IGSDHVDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64548 # 1of8A.234.281 read from T0547.t04.many.frag # found chain 1of8A in training set Warning: unaligning (T0547)L234 (1of8A)H282 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)T239 (1of8A)K287 because L (left) conformation "forbidden" or filtered. T0547 235 :GSQI 1of8A 283 :GNSN T0547 240 :EIH 1of8A 288 :DFR Number of specific fragments extracted= 2 number of extra gaps= 2 total=64550 # 1ox0A.234.322 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)L234 (1ox0A)G304 because L (left) conformation "forbidden" or filtered. T0547 235 :GSQITEIH 1ox0A 305 :TSTPANEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=64551 # 1xg4A.234.158 read from T0547.t04.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)E240 (1xg4A)G166 because S (epsilon) conformation "forbidden" or filtered. T0547 234 :LGSQIT 1xg4A 160 :DALAVE T0547 241 :IH 1xg4A 167 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=64553 # 1q74A.234.136 read from T0547.t04.many.frag # found chain 1q74A in training set Warning: unaligning (T0547)Q237 (1q74A)G140 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1q74A)G141 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1q74A)G143 because T (delta_L) conformation "forbidden" or filtered. T0547 234 :LGS 1q74A 137 :DPN T0547 239 :T 1q74A 142 :Y T0547 241 :IH 1q74A 144 :HP Number of specific fragments extracted= 3 number of extra gaps= 2 total=64556 # 1rqbA.234.195 read from T0547.t04.many.frag # found chain 1rqbA in template set Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rqbA)D185 Warning: unaligning (T0547)S236 (1rqbA)A187 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1rqbA)A188 because L (left) conformation "forbidden" or filtered. T0547 235 :G 1rqbA 186 :M T0547 238 :ITEIH 1rqbA 189 :LLKPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=64558 # 1t9hA.234.124 read from T0547.t04.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)I238 (1t9hA)L120 because G (3-10) conformation "forbidden" or filtered. T0547 234 :LGSQ 1t9hA 116 :TKMD T0547 239 :TEIH 1t9hA 121 :IEDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=64560 # 7odcA.235.198 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E240 (7odcA)D204 because E (beta_S) conformation "forbidden" or filtered. T0547 235 :GSQIT 7odcA 199 :GSGCT T0547 241 :IHP 7odcA 205 :PDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=64562 # 1uf3A.235.70 read from T0547.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)G235 (1uf3A)G71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 236 :SQIT 1uf3A 72 :PQDA T0547 241 :IHP 1uf3A 77 :IWE Number of specific fragments extracted= 2 number of extra gaps= 2 total=64564 # 1cliA.235.109 read from T0547.t04.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)S236 (1cliA)T111 because Y (epsilon') conformation "forbidden" or filtered. T0547 235 :G 1cliA 110 :A T0547 237 :QITEIHP 1cliA 112 :GKLDVDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=64566 # 2nacA.235.283 read from T0547.t04.many.frag # found chain 2nacA in template set T0547 235 :GSQITEIHP 2nacA 284 :RGKLCDRDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64567 # 1sr9A.235.253 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1sr9A)V255 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)V255 Warning: unaligning (T0547)I238 (1sr9A)M257 because G (3-10) conformation "forbidden" or filtered. T0547 237 :Q 1sr9A 256 :E T0547 239 :TEIHP 1sr9A 258 :TTPNV Number of specific fragments extracted= 2 number of extra gaps= 2 total=64569 # 1xtpA.235.166 read from T0547.t04.many.frag # found chain 1xtpA in template set T0547 235 :GSQITEIHP 1xtpA 167 :TAIYLTDAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64570 # 1p1xA.235.203 read from T0547.t04.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)S236 (1p1xA)G204 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1p1xA)G205 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1p1xA)T208 because E (beta_S) conformation "forbidden" or filtered. T0547 235 :G 1p1xA 203 :A T0547 238 :IT 1p1xA 206 :VR T0547 241 :IHP 1p1xA 209 :AED Number of specific fragments extracted= 3 number of extra gaps= 2 total=64573 # 3thiA.235.7 read from T0547.t04.many.frag # found chain 3thiA in template set Warning: unaligning (T0547)E240 (3thiA)D21 because D (zeta) conformation "forbidden" or filtered. T0547 235 :GSQIT 3thiA 16 :YPYVP T0547 241 :IHP 3thiA 22 :PAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=64575 # 2fokA.235.296 read from T0547.t04.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)G235 (2fokA)A297 because Y (epsilon') conformation "forbidden" or filtered. T0547 236 :SQITEIHP 2fokA 298 :TNLTDKEY Number of specific fragments extracted= 1 number of extra gaps= 1 total=64576 # 1lucA.235.191 read from T0547.t04.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)G235 (1lucA)L192 because P (beta_P) conformation "forbidden" or filtered. T0547 236 :SQITEIHP 1lucA 193 :SWIINTHE Number of specific fragments extracted= 1 number of extra gaps= 1 total=64577 # 1qf5A.235.147 read from T0547.t04.many.frag # found chain 1qf5A in template set T0547 235 :GSQITEIHP 1qf5A 148 :VGDLFDKET Number of specific fragments extracted= 1 number of extra gaps= 0 total=64578 # 2basA.235.178 read from T0547.t04.many.frag # found chain 2basA in template set T0547 235 :GSQITEIHP 2basA 155 :GKESSNLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64579 # 1p35A.235.199 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)Q237 (1p35A)V203 because E (beta_S) conformation "forbidden" or filtered. T0547 235 :GS 1p35A 201 :DS T0547 238 :ITEIHP 1p35A 204 :QFDGEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=64581 # 2bogX.235.187 read from T0547.t04.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)S236 (2bogX)S189 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (2bogX)Y191 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (2bogX)Y191 Warning: unaligning (T0547)E240 (2bogX)W193 because P (beta_P) conformation "forbidden" or filtered. T0547 235 :G 2bogX 188 :T T0547 239 :T 2bogX 192 :R T0547 241 :IHP 2bogX 194 :TAD Number of specific fragments extracted= 3 number of extra gaps= 2 total=64584 # 2apjA.235.200 read from T0547.t04.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)I238 (2apjA)G204 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)T239 (2apjA)G205 because S (epsilon) conformation "forbidden" or filtered. T0547 235 :GSQ 2apjA 201 :ASG T0547 240 :EIHP 2apjA 206 :YIDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=64586 # 1oltA.235.212 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)Q237 (1oltA)P215 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1oltA)T218 because E (beta_S) conformation "forbidden" or filtered. T0547 235 :GS 1oltA 213 :GL T0547 238 :IT 1oltA 216 :KQ T0547 241 :IHP 1oltA 219 :PES Number of specific fragments extracted= 3 number of extra gaps= 2 total=64589 # 1vjrA.235.239 read from T0547.t04.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)Q237 (1vjrA)G230 because Y (epsilon') conformation "forbidden" or filtered. T0547 235 :GS 1vjrA 228 :LT T0547 238 :ITEIHP 1vjrA 231 :ETTPED Number of specific fragments extracted= 2 number of extra gaps= 1 total=64591 # 1j31A.235.145 read from T0547.t04.many.frag # found chain 1j31A in training set Warning: unaligning (T0547)E240 (1j31A)F151 because P (beta_P) conformation "forbidden" or filtered. T0547 235 :GSQIT 1j31A 146 :CFDWF T0547 241 :IHP 1j31A 152 :PES Number of specific fragments extracted= 2 number of extra gaps= 1 total=64593 # 1t1jA.235.15 read from T0547.t04.many.frag # found chain 1t1jA in training set Warning: unaligning (T0547)G235 (1t1jA)P9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1t1jA)H12 because Y (epsilon') conformation "forbidden" or filtered. T0547 236 :SQ 1t1jA 10 :YS T0547 239 :TEIHP 1t1jA 13 :ADAEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=64595 # 1yt3A.235.56 read from T0547.t04.many.frag # found chain 1yt3A in training set Warning: unaligning (T0547)E240 (1yt3A)D62 because N (gamma') conformation "forbidden" or filtered. T0547 235 :GSQIT 1yt3A 57 :PLGIT T0547 241 :IHP 1yt3A 63 :WSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=64597 # 1rqbA.235.196 read from T0547.t04.many.frag # found chain 1rqbA in template set Warning: unaligning (T0547)I238 (1rqbA)L189 because G (3-10) conformation "forbidden" or filtered. T0547 235 :GSQ 1rqbA 186 :MAA T0547 239 :TEIHP 1rqbA 190 :LKPQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=64599 # 2c5qA.235.185 read from T0547.t04.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)Q237 (2c5qA)Q188 because G (3-10) conformation "forbidden" or filtered. T0547 235 :GS 2c5qA 186 :PV T0547 238 :ITEIHP 2c5qA 189 :ETDISK Number of specific fragments extracted= 2 number of extra gaps= 1 total=64601 # 1fp2A.235.254 read from T0547.t04.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)I238 (1fp2A)N258 because G (3-10) conformation "forbidden" or filtered. T0547 235 :GSQ 1fp2A 255 :ILH T0547 239 :TEIHP 1fp2A 259 :WTDKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=64603 # 1ofcX.235.158 read from T0547.t04.many.frag # found chain 1ofcX in template set T0547 235 :GSQITEIHP 1ofcX 846 :CTELQDIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=64604 # 1p7tA.235.273 read from T0547.t04.many.frag # found chain 1p7tA in template set Warning: unaligning (T0547)G235 (1p7tA)S274 because G (3-10) conformation "forbidden" or filtered. T0547 236 :SQITEIHP 1p7tA 275 :VAAVDAED Number of specific fragments extracted= 1 number of extra gaps= 1 total=64605 # 1h05A.235.76 read from T0547.t04.many.frag # found chain 1h05A in training set Warning: unaligning (T0547)G235 (1h05A)G77 because S (epsilon) conformation "forbidden" or filtered. T0547 236 :SQITEIHP 1h05A 78 :GLTHTSVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=64606 # 1efdN.235.73 read from T0547.t04.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)G235 (1efdN)A104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1efdN)G105 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1efdN)G107 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1efdN)S109 because P (beta_P) conformation "forbidden" or filtered. T0547 237 :Q 1efdN 106 :Y T0547 239 :T 1efdN 108 :P T0547 241 :IHP 1efdN 110 :PEM Number of specific fragments extracted= 3 number of extra gaps= 3 total=64609 # 1jyoA.235.96 read from T0547.t04.many.frag # found chain 1jyoA in template set T0547 235 :GSQITEIHP 1jyoA 97 :ITDLTNTYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=64610 # 1jqnA.235.582 read from T0547.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)G235 (1jqnA)G583 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1jqnA)G588 because S (epsilon) conformation "forbidden" or filtered. T0547 236 :SQIT 1jqnA 584 :SIGR T0547 241 :IHP 1jqnA 589 :GAP Number of specific fragments extracted= 2 number of extra gaps= 2 total=64612 # 1ed1A.235.47 read from T0547.t04.many.frag # found chain 1ed1A in template set Warning: unaligning (T0547)E240 (1ed1A)N53 because Y (epsilon') conformation "forbidden" or filtered. T0547 235 :GSQIT 1ed1A 48 :ESLLE T0547 241 :IHP 1ed1A 54 :KEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=64614 # 7odcA.236.199 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)T239 (7odcA)T203 because G (3-10) conformation "forbidden" or filtered. T0547 236 :SQI 7odcA 200 :SGC T0547 240 :EIHPL 7odcA 204 :DPDTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=64616 # 2nacA.236.284 read from T0547.t04.many.frag # found chain 2nacA in template set T0547 236 :SQITEIHPL 2nacA 285 :GKLCDRDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64617 # 1sr9A.236.254 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1sr9A)V255 T0547 237 :QITEIHPL 1sr9A 256 :EMTTPNVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=64618 # 1cliA.236.110 read from T0547.t04.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)S236 (1cliA)T111 because Y (epsilon') conformation "forbidden" or filtered. T0547 237 :QITEIHPL 1cliA 112 :GKLDVDTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=64619 # 1qf5A.236.148 read from T0547.t04.many.frag # found chain 1qf5A in template set T0547 236 :SQITEIHPL 1qf5A 149 :GDLFDKETF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64620 # 1uf3A.236.71 read from T0547.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 236 :SQIT 1uf3A 72 :PQDA T0547 241 :IHPL 1uf3A 77 :IWEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=64622 # 1p1xA.236.204 read from T0547.t04.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)Q237 (1p1xA)G205 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1p1xA)T208 because E (beta_S) conformation "forbidden" or filtered. T0547 236 :S 1p1xA 204 :G T0547 238 :IT 1p1xA 206 :VR T0547 241 :IHPL 1p1xA 209 :AEDA Number of specific fragments extracted= 3 number of extra gaps= 2 total=64625 # 1xtpA.236.167 read from T0547.t04.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)E240 (1xtpA)T172 because P (beta_P) conformation "forbidden" or filtered. T0547 236 :SQIT 1xtpA 168 :AIYL T0547 241 :IHPL 1xtpA 173 :DADF Number of specific fragments extracted= 2 number of extra gaps= 1 total=64627 # 3thiA.236.8 read from T0547.t04.many.frag # found chain 3thiA in template set T0547 236 :SQITEIHPL 3thiA 17 :PYVPDPARF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64628 # 1lucA.236.192 read from T0547.t04.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)I238 (1lucA)I195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H242 (1lucA)H199 because H (helix) conformation "forbidden" or filtered. T0547 236 :SQ 1lucA 193 :SW T0547 239 :TEI 1lucA 196 :INT T0547 243 :PL 1lucA 200 :EK Number of specific fragments extracted= 3 number of extra gaps= 2 total=64631 # 2fokA.236.297 read from T0547.t04.many.frag # found chain 2fokA in template set T0547 236 :SQITEIHPL 2fokA 298 :TNLTDKEYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64632 # 1yt3A.236.57 read from T0547.t04.many.frag # found chain 1yt3A in training set T0547 236 :SQITEIHPL 1yt3A 58 :LGITDWSPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64633 # 2bogX.236.188 read from T0547.t04.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (2bogX)Y191 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (2bogX)Y191 T0547 236 :S 2bogX 189 :S T0547 239 :TEIHPL 2bogX 192 :RWTADE Number of specific fragments extracted= 2 number of extra gaps= 1 total=64635 # 1ofcX.236.159 read from T0547.t04.many.frag # found chain 1ofcX in template set T0547 236 :SQITEIHPL 1ofcX 847 :TELQDIERI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64636 # 1ed1A.236.48 read from T0547.t04.many.frag # found chain 1ed1A in template set Warning: unaligning (T0547)E240 (1ed1A)N53 because Y (epsilon') conformation "forbidden" or filtered. T0547 236 :SQIT 1ed1A 49 :SLLE T0547 241 :IHPL 1ed1A 54 :KEGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=64638 # 1p35A.236.200 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)S236 (1p35A)S202 because L (left) conformation "forbidden" or filtered. T0547 237 :QITEIHPL 1p35A 203 :VQFDGEQF Number of specific fragments extracted= 1 number of extra gaps= 1 total=64639 # 1h05A.236.77 read from T0547.t04.many.frag # found chain 1h05A in training set T0547 236 :SQITEIHPL 1h05A 78 :GLTHTSVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64640 # 1efdN.236.74 read from T0547.t04.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)S236 (1efdN)G105 because T (delta_L) conformation "forbidden" or filtered. T0547 237 :QITEIHPL 1efdN 106 :YGPSPEML Number of specific fragments extracted= 1 number of extra gaps= 1 total=64641 # 2basA.236.179 read from T0547.t04.many.frag # found chain 2basA in template set T0547 236 :SQITEIHPL 2basA 156 :KESSNLDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64642 # 2c5qA.236.186 read from T0547.t04.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)I238 (2c5qA)E189 because G (3-10) conformation "forbidden" or filtered. T0547 236 :SQ 2c5qA 187 :VQ T0547 239 :TEIHPL 2c5qA 190 :TDISKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=64644 # 1t1jA.236.16 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 236 :SQITEIHPL 1t1jA 10 :YSHADAEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64645 # 1oltA.236.213 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)I238 (1oltA)K216 because T (delta_L) conformation "forbidden" or filtered. T0547 236 :SQ 1oltA 214 :LP T0547 239 :TEIHPL 1oltA 217 :QTPESF Number of specific fragments extracted= 2 number of extra gaps= 1 total=64647 # 1p7tA.236.274 read from T0547.t04.many.frag # found chain 1p7tA in template set Warning: unaligning (T0547)Q237 (1p7tA)A276 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1p7tA)D279 because Y (epsilon') conformation "forbidden" or filtered. T0547 236 :S 1p7tA 275 :V T0547 238 :IT 1p7tA 277 :AV T0547 241 :IHPL 1p7tA 280 :AEDK Number of specific fragments extracted= 3 number of extra gaps= 2 total=64650 # 1rqbA.236.197 read from T0547.t04.many.frag # found chain 1rqbA in template set Warning: unaligning (T0547)Q237 (1rqbA)A188 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1rqbA)K191 because P (beta_P) conformation "forbidden" or filtered. T0547 236 :S 1rqbA 187 :A T0547 238 :IT 1rqbA 189 :LL T0547 241 :IHPL 1rqbA 192 :PQPA Number of specific fragments extracted= 3 number of extra gaps= 2 total=64653 # 1ytlA.236.154 read from T0547.t04.many.frag # found chain 1ytlA in training set T0547 236 :SQITEIHPL 1ytlA 155 :NLWKKEEDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64654 # 1n2zA.236.85 read from T0547.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)E240 (1n2zA)S111 because Y (epsilon') conformation "forbidden" or filtered. T0547 236 :SQIT 1n2zA 107 :VDAT T0547 241 :IHPL 1n2zA 112 :IEQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=64656 # 1m22A.236.342 read from T0547.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)E240 (1m22A)S384 because Y (epsilon') conformation "forbidden" or filtered. T0547 236 :SQIT 1m22A 380 :APLR T0547 241 :IHPL 1m22A 385 :LADL Number of specific fragments extracted= 2 number of extra gaps= 1 total=64658 # 1fp2A.236.255 read from T0547.t04.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)E240 (1fp2A)T260 because P (beta_P) conformation "forbidden" or filtered. T0547 236 :SQIT 1fp2A 256 :LHNW T0547 241 :IHPL 1fp2A 261 :DKDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=64660 # 1dj7A.236.27 read from T0547.t04.many.frag # found chain 1dj7A in template set T0547 236 :SQITEIHPL 1dj7A 28 :YFCSDLSVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64661 # 1urjA.236.604 read from T0547.t04.many.frag # found chain 1urjA in template set Warning: unaligning (T0547)T239 (1urjA)T608 because G (3-10) conformation "forbidden" or filtered. T0547 236 :SQI 1urjA 605 :TII T0547 240 :EIHPL 1urjA 609 :NREAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=64663 # 7odcA.237.200 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 237 :QITEIHPLK 7odcA 201 :GCTDPDTFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64664 # 1cliA.237.111 read from T0547.t04.many.frag # found chain 1cliA in template set T0547 237 :QITEIHPLK 1cliA 112 :GKLDVDTAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64665 # 1xtpA.237.168 read from T0547.t04.many.frag # found chain 1xtpA in template set T0547 237 :QITEIHPLK 1xtpA 169 :IYLTDADFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64666 # 1qf5A.237.149 read from T0547.t04.many.frag # found chain 1qf5A in template set T0547 237 :QITEIHPLK 1qf5A 150 :DLFDKETFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64667 # 1lucA.237.193 read from T0547.t04.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)I238 (1lucA)I195 because G (3-10) conformation "forbidden" or filtered. T0547 237 :Q 1lucA 194 :W T0547 239 :TEIHPLK 1lucA 196 :INTHEKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=64669 # 2nacA.237.285 read from T0547.t04.many.frag # found chain 2nacA in template set T0547 237 :QITEIHPLK 2nacA 286 :KLCDRDAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64670 # 1p1xA.237.205 read from T0547.t04.many.frag # found chain 1p1xA in training set T0547 237 :QITEIHPLK 1p1xA 205 :GVRTAEDAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64671 # 3thiA.237.9 read from T0547.t04.many.frag # found chain 3thiA in template set T0547 237 :QITEIHPLK 3thiA 18 :YVPDPARFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64672 # 1sr9A.237.255 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)E240 (1sr9A)T259 because P (beta_P) conformation "forbidden" or filtered. T0547 237 :QIT 1sr9A 256 :EMT T0547 241 :IHPLK 1sr9A 260 :PNVYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=64674 # 1uf3A.237.72 read from T0547.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 237 :QIT 1uf3A 73 :QDA T0547 241 :IHPLK 1uf3A 77 :IWEYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=64676 # 1yt3A.237.58 read from T0547.t04.many.frag # found chain 1yt3A in training set T0547 237 :QITEIHPLK 1yt3A 59 :GITDWSPLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64677 # 1p35A.237.201 read from T0547.t04.many.frag # found chain 1p35A in template set T0547 237 :QITEIHPLK 1p35A 203 :VQFDGEQFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64678 # 1ed1A.237.49 read from T0547.t04.many.frag # found chain 1ed1A in template set T0547 237 :QITEIHPLK 1ed1A 50 :LLENKEGCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64679 # 1h05A.237.78 read from T0547.t04.many.frag # found chain 1h05A in training set T0547 237 :QITEIHPLK 1h05A 79 :LTHTSVALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64680 # 1oltA.237.214 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)I238 (1oltA)K216 because T (delta_L) conformation "forbidden" or filtered. T0547 237 :Q 1oltA 215 :P T0547 239 :TEIHPLK 1oltA 217 :QTPESFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=64682 # 2bogX.237.189 read from T0547.t04.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (2bogX)Y191 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (2bogX)Y191 T0547 239 :TEIHPLK 2bogX 192 :RWTADEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=64683 # 2c5qA.237.187 read from T0547.t04.many.frag # found chain 2c5qA in training set T0547 237 :QITEIHPLK 2c5qA 188 :QETDISKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64684 # 1urjA.237.605 read from T0547.t04.many.frag # found chain 1urjA in template set T0547 237 :QITEIHPLK 1urjA 606 :IITNREALH Number of specific fragments extracted= 1 number of extra gaps= 0 total=64685 # 1ytlA.237.155 read from T0547.t04.many.frag # found chain 1ytlA in training set T0547 237 :QITEIHPLK 1ytlA 156 :LWKKEEDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64686 # 2fokA.237.298 read from T0547.t04.many.frag # found chain 2fokA in template set T0547 237 :QITEIHPLK 2fokA 299 :NLTDKEYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64687 # 1m22A.237.343 read from T0547.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)E240 (1m22A)S384 because Y (epsilon') conformation "forbidden" or filtered. T0547 237 :QIT 1m22A 381 :PLR T0547 241 :IHPLK 1m22A 385 :LADLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=64689 # 1dj7A.237.28 read from T0547.t04.many.frag # found chain 1dj7A in template set Warning: unaligning (T0547)E240 (1dj7A)D32 because N (gamma') conformation "forbidden" or filtered. T0547 237 :QIT 1dj7A 29 :FCS T0547 241 :IHPLK 1dj7A 33 :LSVTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=64691 # 1n2zA.237.86 read from T0547.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)Q237 (1n2zA)D108 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1n2zA)S111 because Y (epsilon') conformation "forbidden" or filtered. T0547 238 :IT 1n2zA 109 :AT T0547 241 :IHPLK 1n2zA 112 :IEQIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=64693 # 1dpgA.237.87 read from T0547.t04.many.frag # found chain 1dpgA in template set T0547 237 :QITEIHPLK 1dpgA 88 :DAASYAVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64694 # 1yzxA.237.130 read from T0547.t04.many.frag # found chain 1yzxA in template set Warning: unaligning (T0547)Q237 (1yzxA)D131 because P (beta_P) conformation "forbidden" or filtered. T0547 238 :ITEIHPLK 1yzxA 132 :ITEPQSIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=64695 # 1p7tA.237.275 read from T0547.t04.many.frag # found chain 1p7tA in template set Warning: unaligning (T0547)E240 (1p7tA)D279 because Y (epsilon') conformation "forbidden" or filtered. T0547 237 :QIT 1p7tA 276 :AAV T0547 241 :IHPLK 1p7tA 280 :AEDKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=64697 # 1ye8A.237.110 read from T0547.t04.many.frag # found chain 1ye8A in training set T0547 237 :QITEIHPLK 1ye8A 111 :MELFSKKFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64698 # 1ie9A.237.176 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 237 :QITEIHPLK 1ie9A 345 :GVQDAALIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64699 # 1ofcX.237.160 read from T0547.t04.many.frag # found chain 1ofcX in template set T0547 237 :QITEIHPLK 1ofcX 848 :ELQDIERIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=64700 # 2bk9A.237.50 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 237 :QITEIHPLK 2bk9A 51 :ELSGNARFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64701 # 7odcA.238.201 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 238 :ITEIHPLKK 7odcA 202 :CTDPDTFVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64702 # 2bk9A.238.51 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 238 :ITEIHPLKK 2bk9A 52 :LSGNARFRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64703 # 1xtpA.238.169 read from T0547.t04.many.frag # found chain 1xtpA in template set T0547 238 :ITEIHPLKK 1xtpA 170 :YLTDADFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64704 # 1qf5A.238.150 read from T0547.t04.many.frag # found chain 1qf5A in template set T0547 238 :ITEIHPLKK 1qf5A 151 :LFDKETFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64705 # 1lucA.238.194 read from T0547.t04.many.frag # found chain 1lucA in training set T0547 238 :ITEIHPLKK 1lucA 195 :IINTHEKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64706 # 1p1xA.238.206 read from T0547.t04.many.frag # found chain 1p1xA in training set T0547 238 :ITEIHPLKK 1p1xA 206 :VRTAEDAQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64707 # 1cliA.238.112 read from T0547.t04.many.frag # found chain 1cliA in template set T0547 238 :ITEIHPLKK 1cliA 113 :KLDVDTASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64708 # 1yt3A.238.59 read from T0547.t04.many.frag # found chain 1yt3A in training set T0547 238 :ITEIHPLKK 1yt3A 60 :ITDWSPLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64709 # 1h05A.238.79 read from T0547.t04.many.frag # found chain 1h05A in training set T0547 238 :ITEIHPLKK 1h05A 80 :THTSVALRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64710 # 1ed1A.238.50 read from T0547.t04.many.frag # found chain 1ed1A in template set T0547 238 :ITEIHPLKK 1ed1A 51 :LENKEGCQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64711 # 1n2zA.238.87 read from T0547.t04.many.frag # found chain 1n2zA in template set T0547 238 :ITEIHPLKK 1n2zA 109 :ATSIEQIAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64712 # 1m22A.238.344 read from T0547.t04.many.frag # found chain 1m22A in training set T0547 238 :ITEIHPLKK 1m22A 382 :LRSLADLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64713 # 1ytlA.238.156 read from T0547.t04.many.frag # found chain 1ytlA in training set T0547 238 :ITEIHPLKK 1ytlA 157 :WKKEEDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64714 # 1uf3A.238.73 read from T0547.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 238 :IT 1uf3A 74 :DA T0547 241 :IHPLKK 1uf3A 77 :IWEYLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=64716 # 2nacA.238.286 read from T0547.t04.many.frag # found chain 2nacA in template set T0547 238 :ITEIHPLKK 2nacA 287 :LCDRDAVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64717 # 3thiA.238.10 read from T0547.t04.many.frag # found chain 3thiA in template set T0547 238 :ITEIHPLKK 3thiA 19 :VPDPARFQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64718 # 1ie9A.238.177 read from T0547.t04.many.frag # found chain 1ie9A in training set Warning: unaligning (T0547)E240 (1ie9A)D348 because N (gamma') conformation "forbidden" or filtered. T0547 238 :IT 1ie9A 346 :VQ T0547 241 :IHPLKK 1ie9A 349 :AALIEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=64720 # 1e6iA.238.67 read from T0547.t04.many.frag # found chain 1e6iA in template set T0547 238 :ITEIHPLKK 1e6iA 386 :YQKMEDFIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64721 # 1dj7A.238.29 read from T0547.t04.many.frag # found chain 1dj7A in template set Warning: unaligning (T0547)E240 (1dj7A)D32 because N (gamma') conformation "forbidden" or filtered. T0547 238 :IT 1dj7A 30 :CS T0547 241 :IHPLKK 1dj7A 33 :LSVTAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=64723 # 1kr7A.238.35 read from T0547.t04.many.frag # found chain 1kr7A in training set T0547 238 :ITEIHPLKK 1kr7A 35 :LKGNAAYKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64724 # 1sr9A.238.256 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)I238 (1sr9A)M257 because G (3-10) conformation "forbidden" or filtered. T0547 239 :TEIHPLKK 1sr9A 258 :TTPNVYAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=64725 # 1yzxA.238.131 read from T0547.t04.many.frag # found chain 1yzxA in template set Warning: unaligning (T0547)E240 (1yzxA)E134 because P (beta_P) conformation "forbidden" or filtered. T0547 238 :IT 1yzxA 132 :IT T0547 241 :IHPLKK 1yzxA 135 :PQSILA Number of specific fragments extracted= 2 number of extra gaps= 1 total=64727 # 1urjA.238.606 read from T0547.t04.many.frag # found chain 1urjA in template set T0547 238 :ITEIHPLKK 1urjA 607 :ITNREALHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64728 # 1p35A.238.202 read from T0547.t04.many.frag # found chain 1p35A in template set T0547 238 :ITEIHPLKK 1p35A 204 :QFDGEQFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64729 # 1b25A.238.363 read from T0547.t04.many.frag # found chain 1b25A in template set Warning: unaligning (T0547)T239 (1b25A)G365 because T (delta_L) conformation "forbidden" or filtered. T0547 238 :I 1b25A 364 :F T0547 240 :EIHPLKK 1b25A 366 :DFKGAKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=64731 # 1vgjA.238.93 read from T0547.t04.many.frag # found chain 1vgjA in template set Warning: unaligning (T0547)E240 (1vgjA)N96 because L (left) conformation "forbidden" or filtered. T0547 238 :IT 1vgjA 94 :IE T0547 241 :IHPLKK 1vgjA 97 :DEIIRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=64733 # 1dpgA.238.88 read from T0547.t04.many.frag # found chain 1dpgA in template set T0547 238 :ITEIHPLKK 1dpgA 89 :AASYAVLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64734 # 2bogX.238.190 read from T0547.t04.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (2bogX)Y191 T0547 239 :TEIHPLKK 2bogX 192 :RWTADEVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=64735 # 1t1jA.238.18 read from T0547.t04.many.frag # found chain 1t1jA in training set Warning: unaligning (T0547)I238 (1t1jA)H12 because Y (epsilon') conformation "forbidden" or filtered. T0547 239 :TEIHPLKK 1t1jA 13 :ADAEVVEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=64736 # 2c5qA.238.188 read from T0547.t04.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)I238 (2c5qA)E189 because G (3-10) conformation "forbidden" or filtered. T0547 239 :TEIHPLKK 2c5qA 190 :TDISKLVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=64737 # 7odcA.239.202 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 239 :TEIHPLKKA 7odcA 203 :TDPDTFVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64738 # 2bk9A.239.52 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 239 :TEIHPLKKA 2bk9A 53 :SGNARFRAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=64739 # 1ie9A.239.178 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 239 :TEIHPLKKA 1ie9A 347 :QDAALIEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64740 # 1kr7A.239.36 read from T0547.t04.many.frag # found chain 1kr7A in training set T0547 239 :TEIHPLKKA 1kr7A 36 :KGNAAYKTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64741 # 1lucA.239.195 read from T0547.t04.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)E240 (1lucA)N197 because P (beta_P) conformation "forbidden" or filtered. T0547 239 :T 1lucA 196 :I T0547 241 :IHPLKKA 1lucA 198 :THEKKAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=64743 # 1xtpA.239.170 read from T0547.t04.many.frag # found chain 1xtpA in template set T0547 239 :TEIHPLKKA 1xtpA 171 :LTDADFVKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64744 # 1qf5A.239.151 read from T0547.t04.many.frag # found chain 1qf5A in template set T0547 239 :TEIHPLKKA 1qf5A 152 :FDKETFAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64745 # 1m22A.239.345 read from T0547.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)E240 (1m22A)S384 because Y (epsilon') conformation "forbidden" or filtered. T0547 239 :T 1m22A 383 :R T0547 241 :IHPLKKA 1m22A 385 :LADLIAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=64747 # 1n2zA.239.88 read from T0547.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)E240 (1n2zA)S111 because Y (epsilon') conformation "forbidden" or filtered. T0547 239 :T 1n2zA 110 :T T0547 241 :IHPLKKA 1n2zA 112 :IEQIANA Number of specific fragments extracted= 2 number of extra gaps= 1 total=64749 # 1yt3A.239.60 read from T0547.t04.many.frag # found chain 1yt3A in training set T0547 239 :TEIHPLKKA 1yt3A 61 :TDWSPLKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64750 # 1vgjA.239.94 read from T0547.t04.many.frag # found chain 1vgjA in template set Warning: unaligning (T0547)E240 (1vgjA)N96 because L (left) conformation "forbidden" or filtered. T0547 239 :T 1vgjA 95 :E T0547 241 :IHPLKKA 1vgjA 97 :DEIIREM Number of specific fragments extracted= 2 number of extra gaps= 1 total=64752 # 1ed1A.239.51 read from T0547.t04.many.frag # found chain 1ed1A in template set Warning: unaligning (T0547)E240 (1ed1A)N53 because Y (epsilon') conformation "forbidden" or filtered. T0547 239 :T 1ed1A 52 :E T0547 241 :IHPLKKA 1ed1A 54 :KEGCQKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=64754 # 1h05A.239.80 read from T0547.t04.many.frag # found chain 1h05A in training set T0547 239 :TEIHPLKKA 1h05A 81 :HTSVALRDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64755 # 1yzxA.239.132 read from T0547.t04.many.frag # found chain 1yzxA in template set T0547 239 :TEIHPLKKA 1yzxA 133 :TEPQSILAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64756 # 1cliA.239.113 read from T0547.t04.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)E240 (1cliA)D115 because N (gamma') conformation "forbidden" or filtered. T0547 239 :T 1cliA 114 :L T0547 241 :IHPLKKA 1cliA 116 :VDTASAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=64758 # 2f22A.239.1 read from T0547.t04.many.frag # found chain 2f22A in training set Warning: unaligning (T0547)T239 because of BadResidue code BAD_PEPTIDE at template residue (2f22A)M1 T0547 240 :EIHPLKKA 2f22A 2 :DTNGVLYA Number of specific fragments extracted= 1 number of extra gaps= 1 total=64759 # 1ye8A.239.112 read from T0547.t04.many.frag # found chain 1ye8A in training set T0547 239 :TEIHPLKKA 1ye8A 113 :LFSKKFRDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64760 # 1p1xA.239.207 read from T0547.t04.many.frag # found chain 1p1xA in training set T0547 239 :TEIHPLKKA 1p1xA 207 :RTAEDAQKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64761 # 1dj7A.239.30 read from T0547.t04.many.frag # found chain 1dj7A in template set T0547 239 :TEIHPLKKA 1dj7A 31 :SDLSVTAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64762 # 1urjA.239.607 read from T0547.t04.many.frag # found chain 1urjA in template set T0547 239 :TEIHPLKKA 1urjA 608 :TNREALHTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64763 # 1f60A.239.159 read from T0547.t04.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)T239 (1f60A)W160 because L (left) conformation "forbidden" or filtered. T0547 240 :EIHPLKKA 1f60A 161 :DESRFQEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=64764 # 1ytlA.239.157 read from T0547.t04.many.frag # found chain 1ytlA in training set T0547 239 :TEIHPLKKA 1ytlA 158 :KKEEDYLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64765 # 1r0dA.239.132 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 239 :TEIHPLKKA 1r0dA 898 :GKYEELIVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=64766 # 1sr9A.239.257 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)E240 (1sr9A)T259 because P (beta_P) conformation "forbidden" or filtered. T0547 239 :T 1sr9A 258 :T T0547 241 :IHPLKKA 1sr9A 260 :PNVYADS Number of specific fragments extracted= 2 number of extra gaps= 1 total=64768 # 1b25A.239.364 read from T0547.t04.many.frag # found chain 1b25A in template set Warning: unaligning (T0547)T239 (1b25A)G365 because T (delta_L) conformation "forbidden" or filtered. T0547 240 :EIHPLKKA 1b25A 366 :DFKGAKQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=64769 # 1t1jA.239.19 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 239 :TEIHPLKKA 1t1jA 13 :ADAEVVEQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64770 # 1hf8A.239.158 read from T0547.t04.many.frag # found chain 1hf8A in template set T0547 239 :TEIHPLKKA 1hf8A 159 :MNTEKLLKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64771 # 1n93X.239.257 read from T0547.t04.many.frag # found chain 1n93X in training set T0547 239 :TEIHPLKKA 1n93X 253 :LTIPVVAYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64772 # 1oltA.239.216 read from T0547.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)E240 (1oltA)T218 because E (beta_S) conformation "forbidden" or filtered. T0547 239 :T 1oltA 217 :Q T0547 241 :IHPLKKA 1oltA 219 :PESFAFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=64774 # 1p35A.239.203 read from T0547.t04.many.frag # found chain 1p35A in template set T0547 239 :TEIHPLKKA 1p35A 205 :FDGEQFEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64775 # 7odcA.240.203 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 240 :EIHPLKKAL 7odcA 204 :DPDTFVQAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64776 # 2bk9A.240.53 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 240 :EIHPLKKAL 2bk9A 54 :GNARFRAHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64777 # 1ie9A.240.179 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 240 :EIHPLKKAL 1ie9A 348 :DAALIEAIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64778 # 1kr7A.240.37 read from T0547.t04.many.frag # found chain 1kr7A in training set T0547 240 :EIHPLKKAL 1kr7A 37 :GNAAYKTQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64779 # 1lucA.240.196 read from T0547.t04.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)E240 (1lucA)N197 because P (beta_P) conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1lucA 198 :THEKKAQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=64780 # 1m22A.240.346 read from T0547.t04.many.frag # found chain 1m22A in training set T0547 240 :EIHPLKKAL 1m22A 384 :SLADLIAFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64781 # 1hf8A.240.159 read from T0547.t04.many.frag # found chain 1hf8A in template set T0547 240 :EIHPLKKAL 1hf8A 160 :NTEKLLKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64782 # 1r0dA.240.133 read from T0547.t04.many.frag # found chain 1r0dA in template set Warning: unaligning (T0547)E240 (1r0dA)K899 because P (beta_P) conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1r0dA 900 :YEELIVCS Number of specific fragments extracted= 1 number of extra gaps= 1 total=64783 # 1yzxA.240.133 read from T0547.t04.many.frag # found chain 1yzxA in template set T0547 240 :EIHPLKKAL 1yzxA 134 :EPQSILAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64784 # 1qf5A.240.152 read from T0547.t04.many.frag # found chain 1qf5A in template set T0547 240 :EIHPLKKAL 1qf5A 153 :DKETFAEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64785 # 1t1jA.240.20 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 240 :EIHPLKKAL 1t1jA 14 :DAEVVEQRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64786 # 1dj7A.240.31 read from T0547.t04.many.frag # found chain 1dj7A in template set T0547 240 :EIHPLKKAL 1dj7A 32 :DLSVTAVVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64787 # 2etsA.240.98 read from T0547.t04.many.frag # found chain 2etsA in template set T0547 240 :EIHPLKKAL 2etsA 87 :SRKLFIEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64788 # 1f60A.240.160 read from T0547.t04.many.frag # found chain 1f60A in training set T0547 240 :EIHPLKKAL 1f60A 161 :DESRFQEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64789 # 1ed1A.240.52 read from T0547.t04.many.frag # found chain 1ed1A in template set Warning: unaligning (T0547)E240 (1ed1A)N53 because Y (epsilon') conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1ed1A 54 :KEGCQKIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=64790 # 1urjA.240.608 read from T0547.t04.many.frag # found chain 1urjA in template set T0547 240 :EIHPLKKAL 1urjA 609 :NREALHTVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64791 # 1n93X.240.258 read from T0547.t04.many.frag # found chain 1n93X in training set T0547 240 :EIHPLKKAL 1n93X 254 :TIPVVAYEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64792 # 1h05A.240.81 read from T0547.t04.many.frag # found chain 1h05A in training set T0547 240 :EIHPLKKAL 1h05A 82 :TSVALRDAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=64793 # 1ki9A.240.143 read from T0547.t04.many.frag # found chain 1ki9A in template set T0547 240 :EIHPLKKAL 1ki9A 144 :TTAGIEEHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64794 # 2c5qA.240.190 read from T0547.t04.many.frag # found chain 2c5qA in training set T0547 240 :EIHPLKKAL 2c5qA 191 :DISKLVTYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64795 # 1cliA.240.114 read from T0547.t04.many.frag # found chain 1cliA in template set T0547 240 :EIHPLKKAL 1cliA 115 :DVDTASAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64796 # 1xtpA.240.171 read from T0547.t04.many.frag # found chain 1xtpA in template set T0547 240 :EIHPLKKAL 1xtpA 172 :TDADFVKFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64797 # 1vgjA.240.95 read from T0547.t04.many.frag # found chain 1vgjA in template set Warning: unaligning (T0547)E240 (1vgjA)N96 because L (left) conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1vgjA 97 :DEIIREMA Number of specific fragments extracted= 1 number of extra gaps= 1 total=64798 # 1oltA.240.217 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 240 :EIHPLKKAL 1oltA 218 :TPESFAFTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64799 # 1ytlA.240.158 read from T0547.t04.many.frag # found chain 1ytlA in training set T0547 240 :EIHPLKKAL 1ytlA 159 :KEEDYLKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64800 # 1dpgA.240.90 read from T0547.t04.many.frag # found chain 1dpgA in template set T0547 240 :EIHPLKKAL 1dpgA 91 :SYAVLKEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64801 # 2f22A.240.2 read from T0547.t04.many.frag # found chain 2f22A in training set T0547 240 :EIHPLKKAL 2f22A 2 :DTNGVLYAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64802 # 1b25A.240.365 read from T0547.t04.many.frag # found chain 1b25A in template set T0547 240 :EIHPLKKAL 1b25A 366 :DFKGAKQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64803 # 1vjvA.240.68 read from T0547.t04.many.frag # found chain 1vjvA in training set T0547 240 :EIHPLKKAL 1vjvA 153 :DEEIHKQIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64804 # 1sfsA.240.96 read from T0547.t04.many.frag # found chain 1sfsA in training set Warning: unaligning (T0547)E240 (1sfsA)G73 because S (epsilon) conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1sfsA 74 :YANGQVAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=64805 # 2bk9A.241.54 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 241 :IHPLKKALN 2bk9A 55 :NARFRAHAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64806 # 7odcA.241.204 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 241 :IHPLKKALN 7odcA 205 :PDTFVQAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64807 # 1ie9A.241.180 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 241 :IHPLKKALN 1ie9A 349 :AALIEAIQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64808 # 1kr7A.241.38 read from T0547.t04.many.frag # found chain 1kr7A in training set T0547 241 :IHPLKKALN 1kr7A 38 :NAAYKTQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64809 # 1hf8A.241.160 read from T0547.t04.many.frag # found chain 1hf8A in template set T0547 241 :IHPLKKALN 1hf8A 161 :TEKLLKTVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=64810 # 2etsA.241.99 read from T0547.t04.many.frag # found chain 2etsA in template set T0547 241 :IHPLKKALN 2etsA 88 :RKLFIEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64811 # 1t1jA.241.21 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 241 :IHPLKKALN 1t1jA 15 :AEVVEQRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64812 # 256bA.241.22 read from T0547.t04.many.frag # found chain 256bA in training set T0547 241 :IHPLKKALN 256bA 23 :AAQVKDALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64813 # 1r0dA.241.134 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 241 :IHPLKKALN 1r0dA 900 :YEELIVCSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=64814 # 1lucA.241.197 read from T0547.t04.many.frag # found chain 1lucA in training set T0547 241 :IHPLKKALN 1lucA 198 :THEKKAQLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64815 # 1f60A.241.161 read from T0547.t04.many.frag # found chain 1f60A in training set T0547 241 :IHPLKKALN 1f60A 162 :ESRFQEIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64816 # 1ed1A.241.53 read from T0547.t04.many.frag # found chain 1ed1A in template set T0547 241 :IHPLKKALN 1ed1A 54 :KEGCQKILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64817 # 1dj7A.241.32 read from T0547.t04.many.frag # found chain 1dj7A in template set T0547 241 :IHPLKKALN 1dj7A 33 :LSVTAVVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64818 # 1o7qA.241.208 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 241 :IHPLKKALN 1o7qA 288 :PTQVLNITQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64819 # 2yhx.241.19 read from T0547.t04.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)I241 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2yhx)P21 Warning: unaligning (T0547)H242 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X22 T0547 243 :PLKKALN 2yhx 23 :ILQAVVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=64820 # 1ki9A.241.144 read from T0547.t04.many.frag # found chain 1ki9A in template set T0547 241 :IHPLKKALN 1ki9A 145 :TAGIEEHQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64821 # 1yzxA.241.134 read from T0547.t04.many.frag # found chain 1yzxA in template set T0547 241 :IHPLKKALN 1yzxA 135 :PQSILAAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64822 # 1m22A.241.347 read from T0547.t04.many.frag # found chain 1m22A in training set T0547 241 :IHPLKKALN 1m22A 385 :LADLIAFNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64823 # 1urjA.241.609 read from T0547.t04.many.frag # found chain 1urjA in template set T0547 241 :IHPLKKALN 1urjA 610 :REALHTVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64824 # 1n93X.241.259 read from T0547.t04.many.frag # found chain 1n93X in training set T0547 241 :IHPLKKALN 1n93X 255 :IPVVAYEIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64825 # 1vgjA.241.96 read from T0547.t04.many.frag # found chain 1vgjA in template set T0547 241 :IHPLKKALN 1vgjA 97 :DEIIREMAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64826 # 1ye8A.241.114 read from T0547.t04.many.frag # found chain 1ye8A in training set T0547 241 :IHPLKKALN 1ye8A 115 :SKKFRDLVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64827 # 1sfsA.241.97 read from T0547.t04.many.frag # found chain 1sfsA in training set T0547 241 :IHPLKKALN 1sfsA 74 :YANGQVAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64828 # 1n2zA.241.90 read from T0547.t04.many.frag # found chain 1n2zA in template set T0547 241 :IHPLKKALN 1n2zA 112 :IEQIANALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64829 # 1dpgA.241.91 read from T0547.t04.many.frag # found chain 1dpgA in template set T0547 241 :IHPLKKALN 1dpgA 92 :YAVLKEAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64830 # 1qf5A.241.153 read from T0547.t04.many.frag # found chain 1qf5A in template set T0547 241 :IHPLKKALN 1qf5A 154 :KETFAEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64831 # 1b25A.241.366 read from T0547.t04.many.frag # found chain 1b25A in template set T0547 241 :IHPLKKALN 1b25A 367 :FKGAKQLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64832 # 1oltA.241.218 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 241 :IHPLKKALN 1oltA 219 :PESFAFTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64833 # 1xtpA.241.172 read from T0547.t04.many.frag # found chain 1xtpA in template set T0547 241 :IHPLKKALN 1xtpA 173 :DADFVKFFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64834 # 1n5uA.241.227 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 241 :IHPLKKALN 1n5uA 228 :FAEVSKLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64835 # 7odcA.242.205 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 242 :HPLKKALNE 7odcA 206 :DTFVQAVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64836 # 2bk9A.242.55 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 242 :HPLKKALNE 2bk9A 56 :ARFRAHAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64837 # 1ie9A.242.181 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 242 :HPLKKALNE 1ie9A 350 :ALIEAIQDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64838 # 256bA.242.23 read from T0547.t04.many.frag # found chain 256bA in training set T0547 242 :HPLKKALNE 256bA 24 :AQVKDALTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64839 # 1yb0A.242.98 read from T0547.t04.many.frag # found chain 1yb0A in template set T0547 242 :HPLKKALNE 1yb0A 99 :DRYYKAENN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64840 # 1kr7A.242.39 read from T0547.t04.many.frag # found chain 1kr7A in training set T0547 242 :HPLKKALNE 1kr7A 39 :AAYKTQAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64841 # 1hf8A.242.161 read from T0547.t04.many.frag # found chain 1hf8A in template set T0547 242 :HPLKKALNE 1hf8A 162 :EKLLKTVPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64842 # 2etsA.242.100 read from T0547.t04.many.frag # found chain 2etsA in template set T0547 242 :HPLKKALNE 2etsA 89 :KLFIEKLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64843 # 1f60A.242.162 read from T0547.t04.many.frag # found chain 1f60A in training set T0547 242 :HPLKKALNE 1f60A 163 :SRFQEIVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64844 # 2yhx.242.20 read from T0547.t04.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)H242 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X22 T0547 243 :PLKKALNE 2yhx 23 :ILQAVVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=64845 # 1t1jA.242.22 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 242 :HPLKKALNE 1t1jA 16 :EVVEQRFRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64846 # 1o7qA.242.209 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 242 :HPLKKALNE 1o7qA 289 :TQVLNITQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64847 # 1lucA.242.198 read from T0547.t04.many.frag # found chain 1lucA in training set T0547 242 :HPLKKALNE 1lucA 199 :HEKKAQLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64848 # 1n5uA.242.228 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 242 :HPLKKALNE 1n5uA 229 :AEVSKLVTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64849 # 1r0dA.242.135 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 242 :HPLKKALNE 1r0dA 901 :EELIVCSHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64850 # 1sfsA.242.98 read from T0547.t04.many.frag # found chain 1sfsA in training set T0547 242 :HPLKKALNE 1sfsA 75 :ANGQVAARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64851 # 1yzxA.242.135 read from T0547.t04.many.frag # found chain 1yzxA in template set T0547 242 :HPLKKALNE 1yzxA 136 :QSILAAAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64852 # 1ed1A.242.54 read from T0547.t04.many.frag # found chain 1ed1A in template set T0547 242 :HPLKKALNE 1ed1A 55 :EGCQKILSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64853 # 1hz4A.242.109 read from T0547.t04.many.frag # found chain 1hz4A in training set T0547 242 :HPLKKALNE 1hz4A 108 :QTAWETQEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64854 # 1muwA.242.108 read from T0547.t04.many.frag # found chain 1muwA in training set T0547 242 :HPLKKALNE 1muwA 109 :DVRRYALRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64855 # 1dj7A.242.33 read from T0547.t04.many.frag # found chain 1dj7A in template set T0547 242 :HPLKKALNE 1dj7A 34 :SVTAVVIEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64856 # 1ki9A.242.145 read from T0547.t04.many.frag # found chain 1ki9A in template set T0547 242 :HPLKKALNE 1ki9A 146 :AGIEEHQIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=64857 # 1urjA.242.610 read from T0547.t04.many.frag # found chain 1urjA in template set T0547 242 :HPLKKALNE 1urjA 611 :EALHTVVNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64858 # 2f22A.242.4 read from T0547.t04.many.frag # found chain 2f22A in training set T0547 242 :HPLKKALNE 2f22A 4 :NGVLYAANM Number of specific fragments extracted= 1 number of extra gaps= 0 total=64859 # 1knwA.242.198 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 242 :HPLKKALNE 1knwA 199 :AHLEQVCGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64860 # 1zb1A.242.145 read from T0547.t04.many.frag # found chain 1zb1A in template set T0547 242 :HPLKKALNE 1zb1A 141 :KNSIANLTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64861 # 1dpgA.242.92 read from T0547.t04.many.frag # found chain 1dpgA in template set T0547 242 :HPLKKALNE 1dpgA 93 :AVLKEAIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64862 1xlyA expands to /projects/compbio/data/pdb/1xly.pdb.gz 1xlyA:# 1xlyA.242.47 read from T0547.t04.many.frag # adding 1xlyA to template set # found chain 1xlyA in template set T0547 242 :HPLKKALNE 1xlyA 53 :TTLIKFVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64863 # 1c93A.242.100 read from T0547.t04.many.frag # found chain 1c93A in template set T0547 242 :HPLKKALNE 1c93A 106 :QAASAFAKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64864 # 1cliA.242.116 read from T0547.t04.many.frag # found chain 1cliA in template set T0547 242 :HPLKKALNE 1cliA 117 :DTASAVISG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64865 # 2bk9A.243.56 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 243 :PLKKALNEA 2bk9A 57 :RFRAHAGRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64866 # 7odcA.243.206 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 243 :PLKKALNEA 7odcA 207 :TFVQAVSDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64867 # 2etsA.243.101 read from T0547.t04.many.frag # found chain 2etsA in template set T0547 243 :PLKKALNEA 2etsA 90 :LFIEKLKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64868 # 1hf8A.243.162 read from T0547.t04.many.frag # found chain 1hf8A in template set T0547 243 :PLKKALNEA 1hf8A 163 :KLLKTVPII Number of specific fragments extracted= 1 number of extra gaps= 0 total=64869 # 1yb0A.243.99 read from T0547.t04.many.frag # found chain 1yb0A in template set T0547 243 :PLKKALNEA 1yb0A 100 :RYYKAENNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64870 # 1o7qA.243.210 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 243 :PLKKALNEA 1o7qA 290 :QVLNITQEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=64871 # 1t1jA.243.23 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 243 :PLKKALNEA 1t1jA 17 :VVEQRFRAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=64872 # 1kr7A.243.40 read from T0547.t04.many.frag # found chain 1kr7A in training set T0547 243 :PLKKALNEA 1kr7A 40 :AYKTQAGKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64873 # 256bA.243.24 read from T0547.t04.many.frag # found chain 256bA in training set T0547 243 :PLKKALNEA 256bA 25 :QVKDALTKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=64874 # 1ie9A.243.182 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 243 :PLKKALNEA 1ie9A 351 :LIEAIQDRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64875 # 1r0dA.243.136 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 243 :PLKKALNEA 1r0dA 902 :ELIVCSHEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64876 # 1dj7A.243.34 read from T0547.t04.many.frag # found chain 1dj7A in template set T0547 243 :PLKKALNEA 1dj7A 35 :VTAVVIEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64877 # 2yhx.243.21 read from T0547.t04.many.frag # found chain 2yhx in template set T0547 243 :PLKKALNEA 2yhx 23 :ILQAVVSIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64878 # 1n5uA.243.229 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 243 :PLKKALNEA 1n5uA 230 :EVSKLVTDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64879 # 1ki9A.243.146 read from T0547.t04.many.frag # found chain 1ki9A in template set T0547 243 :PLKKALNEA 1ki9A 147 :GIEEHQIMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64880 # 1f60A.243.163 read from T0547.t04.many.frag # found chain 1f60A in training set T0547 243 :PLKKALNEA 1f60A 164 :RFQEIVKET Number of specific fragments extracted= 1 number of extra gaps= 0 total=64881 # 1muwA.243.109 read from T0547.t04.many.frag # found chain 1muwA in training set T0547 243 :PLKKALNEA 1muwA 110 :VRRYALRKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64882 # 1ei6A.243.212 read from T0547.t04.many.frag # found chain 1ei6A in template set T0547 243 :PLKKALNEA 1ei6A 214 :EANAFYAMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=64883 # 1lucA.243.199 read from T0547.t04.many.frag # found chain 1lucA in training set T0547 243 :PLKKALNEA 1lucA 200 :EKKAQLDLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64884 # 1wmwA.243.129 read from T0547.t04.many.frag # found chain 1wmwA in training set T0547 243 :PLKKALNEA 1wmwA 130 :EVLLEFHEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64885 # 1zb1A.243.146 read from T0547.t04.many.frag # found chain 1zb1A in template set T0547 243 :PLKKALNEA 1zb1A 142 :NSIANLTKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64886 # 1n93X.243.261 read from T0547.t04.many.frag # found chain 1n93X in training set T0547 243 :PLKKALNEA 1n93X 257 :VVAYEIRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64887 1nigA expands to /projects/compbio/data/pdb/1nig.pdb.gz 1nigA:Skipped atom 144, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 146, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 148, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 309, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 311, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 338, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 340, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 342, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 346, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 359, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 361, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 363, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 365, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 367, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 369, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 371, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 393, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 395, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 397, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 399, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 401, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 403, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 405, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 411, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 413, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 415, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 417, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 419, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 425, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 427, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 429, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 431, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 570, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 572, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 709, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 711, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 713, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 715, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 717, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 723, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 725, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 727, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 729, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 731, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 743, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 745, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 747, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 749, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 751, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 753, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 755, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 757, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 759, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 761, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 765, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 767, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 769, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 771, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 775, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 777, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 779, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 781, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 785, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 787, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 789, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 791, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 793, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 795, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 797, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 897, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 899, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 987, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 989, because occupancy 0.000 <= existing 0.500 in 1nigA Skipped atom 991, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 993, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 995, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 997, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 999, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 1022, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 1024, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 1026, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 1028, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 1030, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 1118, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 1120, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 1122, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 1124, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 1126, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 1163, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 1165, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 1167, because occupancy 0.500 <= existing 0.500 in 1nigA Skipped atom 1169, because occupancy 0.500 <= existing 0.500 in 1nigA # 1nigA.243.21 read from T0547.t04.many.frag # adding 1nigA to template set # found chain 1nigA in template set T0547 243 :PLKKALNEA 1nigA 22 :KFRSEIEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64888 # 2f22A.243.5 read from T0547.t04.many.frag # found chain 2f22A in training set T0547 243 :PLKKALNEA 2f22A 5 :GVLYAANMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64889 # 1epuA.243.193 read from T0547.t04.many.frag # found chain 1epuA in template set T0547 243 :PLKKALNEA 1epuA 194 :ENASFAQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64890 # 1o5hA.243.83 read from T0547.t04.many.frag # found chain 1o5hA in template set T0547 243 :PLKKALNEA 1o5hA 72 :KLFDLAKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64891 # 1r5yA.243.166 read from T0547.t04.many.frag # found chain 1r5yA in training set T0547 243 :PLKKALNEA 1r5yA 167 :RAASSMERS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64892 # 1hz4A.243.110 read from T0547.t04.many.frag # found chain 1hz4A in training set T0547 243 :PLKKALNEA 1hz4A 109 :TAWETQEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64893 # 1xlyA.243.48 read from T0547.t04.many.frag # found chain 1xlyA in template set T0547 243 :PLKKALNEA 1xlyA 54 :TLIKFVKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64894 # 1urjA.243.611 read from T0547.t04.many.frag # found chain 1urjA in template set T0547 243 :PLKKALNEA 1urjA 612 :ALHTVVNNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64895 # 7odcA.244.207 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 244 :LKKALNEAG 7odcA 208 :FVQAVSDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64896 # 2bk9A.244.57 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 244 :LKKALNEAG 2bk9A 58 :FRAHAGRII Number of specific fragments extracted= 1 number of extra gaps= 0 total=64897 # 1hf8A.244.163 read from T0547.t04.many.frag # found chain 1hf8A in template set T0547 244 :LKKALNEAG 1hf8A 164 :LLKTVPIIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64898 # 1o7qA.244.211 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 244 :LKKALNEAG 1o7qA 291 :VLNITQECF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64899 # 1yb0A.244.100 read from T0547.t04.many.frag # found chain 1yb0A in template set T0547 244 :LKKALNEAG 1yb0A 101 :YYKAENNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64900 # 1t1jA.244.24 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 244 :LKKALNEAG 1t1jA 18 :VEQRFRACN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64901 # 2etsA.244.102 read from T0547.t04.many.frag # found chain 2etsA in template set T0547 244 :LKKALNEAG 2etsA 91 :FIEKLKSVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64902 # 1ie9A.244.183 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 244 :LKKALNEAG 1ie9A 352 :IEAIQDRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64903 # 256bA.244.25 read from T0547.t04.many.frag # found chain 256bA in training set T0547 244 :LKKALNEAG 256bA 26 :VKDALTKMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64904 # 1r0dA.244.137 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 244 :LKKALNEAG 1r0dA 903 :LIVCSHEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64905 # 1muwA.244.110 read from T0547.t04.many.frag # found chain 1muwA in training set T0547 244 :LKKALNEAG 1muwA 111 :RRYALRKTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64906 # 1n5uA.244.230 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 244 :LKKALNEAG 1n5uA 231 :VSKLVTDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64907 # 1kr7A.244.41 read from T0547.t04.many.frag # found chain 1kr7A in training set T0547 244 :LKKALNEAG 1kr7A 41 :YKTQAGKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64908 # 1f60A.244.164 read from T0547.t04.many.frag # found chain 1f60A in training set T0547 244 :LKKALNEAG 1f60A 165 :FQEIVKETS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64909 # 1ki9A.244.147 read from T0547.t04.many.frag # found chain 1ki9A in template set T0547 244 :LKKALNEAG 1ki9A 148 :IEEHQIMNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64910 # 2yhx.244.22 read from T0547.t04.many.frag # found chain 2yhx in template set T0547 244 :LKKALNEAG 2yhx 24 :LQAVVSILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64911 # 1epuA.244.194 read from T0547.t04.many.frag # found chain 1epuA in template set T0547 244 :LKKALNEAG 1epuA 195 :NASFAQLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64912 # 1o5hA.244.84 read from T0547.t04.many.frag # found chain 1o5hA in template set T0547 244 :LKKALNEAG 1o5hA 73 :LFDLAKKDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=64913 # 1nigA.244.22 read from T0547.t04.many.frag # found chain 1nigA in template set T0547 244 :LKKALNEAG 1nigA 23 :FRSEIEAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64914 # 1r5yA.244.167 read from T0547.t04.many.frag # found chain 1r5yA in training set T0547 244 :LKKALNEAG 1r5yA 168 :AASSMERSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=64915 # 1dj7A.244.35 read from T0547.t04.many.frag # found chain 1dj7A in template set T0547 244 :LKKALNEAG 1dj7A 36 :TAVVIEGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64916 # 1wmwA.244.130 read from T0547.t04.many.frag # found chain 1wmwA in training set T0547 244 :LKKALNEAG 1wmwA 131 :VLLEFHEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64917 # 1qlwA.244.261 read from T0547.t04.many.frag # found chain 1qlwA in training set T0547 244 :LKKALNEAG 1qlwA 262 :WAPRLKACH Number of specific fragments extracted= 1 number of extra gaps= 0 total=64918 # 1xlyA.244.49 read from T0547.t04.many.frag # found chain 1xlyA in template set T0547 244 :LKKALNEAG 1xlyA 55 :LIKFVKKLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64919 # 2f22A.244.6 read from T0547.t04.many.frag # found chain 2f22A in training set T0547 244 :LKKALNEAG 2f22A 6 :VLYAANMTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64920 # 1lucA.244.200 read from T0547.t04.many.frag # found chain 1lucA in training set T0547 244 :LKKALNEAG 1lucA 201 :KKAQLDLYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64921 # 1c93A.244.102 read from T0547.t04.many.frag # found chain 1c93A in template set T0547 244 :LKKALNEAG 1c93A 108 :ASAFAKQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64922 # 1hz4A.244.111 read from T0547.t04.many.frag # found chain 1hz4A in training set T0547 244 :LKKALNEAG 1hz4A 110 :AWETQEKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64923 # 1rz2A.244.41 read from T0547.t04.many.frag # found chain 1rz2A in training set T0547 244 :LKKALNEAG 1rz2A 42 :NRKVMAEAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64924 # 1ei6A.244.213 read from T0547.t04.many.frag # found chain 1ei6A in template set T0547 244 :LKKALNEAG 1ei6A 215 :ANAFYAMMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64925 # 7odcA.245.208 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 245 :KKALNEAGN 7odcA 209 :VQAVSDARC Number of specific fragments extracted= 1 number of extra gaps= 0 total=64926 # 2bk9A.245.58 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 245 :KKALNEAGN 2bk9A 59 :RAHAGRIIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64927 # 2etsA.245.103 read from T0547.t04.many.frag # found chain 2etsA in template set T0547 245 :KKALNEAGN 2etsA 92 :IEKLKSVQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64928 # 1o7qA.245.212 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 245 :KKALNEAGN 1o7qA 292 :LNITQECFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64929 # 1hf8A.245.164 read from T0547.t04.many.frag # found chain 1hf8A in template set T0547 245 :KKALNEAGN 1hf8A 165 :LKTVPIIQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64930 # 1t1jA.245.25 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 245 :KKALNEAGN 1t1jA 19 :EQRFRACNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64931 # 256bA.245.26 read from T0547.t04.many.frag # found chain 256bA in training set T0547 245 :KKALNEAGN 256bA 27 :KDALTKMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64932 # 1kr7A.245.42 read from T0547.t04.many.frag # found chain 1kr7A in training set T0547 245 :KKALNEAGN 1kr7A 42 :KTQAGKTVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64933 # 1qlwA.245.262 read from T0547.t04.many.frag # found chain 1qlwA in training set T0547 245 :KKALNEAGN 1qlwA 263 :APRLKACHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64934 # 1yb0A.245.101 read from T0547.t04.many.frag # found chain 1yb0A in template set T0547 245 :KKALNEAGN 1yb0A 102 :YKAENNAVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64935 # 1ie9A.245.184 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 245 :KKALNEAGN 1ie9A 353 :EAIQDRLSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64936 # 1r0dA.245.138 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 245 :KKALNEAGN 1r0dA 904 :IVCSHEIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64937 # 1nigA.245.23 read from T0547.t04.many.frag # found chain 1nigA in template set T0547 245 :KKALNEAGN 1nigA 24 :RSEIEAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64938 # 1o5hA.245.85 read from T0547.t04.many.frag # found chain 1o5hA in template set T0547 245 :KKALNEAGN 1o5hA 74 :FDLAKKDME Number of specific fragments extracted= 1 number of extra gaps= 0 total=64939 # 1n5uA.245.231 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 245 :KKALNEAGN 1n5uA 232 :SKLVTDLTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64940 # 1f60A.245.165 read from T0547.t04.many.frag # found chain 1f60A in training set T0547 245 :KKALNEAGN 1f60A 166 :QEIVKETSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64941 # 1r5yA.245.168 read from T0547.t04.many.frag # found chain 1r5yA in training set T0547 245 :KKALNEAGN 1r5yA 169 :ASSMERSMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64942 # 2yhx.245.23 read from T0547.t04.many.frag # found chain 2yhx in template set T0547 245 :KKALNEAGN 2yhx 25 :QAVVSILTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64943 # 1dj7A.245.36 read from T0547.t04.many.frag # found chain 1dj7A in template set T0547 245 :KKALNEAGN 1dj7A 37 :AVVIEGLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64944 # 1ei6A.245.214 read from T0547.t04.many.frag # found chain 1ei6A in template set T0547 245 :KKALNEAGN 1ei6A 216 :NAFYAMMDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64945 # 1muwA.245.111 read from T0547.t04.many.frag # found chain 1muwA in training set T0547 245 :KKALNEAGN 1muwA 112 :RYALRKTIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64946 # 2cbiA.245.240 read from T0547.t04.many.frag # found chain 2cbiA in template set T0547 245 :KKALNEAGN 2cbiA 271 :EEDFNHLIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64947 # 1wmwA.245.131 read from T0547.t04.many.frag # found chain 1wmwA in training set T0547 245 :KKALNEAGN 1wmwA 132 :LLEFHEVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64948 # 1x91A.245.101 read from T0547.t04.many.frag # found chain 1x91A in training set T0547 245 :KKALNEAGN 1x91A 98 :NMKVSAALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64949 # 1ki9A.245.148 read from T0547.t04.many.frag # found chain 1ki9A in template set T0547 245 :KKALNEAGN 1ki9A 149 :EEHQIMNRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64950 # 1rz2A.245.42 read from T0547.t04.many.frag # found chain 1rz2A in training set T0547 245 :KKALNEAGN 1rz2A 43 :RKVMAEAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64951 # 2f22A.245.7 read from T0547.t04.many.frag # found chain 2f22A in training set T0547 245 :KKALNEAGN 2f22A 7 :LYAANMTNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64952 # 1xlyA.245.50 read from T0547.t04.many.frag # found chain 1xlyA in template set T0547 245 :KKALNEAGN 1xlyA 56 :IKFVKKLRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64953 # 1zb1A.245.148 read from T0547.t04.many.frag # found chain 1zb1A in template set T0547 245 :KKALNEAGN 1zb1A 144 :IANLTKAFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64954 # 1lucA.245.201 read from T0547.t04.many.frag # found chain 1lucA in training set T0547 245 :KKALNEAGN 1lucA 202 :KAQLDLYNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=64955 # 7odcA.246.209 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 246 :KALNEAGNI 7odcA 210 :QAVSDARCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64956 # 2bk9A.246.59 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 246 :KALNEAGNI 2bk9A 60 :AHAGRIIRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64957 # 2etsA.246.104 read from T0547.t04.many.frag # found chain 2etsA in template set T0547 246 :KALNEAGNI 2etsA 93 :EKLKSVQYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=64958 # 1o7qA.246.213 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 246 :KALNEAGNI 1o7qA 293 :NITQECFKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64959 # 1t1jA.246.26 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 246 :KALNEAGNI 1t1jA 20 :QRFRACNEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64960 # 1qlwA.246.263 read from T0547.t04.many.frag # found chain 1qlwA in training set T0547 246 :KALNEAGNI 1qlwA 264 :PRLKACHAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64961 # 1hf8A.246.165 read from T0547.t04.many.frag # found chain 1hf8A in template set T0547 246 :KALNEAGNI 1hf8A 166 :KTVPIIQNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=64962 # 1ie9A.246.185 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 246 :KALNEAGNI 1ie9A 354 :AIQDRLSNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=64963 # 1yb0A.246.102 read from T0547.t04.many.frag # found chain 1yb0A in template set T0547 246 :KALNEAGNI 1yb0A 103 :KAENNAVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64964 # 1o5hA.246.86 read from T0547.t04.many.frag # found chain 1o5hA in template set T0547 246 :KALNEAGNI 1o5hA 75 :DLAKKDMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64965 # 256bA.246.27 read from T0547.t04.many.frag # found chain 256bA in training set T0547 246 :KALNEAGNI 256bA 28 :DALTKMRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64966 # 1nigA.246.24 read from T0547.t04.many.frag # found chain 1nigA in template set T0547 246 :KALNEAGNI 1nigA 25 :SEIEAAEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64967 # 2cbiA.246.241 read from T0547.t04.many.frag # found chain 2cbiA in template set T0547 246 :KALNEAGNI 2cbiA 272 :EDFNHLITK Number of specific fragments extracted= 1 number of extra gaps= 0 total=64968 # 1ei6A.246.215 read from T0547.t04.many.frag # found chain 1ei6A in template set T0547 246 :KALNEAGNI 1ei6A 217 :AFYAMMDSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64969 # 1r0dA.246.139 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 246 :KALNEAGNI 1r0dA 905 :VCSHEIAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64970 # 1muwA.246.112 read from T0547.t04.many.frag # found chain 1muwA in training set T0547 246 :KALNEAGNI 1muwA 113 :YALRKTIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=64971 # 1n5uA.246.232 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 246 :KALNEAGNI 1n5uA 233 :KLVTDLTKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64972 # 1kr7A.246.43 read from T0547.t04.many.frag # found chain 1kr7A in training set T0547 246 :KALNEAGNI 1kr7A 43 :TQAGKTVDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64973 # 1r5yA.246.169 read from T0547.t04.many.frag # found chain 1r5yA in training set T0547 246 :KALNEAGNI 1r5yA 170 :SSMERSMRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=64974 # 1xlyA.246.51 read from T0547.t04.many.frag # found chain 1xlyA in template set T0547 246 :KALNEAGNI 1xlyA 57 :KFVKKLRFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64975 # 1f60A.246.166 read from T0547.t04.many.frag # found chain 1f60A in training set T0547 246 :KALNEAGNI 1f60A 167 :EIVKETSNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64976 # 2yhx.246.24 read from T0547.t04.many.frag # found chain 2yhx in template set T0547 246 :KALNEAGNI 2yhx 26 :AVVSILTTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64977 # 1dj7A.246.37 read from T0547.t04.many.frag # found chain 1dj7A in template set T0547 246 :KALNEAGNI 1dj7A 38 :VVIEGLARH Number of specific fragments extracted= 1 number of extra gaps= 0 total=64978 # 1ki9A.246.149 read from T0547.t04.many.frag # found chain 1ki9A in template set T0547 246 :KALNEAGNI 1ki9A 150 :EHQIMNRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64979 # 1kxu.246.147 read from T0547.t04.many.frag # found chain 1kxu in template set T0547 246 :KALNEAGNI 1kxu 138 :KALEQILEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=64980 # 1wmwA.246.132 read from T0547.t04.many.frag # found chain 1wmwA in training set T0547 246 :KALNEAGNI 1wmwA 133 :LEFHEVVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=64981 # 1x91A.246.102 read from T0547.t04.many.frag # found chain 1x91A in training set T0547 246 :KALNEAGNI 1x91A 99 :MKVSAALDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=64982 # 1rz2A.246.43 read from T0547.t04.many.frag # found chain 1rz2A in training set T0547 246 :KALNEAGNI 1rz2A 44 :KVMAEAQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64983 1g73A expands to /projects/compbio/data/pdb/1g73.pdb.gz 1g73A:# 1g73A.246.103 read from T0547.t04.many.frag # adding 1g73A to template set # found chain 1g73A in template set T0547 246 :KALNEAGNI 1g73A 104 :TAVGLSEMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64984 # 2a40B.246.141 read from T0547.t04.many.frag # found chain 2a40B in training set T0547 246 :KALNEAGNI 2a40B 142 :AEINSLYDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64985 # 1o7qA.247.214 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 247 :ALNEAGNIY 1o7qA 294 :ITQECFKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64986 # 7odcA.247.210 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 247 :ALNEAGNIY 7odcA 211 :AVSDARCVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64987 # 2bk9A.247.60 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 247 :ALNEAGNIY 2bk9A 61 :HAGRIIRVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64988 # 2etsA.247.105 read from T0547.t04.many.frag # found chain 2etsA in template set T0547 247 :ALNEAGNIY 2etsA 94 :KLKSVQYDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64989 # 1t1jA.247.27 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 247 :ALNEAGNIY 1t1jA 21 :RFRACNEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64990 # 1o5hA.247.87 read from T0547.t04.many.frag # found chain 1o5hA in template set T0547 247 :ALNEAGNIY 1o5hA 76 :LAKKDMEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64991 # 1qlwA.247.264 read from T0547.t04.many.frag # found chain 1qlwA in training set T0547 247 :ALNEAGNIY 1qlwA 265 :RLKACHAFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=64992 # 1r0dA.247.140 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 247 :ALNEAGNIY 1r0dA 906 :CSHEIAAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=64993 # 1ie9A.247.186 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 247 :ALNEAGNIY 1ie9A 355 :IQDRLSNTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64994 # 1hf8A.247.166 read from T0547.t04.many.frag # found chain 1hf8A in template set T0547 247 :ALNEAGNIY 1hf8A 167 :TVPIIQNQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=64995 # 1ei6A.247.216 read from T0547.t04.many.frag # found chain 1ei6A in template set T0547 247 :ALNEAGNIY 1ei6A 218 :FYAMMDSYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=64996 # 1yb0A.247.103 read from T0547.t04.many.frag # found chain 1yb0A in template set T0547 247 :ALNEAGNIY 1yb0A 104 :AENNAVDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=64997 # 2cbiA.247.242 read from T0547.t04.many.frag # found chain 2cbiA in template set T0547 247 :ALNEAGNIY 2cbiA 273 :DFNHLITKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=64998 # 1nigA.247.25 read from T0547.t04.many.frag # found chain 1nigA in template set T0547 247 :ALNEAGNIY 1nigA 26 :EIEAAEAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=64999 # 1wmwA.247.133 read from T0547.t04.many.frag # found chain 1wmwA in training set T0547 247 :ALNEAGNIY 1wmwA 134 :EFHEVVRRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65000 # 1r5yA.247.170 read from T0547.t04.many.frag # found chain 1r5yA in training set T0547 247 :ALNEAGNIY 1r5yA 171 :SMERSMRWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65001 # 256bA.247.28 read from T0547.t04.many.frag # found chain 256bA in training set T0547 247 :ALNEAGNIY 256bA 29 :ALTKMRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65002 # 1x91A.247.103 read from T0547.t04.many.frag # found chain 1x91A in training set T0547 247 :ALNEAGNIY 1x91A 100 :KVSAALDGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65003 # 1rz2A.247.44 read from T0547.t04.many.frag # found chain 1rz2A in training set T0547 247 :ALNEAGNIY 1rz2A 45 :VMAEAQNIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65004 # 1xlyA.247.52 read from T0547.t04.many.frag # found chain 1xlyA in template set T0547 247 :ALNEAGNIY 1xlyA 58 :FVKKLRFYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=65005 # 1dj7A.247.38 read from T0547.t04.many.frag # found chain 1dj7A in template set T0547 247 :ALNEAGNIY 1dj7A 39 :VIEGLARHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65006 # 1e19A.247.28 read from T0547.t04.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)I254 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1e19A)I37 Warning: unaligning (T0547)Y255 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1e19A)I37 T0547 247 :ALNEAGN 1e19A 29 :NVRKTAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=65007 # 2a40B.247.142 read from T0547.t04.many.frag # found chain 2a40B in training set T0547 247 :ALNEAGNIY 2a40B 143 :EINSLYDVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65008 # 1qkrA.247.43 read from T0547.t04.many.frag # found chain 1qkrA in training set T0547 247 :ALNEAGNIY 1qkrA 922 :AAKRMALLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=65009 # 1otsA.247.268 read from T0547.t04.many.frag # found chain 1otsA in template set T0547 247 :ALNEAGNIY 1otsA 269 :FNKWVLGMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65010 # 1zb1A.247.150 read from T0547.t04.many.frag # found chain 1zb1A in template set T0547 247 :ALNEAGNIY 1zb1A 146 :NLTKAFSCF Number of specific fragments extracted= 1 number of extra gaps= 0 total=65011 # 1kr7A.247.44 read from T0547.t04.many.frag # found chain 1kr7A in training set T0547 247 :ALNEAGNIY 1kr7A 44 :QAGKTVDYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65012 # 1o9iA.247.146 read from T0547.t04.many.frag # found chain 1o9iA in training set T0547 247 :ALNEAGNIY 1o9iA 147 :RESEARLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65013 # 1muwA.247.113 read from T0547.t04.many.frag # found chain 1muwA in training set T0547 247 :ALNEAGNIY 1muwA 114 :ALRKTIRNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65014 # 1hz4A.247.114 read from T0547.t04.many.frag # found chain 1hz4A in training set T0547 247 :ALNEAGNIY 1hz4A 113 :TQEKAFQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65015 # 7odcA.248.211 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 248 :LNEAGNIYT 7odcA 212 :VSDARCVFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=65016 # 1t1jA.248.28 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 248 :LNEAGNIYT 1t1jA 22 :FRACNEVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65017 # 2bk9A.248.61 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 248 :LNEAGNIYT 2bk9A 62 :AGRIIRVFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=65018 # 1o7qA.248.215 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 248 :LNEAGNIYT 1o7qA 295 :TQECFKGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65019 # 1qlwA.248.265 read from T0547.t04.many.frag # found chain 1qlwA in training set T0547 248 :LNEAGNIYT 1qlwA 266 :LKACHAFID Number of specific fragments extracted= 1 number of extra gaps= 0 total=65020 # 2etsA.248.106 read from T0547.t04.many.frag # found chain 2etsA in template set T0547 248 :LNEAGNIYT 2etsA 95 :LKSVQYDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65021 # 1o5hA.248.88 read from T0547.t04.many.frag # found chain 1o5hA in template set T0547 248 :LNEAGNIYT 1o5hA 77 :AKKDMEAFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65022 # 1ei6A.248.217 read from T0547.t04.many.frag # found chain 1ei6A in template set T0547 248 :LNEAGNIYT 1ei6A 219 :YAMMDSYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65023 # 2cbiA.248.243 read from T0547.t04.many.frag # found chain 2cbiA in template set T0547 248 :LNEAGNIYT 2cbiA 274 :FNHLITKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65024 # 1nigA.248.26 read from T0547.t04.many.frag # found chain 1nigA in template set T0547 248 :LNEAGNIYT 1nigA 27 :IEAAEAYLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65025 # 1yb0A.248.104 read from T0547.t04.many.frag # found chain 1yb0A in template set T0547 248 :LNEAGNIYT 1yb0A 105 :ENNAVDVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=65026 # 1ie9A.248.187 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 248 :LNEAGNIYT 1ie9A 356 :QDRLSNTLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65027 # 1ay7B.248.66 read from T0547.t04.many.frag # found chain 1ay7B in training set Warning: unaligning (T0547)A251 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1ay7B)L71 Warning: unaligning (T0547)G252 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ay7B)L71 T0547 248 :LNE 1ay7B 67 :AES T0547 253 :NIYT 1ay7B 72 :QVFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=65029 # 1hf8A.248.167 read from T0547.t04.many.frag # found chain 1hf8A in template set T0547 248 :LNEAGNIYT 1hf8A 168 :VPIIQNQMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=65030 # 2a40B.248.143 read from T0547.t04.many.frag # found chain 2a40B in training set T0547 248 :LNEAGNIYT 2a40B 144 :INSLYDVYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65031 # 1r0dA.248.141 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 248 :LNEAGNIYT 1r0dA 907 :SHEIAASTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65032 # 1e19A.248.29 read from T0547.t04.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)I254 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1e19A)I37 Warning: unaligning (T0547)Y255 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1e19A)I37 T0547 248 :LNEAGN 1e19A 30 :VRKTAR T0547 256 :T 1e19A 38 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=65034 # 1xlyA.248.53 read from T0547.t04.many.frag # found chain 1xlyA in template set T0547 248 :LNEAGNIYT 1xlyA 59 :VKKLRFYND Number of specific fragments extracted= 1 number of extra gaps= 0 total=65035 # 256bA.248.29 read from T0547.t04.many.frag # found chain 256bA in training set T0547 248 :LNEAGNIYT 256bA 30 :LTKMRAAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65036 # 1r5yA.248.171 read from T0547.t04.many.frag # found chain 1r5yA in training set T0547 248 :LNEAGNIYT 1r5yA 172 :MERSMRWAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65037 # 1xmxA.248.187 read from T0547.t04.many.frag # found chain 1xmxA in template set T0547 248 :LNEAGNIYT 1xmxA 186 :LATLNYLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65038 # 1kr7A.248.45 read from T0547.t04.many.frag # found chain 1kr7A in training set T0547 248 :LNEAGNIYT 1kr7A 45 :AGKTVDYIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=65039 # 1muwA.248.114 read from T0547.t04.many.frag # found chain 1muwA in training set T0547 248 :LNEAGNIYT 1muwA 115 :LRKTIRNID Number of specific fragments extracted= 1 number of extra gaps= 0 total=65040 # 1zy9A.248.317 read from T0547.t04.many.frag # found chain 1zy9A in template set T0547 248 :LNEAGNIYT 1zy9A 306 :LNWLFDLFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65041 # 1n5uA.248.234 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 248 :LNEAGNIYT 1n5uA 235 :VTDLTKVHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65042 # 1m5wA.248.171 read from T0547.t04.many.frag # found chain 1m5wA in template set T0547 248 :LNEAGNIYT 1m5wA 172 :LARIAKAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65043 # 1wmwA.248.134 read from T0547.t04.many.frag # found chain 1wmwA in training set T0547 248 :LNEAGNIYT 1wmwA 135 :FHEVVRRTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65044 # 1x91A.248.104 read from T0547.t04.many.frag # found chain 1x91A in training set T0547 248 :LNEAGNIYT 1x91A 101 :VSAALDGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=65045 # 1dj7A.248.39 read from T0547.t04.many.frag # found chain 1dj7A in template set T0547 248 :LNEAGNIYT 1dj7A 40 :IEGLARHKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65046 # 1rz2A.248.45 read from T0547.t04.many.frag # found chain 1rz2A in training set T0547 248 :LNEAGNIYT 1rz2A 46 :MAEAQNIYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65047 # 1t1jA.249.29 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 249 :NEAGNIYTE 1t1jA 23 :RACNEVAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65048 # 7odcA.249.212 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 249 :NEAGNIYTE 7odcA 213 :SDARCVFDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=65049 # 2bk9A.249.62 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 249 :NEAGNIYTE 2bk9A 63 :GRIIRVFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65050 # 1qlwA.249.266 read from T0547.t04.many.frag # found chain 1qlwA in training set T0547 249 :NEAGNIYTE 1qlwA 267 :KACHAFIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65051 # 1o7qA.249.216 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 249 :NEAGNIYTE 1o7qA 296 :QECFKGILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65052 # 1o5hA.249.89 read from T0547.t04.many.frag # found chain 1o5hA in template set T0547 249 :NEAGNIYTE 1o5hA 78 :KKDMEAFEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65053 # 2a40B.249.144 read from T0547.t04.many.frag # found chain 2a40B in training set T0547 249 :NEAGNIYTE 2a40B 145 :NSLYDVYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=65054 # 2cbiA.249.244 read from T0547.t04.many.frag # found chain 2cbiA in template set T0547 249 :NEAGNIYTE 2cbiA 275 :NHLITKAES Number of specific fragments extracted= 1 number of extra gaps= 0 total=65055 # 1ay7B.249.67 read from T0547.t04.many.frag # found chain 1ay7B in training set Warning: unaligning (T0547)A251 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1ay7B)L71 Warning: unaligning (T0547)G252 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ay7B)L71 T0547 249 :NE 1ay7B 68 :ES T0547 253 :NIYTE 1ay7B 72 :QVFRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=65057 # 1nigA.249.27 read from T0547.t04.many.frag # found chain 1nigA in template set T0547 249 :NEAGNIYTE 1nigA 28 :EAAEAYLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65058 # 1ei6A.249.218 read from T0547.t04.many.frag # found chain 1ei6A in template set T0547 249 :NEAGNIYTE 1ei6A 220 :AMMDSYFKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=65059 # 1hf8A.249.168 read from T0547.t04.many.frag # found chain 1hf8A in template set T0547 249 :NEAGNIYTE 1hf8A 169 :PIIQNQMDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65060 # 1zy9A.249.318 read from T0547.t04.many.frag # found chain 1zy9A in template set T0547 249 :NEAGNIYTE 1zy9A 307 :NWLFDLFSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65061 # 2etsA.249.107 read from T0547.t04.many.frag # found chain 2etsA in template set T0547 249 :NEAGNIYTE 2etsA 96 :KSVQYDLQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=65062 # 1yb0A.249.105 read from T0547.t04.many.frag # found chain 1yb0A in template set T0547 249 :NEAGNIYTE 1yb0A 106 :NNAVDVVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65063 # 1r5yA.249.172 read from T0547.t04.many.frag # found chain 1r5yA in training set T0547 249 :NEAGNIYTE 1r5yA 173 :ERSMRWAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=65064 # 1e19A.249.30 read from T0547.t04.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)I254 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1e19A)I37 Warning: unaligning (T0547)Y255 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1e19A)I37 T0547 249 :NEAGN 1e19A 31 :RKTAR T0547 256 :TE 1e19A 38 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=65066 # 1ie9A.249.188 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 249 :NEAGNIYTE 1ie9A 357 :DRLSNTLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65067 # 1xlyA.249.54 read from T0547.t04.many.frag # found chain 1xlyA in template set T0547 249 :NEAGNIYTE 1xlyA 60 :KKLRFYNDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65068 # 1aisB.249.126 read from T0547.t04.many.frag # found chain 1aisB in template set T0547 249 :NEAGNIYTE 1aisB 1227 :RRAIEILDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65069 # 1m5wA.249.172 read from T0547.t04.many.frag # found chain 1m5wA in template set T0547 249 :NEAGNIYTE 1m5wA 173 :ARIAKAATF Number of specific fragments extracted= 1 number of extra gaps= 0 total=65070 # 1r0dA.249.142 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 249 :NEAGNIYTE 1r0dA 908 :HEIAASTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65071 # 1xmxA.249.188 read from T0547.t04.many.frag # found chain 1xmxA in template set T0547 249 :NEAGNIYTE 1xmxA 187 :ATLNYLATT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65072 # 1d8wA.249.169 read from T0547.t04.many.frag # found chain 1d8wA in training set T0547 249 :NEAGNIYTE 1d8wA 171 :KASRRVSAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65073 # 1ki9A.249.152 read from T0547.t04.many.frag # found chain 1ki9A in template set T0547 249 :NEAGNIYTE 1ki9A 153 :IMNRAAAMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65074 # 1n5uA.249.235 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 249 :NEAGNIYTE 1n5uA 236 :TDLTKVHTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65075 # 1yw0A.249.66 read from T0547.t04.many.frag # found chain 1yw0A in template set T0547 249 :NEAGNIYTE 1yw0A 89 :ARSKQVLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65076 # 1qxyA.249.16 read from T0547.t04.many.frag # found chain 1qxyA in training set T0547 249 :NEAGNIYTE 1qxyA 17 :YICAKVRNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65077 # 1wmwA.249.135 read from T0547.t04.many.frag # found chain 1wmwA in training set T0547 249 :NEAGNIYTE 1wmwA 136 :HEVVRRTAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65078 # 1g73A.249.106 read from T0547.t04.many.frag # found chain 1g73A in template set T0547 249 :NEAGNIYTE 1g73A 107 :GLSEMAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65079 # 1t1jA.250.30 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 250 :EAGNIYTEL 1t1jA 24 :ACNEVAATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65080 # 7odcA.250.213 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 250 :EAGNIYTEL 7odcA 214 :DARCVFDMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65081 # 2bk9A.250.63 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 250 :EAGNIYTEL 2bk9A 64 :RIIRVFDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=65082 # 1o7qA.250.217 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 250 :EAGNIYTEL 1o7qA 297 :ECFKGILKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=65083 # 1qlwA.250.267 read from T0547.t04.many.frag # found chain 1qlwA in training set T0547 250 :EAGNIYTEL 1qlwA 268 :ACHAFIDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65084 # 2cbiA.250.245 read from T0547.t04.many.frag # found chain 2cbiA in template set T0547 250 :EAGNIYTEL 2cbiA 276 :HLITKAESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65085 # 1ei6A.250.219 read from T0547.t04.many.frag # found chain 1ei6A in template set T0547 250 :EAGNIYTEL 1ei6A 221 :MMDSYFKRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65086 # 1nigA.250.28 read from T0547.t04.many.frag # found chain 1nigA in template set T0547 250 :EAGNIYTEL 1nigA 29 :AAEAYLGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65087 # 1o5hA.250.90 read from T0547.t04.many.frag # found chain 1o5hA in template set T0547 250 :EAGNIYTEL 1o5hA 79 :KDMEAFEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65088 # 1ay7B.250.68 read from T0547.t04.many.frag # found chain 1ay7B in training set Warning: unaligning (T0547)A251 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1ay7B)L71 Warning: unaligning (T0547)G252 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ay7B)L71 T0547 250 :E 1ay7B 69 :S T0547 253 :NIYTEL 1ay7B 72 :QVFREA Number of specific fragments extracted= 2 number of extra gaps= 1 total=65090 # 2etsA.250.108 read from T0547.t04.many.frag # found chain 2etsA in template set T0547 250 :EAGNIYTEL 2etsA 97 :SVQYDLQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65091 # 2a40B.250.145 read from T0547.t04.many.frag # found chain 2a40B in training set T0547 250 :EAGNIYTEL 2a40B 146 :SLYDVYLDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65092 # 1aisB.250.127 read from T0547.t04.many.frag # found chain 1aisB in template set T0547 250 :EAGNIYTEL 1aisB 1228 :RAIEILDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65093 # 1xmxA.250.189 read from T0547.t04.many.frag # found chain 1xmxA in template set T0547 250 :EAGNIYTEL 1xmxA 188 :TLNYLATTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=65094 # 1m5wA.250.173 read from T0547.t04.many.frag # found chain 1m5wA in template set T0547 250 :EAGNIYTEL 1m5wA 174 :RIAKAATFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65095 # 1zy9A.250.319 read from T0547.t04.many.frag # found chain 1zy9A in template set T0547 250 :EAGNIYTEL 1zy9A 308 :WLFDLFSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65096 # 1yb0A.250.106 read from T0547.t04.many.frag # found chain 1yb0A in template set T0547 250 :EAGNIYTEL 1yb0A 107 :NAVDVVRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65097 # 1e19A.250.31 read from T0547.t04.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)I254 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1e19A)I37 Warning: unaligning (T0547)Y255 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1e19A)I37 T0547 250 :EAGN 1e19A 32 :KTAR T0547 256 :TEL 1e19A 38 :AEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=65099 # 1hf8A.250.169 read from T0547.t04.many.frag # found chain 1hf8A in template set T0547 250 :EAGNIYTEL 1hf8A 170 :IIQNQMDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65100 # 1muwA.250.116 read from T0547.t04.many.frag # found chain 1muwA in training set T0547 250 :EAGNIYTEL 1muwA 117 :KTIRNIDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65101 # 1r5yA.250.173 read from T0547.t04.many.frag # found chain 1r5yA in training set T0547 250 :EAGNIYTEL 1r5yA 174 :RSMRWAKRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65102 # 1ie9A.250.189 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 250 :EAGNIYTEL 1ie9A 358 :RLSNTLQTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65103 # 1ki9A.250.153 read from T0547.t04.many.frag # found chain 1ki9A in template set T0547 250 :EAGNIYTEL 1ki9A 154 :MNRAAAMTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65104 # 1r0dA.250.143 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 250 :EAGNIYTEL 1r0dA 909 :EIAASTAQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65105 # 1x91A.250.106 read from T0547.t04.many.frag # found chain 1x91A in training set T0547 250 :EAGNIYTEL 1x91A 103 :AALDGADTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=65106 # 1wmwA.250.136 read from T0547.t04.many.frag # found chain 1wmwA in training set T0547 250 :EAGNIYTEL 1wmwA 137 :EVVRRTAYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65107 # 1t6uA.250.49 read from T0547.t04.many.frag # found chain 1t6uA in training set T0547 250 :EAGNIYTEL 1t6uA 50 :LAKHHVSVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65108 # 1ga6A.250.148 read from T0547.t04.many.frag # found chain 1ga6A in training set T0547 250 :EAGNIYTEL 1ga6A 149 :AEDRIFATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65109 # 1g73A.250.107 read from T0547.t04.many.frag # found chain 1g73A in template set T0547 250 :EAGNIYTEL 1g73A 108 :LSEMAAEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65110 # 1otsA.250.271 read from T0547.t04.many.frag # found chain 1otsA in template set T0547 250 :EAGNIYTEL 1otsA 272 :WVLGMQDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65111 # 7odcA.251.214 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 251 :AGNIYTELR 7odcA 215 :ARCVFDMAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65112 # 1qlwA.251.268 read from T0547.t04.many.frag # found chain 1qlwA in training set T0547 251 :AGNIYTELR 1qlwA 269 :CHAFIDALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=65113 # 1t1jA.251.31 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 251 :AGNIYTELR 1t1jA 25 :CNEVAATIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65114 # 2cbiA.251.246 read from T0547.t04.many.frag # found chain 2cbiA in template set T0547 251 :AGNIYTELR 2cbiA 277 :LITKAESLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65115 # 1ay7B.251.69 read from T0547.t04.many.frag # found chain 1ay7B in training set Warning: unaligning (T0547)A251 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1ay7B)L71 Warning: unaligning (T0547)G252 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ay7B)L71 T0547 253 :NIYTELR 1ay7B 72 :QVFREAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=65116 # 2bk9A.251.64 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 251 :AGNIYTELR 2bk9A 65 :IIRVFDESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65117 # 1nigA.251.29 read from T0547.t04.many.frag # found chain 1nigA in template set T0547 251 :AGNIYTELR 1nigA 30 :AEAYLGLAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65118 # 1o7qA.251.218 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 251 :AGNIYTELR 1o7qA 298 :CFKGILKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65119 # 2a40B.251.146 read from T0547.t04.many.frag # found chain 2a40B in training set T0547 251 :AGNIYTELR 2a40B 147 :LYDVYLDVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65120 # 1aisB.251.128 read from T0547.t04.many.frag # found chain 1aisB in template set T0547 251 :AGNIYTELR 1aisB 1229 :AIEILDEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65121 # 1ei6A.251.220 read from T0547.t04.many.frag # found chain 1ei6A in template set T0547 251 :AGNIYTELR 1ei6A 222 :MDSYFKRYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=65122 # 1zy9A.251.320 read from T0547.t04.many.frag # found chain 1zy9A in template set T0547 251 :AGNIYTELR 1zy9A 309 :LFDLFSSLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=65123 # 2etsA.251.109 read from T0547.t04.many.frag # found chain 2etsA in template set T0547 251 :AGNIYTELR 2etsA 98 :VQYDLQNIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65124 # 1yb0A.251.107 read from T0547.t04.many.frag # found chain 1yb0A in template set T0547 251 :AGNIYTELR 1yb0A 108 :AVDVVRQLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=65125 # 1m5wA.251.174 read from T0547.t04.many.frag # found chain 1m5wA in template set T0547 251 :AGNIYTELR 1m5wA 175 :IAKAATFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65126 # 1o5hA.251.91 read from T0547.t04.many.frag # found chain 1o5hA in template set T0547 251 :AGNIYTELR 1o5hA 80 :DMEAFEKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=65127 # 1ga6A.251.149 read from T0547.t04.many.frag # found chain 1ga6A in training set T0547 251 :AGNIYTELR 1ga6A 150 :EDRIFATAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65128 # 1g73A.251.108 read from T0547.t04.many.frag # found chain 1g73A in template set T0547 251 :AGNIYTELR 1g73A 109 :SEMAAEAAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65129 # 1muwA.251.117 read from T0547.t04.many.frag # found chain 1muwA in training set T0547 251 :AGNIYTELR 1muwA 118 :TIRNIDLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65130 # 1r5yA.251.174 read from T0547.t04.many.frag # found chain 1r5yA in training set T0547 251 :AGNIYTELR 1r5yA 175 :SMRWAKRSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=65131 # 1xmxA.251.190 read from T0547.t04.many.frag # found chain 1xmxA in template set T0547 251 :AGNIYTELR 1xmxA 189 :LNYLATTCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=65132 # 1ki9A.251.154 read from T0547.t04.many.frag # found chain 1ki9A in template set T0547 251 :AGNIYTELR 1ki9A 155 :NRAAAMTYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65133 # 1otsA.251.272 read from T0547.t04.many.frag # found chain 1otsA in template set T0547 251 :AGNIYTELR 1otsA 273 :VLGMQDLLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=65134 # 1x91A.251.107 read from T0547.t04.many.frag # found chain 1x91A in training set T0547 251 :AGNIYTELR 1x91A 104 :ALDGADTCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65135 # 1ie9A.251.190 read from T0547.t04.many.frag # found chain 1ie9A in training set T0547 251 :AGNIYTELR 1ie9A 359 :LSNTLQTYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65136 # 1v6sA.251.37 read from T0547.t04.many.frag # found chain 1v6sA in training set T0547 251 :AGNIYTELR 1v6sA 38 :SLPTLRHLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65137 # 1hf8A.251.170 read from T0547.t04.many.frag # found chain 1hf8A in template set T0547 251 :AGNIYTELR 1hf8A 171 :IQNQMDALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65138 # 1evlA.251.158 read from T0547.t04.many.frag # found chain 1evlA in training set T0547 251 :AGNIYTELR 1evlA 400 :CIRLVYDMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65139 # 1ntyA.251.148 read from T0547.t04.many.frag # found chain 1ntyA in training set T0547 251 :AGNIYTELR 1ntyA 1373 :YQLLLKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65140 # 1wmwA.251.137 read from T0547.t04.many.frag # found chain 1wmwA in training set T0547 251 :AGNIYTELR 1wmwA 138 :VVRRTAYGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65141 # 1t1jA.252.32 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 252 :GNIYTELRK 1t1jA 26 :NEVAATIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=65142 # 7odcA.252.215 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 252 :GNIYTELRK 7odcA 216 :RCVFDMATE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65143 # 2cbiA.252.247 read from T0547.t04.many.frag # found chain 2cbiA in template set T0547 252 :GNIYTELRK 2cbiA 278 :ITKAESLYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=65144 # 1qlwA.252.269 read from T0547.t04.many.frag # found chain 1qlwA in training set T0547 252 :GNIYTELRK 1qlwA 270 :HAFIDALNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65145 # 1ei6A.252.221 read from T0547.t04.many.frag # found chain 1ei6A in template set T0547 252 :GNIYTELRK 1ei6A 223 :DSYFKRYHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65146 # 2bk9A.252.65 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 252 :GNIYTELRK 2bk9A 66 :IRVFDESIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65147 # 1ay7B.252.70 read from T0547.t04.many.frag # found chain 1ay7B in training set Warning: unaligning (T0547)G252 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ay7B)L71 T0547 253 :NIYTELRK 1ay7B 72 :QVFREAKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=65148 # 1o7qA.252.219 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 252 :GNIYTELRK 1o7qA 299 :FKGILKDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65149 # 1nigA.252.30 read from T0547.t04.many.frag # found chain 1nigA in template set T0547 252 :GNIYTELRK 1nigA 31 :EAYLGLAIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65150 # 1zy9A.252.321 read from T0547.t04.many.frag # found chain 1zy9A in template set T0547 252 :GNIYTELRK 1zy9A 310 :FDLFSSLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65151 # 1aisB.252.129 read from T0547.t04.many.frag # found chain 1aisB in template set T0547 252 :GNIYTELRK 1aisB 1230 :IEILDEAYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65152 # 2etsA.252.110 read from T0547.t04.many.frag # found chain 2etsA in template set T0547 252 :GNIYTELRK 2etsA 99 :QYDLQNILD Number of specific fragments extracted= 1 number of extra gaps= 0 total=65153 # 1m5wA.252.175 read from T0547.t04.many.frag # found chain 1m5wA in template set T0547 252 :GNIYTELRK 1m5wA 176 :AKAATFAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65154 # 1ki9A.252.155 read from T0547.t04.many.frag # found chain 1ki9A in template set T0547 252 :GNIYTELRK 1ki9A 156 :RAAAMTYGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65155 # 1ga6A.252.150 read from T0547.t04.many.frag # found chain 1ga6A in training set T0547 252 :GNIYTELRK 1ga6A 151 :DRIFATAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65156 # 1nekA.252.92 read from T0547.t04.many.frag # found chain 1nekA in template set T0547 252 :GNIYTELRK 1nekA 93 :PEAILELEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=65157 # 2a40B.252.147 read from T0547.t04.many.frag # found chain 2a40B in training set T0547 252 :GNIYTELRK 2a40B 148 :YDVYLDVQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65158 # 1r0dA.252.145 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 252 :GNIYTELRK 1r0dA 911 :AASTAQLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65159 # 1yb0A.252.108 read from T0547.t04.many.frag # found chain 1yb0A in template set T0547 252 :GNIYTELRK 1yb0A 109 :VDVVRQLMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65160 # 1e19A.252.33 read from T0547.t04.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)I254 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1e19A)I37 Warning: unaligning (T0547)Y255 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1e19A)I37 T0547 252 :GN 1e19A 34 :AR T0547 256 :TELRK 1e19A 38 :AEIIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=65162 # 1q7zA.252.342 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 252 :GNIYTELRK 1q7zA 343 :IKEAKTQVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65163 # 1x91A.252.108 read from T0547.t04.many.frag # found chain 1x91A in training set T0547 252 :GNIYTELRK 1x91A 105 :LDGADTCLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=65164 # 1ntyA.252.149 read from T0547.t04.many.frag # found chain 1ntyA in training set T0547 252 :GNIYTELRK 1ntyA 1374 :QLLLKELLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65165 1t0qB expands to /projects/compbio/data/pdb/1t0q.pdb.gz 1t0qB:# 1t0qB.252.292 read from T0547.t04.many.frag # adding 1t0qB to template set # found chain 1t0qB in template set T0547 252 :GNIYTELRK 1t0qB 293 :EPLADKAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65166 # 1upkA.252.43 read from T0547.t04.many.frag # found chain 1upkA in template set T0547 252 :GNIYTELRK 1upkA 44 :SKNLVAMKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65167 # 1o5hA.252.92 read from T0547.t04.many.frag # found chain 1o5hA in template set T0547 252 :GNIYTELRK 1o5hA 81 :MEAFEKVMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65168 # 1esc.252.227 read from T0547.t04.many.frag # found chain 1esc in template set T0547 252 :GNIYTELRK 1esc 228 :NDAMKKAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65169 # 1m4tA.252.182 read from T0547.t04.many.frag # found chain 1m4tA in template set T0547 252 :GNIYTELRK 1m4tA 183 :QNKAEAAQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65170 # 1nnwA.252.20 read from T0547.t04.many.frag # found chain 1nnwA in template set T0547 252 :GNIYTELRK 1nnwA 21 :LSRIEEMRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65171 # 1yw0A.252.69 read from T0547.t04.many.frag # found chain 1yw0A in template set T0547 252 :GNIYTELRK 1yw0A 92 :KQVLRQLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65172 # 1qlwA.253.270 read from T0547.t04.many.frag # found chain 1qlwA in training set T0547 253 :NIYTELRKM 1qlwA 271 :AFIDALNAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65173 # 1t1jA.253.33 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 253 :NIYTELRKM 1t1jA 27 :EVAATIVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65174 # 7odcA.253.216 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 253 :NIYTELRKM 7odcA 217 :CVFDMATEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65175 # 2cbiA.253.248 read from T0547.t04.many.frag # found chain 2cbiA in template set T0547 253 :NIYTELRKM 2cbiA 279 :TKAESLYDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=65176 # 1ei6A.253.222 read from T0547.t04.many.frag # found chain 1ei6A in template set T0547 253 :NIYTELRKM 1ei6A 224 :SYFKRYHEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65177 # 1zy9A.253.322 read from T0547.t04.many.frag # found chain 1zy9A in template set T0547 253 :NIYTELRKM 1zy9A 311 :DLFSSLRKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=65178 # 1ay7B.253.71 read from T0547.t04.many.frag # found chain 1ay7B in training set T0547 253 :NIYTELRKM 1ay7B 72 :QVFREAKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65179 # 1aisB.253.130 read from T0547.t04.many.frag # found chain 1aisB in template set T0547 253 :NIYTELRKM 1aisB 1231 :EILDEAYKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=65180 # 1m5wA.253.176 read from T0547.t04.many.frag # found chain 1m5wA in template set T0547 253 :NIYTELRKM 1m5wA 177 :KAATFAASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65181 # 2bk9A.253.66 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 253 :NIYTELRKM 2bk9A 67 :RVFDESIQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65182 # 2etsA.253.111 read from T0547.t04.many.frag # found chain 2etsA in template set T0547 253 :NIYTELRKM 2etsA 100 :YDLQNILDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65183 # 1nekA.253.93 read from T0547.t04.many.frag # found chain 1nekA in template set T0547 253 :NIYTELRKM 1nekA 94 :EAILELEHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=65184 # 1o7qA.253.220 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 253 :NIYTELRKM 1o7qA 300 :KGILKDKKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=65185 # 1ga6A.253.151 read from T0547.t04.many.frag # found chain 1ga6A in training set T0547 253 :NIYTELRKM 1ga6A 152 :RIFATAAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65186 # 1nigA.253.31 read from T0547.t04.many.frag # found chain 1nigA in template set T0547 253 :NIYTELRKM 1nigA 32 :AYLGLAISE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65187 # 1ki9A.253.156 read from T0547.t04.many.frag # found chain 1ki9A in template set T0547 253 :NIYTELRKM 1ki9A 157 :AAAMTYGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65188 # 1muwA.253.119 read from T0547.t04.many.frag # found chain 1muwA in training set T0547 253 :NIYTELRKM 1muwA 120 :RNIDLAVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65189 # 1i0dA.253.248 read from T0547.t04.many.frag # found chain 1i0dA in template set T0547 253 :NIYTELRKM 1i0dA 282 :LLIKALIDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65190 # 1orjA.253.60 read from T0547.t04.many.frag # found chain 1orjA in template set Warning: unaligning (T0547)R259 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)S1068 Warning: unaligning (T0547)K260 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)S1068 T0547 253 :NIYTEL 1orjA 1061 :DIISAL T0547 261 :M 1orjA 1069 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=65192 # 1r0dA.253.146 read from T0547.t04.many.frag # found chain 1r0dA in template set T0547 253 :NIYTELRKM 1r0dA 912 :ASTAQLVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65193 # 1lfpA.253.181 read from T0547.t04.many.frag # found chain 1lfpA in training set T0547 253 :NIYTELRKM 1lfpA 182 :EVKENLEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65194 # 1upkA.253.44 read from T0547.t04.many.frag # found chain 1upkA in template set T0547 253 :NIYTELRKM 1upkA 45 :KNLVAMKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65195 # 1hd2A.253.56 read from T0547.t04.many.frag # found chain 1hd2A in training set T0547 253 :NIYTELRKM 1hd2A 57 :EQAEALKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65196 # 1g73A.253.110 read from T0547.t04.many.frag # found chain 1g73A in template set T0547 253 :NIYTELRKM 1g73A 111 :MAAEAAYQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65197 # 1yb0A.253.109 read from T0547.t04.many.frag # found chain 1yb0A in template set T0547 253 :NIYTELRKM 1yb0A 110 :DVVRQLMSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=65198 # 1q7zA.253.343 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 253 :NIYTELRKM 1q7zA 344 :KEAKTQVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65199 # 1v6sA.253.39 read from T0547.t04.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)M261 (1v6sA)G48 because G (3-10) conformation "forbidden" or filtered. T0547 253 :NIYTELRK 1v6sA 40 :PTLRHLLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=65200 # 1jeyA.253.187 read from T0547.t04.many.frag # found chain 1jeyA in template set Warning: unaligning (T0547)M261 (1jeyA)T196 because G (3-10) conformation "forbidden" or filtered. T0547 253 :NIYTELRK 1jeyA 188 :TKAGDLRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=65201 # 1fobA.253.115 read from T0547.t04.many.frag # found chain 1fobA in training set T0547 253 :NIYTELRKM 1fobA 116 :EVCNTFAEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=65202 # 1xd7A.253.41 read from T0547.t04.many.frag # found chain 1xd7A in template set T0547 253 :NIYTELRKM 1xd7A 42 :RMISLLKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65203 # 1zy9A.254.323 read from T0547.t04.many.frag # found chain 1zy9A in template set T0547 254 :IYTELRKMG 1zy9A 312 :LFSSLRKMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65204 # 1t1jA.254.34 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 254 :IYTELRKMG 1t1jA 28 :VAATIVRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65205 # 1ei6A.254.223 read from T0547.t04.many.frag # found chain 1ei6A in template set T0547 254 :IYTELRKMG 1ei6A 225 :YFKRYHEQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65206 # 1qlwA.254.271 read from T0547.t04.many.frag # found chain 1qlwA in training set T0547 254 :IYTELRKMG 1qlwA 272 :FIDALNAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65207 # 2cbiA.254.249 read from T0547.t04.many.frag # found chain 2cbiA in template set T0547 254 :IYTELRKMG 2cbiA 280 :KAESLYDMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65208 # 1nekA.254.94 read from T0547.t04.many.frag # found chain 1nekA in template set T0547 254 :IYTELRKMG 1nekA 95 :AILELEHMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65209 # 1ay7B.254.72 read from T0547.t04.many.frag # found chain 1ay7B in training set T0547 254 :IYTELRKMG 1ay7B 73 :VFREAKAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65210 # 7odcA.254.217 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 254 :IYTELRKMG 7odcA 218 :VFDMATEVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65211 # 1aisB.254.131 read from T0547.t04.many.frag # found chain 1aisB in template set T0547 254 :IYTELRKMG 1aisB 1232 :ILDEAYKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65212 # 2bk9A.254.67 read from T0547.t04.many.frag # found chain 2bk9A in training set T0547 254 :IYTELRKMG 2bk9A 68 :VFDESIQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65213 # 1m5wA.254.177 read from T0547.t04.many.frag # found chain 1m5wA in template set T0547 254 :IYTELRKMG 1m5wA 178 :AATFAASLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65214 # 1ga6A.254.152 read from T0547.t04.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)M261 (1ga6A)Q160 because G (3-10) conformation "forbidden" or filtered. T0547 254 :IYTELRK 1ga6A 153 :IFATAAA T0547 262 :G 1ga6A 161 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=65216 # 1hd2A.254.57 read from T0547.t04.many.frag # found chain 1hd2A in training set T0547 254 :IYTELRKMG 1hd2A 58 :QAEALKAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65217 # 1o7qA.254.221 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 254 :IYTELRKMG 1o7qA 301 :GILKDKKND Number of specific fragments extracted= 1 number of extra gaps= 0 total=65218 # 2etsA.254.112 read from T0547.t04.many.frag # found chain 2etsA in template set T0547 254 :IYTELRKMG 2etsA 101 :DLQNILDGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65219 # 1i0dA.254.249 read from T0547.t04.many.frag # found chain 1i0dA in template set T0547 254 :IYTELRKMG 1i0dA 283 :LIKALIDQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65220 # 1e19A.254.35 read from T0547.t04.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)I254 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1e19A)I37 Warning: unaligning (T0547)Y255 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1e19A)I37 T0547 256 :TELRKMG 1e19A 38 :AEIIARG Number of specific fragments extracted= 1 number of extra gaps= 1 total=65221 # 1ki9A.254.157 read from T0547.t04.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)G262 (1ki9A)T166 because G (3-10) conformation "forbidden" or filtered. T0547 254 :IYTELRKM 1ki9A 158 :AAMTYGVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=65222 # 1nigA.254.32 read from T0547.t04.many.frag # found chain 1nigA in template set T0547 254 :IYTELRKMG 1nigA 33 :YLGLAISEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65223 # 1q7zA.254.344 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 254 :IYTELRKMG 1q7zA 345 :EAKTQVEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65224 # 1lfpA.254.182 read from T0547.t04.many.frag # found chain 1lfpA in training set T0547 254 :IYTELRKMG 1lfpA 183 :VKENLEKLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65225 # 1esc.254.229 read from T0547.t04.many.frag # found chain 1esc in template set Warning: unaligning (T0547)G262 (1esc)G238 because G (3-10) conformation "forbidden" or filtered. T0547 254 :IYTELRKM 1esc 230 :AMKKAAAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=65226 # 1fobA.254.116 read from T0547.t04.many.frag # found chain 1fobA in training set T0547 254 :IYTELRKMG 1fobA 117 :VCNTFAEND Number of specific fragments extracted= 1 number of extra gaps= 0 total=65227 # 1muwA.254.120 read from T0547.t04.many.frag # found chain 1muwA in training set T0547 254 :IYTELRKMG 1muwA 121 :NIDLAVELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65228 # 1zzmA.254.164 read from T0547.t04.many.frag # found chain 1zzmA in training set T0547 254 :IYTELRKMG 1zzmA 165 :QAERFVQLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65229 # 1musA.254.33 read from T0547.t04.many.frag # found chain 1musA in template set T0547 254 :IYTELRKMG 1musA 34 :VAAQLAKYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65230 # 1nnwA.254.22 read from T0547.t04.many.frag # found chain 1nnwA in template set Warning: unaligning (T0547)M261 (1nnwA)E30 because G (3-10) conformation "forbidden" or filtered. T0547 254 :IYTELRK 1nnwA 23 :RIEEMRE T0547 262 :G 1nnwA 31 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=65232 # 1xd7A.254.42 read from T0547.t04.many.frag # found chain 1xd7A in template set T0547 254 :IYTELRKMG 1xd7A 43 :MISLLKKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=65233 # 1qkrA.254.50 read from T0547.t04.many.frag # found chain 1qkrA in training set T0547 254 :IYTELRKMG 1qkrA 929 :LMAEMSRLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65234 # 1xmxA.254.193 read from T0547.t04.many.frag # found chain 1xmxA in template set T0547 254 :IYTELRKMG 1xmxA 192 :LATTCRKEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65235 # 1qlwA.255.272 read from T0547.t04.many.frag # found chain 1qlwA in training set T0547 255 :YTELRKMGA 1qlwA 273 :IDALNAAGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65236 # 1t1jA.255.35 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 255 :YTELRKMGA 1t1jA 29 :AATIVRAGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=65237 # 1ei6A.255.224 read from T0547.t04.many.frag # found chain 1ei6A in template set T0547 255 :YTELRKMGA 1ei6A 226 :FKRYHEQGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65238 # 1zy9A.255.324 read from T0547.t04.many.frag # found chain 1zy9A in template set T0547 255 :YTELRKMGA 1zy9A 313 :FSSLRKMGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65239 # 7odcA.255.218 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 255 :YTELRKMGA 7odcA 219 :FDMATEVGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=65240 # 1ay7B.255.73 read from T0547.t04.many.frag # found chain 1ay7B in training set T0547 255 :YTELRKMGA 1ay7B 74 :FREAKAEGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=65241 # 1hd2A.255.58 read from T0547.t04.many.frag # found chain 1hd2A in training set T0547 255 :YTELRKMGA 1hd2A 59 :AEALKAKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65242 # 1m5wA.255.178 read from T0547.t04.many.frag # found chain 1m5wA in template set T0547 255 :YTELRKMGA 1m5wA 179 :ATFAASLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65243 # 2cbiA.255.250 read from T0547.t04.many.frag # found chain 2cbiA in template set Warning: unaligning (T0547)A263 (2cbiA)V289 because P (beta_P) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 2cbiA 281 :AESLYDMG Number of specific fragments extracted= 1 number of extra gaps= 1 total=65244 # 1lfpA.255.183 read from T0547.t04.many.frag # found chain 1lfpA in training set Warning: unaligning (T0547)M261 (1lfpA)L190 because G (3-10) conformation "forbidden" or filtered. T0547 255 :YTELRK 1lfpA 184 :KENLEK T0547 262 :GA 1lfpA 191 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65246 # 1aisB.255.132 read from T0547.t04.many.frag # found chain 1aisB in template set T0547 255 :YTELRKMGA 1aisB 1233 :LDEAYKRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65247 # 1nekA.255.95 read from T0547.t04.many.frag # found chain 1nekA in template set T0547 255 :YTELRKMGA 1nekA 96 :ILELEHMGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65248 # 1zzmA.255.165 read from T0547.t04.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)A263 (1zzmA)Y174 because P (beta_P) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 1zzmA 166 :AERFVQLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=65249 # 1o7qA.255.222 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 255 :YTELRKMGA 1o7qA 302 :ILKDKKNDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65250 # 1i0dA.255.250 read from T0547.t04.many.frag # found chain 1i0dA in template set T0547 255 :YTELRKMGA 1i0dA 284 :IKALIDQGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65251 # 1hf2A.255.62 read from T0547.t04.many.frag # found chain 1hf2A in template set T0547 255 :YTELRKMGA 1hf2A 63 :VSHLRNLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65252 # 1fobA.255.117 read from T0547.t04.many.frag # found chain 1fobA in training set T0547 255 :YTELRKMGA 1fobA 118 :CNTFAENDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65253 # 1ga6A.255.153 read from T0547.t04.many.frag # found chain 1ga6A in training set T0547 255 :YTELRKMGA 1ga6A 154 :FATAAAQGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65254 # 1yt8A.255.464 read from T0547.t04.many.frag # found chain 1yt8A in template set T0547 255 :YTELRKMGA 1yt8A 465 :TSAWVAAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65255 # 1muwA.255.121 read from T0547.t04.many.frag # found chain 1muwA in training set T0547 255 :YTELRKMGA 1muwA 122 :IDLAVELGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65256 # 1rx0A.255.55 read from T0547.t04.many.frag # found chain 1rx0A in training set T0547 255 :YTELRKMGA 1rx0A 56 :MRKAAQLGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=65257 # 1nnwA.255.23 read from T0547.t04.many.frag # found chain 1nnwA in template set Warning: unaligning (T0547)A263 (1nnwA)Y32 because E (beta_S) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 1nnwA 24 :IEEMREEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=65258 # 1xmxA.255.194 read from T0547.t04.many.frag # found chain 1xmxA in template set Warning: unaligning (T0547)A263 (1xmxA)K201 because Y (epsilon') conformation "forbidden" or filtered. T0547 255 :YTELRKMG 1xmxA 193 :ATTCRKEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=65259 # 1lzlA.255.269 read from T0547.t04.many.frag # found chain 1lzlA in training set T0547 255 :YTELRKMGA 1lzlA 270 :ALRLLQAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65260 # 2etsA.255.113 read from T0547.t04.many.frag # found chain 2etsA in template set Warning: unaligning (T0547)G262 (2etsA)V109 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 because last residue in template chain is (2etsA)T110 T0547 255 :YTELRKM 2etsA 102 :LQNILDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=65261 # 1chd.255.168 read from T0547.t04.many.frag # found chain 1chd in training set T0547 255 :YTELRKMGA 1chd 315 :PREAINMGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65262 # 1xd7A.255.43 read from T0547.t04.many.frag # found chain 1xd7A in template set T0547 255 :YTELRKMGA 1xd7A 44 :ISLLKKADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65263 # 2bk9A.255.68 read from T0547.t04.many.frag # found chain 2bk9A in training set Warning: unaligning (T0547)G262 (2bk9A)L76 because P (beta_P) conformation "forbidden" or filtered. T0547 255 :YTELRKM 2bk9A 69 :FDESIQV T0547 263 :A 2bk9A 77 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=65265 # 1g73A.255.112 read from T0547.t04.many.frag # found chain 1g73A in template set T0547 255 :YTELRKMGA 1g73A 113 :AEAAYQTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65266 # 2tpsA.255.162 read from T0547.t04.many.frag # found chain 2tpsA in training set T0547 255 :YTELRKMGA 2tpsA 171 :IEAVRRQGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65267 # 1yt8A.256.465 read from T0547.t04.many.frag # found chain 1yt8A in template set T0547 256 :TELRKMGAK 1yt8A 466 :SAWVAAGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=65268 # 1zzmA.256.166 read from T0547.t04.many.frag # found chain 1zzmA in training set T0547 256 :TELRKMGAK 1zzmA 167 :ERFVQLGYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65269 # 1qlwA.256.273 read from T0547.t04.many.frag # found chain 1qlwA in training set T0547 256 :TELRKMGAK 1qlwA 274 :DALNAAGGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65270 # 1ei6A.256.225 read from T0547.t04.many.frag # found chain 1ei6A in template set Warning: unaligning (T0547)A263 (1ei6A)A234 because P (beta_P) conformation "forbidden" or filtered. T0547 256 :TELRKMG 1ei6A 227 :KRYHEQG T0547 264 :K 1ei6A 235 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=65272 # 1t1jA.256.36 read from T0547.t04.many.frag # found chain 1t1jA in training set T0547 256 :TELRKMGAK 1t1jA 30 :ATIVRAGHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65273 # 1ay7B.256.74 read from T0547.t04.many.frag # found chain 1ay7B in training set T0547 256 :TELRKMGAK 1ay7B 75 :REAKAEGCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=65274 # 1m5wA.256.179 read from T0547.t04.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)M261 (1m5wA)L185 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1m5wA)K188 because P (beta_P) conformation "forbidden" or filtered. T0547 256 :TELRK 1m5wA 180 :TFAAS T0547 262 :GA 1m5wA 186 :GL Number of specific fragments extracted= 2 number of extra gaps= 2 total=65276 # 1i0dA.256.251 read from T0547.t04.many.frag # found chain 1i0dA in template set Warning: unaligning (T0547)M261 (1i0dA)Q290 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1i0dA)Y292 because G (3-10) conformation "forbidden" or filtered. T0547 256 :TELRK 1i0dA 285 :KALID T0547 262 :G 1i0dA 291 :G T0547 264 :K 1i0dA 293 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=65279 # 1nekA.256.96 read from T0547.t04.many.frag # found chain 1nekA in template set T0547 256 :TELRKMGAK 1nekA 97 :LELEHMGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=65280 # 1hd2A.256.59 read from T0547.t04.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)A263 (1hd2A)V67 because P (beta_P) conformation "forbidden" or filtered. T0547 256 :TELRKMG 1hd2A 60 :EALKAKG T0547 264 :K 1hd2A 68 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=65282 # 1nnwA.256.24 read from T0547.t04.many.frag # found chain 1nnwA in template set Warning: unaligning (T0547)A263 (1nnwA)Y32 because E (beta_S) conformation "forbidden" or filtered. T0547 256 :TELRKMG 1nnwA 25 :EEMREEG T0547 264 :K 1nnwA 33 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=65284 # 1aisB.256.133 read from T0547.t04.many.frag # found chain 1aisB in template set T0547 256 :TELRKMGAK 1aisB 1234 :DEAYKRGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65285 # 1hf2A.256.63 read from T0547.t04.many.frag # found chain 1hf2A in template set T0547 256 :TELRKMGAK 1hf2A 64 :SHLRNLGLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65286 # 1r0mA.256.283 read from T0547.t04.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)K264 (1r0mA)P292 because P (beta_P) conformation "forbidden" or filtered. T0547 256 :TELRKMGA 1r0mA 284 :DVAQSFGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=65287 # 1jftA.256.254 read from T0547.t04.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)A263 (1jftA)L263 because P (beta_P) conformation "forbidden" or filtered. T0547 256 :TELRKMG 1jftA 256 :CAADEMG T0547 264 :K 1jftA 264 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=65289 # 1chd.256.169 read from T0547.t04.many.frag # found chain 1chd in training set Warning: unaligning (T0547)A263 (1chd)G323 because G (3-10) conformation "forbidden" or filtered. T0547 256 :TELRKMG 1chd 316 :REAINMG T0547 264 :K 1chd 324 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=65291 # 2d13A.256.132 read from T0547.t04.many.frag # found chain 2d13A in template set T0547 256 :TELRKMGAK 2d13A 133 :LEIIKLGFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65292 # 1rx0A.256.56 read from T0547.t04.many.frag # found chain 1rx0A in training set T0547 256 :TELRKMGAK 1rx0A 57 :RKAAQLGFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65293 # 1zy9A.256.325 read from T0547.t04.many.frag # found chain 1zy9A in template set T0547 256 :TELRKMGAK 1zy9A 314 :SSLRKMGYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=65294 # 1lfpA.256.184 read from T0547.t04.many.frag # found chain 1lfpA in training set Warning: unaligning (T0547)M261 (1lfpA)L190 because G (3-10) conformation "forbidden" or filtered. T0547 256 :TELRK 1lfpA 185 :ENLEK T0547 262 :GAK 1lfpA 191 :GVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=65296 # 1iow.256.101 read from T0547.t04.many.frag # found chain 1iow in template set T0547 256 :TELRKMGAK 1iow 102 :LLWQGAGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=65297 # 1jbeA.256.94 read from T0547.t04.many.frag # found chain 1jbeA in training set T0547 256 :TELRKMGAK 1jbeA 96 :IAAAQAGAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65298 # 1t4bA.256.82 read from T0547.t04.many.frag # found chain 1t4bA in training set T0547 256 :TELRKMGAK 1t4bA 83 :PKLRESGWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65299 # 1fobA.256.118 read from T0547.t04.many.frag # found chain 1fobA in training set T0547 256 :TELRKMGAK 1fobA 119 :NTFAENDID Number of specific fragments extracted= 1 number of extra gaps= 0 total=65300 # 2tpsA.256.163 read from T0547.t04.many.frag # found chain 2tpsA in training set T0547 256 :TELRKMGAK 2tpsA 172 :EAVRRQGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65301 # 1ne9A.256.118 read from T0547.t04.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)A263 (1ne9A)Y126 because P (beta_P) conformation "forbidden" or filtered. T0547 256 :TELRKMG 1ne9A 119 :TTLQDHG T0547 264 :K 1ne9A 127 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=65303 # 7odcA.256.219 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K264 (7odcA)S228 because N (gamma') conformation "forbidden" or filtered. T0547 256 :TELRKMGA 7odcA 220 :DMATEVGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=65304 # 1r6xA.256.179 read from T0547.t04.many.frag # found chain 1r6xA in training set T0547 256 :TELRKMGAK 1r6xA 181 :LEFQSRQWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=65305 # 1lzlA.256.270 read from T0547.t04.many.frag # found chain 1lzlA in training set Warning: unaligning (T0547)M261 (1lzlA)A276 because G (3-10) conformation "forbidden" or filtered. T0547 256 :TELRK 1lzlA 271 :LRLLQ T0547 262 :GAK 1lzlA 277 :GVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=65307 # 1v0wA.256.103 read from T0547.t04.many.frag # found chain 1v0wA in training set T0547 256 :TELRKMGAK 1v0wA 107 :KESAAKGNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65308 # 1bykA.257.108 read from T0547.t04.many.frag # found chain 1bykA in template set T0547 257 :ELRKMGAKN 1bykA 169 :RLYDQGHRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=65309 # 1tqhA.257.78 read from T0547.t04.many.frag # found chain 1tqhA in training set Warning: unaligning (T0547)N265 (1tqhA)K87 because E (beta_S) conformation "forbidden" or filtered. T0547 257 :ELRKMGAK 1tqhA 79 :FLKNKGYE Number of specific fragments extracted= 1 number of extra gaps= 1 total=65310 # 1hd2A.257.60 read from T0547.t04.many.frag # found chain 1hd2A in training set T0547 257 :ELRKMGAKN 1hd2A 61 :ALKAKGVQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65311 # 1yt8A.257.466 read from T0547.t04.many.frag # found chain 1yt8A in template set T0547 257 :ELRKMGAKN 1yt8A 467 :AWVAAGLPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65312 # 1j93A.257.280 read from T0547.t04.many.frag # found chain 1j93A in template set T0547 257 :ELRKMGAKN 1j93A 280 :DGRRRLGPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=65313 # 1u9yA.257.226 read from T0547.t04.many.frag # found chain 1u9yA in template set T0547 257 :ELRKMGAKN 1u9yA 227 :LLKEQGAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65314 # 1t4bA.257.83 read from T0547.t04.many.frag # found chain 1t4bA in training set T0547 257 :ELRKMGAKN 1t4bA 84 :KLRESGWQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65315 # 1r6xA.257.180 read from T0547.t04.many.frag # found chain 1r6xA in training set T0547 257 :ELRKMGAKN 1r6xA 182 :EFQSRQWDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=65316 # 1i0dA.257.252 read from T0547.t04.many.frag # found chain 1i0dA in template set T0547 257 :ELRKMGAKN 1i0dA 286 :ALIDQGYMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65317 # 1tzpA.257.64 read from T0547.t04.many.frag # found chain 1tzpA in training set T0547 257 :ELRKMGAKN 1tzpA 84 :QVSNLGMGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65318 # 1byi.257.160 read from T0547.t04.many.frag # found chain 1byi in training set Warning: unaligning (T0547)K264 (1byi)T168 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMGA 1byi 161 :VIQHAGL T0547 265 :N 1byi 169 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=65320 # 1t1jA.257.37 read from T0547.t04.many.frag # found chain 1t1jA in training set Warning: unaligning (T0547)K264 (1t1jA)V38 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMGA 1t1jA 31 :TIVRAGH T0547 265 :N 1t1jA 39 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=65322 # 1nnwA.257.25 read from T0547.t04.many.frag # found chain 1nnwA in template set Warning: unaligning (T0547)A263 (1nnwA)Y32 because E (beta_S) conformation "forbidden" or filtered. T0547 257 :ELRKMG 1nnwA 26 :EMREEG T0547 264 :KN 1nnwA 33 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=65324 # 1iow.257.102 read from T0547.t04.many.frag # found chain 1iow in template set Warning: unaligning (T0547)M261 (1iow)A107 because G (3-10) conformation "forbidden" or filtered. T0547 257 :ELRK 1iow 103 :LWQG T0547 262 :GAKN 1iow 108 :GLPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65326 # 1rq2A.257.119 read from T0547.t04.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)K264 (1rq2A)L124 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMGA 1rq2A 117 :IARKLGA T0547 265 :N 1rq2A 125 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=65328 # 1jbeA.257.95 read from T0547.t04.many.frag # found chain 1jbeA in training set Warning: unaligning (T0547)A263 (1jbeA)A103 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMG 1jbeA 97 :AAAQAG T0547 264 :KN 1jbeA 104 :SG Number of specific fragments extracted= 2 number of extra gaps= 1 total=65330 # 1pii.257.269 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)A263 (1pii)A276 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMG 1pii 270 :AAYDAG T0547 264 :KN 1pii 277 :IY Number of specific fragments extracted= 2 number of extra gaps= 1 total=65332 # 1jftA.257.255 read from T0547.t04.many.frag # found chain 1jftA in template set T0547 257 :ELRKMGAKN 1jftA 257 :AADEMGLRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65333 # 2tpsA.257.164 read from T0547.t04.many.frag # found chain 2tpsA in training set T0547 257 :ELRKMGAKN 2tpsA 173 :AVRRQGISI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65334 # 1oi7A.257.162 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 257 :ELRKMGAKN 1oi7A 163 :ALSQAGLGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65335 # 1jfxA.257.77 read from T0547.t04.many.frag # found chain 1jfxA in training set Warning: unaligning (T0547)K260 (1jfxA)S81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1jfxA)G84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1jfxA)G85 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELR 1jfxA 78 :YFA T0547 261 :MG 1jfxA 82 :NG T0547 265 :N 1jfxA 86 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=65338 # 1v0wA.257.104 read from T0547.t04.many.frag # found chain 1v0wA in training set T0547 257 :ELRKMGAKN 1v0wA 108 :ESAAKGNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65339 # 1uwkA.257.249 read from T0547.t04.many.frag # found chain 1uwkA in training set Warning: unaligning (T0547)N265 (1uwkA)P258 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMGAK 1uwkA 250 :ELVKRGVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=65340 # 1nekA.257.97 read from T0547.t04.many.frag # found chain 1nekA in template set Warning: unaligning (T0547)A263 (1nekA)L104 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMG 1nekA 98 :ELEHMG T0547 264 :KN 1nekA 105 :PF Number of specific fragments extracted= 2 number of extra gaps= 1 total=65342 # 1vhwA.257.190 read from T0547.t04.many.frag # found chain 1vhwA in training set T0547 257 :ELRKMGAKN 1vhwA 189 :VAAEYGAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65343 # 1ryiA.257.91 read from T0547.t04.many.frag # found chain 1ryiA in training set Warning: unaligning (T0547)G262 (1ryiA)S84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1ryiA)G85 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1ryiA)V86 because E (beta_S) conformation "forbidden" or filtered. T0547 257 :ELRKM 1ryiA 79 :ELYAL T0547 265 :N 1ryiA 87 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=65345 # 1r0mA.257.284 read from T0547.t04.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)K264 (1r0mA)P292 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMGA 1r0mA 285 :VAQSFGA T0547 265 :N 1r0mA 293 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=65347 # 1aisB.257.134 read from T0547.t04.many.frag # found chain 1aisB in template set T0547 257 :ELRKMGAKN 1aisB 1235 :EAYKRGLTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65348 # 1lfpA.257.185 read from T0547.t04.many.frag # found chain 1lfpA in training set Warning: unaligning (T0547)M261 (1lfpA)L190 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1lfpA)P193 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRK 1lfpA 186 :NLEK T0547 262 :GA 1lfpA 191 :GV T0547 265 :N 1lfpA 194 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=65351 # 2atzA.257.92 read from T0547.t04.many.frag # found chain 2atzA in template set T0547 257 :ELRKMGAKN 2atzA 93 :LLREEGFMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=65352 # 1bykA.258.109 read from T0547.t04.many.frag # found chain 1bykA in template set T0547 258 :LRKMGAKNL 1bykA 170 :LYDQGHRNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65353 # 1tqhA.258.79 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 258 :LRKMGAKNL 1tqhA 80 :LKNKGYEKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65354 # 1j93A.258.281 read from T0547.t04.many.frag # found chain 1j93A in template set Warning: unaligning (T0547)A263 (1j93A)G286 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1j93A)P287 because G (3-10) conformation "forbidden" or filtered. T0547 258 :LRKMG 1j93A 281 :GRRRL T0547 265 :NL 1j93A 288 :NV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65356 # 1hd2A.258.61 read from T0547.t04.many.frag # found chain 1hd2A in training set T0547 258 :LRKMGAKNL 1hd2A 62 :LKAKGVQVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65357 # 1u9yA.258.227 read from T0547.t04.many.frag # found chain 1u9yA in template set T0547 258 :LRKMGAKNL 1u9yA 228 :LKEQGAKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65358 # 1ryiA.258.92 read from T0547.t04.many.frag # found chain 1ryiA in training set Warning: unaligning (T0547)A263 (1ryiA)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 258 :LRKMG 1ryiA 80 :LYALS T0547 264 :KNL 1ryiA 86 :VDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=65360 # 1rq2A.258.120 read from T0547.t04.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)N265 (1rq2A)T125 because E (beta_S) conformation "forbidden" or filtered. T0547 258 :LRKMGAK 1rq2A 118 :ARKLGAL T0547 266 :L 1rq2A 126 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=65362 # 1nu0A.258.82 read from T0547.t04.many.frag # found chain 1nu0A in training set T0547 258 :LRKMGAKNL 1nu0A 83 :IHGRFGVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65363 # 1wnaA.258.80 read from T0547.t04.many.frag # found chain 1wnaA in training set Warning: unaligning (T0547)A263 (1wnaA)A86 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRKMG 1wnaA 81 :LLAQG T0547 264 :KNL 1wnaA 87 :RRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=65365 # 1i0dA.258.253 read from T0547.t04.many.frag # found chain 1i0dA in template set T0547 258 :LRKMGAKNL 1i0dA 287 :LIDQGYMKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=65366 # 1vhwA.258.191 read from T0547.t04.many.frag # found chain 1vhwA in training set T0547 258 :LRKMGAKNL 1vhwA 190 :AAEYGAKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65367 # 1tzpA.258.65 read from T0547.t04.many.frag # found chain 1tzpA in training set T0547 258 :LRKMGAKNL 1tzpA 85 :VSNLGMGTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65368 # 1ki9A.258.161 read from T0547.t04.many.frag # found chain 1ki9A in template set T0547 258 :LRKMGAKNL 1ki9A 162 :YGVLTGATV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65369 # 1byi.258.161 read from T0547.t04.many.frag # found chain 1byi in training set Warning: unaligning (T0547)K264 (1byi)T168 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRKMGA 1byi 162 :IQHAGL T0547 265 :NL 1byi 169 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=65371 # 1wu7A.258.248 read from T0547.t04.many.frag # found chain 1wu7A in template set T0547 258 :LRKMGAKNL 1wu7A 249 :LASYGVKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65372 # 1r6xA.258.181 read from T0547.t04.many.frag # found chain 1r6xA in training set T0547 258 :LRKMGAKNL 1r6xA 183 :FQSRQWDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65373 # 2bfdB.258.243 read from T0547.t04.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)A263 (2bfdB)G246 because L (left) conformation "forbidden" or filtered. T0547 258 :LRKMG 2bfdB 241 :AKEKL T0547 264 :KNL 2bfdB 247 :VSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=65375 # 1yt8A.258.467 read from T0547.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)M261 (1yt8A)A471 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1yt8A)P474 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRK 1yt8A 468 :WVA T0547 262 :GA 1yt8A 472 :GL T0547 265 :NL 1yt8A 475 :TE Number of specific fragments extracted= 3 number of extra gaps= 2 total=65378 # 1jbeA.258.96 read from T0547.t04.many.frag # found chain 1jbeA in training set Warning: unaligning (T0547)N265 (1jbeA)G105 because Y (epsilon') conformation "forbidden" or filtered. T0547 258 :LRKMGAK 1jbeA 98 :AAQAGAS T0547 266 :L 1jbeA 106 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=65380 # 1oi7A.258.163 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 258 :LRKMGAKNL 1oi7A 164 :LSQAGLGTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65381 # 1v7zA.258.105 read from T0547.t04.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)A263 (1v7zA)A111 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRKMG 1v7zA 106 :LARHG T0547 264 :KNL 1v7zA 112 :RRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=65383 # 1m22A.258.116 read from T0547.t04.many.frag # found chain 1m22A in training set T0547 258 :LRKMGAKNL 1m22A 154 :LRDAGAVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65384 # 1iow.258.103 read from T0547.t04.many.frag # found chain 1iow in template set T0547 258 :LRKMGAKNL 1iow 104 :WQGAGLPVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65385 # 1t4bA.258.84 read from T0547.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)M261 (1t4bA)S88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1t4bA)G92 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRK 1t4bA 85 :LRE T0547 262 :GAK 1t4bA 89 :GWQ T0547 266 :L 1t4bA 93 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=65388 # 1uwkA.258.250 read from T0547.t04.many.frag # found chain 1uwkA in training set T0547 258 :LRKMGAKNL 1uwkA 251 :LVKRGVRPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=65389 # 1nytA.258.225 read from T0547.t04.many.frag # found chain 1nytA in training set T0547 258 :LRKMGAKNL 1nytA 226 :CEQRGSKRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=65390 # 1ursA.258.52 read from T0547.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)A263 (1ursA)G58 because T (delta_L) conformation "forbidden" or filtered. T0547 258 :LRKMG 1ursA 53 :WAKAH T0547 264 :KNL 1ursA 59 :DKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65392 # 1lfpA.258.186 read from T0547.t04.many.frag # found chain 1lfpA in training set Warning: unaligning (T0547)K264 (1lfpA)P193 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRKMGA 1lfpA 187 :LEKLGV T0547 265 :NL 1lfpA 194 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=65394 # 2atzA.258.93 read from T0547.t04.many.frag # found chain 2atzA in template set Warning: unaligning (T0547)N265 (2atzA)N101 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 (2atzA)F102 because Y (epsilon') conformation "forbidden" or filtered. T0547 258 :LRKMGAK 2atzA 94 :LREEGFM Number of specific fragments extracted= 1 number of extra gaps= 1 total=65395 # 1pii.258.270 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)N265 (1pii)Y278 because E (beta_S) conformation "forbidden" or filtered. T0547 258 :LRKMGAK 1pii 271 :AYDAGAI T0547 266 :L 1pii 279 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=65397 # 1hd2A.259.62 read from T0547.t04.many.frag # found chain 1hd2A in training set T0547 259 :RKMGAKNLK 1hd2A 63 :KAKGVQVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65398 # 1bykA.259.110 read from T0547.t04.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)M261 (1bykA)Q173 because G (3-10) conformation "forbidden" or filtered. T0547 259 :RK 1bykA 171 :YD T0547 262 :GAKNLK 1bykA 174 :GHRNIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=65400 # 1tqhA.259.80 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 259 :RKMGAKNLK 1tqhA 81 :KNKGYEKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65401 # 1u9yA.259.228 read from T0547.t04.many.frag # found chain 1u9yA in template set T0547 259 :RKMGAKNLK 1u9yA 229 :KEQGAKKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=65402 # 1vhwA.259.192 read from T0547.t04.many.frag # found chain 1vhwA in training set Warning: unaligning (T0547)N265 (1vhwA)A197 because Y (epsilon') conformation "forbidden" or filtered. T0547 259 :RKMGAK 1vhwA 191 :AEYGAK T0547 266 :LK 1vhwA 198 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=65404 # 1rq2A.259.121 read from T0547.t04.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)K264 (1rq2A)L124 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKMGA 1rq2A 119 :RKLGA T0547 265 :NLK 1rq2A 125 :TVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=65406 # 1j93A.259.282 read from T0547.t04.many.frag # found chain 1j93A in template set Warning: unaligning (T0547)A263 (1j93A)G286 because S (epsilon) conformation "forbidden" or filtered. T0547 259 :RKMG 1j93A 282 :RRRL T0547 264 :KNLK 1j93A 287 :PNVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=65408 # 1wnaA.259.81 read from T0547.t04.many.frag # found chain 1wnaA in training set T0547 259 :RKMGAKNLK 1wnaA 82 :LAQGARRFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65409 # 1wu7A.259.249 read from T0547.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)K267 (1wu7A)R258 because E (beta_S) conformation "forbidden" or filtered. T0547 259 :RKMGAKNL 1wu7A 250 :ASYGVKNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=65410 # 1woyA.259.273 read from T0547.t04.many.frag # found chain 1woyA in template set T0547 259 :RKMGAKNLK 1woyA 274 :KAAGIPMYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=65411 # 1nu0A.259.83 read from T0547.t04.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)G262 (1nu0A)F87 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1nu0A)V89 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKM 1nu0A 84 :HGR T0547 263 :A 1nu0A 88 :G T0547 265 :NLK 1nu0A 90 :EVK Number of specific fragments extracted= 3 number of extra gaps= 2 total=65414 # 1v7zA.259.106 read from T0547.t04.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)A263 (1v7zA)A111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1v7zA)R113 because E (beta_S) conformation "forbidden" or filtered. T0547 259 :RKMG 1v7zA 107 :ARHG T0547 264 :K 1v7zA 112 :R T0547 266 :LK 1v7zA 114 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=65417 # 1tzpA.259.66 read from T0547.t04.many.frag # found chain 1tzpA in training set Warning: unaligning (T0547)N265 (1tzpA)T92 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKMGAK 1tzpA 86 :SNLGMG T0547 266 :LK 1tzpA 93 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=65419 # 1byi.259.162 read from T0547.t04.many.frag # found chain 1byi in training set T0547 259 :RKMGAKNLK 1byi 163 :QHAGLTLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65420 # 1smbA.259.21 read from T0547.t04.many.frag # found chain 1smbA in training set T0547 259 :RKMGAKNLK 1smbA 22 :QKHGVPPLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65421 # 1iirA.259.113 read from T0547.t04.many.frag # found chain 1iirA in training set T0547 259 :RKMGAKNLK 1iirA 114 :EKLGIPYFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65422 # 1ki9A.259.162 read from T0547.t04.many.frag # found chain 1ki9A in template set Warning: unaligning (T0547)G262 (1ki9A)T166 because G (3-10) conformation "forbidden" or filtered. T0547 259 :RKM 1ki9A 163 :GVL T0547 263 :AKNLK 1ki9A 167 :GATVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=65424 # 2bfdB.259.244 read from T0547.t04.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)G262 (2bfdB)L245 because G (3-10) conformation "forbidden" or filtered. T0547 259 :RKM 2bfdB 242 :KEK T0547 263 :AKNLK 2bfdB 246 :GVSCE Number of specific fragments extracted= 2 number of extra gaps= 1 total=65426 # 1ryiA.259.93 read from T0547.t04.many.frag # found chain 1ryiA in training set Warning: unaligning (T0547)G262 (1ryiA)S84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1ryiA)R89 because L (left) conformation "forbidden" or filtered. T0547 259 :RKM 1ryiA 81 :YAL T0547 263 :AKNL 1ryiA 85 :GVDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=65428 # 1fsgA.259.165 read from T0547.t04.many.frag # found chain 1fsgA in training set T0547 259 :RKMGAKNLK 1fsgA 163 :KAVGPKSMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=65429 1f2vA expands to /projects/compbio/data/pdb/1f2v.pdb.gz 1f2vA:# 1f2vA.259.157 read from T0547.t04.many.frag # adding 1f2vA to template set # found chain 1f2vA in template set Warning: unaligning (T0547)M261 (1f2vA)D151 because G (3-10) conformation "forbidden" or filtered. T0547 259 :RK 1f2vA 149 :LR T0547 262 :GAKNLK 1f2vA 152 :GAPKPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=65431 # 1oi7A.259.164 read from T0547.t04.many.frag # found chain 1oi7A in training set T0547 259 :RKMGAKNLK 1oi7A 165 :SQAGLGTTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65432 # 1lxjA.259.67 read from T0547.t04.many.frag # found chain 1lxjA in training set Warning: unaligning (T0547)K267 (1lxjA)H76 because E (beta_S) conformation "forbidden" or filtered. T0547 259 :RKMGAKNL 1lxjA 68 :HEKGYVRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=65433 # 1km4A.259.167 read from T0547.t04.many.frag # found chain 1km4A in template set T0547 259 :RKMGAKNLK 1km4A 168 :REIIGQDSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=65434 # 1zghA.259.120 read from T0547.t04.many.frag # found chain 1zghA in template set Warning: unaligning (T0547)L266 (1zghA)T98 because Y (epsilon') conformation "forbidden" or filtered. T0547 259 :RKMGAKN 1zghA 91 :IERGIKK T0547 267 :K 1zghA 99 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=65436 # 1vkmA.259.214 read from T0547.t04.many.frag # found chain 1vkmA in template set T0547 259 :RKMGAKNLK 1vkmA 203 :KEMELEKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65437 # 1ursA.259.53 read from T0547.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)A263 (1ursA)G58 because T (delta_L) conformation "forbidden" or filtered. T0547 259 :RKMG 1ursA 54 :AKAH T0547 264 :KNLK 1ursA 59 :DKVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=65439 # 2czlA.259.111 read from T0547.t04.many.frag # found chain 2czlA in training set Warning: unaligning (T0547)K264 (2czlA)Q117 because G (3-10) conformation "forbidden" or filtered. T0547 259 :RKMGA 2czlA 112 :LSLYA T0547 265 :NLK 2czlA 118 :GFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65441 # 1ct5A.259.208 read from T0547.t04.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)S216 Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)S216 T0547 259 :RKMGA 1ct5A 210 :DAKFG T0547 266 :LK 1ct5A 217 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=65443 # 1m22A.259.117 read from T0547.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)A263 (1m22A)A159 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1m22A)G163 because Y (epsilon') conformation "forbidden" or filtered. T0547 259 :RKMG 1m22A 155 :RDAG T0547 264 :KNL 1m22A 160 :VVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=65445 # 1hd2A.260.63 read from T0547.t04.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)A263 (1hd2A)V67 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KMG 1hd2A 64 :AKG T0547 264 :KNLKA 1hd2A 68 :QVVAC Number of specific fragments extracted= 2 number of extra gaps= 1 total=65447 # 1bykA.260.111 read from T0547.t04.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)A263 (1bykA)H175 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KMG 1bykA 172 :DQG T0547 264 :KNLKA 1bykA 176 :RNISY Number of specific fragments extracted= 2 number of extra gaps= 1 total=65449 # 1u9yA.260.229 read from T0547.t04.many.frag # found chain 1u9yA in template set T0547 260 :KMGAKNLKA 1u9yA 230 :EQGAKKIIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65450 # 1tqhA.260.81 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 260 :KMGAKNLKA 1tqhA 82 :NKGYEKIAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65451 # 2bfdB.260.245 read from T0547.t04.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)A263 (2bfdB)G246 because L (left) conformation "forbidden" or filtered. T0547 260 :KMG 2bfdB 243 :EKL T0547 264 :KNLKA 2bfdB 247 :VSCEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65453 # 1fsgA.260.166 read from T0547.t04.many.frag # found chain 1fsgA in training set T0547 260 :KMGAKNLKA 1fsgA 164 :AVGPKSMRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65454 # 1smbA.260.22 read from T0547.t04.many.frag # found chain 1smbA in training set Warning: unaligning (T0547)M261 (1smbA)H24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1smbA)K33 T0547 260 :K 1smbA 23 :K T0547 262 :GAKNLK 1smbA 25 :GVPPLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=65456 # 1vkhA.260.109 read from T0547.t04.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)N265 (1vkhA)N103 because Y (epsilon') conformation "forbidden" or filtered. T0547 260 :KMGAK 1vkhA 98 :EKGLT T0547 266 :LKA 1vkhA 104 :INM Number of specific fragments extracted= 2 number of extra gaps= 1 total=65458 # 1woyA.260.274 read from T0547.t04.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)A263 (1woyA)I278 because E (beta_S) conformation "forbidden" or filtered. T0547 260 :KMG 1woyA 275 :AAG T0547 264 :KNLKA 1woyA 279 :PMYRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=65460 # 1sz2A.260.99 read from T0547.t04.many.frag # found chain 1sz2A in template set Warning: unaligning (T0547)A268 (1sz2A)I97 because E (beta_S) conformation "forbidden" or filtered. T0547 260 :KMGAKNLK 1sz2A 89 :NLGFSHLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=65461 # 1wnaA.260.82 read from T0547.t04.many.frag # found chain 1wnaA in training set T0547 260 :KMGAKNLKA 1wnaA 83 :AQGARRFYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65462 # 1rq2A.260.122 read from T0547.t04.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)A268 (1rq2A)V128 because D (zeta) conformation "forbidden" or filtered. T0547 260 :KMGAKNLK 1rq2A 120 :KLGALTVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=65463 # 1byi.260.163 read from T0547.t04.many.frag # found chain 1byi in training set Warning: unaligning (T0547)K267 (1byi)G171 because Y (epsilon') conformation "forbidden" or filtered. T0547 260 :KMGAKNL 1byi 164 :HAGLTLA T0547 268 :A 1byi 172 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=65465 # 1vhwA.260.193 read from T0547.t04.many.frag # found chain 1vhwA in training set Warning: unaligning (T0547)N265 (1vhwA)A197 because Y (epsilon') conformation "forbidden" or filtered. T0547 260 :KMGAK 1vhwA 192 :EYGAK T0547 266 :LKA 1vhwA 198 :LAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=65467 # 1v7zA.260.107 read from T0547.t04.many.frag # found chain 1v7zA in training set T0547 260 :KMGAKNLKA 1v7zA 108 :RHGARRLVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65468 # 1bykA.260.192 read from T0547.t04.many.frag # found chain 1bykA in template set T0547 260 :KMGAKNLKA 1bykA 253 :EQRIDTLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65469 # 1f2vA.260.158 read from T0547.t04.many.frag # found chain 1f2vA in template set Warning: unaligning (T0547)N265 (1f2vA)K155 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KMGAK 1f2vA 150 :RDGAP T0547 266 :LKA 1f2vA 156 :PAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=65471 # 1zr5A.260.144 read from T0547.t04.many.frag # found chain 1zr5A in template set Warning: unaligning (T0547)A268 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zr5A)P310 T0547 260 :KMGAKNLK 1zr5A 301 :DKKLKSIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=65472 # 1iirA.260.114 read from T0547.t04.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)K264 (1iirA)P119 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KMGA 1iirA 115 :KLGI T0547 265 :NLKA 1iirA 120 :YFYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=65474 # 1ursA.260.54 read from T0547.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)A263 (1ursA)G58 because T (delta_L) conformation "forbidden" or filtered. T0547 260 :KMG 1ursA 55 :KAH T0547 264 :KNLKA 1ursA 59 :DKVIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65476 # 1vkmA.260.215 read from T0547.t04.many.frag # found chain 1vkmA in template set T0547 260 :KMGAKNLKA 1vkmA 204 :EMELEKTLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=65477 # 1e0tA.260.208 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)H216 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)H216 T0547 260 :KMGAKN 1e0tA 209 :AHGGEN T0547 268 :A 1e0tA 217 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=65479 # 1wu7A.260.250 read from T0547.t04.many.frag # found chain 1wu7A in template set T0547 260 :KMGAKNLKA 1wu7A 251 :SYGVKNVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=65480 # 1nu0A.260.84 read from T0547.t04.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)G262 (1nu0A)F87 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1nu0A)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 260 :KM 1nu0A 85 :GR T0547 264 :KNLKA 1nu0A 89 :VEVKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=65482 # 1oi7A.260.165 read from T0547.t04.many.frag # found chain 1oi7A in training set Warning: unaligning (T0547)K264 (1oi7A)G170 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1oi7A)T171 because E (beta_S) conformation "forbidden" or filtered. T0547 260 :KMGA 1oi7A 166 :QAGL T0547 266 :LKA 1oi7A 172 :TTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=65484 # 1hi9A.260.161 read from T0547.t04.many.frag # found chain 1hi9A in template set Warning: unaligning (T0547)K264 (1hi9A)P166 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KMGA 1hi9A 162 :EELI T0547 265 :NLKA 1hi9A 167 :NVTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=65486 # 1hqsA.260.209 read from T0547.t04.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)N265 (1hqsA)S215 because Y (epsilon') conformation "forbidden" or filtered. T0547 260 :KMGAK 1hqsA 210 :EHGRK T0547 266 :LKA 1hqsA 216 :VTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=65488 # 1xdnA.260.97 read from T0547.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)A263 (1xdnA)L148 because E (beta_S) conformation "forbidden" or filtered. T0547 260 :KMG 1xdnA 145 :KYG T0547 264 :KNLKA 1xdnA 149 :SRVGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=65490 # 1p1mA.260.215 read from T0547.t04.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)M261 (1p1mA)I217 because G (3-10) conformation "forbidden" or filtered. T0547 260 :K 1p1mA 216 :N T0547 262 :GAKNLKA 1p1mA 218 :GLKEVKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=65492 # 1tzpA.260.67 read from T0547.t04.many.frag # found chain 1tzpA in training set Warning: unaligning (T0547)A263 (1tzpA)M90 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KMG 1tzpA 87 :NLG T0547 264 :KNLKA 1tzpA 91 :GTVLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=65494 # 1hd2A.261.64 read from T0547.t04.many.frag # found chain 1hd2A in training set T0547 261 :MGAKNLKAI 1hd2A 65 :KGVQVVACL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65495 # 1vkhA.261.110 read from T0547.t04.many.frag # found chain 1vkhA in template set T0547 261 :MGAKNLKAI 1vkhA 99 :KGLTNINMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65496 # 2bfdB.261.246 read from T0547.t04.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)K264 (2bfdB)V247 because E (beta_S) conformation "forbidden" or filtered. T0547 261 :MGA 2bfdB 244 :KLG T0547 265 :NLKAI 2bfdB 248 :SCEVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=65498 # 1bykA.261.112 read from T0547.t04.many.frag # found chain 1bykA in template set T0547 261 :MGAKNLKAI 1bykA 173 :QGHRNISYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65499 # 1sz2A.261.100 read from T0547.t04.many.frag # found chain 1sz2A in template set T0547 261 :MGAKNLKAI 1sz2A 90 :LGFSHLEII Number of specific fragments extracted= 1 number of extra gaps= 0 total=65500 # 1mj5A.261.257 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G262 (1mj5A)T259 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1mj5A)T264 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1mj5A)T264 T0547 261 :M 1mj5A 258 :R T0547 263 :AKN 1mj5A 260 :WPN T0547 268 :AI 1mj5A 265 :EI Number of specific fragments extracted= 3 number of extra gaps= 2 total=65503 # 1bykA.261.193 read from T0547.t04.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)M261 (1bykA)Q254 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1bykA)Q260 because P (beta_P) conformation "forbidden" or filtered. T0547 262 :GAKNL 1bykA 255 :RIDTL T0547 268 :AI 1bykA 261 :LA Number of specific fragments extracted= 2 number of extra gaps= 2 total=65505 # 1woyA.261.275 read from T0547.t04.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)N265 (1woyA)M280 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :MGAK 1woyA 276 :AGIP T0547 266 :LKAI 1woyA 281 :YRHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=65507 # 1fvpA.261.189 read from T0547.t04.many.frag # found chain 1fvpA in template set Warning: unaligning (T0547)G262 (1fvpA)F191 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1fvpA)D192 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1fvpA)N193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1fvpA)D196 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1fvpA)D196 T0547 261 :M 1fvpA 190 :K T0547 265 :N 1fvpA 194 :T T0547 268 :AI 1fvpA 197 :FL Number of specific fragments extracted= 3 number of extra gaps= 2 total=65510 # 1hi9A.261.162 read from T0547.t04.many.frag # found chain 1hi9A in template set Warning: unaligning (T0547)A263 (1hi9A)I165 because E (beta_S) conformation "forbidden" or filtered. T0547 261 :MG 1hi9A 163 :EL T0547 264 :KNLKAI 1hi9A 166 :PNVTTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=65512 # 1fsgA.261.167 read from T0547.t04.many.frag # found chain 1fsgA in training set T0547 261 :MGAKNLKAI 1fsgA 165 :VGPKSMRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65513 # 1f2vA.261.159 read from T0547.t04.many.frag # found chain 1f2vA in template set T0547 261 :MGAKNLKAI 1f2vA 151 :DGAPKPAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65514 # 1u9yA.261.230 read from T0547.t04.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)M261 (1u9yA)Q231 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1u9yA)A233 because P (beta_P) conformation "forbidden" or filtered. T0547 262 :G 1u9yA 232 :G T0547 264 :KNLKAI 1u9yA 234 :KKIIAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=65516 # 1njrA.261.179 read from T0547.t04.many.frag # found chain 1njrA in template set Warning: unaligning (T0547)G262 (1njrA)S181 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :M 1njrA 180 :H T0547 263 :AKNLKAI 1njrA 182 :PKDIDGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=65518 # 1i1wA.261.117 read from T0547.t04.many.frag # found chain 1i1wA in training set T0547 261 :MGAKNLKAI 1i1wA 118 :RYKGKIRAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=65519 # 1p1mA.261.216 read from T0547.t04.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)N265 (1p1mA)E221 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1p1mA)T224 because E (beta_S) conformation "forbidden" or filtered. T0547 261 :MGAK 1p1mA 217 :IGLK T0547 266 :LK 1p1mA 222 :VK T0547 269 :I 1p1mA 225 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=65522 # 1e0tA.261.209 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)M261 (1e0tA)H210 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)H216 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)H216 T0547 262 :GAKN 1e0tA 211 :GGEN T0547 268 :AI 1e0tA 217 :II Number of specific fragments extracted= 2 number of extra gaps= 2 total=65524 # 1rjdA.261.116 read from T0547.t04.many.frag # found chain 1rjdA in training set Warning: unaligning (T0547)K267 (1rjdA)A123 because E (beta_S) conformation "forbidden" or filtered. T0547 261 :MGAKNL 1rjdA 117 :QMFPHL T0547 268 :AI 1rjdA 124 :YV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65526 # 1q0uA.261.176 read from T0547.t04.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)G262 (1q0uA)M178 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1q0uA)P179 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :M 1q0uA 177 :R T0547 264 :KNLKAI 1q0uA 180 :KDLQML Number of specific fragments extracted= 2 number of extra gaps= 1 total=65528 # 1smbA.261.23 read from T0547.t04.many.frag # found chain 1smbA in training set Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1smbA)K33 T0547 261 :MGAKNLK 1smbA 24 :HGVPPLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65529 # 2bogX.261.207 read from T0547.t04.many.frag # found chain 2bogX in training set T0547 261 :MGAKNLKAI 2bogX 208 :IGNPSLRAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65530 # 1hqsA.261.210 read from T0547.t04.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)M261 (1hqsA)H211 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1hqsA)S215 because Y (epsilon') conformation "forbidden" or filtered. T0547 262 :GAK 1hqsA 212 :GRK T0547 266 :LKAI 1hqsA 216 :VTLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=65532 # 1vkmA.261.216 read from T0547.t04.many.frag # found chain 1vkmA in template set T0547 261 :MGAKNLKAI 1vkmA 205 :MELEKTLMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65533 # 1ug6A.261.150 read from T0547.t04.many.frag # found chain 1ug6A in training set T0547 261 :MGAKNLKAI 1ug6A 151 :ALADRVPFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=65534 # 1ursA.261.55 read from T0547.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)A263 (1ursA)G58 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1ursA)I62 because E (beta_S) conformation "forbidden" or filtered. T0547 261 :MG 1ursA 56 :AH T0547 264 :KNL 1ursA 59 :DKV T0547 268 :AI 1ursA 63 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=65537 # 1tqhA.261.82 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 261 :MGAKNLKAI 1tqhA 83 :KGYEKIAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65538 # 1zr5A.261.145 read from T0547.t04.many.frag # found chain 1zr5A in template set Warning: unaligning (T0547)A268 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zr5A)P310 Warning: unaligning (T0547)I269 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zr5A)P310 T0547 261 :MGAKNLK 1zr5A 302 :KKLKSIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=65539 # 2ab0A.261.61 read from T0547.t04.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)A263 (2ab0A)D64 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE in next template residue (2ab0A)E66 Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE at template residue (2ab0A)E66 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 T0547 261 :MG 2ab0A 62 :VA T0547 267 :KAI 2ab0A 68 :DVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=65541 # 1mqoA.261.197 read from T0547.t04.many.frag # found chain 1mqoA in training set Warning: unaligning (T0547)N265 (1mqoA)N255 because D (zeta) conformation "forbidden" or filtered. T0547 261 :MGAK 1mqoA 251 :KRYR T0547 266 :LKAI 1mqoA 256 :INAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65543 # 1of8A.261.304 read from T0547.t04.many.frag # found chain 1of8A in training set Warning: unaligning (T0547)A268 (1of8A)G312 because E (beta_S) conformation "forbidden" or filtered. T0547 261 :MGAKNLK 1of8A 305 :NGENAIT T0547 269 :I 1of8A 313 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=65545 # 2bfdB.262.247 read from T0547.t04.many.frag # found chain 2bfdB in training set T0547 262 :GAKNLKAIN 2bfdB 245 :LGVSCEVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=65546 # 1q0uA.262.177 read from T0547.t04.many.frag # found chain 1q0uA in template set T0547 262 :GAKNLKAIN 1q0uA 178 :MPKDLQMLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65547 # 1hd2A.262.65 read from T0547.t04.many.frag # found chain 1hd2A in training set T0547 262 :GAKNLKAIN 1hd2A 66 :GVQVVACLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65548 # 1vkhA.262.111 read from T0547.t04.many.frag # found chain 1vkhA in template set T0547 262 :GAKNLKAIN 1vkhA 100 :GLTNINMVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65549 # 1sz2A.262.101 read from T0547.t04.many.frag # found chain 1sz2A in template set Warning: unaligning (T0547)K267 (1sz2A)E96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1sz2A)I97 because E (beta_S) conformation "forbidden" or filtered. T0547 262 :GAKNL 1sz2A 91 :GFSHL T0547 269 :IN 1sz2A 98 :IN Number of specific fragments extracted= 2 number of extra gaps= 1 total=65551 # 1i1wA.262.118 read from T0547.t04.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)A263 (1i1wA)K120 because P (beta_P) conformation "forbidden" or filtered. T0547 262 :G 1i1wA 119 :Y T0547 264 :KNLKAIN 1i1wA 121 :GKIRAWD Number of specific fragments extracted= 2 number of extra gaps= 1 total=65553 # 1woyA.262.276 read from T0547.t04.many.frag # found chain 1woyA in template set T0547 262 :GAKNLKAIN 1woyA 277 :GIPMYRHLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=65554 # 1mj5A.262.258 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G262 (1mj5A)T259 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1mj5A)P261 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1mj5A)N262 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1mj5A)T264 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1mj5A)T264 T0547 263 :A 1mj5A 260 :W T0547 268 :AIN 1mj5A 265 :EIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=65556 # 1fvpA.262.190 read from T0547.t04.many.frag # found chain 1fvpA in template set Warning: unaligning (T0547)G262 (1fvpA)F191 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1fvpA)D192 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1fvpA)N193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1fvpA)D196 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1fvpA)D196 Warning: unaligning (T0547)A268 (1fvpA)F197 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :N 1fvpA 194 :T T0547 269 :IN 1fvpA 198 :LL Number of specific fragments extracted= 2 number of extra gaps= 2 total=65558 # 1rjdA.262.117 read from T0547.t04.many.frag # found chain 1rjdA in training set Warning: unaligning (T0547)N270 (1rjdA)D126 because P (beta_P) conformation "forbidden" or filtered. T0547 262 :GAKNLKAI 1rjdA 118 :MFPHLAYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=65559 # 1bykA.262.113 read from T0547.t04.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)K267 (1bykA)S179 because P (beta_P) conformation "forbidden" or filtered. T0547 262 :GAKNL 1bykA 174 :GHRNI T0547 268 :AIN 1bykA 180 :YLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=65561 # 2bogX.262.208 read from T0547.t04.many.frag # found chain 2bogX in training set T0547 262 :GAKNLKAIN 2bogX 209 :GNPSLRAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65562 # 2ab0A.262.62 read from T0547.t04.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE in next template residue (2ab0A)E66 Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE at template residue (2ab0A)E66 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 T0547 262 :GA 2ab0A 63 :AD T0547 267 :KAIN 2ab0A 68 :DVIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65564 # 2fnaA.262.166 read from T0547.t04.many.frag # found chain 2fnaA in template set T0547 262 :GAKNLKAIN 2fnaA 166 :NLKRIKFIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=65565 # 1bykA.262.194 read from T0547.t04.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)N270 (1bykA)S263 because Y (epsilon') conformation "forbidden" or filtered. T0547 262 :GAKNLKAI 1bykA 255 :RIDTLQLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=65566 # 1njrA.262.180 read from T0547.t04.many.frag # found chain 1njrA in template set Warning: unaligning (T0547)G262 (1njrA)S181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1njrA)I189 because P (beta_P) conformation "forbidden" or filtered. T0547 263 :AKNLKAI 1njrA 182 :PKDIDGL Number of specific fragments extracted= 1 number of extra gaps= 2 total=65567 # 1mqoA.262.198 read from T0547.t04.many.frag # found chain 1mqoA in training set T0547 262 :GAKNLKAIN 1mqoA 252 :RYRNINAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65568 # 1nvmB.262.93 read from T0547.t04.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)A263 (1nvmB)K95 because D (zeta) conformation "forbidden" or filtered. T0547 262 :G 1nvmB 94 :A T0547 264 :KNLKAIN 1nvmB 96 :PGIRLID Number of specific fragments extracted= 2 number of extra gaps= 1 total=65570 # 1p1mA.262.217 read from T0547.t04.many.frag # found chain 1p1mA in training set T0547 262 :GAKNLKAIN 1p1mA 218 :GLKEVKTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65571 # 1qw9A.262.233 read from T0547.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0547)G262 (1qw9A)T234 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1qw9A)S242 because P (beta_P) conformation "forbidden" or filtered. T0547 263 :AKNLKAI 1qw9A 235 :YDHVDYI Number of specific fragments extracted= 1 number of extra gaps= 2 total=65572 # 2bkxA.262.56 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)A263 (2bkxA)F58 because G (3-10) conformation "forbidden" or filtered. T0547 262 :G 2bkxA 57 :S T0547 264 :KNLKAIN 2bkxA 59 :QNITTVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=65574 # 1es9A.262.164 read from T0547.t04.many.frag # found chain 1es9A in training set T0547 262 :GAKNLKAIN 1es9A 165 :GHPRAHFLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=65575 # 1rqpA.262.33 read from T0547.t04.many.frag # found chain 1rqpA in training set Warning: unaligning (T0547)A263 (1rqpA)C35 because D (zeta) conformation "forbidden" or filtered. T0547 262 :G 1rqpA 34 :I T0547 264 :KNLKAIN 1rqpA 36 :PDVTVVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=65577 # 1fsgA.262.168 read from T0547.t04.many.frag # found chain 1fsgA in training set T0547 262 :GAKNLKAIN 1fsgA 166 :GPKSMRIAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65578 # 1txgA.262.93 read from T0547.t04.many.frag # found chain 1txgA in training set Warning: unaligning (T0547)G262 (1txgA)Y94 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1txgA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1txgA)I100 because E (beta_S) conformation "forbidden" or filtered. T0547 263 :AK 1txgA 95 :LK T0547 266 :LK 1txgA 98 :QY T0547 269 :IN 1txgA 101 :VL Number of specific fragments extracted= 3 number of extra gaps= 3 total=65581 # 1e0tA.262.210 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)H216 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)H216 T0547 262 :GAKN 1e0tA 211 :GGEN T0547 268 :AIN 1e0tA 217 :IIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=65583 # 1f2vA.262.160 read from T0547.t04.many.frag # found chain 1f2vA in template set T0547 262 :GAKNLKAIN 1f2vA 152 :GAPKPAAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65584 # 1yx1A.262.180 read from T0547.t04.many.frag # found chain 1yx1A in training set T0547 262 :GAKNLKAIN 1yx1A 179 :LGRYVGYVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=65585 # 1hi9A.262.163 read from T0547.t04.many.frag # found chain 1hi9A in template set T0547 262 :GAKNLKAIN 1hi9A 164 :LIPNVTTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65586 # 1of8A.262.305 read from T0547.t04.many.frag # found chain 1of8A in training set T0547 262 :GAKNLKAIN 1of8A 306 :GENAITGVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=65587 # 2bfdB.263.248 read from T0547.t04.many.frag # found chain 2bfdB in training set T0547 263 :AKNLKAINL 2bfdB 246 :GVSCEVIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65588 # 1woyA.263.277 read from T0547.t04.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)K264 (1woyA)P279 because P (beta_P) conformation "forbidden" or filtered. T0547 263 :A 1woyA 278 :I T0547 265 :NLKAINL 1woyA 280 :MYRHLNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65590 # 1i1wA.263.119 read from T0547.t04.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)K264 (1i1wA)G121 because T (delta_L) conformation "forbidden" or filtered. T0547 263 :A 1i1wA 120 :K T0547 265 :NLKAINL 1i1wA 122 :KIRAWDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65592 # 1q0uA.263.178 read from T0547.t04.many.frag # found chain 1q0uA in template set T0547 263 :AKNLKAINL 1q0uA 179 :PKDLQMLVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=65593 # 2bogX.263.209 read from T0547.t04.many.frag # found chain 2bogX in training set T0547 263 :AKNLKAINL 2bogX 210 :NPSLRAVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=65594 # 1mj5A.263.259 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)N265 (1mj5A)N262 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1mj5A)T264 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1mj5A)T264 T0547 263 :AK 1mj5A 260 :WP T0547 268 :AINL 1mj5A 265 :EITV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65596 # 1mqoA.263.199 read from T0547.t04.many.frag # found chain 1mqoA in training set Warning: unaligning (T0547)A263 (1mqoA)Y253 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1mqoA 254 :RNINAVVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=65597 # 2ab0A.263.63 read from T0547.t04.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE in next template residue (2ab0A)E66 Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE at template residue (2ab0A)E66 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 T0547 263 :A 2ab0A 64 :D T0547 267 :KAINL 2ab0A 68 :DVIVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=65599 # 1nvmB.263.94 read from T0547.t04.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)N265 (1nvmB)G97 because G (3-10) conformation "forbidden" or filtered. T0547 263 :AK 1nvmB 95 :KP T0547 266 :LKAINL 1nvmB 98 :IRLIDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=65601 # 2fnaA.263.167 read from T0547.t04.many.frag # found chain 2fnaA in template set T0547 263 :AKNLKAINL 2fnaA 167 :LKRIKFIMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65602 # 1qw9A.263.234 read from T0547.t04.many.frag # found chain 1qw9A in training set T0547 263 :AKNLKAINL 1qw9A 235 :YDHVDYISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65603 # 1rjdA.263.118 read from T0547.t04.many.frag # found chain 1rjdA in training set Warning: unaligning (T0547)A263 (1rjdA)F119 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1rjdA)Y124 because E (beta_S) conformation "forbidden" or filtered. T0547 264 :KNLK 1rjdA 120 :PHLA T0547 269 :INL 1rjdA 125 :VDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=65605 # 1vkhA.263.112 read from T0547.t04.many.frag # found chain 1vkhA in template set T0547 263 :AKNLKAINL 1vkhA 101 :LTNINMVGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=65606 # 1z7xW.263.282 read from T0547.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)A263 (1z7xW)K282 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1z7xW 283 :ESLKELSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=65607 # 2etjA.263.109 read from T0547.t04.many.frag # found chain 2etjA in training set T0547 263 :AKNLKAINL 2etjA 98 :SVKPSFVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65608 # 1njrA.263.181 read from T0547.t04.many.frag # found chain 1njrA in template set Warning: unaligning (T0547)N265 (1njrA)D184 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1njrA)I189 because P (beta_P) conformation "forbidden" or filtered. T0547 263 :AK 1njrA 182 :PK T0547 266 :LKAI 1njrA 185 :IDGL T0547 271 :L 1njrA 190 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=65611 # 1rqpA.263.34 read from T0547.t04.many.frag # found chain 1rqpA in training set Warning: unaligning (T0547)A263 (1rqpA)C35 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1rqpA 36 :PDVTVVDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=65612 # 1es9A.263.165 read from T0547.t04.many.frag # found chain 1es9A in training set Warning: unaligning (T0547)A263 (1es9A)H166 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1es9A 167 :PRAHFLDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=65613 # 1xqwA.263.118 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)A268 (1xqwA)G124 because Y (epsilon') conformation "forbidden" or filtered. T0547 263 :AKNLK 1xqwA 119 :QDHLK T0547 269 :INL 1xqwA 125 :LIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65615 # 1fvpA.263.191 read from T0547.t04.many.frag # found chain 1fvpA in template set Warning: unaligning (T0547)A263 (1fvpA)D192 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1fvpA)N193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1fvpA)D196 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1fvpA)D196 T0547 265 :N 1fvpA 194 :T T0547 268 :AINL 1fvpA 197 :FLLC Number of specific fragments extracted= 2 number of extra gaps= 2 total=65617 # 1knwA.263.215 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A263 (1knwA)G216 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1knwA)Q217 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :NLKAINL 1knwA 218 :DLQAISA Number of specific fragments extracted= 1 number of extra gaps= 1 total=65618 # 1bykA.263.195 read from T0547.t04.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)A268 (1bykA)L261 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1bykA)S263 because Y (epsilon') conformation "forbidden" or filtered. T0547 263 :AKNLK 1bykA 256 :IDTLQ T0547 269 :I 1bykA 262 :A T0547 271 :L 1bykA 264 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=65621 # 1txgA.263.94 read from T0547.t04.many.frag # found chain 1txgA in training set T0547 263 :AKNLKAINL 1txgA 95 :LKDQYIVLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65622 # 1i24A.263.144 read from T0547.t04.many.frag # found chain 1i24A in template set T0547 263 :AKNLKAINL 1i24A 135 :GEECHLVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65623 # 1sz2A.263.102 read from T0547.t04.many.frag # found chain 1sz2A in template set Warning: unaligning (T0547)N270 (1sz2A)N99 because P (beta_P) conformation "forbidden" or filtered. T0547 263 :AKNLKAI 1sz2A 92 :FSHLEII T0547 271 :L 1sz2A 100 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=65625 # 1io0A.263.91 read from T0547.t04.many.frag # found chain 1io0A in training set T0547 263 :AKNLKAINL 1io0A 251 :NNTLKSLNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65626 # 1y1pA.263.120 read from T0547.t04.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)A263 (1y1pA)T122 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1y1pA 123 :PSVKRFVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=65627 # 1p1mA.263.218 read from T0547.t04.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)N265 (1p1mA)E221 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1p1mA)K223 because P (beta_P) conformation "forbidden" or filtered. T0547 263 :AK 1p1mA 219 :LK T0547 266 :L 1p1mA 222 :V T0547 268 :AINL 1p1mA 224 :TIAA Number of specific fragments extracted= 3 number of extra gaps= 2 total=65630 # 1hd2A.263.66 read from T0547.t04.many.frag # found chain 1hd2A in training set T0547 263 :AKNLKAINL 1hd2A 67 :VQVVACLSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65631 # 1t1vA.263.31 read from T0547.t04.many.frag # found chain 1t1vA in training set Warning: unaligning (T0547)A263 (1t1vA)R32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1t1vA)I33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1t1vA)Q34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 (1t1vA)Y35 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :KAINL 1t1vA 36 :QLVDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=65632 # 1woyA.264.278 read from T0547.t04.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)N265 (1woyA)M280 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1woyA)N285 because D (zeta) conformation "forbidden" or filtered. T0547 264 :K 1woyA 279 :P T0547 266 :LKAI 1woyA 281 :YRHL T0547 271 :LG 1woyA 286 :VG Number of specific fragments extracted= 3 number of extra gaps= 2 total=65635 # 1knwA.264.216 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K264 (1knwA)Q217 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1knwA)D218 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINLG 1knwA 219 :LQAISAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=65636 # 1fobA.264.125 read from T0547.t04.many.frag # found chain 1fobA in training set T0547 264 :KNLKAINLG 1fobA 126 :IDIEIISIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65637 # 2bfdB.264.249 read from T0547.t04.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)K264 (2bfdB)V247 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :NLKAINLG 2bfdB 248 :SCEVIDLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=65638 # 2ab0A.264.64 read from T0547.t04.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE in next template residue (2ab0A)E66 Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE at template residue (2ab0A)E66 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 T0547 267 :KAINLG 2ab0A 68 :DVIVLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=65639 # 1xqwA.264.119 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)A268 (1xqwA)G124 because Y (epsilon') conformation "forbidden" or filtered. T0547 264 :KNLK 1xqwA 120 :DHLK T0547 269 :INLG 1xqwA 125 :LIVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=65641 # 1nrzA.264.96 read from T0547.t04.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)K264 (1nrzA)V98 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NLKAINLG 1nrzA 99 :QIATLNIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=65642 # 7odcA.264.226 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 264 :KNLKAINLG 7odcA 227 :FSMHLLDIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65643 # 1nvmB.264.95 read from T0547.t04.many.frag # found chain 1nvmB in training set T0547 264 :KNLKAINLG 1nvmB 96 :PGIRLIDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65644 # 1i1wA.264.120 read from T0547.t04.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)K264 (1i1wA)G121 because T (delta_L) conformation "forbidden" or filtered. T0547 265 :NLKAINLG 1i1wA 122 :KIRAWDVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=65645 # 1mj5A.264.260 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1mj5A)T264 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1mj5A)T264 T0547 264 :KN 1mj5A 261 :PN T0547 268 :AINLG 1mj5A 265 :EITVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=65647 # 1q0uA.264.179 read from T0547.t04.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)G272 (1q0uA)S188 because E (beta_S) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1q0uA 180 :KDLQMLVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=65648 # 1z7xW.264.283 read from T0547.t04.many.frag # found chain 1z7xW in template set T0547 264 :KNLKAINLG 1z7xW 283 :ESLKELSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65649 # 1txgA.264.95 read from T0547.t04.many.frag # found chain 1txgA in training set T0547 264 :KNLKAINLG 1txgA 96 :KDQYIVLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65650 # 1mqoA.264.200 read from T0547.t04.many.frag # found chain 1mqoA in training set T0547 264 :KNLKAINLG 1mqoA 254 :RNINAVVPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65651 # 1m5wA.264.206 read from T0547.t04.many.frag # found chain 1m5wA in template set T0547 264 :KNLKAINLG 1m5wA 207 :PEMHELNIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65652 # 1es9A.264.166 read from T0547.t04.many.frag # found chain 1es9A in training set Warning: unaligning (T0547)G272 (1es9A)D175 because P (beta_P) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1es9A 167 :PRAHFLDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=65653 # 2bogX.264.210 read from T0547.t04.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)G272 (2bogX)T219 because G (3-10) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 2bogX 211 :PSLRAVID Number of specific fragments extracted= 1 number of extra gaps= 1 total=65654 # 2fnaA.264.168 read from T0547.t04.many.frag # found chain 2fnaA in template set Warning: unaligning (T0547)N265 (2fnaA)R169 because G (3-10) conformation "forbidden" or filtered. T0547 264 :K 2fnaA 168 :K T0547 266 :LKAINLG 2fnaA 170 :IKFIMSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=65656 # 1t1vA.264.32 read from T0547.t04.many.frag # found chain 1t1vA in training set Warning: unaligning (T0547)L266 (1t1vA)Y35 because Y (epsilon') conformation "forbidden" or filtered. T0547 264 :KN 1t1vA 33 :IQ T0547 267 :KAINLG 1t1vA 36 :QLVDIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=65658 # 1l5oA.264.107 read from T0547.t04.many.frag # found chain 1l5oA in training set T0547 264 :KNLKAINLG 1l5oA 108 :AKVHVIDVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65659 # 2etjA.264.110 read from T0547.t04.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)G272 (2etjA)D107 because P (beta_P) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 2etjA 99 :VKPSFVLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=65660 # 1dc1A.264.272 read from T0547.t04.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)G272 (1dc1A)G281 because E (beta_S) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1dc1A 273 :LSPKTIFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=65661 # 1rjdA.264.119 read from T0547.t04.many.frag # found chain 1rjdA in training set Warning: unaligning (T0547)K267 (1rjdA)A123 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1rjdA)D128 because Y (epsilon') conformation "forbidden" or filtered. T0547 264 :KNL 1rjdA 120 :PHL T0547 268 :AINL 1rjdA 124 :YVDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=65663 # 1rqpA.264.35 read from T0547.t04.many.frag # found chain 1rqpA in training set Warning: unaligning (T0547)N265 (1rqpA)D37 because G (3-10) conformation "forbidden" or filtered. T0547 264 :K 1rqpA 36 :P T0547 266 :LKAINLG 1rqpA 38 :VTVVDVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=65665 # 1vkhA.264.113 read from T0547.t04.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)N265 (1vkhA)N103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1vkhA)S110 because S (epsilon) conformation "forbidden" or filtered. T0547 264 :K 1vkhA 102 :T T0547 266 :LKAINL 1vkhA 104 :INMVGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=65667 # 1y1pA.264.121 read from T0547.t04.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G272 (1y1pA)T131 because N (gamma') conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1y1pA 123 :PSVKRFVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=65668 # 1bykA.264.196 read from T0547.t04.many.frag # found chain 1bykA in template set T0547 264 :KNLKAINLG 1bykA 257 :DTLQLASVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65669 # 1yhtA.264.172 read from T0547.t04.many.frag # found chain 1yhtA in template set T0547 264 :KNLKAINLG 1yhtA 173 :DTSQHFHIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65670 # 1qw9A.264.235 read from T0547.t04.many.frag # found chain 1qw9A in training set T0547 264 :KNLKAINLG 1qw9A 236 :DHVDYISLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=65671 # 7odcA.265.227 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G272 (7odcA)G235 because S (epsilon) conformation "forbidden" or filtered. T0547 265 :NLKAINL 7odcA 228 :SMHLLDI T0547 273 :G 7odcA 236 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=65673 # 1woyA.265.279 read from T0547.t04.many.frag # found chain 1woyA in template set T0547 265 :NLKAINLGG 1woyA 280 :MYRHLNVGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65674 # 1knwA.265.217 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K267 (1knwA)Q220 because G (3-10) conformation "forbidden" or filtered. T0547 265 :NL 1knwA 218 :DL T0547 268 :AINLGG 1knwA 221 :AISAGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=65676 # 1fobA.265.126 read from T0547.t04.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)N270 (1fobA)S132 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NLKAI 1fobA 127 :DIEII T0547 271 :LGG 1fobA 133 :IGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=65678 # 1nrzA.265.97 read from T0547.t04.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)G272 (1nrzA)G106 because G (3-10) conformation "forbidden" or filtered. T0547 265 :NLKAINL 1nrzA 99 :QIATLNI T0547 273 :G 1nrzA 107 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=65680 # 2ab0A.265.65 read from T0547.t04.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE at template residue (2ab0A)E66 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 Warning: unaligning (T0547)G272 (2ab0A)P73 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINL 2ab0A 68 :DVIVL T0547 273 :G 2ab0A 74 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=65682 # 1txgA.265.96 read from T0547.t04.many.frag # found chain 1txgA in training set T0547 265 :NLKAINLGG 1txgA 97 :DQYIVLISK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65683 # 1nvmB.265.96 read from T0547.t04.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)N265 (1nvmB)G97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1nvmB)T104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1nvmB)P105 because G (3-10) conformation "forbidden" or filtered. T0547 266 :LKAINL 1nvmB 98 :IRLIDL Number of specific fragments extracted= 1 number of extra gaps= 2 total=65684 # 1l5oA.265.108 read from T0547.t04.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)G273 (1l5oA)I117 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NLKAINLG 1l5oA 109 :KVHVIDVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=65685 # 1mj5A.265.261 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1mj5A)T264 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1mj5A)T264 Warning: unaligning (T0547)G272 (1mj5A)A269 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :N 1mj5A 262 :N T0547 268 :AINL 1mj5A 265 :EITV T0547 273 :G 1mj5A 270 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=65688 # 1xqwA.265.120 read from T0547.t04.many.frag # found chain 1xqwA in template set T0547 265 :NLKAINLGG 1xqwA 121 :HLKGLIVSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65689 # 1es9A.265.167 read from T0547.t04.many.frag # found chain 1es9A in training set Warning: unaligning (T0547)G273 (1es9A)P176 because G (3-10) conformation "forbidden" or filtered. T0547 265 :NLKAINLG 1es9A 168 :RAHFLDAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=65690 # 1zz1A.265.256 read from T0547.t04.many.frag # found chain 1zz1A in training set T0547 265 :NLKAINLGG 1zz1A 257 :RPQLIIVGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65691 # 1dc1A.265.273 read from T0547.t04.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)K267 (1dc1A)K276 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1dc1A)T277 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1dc1A)G281 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :NL 1dc1A 274 :SP T0547 269 :INL 1dc1A 278 :IFI T0547 273 :G 1dc1A 282 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=65694 # 1qj4A.265.31 read from T0547.t04.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)A268 (1qj4A)A35 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)I269 because of BadResidue code BAD_PEPTIDE in next template residue (1qj4A)D37 Warning: unaligning (T0547)N270 because of BadResidue code BAD_PEPTIDE at template residue (1qj4A)D37 Warning: unaligning (T0547)G272 (1qj4A)A39 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NLK 1qj4A 32 :KVT T0547 271 :L 1qj4A 38 :L T0547 273 :G 1qj4A 40 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=65697 # 2bfdB.265.250 read from T0547.t04.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)A268 (2bfdB)V251 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :NLK 2bfdB 248 :SCE T0547 269 :INLGG 2bfdB 252 :IDLRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=65699 # 1q0uA.265.180 read from T0547.t04.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)G272 (1q0uA)S188 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :NLKAINL 1q0uA 181 :DLQMLVF T0547 273 :G 1q0uA 189 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=65701 # 1m5wA.265.207 read from T0547.t04.many.frag # found chain 1m5wA in template set T0547 265 :NLKAINLGG 1m5wA 208 :EMHELNIGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=65702 # 1oi2A.265.135 read from T0547.t04.many.frag # found chain 1oi2A in training set Warning: unaligning (T0547)N265 (1oi2A)K136 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1oi2A)T138 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1oi2A)T139 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1oi2A)V141 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :L 1oi2A 137 :V T0547 269 :I 1oi2A 140 :V T0547 271 :LGG 1oi2A 142 :IDD Number of specific fragments extracted= 3 number of extra gaps= 3 total=65705 # 2etjA.265.111 read from T0547.t04.many.frag # found chain 2etjA in training set T0547 265 :NLKAINLGG 2etjA 100 :KPSFVLVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65706 # 1yhtA.265.173 read from T0547.t04.many.frag # found chain 1yhtA in template set T0547 265 :NLKAINLGG 1yhtA 174 :TSQHFHIGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65707 # 2tpsA.265.171 read from T0547.t04.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)N265 (2tpsA)S180 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (2tpsA)G185 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAI 2tpsA 181 :IPIV T0547 271 :LGG 2tpsA 186 :IGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=65709 # 1t1vA.265.33 read from T0547.t04.many.frag # found chain 1t1vA in training set Warning: unaligning (T0547)L266 (1t1vA)Y35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1t1vA)Q36 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :N 1t1vA 34 :Q T0547 268 :AINLGG 1t1vA 37 :LVDISQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=65711 # 1i1wA.265.121 read from T0547.t04.many.frag # found chain 1i1wA in training set T0547 265 :NLKAINLGG 1i1wA 122 :KIRAWDVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=65712 # 2fnaA.265.169 read from T0547.t04.many.frag # found chain 2fnaA in template set T0547 265 :NLKAINLGG 2fnaA 169 :RIKFIMSGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65713 # 1rqpA.265.36 read from T0547.t04.many.frag # found chain 1rqpA in training set Warning: unaligning (T0547)K267 (1rqpA)T39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1rqpA)C44 because Y (epsilon') conformation "forbidden" or filtered. T0547 265 :NL 1rqpA 37 :DV T0547 268 :AINL 1rqpA 40 :VVDV T0547 273 :G 1rqpA 45 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=65716 # 1z7xW.265.284 read from T0547.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)N270 (1z7xW)S289 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1z7xW)A291 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NLKAI 1z7xW 284 :SLKEL T0547 271 :L 1z7xW 290 :L T0547 273 :G 1z7xW 292 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=65719 # 1bykA.265.197 read from T0547.t04.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)K267 (1bykA)Q260 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1bykA)S263 because Y (epsilon') conformation "forbidden" or filtered. T0547 265 :NL 1bykA 258 :TL T0547 268 :AI 1bykA 261 :LA T0547 271 :LGG 1bykA 264 :VGN Number of specific fragments extracted= 3 number of extra gaps= 2 total=65722 # 1i24A.265.146 read from T0547.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)K267 (1i24A)H139 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1i24A)T145 because Y (epsilon') conformation "forbidden" or filtered. T0547 265 :NL 1i24A 137 :EC T0547 268 :AINLG 1i24A 140 :LVKLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=65724 # 2bzgA.265.131 read from T0547.t04.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)G272 (2bzgA)R152 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :NLKAINL 2bzgA 145 :KFDMIWD T0547 273 :G 2bzgA 153 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=65726 # 7odcA.266.228 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G273 (7odcA)G236 because Y (epsilon') conformation "forbidden" or filtered. T0547 266 :LKAINLG 7odcA 229 :MHLLDIG T0547 274 :G 7odcA 237 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=65728 # 1knwA.266.218 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L266 (1knwA)L219 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1knwA)S223 because E (beta_S) conformation "forbidden" or filtered. T0547 267 :KAI 1knwA 220 :QAI T0547 271 :LGGG 1knwA 224 :AGGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=65730 # 1woyA.266.280 read from T0547.t04.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)A268 (1woyA)H283 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LK 1woyA 281 :YR T0547 269 :INLGGG 1woyA 284 :LNVGGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=65732 # 1fobA.266.127 read from T0547.t04.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)A268 (1fobA)I130 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1fobA)G134 because S (epsilon) conformation "forbidden" or filtered. T0547 266 :LK 1fobA 128 :IE T0547 269 :INL 1fobA 131 :ISI T0547 273 :GG 1fobA 135 :NE Number of specific fragments extracted= 3 number of extra gaps= 2 total=65735 # 1nrzA.266.98 read from T0547.t04.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)G272 (1nrzA)G106 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1nrzA)G107 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LKAINL 1nrzA 100 :IATLNI T0547 274 :G 1nrzA 108 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=65737 # 1xqwA.266.121 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)A268 (1xqwA)G124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1xqwA)S128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1xqwA)G130 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LK 1xqwA 122 :LK T0547 269 :INL 1xqwA 125 :LIV T0547 273 :G 1xqwA 129 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=65740 # 2ab0A.266.66 read from T0547.t04.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 Warning: unaligning (T0547)G272 (2ab0A)P73 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINL 2ab0A 68 :DVIVL T0547 273 :GG 2ab0A 74 :GG Number of specific fragments extracted= 2 number of extra gaps= 2 total=65742 # 1txgA.266.97 read from T0547.t04.many.frag # found chain 1txgA in training set T0547 266 :LKAINLGGG 1txgA 98 :QYIVLISKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65743 # 1mj5A.266.262 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1mj5A)T264 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1mj5A)T264 Warning: unaligning (T0547)G272 (1mj5A)A269 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AINL 1mj5A 265 :EITV T0547 273 :GG 1mj5A 270 :GA Number of specific fragments extracted= 2 number of extra gaps= 2 total=65745 # 1nvmB.266.97 read from T0547.t04.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)G272 (1nvmB)T104 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINL 1nvmB 98 :IRLIDL T0547 273 :GG 1nvmB 105 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=65747 # 1zz1A.266.257 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G273 (1zz1A)S265 because N (gamma') conformation "forbidden" or filtered. T0547 266 :LKAINLG 1zz1A 258 :PQLIIVG T0547 274 :G 1zz1A 266 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=65749 # 1es9A.266.168 read from T0547.t04.many.frag # found chain 1es9A in training set T0547 266 :LKAINLGGG 1es9A 169 :AHFLDADPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65750 # 1l5oA.266.109 read from T0547.t04.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)G274 (1l5oA)D118 because N (gamma') conformation "forbidden" or filtered. T0547 266 :LKAINLGG 1l5oA 110 :VHVIDVGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=65751 # 1dc1A.266.274 read from T0547.t04.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)G272 (1dc1A)G281 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LKAINL 1dc1A 275 :PKTIFI T0547 273 :GG 1dc1A 282 :AA Number of specific fragments extracted= 2 number of extra gaps= 1 total=65753 # 2bzgA.266.132 read from T0547.t04.many.frag # found chain 2bzgA in template set T0547 266 :LKAINLGGG 2bzgA 146 :FDMIWDRGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65754 # 1oi2A.266.136 read from T0547.t04.many.frag # found chain 1oi2A in training set Warning: unaligning (T0547)G272 (1oi2A)D143 because D (zeta) conformation "forbidden" or filtered. T0547 266 :LKAINL 1oi2A 137 :VTTVVI T0547 273 :GG 1oi2A 144 :DD Number of specific fragments extracted= 2 number of extra gaps= 1 total=65756 # 1kicA.266.169 read from T0547.t04.many.frag # found chain 1kicA in training set Warning: unaligning (T0547)A268 (1kicA)E160 because Y (epsilon') conformation "forbidden" or filtered. T0547 266 :LK 1kicA 158 :VE T0547 269 :INLGGG 1kicA 161 :CVIMGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=65758 # 1zwxA.266.186 read from T0547.t04.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)K267 (1zwxA)E222 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :L 1zwxA 221 :D T0547 268 :AINLGGG 1zwxA 223 :IIFIGGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=65760 # 1yhtA.266.174 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)G272 (1yhtA)G181 because S (epsilon) conformation "forbidden" or filtered. T0547 266 :LKAINL 1yhtA 175 :SQHFHI T0547 273 :GG 1yhtA 182 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=65762 # 1ei9A.266.106 read from T0547.t04.many.frag # found chain 1ei9A in template set Warning: unaligning (T0547)G274 (1ei9A)Q142 because D (zeta) conformation "forbidden" or filtered. T0547 266 :LKAINLGG 1ei9A 134 :VNLISVGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=65763 # 1t4bA.266.91 read from T0547.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)G272 (1t4bA)A98 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINL 1t4bA 92 :GYWIDA T0547 273 :GG 1t4bA 99 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=65765 # 1xrjA.266.19 read from T0547.t04.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)L266 because first residue in template chain is (1xrjA)P20 Warning: unaligning (T0547)G274 (1xrjA)G28 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINLGG 1xrjA 21 :FLIGVSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=65766 # 1z7xW.266.285 read from T0547.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)G272 (1z7xW)A291 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1z7xW)N293 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINL 1z7xW 285 :LKELSL T0547 273 :G 1z7xW 292 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=65768 # 2etjA.266.112 read from T0547.t04.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)G272 (2etjA)D107 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINL 2etjA 101 :PSFVLV T0547 273 :GG 2etjA 108 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=65770 # 2etvA.266.176 read from T0547.t04.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)G272 (2etvA)G195 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (2etvA)I197 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINL 2etvA 189 :SPTVYV T0547 273 :G 2etvA 196 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=65772 # 2fnaA.266.170 read from T0547.t04.many.frag # found chain 2fnaA in template set Warning: unaligning (T0547)G272 (2fnaA)G176 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LKAINL 2fnaA 170 :IKFIMS T0547 273 :GG 2fnaA 177 :SE Number of specific fragments extracted= 2 number of extra gaps= 1 total=65774 # 2tpsA.266.172 read from T0547.t04.many.frag # found chain 2tpsA in training set T0547 266 :LKAINLGGG 2tpsA 181 :IPIVGIGGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65775 # 1i24A.266.147 read from T0547.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)N270 (1i24A)K142 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LKAI 1i24A 138 :CHLV T0547 271 :LGGG 1i24A 143 :LGTM Number of specific fragments extracted= 2 number of extra gaps= 1 total=65777 # 1m5wA.266.208 read from T0547.t04.many.frag # found chain 1m5wA in template set T0547 266 :LKAINLGGG 1m5wA 209 :MHELNIGHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65778 # 1eswA.266.288 read from T0547.t04.many.frag # found chain 1eswA in template set Warning: unaligning (T0547)K267 (1eswA)V290 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L271 (1eswA)H294 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1eswA)G297 because H (helix) conformation "forbidden" or filtered. T0547 266 :L 1eswA 289 :L T0547 268 :AIN 1eswA 291 :RID T0547 272 :GG 1eswA 295 :FR Number of specific fragments extracted= 3 number of extra gaps= 3 total=65781 # 7odcA.267.229 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G272 (7odcA)G235 because S (epsilon) conformation "forbidden" or filtered. T0547 267 :KAINL 7odcA 230 :HLLDI T0547 273 :GGL 7odcA 236 :GGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=65783 # 1knwA.267.219 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A268 (1knwA)A221 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :K 1knwA 220 :Q T0547 269 :INLGGGL 1knwA 222 :ISAGGGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=65785 # 1woyA.267.281 read from T0547.t04.many.frag # found chain 1woyA in template set T0547 267 :KAINLGGGL 1woyA 282 :RHLNVGGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65786 # 1fobA.267.128 read from T0547.t04.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)N270 (1fobA)S132 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAI 1fobA 129 :EII T0547 271 :LGGGL 1fobA 133 :IGNEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=65788 # 1nrzA.267.99 read from T0547.t04.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)G272 (1nrzA)G106 because G (3-10) conformation "forbidden" or filtered. T0547 267 :KAINL 1nrzA 101 :ATLNI T0547 273 :GGL 1nrzA 107 :GMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=65790 # 1xqwA.267.122 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)A268 (1xqwA)G124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1xqwA)G130 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :K 1xqwA 123 :K T0547 269 :INLGG 1xqwA 125 :LIVSG T0547 275 :L 1xqwA 131 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=65793 # 1zz1A.267.258 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)N270 (1zz1A)I262 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1zz1A)G264 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1zz1A)S265 because N (gamma') conformation "forbidden" or filtered. T0547 267 :KAI 1zz1A 259 :QLI T0547 271 :L 1zz1A 263 :V T0547 274 :GL 1zz1A 266 :GF Number of specific fragments extracted= 3 number of extra gaps= 2 total=65796 # 1kicA.267.170 read from T0547.t04.many.frag # found chain 1kicA in training set Warning: unaligning (T0547)A268 (1kicA)E160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1kicA)G165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1kicA)G166 because S (epsilon) conformation "forbidden" or filtered. T0547 267 :K 1kicA 159 :E T0547 269 :INLG 1kicA 161 :CVIM T0547 275 :L 1kicA 167 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=65799 # 1zwxA.267.187 read from T0547.t04.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)N270 (1zwxA)F225 because E (beta_S) conformation "forbidden" or filtered. T0547 267 :KAI 1zwxA 222 :EII T0547 271 :LGGGL 1zwxA 226 :IGGDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=65801 # 1txgA.267.98 read from T0547.t04.many.frag # found chain 1txgA in training set Warning: unaligning (T0547)G273 (1txgA)K105 because D (zeta) conformation "forbidden" or filtered. T0547 267 :KAINLG 1txgA 99 :YIVLIS T0547 274 :GL 1txgA 106 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=65803 # 2ab0A.267.67 read from T0547.t04.many.frag # found chain 2ab0A in training set T0547 267 :KAINLGGGL 2ab0A 68 :DVIVLPGGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65804 # 1mj5A.267.263 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1mj5A)T264 T0547 268 :AINLGGGL 1mj5A 265 :EITVAGAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=65805 # 2bzgA.267.133 read from T0547.t04.many.frag # found chain 2bzgA in template set T0547 267 :KAINLGGGL 2bzgA 147 :DMIWDRGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65806 # 1dc1A.267.275 read from T0547.t04.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)K267 (1dc1A)K276 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AINLGGGL 1dc1A 277 :TIFIGAAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=65807 # 1nvmB.267.98 read from T0547.t04.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)L275 (1nvmB)A107 because L (left) conformation "forbidden" or filtered. T0547 267 :KAINLGGG 1nvmB 99 :RLIDLTPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=65808 # 1jykA.267.26 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)G272 (1jykA)A12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1jykA)G14 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINL 1jykA 7 :KAIIL T0547 273 :G 1jykA 13 :A T0547 275 :L 1jykA 15 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=65811 # 1t4bA.267.92 read from T0547.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)K267 (1t4bA)Y93 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AINLGGGL 1t4bA 94 :WIDAASSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=65812 # 1uuyA.267.72 read from T0547.t04.many.frag # found chain 1uuyA in training set T0547 267 :KAINLGGGL 1uuyA 73 :DLILTLGGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=65813 # 2etvA.267.177 read from T0547.t04.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)K267 (2etvA)P190 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (2etvA)Y193 because E (beta_S) conformation "forbidden" or filtered. T0547 268 :AI 2etvA 191 :TV T0547 271 :LGGGL 2etvA 194 :VGGIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=65815 # 1uxy.267.39 read from T0547.t04.many.frag # found chain 1uxy in training set T0547 267 :KAINLGGGL 1uxy 42 :PVLILGEGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65816 # 1xrjA.267.20 read from T0547.t04.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)G272 (1xrjA)S26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1xrjA)G28 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINL 1xrjA 21 :FLIGV T0547 273 :G 1xrjA 27 :G T0547 275 :L 1xrjA 29 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=65819 # 1ei9A.267.107 read from T0547.t04.many.frag # found chain 1ei9A in template set Warning: unaligning (T0547)G273 (1ei9A)G141 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINLG 1ei9A 135 :NLISVG T0547 274 :GL 1ei9A 142 :QH Number of specific fragments extracted= 2 number of extra gaps= 1 total=65821 # 1yhtA.267.175 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)L275 (1yhtA)E184 because L (left) conformation "forbidden" or filtered. T0547 267 :KAINLGGG 1yhtA 176 :QHFHIGGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=65822 # 1l5oA.267.110 read from T0547.t04.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)G272 (1l5oA)G116 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1l5oA)A119 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :KAINL 1l5oA 111 :HVIDV T0547 273 :GG 1l5oA 117 :ID Number of specific fragments extracted= 2 number of extra gaps= 2 total=65824 # 1lnsA.267.458 read from T0547.t04.many.frag # found chain 1lnsA in template set Warning: unaligning (T0547)G272 (1lnsA)H464 because E (beta_S) conformation "forbidden" or filtered. T0547 267 :KAINL 1lnsA 459 :DVLIV T0547 273 :GGL 1lnsA 465 :GLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=65826 # 1eswA.267.289 read from T0547.t04.many.frag # found chain 1eswA in template set Warning: unaligning (T0547)L271 (1eswA)H294 because L (left) conformation "forbidden" or filtered. T0547 267 :KAIN 1eswA 290 :VRID T0547 272 :GGGL 1eswA 295 :FRGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=65828 # 1e4fT.267.330 read from T0547.t04.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)K267 (1e4fT)G331 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1e4fT)V332 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L271 (1e4fT)T335 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1e4fT)G336 because S (epsilon) conformation "forbidden" or filtered. T0547 269 :IN 1e4fT 333 :VL T0547 273 :GGL 1e4fT 337 :GGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=65830 # 1es9A.267.169 read from T0547.t04.many.frag # found chain 1es9A in training set Warning: unaligning (T0547)G272 (1es9A)D175 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINL 1es9A 170 :HFLDA T0547 273 :GGL 1es9A 176 :PGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=65832 # 1nnwA.267.34 read from T0547.t04.many.frag # found chain 1nnwA in template set Warning: unaligning (T0547)A268 (1nnwA)K36 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE in next template residue (1nnwA)N42 Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE at template residue (1nnwA)N42 T0547 267 :K 1nnwA 35 :E T0547 269 :INLG 1nnwA 37 :YYIL T0547 275 :L 1nnwA 43 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=65835 # 1oi2A.267.137 read from T0547.t04.many.frag # found chain 1oi2A in training set Warning: unaligning (T0547)K267 (1oi2A)T138 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1oi2A)T139 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1oi2A)D143 because D (zeta) conformation "forbidden" or filtered. T0547 269 :INL 1oi2A 140 :VVI T0547 273 :GGL 1oi2A 144 :DDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=65837 # 1knwA.268.220 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 268 :AINLGGGLA 1knwA 221 :AISAGGGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65838 # 7odcA.268.230 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A276 (7odcA)P239 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AINLGGGL 7odcA 231 :LLDIGGGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=65839 # 1xqwA.268.123 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)G274 (1xqwA)G130 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1xqwA)L131 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1xqwA)S132 because G (3-10) conformation "forbidden" or filtered. T0547 268 :AINLGG 1xqwA 124 :GLIVSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=65840 # 1woyA.268.282 read from T0547.t04.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)G273 (1woyA)G288 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AINLG 1woyA 283 :HLNVG T0547 274 :GLA 1woyA 289 :FLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=65842 # 1zwxA.268.188 read from T0547.t04.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G274 (1zwxA)D229 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. T0547 268 :AINLGG 1zwxA 223 :IIFIGG T0547 275 :L 1zwxA 230 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=65844 # 1zz1A.268.259 read from T0547.t04.many.frag # found chain 1zz1A in training set T0547 268 :AINLGGGLA 1zz1A 260 :LIIVGSGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=65845 # 1nrzA.268.100 read from T0547.t04.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)G272 (1nrzA)G106 because G (3-10) conformation "forbidden" or filtered. T0547 268 :AINL 1nrzA 102 :TLNI T0547 273 :GGLA 1nrzA 107 :GMAW Number of specific fragments extracted= 2 number of extra gaps= 1 total=65847 # 1kicA.268.171 read from T0547.t04.many.frag # found chain 1kicA in training set Warning: unaligning (T0547)A268 (1kicA)E160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1kicA)M164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1kicA)G165 because Y (epsilon') conformation "forbidden" or filtered. T0547 269 :INL 1kicA 161 :CVI T0547 274 :GLA 1kicA 166 :GAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=65849 # 1fobA.268.129 read from T0547.t04.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)N270 (1fobA)S132 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AI 1fobA 130 :II T0547 271 :LGGGLA 1fobA 133 :IGNEIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=65851 # 1e4fT.268.331 read from T0547.t04.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)N270 (1e4fT)L334 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L271 (1e4fT)T335 because Y (epsilon') conformation "forbidden" or filtered. T0547 268 :AI 1e4fT 332 :VV T0547 272 :GGGLA 1e4fT 336 :GGGAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=65853 # 1uuyA.268.73 read from T0547.t04.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)G272 (1uuyA)L78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. T0547 268 :AINL 1uuyA 74 :LILT T0547 274 :GLA 1uuyA 80 :GTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=65855 # 1mj5A.268.264 read from T0547.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)N270 (1mj5A)T267 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1mj5A)A269 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1mj5A)G270 because Y (epsilon') conformation "forbidden" or filtered. T0547 268 :AI 1mj5A 265 :EI T0547 271 :L 1mj5A 268 :V T0547 274 :GLA 1mj5A 271 :AHF Number of specific fragments extracted= 3 number of extra gaps= 2 total=65858 # 2ab0A.268.68 read from T0547.t04.many.frag # found chain 2ab0A in training set T0547 268 :AINLGGGLA 2ab0A 69 :VIVLPGGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=65859 # 1jykA.268.27 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)G272 (1jykA)A12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1jykA)G16 because L (left) conformation "forbidden" or filtered. T0547 268 :AINL 1jykA 8 :AIIL T0547 273 :GGL 1jykA 13 :AGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=65861 # 1xrjA.268.21 read from T0547.t04.many.frag # found chain 1xrjA in template set T0547 268 :AINLGGGLA 1xrjA 22 :LIGVSGGTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=65862 # 1lnsA.268.459 read from T0547.t04.many.frag # found chain 1lnsA in template set Warning: unaligning (T0547)G273 (1lnsA)G465 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AINLG 1lnsA 460 :VLIVH T0547 274 :GLA 1lnsA 466 :LQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=65864 # 1uxy.268.40 read from T0547.t04.many.frag # found chain 1uxy in training set Warning: unaligning (T0547)G273 (1uxy)E48 because G (3-10) conformation "forbidden" or filtered. T0547 268 :AINLG 1uxy 43 :VLILG T0547 274 :GLA 1uxy 49 :GSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=65866 # 2etvA.268.178 read from T0547.t04.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)G274 (2etvA)I197 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)G201 T0547 268 :AINLGG 2etvA 191 :TVYVGG T0547 275 :L 2etvA 198 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=65868 # 1rtqA.268.90 read from T0547.t04.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)N270 (1rtqA)V93 because E (beta_S) conformation "forbidden" or filtered. T0547 268 :AI 1rtqA 91 :WI T0547 271 :LGGGLA 1rtqA 94 :IGGHLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=65870 # 1txgA.268.99 read from T0547.t04.many.frag # found chain 1txgA in training set Warning: unaligning (T0547)G272 (1txgA)S104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1txgA)K105 because D (zeta) conformation "forbidden" or filtered. T0547 268 :AINL 1txgA 100 :IVLI T0547 274 :GLA 1txgA 106 :GLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=65872 1pcxA expands to /projects/compbio/data/pdb/1pcx.pdb.gz 1pcxA:# 1pcxA.268.325 read from T0547.t04.many.frag # adding 1pcxA to template set # found chain 1pcxA in template set Warning: unaligning (T0547)A276 (1pcxA)P450 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AINLGGGL 1pcxA 442 :IIVVSGTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=65873 # 1dc1A.268.276 read from T0547.t04.many.frag # found chain 1dc1A in training set T0547 268 :AINLGGGLA 1dc1A 277 :TIFIGAAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=65874 # 1y7tA.268.82 read from T0547.t04.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)G274 (1y7tA)A88 because Y (epsilon') conformation "forbidden" or filtered. T0547 268 :AINLGG 1y7tA 82 :YALLVG T0547 275 :LA 1y7tA 89 :AP Number of specific fragments extracted= 2 number of extra gaps= 1 total=65876 # 1ei9A.268.108 read from T0547.t04.many.frag # found chain 1ei9A in template set Warning: unaligning (T0547)G274 (1ei9A)Q142 because D (zeta) conformation "forbidden" or filtered. T0547 268 :AINLGG 1ei9A 136 :LISVGG T0547 275 :LA 1ei9A 143 :HQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=65878 # 1yhtA.268.176 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)N270 (1yhtA)H179 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1yhtA)D183 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AI 1yhtA 177 :HF T0547 271 :LGG 1yhtA 180 :IGG T0547 275 :LA 1yhtA 184 :EF Number of specific fragments extracted= 3 number of extra gaps= 2 total=65881 # 1svsA.268.34 read from T0547.t04.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)G273 (1svsA)A41 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1svsA)G42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1svsA)E43 because T (delta_L) conformation "forbidden" or filtered. T0547 268 :AINLG 1svsA 36 :LLLLG T0547 276 :A 1svsA 44 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=65883 # 1thfD.268.197 read from T0547.t04.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)G274 (1thfD)A204 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1thfD)K206 because Y (epsilon') conformation "forbidden" or filtered. T0547 268 :AINLGG 1thfD 198 :IIASGG T0547 275 :L 1thfD 205 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=65885 # 2tpsA.268.174 read from T0547.t04.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)N270 (2tpsA)G185 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AI 2tpsA 183 :IV T0547 271 :LGGGLA 2tpsA 186 :IGGITI Number of specific fragments extracted= 2 number of extra gaps= 1 total=65887 # 1woqA.268.216 read from T0547.t04.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)G274 (1woqA)G223 because H (helix) conformation "forbidden" or filtered. T0547 268 :AINLGG 1woqA 217 :LFIVGG T0547 275 :LA 1woqA 224 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=65889 # 1vflA.268.177 read from T0547.t04.many.frag # found chain 1vflA in training set Warning: unaligning (T0547)G273 (1vflA)G181 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1vflA)D182 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AINLG 1vflA 176 :AIDLA T0547 275 :LA 1vflA 183 :ET Number of specific fragments extracted= 2 number of extra gaps= 1 total=65891 # 1knwA.269.221 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N270 (1knwA)S223 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :I 1knwA 222 :I T0547 271 :LGGGLAV 1knwA 224 :AGGGLSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65893 # 7odcA.269.231 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A276 (7odcA)P239 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :INLGGGL 7odcA 232 :LDIGGGF T0547 277 :V 7odcA 240 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=65895 # 1zwxA.269.189 read from T0547.t04.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G272 (1zwxA)G227 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :INL 1zwxA 224 :IFI T0547 273 :GGLAV 1zwxA 228 :GDLNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65897 # 1xqwA.269.124 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)G274 (1xqwA)G130 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :INLGG 1xqwA 125 :LIVSG T0547 275 :LAV 1xqwA 131 :LSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=65899 # 1zz1A.269.260 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G273 (1zz1A)S265 because N (gamma') conformation "forbidden" or filtered. T0547 269 :INLG 1zz1A 261 :IIVG T0547 274 :GLAV 1zz1A 266 :GFDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=65901 # 1woyA.269.283 read from T0547.t04.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)G272 (1woyA)G287 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1woyA)G288 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :INL 1woyA 284 :LNV T0547 274 :GLAV 1woyA 289 :FLLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=65903 # 1e4fT.269.332 read from T0547.t04.many.frag # found chain 1e4fT in template set T0547 269 :INLGGGLAV 1e4fT 333 :VLTGGGAKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65904 # 1kicA.269.172 read from T0547.t04.many.frag # found chain 1kicA in training set Warning: unaligning (T0547)G272 (1kicA)M164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1kicA)G166 because S (epsilon) conformation "forbidden" or filtered. T0547 269 :INL 1kicA 161 :CVI T0547 273 :G 1kicA 165 :G T0547 275 :LAV 1kicA 167 :AVD Number of specific fragments extracted= 3 number of extra gaps= 2 total=65907 # 1nrzA.269.101 read from T0547.t04.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)G273 (1nrzA)G107 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :INLG 1nrzA 103 :LNIG T0547 274 :GLAV 1nrzA 108 :MAWR Number of specific fragments extracted= 2 number of extra gaps= 1 total=65909 # 1xrjA.269.22 read from T0547.t04.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)G272 (1xrjA)S26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1xrjA)G27 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1xrjA)G28 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :INL 1xrjA 23 :IGV T0547 275 :LAV 1xrjA 29 :TAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=65911 # 1jykA.269.28 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)G272 (1jykA)A12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1jykA)G14 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1jykA)G16 because L (left) conformation "forbidden" or filtered. T0547 269 :INL 1jykA 9 :IIL T0547 273 :G 1jykA 13 :A T0547 275 :L 1jykA 15 :L T0547 277 :V 1jykA 17 :T Number of specific fragments extracted= 4 number of extra gaps= 3 total=65915 # 1fobA.269.130 read from T0547.t04.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)V277 (1fobA)A139 because G (3-10) conformation "forbidden" or filtered. T0547 269 :INLGGGLA 1fobA 131 :ISIGNEIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=65916 # 1rtqA.269.91 read from T0547.t04.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)G274 (1rtqA)H97 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :INLGG 1rtqA 92 :IVIGG T0547 275 :LAV 1rtqA 98 :LDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=65918 # 1uuyA.269.74 read from T0547.t04.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)G273 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. T0547 269 :INLG 1uuyA 75 :ILTL T0547 274 :GLAV 1uuyA 80 :GTGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=65920 # 1pcxA.269.326 read from T0547.t04.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)N270 (1pcxA)V444 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1pcxA)S446 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1pcxA)G447 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1pcxA)T448 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :I 1pcxA 443 :I T0547 271 :L 1pcxA 445 :V T0547 275 :LAV 1pcxA 449 :LPN Number of specific fragments extracted= 3 number of extra gaps= 2 total=65923 # 1woqA.269.217 read from T0547.t04.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)G272 (1woqA)G221 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :INL 1woqA 218 :FIV T0547 273 :GGLAV 1woqA 222 :GGISK Number of specific fragments extracted= 2 number of extra gaps= 1 total=65925 # 1zzmA.269.175 read from T0547.t04.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)N270 (1zzmA)G177 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :I 1zzmA 176 :I T0547 271 :LGGGLAV 1zzmA 178 :VGGTITY Number of specific fragments extracted= 2 number of extra gaps= 1 total=65927 # 1mj5A.269.265 read from T0547.t04.many.frag # found chain 1mj5A in training set T0547 269 :INLGGGLAV 1mj5A 266 :ITVAGAHFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=65928 # 1pmmA.269.242 read from T0547.t04.many.frag # found chain 1pmmA in template set Warning: unaligning (T0547)G273 (1pmmA)G247 because H (helix) conformation "forbidden" or filtered. T0547 269 :INLG 1pmmA 243 :DAAS T0547 274 :GLAV 1pmmA 248 :GFLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=65930 # 1m5wA.269.188 read from T0547.t04.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)N270 (1m5wA)N190 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1m5wA)H193 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1m5wA)T196 because Y (epsilon') conformation "forbidden" or filtered. T0547 269 :I 1m5wA 189 :V T0547 271 :LG 1m5wA 191 :AG T0547 274 :GL 1m5wA 194 :GL T0547 277 :V 1m5wA 197 :Y Number of specific fragments extracted= 4 number of extra gaps= 3 total=65934 # 2ab0A.269.69 read from T0547.t04.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)G272 (2ab0A)P73 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :INL 2ab0A 70 :IVL T0547 273 :GGLAV 2ab0A 74 :GGIKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=65936 # 1yhtA.269.177 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)L275 (1yhtA)E184 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1yhtA)G186 because L (left) conformation "forbidden" or filtered. T0547 269 :INLGGG 1yhtA 178 :FHIGGD T0547 276 :A 1yhtA 185 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=65938 # 2blnA.269.100 read from T0547.t04.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)G272 (2blnA)H104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (2blnA)G105 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (2blnA)S106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (2blnA)P109 because C (cis) conformation "forbidden" or filtered. T0547 269 :INL 2blnA 101 :FNL T0547 275 :LA 2blnA 107 :LL Number of specific fragments extracted= 2 number of extra gaps= 2 total=65940 # 1ei9A.269.109 read from T0547.t04.many.frag # found chain 1ei9A in template set Warning: unaligning (T0547)G274 (1ei9A)Q142 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1ei9A)G145 because S (epsilon) conformation "forbidden" or filtered. T0547 269 :INLGG 1ei9A 137 :ISVGG T0547 275 :LA 1ei9A 143 :HQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=65942 # 1q6zA.269.269 read from T0547.t04.many.frag # found chain 1q6zA in training set Warning: unaligning (T0547)G272 (1q6zA)I273 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 because of BadResidue code BAD_PEPTIDE in next template residue (1q6zA)F278 Warning: unaligning (T0547)V277 because of BadResidue code BAD_PEPTIDE at template residue (1q6zA)F278 T0547 269 :INL 1q6zA 270 :VLV T0547 273 :GGL 1q6zA 274 :GAP Number of specific fragments extracted= 2 number of extra gaps= 2 total=65944 # 1uxoA.269.94 read from T0547.t04.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)G272 (1uxoA)V96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1uxoA)F99 because Y (epsilon') conformation "forbidden" or filtered. T0547 269 :INL 1uxoA 93 :IIL T0547 273 :GG 1uxoA 97 :SG T0547 276 :AV 1uxoA 100 :AK Number of specific fragments extracted= 3 number of extra gaps= 2 total=65947 # 1uxy.269.41 read from T0547.t04.many.frag # found chain 1uxy in training set T0547 269 :INLGGGLAV 1uxy 44 :LILGEGSNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=65948 # 1lnsA.269.460 read from T0547.t04.many.frag # found chain 1lnsA in template set Warning: unaligning (T0547)G272 (1lnsA)H464 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1lnsA)G465 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1lnsA)L466 because G (3-10) conformation "forbidden" or filtered. T0547 269 :INL 1lnsA 461 :LIV T0547 275 :LAV 1lnsA 467 :QDW Number of specific fragments extracted= 2 number of extra gaps= 1 total=65950 # 2f02A.269.132 read from T0547.t04.many.frag # found chain 2f02A in template set Warning: unaligning (T0547)N270 (2f02A)T132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (2f02A)S134 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (2f02A)S136 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :I 2f02A 131 :V T0547 271 :L 2f02A 133 :I T0547 273 :G 2f02A 135 :G T0547 275 :LAV 2f02A 137 :LAK Number of specific fragments extracted= 4 number of extra gaps= 3 total=65954 # 2etvA.269.179 read from T0547.t04.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)G201 T0547 269 :INLGGGL 2etvA 192 :VYVGGIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=65955 # 1knwA.270.222 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G273 (1knwA)G226 because Y (epsilon') conformation "forbidden" or filtered. T0547 270 :NLG 1knwA 223 :SAG T0547 274 :GLAVE 1knwA 227 :GLSVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=65957 # 1zwxA.270.190 read from T0547.t04.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G272 (1zwxA)G227 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1zwxA)D229 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. T0547 270 :NL 1zwxA 225 :FI T0547 273 :G 1zwxA 228 :G T0547 275 :L 1zwxA 230 :L T0547 277 :VE 1zwxA 232 :VN Number of specific fragments extracted= 4 number of extra gaps= 3 total=65961 # 7odcA.270.232 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E278 (7odcA)S241 because E (beta_S) conformation "forbidden" or filtered. T0547 270 :NLGGGLAV 7odcA 233 :DIGGGFPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=65962 # 1zz1A.270.261 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G273 (1zz1A)S265 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1zz1A)S270 because P (beta_P) conformation "forbidden" or filtered. T0547 270 :NLG 1zz1A 262 :IVG T0547 274 :GLAV 1zz1A 266 :GFDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=65964 # 1xqwA.270.125 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)G272 (1xqwA)S128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1xqwA)G130 because P (beta_P) conformation "forbidden" or filtered. T0547 270 :NL 1xqwA 126 :IV T0547 273 :G 1xqwA 129 :G T0547 275 :LAVE 1xqwA 131 :LSSV Number of specific fragments extracted= 3 number of extra gaps= 2 total=65967 # 1e4fT.270.333 read from T0547.t04.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)L271 (1e4fT)T335 because Y (epsilon') conformation "forbidden" or filtered. T0547 270 :N 1e4fT 334 :L T0547 272 :GGGLAVE 1e4fT 336 :GGGAKIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=65969 # 1woyA.270.284 read from T0547.t04.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)G272 (1woyA)G287 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1woyA)F289 because P (beta_P) conformation "forbidden" or filtered. T0547 270 :NL 1woyA 285 :NV T0547 273 :G 1woyA 288 :G T0547 275 :LAVE 1woyA 290 :LLGP Number of specific fragments extracted= 3 number of extra gaps= 2 total=65972 # 1rtqA.270.92 read from T0547.t04.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)E278 (1rtqA)T101 because Y (epsilon') conformation "forbidden" or filtered. T0547 270 :NLGGGLAV 1rtqA 93 :VIGGHLDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=65973 # 1jykA.270.29 read from T0547.t04.many.frag # found chain 1jykA in training set T0547 270 :NLGGGLAVE 1jykA 10 :ILAAGLGTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=65974 # 1m5wA.270.189 read from T0547.t04.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)A276 (1m5wA)T196 because Y (epsilon') conformation "forbidden" or filtered. T0547 270 :NLGGGL 1m5wA 190 :NAGHGL T0547 277 :VE 1m5wA 197 :YH Number of specific fragments extracted= 2 number of extra gaps= 1 total=65976 # 1pcxA.270.327 read from T0547.t04.many.frag # found chain 1pcxA in template set T0547 270 :NLGGGLAVE 1pcxA 444 :VVSGTLPNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=65977 # 1woqA.270.218 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 270 :NLGGGLAVE 1woqA 219 :IVGGGISKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=65978 # 1zzmA.270.176 read from T0547.t04.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)G273 (1zzmA)G180 because H (helix) conformation "forbidden" or filtered. T0547 270 :NLG 1zzmA 177 :GVG T0547 274 :GLAVE 1zzmA 181 :TITYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=65980 # 1kicA.270.173 read from T0547.t04.many.frag # found chain 1kicA in training set Warning: unaligning (T0547)G272 (1kicA)M164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1kicA)G165 because Y (epsilon') conformation "forbidden" or filtered. T0547 270 :NL 1kicA 162 :VI T0547 274 :GLAVE 1kicA 166 :GAVDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=65982 # 1xrjA.270.23 read from T0547.t04.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)N270 (1xrjA)G24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1xrjA)S26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1xrjA)A30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1xrjA)G32 because T (delta_L) conformation "forbidden" or filtered. T0547 271 :L 1xrjA 25 :V T0547 273 :GGL 1xrjA 27 :GGT T0547 277 :V 1xrjA 31 :S Number of specific fragments extracted= 3 number of extra gaps= 4 total=65985 # 1ezwA.270.59 read from T0547.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)G272 (1ezwA)G62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE in next template residue (1ezwA)I65 Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE at template residue (1ezwA)I65 T0547 270 :NL 1ezwA 60 :KL T0547 273 :G 1ezwA 63 :P T0547 276 :AVE 1ezwA 66 :TNP Number of specific fragments extracted= 3 number of extra gaps= 2 total=65988 # 1pmmA.270.243 read from T0547.t04.many.frag # found chain 1pmmA in template set T0547 270 :NLGGGLAVE 1pmmA 244 :AASGGFLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=65989 # 1eu1A.270.348 read from T0547.t04.many.frag # found chain 1eu1A in training set T0547 270 :NLGGGLAVE 1eu1A 349 :LPGGGFGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=65990 # 2blnA.270.101 read from T0547.t04.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)V277 (2blnA)P109 because C (cis) conformation "forbidden" or filtered. T0547 270 :NLGGGLA 2blnA 102 :NLHGSLL T0547 278 :E 2blnA 110 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=65992 # 1uuyA.270.75 read from T0547.t04.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)A276 (1uuyA)G82 because P (beta_P) conformation "forbidden" or filtered. T0547 270 :NLGGGL 1uuyA 76 :LTLGGT T0547 277 :VE 1uuyA 83 :FT Number of specific fragments extracted= 2 number of extra gaps= 1 total=65994 # 1uxoA.270.95 read from T0547.t04.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)L275 (1uxoA)F99 because Y (epsilon') conformation "forbidden" or filtered. T0547 270 :NLGGG 1uxoA 94 :ILVSG T0547 276 :AVE 1uxoA 100 :AKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=65996 # 2a40B.270.163 read from T0547.t04.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)G272 (2a40B)M166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (2a40B)N170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (2a40B)D172 because Y (epsilon') conformation "forbidden" or filtered. T0547 270 :NL 2a40B 164 :ML T0547 273 :GGL 2a40B 167 :GDF T0547 277 :V 2a40B 171 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=65999 # 1z90A.270.253 read from T0547.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)G273 (1z90A)G257 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1z90A)L260 because P (beta_P) conformation "forbidden" or filtered. T0547 270 :NLG 1z90A 254 :DVK T0547 274 :GL 1z90A 258 :GT T0547 277 :VE 1z90A 261 :IS Number of specific fragments extracted= 3 number of extra gaps= 2 total=66002 # 1l6rA.270.66 read from T0547.t04.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)L271 (1l6rA)E65 because L (left) conformation "forbidden" or filtered. T0547 270 :N 1l6rA 64 :G T0547 272 :GGGLAVE 1l6rA 66 :NGGIMFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=66004 # 1jovA.270.67 read from T0547.t04.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)G272 (1jovA)R70 because N (gamma') conformation "forbidden" or filtered. T0547 270 :NL 1jovA 68 :AI T0547 273 :GGLAVE 1jovA 71 :GGVPIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=66006 # 1fobA.270.131 read from T0547.t04.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)E278 (1fobA)G140 because S (epsilon) conformation "forbidden" or filtered. T0547 270 :NLGGGLAV 1fobA 132 :SIGNEIRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=66007 # 1uxy.270.42 read from T0547.t04.many.frag # found chain 1uxy in training set Warning: unaligning (T0547)G272 (1uxy)G47 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1uxy)E48 because G (3-10) conformation "forbidden" or filtered. T0547 270 :NL 1uxy 45 :IL T0547 274 :GLAVE 1uxy 49 :GSNVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66009 # 1nrzA.270.102 read from T0547.t04.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)G272 (1nrzA)G106 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1nrzA)M108 because D (zeta) conformation "forbidden" or filtered. T0547 270 :NL 1nrzA 104 :NI T0547 273 :G 1nrzA 107 :G T0547 275 :LAVE 1nrzA 109 :AWRP Number of specific fragments extracted= 3 number of extra gaps= 2 total=66012 # 1q6zA.270.270 read from T0547.t04.many.frag # found chain 1q6zA in training set Warning: unaligning (T0547)G272 (1q6zA)I273 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 because of BadResidue code BAD_PEPTIDE in next template residue (1q6zA)F278 Warning: unaligning (T0547)V277 because of BadResidue code BAD_PEPTIDE at template residue (1q6zA)F278 T0547 270 :NL 1q6zA 271 :LV T0547 273 :GGL 1q6zA 274 :GAP T0547 278 :E 1q6zA 279 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=66015 # 1fcdA.270.100 read from T0547.t04.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)G272 (1fcdA)A103 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1fcdA)G105 because S (epsilon) conformation "forbidden" or filtered. T0547 270 :NL 1fcdA 101 :VV T0547 273 :G 1fcdA 104 :P T0547 275 :LAVE 1fcdA 106 :IELI Number of specific fragments extracted= 3 number of extra gaps= 2 total=66018 # 1knwA.271.223 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 271 :LGGGLAVEY 1knwA 224 :AGGGLSVPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=66019 # 1zwxA.271.191 read from T0547.t04.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G274 (1zwxA)D229 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. T0547 271 :LGG 1zwxA 226 :IGG T0547 275 :L 1zwxA 230 :L T0547 277 :VEY 1zwxA 232 :VNY Number of specific fragments extracted= 3 number of extra gaps= 2 total=66022 # 1zz1A.271.262 read from T0547.t04.many.frag # found chain 1zz1A in training set T0547 271 :LGGGLAVEY 1zz1A 263 :VGSGFDASM Number of specific fragments extracted= 1 number of extra gaps= 0 total=66023 # 7odcA.271.233 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 271 :LGGGLAVEY 7odcA 234 :IGGGFPGSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66024 # 1e4fT.271.334 read from T0547.t04.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)G272 (1e4fT)G336 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1e4fT)G338 because H (helix) conformation "forbidden" or filtered. T0547 271 :L 1e4fT 335 :T T0547 273 :G 1e4fT 337 :G T0547 275 :LAVEY 1e4fT 339 :AKIPR Number of specific fragments extracted= 3 number of extra gaps= 2 total=66027 # 1eu1A.271.349 read from T0547.t04.many.frag # found chain 1eu1A in training set T0547 271 :LGGGLAVEY 1eu1A 350 :PGGGFGLSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=66028 # 1jykA.271.30 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)A276 (1jykA)G16 because L (left) conformation "forbidden" or filtered. T0547 271 :LGGGL 1jykA 11 :LAAGL T0547 277 :VEY 1jykA 17 :TRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66030 # 1xqwA.271.126 read from T0547.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)G274 (1xqwA)G130 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1xqwA)L131 because Y (epsilon') conformation "forbidden" or filtered. T0547 271 :LGG 1xqwA 127 :VSG T0547 276 :AVEY 1xqwA 132 :SSVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=66032 # 2a40B.271.164 read from T0547.t04.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)G272 (2a40B)M166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (2a40B)D172 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (2a40B)C173 because S (epsilon) conformation "forbidden" or filtered. T0547 271 :L 2a40B 165 :L T0547 273 :GGLAV 2a40B 167 :GDFNA Number of specific fragments extracted= 2 number of extra gaps= 2 total=66034 # 1ezwA.271.60 read from T0547.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE in next template residue (1ezwA)I65 Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE at template residue (1ezwA)I65 T0547 271 :LGG 1ezwA 61 :LGP T0547 276 :AVEY 1ezwA 66 :TNPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=66036 # 1m5wA.271.190 read from T0547.t04.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)L271 (1m5wA)A191 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1m5wA)T196 because Y (epsilon') conformation "forbidden" or filtered. T0547 272 :GGGL 1m5wA 192 :GHGL T0547 277 :VEY 1m5wA 197 :YHN Number of specific fragments extracted= 2 number of extra gaps= 2 total=66038 # 1z90A.271.254 read from T0547.t04.many.frag # found chain 1z90A in template set T0547 271 :LGGGLAVEY 1z90A 255 :VKGGTLISY Number of specific fragments extracted= 1 number of extra gaps= 0 total=66039 # 1iu8A.271.157 read from T0547.t04.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)G272 (1iu8A)A159 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1iu8A)G160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1iu8A)F161 because E (beta_S) conformation "forbidden" or filtered. T0547 271 :L 1iu8A 158 :I T0547 275 :LAVEY 1iu8A 162 :IHVPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=66041 # 2cw6A.271.232 read from T0547.t04.many.frag # found chain 2cw6A in template set Warning: unaligning (T0547)G274 (2cw6A)L263 because P (beta_P) conformation "forbidden" or filtered. T0547 271 :LGG 2cw6A 260 :VAG T0547 275 :LAVEY 2cw6A 264 :GGCPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=66043 # 1l6rA.271.67 read from T0547.t04.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)L271 (1l6rA)E65 because L (left) conformation "forbidden" or filtered. T0547 272 :GGGLAVEY 1l6rA 66 :NGGIMFDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=66044 # 1jovA.271.68 read from T0547.t04.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)G272 (1jovA)R70 because N (gamma') conformation "forbidden" or filtered. T0547 271 :L 1jovA 69 :I T0547 273 :GGLAVEY 1jovA 71 :GGVPICY Number of specific fragments extracted= 2 number of extra gaps= 1 total=66046 # 1rtqA.271.93 read from T0547.t04.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)G274 (1rtqA)H97 because E (beta_S) conformation "forbidden" or filtered. T0547 271 :LGG 1rtqA 94 :IGG T0547 275 :LAVEY 1rtqA 98 :LDSTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=66048 # 1uxoA.271.96 read from T0547.t04.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)G272 (1uxoA)V96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1uxoA)F99 because Y (epsilon') conformation "forbidden" or filtered. T0547 271 :L 1uxoA 95 :L T0547 273 :GG 1uxoA 97 :SG T0547 276 :AVEY 1uxoA 100 :AKSL Number of specific fragments extracted= 3 number of extra gaps= 2 total=66051 # 1hq0A.271.119 read from T0547.t04.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)L271 (1hq0A)G839 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1hq0A)K844 because E (beta_S) conformation "forbidden" or filtered. T0547 272 :GGGL 1hq0A 840 :ANGI T0547 277 :VEY 1hq0A 845 :IAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=66053 # 1x38A.271.425 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)L275 (1x38A)W430 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1x38A)I432 because T (delta_L) conformation "forbidden" or filtered. T0547 271 :LGGG 1x38A 426 :QCGG T0547 276 :A 1x38A 431 :T T0547 278 :EY 1x38A 433 :EW Number of specific fragments extracted= 3 number of extra gaps= 2 total=66056 # 1w8kA.271.81 read from T0547.t04.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)G273 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w8kA)G124 Warning: unaligning (T0547)E278 because of BadResidue code BAD_PEPTIDE in next template residue (1w8kA)N130 Warning: unaligning (T0547)Y279 because of BadResidue code BAD_PEPTIDE at template residue (1w8kA)N130 T0547 274 :GLAV 1w8kA 125 :GFAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=66057 # 1vjoA.271.198 read from T0547.t04.many.frag # found chain 1vjoA in training set Warning: unaligning (T0547)G274 (1vjoA)G190 because G (3-10) conformation "forbidden" or filtered. T0547 271 :LGG 1vjoA 187 :SLG T0547 275 :LAVEY 1vjoA 191 :VPIFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66059 # 1m5wA.271.188 read from T0547.t04.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)L275 (1m5wA)H193 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1m5wA)T196 because Y (epsilon') conformation "forbidden" or filtered. T0547 271 :LGGG 1m5wA 189 :VNAG T0547 276 :AV 1m5wA 194 :GL T0547 279 :Y 1m5wA 197 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=66062 # 1pmmA.271.244 read from T0547.t04.many.frag # found chain 1pmmA in template set T0547 271 :LGGGLAVEY 1pmmA 245 :ASGGFLAPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=66063 # 1fcdA.271.101 read from T0547.t04.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)G274 (1fcdA)G105 because S (epsilon) conformation "forbidden" or filtered. T0547 271 :LGG 1fcdA 102 :VAP T0547 275 :LAVEY 1fcdA 106 :IELIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=66065 # 1vkpA.271.161 read from T0547.t04.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)G274 (1vkpA)S165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1vkpA)H167 because E (beta_S) conformation "forbidden" or filtered. T0547 271 :LGG 1vkpA 162 :EGG T0547 275 :L 1vkpA 166 :I T0547 277 :VEY 1vkpA 168 :VDG Number of specific fragments extracted= 3 number of extra gaps= 2 total=66068 # 1woqA.271.219 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 271 :LGGGLAVEY 1woqA 220 :VGGGISKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66069 # 1zr6A.271.193 read from T0547.t04.many.frag # found chain 1zr6A in training set Warning: unaligning (T0547)G272 (1zr6A)G189 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1zr6A)G190 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1zr6A)A193 because Y (epsilon') conformation "forbidden" or filtered. T0547 271 :L 1zr6A 188 :G T0547 274 :GL 1zr6A 191 :GF T0547 277 :VEY 1zr6A 194 :IVS Number of specific fragments extracted= 3 number of extra gaps= 2 total=66072 # 1uxy.271.43 read from T0547.t04.many.frag # found chain 1uxy in training set T0547 271 :LGGGLAVEY 1uxy 46 :LGEGSNVLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=66073 # 1pcxA.271.328 read from T0547.t04.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)G274 (1pcxA)T448 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1pcxA)L452 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (1pcxA)G453 because S (epsilon) conformation "forbidden" or filtered. T0547 271 :LGG 1pcxA 445 :VSG T0547 275 :LAV 1pcxA 449 :LPN Number of specific fragments extracted= 2 number of extra gaps= 2 total=66075 # 1knwA.272.224 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 272 :GGGLAVEYS 1knwA 225 :GGGLSVPYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=66076 # 1zwxA.272.192 read from T0547.t04.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G272 (1zwxA)G227 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1zwxA)D229 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. T0547 273 :G 1zwxA 228 :G T0547 275 :L 1zwxA 230 :L T0547 277 :VEYS 1zwxA 232 :VNYG Number of specific fragments extracted= 3 number of extra gaps= 3 total=66079 # 1zz1A.272.263 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G272 (1zz1A)G264 because N (gamma') conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 1zz1A 265 :SGFDASML Number of specific fragments extracted= 1 number of extra gaps= 1 total=66080 # 1hq0A.272.120 read from T0547.t04.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)G273 (1hq0A)N841 because E (beta_S) conformation "forbidden" or filtered. T0547 272 :G 1hq0A 840 :A T0547 274 :GLAVEYS 1hq0A 842 :GIKIALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66082 # 2a40B.272.165 read from T0547.t04.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)A276 (2a40B)N170 because L (left) conformation "forbidden" or filtered. T0547 272 :GGGL 2a40B 166 :MGDF T0547 277 :VEYS 2a40B 171 :ADCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=66084 # 1eu1A.272.350 read from T0547.t04.many.frag # found chain 1eu1A in training set T0547 272 :GGGLAVEYS 1eu1A 351 :GGGFGLSYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=66085 # 1jykA.272.31 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)G272 (1jykA)A12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1jykA)G16 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1jykA)R20 because P (beta_P) conformation "forbidden" or filtered. T0547 273 :GGL 1jykA 13 :AGL T0547 277 :VEY 1jykA 17 :TRL Number of specific fragments extracted= 2 number of extra gaps= 3 total=66087 # 1wpoA.272.15 read from T0547.t04.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)V277 (1wpoA)A21 because Y (epsilon') conformation "forbidden" or filtered. T0547 272 :GGGLA 1wpoA 16 :VGGFL T0547 278 :EYS 1wpoA 22 :RYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=66089 # 1z90A.272.255 read from T0547.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)G272 (1z90A)K256 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1z90A)G257 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1z90A)L260 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1z90A)E264 because L (left) conformation "forbidden" or filtered. T0547 274 :GL 1z90A 258 :GT T0547 277 :VEY 1z90A 261 :ISY Number of specific fragments extracted= 2 number of extra gaps= 3 total=66091 # 1x38A.272.426 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)L275 (1x38A)W430 because L (left) conformation "forbidden" or filtered. T0547 272 :GGG 1x38A 427 :CGG T0547 276 :AVEYS 1x38A 431 :TIEWQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=66093 # 7odcA.272.234 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 272 :GGGLAVEYS 7odcA 235 :GGGFPGSED Number of specific fragments extracted= 1 number of extra gaps= 0 total=66094 # 1jovA.272.69 read from T0547.t04.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)G272 (1jovA)R70 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1jovA)P74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1jovA)C76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1jovA)P78 because C (cis) conformation "forbidden" or filtered. T0547 273 :GGL 1jovA 71 :GGV T0547 277 :V 1jovA 75 :I T0547 279 :Y 1jovA 77 :Y Number of specific fragments extracted= 3 number of extra gaps= 4 total=66097 # 2cw6A.272.233 read from T0547.t04.many.frag # found chain 2cw6A in template set Warning: unaligning (T0547)G274 (2cw6A)L263 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (2cw6A)G264 because S (epsilon) conformation "forbidden" or filtered. T0547 272 :GG 2cw6A 261 :AG T0547 276 :AVEYS 2cw6A 265 :GCPYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=66099 # 1m5wA.272.189 read from T0547.t04.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)G273 (1m5wA)A191 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1m5wA)G194 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1m5wA)T196 because Y (epsilon') conformation "forbidden" or filtered. T0547 272 :G 1m5wA 190 :N T0547 274 :GL 1m5wA 192 :GH T0547 277 :V 1m5wA 195 :L T0547 279 :YS 1m5wA 197 :YH Number of specific fragments extracted= 4 number of extra gaps= 3 total=66103 # 1iu8A.272.158 read from T0547.t04.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)G272 (1iu8A)A159 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1iu8A)F161 because E (beta_S) conformation "forbidden" or filtered. T0547 273 :G 1iu8A 160 :G T0547 275 :LAVEYS 1iu8A 162 :IHVPYT Number of specific fragments extracted= 2 number of extra gaps= 2 total=66105 # 1ezwA.272.61 read from T0547.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)G273 (1ezwA)P63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE in next template residue (1ezwA)I65 Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE at template residue (1ezwA)I65 T0547 272 :G 1ezwA 62 :G T0547 276 :AVEYS 1ezwA 66 :TNPYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=66107 # 1fcdA.272.102 read from T0547.t04.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)G272 (1fcdA)A103 because D (zeta) conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 1fcdA 104 :PGIELIYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=66108 # 1y8aA.272.144 read from T0547.t04.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)A276 (1y8aA)E127 because E (beta_S) conformation "forbidden" or filtered. T0547 272 :GGGL 1y8aA 123 :LHGT T0547 277 :VEYS 1y8aA 128 :VDFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=66110 # 1ug6A.272.292 read from T0547.t04.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)G272 (1ug6A)T293 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1ug6A)G294 because P (beta_P) conformation "forbidden" or filtered. T0547 274 :GLAVEYS 1ug6A 295 :TLPVRYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=66111 # 1g6sA.272.134 read from T0547.t04.many.frag # found chain 1g6sA in training set Warning: unaligning (T0547)G273 (1g6sA)G136 because G (3-10) conformation "forbidden" or filtered. T0547 272 :G 1g6sA 135 :L T0547 274 :GLAVEYS 1g6sA 137 :GAKITYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66113 # 1e4fT.272.335 read from T0547.t04.many.frag # found chain 1e4fT in template set T0547 272 :GGGLAVEYS 1e4fT 336 :GGGAKIPRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66114 # 2bvcA.272.230 read from T0547.t04.many.frag # found chain 2bvcA in template set Warning: unaligning (T0547)L275 (2bvcA)A226 because Y (epsilon') conformation "forbidden" or filtered. T0547 272 :GGG 2bvcA 223 :GGQ T0547 276 :AVEYS 2bvcA 227 :EINYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=66116 # 1vjoA.272.199 read from T0547.t04.many.frag # found chain 1vjoA in training set Warning: unaligning (T0547)G272 (1vjoA)L188 because P (beta_P) conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 1vjoA 189 :GGVPIFLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=66117 # 1vkpA.272.162 read from T0547.t04.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)G274 (1vkpA)S165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1vkpA)H167 because E (beta_S) conformation "forbidden" or filtered. T0547 272 :GG 1vkpA 163 :GG T0547 275 :L 1vkpA 166 :I T0547 277 :VEYS 1vkpA 168 :VDGE Number of specific fragments extracted= 3 number of extra gaps= 2 total=66120 # 1l6rA.272.68 read from T0547.t04.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)G274 (1l6rA)G68 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1l6rA)D72 because P (beta_P) conformation "forbidden" or filtered. T0547 272 :GG 1l6rA 66 :NG T0547 275 :LAV 1l6rA 69 :IMF T0547 279 :YS 1l6rA 73 :ND Number of specific fragments extracted= 3 number of extra gaps= 2 total=66123 # 1uxoA.272.97 read from T0547.t04.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)G272 (1uxoA)V96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1uxoA)F99 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :GG 1uxoA 97 :SG T0547 276 :AVEYS 1uxoA 100 :AKSLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=66125 # 1lfpA.272.136 read from T0547.t04.many.frag # found chain 1lfpA in training set Warning: unaligning (T0547)G273 (1lfpA)G138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1lfpA)Y139 because E (beta_S) conformation "forbidden" or filtered. T0547 272 :G 1lfpA 137 :K T0547 275 :LAVEYS 1lfpA 140 :IEVPAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=66127 # 1w8kA.272.82 read from T0547.t04.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)G273 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w8kA)G124 Warning: unaligning (T0547)E278 because of BadResidue code BAD_PEPTIDE in next template residue (1w8kA)N130 Warning: unaligning (T0547)Y279 because of BadResidue code BAD_PEPTIDE at template residue (1w8kA)N130 Warning: unaligning (T0547)S280 (1w8kA)A131 because S (epsilon) conformation "forbidden" or filtered. T0547 274 :GLAV 1w8kA 125 :GFAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=66128 # 1pjxA.272.173 read from T0547.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0547)E278 (1pjxA)R180 because P (beta_P) conformation "forbidden" or filtered. T0547 272 :GGGLAV 1pjxA 174 :PNGIAV T0547 279 :YS 1pjxA 181 :HM Number of specific fragments extracted= 2 number of extra gaps= 1 total=66130 # 1uxy.272.44 read from T0547.t04.many.frag # found chain 1uxy in training set Warning: unaligning (T0547)G273 (1uxy)E48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1uxy)L53 because D (zeta) conformation "forbidden" or filtered. T0547 272 :G 1uxy 47 :G T0547 274 :GLAV 1uxy 49 :GSNV T0547 279 :YS 1uxy 54 :FL Number of specific fragments extracted= 3 number of extra gaps= 2 total=66133 # 1knwA.273.225 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A276 (1knwA)S229 because P (beta_P) conformation "forbidden" or filtered. T0547 273 :GGL 1knwA 226 :GGL T0547 277 :VEYSQ 1knwA 230 :VPYQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=66135 # 1zwxA.273.193 read from T0547.t04.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G273 (1zwxA)G228 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1zwxA)D229 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1zwxA)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 275 :L 1zwxA 230 :L T0547 277 :VEY 1zwxA 232 :VNY T0547 281 :Q 1zwxA 236 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=66138 # 1hq0A.273.121 read from T0547.t04.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)G274 (1hq0A)G842 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :G 1hq0A 841 :N T0547 275 :LAVEYSQ 1hq0A 843 :IKIALEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66140 # 2a40B.273.166 read from T0547.t04.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)E278 (2a40B)D172 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (2a40B)C173 because S (epsilon) conformation "forbidden" or filtered. T0547 273 :GGLAV 2a40B 167 :GDFNA T0547 280 :SQ 2a40B 174 :SY Number of specific fragments extracted= 2 number of extra gaps= 1 total=66142 # 1z90A.273.256 read from T0547.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)S280 (1z90A)E264 because L (left) conformation "forbidden" or filtered. T0547 273 :GGLAVEY 1z90A 257 :GGTLISY T0547 281 :Q 1z90A 265 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=66144 # 1y8aA.273.145 read from T0547.t04.many.frag # found chain 1y8aA in training set T0547 273 :GGLAVEYSQ 1y8aA 124 :HGTEVDFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=66145 # 1eu1A.273.351 read from T0547.t04.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)G273 (1eu1A)G352 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1eu1A)L356 because G (3-10) conformation "forbidden" or filtered. T0547 274 :GLA 1eu1A 353 :GFG T0547 278 :EYSQ 1eu1A 357 :SYHY Number of specific fragments extracted= 2 number of extra gaps= 2 total=66147 # 1wpoA.273.16 read from T0547.t04.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)G273 (1wpoA)G17 because E (beta_S) conformation "forbidden" or filtered. T0547 274 :GLAVEYSQ 1wpoA 18 :GFLARYDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=66148 # 1jovA.273.70 read from T0547.t04.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)G273 (1jovA)G71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1jovA)P78 because C (cis) conformation "forbidden" or filtered. T0547 274 :GLAVEY 1jovA 72 :GVPICY T0547 281 :Q 1jovA 79 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=66150 # 1ug6A.273.293 read from T0547.t04.many.frag # found chain 1ug6A in training set T0547 273 :GGLAVEYSQ 1ug6A 294 :GTLPVRYLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=66151 # 1fcdA.273.103 read from T0547.t04.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)G274 (1fcdA)G105 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1fcdA)I109 because D (zeta) conformation "forbidden" or filtered. T0547 273 :G 1fcdA 104 :P T0547 275 :LAV 1fcdA 106 :IEL T0547 279 :YSQ 1fcdA 110 :YDK Number of specific fragments extracted= 3 number of extra gaps= 2 total=66154 # 1jykA.273.32 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)Q281 (1jykA)P21 because C (cis) conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 1jykA 13 :AGLGTRLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=66155 # 1iu8A.273.159 read from T0547.t04.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)G273 (1iu8A)G160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1iu8A)P165 because P (beta_P) conformation "forbidden" or filtered. T0547 274 :GLAV 1iu8A 161 :FIHV T0547 279 :YSQ 1iu8A 166 :YTP Number of specific fragments extracted= 2 number of extra gaps= 2 total=66157 # 1x38A.273.427 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)G274 (1x38A)G429 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1x38A)W430 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1x38A)G436 because S (epsilon) conformation "forbidden" or filtered. T0547 273 :G 1x38A 428 :G T0547 276 :AVEYS 1x38A 431 :TIEWQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=66159 # 1g6sA.273.135 read from T0547.t04.many.frag # found chain 1g6sA in training set Warning: unaligning (T0547)E278 (1g6sA)T141 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1g6sA)E144 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :GGLAV 1g6sA 136 :GGAKI T0547 279 :YS 1g6sA 142 :YL Number of specific fragments extracted= 2 number of extra gaps= 2 total=66161 # 1lfpA.273.137 read from T0547.t04.many.frag # found chain 1lfpA in training set T0547 273 :GGLAVEYSQ 1lfpA 138 :GYIEVPAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66162 # 2bvcA.273.231 read from T0547.t04.many.frag # found chain 2bvcA in template set Warning: unaligning (T0547)L275 (2bvcA)A226 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :GG 2bvcA 224 :GQ T0547 276 :AVEYSQ 2bvcA 227 :EINYQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=66164 # 1zz1A.273.264 read from T0547.t04.many.frag # found chain 1zz1A in training set T0547 273 :GGLAVEYSQ 1zz1A 265 :SGFDASMLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66165 # 1ezwA.273.62 read from T0547.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)G274 because of BadResidue code BAD_PEPTIDE in next template residue (1ezwA)I65 Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE at template residue (1ezwA)I65 T0547 273 :G 1ezwA 63 :P T0547 276 :AVEYSQ 1ezwA 66 :TNPYTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=66167 # 2cw6A.273.234 read from T0547.t04.many.frag # found chain 2cw6A in template set Warning: unaligning (T0547)A276 (2cw6A)G265 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :GGL 2cw6A 262 :GLG T0547 277 :VEYSQ 2cw6A 266 :CPYAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=66169 # 1pjxA.273.174 read from T0547.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0547)S280 (1pjxA)M182 because P (beta_P) conformation "forbidden" or filtered. T0547 273 :GGLAVEY 1pjxA 175 :NGIAVRH T0547 281 :Q 1pjxA 183 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=66171 # 1zavA.273.23 read from T0547.t04.many.frag # found chain 1zavA in template set T0547 273 :GGLAVEYSQ 1zavA 23 :LILFADFLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=66172 # 1m5wA.273.190 read from T0547.t04.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)E278 (1m5wA)T196 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :GGLAV 1m5wA 191 :AGHGL T0547 279 :YSQ 1m5wA 197 :YHN Number of specific fragments extracted= 2 number of extra gaps= 1 total=66174 # 1vkpA.273.163 read from T0547.t04.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)Y279 (1vkpA)G170 because T (delta_L) conformation "forbidden" or filtered. T0547 273 :GGLAVE 1vkpA 164 :GSIHVD T0547 280 :SQ 1vkpA 171 :EG Number of specific fragments extracted= 2 number of extra gaps= 1 total=66176 # 1vjoA.273.200 read from T0547.t04.many.frag # found chain 1vjoA in training set T0547 273 :GGLAVEYSQ 1vjoA 189 :GGVPIFLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66177 1c8nA expands to /projects/compbio/data/pdb/1c8n.pdb.gz 1c8nA:# 1c8nA.273.202 read from T0547.t04.many.frag # adding 1c8nA to template set # found chain 1c8nA in template set Warning: unaligning (T0547)G274 (1c8nA)Y204 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :G 1c8nA 203 :I T0547 275 :LAVEYSQ 1c8nA 205 :VDVDVTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=66179 # 1odzA.273.281 read from T0547.t04.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)A276 (1odzA)G322 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :GGL 1odzA 319 :SGI T0547 277 :VEYSQ 1odzA 323 :IRAPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=66181 # 1vhwA.273.91 read from T0547.t04.many.frag # found chain 1vhwA in training set Warning: unaligning (T0547)G274 (1vhwA)S91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1vhwA)C92 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :G 1vhwA 90 :G T0547 276 :AVEYSQ 1vhwA 93 :GAVNEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=66183 # 2bfwA.273.1 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)A276 because first residue in template chain is (2bfwA)G218 T0547 277 :VEYSQ 2bfwA 219 :IDCSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=66184 # 1s99A.273.79 read from T0547.t04.many.frag # found chain 1s99A in training set T0547 273 :GGLAVEYSQ 1s99A 80 :GTFSIGCPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=66185 # 1knwA.274.226 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)F282 (1knwA)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 274 :GLAVEYSQ 1knwA 227 :GLSVPYQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=66186 # 1zwxA.274.194 read from T0547.t04.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G274 (1zwxA)D229 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1zwxA)G235 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1zwxA)T236 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :L 1zwxA 230 :L T0547 277 :VEY 1zwxA 232 :VNY T0547 282 :F 1zwxA 237 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=66189 # 1hq0A.274.122 read from T0547.t04.many.frag # found chain 1hq0A in template set T0547 274 :GLAVEYSQF 1hq0A 842 :GIKIALEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66190 # 1y8aA.274.146 read from T0547.t04.many.frag # found chain 1y8aA in training set T0547 274 :GLAVEYSQF 1y8aA 125 :GTEVDFDSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66191 # 2a40B.274.167 read from T0547.t04.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)G274 (2a40B)D168 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (2a40B)N170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (2a40B)D172 because Y (epsilon') conformation "forbidden" or filtered. T0547 275 :L 2a40B 169 :F T0547 277 :V 2a40B 171 :A T0547 279 :YSQF 2a40B 173 :CSYV Number of specific fragments extracted= 3 number of extra gaps= 3 total=66194 # 1z90A.274.257 read from T0547.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)S280 (1z90A)E264 because L (left) conformation "forbidden" or filtered. T0547 274 :GLAVEY 1z90A 258 :GTLISY T0547 281 :QF 1z90A 265 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=66196 # 1zavA.274.24 read from T0547.t04.many.frag # found chain 1zavA in template set Warning: unaligning (T0547)G274 (1zavA)I24 because E (beta_S) conformation "forbidden" or filtered. T0547 275 :LAVEYSQF 1zavA 25 :LFADFLGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=66197 # 1ug6A.274.294 read from T0547.t04.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)E278 (1ug6A)R299 because E (beta_S) conformation "forbidden" or filtered. T0547 274 :GLAV 1ug6A 295 :TLPV T0547 279 :YSQF 1ug6A 300 :YLPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=66199 # 1jovA.274.71 read from T0547.t04.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)A276 (1jovA)P74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1jovA)P78 because C (cis) conformation "forbidden" or filtered. T0547 274 :GL 1jovA 72 :GV T0547 277 :VEY 1jovA 75 :ICY T0547 281 :QF 1jovA 79 :WF Number of specific fragments extracted= 3 number of extra gaps= 2 total=66202 # 1s99A.274.80 read from T0547.t04.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)Q281 (1s99A)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 274 :GLAVEYS 1s99A 81 :TFSIGCP T0547 282 :F 1s99A 89 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=66204 # 1fcdA.274.104 read from T0547.t04.many.frag # found chain 1fcdA in template set T0547 274 :GLAVEYSQF 1fcdA 105 :GIELIYDKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66205 # 1c8nA.274.203 read from T0547.t04.many.frag # found chain 1c8nA in template set Warning: unaligning (T0547)A276 (1c8nA)D206 because E (beta_S) conformation "forbidden" or filtered. T0547 274 :GL 1c8nA 204 :YV T0547 277 :VEYSQF 1c8nA 207 :VDVTRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=66207 # 1eu1A.274.352 read from T0547.t04.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)A276 (1eu1A)G355 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1eu1A)S361 because L (left) conformation "forbidden" or filtered. T0547 274 :GL 1eu1A 353 :GF T0547 277 :VEYSQ 1eu1A 356 :LSYHY Number of specific fragments extracted= 2 number of extra gaps= 2 total=66209 # 1vhwA.274.92 read from T0547.t04.many.frag # found chain 1vhwA in training set T0547 274 :GLAVEYSQF 1vhwA 91 :SCGAVNEGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66210 # 1wpoA.274.17 read from T0547.t04.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)Y279 (1wpoA)Y23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wpoA)L33 T0547 274 :GLAVE 1wpoA 18 :GFLAR T0547 280 :SQ 1wpoA 24 :DQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=66212 # 1h80A.274.118 read from T0547.t04.many.frag # found chain 1h80A in training set T0547 274 :GLAVEYSQF 1h80A 146 :GFLVDFKDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=66213 # 1lfpA.274.138 read from T0547.t04.many.frag # found chain 1lfpA in training set Warning: unaligning (T0547)F282 (1lfpA)V147 because Y (epsilon') conformation "forbidden" or filtered. T0547 274 :GLAVEYSQ 1lfpA 139 :YIEVPAKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=66214 # 1iu8A.274.160 read from T0547.t04.many.frag # found chain 1iu8A in training set T0547 274 :GLAVEYSQF 1iu8A 161 :FIHVPYTPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66215 # 1g6sA.274.136 read from T0547.t04.many.frag # found chain 1g6sA in training set Warning: unaligning (T0547)Q281 (1g6sA)E144 because Y (epsilon') conformation "forbidden" or filtered. T0547 274 :GLAVEYS 1g6sA 137 :GAKITYL T0547 282 :F 1g6sA 145 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=66217 # 1x38A.274.428 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)G274 (1x38A)G429 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1x38A)W430 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1x38A)T431 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1x38A)I432 because T (delta_L) conformation "forbidden" or filtered. T0547 278 :EYSQF 1x38A 433 :EWQGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=66218 # 1ayoA.274.26 read from T0547.t04.many.frag # found chain 1ayoA in template set Warning: unaligning (T0547)G274 (1ayoA)S29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1ayoA)S33 because E (beta_S) conformation "forbidden" or filtered. T0547 275 :LAV 1ayoA 30 :LSV T0547 279 :YSQF 1ayoA 34 :YIGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=66220 # 1pjxA.274.175 read from T0547.t04.many.frag # found chain 1pjxA in training set T0547 274 :GLAVEYSQF 1pjxA 176 :GIAVRHMND Number of specific fragments extracted= 1 number of extra gaps= 0 total=66221 # 2cvbA.274.70 read from T0547.t04.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)G274 (2cvbA)I71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (2cvbA)Y76 because G (3-10) conformation "forbidden" or filtered. T0547 275 :LAVE 2cvbA 72 :NAND T0547 280 :SQF 2cvbA 77 :EKY Number of specific fragments extracted= 2 number of extra gaps= 2 total=66223 # 1iab.274.111 read from T0547.t04.many.frag # found chain 1iab in training set Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE in next template residue (1iab)T114 Warning: unaligning (T0547)A276 because of BadResidue code BAD_PEPTIDE at template residue (1iab)T114 T0547 274 :G 1iab 112 :Y T0547 277 :VEYSQF 1iab 115 :INYQNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=66225 # 1vjoA.274.201 read from T0547.t04.many.frag # found chain 1vjoA in training set T0547 274 :GLAVEYSQF 1vjoA 190 :GVPIFLDAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=66226 1ctt expands to /projects/compbio/data/pdb/1ctt.pdb.gz 1ctt:Warning: there is no chain 1ctt will retry with 1cttA # 1ctt.274.86 read from T0547.t04.many.frag # adding 1ctt to template set # found chain 1ctt in template set Warning: unaligning (T0547)L275 (1ctt)A88 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1ctt)E91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1ctt)G94 because T (delta_L) conformation "forbidden" or filtered. T0547 274 :G 1ctt 87 :G T0547 276 :AV 1ctt 89 :NM T0547 279 :YS 1ctt 92 :FI T0547 282 :F 1ctt 95 :A Number of specific fragments extracted= 4 number of extra gaps= 3 total=66230 # 1h0hB.274.2 read from T0547.t04.many.frag # found chain 1h0hB in training set T0547 274 :GLAVEYSQF 1h0hB 3 :GFFVDTTRC Number of specific fragments extracted= 1 number of extra gaps= 0 total=66231 # 1odzA.274.282 read from T0547.t04.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)A276 (1odzA)G322 because Y (epsilon') conformation "forbidden" or filtered. T0547 274 :GL 1odzA 320 :GI T0547 277 :VEYSQF 1odzA 323 :IRAPDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=66233 # 1jykA.274.33 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)Q281 (1jykA)P21 because C (cis) conformation "forbidden" or filtered. T0547 274 :GLAVEYS 1jykA 14 :GLGTRLR T0547 282 :F 1jykA 22 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=66235 1s12A expands to /projects/compbio/data/pdb/1s12.pdb.gz 1s12A:# 1s12A.274.50 read from T0547.t04.many.frag # adding 1s12A to template set # found chain 1s12A in template set Warning: unaligning (T0547)A276 (1s12A)K53 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1s12A)E58 because L (left) conformation "forbidden" or filtered. T0547 274 :GL 1s12A 51 :YL T0547 277 :VEYS 1s12A 54 :VKFE T0547 282 :F 1s12A 59 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=66238 # 1knwA.275.227 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 275 :LAVEYSQFK 1knwA 228 :LSVPYQQGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66239 # 1y8aA.275.147 read from T0547.t04.many.frag # found chain 1y8aA in training set T0547 275 :LAVEYSQFK 1y8aA 126 :TEVDFDSIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66240 # 1hq0A.275.123 read from T0547.t04.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)A276 (1hq0A)K844 because E (beta_S) conformation "forbidden" or filtered. T0547 275 :L 1hq0A 843 :I T0547 277 :VEYSQFK 1hq0A 845 :IALEEVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=66242 # 1zwxA.275.195 read from T0547.t04.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. T0547 275 :L 1zwxA 230 :L T0547 277 :VEYSQFK 1zwxA 232 :VNYGTDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66244 # 1zavA.275.25 read from T0547.t04.many.frag # found chain 1zavA in template set Warning: unaligning (T0547)E278 (1zavA)D28 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :LAV 1zavA 25 :LFA T0547 279 :YSQFK 1zavA 29 :FLGFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=66246 # 1c8nA.275.204 read from T0547.t04.many.frag # found chain 1c8nA in template set Warning: unaligning (T0547)S280 (1c8nA)T210 because G (3-10) conformation "forbidden" or filtered. T0547 275 :LAVEY 1c8nA 205 :VDVDV T0547 281 :QFK 1c8nA 211 :RFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=66248 # 2a40B.275.168 read from T0547.t04.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)A276 (2a40B)N170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (2a40B)D172 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (2a40B)C173 because S (epsilon) conformation "forbidden" or filtered. T0547 275 :L 2a40B 169 :F T0547 277 :V 2a40B 171 :A T0547 280 :SQFK 2a40B 174 :SYVT Number of specific fragments extracted= 3 number of extra gaps= 2 total=66251 # 1ug6A.275.295 read from T0547.t04.many.frag # found chain 1ug6A in training set T0547 275 :LAVEYSQFK 1ug6A 296 :LPVRYLPPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66252 # 1h80A.275.119 read from T0547.t04.many.frag # found chain 1h80A in training set T0547 275 :LAVEYSQFK 1h80A 147 :FLVDFKDSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=66253 # 1s3rA.275.159 read from T0547.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0547)Q281 (1s3rA)G163 because T (delta_L) conformation "forbidden" or filtered. T0547 275 :LAVEYS 1s3rA 157 :ISVNLP T0547 282 :FK 1s3rA 164 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=66255 # 1s99A.275.81 read from T0547.t04.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)Q281 (1s99A)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 275 :LAVEYS 1s99A 82 :FSIGCP T0547 282 :FK 1s99A 89 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=66257 # 2d13A.275.144 read from T0547.t04.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)Q281 (2d13A)G151 because T (delta_L) conformation "forbidden" or filtered. T0547 275 :LAVEYS 2d13A 145 :VAVSAY T0547 282 :FK 2d13A 152 :LN Number of specific fragments extracted= 2 number of extra gaps= 1 total=66259 # 1jovA.275.72 read from T0547.t04.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)Y279 (1jovA)Y77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1jovA)P78 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1jovA)G81 because S (epsilon) conformation "forbidden" or filtered. T0547 275 :LAVE 1jovA 73 :VPIC T0547 281 :QF 1jovA 79 :WF Number of specific fragments extracted= 2 number of extra gaps= 2 total=66261 # 1fcdA.275.105 read from T0547.t04.many.frag # found chain 1fcdA in template set T0547 275 :LAVEYSQFK 1fcdA 106 :IELIYDKIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66262 # 1iab.275.112 read from T0547.t04.many.frag # found chain 1iab in training set Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE in next template residue (1iab)T114 Warning: unaligning (T0547)A276 because of BadResidue code BAD_PEPTIDE at template residue (1iab)T114 T0547 277 :VEYSQFK 1iab 115 :INYQNVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=66263 # 1vhwA.275.93 read from T0547.t04.many.frag # found chain 1vhwA in training set Warning: unaligning (T0547)L275 (1vhwA)C92 because Y (epsilon') conformation "forbidden" or filtered. T0547 276 :AVEYSQFK 1vhwA 93 :GAVNEGIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=66264 # 1xd3A.275.188 read from T0547.t04.many.frag # found chain 1xd3A in training set Warning: unaligning (T0547)L275 (1xd3A)F189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1xd3A)E195 because P (beta_P) conformation "forbidden" or filtered. T0547 276 :AVEYS 1xd3A 190 :PINHG T0547 282 :FK 1xd3A 196 :TS Number of specific fragments extracted= 2 number of extra gaps= 2 total=66266 # 1ayoA.275.27 read from T0547.t04.many.frag # found chain 1ayoA in template set T0547 275 :LAVEYSQFK 1ayoA 30 :LSVSYIGSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=66267 # 1lfpA.275.139 read from T0547.t04.many.frag # found chain 1lfpA in training set T0547 275 :LAVEYSQFK 1lfpA 140 :IEVPAKEVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=66268 # 2cvbA.275.71 read from T0547.t04.many.frag # found chain 2cvbA in training set T0547 275 :LAVEYSQFK 2cvbA 72 :NANDYEKYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=66269 # 1g6sA.275.137 read from T0547.t04.many.frag # found chain 1g6sA in training set Warning: unaligning (T0547)Q281 (1g6sA)E144 because Y (epsilon') conformation "forbidden" or filtered. T0547 275 :LAVEYS 1g6sA 138 :AKITYL T0547 282 :FK 1g6sA 145 :QE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66271 # 1h6fA.275.37 read from T0547.t04.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)Q281 (1h6fA)G142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1h6fA)D144 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :LAVEYS 1h6fA 136 :FKVRCS T0547 282 :F 1h6fA 143 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=66273 # 1s12A.275.51 read from T0547.t04.many.frag # found chain 1s12A in template set T0547 275 :LAVEYSQFK 1s12A 52 :LKVKFEELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66274 # 1g8mA.275.204 read from T0547.t04.many.frag # found chain 1g8mA in training set T0547 275 :LAVEYSQFK 1g8mA 205 :LPLRYGMNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=66275 # 1fvkA.275.158 read from T0547.t04.many.frag # found chain 1fvkA in training set T0547 275 :LAVEYSQFK 1fvkA 159 :YQLNPQGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66276 # 1z90A.275.258 read from T0547.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)S280 (1z90A)E264 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1z90A)G265 because T (delta_L) conformation "forbidden" or filtered. T0547 275 :LAVEY 1z90A 259 :TLISY T0547 282 :FK 1z90A 266 :KV Number of specific fragments extracted= 2 number of extra gaps= 1 total=66278 # 2a74A.275.183 read from T0547.t04.many.frag # found chain 2a74A in template set T0547 275 :LAVEYSQFK 2a74A 184 :IRAYYENSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=66279 # 1unnC.275.51 read from T0547.t04.many.frag # found chain 1unnC in template set T0547 275 :LAVEYSQFK 1unnC 288 :VKLKFDDFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=66280 # 1eu1A.275.353 read from T0547.t04.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)F282 (1eu1A)S361 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1eu1A)N362 because L (left) conformation "forbidden" or filtered. T0547 275 :LAVEYSQ 1eu1A 354 :FGLSYHY Number of specific fragments extracted= 1 number of extra gaps= 1 total=66281 # 1ne9A.275.147 read from T0547.t04.many.frag # found chain 1ne9A in training set T0547 275 :LAVEYSQFK 1ne9A 148 :MVLDLTKFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=66282 # 1h80A.276.120 read from T0547.t04.many.frag # found chain 1h80A in training set T0547 276 :AVEYSQFKN 1h80A 148 :LVDFKDSRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66283 # 1knwA.276.228 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)F282 (1knwA)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 276 :AVEYSQ 1knwA 229 :SVPYQQ T0547 283 :KN 1knwA 236 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66285 # 1xd3A.276.189 read from T0547.t04.many.frag # found chain 1xd3A in training set Warning: unaligning (T0547)S280 (1xd3A)G194 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1xd3A)S197 because Y (epsilon') conformation "forbidden" or filtered. T0547 276 :AVEY 1xd3A 190 :PINH T0547 281 :QF 1xd3A 195 :ET T0547 284 :N 1xd3A 198 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=66288 # 1s3rA.276.160 read from T0547.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0547)K283 (1s3rA)K165 because Y (epsilon') conformation "forbidden" or filtered. T0547 276 :AVEYSQF 1s3rA 158 :SVNLPGL T0547 284 :N 1s3rA 166 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=66290 # 1y8aA.276.148 read from T0547.t04.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)E278 (1y8aA)D129 because D (zeta) conformation "forbidden" or filtered. T0547 276 :AV 1y8aA 127 :EV T0547 279 :YSQFKN 1y8aA 130 :FDSIAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=66292 # 2d13A.276.145 read from T0547.t04.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)E278 (2d13A)S148 because D (zeta) conformation "forbidden" or filtered. T0547 276 :AV 2d13A 146 :AV T0547 279 :YSQFKN 2d13A 149 :AYGLNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66294 # 1zavA.276.26 read from T0547.t04.many.frag # found chain 1zavA in template set Warning: unaligning (T0547)A276 (1zavA)F26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1zavA)D28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (1zavA)F29 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1zavA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 277 :V 1zavA 27 :A T0547 280 :S 1zavA 30 :L T0547 282 :FKN 1zavA 32 :FTV Number of specific fragments extracted= 3 number of extra gaps= 3 total=66297 # 1hq0A.276.124 read from T0547.t04.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)A276 (1hq0A)K844 because E (beta_S) conformation "forbidden" or filtered. T0547 277 :VEYSQFKN 1hq0A 845 :IALEEVQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=66298 # 1c8nA.276.205 read from T0547.t04.many.frag # found chain 1c8nA in template set Warning: unaligning (T0547)S280 (1c8nA)T210 because G (3-10) conformation "forbidden" or filtered. T0547 276 :AVEY 1c8nA 206 :DVDV T0547 281 :QFKN 1c8nA 211 :RFDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=66300 # 2a40B.276.169 read from T0547.t04.many.frag # found chain 2a40B in training set T0547 276 :AVEYSQFKN 2a40B 170 :NADCSYVTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=66301 # 1e5kA.276.167 read from T0547.t04.many.frag # found chain 1e5kA in training set T0547 276 :AVEYSQFKN 1e5kA 168 :AVDFSDHKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66302 # 1s12A.276.52 read from T0547.t04.many.frag # found chain 1s12A in template set Warning: unaligning (T0547)Q281 (1s12A)E58 because L (left) conformation "forbidden" or filtered. T0547 276 :AVEYS 1s12A 53 :KVKFE T0547 282 :FKN 1s12A 59 :LEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=66304 # 1ug6A.276.296 read from T0547.t04.many.frag # found chain 1ug6A in training set T0547 276 :AVEYSQFKN 1ug6A 297 :PVRYLPPEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=66305 # 1qd1A.276.70 read from T0547.t04.many.frag # found chain 1qd1A in training set T0547 276 :AVEYSQFKN 1qd1A 72 :LIDMSRHHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=66306 # 1g8mA.276.205 read from T0547.t04.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)N284 (1g8mA)H214 because G (3-10) conformation "forbidden" or filtered. T0547 276 :AVEYSQFK 1g8mA 206 :PLRYGMNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=66307 1jb7B expands to /projects/compbio/data/pdb/1jb7.pdb.gz 1jb7B:Skipped atom 4843, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 4845, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 4847, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 4849, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 4851, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 4853, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 4855, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 4857, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 4859, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 4919, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4921, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4923, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4925, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4927, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4929, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4931, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4933, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5410, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5412, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5414, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5416, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5418, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5420, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5422, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5424, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5426, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5428, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5430, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5432, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5434, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5436, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5438, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5440, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5442, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5444, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5446, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5448, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5450, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5452, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5454, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5456, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5458, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5460, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5462, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5464, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5466, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5468, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5470, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5472, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5474, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5641, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5643, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5645, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5647, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5649, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5651, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5653, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5655, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5657, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5659, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5661, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6176, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6178, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6180, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6182, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6184, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6186, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6188, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6190, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6192, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6295, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6297, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6299, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6301, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6303, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6305, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6307, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6309, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6439, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6441, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6443, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6445, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6447, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6449, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6451, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 6453, because occupancy 0.500 <= existing 0.500 in 1jb7B # 1jb7B.276.24 read from T0547.t04.many.frag # adding 1jb7B to template set # found chain 1jb7B in template set Warning: unaligning (T0547)A276 (1jb7B)E25 because L (left) conformation "forbidden" or filtered. T0547 277 :VEYSQFKN 1jb7B 26 :GDFSKVSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=66308 # 1ne9A.276.148 read from T0547.t04.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)F282 (1ne9A)F155 because D (zeta) conformation "forbidden" or filtered. T0547 276 :AVEYSQ 1ne9A 149 :VLDLTK T0547 283 :KN 1ne9A 156 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=66310 # 1h6fA.276.38 read from T0547.t04.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)K283 (1h6fA)D144 because P (beta_P) conformation "forbidden" or filtered. T0547 276 :AVEYSQF 1h6fA 137 :KVRCSGL T0547 284 :N 1h6fA 145 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=66312 # 1fvkA.276.159 read from T0547.t04.many.frag # found chain 1fvkA in training set T0547 276 :AVEYSQFKN 1fvkA 160 :QLNPQGMDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=66313 # 1s99A.276.82 read from T0547.t04.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)Q281 (1s99A)G88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1s99A)T90 because P (beta_P) conformation "forbidden" or filtered. T0547 276 :AVEYS 1s99A 83 :SIGCP T0547 282 :F 1s99A 89 :D T0547 284 :N 1s99A 91 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=66316 # 1ayoA.276.28 read from T0547.t04.many.frag # found chain 1ayoA in template set T0547 276 :AVEYSQFKN 1ayoA 31 :SVSYIGSRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=66317 # 1jovA.276.73 read from T0547.t04.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)S280 (1jovA)P78 because C (cis) conformation "forbidden" or filtered. T0547 276 :AVEY 1jovA 74 :PICY T0547 281 :QFKN 1jovA 79 :WFGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=66319 # 2dpmA.276.141 read from T0547.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)S280 (2dpmA)G146 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (2dpmA)Y148 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (2dpmA)K149 because P (beta_P) conformation "forbidden" or filtered. T0547 276 :AVEY 2dpmA 142 :NVPY T0547 281 :Q 2dpmA 147 :R T0547 284 :N 2dpmA 150 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=66322 # 1iab.276.113 read from T0547.t04.many.frag # found chain 1iab in training set Warning: unaligning (T0547)A276 because of BadResidue code BAD_PEPTIDE at template residue (1iab)T114 Warning: unaligning (T0547)K283 (1iab)D121 because P (beta_P) conformation "forbidden" or filtered. T0547 277 :VEYSQF 1iab 115 :INYQNV T0547 284 :N 1iab 122 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=66324 # 2cvbA.276.72 read from T0547.t04.many.frag # found chain 2cvbA in training set T0547 276 :AVEYSQFKN 2cvbA 73 :ANDYEKYPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66325 1c6vX expands to /projects/compbio/data/pdb/1c6v.pdb.gz 1c6vX:# 1c6vX.276.11 read from T0547.t04.many.frag # adding 1c6vX to template set # found chain 1c6vX in template set Warning: unaligning (T0547)F282 (1c6vX)G230 because G (3-10) conformation "forbidden" or filtered. T0547 276 :AVEYSQ 1c6vX 224 :RVYYRE T0547 283 :KN 1c6vX 231 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=66327 # 1obfO.276.135 read from T0547.t04.many.frag # found chain 1obfO in template set T0547 276 :AVEYSQFKN 1obfO 136 :GVNHGTLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=66328 # 1onrA.276.260 read from T0547.t04.many.frag # found chain 1onrA in template set T0547 276 :AVEYSQFKN 1onrA 262 :KLSYTGEVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=66329 # 1fcdA.276.106 read from T0547.t04.many.frag # found chain 1fcdA in template set T0547 276 :AVEYSQFKN 1fcdA 107 :ELIYDKIEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=66330 # 1bu8A.276.180 read from T0547.t04.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)Q281 (1bu8A)G184 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1bu8A)P186 because P (beta_P) conformation "forbidden" or filtered. T0547 276 :AVEYS 1bu8A 179 :EPCFQ T0547 282 :F 1bu8A 185 :L T0547 284 :N 1bu8A 187 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=66333 # 1xd3A.277.190 read from T0547.t04.many.frag # found chain 1xd3A in training set Warning: unaligning (T0547)S280 (1xd3A)G194 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1xd3A)S197 because Y (epsilon') conformation "forbidden" or filtered. T0547 277 :VEY 1xd3A 191 :INH T0547 281 :QF 1xd3A 195 :ET T0547 284 :NE 1xd3A 198 :DE Number of specific fragments extracted= 3 number of extra gaps= 2 total=66336 # 1s3rA.277.161 read from T0547.t04.many.frag # found chain 1s3rA in template set T0547 277 :VEYSQFKNE 1s3rA 159 :VNLPGLKNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=66337 # 1jb7B.277.25 read from T0547.t04.many.frag # found chain 1jb7B in template set Warning: unaligning (T0547)V277 (1jb7B)G26 because L (left) conformation "forbidden" or filtered. T0547 278 :EYSQFKNE 1jb7B 27 :DFSKVSSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=66338 4dpvZ expands to /projects/compbio/data/pdb/4dpv.pdb.gz 4dpvZ:# 4dpvZ.277.230 read from T0547.t04.many.frag # adding 4dpvZ to template set # found chain 4dpvZ in template set Warning: unaligning (T0547)E278 (4dpvZ)I232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (4dpvZ)G235 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (4dpvZ)D237 because N (gamma') conformation "forbidden" or filtered. T0547 277 :V 4dpvZ 231 :N T0547 279 :YS 4dpvZ 233 :YH T0547 282 :F 4dpvZ 236 :T T0547 284 :NE 4dpvZ 238 :PD Number of specific fragments extracted= 4 number of extra gaps= 3 total=66342 # 2d13A.277.146 read from T0547.t04.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)E278 (2d13A)S148 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (2d13A)Y150 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (2d13A)G151 because T (delta_L) conformation "forbidden" or filtered. T0547 277 :V 2d13A 147 :V T0547 279 :Y 2d13A 149 :A T0547 282 :FKNE 2d13A 152 :LNES Number of specific fragments extracted= 3 number of extra gaps= 2 total=66345 # 2a40B.277.170 read from T0547.t04.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)E278 (2a40B)D172 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (2a40B)C173 because S (epsilon) conformation "forbidden" or filtered. T0547 277 :V 2a40B 171 :A T0547 280 :SQFKNE 2a40B 174 :SYVTSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=66347 # 1obfO.277.136 read from T0547.t04.many.frag # found chain 1obfO in template set T0547 277 :VEYSQFKNE 1obfO 137 :VNHGTLKST Number of specific fragments extracted= 1 number of extra gaps= 0 total=66348 # 1c8nA.277.206 read from T0547.t04.many.frag # found chain 1c8nA in template set Warning: unaligning (T0547)S280 (1c8nA)T210 because G (3-10) conformation "forbidden" or filtered. T0547 277 :VEY 1c8nA 207 :VDV T0547 281 :QFKNE 1c8nA 211 :RFDKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=66350 # 2bkxA.277.66 read from T0547.t04.many.frag # found chain 2bkxA in training set T0547 277 :VEYSQFKNE 2bkxA 67 :DEYAGLSSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66351 # 1hq0A.277.125 read from T0547.t04.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)E285 (1hq0A)G853 because T (delta_L) conformation "forbidden" or filtered. T0547 277 :VEYSQFKN 1hq0A 845 :IALEEVQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=66352 # 1qd1A.277.71 read from T0547.t04.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)E278 (1qd1A)D74 because D (zeta) conformation "forbidden" or filtered. T0547 277 :V 1qd1A 73 :I T0547 279 :YSQFKNE 1qd1A 75 :MSRHHGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66354 # 1x38A.277.431 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)V277 (1x38A)I432 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1x38A)G436 because S (epsilon) conformation "forbidden" or filtered. T0547 278 :EYS 1x38A 433 :EWQ T0547 282 :FKNE 1x38A 437 :DTGR Number of specific fragments extracted= 2 number of extra gaps= 2 total=66356 # 1h80A.277.121 read from T0547.t04.many.frag # found chain 1h80A in training set T0547 277 :VEYSQFKNE 1h80A 149 :VDFKDSRDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=66357 # 1s12A.277.53 read from T0547.t04.many.frag # found chain 1s12A in template set T0547 277 :VEYSQFKNE 1s12A 54 :VKFEELENC Number of specific fragments extracted= 1 number of extra gaps= 0 total=66358 # 1iab.277.114 read from T0547.t04.many.frag # found chain 1iab in training set Warning: unaligning (T0547)K283 (1iab)D121 because P (beta_P) conformation "forbidden" or filtered. T0547 277 :VEYSQF 1iab 115 :INYQNV T0547 284 :NE 1iab 122 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=66360 # 1e5kA.277.168 read from T0547.t04.many.frag # found chain 1e5kA in training set T0547 277 :VEYSQFKNE 1e5kA 169 :VDFSDHKDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66361 # 1ryoA.277.133 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)K283 (1ryoA)P140 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1ryoA)P142 because C (cis) conformation "forbidden" or filtered. T0547 277 :VEYSQF 1ryoA 134 :LLYCDL T0547 284 :N 1ryoA 141 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=66363 # 1onrA.277.261 read from T0547.t04.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)E278 (1onrA)S264 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1onrA)V269 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1onrA)A271 because P (beta_P) conformation "forbidden" or filtered. T0547 277 :V 1onrA 263 :L T0547 279 :YSQF 1onrA 265 :YTGE T0547 284 :N 1onrA 270 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=66366 # 1bu8A.277.181 read from T0547.t04.many.frag # found chain 1bu8A in training set T0547 277 :VEYSQFKNE 1bu8A 180 :PCFQGLPEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66367 # 1tv9A.277.194 read from T0547.t04.many.frag # found chain 1tv9A in template set Warning: unaligning (T0547)E278 (1tv9A)T196 because Y (epsilon') conformation "forbidden" or filtered. T0547 277 :V 1tv9A 195 :L T0547 279 :YSQFKNE 1tv9A 197 :HPSFTSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66369 # 1h6fA.277.39 read from T0547.t04.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)Q281 (1h6fA)G142 because L (left) conformation "forbidden" or filtered. T0547 277 :VEYS 1h6fA 138 :VRCS T0547 282 :FKNE 1h6fA 143 :LDKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=66371 # 2cvbA.277.73 read from T0547.t04.many.frag # found chain 2cvbA in training set T0547 277 :VEYSQFKNE 2cvbA 74 :NDYEKYPED Number of specific fragments extracted= 1 number of extra gaps= 0 total=66372 # 1zzmA.277.210 read from T0547.t04.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)V277 (1zzmA)M211 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1zzmA)P212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1zzmA)G215 because T (delta_L) conformation "forbidden" or filtered. T0547 279 :YS 1zzmA 213 :LN T0547 282 :FKNE 1zzmA 216 :FQGQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=66374 # 1q8dA.277.74 read from T0547.t04.many.frag # found chain 1q8dA in training set Warning: unaligning (T0547)E278 (1q8dA)D314 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1q8dA)G319 because S (epsilon) conformation "forbidden" or filtered. T0547 277 :V 1q8dA 313 :C T0547 279 :YSQF 1q8dA 315 :CSNS T0547 284 :NE 1q8dA 320 :ND Number of specific fragments extracted= 3 number of extra gaps= 2 total=66377 # 1ctt.277.89 read from T0547.t04.many.frag # found chain 1ctt in template set T0547 277 :VEYSQFKNE 1ctt 90 :MEFIGATMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=66378 # 1oi0A.277.95 read from T0547.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)Q281 (1oi0A)P100 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1oi0A)Y101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1oi0A)D102 because P (beta_P) conformation "forbidden" or filtered. T0547 277 :VEYS 1oi0A 96 :IVCY T0547 284 :NE 1oi0A 103 :EN Number of specific fragments extracted= 2 number of extra gaps= 1 total=66380 # 1m1fA.277.8 read from T0547.t04.many.frag # found chain 1m1fA in training set Warning: unaligning (T0547)Y279 (1m1fA)L11 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1m1fA)P13 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1m1fA)A15 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1m1fA)G16 because S (epsilon) conformation "forbidden" or filtered. T0547 277 :VE 1m1fA 9 :VS T0547 280 :S 1m1fA 12 :D T0547 282 :F 1m1fA 14 :T T0547 285 :E 1m1fA 17 :H Number of specific fragments extracted= 4 number of extra gaps= 3 total=66384 # 2akaB.277.75 read from T0547.t04.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)N284 (2akaB)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 277 :VEYSQFK 2akaB 81 :AEFLHCK T0547 285 :E 2akaB 89 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=66386 1y2qA expands to /projects/compbio/data/pdb/1y2q.pdb.gz 1y2qA:# 1y2qA.277.78 read from T0547.t04.many.frag # adding 1y2qA to template set # found chain 1y2qA in template set Warning: unaligning (T0547)K283 (1y2qA)S85 because Y (epsilon') conformation "forbidden" or filtered. T0547 277 :VEYSQF 1y2qA 79 :YPFAHL T0547 284 :NE 1y2qA 86 :SE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66388 1v0dA expands to /projects/compbio/data/pdb/1v0d.pdb.gz 1v0dA:# 1v0dA.277.142 read from T0547.t04.many.frag # adding 1v0dA to template set # found chain 1v0dA in template set T0547 277 :VEYSQFKNE 1v0dA 143 :SWFEGLESR Number of specific fragments extracted= 1 number of extra gaps= 0 total=66389 # 4dpvZ.278.231 read from T0547.t04.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)Q281 (4dpvZ)G235 because Y (epsilon') conformation "forbidden" or filtered. T0547 278 :EYS 4dpvZ 232 :IYH T0547 282 :FKNEK 4dpvZ 236 :TDPDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=66391 # 1jb7B.278.26 read from T0547.t04.many.frag # found chain 1jb7B in template set Warning: unaligning (T0547)E278 (1jb7B)D27 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1jb7B)S32 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQF 1jb7B 28 :FSKV T0547 284 :NEK 1jb7B 33 :SNL Number of specific fragments extracted= 2 number of extra gaps= 2 total=66393 # 1xd3A.278.191 read from T0547.t04.many.frag # found chain 1xd3A in training set Warning: unaligning (T0547)S280 (1xd3A)G194 because S (epsilon) conformation "forbidden" or filtered. T0547 278 :EY 1xd3A 192 :NH T0547 281 :QFKNEK 1xd3A 195 :ETSDET Number of specific fragments extracted= 2 number of extra gaps= 1 total=66395 # 1s3rA.278.162 read from T0547.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0547)Q281 (1s3rA)G163 because T (delta_L) conformation "forbidden" or filtered. T0547 278 :EYS 1s3rA 160 :NLP T0547 282 :FKNEK 1s3rA 164 :LKNGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66397 # 2bkxA.278.67 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)S280 (2bkxA)A70 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EY 2bkxA 68 :EY T0547 281 :QFKNEK 2bkxA 71 :GLSSDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=66399 # 1obfO.278.137 read from T0547.t04.many.frag # found chain 1obfO in template set T0547 278 :EYSQFKNEK 1obfO 138 :NHGTLKSTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66400 # 2d13A.278.147 read from T0547.t04.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)Q281 (2d13A)G151 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (2d13A)N153 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYS 2d13A 148 :SAY T0547 282 :F 2d13A 152 :L T0547 284 :NEK 2d13A 154 :ESW Number of specific fragments extracted= 3 number of extra gaps= 2 total=66403 # 1w5rA.278.97 read from T0547.t04.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)S280 (1w5rA)W97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1w5rA)M98 because L (left) conformation "forbidden" or filtered. T0547 278 :EY 1w5rA 95 :VV T0547 282 :FKNEK 1w5rA 99 :RADDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=66405 # 1x38A.278.432 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)Q281 (1x38A)G436 because S (epsilon) conformation "forbidden" or filtered. T0547 278 :EYS 1x38A 433 :EWQ T0547 282 :FKNEK 1x38A 437 :DTGRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=66407 # 1qd1A.278.72 read from T0547.t04.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)E278 (1qd1A)D74 because D (zeta) conformation "forbidden" or filtered. T0547 279 :YSQFKNEK 1qd1A 75 :MSRHHGEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=66408 # 1v0dA.278.143 read from T0547.t04.many.frag # found chain 1v0dA in template set Warning: unaligning (T0547)K283 (1v0dA)E149 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYSQF 1v0dA 144 :WFEGL T0547 284 :NEK 1v0dA 150 :SRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=66410 # 1zdyA.278.119 read from T0547.t04.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)K286 (1zdyA)N128 because D (zeta) conformation "forbidden" or filtered. T0547 278 :EYSQFKNE 1zdyA 120 :TYAFFPTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=66411 # 2a40B.278.171 read from T0547.t04.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)E278 (2a40B)D172 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (2a40B)C173 because S (epsilon) conformation "forbidden" or filtered. T0547 280 :SQFKNEK 2a40B 174 :SYVTSSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=66412 # 1c8nA.278.207 read from T0547.t04.many.frag # found chain 1c8nA in template set T0547 278 :EYSQFKNEK 1c8nA 208 :DVTRFDKAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=66413 # 1zp4A.278.237 read from T0547.t04.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)Q281 (1zp4A)G241 because T (delta_L) conformation "forbidden" or filtered. T0547 278 :EYS 1zp4A 238 :MFD T0547 282 :FKNEK 1zp4A 242 :LDDDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=66415 # 1y2qA.278.79 read from T0547.t04.many.frag # found chain 1y2qA in template set Warning: unaligning (T0547)K283 (1y2qA)S85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1y2qA)L88 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYSQF 1y2qA 80 :PFAHL T0547 284 :NE 1y2qA 86 :SE Number of specific fragments extracted= 2 number of extra gaps= 2 total=66417 # 1e5kA.278.169 read from T0547.t04.many.frag # found chain 1e5kA in training set Warning: unaligning (T0547)Y279 (1e5kA)F171 because G (3-10) conformation "forbidden" or filtered. T0547 278 :E 1e5kA 170 :D T0547 280 :SQFKNEK 1e5kA 172 :SDHKDAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=66419 # 1onrA.278.262 read from T0547.t04.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)E278 (1onrA)S264 because Y (epsilon') conformation "forbidden" or filtered. T0547 279 :YSQFKNEK 1onrA 265 :YTGEVKAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=66420 # 1ryoA.278.134 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)E285 (1ryoA)P142 because C (cis) conformation "forbidden" or filtered. T0547 278 :EYSQFKN 1ryoA 135 :LYCDLPE T0547 286 :K 1ryoA 143 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=66422 # 1nar.278.129 read from T0547.t04.many.frag # found chain 1nar in training set Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE in next template residue (1nar)P139 T0547 278 :EYSQFKNE 1nar 130 :HYEHIRSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=66423 # 2cvbA.278.74 read from T0547.t04.many.frag # found chain 2cvbA in training set T0547 278 :EYSQFKNEK 2cvbA 75 :DYEKYPEDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66424 # 1or7A.278.62 read from T0547.t04.many.frag # found chain 1or7A in template set Warning: unaligning (T0547)K286 (1or7A)S68 because Y (epsilon') conformation "forbidden" or filtered. T0547 278 :EYSQFKNE 1or7A 60 :ALDSFRGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=66425 # 1q8dA.278.75 read from T0547.t04.many.frag # found chain 1q8dA in training set Warning: unaligning (T0547)E278 (1q8dA)D314 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1q8dA)G319 because S (epsilon) conformation "forbidden" or filtered. T0547 279 :YSQF 1q8dA 315 :CSNS T0547 284 :NEK 1q8dA 320 :NDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=66427 # 1v2zA.278.75 read from T0547.t04.many.frag # found chain 1v2zA in training set Warning: unaligning (T0547)E278 (1v2zA)K248 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1v2zA)G251 because S (epsilon) conformation "forbidden" or filtered. T0547 279 :YS 1v2zA 249 :LE T0547 282 :FKNEK 1v2zA 252 :RSEDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=66429 # 1oruA.278.33 read from T0547.t04.many.frag # found chain 1oruA in training set Warning: unaligning (T0547)E278 (1oruA)D31 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1oruA)G34 because S (epsilon) conformation "forbidden" or filtered. T0547 279 :YS 1oruA 32 :YG T0547 282 :FKNEK 1oruA 35 :IPGDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=66431 # 2cu6A.278.45 read from T0547.t04.many.frag # found chain 2cu6A in template set Warning: unaligning (T0547)E278 (2cu6A)R46 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (2cu6A)T48 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (2cu6A)T51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (2cu6A)P52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (2cu6A)G53 because S (epsilon) conformation "forbidden" or filtered. T0547 279 :Y 2cu6A 47 :M T0547 281 :QF 2cu6A 49 :LT T0547 286 :K 2cu6A 54 :C Number of specific fragments extracted= 3 number of extra gaps= 3 total=66434 # 1bu8A.278.182 read from T0547.t04.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)K286 (1bu8A)V189 because G (3-10) conformation "forbidden" or filtered. T0547 278 :EYSQFKNE 1bu8A 181 :CFQGLPEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=66435 # 1oz2A.278.108 read from T0547.t04.many.frag # found chain 1oz2A in training set T0547 278 :EYSQFKNEK 1oz2A 305 :PPKGYKEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66436 # 2akaB.278.76 read from T0547.t04.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)E285 (2akaB)K89 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYSQFKN 2akaB 82 :EFLHCKG T0547 286 :K 2akaB 90 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=66438 # 1ctt.278.90 read from T0547.t04.many.frag # found chain 1ctt in template set Warning: unaligning (T0547)E278 (1ctt)E91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1ctt)I93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1ctt)Q99 because G (3-10) conformation "forbidden" or filtered. T0547 279 :Y 1ctt 92 :F T0547 281 :QFKNE 1ctt 94 :GATMQ Number of specific fragments extracted= 2 number of extra gaps= 3 total=66440 # 4dpvZ.279.232 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 279 :YSQFKNEKS 4dpvZ 233 :YHGTDPDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66441 # 1jb7B.279.27 read from T0547.t04.many.frag # found chain 1jb7B in template set T0547 279 :YSQFKNEKS 1jb7B 28 :FSKVSSNLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=66442 # 1s3rA.279.163 read from T0547.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0547)Q281 (1s3rA)G163 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1s3rA)K165 because Y (epsilon') conformation "forbidden" or filtered. T0547 279 :YS 1s3rA 161 :LP T0547 282 :F 1s3rA 164 :L T0547 284 :NEKS 1s3rA 166 :NGES Number of specific fragments extracted= 3 number of extra gaps= 2 total=66445 # 1v0dA.279.144 read from T0547.t04.many.frag # found chain 1v0dA in template set T0547 279 :YSQFKNEKS 1v0dA 145 :FEGLESRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=66446 # 1w5rA.279.98 read from T0547.t04.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)Q281 (1w5rA)M98 because L (left) conformation "forbidden" or filtered. T0547 279 :YS 1w5rA 96 :VW T0547 282 :FKNEKS 1w5rA 99 :RADDAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=66448 # 2bkxA.279.68 read from T0547.t04.many.frag # found chain 2bkxA in training set T0547 279 :YSQFKNEKS 2bkxA 69 :YAGLSSDDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=66449 # 1xd3A.279.192 read from T0547.t04.many.frag # found chain 1xd3A in training set Warning: unaligning (T0547)S280 (1xd3A)G194 because S (epsilon) conformation "forbidden" or filtered. T0547 279 :Y 1xd3A 193 :H T0547 281 :QFKNEKS 1xd3A 195 :ETSDETL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66451 # 1zdyA.279.120 read from T0547.t04.many.frag # found chain 1zdyA in training set T0547 279 :YSQFKNEKS 1zdyA 121 :YAFFPTDNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=66452 # 1obfO.279.138 read from T0547.t04.many.frag # found chain 1obfO in template set Warning: unaligning (T0547)S287 (1obfO)T147 because G (3-10) conformation "forbidden" or filtered. T0547 279 :YSQFKNEK 1obfO 139 :HGTLKSTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=66453 # 1zp4A.279.238 read from T0547.t04.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)Q281 (1zp4A)G241 because T (delta_L) conformation "forbidden" or filtered. T0547 279 :YS 1zp4A 239 :FD T0547 282 :FKNEKS 1zp4A 242 :LDDDAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66455 # 1ryoA.279.135 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)N284 (1ryoA)E141 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1ryoA)P142 because C (cis) conformation "forbidden" or filtered. T0547 279 :YSQFK 1ryoA 136 :YCDLP T0547 286 :KS 1ryoA 143 :RK Number of specific fragments extracted= 2 number of extra gaps= 1 total=66457 # 1x38A.279.433 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)N284 (1x38A)G439 because S (epsilon) conformation "forbidden" or filtered. T0547 279 :YSQFK 1x38A 434 :WQGDT T0547 285 :EKS 1x38A 440 :RTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=66459 # 1lxjA.279.79 read from T0547.t04.many.frag # found chain 1lxjA in training set T0547 279 :YSQFKNEKS 1lxjA 80 :RVGTRTDKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=66460 # 2cu6A.279.46 read from T0547.t04.many.frag # found chain 2cu6A in template set Warning: unaligning (T0547)S280 (2cu6A)T48 because Y (epsilon') conformation "forbidden" or filtered. T0547 279 :Y 2cu6A 47 :M T0547 281 :QFKNEKS 2cu6A 49 :LTTPGCP Number of specific fragments extracted= 2 number of extra gaps= 1 total=66462 # 1v2zA.279.76 read from T0547.t04.many.frag # found chain 1v2zA in training set T0547 279 :YSQFKNEKS 1v2zA 249 :LEGRSEDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66463 # 1c8nA.279.208 read from T0547.t04.many.frag # found chain 1c8nA in template set Warning: unaligning (T0547)K286 (1c8nA)W216 because E (beta_S) conformation "forbidden" or filtered. T0547 279 :YSQFKNE 1c8nA 209 :VTRFDKA T0547 287 :S 1c8nA 217 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=66465 # 2d13A.279.148 read from T0547.t04.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)S280 (2d13A)Y150 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :Y 2d13A 149 :A T0547 281 :QFKNEKS 2d13A 151 :GLNESWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66467 # 1y2qA.279.80 read from T0547.t04.many.frag # found chain 1y2qA in template set Warning: unaligning (T0547)K283 (1y2qA)S85 because Y (epsilon') conformation "forbidden" or filtered. T0547 279 :YSQF 1y2qA 81 :FAHL T0547 284 :NEKS 1y2qA 86 :SELA Number of specific fragments extracted= 2 number of extra gaps= 1 total=66469 # 1qd1A.279.73 read from T0547.t04.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)N284 (1qd1A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0547 279 :YSQFK 1qd1A 75 :MSRHH T0547 285 :EKS 1qd1A 81 :EHP Number of specific fragments extracted= 2 number of extra gaps= 1 total=66471 # 1onrA.279.263 read from T0547.t04.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)E285 (1onrA)A271 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQFKN 1onrA 265 :YTGEVK T0547 286 :KS 1onrA 272 :RP Number of specific fragments extracted= 2 number of extra gaps= 1 total=66473 # 2a40B.279.172 read from T0547.t04.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)Y279 (2a40B)C173 because S (epsilon) conformation "forbidden" or filtered. T0547 280 :SQFKNEKS 2a40B 174 :SYVTSSQW Number of specific fragments extracted= 1 number of extra gaps= 1 total=66474 # 1or7A.279.63 read from T0547.t04.many.frag # found chain 1or7A in template set Warning: unaligning (T0547)K286 (1or7A)S68 because Y (epsilon') conformation "forbidden" or filtered. T0547 279 :YSQFKNE 1or7A 61 :LDSFRGD T0547 287 :S 1or7A 69 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=66476 # 1ijbA.279.123 read from T0547.t04.many.frag # found chain 1ijbA in training set Warning: unaligning (T0547)S280 (1ijbA)S624 because Y (epsilon') conformation "forbidden" or filtered. T0547 279 :Y 1ijbA 623 :A T0547 281 :QFKNEKS 1ijbA 625 :QEPQRMS Number of specific fragments extracted= 2 number of extra gaps= 1 total=66478 # 1oruA.279.34 read from T0547.t04.many.frag # found chain 1oruA in training set Warning: unaligning (T0547)N284 (1oruA)G37 because T (delta_L) conformation "forbidden" or filtered. T0547 279 :YSQFK 1oruA 32 :YGGIP T0547 285 :EKS 1oruA 38 :DLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=66480 # 1nar.279.130 read from T0547.t04.many.frag # found chain 1nar in training set Warning: unaligning (T0547)N284 (1nar)S136 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE in next template residue (1nar)P139 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1nar)P139 T0547 279 :YSQFK 1nar 131 :YEHIR T0547 285 :E 1nar 137 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=66482 1k78A expands to /projects/compbio/data/pdb/1k78.pdb.gz 1k78A:Skipped atom 2442, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2444, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2448, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2450, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2452, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2454, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2456, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2458, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2460, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2582, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2584, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2586, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2588, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2590, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2592, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2594, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2596, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 2598, because occupancy 0.500 <= existing 0.500 in 1k78A # 1k78A.279.120 read from T0547.t04.many.frag # adding 1k78A to template set # found chain 1k78A in template set Warning: unaligning (T0547)Y279 (1k78A)E121 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1k78A)R122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1k78A)D125 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QF 1k78A 123 :VC T0547 284 :NEKS 1k78A 126 :NDTV Number of specific fragments extracted= 2 number of extra gaps= 2 total=66484 # 2cvbA.279.75 read from T0547.t04.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)K286 (2cvbA)A83 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQFKNE 2cvbA 76 :YEKYPED T0547 287 :S 2cvbA 84 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=66486 # 1vbkA.279.264 read from T0547.t04.many.frag # found chain 1vbkA in template set Warning: unaligning (T0547)K286 (1vbkA)V272 because L (left) conformation "forbidden" or filtered. T0547 279 :YSQFKNE 1vbkA 265 :PNDLNSE T0547 287 :S 1vbkA 273 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=66488 # 1q8dA.279.76 read from T0547.t04.many.frag # found chain 1q8dA in training set Warning: unaligning (T0547)Y279 (1q8dA)C315 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1q8dA)G319 because S (epsilon) conformation "forbidden" or filtered. T0547 280 :SQF 1q8dA 316 :SNS T0547 284 :NEKS 1q8dA 320 :NDLE Number of specific fragments extracted= 2 number of extra gaps= 2 total=66490 # 1oz2A.279.109 read from T0547.t04.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)Q281 (1oz2A)G308 because T (delta_L) conformation "forbidden" or filtered. T0547 279 :YS 1oz2A 306 :PK T0547 282 :FKNEKS 1oz2A 309 :YKEEEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=66492 # 4dpvZ.280.233 read from T0547.t04.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)Q281 (4dpvZ)G235 because Y (epsilon') conformation "forbidden" or filtered. T0547 280 :S 4dpvZ 234 :H T0547 282 :FKNEKSR 4dpvZ 236 :TDPDDVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=66494 # 1jb7B.280.28 read from T0547.t04.many.frag # found chain 1jb7B in template set T0547 280 :SQFKNEKSR 1jb7B 29 :SKVSSNLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=66495 # 1lxjA.280.80 read from T0547.t04.many.frag # found chain 1lxjA in training set T0547 280 :SQFKNEKSR 1lxjA 81 :VGTRTDKHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=66496 # 1w5rA.280.99 read from T0547.t04.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)K286 (1w5rA)A103 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQFKNE 1w5rA 97 :WMRADD T0547 287 :SR 1w5rA 104 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66498 # 1zdyA.280.121 read from T0547.t04.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)K283 (1zdyA)P125 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQF 1zdyA 122 :AFF T0547 284 :NEKSR 1zdyA 126 :TDNMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=66500 # 1v2zA.280.77 read from T0547.t04.many.frag # found chain 1v2zA in training set T0547 280 :SQFKNEKSR 1v2zA 250 :EGRSEDILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66501 # 1v0dA.280.145 read from T0547.t04.many.frag # found chain 1v0dA in template set Warning: unaligning (T0547)K283 (1v0dA)E149 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQF 1v0dA 146 :EGL T0547 284 :NEKSR 1v0dA 150 :SRFRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=66503 # 2bnxA.280.59 read from T0547.t04.many.frag # found chain 2bnxA in template set T0547 280 :SQFKNEKSR 2bnxA 190 :HDEKEETSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=66504 # 1k78A.280.121 read from T0547.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0547)S280 (1k78A)R122 because L (left) conformation "forbidden" or filtered. T0547 281 :QFKNEKSR 1k78A 123 :VCDNDTVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=66505 # 2bkxA.280.69 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)Q281 (2bkxA)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (2bkxA)D76 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :S 2bkxA 70 :A T0547 282 :FKNE 2bkxA 72 :LSSD T0547 287 :SR 2bkxA 77 :PN Number of specific fragments extracted= 3 number of extra gaps= 2 total=66508 # 1vr0A.280.156 read from T0547.t04.many.frag # found chain 1vr0A in template set Warning: unaligning (T0547)Q281 (1vr0A)G146 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1vr0A)Y148 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1vr0A)G149 because L (left) conformation "forbidden" or filtered. T0547 280 :S 1vr0A 145 :A T0547 282 :F 1vr0A 147 :T T0547 285 :EKSR 1vr0A 150 :EFSI Number of specific fragments extracted= 3 number of extra gaps= 2 total=66511 # 1ryoA.280.136 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)K283 (1ryoA)P140 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1ryoA)P142 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1ryoA)R143 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1ryoA)P145 because C (cis) conformation "forbidden" or filtered. T0547 280 :SQF 1ryoA 137 :CDL T0547 284 :N 1ryoA 141 :E T0547 287 :S 1ryoA 144 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=66514 # 1ijbA.280.124 read from T0547.t04.many.frag # found chain 1ijbA in training set Warning: unaligning (T0547)Q281 (1ijbA)Q625 because E (beta_S) conformation "forbidden" or filtered. T0547 280 :S 1ijbA 624 :S T0547 282 :FKNEKSR 1ijbA 626 :EPQRMSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=66516 # 1oz2A.280.110 read from T0547.t04.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)K283 (1oz2A)K310 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQF 1oz2A 307 :KGY T0547 284 :NEKSR 1oz2A 311 :EEEFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=66518 # 1obfO.280.139 read from T0547.t04.many.frag # found chain 1obfO in template set T0547 280 :SQFKNEKSR 1obfO 140 :GTLKSTDTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66519 # 1xd3A.280.193 read from T0547.t04.many.frag # found chain 1xd3A in training set Warning: unaligning (T0547)K286 (1xd3A)T200 because G (3-10) conformation "forbidden" or filtered. T0547 280 :SQFKNE 1xd3A 194 :GETSDE T0547 287 :SR 1xd3A 201 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66521 # 1s3rA.280.164 read from T0547.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0547)Q281 (1s3rA)G163 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1s3rA)K165 because Y (epsilon') conformation "forbidden" or filtered. T0547 280 :S 1s3rA 162 :P T0547 282 :F 1s3rA 164 :L T0547 284 :NEKSR 1s3rA 166 :NGESN Number of specific fragments extracted= 3 number of extra gaps= 2 total=66524 # 1y2qA.280.81 read from T0547.t04.many.frag # found chain 1y2qA in template set Warning: unaligning (T0547)E285 (1y2qA)E87 because N (gamma') conformation "forbidden" or filtered. T0547 280 :SQFKN 1y2qA 82 :AHLSS T0547 286 :KSR 1y2qA 88 :LAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=66526 # 1i88A.280.316 read from T0547.t04.many.frag # found chain 1i88A in training set Warning: unaligning (T0547)Q281 (1i88A)A318 because L (left) conformation "forbidden" or filtered. T0547 280 :S 1i88A 317 :L T0547 282 :FKNEKSR 1i88A 319 :LKPEKMN Number of specific fragments extracted= 2 number of extra gaps= 1 total=66528 # 1x38A.280.434 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)N284 (1x38A)G439 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1x38A)T442 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1x38A)V443 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQFK 1x38A 435 :QGDT T0547 285 :EK 1x38A 440 :RT Number of specific fragments extracted= 2 number of extra gaps= 2 total=66530 # 1c8nA.280.209 read from T0547.t04.many.frag # found chain 1c8nA in template set Warning: unaligning (T0547)S280 (1c8nA)T210 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1c8nA)W216 because E (beta_S) conformation "forbidden" or filtered. T0547 281 :QFKNE 1c8nA 211 :RFDKA T0547 287 :SR 1c8nA 217 :YS Number of specific fragments extracted= 2 number of extra gaps= 2 total=66532 # 1m2oA.280.249 read from T0547.t04.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)K283 (1m2oA)P253 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1m2oA)G255 because L (left) conformation "forbidden" or filtered. T0547 280 :SQF 1m2oA 250 :WSV T0547 284 :N 1m2oA 254 :A T0547 286 :KSR 1m2oA 256 :HRP Number of specific fragments extracted= 3 number of extra gaps= 2 total=66535 # 2cu6A.280.47 read from T0547.t04.many.frag # found chain 2cu6A in template set Warning: unaligning (T0547)S280 (2cu6A)T48 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (2cu6A)G53 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (2cu6A)C54 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QFKN 2cu6A 49 :LTTP T0547 287 :SR 2cu6A 55 :PL Number of specific fragments extracted= 2 number of extra gaps= 2 total=66537 # 1or7A.280.64 read from T0547.t04.many.frag # found chain 1or7A in template set Warning: unaligning (T0547)K286 (1or7A)S68 because Y (epsilon') conformation "forbidden" or filtered. T0547 280 :SQFKNE 1or7A 62 :DSFRGD T0547 287 :SR 1or7A 69 :AF Number of specific fragments extracted= 2 number of extra gaps= 1 total=66539 # 1efpB.280.85 read from T0547.t04.many.frag # found chain 1efpB in template set T0547 280 :SQFKNEKSR 1efpB 86 :VVAADDVQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=66540 # 1m65A.280.211 read from T0547.t04.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)Q281 (1m65A)D213 because L (left) conformation "forbidden" or filtered. T0547 280 :S 1m65A 212 :V T0547 282 :FKNEKSR 1m65A 214 :FPPERIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66542 # 1v4vA.280.163 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 280 :SQFKNEKSR 1v4vA 164 :EGKREEGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66543 # 2erbA.280.62 read from T0547.t04.many.frag # found chain 2erbA in training set Warning: unaligning (T0547)S280 (2erbA)K63 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (2erbA)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 281 :QFKNE 2erbA 64 :VVDDN T0547 287 :SR 2erbA 70 :DV Number of specific fragments extracted= 2 number of extra gaps= 2 total=66545 # 1nofA.280.136 read from T0547.t04.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)K283 (1nofA)P170 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1nofA)Y172 because Y (epsilon') conformation "forbidden" or filtered. T0547 280 :SQF 1nofA 167 :DWK T0547 284 :N 1nofA 171 :D T0547 286 :KSR 1nofA 173 :ESC Number of specific fragments extracted= 3 number of extra gaps= 2 total=66548 # 1y0zA.280.182 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 280 :SQFKNEKSR 1y0zA 183 :EDDDPSSPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66549 # 4dpvZ.281.234 read from T0547.t04.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)Q281 (4dpvZ)G235 because Y (epsilon') conformation "forbidden" or filtered. T0547 282 :FKNEKSRN 4dpvZ 236 :TDPDDVQF Number of specific fragments extracted= 1 number of extra gaps= 1 total=66550 # 1jb7B.281.29 read from T0547.t04.many.frag # found chain 1jb7B in template set Warning: unaligning (T0547)K283 (1jb7B)S32 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QF 1jb7B 30 :KV T0547 284 :NEKSRN 1jb7B 33 :SNLKKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=66552 # 2bnxA.281.60 read from T0547.t04.many.frag # found chain 2bnxA in template set Warning: unaligning (T0547)K283 (2bnxA)K193 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QF 2bnxA 191 :DE T0547 284 :NEKSRN 2bnxA 194 :EETSGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=66554 # 1lxjA.281.81 read from T0547.t04.many.frag # found chain 1lxjA in training set T0547 281 :QFKNEKSRN 1lxjA 82 :GTRTDKHQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=66555 # 1w5rA.281.100 read from T0547.t04.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)Q281 (1w5rA)M98 because L (left) conformation "forbidden" or filtered. T0547 282 :FKNEKSRN 1w5rA 99 :RADDAPLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=66556 # 1efpB.281.86 read from T0547.t04.many.frag # found chain 1efpB in template set T0547 281 :QFKNEKSRN 1efpB 87 :VAADDVQQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66557 # 1k78A.281.122 read from T0547.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0547)R288 (1k78A)P130 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QFKNEKS 1k78A 123 :VCDNDTV T0547 289 :N 1k78A 131 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=66559 # 1vr0A.281.157 read from T0547.t04.many.frag # found chain 1vr0A in template set Warning: unaligning (T0547)K283 (1vr0A)Y148 because L (left) conformation "forbidden" or filtered. T0547 281 :QF 1vr0A 146 :GT T0547 284 :NEKSRN 1vr0A 149 :GEFSID Number of specific fragments extracted= 2 number of extra gaps= 1 total=66561 # 1v2zA.281.78 read from T0547.t04.many.frag # found chain 1v2zA in training set T0547 281 :QFKNEKSRN 1v2zA 251 :GRSEDILLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66562 # 2bkxA.281.70 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)K286 (2bkxA)D76 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QFKNE 2bkxA 71 :GLSSD T0547 287 :SRN 2bkxA 77 :PNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=66564 # 1zdyA.281.122 read from T0547.t04.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)N289 (1zdyA)G131 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QFKNEKSR 1zdyA 123 :FFPTDNMP Number of specific fragments extracted= 1 number of extra gaps= 1 total=66565 # 1ijbA.281.125 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 281 :QFKNEKSRN 1ijbA 625 :QEPQRMSRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=66566 # 1v0dA.281.146 read from T0547.t04.many.frag # found chain 1v0dA in template set Warning: unaligning (T0547)Q281 (1v0dA)G147 because T (delta_L) conformation "forbidden" or filtered. T0547 282 :FKNEKSRN 1v0dA 148 :LESRFRNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=66567 # 2cu6A.281.48 read from T0547.t04.many.frag # found chain 2cu6A in template set Warning: unaligning (T0547)K286 (2cu6A)C54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (2cu6A)H57 because E (beta_S) conformation "forbidden" or filtered. T0547 281 :QFKNE 2cu6A 49 :LTTPG T0547 287 :SR 2cu6A 55 :PL Number of specific fragments extracted= 2 number of extra gaps= 2 total=66569 # 1x38A.281.435 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)S287 (1x38A)T442 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1x38A)V443 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1x38A)G444 because Y (epsilon') conformation "forbidden" or filtered. T0547 281 :QFKNEK 1x38A 436 :GDTGRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=66570 # 1e58A.281.141 read from T0547.t04.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)N289 (1e58A)T150 because Y (epsilon') conformation "forbidden" or filtered. T0547 281 :QFKNEKSR 1e58A 142 :LSEKELPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=66571 # 1m2oA.281.250 read from T0547.t04.many.frag # found chain 1m2oA in template set T0547 281 :QFKNEKSRN 1m2oA 251 :SVPAGHRPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66572 # 1ryoA.281.137 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)N284 (1ryoA)E141 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1ryoA)P142 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1ryoA)P145 because C (cis) conformation "forbidden" or filtered. T0547 281 :QFK 1ryoA 138 :DLP T0547 286 :KS 1ryoA 143 :RK T0547 289 :N 1ryoA 146 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=66575 # 1i88A.281.317 read from T0547.t04.many.frag # found chain 1i88A in training set T0547 281 :QFKNEKSRN 1i88A 318 :ALKPEKMNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66576 # 1pcxA.281.296 read from T0547.t04.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)N289 (1pcxA)N421 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QFKNEKSR 1pcxA 413 :IFQSNLIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=66577 # 1jhjA.281.0 read from T0547.t04.many.frag # found chain 1jhjA in training set Warning: unaligning (T0547)Q281 because first residue in template chain is (1jhjA)A2 T0547 282 :FKNEKSRN 1jhjA 3 :TPNKTPPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=66578 # 1nofA.281.137 read from T0547.t04.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)E285 (1nofA)Y172 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1nofA)S174 because Y (epsilon') conformation "forbidden" or filtered. T0547 281 :QFKN 1nofA 168 :WKPD T0547 286 :K 1nofA 173 :E T0547 288 :RN 1nofA 175 :CE Number of specific fragments extracted= 3 number of extra gaps= 2 total=66581 1q42A expands to /projects/compbio/data/pdb/1q42.pdb.gz 1q42A:# 1q42A.281.44 read from T0547.t04.many.frag # adding 1q42A to template set # found chain 1q42A in template set T0547 281 :QFKNEKSRN 1q42A 25 :TQPTSQPFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=66582 # 1y2qA.281.82 read from T0547.t04.many.frag # found chain 1y2qA in template set Warning: unaligning (T0547)K283 (1y2qA)S85 because Y (epsilon') conformation "forbidden" or filtered. T0547 281 :QF 1y2qA 83 :HL T0547 284 :NEKSRN 1y2qA 86 :SELAKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=66584 # 1dwkA.281.82 read from T0547.t04.many.frag # found chain 1dwkA in training set Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE in next template residue (1dwkA)R87 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE at template residue (1dwkA)R87 Warning: unaligning (T0547)N289 (1dwkA)D91 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QFK 1dwkA 83 :CID T0547 286 :KSR 1dwkA 88 :IPT Number of specific fragments extracted= 2 number of extra gaps= 2 total=66586 # 1m65A.281.212 read from T0547.t04.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)Q281 (1m65A)D213 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1m65A)P215 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :F 1m65A 214 :F T0547 284 :NEKSRN 1m65A 216 :PERILN Number of specific fragments extracted= 2 number of extra gaps= 2 total=66588 # 1y0zA.281.183 read from T0547.t04.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)K286 (1y0zA)S189 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QFKNE 1y0zA 184 :DDDPS T0547 287 :SRN 1y0zA 190 :PIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=66590 # 1obfO.281.140 read from T0547.t04.many.frag # found chain 1obfO in template set Warning: unaligning (T0547)K286 (1obfO)D146 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QFKNE 1obfO 141 :TLKST T0547 287 :SRN 1obfO 147 :TVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=66592 # 2erbA.281.63 read from T0547.t04.many.frag # found chain 2erbA in training set T0547 281 :QFKNEKSRN 2erbA 64 :VVDDNGDVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=66593 # 1c8nA.281.210 read from T0547.t04.many.frag # found chain 1c8nA in template set T0547 281 :QFKNEKSRN 1c8nA 211 :RFDKAWYST Number of specific fragments extracted= 1 number of extra gaps= 0 total=66594 # 4dpvZ.282.235 read from T0547.t04.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)S287 (4dpvZ)V241 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :FKNEK 4dpvZ 236 :TDPDD T0547 288 :RNY 4dpvZ 242 :QFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=66596 # 2bnxA.282.61 read from T0547.t04.many.frag # found chain 2bnxA in template set T0547 282 :FKNEKSRNY 2bnxA 192 :EKEETSGNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=66597 # 1efpB.282.87 read from T0547.t04.many.frag # found chain 1efpB in template set T0547 282 :FKNEKSRNY 1efpB 88 :AADDVQQDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66598 # 1pcxA.282.297 read from T0547.t04.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)K286 (1pcxA)L418 because G (3-10) conformation "forbidden" or filtered. T0547 282 :FKNE 1pcxA 414 :FQSN T0547 287 :SRNY 1pcxA 419 :ITNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=66600 # 1e58A.282.142 read from T0547.t04.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)N289 (1e58A)T150 because Y (epsilon') conformation "forbidden" or filtered. T0547 282 :FKNEKSR 1e58A 143 :SEKELPL T0547 290 :Y 1e58A 151 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=66602 # 1w5rA.282.101 read from T0547.t04.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)K283 (1w5rA)A100 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :F 1w5rA 99 :R T0547 284 :NEKSRNY 1w5rA 101 :DDAPLPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=66604 # 1lxjA.282.82 read from T0547.t04.many.frag # found chain 1lxjA in training set Warning: unaligning (T0547)S287 (1lxjA)H88 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :FKNEK 1lxjA 83 :TRTDK T0547 288 :RNY 1lxjA 89 :QTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=66606 # 1vr0A.282.158 read from T0547.t04.many.frag # found chain 1vr0A in template set Warning: unaligning (T0547)K283 (1vr0A)Y148 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1vr0A)G149 because L (left) conformation "forbidden" or filtered. T0547 282 :F 1vr0A 147 :T T0547 285 :EKSRNY 1vr0A 150 :EFSIDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=66608 # 2bkxA.282.71 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)R288 (2bkxA)N78 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (2bkxA)S79 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :FKNEKS 2bkxA 72 :LSSDDP T0547 290 :Y 2bkxA 80 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=66610 # 2cu6A.282.49 read from T0547.t04.many.frag # found chain 2cu6A in template set T0547 282 :FKNEKSRNY 2cu6A 50 :TTPGCPLHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66611 # 1k78A.282.123 read from T0547.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0547)N289 (1k78A)S131 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :FKNEKSR 1k78A 124 :CDNDTVP T0547 290 :Y 1k78A 132 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=66613 # 1jb7B.282.30 read from T0547.t04.many.frag # found chain 1jb7B in template set T0547 282 :FKNEKSRNY 1jb7B 31 :VSSNLKKPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66614 # 1m2oA.282.251 read from T0547.t04.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)E285 (1m2oA)G255 because L (left) conformation "forbidden" or filtered. T0547 282 :FKN 1m2oA 252 :VPA T0547 286 :KSRNY 1m2oA 256 :HRPLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=66616 # 1v2zA.282.79 read from T0547.t04.many.frag # found chain 1v2zA in training set T0547 282 :FKNEKSRNY 1v2zA 252 :RSEDILLDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=66617 # 1ijbA.282.126 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 282 :FKNEKSRNY 1ijbA 626 :EPQRMSRNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=66618 # 1x38A.282.436 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)N284 (1x38A)G439 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1x38A)T442 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1x38A)G444 because Y (epsilon') conformation "forbidden" or filtered. T0547 282 :FK 1x38A 437 :DT T0547 285 :EK 1x38A 440 :RT T0547 288 :R 1x38A 443 :V T0547 290 :Y 1x38A 445 :T Number of specific fragments extracted= 4 number of extra gaps= 3 total=66622 # 1jhjA.282.1 read from T0547.t04.many.frag # found chain 1jhjA in training set T0547 282 :FKNEKSRNY 1jhjA 3 :TPNKTPPGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66623 # 1dwkA.282.83 read from T0547.t04.many.frag # found chain 1dwkA in training set Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE in next template residue (1dwkA)R87 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE at template residue (1dwkA)R87 T0547 282 :FK 1dwkA 84 :ID T0547 286 :KSRNY 1dwkA 88 :IPTDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=66625 # 1nofA.282.138 read from T0547.t04.many.frag # found chain 1nofA in training set T0547 282 :FKNEKSRNY 1nofA 169 :KPDYESCEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=66626 # 1iu4A.282.43 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)F282 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1iu4A)R45 Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1iu4A)R45 Warning: unaligning (T0547)N284 (1iu4A)D46 because L (left) conformation "forbidden" or filtered. T0547 285 :EKSRNY 1iu4A 47 :GRKQQM Number of specific fragments extracted= 1 number of extra gaps= 1 total=66627 # 2amdA.282.48 read from T0547.t04.many.frag # found chain 2amdA in template set T0547 282 :FKNEKSRNY 2amdA 44 :CTAEDMLNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=66628 # 1knwA.282.232 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N284 (1knwA)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 282 :FK 1knwA 233 :QQ T0547 285 :EKSRNY 1knwA 236 :EEAVDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=66630 1l8wA expands to /projects/compbio/data/pdb/1l8w.pdb.gz 1l8wA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1l8wA.282.142 read from T0547.t04.many.frag # adding 1l8wA to template set # found chain 1l8wA in template set Warning: unaligning (T0547)K283 (1l8wA)D152 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :F 1l8wA 151 :A T0547 284 :NEKSRNY 1l8wA 153 :ADAAKVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=66632 # 1q42A.282.45 read from T0547.t04.many.frag # found chain 1q42A in template set T0547 282 :FKNEKSRNY 1q42A 26 :QPTSQPFPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=66633 # 1y0zA.282.184 read from T0547.t04.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)R288 (1y0zA)I191 because D (zeta) conformation "forbidden" or filtered. T0547 282 :FKNEKS 1y0zA 185 :DDPSSP T0547 289 :NY 1y0zA 192 :GR Number of specific fragments extracted= 2 number of extra gaps= 1 total=66635 # 1zdyA.282.123 read from T0547.t04.many.frag # found chain 1zdyA in training set T0547 282 :FKNEKSRNY 1zdyA 124 :FPTDNMPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66636 # 1kxu.282.49 read from T0547.t04.many.frag # found chain 1kxu in template set Warning: unaligning (T0547)K283 (1kxu)L41 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :F 1kxu 40 :V T0547 284 :NEKSRNY 1kxu 42 :PNDPVFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66638 # 1wer.282.117 read from T0547.t04.many.frag # found chain 1wer in training set Warning: unaligning (T0547)R288 because of BadResidue code BAD_PEPTIDE in next template residue (1wer)N838 Warning: unaligning (T0547)N289 because of BadResidue code BAD_PEPTIDE at template residue (1wer)N838 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE at template residue (1wer)E839 T0547 282 :FKNEKS 1wer 831 :SPSKLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=66639 # 1y2qA.282.83 read from T0547.t04.many.frag # found chain 1y2qA in template set Warning: unaligning (T0547)K283 (1y2qA)S85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1y2qA)E87 because N (gamma') conformation "forbidden" or filtered. T0547 282 :F 1y2qA 84 :L T0547 284 :N 1y2qA 86 :S T0547 286 :KSRNY 1y2qA 88 :LAKPS Number of specific fragments extracted= 3 number of extra gaps= 2 total=66642 # 1m65A.282.213 read from T0547.t04.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)K283 (1m65A)P215 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1m65A)N221 because G (3-10) conformation "forbidden" or filtered. T0547 282 :F 1m65A 214 :F T0547 284 :NEKSR 1m65A 216 :PERIL T0547 290 :Y 1m65A 222 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=66645 # 4dpvZ.283.236 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 283 :KNEKSRNYT 4dpvZ 237 :DPDDVQFYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=66646 # 1pcxA.283.298 read from T0547.t04.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)N289 (1pcxA)N421 because P (beta_P) conformation "forbidden" or filtered. T0547 283 :KNEKSR 1pcxA 415 :QSNLIT T0547 290 :YT 1pcxA 422 :FA Number of specific fragments extracted= 2 number of extra gaps= 1 total=66648 # 1e58A.283.143 read from T0547.t04.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)N289 (1e58A)T150 because Y (epsilon') conformation "forbidden" or filtered. T0547 283 :KNEKSR 1e58A 144 :EKELPL T0547 290 :YT 1e58A 151 :ES Number of specific fragments extracted= 2 number of extra gaps= 1 total=66650 # 2bnxA.283.62 read from T0547.t04.many.frag # found chain 2bnxA in template set Warning: unaligning (T0547)K286 (2bnxA)T196 because G (3-10) conformation "forbidden" or filtered. T0547 283 :KNE 2bnxA 193 :KEE T0547 287 :SRNYT 2bnxA 197 :SGNYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=66652 # 1efpB.283.88 read from T0547.t04.many.frag # found chain 1efpB in template set Warning: unaligning (T0547)K283 (1efpB)A89 because E (beta_S) conformation "forbidden" or filtered. T0547 284 :NEKSRNYT 1efpB 90 :DDVQQDIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=66653 # 1m2oA.283.252 read from T0547.t04.many.frag # found chain 1m2oA in template set T0547 283 :KNEKSRNYT 1m2oA 253 :PAGHRPLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66654 # 2amdA.283.49 read from T0547.t04.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)N289 (2amdA)N51 because D (zeta) conformation "forbidden" or filtered. T0547 283 :KNEKSR 2amdA 45 :TAEDML T0547 290 :YT 2amdA 52 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=66656 # 1wer.283.118 read from T0547.t04.many.frag # found chain 1wer in training set Warning: unaligning (T0547)R288 because of BadResidue code BAD_PEPTIDE in next template residue (1wer)N838 Warning: unaligning (T0547)N289 because of BadResidue code BAD_PEPTIDE at template residue (1wer)N838 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE at template residue (1wer)E839 T0547 283 :KNEKS 1wer 832 :PSKLE T0547 291 :T 1wer 840 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=66658 # 1lxjA.283.83 read from T0547.t04.many.frag # found chain 1lxjA in training set T0547 283 :KNEKSRNYT 1lxjA 84 :RTDKHQTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=66659 # 2cu6A.283.50 read from T0547.t04.many.frag # found chain 2cu6A in template set T0547 283 :KNEKSRNYT 2cu6A 51 :TPGCPLHDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=66660 # 1w5rA.283.102 read from T0547.t04.many.frag # found chain 1w5rA in training set T0547 283 :KNEKSRNYT 1w5rA 100 :ADDAPLPAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=66661 # 1dwkA.283.84 read from T0547.t04.many.frag # found chain 1dwkA in training set Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE in next template residue (1dwkA)R87 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE at template residue (1dwkA)R87 T0547 283 :K 1dwkA 85 :D T0547 286 :KSRNYT 1dwkA 88 :IPTDPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=66663 # 1jhjA.283.2 read from T0547.t04.many.frag # found chain 1jhjA in training set T0547 283 :KNEKSRNYT 1jhjA 4 :PNKTPPGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66664 # 1p0yA.283.155 read from T0547.t04.many.frag # found chain 1p0yA in template set T0547 283 :KNEKSRNYT 1p0yA 200 :KRLFPDPVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=66665 # 1xg4A.283.211 read from T0547.t04.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)K283 (1xg4A)E213 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1xg4A)G215 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1xg4A)A216 because G (3-10) conformation "forbidden" or filtered. T0547 284 :N 1xg4A 214 :F T0547 287 :SRNYT 1xg4A 217 :TPLFT Number of specific fragments extracted= 2 number of extra gaps= 2 total=66667 # 1ijbA.283.127 read from T0547.t04.many.frag # found chain 1ijbA in training set Warning: unaligning (T0547)K286 (1ijbA)M630 because G (3-10) conformation "forbidden" or filtered. T0547 283 :KNE 1ijbA 627 :PQR T0547 287 :SRNYT 1ijbA 631 :SRNFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=66669 # 1vr0A.283.159 read from T0547.t04.many.frag # found chain 1vr0A in template set Warning: unaligning (T0547)K283 (1vr0A)Y148 because L (left) conformation "forbidden" or filtered. T0547 284 :NEKSRNYT 1vr0A 149 :GEFSIDDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=66670 # 2bkxA.283.72 read from T0547.t04.many.frag # found chain 2bkxA in training set T0547 283 :KNEKSRNYT 2bkxA 73 :SSDDPNSYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=66671 # 1nofA.283.139 read from T0547.t04.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)E285 (1nofA)Y172 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1nofA)S174 because Y (epsilon') conformation "forbidden" or filtered. T0547 283 :KN 1nofA 170 :PD T0547 286 :K 1nofA 173 :E T0547 288 :RNYT 1nofA 175 :CEWS Number of specific fragments extracted= 3 number of extra gaps= 2 total=66674 # 1x38A.283.437 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)N284 (1x38A)G439 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1x38A)T442 because Y (epsilon') conformation "forbidden" or filtered. T0547 283 :K 1x38A 438 :T T0547 285 :EK 1x38A 440 :RT T0547 288 :RNYT 1x38A 443 :VGTT Number of specific fragments extracted= 3 number of extra gaps= 2 total=66677 # 1q42A.283.46 read from T0547.t04.many.frag # found chain 1q42A in template set Warning: unaligning (T0547)K283 (1q42A)P27 because P (beta_P) conformation "forbidden" or filtered. T0547 284 :NEKSRNYT 1q42A 28 :TSQPFPNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=66678 # 1y0zA.283.185 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 283 :KNEKSRNYT 1y0zA 186 :DPSSPIGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=66679 # 1kxu.283.50 read from T0547.t04.many.frag # found chain 1kxu in template set T0547 283 :KNEKSRNYT 1kxu 41 :LPNDPVFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66680 # 1sw5B.283.72 read from T0547.t04.many.frag # found chain 1sw5B in template set Warning: unaligning (T0547)N284 (1sw5B)K74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1sw5B)Q75 because P (beta_P) conformation "forbidden" or filtered. T0547 283 :K 1sw5B 73 :R T0547 286 :KSRNYT 1sw5B 76 :PPELWD Number of specific fragments extracted= 2 number of extra gaps= 1 total=66682 1qcsA expands to /projects/compbio/data/pdb/1qcs.pdb.gz 1qcsA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1qcsA.283.108 read from T0547.t04.many.frag # adding 1qcsA to template set # found chain 1qcsA in template set Warning: unaligning (T0547)K286 (1qcsA)D108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1qcsA)P111 because P (beta_P) conformation "forbidden" or filtered. T0547 283 :KNE 1qcsA 105 :KNI T0547 287 :SR 1qcsA 109 :SN T0547 290 :YT 1qcsA 112 :YD Number of specific fragments extracted= 3 number of extra gaps= 2 total=66685 # 1ezwA.283.117 read from T0547.t04.many.frag # found chain 1ezwA in training set T0547 283 :KNEKSRNYT 1ezwA 118 :NPEAEDEVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=66686 # 1v6sA.283.60 read from T0547.t04.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)E285 (1v6sA)G63 because S (epsilon) conformation "forbidden" or filtered. T0547 283 :KN 1v6sA 61 :PK T0547 286 :KSRNYT 1v6sA 64 :PDPKYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=66688 # 1iu4A.283.44 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1iu4A)R45 Warning: unaligning (T0547)R288 (1iu4A)Q50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1iu4A)E54 T0547 284 :NEKS 1iu4A 46 :DGRK T0547 289 :NY 1iu4A 51 :QM Number of specific fragments extracted= 2 number of extra gaps= 3 total=66690 # 1l8wA.283.143 read from T0547.t04.many.frag # found chain 1l8wA in template set Warning: unaligning (T0547)K283 (1l8wA)D152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1l8wA)K157 because Y (epsilon') conformation "forbidden" or filtered. T0547 284 :NEKS 1l8wA 153 :ADAA T0547 289 :NYT 1l8wA 158 :VAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=66692 # 1zaiA.283.235 read from T0547.t04.many.frag # found chain 1zaiA in training set T0547 283 :KNEKSRNYT 1zaiA 236 :GHACTQKYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=66693 # 1pcxA.284.299 read from T0547.t04.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)R288 (1pcxA)T420 because G (3-10) conformation "forbidden" or filtered. T0547 284 :NEKS 1pcxA 416 :SNLI T0547 289 :NYTL 1pcxA 421 :NFAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66695 # 2amdA.284.50 read from T0547.t04.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)K286 (2amdA)D48 because N (gamma') conformation "forbidden" or filtered. T0547 284 :NE 2amdA 46 :AE T0547 287 :SRNYTL 2amdA 49 :MLNPNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=66697 # 4dpvZ.284.237 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 284 :NEKSRNYTL 4dpvZ 238 :PDDVQFYTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66698 # 1e58A.284.144 read from T0547.t04.many.frag # found chain 1e58A in training set T0547 284 :NEKSRNYTL 1e58A 145 :KELPLTESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66699 # 1m2oA.284.253 read from T0547.t04.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)N284 (1m2oA)A254 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1m2oA)G255 because L (left) conformation "forbidden" or filtered. T0547 286 :KSRNYTL 1m2oA 256 :HRPLRAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=66700 # 1wer.284.119 read from T0547.t04.many.frag # found chain 1wer in training set Warning: unaligning (T0547)S287 (1wer)E836 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 because of BadResidue code BAD_PEPTIDE in next template residue (1wer)N838 Warning: unaligning (T0547)N289 because of BadResidue code BAD_PEPTIDE at template residue (1wer)N838 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE at template residue (1wer)E839 T0547 284 :NEK 1wer 833 :SKL T0547 291 :TL 1wer 840 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=66702 # 1efpB.284.89 read from T0547.t04.many.frag # found chain 1efpB in template set T0547 284 :NEKSRNYTL 1efpB 90 :DDVQQDIEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=66703 # 2cu6A.284.51 read from T0547.t04.many.frag # found chain 2cu6A in template set Warning: unaligning (T0547)N284 (2cu6A)P52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (2cu6A)G53 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (2cu6A)C54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (2cu6A)P55 because P (beta_P) conformation "forbidden" or filtered. T0547 288 :RNYTL 2cu6A 56 :LHDSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=66704 # 1zaiA.284.236 read from T0547.t04.many.frag # found chain 1zaiA in training set T0547 284 :NEKSRNYTL 1zaiA 237 :HACTQKYSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=66705 # 2bnxA.284.63 read from T0547.t04.many.frag # found chain 2bnxA in template set T0547 284 :NEKSRNYTL 2bnxA 194 :EETSGNYDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=66706 # 1xg4A.284.212 read from T0547.t04.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)E285 (1xg4A)G215 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1xg4A)T217 because P (beta_P) conformation "forbidden" or filtered. T0547 284 :N 1xg4A 214 :F T0547 286 :K 1xg4A 216 :A T0547 288 :RNYTL 1xg4A 218 :PLFTT Number of specific fragments extracted= 3 number of extra gaps= 2 total=66709 # 1dwkA.284.85 read from T0547.t04.many.frag # found chain 1dwkA in training set Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE in next template residue (1dwkA)R87 Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE at template residue (1dwkA)R87 T0547 286 :KSRNYTL 1dwkA 88 :IPTDPTM Number of specific fragments extracted= 1 number of extra gaps= 1 total=66710 # 1p0yA.284.156 read from T0547.t04.many.frag # found chain 1p0yA in template set T0547 284 :NEKSRNYTL 1p0yA 201 :RLFPDPVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66711 1h6pA expands to /projects/compbio/data/pdb/1h6p.pdb.gz 1h6pA:# 1h6pA.284.163 read from T0547.t04.many.frag # adding 1h6pA to template set # found chain 1h6pA in template set Warning: unaligning (T0547)S287 (1h6pA)I209 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1h6pA)N211 because D (zeta) conformation "forbidden" or filtered. T0547 284 :NEK 1h6pA 206 :HPV T0547 288 :R 1h6pA 210 :Q T0547 290 :YTL 1h6pA 212 :FSY Number of specific fragments extracted= 3 number of extra gaps= 2 total=66714 1uh4A expands to /projects/compbio/data/pdb/1uh4.pdb.gz 1uh4A:Skipped atom 2140, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 2142, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 2259, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 2261, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 2263, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 2265, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3014, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3016, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3145, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3147, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3149, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3151, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3153, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3462, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3464, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3466, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3468, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3837, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3839, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 4937, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 4939, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 4941, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 4943, because occupancy 0.500 <= existing 0.500 in 1uh4A # 1uh4A.284.433 read from T0547.t04.many.frag # adding 1uh4A to template set # found chain 1uh4A in template set Warning: unaligning (T0547)E285 (1uh4A)N435 because L (left) conformation "forbidden" or filtered. T0547 284 :N 1uh4A 434 :Q T0547 286 :KSRNYTL 1uh4A 436 :NSASIST Number of specific fragments extracted= 2 number of extra gaps= 1 total=66716 # 1q0rA.284.68 read from T0547.t04.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)N284 (1q0rA)D69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1q0rA)P74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y290 (1q0rA)Y75 because Y (epsilon') conformation "forbidden" or filtered. T0547 285 :EKSR 1q0rA 70 :FAAH T0547 291 :TL 1q0rA 76 :GF Number of specific fragments extracted= 2 number of extra gaps= 2 total=66718 # 1sw5B.284.73 read from T0547.t04.many.frag # found chain 1sw5B in template set Warning: unaligning (T0547)N284 (1sw5B)K74 because P (beta_P) conformation "forbidden" or filtered. T0547 285 :EKSRNYTL 1sw5B 75 :QPPELWDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=66719 # 1x38A.284.438 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)N284 (1x38A)G439 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1x38A)T442 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1x38A)G444 because Y (epsilon') conformation "forbidden" or filtered. T0547 285 :EK 1x38A 440 :RT T0547 288 :R 1x38A 443 :V T0547 290 :YTL 1x38A 445 :TTI Number of specific fragments extracted= 3 number of extra gaps= 3 total=66722 # 1nofA.284.140 read from T0547.t04.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)S287 (1nofA)S174 because Y (epsilon') conformation "forbidden" or filtered. T0547 284 :NEK 1nofA 171 :DYE T0547 288 :RNYTL 1nofA 175 :CEWSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=66724 # 1jhjA.284.3 read from T0547.t04.many.frag # found chain 1jhjA in training set T0547 284 :NEKSRNYTL 1jhjA 5 :NKTPPGADP Number of specific fragments extracted= 1 number of extra gaps= 0 total=66725 # 1nuuA.284.193 read from T0547.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0547)R288 (1nuuA)N198 because D (zeta) conformation "forbidden" or filtered. T0547 284 :NEKS 1nuuA 194 :EPVQ T0547 289 :NYTL 1nuuA 199 :EISA Number of specific fragments extracted= 2 number of extra gaps= 1 total=66727 # 1qcsA.284.109 read from T0547.t04.many.frag # found chain 1qcsA in template set Warning: unaligning (T0547)K286 (1qcsA)D108 because Y (epsilon') conformation "forbidden" or filtered. T0547 284 :NE 1qcsA 106 :NI T0547 287 :SRNYTL 1qcsA 109 :SNPYDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=66729 # 1ymtA.284.228 read from T0547.t04.many.frag # found chain 1ymtA in training set Warning: unaligning (T0547)R288 (1ymtA)R449 because P (beta_P) conformation "forbidden" or filtered. T0547 284 :NEKS 1ymtA 445 :NEMP T0547 289 :NYTL 1ymtA 450 :NNLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66731 # 1v6sA.284.61 read from T0547.t04.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)Y290 (1v6sA)Y68 because G (3-10) conformation "forbidden" or filtered. T0547 284 :NEKSRN 1v6sA 62 :KGPDPK T0547 291 :TL 1v6sA 69 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66733 # 1q42A.284.46 read from T0547.t04.many.frag # found chain 1q42A in template set T0547 284 :NEKSRNYTL 1q42A 27 :PTSQPFPNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66734 # 1w5rA.284.103 read from T0547.t04.many.frag # found chain 1w5rA in training set T0547 284 :NEKSRNYTL 1w5rA 101 :DDAPLPAQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=66735 # 1lw7A.284.138 read from T0547.t04.many.frag # found chain 1lw7A in template set Warning: unaligning (T0547)E285 (1lw7A)R196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1lw7A)F199 because L (left) conformation "forbidden" or filtered. T0547 284 :N 1lw7A 195 :D T0547 286 :KS 1lw7A 197 :TF T0547 289 :NYTL 1lw7A 200 :NVSA Number of specific fragments extracted= 3 number of extra gaps= 2 total=66738 # 1zedA.284.402 read from T0547.t04.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)E285 (1zedA)G404 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1zedA)A405 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1zedA)R406 because P (beta_P) conformation "forbidden" or filtered. T0547 284 :N 1zedA 403 :D T0547 288 :RNYTL 1zedA 407 :PDVTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66740 # 1dekA.284.67 read from T0547.t04.many.frag # found chain 1dekA in template set Warning: unaligning (T0547)N289 (1dekA)N73 because L (left) conformation "forbidden" or filtered. T0547 284 :NEKSR 1dekA 68 :RETNL T0547 290 :YTL 1dekA 74 :LTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=66742 # 1y0zA.284.186 read from T0547.t04.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)N289 (1y0zA)G192 because G (3-10) conformation "forbidden" or filtered. T0547 284 :NEKSR 1y0zA 187 :PSSPI T0547 290 :YTL 1y0zA 193 :RGW Number of specific fragments extracted= 2 number of extra gaps= 1 total=66744 # 1pcxA.285.300 read from T0547.t04.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)S287 (1pcxA)I419 because P (beta_P) conformation "forbidden" or filtered. T0547 285 :EK 1pcxA 417 :NL T0547 288 :RNYTLR 1pcxA 420 :TNFALG Number of specific fragments extracted= 2 number of extra gaps= 1 total=66746 # 2amdA.285.51 read from T0547.t04.many.frag # found chain 2amdA in template set T0547 285 :EKSRNYTLR 2amdA 47 :EDMLNPNYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66747 # 1q0rA.285.69 read from T0547.t04.many.frag # found chain 1q0rA in training set T0547 285 :EKSRNYTLR 1q0rA 70 :FAAHPYGFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=66748 # 1e58A.285.145 read from T0547.t04.many.frag # found chain 1e58A in training set T0547 285 :EKSRNYTLR 1e58A 146 :ELPLTESLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66749 # 1m2oA.285.254 read from T0547.t04.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)E285 (1m2oA)G255 because L (left) conformation "forbidden" or filtered. T0547 286 :KSRNYTLR 1m2oA 256 :HRPLRATG Number of specific fragments extracted= 1 number of extra gaps= 1 total=66750 # 1zaiA.285.237 read from T0547.t04.many.frag # found chain 1zaiA in training set T0547 285 :EKSRNYTLR 1zaiA 238 :ACTQKYSHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66751 # 4dpvZ.285.238 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 285 :EKSRNYTLR 4dpvZ 239 :DDVQFYTIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66752 # 1xg4A.285.213 read from T0547.t04.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)E285 (1xg4A)G215 because Y (epsilon') conformation "forbidden" or filtered. T0547 286 :KSRNYTLR 1xg4A 216 :ATPLFTTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=66753 # 1h6pA.285.164 read from T0547.t04.many.frag # found chain 1h6pA in template set Warning: unaligning (T0547)K286 (1h6pA)V208 because N (gamma') conformation "forbidden" or filtered. T0547 285 :E 1h6pA 207 :P T0547 287 :SRNYTLR 1h6pA 209 :IQNFSYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66755 # 1wer.285.120 read from T0547.t04.many.frag # found chain 1wer in training set Warning: unaligning (T0547)R288 because of BadResidue code BAD_PEPTIDE in next template residue (1wer)N838 Warning: unaligning (T0547)N289 because of BadResidue code BAD_PEPTIDE at template residue (1wer)N838 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE at template residue (1wer)E839 T0547 285 :EKS 1wer 834 :KLE T0547 291 :TLR 1wer 840 :DVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=66757 # 1uh4A.285.434 read from T0547.t04.many.frag # found chain 1uh4A in template set T0547 285 :EKSRNYTLR 1uh4A 435 :NNSASISTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=66758 # 1sw5B.285.74 read from T0547.t04.many.frag # found chain 1sw5B in template set T0547 285 :EKSRNYTLR 1sw5B 75 :QPPELWDQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=66759 # 1efpB.285.90 read from T0547.t04.many.frag # found chain 1efpB in template set T0547 285 :EKSRNYTLR 1efpB 91 :DVQQDIEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66760 # 2cu6A.285.52 read from T0547.t04.many.frag # found chain 2cu6A in template set Warning: unaligning (T0547)K286 (2cu6A)C54 because P (beta_P) conformation "forbidden" or filtered. T0547 285 :E 2cu6A 53 :G T0547 287 :SRNYTLR 2cu6A 55 :PLHDSLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=66762 # 1p0yA.285.157 read from T0547.t04.many.frag # found chain 1p0yA in template set T0547 285 :EKSRNYTLR 1p0yA 202 :LFPDPVTLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66763 # 1ryp2.285.81 read from T0547.t04.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0547)K286 (1ryp2)A75 because Y (epsilon') conformation "forbidden" or filtered. T0547 285 :E 1ryp2 74 :D T0547 287 :SRNYTLR 1ryp2 76 :EEALEPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=66765 # 2c0hA.285.190 read from T0547.t04.many.frag # found chain 2c0hA in training set Warning: unaligning (T0547)S287 (2c0hA)G207 because Y (epsilon') conformation "forbidden" or filtered. T0547 285 :EK 2c0hA 205 :WA T0547 288 :RNYTLR 2c0hA 208 :HLYSAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=66767 # 1v6sA.285.62 read from T0547.t04.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)E285 (1v6sA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1v6sA)D65 because P (beta_P) conformation "forbidden" or filtered. T0547 286 :K 1v6sA 64 :P T0547 288 :RNYTLR 1v6sA 66 :PKYSLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=66769 # 1woqA.285.43 read from T0547.t04.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N289 (1woqA)P48 because C (cis) conformation "forbidden" or filtered. T0547 285 :EKSR 1woqA 44 :PTPQ T0547 290 :YTLR 1woqA 49 :ATPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66771 # 1dwkA.285.86 read from T0547.t04.many.frag # found chain 1dwkA in training set Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE at template residue (1dwkA)R87 T0547 286 :KSRNYTLR 1dwkA 88 :IPTDPTMY Number of specific fragments extracted= 1 number of extra gaps= 1 total=66772 # 1x38A.285.439 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)S287 (1x38A)T442 because Y (epsilon') conformation "forbidden" or filtered. T0547 285 :EK 1x38A 440 :RT T0547 288 :RNYTLR 1x38A 443 :VGTTIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66774 # 1o6dA.285.120 read from T0547.t04.many.frag # found chain 1o6dA in training set Warning: unaligning (T0547)K286 (1o6dA)S120 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1o6dA)M122 because P (beta_P) conformation "forbidden" or filtered. T0547 285 :E 1o6dA 119 :L T0547 287 :S 1o6dA 121 :K T0547 289 :NYTLR 1o6dA 123 :TFTHG Number of specific fragments extracted= 3 number of extra gaps= 2 total=66777 # 1gx5A.285.189 read from T0547.t04.many.frag # found chain 1gx5A in template set T0547 285 :EKSRNYTLR 1gx5A 190 :SYGFQYSPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=66778 # 1nuuA.285.194 read from T0547.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0547)E285 (1nuuA)P195 because N (gamma') conformation "forbidden" or filtered. T0547 286 :KSRNYTLR 1nuuA 196 :VQNEISAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=66779 # 1lw7A.285.139 read from T0547.t04.many.frag # found chain 1lw7A in template set Warning: unaligning (T0547)E285 (1lw7A)R196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1lw7A)F199 because L (left) conformation "forbidden" or filtered. T0547 286 :KS 1lw7A 197 :TF T0547 289 :NYTLR 1lw7A 200 :NVSAT Number of specific fragments extracted= 2 number of extra gaps= 2 total=66781 # 1o0sA.285.239 read from T0547.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)E285 (1o0sA)K240 because P (beta_P) conformation "forbidden" or filtered. T0547 286 :KSRNYTLR 1o0sA 241 :RVRGKDYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=66782 # 1dekA.285.68 read from T0547.t04.many.frag # found chain 1dekA in template set Warning: unaligning (T0547)R288 (1dekA)L72 because G (3-10) conformation "forbidden" or filtered. T0547 285 :EKS 1dekA 69 :ETN T0547 289 :NYTLR 1dekA 73 :NLTKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66784 # 1qcsA.285.110 read from T0547.t04.many.frag # found chain 1qcsA in template set Warning: unaligning (T0547)N289 (1qcsA)P111 because P (beta_P) conformation "forbidden" or filtered. T0547 285 :EKSR 1qcsA 107 :IDSN T0547 290 :YTLR 1qcsA 112 :YDTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=66786 # 1ycdA.285.78 read from T0547.t04.many.frag # found chain 1ycdA in training set T0547 285 :EKSRNYTLR 1ycdA 79 :EISHELDIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=66787 # 1cvrA.285.155 read from T0547.t04.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)R288 (1cvrA)N159 because L (left) conformation "forbidden" or filtered. T0547 285 :EKS 1cvrA 156 :SAD T0547 289 :NYTLR 1cvrA 160 :GESDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=66789 # 1pcxA.286.301 read from T0547.t04.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)N289 (1pcxA)N421 because P (beta_P) conformation "forbidden" or filtered. T0547 286 :KSR 1pcxA 418 :LIT T0547 290 :YTLRE 1pcxA 422 :FALGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=66791 # 1q0rA.286.70 read from T0547.t04.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)N289 (1q0rA)P74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y290 (1q0rA)Y75 because Y (epsilon') conformation "forbidden" or filtered. T0547 286 :KSR 1q0rA 71 :AAH T0547 291 :TLRE 1q0rA 76 :GFGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66793 # 2c0hA.286.191 read from T0547.t04.many.frag # found chain 2c0hA in training set Warning: unaligning (T0547)S287 (2c0hA)G207 because Y (epsilon') conformation "forbidden" or filtered. T0547 286 :K 2c0hA 206 :A T0547 288 :RNYTLRE 2c0hA 208 :HLYSAQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66795 # 1h6pA.286.165 read from T0547.t04.many.frag # found chain 1h6pA in template set Warning: unaligning (T0547)S287 (1h6pA)I209 because T (delta_L) conformation "forbidden" or filtered. T0547 286 :K 1h6pA 208 :V T0547 288 :RNYTLRE 1h6pA 210 :QNFSYET Number of specific fragments extracted= 2 number of extra gaps= 1 total=66797 # 1zaiA.286.238 read from T0547.t04.many.frag # found chain 1zaiA in training set T0547 286 :KSRNYTLRE 1zaiA 239 :CTQKYSHEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66798 # 1woqA.286.44 read from T0547.t04.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N289 (1woqA)P48 because C (cis) conformation "forbidden" or filtered. T0547 286 :KSR 1woqA 45 :TPQ T0547 290 :YTLRE 1woqA 49 :ATPES Number of specific fragments extracted= 2 number of extra gaps= 1 total=66800 # 1sw5B.286.75 read from T0547.t04.many.frag # found chain 1sw5B in template set T0547 286 :KSRNYTLRE 1sw5B 76 :PPELWDQQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=66801 # 2amdA.286.52 read from T0547.t04.many.frag # found chain 2amdA in template set T0547 286 :KSRNYTLRE 2amdA 48 :DMLNPNYED Number of specific fragments extracted= 1 number of extra gaps= 0 total=66802 # 1uh4A.286.435 read from T0547.t04.many.frag # found chain 1uh4A in template set T0547 286 :KSRNYTLRE 1uh4A 436 :NSASISTTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=66803 # 1xg4A.286.214 read from T0547.t04.many.frag # found chain 1xg4A in training set T0547 286 :KSRNYTLRE 1xg4A 216 :ATPLFTTDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66804 # 1wer.286.121 read from T0547.t04.many.frag # found chain 1wer in training set Warning: unaligning (T0547)S287 (1wer)E836 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 because of BadResidue code BAD_PEPTIDE in next template residue (1wer)N838 Warning: unaligning (T0547)N289 because of BadResidue code BAD_PEPTIDE at template residue (1wer)N838 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE at template residue (1wer)E839 T0547 286 :K 1wer 835 :L T0547 291 :TLRE 1wer 840 :DVNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=66806 # 1p0yA.286.158 read from T0547.t04.many.frag # found chain 1p0yA in template set T0547 286 :KSRNYTLRE 1p0yA 203 :FPDPVTLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66807 # 1musA.286.64 read from T0547.t04.many.frag # found chain 1musA in template set T0547 286 :KSRNYTLRE 1musA 65 :RNPNVSAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66808 # 1m2oA.286.255 read from T0547.t04.many.frag # found chain 1m2oA in template set T0547 286 :KSRNYTLRE 1m2oA 256 :HRPLRATGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=66809 # 1e58A.286.146 read from T0547.t04.many.frag # found chain 1e58A in training set T0547 286 :KSRNYTLRE 1e58A 147 :LPLTESLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66810 # 1vqoB.286.115 read from T0547.t04.many.frag # found chain 1vqoB in template set T0547 286 :KSRNYTLRE 1vqoB 115 :VPEDHDPDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66811 # 1sz7A.286.73 read from T0547.t04.many.frag # found chain 1sz7A in training set Warning: unaligning (T0547)S287 (1sz7A)G66 because S (epsilon) conformation "forbidden" or filtered. T0547 286 :K 1sz7A 65 :V T0547 288 :RNYTLRE 1sz7A 67 :RCHDFRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66813 # 4dpvZ.286.239 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 286 :KSRNYTLRE 4dpvZ 240 :DVQFYTIEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=66814 # 2c5uA.286.186 read from T0547.t04.many.frag # found chain 2c5uA in template set T0547 286 :KSRNYTLRE 2c5uA 186 :TGEYISYDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66815 # 1o6dA.286.121 read from T0547.t04.many.frag # found chain 1o6dA in training set Warning: unaligning (T0547)K286 (1o6dA)S120 because Y (epsilon') conformation "forbidden" or filtered. T0547 287 :SRNYTLRE 1o6dA 121 :KMTFTHGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=66816 # 1o0sA.286.240 read from T0547.t04.many.frag # found chain 1o0sA in template set T0547 286 :KSRNYTLRE 1o0sA 241 :RVRGKDYDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=66817 2bghA expands to /projects/compbio/data/pdb/2bgh.pdb.gz 2bghA:# 2bghA.286.49 read from T0547.t04.many.frag # adding 2bghA to template set # found chain 2bghA in template set Warning: unaligning (T0547)N289 (2bghA)N53 because D (zeta) conformation "forbidden" or filtered. T0547 286 :KSR 2bghA 50 :LDS T0547 290 :YTLRE 2bghA 54 :LDPAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=66819 # 1ryp2.286.82 read from T0547.t04.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0547)N289 (1ryp2)A78 because P (beta_P) conformation "forbidden" or filtered. T0547 286 :KSR 1ryp2 75 :AEE T0547 290 :YTLRE 1ryp2 79 :LEPSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=66821 # 1nuuA.286.195 read from T0547.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0547)R288 (1nuuA)N198 because D (zeta) conformation "forbidden" or filtered. T0547 286 :KS 1nuuA 196 :VQ T0547 289 :NYTLRE 1nuuA 199 :EISATY Number of specific fragments extracted= 2 number of extra gaps= 1 total=66823 # 1q9jA.286.293 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)N289 (1q9jA)N297 because G (3-10) conformation "forbidden" or filtered. T0547 286 :KSR 1q9jA 294 :IGP T0547 290 :YTLRE 1q9jA 298 :TDIVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=66825 # 1vjvA.286.119 read from T0547.t04.many.frag # found chain 1vjvA in training set Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vjvA)F204 T0547 287 :SRNYTLRE 1vjvA 205 :YKQQDAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66826 # 1gx5A.286.190 read from T0547.t04.many.frag # found chain 1gx5A in template set T0547 286 :KSRNYTLRE 1gx5A 191 :YGFQYSPGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=66827 # 1pi1A.286.73 read from T0547.t04.many.frag # found chain 1pi1A in template set Warning: unaligning (T0547)K286 (1pi1A)K84 because P (beta_P) conformation "forbidden" or filtered. T0547 287 :SRNYTLRE 1pi1A 85 :PIKCSAPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=66828 # 1ycdA.286.79 read from T0547.t04.many.frag # found chain 1ycdA in training set T0547 286 :KSRNYTLRE 1ycdA 80 :ISHELDISE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66829 # 1dekA.286.69 read from T0547.t04.many.frag # found chain 1dekA in template set Warning: unaligning (T0547)N289 (1dekA)N73 because L (left) conformation "forbidden" or filtered. T0547 286 :KSR 1dekA 70 :TNL T0547 290 :YTLRE 1dekA 74 :LTKLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=66831 # 2c0hA.287.192 read from T0547.t04.many.frag # found chain 2c0hA in training set T0547 287 :SRNYTLREY 2c0hA 207 :GHLYSAQEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66832 # 1woqA.287.45 read from T0547.t04.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N289 (1woqA)P48 because C (cis) conformation "forbidden" or filtered. T0547 287 :SR 1woqA 46 :PQ T0547 290 :YTLREY 1woqA 49 :ATPESV Number of specific fragments extracted= 2 number of extra gaps= 1 total=66834 # 1q0rA.287.71 read from T0547.t04.many.frag # found chain 1q0rA in training set T0547 287 :SRNYTLREY 1q0rA 72 :AHPYGFGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66835 # 1h6pA.287.166 read from T0547.t04.many.frag # found chain 1h6pA in template set T0547 287 :SRNYTLREY 1h6pA 209 :IQNFSYETF Number of specific fragments extracted= 1 number of extra gaps= 0 total=66836 # 1zaiA.287.239 read from T0547.t04.many.frag # found chain 1zaiA in training set T0547 287 :SRNYTLREY 1zaiA 240 :TQKYSHEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66837 # 1vjvA.287.120 read from T0547.t04.many.frag # found chain 1vjvA in training set Warning: unaligning (T0547)N289 (1vjvA)Q207 because P (beta_P) conformation "forbidden" or filtered. T0547 287 :SR 1vjvA 205 :YK T0547 290 :YTLREY 1vjvA 208 :QDAEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=66839 # 2bghA.287.50 read from T0547.t04.many.frag # found chain 2bghA in template set T0547 287 :SRNYTLREY 2bghA 51 :DSNLDPAQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=66840 # 1sw5B.287.76 read from T0547.t04.many.frag # found chain 1sw5B in template set T0547 287 :SRNYTLREY 1sw5B 77 :PELWDQQYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66841 # 1pcxA.287.302 read from T0547.t04.many.frag # found chain 1pcxA in template set T0547 287 :SRNYTLREY 1pcxA 419 :ITNFALGPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66842 # 1q9jA.287.294 read from T0547.t04.many.frag # found chain 1q9jA in template set T0547 287 :SRNYTLREY 1q9jA 295 :GPNTDIVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66843 # 1sz7A.287.74 read from T0547.t04.many.frag # found chain 1sz7A in training set T0547 287 :SRNYTLREY 1sz7A 66 :GRCHDFRET Number of specific fragments extracted= 1 number of extra gaps= 0 total=66844 # 1uh4A.287.436 read from T0547.t04.many.frag # found chain 1uh4A in template set T0547 287 :SRNYTLREY 1uh4A 437 :SASISTTQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=66845 # 1musA.287.65 read from T0547.t04.many.frag # found chain 1musA in template set Warning: unaligning (T0547)N289 (1musA)N68 because G (3-10) conformation "forbidden" or filtered. T0547 287 :SR 1musA 66 :NP T0547 290 :YTLREY 1musA 69 :VSAEAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=66847 # 1vqoB.287.116 read from T0547.t04.many.frag # found chain 1vqoB in template set T0547 287 :SRNYTLREY 1vqoB 116 :PEDHDPDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66848 # 1wer.287.122 read from T0547.t04.many.frag # found chain 1wer in training set Warning: unaligning (T0547)R288 because of BadResidue code BAD_PEPTIDE in next template residue (1wer)N838 Warning: unaligning (T0547)N289 because of BadResidue code BAD_PEPTIDE at template residue (1wer)N838 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE at template residue (1wer)E839 T0547 287 :S 1wer 836 :E T0547 291 :TLREY 1wer 840 :DVNTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=66850 # 1pi1A.287.74 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 287 :SRNYTLREY 1pi1A 85 :PIKCSAPKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=66851 # 1p0yA.287.159 read from T0547.t04.many.frag # found chain 1p0yA in template set Warning: unaligning (T0547)N289 (1p0yA)P206 because P (beta_P) conformation "forbidden" or filtered. T0547 287 :SR 1p0yA 204 :PD T0547 290 :YTLREY 1p0yA 207 :VTLDDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=66853 # 1gqiA.287.294 read from T0547.t04.many.frag # found chain 1gqiA in training set T0547 287 :SRNYTLREY 1gqiA 299 :GYGRDHAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=66854 # 1bu6O.287.43 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)N289 (1bu6O)E46 because E (beta_S) conformation "forbidden" or filtered. T0547 287 :SR 1bu6O 44 :WV T0547 290 :YTLREY 1bu6O 47 :HDPMEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=66856 # 1xg4A.287.215 read from T0547.t04.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)S287 (1xg4A)T217 because P (beta_P) conformation "forbidden" or filtered. T0547 288 :RNYTLREY 1xg4A 218 :PLFTTDEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=66857 # 1dekA.287.70 read from T0547.t04.many.frag # found chain 1dekA in template set T0547 287 :SRNYTLREY 1dekA 71 :NLNLTKLEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66858 # 1e58A.287.147 read from T0547.t04.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)N289 (1e58A)T150 because Y (epsilon') conformation "forbidden" or filtered. T0547 287 :SR 1e58A 148 :PL T0547 290 :YTLREY 1e58A 151 :ESLALT Number of specific fragments extracted= 2 number of extra gaps= 1 total=66860 # 1o6dA.287.122 read from T0547.t04.many.frag # found chain 1o6dA in training set T0547 287 :SRNYTLREY 1o6dA 121 :KMTFTHGMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=66861 1xg8A expands to /projects/compbio/data/pdb/1xg8.pdb.gz 1xg8A:# 1xg8A.287.22 read from T0547.t04.many.frag # adding 1xg8A to template set # found chain 1xg8A in template set T0547 287 :SRNYTLREY 1xg8A 14 :VNAPTSKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66862 # 1ynbA.287.33 read from T0547.t04.many.frag # found chain 1ynbA in training set Warning: unaligning (T0547)N289 (1ynbA)P36 because P (beta_P) conformation "forbidden" or filtered. T0547 287 :SR 1ynbA 34 :RL T0547 290 :YTLREY 1ynbA 37 :ESVAEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=66864 # 2amdA.287.53 read from T0547.t04.many.frag # found chain 2amdA in template set T0547 287 :SRNYTLREY 2amdA 49 :MLNPNYEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66865 # 1va6A.287.250 read from T0547.t04.many.frag # found chain 1va6A in template set T0547 287 :SRNYTLREY 1va6A 251 :ITFNDLYEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=66866 # 1ryp2.287.83 read from T0547.t04.many.frag # found chain 1ryp2 in template set T0547 287 :SRNYTLREY 1ryp2 76 :EEALEPSYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66867 # 2c5uA.287.187 read from T0547.t04.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)S287 (2c5uA)G187 because T (delta_L) conformation "forbidden" or filtered. T0547 288 :RNYTLREY 2c5uA 188 :EYISYDDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=66868 # 1v0wA.287.125 read from T0547.t04.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)S287 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v0wA)H129 Warning: unaligning (T0547)R288 (1v0wA)M130 because L (left) conformation "forbidden" or filtered. T0547 289 :NYTLREY 1v0wA 131 :NVIPSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=66869 # 2c0hA.288.193 read from T0547.t04.many.frag # found chain 2c0hA in training set T0547 288 :RNYTLREYA 2c0hA 208 :HLYSAQEIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=66870 # 1woqA.288.46 read from T0547.t04.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N289 (1woqA)P48 because C (cis) conformation "forbidden" or filtered. T0547 288 :R 1woqA 47 :Q T0547 290 :YTLREYA 1woqA 49 :ATPESVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=66872 # 1h6pA.288.167 read from T0547.t04.many.frag # found chain 1h6pA in template set T0547 288 :RNYTLREYA 1h6pA 210 :QNFSYETFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=66873 # 1bu6O.288.44 read from T0547.t04.many.frag # found chain 1bu6O in template set T0547 288 :RNYTLREYA 1bu6O 45 :VEHDPMEIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=66874 # 1vjvA.288.121 read from T0547.t04.many.frag # found chain 1vjvA in training set T0547 288 :RNYTLREYA 1vjvA 206 :KQQDAEELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=66875 # 2bghA.288.51 read from T0547.t04.many.frag # found chain 2bghA in template set T0547 288 :RNYTLREYA 2bghA 52 :SNLDPAQTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=66876 # 1pi1A.288.75 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 288 :RNYTLREYA 1pi1A 86 :IKCSAPKYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66877 # 1zaiA.288.240 read from T0547.t04.many.frag # found chain 1zaiA in training set T0547 288 :RNYTLREYA 1zaiA 241 :QKYSHEEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66878 # 1sw5B.288.77 read from T0547.t04.many.frag # found chain 1sw5B in template set T0547 288 :RNYTLREYA 1sw5B 78 :ELWDQQYIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=66879 # 1sz7A.288.75 read from T0547.t04.many.frag # found chain 1sz7A in training set Warning: unaligning (T0547)N289 (1sz7A)C68 because Y (epsilon') conformation "forbidden" or filtered. T0547 288 :R 1sz7A 67 :R T0547 290 :YTLREYA 1sz7A 69 :HDFRETA Number of specific fragments extracted= 2 number of extra gaps= 1 total=66881 # 1musA.288.66 read from T0547.t04.many.frag # found chain 1musA in template set T0547 288 :RNYTLREYA 1musA 67 :PNVSAEAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=66882 # 1q9jA.288.295 read from T0547.t04.many.frag # found chain 1q9jA in template set T0547 288 :RNYTLREYA 1q9jA 296 :PNTDIVDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66883 # 1q0rA.288.72 read from T0547.t04.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)N289 (1q0rA)P74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y290 (1q0rA)Y75 because Y (epsilon') conformation "forbidden" or filtered. T0547 288 :R 1q0rA 73 :H T0547 291 :TLREYA 1q0rA 76 :GFGELA Number of specific fragments extracted= 2 number of extra gaps= 1 total=66885 # 1ycdA.288.81 read from T0547.t04.many.frag # found chain 1ycdA in training set T0547 288 :RNYTLREYA 1ycdA 82 :HELDISEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66886 # 1gqiA.288.295 read from T0547.t04.many.frag # found chain 1gqiA in training set T0547 288 :RNYTLREYA 1gqiA 300 :YGRDHAEGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66887 # 1hziA.288.104 read from T0547.t04.many.frag # found chain 1hziA in template set T0547 288 :RNYTLREYA 1hziA 105 :NQSTLENFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66888 # 1iruK.288.72 read from T0547.t04.many.frag # found chain 1iruK in template set T0547 288 :RNYTLREYA 1iruK 73 :YELSPTAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66889 # 1nytA.288.254 read from T0547.t04.many.frag # found chain 1nytA in training set T0547 288 :RNYTLREYA 1nytA 255 :VLPDVEPVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66890 # 2d0oA.288.365 read from T0547.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0547)N289 (2d0oA)R367 because Y (epsilon') conformation "forbidden" or filtered. T0547 288 :R 2d0oA 366 :D T0547 290 :YTLREYA 2d0oA 368 :LQMAMIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=66892 # 1uh4A.288.437 read from T0547.t04.many.frag # found chain 1uh4A in template set T0547 288 :RNYTLREYA 1uh4A 438 :ASISTTQFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66893 # 1vqoB.288.117 read from T0547.t04.many.frag # found chain 1vqoB in template set T0547 288 :RNYTLREYA 1vqoB 117 :EDHDPDAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66894 # 1xcrA.288.9 read from T0547.t04.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE in next template residue (1xcrA)L13 Warning: unaligning (T0547)L292 because of BadResidue code BAD_PEPTIDE at template residue (1xcrA)L13 T0547 288 :RNY 1xcrA 9 :HVP T0547 293 :REYA 1xcrA 14 :EELA Number of specific fragments extracted= 2 number of extra gaps= 1 total=66896 # 1dekA.288.71 read from T0547.t04.many.frag # found chain 1dekA in template set T0547 288 :RNYTLREYA 1dekA 72 :LNLTKLEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66897 # 1qtwA.288.114 read from T0547.t04.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)R288 because of BadResidue code BAD_PEPTIDE at template residue (1qtwA)M115 T0547 289 :NYTLREYA 1qtwA 116 :QISEEDCL Number of specific fragments extracted= 1 number of extra gaps= 1 total=66898 # 7odcA.288.243 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 288 :RNYTLREYA 7odcA 244 :TKLKFEEIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=66899 # 1wer.288.123 read from T0547.t04.many.frag # found chain 1wer in training set Warning: unaligning (T0547)R288 because of BadResidue code BAD_PEPTIDE in next template residue (1wer)N838 Warning: unaligning (T0547)N289 because of BadResidue code BAD_PEPTIDE at template residue (1wer)N838 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE at template residue (1wer)E839 T0547 291 :TLREYA 1wer 840 :DVNTNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=66900 # 1knyA.288.4 read from T0547.t04.many.frag # found chain 1knyA in template set Warning: unaligning (T0547)N289 (1knyA)I6 because P (beta_P) conformation "forbidden" or filtered. T0547 288 :R 1knyA 5 :I T0547 290 :YTLREYA 1knyA 7 :MTREERM Number of specific fragments extracted= 2 number of extra gaps= 1 total=66902 # 2amdA.288.54 read from T0547.t04.many.frag # found chain 2amdA in template set T0547 288 :RNYTLREYA 2amdA 50 :LNPNYEDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66903 # 1o6dA.288.123 read from T0547.t04.many.frag # found chain 1o6dA in training set T0547 288 :RNYTLREYA 1o6dA 122 :MTFTHGMTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66904 # 1ty9A.288.32 read from T0547.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0547)R288 (1ty9A)L33 because L (left) conformation "forbidden" or filtered. T0547 289 :NYTLREYA 1ty9A 34 :PADPMSVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=66905 # 2c0hA.289.194 read from T0547.t04.many.frag # found chain 2c0hA in training set T0547 289 :NYTLREYAN 2c0hA 209 :LYSAQEIGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=66906 # 1woqA.289.47 read from T0547.t04.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N289 (1woqA)P48 because C (cis) conformation "forbidden" or filtered. T0547 290 :YTLREYAN 1woqA 49 :ATPESVAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=66907 # 1bu6O.289.45 read from T0547.t04.many.frag # found chain 1bu6O in template set T0547 289 :NYTLREYAN 1bu6O 46 :EHDPMEIWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66908 # 2bghA.289.52 read from T0547.t04.many.frag # found chain 2bghA in template set Warning: unaligning (T0547)N289 (2bghA)N53 because D (zeta) conformation "forbidden" or filtered. T0547 290 :YTLREYAN 2bghA 54 :LDPAQTSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=66909 # 1pi1A.289.76 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 289 :NYTLREYAN 1pi1A 87 :KCSAPKYID Number of specific fragments extracted= 1 number of extra gaps= 0 total=66910 # 1q9jA.289.296 read from T0547.t04.many.frag # found chain 1q9jA in template set T0547 289 :NYTLREYAN 1q9jA 297 :NTDIVDLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=66911 # 1hziA.289.105 read from T0547.t04.many.frag # found chain 1hziA in template set T0547 289 :NYTLREYAN 1hziA 106 :QSTLENFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66912 # 1h6pA.289.168 read from T0547.t04.many.frag # found chain 1h6pA in template set T0547 289 :NYTLREYAN 1h6pA 211 :NFSYETFQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=66913 # 1vjvA.289.122 read from T0547.t04.many.frag # found chain 1vjvA in training set T0547 289 :NYTLREYAN 1vjvA 207 :QQDAEELFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=66914 # 1iruK.289.73 read from T0547.t04.many.frag # found chain 1iruK in template set T0547 289 :NYTLREYAN 1iruK 74 :ELSPTAAAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=66915 # 1sw5B.289.78 read from T0547.t04.many.frag # found chain 1sw5B in template set T0547 289 :NYTLREYAN 1sw5B 79 :LWDQQYIFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66916 # 7odcA.289.244 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 289 :NYTLREYAN 7odcA 245 :KLKFEEITS Number of specific fragments extracted= 1 number of extra gaps= 0 total=66917 # 1xcrA.289.10 read from T0547.t04.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE in next template residue (1xcrA)L13 Warning: unaligning (T0547)L292 because of BadResidue code BAD_PEPTIDE at template residue (1xcrA)L13 Warning: unaligning (T0547)N297 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xcrA)V19 T0547 289 :NY 1xcrA 10 :VP T0547 293 :REYA 1xcrA 14 :EELA Number of specific fragments extracted= 2 number of extra gaps= 2 total=66919 # 1sz7A.289.76 read from T0547.t04.many.frag # found chain 1sz7A in training set Warning: unaligning (T0547)N289 (1sz7A)C68 because Y (epsilon') conformation "forbidden" or filtered. T0547 290 :YTLREYAN 1sz7A 69 :HDFRETAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=66920 # 1zaiA.289.241 read from T0547.t04.many.frag # found chain 1zaiA in training set T0547 289 :NYTLREYAN 1zaiA 242 :KYSHEEIAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=66921 # 1ycdA.289.82 read from T0547.t04.many.frag # found chain 1ycdA in training set T0547 289 :NYTLREYAN 1ycdA 83 :ELDISEGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=66922 # 1knwA.289.237 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 289 :NYTLREYAN 1knwA 238 :AVDTEHYYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=66923 # 1ryp2.289.85 read from T0547.t04.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0547)N289 (1ryp2)A78 because P (beta_P) conformation "forbidden" or filtered. T0547 290 :YTLREYAN 1ryp2 79 :LEPSYIFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=66924 1yarA expands to /projects/compbio/data/pdb/1yar.pdb.gz 1yarA:Skipped atom 82, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 84, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 86, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 90, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 92, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 94, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 98, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 133, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 135, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 137, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 139, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 141, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 143, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 145, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 147, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 149, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 151, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 153, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 453, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 455, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 457, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 459, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 461, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 463, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 465, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 467, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 469, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 532, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 534, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 536, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 538, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 540, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 542, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 544, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 577, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 581, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 996, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 998, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1000, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1002, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1004, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1006, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1163, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1165, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1167, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1169, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1171, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1173, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1175, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1177, because occupancy 0.500 <= existing 0.500 in 1yarA # 1yarA.289.105 read from T0547.t04.many.frag # adding 1yarA to template set # found chain 1yarA in template set T0547 289 :NYTLREYAN 1yarA 106 :LVNIENLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=66925 # 1qtwA.289.115 read from T0547.t04.many.frag # found chain 1qtwA in training set T0547 289 :NYTLREYAN 1qtwA 116 :QISEEDCLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66926 # 1va6A.289.252 read from T0547.t04.many.frag # found chain 1va6A in template set T0547 289 :NYTLREYAN 1va6A 253 :FNDLYEYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66927 # 1h54A.289.286 read from T0547.t04.many.frag # found chain 1h54A in template set T0547 289 :NYTLREYAN 1h54A 287 :QSSYEDLLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=66928 # 1q0rA.289.73 read from T0547.t04.many.frag # found chain 1q0rA in training set T0547 289 :NYTLREYAN 1q0rA 74 :PYGFGELAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66929 # 1musA.289.67 read from T0547.t04.many.frag # found chain 1musA in template set T0547 289 :NYTLREYAN 1musA 68 :NVSAEAIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=66930 # 1knyA.289.5 read from T0547.t04.many.frag # found chain 1knyA in template set Warning: unaligning (T0547)Y290 (1knyA)M7 because Y (epsilon') conformation "forbidden" or filtered. T0547 289 :N 1knyA 6 :I T0547 291 :TLREYAN 1knyA 8 :TREERMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=66932 1el6A expands to /projects/compbio/data/pdb/1el6.pdb.gz 1el6A:# 1el6A.289.118 read from T0547.t04.many.frag # adding 1el6A to template set # found chain 1el6A in template set T0547 289 :NYTLREYAN 1el6A 119 :GMTAIEFVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66933 # 1j7xA.289.39 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 289 :NYTLREYAN 1j7xA 41 :VISEEDIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66934 # 1ynbA.289.35 read from T0547.t04.many.frag # found chain 1ynbA in training set T0547 289 :NYTLREYAN 1ynbA 36 :PESVAEHNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=66935 # 1tz9A.289.304 read from T0547.t04.many.frag # found chain 1tz9A in template set T0547 289 :NYTLREYAN 1tz9A 295 :SLDMAELMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=66936 # 1uh4A.289.438 read from T0547.t04.many.frag # found chain 1uh4A in template set T0547 289 :NYTLREYAN 1uh4A 439 :SISTTQFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=66937 # 1woqA.290.48 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 290 :YTLREYAND 1woqA 49 :ATPESVAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66938 # 7odcA.290.245 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 290 :YTLREYAND 7odcA 246 :LKFEEITSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66939 # 1knwA.290.238 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 290 :YTLREYAND 1knwA 239 :VDTEHYYGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66940 # 1q9jA.290.297 read from T0547.t04.many.frag # found chain 1q9jA in template set T0547 290 :YTLREYAND 1q9jA 298 :TDIVDLASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=66941 # 1iruK.290.74 read from T0547.t04.many.frag # found chain 1iruK in template set T0547 290 :YTLREYAND 1iruK 75 :LSPTAAANF Number of specific fragments extracted= 1 number of extra gaps= 0 total=66942 # 1pi1A.290.77 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 290 :YTLREYAND 1pi1A 88 :CSAPKYIDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=66943 # 2c0hA.290.195 read from T0547.t04.many.frag # found chain 2c0hA in training set T0547 290 :YTLREYAND 2c0hA 210 :YSAQEIGRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=66944 # 1bu6O.290.46 read from T0547.t04.many.frag # found chain 1bu6O in template set T0547 290 :YTLREYAND 1bu6O 47 :HDPMEIWAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=66945 # 1yarA.290.106 read from T0547.t04.many.frag # found chain 1yarA in template set T0547 290 :YTLREYAND 1yarA 107 :VNIENLVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=66946 # 2bghA.290.53 read from T0547.t04.many.frag # found chain 2bghA in template set T0547 290 :YTLREYAND 2bghA 54 :LDPAQTSQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=66947 # 1qtwA.290.116 read from T0547.t04.many.frag # found chain 1qtwA in training set T0547 290 :YTLREYAND 1qtwA 117 :ISEEDCLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=66948 # 1ryp2.290.86 read from T0547.t04.many.frag # found chain 1ryp2 in template set T0547 290 :YTLREYAND 1ryp2 79 :LEPSYIFEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=66949 # 1j7xA.290.40 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 290 :YTLREYAND 1j7xA 42 :ISEEDIAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=66950 # 1hziA.290.106 read from T0547.t04.many.frag # found chain 1hziA in template set T0547 290 :YTLREYAND 1hziA 107 :STLENFLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=66951 # 1xcrA.290.11 read from T0547.t04.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE in next template residue (1xcrA)L13 Warning: unaligning (T0547)L292 because of BadResidue code BAD_PEPTIDE at template residue (1xcrA)L13 Warning: unaligning (T0547)N297 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xcrA)V19 Warning: unaligning (T0547)D298 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xcrA)V19 T0547 290 :Y 1xcrA 11 :P T0547 293 :REYA 1xcrA 14 :EELA Number of specific fragments extracted= 2 number of extra gaps= 2 total=66953 # 1sw5B.290.79 read from T0547.t04.many.frag # found chain 1sw5B in template set T0547 290 :YTLREYAND 1sw5B 80 :WDQQYIFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66954 # 1h54A.290.287 read from T0547.t04.many.frag # found chain 1h54A in template set T0547 290 :YTLREYAND 1h54A 288 :SSYEDLLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66955 # 1h6pA.290.169 read from T0547.t04.many.frag # found chain 1h6pA in template set T0547 290 :YTLREYAND 1h6pA 212 :FSYETFQQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=66956 # 1vrmA.290.38 read from T0547.t04.many.frag # found chain 1vrmA in training set T0547 290 :YTLREYAND 1vrmA 66 :INPRTIAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66957 # 1el6A.290.119 read from T0547.t04.many.frag # found chain 1el6A in template set T0547 290 :YTLREYAND 1el6A 120 :MTAIEFVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=66958 # 1pp0A.290.93 read from T0547.t04.many.frag # found chain 1pp0A in training set T0547 290 :YTLREYAND 1pp0A 94 :VDLSKLAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66959 # 1s7zA.290.5 read from T0547.t04.many.frag # found chain 1s7zA in template set Warning: unaligning (T0547)Y290 because first residue in template chain is (1s7zA)M5 T0547 291 :TLREYAND 1s7zA 6 :TYNNVFDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=66960 # 1dqaA.290.301 read from T0547.t04.many.frag # found chain 1dqaA in template set T0547 290 :YTLREYAND 1dqaA 723 :TTTEAMIEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66961 # 1vjvA.290.123 read from T0547.t04.many.frag # found chain 1vjvA in training set T0547 290 :YTLREYAND 1vjvA 208 :QDAEELFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=66962 # 1d0cA.290.165 read from T0547.t04.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)T291 (1d0cA)S205 because Y (epsilon') conformation "forbidden" or filtered. T0547 290 :Y 1d0cA 204 :S T0547 292 :LREYAND 1d0cA 206 :AQEMFTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=66964 # 1qreA.290.226 read from T0547.t04.many.frag # found chain 1qreA in training set T0547 290 :YTLREYAND 1qreA 193 :HTNEAVVYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66965 # 1u14A.290.46 read from T0547.t04.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)T291 (1u14A)G47 because S (epsilon) conformation "forbidden" or filtered. T0547 290 :Y 1u14A 46 :F T0547 292 :LREYAND 1u14A 48 :SEETRAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=66967 # 2audA.290.219 read from T0547.t04.many.frag # found chain 2audA in template set T0547 290 :YTLREYAND 2audA 221 :GTREEWAKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=66968 # 1sz7A.290.77 read from T0547.t04.many.frag # found chain 1sz7A in training set T0547 290 :YTLREYAND 1sz7A 69 :HDFRETADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66969 # 1r5lA.290.233 read from T0547.t04.many.frag # found chain 1r5lA in training set T0547 290 :YTLREYAND 1r5lA 250 :FSMEDICQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=66970 # 1pi1A.291.78 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 291 :TLREYANDV 1pi1A 89 :SAPKYIDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66971 # 1iruK.291.75 read from T0547.t04.many.frag # found chain 1iruK in template set T0547 291 :TLREYANDV 1iruK 76 :SPTAAANFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=66972 # 7odcA.291.246 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 291 :TLREYANDV 7odcA 247 :KFEEITSVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66973 # 1yarA.291.107 read from T0547.t04.many.frag # found chain 1yarA in template set T0547 291 :TLREYANDV 1yarA 108 :NIENLVKRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66974 # 1knwA.291.239 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 291 :TLREYANDV 1knwA 240 :DTEHYYGLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=66975 # 1q9jA.291.298 read from T0547.t04.many.frag # found chain 1q9jA in template set T0547 291 :TLREYANDV 1q9jA 299 :DIVDLASDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66976 # 1woqA.291.49 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 291 :TLREYANDV 1woqA 50 :TPESVAEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66977 # 1ryp2.291.87 read from T0547.t04.many.frag # found chain 1ryp2 in template set T0547 291 :TLREYANDV 1ryp2 80 :EPSYIFEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66978 # 1bu6O.291.47 read from T0547.t04.many.frag # found chain 1bu6O in template set T0547 291 :TLREYANDV 1bu6O 48 :DPMEIWATQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=66979 # 1d0cA.291.166 read from T0547.t04.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)T291 (1d0cA)S205 because Y (epsilon') conformation "forbidden" or filtered. T0547 292 :LREYANDV 1d0cA 206 :AQEMFTYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=66980 # 1j7xA.291.41 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 291 :TLREYANDV 1j7xA 43 :SEEDIAAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66981 # 2c8mA.291.97 read from T0547.t04.many.frag # found chain 2c8mA in template set T0547 291 :TLREYANDV 2c8mA 98 :DITSMFRTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=66982 # 1hziA.291.107 read from T0547.t04.many.frag # found chain 1hziA in template set T0547 291 :TLREYANDV 1hziA 108 :TLENFLERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66983 # 2c0hA.291.196 read from T0547.t04.many.frag # found chain 2c0hA in training set T0547 291 :TLREYANDV 2c0hA 211 :SAQEIGRFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66984 # 1qtwA.291.117 read from T0547.t04.many.frag # found chain 1qtwA in training set T0547 291 :TLREYANDV 1qtwA 118 :SEEDCLARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66985 # 1el6A.291.120 read from T0547.t04.many.frag # found chain 1el6A in template set T0547 291 :TLREYANDV 1el6A 121 :TAIEFVAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66986 # 1pp0A.291.94 read from T0547.t04.many.frag # found chain 1pp0A in training set T0547 291 :TLREYANDV 1pp0A 95 :DLSKLAAII Number of specific fragments extracted= 1 number of extra gaps= 0 total=66987 # 2audA.291.220 read from T0547.t04.many.frag # found chain 2audA in template set T0547 291 :TLREYANDV 2audA 222 :TREEWAKSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=66988 # 1s7zA.291.6 read from T0547.t04.many.frag # found chain 1s7zA in template set T0547 291 :TLREYANDV 1s7zA 6 :TYNNVFDHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=66989 # 1j24A.291.116 read from T0547.t04.many.frag # found chain 1j24A in training set T0547 291 :TLREYANDV 1j24A 117 :TPEETAQYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66990 # 1h54A.291.288 read from T0547.t04.many.frag # found chain 1h54A in template set T0547 291 :TLREYANDV 1h54A 289 :SYEDLLNAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=66991 # 2bghA.291.54 read from T0547.t04.many.frag # found chain 2bghA in template set T0547 291 :TLREYANDV 2bghA 55 :DPAQTSQHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=66992 # 1xcrA.291.12 read from T0547.t04.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE in next template residue (1xcrA)L13 Warning: unaligning (T0547)L292 because of BadResidue code BAD_PEPTIDE at template residue (1xcrA)L13 Warning: unaligning (T0547)N297 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xcrA)V19 Warning: unaligning (T0547)D298 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xcrA)V19 T0547 293 :REYA 1xcrA 14 :EELA T0547 299 :V 1xcrA 20 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=66994 # 2tpsA.291.207 read from T0547.t04.many.frag # found chain 2tpsA in training set T0547 291 :TLREYANDV 2tpsA 216 :DPESAARKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=66995 # 1tqhA.291.122 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 291 :TLREYANDV 1tqhA 123 :SEETMYEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=66996 # 1qu9A.291.44 read from T0547.t04.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE at template residue (1qu9A)D45 T0547 292 :LREYANDV 1qu9A 46 :VAAQARQS Number of specific fragments extracted= 1 number of extra gaps= 1 total=66997 1ejbA expands to /projects/compbio/data/pdb/1ejb.pdb.gz 1ejbA:# 1ejbA.291.96 read from T0547.t04.many.frag # adding 1ejbA to template set # found chain 1ejbA in template set T0547 291 :TLREYANDV 1ejbA 97 :HFEYISDST Number of specific fragments extracted= 1 number of extra gaps= 0 total=66998 # 1vrmA.291.39 read from T0547.t04.many.frag # found chain 1vrmA in training set T0547 291 :TLREYANDV 1vrmA 67 :NPRTIAEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=66999 # 1w66A.291.102 read from T0547.t04.many.frag # found chain 1w66A in training set T0547 291 :TLREYANDV 1w66A 101 :DVVNYVRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67000 # 1lw7A.291.221 read from T0547.t04.many.frag # found chain 1lw7A in template set T0547 291 :TLREYANDV 1lw7A 278 :DYPQMALGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=67001 # 1iruK.292.76 read from T0547.t04.many.frag # found chain 1iruK in template set T0547 292 :LREYANDVV 1iruK 77 :PTAAANFTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67002 # 1pi1A.292.79 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 292 :LREYANDVV 1pi1A 90 :APKYIDYLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=67003 # 7odcA.292.247 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 292 :LREYANDVV 7odcA 248 :FEEITSVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67004 # 1knwA.292.240 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 292 :LREYANDVV 1knwA 241 :TEHYYGLWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67005 # 1ryp2.292.88 read from T0547.t04.many.frag # found chain 1ryp2 in template set T0547 292 :LREYANDVV 1ryp2 81 :PSYIFEYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67006 # 1yarA.292.108 read from T0547.t04.many.frag # found chain 1yarA in template set T0547 292 :LREYANDVV 1yarA 109 :IENLVKRVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67007 # 1q9jA.292.299 read from T0547.t04.many.frag # found chain 1q9jA in template set T0547 292 :LREYANDVV 1q9jA 300 :IVDLASDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67008 # 1woqA.292.50 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 292 :LREYANDVV 1woqA 51 :PESVAEAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67009 # 1d0cA.292.167 read from T0547.t04.many.frag # found chain 1d0cA in training set T0547 292 :LREYANDVV 1d0cA 206 :AQEMFTYIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=67010 # 2c8mA.292.98 read from T0547.t04.many.frag # found chain 2c8mA in template set T0547 292 :LREYANDVV 2c8mA 99 :ITSMFRTMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67011 # 1tqhA.292.123 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 292 :LREYANDVV 1tqhA 124 :EETMYEGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67012 # 1ejbA.292.97 read from T0547.t04.many.frag # found chain 1ejbA in template set T0547 292 :LREYANDVV 1ejbA 98 :FEYISDSTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67013 # 1bu6O.292.48 read from T0547.t04.many.frag # found chain 1bu6O in template set T0547 292 :LREYANDVV 1bu6O 49 :PMEIWATQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=67014 # 1el6A.292.121 read from T0547.t04.many.frag # found chain 1el6A in template set T0547 292 :LREYANDVV 1el6A 122 :AIEFVAKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67015 # 1j24A.292.117 read from T0547.t04.many.frag # found chain 1j24A in training set T0547 292 :LREYANDVV 1j24A 118 :PEETAQYIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=67016 # 1j7xA.292.42 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 292 :LREYANDVV 1j7xA 44 :EEDIAAKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67017 # 1cg5B.292.55 read from T0547.t04.many.frag # found chain 1cg5B in training set T0547 292 :LREYANDVV 1cg5B 56 :VQQHADKVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67018 # 1s7zA.292.7 read from T0547.t04.many.frag # found chain 1s7zA in template set T0547 292 :LREYANDVV 1s7zA 7 :YNNVFDHAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67019 # 1msk.292.76 read from T0547.t04.many.frag # found chain 1msk in template set T0547 292 :LREYANDVV 1msk 973 :AQRLFKDAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67020 # 1t0hB.292.190 read from T0547.t04.many.frag # found chain 1t0hB in template set T0547 292 :LREYANDVV 1t0hB 392 :LEDACEHLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67021 # 1qtwA.292.118 read from T0547.t04.many.frag # found chain 1qtwA in training set T0547 292 :LREYANDVV 1qtwA 119 :EEDCLARIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67022 # 1pp0A.292.95 read from T0547.t04.many.frag # found chain 1pp0A in training set T0547 292 :LREYANDVV 1pp0A 96 :LSKLAAIIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67023 # 1qw9A.292.263 read from T0547.t04.many.frag # found chain 1qw9A in training set T0547 292 :LREYANDVV 1qw9A 264 :MDDFIRSVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67024 # 1vj7A.292.213 read from T0547.t04.many.frag # found chain 1vj7A in template set T0547 292 :LREYANDVV 1vj7A 214 :REALVDDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67025 # 1hziA.292.108 read from T0547.t04.many.frag # found chain 1hziA in template set T0547 292 :LREYANDVV 1hziA 109 :LENFLERLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67026 # 2anuA.292.81 read from T0547.t04.many.frag # found chain 2anuA in template set T0547 292 :LREYANDVV 2anuA 70 :FQDYLKRLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=67027 # 2c0hA.292.197 read from T0547.t04.many.frag # found chain 2c0hA in training set T0547 292 :LREYANDVV 2c0hA 212 :AQEIGRFVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67028 # 1u14A.292.48 read from T0547.t04.many.frag # found chain 1u14A in training set T0547 292 :LREYANDVV 1u14A 48 :SEETRAGAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67029 # 2tpsA.292.208 read from T0547.t04.many.frag # found chain 2tpsA in training set T0547 292 :LREYANDVV 2tpsA 217 :PESAARKFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67030 # 1qu9A.292.45 read from T0547.t04.many.frag # found chain 1qu9A in training set T0547 292 :LREYANDVV 1qu9A 46 :VAAQARQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67031 # 1iruK.293.77 read from T0547.t04.many.frag # found chain 1iruK in template set T0547 293 :REYANDVVF 1iruK 78 :TAAANFTRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67032 # 1pi1A.293.80 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 293 :REYANDVVF 1pi1A 91 :PKYIDYLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67033 # 7odcA.293.248 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 293 :REYANDVVF 7odcA 249 :EEITSVINP Number of specific fragments extracted= 1 number of extra gaps= 0 total=67034 # 1ryp2.293.89 read from T0547.t04.many.frag # found chain 1ryp2 in template set T0547 293 :REYANDVVF 1ryp2 82 :SYIFEYLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67035 # 1q9jA.293.300 read from T0547.t04.many.frag # found chain 1q9jA in template set T0547 293 :REYANDVVF 1q9jA 301 :VDLASDIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67036 # 1cg5B.293.56 read from T0547.t04.many.frag # found chain 1cg5B in training set T0547 293 :REYANDVVF 1cg5B 57 :QQHADKVQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67037 # 1yarA.293.109 read from T0547.t04.many.frag # found chain 1yarA in template set T0547 293 :REYANDVVF 1yarA 110 :ENLVKRVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67038 # 2c8mA.293.99 read from T0547.t04.many.frag # found chain 2c8mA in template set T0547 293 :REYANDVVF 2c8mA 100 :TSMFRTMNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67039 # 1ejbA.293.98 read from T0547.t04.many.frag # found chain 1ejbA in template set T0547 293 :REYANDVVF 1ejbA 99 :EYISDSTTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=67040 # 1qw9A.293.264 read from T0547.t04.many.frag # found chain 1qw9A in training set T0547 293 :REYANDVVF 1qw9A 265 :DDFIRSVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67041 # 1bu6O.293.49 read from T0547.t04.many.frag # found chain 1bu6O in template set T0547 293 :REYANDVVF 1bu6O 50 :MEIWATQSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=67042 # 1knwA.293.241 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 293 :REYANDVVF 1knwA 242 :EHYYGLWNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67043 # 1t0hB.293.191 read from T0547.t04.many.frag # found chain 1t0hB in template set T0547 293 :REYANDVVF 1t0hB 393 :EDACEHLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67044 # 1woqA.293.51 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 293 :REYANDVVF 1woqA 52 :ESVAEAVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67045 # 1j24A.293.118 read from T0547.t04.many.frag # found chain 1j24A in training set T0547 293 :REYANDVVF 1j24A 119 :EETAQYIFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67046 # 1j7xA.293.43 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 293 :REYANDVVF 1j7xA 45 :EDIAAKLNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67047 # 1msk.293.77 read from T0547.t04.many.frag # found chain 1msk in template set T0547 293 :REYANDVVF 1msk 974 :QRLFKDAND Number of specific fragments extracted= 1 number of extra gaps= 0 total=67048 # 2tpsA.293.209 read from T0547.t04.many.frag # found chain 2tpsA in training set T0547 293 :REYANDVVF 2tpsA 218 :ESAARKFRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67049 # 1s7zA.293.8 read from T0547.t04.many.frag # found chain 1s7zA in template set T0547 293 :REYANDVVF 1s7zA 8 :NNVFDHAYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67050 # 1d0cA.293.168 read from T0547.t04.many.frag # found chain 1d0cA in training set T0547 293 :REYANDVVF 1d0cA 207 :QEMFTYICN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67051 # 1qu9A.293.46 read from T0547.t04.many.frag # found chain 1qu9A in training set T0547 293 :REYANDVVF 1qu9A 47 :AAQARQSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67052 # 1vj7A.293.214 read from T0547.t04.many.frag # found chain 1vj7A in template set T0547 293 :REYANDVVF 1vj7A 215 :EALVDDIVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67053 # 1el6A.293.122 read from T0547.t04.many.frag # found chain 1el6A in template set T0547 293 :REYANDVVF 1el6A 123 :IEFVAKVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67054 # 1tqhA.293.124 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 293 :REYANDVVF 1tqhA 125 :ETMYEGVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67055 # 1ygtA.293.37 read from T0547.t04.many.frag # found chain 1ygtA in training set T0547 293 :REYANDVVF 1ygtA 38 :NNWTGQVVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67056 # 1pp0A.293.96 read from T0547.t04.many.frag # found chain 1pp0A in training set T0547 293 :REYANDVVF 1pp0A 97 :SKLAAIILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67057 # 2anuA.293.82 read from T0547.t04.many.frag # found chain 2anuA in template set T0547 293 :REYANDVVF 2anuA 71 :QDYLKRLWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67058 # 1lw7A.293.223 read from T0547.t04.many.frag # found chain 1lw7A in template set T0547 293 :REYANDVVF 1lw7A 280 :PQMALGHQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67059 # 1h54A.293.290 read from T0547.t04.many.frag # found chain 1h54A in template set T0547 293 :REYANDVVF 1h54A 291 :EDLLNAHTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67060 # 1hziA.293.109 read from T0547.t04.many.frag # found chain 1hziA in template set T0547 293 :REYANDVVF 1hziA 110 :ENFLERLKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67061 # 1iruK.294.78 read from T0547.t04.many.frag # found chain 1iruK in template set T0547 294 :EYANDVVFI 1iruK 79 :AAANFTRRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67062 # 1ryp2.294.90 read from T0547.t04.many.frag # found chain 1ryp2 in template set T0547 294 :EYANDVVFI 1ryp2 83 :YIFEYLATV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67063 # 7odcA.294.249 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 294 :EYANDVVFI 7odcA 250 :EITSVINPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67064 # 1pi1A.294.81 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 294 :EYANDVVFI 1pi1A 92 :KYIDYLMTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=67065 # 1cg5B.294.57 read from T0547.t04.many.frag # found chain 1cg5B in training set T0547 294 :EYANDVVFI 1cg5B 58 :QHADKVQRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67066 # 1yarA.294.110 read from T0547.t04.many.frag # found chain 1yarA in template set T0547 294 :EYANDVVFI 1yarA 111 :NLVKRVADQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67067 # 1knwA.294.242 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 294 :EYANDVVFI 1knwA 243 :HYYGLWNAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67068 # 1ejbA.294.99 read from T0547.t04.many.frag # found chain 1ejbA in template set T0547 294 :EYANDVVFI 1ejbA 100 :YISDSTTHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67069 # 1q9jA.294.301 read from T0547.t04.many.frag # found chain 1q9jA in template set T0547 294 :EYANDVVFI 1q9jA 302 :DLASDIVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67070 # 1el6A.294.123 read from T0547.t04.many.frag # found chain 1el6A in template set T0547 294 :EYANDVVFI 1el6A 124 :EFVAKVRVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67071 # 1d0cA.294.169 read from T0547.t04.many.frag # found chain 1d0cA in training set T0547 294 :EYANDVVFI 1d0cA 208 :EMFTYICNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=67072 # 1woqA.294.52 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 294 :EYANDVVFI 1woqA 53 :SVAEAVALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67073 # 1msk.294.78 read from T0547.t04.many.frag # found chain 1msk in template set T0547 294 :EYANDVVFI 1msk 975 :RLFKDANDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=67074 # 1tqhA.294.125 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 294 :EYANDVVFI 1tqhA 126 :TMYEGVLEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67075 # 2c8mA.294.100 read from T0547.t04.many.frag # found chain 2c8mA in template set T0547 294 :EYANDVVFI 2c8mA 101 :SMFRTMNEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67076 # 1qu9A.294.47 read from T0547.t04.many.frag # found chain 1qu9A in training set T0547 294 :EYANDVVFI 1qu9A 48 :AQARQSLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67077 # 1ygtA.294.38 read from T0547.t04.many.frag # found chain 1ygtA in training set T0547 294 :EYANDVVFI 1ygtA 39 :NWTGQVVEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67078 # 1vj7A.294.215 read from T0547.t04.many.frag # found chain 1vj7A in template set T0547 294 :EYANDVVFI 1vj7A 216 :ALVDDIVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67079 # 1bu6O.294.50 read from T0547.t04.many.frag # found chain 1bu6O in template set T0547 294 :EYANDVVFI 1bu6O 51 :EIWATQSST Number of specific fragments extracted= 1 number of extra gaps= 0 total=67080 # 1qw9A.294.265 read from T0547.t04.many.frag # found chain 1qw9A in training set T0547 294 :EYANDVVFI 1qw9A 266 :DFIRSVVAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67081 # 1j24A.294.119 read from T0547.t04.many.frag # found chain 1j24A in training set T0547 294 :EYANDVVFI 1j24A 120 :ETAQYIFLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67082 # 1s7zA.294.9 read from T0547.t04.many.frag # found chain 1s7zA in template set T0547 294 :EYANDVVFI 1s7zA 9 :NVFDHAYEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=67083 # 1t0hB.294.192 read from T0547.t04.many.frag # found chain 1t0hB in template set T0547 294 :EYANDVVFI 1t0hB 394 :DACEHLADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67084 # 1j7xA.294.44 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 294 :EYANDVVFI 1j7xA 46 :DIAAKLNYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67085 # 1u14A.294.50 read from T0547.t04.many.frag # found chain 1u14A in training set T0547 294 :EYANDVVFI 1u14A 50 :ETRAGARNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67086 1yw4A expands to /projects/compbio/data/pdb/1yw4.pdb.gz 1yw4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1yw4A.294.122 read from T0547.t04.many.frag # adding 1yw4A to template set # found chain 1yw4A in template set T0547 294 :EYANDVVFI 1yw4A 123 :VRAAELETL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67087 # 2anuA.294.83 read from T0547.t04.many.frag # found chain 2anuA in template set T0547 294 :EYANDVVFI 2anuA 72 :DYLKRLWRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67088 # 1pp0A.294.97 read from T0547.t04.many.frag # found chain 1pp0A in training set T0547 294 :EYANDVVFI 1pp0A 98 :KLAAIILNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67089 # 2tpsA.294.210 read from T0547.t04.many.frag # found chain 2tpsA in training set T0547 294 :EYANDVVFI 2tpsA 219 :SAARKFREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67090 # 1nnhA.294.15 read from T0547.t04.many.frag # found chain 1nnhA in training set T0547 294 :EYANDVVFI 1nnhA 16 :DIQTKILEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67091 # 7odcA.295.250 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 295 :YANDVVFIL 7odcA 251 :ITSVINPAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67092 # 1ryp2.295.91 read from T0547.t04.many.frag # found chain 1ryp2 in template set T0547 295 :YANDVVFIL 1ryp2 84 :IFEYLATVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=67093 # 1q9jA.295.302 read from T0547.t04.many.frag # found chain 1q9jA in template set T0547 295 :YANDVVFIL 1q9jA 303 :LASDIVATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67094 # 1d0cA.295.170 read from T0547.t04.many.frag # found chain 1d0cA in training set T0547 295 :YANDVVFIL 1d0cA 209 :MFTYICNHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67095 # 1iruK.295.79 read from T0547.t04.many.frag # found chain 1iruK in template set T0547 295 :YANDVVFIL 1iruK 80 :AANFTRRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67096 # 1yarA.295.111 read from T0547.t04.many.frag # found chain 1yarA in template set T0547 295 :YANDVVFIL 1yarA 112 :LVKRVADQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=67097 # 1vj7A.295.216 read from T0547.t04.many.frag # found chain 1vj7A in template set T0547 295 :YANDVVFIL 1vj7A 217 :LVDDIVTKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67098 # 1ygtA.295.39 read from T0547.t04.many.frag # found chain 1ygtA in training set T0547 295 :YANDVVFIL 1ygtA 40 :WTGQVVENC Number of specific fragments extracted= 1 number of extra gaps= 0 total=67099 # 1cg5B.295.58 read from T0547.t04.many.frag # found chain 1cg5B in training set T0547 295 :YANDVVFIL 1cg5B 59 :HADKVQRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67100 # 1pi1A.295.82 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 295 :YANDVVFIL 1pi1A 93 :YIDYLMTWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67101 # 1el6A.295.124 read from T0547.t04.many.frag # found chain 1el6A in template set T0547 295 :YANDVVFIL 1el6A 125 :FVAKVRVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67102 # 1tqhA.295.126 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 295 :YANDVVFIL 1tqhA 127 :MYEGVLEYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67103 # 1j24A.295.120 read from T0547.t04.many.frag # found chain 1j24A in training set T0547 295 :YANDVVFIL 1j24A 121 :TAQYIFLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67104 # 1woqA.295.53 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 295 :YANDVVFIL 1woqA 54 :VAEAVALVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67105 # 1knwA.295.243 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 295 :YANDVVFIL 1knwA 244 :YYGLWNAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67106 # 2c8mA.295.101 read from T0547.t04.many.frag # found chain 2c8mA in template set T0547 295 :YANDVVFIL 2c8mA 102 :MFRTMNEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67107 # 1ejbA.295.100 read from T0547.t04.many.frag # found chain 1ejbA in template set T0547 295 :YANDVVFIL 1ejbA 101 :ISDSTTHAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67108 # 1qw9A.295.266 read from T0547.t04.many.frag # found chain 1qw9A in training set T0547 295 :YANDVVFIL 1qw9A 267 :FIRSVVAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67109 # 1t0hB.295.193 read from T0547.t04.many.frag # found chain 1t0hB in template set T0547 295 :YANDVVFIL 1t0hB 395 :ACEHLADYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67110 # 1yw4A.295.123 read from T0547.t04.many.frag # found chain 1yw4A in template set T0547 295 :YANDVVFIL 1yw4A 124 :RAAELETLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67111 # 1msk.295.79 read from T0547.t04.many.frag # found chain 1msk in template set T0547 295 :YANDVVFIL 1msk 976 :LFKDANDML Number of specific fragments extracted= 1 number of extra gaps= 0 total=67112 # 1qu9A.295.48 read from T0547.t04.many.frag # found chain 1qu9A in training set T0547 295 :YANDVVFIL 1qu9A 49 :QARQSLDNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67113 # 1vrmA.295.43 read from T0547.t04.many.frag # found chain 1vrmA in training set T0547 295 :YANDVVFIL 1vrmA 71 :IAEAILEDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=67114 # 1j7xA.295.45 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 295 :YANDVVFIL 1j7xA 47 :IAAKLNYEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67115 # 1v2zA.295.90 read from T0547.t04.many.frag # found chain 1v2zA in training set T0547 295 :YANDVVFIL 1v2zA 263 :TLIDVIAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67116 # 1mtpA.295.122 read from T0547.t04.many.frag # found chain 1mtpA in training set T0547 295 :YANDVVFIL 1mtpA 125 :VRATVNADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67117 # 1pp0A.295.98 read from T0547.t04.many.frag # found chain 1pp0A in training set T0547 295 :YANDVVFIL 1pp0A 99 :LAAIILNTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=67118 # 1l1lA.295.520 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 295 :YANDVVFIL 1l1lA 521 :LYKAVVKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67119 # 1qtwA.295.121 read from T0547.t04.many.frag # found chain 1qtwA in training set T0547 295 :YANDVVFIL 1qtwA 122 :CLARIAESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67120 # 1hi9A.295.189 read from T0547.t04.many.frag # found chain 1hi9A in template set T0547 295 :YANDVVFIL 1hi9A 190 :RGRLLTEKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67121 # 1iruK.296.80 read from T0547.t04.many.frag # found chain 1iruK in template set T0547 296 :ANDVVFILK 1iruK 81 :ANFTRRNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67122 # 7odcA.296.251 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 296 :ANDVVFILK 7odcA 252 :TSVINPALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67123 # 1ryp2.296.92 read from T0547.t04.many.frag # found chain 1ryp2 in template set T0547 296 :ANDVVFILK 1ryp2 85 :FEYLATVMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67124 # 1ejbA.296.101 read from T0547.t04.many.frag # found chain 1ejbA in template set T0547 296 :ANDVVFILK 1ejbA 102 :SDSTTHALM Number of specific fragments extracted= 1 number of extra gaps= 0 total=67125 # 1yarA.296.112 read from T0547.t04.many.frag # found chain 1yarA in template set T0547 296 :ANDVVFILK 1yarA 113 :VKRVADQMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67126 # 1cg5B.296.59 read from T0547.t04.many.frag # found chain 1cg5B in training set T0547 296 :ANDVVFILK 1cg5B 60 :ADKVQRALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=67127 # 1pi1A.296.83 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 296 :ANDVVFILK 1pi1A 94 :IDYLMTWVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67128 # 1d0cA.296.171 read from T0547.t04.many.frag # found chain 1d0cA in training set T0547 296 :ANDVVFILK 1d0cA 210 :FTYICNHIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67129 # 1el6A.296.125 read from T0547.t04.many.frag # found chain 1el6A in template set T0547 296 :ANDVVFILK 1el6A 126 :VAKVRVALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67130 # 1vj7A.296.217 read from T0547.t04.many.frag # found chain 1vj7A in template set T0547 296 :ANDVVFILK 1vj7A 218 :VDDIVTKIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67131 # 1knwA.296.244 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 296 :ANDVVFILK 1knwA 245 :YGLWNAARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67132 # 1tqhA.296.127 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 296 :ANDVVFILK 1tqhA 128 :YEGVLEYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67133 # 1msk.296.80 read from T0547.t04.many.frag # found chain 1msk in template set T0547 296 :ANDVVFILK 1msk 977 :FKDANDMLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67134 # 1q9jA.296.303 read from T0547.t04.many.frag # found chain 1q9jA in template set T0547 296 :ANDVVFILK 1q9jA 304 :ASDIVATLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67135 # 2c8mA.296.102 read from T0547.t04.many.frag # found chain 2c8mA in template set T0547 296 :ANDVVFILK 2c8mA 103 :FRTMNEAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67136 # 1ygtA.296.40 read from T0547.t04.many.frag # found chain 1ygtA in training set T0547 296 :ANDVVFILK 1ygtA 41 :TGQVVENCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67137 # 1woqA.296.54 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 296 :ANDVVFILK 1woqA 55 :AEAVALVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67138 # 1s7zA.296.11 read from T0547.t04.many.frag # found chain 1s7zA in template set T0547 296 :ANDVVFILK 1s7zA 11 :FDHAYEMLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67139 # 1qw9A.296.267 read from T0547.t04.many.frag # found chain 1qw9A in training set T0547 296 :ANDVVFILK 1qw9A 268 :IRSVVAIAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67140 # 1j24A.296.121 read from T0547.t04.many.frag # found chain 1j24A in training set T0547 296 :ANDVVFILK 1j24A 122 :AQYIFLIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67141 # 1t0hB.296.194 read from T0547.t04.many.frag # found chain 1t0hB in template set T0547 296 :ANDVVFILK 1t0hB 396 :CEHLADYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67142 # 2anuA.296.85 read from T0547.t04.many.frag # found chain 2anuA in template set T0547 296 :ANDVVFILK 2anuA 74 :LKRLWREQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67143 # 1nnhA.296.17 read from T0547.t04.many.frag # found chain 1nnhA in training set T0547 296 :ANDVVFILK 1nnhA 18 :QTKILEYMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67144 # 1qu9A.296.49 read from T0547.t04.many.frag # found chain 1qu9A in training set T0547 296 :ANDVVFILK 1qu9A 50 :ARQSLDNVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67145 # 1yw4A.296.124 read from T0547.t04.many.frag # found chain 1yw4A in template set T0547 296 :ANDVVFILK 1yw4A 125 :AAELETLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67146 # 1xrsA.296.212 read from T0547.t04.many.frag # found chain 1xrsA in template set T0547 296 :ANDVVFILK 1xrsA 213 :FRLMREALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67147 # 1j7xA.296.46 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 296 :ANDVVFILK 1j7xA 48 :AAKLNYELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67148 # 1pp0A.296.99 read from T0547.t04.many.frag # found chain 1pp0A in training set T0547 296 :ANDVVFILK 1pp0A 100 :AAIILNTFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67149 # 1qtwA.296.122 read from T0547.t04.many.frag # found chain 1qtwA in training set T0547 296 :ANDVVFILK 1qtwA 123 :LARIAESIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67150 # 1ng6A.296.25 read from T0547.t04.many.frag # found chain 1ng6A in training set T0547 296 :ANDVVFILK 1ng6A 26 :VRMVKASLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67151 # 1iruK.297.81 read from T0547.t04.many.frag # found chain 1iruK in template set T0547 297 :NDVVFILKN 1iruK 82 :NFTRRNLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67152 # 1knwA.297.245 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 297 :NDVVFILKN 1knwA 246 :GLWNAAREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67153 # 1cg5B.297.60 read from T0547.t04.many.frag # found chain 1cg5B in training set T0547 297 :NDVVFILKN 1cg5B 61 :DKVQRALGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67154 # 1d0cA.297.172 read from T0547.t04.many.frag # found chain 1d0cA in training set T0547 297 :NDVVFILKN 1d0cA 211 :TYICNHIKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67155 # 1yarA.297.113 read from T0547.t04.many.frag # found chain 1yarA in template set T0547 297 :NDVVFILKN 1yarA 114 :KRVADQMQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67156 # 1pi1A.297.84 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 297 :NDVVFILKN 1pi1A 95 :DYLMTWVQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67157 # 1tqhA.297.128 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 297 :NDVVFILKN 1tqhA 129 :EGVLEYARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67158 # 1ejbA.297.102 read from T0547.t04.many.frag # found chain 1ejbA in template set T0547 297 :NDVVFILKN 1ejbA 103 :DSTTHALMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67159 # 1ygtA.297.41 read from T0547.t04.many.frag # found chain 1ygtA in training set T0547 297 :NDVVFILKN 1ygtA 42 :GQVVENCLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67160 # 1ryp2.297.93 read from T0547.t04.many.frag # found chain 1ryp2 in template set T0547 297 :NDVVFILKN 1ryp2 86 :EYLATVMYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67161 # 7odcA.297.252 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 297 :NDVVFILKN 7odcA 253 :SVINPALDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67162 # 1msk.297.81 read from T0547.t04.many.frag # found chain 1msk in template set T0547 297 :NDVVFILKN 1msk 978 :KDANDMLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67163 # 1nnhA.297.18 read from T0547.t04.many.frag # found chain 1nnhA in training set T0547 297 :NDVVFILKN 1nnhA 19 :TKILEYMTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67164 # 1s7zA.297.12 read from T0547.t04.many.frag # found chain 1s7zA in template set T0547 297 :NDVVFILKN 1s7zA 12 :DHAYEMLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67165 # 1el6A.297.126 read from T0547.t04.many.frag # found chain 1el6A in template set T0547 297 :NDVVFILKN 1el6A 127 :AKVRVALQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67166 # 1q9jA.297.304 read from T0547.t04.many.frag # found chain 1q9jA in template set T0547 297 :NDVVFILKN 1q9jA 305 :SDIVATLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67167 # 2c8mA.297.103 read from T0547.t04.many.frag # found chain 2c8mA in template set T0547 297 :NDVVFILKN 2c8mA 104 :RTMNEAVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67168 # 1qw9A.297.268 read from T0547.t04.many.frag # found chain 1qw9A in training set T0547 297 :NDVVFILKN 1qw9A 269 :RSVVAIADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67169 # 1vj7A.297.218 read from T0547.t04.many.frag # found chain 1vj7A in template set T0547 297 :NDVVFILKN 1vj7A 219 :DDIVTKIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=67170 # 1l1lA.297.522 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 297 :NDVVFILKN 1l1lA 523 :KAVVKADQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67171 # 1xrsA.297.213 read from T0547.t04.many.frag # found chain 1xrsA in template set T0547 297 :NDVVFILKN 1xrsA 214 :RLMREALDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67172 # 1t0hB.297.195 read from T0547.t04.many.frag # found chain 1t0hB in template set T0547 297 :NDVVFILKN 1t0hB 397 :EHLADYLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67173 # 1ufyA.297.20 read from T0547.t04.many.frag # found chain 1ufyA in training set T0547 297 :NDVVFILKN 1ufyA 21 :QATRELLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67174 # 1j7xA.297.47 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 297 :NDVVFILKN 1j7xA 49 :AKLNYELQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=67175 # 1hi9A.297.191 read from T0547.t04.many.frag # found chain 1hi9A in template set T0547 297 :NDVVFILKN 1hi9A 192 :RLLTEKTAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=67176 1aocA expands to /projects/compbio/data/pdb/1aoc.pdb.gz 1aocA:# 1aocA.297.27 read from T0547.t04.many.frag # adding 1aocA to template set # found chain 1aocA in template set T0547 297 :NDVVFILKN 1aocA 28 :DKIEKAVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67177 # 1ng6A.297.26 read from T0547.t04.many.frag # found chain 1ng6A in training set T0547 297 :NDVVFILKN 1ng6A 27 :RMVKASLQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67178 # 1zr5A.297.169 read from T0547.t04.many.frag # found chain 1zr5A in template set T0547 297 :NDVVFILKN 1zr5A 326 :QLILKAISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=67179 # 2anuA.297.86 read from T0547.t04.many.frag # found chain 2anuA in template set T0547 297 :NDVVFILKN 2anuA 75 :KRLWREQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67180 # 1vrmA.297.45 read from T0547.t04.many.frag # found chain 1vrmA in training set T0547 297 :NDVVFILKN 1vrmA 73 :EAILEDMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67181 # 1iruK.298.82 read from T0547.t04.many.frag # found chain 1iruK in template set T0547 298 :DVVFILKNI 1iruK 83 :FTRRNLADC Number of specific fragments extracted= 1 number of extra gaps= 0 total=67182 # 1ryp2.298.94 read from T0547.t04.many.frag # found chain 1ryp2 in template set T0547 298 :DVVFILKNI 1ryp2 87 :YLATVMYQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67183 # 1ejbA.298.103 read from T0547.t04.many.frag # found chain 1ejbA in template set T0547 298 :DVVFILKNI 1ejbA 104 :STTHALMNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67184 # 1pi1A.298.85 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 298 :DVVFILKNI 1pi1A 96 :YLMTWVQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67185 # 7odcA.298.253 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 298 :DVVFILKNI 7odcA 254 :VINPALDKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67186 # 1yarA.298.114 read from T0547.t04.many.frag # found chain 1yarA in template set T0547 298 :DVVFILKNI 1yarA 115 :RVADQMQQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67187 # 1vj7A.298.219 read from T0547.t04.many.frag # found chain 1vj7A in template set T0547 298 :DVVFILKNI 1vj7A 220 :DIVTKIKSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67188 # 1d0cA.298.173 read from T0547.t04.many.frag # found chain 1d0cA in training set T0547 298 :DVVFILKNI 1d0cA 212 :YICNHIKYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67189 # 1el6A.298.127 read from T0547.t04.many.frag # found chain 1el6A in template set T0547 298 :DVVFILKNI 1el6A 128 :KVRVALQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67190 # 1cg5B.298.61 read from T0547.t04.many.frag # found chain 1cg5B in training set T0547 298 :DVVFILKNI 1cg5B 62 :KVQRALGEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67191 # 1tqhA.298.129 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 298 :DVVFILKNI 1tqhA 130 :GVLEYAREY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67192 # 1knwA.298.246 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 298 :DVVFILKNI 1knwA 247 :LWNAAREQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67193 # 1msk.298.82 read from T0547.t04.many.frag # found chain 1msk in template set T0547 298 :DVVFILKNI 1msk 979 :DANDMLDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67194 # 1ygtA.298.42 read from T0547.t04.many.frag # found chain 1ygtA in training set T0547 298 :DVVFILKNI 1ygtA 43 :QVVENCLTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67195 # 1s7zA.298.13 read from T0547.t04.many.frag # found chain 1s7zA in template set T0547 298 :DVVFILKNI 1s7zA 13 :HAYEMLKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67196 # 1u14A.298.54 read from T0547.t04.many.frag # found chain 1u14A in training set T0547 298 :DVVFILKNI 1u14A 54 :GARNRVDNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67197 # 1qw9A.298.269 read from T0547.t04.many.frag # found chain 1qw9A in training set T0547 298 :DVVFILKNI 1qw9A 270 :SVVAIADYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67198 # 1woqA.298.56 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 298 :DVVFILKNI 1woqA 57 :AVALVVAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67199 # 1nnhA.298.19 read from T0547.t04.many.frag # found chain 1nnhA in training set T0547 298 :DVVFILKNI 1nnhA 20 :KILEYMTDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=67200 # 2c8mA.298.104 read from T0547.t04.many.frag # found chain 2c8mA in template set T0547 298 :DVVFILKNI 2c8mA 105 :TMNEAVVNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=67201 # 1l1lA.298.523 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 298 :DVVFILKNI 1l1lA 524 :AVVKADQDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67202 # 1xrsA.298.214 read from T0547.t04.many.frag # found chain 1xrsA in template set T0547 298 :DVVFILKNI 1xrsA 215 :LMREALDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67203 # 1t0hB.298.196 read from T0547.t04.many.frag # found chain 1t0hB in template set T0547 298 :DVVFILKNI 1t0hB 398 :HLADYLEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67204 # 1qu9A.298.51 read from T0547.t04.many.frag # found chain 1qu9A in training set T0547 298 :DVVFILKNI 1qu9A 52 :QSLDNVKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67205 # 1ng6A.298.27 read from T0547.t04.many.frag # found chain 1ng6A in training set T0547 298 :DVVFILKNI 1ng6A 28 :MVKASLQNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67206 # 1zr5A.298.170 read from T0547.t04.many.frag # found chain 1zr5A in template set T0547 298 :DVVFILKNI 1zr5A 327 :LILKAISSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67207 # 1j24A.298.123 read from T0547.t04.many.frag # found chain 1j24A in training set T0547 298 :DVVFILKNI 1j24A 124 :YIFLIAKRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67208 # 1ufyA.298.21 read from T0547.t04.many.frag # found chain 1ufyA in training set T0547 298 :DVVFILKNI 1ufyA 22 :ATRELLLKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=67209 # 1q9jA.298.305 read from T0547.t04.many.frag # found chain 1q9jA in template set T0547 298 :DVVFILKNI 1q9jA 306 :DIVATLRAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67210 # 1bu6O.298.54 read from T0547.t04.many.frag # found chain 1bu6O in template set T0547 298 :DVVFILKNI 1bu6O 55 :TQSSTLVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67211 # 1iruK.299.83 read from T0547.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0547)I306 (1iruK)C91 because G (3-10) conformation "forbidden" or filtered. T0547 299 :VVFILKN 1iruK 84 :TRRNLAD T0547 307 :A 1iruK 92 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=67213 # 1pi1A.299.86 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 299 :VVFILKNIA 1pi1A 97 :LMTWVQDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67214 # 7odcA.299.254 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A307 (7odcA)F263 because D (zeta) conformation "forbidden" or filtered. T0547 299 :VVFILKNI 7odcA 255 :INPALDKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=67215 # 1cg5B.299.62 read from T0547.t04.many.frag # found chain 1cg5B in training set T0547 299 :VVFILKNIA 1cg5B 63 :VQRALGEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67216 # 1yarA.299.115 read from T0547.t04.many.frag # found chain 1yarA in template set T0547 299 :VVFILKNIA 1yarA 116 :VADQMQQYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67217 # 1d0cA.299.174 read from T0547.t04.many.frag # found chain 1d0cA in training set T0547 299 :VVFILKNIA 1d0cA 213 :ICNHIKYAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67218 # 1ryp2.299.95 read from T0547.t04.many.frag # found chain 1ryp2 in template set T0547 299 :VVFILKNIA 1ryp2 88 :LATVMYQRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67219 # 1el6A.299.128 read from T0547.t04.many.frag # found chain 1el6A in template set T0547 299 :VVFILKNIA 1el6A 129 :VRVALQEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67220 # 1ejbA.299.104 read from T0547.t04.many.frag # found chain 1ejbA in template set T0547 299 :VVFILKNIA 1ejbA 105 :TTHALMNLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67221 # 1u14A.299.55 read from T0547.t04.many.frag # found chain 1u14A in training set T0547 299 :VVFILKNIA 1u14A 55 :ARNRVDNAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67222 # 1msk.299.83 read from T0547.t04.many.frag # found chain 1msk in template set T0547 299 :VVFILKNIA 1msk 980 :ANDMLDKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=67223 # 1s7zA.299.14 read from T0547.t04.many.frag # found chain 1s7zA in template set T0547 299 :VVFILKNIA 1s7zA 14 :AYEMLKENI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67224 # 1woqA.299.57 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 299 :VVFILKNIA 1woqA 58 :VALVVAELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=67225 # 1tqhA.299.130 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 299 :VVFILKNIA 1tqhA 131 :VLEYAREYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67226 # 1vj7A.299.220 read from T0547.t04.many.frag # found chain 1vj7A in template set T0547 299 :VVFILKNIA 1vj7A 221 :IVTKIKSYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67227 # 1xrsA.299.215 read from T0547.t04.many.frag # found chain 1xrsA in template set T0547 299 :VVFILKNIA 1xrsA 216 :MREALDKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=67228 # 1t0hB.299.197 read from T0547.t04.many.frag # found chain 1t0hB in template set T0547 299 :VVFILKNIA 1t0hB 399 :LADYLEAYW Number of specific fragments extracted= 1 number of extra gaps= 0 total=67229 # 1ng6A.299.28 read from T0547.t04.many.frag # found chain 1ng6A in training set T0547 299 :VVFILKNIA 1ng6A 29 :VKASLQNEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67230 # 1l1lA.299.524 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 299 :VVFILKNIA 1l1lA 525 :VVKADQDYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=67231 # 1j24A.299.124 read from T0547.t04.many.frag # found chain 1j24A in training set T0547 299 :VVFILKNIA 1j24A 125 :IFLIAKREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67232 # 1qw9A.299.270 read from T0547.t04.many.frag # found chain 1qw9A in training set T0547 299 :VVFILKNIA 1qw9A 271 :VVAIADYVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67233 # 1nnhA.299.20 read from T0547.t04.many.frag # found chain 1nnhA in training set T0547 299 :VVFILKNIA 1nnhA 21 :ILEYMTDFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=67234 # 1knwA.299.247 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 299 :VVFILKNIA 1knwA 248 :WNAAREQIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67235 # 1ufyA.299.22 read from T0547.t04.many.frag # found chain 1ufyA in training set T0547 299 :VVFILKNIA 1ufyA 23 :TRELLLKML Number of specific fragments extracted= 1 number of extra gaps= 0 total=67236 # 1vqvA.299.99 read from T0547.t04.many.frag # found chain 1vqvA in template set T0547 299 :VVFILKNIA 1vqvA 100 :FYIGVKRAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=67237 # 1aocA.299.29 read from T0547.t04.many.frag # found chain 1aocA in template set T0547 299 :VVFILKNIA 1aocA 30 :IEKAVEAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67238 # 1bu6O.299.55 read from T0547.t04.many.frag # found chain 1bu6O in template set T0547 299 :VVFILKNIA 1bu6O 56 :QSSTLVEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67239 # 1yn9A.299.99 read from T0547.t04.many.frag # found chain 1yn9A in training set T0547 299 :VVFILKNIA 1yn9A 99 :FIDTVKEFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67240 # 1zr5A.299.171 read from T0547.t04.many.frag # found chain 1zr5A in template set T0547 299 :VVFILKNIA 1zr5A 328 :ILKAISSYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=67241 # 1yw4A.299.127 read from T0547.t04.many.frag # found chain 1yw4A in template set T0547 299 :VVFILKNIA 1yw4A 128 :LETLAAEFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=67242 # 1ryp2.300.96 read from T0547.t04.many.frag # found chain 1ryp2 in template set T0547 300 :VFILKNIAE 1ryp2 89 :ATVMYQRRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=67243 # 1iruK.300.84 read from T0547.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0547)I306 (1iruK)C91 because G (3-10) conformation "forbidden" or filtered. T0547 300 :VFILKN 1iruK 85 :RRNLAD T0547 307 :AE 1iruK 92 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=67245 # 1ejbA.300.105 read from T0547.t04.many.frag # found chain 1ejbA in template set T0547 300 :VFILKNIAE 1ejbA 106 :THALMNLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67246 # 1vj7A.300.221 read from T0547.t04.many.frag # found chain 1vj7A in template set T0547 300 :VFILKNIAE 1vj7A 222 :VTKIKSYTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67247 # 1yarA.300.116 read from T0547.t04.many.frag # found chain 1yarA in template set T0547 300 :VFILKNIAE 1yarA 117 :ADQMQQYTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67248 # 1pi1A.300.87 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 300 :VFILKNIAE 1pi1A 98 :MTWVQDQLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67249 # 7odcA.300.255 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A307 (7odcA)F263 because D (zeta) conformation "forbidden" or filtered. T0547 300 :VFILKNI 7odcA 256 :NPALDKY T0547 308 :E 7odcA 264 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=67251 # 1cg5B.300.63 read from T0547.t04.many.frag # found chain 1cg5B in training set T0547 300 :VFILKNIAE 1cg5B 64 :QRALGEAID Number of specific fragments extracted= 1 number of extra gaps= 0 total=67252 # 1tqhA.300.131 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 300 :VFILKNIAE 1tqhA 132 :LEYAREYKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67253 # 1el6A.300.129 read from T0547.t04.many.frag # found chain 1el6A in template set T0547 300 :VFILKNIAE 1el6A 130 :RVALQEAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67254 # 1d0cA.300.175 read from T0547.t04.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)E308 (1d0cA)N222 because L (left) conformation "forbidden" or filtered. T0547 300 :VFILKNIA 1d0cA 214 :CNHIKYAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=67255 # 1woqA.300.58 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 300 :VFILKNIAE 1woqA 59 :ALVVAELSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67256 # 1msk.300.84 read from T0547.t04.many.frag # found chain 1msk in template set T0547 300 :VFILKNIAE 1msk 981 :NDMLDKLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67257 # 1s7zA.300.15 read from T0547.t04.many.frag # found chain 1s7zA in template set T0547 300 :VFILKNIAE 1s7zA 15 :YEMLKENIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67258 # 1nnhA.300.21 read from T0547.t04.many.frag # found chain 1nnhA in training set T0547 300 :VFILKNIAE 1nnhA 22 :LEYMTDFFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67259 # 1ygtA.300.44 read from T0547.t04.many.frag # found chain 1ygtA in training set T0547 300 :VFILKNIAE 1ygtA 45 :VENCLTVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67260 # 1u14A.300.56 read from T0547.t04.many.frag # found chain 1u14A in training set T0547 300 :VFILKNIAE 1u14A 56 :RNRVDNARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67261 # 1l1lA.300.525 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 300 :VFILKNIAE 1l1lA 526 :VKADQDYSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67262 # 1xrsA.300.216 read from T0547.t04.many.frag # found chain 1xrsA in template set T0547 300 :VFILKNIAE 1xrsA 217 :REALDKVGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67263 # 1ng6A.300.29 read from T0547.t04.many.frag # found chain 1ng6A in training set T0547 300 :VFILKNIAE 1ng6A 30 :KASLQNEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67264 # 1t0hB.300.198 read from T0547.t04.many.frag # found chain 1t0hB in template set T0547 300 :VFILKNIAE 1t0hB 400 :ADYLEAYWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67265 # 1aocA.300.30 read from T0547.t04.many.frag # found chain 1aocA in template set T0547 300 :VFILKNIAE 1aocA 31 :EKAVEAVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67266 # 1fjgT.300.84 read from T0547.t04.many.frag # found chain 1fjgT in template set T0547 300 :VFILKNIAE 1fjgT 85 :MRKVRQLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67267 # 1ufyA.300.23 read from T0547.t04.many.frag # found chain 1ufyA in training set T0547 300 :VFILKNIAE 1ufyA 24 :RELLLKMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67268 # 1bu6O.300.56 read from T0547.t04.many.frag # found chain 1bu6O in template set T0547 300 :VFILKNIAE 1bu6O 57 :SSTLVEVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67269 # 1vqvA.300.100 read from T0547.t04.many.frag # found chain 1vqvA in template set T0547 300 :VFILKNIAE 1vqvA 101 :YIGVKRACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67270 # 1knwA.300.248 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 300 :VFILKNIAE 1knwA 249 :NAAREQIAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67271 # 1j24A.300.125 read from T0547.t04.many.frag # found chain 1j24A in training set T0547 300 :VFILKNIAE 1j24A 126 :FLIAKREQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67272 # 1zr5A.300.172 read from T0547.t04.many.frag # found chain 1zr5A in template set T0547 300 :VFILKNIAE 1zr5A 329 :LKAISSYFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67273 # 1cxqA.300.116 read from T0547.t04.many.frag # found chain 1cxqA in training set T0547 300 :VFILKNIAE 1cxqA 164 :KDKIRVLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67274 # 1vj7A.301.222 read from T0547.t04.many.frag # found chain 1vj7A in template set T0547 301 :FILKNIAEQ 1vj7A 223 :TKIKSYTTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67275 # 1tqhA.301.132 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 301 :FILKNIAEQ 1tqhA 133 :EYAREYKKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67276 # 1nnhA.301.22 read from T0547.t04.many.frag # found chain 1nnhA in training set T0547 301 :FILKNIAEQ 1nnhA 23 :EYMTDFFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67277 # 1iruK.301.85 read from T0547.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0547)Q309 (1iruK)S94 because Y (epsilon') conformation "forbidden" or filtered. T0547 301 :FILKNIAE 1iruK 86 :RNLADCLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=67278 # 1yarA.301.117 read from T0547.t04.many.frag # found chain 1yarA in template set T0547 301 :FILKNIAEQ 1yarA 118 :DQMQQYTQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67279 # 1l1lA.301.526 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 301 :FILKNIAEQ 1l1lA 527 :KADQDYSKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67280 # 1s7zA.301.16 read from T0547.t04.many.frag # found chain 1s7zA in template set T0547 301 :FILKNIAEQ 1s7zA 16 :EMLKENIRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67281 # 7odcA.301.256 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A307 (7odcA)F263 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E308 (7odcA)P264 because P (beta_P) conformation "forbidden" or filtered. T0547 301 :FILKNI 7odcA 257 :PALDKY T0547 309 :Q 7odcA 265 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=67283 # 1ejbA.301.106 read from T0547.t04.many.frag # found chain 1ejbA in template set T0547 301 :FILKNIAEQ 1ejbA 107 :HALMNLQEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67284 # 1fjgT.301.85 read from T0547.t04.many.frag # found chain 1fjgT in template set T0547 301 :FILKNIAEQ 1fjgT 86 :RKVRQLLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67285 # 1ryp2.301.97 read from T0547.t04.many.frag # found chain 1ryp2 in template set T0547 301 :FILKNIAEQ 1ryp2 90 :TVMYQRRSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67286 # 1cg5B.301.64 read from T0547.t04.many.frag # found chain 1cg5B in training set T0547 301 :FILKNIAEQ 1cg5B 65 :RALGEAIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67287 # 1xrsA.301.217 read from T0547.t04.many.frag # found chain 1xrsA in template set T0547 301 :FILKNIAEQ 1xrsA 218 :EALDKVGAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67288 # 1el6A.301.130 read from T0547.t04.many.frag # found chain 1el6A in template set T0547 301 :FILKNIAEQ 1el6A 131 :VALQEAIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=67289 # 1t0hB.301.199 read from T0547.t04.many.frag # found chain 1t0hB in template set T0547 301 :FILKNIAEQ 1t0hB 401 :DYLEAYWKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67290 # 1msk.301.85 read from T0547.t04.many.frag # found chain 1msk in template set T0547 301 :FILKNIAEQ 1msk 982 :DMLDKLSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67291 # 1knwA.301.249 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 301 :FILKNIAEQ 1knwA 250 :AAREQIARH Number of specific fragments extracted= 1 number of extra gaps= 0 total=67292 # 1vqvA.301.101 read from T0547.t04.many.frag # found chain 1vqvA in template set T0547 301 :FILKNIAEQ 1vqvA 102 :IGVKRACEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=67293 # 1wv8A.301.42 read from T0547.t04.many.frag # found chain 1wv8A in template set T0547 301 :FILKNIAEQ 1wv8A 43 :VMVPELLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67294 # 1ygtA.301.45 read from T0547.t04.many.frag # found chain 1ygtA in training set T0547 301 :FILKNIAEQ 1ygtA 46 :ENCLTVLTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67295 # 1u14A.301.57 read from T0547.t04.many.frag # found chain 1u14A in training set T0547 301 :FILKNIAEQ 1u14A 57 :NRVDNARRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67296 # 1aocA.301.31 read from T0547.t04.many.frag # found chain 1aocA in template set T0547 301 :FILKNIAEQ 1aocA 32 :KAVEAVAQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67297 # 1yn9A.301.101 read from T0547.t04.many.frag # found chain 1yn9A in training set T0547 301 :FILKNIAEQ 1yn9A 101 :DTVKEFTEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67298 # 1ng6A.301.30 read from T0547.t04.many.frag # found chain 1ng6A in training set T0547 301 :FILKNIAEQ 1ng6A 31 :ASLQNEAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67299 # 1woqA.301.59 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 301 :FILKNIAEQ 1woqA 60 :LVVAELSAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67300 # 1yw4A.301.129 read from T0547.t04.many.frag # found chain 1yw4A in template set T0547 301 :FILKNIAEQ 1yw4A 130 :TLAAEFFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=67301 # 2f5gA.301.37 read from T0547.t04.many.frag # found chain 2f5gA in training set T0547 301 :FILKNIAEQ 2f5gA 38 :EVLKSIAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67302 # 1cxqA.301.117 read from T0547.t04.many.frag # found chain 1cxqA in training set T0547 301 :FILKNIAEQ 1cxqA 165 :DKIRVLAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=67303 # 1pi1A.301.88 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 301 :FILKNIAEQ 1pi1A 99 :TWVQDQLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67304 # 1d0cA.301.176 read from T0547.t04.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)E308 (1d0cA)N222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q309 (1d0cA)R223 because L (left) conformation "forbidden" or filtered. T0547 301 :FILKNIA 1d0cA 215 :NHIKYAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=67305 # 1vj7A.302.223 read from T0547.t04.many.frag # found chain 1vj7A in template set T0547 302 :ILKNIAEQK 1vj7A 224 :KIKSYTTEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67306 # 1nnhA.302.23 read from T0547.t04.many.frag # found chain 1nnhA in training set T0547 302 :ILKNIAEQK 1nnhA 24 :YMTDFFVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67307 # 1s7zA.302.17 read from T0547.t04.many.frag # found chain 1s7zA in template set T0547 302 :ILKNIAEQK 1s7zA 17 :MLKENIRYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67308 # 1tqhA.302.133 read from T0547.t04.many.frag # found chain 1tqhA in training set T0547 302 :ILKNIAEQK 1tqhA 134 :YAREYKKRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67309 # 1fjgT.302.86 read from T0547.t04.many.frag # found chain 1fjgT in template set T0547 302 :ILKNIAEQK 1fjgT 87 :KVRQLLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67310 # 7odcA.302.257 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 302 :ILKNIAEQK 7odcA 258 :ALDKYFPSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67311 # 1yarA.302.118 read from T0547.t04.many.frag # found chain 1yarA in template set T0547 302 :ILKNIAEQK 1yarA 119 :QMQQYTQYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=67312 # 1ygtA.302.46 read from T0547.t04.many.frag # found chain 1ygtA in training set T0547 302 :ILKNIAEQK 1ygtA 47 :NCLTVLTKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67313 # 1xrsA.302.218 read from T0547.t04.many.frag # found chain 1xrsA in template set T0547 302 :ILKNIAEQK 1xrsA 219 :ALDKVGAEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67314 # 1vqvA.302.102 read from T0547.t04.many.frag # found chain 1vqvA in template set T0547 302 :ILKNIAEQK 1vqvA 103 :GVKRACEFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67315 # 1iruK.302.86 read from T0547.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0547)Q309 (1iruK)S94 because Y (epsilon') conformation "forbidden" or filtered. T0547 302 :ILKNIAE 1iruK 87 :NLADCLR T0547 310 :K 1iruK 95 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=67317 # 1i88A.302.281 read from T0547.t04.many.frag # found chain 1i88A in training set T0547 302 :ILKNIAEQK 1i88A 282 :ALVEAFEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67318 # 1ryp2.302.98 read from T0547.t04.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0547)K310 (1ryp2)M99 because L (left) conformation "forbidden" or filtered. T0547 302 :ILKNIAEQ 1ryp2 91 :VMYQRRSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=67319 # 1bu6O.302.58 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)K310 (1bu6O)A67 because G (3-10) conformation "forbidden" or filtered. T0547 302 :ILKNIAEQ 1bu6O 59 :TLVEVLTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=67320 # 1wv8A.302.43 read from T0547.t04.many.frag # found chain 1wv8A in template set T0547 302 :ILKNIAEQK 1wv8A 44 :MVPELLEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67321 # 1cxqA.302.118 read from T0547.t04.many.frag # found chain 1cxqA in training set T0547 302 :ILKNIAEQK 1cxqA 166 :KIRVLAEGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67322 # 1t0hB.302.200 read from T0547.t04.many.frag # found chain 1t0hB in template set T0547 302 :ILKNIAEQK 1t0hB 402 :YLEAYWKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=67323 # 1l1lA.302.527 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 302 :ILKNIAEQK 1l1lA 528 :ADQDYSKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67324 # 1ejbA.302.107 read from T0547.t04.many.frag # found chain 1ejbA in template set T0547 302 :ILKNIAEQK 1ejbA 108 :ALMNLQEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67325 # 1ui0A.302.179 read from T0547.t04.many.frag # found chain 1ui0A in training set T0547 302 :ILKNIAEQK 1ui0A 180 :EVKRALDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67326 # 1cg5B.302.65 read from T0547.t04.many.frag # found chain 1cg5B in training set T0547 302 :ILKNIAEQK 1cg5B 66 :ALGEAIDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67327 # 1yw4A.302.130 read from T0547.t04.many.frag # found chain 1yw4A in template set T0547 302 :ILKNIAEQK 1yw4A 131 :LAAEFFAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67328 2a2lA expands to /projects/compbio/data/pdb/2a2l.pdb.gz 2a2lA:# 2a2lA.302.22 read from T0547.t04.many.frag # adding 2a2lA to template set # found chain 2a2lA in template set T0547 302 :ILKNIAEQK 2a2lA 24 :AVEKKATEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67329 # 1ng6A.302.31 read from T0547.t04.many.frag # found chain 1ng6A in training set T0547 302 :ILKNIAEQK 1ng6A 32 :SLQNEAIKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67330 # 1p4cA.302.331 read from T0547.t04.many.frag # found chain 1p4cA in training set T0547 302 :ILKNIAEQK 1p4cA 332 :DIDRTLAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67331 # 1e19A.302.95 read from T0547.t04.many.frag # found chain 1e19A in training set T0547 302 :ILKNIAEQK 1e19A 96 :ALKNELRKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67332 # 1el6A.302.131 read from T0547.t04.many.frag # found chain 1el6A in template set Warning: unaligning (T0547)K310 (1el6A)F140 because L (left) conformation "forbidden" or filtered. T0547 302 :ILKNIAEQ 1el6A 132 :ALQEAIAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=67333 # 1ysjA.302.294 read from T0547.t04.many.frag # found chain 1ysjA in template set T0547 302 :ILKNIAEQK 1ysjA 271 :VAEGIAAGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=67334 # 2f5gA.302.38 read from T0547.t04.many.frag # found chain 2f5gA in training set T0547 302 :ILKNIAEQK 2f5gA 39 :VLKSIAEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67335 # 1pi1A.302.89 read from T0547.t04.many.frag # found chain 1pi1A in template set T0547 302 :ILKNIAEQK 1pi1A 100 :WVQDQLDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67336 # 1i88A.303.282 read from T0547.t04.many.frag # found chain 1i88A in training set Warning: unaligning (T0547)K311 (1i88A)G291 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1i88A 283 :LVEAFEPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=67337 # 1nnhA.303.24 read from T0547.t04.many.frag # found chain 1nnhA in training set Warning: unaligning (T0547)K311 (1nnhA)G33 because T (delta_L) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1nnhA 25 :MTDFFVKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=67338 # 1fjgT.303.87 read from T0547.t04.many.frag # found chain 1fjgT in template set Warning: unaligning (T0547)K311 (1fjgT)G96 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1fjgT 88 :VRQLLEAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=67339 # 1w66A.303.114 read from T0547.t04.many.frag # found chain 1w66A in training set T0547 303 :LKNIAEQKK 1w66A 113 :LIQVCADLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=67340 # 1wv8A.303.44 read from T0547.t04.many.frag # found chain 1wv8A in template set T0547 303 :LKNIAEQKK 1wv8A 45 :VPELLEENG Number of specific fragments extracted= 1 number of extra gaps= 0 total=67341 # 1aocA.303.33 read from T0547.t04.many.frag # found chain 1aocA in template set T0547 303 :LKNIAEQKK 1aocA 34 :VEAVAQESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=67342 # 1cxqA.303.119 read from T0547.t04.many.frag # found chain 1cxqA in training set T0547 303 :LKNIAEQKK 1cxqA 167 :IRVLAEGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=67343 # 1vqvA.303.103 read from T0547.t04.many.frag # found chain 1vqvA in template set T0547 303 :LKNIAEQKK 1vqvA 104 :VKRACEFYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67344 # 1bu6O.303.59 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)K311 (1bu6O)D68 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1bu6O 60 :LVEVLTKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=67345 # 1tqhA.303.134 read from T0547.t04.many.frag # found chain 1tqhA in training set Warning: unaligning (T0547)K311 (1tqhA)G143 because T (delta_L) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1tqhA 135 :AREYKKRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=67346 # 1qd1A.303.110 read from T0547.t04.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)K311 (1qd1A)G120 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1qd1A 112 :GQRLAEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=67347 # 1qu9A.303.56 read from T0547.t04.many.frag # found chain 1qu9A in training set T0547 303 :LKNIAEQKK 1qu9A 57 :VKAIVEAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=67348 # 1ygtA.303.47 read from T0547.t04.many.frag # found chain 1ygtA in training set Warning: unaligning (T0547)K311 (1ygtA)Q56 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1ygtA 48 :CLTVLTKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=67349 # 1vj7A.303.224 read from T0547.t04.many.frag # found chain 1vj7A in template set Warning: unaligning (T0547)K311 (1vj7A)G233 because T (delta_L) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1vj7A 225 :IKSYTTEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=67350 # 1tca.303.86 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)K311 (1tca)G95 because T (delta_L) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1tca 87 :ITALYAGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=67351 # 1l1lA.303.528 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 303 :LKNIAEQKK 1l1lA 529 :DQDYSKTLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=67352 # 1t0hB.303.201 read from T0547.t04.many.frag # found chain 1t0hB in template set Warning: unaligning (T0547)K310 (1t0hB)T410 because G (3-10) conformation "forbidden" or filtered. T0547 303 :LKNIAEQ 1t0hB 403 :LEAYWKA T0547 311 :K 1t0hB 411 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=67354 # 1ufyA.303.26 read from T0547.t04.many.frag # found chain 1ufyA in training set Warning: unaligning (T0547)K310 (1ufyA)N34 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1ufyA)G35 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQ 1ufyA 27 :LLKMLEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=67355 # 1knwA.303.251 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 303 :LKNIAEQKK 1knwA 252 :REQIARHLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=67356 # 1ryp2.303.99 read from T0547.t04.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0547)K310 (1ryp2)M99 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQ 1ryp2 92 :MYQRRSK T0547 311 :K 1ryp2 100 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=67358 # 2bjvA.303.193 read from T0547.t04.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)K310 (2bjvA)I201 because G (3-10) conformation "forbidden" or filtered. T0547 303 :LKNIAEQ 2bjvA 194 :AIQMCRE T0547 311 :K 2bjvA 202 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=67360 # 1evlA.303.199 read from T0547.t04.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)K311 (1evlA)N449 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1evlA 441 :LAVALEEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=67361 # 1jyhA.303.32 read from T0547.t04.many.frag # found chain 1jyhA in training set Warning: unaligning (T0547)K311 (1jyhA)N41 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1jyhA 33 :LMMWVDSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=67362 # 1s7zA.303.18 read from T0547.t04.many.frag # found chain 1s7zA in template set Warning: unaligning (T0547)K311 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1s7zA 18 :LKENIRYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=67363 # 1xrsA.303.219 read from T0547.t04.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)K311 (1xrsA)G228 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1xrsA 220 :LDKVGAEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=67364 # 1bykA.303.137 read from T0547.t04.many.frag # found chain 1bykA in template set T0547 303 :LKNIAEQKK 1bykA 198 :YLAFCKAHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67365 # 1wkcA.303.29 read from T0547.t04.many.frag # found chain 1wkcA in training set Warning: unaligning (T0547)K311 (1wkcA)G38 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1wkcA 30 :LLPWLRER Number of specific fragments extracted= 1 number of extra gaps= 1 total=67366 # 1ejbA.303.108 read from T0547.t04.many.frag # found chain 1ejbA in template set Warning: unaligning (T0547)K311 (1ejbA)D117 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1ejbA 109 :LMNLQEKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=67367 1qhtA expands to /projects/compbio/data/pdb/1qht.pdb.gz 1qhtA:# 1qhtA.303.218 read from T0547.t04.many.frag # adding 1qhtA to template set # found chain 1qhtA in template set Warning: unaligning (T0547)K311 (1qhtA)G227 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1qhtA 219 :LKKRCEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=67368 # 1nv8A.303.230 read from T0547.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)K311 (1nv8A)D237 because P (beta_P) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1nv8A 229 :YREFFGRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=67369 # 1nnhA.304.25 read from T0547.t04.many.frag # found chain 1nnhA in training set Warning: unaligning (T0547)K311 (1nnhA)G33 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1nnhA 26 :TDFFVKE T0547 312 :D 1nnhA 34 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=67371 # 1w66A.304.115 read from T0547.t04.many.frag # found chain 1w66A in training set Warning: unaligning (T0547)K311 (1w66A)G121 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1w66A 114 :IQVCADL T0547 312 :D 1w66A 122 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=67373 # 1i88A.304.283 read from T0547.t04.many.frag # found chain 1i88A in training set Warning: unaligning (T0547)K311 (1i88A)G291 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1i88A)I292 because E (beta_S) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1i88A 284 :VEAFEPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=67374 # 1wv8A.304.45 read from T0547.t04.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)K311 (1wv8A)G53 because N (gamma') conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1wv8A 46 :PELLEEN T0547 312 :D 1wv8A 54 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=67376 # 1e19A.304.97 read from T0547.t04.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)K311 (1e19A)G105 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1e19A)M106 because E (beta_S) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1e19A 98 :KNELRKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=67377 # 1fjgT.304.88 read from T0547.t04.many.frag # found chain 1fjgT in template set T0547 304 :KNIAEQKKD 1fjgT 89 :RQLLEAAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67378 # 1cxqA.304.120 read from T0547.t04.many.frag # found chain 1cxqA in training set Warning: unaligning (T0547)K311 (1cxqA)G175 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1cxqA 168 :RVLAEGD T0547 312 :D 1cxqA 176 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=67380 # 2bjvA.304.194 read from T0547.t04.many.frag # found chain 2bjvA in training set T0547 304 :KNIAEQKKD 2bjvA 195 :IQMCREIKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67381 # 1vj7A.304.225 read from T0547.t04.many.frag # found chain 1vj7A in template set Warning: unaligning (T0547)K311 (1vj7A)G233 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1vj7A 226 :KSYTTEQ T0547 312 :D 1vj7A 234 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=67383 # 1evlA.304.200 read from T0547.t04.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)K311 (1evlA)N449 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1evlA 442 :AVALEEN T0547 312 :D 1evlA 450 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=67385 # 1aocA.304.34 read from T0547.t04.many.frag # found chain 1aocA in template set T0547 304 :KNIAEQKKD 1aocA 35 :EAVAQESGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67386 # 1qhtA.304.219 read from T0547.t04.many.frag # found chain 1qhtA in template set T0547 304 :KNIAEQKKD 1qhtA 220 :KKRCEELGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67387 # 1ygtA.304.48 read from T0547.t04.many.frag # found chain 1ygtA in training set Warning: unaligning (T0547)K311 (1ygtA)Q56 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1ygtA)K57 because P (beta_P) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1ygtA 49 :LTVLTKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=67388 # 2a2lA.304.24 read from T0547.t04.many.frag # found chain 2a2lA in template set Warning: unaligning (T0547)K311 (2a2lA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (2a2lA)V34 because E (beta_S) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 2a2lA 26 :EKKATEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=67389 # 1s7zA.304.19 read from T0547.t04.many.frag # found chain 1s7zA in template set Warning: unaligning (T0547)K310 (1s7zA)D25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQ 1s7zA 19 :KENIRY T0547 312 :D 1s7zA 27 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=67391 # 1bykA.304.138 read from T0547.t04.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)K311 (1bykA)K206 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1bykA)L207 because E (beta_S) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1bykA 199 :LAFCKAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=67392 # 1bu6O.304.60 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)K311 (1bu6O)D68 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1bu6O 61 :VEVLTKA T0547 312 :D 1bu6O 69 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=67394 # 1qu9A.304.57 read from T0547.t04.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)K311 (1qu9A)G65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1qu9A)L66 because E (beta_S) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1qu9A 58 :KAIVEAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=67395 # 1tca.304.87 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)K311 (1tca)G95 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1tca 88 :TALYAGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=67396 # 1kr7A.304.87 read from T0547.t04.many.frag # found chain 1kr7A in training set Warning: unaligning (T0547)K311 (1kr7A)G94 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1kr7A 87 :AKACSAH T0547 312 :D 1kr7A 95 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=67398 # 1v4sA.304.175 read from T0547.t04.many.frag # found chain 1v4sA in template set Warning: unaligning (T0547)K311 (1v4sA)G193 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1v4sA 186 :RDAIKRR T0547 312 :D 1v4sA 194 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=67400 # 1wkcA.304.30 read from T0547.t04.many.frag # found chain 1wkcA in training set Warning: unaligning (T0547)K311 (1wkcA)G38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1wkcA)F39 because P (beta_P) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1wkcA 31 :LPWLRER Number of specific fragments extracted= 1 number of extra gaps= 1 total=67401 # 2c8mA.304.110 read from T0547.t04.many.frag # found chain 2c8mA in template set Warning: unaligning (T0547)K311 (2c8mA)G118 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 2c8mA 111 :VNSLRIL T0547 312 :D 2c8mA 119 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=67403 # 1vqvA.304.104 read from T0547.t04.many.frag # found chain 1vqvA in template set T0547 304 :KNIAEQKKD 1vqvA 105 :KRACEFYKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=67404 1vr4A expands to /projects/compbio/data/pdb/1vr4.pdb.gz 1vr4A:# 1vr4A.304.65 read from T0547.t04.many.frag # adding 1vr4A to template set # found chain 1vr4A in template set Warning: unaligning (T0547)K311 (1vr4A)G73 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1vr4A 66 :KELAKQK T0547 312 :D 1vr4A 74 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=67406 # 1ryp2.304.100 read from T0547.t04.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0547)K310 (1ryp2)M99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1ryp2)N100 because D (zeta) conformation "forbidden" or filtered. T0547 304 :KNIAEQ 1ryp2 93 :YQRRSK T0547 312 :D 1ryp2 101 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=67408 # 1zbsA.304.252 read from T0547.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)K311 (1zbsA)G260 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1zbsA 253 :SSVIKKR T0547 312 :D 1zbsA 261 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=67410 # 2f6hX.304.269 read from T0547.t04.many.frag # found chain 2f6hX in template set Warning: unaligning (T0547)K311 (2f6hX)G298 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 2f6hX 291 :EEWCKTH T0547 312 :D 2f6hX 299 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=67412 # 1nv8A.304.231 read from T0547.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)K310 (1nv8A)Y236 because E (beta_S) conformation "forbidden" or filtered. T0547 304 :KNIAEQ 1nv8A 230 :REFFGR T0547 311 :KD 1nv8A 237 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=67414 # 1nuuA.304.223 read from T0547.t04.many.frag # found chain 1nuuA in template set T0547 304 :KNIAEQKKD 1nuuA 224 :ITYIKDHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67415 # 1e19A.305.98 read from T0547.t04.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)K311 (1e19A)G105 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1e19A 99 :NELRKR T0547 312 :DL 1e19A 106 :ME Number of specific fragments extracted= 2 number of extra gaps= 1 total=67417 # 1ylxA.305.21 read from T0547.t04.many.frag # found chain 1ylxA in training set Warning: unaligning (T0547)K311 (1ylxA)G25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1ylxA)L26 because P (beta_P) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1ylxA 19 :PMMEAY T0547 313 :L 1ylxA 27 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=67419 # 1gwyA.305.18 read from T0547.t04.many.frag # found chain 1gwyA in training set T0547 305 :NIAEQKKDL 1gwyA 19 :KVLEELGKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67420 # 1tca.305.88 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQKK 1tca 89 :ALYAGSG T0547 313 :L 1tca 97 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=67422 # 1kr7A.305.88 read from T0547.t04.many.frag # found chain 1kr7A in training set Warning: unaligning (T0547)K311 (1kr7A)G94 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1kr7A)A95 because P (beta_P) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1kr7A 88 :KACSAH T0547 313 :L 1kr7A 96 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=67424 # 1w66A.305.116 read from T0547.t04.many.frag # found chain 1w66A in training set T0547 305 :NIAEQKKDL 1w66A 115 :QVCADLGLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=67425 # 2bjvA.305.195 read from T0547.t04.many.frag # found chain 2bjvA in training set T0547 305 :NIAEQKKDL 2bjvA 196 :QMCREIKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=67426 # 1nnhA.305.26 read from T0547.t04.many.frag # found chain 1nnhA in training set Warning: unaligning (T0547)K311 (1nnhA)G33 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1nnhA)F34 because P (beta_P) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1nnhA 27 :DFFVKE T0547 313 :L 1nnhA 35 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=67428 # 1fp2A.305.325 read from T0547.t04.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)D312 (1fp2A)F333 because P (beta_P) conformation "forbidden" or filtered. T0547 305 :NIAEQKK 1fp2A 326 :KLFIEAG T0547 313 :L 1fp2A 334 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=67430 # 1fjgT.305.89 read from T0547.t04.many.frag # found chain 1fjgT in template set Warning: unaligning (T0547)K311 (1fjgT)G96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1fjgT)A97 because E (beta_S) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1fjgT 90 :QLLEAA T0547 313 :L 1fjgT 98 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=67432 # 1xkpB.305.9 read from T0547.t04.many.frag # found chain 1xkpB in training set Warning: unaligning (T0547)K310 (1xkpB)L15 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1xkpB)G16 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQ 1xkpB 10 :HFCQD T0547 312 :DL 1xkpB 17 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=67434 # 1cxqA.305.121 read from T0547.t04.many.frag # found chain 1cxqA in training set Warning: unaligning (T0547)K311 (1cxqA)G175 because T (delta_L) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1cxqA 169 :VLAEGD T0547 312 :DL 1cxqA 176 :FM Number of specific fragments extracted= 2 number of extra gaps= 1 total=67436 # 1zbsA.305.253 read from T0547.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)K311 (1zbsA)G260 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1zbsA)L261 because P (beta_P) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1zbsA 254 :SVIKKR T0547 313 :L 1zbsA 262 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=67438 # 1qd1A.305.112 read from T0547.t04.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)K311 (1qd1A)G120 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1qd1A 114 :RLAEEL T0547 312 :DL 1qd1A 121 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=67440 # 1wv8A.305.46 read from T0547.t04.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)L313 (1wv8A)A55 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQKKD 1wv8A 47 :ELLEENGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=67441 # 1qgiA.305.97 read from T0547.t04.many.frag # found chain 1qgiA in training set Warning: unaligning (T0547)K311 (1qgiA)G104 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1qgiA)I105 because P (beta_P) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1qgiA 98 :GALKRL T0547 313 :L 1qgiA 106 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=67443 # 1i88A.305.284 read from T0547.t04.many.frag # found chain 1i88A in training set T0547 305 :NIAEQKKDL 1i88A 285 :EAFEPLGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=67444 # 1ne9A.305.200 read from T0547.t04.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)K311 (1ne9A)G207 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1ne9A 201 :TMAERH T0547 312 :DL 1ne9A 208 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=67446 # 1qu9A.305.58 read from T0547.t04.many.frag # found chain 1qu9A in training set T0547 305 :NIAEQKKDL 1qu9A 59 :AIVEAAGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67447 # 1qhtA.305.220 read from T0547.t04.many.frag # found chain 1qhtA in template set Warning: unaligning (T0547)K311 (1qhtA)G227 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1qhtA 221 :KRCEEL T0547 312 :DL 1qhtA 228 :IK Number of specific fragments extracted= 2 number of extra gaps= 1 total=67449 # 1uddA.305.88 read from T0547.t04.many.frag # found chain 1uddA in template set Warning: unaligning (T0547)K311 (1uddA)D95 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1uddA 89 :KLLKEL T0547 312 :DL 1uddA 96 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=67451 1iapA expands to /projects/compbio/data/pdb/1iap.pdb.gz 1iapA:# 1iapA.305.182 read from T0547.t04.many.frag # adding 1iapA to template set # found chain 1iapA in template set T0547 305 :NIAEQKKDL 1iapA 224 :LYMRHLGVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=67452 # 1iirA.305.171 read from T0547.t04.many.frag # found chain 1iirA in training set T0547 305 :NIAEQKKDL 1iirA 172 :SHRDAIGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=67453 # 2a2lA.305.25 read from T0547.t04.many.frag # found chain 2a2lA in template set Warning: unaligning (T0547)K311 (2a2lA)N33 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 2a2lA 27 :KKATEI T0547 312 :DL 2a2lA 34 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=67455 # 2c8mA.305.111 read from T0547.t04.many.frag # found chain 2c8mA in template set T0547 305 :NIAEQKKDL 2c8mA 112 :NSLRILGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67456 # 1nv8A.305.232 read from T0547.t04.many.frag # found chain 1nv8A in template set T0547 305 :NIAEQKKDL 1nv8A 231 :EFFGRYDTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=67457 # 1n3lA.305.196 read from T0547.t04.many.frag # found chain 1n3lA in training set T0547 305 :NIAEQKKDL 1n3lA 197 :KYLPALGYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=67458 # 1aocA.305.35 read from T0547.t04.many.frag # found chain 1aocA in template set Warning: unaligning (T0547)L313 (1aocA)S44 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQKKD 1aocA 36 :AVAQESGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=67459 # 1v4sA.305.176 read from T0547.t04.many.frag # found chain 1v4sA in template set Warning: unaligning (T0547)K311 (1v4sA)G193 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L313 (1v4sA)F195 because Y (epsilon') conformation "forbidden" or filtered. T0547 305 :NIAEQK 1v4sA 187 :DAIKRR T0547 312 :D 1v4sA 194 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=67461 # 1omhA.305.201 read from T0547.t04.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)K311 (1omhA)G208 because T (delta_L) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1omhA 202 :HELQKL T0547 312 :DL 1omhA 209 :YQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=67463 # 1fp2A.306.326 read from T0547.t04.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)D312 (1fp2A)F333 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1fp2A)H335 because Y (epsilon') conformation "forbidden" or filtered. T0547 306 :IAEQKK 1fp2A 327 :LFIEAG T0547 313 :L 1fp2A 334 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=67465 # 1zbsA.306.254 read from T0547.t04.many.frag # found chain 1zbsA in template set T0547 306 :IAEQKKDLE 1zbsA 255 :VIKKRGLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67466 # 1ylxA.306.22 read from T0547.t04.many.frag # found chain 1ylxA in training set T0547 306 :IAEQKKDLE 1ylxA 20 :MMEAYGLDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=67467 # 1kr7A.306.89 read from T0547.t04.many.frag # found chain 1kr7A in training set Warning: unaligning (T0547)K311 (1kr7A)G94 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQK 1kr7A 89 :ACSAH T0547 312 :DLE 1kr7A 95 :APD Number of specific fragments extracted= 2 number of extra gaps= 1 total=67469 # 1ukkA.306.64 read from T0547.t04.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)K310 (1ukkA)E69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1ukkA)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 306 :IAEQ 1ukkA 65 :SLER T0547 312 :DLE 1ukkA 71 :FPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=67471 # 1tca.306.89 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQKK 1tca 90 :LYAGSG T0547 313 :LE 1tca 97 :NK Number of specific fragments extracted= 2 number of extra gaps= 1 total=67473 # 1evlA.306.202 read from T0547.t04.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)D312 (1evlA)I450 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1evlA)F452 because Y (epsilon') conformation "forbidden" or filtered. T0547 306 :IAEQKK 1evlA 444 :ALEENN T0547 313 :L 1evlA 451 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=67475 # 2b61A.306.145 read from T0547.t04.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)K310 (2b61A)L131 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (2b61A)G132 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQ 2b61A 127 :LLEH T0547 312 :DLE 2b61A 133 :ISH Number of specific fragments extracted= 2 number of extra gaps= 1 total=67477 # 2bjvA.306.196 read from T0547.t04.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)D312 (2bjvA)L203 because P (beta_P) conformation "forbidden" or filtered. T0547 306 :IAEQKK 2bjvA 197 :MCREIK T0547 313 :LE 2bjvA 204 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=67479 # 1gwyA.306.19 read from T0547.t04.many.frag # found chain 1gwyA in training set Warning: unaligning (T0547)K311 (1gwyA)G25 because S (epsilon) conformation "forbidden" or filtered. T0547 306 :IAEQK 1gwyA 20 :VLEEL T0547 312 :DLE 1gwyA 26 :KVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=67481 # 1iirA.306.172 read from T0547.t04.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)K311 (1iirA)G178 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1iirA)L179 because E (beta_S) conformation "forbidden" or filtered. T0547 306 :IAEQK 1iirA 173 :HRDAI T0547 313 :LE 1iirA 180 :PP Number of specific fragments extracted= 2 number of extra gaps= 1 total=67483 # 1e19A.306.99 read from T0547.t04.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)K311 (1e19A)G105 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1e19A)M106 because E (beta_S) conformation "forbidden" or filtered. T0547 306 :IAEQK 1e19A 100 :ELRKR T0547 313 :LE 1e19A 107 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=67485 # 1nnhA.306.27 read from T0547.t04.many.frag # found chain 1nnhA in training set Warning: unaligning (T0547)K311 (1nnhA)G33 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1nnhA)W36 because N (gamma') conformation "forbidden" or filtered. T0547 306 :IAEQK 1nnhA 28 :FFVKE T0547 312 :DL 1nnhA 34 :FK Number of specific fragments extracted= 2 number of extra gaps= 2 total=67487 # 2bfwA.306.26 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)K311 (2bfwA)G245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2bfwA)E248 because P (beta_P) conformation "forbidden" or filtered. T0547 306 :IAEQK 2bfwA 240 :LLSKF T0547 312 :DL 2bfwA 246 :MD Number of specific fragments extracted= 2 number of extra gaps= 2 total=67489 # 1fjgT.306.90 read from T0547.t04.many.frag # found chain 1fjgT in template set Warning: unaligning (T0547)D312 (1fjgT)A97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1fjgT)L99 because N (gamma') conformation "forbidden" or filtered. T0547 306 :IAEQKK 1fjgT 91 :LLEAAG T0547 313 :L 1fjgT 98 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=67491 # 1ne9A.306.201 read from T0547.t04.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)K311 (1ne9A)G207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1ne9A)I208 because E (beta_S) conformation "forbidden" or filtered. T0547 306 :IAEQK 1ne9A 202 :MAERH T0547 313 :LE 1ne9A 209 :TH Number of specific fragments extracted= 2 number of extra gaps= 1 total=67493 # 1v7zA.306.136 read from T0547.t04.many.frag # found chain 1v7zA in training set T0547 306 :IAEQKKDLE 1v7zA 137 :ELRYAGIQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=67494 # 1iapA.306.183 read from T0547.t04.many.frag # found chain 1iapA in template set Warning: unaligning (T0547)K311 (1iapA)G230 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 because last residue in template chain is (1iapA)T233 T0547 306 :IAEQK 1iapA 225 :YMRHL T0547 312 :DL 1iapA 231 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=67496 # 1y8aA.306.214 read from T0547.t04.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1y8aA)F201 because D (zeta) conformation "forbidden" or filtered. T0547 306 :IAEQK 1y8aA 193 :YCESK T0547 312 :DL 1y8aA 199 :ID Number of specific fragments extracted= 2 number of extra gaps= 2 total=67498 # 1qhtA.306.221 read from T0547.t04.many.frag # found chain 1qhtA in template set T0547 306 :IAEQKKDLE 1qhtA 222 :RCEELGIKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=67499 # 1xkpB.306.10 read from T0547.t04.many.frag # found chain 1xkpB in training set Warning: unaligning (T0547)K311 (1xkpB)G16 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1xkpB)V17 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1xkpB)T19 because E (beta_S) conformation "forbidden" or filtered. T0547 306 :IAEQK 1xkpB 11 :FCQDL T0547 313 :L 1xkpB 18 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=67501 # 1w66A.306.117 read from T0547.t04.many.frag # found chain 1w66A in training set Warning: unaligning (T0547)K311 (1w66A)G121 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1w66A)L122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1w66A)A124 because E (beta_S) conformation "forbidden" or filtered. T0547 306 :IAEQK 1w66A 116 :VCADL T0547 313 :L 1w66A 123 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=67503 # 2a2lA.306.26 read from T0547.t04.many.frag # found chain 2a2lA in template set Warning: unaligning (T0547)K311 (2a2lA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (2a2lA)V37 T0547 306 :IAEQK 2a2lA 28 :KATEI T0547 312 :DL 2a2lA 34 :VA Number of specific fragments extracted= 2 number of extra gaps= 2 total=67505 # 1qgiA.306.98 read from T0547.t04.many.frag # found chain 1qgiA in training set Warning: unaligning (T0547)K311 (1qgiA)G104 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQK 1qgiA 99 :ALKRL T0547 312 :DLE 1qgiA 105 :ING Number of specific fragments extracted= 2 number of extra gaps= 1 total=67507 # 1eswA.306.351 read from T0547.t04.many.frag # found chain 1eswA in template set Warning: unaligning (T0547)K311 (1eswA)G357 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1eswA)L358 because P (beta_P) conformation "forbidden" or filtered. T0547 306 :IAEQK 1eswA 352 :LRDRF T0547 313 :LE 1eswA 359 :PG Number of specific fragments extracted= 2 number of extra gaps= 1 total=67509 # 1di2A.306.8 read from T0547.t04.many.frag # found chain 1di2A in template set Warning: unaligning (T0547)K311 (1di2A)G125 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1di2A)L128 because P (beta_P) conformation "forbidden" or filtered. T0547 306 :IAEQK 1di2A 120 :LAVQK T0547 312 :DL 1di2A 126 :WR Number of specific fragments extracted= 2 number of extra gaps= 2 total=67511 # 1i88A.306.285 read from T0547.t04.many.frag # found chain 1i88A in training set Warning: unaligning (T0547)K310 (1i88A)L290 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1i88A)G291 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1i88A)I292 because E (beta_S) conformation "forbidden" or filtered. T0547 306 :IAEQ 1i88A 286 :AFEP T0547 313 :LE 1i88A 293 :SD Number of specific fragments extracted= 2 number of extra gaps= 1 total=67513 # 1n3lA.306.197 read from T0547.t04.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)D312 (1n3lA)Y204 because E (beta_S) conformation "forbidden" or filtered. T0547 306 :IAEQKK 1n3lA 198 :YLPALG T0547 313 :LE 1n3lA 205 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=67515 # 1reqB.306.628 read from T0547.t04.many.frag # found chain 1reqB in template set Warning: unaligning (T0547)K311 (1reqB)G635 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L313 because of BadResidue code HAS_OXT+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1reqB)K638 Warning: unaligning (T0547)E314 because of BadResidue code HAS_OXT+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1reqB)K638 T0547 306 :IAEQK 1reqB 630 :TLDIL T0547 312 :D 1reqB 636 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=67517 # 1bykA.306.140 read from T0547.t04.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)E314 (1bykA)P209 because P (beta_P) conformation "forbidden" or filtered. T0547 306 :IAEQKKDL 1bykA 201 :FCKAHKLH Number of specific fragments extracted= 1 number of extra gaps= 1 total=67518 # 1fp2A.307.327 read from T0547.t04.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)P315 (1fp2A)Y336 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKKDLE 1fp2A 328 :FIEAGFQH Number of specific fragments extracted= 1 number of extra gaps= 1 total=67519 # 1tca.307.90 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKK 1tca 91 :YAGSG T0547 313 :LE 1tca 97 :NK Number of specific fragments extracted= 2 number of extra gaps= 2 total=67521 # 1di2A.307.9 read from T0547.t04.many.frag # found chain 1di2A in template set T0547 307 :AEQKKDLEP 1di2A 121 :AVQKGWRLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=67522 # 1y8aA.307.215 read from T0547.t04.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. T0547 307 :AEQK 1y8aA 194 :CESK T0547 312 :DLEP 1y8aA 199 :IDFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=67524 # 2bfwA.307.27 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)K311 (2bfwA)G245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2bfwA)G249 because Y (epsilon') conformation "forbidden" or filtered. T0547 307 :AEQK 2bfwA 241 :LSKF T0547 312 :DLE 2bfwA 246 :MDE Number of specific fragments extracted= 2 number of extra gaps= 2 total=67526 # 1iirA.307.173 read from T0547.t04.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)K311 (1iirA)G178 because L (left) conformation "forbidden" or filtered. T0547 307 :AEQK 1iirA 174 :RDAI T0547 312 :DLEP 1iirA 179 :LPPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=67528 # 2b61A.307.146 read from T0547.t04.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)K311 (2b61A)G132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2b61A)H135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2b61A)L136 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 2b61A 128 :LEHL T0547 312 :DL 2b61A 133 :IS Number of specific fragments extracted= 2 number of extra gaps= 2 total=67530 # 1zbsA.307.255 read from T0547.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)K310 (1zbsA)R259 because G (3-10) conformation "forbidden" or filtered. T0547 307 :AEQ 1zbsA 256 :IKK T0547 311 :KDLEP 1zbsA 260 :GLTLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=67532 # 1v7zA.307.137 read from T0547.t04.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)K311 (1v7zA)G142 because L (left) conformation "forbidden" or filtered. T0547 307 :AEQK 1v7zA 138 :LRYA T0547 312 :DLEP 1v7zA 143 :IQDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=67534 # 1kr7A.307.90 read from T0547.t04.many.frag # found chain 1kr7A in training set Warning: unaligning (T0547)K311 (1kr7A)G94 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1kr7A)L98 because G (3-10) conformation "forbidden" or filtered. T0547 307 :AEQK 1kr7A 90 :CSAH T0547 312 :DLE 1kr7A 95 :APD Number of specific fragments extracted= 2 number of extra gaps= 2 total=67536 # 1ylxA.307.23 read from T0547.t04.many.frag # found chain 1ylxA in training set Warning: unaligning (T0547)K311 (1ylxA)G25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1ylxA)L26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1ylxA)V29 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 1ylxA 21 :MEAY T0547 313 :LE 1ylxA 27 :DQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=67538 # 1ukkA.307.65 read from T0547.t04.many.frag # found chain 1ukkA in training set T0547 307 :AEQKKDLEP 1ukkA 66 :LEREGFPPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67539 # 1gwyA.307.20 read from T0547.t04.many.frag # found chain 1gwyA in training set Warning: unaligning (T0547)P315 (1gwyA)R29 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKKDLE 1gwyA 21 :LEELGKVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=67540 # 1fi4A.307.308 read from T0547.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0547)K311 (1fi4A)G293 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1fi4A)V297 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 1fi4A 289 :NQFY T0547 312 :DLE 1fi4A 294 :ETI Number of specific fragments extracted= 2 number of extra gaps= 2 total=67542 2tpt expands to /projects/compbio/data/pdb/2tpt.pdb.gz 2tpt:Warning: there is no chain 2tpt will retry with 2tptA # 2tpt.307.227 read from T0547.t04.many.frag # adding 2tpt to template set # found chain 2tpt in template set Warning: unaligning (T0547)P315 (2tpt)T236 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKKDLE 2tpt 228 :ANGAGVRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=67543 # 1evlA.307.203 read from T0547.t04.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)E314 (1evlA)F452 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1evlA)E453 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKKDL 1evlA 445 :LEENNIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=67544 # 1nnhA.307.28 read from T0547.t04.many.frag # found chain 1nnhA in training set Warning: unaligning (T0547)K310 (1nnhA)E32 because G (3-10) conformation "forbidden" or filtered. T0547 307 :AEQ 1nnhA 29 :FVK T0547 311 :KDLEP 1nnhA 33 :GFKWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=67546 # 1v33A.307.152 read from T0547.t04.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)E314 (1v33A)D140 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1v33A)I141 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKKDL 1v33A 133 :REELGFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=67547 # 1ne9A.307.202 read from T0547.t04.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)K311 (1ne9A)G207 because L (left) conformation "forbidden" or filtered. T0547 307 :AEQK 1ne9A 203 :AERH T0547 312 :DLEP 1ne9A 208 :ITHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=67549 # 1ug6A.307.205 read from T0547.t04.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)E314 (1ug6A)R213 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1ug6A)V214 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKKDL 1ug6A 206 :LRAAGAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=67550 # 1smbA.307.20 read from T0547.t04.many.frag # found chain 1smbA in training set Warning: unaligning (T0547)E314 (1smbA)P28 because P (beta_P) conformation "forbidden" or filtered. T0547 307 :AEQKKDL 1smbA 21 :RQKHGVP T0547 315 :P 1smbA 29 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=67552 # 1eswA.307.352 read from T0547.t04.many.frag # found chain 1eswA in template set Warning: unaligning (T0547)K311 (1eswA)G357 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1eswA)G360 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1eswA)M361 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 1eswA 353 :RDRF T0547 312 :DL 1eswA 358 :LP Number of specific fragments extracted= 2 number of extra gaps= 2 total=67554 # 1qu9A.307.94 read from T0547.t04.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)K311 (1qu9A)N99 because L (left) conformation "forbidden" or filtered. T0547 307 :AEQK 1qu9A 95 :FTEH T0547 312 :DLEP 1qu9A 100 :ATFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=67556 # 1k8qA.307.138 read from T0547.t04.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)E314 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. T0547 307 :AEQKKDL 1k8qA 139 :LKKTGQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=67557 # 1fiqB.307.48 read from T0547.t04.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K311 (1fiqB)N272 because L (left) conformation "forbidden" or filtered. T0547 307 :AEQK 1fiqB 268 :MKFK T0547 312 :DLEP 1fiqB 273 :QLFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=67559 # 1dpgA.307.102 read from T0547.t04.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)K311 (1dpgA)D107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1dpgA)G110 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1dpgA)N111 because L (left) conformation "forbidden" or filtered. T0547 307 :AEQK 1dpgA 103 :ADKF T0547 312 :DL 1dpgA 108 :ID Number of specific fragments extracted= 2 number of extra gaps= 2 total=67561 # 1qhtA.307.222 read from T0547.t04.many.frag # found chain 1qhtA in template set Warning: unaligning (T0547)K311 (1qhtA)G227 because L (left) conformation "forbidden" or filtered. T0547 307 :AEQK 1qhtA 223 :CEEL T0547 312 :DLEP 1qhtA 228 :IKFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=67563 # 2bjvA.307.197 read from T0547.t04.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)K311 (2bjvA)K202 because L (left) conformation "forbidden" or filtered. T0547 307 :AEQK 2bjvA 198 :CREI T0547 312 :DLEP 2bjvA 203 :LPLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=67565 # 1ijyA.307.96 read from T0547.t04.many.frag # found chain 1ijyA in training set T0547 307 :AEQKKDLEP 1ijyA 95 :MRQYGFAWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=67566 # 1fjgT.307.91 read from T0547.t04.many.frag # found chain 1fjgT in template set Warning: unaligning (T0547)K311 (1fjgT)G96 because L (left) conformation "forbidden" or filtered. T0547 307 :AEQK 1fjgT 92 :LEAA T0547 312 :DLEP 1fjgT 97 :APLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=67568 # 1tca.308.91 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1tca)K98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKK 1tca 92 :AGSG T0547 313 :L 1tca 97 :N T0547 316 :D 1tca 100 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=67571 # 2b61A.308.147 read from T0547.t04.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)D312 (2b61A)I133 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2b61A)H135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2b61A)L136 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKK 2b61A 129 :EHLG T0547 313 :L 2b61A 134 :S T0547 316 :D 2b61A 137 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=67574 # 1v7zA.308.138 read from T0547.t04.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)K311 (1v7zA)G142 because L (left) conformation "forbidden" or filtered. T0547 308 :EQK 1v7zA 139 :RYA T0547 312 :DLEPD 1v7zA 143 :IQDFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=67576 # 2bfwA.308.28 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)K311 (2bfwA)G245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2bfwA)G249 because Y (epsilon') conformation "forbidden" or filtered. T0547 308 :EQK 2bfwA 242 :SKF T0547 312 :DLE 2bfwA 246 :MDE T0547 316 :D 2bfwA 250 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=67579 # 1y8aA.308.216 read from T0547.t04.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. T0547 308 :EQK 1y8aA 195 :ESK T0547 312 :DLEPD 1y8aA 199 :IDFPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=67581 # 1fp2A.308.328 read from T0547.t04.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)E314 (1fp2A)H335 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1fp2A)Y336 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDL 1fp2A 329 :IEAGFQ T0547 316 :D 1fp2A 337 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=67583 # 1di2A.308.10 read from T0547.t04.many.frag # found chain 1di2A in template set Warning: unaligning (T0547)D312 (1di2A)W126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1di2A)E130 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKK 1di2A 122 :VQKG T0547 313 :LEP 1di2A 127 :RLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=67585 # 2tpt.308.228 read from T0547.t04.many.frag # found chain 2tpt in template set Warning: unaligning (T0547)P315 (2tpt)T236 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (2tpt)A237 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 2tpt 229 :NGAGVRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=67586 # 1zbsA.308.256 read from T0547.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)D312 (1zbsA)L261 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1zbsA)S265 because Y (epsilon') conformation "forbidden" or filtered. T0547 308 :EQKK 1zbsA 257 :KKRG T0547 313 :LEP 1zbsA 262 :TLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=67588 # 1v33A.308.153 read from T0547.t04.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)K311 (1v33A)G137 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1v33A)D140 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1v33A)I141 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQK 1v33A 134 :EEL T0547 312 :DL 1v33A 138 :FN T0547 316 :D 1v33A 142 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=67591 # 1k8qA.308.139 read from T0547.t04.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)K311 (1k8qA)G143 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. T0547 308 :EQK 1k8qA 140 :KKT T0547 312 :DL 1k8qA 144 :QD T0547 316 :D 1k8qA 148 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=67594 # 1ylxA.308.24 read from T0547.t04.many.frag # found chain 1ylxA in training set Warning: unaligning (T0547)P315 (1ylxA)V29 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 1ylxA 22 :EAYGLDQ T0547 316 :D 1ylxA 30 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=67596 # 1iirA.308.174 read from T0547.t04.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)K310 (1iirA)I177 because G (3-10) conformation "forbidden" or filtered. T0547 308 :EQ 1iirA 175 :DA T0547 311 :KDLEPD 1iirA 178 :GLPPVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=67598 # 1fi4A.308.309 read from T0547.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0547)K311 (1fi4A)G293 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1fi4A)V297 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQK 1fi4A 290 :QFY T0547 312 :DLE 1fi4A 294 :ETI T0547 316 :D 1fi4A 298 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=67601 # 1ug6A.308.206 read from T0547.t04.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)P315 (1ug6A)V214 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 1ug6A 207 :RAAGARR T0547 316 :D 1ug6A 215 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=67603 # 1n3lA.308.199 read from T0547.t04.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)D312 (1n3lA)Y204 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE in next template residue (1n3lA)V208 Warning: unaligning (T0547)D316 because of BadResidue code BAD_PEPTIDE at template residue (1n3lA)V208 T0547 308 :EQKK 1n3lA 200 :PALG T0547 313 :LE 1n3lA 205 :SK Number of specific fragments extracted= 2 number of extra gaps= 2 total=67605 # 1q0rA.308.88 read from T0547.t04.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)D312 (1q0rA)V93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1q0rA)A96 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKK 1q0rA 89 :DGWG T0547 313 :LE 1q0rA 94 :DR T0547 316 :D 1q0rA 97 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=67608 # 1eswA.308.353 read from T0547.t04.many.frag # found chain 1eswA in template set Warning: unaligning (T0547)P315 (1eswA)M361 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 1eswA 354 :DRFGLPG T0547 316 :D 1eswA 362 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=67610 # 1gwyA.308.21 read from T0547.t04.many.frag # found chain 1gwyA in training set Warning: unaligning (T0547)D312 (1gwyA)K26 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1gwyA)R29 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKK 1gwyA 22 :EELG T0547 313 :LE 1gwyA 27 :VS T0547 316 :D 1gwyA 30 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=67613 # 1ukkA.308.66 read from T0547.t04.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)E314 (1ukkA)P73 because P (beta_P) conformation "forbidden" or filtered. T0547 308 :EQKKDL 1ukkA 67 :EREGFP T0547 315 :PD 1ukkA 74 :KR Number of specific fragments extracted= 2 number of extra gaps= 1 total=67615 # 1kr7A.308.91 read from T0547.t04.many.frag # found chain 1kr7A in training set Warning: unaligning (T0547)K311 (1kr7A)G94 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1kr7A)L98 because G (3-10) conformation "forbidden" or filtered. T0547 308 :EQK 1kr7A 91 :SAH T0547 312 :DLE 1kr7A 95 :APD T0547 316 :D 1kr7A 99 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=67618 # 2d1pB.308.68 read from T0547.t04.many.frag # found chain 2d1pB in template set Warning: unaligning (T0547)P315 (2d1pB)C76 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 2d1pB 69 :GLYDIEQ T0547 316 :D 2d1pB 77 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=67620 # 1fiqB.308.49 read from T0547.t04.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K311 (1fiqB)N272 because L (left) conformation "forbidden" or filtered. T0547 308 :EQK 1fiqB 269 :KFK T0547 312 :DLEPD 1fiqB 273 :QLFPM Number of specific fragments extracted= 2 number of extra gaps= 1 total=67622 # 1gx5A.308.303 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)E314 (1gx5A)D310 because L (left) conformation "forbidden" or filtered. T0547 308 :EQKKDL 1gx5A 304 :RAAKLQ T0547 315 :PD 1gx5A 311 :CT Number of specific fragments extracted= 2 number of extra gaps= 1 total=67624 # 1ejbA.308.113 read from T0547.t04.many.frag # found chain 1ejbA in template set Warning: unaligning (T0547)K311 (1ejbA)D117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1ejbA)M118 because Y (epsilon') conformation "forbidden" or filtered. T0547 308 :EQK 1ejbA 114 :EKV T0547 313 :LEPD 1ejbA 119 :PVIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=67626 # 1dpgA.308.103 read from T0547.t04.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)P315 (1dpgA)N111 because L (left) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 1dpgA 104 :DKFDIDG T0547 316 :D 1dpgA 112 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=67628 # 1smbA.308.21 read from T0547.t04.many.frag # found chain 1smbA in training set T0547 308 :EQKKDLEPD 1smbA 22 :QKHGVPPLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=67629 # 2c5aA.308.191 read from T0547.t04.many.frag # found chain 2c5aA in training set Warning: unaligning (T0547)K311 (2c5aA)G193 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2c5aA)R197 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (2c5aA)I198 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQK 2c5aA 190 :KDF T0547 312 :DLE 2c5aA 194 :IEC Number of specific fragments extracted= 2 number of extra gaps= 2 total=67631 # 1jykA.308.66 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)P315 (1jykA)I54 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1jykA)I55 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 1jykA 47 :KEKGIND Number of specific fragments extracted= 1 number of extra gaps= 1 total=67632 # 1v4sA.308.179 read from T0547.t04.many.frag # found chain 1v4sA in template set Warning: unaligning (T0547)K311 (1v4sA)G193 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1v4sA)M197 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQK 1v4sA 190 :KRR T0547 312 :DLE 1v4sA 194 :DFE T0547 316 :D 1v4sA 198 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=67635 # 1v7zA.309.139 read from T0547.t04.many.frag # found chain 1v7zA in training set T0547 309 :QKKDLEPDI 1v7zA 140 :YAGIQDFKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=67636 # 1y8aA.309.217 read from T0547.t04.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. T0547 309 :QK 1y8aA 196 :SK T0547 312 :DLEPDI 1y8aA 199 :IDFPVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=67638 # 1tca.309.92 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)K310 (1tca)S94 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1tca)G95 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :Q 1tca 93 :G T0547 313 :LE 1tca 97 :NK T0547 316 :DI 1tca 100 :PV Number of specific fragments extracted= 3 number of extra gaps= 2 total=67641 # 2b61A.309.148 read from T0547.t04.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)K311 (2b61A)G132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2b61A)H135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2b61A)L136 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 2b61A 130 :HL T0547 312 :DL 2b61A 133 :IS T0547 316 :DI 2b61A 137 :KA Number of specific fragments extracted= 3 number of extra gaps= 2 total=67644 # 2bfwA.309.29 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)K311 (2bfwA)G245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2bfwA)G249 because Y (epsilon') conformation "forbidden" or filtered. T0547 309 :QK 2bfwA 243 :KF T0547 312 :DLE 2bfwA 246 :MDE T0547 316 :DI 2bfwA 250 :VT Number of specific fragments extracted= 3 number of extra gaps= 2 total=67647 # 1q0rA.309.89 read from T0547.t04.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)K311 (1q0rA)G92 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1q0rA)A96 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1q0rA 90 :GW T0547 312 :DLE 1q0rA 93 :VDR T0547 316 :DI 1q0rA 97 :HV Number of specific fragments extracted= 3 number of extra gaps= 2 total=67650 # 2tpt.309.229 read from T0547.t04.many.frag # found chain 2tpt in template set Warning: unaligning (T0547)K311 (2tpt)G232 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (2tpt)V233 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2tpt)T236 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (2tpt)A237 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 2tpt 230 :GA T0547 313 :LE 2tpt 234 :RT T0547 317 :I 2tpt 238 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=67653 # 1n3lA.309.200 read from T0547.t04.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE in next template residue (1n3lA)V208 Warning: unaligning (T0547)D316 because of BadResidue code BAD_PEPTIDE at template residue (1n3lA)V208 T0547 309 :QKKDLE 1n3lA 201 :ALGYSK T0547 317 :I 1n3lA 209 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=67655 # 1k8qA.309.140 read from T0547.t04.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)K311 (1k8qA)G143 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. T0547 309 :QK 1k8qA 141 :KT T0547 312 :DL 1k8qA 144 :QD T0547 316 :DI 1k8qA 148 :HY Number of specific fragments extracted= 3 number of extra gaps= 2 total=67658 # 1di2A.309.11 read from T0547.t04.many.frag # found chain 1di2A in template set Warning: unaligning (T0547)K311 (1di2A)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 309 :QK 1di2A 123 :QK T0547 312 :DLEPDI 1di2A 126 :WRLPEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=67660 # 1ug6A.309.207 read from T0547.t04.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)K311 (1ug6A)G210 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1ug6A)V214 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1ug6A)G215 because Y (epsilon') conformation "forbidden" or filtered. T0547 309 :QK 1ug6A 208 :AA T0547 312 :DLE 1ug6A 211 :ARR T0547 317 :I 1ug6A 216 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=67663 # 1v33A.309.154 read from T0547.t04.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)K310 (1v33A)L136 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1v33A)G137 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1v33A)I141 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :Q 1v33A 135 :E T0547 312 :DLE 1v33A 138 :FND T0547 316 :DI 1v33A 142 :HI Number of specific fragments extracted= 3 number of extra gaps= 2 total=67666 # 1fp2A.309.329 read from T0547.t04.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)K311 (1fp2A)G332 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1fp2A)H335 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1fp2A)Y336 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1fp2A 330 :EA T0547 312 :DL 1fp2A 333 :FQ T0547 316 :DI 1fp2A 337 :KI Number of specific fragments extracted= 3 number of extra gaps= 2 total=67669 # 1ylxA.309.25 read from T0547.t04.many.frag # found chain 1ylxA in training set Warning: unaligning (T0547)D312 (1ylxA)L26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1ylxA)V29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1ylxA)G30 because Y (epsilon') conformation "forbidden" or filtered. T0547 309 :QKK 1ylxA 23 :AYG T0547 313 :LE 1ylxA 27 :DQ T0547 317 :I 1ylxA 31 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=67672 # 1fi4A.309.310 read from T0547.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0547)P315 (1fi4A)V297 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1fi4A)A298 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKKDLE 1fi4A 291 :FYGETI T0547 317 :I 1fi4A 299 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=67674 # 2d1pB.309.69 read from T0547.t04.many.frag # found chain 2d1pB in template set Warning: unaligning (T0547)K311 (2d1pB)D72 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2d1pB)C76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (2d1pB)W77 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 2d1pB 70 :LY T0547 312 :DLE 2d1pB 73 :IEQ T0547 317 :I 2d1pB 78 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=67677 # 1r44A.309.55 read from T0547.t04.many.frag # found chain 1r44A in template set Warning: unaligning (T0547)Q309 because of BadResidue code BAD_PEPTIDE in next template residue (1r44A)A57 Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE at template residue (1r44A)A57 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE at template residue (1r44A)A58 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE at template residue (1r44A)T59 Warning: unaligning (T0547)L313 (1r44A)Q60 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1r44A)Y62 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1r44A 61 :G T0547 316 :DI 1r44A 63 :GL Number of specific fragments extracted= 2 number of extra gaps= 2 total=67679 # 1zbsA.309.257 read from T0547.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)K310 (1zbsA)R259 because G (3-10) conformation "forbidden" or filtered. T0547 309 :Q 1zbsA 258 :K T0547 311 :KDLEPDI 1zbsA 260 :GLTLGSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=67681 # 1h7sA.309.47 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)K311 (1h7sA)G50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1h7sA)I54 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1h7sA 48 :DA T0547 312 :DLE 1h7sA 51 :ATN T0547 316 :DI 1h7sA 55 :DL Number of specific fragments extracted= 3 number of extra gaps= 2 total=67684 # 1fiqB.309.50 read from T0547.t04.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)D312 (1fiqB)Q273 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1fiqB)F275 because D (zeta) conformation "forbidden" or filtered. T0547 309 :QKK 1fiqB 270 :FKN T0547 313 :L 1fiqB 274 :L T0547 315 :PDI 1fiqB 276 :PMI Number of specific fragments extracted= 3 number of extra gaps= 2 total=67687 # 1g5hA.309.156 read from T0547.t04.many.frag # found chain 1g5hA in template set Warning: unaligning (T0547)K310 (1g5hA)V174 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1g5hA)R176 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1g5hA)L178 because P (beta_P) conformation "forbidden" or filtered. T0547 309 :Q 1g5hA 173 :L T0547 311 :K 1g5hA 175 :N T0547 313 :L 1g5hA 177 :K T0547 315 :PDI 1g5hA 179 :PFG Number of specific fragments extracted= 4 number of extra gaps= 3 total=67691 # 1ysrA.309.60 read from T0547.t04.many.frag # found chain 1ysrA in training set Warning: unaligning (T0547)K311 (1ysrA)G359 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1ysrA)A360 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1ysrA)V363 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1ysrA 357 :HG T0547 313 :LE 1ysrA 361 :TL T0547 316 :DI 1ysrA 364 :QL Number of specific fragments extracted= 3 number of extra gaps= 2 total=67694 # 1dpgA.309.104 read from T0547.t04.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)P315 (1dpgA)N111 because L (left) conformation "forbidden" or filtered. T0547 309 :QKKDLE 1dpgA 105 :KFDIDG T0547 316 :DI 1dpgA 112 :RI Number of specific fragments extracted= 2 number of extra gaps= 1 total=67696 # 1gx5A.309.304 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)K310 (1gx5A)A306 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1gx5A)D310 because L (left) conformation "forbidden" or filtered. T0547 309 :Q 1gx5A 305 :A T0547 311 :KDL 1gx5A 307 :KLQ T0547 315 :PDI 1gx5A 311 :CTM Number of specific fragments extracted= 3 number of extra gaps= 2 total=67699 # 1jykA.309.67 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)K311 (1jykA)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1jykA)I54 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1jykA)I55 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1jykA 48 :EK T0547 312 :DLE 1jykA 51 :IND T0547 317 :I 1jykA 56 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=67702 # 1eswA.309.354 read from T0547.t04.many.frag # found chain 1eswA in template set Warning: unaligning (T0547)K311 (1eswA)G357 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1eswA)M361 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1eswA)K362 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1eswA 355 :RF T0547 312 :DLE 1eswA 358 :LPG T0547 317 :I 1eswA 363 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=67705 # 1t3tA.309.1043 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)K310 (1t3tA)G1037 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1t3tA)R1039 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1t3tA)V1042 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :Q 1t3tA 1036 :T T0547 311 :K 1t3tA 1038 :A T0547 313 :LE 1t3tA 1040 :PK T0547 316 :DI 1t3tA 1043 :AV Number of specific fragments extracted= 4 number of extra gaps= 3 total=67709 # 1nnlA.309.167 read from T0547.t04.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)K311 (1nnlA)H170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1nnlA)K173 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1nnlA)I174 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1nnlA 168 :KF T0547 312 :DL 1nnlA 171 :FK T0547 316 :DI 1nnlA 175 :IM Number of specific fragments extracted= 3 number of extra gaps= 2 total=67712 # 2plc.309.245 read from T0547.t04.many.frag # found chain 2plc in template set Warning: unaligning (T0547)K311 (2plc)K268 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2plc)G271 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2plc)L272 because G (3-10) conformation "forbidden" or filtered. T0547 309 :QK 2plc 266 :SE T0547 312 :DL 2plc 269 :VR T0547 316 :DI 2plc 273 :GI Number of specific fragments extracted= 3 number of extra gaps= 2 total=67715 # 2c5aA.309.192 read from T0547.t04.many.frag # found chain 2c5aA in training set Warning: unaligning (T0547)P315 (2c5aA)R197 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKKDLE 2c5aA 191 :DFGIEC T0547 316 :DI 2c5aA 198 :IG Number of specific fragments extracted= 2 number of extra gaps= 1 total=67717 # 1y8aA.310.218 read from T0547.t04.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. T0547 310 :K 1y8aA 197 :K T0547 312 :DLEPDIF 1y8aA 199 :IDFPVVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=67719 # 1tca.310.93 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KK 1tca 94 :SG T0547 313 :LE 1tca 97 :NK T0547 316 :DIF 1tca 100 :PVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=67722 # 1v7zA.310.140 read from T0547.t04.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)K311 (1v7zA)G142 because L (left) conformation "forbidden" or filtered. T0547 310 :K 1v7zA 141 :A T0547 312 :DLEPDIF 1v7zA 143 :IQDFKVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=67724 # 1q0rA.310.90 read from T0547.t04.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)P315 (1q0rA)A96 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDLE 1q0rA 91 :WGVDR T0547 316 :DIF 1q0rA 97 :HVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=67726 # 1k8qA.310.141 read from T0547.t04.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)K311 (1k8qA)G143 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. T0547 310 :K 1k8qA 142 :T T0547 312 :DLE 1k8qA 144 :QDK T0547 316 :DIF 1k8qA 148 :HYV Number of specific fragments extracted= 3 number of extra gaps= 2 total=67729 # 2b61A.310.149 read from T0547.t04.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)K311 (2b61A)G132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2b61A)L136 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 2b61A 131 :L T0547 312 :DLE 2b61A 133 :ISH T0547 316 :DIF 2b61A 137 :KAI Number of specific fragments extracted= 3 number of extra gaps= 2 total=67732 # 1ug6A.310.208 read from T0547.t04.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)P315 (1ug6A)V214 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1ug6A)G215 because Y (epsilon') conformation "forbidden" or filtered. T0547 310 :KKDLE 1ug6A 209 :AGARR T0547 317 :IF 1ug6A 216 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=67734 # 2bfwA.310.30 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)P315 (2bfwA)G249 because Y (epsilon') conformation "forbidden" or filtered. T0547 310 :KKDLE 2bfwA 244 :FGMDE T0547 316 :DIF 2bfwA 250 :VTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=67736 # 1v33A.310.155 read from T0547.t04.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)K311 (1v33A)G137 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1v33A)D140 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1v33A)I141 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1v33A 136 :L T0547 312 :DL 1v33A 138 :FN T0547 316 :DIF 1v33A 142 :HII Number of specific fragments extracted= 3 number of extra gaps= 2 total=67739 # 1n3lA.310.201 read from T0547.t04.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE in next template residue (1n3lA)V208 Warning: unaligning (T0547)D316 because of BadResidue code BAD_PEPTIDE at template residue (1n3lA)V208 T0547 310 :KKDLE 1n3lA 202 :LGYSK T0547 317 :IF 1n3lA 209 :HL Number of specific fragments extracted= 2 number of extra gaps= 1 total=67741 # 2tpt.310.230 read from T0547.t04.many.frag # found chain 2tpt in template set Warning: unaligning (T0547)K311 (2tpt)G232 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2tpt)T236 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (2tpt)A237 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 2tpt 231 :A T0547 312 :DLE 2tpt 233 :VRT T0547 317 :IF 2tpt 238 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=67744 # 1ptmA.310.195 read from T0547.t04.many.frag # found chain 1ptmA in template set Warning: unaligning (T0547)K311 (1ptmA)G197 because L (left) conformation "forbidden" or filtered. T0547 310 :K 1ptmA 196 :F T0547 312 :DLEPDIF 1ptmA 198 :IAEPRIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=67746 # 2d1pB.310.70 read from T0547.t04.many.frag # found chain 2d1pB in template set Warning: unaligning (T0547)P315 (2d1pB)C76 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDLE 2d1pB 71 :YDIEQ T0547 316 :DIF 2d1pB 77 :WVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=67748 # 1uehA.310.131 read from T0547.t04.many.frag # found chain 1uehA in training set T0547 310 :KKDLEPDIF 1uehA 132 :AGNTGLTLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=67749 # 1t3tA.310.1044 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)E314 (1t3tA)K1041 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1t3tA)V1042 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDL 1t3tA 1037 :GARP T0547 316 :DIF 1t3tA 1043 :AVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=67751 # 1nv8A.310.237 read from T0547.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)K311 (1nv8A)D237 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1nv8A)G240 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1nv8A)K241 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1nv8A 236 :Y T0547 312 :DL 1nv8A 238 :TS T0547 316 :DIF 1nv8A 242 :IVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=67754 # 2d0oA.310.402 read from T0547.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0547)L313 (2d0oA)T406 because Y (epsilon') conformation "forbidden" or filtered. T0547 310 :KKD 2d0oA 403 :PGT T0547 314 :EPDIF 2d0oA 407 :RPLAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=67756 # 1fiqB.310.51 read from T0547.t04.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)D316 (1fiqB)M277 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDLEP 1fiqB 271 :KNQLFP T0547 317 :IF 1fiqB 278 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=67758 # 1nnlA.310.168 read from T0547.t04.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)P315 (1nnlA)I174 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDLE 1nnlA 169 :FHFKK T0547 316 :DIF 1nnlA 175 :IMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=67760 # 2plc.310.246 read from T0547.t04.many.frag # found chain 2plc in template set Warning: unaligning (T0547)K310 (2plc)E267 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (2plc)V269 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2plc)G271 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2plc)L272 because G (3-10) conformation "forbidden" or filtered. T0547 311 :K 2plc 268 :K T0547 313 :L 2plc 270 :R T0547 316 :DIF 2plc 273 :GIL Number of specific fragments extracted= 3 number of extra gaps= 3 total=67763 # 1h7sA.310.48 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)K311 (1h7sA)G50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1h7sA)I54 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1h7sA 49 :A T0547 312 :DLE 1h7sA 51 :ATN T0547 316 :DIF 1h7sA 55 :DLK Number of specific fragments extracted= 3 number of extra gaps= 2 total=67766 # 1jykA.310.68 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)P315 (1jykA)I54 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDLE 1jykA 49 :KGIND T0547 316 :DIF 1jykA 55 :III Number of specific fragments extracted= 2 number of extra gaps= 1 total=67768 # 1u14A.310.66 read from T0547.t04.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)K310 (1u14A)H66 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1u14A)F71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1u14A)W72 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 1u14A 67 :PQAD T0547 317 :IF 1u14A 73 :VA Number of specific fragments extracted= 2 number of extra gaps= 2 total=67770 # 1r44A.310.56 read from T0547.t04.many.frag # found chain 1r44A in template set Warning: unaligning (T0547)K310 because of BadResidue code BAD_PEPTIDE at template residue (1r44A)A57 Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE at template residue (1r44A)A58 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE at template residue (1r44A)T59 Warning: unaligning (T0547)L313 (1r44A)Q60 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1r44A)Y62 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1r44A 61 :G T0547 316 :DIF 1r44A 63 :GLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=67772 # 1ysrA.310.61 read from T0547.t04.many.frag # found chain 1ysrA in training set Warning: unaligning (T0547)K310 (1ysrA)G358 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1ysrA)V363 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 1ysrA 359 :GATL T0547 316 :DIF 1ysrA 364 :QLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=67774 # 1kufA.310.91 read from T0547.t04.many.frag # found chain 1kufA in template set Warning: unaligning (T0547)K311 (1kufA)N93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1kufA)H94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1kufA)A97 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1kufA 92 :K T0547 313 :LE 1kufA 95 :DH T0547 316 :DIF 1kufA 98 :QLL Number of specific fragments extracted= 3 number of extra gaps= 2 total=67777 # 1zk4A.310.175 read from T0547.t04.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)K311 (1zk4A)D177 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1zk4A)R181 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1zk4A 176 :K T0547 312 :DLE 1zk4A 178 :YDV T0547 316 :DIF 1zk4A 182 :VNT Number of specific fragments extracted= 3 number of extra gaps= 2 total=67780 # 1dpgA.310.105 read from T0547.t04.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)P315 (1dpgA)N111 because L (left) conformation "forbidden" or filtered. T0547 310 :KKDLE 1dpgA 106 :FDIDG T0547 316 :DIF 1dpgA 112 :RIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=67782 # 1fi4A.310.311 read from T0547.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0547)K311 (1fi4A)G293 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1fi4A)V297 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1fi4A)A298 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1fi4A 292 :Y T0547 312 :DLE 1fi4A 294 :ETI T0547 317 :IF 1fi4A 299 :YT Number of specific fragments extracted= 3 number of extra gaps= 2 total=67785 # 1qgoA.310.189 read from T0547.t04.many.frag # found chain 1qgoA in template set Warning: unaligning (T0547)K310 (1qgoA)E190 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1qgoA)G191 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1qgoA)G194 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1qgoA)V195 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DL 1qgoA 192 :VT T0547 316 :DIF 1qgoA 196 :HLM Number of specific fragments extracted= 2 number of extra gaps= 2 total=67787 # 1y8aA.311.219 read from T0547.t04.many.frag # found chain 1y8aA in training set T0547 311 :KDLEPDIFI 1y8aA 198 :GIDFPVVVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=67788 # 1tca.311.94 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 1tca 95 :GNNK T0547 316 :DIFI 1tca 100 :PVLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=67790 # 1v7zA.311.141 read from T0547.t04.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)K311 (1v7zA)G142 because L (left) conformation "forbidden" or filtered. T0547 312 :DLEPDIFI 1v7zA 143 :IQDFKVVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=67791 # 1i60A.311.132 read from T0547.t04.many.frag # found chain 1i60A in training set T0547 311 :KDLEPDIFI 1i60A 133 :EPYGVKIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67792 # 1q0rA.311.91 read from T0547.t04.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)K311 (1q0rA)G92 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1q0rA)A96 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1q0rA 93 :VDR T0547 316 :DIFI 1q0rA 97 :HVVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=67794 # 1k8qA.311.142 read from T0547.t04.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. T0547 311 :KDLE 1k8qA 143 :GQDK T0547 316 :DIFI 1k8qA 148 :HYVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=67796 # 1nv8A.311.238 read from T0547.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)E314 (1nv8A)G240 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1nv8A)K241 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1nv8A)I242 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDL 1nv8A 237 :DTS T0547 317 :IFI 1nv8A 243 :VLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=67798 # 1fiqB.311.52 read from T0547.t04.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)D312 (1fiqB)Q273 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :K 1fiqB 272 :N T0547 313 :LEPDIFI 1fiqB 274 :LFPMIIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=67800 # 1nnlA.311.169 read from T0547.t04.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)E314 (1nnlA)K173 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1nnlA)I174 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDL 1nnlA 170 :HFK T0547 316 :DIFI 1nnlA 175 :IMIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=67802 # 2tpt.311.231 read from T0547.t04.many.frag # found chain 2tpt in template set Warning: unaligning (T0547)P315 (2tpt)T236 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 2tpt 232 :GVRT T0547 316 :DIFI 2tpt 237 :ALLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=67804 # 2bfwA.311.31 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)K311 (2bfwA)G245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2bfwA)E248 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2bfwA)G249 because Y (epsilon') conformation "forbidden" or filtered. T0547 312 :DL 2bfwA 246 :MD T0547 316 :DIFI 2bfwA 250 :VTFM Number of specific fragments extracted= 2 number of extra gaps= 2 total=67806 # 1u14A.311.67 read from T0547.t04.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)P315 (1u14A)F71 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 1u14A 67 :PQAD T0547 316 :DIFI 1u14A 72 :WVAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=67808 # 2plc.311.247 read from T0547.t04.many.frag # found chain 2plc in template set Warning: unaligning (T0547)E314 (2plc)G271 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2plc)L272 because G (3-10) conformation "forbidden" or filtered. T0547 311 :KDL 2plc 268 :KVR T0547 316 :DIFI 2plc 273 :GILI Number of specific fragments extracted= 2 number of extra gaps= 1 total=67810 # 1ug6A.311.209 read from T0547.t04.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)K311 (1ug6A)G210 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1ug6A)A211 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1ug6A)V214 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1ug6A)G215 because Y (epsilon') conformation "forbidden" or filtered. T0547 313 :LE 1ug6A 212 :RR T0547 317 :IFI 1ug6A 216 :IVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=67812 # 1qj4A.311.69 read from T0547.t04.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)D312 (1qj4A)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1qj4A)V74 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :K 1qj4A 70 :P T0547 313 :LE 1qj4A 72 :EK T0547 316 :DIFI 1qj4A 75 :ILVG Number of specific fragments extracted= 3 number of extra gaps= 2 total=67815 # 1n3lA.311.202 read from T0547.t04.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)K311 (1n3lA)G203 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE in next template residue (1n3lA)V208 Warning: unaligning (T0547)D316 because of BadResidue code BAD_PEPTIDE at template residue (1n3lA)V208 T0547 312 :DLE 1n3lA 204 :YSK T0547 317 :IFI 1n3lA 209 :HLM Number of specific fragments extracted= 2 number of extra gaps= 2 total=67817 # 2b61A.311.150 read from T0547.t04.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)K311 (2b61A)G132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2b61A)L136 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I317 (2b61A)A138 because Y (epsilon') conformation "forbidden" or filtered. T0547 312 :DLE 2b61A 133 :ISH T0547 316 :D 2b61A 137 :K T0547 318 :FI 2b61A 139 :II Number of specific fragments extracted= 3 number of extra gaps= 3 total=67820 # 1r44A.311.57 read from T0547.t04.many.frag # found chain 1r44A in template set Warning: unaligning (T0547)K311 because of BadResidue code BAD_PEPTIDE at template residue (1r44A)A58 Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE at template residue (1r44A)T59 Warning: unaligning (T0547)P315 (1r44A)Y62 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1r44A 60 :QG T0547 316 :DIFI 1r44A 63 :GLLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=67822 # 1t3tA.311.1045 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)D312 (1t3tA)R1039 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1t3tA)V1042 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1t3tA)A1043 because P (beta_P) conformation "forbidden" or filtered. T0547 311 :K 1t3tA 1038 :A T0547 313 :LE 1t3tA 1040 :PK T0547 317 :IFI 1t3tA 1044 :VLR Number of specific fragments extracted= 3 number of extra gaps= 2 total=67825 # 1bc5A.311.97 read from T0547.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)L313 (1bc5A)G115 because S (epsilon) conformation "forbidden" or filtered. T0547 311 :KD 1bc5A 113 :RH T0547 314 :EPDIFI 1bc5A 116 :EYRVWS Number of specific fragments extracted= 2 number of extra gaps= 1 total=67827 # 1uehA.311.132 read from T0547.t04.many.frag # found chain 1uehA in training set T0547 311 :KDLEPDIFI 1uehA 133 :GNTGLTLNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=67828 # 1n2zA.311.130 read from T0547.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)E314 (1n2zA)K155 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1n2zA)K156 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDL 1n2zA 152 :DKP T0547 316 :DIFI 1n2zA 157 :RVFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=67830 # 1ptmA.311.196 read from T0547.t04.many.frag # found chain 1ptmA in template set Warning: unaligning (T0547)K311 (1ptmA)G197 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1ptmA)R202 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLEP 1ptmA 198 :IAEP T0547 317 :IFI 1ptmA 203 :ILV Number of specific fragments extracted= 2 number of extra gaps= 2 total=67832 # 1vh4A.311.81 read from T0547.t04.many.frag # found chain 1vh4A in training set Warning: unaligning (T0547)D312 (1vh4A)L81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1vh4A)S83 because Y (epsilon') conformation "forbidden" or filtered. T0547 311 :K 1vh4A 80 :T T0547 313 :L 1vh4A 82 :D T0547 315 :PDIFI 1vh4A 84 :VRLVF Number of specific fragments extracted= 3 number of extra gaps= 2 total=67835 # 1zedA.311.301 read from T0547.t04.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)K311 (1zedA)N302 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1zedA)F306 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1zedA 303 :PRG T0547 316 :DIFI 1zedA 307 :FLFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=67837 # 1dpgA.311.137 read from T0547.t04.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)D312 (1dpgA)T139 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L313 (1dpgA)G140 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1dpgA)N142 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :K 1dpgA 138 :D T0547 314 :E 1dpgA 141 :Y T0547 316 :DIFI 1dpgA 143 :RLMI Number of specific fragments extracted= 3 number of extra gaps= 2 total=67840 # 1v33A.311.156 read from T0547.t04.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)K311 (1v33A)G137 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1v33A)I141 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1v33A)H142 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1v33A 138 :FND T0547 317 :IFI 1v33A 143 :IIY Number of specific fragments extracted= 2 number of extra gaps= 2 total=67842 # 7odcA.311.264 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I319 (7odcA)A273 because Y (epsilon') conformation "forbidden" or filtered. T0547 311 :KDLEPDIF 7odcA 265 :SDSGVRII Number of specific fragments extracted= 1 number of extra gaps= 1 total=67843 # 2d0oA.311.403 read from T0547.t04.many.frag # found chain 2d0oA in template set T0547 311 :KDLEPDIFI 2d0oA 404 :GTTRPLAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=67844 # 1i1wA.311.197 read from T0547.t04.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)D316 (1i1wA)G203 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLEP 1i1wA 198 :GVPID T0547 317 :IFI 1i1wA 204 :IGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=67846 # 1y8aA.312.220 read from T0547.t04.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)E314 (1y8aA)F201 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)I319 (1y8aA)G206 because Y (epsilon') conformation "forbidden" or filtered. T0547 312 :DL 1y8aA 199 :ID T0547 315 :PDIF 1y8aA 202 :PVVV T0547 320 :E 1y8aA 207 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=67849 # 1tca.312.95 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1tca 97 :NK T0547 316 :DIFIE 1tca 100 :PVLTW Number of specific fragments extracted= 2 number of extra gaps= 2 total=67851 # 2bfwA.312.32 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)P315 (2bfwA)G249 because Y (epsilon') conformation "forbidden" or filtered. T0547 312 :DLE 2bfwA 246 :MDE T0547 316 :DIFIE 2bfwA 250 :VTFMF Number of specific fragments extracted= 2 number of extra gaps= 1 total=67853 # 7odcA.312.265 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E314 (7odcA)G268 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I319 (7odcA)A273 because Y (epsilon') conformation "forbidden" or filtered. T0547 312 :DL 7odcA 266 :DS T0547 315 :PDIF 7odcA 269 :VRII T0547 320 :E 7odcA 274 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=67856 # 1i60A.312.133 read from T0547.t04.many.frag # found chain 1i60A in training set T0547 312 :DLEPDIFIE 1i60A 134 :PYGVKIALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=67857 # 1fiqB.312.53 read from T0547.t04.many.frag # found chain 1fiqB in template set T0547 312 :DLEPDIFIE 1fiqB 273 :QLFPMIICP Number of specific fragments extracted= 1 number of extra gaps= 0 total=67858 # 1v7zA.312.142 read from T0547.t04.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)D316 (1v7zA)K147 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLEP 1v7zA 143 :IQDF T0547 317 :IFIE 1v7zA 148 :VVVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=67860 # 1e58A.312.173 read from T0547.t04.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)L313 (1e58A)G175 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1e58A)E176 because P (beta_P) conformation "forbidden" or filtered. T0547 312 :D 1e58A 174 :S T0547 315 :PDIFIE 1e58A 177 :RVIIAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=67862 # 1jx6A.312.231 read from T0547.t04.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)P315 (1jx6A)V258 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1jx6A 255 :HPD T0547 316 :DIFIE 1jx6A 259 :DFIYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=67864 # 1dpgA.312.138 read from T0547.t04.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)P315 (1dpgA)N142 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1dpgA 139 :TGY T0547 316 :DIFIE 1dpgA 143 :RLMIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=67866 # 1eu1A.312.450 read from T0547.t04.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)P315 (1eu1A)T454 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1eu1A)D459 because Y (epsilon') conformation "forbidden" or filtered. T0547 312 :DLE 1eu1A 451 :KLE T0547 316 :DIFI 1eu1A 455 :FIVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=67868 # 1bc5A.312.98 read from T0547.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)L313 (1bc5A)G115 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1bc5A)E116 because P (beta_P) conformation "forbidden" or filtered. T0547 312 :D 1bc5A 114 :H T0547 315 :PDIFIE 1bc5A 117 :YRVWSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=67870 # 2bhuA.312.299 read from T0547.t04.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)D312 (2bhuA)G300 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L313 (2bhuA)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 314 :EPDIFIE 2bhuA 302 :THLLLAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=67871 # 1qj4A.312.70 read from T0547.t04.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)P315 (1qj4A)V74 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1qj4A 71 :GEK T0547 316 :DIFIE 1qj4A 75 :ILVGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=67873 # 1zedA.312.302 read from T0547.t04.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)E314 (1zedA)G305 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1zedA)F306 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DL 1zedA 303 :PR T0547 316 :DIFIE 1zedA 307 :FLFVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=67875 # 1nv8A.312.239 read from T0547.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)P315 (1nv8A)K241 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1nv8A 238 :TSG T0547 316 :DIFIE 1nv8A 242 :IVLME Number of specific fragments extracted= 2 number of extra gaps= 1 total=67877 # 1c96A.312.434 read from T0547.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0547)D312 (1c96A)G436 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1c96A)N439 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1c96A)T440 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1c96A 437 :EK T0547 317 :IFIE 1c96A 441 :IVTS Number of specific fragments extracted= 2 number of extra gaps= 2 total=67879 # 1k8qA.312.143 read from T0547.t04.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)E314 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. T0547 312 :DL 1k8qA 144 :QD T0547 316 :DIFIE 1k8qA 148 :HYVGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=67881 # 1vh4A.312.82 read from T0547.t04.many.frag # found chain 1vh4A in training set Warning: unaligning (T0547)D312 (1vh4A)L81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1vh4A)S83 because Y (epsilon') conformation "forbidden" or filtered. T0547 313 :L 1vh4A 82 :D T0547 315 :PDIFIE 1vh4A 84 :VRLVFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=67883 # 1qtwA.312.136 read from T0547.t04.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)D312 (1qtwA)T137 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1qtwA)G139 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1qtwA)V140 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :L 1qtwA 138 :Q T0547 316 :DIFIE 1qtwA 141 :TAVIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=67885 # 1zc6A.312.119 read from T0547.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)D312 (1zc6A)G120 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L313 (1zc6A)G121 because T (delta_L) conformation "forbidden" or filtered. T0547 314 :EPDIFIE 1zc6A 122 :QPGIIVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=67886 # 1twdA.312.167 read from T0547.t04.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)L313 (1twdA)D169 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1twdA)G176 because Y (epsilon') conformation "forbidden" or filtered. T0547 312 :D 1twdA 168 :R T0547 314 :EPDIFI 1twdA 170 :APIIMA Number of specific fragments extracted= 2 number of extra gaps= 2 total=67888 # 1q92A.312.1 read from T0547.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0547)D312 because first residue in template chain is (1q92A)G33 Warning: unaligning (T0547)D316 (1q92A)R37 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LEP 1q92A 34 :RAL T0547 317 :IFIE 1q92A 38 :VLVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=67890 # 1j79A.312.167 read from T0547.t04.many.frag # found chain 1j79A in training set Warning: unaligning (T0547)D312 (1j79A)L168 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1j79A)K172 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :LEP 1j79A 169 :TAL T0547 317 :IFIE 1j79A 173 :VVFE Number of specific fragments extracted= 2 number of extra gaps= 2 total=67892 # 1yx1A.312.221 read from T0547.t04.many.frag # found chain 1yx1A in training set Warning: unaligning (T0547)D312 (1yx1A)P220 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :LEPDIFIE 1yx1A 221 :EGVARAIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=67893 # 2f6uA.312.187 read from T0547.t04.many.frag # found chain 2f6uA in training set T0547 312 :DLEPDIFIE 2f6uA 1185 :LDKARLFYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=67894 # 1r44A.312.58 read from T0547.t04.many.frag # found chain 1r44A in template set Warning: unaligning (T0547)D312 because of BadResidue code BAD_PEPTIDE at template residue (1r44A)T59 Warning: unaligning (T0547)L313 (1r44A)Q60 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1r44A)Y62 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1r44A 61 :G T0547 316 :DIFIE 1r44A 63 :GLLLW Number of specific fragments extracted= 2 number of extra gaps= 2 total=67896 # 2plc.312.248 read from T0547.t04.many.frag # found chain 2plc in template set Warning: unaligning (T0547)E314 (2plc)G271 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2plc)L272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (2plc)M277 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DL 2plc 269 :VR T0547 316 :DIFI 2plc 273 :GILI Number of specific fragments extracted= 2 number of extra gaps= 2 total=67898 # 1qopB.312.220 read from T0547.t04.many.frag # found chain 1qopB in training set Warning: unaligning (T0547)D316 (1qopB)A226 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLEP 1qopB 222 :RLPD T0547 317 :IFIE 1qopB 227 :VIAC Number of specific fragments extracted= 2 number of extra gaps= 1 total=67900 # 1ptmA.312.197 read from T0547.t04.many.frag # found chain 1ptmA in template set T0547 312 :DLEPDIFIE 1ptmA 198 :IAEPRILVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=67901 # 7odcA.313.266 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D316 (7odcA)R270 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (7odcA)E274 because D (zeta) conformation "forbidden" or filtered. T0547 313 :LEP 7odcA 267 :SGV T0547 317 :IFI 7odcA 271 :IIA T0547 321 :S 7odcA 275 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=67904 # 1tca.313.96 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1tca)P100 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :LE 1tca 97 :NK T0547 317 :IFIES 1tca 101 :VLTWS Number of specific fragments extracted= 2 number of extra gaps= 1 total=67906 # 1knwA.313.260 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L313 (1knwA)H261 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1knwA)P262 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1knwA)V263 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1knwA)P269 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :DIFIE 1knwA 264 :KLEIE Number of specific fragments extracted= 1 number of extra gaps= 2 total=67907 # 1jx6A.313.232 read from T0547.t04.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)P315 (1jx6A)V258 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1jx6A)A263 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1jx6A 256 :PD T0547 316 :DIFI 1jx6A 259 :DFIY T0547 321 :S 1jx6A 264 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=67910 # 1y8aA.313.221 read from T0547.t04.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)I319 (1y8aA)G206 because Y (epsilon') conformation "forbidden" or filtered. T0547 313 :LEPDIF 1y8aA 200 :DFPVVV T0547 320 :ES 1y8aA 207 :DS Number of specific fragments extracted= 2 number of extra gaps= 1 total=67912 # 2bfwA.313.33 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)P315 (2bfwA)G249 because Y (epsilon') conformation "forbidden" or filtered. T0547 313 :LE 2bfwA 247 :DE T0547 316 :DIFIES 2bfwA 250 :VTFMFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=67914 # 1i60A.313.134 read from T0547.t04.many.frag # found chain 1i60A in training set T0547 313 :LEPDIFIES 1i60A 135 :YGVKIALEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=67915 # 1c96A.313.435 read from T0547.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0547)P315 (1c96A)N439 because Y (epsilon') conformation "forbidden" or filtered. T0547 313 :LE 1c96A 437 :EK T0547 316 :DIFIES 1c96A 440 :TIVTSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=67917 # 1zedA.313.303 read from T0547.t04.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)P315 (1zedA)F306 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1zedA 304 :RG T0547 316 :DIFIES 1zedA 307 :FLFVEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=67919 # 1j79A.313.168 read from T0547.t04.many.frag # found chain 1j79A in training set Warning: unaligning (T0547)D316 (1j79A)K172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1j79A)H177 because L (left) conformation "forbidden" or filtered. T0547 313 :LEP 1j79A 169 :TAL T0547 317 :IFIE 1j79A 173 :VVFE Number of specific fragments extracted= 2 number of extra gaps= 2 total=67921 # 1qtwA.313.137 read from T0547.t04.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)E314 (1qtwA)G139 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1qtwA)V140 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :L 1qtwA 138 :Q T0547 316 :DIFIES 1qtwA 141 :TAVIEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=67923 # 2bhuA.313.300 read from T0547.t04.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)L313 (2bhuA)G301 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (2bhuA)L304 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :EP 2bhuA 302 :TH T0547 317 :IFIES 2bhuA 305 :LLAED Number of specific fragments extracted= 2 number of extra gaps= 2 total=67925 # 1eu1A.313.451 read from T0547.t04.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)P315 (1eu1A)T454 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1eu1A)D459 because Y (epsilon') conformation "forbidden" or filtered. T0547 313 :LE 1eu1A 452 :LE T0547 316 :DIFI 1eu1A 455 :FIVQ T0547 321 :S 1eu1A 460 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=67928 # 1tjyA.313.187 read from T0547.t04.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)P315 (1tjyA)L214 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1tjyA 212 :PD T0547 316 :DIFIES 1tjyA 215 :DAIIAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=67930 # 1qj4A.313.71 read from T0547.t04.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)P315 (1qj4A)V74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1qj4A)S80 because S (epsilon) conformation "forbidden" or filtered. T0547 313 :LE 1qj4A 72 :EK T0547 316 :DIFIE 1qj4A 75 :ILVGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=67932 # 1iuqA.313.221 read from T0547.t04.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)L313 (1iuqA)G223 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1iuqA)S224 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1iuqA)L226 because E (beta_S) conformation "forbidden" or filtered. T0547 315 :P 1iuqA 225 :Q T0547 317 :IFIES 1iuqA 227 :IWIAP Number of specific fragments extracted= 2 number of extra gaps= 2 total=67934 # 1muwA.313.172 read from T0547.t04.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)L313 because of BadResidue code BAD_PEPTIDE in next template residue (1muwA)D174 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)D174 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)I175 T0547 316 :DIFIES 1muwA 176 :RFAIEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=67935 # 1vh4A.313.83 read from T0547.t04.many.frag # found chain 1vh4A in training set Warning: unaligning (T0547)E314 (1vh4A)S83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1vh4A)V89 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :L 1vh4A 82 :D T0547 315 :PDIFI 1vh4A 84 :VRLVF T0547 321 :S 1vh4A 90 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=67938 # 1bc5A.313.99 read from T0547.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D316 (1bc5A)R118 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LEP 1bc5A 115 :GEY T0547 317 :IFIES 1bc5A 119 :VWSAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=67940 # 1ualA.313.123 read from T0547.t04.many.frag # found chain 1ualA in training set Warning: unaligning (T0547)E320 (1ualA)V111 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :LEPDIFI 1ualA 104 :QNQKLIL T0547 321 :S 1ualA 112 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=67942 # 1dpgA.313.139 read from T0547.t04.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)L313 (1dpgA)G140 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1dpgA)N142 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1dpgA 141 :Y T0547 316 :DIFIES 1dpgA 143 :RLMIEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=67944 # 1u7nA.313.91 read from T0547.t04.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)L313 (1u7nA)G89 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1u7nA)A91 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1u7nA 90 :E T0547 316 :DIFIES 1u7nA 92 :DAIFSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=67946 # 1ptmA.313.198 read from T0547.t04.many.frag # found chain 1ptmA in template set Warning: unaligning (T0547)D316 (1ptmA)R202 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LEP 1ptmA 199 :AEP T0547 317 :IFIES 1ptmA 203 :ILVCG Number of specific fragments extracted= 2 number of extra gaps= 1 total=67948 # 1v7zA.313.143 read from T0547.t04.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)D316 (1v7zA)K147 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LEP 1v7zA 144 :QDF T0547 317 :IFIES 1v7zA 148 :VVVLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=67950 # 1nv8A.313.240 read from T0547.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)P315 (1nv8A)K241 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1nv8A)E246 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :LE 1nv8A 239 :SG T0547 316 :DIFI 1nv8A 242 :IVLM T0547 321 :S 1nv8A 247 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=67953 # 1fiqB.313.54 read from T0547.t04.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)E314 (1fiqB)F275 because D (zeta) conformation "forbidden" or filtered. T0547 313 :L 1fiqB 274 :L T0547 315 :PDIFIES 1fiqB 276 :PMIICPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=67955 # 1pjhA.313.111 read from T0547.t04.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)S321 (1pjhA)N120 because G (3-10) conformation "forbidden" or filtered. T0547 313 :LEPDIFIE 1pjhA 112 :SKVLICCL Number of specific fragments extracted= 1 number of extra gaps= 1 total=67956 # 1k8qA.313.144 read from T0547.t04.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1k8qA)S153 because S (epsilon) conformation "forbidden" or filtered. T0547 313 :LE 1k8qA 145 :DK T0547 316 :DIFIE 1k8qA 148 :HYVGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=67958 # 1twdA.313.168 read from T0547.t04.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)L313 (1twdA)D169 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1twdA)A177 because L (left) conformation "forbidden" or filtered. T0547 314 :EPDIFIE 1twdA 170 :APIIMAG Number of specific fragments extracted= 1 number of extra gaps= 2 total=67959 # 1itxA.313.211 read from T0547.t04.many.frag # found chain 1itxA in training set Warning: unaligning (T0547)L313 (1itxA)K244 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1itxA)Y246 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1itxA)L247 because P (beta_P) conformation "forbidden" or filtered. T0547 314 :E 1itxA 245 :K T0547 317 :IFIES 1itxA 248 :LTIAS Number of specific fragments extracted= 2 number of extra gaps= 2 total=67961 # 7odcA.314.267 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)S321 (7odcA)P275 because P (beta_P) conformation "forbidden" or filtered. T0547 314 :EPDIFIE 7odcA 268 :GVRIIAE T0547 322 :G 7odcA 276 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=67963 # 1knwA.314.261 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P315 (1knwA)V263 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1knwA)K264 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1knwA)P269 because P (beta_P) conformation "forbidden" or filtered. T0547 314 :E 1knwA 262 :P T0547 317 :IFIE 1knwA 265 :LEIE T0547 322 :G 1knwA 270 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=67966 # 1tca.314.97 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1tca 98 :K T0547 316 :DIFIESG 1tca 100 :PVLTWSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=67968 # 2bfwA.314.34 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)E314 (2bfwA)E248 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2bfwA)G249 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (2bfwA)V250 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFIESG 2bfwA 251 :TFMFIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=67969 # 1zedA.314.304 read from T0547.t04.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)P315 (1zedA)F306 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1zedA)F307 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1zedA 305 :G T0547 317 :IFIESG 1zedA 308 :LFVEGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=67971 # 1c96A.314.436 read from T0547.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0547)P315 (1c96A)N439 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1c96A)T440 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1c96A)N446 because G (3-10) conformation "forbidden" or filtered. T0547 314 :E 1c96A 438 :K T0547 317 :IFIES 1c96A 441 :IVTSY Number of specific fragments extracted= 2 number of extra gaps= 2 total=67973 # 1jx6A.314.233 read from T0547.t04.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)P315 (1jx6A)V258 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I317 (1jx6A)F260 because Y (epsilon') conformation "forbidden" or filtered. T0547 314 :E 1jx6A 257 :D T0547 316 :D 1jx6A 259 :D T0547 318 :FIESG 1jx6A 261 :IYACS Number of specific fragments extracted= 3 number of extra gaps= 2 total=67976 # 1i60A.314.135 read from T0547.t04.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)D316 (1i60A)K138 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :EP 1i60A 136 :GV T0547 317 :IFIESG 1i60A 139 :IALEFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=67978 # 1eu1A.314.452 read from T0547.t04.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)P315 (1eu1A)T454 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1eu1A)D459 because Y (epsilon') conformation "forbidden" or filtered. T0547 314 :E 1eu1A 453 :E T0547 316 :DIFI 1eu1A 455 :FIVQ T0547 321 :SG 1eu1A 460 :FQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=67981 # 1ualA.314.124 read from T0547.t04.many.frag # found chain 1ualA in training set Warning: unaligning (T0547)E320 (1ualA)V111 because P (beta_P) conformation "forbidden" or filtered. T0547 314 :EPDIFI 1ualA 105 :NQKLIL T0547 321 :SG 1ualA 112 :CG Number of specific fragments extracted= 2 number of extra gaps= 1 total=67983 # 1qtwA.314.138 read from T0547.t04.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)P315 (1qtwA)V140 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1qtwA)T141 because P (beta_P) conformation "forbidden" or filtered. T0547 314 :E 1qtwA 139 :G T0547 317 :IFIESG 1qtwA 142 :AVIENT Number of specific fragments extracted= 2 number of extra gaps= 1 total=67985 # 1bc5A.314.100 read from T0547.t04.many.frag # found chain 1bc5A in template set T0547 314 :EPDIFIESG 1bc5A 116 :EYRVWSAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=67986 # 1vh4A.314.84 read from T0547.t04.many.frag # found chain 1vh4A in training set Warning: unaligning (T0547)E314 (1vh4A)S83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1vh4A)D90 because L (left) conformation "forbidden" or filtered. T0547 315 :PDIFIE 1vh4A 84 :VRLVFV T0547 322 :G 1vh4A 91 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=67988 # 1j79A.314.169 read from T0547.t04.many.frag # found chain 1j79A in training set Warning: unaligning (T0547)D316 (1j79A)K172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1j79A)H177 because L (left) conformation "forbidden" or filtered. T0547 314 :EP 1j79A 170 :AL T0547 317 :IFIE 1j79A 173 :VVFE T0547 322 :G 1j79A 178 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=67991 # 2bhuA.314.301 read from T0547.t04.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)D316 (2bhuA)L304 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (2bhuA)H310 because G (3-10) conformation "forbidden" or filtered. T0547 314 :EP 2bhuA 302 :TH T0547 317 :IFIES 2bhuA 305 :LLAED Number of specific fragments extracted= 2 number of extra gaps= 2 total=67993 # 1dpgA.314.140 read from T0547.t04.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)P315 (1dpgA)N142 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1dpgA)P149 because C (cis) conformation "forbidden" or filtered. T0547 314 :E 1dpgA 141 :Y T0547 316 :DIFIES 1dpgA 143 :RLMIEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=67995 # 1qj4A.314.72 read from T0547.t04.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)P315 (1qj4A)V74 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1qj4A 73 :K T0547 316 :DIFIESG 1qj4A 75 :ILVGESC Number of specific fragments extracted= 2 number of extra gaps= 1 total=67997 # 1iuqA.314.222 read from T0547.t04.many.frag # found chain 1iuqA in training set T0547 314 :EPDIFIESG 1iuqA 224 :SQLIWIAPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=67998 # 1pjhA.314.112 read from T0547.t04.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)G322 (1pjhA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0547 314 :EPDIFIES 1pjhA 113 :KVLICCLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=67999 # 1muwA.314.173 read from T0547.t04.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)D174 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)I175 Warning: unaligning (T0547)G322 (1muwA)K182 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIES 1muwA 176 :RFAIEP Number of specific fragments extracted= 1 number of extra gaps= 2 total=68000 # 1t3tA.314.1048 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)P315 (1t3tA)V1042 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1t3tA)E1047 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1t3tA 1041 :K T0547 316 :DIFI 1t3tA 1043 :AVLR T0547 321 :SG 1t3tA 1048 :QG Number of specific fragments extracted= 3 number of extra gaps= 2 total=68003 # 1u7nA.314.92 read from T0547.t04.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)P315 (1u7nA)A91 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1u7nA 90 :E T0547 316 :DIFIESG 1u7nA 92 :DAIFSAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=68005 # 1qopB.314.222 read from T0547.t04.many.frag # found chain 1qopB in training set T0547 314 :EPDIFIESG 1qopB 224 :PDAVIACVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=68006 # 1wzuA.314.189 read from T0547.t04.many.frag # found chain 1wzuA in template set T0547 314 :EPDIFIESG 1wzuA 190 :NAKLMIHPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=68007 # 1tjyA.314.188 read from T0547.t04.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)P315 (1tjyA)L214 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1tjyA 213 :D T0547 316 :DIFIESG 1tjyA 215 :DAIIAPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=68009 # 1ptmA.314.199 read from T0547.t04.many.frag # found chain 1ptmA in template set Warning: unaligning (T0547)D316 (1ptmA)R202 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :EP 1ptmA 200 :EP T0547 317 :IFIESG 1ptmA 203 :ILVCGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68011 # 2tpt.314.234 read from T0547.t04.many.frag # found chain 2tpt in template set Warning: unaligning (T0547)P315 (2tpt)T236 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 2tpt 235 :T T0547 316 :DIFIESG 2tpt 237 :ALLTDMN Number of specific fragments extracted= 2 number of extra gaps= 1 total=68013 # 1vb3A.314.239 read from T0547.t04.many.frag # found chain 1vb3A in template set T0547 314 :EPDIFIESG 1vb3A 240 :QLVVSVPSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=68014 # 1y8aA.314.222 read from T0547.t04.many.frag # found chain 1y8aA in training set T0547 314 :EPDIFIESG 1y8aA 201 :FPVVVGDSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=68015 # 1q92A.314.3 read from T0547.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0547)E314 (1q92A)A35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1q92A)R37 because E (beta_S) conformation "forbidden" or filtered. T0547 315 :P 1q92A 36 :L T0547 317 :IFIESG 1q92A 38 :VLVDMD Number of specific fragments extracted= 2 number of extra gaps= 2 total=68017 # 7odcA.315.268 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I319 (7odcA)A273 because Y (epsilon') conformation "forbidden" or filtered. T0547 315 :PDIF 7odcA 269 :VRII T0547 320 :ESGR 7odcA 274 :EPGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=68019 # 1knwA.315.262 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P315 (1knwA)V263 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1knwA)E268 because D (zeta) conformation "forbidden" or filtered. T0547 316 :DIFI 1knwA 264 :KLEI T0547 321 :SGR 1knwA 269 :PGR Number of specific fragments extracted= 2 number of extra gaps= 2 total=68021 # 1tca.315.98 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1tca 100 :PVLTWSQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=68022 # 1zedA.315.305 read from T0547.t04.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)P315 (1zedA)F306 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1zedA)F307 because E (beta_S) conformation "forbidden" or filtered. T0547 317 :IFIESGR 1zedA 308 :LFVEGGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=68023 # 2bfwA.315.35 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)P315 (2bfwA)G249 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (2bfwA)V250 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (2bfwA)R257 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFIESG 2bfwA 251 :TFMFIG Number of specific fragments extracted= 1 number of extra gaps= 2 total=68024 # 1ualA.315.125 read from T0547.t04.many.frag # found chain 1ualA in training set Warning: unaligning (T0547)D316 (1ualA)K107 because E (beta_S) conformation "forbidden" or filtered. T0547 315 :P 1ualA 106 :Q T0547 317 :IFIESGR 1ualA 108 :LILVCGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=68026 # 1jx6A.315.234 read from T0547.t04.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)P315 (1jx6A)V258 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1jx6A)S265 because Y (epsilon') conformation "forbidden" or filtered. T0547 316 :DIFIES 1jx6A 259 :DFIYAC T0547 323 :R 1jx6A 266 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=68028 # 1c96A.315.437 read from T0547.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0547)P315 (1c96A)N439 because Y (epsilon') conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1c96A 440 :TIVTSYNR Number of specific fragments extracted= 1 number of extra gaps= 1 total=68029 # 1vh4A.315.85 read from T0547.t04.many.frag # found chain 1vh4A in training set Warning: unaligning (T0547)S321 (1vh4A)D90 because L (left) conformation "forbidden" or filtered. T0547 315 :PDIFIE 1vh4A 84 :VRLVFV T0547 322 :GR 1vh4A 91 :GR Number of specific fragments extracted= 2 number of extra gaps= 1 total=68031 # 1i60A.315.136 read from T0547.t04.many.frag # found chain 1i60A in training set T0547 315 :PDIFIESGR 1i60A 137 :VKIALEFVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=68032 # 1eu1A.315.453 read from T0547.t04.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)P315 (1eu1A)T454 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1eu1A)D459 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1eu1A)Q461 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFI 1eu1A 455 :FIVQ T0547 321 :S 1eu1A 460 :F T0547 323 :R 1eu1A 462 :W Number of specific fragments extracted= 3 number of extra gaps= 3 total=68035 # 1j79A.315.170 read from T0547.t04.many.frag # found chain 1j79A in training set Warning: unaligning (T0547)S321 (1j79A)H177 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1j79A)T179 because G (3-10) conformation "forbidden" or filtered. T0547 315 :PDIFIE 1j79A 171 :LKVVFE T0547 322 :G 1j79A 178 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=68037 # 1muwA.315.174 read from T0547.t04.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)I175 Warning: unaligning (T0547)S321 (1muwA)P181 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :DIFIE 1muwA 176 :RFAIE T0547 322 :GR 1muwA 182 :KP Number of specific fragments extracted= 2 number of extra gaps= 2 total=68039 # 1qtwA.315.139 read from T0547.t04.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)P315 (1qtwA)V140 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1qtwA)T141 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFIESGR 1qtwA 142 :AVIENTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=68040 # 1bc5A.315.101 read from T0547.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D316 (1bc5A)R118 because E (beta_S) conformation "forbidden" or filtered. T0547 315 :P 1bc5A 117 :Y T0547 317 :IFIESGR 1bc5A 119 :VWSAAAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=68042 # 1q92A.315.4 read from T0547.t04.many.frag # found chain 1q92A in training set T0547 315 :PDIFIESGR 1q92A 36 :LRVLVDMDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=68043 # 2bhuA.315.302 read from T0547.t04.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)E320 (2bhuA)E308 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (2bhuA)H310 because G (3-10) conformation "forbidden" or filtered. T0547 315 :PDIFI 2bhuA 303 :HLLLA T0547 321 :S 2bhuA 309 :D T0547 323 :R 2bhuA 311 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=68046 # 1qj4A.315.73 read from T0547.t04.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)P315 (1qj4A)V74 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1qj4A 75 :ILVGESCG Number of specific fragments extracted= 1 number of extra gaps= 1 total=68047 # 1x7dA.315.287 read from T0547.t04.many.frag # found chain 1x7dA in training set Warning: unaligning (T0547)P315 (1x7dA)V288 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1x7dA 289 :TVFDSVGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=68048 # 1pjhA.315.113 read from T0547.t04.many.frag # found chain 1pjhA in template set T0547 315 :PDIFIESGR 1pjhA 114 :VLICCLNGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=68049 # 2tpt.315.235 read from T0547.t04.many.frag # found chain 2tpt in template set Warning: unaligning (T0547)P315 (2tpt)T236 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (2tpt)Q244 because Y (epsilon') conformation "forbidden" or filtered. T0547 316 :DIFIESG 2tpt 237 :ALLTDMN Number of specific fragments extracted= 1 number of extra gaps= 2 total=68050 # 1dpgA.315.141 read from T0547.t04.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)P315 (1dpgA)N142 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1dpgA)P149 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1dpgA)F150 because D (zeta) conformation "forbidden" or filtered. T0547 316 :DIFIES 1dpgA 143 :RLMIEK Number of specific fragments extracted= 1 number of extra gaps= 2 total=68051 # 1u7nA.315.93 read from T0547.t04.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)P315 (1u7nA)A91 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1u7nA 92 :DAIFSAGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=68052 # 1qopB.315.223 read from T0547.t04.many.frag # found chain 1qopB in training set T0547 315 :PDIFIESGR 1qopB 225 :DAVIACVGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=68053 # 1tjyA.315.189 read from T0547.t04.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)P315 (1tjyA)L214 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1tjyA 215 :DAIIAPDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=68054 # 1vb3A.315.240 read from T0547.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)D316 (1vb3A)V242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1vb3A)N249 because G (3-10) conformation "forbidden" or filtered. T0547 315 :P 1vb3A 241 :L T0547 317 :IFIESG 1vb3A 243 :VSVPSG Number of specific fragments extracted= 2 number of extra gaps= 2 total=68056 # 1iuqA.315.223 read from T0547.t04.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)R323 (1iuqA)G233 because T (delta_L) conformation "forbidden" or filtered. T0547 315 :PDIFIESG 1iuqA 225 :QLIWIAPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=68057 # 1pcxA.315.323 read from T0547.t04.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)P315 (1pcxA)G440 because Y (epsilon') conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1pcxA 441 :KIIVVSGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=68058 # 1woqA.315.76 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 315 :PDIFIESGR 1woqA 77 :PVGVTFPGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=68059 # 1uasA.315.157 read from T0547.t04.many.frag # found chain 1uasA in training set T0547 315 :PDIFIESGR 1uasA 158 :FFSLCEWGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=68060 # 7odcA.316.269 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D316 (7odcA)R270 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (7odcA)E274 because D (zeta) conformation "forbidden" or filtered. T0547 317 :IFI 7odcA 271 :IIA T0547 321 :SGRF 7odcA 275 :PGRY Number of specific fragments extracted= 2 number of extra gaps= 2 total=68062 # 1knwA.316.263 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 316 :DIFIESGRF 1knwA 264 :KLEIEPGRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=68063 # 1tca.316.99 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D316 (1tca)P100 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFIESGRF 1tca 101 :VLTWSQGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=68064 # 1zedA.316.306 read from T0547.t04.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)G322 (1zedA)G313 because H (helix) conformation "forbidden" or filtered. T0547 316 :DIFIES 1zedA 307 :FLFVEG T0547 323 :RF 1zedA 314 :RI Number of specific fragments extracted= 2 number of extra gaps= 1 total=68066 # 2bfwA.316.36 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)G322 (2bfwA)G256 because Y (epsilon') conformation "forbidden" or filtered. T0547 316 :DIFIES 2bfwA 250 :VTFMFI T0547 323 :RF 2bfwA 257 :RF Number of specific fragments extracted= 2 number of extra gaps= 1 total=68068 # 1vh4A.316.86 read from T0547.t04.many.frag # found chain 1vh4A in training set T0547 316 :DIFIESGRF 1vh4A 85 :RLVFVDGRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=68069 # 1ualA.316.126 read from T0547.t04.many.frag # found chain 1ualA in training set Warning: unaligning (T0547)E320 (1ualA)V111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1ualA)Y115 because S (epsilon) conformation "forbidden" or filtered. T0547 316 :DIFI 1ualA 107 :KLIL T0547 321 :SGR 1ualA 112 :CGR Number of specific fragments extracted= 2 number of extra gaps= 2 total=68071 # 1vb3A.316.241 read from T0547.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)D316 (1vb3A)V242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1vb3A)G248 because H (helix) conformation "forbidden" or filtered. T0547 317 :IFIES 1vb3A 243 :VSVPS T0547 323 :RF 1vb3A 249 :NF Number of specific fragments extracted= 2 number of extra gaps= 2 total=68073 # 1woqA.316.77 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 316 :DIFIESGRF 1woqA 78 :VGVTFPGII Number of specific fragments extracted= 1 number of extra gaps= 0 total=68074 # 1c96A.316.438 read from T0547.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0547)G322 (1c96A)N446 because G (3-10) conformation "forbidden" or filtered. T0547 316 :DIFIES 1c96A 440 :TIVTSY T0547 323 :RF 1c96A 447 :RN Number of specific fragments extracted= 2 number of extra gaps= 1 total=68076 # 1v71A.316.176 read from T0547.t04.many.frag # found chain 1v71A in training set Warning: unaligning (T0547)E320 (1v71A)C181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1v71A)G183 because H (helix) conformation "forbidden" or filtered. T0547 316 :DIFI 1v71A 177 :ALFV T0547 321 :S 1v71A 182 :L T0547 323 :RF 1v71A 184 :GG Number of specific fragments extracted= 3 number of extra gaps= 2 total=68079 # 1jx6A.316.235 read from T0547.t04.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)G322 (1jx6A)S265 because Y (epsilon') conformation "forbidden" or filtered. T0547 316 :DIFIES 1jx6A 259 :DFIYAC T0547 323 :RF 1jx6A 266 :TD Number of specific fragments extracted= 2 number of extra gaps= 1 total=68081 # 2tpt.316.236 read from T0547.t04.many.frag # found chain 2tpt in template set Warning: unaligning (T0547)E320 (2tpt)D241 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :DIFI 2tpt 237 :ALLT T0547 321 :SGRF 2tpt 242 :MNQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68083 # 2bhuA.316.303 read from T0547.t04.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)D316 (2bhuA)L304 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (2bhuA)N312 because L (left) conformation "forbidden" or filtered. T0547 317 :IFIESGR 2bhuA 305 :LLAEDHR Number of specific fragments extracted= 1 number of extra gaps= 2 total=68084 # 1x7dA.316.288 read from T0547.t04.many.frag # found chain 1x7dA in training set T0547 316 :DIFIESGRF 1x7dA 289 :TVFDSVGFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68085 # 1u7nA.316.94 read from T0547.t04.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)E320 (1u7nA)S96 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFI 1u7nA 92 :DAIF T0547 321 :SGRF 1u7nA 97 :AGNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=68087 # 1uasA.316.158 read from T0547.t04.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)S321 (1uasA)W164 because L (left) conformation "forbidden" or filtered. T0547 316 :DIFIE 1uasA 159 :FSLCE T0547 322 :GRF 1uasA 165 :GKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=68089 # 1pcxA.316.324 read from T0547.t04.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)S321 (1pcxA)S446 because Y (epsilon') conformation "forbidden" or filtered. T0547 316 :DIFIE 1pcxA 441 :KIIVV T0547 322 :GRF 1pcxA 447 :GTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68091 # 1gvfA.316.129 read from T0547.t04.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)D316 (1gvfA)S130 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1gvfA)E134 because E (beta_S) conformation "forbidden" or filtered. T0547 317 :IFI 1gvfA 131 :VEA T0547 321 :SGRF 1gvfA 135 :LGRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=68093 # 1eu1A.316.454 read from T0547.t04.many.frag # found chain 1eu1A in training set T0547 316 :DIFIESGRF 1eu1A 455 :FIVQDFQWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=68094 # 1muwA.316.175 read from T0547.t04.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)G322 (1muwA)K182 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIES 1muwA 176 :RFAIEP T0547 323 :RF 1muwA 183 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=68096 # 1m1nA.316.348 read from T0547.t04.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)S321 (1m1nA)I355 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1m1nA)G356 because H (helix) conformation "forbidden" or filtered. T0547 316 :DIFIE 1m1nA 350 :RVMLY T0547 323 :RF 1m1nA 357 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68098 # 1qj4A.316.74 read from T0547.t04.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)D316 (1qj4A)I75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1qj4A)E79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1qj4A)S80 because S (epsilon) conformation "forbidden" or filtered. T0547 317 :IFI 1qj4A 76 :LVG T0547 322 :GRF 1qj4A 81 :CGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=68100 # 1tjyA.316.190 read from T0547.t04.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)G322 (1tjyA)D221 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIES 1tjyA 215 :DAIIAP T0547 323 :RF 1tjyA 222 :AN Number of specific fragments extracted= 2 number of extra gaps= 1 total=68102 # 1qopB.316.224 read from T0547.t04.many.frag # found chain 1qopB in training set T0547 316 :DIFIESGRF 1qopB 226 :AVIACVGGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=68103 # 1xw8A.316.134 read from T0547.t04.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)R323 (1xw8A)S142 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :DIFIESG 1xw8A 135 :ILVGLAG T0547 324 :F 1xw8A 143 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=68105 # 1zz1A.316.303 read from T0547.t04.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)R323 (1zz1A)G311 because S (epsilon) conformation "forbidden" or filtered. T0547 316 :DIFIESG 1zz1A 304 :IVFVQEG T0547 324 :F 1zz1A 312 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=68107 # 1e58A.316.177 read from T0547.t04.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)E320 (1e58A)A182 because Y (epsilon') conformation "forbidden" or filtered. T0547 316 :DIFI 1e58A 178 :VIIA T0547 321 :SGRF 1e58A 183 :HGNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=68109 # 1qexA.316.94 read from T0547.t04.many.frag # found chain 1qexA in template set T0547 316 :DIFIESGRF 1qexA 95 :KVIIERGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=68110 # 1j79A.316.171 read from T0547.t04.many.frag # found chain 1j79A in training set Warning: unaligning (T0547)D316 (1j79A)K172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1j79A)H177 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1j79A)I178 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFIE 1j79A 173 :VVFE T0547 323 :RF 1j79A 179 :TT Number of specific fragments extracted= 2 number of extra gaps= 2 total=68112 # 1knwA.317.264 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 317 :IFIESGRFV 1knwA 265 :LEIEPGRFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=68113 # 7odcA.317.270 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 317 :IFIESGRFV 7odcA 271 :IIAEPGRYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=68114 # 1zedA.317.307 read from T0547.t04.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)R323 (1zedA)R314 because G (3-10) conformation "forbidden" or filtered. T0547 317 :IFIESG 1zedA 308 :LFVEGG T0547 324 :FV 1zedA 315 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=68116 # 1tca.317.100 read from T0547.t04.many.frag # found chain 1tca in training set T0547 317 :IFIESGRFV 1tca 101 :VLTWSQGGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=68117 # 1vh4A.317.87 read from T0547.t04.many.frag # found chain 1vh4A in training set Warning: unaligning (T0547)E320 (1vh4A)V89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1vh4A)D90 because L (left) conformation "forbidden" or filtered. T0547 317 :IFI 1vh4A 86 :LVF T0547 322 :GRFV 1vh4A 91 :GRYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68119 # 1vb3A.317.242 read from T0547.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)E320 (1vb3A)P246 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFI 1vb3A 243 :VSV T0547 321 :SGRFV 1vb3A 247 :SGNFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=68121 # 2bfwA.317.37 read from T0547.t04.many.frag # found chain 2bfwA in training set T0547 317 :IFIESGRFV 2bfwA 251 :TFMFIGRFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=68122 # 1v71A.317.177 read from T0547.t04.many.frag # found chain 1v71A in training set T0547 317 :IFIESGRFV 1v71A 178 :LFVCLGGGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=68123 # 1gvfA.317.130 read from T0547.t04.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)E320 (1gvfA)E134 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V325 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gvfA)S151 T0547 317 :IFI 1gvfA 131 :VEA T0547 321 :SGRF 1gvfA 135 :LGRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68125 # 1u7nA.317.95 read from T0547.t04.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)I317 (1u7nA)A93 because Y (epsilon') conformation "forbidden" or filtered. T0547 318 :FIESGRFV 1u7nA 94 :IFSAGNTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=68126 # 1eu1A.317.426 read from T0547.t04.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)R323 (1eu1A)G433 because Y (epsilon') conformation "forbidden" or filtered. T0547 317 :IFIESG 1eu1A 427 :LAYWAG T0547 324 :FV 1eu1A 434 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=68128 # 1ualA.317.127 read from T0547.t04.many.frag # found chain 1ualA in training set Warning: unaligning (T0547)E320 (1ualA)V111 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFI 1ualA 108 :LIL T0547 321 :SGRFV 1ualA 112 :CGRYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=68130 # 2tpt.317.237 read from T0547.t04.many.frag # found chain 2tpt in template set T0547 317 :IFIESGRFV 2tpt 238 :LLTDMNQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=68131 # 1zaiA.317.296 read from T0547.t04.many.frag # found chain 1zaiA in training set Warning: unaligning (T0547)F318 (1zaiA)T298 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1zaiA)S300 because D (zeta) conformation "forbidden" or filtered. T0547 317 :I 1zaiA 297 :L T0547 319 :I 1zaiA 299 :F T0547 321 :SGRFV 1zaiA 301 :YGRAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=68134 # 1eu1A.317.455 read from T0547.t04.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)E320 (1eu1A)D459 because Y (epsilon') conformation "forbidden" or filtered. T0547 317 :IFI 1eu1A 456 :IVQ T0547 321 :SGRFV 1eu1A 460 :FQWTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=68136 # 1xv5A.317.198 read from T0547.t04.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)E320 (1xv5A)W1201 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFI 1xv5A 1198 :INR T0547 321 :SGRFV 1xv5A 1202 :IGRTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=68138 # 1rwrA.317.121 read from T0547.t04.many.frag # found chain 1rwrA in training set T0547 317 :IFIESGRFV 1rwrA 122 :LTLTTGRPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=68139 # 1zc6A.317.124 read from T0547.t04.many.frag # found chain 1zc6A in template set T0547 317 :IFIESGRFV 1zc6A 125 :IIVALGTGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=68140 # 1woqA.317.78 read from T0547.t04.many.frag # found chain 1woqA in training set T0547 317 :IFIESGRFV 1woqA 79 :GVTFPGIIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=68141 # 1pcxA.317.325 read from T0547.t04.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)S321 (1pcxA)S446 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1pcxA)G447 because G (3-10) conformation "forbidden" or filtered. T0547 317 :IFIE 1pcxA 442 :IIVV T0547 323 :RFV 1pcxA 448 :TLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=68143 # 1ga6A.317.163 read from T0547.t04.many.frag # found chain 1ga6A in training set T0547 317 :IFIESGRFV 1ga6A 164 :FSVSSGDEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=68144 # 1ka9H.317.42 read from T0547.t04.many.frag # found chain 1ka9H in template set Warning: unaligning (T0547)F324 (1ka9H)G50 because S (epsilon) conformation "forbidden" or filtered. T0547 317 :IFIESGR 1ka9H 43 :LLVLPGQ T0547 325 :V 1ka9H 51 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=68146 # 1zpdA.317.383 read from T0547.t04.many.frag # found chain 1zpdA in template set T0547 317 :IFIESGRFV 1zpdA 384 :VIAETGDSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=68147 # 1uasA.317.159 read from T0547.t04.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)S321 (1uasA)W164 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1uasA)E167 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V325 (1uasA)N168 because L (left) conformation "forbidden" or filtered. T0547 317 :IFIE 1uasA 160 :SLCE T0547 322 :GR 1uasA 165 :GK Number of specific fragments extracted= 2 number of extra gaps= 2 total=68149 # 1x7dA.317.289 read from T0547.t04.many.frag # found chain 1x7dA in training set Warning: unaligning (T0547)G322 (1x7dA)G295 because S (epsilon) conformation "forbidden" or filtered. T0547 317 :IFIES 1x7dA 290 :VFDSV T0547 323 :RFV 1x7dA 296 :FAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68151 # 1jx6A.317.236 read from T0547.t04.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)I317 (1jx6A)F260 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1jx6A)S265 because Y (epsilon') conformation "forbidden" or filtered. T0547 318 :FIES 1jx6A 261 :IYAC T0547 323 :RFV 1jx6A 266 :TDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=68153 # 1xw8A.317.135 read from T0547.t04.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)I319 (1xw8A)G138 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1xw8A)L139 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IF 1xw8A 136 :LV T0547 321 :SGRFV 1xw8A 140 :AGSEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68155 # 1e58A.317.178 read from T0547.t04.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)E320 (1e58A)A182 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1e58A)G184 because H (helix) conformation "forbidden" or filtered. T0547 317 :IFI 1e58A 179 :IIA T0547 321 :S 1e58A 183 :H T0547 323 :RFV 1e58A 185 :NSL Number of specific fragments extracted= 3 number of extra gaps= 2 total=68158 # 2bhuA.317.304 read from T0547.t04.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)G322 (2bhuA)H310 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (2bhuA)N312 because L (left) conformation "forbidden" or filtered. T0547 317 :IFIES 2bhuA 305 :LLAED T0547 323 :R 2bhuA 311 :R T0547 325 :V 2bhuA 313 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=68161 # 1pzxA.317.260 read from T0547.t04.many.frag # found chain 1pzxA in template set Warning: unaligning (T0547)G322 (1pzxA)G264 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFIES 1pzxA 259 :FLSDI T0547 323 :RFV 1pzxA 265 :SAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=68163 # 1knwA.318.265 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E320 (1knwA)E268 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1knwA)G270 because H (helix) conformation "forbidden" or filtered. T0547 318 :FI 1knwA 266 :EI T0547 321 :S 1knwA 269 :P T0547 323 :RFVA 1knwA 271 :RFLV Number of specific fragments extracted= 3 number of extra gaps= 2 total=68166 # 7odcA.318.271 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 318 :FIESGRFVA 7odcA 272 :IAEPGRYYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=68167 # 1zedA.318.308 read from T0547.t04.many.frag # found chain 1zedA in training set T0547 318 :FIESGRFVA 1zedA 309 :FVEGGRIDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=68168 # 1vb3A.318.243 read from T0547.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)E320 (1vb3A)P246 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FI 1vb3A 244 :SV T0547 321 :SGRFVA 1vb3A 247 :SGNFGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=68170 # 1gvfA.318.131 read from T0547.t04.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)V325 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gvfA)S151 T0547 318 :FIESGRF 1gvfA 132 :EAELGRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=68171 # 1zaiA.318.297 read from T0547.t04.many.frag # found chain 1zaiA in training set Warning: unaligning (T0547)F318 (1zaiA)T298 because Y (epsilon') conformation "forbidden" or filtered. T0547 319 :IESGRFVA 1zaiA 299 :FSYGRALQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=68172 # 1eu1A.318.427 read from T0547.t04.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)R323 (1eu1A)G433 because Y (epsilon') conformation "forbidden" or filtered. T0547 318 :FIESG 1eu1A 428 :AYWAG T0547 324 :FVA 1eu1A 434 :NPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=68174 # 1v71A.318.178 read from T0547.t04.many.frag # found chain 1v71A in training set Warning: unaligning (T0547)E320 (1v71A)C181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1v71A)G185 because T (delta_L) conformation "forbidden" or filtered. T0547 318 :FI 1v71A 179 :FV T0547 321 :SGR 1v71A 182 :LGG T0547 325 :VA 1v71A 186 :GL Number of specific fragments extracted= 3 number of extra gaps= 2 total=68177 # 1tca.318.101 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)S321 (1tca)S105 because S (epsilon) conformation "forbidden" or filtered. T0547 318 :FIE 1tca 102 :LTW T0547 322 :GRFVA 1tca 106 :QGGLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68179 # 1vh4A.318.88 read from T0547.t04.many.frag # found chain 1vh4A in training set T0547 318 :FIESGRFVA 1vh4A 87 :VFVDGRYVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=68180 # 2bfwA.318.38 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)E320 (2bfwA)F254 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (2bfwA)G256 because Y (epsilon') conformation "forbidden" or filtered. T0547 318 :FI 2bfwA 252 :FM T0547 321 :S 2bfwA 255 :I T0547 323 :RFVA 2bfwA 257 :RFDR Number of specific fragments extracted= 3 number of extra gaps= 2 total=68183 # 1u7nA.318.96 read from T0547.t04.many.frag # found chain 1u7nA in template set T0547 318 :FIESGRFVA 1u7nA 94 :IFSAGNTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68184 # 1rwrA.318.122 read from T0547.t04.many.frag # found chain 1rwrA in training set T0547 318 :FIESGRFVA 1rwrA 123 :TLTTGRPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=68185 # 1xv5A.318.199 read from T0547.t04.many.frag # found chain 1xv5A in training set T0547 318 :FIESGRFVA 1xv5A 1199 :NRWIGRTTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=68186 # 1pzxA.318.261 read from T0547.t04.many.frag # found chain 1pzxA in template set Warning: unaligning (T0547)G322 (1pzxA)G264 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FIES 1pzxA 260 :LSDI T0547 323 :RFVA 1pzxA 265 :SAIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=68188 # 1eu1A.318.456 read from T0547.t04.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)E320 (1eu1A)D459 because Y (epsilon') conformation "forbidden" or filtered. T0547 318 :FI 1eu1A 457 :VQ T0547 321 :SGRFVA 1eu1A 460 :FQWTAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=68190 # 1x7dA.318.290 read from T0547.t04.many.frag # found chain 1x7dA in training set Warning: unaligning (T0547)E320 (1x7dA)S293 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FI 1x7dA 291 :FD T0547 321 :SGRFVA 1x7dA 294 :VGFALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=68192 # 1zpdA.318.384 read from T0547.t04.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)E320 (1zpdA)E387 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FI 1zpdA 385 :IA T0547 321 :SGRFVA 1zpdA 388 :TGDSWF Number of specific fragments extracted= 2 number of extra gaps= 1 total=68194 # 1m22A.318.182 read from T0547.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)R323 (1m22A)G225 because T (delta_L) conformation "forbidden" or filtered. T0547 318 :FIESG 1m22A 220 :GTETD T0547 324 :FVA 1m22A 226 :SIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68196 # 1ogoX.318.268 read from T0547.t04.many.frag # found chain 1ogoX in training set T0547 318 :FIESGRFVA 1ogoX 269 :YLAPGAYVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=68197 # 2bpa1.318.20 read from T0547.t04.many.frag # found chain 2bpa1 in template set T0547 318 :FIESGRFVA 2bpa1 21 :AGQIGRLIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=68198 # 2tpt.318.238 read from T0547.t04.many.frag # found chain 2tpt in template set T0547 318 :FIESGRFVA 2tpt 239 :LTDMNQVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68199 # 1svpA.318.106 read from T0547.t04.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)A326 (1svpA)M220 because E (beta_S) conformation "forbidden" or filtered. T0547 318 :FIESGRFV 1svpA 212 :RGDAGRPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=68200 # 1tz9A.318.324 read from T0547.t04.many.frag # found chain 1tz9A in template set Warning: unaligning (T0547)E320 (1tz9A)D317 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1tz9A)W323 because L (left) conformation "forbidden" or filtered. T0547 318 :FI 1tz9A 315 :RP T0547 321 :SGRFV 1tz9A 318 :HGRAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=68202 # 1p7tA.318.423 read from T0547.t04.many.frag # found chain 1p7tA in template set T0547 318 :FIESGRFVA 1p7tA 424 :IMDEERRTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=68203 # 1vlpA.318.361 read from T0547.t04.many.frag # found chain 1vlpA in training set T0547 318 :FIESGRFVA 1vlpA 350 :TFGIGTNFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=68204 # 1zc6A.318.125 read from T0547.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)A326 (1zc6A)I134 because Y (epsilon') conformation "forbidden" or filtered. T0547 318 :FIESGRFV 1zc6A 126 :IVALGTGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=68205 # 1qlmA.318.166 read from T0547.t04.many.frag # found chain 1qlmA in template set T0547 318 :FIESGRFVA 1qlmA 167 :LVAPTASIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=68206 # 1ualA.318.128 read from T0547.t04.many.frag # found chain 1ualA in training set Warning: unaligning (T0547)G322 (1ualA)G113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1ualA)Y115 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)V325 (1ualA)E116 because G (3-10) conformation "forbidden" or filtered. T0547 318 :FIES 1ualA 109 :ILVC T0547 323 :R 1ualA 114 :R T0547 326 :A 1ualA 117 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=68209 # 1ka9H.318.43 read from T0547.t04.many.frag # found chain 1ka9H in template set Warning: unaligning (T0547)F324 (1ka9H)G50 because S (epsilon) conformation "forbidden" or filtered. T0547 318 :FIESGR 1ka9H 44 :LVLPGQ T0547 325 :VA 1ka9H 51 :HF Number of specific fragments extracted= 2 number of extra gaps= 1 total=68211 # 1knwA.319.266 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 319 :IESGRFVAA 1knwA 267 :IEPGRFLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68212 # 7odcA.319.272 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 319 :IESGRFVAA 7odcA 273 :AEPGRYYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68213 # 1zedA.319.309 read from T0547.t04.many.frag # found chain 1zedA in training set T0547 319 :IESGRFVAA 1zedA 310 :VEGGRIDHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=68214 # 1vb3A.319.244 read from T0547.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)E320 (1vb3A)P246 because P (beta_P) conformation "forbidden" or filtered. T0547 319 :I 1vb3A 245 :V T0547 321 :SGRFVAA 1vb3A 247 :SGNFGDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68216 # 1zaiA.319.298 read from T0547.t04.many.frag # found chain 1zaiA in training set T0547 319 :IESGRFVAA 1zaiA 299 :FSYGRALQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68217 # 1eu1A.319.428 read from T0547.t04.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)R323 (1eu1A)G433 because Y (epsilon') conformation "forbidden" or filtered. T0547 319 :IESG 1eu1A 429 :YWAG T0547 324 :FVAA 1eu1A 434 :NPFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=68219 # 1q7zA.319.402 read from T0547.t04.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)G322 (1q7zA)G406 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1q7zA)N411 because P (beta_P) conformation "forbidden" or filtered. T0547 319 :IES 1q7zA 403 :AYP T0547 323 :RFVA 1q7zA 407 :RSLF Number of specific fragments extracted= 2 number of extra gaps= 2 total=68221 # 1v71A.319.179 read from T0547.t04.many.frag # found chain 1v71A in training set Warning: unaligning (T0547)G322 (1v71A)G183 because H (helix) conformation "forbidden" or filtered. T0547 319 :IES 1v71A 180 :VCL T0547 323 :RFVAA 1v71A 184 :GGGLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68223 # 1svpA.319.107 read from T0547.t04.many.frag # found chain 1svpA in template set T0547 319 :IESGRFVAA 1svpA 213 :GDAGRPIMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=68224 # 1rwrA.319.123 read from T0547.t04.many.frag # found chain 1rwrA in training set Warning: unaligning (T0547)G322 (1rwrA)G127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1rwrA)N132 because D (zeta) conformation "forbidden" or filtered. T0547 319 :IES 1rwrA 124 :LTT T0547 323 :RFVA 1rwrA 128 :RPSV Number of specific fragments extracted= 2 number of extra gaps= 2 total=68226 # 1tca.319.102 read from T0547.t04.many.frag # found chain 1tca in training set T0547 319 :IESGRFVAA 1tca 103 :TWSQGGLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68227 # 1gvfA.319.132 read from T0547.t04.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)G322 (1gvfA)G136 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)V325 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gvfA)S151 T0547 319 :IES 1gvfA 133 :AEL T0547 323 :RF 1gvfA 137 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68229 # 1ogoX.319.269 read from T0547.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0547)A327 (1ogoX)G278 because Y (epsilon') conformation "forbidden" or filtered. T0547 319 :IESGRFVA 1ogoX 270 :LAPGAYVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=68230 # 1vh4A.319.89 read from T0547.t04.many.frag # found chain 1vh4A in training set Warning: unaligning (T0547)S321 (1vh4A)D90 because L (left) conformation "forbidden" or filtered. T0547 319 :IE 1vh4A 88 :FV T0547 322 :GRFVAA 1vh4A 91 :GRYVPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=68232 # 1xv5A.319.200 read from T0547.t04.many.frag # found chain 1xv5A in training set T0547 319 :IESGRFVAA 1xv5A 1200 :RWIGRTTTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=68233 # 1pq7A.319.177 read from T0547.t04.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)I319 (1pq7A)G193 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 because of BadResidue code BAD_PEPTIDE in next template residue (1pq7A)I199 Warning: unaligning (T0547)V325 because of BadResidue code BAD_PEPTIDE at template residue (1pq7A)I199 T0547 320 :ESGR 1pq7A 194 :DSGG T0547 326 :AA 1pq7A 200 :VD Number of specific fragments extracted= 2 number of extra gaps= 2 total=68235 1eybA expands to /projects/compbio/data/pdb/1eyb.pdb.gz 1eybA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1eybA.319.174 read from T0547.t04.many.frag # adding 1eybA to template set # found chain 1eybA in template set Warning: unaligning (T0547)A327 (1eybA)V157 because D (zeta) conformation "forbidden" or filtered. T0547 319 :IESGRFVA 1eybA 149 :NSDGDFLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=68236 # 1qlmA.319.167 read from T0547.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)E320 (1qlmA)A169 because E (beta_S) conformation "forbidden" or filtered. T0547 319 :I 1qlmA 168 :V T0547 321 :SGRFVAA 1qlmA 170 :PTASIVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=68238 # 2bpa1.319.21 read from T0547.t04.many.frag # found chain 2bpa1 in template set T0547 319 :IESGRFVAA 2bpa1 22 :GQIGRLITI Number of specific fragments extracted= 1 number of extra gaps= 0 total=68239 # 1pzxA.319.262 read from T0547.t04.many.frag # found chain 1pzxA in template set T0547 319 :IESGRFVAA 1pzxA 261 :SDIGSAIGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68240 # 1zhxA.319.218 read from T0547.t04.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)S321 (1zhxA)G217 because S (epsilon) conformation "forbidden" or filtered. T0547 319 :IE 1zhxA 215 :LE T0547 322 :GRFVAA 1zhxA 218 :KSYIQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=68242 # 1u7nA.319.97 read from T0547.t04.many.frag # found chain 1u7nA in template set T0547 319 :IESGRFVAA 1u7nA 95 :FSAGNTGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=68243 # 2bfwA.319.39 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)R323 (2bfwA)R257 because P (beta_P) conformation "forbidden" or filtered. T0547 319 :IESG 2bfwA 253 :MFIG T0547 324 :FVAA 2bfwA 258 :FDRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=68245 # 1zc6A.319.126 read from T0547.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)V325 (1zc6A)S133 because Y (epsilon') conformation "forbidden" or filtered. T0547 319 :IESGRF 1zc6A 127 :VALGTG T0547 326 :AA 1zc6A 134 :IG Number of specific fragments extracted= 2 number of extra gaps= 1 total=68247 # 1m22A.319.183 read from T0547.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)G322 (1m22A)D224 because D (zeta) conformation "forbidden" or filtered. T0547 319 :IES 1m22A 221 :TET T0547 323 :RFVAA 1m22A 225 :GSIVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=68249 # 1tz9A.319.325 read from T0547.t04.many.frag # found chain 1tz9A in template set Warning: unaligning (T0547)E320 (1tz9A)D317 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1tz9A)G319 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1tz9A)W323 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1tz9A)D324 because L (left) conformation "forbidden" or filtered. T0547 319 :I 1tz9A 316 :P T0547 321 :S 1tz9A 318 :H T0547 323 :RFV 1tz9A 320 :RAI Number of specific fragments extracted= 3 number of extra gaps= 3 total=68252 # 1x7dA.319.291 read from T0547.t04.many.frag # found chain 1x7dA in training set Warning: unaligning (T0547)S321 (1x7dA)V294 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1x7dA)G295 because S (epsilon) conformation "forbidden" or filtered. T0547 319 :IE 1x7dA 292 :DS T0547 323 :RFVAA 1x7dA 296 :FALED Number of specific fragments extracted= 2 number of extra gaps= 1 total=68254 # 1mg7A.319.297 read from T0547.t04.many.frag # found chain 1mg7A in training set Warning: unaligning (T0547)E320 (1mg7A)Q305 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1mg7A)G308 because Y (epsilon') conformation "forbidden" or filtered. T0547 319 :I 1mg7A 304 :V T0547 321 :SG 1mg7A 306 :QG T0547 324 :FVAA 1mg7A 309 :ILVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=68257 # 1vlpA.319.362 read from T0547.t04.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)A327 (1vlpA)N359 because D (zeta) conformation "forbidden" or filtered. T0547 319 :IESGRFVA 1vlpA 351 :FGIGTNFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=68258 # 1rcqA.319.206 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A327 (1rcqA)G215 because L (left) conformation "forbidden" or filtered. T0547 319 :IESGRFVA 1rcqA 207 :VRPGILLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=68259 # 1knwA.320.267 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 320 :ESGRFVAAN 1knwA 268 :EPGRFLVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=68260 # 7odcA.320.273 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E320 (7odcA)E274 because D (zeta) conformation "forbidden" or filtered. T0547 321 :SGRFVAAN 7odcA 275 :PGRYYVAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=68261 # 1q7zA.320.403 read from T0547.t04.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)G322 (1q7zA)G406 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1q7zA)F410 because E (beta_S) conformation "forbidden" or filtered. T0547 320 :ES 1q7zA 404 :YP T0547 323 :RFV 1q7zA 407 :RSL T0547 327 :AN 1q7zA 411 :NS Number of specific fragments extracted= 3 number of extra gaps= 2 total=68264 # 1zaiA.320.299 read from T0547.t04.many.frag # found chain 1zaiA in training set T0547 320 :ESGRFVAAN 1zaiA 300 :SYGRALQAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=68265 # 1svpA.320.108 read from T0547.t04.many.frag # found chain 1svpA in template set T0547 320 :ESGRFVAAN 1svpA 214 :DAGRPIMDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=68266 # 1zedA.320.310 read from T0547.t04.many.frag # found chain 1zedA in training set T0547 320 :ESGRFVAAN 1zedA 311 :EGGRIDHGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=68267 # 1pq7A.320.178 read from T0547.t04.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)F324 because of BadResidue code BAD_PEPTIDE in next template residue (1pq7A)I199 Warning: unaligning (T0547)V325 because of BadResidue code BAD_PEPTIDE at template residue (1pq7A)I199 T0547 320 :ESGR 1pq7A 194 :DSGG T0547 326 :AAN 1pq7A 200 :VDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=68269 # 1tca.320.103 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)E320 (1tca)W104 because E (beta_S) conformation "forbidden" or filtered. T0547 321 :SGRFVAAN 1tca 105 :SQGGLVAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=68270 # 1v0wA.320.165 read from T0547.t04.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)E320 because of BadResidue code BAD_PEPTIDE in next template residue (1v0wA)H170 Warning: unaligning (T0547)S321 because of BadResidue code BAD_PEPTIDE at template residue (1v0wA)H170 Warning: unaligning (T0547)G322 (1v0wA)S171 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1v0wA)K172 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1v0wA)D177 because L (left) conformation "forbidden" or filtered. T0547 324 :FVAA 1v0wA 173 :ILVV Number of specific fragments extracted= 1 number of extra gaps= 2 total=68271 # 1vb3A.320.245 read from T0547.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)F324 (1vb3A)F250 because L (left) conformation "forbidden" or filtered. T0547 320 :ESGR 1vb3A 246 :PSGN T0547 325 :VAAN 1vb3A 251 :GDLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=68273 # 1v71A.320.180 read from T0547.t04.many.frag # found chain 1v71A in training set Warning: unaligning (T0547)F324 (1v71A)G185 because T (delta_L) conformation "forbidden" or filtered. T0547 320 :ESGR 1v71A 181 :CLGG T0547 325 :VAAN 1v71A 186 :GLLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=68275 # 1eu1A.320.429 read from T0547.t04.many.frag # found chain 1eu1A in training set T0547 320 :ESGRFVAAN 1eu1A 430 :WAGGNPFAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=68276 # 1fx2A.320.171 read from T0547.t04.many.frag # found chain 1fx2A in training set T0547 320 :ESGRFVAAN 1fx2A 1059 :NGGQVLMTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=68277 # 1xv5A.320.201 read from T0547.t04.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)R323 (1xv5A)R1204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1xv5A)K1209 because G (3-10) conformation "forbidden" or filtered. T0547 320 :ESG 1xv5A 1201 :WIG T0547 324 :FVAA 1xv5A 1205 :TTTW Number of specific fragments extracted= 2 number of extra gaps= 2 total=68279 # 1eybA.320.175 read from T0547.t04.many.frag # found chain 1eybA in template set Warning: unaligning (T0547)A327 (1eybA)V157 because D (zeta) conformation "forbidden" or filtered. T0547 320 :ESGRFVA 1eybA 150 :SDGDFLI T0547 328 :N 1eybA 158 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=68281 # 1qlmA.320.168 read from T0547.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)S321 (1qlmA)P170 because P (beta_P) conformation "forbidden" or filtered. T0547 320 :E 1qlmA 169 :A T0547 322 :GRFVAAN 1qlmA 171 :TASIVGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=68283 # 1zbxB.320.10 read from T0547.t04.many.frag # found chain 1zbxB in template set T0547 320 :ESGRFVAAN 1zbxB 490 :VSPRFLVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=68284 # 2bpa1.320.22 read from T0547.t04.many.frag # found chain 2bpa1 in template set T0547 320 :ESGRFVAAN 2bpa1 23 :QIGRLITIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=68285 # 1zc6A.320.127 read from T0547.t04.many.frag # found chain 1zc6A in template set T0547 320 :ESGRFVAAN 1zc6A 128 :ALGTGSIGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=68286 # 1k3xA.320.48 read from T0547.t04.many.frag # found chain 1k3xA in training set Warning: unaligning (T0547)A326 (1k3xA)L55 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1k3xA)H57 because P (beta_P) conformation "forbidden" or filtered. T0547 320 :ESGRFV 1k3xA 49 :TRGKAL T0547 327 :A 1k3xA 56 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=68288 # 1s3eA.320.54 read from T0547.t04.many.frag # found chain 1s3eA in training set T0547 320 :ESGRFVAAN 1s3eA 55 :DLGGSYVGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=68289 # 1m22A.320.184 read from T0547.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)E320 (1m22A)E222 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1m22A)D224 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1m22A)G225 because T (delta_L) conformation "forbidden" or filtered. T0547 321 :S 1m22A 223 :T T0547 324 :FVAAN 1m22A 226 :SIVCP Number of specific fragments extracted= 2 number of extra gaps= 2 total=68291 # 1rwrA.320.124 read from T0547.t04.many.frag # found chain 1rwrA in training set Warning: unaligning (T0547)A327 (1rwrA)N132 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1rwrA)G133 because S (epsilon) conformation "forbidden" or filtered. T0547 320 :ESGRFVA 1rwrA 125 :TTGRPSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=68292 # 1zhxA.320.219 read from T0547.t04.many.frag # found chain 1zhxA in training set T0547 320 :ESGRFVAAN 1zhxA 216 :EGKSYIQSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=68293 # 1ogoX.320.270 read from T0547.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0547)A327 (1ogoX)G278 because Y (epsilon') conformation "forbidden" or filtered. T0547 320 :ESGRFVA 1ogoX 271 :APGAYVK T0547 328 :N 1ogoX 279 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=68295 # 1zhxA.320.117 read from T0547.t04.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)A327 (1zhxA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0547 320 :ESGRFVA 1zhxA 114 :FLGELFV T0547 328 :N 1zhxA 122 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=68297 # 1pzxA.320.263 read from T0547.t04.many.frag # found chain 1pzxA in template set T0547 320 :ESGRFVAAN 1pzxA 262 :DIGSAIGAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=68298 # 1kjqA.320.186 read from T0547.t04.many.frag # found chain 1kjqA in training set T0547 320 :ESGRFVAAN 1kjqA 188 :GAGRVIVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=68299 # 1kuuA.320.1 read from T0547.t04.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)G322 (1kuuA)G4 because S (epsilon) conformation "forbidden" or filtered. T0547 320 :ES 1kuuA 2 :YL T0547 323 :RFVAAN 1kuuA 5 :RILAVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=68301 # 1uvjA.320.450 read from T0547.t04.many.frag # found chain 1uvjA in template set Warning: unaligning (T0547)F324 (1uvjA)A455 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1uvjA)G458 because E (beta_S) conformation "forbidden" or filtered. T0547 320 :ESGR 1uvjA 451 :KSDD T0547 325 :VA 1uvjA 456 :ML T0547 328 :N 1uvjA 459 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=68304 # 1knwA.321.268 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 321 :SGRFVAANH 1knwA 269 :PGRFLVAQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=68305 # 7odcA.321.274 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)S321 (7odcA)P275 because P (beta_P) conformation "forbidden" or filtered. T0547 322 :GRFVAANH 7odcA 276 :GRYYVASA Number of specific fragments extracted= 1 number of extra gaps= 1 total=68306 # 1zaiA.321.300 read from T0547.t04.many.frag # found chain 1zaiA in training set Warning: unaligning (T0547)A326 (1zaiA)Q306 because G (3-10) conformation "forbidden" or filtered. T0547 321 :SGRFV 1zaiA 301 :YGRAL T0547 327 :ANH 1zaiA 307 :ASA Number of specific fragments extracted= 2 number of extra gaps= 1 total=68308 # 1q7zA.321.404 read from T0547.t04.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)N328 (1q7zA)S412 because S (epsilon) conformation "forbidden" or filtered. T0547 321 :SGRFVAA 1q7zA 405 :PGRSLFN T0547 329 :H 1q7zA 413 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=68310 # 1v0wA.321.166 read from T0547.t04.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)S321 because of BadResidue code BAD_PEPTIDE at template residue (1v0wA)H170 Warning: unaligning (T0547)G322 (1v0wA)S171 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1v0wA)G178 because T (delta_L) conformation "forbidden" or filtered. T0547 323 :RFVAAN 1v0wA 172 :KILVVD Number of specific fragments extracted= 1 number of extra gaps= 2 total=68311 # 1svpA.321.109 read from T0547.t04.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)S321 (1svpA)A215 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1svpA)R217 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1svpA)D221 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1svpA)S223 because G (3-10) conformation "forbidden" or filtered. T0547 322 :G 1svpA 216 :G T0547 324 :FVA 1svpA 218 :PIM T0547 328 :N 1svpA 222 :N Number of specific fragments extracted= 3 number of extra gaps= 4 total=68314 # 1pq7A.321.179 read from T0547.t04.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)F324 because of BadResidue code BAD_PEPTIDE in next template residue (1pq7A)I199 Warning: unaligning (T0547)V325 because of BadResidue code BAD_PEPTIDE at template residue (1pq7A)I199 Warning: unaligning (T0547)A327 (1pq7A)D201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1pq7A)S203 because G (3-10) conformation "forbidden" or filtered. T0547 321 :SGR 1pq7A 195 :SGG T0547 326 :A 1pq7A 200 :V T0547 328 :N 1pq7A 202 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=68317 # 1tca.321.104 read from T0547.t04.many.frag # found chain 1tca in training set T0547 321 :SGRFVAANH 1tca 105 :SQGGLVAQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=68318 # 1fx2A.321.172 read from T0547.t04.many.frag # found chain 1fx2A in training set T0547 321 :SGRFVAANH 1fx2A 1060 :GGQVLMTHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68319 # 1k3xA.321.49 read from T0547.t04.many.frag # found chain 1k3xA in training set Warning: unaligning (T0547)A326 (1k3xA)L55 because D (zeta) conformation "forbidden" or filtered. T0547 321 :SGRFV 1k3xA 50 :RGKAL T0547 327 :ANH 1k3xA 56 :THF Number of specific fragments extracted= 2 number of extra gaps= 1 total=68321 # 1eybA.321.176 read from T0547.t04.many.frag # found chain 1eybA in template set Warning: unaligning (T0547)G322 (1eybA)G152 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1eybA)V157 because D (zeta) conformation "forbidden" or filtered. T0547 321 :S 1eybA 151 :D T0547 323 :RFVA 1eybA 153 :DFLI T0547 328 :NH 1eybA 158 :PQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=68324 # 1s3eA.321.55 read from T0547.t04.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)A326 (1s3eA)V61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1s3eA)G62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1s3eA)T64 because T (delta_L) conformation "forbidden" or filtered. T0547 321 :SGRFV 1s3eA 56 :LGGSY T0547 328 :N 1s3eA 63 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=68326 # 1zhxA.321.220 read from T0547.t04.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)H329 (1zhxA)T225 because G (3-10) conformation "forbidden" or filtered. T0547 321 :SGRFVAAN 1zhxA 217 :GKSYIQSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=68327 # 1arb.321.193 read from T0547.t04.many.frag # found chain 1arb in training set T0547 321 :SGRFVAANH 1arb 194 :SGSPIYSPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=68328 # 1lvmA.321.158 read from T0547.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0547)S321 (1lvmA)C151 because P (beta_P) conformation "forbidden" or filtered. T0547 322 :GRFVAANH 1lvmA 152 :GSPLVSTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=68329 # 1zhxA.321.118 read from T0547.t04.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)A327 (1zhxA)G121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1zhxA)K122 because Y (epsilon') conformation "forbidden" or filtered. T0547 321 :SGRFVA 1zhxA 115 :LGELFV T0547 329 :H 1zhxA 123 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=68331 # 1zedA.321.311 read from T0547.t04.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)G322 (1zedA)G313 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1zedA)R314 because G (3-10) conformation "forbidden" or filtered. T0547 321 :S 1zedA 312 :G T0547 324 :FVAANH 1zedA 315 :IDHGHH Number of specific fragments extracted= 2 number of extra gaps= 1 total=68333 # 1mdaH.321.325 read from T0547.t04.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)N328 (1mdaH)S333 because P (beta_P) conformation "forbidden" or filtered. T0547 321 :SGRFVAA 1mdaH 326 :ASDNYAN T0547 329 :H 1mdaH 334 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=68335 # 1zbxB.321.11 read from T0547.t04.many.frag # found chain 1zbxB in template set T0547 321 :SGRFVAANH 1zbxB 491 :SPRFLVADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=68336 # 1qlmA.321.169 read from T0547.t04.many.frag # found chain 1qlmA in template set T0547 321 :SGRFVAANH 1qlmA 170 :PTASIVGSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=68337 # 2basA.321.247 read from T0547.t04.many.frag # found chain 2basA in template set Warning: unaligning (T0547)G322 (2basA)G225 because P (beta_P) conformation "forbidden" or filtered. T0547 321 :S 2basA 224 :G T0547 323 :RFVAANH 2basA 226 :RYFQGYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=68339 # 1kuuA.321.2 read from T0547.t04.many.frag # found chain 1kuuA in template set T0547 321 :SGRFVAANH 1kuuA 3 :LGRILAVGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=68340 # 2bpa1.321.23 read from T0547.t04.many.frag # found chain 2bpa1 in template set T0547 321 :SGRFVAANH 2bpa1 24 :IGRLITIST Number of specific fragments extracted= 1 number of extra gaps= 0 total=68341 # 1ogoX.321.155 read from T0547.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0547)A327 (1ogoX)V162 because E (beta_S) conformation "forbidden" or filtered. T0547 321 :SGRFVA 1ogoX 156 :NGRKFS T0547 328 :NH 1ogoX 163 :EF Number of specific fragments extracted= 2 number of extra gaps= 1 total=68343 # 1zc6A.321.128 read from T0547.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)A326 (1zc6A)I134 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1zc6A)E136 because E (beta_S) conformation "forbidden" or filtered. T0547 321 :SGRFV 1zc6A 129 :LGTGS T0547 327 :A 1zc6A 135 :G T0547 329 :H 1zc6A 137 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=68346 # 1pzxA.321.264 read from T0547.t04.many.frag # found chain 1pzxA in template set T0547 321 :SGRFVAANH 1pzxA 263 :IGSAIGAHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68347 # 2bmoA.321.300 read from T0547.t04.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 321 :SGRFVAA 2bmoA 301 :NNSFLTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=68348 # 1m22A.321.185 read from T0547.t04.many.frag # found chain 1m22A in training set T0547 321 :SGRFVAANH 1m22A 223 :TDGSIVCPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68349 # 2fgqX.321.167 read from T0547.t04.many.frag # found chain 2fgqX in training set Warning: unaligning (T0547)A326 (2fgqX)G173 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (2fgqX)G174 because Y (epsilon') conformation "forbidden" or filtered. T0547 321 :SGRFV 2fgqX 168 :VGRYI T0547 328 :NH 2fgqX 175 :YV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68351 # 1uvjA.321.451 read from T0547.t04.many.frag # found chain 1uvjA in template set Warning: unaligning (T0547)S321 (1uvjA)S452 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1uvjA)G458 because E (beta_S) conformation "forbidden" or filtered. T0547 322 :GRFVA 1uvjA 453 :DDAML T0547 328 :NH 1uvjA 459 :WT Number of specific fragments extracted= 2 number of extra gaps= 2 total=68353 # 1knwA.322.269 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A330 (1knwA)G278 because E (beta_S) conformation "forbidden" or filtered. T0547 322 :GRFVAANH 1knwA 270 :GRFLVAQS Number of specific fragments extracted= 1 number of extra gaps= 1 total=68354 # 7odcA.322.275 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 322 :GRFVAANHA 7odcA 276 :GRYYVASAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=68355 # 1v0wA.322.167 read from T0547.t04.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)G322 (1v0wA)S171 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1v0wA)D177 because L (left) conformation "forbidden" or filtered. T0547 323 :RFVAA 1v0wA 172 :KILVV T0547 329 :HA 1v0wA 178 :GQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=68357 # 1svpA.322.110 read from T0547.t04.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)R323 (1svpA)R217 because P (beta_P) conformation "forbidden" or filtered. T0547 322 :G 1svpA 216 :G T0547 324 :FVAANHA 1svpA 218 :PIMDNSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=68359 # 1q7zA.322.405 read from T0547.t04.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)G322 (1q7zA)G406 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1q7zA)N411 because P (beta_P) conformation "forbidden" or filtered. T0547 323 :RFVA 1q7zA 407 :RSLF T0547 328 :NHA 1q7zA 412 :SAK Number of specific fragments extracted= 2 number of extra gaps= 2 total=68361 # 1pq7A.322.180 read from T0547.t04.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)F324 because of BadResidue code BAD_PEPTIDE in next template residue (1pq7A)I199 Warning: unaligning (T0547)V325 because of BadResidue code BAD_PEPTIDE at template residue (1pq7A)I199 T0547 322 :GR 1pq7A 196 :GG T0547 326 :AANHA 1pq7A 200 :VDSSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=68363 # 1zaiA.322.301 read from T0547.t04.many.frag # found chain 1zaiA in training set Warning: unaligning (T0547)G322 (1zaiA)G302 because H (helix) conformation "forbidden" or filtered. T0547 323 :RFVAANHA 1zaiA 303 :RALQASAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=68364 # 1fx2A.322.173 read from T0547.t04.many.frag # found chain 1fx2A in training set T0547 322 :GRFVAANHA 1fx2A 1061 :GQVLMTHAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68365 # 1s3eA.322.56 read from T0547.t04.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)F324 (1s3eA)S59 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1s3eA)P63 because P (beta_P) conformation "forbidden" or filtered. T0547 322 :GR 1s3eA 57 :GG T0547 325 :VAA 1s3eA 60 :YVG T0547 329 :HA 1s3eA 64 :TQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=68368 # 1k3xA.322.50 read from T0547.t04.many.frag # found chain 1k3xA in training set Warning: unaligning (T0547)A326 (1k3xA)L55 because D (zeta) conformation "forbidden" or filtered. T0547 322 :GRFV 1k3xA 51 :GKAL T0547 327 :ANHA 1k3xA 56 :THFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=68370 # 1tca.322.105 read from T0547.t04.many.frag # found chain 1tca in training set T0547 322 :GRFVAANHA 1tca 106 :QGGLVAQWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=68371 # 1zbxB.322.12 read from T0547.t04.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)N328 (1zbxB)D498 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1zbxB)G499 because T (delta_L) conformation "forbidden" or filtered. T0547 322 :GRFVAA 1zbxB 492 :PRFLVA T0547 330 :A 1zbxB 500 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=68373 # 1eybA.322.177 read from T0547.t04.many.frag # found chain 1eybA in template set Warning: unaligning (T0547)A327 (1eybA)V157 because D (zeta) conformation "forbidden" or filtered. T0547 322 :GRFVA 1eybA 152 :GDFLI T0547 328 :NHA 1eybA 158 :PQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=68375 # 1arb.322.194 read from T0547.t04.many.frag # found chain 1arb in training set T0547 322 :GRFVAANHA 1arb 195 :GSPIYSPEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=68376 # 1mdaH.322.326 read from T0547.t04.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)A327 (1mdaH)N332 because E (beta_S) conformation "forbidden" or filtered. T0547 322 :GRFVA 1mdaH 327 :SDNYA T0547 328 :NHA 1mdaH 333 :SAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=68378 # 1zhxA.322.221 read from T0547.t04.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)G322 (1zhxA)K218 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1zhxA)Q222 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1zhxA)T225 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1zhxA)G226 because T (delta_L) conformation "forbidden" or filtered. T0547 323 :RFV 1zhxA 219 :SYI T0547 327 :AN 1zhxA 223 :SS Number of specific fragments extracted= 2 number of extra gaps= 3 total=68380 # 2bmoA.322.301 read from T0547.t04.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 322 :GRFVAA 2bmoA 302 :NSFLTG T0547 330 :A 2bmoA 310 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=68382 # 1lvmA.322.159 read from T0547.t04.many.frag # found chain 1lvmA in training set T0547 322 :GRFVAANHA 1lvmA 152 :GSPLVSTRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=68383 # 1t9hA.322.224 read from T0547.t04.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)R323 (1t9hA)G217 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1t9hA)D221 because G (3-10) conformation "forbidden" or filtered. T0547 322 :G 1t9hA 216 :G T0547 324 :FVA 1t9hA 218 :LVA T0547 328 :NHA 1t9hA 222 :TPG Number of specific fragments extracted= 3 number of extra gaps= 2 total=68386 # 1ogoX.322.156 read from T0547.t04.many.frag # found chain 1ogoX in training set T0547 322 :GRFVAANHA 1ogoX 157 :GRKFSVEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=68387 # 1zhxA.322.119 read from T0547.t04.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)R323 (1zhxA)E117 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1zhxA)V120 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1zhxA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0547 322 :G 1zhxA 116 :G T0547 324 :FV 1zhxA 118 :LF T0547 328 :NHA 1zhxA 122 :KWE Number of specific fragments extracted= 3 number of extra gaps= 2 total=68390 # 2basA.322.248 read from T0547.t04.many.frag # found chain 2basA in template set Warning: unaligning (T0547)A327 (2basA)G230 because Y (epsilon') conformation "forbidden" or filtered. T0547 322 :GRFVA 2basA 225 :GRYFQ T0547 328 :NHA 2basA 231 :YYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68392 # 1pguA.322.384 read from T0547.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)A330 (1pguA)D393 because L (left) conformation "forbidden" or filtered. T0547 322 :GRFVAANH 1pguA 385 :EYSSISWD Number of specific fragments extracted= 1 number of extra gaps= 1 total=68393 # 1wckA.322.123 read from T0547.t04.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. T0547 322 :GRFVAANH 1wckA 124 :DTFVISET Number of specific fragments extracted= 1 number of extra gaps= 1 total=68394 # 1g3p.322.138 read from T0547.t04.many.frag # found chain 1g3p in training set Warning: unaligning (T0547)A327 (1g3p)R144 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1g3p)Q145 because L (left) conformation "forbidden" or filtered. T0547 322 :GRFVA 1g3p 139 :NRFRN T0547 329 :HA 1g3p 146 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=68396 # 1yqyA.322.259 read from T0547.t04.many.frag # found chain 1yqyA in template set Warning: unaligning (T0547)H329 (1yqyA)N524 because L (left) conformation "forbidden" or filtered. T0547 322 :GRFVAAN 1yqyA 517 :GKLILQR T0547 330 :A 1yqyA 525 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=68398 # 1j31A.322.207 read from T0547.t04.many.frag # found chain 1j31A in training set Warning: unaligning (T0547)R323 (1j31A)K209 because L (left) conformation "forbidden" or filtered. T0547 322 :G 1j31A 208 :G T0547 324 :FVAANHA 1j31A 210 :SLIASPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=68400 # 2bmoA.322.300 read from T0547.t04.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 322 :GRFVAAN 2bmoA 301 :NNSFLTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=68401 # 1kuuA.322.3 read from T0547.t04.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)N328 (1kuuA)G10 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1kuuA)N12 because Y (epsilon') conformation "forbidden" or filtered. T0547 322 :GRFVAA 1kuuA 4 :GRILAV T0547 329 :H 1kuuA 11 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=68403 # 1qlmA.322.170 read from T0547.t04.many.frag # found chain 1qlmA in template set T0547 322 :GRFVAANHA 1qlmA 171 :TASIVGSVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=68404 # 7odcA.323.276 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 323 :RFVAANHAV 7odcA 277 :RYYVASAFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=68405 # 1knwA.323.270 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 323 :RFVAANHAV 1knwA 271 :RFLVAQSGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=68406 # 1v0wA.323.168 read from T0547.t04.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)N328 (1v0wA)D177 because L (left) conformation "forbidden" or filtered. T0547 323 :RFVAA 1v0wA 172 :KILVV T0547 329 :HAV 1v0wA 178 :GQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=68408 # 1svpA.323.111 read from T0547.t04.many.frag # found chain 1svpA in template set T0547 323 :RFVAANHAV 1svpA 217 :RPIMDNSGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=68409 # 1pq7A.323.181 read from T0547.t04.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)F324 because of BadResidue code BAD_PEPTIDE in next template residue (1pq7A)I199 Warning: unaligning (T0547)V325 because of BadResidue code BAD_PEPTIDE at template residue (1pq7A)I199 T0547 323 :R 1pq7A 197 :G T0547 326 :AANHAV 1pq7A 200 :VDSSNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=68411 # 1q7zA.323.406 read from T0547.t04.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)N328 (1q7zA)S412 because S (epsilon) conformation "forbidden" or filtered. T0547 323 :RFVAA 1q7zA 407 :RSLFN T0547 329 :HAV 1q7zA 413 :AKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68413 # 1mdaH.323.327 read from T0547.t04.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)V331 (1mdaH)T336 because G (3-10) conformation "forbidden" or filtered. T0547 323 :RFVAANHA 1mdaH 328 :DNYANSAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=68414 # 1fx2A.323.174 read from T0547.t04.many.frag # found chain 1fx2A in training set T0547 323 :RFVAANHAV 1fx2A 1062 :QVLMTHAAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=68415 # 1wckA.323.124 read from T0547.t04.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)N328 (1wckA)E130 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. T0547 323 :RFVAA 1wckA 125 :TFVIS T0547 329 :H 1wckA 131 :T T0547 331 :V 1wckA 133 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=68418 # 1s3eA.323.57 read from T0547.t04.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)A327 (1s3eA)G62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1s3eA)T64 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1s3eA)Q65 because N (gamma') conformation "forbidden" or filtered. T0547 323 :RFVA 1s3eA 58 :GSYV T0547 328 :N 1s3eA 63 :P T0547 331 :V 1s3eA 66 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=68421 # 1tca.323.106 read from T0547.t04.many.frag # found chain 1tca in training set T0547 323 :RFVAANHAV 1tca 107 :GGLVAQWGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=68422 # 1k3xA.323.51 read from T0547.t04.many.frag # found chain 1k3xA in training set Warning: unaligning (T0547)A326 (1k3xA)L55 because D (zeta) conformation "forbidden" or filtered. T0547 323 :RFV 1k3xA 52 :KAL T0547 327 :ANHAV 1k3xA 56 :THFSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=68424 # 1zaiA.323.302 read from T0547.t04.many.frag # found chain 1zaiA in training set T0547 323 :RFVAANHAV 1zaiA 303 :RALQASALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=68425 # 1zhxA.323.222 read from T0547.t04.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)H329 (1zhxA)T225 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1zhxA)G226 because T (delta_L) conformation "forbidden" or filtered. T0547 323 :RFVAAN 1zhxA 219 :SYIQSS T0547 331 :V 1zhxA 227 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=68427 # 1zbxB.323.13 read from T0547.t04.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)N328 (1zbxB)D498 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1zbxB)G499 because T (delta_L) conformation "forbidden" or filtered. T0547 323 :RFVAA 1zbxB 493 :RFLVA T0547 330 :AV 1zbxB 500 :FL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68429 # 1arb.323.195 read from T0547.t04.many.frag # found chain 1arb in training set Warning: unaligning (T0547)A330 (1arb)K203 because L (left) conformation "forbidden" or filtered. T0547 323 :RFVAANH 1arb 196 :SPIYSPE T0547 331 :V 1arb 204 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=68431 # 1pguA.323.385 read from T0547.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)A326 (1pguA)I389 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1pguA)D393 because L (left) conformation "forbidden" or filtered. T0547 323 :RFV 1pguA 386 :YSS T0547 327 :ANH 1pguA 390 :SWD T0547 331 :V 1pguA 394 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=68434 # 1eybA.323.178 read from T0547.t04.many.frag # found chain 1eybA in template set Warning: unaligning (T0547)N328 (1eybA)P158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1eybA)K160 because E (beta_S) conformation "forbidden" or filtered. T0547 323 :RFVAA 1eybA 153 :DFLIV T0547 329 :H 1eybA 159 :Q T0547 331 :V 1eybA 161 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=68437 # 1ogoX.323.157 read from T0547.t04.many.frag # found chain 1ogoX in training set T0547 323 :RFVAANHAV 1ogoX 158 :RKFSVEFKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=68438 # 2bmoA.323.302 read from T0547.t04.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 323 :RFVAA 2bmoA 303 :SFLTG T0547 330 :AV 2bmoA 310 :AF Number of specific fragments extracted= 2 number of extra gaps= 1 total=68440 # 1u8xX.323.218 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)R323 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)R196 Warning: unaligning (T0547)A327 (1u8xX)L200 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1u8xX)N201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1u8xX)H202 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. T0547 324 :FVA 1u8xX 197 :YYG T0547 331 :V 1u8xX 204 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=68442 # 1lvmA.323.160 read from T0547.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0547)V331 (1lvmA)G161 because T (delta_L) conformation "forbidden" or filtered. T0547 323 :RFVAANHA 1lvmA 153 :SPLVSTRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=68443 # 1pbyB.323.253 read from T0547.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0547)N328 (1pbyB)Y259 because Y (epsilon') conformation "forbidden" or filtered. T0547 323 :RFVAA 1pbyB 254 :RAFGA T0547 329 :HAV 1pbyB 260 :NVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68445 # 1a12A.323.114 read from T0547.t04.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)R323 (1a12A)Q123 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1a12A)H130 because E (beta_S) conformation "forbidden" or filtered. T0547 324 :FVAANH 1a12A 124 :VSAGDS T0547 331 :V 1a12A 131 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=68447 # 1t9hA.323.225 read from T0547.t04.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)V331 (1t9hA)F225 because L (left) conformation "forbidden" or filtered. T0547 323 :RFVAANHA 1t9hA 217 :GLVADTPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=68448 # 1olzA.323.40 read from T0547.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)H329 (1olzA)E47 because T (delta_L) conformation "forbidden" or filtered. T0547 323 :RFVAAN 1olzA 41 :LYIGAR T0547 330 :AV 1olzA 48 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68450 # 1ylhA.323.282 read from T0547.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)A327 (1ylhA)G267 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1ylhA)D268 because G (3-10) conformation "forbidden" or filtered. T0547 323 :RFVA 1ylhA 263 :RQLI T0547 329 :HAV 1ylhA 269 :DEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=68452 # 1j31A.323.208 read from T0547.t04.many.frag # found chain 1j31A in training set Warning: unaligning (T0547)R323 (1j31A)K209 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1j31A)S214 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 (1j31A)A217 because L (left) conformation "forbidden" or filtered. T0547 324 :FVAA 1j31A 210 :SLIA T0547 329 :HA 1j31A 215 :PK Number of specific fragments extracted= 2 number of extra gaps= 3 total=68454 # 1xipA.323.98 read from T0547.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)A330 (1xipA)N105 because G (3-10) conformation "forbidden" or filtered. T0547 323 :RFVAANH 1xipA 98 :QVLVSTR T0547 331 :V 1xipA 106 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=68456 # 1mtpA.323.152 read from T0547.t04.many.frag # found chain 1mtpA in training set Warning: unaligning (T0547)R323 (1mtpA)R155 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1mtpA)A156 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VAANHAV 1mtpA 157 :ILTNALW Number of specific fragments extracted= 1 number of extra gaps= 1 total=68457 # 7odcA.324.277 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 324 :FVAANHAVL 7odcA 278 :YYVASAFTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=68458 # 1knwA.324.271 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 324 :FVAANHAVL 1knwA 272 :FLVAQSGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=68459 # 1v0wA.324.169 read from T0547.t04.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)N328 (1v0wA)D177 because L (left) conformation "forbidden" or filtered. T0547 324 :FVAA 1v0wA 173 :ILVV T0547 329 :HAVL 1v0wA 178 :GQSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=68461 # 1mdaH.324.328 read from T0547.t04.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)L332 (1mdaH)E337 because L (left) conformation "forbidden" or filtered. T0547 324 :FVAANHAV 1mdaH 329 :NYANSAGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=68462 # 1svpA.324.112 read from T0547.t04.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)A330 (1svpA)G224 because T (delta_L) conformation "forbidden" or filtered. T0547 324 :FVAANH 1svpA 218 :PIMDNS T0547 331 :VL 1svpA 225 :RV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68464 # 1wckA.324.125 read from T0547.t04.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FVAANH 1wckA 126 :FVISET T0547 331 :VL 1wckA 133 :FY Number of specific fragments extracted= 2 number of extra gaps= 1 total=68466 # 1tca.324.107 read from T0547.t04.many.frag # found chain 1tca in training set T0547 324 :FVAANHAVL 1tca 108 :GLVAQWGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=68467 # 1pq7A.324.182 read from T0547.t04.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)F324 because of BadResidue code BAD_PEPTIDE in next template residue (1pq7A)I199 Warning: unaligning (T0547)V325 because of BadResidue code BAD_PEPTIDE at template residue (1pq7A)I199 Warning: unaligning (T0547)A330 (1pq7A)N204 because T (delta_L) conformation "forbidden" or filtered. T0547 326 :AANH 1pq7A 200 :VDSS T0547 331 :VL 1pq7A 205 :TL Number of specific fragments extracted= 2 number of extra gaps= 2 total=68469 # 1u8xX.324.219 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)A326 (1u8xX)G199 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FV 1u8xX 197 :YY T0547 327 :ANHAVL 1u8xX 200 :LNHFGW Number of specific fragments extracted= 2 number of extra gaps= 1 total=68471 # 1ogoX.324.158 read from T0547.t04.many.frag # found chain 1ogoX in training set T0547 324 :FVAANHAVL 1ogoX 159 :KFSVEFKTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=68472 # 1q7zA.324.407 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 324 :FVAANHAVL 1q7zA 408 :SLFNSAKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=68473 # 1pguA.324.386 read from T0547.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)A330 (1pguA)D393 because L (left) conformation "forbidden" or filtered. T0547 324 :FVAANH 1pguA 387 :SSISWD T0547 331 :VL 1pguA 394 :TL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68475 # 1s3eA.324.58 read from T0547.t04.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)A327 (1s3eA)G62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1s3eA)T64 because T (delta_L) conformation "forbidden" or filtered. T0547 324 :FVA 1s3eA 59 :SYV T0547 328 :N 1s3eA 63 :P T0547 330 :AVL 1s3eA 65 :QNR Number of specific fragments extracted= 3 number of extra gaps= 2 total=68478 # 1zhxA.324.223 read from T0547.t04.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)A330 (1zhxA)G226 because T (delta_L) conformation "forbidden" or filtered. T0547 324 :FVAANH 1zhxA 220 :YIQSST T0547 331 :VL 1zhxA 227 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68480 # 2bmoA.324.303 read from T0547.t04.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)A327 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 324 :FVA 2bmoA 304 :FLT T0547 330 :AVL 2bmoA 310 :AFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=68482 # 1arb.324.196 read from T0547.t04.many.frag # found chain 1arb in training set Warning: unaligning (T0547)A330 (1arb)K203 because L (left) conformation "forbidden" or filtered. T0547 324 :FVAANH 1arb 197 :PIYSPE T0547 331 :VL 1arb 204 :RV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68484 # 1fx2A.324.175 read from T0547.t04.many.frag # found chain 1fx2A in training set T0547 324 :FVAANHAVL 1fx2A 1063 :VLMTHAAYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=68485 # 1oewA.324.82 read from T0547.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)A326 (1oewA)S85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1oewA)G86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1oewA)T90 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1oewA)T90 T0547 324 :FV 1oewA 83 :SS T0547 328 :NH 1oewA 87 :DV T0547 332 :L 1oewA 91 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=68488 # 1olzA.324.41 read from T0547.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)A327 (1olzA)A45 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1olzA)R46 because P (beta_P) conformation "forbidden" or filtered. T0547 324 :FVA 1olzA 42 :YIG T0547 329 :HAVL 1olzA 47 :EAVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=68490 # 1b43A.324.175 read from T0547.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0547)N328 (1b43A)G179 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1b43A)A180 because P (beta_P) conformation "forbidden" or filtered. T0547 324 :FVAA 1b43A 175 :SLLF T0547 330 :AVL 1b43A 181 :PRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68492 # 1zaiA.324.303 read from T0547.t04.many.frag # found chain 1zaiA in training set T0547 324 :FVAANHAVL 1zaiA 304 :ALQASALKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68493 # 1k3xA.324.52 read from T0547.t04.many.frag # found chain 1k3xA in training set Warning: unaligning (T0547)A326 (1k3xA)L55 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1k3xA)T56 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1k3xA)D61 because T (delta_L) conformation "forbidden" or filtered. T0547 324 :FV 1k3xA 53 :AL T0547 328 :NHAV 1k3xA 57 :HFSN Number of specific fragments extracted= 2 number of extra gaps= 2 total=68495 # 1vjuA.324.61 read from T0547.t04.many.frag # found chain 1vjuA in training set T0547 324 :FVAANHAVL 1vjuA 62 :AVIEKGGVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=68496 # 1rloA.324.62 read from T0547.t04.many.frag # found chain 1rloA in template set Warning: unaligning (T0547)A326 (1rloA)V65 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1rloA)E67 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1rloA)N68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1rloA)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 324 :FV 1rloA 63 :SF T0547 327 :A 1rloA 66 :A T0547 331 :VL 1rloA 70 :AL Number of specific fragments extracted= 3 number of extra gaps= 2 total=68499 # 1pbyB.324.254 read from T0547.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0547)N328 (1pbyB)Y259 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1pbyB)N260 because G (3-10) conformation "forbidden" or filtered. T0547 324 :FVAA 1pbyB 255 :AFGA T0547 330 :AVL 1pbyB 261 :VLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=68501 # 1a12A.324.115 read from T0547.t04.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)A327 (1a12A)G127 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1a12A)H130 because E (beta_S) conformation "forbidden" or filtered. T0547 324 :FVA 1a12A 124 :VSA T0547 328 :NH 1a12A 128 :DS T0547 331 :VL 1a12A 131 :TA Number of specific fragments extracted= 3 number of extra gaps= 2 total=68504 # 1jr7A.324.267 read from T0547.t04.many.frag # found chain 1jr7A in template set Warning: unaligning (T0547)A326 (1jr7A)L284 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1jr7A)I285 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 (1jr7A)F289 because G (3-10) conformation "forbidden" or filtered. T0547 324 :FV 1jr7A 282 :FL T0547 328 :NHA 1jr7A 286 :NNL T0547 332 :L 1jr7A 290 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=68507 # 1mtpA.324.153 read from T0547.t04.many.frag # found chain 1mtpA in training set Warning: unaligning (T0547)N328 (1mtpA)N160 because E (beta_S) conformation "forbidden" or filtered. T0547 324 :FVAA 1mtpA 156 :AILT T0547 329 :HAVL 1mtpA 161 :ALWA Number of specific fragments extracted= 2 number of extra gaps= 1 total=68509 # 1zbxB.324.14 read from T0547.t04.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)H329 (1zbxB)G499 because T (delta_L) conformation "forbidden" or filtered. T0547 324 :FVAAN 1zbxB 494 :FLVAD T0547 330 :AVL 1zbxB 500 :FLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=68511 # 2c5qA.324.43 read from T0547.t04.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)A327 (2c5qA)G47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (2c5qA)T48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (2c5qA)Y50 because D (zeta) conformation "forbidden" or filtered. T0547 324 :FVA 2c5qA 44 :SIV T0547 329 :H 2c5qA 49 :A T0547 331 :VL 2c5qA 51 :TV Number of specific fragments extracted= 3 number of extra gaps= 2 total=68514 # 1knwA.325.272 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 325 :VAANHAVLI 1knwA 273 :LVAQSGVLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=68515 # 7odcA.325.278 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 325 :VAANHAVLI 7odcA 279 :YVASAFTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68516 # 1mdaH.325.329 read from T0547.t04.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)L332 (1mdaH)E337 because L (left) conformation "forbidden" or filtered. T0547 325 :VAANHAV 1mdaH 330 :YANSAGT T0547 333 :I 1mdaH 338 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=68518 # 1wckA.325.126 read from T0547.t04.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VAANH 1wckA 127 :VISET T0547 331 :VLI 1wckA 133 :FYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=68520 # 1v0wA.325.170 read from T0547.t04.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)N328 (1v0wA)D177 because L (left) conformation "forbidden" or filtered. T0547 325 :VAA 1v0wA 174 :LVV T0547 329 :HAVLI 1v0wA 178 :GQSAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68522 # 1u8xX.325.220 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. T0547 325 :VAANH 1u8xX 198 :YGLNH T0547 331 :VLI 1u8xX 204 :GWW Number of specific fragments extracted= 2 number of extra gaps= 1 total=68524 # 1tca.325.108 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)I333 (1tca)F117 because G (3-10) conformation "forbidden" or filtered. T0547 325 :VAANHAVL 1tca 109 :LVAQWGLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=68525 # 2bmoA.325.304 read from T0547.t04.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)A327 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 325 :VA 2bmoA 305 :LT T0547 330 :AVLI 2bmoA 310 :AFRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68527 # 1uc2A.325.198 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)V325 (1uc2A)G199 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1uc2A)G201 because S (epsilon) conformation "forbidden" or filtered. T0547 326 :A 1uc2A 200 :S T0547 328 :NHAVLI 1uc2A 202 :NHFLEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=68529 # 1ogoX.325.159 read from T0547.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0547)A326 (1ogoX)S161 because E (beta_S) conformation "forbidden" or filtered. T0547 325 :V 1ogoX 160 :F T0547 327 :ANHAVLI 1ogoX 162 :VEFKTDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68531 # 1pguA.325.387 read from T0547.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)A330 (1pguA)D393 because L (left) conformation "forbidden" or filtered. T0547 325 :VAANH 1pguA 388 :SISWD T0547 331 :VLI 1pguA 394 :TLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=68533 # 2bvcA.325.137 read from T0547.t04.many.frag # found chain 2bvcA in template set T0547 325 :VAANHAVLI 2bvcA 130 :FGAEAEFYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=68534 # 1oewA.325.83 read from T0547.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)A326 (1oewA)S85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1oewA)G86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1oewA)T90 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1oewA)T90 T0547 325 :V 1oewA 84 :S T0547 328 :NH 1oewA 87 :DV T0547 332 :LI 1oewA 91 :DT Number of specific fragments extracted= 3 number of extra gaps= 2 total=68537 # 1a12A.325.116 read from T0547.t04.many.frag # found chain 1a12A in training set T0547 325 :VAANHAVLI 1a12A 125 :SAGDSHTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68538 # 1s3eA.325.59 read from T0547.t04.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)A327 (1s3eA)G62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1s3eA)Q65 because N (gamma') conformation "forbidden" or filtered. T0547 325 :VA 1s3eA 60 :YV T0547 328 :NH 1s3eA 63 :PT T0547 331 :VLI 1s3eA 66 :NRI Number of specific fragments extracted= 3 number of extra gaps= 2 total=68541 # 1xdnA.325.152 read from T0547.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)A326 (1xdnA)S201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1xdnA)H205 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :V 1xdnA 200 :Y T0547 327 :ANH 1xdnA 202 :PEL T0547 331 :VLI 1xdnA 206 :FFA Number of specific fragments extracted= 3 number of extra gaps= 2 total=68544 # 1olzA.325.42 read from T0547.t04.many.frag # found chain 1olzA in template set T0547 325 :VAANHAVLI 1olzA 43 :IGAREAVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68545 # 1svpA.325.113 read from T0547.t04.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)A327 (1svpA)D221 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1svpA)G224 because T (delta_L) conformation "forbidden" or filtered. T0547 325 :VA 1svpA 219 :IM T0547 328 :NH 1svpA 222 :NS T0547 331 :VLI 1svpA 225 :RVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=68548 # 1vjuA.325.62 read from T0547.t04.many.frag # found chain 1vjuA in training set T0547 325 :VAANHAVLI 1vjuA 63 :VIEKGGVNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=68549 # 1jr7A.325.268 read from T0547.t04.many.frag # found chain 1jr7A in template set T0547 325 :VAANHAVLI 1jr7A 283 :LLINNLFWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=68550 # 1b43A.325.176 read from T0547.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0547)N328 (1b43A)G179 because T (delta_L) conformation "forbidden" or filtered. T0547 325 :VAA 1b43A 176 :LLF T0547 329 :HAVLI 1b43A 180 :APRLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68552 # 1mtpA.325.154 read from T0547.t04.many.frag # found chain 1mtpA in training set Warning: unaligning (T0547)N328 (1mtpA)N160 because E (beta_S) conformation "forbidden" or filtered. T0547 325 :VAA 1mtpA 157 :ILT T0547 329 :HAVLI 1mtpA 161 :ALWAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=68554 # 1fx2A.325.176 read from T0547.t04.many.frag # found chain 1fx2A in training set T0547 325 :VAANHAVLI 1fx2A 1064 :LMTHAAYMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=68555 # 1f9vA.325.213 read from T0547.t04.many.frag # found chain 1f9vA in training set T0547 325 :VAANHAVLI 1f9vA 596 :SSASHSIFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=68556 # 1rloA.325.63 read from T0547.t04.many.frag # found chain 1rloA in template set Warning: unaligning (T0547)N328 (1rloA)E67 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1rloA)N68 because L (left) conformation "forbidden" or filtered. T0547 325 :VAA 1rloA 64 :FVA T0547 330 :AVLI 1rloA 69 :GALV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68558 # 1ecrA.325.26 read from T0547.t04.many.frag # found chain 1ecrA in template set T0547 325 :VAANHAVLI 1ecrA 27 :HLEQHKLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=68559 # 1h2cA.325.13 read from T0547.t04.many.frag # found chain 1h2cA in training set Warning: unaligning (T0547)A326 because first residue in template chain is (1h2cA)V69 Warning: unaligning (T0547)A327 (1h2cA)S70 because P (beta_P) conformation "forbidden" or filtered. T0547 328 :NHAVLI 1h2cA 71 :SAFILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=68560 # 1pbyB.325.255 read from T0547.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0547)N328 (1pbyB)Y259 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VAA 1pbyB 256 :FGA T0547 329 :HAVLI 1pbyB 260 :NVLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=68562 # 1pq7A.325.183 read from T0547.t04.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)V325 because of BadResidue code BAD_PEPTIDE at template residue (1pq7A)I199 T0547 326 :AANHAVLI 1pq7A 200 :VDSSNTLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=68563 # 1o9wA.325.116 read from T0547.t04.many.frag # found chain 1o9wA in template set Warning: unaligning (T0547)N328 (1o9wA)G120 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1o9wA)L121 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VAA 1o9wA 117 :STQ T0547 330 :AVLI 1o9wA 122 :SVRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68565 # 1knwA.326.273 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 326 :AANHAVLIA 1knwA 274 :VAQSGVLIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=68566 # 7odcA.326.279 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 326 :AANHAVLIA 7odcA 280 :VASAFTLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=68567 # 1wckA.326.127 read from T0547.t04.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)H329 (1wckA)T131 because P (beta_P) conformation "forbidden" or filtered. T0547 326 :AAN 1wckA 128 :ISE T0547 330 :AVLIA 1wckA 132 :GFYKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=68569 # 1mdaH.326.330 read from T0547.t04.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)V331 (1mdaH)T336 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1mdaH)E337 because L (left) conformation "forbidden" or filtered. T0547 326 :AANHA 1mdaH 331 :ANSAG T0547 333 :IA 1mdaH 338 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68571 # 2bvcA.326.138 read from T0547.t04.many.frag # found chain 2bvcA in template set Warning: unaligning (T0547)A334 (2bvcA)F139 because P (beta_P) conformation "forbidden" or filtered. T0547 326 :AANHAVLI 2bvcA 131 :GAEAEFYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=68572 # 1u8xX.326.221 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)A326 (1u8xX)G199 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. T0547 327 :ANH 1u8xX 200 :LNH T0547 331 :VLIA 1u8xX 204 :GWWT Number of specific fragments extracted= 2 number of extra gaps= 2 total=68574 # 1ecrA.326.27 read from T0547.t04.many.frag # found chain 1ecrA in template set T0547 326 :AANHAVLIA 1ecrA 28 :LEQHKLLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=68575 # 1v0wA.326.171 read from T0547.t04.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)A326 (1v0wA)V175 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1v0wA)G178 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1v0wA)T183 because Y (epsilon') conformation "forbidden" or filtered. T0547 327 :AN 1v0wA 176 :VD T0547 330 :AVLI 1v0wA 179 :QSAL Number of specific fragments extracted= 2 number of extra gaps= 3 total=68577 # 1n7zA.326.122 read from T0547.t04.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)A326 (1n7zA)E123 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1n7zA)G125 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1n7zA)Y131 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :A 1n7zA 124 :S T0547 329 :HAVLI 1n7zA 126 :AGWLV Number of specific fragments extracted= 2 number of extra gaps= 3 total=68579 # 1uc2A.326.199 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)A330 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :AANH 1uc2A 200 :SGNH T0547 331 :VLIA 1uc2A 205 :LEVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=68581 # 1pguA.326.388 read from T0547.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)A330 (1pguA)D393 because L (left) conformation "forbidden" or filtered. T0547 326 :AANH 1pguA 389 :ISWD T0547 331 :VLIA 1pguA 394 :TLKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68583 # 2bmoA.326.305 read from T0547.t04.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)A327 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 326 :A 2bmoA 306 :T T0547 330 :AVLIA 2bmoA 310 :AFRVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=68585 # 1xdnA.326.153 read from T0547.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)A326 (1xdnA)S201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1xdnA)E203 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1xdnA)L204 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1xdnA)H205 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1xdnA)F209 because G (3-10) conformation "forbidden" or filtered. T0547 327 :A 1xdnA 202 :P T0547 331 :VLI 1xdnA 206 :FFA Number of specific fragments extracted= 2 number of extra gaps= 3 total=68587 # 1svpA.326.114 read from T0547.t04.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)A330 (1svpA)G224 because T (delta_L) conformation "forbidden" or filtered. T0547 326 :AANH 1svpA 220 :MDNS T0547 331 :VLIA 1svpA 225 :RVVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=68589 # 1f9vA.326.214 read from T0547.t04.many.frag # found chain 1f9vA in training set T0547 326 :AANHAVLIA 1f9vA 597 :SASHSIFII Number of specific fragments extracted= 1 number of extra gaps= 0 total=68590 # 1rcqA.326.228 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A326 (1rcqA)L229 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1rcqA)P231 because P (beta_P) conformation "forbidden" or filtered. T0547 327 :A 1rcqA 230 :R T0547 329 :HAVLIA 1rcqA 232 :VMTLES Number of specific fragments extracted= 2 number of extra gaps= 2 total=68592 # 1tca.326.109 read from T0547.t04.many.frag # found chain 1tca in training set Warning: unaligning (T0547)A334 (1tca)F118 because D (zeta) conformation "forbidden" or filtered. T0547 326 :AANHAVLI 1tca 110 :VAQWGLTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=68593 # 1xjvA.326.152 read from T0547.t04.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A327 (1xjvA)M159 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1xjvA)Q160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1xjvA)F162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :A 1xjvA 158 :P T0547 329 :H 1xjvA 161 :Y T0547 331 :VLI 1xjvA 163 :DLT Number of specific fragments extracted= 3 number of extra gaps= 3 total=68596 # 2yhx.326.69 read from T0547.t04.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)A327 (2yhx)G72 because T (delta_L) conformation "forbidden" or filtered. T0547 326 :A 2yhx 71 :G T0547 328 :NHAVLIA 2yhx 73 :DLEVILI Number of specific fragments extracted= 2 number of extra gaps= 1 total=68598 # 1b43A.326.177 read from T0547.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0547)N328 (1b43A)G179 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1b43A)R185 because E (beta_S) conformation "forbidden" or filtered. T0547 326 :AA 1b43A 177 :LF T0547 329 :HAVLI 1b43A 180 :APRLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=68600 # 1a12A.326.117 read from T0547.t04.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)A327 (1a12A)G127 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :A 1a12A 126 :A T0547 328 :NHAVLIA 1a12A 128 :DSHTAAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68602 # 1oewA.326.84 read from T0547.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)A326 (1oewA)S85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1oewA)G86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1oewA)T90 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1oewA)T90 Warning: unaligning (T0547)L332 (1oewA)D91 because Y (epsilon') conformation "forbidden" or filtered. T0547 328 :NH 1oewA 87 :DV T0547 333 :IA 1oewA 92 :TV Number of specific fragments extracted= 2 number of extra gaps= 2 total=68604 # 1uadC.326.53 read from T0547.t04.many.frag # found chain 1uadC in template set Warning: unaligning (T0547)A326 (1uadC)W54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1uadC)S56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1uadC)C62 because Y (epsilon') conformation "forbidden" or filtered. T0547 327 :A 1uadC 55 :M T0547 329 :HAVLI 1uadC 57 :ASKIV Number of specific fragments extracted= 2 number of extra gaps= 3 total=68606 # 1olzA.326.43 read from T0547.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)H329 (1olzA)E47 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1olzA)A48 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1olzA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 326 :AAN 1olzA 44 :GAR T0547 331 :VLI 1olzA 49 :VFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=68608 # 1l1oC.326.22 read from T0547.t04.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)A327 (1l1oC)P459 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1l1oC)D460 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1l1oC)F462 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1l1oC)S464 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :A 1l1oC 458 :K T0547 329 :H 1l1oC 461 :Y T0547 331 :V 1l1oC 463 :S T0547 333 :IA 1l1oC 465 :VA Number of specific fragments extracted= 4 number of extra gaps= 3 total=68612 # 3sil.326.179 read from T0547.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0547)A330 (3sil)G187 because T (delta_L) conformation "forbidden" or filtered. T0547 326 :AANH 3sil 183 :QLND T0547 331 :VLIA 3sil 188 :KLVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=68614 # 2ae0X.326.264 read from T0547.t04.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)H329 (2ae0X)G268 because T (delta_L) conformation "forbidden" or filtered. T0547 326 :AAN 2ae0X 265 :IPP T0547 330 :AVLIA 2ae0X 269 :TTLLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=68616 # 1zn6A.326.101 read from T0547.t04.many.frag # found chain 1zn6A in training set Warning: unaligning (T0547)A330 (1zn6A)C106 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :AANH 1zn6A 102 :KAQH T0547 331 :VLIA 1zn6A 107 :IIPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=68618 # 1vjuA.326.63 read from T0547.t04.many.frag # found chain 1vjuA in training set T0547 326 :AANHAVLIA 1vjuA 64 :IEKGGVNFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=68619 # 1pq7A.326.184 read from T0547.t04.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)A334 (1pq7A)G208 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :AANHAVLI 1pq7A 200 :VDSSNTLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=68620 # 1knwA.327.274 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 327 :ANHAVLIAP 1knwA 275 :AQSGVLITQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=68621 # 7odcA.327.280 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 327 :ANHAVLIAP 7odcA 281 :ASAFTLAVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=68622 # 1wckA.327.128 read from T0547.t04.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANH 1wckA 129 :SET T0547 331 :VLIA 1wckA 133 :FYKI Number of specific fragments extracted= 2 number of extra gaps= 2 total=68624 # 1n7zA.327.123 read from T0547.t04.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)N328 (1n7zA)G125 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :A 1n7zA 124 :S T0547 329 :HAVLIA 1n7zA 126 :AGWLVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=68626 # 2bvcA.327.139 read from T0547.t04.many.frag # found chain 2bvcA in template set T0547 327 :ANHAVLIAP 2bvcA 132 :AEAEFYIFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=68627 # 1rcqA.327.229 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVLI 1rcqA 230 :RPVMTLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=68628 # 1ecrA.327.28 read from T0547.t04.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)P335 (1ecrA)R37 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVLIA 1ecrA 29 :EQHKLLVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=68629 # 1xjvA.327.153 read from T0547.t04.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A327 (1xjvA)M159 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1xjvA)F162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1xjvA 160 :QY T0547 331 :VLI 1xjvA 163 :DLT Number of specific fragments extracted= 2 number of extra gaps= 3 total=68631 # 1uadC.327.54 read from T0547.t04.many.frag # found chain 1uadC in template set Warning: unaligning (T0547)N328 (1uadC)S56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uadC)R63 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :A 1uadC 55 :M T0547 329 :HAVLIA 1uadC 57 :ASKIVC Number of specific fragments extracted= 2 number of extra gaps= 2 total=68633 # 1mdaH.327.331 read from T0547.t04.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)L332 (1mdaH)E337 because L (left) conformation "forbidden" or filtered. T0547 327 :ANHAV 1mdaH 332 :NSAGT T0547 333 :IAP 1mdaH 338 :VLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=68635 # 1l1oC.327.23 read from T0547.t04.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)A327 (1l1oC)P459 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1l1oC)F462 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1l1oC)S464 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1l1oC 460 :DY T0547 331 :V 1l1oC 463 :S T0547 333 :IA 1l1oC 465 :VA Number of specific fragments extracted= 3 number of extra gaps= 4 total=68638 # 1u8xX.327.222 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANH 1u8xX 200 :LNH T0547 331 :VLIA 1u8xX 204 :GWWT Number of specific fragments extracted= 2 number of extra gaps= 2 total=68640 # 1pguA.327.389 read from T0547.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)P335 (1pguA)N398 because L (left) conformation "forbidden" or filtered. T0547 327 :ANHAVLIA 1pguA 390 :SWDDTLKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=68641 # 3sil.327.180 read from T0547.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0547)A330 (3sil)G187 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (3sil)F191 because P (beta_P) conformation "forbidden" or filtered. T0547 327 :ANH 3sil 184 :LND T0547 331 :VLI 3sil 188 :KLV T0547 335 :P 3sil 192 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=68644 1bywA expands to /projects/compbio/data/pdb/1byw.pdb.gz 1bywA:# 1bywA.327.77 read from T0547.t04.many.frag # adding 1bywA to template set # found chain 1bywA in template set Warning: unaligning (T0547)P335 (1bywA)D111 because D (zeta) conformation "forbidden" or filtered. T0547 327 :ANHAVLIA 1bywA 103 :GSCFLCLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=68645 # 2yhx.327.70 read from T0547.t04.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)A327 (2yhx)G72 because T (delta_L) conformation "forbidden" or filtered. T0547 328 :NHAVLIAP 2yhx 73 :DLEVILIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=68646 # 1uc2A.327.200 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)H329 (1uc2A)H203 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uc2A)V209 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :AN 1uc2A 201 :GN T0547 331 :VLIA 1uc2A 205 :LEVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=68648 # 1b43A.327.178 read from T0547.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0547)N328 (1b43A)G179 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1b43A)N186 because T (delta_L) conformation "forbidden" or filtered. T0547 327 :A 1b43A 178 :F T0547 329 :HAVLIA 1b43A 180 :APRLVR Number of specific fragments extracted= 2 number of extra gaps= 2 total=68650 # 1v0wA.327.172 read from T0547.t04.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)N328 (1v0wA)D177 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1v0wA)G178 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1v0wA)T183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1v0wA)G184 because Y (epsilon') conformation "forbidden" or filtered. T0547 327 :A 1v0wA 176 :V T0547 330 :AVLI 1v0wA 179 :QSAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=68652 # 2ae0X.327.265 read from T0547.t04.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)H329 (2ae0X)G268 because T (delta_L) conformation "forbidden" or filtered. T0547 327 :AN 2ae0X 266 :PP T0547 330 :AVLIAP 2ae0X 269 :TTLLAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=68654 # 1oewA.327.85 read from T0547.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)A327 (1oewA)G86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1oewA)T90 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1oewA)T90 Warning: unaligning (T0547)L332 (1oewA)D91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1oewA)S94 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1oewA 87 :DV T0547 333 :IA 1oewA 92 :TV Number of specific fragments extracted= 2 number of extra gaps= 3 total=68656 # 1br9.327.13 read from T0547.t04.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVLIA 1br9 14 :NADVVIRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=68657 # 1f9vA.327.215 read from T0547.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0547)H329 (1f9vA)H600 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1f9vA)H606 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :AN 1f9vA 598 :AS T0547 330 :AVLIA 1f9vA 601 :SIFII Number of specific fragments extracted= 2 number of extra gaps= 2 total=68659 # 1svpA.327.115 read from T0547.t04.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)I333 (1svpA)V227 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1svpA)A228 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1svpA)I229 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVL 1svpA 221 :DNSGRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=68660 # 1xdnA.327.154 read from T0547.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)N328 (1xdnA)E203 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1xdnA)H205 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xdnA)D210 because Y (epsilon') conformation "forbidden" or filtered. T0547 327 :A 1xdnA 202 :P T0547 329 :H 1xdnA 204 :L T0547 331 :VLIA 1xdnA 206 :FFAF Number of specific fragments extracted= 3 number of extra gaps= 3 total=68663 # 1uscA.327.112 read from T0547.t04.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)A327 (1uscA)G113 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 1uscA 114 :AYAAYEL Number of specific fragments extracted= 1 number of extra gaps= 2 total=68664 # 2bmoA.327.306 read from T0547.t04.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 327 :A 2bmoA 307 :G T0547 330 :AVLIAP 2bmoA 310 :AFRVWN Number of specific fragments extracted= 2 number of extra gaps= 1 total=68666 # 1lmiA.327.18 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)H329 (1lmiA)Q21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :AN 1lmiA 19 :VG T0547 330 :AVLIA 1lmiA 22 :VVLGW Number of specific fragments extracted= 2 number of extra gaps= 2 total=68668 # 1tp6A.327.82 read from T0547.t04.many.frag # found chain 1tp6A in training set Warning: unaligning (T0547)H329 (1tp6A)G85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1tp6A)R91 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :AN 1tp6A 83 :VD T0547 330 :AVLIA 1tp6A 86 :ATLAY Number of specific fragments extracted= 2 number of extra gaps= 2 total=68670 # 1tca.327.110 read from T0547.t04.many.frag # found chain 1tca in training set T0547 327 :ANHAVLIAP 1tca 111 :AQWGLTFFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=68671 # 1knwA.328.275 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 328 :NHAVLIAPV 1knwA 276 :QSGVLITQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=68672 # 7odcA.328.281 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A334 (7odcA)V288 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLI 7odcA 282 :SAFTLA T0547 335 :PV 7odcA 289 :NI Number of specific fragments extracted= 2 number of extra gaps= 1 total=68674 # 1rcqA.328.230 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N328 (1rcqA)P231 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1rcqA 232 :VMTLES T0547 336 :V 1rcqA 239 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=68676 # 1n7zA.328.124 read from T0547.t04.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)N328 (1n7zA)G125 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1n7zA)G127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 1n7zA 126 :A T0547 331 :VLIA 1n7zA 128 :WLVY T0547 336 :V 1n7zA 133 :C Number of specific fragments extracted= 3 number of extra gaps= 3 total=68679 # 1wckA.328.129 read from T0547.t04.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1wckA 130 :ET T0547 331 :VLIA 1wckA 133 :FYKI T0547 336 :V 1wckA 138 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=68682 # 1l1oC.328.24 read from T0547.t04.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)A330 (1l1oC)F462 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1l1oC)S464 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1l1oC)A466 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1l1oC 460 :DY T0547 331 :V 1l1oC 463 :S T0547 333 :I 1l1oC 465 :V T0547 336 :V 1l1oC 468 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=68686 # 1uadC.328.55 read from T0547.t04.many.frag # found chain 1uadC in template set Warning: unaligning (T0547)N328 (1uadC)S56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1uadC)S58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1uadC)C62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uadC)R63 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 1uadC 57 :A T0547 331 :VLI 1uadC 59 :KIV T0547 336 :V 1uadC 64 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=68689 # 1bywA.328.78 read from T0547.t04.many.frag # found chain 1bywA in template set Warning: unaligning (T0547)P335 (1bywA)D111 because D (zeta) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 1bywA 104 :SCFLCLV T0547 336 :V 1bywA 112 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=68691 # 1xjvA.328.154 read from T0547.t04.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)N328 (1xjvA)Q160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1xjvA 161 :YFDLTC T0547 336 :V 1xjvA 168 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=68693 # 2bvcA.328.140 read from T0547.t04.many.frag # found chain 2bvcA in template set T0547 328 :NHAVLIAPV 2bvcA 133 :EAEFYIFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=68694 # 1ecrA.328.29 read from T0547.t04.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)P335 (1ecrA)R37 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 1ecrA 30 :QHKLLVA T0547 336 :V 1ecrA 38 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=68696 # 1u8xX.328.223 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)H329 (1u8xX)H202 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :N 1u8xX 201 :N T0547 331 :VLIA 1u8xX 204 :GWWT T0547 336 :V 1u8xX 209 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=68699 # 2yhx.328.71 read from T0547.t04.many.frag # found chain 2yhx in template set T0547 328 :NHAVLIAPV 2yhx 73 :DLEVILISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=68700 # 1te0A.328.16 read from T0547.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 T0547 328 :NHAVL 1te0A 53 :RAAPA T0547 335 :PV 1te0A 60 :NV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68702 # 1uc2A.328.201 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)H329 (1uc2A)H203 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uc2A)V209 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :N 1uc2A 202 :N T0547 331 :VLIA 1uc2A 205 :LEVQ T0547 336 :V 1uc2A 210 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=68705 # 1mdaH.328.332 read from T0547.t04.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)L332 (1mdaH)E337 because L (left) conformation "forbidden" or filtered. T0547 328 :NHAV 1mdaH 333 :SAGT T0547 333 :IAPV 1mdaH 338 :VLDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=68707 # 1uscA.328.113 read from T0547.t04.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 1uscA 114 :AYAAYEL T0547 336 :V 1uscA 122 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=68709 # 3sil.328.181 read from T0547.t04.many.frag # found chain 3sil in training set T0547 328 :NHAVLIAPV 3sil 185 :NDGKLVFPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=68710 # 1flmA.328.106 read from T0547.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0547)A330 (1flmA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0547 328 :NH 1flmA 107 :AR T0547 331 :VLIAPV 1flmA 110 :ALVITV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68712 2f4lA expands to /projects/compbio/data/pdb/2f4l.pdb.gz 2f4lA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2f4lA.328.74 read from T0547.t04.many.frag # adding 2f4lA to template set # found chain 2f4lA in template set Warning: unaligning (T0547)A334 (2f4lA)V69 because D (zeta) conformation "forbidden" or filtered. T0547 328 :NHAVLI 2f4lA 63 :PGDTLK T0547 335 :PV 2f4lA 70 :RI Number of specific fragments extracted= 2 number of extra gaps= 1 total=68714 # 1br9.328.14 read from T0547.t04.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)A334 (1br9)A21 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLI 1br9 15 :ADVVIR T0547 336 :V 1br9 23 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=68716 # 2ae0X.328.266 read from T0547.t04.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)H329 (2ae0X)G268 because T (delta_L) conformation "forbidden" or filtered. T0547 328 :N 2ae0X 267 :P T0547 330 :AVLIAPV 2ae0X 269 :TTLLAEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68718 # 1oz2A.328.162 read from T0547.t04.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1oz2A)C363 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1oz2A)C363 Warning: unaligning (T0547)P335 (1oz2A)S366 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHA 1oz2A 359 :PSL T0547 333 :IA 1oz2A 364 :VA T0547 336 :V 1oz2A 367 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=68721 # 1lmiA.328.19 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)H329 (1lmiA)Q21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1lmiA)W26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :N 1lmiA 20 :G T0547 330 :AVLI 1lmiA 22 :VVLG T0547 336 :V 1lmiA 28 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=68724 # 2aneA.328.75 read from T0547.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 2aneA 69 :FTVGTVA T0547 336 :V 2aneA 77 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=68726 # 1b43A.328.179 read from T0547.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0547)P335 (1b43A)N186 because T (delta_L) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 1b43A 179 :GAPRLVR T0547 336 :V 1b43A 187 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=68728 # 1pguA.328.390 read from T0547.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)P335 (1pguA)N398 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V336 (1pguA)G399 because T (delta_L) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 1pguA 391 :WDDTLKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=68729 # 1fl0A.328.4 read from T0547.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)A334 (1fl0A)G160 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLI 1fl0A 154 :RLDLRI T0547 336 :V 1fl0A 162 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=68731 # 1oewA.328.86 read from T0547.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)N328 (1oewA)D87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1oewA)T90 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1oewA)T90 Warning: unaligning (T0547)P335 (1oewA)S94 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 1oewA 88 :V T0547 332 :LIA 1oewA 91 :DTV T0547 336 :V 1oewA 95 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=68734 1cewI expands to /projects/compbio/data/pdb/1cew.pdb.gz 1cewI:# 1cewI.328.30 read from T0547.t04.many.frag # adding 1cewI to template set # found chain 1cewI in template set Warning: unaligning (T0547)N328 (1cewI)K39 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE in next template residue (1cewI)S41 Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S41 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S42 Warning: unaligning (T0547)P335 (1cewI)R46 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1cewI 43 :RVV T0547 336 :V 1cewI 47 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=68736 # 1knwA.329.276 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 329 :HAVLIAPVL 1knwA 277 :SGVLITQVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=68737 # 7odcA.329.282 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A330 (7odcA)F284 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 7odcA 283 :A T0547 331 :VLIAPVL 7odcA 285 :TLAVNII Number of specific fragments extracted= 2 number of extra gaps= 1 total=68739 # 1rcqA.329.231 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLI 1rcqA 232 :VMTLE T0547 336 :VL 1rcqA 239 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=68741 # 1n7zA.329.125 read from T0547.t04.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1n7zA 126 :AGWLVY T0547 336 :VL 1n7zA 133 :CL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68743 # 1l1oC.329.25 read from T0547.t04.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)A330 (1l1oC)F462 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1l1oC)S464 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1l1oC)A466 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 1l1oC 461 :Y T0547 331 :V 1l1oC 463 :S T0547 333 :I 1l1oC 465 :V T0547 336 :VL 1l1oC 468 :VV Number of specific fragments extracted= 4 number of extra gaps= 3 total=68747 # 1wckA.329.130 read from T0547.t04.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1wckA 131 :TGFYKI T0547 336 :VL 1wckA 138 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=68749 # 1uscA.329.114 read from T0547.t04.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1uscA 115 :YAAYEL T0547 336 :VL 1uscA 122 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68751 # 1bywA.329.79 read from T0547.t04.many.frag # found chain 1bywA in template set Warning: unaligning (T0547)P335 (1bywA)D111 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1bywA)V113 because D (zeta) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1bywA 105 :CFLCLV T0547 336 :V 1bywA 112 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=68753 # 1xjvA.329.155 read from T0547.t04.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A330 (1xjvA)F162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 1xjvA 161 :Y T0547 331 :VLI 1xjvA 163 :DLT T0547 336 :VL 1xjvA 168 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=68756 # 1te0A.329.17 read from T0547.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 T0547 329 :HAVL 1te0A 54 :AAPA T0547 335 :PVL 1te0A 60 :NVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=68758 # 2aneA.329.76 read from T0547.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 2aneA 70 :TVGTVA T0547 336 :VL 2aneA 77 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=68760 # 2f4lA.329.75 read from T0547.t04.many.frag # found chain 2f4lA in template set T0547 329 :HAVLIAPVL 2f4lA 64 :GDTLKVRIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=68761 # 1uadC.329.56 read from T0547.t04.many.frag # found chain 1uadC in template set Warning: unaligning (T0547)A334 (1uadC)C62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uadC)R63 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLI 1uadC 57 :ASKIV T0547 336 :VL 1uadC 64 :VG Number of specific fragments extracted= 2 number of extra gaps= 1 total=68763 # 1br9.329.15 read from T0547.t04.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1br9 16 :DVVIRA T0547 336 :VL 1br9 23 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68765 # 1fl0A.329.5 read from T0547.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1fl0A 155 :LDLRIG T0547 336 :VL 1fl0A 162 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=68767 # 2bvcA.329.141 read from T0547.t04.many.frag # found chain 2bvcA in template set Warning: unaligning (T0547)A334 (2bvcA)F139 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V336 (2bvcA)S141 because Y (epsilon') conformation "forbidden" or filtered. T0547 329 :HAVLI 2bvcA 134 :AEFYI T0547 335 :P 2bvcA 140 :D T0547 337 :L 2bvcA 142 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=68770 # 1lmiA.329.20 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)H329 (1lmiA)Q21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1lmiA)V22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1lmiA)W26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLI 1lmiA 23 :VLG T0547 336 :VL 1lmiA 28 :VS Number of specific fragments extracted= 2 number of extra gaps= 2 total=68772 # 1u8xX.329.224 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1u8xX 202 :HFGWWT T0547 336 :VL 1u8xX 209 :IQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=68774 # 1flmA.329.107 read from T0547.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0547)A330 (1flmA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0547 329 :H 1flmA 108 :R T0547 331 :VLIAPVL 1flmA 110 :ALVITVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68776 # 1uc2A.329.202 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)A330 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uc2A)V209 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 1uc2A 203 :H T0547 331 :VLIA 1uc2A 205 :LEVQ T0547 336 :VL 1uc2A 210 :VD Number of specific fragments extracted= 3 number of extra gaps= 2 total=68779 # 1oz2A.329.163 read from T0547.t04.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1oz2A)C363 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1oz2A)C363 Warning: unaligning (T0547)P335 (1oz2A)S366 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HA 1oz2A 360 :SL T0547 333 :IA 1oz2A 364 :VA T0547 336 :VL 1oz2A 367 :VT Number of specific fragments extracted= 3 number of extra gaps= 2 total=68782 # 2yhx.329.72 read from T0547.t04.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)A330 (2yhx)E75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (2yhx)I79 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 2yhx 74 :L T0547 331 :VLI 2yhx 76 :VIL T0547 335 :PVL 2yhx 80 :SLA Number of specific fragments extracted= 3 number of extra gaps= 2 total=68785 # 1mdaH.329.333 read from T0547.t04.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)L332 (1mdaH)E337 because L (left) conformation "forbidden" or filtered. T0547 329 :HAV 1mdaH 334 :AGT T0547 333 :IAPVL 1mdaH 338 :VLDIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=68787 # 1o75A.329.70 read from T0547.t04.many.frag # found chain 1o75A in template set T0547 329 :HAVLIAPVL 1o75A 71 :VEVLGEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=68788 # 1s1dA.329.112 read from T0547.t04.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)A334 (1s1dA)Y118 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLI 1s1dA 113 :RTGVV T0547 335 :PVL 1s1dA 119 :QIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=68790 # 1zboA.329.63 read from T0547.t04.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)V331 (1zboA)G66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1zboA)R70 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HA 1zboA 64 :RA T0547 332 :LIA 1zboA 67 :TMA T0547 336 :VL 1zboA 71 :ID Number of specific fragments extracted= 3 number of extra gaps= 2 total=68793 # 1ecrA.329.30 read from T0547.t04.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)H329 (1ecrA)H31 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1ecrA)R37 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 1ecrA 32 :KLLVA T0547 336 :VL 1ecrA 38 :VF Number of specific fragments extracted= 2 number of extra gaps= 2 total=68795 # 1cewI.329.31 read from T0547.t04.many.frag # found chain 1cewI in template set Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE in next template residue (1cewI)S41 Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S41 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S42 Warning: unaligning (T0547)P335 (1cewI)R46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 because of BadResidue code BAD_PEPTIDE in next template residue (1cewI)S49 T0547 332 :LIA 1cewI 43 :RVV T0547 336 :V 1cewI 47 :V Number of specific fragments extracted= 2 number of extra gaps= 3 total=68797 # 1pjxA.329.197 read from T0547.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0547)H329 (1pjxA)K198 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1pjxA)L200 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1pjxA)L200 T0547 332 :LIAPVL 1pjxA 201 :WSYDIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=68798 # 2ae0X.329.267 read from T0547.t04.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)H329 (2ae0X)G268 because T (delta_L) conformation "forbidden" or filtered. T0547 330 :AVLIAPVL 2ae0X 269 :TTLLAEVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=68799 # 1knwA.330.277 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 330 :AVLIAPVLE 1knwA 278 :GVLITQVRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=68800 # 7odcA.330.283 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A334 (7odcA)V288 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLI 7odcA 284 :FTLA T0547 335 :PVL 7odcA 289 :NII Number of specific fragments extracted= 2 number of extra gaps= 2 total=68802 # 1rcqA.330.232 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1rcqA)S241 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 1rcqA 233 :MTLES T0547 336 :VL 1rcqA 239 :VI Number of specific fragments extracted= 2 number of extra gaps= 2 total=68804 # 1n7zA.330.126 read from T0547.t04.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 1n7zA 127 :GWLVY T0547 336 :VLE 1n7zA 133 :CLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=68806 # 1l1oC.330.26 read from T0547.t04.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)A330 (1l1oC)F462 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1l1oC)S464 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1l1oC)Y470 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :V 1l1oC 463 :S T0547 333 :IA 1l1oC 465 :VA T0547 336 :VL 1l1oC 468 :VV Number of specific fragments extracted= 3 number of extra gaps= 4 total=68809 # 2aneA.330.77 read from T0547.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 2aneA 71 :VGTVA T0547 336 :VLE 2aneA 77 :ILQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=68811 # 1lmiA.330.21 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 1lmiA 22 :VVLGW T0547 336 :VLE 1lmiA 28 :VSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=68813 # 1uscA.330.115 read from T0547.t04.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1uscA)E124 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIA 1uscA 116 :AAYEL T0547 336 :VL 1uscA 122 :LL Number of specific fragments extracted= 2 number of extra gaps= 2 total=68815 # 1wckA.330.131 read from T0547.t04.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1wckA)I136 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1wckA)A140 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLI 1wckA 133 :FYK T0547 336 :VL 1wckA 138 :VI Number of specific fragments extracted= 2 number of extra gaps= 3 total=68817 # 1te0A.330.18 read from T0547.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 T0547 330 :AVL 1te0A 55 :APA T0547 335 :PVLE 1te0A 60 :NVYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=68819 # 1fl0A.330.6 read from T0547.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 1fl0A 156 :DLRIG T0547 336 :VLE 1fl0A 162 :IIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=68821 # 1br9.330.16 read from T0547.t04.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIA 1br9 17 :VVIRA T0547 336 :VL 1br9 23 :AV Number of specific fragments extracted= 2 number of extra gaps= 2 total=68823 # 1bywA.330.80 read from T0547.t04.many.frag # found chain 1bywA in template set Warning: unaligning (T0547)P335 (1bywA)D111 because D (zeta) conformation "forbidden" or filtered. T0547 330 :AVLIA 1bywA 106 :FLCLV T0547 336 :VLE 1bywA 112 :VVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=68825 # 1xjvA.330.156 read from T0547.t04.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A330 (1xjvA)F162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLI 1xjvA 163 :DLT T0547 336 :VLE 1xjvA 168 :LLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=68827 # 1flmA.330.108 read from T0547.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0547)A334 (1flmA)I113 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLI 1flmA 109 :AALV T0547 335 :PVLE 1flmA 114 :TVVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=68829 # 2f4lA.330.76 read from T0547.t04.many.frag # found chain 2f4lA in template set Warning: unaligning (T0547)A330 (2f4lA)D65 because P (beta_P) conformation "forbidden" or filtered. T0547 331 :VLIAPVLE 2f4lA 66 :TLKVRIKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=68830 # 1zboA.330.64 read from T0547.t04.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)P335 (1zboA)R70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1zboA)H73 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIA 1zboA 65 :AGTMA T0547 336 :VL 1zboA 71 :ID Number of specific fragments extracted= 2 number of extra gaps= 2 total=68832 # 1uc2A.330.203 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)A330 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uc2A)V209 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1uc2A 205 :LEVQ T0547 336 :VLE 1uc2A 210 :VDK Number of specific fragments extracted= 2 number of extra gaps= 2 total=68834 # 1o75A.330.71 read from T0547.t04.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)E338 (1o75A)S80 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIAPVL 1o75A 72 :EVLGEKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=68835 # 1u8xX.330.225 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1u8xX 204 :GWWT T0547 336 :VLE 1u8xX 209 :IQD Number of specific fragments extracted= 2 number of extra gaps= 2 total=68837 # 1uadC.330.57 read from T0547.t04.many.frag # found chain 1uadC in template set Warning: unaligning (T0547)A330 (1uadC)S58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uadC)R63 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1uadC 59 :KIVC T0547 336 :VLE 1uadC 64 :VGQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=68839 # 1zd7A.330.120 read from T0547.t04.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)E338 (1zd7A)G129 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIAPVL 1zd7A 121 :TIKMVKVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=68840 # 2bvcA.330.142 read from T0547.t04.many.frag # found chain 2bvcA in template set T0547 330 :AVLIAPVLE 2bvcA 135 :EFYIFDSVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=68841 # 1oz2A.330.164 read from T0547.t04.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1oz2A)C363 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1oz2A)C363 Warning: unaligning (T0547)A334 (1oz2A)A365 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1oz2A)S366 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1oz2A)D369 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :A 1oz2A 361 :L T0547 333 :I 1oz2A 364 :V T0547 336 :VL 1oz2A 367 :VT Number of specific fragments extracted= 3 number of extra gaps= 3 total=68844 # 1c8uA.330.70 read from T0547.t04.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)A334 (1c8uA)Y76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLI 1c8uA 72 :KPII T0547 336 :VLE 1c8uA 78 :VET Number of specific fragments extracted= 2 number of extra gaps= 1 total=68846 # 1o65A.330.153 read from T0547.t04.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)V331 (1o65A)G153 because S (epsilon) conformation "forbidden" or filtered. T0547 330 :A 1o65A 152 :V T0547 332 :LIAPVLE 1o65A 154 :WLYSVIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=68848 # 1cewI.330.32 read from T0547.t04.many.frag # found chain 1cewI in template set Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S41 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S42 Warning: unaligning (T0547)A334 (1cewI)V45 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1cewI)R46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 because of BadResidue code BAD_PEPTIDE in next template residue (1cewI)S49 Warning: unaligning (T0547)E338 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S49 T0547 332 :LI 1cewI 43 :RV T0547 336 :V 1cewI 47 :V Number of specific fragments extracted= 2 number of extra gaps= 3 total=68850 # 1w61A.330.330 read from T0547.t04.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)P335 (1w61A)R336 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1w61A)G339 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIA 1w61A 331 :SLFQG T0547 336 :VL 1w61A 337 :VL Number of specific fragments extracted= 2 number of extra gaps= 2 total=68852 # 1qyrA.330.147 read from T0547.t04.many.frag # found chain 1qyrA in template set T0547 330 :AVLIAPVLE 1qyrA 164 :AQYYCNVIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=68853 # 2yhx.330.73 read from T0547.t04.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)E338 because of BadResidue code BAD_PEPTIDE in next template residue (2yhx)R84 T0547 330 :AVLIAPVL 2yhx 75 :EVILISLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=68854 # 1knwA.331.278 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 331 :VLIAPVLEL 1knwA 279 :VLITQVRSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=68855 # 7odcA.331.284 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIAPVL 7odcA 285 :TLAVNII T0547 339 :L 7odcA 293 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=68857 # 1rcqA.331.233 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLI 1rcqA 234 :TLE T0547 336 :VLEL 1rcqA 239 :VISV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68859 # 1n7zA.331.127 read from T0547.t04.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1n7zA 128 :WLVY T0547 336 :VLEL 1n7zA 133 :CLDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68861 # 2aneA.331.78 read from T0547.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2aneA)Q79 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 2aneA 72 :GTVA T0547 336 :VL 2aneA 77 :IL T0547 339 :L 2aneA 80 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=68864 # 1l1oC.331.27 read from T0547.t04.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1l1oC)Y470 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIA 1l1oC 463 :SSVA T0547 336 :VL 1l1oC 468 :VV T0547 339 :L 1l1oC 471 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=68867 # 1lmiA.331.22 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)A334 (1lmiA)W26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. T0547 331 :VLI 1lmiA 23 :VLG T0547 336 :V 1lmiA 28 :V T0547 339 :L 1lmiA 31 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=68870 # 1uscA.331.116 read from T0547.t04.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)V331 (1uscA)A117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1uscA)E124 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1uscA 118 :YEL T0547 336 :VL 1uscA 122 :LL T0547 339 :L 1uscA 125 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=68873 # 1br9.331.17 read from T0547.t04.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIA 1br9 18 :VIRA T0547 336 :VL 1br9 23 :AV T0547 339 :L 1br9 26 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=68876 # 1fl0A.331.7 read from T0547.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1fl0A 157 :LRIG T0547 336 :VLEL 1fl0A 162 :IITA Number of specific fragments extracted= 2 number of extra gaps= 1 total=68878 # 1xjvA.331.157 read from T0547.t04.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1xjvA 163 :DLTC T0547 336 :VLEL 1xjvA 168 :LLGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=68880 # 1c8uA.331.71 read from T0547.t04.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1c8uA)T80 because P (beta_P) conformation "forbidden" or filtered. T0547 331 :VLIA 1c8uA 73 :PIIY T0547 336 :VL 1c8uA 78 :VE T0547 339 :L 1c8uA 81 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=68883 # 1wckA.331.132 read from T0547.t04.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A334 (1wckA)I136 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLI 1wckA 133 :FYK T0547 336 :VLEL 1wckA 138 :VIAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=68885 # 1zd7A.331.121 read from T0547.t04.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)L339 (1zd7A)R130 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIAPVLE 1zd7A 122 :IKMVKVIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=68886 # 1te0A.331.19 read from T0547.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 T0547 331 :VL 1te0A 56 :PA T0547 335 :PVLEL 1te0A 60 :NVYNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=68888 # 1bywA.331.81 read from T0547.t04.many.frag # found chain 1bywA in template set Warning: unaligning (T0547)P335 (1bywA)D111 because D (zeta) conformation "forbidden" or filtered. T0547 331 :VLIA 1bywA 107 :LCLV T0547 336 :VLEL 1bywA 112 :VVPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=68890 # 2f4lA.331.77 read from T0547.t04.many.frag # found chain 2f4lA in template set T0547 331 :VLIAPVLEL 2f4lA 66 :TLKVRIKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=68891 # 1w61A.331.331 read from T0547.t04.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)P335 (1w61A)R336 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1w61A)G339 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIA 1w61A 332 :LFQG T0547 336 :VL 1w61A 337 :VL T0547 339 :L 1w61A 340 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=68894 # 1o65A.331.154 read from T0547.t04.many.frag # found chain 1o65A in template set T0547 331 :VLIAPVLEL 1o65A 153 :GWLYSVIAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=68895 # 1flmA.331.109 read from T0547.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0547)A334 (1flmA)I113 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLI 1flmA 110 :ALV T0547 335 :PVLEL 1flmA 114 :TVVSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=68897 # 1zboA.331.65 read from T0547.t04.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)P335 (1zboA)R70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1zboA)H73 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIA 1zboA 66 :GTMA T0547 336 :VL 1zboA 71 :ID T0547 339 :L 1zboA 74 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=68900 # 1o75A.331.72 read from T0547.t04.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)E338 (1o75A)S80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1o75A)K81 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIAPVL 1o75A 73 :VLGEKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=68901 # 1oz2A.331.165 read from T0547.t04.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1oz2A)C363 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1oz2A)C363 Warning: unaligning (T0547)P335 (1oz2A)S366 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1oz2A)D369 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1oz2A 364 :VA T0547 336 :VL 1oz2A 367 :VT T0547 339 :L 1oz2A 370 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=68904 # 1uc2A.331.204 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)P335 (1uc2A)V209 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1uc2A 205 :LEVQ T0547 336 :VLEL 1uc2A 210 :VDKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=68906 # 2f1lA.331.20 read from T0547.t04.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)A334 (2f1lA)G12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (2f1lA)K13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2f1lA)S16 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLI 2f1lA 9 :VVI T0547 336 :VL 2f1lA 14 :IV T0547 339 :L 2f1lA 17 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=68909 # 1uadC.331.58 read from T0547.t04.many.frag # found chain 1uadC in template set Warning: unaligning (T0547)A334 (1uadC)C62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uadC)R63 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLI 1uadC 59 :KIV T0547 336 :VLEL 1uadC 64 :VGQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=68911 1a1x expands to /projects/compbio/data/pdb/1a1x.pdb.gz 1a1x:Warning: there is no chain 1a1x will retry with 1a1xA # 1a1x.331.82 read from T0547.t04.many.frag # adding 1a1x to template set # found chain 1a1x in template set Warning: unaligning (T0547)V331 (1a1x)S83 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1a1x)H90 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIAPVL 1a1x 84 :RLWQIQ T0547 339 :L 1a1x 91 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=68913 # 2yhx.331.74 read from T0547.t04.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)E338 because of BadResidue code BAD_PEPTIDE in next template residue (2yhx)R84 Warning: unaligning (T0547)L339 because of BadResidue code BAD_PEPTIDE at template residue (2yhx)R84 T0547 331 :VLIAPVL 2yhx 76 :VILISLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=68914 # 1u8xX.331.226 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1u8xX)D211 because P (beta_P) conformation "forbidden" or filtered. T0547 331 :VLIA 1u8xX 204 :GWWT T0547 336 :VL 1u8xX 209 :IQ T0547 339 :L 1u8xX 212 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=68917 # 1ze3C.331.83 read from T0547.t04.many.frag # found chain 1ze3C in template set Warning: unaligning (T0547)P335 (1ze3C)K88 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1ze3C 84 :WMNV T0547 336 :VLEL 1ze3C 89 :AIPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=68919 # 1knwA.332.279 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 332 :LIAPVLELF 1knwA 280 :LITQVRSVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=68920 # 1rcqA.332.234 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LI 1rcqA 235 :LE T0547 336 :VLELF 1rcqA 239 :VISVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=68922 # 7odcA.332.285 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIAPVL 7odcA 286 :LAVNII T0547 339 :LF 7odcA 293 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=68924 # 2aneA.332.79 read from T0547.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 2aneA 73 :TVA T0547 336 :VLELF 2aneA 77 :ILQML Number of specific fragments extracted= 2 number of extra gaps= 1 total=68926 # 1uscA.332.117 read from T0547.t04.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1uscA)E124 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1uscA 118 :YEL T0547 336 :VL 1uscA 122 :LL T0547 339 :LF 1uscA 125 :VH Number of specific fragments extracted= 3 number of extra gaps= 2 total=68929 # 1n7zA.332.128 read from T0547.t04.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1n7zA 129 :LVY T0547 336 :VLELF 1n7zA 133 :CLDVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=68931 # 1br9.332.18 read from T0547.t04.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1br9 19 :IRA T0547 336 :VL 1br9 23 :AV T0547 339 :LF 1br9 26 :EK Number of specific fragments extracted= 3 number of extra gaps= 2 total=68934 # 1lmiA.332.23 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1lmiA 24 :LGW T0547 336 :V 1lmiA 28 :V T0547 338 :ELF 1lmiA 30 :DLK Number of specific fragments extracted= 3 number of extra gaps= 2 total=68937 # 1l1oC.332.28 read from T0547.t04.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)L332 (1l1oC)S464 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1l1oC)A466 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1l1oC)Y470 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :I 1l1oC 465 :V T0547 336 :VL 1l1oC 468 :VV T0547 339 :LF 1l1oC 471 :LR Number of specific fragments extracted= 3 number of extra gaps= 3 total=68940 # 1zd7A.332.122 read from T0547.t04.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)E338 (1zd7A)G129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1zd7A)R130 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIAPVL 1zd7A 123 :KMVKVI T0547 340 :F 1zd7A 131 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=68942 # 1xjvA.332.158 read from T0547.t04.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1xjvA 164 :LTC T0547 336 :VLELF 1xjvA 168 :LLGKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=68944 # 1fl0A.332.8 read from T0547.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1fl0A 158 :RIG T0547 336 :VLELF 1fl0A 162 :IITAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=68946 # 1w61A.332.332 read from T0547.t04.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)P335 (1w61A)R336 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1w61A 333 :FQG T0547 336 :VLELF 1w61A 337 :VLGEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=68948 # 1a1x.332.83 read from T0547.t04.many.frag # found chain 1a1x in template set Warning: unaligning (T0547)A334 (1a1x)W86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1a1x)H91 because D (zeta) conformation "forbidden" or filtered. T0547 332 :LI 1a1x 84 :RL T0547 335 :PVLE 1a1x 87 :QIQH T0547 340 :F 1a1x 92 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=68951 # 1c8uA.332.72 read from T0547.t04.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1c8uA 74 :IIY T0547 336 :VLELF 1c8uA 78 :VETLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=68953 # 1pfbA.332.4 read from T0547.t04.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)P335 (1pfbA)K30 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1pfbA 27 :AAE T0547 336 :VL 1pfbA 31 :II T0547 339 :LF 1pfbA 34 :KR Number of specific fragments extracted= 3 number of extra gaps= 2 total=68956 # 1te0A.332.20 read from T0547.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)L66 T0547 332 :L 1te0A 57 :A T0547 335 :PVLEL 1te0A 60 :NVYNR Number of specific fragments extracted= 2 number of extra gaps= 2 total=68958 # 1zboA.332.66 read from T0547.t04.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)P335 (1zboA)R70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1zboA)H73 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1zboA 67 :TMA T0547 336 :VL 1zboA 71 :ID T0547 339 :LF 1zboA 74 :WE Number of specific fragments extracted= 3 number of extra gaps= 2 total=68961 # 1jb0E.332.18 read from T0547.t04.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)P335 (1jb0E)T22 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1jb0E 19 :EVG T0547 336 :VLELF 1jb0E 23 :VASVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=68963 # 2f4lA.332.78 read from T0547.t04.many.frag # found chain 2f4lA in template set Warning: unaligning (T0547)A334 (2f4lA)V69 because D (zeta) conformation "forbidden" or filtered. T0547 332 :LI 2f4lA 67 :LK T0547 335 :PVLELF 2f4lA 70 :RIKRIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=68965 # 1o65A.332.155 read from T0547.t04.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)L332 (1o65A)W154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1o65A)A160 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IAPVL 1o65A 155 :LYSVI T0547 339 :LF 1o65A 161 :PG Number of specific fragments extracted= 2 number of extra gaps= 2 total=68967 # 1bywA.332.82 read from T0547.t04.many.frag # found chain 1bywA in template set Warning: unaligning (T0547)P335 (1bywA)D111 because D (zeta) conformation "forbidden" or filtered. T0547 332 :LIA 1bywA 108 :CLV T0547 336 :VLELF 1bywA 112 :VVPVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=68969 # 2f1lA.332.21 read from T0547.t04.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)P335 (2f1lA)K13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2f1lA)S16 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 2f1lA 10 :VIG T0547 336 :VL 2f1lA 14 :IV T0547 339 :LF 2f1lA 17 :VY Number of specific fragments extracted= 3 number of extra gaps= 2 total=68972 # 1x6oA.332.46 read from T0547.t04.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)P335 (1x6oA)K42 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1x6oA 39 :RPC T0547 336 :VLELF 1x6oA 43 :VIDLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=68974 # 1wckA.332.133 read from T0547.t04.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1wckA 134 :YKI T0547 336 :VLELF 1wckA 138 :VIANT Number of specific fragments extracted= 2 number of extra gaps= 1 total=68976 # 2f5gA.332.46 read from T0547.t04.many.frag # found chain 2f5gA in training set Warning: unaligning (T0547)P335 (2f5gA)E50 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 2f5gA 47 :LGC T0547 336 :VLELF 2f5gA 51 :IIALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=68978 # 1flmA.332.110 read from T0547.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0547)E338 (1flmA)S117 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIAPVL 1flmA 111 :LVITVV T0547 339 :LF 1flmA 118 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=68980 # 1f60A.332.243 read from T0547.t04.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)A334 (1f60A)L246 because D (zeta) conformation "forbidden" or filtered. T0547 332 :LI 1f60A 244 :LR T0547 335 :PVLELF 1f60A 247 :PLQDVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=68982 # 1i8dA.332.7 read from T0547.t04.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E338 (1i8dA)S14 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIAPVL 1i8dA 8 :GTAKLV T0547 339 :LF 1i8dA 15 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=68984 # 1n4wA.332.240 read from T0547.t04.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)P335 (1n4wA)Q249 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1n4wA 246 :TLH T0547 336 :VLELF 1n4wA 250 :VKTIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=68986 # 1knwA.333.280 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E338 (1knwA)S286 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F340 (1knwA)K288 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IAPVL 1knwA 281 :ITQVR T0547 339 :L 1knwA 287 :V T0547 341 :S 1knwA 289 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=68989 # 1rcqA.333.235 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :I 1rcqA 236 :E T0547 336 :VLELFS 1rcqA 239 :VISVRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=68991 # 7odcA.333.286 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IAPVL 7odcA 287 :AVNII T0547 339 :LFS 7odcA 293 :KKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=68993 # 2aneA.333.80 read from T0547.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 2aneA 74 :VA T0547 336 :VLELFS 2aneA 77 :ILQMLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=68995 # 1uscA.333.118 read from T0547.t04.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)A334 (1uscA)L120 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :I 1uscA 119 :E T0547 336 :VLELFS 1uscA 122 :LLEVHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=68997 # 1a1x.333.84 read from T0547.t04.many.frag # found chain 1a1x in template set T0547 333 :IAPVLELFS 1a1x 85 :LWQIQHHLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=68998 # 1lmiA.333.24 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. T0547 333 :IA 1lmiA 25 :GW T0547 336 :V 1lmiA 28 :V T0547 339 :LFS 1lmiA 31 :LKS Number of specific fragments extracted= 3 number of extra gaps= 2 total=69001 # 1pfbA.333.5 read from T0547.t04.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)P335 (1pfbA)K30 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1pfbA 28 :AE T0547 336 :VL 1pfbA 31 :II T0547 339 :LFS 1pfbA 34 :KRV Number of specific fragments extracted= 3 number of extra gaps= 2 total=69004 # 1fl0A.333.9 read from T0547.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 1fl0A 159 :IG T0547 336 :VLELFS 1fl0A 162 :IITARK Number of specific fragments extracted= 2 number of extra gaps= 1 total=69006 # 1l1oC.333.29 read from T0547.t04.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)A334 (1l1oC)A466 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1l1oC)Y470 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :I 1l1oC 465 :V T0547 336 :VL 1l1oC 468 :VV T0547 339 :LFS 1l1oC 471 :LRK Number of specific fragments extracted= 3 number of extra gaps= 2 total=69009 # 1br9.333.19 read from T0547.t04.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)A334 (1br9)A21 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :I 1br9 20 :R T0547 336 :VL 1br9 23 :AV T0547 339 :LFS 1br9 26 :EKE Number of specific fragments extracted= 3 number of extra gaps= 2 total=69012 # 1zd7A.333.123 read from T0547.t04.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)E338 (1zd7A)G129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1zd7A)R130 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IAPVL 1zd7A 124 :MVKVI T0547 340 :FS 1zd7A 131 :RS Number of specific fragments extracted= 2 number of extra gaps= 1 total=69014 # 1jb0E.333.19 read from T0547.t04.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)P335 (1jb0E)T22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1jb0E 20 :VG T0547 336 :VL 1jb0E 23 :VA T0547 339 :LFS 1jb0E 26 :VDQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=69017 # 1n7zA.333.129 read from T0547.t04.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1n7zA)D135 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1n7zA 130 :VY T0547 336 :VL 1n7zA 133 :CL T0547 339 :LFS 1n7zA 136 :VPD Number of specific fragments extracted= 3 number of extra gaps= 2 total=69020 # 1xjvA.333.159 read from T0547.t04.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :I 1xjvA 165 :T T0547 336 :VLELFS 1xjvA 168 :LLGKAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=69022 # 1c8uA.333.73 read from T0547.t04.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 1c8uA 75 :IY T0547 336 :VLELFS 1c8uA 78 :VETLRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=69024 # 1f60A.333.244 read from T0547.t04.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)A334 (1f60A)L246 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1f60A)D250 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :I 1f60A 245 :R T0547 335 :PVL 1f60A 247 :PLQ T0547 339 :LFS 1f60A 251 :VYK Number of specific fragments extracted= 3 number of extra gaps= 2 total=69027 # 1n4wA.333.241 read from T0547.t04.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)I333 (1n4wA)L247 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1n4wA)Q249 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1n4wA 248 :H T0547 336 :VLELFS 1n4wA 250 :VKTIRQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=69029 # 1i8dA.333.8 read from T0547.t04.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E338 (1i8dA)S14 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IAPVL 1i8dA 9 :TAKLV T0547 339 :LFS 1i8dA 15 :IDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=69031 # 2f1lA.333.22 read from T0547.t04.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)A334 (2f1lA)G12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (2f1lA)K13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2f1lA)S16 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :I 2f1lA 11 :I T0547 336 :VL 2f1lA 14 :IV T0547 339 :LFS 2f1lA 17 :VYG Number of specific fragments extracted= 3 number of extra gaps= 2 total=69034 # 1w61A.333.333 read from T0547.t04.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)P335 (1w61A)R336 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1w61A)G339 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1w61A 334 :QG T0547 336 :VL 1w61A 337 :VL T0547 339 :LFS 1w61A 340 :EER Number of specific fragments extracted= 3 number of extra gaps= 2 total=69037 # 1jbwA.333.224 read from T0547.t04.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)P335 (1jbwA)S227 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1jbwA)A231 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1jbwA 225 :DF T0547 336 :VLE 1jbwA 228 :VPK T0547 340 :FS 1jbwA 232 :KL Number of specific fragments extracted= 3 number of extra gaps= 2 total=69040 1quqA expands to /projects/compbio/data/pdb/1quq.pdb.gz 1quqA:# 1quqA.333.34 read from T0547.t04.many.frag # adding 1quqA to template set # found chain 1quqA in template set Warning: unaligning (T0547)P335 (1quqA)I79 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 1quqA 77 :VG T0547 336 :VLELFS 1quqA 80 :IRHAEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=69042 1xqbA expands to /projects/compbio/data/pdb/1xqb.pdb.gz 1xqbA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xqbA.333.103 read from T0547.t04.many.frag # adding 1xqbA to template set # found chain 1xqbA in template set T0547 333 :IAPVLELFS 1xqbA 104 :KVELRQVEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=69043 # 1te0A.333.21 read from T0547.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0547)E338 (1te0A)N63 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)L66 Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)L66 T0547 335 :PVL 1te0A 60 :NVY T0547 339 :L 1te0A 64 :R Number of specific fragments extracted= 2 number of extra gaps= 3 total=69045 # 1zboA.333.67 read from T0547.t04.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)P335 (1zboA)R70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1zboA)H73 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1zboA 68 :MA T0547 336 :VL 1zboA 71 :ID T0547 339 :LFS 1zboA 74 :WEA Number of specific fragments extracted= 3 number of extra gaps= 2 total=69048 1e0bA expands to /projects/compbio/data/pdb/1e0b.pdb.gz 1e0bA:# 1e0bA.333.12 read from T0547.t04.many.frag # adding 1e0bA to template set # found chain 1e0bA in template set Warning: unaligning (T0547)P335 (1e0bA)S275 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1e0bA)T278 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 1e0bA 273 :VS T0547 336 :VL 1e0bA 276 :ID T0547 339 :LFS 1e0bA 279 :IER Number of specific fragments extracted= 3 number of extra gaps= 2 total=69051 # 2f5gA.333.47 read from T0547.t04.many.frag # found chain 2f5gA in training set Warning: unaligning (T0547)I333 (2f5gA)G48 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (2f5gA)E50 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 2f5gA 49 :C T0547 336 :VLELFS 2f5gA 51 :IIALEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=69053 # 1x6oA.333.47 read from T0547.t04.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)P335 (1x6oA)K42 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 1x6oA 40 :PC T0547 336 :VLELFS 1x6oA 43 :VIDLSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69055 # 2b3gA.333.26 read from T0547.t04.many.frag # found chain 2b3gA in training set Warning: unaligning (T0547)P335 (2b3gA)Q26 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 2b3gA 24 :IL T0547 336 :VLELFS 2b3gA 27 :VINIRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=69057 # 1knwA.334.281 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)S341 (1knwA)Q289 because P (beta_P) conformation "forbidden" or filtered. T0547 334 :APVLELF 1knwA 282 :TQVRSVK T0547 342 :Q 1knwA 290 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=69059 # 1rcqA.334.236 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1rcqA 239 :VISVRDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=69060 # 7odcA.334.287 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :APVL 7odcA 288 :VNII T0547 339 :LFSQ 7odcA 293 :KKTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69062 # 1uscA.334.119 read from T0547.t04.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1uscA 120 :L T0547 336 :VLELFSQ 1uscA 122 :LLEVHTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=69064 # 2aneA.334.81 read from T0547.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 2aneA 75 :A T0547 336 :VLELFSQ 2aneA 77 :ILQMLKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69066 # 1a1x.334.85 read from T0547.t04.many.frag # found chain 1a1x in template set T0547 334 :APVLELFSQ 1a1x 86 :WQIQHHLMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=69067 # 1fl0A.334.10 read from T0547.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1fl0A 160 :G T0547 336 :VLELFSQ 1fl0A 162 :IITARKH Number of specific fragments extracted= 2 number of extra gaps= 1 total=69069 # 1pfbA.334.6 read from T0547.t04.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)P335 (1pfbA)K30 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :A 1pfbA 29 :E T0547 336 :VLELFSQ 1pfbA 31 :IIQKRVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=69071 # 1xjvA.334.160 read from T0547.t04.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1xjvA 168 :LLGKAEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=69072 # 1f60A.334.245 read from T0547.t04.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)A334 (1f60A)L246 because D (zeta) conformation "forbidden" or filtered. T0547 335 :PVLELFSQ 1f60A 247 :PLQDVYKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=69073 # 1n4wA.334.242 read from T0547.t04.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)P335 (1n4wA)Q249 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1n4wA 248 :H T0547 336 :VLELFSQ 1n4wA 250 :VKTIRQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=69075 # 1jb0E.334.20 read from T0547.t04.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)P335 (1jb0E)T22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1jb0E)T29 because P (beta_P) conformation "forbidden" or filtered. T0547 334 :A 1jb0E 21 :G T0547 336 :VL 1jb0E 23 :VA T0547 339 :LFS 1jb0E 26 :VDQ Number of specific fragments extracted= 3 number of extra gaps= 3 total=69078 # 1i8dA.334.9 read from T0547.t04.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E338 (1i8dA)S14 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :APVL 1i8dA 10 :AKLV T0547 339 :LFSQ 1i8dA 15 :IDEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=69080 # 1lmiA.334.25 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1lmiA 26 :W T0547 336 :VLELFSQ 1lmiA 28 :VSDLKSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=69082 # 1zd7A.334.124 read from T0547.t04.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)E338 (1zd7A)G129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1zd7A)R130 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :APVL 1zd7A 125 :VKVI T0547 340 :FSQ 1zd7A 131 :RSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69084 # 1br9.334.20 read from T0547.t04.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :A 1br9 21 :A T0547 336 :VL 1br9 23 :AV T0547 339 :LFSQ 1br9 26 :EKEV Number of specific fragments extracted= 3 number of extra gaps= 2 total=69087 # 1jbwA.334.225 read from T0547.t04.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)P335 (1jbwA)S227 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1jbwA)A231 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :A 1jbwA 226 :F T0547 336 :VLE 1jbwA 228 :VPK T0547 340 :FSQ 1jbwA 232 :KLH Number of specific fragments extracted= 3 number of extra gaps= 2 total=69090 # 1c8uA.334.74 read from T0547.t04.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1c8uA)D83 because D (zeta) conformation "forbidden" or filtered. T0547 334 :A 1c8uA 76 :Y T0547 336 :VLELF 1c8uA 78 :VETLR T0547 342 :Q 1c8uA 84 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=69093 # 1l1oC.334.30 read from T0547.t04.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)A334 (1l1oC)A466 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1l1oC)Y470 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1l1oC)K473 because G (3-10) conformation "forbidden" or filtered. T0547 336 :VL 1l1oC 468 :VV T0547 339 :LF 1l1oC 471 :LR T0547 342 :Q 1l1oC 474 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=69096 # 1quqA.334.35 read from T0547.t04.many.frag # found chain 1quqA in template set Warning: unaligning (T0547)A334 (1quqA)G78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1quqA)I79 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1quqA 80 :IRHAEKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=69097 # 2f1lA.334.23 read from T0547.t04.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)A334 (2f1lA)G12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (2f1lA)K13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2f1lA)S16 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 2f1lA 14 :IV T0547 339 :LFSQ 2f1lA 17 :VYGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=69099 # 1n7zA.334.130 read from T0547.t04.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1n7zA)D135 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :A 1n7zA 131 :Y T0547 336 :VL 1n7zA 133 :CL T0547 339 :LFSQ 1n7zA 136 :VPDT Number of specific fragments extracted= 3 number of extra gaps= 2 total=69102 # 1w61A.334.334 read from T0547.t04.many.frag # found chain 1w61A in template set Warning: unaligning (T0547)P335 (1w61A)R336 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1w61A 335 :G T0547 336 :VLELFSQ 1w61A 337 :VLGEERI Number of specific fragments extracted= 2 number of extra gaps= 1 total=69104 1jg5A expands to /projects/compbio/data/pdb/1jg5.pdb.gz 1jg5A:# 1jg5A.334.63 read from T0547.t04.many.frag # adding 1jg5A to template set # found chain 1jg5A in template set Warning: unaligning (T0547)P335 (1jg5A)R65 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1jg5A 64 :F T0547 336 :VLELFSQ 1jg5A 66 :VLSMTGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69106 # 2f5gA.334.48 read from T0547.t04.many.frag # found chain 2f5gA in training set Warning: unaligning (T0547)P335 (2f5gA)E50 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 2f5gA 49 :C T0547 336 :VLELFSQ 2f5gA 51 :IIALEVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=69108 # 1xqbA.334.104 read from T0547.t04.many.frag # found chain 1xqbA in template set T0547 334 :APVLELFSQ 1xqbA 105 :VELRQVECI Number of specific fragments extracted= 1 number of extra gaps= 0 total=69109 # 1te0A.334.22 read from T0547.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)L66 Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)L66 T0547 335 :PVLEL 1te0A 60 :NVYNR T0547 342 :Q 1te0A 67 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=69111 # 1p3dA.334.256 read from T0547.t04.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)A334 (1p3dA)Y257 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1p3dA)D261 because L (left) conformation "forbidden" or filtered. T0547 335 :PVL 1p3dA 258 :RIE T0547 339 :LFSQ 1p3dA 262 :YEQT Number of specific fragments extracted= 2 number of extra gaps= 2 total=69113 # 1e0bA.334.13 read from T0547.t04.many.frag # found chain 1e0bA in template set Warning: unaligning (T0547)P335 (1e0bA)S275 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :A 1e0bA 274 :S T0547 336 :VLELFSQ 1e0bA 276 :IDTIERK Number of specific fragments extracted= 2 number of extra gaps= 1 total=69115 # 1oxxK.334.298 read from T0547.t04.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)P335 (1oxxK)K300 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1oxxK 299 :G T0547 336 :VLELFSQ 1oxxK 301 :VKVIGYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=69117 # 1knwA.335.282 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q342 (1knwA)M290 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1knwA)G291 because S (epsilon) conformation "forbidden" or filtered. T0547 335 :PVLELFS 1knwA 283 :QVRSVKQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=69118 # 1rcqA.335.237 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1rcqA)P246 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1rcqA 239 :VISVRDL Number of specific fragments extracted= 1 number of extra gaps= 2 total=69119 # 1uscA.335.120 read from T0547.t04.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)P335 (1uscA)E121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1uscA)G129 because S (epsilon) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1uscA 122 :LLEVHTF Number of specific fragments extracted= 1 number of extra gaps= 2 total=69120 # 1xjvA.335.161 read from T0547.t04.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1xjvA 168 :LLGKAEVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=69121 # 1a1x.335.86 read from T0547.t04.many.frag # found chain 1a1x in template set Warning: unaligning (T0547)E338 (1a1x)H90 because Y (epsilon') conformation "forbidden" or filtered. T0547 335 :PVL 1a1x 87 :QIQ T0547 339 :LFSQE 1a1x 91 :HLMVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=69123 # 1pfbA.335.7 read from T0547.t04.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)P335 (1pfbA)K30 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1pfbA 31 :IIQKRVK Number of specific fragments extracted= 1 number of extra gaps= 2 total=69124 # 7odcA.335.288 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 T0547 335 :PVL 7odcA 289 :NII T0547 339 :LFSQ 7odcA 293 :KKTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69126 # 1fl0A.335.11 read from T0547.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1fl0A 162 :IITARKHP Number of specific fragments extracted= 1 number of extra gaps= 1 total=69127 # 2aneA.335.82 read from T0547.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (2aneA)K82 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VLELF 2aneA 77 :ILQML T0547 342 :QE 2aneA 83 :LP Number of specific fragments extracted= 2 number of extra gaps= 2 total=69129 # 1i8dA.335.10 read from T0547.t04.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E338 (1i8dA)S14 because Y (epsilon') conformation "forbidden" or filtered. T0547 335 :PVL 1i8dA 11 :KLV T0547 339 :LFSQE 1i8dA 15 :IDEKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=69131 # 1jb0E.335.21 read from T0547.t04.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)P335 (1jb0E)T22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1jb0E)P30 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VL 1jb0E 23 :VA T0547 339 :LFSQ 1jb0E 26 :VDQT Number of specific fragments extracted= 2 number of extra gaps= 3 total=69133 # 1zd7A.335.125 read from T0547.t04.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)E338 (1zd7A)G129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1zd7A)G134 because S (epsilon) conformation "forbidden" or filtered. T0547 335 :PVL 1zd7A 126 :KVI T0547 339 :LFSQ 1zd7A 130 :RRSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=69135 # 1n4wA.335.243 read from T0547.t04.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)P335 (1n4wA)Q249 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1n4wA 250 :VKTIRQTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=69136 # 1f60A.335.246 read from T0547.t04.many.frag # found chain 1f60A in training set T0547 335 :PVLELFSQE 1f60A 247 :PLQDVYKIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=69137 # 1quqA.335.36 read from T0547.t04.many.frag # found chain 1quqA in template set Warning: unaligning (T0547)P335 (1quqA)I79 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1quqA 80 :IRHAEKAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=69138 # 1lmiA.335.26 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. T0547 336 :V 1lmiA 28 :V T0547 339 :LFSQE 1lmiA 31 :LKSST Number of specific fragments extracted= 2 number of extra gaps= 2 total=69140 # 2f1lA.335.24 read from T0547.t04.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)P335 (2f1lA)K13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2f1lA)S16 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (2f1lA)G19 because S (epsilon) conformation "forbidden" or filtered. T0547 336 :VL 2f1lA 14 :IV T0547 339 :LF 2f1lA 17 :VY T0547 342 :QE 2f1lA 20 :IR Number of specific fragments extracted= 3 number of extra gaps= 3 total=69143 # 1nqeA.335.152 read from T0547.t04.many.frag # found chain 1nqeA in template set Warning: unaligning (T0547)P335 (1nqeA)D153 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1nqeA 154 :VSTQQQLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=69144 # 3prn.335.33 read from T0547.t04.many.frag # found chain 3prn in template set Warning: unaligning (T0547)P335 (3prn)N34 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 3prn 35 :IVGTTETD Number of specific fragments extracted= 1 number of extra gaps= 1 total=69145 # 1jbwA.335.226 read from T0547.t04.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)P335 (1jbwA)S227 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1jbwA)G235 because S (epsilon) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1jbwA 228 :VPKAKLH Number of specific fragments extracted= 1 number of extra gaps= 2 total=69146 # 1br9.335.21 read from T0547.t04.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1br9 23 :AVSEKEVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=69147 # 1e0bA.335.14 read from T0547.t04.many.frag # found chain 1e0bA in template set Warning: unaligning (T0547)P335 (1e0bA)S275 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1e0bA 276 :IDTIERKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=69148 # 1c8uA.335.75 read from T0547.t04.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1c8uA 78 :VETLRDGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=69149 # 1gmlA.335.139 read from T0547.t04.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)P335 (1gmlA)G348 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1gmlA)G356 because S (epsilon) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1gmlA 349 :LLEIKKI Number of specific fragments extracted= 1 number of extra gaps= 2 total=69150 # 1xqbA.335.105 read from T0547.t04.many.frag # found chain 1xqbA in template set Warning: unaligning (T0547)Q342 (1xqbA)I113 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1xqbA)N114 because L (left) conformation "forbidden" or filtered. T0547 335 :PVLELFS 1xqbA 106 :ELRQVEC Number of specific fragments extracted= 1 number of extra gaps= 1 total=69151 # 1jg5A.335.64 read from T0547.t04.many.frag # found chain 1jg5A in template set Warning: unaligning (T0547)P335 (1jg5A)R65 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1jg5A)S68 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1jg5A 66 :VL T0547 339 :LFSQE 1jg5A 69 :MTGVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=69153 # 1e42A.335.194 read from T0547.t04.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)E338 (1e42A)A877 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1e42A)V881 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1e42A)E882 because L (left) conformation "forbidden" or filtered. T0547 335 :PVL 1e42A 874 :YTI T0547 339 :LFS 1e42A 878 :KRN Number of specific fragments extracted= 2 number of extra gaps= 2 total=69155 # 1v8qA.335.64 read from T0547.t04.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)P335 (1v8qA)G65 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1v8qA 66 :VVEFQDRG Number of specific fragments extracted= 1 number of extra gaps= 1 total=69156 # 1oxxK.335.299 read from T0547.t04.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)P335 (1oxxK)K300 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1oxxK 301 :VKVIGYQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=69157 # 1p3dA.335.257 read from T0547.t04.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)E338 (1p3dA)D261 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1p3dA)G266 because S (epsilon) conformation "forbidden" or filtered. T0547 335 :PVL 1p3dA 258 :RIE T0547 339 :LFSQ 1p3dA 262 :YEQT Number of specific fragments extracted= 2 number of extra gaps= 2 total=69159 # 1knwA.336.283 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E338 (1knwA)S286 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VL 1knwA 284 :VR T0547 339 :LFSQEY 1knwA 287 :VKQMGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=69161 # 1rcqA.336.238 read from T0547.t04.many.frag # found chain 1rcqA in training set T0547 336 :VLELFSQEY 1rcqA 239 :VISVRDLPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=69162 # 1xjvA.336.162 read from T0547.t04.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)E338 (1xjvA)G170 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1xjvA)E173 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1xjvA)G176 because T (delta_L) conformation "forbidden" or filtered. T0547 336 :VL 1xjvA 168 :LL T0547 339 :LF 1xjvA 171 :KA T0547 342 :QE 1xjvA 174 :VD Number of specific fragments extracted= 3 number of extra gaps= 3 total=69165 # 1pfbA.336.8 read from T0547.t04.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. T0547 336 :VL 1pfbA 31 :II T0547 339 :LFSQ 1pfbA 34 :KRVK T0547 344 :Y 1pfbA 39 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=69168 # 1i8dA.336.11 read from T0547.t04.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E338 (1i8dA)S14 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1i8dA 12 :LV T0547 339 :LFSQEY 1i8dA 15 :IDEKPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=69170 # 1uscA.336.121 read from T0547.t04.many.frag # found chain 1uscA in training set T0547 336 :VLELFSQEY 1uscA 122 :LLEVHTFGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=69171 # 1a1x.336.87 read from T0547.t04.many.frag # found chain 1a1x in template set Warning: unaligning (T0547)E338 (1a1x)H90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1a1x)R95 because L (left) conformation "forbidden" or filtered. T0547 336 :VL 1a1x 88 :IQ T0547 339 :LFSQ 1a1x 91 :HLMV T0547 344 :Y 1a1x 96 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=69174 # 1jb0E.336.22 read from T0547.t04.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1jb0E 23 :VA T0547 339 :LFSQEY 1jb0E 26 :VDQTPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=69176 # 1n4wA.336.244 read from T0547.t04.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)Q342 (1n4wA)T256 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VLELFS 1n4wA 250 :VKTIRQ T0547 343 :EY 1n4wA 257 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=69178 # 2aneA.336.83 read from T0547.t04.many.frag # found chain 2aneA in template set T0547 336 :VLELFSQEY 2aneA 77 :ILQMLKLPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=69179 # 1fl0A.336.12 read from T0547.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)Q342 (1fl0A)H168 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VLELFS 1fl0A 162 :IITARK T0547 343 :EY 1fl0A 169 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=69181 # 1zd7A.336.126 read from T0547.t04.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)E338 (1zd7A)G129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1zd7A)R130 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1zd7A 127 :VI T0547 340 :FSQEY 1zd7A 131 :RSLGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69183 # 1f60A.336.247 read from T0547.t04.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E343 (1f60A)G255 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1f60A 248 :LQDVYKI T0547 344 :Y 1f60A 256 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=69185 # 1nqeA.336.153 read from T0547.t04.many.frag # found chain 1nqeA in template set Warning: unaligning (T0547)E343 (1nqeA)G161 because S (epsilon) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1nqeA 154 :VSTQQQL T0547 344 :Y 1nqeA 162 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=69187 # 3prn.336.34 read from T0547.t04.many.frag # found chain 3prn in template set Warning: unaligning (T0547)E338 (3prn)G37 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VL 3prn 35 :IV T0547 339 :LFSQEY 3prn 38 :TTETDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=69189 # 1quqA.336.37 read from T0547.t04.many.frag # found chain 1quqA in template set Warning: unaligning (T0547)Y344 (1quqA)T88 because G (3-10) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1quqA 80 :IRHAEKAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=69190 # 2f1lA.336.25 read from T0547.t04.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)S341 (2f1lA)G19 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (2f1lA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 336 :VLELF 2f1lA 14 :IVSVY T0547 342 :QE 2f1lA 20 :IR Number of specific fragments extracted= 2 number of extra gaps= 2 total=69192 # 1v8qA.336.65 read from T0547.t04.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)E338 (1v8qA)E68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1v8qA)D71 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VL 1v8qA 66 :VV T0547 339 :LF 1v8qA 69 :FQ T0547 342 :QEY 1v8qA 72 :RGR Number of specific fragments extracted= 3 number of extra gaps= 2 total=69195 # 1gmlA.336.140 read from T0547.t04.many.frag # found chain 1gmlA in template set T0547 336 :VLELFSQEY 1gmlA 349 :LLEIKKIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=69196 # 1jg5A.336.65 read from T0547.t04.many.frag # found chain 1jg5A in template set Warning: unaligning (T0547)E338 (1jg5A)S68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1jg5A)G73 because S (epsilon) conformation "forbidden" or filtered. T0547 336 :VL 1jg5A 66 :VL T0547 339 :LFSQ 1jg5A 69 :MTGV T0547 344 :Y 1jg5A 74 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=69199 # 1xqbA.336.106 read from T0547.t04.many.frag # found chain 1xqbA in template set Warning: unaligning (T0547)E343 (1xqbA)N114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1xqbA)G115 because L (left) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1xqbA 107 :LRQVECI Number of specific fragments extracted= 1 number of extra gaps= 1 total=69200 # 1e0bA.336.15 read from T0547.t04.many.frag # found chain 1e0bA in template set T0547 336 :VLELFSQEY 1e0bA 276 :IDTIERKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=69201 # 7odcA.336.289 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 T0547 336 :VL 7odcA 290 :II T0547 339 :LFSQ 7odcA 293 :KKTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69203 # 1e42A.336.195 read from T0547.t04.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)E338 (1e42A)A877 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1e42A 875 :TI T0547 339 :LFSQEY 1e42A 878 :KRNVEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=69205 # 1jbwA.336.227 read from T0547.t04.many.frag # found chain 1jbwA in template set T0547 336 :VLELFSQEY 1jbwA 228 :VPKAKLHGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=69206 # 1el6A.336.142 read from T0547.t04.many.frag # found chain 1el6A in template set Warning: unaligning (T0547)E338 (1el6A)S145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1el6A)H149 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VL 1el6A 143 :IN T0547 339 :LFS 1el6A 146 :YKD T0547 343 :EY 1el6A 150 :PT Number of specific fragments extracted= 3 number of extra gaps= 2 total=69209 # 2ffmA.336.2 read from T0547.t04.many.frag # found chain 2ffmA in template set Warning: unaligning (T0547)Q342 (2ffmA)T9 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFS 2ffmA 3 :IISISE T0547 343 :EY 2ffmA 10 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=69211 1t95A expands to /projects/compbio/data/pdb/1t95.pdb.gz 1t95A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1t95A.336.193 read from T0547.t04.many.frag # adding 1t95A to template set # found chain 1t95A in template set Warning: unaligning (T0547)E338 (1t95A)R196 because L (left) conformation "forbidden" or filtered. T0547 336 :VL 1t95A 194 :VT T0547 339 :LFSQEY 1t95A 197 :EEWQRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=69213 # 1oxxK.336.300 read from T0547.t04.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)E338 (1oxxK)V303 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1oxxK)G308 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1oxxK)G309 because T (delta_L) conformation "forbidden" or filtered. T0547 336 :VL 1oxxK 301 :VK T0547 339 :LFSQ 1oxxK 304 :IGYQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=69215 # 1vqoA.336.42 read from T0547.t04.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)E338 (1vqoA)D44 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1vqoA 42 :VV T0547 339 :LFSQEY 1vqoA 45 :IEHDPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=69217 # 1knwA.337.284 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)F340 (1knwA)K288 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :LEL 1knwA 285 :RSV T0547 341 :SQEYA 1knwA 289 :QMGSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=69219 # 1xjvA.337.163 read from T0547.t04.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)Y344 (1xjvA)G176 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :LELFSQE 1xjvA 169 :LGKAEVD T0547 345 :A 1xjvA 177 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=69221 # 2aneA.337.84 read from T0547.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)A345 (2aneA)G86 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :LELFSQEY 2aneA 78 :LQMLKLPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=69222 # 1jb0E.337.23 read from T0547.t04.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :L 1jb0E 24 :A T0547 339 :LFSQEYA 1jb0E 26 :VDQTPGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69224 # 1pfbA.337.9 read from T0547.t04.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. T0547 337 :L 1pfbA 32 :I T0547 339 :LFSQ 1pfbA 34 :KRVK T0547 344 :YA 1pfbA 39 :GV Number of specific fragments extracted= 3 number of extra gaps= 2 total=69227 # 1i8dA.337.12 read from T0547.t04.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E338 (1i8dA)S14 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1i8dA)E17 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1i8dA)F21 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :L 1i8dA 13 :V T0547 339 :LF 1i8dA 15 :ID T0547 342 :QEY 1i8dA 18 :KPN Number of specific fragments extracted= 3 number of extra gaps= 3 total=69230 # 1a1x.337.88 read from T0547.t04.many.frag # found chain 1a1x in template set Warning: unaligning (T0547)E343 (1a1x)R95 because L (left) conformation "forbidden" or filtered. T0547 337 :LELFSQ 1a1x 89 :QHHLMV T0547 344 :YA 1a1x 96 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69232 # 1uscA.337.122 read from T0547.t04.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)E338 (1uscA)E124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1uscA)H131 because E (beta_S) conformation "forbidden" or filtered. T0547 337 :L 1uscA 123 :L T0547 339 :LFSQEY 1uscA 125 :VHTFGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=69234 # 1rcqA.337.239 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A345 (1rcqA)G248 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :LELFSQEY 1rcqA 240 :ISVRDLPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=69235 # 1fl0A.337.13 read from T0547.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)Q342 (1fl0A)H168 because P (beta_P) conformation "forbidden" or filtered. T0547 337 :LELFS 1fl0A 163 :ITARK T0547 343 :EYA 1fl0A 169 :PDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=69237 # 1n4wA.337.245 read from T0547.t04.many.frag # found chain 1n4wA in training set T0547 337 :LELFSQEYA 1n4wA 251 :KTIRQTKDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=69238 # 1f60A.337.248 read from T0547.t04.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E338 (1f60A)D250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1f60A)G256 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :L 1f60A 249 :Q T0547 339 :LFSQE 1f60A 251 :VYKIG T0547 345 :A 1f60A 257 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=69241 # 1nqeA.337.154 read from T0547.t04.many.frag # found chain 1nqeA in template set Warning: unaligning (T0547)A345 (1nqeA)K163 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :LELFSQEY 1nqeA 155 :STQQQLGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=69242 # 1gmlA.337.141 read from T0547.t04.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)E343 (1gmlA)G356 because S (epsilon) conformation "forbidden" or filtered. T0547 337 :LELFSQ 1gmlA 350 :LEIKKI T0547 344 :YA 1gmlA 357 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=69244 # 1v8qA.337.66 read from T0547.t04.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)E343 (1v8qA)G73 because S (epsilon) conformation "forbidden" or filtered. T0547 337 :LELFSQ 1v8qA 67 :VEFQDR T0547 344 :YA 1v8qA 74 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69246 # 1xqbA.337.107 read from T0547.t04.many.frag # found chain 1xqbA in template set Warning: unaligning (T0547)E343 (1xqbA)N114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1xqbA)G115 because L (left) conformation "forbidden" or filtered. T0547 337 :LELFSQ 1xqbA 108 :RQVECI T0547 345 :A 1xqbA 116 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=69248 # 1e0bA.337.16 read from T0547.t04.many.frag # found chain 1e0bA in template set T0547 337 :LELFSQEYA 1e0bA 277 :DTIERKDDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=69249 # 1jg5A.337.66 read from T0547.t04.many.frag # found chain 1jg5A in template set Warning: unaligning (T0547)E338 (1jg5A)S68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1jg5A)G73 because S (epsilon) conformation "forbidden" or filtered. T0547 337 :L 1jg5A 67 :L T0547 339 :LFSQ 1jg5A 69 :MTGV T0547 344 :YA 1jg5A 74 :QT Number of specific fragments extracted= 3 number of extra gaps= 2 total=69252 # 1quqA.337.38 read from T0547.t04.many.frag # found chain 1quqA in template set T0547 337 :LELFSQEYA 1quqA 81 :RHAEKAPTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=69253 # 1el6A.337.143 read from T0547.t04.many.frag # found chain 1el6A in template set T0547 337 :LELFSQEYA 1el6A 144 :NSYKDHPTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=69254 # 1r7mA.337.186 read from T0547.t04.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)E338 (1r7mA)Y188 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1r7mA)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. T0547 337 :L 1r7mA 187 :C T0547 339 :LFSQ 1r7mA 189 :VKIN T0547 345 :A 1r7mA 195 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=69257 # 1zd7A.337.127 read from T0547.t04.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)E338 (1zd7A)G129 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :L 1zd7A 128 :I T0547 339 :LFSQEYA 1zd7A 130 :RRSLGVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=69259 # 2f1lA.337.26 read from T0547.t04.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)E338 (2f1lA)S16 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :L 2f1lA 15 :V T0547 339 :LFSQEYA 2f1lA 17 :VYGIRGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=69261 # 2ffmA.337.3 read from T0547.t04.many.frag # found chain 2ffmA in template set T0547 337 :LELFSQEYA 2ffmA 4 :ISISETPNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=69262 # 1t95A.337.194 read from T0547.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)E338 (1t95A)R196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1t95A)W199 because P (beta_P) conformation "forbidden" or filtered. T0547 337 :L 1t95A 195 :T T0547 339 :LF 1t95A 197 :EE T0547 342 :QEYA 1t95A 200 :QRDG Number of specific fragments extracted= 3 number of extra gaps= 2 total=69265 # 3prn.337.35 read from T0547.t04.many.frag # found chain 3prn in template set T0547 337 :LELFSQEYA 3prn 36 :VGTTETDQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=69266 # 1e42A.337.196 read from T0547.t04.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)E338 (1e42A)A877 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :L 1e42A 876 :I T0547 339 :LFSQEYA 1e42A 878 :KRNVEGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=69268 # 1c4qA.337.9 read from T0547.t04.many.frag # found chain 1c4qA in training set Warning: unaligning (T0547)E338 (1c4qA)Y111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1c4qA)N115 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1c4qA)D118 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :L 1c4qA 110 :E T0547 339 :LFS 1c4qA 112 :TKY T0547 343 :EY 1c4qA 116 :DD Number of specific fragments extracted= 3 number of extra gaps= 3 total=69271 # 1jbwA.337.228 read from T0547.t04.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)L339 (1jbwA)A231 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1jbwA)G235 because S (epsilon) conformation "forbidden" or filtered. T0547 337 :LE 1jbwA 229 :PK T0547 340 :FSQ 1jbwA 232 :KLH T0547 344 :YA 1jbwA 236 :WG Number of specific fragments extracted= 3 number of extra gaps= 2 total=69274 # 1oxxK.337.301 read from T0547.t04.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)E343 (1oxxK)G308 because L (left) conformation "forbidden" or filtered. T0547 337 :LELFSQ 1oxxK 302 :KVIGYQ T0547 344 :YA 1oxxK 309 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69276 # 2aneA.338.85 read from T0547.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)A345 (2aneA)G86 because T (delta_L) conformation "forbidden" or filtered. T0547 338 :ELFSQEY 2aneA 79 :QMLKLPD T0547 346 :E 2aneA 87 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=69278 # 1pfbA.338.10 read from T0547.t04.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. T0547 339 :LFSQEYAE 1pfbA 34 :KRVKKGVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=69279 # 1xjvA.338.164 read from T0547.t04.many.frag # found chain 1xjvA in training set T0547 338 :ELFSQEYAE 1xjvA 170 :GKAEVDGAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=69280 # 1jb0E.338.24 read from T0547.t04.many.frag # found chain 1jb0E in template set T0547 338 :ELFSQEYAE 1jb0E 25 :SVDQTPGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=69281 # 1a1x.338.89 read from T0547.t04.many.frag # found chain 1a1x in template set Warning: unaligning (T0547)E338 (1a1x)H90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1a1x)M93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1a1x)G96 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1a1x)Q98 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LF 1a1x 91 :HL T0547 342 :QE 1a1x 94 :VR T0547 345 :A 1a1x 97 :V Number of specific fragments extracted= 3 number of extra gaps= 4 total=69284 # 1knwA.338.285 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 338 :ELFSQEYAE 1knwA 286 :SVKQMGSRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=69285 # 1f60A.338.249 read from T0547.t04.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E338 (1f60A)D250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1f60A)G255 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1f60A)G256 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1f60A)G258 because S (epsilon) conformation "forbidden" or filtered. T0547 339 :LFSQ 1f60A 251 :VYKI T0547 345 :A 1f60A 257 :I Number of specific fragments extracted= 2 number of extra gaps= 3 total=69287 # 1n4wA.338.246 read from T0547.t04.many.frag # found chain 1n4wA in training set T0547 338 :ELFSQEYAE 1n4wA 252 :TIRQTKDGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=69288 # 1fl0A.338.14 read from T0547.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)A345 (1fl0A)A171 because D (zeta) conformation "forbidden" or filtered. T0547 338 :ELFSQEY 1fl0A 164 :TARKHPD T0547 346 :E 1fl0A 172 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=69290 # 1uscA.338.123 read from T0547.t04.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)E338 (1uscA)E124 because Y (epsilon') conformation "forbidden" or filtered. T0547 339 :LFSQEYAE 1uscA 125 :VHTFGDHD Number of specific fragments extracted= 1 number of extra gaps= 1 total=69291 # 1gmlA.338.142 read from T0547.t04.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)E343 (1gmlA)G356 because S (epsilon) conformation "forbidden" or filtered. T0547 338 :ELFSQ 1gmlA 351 :EIKKI T0547 344 :YAE 1gmlA 357 :DEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=69293 # 1i8dA.338.13 read from T0547.t04.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E338 (1i8dA)S14 because Y (epsilon') conformation "forbidden" or filtered. T0547 339 :LFSQEYAE 1i8dA 15 :IDEKPNFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=69294 # 1v8qA.338.67 read from T0547.t04.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)E346 (1v8qA)G76 because S (epsilon) conformation "forbidden" or filtered. T0547 338 :ELFSQEYA 1v8qA 68 :EFQDRGRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=69295 # 1nqeA.338.155 read from T0547.t04.many.frag # found chain 1nqeA in template set Warning: unaligning (T0547)E343 (1nqeA)G161 because S (epsilon) conformation "forbidden" or filtered. T0547 338 :ELFSQ 1nqeA 156 :TQQQL T0547 344 :YAE 1nqeA 162 :DKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=69297 # 1xqbA.338.108 read from T0547.t04.many.frag # found chain 1xqbA in template set Warning: unaligning (T0547)E343 (1xqbA)N114 because L (left) conformation "forbidden" or filtered. T0547 338 :ELFSQ 1xqbA 109 :QVECI T0547 344 :YAE 1xqbA 115 :GNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=69299 # 1e0bA.338.17 read from T0547.t04.many.frag # found chain 1e0bA in template set T0547 338 :ELFSQEYAE 1e0bA 278 :TIERKDDGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=69300 # 1t95A.338.195 read from T0547.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)E338 (1t95A)R196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1t95A)S204 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFSQEYA 1t95A 197 :EEWQRDG Number of specific fragments extracted= 1 number of extra gaps= 2 total=69301 # 1jg5A.338.67 read from T0547.t04.many.frag # found chain 1jg5A in template set Warning: unaligning (T0547)E338 (1jg5A)S68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1jg5A)L76 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFSQEYA 1jg5A 69 :MTGVGQT Number of specific fragments extracted= 1 number of extra gaps= 2 total=69302 # 1rcqA.338.240 read from T0547.t04.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A345 (1rcqA)G248 because T (delta_L) conformation "forbidden" or filtered. T0547 338 :ELFSQEY 1rcqA 241 :SVRDLPA T0547 346 :E 1rcqA 249 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=69304 # 1e42A.338.197 read from T0547.t04.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)E338 (1e42A)A877 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1e42A)E882 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1e42A)G883 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQ 1e42A 878 :KRNV T0547 345 :AE 1e42A 884 :QD Number of specific fragments extracted= 2 number of extra gaps= 2 total=69306 # 1el6A.338.144 read from T0547.t04.many.frag # found chain 1el6A in template set Warning: unaligning (T0547)E338 (1el6A)S145 because Y (epsilon') conformation "forbidden" or filtered. T0547 339 :LFSQEYAE 1el6A 146 :YKDHPTDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=69307 # 1r7mA.338.187 read from T0547.t04.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)F340 (1r7mA)K190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1r7mA)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1r7mA)P196 because P (beta_P) conformation "forbidden" or filtered. T0547 338 :EL 1r7mA 188 :YV T0547 341 :SQ 1r7mA 191 :IN T0547 344 :YA 1r7mA 194 :NK Number of specific fragments extracted= 3 number of extra gaps= 3 total=69310 # 1gesA.338.232 read from T0547.t04.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)E338 (1gesA)A233 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1gesA)G240 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQEY 1gesA 234 :VVKNTD T0547 346 :E 1gesA 241 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=69312 # 1c4qA.338.10 read from T0547.t04.many.frag # found chain 1c4qA in training set Warning: unaligning (T0547)Y344 (1c4qA)D117 because G (3-10) conformation "forbidden" or filtered. T0547 338 :ELFSQE 1c4qA 111 :YTKYND T0547 345 :AE 1c4qA 118 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=69314 # 1quqA.338.39 read from T0547.t04.many.frag # found chain 1quqA in template set T0547 338 :ELFSQEYAE 1quqA 82 :HAEKAPTNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=69315 1iznA expands to /projects/compbio/data/pdb/1izn.pdb.gz 1iznA:# 1iznA.338.143 read from T0547.t04.many.frag # adding 1iznA to template set # found chain 1iznA in template set Warning: unaligning (T0547)E343 (1iznA)D149 because L (left) conformation "forbidden" or filtered. T0547 338 :ELFSQ 1iznA 144 :YGKSI T0547 344 :YAE 1iznA 150 :GQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=69317 # 1w4sA.338.50 read from T0547.t04.many.frag # found chain 1w4sA in training set T0547 338 :ELFSQEYAE 1w4sA 980 :RLWEDSAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=69318 # 2ffmA.338.4 read from T0547.t04.many.frag # found chain 2ffmA in template set T0547 338 :ELFSQEYAE 2ffmA 5 :SISETPNHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=69319 # 1yj7A.338.28 read from T0547.t04.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)A345 (1yj7A)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 338 :ELFSQEY 1yj7A 48 :SKEMDKS T0547 346 :E 1yj7A 56 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=69321 # 1jbwA.338.229 read from T0547.t04.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)E346 (1jbwA)Q238 because E (beta_S) conformation "forbidden" or filtered. T0547 338 :ELFSQEYA 1jbwA 230 :KAKLHGWG Number of specific fragments extracted= 1 number of extra gaps= 1 total=69322 # 2aneA.339.86 read from T0547.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)A345 (2aneA)G86 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQEY 2aneA 80 :MLKLPD T0547 346 :EN 2aneA 87 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69324 # 1jb0E.339.25 read from T0547.t04.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)Y344 (1jb0E)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQE 1jb0E 26 :VDQTP T0547 345 :AEN 1jb0E 32 :VKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=69326 # 1f60A.339.250 read from T0547.t04.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)Q342 (1f60A)I254 because E (beta_S) conformation "forbidden" or filtered. T0547 339 :LFS 1f60A 251 :VYK T0547 343 :EYAEN 1f60A 255 :GGIGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=69328 # 1pfbA.339.11 read from T0547.t04.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)Q342 (1pfbA)K37 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1pfbA)G39 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFS 1pfbA 34 :KRV T0547 345 :AEN 1pfbA 40 :VVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=69330 # 1xjvA.339.165 read from T0547.t04.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)Y344 (1xjvA)G176 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQE 1xjvA 171 :KAEVD T0547 345 :AEN 1xjvA 177 :ASF Number of specific fragments extracted= 2 number of extra gaps= 1 total=69332 # 1a1x.339.90 read from T0547.t04.many.frag # found chain 1a1x in template set Warning: unaligning (T0547)E346 (1a1x)Q98 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFSQEYA 1a1x 91 :HLMVRGV T0547 347 :N 1a1x 99 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=69334 # 1gmlA.339.143 read from T0547.t04.many.frag # found chain 1gmlA in template set T0547 339 :LFSQEYAEN 1gmlA 352 :IKKIGDEYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=69335 # 1n4wA.339.247 read from T0547.t04.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)E346 (1n4wA)G260 because S (epsilon) conformation "forbidden" or filtered. T0547 339 :LFSQEYA 1n4wA 253 :IRQTKDG T0547 347 :N 1n4wA 261 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=69337 # 1fl0A.339.15 read from T0547.t04.many.frag # found chain 1fl0A in training set T0547 339 :LFSQEYAEN 1fl0A 165 :ARKHPDADS Number of specific fragments extracted= 1 number of extra gaps= 0 total=69338 # 1uscA.339.124 read from T0547.t04.many.frag # found chain 1uscA in training set T0547 339 :LFSQEYAEN 1uscA 125 :VHTFGDHDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=69339 # 1knwA.339.286 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q342 (1knwA)M290 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1knwA)G291 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1knwA)F295 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFS 1knwA 287 :VKQ T0547 344 :YAE 1knwA 292 :SRH Number of specific fragments extracted= 2 number of extra gaps= 2 total=69341 # 1i8dA.339.14 read from T0547.t04.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)A345 (1i8dA)F21 because Y (epsilon') conformation "forbidden" or filtered. T0547 339 :LFSQEY 1i8dA 15 :IDEKPN T0547 346 :EN 1i8dA 22 :RT Number of specific fragments extracted= 2 number of extra gaps= 1 total=69343 # 1v8qA.339.68 read from T0547.t04.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)E346 (1v8qA)G76 because S (epsilon) conformation "forbidden" or filtered. T0547 339 :LFSQEYA 1v8qA 69 :FQDRGRL T0547 347 :N 1v8qA 77 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=69345 # 1e0bA.339.18 read from T0547.t04.many.frag # found chain 1e0bA in template set Warning: unaligning (T0547)N347 (1e0bA)L287 because E (beta_S) conformation "forbidden" or filtered. T0547 339 :LFSQEYAE 1e0bA 279 :IERKDDGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=69346 # 1iznA.339.144 read from T0547.t04.many.frag # found chain 1iznA in template set Warning: unaligning (T0547)E343 (1iznA)D149 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1iznA)G150 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1iznA)Q151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1iznA)Q152 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFSQ 1iznA 145 :GKSI T0547 347 :N 1iznA 153 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=69348 # 1nqeA.339.156 read from T0547.t04.many.frag # found chain 1nqeA in template set T0547 339 :LFSQEYAEN 1nqeA 157 :QQQLGDKTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=69349 # 1e42A.339.198 read from T0547.t04.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)Y344 (1e42A)G883 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQE 1e42A 878 :KRNVE T0547 345 :AEN 1e42A 884 :QDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=69351 # 1t95A.339.196 read from T0547.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)A345 (1t95A)G203 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQEY 1t95A 197 :EEWQRD T0547 346 :EN 1t95A 204 :SW Number of specific fragments extracted= 2 number of extra gaps= 1 total=69353 # 1jg5A.339.68 read from T0547.t04.many.frag # found chain 1jg5A in template set Warning: unaligning (T0547)E343 (1jg5A)G73 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1jg5A)L76 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFSQ 1jg5A 69 :MTGV T0547 344 :YA 1jg5A 74 :QT T0547 347 :N 1jg5A 77 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=69356 # 1utcA.339.40 read from T0547.t04.many.frag # found chain 1utcA in template set T0547 339 :LFSQEYAEN 1utcA 41 :REKVGEQAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=69357 # 1xqbA.339.109 read from T0547.t04.many.frag # found chain 1xqbA in template set Warning: unaligning (T0547)E343 (1xqbA)N114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1xqbA)G115 because L (left) conformation "forbidden" or filtered. T0547 339 :LFSQ 1xqbA 110 :VECI T0547 345 :AEN 1xqbA 116 :NIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=69359 # 1gesA.339.233 read from T0547.t04.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)A345 (1gesA)G240 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQEY 1gesA 234 :VVKNTD T0547 346 :EN 1gesA 241 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69361 # 1yj7A.339.29 read from T0547.t04.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)A345 (1yj7A)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1yj7A)N56 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFSQEY 1yj7A 49 :KEMDKS T0547 347 :N 1yj7A 57 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=69363 # 1r7mA.339.188 read from T0547.t04.many.frag # found chain 1r7mA in template set T0547 339 :LFSQEYAEN 1r7mA 189 :VKINKNKPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=69364 # 1el6A.339.145 read from T0547.t04.many.frag # found chain 1el6A in template set Warning: unaligning (T0547)Y344 (1el6A)T151 because G (3-10) conformation "forbidden" or filtered. T0547 339 :LFSQE 1el6A 146 :YKDHP T0547 345 :AEN 1el6A 152 :DGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=69366 # 1vraA.339.182 read from T0547.t04.many.frag # found chain 1vraA in template set Warning: unaligning (T0547)E343 (1vraA)N175 because L (left) conformation "forbidden" or filtered. T0547 339 :LFSQ 1vraA 171 :QTIV T0547 344 :YAEN 1vraA 176 :GKTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69368 # 3bamA.339.97 read from T0547.t04.many.frag # found chain 3bamA in training set Warning: unaligning (T0547)E343 (3bamA)N102 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFSQ 3bamA 98 :EFIE T0547 344 :YAEN 3bamA 103 :SELK Number of specific fragments extracted= 2 number of extra gaps= 1 total=69370 # 1t6sA.339.139 read from T0547.t04.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)Q342 (1t6sA)S143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1t6sA)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1t6sA)R146 because L (left) conformation "forbidden" or filtered. T0547 339 :LFS 1t6sA 140 :RAD T0547 343 :E 1t6sA 144 :P T0547 346 :EN 1t6sA 147 :PL Number of specific fragments extracted= 3 number of extra gaps= 2 total=69373 # 1r0pA.339.96 read from T0547.t04.many.frag # found chain 1r0pA in training set Warning: unaligning (T0547)Y344 (1r0pA)E1150 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1r0pA)G1151 because L (left) conformation "forbidden" or filtered. T0547 339 :LFSQE 1r0pA 1145 :ICLRS T0547 346 :EN 1r0pA 1152 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=69375 # 1w4sA.339.51 read from T0547.t04.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)Q342 (1w4sA)D984 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1w4sA)G987 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFS 1w4sA 981 :LWE T0547 343 :EY 1w4sA 985 :SA T0547 346 :EN 1w4sA 988 :EK Number of specific fragments extracted= 3 number of extra gaps= 2 total=69378 # 1jb0E.340.26 read from T0547.t04.many.frag # found chain 1jb0E in template set T0547 340 :FSQEYAENK 1jb0E 27 :DQTPGVKYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=69379 # 2aneA.340.87 read from T0547.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)A345 (2aneA)G86 because T (delta_L) conformation "forbidden" or filtered. T0547 340 :FSQEY 2aneA 81 :LKLPD T0547 346 :ENK 2aneA 87 :TVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=69381 # 1pfbA.340.12 read from T0547.t04.many.frag # found chain 1pfbA in training set T0547 340 :FSQEYAENK 1pfbA 35 :RVKKGVVEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=69382 # 1f60A.340.251 read from T0547.t04.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E346 (1f60A)G258 because S (epsilon) conformation "forbidden" or filtered. T0547 340 :FSQEYA 1f60A 252 :YKIGGI T0547 347 :NK 1f60A 259 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69384 # 1xjvA.340.166 read from T0547.t04.many.frag # found chain 1xjvA in training set T0547 340 :FSQEYAENK 1xjvA 172 :AEVDGASFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=69385 # 1gmlA.340.144 read from T0547.t04.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)E343 (1gmlA)G356 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1gmlA)T361 because P (beta_P) conformation "forbidden" or filtered. T0547 340 :FSQ 1gmlA 353 :KKI T0547 344 :YAEN 1gmlA 357 :DEYF Number of specific fragments extracted= 2 number of extra gaps= 2 total=69387 # 1a1x.340.91 read from T0547.t04.many.frag # found chain 1a1x in template set Warning: unaligning (T0547)E343 (1a1x)R95 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1a1x)G96 because T (delta_L) conformation "forbidden" or filtered. T0547 340 :FSQ 1a1x 92 :LMV T0547 345 :AENK 1a1x 97 :VQEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69389 # 1v8qA.340.69 read from T0547.t04.many.frag # found chain 1v8qA in template set T0547 340 :FSQEYAENK 1v8qA 70 :QDRGRLGRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=69390 # 1fl0A.340.16 read from T0547.t04.many.frag # found chain 1fl0A in training set T0547 340 :FSQEYAENK 1fl0A 166 :RKHPDADSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=69391 # 1yj7A.340.30 read from T0547.t04.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)K348 (1yj7A)T58 because E (beta_S) conformation "forbidden" or filtered. T0547 340 :FSQEYAEN 1yj7A 50 :EMDKSGNM Number of specific fragments extracted= 1 number of extra gaps= 1 total=69392 # 1n4wA.340.248 read from T0547.t04.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)Y344 (1n4wA)D258 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1n4wA)G259 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1n4wA)G260 because S (epsilon) conformation "forbidden" or filtered. T0547 340 :FSQE 1n4wA 254 :RQTK T0547 347 :NK 1n4wA 261 :YA Number of specific fragments extracted= 2 number of extra gaps= 1 total=69394 # 1utcA.340.41 read from T0547.t04.many.frag # found chain 1utcA in template set T0547 340 :FSQEYAENK 1utcA 42 :EKVGEQAQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=69395 # 1iznA.340.145 read from T0547.t04.many.frag # found chain 1iznA in template set Warning: unaligning (T0547)E343 (1iznA)D149 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1iznA)Q151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1iznA)I154 because E (beta_S) conformation "forbidden" or filtered. T0547 340 :FSQ 1iznA 146 :KSI T0547 344 :Y 1iznA 150 :G T0547 346 :EN 1iznA 152 :QT Number of specific fragments extracted= 3 number of extra gaps= 3 total=69398 # 1xniA.340.23 read from T0547.t04.many.frag # found chain 1xniA in template set Warning: unaligning (T0547)Y344 (1xniA)A1512 because L (left) conformation "forbidden" or filtered. T0547 340 :FSQE 1xniA 1508 :RDVG T0547 345 :AENK 1xniA 1513 :GKYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=69400 # 1i8dA.340.15 read from T0547.t04.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)Q342 (1i8dA)K18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1i8dA)F21 because Y (epsilon') conformation "forbidden" or filtered. T0547 340 :FS 1i8dA 16 :DE T0547 343 :EY 1i8dA 19 :PN T0547 346 :ENK 1i8dA 22 :RTH Number of specific fragments extracted= 3 number of extra gaps= 2 total=69403 # 1uscA.340.125 read from T0547.t04.many.frag # found chain 1uscA in training set Warning: unaligning (T0547)Q342 (1uscA)F128 because D (zeta) conformation "forbidden" or filtered. T0547 340 :FS 1uscA 126 :HT T0547 343 :EYAENK 1uscA 129 :GDHDLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=69405 # 3bamA.340.98 read from T0547.t04.many.frag # found chain 3bamA in training set Warning: unaligning (T0547)E343 (3bamA)N102 because P (beta_P) conformation "forbidden" or filtered. T0547 340 :FSQ 3bamA 99 :FIE T0547 344 :YAENK 3bamA 103 :SELKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=69407 # 1r0pA.340.97 read from T0547.t04.many.frag # found chain 1r0pA in training set T0547 340 :FSQEYAENK 1r0pA 1146 :CLRSEGSPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=69408 # 1t95A.340.197 read from T0547.t04.many.frag # found chain 1t95A in template set T0547 340 :FSQEYAENK 1t95A 198 :EWQRDGSWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=69409 # 1gesA.340.234 read from T0547.t04.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)A345 (1gesA)G240 because T (delta_L) conformation "forbidden" or filtered. T0547 340 :FSQEY 1gesA 235 :VKNTD T0547 346 :ENK 1gesA 241 :SLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=69411 # 1czpA.340.8 read from T0547.t04.many.frag # found chain 1czpA in training set Warning: unaligning (T0547)Y344 (1czpA)G13 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1czpA)K15 because E (beta_S) conformation "forbidden" or filtered. T0547 340 :FSQE 1czpA 9 :NEAE T0547 345 :A 1czpA 14 :T T0547 347 :NK 1czpA 16 :HE Number of specific fragments extracted= 3 number of extra gaps= 2 total=69414 # 1bob.340.126 read from T0547.t04.many.frag # found chain 1bob in template set Warning: unaligning (T0547)E343 (1bob)N130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1bob)G131 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1bob)F134 because E (beta_S) conformation "forbidden" or filtered. T0547 340 :FSQ 1bob 127 :YSL T0547 345 :AE 1bob 132 :EE T0547 348 :K 1bob 135 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=69417 # 1omhA.340.128 read from T0547.t04.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)E343 (1omhA)Q132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1omhA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 340 :FSQ 1omhA 129 :QKI T0547 345 :AENK 1omhA 134 :KTRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=69419 # 1t6sA.340.140 read from T0547.t04.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)Q342 (1t6sA)S143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1t6sA)R146 because L (left) conformation "forbidden" or filtered. T0547 340 :FS 1t6sA 141 :AD T0547 343 :EY 1t6sA 144 :PG T0547 346 :ENK 1t6sA 147 :PLQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=69422 # 1jg5A.340.69 read from T0547.t04.many.frag # found chain 1jg5A in template set T0547 340 :FSQEYAENK 1jg5A 70 :TGVGQTLVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=69423 # 1ako.340.57 read from T0547.t04.many.frag # found chain 1ako in training set Warning: unaligning (T0547)E346 (1ako)G64 because S (epsilon) conformation "forbidden" or filtered. T0547 340 :FSQEYA 1ako 58 :GQKGHY T0547 347 :NK 1ako 65 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=69425 # 1kjqA.340.222 read from T0547.t04.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)E343 (1kjqA)D227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1kjqA)E232 because E (beta_S) conformation "forbidden" or filtered. T0547 340 :FSQ 1kjqA 224 :RQE T0547 344 :YAEN 1kjqA 228 :GDYR Number of specific fragments extracted= 2 number of extra gaps= 2 total=69427 # 1vioA.340.168 read from T0547.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0547)E343 (1vioA)D170 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1vioA)V174 because Y (epsilon') conformation "forbidden" or filtered. T0547 340 :FSQ 1vioA 167 :EIL T0547 344 :YAE 1vioA 171 :DYN T0547 348 :K 1vioA 175 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=69430 # 1knwA.340.287 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E343 (1knwA)G291 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1knwA)H294 because N (gamma') conformation "forbidden" or filtered. T0547 340 :FSQ 1knwA 288 :KQM T0547 344 :YA 1knwA 292 :SR T0547 347 :NK 1knwA 295 :FV Number of specific fragments extracted= 3 number of extra gaps= 2 total=69433 # 2cveA.340.155 read from T0547.t04.many.frag # found chain 2cveA in training set Warning: unaligning (T0547)E346 (2cveA)V162 because E (beta_S) conformation "forbidden" or filtered. T0547 340 :FSQEYA 2cveA 156 :TYTPEG T0547 347 :NK 2cveA 163 :RF Number of specific fragments extracted= 2 number of extra gaps= 1 total=69435 # 1jb0E.341.27 read from T0547.t04.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)Y344 (1jb0E)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 341 :SQE 1jb0E 28 :QTP T0547 345 :AENKL 1jb0E 32 :VKYPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69437 # 2aneA.341.88 read from T0547.t04.many.frag # found chain 2aneA in template set T0547 341 :SQEYAENKL 2aneA 82 :KLPDGTVKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=69438 # 1pfbA.341.13 read from T0547.t04.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)Y344 (1pfbA)G39 because T (delta_L) conformation "forbidden" or filtered. T0547 341 :SQE 1pfbA 36 :VKK T0547 345 :AENKL 1pfbA 40 :VVEYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=69440 # 1f60A.341.252 read from T0547.t04.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)S341 (1f60A)K253 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1f60A)G256 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1f60A)G258 because S (epsilon) conformation "forbidden" or filtered. T0547 342 :QE 1f60A 254 :IG T0547 345 :A 1f60A 257 :I T0547 347 :NKL 1f60A 259 :TVP Number of specific fragments extracted= 3 number of extra gaps= 3 total=69443 # 1xjvA.341.167 read from T0547.t04.many.frag # found chain 1xjvA in training set T0547 341 :SQEYAENKL 1xjvA 173 :EVDGASFLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=69444 # 1gmlA.341.145 read from T0547.t04.many.frag # found chain 1gmlA in template set T0547 341 :SQEYAENKL 1gmlA 354 :KIGDEYFTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=69445 # 1xniA.341.24 read from T0547.t04.many.frag # found chain 1xniA in template set Warning: unaligning (T0547)E343 (1xniA)G1511 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1xniA)A1512 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1xniA)G1513 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1xniA)K1516 because P (beta_P) conformation "forbidden" or filtered. T0547 341 :SQ 1xniA 1509 :DV T0547 346 :EN 1xniA 1514 :KY T0547 349 :L 1xniA 1517 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=69448 # 1yj7A.341.31 read from T0547.t04.many.frag # found chain 1yj7A in training set T0547 341 :SQEYAENKL 1yj7A 51 :MDKSGNMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=69449 # 1utcA.341.42 read from T0547.t04.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)Y344 (1utcA)E46 because G (3-10) conformation "forbidden" or filtered. T0547 341 :SQE 1utcA 43 :KVG T0547 345 :AENKL 1utcA 47 :QAQVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69451 # 1v8qA.341.70 read from T0547.t04.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)A345 (1v8qA)L75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1v8qA)G76 because S (epsilon) conformation "forbidden" or filtered. T0547 341 :SQEY 1v8qA 71 :DRGR T0547 347 :NKL 1v8qA 77 :RYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69453 # 1bob.341.127 read from T0547.t04.many.frag # found chain 1bob in template set Warning: unaligning (T0547)E343 (1bob)N130 because L (left) conformation "forbidden" or filtered. T0547 341 :SQ 1bob 128 :SL T0547 344 :YAENKL 1bob 131 :GEEFVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69455 # 1ssxA.341.58 read from T0547.t04.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)Q342 (1ssxA)P95 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1ssxA)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1ssxA)A104 because Y (epsilon') conformation "forbidden" or filtered. T0547 341 :S 1ssxA 94 :F T0547 344 :YAE 1ssxA 101 :NDR T0547 348 :KL 1ssxA 105 :WV Number of specific fragments extracted= 3 number of extra gaps= 2 total=69458 1vetA expands to /projects/compbio/data/pdb/1vet.pdb.gz 1vetA:# 1vetA.341.25 read from T0547.t04.many.frag # adding 1vetA to template set # found chain 1vetA in template set Warning: unaligning (T0547)Y344 (1vetA)G29 because T (delta_L) conformation "forbidden" or filtered. T0547 341 :SQE 1vetA 26 :DRD T0547 345 :AENKL 1vetA 30 :VPVIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=69460 # 1gesA.341.235 read from T0547.t04.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)N347 (1gesA)L242 because E (beta_S) conformation "forbidden" or filtered. T0547 341 :SQEYAE 1gesA 236 :KNTDGS T0547 348 :KL 1gesA 243 :TL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69462 # 1a1x.341.92 read from T0547.t04.many.frag # found chain 1a1x in template set Warning: unaligning (T0547)Y344 (1a1x)G96 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1a1x)E99 because E (beta_S) conformation "forbidden" or filtered. T0547 341 :SQE 1a1x 93 :MVR T0547 345 :AE 1a1x 97 :VQ T0547 348 :KL 1a1x 100 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=69465 # 1r0pA.341.98 read from T0547.t04.many.frag # found chain 1r0pA in training set Warning: unaligning (T0547)Y344 (1r0pA)E1150 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1r0pA)G1151 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1r0pA)P1153 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1r0pA)L1154 because E (beta_S) conformation "forbidden" or filtered. T0547 341 :SQE 1r0pA 1147 :LRS T0547 346 :E 1r0pA 1152 :S T0547 349 :L 1r0pA 1155 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=69468 # 3bamA.341.99 read from T0547.t04.many.frag # found chain 3bamA in training set Warning: unaligning (T0547)Q342 (3bamA)E101 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. T0547 341 :S 3bamA 100 :I T0547 343 :E 3bamA 102 :N T0547 345 :AENKL 3bamA 104 :ELKRV Number of specific fragments extracted= 3 number of extra gaps= 2 total=69471 # 1iznA.341.146 read from T0547.t04.many.frag # found chain 1iznA in template set T0547 341 :SQEYAENKL 1iznA 147 :SIDGQQTII Number of specific fragments extracted= 1 number of extra gaps= 0 total=69472 # 1n4wA.341.249 read from T0547.t04.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)A345 (1n4wA)G259 because S (epsilon) conformation "forbidden" or filtered. T0547 341 :SQEY 1n4wA 255 :QTKD T0547 346 :ENKL 1n4wA 260 :GYAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69474 # 2ai4A.341.19 read from T0547.t04.many.frag # found chain 2ai4A in training set Warning: unaligning (T0547)E343 (2ai4A)N19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (2ai4A)V23 because E (beta_S) conformation "forbidden" or filtered. T0547 341 :SQ 2ai4A 17 :LE T0547 344 :YAE 2ai4A 20 :GEP T0547 348 :KL 2ai4A 24 :FI Number of specific fragments extracted= 3 number of extra gaps= 2 total=69477 # 1fl0A.341.17 read from T0547.t04.many.frag # found chain 1fl0A in training set T0547 341 :SQEYAENKL 1fl0A 167 :KHPDADSLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=69478 # 1t95A.341.198 read from T0547.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)S341 (1t95A)W199 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1t95A)G203 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1t95A)C207 because Y (epsilon') conformation "forbidden" or filtered. T0547 342 :QEY 1t95A 200 :QRD T0547 346 :ENK 1t95A 204 :SWI Number of specific fragments extracted= 2 number of extra gaps= 3 total=69480 # 1ako.341.58 read from T0547.t04.many.frag # found chain 1ako in training set T0547 341 :SQEYAENKL 1ako 59 :QKGHYGVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=69481 # 1cv8.341.129 read from T0547.t04.many.frag # found chain 1cv8 in training set T0547 341 :SQEYAENKL 1cv8 130 :LNNGQEVII Number of specific fragments extracted= 1 number of extra gaps= 0 total=69482 # 1czpA.341.9 read from T0547.t04.many.frag # found chain 1czpA in training set Warning: unaligning (T0547)Y344 (1czpA)G13 because L (left) conformation "forbidden" or filtered. T0547 341 :SQE 1czpA 10 :EAE T0547 345 :AENKL 1czpA 14 :TKHEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=69484 # 1vlrA.341.204 read from T0547.t04.many.frag # found chain 1vlrA in template set Warning: unaligning (T0547)N347 (1vlrA)F199 because Y (epsilon') conformation "forbidden" or filtered. T0547 341 :SQEYAE 1vlrA 193 :PDPSDG T0547 348 :KL 1vlrA 200 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69486 # 1h4aX.341.46 read from T0547.t04.many.frag # found chain 1h4aX in training set Warning: unaligning (T0547)E343 (1h4aX)N49 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1h4aX)G52 because S (epsilon) conformation "forbidden" or filtered. T0547 341 :SQ 1h4aX 47 :QP T0547 344 :YA 1h4aX 50 :YS T0547 347 :NKL 1h4aX 53 :LQY Number of specific fragments extracted= 3 number of extra gaps= 2 total=69489 # 1t95A.341.18 read from T0547.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)E343 (1t95A)G21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1t95A)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 341 :SQ 1t95A 19 :RK T0547 345 :AENKL 1t95A 23 :EEFEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69491 # 1t6sA.341.141 read from T0547.t04.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)Q342 (1t6sA)S143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1t6sA)R146 because L (left) conformation "forbidden" or filtered. T0547 341 :S 1t6sA 142 :D T0547 343 :EY 1t6sA 144 :PG T0547 346 :ENKL 1t6sA 147 :PLQY Number of specific fragments extracted= 3 number of extra gaps= 2 total=69494 # 1vioA.341.169 read from T0547.t04.many.frag # found chain 1vioA in training set T0547 341 :SQEYAENKL 1vioA 168 :ILDDYNVNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=69495 # 1yj7A.342.32 read from T0547.t04.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)Y344 (1yj7A)S54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1yj7A)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 342 :QE 1yj7A 52 :DK T0547 346 :ENKLI 1yj7A 56 :NMTLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=69497 # 1pfbA.342.14 read from T0547.t04.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)Q342 (1pfbA)K37 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1pfbA)G39 because T (delta_L) conformation "forbidden" or filtered. T0547 345 :AENKLI 1pfbA 40 :VVEYRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=69498 # 1xniA.342.25 read from T0547.t04.many.frag # found chain 1xniA in template set Warning: unaligning (T0547)E343 (1xniA)G1511 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1xniA)G1513 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1xniA)Y1515 because E (beta_S) conformation "forbidden" or filtered. T0547 342 :Q 1xniA 1510 :V T0547 344 :Y 1xniA 1512 :A T0547 346 :E 1xniA 1514 :K T0547 348 :KLI 1xniA 1516 :KLL Number of specific fragments extracted= 4 number of extra gaps= 3 total=69502 # 1v8qA.342.71 read from T0547.t04.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)E343 (1v8qA)G73 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1v8qA)G76 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1v8qA)Y78 because P (beta_P) conformation "forbidden" or filtered. T0547 342 :Q 1v8qA 72 :R T0547 344 :YA 1v8qA 74 :RL T0547 347 :N 1v8qA 77 :R T0547 349 :LI 1v8qA 79 :VH Number of specific fragments extracted= 4 number of extra gaps= 3 total=69506 # 1bob.342.128 read from T0547.t04.many.frag # found chain 1bob in template set Warning: unaligning (T0547)E343 (1bob)N130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1bob)G131 because T (delta_L) conformation "forbidden" or filtered. T0547 342 :Q 1bob 129 :L T0547 345 :AENKLI 1bob 132 :EEFVVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=69508 # 1jb0E.342.28 read from T0547.t04.many.frag # found chain 1jb0E in template set T0547 342 :QEYAENKLI 1jb0E 29 :TPGVKYPVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=69509 # 1xjvA.342.168 read from T0547.t04.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)Y344 (1xjvA)G176 because T (delta_L) conformation "forbidden" or filtered. T0547 342 :QE 1xjvA 174 :VD T0547 345 :AENKLI 1xjvA 177 :ASFLLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=69511 # 1utcA.342.43 read from T0547.t04.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)E343 (1utcA)G45 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1utcA)A48 because P (beta_P) conformation "forbidden" or filtered. T0547 342 :Q 1utcA 44 :V T0547 344 :YA 1utcA 46 :EQ T0547 347 :NKLI 1utcA 49 :QVVI Number of specific fragments extracted= 3 number of extra gaps= 2 total=69514 # 2aneA.342.89 read from T0547.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)A345 (2aneA)G86 because T (delta_L) conformation "forbidden" or filtered. T0547 342 :QEY 2aneA 83 :LPD T0547 346 :ENKLI 2aneA 87 :TVKVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69516 # 1ssxA.342.59 read from T0547.t04.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)Q342 (1ssxA)P95 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1ssxA)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1ssxA)A104 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :YAE 1ssxA 101 :NDR T0547 348 :KLI 1ssxA 105 :WVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=69518 # 1gx5A.342.375 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. T0547 342 :QEYAENK 1gx5A 376 :ASGKRVY T0547 350 :I 1gx5A 384 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=69520 # 1cv8.342.130 read from T0547.t04.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)Y344 (1cv8)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 342 :QE 1cv8 131 :NN T0547 345 :AENKLI 1cv8 134 :QEVIII Number of specific fragments extracted= 2 number of extra gaps= 1 total=69522 # 1vetA.342.26 read from T0547.t04.many.frag # found chain 1vetA in template set Warning: unaligning (T0547)Y344 (1vetA)G29 because T (delta_L) conformation "forbidden" or filtered. T0547 342 :QE 1vetA 27 :RD T0547 345 :AENKLI 1vetA 30 :VPVIKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69524 # 1gmlA.342.146 read from T0547.t04.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)E343 (1gmlA)G356 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1gmlA)F360 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1gmlA)T361 because P (beta_P) conformation "forbidden" or filtered. T0547 342 :Q 1gmlA 355 :I T0547 344 :YAE 1gmlA 357 :DEY T0547 349 :LI 1gmlA 362 :FI Number of specific fragments extracted= 3 number of extra gaps= 2 total=69527 # 1nv8A.342.269 read from T0547.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)Y344 (1nv8A)G270 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1nv8A)R273 because G (3-10) conformation "forbidden" or filtered. T0547 342 :QE 1nv8A 268 :SA T0547 345 :AE 1nv8A 271 :KY T0547 348 :KLI 1nv8A 274 :FLL Number of specific fragments extracted= 3 number of extra gaps= 2 total=69530 # 1dq3A.342.359 read from T0547.t04.many.frag # found chain 1dq3A in template set T0547 342 :QEYAENKLI 1dq3A 360 :TNGSQTIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=69531 # 1h4aX.342.47 read from T0547.t04.many.frag # found chain 1h4aX in training set Warning: unaligning (T0547)E343 (1h4aX)N49 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1h4aX)Y50 because L (left) conformation "forbidden" or filtered. T0547 342 :Q 1h4aX 48 :P T0547 345 :AENKLI 1h4aX 51 :SGLQYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=69533 # 1t95A.342.19 read from T0547.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)E343 (1t95A)G21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1t95A)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 342 :Q 1t95A 20 :K T0547 345 :AENKLI 1t95A 23 :EEFEVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69535 # 1r0pA.342.99 read from T0547.t04.many.frag # found chain 1r0pA in training set Warning: unaligning (T0547)A345 (1r0pA)G1151 because L (left) conformation "forbidden" or filtered. T0547 342 :QEY 1r0pA 1148 :RSE T0547 346 :ENKLI 1r0pA 1152 :SPLVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69537 # 1vlrA.342.205 read from T0547.t04.many.frag # found chain 1vlrA in template set Warning: unaligning (T0547)N347 (1vlrA)F199 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1vlrA)V200 because E (beta_S) conformation "forbidden" or filtered. T0547 342 :QEYAE 1vlrA 194 :DPSDG T0547 349 :LI 1vlrA 201 :LI Number of specific fragments extracted= 2 number of extra gaps= 1 total=69539 # 1gesA.342.236 read from T0547.t04.many.frag # found chain 1gesA in template set T0547 342 :QEYAENKLI 1gesA 237 :NTDGSLTLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=69540 # 1f60A.342.253 read from T0547.t04.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)K348 (1f60A)V260 because D (zeta) conformation "forbidden" or filtered. T0547 342 :QEYAEN 1f60A 254 :IGGIGT T0547 349 :LI 1f60A 261 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69542 # 1r5mA.342.157 read from T0547.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0547)A345 (1r5mA)G273 because L (left) conformation "forbidden" or filtered. T0547 342 :QEY 1r5mA 270 :NKD T0547 346 :ENKLI 1r5mA 274 :THIIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=69544 # 2f06A.342.107 read from T0547.t04.many.frag # found chain 2f06A in template set Warning: unaligning (T0547)E343 (2f06A)N106 because S (epsilon) conformation "forbidden" or filtered. T0547 342 :Q 2f06A 105 :N T0547 344 :YAENKLI 2f06A 107 :NVANVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=69546 # 1jztA.342.209 read from T0547.t04.many.frag # found chain 1jztA in template set T0547 342 :QEYAENKLI 1jztA 210 :ENQTTHYVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=69547 # 2ai4A.342.20 read from T0547.t04.many.frag # found chain 2ai4A in training set T0547 342 :QEYAENKLI 2ai4A 18 :ENGEPVFIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=69548 # 1fl0A.342.18 read from T0547.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)A345 (1fl0A)A171 because D (zeta) conformation "forbidden" or filtered. T0547 342 :QEY 1fl0A 168 :HPD T0547 346 :ENKLI 1fl0A 172 :DSLYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69550 # 1iznA.342.147 read from T0547.t04.many.frag # found chain 1iznA in template set Warning: unaligning (T0547)Y344 (1iznA)G150 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1iznA)I154 because E (beta_S) conformation "forbidden" or filtered. T0547 342 :QE 1iznA 148 :ID T0547 345 :AEN 1iznA 151 :QQT T0547 349 :LI 1iznA 155 :IA Number of specific fragments extracted= 3 number of extra gaps= 2 total=69553 # 1a8y.342.245 read from T0547.t04.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)E343 (1a8y)D247 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1a8y)G248 because T (delta_L) conformation "forbidden" or filtered. T0547 342 :Q 1a8y 246 :M T0547 345 :AENKLI 1a8y 249 :IHIVAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=69555 # 1czpA.342.10 read from T0547.t04.many.frag # found chain 1czpA in training set Warning: unaligning (T0547)Y344 (1czpA)G13 because L (left) conformation "forbidden" or filtered. T0547 342 :QE 1czpA 11 :AE T0547 345 :AENKLI 1czpA 14 :TKHEIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=69557 # 1yj7A.343.33 read from T0547.t04.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)A345 (1yj7A)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1yj7A)N56 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1yj7A)T58 because E (beta_S) conformation "forbidden" or filtered. T0547 343 :EY 1yj7A 53 :KS T0547 347 :N 1yj7A 57 :M T0547 349 :LIL 1yj7A 59 :LSV Number of specific fragments extracted= 3 number of extra gaps= 2 total=69560 # 1gx5A.343.376 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)Y344 (1gx5A)G378 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1gx5A)T385 because Y (epsilon') conformation "forbidden" or filtered. T0547 343 :E 1gx5A 377 :S T0547 345 :AENKLI 1gx5A 379 :KRVYYL Number of specific fragments extracted= 2 number of extra gaps= 2 total=69562 # 2fimA.343.107 read from T0547.t04.many.frag # found chain 2fimA in template set T0547 343 :EYAENKLIL 2fimA 321 :LLGNRFTVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=69563 # 1bob.343.129 read from T0547.t04.many.frag # found chain 1bob in template set Warning: unaligning (T0547)E343 (1bob)N130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1bob)E133 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :YA 1bob 131 :GE T0547 347 :NKLIL 1bob 134 :FVVYK Number of specific fragments extracted= 2 number of extra gaps= 2 total=69565 # 1h4aX.343.48 read from T0547.t04.many.frag # found chain 1h4aX in training set Warning: unaligning (T0547)E343 (1h4aX)N49 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1h4aX)Y50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1h4aX)Q54 because E (beta_S) conformation "forbidden" or filtered. T0547 345 :AEN 1h4aX 51 :SGL T0547 349 :LIL 1h4aX 55 :YFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=69567 # 1o59A.343.155 read from T0547.t04.many.frag # found chain 1o59A in template set Warning: unaligning (T0547)E346 (1o59A)Q147 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1o59A)R148 because P (beta_P) conformation "forbidden" or filtered. T0547 343 :EYA 1o59A 144 :GPS T0547 348 :KLIL 1o59A 149 :HLFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69569 # 1ia9A.343.160 read from T0547.t04.many.frag # found chain 1ia9A in template set Warning: unaligning (T0547)E346 (1ia9A)G1712 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1ia9A)Q1713 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1ia9A)F1715 because Y (epsilon') conformation "forbidden" or filtered. T0547 343 :EYA 1ia9A 1709 :HSA T0547 348 :K 1ia9A 1714 :W T0547 350 :IL 1ia9A 1716 :AV Number of specific fragments extracted= 3 number of extra gaps= 2 total=69572 # 1atg.343.101 read from T0547.t04.many.frag # found chain 1atg in training set Warning: unaligning (T0547)A345 (1atg)W105 because Y (epsilon') conformation "forbidden" or filtered. T0547 343 :EY 1atg 103 :NG T0547 346 :ENKLIL 1atg 106 :RHIAIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=69574 # 1ssxA.343.60 read from T0547.t04.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)E343 (1ssxA)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1ssxA)R103 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1ssxA)A104 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :YA 1ssxA 101 :ND T0547 348 :KLIL 1ssxA 105 :WVSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=69576 # 1xniA.343.26 read from T0547.t04.many.frag # found chain 1xniA in template set Warning: unaligning (T0547)E343 (1xniA)G1511 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1xniA)A1512 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1xniA)G1513 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1xniA)K1516 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :EN 1xniA 1514 :KY T0547 349 :LIL 1xniA 1517 :LLF Number of specific fragments extracted= 2 number of extra gaps= 2 total=69578 # 1mml.343.131 read from T0547.t04.many.frag # found chain 1mml in training set T0547 343 :EYAENKLIL 1mml 141 :PSHQWYTVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=69579 # 1utcA.343.44 read from T0547.t04.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)E343 (1utcA)G45 because S (epsilon) conformation "forbidden" or filtered. T0547 344 :YAENKLIL 1utcA 46 :EQAQVVII Number of specific fragments extracted= 1 number of extra gaps= 1 total=69580 # 1vetA.343.27 read from T0547.t04.many.frag # found chain 1vetA in template set T0547 343 :EYAENKLIL 1vetA 28 :DGVPVIKVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=69581 # 1vhvA.343.228 read from T0547.t04.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)E343 (1vhvA)K216 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 because of BadResidue code BAD_PEPTIDE in next template residue (1vhvA)L218 Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE at template residue (1vhvA)L218 Warning: unaligning (T0547)E346 (1vhvA)H219 because E (beta_S) conformation "forbidden" or filtered. T0547 347 :NKLIL 1vhvA 220 :VMVVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=69582 # 1dq3A.343.360 read from T0547.t04.many.frag # found chain 1dq3A in template set Warning: unaligning (T0547)E343 (1dq3A)N361 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1dq3A)G362 because S (epsilon) conformation "forbidden" or filtered. T0547 345 :AENKLIL 1dq3A 363 :SQTIAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=69583 # 1jb0E.343.29 read from T0547.t04.many.frag # found chain 1jb0E in template set T0547 343 :EYAENKLIL 1jb0E 30 :PGVKYPVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=69584 # 1w8kA.343.186 read from T0547.t04.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)K348 (1w8kA)L232 because P (beta_P) conformation "forbidden" or filtered. T0547 343 :EYAEN 1w8kA 227 :ESFEN T0547 349 :LIL 1w8kA 233 :VYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69586 # 1vlrA.343.206 read from T0547.t04.many.frag # found chain 1vlrA in template set Warning: unaligning (T0547)N347 (1vlrA)F199 because Y (epsilon') conformation "forbidden" or filtered. T0547 343 :EYAE 1vlrA 195 :PSDG T0547 348 :KLIL 1vlrA 200 :VLIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=69588 # 7odcA.343.309 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 Warning: unaligning (T0547)E346 (7odcA)T313 because E (beta_S) conformation "forbidden" or filtered. T0547 345 :A 7odcA 312 :Q T0547 347 :NKLIL 7odcA 314 :FMYYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69590 # 1r5mA.343.158 read from T0547.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0547)A345 (1r5mA)G273 because L (left) conformation "forbidden" or filtered. T0547 343 :EY 1r5mA 271 :KD T0547 346 :ENKLIL 1r5mA 274 :THIISM Number of specific fragments extracted= 2 number of extra gaps= 1 total=69592 # 1t95A.343.20 read from T0547.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)E343 (1t95A)G21 because L (left) conformation "forbidden" or filtered. T0547 344 :YAENKLIL 1t95A 22 :GEEFEVLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=69593 # 1sx5A.343.68 read from T0547.t04.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)E346 (1sx5A)P73 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1sx5A)Y78 because Y (epsilon') conformation "forbidden" or filtered. T0547 343 :EYA 1sx5A 70 :NHY T0547 347 :NKLI 1sx5A 74 :DFTL Number of specific fragments extracted= 2 number of extra gaps= 2 total=69595 # 1v8qA.343.72 read from T0547.t04.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)E343 (1v8qA)G73 because S (epsilon) conformation "forbidden" or filtered. T0547 344 :YAENKLIL 1v8qA 74 :RLGRYVHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=69596 # 1kjqA.343.225 read from T0547.t04.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)E343 (1kjqA)D227 because L (left) conformation "forbidden" or filtered. T0547 344 :YAENKLIL 1kjqA 228 :GDYRESWQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=69597 # 1knwA.343.289 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E343 (1knwA)M290 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1knwA)G291 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1knwA)F295 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :AEN 1knwA 292 :SRH T0547 349 :LIL 1knwA 296 :VLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=69599 # 1xy7A.343.23 read from T0547.t04.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)N347 (1xy7A)Q28 because E (beta_S) conformation "forbidden" or filtered. T0547 343 :EYAE 1xy7A 24 :TEFK T0547 348 :KLIL 1xy7A 29 :MLLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69601 # 1zvdA.343.92 read from T0547.t04.many.frag # found chain 1zvdA in template set Warning: unaligning (T0547)A345 (1zvdA)D463 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1zvdA)T466 because P (beta_P) conformation "forbidden" or filtered. T0547 343 :EY 1zvdA 461 :RD T0547 346 :EN 1zvdA 464 :IY T0547 349 :LIL 1zvdA 467 :LQI Number of specific fragments extracted= 3 number of extra gaps= 2 total=69604 # 2f06A.343.108 read from T0547.t04.many.frag # found chain 2f06A in template set Warning: unaligning (T0547)E343 (2f06A)N106 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (2f06A)V108 because E (beta_S) conformation "forbidden" or filtered. T0547 344 :Y 2f06A 107 :N T0547 346 :ENKLIL 2f06A 109 :ANVVIR Number of specific fragments extracted= 2 number of extra gaps= 2 total=69606 # 1pfbA.343.15 read from T0547.t04.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1pfbA)G39 because T (delta_L) conformation "forbidden" or filtered. T0547 345 :AENKLIL 1pfbA 40 :VVEYRVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=69607 # 1r0pA.343.100 read from T0547.t04.many.frag # found chain 1r0pA in training set Warning: unaligning (T0547)E343 (1r0pA)S1149 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r0pA)E1150 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1r0pA)G1151 because L (left) conformation "forbidden" or filtered. T0547 346 :ENKLIL 1r0pA 1152 :SPLVVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=69608 # 1yj7A.344.34 read from T0547.t04.many.frag # found chain 1yj7A in training set T0547 344 :YAENKLILK 1yj7A 54 :SGNMTLSVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=69609 # 1gx5A.344.377 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)Y344 (1gx5A)G378 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1gx5A)T385 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :AENK 1gx5A 379 :KRVY T0547 350 :I 1gx5A 384 :L Number of specific fragments extracted= 2 number of extra gaps= 3 total=69611 # 1knwA.344.290 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E346 (1knwA)R293 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :YA 1knwA 291 :GS T0547 347 :NKLILK 1knwA 294 :HFVLVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=69613 # 7odcA.344.310 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 345 :AENKLILK 7odcA 312 :QTFMYYVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=69614 # 1xy7A.344.24 read from T0547.t04.many.frag # found chain 1xy7A in training set T0547 344 :YAENKLILK 1xy7A 25 :EFKQMLLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=69615 # 2fimA.344.108 read from T0547.t04.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)A345 (2fimA)G323 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (2fimA)D330 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :Y 2fimA 322 :L T0547 346 :ENKLIL 2fimA 324 :NRFTVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=69617 # 1ia9A.344.161 read from T0547.t04.many.frag # found chain 1ia9A in template set Warning: unaligning (T0547)K348 (1ia9A)W1714 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1ia9A)E1718 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :YAEN 1ia9A 1710 :SAGQ T0547 349 :LIL 1ia9A 1715 :FAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=69619 # 1w8kA.344.187 read from T0547.t04.many.frag # found chain 1w8kA in training set T0547 344 :YAENKLILK 1w8kA 228 :SFENLVYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=69620 # 1utcA.344.45 read from T0547.t04.many.frag # found chain 1utcA in template set T0547 344 :YAENKLILK 1utcA 46 :EQAQVVIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=69621 # 1bob.344.130 read from T0547.t04.many.frag # found chain 1bob in template set Warning: unaligning (T0547)Y344 (1bob)G131 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1bob)S139 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :AENKLIL 1bob 132 :EEFVVYK Number of specific fragments extracted= 1 number of extra gaps= 2 total=69622 # 1atg.344.102 read from T0547.t04.many.frag # found chain 1atg in training set Warning: unaligning (T0547)Y344 (1atg)G104 because G (3-10) conformation "forbidden" or filtered. T0547 345 :AENKLILK 1atg 105 :WRHIAISN Number of specific fragments extracted= 1 number of extra gaps= 1 total=69623 # 1mml.344.132 read from T0547.t04.many.frag # found chain 1mml in training set T0547 344 :YAENKLILK 1mml 142 :SHQWYTVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=69624 # 1ssxA.344.61 read from T0547.t04.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)A345 (1ssxA)D102 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1ssxA)A104 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :Y 1ssxA 101 :N T0547 346 :E 1ssxA 103 :R T0547 348 :KLILK 1ssxA 105 :WVSLT Number of specific fragments extracted= 3 number of extra gaps= 2 total=69627 # 1vhvA.344.229 read from T0547.t04.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)Y344 because of BadResidue code BAD_PEPTIDE in next template residue (1vhvA)L218 Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE at template residue (1vhvA)L218 Warning: unaligning (T0547)N347 (1vhvA)V220 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1vhvA)M221 because E (beta_S) conformation "forbidden" or filtered. T0547 346 :E 1vhvA 219 :H T0547 349 :LILK 1vhvA 222 :VVLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=69629 # 1h4aX.344.49 read from T0547.t04.many.frag # found chain 1h4aX in training set Warning: unaligning (T0547)K348 (1h4aX)Q54 because E (beta_S) conformation "forbidden" or filtered. T0547 344 :YAEN 1h4aX 50 :YSGL T0547 349 :LILK 1h4aX 55 :YFLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=69631 # 1o59A.344.156 read from T0547.t04.many.frag # found chain 1o59A in template set Warning: unaligning (T0547)A345 (1o59A)S146 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1o59A)Q147 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :Y 1o59A 145 :P T0547 347 :NKLILK 1o59A 148 :RHLFVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=69633 # 1r7mA.344.192 read from T0547.t04.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)Y344 (1r7mA)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. T0547 346 :ENKLILK 1r7mA 195 :KPIIYID Number of specific fragments extracted= 1 number of extra gaps= 1 total=69634 # 1vetA.344.28 read from T0547.t04.many.frag # found chain 1vetA in template set Warning: unaligning (T0547)Y344 (1vetA)G29 because T (delta_L) conformation "forbidden" or filtered. T0547 345 :AENKLILK 1vetA 30 :VPVIKVAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=69635 # 1t95A.344.21 read from T0547.t04.many.frag # found chain 1t95A in template set T0547 344 :YAENKLILK 1t95A 22 :GEEFEVLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=69636 # 1kjqA.344.226 read from T0547.t04.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)Y344 (1kjqA)G228 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1kjqA)Y230 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1kjqA)P236 because C (cis) conformation "forbidden" or filtered. T0547 345 :A 1kjqA 229 :D T0547 347 :NKLIL 1kjqA 231 :RESWQ Number of specific fragments extracted= 2 number of extra gaps= 3 total=69638 # 1p57A.344.67 read from T0547.t04.many.frag # found chain 1p57A in training set Warning: unaligning (T0547)Y344 (1p57A)G68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1p57A)F72 because E (beta_S) conformation "forbidden" or filtered. T0547 345 :AEN 1p57A 69 :TSG T0547 349 :LILK 1p57A 73 :FCVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=69640 # 1vioA.344.172 read from T0547.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0547)N347 (1vioA)V174 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :YAE 1vioA 171 :DYN T0547 348 :KLILK 1vioA 175 :NLTIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=69642 # 1xniA.344.27 read from T0547.t04.many.frag # found chain 1xniA in template set Warning: unaligning (T0547)Y344 (1xniA)A1512 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1xniA)G1513 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :ENKLILK 1xniA 1514 :KYKLLFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=69643 # 1gx5A.344.376 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)A345 (1gx5A)G378 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1gx5A)T385 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :Y 1gx5A 377 :S T0547 346 :ENKLIL 1gx5A 379 :KRVYYL Number of specific fragments extracted= 2 number of extra gaps= 2 total=69645 # 1jb0E.344.30 read from T0547.t04.many.frag # found chain 1jb0E in template set T0547 344 :YAENKLILK 1jb0E 31 :GVKYPVIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=69646 # 2ai4A.344.22 read from T0547.t04.many.frag # found chain 2ai4A in training set Warning: unaligning (T0547)Y344 (2ai4A)G20 because T (delta_L) conformation "forbidden" or filtered. T0547 345 :AENKLILK 2ai4A 21 :EPVFIYTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=69647 # 1zvdA.344.93 read from T0547.t04.many.frag # found chain 1zvdA in template set T0547 344 :YAENKLILK 1zvdA 462 :DDIYTLQIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=69648 # 1sx5A.344.69 read from T0547.t04.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)E346 (1sx5A)P73 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1sx5A)Y78 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :YA 1sx5A 71 :HY T0547 347 :NKLI 1sx5A 74 :DFTL T0547 352 :K 1sx5A 79 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=69651 # 2f06A.344.109 read from T0547.t04.many.frag # found chain 2f06A in template set Warning: unaligning (T0547)N347 (2f06A)N110 because E (beta_S) conformation "forbidden" or filtered. T0547 344 :YAE 2f06A 107 :NVA T0547 348 :KLILK 2f06A 111 :VVIRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=69653 # 1pg4A.344.458 read from T0547.t04.many.frag # found chain 1pg4A in training set Warning: unaligning (T0547)A345 (1pg4A)T460 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1pg4A)G462 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1pg4A)N463 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :Y 1pg4A 459 :A T0547 346 :E 1pg4A 461 :E T0547 349 :LILK 1pg4A 464 :LVIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=69656 # 1knwA.345.291 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E346 (1knwA)R293 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1knwA)D299 because G (3-10) conformation "forbidden" or filtered. T0547 345 :A 1knwA 292 :S T0547 347 :NKLIL 1knwA 294 :HFVLV T0547 353 :K 1knwA 300 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=69659 # 7odcA.345.311 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K353 (7odcA)D320 because E (beta_S) conformation "forbidden" or filtered. T0547 345 :AENKLILK 7odcA 312 :QTFMYYVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=69660 # 1xy7A.345.25 read from T0547.t04.many.frag # found chain 1xy7A in training set T0547 345 :AENKLILKK 1xy7A 26 :FKQMLLVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=69661 # 1yj7A.345.35 read from T0547.t04.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)A345 (1yj7A)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1yj7A)M57 because E (beta_S) conformation "forbidden" or filtered. T0547 346 :E 1yj7A 56 :N T0547 348 :KLILKK 1yj7A 58 :TLSVAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=69663 # 1p57A.345.68 read from T0547.t04.many.frag # found chain 1p57A in training set Warning: unaligning (T0547)E346 (1p57A)S70 because D (zeta) conformation "forbidden" or filtered. T0547 345 :A 1p57A 69 :T T0547 347 :NKLILKK 1p57A 71 :GFFCVDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=69665 # 1utcA.345.46 read from T0547.t04.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)E346 (1utcA)A48 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :A 1utcA 47 :Q T0547 347 :NKLILKK 1utcA 49 :QVVIIDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=69667 # 1gx5A.345.378 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L351 (1gx5A)T385 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :AENKLI 1gx5A 379 :KRVYYL T0547 353 :K 1gx5A 387 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=69669 # 1ia9A.345.162 read from T0547.t04.many.frag # found chain 1ia9A in template set Warning: unaligning (T0547)N347 (1ia9A)Q1713 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1ia9A)F1715 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1ia9A)E1718 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1ia9A)E1719 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :AE 1ia9A 1711 :AG T0547 348 :K 1ia9A 1714 :W T0547 350 :IL 1ia9A 1716 :AV Number of specific fragments extracted= 3 number of extra gaps= 3 total=69672 # 1r7mA.345.193 read from T0547.t04.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)A345 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. T0547 346 :ENKLILKK 1r7mA 195 :KPIIYIDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=69673 # 1vhvA.345.230 read from T0547.t04.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)A345 because of BadResidue code BAD_PEPTIDE at template residue (1vhvA)L218 T0547 346 :ENKLILKK 1vhvA 219 :HVMVVLAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=69674 # 1vetA.345.29 read from T0547.t04.many.frag # found chain 1vetA in template set Warning: unaligning (T0547)E346 (1vetA)P31 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :A 1vetA 30 :V T0547 347 :NKLILKK 1vetA 32 :VIKVAND Number of specific fragments extracted= 2 number of extra gaps= 1 total=69676 # 2fimA.345.109 read from T0547.t04.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)A345 (2fimA)G323 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :ENKLILKK 2fimA 324 :NRFTVFDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=69677 # 1w8kA.345.188 read from T0547.t04.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)K352 (1w8kA)S236 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :AENKLIL 1w8kA 229 :FENLVYL T0547 353 :K 1w8kA 237 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=69679 # 1ssxA.345.62 read from T0547.t04.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)N347 (1ssxA)A104 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :AE 1ssxA 102 :DR T0547 348 :KLILKK 1ssxA 105 :WVSLTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=69681 # 1atg.345.103 read from T0547.t04.many.frag # found chain 1atg in training set Warning: unaligning (T0547)A345 (1atg)W105 because Y (epsilon') conformation "forbidden" or filtered. T0547 346 :ENKLILKK 1atg 106 :RHIAISNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=69682 # 1mml.345.133 read from T0547.t04.many.frag # found chain 1mml in training set T0547 345 :AENKLILKK 1mml 143 :HQWYTVLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=69683 # 1bob.345.131 read from T0547.t04.many.frag # found chain 1bob in template set Warning: unaligning (T0547)K352 (1bob)S139 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1bob)S140 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :AENKLIL 1bob 132 :EEFVVYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=69684 # 1kjqA.345.227 read from T0547.t04.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)A345 (1kjqA)D229 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1kjqA)Y230 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1kjqA)P236 because C (cis) conformation "forbidden" or filtered. T0547 347 :NKLIL 1kjqA 231 :RESWQ T0547 353 :K 1kjqA 237 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=69686 # 1h4aX.345.50 read from T0547.t04.many.frag # found chain 1h4aX in training set T0547 345 :AENKLILKK 1h4aX 51 :SGLQYFLHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=69687 # 1vioA.345.173 read from T0547.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0547)N347 (1vioA)V174 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :AE 1vioA 172 :YN T0547 348 :KLILKK 1vioA 175 :NLTISE Number of specific fragments extracted= 2 number of extra gaps= 1 total=69689 # 2ai4A.345.23 read from T0547.t04.many.frag # found chain 2ai4A in training set Warning: unaligning (T0547)N347 (2ai4A)V23 because E (beta_S) conformation "forbidden" or filtered. T0547 345 :AE 2ai4A 21 :EP T0547 348 :KLILKK 2ai4A 24 :FIYTDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=69691 # 1sx5A.345.70 read from T0547.t04.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)E346 (1sx5A)P73 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1sx5A)Y78 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :A 1sx5A 72 :Y T0547 347 :NKLI 1sx5A 74 :DFTL T0547 352 :KK 1sx5A 79 :KP Number of specific fragments extracted= 3 number of extra gaps= 2 total=69694 # 1xszA.345.201 read from T0547.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)K352 (1xszA)S207 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1xszA)T208 because G (3-10) conformation "forbidden" or filtered. T0547 345 :AENKLIL 1xszA 200 :SPGYELT Number of specific fragments extracted= 1 number of extra gaps= 1 total=69695 # 1zvdA.345.94 read from T0547.t04.many.frag # found chain 1zvdA in template set Warning: unaligning (T0547)A345 (1zvdA)D463 because D (zeta) conformation "forbidden" or filtered. T0547 346 :ENKLILKK 1zvdA 464 :IYTLQINP Number of specific fragments extracted= 1 number of extra gaps= 1 total=69696 # 1gx5A.345.377 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)A345 (1gx5A)G378 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1gx5A)T385 because Y (epsilon') conformation "forbidden" or filtered. T0547 346 :ENKLIL 1gx5A 379 :KRVYYL T0547 353 :K 1gx5A 386 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=69698 # 1czpA.345.13 read from T0547.t04.many.frag # found chain 1czpA in training set T0547 345 :AENKLILKK 1czpA 14 :TKHEIEVPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=69699 # 1pg4A.345.459 read from T0547.t04.many.frag # found chain 1pg4A in training set Warning: unaligning (T0547)A345 (1pg4A)T460 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1pg4A)G462 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1pg4A)D468 because Y (epsilon') conformation "forbidden" or filtered. T0547 346 :E 1pg4A 461 :E T0547 348 :KLILK 1pg4A 463 :NLVIT Number of specific fragments extracted= 2 number of extra gaps= 3 total=69701 # 1o59A.345.157 read from T0547.t04.many.frag # found chain 1o59A in template set Warning: unaligning (T0547)A345 (1o59A)S146 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1o59A)R148 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1o59A)R153 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :E 1o59A 147 :Q T0547 348 :KLIL 1o59A 149 :HLFV T0547 353 :K 1o59A 154 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=69704 # 2f06A.345.110 read from T0547.t04.many.frag # found chain 2f06A in template set Warning: unaligning (T0547)A345 (2f06A)V108 because E (beta_S) conformation "forbidden" or filtered. T0547 346 :ENKLILKK 2f06A 109 :ANVVIRPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=69705 # 2bcmA.345.54 read from T0547.t04.many.frag # found chain 2bcmA in training set T0547 345 :AENKLILKK 2bcmA 54 :LQAALQADP Number of specific fragments extracted= 1 number of extra gaps= 0 total=69706 # 1knwA.346.292 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q354 (1knwA)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 346 :ENKLILKK 1knwA 293 :RHFVLVDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=69707 # 7odcA.346.312 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 346 :ENKLILKKQ 7odcA 313 :TFMYYVNDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=69708 # 1p57A.346.69 read from T0547.t04.many.frag # found chain 1p57A in training set Warning: unaligning (T0547)N347 (1p57A)G71 because S (epsilon) conformation "forbidden" or filtered. T0547 346 :E 1p57A 70 :S T0547 348 :KLILKKQ 1p57A 72 :FFCVDEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=69710 # 1xy7A.346.26 read from T0547.t04.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)K348 (1xy7A)M29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1xy7A)Q35 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :EN 1xy7A 27 :KQ T0547 349 :LILKK 1xy7A 30 :LLVEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=69712 # 1r7mA.346.194 read from T0547.t04.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)N347 (1r7mA)P196 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1r7mA)D201 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :E 1r7mA 195 :K T0547 348 :KLIL 1r7mA 197 :IIYI T0547 353 :KQ 1r7mA 202 :SM Number of specific fragments extracted= 3 number of extra gaps= 2 total=69715 # 1yj7A.346.36 read from T0547.t04.many.frag # found chain 1yj7A in training set T0547 346 :ENKLILKKQ 1yj7A 56 :NMTLSVAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=69716 # 1vetA.346.30 read from T0547.t04.many.frag # found chain 1vetA in template set T0547 346 :ENKLILKKQ 1vetA 31 :PVIKVANDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=69717 # 1gx5A.346.379 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1gx5A)D387 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :ENK 1gx5A 380 :RVY T0547 350 :IL 1gx5A 384 :LT T0547 354 :Q 1gx5A 388 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=69720 # 1utcA.346.47 read from T0547.t04.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)K352 (1utcA)D54 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :ENKLIL 1utcA 48 :AQVVII T0547 353 :KQ 1utcA 55 :MN Number of specific fragments extracted= 2 number of extra gaps= 1 total=69722 # 1vhvA.346.231 read from T0547.t04.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)K348 (1vhvA)M221 because E (beta_S) conformation "forbidden" or filtered. T0547 346 :EN 1vhvA 219 :HV T0547 349 :LILKKQ 1vhvA 222 :VVLAKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=69724 # 2fimA.346.110 read from T0547.t04.many.frag # found chain 2fimA in template set T0547 346 :ENKLILKKQ 2fimA 324 :NRFTVFDNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=69725 # 1ia9A.346.163 read from T0547.t04.many.frag # found chain 1ia9A in template set Warning: unaligning (T0547)E346 (1ia9A)G1712 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1ia9A)Q1713 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1ia9A)F1715 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1ia9A)E1718 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :K 1ia9A 1714 :W T0547 350 :IL 1ia9A 1716 :AV T0547 353 :KQ 1ia9A 1719 :EC Number of specific fragments extracted= 3 number of extra gaps= 3 total=69728 # 1ssxA.346.63 read from T0547.t04.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)K352 (1ssxA)T109 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :ENKLIL 1ssxA 103 :RAWVSL T0547 353 :KQ 1ssxA 110 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=69730 # 1bob.346.132 read from T0547.t04.many.frag # found chain 1bob in template set Warning: unaligning (T0547)K352 (1bob)S139 because Y (epsilon') conformation "forbidden" or filtered. T0547 346 :ENKLIL 1bob 133 :EFVVYK T0547 353 :KQ 1bob 140 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69732 # 1xszA.346.202 read from T0547.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)N347 (1xszA)G202 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1xszA)S207 because Y (epsilon') conformation "forbidden" or filtered. T0547 346 :E 1xszA 201 :P T0547 348 :KLIL 1xszA 203 :YELT T0547 353 :KQ 1xszA 208 :TT Number of specific fragments extracted= 3 number of extra gaps= 2 total=69735 # 1kjqA.346.228 read from T0547.t04.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)K352 (1kjqA)P236 because C (cis) conformation "forbidden" or filtered. T0547 346 :ENKLIL 1kjqA 230 :YRESWQ T0547 353 :KQ 1kjqA 237 :QQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=69737 # 1atg.346.104 read from T0547.t04.many.frag # found chain 1atg in training set T0547 346 :ENKLILKKQ 1atg 106 :RHIAISNPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=69738 # 2ai4A.346.24 read from T0547.t04.many.frag # found chain 2ai4A in training set T0547 346 :ENKLILKKQ 2ai4A 22 :PVFIYTDAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=69739 # 1d5tA.346.223 read from T0547.t04.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE in next template residue (1d5tA)Y224 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE at template residue (1d5tA)Y224 Warning: unaligning (T0547)K353 (1d5tA)Y229 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1d5tA)G230 because S (epsilon) conformation "forbidden" or filtered. T0547 346 :E 1d5tA 222 :S T0547 349 :LILK 1d5tA 225 :LYPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=69741 # 1t77A.346.27 read from T0547.t04.many.frag # found chain 1t77A in template set T0547 346 :ENKLILKKQ 1t77A 2103 :ELYFEVDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=69742 # 1gw5S.346.65 read from T0547.t04.many.frag # found chain 1gw5S in template set T0547 346 :ENKLILKKQ 1gw5S 66 :YFCICVDVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=69743 # 1mml.346.134 read from T0547.t04.many.frag # found chain 1mml in training set Warning: unaligning (T0547)K348 (1mml)Y146 because E (beta_S) conformation "forbidden" or filtered. T0547 346 :EN 1mml 144 :QW T0547 349 :LILKKQ 1mml 147 :TVLDLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=69745 # 1w8kA.346.189 read from T0547.t04.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)N347 (1w8kA)N231 because G (3-10) conformation "forbidden" or filtered. T0547 346 :E 1w8kA 230 :E T0547 348 :KLILKKQ 1w8kA 232 :LVYLSKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=69747 # 1qsgA.346.244 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)K353 (1qsgA)G249 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :ENKLILK 1qsgA 242 :GEVVHVD T0547 354 :Q 1qsgA 250 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=69749 # 1xxaA.346.51 read from T0547.t04.many.frag # found chain 1xxaA in template set Warning: unaligning (T0547)Q354 (1xxaA)G138 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :ENKLILKK 1xxaA 130 :TIFTTPAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=69750 # 1vioA.346.174 read from T0547.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0547)K352 (1vioA)S179 because G (3-10) conformation "forbidden" or filtered. T0547 346 :ENKLIL 1vioA 173 :NVNLTI T0547 353 :KQ 1vioA 180 :EG Number of specific fragments extracted= 2 number of extra gaps= 1 total=69752 # 1sx5A.346.71 read from T0547.t04.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)E346 (1sx5A)P73 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1sx5A)Y78 because Y (epsilon') conformation "forbidden" or filtered. T0547 347 :NKLI 1sx5A 74 :DFTL T0547 352 :KKQ 1sx5A 79 :KPS Number of specific fragments extracted= 2 number of extra gaps= 2 total=69754 # 2f06A.346.111 read from T0547.t04.many.frag # found chain 2f06A in template set T0547 346 :ENKLILKKQ 2f06A 109 :ANVVIRPSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=69755 # 1ckmA.346.98 read from T0547.t04.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)K352 (1ckmA)D105 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :ENKLIL 1ckmA 99 :KVCTII T0547 353 :KQ 1ckmA 106 :RA Number of specific fragments extracted= 2 number of extra gaps= 1 total=69757 # 1gx5A.346.378 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)K353 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. T0547 346 :ENKLILK 1gx5A 379 :KRVYYLT T0547 354 :Q 1gx5A 387 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=69759 # 1knwA.347.293 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 347 :NKLILKKQN 1knwA 294 :HFVLVDAGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=69760 # 1p57A.347.70 read from T0547.t04.many.frag # found chain 1p57A in training set Warning: unaligning (T0547)K348 (1p57A)F72 because E (beta_S) conformation "forbidden" or filtered. T0547 347 :N 1p57A 71 :G T0547 349 :LILKKQN 1p57A 73 :FCVDEGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=69762 # 1xy7A.347.27 read from T0547.t04.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)Q354 (1xy7A)Q35 because T (delta_L) conformation "forbidden" or filtered. T0547 347 :NKLILKK 1xy7A 28 :QMLLVEA T0547 355 :N 1xy7A 36 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=69764 # 7odcA.347.313 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Q354 (7odcA)G321 because Y (epsilon') conformation "forbidden" or filtered. T0547 347 :NKLILKK 7odcA 314 :FMYYVND T0547 355 :N 7odcA 322 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=69766 # 1yj7A.347.37 read from T0547.t04.many.frag # found chain 1yj7A in training set T0547 347 :NKLILKKQN 1yj7A 57 :MTLSVAAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=69767 # 1r7mA.347.195 read from T0547.t04.many.frag # found chain 1r7mA in template set T0547 347 :NKLILKKQN 1r7mA 196 :PIIYIDSMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=69768 # 1vhvA.347.232 read from T0547.t04.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)Q354 (1vhvA)T227 because E (beta_S) conformation "forbidden" or filtered. T0547 347 :NKLILKK 1vhvA 220 :VMVVLAK T0547 355 :N 1vhvA 228 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=69770 # 2fimA.347.111 read from T0547.t04.many.frag # found chain 2fimA in template set T0547 347 :NKLILKKQN 2fimA 325 :RFTVFDNGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=69771 # 1kjqA.347.229 read from T0547.t04.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)K352 (1kjqA)P236 because C (cis) conformation "forbidden" or filtered. T0547 347 :NKLIL 1kjqA 231 :RESWQ T0547 353 :KQN 1kjqA 237 :QQM Number of specific fragments extracted= 2 number of extra gaps= 1 total=69773 # 1t77A.347.28 read from T0547.t04.many.frag # found chain 1t77A in template set T0547 347 :NKLILKKQN 1t77A 2104 :LYFEVDEED Number of specific fragments extracted= 1 number of extra gaps= 0 total=69774 # 1i4wA.347.215 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 347 :NKLILKKQN 1i4wA 204 :LIAISDANE Number of specific fragments extracted= 1 number of extra gaps= 0 total=69775 # 1vetA.347.31 read from T0547.t04.many.frag # found chain 1vetA in template set T0547 347 :NKLILKKQN 1vetA 32 :VIKVANDSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=69776 # 1gx5A.347.380 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L351 (1gx5A)T385 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. T0547 347 :NKLI 1gx5A 381 :VYYL T0547 353 :KQN 1gx5A 387 :DPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=69778 # 1sx5A.347.72 read from T0547.t04.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)L351 (1sx5A)Y78 because Y (epsilon') conformation "forbidden" or filtered. T0547 347 :NKLI 1sx5A 74 :DFTL T0547 352 :KKQN 1sx5A 79 :KPSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=69780 # 1atg.347.105 read from T0547.t04.many.frag # found chain 1atg in training set Warning: unaligning (T0547)K352 (1atg)N112 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :NKLIL 1atg 107 :HIAIS T0547 353 :KQN 1atg 113 :PQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=69782 # 1ckmA.347.99 read from T0547.t04.many.frag # found chain 1ckmA in template set T0547 347 :NKLILKKQN 1ckmA 100 :VCTIIDRAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=69783 # 1utcA.347.48 read from T0547.t04.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)K352 (1utcA)D54 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :NKLIL 1utcA 49 :QVVII T0547 353 :KQN 1utcA 55 :MND Number of specific fragments extracted= 2 number of extra gaps= 1 total=69785 # 1xxaA.347.52 read from T0547.t04.many.frag # found chain 1xxaA in template set Warning: unaligning (T0547)Q354 (1xxaA)G138 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1xxaA)F139 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :NKLILKK 1xxaA 131 :IFTTPAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=69786 # 2f06A.347.112 read from T0547.t04.many.frag # found chain 2f06A in template set Warning: unaligning (T0547)K348 (2f06A)V111 because E (beta_S) conformation "forbidden" or filtered. T0547 347 :N 2f06A 110 :N T0547 349 :LILKKQN 2f06A 112 :VIRPSNM Number of specific fragments extracted= 2 number of extra gaps= 1 total=69788 # 1gxuA.347.45 read from T0547.t04.many.frag # found chain 1gxuA in training set T0547 347 :NKLILKKQN 1gxuA 46 :VEVRLREDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=69789 # 1bob.347.133 read from T0547.t04.many.frag # found chain 1bob in template set Warning: unaligning (T0547)K352 (1bob)S139 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1bob)S140 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :NKLIL 1bob 134 :FVVYK T0547 354 :QN 1bob 141 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69791 # 1xszA.347.203 read from T0547.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)N347 (1xszA)G202 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1xszA)S207 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLIL 1xszA 203 :YELT T0547 353 :KQN 1xszA 208 :TTL Number of specific fragments extracted= 2 number of extra gaps= 2 total=69793 # 1ssxA.347.64 read from T0547.t04.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)N347 (1ssxA)A104 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1ssxA)T109 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLIL 1ssxA 105 :WVSL T0547 353 :KQN 1ssxA 110 :SAQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=69795 # 1d5tA.347.224 read from T0547.t04.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)N347 because of BadResidue code BAD_PEPTIDE in next template residue (1d5tA)Y224 Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE at template residue (1d5tA)Y224 Warning: unaligning (T0547)Q354 (1d5tA)G230 because S (epsilon) conformation "forbidden" or filtered. T0547 349 :LILKK 1d5tA 225 :LYPLY T0547 355 :N 1d5tA 231 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=69797 # 1gw5S.347.66 read from T0547.t04.many.frag # found chain 1gw5S in template set Warning: unaligning (T0547)K348 (1gw5S)C68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1gw5S)V71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1gw5S)D72 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :N 1gw5S 67 :F T0547 349 :LI 1gw5S 69 :IC T0547 353 :KQN 1gw5S 73 :VND Number of specific fragments extracted= 3 number of extra gaps= 2 total=69800 # 1a8y.347.250 read from T0547.t04.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)K348 (1a8y)V252 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1a8y)D259 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :N 1a8y 251 :I T0547 349 :LILKKQ 1a8y 253 :AFAEEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=69802 # 1o59A.347.159 read from T0547.t04.many.frag # found chain 1o59A in template set T0547 347 :NKLILKKQN 1o59A 148 :RHLFVRGNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=69803 # 1qsgA.347.245 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)K353 (1qsgA)G249 because T (delta_L) conformation "forbidden" or filtered. T0547 347 :NKLILK 1qsgA 243 :EVVHVD T0547 354 :QN 1qsgA 250 :GF Number of specific fragments extracted= 2 number of extra gaps= 1 total=69805 # 1ia9A.347.164 read from T0547.t04.many.frag # found chain 1ia9A in template set Warning: unaligning (T0547)N347 (1ia9A)Q1713 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1ia9A)F1715 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1ia9A)E1718 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :K 1ia9A 1714 :W T0547 350 :IL 1ia9A 1716 :AV T0547 353 :KQN 1ia9A 1719 :ECM Number of specific fragments extracted= 3 number of extra gaps= 3 total=69808 # 1xeaA.347.251 read from T0547.t04.many.frag # found chain 1xeaA in template set T0547 347 :NKLILKKQN 1xeaA 252 :SRVALKDWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=69809 # 1xy7A.348.28 read from T0547.t04.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)K352 (1xy7A)E33 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLIL 1xy7A 29 :MLLV T0547 353 :KQNP 1xy7A 34 :AQKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69811 # 1p57A.348.71 read from T0547.t04.many.frag # found chain 1p57A in training set Warning: unaligning (T0547)K352 (1p57A)D76 because N (gamma') conformation "forbidden" or filtered. T0547 348 :KLIL 1p57A 72 :FFCV T0547 353 :KQNP 1p57A 77 :EGRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69813 # 1knwA.348.294 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K352 (1knwA)D299 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1knwA)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLIL 1knwA 295 :FVLV T0547 353 :K 1knwA 300 :A T0547 355 :NP 1knwA 302 :FN Number of specific fragments extracted= 3 number of extra gaps= 2 total=69816 # 1yj7A.348.38 read from T0547.t04.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)K348 (1yj7A)T58 because E (beta_S) conformation "forbidden" or filtered. T0547 349 :LILKKQNP 1yj7A 59 :LSVAAADF Number of specific fragments extracted= 1 number of extra gaps= 1 total=69817 # 1gxuA.348.46 read from T0547.t04.many.frag # found chain 1gxuA in training set Warning: unaligning (T0547)K353 (1gxuA)E52 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLILK 1gxuA 47 :EVRLR T0547 354 :QNP 1gxuA 53 :DPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=69819 # 7odcA.348.314 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Q354 (7odcA)G321 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLILKK 7odcA 315 :MYYVND T0547 355 :NP 7odcA 322 :VY Number of specific fragments extracted= 2 number of extra gaps= 1 total=69821 # 1t77A.348.29 read from T0547.t04.many.frag # found chain 1t77A in template set T0547 348 :KLILKKQNP 1t77A 2105 :YFEVDEEDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=69822 # 1i4wA.348.216 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 348 :KLILKKQNP 1i4wA 205 :IAISDANEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=69823 # 1sx5A.348.73 read from T0547.t04.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)L351 (1sx5A)Y78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1sx5A)K79 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLI 1sx5A 75 :FTL T0547 353 :KQNP 1sx5A 80 :PSEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=69825 # 1ckmA.348.100 read from T0547.t04.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)N355 (1ckmA)M108 because L (left) conformation "forbidden" or filtered. T0547 348 :KLILKKQ 1ckmA 101 :CTIIDRA T0547 356 :P 1ckmA 109 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=69827 # 1r7mA.348.196 read from T0547.t04.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)K348 (1r7mA)I197 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1r7mA)D201 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LIL 1r7mA 198 :IYI T0547 353 :KQNP 1r7mA 202 :SMSY Number of specific fragments extracted= 2 number of extra gaps= 2 total=69829 # 1e9rA.348.243 read from T0547.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)L351 (1e9rA)W317 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLI 1e9rA 314 :FIT T0547 352 :KKQNP 1e9rA 318 :REDMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=69831 # 1xxaA.348.53 read from T0547.t04.many.frag # found chain 1xxaA in template set Warning: unaligning (T0547)K352 (1xxaA)A136 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1xxaA)G138 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1xxaA)F139 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLIL 1xxaA 132 :FTTP T0547 353 :K 1xxaA 137 :N T0547 356 :P 1xxaA 140 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=69834 # 1kjqA.348.230 read from T0547.t04.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)K352 (1kjqA)P236 because C (cis) conformation "forbidden" or filtered. T0547 348 :KLIL 1kjqA 232 :ESWQ T0547 353 :KQNP 1kjqA 237 :QQMS Number of specific fragments extracted= 2 number of extra gaps= 1 total=69836 # 1qsgA.348.246 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)K348 (1qsgA)V244 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1qsgA)G249 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1qsgA)G250 because T (delta_L) conformation "forbidden" or filtered. T0547 349 :LILK 1qsgA 245 :VHVD T0547 355 :NP 1qsgA 251 :FS Number of specific fragments extracted= 2 number of extra gaps= 2 total=69838 # 1vetA.348.32 read from T0547.t04.many.frag # found chain 1vetA in template set T0547 348 :KLILKKQNP 1vetA 33 :IKVANDSAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=69839 # 1xszA.348.204 read from T0547.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)K352 (1xszA)S207 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLIL 1xszA 203 :YELT T0547 353 :KQNP 1xszA 208 :TTLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=69841 # 1d5tA.348.225 read from T0547.t04.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)K348 because of BadResidue code BAD_PEPTIDE at template residue (1d5tA)Y224 T0547 349 :LILKKQNP 1d5tA 225 :LYPLYGLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=69842 # 1ssxA.348.65 read from T0547.t04.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)P356 (1ssxA)T113 because D (zeta) conformation "forbidden" or filtered. T0547 348 :KLILKKQN 1ssxA 105 :WVSLTSAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=69843 # 2fimA.348.112 read from T0547.t04.many.frag # found chain 2fimA in template set T0547 348 :KLILKKQNP 2fimA 326 :FTVFDNGQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=69844 # 1atg.348.106 read from T0547.t04.many.frag # found chain 1atg in training set Warning: unaligning (T0547)P356 (1atg)A116 because D (zeta) conformation "forbidden" or filtered. T0547 348 :KLILKKQN 1atg 108 :IAISNPQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=69845 # 1utcA.348.49 read from T0547.t04.many.frag # found chain 1utcA in template set T0547 348 :KLILKKQNP 1utcA 50 :VVIIDMNDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=69846 # 1vioA.348.176 read from T0547.t04.many.frag # found chain 1vioA in training set T0547 348 :KLILKKQNP 1vioA 175 :NLTISEGRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=69847 # 1mpgA.348.59 read from T0547.t04.many.frag # found chain 1mpgA in training set T0547 348 :KLILKKQNP 1mpgA 60 :HINLSAGLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=69848 # 1vhvA.348.233 read from T0547.t04.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)Q354 (1vhvA)T227 because E (beta_S) conformation "forbidden" or filtered. T0547 348 :KLILKK 1vhvA 221 :MVVLAK T0547 355 :NP 1vhvA 228 :LH Number of specific fragments extracted= 2 number of extra gaps= 1 total=69850 # 1pfbA.348.20 read from T0547.t04.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)Q354 (1pfbA)G49 because T (delta_L) conformation "forbidden" or filtered. T0547 348 :KLILKK 1pfbA 43 :YRVKWK T0547 355 :NP 1pfbA 50 :WN Number of specific fragments extracted= 2 number of extra gaps= 1 total=69852 # 2f06A.348.113 read from T0547.t04.many.frag # found chain 2f06A in template set Warning: unaligning (T0547)Q354 (2f06A)N117 because E (beta_S) conformation "forbidden" or filtered. T0547 348 :KLILKK 2f06A 111 :VVIRPS T0547 355 :NP 2f06A 118 :MD Number of specific fragments extracted= 2 number of extra gaps= 1 total=69854 # 1ia9A.348.165 read from T0547.t04.many.frag # found chain 1ia9A in template set Warning: unaligning (T0547)L349 (1ia9A)F1715 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1ia9A)E1718 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1ia9A)C1720 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1ia9A)T1722 because E (beta_S) conformation "forbidden" or filtered. T0547 348 :K 1ia9A 1714 :W T0547 350 :IL 1ia9A 1716 :AV T0547 353 :K 1ia9A 1719 :E T0547 355 :N 1ia9A 1721 :M Number of specific fragments extracted= 4 number of extra gaps= 4 total=69858 # 1s2oA.348.117 read from T0547.t04.many.frag # found chain 1s2oA in training set Warning: unaligning (T0547)N355 (1s2oA)A125 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLILKKQ 1s2oA 118 :SYHLDPQ T0547 356 :P 1s2oA 126 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=69860 # 1xeaA.348.252 read from T0547.t04.many.frag # found chain 1xeaA in template set Warning: unaligning (T0547)Q354 (1xeaA)W259 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1xeaA)T260 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLILKK 1xeaA 253 :RVALKD T0547 356 :P 1xeaA 261 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=69862 # 1xy7A.349.29 read from T0547.t04.many.frag # found chain 1xy7A in training set T0547 349 :LILKKQNPK 1xy7A 30 :LLVEAQKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=69863 # 1p57A.349.72 read from T0547.t04.many.frag # found chain 1p57A in training set Warning: unaligning (T0547)K357 (1p57A)P81 because G (3-10) conformation "forbidden" or filtered. T0547 349 :LILKKQNP 1p57A 73 :FCVDEGRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=69864 # 1knwA.349.295 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 349 :LILKKQNPK 1knwA 296 :VLVDAGFND Number of specific fragments extracted= 1 number of extra gaps= 0 total=69865 # 1t77A.349.30 read from T0547.t04.many.frag # found chain 1t77A in template set T0547 349 :LILKKQNPK 1t77A 2106 :FEVDEEDPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=69866 # 1yj7A.349.39 read from T0547.t04.many.frag # found chain 1yj7A in training set T0547 349 :LILKKQNPK 1yj7A 59 :LSVAAADFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=69867 # 1gxuA.349.47 read from T0547.t04.many.frag # found chain 1gxuA in training set T0547 349 :LILKKQNP 1gxuA 48 :VRLREDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=69868 # 1e9rA.349.244 read from T0547.t04.many.frag # found chain 1e9rA in template set T0547 349 :LILKKQNPK 1e9rA 315 :ITWREDMGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=69869 # 1qsgA.349.247 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)Q354 (1qsgA)G250 because T (delta_L) conformation "forbidden" or filtered. T0547 349 :LILKK 1qsgA 245 :VHVDG T0547 355 :NPK 1qsgA 251 :FSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=69871 # 7odcA.349.315 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Q354 (7odcA)G321 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K357 (7odcA)G324 because Y (epsilon') conformation "forbidden" or filtered. T0547 349 :LILKK 7odcA 316 :YYVND T0547 355 :NP 7odcA 322 :VY Number of specific fragments extracted= 2 number of extra gaps= 2 total=69873 # 1mpgA.349.60 read from T0547.t04.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)K352 (1mpgA)S64 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LIL 1mpgA 61 :INL T0547 353 :KQNPK 1mpgA 65 :AGLEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=69875 # 1sx5A.349.74 read from T0547.t04.many.frag # found chain 1sx5A in training set T0547 349 :LILKKQNPK 1sx5A 76 :TLYKPSEPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=69876 # 1i4wA.349.217 read from T0547.t04.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)K352 (1i4wA)D209 because E (beta_S) conformation "forbidden" or filtered. T0547 349 :LIL 1i4wA 206 :AIS T0547 353 :KQNPK 1i4wA 210 :ANELK Number of specific fragments extracted= 2 number of extra gaps= 1 total=69878 # 1vmbA.349.82 read from T0547.t04.many.frag # found chain 1vmbA in training set Warning: unaligning (T0547)L349 (1vmbA)F71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1vmbA)C73 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :I 1vmbA 72 :R T0547 352 :KKQNPK 1vmbA 74 :DGQNLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=69880 # 1ysjA.349.317 read from T0547.t04.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)K352 (1ysjA)D297 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LIL 1ysjA 294 :VQN T0547 353 :KQNPK 1ysjA 298 :GTFLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=69882 # 1xxaA.349.54 read from T0547.t04.many.frag # found chain 1xxaA in template set Warning: unaligning (T0547)K352 (1xxaA)A136 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1xxaA)F139 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LIL 1xxaA 133 :TTP T0547 353 :KQ 1xxaA 137 :NG T0547 356 :PK 1xxaA 140 :TV Number of specific fragments extracted= 3 number of extra gaps= 2 total=69885 # 2aj6A.349.13 read from T0547.t04.many.frag # found chain 2aj6A in training set Warning: unaligning (T0547)L349 (2aj6A)R2 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :ILKKQNPK 2aj6A 3 :TLNKDEHN Number of specific fragments extracted= 1 number of extra gaps= 1 total=69886 # 1vetA.349.33 read from T0547.t04.many.frag # found chain 1vetA in template set Warning: unaligning (T0547)N355 (1vetA)A40 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LILKKQ 1vetA 34 :KVANDS T0547 356 :PK 1vetA 41 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=69888 # 1r7mA.349.197 read from T0547.t04.many.frag # found chain 1r7mA in template set T0547 349 :LILKKQNPK 1r7mA 198 :IYIDSMSYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=69889 # 1vioA.349.177 read from T0547.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0547)Q354 (1vioA)G181 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K357 (1vioA)H184 because L (left) conformation "forbidden" or filtered. T0547 349 :LILKK 1vioA 176 :LTISE T0547 355 :NP 1vioA 182 :RY Number of specific fragments extracted= 2 number of extra gaps= 2 total=69891 # 1kuuA.349.40 read from T0547.t04.many.frag # found chain 1kuuA in template set T0547 349 :LILKKQNPK 1kuuA 41 :VVPVEGHER Number of specific fragments extracted= 1 number of extra gaps= 0 total=69892 # 1nmoA.349.168 read from T0547.t04.many.frag # found chain 1nmoA in template set Warning: unaligning (T0547)I350 (1nmoA)W170 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1nmoA)G173 because S (epsilon) conformation "forbidden" or filtered. T0547 349 :L 1nmoA 169 :A T0547 351 :LK 1nmoA 171 :CT T0547 354 :QNPK 1nmoA 174 :GGQS Number of specific fragments extracted= 3 number of extra gaps= 2 total=69895 # 1tuoA.349.286 read from T0547.t04.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)N355 (1tuoA)V293 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LILKKQ 1tuoA 287 :AVKNFA T0547 356 :PK 1tuoA 294 :TW Number of specific fragments extracted= 2 number of extra gaps= 1 total=69897 # 1xszA.349.205 read from T0547.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)K352 (1xszA)S207 because Y (epsilon') conformation "forbidden" or filtered. T0547 349 :LIL 1xszA 204 :ELT T0547 353 :KQNPK 1xszA 208 :TTLNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=69899 # 1s99A.349.153 read from T0547.t04.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)K353 (1s99A)G158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1s99A)D159 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LILK 1s99A 154 :SELD T0547 355 :NPK 1s99A 160 :AHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=69901 # 1fjgS.349.59 read from T0547.t04.many.frag # found chain 1fjgS in template set Warning: unaligning (T0547)K357 (1fjgS)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 349 :LILKKQNP 1fjgS 60 :VYITENMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=69902 # 1s2oA.349.118 read from T0547.t04.many.frag # found chain 1s2oA in training set Warning: unaligning (T0547)L349 (1s2oA)Y119 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :ILKKQNPK 1s2oA 120 :HLDPQACP Number of specific fragments extracted= 1 number of extra gaps= 1 total=69903 # 1kjqA.349.231 read from T0547.t04.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)I350 (1kjqA)W234 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1kjqA)P236 because C (cis) conformation "forbidden" or filtered. T0547 349 :L 1kjqA 233 :S T0547 351 :L 1kjqA 235 :Q T0547 353 :KQNPK 1kjqA 237 :QQMSP Number of specific fragments extracted= 3 number of extra gaps= 2 total=69906 # 1h70A.349.212 read from T0547.t04.many.frag # found chain 1h70A in training set T0547 349 :LILKKQNPK 1h70A 212 :VIMPAGYPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=69907 # 1gsa.349.170 read from T0547.t04.many.frag # found chain 1gsa in template set T0547 349 :LILKKQNPK 1gsa 171 :FRVKEGDPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=69908 # 3proC.349.129 read from T0547.t04.many.frag # found chain 3proC in training set Warning: unaligning (T0547)L349 (3proC)V130 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (3proC)D134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (3proC)G135 because T (delta_L) conformation "forbidden" or filtered. T0547 350 :ILK 3proC 131 :KVD T0547 355 :NPK 3proC 136 :ATD Number of specific fragments extracted= 2 number of extra gaps= 2 total=69910 # 1xy7A.350.30 read from T0547.t04.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)Q354 (1xy7A)Q35 because T (delta_L) conformation "forbidden" or filtered. T0547 350 :ILKK 1xy7A 31 :LVEA T0547 355 :NPKL 1xy7A 36 :KVGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=69912 # 1knwA.350.296 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K352 (1knwA)D299 because G (3-10) conformation "forbidden" or filtered. T0547 350 :IL 1knwA 297 :LV T0547 353 :KQNPKL 1knwA 300 :AGFNDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69914 # 1gxuA.350.48 read from T0547.t04.many.frag # found chain 1gxuA in training set Warning: unaligning (T0547)K353 (1gxuA)E52 because P (beta_P) conformation "forbidden" or filtered. T0547 350 :ILK 1gxuA 49 :RLR T0547 354 :QNP 1gxuA 53 :DPE T0547 358 :L 1gxuA 57 :F Number of specific fragments extracted= 3 number of extra gaps= 1 total=69917 # 1ysjA.350.318 read from T0547.t04.many.frag # found chain 1ysjA in template set Warning: unaligning (T0547)N355 (1ysjA)F300 because G (3-10) conformation "forbidden" or filtered. T0547 350 :ILKKQ 1ysjA 295 :QNDGT T0547 356 :PKL 1ysjA 301 :LNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=69919 # 2aj6A.350.14 read from T0547.t04.many.frag # found chain 2aj6A in training set T0547 350 :ILKKQNPKL 2aj6A 3 :TLNKDEHNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=69920 # 1p57A.350.73 read from T0547.t04.many.frag # found chain 1p57A in training set Warning: unaligning (T0547)K352 (1p57A)D76 because N (gamma') conformation "forbidden" or filtered. T0547 350 :IL 1p57A 74 :CV T0547 353 :KQNPKL 1p57A 77 :EGRLPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=69922 # 1e9rA.350.245 read from T0547.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)L351 (1e9rA)W317 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1e9rA)R318 because P (beta_P) conformation "forbidden" or filtered. T0547 350 :I 1e9rA 316 :T T0547 353 :KQNPKL 1e9rA 319 :EDMGPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=69924 # 1mpgA.350.61 read from T0547.t04.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)K352 (1mpgA)S64 because P (beta_P) conformation "forbidden" or filtered. T0547 350 :IL 1mpgA 62 :NL T0547 353 :KQNPKL 1mpgA 65 :AGLEPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69926 # 1nmoA.350.169 read from T0547.t04.many.frag # found chain 1nmoA in template set Warning: unaligning (T0547)K353 (1nmoA)G173 because S (epsilon) conformation "forbidden" or filtered. T0547 350 :ILK 1nmoA 170 :WCT T0547 354 :QNPKL 1nmoA 174 :GGQSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=69928 # 1t77A.350.31 read from T0547.t04.many.frag # found chain 1t77A in template set T0547 350 :ILKKQNPKL 1t77A 2107 :EVDEEDPNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=69929 # 1g61A.350.118 read from T0547.t04.many.frag # found chain 1g61A in training set T0547 350 :ILKKQNPKL 1g61A 2119 :LISPELKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=69930 # 1yj7A.350.40 read from T0547.t04.many.frag # found chain 1yj7A in training set T0547 350 :ILKKQNPKL 1yj7A 60 :SVAAADFVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=69931 # 1qsgA.350.248 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)K353 (1qsgA)G249 because T (delta_L) conformation "forbidden" or filtered. T0547 350 :ILK 1qsgA 246 :HVD T0547 354 :QNPKL 1qsgA 250 :GFSIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=69933 # 1h70A.350.213 read from T0547.t04.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)K352 (1h70A)P215 because P (beta_P) conformation "forbidden" or filtered. T0547 350 :IL 1h70A 213 :IM T0547 353 :KQNPKL 1h70A 216 :AGYPRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=69935 # 1vmbA.350.83 read from T0547.t04.many.frag # found chain 1vmbA in training set Warning: unaligning (T0547)L351 (1vmbA)C73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1vmbA)Q76 because G (3-10) conformation "forbidden" or filtered. T0547 350 :I 1vmbA 72 :R T0547 352 :KK 1vmbA 74 :DG T0547 355 :NPKL 1vmbA 77 :NLQE Number of specific fragments extracted= 3 number of extra gaps= 2 total=69938 # 1tuoA.350.287 read from T0547.t04.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)K352 (1tuoA)N290 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1tuoA)V293 because P (beta_P) conformation "forbidden" or filtered. T0547 350 :IL 1tuoA 288 :VK T0547 353 :KQ 1tuoA 291 :FA T0547 356 :PKL 1tuoA 294 :TWL Number of specific fragments extracted= 3 number of extra gaps= 2 total=69941 # 3proC.350.130 read from T0547.t04.many.frag # found chain 3proC in training set Warning: unaligning (T0547)K352 (3proC)D133 because P (beta_P) conformation "forbidden" or filtered. T0547 350 :IL 3proC 131 :KV T0547 353 :KQNPKL 3proC 134 :DGATDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=69943 # 2fnuA.350.288 read from T0547.t04.many.frag # found chain 2fnuA in training set T0547 350 :ILKKQNPKL 2fnuA 289 :LMHQKFFTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=69944 # 7odcA.350.316 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 350 :ILKKQNPKL 7odcA 317 :YVNDGVYGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=69945 # 1vioA.350.178 read from T0547.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0547)K357 (1vioA)H184 because L (left) conformation "forbidden" or filtered. T0547 350 :ILKKQNP 1vioA 177 :TISEGRY T0547 358 :L 1vioA 185 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=69947 # 1s99A.350.154 read from T0547.t04.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)K352 (1s99A)D157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1s99A)G158 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :IL 1s99A 155 :EL T0547 354 :QNPKL 1s99A 159 :DAHDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=69949 # 1i4wA.350.218 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 350 :ILKKQNPKL 1i4wA 207 :ISDANELKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=69950 # 1fjgS.350.60 read from T0547.t04.many.frag # found chain 1fjgS in template set Warning: unaligning (T0547)K357 (1fjgS)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 350 :ILKKQNP 1fjgS 61 :YITENMV T0547 358 :L 1fjgS 69 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=69952 # 1gsa.350.171 read from T0547.t04.many.frag # found chain 1gsa in template set Warning: unaligning (T0547)K352 (1gsa)K174 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1gsa)D177 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K357 (1gsa)N179 because G (3-10) conformation "forbidden" or filtered. T0547 350 :IL 1gsa 172 :RV T0547 353 :KQ 1gsa 175 :EG T0547 356 :P 1gsa 178 :P T0547 358 :L 1gsa 180 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=69956 # 2f5tX.350.28 read from T0547.t04.many.frag # found chain 2f5tX in training set T0547 350 :ILKKQNPKL 2f5tX 138 :VTPSEFFET Number of specific fragments extracted= 1 number of extra gaps= 0 total=69957 # 1kjqA.350.232 read from T0547.t04.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)I350 (1kjqA)W234 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1kjqA)P236 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1kjqA)M239 because E (beta_S) conformation "forbidden" or filtered. T0547 351 :L 1kjqA 235 :Q T0547 353 :KQ 1kjqA 237 :QQ T0547 356 :PKL 1kjqA 240 :SPL Number of specific fragments extracted= 3 number of extra gaps= 3 total=69960 # 1gesA.350.406 read from T0547.t04.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)K352 (1gesA)G409 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :IL 1gesA 407 :GI T0547 353 :KQNPKL 1gesA 410 :FGMDEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=69962 # 1xszA.350.206 read from T0547.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)K352 (1xszA)S207 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :IL 1xszA 205 :LT T0547 353 :KQNPKL 1xszA 208 :TTLNKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=69964 # 1kuuA.350.41 read from T0547.t04.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)Q354 (1kuuA)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 350 :ILKK 1kuuA 42 :VPVE T0547 355 :NPKL 1kuuA 47 :HERD Number of specific fragments extracted= 2 number of extra gaps= 1 total=69966 # 1r7mA.350.198 read from T0547.t04.many.frag # found chain 1r7mA in template set T0547 350 :ILKKQNPKL 1r7mA 199 :YIDSMSYLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=69967 # 1knwA.351.297 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 351 :LKKQNPKLI 1knwA 298 :VDAGFNDLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=69968 # 2aj6A.351.15 read from T0547.t04.many.frag # found chain 2aj6A in training set T0547 351 :LKKQNPKLI 2aj6A 4 :LNKDEHNYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=69969 # 1nmoA.351.170 read from T0547.t04.many.frag # found chain 1nmoA in template set Warning: unaligning (T0547)K352 (1nmoA)T172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1nmoA)G173 because S (epsilon) conformation "forbidden" or filtered. T0547 351 :L 1nmoA 171 :C T0547 354 :QNPKLI 1nmoA 174 :GGQSFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=69971 # 1ysjA.351.319 read from T0547.t04.many.frag # found chain 1ysjA in template set T0547 351 :LKKQNPKLI 1ysjA 296 :NDGTFLNAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=69972 # 1xy7A.351.31 read from T0547.t04.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)Q354 (1xy7A)Q35 because T (delta_L) conformation "forbidden" or filtered. T0547 351 :LKK 1xy7A 32 :VEA T0547 355 :NPKLI 1xy7A 36 :KVGDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=69974 # 1tuoA.351.288 read from T0547.t04.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)N355 (1tuoA)V293 because P (beta_P) conformation "forbidden" or filtered. T0547 351 :LKKQ 1tuoA 289 :KNFA T0547 356 :PKLI 1tuoA 294 :TWLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69976 # 1e9rA.351.246 read from T0547.t04.many.frag # found chain 1e9rA in template set T0547 351 :LKKQNPKLI 1e9rA 317 :WREDMGPAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=69977 # 1g61A.351.119 read from T0547.t04.many.frag # found chain 1g61A in training set T0547 351 :LKKQNPKLI 1g61A 2120 :ISPELKDFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=69978 # 1gxuA.351.49 read from T0547.t04.many.frag # found chain 1gxuA in training set Warning: unaligning (T0547)K353 (1gxuA)E52 because P (beta_P) conformation "forbidden" or filtered. T0547 351 :LK 1gxuA 50 :LR T0547 354 :QNP 1gxuA 53 :DPE T0547 358 :LI 1gxuA 57 :FL Number of specific fragments extracted= 3 number of extra gaps= 1 total=69981 # 3proC.351.131 read from T0547.t04.many.frag # found chain 3proC in training set T0547 351 :LKKQNPKLI 3proC 132 :VDDGATDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=69982 # 1mpgA.351.62 read from T0547.t04.many.frag # found chain 1mpgA in training set T0547 351 :LKKQNPKLI 1mpgA 63 :LSAGLEPVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=69983 # 2f8aA.351.127 read from T0547.t04.many.frag # found chain 2f8aA in training set T0547 351 :LKKQNPKLI 2f8aA 116 :NGAGAHPLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=69984 # 1vioA.351.179 read from T0547.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0547)Q354 (1vioA)G181 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K357 (1vioA)H184 because L (left) conformation "forbidden" or filtered. T0547 351 :LKK 1vioA 178 :ISE T0547 355 :NP 1vioA 182 :RY T0547 358 :LI 1vioA 185 :QV Number of specific fragments extracted= 3 number of extra gaps= 2 total=69987 # 1vmbA.351.84 read from T0547.t04.many.frag # found chain 1vmbA in training set Warning: unaligning (T0547)L351 (1vmbA)C73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1vmbA)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 352 :K 1vmbA 74 :D T0547 354 :QNPKLI 1vmbA 76 :QNLQEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=69989 # 1h70A.351.214 read from T0547.t04.many.frag # found chain 1h70A in training set T0547 351 :LKKQNPKLI 1h70A 214 :MPAGYPRTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=69990 # 1p57A.351.74 read from T0547.t04.many.frag # found chain 1p57A in training set T0547 351 :LKKQNPKLI 1p57A 75 :VDEGRLPHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=69991 # 1s99A.351.155 read from T0547.t04.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)K352 (1s99A)D157 because Y (epsilon') conformation "forbidden" or filtered. T0547 351 :L 1s99A 156 :L T0547 353 :KQNPKLI 1s99A 158 :GDAHDVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=69993 # 1f74A.351.164 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 351 :LKKQNPKLI 1f74A 165 :FTAGDFYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=69994 # 2fnuA.351.289 read from T0547.t04.many.frag # found chain 2fnuA in training set T0547 351 :LKKQNPKLI 2fnuA 290 :MHQKFFTCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=69995 # 1uylA.351.189 read from T0547.t04.many.frag # found chain 1uylA in training set Warning: unaligning (T0547)K352 (1uylA)K191 because P (beta_P) conformation "forbidden" or filtered. T0547 351 :L 1uylA 190 :L T0547 353 :KQNPKLI 1uylA 192 :EDQTEYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=69997 # 2f5tX.351.29 read from T0547.t04.many.frag # found chain 2f5tX in training set Warning: unaligning (T0547)K352 (2f5tX)P140 because P (beta_P) conformation "forbidden" or filtered. T0547 351 :L 2f5tX 139 :T T0547 353 :KQNPKLI 2f5tX 141 :SEFFETI Number of specific fragments extracted= 2 number of extra gaps= 1 total=69999 2fb5A expands to /projects/compbio/data/pdb/2fb5.pdb.gz 2fb5A:# 2fb5A.351.159 read from T0547.t04.many.frag # adding 2fb5A to template set # found chain 2fb5A in template set T0547 351 :LKKQNPKLI 2fb5A 160 :VDPELGTRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=70000 # 1qsgA.351.249 read from T0547.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)L351 (1qsgA)V247 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1qsgA)D248 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1qsgA)G249 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1qsgA)G250 because T (delta_L) conformation "forbidden" or filtered. T0547 355 :NPKLI 1qsgA 251 :FSIAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=70001 # 1oltA.351.424 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 351 :LKKQNPKLI 1oltA 425 :VTAKGRLLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70002 # 1t77A.351.32 read from T0547.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)K353 (1t77A)E2110 because G (3-10) conformation "forbidden" or filtered. T0547 351 :LK 1t77A 2108 :VD T0547 354 :QNPKLI 1t77A 2111 :EDPNFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=70004 # 1i4wA.351.219 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 351 :LKKQNPKLI 1i4wA 208 :SDANELKGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70005 # 1gesA.351.407 read from T0547.t04.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)K352 (1gesA)G409 because Y (epsilon') conformation "forbidden" or filtered. T0547 351 :L 1gesA 408 :I T0547 353 :KQNPKLI 1gesA 410 :FGMDEML Number of specific fragments extracted= 2 number of extra gaps= 1 total=70007 # 1l5aA.351.214 read from T0547.t04.many.frag # found chain 1l5aA in template set T0547 351 :LKKQNPKLI 1l5aA 215 :LNSQLNHLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70008 # 1d5tA.351.228 read from T0547.t04.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)K353 (1d5tA)Y229 because T (delta_L) conformation "forbidden" or filtered. T0547 351 :LK 1d5tA 227 :PL T0547 354 :QNPKLI 1d5tA 230 :GLGELP Number of specific fragments extracted= 2 number of extra gaps= 1 total=70010 # 1u55A.351.132 read from T0547.t04.many.frag # found chain 1u55A in training set Warning: unaligning (T0547)L351 (1u55A)S133 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1u55A)K136 because L (left) conformation "forbidden" or filtered. T0547 352 :KK 1u55A 134 :KR T0547 355 :NPKLI 1u55A 137 :MYDYF Number of specific fragments extracted= 2 number of extra gaps= 2 total=70012 # 1nmoA.352.171 read from T0547.t04.many.frag # found chain 1nmoA in template set Warning: unaligning (T0547)K352 (1nmoA)T172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1nmoA)G173 because S (epsilon) conformation "forbidden" or filtered. T0547 354 :QNPKLID 1nmoA 174 :GGQSFID Number of specific fragments extracted= 1 number of extra gaps= 1 total=70013 # 2aj6A.352.16 read from T0547.t04.many.frag # found chain 2aj6A in training set T0547 352 :KKQNPKLID 2aj6A 5 :NKDEHNYIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70014 # 1knwA.352.298 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 352 :KKQNPKLID 1knwA 299 :DAGFNDLMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70015 # 1g61A.352.120 read from T0547.t04.many.frag # found chain 1g61A in training set T0547 352 :KKQNPKLID 1g61A 2121 :SPELKDFKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70016 # 2f8aA.352.128 read from T0547.t04.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)K352 (2f8aA)G117 because S (epsilon) conformation "forbidden" or filtered. T0547 353 :KQNPKLID 2f8aA 118 :AGAHPLFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=70017 # 1tuoA.352.289 read from T0547.t04.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)K352 (1tuoA)N290 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K357 (1tuoA)W295 because G (3-10) conformation "forbidden" or filtered. T0547 353 :KQNP 1tuoA 291 :FAVT T0547 358 :LID 1tuoA 296 :LLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=70019 # 1f74A.352.165 read from T0547.t04.many.frag # found chain 1f74A in training set Warning: unaligning (T0547)K352 (1f74A)T166 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1f74A)A167 because P (beta_P) conformation "forbidden" or filtered. T0547 354 :QNPKLID 1f74A 168 :GDFYLLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=70020 # 1e9rA.352.247 read from T0547.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)N355 (1e9rA)M321 because G (3-10) conformation "forbidden" or filtered. T0547 352 :KKQ 1e9rA 318 :RED T0547 356 :PKLID 1e9rA 322 :GPALR Number of specific fragments extracted= 2 number of extra gaps= 1 total=70022 # 1vioA.352.180 read from T0547.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0547)K357 (1vioA)H184 because L (left) conformation "forbidden" or filtered. T0547 352 :KKQNP 1vioA 179 :SEGRY T0547 358 :LID 1vioA 185 :QVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=70024 # 1ysjA.352.320 read from T0547.t04.many.frag # found chain 1ysjA in template set T0547 352 :KKQNPKLID 1ysjA 297 :DGTFLNAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70025 # 1gxuA.352.50 read from T0547.t04.many.frag # found chain 1gxuA in training set T0547 352 :KKQNP 1gxuA 51 :REDPE T0547 358 :LID 1gxuA 57 :FLV Number of specific fragments extracted= 2 number of extra gaps= 0 total=70027 # 1h70A.352.215 read from T0547.t04.many.frag # found chain 1h70A in training set T0547 352 :KKQNPKLID 1h70A 215 :PAGYPRTRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70028 # 2fb5A.352.160 read from T0547.t04.many.frag # found chain 2fb5A in template set T0547 352 :KKQNPKLID 2fb5A 161 :DPELGTRHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70029 # 1ru3A.352.394 read from T0547.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)P356 (1ru3A)Q399 because E (beta_S) conformation "forbidden" or filtered. T0547 352 :KKQN 1ru3A 395 :GRKM T0547 357 :KLID 1ru3A 400 :EDFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70031 # 1mpgA.352.63 read from T0547.t04.many.frag # found chain 1mpgA in training set T0547 352 :KKQNPKLID 1mpgA 64 :SAGLEPVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70032 # 1xy7A.352.32 read from T0547.t04.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)K352 (1xy7A)E33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1xy7A)Q35 because T (delta_L) conformation "forbidden" or filtered. T0547 353 :K 1xy7A 34 :A T0547 355 :NPKLID 1xy7A 36 :KVGDAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=70034 # 1vmbA.352.85 read from T0547.t04.many.frag # found chain 1vmbA in training set Warning: unaligning (T0547)Q354 (1vmbA)Q76 because G (3-10) conformation "forbidden" or filtered. T0547 352 :KK 1vmbA 74 :DG T0547 355 :NPKLID 1vmbA 77 :NLQELE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70036 # 3proC.352.132 read from T0547.t04.many.frag # found chain 3proC in training set T0547 352 :KKQNPKLID 3proC 133 :DDGATDAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70037 # 1l5aA.352.215 read from T0547.t04.many.frag # found chain 1l5aA in template set T0547 352 :KKQNPKLID 1l5aA 216 :NSQLNHLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70038 # 2f5tX.352.30 read from T0547.t04.many.frag # found chain 2f5tX in training set T0547 352 :KKQNPKLID 2f5tX 140 :PSEFFETIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70039 # 1d5tA.352.229 read from T0547.t04.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)K353 (1d5tA)Y229 because T (delta_L) conformation "forbidden" or filtered. T0547 352 :K 1d5tA 228 :L T0547 354 :QNPKLID 1d5tA 230 :GLGELPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=70041 # 2fnuA.352.290 read from T0547.t04.many.frag # found chain 2fnuA in training set T0547 352 :KKQNPKLID 2fnuA 291 :HQKFFTCKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70042 # 1uylA.352.190 read from T0547.t04.many.frag # found chain 1uylA in training set T0547 352 :KKQNPKLID 1uylA 191 :KEDQTEYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70043 # 1rloA.352.114 read from T0547.t04.many.frag # found chain 1rloA in template set T0547 352 :KKQNPKLID 1rloA 115 :SENAPEAFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70044 # 1umgA.352.129 read from T0547.t04.many.frag # found chain 1umgA in training set T0547 352 :KKQNPKLID 1umgA 132 :DKTEPGAYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=70045 # 1s99A.352.156 read from T0547.t04.many.frag # found chain 1s99A in training set Warning: unaligning (T0547)K352 (1s99A)D157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1s99A)D159 because P (beta_P) conformation "forbidden" or filtered. T0547 353 :K 1s99A 158 :G T0547 355 :NPKLID 1s99A 160 :AHDVFS Number of specific fragments extracted= 2 number of extra gaps= 2 total=70047 # 1oltA.352.425 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 352 :KKQNPKLID 1oltA 426 :TAKGRLLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70048 # 1gesA.352.408 read from T0547.t04.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)K352 (1gesA)G409 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1gesA)G411 because T (delta_L) conformation "forbidden" or filtered. T0547 353 :K 1gesA 410 :F T0547 355 :NPKLID 1gesA 412 :MDEMLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=70050 # 1jqlB.352.89 read from T0547.t04.many.frag # found chain 1jqlB in template set Warning: unaligning (T0547)K352 (1jqlB)N90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1jqlB)N94 because G (3-10) conformation "forbidden" or filtered. T0547 353 :KQN 1jqlB 91 :AAI T0547 357 :KLID 1jqlB 95 :EQLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=70052 # 1u55A.352.133 read from T0547.t04.many.frag # found chain 1u55A in training set Warning: unaligning (T0547)Q354 (1u55A)K136 because L (left) conformation "forbidden" or filtered. T0547 352 :KK 1u55A 134 :KR T0547 355 :NPKLID 1u55A 137 :MYDYFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=70054 # 1knwA.353.299 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 353 :KQNPKLIDE 1knwA 300 :AGFNDLMRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70055 # 1nmoA.353.172 read from T0547.t04.many.frag # found chain 1nmoA in template set Warning: unaligning (T0547)K353 (1nmoA)G173 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K357 (1nmoA)S177 because G (3-10) conformation "forbidden" or filtered. T0547 354 :QNP 1nmoA 174 :GGQ T0547 358 :LIDE 1nmoA 178 :FIDS Number of specific fragments extracted= 2 number of extra gaps= 2 total=70057 # 1f74A.353.166 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 353 :KQNPKLIDE 1f74A 167 :AGDFYLLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=70058 # 1g61A.353.121 read from T0547.t04.many.frag # found chain 1g61A in training set T0547 353 :KQNPKLIDE 1g61A 2122 :PELKDFKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70059 # 2aj6A.353.17 read from T0547.t04.many.frag # found chain 2aj6A in training set T0547 353 :KQNPKLIDE 2aj6A 6 :KDEHNYIKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70060 # 1vioA.353.181 read from T0547.t04.many.frag # found chain 1vioA in training set T0547 353 :KQNPKLIDE 1vioA 180 :EGRYHQVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70061 # 1tuoA.353.290 read from T0547.t04.many.frag # found chain 1tuoA in training set T0547 353 :KQNPKLIDE 1tuoA 291 :FAVTWLLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70062 # 2f8aA.353.129 read from T0547.t04.many.frag # found chain 2f8aA in training set T0547 353 :KQNPKLIDE 2f8aA 118 :AGAHPLFAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70063 # 1e9rA.353.248 read from T0547.t04.many.frag # found chain 1e9rA in template set T0547 353 :KQNPKLIDE 1e9rA 319 :EDMGPALRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70064 # 1ru3A.353.395 read from T0547.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)P356 (1ru3A)Q399 because E (beta_S) conformation "forbidden" or filtered. T0547 353 :KQN 1ru3A 396 :RKM T0547 357 :KLIDE 1ru3A 400 :EDFEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=70066 # 2fb5A.353.161 read from T0547.t04.many.frag # found chain 2fb5A in template set T0547 353 :KQNPKLIDE 2fb5A 162 :PELGTRHRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70067 # 1oltA.353.426 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 353 :KQNPKLIDE 1oltA 427 :AKGRLLIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=70068 1p2xA expands to /projects/compbio/data/pdb/1p2x.pdb.gz 1p2xA:# 1p2xA.353.66 read from T0547.t04.many.frag # adding 1p2xA to template set # found chain 1p2xA in template set T0547 353 :KQNPKLIDE 1p2xA 98 :FRHSDNINK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70069 # 1gxuA.353.51 read from T0547.t04.many.frag # found chain 1gxuA in training set T0547 353 :KQNP 1gxuA 52 :EDPE T0547 358 :LIDE 1gxuA 57 :FLVQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=70071 # 1umgA.353.130 read from T0547.t04.many.frag # found chain 1umgA in training set Warning: unaligning (T0547)K353 (1umgA)K133 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1umgA)T134 because Y (epsilon') conformation "forbidden" or filtered. T0547 355 :NPKLIDE 1umgA 135 :EPGAYNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=70072 # 1ysjA.353.321 read from T0547.t04.many.frag # found chain 1ysjA in template set T0547 353 :KQNPKLIDE 1ysjA 298 :GTFLNAASE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70073 # 2f5tX.353.31 read from T0547.t04.many.frag # found chain 2f5tX in training set T0547 353 :KQNPKLIDE 2f5tX 141 :SEFFETIRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70074 # 1h70A.353.216 read from T0547.t04.many.frag # found chain 1h70A in training set T0547 353 :KQNPKLIDE 1h70A 216 :AGYPRTREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70075 # 1uylA.353.191 read from T0547.t04.many.frag # found chain 1uylA in training set T0547 353 :KQNPKLIDE 1uylA 192 :EDQTEYLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70076 # 1l5aA.353.216 read from T0547.t04.many.frag # found chain 1l5aA in template set T0547 353 :KQNPKLIDE 1l5aA 217 :SQLNHLLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70077 # 1mpgA.353.64 read from T0547.t04.many.frag # found chain 1mpgA in training set T0547 353 :KQNPKLIDE 1mpgA 65 :AGLEPVAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70078 # 1d5tA.353.230 read from T0547.t04.many.frag # found chain 1d5tA in training set T0547 353 :KQNPKLIDE 1d5tA 229 :YGLGELPQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=70079 # 1rloA.353.115 read from T0547.t04.many.frag # found chain 1rloA in template set T0547 353 :KQNPKLIDE 1rloA 116 :ENAPEAFVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70080 # 2fnuA.353.291 read from T0547.t04.many.frag # found chain 2fnuA in training set T0547 353 :KQNPKLIDE 2fnuA 292 :QKFFTCKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70081 # 1lycA.353.92 read from T0547.t04.many.frag # found chain 1lycA in template set Warning: unaligning (T0547)Q354 (1lycA)G94 because L (left) conformation "forbidden" or filtered. T0547 353 :K 1lycA 93 :G T0547 355 :NPKLIDE 1lycA 95 :LTDTVEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=70083 # 1lugA.353.148 read from T0547.t04.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)K353 (1lugA)G150 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1lugA)S151 because P (beta_P) conformation "forbidden" or filtered. T0547 355 :NPKLIDE 1lugA 152 :AKPGLQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=70084 # 1vmbA.353.86 read from T0547.t04.many.frag # found chain 1vmbA in training set Warning: unaligning (T0547)K353 (1vmbA)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 354 :QNPKLIDE 1vmbA 76 :QNLQELEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=70085 # 1gesA.353.409 read from T0547.t04.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)K353 (1gesA)F410 because P (beta_P) conformation "forbidden" or filtered. T0547 354 :QNPKLIDE 1gesA 411 :GMDEMLQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=70086 # 1jqlB.353.90 read from T0547.t04.many.frag # found chain 1jqlB in template set Warning: unaligning (T0547)P356 (1jqlB)N94 because G (3-10) conformation "forbidden" or filtered. T0547 353 :KQN 1jqlB 91 :AAI T0547 357 :KLIDE 1jqlB 95 :EQLLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=70088 # 1v4vA.353.207 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 353 :KQNPKLIDE 1v4vA 208 :RENWPLLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70089 # 1f74A.354.167 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 354 :QNPKLIDEL 1f74A 168 :GDFYLLERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70090 # 1nmoA.354.173 read from T0547.t04.many.frag # found chain 1nmoA in template set T0547 354 :QNPKLIDEL 1nmoA 174 :GGQSFIDSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70091 # 1g61A.354.122 read from T0547.t04.many.frag # found chain 1g61A in training set T0547 354 :QNPKLIDEL 1g61A 2123 :ELKDFKKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70092 # 1knwA.354.300 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q354 (1knwA)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 355 :NPKLIDEL 1knwA 302 :FNDLMRPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=70093 # 2aj6A.354.18 read from T0547.t04.many.frag # found chain 2aj6A in training set T0547 354 :QNPKLIDEL 2aj6A 7 :DEHNYIKQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70094 # 2f8aA.354.130 read from T0547.t04.many.frag # found chain 2f8aA in training set T0547 354 :QNPKLIDEL 2f8aA 119 :GAHPLFAFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70095 # 1tuoA.354.291 read from T0547.t04.many.frag # found chain 1tuoA in training set T0547 354 :QNPKLIDEL 1tuoA 292 :AVTWLLDRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70096 # 1p2xA.354.67 read from T0547.t04.many.frag # found chain 1p2xA in template set T0547 354 :QNPKLIDEL 1p2xA 99 :RHSDNINKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70097 # 1vioA.354.182 read from T0547.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0547)Q354 (1vioA)G181 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1vioA)R182 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K357 (1vioA)H184 because L (left) conformation "forbidden" or filtered. T0547 356 :P 1vioA 183 :Y T0547 358 :LIDEL 1vioA 185 :QVKRM Number of specific fragments extracted= 2 number of extra gaps= 2 total=70099 # 1e9rA.354.249 read from T0547.t04.many.frag # found chain 1e9rA in template set T0547 354 :QNPKLIDEL 1e9rA 320 :DMGPALRPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70100 # 1gesA.354.410 read from T0547.t04.many.frag # found chain 1gesA in template set T0547 354 :QNPKLIDEL 1gesA 411 :GMDEMLQGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70101 # 1ru3A.354.396 read from T0547.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)P356 (1ru3A)Q399 because E (beta_S) conformation "forbidden" or filtered. T0547 354 :QN 1ru3A 397 :KM T0547 357 :KLIDEL 1ru3A 400 :EDFEPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=70103 # 1ukfA.354.158 read from T0547.t04.many.frag # found chain 1ukfA in training set T0547 354 :QNPKLIDEL 1ukfA 239 :AAPQLIKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70104 # 2f5tX.354.32 read from T0547.t04.many.frag # found chain 2f5tX in training set Warning: unaligning (T0547)L362 because of BadResidue code BAD_PEPTIDE in next template residue (2f5tX)L151 T0547 354 :QNPKLIDE 2f5tX 142 :EFFETIRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=70105 # 1lycA.354.93 read from T0547.t04.many.frag # found chain 1lycA in template set T0547 354 :QNPKLIDEL 1lycA 94 :GLTDTVEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70106 # 1oltA.354.427 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 354 :QNPKLIDEL 1oltA 428 :KGRLLIRNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70107 # 1ysjA.354.322 read from T0547.t04.many.frag # found chain 1ysjA in template set T0547 354 :QNPKLIDEL 1ysjA 299 :TFLNAASEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70108 # 1l5aA.354.217 read from T0547.t04.many.frag # found chain 1l5aA in template set T0547 354 :QNPKLIDEL 1l5aA 218 :QLNHLLLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70109 # 1v4vA.354.208 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 354 :QNPKLIDEL 1v4vA 209 :ENWPLLSDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70110 # 1lugA.354.149 read from T0547.t04.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)N355 (1lugA)A152 because P (beta_P) conformation "forbidden" or filtered. T0547 354 :Q 1lugA 151 :S T0547 356 :PKLIDEL 1lugA 153 :KPGLQKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=70112 # 2aqlA.354.82 read from T0547.t04.many.frag # found chain 2aqlA in template set T0547 354 :QNPKLIDEL 2aqlA 233 :LLYKFERPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70113 # 1jqlB.354.91 read from T0547.t04.many.frag # found chain 1jqlB in template set Warning: unaligning (T0547)P356 (1jqlB)N94 because G (3-10) conformation "forbidden" or filtered. T0547 354 :QN 1jqlB 92 :AI T0547 357 :KLIDEL 1jqlB 95 :EQLLTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=70115 # 1v5vA.354.159 read from T0547.t04.many.frag # found chain 1v5vA in training set T0547 354 :QNPKLIDEL 1v5vA 160 :KARDLAKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70116 # 2fb5A.354.162 read from T0547.t04.many.frag # found chain 2fb5A in template set T0547 354 :QNPKLIDEL 2fb5A 163 :ELGTRHRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70117 # 2eng.354.157 read from T0547.t04.many.frag # found chain 2eng in training set T0547 354 :QNPKLIDEL 2eng 158 :RFPDALKPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=70118 # 1vmbA.354.87 read from T0547.t04.many.frag # found chain 1vmbA in training set T0547 354 :QNPKLIDEL 1vmbA 76 :QNLQELENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70119 # 1gxuA.354.52 read from T0547.t04.many.frag # found chain 1gxuA in training set T0547 354 :QNP 1gxuA 53 :DPE T0547 358 :LIDEL 1gxuA 57 :FLVQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=70121 # 1tfzA.354.293 read from T0547.t04.many.frag # found chain 1tfzA in training set T0547 354 :QNPKLIDEL 1tfzA 294 :DIFRTLREM Number of specific fragments extracted= 1 number of extra gaps= 0 total=70122 # 1xppA.354.29 read from T0547.t04.many.frag # found chain 1xppA in training set T0547 354 :QNPKLIDEL 1xppA 28 :YDNTLLRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70123 # 1d5tA.354.231 read from T0547.t04.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)Q354 (1d5tA)G230 because S (epsilon) conformation "forbidden" or filtered. T0547 355 :NPKLIDEL 1d5tA 231 :LGELPQGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=70124 # 1f74A.355.168 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 355 :NPKLIDELY 1f74A 169 :DFYLLERLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70125 # 1nmoA.355.174 read from T0547.t04.many.frag # found chain 1nmoA in template set T0547 355 :NPKLIDELY 1nmoA 175 :GQSFIDSAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70126 # 1g61A.355.123 read from T0547.t04.many.frag # found chain 1g61A in training set T0547 355 :NPKLIDELY 1g61A 2124 :LKDFKKDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70127 # 1p2xA.355.68 read from T0547.t04.many.frag # found chain 1p2xA in template set T0547 355 :NPKLIDELY 1p2xA 100 :HSDNINKFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70128 # 2f8aA.355.131 read from T0547.t04.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)N355 (2f8aA)A120 because P (beta_P) conformation "forbidden" or filtered. T0547 356 :PKLIDELY 2f8aA 121 :HPLFAFLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=70129 # 1knwA.355.301 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 355 :NPKLIDELY 1knwA 302 :FNDLMRPAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=70130 # 1tuoA.355.292 read from T0547.t04.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)K357 (1tuoA)W295 because G (3-10) conformation "forbidden" or filtered. T0547 355 :NP 1tuoA 293 :VT T0547 358 :LIDELY 1tuoA 296 :LLDRLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=70132 # 2aj6A.355.19 read from T0547.t04.many.frag # found chain 2aj6A in training set T0547 355 :NPKLIDELY 2aj6A 8 :EHNYIKQIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70133 # 2aqlA.355.83 read from T0547.t04.many.frag # found chain 2aqlA in template set T0547 355 :NPKLIDELY 2aqlA 234 :LYKFERPQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=70134 # 1ukfA.355.159 read from T0547.t04.many.frag # found chain 1ukfA in training set T0547 355 :NPKLIDELY 1ukfA 240 :APQLIKGLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70135 # 1oltA.355.428 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 355 :NPKLIDELY 1oltA 429 :GRLLIRNIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=70136 # 1vioA.355.183 read from T0547.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0547)K357 (1vioA)H184 because L (left) conformation "forbidden" or filtered. T0547 355 :NP 1vioA 182 :RY T0547 358 :LIDELY 1vioA 185 :QVKRMF Number of specific fragments extracted= 2 number of extra gaps= 1 total=70138 # 1xppA.355.30 read from T0547.t04.many.frag # found chain 1xppA in training set T0547 355 :NPKLIDELY 1xppA 29 :DNTLLRTLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70139 # 1vs0A.355.59 read from T0547.t04.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)P356 (1vs0A)Y510 because D (zeta) conformation "forbidden" or filtered. T0547 355 :N 1vs0A 509 :E T0547 357 :KLIDELY 1vs0A 511 :PQLRALA Number of specific fragments extracted= 2 number of extra gaps= 1 total=70141 # 1wvqA.355.27 read from T0547.t04.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)N355 (1wvqA)F28 because S (epsilon) conformation "forbidden" or filtered. T0547 356 :PKLIDELY 1wvqA 29 :IKTVEDLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=70142 # 1v4vA.355.209 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 355 :NPKLIDELY 1v4vA 210 :NWPLLSDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70143 # 1e9rA.355.250 read from T0547.t04.many.frag # found chain 1e9rA in template set T0547 355 :NPKLIDELY 1e9rA 321 :MGPALRPLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70144 # 1lycA.355.94 read from T0547.t04.many.frag # found chain 1lycA in template set T0547 355 :NPKLIDELY 1lycA 95 :LTDTVEALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70145 1unlD expands to /projects/compbio/data/pdb/1unl.pdb.gz 1unlD:# 1unlD.355.48 read from T0547.t04.many.frag # adding 1unlD to template set # found chain 1unlD in template set T0547 355 :NPKLIDELY 1unlD 148 :TSELLRCLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=70146 # 1jqlB.355.92 read from T0547.t04.many.frag # found chain 1jqlB in template set Warning: unaligning (T0547)P356 (1jqlB)N94 because G (3-10) conformation "forbidden" or filtered. T0547 355 :N 1jqlB 93 :I T0547 357 :KLIDELY 1jqlB 95 :EQLLTLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=70148 # 1v5vA.355.160 read from T0547.t04.many.frag # found chain 1v5vA in training set T0547 355 :NPKLIDELY 1v5vA 161 :ARDLAKDLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70149 # 1gxuA.355.53 read from T0547.t04.many.frag # found chain 1gxuA in training set T0547 355 :NP 1gxuA 54 :PE T0547 358 :LIDELY 1gxuA 57 :FLVQLY Number of specific fragments extracted= 2 number of extra gaps= 0 total=70151 # 1q2lA.355.589 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 355 :NPKLIDELY 1q2lA 613 :LPQLFQALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70152 # 1gesA.355.411 read from T0547.t04.many.frag # found chain 1gesA in template set T0547 355 :NPKLIDELY 1gesA 412 :MDEMLQGFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70153 # 2bbhA.355.145 read from T0547.t04.many.frag # found chain 2bbhA in template set Warning: unaligning (T0547)N355 (2bbhA)I143 because P (beta_P) conformation "forbidden" or filtered. T0547 356 :PKLIDELY 2bbhA 144 :GDVFDPVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=70154 # 1l5aA.355.218 read from T0547.t04.many.frag # found chain 1l5aA in template set T0547 355 :NPKLIDELY 1l5aA 219 :LNHLLLKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70155 # 2eng.355.158 read from T0547.t04.many.frag # found chain 2eng in training set T0547 355 :NPKLIDELY 2eng 159 :FPDALKPGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=70156 # 1lugA.355.150 read from T0547.t04.many.frag # found chain 1lugA in training set T0547 355 :NPKLIDELY 1lugA 152 :AKPGLQKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70157 # 1w8sA.355.239 read from T0547.t04.many.frag # found chain 1w8sA in template set T0547 355 :NPKLIDELY 1w8sA 240 :ALKFARALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70158 # 1ta0A.355.59 read from T0547.t04.many.frag # found chain 1ta0A in template set T0547 355 :NPKLIDELY 1ta0A 135 :VDEFLQRMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=70159 # 1f74A.356.169 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 356 :PKLIDELYD 1f74A 170 :FYLLERLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70160 # 1p2xA.356.69 read from T0547.t04.many.frag # found chain 1p2xA in template set T0547 356 :PKLIDELYD 1p2xA 101 :SDNINKFLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70161 # 2aqlA.356.84 read from T0547.t04.many.frag # found chain 2aqlA in template set T0547 356 :PKLIDELYD 2aqlA 235 :YKFERPQYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70162 # 1nmoA.356.175 read from T0547.t04.many.frag # found chain 1nmoA in template set T0547 356 :PKLIDELYD 1nmoA 176 :QSFIDSAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70163 # 1g61A.356.124 read from T0547.t04.many.frag # found chain 1g61A in training set T0547 356 :PKLIDELYD 1g61A 2125 :KDFKKDIED Number of specific fragments extracted= 1 number of extra gaps= 0 total=70164 # 1ukfA.356.160 read from T0547.t04.many.frag # found chain 1ukfA in training set T0547 356 :PKLIDELYD 1ukfA 241 :PQLIKGLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=70165 # 1jqlB.356.93 read from T0547.t04.many.frag # found chain 1jqlB in template set Warning: unaligning (T0547)P356 (1jqlB)N94 because G (3-10) conformation "forbidden" or filtered. T0547 357 :KLIDELYD 1jqlB 95 :EQLLTLTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=70166 # 2f8aA.356.132 read from T0547.t04.many.frag # found chain 2f8aA in training set T0547 356 :PKLIDELYD 2f8aA 121 :HPLFAFLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70167 # 1oltA.356.429 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 356 :PKLIDELYD 1oltA 430 :RLLIRNICM Number of specific fragments extracted= 1 number of extra gaps= 0 total=70168 # 1vs0A.356.60 read from T0547.t04.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)P356 (1vs0A)Y510 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)I359 (1vs0A)L513 because G (3-10) conformation "forbidden" or filtered. T0547 357 :KL 1vs0A 511 :PQ T0547 360 :DELYD 1vs0A 514 :RALAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=70170 # 1wb4A.356.232 read from T0547.t04.many.frag # found chain 1wb4A in training set T0547 356 :PKLIDELYD 1wb4A 1021 :YANMNPQIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70171 1xtoA expands to /projects/compbio/data/pdb/1xto.pdb.gz 1xtoA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xtoA.356.56 read from T0547.t04.many.frag # adding 1xtoA to template set # found chain 1xtoA in template set T0547 356 :PKLIDELYD 1xtoA 57 :SPDIRAQLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70172 # 1v4vA.356.210 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 356 :PKLIDELYD 1v4vA 211 :WPLLSDLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70173 # 1k47A.356.272 read from T0547.t04.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)P356 (1k47A)T271 because E (beta_S) conformation "forbidden" or filtered. T0547 357 :KLIDELYD 1k47A 272 :PLLRQLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=70174 # 1pgjA.356.150 read from T0547.t04.many.frag # found chain 1pgjA in template set T0547 356 :PKLIDELYD 1pgjA 151 :WEEIRPIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70175 # 1tuoA.356.293 read from T0547.t04.many.frag # found chain 1tuoA in training set T0547 356 :PKLIDELYD 1tuoA 294 :TWLLDRLGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70176 # 1xppA.356.31 read from T0547.t04.many.frag # found chain 1xppA in training set T0547 356 :PKLIDELYD 1xppA 30 :NTLLRTLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70177 # 1knwA.356.302 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 356 :PKLIDELYD 1knwA 303 :NDLMRPAMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=70178 # 2eng.356.159 read from T0547.t04.many.frag # found chain 2eng in training set T0547 356 :PKLIDELYD 2eng 160 :PDALKPGCY Number of specific fragments extracted= 1 number of extra gaps= 0 total=70179 # 1vmbA.356.89 read from T0547.t04.many.frag # found chain 1vmbA in training set T0547 356 :PKLIDELYD 1vmbA 78 :LQELENFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70180 # 1lugA.356.151 read from T0547.t04.many.frag # found chain 1lugA in training set T0547 356 :PKLIDELYD 1lugA 153 :KPGLQKVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70181 # 1oznA.356.239 read from T0547.t04.many.frag # found chain 1oznA in training set Warning: unaligning (T0547)P356 (1oznA)D265 because Y (epsilon') conformation "forbidden" or filtered. T0547 357 :KLIDELYD 1oznA 266 :CRARPLWA Number of specific fragments extracted= 1 number of extra gaps= 1 total=70182 # 1wvqA.356.28 read from T0547.t04.many.frag # found chain 1wvqA in training set T0547 356 :PKLIDELYD 1wvqA 29 :IKTVEDLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70183 # 1cnv.356.200 read from T0547.t04.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)P356 (1cnv)I201 because G (3-10) conformation "forbidden" or filtered. T0547 357 :KLIDELYD 1cnv 202 :QRIRNAWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=70184 # 1w8sA.356.240 read from T0547.t04.many.frag # found chain 1w8sA in template set T0547 356 :PKLIDELYD 1w8sA 241 :LKFARALAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70185 # 2aj6A.356.20 read from T0547.t04.many.frag # found chain 2aj6A in training set T0547 356 :PKLIDELYD 2aj6A 9 :HNYIKQIAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=70186 # 1c1kA.356.113 read from T0547.t04.many.frag # found chain 1c1kA in training set T0547 356 :PKLIDELYD 1c1kA 114 :EEDIRNIYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=70187 # 1nox.356.29 read from T0547.t04.many.frag # found chain 1nox in training set T0547 356 :PKLIDELYD 1nox 30 :EGLLREILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70188 # 1ysjA.356.324 read from T0547.t04.many.frag # found chain 1ysjA in template set T0547 356 :PKLIDELYD 1ysjA 301 :LNAASEAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70189 # 1tjyA.356.223 read from T0547.t04.many.frag # found chain 1tjyA in training set T0547 356 :PKLIDELYD 1tjyA 248 :PNVMRPYVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70190 # 1f74A.357.170 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 357 :KLIDELYDL 1f74A 171 :YLLERLKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70191 # 1p2xA.357.70 read from T0547.t04.many.frag # found chain 1p2xA in template set T0547 357 :KLIDELYDL 1p2xA 102 :DNINKFLDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70192 # 2aqlA.357.85 read from T0547.t04.many.frag # found chain 2aqlA in template set T0547 357 :KLIDELYDL 2aqlA 236 :KFERPQYAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70193 # 1g61A.357.125 read from T0547.t04.many.frag # found chain 1g61A in training set T0547 357 :KLIDELYDL 1g61A 2126 :DFKKDIEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70194 # 1sjwA.357.5 read from T0547.t04.many.frag # found chain 1sjwA in training set T0547 357 :KLIDELYDL 1sjwA 6 :EIVRRMVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70195 # 1ukfA.357.161 read from T0547.t04.many.frag # found chain 1ukfA in training set T0547 357 :KLIDELYDL 1ukfA 242 :QLIKGLIDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=70196 # 1xtoA.357.57 read from T0547.t04.many.frag # found chain 1xtoA in template set T0547 357 :KLIDELYDL 1xtoA 58 :PDIRAQLQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70197 # 1jqlB.357.94 read from T0547.t04.many.frag # found chain 1jqlB in template set T0547 357 :KLIDELYDL 1jqlB 95 :EQLLTLTGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70198 # 1k47A.357.273 read from T0547.t04.many.frag # found chain 1k47A in template set T0547 357 :KLIDELYDL 1k47A 272 :PLLRQLKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70199 # 1wvqA.357.29 read from T0547.t04.many.frag # found chain 1wvqA in training set T0547 357 :KLIDELYDL 1wvqA 30 :KTVEDLYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70200 # 1rp4A.357.262 read from T0547.t04.many.frag # found chain 1rp4A in template set T0547 357 :KLIDELYDL 1rp4A 301 :EIKNKMDNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70201 # 3thiA.357.121 read from T0547.t04.many.frag # found chain 3thiA in template set Warning: unaligning (T0547)L358 (3thiA)N131 because Y (epsilon') conformation "forbidden" or filtered. T0547 357 :K 3thiA 130 :D T0547 359 :IDELYDL 3thiA 132 :IYELYKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=70203 # 1xppA.357.32 read from T0547.t04.many.frag # found chain 1xppA in training set T0547 357 :KLIDELYDL 1xppA 31 :TLLRTLVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70204 # 1oznA.357.240 read from T0547.t04.many.frag # found chain 1oznA in training set Warning: unaligning (T0547)I359 (1oznA)A268 because G (3-10) conformation "forbidden" or filtered. T0547 357 :KL 1oznA 266 :CR T0547 360 :DELYDL 1oznA 269 :RPLWAW Number of specific fragments extracted= 2 number of extra gaps= 1 total=70206 # 1wb4A.357.233 read from T0547.t04.many.frag # found chain 1wb4A in training set T0547 357 :KLIDELYDL 1wb4A 1022 :ANMNPQIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70207 # 1nox.357.30 read from T0547.t04.many.frag # found chain 1nox in training set T0547 357 :KLIDELYDL 1nox 31 :GLLREILEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70208 # 1vs0A.357.61 read from T0547.t04.many.frag # found chain 1vs0A in template set T0547 357 :KLIDELYDL 1vs0A 511 :PQLRALAED Number of specific fragments extracted= 1 number of extra gaps= 0 total=70209 # 1c1kA.357.114 read from T0547.t04.many.frag # found chain 1c1kA in training set T0547 357 :KLIDELYDL 1c1kA 115 :EDIRNIYYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70210 # 1oltA.357.430 read from T0547.t04.many.frag # found chain 1oltA in template set T0547 357 :KLIDELYDL 1oltA 431 :LLIRNICMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=70211 # 1whsA.357.207 read from T0547.t04.many.frag # found chain 1whsA in template set T0547 357 :KLIDELYDL 1whsA 201 :DTYRRLKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70212 # 1w8sA.357.241 read from T0547.t04.many.frag # found chain 1w8sA in template set T0547 357 :KLIDELYDL 1w8sA 242 :KFARALAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70213 # 2f8aA.357.133 read from T0547.t04.many.frag # found chain 2f8aA in training set T0547 357 :KLIDELYDL 2f8aA 122 :PLFAFLREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70214 # 1owlA.357.146 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 357 :KLIDELYDL 1owlA 147 :SVYGPFWKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=70215 # 1rz2A.357.68 read from T0547.t04.many.frag # found chain 1rz2A in training set T0547 357 :KLIDELYDL 1rz2A 69 :KQFKALQQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70216 # 1vp4A.357.275 read from T0547.t04.many.frag # found chain 1vp4A in template set T0547 357 :KLIDELYDL 1vp4A 264 :EFIRKIVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70217 # 2bbhA.357.147 read from T0547.t04.many.frag # found chain 2bbhA in template set Warning: unaligning (T0547)K357 (2bbhA)D145 because Y (epsilon') conformation "forbidden" or filtered. T0547 358 :LIDELYDL 2bbhA 146 :VFDPVRER Number of specific fragments extracted= 1 number of extra gaps= 1 total=70218 # 1knyA.357.113 read from T0547.t04.many.frag # found chain 1knyA in template set Warning: unaligning (T0547)K357 (1knyA)G114 because L (left) conformation "forbidden" or filtered. T0547 358 :LIDELYDL 1knyA 115 :YLEKVYQT Number of specific fragments extracted= 1 number of extra gaps= 1 total=70219 # 1vr8A.357.72 read from T0547.t04.many.frag # found chain 1vr8A in training set Warning: unaligning (T0547)L365 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vr8A)V97 T0547 357 :KLIDELYD 1vr8A 85 :KIWKKLNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=70220 # 1a8d.357.235 read from T0547.t04.many.frag # found chain 1a8d in training set T0547 357 :KLIDELYDL 1a8d 236 :KEIEKLYTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70221 # 1gxuA.357.55 read from T0547.t04.many.frag # found chain 1gxuA in training set T0547 358 :LIDELYDL 1gxuA 57 :FLVQLYQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=70222 # 1f74A.358.171 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 358 :LIDELYDLY 1f74A 172 :LLERLKKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=70223 # 1p2xA.358.71 read from T0547.t04.many.frag # found chain 1p2xA in template set T0547 358 :LIDELYDLY 1p2xA 103 :NINKFLDFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70224 # 2aqlA.358.86 read from T0547.t04.many.frag # found chain 2aqlA in template set T0547 358 :LIDELYDLY 2aqlA 237 :FERPQYAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70225 # 1sjwA.358.6 read from T0547.t04.many.frag # found chain 1sjwA in training set T0547 358 :LIDELYDLY 1sjwA 7 :IVRRMVSAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70226 # 1xtoA.358.58 read from T0547.t04.many.frag # found chain 1xtoA in template set T0547 358 :LIDELYDLY 1xtoA 59 :DIRAQLQAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70227 # 3thiA.358.122 read from T0547.t04.many.frag # found chain 3thiA in template set Warning: unaligning (T0547)L358 (3thiA)N131 because Y (epsilon') conformation "forbidden" or filtered. T0547 359 :IDELYDLY 3thiA 132 :IYELYKKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=70228 # 1wvqA.358.30 read from T0547.t04.many.frag # found chain 1wvqA in training set T0547 358 :LIDELYDLY 1wvqA 31 :TVEDLYEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70229 # 1jqlB.358.95 read from T0547.t04.many.frag # found chain 1jqlB in template set T0547 358 :LIDELYDLY 1jqlB 96 :QLLTLTGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70230 # 1k47A.358.274 read from T0547.t04.many.frag # found chain 1k47A in template set T0547 358 :LIDELYDLY 1k47A 273 :LLRQLKEAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70231 # 1nox.358.31 read from T0547.t04.many.frag # found chain 1nox in training set T0547 358 :LIDELYDLY 1nox 32 :LLREILEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70232 # 1c1kA.358.115 read from T0547.t04.many.frag # found chain 1c1kA in training set T0547 358 :LIDELYDLY 1c1kA 116 :DIRNIYYFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70233 # 1whsA.358.208 read from T0547.t04.many.frag # found chain 1whsA in template set T0547 358 :LIDELYDLY 1whsA 202 :TYRRLKEAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=70234 # 1wb4A.358.234 read from T0547.t04.many.frag # found chain 1wb4A in training set T0547 358 :LIDELYDLY 1wb4A 1023 :NMNPQIEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=70235 1scfA expands to /projects/compbio/data/pdb/1scf.pdb.gz 1scfA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1scfA.358.142 read from T0547.t04.many.frag # adding 1scfA to template set # found chain 1scfA in template set T0547 358 :LIDELYDLY 1scfA 118 :IFNRSIDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70236 # 1oznA.358.241 read from T0547.t04.many.frag # found chain 1oznA in training set T0547 358 :LIDELYDLY 1oznA 267 :RARPLWAWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70237 # 1owlA.358.147 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 358 :LIDELYDLY 1owlA 148 :VYGPFWKNW Number of specific fragments extracted= 1 number of extra gaps= 0 total=70238 # 1rp4A.358.263 read from T0547.t04.many.frag # found chain 1rp4A in template set T0547 358 :LIDELYDLY 1rp4A 302 :IKNKMDNVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70239 # 1ukfA.358.162 read from T0547.t04.many.frag # found chain 1ukfA in training set T0547 358 :LIDELYDLY 1ukfA 243 :LIKGLIDHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=70240 # 1a8d.358.236 read from T0547.t04.many.frag # found chain 1a8d in training set T0547 358 :LIDELYDLY 1a8d 237 :EIEKLYTSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=70241 # 1xppA.358.33 read from T0547.t04.many.frag # found chain 1xppA in training set T0547 358 :LIDELYDLY 1xppA 32 :LLRTLVEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70242 # 1rz2A.358.69 read from T0547.t04.many.frag # found chain 1rz2A in training set T0547 358 :LIDELYDLY 1rz2A 70 :QFKALQQIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=70243 # 1knyA.358.114 read from T0547.t04.many.frag # found chain 1knyA in template set T0547 358 :LIDELYDLY 1knyA 115 :YLEKVYQTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70244 # 1vs0A.358.62 read from T0547.t04.many.frag # found chain 1vs0A in template set T0547 358 :LIDELYDLY 1vs0A 512 :QLRALAEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70245 # 2b6cA.358.123 read from T0547.t04.many.frag # found chain 2b6cA in template set T0547 358 :LIDELYDLY 2b6cA 121 :ELPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70246 # 1q2lA.358.592 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 358 :LIDELYDLY 1q2lA 616 :LFQALLEGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=70247 # 1w9zA.358.206 read from T0547.t04.many.frag # found chain 1w9zA in template set T0547 358 :LIDELYDLY 1w9zA 207 :SLTAMTNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70248 # 1w8sA.358.242 read from T0547.t04.many.frag # found chain 1w8sA in template set T0547 358 :LIDELYDLY 1w8sA 243 :FARALAELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70249 # 2fokA.358.389 read from T0547.t04.many.frag # found chain 2fokA in template set T0547 358 :LIDELYDLY 2fokA 390 :LEEKKSELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70250 # 1pprM.358.102 read from T0547.t04.many.frag # found chain 1pprM in template set T0547 358 :LIDELYDLY 1pprM 103 :MVMDVYDSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70251 # 1xkrA.358.83 read from T0547.t04.many.frag # found chain 1xkrA in training set T0547 358 :LIDELYDLY 1xkrA 83 :VVKKILEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70252 # 1f74A.359.172 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 359 :IDELYDLYK 1f74A 173 :LERLKKAYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70253 # 1p2xA.359.72 read from T0547.t04.many.frag # found chain 1p2xA in template set T0547 359 :IDELYDLYK 1p2xA 104 :INKFLDFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=70254 # 1sjwA.359.7 read from T0547.t04.many.frag # found chain 1sjwA in training set T0547 359 :IDELYDLYK 1sjwA 8 :VRRMVSAFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=70255 # 1rp4A.359.264 read from T0547.t04.many.frag # found chain 1rp4A in template set T0547 359 :IDELYDLYK 1rp4A 303 :KNKMDNVIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70256 # 1xtoA.359.59 read from T0547.t04.many.frag # found chain 1xtoA in template set T0547 359 :IDELYDLYK 1xtoA 60 :IRAQLQAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70257 # 3thiA.359.123 read from T0547.t04.many.frag # found chain 3thiA in template set T0547 359 :IDELYDLYK 3thiA 132 :IYELYKKIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=70258 # 1jqlB.359.96 read from T0547.t04.many.frag # found chain 1jqlB in template set Warning: unaligning (T0547)K367 (1jqlB)H105 because Y (epsilon') conformation "forbidden" or filtered. T0547 359 :IDELYDLY 1jqlB 97 :LLTLTGLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=70259 # 1whsA.359.209 read from T0547.t04.many.frag # found chain 1whsA in template set T0547 359 :IDELYDLYK 1whsA 203 :YRRLKEACL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70260 # 1owlA.359.148 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 359 :IDELYDLYK 1owlA 149 :YGPFWKNWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70261 # 1scfA.359.143 read from T0547.t04.many.frag # found chain 1scfA in template set T0547 359 :IDELYDLYK 1scfA 119 :FNRSIDAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70262 # 1wvqA.359.31 read from T0547.t04.many.frag # found chain 1wvqA in training set T0547 359 :IDELYDLYK 1wvqA 32 :VEDLYEALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70263 # 1w9zA.359.207 read from T0547.t04.many.frag # found chain 1w9zA in template set T0547 359 :IDELYDLYK 1w9zA 208 :LTAMTNLVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=70264 # 2fokA.359.390 read from T0547.t04.many.frag # found chain 2fokA in template set T0547 359 :IDELYDLYK 2fokA 391 :EEKKSELRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=70265 # 1k47A.359.275 read from T0547.t04.many.frag # found chain 1k47A in template set T0547 359 :IDELYDLYK 1k47A 274 :LRQLKEASQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70266 # 1knyA.359.115 read from T0547.t04.many.frag # found chain 1knyA in template set T0547 359 :IDELYDLYK 1knyA 116 :LEKVYQTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70267 # 1no7A.359.381 read from T0547.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)K367 (1no7A)Q840 because N (gamma') conformation "forbidden" or filtered. T0547 359 :IDELYDLY 1no7A 832 :FDRVYATL Number of specific fragments extracted= 1 number of extra gaps= 1 total=70268 # 1oznA.359.242 read from T0547.t04.many.frag # found chain 1oznA in training set T0547 359 :IDELYDLYK 1oznA 268 :ARPLWAWLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70269 # 1wb4A.359.235 read from T0547.t04.many.frag # found chain 1wb4A in training set T0547 359 :IDELYDLYK 1wb4A 1024 :MNPQIEAMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70270 # 1nox.359.32 read from T0547.t04.many.frag # found chain 1nox in training set T0547 359 :IDELYDLYK 1nox 33 :LREILEAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70271 # 2aqlA.359.87 read from T0547.t04.many.frag # found chain 2aqlA in template set Warning: unaligning (T0547)I359 (2aqlA)E238 because G (3-10) conformation "forbidden" or filtered. T0547 360 :DELYDLYK 2aqlA 239 :RPQYAEIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=70272 # 1c1kA.359.116 read from T0547.t04.many.frag # found chain 1c1kA in training set T0547 359 :IDELYDLYK 1c1kA 117 :IRNIYYFSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70273 # 1a8d.359.237 read from T0547.t04.many.frag # found chain 1a8d in training set T0547 359 :IDELYDLYK 1a8d 238 :IEKLYTSYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70274 # 1ecrA.359.66 read from T0547.t04.many.frag # found chain 1ecrA in template set T0547 359 :IDELYDLYK 1ecrA 67 :QSLALRHFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70275 # 1pprM.359.103 read from T0547.t04.many.frag # found chain 1pprM in template set T0547 359 :IDELYDLYK 1pprM 104 :VMDVYDSVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70276 # 1xkrA.359.84 read from T0547.t04.many.frag # found chain 1xkrA in training set T0547 359 :IDELYDLYK 1xkrA 84 :VKKILEILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=70277 # 1iuqA.359.253 read from T0547.t04.many.frag # found chain 1iuqA in training set T0547 359 :IDELYDLYK 1iuqA 255 :VDNMRRLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70278 # 1w8sA.359.243 read from T0547.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)K367 because last residue in template chain is (1w8sA)Y252 T0547 359 :IDELYDLY 1w8sA 244 :ARALAELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70279 # 1wrvA.359.279 read from T0547.t04.many.frag # found chain 1wrvA in training set T0547 359 :IDELYDLYK 1wrvA 280 :ALRLREVYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70280 # 2b6cA.359.124 read from T0547.t04.many.frag # found chain 2b6cA in template set T0547 359 :IDELYDLYK 2b6cA 122 :LPTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=70281 # 1o9iA.359.188 read from T0547.t04.many.frag # found chain 1o9iA in training set Warning: unaligning (T0547)K367 (1o9iA)G197 because S (epsilon) conformation "forbidden" or filtered. T0547 359 :IDELYDLY 1o9iA 189 :QEELEEKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=70282 # 1f74A.360.173 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 360 :DELYDLYKS 1f74A 174 :ERLKKAYPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=70283 # 1scfA.360.144 read from T0547.t04.many.frag # found chain 1scfA in template set T0547 360 :DELYDLYKS 1scfA 120 :NRSIDAFKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70284 # 1p2xA.360.73 read from T0547.t04.many.frag # found chain 1p2xA in template set T0547 360 :DELYDLYKS 1p2xA 105 :NKFLDFIHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=70285 # 2fokA.360.391 read from T0547.t04.many.frag # found chain 2fokA in template set T0547 360 :DELYDLYKS 2fokA 392 :EKKSELRHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70286 # 1sjwA.360.8 read from T0547.t04.many.frag # found chain 1sjwA in training set T0547 360 :DELYDLYKS 1sjwA 9 :RRMVSAFNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=70287 # 1xtoA.360.60 read from T0547.t04.many.frag # found chain 1xtoA in template set T0547 360 :DELYDLYKS 1xtoA 61 :RAQLQAFAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70288 # 1jqlB.360.97 read from T0547.t04.many.frag # found chain 1jqlB in template set Warning: unaligning (T0547)K367 (1jqlB)H105 because Y (epsilon') conformation "forbidden" or filtered. T0547 360 :DELYDLY 1jqlB 98 :LTLTGLL T0547 368 :S 1jqlB 106 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=70290 # 3thiA.360.124 read from T0547.t04.many.frag # found chain 3thiA in template set Warning: unaligning (T0547)K367 (3thiA)G140 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S368 (3thiA)T141 because P (beta_P) conformation "forbidden" or filtered. T0547 360 :DELYDLY 3thiA 133 :YELYKKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=70291 # 1whsA.360.210 read from T0547.t04.many.frag # found chain 1whsA in template set T0547 360 :DELYDLYKS 1whsA 204 :RRLKEACLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=70292 # 1wvqA.360.32 read from T0547.t04.many.frag # found chain 1wvqA in training set T0547 360 :DELYDLYKS 1wvqA 33 :EDLYEALVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=70293 # 1owlA.360.149 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 360 :DELYDLYKS 1owlA 150 :GPFWKNWQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70294 # 1no7A.360.382 read from T0547.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)K367 (1no7A)Q840 because N (gamma') conformation "forbidden" or filtered. T0547 360 :DELYDLY 1no7A 833 :DRVYATL T0547 368 :S 1no7A 841 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=70296 # 1rp4A.360.265 read from T0547.t04.many.frag # found chain 1rp4A in template set T0547 360 :DELYDLYKS 1rp4A 304 :NKMDNVISQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70297 # 1w9zA.360.208 read from T0547.t04.many.frag # found chain 1w9zA in template set T0547 360 :DELYDLYKS 1w9zA 209 :TAMTNLVNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70298 # 1k47A.360.276 read from T0547.t04.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)S368 (1k47A)D283 because L (left) conformation "forbidden" or filtered. T0547 360 :DELYDLYK 1k47A 275 :RQLKEASQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=70299 # 1knyA.360.116 read from T0547.t04.many.frag # found chain 1knyA in template set T0547 360 :DELYDLYKS 1knyA 117 :EKVYQTAKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70300 # 1a8d.360.238 read from T0547.t04.many.frag # found chain 1a8d in training set T0547 360 :DELYDLYKS 1a8d 239 :EKLYTSYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70301 # 1ecrA.360.67 read from T0547.t04.many.frag # found chain 1ecrA in template set T0547 360 :DELYDLYKS 1ecrA 68 :SLALRHFRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=70302 # 1pprM.360.104 read from T0547.t04.many.frag # found chain 1pprM in template set T0547 360 :DELYDLYKS 1pprM 105 :MDVYDSVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70303 # 1nox.360.33 read from T0547.t04.many.frag # found chain 1nox in training set T0547 360 :DELYDLYKS 1nox 34 :REILEAALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70304 # 1xkrA.360.85 read from T0547.t04.many.frag # found chain 1xkrA in training set T0547 360 :DELYDLYKS 1xkrA 85 :KKILEILTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=70305 # 1c1kA.360.117 read from T0547.t04.many.frag # found chain 1c1kA in training set T0547 360 :DELYDLYKS 1c1kA 118 :RNIYYFSKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70306 # 1u5uA.360.146 read from T0547.t04.many.frag # found chain 1u5uA in template set T0547 360 :DELYDLYKS 1u5uA 147 :SPSLEDFVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70307 # 1wb4A.360.236 read from T0547.t04.many.frag # found chain 1wb4A in training set T0547 360 :DELYDLYKS 1wb4A 1025 :NPQIEAMKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70308 1hs6A expands to /projects/compbio/data/pdb/1hs6.pdb.gz 1hs6A:# 1hs6A.360.469 read from T0547.t04.many.frag # adding 1hs6A to template set # found chain 1hs6A in template set T0547 360 :DELYDLYKS 1hs6A 469 :IALSQRWIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=70309 # 1iuqA.360.254 read from T0547.t04.many.frag # found chain 1iuqA in training set T0547 360 :DELYDLYKS 1iuqA 256 :DNMRRLIQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=70310 # 1oznA.360.243 read from T0547.t04.many.frag # found chain 1oznA in training set T0547 360 :DELYDLYKS 1oznA 269 :RPLWAWLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70311 # 1o9iA.360.189 read from T0547.t04.many.frag # found chain 1o9iA in training set T0547 360 :DELYDLYKS 1o9iA 190 :EELEEKYGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70312 # 2b6cA.360.125 read from T0547.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0547)S368 (2b6cA)G131 because T (delta_L) conformation "forbidden" or filtered. T0547 360 :DELYDLYK 2b6cA 123 :PTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 1 total=70313 # 1rz2A.360.71 read from T0547.t04.many.frag # found chain 1rz2A in training set T0547 360 :DELYDLYKS 1rz2A 72 :KALQQINQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70314 # 2fokA.361.392 read from T0547.t04.many.frag # found chain 2fokA in template set T0547 361 :ELYDLYKSI 2fokA 393 :KKSELRHKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70315 # 1scfA.361.145 read from T0547.t04.many.frag # found chain 1scfA in template set T0547 361 :ELYDLYKSI 1scfA 121 :RSIDAFKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70316 # 1f74A.361.174 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 361 :ELYDLYKSI 1f74A 175 :RLKKAYPNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=70317 # 1no7A.361.383 read from T0547.t04.many.frag # found chain 1no7A in template set T0547 361 :ELYDLYKSI 1no7A 834 :RVYATLQNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=70318 # 1sjwA.361.9 read from T0547.t04.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)R19 T0547 361 :ELYDLYKS 1sjwA 10 :RMVSAFNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=70319 # 1jqlB.361.98 read from T0547.t04.many.frag # found chain 1jqlB in template set Warning: unaligning (T0547)K367 (1jqlB)H105 because Y (epsilon') conformation "forbidden" or filtered. T0547 361 :ELYDLY 1jqlB 99 :TLTGLL T0547 368 :SI 1jqlB 106 :DD Number of specific fragments extracted= 2 number of extra gaps= 1 total=70321 # 3thiA.361.125 read from T0547.t04.many.frag # found chain 3thiA in template set Warning: unaligning (T0547)K367 (3thiA)G140 because S (epsilon) conformation "forbidden" or filtered. T0547 361 :ELYDLY 3thiA 134 :ELYKKI T0547 368 :SI 3thiA 141 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=70323 # 1p2xA.361.74 read from T0547.t04.many.frag # found chain 1p2xA in template set T0547 361 :ELYDLYKSI 1p2xA 106 :KFLDFIHGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70324 # 1xkrA.361.86 read from T0547.t04.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)S368 (1xkrA)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 361 :ELYDLYK 1xkrA 86 :KILEILT T0547 369 :I 1xkrA 94 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=70326 # 1k47A.361.277 read from T0547.t04.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)K367 (1k47A)Q282 because P (beta_P) conformation "forbidden" or filtered. T0547 361 :ELYDLY 1k47A 276 :QLKEAS T0547 368 :SI 1k47A 283 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=70328 # 1xtoA.361.61 read from T0547.t04.many.frag # found chain 1xtoA in template set T0547 361 :ELYDLYKSI 1xtoA 62 :AQLQAFAPM Number of specific fragments extracted= 1 number of extra gaps= 0 total=70329 # 1rp4A.361.266 read from T0547.t04.many.frag # found chain 1rp4A in template set T0547 361 :ELYDLYKSI 1rp4A 305 :KMDNVISQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70330 # 1w9zA.361.209 read from T0547.t04.many.frag # found chain 1w9zA in template set T0547 361 :ELYDLYKSI 1w9zA 210 :AMTNLVNSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70331 # 1u5uA.361.147 read from T0547.t04.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)S368 (1u5uA)P155 because G (3-10) conformation "forbidden" or filtered. T0547 361 :ELYDLYK 1u5uA 148 :PSLEDFV T0547 369 :I 1u5uA 156 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=70333 # 1knyA.361.117 read from T0547.t04.many.frag # found chain 1knyA in template set T0547 361 :ELYDLYKSI 1knyA 118 :KVYQTAKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70334 # 1whsA.361.211 read from T0547.t04.many.frag # found chain 1whsA in template set T0547 361 :ELYDLYKSI 1whsA 205 :RLKEACLHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70335 # 1kyfA.361.143 read from T0547.t04.many.frag # found chain 1kyfA in training set T0547 361 :ELYDLYKSI 1kyfA 835 :DFFQRWKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70336 # 1ecrA.361.68 read from T0547.t04.many.frag # found chain 1ecrA in template set T0547 361 :ELYDLYKSI 1ecrA 69 :LALRHFRHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70337 # 1o9iA.361.190 read from T0547.t04.many.frag # found chain 1o9iA in training set Warning: unaligning (T0547)K367 (1o9iA)G197 because S (epsilon) conformation "forbidden" or filtered. T0547 361 :ELYDLY 1o9iA 191 :ELEEKY T0547 368 :SI 1o9iA 198 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=70339 # 1ucdA.361.63 read from T0547.t04.many.frag # found chain 1ucdA in training set T0547 361 :ELYDLYKSI 1ucdA 64 :QLNTLWPNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70340 # 1t6cA.361.217 read from T0547.t04.many.frag # found chain 1t6cA in training set T0547 361 :ELYDLYKSI 1t6cA 215 :TLAALEYNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70341 # 1a8d.361.239 read from T0547.t04.many.frag # found chain 1a8d in training set T0547 361 :ELYDLYKSI 1a8d 240 :KLYTSYLSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70342 # 1gpc.361.120 read from T0547.t04.many.frag # found chain 1gpc in template set T0547 361 :ELYDLYKSI 1gpc 142 :KIWDKINAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=70343 # 1owlA.361.150 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 361 :ELYDLYKSI 1owlA 151 :PFWKNWQAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70344 # 1iuqA.361.255 read from T0547.t04.many.frag # found chain 1iuqA in training set T0547 361 :ELYDLYKSI 1iuqA 257 :NMRRLIQHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70345 # 1hs6A.361.470 read from T0547.t04.many.frag # found chain 1hs6A in template set T0547 361 :ELYDLYKSI 1hs6A 470 :ALSQRWITA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70346 # 1tu1A.361.130 read from T0547.t04.many.frag # found chain 1tu1A in template set T0547 361 :ELYDLYKSI 1tu1A 129 :AWKQAMQTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70347 # 1e29A.361.70 read from T0547.t04.many.frag # found chain 1e29A in training set T0547 361 :ELYDLYKSI 1e29A 71 :ALVEFLKNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70348 # 1vkpA.361.254 read from T0547.t04.many.frag # found chain 1vkpA in training set T0547 361 :ELYDLYKSI 1vkpA 255 :EALSVLSNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70349 # 1uw4A.361.16 read from T0547.t04.many.frag # found chain 1uw4A in template set Warning: unaligning (T0547)S368 (1uw4A)P73 because C (cis) conformation "forbidden" or filtered. T0547 361 :ELYDLYK 1uw4A 66 :QLQEHLQ T0547 369 :I 1uw4A 74 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=70351 # 2fokA.362.393 read from T0547.t04.many.frag # found chain 2fokA in template set T0547 362 :LYDLYKSIK 2fokA 394 :KSELRHKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70352 # 1scfA.362.146 read from T0547.t04.many.frag # found chain 1scfA in template set Warning: unaligning (T0547)K370 (1scfA)V130 because E (beta_S) conformation "forbidden" or filtered. T0547 362 :LYDLYKSI 1scfA 122 :SIDAFKDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=70353 # 1no7A.362.384 read from T0547.t04.many.frag # found chain 1no7A in template set T0547 362 :LYDLYKSIK 1no7A 835 :VYATLQNMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70354 # 1sjwA.362.10 read from T0547.t04.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)R19 Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE at template residue (1sjwA)R19 T0547 362 :LYDLYKS 1sjwA 11 :MVSAFNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=70355 # 1t6cA.362.218 read from T0547.t04.many.frag # found chain 1t6cA in training set T0547 362 :LYDLYKSIK 1t6cA 216 :LAALEYNVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=70356 # 1u5uA.362.148 read from T0547.t04.many.frag # found chain 1u5uA in template set T0547 362 :LYDLYKSIK 1u5uA 149 :SLEDFVPVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70357 # 1tu1A.362.131 read from T0547.t04.many.frag # found chain 1tu1A in template set T0547 362 :LYDLYKSIK 1tu1A 130 :WKQAMQTLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70358 # 1xkrA.362.87 read from T0547.t04.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)S368 (1xkrA)G93 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 (1xkrA)A95 because P (beta_P) conformation "forbidden" or filtered. T0547 362 :LYDLYK 1xkrA 87 :ILEILT T0547 369 :I 1xkrA 94 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=70360 # 1f74A.362.175 read from T0547.t04.many.frag # found chain 1f74A in training set T0547 362 :LYDLYKSIK 1f74A 176 :LKKAYPNHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70361 # 1kyfA.362.144 read from T0547.t04.many.frag # found chain 1kyfA in training set T0547 362 :LYDLYKSIK 1kyfA 836 :FFQRWKQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70362 # 1ucdA.362.64 read from T0547.t04.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)S368 (1ucdA)N71 because P (beta_P) conformation "forbidden" or filtered. T0547 362 :LYDLYK 1ucdA 65 :LNTLWP T0547 369 :IK 1ucdA 72 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=70364 # 1w9zA.362.210 read from T0547.t04.many.frag # found chain 1w9zA in template set T0547 362 :LYDLYKSIK 1w9zA 211 :MTNLVNSLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70365 # 1uw4A.362.17 read from T0547.t04.many.frag # found chain 1uw4A in template set Warning: unaligning (T0547)S368 (1uw4A)P73 because C (cis) conformation "forbidden" or filtered. T0547 362 :LYDLYK 1uw4A 67 :LQEHLQ T0547 369 :IK 1uw4A 74 :MP Number of specific fragments extracted= 2 number of extra gaps= 1 total=70367 # 1ecrA.362.69 read from T0547.t04.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)I369 (1ecrA)L77 because G (3-10) conformation "forbidden" or filtered. T0547 362 :LYDLYKS 1ecrA 70 :ALRHFRH T0547 370 :K 1ecrA 78 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=70369 # 1whsA.362.212 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)S368 (1whsA)H212 because G (3-10) conformation "forbidden" or filtered. T0547 362 :LYDLYK 1whsA 206 :LKEACL T0547 369 :IK 1whsA 213 :DS Number of specific fragments extracted= 2 number of extra gaps= 1 total=70371 # 1owlA.362.151 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 362 :LYDLYKSIK 1owlA 152 :FWKNWQAQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70372 # 3thiA.362.126 read from T0547.t04.many.frag # found chain 3thiA in template set T0547 362 :LYDLYKSIK 3thiA 135 :LYKKIGTSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=70373 # 1o9iA.362.191 read from T0547.t04.many.frag # found chain 1o9iA in training set T0547 362 :LYDLYKSIK 1o9iA 192 :LEEKYGIIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70374 # 1p2xA.362.75 read from T0547.t04.many.frag # found chain 1p2xA in template set Warning: unaligning (T0547)K370 (1p2xA)G115 because T (delta_L) conformation "forbidden" or filtered. T0547 362 :LYDLYKSI 1p2xA 107 :FLDFIHGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=70375 # 1xtoA.362.62 read from T0547.t04.many.frag # found chain 1xtoA in template set Warning: unaligning (T0547)K370 (1xtoA)Q71 because D (zeta) conformation "forbidden" or filtered. T0547 362 :LYDLYKSI 1xtoA 63 :QLQAFAPM Number of specific fragments extracted= 1 number of extra gaps= 1 total=70376 1guxA expands to /projects/compbio/data/pdb/1gux.pdb.gz 1guxA:# 1guxA.362.28 read from T0547.t04.many.frag # adding 1guxA to template set # found chain 1guxA in template set T0547 362 :LYDLYKSIK 1guxA 400 :LISYFNNCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=70377 # 1hs6A.362.471 read from T0547.t04.many.frag # found chain 1hs6A in template set T0547 362 :LYDLYKSIK 1hs6A 471 :LSQRWITAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70378 # 1knyA.362.118 read from T0547.t04.many.frag # found chain 1knyA in template set T0547 362 :LYDLYKSIK 1knyA 119 :VYQTAKSVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70379 # 1rloA.362.125 read from T0547.t04.many.frag # found chain 1rloA in template set Warning: unaligning (T0547)Y366 (1rloA)Y130 because D (zeta) conformation "forbidden" or filtered. T0547 362 :LYDL 1rloA 126 :MAKH T0547 367 :KSIK 1rloA 131 :HRLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=70381 # 1wxcA.362.154 read from T0547.t04.many.frag # found chain 1wxcA in training set T0547 362 :LYDLYKSIK 1wxcA 155 :EVESVLAIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70382 # 1ash.362.7 read from T0547.t04.many.frag # found chain 1ash in template set T0547 362 :LYDLYKSIK 1ash 7 :CMKSLEHAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70383 # 1e29A.362.71 read from T0547.t04.many.frag # found chain 1e29A in training set T0547 362 :LYDLYKSIK 1e29A 72 :LVEFLKNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70384 # 1a8d.362.240 read from T0547.t04.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE in next template residue (1a8d)F250 T0547 362 :LYDLYKSI 1a8d 241 :LYTSYLSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=70385 # 1j93A.362.343 read from T0547.t04.many.frag # found chain 1j93A in template set T0547 362 :LYDLYKSIK 1j93A 343 :FFEIAKGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70386 # 1k47A.362.278 read from T0547.t04.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)S368 (1k47A)D283 because L (left) conformation "forbidden" or filtered. T0547 362 :LYDLYK 1k47A 277 :LKEASQ T0547 369 :IK 1k47A 284 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=70388 # 2fokA.363.394 read from T0547.t04.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 2fokA 395 :SELRHKLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=70389 # 1no7A.363.385 read from T0547.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P371 (1no7A)V844 because D (zeta) conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1no7A 836 :YATLQNMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=70390 # 1scfA.363.147 read from T0547.t04.many.frag # found chain 1scfA in template set T0547 363 :YDLYKSIKP 1scfA 123 :IDAFKDFVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70391 # 1t6cA.363.219 read from T0547.t04.many.frag # found chain 1t6cA in training set T0547 363 :YDLYKSIKP 1t6cA 217 :AALEYNVYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70392 # 1u5uA.363.149 read from T0547.t04.many.frag # found chain 1u5uA in template set T0547 363 :YDLYKSIKP 1u5uA 150 :LEDFVPVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70393 # 1xkrA.363.88 read from T0547.t04.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)S368 (1xkrA)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 363 :YDLYK 1xkrA 88 :LEILT T0547 369 :IKP 1xkrA 94 :RAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=70395 # 1tu1A.363.132 read from T0547.t04.many.frag # found chain 1tu1A in template set T0547 363 :YDLYKSIKP 1tu1A 131 :KQAMQTLVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70396 # 1sjwA.363.11 read from T0547.t04.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)R19 Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE at template residue (1sjwA)R19 Warning: unaligning (T0547)P371 (1sjwA)T20 because G (3-10) conformation "forbidden" or filtered. T0547 363 :YDLYKS 1sjwA 12 :VSAFNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=70397 # 1guxA.363.29 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)P371 (1guxA)V409 because D (zeta) conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1guxA 401 :ISYFNNCT Number of specific fragments extracted= 1 number of extra gaps= 1 total=70398 # 1wxcA.363.155 read from T0547.t04.many.frag # found chain 1wxcA in training set T0547 363 :YDLYKSIKP 1wxcA 156 :VESVLAISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70399 # 1owlA.363.152 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)K370 (1owlA)P160 because P (beta_P) conformation "forbidden" or filtered. T0547 363 :YDLYKSI 1owlA 153 :WKNWQAQ T0547 371 :P 1owlA 161 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=70401 # 2audA.363.10 read from T0547.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0547)K370 (2audA)K19 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2audA)V20 because Y (epsilon') conformation "forbidden" or filtered. T0547 363 :YDLYKSI 2audA 12 :NSILIGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=70402 # 1kyfA.363.145 read from T0547.t04.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)S368 (1kyfA)Q842 because G (3-10) conformation "forbidden" or filtered. T0547 363 :YDLYK 1kyfA 837 :FQRWK T0547 369 :IKP 1kyfA 843 :LSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=70404 # 1o9iA.363.192 read from T0547.t04.many.frag # found chain 1o9iA in training set T0547 363 :YDLYKSIKP 1o9iA 193 :EEKYGIIVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70405 # 1w9zA.363.211 read from T0547.t04.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)K370 (1w9zA)V219 because P (beta_P) conformation "forbidden" or filtered. T0547 363 :YDLYKSI 1w9zA 212 :TNLVNSL T0547 371 :P 1w9zA 220 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=70407 # 1ecrA.363.70 read from T0547.t04.many.frag # found chain 1ecrA in template set T0547 363 :YDLYKSIKP 1ecrA 71 :LRHFRHLFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70408 # 1hs6A.363.472 read from T0547.t04.many.frag # found chain 1hs6A in template set T0547 363 :YDLYKSIKP 1hs6A 472 :SQRWITAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70409 # 1xtoA.363.63 read from T0547.t04.many.frag # found chain 1xtoA in template set Warning: unaligning (T0547)K370 (1xtoA)Q71 because D (zeta) conformation "forbidden" or filtered. T0547 363 :YDLYKSI 1xtoA 64 :LQAFAPM T0547 371 :P 1xtoA 72 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=70411 # 1whsA.363.213 read from T0547.t04.many.frag # found chain 1whsA in template set T0547 363 :YDLYKSIKP 1whsA 207 :KEACLHDSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70412 # 1gpc.363.122 read from T0547.t04.many.frag # found chain 1gpc in template set T0547 363 :YDLYKSIKP 1gpc 144 :WDKINAMIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70413 # 1s3eA.363.122 read from T0547.t04.many.frag # found chain 1s3eA in training set T0547 363 :YDLYKSIKP 1s3eA 123 :DDMGREIPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70414 # 1ash.363.8 read from T0547.t04.many.frag # found chain 1ash in template set Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1ash 8 :MKSLEHAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=70415 # 1jmkC.363.154 read from T0547.t04.many.frag # found chain 1jmkC in training set T0547 363 :YDLYKSIKP 1jmkC 156 :YSYYVNLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70416 # 1uw4A.363.18 read from T0547.t04.many.frag # found chain 1uw4A in template set Warning: unaligning (T0547)S368 (1uw4A)P73 because C (cis) conformation "forbidden" or filtered. T0547 363 :YDLYK 1uw4A 68 :QEHLQ T0547 369 :IKP 1uw4A 74 :MPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70418 # 1ucdA.363.65 read from T0547.t04.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1ucdA 66 :NTLWPNVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=70419 # 1gsoA.363.166 read from T0547.t04.many.frag # found chain 1gsoA in training set T0547 363 :YDLYKSIKP 1gsoA 165 :EAAVHDMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70420 1sz9A expands to /projects/compbio/data/pdb/1sz9.pdb.gz 1sz9A:# 1sz9A.363.12 read from T0547.t04.many.frag # adding 1sz9A to template set # found chain 1sz9A in template set Warning: unaligning (T0547)P371 (1sz9A)F21 because Y (epsilon') conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1sz9A 13 :NSILEELT Number of specific fragments extracted= 1 number of extra gaps= 1 total=70421 # 1k8wA.363.149 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)S368 (1k8wA)Q142 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I369 (1k8wA)G143 because L (left) conformation "forbidden" or filtered. T0547 363 :YDLYK 1k8wA 137 :YEYAR T0547 370 :KP 1k8wA 144 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70423 # 1p2xA.363.76 read from T0547.t04.many.frag # found chain 1p2xA in template set T0547 363 :YDLYKSIKP 1p2xA 108 :LDFIHGIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70424 # 1rloA.363.126 read from T0547.t04.many.frag # found chain 1rloA in template set Warning: unaligning (T0547)Y366 (1rloA)Y130 because D (zeta) conformation "forbidden" or filtered. T0547 363 :YDL 1rloA 127 :AKH T0547 367 :KSIKP 1rloA 131 :HRLKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=70426 # 2fokA.364.395 read from T0547.t04.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 364 :DLYKSIK 2fokA 396 :ELRHKLK T0547 372 :S 2fokA 404 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=70428 # 1no7A.364.386 read from T0547.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P371 (1no7A)V844 because D (zeta) conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1no7A 837 :ATLQNMV T0547 372 :S 1no7A 845 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=70430 # 1t6cA.364.220 read from T0547.t04.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)S368 (1t6cA)N222 because L (left) conformation "forbidden" or filtered. T0547 364 :DLYK 1t6cA 218 :ALEY T0547 369 :IKPS 1t6cA 223 :VYPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=70432 # 1scfA.364.148 read from T0547.t04.many.frag # found chain 1scfA in template set T0547 364 :DLYKSIKPS 1scfA 124 :DAFKDFVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70433 # 1guxA.364.30 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)P371 (1guxA)V409 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1guxA)N410 because P (beta_P) conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1guxA 402 :SYFNNCT Number of specific fragments extracted= 1 number of extra gaps= 1 total=70434 # 1u5uA.364.150 read from T0547.t04.many.frag # found chain 1u5uA in template set T0547 364 :DLYKSIKPS 1u5uA 151 :EDFVPVEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=70435 # 2audA.364.11 read from T0547.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0547)P371 (2audA)V20 because Y (epsilon') conformation "forbidden" or filtered. T0547 364 :DLYKSIK 2audA 13 :SILIGQK T0547 372 :S 2audA 21 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=70437 # 1xkrA.364.89 read from T0547.t04.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)S368 (1xkrA)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 364 :DLYK 1xkrA 89 :EILT T0547 369 :IKPS 1xkrA 94 :RAPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=70439 # 1ash.364.9 read from T0547.t04.many.frag # found chain 1ash in template set Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1ash 9 :KSLEHAK T0547 372 :S 1ash 17 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=70441 # 1sjwA.364.12 read from T0547.t04.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)R19 Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE at template residue (1sjwA)R19 Warning: unaligning (T0547)P371 (1sjwA)T20 because G (3-10) conformation "forbidden" or filtered. T0547 364 :DLYKS 1sjwA 13 :SAFNT T0547 372 :S 1sjwA 21 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=70443 # 1k8wA.364.150 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)I369 (1k8wA)G143 because L (left) conformation "forbidden" or filtered. T0547 364 :DLYKS 1k8wA 138 :EYARQ T0547 370 :KPS 1k8wA 144 :IEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=70445 # 1tu1A.364.133 read from T0547.t04.many.frag # found chain 1tu1A in template set Warning: unaligning (T0547)S368 (1tu1A)T136 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1tu1A)R140 because P (beta_P) conformation "forbidden" or filtered. T0547 364 :DLYK 1tu1A 132 :QAMQ T0547 369 :IKP 1tu1A 137 :LVP Number of specific fragments extracted= 2 number of extra gaps= 2 total=70447 # 1s3eA.364.123 read from T0547.t04.many.frag # found chain 1s3eA in training set T0547 364 :DLYKSIKPS 1s3eA 124 :DMGREIPSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70448 # 1wxcA.364.156 read from T0547.t04.many.frag # found chain 1wxcA in training set T0547 364 :DLYKSIKPS 1wxcA 157 :ESVLAISAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=70449 # 1gpc.364.123 read from T0547.t04.many.frag # found chain 1gpc in template set T0547 364 :DLYKSIKPS 1gpc 145 :DKINAMIAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70450 # 1kyfA.364.146 read from T0547.t04.many.frag # found chain 1kyfA in training set T0547 364 :DLYKSIKPS 1kyfA 838 :QRWKQLSNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70451 # 1zbxB.364.47 read from T0547.t04.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)P371 (1zbxB)L534 because E (beta_S) conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1zbxB 527 :AMIDQMN T0547 372 :S 1zbxB 535 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=70453 # 1owlA.364.306 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 364 :DLYKSIKPS 1owlA 307 :SLWQQFPWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70454 # 1vk5A.364.46 read from T0547.t04.many.frag # found chain 1vk5A in training set T0547 364 :DLYKSIKPS 1vk5A 47 :DYMKQVPIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70455 # 1whsA.364.214 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)Y366 (1whsA)C210 because G (3-10) conformation "forbidden" or filtered. T0547 364 :DL 1whsA 208 :EA T0547 367 :KSIKPS 1whsA 211 :LHDSFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=70457 # 1ofcX.364.85 read from T0547.t04.many.frag # found chain 1ofcX in template set T0547 364 :DLYKSIKPS 1ofcX 773 :RKIDEAEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70458 # 1gsoA.364.167 read from T0547.t04.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)K370 (1gsoA)L172 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1gsoA)G174 because Y (epsilon') conformation "forbidden" or filtered. T0547 364 :DLYKSI 1gsoA 166 :AAVHDM T0547 371 :P 1gsoA 173 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=70460 # 1sz9A.364.13 read from T0547.t04.many.frag # found chain 1sz9A in template set Warning: unaligning (T0547)P371 (1sz9A)F21 because Y (epsilon') conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1sz9A 14 :SILEELT T0547 372 :S 1sz9A 22 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=70462 # 1xtoA.364.64 read from T0547.t04.many.frag # found chain 1xtoA in template set Warning: unaligning (T0547)K370 (1xtoA)Q71 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1xtoA)A73 because L (left) conformation "forbidden" or filtered. T0547 364 :DLYKSI 1xtoA 65 :QAFAPM T0547 371 :P 1xtoA 72 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=70464 # 1jmkC.364.155 read from T0547.t04.many.frag # found chain 1jmkC in training set Warning: unaligning (T0547)K370 (1jmkC)I163 because D (zeta) conformation "forbidden" or filtered. T0547 364 :DLYKSI 1jmkC 157 :SYYVNL T0547 371 :PS 1jmkC 164 :ST Number of specific fragments extracted= 2 number of extra gaps= 1 total=70466 # 1owlA.364.153 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)S372 (1owlA)P162 because P (beta_P) conformation "forbidden" or filtered. T0547 364 :DLYKSIKP 1owlA 154 :KNWQAQPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=70467 # 1ecrA.364.71 read from T0547.t04.many.frag # found chain 1ecrA in template set T0547 364 :DLYKSIKPS 1ecrA 72 :RHFRHLFIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70468 # 1w9zA.364.212 read from T0547.t04.many.frag # found chain 1w9zA in template set T0547 364 :DLYKSIKPS 1w9zA 213 :NLVNSLVPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=70469 # 1hs6A.364.473 read from T0547.t04.many.frag # found chain 1hs6A in template set T0547 364 :DLYKSIKPS 1hs6A 473 :QRWITAKED Number of specific fragments extracted= 1 number of extra gaps= 0 total=70470 # 1rloA.364.127 read from T0547.t04.many.frag # found chain 1rloA in template set T0547 364 :DLYKSIKPS 1rloA 128 :KHYHRLKPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70471 # 2fokA.365.396 read from T0547.t04.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 365 :LYKSIK 2fokA 397 :LRHKLK T0547 372 :SN 2fokA 404 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=70473 # 1no7A.365.387 read from T0547.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)S368 (1no7A)N841 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1no7A)V844 because D (zeta) conformation "forbidden" or filtered. T0547 365 :LYK 1no7A 838 :TLQ T0547 369 :IK 1no7A 842 :MV T0547 372 :SN 1no7A 845 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=70476 # 1t6cA.365.221 read from T0547.t04.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)N373 (1t6cA)D227 because E (beta_S) conformation "forbidden" or filtered. T0547 365 :LYKSIKPS 1t6cA 219 :LEYNVYPY Number of specific fragments extracted= 1 number of extra gaps= 1 total=70477 # 1guxA.365.31 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)P371 (1guxA)V409 because D (zeta) conformation "forbidden" or filtered. T0547 365 :LYKSIK 1guxA 403 :YFNNCT T0547 372 :SN 1guxA 410 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=70479 # 2audA.365.12 read from T0547.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0547)K370 (2audA)K19 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2audA)V20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2audA)A32 T0547 365 :LYKSI 2audA 14 :ILIGQ T0547 372 :S 2audA 21 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=70481 # 1scfA.365.149 read from T0547.t04.many.frag # found chain 1scfA in template set T0547 365 :LYKSIKPSN 1scfA 125 :AFKDFVVAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70482 # 1ash.365.10 read from T0547.t04.many.frag # found chain 1ash in template set Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 365 :LYKSIK 1ash 10 :SLEHAK T0547 372 :SN 1ash 17 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=70484 # 1u5uA.365.151 read from T0547.t04.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)S372 (1u5uA)G159 because S (epsilon) conformation "forbidden" or filtered. T0547 365 :LYKSIKP 1u5uA 152 :DFVPVEE T0547 373 :N 1u5uA 160 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=70486 # 1xkrA.365.90 read from T0547.t04.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)S368 (1xkrA)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 365 :LYK 1xkrA 90 :ILT T0547 369 :IKPSN 1xkrA 94 :RAPDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=70488 # 1zbxB.365.48 read from T0547.t04.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)P371 (1zbxB)L534 because E (beta_S) conformation "forbidden" or filtered. T0547 365 :LYKSIK 1zbxB 528 :MIDQMN T0547 372 :SN 1zbxB 535 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=70490 # 1s3eA.365.124 read from T0547.t04.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)S372 (1s3eA)D132 because G (3-10) conformation "forbidden" or filtered. T0547 365 :LYKSIKP 1s3eA 125 :MGREIPS T0547 373 :N 1s3eA 133 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=70492 # 1owlA.365.307 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)N373 (1owlA)N316 because L (left) conformation "forbidden" or filtered. T0547 365 :LYKSIKPS 1owlA 308 :LWQQFPWE Number of specific fragments extracted= 1 number of extra gaps= 1 total=70493 # 1k8wA.365.151 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)I369 (1k8wA)G143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1k8wA)P147 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKS 1k8wA 139 :YARQ T0547 370 :KPS 1k8wA 144 :IEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=70495 # 1tu1A.365.134 read from T0547.t04.many.frag # found chain 1tu1A in template set T0547 365 :LYKSIKPSN 1tu1A 133 :AMQTLVPRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70496 # 1vk5A.365.47 read from T0547.t04.many.frag # found chain 1vk5A in training set T0547 365 :LYKSIKPSN 1vk5A 48 :YMKQVPIPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=70497 # 1gsoA.365.168 read from T0547.t04.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)K370 (1gsoA)L172 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1gsoA)G174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1gsoA)N175 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKSI 1gsoA 167 :AVHDM T0547 371 :P 1gsoA 173 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=70499 # 1ofcX.365.86 read from T0547.t04.many.frag # found chain 1ofcX in template set Warning: unaligning (T0547)K370 (1ofcX)E779 because E (beta_S) conformation "forbidden" or filtered. T0547 365 :LYKSI 1ofcX 774 :KIDEA T0547 371 :PSN 1ofcX 780 :PLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=70501 # 1sjwA.365.13 read from T0547.t04.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)R19 Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE at template residue (1sjwA)R19 Warning: unaligning (T0547)P371 (1sjwA)T20 because G (3-10) conformation "forbidden" or filtered. T0547 365 :LYKS 1sjwA 14 :AFNT T0547 372 :SN 1sjwA 21 :DD Number of specific fragments extracted= 2 number of extra gaps= 1 total=70503 # 1ucdA.365.67 read from T0547.t04.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. T0547 365 :LYKSIK 1ucdA 68 :LWPNVL T0547 372 :SN 1ucdA 75 :AN Number of specific fragments extracted= 2 number of extra gaps= 1 total=70505 # 1jmkC.365.156 read from T0547.t04.many.frag # found chain 1jmkC in training set Warning: unaligning (T0547)N373 (1jmkC)G166 because S (epsilon) conformation "forbidden" or filtered. T0547 365 :LYKSIKPS 1jmkC 158 :YYVNLIST Number of specific fragments extracted= 1 number of extra gaps= 1 total=70506 # 1xtoA.365.65 read from T0547.t04.many.frag # found chain 1xtoA in template set Warning: unaligning (T0547)S372 (1xtoA)A73 because L (left) conformation "forbidden" or filtered. T0547 365 :LYKSIKP 1xtoA 66 :AFAPMQP T0547 373 :N 1xtoA 74 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=70508 # 1kyfA.365.147 read from T0547.t04.many.frag # found chain 1kyfA in training set T0547 365 :LYKSIKPSN 1kyfA 839 :RWKQLSNPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70509 # 1gpc.365.124 read from T0547.t04.many.frag # found chain 1gpc in template set T0547 365 :LYKSIKPSN 1gpc 146 :KINAMIAVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70510 1aa7A expands to /projects/compbio/data/pdb/1aa7.pdb.gz 1aa7A:# 1aa7A.365.9 read from T0547.t04.many.frag # adding 1aa7A to template set # found chain 1aa7A in template set Warning: unaligning (T0547)K370 (1aa7A)I15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0547 365 :LYKSI 1aa7A 10 :YVLSI T0547 371 :PS 1aa7A 16 :PS Number of specific fragments extracted= 2 number of extra gaps= 2 total=70512 # 1whsA.365.215 read from T0547.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)Y366 (1whsA)C210 because G (3-10) conformation "forbidden" or filtered. T0547 365 :L 1whsA 209 :A T0547 367 :KSIKPSN 1whsA 211 :LHDSFIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=70514 1t98A expands to /projects/compbio/data/pdb/1t98.pdb.gz 1t98A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1t98A.365.112 read from T0547.t04.many.frag # adding 1t98A to template set # found chain 1t98A in template set Warning: unaligning (T0547)P371 (1t98A)E119 because E (beta_S) conformation "forbidden" or filtered. T0547 365 :LYKSIK 1t98A 113 :YYIRQR T0547 372 :SN 1t98A 120 :FS Number of specific fragments extracted= 2 number of extra gaps= 1 total=70516 1fkmA expands to /projects/compbio/data/pdb/1fkm.pdb.gz 1fkmA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1883, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1885, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1887, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1889, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1891, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1893, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1895, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1897, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1899, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1901, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1974, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1976, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1978, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1980, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1982, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1984, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1986, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1988, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1990, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1992, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 1994, because occupancy 0.500 <= existing 0.500 in 1fkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2603, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2605, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2607, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2609, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2611, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2613, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2615, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2617, because occupancy 0.500 <= existing 0.500 in 1fkmA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2652, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2654, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2656, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2658, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2660, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2662, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2720, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2722, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2724, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2726, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2728, because occupancy 0.500 <= existing 0.500 in 1fkmA Skipped atom 2730, because occupancy 0.500 <= existing 0.500 in 1fkmA # 1fkmA.365.44 read from T0547.t04.many.frag # adding 1fkmA to template set # found chain 1fkmA in template set T0547 365 :LYKSIKPSN 1fkmA 292 :LLIGYLPVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=70517 # 1wxcA.365.157 read from T0547.t04.many.frag # found chain 1wxcA in training set Warning: unaligning (T0547)N373 (1wxcA)D166 because Y (epsilon') conformation "forbidden" or filtered. T0547 365 :LYKSIKPS 1wxcA 158 :SVLAISAY Number of specific fragments extracted= 1 number of extra gaps= 1 total=70518 1ttwA expands to /projects/compbio/data/pdb/1ttw.pdb.gz 1ttwA:# 1ttwA.365.65 read from T0547.t04.many.frag # adding 1ttwA to template set # found chain 1ttwA in template set T0547 365 :LYKSIKPSN 1ttwA 66 :ILRKNLFSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70519 # 1dd9A.365.279 read from T0547.t04.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)K370 (1dd9A)V380 because E (beta_S) conformation "forbidden" or filtered. T0547 365 :LYKSI 1dd9A 375 :SLMPQ T0547 371 :PSN 1dd9A 381 :DLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=70521 # 2fokA.366.397 read from T0547.t04.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (2fokA)V404 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (2fokA)P405 because P (beta_P) conformation "forbidden" or filtered. T0547 366 :YKSIK 2fokA 398 :RHKLK T0547 374 :A 2fokA 406 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=70523 # 1no7A.366.388 read from T0547.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P371 (1no7A)V844 because D (zeta) conformation "forbidden" or filtered. T0547 366 :YKSIK 1no7A 839 :LQNMV T0547 372 :SNA 1no7A 845 :PEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=70525 # 1t6cA.366.222 read from T0547.t04.many.frag # found chain 1t6cA in training set T0547 366 :YKSIKPSNA 1t6cA 220 :EYNVYPYDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70526 # 1guxA.366.32 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)P371 (1guxA)V409 because D (zeta) conformation "forbidden" or filtered. T0547 366 :YKSIK 1guxA 404 :FNNCT T0547 372 :SNA 1guxA 410 :NPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=70528 # 2audA.366.13 read from T0547.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0547)P371 (2audA)V20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (2audA)K21 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2audA)A32 T0547 366 :YKSIK 2audA 15 :LIGQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=70529 # 1ash.366.11 read from T0547.t04.many.frag # found chain 1ash in template set Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 366 :YKSIK 1ash 11 :LEHAK T0547 372 :SNA 1ash 17 :DTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=70531 # 1u5uA.366.152 read from T0547.t04.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)S372 (1u5uA)G159 because S (epsilon) conformation "forbidden" or filtered. T0547 366 :YKSIKP 1u5uA 153 :FVPVEE T0547 373 :NA 1u5uA 160 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=70533 # 1scfA.366.150 read from T0547.t04.many.frag # found chain 1scfA in template set T0547 366 :YKSIKPSNA 1scfA 126 :FKDFVVASE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70534 # 1owlA.366.308 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 366 :YKSIKPSNA 1owlA 309 :WQQFPWENR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70535 # 1s3eA.366.125 read from T0547.t04.many.frag # found chain 1s3eA in training set T0547 366 :YKSIKPSNA 1s3eA 126 :GREIPSDAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70536 # 1zbxB.366.49 read from T0547.t04.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)P371 (1zbxB)L534 because E (beta_S) conformation "forbidden" or filtered. T0547 366 :YKSIK 1zbxB 529 :IDQMN T0547 372 :SNA 1zbxB 535 :VKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=70538 # 1ofcX.366.87 read from T0547.t04.many.frag # found chain 1ofcX in template set Warning: unaligning (T0547)S372 (1ofcX)L781 because P (beta_P) conformation "forbidden" or filtered. T0547 366 :YKSIKP 1ofcX 775 :IDEAEP T0547 373 :NA 1ofcX 782 :TE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70540 # 1xkrA.366.91 read from T0547.t04.many.frag # found chain 1xkrA in training set T0547 366 :YKSIKPSNA 1xkrA 91 :LTGRAPDNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70541 # 1t98A.366.113 read from T0547.t04.many.frag # found chain 1t98A in template set Warning: unaligning (T0547)P371 (1t98A)E119 because E (beta_S) conformation "forbidden" or filtered. T0547 366 :YKSIK 1t98A 114 :YIRQR T0547 372 :SNA 1t98A 120 :FST Number of specific fragments extracted= 2 number of extra gaps= 1 total=70543 # 1h7sA.366.238 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)K370 (1h7sA)V243 because D (zeta) conformation "forbidden" or filtered. T0547 366 :YKSI 1h7sA 239 :LIPF T0547 371 :PSNA 1h7sA 244 :QLPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=70545 # 1fkmA.366.45 read from T0547.t04.many.frag # found chain 1fkmA in template set Warning: unaligning (T0547)K370 (1fkmA)L297 because P (beta_P) conformation "forbidden" or filtered. T0547 366 :YKSI 1fkmA 293 :LIGY T0547 371 :PSNA 1fkmA 298 :PVNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=70547 # 1hbkA.366.64 read from T0547.t04.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)P371 (1hbkA)N65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1hbkA)N67 because P (beta_P) conformation "forbidden" or filtered. T0547 366 :YKSIK 1hbkA 60 :WKSVE T0547 372 :S 1hbkA 66 :L T0547 374 :A 1hbkA 68 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=70550 # 1ucdA.366.68 read from T0547.t04.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)I369 (1ucdA)V72 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. T0547 366 :YKS 1ucdA 69 :WPN T0547 370 :K 1ucdA 73 :L T0547 372 :SNA 1ucdA 75 :ANN Number of specific fragments extracted= 3 number of extra gaps= 2 total=70553 # 1vk5A.366.48 read from T0547.t04.many.frag # found chain 1vk5A in training set T0547 366 :YKSIKPSNA 1vk5A 49 :MKQVPIPTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=70554 # 1k8wA.366.152 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)I369 (1k8wA)G143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1k8wA)R148 because E (beta_S) conformation "forbidden" or filtered. T0547 366 :YKS 1k8wA 140 :ARQ T0547 370 :KPSN 1k8wA 144 :IEVP Number of specific fragments extracted= 2 number of extra gaps= 2 total=70556 # 1dd9A.366.280 read from T0547.t04.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)K370 (1dd9A)V380 because E (beta_S) conformation "forbidden" or filtered. T0547 366 :YKSI 1dd9A 376 :LMPQ T0547 371 :PSNA 1dd9A 381 :DLST Number of specific fragments extracted= 2 number of extra gaps= 1 total=70558 # 2a5yB.366.211 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)P371 (2a5yB)L217 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (2a5yB)N219 because G (3-10) conformation "forbidden" or filtered. T0547 366 :YKSIK 2a5yB 212 :KSEDD T0547 372 :S 2a5yB 218 :L T0547 374 :A 2a5yB 220 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=70561 # 1hs6A.366.475 read from T0547.t04.many.frag # found chain 1hs6A in template set T0547 366 :YKSIKPSNA 1hs6A 475 :WITAKEDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70562 # 1gsoA.366.169 read from T0547.t04.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)K367 (1gsoA)H169 because G (3-10) conformation "forbidden" or filtered. T0547 366 :Y 1gsoA 168 :V T0547 368 :SIKPSNA 1gsoA 170 :DMLAGNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=70564 # 1wxcA.366.158 read from T0547.t04.many.frag # found chain 1wxcA in training set T0547 366 :YKSIKPSNA 1wxcA 159 :VLAISAYDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70565 # 1okcA.366.37 read from T0547.t04.many.frag # found chain 1okcA in template set T0547 366 :YKSIKPSNA 1okcA 38 :QHASKQISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70566 # 1sjwA.366.14 read from T0547.t04.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)S368 (1sjwA)T17 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)R19 Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE at template residue (1sjwA)R19 Warning: unaligning (T0547)P371 (1sjwA)T20 because G (3-10) conformation "forbidden" or filtered. T0547 366 :YK 1sjwA 15 :FN T0547 372 :SNA 1sjwA 21 :DDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=70568 # 1lrv.366.93 read from T0547.t04.many.frag # found chain 1lrv in template set T0547 366 :YKSIKPSNA 1lrv 94 :VAYRLPREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70569 # 1tovA.366.11 read from T0547.t04.many.frag # found chain 1tovA in training set Warning: unaligning (T0547)S372 (1tovA)G149 because T (delta_L) conformation "forbidden" or filtered. T0547 366 :YKSIKP 1tovA 143 :AKNIMV T0547 373 :NA 1tovA 150 :NR Number of specific fragments extracted= 2 number of extra gaps= 1 total=70571 # 1rloA.366.129 read from T0547.t04.many.frag # found chain 1rloA in template set T0547 366 :YKSIKPSNA 1rloA 130 :YHRLKPVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70572 # 1no7A.367.389 read from T0547.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P371 (1no7A)V844 because D (zeta) conformation "forbidden" or filtered. T0547 367 :KSIK 1no7A 840 :QNMV T0547 372 :SNAL 1no7A 845 :PEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=70574 # 2fokA.367.398 read from T0547.t04.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 367 :KSIK 2fokA 399 :HKLK T0547 372 :SNAL 2fokA 404 :VPHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70576 # 1t6cA.367.223 read from T0547.t04.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)S368 (1t6cA)N222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1t6cA)Y226 because P (beta_P) conformation "forbidden" or filtered. T0547 367 :K 1t6cA 221 :Y T0547 369 :IKP 1t6cA 223 :VYP T0547 373 :NAL 1t6cA 227 :DPQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=70579 # 1guxA.367.33 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)P371 (1guxA)V409 because D (zeta) conformation "forbidden" or filtered. T0547 367 :KSIK 1guxA 405 :NNCT T0547 372 :SNAL 1guxA 410 :NPKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70581 # 2audA.367.14 read from T0547.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0547)P371 (2audA)V20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2audA)A32 T0547 367 :KSIK 2audA 16 :IGQK T0547 372 :S 2audA 21 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=70583 # 1ash.367.12 read from T0547.t04.many.frag # found chain 1ash in template set Warning: unaligning (T0547)K370 (1ash)K15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 367 :KSI 1ash 12 :EHA T0547 372 :SNAL 1ash 17 :DTSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=70585 # 1zbxB.367.50 read from T0547.t04.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)P371 (1zbxB)L534 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1zbxB)V535 because P (beta_P) conformation "forbidden" or filtered. T0547 367 :KSIK 1zbxB 530 :DQMN T0547 373 :NAL 1zbxB 536 :KWN Number of specific fragments extracted= 2 number of extra gaps= 1 total=70587 # 1owlA.367.309 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 367 :KSIKPSNAL 1owlA 310 :QQFPWENRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70588 # 1u5uA.367.153 read from T0547.t04.many.frag # found chain 1u5uA in template set T0547 367 :KSIKPSNAL 1u5uA 154 :VPVEEGDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70589 # 1ofcX.367.88 read from T0547.t04.many.frag # found chain 1ofcX in template set Warning: unaligning (T0547)S368 (1ofcX)E777 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1ofcX)L781 because P (beta_P) conformation "forbidden" or filtered. T0547 367 :K 1ofcX 776 :D T0547 369 :IKP 1ofcX 778 :AEP T0547 373 :NAL 1ofcX 782 :TEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=70592 # 1s3eA.367.126 read from T0547.t04.many.frag # found chain 1s3eA in training set T0547 367 :KSIKPSNAL 1s3eA 127 :REIPSDAPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=70593 # 1xkrA.367.92 read from T0547.t04.many.frag # found chain 1xkrA in training set T0547 367 :KSIKPSNAL 1xkrA 92 :TGRAPDNLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70594 # 1ucdA.367.69 read from T0547.t04.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. T0547 367 :KSIK 1ucdA 70 :PNVL T0547 372 :SNAL 1ucdA 75 :ANNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=70596 # 1fkmA.367.46 read from T0547.t04.many.frag # found chain 1fkmA in template set Warning: unaligning (T0547)K367 (1fkmA)I294 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S368 (1fkmA)G295 because T (delta_L) conformation "forbidden" or filtered. T0547 369 :IKPSNAL 1fkmA 296 :YLPVNTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=70597 # 1hbkA.367.65 read from T0547.t04.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)I369 (1hbkA)V63 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1hbkA)N65 because T (delta_L) conformation "forbidden" or filtered. T0547 367 :KS 1hbkA 61 :KS T0547 370 :K 1hbkA 64 :E T0547 372 :SNAL 1hbkA 66 :LNRE Number of specific fragments extracted= 3 number of extra gaps= 2 total=70600 # 2a5yB.367.212 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)P371 (2a5yB)L217 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (2a5yB)F220 because P (beta_P) conformation "forbidden" or filtered. T0547 367 :KSIK 2a5yB 213 :SEDD T0547 372 :SN 2a5yB 218 :LN T0547 375 :L 2a5yB 221 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=70603 # 1scfA.367.151 read from T0547.t04.many.frag # found chain 1scfA in template set Warning: unaligning (T0547)A374 (1scfA)E134 because G (3-10) conformation "forbidden" or filtered. T0547 367 :KSIKPSN 1scfA 127 :KDFVVAS T0547 375 :L 1scfA 135 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=70605 # 1f9vA.367.245 read from T0547.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0547)K367 (1f9vA)A628 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I369 (1f9vA)S630 because G (3-10) conformation "forbidden" or filtered. T0547 368 :S 1f9vA 629 :G T0547 370 :KPSNAL 1f9vA 631 :ERINVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=70607 # 1l0bA.367.199 read from T0547.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)I369 (1l0bA)Y1790 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1l0bA)D1794 because P (beta_P) conformation "forbidden" or filtered. T0547 367 :KS 1l0bA 1788 :SV T0547 370 :KPS 1l0bA 1791 :RCR T0547 374 :AL 1l0bA 1795 :LD Number of specific fragments extracted= 3 number of extra gaps= 2 total=70610 # 1okcA.367.38 read from T0547.t04.many.frag # found chain 1okcA in template set T0547 367 :KSIKPSNAL 1okcA 39 :HASKQISAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70611 # 1t98A.367.114 read from T0547.t04.many.frag # found chain 1t98A in template set Warning: unaligning (T0547)P371 (1t98A)E119 because E (beta_S) conformation "forbidden" or filtered. T0547 367 :KSIK 1t98A 115 :IRQR T0547 372 :SNAL 1t98A 120 :FSTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=70613 # 1sjwA.367.15 read from T0547.t04.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)R19 Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE at template residue (1sjwA)R19 Warning: unaligning (T0547)P371 (1sjwA)T20 because G (3-10) conformation "forbidden" or filtered. T0547 367 :KS 1sjwA 16 :NT T0547 372 :SNAL 1sjwA 21 :DDVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=70615 # 1h7sA.367.239 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)A374 (1h7sA)P247 because P (beta_P) conformation "forbidden" or filtered. T0547 367 :KSIKPSN 1h7sA 240 :IPFVQLP T0547 375 :L 1h7sA 248 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=70617 # 1lrv.367.94 read from T0547.t04.many.frag # found chain 1lrv in template set T0547 367 :KSIKPSNAL 1lrv 95 :AYRLPREQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70618 # 1dd9A.367.281 read from T0547.t04.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)S372 (1dd9A)L382 because G (3-10) conformation "forbidden" or filtered. T0547 367 :KSIKP 1dd9A 377 :MPQVD T0547 373 :NAL 1dd9A 383 :STP Number of specific fragments extracted= 2 number of extra gaps= 1 total=70620 # 1vk5A.367.49 read from T0547.t04.many.frag # found chain 1vk5A in training set Warning: unaligning (T0547)S368 (1vk5A)Q51 because G (3-10) conformation "forbidden" or filtered. T0547 367 :K 1vk5A 50 :K T0547 369 :IKPSNAL 1vk5A 52 :VPIPTNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=70622 # 1uzbA.367.346 read from T0547.t04.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)P371 (1uzbA)V351 because E (beta_S) conformation "forbidden" or filtered. T0547 367 :KSIK 1uzbA 347 :ERLS T0547 372 :SNAL 1uzbA 352 :GPAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70624 # 1q92A.367.30 read from T0547.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0547)P371 (1q92A)F66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)E70 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)E70 T0547 367 :KSIK 1q92A 62 :PDQP T0547 372 :SN 1q92A 67 :IA Number of specific fragments extracted= 2 number of extra gaps= 2 total=70626 # 2d0tA.367.62 read from T0547.t04.many.frag # found chain 2d0tA in template set T0547 367 :KSIKPSNAL 2d0tA 60 :EKLNMLSID Number of specific fragments extracted= 1 number of extra gaps= 0 total=70627 # 1k8wA.367.153 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)I369 (1k8wA)G143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1k8wA)P147 because P (beta_P) conformation "forbidden" or filtered. T0547 367 :KS 1k8wA 141 :RQ T0547 370 :KPS 1k8wA 144 :IEV T0547 374 :AL 1k8wA 148 :RE Number of specific fragments extracted= 3 number of extra gaps= 2 total=70630 # 1guxA.368.34 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)P371 (1guxA)V409 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1guxA)N410 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SIK 1guxA 406 :NCT T0547 373 :NALE 1guxA 411 :PKES Number of specific fragments extracted= 2 number of extra gaps= 1 total=70632 # 1ash.368.13 read from T0547.t04.many.frag # found chain 1ash in template set Warning: unaligning (T0547)K370 (1ash)K15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 368 :SI 1ash 13 :HA T0547 372 :SNALE 1ash 17 :DTSNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70634 # 2fokA.368.399 read from T0547.t04.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 368 :SIK 2fokA 400 :KLK T0547 372 :SNALE 2fokA 404 :VPHEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=70636 # 1no7A.368.390 read from T0547.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P371 (1no7A)V844 because D (zeta) conformation "forbidden" or filtered. T0547 368 :SIK 1no7A 841 :NMV T0547 372 :SNALE 1no7A 845 :PEIAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=70638 # 1zbxB.368.51 read from T0547.t04.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)P371 (1zbxB)L534 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1zbxB)V535 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SIK 1zbxB 531 :QMN T0547 373 :NALE 1zbxB 536 :KWND Number of specific fragments extracted= 2 number of extra gaps= 1 total=70640 # 1t6cA.368.224 read from T0547.t04.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)S368 (1t6cA)N222 because L (left) conformation "forbidden" or filtered. T0547 369 :IKPSNALE 1t6cA 223 :VYPYDPQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=70641 # 2audA.368.15 read from T0547.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0547)P371 (2audA)V20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (2audA)K21 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2audA)A32 T0547 368 :SIK 2audA 17 :GQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=70642 # 1f9vA.368.246 read from T0547.t04.many.frag # found chain 1f9vA in training set T0547 368 :SIKPSNALE 1f9vA 629 :GSERINVSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70643 # 1ijbA.368.174 read from T0547.t04.many.frag # found chain 1ijbA in training set Warning: unaligning (T0547)P371 (1ijbA)L677 because E (beta_S) conformation "forbidden" or filtered. T0547 368 :SIK 1ijbA 674 :AFV T0547 372 :SNALE 1ijbA 678 :SSVDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70645 # 1okcA.368.39 read from T0547.t04.many.frag # found chain 1okcA in template set T0547 368 :SIKPSNALE 1okcA 40 :ASKQISAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70646 # 1ucdA.368.70 read from T0547.t04.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1ucdA)N76 because D (zeta) conformation "forbidden" or filtered. T0547 368 :SIK 1ucdA 71 :NVL T0547 372 :S 1ucdA 75 :A T0547 374 :ALE 1ucdA 77 :NQQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=70649 # 1owlA.368.310 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)N373 (1owlA)N316 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1owlA)R317 because N (gamma') conformation "forbidden" or filtered. T0547 368 :SIKPS 1owlA 311 :QFPWE T0547 375 :LE 1owlA 318 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=70651 # 1l0bA.368.200 read from T0547.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)I369 (1l0bA)Y1790 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1l0bA)D1794 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :S 1l0bA 1789 :V T0547 370 :KPS 1l0bA 1791 :RCR T0547 374 :ALE 1l0bA 1795 :LDA Number of specific fragments extracted= 3 number of extra gaps= 2 total=70654 # 1hbkA.368.66 read from T0547.t04.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)I369 (1hbkA)V63 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1hbkA)N65 because T (delta_L) conformation "forbidden" or filtered. T0547 368 :S 1hbkA 62 :S T0547 370 :K 1hbkA 64 :E T0547 372 :SNALE 1hbkA 66 :LNRED Number of specific fragments extracted= 3 number of extra gaps= 2 total=70657 # 1fkmA.368.47 read from T0547.t04.many.frag # found chain 1fkmA in template set T0547 368 :SIKPSNALE 1fkmA 295 :GYLPVNTKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70658 # 1xkrA.368.93 read from T0547.t04.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)S368 (1xkrA)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 369 :IKPSNALE 1xkrA 94 :RAPDNLLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=70659 # 2a5yB.368.213 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)P371 (2a5yB)L217 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (2a5yB)S222 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SIK 2a5yB 214 :EDD T0547 372 :SNAL 2a5yB 218 :LNFP Number of specific fragments extracted= 2 number of extra gaps= 2 total=70661 # 1ofcX.368.89 read from T0547.t04.many.frag # found chain 1ofcX in template set Warning: unaligning (T0547)K370 (1ofcX)E779 because E (beta_S) conformation "forbidden" or filtered. T0547 368 :SI 1ofcX 777 :EA T0547 371 :PSNALE 1ofcX 780 :PLTEEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70663 # 1sjwA.368.16 read from T0547.t04.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)R19 Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE at template residue (1sjwA)R19 Warning: unaligning (T0547)P371 (1sjwA)T20 because G (3-10) conformation "forbidden" or filtered. T0547 368 :S 1sjwA 17 :T T0547 372 :SNALE 1sjwA 21 :DDVDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70665 # 1t98A.368.115 read from T0547.t04.many.frag # found chain 1t98A in template set Warning: unaligning (T0547)P371 (1t98A)E119 because E (beta_S) conformation "forbidden" or filtered. T0547 368 :SIK 1t98A 116 :RQR T0547 372 :SNALE 1t98A 120 :FSTLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=70667 # 1uzbA.368.347 read from T0547.t04.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)P371 (1uzbA)V351 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1uzbA)P353 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SIK 1uzbA 348 :RLS T0547 372 :S 1uzbA 352 :G T0547 374 :ALE 1uzbA 354 :AEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=70670 # 1q92A.368.31 read from T0547.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0547)P371 (1q92A)F66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)E70 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)E70 T0547 368 :SIK 1q92A 63 :DQP T0547 372 :SN 1q92A 67 :IA T0547 376 :E 1q92A 71 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=70673 # 1lrv.368.95 read from T0547.t04.many.frag # found chain 1lrv in template set Warning: unaligning (T0547)K370 (1lrv)L98 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SI 1lrv 96 :YR T0547 371 :PSNALE 1lrv 99 :PREQLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=70675 # 1dd9A.368.282 read from T0547.t04.many.frag # found chain 1dd9A in training set T0547 368 :SIKPSNALE 1dd9A 378 :PQVDLSTPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70676 # 1u5uA.368.154 read from T0547.t04.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)K370 (1u5uA)E157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1u5uA)G159 because S (epsilon) conformation "forbidden" or filtered. T0547 368 :SI 1u5uA 155 :PV T0547 371 :P 1u5uA 158 :E T0547 373 :NALE 1u5uA 160 :DAAE Number of specific fragments extracted= 3 number of extra gaps= 2 total=70679 # 1s3eA.368.127 read from T0547.t04.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)S372 (1s3eA)D132 because G (3-10) conformation "forbidden" or filtered. T0547 368 :SIKP 1s3eA 128 :EIPS T0547 373 :NALE 1s3eA 133 :APWK Number of specific fragments extracted= 2 number of extra gaps= 1 total=70681 # 1s5dA.368.151 read from T0547.t04.many.frag # found chain 1s5dA in training set T0547 368 :SIKPSNALE 1s5dA 152 :NLDIAPAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70682 # 1xv5A.368.249 read from T0547.t04.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)K370 (1xv5A)E1251 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1xv5A)Y1252 because E (beta_S) conformation "forbidden" or filtered. T0547 368 :SI 1xv5A 1249 :PY T0547 372 :SNALE 1xv5A 1253 :YGNRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70684 # 1l0bA.368.82 read from T0547.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)N373 (1l0bA)S1676 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SIKPS 1l0bA 1671 :ERKLL T0547 374 :ALE 1l0bA 1677 :VHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70686 # 1tfe.368.49 read from T0547.t04.many.frag # found chain 1tfe in training set Warning: unaligning (T0547)S368 (1tfe)N104 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 (1tfe)R106 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1tfe)Y107 because E (beta_S) conformation "forbidden" or filtered. T0547 369 :I 1tfe 105 :P T0547 372 :SNALE 1tfe 108 :VSAEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=70688 # 1ash.369.14 read from T0547.t04.many.frag # found chain 1ash in template set Warning: unaligning (T0547)K370 (1ash)K15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 369 :I 1ash 14 :A T0547 372 :SNALEY 1ash 17 :DTSNEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=70690 # 1ijbA.369.175 read from T0547.t04.many.frag # found chain 1ijbA in training set Warning: unaligning (T0547)K370 (1ijbA)V676 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1ijbA)L677 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1ijbA)S679 because Y (epsilon') conformation "forbidden" or filtered. T0547 369 :I 1ijbA 675 :F T0547 372 :S 1ijbA 678 :S T0547 374 :ALEY 1ijbA 680 :VDEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=70693 # 1guxA.369.35 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)P371 (1guxA)V409 because D (zeta) conformation "forbidden" or filtered. T0547 369 :IK 1guxA 407 :CT T0547 372 :SNALEY 1guxA 410 :NPKESI Number of specific fragments extracted= 2 number of extra gaps= 1 total=70695 # 1okcA.369.40 read from T0547.t04.many.frag # found chain 1okcA in template set T0547 369 :IKPSNALEY 1okcA 41 :SKQISAEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70696 # 2audA.369.16 read from T0547.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0547)P371 (2audA)V20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2audA)A32 T0547 369 :IK 2audA 18 :QK T0547 372 :S 2audA 21 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=70698 # 1no7A.369.391 read from T0547.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P371 (1no7A)V844 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1no7A)P849 because P (beta_P) conformation "forbidden" or filtered. T0547 369 :IK 1no7A 842 :MV T0547 372 :SNAL 1no7A 845 :PEIA T0547 377 :Y 1no7A 850 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=70701 # 2fokA.369.400 read from T0547.t04.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 369 :IK 2fokA 401 :LK T0547 372 :SNALEY 2fokA 404 :VPHEYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=70703 # 1zbxB.369.52 read from T0547.t04.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)P371 (1zbxB)L534 because E (beta_S) conformation "forbidden" or filtered. T0547 369 :IK 1zbxB 532 :MN T0547 372 :SNALEY 1zbxB 535 :VKWNDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=70705 # 1dd9A.369.283 read from T0547.t04.many.frag # found chain 1dd9A in training set T0547 369 :IKPSNALEY 1dd9A 379 :QVDLSTPDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=70706 # 1ucdA.369.71 read from T0547.t04.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. T0547 369 :IK 1ucdA 72 :VL T0547 372 :SNALEY 1ucdA 75 :ANNQQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=70708 # 1t6cA.369.225 read from T0547.t04.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)P371 (1t6cA)P225 because C (cis) conformation "forbidden" or filtered. T0547 369 :IK 1t6cA 223 :VY T0547 372 :SNALEY 1t6cA 226 :YDPQKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=70710 # 1f9vA.369.247 read from T0547.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0547)I369 (1f9vA)S630 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 (1f9vA)E631 because P (beta_P) conformation "forbidden" or filtered. T0547 371 :PSNALEY 1f9vA 632 :RINVSQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=70711 # 1fkmA.369.48 read from T0547.t04.many.frag # found chain 1fkmA in template set T0547 369 :IKPSNALEY 1fkmA 296 :YLPVNTKRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70712 # 1hbkA.369.67 read from T0547.t04.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)P371 (1hbkA)N65 because T (delta_L) conformation "forbidden" or filtered. T0547 369 :IK 1hbkA 63 :VE T0547 372 :SNALEY 1hbkA 66 :LNREDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=70714 # 1xkrA.369.94 read from T0547.t04.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)N373 (1xkrA)N98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1xkrA)N101 because D (zeta) conformation "forbidden" or filtered. T0547 369 :IKPS 1xkrA 94 :RAPD T0547 374 :AL 1xkrA 99 :LL T0547 377 :Y 1xkrA 102 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=70717 # 2a5yB.369.214 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)P371 (2a5yB)L217 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (2a5yB)N219 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (2a5yB)S222 because P (beta_P) conformation "forbidden" or filtered. T0547 369 :IK 2a5yB 215 :DD T0547 372 :S 2a5yB 218 :L T0547 374 :AL 2a5yB 220 :FP T0547 377 :Y 2a5yB 223 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=70721 # 1l0bA.369.201 read from T0547.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)I369 (1l0bA)Y1790 because L (left) conformation "forbidden" or filtered. T0547 370 :KPSNALEY 1l0bA 1791 :RCRDLDAY Number of specific fragments extracted= 1 number of extra gaps= 1 total=70722 # 1lrv.369.96 read from T0547.t04.many.frag # found chain 1lrv in template set Warning: unaligning (T0547)I369 (1lrv)R97 because G (3-10) conformation "forbidden" or filtered. T0547 370 :KPSNALEY 1lrv 98 :LPREQLSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=70723 # 1t98A.369.116 read from T0547.t04.many.frag # found chain 1t98A in template set Warning: unaligning (T0547)P371 (1t98A)E119 because E (beta_S) conformation "forbidden" or filtered. T0547 369 :IK 1t98A 117 :QR T0547 372 :SNALEY 1t98A 120 :FSTLRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=70725 # 1j7xA.369.75 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 369 :IKPSNALEY 1j7xA 77 :GDSIQAENI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70726 # 1l0bA.369.83 read from T0547.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)Y377 (1l0bA)F1680 because G (3-10) conformation "forbidden" or filtered. T0547 369 :IKPSNALE 1l0bA 1672 :RKLLSVHE Number of specific fragments extracted= 1 number of extra gaps= 1 total=70727 # 1owlA.369.311 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)K370 (1owlA)P313 because N (gamma') conformation "forbidden" or filtered. T0547 369 :I 1owlA 312 :F T0547 371 :PSNALEY 1owlA 314 :WENREAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=70729 # 1sjwA.369.17 read from T0547.t04.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)R19 Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE at template residue (1sjwA)R19 Warning: unaligning (T0547)P371 (1sjwA)T20 because G (3-10) conformation "forbidden" or filtered. T0547 372 :SNALEY 1sjwA 21 :DDVDEY Number of specific fragments extracted= 1 number of extra gaps= 1 total=70730 # 1i4wA.369.237 read from T0547.t04.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)K370 (1i4wA)I227 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1i4wA)L228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1i4wA)F229 because Y (epsilon') conformation "forbidden" or filtered. T0547 369 :I 1i4wA 226 :P T0547 373 :NALEY 1i4wA 230 :SAAEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=70732 # 1q92A.369.32 read from T0547.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0547)K370 (1q92A)P65 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1q92A)F66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)E70 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)E70 T0547 369 :I 1q92A 64 :Q T0547 372 :SN 1q92A 67 :IA T0547 376 :EY 1q92A 71 :DR Number of specific fragments extracted= 3 number of extra gaps= 2 total=70735 # 1ofcX.369.90 read from T0547.t04.many.frag # found chain 1ofcX in template set Warning: unaligning (T0547)K370 (1ofcX)E779 because E (beta_S) conformation "forbidden" or filtered. T0547 369 :I 1ofcX 778 :A T0547 371 :PSNALEY 1ofcX 780 :PLTEEEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=70737 # 1s5dA.369.152 read from T0547.t04.many.frag # found chain 1s5dA in training set T0547 369 :IKPSNALEY 1s5dA 153 :LDIAPAADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=70738 # 1tfe.369.50 read from T0547.t04.many.frag # found chain 1tfe in training set Warning: unaligning (T0547)P371 (1tfe)Y107 because E (beta_S) conformation "forbidden" or filtered. T0547 369 :IK 1tfe 105 :PR T0547 372 :SNALEY 1tfe 108 :VSAEEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=70740 # 1k8wA.369.155 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)I369 (1k8wA)G143 because L (left) conformation "forbidden" or filtered. T0547 370 :KPSNALEY 1k8wA 144 :IEVPREAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=70741 # 1uzbA.369.348 read from T0547.t04.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)P371 (1uzbA)V351 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1uzbA)G352 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y377 (1uzbA)N357 because L (left) conformation "forbidden" or filtered. T0547 369 :IK 1uzbA 349 :LS T0547 373 :NALE 1uzbA 353 :PAEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=70743 # 1okcA.370.41 read from T0547.t04.many.frag # found chain 1okcA in template set T0547 370 :KPSNALEYL 1okcA 42 :KQISAEKQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=70744 # 1ijbA.370.176 read from T0547.t04.many.frag # found chain 1ijbA in training set Warning: unaligning (T0547)P371 (1ijbA)L677 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1ijbA)S679 because Y (epsilon') conformation "forbidden" or filtered. T0547 370 :K 1ijbA 676 :V T0547 372 :S 1ijbA 678 :S T0547 374 :ALEYL 1ijbA 680 :VDELE Number of specific fragments extracted= 3 number of extra gaps= 2 total=70747 # 1ash.370.15 read from T0547.t04.many.frag # found chain 1ash in template set Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 370 :K 1ash 15 :K T0547 372 :SNALEYL 1ash 17 :DTSNEAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=70749 # 1j7xA.370.76 read from T0547.t04.many.frag # found chain 1j7xA in training set Warning: unaligning (T0547)K370 (1j7xA)D78 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1j7xA)Q81 because P (beta_P) conformation "forbidden" or filtered. T0547 371 :PS 1j7xA 79 :SI T0547 374 :ALEYL 1j7xA 82 :AENIP Number of specific fragments extracted= 2 number of extra gaps= 2 total=70751 # 1f9vA.370.248 read from T0547.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0547)L378 (1f9vA)V639 because Y (epsilon') conformation "forbidden" or filtered. T0547 370 :KPSNALEY 1f9vA 631 :ERINVSQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=70752 # 1dd9A.370.284 read from T0547.t04.many.frag # found chain 1dd9A in training set T0547 370 :KPSNALEYL 1dd9A 380 :VDLSTPDGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70753 # 1hbkA.370.68 read from T0547.t04.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)P371 (1hbkA)N65 because T (delta_L) conformation "forbidden" or filtered. T0547 370 :K 1hbkA 64 :E T0547 372 :SNALEYL 1hbkA 66 :LNREDAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=70755 # 1guxA.370.36 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)P371 (1guxA)V409 because D (zeta) conformation "forbidden" or filtered. T0547 370 :K 1guxA 408 :T T0547 372 :SNALEYL 1guxA 410 :NPKESIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=70757 # 2audA.370.17 read from T0547.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0547)P371 (2audA)V20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (2audA)K21 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2audA)A32 T0547 370 :K 2audA 19 :K Number of specific fragments extracted= 1 number of extra gaps= 1 total=70758 # 1fkmA.370.49 read from T0547.t04.many.frag # found chain 1fkmA in template set T0547 370 :KPSNALEYL 1fkmA 297 :LPVNTKRQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70759 # 2a5yB.370.215 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)K370 (2a5yB)D216 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2a5yB)L217 because G (3-10) conformation "forbidden" or filtered. T0547 372 :SNALEYL 2a5yB 218 :LNFPSVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=70760 # 1xkrA.370.95 read from T0547.t04.many.frag # found chain 1xkrA in training set T0547 370 :KPSNALEYL 1xkrA 95 :APDNLLNLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70761 # 1zbxB.370.53 read from T0547.t04.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)P371 (1zbxB)L534 because E (beta_S) conformation "forbidden" or filtered. T0547 370 :K 1zbxB 533 :N T0547 372 :SNALEYL 1zbxB 535 :VKWNDFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=70763 # 2fokA.370.401 read from T0547.t04.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 370 :K 2fokA 402 :K T0547 372 :SNALEYL 2fokA 404 :VPHEYIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70765 # 1ucdA.370.72 read from T0547.t04.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1ucdA)N76 because D (zeta) conformation "forbidden" or filtered. T0547 370 :K 1ucdA 73 :L T0547 372 :S 1ucdA 75 :A T0547 374 :ALEYL 1ucdA 77 :NQQFW Number of specific fragments extracted= 3 number of extra gaps= 2 total=70768 # 1l0bA.370.202 read from T0547.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)N373 (1l0bA)D1794 because P (beta_P) conformation "forbidden" or filtered. T0547 370 :KPS 1l0bA 1791 :RCR T0547 374 :ALEYL 1l0bA 1795 :LDAYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=70770 # 1l0bA.370.84 read from T0547.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)S372 (1l0bA)L1675 because P (beta_P) conformation "forbidden" or filtered. T0547 370 :KP 1l0bA 1673 :KL T0547 373 :NALEYL 1l0bA 1676 :SVHEFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70772 # 1t98A.370.117 read from T0547.t04.many.frag # found chain 1t98A in template set Warning: unaligning (T0547)P371 (1t98A)E119 because E (beta_S) conformation "forbidden" or filtered. T0547 370 :K 1t98A 118 :R T0547 372 :SNALEYL 1t98A 120 :FSTLRLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=70774 # 1q92A.370.33 read from T0547.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0547)P371 (1q92A)F66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)E70 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)E70 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)G74 T0547 370 :K 1q92A 65 :P T0547 372 :SN 1q92A 67 :IA T0547 376 :EY 1q92A 71 :DR Number of specific fragments extracted= 3 number of extra gaps= 3 total=70777 # 1t6cA.370.226 read from T0547.t04.many.frag # found chain 1t6cA in training set Warning: unaligning (T0547)N373 (1t6cA)D227 because E (beta_S) conformation "forbidden" or filtered. T0547 370 :KPS 1t6cA 224 :YPY T0547 374 :ALEYL 1t6cA 228 :PQKVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=70779 # 1owlA.370.159 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)N373 (1owlA)T163 because P (beta_P) conformation "forbidden" or filtered. T0547 370 :KPS 1owlA 160 :PKP T0547 374 :ALEYL 1owlA 164 :PVATP Number of specific fragments extracted= 2 number of extra gaps= 1 total=70781 # 1lrv.370.97 read from T0547.t04.many.frag # found chain 1lrv in template set T0547 370 :KPSNALEYL 1lrv 98 :LPREQLSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70782 # 1sjwA.370.18 read from T0547.t04.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE at template residue (1sjwA)R19 Warning: unaligning (T0547)P371 (1sjwA)T20 because G (3-10) conformation "forbidden" or filtered. T0547 372 :SNALEYL 1sjwA 21 :DDVDEYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=70783 # 1tl9A.370.197 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 370 :KPSNALEYL 1tl9A 223 :EWYDLQKAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=70784 # 1no7A.370.392 read from T0547.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P371 (1no7A)V844 because D (zeta) conformation "forbidden" or filtered. T0547 370 :K 1no7A 843 :V T0547 372 :SNALEYL 1no7A 845 :PEIAPGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=70786 # 1tfe.370.51 read from T0547.t04.many.frag # found chain 1tfe in training set Warning: unaligning (T0547)P371 (1tfe)Y107 because E (beta_S) conformation "forbidden" or filtered. T0547 370 :K 1tfe 106 :R T0547 372 :SNALEYL 1tfe 108 :VSAEEIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=70788 # 1s5dA.370.153 read from T0547.t04.many.frag # found chain 1s5dA in training set T0547 370 :KPSNALEYL 1s5dA 154 :DIAPAADGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=70789 # 1i4wA.370.238 read from T0547.t04.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)P371 (1i4wA)L228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1i4wA)F229 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1i4wA)S230 because E (beta_S) conformation "forbidden" or filtered. T0547 370 :K 1i4wA 227 :I T0547 374 :ALEYL 1i4wA 231 :AAEIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=70791 # 1k8wA.370.156 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)N373 (1k8wA)P147 because P (beta_P) conformation "forbidden" or filtered. T0547 370 :KPS 1k8wA 144 :IEV T0547 374 :ALEYL 1k8wA 148 :REARP Number of specific fragments extracted= 2 number of extra gaps= 1 total=70793 # 2ahrA.370.150 read from T0547.t04.many.frag # found chain 2ahrA in template set T0547 370 :KPSNALEYL 2ahrA 148 :FDISEKDFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70794 # 1ijbA.371.177 read from T0547.t04.many.frag # found chain 1ijbA in training set Warning: unaligning (T0547)P371 (1ijbA)L677 because E (beta_S) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1ijbA 678 :SSVDELEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=70795 # 1j7xA.371.77 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 371 :PSNALEYLH 1j7xA 79 :SIQAENIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70796 # 1okcA.371.42 read from T0547.t04.many.frag # found chain 1okcA in template set T0547 371 :PSNALEYLH 1okcA 43 :QISAEKQYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70797 # 1f9vA.371.249 read from T0547.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0547)H379 (1f9vA)G640 because S (epsilon) conformation "forbidden" or filtered. T0547 371 :PSNALEYL 1f9vA 632 :RINVSQVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=70798 # 1ash.371.16 read from T0547.t04.many.frag # found chain 1ash in template set Warning: unaligning (T0547)P371 (1ash)V16 because G (3-10) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1ash 17 :DTSNEARQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=70799 # 2a5yB.371.216 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)P371 (2a5yB)L217 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (2a5yB)N219 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (2a5yB)F220 because P (beta_P) conformation "forbidden" or filtered. T0547 372 :S 2a5yB 218 :L T0547 375 :LEYLH 2a5yB 221 :PSVEH Number of specific fragments extracted= 2 number of extra gaps= 2 total=70801 # 1guxA.371.37 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)P371 (1guxA)V409 because D (zeta) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1guxA 410 :NPKESILK Number of specific fragments extracted= 1 number of extra gaps= 1 total=70802 # 1hbkA.371.69 read from T0547.t04.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)P371 (1hbkA)N65 because T (delta_L) conformation "forbidden" or filtered. T0547 372 :SNALEYL 1hbkA 66 :LNREDAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=70803 # 1dd9A.371.285 read from T0547.t04.many.frag # found chain 1dd9A in training set T0547 371 :PSNALEYLH 1dd9A 381 :DLSTPDGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70804 # 1fkmA.371.50 read from T0547.t04.many.frag # found chain 1fkmA in template set T0547 371 :PSNALEYLH 1fkmA 298 :PVNTKRQEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=70805 # 1xkrA.371.96 read from T0547.t04.many.frag # found chain 1xkrA in training set T0547 371 :PSNALEYLH 1xkrA 96 :PDNLLNLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70806 # 1l0bA.371.203 read from T0547.t04.many.frag # found chain 1l0bA in template set T0547 371 :PSNALEYLH 1l0bA 1792 :CRDLDAYLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70807 # 1tl9A.371.198 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 371 :PSNALEYLH 1tl9A 224 :WYDLQKAPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70808 # 1owlA.371.160 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)S372 (1owlA)P162 because P (beta_P) conformation "forbidden" or filtered. T0547 371 :P 1owlA 161 :K T0547 373 :NALEYLH 1owlA 163 :TPVATPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=70810 # 1l0bA.371.85 read from T0547.t04.many.frag # found chain 1l0bA in template set T0547 371 :PSNALEYLH 1l0bA 1674 :LLSVHEFEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70811 # 2audA.371.18 read from T0547.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0547)P371 (2audA)V20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2audA)A32 T0547 372 :S 2audA 21 :K Number of specific fragments extracted= 1 number of extra gaps= 1 total=70812 # 1t98A.371.118 read from T0547.t04.many.frag # found chain 1t98A in template set Warning: unaligning (T0547)P371 (1t98A)E119 because E (beta_S) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1t98A 120 :FSTLRLSM Number of specific fragments extracted= 1 number of extra gaps= 1 total=70813 # 1sjwA.371.19 read from T0547.t04.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)P371 (1sjwA)T20 because G (3-10) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1sjwA 21 :DDVDEYIH Number of specific fragments extracted= 1 number of extra gaps= 1 total=70814 # 1q92A.371.34 read from T0547.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0547)P371 (1q92A)F66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)E70 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)E70 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)G74 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)G74 T0547 372 :SN 1q92A 67 :IA T0547 376 :EY 1q92A 71 :DR Number of specific fragments extracted= 2 number of extra gaps= 3 total=70816 # 1tfe.371.52 read from T0547.t04.many.frag # found chain 1tfe in training set Warning: unaligning (T0547)P371 (1tfe)Y107 because E (beta_S) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1tfe 108 :VSAEEIPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=70817 # 1zbxB.371.54 read from T0547.t04.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)P371 (1zbxB)L534 because E (beta_S) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1zbxB 535 :VKWNDFKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=70818 # 7odcA.371.341 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 371 :PSNALEYLH 7odcA 342 :KRPKPDEKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=70819 # 1ucdA.371.73 read from T0547.t04.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P371 (1ucdA)R74 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1ucdA 75 :ANNQQFWS Number of specific fragments extracted= 1 number of extra gaps= 1 total=70820 # 1ru3A.371.357 read from T0547.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)P371 (1ru3A)M358 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1ru3A)G360 because P (beta_P) conformation "forbidden" or filtered. T0547 372 :S 1ru3A 359 :V T0547 374 :ALEYLH 1ru3A 361 :PDEIED Number of specific fragments extracted= 2 number of extra gaps= 2 total=70822 # 1bgc.371.57 read from T0547.t04.many.frag # found chain 1bgc in training set Warning: unaligning (T0547)P371 (1bgc)Q59 because E (beta_S) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1bgc 60 :APLSSCSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=70823 # 2fokA.371.402 read from T0547.t04.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 2fokA 404 :VPHEYIEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=70824 # 1lrv.371.98 read from T0547.t04.many.frag # found chain 1lrv in template set T0547 371 :PSNALEYLH 1lrv 99 :PREQLSALM Number of specific fragments extracted= 1 number of extra gaps= 0 total=70825 # 1yu0A.371.45 read from T0547.t04.many.frag # found chain 1yu0A in training set Warning: unaligning (T0547)H379 (1yu0A)K54 because P (beta_P) conformation "forbidden" or filtered. T0547 371 :PSNALEYL 1yu0A 46 :PLARHDLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=70826 # 1i4wA.371.239 read from T0547.t04.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)P371 (1i4wA)L228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1i4wA)F229 because Y (epsilon') conformation "forbidden" or filtered. T0547 373 :NALEYLH 1i4wA 230 :SAAEIWP Number of specific fragments extracted= 1 number of extra gaps= 1 total=70827 # 1uzbA.371.350 read from T0547.t04.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)P371 (1uzbA)V351 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1uzbA)G352 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y377 (1uzbA)N357 because L (left) conformation "forbidden" or filtered. T0547 373 :NALE 1uzbA 353 :PAEE T0547 378 :LH 1uzbA 358 :PD Number of specific fragments extracted= 2 number of extra gaps= 2 total=70829 # 1j7xA.372.78 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 372 :SNALEYLHD 1j7xA 80 :IQAENIPED Number of specific fragments extracted= 1 number of extra gaps= 0 total=70830 # 1ijbA.372.178 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 372 :SNALEYLHD 1ijbA 678 :SSVDELEQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70831 # 1okcA.372.43 read from T0547.t04.many.frag # found chain 1okcA in template set Warning: unaligning (T0547)D380 (1okcA)G52 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1okcA 44 :ISAEKQYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=70832 # 1tl9A.372.199 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 372 :SNALEYLHD 1tl9A 225 :YDLQKAPSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70833 # 1f9vA.372.250 read from T0547.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0547)L378 (1f9vA)V639 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H379 (1f9vA)G640 because S (epsilon) conformation "forbidden" or filtered. T0547 372 :SNALEY 1f9vA 633 :INVSQV T0547 380 :D 1f9vA 641 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=70835 # 1owlA.372.161 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)N373 (1owlA)T163 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1owlA)A166 because P (beta_P) conformation "forbidden" or filtered. T0547 372 :S 1owlA 162 :P T0547 374 :AL 1owlA 164 :PV T0547 377 :YLHD 1owlA 167 :TPTE Number of specific fragments extracted= 3 number of extra gaps= 2 total=70838 # 1ash.372.17 read from T0547.t04.many.frag # found chain 1ash in template set T0547 372 :SNALEYLHD 1ash 17 :DTSNEARQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70839 # 1dd9A.372.286 read from T0547.t04.many.frag # found chain 1dd9A in training set T0547 372 :SNALEYLHD 1dd9A 382 :LSTPDGRAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70840 # 7odcA.372.342 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A374 (7odcA)K345 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (7odcA)D347 because L (left) conformation "forbidden" or filtered. T0547 372 :SN 7odcA 343 :RP T0547 375 :L 7odcA 346 :P T0547 377 :YLHD 7odcA 348 :EKYY Number of specific fragments extracted= 3 number of extra gaps= 2 total=70843 # 1l0bA.372.204 read from T0547.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)N373 (1l0bA)D1794 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 because last residue in template chain is (1l0bA)Q1801 T0547 372 :S 1l0bA 1793 :R T0547 374 :ALEYLH 1l0bA 1795 :LDAYLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=70845 # 2a5yB.372.217 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)Y377 (2a5yB)V223 because G (3-10) conformation "forbidden" or filtered. T0547 372 :SNALE 2a5yB 218 :LNFPS T0547 378 :LHD 2a5yB 224 :EHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=70847 # 1fkmA.372.51 read from T0547.t04.many.frag # found chain 1fkmA in template set T0547 372 :SNALEYLHD 1fkmA 299 :VNTKRQEGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70848 # 1guxA.372.38 read from T0547.t04.many.frag # found chain 1guxA in template set T0547 372 :SNALEYLHD 1guxA 410 :NPKESILKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70849 # 1l0bA.372.86 read from T0547.t04.many.frag # found chain 1l0bA in template set T0547 372 :SNALEYLHD 1l0bA 1675 :LSVHEFEVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70850 # 1hbkA.372.70 read from T0547.t04.many.frag # found chain 1hbkA in template set Warning: unaligning (T0547)N373 (1hbkA)N67 because P (beta_P) conformation "forbidden" or filtered. T0547 372 :S 1hbkA 66 :L T0547 374 :ALEYL 1hbkA 68 :REDAQ T0547 380 :D 1hbkA 73 :K Number of specific fragments extracted= 3 number of extra gaps= 1 total=70853 # 1ru3A.372.358 read from T0547.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)D380 (1ru3A)G367 because T (delta_L) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1ru3A 359 :VGPDEIED Number of specific fragments extracted= 1 number of extra gaps= 1 total=70854 # 1t98A.372.119 read from T0547.t04.many.frag # found chain 1t98A in template set Warning: unaligning (T0547)N373 (1t98A)S121 because P (beta_P) conformation "forbidden" or filtered. T0547 372 :S 1t98A 120 :F T0547 374 :ALEYLHD 1t98A 122 :TLRLSMQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=70856 # 1q92A.372.35 read from T0547.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)E70 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)E70 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)G74 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)G74 T0547 372 :SN 1q92A 67 :IA T0547 376 :EY 1q92A 71 :DR T0547 380 :D 1q92A 75 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=70859 # 1xkrA.372.97 read from T0547.t04.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)E376 (1xkrA)N101 because D (zeta) conformation "forbidden" or filtered. T0547 372 :SNAL 1xkrA 97 :DNLL T0547 377 :YLHD 1xkrA 102 :LDEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=70861 # 2audA.372.19 read from T0547.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2audA)A32 T0547 372 :S 2audA 21 :K Number of specific fragments extracted= 1 number of extra gaps= 0 total=70862 # 1tfe.372.53 read from T0547.t04.many.frag # found chain 1tfe in training set T0547 372 :SNALEYLHD 1tfe 108 :VSAEEIPAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70863 # 1sjwA.372.20 read from T0547.t04.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)D380 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)D30 T0547 372 :SNALEYLH 1sjwA 21 :DDVDEYIH Number of specific fragments extracted= 1 number of extra gaps= 1 total=70864 # 1yu0A.372.46 read from T0547.t04.many.frag # found chain 1yu0A in training set Warning: unaligning (T0547)A374 (1yu0A)R49 because P (beta_P) conformation "forbidden" or filtered. T0547 372 :SN 1yu0A 47 :LA T0547 375 :LEYLHD 1yu0A 50 :HDLVKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=70866 # 1lrv.372.99 read from T0547.t04.many.frag # found chain 1lrv in template set T0547 372 :SNALEYLHD 1lrv 100 :REQLSALMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70867 # 1sur.372.200 read from T0547.t04.many.frag # found chain 1sur in template set Warning: unaligning (T0547)L378 (1sur)G207 because T (delta_L) conformation "forbidden" or filtered. T0547 372 :SNALEY 1sur 201 :HPLWDE T0547 379 :HD 1sur 208 :YL Number of specific fragments extracted= 2 number of extra gaps= 1 total=70869 # 2yhx.372.415 read from T0547.t04.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)A374 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X419 Warning: unaligning (T0547)L375 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X420 Warning: unaligning (T0547)D380 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X425 T0547 372 :SN 2yhx 417 :SA T0547 376 :EYLH 2yhx 421 :SKPI Number of specific fragments extracted= 2 number of extra gaps= 2 total=70871 # 1bgc.372.58 read from T0547.t04.many.frag # found chain 1bgc in training set T0547 372 :SNALEYLHD 1bgc 60 :APLSSCSSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70872 # 1knwA.372.324 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N373 (1knwA)S326 because P (beta_P) conformation "forbidden" or filtered. T0547 372 :S 1knwA 325 :R T0547 374 :ALEYLHD 1knwA 327 :LEHAPTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=70874 # 1zbxB.372.55 read from T0547.t04.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)D380 (1zbxB)Y543 because E (beta_S) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1zbxB 535 :VKWNDFKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=70875 # 1gvnA.372.55 read from T0547.t04.many.frag # found chain 1gvnA in template set T0547 372 :SNALEYLHD 1gvnA 56 :VNLFDYSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70876 # 1j7xA.373.79 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 373 :NALEYLHDS 1j7xA 81 :QAENIPEDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70877 # 1okcA.373.44 read from T0547.t04.many.frag # found chain 1okcA in template set Warning: unaligning (T0547)D380 (1okcA)G52 because Y (epsilon') conformation "forbidden" or filtered. T0547 373 :NALEYLH 1okcA 45 :SAEKQYK T0547 381 :S 1okcA 53 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=70879 # 1tl9A.373.200 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 373 :NALEYLHDS 1tl9A 226 :DLQKAPSDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70880 # 1owlA.373.162 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)N373 (1owlA)T163 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1owlA)E170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1owlA)L171 because P (beta_P) conformation "forbidden" or filtered. T0547 374 :ALEYLH 1owlA 164 :PVATPT Number of specific fragments extracted= 1 number of extra gaps= 2 total=70881 # 1ijbA.373.179 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 373 :NALEYLHDS 1ijbA 679 :SVDELEQQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70882 # 1f9vA.373.251 read from T0547.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0547)L378 (1f9vA)V639 because Y (epsilon') conformation "forbidden" or filtered. T0547 373 :NALEY 1f9vA 634 :NVSQV T0547 379 :HDS 1f9vA 640 :GDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=70884 # 7odcA.373.343 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E376 (7odcA)D347 because L (left) conformation "forbidden" or filtered. T0547 373 :NAL 7odcA 344 :PKP T0547 377 :YLHDS 7odcA 348 :EKYYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=70886 # 1dd9A.373.287 read from T0547.t04.many.frag # found chain 1dd9A in training set T0547 373 :NALEYLHDS 1dd9A 383 :STPDGRARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70887 # 1ash.373.18 read from T0547.t04.many.frag # found chain 1ash in template set T0547 373 :NALEYLHDS 1ash 18 :TSNEARQDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=70888 # 1l0bA.373.205 read from T0547.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)D380 because last residue in template chain is (1l0bA)Q1801 T0547 373 :NALEYLH 1l0bA 1794 :DLDAYLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70889 # 1ru3A.373.359 read from T0547.t04.many.frag # found chain 1ru3A in template set T0547 373 :NALEYLHDS 1ru3A 360 :GPDEIEDGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70890 # 1knwA.373.325 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 373 :NALEYLHDS 1knwA 326 :SLEHAPTVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70891 # 1fkmA.373.52 read from T0547.t04.many.frag # found chain 1fkmA in template set T0547 373 :NALEYLHDS 1fkmA 300 :NTKRQEGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70892 # 1guxA.373.39 read from T0547.t04.many.frag # found chain 1guxA in template set T0547 373 :NALEYLHDS 1guxA 411 :PKESILKRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70893 # 2a5yB.373.218 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)N373 (2a5yB)N219 because G (3-10) conformation "forbidden" or filtered. T0547 374 :ALEYLHDS 2a5yB 220 :FPSVEHVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=70894 # 1q92A.373.36 read from T0547.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0547)A374 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)E70 Warning: unaligning (T0547)L375 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)E70 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)G74 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)G74 T0547 373 :N 1q92A 68 :A T0547 376 :EY 1q92A 71 :DR T0547 380 :DS 1q92A 75 :FW Number of specific fragments extracted= 3 number of extra gaps= 2 total=70897 # 1sjwA.373.21 read from T0547.t04.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)D380 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)D30 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE at template residue (1sjwA)D30 T0547 373 :NALEYLH 1sjwA 22 :DVDEYIH Number of specific fragments extracted= 1 number of extra gaps= 1 total=70898 # 4dpvZ.373.74 read from T0547.t04.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)A374 (4dpvZ)S76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (4dpvZ)N78 because E (beta_S) conformation "forbidden" or filtered. T0547 373 :N 4dpvZ 75 :E T0547 375 :L 4dpvZ 77 :E T0547 377 :YLHDS 4dpvZ 79 :YRRVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=70901 # 1tfe.373.54 read from T0547.t04.many.frag # found chain 1tfe in training set T0547 373 :NALEYLHDS 1tfe 109 :SAEEIPAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70902 # 1t98A.373.120 read from T0547.t04.many.frag # found chain 1t98A in template set T0547 373 :NALEYLHDS 1t98A 121 :STLRLSMQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70903 # 1yu0A.373.47 read from T0547.t04.many.frag # found chain 1yu0A in training set Warning: unaligning (T0547)N373 (1yu0A)A48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1yu0A)T55 because T (delta_L) conformation "forbidden" or filtered. T0547 374 :ALEYLH 1yu0A 49 :RHDLVK T0547 381 :S 1yu0A 56 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=70905 # 1l0bA.373.87 read from T0547.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)N373 (1l0bA)S1676 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1l0bA)G1684 because Y (epsilon') conformation "forbidden" or filtered. T0547 374 :ALEYLHD 1l0bA 1677 :VHEFEVK Number of specific fragments extracted= 1 number of extra gaps= 2 total=70906 # 1bgc.373.59 read from T0547.t04.many.frag # found chain 1bgc in training set T0547 373 :NALEYLHDS 1bgc 61 :PLSSCSSQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70907 # 1gvnA.373.56 read from T0547.t04.many.frag # found chain 1gvnA in template set T0547 373 :NALEYLHDS 1gvnA 57 :NLFDYSLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70908 # 1sur.373.201 read from T0547.t04.many.frag # found chain 1sur in template set Warning: unaligning (T0547)S381 (1sur)S210 because Y (epsilon') conformation "forbidden" or filtered. T0547 373 :NALEYLHD 1sur 202 :PLWDEGYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=70909 # 1n5uA.373.293 read from T0547.t04.many.frag # found chain 1n5uA in template set Warning: unaligning (T0547)N373 (1n5uA)E294 because P (beta_P) conformation "forbidden" or filtered. T0547 374 :ALEYLHDS 1n5uA 295 :NDEMPADL Number of specific fragments extracted= 1 number of extra gaps= 1 total=70910 # 2audA.373.20 read from T0547.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0547)N373 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2audA)A32 Number of specific fragments extracted= 0 number of extra gaps= 0 total=70910 # 1xkrA.373.98 read from T0547.t04.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)A374 (1xkrA)L99 because G (3-10) conformation "forbidden" or filtered. T0547 373 :N 1xkrA 98 :N T0547 375 :LEYLHDS 1xkrA 100 :LNLDEFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=70912 # 1iapA.373.140 read from T0547.t04.many.frag # found chain 1iapA in template set Warning: unaligning (T0547)N373 (1iapA)D182 because E (beta_S) conformation "forbidden" or filtered. T0547 374 :ALEYLHDS 1iapA 183 :RASYEARE Number of specific fragments extracted= 1 number of extra gaps= 1 total=70913 # 1rfyA.373.27 read from T0547.t04.many.frag # found chain 1rfyA in training set T0547 373 :NALEYLHDS 1rfyA 28 :DLETITIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70914 # 1j7xA.374.80 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 374 :ALEYLHDSI 1j7xA 82 :AENIPEDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70915 # 1tl9A.374.201 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 374 :ALEYLHDSI 1tl9A 227 :LQKAPSDLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=70916 # 7odcA.374.344 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A374 (7odcA)K345 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (7odcA)D347 because L (left) conformation "forbidden" or filtered. T0547 375 :L 7odcA 346 :P T0547 377 :YLHDSI 7odcA 348 :EKYYSS Number of specific fragments extracted= 2 number of extra gaps= 2 total=70918 # 1owlA.374.163 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 374 :ALEYLHDSI 1owlA 164 :PVATPTELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70919 # 1okcA.374.45 read from T0547.t04.many.frag # found chain 1okcA in template set Warning: unaligning (T0547)D380 (1okcA)G52 because Y (epsilon') conformation "forbidden" or filtered. T0547 374 :ALEYLH 1okcA 46 :AEKQYK T0547 381 :SI 1okcA 53 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=70921 # 1ijbA.374.180 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 374 :ALEYLHDSI 1ijbA 680 :VDELEQQRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70922 # 1knwA.374.326 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 374 :ALEYLHDSI 1knwA 327 :LEHAPTVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=70923 # 1f9vA.374.252 read from T0547.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0547)L378 (1f9vA)V639 because Y (epsilon') conformation "forbidden" or filtered. T0547 374 :ALEY 1f9vA 635 :VSQV T0547 379 :HDSI 1f9vA 640 :GDRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=70925 # 1ru3A.374.360 read from T0547.t04.many.frag # found chain 1ru3A in template set T0547 374 :ALEYLHDSI 1ru3A 361 :PDEIEDGKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70926 # 1dd9A.374.288 read from T0547.t04.many.frag # found chain 1dd9A in training set T0547 374 :ALEYLHDSI 1dd9A 384 :TPDGRARLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70927 # 1ash.374.19 read from T0547.t04.many.frag # found chain 1ash in template set T0547 374 :ALEYLHDSI 1ash 19 :SNEARQDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70928 # 4dpvZ.374.75 read from T0547.t04.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)A374 (4dpvZ)S76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (4dpvZ)V82 because E (beta_S) conformation "forbidden" or filtered. T0547 375 :LEYLH 4dpvZ 77 :ENYRR T0547 381 :SI 4dpvZ 83 :VV Number of specific fragments extracted= 2 number of extra gaps= 2 total=70930 # 2a5yB.374.219 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)D380 (2a5yB)V226 because P (beta_P) conformation "forbidden" or filtered. T0547 374 :ALEYLH 2a5yB 220 :FPSVEH T0547 381 :SI 2a5yB 227 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=70932 # 1fkmA.374.53 read from T0547.t04.many.frag # found chain 1fkmA in template set T0547 374 :ALEYLHDSI 1fkmA 301 :TKRQEGFLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70933 1puc expands to /projects/compbio/data/pdb/1puc.pdb.gz 1puc:Warning: there is no chain 1puc will retry with 1pucA Skipped atom 780, because occupancy 0.400 <= existing 0.600 in 1puc Skipped atom 782, because occupancy 0.400 <= existing 0.600 in 1puc Skipped atom 784, because occupancy 0.400 <= existing 0.600 in 1puc Skipped atom 786, because occupancy 0.400 <= existing 0.600 in 1puc # 1puc.374.31 read from T0547.t04.many.frag # adding 1puc to template set # found chain 1puc in template set Warning: unaligning (T0547)A374 (1puc)D33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1puc)R39 because Y (epsilon') conformation "forbidden" or filtered. T0547 375 :LEYLH 1puc 34 :DEYEY T0547 381 :SI 1puc 40 :HV Number of specific fragments extracted= 2 number of extra gaps= 2 total=70935 # 1guxA.374.40 read from T0547.t04.many.frag # found chain 1guxA in template set T0547 374 :ALEYLHDSI 1guxA 412 :KESILKRVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=70936 # 1l0bA.374.206 read from T0547.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0547)D380 because last residue in template chain is (1l0bA)Q1801 T0547 374 :ALEYLH 1l0bA 1795 :LDAYLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70937 # 1t98A.374.121 read from T0547.t04.many.frag # found chain 1t98A in template set T0547 374 :ALEYLHDSI 1t98A 122 :TLRLSMQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70938 # 1lb3A.374.80 read from T0547.t04.many.frag # found chain 1lb3A in training set Warning: unaligning (T0547)I382 (1lb3A)W93 because G (3-10) conformation "forbidden" or filtered. T0547 374 :ALEYLHDS 1lb3A 85 :VQKPSQDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=70939 # 1bgc.374.60 read from T0547.t04.many.frag # found chain 1bgc in training set Warning: unaligning (T0547)A374 (1bgc)L62 because G (3-10) conformation "forbidden" or filtered. T0547 375 :LEYLHDSI 1bgc 63 :SSCSSQSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=70940 # 1n5uA.374.294 read from T0547.t04.many.frag # found chain 1n5uA in template set Warning: unaligning (T0547)H379 (1n5uA)A300 because P (beta_P) conformation "forbidden" or filtered. T0547 374 :ALEYL 1n5uA 295 :NDEMP T0547 380 :DSI 1n5uA 301 :DLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=70942 # 1gvnA.374.57 read from T0547.t04.many.frag # found chain 1gvnA in template set T0547 374 :ALEYLHDSI 1gvnA 58 :LFDYSLEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70943 # 1sur.374.202 read from T0547.t04.many.frag # found chain 1sur in template set Warning: unaligning (T0547)L378 (1sur)G207 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1sur)S210 because Y (epsilon') conformation "forbidden" or filtered. T0547 374 :ALEY 1sur 203 :LWDE T0547 379 :HD 1sur 208 :YL T0547 382 :I 1sur 211 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=70946 # 1yu0A.374.48 read from T0547.t04.many.frag # found chain 1yu0A in training set T0547 374 :ALEYLHDSI 1yu0A 49 :RHDLVKTAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=70947 # 1jm1A.374.6 read from T0547.t04.many.frag # found chain 1jm1A in training set Warning: unaligning (T0547)L375 (1jm1A)A54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1jm1A)Y59 because E (beta_S) conformation "forbidden" or filtered. T0547 374 :A 1jm1A 53 :L T0547 376 :EYLH 1jm1A 55 :GFPR T0547 381 :SI 1jm1A 60 :KV Number of specific fragments extracted= 3 number of extra gaps= 2 total=70950 # 1hl9A.374.253 read from T0547.t04.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)D380 (1hl9A)W260 because E (beta_S) conformation "forbidden" or filtered. T0547 374 :ALEYLH 1hl9A 254 :RWGVPH T0547 381 :SI 1hl9A 261 :DF Number of specific fragments extracted= 2 number of extra gaps= 1 total=70952 # 1tfe.374.55 read from T0547.t04.many.frag # found chain 1tfe in training set T0547 374 :ALEYLHDSI 1tfe 110 :AEEIPAEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70953 # 1iapA.374.141 read from T0547.t04.many.frag # found chain 1iapA in template set T0547 374 :ALEYLHDSI 1iapA 183 :RASYEARER Number of specific fragments extracted= 1 number of extra gaps= 0 total=70954 # 1e4fT.374.360 read from T0547.t04.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)D380 (1e4fT)P367 because P (beta_P) conformation "forbidden" or filtered. T0547 374 :ALEYLH 1e4fT 361 :YANSDR T0547 381 :SI 1e4fT 368 :SI Number of specific fragments extracted= 2 number of extra gaps= 1 total=70956 # 1zroA.374.356 read from T0547.t04.many.frag # found chain 1zroA in template set T0547 374 :ALEYLHDSI 1zroA 357 :IDRIYDKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=70957 # 7odcA.375.345 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E376 (7odcA)D347 because L (left) conformation "forbidden" or filtered. T0547 375 :L 7odcA 346 :P T0547 377 :YLHDSID 7odcA 348 :EKYYSSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=70959 # 1tl9A.375.202 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 375 :LEYLHDSID 1tl9A 228 :QKAPSDLYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70960 # 1owlA.375.164 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 375 :LEYLHDSID 1owlA 165 :VATPTELVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=70961 # 1j7xA.375.81 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 375 :LEYLHDSID 1j7xA 83 :ENIPEDEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=70962 # 1okcA.375.46 read from T0547.t04.many.frag # found chain 1okcA in template set Warning: unaligning (T0547)D380 (1okcA)G52 because Y (epsilon') conformation "forbidden" or filtered. T0547 375 :LEYLH 1okcA 47 :EKQYK T0547 381 :SID 1okcA 53 :IID Number of specific fragments extracted= 2 number of extra gaps= 1 total=70964 # 1knwA.375.327 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 375 :LEYLHDSID 1knwA 328 :EHAPTVETV Number of specific fragments extracted= 1 number of extra gaps= 0 total=70965 # 1ru3A.375.361 read from T0547.t04.many.frag # found chain 1ru3A in template set T0547 375 :LEYLHDSID 1ru3A 362 :DEIEDGKVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70966 # 1ash.375.20 read from T0547.t04.many.frag # found chain 1ash in template set T0547 375 :LEYLHDSID 1ash 20 :NEARQDGID Number of specific fragments extracted= 1 number of extra gaps= 0 total=70967 # 1dd9A.375.289 read from T0547.t04.many.frag # found chain 1dd9A in training set T0547 375 :LEYLHDSID 1dd9A 385 :PDGRARLST Number of specific fragments extracted= 1 number of extra gaps= 0 total=70968 # 1f9vA.375.253 read from T0547.t04.many.frag # found chain 1f9vA in training set T0547 375 :LEYLHDSID 1f9vA 636 :SQVVGDRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70969 # 1puc.375.32 read from T0547.t04.many.frag # found chain 1puc in template set Warning: unaligning (T0547)D380 (1puc)R39 because Y (epsilon') conformation "forbidden" or filtered. T0547 375 :LEYLH 1puc 34 :DEYEY T0547 381 :SID 1puc 40 :HVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=70971 # 1ijbA.375.181 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 375 :LEYLHDSID 1ijbA 681 :DELEQQRDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=70972 # 4dpvZ.375.76 read from T0547.t04.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)H379 (4dpvZ)R81 because D (zeta) conformation "forbidden" or filtered. T0547 375 :LEYL 4dpvZ 77 :ENYR T0547 380 :DSID 4dpvZ 82 :VVVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=70974 # 1lb3A.375.81 read from T0547.t04.many.frag # found chain 1lb3A in training set Warning: unaligning (T0547)D383 (1lb3A)G94 because S (epsilon) conformation "forbidden" or filtered. T0547 375 :LEYLHDSI 1lb3A 86 :QKPSQDEW Number of specific fragments extracted= 1 number of extra gaps= 1 total=70975 # 1jm1A.375.7 read from T0547.t04.many.frag # found chain 1jm1A in training set T0547 375 :LEYLHDSID 1jm1A 54 :AGFPRYKVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=70976 # 1e4fT.375.361 read from T0547.t04.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)H379 (1e4fT)R366 because P (beta_P) conformation "forbidden" or filtered. T0547 375 :LEYL 1e4fT 362 :ANSD T0547 380 :DSID 1e4fT 367 :PSII Number of specific fragments extracted= 2 number of extra gaps= 1 total=70978 # 2bkxA.375.147 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D380 (2bkxA)H153 because Y (epsilon') conformation "forbidden" or filtered. T0547 375 :LEYLH 2bkxA 148 :FKSRT T0547 381 :SID 2bkxA 154 :VVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=70980 # 1e0tA.375.317 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0547 379 :HDSID 1e0tA 322 :LEAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=70981 # 2a5yB.375.220 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)H379 (2a5yB)H225 because G (3-10) conformation "forbidden" or filtered. T0547 375 :LEYL 2a5yB 221 :PSVE T0547 380 :DSID 2a5yB 226 :VTSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=70983 # 1n5uA.375.295 read from T0547.t04.many.frag # found chain 1n5uA in template set Warning: unaligning (T0547)E376 (1n5uA)E297 because P (beta_P) conformation "forbidden" or filtered. T0547 375 :L 1n5uA 296 :D T0547 377 :YLHDSID 1n5uA 298 :MPADLPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=70985 # 1gvnA.375.58 read from T0547.t04.many.frag # found chain 1gvnA in template set T0547 375 :LEYLHDSID 1gvnA 59 :FDYSLEELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70986 # 1bgc.375.61 read from T0547.t04.many.frag # found chain 1bgc in training set T0547 375 :LEYLHDSID 1bgc 63 :SSCSSQSLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=70987 # 1zb1A.375.171 read from T0547.t04.many.frag # found chain 1zb1A in template set T0547 375 :LEYLHDSID 1zb1A 167 :VDLQSENTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70988 # 1t98A.375.122 read from T0547.t04.many.frag # found chain 1t98A in template set T0547 375 :LEYLHDSID 1t98A 123 :LRLSMQLSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=70989 # 1tzlA.375.266 read from T0547.t04.many.frag # found chain 1tzlA in template set T0547 375 :LEYLHDSID 1tzlA 268 :TDAPEERFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=70990 # 1azo.375.106 read from T0547.t04.many.frag # found chain 1azo in training set Warning: unaligning (T0547)E376 (1azo)G105 because T (delta_L) conformation "forbidden" or filtered. T0547 375 :L 1azo 104 :S T0547 377 :YLHDSID 1azo 106 :VTWETSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=70992 # 1gpiA.375.235 read from T0547.t04.many.frag # found chain 1gpiA in training set Warning: unaligning (T0547)D380 (1gpiA)N241 because T (delta_L) conformation "forbidden" or filtered. T0547 375 :LEYLH 1gpiA 236 :DDCAR T0547 381 :SID 1gpiA 242 :TGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=70994 # 1szwA.375.123 read from T0547.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)S381 (1szwA)G108 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1szwA)Q110 because E (beta_S) conformation "forbidden" or filtered. T0547 375 :LEYLHD 1szwA 102 :SAFQLE T0547 382 :I 1szwA 109 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=70996 # 1fkmA.375.54 read from T0547.t04.many.frag # found chain 1fkmA in template set T0547 375 :LEYLHDSID 1fkmA 302 :KRQEGFLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=70997 # 1hl9A.375.254 read from T0547.t04.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)E376 (1hl9A)G256 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H379 (1hl9A)H259 because E (beta_S) conformation "forbidden" or filtered. T0547 375 :L 1hl9A 255 :W T0547 377 :YL 1hl9A 257 :VP T0547 380 :DSID 1hl9A 260 :WDFK Number of specific fragments extracted= 3 number of extra gaps= 2 total=71000 # 7odcA.376.346 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 376 :EYLHDSIDH 7odcA 347 :DEKYYSSSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71001 # 1tl9A.376.203 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 376 :EYLHDSIDH 1tl9A 229 :KAPSDLYQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71002 # 1owlA.376.165 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)D380 (1owlA)E170 because L (left) conformation "forbidden" or filtered. T0547 376 :EYLH 1owlA 166 :ATPT T0547 381 :SIDH 1owlA 171 :LVDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=71004 # 1j7xA.376.82 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 376 :EYLHDSIDH 1j7xA 84 :NIPEDEAML Number of specific fragments extracted= 1 number of extra gaps= 0 total=71005 # 1knwA.376.328 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 376 :EYLHDSIDH 1knwA 329 :HAPTVETVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71006 # 1ru3A.376.362 read from T0547.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)D380 (1ru3A)G367 because T (delta_L) conformation "forbidden" or filtered. T0547 376 :EYLH 1ru3A 363 :EIED T0547 381 :SIDH 1ru3A 368 :KVEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=71008 # 1okcA.376.47 read from T0547.t04.many.frag # found chain 1okcA in template set Warning: unaligning (T0547)D380 (1okcA)G52 because Y (epsilon') conformation "forbidden" or filtered. T0547 376 :EYLH 1okcA 48 :KQYK T0547 381 :SIDH 1okcA 53 :IIDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=71010 # 1puc.376.33 read from T0547.t04.many.frag # found chain 1puc in template set Warning: unaligning (T0547)D380 (1puc)R39 because Y (epsilon') conformation "forbidden" or filtered. T0547 376 :EYLH 1puc 35 :EYEY T0547 381 :SIDH 1puc 40 :HVML Number of specific fragments extracted= 2 number of extra gaps= 1 total=71012 # 2bkxA.376.148 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D380 (2bkxA)H153 because Y (epsilon') conformation "forbidden" or filtered. T0547 376 :EYLH 2bkxA 149 :KSRT T0547 381 :SIDH 2bkxA 154 :VVTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=71014 # 1dd9A.376.290 read from T0547.t04.many.frag # found chain 1dd9A in training set T0547 376 :EYLHDSIDH 1dd9A 386 :DGRARLSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71015 # 1ijbA.376.182 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 376 :EYLHDSIDH 1ijbA 682 :ELEQQRDEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71016 # 1ash.376.21 read from T0547.t04.many.frag # found chain 1ash in template set T0547 376 :EYLHDSIDH 1ash 21 :EARQDGIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71017 # 1e0tA.376.318 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0547 379 :HDSIDH 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71018 # 1lb3A.376.82 read from T0547.t04.many.frag # found chain 1lb3A in training set T0547 376 :EYLHDSIDH 1lb3A 87 :KPSQDEWGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71019 # 4dpvZ.376.77 read from T0547.t04.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)D380 (4dpvZ)V82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (4dpvZ)N86 because G (3-10) conformation "forbidden" or filtered. T0547 376 :EYLH 4dpvZ 78 :NYRR T0547 381 :SID 4dpvZ 83 :VVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=71021 # 1e4fT.376.362 read from T0547.t04.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)H384 (1e4fT)N371 because L (left) conformation "forbidden" or filtered. T0547 376 :EYLHDSID 1e4fT 363 :NSDRPSII Number of specific fragments extracted= 1 number of extra gaps= 1 total=71022 # 1f9vA.376.254 read from T0547.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0547)L378 (1f9vA)V639 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H379 (1f9vA)G640 because S (epsilon) conformation "forbidden" or filtered. T0547 376 :EY 1f9vA 637 :QV T0547 380 :DSIDH 1f9vA 641 :DRLRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71024 # 1t98A.376.123 read from T0547.t04.many.frag # found chain 1t98A in template set T0547 376 :EYLHDSIDH 1t98A 124 :RLSMQLSIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71025 # 2a5yB.376.221 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)H379 (2a5yB)H225 because G (3-10) conformation "forbidden" or filtered. T0547 376 :EYL 2a5yB 222 :SVE T0547 380 :DSIDH 2a5yB 226 :VTSVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=71027 # 1azo.376.107 read from T0547.t04.many.frag # found chain 1azo in training set Warning: unaligning (T0547)E376 (1azo)G105 because T (delta_L) conformation "forbidden" or filtered. T0547 377 :YLHDSIDH 1azo 106 :VTWETSHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=71028 # 1dxrC.376.97 read from T0547.t04.many.frag # found chain 1dxrC in template set T0547 376 :EYLHDSIDH 1dxrC 98 :SEAKYPYVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71029 # 1yukA.376.1 read from T0547.t04.many.frag # found chain 1yukA in training set T0547 376 :EYLHDSIDH 1yukA 2 :ECTKFKVSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71030 1g1xC expands to /projects/compbio/data/pdb/1g1x.pdb.gz 1g1xC:# 1g1xC.376.56 read from T0547.t04.many.frag # adding 1g1xC to template set # found chain 1g1xC in template set Warning: unaligning (T0547)D383 (1g1xC)R64 because T (delta_L) conformation "forbidden" or filtered. T0547 376 :EYLHDSI 1g1xC 57 :GLSGKEQ T0547 384 :H 1g1xC 65 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=71032 # 1zb1A.376.172 read from T0547.t04.many.frag # found chain 1zb1A in template set T0547 376 :EYLHDSIDH 1zb1A 168 :DLQSENTRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=71033 # 1jm1A.376.8 read from T0547.t04.many.frag # found chain 1jm1A in training set Warning: unaligning (T0547)E376 (1jm1A)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1jm1A)K60 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1jm1A)A62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1jm1A)N63 because P (beta_P) conformation "forbidden" or filtered. T0547 377 :YLHD 1jm1A 56 :FPRY T0547 382 :I 1jm1A 61 :V Number of specific fragments extracted= 2 number of extra gaps= 3 total=71035 # 1n5uA.376.296 read from T0547.t04.many.frag # found chain 1n5uA in template set Warning: unaligning (T0547)E376 (1n5uA)E297 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1n5uA)D301 because L (left) conformation "forbidden" or filtered. T0547 377 :YLH 1n5uA 298 :MPA T0547 381 :SIDH 1n5uA 302 :LPSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=71037 # 1vkhA.376.191 read from T0547.t04.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)H384 (1vkhA)V188 because G (3-10) conformation "forbidden" or filtered. T0547 376 :EYLHDSID 1vkhA 180 :MYEEEPSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=71038 # 1t3gA.376.140 read from T0547.t04.many.frag # found chain 1t3gA in template set Warning: unaligning (T0547)H379 (1t3gA)K546 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1t3gA)L547 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1t3gA)N548 because L (left) conformation "forbidden" or filtered. T0547 376 :EYL 1t3gA 543 :KCN T0547 382 :IDH 1t3gA 549 :SKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=71040 # 1gpiA.376.236 read from T0547.t04.many.frag # found chain 1gpiA in training set T0547 376 :EYLHDSIDH 1gpiA 237 :DCARNTGLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=71041 # 1szwA.376.124 read from T0547.t04.many.frag # found chain 1szwA in template set T0547 376 :EYLHDSIDH 1szwA 103 :AFQLEGCQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71042 # 7odcA.377.347 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 377 :YLHDSIDHL 7odcA 348 :EKYYSSSIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=71043 # 1tl9A.377.204 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 377 :YLHDSIDHL 1tl9A 230 :APSDLYQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=71044 # 1owlA.377.166 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)D380 (1owlA)E170 because L (left) conformation "forbidden" or filtered. T0547 377 :YLH 1owlA 167 :TPT T0547 381 :SIDHL 1owlA 171 :LVDLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=71046 # 1knwA.377.329 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L385 (1knwA)A338 because Y (epsilon') conformation "forbidden" or filtered. T0547 377 :YLHDSIDH 1knwA 330 :APTVETVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=71047 # 1j7xA.377.83 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 377 :YLHDSIDHL 1j7xA 85 :IPEDEAMLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71048 # 1e0tA.377.319 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0547 379 :HDSIDHL 1e0tA 322 :LEAVSIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=71049 # 1ru3A.377.363 read from T0547.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)D383 (1ru3A)E370 because E (beta_S) conformation "forbidden" or filtered. T0547 377 :YLHDSI 1ru3A 364 :IEDGKV T0547 384 :HL 1ru3A 371 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=71051 # 2bkxA.377.149 read from T0547.t04.many.frag # found chain 2bkxA in training set T0547 377 :YLHDSIDHL 2bkxA 150 :SRTHVVTLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=71052 # 1puc.377.34 read from T0547.t04.many.frag # found chain 1puc in template set T0547 377 :YLHDSIDHL 1puc 36 :YEYRHVMLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71053 # 1okcA.377.48 read from T0547.t04.many.frag # found chain 1okcA in template set T0547 377 :YLHDSIDHL 1okcA 49 :QYKGIIDCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71054 # 1lb3A.377.83 read from T0547.t04.many.frag # found chain 1lb3A in training set Warning: unaligning (T0547)D383 (1lb3A)G94 because S (epsilon) conformation "forbidden" or filtered. T0547 377 :YLHDSI 1lb3A 88 :PSQDEW T0547 384 :HL 1lb3A 95 :KT Number of specific fragments extracted= 2 number of extra gaps= 1 total=71056 # 1dd9A.377.291 read from T0547.t04.many.frag # found chain 1dd9A in training set T0547 377 :YLHDSIDHL 1dd9A 387 :GRARLSTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71057 # 1e4fT.377.363 read from T0547.t04.many.frag # found chain 1e4fT in template set T0547 377 :YLHDSIDHL 1e4fT 364 :SDRPSIINA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71058 # 1d0cA.377.331 read from T0547.t04.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)D383 (1d0cA)N376 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1d0cA)I377 because G (3-10) conformation "forbidden" or filtered. T0547 377 :YLHDSI 1d0cA 370 :CDPHRY T0547 385 :L 1d0cA 378 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=71060 # 4dpvZ.377.78 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 377 :YLHDSIDHL 4dpvZ 79 :YRRVVVNNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=71061 # 1dxrC.377.98 read from T0547.t04.many.frag # found chain 1dxrC in template set T0547 377 :YLHDSIDHL 1dxrC 99 :EAKYPYVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71062 # 1yukA.377.2 read from T0547.t04.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)H384 (1yukA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 377 :YLHDSID 1yukA 3 :CTKFKVS T0547 385 :L 1yukA 11 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=71064 # 1ash.377.22 read from T0547.t04.many.frag # found chain 1ash in template set T0547 377 :YLHDSIDHL 1ash 22 :ARQDGIDLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=71065 # 1ijbA.377.183 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 377 :YLHDSIDHL 1ijbA 683 :LEQQRDEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71066 # 1lugA.377.208 read from T0547.t04.many.frag # found chain 1lugA in training set T0547 377 :YLHDSIDHL 1lugA 210 :VLKEPISVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71067 # 1m2oA.377.313 read from T0547.t04.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)D380 (1m2oA)D317 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1m2oA)H321 because G (3-10) conformation "forbidden" or filtered. T0547 377 :YLH 1m2oA 314 :IDS T0547 381 :SID 1m2oA 318 :HAQ T0547 385 :L 1m2oA 322 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=71070 # 1zb1A.377.173 read from T0547.t04.many.frag # found chain 1zb1A in template set T0547 377 :YLHDSIDHL 1zb1A 169 :LQSENTRFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71071 # 1azo.377.108 read from T0547.t04.many.frag # found chain 1azo in training set T0547 377 :YLHDSIDHL 1azo 106 :VTWETSHVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71072 # 1t06A.377.104 read from T0547.t04.many.frag # found chain 1t06A in template set T0547 377 :YLHDSIDHL 1t06A 105 :ESNIAQDVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71073 # 1szwA.377.125 read from T0547.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)D380 (1szwA)E107 because P (beta_P) conformation "forbidden" or filtered. T0547 377 :YLH 1szwA 104 :FQL T0547 381 :SIDHL 1szwA 108 :GCQVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=71075 # 1t98A.377.124 read from T0547.t04.many.frag # found chain 1t98A in template set T0547 377 :YLHDSIDHL 1t98A 125 :LSMQLSIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71076 # 1t3gA.377.141 read from T0547.t04.many.frag # found chain 1t3gA in template set Warning: unaligning (T0547)S381 (1t3gA)N548 because L (left) conformation "forbidden" or filtered. T0547 377 :YLHD 1t3gA 544 :CNKL T0547 382 :IDHL 1t3gA 549 :SKFW Number of specific fragments extracted= 2 number of extra gaps= 1 total=71078 # 1f9vA.377.255 read from T0547.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0547)L378 (1f9vA)V639 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H379 (1f9vA)G640 because S (epsilon) conformation "forbidden" or filtered. T0547 377 :Y 1f9vA 638 :V T0547 380 :DSIDHL 1f9vA 641 :DRLRET Number of specific fragments extracted= 2 number of extra gaps= 1 total=71080 # 1vkhA.377.192 read from T0547.t04.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)H384 (1vkhA)V188 because G (3-10) conformation "forbidden" or filtered. T0547 377 :YLHDSID 1vkhA 181 :YEEEPSR T0547 385 :L 1vkhA 189 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=71082 # 1usgA.377.228 read from T0547.t04.many.frag # found chain 1usgA in training set T0547 377 :YLHDSIDHL 1usgA 229 :GNASLSNIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71083 # 7odcA.378.348 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 378 :LHDSIDHLE 7odcA 349 :KYYSSSIWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71084 # 1tl9A.378.205 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 378 :LHDSIDHLE 1tl9A 231 :PSDLYQIIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71085 # 1owlA.378.167 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)D380 (1owlA)E170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1owlA)L171 because P (beta_P) conformation "forbidden" or filtered. T0547 378 :LH 1owlA 168 :PT T0547 382 :IDHLE 1owlA 172 :VDLSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=71087 # 1knwA.378.330 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L385 (1knwA)A338 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E386 (1knwA)G339 because P (beta_P) conformation "forbidden" or filtered. T0547 378 :LHDSIDH 1knwA 331 :PTVETVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=71088 # 1e0tA.378.320 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0547 379 :HDSIDHLE 1e0tA 322 :LEAVSIMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71089 # 2bkxA.378.150 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D380 (2bkxA)H153 because Y (epsilon') conformation "forbidden" or filtered. T0547 378 :LH 2bkxA 151 :RT T0547 381 :SIDHLE 2bkxA 154 :VVTLNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71091 # 1puc.378.35 read from T0547.t04.many.frag # found chain 1puc in template set T0547 378 :LHDSIDHLE 1puc 37 :EYRHVMLPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71092 # 1j7xA.378.84 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 378 :LHDSIDHLE 1j7xA 86 :PEDEAMLQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71093 # 1lugA.378.209 read from T0547.t04.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)D380 (1lugA)E213 because P (beta_P) conformation "forbidden" or filtered. T0547 378 :LH 1lugA 211 :LK T0547 381 :SIDHLE 1lugA 214 :PISVSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=71095 # 1dd9A.378.292 read from T0547.t04.many.frag # found chain 1dd9A in training set T0547 378 :LHDSIDHLE 1dd9A 388 :RARLSTLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71096 # 1okcA.378.49 read from T0547.t04.many.frag # found chain 1okcA in template set T0547 378 :LHDSIDHLE 1okcA 50 :YKGIIDCVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71097 # 1ru3A.378.364 read from T0547.t04.many.frag # found chain 1ru3A in template set T0547 378 :LHDSIDHLE 1ru3A 365 :EDGKVEVIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71098 # 1t06A.378.105 read from T0547.t04.many.frag # found chain 1t06A in template set T0547 378 :LHDSIDHLE 1t06A 106 :SNIAQDVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71099 # 1lb3A.378.84 read from T0547.t04.many.frag # found chain 1lb3A in training set T0547 378 :LHDSIDHLE 1lb3A 89 :SQDEWGKTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71100 # 1dxrC.378.99 read from T0547.t04.many.frag # found chain 1dxrC in template set T0547 378 :LHDSIDHLE 1dxrC 100 :AKYPYVVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71101 # 1usgA.378.229 read from T0547.t04.many.frag # found chain 1usgA in training set Warning: unaligning (T0547)E386 (1usgA)G238 because S (epsilon) conformation "forbidden" or filtered. T0547 378 :LHDSIDHL 1usgA 230 :NASLSNIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=71102 # 1d0cA.378.332 read from T0547.t04.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)S381 (1d0cA)R374 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1d0cA)N376 because L (left) conformation "forbidden" or filtered. T0547 378 :LHD 1d0cA 371 :DPH T0547 382 :I 1d0cA 375 :Y T0547 384 :HLE 1d0cA 377 :ILE Number of specific fragments extracted= 3 number of extra gaps= 2 total=71105 # 1ijbA.378.184 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 378 :LHDSIDHLE 1ijbA 684 :EQQRDEIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71106 # 4dpvZ.378.79 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 378 :LHDSIDHLE 4dpvZ 80 :RRVVVNNMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71107 # 1ash.378.23 read from T0547.t04.many.frag # found chain 1ash in template set T0547 378 :LHDSIDHLE 1ash 23 :RQDGIDLYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71108 # 1e4fT.378.364 read from T0547.t04.many.frag # found chain 1e4fT in template set T0547 378 :LHDSIDHLE 1e4fT 365 :DRPSIINAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71109 # 1jl0A.378.122 read from T0547.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)D380 (1jl0A)Y125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1jl0A)P126 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1jl0A)N129 because Y (epsilon') conformation "forbidden" or filtered. T0547 378 :LH 1jl0A 123 :QG T0547 382 :ID 1jl0A 127 :HR T0547 385 :LE 1jl0A 130 :FQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=71112 # 1yukA.378.3 read from T0547.t04.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)S381 (1yukA)K7 because L (left) conformation "forbidden" or filtered. T0547 378 :LHD 1yukA 4 :TKF T0547 382 :IDHLE 1yukA 8 :VSSCR Number of specific fragments extracted= 2 number of extra gaps= 1 total=71114 # 1m2oA.378.314 read from T0547.t04.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)H379 (1m2oA)S316 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1m2oA)D317 because L (left) conformation "forbidden" or filtered. T0547 378 :L 1m2oA 315 :D T0547 381 :SIDHLE 1m2oA 318 :HAQHYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=71116 # 1yvrA.378.293 read from T0547.t04.many.frag # found chain 1yvrA in template set Warning: unaligning (T0547)H379 (1yvrA)A295 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1yvrA)A297 because T (delta_L) conformation "forbidden" or filtered. T0547 378 :L 1yvrA 294 :L T0547 380 :D 1yvrA 296 :P T0547 382 :IDHLE 1yvrA 298 :SSEVS Number of specific fragments extracted= 3 number of extra gaps= 2 total=71119 # 1t98A.378.125 read from T0547.t04.many.frag # found chain 1t98A in template set T0547 378 :LHDSIDHLE 1t98A 126 :SMQLSIVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71120 # 1k87A.378.580 read from T0547.t04.many.frag # found chain 1k87A in template set T0547 378 :LHDSIDHLE 1k87A 581 :VADPVTAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71121 1eerA expands to /projects/compbio/data/pdb/1eer.pdb.gz 1eerA:# 1eerA.378.130 read from T0547.t04.many.frag # adding 1eerA to template set # found chain 1eerA in template set Warning: unaligning (T0547)L378 (1eerA)R131 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1eerA)I133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1eerA)T134 because Y (epsilon') conformation "forbidden" or filtered. T0547 379 :H 1eerA 132 :T T0547 382 :IDHLE 1eerA 135 :ADTFR Number of specific fragments extracted= 2 number of extra gaps= 2 total=71123 # 1wraA.378.205 read from T0547.t04.many.frag # found chain 1wraA in template set T0547 378 :LHDSIDHLE 1wraA 232 :VHGAEDKYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71124 # 1umgA.378.181 read from T0547.t04.many.frag # found chain 1umgA in training set Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1umgA)Q185 Warning: unaligning (T0547)H379 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1umgA)Q185 T0547 380 :DSIDHLE 1umgA 186 :EIYDLLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=71125 # 7odcA.379.349 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D380 (7odcA)Y351 because E (beta_S) conformation "forbidden" or filtered. T0547 379 :H 7odcA 350 :Y T0547 381 :SIDHLES 7odcA 352 :SSSIWGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=71127 # 1knwA.379.331 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L385 (1knwA)A338 because Y (epsilon') conformation "forbidden" or filtered. T0547 379 :HDSIDH 1knwA 332 :TVETVV T0547 386 :ES 1knwA 339 :GP Number of specific fragments extracted= 2 number of extra gaps= 1 total=71129 # 1tl9A.379.206 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 379 :HDSIDHLES 1tl9A 232 :SDLYQIILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71130 # 1owlA.379.168 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 379 :HDSIDHLES 1owlA 169 :TELVDLSPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71131 # 2bkxA.379.151 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D380 (2bkxA)H153 because Y (epsilon') conformation "forbidden" or filtered. T0547 379 :H 2bkxA 152 :T T0547 381 :SIDHLES 2bkxA 154 :VVTLNEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=71133 # 1e0tA.379.321 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 379 :HDSIDHLES 1e0tA 322 :LEAVSIMAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=71134 # 1puc.379.36 read from T0547.t04.many.frag # found chain 1puc in template set Warning: unaligning (T0547)D380 (1puc)R39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1puc)M42 because E (beta_S) conformation "forbidden" or filtered. T0547 379 :H 1puc 38 :Y T0547 381 :SI 1puc 40 :HV T0547 384 :HLES 1puc 43 :LPKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=71137 # 1t06A.379.106 read from T0547.t04.many.frag # found chain 1t06A in template set T0547 379 :HDSIDHLES 1t06A 107 :NIAQDVADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71138 # 4dpvZ.379.80 read from T0547.t04.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)D380 (4dpvZ)V82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (4dpvZ)N85 because D (zeta) conformation "forbidden" or filtered. T0547 379 :H 4dpvZ 81 :R T0547 381 :SI 4dpvZ 83 :VV T0547 384 :HLES 4dpvZ 86 :NMDK Number of specific fragments extracted= 3 number of extra gaps= 2 total=71141 # 1yukA.379.4 read from T0547.t04.many.frag # found chain 1yukA in training set T0547 379 :HDSIDHLES 1yukA 5 :KFKVSSCRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71142 # 1usgA.379.230 read from T0547.t04.many.frag # found chain 1usgA in training set T0547 379 :HDSIDHLES 1usgA 231 :ASLSNIAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71143 # 1lb3A.379.85 read from T0547.t04.many.frag # found chain 1lb3A in training set Warning: unaligning (T0547)H384 (1lb3A)K95 because P (beta_P) conformation "forbidden" or filtered. T0547 379 :HDSID 1lb3A 90 :QDEWG T0547 385 :LES 1lb3A 96 :TQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71145 # 1ijbA.379.185 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 379 :HDSIDHLES 1ijbA 685 :QQRDEIVSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=71146 # 1dd9A.379.293 read from T0547.t04.many.frag # found chain 1dd9A in training set T0547 379 :HDSIDHLES 1dd9A 389 :ARLSTLALP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71147 # 1d0cA.379.333 read from T0547.t04.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)S381 (1d0cA)R374 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1d0cA)N376 because L (left) conformation "forbidden" or filtered. T0547 379 :HD 1d0cA 372 :PH T0547 382 :I 1d0cA 375 :Y T0547 384 :HLES 1d0cA 377 :ILED Number of specific fragments extracted= 3 number of extra gaps= 2 total=71150 # 1dxrC.379.100 read from T0547.t04.many.frag # found chain 1dxrC in template set T0547 379 :HDSIDHLES 1dxrC 101 :KYPYVVARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71151 # 1yvrA.379.294 read from T0547.t04.many.frag # found chain 1yvrA in template set T0547 379 :HDSIDHLES 1yvrA 295 :APASSEVSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71152 # 1jl0A.379.123 read from T0547.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)S381 (1jl0A)P126 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1jl0A)N129 because Y (epsilon') conformation "forbidden" or filtered. T0547 379 :HD 1jl0A 124 :GY T0547 382 :ID 1jl0A 127 :HR T0547 385 :LES 1jl0A 130 :FQE Number of specific fragments extracted= 3 number of extra gaps= 2 total=71155 # 1m2oA.379.315 read from T0547.t04.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)H379 (1m2oA)S316 because G (3-10) conformation "forbidden" or filtered. T0547 380 :DSIDHLES 1m2oA 317 :DHAQHYKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=71156 # 1y0zA.379.275 read from T0547.t04.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)S381 (1y0zA)P278 because P (beta_P) conformation "forbidden" or filtered. T0547 379 :HD 1y0zA 276 :PL T0547 382 :IDHLES 1y0zA 279 :ADIVHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=71158 # 1lugA.379.210 read from T0547.t04.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)D383 (1lugA)S216 because P (beta_P) conformation "forbidden" or filtered. T0547 379 :HDSI 1lugA 212 :KEPI T0547 384 :HLES 1lugA 217 :VSSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71160 # 1kcfA.379.188 read from T0547.t04.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)H379 (1kcfA)K189 because P (beta_P) conformation "forbidden" or filtered. T0547 380 :DSIDHLES 1kcfA 190 :SRVQMVKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=71161 # 1ash.379.24 read from T0547.t04.many.frag # found chain 1ash in template set T0547 379 :HDSIDHLES 1ash 24 :QDGIDLYKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=71162 # 1e4fT.379.365 read from T0547.t04.many.frag # found chain 1e4fT in template set Warning: unaligning (T0547)H379 (1e4fT)R366 because P (beta_P) conformation "forbidden" or filtered. T0547 380 :DSIDHLES 1e4fT 367 :PSIINADE Number of specific fragments extracted= 1 number of extra gaps= 1 total=71163 # 1ru3A.379.365 read from T0547.t04.many.frag # found chain 1ru3A in template set T0547 379 :HDSIDHLES 1ru3A 366 :DGKVEVIGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71164 # 1t98A.379.126 read from T0547.t04.many.frag # found chain 1t98A in template set T0547 379 :HDSIDHLES 1t98A 127 :MQLSIVAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71165 # 1j7xA.379.85 read from T0547.t04.many.frag # found chain 1j7xA in training set T0547 379 :HDSIDHLES 1j7xA 87 :EDEAMLQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71166 # 1v4sA.379.350 read from T0547.t04.many.frag # found chain 1v4sA in template set T0547 379 :HDSIDHLES 1v4sA 361 :TTDCDIVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71167 # 1r8gA.379.194 read from T0547.t04.many.frag # found chain 1r8gA in template set Warning: unaligning (T0547)D380 (1r8gA)P196 because P (beta_P) conformation "forbidden" or filtered. T0547 379 :H 1r8gA 195 :M T0547 381 :SIDHLES 1r8gA 197 :WVSNWQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=71169 # 1yhtA.379.288 read from T0547.t04.many.frag # found chain 1yhtA in template set T0547 379 :HDSIDHLES 1yhtA 289 :QDAAFAAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71170 # 7odcA.380.350 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 380 :DSIDHLESI 7odcA 351 :YSSSIWGPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=71171 # 1knwA.380.332 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)D380 (1knwA)V333 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S387 (1knwA)P340 because G (3-10) conformation "forbidden" or filtered. T0547 381 :SIDHLE 1knwA 334 :ETVVAG T0547 388 :I 1knwA 341 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=71173 # 2bkxA.380.152 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D380 (2bkxA)H153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (2bkxA)L157 because P (beta_P) conformation "forbidden" or filtered. T0547 381 :SID 2bkxA 154 :VVT T0547 385 :LESI 2bkxA 158 :NEQT Number of specific fragments extracted= 2 number of extra gaps= 2 total=71175 # 1owlA.380.169 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)D380 (1owlA)E170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1owlA)L171 because P (beta_P) conformation "forbidden" or filtered. T0547 382 :IDHLESI 1owlA 172 :VDLSPEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=71176 # 1tl9A.380.207 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 380 :DSIDHLESI 1tl9A 233 :DLYQIILKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71177 # 1e0tA.380.322 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 380 :DSIDHLESI 1e0tA 323 :EAVSIMATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71178 # 1puc.380.37 read from T0547.t04.many.frag # found chain 1puc in template set Warning: unaligning (T0547)D380 (1puc)R39 because Y (epsilon') conformation "forbidden" or filtered. T0547 381 :SIDHLESI 1puc 40 :HVMLPKAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=71179 # 1yukA.380.5 read from T0547.t04.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)H384 (1yukA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 380 :DSID 1yukA 6 :FKVS T0547 385 :LESI 1yukA 11 :CREC Number of specific fragments extracted= 2 number of extra gaps= 1 total=71181 # 1t06A.380.107 read from T0547.t04.many.frag # found chain 1t06A in template set T0547 380 :DSIDHLESI 1t06A 108 :IAQDVADKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=71182 # 4dpvZ.380.81 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 380 :DSIDHLESI 4dpvZ 82 :VVVNNMDKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=71183 # 1kcfA.380.189 read from T0547.t04.many.frag # found chain 1kcfA in template set T0547 380 :DSIDHLESI 1kcfA 190 :SRVQMVKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71184 # 1lb3A.380.86 read from T0547.t04.many.frag # found chain 1lb3A in training set Warning: unaligning (T0547)H384 (1lb3A)K95 because P (beta_P) conformation "forbidden" or filtered. T0547 380 :DSID 1lb3A 91 :DEWG T0547 385 :LESI 1lb3A 96 :TQEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=71186 # 1usgA.380.231 read from T0547.t04.many.frag # found chain 1usgA in training set Warning: unaligning (T0547)E386 (1usgA)G238 because S (epsilon) conformation "forbidden" or filtered. T0547 380 :DSIDHL 1usgA 232 :SLSNIA T0547 387 :SI 1usgA 239 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=71188 # 1m2oA.380.316 read from T0547.t04.many.frag # found chain 1m2oA in template set T0547 380 :DSIDHLESI 1m2oA 317 :DHAQHYKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71189 # 1ijbA.380.186 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 380 :DSIDHLESI 1ijbA 686 :QRDEIVSYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71190 # 1jl0A.380.124 read from T0547.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)S381 (1jl0A)P126 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)I382 (1jl0A)H127 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1jl0A)N129 because Y (epsilon') conformation "forbidden" or filtered. T0547 380 :D 1jl0A 125 :Y T0547 383 :D 1jl0A 128 :R T0547 385 :LESI 1jl0A 130 :FQEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=71193 # 1yvrA.380.295 read from T0547.t04.many.frag # found chain 1yvrA in template set T0547 380 :DSIDHLESI 1yvrA 296 :PASSEVSSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71194 # 1r8gA.380.195 read from T0547.t04.many.frag # found chain 1r8gA in template set Warning: unaligning (T0547)H384 (1r8gA)N200 because Y (epsilon') conformation "forbidden" or filtered. T0547 380 :DSID 1r8gA 196 :PWVS T0547 385 :LESI 1r8gA 201 :WQQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=71196 # 1ei6A.380.315 read from T0547.t04.many.frag # found chain 1ei6A in template set Warning: unaligning (T0547)S381 (1ei6A)A318 because Y (epsilon') conformation "forbidden" or filtered. T0547 380 :D 1ei6A 317 :E T0547 382 :IDHLESI 1ei6A 319 :VLTRSQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=71198 # 1d0cA.380.334 read from T0547.t04.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)S381 (1d0cA)R374 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1d0cA)N376 because L (left) conformation "forbidden" or filtered. T0547 380 :D 1d0cA 373 :H T0547 382 :I 1d0cA 375 :Y T0547 384 :HLESI 1d0cA 377 :ILEDV Number of specific fragments extracted= 3 number of extra gaps= 2 total=71201 # 1yhtA.380.289 read from T0547.t04.many.frag # found chain 1yhtA in template set T0547 380 :DSIDHLESI 1yhtA 290 :DAAFAAKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71202 # 1v5vA.380.225 read from T0547.t04.many.frag # found chain 1v5vA in training set T0547 380 :DSIDHLESI 1v5vA 226 :KALHVWERI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71203 # 1y0zA.380.276 read from T0547.t04.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)D380 (1y0zA)L277 because P (beta_P) conformation "forbidden" or filtered. T0547 381 :SIDHLESI 1y0zA 278 :PADIVHDC Number of specific fragments extracted= 1 number of extra gaps= 1 total=71204 # 1dd9A.380.294 read from T0547.t04.many.frag # found chain 1dd9A in training set T0547 380 :DSIDHLESI 1dd9A 390 :RLSTLALPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71205 # 1lugA.380.211 read from T0547.t04.many.frag # found chain 1lugA in training set T0547 380 :DSIDHLESI 1lugA 213 :EPISVSSEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71206 # 1ldjA.380.600 read from T0547.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0547)D380 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ldjA)E617 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ldjA)D618 Warning: unaligning (T0547)I382 because of BadResidue code CHAIN_BREAK_BEFORE+HIGH_B_FACTOR at template residue (1ldjA)A619 T0547 383 :DHLESI 1ldjA 620 :YTVQQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=71207 # 1ho8A.380.391 read from T0547.t04.many.frag # found chain 1ho8A in template set Warning: unaligning (T0547)S381 (1ho8A)N391 because L (left) conformation "forbidden" or filtered. T0547 380 :D 1ho8A 390 :D T0547 382 :IDHLESI 1ho8A 392 :YKIFRQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=71209 # 1ash.380.25 read from T0547.t04.many.frag # found chain 1ash in template set T0547 380 :DSIDHLESI 1ash 25 :DGIDLYKHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=71210 # 1bc5A.380.178 read from T0547.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D380 (1bc5A)G194 because T (delta_L) conformation "forbidden" or filtered. T0547 381 :SIDHLESI 1bc5A 195 :LVRVRQEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=71211 # 1dxrC.380.101 read from T0547.t04.many.frag # found chain 1dxrC in template set T0547 380 :DSIDHLESI 1dxrC 102 :YPYVVARRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=71212 # 7odcA.381.351 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D383 (7odcA)S354 because E (beta_S) conformation "forbidden" or filtered. T0547 381 :SI 7odcA 352 :SS T0547 384 :HLESIL 7odcA 355 :IWGPTC Number of specific fragments extracted= 2 number of extra gaps= 1 total=71214 # 1knwA.381.333 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)S381 (1knwA)E334 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1knwA)V336 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L385 (1knwA)A338 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S387 (1knwA)P340 because G (3-10) conformation "forbidden" or filtered. T0547 382 :I 1knwA 335 :T T0547 384 :H 1knwA 337 :V T0547 386 :E 1knwA 339 :G T0547 388 :IL 1knwA 341 :LC Number of specific fragments extracted= 4 number of extra gaps= 4 total=71218 # 2bkxA.381.153 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D383 (2bkxA)T156 because P (beta_P) conformation "forbidden" or filtered. T0547 381 :SI 2bkxA 154 :VV T0547 384 :HLESIL 2bkxA 157 :LNEQTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=71220 # 1owlA.381.170 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 381 :SIDHLESIL 1owlA 171 :LVDLSPEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71221 # 1e0tA.381.323 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 T0547 381 :SIDHLESI 1e0tA 324 :AVSIMATI Number of specific fragments extracted= 1 number of extra gaps= 1 total=71222 # 1puc.381.38 read from T0547.t04.many.frag # found chain 1puc in template set T0547 381 :SIDHLESIL 1puc 40 :HVMLPKAML Number of specific fragments extracted= 1 number of extra gaps= 0 total=71223 # 1t06A.381.108 read from T0547.t04.many.frag # found chain 1t06A in template set T0547 381 :SIDHLESIL 1t06A 109 :AQDVADKWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71224 # 1kcfA.381.190 read from T0547.t04.many.frag # found chain 1kcfA in template set T0547 381 :SIDHLESIL 1kcfA 191 :RVQMVKELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71225 # 1tl9A.381.208 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 381 :SIDHLESIL 1tl9A 234 :LYQIILKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71226 # 1ijbA.381.187 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 381 :SIDHLESIL 1ijbA 687 :RDEIVSYLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=71227 # 1m2oA.381.317 read from T0547.t04.many.frag # found chain 1m2oA in template set T0547 381 :SIDHLESIL 1m2oA 318 :HAQHYKKAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=71228 # 1yukA.381.6 read from T0547.t04.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)S381 (1yukA)K7 because L (left) conformation "forbidden" or filtered. T0547 382 :IDHLESIL 1yukA 8 :VSSCRECI Number of specific fragments extracted= 1 number of extra gaps= 1 total=71229 # 1usgA.381.232 read from T0547.t04.many.frag # found chain 1usgA in training set Warning: unaligning (T0547)E386 (1usgA)G238 because S (epsilon) conformation "forbidden" or filtered. T0547 381 :SIDHL 1usgA 233 :LSNIA T0547 387 :SIL 1usgA 239 :DAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=71231 # 4dpvZ.381.82 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 381 :SIDHLESIL 4dpvZ 83 :VVNNMDKTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71232 1wmgA expands to /projects/compbio/data/pdb/1wmg.pdb.gz 1wmgA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wmgA.381.12 read from T0547.t04.many.frag # adding 1wmgA to template set # found chain 1wmgA in template set T0547 381 :SIDHLESIL 1wmgA 859 :PLSIRQKIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=71233 # 1jl0A.381.125 read from T0547.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)S381 (1jl0A)P126 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1jl0A)N129 because Y (epsilon') conformation "forbidden" or filtered. T0547 382 :ID 1jl0A 127 :HR T0547 385 :LESIL 1jl0A 130 :FQEEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=71235 # 1yvrA.381.296 read from T0547.t04.many.frag # found chain 1yvrA in template set Warning: unaligning (T0547)S381 (1yvrA)A297 because T (delta_L) conformation "forbidden" or filtered. T0547 382 :IDHLESIL 1yvrA 298 :SSEVSSVC Number of specific fragments extracted= 1 number of extra gaps= 1 total=71236 # 1ei6A.381.316 read from T0547.t04.many.frag # found chain 1ei6A in template set Warning: unaligning (T0547)S381 (1ei6A)A318 because Y (epsilon') conformation "forbidden" or filtered. T0547 382 :IDHLESIL 1ei6A 319 :VLTRSQAC Number of specific fragments extracted= 1 number of extra gaps= 1 total=71237 # 1v5vA.381.226 read from T0547.t04.many.frag # found chain 1v5vA in training set T0547 381 :SIDHLESIL 1v5vA 227 :ALHVWERIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71238 # 1y0zA.381.277 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 381 :SIDHLESIL 1y0zA 278 :PADIVHDCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71239 # 1lb3A.381.87 read from T0547.t04.many.frag # found chain 1lb3A in training set T0547 381 :SIDHLESIL 1lb3A 92 :EWGKTQEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=71240 # 1yhtA.381.290 read from T0547.t04.many.frag # found chain 1yhtA in template set T0547 381 :SIDHLESIL 1yhtA 291 :AAFAAKDVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71241 # 1lugA.381.212 read from T0547.t04.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)S381 (1lugA)P214 because P (beta_P) conformation "forbidden" or filtered. T0547 382 :IDHLESIL 1lugA 215 :ISVSSEQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=71242 # 1r8gA.381.196 read from T0547.t04.many.frag # found chain 1r8gA in template set Warning: unaligning (T0547)H384 (1r8gA)N200 because Y (epsilon') conformation "forbidden" or filtered. T0547 381 :SID 1r8gA 197 :WVS T0547 385 :LESIL 1r8gA 201 :WQQFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71244 # 1ldjA.381.601 read from T0547.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ldjA)D618 Warning: unaligning (T0547)I382 because of BadResidue code CHAIN_BREAK_BEFORE+HIGH_B_FACTOR at template residue (1ldjA)A619 T0547 383 :DHLESIL 1ldjA 620 :YTVQQLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=71245 # 1bc5A.381.179 read from T0547.t04.many.frag # found chain 1bc5A in template set T0547 381 :SIDHLESIL 1bc5A 195 :LVRVRQELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71246 # 1d0cA.381.335 read from T0547.t04.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)S381 (1d0cA)R374 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1d0cA)N376 because L (left) conformation "forbidden" or filtered. T0547 382 :I 1d0cA 375 :Y T0547 384 :HLESIL 1d0cA 377 :ILEDVA Number of specific fragments extracted= 2 number of extra gaps= 2 total=71248 # 1qg8A.381.163 read from T0547.t04.many.frag # found chain 1qg8A in training set T0547 381 :SIDHLESIL 1qg8A 165 :RYSVLEKVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71249 # 1ash.381.26 read from T0547.t04.many.frag # found chain 1ash in template set T0547 381 :SIDHLESIL 1ash 26 :GIDLYKHMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=71250 # 1ho8A.381.392 read from T0547.t04.many.frag # found chain 1ho8A in template set Warning: unaligning (T0547)S381 (1ho8A)N391 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I382 (1ho8A)Y392 because L (left) conformation "forbidden" or filtered. T0547 383 :DHLESIL 1ho8A 393 :KIFRQLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=71251 # 7odcA.382.352 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 382 :IDHLESILT 7odcA 353 :SSIWGPTCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71252 # 1knwA.382.334 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 382 :IDHLESILT 1knwA 335 :TVVAGPLCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71253 # 2bkxA.382.154 read from T0547.t04.many.frag # found chain 2bkxA in training set T0547 382 :IDHLESILT 2bkxA 155 :VTLNEQTRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71254 # 1owlA.382.171 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 382 :IDHLESILT 1owlA 172 :VDLSPEQLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=71255 # 1kcfA.382.191 read from T0547.t04.many.frag # found chain 1kcfA in template set T0547 382 :IDHLESILT 1kcfA 192 :VQMVKELID Number of specific fragments extracted= 1 number of extra gaps= 0 total=71256 # 1e0tA.382.324 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1e0tA)E333 T0547 382 :IDHLESI 1e0tA 325 :VSIMATI Number of specific fragments extracted= 1 number of extra gaps= 1 total=71257 # 1wmgA.382.13 read from T0547.t04.many.frag # found chain 1wmgA in template set T0547 382 :IDHLESILT 1wmgA 860 :LSIRQKICS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71258 # 1m2oA.382.318 read from T0547.t04.many.frag # found chain 1m2oA in template set Warning: unaligning (T0547)H384 (1m2oA)H321 because G (3-10) conformation "forbidden" or filtered. T0547 382 :ID 1m2oA 319 :AQ T0547 385 :LESILT 1m2oA 322 :YKKACK Number of specific fragments extracted= 2 number of extra gaps= 1 total=71260 # 1yukA.382.7 read from T0547.t04.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)H384 (1yukA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 382 :ID 1yukA 8 :VS T0547 385 :LESILT 1yukA 11 :CRECIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71262 # 1jl0A.382.126 read from T0547.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)H384 (1jl0A)N129 because Y (epsilon') conformation "forbidden" or filtered. T0547 382 :ID 1jl0A 127 :HR T0547 385 :LESILT 1jl0A 130 :FQEEIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71264 # 1y0zA.382.278 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 382 :IDHLESILT 1y0zA 279 :ADIVHDCLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71265 # 1ijbA.382.188 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 382 :IDHLESILT 1ijbA 688 :DEIVSYLCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71266 # 1t06A.382.109 read from T0547.t04.many.frag # found chain 1t06A in template set T0547 382 :IDHLESILT 1t06A 110 :QDVADKWIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71267 # 1puc.382.39 read from T0547.t04.many.frag # found chain 1puc in template set T0547 382 :IDHLESILT 1puc 41 :VMLPKAMLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71268 # 1v5vA.382.227 read from T0547.t04.many.frag # found chain 1v5vA in training set T0547 382 :IDHLESILT 1v5vA 228 :LHVWERILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71269 # 1tl9A.382.209 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 382 :IDHLESILT 1tl9A 235 :YQIILKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71270 # 1usgA.382.233 read from T0547.t04.many.frag # found chain 1usgA in training set Warning: unaligning (T0547)E386 (1usgA)G238 because S (epsilon) conformation "forbidden" or filtered. T0547 382 :IDHL 1usgA 234 :SNIA T0547 387 :SILT 1usgA 239 :DAAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71272 # 1yvrA.382.297 read from T0547.t04.many.frag # found chain 1yvrA in template set T0547 382 :IDHLESILT 1yvrA 298 :SSEVSSVCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71273 # 1qg8A.382.164 read from T0547.t04.many.frag # found chain 1qg8A in training set T0547 382 :IDHLESILT 1qg8A 166 :YSVLEKVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71274 # 1bc5A.382.180 read from T0547.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D383 (1bc5A)R197 because E (beta_S) conformation "forbidden" or filtered. T0547 382 :I 1bc5A 196 :V T0547 384 :HLESILT 1bc5A 198 :VRQELAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=71276 # 1yhtA.382.291 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1yhtA)N301 T0547 382 :IDHLESIL 1yhtA 292 :AFAAKDVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=71277 # 4dpvZ.382.83 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 382 :IDHLESILT 4dpvZ 84 :VNNMDKTAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71278 # 1ei6A.382.317 read from T0547.t04.many.frag # found chain 1ei6A in template set T0547 382 :IDHLESILT 1ei6A 319 :VLTRSQACQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71279 # 1ho8A.382.393 read from T0547.t04.many.frag # found chain 1ho8A in template set Warning: unaligning (T0547)I382 (1ho8A)Y392 because L (left) conformation "forbidden" or filtered. T0547 383 :DHLESILT 1ho8A 393 :KIFRQLIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=71280 # 1r8gA.382.197 read from T0547.t04.many.frag # found chain 1r8gA in template set Warning: unaligning (T0547)H384 (1r8gA)N200 because Y (epsilon') conformation "forbidden" or filtered. T0547 382 :ID 1r8gA 198 :VS T0547 385 :LESILT 1r8gA 201 :WQQFEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=71282 # 1lb3A.382.88 read from T0547.t04.many.frag # found chain 1lb3A in training set T0547 382 :IDHLESILT 1lb3A 93 :WGKTQEAME Number of specific fragments extracted= 1 number of extra gaps= 0 total=71283 # 1atg.382.142 read from T0547.t04.many.frag # found chain 1atg in training set T0547 382 :IDHLESILT 1atg 144 :ANSVGQAHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71284 # 1lugA.382.213 read from T0547.t04.many.frag # found chain 1lugA in training set T0547 382 :IDHLESILT 1lugA 215 :ISVSSEQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71285 # 1uylA.382.19 read from T0547.t04.many.frag # found chain 1uylA in training set Warning: unaligning (T0547)D383 (1uylA)A21 because P (beta_P) conformation "forbidden" or filtered. T0547 382 :I 1uylA 20 :F T0547 384 :HLESILT 1uylA 22 :FQAEIAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=71287 # 1xw8A.382.224 read from T0547.t04.many.frag # found chain 1xw8A in template set T0547 382 :IDHLESILT 1xw8A 225 :LAFARRLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71288 # 1knwA.383.335 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 383 :DHLESILTL 1knwA 336 :VVAGPLCES Number of specific fragments extracted= 1 number of extra gaps= 0 total=71289 # 7odcA.383.353 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 383 :DHLESILTL 7odcA 354 :SIWGPTCDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71290 # 2bkxA.383.155 read from T0547.t04.many.frag # found chain 2bkxA in training set T0547 383 :DHLESILTL 2bkxA 156 :TLNEQTRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71291 # 1kcfA.383.192 read from T0547.t04.many.frag # found chain 1kcfA in template set T0547 383 :DHLESILTL 1kcfA 193 :QMVKELIDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71292 # 1owlA.383.172 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 383 :DHLESILTL 1owlA 173 :DLSPEQLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71293 # 1wmgA.383.14 read from T0547.t04.many.frag # found chain 1wmgA in template set T0547 383 :DHLESILTL 1wmgA 861 :SIRQKICSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71294 # 1m2oA.383.319 read from T0547.t04.many.frag # found chain 1m2oA in template set T0547 383 :DHLESILTL 1m2oA 320 :QHYKKACKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=71295 # 1e0tA.383.325 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1e0tA)E333 T0547 383 :DHLESI 1e0tA 326 :SIMATI T0547 391 :L 1e0tA 334 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=71297 # 1y0zA.383.279 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 383 :DHLESILTL 1y0zA 280 :DIVHDCLRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71298 # 1jl0A.383.127 read from T0547.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)H384 (1jl0A)N129 because Y (epsilon') conformation "forbidden" or filtered. T0547 383 :D 1jl0A 128 :R T0547 385 :LESILTL 1jl0A 130 :FQEEIEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=71300 # 1ijbA.383.189 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 383 :DHLESILTL 1ijbA 689 :EIVSYLCDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71301 # 1v5vA.383.228 read from T0547.t04.many.frag # found chain 1v5vA in training set T0547 383 :DHLESILTL 1v5vA 229 :HVWERILEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71302 # 1yukA.383.8 read from T0547.t04.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)H384 (1yukA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 383 :D 1yukA 9 :S T0547 385 :LESILTL 1yukA 11 :CRECIES Number of specific fragments extracted= 2 number of extra gaps= 1 total=71304 # 1puc.383.40 read from T0547.t04.many.frag # found chain 1puc in template set Warning: unaligning (T0547)H384 (1puc)L43 because P (beta_P) conformation "forbidden" or filtered. T0547 383 :D 1puc 42 :M T0547 385 :LESILTL 1puc 44 :PKAMLKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=71306 # 1yhtA.383.292 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1yhtA)N301 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1yhtA)N301 T0547 383 :DHLESIL 1yhtA 293 :FAAKDVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=71307 # 1bc5A.383.181 read from T0547.t04.many.frag # found chain 1bc5A in template set T0547 383 :DHLESILTL 1bc5A 197 :RVRQELANY Number of specific fragments extracted= 1 number of extra gaps= 0 total=71308 # 1t06A.383.110 read from T0547.t04.many.frag # found chain 1t06A in template set T0547 383 :DHLESILTL 1t06A 111 :DVADKWIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71309 # 1fcqA.383.209 read from T0547.t04.many.frag # found chain 1fcqA in training set T0547 383 :DHLESILTL 1fcqA 210 :DKMSWLFES Number of specific fragments extracted= 1 number of extra gaps= 0 total=71310 # 1qg8A.383.165 read from T0547.t04.many.frag # found chain 1qg8A in training set T0547 383 :DHLESILTL 1qg8A 167 :SVLEKVKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71311 # 1yvrA.383.298 read from T0547.t04.many.frag # found chain 1yvrA in template set T0547 383 :DHLESILTL 1yvrA 299 :SEVSSVCER Number of specific fragments extracted= 1 number of extra gaps= 0 total=71312 # 1uylA.383.20 read from T0547.t04.many.frag # found chain 1uylA in training set T0547 383 :DHLESILTL 1uylA 21 :AFQAEIAQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71313 # 1usgA.383.234 read from T0547.t04.many.frag # found chain 1usgA in training set T0547 383 :DHLESILTL 1usgA 235 :NIAGDAAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71314 # 1xw8A.383.225 read from T0547.t04.many.frag # found chain 1xw8A in template set T0547 383 :DHLESILTL 1xw8A 226 :AFARRLRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71315 # 1ho8A.383.394 read from T0547.t04.many.frag # found chain 1ho8A in template set T0547 383 :DHLESILTL 1ho8A 393 :KIFRQLIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71316 # 1ei6A.383.318 read from T0547.t04.many.frag # found chain 1ei6A in template set Warning: unaligning (T0547)H384 (1ei6A)T321 because P (beta_P) conformation "forbidden" or filtered. T0547 383 :D 1ei6A 320 :L T0547 385 :LESILTL 1ei6A 322 :RSQACQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=71318 1zx4A expands to /projects/compbio/data/pdb/1zx4.pdb.gz 1zx4A:# 1zx4A.383.66 read from T0547.t04.many.frag # adding 1zx4A to template set # found chain 1zx4A in template set T0547 383 :DHLESILTL 1zx4A 208 :SDYKTLCAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71319 # 1a6m.383.33 read from T0547.t04.many.frag # found chain 1a6m in training set T0547 383 :DHLESILTL 1a6m 34 :KSHPETLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71320 # 4dpvZ.383.84 read from T0547.t04.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)L391 (4dpvZ)N93 because L (left) conformation "forbidden" or filtered. T0547 383 :DHLESILT 4dpvZ 85 :NNMDKTAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=71321 # 2a2cA.383.189 read from T0547.t04.many.frag # found chain 2a2cA in training set T0547 383 :DHLESILTL 2a2cA 170 :ELAEICAKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71322 # 1tl9A.383.210 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 383 :DHLESILTL 1tl9A 236 :QIILKALER Number of specific fragments extracted= 1 number of extra gaps= 0 total=71323 # 1knwA.384.336 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L385 (1knwA)A338 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E386 (1knwA)G339 because P (beta_P) conformation "forbidden" or filtered. T0547 384 :H 1knwA 337 :V T0547 387 :SILTLF 1knwA 340 :PLCESG Number of specific fragments extracted= 2 number of extra gaps= 1 total=71325 # 2bkxA.384.156 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)F392 (2bkxA)N165 because G (3-10) conformation "forbidden" or filtered. T0547 384 :HLESILTL 2bkxA 157 :LNEQTRQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=71326 # 1kcfA.384.193 read from T0547.t04.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)F392 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0547 384 :HLESILTL 1kcfA 194 :MVKELIDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=71327 # 1owlA.384.173 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)F392 (1owlA)I182 because G (3-10) conformation "forbidden" or filtered. T0547 384 :HLESILTL 1owlA 174 :LSPEQLTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=71328 # 7odcA.384.354 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 384 :HLESILTLF 7odcA 355 :IWGPTCDGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71329 # 1wmgA.384.15 read from T0547.t04.many.frag # found chain 1wmgA in template set T0547 384 :HLESILTLF 1wmgA 862 :IRQKICSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71330 # 1e0tA.384.326 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1e0tA)E333 T0547 384 :HLESI 1e0tA 327 :IMATI T0547 391 :LF 1e0tA 334 :RT Number of specific fragments extracted= 2 number of extra gaps= 1 total=71332 # 1fcqA.384.210 read from T0547.t04.many.frag # found chain 1fcqA in training set T0547 384 :HLESILTLF 1fcqA 211 :KMSWLFESE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71333 # 1m2oA.384.320 read from T0547.t04.many.frag # found chain 1m2oA in template set T0547 384 :HLESILTLF 1m2oA 321 :HYKKACKFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=71334 # 1jl0A.384.128 read from T0547.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)H384 (1jl0A)N129 because Y (epsilon') conformation "forbidden" or filtered. T0547 385 :LESILTLF 1jl0A 130 :FQEEIEFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=71335 # 1yukA.384.9 read from T0547.t04.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)H384 (1yukA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 385 :LESILTLF 1yukA 11 :CRECIESG Number of specific fragments extracted= 1 number of extra gaps= 1 total=71336 # 1y0zA.384.280 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 384 :HLESILTLF 1y0zA 281 :IVHDCLRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71337 # 1yhtA.384.293 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1yhtA)N301 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1yhtA)N301 T0547 384 :HLESIL 1yhtA 294 :AAKDVI T0547 392 :F 1yhtA 302 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=71339 # 1ijbA.384.190 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 384 :HLESILTLF 1ijbA 690 :IVSYLCDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71340 # 1zx4A.384.67 read from T0547.t04.many.frag # found chain 1zx4A in template set T0547 384 :HLESILTLF 1zx4A 209 :DYKTLCAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71341 # 1v5vA.384.229 read from T0547.t04.many.frag # found chain 1v5vA in training set T0547 384 :HLESILTLF 1v5vA 230 :VWERILEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71342 # 1yvrA.384.299 read from T0547.t04.many.frag # found chain 1yvrA in template set T0547 384 :HLESILTLF 1yvrA 300 :EVSSVCERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71343 # 1puc.384.41 read from T0547.t04.many.frag # found chain 1puc in template set Warning: unaligning (T0547)H384 (1puc)L43 because P (beta_P) conformation "forbidden" or filtered. T0547 385 :LESILTLF 1puc 44 :PKAMLKAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=71344 # 1a6m.384.34 read from T0547.t04.many.frag # found chain 1a6m in training set T0547 384 :HLESILTLF 1a6m 35 :SHPETLEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=71345 # 1bc5A.384.182 read from T0547.t04.many.frag # found chain 1bc5A in template set T0547 384 :HLESILTLF 1bc5A 198 :VRQELANYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71346 # 1e2kA.384.268 read from T0547.t04.many.frag # found chain 1e2kA in training set T0547 384 :HLESILTLF 1e2kA 314 :VLAKRLRSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=71347 # 1qg8A.384.166 read from T0547.t04.many.frag # found chain 1qg8A in training set T0547 384 :HLESILTLF 1qg8A 168 :VLEKVKEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=71348 # 1t06A.384.111 read from T0547.t04.many.frag # found chain 1t06A in template set Warning: unaligning (T0547)F392 (1t06A)G120 because T (delta_L) conformation "forbidden" or filtered. T0547 384 :HLESILTL 1t06A 112 :VADKWIAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=71349 # 4dpvZ.384.85 read from T0547.t04.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)H384 (4dpvZ)N86 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F392 (4dpvZ)G94 because T (delta_L) conformation "forbidden" or filtered. T0547 385 :LESILTL 4dpvZ 87 :MDKTAVN Number of specific fragments extracted= 1 number of extra gaps= 2 total=71350 # 1xw8A.384.226 read from T0547.t04.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)F392 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xw8A)I240 T0547 384 :HLESILTL 1xw8A 227 :FARRLRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71351 # 1usgA.384.235 read from T0547.t04.many.frag # found chain 1usgA in training set Warning: unaligning (T0547)E386 (1usgA)G238 because S (epsilon) conformation "forbidden" or filtered. T0547 384 :HL 1usgA 236 :IA T0547 387 :SILTLF 1usgA 239 :DAAEGM Number of specific fragments extracted= 2 number of extra gaps= 1 total=71353 # 1ei6A.384.319 read from T0547.t04.many.frag # found chain 1ei6A in template set Warning: unaligning (T0547)H384 (1ei6A)T321 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F392 (1ei6A)F329 because G (3-10) conformation "forbidden" or filtered. T0547 385 :LESILTL 1ei6A 322 :RSQACQR Number of specific fragments extracted= 1 number of extra gaps= 2 total=71354 # 1tn6B.384.121 read from T0547.t04.many.frag # found chain 1tn6B in template set T0547 384 :HLESILTLF 1tn6B 622 :VATDVCQFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71355 # 2sicI.384.38 read from T0547.t04.many.frag # found chain 2sicI in training set T0547 384 :HLESILTLF 2sicI 45 :AAGSACADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71356 # 2a2cA.384.190 read from T0547.t04.many.frag # found chain 2a2cA in training set T0547 384 :HLESILTLF 2a2cA 171 :LAEICAKSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71357 # 1knwA.385.337 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L385 (1knwA)A338 because Y (epsilon') conformation "forbidden" or filtered. T0547 386 :ESILTLFD 1knwA 339 :GPLCESGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=71358 # 1kcfA.385.194 read from T0547.t04.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)F392 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0547 385 :LESILTL 1kcfA 195 :VKELIDG T0547 393 :D 1kcfA 203 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=71360 # 1fcqA.385.211 read from T0547.t04.many.frag # found chain 1fcqA in training set T0547 385 :LESILTLFD 1fcqA 212 :MSWLFESED Number of specific fragments extracted= 1 number of extra gaps= 0 total=71361 # 1owlA.385.174 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 385 :LESILTLFD 1owlA 175 :SPEQLTAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71362 # 2bkxA.385.157 read from T0547.t04.many.frag # found chain 2bkxA in training set T0547 385 :LESILTLFD 2bkxA 158 :NEQTRQANA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71363 # 1wmgA.385.16 read from T0547.t04.many.frag # found chain 1wmgA in template set T0547 385 :LESILTLFD 1wmgA 863 :RQKICSSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71364 # 1e0tA.385.327 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1e0tA)E333 T0547 385 :LESI 1e0tA 328 :MATI T0547 391 :LFD 1e0tA 334 :RTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=71366 # 1m2oA.385.321 read from T0547.t04.many.frag # found chain 1m2oA in template set T0547 385 :LESILTLFD 1m2oA 322 :YKKACKFYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=71367 # 7odcA.385.355 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 385 :LESILTLFD 7odcA 356 :WGPTCDGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71368 # 1jl0A.385.129 read from T0547.t04.many.frag # found chain 1jl0A in training set T0547 385 :LESILTLFD 1jl0A 130 :FQEEIEFLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=71369 # 1yhtA.385.294 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1yhtA)N301 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1yhtA)N301 T0547 385 :LESIL 1yhtA 295 :AKDVI T0547 392 :FD 1yhtA 302 :WD Number of specific fragments extracted= 2 number of extra gaps= 1 total=71371 # 1ijbA.385.191 read from T0547.t04.many.frag # found chain 1ijbA in training set T0547 385 :LESILTLFD 1ijbA 691 :VSYLCDLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71372 # 1y0zA.385.281 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 385 :LESILTLFD 1y0zA 282 :VHDCLRILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71373 # 1zx4A.385.68 read from T0547.t04.many.frag # found chain 1zx4A in template set T0547 385 :LESILTLFD 1zx4A 210 :YKTLCAVGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71374 # 1qg8A.385.167 read from T0547.t04.many.frag # found chain 1qg8A in training set T0547 385 :LESILTLFD 1qg8A 169 :LEKVKEKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71375 # 2bduA.385.268 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 385 :LESILTLFD 2bduA 269 :LEKYMDSYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71376 # 1yukA.385.10 read from T0547.t04.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)F392 (1yukA)G18 because Y (epsilon') conformation "forbidden" or filtered. T0547 385 :LESILTL 1yukA 11 :CRECIES T0547 393 :D 1yukA 19 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=71378 # 1v5vA.385.230 read from T0547.t04.many.frag # found chain 1v5vA in training set T0547 385 :LESILTLFD 1v5vA 231 :WERILEEGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71379 # 1e2kA.385.269 read from T0547.t04.many.frag # found chain 1e2kA in training set T0547 385 :LESILTLFD 1e2kA 315 :LAKRLRSMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=71380 # 2bfwA.385.108 read from T0547.t04.many.frag # found chain 2bfwA in training set T0547 385 :LESILTLFD 2bfwA 322 :VRELYGSVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71381 # 2a2cA.385.191 read from T0547.t04.many.frag # found chain 2a2cA in training set T0547 385 :LESILTLFD 2a2cA 172 :AEICAKSER Number of specific fragments extracted= 1 number of extra gaps= 0 total=71382 # 1puc.385.42 read from T0547.t04.many.frag # found chain 1puc in template set T0547 385 :LESILTLFD 1puc 44 :PKAMLKAIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71383 # 1bc5A.385.183 read from T0547.t04.many.frag # found chain 1bc5A in template set T0547 385 :LESILTLFD 1bc5A 199 :RQELANYVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71384 # 1xw8A.385.227 read from T0547.t04.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)F392 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xw8A)I240 T0547 385 :LESILTL 1xw8A 228 :ARRLRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71385 # 1rwhA.385.203 read from T0547.t04.many.frag # found chain 1rwhA in training set T0547 385 :LESILTLFD 1rwhA 204 :LNHAVAGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71386 # 1x38A.385.529 read from T0547.t04.many.frag # found chain 1x38A in training set T0547 385 :LESILTLFD 1x38A 530 :VQPLLAASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71387 # 1yvrA.385.300 read from T0547.t04.many.frag # found chain 1yvrA in template set T0547 385 :LESILTLFD 1yvrA 301 :VSSVCERLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=71388 # 1a6m.385.35 read from T0547.t04.many.frag # found chain 1a6m in training set T0547 385 :LESILTLFD 1a6m 36 :HPETLEKFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71389 # 1yovA.385.242 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 385 :LESILTLFD 1yovA 240 :KEDFRDLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71390 # 1pa7A.385.20 read from T0547.t04.many.frag # found chain 1pa7A in training set T0547 385 :LESILTLFD 1pa7A 21 :LAWINESLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71391 # 1knwA.386.338 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 386 :ESILTLFDL 1knwA 339 :GPLCESGDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71392 # 1fcqA.386.212 read from T0547.t04.many.frag # found chain 1fcqA in training set T0547 386 :ESILTLFDL 1fcqA 213 :SWLFESEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71393 # 1kcfA.386.195 read from T0547.t04.many.frag # found chain 1kcfA in template set T0547 386 :ESILTLFDL 1kcfA 196 :KELIDGQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71394 # 1owlA.386.175 read from T0547.t04.many.frag # found chain 1owlA in training set T0547 386 :ESILTLFDL 1owlA 176 :PEQLTAIAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71395 # 2bkxA.386.158 read from T0547.t04.many.frag # found chain 2bkxA in training set T0547 386 :ESILTLFDL 2bkxA 159 :EQTRQANAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71396 # 1e0tA.386.328 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1e0tA)E333 T0547 386 :ESI 1e0tA 329 :ATI T0547 391 :LFDL 1e0tA 334 :RTDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=71398 # 7odcA.386.356 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 386 :ESILTLFDL 7odcA 357 :GPTCDGLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71399 # 1wmgA.386.17 read from T0547.t04.many.frag # found chain 1wmgA in template set T0547 386 :ESILTLFDL 1wmgA 864 :QKICSSLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71400 # 1jl0A.386.130 read from T0547.t04.many.frag # found chain 1jl0A in training set T0547 386 :ESILTLFDL 1jl0A 131 :QEEIEFLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71401 # 1yhtA.386.295 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1yhtA)N301 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1yhtA)N301 T0547 386 :ESIL 1yhtA 296 :KDVI T0547 392 :FDL 1yhtA 302 :WDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=71403 # 2bduA.386.269 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 386 :ESILTLFDL 2bduA 270 :EKYMDSYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71404 # 2bfwA.386.109 read from T0547.t04.many.frag # found chain 2bfwA in training set T0547 386 :ESILTLFDL 2bfwA 323 :RELYGSVDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=71405 # 1m2oA.386.322 read from T0547.t04.many.frag # found chain 1m2oA in template set T0547 386 :ESILTLFDL 1m2oA 323 :KKACKFYNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71406 # 1e2kA.386.270 read from T0547.t04.many.frag # found chain 1e2kA in training set T0547 386 :ESILTLFDL 1e2kA 316 :AKRLRSMHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71407 # 1zx4A.386.69 read from T0547.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0547)L394 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zx4A)G221 T0547 386 :ESILTLFD 1zx4A 211 :KTLCAVGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71408 # 2a2cA.386.192 read from T0547.t04.many.frag # found chain 2a2cA in training set T0547 386 :ESILTLFDL 2a2cA 173 :EICAKSERY Number of specific fragments extracted= 1 number of extra gaps= 0 total=71409 # 1qg8A.386.168 read from T0547.t04.many.frag # found chain 1qg8A in training set Warning: unaligning (T0547)F392 (1qg8A)F176 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D393 (1qg8A)G177 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L394 (1qg8A)S178 because Y (epsilon') conformation "forbidden" or filtered. T0547 386 :ESILTL 1qg8A 170 :EKVKEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=71410 # 1a6m.386.36 read from T0547.t04.many.frag # found chain 1a6m in training set T0547 386 :ESILTLFDL 1a6m 37 :PETLEKFDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71411 # 1pa7A.386.21 read from T0547.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)D393 (1pa7A)Q29 because L (left) conformation "forbidden" or filtered. T0547 386 :ESILTLF 1pa7A 22 :AWINESL T0547 394 :L 1pa7A 30 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=71413 # 1rwhA.386.204 read from T0547.t04.many.frag # found chain 1rwhA in training set T0547 386 :ESILTLFDL 1rwhA 205 :NHAVAGLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71414 # 1x38A.386.530 read from T0547.t04.many.frag # found chain 1x38A in training set T0547 386 :ESILTLFDL 1x38A 531 :QPLLAASDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71415 # 1yovA.386.243 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 386 :ESILTLFDL 1yovA 241 :EDFRDLIRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71416 # 4dpvZ.386.87 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 386 :ESILTLFDL 4dpvZ 88 :DKTAVNGNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=71417 # 1nnlA.386.202 read from T0547.t04.many.frag # found chain 1nnlA in training set T0547 386 :ESILTLFDL 1nnlA 203 :QQVKDNAKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=71418 # 1l0bA.386.192 read from T0547.t04.many.frag # found chain 1l0bA in template set T0547 386 :ESILTLFDL 1l0bA 1781 :DWVLDSISV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71419 # 1y0zA.386.282 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 386 :ESILTLFDL 1y0zA 283 :HDCLRILEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71420 # 1xw8A.386.228 read from T0547.t04.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)F392 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xw8A)I240 T0547 386 :ESILTL 1xw8A 229 :RRLRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71421 # 1wzuA.386.200 read from T0547.t04.many.frag # found chain 1wzuA in template set T0547 386 :ESILTLFDL 1wzuA 201 :PEVQEKADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71422 # 1v6sA.386.168 read from T0547.t04.many.frag # found chain 1v6sA in training set T0547 386 :ESILTLFDL 1v6sA 169 :EKEVRALSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71423 # 1q42A.386.33 read from T0547.t04.many.frag # found chain 1q42A in template set T0547 386 :ESILTLFDL 1q42A 14 :KRFLASLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71424 # 1fcqA.387.213 read from T0547.t04.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)G395 (1fcqA)L222 because P (beta_P) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1fcqA 214 :WLFESEDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=71425 # 1knwA.387.339 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)F392 (1knwA)G345 because G (3-10) conformation "forbidden" or filtered. T0547 387 :SILTL 1knwA 340 :PLCES T0547 393 :DLG 1knwA 346 :DVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=71427 # 1kcfA.387.196 read from T0547.t04.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)F392 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0547 387 :SILTL 1kcfA 197 :ELIDG T0547 393 :DLG 1kcfA 203 :KIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=71429 # 1owlA.387.176 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)G395 (1owlA)L185 because G (3-10) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1owlA 177 :EQLTAIAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=71430 # 2bkxA.387.159 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)F392 (2bkxA)N165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (2bkxA)Y168 because G (3-10) conformation "forbidden" or filtered. T0547 387 :SILTL 2bkxA 160 :QTRQA T0547 393 :DL 2bkxA 166 :AR Number of specific fragments extracted= 2 number of extra gaps= 2 total=71432 # 2bduA.387.270 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 387 :SILTLFDLG 2bduA 271 :KYMDSYDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71433 # 1yhtA.387.296 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1yhtA)N301 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1yhtA)N301 Warning: unaligning (T0547)D393 (1yhtA)D303 because Y (epsilon') conformation "forbidden" or filtered. T0547 387 :SIL 1yhtA 297 :DVI T0547 392 :F 1yhtA 302 :W T0547 394 :LG 1yhtA 304 :LG Number of specific fragments extracted= 3 number of extra gaps= 2 total=71436 # 7odcA.387.357 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 387 :SILTLFDLG 7odcA 358 :PTCDGLDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71437 # 2bfwA.387.110 read from T0547.t04.many.frag # found chain 2bfwA in training set T0547 387 :SILTLFDLG 2bfwA 324 :ELYGSVDFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71438 # 1e0tA.387.329 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1e0tA)E333 Warning: unaligning (T0547)G395 (1e0tA)V338 because G (3-10) conformation "forbidden" or filtered. T0547 387 :SI 1e0tA 330 :TI T0547 391 :LFDL 1e0tA 334 :RTDR Number of specific fragments extracted= 2 number of extra gaps= 2 total=71440 # 1jl0A.387.131 read from T0547.t04.many.frag # found chain 1jl0A in training set T0547 387 :SILTLFDLG 1jl0A 132 :EEIEFLNAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71441 # 1nnlA.387.203 read from T0547.t04.many.frag # found chain 1nnlA in training set T0547 387 :SILTLFDLG 1nnlA 204 :QVKDNAKWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=71442 # 1zx4A.387.70 read from T0547.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0547)L394 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zx4A)G221 T0547 387 :SILTLFD 1zx4A 212 :TLCAVGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71443 # 1qg8A.387.169 read from T0547.t04.many.frag # found chain 1qg8A in training set Warning: unaligning (T0547)D393 (1qg8A)G177 because T (delta_L) conformation "forbidden" or filtered. T0547 387 :SILTLF 1qg8A 171 :KVKEKF T0547 394 :LG 1qg8A 178 :SY Number of specific fragments extracted= 2 number of extra gaps= 1 total=71445 # 1q42A.387.34 read from T0547.t04.many.frag # found chain 1q42A in template set Warning: unaligning (T0547)G395 (1q42A)L23 because P (beta_P) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1q42A 15 :RFLASLDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=71446 # 1e2kA.387.271 read from T0547.t04.many.frag # found chain 1e2kA in training set Warning: unaligning (T0547)D393 (1e2kA)H323 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1e2kA)F325 because E (beta_S) conformation "forbidden" or filtered. T0547 387 :SILTLF 1e2kA 317 :KRLRSM T0547 394 :L 1e2kA 324 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=71448 # 1yovA.387.244 read from T0547.t04.many.frag # found chain 1yovA in template set Warning: unaligning (T0547)G395 (1yovA)G250 because G (3-10) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1yovA 242 :DFRDLIRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=71449 # 1p35A.387.68 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)G395 (1p35A)L78 because G (3-10) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1p35A 70 :KVDEQFDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=71450 # 1v6sA.387.169 read from T0547.t04.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)G395 (1v6sA)L178 because G (3-10) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1v6sA 170 :KEVRALSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=71451 # 1wmgA.387.18 read from T0547.t04.many.frag # found chain 1wmgA in template set T0547 387 :SILTLFDLG 1wmgA 865 :KICSSLDAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71452 # 1x38A.387.531 read from T0547.t04.many.frag # found chain 1x38A in training set T0547 387 :SILTLFDLG 1x38A 532 :PLLAASDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71453 # 2a2cA.387.193 read from T0547.t04.many.frag # found chain 2a2cA in training set T0547 387 :SILTLFDLG 2a2cA 174 :ICAKSERYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71454 # 1rwhA.387.205 read from T0547.t04.many.frag # found chain 1rwhA in training set T0547 387 :SILTLFDLG 1rwhA 206 :HAVAGLSQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71455 # 1ng6A.387.81 read from T0547.t04.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)G395 (1ng6A)Y90 because G (3-10) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1ng6A 82 :KELDILEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=71456 # 1m2oA.387.323 read from T0547.t04.many.frag # found chain 1m2oA in template set T0547 387 :SILTLFDLG 1m2oA 324 :KACKFYNQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71457 # 1bc5A.387.185 read from T0547.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D393 (1bc5A)E207 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1bc5A)S209 because Y (epsilon') conformation "forbidden" or filtered. T0547 387 :SILTLF 1bc5A 201 :ELANYV T0547 394 :L 1bc5A 208 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=71459 # 1wzuA.387.201 read from T0547.t04.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)G395 (1wzuA)I210 because E (beta_S) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1wzuA 202 :EVQEKADI Number of specific fragments extracted= 1 number of extra gaps= 1 total=71460 # 1a6m.387.37 read from T0547.t04.many.frag # found chain 1a6m in training set Warning: unaligning (T0547)G395 (1a6m)F46 because G (3-10) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1a6m 38 :ETLEKFDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=71461 # 1pa7A.387.22 read from T0547.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)G395 (1pa7A)N31 because D (zeta) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1pa7A 23 :WINESLQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=71462 # 1y0zA.387.283 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 387 :SILTLFDLG 1y0zA 284 :DCLRILEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71463 # 1fcqA.388.214 read from T0547.t04.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)G395 (1fcqA)L222 because P (beta_P) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1fcqA 215 :LFESEDV T0547 396 :Y 1fcqA 223 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=71465 # 1knwA.388.340 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)F392 (1knwA)G345 because G (3-10) conformation "forbidden" or filtered. T0547 388 :ILTL 1knwA 341 :LCES T0547 393 :DLGY 1knwA 346 :DVFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=71467 # 1kcfA.388.197 read from T0547.t04.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)F392 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1kcfA)L205 because E (beta_S) conformation "forbidden" or filtered. T0547 388 :ILTL 1kcfA 198 :LIDG T0547 393 :DL 1kcfA 203 :KI T0547 396 :Y 1kcfA 206 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=71470 # 2bduA.388.271 read from T0547.t04.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)G395 (2bduA)V279 because E (beta_S) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 2bduA 272 :YMDSYDI T0547 396 :Y 2bduA 280 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=71472 # 1owlA.388.177 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)G395 (1owlA)L185 because G (3-10) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1owlA 178 :QLTAIAP T0547 396 :Y 1owlA 186 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=71474 # 1yhtA.388.297 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1yhtA)N301 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1yhtA)N301 Warning: unaligning (T0547)G395 (1yhtA)G305 because G (3-10) conformation "forbidden" or filtered. T0547 388 :IL 1yhtA 298 :VI T0547 392 :FDL 1yhtA 302 :WDL T0547 396 :Y 1yhtA 306 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=71477 # 7odcA.388.358 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 388 :ILTLFDLGY 7odcA 359 :TCDGLDRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71478 # 2bkxA.388.160 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)F392 (2bkxA)N165 because G (3-10) conformation "forbidden" or filtered. T0547 388 :ILTL 2bkxA 161 :TRQA T0547 393 :DLGY 2bkxA 166 :ARYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=71480 # 2bfwA.388.111 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)G395 (2bfwA)V332 because E (beta_S) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 2bfwA 325 :LYGSVDF T0547 396 :Y 2bfwA 333 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=71482 # 1nnlA.388.204 read from T0547.t04.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)G395 (1nnlA)Y212 because E (beta_S) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1nnlA 205 :VKDNAKW T0547 396 :Y 1nnlA 213 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=71484 # 1p35A.388.69 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)G395 (1p35A)L78 because G (3-10) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1p35A 71 :VDEQFDQ T0547 396 :Y 1p35A 79 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=71486 # 1e0tA.388.330 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1e0tA)E333 Warning: unaligning (T0547)G395 (1e0tA)V338 because G (3-10) conformation "forbidden" or filtered. T0547 388 :I 1e0tA 331 :I T0547 391 :LFDL 1e0tA 334 :RTDR T0547 396 :Y 1e0tA 339 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=71489 # 1jl0A.388.132 read from T0547.t04.many.frag # found chain 1jl0A in training set T0547 388 :ILTLFDLGY 1jl0A 133 :EIEFLNAIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=71490 # 1q42A.388.35 read from T0547.t04.many.frag # found chain 1q42A in template set Warning: unaligning (T0547)G395 (1q42A)L23 because P (beta_P) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1q42A 16 :FLASLDL T0547 396 :Y 1q42A 24 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=71492 # 1pa7A.388.23 read from T0547.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)D393 (1pa7A)Q29 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1pa7A)N31 because D (zeta) conformation "forbidden" or filtered. T0547 388 :ILTLF 1pa7A 24 :INESL T0547 394 :L 1pa7A 30 :L T0547 396 :Y 1pa7A 32 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=71495 # 2a2cA.388.194 read from T0547.t04.many.frag # found chain 2a2cA in training set T0547 388 :ILTLFDLGY 2a2cA 175 :CAKSERYIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71496 # 1v6sA.388.170 read from T0547.t04.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)G395 (1v6sA)L178 because G (3-10) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1v6sA 171 :EVRALSR T0547 396 :Y 1v6sA 179 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=71498 # 1e2kA.388.272 read from T0547.t04.many.frag # found chain 1e2kA in training set T0547 388 :ILTLFDLGY 1e2kA 318 :RLRSMHVFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71499 # 1zx4A.388.71 read from T0547.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0547)L394 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zx4A)G221 Warning: unaligning (T0547)Y396 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zx4A)G221 T0547 388 :ILTLFD 1zx4A 213 :LCAVGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71500 # 1x38A.388.532 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)G395 (1x38A)L540 because E (beta_S) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1x38A 533 :LLAASDA T0547 396 :Y 1x38A 541 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=71502 # 1yovA.388.245 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 388 :ILTLFDLGY 1yovA 243 :FRDLIRQGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71503 # 1ng6A.388.82 read from T0547.t04.many.frag # found chain 1ng6A in training set T0547 388 :ILTLFDLGY 1ng6A 83 :ELDILEVYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71504 # 1e0tA.388.301 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L391 (1e0tA)G305 because T (delta_L) conformation "forbidden" or filtered. T0547 388 :ILT 1e0tA 302 :ILD T0547 392 :FDLGY 1e0tA 306 :TDAVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=71506 # 1qg8A.388.170 read from T0547.t04.many.frag # found chain 1qg8A in training set Warning: unaligning (T0547)D393 (1qg8A)G177 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L394 (1qg8A)S178 because Y (epsilon') conformation "forbidden" or filtered. T0547 388 :ILTLF 1qg8A 172 :VKEKF T0547 395 :GY 1qg8A 179 :YW Number of specific fragments extracted= 2 number of extra gaps= 1 total=71508 # 1rwhA.388.206 read from T0547.t04.many.frag # found chain 1rwhA in training set T0547 388 :ILTLFDLGY 1rwhA 207 :AVAGLSQVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=71509 # 1ynfA.388.404 read from T0547.t04.many.frag # found chain 1ynfA in template set T0547 388 :ILTLFDLGY 1ynfA 394 :LNDWVDRYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=71510 # 1mun.388.9 read from T0547.t04.many.frag # found chain 1mun in training set T0547 388 :ILTLFDLGY 1mun 10 :VLDWYDKYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71511 # 1wleA.388.190 read from T0547.t04.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)G395 (1wleA)I198 because E (beta_S) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1wleA 191 :IAEKLDI T0547 396 :Y 1wleA 199 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=71513 # 1zroA.388.456 read from T0547.t04.many.frag # found chain 1zroA in template set T0547 388 :ILTLFDLGY 1zroA 457 :VWNVISWVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=71514 # 1kyfA.388.70 read from T0547.t04.many.frag # found chain 1kyfA in training set T0547 388 :ILTLFDLGY 1kyfA 762 :LQTNLNLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=71515 # 1fcqA.389.215 read from T0547.t04.many.frag # found chain 1fcqA in training set T0547 389 :LTLFDLGYV 1fcqA 216 :FESEDVLLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71516 # 1knwA.389.341 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 389 :LTLFDLGYV 1knwA 342 :CESGDVFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71517 # 1kcfA.389.198 read from T0547.t04.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)F392 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0547 389 :LTL 1kcfA 199 :IDG T0547 393 :DLGYV 1kcfA 203 :KILFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71519 # 2bduA.389.272 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 389 :LTLFDLGYV 2bduA 273 :MDSYDIVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71520 # 1owlA.389.178 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)G395 (1owlA)L185 because G (3-10) conformation "forbidden" or filtered. T0547 389 :LTLFDL 1owlA 179 :LTAIAP T0547 396 :YV 1owlA 186 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=71522 # 1nnlA.389.205 read from T0547.t04.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)G395 (1nnlA)Y212 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V397 (1nnlA)T214 because G (3-10) conformation "forbidden" or filtered. T0547 389 :LTLFDL 1nnlA 206 :KDNAKW T0547 396 :Y 1nnlA 213 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=71524 # 7odcA.389.359 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 389 :LTLFDLGYV 7odcA 360 :CDGLDRIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71525 # 2bkxA.389.161 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)G395 (2bkxA)Y168 because G (3-10) conformation "forbidden" or filtered. T0547 389 :LTLFDL 2bkxA 162 :RQANAR T0547 396 :YV 2bkxA 169 :FP Number of specific fragments extracted= 2 number of extra gaps= 1 total=71527 # 1yhtA.389.298 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1yhtA)N301 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1yhtA)N301 Warning: unaligning (T0547)D393 (1yhtA)D303 because Y (epsilon') conformation "forbidden" or filtered. T0547 389 :L 1yhtA 299 :I T0547 392 :F 1yhtA 302 :W T0547 394 :LGYV 1yhtA 304 :LGVW Number of specific fragments extracted= 3 number of extra gaps= 2 total=71530 # 2bfwA.389.112 read from T0547.t04.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)G395 (2bfwA)V332 because E (beta_S) conformation "forbidden" or filtered. T0547 389 :LTLFDL 2bfwA 326 :YGSVDF T0547 396 :YV 2bfwA 333 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=71532 # 1p35A.389.70 read from T0547.t04.many.frag # found chain 1p35A in template set T0547 389 :LTLFDLGYV 1p35A 72 :DEQFDQLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=71533 # 1q42A.389.36 read from T0547.t04.many.frag # found chain 1q42A in template set Warning: unaligning (T0547)G395 (1q42A)L23 because P (beta_P) conformation "forbidden" or filtered. T0547 389 :LTLFDL 1q42A 17 :LASLDL T0547 396 :YV 1q42A 24 :YT Number of specific fragments extracted= 2 number of extra gaps= 1 total=71535 # 1v6sA.389.171 read from T0547.t04.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)G395 (1v6sA)L178 because G (3-10) conformation "forbidden" or filtered. T0547 389 :LTLFDL 1v6sA 172 :VRALSR T0547 396 :YV 1v6sA 179 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=71537 # 1pa7A.389.24 read from T0547.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)V397 (1pa7A)T33 because G (3-10) conformation "forbidden" or filtered. T0547 389 :LTLFDLGY 1pa7A 25 :NESLQLNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=71538 # 1e0tA.389.331 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L389 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1e0tA)E333 Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1e0tA)E333 T0547 391 :LFDLGYV 1e0tA 334 :RTDRVMN Number of specific fragments extracted= 1 number of extra gaps= 1 total=71539 # 1jl0A.389.133 read from T0547.t04.many.frag # found chain 1jl0A in training set T0547 389 :LTLFDLGYV 1jl0A 134 :IEFLNAIFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71540 # 1ng6A.389.83 read from T0547.t04.many.frag # found chain 1ng6A in training set T0547 389 :LTLFDLGYV 1ng6A 84 :LDILEVYLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71541 # 2a2cA.389.195 read from T0547.t04.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)Y396 (2a2cA)G183 because T (delta_L) conformation "forbidden" or filtered. T0547 389 :LTLFDLG 2a2cA 176 :AKSERYI T0547 397 :V 2a2cA 184 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=71543 # 1rdqE.389.156 read from T0547.t04.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)V397 (1rdqE)R165 because T (delta_L) conformation "forbidden" or filtered. T0547 389 :LTLFDLGY 1rdqE 157 :LHSLDLIY Number of specific fragments extracted= 1 number of extra gaps= 1 total=71544 # 1yovA.389.246 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 389 :LTLFDLGYV 1yovA 244 :RDLIRQGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71545 # 1bco.389.120 read from T0547.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0547)F392 (1bco)G371 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1bco)M374 because P (beta_P) conformation "forbidden" or filtered. T0547 389 :LTL 1bco 368 :LLM T0547 393 :DL 1bco 372 :AK T0547 396 :YV 1bco 375 :HW Number of specific fragments extracted= 3 number of extra gaps= 2 total=71548 # 1e0tA.389.302 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L391 (1e0tA)G305 because T (delta_L) conformation "forbidden" or filtered. T0547 389 :LT 1e0tA 303 :LD T0547 392 :FDLGYV 1e0tA 306 :TDAVML Number of specific fragments extracted= 2 number of extra gaps= 1 total=71550 # 1wleA.389.191 read from T0547.t04.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)F392 (1wleA)L195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V397 (1wleA)Q200 because G (3-10) conformation "forbidden" or filtered. T0547 389 :LTL 1wleA 192 :AEK T0547 393 :DLGY 1wleA 196 :DIIR Number of specific fragments extracted= 2 number of extra gaps= 2 total=71552 # 1rwhA.389.207 read from T0547.t04.many.frag # found chain 1rwhA in training set T0547 389 :LTLFDLGYV 1rwhA 208 :VAGLSQVWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71553 # 1x38A.389.533 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)G395 (1x38A)L540 because E (beta_S) conformation "forbidden" or filtered. T0547 389 :LTLFDL 1x38A 534 :LAASDA T0547 396 :YV 1x38A 541 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=71555 # 1e2kA.389.273 read from T0547.t04.many.frag # found chain 1e2kA in training set Warning: unaligning (T0547)G395 (1e2kA)F325 because E (beta_S) conformation "forbidden" or filtered. T0547 389 :LTLFDL 1e2kA 319 :LRSMHV T0547 396 :YV 1e2kA 326 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=71557 # 1qg8A.389.171 read from T0547.t04.many.frag # found chain 1qg8A in training set Warning: unaligning (T0547)D393 (1qg8A)G177 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L394 (1qg8A)S178 because Y (epsilon') conformation "forbidden" or filtered. T0547 389 :LTLF 1qg8A 173 :KEKF T0547 395 :GYV 1qg8A 179 :YWD Number of specific fragments extracted= 2 number of extra gaps= 1 total=71559 # 1zroA.389.457 read from T0547.t04.many.frag # found chain 1zroA in template set T0547 389 :LTLFDLGYV 1zroA 458 :WNVISWVFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71560 # 1alu.389.124 read from T0547.t04.many.frag # found chain 1alu in template set T0547 389 :LTLFDLGYV 1alu 123 :IQFLQKKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71561 # 1mun.389.10 read from T0547.t04.many.frag # found chain 1mun in training set T0547 389 :LTLFDLGYV 1mun 11 :LDWYDKYGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71562 # 1fcqA.390.216 read from T0547.t04.many.frag # found chain 1fcqA in training set T0547 390 :TLFDLGYVD 1fcqA 217 :ESEDVLLPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71563 # 1knwA.390.342 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 390 :TLFDLGYVD 1knwA 343 :ESGDVFTQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71564 # 2bduA.390.273 read from T0547.t04.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)D398 (2bduA)K282 because L (left) conformation "forbidden" or filtered. T0547 390 :TLFDLGYV 2bduA 274 :DSYDIVLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=71565 # 1kcfA.390.199 read from T0547.t04.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)G395 (1kcfA)L205 because E (beta_S) conformation "forbidden" or filtered. T0547 390 :TLFDL 1kcfA 200 :DGQKI T0547 396 :YVD 1kcfA 206 :FEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=71567 # 1nnlA.390.206 read from T0547.t04.many.frag # found chain 1nnlA in training set T0547 390 :TLFDLGYVD 1nnlA 207 :DNAKWYITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71568 # 1owlA.390.179 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)G395 (1owlA)L185 because G (3-10) conformation "forbidden" or filtered. T0547 390 :TLFDL 1owlA 180 :TAIAP T0547 396 :YVD 1owlA 186 :LLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=71570 # 1yhtA.390.299 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)T390 because of BadResidue code BAD_PEPTIDE in next template residue (1yhtA)N301 Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1yhtA)N301 Warning: unaligning (T0547)D393 (1yhtA)D303 because Y (epsilon') conformation "forbidden" or filtered. T0547 392 :F 1yhtA 302 :W T0547 394 :LGYVD 1yhtA 304 :LGVWD Number of specific fragments extracted= 2 number of extra gaps= 2 total=71572 # 7odcA.390.360 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 390 :TLFDLGYVD 7odcA 361 :DGLDRIVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=71573 # 1p35A.390.71 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)G395 (1p35A)L78 because G (3-10) conformation "forbidden" or filtered. T0547 390 :TLFDL 1p35A 73 :EQFDQ T0547 396 :YVD 1p35A 79 :ERD Number of specific fragments extracted= 2 number of extra gaps= 1 total=71575 # 1q42A.390.37 read from T0547.t04.many.frag # found chain 1q42A in template set Warning: unaligning (T0547)D398 (1q42A)Q26 because P (beta_P) conformation "forbidden" or filtered. T0547 390 :TLFDLGYV 1q42A 18 :ASLDLLYT Number of specific fragments extracted= 1 number of extra gaps= 1 total=71576 # 1v6sA.390.172 read from T0547.t04.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)G395 (1v6sA)L178 because G (3-10) conformation "forbidden" or filtered. T0547 390 :TLFDL 1v6sA 173 :RALSR T0547 396 :YVD 1v6sA 179 :LKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=71578 # 2bkxA.390.162 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D398 (2bkxA)S171 because Y (epsilon') conformation "forbidden" or filtered. T0547 390 :TLFDLGYV 2bkxA 163 :QANARYFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=71579 # 1wleA.390.192 read from T0547.t04.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)D393 (1wleA)D196 because L (left) conformation "forbidden" or filtered. T0547 390 :TLF 1wleA 193 :EKL T0547 394 :LGYVD 1wleA 197 :IIRQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=71581 # 1rdqE.390.157 read from T0547.t04.many.frag # found chain 1rdqE in training set T0547 390 :TLFDLGYVD 1rdqE 158 :HSLDLIYRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71582 # 2bfwA.390.113 read from T0547.t04.many.frag # found chain 2bfwA in training set T0547 390 :TLFDLGYVD 2bfwA 327 :GSVDFVIIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71583 # 1e0tA.390.303 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L391 (1e0tA)G305 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1e0tA)S312 because P (beta_P) conformation "forbidden" or filtered. T0547 390 :T 1e0tA 304 :D T0547 392 :FDLGYV 1e0tA 306 :TDAVML Number of specific fragments extracted= 2 number of extra gaps= 2 total=71585 # 1ynfA.390.406 read from T0547.t04.many.frag # found chain 1ynfA in template set T0547 390 :TLFDLGYVD 1ynfA 396 :DWVDRYYRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71586 # 1bco.390.121 read from T0547.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0547)F392 (1bco)G371 because L (left) conformation "forbidden" or filtered. T0547 390 :TL 1bco 369 :LM T0547 393 :DLGYVD 1bco 372 :AKMHWT Number of specific fragments extracted= 2 number of extra gaps= 1 total=71588 # 1zroA.390.458 read from T0547.t04.many.frag # found chain 1zroA in template set T0547 390 :TLFDLGYVD 1zroA 459 :NVISWVFKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71589 # 2a2cA.390.196 read from T0547.t04.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)Y396 (2a2cA)G183 because T (delta_L) conformation "forbidden" or filtered. T0547 390 :TLFDLG 2a2cA 177 :KSERYI T0547 397 :VD 2a2cA 184 :TE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71591 # 1alu.390.125 read from T0547.t04.many.frag # found chain 1alu in template set T0547 390 :TLFDLGYVD 1alu 124 :QFLQKKAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=71592 # 1mun.390.11 read from T0547.t04.many.frag # found chain 1mun in training set T0547 390 :TLFDLGYVD 1mun 12 :DWYDKYGRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71593 # 1rwhA.390.208 read from T0547.t04.many.frag # found chain 1rwhA in training set Warning: unaligning (T0547)D398 (1rwhA)Y217 because P (beta_P) conformation "forbidden" or filtered. T0547 390 :TLFDLGYV 1rwhA 209 :AGLSQVWQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=71594 # 1pa7A.390.25 read from T0547.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)F392 (1pa7A)L28 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D393 (1pa7A)Q29 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1pa7A)N31 because D (zeta) conformation "forbidden" or filtered. T0547 390 :TL 1pa7A 26 :ES T0547 394 :L 1pa7A 30 :L T0547 396 :YVD 1pa7A 32 :LTK Number of specific fragments extracted= 3 number of extra gaps= 2 total=71597 # 1kyqA.390.204 read from T0547.t04.many.frag # found chain 1kyqA in template set T0547 390 :TLFDLGYVD 1kyqA 205 :RGIRLLAPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71598 # 1dj0A.390.143 read from T0547.t04.many.frag # found chain 1dj0A in training set Warning: unaligning (T0547)V397 (1dj0A)G157 because S (epsilon) conformation "forbidden" or filtered. T0547 390 :TLFDLGY 1dj0A 150 :RAAQCLL T0547 398 :D 1dj0A 158 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=71600 # 1ng6A.390.84 read from T0547.t04.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)G395 (1ng6A)Y90 because G (3-10) conformation "forbidden" or filtered. T0547 390 :TLFDL 1ng6A 85 :DILEV T0547 396 :YVD 1ng6A 91 :LPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71602 # 1l0bA.390.196 read from T0547.t04.many.frag # found chain 1l0bA in template set T0547 390 :TLFDLGYVD 1l0bA 1785 :DSISVYRCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71603 # 1yovA.390.247 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 390 :TLFDLGYVD 1yovA 245 :DLIRQGILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71604 # 1lrv.390.48 read from T0547.t04.many.frag # found chain 1lrv in template set T0547 390 :TLFDLGYVD 1lrv 49 :RNNPHLAVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71605 # 1fcqA.391.217 read from T0547.t04.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)G395 (1fcqA)L222 because P (beta_P) conformation "forbidden" or filtered. T0547 391 :LFDL 1fcqA 218 :SEDV T0547 396 :YVDL 1fcqA 223 :LPSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=71607 # 1nnlA.391.207 read from T0547.t04.many.frag # found chain 1nnlA in training set T0547 391 :LFDLGYVDL 1nnlA 208 :NAKWYITDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=71608 # 1p35A.391.72 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)G395 (1p35A)L78 because G (3-10) conformation "forbidden" or filtered. T0547 391 :LFDL 1p35A 74 :QFDQ T0547 396 :YVDL 1p35A 79 :ERDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=71610 # 2bduA.391.274 read from T0547.t04.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)G395 (2bduA)V279 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (2bduA)K282 because L (left) conformation "forbidden" or filtered. T0547 391 :LFDL 2bduA 275 :SYDI T0547 396 :YV 2bduA 280 :LV T0547 399 :L 2bduA 283 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=71613 # 1rdqE.391.158 read from T0547.t04.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)D393 (1rdqE)D161 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V397 (1rdqE)R165 because T (delta_L) conformation "forbidden" or filtered. T0547 391 :LF 1rdqE 159 :SL T0547 394 :LGY 1rdqE 162 :LIY T0547 398 :DL 1rdqE 166 :DL Number of specific fragments extracted= 3 number of extra gaps= 2 total=71616 # 1knwA.391.343 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)F392 (1knwA)G345 because G (3-10) conformation "forbidden" or filtered. T0547 391 :L 1knwA 344 :S T0547 393 :DLGYVDL 1knwA 346 :DVFTQQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71618 # 2bkxA.391.163 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D398 (2bkxA)S171 because Y (epsilon') conformation "forbidden" or filtered. T0547 391 :LFDLGYV 2bkxA 164 :ANARYFP T0547 399 :L 2bkxA 172 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=71620 # 1q42A.391.38 read from T0547.t04.many.frag # found chain 1q42A in template set Warning: unaligning (T0547)G395 (1q42A)L23 because P (beta_P) conformation "forbidden" or filtered. T0547 391 :LFDL 1q42A 19 :SLDL T0547 396 :YVDL 1q42A 24 :YTQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=71622 # 1alu.391.126 read from T0547.t04.many.frag # found chain 1alu in template set T0547 391 :LFDLGYVDL 1alu 125 :FLQKKAKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71623 # 7odcA.391.361 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D398 (7odcA)R369 because E (beta_S) conformation "forbidden" or filtered. T0547 391 :LFDLGYV 7odcA 362 :GLDRIVE T0547 399 :L 7odcA 370 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=71625 # 1kyqA.391.205 read from T0547.t04.many.frag # found chain 1kyqA in template set T0547 391 :LFDLGYVDL 1kyqA 206 :GIRLLAPDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71626 # 1v6sA.391.173 read from T0547.t04.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)D398 (1v6sA)D181 because L (left) conformation "forbidden" or filtered. T0547 391 :LFDLGYV 1v6sA 174 :ALSRLLK T0547 399 :L 1v6sA 182 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=71628 # 1kcfA.391.200 read from T0547.t04.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)F392 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0547 391 :L 1kcfA 201 :G T0547 393 :DLGYVDL 1kcfA 203 :KILFENE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71630 # 1pa7A.391.26 read from T0547.t04.many.frag # found chain 1pa7A in training set T0547 391 :LFDLGYVDL 1pa7A 27 :SLQLNLTKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71631 # 1yhtA.391.300 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)L391 because of BadResidue code BAD_PEPTIDE at template residue (1yhtA)N301 Warning: unaligning (T0547)D393 (1yhtA)D303 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L399 (1yhtA)G309 because S (epsilon) conformation "forbidden" or filtered. T0547 392 :F 1yhtA 302 :W T0547 394 :LGYVD 1yhtA 304 :LGVWD Number of specific fragments extracted= 2 number of extra gaps= 3 total=71633 # 1w33A.391.107 read from T0547.t04.many.frag # found chain 1w33A in template set Warning: unaligning (T0547)D398 (1w33A)G184 because S (epsilon) conformation "forbidden" or filtered. T0547 391 :LFDLGYV 1w33A 177 :NLELIQN T0547 399 :L 1w33A 185 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=71635 # 1wleA.391.193 read from T0547.t04.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)G395 (1wleA)I198 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1wleA)K201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L399 (1wleA)R202 because L (left) conformation "forbidden" or filtered. T0547 391 :LFDL 1wleA 194 :KLDI T0547 396 :YV 1wleA 199 :RQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=71637 # 1owlA.391.180 read from T0547.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)G395 (1owlA)L185 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L399 (1owlA)E189 because Y (epsilon') conformation "forbidden" or filtered. T0547 391 :LFDL 1owlA 181 :AIAP T0547 396 :YVD 1owlA 186 :LLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=71639 # 1rwhA.391.209 read from T0547.t04.many.frag # found chain 1rwhA in training set T0547 391 :LFDLGYVDL 1rwhA 210 :GLSQVWQYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71640 # 1x38A.391.175 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)V397 (1x38A)G182 because S (epsilon) conformation "forbidden" or filtered. T0547 391 :LFDLGY 1x38A 176 :LIPGLQ T0547 398 :DL 1x38A 183 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=71642 # 1zroA.391.459 read from T0547.t04.many.frag # found chain 1zroA in template set Warning: unaligning (T0547)D398 (1zroA)D467 because E (beta_S) conformation "forbidden" or filtered. T0547 391 :LFDLGYV 1zroA 460 :VISWVFK T0547 399 :L 1zroA 468 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=71644 # 1yovA.391.248 read from T0547.t04.many.frag # found chain 1yovA in template set Warning: unaligning (T0547)D398 (1yovA)K253 because E (beta_S) conformation "forbidden" or filtered. T0547 391 :LFDLGYV 1yovA 246 :LIRQGIL T0547 399 :L 1yovA 254 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=71646 # 1izmA.391.110 read from T0547.t04.many.frag # found chain 1izmA in template set T0547 391 :LFDLGYVDL 1izmA 109 :GIGLAQPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71647 # 1ynfA.391.407 read from T0547.t04.many.frag # found chain 1ynfA in template set T0547 391 :LFDLGYVDL 1ynfA 397 :WVDRYYRDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71648 # 1mc2A.391.45 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 391 :LFDLGYVDL 1mc2A 1047 :VHKCCYKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71649 # 1l8aA.391.707 read from T0547.t04.many.frag # found chain 1l8aA in template set T0547 391 :LFDLGYVDL 1l8aA 708 :GIRKGIYKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71650 1j5wA expands to /projects/compbio/data/pdb/1j5w.pdb.gz 1j5wA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1j5wA.391.106 read from T0547.t04.many.frag # adding 1j5wA to template set # found chain 1j5wA in template set Warning: unaligning (T0547)G395 (1j5wA)L99 because G (3-10) conformation "forbidden" or filtered. T0547 391 :LFDL 1j5wA 95 :SLEY T0547 396 :YVDL 1j5wA 100 :GINL Number of specific fragments extracted= 2 number of extra gaps= 1 total=71652 # 1ng6A.391.85 read from T0547.t04.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)G395 (1ng6A)Y90 because G (3-10) conformation "forbidden" or filtered. T0547 391 :LFDL 1ng6A 86 :ILEV T0547 396 :YVDL 1ng6A 91 :LPEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=71654 # 2a2cA.391.197 read from T0547.t04.many.frag # found chain 2a2cA in training set T0547 391 :LFDLGYVDL 2a2cA 178 :SERYIGTEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71655 # 1e2kA.391.275 read from T0547.t04.many.frag # found chain 1e2kA in training set T0547 391 :LFDLGYVDL 1e2kA 321 :SMHVFILDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=71656 # 1nnlA.392.208 read from T0547.t04.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)D398 (1nnlA)D215 because E (beta_S) conformation "forbidden" or filtered. T0547 392 :FDLGYV 1nnlA 209 :AKWYIT T0547 399 :LQ 1nnlA 216 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=71658 # 1rdqE.392.159 read from T0547.t04.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)G395 (1rdqE)I163 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V397 (1rdqE)R165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1rdqE)K168 because Y (epsilon') conformation "forbidden" or filtered. T0547 392 :FDL 1rdqE 160 :LDL T0547 396 :Y 1rdqE 164 :Y T0547 398 :DL 1rdqE 166 :DL Number of specific fragments extracted= 3 number of extra gaps= 3 total=71661 # 1fcqA.392.218 read from T0547.t04.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)G395 (1fcqA)L222 because P (beta_P) conformation "forbidden" or filtered. T0547 392 :FDL 1fcqA 219 :EDV T0547 396 :YVDLQ 1fcqA 223 :LPSVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=71663 # 1alu.392.127 read from T0547.t04.many.frag # found chain 1alu in template set Warning: unaligning (T0547)Q400 (1alu)D134 because P (beta_P) conformation "forbidden" or filtered. T0547 392 :FDLGYVDL 1alu 126 :LQKKAKNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=71664 # 2bkxA.392.164 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D398 (2bkxA)S171 because Y (epsilon') conformation "forbidden" or filtered. T0547 392 :FDLGYV 2bkxA 165 :NARYFP T0547 399 :LQ 2bkxA 172 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=71666 # 1a62.392.18 read from T0547.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)D398 (1a62)N25 because L (left) conformation "forbidden" or filtered. T0547 392 :FDLGYV 1a62 19 :ENMGLE T0547 399 :LQ 1a62 26 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=71668 # 2bduA.392.275 read from T0547.t04.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)G395 (2bduA)V279 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (2bduA)K282 because L (left) conformation "forbidden" or filtered. T0547 392 :FDL 2bduA 276 :YDI T0547 396 :YV 2bduA 280 :LV T0547 399 :LQ 2bduA 283 :EE Number of specific fragments extracted= 3 number of extra gaps= 2 total=71671 # 1pa7A.392.27 read from T0547.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)F392 (1pa7A)L28 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1pa7A)K34 because E (beta_S) conformation "forbidden" or filtered. T0547 393 :DLGYV 1pa7A 29 :QLNLT T0547 399 :LQ 1pa7A 35 :IE Number of specific fragments extracted= 2 number of extra gaps= 2 total=71673 # 1mc2A.392.46 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 392 :FDLGYVDLQ 1mc2A 1048 :HKCCYKKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=71674 # 1p35A.392.73 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)G395 (1p35A)L78 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1p35A)D81 because D (zeta) conformation "forbidden" or filtered. T0547 392 :FDL 1p35A 75 :FDQ T0547 396 :YV 1p35A 79 :ER T0547 399 :LQ 1p35A 82 :YS Number of specific fragments extracted= 3 number of extra gaps= 2 total=71677 # 1izmA.392.111 read from T0547.t04.many.frag # found chain 1izmA in template set T0547 392 :FDLGYVDLQ 1izmA 110 :IGLAQPELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71678 # 1w33A.392.108 read from T0547.t04.many.frag # found chain 1w33A in template set T0547 392 :FDLGYVDLQ 1w33A 178 :LELIQNGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71679 # 1knwA.392.344 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)F392 (1knwA)G345 because G (3-10) conformation "forbidden" or filtered. T0547 393 :DLGYVDLQ 1knwA 346 :DVFTQQEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=71680 # 1q42A.392.39 read from T0547.t04.many.frag # found chain 1q42A in template set Warning: unaligning (T0547)G395 (1q42A)L23 because P (beta_P) conformation "forbidden" or filtered. T0547 392 :FDL 1q42A 20 :LDL T0547 396 :YVDLQ 1q42A 24 :YTQPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=71682 # 1r9jA.392.536 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)F392 (1r9jA)G535 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L394 (1r9jA)Y537 because Y (epsilon') conformation "forbidden" or filtered. T0547 393 :D 1r9jA 536 :A T0547 395 :GYVDLQ 1r9jA 538 :SVVDVP Number of specific fragments extracted= 2 number of extra gaps= 2 total=71684 # 1kyqA.392.206 read from T0547.t04.many.frag # found chain 1kyqA in template set T0547 392 :FDLGYVDLQ 1kyqA 207 :IRLLAPDDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71685 # 1x38A.392.176 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)V397 (1x38A)G182 because S (epsilon) conformation "forbidden" or filtered. T0547 392 :FDLGY 1x38A 177 :IPGLQ T0547 398 :DLQ 1x38A 183 :DVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=71687 # 1yovA.392.249 read from T0547.t04.many.frag # found chain 1yovA in template set Warning: unaligning (T0547)G395 (1yovA)G250 because G (3-10) conformation "forbidden" or filtered. T0547 392 :FDL 1yovA 247 :IRQ T0547 396 :YVDLQ 1yovA 251 :ILKNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71689 # 1j5wA.392.107 read from T0547.t04.many.frag # found chain 1j5wA in template set T0547 392 :FDLGYVDLQ 1j5wA 96 :LEYLGINLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71690 # 1kcfA.392.201 read from T0547.t04.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)G395 (1kcfA)L205 because E (beta_S) conformation "forbidden" or filtered. T0547 392 :FDL 1kcfA 202 :QKI T0547 396 :YVDLQ 1kcfA 206 :FENEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71692 # 1gxyA.392.89 read from T0547.t04.many.frag # found chain 1gxyA in training set T0547 392 :FDLGYVDLQ 1gxyA 90 :VREFKENPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71693 # 7odcA.392.362 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)F392 (7odcA)L363 because G (3-10) conformation "forbidden" or filtered. T0547 393 :DLGYVDLQ 7odcA 364 :DRIVERCN Number of specific fragments extracted= 1 number of extra gaps= 1 total=71694 # 1yhtA.392.301 read from T0547.t04.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)G395 (1yhtA)G305 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V397 (1yhtA)W307 because G (3-10) conformation "forbidden" or filtered. T0547 392 :FDL 1yhtA 302 :WDL T0547 396 :Y 1yhtA 306 :V T0547 398 :DLQ 1yhtA 308 :DGR Number of specific fragments extracted= 3 number of extra gaps= 2 total=71697 # 1n3lA.392.148 read from T0547.t04.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)F392 because of BadResidue code BAD_PEPTIDE at template residue (1n3lA)G149 Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1n3lA)E151 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1n3lA)E151 T0547 395 :GYVDLQ 1n3lA 152 :VVKQVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=71698 # 1tvlA.392.232 read from T0547.t04.many.frag # found chain 1tvlA in template set T0547 392 :FDLGYVDLQ 1tvlA 231 :ADAIFTHSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=71699 # 1kyfA.392.74 read from T0547.t04.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)D393 (1kyfA)N767 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1kyfA)Q769 because E (beta_S) conformation "forbidden" or filtered. T0547 392 :F 1kyfA 766 :L T0547 394 :L 1kyfA 768 :L T0547 396 :YVDLQ 1kyfA 770 :TKPVD Number of specific fragments extracted= 3 number of extra gaps= 2 total=71702 # 1d3yA.392.145 read from T0547.t04.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)D393 (1d3yA)N215 because L (left) conformation "forbidden" or filtered. T0547 392 :F 1d3yA 214 :H T0547 394 :LGYVDLQ 1d3yA 216 :CILVSLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=71704 # 2bvlA.392.235 read from T0547.t04.many.frag # found chain 2bvlA in template set Warning: unaligning (T0547)F392 (2bvlA)S236 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (2bvlA)D239 because P (beta_P) conformation "forbidden" or filtered. T0547 393 :DL 2bvlA 237 :GN T0547 396 :YVDLQ 2bvlA 240 :VRNFG Number of specific fragments extracted= 2 number of extra gaps= 2 total=71706 # 1l8aA.392.708 read from T0547.t04.many.frag # found chain 1l8aA in template set T0547 392 :FDLGYVDLQ 1l8aA 709 :IRKGIYKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71707 # 1pprM.392.187 read from T0547.t04.many.frag # found chain 1pprM in template set Warning: unaligning (T0547)D398 (1pprM)P194 because P (beta_P) conformation "forbidden" or filtered. T0547 392 :FDLGYV 1pprM 188 :SDVYMK T0547 399 :LQ 1pprM 195 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=71709 # 1a62.393.19 read from T0547.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)D398 (1a62)N25 because L (left) conformation "forbidden" or filtered. T0547 393 :DLGYV 1a62 20 :NMGLE T0547 399 :LQD 1a62 26 :LAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=71711 # 1nnlA.393.209 read from T0547.t04.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)G395 (1nnlA)Y212 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1nnlA)D215 because E (beta_S) conformation "forbidden" or filtered. T0547 393 :DL 1nnlA 210 :KW T0547 396 :YV 1nnlA 213 :IT T0547 399 :LQD 1nnlA 216 :FVE Number of specific fragments extracted= 3 number of extra gaps= 2 total=71714 # 1r9jA.393.537 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)G395 (1r9jA)S538 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y396 (1r9jA)V539 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1r9jA)D544 because L (left) conformation "forbidden" or filtered. T0547 393 :DL 1r9jA 536 :AY T0547 397 :VDLQ 1r9jA 540 :VDVP Number of specific fragments extracted= 2 number of extra gaps= 2 total=71716 # 1alu.393.128 read from T0547.t04.many.frag # found chain 1alu in template set T0547 393 :DLGYVDLQD 1alu 127 :QKKAKNLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71717 # 2bvlA.393.236 read from T0547.t04.many.frag # found chain 2bvlA in template set T0547 393 :DLGYVDLQD 2bvlA 237 :GNDVRNFGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71718 # 1rdqE.393.160 read from T0547.t04.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)D393 (1rdqE)D161 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V397 (1rdqE)R165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1rdqE)K168 because Y (epsilon') conformation "forbidden" or filtered. T0547 394 :LGY 1rdqE 162 :LIY T0547 398 :DL 1rdqE 166 :DL T0547 401 :D 1rdqE 169 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=71721 # 1izmA.393.112 read from T0547.t04.many.frag # found chain 1izmA in template set T0547 393 :DLGYVDLQD 1izmA 111 :GLAQPELAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71722 # 1pa7A.393.28 read from T0547.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)G395 (1pa7A)N31 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)V397 (1pa7A)T33 because G (3-10) conformation "forbidden" or filtered. T0547 393 :DL 1pa7A 29 :QL T0547 396 :Y 1pa7A 32 :L T0547 398 :DLQD 1pa7A 34 :KIEQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=71725 # 1pprM.393.188 read from T0547.t04.many.frag # found chain 1pprM in template set T0547 393 :DLGYVDLQD 1pprM 189 :DVYMKPLPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71726 # 1mc2A.393.47 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 393 :DLGYVDLQD 1mc2A 1049 :KCCYKKLTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71727 # 1wdpA.393.312 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 393 :DLGYVDLQD 1wdpA 313 :TAGYYNLND Number of specific fragments extracted= 1 number of extra gaps= 0 total=71728 # 2bkxA.393.165 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)G395 (2bkxA)Y168 because G (3-10) conformation "forbidden" or filtered. T0547 393 :DL 2bkxA 166 :AR T0547 396 :YVDLQD 2bkxA 169 :FPSIDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=71730 # 2bduA.393.276 read from T0547.t04.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)D398 (2bduA)K282 because L (left) conformation "forbidden" or filtered. T0547 393 :DLGYV 2bduA 277 :DIVLV T0547 399 :LQD 2bduA 283 :EES Number of specific fragments extracted= 2 number of extra gaps= 1 total=71732 # 1va6A.393.355 read from T0547.t04.many.frag # found chain 1va6A in template set Warning: unaligning (T0547)L399 (1va6A)A362 because D (zeta) conformation "forbidden" or filtered. T0547 393 :DLGYVD 1va6A 356 :WCALAD T0547 400 :QD 1va6A 363 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71734 # 1tvlA.393.233 read from T0547.t04.many.frag # found chain 1tvlA in template set Warning: unaligning (T0547)G395 (1tvlA)I234 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1tvlA)S240 because Y (epsilon') conformation "forbidden" or filtered. T0547 393 :DL 1tvlA 232 :DA T0547 396 :YVDLQ 1tvlA 235 :FTHSN Number of specific fragments extracted= 2 number of extra gaps= 2 total=71736 # 1w33A.393.109 read from T0547.t04.many.frag # found chain 1w33A in template set Warning: unaligning (T0547)D398 (1w33A)G184 because S (epsilon) conformation "forbidden" or filtered. T0547 393 :DLGYV 1w33A 179 :ELIQN T0547 399 :LQD 1w33A 185 :VEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=71738 # 1tbfA.393.228 read from T0547.t04.many.frag # found chain 1tbfA in training set Warning: unaligning (T0547)D398 (1tbfA)N745 because D (zeta) conformation "forbidden" or filtered. T0547 393 :DLGYV 1tbfA 740 :RKNQF T0547 399 :LQD 1tbfA 746 :LED Number of specific fragments extracted= 2 number of extra gaps= 1 total=71740 # 1x38A.393.177 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)V397 (1x38A)G182 because S (epsilon) conformation "forbidden" or filtered. T0547 393 :DLGY 1x38A 178 :PGLQ T0547 398 :DLQD 1x38A 183 :DVPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=71742 # 1n3lA.393.149 read from T0547.t04.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE in next template residue (1n3lA)E151 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1n3lA)E151 Warning: unaligning (T0547)D398 (1n3lA)Q155 because N (gamma') conformation "forbidden" or filtered. T0547 395 :GYV 1n3lA 152 :VVK T0547 399 :LQD 1n3lA 156 :VEH Number of specific fragments extracted= 2 number of extra gaps= 2 total=71744 # 1oygA.393.369 read from T0547.t04.many.frag # found chain 1oygA in training set T0547 393 :DLGYVDLQD 1oygA 396 :LVLKMDLDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71745 # 1crzA.393.39 read from T0547.t04.many.frag # found chain 1crzA in template set T0547 393 :DLGYVDLQD 1crzA 46 :KFNPLDRAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71746 # 1l5aA.393.279 read from T0547.t04.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)G395 (1l5aA)L282 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1l5aA)Q288 because L (left) conformation "forbidden" or filtered. T0547 393 :DL 1l5aA 280 :PL T0547 396 :YVDLQ 1l5aA 283 :RLSAQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=71748 # 1cczA.393.60 read from T0547.t04.many.frag # found chain 1cczA in training set T0547 393 :DLGYVDLQD 1cczA 61 :SLTIYNLTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71749 # 1jidA.393.108 read from T0547.t04.many.frag # found chain 1jidA in training set T0547 393 :DLGYVDLQD 1jidA 109 :AEMIPKLKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=71750 # 1cqyA.393.5 read from T0547.t04.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)G395 (1cqyA)V425 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1cqyA)N428 because L (left) conformation "forbidden" or filtered. T0547 393 :DL 1cqyA 423 :TI T0547 396 :YV 1cqyA 426 :VK T0547 399 :LQD 1cqyA 429 :VPT Number of specific fragments extracted= 3 number of extra gaps= 2 total=71753 # 1yovA.393.250 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 393 :DLGYVDLQD 1yovA 248 :RQGILKNEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=71754 # 1gxyA.393.90 read from T0547.t04.many.frag # found chain 1gxyA in training set T0547 393 :DLGYVDLQD 1gxyA 91 :REFKENPGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71755 # 1d3yA.393.146 read from T0547.t04.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)D393 (1d3yA)N215 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1d3yA)S220 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1d3yA)K222 because L (left) conformation "forbidden" or filtered. T0547 394 :LGYV 1d3yA 216 :CILV T0547 399 :L 1d3yA 221 :L T0547 401 :D 1d3yA 223 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=71758 # 1mkfA.393.16 read from T0547.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)G395 (1mkfA)Q19 because Y (epsilon') conformation "forbidden" or filtered. T0547 393 :DL 1mkfA 17 :ST T0547 396 :YVDLQD 1mkfA 20 :SVDLSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=71760 # 1gsa.393.194 read from T0547.t04.many.frag # found chain 1gsa in template set Warning: unaligning (T0547)G395 (1gsa)A197 because E (beta_S) conformation "forbidden" or filtered. T0547 393 :DL 1gsa 195 :CM T0547 396 :YVDLQD 1gsa 198 :QNYLPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=71762 # 1a62.394.20 read from T0547.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)D398 (1a62)N25 because L (left) conformation "forbidden" or filtered. T0547 394 :LGYV 1a62 21 :MGLE T0547 399 :LQDR 1a62 26 :LARM Number of specific fragments extracted= 2 number of extra gaps= 1 total=71764 # 1r9jA.394.538 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)L394 (1r9jA)Y537 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y396 (1r9jA)V539 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1r9jA)D541 because E (beta_S) conformation "forbidden" or filtered. T0547 395 :G 1r9jA 538 :S T0547 397 :V 1r9jA 540 :V T0547 399 :LQDR 1r9jA 542 :VPDL Number of specific fragments extracted= 3 number of extra gaps= 3 total=71767 # 1nnlA.394.210 read from T0547.t04.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)G395 (1nnlA)Y212 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1nnlA)D215 because E (beta_S) conformation "forbidden" or filtered. T0547 394 :L 1nnlA 211 :W T0547 396 :YV 1nnlA 213 :IT T0547 399 :LQDR 1nnlA 216 :FVEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=71770 # 1gsa.394.195 read from T0547.t04.many.frag # found chain 1gsa in template set T0547 394 :LGYVDLQDR 1gsa 196 :MAQNYLPAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=71771 # 1pprM.394.189 read from T0547.t04.many.frag # found chain 1pprM in template set Warning: unaligning (T0547)D401 (1pprM)G197 because T (delta_L) conformation "forbidden" or filtered. T0547 394 :LGYVDLQ 1pprM 190 :VYMKPLP T0547 402 :R 1pprM 198 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=71773 # 1izmA.394.113 read from T0547.t04.many.frag # found chain 1izmA in template set T0547 394 :LGYVDLQDR 1izmA 112 :LAQPELAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71774 # 1alu.394.129 read from T0547.t04.many.frag # found chain 1alu in template set Warning: unaligning (T0547)Q400 (1alu)D134 because P (beta_P) conformation "forbidden" or filtered. T0547 394 :LGYVDL 1alu 128 :KKAKNL T0547 401 :DR 1alu 135 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=71776 # 1wdpA.394.313 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 394 :LGYVDLQDR 1wdpA 314 :AGYYNLNDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71777 # 1va6A.394.356 read from T0547.t04.many.frag # found chain 1va6A in template set T0547 394 :LGYVDLQDR 1va6A 357 :CALADAPEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=71778 1u5kA expands to /projects/compbio/data/pdb/1u5k.pdb.gz 1u5kA:# 1u5kA.394.74 read from T0547.t04.many.frag # adding 1u5kA to template set # found chain 1u5kA in template set T0547 394 :LGYVDLQDR 1u5kA 75 :VLEGALPTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71779 # 1mc2A.394.48 read from T0547.t04.many.frag # found chain 1mc2A in training set Warning: unaligning (T0547)R402 (1mc2A)C1061 because Y (epsilon') conformation "forbidden" or filtered. T0547 394 :LGYVDLQD 1mc2A 1050 :CCYKKLTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=71780 # 1rdqE.394.161 read from T0547.t04.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)G395 (1rdqE)I163 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1rdqE)D166 because D (zeta) conformation "forbidden" or filtered. T0547 394 :L 1rdqE 162 :L T0547 396 :YV 1rdqE 164 :YR T0547 399 :LQDR 1rdqE 167 :LKPE Number of specific fragments extracted= 3 number of extra gaps= 2 total=71783 # 2ajtA.394.179 read from T0547.t04.many.frag # found chain 2ajtA in template set Warning: unaligning (T0547)Y396 (2ajtA)G182 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (2ajtA)N184 because P (beta_P) conformation "forbidden" or filtered. T0547 394 :LG 2ajtA 180 :RF T0547 397 :V 2ajtA 183 :D T0547 399 :LQDR 2ajtA 185 :MREV Number of specific fragments extracted= 3 number of extra gaps= 2 total=71786 # 1pa7A.394.29 read from T0547.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)G395 (1pa7A)N31 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)V397 (1pa7A)T33 because G (3-10) conformation "forbidden" or filtered. T0547 394 :L 1pa7A 30 :L T0547 396 :Y 1pa7A 32 :L T0547 398 :DLQDR 1pa7A 34 :KIEQL Number of specific fragments extracted= 3 number of extra gaps= 2 total=71789 # 1w33A.394.110 read from T0547.t04.many.frag # found chain 1w33A in template set T0547 394 :LGYVDLQDR 1w33A 180 :LIQNGVENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71790 # 1gtkA.394.110 read from T0547.t04.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)R402 (1gtkA)L119 because P (beta_P) conformation "forbidden" or filtered. T0547 394 :LGYVDLQD 1gtkA 111 :NNYDSLDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=71791 1yewC expands to /projects/compbio/data/pdb/1yew.pdb.gz 1yewC:# 1yewC.394.113 read from T0547.t04.many.frag # adding 1yewC to template set # found chain 1yewC in template set Warning: unaligning (T0547)G395 (1yewC)R115 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1yewC)N118 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1yewC)A121 because D (zeta) conformation "forbidden" or filtered. T0547 394 :L 1yewC 114 :T T0547 396 :YV 1yewC 116 :DR T0547 399 :LQ 1yewC 119 :LA T0547 402 :R 1yewC 122 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=71795 # 1tbfA.394.229 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 394 :LGYVDLQDR 1tbfA 741 :KNQFNLEDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71796 # 1jg1A.394.147 read from T0547.t04.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)D398 (1jg1A)G152 because S (epsilon) conformation "forbidden" or filtered. T0547 394 :LGYV 1jg1A 148 :DGSK T0547 399 :LQDR 1jg1A 153 :FPPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=71798 # 1tvlA.394.234 read from T0547.t04.many.frag # found chain 1tvlA in template set Warning: unaligning (T0547)D401 (1tvlA)S240 because Y (epsilon') conformation "forbidden" or filtered. T0547 394 :LGYVDLQ 1tvlA 233 :AIFTHSN T0547 402 :R 1tvlA 241 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=71800 # 2bkxA.394.166 read from T0547.t04.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)G395 (2bkxA)Y168 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (2bkxA)V175 because P (beta_P) conformation "forbidden" or filtered. T0547 394 :L 2bkxA 167 :R T0547 396 :YVDLQD 2bkxA 169 :FPSIDS Number of specific fragments extracted= 2 number of extra gaps= 2 total=71802 # 2bvlA.394.237 read from T0547.t04.many.frag # found chain 2bvlA in template set Warning: unaligning (T0547)G395 (2bvlA)D239 because P (beta_P) conformation "forbidden" or filtered. T0547 394 :L 2bvlA 238 :N T0547 396 :YVDLQDR 2bvlA 240 :VRNFGEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=71804 # 1m55A.394.163 read from T0547.t04.many.frag # found chain 1m55A in training set Warning: unaligning (T0547)G395 (1m55A)A165 because Y (epsilon') conformation "forbidden" or filtered. T0547 394 :L 1m55A 164 :W T0547 396 :YVDLQDR 1m55A 166 :WTNLDEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=71806 # 1oygA.394.370 read from T0547.t04.many.frag # found chain 1oygA in training set T0547 394 :LGYVDLQDR 1oygA 397 :VLKMDLDPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=71807 # 1gxyA.394.91 read from T0547.t04.many.frag # found chain 1gxyA in training set T0547 394 :LGYVDLQDR 1gxyA 92 :EFKENPGQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=71808 # 1mg4A.394.73 read from T0547.t04.many.frag # found chain 1mg4A in training set Warning: unaligning (T0547)G395 (1mg4A)K116 because P (beta_P) conformation "forbidden" or filtered. T0547 394 :L 1mg4A 115 :K T0547 396 :YVDLQDR 1mg4A 117 :ISSLDQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=71810 # 1ofcX.394.134 read from T0547.t04.many.frag # found chain 1ofcX in template set Warning: unaligning (T0547)Q400 (1ofcX)E828 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1ofcX)G829 because T (delta_L) conformation "forbidden" or filtered. T0547 394 :LGYVDL 1ofcX 822 :NIAKDV T0547 402 :R 1ofcX 830 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=71812 # 1ls1A.394.241 read from T0547.t04.many.frag # found chain 1ls1A in training set T0547 394 :LGYVDLQDR 1ls1A 242 :LVLTKLDGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71813 # 1ylhA.394.500 read from T0547.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)G395 (1ylhA)I482 because E (beta_S) conformation "forbidden" or filtered. T0547 394 :L 1ylhA 481 :A T0547 396 :YVDLQDR 1ylhA 483 :PKALPGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=71815 # 1n3lA.394.150 read from T0547.t04.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE at template residue (1n3lA)E151 T0547 395 :GYVDLQDR 1n3lA 152 :VVKQVEHP Number of specific fragments extracted= 1 number of extra gaps= 1 total=71816 # 1a62.395.21 read from T0547.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)D398 (1a62)N25 because L (left) conformation "forbidden" or filtered. T0547 395 :GYV 1a62 22 :GLE T0547 399 :LQDRS 1a62 26 :LARMR Number of specific fragments extracted= 2 number of extra gaps= 1 total=71818 # 1r9jA.395.539 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)G395 (1r9jA)S538 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1r9jA)D544 because L (left) conformation "forbidden" or filtered. T0547 396 :YVDLQ 1r9jA 539 :VVDVP T0547 402 :RS 1r9jA 545 :LQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=71820 # 1gsa.395.196 read from T0547.t04.many.frag # found chain 1gsa in template set T0547 395 :GYVDLQDRS 1gsa 197 :AQNYLPAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71821 # 1pprM.395.190 read from T0547.t04.many.frag # found chain 1pprM in template set Warning: unaligning (T0547)D401 (1pprM)G197 because T (delta_L) conformation "forbidden" or filtered. T0547 395 :GYVDLQ 1pprM 191 :YMKPLP T0547 402 :RS 1pprM 198 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=71823 # 1u5kA.395.75 read from T0547.t04.many.frag # found chain 1u5kA in template set Warning: unaligning (T0547)D398 (1u5kA)A79 because E (beta_S) conformation "forbidden" or filtered. T0547 395 :GYV 1u5kA 76 :LEG T0547 399 :LQDRS 1u5kA 80 :LPTLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=71825 # 1tbfA.395.230 read from T0547.t04.many.frag # found chain 1tbfA in training set Warning: unaligning (T0547)Y396 (1tbfA)Q743 because G (3-10) conformation "forbidden" or filtered. T0547 395 :G 1tbfA 742 :N T0547 397 :VDLQDRS 1tbfA 744 :FNLEDPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=71827 # 1jg1A.395.148 read from T0547.t04.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)G395 (1jg1A)G149 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)V397 (1jg1A)K151 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1jg1A)G152 because S (epsilon) conformation "forbidden" or filtered. T0547 396 :Y 1jg1A 150 :S T0547 399 :LQDRS 1jg1A 153 :FPPKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=71829 # 1wdpA.395.314 read from T0547.t04.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)D398 (1wdpA)N318 because E (beta_S) conformation "forbidden" or filtered. T0547 395 :GYV 1wdpA 315 :GYY T0547 399 :LQDRS 1wdpA 319 :LNDRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=71831 # 1gtkA.395.111 read from T0547.t04.many.frag # found chain 1gtkA in training set T0547 395 :GYVDLQDRS 1gtkA 112 :NYDSLDALP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71832 # 1izmA.395.114 read from T0547.t04.many.frag # found chain 1izmA in template set Warning: unaligning (T0547)S403 (1izmA)K121 because Y (epsilon') conformation "forbidden" or filtered. T0547 395 :GYVDLQDR 1izmA 113 :AQPELAKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=71833 # 1oygA.395.371 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)G395 (1oygA)L398 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1oygA)D403 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDL 1oygA 399 :KMDL T0547 401 :DRS 1oygA 404 :PND Number of specific fragments extracted= 2 number of extra gaps= 2 total=71835 # 2ajtA.395.180 read from T0547.t04.many.frag # found chain 2ajtA in template set Warning: unaligning (T0547)G395 (2ajtA)F181 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y396 (2ajtA)G182 because S (epsilon) conformation "forbidden" or filtered. T0547 397 :VDLQDRS 2ajtA 183 :DNMREVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=71836 # 1tzvA.395.69 read from T0547.t04.many.frag # found chain 1tzvA in training set T0547 395 :GYVDLQDRS 1tzvA 70 :EKWSLNRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71837 # 1yewC.395.114 read from T0547.t04.many.frag # found chain 1yewC in template set Warning: unaligning (T0547)S403 (1yewC)T123 because P (beta_P) conformation "forbidden" or filtered. T0547 395 :GYVDLQDR 1yewC 115 :RDRNLAAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=71838 # 1va6A.395.357 read from T0547.t04.many.frag # found chain 1va6A in template set T0547 395 :GYVDLQDRS 1va6A 358 :ALADAPEMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71839 # 1nnlA.395.211 read from T0547.t04.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)D398 (1nnlA)D215 because E (beta_S) conformation "forbidden" or filtered. T0547 395 :GYV 1nnlA 212 :YIT T0547 399 :LQDRS 1nnlA 216 :FVELL Number of specific fragments extracted= 2 number of extra gaps= 1 total=71841 # 1rlr.395.467 read from T0547.t04.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)D401 (1rlr)N474 because E (beta_S) conformation "forbidden" or filtered. T0547 395 :GYVDLQ 1rlr 468 :NLGAIN T0547 402 :RS 1rlr 475 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=71843 # 1mkfA.395.18 read from T0547.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)D398 (1mkfA)D22 because D (zeta) conformation "forbidden" or filtered. T0547 395 :GYV 1mkfA 19 :QSV T0547 399 :LQDRS 1mkfA 23 :LSQIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=71845 # 1alu.395.130 read from T0547.t04.many.frag # found chain 1alu in template set T0547 395 :GYVDLQDRS 1alu 129 :KAKNLDAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=71846 # 1ls1A.395.242 read from T0547.t04.many.frag # found chain 1ls1A in training set T0547 395 :GYVDLQDRS 1ls1A 243 :VLTKLDGDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71847 # 1w33A.395.111 read from T0547.t04.many.frag # found chain 1w33A in template set T0547 395 :GYVDLQDRS 1w33A 181 :IQNGVENLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71848 # 1pa7A.395.30 read from T0547.t04.many.frag # found chain 1pa7A in training set T0547 395 :GYVDLQDRS 1pa7A 31 :NLTKIEQLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=71849 # 1ofcX.395.135 read from T0547.t04.many.frag # found chain 1ofcX in template set Warning: unaligning (T0547)V397 (1ofcX)K825 because G (3-10) conformation "forbidden" or filtered. T0547 395 :GY 1ofcX 823 :IA T0547 398 :DLQDRS 1ofcX 826 :DVEGKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=71851 # 1q2lA.395.651 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 395 :GYVDLQDRS 1q2lA 675 :RRKILPSIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=71852 # 1m55A.395.164 read from T0547.t04.many.frag # found chain 1m55A in training set Warning: unaligning (T0547)G395 (1m55A)A165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1m55A)Y172 because G (3-10) conformation "forbidden" or filtered. T0547 396 :YVDLQD 1m55A 166 :WTNLDE T0547 403 :S 1m55A 173 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=71854 # 2c0hA.395.276 read from T0547.t04.many.frag # found chain 2c0hA in training set Warning: unaligning (T0547)G395 (2c0hA)F291 because G (3-10) conformation "forbidden" or filtered. T0547 396 :YVDLQDRS 2c0hA 292 :KHSFSNFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=71855 # 1mg4A.395.74 read from T0547.t04.many.frag # found chain 1mg4A in training set Warning: unaligning (T0547)G395 (1mg4A)K116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V397 (1mg4A)S118 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1mg4A)S119 because E (beta_S) conformation "forbidden" or filtered. T0547 396 :Y 1mg4A 117 :I T0547 399 :LQDRS 1mg4A 120 :LDQLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=71857 # 2evrA.395.164 read from T0547.t04.many.frag # found chain 2evrA in template set T0547 395 :GYVDLQDRS 2evrA 153 :QPITIAELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71858 # 1bf5A.395.197 read from T0547.t04.many.frag # found chain 1bf5A in template set Warning: unaligning (T0547)G395 (1bf5A)L347 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1bf5A)K350 because L (left) conformation "forbidden" or filtered. T0547 396 :YV 1bf5A 348 :LV T0547 399 :LQDRS 1bf5A 351 :LQELN Number of specific fragments extracted= 2 number of extra gaps= 2 total=71860 # 1ylhA.395.501 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 395 :GYVDLQDRS 1ylhA 482 :IPKALPGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71861 # 1a62.396.22 read from T0547.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)D398 (1a62)N25 because L (left) conformation "forbidden" or filtered. T0547 396 :YV 1a62 23 :LE T0547 399 :LQDRSN 1a62 26 :LARMRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=71863 # 1rlr.396.468 read from T0547.t04.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)V397 (1rlr)G470 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1rlr)N474 because E (beta_S) conformation "forbidden" or filtered. T0547 396 :Y 1rlr 469 :L T0547 398 :DLQ 1rlr 471 :AIN T0547 402 :RSN 1rlr 475 :LDE Number of specific fragments extracted= 3 number of extra gaps= 2 total=71866 # 1u5kA.396.76 read from T0547.t04.many.frag # found chain 1u5kA in template set Warning: unaligning (T0547)D398 (1u5kA)A79 because E (beta_S) conformation "forbidden" or filtered. T0547 396 :YV 1u5kA 77 :EG T0547 399 :LQDRSN 1u5kA 80 :LPTLAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71868 # 1gsa.396.197 read from T0547.t04.many.frag # found chain 1gsa in template set T0547 396 :YVDLQDRSN 1gsa 198 :QNYLPAIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71869 # 1tzvA.396.70 read from T0547.t04.many.frag # found chain 1tzvA in training set T0547 396 :YVDLQDRSN 1tzvA 71 :KWSLNRLSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71870 # 1pprM.396.191 read from T0547.t04.many.frag # found chain 1pprM in template set T0547 396 :YVDLQDRSN 1pprM 192 :MKPLPGVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71871 # 1gtkA.396.112 read from T0547.t04.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)V397 (1gtkA)D114 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1gtkA)S115 because Y (epsilon') conformation "forbidden" or filtered. T0547 396 :Y 1gtkA 113 :Y T0547 399 :LQDRSN 1gtkA 116 :LDALPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=71873 # 1mkfA.396.19 read from T0547.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)R402 (1mkfA)I26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (1mkfA)K27 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1mkfA)R28 because L (left) conformation "forbidden" or filtered. T0547 396 :YVDLQD 1mkfA 20 :SVDLSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=71874 # 2evrA.396.165 read from T0547.t04.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)D398 (2evrA)T156 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YV 2evrA 154 :PI T0547 399 :LQDRSN 2evrA 157 :IAELVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=71876 # 1yewC.396.115 read from T0547.t04.many.frag # found chain 1yewC in template set T0547 396 :YVDLQDRSN 1yewC 116 :DRNLAALTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71877 # 1q2lA.396.652 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 396 :YVDLQDRSN 1q2lA 676 :RKILPSITL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71878 # 1tbfA.396.231 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 396 :YVDLQDRSN 1tbfA 743 :QFNLEDPHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71879 # 1r9jA.396.540 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 396 :YVDLQDRSN 1r9jA 539 :VVDVPDLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71880 # 1wdpA.396.315 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 396 :YVDLQDRSN 1wdpA 316 :YYNLNDRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71881 # 1mg4A.396.75 read from T0547.t04.many.frag # found chain 1mg4A in training set Warning: unaligning (T0547)V397 (1mg4A)S118 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1mg4A)E125 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :Y 1mg4A 117 :I T0547 398 :DLQDRS 1mg4A 119 :SLDQLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=71883 # 7odcA.396.368 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 396 :YVDLQDRSN 7odcA 369 :RCNLPEMHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71884 # 1jg1A.396.149 read from T0547.t04.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)D398 (1jg1A)G152 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1jg1A)P158 because C (cis) conformation "forbidden" or filtered. T0547 396 :YV 1jg1A 150 :SK T0547 399 :LQDRS 1jg1A 153 :FPPKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=71886 # 1va6A.396.358 read from T0547.t04.many.frag # found chain 1va6A in template set Warning: unaligning (T0547)D401 (1va6A)E364 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQ 1va6A 359 :LADAP T0547 402 :RSN 1va6A 365 :MSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=71888 # 1ls1A.396.243 read from T0547.t04.many.frag # found chain 1ls1A in training set Warning: unaligning (T0547)D398 (1ls1A)K246 because L (left) conformation "forbidden" or filtered. T0547 396 :YV 1ls1A 244 :LT T0547 399 :LQDRSN 1ls1A 247 :LDGDAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=71890 1at0 expands to /projects/compbio/data/pdb/1at0.pdb.gz 1at0:Warning: there is no chain 1at0 will retry with 1at0A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1at0.396.14 read from T0547.t04.many.frag # adding 1at0 to template set # found chain 1at0 in template set Warning: unaligning (T0547)R402 (1at0)L278 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQD 1at0 272 :RKPLGE T0547 403 :SN 1at0 279 :SI Number of specific fragments extracted= 2 number of extra gaps= 1 total=71892 # 1pa7A.396.31 read from T0547.t04.many.frag # found chain 1pa7A in training set T0547 396 :YVDLQDRSN 1pa7A 32 :LTKIEQLCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71893 # 2ajtA.396.181 read from T0547.t04.many.frag # found chain 2ajtA in template set Warning: unaligning (T0547)Y396 (2ajtA)G182 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (2ajtA)E187 because T (delta_L) conformation "forbidden" or filtered. T0547 397 :VDLQ 2ajtA 183 :DNMR T0547 402 :RSN 2ajtA 188 :VAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=71895 # 1izmA.396.115 read from T0547.t04.many.frag # found chain 1izmA in template set Warning: unaligning (T0547)N404 (1izmA)G122 because S (epsilon) conformation "forbidden" or filtered. T0547 396 :YVDLQDRS 1izmA 114 :QPELAKEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=71896 # 1alu.396.131 read from T0547.t04.many.frag # found chain 1alu in template set T0547 396 :YVDLQDRSN 1alu 130 :AKNLDAITT Number of specific fragments extracted= 1 number of extra gaps= 0 total=71897 # 2ew0A.396.57 read from T0547.t04.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)Y396 (2ew0A)D58 because L (left) conformation "forbidden" or filtered. T0547 397 :VDLQDRSN 2ew0A 59 :IDADNVNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=71898 # 1ofcX.396.136 read from T0547.t04.many.frag # found chain 1ofcX in template set Warning: unaligning (T0547)D401 (1ofcX)G829 because T (delta_L) conformation "forbidden" or filtered. T0547 396 :YVDLQ 1ofcX 824 :AKDVE T0547 402 :RSN 1ofcX 830 :KTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=71900 # 1w33A.396.112 read from T0547.t04.many.frag # found chain 1w33A in template set T0547 396 :YVDLQDRSN 1w33A 182 :QNGVENLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=71901 # 1m55A.396.165 read from T0547.t04.many.frag # found chain 1m55A in training set T0547 396 :YVDLQDRSN 1m55A 166 :WTNLDEYKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71902 # 1bf5A.396.198 read from T0547.t04.many.frag # found chain 1bf5A in template set Warning: unaligning (T0547)D398 (1bf5A)K350 because L (left) conformation "forbidden" or filtered. T0547 396 :YV 1bf5A 348 :LV T0547 399 :LQDRSN 1bf5A 351 :LQELNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=71904 1wy6A expands to /projects/compbio/data/pdb/1wy6.pdb.gz 1wy6A:# 1wy6A.396.67 read from T0547.t04.many.frag # adding 1wy6A to template set # found chain 1wy6A in template set T0547 396 :YVDLQDRSN 1wy6A 69 :YFDLDKCQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=71905 # 1a62.397.23 read from T0547.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)D398 (1a62)N25 because L (left) conformation "forbidden" or filtered. T0547 397 :V 1a62 24 :E T0547 399 :LQDRSNA 1a62 26 :LARMRKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=71907 # 1tzvA.397.71 read from T0547.t04.many.frag # found chain 1tzvA in training set Warning: unaligning (T0547)D398 (1tzvA)S73 because E (beta_S) conformation "forbidden" or filtered. T0547 397 :V 1tzvA 72 :W T0547 399 :LQDRSNA 1tzvA 74 :LNRLSVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=71909 # 1rlr.397.469 read from T0547.t04.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)D401 (1rlr)N474 because E (beta_S) conformation "forbidden" or filtered. T0547 397 :VDLQ 1rlr 470 :GAIN T0547 402 :RSNA 1rlr 475 :LDEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=71911 # 1mkfA.397.20 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 397 :VDLQDRSNA 1mkfA 21 :VDLSQIKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71912 # 7odcA.397.369 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A405 (7odcA)G378 because T (delta_L) conformation "forbidden" or filtered. T0547 397 :VDLQDRSN 7odcA 370 :CNLPEMHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=71913 # 1gtkA.397.113 read from T0547.t04.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)D398 (1gtkA)S115 because Y (epsilon') conformation "forbidden" or filtered. T0547 397 :V 1gtkA 114 :D T0547 399 :LQDRSNA 1gtkA 116 :LDALPAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=71915 # 1q2lA.397.653 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 397 :VDLQDRSNA 1q2lA 677 :KILPSITLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71916 # 1pprM.397.192 read from T0547.t04.many.frag # found chain 1pprM in template set Warning: unaligning (T0547)D401 (1pprM)G197 because T (delta_L) conformation "forbidden" or filtered. T0547 397 :VDLQ 1pprM 193 :KPLP T0547 402 :RSNA 1pprM 198 :VSAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=71918 # 1u5kA.397.77 read from T0547.t04.many.frag # found chain 1u5kA in template set T0547 397 :VDLQDRSNA 1u5kA 78 :GALPTLAEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=71919 # 1gsa.397.198 read from T0547.t04.many.frag # found chain 1gsa in template set Warning: unaligning (T0547)A405 (1gsa)G207 because S (epsilon) conformation "forbidden" or filtered. T0547 397 :VDLQDRSN 1gsa 199 :NYLPAIKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=71920 # 2evrA.397.166 read from T0547.t04.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)A405 (2evrA)G163 because T (delta_L) conformation "forbidden" or filtered. T0547 397 :VDLQDRSN 2evrA 155 :ITIAELVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=71921 # 1at0.397.15 read from T0547.t04.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)R402 (1at0)L278 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1at0)G281 because T (delta_L) conformation "forbidden" or filtered. T0547 397 :VDLQD 1at0 273 :KPLGE T0547 403 :SN 1at0 279 :SI Number of specific fragments extracted= 2 number of extra gaps= 2 total=71923 # 1tbfA.397.232 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 397 :VDLQDRSNA 1tbfA 744 :FNLEDPHQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71924 # 1yewC.397.116 read from T0547.t04.many.frag # found chain 1yewC in template set Warning: unaligning (T0547)D398 (1yewC)N118 because N (gamma') conformation "forbidden" or filtered. T0547 397 :V 1yewC 117 :R T0547 399 :LQDRSNA 1yewC 119 :LAALTPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=71926 # 1mg4A.397.76 read from T0547.t04.many.frag # found chain 1mg4A in training set Warning: unaligning (T0547)A405 (1mg4A)G126 because T (delta_L) conformation "forbidden" or filtered. T0547 397 :VDLQDRSN 1mg4A 118 :SSLDQLVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=71927 # 1jg1A.397.150 read from T0547.t04.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)N404 (1jg1A)P158 because C (cis) conformation "forbidden" or filtered. T0547 397 :VDLQDRS 1jg1A 151 :KGFPPKA T0547 405 :A 1jg1A 159 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=71929 # 1va6A.397.359 read from T0547.t04.many.frag # found chain 1va6A in template set T0547 397 :VDLQDRSNA 1va6A 360 :ADAPEMSSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=71930 # 1ls1A.397.244 read from T0547.t04.many.frag # found chain 1ls1A in training set Warning: unaligning (T0547)D398 (1ls1A)K246 because L (left) conformation "forbidden" or filtered. T0547 397 :V 1ls1A 245 :T T0547 399 :LQDRSNA 1ls1A 247 :LDGDARG Number of specific fragments extracted= 2 number of extra gaps= 1 total=71932 # 2ajtA.397.182 read from T0547.t04.many.frag # found chain 2ajtA in template set T0547 397 :VDLQDRSNA 2ajtA 183 :DNMREVAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=71933 # 1wdpA.397.316 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 397 :VDLQDRSNA 1wdpA 317 :YNLNDRDGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=71934 # 1pa7A.397.32 read from T0547.t04.many.frag # found chain 1pa7A in training set T0547 397 :VDLQDRSNA 1pa7A 33 :TKIEQLCSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71935 # 1i8dA.397.70 read from T0547.t04.many.frag # found chain 1i8dA in template set T0547 397 :VDLQDRSNA 1i8dA 71 :TNLGDLKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71936 # 1wl8A.397.166 read from T0547.t04.many.frag # found chain 1wl8A in training set T0547 397 :VDLQDRSNA 1wl8A 167 :PEVAHTEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=71937 # 1r9jA.397.541 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 397 :VDLQDRSNA 1r9jA 540 :VDVPDLQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=71938 # 1knwA.397.358 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A405 (1knwA)G367 because T (delta_L) conformation "forbidden" or filtered. T0547 397 :VDLQDRSN 1knwA 359 :RALPEVKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=71939 # 1l5aA.397.283 read from T0547.t04.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)R402 (1l5aA)T289 because Y (epsilon') conformation "forbidden" or filtered. T0547 397 :VDLQD 1l5aA 284 :LSAQQ T0547 403 :SNA 1l5aA 290 :SLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=71941 # 1izmA.397.116 read from T0547.t04.many.frag # found chain 1izmA in template set Warning: unaligning (T0547)N404 (1izmA)G122 because S (epsilon) conformation "forbidden" or filtered. T0547 397 :VDLQDRS 1izmA 115 :PELAKEK T0547 405 :A 1izmA 123 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=71943 # 1wy6A.397.68 read from T0547.t04.many.frag # found chain 1wy6A in template set T0547 397 :VDLQDRSNA 1wy6A 70 :FDLDKCQNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=71944 # 2c0hA.397.278 read from T0547.t04.many.frag # found chain 2c0hA in training set Warning: unaligning (T0547)S403 (2c0hA)R299 because L (left) conformation "forbidden" or filtered. T0547 397 :VDLQDR 2c0hA 293 :HSFSNF T0547 404 :NA 2c0hA 300 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=71946 # 1xgkA.397.276 read from T0547.t04.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)S403 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xgkA)P309 T0547 397 :VDLQDR 1xgkA 277 :FPLPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=71947 # 7odcA.398.370 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N404 (7odcA)V377 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (7odcA)G378 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :DLQDRS 7odcA 371 :NLPEMH T0547 406 :E 7odcA 379 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=71949 # 1a62.398.24 read from T0547.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0547)S403 (1a62)R30 because P (beta_P) conformation "forbidden" or filtered. T0547 398 :DLQDR 1a62 25 :NLARM T0547 404 :NAE 1a62 31 :KQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=71951 # 1rlr.398.470 read from T0547.t04.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)D401 (1rlr)N474 because E (beta_S) conformation "forbidden" or filtered. T0547 398 :DLQ 1rlr 471 :AIN T0547 402 :RSNAE 1rlr 475 :LDELD Number of specific fragments extracted= 2 number of extra gaps= 1 total=71953 # 1tzvA.398.72 read from T0547.t04.many.frag # found chain 1tzvA in training set T0547 398 :DLQDRSNAE 1tzvA 73 :SLNRLSVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71954 # 1mkfA.398.21 read from T0547.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)S403 (1mkfA)K27 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1mkfA)R28 because L (left) conformation "forbidden" or filtered. T0547 398 :DLQDR 1mkfA 22 :DLSQI T0547 405 :AE 1mkfA 29 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=71956 # 1q2lA.398.654 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 398 :DLQDRSNAE 1q2lA 678 :ILPSITLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71957 # 1gtkA.398.114 read from T0547.t04.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)D398 (1gtkA)S115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1gtkA)A121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1gtkA)G122 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQDRS 1gtkA 116 :LDALP T0547 406 :E 1gtkA 123 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=71959 # 2evrA.398.167 read from T0547.t04.many.frag # found chain 2evrA in template set T0547 398 :DLQDRSNAE 2evrA 156 :TIAELVAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71960 # 1u5kA.398.78 read from T0547.t04.many.frag # found chain 1u5kA in template set Warning: unaligning (T0547)D398 (1u5kA)A79 because E (beta_S) conformation "forbidden" or filtered. T0547 399 :LQDRSNAE 1u5kA 80 :LPTLAEPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=71961 # 1pprM.398.193 read from T0547.t04.many.frag # found chain 1pprM in template set Warning: unaligning (T0547)D401 (1pprM)G197 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :DLQ 1pprM 194 :PLP T0547 402 :RSNAE 1pprM 198 :VSAQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=71963 # 1at0.398.16 read from T0547.t04.many.frag # found chain 1at0 in template set T0547 398 :DLQDRSNAE 1at0 274 :PLGELSIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71964 # 1tbfA.398.233 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 398 :DLQDRSNAE 1tbfA 745 :NLEDPHQKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71965 # 1gsa.398.199 read from T0547.t04.many.frag # found chain 1gsa in template set Warning: unaligning (T0547)A405 (1gsa)G207 because S (epsilon) conformation "forbidden" or filtered. T0547 398 :DLQDRSN 1gsa 200 :YLPAIKD T0547 406 :E 1gsa 208 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=71967 # 1jg1A.398.151 read from T0547.t04.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)S403 (1jg1A)A157 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1jg1A)P158 because C (cis) conformation "forbidden" or filtered. T0547 398 :DLQDR 1jg1A 152 :GFPPK T0547 405 :AE 1jg1A 159 :YD Number of specific fragments extracted= 2 number of extra gaps= 1 total=71969 # 1knwA.398.359 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 398 :DLQDRSNAE 1knwA 360 :ALPEVKAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71970 # 1yewC.398.117 read from T0547.t04.many.frag # found chain 1yewC in template set T0547 398 :DLQDRSNAE 1yewC 118 :NLAALTPRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71971 # 1wl8A.398.167 read from T0547.t04.many.frag # found chain 1wl8A in training set Warning: unaligning (T0547)R402 (1wl8A)T172 because P (beta_P) conformation "forbidden" or filtered. T0547 398 :DLQD 1wl8A 168 :EVAH T0547 403 :SNAE 1wl8A 173 :EKGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=71973 # 1mg4A.398.77 read from T0547.t04.many.frag # found chain 1mg4A in training set T0547 398 :DLQDRSNAE 1mg4A 119 :SLDQLVEGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71974 # 1va6A.398.360 read from T0547.t04.many.frag # found chain 1va6A in template set T0547 398 :DLQDRSNAE 1va6A 361 :DAPEMSSSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71975 # 1vqoL.398.96 read from T0547.t04.many.frag # found chain 1vqoL in template set Warning: unaligning (T0547)N404 (1vqoL)D102 because G (3-10) conformation "forbidden" or filtered. T0547 398 :DLQDRS 1vqoL 96 :VVEEAD T0547 405 :AE 1vqoL 103 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=71977 # 2ajtA.398.183 read from T0547.t04.many.frag # found chain 2ajtA in template set T0547 398 :DLQDRSNAE 2ajtA 184 :NMREVAVTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=71978 # 1pa7A.398.33 read from T0547.t04.many.frag # found chain 1pa7A in training set T0547 398 :DLQDRSNAE 1pa7A 34 :KIEQLCSGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=71979 # 1ls1A.398.245 read from T0547.t04.many.frag # found chain 1ls1A in training set Warning: unaligning (T0547)D398 (1ls1A)K246 because L (left) conformation "forbidden" or filtered. T0547 399 :LQDRSNAE 1ls1A 247 :LDGDARGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=71980 # 1o7qA.398.108 read from T0547.t04.many.frag # found chain 1o7qA in training set Warning: unaligning (T0547)N404 (1o7qA)R194 because P (beta_P) conformation "forbidden" or filtered. T0547 398 :DLQDRS 1o7qA 188 :KIKPEK T0547 405 :AE 1o7qA 195 :WQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=71982 # 1i8dA.398.71 read from T0547.t04.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)A405 (1i8dA)G79 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :DLQDRSN 1i8dA 72 :NLGDLKV T0547 406 :E 1i8dA 80 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=71984 # 1l5aA.398.284 read from T0547.t04.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)D398 (1l5aA)S285 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1l5aA)Q287 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1l5aA)Q288 because L (left) conformation "forbidden" or filtered. T0547 399 :L 1l5aA 286 :A T0547 402 :RSNAE 1l5aA 289 :TSLGN Number of specific fragments extracted= 2 number of extra gaps= 2 total=71986 # 1wdpA.398.317 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 398 :DLQDRSNAE 1wdpA 318 :NLNDRDGYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71987 2be1A expands to /projects/compbio/data/pdb/2be1.pdb.gz 2be1A:# 2be1A.398.2 read from T0547.t04.many.frag # adding 2be1A to template set # found chain 2be1A in template set Warning: unaligning (T0547)R402 (2be1A)L117 because Y (epsilon') conformation "forbidden" or filtered. T0547 398 :DLQD 2be1A 113 :SLNE T0547 403 :SNAE 2be1A 118 :SLSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=71989 # 1wy6A.398.69 read from T0547.t04.many.frag # found chain 1wy6A in template set T0547 398 :DLQDRSNAE 1wy6A 71 :DLDKCQNLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=71990 # 1m2oA.398.596 read from T0547.t04.many.frag # found chain 1m2oA in template set T0547 398 :DLQDRSNAE 1m2oA 597 :SVFNNSPDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71991 # 7odcA.399.371 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D401 (7odcA)E374 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (7odcA)V377 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQ 7odcA 372 :LP T0547 402 :RS 7odcA 375 :MH T0547 405 :AEI 7odcA 378 :GDW Number of specific fragments extracted= 3 number of extra gaps= 2 total=71994 # 1mkfA.399.22 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 399 :LQDRSNAEI 1mkfA 23 :LSQIKRGDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71995 # 1rlr.399.471 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 399 :LQDRSNAEI 1rlr 472 :INNLDELDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=71996 # 1tzvA.399.73 read from T0547.t04.many.frag # found chain 1tzvA in training set T0547 399 :LQDRSNAEI 1tzvA 74 :LNRLSVVDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=71997 # 2evrA.399.168 read from T0547.t04.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)R402 (2evrA)L160 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (2evrA)G163 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQD 2evrA 157 :IAE T0547 403 :SN 2evrA 161 :VA T0547 406 :EI 2evrA 164 :DL Number of specific fragments extracted= 3 number of extra gaps= 2 total=72000 # 1a62.399.25 read from T0547.t04.many.frag # found chain 1a62 in training set T0547 399 :LQDRSNAEI 1a62 26 :LARMRKQDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72001 # 1knwA.399.360 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E406 (1knwA)D368 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQDRSNA 1knwA 361 :LPEVKAG T0547 407 :I 1knwA 369 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=72003 # 1wl8A.399.168 read from T0547.t04.many.frag # found chain 1wl8A in training set T0547 399 :LQDRSNAEI 1wl8A 169 :VAHTEKGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72004 # 1gsa.399.200 read from T0547.t04.many.frag # found chain 1gsa in template set T0547 399 :LQDRSNAEI 1gsa 201 :LPAIKDGDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72005 # 1gtkA.399.115 read from T0547.t04.many.frag # found chain 1gtkA in training set T0547 399 :LQDRSNAEI 1gtkA 116 :LDALPAGSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72006 # 1at0.399.17 read from T0547.t04.many.frag # found chain 1at0 in template set T0547 399 :LQDRSNAEI 1at0 275 :LGELSIGDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72007 # 1q2lA.399.655 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 399 :LQDRSNAEI 1q2lA 679 :LPSITLKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72008 # 1pprM.399.194 read from T0547.t04.many.frag # found chain 1pprM in template set T0547 399 :LQDRSNAEI 1pprM 195 :LPGVSAQQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72009 # 1u5kA.399.79 read from T0547.t04.many.frag # found chain 1u5kA in template set T0547 399 :LQDRSNAEI 1u5kA 80 :LPTLAEPER Number of specific fragments extracted= 1 number of extra gaps= 0 total=72010 # 1tbfA.399.234 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 399 :LQDRSNAEI 1tbfA 746 :LEDPHQKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72011 # 1vqoL.399.97 read from T0547.t04.many.frag # found chain 1vqoL in template set T0547 399 :LQDRSNAEI 1vqoL 97 :VEEADDADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=72012 # 1jg1A.399.152 read from T0547.t04.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)S403 (1jg1A)A157 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1jg1A)P158 because C (cis) conformation "forbidden" or filtered. T0547 399 :LQDR 1jg1A 153 :FPPK T0547 405 :AEI 1jg1A 159 :YDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=72014 # 1yewC.399.118 read from T0547.t04.many.frag # found chain 1yewC in template set Warning: unaligning (T0547)I407 (1yewC)E127 because G (3-10) conformation "forbidden" or filtered. T0547 399 :LQDRSNAE 1yewC 119 :LAALTPRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=72015 # 1mg4A.399.78 read from T0547.t04.many.frag # found chain 1mg4A in training set Warning: unaligning (T0547)N404 (1mg4A)E125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1mg4A)G126 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQDRS 1mg4A 120 :LDQLV T0547 406 :EI 1mg4A 127 :ES Number of specific fragments extracted= 2 number of extra gaps= 1 total=72017 # 1olzA.399.200 read from T0547.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)S403 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1olzA)G205 Warning: unaligning (T0547)A405 (1olzA)D207 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1olzA)D208 because P (beta_P) conformation "forbidden" or filtered. T0547 404 :N 1olzA 206 :E T0547 407 :I 1olzA 209 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=72019 # 1qqfA.399.59 read from T0547.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0547)R402 (1qqfA)R1072 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQD 1qqfA 1069 :FNN T0547 403 :SNAEI 1qqfA 1073 :PPSTW Number of specific fragments extracted= 2 number of extra gaps= 1 total=72021 # 1i8dA.399.72 read from T0547.t04.many.frag # found chain 1i8dA in template set T0547 399 :LQDRSNAEI 1i8dA 73 :LGDLKVGDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=72022 # 2ajtA.399.184 read from T0547.t04.many.frag # found chain 2ajtA in template set Warning: unaligning (T0547)D401 (2ajtA)E187 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I407 (2ajtA)G193 because Y (epsilon') conformation "forbidden" or filtered. T0547 399 :LQ 2ajtA 185 :MR T0547 402 :RSNAE 2ajtA 188 :VAVTD Number of specific fragments extracted= 2 number of extra gaps= 2 total=72024 # 2be1A.399.3 read from T0547.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)R402 (2be1A)L117 because Y (epsilon') conformation "forbidden" or filtered. T0547 399 :LQD 2be1A 114 :LNE T0547 403 :SNAEI 2be1A 118 :SLSDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=72026 # 2bwrA.399.288 read from T0547.t04.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)Q400 (2bwrA)T290 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (2bwrA)K293 because L (left) conformation "forbidden" or filtered. T0547 399 :L 2bwrA 289 :L T0547 401 :DR 2bwrA 291 :NK T0547 404 :NAEI 2bwrA 294 :VGDI Number of specific fragments extracted= 3 number of extra gaps= 2 total=72029 # 1pa7A.399.34 read from T0547.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)A405 (1pa7A)G41 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQDRSN 1pa7A 35 :IEQLCS T0547 406 :EI 1pa7A 42 :AA Number of specific fragments extracted= 2 number of extra gaps= 1 total=72031 # 1wa5C.399.298 read from T0547.t04.many.frag # found chain 1wa5C in template set Warning: unaligning (T0547)Q400 (1wa5C)S300 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1wa5C)K304 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :L 1wa5C 299 :I T0547 401 :DRS 1wa5C 301 :NQP T0547 405 :AEI 1wa5C 305 :YDI Number of specific fragments extracted= 3 number of extra gaps= 2 total=72034 # 1nw1A.399.184 read from T0547.t04.many.frag # found chain 1nw1A in template set Warning: unaligning (T0547)D401 (1nw1A)I187 because Y (epsilon') conformation "forbidden" or filtered. T0547 399 :LQ 1nw1A 185 :VP T0547 402 :RSNAEI 1nw1A 188 :WKEPDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=72036 # 1m2oA.399.597 read from T0547.t04.many.frag # found chain 1m2oA in template set T0547 399 :LQDRSNAEI 1m2oA 598 :VFNNSPDET Number of specific fragments extracted= 1 number of extra gaps= 0 total=72037 # 1o7qA.399.109 read from T0547.t04.many.frag # found chain 1o7qA in training set Warning: unaligning (T0547)Q400 (1o7qA)K190 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1o7qA)E192 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :L 1o7qA 189 :I T0547 401 :D 1o7qA 191 :P T0547 403 :SNAEI 1o7qA 193 :KRWQD Number of specific fragments extracted= 3 number of extra gaps= 2 total=72040 # 7odcA.400.372 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D401 (7odcA)E374 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (7odcA)V377 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (7odcA)G378 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :Q 7odcA 373 :P T0547 402 :RS 7odcA 375 :MH T0547 406 :EIL 7odcA 379 :DWM Number of specific fragments extracted= 3 number of extra gaps= 2 total=72043 # 1mkfA.400.23 read from T0547.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)N404 (1mkfA)R28 because L (left) conformation "forbidden" or filtered. T0547 400 :QDRS 1mkfA 24 :SQIK T0547 405 :AEIL 1mkfA 29 :GDEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=72045 # 1knwA.400.361 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)R402 (1knwA)V364 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1knwA)G367 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QD 1knwA 362 :PE T0547 403 :SN 1knwA 365 :KA T0547 406 :EIL 1knwA 368 :DYL Number of specific fragments extracted= 3 number of extra gaps= 2 total=72048 # 2evrA.400.169 read from T0547.t04.many.frag # found chain 2evrA in template set T0547 400 :QDRSNAEIL 2evrA 158 :AELVAGDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72049 # 1rlr.400.472 read from T0547.t04.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)D401 (1rlr)N474 because E (beta_S) conformation "forbidden" or filtered. T0547 400 :Q 1rlr 473 :N T0547 402 :RSNAEIL 1rlr 475 :LDELDEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=72051 # 2be1A.400.4 read from T0547.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)R402 (2be1A)L117 because Y (epsilon') conformation "forbidden" or filtered. T0547 400 :QD 2be1A 115 :NE T0547 403 :SNAEIL 2be1A 118 :SLSDIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=72053 # 1a62.400.26 read from T0547.t04.many.frag # found chain 1a62 in training set T0547 400 :QDRSNAEIL 1a62 27 :ARMRKQDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=72054 # 1wl8A.400.169 read from T0547.t04.many.frag # found chain 1wl8A in training set T0547 400 :QDRSNAEIL 1wl8A 170 :AHTEKGEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72055 # 2bwrA.400.289 read from T0547.t04.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)Q400 (2bwrA)T290 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (2bwrA)V294 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2bwrA)D296 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :DRS 2bwrA 291 :NKK T0547 405 :A 2bwrA 295 :G T0547 407 :IL 2bwrA 297 :II Number of specific fragments extracted= 3 number of extra gaps= 3 total=72058 # 1tzvA.400.74 read from T0547.t04.many.frag # found chain 1tzvA in training set T0547 400 :QDRSNAEIL 1tzvA 75 :NRLSVVDRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=72059 # 1tbfA.400.235 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 400 :QDRSNAEIL 1tbfA 747 :EDPHQKELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72060 # 1gtkA.400.116 read from T0547.t04.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)S403 (1gtkA)P120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1gtkA)G122 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QDR 1gtkA 117 :DAL T0547 404 :N 1gtkA 121 :A T0547 406 :EIL 1gtkA 123 :SIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=72063 # 1qqfA.400.60 read from T0547.t04.many.frag # found chain 1qqfA in training set T0547 400 :QDRSNAEIL 1qqfA 1070 :NNRPPSTWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72064 # 1at0.400.18 read from T0547.t04.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)R402 (1at0)L278 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1at0)G281 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QD 1at0 276 :GE T0547 403 :SN 1at0 279 :SI T0547 406 :EIL 1at0 282 :DRV Number of specific fragments extracted= 3 number of extra gaps= 2 total=72067 # 1gsa.400.201 read from T0547.t04.many.frag # found chain 1gsa in template set Warning: unaligning (T0547)N404 (1gsa)D206 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1gsa)G207 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1gsa)D208 because N (gamma') conformation "forbidden" or filtered. T0547 400 :QDRS 1gsa 202 :PAIK T0547 407 :IL 1gsa 209 :KR Number of specific fragments extracted= 2 number of extra gaps= 1 total=72069 # 1pprM.400.195 read from T0547.t04.many.frag # found chain 1pprM in template set T0547 400 :QDRSNAEIL 1pprM 196 :PGVSAQQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72070 # 1i8dA.400.73 read from T0547.t04.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)A405 (1i8dA)G79 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QDRSN 1i8dA 74 :GDLKV T0547 406 :EIL 1i8dA 80 :DWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=72072 1txkA expands to /projects/compbio/data/pdb/1txk.pdb.gz 1txkA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1txkA.400.118 read from T0547.t04.many.frag # adding 1txkA to template set # found chain 1txkA in template set Warning: unaligning (T0547)D401 (1txkA)S141 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1txkA)K144 because E (beta_S) conformation "forbidden" or filtered. T0547 400 :Q 1txkA 140 :N T0547 402 :RS 1txkA 142 :KD T0547 405 :AEIL 1txkA 145 :NDEI Number of specific fragments extracted= 3 number of extra gaps= 2 total=72075 # 1olzA.400.201 read from T0547.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)S403 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1olzA)G205 Warning: unaligning (T0547)N404 (1olzA)E206 because P (beta_P) conformation "forbidden" or filtered. T0547 405 :AEIL 1olzA 207 :DDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72076 # 1nw1A.400.185 read from T0547.t04.many.frag # found chain 1nw1A in template set Warning: unaligning (T0547)D401 (1nw1A)I187 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1nw1A)E190 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :Q 1nw1A 186 :P T0547 402 :RS 1nw1A 188 :WK T0547 405 :AEIL 1nw1A 191 :PDYL Number of specific fragments extracted= 3 number of extra gaps= 2 total=72079 # 1wpoA.400.112 read from T0547.t04.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)A405 (1wpoA)D118 because D (zeta) conformation "forbidden" or filtered. T0547 400 :QDRSN 1wpoA 113 :SPLQP T0547 406 :EIL 1wpoA 119 :KVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=72081 # 1q2lA.400.656 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 400 :QDRSNAEIL 1q2lA 680 :PSITLKEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72082 # 1l5aA.400.286 read from T0547.t04.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)D401 (1l5aA)Q288 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1l5aA)T289 because Y (epsilon') conformation "forbidden" or filtered. T0547 400 :Q 1l5aA 287 :Q T0547 403 :SNAEIL 1l5aA 290 :SLGNYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=72084 # 1z53A.400.99 read from T0547.t04.many.frag # found chain 1z53A in template set T0547 400 :QDRSNAEIL 1z53A 100 :PWISSGDLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72085 # 1m2oA.400.598 read from T0547.t04.many.frag # found chain 1m2oA in template set T0547 400 :QDRSNAEIL 1m2oA 599 :FNNSPDETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72086 # 1hq0A.400.196 read from T0547.t04.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)D401 (1hq0A)G917 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1hq0A)S920 because Y (epsilon') conformation "forbidden" or filtered. T0547 400 :Q 1hq0A 916 :E T0547 402 :RS 1hq0A 918 :IM T0547 405 :AEIL 1hq0A 921 :NDFL Number of specific fragments extracted= 3 number of extra gaps= 2 total=72089 1eteA expands to /projects/compbio/data/pdb/1ete.pdb.gz 1eteA:# 1eteA.400.38 read from T0547.t04.many.frag # adding 1eteA to template set # found chain 1eteA in template set T0547 400 :QDRSNAEIL 1eteA 39 :QDDELCGGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72090 # 1ekqA.400.190 read from T0547.t04.many.frag # found chain 1ekqA in training set Warning: unaligning (T0547)N404 (1ekqA)G195 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ekqA)L199 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)L199 T0547 400 :QDRS 1ekqA 191 :TKVT T0547 405 :A 1ekqA 196 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=72092 # 1hqsA.400.294 read from T0547.t04.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)A405 (1hqsA)F300 because E (beta_S) conformation "forbidden" or filtered. T0547 400 :QDRSN 1hqsA 295 :TRPNE T0547 406 :EIL 1hqsA 301 :DVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=72094 # 1epuA.400.394 read from T0547.t04.many.frag # found chain 1epuA in template set T0547 400 :QDRSNAEIL 1epuA 395 :QKISAYDKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72095 # 7odcA.401.373 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A405 (7odcA)G378 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (7odcA)D379 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :DRSN 7odcA 374 :EMHV T0547 407 :ILT 7odcA 380 :WML Number of specific fragments extracted= 2 number of extra gaps= 1 total=72097 # 1knwA.401.362 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 401 :DRSNAEILT 1knwA 363 :EVKAGDYLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72098 # 1mkfA.401.24 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 401 :DRSNAEILT 1mkfA 25 :QIKRGDEIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=72099 # 2be1A.401.5 read from T0547.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)R402 (2be1A)L117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (2be1A)L119 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (2be1A)S120 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :D 2be1A 116 :E T0547 403 :S 2be1A 118 :S T0547 406 :EILT 2be1A 121 :DILI Number of specific fragments extracted= 3 number of extra gaps= 2 total=72102 # 2bwrA.401.290 read from T0547.t04.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)S403 (2bwrA)K293 because L (left) conformation "forbidden" or filtered. T0547 401 :DR 2bwrA 291 :NK T0547 404 :NAEILT 2bwrA 294 :VGDIIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=72104 # 2evrA.401.170 read from T0547.t04.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)A405 (2evrA)G163 because T (delta_L) conformation "forbidden" or filtered. T0547 401 :DRSN 2evrA 159 :ELVA T0547 406 :EILT 2evrA 164 :DLVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=72106 # 1txkA.401.119 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 401 :DRSNAEILT 1txkA 141 :SKDKNDEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72107 # 1qqfA.401.61 read from T0547.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0547)N404 (1qqfA)P1074 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :DRS 1qqfA 1071 :NRP T0547 405 :AEILT 1qqfA 1075 :STWLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=72109 # 1rlr.401.473 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 401 :DRSNAEILT 1rlr 474 :NLDELDELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72110 # 1wl8A.401.170 read from T0547.t04.many.frag # found chain 1wl8A in training set T0547 401 :DRSNAEILT 1wl8A 171 :HTEKGEEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72111 # 1tbfA.401.236 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 401 :DRSNAEILT 1tbfA 748 :DPHQKELFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72112 # 1olzA.401.202 read from T0547.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)S403 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1olzA)G205 Warning: unaligning (T0547)N404 (1olzA)E206 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1olzA)D207 because P (beta_P) conformation "forbidden" or filtered. T0547 406 :EILT 1olzA 208 :DRVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=72113 # 1a62.401.27 read from T0547.t04.many.frag # found chain 1a62 in training set T0547 401 :DRSNAEILT 1a62 28 :RMRKQDIIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72114 # 1at0.401.19 read from T0547.t04.many.frag # found chain 1at0 in template set T0547 401 :DRSNAEILT 1at0 277 :ELSIGDRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72115 # 1euvA.401.45 read from T0547.t04.many.frag # found chain 1euvA in training set Warning: unaligning (T0547)D401 (1euvA)R446 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSNAEILT 1euvA 447 :RWLNDTII Number of specific fragments extracted= 1 number of extra gaps= 1 total=72116 # 1b12A.401.48 read from T0547.t04.many.frag # found chain 1b12A in template set Warning: unaligning (T0547)D401 (1b12A)H124 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1b12A)P125 because P (beta_P) conformation "forbidden" or filtered. T0547 403 :SNAEILT 1b12A 126 :KRGDIVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=72117 # 1ei6A.401.331 read from T0547.t04.many.frag # found chain 1ei6A in template set T0547 401 :DRSNAEILT 1ei6A 333 :EDRIGDLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72118 # 1i8dA.401.74 read from T0547.t04.many.frag # found chain 1i8dA in template set T0547 401 :DRSNAEILT 1i8dA 75 :DLKVGDWVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=72119 # 1wpoA.401.113 read from T0547.t04.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)S403 (1wpoA)Q116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1wpoA)D118 because D (zeta) conformation "forbidden" or filtered. T0547 401 :DR 1wpoA 114 :PL T0547 404 :N 1wpoA 117 :P T0547 406 :EILT 1wpoA 119 :KVVE Number of specific fragments extracted= 3 number of extra gaps= 2 total=72122 # 1gtkA.401.117 read from T0547.t04.many.frag # found chain 1gtkA in training set T0547 401 :DRSNAEILT 1gtkA 118 :ALPAGSIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72123 # 1nw1A.401.186 read from T0547.t04.many.frag # found chain 1nw1A in template set Warning: unaligning (T0547)R402 (1nw1A)W188 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :D 1nw1A 187 :I T0547 403 :SNAEILT 1nw1A 189 :KEPDYLC Number of specific fragments extracted= 2 number of extra gaps= 1 total=72125 # 1ekqA.401.191 read from T0547.t04.many.frag # found chain 1ekqA in training set Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ekqA)L199 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)L199 T0547 401 :DRSNA 1ekqA 192 :KVTGA T0547 409 :T 1ekqA 200 :L Number of specific fragments extracted= 2 number of extra gaps= 0 total=72127 # 1tzvA.401.75 read from T0547.t04.many.frag # found chain 1tzvA in training set T0547 401 :DRSNAEILT 1tzvA 76 :RLSVVDRNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72128 2b5nA expands to /projects/compbio/data/pdb/2b5n.pdb.gz 2b5nA:# 2b5nA.401.31 read from T0547.t04.many.frag # adding 2b5nA to template set # found chain 2b5nA in template set T0547 401 :DRSNAEILT 2b5nA 418 :NRETYDTLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72129 # 1hq0A.401.197 read from T0547.t04.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)N404 (1hq0A)S920 because Y (epsilon') conformation "forbidden" or filtered. T0547 401 :DRS 1hq0A 917 :GIM T0547 405 :AEILT 1hq0A 921 :NDFLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=72131 # 1wkcA.401.98 read from T0547.t04.many.frag # found chain 1wkcA in training set T0547 401 :DRSNAEILT 1wkcA 99 :DPRVLDLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72132 # 1eteA.401.39 read from T0547.t04.many.frag # found chain 1eteA in template set Warning: unaligning (T0547)R402 (1eteA)D41 because D (zeta) conformation "forbidden" or filtered. T0547 401 :D 1eteA 40 :D T0547 403 :SNAEILT 1eteA 42 :ELCGGLW Number of specific fragments extracted= 2 number of extra gaps= 1 total=72134 # 1l5aA.401.230 read from T0547.t04.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)D401 (1l5aA)Q231 because L (left) conformation "forbidden" or filtered. T0547 402 :RSNAEILT 1l5aA 232 :IGWPDALV Number of specific fragments extracted= 1 number of extra gaps= 1 total=72135 # 1y0zA.401.296 read from T0547.t04.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)A405 (1y0zA)G301 because T (delta_L) conformation "forbidden" or filtered. T0547 401 :DRSN 1y0zA 297 :PWQR T0547 406 :EILT 1y0zA 302 :DVLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=72137 # 1tx4A.401.21 read from T0547.t04.many.frag # found chain 1tx4A in training set Warning: unaligning (T0547)R402 (1tx4A)Q59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1tx4A)P63 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :D 1tx4A 58 :E T0547 403 :SNA 1tx4A 60 :EPI T0547 407 :ILT 1tx4A 64 :IVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=72140 # 7odcA.402.374 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 402 :RSNAEILTH 7odcA 375 :MHVGDWMLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72141 # 1knwA.402.363 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)R402 (1knwA)V364 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1knwA)A366 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1knwA)G367 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :S 1knwA 365 :K T0547 406 :EILTH 1knwA 368 :DYLVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=72143 # 1olzA.402.203 read from T0547.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)S403 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1olzA)G205 T0547 404 :NAEILTH 1olzA 206 :EDDRVYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72144 # 1txkA.402.120 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 402 :RSNAEILTH 1txkA 142 :KDKNDEIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72145 # 2be1A.402.6 read from T0547.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)R402 (2be1A)L117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A126 T0547 403 :SNAEILT 2be1A 118 :SLSDILI Number of specific fragments extracted= 1 number of extra gaps= 2 total=72146 # 1mkfA.402.25 read from T0547.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)S403 (1mkfA)K27 because P (beta_P) conformation "forbidden" or filtered. T0547 402 :R 1mkfA 26 :I T0547 404 :NAEILTH 1mkfA 28 :RGDEIQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=72148 # 2evrA.402.171 read from T0547.t04.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)A405 (2evrA)G163 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSN 2evrA 160 :LVA T0547 406 :EILTH 2evrA 164 :DLVFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=72150 # 1qqfA.402.62 read from T0547.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0547)N404 (1qqfA)P1074 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1qqfA)S1075 because P (beta_P) conformation "forbidden" or filtered. T0547 402 :RS 1qqfA 1072 :RP T0547 406 :EILTH 1qqfA 1076 :TWLTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=72152 # 1rlr.402.474 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 402 :RSNAEILTH 1rlr 475 :LDELDELAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72153 # 1at0.402.20 read from T0547.t04.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)N404 (1at0)I280 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H410 (1at0)S286 because Y (epsilon') conformation "forbidden" or filtered. T0547 402 :RS 1at0 278 :LS T0547 405 :AEILT 1at0 281 :GDRVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=72155 # 1y0zA.402.297 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 402 :RSNAEILTH 1y0zA 298 :WQRGDVLLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72156 # 2bwrA.402.291 read from T0547.t04.many.frag # found chain 2bwrA in training set T0547 402 :RSNAEILTH 2bwrA 292 :KKVGDIIGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72157 # 1i8dA.402.75 read from T0547.t04.many.frag # found chain 1i8dA in template set T0547 402 :RSNAEILTH 1i8dA 76 :LKVGDWVNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72158 # 1tbfA.402.237 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 402 :RSNAEILTH 1tbfA 749 :PHQKELFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72159 # 1euvA.402.46 read from T0547.t04.many.frag # found chain 1euvA in training set T0547 402 :RSNAEILTH 1euvA 447 :RWLNDTIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72160 # 1wpoA.402.114 read from T0547.t04.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)A405 (1wpoA)D118 because D (zeta) conformation "forbidden" or filtered. T0547 402 :RSN 1wpoA 115 :LQP T0547 406 :EILTH 1wpoA 119 :KVVEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=72162 # 1b12A.402.49 read from T0547.t04.many.frag # found chain 1b12A in template set Warning: unaligning (T0547)H410 (1b12A)F133 because Y (epsilon') conformation "forbidden" or filtered. T0547 402 :RSNAEILT 1b12A 125 :PKRGDIVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=72163 # 1wl8A.402.171 read from T0547.t04.many.frag # found chain 1wl8A in training set Warning: unaligning (T0547)R402 (1wl8A)T172 because P (beta_P) conformation "forbidden" or filtered. T0547 403 :SNAEILTH 1wl8A 173 :EKGEEILR Number of specific fragments extracted= 1 number of extra gaps= 1 total=72164 # 1ekqA.402.192 read from T0547.t04.many.frag # found chain 1ekqA in training set Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ekqA)L199 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)L199 T0547 402 :RSNA 1ekqA 193 :VTGA T0547 409 :TH 1ekqA 200 :LT Number of specific fragments extracted= 2 number of extra gaps= 0 total=72166 # 1tx4A.402.22 read from T0547.t04.many.frag # found chain 1tx4A in training set T0547 402 :RSNAEILTH 1tx4A 59 :QEPIPIVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72167 # 1ikpA.402.492 read from T0547.t04.many.frag # found chain 1ikpA in training set Warning: unaligning (T0547)A405 (1ikpA)G496 because Y (epsilon') conformation "forbidden" or filtered. T0547 402 :RSN 1ikpA 493 :IRN T0547 406 :EILTH 1ikpA 497 :ALLRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=72169 # 1v6sA.402.205 read from T0547.t04.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)A405 (1v6sA)I209 because E (beta_S) conformation "forbidden" or filtered. T0547 402 :RSN 1v6sA 206 :LPR T0547 406 :EILTH 1v6sA 210 :DRLLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=72171 # 2b5nA.402.32 read from T0547.t04.many.frag # found chain 2b5nA in template set T0547 402 :RSNAEILTH 2b5nA 419 :RETYDTLVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72172 # 1nw1A.402.187 read from T0547.t04.many.frag # found chain 1nw1A in template set T0547 402 :RSNAEILTH 1nw1A 188 :WKEPDYLCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72173 # 2bwrA.402.125 read from T0547.t04.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)S403 (2bwrA)G127 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :R 2bwrA 126 :T T0547 404 :NAEILTH 2bwrA 128 :RADIVGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=72175 # 1gtkA.402.118 read from T0547.t04.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)A405 (1gtkA)G122 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSN 1gtkA 119 :LPA T0547 406 :EILTH 1gtkA 123 :SIVGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=72177 # 1a62.402.28 read from T0547.t04.many.frag # found chain 1a62 in training set T0547 402 :RSNAEILTH 1a62 29 :MRKQDIIFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72178 2bdeA expands to /projects/compbio/data/pdb/2bde.pdb.gz 2bdeA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2bdeA.402.292 read from T0547.t04.many.frag # adding 2bdeA to template set # found chain 2bdeA in template set T0547 402 :RSNAEILTH 2bdeA 293 :VGGDEILYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72179 # 1y93A.402.101 read from T0547.t04.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)R402 (1y93A)H206 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1y93A)T210 because E (beta_S) conformation "forbidden" or filtered. T0547 403 :SNA 1y93A 207 :SGG T0547 407 :ILTH 1y93A 211 :NLFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=72181 # 1pcxA.402.415 read from T0547.t04.many.frag # found chain 1pcxA in template set T0547 402 :RSNAEILTH 1pcxA 532 :KNPNDIVKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72182 # 1knwA.403.364 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N404 (1knwA)A366 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1knwA)G367 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :S 1knwA 365 :K T0547 406 :EILTHL 1knwA 368 :DYLVLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=72184 # 7odcA.403.375 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A405 (7odcA)G378 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SN 7odcA 376 :HV T0547 406 :EILTHL 7odcA 379 :DWMLFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=72186 # 1olzA.403.204 read from T0547.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)S403 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1olzA)G205 Warning: unaligning (T0547)E406 (1olzA)D208 because P (beta_P) conformation "forbidden" or filtered. T0547 404 :NA 1olzA 206 :ED T0547 407 :ILTHL 1olzA 209 :RVYFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=72188 # 2be1A.403.7 read from T0547.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A126 Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A126 T0547 403 :SNAEILT 2be1A 118 :SLSDILI Number of specific fragments extracted= 1 number of extra gaps= 1 total=72189 # 1txkA.403.121 read from T0547.t04.many.frag # found chain 1txkA in template set Warning: unaligning (T0547)E406 (1txkA)D146 because P (beta_P) conformation "forbidden" or filtered. T0547 403 :SNA 1txkA 143 :DKN T0547 407 :ILTHL 1txkA 147 :EIVSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=72191 # 1rlr.403.475 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 403 :SNAEILTHL 1rlr 476 :DELDELAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72192 # 1euvA.403.47 read from T0547.t04.many.frag # found chain 1euvA in training set T0547 403 :SNAEILTHL 1euvA 448 :WLNDTIIEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72193 # 2evrA.403.172 read from T0547.t04.many.frag # found chain 2evrA in template set T0547 403 :SNAEILTHL 2evrA 161 :VAGDLVFFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72194 # 1i8dA.403.76 read from T0547.t04.many.frag # found chain 1i8dA in template set T0547 403 :SNAEILTHL 1i8dA 77 :KVGDWVNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72195 # 1y0zA.403.298 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 403 :SNAEILTHL 1y0zA 299 :QRGDVLLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=72196 # 1wpoA.403.115 read from T0547.t04.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)A405 (1wpoA)D118 because D (zeta) conformation "forbidden" or filtered. T0547 403 :SN 1wpoA 116 :QP T0547 406 :EILTHL 1wpoA 119 :KVVEFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=72198 # 1mkfA.403.26 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 403 :SNAEILTHL 1mkfA 27 :KRGDEIQAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=72199 # 1y93A.403.102 read from T0547.t04.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)N404 (1y93A)G208 because P (beta_P) conformation "forbidden" or filtered. T0547 403 :S 1y93A 207 :S T0547 405 :AEILTHL 1y93A 209 :GTNLFLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=72201 # 2b5nA.403.33 read from T0547.t04.many.frag # found chain 2b5nA in template set T0547 403 :SNAEILTHL 2b5nA 420 :ETYDTLVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72202 # 1a12A.403.170 read from T0547.t04.many.frag # found chain 1a12A in training set T0547 403 :SNAEILTHL 1a12A 179 :SGNDHLVML Number of specific fragments extracted= 1 number of extra gaps= 0 total=72203 # 1qqfA.403.63 read from T0547.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0547)N404 (1qqfA)P1074 because P (beta_P) conformation "forbidden" or filtered. T0547 403 :S 1qqfA 1073 :P T0547 405 :AEILTHL 1qqfA 1075 :STWLTAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=72205 # 1at0.403.21 read from T0547.t04.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)A405 (1at0)G281 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H410 (1at0)S286 because Y (epsilon') conformation "forbidden" or filtered. T0547 403 :SN 1at0 279 :SI T0547 406 :EILT 1at0 282 :DRVL T0547 411 :L 1at0 287 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=72208 # 1pjxA.403.79 read from T0547.t04.many.frag # found chain 1pjxA in training set T0547 403 :SNAEILTHL 1pjxA 80 :RDANQLFVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72209 # 1tbfA.403.238 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 403 :SNAEILTHL 1tbfA 750 :HQKELFLAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=72210 # 1nw1A.403.188 read from T0547.t04.many.frag # found chain 1nw1A in template set T0547 403 :SNAEILTHL 1nw1A 189 :KEPDYLCEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72211 # 1tx4A.403.23 read from T0547.t04.many.frag # found chain 1tx4A in training set T0547 403 :SNAEILTHL 1tx4A 60 :EPIPIVLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72212 # 1b12A.403.50 read from T0547.t04.many.frag # found chain 1b12A in template set Warning: unaligning (T0547)N404 (1b12A)R127 because P (beta_P) conformation "forbidden" or filtered. T0547 403 :S 1b12A 126 :K T0547 405 :AEILTHL 1b12A 128 :GDIVVFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=72214 # 1suuA.403.111 read from T0547.t04.many.frag # found chain 1suuA in training set Warning: unaligning (T0547)E406 (1suuA)A613 because E (beta_S) conformation "forbidden" or filtered. T0547 403 :SNA 1suuA 610 :TDD T0547 407 :ILTHL 1suuA 614 :YLLLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=72216 # 1ekqA.403.193 read from T0547.t04.many.frag # found chain 1ekqA in training set Warning: unaligning (T0547)N404 (1ekqA)G195 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ekqA)L199 Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)L199 T0547 403 :S 1ekqA 194 :T T0547 405 :A 1ekqA 196 :A T0547 409 :THL 1ekqA 200 :LTS Number of specific fragments extracted= 3 number of extra gaps= 1 total=72219 # 1wa5C.403.302 read from T0547.t04.many.frag # found chain 1wa5C in template set T0547 403 :SNAEILTHL 1wa5C 303 :PKYDILVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72220 # 1stmA.403.116 read from T0547.t04.many.frag # found chain 1stmA in template set T0547 403 :SNAEILTHL 1stmA 117 :EEAETILAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72221 # 1v6sA.403.206 read from T0547.t04.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)L411 (1v6sA)G215 because Y (epsilon') conformation "forbidden" or filtered. T0547 403 :SNAEILTH 1v6sA 207 :PRIDRLLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=72222 # 1otjA.403.121 read from T0547.t04.many.frag # found chain 1otjA in template set Warning: unaligning (T0547)A405 (1otjA)G124 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SN 1otjA 122 :TG T0547 406 :EILTHL 1otjA 125 :DTLWTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=72224 # 1wl8A.403.172 read from T0547.t04.many.frag # found chain 1wl8A in training set Warning: unaligning (T0547)N404 (1wl8A)K174 because L (left) conformation "forbidden" or filtered. T0547 403 :S 1wl8A 173 :E T0547 405 :AEILTHL 1wl8A 175 :GEEILRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=72226 # 2bdeA.403.293 read from T0547.t04.many.frag # found chain 2bdeA in template set T0547 403 :SNAEILTHL 2bdeA 294 :GGDEILYIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72227 # 1knwA.404.365 read from T0547.t04.many.frag # found chain 1knwA in template set T0547 404 :NAEILTHLI 1knwA 366 :AGDYLVLHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=72228 # 7odcA.404.376 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A405 (7odcA)G378 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I412 (7odcA)N385 because L (left) conformation "forbidden" or filtered. T0547 404 :N 7odcA 377 :V T0547 406 :EILTHL 7odcA 379 :DWMLFE Number of specific fragments extracted= 2 number of extra gaps= 2 total=72230 # 1rlr.404.476 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 404 :NAEILTHLI 1rlr 477 :ELDELAILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72231 # 2be1A.404.8 read from T0547.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A126 Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A126 T0547 404 :NAEILT 2be1A 119 :LSDILI T0547 412 :I 2be1A 127 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=72233 # 1euvA.404.48 read from T0547.t04.many.frag # found chain 1euvA in training set T0547 404 :NAEILTHLI 1euvA 449 :LNDTIIEFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72234 # 1olzA.404.205 read from T0547.t04.many.frag # found chain 1olzA in template set T0547 404 :NAEILTHLI 1olzA 206 :EDDRVYFFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72235 # 1y93A.404.103 read from T0547.t04.many.frag # found chain 1y93A in training set T0547 404 :NAEILTHLI 1y93A 208 :GGTNLFLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72236 # 1txkA.404.122 read from T0547.t04.many.frag # found chain 1txkA in template set Warning: unaligning (T0547)N404 (1txkA)K144 because E (beta_S) conformation "forbidden" or filtered. T0547 405 :AEILTHLI 1txkA 145 :NDEIVSML Number of specific fragments extracted= 1 number of extra gaps= 1 total=72237 # 1wpoA.404.116 read from T0547.t04.many.frag # found chain 1wpoA in template set T0547 404 :NAEILTHLI 1wpoA 117 :PDKVVEFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72238 # 1wa5C.404.303 read from T0547.t04.many.frag # found chain 1wa5C in template set T0547 404 :NAEILTHLI 1wa5C 304 :KYDILVSKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72239 # 2b5nA.404.34 read from T0547.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)N404 (2b5nA)T421 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (2b5nA)Y422 because P (beta_P) conformation "forbidden" or filtered. T0547 406 :EILTHLI 2b5nA 423 :DTLVLSF Number of specific fragments extracted= 1 number of extra gaps= 1 total=72240 # 1pjxA.404.80 read from T0547.t04.many.frag # found chain 1pjxA in training set T0547 404 :NAEILTHLI 1pjxA 81 :DANQLFVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=72241 # 1tbfA.404.239 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 404 :NAEILTHLI 1tbfA 751 :QKELFLAML Number of specific fragments extracted= 1 number of extra gaps= 0 total=72242 # 1a12A.404.171 read from T0547.t04.many.frag # found chain 1a12A in training set T0547 404 :NAEILTHLI 1a12A 180 :GNDHLVMLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72243 # 1qazA.404.204 read from T0547.t04.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)N404 (1qazA)K208 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1qazA)D209 because D (zeta) conformation "forbidden" or filtered. T0547 406 :EILTHLI 1qazA 210 :DELFRWG Number of specific fragments extracted= 1 number of extra gaps= 1 total=72244 # 1qqfA.404.64 read from T0547.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0547)N404 (1qqfA)P1074 because P (beta_P) conformation "forbidden" or filtered. T0547 405 :AEILTHLI 1qqfA 1075 :STWLTAYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=72245 # 1tx4A.404.24 read from T0547.t04.many.frag # found chain 1tx4A in training set Warning: unaligning (T0547)A405 (1tx4A)I62 because P (beta_P) conformation "forbidden" or filtered. T0547 404 :N 1tx4A 61 :P T0547 406 :EILTHLI 1tx4A 63 :PIVLRET Number of specific fragments extracted= 2 number of extra gaps= 1 total=72247 # 1y0zA.404.299 read from T0547.t04.many.frag # found chain 1y0zA in template set T0547 404 :NAEILTHLI 1y0zA 300 :RGDVLLIDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=72248 # 2evrA.404.173 read from T0547.t04.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)E406 (2evrA)D164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L411 (2evrA)G169 because Y (epsilon') conformation "forbidden" or filtered. T0547 404 :NA 2evrA 162 :AG T0547 407 :ILTH 2evrA 165 :LVFF T0547 412 :I 2evrA 170 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=72251 # 1otsA.404.384 read from T0547.t04.many.frag # found chain 1otsA in template set T0547 404 :NAEILTHLI 1otsA 385 :EAGTFAIAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72252 # 1sg6A.404.286 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 404 :NAEILTHLI 1sg6A 287 :HGECVAIGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=72253 1zsqA expands to /projects/compbio/data/pdb/1zsq.pdb.gz 1zsqA:# 1zsqA.404.430 read from T0547.t04.many.frag # adding 1zsqA to template set # found chain 1zsqA in template set T0547 404 :NAEILTHLI 1zsqA 500 :FNEYFLITI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72254 # 2bmoA.404.405 read from T0547.t04.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)A405 (2bmoA)G407 because Y (epsilon') conformation "forbidden" or filtered. T0547 404 :N 2bmoA 406 :I T0547 406 :EILTHLI 2bmoA 408 :ETSYRGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=72256 # 1izoA.404.363 read from T0547.t04.many.frag # found chain 1izoA in template set T0547 404 :NAEILTHLI 1izoA 364 :PGEGITIEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72257 # 1i8dA.404.77 read from T0547.t04.many.frag # found chain 1i8dA in template set T0547 404 :NAEILTHLI 1i8dA 78 :VGDWVNVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=72258 # 1gxrA.404.234 read from T0547.t04.many.frag # found chain 1gxrA in training set Warning: unaligning (T0547)A405 (1gxrA)G669 because S (epsilon) conformation "forbidden" or filtered. T0547 404 :N 1gxrA 668 :T T0547 406 :EILTHLI 1gxrA 670 :EWLAVGM Number of specific fragments extracted= 2 number of extra gaps= 1 total=72260 # 1mkfA.404.27 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 404 :NAEILTHLI 1mkfA 28 :RGDEIQAHC Number of specific fragments extracted= 1 number of extra gaps= 0 total=72261 # 1pjr.404.350 read from T0547.t04.many.frag # found chain 1pjr in template set T0547 404 :NAEILTHLI 1pjr 351 :YRDFAVLYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72262 # 1pcxA.404.417 read from T0547.t04.many.frag # found chain 1pcxA in template set T0547 404 :NAEILTHLI 1pcxA 534 :PNDIVKFST Number of specific fragments extracted= 1 number of extra gaps= 0 total=72263 # 1o7qA.404.114 read from T0547.t04.many.frag # found chain 1o7qA in training set T0547 404 :NAEILTHLI 1o7qA 194 :RWQDISMMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72264 # 1knwA.405.366 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A405 (1knwA)G367 because T (delta_L) conformation "forbidden" or filtered. T0547 406 :EILTHLIT 1knwA 368 :DYLVLHDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=72265 # 7odcA.405.377 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E406 (7odcA)D379 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I412 (7odcA)N385 because L (left) conformation "forbidden" or filtered. T0547 405 :A 7odcA 378 :G T0547 407 :ILTHL 7odcA 380 :WMLFE T0547 413 :T 7odcA 386 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=72268 # 1rlr.405.477 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 405 :AEILTHLIT 1rlr 478 :LDELAILAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72269 # 2be1A.405.9 read from T0547.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A126 Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A126 T0547 405 :AEILT 2be1A 120 :SDILI T0547 412 :IT 2be1A 127 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=72271 # 1euvA.405.49 read from T0547.t04.many.frag # found chain 1euvA in training set T0547 405 :AEILTHLIT 1euvA 450 :NDTIIEFFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=72272 # 1y93A.405.104 read from T0547.t04.many.frag # found chain 1y93A in training set T0547 405 :AEILTHLIT 1y93A 209 :GTNLFLTAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72273 # 1wa5C.405.304 read from T0547.t04.many.frag # found chain 1wa5C in template set T0547 405 :AEILTHLIT 1wa5C 305 :YDILVSKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72274 # 1tbfA.405.240 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 405 :AEILTHLIT 1tbfA 752 :KELFLAMLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=72275 # 2b5nA.405.35 read from T0547.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)I412 (2b5nA)F429 because Y (epsilon') conformation "forbidden" or filtered. T0547 405 :AEILTHL 2b5nA 422 :YDTLVLS T0547 413 :T 2b5nA 430 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=72277 # 1tx4A.405.25 read from T0547.t04.many.frag # found chain 1tx4A in training set T0547 405 :AEILTHLIT 1tx4A 62 :IPIVLRETV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72278 # 1qazA.405.205 read from T0547.t04.many.frag # found chain 1qazA in training set T0547 405 :AEILTHLIT 1qazA 209 :DDELFRWGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72279 # 1wpoA.405.117 read from T0547.t04.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)A405 (1wpoA)D118 because D (zeta) conformation "forbidden" or filtered. T0547 406 :EILTHLIT 1wpoA 119 :KVVEFLSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=72280 # 1txkA.405.123 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 405 :AEILTHLIT 1txkA 145 :NDEIVSMLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72281 # 2bmoA.405.406 read from T0547.t04.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)A405 (2bmoA)G407 because Y (epsilon') conformation "forbidden" or filtered. T0547 406 :EILTHLIT 2bmoA 408 :ETSYRGFY Number of specific fragments extracted= 1 number of extra gaps= 1 total=72282 # 1otsA.405.385 read from T0547.t04.many.frag # found chain 1otsA in template set T0547 405 :AEILTHLIT 1otsA 386 :AGTFAIAGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=72283 # 1olzA.405.206 read from T0547.t04.many.frag # found chain 1olzA in template set T0547 405 :AEILTHLIT 1olzA 207 :DDRVYFFFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72284 # 1izoA.405.364 read from T0547.t04.many.frag # found chain 1izoA in template set T0547 405 :AEILTHLIT 1izoA 365 :GEGITIEVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=72285 # 1a12A.405.172 read from T0547.t04.many.frag # found chain 1a12A in training set T0547 405 :AEILTHLIT 1a12A 181 :NDHLVMLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72286 # 1sg6A.405.287 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 405 :AEILTHLIT 1sg6A 288 :GECVAIGMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72287 # 1qqfA.405.65 read from T0547.t04.many.frag # found chain 1qqfA in training set T0547 405 :AEILTHLIT 1qqfA 1075 :STWLTAYVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72288 # 1gxrA.405.235 read from T0547.t04.many.frag # found chain 1gxrA in training set Warning: unaligning (T0547)A405 (1gxrA)G669 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1gxrA)E670 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLIT 1gxrA 671 :WLAVGME Number of specific fragments extracted= 1 number of extra gaps= 1 total=72289 # 1zsqA.405.431 read from T0547.t04.many.frag # found chain 1zsqA in template set T0547 405 :AEILTHLIT 1zsqA 501 :NEYFLITIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72290 # 1yovA.405.305 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 405 :AEILTHLIT 1yovA 303 :SFWILARAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72291 1ug3A expands to /projects/compbio/data/pdb/1ug3.pdb.gz 1ug3A:# 1ug3A.405.242 read from T0547.t04.many.frag # adding 1ug3A to template set # found chain 1ug3A in template set T0547 405 :AEILTHLIT 1ug3A 1476 :SNTLVRALM Number of specific fragments extracted= 1 number of extra gaps= 0 total=72292 # 2d0oA.405.524 read from T0547.t04.many.frag # found chain 2d0oA in template set T0547 405 :AEILTHLIT 2d0oA 525 :KERVFVTNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72293 # 1wurA.405.148 read from T0547.t04.many.frag # found chain 1wurA in template set T0547 405 :AEILTHLIT 1wurA 149 :QERLAVQIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72294 # 2bo4A.405.134 read from T0547.t04.many.frag # found chain 2bo4A in template set Warning: unaligning (T0547)A405 (2bo4A)D135 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2bo4A)A136 because L (left) conformation "forbidden" or filtered. T0547 407 :ILTHLIT 2bo4A 137 :MITWMIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=72295 # 2bo4A.405.133 read from T0547.t04.many.frag # found chain 2bo4A in template set Warning: unaligning (T0547)E406 (2bo4A)D135 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I407 (2bo4A)A136 because L (left) conformation "forbidden" or filtered. T0547 405 :A 2bo4A 134 :T T0547 408 :LTHLIT 2bo4A 137 :MITWMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=72297 # 1pjxA.405.81 read from T0547.t04.many.frag # found chain 1pjxA in training set T0547 405 :AEILTHLIT 1pjxA 82 :ANQLFVADM Number of specific fragments extracted= 1 number of extra gaps= 0 total=72298 # 1kufA.405.134 read from T0547.t04.many.frag # found chain 1kufA in template set T0547 405 :AEILTHLIT 1kufA 135 :VFMVAVTMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72299 # 1knwA.406.367 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I412 (1knwA)D374 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T413 (1knwA)T375 because G (3-10) conformation "forbidden" or filtered. T0547 406 :EILTHL 1knwA 368 :DYLVLH T0547 414 :K 1knwA 376 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=72301 # 7odcA.406.378 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I412 (7odcA)N385 because L (left) conformation "forbidden" or filtered. T0547 406 :EILTHL 7odcA 379 :DWMLFE T0547 413 :TK 7odcA 386 :MG Number of specific fragments extracted= 2 number of extra gaps= 1 total=72303 # 1rlr.406.478 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 406 :EILTHLITK 1rlr 479 :DELAILAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72304 # 1y93A.406.105 read from T0547.t04.many.frag # found chain 1y93A in training set T0547 406 :EILTHLITK 1y93A 210 :TNLFLTAVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=72305 # 2be1A.406.10 read from T0547.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A126 Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A126 T0547 406 :EILT 2be1A 121 :DILI T0547 412 :ITK 2be1A 127 :DVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=72307 # 1euvA.406.50 read from T0547.t04.many.frag # found chain 1euvA in training set T0547 406 :EILTHLITK 1euvA 451 :DTIIEFFMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72308 # 1wa5C.406.305 read from T0547.t04.many.frag # found chain 1wa5C in template set T0547 406 :EILTHLITK 1wa5C 306 :DILVSKSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72309 # 2b5nA.406.36 read from T0547.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)K414 (2b5nA)G431 because T (delta_L) conformation "forbidden" or filtered. T0547 406 :EILTHLIT 2b5nA 423 :DTLVLSFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=72310 # 1qazA.406.206 read from T0547.t04.many.frag # found chain 1qazA in training set T0547 406 :EILTHLITK 1qazA 210 :DELFRWGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72311 # 1a12A.406.173 read from T0547.t04.many.frag # found chain 1a12A in training set T0547 406 :EILTHLITK 1a12A 182 :DHLVMLTAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=72312 # 1tbfA.406.241 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 406 :EILTHLITK 1tbfA 753 :ELFLAMLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72313 # 1tx4A.406.26 read from T0547.t04.many.frag # found chain 1tx4A in training set T0547 406 :EILTHLITK 1tx4A 63 :PIVLRETVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72314 # 1wpoA.406.118 read from T0547.t04.many.frag # found chain 1wpoA in template set T0547 406 :EILTHLITK 1wpoA 119 :KVVEFLSGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72315 # 1otsA.406.386 read from T0547.t04.many.frag # found chain 1otsA in template set T0547 406 :EILTHLITK 1otsA 387 :GTFAIAGMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72316 # 1izoA.406.365 read from T0547.t04.many.frag # found chain 1izoA in template set T0547 406 :EILTHLITK 1izoA 366 :EGITIEVMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72317 # 1sg6A.406.288 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 406 :EILTHLITK 1sg6A 289 :ECVAIGMVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72318 # 2bmoA.406.407 read from T0547.t04.many.frag # found chain 2bmoA in training set T0547 406 :EILTHLITK 2bmoA 408 :ETSYRGFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72319 # 1yovA.406.306 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 406 :EILTHLITK 1yovA 304 :FWILARALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72320 # 2d0oA.406.525 read from T0547.t04.many.frag # found chain 2d0oA in template set T0547 406 :EILTHLITK 2d0oA 526 :ERVFVTNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72321 # 1pjr.406.352 read from T0547.t04.many.frag # found chain 1pjr in template set T0547 406 :EILTHLITK 1pjr 353 :DFAVLYRTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=72322 # 1gxrA.406.236 read from T0547.t04.many.frag # found chain 1gxrA in training set T0547 406 :EILTHLITK 1gxrA 670 :EWLAVGMES Number of specific fragments extracted= 1 number of extra gaps= 0 total=72323 # 1ug3A.406.243 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 406 :EILTHLITK 1ug3A 1477 :NTLVRALMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72324 # 1txkA.406.124 read from T0547.t04.many.frag # found chain 1txkA in template set Warning: unaligning (T0547)E406 (1txkA)D146 because P (beta_P) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1txkA 147 :EIVSMLGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=72325 # 1qqfA.406.66 read from T0547.t04.many.frag # found chain 1qqfA in training set T0547 406 :EILTHLITK 1qqfA 1076 :TWLTAYVSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72326 # 1pjxA.406.82 read from T0547.t04.many.frag # found chain 1pjxA in training set T0547 406 :EILTHLITK 1pjxA 83 :NQLFVADMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72327 # 1wurA.406.149 read from T0547.t04.many.frag # found chain 1wurA in template set T0547 406 :EILTHLITK 1wurA 150 :ERLAVQIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72328 # 1j0dA.406.316 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)I412 (1j0dA)L323 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (1j0dA)G325 because T (delta_L) conformation "forbidden" or filtered. T0547 406 :EILTHL 1j0dA 317 :NVLYVH T0547 413 :T 1j0dA 324 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=72330 # 1v6sA.406.209 read from T0547.t04.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)L411 (1v6sA)G215 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I412 (1v6sA)G216 because S (epsilon) conformation "forbidden" or filtered. T0547 406 :EILTH 1v6sA 210 :DRLLI T0547 413 :TK 1v6sA 217 :AM Number of specific fragments extracted= 2 number of extra gaps= 1 total=72332 # 2bo4A.406.134 read from T0547.t04.many.frag # found chain 2bo4A in template set Warning: unaligning (T0547)I407 (2bo4A)A136 because L (left) conformation "forbidden" or filtered. T0547 406 :E 2bo4A 135 :D T0547 408 :LTHLITK 2bo4A 137 :MITWMIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=72334 # 1kufA.406.135 read from T0547.t04.many.frag # found chain 1kufA in template set T0547 406 :EILTHLITK 1kufA 136 :FMVAVTMTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=72335 # 1knwA.407.368 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)T413 (1knwA)T375 because G (3-10) conformation "forbidden" or filtered. T0547 407 :ILTHLI 1knwA 369 :YLVLHD T0547 414 :KK 1knwA 376 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=72337 # 7odcA.407.379 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I412 (7odcA)N385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (7odcA)A388 because E (beta_S) conformation "forbidden" or filtered. T0547 407 :ILTHL 7odcA 380 :WMLFE T0547 413 :TK 7odcA 386 :MG Number of specific fragments extracted= 2 number of extra gaps= 2 total=72339 # 1rlr.407.479 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 407 :ILTHLITKK 1rlr 480 :ELAILAVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72340 # 1y93A.407.106 read from T0547.t04.many.frag # found chain 1y93A in training set T0547 407 :ILTHLITKK 1y93A 211 :NLFLTAVHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72341 # 2be1A.407.11 read from T0547.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A126 Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A126 Warning: unaligning (T0547)K415 (2be1A)G130 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILT 2be1A 122 :ILI T0547 412 :ITK 2be1A 127 :DVE Number of specific fragments extracted= 2 number of extra gaps= 2 total=72343 # 1a12A.407.174 read from T0547.t04.many.frag # found chain 1a12A in training set T0547 407 :ILTHLITKK 1a12A 183 :HLVMLTADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72344 # 1euvA.407.51 read from T0547.t04.many.frag # found chain 1euvA in training set T0547 407 :ILTHLITKK 1euvA 452 :TIIEFFMKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=72345 # 1qazA.407.207 read from T0547.t04.many.frag # found chain 1qazA in training set T0547 407 :ILTHLITKK 1qazA 211 :ELFRWGLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72346 # 1wa5C.407.306 read from T0547.t04.many.frag # found chain 1wa5C in template set T0547 407 :ILTHLITKK 1wa5C 307 :ILVSKSLSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72347 # 2bmoA.407.408 read from T0547.t04.many.frag # found chain 2bmoA in training set T0547 407 :ILTHLITKK 2bmoA 409 :TSYRGFYRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72348 # 1tbfA.407.242 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 407 :ILTHLITKK 1tbfA 754 :LFLAMLMTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72349 # 2b5nA.407.37 read from T0547.t04.many.frag # found chain 2b5nA in template set T0547 407 :ILTHLITKK 2b5nA 424 :TLVLSFVGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=72350 # 1utcA.407.271 read from T0547.t04.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)K415 (1utcA)G280 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1utcA 272 :VVFLITKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=72351 # 1otsA.407.387 read from T0547.t04.many.frag # found chain 1otsA in template set T0547 407 :ILTHLITKK 1otsA 388 :TFAIAGMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72352 # 1wpoA.407.119 read from T0547.t04.many.frag # found chain 1wpoA in template set T0547 407 :ILTHLITKK 1wpoA 120 :VVEFLSGSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=72353 # 1tx4A.407.27 read from T0547.t04.many.frag # found chain 1tx4A in training set T0547 407 :ILTHLITKK 1tx4A 64 :IVLRETVAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=72354 # 1j0dA.407.317 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)K414 (1j0dA)G325 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLIT 1j0dA 318 :VLYVHLG T0547 415 :K 1j0dA 326 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=72356 # 1sg6A.407.289 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 407 :ILTHLITKK 1sg6A 290 :CVAIGMVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72357 # 1ug3A.407.244 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 407 :ILTHLITKK 1ug3A 1478 :TLVRALMTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72358 # 1pjxA.407.83 read from T0547.t04.many.frag # found chain 1pjxA in training set T0547 407 :ILTHLITKK 1pjxA 84 :QLFVADMRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72359 # 1izoA.407.366 read from T0547.t04.many.frag # found chain 1izoA in template set T0547 407 :ILTHLITKK 1izoA 367 :GITIEVMKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72360 # 1pjr.407.353 read from T0547.t04.many.frag # found chain 1pjr in template set T0547 407 :ILTHLITKK 1pjr 354 :FAVLYRTNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72361 # 1yovA.407.307 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 407 :ILTHLITKK 1yovA 305 :WILARALKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72362 # 2d0oA.407.526 read from T0547.t04.many.frag # found chain 2d0oA in template set T0547 407 :ILTHLITKK 2d0oA 527 :RVFVTNALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72363 # 1txkA.407.125 read from T0547.t04.many.frag # found chain 1txkA in template set Warning: unaligning (T0547)L411 (1txkA)M151 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)T413 (1txkA)G153 because S (epsilon) conformation "forbidden" or filtered. T0547 407 :ILTH 1txkA 147 :EIVS T0547 412 :I 1txkA 152 :L T0547 414 :KK 1txkA 154 :AS Number of specific fragments extracted= 3 number of extra gaps= 2 total=72366 1jdhA expands to /projects/compbio/data/pdb/1jdh.pdb.gz 1jdhA:# 1jdhA.407.433 read from T0547.t04.many.frag # adding 1jdhA to template set # found chain 1jdhA in template set T0547 407 :ILTHLITKK 1jdhA 568 :EIVEGCTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72367 # 1w6sA.407.485 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)H410 (1w6sA)Y489 because Y (epsilon') conformation "forbidden" or filtered. T0547 407 :ILT 1w6sA 486 :LVF T0547 411 :LITKK 1w6sA 490 :GTLDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=72369 # 1v7wA.407.428 read from T0547.t04.many.frag # found chain 1v7wA in training set T0547 407 :ILTHLITKK 1v7wA 429 :LWLIPTICK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72370 # 1wurA.407.150 read from T0547.t04.many.frag # found chain 1wurA in template set T0547 407 :ILTHLITKK 1wurA 151 :RLAVQIAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72371 # 1gxrA.407.237 read from T0547.t04.many.frag # found chain 1gxrA in training set T0547 407 :ILTHLITKK 1gxrA 671 :WLAVGMESS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72372 # 1knwA.408.369 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I412 (1knwA)D374 because L (left) conformation "forbidden" or filtered. T0547 408 :LTHL 1knwA 370 :LVLH T0547 413 :TKKA 1knwA 375 :TGAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=72374 # 7odcA.408.380 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A416 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. T0547 408 :LTHLITKK 7odcA 381 :MLFENMGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=72375 # 1y93A.408.107 read from T0547.t04.many.frag # found chain 1y93A in training set T0547 408 :LTHLITKKA 1y93A 212 :LFLTAVHEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72376 # 1rlr.408.480 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 408 :LTHLITKKA 1rlr 481 :LAILAVRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72377 # 1a12A.408.175 read from T0547.t04.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)K415 (1a12A)G191 because T (delta_L) conformation "forbidden" or filtered. T0547 408 :LTHLITK 1a12A 184 :LVMLTAD T0547 416 :A 1a12A 192 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=72379 # 2be1A.408.12 read from T0547.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A126 Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A126 T0547 408 :LT 2be1A 123 :LI T0547 412 :ITKKA 2be1A 127 :DVEGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=72381 # 1qazA.408.208 read from T0547.t04.many.frag # found chain 1qazA in training set T0547 408 :LTHLITKKA 1qazA 212 :LFRWGLGRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=72382 # 1euvA.408.52 read from T0547.t04.many.frag # found chain 1euvA in training set T0547 408 :LTHLITKKA 1euvA 453 :IIEFFMKYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72383 # 2bmoA.408.409 read from T0547.t04.many.frag # found chain 2bmoA in training set T0547 408 :LTHLITKKA 2bmoA 410 :SYRGFYRAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=72384 # 1utcA.408.272 read from T0547.t04.many.frag # found chain 1utcA in template set T0547 408 :LTHLITKKA 1utcA 273 :VFLITKYGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=72385 # 1wa5C.408.307 read from T0547.t04.many.frag # found chain 1wa5C in template set T0547 408 :LTHLITKKA 1wa5C 308 :LVSKSLSFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72386 # 1sg6A.408.290 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 408 :LTHLITKKA 1sg6A 291 :VAIGMVKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72387 # 1ug3A.408.245 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 408 :LTHLITKKA 1ug3A 1479 :LVRALMTAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72388 # 2b5nA.408.38 read from T0547.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)K414 (2b5nA)G431 because T (delta_L) conformation "forbidden" or filtered. T0547 408 :LTHLIT 2b5nA 425 :LVLSFV T0547 415 :KA 2b5nA 432 :QT Number of specific fragments extracted= 2 number of extra gaps= 1 total=72390 # 1yovA.408.308 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 408 :LTHLITKKA 1yovA 306 :ILARALKEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72391 # 1tbfA.408.243 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 408 :LTHLITKKA 1tbfA 755 :FLAMLMTAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=72392 # 1otsA.408.388 read from T0547.t04.many.frag # found chain 1otsA in template set T0547 408 :LTHLITKKA 1otsA 389 :FAIAGMGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72393 # 1tx4A.408.28 read from T0547.t04.many.frag # found chain 1tx4A in training set T0547 408 :LTHLITKKA 1tx4A 65 :VLRETVAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72394 # 2d0oA.408.527 read from T0547.t04.many.frag # found chain 2d0oA in template set T0547 408 :LTHLITKKA 2d0oA 528 :VFVTNALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72395 # 1jdhA.408.434 read from T0547.t04.many.frag # found chain 1jdhA in template set T0547 408 :LTHLITKKA 1jdhA 569 :IVEGCTGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72396 # 1wpoA.408.120 read from T0547.t04.many.frag # found chain 1wpoA in template set T0547 408 :LTHLITKKA 1wpoA 121 :VEFLSGSYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72397 # 2biwA.408.144 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)K415 (2biwA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0547 408 :LTHLITK 2biwA 145 :LLALWEG T0547 416 :A 2biwA 153 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=72399 # 1v7wA.408.429 read from T0547.t04.many.frag # found chain 1v7wA in training set T0547 408 :LTHLITKKA 1v7wA 430 :WLIPTICKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=72400 # 1j0dA.408.318 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)I412 (1j0dA)L323 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (1j0dA)G325 because T (delta_L) conformation "forbidden" or filtered. T0547 408 :LTHL 1j0dA 319 :LYVH T0547 413 :T 1j0dA 324 :G T0547 415 :KA 1j0dA 326 :AP Number of specific fragments extracted= 3 number of extra gaps= 2 total=72403 # 1w6sA.408.486 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)K415 (1w6sA)G494 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 because of BadResidue code BAD_PEPTIDE in next template residue (1w6sA)L496 T0547 408 :LTHLITK 1w6sA 487 :VFYGTLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=72404 # 2bo4A.408.136 read from T0547.t04.many.frag # found chain 2bo4A in template set T0547 408 :LTHLITKKA 2bo4A 137 :MITWMITRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72405 1gw5A expands to /projects/compbio/data/pdb/1gw5.pdb.gz 1gw5A:Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X # 1gw5A.408.344 read from T0547.t04.many.frag # adding 1gw5A to template set # found chain 1gw5A in template set T0547 408 :LTHLITKKA 1gw5A 345 :LRYLALESM Number of specific fragments extracted= 1 number of extra gaps= 0 total=72406 # 1ug3A.408.142 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 408 :LTHLITKKA 1ug3A 1376 :LLLEILGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72407 # 1pjxA.408.84 read from T0547.t04.many.frag # found chain 1pjxA in training set T0547 408 :LTHLITKKA 1pjxA 85 :LFVADMRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72408 # 1no7A.408.50 read from T0547.t04.many.frag # found chain 1no7A in template set T0547 408 :LTHLITKKA 1no7A 501 :MQQLFLNAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=72409 # 1knwA.409.370 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I412 (1knwA)D374 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. T0547 409 :THL 1knwA 371 :VLH T0547 413 :TKK 1knwA 375 :TGA T0547 417 :I 1knwA 379 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=72412 # 1y93A.409.108 read from T0547.t04.many.frag # found chain 1y93A in training set T0547 409 :THLITKKAI 1y93A 213 :FLTAVHEIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72413 # 7odcA.409.381 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 409 :THLITKKAI 7odcA 382 :LFENMGAYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72414 # 1rlr.409.481 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 409 :THLITKKAI 1rlr 482 :AILAVRALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=72415 # 2bmoA.409.410 read from T0547.t04.many.frag # found chain 2bmoA in training set T0547 409 :THLITKKAI 2bmoA 411 :YRGFYRAYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=72416 # 1qazA.409.209 read from T0547.t04.many.frag # found chain 1qazA in training set T0547 409 :THLITKKAI 1qazA 213 :FRWGLGRYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72417 # 1euvA.409.53 read from T0547.t04.many.frag # found chain 1euvA in training set T0547 409 :THLITKKAI 1euvA 454 :IEFFMKYIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72418 # 1ug3A.409.246 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 409 :THLITKKAI 1ug3A 1480 :VRALMTAVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=72419 # 1jdhA.409.435 read from T0547.t04.many.frag # found chain 1jdhA in template set T0547 409 :THLITKKAI 1jdhA 570 :VEGCTGALH Number of specific fragments extracted= 1 number of extra gaps= 0 total=72420 # 1sg6A.409.291 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 409 :THLITKKAI 1sg6A 292 :AIGMVKEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72421 # 1yovA.409.309 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 409 :THLITKKAI 1yovA 307 :LARALKEFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72422 # 1wa5C.409.308 read from T0547.t04.many.frag # found chain 1wa5C in template set T0547 409 :THLITKKAI 1wa5C 309 :VSKSLSFLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72423 # 1tbfA.409.244 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 409 :THLITKKAI 1tbfA 756 :LAMLMTACD Number of specific fragments extracted= 1 number of extra gaps= 0 total=72424 # 1otsA.409.389 read from T0547.t04.many.frag # found chain 1otsA in template set T0547 409 :THLITKKAI 1otsA 390 :AIAGMGALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72425 # 1a12A.409.176 read from T0547.t04.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)K414 (1a12A)D190 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1a12A)G191 because T (delta_L) conformation "forbidden" or filtered. T0547 409 :THLIT 1a12A 185 :VMLTA T0547 416 :AI 1a12A 192 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=72427 # 1tx4A.409.29 read from T0547.t04.many.frag # found chain 1tx4A in training set T0547 409 :THLITKKAI 1tx4A 66 :LRETVAYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=72428 # 1gw5A.409.345 read from T0547.t04.many.frag # found chain 1gw5A in template set T0547 409 :THLITKKAI 1gw5A 346 :RYLALESMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=72429 # 2d0oA.409.528 read from T0547.t04.many.frag # found chain 2d0oA in template set T0547 409 :THLITKKAI 2d0oA 529 :FVTNALRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72430 # 1ug3A.409.143 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 409 :THLITKKAI 1ug3A 1377 :LLEILGLLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=72431 # 1no7A.409.51 read from T0547.t04.many.frag # found chain 1no7A in template set T0547 409 :THLITKKAI 1no7A 502 :QQLFLNAWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72432 # 2be1A.409.13 read from T0547.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A126 Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A126 T0547 409 :T 2be1A 124 :I T0547 412 :ITKKAI 2be1A 127 :DVEGGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=72434 # 1v7wA.409.430 read from T0547.t04.many.frag # found chain 1v7wA in training set T0547 409 :THLITKKAI 1v7wA 431 :LIPTICKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72435 # 2bo4A.409.137 read from T0547.t04.many.frag # found chain 2bo4A in template set T0547 409 :THLITKKAI 2bo4A 138 :ITWMITRTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72436 # 1kufA.409.138 read from T0547.t04.many.frag # found chain 1kufA in template set T0547 409 :THLITKKAI 1kufA 139 :AVTMTHELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72437 # 1ak0.409.85 read from T0547.t04.many.frag # found chain 1ak0 in training set T0547 409 :THLITKKAI 1ak0 86 :SISAIANYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72438 # 1d0cA.409.362 read from T0547.t04.many.frag # found chain 1d0cA in training set T0547 409 :THLITKKAI 1d0cA 401 :AVEINLAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72439 # 2btoA.409.232 read from T0547.t04.many.frag # found chain 2btoA in template set T0547 409 :THLITKKAI 2btoA 233 :ITEALAGIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72440 # 2biwA.409.145 read from T0547.t04.many.frag # found chain 2biwA in template set T0547 409 :THLITKKAI 2biwA 146 :LALWEGGQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=72441 # 1w6sA.409.487 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)K414 (1w6sA)D493 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1w6sA)G494 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 because of BadResidue code BAD_PEPTIDE in next template residue (1w6sA)L496 Warning: unaligning (T0547)I417 because of BadResidue code BAD_PEPTIDE at template residue (1w6sA)L496 T0547 409 :THLIT 1w6sA 488 :FYGTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=72442 # 1wpoA.409.121 read from T0547.t04.many.frag # found chain 1wpoA in template set T0547 409 :THLITKKAI 1wpoA 122 :EFLSGSYAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72443 # 1knwA.410.371 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I412 (1knwA)D374 because L (left) conformation "forbidden" or filtered. T0547 410 :HL 1knwA 372 :LH T0547 413 :TKKAIL 1knwA 375 :TGAYGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=72445 # 1y93A.410.109 read from T0547.t04.many.frag # found chain 1y93A in training set T0547 410 :HLITKKAIL 1y93A 214 :LTAVHEIGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=72446 # 7odcA.410.382 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I412 (7odcA)N385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. T0547 410 :HL 7odcA 383 :FE T0547 413 :TKK 7odcA 386 :MGA T0547 417 :IL 7odcA 390 :TV Number of specific fragments extracted= 3 number of extra gaps= 2 total=72449 # 1rlr.410.482 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 410 :HLITKKAIL 1rlr 483 :ILAVRALDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72450 # 2bmoA.410.411 read from T0547.t04.many.frag # found chain 2bmoA in training set T0547 410 :HLITKKAIL 2bmoA 412 :RGFYRAYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72451 # 1qazA.410.210 read from T0547.t04.many.frag # found chain 1qazA in training set T0547 410 :HLITKKAIL 1qazA 214 :RWGLGRYVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=72452 # 1ug3A.410.247 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 410 :HLITKKAIL 1ug3A 1481 :RALMTAVCY Number of specific fragments extracted= 1 number of extra gaps= 0 total=72453 # 1euvA.410.54 read from T0547.t04.many.frag # found chain 1euvA in training set T0547 410 :HLITKKAIL 1euvA 455 :EFFMKYIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72454 # 1ak0.410.86 read from T0547.t04.many.frag # found chain 1ak0 in training set T0547 410 :HLITKKAIL 1ak0 87 :ISAIANYTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=72455 # 1gw5A.410.346 read from T0547.t04.many.frag # found chain 1gw5A in template set T0547 410 :HLITKKAIL 1gw5A 347 :YLALESMCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72456 # 1yovA.410.310 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 410 :HLITKKAIL 1yovA 308 :ARALKEFVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72457 # 1jdhA.410.436 read from T0547.t04.many.frag # found chain 1jdhA in template set T0547 410 :HLITKKAIL 1jdhA 571 :EGCTGALHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72458 # 1otsA.410.390 read from T0547.t04.many.frag # found chain 1otsA in template set T0547 410 :HLITKKAIL 1otsA 391 :IAGMGALLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72459 # 1ug3A.410.144 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 410 :HLITKKAIL 1ug3A 1378 :LEILGLLCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72460 # 1wa5C.410.309 read from T0547.t04.many.frag # found chain 1wa5C in template set T0547 410 :HLITKKAIL 1wa5C 310 :SKSLSFLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72461 # 1tbfA.410.245 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 410 :HLITKKAIL 1tbfA 757 :AMLMTACDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72462 # 1sg6A.410.292 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 410 :HLITKKAIL 1sg6A 293 :IGMVKEAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72463 # 1tx4A.410.30 read from T0547.t04.many.frag # found chain 1tx4A in training set T0547 410 :HLITKKAIL 1tx4A 67 :RETVAYLQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72464 # 1kufA.410.139 read from T0547.t04.many.frag # found chain 1kufA in template set T0547 410 :HLITKKAIL 1kufA 140 :VTMTHELGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=72465 # 1no7A.410.52 read from T0547.t04.many.frag # found chain 1no7A in template set T0547 410 :HLITKKAIL 1no7A 503 :QLFLNAWGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=72466 # 2btoA.410.233 read from T0547.t04.many.frag # found chain 2btoA in template set T0547 410 :HLITKKAIL 2btoA 234 :TEALAGITA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72467 # 2d0oA.410.529 read from T0547.t04.many.frag # found chain 2d0oA in template set T0547 410 :HLITKKAIL 2d0oA 530 :VTNALRALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72468 # 1ucdA.410.81 read from T0547.t04.many.frag # found chain 1ucdA in training set T0547 410 :HLITKKAIL 1ucdA 82 :SHEWTKHGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72469 # 1w6sA.410.488 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)H410 (1w6sA)Y489 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (1w6sA)D493 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1w6sA)G494 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 because of BadResidue code BAD_PEPTIDE in next template residue (1w6sA)L496 Warning: unaligning (T0547)I417 because of BadResidue code BAD_PEPTIDE at template residue (1w6sA)L496 T0547 411 :LIT 1w6sA 490 :GTL T0547 418 :L 1w6sA 497 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=72471 # 2bo4A.410.138 read from T0547.t04.many.frag # found chain 2bo4A in template set T0547 410 :HLITKKAIL 2bo4A 139 :TWMITRTGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72472 # 1cpo.410.181 read from T0547.t04.many.frag # found chain 1cpo in template set T0547 410 :HLITKKAIL 1cpo 181 :NVESGFIFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72473 # 1v7wA.410.431 read from T0547.t04.many.frag # found chain 1v7wA in training set T0547 410 :HLITKKAIL 1v7wA 432 :IPTICKYVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=72474 # 1zsqA.410.436 read from T0547.t04.many.frag # found chain 1zsqA in template set T0547 410 :HLITKKAIL 1zsqA 506 :ITILDHLYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72475 # 1d0cA.410.363 read from T0547.t04.many.frag # found chain 1d0cA in training set T0547 410 :HLITKKAIL 1d0cA 402 :VEINLAVLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=72476 # 2bo4A.410.139 read from T0547.t04.many.frag # found chain 2bo4A in template set T0547 410 :HLITKKAIL 2bo4A 140 :WMITRTGFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72477 # 1knwA.411.372 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I412 (1knwA)D374 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. T0547 411 :L 1knwA 373 :H T0547 413 :TKK 1knwA 375 :TGA T0547 417 :ILL 1knwA 379 :GAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=72480 # 1y93A.411.110 read from T0547.t04.many.frag # found chain 1y93A in training set T0547 411 :LITKKAILL 1y93A 215 :TAVHEIGHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72481 # 7odcA.411.383 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A416 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. T0547 411 :LITKK 7odcA 384 :ENMGA T0547 417 :ILL 7odcA 390 :TVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=72483 # 1rlr.411.483 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 411 :LITKKAILL 1rlr 484 :LAVRALDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72484 # 2bmoA.411.412 read from T0547.t04.many.frag # found chain 2bmoA in training set T0547 411 :LITKKAILL 2bmoA 413 :GFYRAYQAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=72485 # 1qazA.411.211 read from T0547.t04.many.frag # found chain 1qazA in training set T0547 411 :LITKKAILL 1qazA 215 :WGLGRYVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72486 # 1ak0.411.87 read from T0547.t04.many.frag # found chain 1ak0 in training set T0547 411 :LITKKAILL 1ak0 88 :SAIANYTQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72487 # 1gw5A.411.347 read from T0547.t04.many.frag # found chain 1gw5A in template set T0547 411 :LITKKAILL 1gw5A 348 :LALESMCTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72488 # 1ug3A.411.248 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 411 :LITKKAILL 1ug3A 1482 :ALMTAVCYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72489 # 1euvA.411.55 read from T0547.t04.many.frag # found chain 1euvA in training set T0547 411 :LITKKAILL 1euvA 456 :FFMKYIEKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72490 # 1otsA.411.391 read from T0547.t04.many.frag # found chain 1otsA in template set T0547 411 :LITKKAILL 1otsA 392 :AGMGALLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72491 # 1ug3A.411.145 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 411 :LITKKAILL 1ug3A 1379 :EILGLLCKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72492 # 1jdhA.411.437 read from T0547.t04.many.frag # found chain 1jdhA in template set T0547 411 :LITKKAILL 1jdhA 572 :GCTGALHIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72493 # 2btoA.411.234 read from T0547.t04.many.frag # found chain 2btoA in template set T0547 411 :LITKKAILL 2btoA 235 :EALAGITAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72494 # 1yovA.411.311 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 411 :LITKKAILL 1yovA 309 :RALKEFVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72495 # 1w6sA.411.489 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)K415 (1w6sA)G494 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 because of BadResidue code BAD_PEPTIDE in next template residue (1w6sA)L496 Warning: unaligning (T0547)I417 because of BadResidue code BAD_PEPTIDE at template residue (1w6sA)L496 T0547 411 :LITK 1w6sA 490 :GTLD T0547 418 :LL 1w6sA 497 :KA Number of specific fragments extracted= 2 number of extra gaps= 1 total=72497 # 1kufA.411.140 read from T0547.t04.many.frag # found chain 1kufA in template set T0547 411 :LITKKAILL 1kufA 141 :TMTHELGHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=72498 # 1no7A.411.53 read from T0547.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)A416 (1no7A)W509 because G (3-10) conformation "forbidden" or filtered. T0547 411 :LITKK 1no7A 504 :LFLNA T0547 417 :ILL 1no7A 510 :GQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=72500 # 1tx4A.411.31 read from T0547.t04.many.frag # found chain 1tx4A in training set T0547 411 :LITKKAILL 1tx4A 68 :ETVAYLQAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=72501 # 1cpo.411.182 read from T0547.t04.many.frag # found chain 1cpo in template set T0547 411 :LITKKAILL 1cpo 182 :VESGFIFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72502 # 1wa5C.411.310 read from T0547.t04.many.frag # found chain 1wa5C in template set T0547 411 :LITKKAILL 1wa5C 311 :KSLSFLTAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72503 # 1sg6A.411.293 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 411 :LITKKAILL 1sg6A 294 :GMVKEAELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72504 # 1ucdA.411.82 read from T0547.t04.many.frag # found chain 1ucdA in training set T0547 411 :LITKKAILL 1ucdA 83 :HEWTKHGTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=72505 # 2d0oA.411.530 read from T0547.t04.many.frag # found chain 2d0oA in template set T0547 411 :LITKKAILL 2d0oA 531 :TNALRALRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=72506 # 1tbfA.411.246 read from T0547.t04.many.frag # found chain 1tbfA in training set T0547 411 :LITKKAILL 1tbfA 758 :MLMTACDLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72507 # 1zsqA.411.437 read from T0547.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0547)L419 (1zsqA)C515 because L (left) conformation "forbidden" or filtered. T0547 411 :LITKKAIL 1zsqA 507 :TILDHLYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=72508 # 1v7wA.411.432 read from T0547.t04.many.frag # found chain 1v7wA in training set T0547 411 :LITKKAILL 1v7wA 433 :PTICKYVME Number of specific fragments extracted= 1 number of extra gaps= 0 total=72509 # 1xm9A.411.302 read from T0547.t04.many.frag # found chain 1xm9A in template set T0547 411 :LITKKAILL 1xm9A 546 :ACAGALQNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72510 # 1wurA.411.154 read from T0547.t04.many.frag # found chain 1wurA in template set T0547 411 :LITKKAILL 1wurA 155 :QIAEAIQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72511 # 1d0cA.411.364 read from T0547.t04.many.frag # found chain 1d0cA in training set T0547 411 :LITKKAILL 1d0cA 403 :EINLAVLHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72512 # 1knwA.412.373 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I412 (1knwA)D374 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. T0547 413 :TKK 1knwA 375 :TGA T0547 417 :ILLL 1knwA 379 :GASM Number of specific fragments extracted= 2 number of extra gaps= 2 total=72514 # 1y93A.412.111 read from T0547.t04.many.frag # found chain 1y93A in training set T0547 412 :ITKKAILLL 1y93A 216 :AVHEIGHSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72515 # 7odcA.412.384 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I412 (7odcA)N385 because L (left) conformation "forbidden" or filtered. T0547 413 :TKKAILLL 7odcA 386 :MGAYTVAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=72516 # 2bmoA.412.413 read from T0547.t04.many.frag # found chain 2bmoA in training set T0547 412 :ITKKAILLL 2bmoA 414 :FYRAYQAHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72517 # 1rlr.412.484 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 412 :ITKKAILLL 1rlr 485 :AVRALDALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72518 # 1ak0.412.88 read from T0547.t04.many.frag # found chain 1ak0 in training set T0547 412 :ITKKAILLL 1ak0 89 :AIANYTQRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72519 # 1qazA.412.212 read from T0547.t04.many.frag # found chain 1qazA in training set T0547 412 :ITKKAILLL 1qazA 216 :GLGRYVQAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=72520 # 1gw5A.412.348 read from T0547.t04.many.frag # found chain 1gw5A in template set T0547 412 :ITKKAILLL 1gw5A 349 :ALESMCTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72521 # 1ug3A.412.249 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 412 :ITKKAILLL 1ug3A 1483 :LMTAVCYSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72522 # 2btoA.412.235 read from T0547.t04.many.frag # found chain 2btoA in template set T0547 412 :ITKKAILLL 2btoA 236 :ALAGITASM Number of specific fragments extracted= 1 number of extra gaps= 0 total=72523 # 1euvA.412.56 read from T0547.t04.many.frag # found chain 1euvA in training set T0547 412 :ITKKAILLL 1euvA 457 :FMKYIEKST Number of specific fragments extracted= 1 number of extra gaps= 0 total=72524 # 1otsA.412.392 read from T0547.t04.many.frag # found chain 1otsA in template set T0547 412 :ITKKAILLL 1otsA 393 :GMGALLAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72525 # 1kufA.412.141 read from T0547.t04.many.frag # found chain 1kufA in template set T0547 412 :ITKKAILLL 1kufA 142 :MTHELGHNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72526 # 1ucdA.412.83 read from T0547.t04.many.frag # found chain 1ucdA in training set T0547 412 :ITKKAILLL 1ucdA 84 :EWTKHGTCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72527 # 1w6sA.412.490 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)K415 (1w6sA)G494 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 because of BadResidue code BAD_PEPTIDE in next template residue (1w6sA)L496 Warning: unaligning (T0547)I417 because of BadResidue code BAD_PEPTIDE at template residue (1w6sA)L496 T0547 412 :ITK 1w6sA 491 :TLD T0547 418 :LLL 1w6sA 497 :KAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=72529 # 1cpo.412.183 read from T0547.t04.many.frag # found chain 1cpo in template set T0547 412 :ITKKAILLL 1cpo 183 :ESGFIFALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72530 # 1jdhA.412.438 read from T0547.t04.many.frag # found chain 1jdhA in template set T0547 412 :ITKKAILLL 1jdhA 573 :CTGALHILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72531 # 1xm9A.412.303 read from T0547.t04.many.frag # found chain 1xm9A in template set T0547 412 :ITKKAILLL 1xm9A 547 :CAGALQNLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72532 # 1yovA.412.312 read from T0547.t04.many.frag # found chain 1yovA in template set T0547 412 :ITKKAILLL 1yovA 310 :ALKEFVAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72533 # 1wpoA.412.124 read from T0547.t04.many.frag # found chain 1wpoA in template set T0547 412 :ITKKAILLL 1wpoA 125 :SGSYAGLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72534 # 1no7A.412.54 read from T0547.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)K415 (1no7A)A508 because G (3-10) conformation "forbidden" or filtered. T0547 412 :ITK 1no7A 505 :FLN T0547 416 :AILLL 1no7A 509 :WGQRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=72536 # 1tx4A.412.32 read from T0547.t04.many.frag # found chain 1tx4A in training set T0547 412 :ITKKAILLL 1tx4A 69 :TVAYLQAHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72537 # 1ug3A.412.146 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 412 :ITKKAILLL 1ug3A 1380 :ILGLLCKSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=72538 # 1zsqA.412.438 read from T0547.t04.many.frag # found chain 1zsqA in template set T0547 412 :ITKKAILLL 1zsqA 508 :ILDHLYSCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72539 # 2d0oA.412.531 read from T0547.t04.many.frag # found chain 2d0oA in template set T0547 412 :ITKKAILLL 2d0oA 532 :NALRALRQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72540 # 1v7wA.412.433 read from T0547.t04.many.frag # found chain 1v7wA in training set T0547 412 :ITKKAILLL 1v7wA 434 :TICKYVMET Number of specific fragments extracted= 1 number of extra gaps= 0 total=72541 # 1sg6A.412.294 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 412 :ITKKAILLL 1sg6A 295 :MVKEAELAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72542 # 1iirA.412.318 read from T0547.t04.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)K414 (1iirA)G321 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1iirA)A322 because P (beta_P) conformation "forbidden" or filtered. T0547 412 :IT 1iirA 319 :RA T0547 416 :AILLL 1iirA 323 :PQILL Number of specific fragments extracted= 2 number of extra gaps= 1 total=72544 # 1zx0A.412.169 read from T0547.t04.many.frag # found chain 1zx0A in template set T0547 412 :ITKKAILLL 1zx0A 170 :NLTSWGELM Number of specific fragments extracted= 1 number of extra gaps= 0 total=72545 # 1wa5C.412.311 read from T0547.t04.many.frag # found chain 1wa5C in template set T0547 412 :ITKKAILLL 1wa5C 312 :SLSFLTAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72546 # 1knwA.413.374 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A416 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. T0547 413 :TKK 1knwA 375 :TGA T0547 417 :ILLLG 1knwA 379 :GASMS Number of specific fragments extracted= 2 number of extra gaps= 1 total=72548 # 1y93A.413.112 read from T0547.t04.many.frag # found chain 1y93A in training set T0547 413 :TKKAILLLG 1y93A 217 :VHEIGHSLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72549 # 7odcA.413.385 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A416 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. T0547 413 :TKK 7odcA 386 :MGA T0547 417 :ILLLG 7odcA 390 :TVAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=72551 # 2bmoA.413.414 read from T0547.t04.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)G421 (2bmoA)S423 because G (3-10) conformation "forbidden" or filtered. T0547 413 :TKKAILLL 2bmoA 415 :YRAYQAHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=72552 # 1ak0.413.89 read from T0547.t04.many.frag # found chain 1ak0 in training set T0547 413 :TKKAILLLG 1ak0 90 :IANYTQRVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72553 # 1gw5A.413.349 read from T0547.t04.many.frag # found chain 1gw5A in template set T0547 413 :TKKAILLLG 1gw5A 350 :LESMCTLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72554 # 1rlr.413.485 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 413 :TKKAILLLG 1rlr 486 :VRALDALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=72555 # 1qazA.413.213 read from T0547.t04.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)G421 (1qazA)G225 because G (3-10) conformation "forbidden" or filtered. T0547 413 :TKKAILLL 1qazA 217 :LGRYVQAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=72556 # 1ug3A.413.250 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 413 :TKKAILLLG 1ug3A 1484 :MTAVCYSAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72557 # 1kufA.413.142 read from T0547.t04.many.frag # found chain 1kufA in template set T0547 413 :TKKAILLLG 1kufA 143 :THELGHNLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72558 # 2btoA.413.236 read from T0547.t04.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)G421 (2btoA)R245 because G (3-10) conformation "forbidden" or filtered. T0547 413 :TKKAILLL 2btoA 237 :LAGITASM Number of specific fragments extracted= 1 number of extra gaps= 1 total=72559 # 1xm9A.413.304 read from T0547.t04.many.frag # found chain 1xm9A in template set T0547 413 :TKKAILLLG 1xm9A 548 :AGALQNLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72560 # 1ucdA.413.84 read from T0547.t04.many.frag # found chain 1ucdA in training set T0547 413 :TKKAILLLG 1ucdA 85 :WTKHGTCSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72561 # 1zsqA.413.439 read from T0547.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0547)L419 (1zsqA)C515 because L (left) conformation "forbidden" or filtered. T0547 413 :TKKAIL 1zsqA 509 :LDHLYS T0547 420 :LG 1zsqA 516 :LF Number of specific fragments extracted= 2 number of extra gaps= 1 total=72563 # 1euvA.413.57 read from T0547.t04.many.frag # found chain 1euvA in training set T0547 413 :TKKAILLLG 1euvA 458 :MKYIEKSTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=72564 # 1tx4A.413.33 read from T0547.t04.many.frag # found chain 1tx4A in training set T0547 413 :TKKAILLLG 1tx4A 70 :VAYLQAHAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72565 # 1cpo.413.184 read from T0547.t04.many.frag # found chain 1cpo in template set T0547 413 :TKKAILLLG 1cpo 184 :SGFIFALVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72566 # 1vns.413.307 read from T0547.t04.many.frag # found chain 1vns in training set T0547 413 :TKKAILLLG 1vns 308 :VRRIAVTYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72567 # 1wurA.413.156 read from T0547.t04.many.frag # found chain 1wurA in template set T0547 413 :TKKAILLLG 1wurA 157 :AEAIQEVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72568 # 1zx0A.413.170 read from T0547.t04.many.frag # found chain 1zx0A in template set T0547 413 :TKKAILLLG 1zx0A 171 :LTSWGELMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72569 # 1w6sA.413.491 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)A416 because of BadResidue code BAD_PEPTIDE in next template residue (1w6sA)L496 Warning: unaligning (T0547)I417 because of BadResidue code BAD_PEPTIDE at template residue (1w6sA)L496 Warning: unaligning (T0547)G421 (1w6sA)D500 because P (beta_P) conformation "forbidden" or filtered. T0547 413 :TKK 1w6sA 492 :LDG T0547 418 :LLL 1w6sA 497 :KAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=72571 # 2bw3A.413.313 read from T0547.t04.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)G421 (2bw3A)S397 because P (beta_P) conformation "forbidden" or filtered. T0547 413 :TKKAILLL 2bw3A 389 :ILKVKEIC Number of specific fragments extracted= 1 number of extra gaps= 1 total=72572 # 1v7wA.413.434 read from T0547.t04.many.frag # found chain 1v7wA in training set T0547 413 :TKKAILLLG 1v7wA 435 :ICKYVMETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72573 # 1u7gA.413.266 read from T0547.t04.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)C276 T0547 413 :TKKAILLL 1u7gA 267 :AGLVGVTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=72574 # 1oruA.413.76 read from T0547.t04.many.frag # found chain 1oruA in training set T0547 413 :TKKAILLLG 1oruA 74 :CNEIALKMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72575 # 1jdhA.413.439 read from T0547.t04.many.frag # found chain 1jdhA in template set T0547 413 :TKKAILLLG 1jdhA 574 :TGALHILAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72576 # 2d0oA.413.532 read from T0547.t04.many.frag # found chain 2d0oA in template set T0547 413 :TKKAILLLG 2d0oA 533 :ALRALRQVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72577 # 1sg6A.413.295 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 413 :TKKAILLLG 1sg6A 296 :VKEAELARH Number of specific fragments extracted= 1 number of extra gaps= 0 total=72578 # 1ug3A.413.147 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 413 :TKKAILLLG 1ug3A 1381 :LGLLCKSMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72579 # 1no7A.413.55 read from T0547.t04.many.frag # found chain 1no7A in template set T0547 413 :TKKAILLLG 1no7A 506 :LNAWGQRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72580 # 1knwA.414.375 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G421 (1knwA)S383 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1knwA 376 :GAYGASM T0547 422 :D 1knwA 384 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=72582 # 1y93A.414.113 read from T0547.t04.many.frag # found chain 1y93A in training set T0547 414 :KKAILLLGD 1y93A 218 :HEIGHSLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72583 # 7odcA.414.386 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K415 (7odcA)A388 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (7odcA)A394 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :K 7odcA 387 :G T0547 416 :AILLL 7odcA 389 :YTVAA T0547 422 :D 7odcA 395 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=72586 # 1gw5A.414.350 read from T0547.t04.many.frag # found chain 1gw5A in template set Warning: unaligning (T0547)G421 (1gw5A)S358 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1gw5A)S359 because E (beta_S) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1gw5A 351 :ESMCTLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=72587 # 2bmoA.414.415 read from T0547.t04.many.frag # found chain 2bmoA in training set T0547 414 :KKAILLLGD 2bmoA 416 :RAYQAHISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72588 # 1ak0.414.90 read from T0547.t04.many.frag # found chain 1ak0 in training set T0547 414 :KKAILLLGD 1ak0 91 :ANYTQRVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=72589 # 1ug3A.414.251 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 414 :KKAILLLGD 1ug3A 1485 :TAVCYSAII Number of specific fragments extracted= 1 number of extra gaps= 0 total=72590 # 1kufA.414.143 read from T0547.t04.many.frag # found chain 1kufA in template set Warning: unaligning (T0547)D422 (1kufA)M152 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KKAILLLG 1kufA 144 :HELGHNLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=72591 # 1xm9A.414.305 read from T0547.t04.many.frag # found chain 1xm9A in template set T0547 414 :KKAILLLGD 1xm9A 549 :GALQNLTAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72592 # 1rlr.414.486 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 414 :KKAILLLGD 1rlr 487 :RALDALLDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=72593 # 1u7gA.414.267 read from T0547.t04.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)C276 Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)C276 T0547 414 :KKAILLL 1u7gA 268 :GLVGVTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=72594 # 1cpo.414.185 read from T0547.t04.many.frag # found chain 1cpo in template set Warning: unaligning (T0547)G421 (1cpo)S192 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1cpo 185 :GFIFALV T0547 422 :D 1cpo 193 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=72596 # 2btoA.414.237 read from T0547.t04.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)G421 (2btoA)R245 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2btoA)E253 T0547 414 :KKAILLL 2btoA 238 :AGITASM Number of specific fragments extracted= 1 number of extra gaps= 1 total=72597 # 1qazA.414.214 read from T0547.t04.many.frag # found chain 1qazA in training set T0547 414 :KKAILLLGD 1qazA 218 :GRYVQAMGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72598 # 2bw3A.414.314 read from T0547.t04.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)G421 (2bw3A)S397 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (2bw3A)P398 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KKAILLL 2bw3A 390 :LKVKEIC Number of specific fragments extracted= 1 number of extra gaps= 1 total=72599 # 1vns.414.308 read from T0547.t04.many.frag # found chain 1vns in training set T0547 414 :KKAILLLGD 1vns 309 :RRIAVTYKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72600 # 1oruA.414.77 read from T0547.t04.many.frag # found chain 1oruA in training set T0547 414 :KKAILLLGD 1oruA 75 :NEIALKMGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72601 # 1zx0A.414.171 read from T0547.t04.many.frag # found chain 1zx0A in template set T0547 414 :KKAILLLGD 1zx0A 172 :TSWGELMKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72602 # 1zsqA.414.440 read from T0547.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0547)L419 (1zsqA)C515 because L (left) conformation "forbidden" or filtered. T0547 414 :KKAIL 1zsqA 510 :DHLYS T0547 420 :LGD 1zsqA 516 :LFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=72604 # 1wuaA.414.313 read from T0547.t04.many.frag # found chain 1wuaA in template set T0547 414 :KKAILLLGD 1wuaA 314 :QKEITALAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=72605 # 1ucdA.414.85 read from T0547.t04.many.frag # found chain 1ucdA in training set T0547 414 :KKAILLLGD 1ucdA 86 :TKHGTCSES Number of specific fragments extracted= 1 number of extra gaps= 0 total=72606 1uw4B expands to /projects/compbio/data/pdb/1uw4.pdb.gz 1uw4B:# 1uw4B.414.183 read from T0547.t04.many.frag # adding 1uw4B to template set # found chain 1uw4B in template set Warning: unaligning (T0547)G421 (1uw4B)S958 because G (3-10) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1uw4B 951 :RYVWWKK T0547 422 :D 1uw4B 959 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=72608 # 1tx4A.414.34 read from T0547.t04.many.frag # found chain 1tx4A in training set T0547 414 :KKAILLLGD 1tx4A 71 :AYLQAHALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72609 # 1v7wA.414.435 read from T0547.t04.many.frag # found chain 1v7wA in training set Warning: unaligning (T0547)D422 (1v7wA)E444 because N (gamma') conformation "forbidden" or filtered. T0547 414 :KKAILLLG 1v7wA 436 :CKYVMETG Number of specific fragments extracted= 1 number of extra gaps= 1 total=72610 # 1sg6A.414.296 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 414 :KKAILLLGD 1sg6A 297 :KEAELARHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72611 # 1wurA.414.157 read from T0547.t04.many.frag # found chain 1wurA in template set T0547 414 :KKAILLLGD 1wurA 158 :EAIQEVLEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=72612 # 2bpa1.414.128 read from T0547.t04.many.frag # found chain 2bpa1 in template set Warning: unaligning (T0547)G421 (2bpa1)K136 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KKAILLL 2bpa1 129 :NIYNNYF T0547 422 :D 2bpa1 137 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=72614 # 1w6sA.414.492 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)A416 because of BadResidue code BAD_PEPTIDE in next template residue (1w6sA)L496 Warning: unaligning (T0547)I417 because of BadResidue code BAD_PEPTIDE at template residue (1w6sA)L496 Warning: unaligning (T0547)G421 (1w6sA)D500 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KK 1w6sA 493 :DG T0547 418 :LLL 1w6sA 497 :KAR T0547 422 :D 1w6sA 501 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=72617 # 1nnhA.414.141 read from T0547.t04.many.frag # found chain 1nnhA in training set Warning: unaligning (T0547)D422 (1nnhA)R150 because E (beta_S) conformation "forbidden" or filtered. T0547 414 :KKAILLLG 1nnhA 142 :RKAEEWTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=72618 1pc6A expands to /projects/compbio/data/pdb/1pc6.pdb.gz 1pc6A:# 1pc6A.414.53 read from T0547.t04.many.frag # adding 1pc6A to template set # found chain 1pc6A in template set Warning: unaligning (T0547)G421 (1pc6A)E61 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1pc6A 54 :GDVSRQV T0547 422 :D 1pc6A 62 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=72620 # 1knwA.415.376 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A416 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1knwA)S383 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1knwA)N385 because G (3-10) conformation "forbidden" or filtered. T0547 415 :K 1knwA 377 :A T0547 417 :ILLL 1knwA 379 :GASM T0547 422 :D 1knwA 384 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=72623 # 1y93A.415.114 read from T0547.t04.many.frag # found chain 1y93A in training set T0547 415 :KAILLLGDK 1y93A 219 :EIGHSLGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72624 # 1gw5A.415.351 read from T0547.t04.many.frag # found chain 1gw5A in template set Warning: unaligning (T0547)G421 (1gw5A)S358 because G (3-10) conformation "forbidden" or filtered. T0547 415 :KAILLL 1gw5A 352 :SMCTLA T0547 422 :DK 1gw5A 359 :SE Number of specific fragments extracted= 2 number of extra gaps= 1 total=72626 # 1ak0.415.91 read from T0547.t04.many.frag # found chain 1ak0 in training set Warning: unaligning (T0547)G421 (1ak0)S98 because G (3-10) conformation "forbidden" or filtered. T0547 415 :KAILLL 1ak0 92 :NYTQRV T0547 422 :DK 1ak0 99 :DS Number of specific fragments extracted= 2 number of extra gaps= 1 total=72628 # 7odcA.415.387 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K415 (7odcA)A388 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (7odcA)A394 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLL 7odcA 390 :TVAA T0547 422 :DK 7odcA 395 :ST Number of specific fragments extracted= 2 number of extra gaps= 2 total=72630 # 2bmoA.415.416 read from T0547.t04.many.frag # found chain 2bmoA in training set T0547 415 :KAILLLGDK 2bmoA 417 :AYQAHISSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72631 # 1xm9A.415.306 read from T0547.t04.many.frag # found chain 1xm9A in template set T0547 415 :KAILLLGDK 1xm9A 550 :ALQNLTASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72632 # 2bw3A.415.315 read from T0547.t04.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)G421 (2bw3A)S397 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLL 2bw3A 391 :KVKEIC T0547 422 :DK 2bw3A 398 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=72634 # 1kufA.415.144 read from T0547.t04.many.frag # found chain 1kufA in template set Warning: unaligning (T0547)D422 (1kufA)M152 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLLG 1kufA 145 :ELGHNLG T0547 423 :K 1kufA 153 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=72636 # 1u7gA.415.268 read from T0547.t04.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)C276 Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)C276 T0547 415 :KAILLL 1u7gA 269 :LVGVTP T0547 423 :K 1u7gA 277 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=72638 # 1wuaA.415.314 read from T0547.t04.many.frag # found chain 1wuaA in template set Warning: unaligning (T0547)G421 (1wuaA)A321 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLL 1wuaA 315 :KEITAL T0547 422 :DK 1wuaA 322 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=72640 # 1ug3A.415.252 read from T0547.t04.many.frag # found chain 1ug3A in template set Warning: unaligning (T0547)G421 (1ug3A)I1492 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1ug3A)F1494 because N (gamma') conformation "forbidden" or filtered. T0547 415 :KAILLL 1ug3A 1486 :AVCYSA T0547 422 :D 1ug3A 1493 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=72642 # 1cpo.415.186 read from T0547.t04.many.frag # found chain 1cpo in template set T0547 415 :KAILLLGDK 1cpo 186 :FIFALVSDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72643 # 1vns.415.309 read from T0547.t04.many.frag # found chain 1vns in training set T0547 415 :KAILLLGDK 1vns 310 :RIAVTYKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72644 # 1zx0A.415.172 read from T0547.t04.many.frag # found chain 1zx0A in template set T0547 415 :KAILLLGDK 1zx0A 173 :SWGELMKSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72645 # 2btoA.415.238 read from T0547.t04.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)D422 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2btoA)E253 T0547 415 :KAILLLG 2btoA 239 :GITASMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72646 # 1uw4B.415.184 read from T0547.t04.many.frag # found chain 1uw4B in template set Warning: unaligning (T0547)G421 (1uw4B)S958 because G (3-10) conformation "forbidden" or filtered. T0547 415 :KAILLL 1uw4B 952 :YVWWKK T0547 422 :DK 1uw4B 959 :LE Number of specific fragments extracted= 2 number of extra gaps= 1 total=72648 # 1oruA.415.78 read from T0547.t04.many.frag # found chain 1oruA in training set T0547 415 :KAILLLGDK 1oruA 76 :EIALKMGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=72649 # 1k3yA.415.163 read from T0547.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0547)G421 (1k3yA)D171 because E (beta_S) conformation "forbidden" or filtered. T0547 415 :KAILLL 1k3yA 165 :YYVEEL T0547 422 :DK 1k3yA 172 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=72651 # 1ois.415.46 read from T0547.t04.many.frag # found chain 1ois in template set Warning: unaligning (T0547)G421 (1ois)E193 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1ois)S194 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLL 1ois 187 :FFAALL T0547 423 :K 1ois 195 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=72653 # 2d0oA.415.534 read from T0547.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0547)G421 (2d0oA)S541 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLL 2d0oA 535 :RALRQV T0547 422 :DK 2d0oA 542 :PT Number of specific fragments extracted= 2 number of extra gaps= 1 total=72655 # 1rlr.415.487 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 415 :KAILLLGDK 1rlr 488 :ALDALLDYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=72656 # 1sg6A.415.297 read from T0547.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)K423 (1sg6A)G306 because L (left) conformation "forbidden" or filtered. T0547 415 :KAILLLGD 1sg6A 298 :EAELARHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=72657 # 1nnhA.415.142 read from T0547.t04.many.frag # found chain 1nnhA in training set Warning: unaligning (T0547)D422 (1nnhA)R150 because E (beta_S) conformation "forbidden" or filtered. T0547 415 :KAILLLG 1nnhA 143 :KAEEWTG T0547 423 :K 1nnhA 151 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=72659 # 1ucdA.415.86 read from T0547.t04.many.frag # found chain 1ucdA in training set T0547 415 :KAILLLGDK 1ucdA 87 :KHGTCSEST Number of specific fragments extracted= 1 number of extra gaps= 0 total=72660 # 1pc6A.415.54 read from T0547.t04.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)K423 (1pc6A)H63 because L (left) conformation "forbidden" or filtered. T0547 415 :KAILLLGD 1pc6A 55 :DVSRQVEW Number of specific fragments extracted= 1 number of extra gaps= 1 total=72661 # 1w9cA.415.122 read from T0547.t04.many.frag # found chain 1w9cA in template set T0547 415 :KAILLLGDK 1w9cA 829 :CTLNMINKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=72662 # 1wd3A.415.288 read from T0547.t04.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)L418 (1wd3A)G309 because Y (epsilon') conformation "forbidden" or filtered. T0547 415 :KAI 1wd3A 306 :FYE T0547 419 :LLGDK 1wd3A 310 :VMTSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=72664 # 1zsqA.415.441 read from T0547.t04.many.frag # found chain 1zsqA in template set T0547 415 :KAILLLGDK 1zsqA 511 :HLYSCLFGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72665 # 1sjwA.415.53 read from T0547.t04.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)L420 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)S60 Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE at template residue (1sjwA)S60 T0547 415 :KAILL 1sjwA 54 :WVRAT T0547 422 :DK 1sjwA 61 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=72667 # 1knwA.416.377 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A416 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. T0547 417 :ILLLGDKQ 1knwA 379 :GASMSSNY Number of specific fragments extracted= 1 number of extra gaps= 1 total=72668 # 1y93A.416.115 read from T0547.t04.many.frag # found chain 1y93A in training set T0547 416 :AILLLGDKQ 1y93A 220 :IGHSLGLGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=72669 # 1gw5A.416.352 read from T0547.t04.many.frag # found chain 1gw5A in template set Warning: unaligning (T0547)D422 (1gw5A)S359 because E (beta_S) conformation "forbidden" or filtered. T0547 416 :AILLLG 1gw5A 353 :MCTLAS T0547 423 :KQ 1gw5A 360 :EF Number of specific fragments extracted= 2 number of extra gaps= 1 total=72671 # 1ak0.416.92 read from T0547.t04.many.frag # found chain 1ak0 in training set T0547 416 :AILLLGDKQ 1ak0 93 :YTQRVSDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72672 # 7odcA.416.388 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D422 (7odcA)S395 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (7odcA)T396 because G (3-10) conformation "forbidden" or filtered. T0547 416 :AILLLG 7odcA 389 :YTVAAA T0547 424 :Q 7odcA 397 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=72674 # 1xm9A.416.307 read from T0547.t04.many.frag # found chain 1xm9A in template set T0547 416 :AILLLGDKQ 1xm9A 551 :LQNLTASKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72675 # 1wuaA.416.315 read from T0547.t04.many.frag # found chain 1wuaA in template set T0547 416 :AILLLGDKQ 1wuaA 316 :EITALAPST Number of specific fragments extracted= 1 number of extra gaps= 0 total=72676 # 1wd3A.416.289 read from T0547.t04.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)L418 (1wd3A)G309 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1wd3A)G314 because S (epsilon) conformation "forbidden" or filtered. T0547 416 :AI 1wd3A 307 :YE T0547 419 :LLGD 1wd3A 310 :VMTS T0547 424 :Q 1wd3A 315 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=72679 # 2bmoA.416.417 read from T0547.t04.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)G421 (2bmoA)S423 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (2bmoA)N426 because Y (epsilon') conformation "forbidden" or filtered. T0547 416 :AILLL 2bmoA 418 :YQAHI T0547 422 :DK 2bmoA 424 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=72681 # 1vns.416.310 read from T0547.t04.many.frag # found chain 1vns in training set T0547 416 :AILLLGDKQ 1vns 311 :IAVTYKKEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72682 # 1u7gA.416.269 read from T0547.t04.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)C276 Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)C276 T0547 416 :AILLL 1u7gA 270 :VGVTP T0547 423 :KQ 1u7gA 277 :GY Number of specific fragments extracted= 2 number of extra gaps= 1 total=72684 # 2bw3A.416.316 read from T0547.t04.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)G421 (2bw3A)S397 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (2bw3A)D399 because E (beta_S) conformation "forbidden" or filtered. T0547 416 :AILLL 2bw3A 392 :VKEIC T0547 422 :D 2bw3A 398 :P T0547 424 :Q 2bw3A 400 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=72687 # 1uw4B.416.185 read from T0547.t04.many.frag # found chain 1uw4B in template set Warning: unaligning (T0547)G421 (1uw4B)S958 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1uw4B)L959 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AILLL 1uw4B 953 :VWWKK T0547 423 :KQ 1uw4B 960 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=72689 # 1kufA.416.145 read from T0547.t04.many.frag # found chain 1kufA in template set Warning: unaligning (T0547)K423 (1kufA)E153 because E (beta_S) conformation "forbidden" or filtered. T0547 416 :AILLLGD 1kufA 146 :LGHNLGM T0547 424 :Q 1kufA 154 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=72691 # 2aqjA.416.283 read from T0547.t04.many.frag # found chain 2aqjA in training set T0547 416 :AILLLGDKQ 2aqjA 284 :SGYVFSSHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72692 # 2d0oA.416.535 read from T0547.t04.many.frag # found chain 2d0oA in template set T0547 416 :AILLLGDKQ 2d0oA 536 :ALRQVSPTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=72693 # 1zx0A.416.173 read from T0547.t04.many.frag # found chain 1zx0A in template set T0547 416 :AILLLGDKQ 1zx0A 174 :WGELMKSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=72694 # 1cpo.416.187 read from T0547.t04.many.frag # found chain 1cpo in template set Warning: unaligning (T0547)G421 (1cpo)S192 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AILLL 1cpo 187 :IFALV T0547 422 :DKQ 1cpo 193 :DFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=72696 # 1k3yA.416.164 read from T0547.t04.many.frag # found chain 1k3yA in training set T0547 416 :AILLLGDKQ 1k3yA 166 :YVEELDSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72697 # 1oruA.416.79 read from T0547.t04.many.frag # found chain 1oruA in training set T0547 416 :AILLLGDKQ 1oruA 77 :IALKMGVPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=72698 # 1pc6A.416.55 read from T0547.t04.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)K423 (1pc6A)H63 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1pc6A)G64 because T (delta_L) conformation "forbidden" or filtered. T0547 416 :AILLLGD 1pc6A 56 :VSRQVEW Number of specific fragments extracted= 1 number of extra gaps= 1 total=72699 # 2btoA.416.239 read from T0547.t04.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)G421 (2btoA)R245 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2btoA)E253 T0547 416 :AILLL 2btoA 240 :ITASM Number of specific fragments extracted= 1 number of extra gaps= 1 total=72700 # 1sg6A.416.298 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 416 :AILLLGDKQ 1sg6A 299 :AELARHLGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72701 # 1r0pA.416.143 read from T0547.t04.many.frag # found chain 1r0pA in training set T0547 416 :AILLLGDKQ 1r0pA 1192 :MKFLASKKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=72702 # 1tf5A.416.640 read from T0547.t04.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)G421 (1tf5A)T643 because D (zeta) conformation "forbidden" or filtered. T0547 416 :AILLL 1tf5A 638 :AIAAY T0547 422 :DKQ 1tf5A 644 :PRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=72704 # 1h6gA.416.217 read from T0547.t04.many.frag # found chain 1h6gA in template set Warning: unaligning (T0547)Q424 (1h6gA)P602 because C (cis) conformation "forbidden" or filtered. T0547 416 :AILLLGDK 1h6gA 594 :AVEALSSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=72705 # 1w6sA.416.494 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)A416 because of BadResidue code BAD_PEPTIDE in next template residue (1w6sA)L496 Warning: unaligning (T0547)I417 because of BadResidue code BAD_PEPTIDE at template residue (1w6sA)L496 T0547 418 :LLLGDKQ 1w6sA 497 :KARDSDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=72706 # 1rlr.416.488 read from T0547.t04.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)K423 (1rlr)Q496 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AILLLGD 1rlr 489 :LDALLDY T0547 424 :Q 1rlr 497 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=72708 # 1vqrA.416.67 read from T0547.t04.many.frag # found chain 1vqrA in template set Warning: unaligning (T0547)G421 (1vqrA)N61 because G (3-10) conformation "forbidden" or filtered. T0547 416 :AILLL 1vqrA 56 :LLQLA T0547 422 :DKQ 1vqrA 62 :SPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=72710 # 1ug3A.416.253 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 416 :AILLLGDKQ 1ug3A 1487 :VCYSAIIFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72711 # 1knwA.417.378 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G421 (1knwA)S383 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1knwA)Y386 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLL 1knwA 379 :GASM T0547 422 :DK 1knwA 384 :SN T0547 425 :N 1knwA 387 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=72714 # 1wd3A.417.290 read from T0547.t04.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)L418 (1wd3A)G309 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L419 (1wd3A)V310 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1wd3A)G314 because S (epsilon) conformation "forbidden" or filtered. T0547 417 :I 1wd3A 308 :E T0547 420 :LGD 1wd3A 311 :MTS T0547 424 :QN 1wd3A 315 :YP Number of specific fragments extracted= 3 number of extra gaps= 2 total=72717 # 1ak0.417.93 read from T0547.t04.many.frag # found chain 1ak0 in training set T0547 417 :ILLLGDKQN 1ak0 94 :TQRVSDSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=72718 # 1gw5A.417.353 read from T0547.t04.many.frag # found chain 1gw5A in template set Warning: unaligning (T0547)G421 (1gw5A)S358 because G (3-10) conformation "forbidden" or filtered. T0547 417 :ILLL 1gw5A 354 :CTLA T0547 422 :DKQN 1gw5A 359 :SEFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=72720 # 1y93A.417.116 read from T0547.t04.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)D422 (1y93A)L226 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1y93A)S229 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLLG 1y93A 221 :GHSLG T0547 423 :KQ 1y93A 227 :GH Number of specific fragments extracted= 2 number of extra gaps= 2 total=72722 # 7odcA.417.389 read from T0547.t04.many.frag # found chain 7odcA in training set T0547 417 :ILLLGDKQN 7odcA 390 :TVAAASTFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=72723 # 1u7gA.417.270 read from T0547.t04.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)C276 Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)C276 T0547 417 :ILLL 1u7gA 271 :GVTP T0547 423 :KQN 1u7gA 277 :GYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=72725 # 2aqjA.417.284 read from T0547.t04.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)G421 (2aqjA)S289 because E (beta_S) conformation "forbidden" or filtered. T0547 417 :ILLL 2aqjA 285 :GYVF T0547 422 :DKQN 2aqjA 290 :SHFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=72727 # 1wuaA.417.316 read from T0547.t04.many.frag # found chain 1wuaA in template set Warning: unaligning (T0547)G421 (1wuaA)A321 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1wuaA)P322 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLL 1wuaA 317 :ITAL T0547 423 :KQN 1wuaA 323 :STM Number of specific fragments extracted= 2 number of extra gaps= 1 total=72729 # 1wgzA.417.376 read from T0547.t04.many.frag # found chain 1wgzA in template set Warning: unaligning (T0547)K423 (1wgzA)G383 because L (left) conformation "forbidden" or filtered. T0547 417 :ILLLGD 1wgzA 377 :ELALFR T0547 424 :QN 1wgzA 384 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=72731 # 1xm9A.417.308 read from T0547.t04.many.frag # found chain 1xm9A in template set Warning: unaligning (T0547)Q424 (1xm9A)G559 because Y (epsilon') conformation "forbidden" or filtered. T0547 417 :ILLLGDK 1xm9A 552 :QNLTASK T0547 425 :N 1xm9A 560 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=72733 # 1r0pA.417.144 read from T0547.t04.many.frag # found chain 1r0pA in training set T0547 417 :ILLLGDKQN 1r0pA 1193 :KFLASKKFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72734 # 1sg6A.417.299 read from T0547.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)K423 (1sg6A)G306 because L (left) conformation "forbidden" or filtered. T0547 417 :ILLLGD 1sg6A 300 :ELARHL T0547 424 :QN 1sg6A 307 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=72736 # 1vns.417.311 read from T0547.t04.many.frag # found chain 1vns in training set T0547 417 :ILLLGDKQN 1vns 312 :AVTYKKEED Number of specific fragments extracted= 1 number of extra gaps= 0 total=72737 # 1zx0A.417.174 read from T0547.t04.many.frag # found chain 1zx0A in template set T0547 417 :ILLLGDKQN 1zx0A 175 :GELMKSKYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72738 # 1uw4B.417.186 read from T0547.t04.many.frag # found chain 1uw4B in template set Warning: unaligning (T0547)D422 (1uw4B)L959 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLLG 1uw4B 954 :WWKKS T0547 423 :KQN 1uw4B 960 :EVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=72740 # 1gsoA.417.232 read from T0547.t04.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)I417 (1gsoA)G231 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L418 (1gsoA)A232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1gsoA)P235 because C (cis) conformation "forbidden" or filtered. T0547 419 :LL 1gsoA 233 :YS T0547 422 :DKQN 1gsoA 236 :APVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=72742 # 2d0oA.417.536 read from T0547.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0547)G421 (2d0oA)S541 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (2d0oA)T543 because G (3-10) conformation "forbidden" or filtered. T0547 417 :ILLL 2d0oA 537 :LRQV T0547 422 :D 2d0oA 542 :P T0547 424 :QN 2d0oA 544 :GN Number of specific fragments extracted= 3 number of extra gaps= 2 total=72745 # 1tq5A.417.115 read from T0547.t04.many.frag # found chain 1tq5A in training set Warning: unaligning (T0547)Q424 (1tq5A)E123 because E (beta_S) conformation "forbidden" or filtered. T0547 417 :ILLLGDK 1tq5A 116 :QIWIMPE T0547 425 :N 1tq5A 124 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=72747 # 1svsA.417.158 read from T0547.t04.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)D422 (1svsA)P165 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1svsA)N166 because L (left) conformation "forbidden" or filtered. T0547 417 :ILLLG 1svsA 160 :DRIAQ T0547 424 :QN 1svsA 167 :YI Number of specific fragments extracted= 2 number of extra gaps= 1 total=72749 1yozA expands to /projects/compbio/data/pdb/1yoz.pdb.gz 1yozA:# 1yozA.417.46 read from T0547.t04.many.frag # adding 1yozA to template set # found chain 1yozA in template set Warning: unaligning (T0547)K423 (1yozA)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 417 :ILLLGD 1yozA 55 :LNLYKS T0547 424 :QN 1yozA 62 :KA Number of specific fragments extracted= 2 number of extra gaps= 1 total=72751 # 1h6gA.417.218 read from T0547.t04.many.frag # found chain 1h6gA in template set Warning: unaligning (T0547)K423 (1h6gA)D601 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1h6gA)P602 because C (cis) conformation "forbidden" or filtered. T0547 417 :ILLLGD 1h6gA 595 :VEALSS T0547 425 :N 1h6gA 603 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=72753 # 1ga6A.417.299 read from T0547.t04.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)G421 (1ga6A)N304 because G (3-10) conformation "forbidden" or filtered. T0547 417 :ILLL 1ga6A 300 :LQSA T0547 422 :DKQN 1ga6A 305 :SNSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=72755 # 2btoA.417.240 read from T0547.t04.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)G421 (2btoA)R245 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2btoA)E253 T0547 417 :ILLL 2btoA 241 :TASM Number of specific fragments extracted= 1 number of extra gaps= 1 total=72756 # 1vqrA.417.68 read from T0547.t04.many.frag # found chain 1vqrA in template set Warning: unaligning (T0547)G421 (1vqrA)N61 because G (3-10) conformation "forbidden" or filtered. T0547 417 :ILLL 1vqrA 57 :LQLA T0547 422 :DKQN 1vqrA 62 :SPYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=72758 # 1pc6A.417.56 read from T0547.t04.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)G421 (1pc6A)E61 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1pc6A)H63 because L (left) conformation "forbidden" or filtered. T0547 417 :ILLL 1pc6A 57 :SRQV T0547 422 :D 1pc6A 62 :W T0547 424 :QN 1pc6A 64 :GR Number of specific fragments extracted= 3 number of extra gaps= 2 total=72761 # 1w9cA.417.124 read from T0547.t04.many.frag # found chain 1w9cA in template set Warning: unaligning (T0547)G421 (1w9cA)N835 because G (3-10) conformation "forbidden" or filtered. T0547 417 :ILLL 1w9cA 831 :LNMI T0547 422 :DKQN 1w9cA 836 :KDFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=72763 # 1w6sA.417.495 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)I417 because of BadResidue code BAD_PEPTIDE at template residue (1w6sA)L496 T0547 418 :LLLGDKQN 1w6sA 497 :KARDSDTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=72764 # 1q67A.417.140 read from T0547.t04.many.frag # found chain 1q67A in template set Warning: unaligning (T0547)N425 (1q67A)N149 because Y (epsilon') conformation "forbidden" or filtered. T0547 417 :ILLLGDKQ 1q67A 141 :GLIILNRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=72765 # 1h54A.417.440 read from T0547.t04.many.frag # found chain 1h54A in template set T0547 417 :ILLLGDKQN 1h54A 441 :RYTGDDSYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=72766 # 1wd3A.418.291 read from T0547.t04.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)L419 (1wd3A)V310 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1wd3A)S313 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1wd3A)G314 because S (epsilon) conformation "forbidden" or filtered. T0547 418 :L 1wd3A 309 :G T0547 420 :LG 1wd3A 311 :MT T0547 424 :QNP 1wd3A 315 :YPS Number of specific fragments extracted= 3 number of extra gaps= 2 total=72769 # 1knwA.418.379 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G421 (1knwA)S383 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1knwA)S384 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1knwA)S388 because L (left) conformation "forbidden" or filtered. T0547 418 :LLL 1knwA 380 :ASM T0547 423 :KQN 1knwA 385 :NYN Number of specific fragments extracted= 2 number of extra gaps= 2 total=72771 # 7odcA.418.390 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G421 (7odcA)A394 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. T0547 418 :LLL 7odcA 391 :VAA T0547 422 :DKQN 7odcA 395 :STFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=72773 # 1u7gA.418.271 read from T0547.t04.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)C276 Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)C276 T0547 418 :LLL 1u7gA 272 :VTP T0547 423 :KQNP 1u7gA 277 :GYIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=72775 # 1ak0.418.94 read from T0547.t04.many.frag # found chain 1ak0 in training set T0547 418 :LLLGDKQNP 1ak0 95 :QRVSDSSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72776 # 1wgzA.418.377 read from T0547.t04.many.frag # found chain 1wgzA in template set Warning: unaligning (T0547)K423 (1wgzA)G383 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1wgzA)S386 because E (beta_S) conformation "forbidden" or filtered. T0547 418 :LLLGD 1wgzA 378 :LALFR T0547 424 :QN 1wgzA 384 :EL Number of specific fragments extracted= 2 number of extra gaps= 2 total=72778 # 2aqjA.418.285 read from T0547.t04.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)L420 (2aqjA)F288 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (2aqjA)S289 because E (beta_S) conformation "forbidden" or filtered. T0547 418 :LL 2aqjA 286 :YV T0547 422 :DKQNP 2aqjA 290 :SHFTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=72780 # 1gw5A.418.354 read from T0547.t04.many.frag # found chain 1gw5A in template set Warning: unaligning (T0547)D422 (1gw5A)S359 because E (beta_S) conformation "forbidden" or filtered. T0547 418 :LLLG 1gw5A 355 :TLAS T0547 423 :KQNP 1gw5A 360 :EFSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=72782 # 1tq5A.418.116 read from T0547.t04.many.frag # found chain 1tq5A in training set Warning: unaligning (T0547)G421 (1tq5A)M120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1tq5A)N124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1tq5A)G125 because L (left) conformation "forbidden" or filtered. T0547 418 :LLL 1tq5A 117 :IWI T0547 422 :DKQ 1tq5A 121 :PEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=72784 # 1r0pA.418.145 read from T0547.t04.many.frag # found chain 1r0pA in training set Warning: unaligning (T0547)N425 (1r0pA)V1201 because P (beta_P) conformation "forbidden" or filtered. T0547 418 :LLLGDKQ 1r0pA 1194 :FLASKKF T0547 426 :P 1r0pA 1202 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=72786 # 1wuaA.418.317 read from T0547.t04.many.frag # found chain 1wuaA in template set T0547 418 :LLLGDKQNP 1wuaA 318 :TALAPSTMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72787 # 1yozA.418.47 read from T0547.t04.many.frag # found chain 1yozA in template set T0547 418 :LLLGDKQNP 1yozA 56 :NLYKSGKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72788 # 1y93A.418.117 read from T0547.t04.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)N425 (1y93A)S229 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1y93A)S230 because G (3-10) conformation "forbidden" or filtered. T0547 418 :LLLGDKQ 1y93A 222 :HSLGLGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=72789 # 1sg6A.418.300 read from T0547.t04.many.frag # found chain 1sg6A in training set T0547 418 :LLLGDKQNP 1sg6A 301 :LARHLGILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72790 # 1ga6A.418.300 read from T0547.t04.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)G421 (1ga6A)N304 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1ga6A)S305 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1ga6A)N306 because L (left) conformation "forbidden" or filtered. T0547 418 :LLL 1ga6A 301 :QSA T0547 424 :QNP 1ga6A 307 :SLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=72792 # 1h54A.418.441 read from T0547.t04.many.frag # found chain 1h54A in template set Warning: unaligning (T0547)L420 (1h54A)G444 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1h54A)L450 because G (3-10) conformation "forbidden" or filtered. T0547 418 :LL 1h54A 442 :YT T0547 421 :GDKQN 1h54A 445 :DDSYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=72794 # 1q67A.418.141 read from T0547.t04.many.frag # found chain 1q67A in template set T0547 418 :LLLGDKQNP 1q67A 142 :LIILNRINP Number of specific fragments extracted= 1 number of extra gaps= 0 total=72795 # 1gsoA.418.233 read from T0547.t04.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)L418 (1gsoA)A232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1gsoA)P235 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1gsoA)A236 because P (beta_P) conformation "forbidden" or filtered. T0547 419 :LL 1gsoA 233 :YS T0547 423 :KQNP 1gsoA 237 :PVVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=72797 # 2d0oA.418.537 read from T0547.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0547)Q424 (2d0oA)G544 because T (delta_L) conformation "forbidden" or filtered. T0547 418 :LLLGDK 2d0oA 538 :RQVSPT T0547 425 :NP 2d0oA 545 :NI Number of specific fragments extracted= 2 number of extra gaps= 1 total=72799 # 1u24A.418.312 read from T0547.t04.many.frag # found chain 1u24A in template set Warning: unaligning (T0547)N425 (1u24A)Y320 because L (left) conformation "forbidden" or filtered. T0547 418 :LLLGDKQ 1u24A 313 :QENRADG T0547 426 :P 1u24A 321 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=72801 # 1svsA.418.159 read from T0547.t04.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)G421 (1svsA)Q164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1svsA)N166 because L (left) conformation "forbidden" or filtered. T0547 418 :LLL 1svsA 161 :RIA T0547 422 :D 1svsA 165 :P T0547 424 :QNP 1svsA 167 :YIP Number of specific fragments extracted= 3 number of extra gaps= 2 total=72804 # 1vqrA.418.69 read from T0547.t04.many.frag # found chain 1vqrA in template set Warning: unaligning (T0547)D422 (1vqrA)S62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1vqrA)G66 because L (left) conformation "forbidden" or filtered. T0547 418 :LLLG 1vqrA 58 :QLAN T0547 423 :KQN 1vqrA 63 :PYY Number of specific fragments extracted= 2 number of extra gaps= 2 total=72806 # 1uw4B.418.187 read from T0547.t04.many.frag # found chain 1uw4B in template set Warning: unaligning (T0547)N425 (1uw4B)W962 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1uw4B)T963 because Y (epsilon') conformation "forbidden" or filtered. T0547 418 :LLLGDKQ 1uw4B 955 :WKKSLEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=72807 # 1us5A.418.248 read from T0547.t04.many.frag # found chain 1us5A in training set T0547 418 :LLLGDKQNP 1us5A 249 :MLIASERLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=72808 # 1pkhA.418.65 read from T0547.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)D422 (1pkhA)L70 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1pkhA)N71 because L (left) conformation "forbidden" or filtered. T0547 418 :LLLG 1pkhA 66 :LVCP T0547 424 :QNP 1pkhA 72 :YNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=72810 # 2aqlA.418.75 read from T0547.t04.many.frag # found chain 2aqlA in template set Warning: unaligning (T0547)G421 (2aqlA)L229 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2aqlA)L234 because E (beta_S) conformation "forbidden" or filtered. T0547 418 :LLL 2aqlA 226 :NVM T0547 422 :DKQN 2aqlA 230 :GTQL Number of specific fragments extracted= 2 number of extra gaps= 2 total=72812 # 1pc6A.418.57 read from T0547.t04.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)G421 (1pc6A)E61 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1pc6A)H63 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1pc6A)R65 because E (beta_S) conformation "forbidden" or filtered. T0547 418 :LLL 1pc6A 58 :RQV T0547 422 :D 1pc6A 62 :W T0547 424 :Q 1pc6A 64 :G T0547 426 :P 1pc6A 66 :W Number of specific fragments extracted= 4 number of extra gaps= 3 total=72816 # 1ho8A.418.324 read from T0547.t04.many.frag # found chain 1ho8A in template set Warning: unaligning (T0547)D422 (1ho8A)E327 because D (zeta) conformation "forbidden" or filtered. T0547 418 :LLLG 1ho8A 323 :QSLS T0547 423 :KQNP 1ho8A 328 :RKYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=72818 # 1vns.418.312 read from T0547.t04.many.frag # found chain 1vns in training set Warning: unaligning (T0547)G421 (1vns)K316 because P (beta_P) conformation "forbidden" or filtered. T0547 418 :LLL 1vns 313 :VTY T0547 422 :DKQNP 1vns 317 :KEEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=72820 # 2f5xA.418.239 read from T0547.t04.many.frag # found chain 2f5xA in training set T0547 418 :LLLGDKQNP 2f5xA 228 :GMWAPKGTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=72821 # 1wd3A.419.292 read from T0547.t04.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)L419 (1wd3A)V310 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1wd3A)T312 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1wd3A)G314 because S (epsilon) conformation "forbidden" or filtered. T0547 420 :L 1wd3A 311 :M T0547 422 :D 1wd3A 313 :S T0547 424 :QNPA 1wd3A 315 :YPSD Number of specific fragments extracted= 3 number of extra gaps= 3 total=72824 # 1u7gA.419.272 read from T0547.t04.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)C276 Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)C276 T0547 419 :LL 1u7gA 273 :TP T0547 423 :KQNPA 1u7gA 277 :GYIGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=72826 # 2aqjA.419.286 read from T0547.t04.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)L420 (2aqjA)F288 because Y (epsilon') conformation "forbidden" or filtered. T0547 419 :L 2aqjA 287 :V T0547 421 :GDKQNPA 2aqjA 289 :SSHFTSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=72828 # 1knwA.419.380 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G421 (1knwA)S383 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1knwA)S384 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1knwA)S388 because L (left) conformation "forbidden" or filtered. T0547 419 :LL 1knwA 381 :SM T0547 423 :KQN 1knwA 385 :NYN T0547 427 :A 1knwA 389 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=72831 # 7odcA.419.391 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P426 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. T0547 419 :LLGDKQN 7odcA 392 :AAASTFN T0547 427 :A 7odcA 400 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=72833 # 1wgzA.419.378 read from T0547.t04.many.frag # found chain 1wgzA in template set Warning: unaligning (T0547)K423 (1wgzA)G383 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1wgzA)S386 because E (beta_S) conformation "forbidden" or filtered. T0547 419 :LLGD 1wgzA 379 :ALFR T0547 424 :QN 1wgzA 384 :EL T0547 427 :A 1wgzA 387 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=72836 # 1ak0.419.95 read from T0547.t04.many.frag # found chain 1ak0 in training set Warning: unaligning (T0547)G421 (1ak0)S98 because G (3-10) conformation "forbidden" or filtered. T0547 419 :LL 1ak0 96 :RV T0547 422 :DKQNPA 1ak0 99 :DSSLSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=72838 # 1gw5A.419.355 read from T0547.t04.many.frag # found chain 1gw5A in template set T0547 419 :LLGDKQNPA 1gw5A 356 :LASSEFSHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72839 # 1yozA.419.48 read from T0547.t04.many.frag # found chain 1yozA in template set Warning: unaligning (T0547)K423 (1yozA)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 419 :LLGD 1yozA 57 :LYKS T0547 424 :QNPA 1yozA 62 :KAEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=72841 # 1r0pA.419.146 read from T0547.t04.many.frag # found chain 1r0pA in training set Warning: unaligning (T0547)N425 (1r0pA)V1201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1r0pA)R1203 because T (delta_L) conformation "forbidden" or filtered. T0547 419 :LLGDKQ 1r0pA 1195 :LASKKF T0547 426 :P 1r0pA 1202 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=72843 # 1h54A.419.442 read from T0547.t04.many.frag # found chain 1h54A in template set Warning: unaligning (T0547)P426 (1h54A)L450 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1h54A)H451 because Y (epsilon') conformation "forbidden" or filtered. T0547 419 :LLGDKQN 1h54A 443 :TGDDSYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=72844 # 1ga6A.419.301 read from T0547.t04.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)G421 (1ga6A)N304 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1ga6A)S305 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1ga6A)N306 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1ga6A)P311 T0547 419 :LL 1ga6A 302 :SA T0547 424 :QNP 1ga6A 307 :SLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=72846 # 1gsoA.419.234 read from T0547.t04.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)G421 (1gsoA)P235 because C (cis) conformation "forbidden" or filtered. T0547 419 :LL 1gsoA 233 :YS T0547 422 :DKQNPA 1gsoA 236 :APVVTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=72848 # 1u02A.419.115 read from T0547.t04.many.frag # found chain 1u02A in template set T0547 419 :LLGDKQNPA 1u02A 116 :LYHLGLMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=72849 # 1sg6A.419.301 read from T0547.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)K423 (1sg6A)G306 because L (left) conformation "forbidden" or filtered. T0547 419 :LLGD 1sg6A 302 :ARHL T0547 424 :QNPA 1sg6A 307 :ILKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=72851 # 1tq5A.419.117 read from T0547.t04.many.frag # found chain 1tq5A in training set Warning: unaligning (T0547)N425 (1tq5A)N124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1tq5A)G125 because L (left) conformation "forbidden" or filtered. T0547 419 :LLGDKQ 1tq5A 118 :WIMPEE T0547 427 :A 1tq5A 126 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=72853 # 1svsA.419.160 read from T0547.t04.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)G421 (1svsA)Q164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1svsA)N166 because L (left) conformation "forbidden" or filtered. T0547 419 :LL 1svsA 162 :IA T0547 422 :D 1svsA 165 :P T0547 424 :QNPA 1svsA 167 :YIPT Number of specific fragments extracted= 3 number of extra gaps= 2 total=72856 # 1us5A.419.249 read from T0547.t04.many.frag # found chain 1us5A in training set Warning: unaligning (T0547)N425 (1us5A)L256 because P (beta_P) conformation "forbidden" or filtered. T0547 419 :LLGDKQ 1us5A 250 :LIASER T0547 426 :PA 1us5A 257 :SE Number of specific fragments extracted= 2 number of extra gaps= 1 total=72858 # 1wuaA.419.318 read from T0547.t04.many.frag # found chain 1wuaA in template set Warning: unaligning (T0547)G421 (1wuaA)A321 because P (beta_P) conformation "forbidden" or filtered. T0547 419 :LL 1wuaA 319 :AL T0547 422 :DKQNPA 1wuaA 322 :PSTMKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=72860 # 1vqrA.419.70 read from T0547.t04.many.frag # found chain 1vqrA in template set Warning: unaligning (T0547)N425 (1vqrA)Y65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1vqrA)G66 because L (left) conformation "forbidden" or filtered. T0547 419 :LLGDKQ 1vqrA 59 :LANSPY T0547 427 :A 1vqrA 67 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=72862 # 1m40A.419.167 read from T0547.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 T0547 419 :LLGDKQNP 1m40A 193 :LLTGELLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=72863 # 2f5xA.419.240 read from T0547.t04.many.frag # found chain 2f5xA in training set T0547 419 :LLGDKQNPA 2f5xA 229 :MWAPKGTPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=72864 # 1ho8A.419.325 read from T0547.t04.many.frag # found chain 1ho8A in template set Warning: unaligning (T0547)K423 (1ho8A)R328 because Y (epsilon') conformation "forbidden" or filtered. T0547 419 :LLGD 1ho8A 324 :SLSE T0547 424 :QNPA 1ho8A 329 :KYSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=72866 # 1u24A.419.313 read from T0547.t04.many.frag # found chain 1u24A in template set T0547 419 :LLGDKQNPA 1u24A 314 :ENRADGYQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=72867 # 1pkhA.419.66 read from T0547.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)K423 (1pkhA)N71 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1pkhA)N73 because L (left) conformation "forbidden" or filtered. T0547 419 :LLGD 1pkhA 67 :VCPL T0547 424 :Q 1pkhA 72 :Y T0547 426 :PA 1pkhA 74 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=72870 # 1nc5A.419.289 read from T0547.t04.many.frag # found chain 1nc5A in training set Warning: unaligning (T0547)K423 (1nc5A)G294 because T (delta_L) conformation "forbidden" or filtered. T0547 419 :LLGD 1nc5A 290 :GINK T0547 424 :QNPA 1nc5A 295 :YLDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=72872 1u61A expands to /projects/compbio/data/pdb/1u61.pdb.gz 1u61A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1u61A.419.61 read from T0547.t04.many.frag # adding 1u61A to template set # found chain 1u61A in template set Warning: unaligning (T0547)K423 (1u61A)A63 because L (left) conformation "forbidden" or filtered. T0547 419 :LLGD 1u61A 59 :LLET T0547 424 :QNPA 1u61A 64 :FLTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=72874 # 1uuhA.419.35 read from T0547.t04.many.frag # found chain 1uuhA in template set Warning: unaligning (T0547)D422 (1uuhA)S58 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1uuhA)P61 because P (beta_P) conformation "forbidden" or filtered. T0547 419 :LLG 1uuhA 55 :AFN T0547 423 :KQ 1uuhA 59 :TL T0547 426 :PA 1uuhA 62 :TM Number of specific fragments extracted= 3 number of extra gaps= 2 total=72877 # 1y93A.419.118 read from T0547.t04.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)K423 (1y93A)G227 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1y93A)S230 because G (3-10) conformation "forbidden" or filtered. T0547 419 :LLGD 1y93A 223 :SLGL T0547 424 :QN 1y93A 228 :HS T0547 427 :A 1y93A 231 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=72880 1kpsB expands to /projects/compbio/data/pdb/1kps.pdb.gz 1kpsB:# 1kpsB.419.128 read from T0547.t04.many.frag # adding 1kpsB to template set # found chain 1kpsB in template set Warning: unaligning (T0547)G421 (1kpsB)R549 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1kpsB)Q550 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1kpsB)F553 because P (beta_P) conformation "forbidden" or filtered. T0547 419 :LL 1kpsB 547 :VV T0547 423 :KQ 1kpsB 551 :DY T0547 426 :PA 1kpsB 554 :PK Number of specific fragments extracted= 3 number of extra gaps= 2 total=72883 # 1u7gA.420.273 read from T0547.t04.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)C276 Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)C276 T0547 420 :L 1u7gA 274 :P T0547 423 :KQNPAD 1u7gA 277 :GYIGVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=72885 # 1wd3A.420.293 read from T0547.t04.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)K423 (1wd3A)G314 because S (epsilon) conformation "forbidden" or filtered. T0547 420 :LGD 1wd3A 311 :MTS T0547 424 :QNPAD 1wd3A 315 :YPSDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=72887 # 2aqjA.420.287 read from T0547.t04.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)L420 (2aqjA)F288 because Y (epsilon') conformation "forbidden" or filtered. T0547 421 :GDKQNPAD 2aqjA 289 :SSHFTSRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=72888 # 1ak0.420.96 read from T0547.t04.many.frag # found chain 1ak0 in training set Warning: unaligning (T0547)G421 (1ak0)S98 because G (3-10) conformation "forbidden" or filtered. T0547 420 :L 1ak0 97 :V T0547 422 :DKQNPAD 1ak0 99 :DSSLSSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=72890 # 1wgzA.420.379 read from T0547.t04.many.frag # found chain 1wgzA in template set Warning: unaligning (T0547)K423 (1wgzA)G383 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1wgzA)S386 because E (beta_S) conformation "forbidden" or filtered. T0547 420 :LGD 1wgzA 380 :LFR T0547 424 :QN 1wgzA 384 :EL T0547 427 :AD 1wgzA 387 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=72893 # 1yozA.420.49 read from T0547.t04.many.frag # found chain 1yozA in template set Warning: unaligning (T0547)K423 (1yozA)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 420 :LGD 1yozA 58 :YKS T0547 424 :QNPAD 1yozA 62 :KAEKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=72895 # 1h54A.420.443 read from T0547.t04.many.frag # found chain 1h54A in template set Warning: unaligning (T0547)L420 (1h54A)G444 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1h54A)D445 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1h54A)L450 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1h54A)H451 because Y (epsilon') conformation "forbidden" or filtered. T0547 422 :DKQN 1h54A 446 :DSYV T0547 428 :D 1h54A 452 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=72897 # 1u02A.420.116 read from T0547.t04.many.frag # found chain 1u02A in template set Warning: unaligning (T0547)G421 (1u02A)H118 because E (beta_S) conformation "forbidden" or filtered. T0547 420 :L 1u02A 117 :Y T0547 422 :DKQNPAD 1u02A 119 :LGLMGAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=72899 # 1knwA.420.381 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G421 (1knwA)S383 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1knwA)S384 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1knwA)N387 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1knwA)S388 because L (left) conformation "forbidden" or filtered. T0547 420 :L 1knwA 382 :M T0547 423 :KQ 1knwA 385 :NY T0547 427 :AD 1knwA 389 :RP Number of specific fragments extracted= 3 number of extra gaps= 2 total=72902 # 1nc5A.420.290 read from T0547.t04.many.frag # found chain 1nc5A in training set Warning: unaligning (T0547)K423 (1nc5A)G294 because T (delta_L) conformation "forbidden" or filtered. T0547 420 :LGD 1nc5A 291 :INK T0547 424 :QNPAD 1nc5A 295 :YLDRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=72904 # 7odcA.420.392 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P426 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (7odcA)Q401 because P (beta_P) conformation "forbidden" or filtered. T0547 420 :LGDKQN 7odcA 393 :AASTFN T0547 427 :A 7odcA 400 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=72906 # 1u61A.420.62 read from T0547.t04.many.frag # found chain 1u61A in template set Warning: unaligning (T0547)K423 (1u61A)A63 because L (left) conformation "forbidden" or filtered. T0547 420 :LGD 1u61A 60 :LET T0547 424 :QNPAD 1u61A 64 :FLTEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=72908 # 1ga6A.420.302 read from T0547.t04.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)G421 (1ga6A)N304 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1ga6A)S305 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1ga6A)N306 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1ga6A)P311 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1ga6A)P311 T0547 420 :L 1ga6A 303 :A T0547 424 :QNP 1ga6A 307 :SLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=72910 # 1gsoA.420.235 read from T0547.t04.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)G421 (1gsoA)P235 because C (cis) conformation "forbidden" or filtered. T0547 420 :L 1gsoA 234 :S T0547 422 :DKQNPAD 1gsoA 236 :APVVTDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=72912 # 1i1wA.420.283 read from T0547.t04.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)K423 (1i1wA)N287 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1i1wA)F288 because L (left) conformation "forbidden" or filtered. T0547 420 :LGD 1i1wA 284 :FDG T0547 425 :NPAD 1i1wA 289 :NPKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=72914 # 1x9iA.420.231 read from T0547.t04.many.frag # found chain 1x9iA in training set Warning: unaligning (T0547)G421 (1x9iA)T233 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1x9iA)S234 because Y (epsilon') conformation "forbidden" or filtered. T0547 420 :L 1x9iA 232 :L T0547 423 :KQNPAD 1x9iA 235 :PHIPKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=72916 # 1m40A.420.168 read from T0547.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)N425 (1m40A)L199 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0547 420 :LGDKQ 1m40A 194 :LTGEL T0547 426 :P 1m40A 200 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=72918 # 1svsA.420.161 read from T0547.t04.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)G421 (1svsA)Q164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1svsA)N166 because L (left) conformation "forbidden" or filtered. T0547 420 :L 1svsA 163 :A T0547 422 :D 1svsA 165 :P T0547 424 :QNPAD 1svsA 167 :YIPTQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=72921 # 1us5A.420.250 read from T0547.t04.many.frag # found chain 1us5A in training set Warning: unaligning (T0547)G421 (1us5A)A252 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1us5A)L256 because P (beta_P) conformation "forbidden" or filtered. T0547 420 :L 1us5A 251 :I T0547 422 :DKQ 1us5A 253 :SER T0547 426 :PAD 1us5A 257 :SEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=72924 # 1pc6A.420.59 read from T0547.t04.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)G421 (1pc6A)E61 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1pc6A)W62 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1pc6A)H63 because L (left) conformation "forbidden" or filtered. T0547 420 :L 1pc6A 60 :V T0547 424 :QNPAD 1pc6A 64 :GRWLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=72926 # 1gw5A.420.356 read from T0547.t04.many.frag # found chain 1gw5A in template set Warning: unaligning (T0547)G421 (1gw5A)S358 because G (3-10) conformation "forbidden" or filtered. T0547 420 :L 1gw5A 357 :A T0547 422 :DKQNPAD 1gw5A 359 :SEFSHEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=72928 # 1u24A.420.314 read from T0547.t04.many.frag # found chain 1u24A in template set T0547 420 :LGDKQNPAD 1u24A 315 :NRADGYQTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=72929 # 2f5xA.420.241 read from T0547.t04.many.frag # found chain 2f5xA in training set Warning: unaligning (T0547)Q424 (2f5xA)G234 because T (delta_L) conformation "forbidden" or filtered. T0547 420 :LGDK 2f5xA 230 :WAPK T0547 425 :NPAD 2f5xA 235 :TPKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=72931 # 1pkhA.420.67 read from T0547.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)G421 (1pkhA)P69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1pkhA)N73 because L (left) conformation "forbidden" or filtered. T0547 420 :L 1pkhA 68 :C T0547 422 :DKQ 1pkhA 70 :LNY T0547 426 :PAD 1pkhA 74 :LTE Number of specific fragments extracted= 3 number of extra gaps= 2 total=72934 # 1uuhA.420.36 read from T0547.t04.many.frag # found chain 1uuhA in template set Warning: unaligning (T0547)D422 (1uuhA)S58 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1uuhA)P61 because P (beta_P) conformation "forbidden" or filtered. T0547 420 :LG 1uuhA 56 :FN T0547 423 :KQ 1uuhA 59 :TL T0547 426 :PAD 1uuhA 62 :TMA Number of specific fragments extracted= 3 number of extra gaps= 2 total=72937 # 1kpsB.420.129 read from T0547.t04.many.frag # found chain 1kpsB in template set Warning: unaligning (T0547)G421 (1kpsB)R549 because G (3-10) conformation "forbidden" or filtered. T0547 420 :L 1kpsB 548 :V T0547 422 :DKQNPAD 1kpsB 550 :QDYFPKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=72939 # 1tfr.420.257 read from T0547.t04.many.frag # found chain 1tfr in template set Warning: unaligning (T0547)N425 (1tfr)I263 because P (beta_P) conformation "forbidden" or filtered. T0547 420 :LGDKQ 1tfr 258 :IDFDY T0547 426 :PAD 1tfr 264 :PDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=72941 # 1mtyD.420.277 read from T0547.t04.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)A427 (1mtyD)E299 because Y (epsilon') conformation "forbidden" or filtered. T0547 420 :LGDKQNP 1mtyD 292 :YGSKFKV T0547 428 :D 1mtyD 300 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=72943 # 1sg6A.420.302 read from T0547.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)K423 (1sg6A)G306 because L (left) conformation "forbidden" or filtered. T0547 420 :LGD 1sg6A 303 :RHL T0547 424 :QNPAD 1sg6A 307 :ILKGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=72945 # 1gakA.420.70 read from T0547.t04.many.frag # found chain 1gakA in template set Warning: unaligning (T0547)Q424 (1gakA)H75 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1gakA)V78 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1gakA)N79 because Y (epsilon') conformation "forbidden" or filtered. T0547 420 :LGDK 1gakA 71 :LQLK T0547 425 :NP 1gakA 76 :LP Number of specific fragments extracted= 2 number of extra gaps= 2 total=72947 # 1u7gA.421.274 read from T0547.t04.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)C276 Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)C276 T0547 423 :KQNPADL 1u7gA 277 :GYIGVGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=72948 # 1wd3A.421.294 read from T0547.t04.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)K423 (1wd3A)G314 because S (epsilon) conformation "forbidden" or filtered. T0547 421 :GD 1wd3A 312 :TS T0547 424 :QNPADL 1wd3A 315 :YPSDDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=72950 # 2aqjA.421.288 read from T0547.t04.many.frag # found chain 2aqjA in training set T0547 421 :GDKQNPADL 2aqjA 289 :SSHFTSRDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=72951 # 1h54A.421.444 read from T0547.t04.many.frag # found chain 1h54A in template set Warning: unaligning (T0547)P426 (1h54A)L450 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1h54A)H451 because Y (epsilon') conformation "forbidden" or filtered. T0547 421 :GDKQN 1h54A 445 :DDSYV T0547 428 :DL 1h54A 452 :EG Number of specific fragments extracted= 2 number of extra gaps= 1 total=72953 # 1u61A.421.63 read from T0547.t04.many.frag # found chain 1u61A in template set T0547 421 :GDKQNPADL 1u61A 61 :ETAFLTEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72954 # 1ga6A.421.303 read from T0547.t04.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)G421 (1ga6A)N304 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1ga6A)P311 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1ga6A)P311 T0547 422 :DKQNP 1ga6A 305 :SNSLG T0547 429 :L 1ga6A 312 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=72956 # 1pc6A.421.60 read from T0547.t04.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)A427 (1pc6A)L67 because E (beta_S) conformation "forbidden" or filtered. T0547 421 :GDKQNP 1pc6A 61 :EWHGRW T0547 428 :DL 1pc6A 68 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=72958 # 1i1wA.421.284 read from T0547.t04.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)G421 (1i1wA)D285 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1i1wA)F288 because L (left) conformation "forbidden" or filtered. T0547 422 :DK 1i1wA 286 :GN T0547 425 :NPADL 1i1wA 289 :NPKPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=72960 1td6A expands to /projects/compbio/data/pdb/1td6.pdb.gz 1td6A:# 1td6A.421.111 read from T0547.t04.many.frag # adding 1td6A to template set # found chain 1td6A in template set Warning: unaligning (T0547)P426 (1td6A)S105 because D (zeta) conformation "forbidden" or filtered. T0547 421 :GDKQN 1td6A 100 :NAALA T0547 427 :ADL 1td6A 106 :LPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=72962 # 1yozA.421.50 read from T0547.t04.many.frag # found chain 1yozA in template set T0547 421 :GDKQNPADL 1yozA 59 :KSGKAEKEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72963 # 1svsA.421.162 read from T0547.t04.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)G421 (1svsA)Q164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1svsA)P165 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1svsA)N166 because L (left) conformation "forbidden" or filtered. T0547 424 :QNPADL 1svsA 167 :YIPTQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=72964 # 1u24A.421.315 read from T0547.t04.many.frag # found chain 1u24A in template set T0547 421 :GDKQNPADL 1u24A 316 :RADGYQTPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=72965 # 1ak0.421.97 read from T0547.t04.many.frag # found chain 1ak0 in training set Warning: unaligning (T0547)G421 (1ak0)S98 because G (3-10) conformation "forbidden" or filtered. T0547 422 :DKQNPADL 1ak0 99 :DSSLSSEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=72966 # 1nc5A.421.291 read from T0547.t04.many.frag # found chain 1nc5A in training set Warning: unaligning (T0547)N425 (1nc5A)L296 because E (beta_S) conformation "forbidden" or filtered. T0547 421 :GDKQ 1nc5A 292 :NKGY T0547 426 :PADL 1nc5A 297 :DRAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=72968 # 1mtyD.421.278 read from T0547.t04.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)A427 (1mtyD)E299 because Y (epsilon') conformation "forbidden" or filtered. T0547 421 :GDKQNP 1mtyD 293 :GSKFKV T0547 428 :DL 1mtyD 300 :PW Number of specific fragments extracted= 2 number of extra gaps= 1 total=72970 # 1x9iA.421.232 read from T0547.t04.many.frag # found chain 1x9iA in training set Warning: unaligning (T0547)D422 (1x9iA)S234 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1x9iA)I237 because P (beta_P) conformation "forbidden" or filtered. T0547 421 :G 1x9iA 233 :T T0547 423 :KQ 1x9iA 235 :PH T0547 426 :PADL 1x9iA 238 :PKEH Number of specific fragments extracted= 3 number of extra gaps= 2 total=72973 # 1q5zA.421.62 read from T0547.t04.many.frag # found chain 1q5zA in training set Warning: unaligning (T0547)G421 (1q5zA)P555 because P (beta_P) conformation "forbidden" or filtered. T0547 422 :DKQNPADL 1q5zA 556 :DTSTPFPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=72974 # 1t1uA.421.475 read from T0547.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1t1uA)D478 Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1t1uA)D478 Warning: unaligning (T0547)K423 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1t1uA)H479 Warning: unaligning (T0547)Q424 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1t1uA)K480 Warning: unaligning (T0547)P426 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1t1uA)M483 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1t1uA)M483 T0547 425 :N 1t1uA 481 :A T0547 428 :DL 1t1uA 484 :PA Number of specific fragments extracted= 2 number of extra gaps= 2 total=72976 # 1gsoA.421.236 read from T0547.t04.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)G421 (1gsoA)P235 because C (cis) conformation "forbidden" or filtered. T0547 422 :DKQNPADL 1gsoA 236 :APVVTDDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=72977 # 1gakA.421.71 read from T0547.t04.many.frag # found chain 1gakA in template set Warning: unaligning (T0547)Q424 (1gakA)H75 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1gakA)V78 because D (zeta) conformation "forbidden" or filtered. T0547 421 :GDK 1gakA 72 :QLK T0547 425 :NP 1gakA 76 :LP T0547 428 :DL 1gakA 79 :NK Number of specific fragments extracted= 3 number of extra gaps= 2 total=72980 # 1m40A.421.169 read from T0547.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)G421 (1m40A)T195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1m40A)L199 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0547 422 :DKQ 1m40A 196 :GEL T0547 426 :P 1m40A 200 :T T0547 429 :L 1m40A 203 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=72983 # 1cby.421.68 read from T0547.t04.many.frag # found chain 1cby in template set Warning: unaligning (T0547)G421 (1cby)D69 because P (beta_P) conformation "forbidden" or filtered. T0547 422 :DKQNPADL 1cby 70 :PLNLNFNF Number of specific fragments extracted= 1 number of extra gaps= 1 total=72984 # 1tfr.421.258 read from T0547.t04.many.frag # found chain 1tfr in template set T0547 421 :GDKQNPADL 1tfr 259 :DFDYIPDNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=72985 # 1knwA.421.382 read from T0547.t04.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P426 (1knwA)S388 because L (left) conformation "forbidden" or filtered. T0547 421 :GDKQN 1knwA 383 :SSNYN T0547 427 :ADL 1knwA 389 :RPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=72987 # 1ah7.421.163 read from T0547.t04.many.frag # found chain 1ah7 in training set Warning: unaligning (T0547)G421 (1ah7)Y164 because N (gamma') conformation "forbidden" or filtered. T0547 422 :DKQNPADL 1ah7 165 :WNWKGTNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=72988 # 1uuhA.421.37 read from T0547.t04.many.frag # found chain 1uuhA in template set Warning: unaligning (T0547)D422 (1uuhA)S58 because Y (epsilon') conformation "forbidden" or filtered. T0547 421 :G 1uuhA 57 :N T0547 423 :KQNPADL 1uuhA 59 :TLPTMAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=72990 # 1pkhA.421.68 read from T0547.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0547)K423 (1pkhA)N71 because L (left) conformation "forbidden" or filtered. T0547 421 :GD 1pkhA 69 :PL T0547 424 :QNPADL 1pkhA 72 :YNLTEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=72992 # 1wgzA.421.380 read from T0547.t04.many.frag # found chain 1wgzA in template set Warning: unaligning (T0547)K423 (1wgzA)G383 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1wgzA)S386 because E (beta_S) conformation "forbidden" or filtered. T0547 421 :GD 1wgzA 381 :FR T0547 424 :QN 1wgzA 384 :EL T0547 427 :ADL 1wgzA 387 :PED Number of specific fragments extracted= 3 number of extra gaps= 2 total=72995 1h21A expands to /projects/compbio/data/pdb/1h21.pdb.gz 1h21A:# 1h21A.421.60 read from T0547.t04.many.frag # adding 1h21A to template set # found chain 1h21A in template set Warning: unaligning (T0547)K423 (1h21A)P63 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1h21A)Q66 because G (3-10) conformation "forbidden" or filtered. T0547 421 :GD 1h21A 61 :GA T0547 424 :QN 1h21A 64 :YN T0547 427 :ADL 1h21A 67 :FPF Number of specific fragments extracted= 3 number of extra gaps= 2 total=72998 # 7odcA.421.393 read from T0547.t04.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Q424 (7odcA)F397 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (7odcA)F400 because P (beta_P) conformation "forbidden" or filtered. T0547 421 :GDK 7odcA 394 :AST T0547 425 :N 7odcA 398 :N T0547 428 :DL 7odcA 401 :QR Number of specific fragments extracted= 3 number of extra gaps= 2 total=73001 # 1wd3A.422.295 read from T0547.t04.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)K423 (1wd3A)G314 because S (epsilon) conformation "forbidden" or filtered. T0547 422 :D 1wd3A 313 :S T0547 424 :QNPADLL 1wd3A 315 :YPSDDTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73003 # 1u7gA.422.275 read from T0547.t04.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)C276 T0547 423 :KQNPADLL 1u7gA 277 :GYIGVGGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=73004 # 1td6A.422.112 read from T0547.t04.many.frag # found chain 1td6A in template set Warning: unaligning (T0547)P426 (1td6A)S105 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1td6A)P107 because P (beta_P) conformation "forbidden" or filtered. T0547 422 :DKQN 1td6A 101 :AALA T0547 427 :A 1td6A 106 :L T0547 429 :LL 1td6A 108 :AA Number of specific fragments extracted= 3 number of extra gaps= 2 total=73007 # 1h54A.422.445 read from T0547.t04.many.frag # found chain 1h54A in template set Warning: unaligning (T0547)P426 (1h54A)L450 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1h54A)H451 because Y (epsilon') conformation "forbidden" or filtered. T0547 422 :DKQN 1h54A 446 :DSYV T0547 428 :DLL 1h54A 452 :EGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=73009 # 1ah7.422.164 read from T0547.t04.many.frag # found chain 1ah7 in training set Warning: unaligning (T0547)K423 (1ah7)N166 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1ah7)N171 because P (beta_P) conformation "forbidden" or filtered. T0547 422 :D 1ah7 165 :W T0547 424 :QNPA 1ah7 167 :WKGT T0547 429 :LL 1ah7 172 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=73012 # 1u61A.422.64 read from T0547.t04.many.frag # found chain 1u61A in template set Warning: unaligning (T0547)K423 (1u61A)A63 because L (left) conformation "forbidden" or filtered. T0547 422 :D 1u61A 62 :T T0547 424 :QNPADLL 1u61A 64 :FLTEEEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73014 # 1pc6A.422.61 read from T0547.t04.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)K423 (1pc6A)H63 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1pc6A)G64 because T (delta_L) conformation "forbidden" or filtered. T0547 422 :D 1pc6A 62 :W T0547 425 :NPADLL 1pc6A 65 :RWLDAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73016 # 1i1wA.422.285 read from T0547.t04.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)Q424 (1i1wA)F288 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1i1wA)N289 because P (beta_P) conformation "forbidden" or filtered. T0547 422 :DK 1i1wA 286 :GN T0547 426 :PADLL 1i1wA 290 :PKPAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=73018 # 1ga6A.422.304 read from T0547.t04.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1ga6A)P311 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1ga6A)P311 T0547 422 :DKQNP 1ga6A 305 :SNSLG T0547 429 :LL 1ga6A 312 :AA Number of specific fragments extracted= 2 number of extra gaps= 1 total=73020 # 2aqjA.422.289 read from T0547.t04.many.frag # found chain 2aqjA in training set T0547 422 :DKQNPADLL 2aqjA 290 :SHFTSRDQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73021 # 1u24A.422.316 read from T0547.t04.many.frag # found chain 1u24A in template set T0547 422 :DKQNPADLL 1u24A 317 :ADGYQTPWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=73022 # 1vmbA.422.28 read from T0547.t04.many.frag # found chain 1vmbA in training set Warning: unaligning (T0547)K423 (1vmbA)N18 because G (3-10) conformation "forbidden" or filtered. T0547 422 :D 1vmbA 17 :P T0547 424 :QNPADLL 1vmbA 19 :VPEEERE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73024 # 1mtyD.422.279 read from T0547.t04.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)A427 (1mtyD)E299 because Y (epsilon') conformation "forbidden" or filtered. T0547 422 :DKQNP 1mtyD 294 :SKFKV T0547 428 :DLL 1mtyD 300 :PWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=73026 # 1ne9A.422.205 read from T0547.t04.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)P426 (1ne9A)H210 because E (beta_S) conformation "forbidden" or filtered. T0547 422 :DKQN 1ne9A 206 :HGIT T0547 427 :ADLL 1ne9A 211 :RPIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73028 # 1svsA.422.163 read from T0547.t04.many.frag # found chain 1svsA in training set T0547 422 :DKQNPADLL 1svsA 165 :PNYIPTQQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73029 # 1q5zA.422.63 read from T0547.t04.many.frag # found chain 1q5zA in training set T0547 422 :DKQNPADLL 1q5zA 556 :DTSTPFPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73030 # 1xrsA.422.374 read from T0547.t04.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)P426 (1xrsA)T379 because E (beta_S) conformation "forbidden" or filtered. T0547 422 :DKQN 1xrsA 375 :TKFM T0547 427 :ADLL 1xrsA 380 :GNIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=73032 # 1x9iA.422.233 read from T0547.t04.many.frag # found chain 1x9iA in training set Warning: unaligning (T0547)D422 (1x9iA)S234 because Y (epsilon') conformation "forbidden" or filtered. T0547 423 :KQNPADLL 1x9iA 235 :PHIPKEHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=73033 # 1yozA.422.51 read from T0547.t04.many.frag # found chain 1yozA in template set Warning: unaligning (T0547)K423 (1yozA)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 422 :D 1yozA 60 :S T0547 424 :QNPADLL 1yozA 62 :KAEKEEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=73035 # 1cby.422.69 read from T0547.t04.many.frag # found chain 1cby in template set Warning: unaligning (T0547)N425 (1cby)L73 because L (left) conformation "forbidden" or filtered. T0547 422 :DKQ 1cby 70 :PLN T0547 426 :PADLL 1cby 74 :NFNFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73037 # 1gakA.422.72 read from T0547.t04.many.frag # found chain 1gakA in template set Warning: unaligning (T0547)A427 (1gakA)V78 because D (zeta) conformation "forbidden" or filtered. T0547 422 :DKQNP 1gakA 73 :LKHLP T0547 428 :DLL 1gakA 79 :NKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=73039 1no1A expands to /projects/compbio/data/pdb/1no1.pdb.gz 1no1A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1no1A.422.18 read from T0547.t04.many.frag # adding 1no1A to template set # found chain 1no1A in template set Warning: unaligning (T0547)D422 (1no1A)G19 because L (left) conformation "forbidden" or filtered. T0547 423 :KQNPADLL 1no1A 20 :RFQPDDLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=73040 # 1ijyA.422.29 read from T0547.t04.many.frag # found chain 1ijyA in training set Warning: unaligning (T0547)D422 (1ijyA)N28 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQNPADLL 1ijyA 29 :QFNHDTQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=73041 1ifqA expands to /projects/compbio/data/pdb/1ifq.pdb.gz 1ifqA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ifqA.422.33 read from T0547.t04.many.frag # adding 1ifqA to template set # found chain 1ifqA in template set T0547 422 :DKQNPADLL 1ifqA 23 :DEQSGRDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73042 # 1k8kD.422.98 read from T0547.t04.many.frag # found chain 1k8kD in template set T0547 422 :DKQNPADLL 1k8kD 99 :LENLPASKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73043 1q8cA expands to /projects/compbio/data/pdb/1q8c.pdb.gz 1q8cA:# 1q8cA.422.28 read from T0547.t04.many.frag # adding 1q8cA to template set # found chain 1q8cA in template set T0547 422 :DKQNPADLL 1q8cA 29 :LFFLPKEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73044 # 1ho8A.422.329 read from T0547.t04.many.frag # found chain 1ho8A in template set Warning: unaligning (T0547)D422 (1ho8A)R328 because Y (epsilon') conformation "forbidden" or filtered. T0547 423 :KQNPADLL 1ho8A 329 :KYSDEELR Number of specific fragments extracted= 1 number of extra gaps= 1 total=73045 # 1nc5A.422.292 read from T0547.t04.many.frag # found chain 1nc5A in training set Warning: unaligning (T0547)K423 (1nc5A)G294 because T (delta_L) conformation "forbidden" or filtered. T0547 422 :D 1nc5A 293 :K T0547 424 :QNPADLL 1nc5A 295 :YLDRAYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73047 # 1ucdA.422.93 read from T0547.t04.many.frag # found chain 1ucdA in training set T0547 422 :DKQNPADLL 1ucdA 94 :STFNQAAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73048 # 1m40A.422.170 read from T0547.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)K423 (1m40A)E197 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0547 422 :D 1m40A 196 :G T0547 424 :QNP 1m40A 198 :LLT T0547 429 :LL 1m40A 203 :SR Number of specific fragments extracted= 3 number of extra gaps= 2 total=73051 # 1ah7.423.165 read from T0547.t04.many.frag # found chain 1ah7 in training set Warning: unaligning (T0547)N425 (1ah7)K168 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1ah7)N171 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQ 1ah7 166 :NW T0547 426 :PA 1ah7 169 :GT T0547 429 :LLA 1ah7 172 :PEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=73054 # 1td6A.423.113 read from T0547.t04.many.frag # found chain 1td6A in template set Warning: unaligning (T0547)P426 (1td6A)S105 because D (zeta) conformation "forbidden" or filtered. T0547 423 :KQN 1td6A 102 :ALA T0547 427 :ADLLA 1td6A 106 :LPAAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=73056 # 1pc6A.423.62 read from T0547.t04.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)K423 (1pc6A)H63 because L (left) conformation "forbidden" or filtered. T0547 424 :QNPADLLA 1pc6A 64 :GRWLDAES Number of specific fragments extracted= 1 number of extra gaps= 1 total=73057 # 1u24A.423.317 read from T0547.t04.many.frag # found chain 1u24A in template set Warning: unaligning (T0547)N425 (1u24A)Y320 because L (left) conformation "forbidden" or filtered. T0547 423 :KQ 1u24A 318 :DG T0547 426 :PADLLA 1u24A 321 :QTPWSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=73059 # 1ga6A.423.305 read from T0547.t04.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)K423 (1ga6A)N306 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1ga6A)L308 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1ga6A)P311 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1ga6A)P311 T0547 424 :Q 1ga6A 307 :S T0547 426 :P 1ga6A 309 :G T0547 429 :LLA 1ga6A 312 :AAS Number of specific fragments extracted= 3 number of extra gaps= 3 total=73062 # 1ne9A.423.206 read from T0547.t04.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)Q424 (1ne9A)I208 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1ne9A)H210 because E (beta_S) conformation "forbidden" or filtered. T0547 423 :K 1ne9A 207 :G T0547 425 :N 1ne9A 209 :T T0547 427 :ADLLA 1ne9A 211 :RPIEY Number of specific fragments extracted= 3 number of extra gaps= 2 total=73065 # 1q8cA.423.29 read from T0547.t04.many.frag # found chain 1q8cA in template set Warning: unaligning (T0547)N425 (1q8cA)L32 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQ 1q8cA 30 :FF T0547 426 :PADLLA 1q8cA 33 :PKEAEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=73067 # 1h54A.423.446 read from T0547.t04.many.frag # found chain 1h54A in template set Warning: unaligning (T0547)P426 (1h54A)L450 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1h54A)H451 because Y (epsilon') conformation "forbidden" or filtered. T0547 423 :KQN 1h54A 447 :SYV T0547 428 :DLLA 1h54A 452 :EGAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=73069 # 1u61A.423.65 read from T0547.t04.many.frag # found chain 1u61A in template set Warning: unaligning (T0547)K423 (1u61A)A63 because L (left) conformation "forbidden" or filtered. T0547 424 :QNPADLLA 1u61A 64 :FLTEEEEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=73070 # 1mtyD.423.280 read from T0547.t04.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)N425 (1mtyD)K297 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1mtyD)E299 because Y (epsilon') conformation "forbidden" or filtered. T0547 423 :KQ 1mtyD 295 :KF T0547 426 :P 1mtyD 298 :V T0547 428 :DLLA 1mtyD 300 :PWVK Number of specific fragments extracted= 3 number of extra gaps= 2 total=73073 # 1qazA.423.268 read from T0547.t04.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)P426 (1qazA)G275 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1qazA)R276 because E (beta_S) conformation "forbidden" or filtered. T0547 423 :KQN 1qazA 272 :KEN T0547 428 :DLLA 1qazA 277 :DIHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=73075 # 1i1wA.423.286 read from T0547.t04.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)Q424 (1i1wA)F288 because L (left) conformation "forbidden" or filtered. T0547 423 :K 1i1wA 287 :N T0547 425 :NPADLLA 1i1wA 289 :NPKPAYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=73077 # 1gakA.423.73 read from T0547.t04.many.frag # found chain 1gakA in template set Warning: unaligning (T0547)A427 (1gakA)V78 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1gakA)N79 because Y (epsilon') conformation "forbidden" or filtered. T0547 423 :KQNP 1gakA 74 :KHLP T0547 429 :LLA 1gakA 80 :KKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=73079 # 1u7gA.423.276 read from T0547.t04.many.frag # found chain 1u7gA in training set T0547 423 :KQNPADLLA 1u7gA 277 :GYIGVGGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73080 # 1wd3A.423.296 read from T0547.t04.many.frag # found chain 1wd3A in training set T0547 423 :KQNPADLLA 1wd3A 314 :GYPSDDTEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73081 # 1njrA.423.195 read from T0547.t04.many.frag # found chain 1njrA in template set Warning: unaligning (T0547)P426 (1njrA)G199 because T (delta_L) conformation "forbidden" or filtered. T0547 423 :KQN 1njrA 196 :GYA T0547 427 :ADLLA 1njrA 200 :VPPII Number of specific fragments extracted= 2 number of extra gaps= 1 total=73083 # 1ho8A.423.330 read from T0547.t04.many.frag # found chain 1ho8A in template set T0547 423 :KQNPADLLA 1ho8A 329 :KYSDEELRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73084 # 1ifqA.423.34 read from T0547.t04.many.frag # found chain 1ifqA in template set Warning: unaligning (T0547)K423 (1ifqA)E24 because L (left) conformation "forbidden" or filtered. T0547 424 :QNPADLLA 1ifqA 25 :QSGRDLQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=73085 # 1ijyA.423.30 read from T0547.t04.many.frag # found chain 1ijyA in training set Warning: unaligning (T0547)D428 (1ijyA)T34 because E (beta_S) conformation "forbidden" or filtered. T0547 423 :KQNPA 1ijyA 29 :QFNHD T0547 429 :LLA 1ijyA 35 :QDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73087 1h9dB expands to /projects/compbio/data/pdb/1h9d.pdb.gz 1h9dB:# 1h9dB.423.29 read from T0547.t04.many.frag # adding 1h9dB to template set # found chain 1h9dB in template set Warning: unaligning (T0547)Q424 (1h9dB)F32 because L (left) conformation "forbidden" or filtered. T0547 423 :K 1h9dB 31 :G T0547 425 :NPADLLA 1h9dB 33 :RDRPHEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73089 # 1vmbA.423.29 read from T0547.t04.many.frag # found chain 1vmbA in training set T0547 423 :KQNPADLLA 1vmbA 18 :NVPEEEREN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73090 # 1xrsA.423.375 read from T0547.t04.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)P426 (1xrsA)T379 because E (beta_S) conformation "forbidden" or filtered. T0547 423 :KQN 1xrsA 376 :KFM T0547 427 :ADLLA 1xrsA 380 :GNIFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=73092 # 1no1A.423.19 read from T0547.t04.many.frag # found chain 1no1A in template set T0547 423 :KQNPADLLA 1no1A 20 :RFQPDDLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73093 # 1k8kD.423.99 read from T0547.t04.many.frag # found chain 1k8kD in template set T0547 423 :KQNPADLLA 1k8kD 100 :ENLPASKDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=73094 # 1t1uA.423.477 read from T0547.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)K423 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1t1uA)H479 Warning: unaligning (T0547)Q424 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1t1uA)K480 Warning: unaligning (T0547)P426 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1t1uA)M483 Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1t1uA)M483 Warning: unaligning (T0547)A431 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t1uA)K488 T0547 425 :N 1t1uA 481 :A T0547 428 :DLL 1t1uA 484 :PAS Number of specific fragments extracted= 2 number of extra gaps= 3 total=73096 # 1wgzA.423.383 read from T0547.t04.many.frag # found chain 1wgzA in template set T0547 423 :KQNPADLLA 1wgzA 384 :ELSPEDLPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73097 # 1q5zA.423.64 read from T0547.t04.many.frag # found chain 1q5zA in training set Warning: unaligning (T0547)N425 (1q5zA)T559 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQ 1q5zA 557 :TS T0547 426 :PADLLA 1q5zA 560 :PFPVRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=73099 # 1zroA.423.259 read from T0547.t04.many.frag # found chain 1zroA in template set Warning: unaligning (T0547)Q424 (1zroA)K261 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1zroA)K265 because N (gamma') conformation "forbidden" or filtered. T0547 423 :K 1zroA 260 :N T0547 425 :NPA 1zroA 262 :NDA T0547 429 :LLA 1zroA 266 :VSL Number of specific fragments extracted= 3 number of extra gaps= 2 total=73102 # 2erbA.423.8 read from T0547.t04.many.frag # found chain 2erbA in training set Warning: unaligning (T0547)N425 (2erbA)P11 because C (cis) conformation "forbidden" or filtered. T0547 423 :KQ 2erbA 9 :EY T0547 426 :PADLLA 2erbA 12 :PPELLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73104 # 1dk0A.423.9 read from T0547.t04.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)P426 (1dk0A)G13 because G (3-10) conformation "forbidden" or filtered. T0547 423 :KQN 1dk0A 10 :SFG T0547 427 :ADLLA 1dk0A 14 :YSIHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=73106 # 1ah7.424.166 read from T0547.t04.many.frag # found chain 1ah7 in training set Warning: unaligning (T0547)N425 (1ah7)K168 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1ah7)T170 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1ah7)N171 because P (beta_P) conformation "forbidden" or filtered. T0547 424 :Q 1ah7 167 :W T0547 426 :P 1ah7 169 :G T0547 429 :LLAI 1ah7 172 :PEEW Number of specific fragments extracted= 3 number of extra gaps= 2 total=73109 # 1td6A.424.114 read from T0547.t04.many.frag # found chain 1td6A in template set Warning: unaligning (T0547)P426 (1td6A)S105 because D (zeta) conformation "forbidden" or filtered. T0547 424 :QN 1td6A 103 :LA T0547 427 :ADLLAI 1td6A 106 :LPAAKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=73111 # 1q8cA.424.30 read from T0547.t04.many.frag # found chain 1q8cA in template set T0547 424 :QNPADLLAI 1q8cA 31 :FLPKEAEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73112 # 1pc6A.424.63 read from T0547.t04.many.frag # found chain 1pc6A in template set T0547 424 :QNPADLLAI 1pc6A 64 :GRWLDAESW Number of specific fragments extracted= 1 number of extra gaps= 0 total=73113 # 1u24A.424.318 read from T0547.t04.many.frag # found chain 1u24A in template set T0547 424 :QNPADLLAI 1u24A 319 :GYQTPWSVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=73114 # 1ga6A.424.306 read from T0547.t04.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1ga6A)P311 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1ga6A)P311 T0547 424 :QNP 1ga6A 307 :SLG T0547 429 :LLAI 1ga6A 312 :AASF Number of specific fragments extracted= 2 number of extra gaps= 1 total=73116 # 1qazA.424.269 read from T0547.t04.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)N425 (1qazA)N274 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1qazA)G275 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1qazA)D277 because Y (epsilon') conformation "forbidden" or filtered. T0547 424 :Q 1qazA 273 :E T0547 427 :A 1qazA 276 :R T0547 429 :LLAI 1qazA 278 :IHSA Number of specific fragments extracted= 3 number of extra gaps= 2 total=73119 # 1gakA.424.74 read from T0547.t04.many.frag # found chain 1gakA in template set Warning: unaligning (T0547)Q424 (1gakA)H75 because L (left) conformation "forbidden" or filtered. T0547 425 :NPADLLAI 1gakA 76 :LPVNKKTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=73120 # 1u61A.424.66 read from T0547.t04.many.frag # found chain 1u61A in template set T0547 424 :QNPADLLAI 1u61A 64 :FLTEEEEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73121 # 1ne9A.424.207 read from T0547.t04.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)P426 (1ne9A)H210 because E (beta_S) conformation "forbidden" or filtered. T0547 424 :QN 1ne9A 208 :IT T0547 427 :ADLLAI 1ne9A 211 :RPIEYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=73123 # 1wgzA.424.384 read from T0547.t04.many.frag # found chain 1wgzA in template set T0547 424 :QNPADLLAI 1wgzA 385 :LSPEDLPEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73124 # 1vctA.424.8 read from T0547.t04.many.frag # found chain 1vctA in template set Warning: unaligning (T0547)Q424 because first residue in template chain is (1vctA)Y9 Warning: unaligning (T0547)N425 (1vctA)E10 because P (beta_P) conformation "forbidden" or filtered. T0547 426 :PADLLAI 1vctA 11 :PKSVKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73125 # 2atzA.424.77 read from T0547.t04.many.frag # found chain 2atzA in template set T0547 424 :QNPADLLAI 2atzA 78 :YNGRNPERF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73126 # 1xrsA.424.376 read from T0547.t04.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)P426 (1xrsA)T379 because E (beta_S) conformation "forbidden" or filtered. T0547 424 :QN 1xrsA 377 :FM T0547 427 :ADLLAI 1xrsA 380 :GNIFKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=73128 # 1k8kD.424.100 read from T0547.t04.many.frag # found chain 1k8kD in template set T0547 424 :QNPADLLAI 1k8kD 101 :NLPASKDSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73129 # 1v54A.424.264 read from T0547.t04.many.frag # found chain 1v54A in training set Warning: unaligning (T0547)N425 (1v54A)E266 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1v54A)G269 because L (left) conformation "forbidden" or filtered. T0547 424 :Q 1v54A 265 :K T0547 426 :PA 1v54A 267 :PF T0547 429 :LLAI 1v54A 270 :YMGM Number of specific fragments extracted= 3 number of extra gaps= 2 total=73132 # 1njrA.424.196 read from T0547.t04.many.frag # found chain 1njrA in template set Warning: unaligning (T0547)P426 (1njrA)G199 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1njrA)V200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1njrA)P201 because P (beta_P) conformation "forbidden" or filtered. T0547 424 :QN 1njrA 197 :YA T0547 429 :LLAI 1njrA 202 :PIIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=73134 # 1mc2A.424.76 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 424 :QNPADLLAI 1mc2A 1087 :KNQPCMQEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=73135 # 1mtyD.424.281 read from T0547.t04.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)N425 (1mtyD)K297 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1mtyD)E299 because Y (epsilon') conformation "forbidden" or filtered. T0547 424 :Q 1mtyD 296 :F T0547 426 :P 1mtyD 298 :V T0547 428 :DLLAI 1mtyD 300 :PWVKT Number of specific fragments extracted= 3 number of extra gaps= 2 total=73138 # 1usgA.424.293 read from T0547.t04.many.frag # found chain 1usgA in training set T0547 424 :QNPADLLAI 1usgA 294 :TGSDEPLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73139 # 1no1A.424.20 read from T0547.t04.many.frag # found chain 1no1A in template set T0547 424 :QNPADLLAI 1no1A 21 :FQPDDLKGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73140 # 1nd4A.424.161 read from T0547.t04.many.frag # found chain 1nd4A in template set Warning: unaligning (T0547)P426 (1nd4A)G164 because T (delta_L) conformation "forbidden" or filtered. T0547 424 :QN 1nd4A 162 :HQ T0547 427 :ADLLAI 1nd4A 165 :LAPAEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=73142 # 1a6i.424.68 read from T0547.t04.many.frag # found chain 1a6i in template set Warning: unaligning (T0547)N425 (1a6i)A71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1a6i)G72 because L (left) conformation "forbidden" or filtered. T0547 424 :Q 1a6i 70 :A T0547 427 :ADLLAI 1a6i 73 :ESWQSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=73144 # 1ks9A.424.218 read from T0547.t04.many.frag # found chain 1ks9A in training set Warning: unaligning (T0547)D428 (1ks9A)S223 because E (beta_S) conformation "forbidden" or filtered. T0547 424 :QNPA 1ks9A 219 :GHHT T0547 429 :LLAI 1ks9A 224 :AEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=73146 # 1nu7D.424.180 read from T0547.t04.many.frag # found chain 1nu7D in template set T0547 424 :QNPADLLAI 1nu7D 180 :QHKTEALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73147 # 1ifqA.424.35 read from T0547.t04.many.frag # found chain 1ifqA in template set T0547 424 :QNPADLLAI 1ifqA 25 :QSGRDLQQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73148 # 2ex0A.424.350 read from T0547.t04.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)P426 (2ex0A)V377 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (2ex0A)S379 because Y (epsilon') conformation "forbidden" or filtered. T0547 424 :QN 2ex0A 375 :KQ T0547 427 :A 2ex0A 378 :K T0547 429 :LLAI 2ex0A 380 :KEDA Number of specific fragments extracted= 3 number of extra gaps= 2 total=73151 # 1bjt.424.432 read from T0547.t04.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)A427 (1bjt)F844 because E (beta_S) conformation "forbidden" or filtered. T0547 424 :QNP 1bjt 841 :IPP T0547 428 :DLLAI 1bjt 845 :NPLEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=73153 # 1qlmA.424.259 read from T0547.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)P426 (1qlmA)G262 because T (delta_L) conformation "forbidden" or filtered. T0547 424 :QN 1qlmA 260 :DY T0547 427 :ADLLAI 1qlmA 263 :KPFMKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=73155 # 1uocA.424.177 read from T0547.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)D428 (1uocA)N182 because Y (epsilon') conformation "forbidden" or filtered. T0547 424 :QNPA 1uocA 178 :SMPN T0547 429 :LLAI 1uocA 183 :KEDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=73157 # 1ah7.425.167 read from T0547.t04.many.frag # found chain 1ah7 in training set Warning: unaligning (T0547)N425 (1ah7)K168 because Y (epsilon') conformation "forbidden" or filtered. T0547 426 :PADLLAIQ 1ah7 169 :GTNPEEWI Number of specific fragments extracted= 1 number of extra gaps= 1 total=73158 # 1td6A.425.115 read from T0547.t04.many.frag # found chain 1td6A in template set Warning: unaligning (T0547)P426 (1td6A)S105 because D (zeta) conformation "forbidden" or filtered. T0547 425 :N 1td6A 104 :A T0547 427 :ADLLAIQ 1td6A 106 :LPAAKII Number of specific fragments extracted= 2 number of extra gaps= 1 total=73160 # 1q8cA.425.31 read from T0547.t04.many.frag # found chain 1q8cA in template set T0547 425 :NPADLLAIQ 1q8cA 32 :LPKEAEVIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73161 # 1pc6A.425.64 read from T0547.t04.many.frag # found chain 1pc6A in template set T0547 425 :NPADLLAIQ 1pc6A 65 :RWLDAESWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73162 # 1usgA.425.294 read from T0547.t04.many.frag # found chain 1usgA in training set Warning: unaligning (T0547)N425 (1usgA)G295 because T (delta_L) conformation "forbidden" or filtered. T0547 426 :PADLLAIQ 1usgA 296 :SDEPLALV Number of specific fragments extracted= 1 number of extra gaps= 1 total=73163 # 1gakA.425.75 read from T0547.t04.many.frag # found chain 1gakA in template set Warning: unaligning (T0547)A427 (1gakA)V78 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1gakA)N79 because Y (epsilon') conformation "forbidden" or filtered. T0547 425 :NP 1gakA 76 :LP T0547 429 :LLAIQ 1gakA 80 :KKTLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=73165 # 1vctA.425.9 read from T0547.t04.many.frag # found chain 1vctA in template set T0547 425 :NPADLLAIQ 1vctA 10 :EPKSVKEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73166 # 1u24A.425.319 read from T0547.t04.many.frag # found chain 1u24A in template set Warning: unaligning (T0547)N425 (1u24A)Y320 because L (left) conformation "forbidden" or filtered. T0547 426 :PADLLAIQ 1u24A 321 :QTPWSVWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=73167 # 1v54A.425.265 read from T0547.t04.many.frag # found chain 1v54A in training set Warning: unaligning (T0547)N425 (1v54A)E266 because Y (epsilon') conformation "forbidden" or filtered. T0547 426 :PADLLAIQ 1v54A 267 :PFGYMGMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=73168 # 2atzA.425.78 read from T0547.t04.many.frag # found chain 2atzA in template set T0547 425 :NPADLLAIQ 2atzA 79 :NGRNPERFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73169 # 1mc2A.425.77 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 425 :NPADLLAIQ 1mc2A 1088 :NQPCMQEMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=73170 # 1qazA.425.270 read from T0547.t04.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)P426 (1qazA)G275 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1qazA)R276 because E (beta_S) conformation "forbidden" or filtered. T0547 425 :N 1qazA 274 :N T0547 428 :DLLAIQ 1qazA 277 :DIHSAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=73172 # 1wgzA.425.385 read from T0547.t04.many.frag # found chain 1wgzA in template set Warning: unaligning (T0547)N425 (1wgzA)S386 because E (beta_S) conformation "forbidden" or filtered. T0547 426 :PADLLAIQ 1wgzA 387 :PEDLPEAW Number of specific fragments extracted= 1 number of extra gaps= 1 total=73173 2es9A expands to /projects/compbio/data/pdb/2es9.pdb.gz 2es9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2es9A.425.49 read from T0547.t04.many.frag # adding 2es9A to template set # found chain 2es9A in template set Warning: unaligning (T0547)D428 (2es9A)S53 because P (beta_P) conformation "forbidden" or filtered. T0547 425 :NPA 2es9A 50 :VPV T0547 429 :LLAIQ 2es9A 54 :PEVVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=73175 # 1nd4A.425.162 read from T0547.t04.many.frag # found chain 1nd4A in template set Warning: unaligning (T0547)P426 (1nd4A)G164 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1nd4A)A166 because P (beta_P) conformation "forbidden" or filtered. T0547 425 :N 1nd4A 163 :Q T0547 427 :A 1nd4A 165 :L T0547 429 :LLAIQ 1nd4A 167 :PAELF Number of specific fragments extracted= 3 number of extra gaps= 2 total=73178 # 1bjt.425.433 read from T0547.t04.many.frag # found chain 1bjt in template set T0547 425 :NPADLLAIQ 1bjt 842 :PPFNPLEII Number of specific fragments extracted= 1 number of extra gaps= 0 total=73179 # 1ga6A.425.307 read from T0547.t04.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1ga6A)P311 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1ga6A)P311 T0547 425 :NP 1ga6A 308 :LG T0547 429 :LLAIQ 1ga6A 312 :AASFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=73181 # 1k8kD.425.101 read from T0547.t04.many.frag # found chain 1k8kD in template set T0547 425 :NPADLLAIQ 1k8kD 102 :LPASKDSIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73182 # 1ks9A.425.219 read from T0547.t04.many.frag # found chain 1ks9A in training set Warning: unaligning (T0547)A427 (1ks9A)T222 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1ks9A)S223 because E (beta_S) conformation "forbidden" or filtered. T0547 425 :NP 1ks9A 220 :HH T0547 429 :LLAIQ 1ks9A 224 :AEDLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=73184 # 1ne9A.425.208 read from T0547.t04.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)N425 (1ne9A)T209 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1ne9A)H210 because E (beta_S) conformation "forbidden" or filtered. T0547 427 :ADLLAIQ 1ne9A 211 :RPIEYFQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=73185 # 1ub0A.425.221 read from T0547.t04.many.frag # found chain 1ub0A in template set Warning: unaligning (T0547)P426 (1ub0A)G223 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1ub0A)P225 because P (beta_P) conformation "forbidden" or filtered. T0547 425 :N 1ub0A 222 :K T0547 427 :A 1ub0A 224 :R T0547 429 :LLAIQ 1ub0A 226 :LAEAV Number of specific fragments extracted= 3 number of extra gaps= 2 total=73188 # 1u61A.425.67 read from T0547.t04.many.frag # found chain 1u61A in template set T0547 425 :NPADLLAIQ 1u61A 65 :LTEEEEAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73189 # 1njrA.425.197 read from T0547.t04.many.frag # found chain 1njrA in template set Warning: unaligning (T0547)P426 (1njrA)G199 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1njrA)V200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1njrA)P201 because P (beta_P) conformation "forbidden" or filtered. T0547 425 :N 1njrA 198 :A T0547 429 :LLAIQ 1njrA 202 :PIISC Number of specific fragments extracted= 2 number of extra gaps= 1 total=73191 # 1a6i.425.69 read from T0547.t04.many.frag # found chain 1a6i in template set Warning: unaligning (T0547)P426 (1a6i)G72 because L (left) conformation "forbidden" or filtered. T0547 425 :N 1a6i 71 :A T0547 427 :ADLLAIQ 1a6i 73 :ESWQSFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=73193 # 1xrsA.425.377 read from T0547.t04.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)P426 (1xrsA)T379 because E (beta_S) conformation "forbidden" or filtered. T0547 425 :N 1xrsA 378 :M T0547 427 :ADLLAIQ 1xrsA 380 :GNIFKGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=73195 # 1sr9A.425.472 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)P426 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1sr9A)E474 Warning: unaligning (T0547)D428 (1sr9A)S476 because P (beta_P) conformation "forbidden" or filtered. T0547 427 :A 1sr9A 475 :V T0547 429 :LLAIQ 1sr9A 477 :PKEMW Number of specific fragments extracted= 2 number of extra gaps= 1 total=73197 # 2anuA.425.129 read from T0547.t04.many.frag # found chain 2anuA in template set T0547 425 :NPADLLAIQ 2anuA 118 :PSLPVEEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73198 # 1qlmA.425.260 read from T0547.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)P426 (1qlmA)G262 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1qlmA)P264 because P (beta_P) conformation "forbidden" or filtered. T0547 425 :N 1qlmA 261 :Y T0547 427 :A 1qlmA 263 :K T0547 429 :LLAIQ 1qlmA 265 :FMKIF Number of specific fragments extracted= 3 number of extra gaps= 2 total=73201 # 1lfb.425.34 read from T0547.t04.many.frag # found chain 1lfb in template set T0547 425 :NPADLLAIQ 1lfb 35 :SKEERETLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73202 # 1twfB.425.546 read from T0547.t04.many.frag # found chain 1twfB in template set T0547 425 :NPADLLAIQ 1twfB 547 :VGTDPMPII Number of specific fragments extracted= 1 number of extra gaps= 0 total=73203 # 1ah7.426.168 read from T0547.t04.many.frag # found chain 1ah7 in training set T0547 426 :PADLLAIQD 1ah7 169 :GTNPEEWIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=73204 # 1td6A.426.116 read from T0547.t04.many.frag # found chain 1td6A in template set Warning: unaligning (T0547)P426 (1td6A)S105 because D (zeta) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 1td6A 106 :LPAAKIIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=73205 # 1q8cA.426.32 read from T0547.t04.many.frag # found chain 1q8cA in template set T0547 426 :PADLLAIQD 1q8cA 33 :PKEAEVIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73206 # 1usgA.426.295 read from T0547.t04.many.frag # found chain 1usgA in training set T0547 426 :PADLLAIQD 1usgA 296 :SDEPLALVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73207 # 1v54A.426.266 read from T0547.t04.many.frag # found chain 1v54A in training set Warning: unaligning (T0547)D428 (1v54A)G269 because L (left) conformation "forbidden" or filtered. T0547 426 :PA 1v54A 267 :PF T0547 429 :LLAIQD 1v54A 270 :YMGMVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=73209 # 1gakA.426.76 read from T0547.t04.many.frag # found chain 1gakA in template set Warning: unaligning (T0547)A427 (1gakA)V78 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1gakA)N79 because Y (epsilon') conformation "forbidden" or filtered. T0547 426 :P 1gakA 77 :P T0547 429 :LLAIQD 1gakA 80 :KKTLTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=73211 # 1vctA.426.10 read from T0547.t04.many.frag # found chain 1vctA in template set T0547 426 :PADLLAIQD 1vctA 11 :PKSVKEIFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73212 # 1pc6A.426.65 read from T0547.t04.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)A427 (1pc6A)L67 because E (beta_S) conformation "forbidden" or filtered. T0547 426 :P 1pc6A 66 :W T0547 428 :DLLAIQD 1pc6A 68 :DAESWKC Number of specific fragments extracted= 2 number of extra gaps= 1 total=73214 # 1twfB.426.547 read from T0547.t04.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)P426 (1twfB)G548 because S (epsilon) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 1twfB 549 :TDPMPIIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=73215 # 2atzA.426.79 read from T0547.t04.many.frag # found chain 2atzA in template set T0547 426 :PADLLAIQD 2atzA 80 :GRNPERFYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=73216 # 1bjt.426.434 read from T0547.t04.many.frag # found chain 1bjt in template set T0547 426 :PADLLAIQD 1bjt 843 :PFNPLEIIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73217 # 2anuA.426.130 read from T0547.t04.many.frag # found chain 2anuA in template set T0547 426 :PADLLAIQD 2anuA 119 :SLPVEEIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73218 # 2es9A.426.50 read from T0547.t04.many.frag # found chain 2es9A in template set T0547 426 :PADLLAIQD 2es9A 51 :PVSPEVVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73219 # 1ks9A.426.220 read from T0547.t04.many.frag # found chain 1ks9A in training set Warning: unaligning (T0547)A427 (1ks9A)T222 because Y (epsilon') conformation "forbidden" or filtered. T0547 426 :P 1ks9A 221 :H T0547 428 :DLLAIQD 1ks9A 223 :SAEDLRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=73221 # 1sr9A.426.473 read from T0547.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)P426 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1sr9A)E474 Warning: unaligning (T0547)D428 (1sr9A)S476 because P (beta_P) conformation "forbidden" or filtered. T0547 427 :A 1sr9A 475 :V T0547 429 :LLAIQD 1sr9A 477 :PKEMWD Number of specific fragments extracted= 2 number of extra gaps= 1 total=73223 # 1u24A.426.320 read from T0547.t04.many.frag # found chain 1u24A in template set Warning: unaligning (T0547)D428 (1u24A)P323 because P (beta_P) conformation "forbidden" or filtered. T0547 426 :PA 1u24A 321 :QT T0547 429 :LLAIQD 1u24A 324 :WSVWLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=73225 # 1t95A.426.124 read from T0547.t04.many.frag # found chain 1t95A in template set T0547 426 :PADLLAIQD 1t95A 125 :PHPPSRIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=73226 # 1xg8A.426.24 read from T0547.t04.many.frag # found chain 1xg8A in template set T0547 426 :PADLLAIQD 1xg8A 16 :APTSKDIYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73227 # 1mc2A.426.78 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 426 :PADLLAIQD 1mc2A 1089 :QPCMQEMCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73228 # 1wgzA.426.386 read from T0547.t04.many.frag # found chain 1wgzA in template set T0547 426 :PADLLAIQD 1wgzA 387 :PEDLPEAWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73229 # 1h32A.426.151 read from T0547.t04.many.frag # found chain 1h32A in training set Warning: unaligning (T0547)P426 (1h32A)D152 because Y (epsilon') conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 1h32A 153 :GPAQSTWE Number of specific fragments extracted= 1 number of extra gaps= 1 total=73230 # 1nd4A.426.163 read from T0547.t04.many.frag # found chain 1nd4A in template set Warning: unaligning (T0547)P426 (1nd4A)G164 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1nd4A)L165 because P (beta_P) conformation "forbidden" or filtered. T0547 428 :DLLAIQD 1nd4A 166 :APAELFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=73231 # 1lfb.426.35 read from T0547.t04.many.frag # found chain 1lfb in template set T0547 426 :PADLLAIQD 1lfb 36 :KEERETLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73232 # 1ursA.426.155 read from T0547.t04.many.frag # found chain 1ursA in training set T0547 426 :PADLLAIQD 1ursA 156 :PQTWAEFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73233 # 1ub0A.426.222 read from T0547.t04.many.frag # found chain 1ub0A in template set Warning: unaligning (T0547)P426 (1ub0A)G223 because T (delta_L) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 1ub0A 224 :RPLAEAVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=73234 # 1ne9A.426.209 read from T0547.t04.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)P426 (1ne9A)H210 because E (beta_S) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 1ne9A 211 :RPIEYFQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=73235 # 1f9yA.426.62 read from T0547.t04.many.frag # found chain 1f9yA in training set Warning: unaligning (T0547)P426 (1f9yA)S63 because G (3-10) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 1f9yA 64 :LAPEELLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=73236 # 2cz1A.426.179 read from T0547.t04.many.frag # found chain 2cz1A in training set Warning: unaligning (T0547)P426 (2cz1A)G180 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (2cz1A)S182 because P (beta_P) conformation "forbidden" or filtered. T0547 427 :A 2cz1A 181 :W T0547 429 :LLAIQD 2cz1A 183 :QEQLQE Number of specific fragments extracted= 2 number of extra gaps= 2 total=73238 # 1m22A.426.344 read from T0547.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)P426 (1m22A)L382 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1m22A)S384 because Y (epsilon') conformation "forbidden" or filtered. T0547 427 :A 1m22A 383 :R T0547 429 :LLAIQD 1m22A 385 :LADLIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=73240 # 1rz4A.426.95 read from T0547.t04.many.frag # found chain 1rz4A in template set Warning: unaligning (T0547)D428 (1rz4A)P98 because C (cis) conformation "forbidden" or filtered. T0547 426 :PA 1rz4A 96 :ER T0547 429 :LLAIQD 1rz4A 99 :IRQILY Number of specific fragments extracted= 2 number of extra gaps= 1 total=73242 # 1v54A.427.267 read from T0547.t04.many.frag # found chain 1v54A in training set Warning: unaligning (T0547)D428 (1v54A)G269 because L (left) conformation "forbidden" or filtered. T0547 427 :A 1v54A 268 :F T0547 429 :LLAIQDE 1v54A 270 :YMGMVWA Number of specific fragments extracted= 2 number of extra gaps= 1 total=73244 # 1q8cA.427.33 read from T0547.t04.many.frag # found chain 1q8cA in template set T0547 427 :ADLLAIQDE 1q8cA 34 :KEAEVIQAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73245 # 1usgA.427.296 read from T0547.t04.many.frag # found chain 1usgA in training set Warning: unaligning (T0547)A427 (1usgA)D297 because G (3-10) conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 1usgA 298 :EPLALVKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=73246 # 1lfb.427.36 read from T0547.t04.many.frag # found chain 1lfb in template set T0547 427 :ADLLAIQDE 1lfb 37 :EERETLVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73247 # 1ks9A.427.221 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 427 :ADLLAIQDE 1ks9A 222 :TSAEDLRDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73248 # 1sr9A.427.474 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 427 :ADLLAIQDE 1sr9A 475 :VSPKEMWDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73249 # 2atzA.427.80 read from T0547.t04.many.frag # found chain 2atzA in template set Warning: unaligning (T0547)D428 (2atzA)N82 because D (zeta) conformation "forbidden" or filtered. T0547 427 :A 2atzA 81 :R T0547 429 :LLAIQDE 2atzA 83 :PERFYHK Number of specific fragments extracted= 2 number of extra gaps= 1 total=73251 # 1vctA.427.11 read from T0547.t04.many.frag # found chain 1vctA in template set T0547 427 :ADLLAIQDE 1vctA 12 :KSVKEIFIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73252 # 1gakA.427.77 read from T0547.t04.many.frag # found chain 1gakA in template set Warning: unaligning (T0547)D428 (1gakA)N79 because Y (epsilon') conformation "forbidden" or filtered. T0547 427 :A 1gakA 78 :V T0547 429 :LLAIQDE 1gakA 80 :KKTLTKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=73254 # 1td6A.427.117 read from T0547.t04.many.frag # found chain 1td6A in template set T0547 427 :ADLLAIQDE 1td6A 106 :LPAAKIIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73255 # 1h32A.427.152 read from T0547.t04.many.frag # found chain 1h32A in training set Warning: unaligning (T0547)A427 (1h32A)G153 because S (epsilon) conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 1h32A 154 :PAQSTWEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=73256 # 1xg8A.427.25 read from T0547.t04.many.frag # found chain 1xg8A in template set T0547 427 :ADLLAIQDE 1xg8A 17 :PTSKDIYDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=73257 # 1pc6A.427.66 read from T0547.t04.many.frag # found chain 1pc6A in template set T0547 427 :ADLLAIQDE 1pc6A 67 :LDAESWKCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73258 1f5qB expands to /projects/compbio/data/pdb/1f5q.pdb.gz 1f5qB:Skipped atom 2781, because occupancy 0.500 <= existing 0.500 in 1f5qB Skipped atom 2783, because occupancy 0.500 <= existing 0.500 in 1f5qB Skipped atom 2785, because occupancy 0.500 <= existing 0.500 in 1f5qB Skipped atom 2787, because occupancy 0.500 <= existing 0.500 in 1f5qB Skipped atom 2789, because occupancy 0.500 <= existing 0.500 in 1f5qB Skipped atom 2791, because occupancy 0.500 <= existing 0.500 in 1f5qB # 1f5qB.427.164 read from T0547.t04.many.frag # adding 1f5qB to template set # found chain 1f5qB in template set T0547 427 :ADLLAIQDE 1f5qB 165 :EDYLNIYNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73259 # 2es9A.427.51 read from T0547.t04.many.frag # found chain 2es9A in template set T0547 427 :ADLLAIQDE 2es9A 52 :VSPEVVVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73260 # 1ah7.427.169 read from T0547.t04.many.frag # found chain 1ah7 in training set Warning: unaligning (T0547)D428 (1ah7)N171 because P (beta_P) conformation "forbidden" or filtered. T0547 427 :A 1ah7 170 :T T0547 429 :LLAIQDE 1ah7 172 :PEEWIHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=73262 # 1nd4A.427.164 read from T0547.t04.many.frag # found chain 1nd4A in template set Warning: unaligning (T0547)A427 (1nd4A)L165 because P (beta_P) conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 1nd4A 166 :APAELFAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=73263 # 2anuA.427.131 read from T0547.t04.many.frag # found chain 2anuA in template set T0547 427 :ADLLAIQDE 2anuA 120 :LPVEEIVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73264 # 1twfB.427.548 read from T0547.t04.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)A427 (1twfB)T549 because E (beta_S) conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 1twfB 550 :DPMPIITF Number of specific fragments extracted= 1 number of extra gaps= 1 total=73265 # 1vqoX.427.24 read from T0547.t04.many.frag # found chain 1vqoX in template set T0547 427 :ADLLAIQDE 1vqoX 24 :KRADKAMIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73266 # 1bjt.427.435 read from T0547.t04.many.frag # found chain 1bjt in template set T0547 427 :ADLLAIQDE 1bjt 844 :FNPLEIIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73267 # 1mc2A.427.79 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 427 :ADLLAIQDE 1mc2A 1090 :PCMQEMCEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=73268 # 1tuoA.427.363 read from T0547.t04.many.frag # found chain 1tuoA in training set T0547 427 :ADLLAIQDE 1tuoA 364 :KDLAEQFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73269 # 1rz4A.427.96 read from T0547.t04.many.frag # found chain 1rz4A in template set Warning: unaligning (T0547)D428 (1rz4A)P98 because C (cis) conformation "forbidden" or filtered. T0547 427 :A 1rz4A 97 :R T0547 429 :LLAIQDE 1rz4A 99 :IRQILYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=73271 # 1zx5A.427.58 read from T0547.t04.many.frag # found chain 1zx5A in template set Warning: unaligning (T0547)A427 (1zx5A)L58 because Y (epsilon') conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 1zx5A 59 :SMIELFSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=73272 # 1nu7D.427.183 read from T0547.t04.many.frag # found chain 1nu7D in template set T0547 427 :ADLLAIQDE 1nu7D 183 :TEALELKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73273 # 1nd4A.427.134 read from T0547.t04.many.frag # found chain 1nd4A in template set T0547 427 :ADLLAIQDE 1nd4A 135 :HQAKHRIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=73274 # 1ra6A.427.337 read from T0547.t04.many.frag # found chain 1ra6A in template set Warning: unaligning (T0547)A427 (1ra6A)V338 because E (beta_S) conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 1ra6A 339 :DASLLAQS Number of specific fragments extracted= 1 number of extra gaps= 1 total=73275 # 2cz1A.427.180 read from T0547.t04.many.frag # found chain 2cz1A in training set Warning: unaligning (T0547)D428 (2cz1A)S182 because P (beta_P) conformation "forbidden" or filtered. T0547 427 :A 2cz1A 181 :W T0547 429 :LLAIQDE 2cz1A 183 :QEQLQEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=73277 # 1p7tA.427.512 read from T0547.t04.many.frag # found chain 1p7tA in template set T0547 427 :ADLLAIQDE 1p7tA 513 :DLMADMYSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73278 # 1v54A.428.268 read from T0547.t04.many.frag # found chain 1v54A in training set T0547 428 :DLLAIQDEV 1v54A 269 :GYMGMVWAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=73279 # 1lfb.428.37 read from T0547.t04.many.frag # found chain 1lfb in template set T0547 428 :DLLAIQDEV 1lfb 38 :ERETLVEEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=73280 # 1usgA.428.297 read from T0547.t04.many.frag # found chain 1usgA in training set T0547 428 :DLLAIQDEV 1usgA 298 :EPLALVKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73281 # 1vctA.428.12 read from T0547.t04.many.frag # found chain 1vctA in template set Warning: unaligning (T0547)D428 (1vctA)S13 because P (beta_P) conformation "forbidden" or filtered. T0547 429 :LLAIQDEV 1vctA 14 :VKEIFIEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=73282 # 1f5qB.428.165 read from T0547.t04.many.frag # found chain 1f5qB in template set T0547 428 :DLLAIQDEV 1f5qB 166 :DYLNIYNLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=73283 # 1xg8A.428.26 read from T0547.t04.many.frag # found chain 1xg8A in template set T0547 428 :DLLAIQDEV 1xg8A 18 :TSKDIYDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73284 # 1h32A.428.153 read from T0547.t04.many.frag # found chain 1h32A in training set T0547 428 :DLLAIQDEV 1h32A 154 :PAQSTWEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73285 # 1ks9A.428.222 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 428 :DLLAIQDEV 1ks9A 223 :SAEDLRDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73286 # 1q8cA.428.34 read from T0547.t04.many.frag # found chain 1q8cA in template set T0547 428 :DLLAIQDEV 1q8cA 35 :EAEVIQADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73287 # 1sr9A.428.475 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 428 :DLLAIQDEV 1sr9A 476 :SPKEMWDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73288 # 1zx5A.428.59 read from T0547.t04.many.frag # found chain 1zx5A in template set T0547 428 :DLLAIQDEV 1zx5A 59 :SMIELFSKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=73289 # 2atzA.428.81 read from T0547.t04.many.frag # found chain 2atzA in template set Warning: unaligning (T0547)D428 (2atzA)N82 because D (zeta) conformation "forbidden" or filtered. T0547 429 :LLAIQDEV 2atzA 83 :PERFYHKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=73290 # 1mc2A.428.80 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 428 :DLLAIQDEV 1mc2A 1091 :CMQEMCECD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73291 # 1nd4A.428.165 read from T0547.t04.many.frag # found chain 1nd4A in template set T0547 428 :DLLAIQDEV 1nd4A 166 :APAELFARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73292 # 2anuA.428.132 read from T0547.t04.many.frag # found chain 2anuA in template set T0547 428 :DLLAIQDEV 2anuA 121 :PVEEIVEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73293 # 1vqoX.428.25 read from T0547.t04.many.frag # found chain 1vqoX in template set T0547 428 :DLLAIQDEV 1vqoX 25 :RADKAMILI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73294 # 1tuoA.428.364 read from T0547.t04.many.frag # found chain 1tuoA in training set T0547 428 :DLLAIQDEV 1tuoA 365 :DLAEQFKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73295 # 1p7tA.428.513 read from T0547.t04.many.frag # found chain 1p7tA in template set Warning: unaligning (T0547)D428 (1p7tA)L514 because N (gamma') conformation "forbidden" or filtered. T0547 429 :LLAIQDEV 1p7tA 515 :MADMYSQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=73296 # 1nd4A.428.135 read from T0547.t04.many.frag # found chain 1nd4A in template set T0547 428 :DLLAIQDEV 1nd4A 136 :QAKHRIERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73297 # 2es9A.428.52 read from T0547.t04.many.frag # found chain 2es9A in template set T0547 428 :DLLAIQDEV 2es9A 53 :SPEVVVARG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73298 # 1nu7D.428.184 read from T0547.t04.many.frag # found chain 1nu7D in template set T0547 428 :DLLAIQDEV 1nu7D 184 :EALELKAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73299 # 1q2lA.428.688 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 428 :DLLAIQDEV 1q2lA 712 :QATTLARDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73300 # 1na3A.428.7 read from T0547.t04.many.frag # found chain 1na3A in training set T0547 428 :DLLAIQDEV 1na3A 3 :SAEAWYNLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73301 # 1bjt.428.436 read from T0547.t04.many.frag # found chain 1bjt in template set T0547 428 :DLLAIQDEV 1bjt 845 :NPLEIIKNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73302 # 1rz4A.428.97 read from T0547.t04.many.frag # found chain 1rz4A in template set Warning: unaligning (T0547)D428 (1rz4A)P98 because C (cis) conformation "forbidden" or filtered. T0547 429 :LLAIQDEV 1rz4A 99 :IRQILYLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=73303 # 1ra6A.428.338 read from T0547.t04.many.frag # found chain 1ra6A in template set T0547 428 :DLLAIQDEV 1ra6A 339 :DASLLAQSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73304 # 1gakA.428.78 read from T0547.t04.many.frag # found chain 1gakA in template set T0547 428 :DLLAIQDEV 1gakA 79 :NKKTLTKMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73305 # 1vmbA.428.34 read from T0547.t04.many.frag # found chain 1vmbA in training set T0547 428 :DLLAIQDEV 1vmbA 23 :ERENLVERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73306 # 1yge.428.721 read from T0547.t04.many.frag # found chain 1yge in training set T0547 428 :DLLAIQDEV 1yge 722 :EYEEMINNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=73307 # 1szwA.428.164 read from T0547.t04.many.frag # found chain 1szwA in template set T0547 428 :DLLAIQDEV 1szwA 143 :DVEQRLIDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73308 # 1lfb.429.38 read from T0547.t04.many.frag # found chain 1lfb in template set T0547 429 :LLAIQDEVQ 1lfb 39 :RETLVEECN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73309 # 1v54A.429.269 read from T0547.t04.many.frag # found chain 1v54A in training set T0547 429 :LLAIQDEVQ 1v54A 270 :YMGMVWAMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=73310 # 1usgA.429.298 read from T0547.t04.many.frag # found chain 1usgA in training set T0547 429 :LLAIQDEVQ 1usgA 299 :PLALVKDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73311 # 1f5qB.429.166 read from T0547.t04.many.frag # found chain 1f5qB in template set T0547 429 :LLAIQDEVQ 1f5qB 167 :YLNIYNLCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73312 # 1xg8A.429.27 read from T0547.t04.many.frag # found chain 1xg8A in template set T0547 429 :LLAIQDEVQ 1xg8A 19 :SKDIYDWLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73313 # 1mc2A.429.81 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 429 :LLAIQDEVQ 1mc2A 1092 :MQEMCECDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73314 # 1h32A.429.154 read from T0547.t04.many.frag # found chain 1h32A in training set T0547 429 :LLAIQDEVQ 1h32A 155 :AQSTWEKGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73315 # 1zx5A.429.60 read from T0547.t04.many.frag # found chain 1zx5A in template set T0547 429 :LLAIQDEVQ 1zx5A 60 :MIELFSKHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73316 # 1vctA.429.13 read from T0547.t04.many.frag # found chain 1vctA in template set T0547 429 :LLAIQDEVQ 1vctA 14 :VKEIFIEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73317 # 1ks9A.429.223 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 429 :LLAIQDEVQ 1ks9A 224 :AEDLRDYVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=73318 # 1wgzA.429.390 read from T0547.t04.many.frag # found chain 1wgzA in template set T0547 429 :LLAIQDEVQ 1wgzA 391 :PEAWAEKYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73319 # 1sr9A.429.476 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 429 :LLAIQDEVQ 1sr9A 477 :PKEMWDAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73320 # 1vqoX.429.26 read from T0547.t04.many.frag # found chain 1vqoX in template set T0547 429 :LLAIQDEVQ 1vqoX 26 :ADKAMILIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73321 # 1q2lA.429.689 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 429 :LLAIQDEVQ 1q2lA 713 :ATTLARDVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73322 # 1na3A.429.8 read from T0547.t04.many.frag # found chain 1na3A in training set T0547 429 :LLAIQDEVQ 1na3A 4 :AEAWYNLGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73323 # 1nd4A.429.136 read from T0547.t04.many.frag # found chain 1nd4A in template set T0547 429 :LLAIQDEVQ 1nd4A 137 :AKHRIERAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73324 # 1p7tA.429.514 read from T0547.t04.many.frag # found chain 1p7tA in template set T0547 429 :LLAIQDEVQ 1p7tA 515 :MADMYSQKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73325 # 2atzA.429.82 read from T0547.t04.many.frag # found chain 2atzA in template set T0547 429 :LLAIQDEVQ 2atzA 83 :PERFYHKAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73326 # 2es9A.429.53 read from T0547.t04.many.frag # found chain 2es9A in template set T0547 429 :LLAIQDEVQ 2es9A 54 :PEVVVARGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73327 # 1nu7D.429.185 read from T0547.t04.many.frag # found chain 1nu7D in template set T0547 429 :LLAIQDEVQ 1nu7D 185 :ALELKAKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73328 # 1yge.429.722 read from T0547.t04.many.frag # found chain 1yge in training set T0547 429 :LLAIQDEVQ 1yge 723 :YEEMINNHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73329 # 1nd4A.429.166 read from T0547.t04.many.frag # found chain 1nd4A in template set T0547 429 :LLAIQDEVQ 1nd4A 167 :PAELFARLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73330 # 1q8cA.429.35 read from T0547.t04.many.frag # found chain 1q8cA in template set T0547 429 :LLAIQDEVQ 1q8cA 36 :AEVIQADFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73331 # 1tuoA.429.365 read from T0547.t04.many.frag # found chain 1tuoA in training set T0547 429 :LLAIQDEVQ 1tuoA 366 :LAEQFKEVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73332 # 1szwA.429.165 read from T0547.t04.many.frag # found chain 1szwA in template set T0547 429 :LLAIQDEVQ 1szwA 144 :VEQRLIDIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=73333 # 2anuA.429.133 read from T0547.t04.many.frag # found chain 2anuA in template set T0547 429 :LLAIQDEVQ 2anuA 122 :VEEIVEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73334 # 1vlrA.429.251 read from T0547.t04.many.frag # found chain 1vlrA in template set T0547 429 :LLAIQDEVQ 1vlrA 240 :LRNILREGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73335 # 1vmbA.429.35 read from T0547.t04.many.frag # found chain 1vmbA in training set T0547 429 :LLAIQDEVQ 1vmbA 24 :RENLVERVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73336 # 2mhr.429.43 read from T0547.t04.many.frag # found chain 2mhr in training set T0547 429 :LLAIQDEVQ 2mhr 44 :LATLVKVTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73337 # 1ra6A.429.339 read from T0547.t04.many.frag # found chain 1ra6A in template set T0547 429 :LLAIQDEVQ 1ra6A 340 :ASLLAQSGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73338 # 1lfb.430.39 read from T0547.t04.many.frag # found chain 1lfb in template set T0547 430 :LAIQDEVQE 1lfb 40 :ETLVEECNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73339 # 1v54A.430.270 read from T0547.t04.many.frag # found chain 1v54A in training set T0547 430 :LAIQDEVQE 1v54A 271 :MGMVWAMMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=73340 # 1xg8A.430.28 read from T0547.t04.many.frag # found chain 1xg8A in template set T0547 430 :LAIQDEVQE 1xg8A 20 :KDIYDWLQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=73341 # 1mc2A.430.82 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 430 :LAIQDEVQE 1mc2A 1093 :QEMCECDKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73342 # 1f5qB.430.167 read from T0547.t04.many.frag # found chain 1f5qB in template set T0547 430 :LAIQDEVQE 1f5qB 168 :LNIYNLCRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=73343 # 1usgA.430.299 read from T0547.t04.many.frag # found chain 1usgA in training set T0547 430 :LAIQDEVQE 1usgA 300 :LALVKDLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73344 # 1ks9A.430.224 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 430 :LAIQDEVQE 1ks9A 225 :EDLRDYVMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73345 # 1wgzA.430.391 read from T0547.t04.many.frag # found chain 1wgzA in template set T0547 430 :LAIQDEVQE 1wgzA 392 :EAWAEKYRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73346 # 1vqoX.430.27 read from T0547.t04.many.frag # found chain 1vqoX in template set T0547 430 :LAIQDEVQE 1vqoX 27 :DKAMILIRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73347 # 1vctA.430.14 read from T0547.t04.many.frag # found chain 1vctA in template set T0547 430 :LAIQDEVQE 1vctA 15 :KEIFIEMKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73348 # 1zx5A.430.61 read from T0547.t04.many.frag # found chain 1zx5A in template set T0547 430 :LAIQDEVQE 1zx5A 61 :IELFSKHRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73349 # 1h32A.430.155 read from T0547.t04.many.frag # found chain 1h32A in training set T0547 430 :LAIQDEVQE 1h32A 156 :QSTWEKGRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73350 # 1na3A.430.9 read from T0547.t04.many.frag # found chain 1na3A in training set T0547 430 :LAIQDEVQE 1na3A 5 :EAWYNLGNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73351 # 1sr9A.430.477 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 430 :LAIQDEVQE 1sr9A 478 :KEMWDAFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73352 # 1vjxA.430.44 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 430 :LAIQDEVQE 1vjxA 33 :KKTFLELAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73353 # 1q2lA.430.690 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 430 :LAIQDEVQE 1q2lA 714 :TTLARDVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73354 # 1nd4A.430.137 read from T0547.t04.many.frag # found chain 1nd4A in template set T0547 430 :LAIQDEVQE 1nd4A 138 :KHRIERART Number of specific fragments extracted= 1 number of extra gaps= 0 total=73355 # 1yge.430.723 read from T0547.t04.many.frag # found chain 1yge in training set T0547 430 :LAIQDEVQE 1yge 724 :EEMINNHEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73356 # 2es9A.430.54 read from T0547.t04.many.frag # found chain 2es9A in template set T0547 430 :LAIQDEVQE 2es9A 55 :EVVVARGEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73357 # 1p7tA.430.515 read from T0547.t04.many.frag # found chain 1p7tA in template set T0547 430 :LAIQDEVQE 1p7tA 516 :ADMYSQKGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73358 # 1szwA.430.166 read from T0547.t04.many.frag # found chain 1szwA in template set T0547 430 :LAIQDEVQE 1szwA 145 :EQRLIDICV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73359 # 2atzA.430.83 read from T0547.t04.many.frag # found chain 2atzA in template set T0547 430 :LAIQDEVQE 2atzA 84 :ERFYHKAQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73360 # 1vlrA.430.252 read from T0547.t04.many.frag # found chain 1vlrA in template set T0547 430 :LAIQDEVQE 1vlrA 241 :RNILREGQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73361 # 1vmbA.430.36 read from T0547.t04.many.frag # found chain 1vmbA in training set T0547 430 :LAIQDEVQE 1vmbA 25 :ENLVERVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73362 # 1nu7D.430.186 read from T0547.t04.many.frag # found chain 1nu7D in template set T0547 430 :LAIQDEVQE 1nu7D 186 :LELKAKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73363 # 1tuoA.430.366 read from T0547.t04.many.frag # found chain 1tuoA in training set T0547 430 :LAIQDEVQE 1tuoA 367 :AEQFKEVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73364 # 1txkA.430.4 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 430 :LAIQDEVQE 1txkA 26 :DDVAKQAQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=73365 # 1zroA.430.266 read from T0547.t04.many.frag # found chain 1zroA in template set T0547 430 :LAIQDEVQE 1zroA 267 :SLLLNNCDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73366 # 1nd4A.430.167 read from T0547.t04.many.frag # found chain 1nd4A in template set T0547 430 :LAIQDEVQE 1nd4A 168 :AELFARLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73367 # 1gakA.430.80 read from T0547.t04.many.frag # found chain 1gakA in template set T0547 430 :LAIQDEVQE 1gakA 81 :KTLTKMGRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73368 # 1lfb.431.40 read from T0547.t04.many.frag # found chain 1lfb in template set T0547 431 :AIQDEVQER 1lfb 41 :TLVEECNRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73369 # 1mc2A.431.83 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 431 :AIQDEVQER 1mc2A 1094 :EMCECDKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73370 # 1vqoX.431.28 read from T0547.t04.many.frag # found chain 1vqoX in template set T0547 431 :AIQDEVQER 1vqoX 28 :KAMILIREH Number of specific fragments extracted= 1 number of extra gaps= 0 total=73371 # 1xg8A.431.29 read from T0547.t04.many.frag # found chain 1xg8A in template set T0547 431 :AIQDEVQER 1xg8A 21 :DIYDWLQPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73372 # 1v54A.431.271 read from T0547.t04.many.frag # found chain 1v54A in training set T0547 431 :AIQDEVQER 1v54A 272 :GMVWAMMSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73373 # 1wgzA.431.392 read from T0547.t04.many.frag # found chain 1wgzA in template set T0547 431 :AIQDEVQER 1wgzA 393 :AWAEKYRDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=73374 # 1f5qB.431.168 read from T0547.t04.many.frag # found chain 1f5qB in template set T0547 431 :AIQDEVQER 1f5qB 169 :NIYNLCRPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73375 # 1pq1A.431.88 read from T0547.t04.many.frag # found chain 1pq1A in training set T0547 431 :AIQDEVQER 1pq1A 89 :ALREAGDEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73376 # 1zx5A.431.62 read from T0547.t04.many.frag # found chain 1zx5A in template set T0547 431 :AIQDEVQER 1zx5A 62 :ELFSKHRDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73377 # 1na3A.431.10 read from T0547.t04.many.frag # found chain 1na3A in training set T0547 431 :AIQDEVQER 1na3A 6 :AWYNLGNAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73378 # 1vlrA.431.253 read from T0547.t04.many.frag # found chain 1vlrA in template set T0547 431 :AIQDEVQER 1vlrA 242 :NILREGQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73379 # 1h32A.431.156 read from T0547.t04.many.frag # found chain 1h32A in training set T0547 431 :AIQDEVQER 1h32A 157 :STWEKGREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73380 # 1ks9A.431.225 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 431 :AIQDEVQER 1ks9A 226 :DLRDYVMQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73381 # 1sr9A.431.478 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 431 :AIQDEVQER 1sr9A 479 :EMWDAFAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73382 # 1usgA.431.300 read from T0547.t04.many.frag # found chain 1usgA in training set Warning: unaligning (T0547)R439 (1usgA)N309 because G (3-10) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 1usgA 301 :ALVKDLKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=73383 # 1vjxA.431.45 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 431 :AIQDEVQER 1vjxA 34 :KTFLELADQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73384 # 1vctA.431.15 read from T0547.t04.many.frag # found chain 1vctA in template set T0547 431 :AIQDEVQER 1vctA 16 :EIFIEMKDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73385 # 1mkfA.431.45 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 431 :AIQDEVQER 1mkfA 46 :ECAGILKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73386 # 1q2lA.431.691 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 431 :AIQDEVQER 1q2lA 715 :TLARDVQKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73387 # 1gakA.431.81 read from T0547.t04.many.frag # found chain 1gakA in template set T0547 431 :AIQDEVQER 1gakA 82 :TLTKMGRFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73388 # 1iu4A.431.144 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)D434 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)N149 Warning: unaligning (T0547)E435 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)N149 T0547 431 :AIQ 1iu4A 145 :AYL T0547 436 :VQER 1iu4A 150 :LKKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73390 # 1txkA.431.5 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 431 :AIQDEVQER 1txkA 27 :DVAKQAQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73391 # 2es9A.431.55 read from T0547.t04.many.frag # found chain 2es9A in template set T0547 431 :AIQDEVQER 2es9A 56 :VVVARGEQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73392 # 1yge.431.724 read from T0547.t04.many.frag # found chain 1yge in training set T0547 431 :AIQDEVQER 1yge 725 :EMINNHEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73393 # 1szwA.431.167 read from T0547.t04.many.frag # found chain 1szwA in template set T0547 431 :AIQDEVQER 1szwA 146 :QRLIDICVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73394 # 1p7tA.431.516 read from T0547.t04.many.frag # found chain 1p7tA in template set T0547 431 :AIQDEVQER 1p7tA 517 :DMYSQKGDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73395 2cwyA expands to /projects/compbio/data/pdb/2cwy.pdb.gz 2cwyA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2cwyA.431.59 read from T0547.t04.many.frag # adding 2cwyA to template set # found chain 2cwyA in template set T0547 431 :AIQDEVQER 2cwyA 60 :RNLRKAEAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73396 # 1tuoA.431.367 read from T0547.t04.many.frag # found chain 1tuoA in training set T0547 431 :AIQDEVQER 1tuoA 368 :EQFKEVEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73397 # 1ylhA.431.527 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 431 :AIQDEVQER 1ylhA 508 :VKAEDLANR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73398 # 1rxqA.431.110 read from T0547.t04.many.frag # found chain 1rxqA in training set T0547 431 :AIQDEVQER 1rxqA 111 :GSLALLQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73399 # 1mc2A.432.84 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 432 :IQDEVQERY 1mc2A 1095 :MCECDKAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73400 # 1lfb.432.41 read from T0547.t04.many.frag # found chain 1lfb in template set T0547 432 :IQDEVQERY 1lfb 42 :LVEECNRAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73401 # 1vqoX.432.29 read from T0547.t04.many.frag # found chain 1vqoX in template set T0547 432 :IQDEVQERY 1vqoX 29 :AMILIREHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73402 # 1wgzA.432.393 read from T0547.t04.many.frag # found chain 1wgzA in template set T0547 432 :IQDEVQERY 1wgzA 394 :WAEKYRDHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73403 # 1xg8A.432.30 read from T0547.t04.many.frag # found chain 1xg8A in template set T0547 432 :IQDEVQERY 1xg8A 22 :IYDWLQPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73404 # 1v54A.432.272 read from T0547.t04.many.frag # found chain 1v54A in training set T0547 432 :IQDEVQERY 1v54A 273 :MVWAMMSIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73405 # 1pq1A.432.89 read from T0547.t04.many.frag # found chain 1pq1A in training set T0547 432 :IQDEVQERY 1pq1A 90 :LREAGDEFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73406 # 1zx5A.432.63 read from T0547.t04.many.frag # found chain 1zx5A in template set T0547 432 :IQDEVQERY 1zx5A 63 :LFSKHRDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73407 # 1f5qB.432.169 read from T0547.t04.many.frag # found chain 1f5qB in template set T0547 432 :IQDEVQERY 1f5qB 170 :IYNLCRPKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73408 # 1mkfA.432.46 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 432 :IQDEVQERY 1mkfA 47 :CAGILKDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73409 # 1vlrA.432.254 read from T0547.t04.many.frag # found chain 1vlrA in template set T0547 432 :IQDEVQERY 1vlrA 243 :ILREGQEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73410 # 1na3A.432.11 read from T0547.t04.many.frag # found chain 1na3A in training set T0547 432 :IQDEVQERY 1na3A 7 :WYNLGNAYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73411 # 1vjxA.432.46 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 432 :IQDEVQERY 1vjxA 35 :TFLELADQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73412 # 1ks9A.432.226 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 432 :IQDEVQERY 1ks9A 227 :LRDYVMQVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73413 # 1h32A.432.157 read from T0547.t04.many.frag # found chain 1h32A in training set T0547 432 :IQDEVQERY 1h32A 158 :TWEKGREIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73414 # 1sr9A.432.479 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 432 :IQDEVQERY 1sr9A 480 :MWDAFAEEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73415 # 1iu4A.432.145 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)D434 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)N149 Warning: unaligning (T0547)E435 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)N149 T0547 432 :IQ 1iu4A 146 :YL T0547 436 :VQERY 1iu4A 150 :LKKEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=73417 # 1ylhA.432.528 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 432 :IQDEVQERY 1ylhA 509 :KAEDLANRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73418 # 1q2lA.432.692 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 432 :IQDEVQERY 1q2lA 716 :LARDVQKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73419 # 1vctA.432.16 read from T0547.t04.many.frag # found chain 1vctA in template set T0547 432 :IQDEVQERY 1vctA 17 :IFIEMKDTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73420 # 1txkA.432.6 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 432 :IQDEVQERY 1txkA 28 :VAKQAQSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73421 # 1gakA.432.82 read from T0547.t04.many.frag # found chain 1gakA in template set T0547 432 :IQDEVQERY 1gakA 83 :LTKMGRFVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73422 2bs3C expands to /projects/compbio/data/pdb/2bs3.pdb.gz 2bs3C:Skipped atom 7177, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 7178, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 7179, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 7180, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 7181, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 7182, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 7183, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 7184, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 7185, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 7446, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 7447, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 7448, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 7449, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 7450, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 7451, because occupancy 0.000 <= existing 0.500 in 2bs3C Skipped atom 7452, because occupancy 0.000 <= existing 0.500 in 2bs3C Skipped atom 7453, because occupancy 0.000 <= existing 0.500 in 2bs3C Skipped atom 7454, because occupancy 0.000 <= existing 0.500 in 2bs3C Skipped atom 7455, because occupancy 0.000 <= existing 0.500 in 2bs3C Skipped atom 7456, because occupancy 0.000 <= existing 0.500 in 2bs3C Skipped atom 8551, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 8552, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 8553, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 8554, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 8555, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 8556, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 8557, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 8558, because occupancy 0.500 <= existing 0.500 in 2bs3C Skipped atom 8559, because occupancy 0.500 <= existing 0.500 in 2bs3C # 2bs3C.432.135 read from T0547.t04.many.frag # adding 2bs3C to template set # found chain 2bs3C in template set T0547 432 :IQDEVQERY 2bs3C 136 :MFFLGSVHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73423 # 1i4wA.432.270 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 432 :IQDEVQERY 1i4wA 259 :WDYVTRHLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=73424 # 1szwA.432.168 read from T0547.t04.many.frag # found chain 1szwA in template set T0547 432 :IQDEVQERY 1szwA 147 :RLIDICVKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73425 # 2a65A.432.377 read from T0547.t04.many.frag # found chain 2a65A in training set T0547 432 :IQDEVQERY 2a65A 378 :AVLWTAAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73426 # 1yge.432.725 read from T0547.t04.many.frag # found chain 1yge in training set T0547 432 :IQDEVQERY 1yge 726 :MINNHEKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73427 # 1usgA.432.301 read from T0547.t04.many.frag # found chain 1usgA in training set Warning: unaligning (T0547)Y440 (1usgA)G310 because S (epsilon) conformation "forbidden" or filtered. T0547 432 :IQDEVQER 1usgA 302 :LVKDLKAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=73428 # 1rxqA.432.111 read from T0547.t04.many.frag # found chain 1rxqA in training set T0547 432 :IQDEVQERY 1rxqA 112 :SLALLQELH Number of specific fragments extracted= 1 number of extra gaps= 0 total=73429 # 2cwyA.432.60 read from T0547.t04.many.frag # found chain 2cwyA in template set T0547 432 :IQDEVQERY 2cwyA 61 :NLRKAEARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73430 # 1mc2A.433.85 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 433 :QDEVQERYL 1mc2A 1096 :CECDKAFAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73431 # 1vqoX.433.30 read from T0547.t04.many.frag # found chain 1vqoX in template set T0547 433 :QDEVQERYL 1vqoX 30 :MILIREHLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73432 # 1lfb.433.42 read from T0547.t04.many.frag # found chain 1lfb in template set T0547 433 :QDEVQERYL 1lfb 43 :VEECNRAEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=73433 # 1pq1A.433.90 read from T0547.t04.many.frag # found chain 1pq1A in training set T0547 433 :QDEVQERYL 1pq1A 91 :REAGDEFEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73434 # 1wgzA.433.394 read from T0547.t04.many.frag # found chain 1wgzA in template set Warning: unaligning (T0547)L441 (1wgzA)G403 because L (left) conformation "forbidden" or filtered. T0547 433 :QDEVQERY 1wgzA 395 :AEKYRDHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=73435 # 1vlrA.433.255 read from T0547.t04.many.frag # found chain 1vlrA in template set T0547 433 :QDEVQERYL 1vlrA 244 :LREGQEAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73436 # 1xg8A.433.31 read from T0547.t04.many.frag # found chain 1xg8A in template set T0547 433 :QDEVQERYL 1xg8A 23 :YDWLQPLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73437 # 1mkfA.433.47 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 433 :QDEVQERYL 1mkfA 48 :AGILKDVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=73438 # 1zx5A.433.64 read from T0547.t04.many.frag # found chain 1zx5A in template set T0547 433 :QDEVQERYL 1zx5A 64 :FSKHRDELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73439 # 1v54A.433.273 read from T0547.t04.many.frag # found chain 1v54A in training set T0547 433 :QDEVQERYL 1v54A 274 :VWAMMSIGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73440 # 1vjxA.433.47 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 433 :QDEVQERYL 1vjxA 36 :FLELADQER Number of specific fragments extracted= 1 number of extra gaps= 0 total=73441 # 1ks9A.433.227 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 433 :QDEVQERYL 1ks9A 228 :RDYVMQVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=73442 # 1na3A.433.12 read from T0547.t04.many.frag # found chain 1na3A in training set T0547 433 :QDEVQERYL 1na3A 8 :YNLGNAYYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73443 # 2bs3C.433.136 read from T0547.t04.many.frag # found chain 2bs3C in template set T0547 433 :QDEVQERYL 2bs3C 137 :FFLGSVHLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73444 # 1iu4A.433.146 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)D434 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)N149 Warning: unaligning (T0547)E435 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)N149 T0547 433 :Q 1iu4A 147 :L T0547 436 :VQERYL 1iu4A 150 :LKKELA Number of specific fragments extracted= 2 number of extra gaps= 1 total=73446 # 1ylhA.433.529 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 433 :QDEVQERYL 1ylhA 510 :AEDLANRFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73447 # 1f5qB.433.170 read from T0547.t04.many.frag # found chain 1f5qB in template set T0547 433 :QDEVQERYL 1f5qB 171 :YNLCRPKIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73448 # 1h32A.433.158 read from T0547.t04.many.frag # found chain 1h32A in training set T0547 433 :QDEVQERYL 1h32A 159 :WEKGREIYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73449 # 1gakA.433.83 read from T0547.t04.many.frag # found chain 1gakA in template set T0547 433 :QDEVQERYL 1gakA 84 :TKMGRFVGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73450 # 1ir6A.433.260 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 433 :QDEVQERYL 1ir6A 300 :VGELHRLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73451 # 1txkA.433.7 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 433 :QDEVQERYL 1txkA 29 :AKQAQSLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73452 # 1sr9A.433.480 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 433 :QDEVQERYL 1sr9A 481 :WDAFAEEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73453 # 1i4wA.433.271 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 433 :QDEVQERYL 1i4wA 260 :DYVTRHLMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73454 # 1tzlA.433.197 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)L441 (1tzlA)Q207 because L (left) conformation "forbidden" or filtered. T0547 433 :QDEVQERY 1tzlA 199 :YTKAESYF Number of specific fragments extracted= 1 number of extra gaps= 1 total=73455 # 2fnaA.433.266 read from T0547.t04.many.frag # found chain 2fnaA in template set T0547 433 :QDEVQERYL 2fnaA 266 :LEYAKKLIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73456 # 1q2lA.433.693 read from T0547.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)L441 (1q2lA)G725 because L (left) conformation "forbidden" or filtered. T0547 433 :QDEVQERY 1q2lA 717 :ARDVQKQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=73457 # 2a65A.433.378 read from T0547.t04.many.frag # found chain 2a65A in training set T0547 433 :QDEVQERYL 2a65A 379 :VLWTAAIVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73458 # 1vctA.433.17 read from T0547.t04.many.frag # found chain 1vctA in template set T0547 433 :QDEVQERYL 1vctA 18 :FIEMKDTVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73459 # 1rxqA.433.112 read from T0547.t04.many.frag # found chain 1rxqA in training set T0547 433 :QDEVQERYL 1rxqA 113 :LALLQELHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73460 # 1l5aA.433.298 read from T0547.t04.many.frag # found chain 1l5aA in template set T0547 433 :QDEVQERYL 1l5aA 299 :GQAIRSLYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73461 # 1mc2A.434.86 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 434 :DEVQERYLV 1mc2A 1097 :ECDKAFAIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=73462 # 1vqoX.434.31 read from T0547.t04.many.frag # found chain 1vqoX in template set T0547 434 :DEVQERYLV 1vqoX 31 :ILIREHLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73463 # 1pq1A.434.91 read from T0547.t04.many.frag # found chain 1pq1A in training set T0547 434 :DEVQERYLV 1pq1A 92 :EAGDEFELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73464 # 1lfb.434.43 read from T0547.t04.many.frag # found chain 1lfb in template set T0547 434 :DEVQERYLV 1lfb 44 :EECNRAECI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73465 # 1wgzA.434.395 read from T0547.t04.many.frag # found chain 1wgzA in template set Warning: unaligning (T0547)L441 (1wgzA)G403 because L (left) conformation "forbidden" or filtered. T0547 434 :DEVQERY 1wgzA 396 :EKYRDHL T0547 442 :V 1wgzA 404 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=73467 # 1vlrA.434.256 read from T0547.t04.many.frag # found chain 1vlrA in template set T0547 434 :DEVQERYLV 1vlrA 245 :REGQEAILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73468 # 1zx5A.434.65 read from T0547.t04.many.frag # found chain 1zx5A in template set Warning: unaligning (T0547)V436 (1zx5A)H67 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V442 (1zx5A)G73 because S (epsilon) conformation "forbidden" or filtered. T0547 434 :DE 1zx5A 65 :SK T0547 437 :QERYL 1zx5A 68 :RDELL Number of specific fragments extracted= 2 number of extra gaps= 2 total=73470 # 1mkfA.434.48 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 434 :DEVQERYLV 1mkfA 49 :GILKDVLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73471 # 2bs3C.434.137 read from T0547.t04.many.frag # found chain 2bs3C in template set T0547 434 :DEVQERYLV 2bs3C 138 :FLGSVHLYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73472 # 1ylhA.434.530 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 434 :DEVQERYLV 1ylhA 511 :EDLANRFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73473 # 1xg8A.434.32 read from T0547.t04.many.frag # found chain 1xg8A in template set T0547 434 :DEVQERYLV 1xg8A 24 :DWLQPLLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73474 # 1vjxA.434.48 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 434 :DEVQERYLV 1vjxA 37 :LELADQERI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73475 # 1iu4A.434.147 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)D434 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)N149 Warning: unaligning (T0547)E435 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)N149 T0547 436 :VQERYLV 1iu4A 150 :LKKELAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=73476 # 1ks9A.434.228 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 434 :DEVQERYLV 1ks9A 229 :DYVMQVIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73477 # 1ir6A.434.261 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 434 :DEVQERYLV 1ir6A 301 :GELHRLNAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73478 # 1h32A.434.159 read from T0547.t04.many.frag # found chain 1h32A in training set T0547 434 :DEVQERYLV 1h32A 160 :EKGREIYYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73479 # 1l5aA.434.299 read from T0547.t04.many.frag # found chain 1l5aA in template set T0547 434 :DEVQERYLV 1l5aA 300 :QAIRSLYLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=73480 # 1i4wA.434.272 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 434 :DEVQERYLV 1i4wA 261 :YVTRHLMIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73481 # 1tzlA.434.198 read from T0547.t04.many.frag # found chain 1tzlA in template set T0547 434 :DEVQERYLV 1tzlA 200 :TKAESYFQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73482 # 1na3A.434.13 read from T0547.t04.many.frag # found chain 1na3A in training set T0547 434 :DEVQERYLV 1na3A 9 :NLGNAYYKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73483 # 1txkA.434.8 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 434 :DEVQERYLV 1txkA 30 :KQAQSLAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73484 # 1v54A.434.274 read from T0547.t04.many.frag # found chain 1v54A in training set T0547 434 :DEVQERYLV 1v54A 275 :WAMMSIGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73485 # 1f5qB.434.171 read from T0547.t04.many.frag # found chain 1f5qB in template set T0547 434 :DEVQERYLV 1f5qB 172 :NLCRPKIFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=73486 # 1e4fT.434.242 read from T0547.t04.many.frag # found chain 1e4fT in template set T0547 434 :DEVQERYLV 1e4fT 243 :KDVSAVLDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73487 # 1gakA.434.84 read from T0547.t04.many.frag # found chain 1gakA in template set T0547 434 :DEVQERYLV 1gakA 85 :KMGRFVGYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73488 # 1sr9A.434.481 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 434 :DEVQERYLV 1sr9A 482 :DAFAEEYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73489 # 2fnaA.434.267 read from T0547.t04.many.frag # found chain 2fnaA in template set T0547 434 :DEVQERYLV 2fnaA 267 :EYAKKLILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73490 # 2a65A.434.379 read from T0547.t04.many.frag # found chain 2a65A in training set T0547 434 :DEVQERYLV 2a65A 380 :LWTAAIVFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73491 # 1k5nA.434.64 read from T0547.t04.many.frag # found chain 1k5nA in training set T0547 434 :DEVQERYLV 1k5nA 65 :QICKAKAQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73492 # 1wehA.434.114 read from T0547.t04.many.frag # found chain 1wehA in training set T0547 434 :DEVQERYLV 1wehA 115 :VLAWNLLYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73493 # 1pq1A.435.92 read from T0547.t04.many.frag # found chain 1pq1A in training set T0547 435 :EVQERYLVN 1pq1A 93 :AGDEFELRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73494 # 1vqoX.435.32 read from T0547.t04.many.frag # found chain 1vqoX in template set T0547 435 :EVQERYLVN 1vqoX 32 :LIREHLAKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=73495 # 1mc2A.435.87 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 435 :EVQERYLVN 1mc2A 1098 :CDKAFAICL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73496 # 1wgzA.435.396 read from T0547.t04.many.frag # found chain 1wgzA in template set Warning: unaligning (T0547)L441 (1wgzA)G403 because L (left) conformation "forbidden" or filtered. T0547 435 :EVQERY 1wgzA 397 :KYRDHL T0547 442 :VN 1wgzA 404 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=73498 # 1lfb.435.44 read from T0547.t04.many.frag # found chain 1lfb in template set T0547 435 :EVQERYLVN 1lfb 45 :ECNRAECIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73499 # 1mkfA.435.49 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 435 :EVQERYLVN 1mkfA 50 :ILKDVLSKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73500 # 1vlrA.435.257 read from T0547.t04.many.frag # found chain 1vlrA in template set T0547 435 :EVQERYLVN 1vlrA 246 :EGQEAILKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73501 # 1ylhA.435.531 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 435 :EVQERYLVN 1ylhA 512 :DLANRFVKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73502 # 1zx5A.435.66 read from T0547.t04.many.frag # found chain 1zx5A in template set T0547 435 :EVQERYLVN 1zx5A 66 :KHRDELLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73503 # 2bs3C.435.138 read from T0547.t04.many.frag # found chain 2bs3C in template set T0547 435 :EVQERYLVN 2bs3C 139 :LGSVHLYIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=73504 # 1vjxA.435.49 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 435 :EVQERYLVN 1vjxA 38 :ELADQERIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=73505 # 1xg8A.435.33 read from T0547.t04.many.frag # found chain 1xg8A in template set T0547 435 :EVQERYLVN 1xg8A 25 :WLQPLLKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73506 # 1ks9A.435.229 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 435 :EVQERYLVN 1ks9A 230 :YVMQVIDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73507 # 1ir6A.435.262 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 435 :EVQERYLVN 1ir6A 302 :ELHRLNARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73508 # 1i4wA.435.273 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 435 :EVQERYLVN 1i4wA 262 :VTRHLMILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73509 # 1wehA.435.115 read from T0547.t04.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)N443 (1wehA)R124 because L (left) conformation "forbidden" or filtered. T0547 435 :EVQERYLV 1wehA 116 :LAWNLLYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=73510 # 1iu4A.435.148 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)E435 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)N149 T0547 436 :VQERYLVN 1iu4A 150 :LKKELANG Number of specific fragments extracted= 1 number of extra gaps= 1 total=73511 # 1txkA.435.9 read from T0547.t04.many.frag # found chain 1txkA in template set Warning: unaligning (T0547)N443 (1txkA)G39 because P (beta_P) conformation "forbidden" or filtered. T0547 435 :EVQERYLV 1txkA 31 :QAQSLAGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=73512 # 1l5aA.435.300 read from T0547.t04.many.frag # found chain 1l5aA in template set T0547 435 :EVQERYLVN 1l5aA 301 :AIRSLYLHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73513 # 1gakA.435.85 read from T0547.t04.many.frag # found chain 1gakA in template set T0547 435 :EVQERYLVN 1gakA 86 :MGRFVGYRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73514 # 1k5nA.435.65 read from T0547.t04.many.frag # found chain 1k5nA in training set T0547 435 :EVQERYLVN 1k5nA 66 :ICKAKAQTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73515 # 1sr9A.435.482 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 435 :EVQERYLVN 1sr9A 483 :AFAEEYLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=73516 # 1kwgA.435.157 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 435 :EVQERYLVN 1kwgA 158 :AFRGWLEAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73517 # 1f5qB.435.172 read from T0547.t04.many.frag # found chain 1f5qB in template set T0547 435 :EVQERYLVN 1f5qB 173 :LCRPKIFCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73518 # 1n7zA.435.69 read from T0547.t04.many.frag # found chain 1n7zA in template set T0547 435 :EVQERYLVN 1n7zA 70 :DMWTHMMGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73519 # 1h32A.435.160 read from T0547.t04.many.frag # found chain 1h32A in training set T0547 435 :EVQERYLVN 1h32A 161 :KGREIYYTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73520 # 1v54A.435.275 read from T0547.t04.many.frag # found chain 1v54A in training set T0547 435 :EVQERYLVN 1v54A 276 :AMMSIGFLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73521 # 2fnaA.435.268 read from T0547.t04.many.frag # found chain 2fnaA in template set T0547 435 :EVQERYLVN 2fnaA 268 :YAKKLILKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73522 # 1na3A.435.14 read from T0547.t04.many.frag # found chain 1na3A in training set T0547 435 :EVQERYLVN 1na3A 10 :LGNAYYKQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73523 # 1tzlA.435.199 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)L441 (1tzlA)Q207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1tzlA)G209 because Y (epsilon') conformation "forbidden" or filtered. T0547 435 :EVQERY 1tzlA 201 :KAESYF T0547 442 :V 1tzlA 208 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=73525 # 1pq1A.436.93 read from T0547.t04.many.frag # found chain 1pq1A in training set T0547 436 :VQERYLVNF 1pq1A 94 :GDEFELRYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73526 # 1vqoX.436.33 read from T0547.t04.many.frag # found chain 1vqoX in template set Warning: unaligning (T0547)F444 (1vqoX)F41 because G (3-10) conformation "forbidden" or filtered. T0547 436 :VQERYLVN 1vqoX 33 :IREHLAKH Number of specific fragments extracted= 1 number of extra gaps= 1 total=73527 # 1mc2A.436.88 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 436 :VQERYLVNF 1mc2A 1099 :DKAFAICLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73528 # 1lfb.436.45 read from T0547.t04.many.frag # found chain 1lfb in template set T0547 436 :VQERYLVNF 1lfb 46 :CNRAECIQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73529 # 1wgzA.436.397 read from T0547.t04.many.frag # found chain 1wgzA in template set T0547 436 :VQERYLVNF 1wgzA 398 :YRDHLGVAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=73530 # 1ylhA.436.532 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 436 :VQERYLVNF 1ylhA 513 :LANRFVKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73531 # 1mkfA.436.50 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 436 :VQERYLVNF 1mkfA 51 :LKDVLSKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73532 # 1wehA.436.116 read from T0547.t04.many.frag # found chain 1wehA in training set T0547 436 :VQERYLVNF 1wehA 117 :AWNLLYLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73533 # 1zx5A.436.67 read from T0547.t04.many.frag # found chain 1zx5A in template set Warning: unaligning (T0547)V442 (1zx5A)G73 because S (epsilon) conformation "forbidden" or filtered. T0547 436 :VQERYL 1zx5A 67 :HRDELL T0547 443 :NF 1zx5A 74 :RA Number of specific fragments extracted= 2 number of extra gaps= 1 total=73535 # 2bs3C.436.139 read from T0547.t04.many.frag # found chain 2bs3C in template set T0547 436 :VQERYLVNF 2bs3C 140 :GSVHLYIMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=73536 # 1vlrA.436.258 read from T0547.t04.many.frag # found chain 1vlrA in template set T0547 436 :VQERYLVNF 1vlrA 247 :GQEAILKRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73537 # 1vjxA.436.50 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 436 :VQERYLVNF 1vjxA 39 :LADQERIHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73538 # 1ks9A.436.230 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 436 :VQERYLVNF 1ks9A 231 :VMQVIDATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73539 # 1i4wA.436.274 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 436 :VQERYLVNF 1i4wA 263 :TRHLMILKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73540 # 1l5aA.436.301 read from T0547.t04.many.frag # found chain 1l5aA in template set T0547 436 :VQERYLVNF 1l5aA 302 :IRSLYLHGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73541 # 1ir6A.436.263 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 436 :VQERYLVNF 1ir6A 303 :LHRLNARRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73542 # 1xg8A.436.34 read from T0547.t04.many.frag # found chain 1xg8A in template set T0547 436 :VQERYLVNF 1xg8A 26 :LQPLLKRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73543 # 1iu4A.436.149 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)F444 (1iu4A)N158 because L (left) conformation "forbidden" or filtered. T0547 436 :VQERYLVN 1iu4A 150 :LKKELANG Number of specific fragments extracted= 1 number of extra gaps= 1 total=73544 # 1txkA.436.10 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 436 :VQERYLVNF 1txkA 32 :AQSLAGKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73545 # 1efdN.436.224 read from T0547.t04.many.frag # found chain 1efdN in template set T0547 436 :VQERYLVNF 1efdN 255 :WQAMPFVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73546 # 1kwgA.436.158 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 436 :VQERYLVNF 1kwgA 159 :FRGWLEARY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73547 # 1k5nA.436.66 read from T0547.t04.many.frag # found chain 1k5nA in training set T0547 436 :VQERYLVNF 1k5nA 67 :CKAKAQTDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73548 # 1tzlA.436.200 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)L441 (1tzlA)Q207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1tzlA)G209 because Y (epsilon') conformation "forbidden" or filtered. T0547 436 :VQERY 1tzlA 202 :AESYF T0547 442 :V 1tzlA 208 :T T0547 444 :F 1tzlA 210 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=73551 # 1v54A.436.276 read from T0547.t04.many.frag # found chain 1v54A in training set Warning: unaligning (T0547)F444 (1v54A)F285 because G (3-10) conformation "forbidden" or filtered. T0547 436 :VQERYLVN 1v54A 277 :MMSIGFLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=73552 # 1r5lA.436.242 read from T0547.t04.many.frag # found chain 1r5lA in training set T0547 436 :VQERYLVNF 1r5lA 259 :WTNFIMKSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73553 # 1tjvA.436.395 read from T0547.t04.many.frag # found chain 1tjvA in template set T0547 436 :VQERYLVNF 1tjvA 396 :AVHLAETKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73554 # 1n7zA.436.70 read from T0547.t04.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)R439 (1n7zA)H74 because G (3-10) conformation "forbidden" or filtered. T0547 436 :VQE 1n7zA 71 :MWT T0547 440 :YLVNF 1n7zA 75 :MMGTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=73556 # 1or7A.436.55 read from T0547.t04.many.frag # found chain 1or7A in template set Warning: unaligning (T0547)N443 (1or7A)A60 because G (3-10) conformation "forbidden" or filtered. T0547 436 :VQERYLV 1or7A 53 :AFIKAYR T0547 444 :F 1or7A 61 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=73558 # 2fnaA.436.269 read from T0547.t04.many.frag # found chain 2fnaA in template set T0547 436 :VQERYLVNF 2fnaA 269 :AKKLILKEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73559 # 1sr9A.436.483 read from T0547.t04.many.frag # found chain 1sr9A in template set T0547 436 :VQERYLVNF 1sr9A 484 :FAEEYLAPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73560 # 1pq1A.437.94 read from T0547.t04.many.frag # found chain 1pq1A in training set Warning: unaligning (T0547)N443 (1pq1A)Y101 because G (3-10) conformation "forbidden" or filtered. T0547 437 :QERYLV 1pq1A 95 :DEFELR T0547 444 :FS 1pq1A 102 :RR Number of specific fragments extracted= 2 number of extra gaps= 1 total=73562 # 1vqoX.437.34 read from T0547.t04.many.frag # found chain 1vqoX in template set Warning: unaligning (T0547)F444 (1vqoX)F41 because G (3-10) conformation "forbidden" or filtered. T0547 437 :QERYLVN 1vqoX 34 :REHLAKH T0547 445 :S 1vqoX 42 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=73564 # 1wgzA.437.398 read from T0547.t04.many.frag # found chain 1wgzA in template set Warning: unaligning (T0547)Y440 (1wgzA)L402 because G (3-10) conformation "forbidden" or filtered. T0547 437 :QER 1wgzA 399 :RDH T0547 441 :LVNFS 1wgzA 403 :GVAPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=73566 # 1lfb.437.46 read from T0547.t04.many.frag # found chain 1lfb in template set T0547 437 :QERYLVNFS 1lfb 47 :NRAECIQRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73567 # 1mc2A.437.89 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 437 :QERYLVNFS 1mc2A 1100 :KAFAICLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73568 # 1wehA.437.117 read from T0547.t04.many.frag # found chain 1wehA in training set T0547 437 :QERYLVNFS 1wehA 118 :WNLLYLRRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73569 # 1mkfA.437.51 read from T0547.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)N443 (1mkfA)N58 because D (zeta) conformation "forbidden" or filtered. T0547 437 :QERYLV 1mkfA 52 :KDVLSK T0547 444 :FS 1mkfA 59 :LH Number of specific fragments extracted= 2 number of extra gaps= 1 total=73571 # 1ylhA.437.533 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 437 :QERYLVNFS 1ylhA 514 :ANRFVKNFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73572 # 1vlrA.437.259 read from T0547.t04.many.frag # found chain 1vlrA in template set T0547 437 :QERYLVNFS 1vlrA 248 :QEAILKRYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73573 # 1ks9A.437.231 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 437 :QERYLVNFS 1ks9A 232 :MQVIDATAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73574 # 1efdN.437.225 read from T0547.t04.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)S445 (1efdN)G264 because L (left) conformation "forbidden" or filtered. T0547 437 :QERYLVNF 1efdN 256 :QAMPFVRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=73575 # 2bs3C.437.140 read from T0547.t04.many.frag # found chain 2bs3C in template set T0547 437 :QERYLVNFS 2bs3C 141 :SVHLYIMMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73576 # 1txkA.437.11 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 437 :QERYLVNFS 1txkA 33 :QSLAGKGYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73577 # 1vjxA.437.51 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 437 :QERYLVNFS 1vjxA 40 :ADQERIHAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73578 # 1l5aA.437.302 read from T0547.t04.many.frag # found chain 1l5aA in template set T0547 437 :QERYLVNFS 1l5aA 303 :RSLYLHGRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73579 # 1zx5A.437.68 read from T0547.t04.many.frag # found chain 1zx5A in template set T0547 437 :QERYLVNFS 1zx5A 68 :RDELLGRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73580 # 1i4wA.437.275 read from T0547.t04.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)V442 (1i4wA)L269 because G (3-10) conformation "forbidden" or filtered. T0547 437 :QERYL 1i4wA 264 :RHLMI T0547 443 :NFS 1i4wA 270 :KRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=73582 # 1ir6A.437.264 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 437 :QERYLVNFS 1ir6A 304 :HRLNARRQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73583 # 1xg8A.437.35 read from T0547.t04.many.frag # found chain 1xg8A in template set T0547 437 :QERYLVNFS 1xg8A 27 :QPLLKRKYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=73584 # 1tzlA.437.201 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)L441 (1tzlA)Q207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1tzlA)G209 because Y (epsilon') conformation "forbidden" or filtered. T0547 437 :QERY 1tzlA 203 :ESYF T0547 442 :V 1tzlA 208 :T T0547 444 :FS 1tzlA 210 :TD Number of specific fragments extracted= 3 number of extra gaps= 2 total=73587 # 1tjvA.437.396 read from T0547.t04.many.frag # found chain 1tjvA in template set Warning: unaligning (T0547)F444 (1tjvA)G404 because L (left) conformation "forbidden" or filtered. T0547 437 :QERYLVN 1tjvA 397 :VHLAETK T0547 445 :S 1tjvA 405 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=73589 # 1k5nA.437.67 read from T0547.t04.many.frag # found chain 1k5nA in training set T0547 437 :QERYLVNFS 1k5nA 68 :KAKAQTDRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73590 # 1v54A.437.277 read from T0547.t04.many.frag # found chain 1v54A in training set T0547 437 :QERYLVNFS 1v54A 278 :MSIGFLGFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73591 # 1kwgA.437.159 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 437 :QERYLVNFS 1kwgA 160 :RGWLEARYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73592 # 1r5lA.437.243 read from T0547.t04.many.frag # found chain 1r5lA in training set T0547 437 :QERYLVNFS 1r5lA 260 :TNFIMKSED Number of specific fragments extracted= 1 number of extra gaps= 0 total=73593 # 1m1lA.437.118 read from T0547.t04.many.frag # found chain 1m1lA in template set T0547 437 :QERYLVNFS 1m1lA 145 :ARYVFQSEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73594 # 1l4dB.437.58 read from T0547.t04.many.frag # found chain 1l4dB in template set Warning: unaligning (T0547)N443 (1l4dB)N90 because G (3-10) conformation "forbidden" or filtered. T0547 437 :QERYLV 1l4dB 84 :QEQLIA T0547 444 :FS 1l4dB 91 :VH Number of specific fragments extracted= 2 number of extra gaps= 1 total=73596 # 2fnaA.437.270 read from T0547.t04.many.frag # found chain 2fnaA in template set T0547 437 :QERYLVNFS 2fnaA 270 :KKLILKEFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73597 # 1or7A.437.56 read from T0547.t04.many.frag # found chain 1or7A in template set T0547 437 :QERYLVNFS 1or7A 54 :FIKAYRALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73598 1twfF expands to /projects/compbio/data/pdb/1twf.pdb.gz 1twfF:# 1twfF.437.97 read from T0547.t04.many.frag # adding 1twfF to template set # found chain 1twfF in template set Warning: unaligning (T0547)S445 (1twfF)P106 because P (beta_P) conformation "forbidden" or filtered. T0547 437 :QERYLVNF 1twfF 98 :ALQISMNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=73599 # 1pq1A.438.95 read from T0547.t04.many.frag # found chain 1pq1A in training set T0547 438 :ERYLVNFSL 1pq1A 96 :EFELRYRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73600 # 1vqoX.438.35 read from T0547.t04.many.frag # found chain 1vqoX in template set Warning: unaligning (T0547)L446 (1vqoX)V43 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :ERYLVNFS 1vqoX 35 :EHLAKHFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=73601 # 1wehA.438.118 read from T0547.t04.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)S445 (1wehA)G126 because L (left) conformation "forbidden" or filtered. T0547 438 :ERYLVNF 1wehA 119 :NLLYLRR T0547 446 :L 1wehA 127 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=73603 # 1lfb.438.47 read from T0547.t04.many.frag # found chain 1lfb in template set Warning: unaligning (T0547)S445 (1lfb)G55 because L (left) conformation "forbidden" or filtered. T0547 438 :ERYLVNF 1lfb 48 :RAECIQR T0547 446 :L 1lfb 56 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=73605 # 1efdN.438.226 read from T0547.t04.many.frag # found chain 1efdN in template set T0547 438 :ERYLVNFSL 1efdN 257 :AMPFVRAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73606 # 1mc2A.438.90 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 438 :ERYLVNFSL 1mc2A 1101 :AFAICLREN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73607 # 1wgzA.438.399 read from T0547.t04.many.frag # found chain 1wgzA in template set Warning: unaligning (T0547)L446 (1wgzA)D408 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :ERYLVNFS 1wgzA 400 :DHLGVAPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=73608 # 1ylhA.438.534 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 438 :ERYLVNFSL 1ylhA 515 :NRFVKNFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73609 # 1mkfA.438.52 read from T0547.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)N443 (1mkfA)N58 because D (zeta) conformation "forbidden" or filtered. T0547 438 :ERYLV 1mkfA 53 :DVLSK T0547 444 :FSL 1mkfA 59 :LHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73611 # 1vlrA.438.260 read from T0547.t04.many.frag # found chain 1vlrA in template set Warning: unaligning (T0547)S445 (1vlrA)Q256 because L (left) conformation "forbidden" or filtered. T0547 438 :ERYLVNF 1vlrA 249 :EAILKRY T0547 446 :L 1vlrA 257 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=73613 # 1tzlA.438.202 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)N443 (1tzlA)G209 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1tzlA)D211 because G (3-10) conformation "forbidden" or filtered. T0547 438 :ERYLV 1tzlA 204 :SYFQT T0547 444 :F 1tzlA 210 :T T0547 446 :L 1tzlA 212 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=73616 # 1ks9A.438.232 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 438 :ERYLVNFSL 1ks9A 233 :QVIDATAEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73617 # 2bs3C.438.141 read from T0547.t04.many.frag # found chain 2bs3C in template set T0547 438 :ERYLVNFSL 2bs3C 142 :VHLYIMMTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73618 # 2fckA.438.28 read from T0547.t04.many.frag # found chain 2fckA in training set T0547 438 :ERYLVNFSL 2fckA 26 :VQCIRQSQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73619 # 1m1lA.438.119 read from T0547.t04.many.frag # found chain 1m1lA in template set T0547 438 :ERYLVNFSL 1m1lA 146 :RYVFQSENT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73620 # 2erbA.438.23 read from T0547.t04.many.frag # found chain 2erbA in training set T0547 438 :ERYLVNFSL 2erbA 24 :DICLGKTGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73621 # 1i4wA.438.276 read from T0547.t04.many.frag # found chain 1i4wA in template set T0547 438 :ERYLVNFSL 1i4wA 265 :HLMILKRTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=73622 # 1vjxA.438.52 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 438 :ERYLVNFSL 1vjxA 41 :DQERIHAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73623 # 1v54A.438.278 read from T0547.t04.many.frag # found chain 1v54A in training set T0547 438 :ERYLVNFSL 1v54A 279 :SIGFLGFIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73624 # 1txkA.438.12 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 438 :ERYLVNFSL 1txkA 34 :SLAGKGYET Number of specific fragments extracted= 1 number of extra gaps= 0 total=73625 # 2bswA.438.17 read from T0547.t04.many.frag # found chain 2bswA in template set T0547 438 :ERYLVNFSL 2bswA 18 :RILRPNQPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73626 # 1ir6A.438.265 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 438 :ERYLVNFSL 1ir6A 305 :RLNARRQTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73627 # 1k5nA.438.68 read from T0547.t04.many.frag # found chain 1k5nA in training set T0547 438 :ERYLVNFSL 1k5nA 69 :AKAQTDRED Number of specific fragments extracted= 1 number of extra gaps= 0 total=73628 # 1kwgA.438.160 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 438 :ERYLVNFSL 1kwgA 161 :GWLEARYGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73629 # 1gyxA.438.25 read from T0547.t04.many.frag # found chain 1gyxA in training set Warning: unaligning (T0547)S445 (1gyxA)N33 because L (left) conformation "forbidden" or filtered. T0547 438 :ERYLVNF 1gyxA 26 :DVIIRHL T0547 446 :L 1gyxA 34 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=73631 # 1pa7A.438.25 read from T0547.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)L441 (1pa7A)Q29 because L (left) conformation "forbidden" or filtered. T0547 438 :ERY 1pa7A 26 :ESL T0547 442 :VNFSL 1pa7A 30 :LNLTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=73633 # 1l5aA.438.303 read from T0547.t04.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)S445 (1l5aA)Y311 because P (beta_P) conformation "forbidden" or filtered. T0547 438 :ERYLVNF 1l5aA 304 :SLYLHGR T0547 446 :L 1l5aA 312 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=73635 # 1r5lA.438.244 read from T0547.t04.many.frag # found chain 1r5lA in training set T0547 438 :ERYLVNFSL 1r5lA 261 :NFIMKSEDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73636 # 1l4dB.438.59 read from T0547.t04.many.frag # found chain 1l4dB in template set T0547 438 :ERYLVNFSL 1l4dB 85 :EQLIANVHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=73637 # 1tjvA.438.397 read from T0547.t04.many.frag # found chain 1tjvA in template set T0547 438 :ERYLVNFSL 1tjvA 398 :HLAETKGIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73638 # 1pq1A.439.96 read from T0547.t04.many.frag # found chain 1pq1A in training set T0547 439 :RYLVNFSLF 1pq1A 97 :FELRYRRAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73639 # 1vqoX.439.36 read from T0547.t04.many.frag # found chain 1vqoX in template set Warning: unaligning (T0547)S445 (1vqoX)S42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L446 (1vqoX)V43 because Y (epsilon') conformation "forbidden" or filtered. T0547 439 :RYLVNF 1vqoX 36 :HLAKHF T0547 447 :F 1vqoX 44 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=73641 # 2fckA.439.29 read from T0547.t04.many.frag # found chain 2fckA in training set T0547 439 :RYLVNFSLF 2fckA 27 :QCIRQSQTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73642 # 1efdN.439.227 read from T0547.t04.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)S445 (1efdN)G264 because L (left) conformation "forbidden" or filtered. T0547 439 :RYLVNF 1efdN 258 :MPFVRA T0547 446 :LF 1efdN 265 :RF Number of specific fragments extracted= 2 number of extra gaps= 1 total=73644 # 1wehA.439.119 read from T0547.t04.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)N443 (1wehA)R124 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1wehA)G126 because L (left) conformation "forbidden" or filtered. T0547 439 :RYLV 1wehA 120 :LLYL T0547 444 :F 1wehA 125 :R T0547 446 :LF 1wehA 127 :VG Number of specific fragments extracted= 3 number of extra gaps= 2 total=73647 # 1lfb.439.48 read from T0547.t04.many.frag # found chain 1lfb in template set Warning: unaligning (T0547)S445 (1lfb)G55 because L (left) conformation "forbidden" or filtered. T0547 439 :RYLVNF 1lfb 49 :AECIQR T0547 446 :LF 1lfb 56 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=73649 # 1ylhA.439.535 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 439 :RYLVNFSLF 1ylhA 516 :RFVKNFVKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73650 # 1wgzA.439.400 read from T0547.t04.many.frag # found chain 1wgzA in template set Warning: unaligning (T0547)L441 (1wgzA)G403 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1wgzA)A405 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L446 (1wgzA)D408 because Y (epsilon') conformation "forbidden" or filtered. T0547 439 :RY 1wgzA 401 :HL T0547 442 :V 1wgzA 404 :V T0547 444 :FS 1wgzA 406 :PK T0547 447 :F 1wgzA 409 :Y Number of specific fragments extracted= 4 number of extra gaps= 3 total=73654 # 1vp6A.439.10 read from T0547.t04.many.frag # found chain 1vp6A in training set T0547 439 :RYLVNFSLF 1vp6A 228 :QLVAAVPLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73655 # 1vlrA.439.261 read from T0547.t04.many.frag # found chain 1vlrA in template set Warning: unaligning (T0547)S445 (1vlrA)Q256 because L (left) conformation "forbidden" or filtered. T0547 439 :RYLVNF 1vlrA 250 :AILKRY T0547 446 :LF 1vlrA 257 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=73657 # 2bs3C.439.142 read from T0547.t04.many.frag # found chain 2bs3C in template set T0547 439 :RYLVNFSLF 2bs3C 143 :HLYIMMTQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=73658 # 2a1rA.439.325 read from T0547.t04.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)L446 (2a1rA)P333 because C (cis) conformation "forbidden" or filtered. T0547 439 :RYLVNFS 2a1rA 326 :KLMASTQ T0547 447 :F 2a1rA 334 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=73660 # 1mc2A.439.91 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 439 :RYLVNFSLF 1mc2A 1102 :FAICLRENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73661 # 1tzlA.439.203 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)L441 (1tzlA)Q207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1tzlA)G209 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F444 (1tzlA)T210 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F447 (1tzlA)F213 because G (3-10) conformation "forbidden" or filtered. T0547 439 :RY 1tzlA 205 :YF T0547 442 :V 1tzlA 208 :T T0547 445 :SL 1tzlA 211 :DQ Number of specific fragments extracted= 3 number of extra gaps= 3 total=73664 # 1ks9A.439.233 read from T0547.t04.many.frag # found chain 1ks9A in training set Warning: unaligning (T0547)N443 (1ks9A)T238 because G (3-10) conformation "forbidden" or filtered. T0547 439 :RYLV 1ks9A 234 :VIDA T0547 444 :FSLF 1ks9A 239 :AENI Number of specific fragments extracted= 2 number of extra gaps= 1 total=73666 # 1vjxA.439.53 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 439 :RYLVNFSLF 1vjxA 42 :QERIHAEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73667 # 1kwgA.439.161 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 439 :RYLVNFSLF 1kwgA 162 :WLEARYGTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73668 # 1mkfA.439.53 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 439 :RYLVNFSLF 1mkfA 54 :VLSKNLHEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73669 # 1m1lA.439.120 read from T0547.t04.many.frag # found chain 1m1lA in template set T0547 439 :RYLVNFSLF 1m1lA 147 :YVFQSENTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73670 # 1mpgA.439.140 read from T0547.t04.many.frag # found chain 1mpgA in training set T0547 439 :RYLVNFSLF 1mpgA 141 :LYGERLDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73671 # 2erbA.439.24 read from T0547.t04.many.frag # found chain 2erbA in training set Warning: unaligning (T0547)S445 (2erbA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 439 :RYLVNF 2erbA 25 :ICLGKT T0547 446 :LF 2erbA 32 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=73673 # 1xhnA.439.133 read from T0547.t04.many.frag # found chain 1xhnA in template set T0547 439 :RYLVNFSLF 1xhnA 134 :SLFIRHPEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=73674 # 1svsA.439.249 read from T0547.t04.many.frag # found chain 1svsA in training set T0547 439 :RYLVNFSLF 1svsA 251 :DSICNNKWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73675 1y6zA expands to /projects/compbio/data/pdb/1y6z.pdb.gz 1y6zA:Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 892, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 894, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 896, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 898, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 900, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 902, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 904, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 949, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 951, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 953, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 955, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 957, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 959, because occupancy 0.500 <= existing 0.500 in 1y6zA # 1y6zA.439.78 read from T0547.t04.many.frag # adding 1y6zA to template set # found chain 1y6zA in template set Warning: unaligning (T0547)R439 (1y6zA)R77 because T (delta_L) conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1y6zA 78 :VFINDKFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=73676 # 1k5nA.439.69 read from T0547.t04.many.frag # found chain 1k5nA in training set T0547 439 :RYLVNFSLF 1k5nA 70 :KAQTDREDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73677 # 2bswA.439.18 read from T0547.t04.many.frag # found chain 2bswA in template set Warning: unaligning (T0547)L441 (2bswA)R21 because D (zeta) conformation "forbidden" or filtered. T0547 439 :RY 2bswA 19 :IL T0547 442 :VNFSLF 2bswA 22 :PNQPIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73679 # 1h5uA.439.729 read from T0547.t04.many.frag # found chain 1h5uA in template set T0547 439 :RYLVNFSLF 1h5uA 730 :EYYDRIPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73680 # 1h16A.439.585 read from T0547.t04.many.frag # found chain 1h16A in training set T0547 439 :RYLVNFSLF 1h16A 586 :KKIQKLHTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73681 # 1l4dB.439.60 read from T0547.t04.many.frag # found chain 1l4dB in template set T0547 439 :RYLVNFSLF 1l4dB 86 :QLIANVHSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73682 # 1ufyA.439.90 read from T0547.t04.many.frag # found chain 1ufyA in training set T0547 439 :RYLVNFSLF 1ufyA 91 :LALWNTDTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=73683 # 1pq1A.440.97 read from T0547.t04.many.frag # found chain 1pq1A in training set T0547 440 :YLVNFSLFQ 1pq1A 98 :ELRYRRAFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=73684 # 1vqoX.440.37 read from T0547.t04.many.frag # found chain 1vqoX in template set Warning: unaligning (T0547)L446 (1vqoX)V43 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YLVNFS 1vqoX 37 :LAKHFS T0547 447 :FQ 1vqoX 44 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73686 # 2fckA.440.30 read from T0547.t04.many.frag # found chain 2fckA in training set T0547 440 :YLVNFSLFQ 2fckA 28 :CIRQSQTLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=73687 # 1vp6A.440.11 read from T0547.t04.many.frag # found chain 1vp6A in training set T0547 440 :YLVNFSLFQ 1vp6A 229 :LVAAVPLFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73688 # 1efdN.440.228 read from T0547.t04.many.frag # found chain 1efdN in template set T0547 440 :YLVNFSLFQ 1efdN 259 :PFVRAGRFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73689 # 1ylhA.440.536 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 440 :YLVNFSLFQ 1ylhA 517 :FVKNFVKYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73690 # 1y6zA.440.79 read from T0547.t04.many.frag # found chain 1y6zA in template set Warning: unaligning (T0547)S445 (1y6zA)K83 because G (3-10) conformation "forbidden" or filtered. T0547 440 :YLVNF 1y6zA 78 :VFIND T0547 446 :LFQ 1y6zA 84 :FSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73692 # 1vjxA.440.54 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 440 :YLVNFSLFQ 1vjxA 43 :ERIHAEIFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73693 # 2a1rA.440.326 read from T0547.t04.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)L446 (2a1rA)P333 because C (cis) conformation "forbidden" or filtered. T0547 440 :YLVNFS 2a1rA 327 :LMASTQ T0547 447 :FQ 2a1rA 334 :FK Number of specific fragments extracted= 2 number of extra gaps= 1 total=73695 # 1vlrA.440.262 read from T0547.t04.many.frag # found chain 1vlrA in template set T0547 440 :YLVNFSLFQ 1vlrA 251 :ILKRYQVTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73696 # 1wehA.440.120 read from T0547.t04.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)S445 (1wehA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1wehA)R129 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YLVNF 1wehA 121 :LYLRR T0547 446 :LF 1wehA 127 :VG Number of specific fragments extracted= 2 number of extra gaps= 2 total=73698 # 1mc2A.440.92 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 440 :YLVNFSLFQ 1mc2A 1103 :AICLRENLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73699 # 1tzlA.440.204 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)L441 (1tzlA)Q207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F447 (1tzlA)F213 because G (3-10) conformation "forbidden" or filtered. T0547 440 :Y 1tzlA 206 :F T0547 442 :VNFSL 1tzlA 208 :TGTDQ T0547 448 :Q 1tzlA 214 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=73702 # 1mkfA.440.54 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 440 :YLVNFSLFQ 1mkfA 55 :LSKNLHELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73703 # 2bs3C.440.143 read from T0547.t04.many.frag # found chain 2bs3C in template set T0547 440 :YLVNFSLFQ 2bs3C 144 :LYIMMTQPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73704 # 1lfb.440.49 read from T0547.t04.many.frag # found chain 1lfb in template set Warning: unaligning (T0547)S445 (1lfb)G55 because L (left) conformation "forbidden" or filtered. T0547 440 :YLVNF 1lfb 50 :ECIQR T0547 446 :LFQ 1lfb 56 :VSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=73706 # 1kwgA.440.162 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 440 :YLVNFSLFQ 1kwgA 163 :LEARYGTIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73707 1b79A expands to /projects/compbio/data/pdb/1b79.pdb.gz 1b79A:# 1b79A.440.30 read from T0547.t04.many.frag # adding 1b79A to template set # found chain 1b79A in template set T0547 440 :YLVNFSLFQ 1b79A 40 :LMLDNERWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73708 # 1wgzA.440.401 read from T0547.t04.many.frag # found chain 1wgzA in template set Warning: unaligning (T0547)L441 (1wgzA)G403 because L (left) conformation "forbidden" or filtered. T0547 440 :Y 1wgzA 402 :L T0547 442 :VNFSLFQ 1wgzA 404 :VAPKDYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=73710 # 1ks9A.440.234 read from T0547.t04.many.frag # found chain 1ks9A in training set T0547 440 :YLVNFSLFQ 1ks9A 235 :IDATAENIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=73711 # 1k5nA.440.70 read from T0547.t04.many.frag # found chain 1k5nA in training set T0547 440 :YLVNFSLFQ 1k5nA 71 :AQTDREDLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73712 # 1xhnA.440.134 read from T0547.t04.many.frag # found chain 1xhnA in template set T0547 440 :YLVNFSLFQ 1xhnA 135 :LFIRHPEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73713 # 2bswA.440.19 read from T0547.t04.many.frag # found chain 2bswA in template set T0547 440 :YLVNFSLFQ 2bswA 20 :LRPNQPIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73714 # 1h5uA.440.730 read from T0547.t04.many.frag # found chain 1h5uA in template set T0547 440 :YLVNFSLFQ 1h5uA 731 :YYDRIPELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73715 # 1mpgA.440.141 read from T0547.t04.many.frag # found chain 1mpgA in training set T0547 440 :YLVNFSLFQ 1mpgA 142 :YGERLDDFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=73716 # 2erbA.440.25 read from T0547.t04.many.frag # found chain 2erbA in training set T0547 440 :YLVNFSLFQ 2erbA 26 :CLGKTGVTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73717 # 2ex0A.440.366 read from T0547.t04.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)S445 (2ex0A)G396 because T (delta_L) conformation "forbidden" or filtered. T0547 440 :YLVNF 2ex0A 391 :VMRRL T0547 446 :LFQ 2ex0A 397 :IID Number of specific fragments extracted= 2 number of extra gaps= 1 total=73719 # 1ufyA.440.91 read from T0547.t04.many.frag # found chain 1ufyA in training set T0547 440 :YLVNFSLFQ 1ufyA 92 :ALWNTDTPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73720 # 1zghA.440.174 read from T0547.t04.many.frag # found chain 1zghA in template set Warning: unaligning (T0547)F444 (1zghA)R149 because L (left) conformation "forbidden" or filtered. T0547 440 :YLVN 1zghA 145 :LLTK T0547 445 :SLFQ 1zghA 150 :PVPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=73722 # 1h16A.440.586 read from T0547.t04.many.frag # found chain 1h16A in training set T0547 440 :YLVNFSLFQ 1h16A 587 :KIQKLHTYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73723 # 1pq1A.441.98 read from T0547.t04.many.frag # found chain 1pq1A in training set Warning: unaligning (T0547)S449 (1pq1A)D107 because L (left) conformation "forbidden" or filtered. T0547 441 :LVNFSLFQ 1pq1A 99 :LRYRRAFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=73724 # 2fckA.441.31 read from T0547.t04.many.frag # found chain 2fckA in training set T0547 441 :LVNFSLFQS 2fckA 29 :IRQSQTLHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73725 # 1vp6A.441.12 read from T0547.t04.many.frag # found chain 1vp6A in training set T0547 441 :LVNFSLFQS 1vp6A 230 :VAAVPLFQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73726 # 1y6zA.441.80 read from T0547.t04.many.frag # found chain 1y6zA in template set T0547 441 :LVNFSLFQS 1y6zA 79 :FINDKFSES Number of specific fragments extracted= 1 number of extra gaps= 0 total=73727 # 1efdN.441.229 read from T0547.t04.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)Q448 (1efdN)Q267 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1efdN)R268 because P (beta_P) conformation "forbidden" or filtered. T0547 441 :LVNFSLF 1efdN 260 :FVRAGRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=73728 # 2a1rA.441.327 read from T0547.t04.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)S445 (2a1rA)Q332 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L446 (2a1rA)P333 because C (cis) conformation "forbidden" or filtered. T0547 441 :LVNF 2a1rA 328 :MAST T0547 447 :FQS 2a1rA 334 :FKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=73730 # 1vqoX.441.38 read from T0547.t04.many.frag # found chain 1vqoX in template set Warning: unaligning (T0547)L446 (1vqoX)V43 because Y (epsilon') conformation "forbidden" or filtered. T0547 441 :LVNFS 1vqoX 38 :AKHFS T0547 447 :FQS 1vqoX 44 :DED Number of specific fragments extracted= 2 number of extra gaps= 1 total=73732 # 1b79A.441.31 read from T0547.t04.many.frag # found chain 1b79A in template set T0547 441 :LVNFSLFQS 1b79A 41 :MLDNERWDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73733 # 1ylhA.441.537 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 441 :LVNFSLFQS 1ylhA 518 :VKNFVKYTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73734 # 1vjxA.441.55 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 441 :LVNFSLFQS 1vjxA 44 :RIHAEIFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73735 # 1kwgA.441.163 read from T0547.t04.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)S445 (1kwgA)G168 because T (delta_L) conformation "forbidden" or filtered. T0547 441 :LVNF 1kwgA 164 :EARY T0547 446 :LFQS 1kwgA 169 :TIEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=73737 # 1tzlA.441.205 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)L441 (1tzlA)Q207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1tzlA)G209 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :V 1tzlA 208 :T T0547 444 :FSLFQS 1tzlA 210 :TDQFKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=73739 # 1mkfA.441.55 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 441 :LVNFSLFQS 1mkfA 56 :SKNLHELQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73740 # 1mc2A.441.93 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 441 :LVNFSLFQS 1mc2A 1104 :ICLRENLDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73741 # 1fc3A.441.36 read from T0547.t04.many.frag # found chain 1fc3A in template set T0547 441 :LVNFSLFQS 1fc3A 176 :YHDIELLGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=73742 1dvoA expands to /projects/compbio/data/pdb/1dvo.pdb.gz 1dvoA:# 1dvoA.441.28 read from T0547.t04.many.frag # adding 1dvoA to template set # found chain 1dvoA in template set T0547 441 :LVNFSLFQS 1dvoA 61 :RQALSIYLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73743 # 1h5uA.441.731 read from T0547.t04.many.frag # found chain 1h5uA in template set Warning: unaligning (T0547)N443 (1h5uA)R734 because G (3-10) conformation "forbidden" or filtered. T0547 441 :LV 1h5uA 732 :YD T0547 444 :FSLFQS 1h5uA 735 :IPELRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=73745 # 2bs3C.441.144 read from T0547.t04.many.frag # found chain 2bs3C in template set T0547 441 :LVNFSLFQS 2bs3C 145 :YIMMTQPQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73746 # 1h16A.441.587 read from T0547.t04.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)Q448 (1h16A)R595 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1h16A)D596 because L (left) conformation "forbidden" or filtered. T0547 441 :LVNFSLF 1h16A 588 :IQKLHTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=73747 # 1k5nA.441.71 read from T0547.t04.many.frag # found chain 1k5nA in training set T0547 441 :LVNFSLFQS 1k5nA 72 :QTDREDLRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73748 # 1xhnA.441.135 read from T0547.t04.many.frag # found chain 1xhnA in template set T0547 441 :LVNFSLFQS 1xhnA 136 :FIRHPEMKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73749 # 1mpgA.441.142 read from T0547.t04.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)N443 (1mpgA)R145 because P (beta_P) conformation "forbidden" or filtered. T0547 441 :LV 1mpgA 143 :GE T0547 444 :FSLFQS 1mpgA 146 :LDDFPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73751 # 1l8bA.441.48 read from T0547.t04.many.frag # found chain 1l8bA in training set T0547 441 :LVNFSLFQS 1l8bA 76 :YNHIQLSSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73752 # 1z5zA.441.234 read from T0547.t04.many.frag # found chain 1z5zA in template set T0547 441 :LVNFSLFQS 1z5zA 870 :AFKRSLFKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73753 # 1ynbA.441.13 read from T0547.t04.many.frag # found chain 1ynbA in training set T0547 441 :LVNFSLFQS 1ynbA 14 :IHEVGSLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73754 # 1svsA.441.251 read from T0547.t04.many.frag # found chain 1svsA in training set T0547 441 :LVNFSLFQS 1svsA 253 :ICNNKWFTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73755 # 1uj8A.441.46 read from T0547.t04.many.frag # found chain 1uj8A in training set T0547 441 :LVNFSLFQS 1uj8A 47 :ICDLEDFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73756 # 1zghA.441.175 read from T0547.t04.many.frag # found chain 1zghA in template set T0547 441 :LVNFSLFQS 1zghA 146 :LTKRPVPQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73757 # 1wehA.441.121 read from T0547.t04.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)N443 (1wehA)R124 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1wehA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1wehA)R129 because Y (epsilon') conformation "forbidden" or filtered. T0547 441 :LV 1wehA 122 :YL T0547 444 :F 1wehA 125 :R T0547 446 :LF 1wehA 127 :VG T0547 449 :S 1wehA 130 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=73761 # 1pa7A.441.28 read from T0547.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)L441 (1pa7A)Q29 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1pa7A)N31 because D (zeta) conformation "forbidden" or filtered. T0547 442 :V 1pa7A 30 :L T0547 444 :FSLFQS 1pa7A 32 :LTKIEQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=73763 # 1pq1A.442.99 read from T0547.t04.many.frag # found chain 1pq1A in training set Warning: unaligning (T0547)F447 (1pq1A)F105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1pq1A)S106 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1pq1A)D107 because L (left) conformation "forbidden" or filtered. T0547 442 :VNFSL 1pq1A 100 :RYRRA T0547 450 :M 1pq1A 108 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=73765 # 1vp6A.442.13 read from T0547.t04.many.frag # found chain 1vp6A in training set T0547 442 :VNFSLFQSM 1vp6A 231 :AAVPLFQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73766 # 2fckA.442.32 read from T0547.t04.many.frag # found chain 2fckA in training set T0547 442 :VNFSLFQSM 2fckA 30 :RQSQTLHQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=73767 # 1y6zA.442.81 read from T0547.t04.many.frag # found chain 1y6zA in template set Warning: unaligning (T0547)S445 (1y6zA)K83 because G (3-10) conformation "forbidden" or filtered. T0547 442 :VNF 1y6zA 80 :IND T0547 446 :LFQSM 1y6zA 84 :FSESI Number of specific fragments extracted= 2 number of extra gaps= 1 total=73769 # 1vjxA.442.56 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 442 :VNFSLFQSM 1vjxA 45 :IHAEIFRKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=73770 # 2a1rA.442.328 read from T0547.t04.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)L446 (2a1rA)P333 because C (cis) conformation "forbidden" or filtered. T0547 442 :VNFS 2a1rA 329 :ASTQ T0547 447 :FQSM 2a1rA 334 :FKDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=73772 # 1efdN.442.230 read from T0547.t04.many.frag # found chain 1efdN in template set T0547 442 :VNFSLFQSM 1efdN 261 :VRAGRFQRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73773 # 1b79A.442.32 read from T0547.t04.many.frag # found chain 1b79A in template set T0547 442 :VNFSLFQSM 1b79A 42 :LDNERWDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73774 # 1mkfA.442.56 read from T0547.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)N443 (1mkfA)N58 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (1mkfA)L65 because G (3-10) conformation "forbidden" or filtered. T0547 442 :V 1mkfA 57 :K T0547 444 :FSLFQS 1mkfA 59 :LHELQG Number of specific fragments extracted= 2 number of extra gaps= 2 total=73776 # 1tzlA.442.206 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)N443 (1tzlA)G209 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :V 1tzlA 208 :T T0547 444 :FSLFQSM 1tzlA 210 :TDQFKES Number of specific fragments extracted= 2 number of extra gaps= 1 total=73778 # 1kwgA.442.164 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 442 :VNFSLFQSM 1kwgA 165 :ARYGTIEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73779 # 1ylhA.442.538 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 442 :VNFSLFQSM 1ylhA 519 :KNFVKYTAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73780 # 1dvoA.442.29 read from T0547.t04.many.frag # found chain 1dvoA in template set T0547 442 :VNFSLFQSM 1dvoA 62 :QALSIYLNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73781 # 1vqoX.442.39 read from T0547.t04.many.frag # found chain 1vqoX in template set Warning: unaligning (T0547)L446 (1vqoX)V43 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :VNFS 1vqoX 39 :KHFS T0547 447 :FQSM 1vqoX 44 :DEDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=73783 # 1h5uA.442.732 read from T0547.t04.many.frag # found chain 1h5uA in template set T0547 442 :VNFSLFQSM 1h5uA 733 :DRIPELRQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73784 # 1k5nA.442.72 read from T0547.t04.many.frag # found chain 1k5nA in training set T0547 442 :VNFSLFQSM 1k5nA 73 :TDREDLRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73785 # 1z5zA.442.235 read from T0547.t04.many.frag # found chain 1z5zA in template set T0547 442 :VNFSLFQSM 1z5zA 871 :FKRSLFKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73786 # 1twfB.442.560 read from T0547.t04.many.frag # found chain 1twfB in template set T0547 442 :VNFSLFQSM 1twfB 561 :WGMEPLEDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73787 # 1fc3A.442.37 read from T0547.t04.many.frag # found chain 1fc3A in template set T0547 442 :VNFSLFQSM 1fc3A 177 :HDIELLGSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73788 # 1pa7A.442.29 read from T0547.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)S445 (1pa7A)T33 because G (3-10) conformation "forbidden" or filtered. T0547 442 :VNF 1pa7A 30 :LNL T0547 446 :LFQSM 1pa7A 34 :KIEQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=73790 # 1ynbA.442.14 read from T0547.t04.many.frag # found chain 1ynbA in training set T0547 442 :VNFSLFQSM 1ynbA 15 :HEVGSLKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73791 # 1mpgA.442.143 read from T0547.t04.many.frag # found chain 1mpgA in training set T0547 442 :VNFSLFQSM 1mpgA 144 :ERLDDFPEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73792 # 1l8bA.442.49 read from T0547.t04.many.frag # found chain 1l8bA in training set T0547 442 :VNFSLFQSM 1l8bA 77 :NHIQLSSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73793 # 1n5uA.442.389 read from T0547.t04.many.frag # found chain 1n5uA in template set T0547 442 :VNFSLFQSM 1n5uA 390 :QNCELFEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73794 # 1mc2A.442.94 read from T0547.t04.many.frag # found chain 1mc2A in training set T0547 442 :VNFSLFQSM 1mc2A 1105 :CLRENLDTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73795 # 2bs3C.442.145 read from T0547.t04.many.frag # found chain 2bs3C in template set T0547 442 :VNFSLFQSM 2bs3C 146 :IMMTQPQTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73796 2eulA expands to /projects/compbio/data/pdb/2eul.pdb.gz 2eulA:# 2eulA.442.59 read from T0547.t04.many.frag # adding 2eulA to template set # found chain 2eulA in template set T0547 442 :VNFSLFQSM 2eulA 60 :ARIDSLEDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73797 # 1t98A.442.137 read from T0547.t04.many.frag # found chain 1t98A in template set T0547 442 :VNFSLFQSM 1t98A 138 :RAADAAEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73798 1svb expands to /projects/compbio/data/pdb/1svb.pdb.gz 1svb:Warning: there is no chain 1svb will retry with 1svbA # 1svb.442.214 read from T0547.t04.many.frag # adding 1svb to template set # found chain 1svb in template set T0547 442 :VNFSLFQSM 1svb 215 :VHRDWFNDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73799 # 2anuA.442.168 read from T0547.t04.many.frag # found chain 2anuA in template set T0547 442 :VNFSLFQSM 2anuA 157 :ANMERFKDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73800 # 1pq1A.443.100 read from T0547.t04.many.frag # found chain 1pq1A in training set T0547 443 :NFSLFQSMP 1pq1A 101 :YRRAFSDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73801 # 1y6zA.443.82 read from T0547.t04.many.frag # found chain 1y6zA in template set Warning: unaligning (T0547)N443 (1y6zA)N81 because E (beta_S) conformation "forbidden" or filtered. T0547 444 :FSLFQSMP 1y6zA 82 :DKFSESIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=73802 # 1vp6A.443.14 read from T0547.t04.many.frag # found chain 1vp6A in training set T0547 443 :NFSLFQSMP 1vp6A 232 :AVPLFQKLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73803 # 2fckA.443.33 read from T0547.t04.many.frag # found chain 2fckA in training set T0547 443 :NFSLFQSMP 2fckA 31 :QSQTLHQWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73804 # 1vjxA.443.57 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 443 :NFSLFQSMP 1vjxA 46 :HAEIFRKMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=73805 # 1b79A.443.33 read from T0547.t04.many.frag # found chain 1b79A in template set T0547 443 :NFSLFQSMP 1b79A 43 :DNERWDDVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73806 # 2a1rA.443.329 read from T0547.t04.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)L446 (2a1rA)P333 because C (cis) conformation "forbidden" or filtered. T0547 443 :NFS 2a1rA 330 :STQ T0547 447 :FQSMP 2a1rA 334 :FKDII Number of specific fragments extracted= 2 number of extra gaps= 1 total=73808 # 1tzlA.443.207 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)N443 (1tzlA)G209 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (1tzlA)S216 because P (beta_P) conformation "forbidden" or filtered. T0547 444 :FSLFQS 1tzlA 210 :TDQFKE T0547 451 :P 1tzlA 217 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=73810 # 1kwgA.443.165 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 443 :NFSLFQSMP 1kwgA 166 :RYGTIEALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73811 # 1dvoA.443.30 read from T0547.t04.many.frag # found chain 1dvoA in template set T0547 443 :NFSLFQSMP 1dvoA 63 :ALSIYLNLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=73812 # 1mkfA.443.57 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 443 :NFSLFQSMP 1mkfA 58 :NLHELQGLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=73813 # 1efdN.443.231 read from T0547.t04.many.frag # found chain 1efdN in template set T0547 443 :NFSLFQSMP 1efdN 262 :RAGRFQRVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=73814 # 1ylhA.443.539 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 443 :NFSLFQSMP 1ylhA 520 :NFVKYTANP Number of specific fragments extracted= 1 number of extra gaps= 0 total=73815 # 1twfB.443.561 read from T0547.t04.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)N443 (1twfB)G562 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1twfB)D568 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1twfB)V570 because D (zeta) conformation "forbidden" or filtered. T0547 444 :FSLFQ 1twfB 563 :MEPLE T0547 450 :M 1twfB 569 :Y Number of specific fragments extracted= 2 number of extra gaps= 3 total=73817 # 1z5zA.443.236 read from T0547.t04.many.frag # found chain 1z5zA in template set T0547 443 :NFSLFQSMP 1z5zA 872 :KRSLFKDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=73818 # 1h5uA.443.733 read from T0547.t04.many.frag # found chain 1h5uA in template set T0547 443 :NFSLFQSMP 1h5uA 734 :RIPELRQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=73819 # 1k5nA.443.73 read from T0547.t04.many.frag # found chain 1k5nA in training set T0547 443 :NFSLFQSMP 1k5nA 74 :DREDLRTLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73820 # 1l8bA.443.50 read from T0547.t04.many.frag # found chain 1l8bA in training set T0547 443 :NFSLFQSMP 1l8bA 78 :HIQLSSNLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=73821 # 1wdpA.443.227 read from T0547.t04.many.frag # found chain 1wdpA in training set T0547 443 :NFSLFQSMP 1wdpA 228 :EWELPDDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73822 # 1vqoX.443.40 read from T0547.t04.many.frag # found chain 1vqoX in template set Warning: unaligning (T0547)L446 (1vqoX)V43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (1vqoX)A47 because G (3-10) conformation "forbidden" or filtered. T0547 443 :NFS 1vqoX 40 :HFS T0547 447 :FQS 1vqoX 44 :DED T0547 451 :P 1vqoX 48 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=73825 # 1pa7A.443.30 read from T0547.t04.many.frag # found chain 1pa7A in training set T0547 443 :NFSLFQSMP 1pa7A 31 :NLTKIEQLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=73826 # 1v30A.443.64 read from T0547.t04.many.frag # found chain 1v30A in training set Warning: unaligning (T0547)P451 (1v30A)N73 because G (3-10) conformation "forbidden" or filtered. T0547 443 :NFSLFQSM 1v30A 65 :DKETFERI Number of specific fragments extracted= 1 number of extra gaps= 1 total=73827 # 1ynbA.443.15 read from T0547.t04.many.frag # found chain 1ynbA in training set T0547 443 :NFSLFQSMP 1ynbA 16 :EVGSLKLTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=73828 # 2bswA.443.22 read from T0547.t04.many.frag # found chain 2bswA in template set Warning: unaligning (T0547)N443 (2bswA)N23 because G (3-10) conformation "forbidden" or filtered. T0547 444 :FSLFQSMP 2bswA 24 :QPIEACMF Number of specific fragments extracted= 1 number of extra gaps= 1 total=73829 # 1fc3A.443.38 read from T0547.t04.many.frag # found chain 1fc3A in template set T0547 443 :NFSLFQSMP 1fc3A 178 :DIELLGSIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73830 # 2eulA.443.60 read from T0547.t04.many.frag # found chain 2eulA in template set T0547 443 :NFSLFQSMP 2eulA 61 :RIDSLEDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73831 # 1t3tA.443.146 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)N443 (1t3tA)V139 because E (beta_S) conformation "forbidden" or filtered. T0547 444 :FSLFQSMP 1t3tA 140 :FSSLTDAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=73832 # 2bs3C.443.146 read from T0547.t04.many.frag # found chain 2bs3C in template set Warning: unaligning (T0547)Q448 (2bs3C)Q152 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (2bs3C)G155 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NFSLF 2bs3C 147 :MMTQP T0547 449 :SM 2bs3C 153 :TI Number of specific fragments extracted= 2 number of extra gaps= 2 total=73834 # 1ve2A.443.195 read from T0547.t04.many.frag # found chain 1ve2A in training set Warning: unaligning (T0547)S445 (1ve2A)G198 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NF 1ve2A 196 :RL T0547 446 :LFQSMP 1ve2A 199 :RVEDLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=73836 # 1n5uA.443.390 read from T0547.t04.many.frag # found chain 1n5uA in template set Warning: unaligning (T0547)P451 (1n5uA)G399 because S (epsilon) conformation "forbidden" or filtered. T0547 443 :NFSLFQSM 1n5uA 391 :NCELFEQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=73837 # 1pq1A.444.101 read from T0547.t04.many.frag # found chain 1pq1A in training set Warning: unaligning (T0547)F447 (1pq1A)F105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1pq1A)D107 because L (left) conformation "forbidden" or filtered. T0547 444 :FSL 1pq1A 102 :RRA T0547 448 :Q 1pq1A 106 :S T0547 450 :MPD 1pq1A 108 :LTS Number of specific fragments extracted= 3 number of extra gaps= 2 total=73840 # 1y6zA.444.83 read from T0547.t04.many.frag # found chain 1y6zA in template set T0547 444 :FSLFQSMPD 1y6zA 82 :DKFSESIPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73841 # 1vp6A.444.15 read from T0547.t04.many.frag # found chain 1vp6A in training set T0547 444 :FSLFQSMPD 1vp6A 233 :VPLFQKLGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=73842 # 2fckA.444.34 read from T0547.t04.many.frag # found chain 2fckA in training set T0547 444 :FSLFQSMPD 2fckA 32 :SQTLHQWVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73843 # 1vjxA.444.58 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 444 :FSLFQSMPD 1vjxA 47 :AEIFRKMSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73844 # 1b79A.444.34 read from T0547.t04.many.frag # found chain 1b79A in template set T0547 444 :FSLFQSMPD 1b79A 44 :NERWDDVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73845 # 2a1rA.444.330 read from T0547.t04.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)L446 (2a1rA)P333 because C (cis) conformation "forbidden" or filtered. T0547 444 :FS 2a1rA 331 :TQ T0547 447 :FQSMPD 2a1rA 334 :FKDIIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=73847 # 1dvoA.444.31 read from T0547.t04.many.frag # found chain 1dvoA in template set Warning: unaligning (T0547)D452 (1dvoA)T72 because P (beta_P) conformation "forbidden" or filtered. T0547 444 :FSLFQSMP 1dvoA 64 :LSIYLNLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=73848 # 1tzlA.444.208 read from T0547.t04.many.frag # found chain 1tzlA in template set T0547 444 :FSLFQSMPD 1tzlA 210 :TDQFKESIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73849 # 1kwgA.444.166 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 444 :FSLFQSMPD 1kwgA 167 :YGTIEALNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73850 # 1twfB.444.562 read from T0547.t04.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)S445 (1twfB)E564 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1twfB)V570 because D (zeta) conformation "forbidden" or filtered. T0547 444 :F 1twfB 563 :M T0547 446 :LFQSM 1twfB 565 :PLEDY T0547 452 :D 1twfB 571 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=73853 # 1mkfA.444.58 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 444 :FSLFQSMPD 1mkfA 59 :LHELQGLCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73854 # 1wdpA.444.228 read from T0547.t04.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)S449 (1wdpA)D234 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (1wdpA)A235 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1wdpA)G236 because S (epsilon) conformation "forbidden" or filtered. T0547 444 :FSLFQ 1wdpA 229 :WELPD T0547 452 :D 1wdpA 237 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=73856 # 1ylhA.444.540 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 444 :FSLFQSMPD 1ylhA 521 :FVKYTANPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73857 # 1h5uA.444.734 read from T0547.t04.many.frag # found chain 1h5uA in template set T0547 444 :FSLFQSMPD 1h5uA 735 :IPELRQIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73858 # 1z5zA.444.237 read from T0547.t04.many.frag # found chain 1z5zA in template set T0547 444 :FSLFQSMPD 1z5zA 873 :RSLFKDIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=73859 # 2eulA.444.61 read from T0547.t04.many.frag # found chain 2eulA in template set T0547 444 :FSLFQSMPD 2eulA 62 :IDSLEDILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=73860 # 1efdN.444.232 read from T0547.t04.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)S445 (1efdN)G264 because L (left) conformation "forbidden" or filtered. T0547 444 :F 1efdN 263 :A T0547 446 :LFQSMPD 1efdN 265 :RFQRVPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=73862 # 1pa7A.444.31 read from T0547.t04.many.frag # found chain 1pa7A in training set T0547 444 :FSLFQSMPD 1pa7A 32 :LTKIEQLCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=73863 # 1ve2A.444.196 read from T0547.t04.many.frag # found chain 1ve2A in training set Warning: unaligning (T0547)S445 (1ve2A)G198 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :F 1ve2A 197 :L T0547 446 :LFQSMPD 1ve2A 199 :RVEDLPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=73865 # 1v30A.444.65 read from T0547.t04.many.frag # found chain 1v30A in training set Warning: unaligning (T0547)P451 (1v30A)N73 because G (3-10) conformation "forbidden" or filtered. T0547 444 :FSLFQSM 1v30A 66 :KETFERI T0547 452 :D 1v30A 74 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=73867 # 1k5nA.444.74 read from T0547.t04.many.frag # found chain 1k5nA in training set T0547 444 :FSLFQSMPD 1k5nA 75 :REDLRTLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73868 # 1t3tA.444.147 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 444 :FSLFQSMPD 1t3tA 140 :FSSLTDAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73869 # 1l8bA.444.51 read from T0547.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)S445 (1l8bA)Q80 because P (beta_P) conformation "forbidden" or filtered. T0547 444 :F 1l8bA 79 :I T0547 446 :LFQSMPD 1l8bA 81 :LSSNLMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=73871 # 1ydiA.444.139 read from T0547.t04.many.frag # found chain 1ydiA in training set T0547 444 :FSLFQSMPD 1ydiA 135 :IRVCKGILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73872 # 1h0hB.444.103 read from T0547.t04.many.frag # found chain 1h0hB in training set T0547 444 :FSLFQSMPD 1h0hB 104 :TPKTKDLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=73873 # 1fc3A.444.39 read from T0547.t04.many.frag # found chain 1fc3A in template set T0547 444 :FSLFQSMPD 1fc3A 179 :IELLGSITK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73874 # 1m40A.444.188 read from T0547.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)S445 (1m40A)K215 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (1m40A)L220 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :F 1m40A 214 :D T0547 446 :LFQS 1m40A 216 :VAGP T0547 451 :PD 1m40A 221 :LR Number of specific fragments extracted= 3 number of extra gaps= 2 total=73877 # 2anuA.444.170 read from T0547.t04.many.frag # found chain 2anuA in template set T0547 444 :FSLFQSMPD 2anuA 159 :MERFKDTFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73878 # 1ynbA.444.16 read from T0547.t04.many.frag # found chain 1ynbA in training set Warning: unaligning (T0547)S449 (1ynbA)L22 because G (3-10) conformation "forbidden" or filtered. T0547 444 :FSLFQ 1ynbA 17 :VGSLK T0547 450 :MPD 1ynbA 23 :TPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=73880 # 1y6zA.445.84 read from T0547.t04.many.frag # found chain 1y6zA in template set T0547 445 :SLFQSMPDF 1y6zA 83 :KFSESIPRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=73881 # 1pq1A.445.102 read from T0547.t04.many.frag # found chain 1pq1A in training set Warning: unaligning (T0547)S449 (1pq1A)D107 because L (left) conformation "forbidden" or filtered. T0547 445 :SLFQ 1pq1A 103 :RAFS T0547 450 :MPDF 1pq1A 108 :LTSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=73883 # 1b79A.445.35 read from T0547.t04.many.frag # found chain 1b79A in template set T0547 445 :SLFQSMPDF 1b79A 45 :ERWDDVAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=73884 # 1vp6A.445.16 read from T0547.t04.many.frag # found chain 1vp6A in training set T0547 445 :SLFQSMPDF 1vp6A 234 :PLFQKLGPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73885 # 2fckA.445.35 read from T0547.t04.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)F453 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fckA)F46 T0547 445 :SLFQSMPD 2fckA 33 :QTLHQWVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73886 # 1dvoA.445.32 read from T0547.t04.many.frag # found chain 1dvoA in template set T0547 445 :SLFQSMPDF 1dvoA 65 :SIYLNLPTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73887 # 1vjxA.445.59 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 445 :SLFQSMPDF 1vjxA 48 :EIFRKMSDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73888 # 1tzlA.445.209 read from T0547.t04.many.frag # found chain 1tzlA in template set T0547 445 :SLFQSMPDF 1tzlA 211 :DQFKESIRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=73889 # 1kwgA.445.167 read from T0547.t04.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)S445 (1kwgA)G168 because T (delta_L) conformation "forbidden" or filtered. T0547 446 :LFQSMPDF 1kwgA 169 :TIEALNEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=73890 # 1twfB.445.563 read from T0547.t04.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)P451 (1twfB)V570 because D (zeta) conformation "forbidden" or filtered. T0547 445 :SLFQSM 1twfB 564 :EPLEDY T0547 452 :DF 1twfB 571 :PH Number of specific fragments extracted= 2 number of extra gaps= 1 total=73892 # 1wdpA.445.229 read from T0547.t04.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)P451 (1wdpA)G236 because S (epsilon) conformation "forbidden" or filtered. T0547 445 :SLFQSM 1wdpA 230 :ELPDDA T0547 452 :DF 1wdpA 237 :KY Number of specific fragments extracted= 2 number of extra gaps= 1 total=73894 # 1h0hB.445.104 read from T0547.t04.many.frag # found chain 1h0hB in training set T0547 445 :SLFQSMPDF 1h0hB 105 :PKTKDLEDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73895 # 2a1rA.445.331 read from T0547.t04.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)L446 (2a1rA)P333 because C (cis) conformation "forbidden" or filtered. T0547 445 :S 2a1rA 332 :Q T0547 447 :FQSMPDF 2a1rA 334 :FKDIINN Number of specific fragments extracted= 2 number of extra gaps= 1 total=73897 # 1ve2A.445.197 read from T0547.t04.many.frag # found chain 1ve2A in training set Warning: unaligning (T0547)S445 (1ve2A)G198 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1ve2A)P204 because C (cis) conformation "forbidden" or filtered. T0547 446 :LFQSM 1ve2A 199 :RVEDL T0547 452 :DF 1ve2A 205 :GL Number of specific fragments extracted= 2 number of extra gaps= 2 total=73899 # 1mkfA.445.59 read from T0547.t04.many.frag # found chain 1mkfA in template set T0547 445 :SLFQSMPDF 1mkfA 60 :HELQGLCNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73900 # 1ylhA.445.541 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 445 :SLFQSMPDF 1ylhA 522 :VKYTANPEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73901 # 1ydiA.445.140 read from T0547.t04.many.frag # found chain 1ydiA in training set T0547 445 :SLFQSMPDF 1ydiA 136 :RVCKGILEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73902 # 1v30A.445.66 read from T0547.t04.many.frag # found chain 1v30A in training set Warning: unaligning (T0547)P451 (1v30A)N73 because G (3-10) conformation "forbidden" or filtered. T0547 445 :SLFQSM 1v30A 67 :ETFERI T0547 452 :DF 1v30A 74 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=73904 # 1pa7A.445.32 read from T0547.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)F453 (1pa7A)G41 because T (delta_L) conformation "forbidden" or filtered. T0547 445 :SLFQSMPD 1pa7A 33 :TKIEQLCS Number of specific fragments extracted= 1 number of extra gaps= 1 total=73905 # 1h5uA.445.735 read from T0547.t04.many.frag # found chain 1h5uA in template set T0547 445 :SLFQSMPDF 1h5uA 736 :PELRQIIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=73906 # 1l8bA.445.52 read from T0547.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)F453 (1l8bA)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 445 :SLFQSMPD 1l8bA 80 :QLSSNLMP Number of specific fragments extracted= 1 number of extra gaps= 1 total=73907 # 1t3tA.445.148 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 445 :SLFQSMPDF 1t3tA 141 :SSLTDAEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73908 # 2eulA.445.62 read from T0547.t04.many.frag # found chain 2eulA in template set T0547 445 :SLFQSMPDF 2eulA 63 :DSLEDILSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73909 1yk4A expands to /projects/compbio/data/pdb/1yk4.pdb.gz 1yk4A:Skipped atom 15, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 19, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 21, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 23, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 25, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 27, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 77, because occupancy 0.130 <= existing 0.610 in 1yk4A Skipped atom 78, because occupancy 0.260 <= existing 0.610 in 1yk4A Skipped atom 80, because occupancy 0.130 <= existing 0.610 in 1yk4A Skipped atom 81, because occupancy 0.260 <= existing 0.610 in 1yk4A Skipped atom 106, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 108, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 128, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 130, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 132, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 134, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 136, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 138, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 140, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 142, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 166, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 323, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 325, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 327, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 398, because occupancy 0.360 <= existing 0.590 in 1yk4A Skipped atom 399, because occupancy 0.060 <= existing 0.590 in 1yk4A Skipped atom 401, because occupancy 0.360 <= existing 0.590 in 1yk4A Skipped atom 402, because occupancy 0.060 <= existing 0.590 in 1yk4A Skipped atom 565, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 567, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 569, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 571, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 573, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 575, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 577, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 579, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 589, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 591, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 593, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 595, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 597, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 599, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 601, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 603, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 613, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 666, because occupancy 0.340 <= existing 0.660 in 1yk4A Skipped atom 670, because occupancy 0.340 <= existing 0.660 in 1yk4A Skipped atom 672, because occupancy 0.340 <= existing 0.660 in 1yk4A Skipped atom 674, because occupancy 0.340 <= existing 0.660 in 1yk4A Skipped atom 822, because occupancy 0.390 <= existing 0.610 in 1yk4A Skipped atom 824, because occupancy 0.390 <= existing 0.610 in 1yk4A Skipped atom 826, because occupancy 0.390 <= existing 0.610 in 1yk4A Skipped atom 828, because occupancy 0.390 <= existing 0.610 in 1yk4A Skipped atom 830, because occupancy 0.390 <= existing 0.610 in 1yk4A Skipped atom 843, because occupancy 0.260 <= existing 0.740 in 1yk4A Skipped atom 847, because occupancy 0.260 <= existing 0.740 in 1yk4A Skipped atom 849, because occupancy 0.260 <= existing 0.740 in 1yk4A Skipped atom 851, because occupancy 0.260 <= existing 0.740 in 1yk4A Skipped atom 853, because occupancy 0.260 <= existing 0.740 in 1yk4A Skipped atom 855, because occupancy 0.260 <= existing 0.740 in 1yk4A Skipped atom 857, because occupancy 0.260 <= existing 0.740 in 1yk4A Skipped atom 859, because occupancy 0.260 <= existing 0.740 in 1yk4A # 1yk4A.445.26 read from T0547.t04.many.frag # adding 1yk4A to template set # found chain 1yk4A in template set T0547 445 :SLFQSMPDF 1yk4A 28 :TKFEDLPDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73910 2cwkA expands to /projects/compbio/data/pdb/2cwk.pdb.gz 2cwkA:# 2cwkA.445.96 read from T0547.t04.many.frag # adding 2cwkA to template set # found chain 2cwkA in template set T0547 445 :SLFQSMPDF 2cwkA 97 :TDPKDAAPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73911 # 1m40A.445.189 read from T0547.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)M450 (1m40A)L220 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLFQS 1m40A 215 :KVAGP T0547 451 :PDF 1m40A 221 :LRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=73913 # 1efdN.445.233 read from T0547.t04.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)S445 (1efdN)G264 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1efdN)Q267 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (1efdN)A271 because P (beta_P) conformation "forbidden" or filtered. T0547 446 :LF 1efdN 265 :RF T0547 449 :SMP 1efdN 268 :RVP T0547 453 :F 1efdN 272 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=73916 1ztdA expands to /projects/compbio/data/pdb/1ztd.pdb.gz 1ztdA:# 1ztdA.445.55 read from T0547.t04.many.frag # adding 1ztdA to template set # found chain 1ztdA in template set Warning: unaligning (T0547)M450 (1ztdA)L53 because P (beta_P) conformation "forbidden" or filtered. T0547 445 :SLFQS 1ztdA 48 :GLSKN T0547 451 :PDF 1ztdA 54 :RRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=73918 # 1fc3A.445.40 read from T0547.t04.many.frag # found chain 1fc3A in template set T0547 445 :SLFQSMPDF 1fc3A 180 :ELLGSITKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73919 # 1k5nA.445.75 read from T0547.t04.many.frag # found chain 1k5nA in training set T0547 445 :SLFQSMPDF 1k5nA 76 :EDLRTLLRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=73920 # 1y6zA.446.85 read from T0547.t04.many.frag # found chain 1y6zA in template set T0547 446 :LFQSMPDFW 1y6zA 84 :FSESIPRWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73921 # 1pq1A.446.103 read from T0547.t04.many.frag # found chain 1pq1A in training set Warning: unaligning (T0547)S449 (1pq1A)D107 because L (left) conformation "forbidden" or filtered. T0547 446 :LFQ 1pq1A 104 :AFS T0547 450 :MPDFW 1pq1A 108 :LTSQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=73923 # 1dvoA.446.33 read from T0547.t04.many.frag # found chain 1dvoA in template set T0547 446 :LFQSMPDFW 1dvoA 66 :IYLNLPTLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73924 # 1b79A.446.36 read from T0547.t04.many.frag # found chain 1b79A in template set Warning: unaligning (T0547)F453 (1b79A)R53 because G (3-10) conformation "forbidden" or filtered. T0547 446 :LFQSMPD 1b79A 46 :RWDDVAE T0547 454 :W 1b79A 54 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=73926 # 1vjxA.446.60 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 446 :LFQSMPDFW 1vjxA 49 :IFRKMSDQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73927 # 1wdpA.446.230 read from T0547.t04.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)D452 (1wdpA)K237 because E (beta_S) conformation "forbidden" or filtered. T0547 446 :LFQSMP 1wdpA 231 :LPDDAG T0547 453 :FW 1wdpA 238 :YN Number of specific fragments extracted= 2 number of extra gaps= 1 total=73929 # 2a1rA.446.332 read from T0547.t04.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)L446 (2a1rA)P333 because C (cis) conformation "forbidden" or filtered. T0547 447 :FQSMPDFW 2a1rA 334 :FKDIINNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=73930 # 2fckA.446.36 read from T0547.t04.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)F453 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fckA)F46 T0547 446 :LFQSMPD 2fckA 34 :TLHQWVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73931 # 1h0hB.446.105 read from T0547.t04.many.frag # found chain 1h0hB in training set Warning: unaligning (T0547)M450 (1h0hB)L110 because P (beta_P) conformation "forbidden" or filtered. T0547 446 :LFQS 1h0hB 106 :KTKD T0547 451 :PDFW 1h0hB 111 :EDYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73933 # 1tzlA.446.210 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)F447 (1tzlA)F213 because G (3-10) conformation "forbidden" or filtered. T0547 446 :L 1tzlA 212 :Q T0547 448 :QSMPDFW 1tzlA 214 :KESIRHN Number of specific fragments extracted= 2 number of extra gaps= 1 total=73935 # 1ylhA.446.542 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 446 :LFQSMPDFW 1ylhA 523 :KYTANPEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=73936 # 1kwgA.446.168 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 446 :LFQSMPDFW 1kwgA 169 :TIEALNEAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=73937 # 2cwkA.446.97 read from T0547.t04.many.frag # found chain 2cwkA in template set T0547 446 :LFQSMPDFW 2cwkA 98 :DPKDAAPGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73938 # 1yk4A.446.27 read from T0547.t04.many.frag # found chain 1yk4A in template set T0547 446 :LFQSMPDFW 1yk4A 29 :KFEDLPDDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=73939 # 1ydiA.446.141 read from T0547.t04.many.frag # found chain 1ydiA in training set T0547 446 :LFQSMPDFW 1ydiA 137 :VCKGILEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73940 # 1t3tA.446.149 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)W454 (1t3tA)F150 because G (3-10) conformation "forbidden" or filtered. T0547 446 :LFQSMPDF 1t3tA 142 :SLTDAEKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=73941 # 1twfB.446.564 read from T0547.t04.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)P451 (1twfB)V570 because D (zeta) conformation "forbidden" or filtered. T0547 446 :LFQSM 1twfB 565 :PLEDY T0547 452 :DFW 1twfB 571 :PHQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=73943 # 1h5uA.446.736 read from T0547.t04.many.frag # found chain 1h5uA in template set T0547 446 :LFQSMPDFW 1h5uA 737 :ELRQIIEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73944 # 1vp6A.446.17 read from T0547.t04.many.frag # found chain 1vp6A in training set T0547 446 :LFQSMPDFW 1vp6A 235 :LFQKLGPAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73945 # 1l8bA.446.53 read from T0547.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)F453 (1l8bA)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 446 :LFQSMPD 1l8bA 81 :LSSNLMP T0547 454 :W 1l8bA 89 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=73947 # 1ve2A.446.198 read from T0547.t04.many.frag # found chain 1ve2A in training set Warning: unaligning (T0547)P451 (1ve2A)P204 because C (cis) conformation "forbidden" or filtered. T0547 446 :LFQSM 1ve2A 199 :RVEDL T0547 452 :DFW 1ve2A 205 :GLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=73949 # 1pa7A.446.33 read from T0547.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)F453 (1pa7A)G41 because T (delta_L) conformation "forbidden" or filtered. T0547 446 :LFQSMPD 1pa7A 34 :KIEQLCS T0547 454 :W 1pa7A 42 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=73951 # 1m40A.446.190 read from T0547.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)M450 (1m40A)L220 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LFQS 1m40A 216 :VAGP T0547 451 :PDFW 1m40A 221 :LRSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=73953 # 1e2kA.446.238 read from T0547.t04.many.frag # found chain 1e2kA in training set T0547 446 :LFQSMPDFW 1e2kA 284 :IGDTLFTLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=73954 # 1t3tA.446.146 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 446 :LFQSMPDFW 1t3tA 139 :VFSSLTDAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73955 1uzeA expands to /projects/compbio/data/pdb/1uze.pdb.gz 1uzeA:# 1uzeA.446.245 read from T0547.t04.many.frag # adding 1uzeA to template set # found chain 1uzeA in template set T0547 446 :LFQSMPDFW 1uzeA 282 :TWSNIYDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73956 # 1on3A.446.484 read from T0547.t04.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)P451 (1on3A)I491 because E (beta_S) conformation "forbidden" or filtered. T0547 446 :LFQSM 1on3A 486 :QVDDV T0547 452 :DFW 1on3A 492 :DPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=73958 # 1ztdA.446.56 read from T0547.t04.many.frag # found chain 1ztdA in template set T0547 446 :LFQSMPDFW 1ztdA 49 :LSKNLRRVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73959 # 1v30A.446.67 read from T0547.t04.many.frag # found chain 1v30A in training set Warning: unaligning (T0547)P451 (1v30A)N73 because G (3-10) conformation "forbidden" or filtered. T0547 446 :LFQSM 1v30A 68 :TFERI T0547 452 :DFW 1v30A 74 :EIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73961 # 2eulA.446.63 read from T0547.t04.many.frag # found chain 2eulA in template set Warning: unaligning (T0547)F453 (2eulA)R71 because G (3-10) conformation "forbidden" or filtered. T0547 446 :LFQSMPD 2eulA 64 :SLEDILS T0547 454 :W 2eulA 72 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=73963 # 1y6zA.447.86 read from T0547.t04.many.frag # found chain 1y6zA in template set Warning: unaligning (T0547)M450 (1y6zA)I88 because P (beta_P) conformation "forbidden" or filtered. T0547 447 :FQS 1y6zA 85 :SES T0547 451 :PDFWG 1y6zA 89 :PRWLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=73965 # 1pq1A.447.104 read from T0547.t04.many.frag # found chain 1pq1A in training set Warning: unaligning (T0547)S449 (1pq1A)D107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)W454 (1pq1A)L112 because G (3-10) conformation "forbidden" or filtered. T0547 447 :FQ 1pq1A 105 :FS T0547 450 :MPDF 1pq1A 108 :LTSQ T0547 455 :G 1pq1A 113 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=73968 # 1dvoA.447.34 read from T0547.t04.many.frag # found chain 1dvoA in template set T0547 447 :FQSMPDFWG 1dvoA 67 :YLNLPTLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=73969 # 1h0hB.447.106 read from T0547.t04.many.frag # found chain 1h0hB in training set T0547 447 :FQSMPDFWG 1h0hB 107 :TKDLEDYES Number of specific fragments extracted= 1 number of extra gaps= 0 total=73970 # 1b79A.447.37 read from T0547.t04.many.frag # found chain 1b79A in template set T0547 447 :FQSMPDFWG 1b79A 47 :WDDVAERVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=73971 # 1vjxA.447.61 read from T0547.t04.many.frag # found chain 1vjxA in template set T0547 447 :FQSMPDFWG 1vjxA 50 :FRKMSDQEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=73972 # 1wdpA.447.231 read from T0547.t04.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)P451 (1wdpA)G236 because S (epsilon) conformation "forbidden" or filtered. T0547 447 :FQSM 1wdpA 232 :PDDA T0547 452 :DFWG 1wdpA 237 :KYND Number of specific fragments extracted= 2 number of extra gaps= 1 total=73974 # 1yk4A.447.28 read from T0547.t04.many.frag # found chain 1yk4A in template set Warning: unaligning (T0547)G455 (1yk4A)V38 because E (beta_S) conformation "forbidden" or filtered. T0547 447 :FQSMPDFW 1yk4A 30 :FEDLPDDW Number of specific fragments extracted= 1 number of extra gaps= 1 total=73975 # 1kwgA.447.169 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 447 :FQSMPDFWG 1kwgA 170 :IEALNEAWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=73976 # 1ylhA.447.543 read from T0547.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)M450 (1ylhA)N527 because P (beta_P) conformation "forbidden" or filtered. T0547 447 :FQS 1ylhA 524 :YTA T0547 451 :PDFWG 1ylhA 528 :PEAAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=73978 # 1ydiA.447.142 read from T0547.t04.many.frag # found chain 1ydiA in training set T0547 447 :FQSMPDFWG 1ydiA 138 :CKGILEYLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=73979 # 1uzeA.447.246 read from T0547.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)W454 (1uzeA)V290 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1uzeA)V291 because P (beta_P) conformation "forbidden" or filtered. T0547 447 :FQSMPDF 1uzeA 283 :WSNIYDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=73980 # 1t3tA.447.150 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 447 :FQSMPDFWG 1t3tA 143 :LTDAEKLFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=73981 # 1e2kA.447.239 read from T0547.t04.many.frag # found chain 1e2kA in training set T0547 447 :FQSMPDFWG 1e2kA 285 :GDTLFTLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=73982 # 1m40A.447.191 read from T0547.t04.many.frag # found chain 1m40A in training set T0547 447 :FQSMPDFWG 1m40A 217 :AGPLLRSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73983 # 2cwkA.447.98 read from T0547.t04.many.frag # found chain 2cwkA in template set Warning: unaligning (T0547)M450 (2cwkA)A102 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F453 (2cwkA)G105 because T (delta_L) conformation "forbidden" or filtered. T0547 447 :FQS 2cwkA 99 :PKD T0547 451 :PD 2cwkA 103 :AP T0547 454 :WG 2cwkA 106 :TI Number of specific fragments extracted= 3 number of extra gaps= 2 total=73986 # 2a1rA.447.333 read from T0547.t04.many.frag # found chain 2a1rA in template set T0547 447 :FQSMPDFWG 2a1rA 334 :FKDIINNTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=73987 # 1t3tA.447.147 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 447 :FQSMPDFWG 1t3tA 140 :FSSLTDAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73988 # 1h5uA.447.737 read from T0547.t04.many.frag # found chain 1h5uA in template set T0547 447 :FQSMPDFWG 1h5uA 738 :LRQIIEQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=73989 # 1tzlA.447.211 read from T0547.t04.many.frag # found chain 1tzlA in template set T0547 447 :FQSMPDFWG 1tzlA 213 :FKESIRHNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=73990 # 2fckA.447.37 read from T0547.t04.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)F453 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fckA)F46 T0547 447 :FQSMPD 2fckA 35 :LHQWVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73991 # 1h5uA.447.511 read from T0547.t04.many.frag # found chain 1h5uA in template set T0547 447 :FQSMPDFWG 1h5uA 512 :ISDLDQLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=73992 # 1uzeA.447.465 read from T0547.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)P451 (1uzeA)F506 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1uzeA)A510 because G (3-10) conformation "forbidden" or filtered. T0547 447 :FQSM 1uzeA 502 :TQGD T0547 452 :DFW 1uzeA 507 :DPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=73994 # 1evsA.447.88 read from T0547.t04.many.frag # found chain 1evsA in template set T0547 447 :FQSMPDFWG 1evsA 89 :EQRLPKAQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=73995 # 1ve2A.447.199 read from T0547.t04.many.frag # found chain 1ve2A in training set Warning: unaligning (T0547)M450 (1ve2A)L203 because P (beta_P) conformation "forbidden" or filtered. T0547 447 :FQS 1ve2A 200 :VED T0547 451 :PDFWG 1ve2A 204 :PGLGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=73997 # 1lml.447.330 read from T0547.t04.many.frag # found chain 1lml in template set Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE in next template residue (1lml)P434 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE at template residue (1lml)P434 Warning: unaligning (T0547)G455 (1lml)Q438 because N (gamma') conformation "forbidden" or filtered. T0547 447 :FQS 1lml 430 :HPG T0547 452 :DFW 1lml 435 :PYW Number of specific fragments extracted= 2 number of extra gaps= 2 total=73999 # 1on3A.447.485 read from T0547.t04.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)S449 (1on3A)D489 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1on3A)I491 because E (beta_S) conformation "forbidden" or filtered. T0547 447 :FQ 1on3A 487 :VD T0547 450 :M 1on3A 490 :V T0547 452 :DFWG 1on3A 492 :DPAD Number of specific fragments extracted= 3 number of extra gaps= 2 total=74002 # 1v30A.447.68 read from T0547.t04.many.frag # found chain 1v30A in training set Warning: unaligning (T0547)P451 (1v30A)N73 because G (3-10) conformation "forbidden" or filtered. T0547 447 :FQSM 1v30A 69 :FERI T0547 452 :DFWG 1v30A 74 :EIEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=74004 # 1yt3A.447.199 read from T0547.t04.many.frag # found chain 1yt3A in training set T0547 447 :FQSMPDFWG 1yt3A 200 :WRDITNAWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=74005 # 1l8bA.447.54 read from T0547.t04.many.frag # found chain 1l8bA in training set T0547 447 :FQSMPDFWG 1l8bA 82 :SSNLMPGCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=74006 # 1y6zA.448.87 read from T0547.t04.many.frag # found chain 1y6zA in template set T0547 448 :QSMPDFWGL 1y6zA 86 :ESIPRWLTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=74007 # 1h0hB.448.107 read from T0547.t04.many.frag # found chain 1h0hB in training set T0547 448 :QSMPDFWGL 1h0hB 108 :KDLEDYESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=74008 # 1pq1A.448.105 read from T0547.t04.many.frag # found chain 1pq1A in training set Warning: unaligning (T0547)Q448 (1pq1A)S106 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1pq1A)D107 because L (left) conformation "forbidden" or filtered. T0547 450 :MPDFWGL 1pq1A 108 :LTSQLHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=74009 # 1dvoA.448.35 read from T0547.t04.many.frag # found chain 1dvoA in template set T0547 448 :QSMPDFWGL 1dvoA 68 :LNLPTLDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74010 # 1wdpA.448.232 read from T0547.t04.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)G455 (1wdpA)D240 because P (beta_P) conformation "forbidden" or filtered. T0547 448 :QSMPDFW 1wdpA 233 :DDAGKYN T0547 456 :L 1wdpA 241 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=74012 # 1uzeA.448.466 read from T0547.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)S449 (1uzeA)G504 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1uzeA)F506 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1uzeA)A510 because G (3-10) conformation "forbidden" or filtered. T0547 448 :Q 1uzeA 503 :Q T0547 450 :M 1uzeA 505 :D T0547 452 :DFW 1uzeA 507 :DPG T0547 456 :L 1uzeA 511 :K Number of specific fragments extracted= 4 number of extra gaps= 3 total=74016 # 1m40A.448.192 read from T0547.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)M450 (1m40A)L220 because Y (epsilon') conformation "forbidden" or filtered. T0547 448 :QS 1m40A 218 :GP T0547 451 :PDFWGL 1m40A 221 :LRSALP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74018 # 1ylhA.448.544 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 448 :QSMPDFWGL 1ylhA 525 :TANPEAAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74019 # 1b79A.448.38 read from T0547.t04.many.frag # found chain 1b79A in template set T0547 448 :QSMPDFWGL 1b79A 48 :DDVAERVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74020 # 1e2kA.448.240 read from T0547.t04.many.frag # found chain 1e2kA in training set T0547 448 :QSMPDFWGL 1e2kA 286 :DTLFTLFRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74021 # 1t3tA.448.151 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)W454 (1t3tA)F150 because G (3-10) conformation "forbidden" or filtered. T0547 448 :QSMPDF 1t3tA 144 :TDAEKL T0547 455 :GL 1t3tA 151 :IH Number of specific fragments extracted= 2 number of extra gaps= 1 total=74023 # 1lml.448.331 read from T0547.t04.many.frag # found chain 1lml in template set Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE in next template residue (1lml)P434 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE at template residue (1lml)P434 T0547 448 :QS 1lml 431 :PG T0547 452 :DFWGL 1lml 435 :PYWQY Number of specific fragments extracted= 2 number of extra gaps= 1 total=74025 # 1vjxA.448.62 read from T0547.t04.many.frag # found chain 1vjxA in template set Warning: unaligning (T0547)G455 (1vjxA)N58 because P (beta_P) conformation "forbidden" or filtered. T0547 448 :QSMPDFW 1vjxA 51 :RKMSDQE T0547 456 :L 1vjxA 59 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=74027 # 1uzeA.448.247 read from T0547.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)G455 (1uzeA)V291 because P (beta_P) conformation "forbidden" or filtered. T0547 448 :QSMPDFW 1uzeA 284 :SNIYDLV T0547 456 :L 1uzeA 292 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=74029 # 1t3tA.448.148 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 448 :QSMPDFWGL 1t3tA 141 :SSLTDAEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74030 # 2bswA.448.27 read from T0547.t04.many.frag # found chain 2bswA in template set Warning: unaligning (T0547)G455 (2bswA)L35 because G (3-10) conformation "forbidden" or filtered. T0547 448 :QSMPDFW 2bswA 28 :ACMFESD T0547 456 :L 2bswA 36 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=74032 # 1ydiA.448.143 read from T0547.t04.many.frag # found chain 1ydiA in training set T0547 448 :QSMPDFWGL 1ydiA 139 :KGILEYLTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=74033 # 1kwgA.448.170 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 448 :QSMPDFWGL 1kwgA 171 :EALNEAWGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=74034 # 1yk4A.448.29 read from T0547.t04.many.frag # found chain 1yk4A in template set Warning: unaligning (T0547)G455 (1yk4A)V38 because E (beta_S) conformation "forbidden" or filtered. T0547 448 :QSMPDFW 1yk4A 31 :EDLPDDW T0547 456 :L 1yk4A 39 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=74036 # 1evsA.448.89 read from T0547.t04.many.frag # found chain 1evsA in template set Warning: unaligning (T0547)M450 (1evsA)L92 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (1evsA)K94 because P (beta_P) conformation "forbidden" or filtered. T0547 448 :QS 1evsA 90 :QR T0547 451 :P 1evsA 93 :P T0547 453 :FWGL 1evsA 95 :AQDL Number of specific fragments extracted= 3 number of extra gaps= 2 total=74039 # 1h5uA.448.512 read from T0547.t04.many.frag # found chain 1h5uA in template set T0547 448 :QSMPDFWGL 1h5uA 513 :SDLDQLRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74040 # 1tzlA.448.212 read from T0547.t04.many.frag # found chain 1tzlA in template set T0547 448 :QSMPDFWGL 1tzlA 214 :KESIRHNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=74041 # 1l8bA.448.39 read from T0547.t04.many.frag # found chain 1l8bA in training set T0547 448 :QSMPDFWGL 1l8bA 67 :DTVEDFWAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74042 # 2b4vA.448.321 read from T0547.t04.many.frag # found chain 2b4vA in training set Warning: unaligning (T0547)D452 (2b4vA)H345 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (2b4vA)H348 because G (3-10) conformation "forbidden" or filtered. T0547 448 :QSMP 2b4vA 341 :WSLP T0547 453 :FW 2b4vA 346 :PA T0547 456 :L 2b4vA 349 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=74045 # 1on3A.448.486 read from T0547.t04.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)S449 (1on3A)D489 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1on3A)I491 because E (beta_S) conformation "forbidden" or filtered. T0547 448 :Q 1on3A 488 :D T0547 450 :M 1on3A 490 :V T0547 452 :DFWGL 1on3A 492 :DPADT Number of specific fragments extracted= 3 number of extra gaps= 2 total=74048 # 1dk8A.448.125 read from T0547.t04.many.frag # found chain 1dk8A in training set T0547 448 :QSMPDFWGL 1dk8A 236 :PSFLKSDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=74049 # 2cwkA.448.99 read from T0547.t04.many.frag # found chain 2cwkA in template set T0547 448 :QSMPDFWGL 2cwkA 100 :KDAAPGTIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=74050 # 1ynbA.448.20 read from T0547.t04.many.frag # found chain 1ynbA in training set T0547 448 :QSMPDFWGL 1ynbA 21 :KLTPRSGWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74051 # 1a12A.448.203 read from T0547.t04.many.frag # found chain 1a12A in training set T0547 448 :QSMPDFWGL 1a12A 212 :ANRGGRQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74052 # 1v30A.448.69 read from T0547.t04.many.frag # found chain 1v30A in training set Warning: unaligning (T0547)P451 (1v30A)N73 because G (3-10) conformation "forbidden" or filtered. T0547 448 :QSM 1v30A 70 :ERI T0547 452 :DFWGL 1v30A 74 :EIEIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=74054 # 1y6zA.449.88 read from T0547.t04.many.frag # found chain 1y6zA in template set Warning: unaligning (T0547)W454 (1y6zA)L92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (1y6zA)L95 because P (beta_P) conformation "forbidden" or filtered. T0547 449 :SMPDF 1y6zA 87 :SIPRW T0547 455 :GL 1y6zA 93 :TF Number of specific fragments extracted= 2 number of extra gaps= 2 total=74056 # 1h0hB.449.108 read from T0547.t04.many.frag # found chain 1h0hB in training set T0547 449 :SMPDFWGLE 1h0hB 109 :DLEDYESVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=74057 # 1uzeA.449.467 read from T0547.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)P451 (1uzeA)F506 because D (zeta) conformation "forbidden" or filtered. T0547 449 :SM 1uzeA 504 :GD T0547 452 :DFWGLE 1uzeA 507 :DPGAKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=74059 # 1e2kA.449.241 read from T0547.t04.many.frag # found chain 1e2kA in training set Warning: unaligning (T0547)W454 (1e2kA)F292 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1e2kA)R293 because G (3-10) conformation "forbidden" or filtered. T0547 449 :SMPDF 1e2kA 287 :TLFTL T0547 456 :LE 1e2kA 294 :AP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74061 # 1t3tA.449.152 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)W454 (1t3tA)F150 because G (3-10) conformation "forbidden" or filtered. T0547 449 :SMPDF 1t3tA 145 :DAEKL T0547 455 :GLE 1t3tA 151 :IHH Number of specific fragments extracted= 2 number of extra gaps= 1 total=74063 # 1m40A.449.193 read from T0547.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)M450 (1m40A)L220 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1m40A)L225 because P (beta_P) conformation "forbidden" or filtered. T0547 449 :S 1m40A 219 :P T0547 451 :PDFW 1m40A 221 :LRSA T0547 456 :LE 1m40A 226 :PA Number of specific fragments extracted= 3 number of extra gaps= 2 total=74066 # 1uzeA.449.248 read from T0547.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)M450 (1uzeA)I286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1uzeA)V291 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (1uzeA)F293 because D (zeta) conformation "forbidden" or filtered. T0547 449 :S 1uzeA 285 :N T0547 451 :PDFW 1uzeA 287 :YDLV T0547 456 :L 1uzeA 292 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=74069 # 1ylhA.449.545 read from T0547.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)M450 (1ylhA)N527 because P (beta_P) conformation "forbidden" or filtered. T0547 449 :S 1ylhA 526 :A T0547 451 :PDFWGLE 1ylhA 528 :PEAAKLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=74071 # 1b79A.449.39 read from T0547.t04.many.frag # found chain 1b79A in template set T0547 449 :SMPDFWGLE 1b79A 49 :DVAERVVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=74072 # 1lml.449.332 read from T0547.t04.many.frag # found chain 1lml in template set Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE in next template residue (1lml)P434 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE at template residue (1lml)P434 Warning: unaligning (T0547)W454 (1lml)W437 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1lml)Q438 because N (gamma') conformation "forbidden" or filtered. T0547 449 :S 1lml 432 :G T0547 452 :DF 1lml 435 :PY T0547 456 :LE 1lml 439 :YF Number of specific fragments extracted= 3 number of extra gaps= 2 total=74075 # 2bswA.449.28 read from T0547.t04.many.frag # found chain 2bswA in template set Warning: unaligning (T0547)E457 (2bswA)R37 because P (beta_P) conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 2bswA 29 :CMFESDLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=74076 # 1dvoA.449.36 read from T0547.t04.many.frag # found chain 1dvoA in template set Warning: unaligning (T0547)D452 (1dvoA)T72 because P (beta_P) conformation "forbidden" or filtered. T0547 449 :SMP 1dvoA 69 :NLP T0547 453 :FWGLE 1dvoA 73 :LDEAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=74078 # 1wdpA.449.233 read from T0547.t04.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)P451 (1wdpA)G236 because S (epsilon) conformation "forbidden" or filtered. T0547 449 :SM 1wdpA 234 :DA T0547 452 :DFWGLE 1wdpA 237 :KYNDVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74080 # 1t3tA.449.149 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 449 :SMPDFWGLE 1t3tA 142 :SLTDAEKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=74081 # 1pq1A.449.106 read from T0547.t04.many.frag # found chain 1pq1A in training set Warning: unaligning (T0547)S449 (1pq1A)D107 because L (left) conformation "forbidden" or filtered. T0547 450 :MPDFWGLE 1pq1A 108 :LTSQLHIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=74082 # 1kwgA.449.171 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 449 :SMPDFWGLE 1kwgA 172 :ALNEAWGTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74083 # 2b4vA.449.322 read from T0547.t04.many.frag # found chain 2b4vA in training set Warning: unaligning (T0547)G455 (2b4vA)H348 because G (3-10) conformation "forbidden" or filtered. T0547 449 :SMPDFW 2b4vA 342 :SLPHPA T0547 456 :LE 2b4vA 349 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74085 # 1ydiA.449.144 read from T0547.t04.many.frag # found chain 1ydiA in training set T0547 449 :SMPDFWGLE 1ydiA 140 :GILEYLTVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74086 # 1dk8A.449.126 read from T0547.t04.many.frag # found chain 1dk8A in training set T0547 449 :SMPDFWGLE 1dk8A 237 :SFLKSDIYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74087 # 1on3A.449.487 read from T0547.t04.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)P451 (1on3A)I491 because E (beta_S) conformation "forbidden" or filtered. T0547 449 :SM 1on3A 489 :DV T0547 452 :DFWGLE 1on3A 492 :DPADTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=74089 # 1l8bA.449.40 read from T0547.t04.many.frag # found chain 1l8bA in training set T0547 449 :SMPDFWGLE 1l8bA 68 :TVEDFWALY Number of specific fragments extracted= 1 number of extra gaps= 0 total=74090 # 1a12A.449.204 read from T0547.t04.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)S449 (1a12A)N213 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (1a12A)R214 because P (beta_P) conformation "forbidden" or filtered. T0547 451 :PDFWGLE 1a12A 215 :GGRQGLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=74091 # 1h5uA.449.513 read from T0547.t04.many.frag # found chain 1h5uA in template set T0547 449 :SMPDFWGLE 1h5uA 514 :DLDQLRKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74092 # 1vjxA.449.63 read from T0547.t04.many.frag # found chain 1vjxA in template set Warning: unaligning (T0547)F453 (1vjxA)Q56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1vjxA)N58 because P (beta_P) conformation "forbidden" or filtered. T0547 449 :SMPD 1vjxA 52 :KMSD T0547 454 :W 1vjxA 57 :E T0547 456 :LE 1vjxA 59 :WD Number of specific fragments extracted= 3 number of extra gaps= 2 total=74095 # 1evsA.449.90 read from T0547.t04.many.frag # found chain 1evsA in template set Warning: unaligning (T0547)M450 (1evsA)L92 because P (beta_P) conformation "forbidden" or filtered. T0547 449 :S 1evsA 91 :R T0547 451 :PDFWGLE 1evsA 93 :PKAQDLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=74097 # 1k8wA.449.252 read from T0547.t04.many.frag # found chain 1k8wA in template set T0547 449 :SMPDFWGLE 1k8wA 240 :LLMPMDSPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74098 # 1yk4A.449.30 read from T0547.t04.many.frag # found chain 1yk4A in template set Warning: unaligning (T0547)F453 (1yk4A)D36 because G (3-10) conformation "forbidden" or filtered. T0547 449 :SMPD 1yk4A 32 :DLPD T0547 454 :WGLE 1yk4A 37 :WVCP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74100 # 1umgA.449.241 read from T0547.t04.many.frag # found chain 1umgA in training set T0547 449 :SMPDFWGLE 1umgA 244 :GLPALGEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74101 # 1fkmA.449.146 read from T0547.t04.many.frag # found chain 1fkmA in template set Warning: unaligning (T0547)P451 (1fkmA)L396 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (1fkmA)P397 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1fkmA)Q400 because G (3-10) conformation "forbidden" or filtered. T0547 449 :SM 1fkmA 394 :EY T0547 453 :FW 1fkmA 398 :PS T0547 456 :LE 1fkmA 401 :ID Number of specific fragments extracted= 3 number of extra gaps= 2 total=74104 # 1h5uA.449.739 read from T0547.t04.many.frag # found chain 1h5uA in template set Warning: unaligning (T0547)E457 (1h5uA)G748 because T (delta_L) conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1h5uA 740 :QIIEQLSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=74105 # 1uzeA.450.468 read from T0547.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)P451 (1uzeA)F506 because D (zeta) conformation "forbidden" or filtered. T0547 450 :M 1uzeA 505 :D T0547 452 :DFWGLEQ 1uzeA 507 :DPGAKFH Number of specific fragments extracted= 2 number of extra gaps= 1 total=74107 # 1y6zA.450.89 read from T0547.t04.many.frag # found chain 1y6zA in template set T0547 450 :MPDFWGLEQ 1y6zA 88 :IPRWLTFLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=74108 # 2bswA.450.29 read from T0547.t04.many.frag # found chain 2bswA in template set Warning: unaligning (T0547)G455 (2bswA)L35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (2bswA)R37 because P (beta_P) conformation "forbidden" or filtered. T0547 450 :MPDFW 2bswA 30 :MFESD T0547 456 :L 2bswA 36 :L T0547 458 :Q 2bswA 38 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=74111 # 1h0hB.450.109 read from T0547.t04.many.frag # found chain 1h0hB in training set T0547 450 :MPDFWGLEQ 1h0hB 110 :LEDYESVIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=74112 # 1e2kA.450.242 read from T0547.t04.many.frag # found chain 1e2kA in training set Warning: unaligning (T0547)G455 (1e2kA)R293 because G (3-10) conformation "forbidden" or filtered. T0547 450 :MPDFW 1e2kA 288 :LFTLF T0547 456 :LEQ 1e2kA 294 :APE Number of specific fragments extracted= 2 number of extra gaps= 1 total=74114 # 2b4vA.450.323 read from T0547.t04.many.frag # found chain 2b4vA in training set Warning: unaligning (T0547)G455 (2b4vA)H348 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (2b4vA)P350 because P (beta_P) conformation "forbidden" or filtered. T0547 450 :MPDFW 2b4vA 343 :LPHPA T0547 456 :L 2b4vA 349 :L T0547 458 :Q 2b4vA 351 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=74117 # 1lml.450.333 read from T0547.t04.many.frag # found chain 1lml in template set Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE in next template residue (1lml)P434 Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE at template residue (1lml)P434 Warning: unaligning (T0547)G455 (1lml)Q438 because N (gamma') conformation "forbidden" or filtered. T0547 452 :DFW 1lml 435 :PYW T0547 456 :LEQ 1lml 439 :YFT Number of specific fragments extracted= 2 number of extra gaps= 2 total=74119 # 1ylhA.450.546 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 450 :MPDFWGLEQ 1ylhA 527 :NPEAAKLVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=74120 # 1k8wA.450.253 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)W454 (1k8wA)D245 because G (3-10) conformation "forbidden" or filtered. T0547 450 :MPDF 1k8wA 241 :LMPM T0547 455 :GLEQ 1k8wA 246 :SPAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=74122 # 1uzeA.450.249 read from T0547.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)M450 (1uzeA)I286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W454 (1uzeA)V290 because G (3-10) conformation "forbidden" or filtered. T0547 451 :PDF 1uzeA 287 :YDL T0547 455 :GLEQ 1uzeA 291 :VPFP Number of specific fragments extracted= 2 number of extra gaps= 2 total=74124 # 1ro7A.450.210 read from T0547.t04.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)P451 (1ro7A)C212 because D (zeta) conformation "forbidden" or filtered. T0547 450 :M 1ro7A 211 :L T0547 452 :DFWGLEQ 1ro7A 213 :PNSLLAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=74126 # 1m40A.450.194 read from T0547.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)M450 (1m40A)L220 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q458 (1m40A)G228 because T (delta_L) conformation "forbidden" or filtered. T0547 451 :PDFWGLE 1m40A 221 :LRSALPA Number of specific fragments extracted= 1 number of extra gaps= 2 total=74127 # 1t3tA.450.150 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 450 :MPDFWGLEQ 1t3tA 143 :LTDAEKLFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=74128 # 1t3tA.450.153 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)G455 (1t3tA)I151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (1t3tA)H153 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q458 (1t3tA)Q154 because P (beta_P) conformation "forbidden" or filtered. T0547 450 :MPDFW 1t3tA 146 :AEKLF T0547 456 :L 1t3tA 152 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=74130 # 1fkmA.450.147 read from T0547.t04.many.frag # found chain 1fkmA in template set Warning: unaligning (T0547)P451 (1fkmA)L396 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1fkmA)Q400 because G (3-10) conformation "forbidden" or filtered. T0547 450 :M 1fkmA 395 :Y T0547 452 :DFW 1fkmA 397 :PPS T0547 456 :LEQ 1fkmA 401 :IDD Number of specific fragments extracted= 3 number of extra gaps= 2 total=74133 # 1on3A.450.488 read from T0547.t04.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)P451 (1on3A)I491 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1on3A)D495 because G (3-10) conformation "forbidden" or filtered. T0547 450 :M 1on3A 490 :V T0547 452 :DFW 1on3A 492 :DPA T0547 456 :LEQ 1on3A 496 :TRR Number of specific fragments extracted= 3 number of extra gaps= 2 total=74136 # 1b79A.450.40 read from T0547.t04.many.frag # found chain 1b79A in template set Warning: unaligning (T0547)F453 (1b79A)R53 because G (3-10) conformation "forbidden" or filtered. T0547 450 :MPD 1b79A 50 :VAE T0547 454 :WGLEQ 1b79A 54 :VVADD Number of specific fragments extracted= 2 number of extra gaps= 1 total=74138 # 1pq1A.450.107 read from T0547.t04.many.frag # found chain 1pq1A in training set T0547 450 :MPDFWGLEQ 1pq1A 108 :LTSQLHITP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74139 # 1dk8A.450.127 read from T0547.t04.many.frag # found chain 1dk8A in training set T0547 450 :MPDFWGLEQ 1dk8A 238 :FLKSDIYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=74140 # 1a12A.450.205 read from T0547.t04.many.frag # found chain 1a12A in training set T0547 450 :MPDFWGLEQ 1a12A 214 :RGGRQGLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=74141 # 1ydiA.450.145 read from T0547.t04.many.frag # found chain 1ydiA in training set T0547 450 :MPDFWGLEQ 1ydiA 141 :ILEYLTVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=74142 # 1kwgA.450.172 read from T0547.t04.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)Q458 (1kwgA)F181 because P (beta_P) conformation "forbidden" or filtered. T0547 450 :MPDFWGLE 1kwgA 173 :LNEAWGTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=74143 # 1h5uA.450.514 read from T0547.t04.many.frag # found chain 1h5uA in template set T0547 450 :MPDFWGLEQ 1h5uA 515 :LDQLRKLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=74144 # 1wdpA.450.234 read from T0547.t04.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)P451 (1wdpA)G236 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (1wdpA)K237 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1wdpA)D240 because P (beta_P) conformation "forbidden" or filtered. T0547 450 :M 1wdpA 235 :A T0547 453 :FW 1wdpA 238 :YN T0547 456 :LEQ 1wdpA 241 :VPE Number of specific fragments extracted= 3 number of extra gaps= 2 total=74147 # 1on3A.450.271 read from T0547.t04.many.frag # found chain 1on3A in template set T0547 450 :MPDFWGLEQ 1on3A 273 :VSPNTELRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=74148 1jfzA expands to /projects/compbio/data/pdb/1jfz.pdb.gz 1jfzA:Skipped atom 53, because occupancy 0.500 <= existing 0.500 in 1jfzA Skipped atom 55, because occupancy 0.500 <= existing 0.500 in 1jfzA Skipped atom 57, because occupancy 0.500 <= existing 0.500 in 1jfzA Skipped atom 59, because occupancy 0.500 <= existing 0.500 in 1jfzA Skipped atom 651, because occupancy 0.500 <= existing 0.500 in 1jfzA Skipped atom 653, because occupancy 0.500 <= existing 0.500 in 1jfzA Skipped atom 655, because occupancy 0.500 <= existing 0.500 in 1jfzA Skipped atom 657, because occupancy 0.500 <= existing 0.500 in 1jfzA # 1jfzA.450.83 read from T0547.t04.many.frag # adding 1jfzA to template set # found chain 1jfzA in template set T0547 450 :MPDFWGLEQ 1jfzA 83 :LAQKLELHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=74149 # 1evsA.450.91 read from T0547.t04.many.frag # found chain 1evsA in template set T0547 450 :MPDFWGLEQ 1evsA 92 :LPKAQDLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=74150 # 1l8bA.450.41 read from T0547.t04.many.frag # found chain 1l8bA in training set T0547 450 :MPDFWGLEQ 1l8bA 69 :VEDFWALYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=74151 # 1ynbA.450.22 read from T0547.t04.many.frag # found chain 1ynbA in training set T0547 450 :MPDFWGLEQ 1ynbA 23 :TPRSGWLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74152 # 1o97D.450.243 read from T0547.t04.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)G455 (1o97D)Q249 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (1o97D)G251 because S (epsilon) conformation "forbidden" or filtered. T0547 450 :MPDFW 1o97D 244 :LPKSR T0547 456 :L 1o97D 250 :V T0547 458 :Q 1o97D 252 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=74155 # 1uzeA.451.469 read from T0547.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)P451 (1uzeA)F506 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1uzeA)A510 because G (3-10) conformation "forbidden" or filtered. T0547 452 :DFW 1uzeA 507 :DPG T0547 456 :LEQN 1uzeA 511 :KFHI Number of specific fragments extracted= 2 number of extra gaps= 2 total=74157 # 2bswA.451.30 read from T0547.t04.many.frag # found chain 2bswA in template set Warning: unaligning (T0547)Q458 (2bswA)G38 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (2bswA)A39 because P (beta_P) conformation "forbidden" or filtered. T0547 451 :PDFWGLE 2bswA 31 :FESDLLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=74158 # 1fkmA.451.148 read from T0547.t04.many.frag # found chain 1fkmA in template set Warning: unaligning (T0547)P451 (1fkmA)L396 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (1fkmA)P397 because P (beta_P) conformation "forbidden" or filtered. T0547 453 :FWGLEQN 1fkmA 398 :PSQIDDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=74159 # 1e2kA.451.243 read from T0547.t04.many.frag # found chain 1e2kA in training set T0547 451 :PDFWGLEQN 1e2kA 289 :FTLFRAPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74160 # 1ylhA.451.547 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 451 :PDFWGLEQN 1ylhA 528 :PEAAKLVGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74161 # 1uzeA.451.250 read from T0547.t04.many.frag # found chain 1uzeA in template set T0547 451 :PDFWGLEQN 1uzeA 287 :YDLVVPFPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=74162 # 2b4vA.451.324 read from T0547.t04.many.frag # found chain 2b4vA in training set T0547 451 :PDFWGLEQN 2b4vA 344 :PHPAHLPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=74163 # 1on3A.451.272 read from T0547.t04.many.frag # found chain 1on3A in template set T0547 451 :PDFWGLEQN 1on3A 274 :SPNTELRDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=74164 # 1ro7A.451.211 read from T0547.t04.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)P451 (1ro7A)C212 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)F453 (1ro7A)N214 because G (3-10) conformation "forbidden" or filtered. T0547 452 :D 1ro7A 213 :P T0547 454 :WGLEQN 1ro7A 215 :SLLANF Number of specific fragments extracted= 2 number of extra gaps= 2 total=74166 # 1lml.451.334 read from T0547.t04.many.frag # found chain 1lml in template set Warning: unaligning (T0547)P451 because of BadResidue code BAD_PEPTIDE at template residue (1lml)P434 T0547 452 :DFWGLEQN 1lml 435 :PYWQYFTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=74167 # 1k8wA.451.254 read from T0547.t04.many.frag # found chain 1k8wA in template set T0547 451 :PDFWGLEQN 1k8wA 242 :MPMDSPASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=74168 # 1dk8A.451.128 read from T0547.t04.many.frag # found chain 1dk8A in training set T0547 451 :PDFWGLEQN 1dk8A 239 :LKSDIYLEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=74169 # 1t3tA.451.151 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 451 :PDFWGLEQN 1t3tA 144 :TDAEKLFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=74170 # 1ynbA.451.23 read from T0547.t04.many.frag # found chain 1ynbA in training set Warning: unaligning (T0547)N459 (1ynbA)G32 because T (delta_L) conformation "forbidden" or filtered. T0547 451 :PDFWGLEQ 1ynbA 24 :PRSGWLKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=74171 # 1ydiA.451.146 read from T0547.t04.many.frag # found chain 1ydiA in training set Warning: unaligning (T0547)N459 (1ydiA)V150 because G (3-10) conformation "forbidden" or filtered. T0547 451 :PDFWGLEQ 1ydiA 142 :LEYLTVAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=74172 # 1m40A.451.195 read from T0547.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)G455 (1m40A)L225 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q458 (1m40A)G228 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1m40A)W229 because P (beta_P) conformation "forbidden" or filtered. T0547 451 :PDFW 1m40A 221 :LRSA T0547 456 :LE 1m40A 226 :PA Number of specific fragments extracted= 2 number of extra gaps= 2 total=74174 # 1kwgA.451.173 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 451 :PDFWGLEQN 1kwgA 174 :NEAWGTAFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=74175 # 1a12A.451.206 read from T0547.t04.many.frag # found chain 1a12A in training set T0547 451 :PDFWGLEQN 1a12A 215 :GGRQGLERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74176 # 1h0hB.451.110 read from T0547.t04.many.frag # found chain 1h0hB in training set Warning: unaligning (T0547)D452 (1h0hB)D112 because D (zeta) conformation "forbidden" or filtered. T0547 451 :P 1h0hB 111 :E T0547 453 :FWGLEQN 1h0hB 113 :YESVISA Number of specific fragments extracted= 2 number of extra gaps= 1 total=74178 # 1t3tA.451.154 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)E457 (1t3tA)H153 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1t3tA)P155 because P (beta_P) conformation "forbidden" or filtered. T0547 451 :PDFWGL 1t3tA 147 :EKLFIH T0547 458 :Q 1t3tA 154 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=74180 # 4dpvZ.451.240 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 451 :PDFWGLEQN 4dpvZ 241 :VQFYTIENS Number of specific fragments extracted= 1 number of extra gaps= 0 total=74181 # 1zvtA.451.122 read from T0547.t04.many.frag # found chain 1zvtA in training set Warning: unaligning (T0547)P451 (1zvtA)K619 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1zvtA)T623 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1zvtA)N627 because T (delta_L) conformation "forbidden" or filtered. T0547 452 :DFW 1zvtA 620 :ALI T0547 456 :LEQ 1zvtA 624 :LPE Number of specific fragments extracted= 2 number of extra gaps= 3 total=74183 # 1o97D.451.244 read from T0547.t04.many.frag # found chain 1o97D in training set T0547 451 :PDFWGLEQN 1o97D 245 :PKSRQVGQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=74184 # 1b79A.451.41 read from T0547.t04.many.frag # found chain 1b79A in template set T0547 451 :PDFWGLEQN 1b79A 51 :AERVVADDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=74185 # 2czsA.451.44 read from T0547.t04.many.frag # found chain 2czsA in training set Warning: unaligning (T0547)F453 (2czsA)G69 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (2czsA)P71 because P (beta_P) conformation "forbidden" or filtered. T0547 451 :PD 2czsA 67 :PG T0547 454 :W 2czsA 70 :I T0547 456 :LEQN 2czsA 72 :FPKN Number of specific fragments extracted= 3 number of extra gaps= 2 total=74188 # 1l8aA.451.782 read from T0547.t04.many.frag # found chain 1l8aA in template set T0547 451 :PDFWGLEQN 1l8aA 783 :PRVPYIAQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=74189 # 1v0dA.451.232 read from T0547.t04.many.frag # found chain 1v0dA in template set Warning: unaligning (T0547)N459 (1v0dA)K241 because L (left) conformation "forbidden" or filtered. T0547 451 :PDFWGLEQ 1v0dA 233 :FDLESCLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=74190 # 1mtyD.451.389 read from T0547.t04.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)N459 (1mtyD)N412 because L (left) conformation "forbidden" or filtered. T0547 451 :PDFWGLEQ 1mtyD 404 :PLMWFIEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=74191 # 1jfzA.451.84 read from T0547.t04.many.frag # found chain 1jfzA in template set T0547 451 :PDFWGLEQN 1jfzA 84 :AQKLELHKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=74192 # 1f06A.451.229 read from T0547.t04.many.frag # found chain 1f06A in template set Warning: unaligning (T0547)P451 (1f06A)I230 because E (beta_S) conformation "forbidden" or filtered. T0547 452 :DFWGLEQN 1f06A 231 :DEATFDSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=74193 # 1uzeA.452.470 read from T0547.t04.many.frag # found chain 1uzeA in template set T0547 452 :DFWGLEQNF 1uzeA 507 :DPGAKFHIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74194 # 2bswA.452.31 read from T0547.t04.many.frag # found chain 2bswA in template set Warning: unaligning (T0547)G455 (2bswA)L35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q458 (2bswA)G38 because T (delta_L) conformation "forbidden" or filtered. T0547 452 :DFW 2bswA 32 :ESD T0547 456 :LE 2bswA 36 :LR T0547 459 :NF 2bswA 39 :AF Number of specific fragments extracted= 3 number of extra gaps= 2 total=74197 # 1fkmA.452.149 read from T0547.t04.many.frag # found chain 1fkmA in template set Warning: unaligning (T0547)G455 (1fkmA)Q400 because G (3-10) conformation "forbidden" or filtered. T0547 452 :DFW 1fkmA 397 :PPS T0547 456 :LEQNF 1fkmA 401 :IDDVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=74199 # 1ro7A.452.212 read from T0547.t04.many.frag # found chain 1ro7A in training set T0547 452 :DFWGLEQNF 1ro7A 213 :PNSLLANFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=74200 # 1on3A.452.273 read from T0547.t04.many.frag # found chain 1on3A in template set T0547 452 :DFWGLEQNF 1on3A 275 :PNTELRDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=74201 # 1uzeA.452.251 read from T0547.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)W454 (1uzeA)V290 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (1uzeA)F293 because D (zeta) conformation "forbidden" or filtered. T0547 452 :DF 1uzeA 288 :DL T0547 455 :GL 1uzeA 291 :VP T0547 458 :QNF 1uzeA 294 :PSA Number of specific fragments extracted= 3 number of extra gaps= 2 total=74204 # 2b4vA.452.325 read from T0547.t04.many.frag # found chain 2b4vA in training set Warning: unaligning (T0547)G455 (2b4vA)H348 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (2b4vA)Y352 because E (beta_S) conformation "forbidden" or filtered. T0547 452 :DFW 2b4vA 345 :HPA T0547 456 :LEQ 2b4vA 349 :LPR T0547 460 :F 2b4vA 353 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=74207 # 1ylhA.452.548 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 452 :DFWGLEQNF 1ylhA 529 :EAAKLVGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=74208 # 1e2kA.452.244 read from T0547.t04.many.frag # found chain 1e2kA in training set Warning: unaligning (T0547)W454 (1e2kA)F292 because G (3-10) conformation "forbidden" or filtered. T0547 452 :DF 1e2kA 290 :TL T0547 455 :GLEQNF 1e2kA 293 :RAPELL Number of specific fragments extracted= 2 number of extra gaps= 1 total=74210 # 1ydiA.452.147 read from T0547.t04.many.frag # found chain 1ydiA in training set T0547 452 :DFWGLEQNF 1ydiA 143 :EYLTVAEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=74211 # 1zvtA.452.123 read from T0547.t04.many.frag # found chain 1zvtA in training set T0547 452 :DFWGLEQNF 1zvtA 620 :ALITLPENA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74212 # 1k8wA.452.255 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)W454 (1k8wA)D245 because G (3-10) conformation "forbidden" or filtered. T0547 452 :DF 1k8wA 243 :PM T0547 455 :GLEQNF 1k8wA 246 :SPASDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=74214 # 4dpvZ.452.241 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 452 :DFWGLEQNF 4dpvZ 242 :QFYTIENSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=74215 # 1dk8A.452.129 read from T0547.t04.many.frag # found chain 1dk8A in training set T0547 452 :DFWGLEQNF 1dk8A 240 :KSDIYLEYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=74216 # 1t56A.452.153 read from T0547.t04.many.frag # found chain 1t56A in training set T0547 452 :DFWGLEQNF 1t56A 154 :DAERDRGAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74217 # 1o97D.452.245 read from T0547.t04.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)N459 (1o97D)S253 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F460 (1o97D)G254 because Y (epsilon') conformation "forbidden" or filtered. T0547 452 :DFWGLEQ 1o97D 246 :KSRQVGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=74218 # 1jfzA.452.85 read from T0547.t04.many.frag # found chain 1jfzA in template set T0547 452 :DFWGLEQNF 1jfzA 85 :QKLELHKFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=74219 # 1mtyD.452.390 read from T0547.t04.many.frag # found chain 1mtyD in training set T0547 452 :DFWGLEQNF 1mtyD 405 :LMWFIENNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=74220 # 2czsA.452.45 read from T0547.t04.many.frag # found chain 2czsA in training set Warning: unaligning (T0547)F453 (2czsA)G69 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (2czsA)P71 because P (beta_P) conformation "forbidden" or filtered. T0547 452 :D 2czsA 68 :G T0547 454 :W 2czsA 70 :I T0547 456 :LEQNF 2czsA 72 :FPKNH Number of specific fragments extracted= 3 number of extra gaps= 2 total=74223 # 1b79A.452.42 read from T0547.t04.many.frag # found chain 1b79A in template set Warning: unaligning (T0547)N459 (1b79A)F59 because P (beta_P) conformation "forbidden" or filtered. T0547 452 :DFWGLEQ 1b79A 52 :ERVVADD T0547 460 :F 1b79A 60 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=74225 # 1a12A.452.207 read from T0547.t04.many.frag # found chain 1a12A in training set T0547 452 :DFWGLEQNF 1a12A 216 :GRQGLERLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74226 # 1j0dA.452.327 read from T0547.t04.many.frag # found chain 1j0dA in template set T0547 452 :DFWGLEQNF 1j0dA 328 :ALSAYSSFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=74227 # 1l8aA.452.783 read from T0547.t04.many.frag # found chain 1l8aA in template set T0547 452 :DFWGLEQNF 1l8aA 784 :RVPYIAQVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=74228 # 1t3tA.452.152 read from T0547.t04.many.frag # found chain 1t3tA in template set T0547 452 :DFWGLEQNF 1t3tA 145 :DAEKLFIHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=74229 # 1lml.452.335 read from T0547.t04.many.frag # found chain 1lml in template set Warning: unaligning (T0547)G455 (1lml)Q438 because N (gamma') conformation "forbidden" or filtered. T0547 452 :DFW 1lml 435 :PYW T0547 456 :LEQNF 1lml 439 :YFTDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74231 2bbkL expands to /projects/compbio/data/pdb/2bbk.pdb.gz 2bbkL:Skipped atom 2921, because occupancy 0.500 <= existing 0.500 in 2bbkL Skipped atom 3407, because occupancy 0.500 <= existing 0.500 in 2bbkL # 2bbkL.452.89 read from T0547.t04.many.frag # adding 2bbkL to template set # found chain 2bbkL in template set Warning: unaligning (T0547)D452 (2bbkL)P96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W454 (2bbkL)Y98 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (2bbkL)R99 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)F460 (2bbkL)N104 because G (3-10) conformation "forbidden" or filtered. T0547 453 :F 2bbkL 97 :V T0547 456 :LEQN 2bbkL 100 :PEFA Number of specific fragments extracted= 2 number of extra gaps= 3 total=74233 # 1f06A.452.230 read from T0547.t04.many.frag # found chain 1f06A in template set T0547 452 :DFWGLEQNF 1f06A 231 :DEATFDSEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=74234 # 2c3nA.452.218 read from T0547.t04.many.frag # found chain 2c3nA in training set Warning: unaligning (T0547)N459 (2c3nA)D219 because G (3-10) conformation "forbidden" or filtered. T0547 452 :DFWGLEQ 2c3nA 212 :EVILKAK T0547 460 :F 2c3nA 220 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=74236 # 1tvgA.452.14 read from T0547.t04.many.frag # found chain 1tvgA in training set T0547 452 :DFWGLEQNF 1tvgA 5 :DLCLSSEGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=74237 # 1mtyD.452.377 read from T0547.t04.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)W454 (1mtyD)G394 because T (delta_L) conformation "forbidden" or filtered. T0547 452 :DF 1mtyD 392 :AR T0547 455 :GLEQNF 1mtyD 395 :CEDPSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=74239 # 1uzeA.453.471 read from T0547.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)P461 (1uzeA)S516 because G (3-10) conformation "forbidden" or filtered. T0547 453 :FWGLEQNF 1uzeA 508 :PGAKFHIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=74240 # 2b4vA.453.326 read from T0547.t04.many.frag # found chain 2b4vA in training set T0547 453 :FWGLEQNFP 2b4vA 346 :PAHLPRYPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=74241 # 1fkmA.453.150 read from T0547.t04.many.frag # found chain 1fkmA in template set Warning: unaligning (T0547)G455 (1fkmA)Q400 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1fkmA)I406 because G (3-10) conformation "forbidden" or filtered. T0547 453 :FW 1fkmA 398 :PS T0547 456 :LEQNF 1fkmA 401 :IDDVE Number of specific fragments extracted= 2 number of extra gaps= 2 total=74243 # 1ro7A.453.213 read from T0547.t04.many.frag # found chain 1ro7A in training set T0547 453 :FWGLEQNFP 1ro7A 214 :NSLLANFIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=74244 # 1on3A.453.274 read from T0547.t04.many.frag # found chain 1on3A in template set T0547 453 :FWGLEQNFP 1on3A 276 :NTELRDIVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74245 # 1ylhA.453.549 read from T0547.t04.many.frag # found chain 1ylhA in template set T0547 453 :FWGLEQNFP 1ylhA 530 :AAKLVGAGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74246 # 1uzeA.453.252 read from T0547.t04.many.frag # found chain 1uzeA in template set T0547 453 :FWGLEQNFP 1uzeA 289 :LVVPFPSAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74247 # 1zvtA.453.124 read from T0547.t04.many.frag # found chain 1zvtA in training set Warning: unaligning (T0547)G455 (1zvtA)T623 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1zvtA)N627 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1zvtA)H629 because E (beta_S) conformation "forbidden" or filtered. T0547 453 :FW 1zvtA 621 :LI T0547 456 :LEQ 1zvtA 624 :LPE T0547 460 :F 1zvtA 628 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=74250 # 4dpvZ.453.242 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 453 :FWGLEQNFP 4dpvZ 243 :FYTIENSVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74251 # 1j0dA.453.328 read from T0547.t04.many.frag # found chain 1j0dA in template set T0547 453 :FWGLEQNFP 1j0dA 329 :LSAYSSFFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74252 # 1k8wA.453.256 read from T0547.t04.many.frag # found chain 1k8wA in template set T0547 453 :FWGLEQNFP 1k8wA 244 :MDSPASDYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74253 # 1mtyD.453.391 read from T0547.t04.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)N459 (1mtyD)N412 because L (left) conformation "forbidden" or filtered. T0547 453 :FWGLEQ 1mtyD 406 :MWFIEN T0547 460 :FP 1mtyD 413 :HP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74255 # 1e2kA.453.245 read from T0547.t04.many.frag # found chain 1e2kA in training set T0547 453 :FWGLEQNFP 1e2kA 291 :LFRAPELLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74256 # 2d1eA.453.27 read from T0547.t04.many.frag # found chain 2d1eA in training set T0547 453 :FWGLEQNFP 2d1eA 28 :IAASWQSLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74257 # 1ydiA.453.148 read from T0547.t04.many.frag # found chain 1ydiA in training set Warning: unaligning (T0547)N459 (1ydiA)V150 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1ydiA)E152 because G (3-10) conformation "forbidden" or filtered. T0547 453 :FWGLEQ 1ydiA 144 :YLTVAE T0547 460 :F 1ydiA 151 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=74259 # 1nlnA.453.142 read from T0547.t04.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 453 :FWGLEQNF 1nlnA 143 :HNPTMNLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=74260 # 2czsA.453.46 read from T0547.t04.many.frag # found chain 2czsA in training set Warning: unaligning (T0547)F453 (2czsA)G69 because S (epsilon) conformation "forbidden" or filtered. T0547 454 :WGLEQNFP 2czsA 70 :IPFPKNHP Number of specific fragments extracted= 1 number of extra gaps= 1 total=74261 # 1l8aA.453.784 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)P461 (1l8aA)N793 because Y (epsilon') conformation "forbidden" or filtered. T0547 453 :FWGLEQNF 1l8aA 785 :VPYIAQVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=74262 # 1mtyD.453.378 read from T0547.t04.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)N459 (1mtyD)S399 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1mtyD)G401 because T (delta_L) conformation "forbidden" or filtered. T0547 453 :FWGLEQ 1mtyD 393 :RGCEDP T0547 460 :F 1mtyD 400 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=74264 # 1t56A.453.154 read from T0547.t04.many.frag # found chain 1t56A in training set T0547 453 :FWGLEQNFP 1t56A 155 :AERDRGAAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74265 # 1f06A.453.231 read from T0547.t04.many.frag # found chain 1f06A in template set Warning: unaligning (T0547)P461 (1f06A)T240 because G (3-10) conformation "forbidden" or filtered. T0547 453 :FWGLEQNF 1f06A 232 :EATFDSEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=74266 # 1o97D.453.246 read from T0547.t04.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)G455 (1o97D)Q249 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (1o97D)G251 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1o97D)S253 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1o97D)K255 because E (beta_S) conformation "forbidden" or filtered. T0547 453 :FW 1o97D 247 :SR T0547 456 :L 1o97D 250 :V T0547 458 :Q 1o97D 252 :Q T0547 460 :F 1o97D 254 :G Number of specific fragments extracted= 4 number of extra gaps= 4 total=74270 # 1dk8A.453.130 read from T0547.t04.many.frag # found chain 1dk8A in training set T0547 453 :FWGLEQNFP 1dk8A 241 :SDIYLEYTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=74271 # 2bbkL.453.90 read from T0547.t04.many.frag # found chain 2bbkL in template set Warning: unaligning (T0547)N459 (2bbkL)A103 because P (beta_P) conformation "forbidden" or filtered. T0547 453 :FWGLEQ 2bbkL 97 :VYRPEF T0547 460 :FP 2bbkL 104 :ND Number of specific fragments extracted= 2 number of extra gaps= 1 total=74273 # 2bswA.453.32 read from T0547.t04.many.frag # found chain 2bswA in template set Warning: unaligning (T0547)G455 (2bswA)L35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (2bswA)R37 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q458 (2bswA)G38 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (2bswA)H41 because E (beta_S) conformation "forbidden" or filtered. T0547 453 :FW 2bswA 33 :SD T0547 456 :L 2bswA 36 :L T0547 459 :NF 2bswA 39 :AF Number of specific fragments extracted= 3 number of extra gaps= 3 total=74276 # 1qg8A.453.193 read from T0547.t04.many.frag # found chain 1qg8A in training set Warning: unaligning (T0547)N459 (1qg8A)F201 because G (3-10) conformation "forbidden" or filtered. T0547 453 :FWGLEQ 1qg8A 195 :FWRVNH T0547 460 :FP 1qg8A 202 :YP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74278 # 1umgA.453.245 read from T0547.t04.many.frag # found chain 1umgA in training set T0547 453 :FWGLEQNFP 1umgA 248 :LGEALEAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74279 # 1lvmA.453.91 read from T0547.t04.many.frag # found chain 1lvmA in training set T0547 453 :FWGLEQNFP 1lvmA 84 :IIRMPKDFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74280 # 1tvgA.453.15 read from T0547.t04.many.frag # found chain 1tvgA in training set Warning: unaligning (T0547)G455 (1tvgA)L8 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1tvgA)G12 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1tvgA)E14 because E (beta_S) conformation "forbidden" or filtered. T0547 453 :FW 1tvgA 6 :LC T0547 456 :LEQ 1tvgA 9 :SSE T0547 460 :F 1tvgA 13 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=74283 # 1jiwI.453.46 read from T0547.t04.many.frag # found chain 1jiwI in training set T0547 453 :FWGLEQNFP 1jiwI 47 :TACLTRWLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74284 # 1uzeA.454.472 read from T0547.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)P461 (1uzeA)S516 because G (3-10) conformation "forbidden" or filtered. T0547 454 :WGLEQNF 1uzeA 509 :GAKFHIP T0547 462 :I 1uzeA 517 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=74286 # 2b4vA.454.327 read from T0547.t04.many.frag # found chain 2b4vA in training set Warning: unaligning (T0547)G455 (2b4vA)H348 because G (3-10) conformation "forbidden" or filtered. T0547 454 :W 2b4vA 347 :A T0547 456 :LEQNFPI 2b4vA 349 :LPRYPDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=74288 # 2d1eA.454.28 read from T0547.t04.many.frag # found chain 2d1eA in training set T0547 454 :WGLEQNFPI 2d1eA 29 :AASWQSLPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74289 # 1ro7A.454.214 read from T0547.t04.many.frag # found chain 1ro7A in training set T0547 454 :WGLEQNFPI 1ro7A 215 :SLLANFIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74290 # 1fkmA.454.151 read from T0547.t04.many.frag # found chain 1fkmA in template set Warning: unaligning (T0547)G455 (1fkmA)Q400 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1fkmA)I406 because G (3-10) conformation "forbidden" or filtered. T0547 454 :W 1fkmA 399 :S T0547 456 :LEQNF 1fkmA 401 :IDDVE T0547 462 :I 1fkmA 407 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=74293 # 1t6eX.454.185 read from T0547.t04.many.frag # found chain 1t6eX in training set T0547 454 :WGLEQNFPI 1t6eX 186 :PQFTQSMPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=74294 # 1ylhA.454.550 read from T0547.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)I462 because last residue in template chain is (1ylhA)K539 T0547 454 :WGLEQNFP 1ylhA 531 :AKLVGAGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74295 # 1zvtA.454.125 read from T0547.t04.many.frag # found chain 1zvtA in training set Warning: unaligning (T0547)P461 (1zvtA)H629 because E (beta_S) conformation "forbidden" or filtered. T0547 454 :WGLEQNF 1zvtA 622 :ITLPENA T0547 462 :I 1zvtA 630 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=74297 # 1nlnA.454.143 read from T0547.t04.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 454 :WGLEQNF 1nlnA 144 :NPTMNLI T0547 462 :I 1nlnA 152 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=74299 # 1vajA.454.86 read from T0547.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0547)G455 (1vajA)V88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (1vajA)D90 because N (gamma') conformation "forbidden" or filtered. T0547 454 :W 1vajA 87 :A T0547 456 :L 1vajA 89 :D T0547 458 :QNFPI 1vajA 91 :PRFPP Number of specific fragments extracted= 3 number of extra gaps= 2 total=74302 # 1on3A.454.275 read from T0547.t04.many.frag # found chain 1on3A in template set T0547 454 :WGLEQNFPI 1on3A 277 :TELRDIVPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=74303 # 2fnuA.454.322 read from T0547.t04.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)P461 (2fnuA)N330 because L (left) conformation "forbidden" or filtered. T0547 454 :WGLEQNF 2fnuA 323 :QLYQQLF T0547 462 :I 2fnuA 331 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=74305 # 1mtyD.454.379 read from T0547.t04.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)E457 (1mtyD)D397 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1mtyD)G401 because T (delta_L) conformation "forbidden" or filtered. T0547 454 :WGL 1mtyD 394 :GCE T0547 458 :QNF 1mtyD 398 :PSS T0547 462 :I 1mtyD 402 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=74308 # 4dpvZ.454.243 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 454 :WGLEQNFPI 4dpvZ 244 :YTIENSVPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=74309 # 1t56A.454.155 read from T0547.t04.many.frag # found chain 1t56A in training set T0547 454 :WGLEQNFPI 1t56A 156 :ERDRGAAPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=74310 # 2bbkL.454.91 read from T0547.t04.many.frag # found chain 2bbkL in template set T0547 454 :WGLEQNFPI 2bbkL 98 :YRPEFANDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=74311 # 1k8wA.454.257 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)W454 (1k8wA)D245 because G (3-10) conformation "forbidden" or filtered. T0547 455 :GLEQNFPI 1k8wA 246 :SPASDYPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=74312 # 1j0dA.454.329 read from T0547.t04.many.frag # found chain 1j0dA in template set T0547 454 :WGLEQNFPI 1j0dA 330 :SAYSSFFPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=74313 # 2a6aA.454.91 read from T0547.t04.many.frag # found chain 2a6aA in template set T0547 454 :WGLEQNFPI 2a6aA 80 :LVSPYDIPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=74314 # 1mtyD.454.392 read from T0547.t04.many.frag # found chain 1mtyD in training set T0547 454 :WGLEQNFPI 1mtyD 407 :WFIENNHPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=74315 # 1l8aA.454.785 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)P461 (1l8aA)N793 because Y (epsilon') conformation "forbidden" or filtered. T0547 454 :WGLEQNF 1l8aA 786 :PYIAQVM T0547 462 :I 1l8aA 794 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=74317 # 1kaeA.454.371 read from T0547.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0547)W454 (1kaeA)Y372 because L (left) conformation "forbidden" or filtered. T0547 455 :GLEQNFPI 1kaeA 373 :GYTATCSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=74318 # 1uzeA.454.253 read from T0547.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)G455 (1uzeA)V291 because P (beta_P) conformation "forbidden" or filtered. T0547 454 :W 1uzeA 290 :V T0547 456 :LEQNFPI 1uzeA 292 :PFPSAPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=74320 # 1f06A.454.232 read from T0547.t04.many.frag # found chain 1f06A in template set Warning: unaligning (T0547)P461 (1f06A)T240 because G (3-10) conformation "forbidden" or filtered. T0547 454 :WGLEQNF 1f06A 233 :ATFDSEH T0547 462 :I 1f06A 241 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=74322 # 1q0rA.454.215 read from T0547.t04.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)P461 (1q0rA)T223 because E (beta_S) conformation "forbidden" or filtered. T0547 454 :WGLEQNF 1q0rA 216 :PYAHYSL T0547 462 :I 1q0rA 224 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=74324 # 1u8xX.454.326 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)N459 (1u8xX)S309 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1u8xX)N312 Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1u8xX)N312 T0547 454 :WGLEQ 1u8xX 304 :ITREQ T0547 460 :F 1u8xX 310 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=74326 # 2czsA.454.47 read from T0547.t04.many.frag # found chain 2czsA in training set Warning: unaligning (T0547)N459 (2czsA)N75 because T (delta_L) conformation "forbidden" or filtered. T0547 454 :WGLEQ 2czsA 70 :IPFPK T0547 460 :FPI 2czsA 76 :HPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=74328 # 1umgA.454.246 read from T0547.t04.many.frag # found chain 1umgA in training set T0547 454 :WGLEQNFPI 1umgA 249 :GEALEAFAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=74329 # 1qg8A.454.194 read from T0547.t04.many.frag # found chain 1qg8A in training set T0547 454 :WGLEQNFPI 1qg8A 196 :WRVNHFYPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=74330 # 1lvmA.454.92 read from T0547.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0547)G455 (1lvmA)R86 because P (beta_P) conformation "forbidden" or filtered. T0547 454 :W 1lvmA 85 :I T0547 456 :LEQNFPI 1lvmA 87 :MPKDFPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74332 # 1t6eX.455.186 read from T0547.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)N459 (1t6eX)S191 because G (3-10) conformation "forbidden" or filtered. T0547 455 :GLEQ 1t6eX 187 :QFTQ T0547 460 :FPIM 1t6eX 192 :MPYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=74334 # 1nlnA.455.144 read from T0547.t04.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1nlnA 145 :PTMNLI T0547 462 :IM 1nlnA 152 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=74336 # 2d1eA.455.29 read from T0547.t04.many.frag # found chain 2d1eA in training set T0547 455 :GLEQNFPIM 2d1eA 30 :ASWQSLPLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=74337 # 1zn6A.455.199 read from T0547.t04.many.frag # found chain 1zn6A in training set Warning: unaligning (T0547)P461 (1zn6A)L206 because E (beta_S) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1zn6A 200 :DTRDFL T0547 462 :IM 1zn6A 207 :PY Number of specific fragments extracted= 2 number of extra gaps= 1 total=74339 # 1ro7A.455.215 read from T0547.t04.many.frag # found chain 1ro7A in training set T0547 455 :GLEQNFPIM 1ro7A 216 :LLANFIELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74340 # 1zvtA.455.126 read from T0547.t04.many.frag # found chain 1zvtA in training set Warning: unaligning (T0547)G455 (1zvtA)T623 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q458 (1zvtA)E626 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1zvtA)H629 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LE 1zvtA 624 :LP T0547 459 :NF 1zvtA 627 :NA T0547 462 :IM 1zvtA 630 :VM Number of specific fragments extracted= 3 number of extra gaps= 3 total=74343 # 2b4vA.455.328 read from T0547.t04.many.frag # found chain 2b4vA in training set Warning: unaligning (T0547)G455 (2b4vA)H348 because G (3-10) conformation "forbidden" or filtered. T0547 456 :LEQNFPIM 2b4vA 349 :LPRYPDFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=74344 # 1vajA.455.87 read from T0547.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0547)G455 (1vajA)V88 because G (3-10) conformation "forbidden" or filtered. T0547 456 :LEQNFPIM 1vajA 89 :DDPRFPPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=74345 # 4dpvZ.455.244 read from T0547.t04.many.frag # found chain 4dpvZ in template set T0547 455 :GLEQNFPIM 4dpvZ 245 :TIENSVPVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=74346 # 2fnuA.455.323 read from T0547.t04.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)P461 (2fnuA)N330 because L (left) conformation "forbidden" or filtered. T0547 455 :GLEQNF 2fnuA 324 :LYQQLF T0547 462 :IM 2fnuA 331 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=74348 # 1q0rA.455.216 read from T0547.t04.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)G455 (1q0rA)Y217 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1q0rA)T223 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNF 1q0rA 218 :AHYSL T0547 462 :IM 1q0rA 224 :LP Number of specific fragments extracted= 2 number of extra gaps= 2 total=74350 # 1kaeA.455.372 read from T0547.t04.many.frag # found chain 1kaeA in training set T0547 455 :GLEQNFPIM 1kaeA 373 :GYTATCSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74351 # 2bbkL.455.92 read from T0547.t04.many.frag # found chain 2bbkL in template set Warning: unaligning (T0547)G455 (2bbkL)R99 because D (zeta) conformation "forbidden" or filtered. T0547 456 :LEQNFPIM 2bbkL 100 :PEFANDII Number of specific fragments extracted= 1 number of extra gaps= 1 total=74352 # 1uzeA.455.473 read from T0547.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)G455 (1uzeA)A510 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1uzeA)S516 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (1uzeA)S517 because L (left) conformation "forbidden" or filtered. T0547 456 :LEQNF 1uzeA 511 :KFHIP T0547 463 :M 1uzeA 518 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=74354 # 1l8aA.455.786 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)P461 (1l8aA)N793 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1l8aA)A795 because P (beta_P) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1l8aA 787 :YIAQVM T0547 462 :I 1l8aA 794 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=74356 # 1tr9A.455.281 read from T0547.t04.many.frag # found chain 1tr9A in training set T0547 455 :GLEQNFPIM 1tr9A 281 :EVLDNLPIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=74357 # 1ylhA.455.551 read from T0547.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)I462 because last residue in template chain is (1ylhA)K539 T0547 455 :GLEQNFP 1ylhA 532 :KLVGAGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74358 # 1f06A.455.233 read from T0547.t04.many.frag # found chain 1f06A in template set Warning: unaligning (T0547)P461 (1f06A)T240 because G (3-10) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1f06A 234 :TFDSEH T0547 462 :IM 1f06A 241 :GM Number of specific fragments extracted= 2 number of extra gaps= 1 total=74360 # 1j0dA.455.330 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)G455 (1j0dA)A331 because G (3-10) conformation "forbidden" or filtered. T0547 456 :LEQNFPIM 1j0dA 332 :YSSFFPTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=74361 # 2a6aA.455.92 read from T0547.t04.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)N459 (2a6aA)D85 because L (left) conformation "forbidden" or filtered. T0547 455 :GLEQ 2a6aA 81 :VSPY T0547 460 :FPIM 2a6aA 86 :IPVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=74363 # 1mtyD.455.380 read from T0547.t04.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)P461 (1mtyD)G401 because T (delta_L) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1mtyD 395 :CEDPSS T0547 462 :IM 1mtyD 402 :FI Number of specific fragments extracted= 2 number of extra gaps= 1 total=74365 # 1jakA.455.426 read from T0547.t04.many.frag # found chain 1jakA in training set T0547 455 :GLEQNFPIM 1jakA 421 :DPAGYLPGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74366 # 1k8wA.455.258 read from T0547.t04.many.frag # found chain 1k8wA in template set T0547 455 :GLEQNFPIM 1k8wA 246 :SPASDYPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=74367 # 1fkmA.455.152 read from T0547.t04.many.frag # found chain 1fkmA in template set Warning: unaligning (T0547)P461 (1fkmA)I406 because G (3-10) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1fkmA 400 :QIDDVE T0547 462 :IM 1fkmA 407 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=74369 # 1lvmA.455.93 read from T0547.t04.many.frag # found chain 1lvmA in training set T0547 455 :GLEQNFPIM 1lvmA 86 :RMPKDFPPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=74370 # 1bc5A.455.185 read from T0547.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)P461 (1bc5A)E207 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1bc5A)S209 because Y (epsilon') conformation "forbidden" or filtered. T0547 455 :GLEQNF 1bc5A 201 :ELANYV T0547 462 :I 1bc5A 208 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=74372 # 1on3A.455.276 read from T0547.t04.many.frag # found chain 1on3A in template set T0547 455 :GLEQNFPIM 1on3A 278 :ELRDIVPID Number of specific fragments extracted= 1 number of extra gaps= 0 total=74373 # 1zbxB.455.47 read from T0547.t04.many.frag # found chain 1zbxB in template set T0547 455 :GLEQNFPIM 1zbxB 527 :AMIDQMNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=74374 # 1jiwI.455.48 read from T0547.t04.many.frag # found chain 1jiwI in training set T0547 455 :GLEQNFPIM 1jiwI 49 :CLTRWLPSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=74375 # 1u8xX.455.327 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)Q458 (1u8xX)Q308 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1u8xX)S309 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1u8xX)N312 Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1u8xX)N312 Warning: unaligning (T0547)M463 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1u8xX)S313 T0547 455 :GLE 1u8xX 305 :TRE T0547 460 :F 1u8xX 310 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=74377 # 1t6eX.456.187 read from T0547.t04.many.frag # found chain 1t6eX in training set T0547 456 :LEQNFPIMP 1t6eX 188 :FTQSMPYTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74378 # 1zvtA.456.127 read from T0547.t04.many.frag # found chain 1zvtA in training set Warning: unaligning (T0547)P461 (1zvtA)H629 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNF 1zvtA 624 :LPENA T0547 462 :IMP 1zvtA 630 :VMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74380 # 1nlnA.456.145 read from T0547.t04.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNF 1nlnA 146 :TMNLI T0547 462 :IMP 1nlnA 152 :GVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74382 # 2d1eA.456.30 read from T0547.t04.many.frag # found chain 2d1eA in training set T0547 456 :LEQNFPIMP 2d1eA 31 :SWQSLPLKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74383 # 4dpvZ.456.245 read from T0547.t04.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)P464 (4dpvZ)L254 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNFPIM 4dpvZ 246 :IENSVPVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=74384 # 1zn6A.456.200 read from T0547.t04.many.frag # found chain 1zn6A in training set Warning: unaligning (T0547)P461 (1zn6A)L206 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNF 1zn6A 201 :TRDFL T0547 462 :IMP 1zn6A 207 :PYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74386 # 2bbkL.456.93 read from T0547.t04.many.frag # found chain 2bbkL in template set Warning: unaligning (T0547)F460 (2bbkL)N104 because G (3-10) conformation "forbidden" or filtered. T0547 456 :LEQN 2bbkL 100 :PEFA T0547 461 :PIMP 2bbkL 105 :DIIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=74388 # 2b4vA.456.329 read from T0547.t04.many.frag # found chain 2b4vA in training set T0547 456 :LEQNFPIMP 2b4vA 349 :LPRYPDFSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74389 # 1ro7A.456.216 read from T0547.t04.many.frag # found chain 1ro7A in training set T0547 456 :LEQNFPIMP 1ro7A 217 :LANFIELAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74390 # 2fnuA.456.324 read from T0547.t04.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)P461 (2fnuA)N330 because L (left) conformation "forbidden" or filtered. T0547 456 :LEQNF 2fnuA 325 :YQQLF T0547 462 :IMP 2fnuA 331 :TAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74392 # 1vajA.456.88 read from T0547.t04.many.frag # found chain 1vajA in template set T0547 456 :LEQNFPIMP 1vajA 89 :DDPRFPPVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=74393 # 2a6aA.456.93 read from T0547.t04.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)N459 (2a6aA)D85 because L (left) conformation "forbidden" or filtered. T0547 456 :LEQ 2a6aA 82 :SPY T0547 460 :FPIMP 2a6aA 86 :IPVAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74395 # 1q0rA.456.217 read from T0547.t04.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)P461 (1q0rA)T223 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNF 1q0rA 218 :AHYSL T0547 462 :IMP 1q0rA 224 :LPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74397 # 1kaeA.456.373 read from T0547.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0547)N459 (1kaeA)T377 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1kaeA)G382 because Y (epsilon') conformation "forbidden" or filtered. T0547 456 :LEQ 1kaeA 374 :YTA T0547 460 :FPIM 1kaeA 378 :CSSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=74399 # 1tr9A.456.282 read from T0547.t04.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)P464 (1tr9A)E290 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNFPIM 1tr9A 282 :VLDNLPIM Number of specific fragments extracted= 1 number of extra gaps= 1 total=74400 # 1f06A.456.234 read from T0547.t04.many.frag # found chain 1f06A in template set Warning: unaligning (T0547)N459 (1f06A)E238 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1f06A)T240 because G (3-10) conformation "forbidden" or filtered. T0547 456 :LEQ 1f06A 235 :FDS T0547 460 :F 1f06A 239 :H T0547 462 :IMP 1f06A 241 :GMP Number of specific fragments extracted= 3 number of extra gaps= 2 total=74403 # 1j0dA.456.331 read from T0547.t04.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)F460 (1j0dA)F336 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1j0dA)T340 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQN 1j0dA 332 :YSSF T0547 461 :PIM 1j0dA 337 :PTK Number of specific fragments extracted= 2 number of extra gaps= 2 total=74405 # 1mtyD.456.381 read from T0547.t04.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)E457 (1mtyD)D397 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1mtyD)G401 because T (delta_L) conformation "forbidden" or filtered. T0547 456 :L 1mtyD 396 :E T0547 458 :QNF 1mtyD 398 :PSS T0547 462 :IMP 1mtyD 402 :FIP Number of specific fragments extracted= 3 number of extra gaps= 2 total=74408 # 1jakA.456.427 read from T0547.t04.many.frag # found chain 1jakA in training set T0547 456 :LEQNFPIMP 1jakA 422 :PAGYLPGAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74409 # 1bc5A.456.186 read from T0547.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)P461 (1bc5A)E207 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1bc5A)S210 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNF 1bc5A 202 :LANYV T0547 462 :IM 1bc5A 208 :FS Number of specific fragments extracted= 2 number of extra gaps= 2 total=74411 # 1jm1A.456.93 read from T0547.t04.many.frag # found chain 1jm1A in training set T0547 456 :LEQNFPIMP 1jm1A 140 :CVHLGCQLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74412 # 1k8wA.456.259 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)P464 (1k8wA)N255 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNFPIM 1k8wA 247 :PASDYPVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=74413 # 1bgc.456.51 read from T0547.t04.many.frag # found chain 1bgc in training set T0547 456 :LEQNFPIMP 1bgc 53 :HSLGIPQAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74414 # 1fr2B.456.79 read from T0547.t04.many.frag # found chain 1fr2B in training set Warning: unaligning (T0547)Q458 (1fr2B)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 456 :LE 1fr2B 80 :SK T0547 459 :NFPIMP 1fr2B 83 :YSPFTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74416 # 1zbxB.456.48 read from T0547.t04.many.frag # found chain 1zbxB in template set T0547 456 :LEQNFPIMP 1zbxB 528 :MIDQMNLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=74417 # 2b3nA.456.19 read from T0547.t04.many.frag # found chain 2b3nA in training set Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE in next template residue (2b3nA)K27 Warning: unaligning (T0547)M463 because of BadResidue code BAD_PEPTIDE at template residue (2b3nA)K27 T0547 456 :LEQNFP 2b3nA 20 :SKKGGK T0547 464 :P 2b3nA 28 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=74419 # 1uzeA.456.474 read from T0547.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)P461 (1uzeA)S516 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (1uzeA)S517 because L (left) conformation "forbidden" or filtered. T0547 456 :LEQNF 1uzeA 511 :KFHIP T0547 463 :MP 1uzeA 518 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74421 # 1fjjA.456.69 read from T0547.t04.many.frag # found chain 1fjjA in training set Warning: unaligning (T0547)P461 (1fjjA)R74 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (1fjjA)V75 because Y (epsilon') conformation "forbidden" or filtered. T0547 456 :LEQNF 1fjjA 69 :LPADT T0547 463 :MP 1fjjA 76 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74423 # 1kzqA.456.47 read from T0547.t04.many.frag # found chain 1kzqA in training set Warning: unaligning (T0547)Q458 (1kzqA)P49 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1kzqA)N50 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1kzqA)Q52 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LE 1kzqA 47 :YS T0547 460 :F 1kzqA 51 :R T0547 462 :IMP 1kzqA 53 :ICP Number of specific fragments extracted= 3 number of extra gaps= 2 total=74426 # 1l8aA.456.787 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)P461 (1l8aA)N793 because Y (epsilon') conformation "forbidden" or filtered. T0547 456 :LEQNF 1l8aA 788 :IAQVM T0547 462 :IMP 1l8aA 794 :DAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74428 # 1t6eX.457.188 read from T0547.t04.many.frag # found chain 1t6eX in training set T0547 457 :EQNFPIMPL 1t6eX 189 :TQSMPYTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74429 # 1zvtA.457.128 read from T0547.t04.many.frag # found chain 1zvtA in training set Warning: unaligning (T0547)P461 (1zvtA)H629 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNF 1zvtA 625 :PENA T0547 462 :IMPL 1zvtA 630 :VMPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74431 # 1nlnA.457.146 read from T0547.t04.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNF 1nlnA 147 :MNLI T0547 462 :IMPL 1nlnA 152 :GVPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=74433 # 2d1eA.457.31 read from T0547.t04.many.frag # found chain 2d1eA in training set T0547 457 :EQNFPIMPL 2d1eA 32 :WQSLPLKPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=74434 # 2bbkL.457.94 read from T0547.t04.many.frag # found chain 2bbkL in template set T0547 457 :EQNFPIMPL 2bbkL 101 :EFANDIIWC Number of specific fragments extracted= 1 number of extra gaps= 0 total=74435 # 4dpvZ.457.246 read from T0547.t04.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)P464 (4dpvZ)L254 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNFPIM 4dpvZ 247 :ENSVPVH T0547 465 :L 4dpvZ 255 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=74437 # 2a6aA.457.94 read from T0547.t04.many.frag # found chain 2a6aA in template set T0547 457 :EQNFPIMPL 2a6aA 83 :PYDIPVAPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74438 # 1oz2A.457.233 read from T0547.t04.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)N459 (1oz2A)G432 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1oz2A)V436 because P (beta_P) conformation "forbidden" or filtered. T0547 457 :EQ 1oz2A 430 :ET T0547 460 :FPI 1oz2A 433 :ASA T0547 464 :PL 1oz2A 437 :PT Number of specific fragments extracted= 3 number of extra gaps= 2 total=74441 # 1vajA.457.89 read from T0547.t04.many.frag # found chain 1vajA in template set T0547 457 :EQNFPIMPL 1vajA 90 :DPRFPPVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74442 # 1bgc.457.52 read from T0547.t04.many.frag # found chain 1bgc in training set Warning: unaligning (T0547)N459 (1bgc)G56 because L (left) conformation "forbidden" or filtered. T0547 457 :EQ 1bgc 54 :SL T0547 460 :FPIMPL 1bgc 57 :IPQAPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=74444 # 1zn6A.457.201 read from T0547.t04.many.frag # found chain 1zn6A in training set Warning: unaligning (T0547)P461 (1zn6A)L206 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1zn6A)Y208 because P (beta_P) conformation "forbidden" or filtered. T0547 457 :EQNF 1zn6A 202 :RDFL T0547 462 :I 1zn6A 207 :P T0547 464 :PL 1zn6A 209 :PA Number of specific fragments extracted= 3 number of extra gaps= 2 total=74447 # 1q0rA.457.218 read from T0547.t04.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)P461 (1q0rA)T223 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNF 1q0rA 219 :HYSL T0547 462 :IMPL 1q0rA 224 :LPPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74449 # 1jm1A.457.94 read from T0547.t04.many.frag # found chain 1jm1A in training set T0547 457 :EQNFPIMPL 1jm1A 141 :VHLGCQLPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74450 # 2b4vA.457.330 read from T0547.t04.many.frag # found chain 2b4vA in training set T0547 457 :EQNFPIMPL 2b4vA 350 :PRYPDFSPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74451 # 1fjjA.457.70 read from T0547.t04.many.frag # found chain 1fjjA in training set Warning: unaligning (T0547)P461 (1fjjA)R74 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (1fjjA)V75 because Y (epsilon') conformation "forbidden" or filtered. T0547 457 :EQNF 1fjjA 70 :PADT T0547 463 :MPL 1fjjA 76 :LPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=74453 # 1si2A.457.110 read from T0547.t04.many.frag # found chain 1si2A in template set T0547 457 :EQNFPIMPL 1si2A 331 :EQKHTYLPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74454 # 2fnuA.457.325 read from T0547.t04.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)P461 (2fnuA)N330 because L (left) conformation "forbidden" or filtered. T0547 457 :EQNF 2fnuA 326 :QQLF T0547 462 :IMPL 2fnuA 331 :TAPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=74456 # 1jakA.457.428 read from T0547.t04.many.frag # found chain 1jakA in training set Warning: unaligning (T0547)I462 (1jakA)G428 because T (delta_L) conformation "forbidden" or filtered. T0547 457 :EQNFP 1jakA 423 :AGYLP T0547 463 :MPL 1jakA 429 :APA Number of specific fragments extracted= 2 number of extra gaps= 1 total=74458 # 1kaeA.457.374 read from T0547.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0547)P464 (1kaeA)G382 because Y (epsilon') conformation "forbidden" or filtered. T0547 457 :EQNFPIM 1kaeA 375 :TATCSSL T0547 465 :L 1kaeA 383 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=74460 # 1fr2B.457.80 read from T0547.t04.many.frag # found chain 1fr2B in training set T0547 457 :EQNFPIMPL 1fr2B 81 :KGYSPFTPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=74461 # 1mtyD.457.382 read from T0547.t04.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)P461 (1mtyD)G401 because T (delta_L) conformation "forbidden" or filtered. T0547 457 :EQNF 1mtyD 397 :DPSS T0547 462 :IMPL 1mtyD 402 :FIPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=74463 # 1k8wA.457.260 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)P464 (1k8wA)N255 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNFPIM 1k8wA 248 :ASDYPVV T0547 465 :L 1k8wA 256 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=74465 # 1ro7A.457.217 read from T0547.t04.many.frag # found chain 1ro7A in training set T0547 457 :EQNFPIMPL 1ro7A 218 :ANFIELAPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=74466 # 1ryoA.457.226 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)N459 (1ryoA)D229 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F460 (1ryoA)N230 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1ryoA)T231 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQ 1ryoA 227 :CL T0547 462 :IMPL 1ryoA 232 :RKPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=74468 # 1yleA.457.271 read from T0547.t04.many.frag # found chain 1yleA in training set Warning: unaligning (T0547)P461 (1yleA)R274 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNF 1yleA 270 :IAQS T0547 462 :IMPL 1yleA 275 :VVPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=74470 # 2b3nA.457.20 read from T0547.t04.many.frag # found chain 2b3nA in training set Warning: unaligning (T0547)N459 (2b3nA)G23 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE in next template residue (2b3nA)K27 Warning: unaligning (T0547)M463 because of BadResidue code BAD_PEPTIDE at template residue (2b3nA)K27 T0547 457 :EQ 2b3nA 21 :KK T0547 460 :FP 2b3nA 24 :GK T0547 464 :PL 2b3nA 28 :PF Number of specific fragments extracted= 3 number of extra gaps= 2 total=74473 # 1tr9A.457.283 read from T0547.t04.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)P464 (1tr9A)E290 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNFPIM 1tr9A 283 :LDNLPIM T0547 465 :L 1tr9A 291 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=74475 # 1f06A.457.235 read from T0547.t04.many.frag # found chain 1f06A in template set Warning: unaligning (T0547)P461 (1f06A)T240 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L465 (1f06A)H244 because Y (epsilon') conformation "forbidden" or filtered. T0547 457 :EQNF 1f06A 236 :DSEH T0547 462 :IMP 1f06A 241 :GMP Number of specific fragments extracted= 2 number of extra gaps= 2 total=74477 # 1hx0A.457.280 read from T0547.t04.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 457 :EQNF 1hx0A 281 :GEGW T0547 462 :IMPL 1hx0A 286 :FMPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=74479 # 4bcl.457.236 read from T0547.t04.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)E457 because of BadResidue code BAD_PEPTIDE at template residue (4bcl)S237 T0547 458 :QNFPIMPL 4bcl 238 :RWTELFPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=74480 # 1t6eX.458.189 read from T0547.t04.many.frag # found chain 1t6eX in training set T0547 458 :QNFPIMPLD 1t6eX 190 :QSMPYTPLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=74481 # 1nlnA.458.147 read from T0547.t04.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNF 1nlnA 148 :NLI T0547 462 :IMPLD 1nlnA 152 :GVPNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=74483 # 1zvtA.458.129 read from T0547.t04.many.frag # found chain 1zvtA in training set Warning: unaligning (T0547)P461 (1zvtA)H629 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNF 1zvtA 626 :ENA T0547 462 :IMPLD 1zvtA 630 :VMPPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=74485 # 2d1eA.458.32 read from T0547.t04.many.frag # found chain 2d1eA in training set T0547 458 :QNFPIMPLD 2d1eA 33 :QSLPLKPYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=74486 # 2bbkL.458.95 read from T0547.t04.many.frag # found chain 2bbkL in template set Warning: unaligning (T0547)D466 (2bbkL)F110 because P (beta_P) conformation "forbidden" or filtered. T0547 458 :QNFPIMPL 2bbkL 102 :FANDIIWC Number of specific fragments extracted= 1 number of extra gaps= 1 total=74487 # 1oz2A.458.234 read from T0547.t04.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)N459 (1oz2A)G432 because T (delta_L) conformation "forbidden" or filtered. T0547 458 :Q 1oz2A 431 :T T0547 460 :FPIMPLD 1oz2A 433 :ASAVPTW Number of specific fragments extracted= 2 number of extra gaps= 1 total=74489 # 1ryoA.458.227 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)F460 (1ryoA)N230 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1ryoA)T231 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QN 1ryoA 228 :LD T0547 462 :IMPLD 1ryoA 232 :RKPVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=74491 # 1bgc.458.53 read from T0547.t04.many.frag # found chain 1bgc in training set Warning: unaligning (T0547)N459 (1bgc)G56 because L (left) conformation "forbidden" or filtered. T0547 458 :Q 1bgc 55 :L T0547 460 :FPIMPLD 1bgc 57 :IPQAPLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=74493 # 1q0rA.458.219 read from T0547.t04.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)P461 (1q0rA)T223 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNF 1q0rA 220 :YSL T0547 462 :IMPLD 1q0rA 224 :LPPPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=74495 # 4bcl.458.237 read from T0547.t04.many.frag # found chain 4bcl in template set T0547 458 :QNFPIMPLD 4bcl 238 :RWTELFPVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=74496 # 1vajA.458.90 read from T0547.t04.many.frag # found chain 1vajA in template set T0547 458 :QNFPIMPLD 1vajA 91 :PRFPPVKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=74497 # 4dpvZ.458.247 read from T0547.t04.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)P464 (4dpvZ)L254 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNFPIM 4dpvZ 248 :NSVPVH T0547 465 :LD 4dpvZ 255 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=74499 # 1hx0A.458.281 read from T0547.t04.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 458 :QNF 1hx0A 282 :EGW T0547 462 :IMPLD 1hx0A 286 :FMPSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=74501 # 2a6aA.458.95 read from T0547.t04.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)N459 (2a6aA)D85 because L (left) conformation "forbidden" or filtered. T0547 458 :Q 2a6aA 84 :Y T0547 460 :FPIMPLD 2a6aA 86 :IPVAPLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=74503 # 1jakA.458.429 read from T0547.t04.many.frag # found chain 1jakA in training set T0547 458 :QNFPIMPLD 1jakA 424 :GYLPGAPAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=74504 # 1zn6A.458.202 read from T0547.t04.many.frag # found chain 1zn6A in training set Warning: unaligning (T0547)P461 (1zn6A)L206 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1zn6A)Y208 because P (beta_P) conformation "forbidden" or filtered. T0547 458 :QNF 1zn6A 203 :DFL T0547 462 :I 1zn6A 207 :P T0547 464 :PLD 1zn6A 209 :PAD Number of specific fragments extracted= 3 number of extra gaps= 2 total=74507 # 1jm1A.458.95 read from T0547.t04.many.frag # found chain 1jm1A in training set Warning: unaligning (T0547)F460 (1jm1A)G144 because T (delta_L) conformation "forbidden" or filtered. T0547 458 :QN 1jm1A 142 :HL T0547 461 :PIMPLD 1jm1A 145 :CQLPAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=74509 # 2b4vA.458.331 read from T0547.t04.many.frag # found chain 2b4vA in training set Warning: unaligning (T0547)N459 (2b4vA)Y352 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :Q 2b4vA 351 :R T0547 460 :FPIMPLD 2b4vA 353 :PDFSPLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=74511 # 1si2A.458.111 read from T0547.t04.many.frag # found chain 1si2A in template set Warning: unaligning (T0547)F460 (1si2A)H334 because L (left) conformation "forbidden" or filtered. T0547 458 :QN 1si2A 332 :QK T0547 461 :PIMPLD 1si2A 335 :TYLPLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=74513 # 1fr2B.458.81 read from T0547.t04.many.frag # found chain 1fr2B in training set T0547 458 :QNFPIMPLD 1fr2B 82 :GYSPFTPKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=74514 # 1mtyD.458.383 read from T0547.t04.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)P461 (1mtyD)G401 because T (delta_L) conformation "forbidden" or filtered. T0547 458 :QNF 1mtyD 398 :PSS T0547 462 :IMPLD 1mtyD 402 :FIPLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=74516 # 1msk.458.240 read from T0547.t04.many.frag # found chain 1msk in template set Warning: unaligning (T0547)N459 (1msk)G1138 because T (delta_L) conformation "forbidden" or filtered. T0547 458 :Q 1msk 1137 :P T0547 460 :FPIMPLD 1msk 1139 :YPACPEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=74518 # 1fjjA.458.71 read from T0547.t04.many.frag # found chain 1fjjA in training set Warning: unaligning (T0547)P461 (1fjjA)R74 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (1fjjA)V75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D466 (1fjjA)G79 because T (delta_L) conformation "forbidden" or filtered. T0547 458 :QNF 1fjjA 71 :ADT T0547 463 :MPL 1fjjA 76 :LPQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=74520 # 1m65A.458.231 read from T0547.t04.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)P461 (1m65A)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 458 :QNF 1m65A 232 :ESR T0547 462 :IMPLD 1m65A 236 :MAPIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=74522 # 1kaeA.458.375 read from T0547.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0547)P464 (1kaeA)G382 because Y (epsilon') conformation "forbidden" or filtered. T0547 458 :QNFPIM 1kaeA 376 :ATCSSL T0547 465 :LD 1kaeA 383 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=74524 # 2fnuA.458.326 read from T0547.t04.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)P461 (2fnuA)N330 because L (left) conformation "forbidden" or filtered. T0547 458 :QNF 2fnuA 327 :QLF T0547 462 :IMPLD 2fnuA 331 :TAPLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=74526 # 1at0.458.10 read from T0547.t04.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)P461 (1at0)V271 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNF 1at0 268 :ESG T0547 462 :IMPLD 1at0 272 :RKPLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=74528 # 1k8wA.458.261 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)P464 (1k8wA)N255 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNFPIM 1k8wA 249 :SDYPVV T0547 465 :LD 1k8wA 256 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74530 # 2czrA.458.202 read from T0547.t04.many.frag # found chain 2czrA in template set T0547 458 :QNFPIMPLD 2czrA 195 :KFGGEVPMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=74531 1oxdA expands to /projects/compbio/data/pdb/1oxd.pdb.gz 1oxdA:Bad short name: C25 for alphabet: pdb_atoms Bad short name: C23 for alphabet: pdb_atoms Bad short name: O24 for alphabet: pdb_atoms Bad short name: C22 for alphabet: pdb_atoms Bad short name: N26 for alphabet: pdb_atoms Bad short name: C14 for alphabet: pdb_atoms Bad short name: N13 for alphabet: pdb_atoms Bad short name: C12 for alphabet: pdb_atoms Bad short name: C11 for alphabet: pdb_atoms Bad short name: C7 for alphabet: pdb_atoms Bad short name: C8 for alphabet: pdb_atoms Bad short name: N9 for alphabet: pdb_atoms Bad short name: C6 for alphabet: pdb_atoms Bad short name: C5 for alphabet: pdb_atoms Bad short name: C4 for alphabet: pdb_atoms Bad short name: C3 for alphabet: pdb_atoms Bad short name: C2 for alphabet: pdb_atoms Bad short name: C1 for alphabet: pdb_atoms Bad short name: C16 for alphabet: pdb_atoms Bad short name: O17 for alphabet: pdb_atoms Bad short name: N15 for alphabet: pdb_atoms Bad short name: C18 for alphabet: pdb_atoms # 1oxdA.458.66 read from T0547.t04.many.frag # adding 1oxdA to template set # found chain 1oxdA in template set Warning: unaligning (T0547)F460 (1oxdA)F71 because G (3-10) conformation "forbidden" or filtered. T0547 458 :QN 1oxdA 69 :QC T0547 461 :PIMPLD 1oxdA 72 :SRYPDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=74533 # 1nlnA.459.148 read from T0547.t04.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NF 1nlnA 149 :LI T0547 462 :IMPLDR 1nlnA 152 :GVPNSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=74535 # 1t6eX.459.190 read from T0547.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)N459 (1t6eX)S191 because G (3-10) conformation "forbidden" or filtered. T0547 460 :FPIMPLDR 1t6eX 192 :MPYTPLVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=74536 # 1zvtA.459.130 read from T0547.t04.many.frag # found chain 1zvtA in training set Warning: unaligning (T0547)P461 (1zvtA)H629 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NF 1zvtA 627 :NA T0547 462 :IMPLDR 1zvtA 630 :VMPPVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=74538 # 1ryoA.459.228 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)F460 (1ryoA)N230 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1ryoA)T231 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :N 1ryoA 229 :D T0547 462 :IMPLDR 1ryoA 232 :RKPVDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=74540 # 4bcl.459.238 read from T0547.t04.many.frag # found chain 4bcl in template set T0547 459 :NFPIMPLDR 4bcl 239 :WTELFPVEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=74541 # 1q0rA.459.220 read from T0547.t04.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)P461 (1q0rA)T223 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NF 1q0rA 221 :SL T0547 462 :IMPLDR 1q0rA 224 :LPPPSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=74543 # 1oz2A.459.235 read from T0547.t04.many.frag # found chain 1oz2A in training set T0547 459 :NFPIMPLDR 1oz2A 432 :GASAVPTWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74544 # 1bgc.459.54 read from T0547.t04.many.frag # found chain 1bgc in training set T0547 459 :NFPIMPLDR 1bgc 56 :GIPQAPLSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=74545 # 2bbkL.459.96 read from T0547.t04.many.frag # found chain 2bbkL in template set T0547 459 :NFPIMPLDR 2bbkL 103 :ANDIIWCFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=74546 # 2d1eA.459.33 read from T0547.t04.many.frag # found chain 2d1eA in training set T0547 459 :NFPIMPLDR 2d1eA 34 :SLPLKPYQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74547 # 1zn6A.459.203 read from T0547.t04.many.frag # found chain 1zn6A in training set Warning: unaligning (T0547)P461 (1zn6A)L206 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1zn6A)R212 because G (3-10) conformation "forbidden" or filtered. T0547 459 :NF 1zn6A 204 :FL T0547 462 :IMPLD 1zn6A 207 :PYPAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=74549 # 1m65A.459.232 read from T0547.t04.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)P461 (1m65A)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 459 :NF 1m65A 233 :SR T0547 462 :IMPLDR 1m65A 236 :MAPIAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=74551 # 1vajA.459.91 read from T0547.t04.many.frag # found chain 1vajA in template set T0547 459 :NFPIMPLDR 1vajA 92 :RFPPVKLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=74552 # 1hx0A.459.282 read from T0547.t04.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 459 :NF 1hx0A 283 :GW T0547 462 :IMPLDR 1hx0A 286 :FMPSDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=74554 # 1si2A.459.112 read from T0547.t04.many.frag # found chain 1si2A in template set Warning: unaligning (T0547)F460 (1si2A)H334 because L (left) conformation "forbidden" or filtered. T0547 459 :N 1si2A 333 :K T0547 461 :PIMPLDR 1si2A 335 :TYLPLEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=74556 # 1tjyA.459.276 read from T0547.t04.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)N459 (1tjyA)K301 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1tjyA)T303 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1tjyA 302 :V T0547 462 :IMPLDR 1tjyA 304 :VSPNSE Number of specific fragments extracted= 2 number of extra gaps= 2 total=74558 # 2a6aA.459.96 read from T0547.t04.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)N459 (2a6aA)D85 because L (left) conformation "forbidden" or filtered. T0547 460 :FPIMPLDR 2a6aA 86 :IPVAPLNS Number of specific fragments extracted= 1 number of extra gaps= 1 total=74559 # 1jakA.459.430 read from T0547.t04.many.frag # found chain 1jakA in training set T0547 459 :NFPIMPLDR 1jakA 425 :YLPGAPADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74560 # 1jm1A.459.96 read from T0547.t04.many.frag # found chain 1jm1A in training set Warning: unaligning (T0547)N459 (1jm1A)L143 because G (3-10) conformation "forbidden" or filtered. T0547 460 :FPIMPLDR 1jm1A 144 :GCQLPAQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=74561 # 1fr2B.459.82 read from T0547.t04.many.frag # found chain 1fr2B in training set T0547 459 :NFPIMPLDR 1fr2B 83 :YSPFTPKNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=74562 # 1at0.459.11 read from T0547.t04.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)F460 (1at0)G270 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1at0)V271 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :N 1at0 269 :S T0547 462 :IMPLDR 1at0 272 :RKPLGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=74564 # 1msk.459.241 read from T0547.t04.many.frag # found chain 1msk in template set Warning: unaligning (T0547)N459 (1msk)G1138 because T (delta_L) conformation "forbidden" or filtered. T0547 460 :FPIMPLDR 1msk 1139 :YPACPEHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=74565 # 1d8hA.459.1 read from T0547.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)N459 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d8hA)Y241 Warning: unaligning (T0547)F460 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d8hA)Y241 Warning: unaligning (T0547)P461 (1d8hA)R242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)V244 Warning: unaligning (T0547)M463 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)V244 T0547 464 :PLDR 1d8hA 245 :PIWA Number of specific fragments extracted= 1 number of extra gaps= 1 total=74566 # 1kaeA.459.376 read from T0547.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0547)P464 (1kaeA)G382 because Y (epsilon') conformation "forbidden" or filtered. T0547 459 :NFPIM 1kaeA 377 :TCSSL T0547 465 :LDR 1kaeA 383 :LAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=74568 # 4dpvZ.459.248 read from T0547.t04.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)P464 (4dpvZ)L254 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NFPIM 4dpvZ 249 :SVPVH T0547 465 :LDR 4dpvZ 255 :LRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=74570 1x89A expands to /projects/compbio/data/pdb/1x89.pdb.gz 1x89A:# 1x89A.459.6 read from T0547.t04.many.frag # adding 1x89A to template set # found chain 1x89A in template set T0547 459 :NFPIMPLDR 1x89A 7 :LIPAPPLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=74571 # 2b4vA.459.332 read from T0547.t04.many.frag # found chain 2b4vA in training set T0547 459 :NFPIMPLDR 2b4vA 352 :YPDFSPLYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=74572 # 1mtyD.459.384 read from T0547.t04.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)P461 (1mtyD)G401 because T (delta_L) conformation "forbidden" or filtered. T0547 459 :NF 1mtyD 399 :SS T0547 462 :IMPLDR 1mtyD 402 :FIPLMW Number of specific fragments extracted= 2 number of extra gaps= 1 total=74574 # 1m0dA.459.121 read from T0547.t04.many.frag # found chain 1m0dA in template set Warning: unaligning (T0547)P461 (1m0dA)K135 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1m0dA)R141 because G (3-10) conformation "forbidden" or filtered. T0547 459 :NF 1m0dA 133 :PK T0547 462 :IMPLD 1m0dA 136 :EVPFD Number of specific fragments extracted= 2 number of extra gaps= 2 total=74576 # 1zbxB.459.51 read from T0547.t04.many.frag # found chain 1zbxB in template set T0547 459 :NFPIMPLDR 1zbxB 531 :QMNLVKWND Number of specific fragments extracted= 1 number of extra gaps= 0 total=74577 # 1nlnA.460.149 read from T0547.t04.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1nlnA 150 :I T0547 462 :IMPLDRL 1nlnA 152 :GVPNSML Number of specific fragments extracted= 2 number of extra gaps= 1 total=74579 # 1ryoA.460.229 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)F460 (1ryoA)N230 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1ryoA)T231 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRL 1ryoA 232 :RKPVDEY Number of specific fragments extracted= 1 number of extra gaps= 1 total=74580 # 1t6eX.460.191 read from T0547.t04.many.frag # found chain 1t6eX in training set T0547 460 :FPIMPLDRL 1t6eX 192 :MPYTPLVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=74581 # 4bcl.460.239 read from T0547.t04.many.frag # found chain 4bcl in template set T0547 460 :FPIMPLDRL 4bcl 240 :TELFPVEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74582 # 1q0rA.460.221 read from T0547.t04.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)P461 (1q0rA)T223 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1q0rA 222 :L T0547 462 :IMPLDRL 1q0rA 224 :LPPPSRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=74584 # 1zvtA.460.131 read from T0547.t04.many.frag # found chain 1zvtA in training set Warning: unaligning (T0547)P461 (1zvtA)H629 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1zvtA 628 :A T0547 462 :IMPLDRL 1zvtA 630 :VMPPVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=74586 # 1oz2A.460.236 read from T0547.t04.many.frag # found chain 1oz2A in training set T0547 460 :FPIMPLDRL 1oz2A 433 :ASAVPTWAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=74587 # 1bgc.460.55 read from T0547.t04.many.frag # found chain 1bgc in training set T0547 460 :FPIMPLDRL 1bgc 57 :IPQAPLSSC Number of specific fragments extracted= 1 number of extra gaps= 0 total=74588 # 2bbkL.460.97 read from T0547.t04.many.frag # found chain 2bbkL in template set T0547 460 :FPIMPLDRL 2bbkL 104 :NDIIWCFGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74589 # 1m65A.460.233 read from T0547.t04.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)P461 (1m65A)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 460 :F 1m65A 234 :R T0547 462 :IMPLDRL 1m65A 236 :MAPIAEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=74591 # 1tjyA.460.277 read from T0547.t04.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)P461 (1tjyA)T303 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1tjyA 302 :V T0547 462 :IMPLDRL 1tjyA 304 :VSPNSEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=74593 # 1zn6A.460.204 read from T0547.t04.many.frag # found chain 1zn6A in training set Warning: unaligning (T0547)P461 (1zn6A)L206 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1zn6A 205 :L T0547 462 :IMPLDRL 1zn6A 207 :PYPADRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=74595 # 1at0.460.12 read from T0547.t04.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)F460 (1at0)G270 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1at0)V271 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRL 1at0 272 :RKPLGEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=74596 # 1si2A.460.113 read from T0547.t04.many.frag # found chain 1si2A in template set Warning: unaligning (T0547)F460 (1si2A)H334 because L (left) conformation "forbidden" or filtered. T0547 461 :PIMPLDRL 1si2A 335 :TYLPLEVC Number of specific fragments extracted= 1 number of extra gaps= 1 total=74597 # 1vajA.460.92 read from T0547.t04.many.frag # found chain 1vajA in template set T0547 460 :FPIMPLDRL 1vajA 93 :FPPVKLEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=74598 # 1d8hA.460.2 read from T0547.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)F460 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d8hA)Y241 Warning: unaligning (T0547)P461 (1d8hA)R242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)V244 Warning: unaligning (T0547)M463 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)V244 T0547 464 :PLDRL 1d8hA 245 :PIWAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=74599 # 1fr2B.460.83 read from T0547.t04.many.frag # found chain 1fr2B in training set T0547 460 :FPIMPLDRL 1fr2B 84 :SPFTPKNQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=74600 # 1gp0A.460.16 read from T0547.t04.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)F460 (1gp0A)G1524 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1gp0A)D1528 because E (beta_S) conformation "forbidden" or filtered. T0547 461 :PIM 1gp0A 1525 :HLF T0547 465 :LDRL 1gp0A 1529 :LSSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=74602 # 2d1eA.460.34 read from T0547.t04.many.frag # found chain 2d1eA in training set T0547 460 :FPIMPLDRL 2d1eA 35 :LPLKPYQLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74603 # 1n12A.460.12 read from T0547.t04.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)P461 (1n12A)Q25 because S (epsilon) conformation "forbidden" or filtered. T0547 460 :F 1n12A 24 :W T0547 462 :IMPLDRL 1n12A 26 :DVEIQTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=74605 # 1t82A.460.112 read from T0547.t04.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)M463 (1t82A)T106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. T0547 460 :FPI 1t82A 103 :WPD T0547 465 :LDRL 1t82A 108 :LSPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=74607 # 2a6aA.460.97 read from T0547.t04.many.frag # found chain 2a6aA in template set T0547 460 :FPIMPLDRL 2a6aA 86 :IPVAPLNSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=74608 # 1m0dA.460.122 read from T0547.t04.many.frag # found chain 1m0dA in template set Warning: unaligning (T0547)P461 (1m0dA)K135 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1m0dA 134 :K T0547 462 :IMPLDRL 1m0dA 136 :EVPFDRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=74610 # 1jm1A.460.97 read from T0547.t04.many.frag # found chain 1jm1A in training set Warning: unaligning (T0547)F460 (1jm1A)G144 because T (delta_L) conformation "forbidden" or filtered. T0547 461 :PIMPLDRL 1jm1A 145 :CQLPAQVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=74611 # 1x89A.460.7 read from T0547.t04.many.frag # found chain 1x89A in template set Warning: unaligning (T0547)R467 (1x89A)K15 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L468 (1x89A)V16 because D (zeta) conformation "forbidden" or filtered. T0547 460 :FPIMPLD 1x89A 8 :IPAPPLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=74612 # 1quqB.460.8 read from T0547.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)M463 (1quqB)I12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1quqB)N13 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :FPI 1quqB 9 :RSR T0547 465 :LDRL 1quqB 14 :AGML Number of specific fragments extracted= 2 number of extra gaps= 1 total=74614 # 1ta0A.460.111 read from T0547.t04.many.frag # found chain 1ta0A in template set T0547 460 :FPIMPLDRL 1ta0A 187 :NYVKDLSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74615 # 1zbxB.460.52 read from T0547.t04.many.frag # found chain 1zbxB in template set T0547 460 :FPIMPLDRL 1zbxB 532 :MNLVKWNDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=74616 # 1hx0A.460.283 read from T0547.t04.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 460 :F 1hx0A 284 :W T0547 462 :IMPLDRL 1hx0A 286 :FMPSDRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=74618 # 1kaeA.460.377 read from T0547.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0547)P464 (1kaeA)G382 because Y (epsilon') conformation "forbidden" or filtered. T0547 460 :FPIM 1kaeA 378 :CSSL T0547 465 :LDRL 1kaeA 383 :LADF Number of specific fragments extracted= 2 number of extra gaps= 1 total=74620 # 1nlnA.461.150 read from T0547.t04.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1nlnA 152 :GVPNSMLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=74621 # 1ryoA.461.230 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P461 (1ryoA)T231 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1ryoA 232 :RKPVDEYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=74622 # 4bcl.461.240 read from T0547.t04.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)R467 (4bcl)Q247 because G (3-10) conformation "forbidden" or filtered. T0547 461 :PIMPLD 4bcl 241 :ELFPVE T0547 468 :LD 4bcl 248 :LN Number of specific fragments extracted= 2 number of extra gaps= 1 total=74624 # 1t6eX.461.192 read from T0547.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)R467 (1t6eX)T199 because P (beta_P) conformation "forbidden" or filtered. T0547 461 :PIMPLD 1t6eX 193 :PYTPLV T0547 468 :LD 1t6eX 200 :KG Number of specific fragments extracted= 2 number of extra gaps= 1 total=74626 # 1q0rA.461.222 read from T0547.t04.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)P461 (1q0rA)T223 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1q0rA 224 :LPPPSRAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=74627 # 1bgc.461.56 read from T0547.t04.many.frag # found chain 1bgc in training set T0547 461 :PIMPLDRLD 1bgc 58 :PQAPLSSCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=74628 # 1zvtA.461.132 read from T0547.t04.many.frag # found chain 1zvtA in training set Warning: unaligning (T0547)P461 (1zvtA)H629 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1zvtA 630 :VMPPVVIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=74629 # 1quqB.461.9 read from T0547.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)M463 (1quqB)I12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1quqB)N13 because E (beta_S) conformation "forbidden" or filtered. T0547 461 :PI 1quqB 10 :SR T0547 465 :LDRLD 1quqB 14 :AGMLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=74631 # 1gp0A.461.17 read from T0547.t04.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)P464 (1gp0A)D1528 because E (beta_S) conformation "forbidden" or filtered. T0547 461 :PIM 1gp0A 1525 :HLF T0547 465 :LDRLD 1gp0A 1529 :LSSLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=74633 # 1t82A.461.113 read from T0547.t04.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)M463 (1t82A)T106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. T0547 461 :PI 1t82A 104 :PD T0547 465 :LDRLD 1t82A 108 :LSPLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=74635 # 2bbkL.461.98 read from T0547.t04.many.frag # found chain 2bbkL in template set Warning: unaligning (T0547)D466 (2bbkL)F110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (2bbkL)E113 because P (beta_P) conformation "forbidden" or filtered. T0547 461 :PIMPL 2bbkL 105 :DIIWC T0547 467 :RL 2bbkL 111 :GA Number of specific fragments extracted= 2 number of extra gaps= 2 total=74637 # 1oz2A.461.237 read from T0547.t04.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)D469 (1oz2A)K442 because E (beta_S) conformation "forbidden" or filtered. T0547 461 :PIMPLDRL 1oz2A 434 :SAVPTWAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=74638 # 1n12A.461.13 read from T0547.t04.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)D469 (1n12A)S33 because P (beta_P) conformation "forbidden" or filtered. T0547 461 :PIMPLDRL 1n12A 25 :QDVEIQTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=74639 # 1m65A.461.234 read from T0547.t04.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)P461 (1m65A)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1m65A 236 :MAPIAEFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=74640 # 1at0.461.13 read from T0547.t04.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)P461 (1at0)V271 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1at0 272 :RKPLGELS Number of specific fragments extracted= 1 number of extra gaps= 1 total=74641 # 1tjyA.461.278 read from T0547.t04.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)P461 (1tjyA)T303 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1tjyA 304 :VSPNSEQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=74642 # 1zn6A.461.205 read from T0547.t04.many.frag # found chain 1zn6A in training set Warning: unaligning (T0547)P461 (1zn6A)L206 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1zn6A)Y208 because P (beta_P) conformation "forbidden" or filtered. T0547 462 :I 1zn6A 207 :P T0547 464 :PLDRLD 1zn6A 209 :PADRLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=74644 # 1ta0A.461.112 read from T0547.t04.many.frag # found chain 1ta0A in template set T0547 461 :PIMPLDRLD 1ta0A 188 :YVKDLSRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=74645 # 1ze3C.461.90 read from T0547.t04.many.frag # found chain 1ze3C in template set T0547 461 :PIMPLDRLD 1ze3C 91 :PSMDKSKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=74646 # 1m22A.461.258 read from T0547.t04.many.frag # found chain 1m22A in training set T0547 461 :PIMPLDRLD 1m22A 296 :VYDYTARLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=74647 # 1vajA.461.93 read from T0547.t04.many.frag # found chain 1vajA in template set T0547 461 :PIMPLDRLD 1vajA 94 :PPVKLEEMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=74648 # 1d8hA.461.3 read from T0547.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)P461 (1d8hA)R242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)V244 Warning: unaligning (T0547)M463 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)V244 Warning: unaligning (T0547)D469 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d8hA)W251 T0547 464 :PLDRL 1d8hA 245 :PIWAQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=74649 # 1si2A.461.114 read from T0547.t04.many.frag # found chain 1si2A in template set T0547 461 :PIMPLDRLD 1si2A 335 :TYLPLEVCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=74650 # 1m0dA.461.123 read from T0547.t04.many.frag # found chain 1m0dA in template set Warning: unaligning (T0547)P461 (1m0dA)K135 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1m0dA 136 :EVPFDRLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=74651 # 1nxmA.461.47 read from T0547.t04.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)P461 (1nxmA)L48 because G (3-10) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1nxmA 49 :GFPESFFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=74652 # 1pii.461.386 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)P461 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)Q387 Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)R388 T0547 463 :MPLDRLD 1pii 389 :FDWSLLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=74653 # 1xgkA.461.274 read from T0547.t04.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)D469 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xgkA)P309 T0547 461 :PIMPLDRL 1xgkA 275 :PYFPLPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=74654 # 1zbxB.461.53 read from T0547.t04.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)M463 (1zbxB)V535 because P (beta_P) conformation "forbidden" or filtered. T0547 461 :PI 1zbxB 533 :NL T0547 464 :PLDRLD 1zbxB 536 :KWNDFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=74656 # 1msk.461.243 read from T0547.t04.many.frag # found chain 1msk in template set T0547 461 :PIMPLDRLD 1msk 1140 :PACPEHTEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=74657 # 2a6aA.461.98 read from T0547.t04.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)D466 (2a6aA)N92 because P (beta_P) conformation "forbidden" or filtered. T0547 461 :PIMPL 2a6aA 87 :PVAPL T0547 467 :RLD 2a6aA 93 :SFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=74659 # 1nlnA.462.151 read from T0547.t04.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)E470 (1nlnA)S160 because P (beta_P) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1nlnA 152 :GVPNSMLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=74660 # 1ryoA.462.231 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 462 :IMPLDRLDE 1ryoA 232 :RKPVDEYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=74661 # 1t6eX.462.193 read from T0547.t04.many.frag # found chain 1t6eX in training set T0547 462 :IMPLDRLDE 1t6eX 194 :YTPLVTKGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=74662 # 4bcl.462.241 read from T0547.t04.many.frag # found chain 4bcl in template set T0547 462 :IMPLDRLDE 4bcl 242 :LFPVEQLNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=74663 # 1gp0A.462.18 read from T0547.t04.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)P464 (1gp0A)D1528 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1gp0A)S1533 because P (beta_P) conformation "forbidden" or filtered. T0547 462 :IM 1gp0A 1526 :LF T0547 465 :LDRL 1gp0A 1529 :LSSL T0547 470 :E 1gp0A 1534 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=74666 # 1t82A.462.114 read from T0547.t04.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)M463 (1t82A)T106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :I 1t82A 105 :D T0547 465 :LDRLDE 1t82A 108 :LSPLQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=74668 # 1q0rA.462.223 read from T0547.t04.many.frag # found chain 1q0rA in training set T0547 462 :IMPLDRLDE 1q0rA 224 :LPPPSRAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=74669 # 1bgc.462.57 read from T0547.t04.many.frag # found chain 1bgc in training set Warning: unaligning (T0547)D469 (1bgc)S66 because P (beta_P) conformation "forbidden" or filtered. T0547 462 :IMPLDRL 1bgc 59 :QAPLSSC T0547 470 :E 1bgc 67 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=74671 # 1quqB.462.10 read from T0547.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)M463 (1quqB)I12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1quqB)N13 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :I 1quqB 11 :R T0547 465 :LDRLDE 1quqB 14 :AGMLAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=74673 # 1n12A.462.14 read from T0547.t04.many.frag # found chain 1n12A in template set T0547 462 :IMPLDRLDE 1n12A 26 :DVEIQTLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=74674 # 1m65A.462.235 read from T0547.t04.many.frag # found chain 1m65A in training set T0547 462 :IMPLDRLDE 1m65A 236 :MAPIAEFAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=74675 # 2bbkL.462.99 read from T0547.t04.many.frag # found chain 2bbkL in template set Warning: unaligning (T0547)R467 (2bbkL)G111 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (2bbkL)E113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (2bbkL)D114 because L (left) conformation "forbidden" or filtered. T0547 462 :IMPLD 2bbkL 106 :IIWCF T0547 468 :L 2bbkL 112 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=74677 # 1tjyA.462.279 read from T0547.t04.many.frag # found chain 1tjyA in training set T0547 462 :IMPLDRLDE 1tjyA 304 :VSPNSEQGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=74678 # 2exrA.462.298 read from T0547.t04.many.frag # found chain 2exrA in training set T0547 462 :IMPLDRLDE 2exrA 299 :EFDPTRLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=74679 # 1ze3C.462.91 read from T0547.t04.many.frag # found chain 1ze3C in template set T0547 462 :IMPLDRLDE 1ze3C 92 :SMDKSKLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=74680 # 1nxmA.462.48 read from T0547.t04.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)I462 (1nxmA)G49 because T (delta_L) conformation "forbidden" or filtered. T0547 463 :MPLDRLDE 1nxmA 50 :FPESFFAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=74681 # 1at0.462.14 read from T0547.t04.many.frag # found chain 1at0 in template set T0547 462 :IMPLDRLDE 1at0 272 :RKPLGELSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=74682 # 1m22A.462.259 read from T0547.t04.many.frag # found chain 1m22A in training set T0547 462 :IMPLDRLDE 1m22A 297 :YDYTARLDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74683 # 1xi1A.462.230 read from T0547.t04.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)P464 (1xi1A)L233 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1xi1A)K238 because P (beta_P) conformation "forbidden" or filtered. T0547 462 :IM 1xi1A 231 :TW T0547 465 :LDRL 1xi1A 234 :NDRF T0547 470 :E 1xi1A 239 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=74686 # 2a5zA.462.105 read from T0547.t04.many.frag # found chain 2a5zA in template set T0547 462 :IMPLDRLDE 2a5zA 106 :GMLMAIFPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=74687 # 1zvtA.462.133 read from T0547.t04.many.frag # found chain 1zvtA in training set T0547 462 :IMPLDRLDE 1zvtA 630 :VMPPVVIED Number of specific fragments extracted= 1 number of extra gaps= 0 total=74688 # 1pii.462.387 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)R388 Warning: unaligning (T0547)D469 (1pii)N395 because P (beta_P) conformation "forbidden" or filtered. T0547 463 :MPLDRL 1pii 389 :FDWSLL T0547 470 :E 1pii 396 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=74690 # 1oz2A.462.238 read from T0547.t04.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)D469 (1oz2A)K442 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 because of BadResidue code BAD_PEPTIDE in next template residue (1oz2A)R444 T0547 462 :IMPLDRL 1oz2A 435 :AVPTWAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=74691 # 1zbxB.462.54 read from T0547.t04.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)M463 (1zbxB)V535 because P (beta_P) conformation "forbidden" or filtered. T0547 462 :I 1zbxB 534 :L T0547 464 :PLDRLDE 1zbxB 536 :KWNDFKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=74693 # 1txvA.462.359 read from T0547.t04.many.frag # found chain 1txvA in template set T0547 462 :IMPLDRLDE 1txvA 360 :IAPLGDLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=74694 # 1d8hA.462.4 read from T0547.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)V244 Warning: unaligning (T0547)M463 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)V244 Warning: unaligning (T0547)D469 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1d8hA)W251 Warning: unaligning (T0547)E470 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1d8hA)W251 T0547 464 :PLDRL 1d8hA 245 :PIWAQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=74695 # 1ta0A.462.113 read from T0547.t04.many.frag # found chain 1ta0A in template set T0547 462 :IMPLDRLDE 1ta0A 189 :VKDLSRLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=74696 # 1jsdA.462.126 read from T0547.t04.many.frag # found chain 1jsdA in training set Warning: unaligning (T0547)P464 (1jsdA)T129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1jsdA)S134 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1jsdA)D135 because L (left) conformation "forbidden" or filtered. T0547 462 :IM 1jsdA 127 :SG T0547 465 :LDRL 1jsdA 130 :SSAC Number of specific fragments extracted= 2 number of extra gaps= 2 total=74698 # 1bc5A.462.192 read from T0547.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)P464 (1bc5A)S210 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D466 (1bc5A)N212 because P (beta_P) conformation "forbidden" or filtered. T0547 462 :IM 1bc5A 208 :FS T0547 465 :L 1bc5A 211 :V T0547 467 :RLDE 1bc5A 213 :LLEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=74701 # 1xmxA.462.361 read from T0547.t04.many.frag # found chain 1xmxA in template set T0547 462 :IMPLDRLDE 1xmxA 360 :LIGPDELKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=74702 # 1ryoA.463.232 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 463 :MPLDRLDEE 1ryoA 233 :KPVDEYKDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=74703 # 1nlnA.463.152 read from T0547.t04.many.frag # found chain 1nlnA in training set T0547 463 :MPLDRLDEE 1nlnA 153 :VPNSMLNSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74704 # 1t6eX.463.194 read from T0547.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)D466 (1t6eX)V198 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1t6eX)G201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1t6eX)S203 because E (beta_S) conformation "forbidden" or filtered. T0547 463 :MPL 1t6eX 195 :TPL T0547 467 :RL 1t6eX 199 :TK T0547 470 :E 1t6eX 202 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=74707 # 4bcl.463.242 read from T0547.t04.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)E470 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. T0547 463 :MPLDRLD 4bcl 243 :FPVEQLN T0547 471 :E 4bcl 251 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=74709 # 1t82A.463.115 read from T0547.t04.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)M463 (1t82A)T106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1t82A)G114 because L (left) conformation "forbidden" or filtered. T0547 465 :LDRLDE 1t82A 108 :LSPLQR Number of specific fragments extracted= 1 number of extra gaps= 2 total=74710 # 1bgc.463.58 read from T0547.t04.many.frag # found chain 1bgc in training set T0547 463 :MPLDRLDEE 1bgc 60 :APLSSCSSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=74711 # 1quqB.463.11 read from T0547.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)M463 (1quqB)I12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1quqB)N13 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1quqB 14 :AGMLAQF Number of specific fragments extracted= 1 number of extra gaps= 1 total=74712 # 1n12A.463.15 read from T0547.t04.many.frag # found chain 1n12A in template set T0547 463 :MPLDRLDEE 1n12A 27 :VEIQTLSQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=74713 # 1gp0A.463.19 read from T0547.t04.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)P464 (1gp0A)D1528 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1gp0A)G1534 because S (epsilon) conformation "forbidden" or filtered. T0547 463 :M 1gp0A 1527 :F T0547 465 :LDRLD 1gp0A 1529 :LSSLS T0547 471 :E 1gp0A 1535 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=74716 # 2exrA.463.299 read from T0547.t04.many.frag # found chain 2exrA in training set T0547 463 :MPLDRLDEE 2exrA 300 :FDPTRLPQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=74717 # 1q0rA.463.224 read from T0547.t04.many.frag # found chain 1q0rA in training set T0547 463 :MPLDRLDEE 1q0rA 225 :PPPSRAAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74718 # 1xi1A.463.231 read from T0547.t04.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)P464 (1xi1A)L233 because E (beta_S) conformation "forbidden" or filtered. T0547 463 :M 1xi1A 232 :W T0547 465 :LDRLDEE 1xi1A 234 :NDRFKEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=74720 # 1m65A.463.236 read from T0547.t04.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)E471 because last residue in template chain is (1m65A)L245 T0547 463 :MPLDRLDE 1m65A 237 :APIAEFAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=74721 # 2bj0A.463.121 read from T0547.t04.many.frag # found chain 2bj0A in template set T0547 463 :MPLDRLDEE 2bj0A 122 :CDLINVDTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=74722 # 1m22A.463.260 read from T0547.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)R467 (1m22A)R302 because G (3-10) conformation "forbidden" or filtered. T0547 463 :MPLD 1m22A 298 :DYTA T0547 468 :LDEE 1m22A 303 :LDPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=74724 # 2a5zA.463.106 read from T0547.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)L468 (2a5zA)F112 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (2a5zA)P113 because P (beta_P) conformation "forbidden" or filtered. T0547 463 :MPLDR 2a5zA 107 :MLMAI T0547 470 :EE 2a5zA 114 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=74726 # 2bbkL.463.100 read from T0547.t04.many.frag # found chain 2bbkL in template set Warning: unaligning (T0547)D469 (2bbkL)E113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (2bbkL)D114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (2bbkL)D115 because L (left) conformation "forbidden" or filtered. T0547 463 :MPLDRL 2bbkL 107 :IWCFGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=74727 # 1nxmA.463.49 read from T0547.t04.many.frag # found chain 1nxmA in training set T0547 463 :MPLDRLDEE 1nxmA 50 :FPESFFAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=74728 # 1dzkA.463.23 read from T0547.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)P464 (1dzkA)D25 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1dzkA)N32 because L (left) conformation "forbidden" or filtered. T0547 463 :M 1dzkA 24 :S T0547 465 :LDRLDE 1dzkA 26 :LEKIGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=74730 # 1bc5A.463.193 read from T0547.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)M463 (1bc5A)S209 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1bc5A)S210 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1bc5A)Q217 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDE 1bc5A 211 :VNLLEK Number of specific fragments extracted= 1 number of extra gaps= 2 total=74731 # 1at0.463.15 read from T0547.t04.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)E471 (1at0)G281 because T (delta_L) conformation "forbidden" or filtered. T0547 463 :MPLDRLDE 1at0 273 :KPLGELSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=74732 # 1jsdA.463.127 read from T0547.t04.many.frag # found chain 1jsdA in training set Warning: unaligning (T0547)P464 (1jsdA)T129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1jsdA)S134 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1jsdA)S136 because Y (epsilon') conformation "forbidden" or filtered. T0547 463 :M 1jsdA 128 :G T0547 465 :LDRL 1jsdA 130 :SSAC T0547 470 :E 1jsdA 135 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=74735 # 1pii.463.388 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)E470 (1pii)G396 because T (delta_L) conformation "forbidden" or filtered. T0547 463 :MPLDRLD 1pii 389 :FDWSLLN T0547 471 :E 1pii 397 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=74737 # 1ze3C.463.92 read from T0547.t04.many.frag # found chain 1ze3C in template set T0547 463 :MPLDRLDEE 1ze3C 93 :MDKSKLTEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=74738 # 1txvA.463.360 read from T0547.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0547)E470 (1txvA)R368 because L (left) conformation "forbidden" or filtered. T0547 463 :MPLDRLD 1txvA 361 :APLGDLD T0547 471 :E 1txvA 369 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=74740 # 1tjyA.463.280 read from T0547.t04.many.frag # found chain 1tjyA in training set T0547 463 :MPLDRLDEE 1tjyA 305 :SPNSEQGYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=74741 # 1vpmA.463.16 read from T0547.t04.many.frag # found chain 1vpmA in training set T0547 463 :MPLDRLDEE 1vpmA 5 :YPVERSRTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=74742 # 1dmuA.463.195 read from T0547.t04.many.frag # found chain 1dmuA in template set Warning: unaligning (T0547)E471 (1dmuA)G204 because T (delta_L) conformation "forbidden" or filtered. T0547 463 :MPLDRLDE 1dmuA 196 :PPLYILSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=74743 # 1z70X.463.33 read from T0547.t04.many.frag # found chain 1z70X in training set T0547 463 :MPLDRLDEE 1z70X 1106 :PQIKQDGEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74744 # 1wa5C.463.895 read from T0547.t04.many.frag # found chain 1wa5C in template set Warning: unaligning (T0547)D469 (1wa5C)S902 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1wa5C)K904 because P (beta_P) conformation "forbidden" or filtered. T0547 463 :MPLDRL 1wa5C 896 :SKLVSI T0547 470 :E 1wa5C 903 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=74746 # 1ryoA.464.233 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)R467 (1ryoA)E237 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLD 1ryoA 234 :PVD T0547 468 :LDEE 1ryoA 238 :YKDC Number of specific fragments extracted= 2 number of extra gaps= 2 total=74748 # 4bcl.464.243 read from T0547.t04.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)E470 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (4bcl)A252 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRLD 4bcl 244 :PVEQLN T0547 471 :E 4bcl 251 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=74750 # 1t82A.464.116 read from T0547.t04.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1t82A 108 :LSPLQRG Number of specific fragments extracted= 1 number of extra gaps= 2 total=74751 # 1nlnA.464.153 read from T0547.t04.many.frag # found chain 1nlnA in training set T0547 464 :PLDRLDEEP 1nlnA 154 :PNSMLNSPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=74752 # 1quqB.464.12 read from T0547.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)P464 (1quqB)N13 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 1quqB 14 :AGMLAQFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=74753 # 2exrA.464.300 read from T0547.t04.many.frag # found chain 2exrA in training set Warning: unaligning (T0547)D469 (2exrA)P306 because P (beta_P) conformation "forbidden" or filtered. T0547 464 :PLDRL 2exrA 301 :DPTRL T0547 470 :EEP 2exrA 307 :QSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=74755 # 1t6eX.464.195 read from T0547.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)D466 (1t6eX)V198 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1t6eX)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 464 :PL 1t6eX 196 :PL T0547 467 :RLD 1t6eX 199 :TKG T0547 471 :EP 1t6eX 203 :SP Number of specific fragments extracted= 3 number of extra gaps= 2 total=74758 # 1bgc.464.59 read from T0547.t04.many.frag # found chain 1bgc in training set Warning: unaligning (T0547)P472 (1bgc)S69 because G (3-10) conformation "forbidden" or filtered. T0547 464 :PLDRLDEE 1bgc 61 :PLSSCSSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=74759 # 1n12A.464.16 read from T0547.t04.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)P472 (1n12A)G36 because S (epsilon) conformation "forbidden" or filtered. T0547 464 :PLDRLDEE 1n12A 28 :EIQTLSQN Number of specific fragments extracted= 1 number of extra gaps= 1 total=74760 # 1xi1A.464.232 read from T0547.t04.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)P464 (1xi1A)L233 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 1xi1A 234 :NDRFKEKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=74761 # 1gp0A.464.20 read from T0547.t04.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)P464 (1gp0A)D1528 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 1gp0A 1529 :LSSLSGRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=74762 # 1q0rA.464.225 read from T0547.t04.many.frag # found chain 1q0rA in training set T0547 464 :PLDRLDEEP 1q0rA 226 :PPSRAAELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=74763 # 1bc5A.464.194 read from T0547.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)P464 (1bc5A)S210 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 1bc5A 211 :VNLLEKQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=74764 # 1m22A.464.261 read from T0547.t04.many.frag # found chain 1m22A in training set T0547 464 :PLDRLDEEP 1m22A 299 :YTARLDPQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=74765 # 2bj0A.464.122 read from T0547.t04.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)R467 (2bj0A)N126 because G (3-10) conformation "forbidden" or filtered. T0547 464 :PLD 2bj0A 123 :DLI T0547 468 :LDEEP 2bj0A 127 :VDTEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74767 # 1jsdA.464.128 read from T0547.t04.many.frag # found chain 1jsdA in training set Warning: unaligning (T0547)P464 (1jsdA)T129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1jsdA)S134 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1jsdA)D135 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1jsdA)F137 because Y (epsilon') conformation "forbidden" or filtered. T0547 465 :LDRL 1jsdA 130 :SSAC T0547 471 :E 1jsdA 136 :S Number of specific fragments extracted= 2 number of extra gaps= 3 total=74769 # 1dzkA.464.24 read from T0547.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)P464 (1dzkA)D25 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1dzkA)K28 because G (3-10) conformation "forbidden" or filtered. T0547 465 :LD 1dzkA 26 :LE T0547 468 :LDEEP 1dzkA 29 :IGENA Number of specific fragments extracted= 2 number of extra gaps= 2 total=74771 # 2a5zA.464.107 read from T0547.t04.many.frag # found chain 2a5zA in template set T0547 464 :PLDRLDEEP 2a5zA 108 :LMAIFPKES Number of specific fragments extracted= 1 number of extra gaps= 0 total=74772 # 1nxmA.464.50 read from T0547.t04.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)E471 (1nxmA)G58 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1nxmA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRLDE 1nxmA 51 :PESFFAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=74773 # 1vqoA.464.28 read from T0547.t04.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)E470 (1vqoA)D34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1vqoA)G35 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vqoA)D36 because T (delta_L) conformation "forbidden" or filtered. T0547 464 :PLDRLD 1vqoA 28 :EHRKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=74774 # 1wa5C.464.896 read from T0547.t04.many.frag # found chain 1wa5C in template set Warning: unaligning (T0547)E470 (1wa5C)E903 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1wa5C)K904 because P (beta_P) conformation "forbidden" or filtered. T0547 464 :PLDRLD 1wa5C 897 :KLVSIS T0547 472 :P 1wa5C 905 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=74776 # 1ze3C.464.93 read from T0547.t04.many.frag # found chain 1ze3C in template set Warning: unaligning (T0547)P472 (1ze3C)T102 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRLDEE 1ze3C 94 :DKSKLTEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=74777 # 1z70X.464.34 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)D469 (1z70X)G1112 because L (left) conformation "forbidden" or filtered. T0547 464 :PLDRL 1z70X 1107 :QIKQD T0547 470 :EEP 1z70X 1113 :EAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74779 # 1dmuA.464.196 read from T0547.t04.many.frag # found chain 1dmuA in template set Warning: unaligning (T0547)E471 (1dmuA)G204 because T (delta_L) conformation "forbidden" or filtered. T0547 464 :PLDRLDE 1dmuA 197 :PLYILSD T0547 472 :P 1dmuA 205 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=74781 # 2bbkL.464.101 read from T0547.t04.many.frag # found chain 2bbkL in template set Warning: unaligning (T0547)E471 (2bbkL)D115 because L (left) conformation "forbidden" or filtered. T0547 464 :PLDRLDE 2bbkL 108 :WCFGAED T0547 472 :P 2bbkL 116 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=74783 # 1ikoP.464.73 read from T0547.t04.many.frag # found chain 1ikoP in template set Warning: unaligning (T0547)P464 (1ikoP)N103 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1ikoP)D110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ikoP)V111 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLD 1ikoP 104 :CARPD Number of specific fragments extracted= 1 number of extra gaps= 2 total=74784 # 1vp4A.464.377 read from T0547.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)E471 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vp4A)D374 Warning: unaligning (T0547)P472 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vp4A)D374 T0547 464 :PLDRLDE 1vp4A 366 :PGRVFKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=74785 # 1tjyA.464.281 read from T0547.t04.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)E471 (1tjyA)H313 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1tjyA)Y314 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRLDE 1tjyA 306 :PNSEQGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=74786 # 1pii.464.389 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)D469 (1pii)N395 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1pii)G396 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1pii)Q397 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRL 1pii 390 :DWSLL T0547 472 :P 1pii 398 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=74788 # 1f8vA.464.211 read from T0547.t04.many.frag # found chain 1f8vA in template set Warning: unaligning (T0547)P464 (1f8vA)G218 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1f8vA)R223 because Y (epsilon') conformation "forbidden" or filtered. T0547 465 :LDRL 1f8vA 219 :LRGI T0547 470 :EEP 1f8vA 224 :PLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=74790 # 1ryoA.465.234 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1ryoA 235 :VDEYKDC T0547 473 :T 1ryoA 243 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=74792 # 4bcl.465.244 read from T0547.t04.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)E470 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (4bcl)A252 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLD 4bcl 245 :VEQLN T0547 471 :E 4bcl 251 :P T0547 473 :T 4bcl 253 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=74795 # 1t82A.465.117 read from T0547.t04.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)E471 (1t82A)G114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDE 1t82A 108 :LSPLQR T0547 473 :T 1t82A 116 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=74797 # 1quqB.465.13 read from T0547.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)T473 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 1quqB 14 :AGMLAQFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=74798 # 2exrA.465.301 read from T0547.t04.many.frag # found chain 2exrA in training set Warning: unaligning (T0547)D469 (2exrA)P306 because P (beta_P) conformation "forbidden" or filtered. T0547 465 :LDRL 2exrA 302 :PTRL T0547 470 :EEPT 2exrA 307 :QSCG Number of specific fragments extracted= 2 number of extra gaps= 1 total=74800 # 1xi1A.465.233 read from T0547.t04.many.frag # found chain 1xi1A in template set T0547 465 :LDRLDEEPT 1xi1A 234 :NDRFKEKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=74801 # 1t6eX.465.196 read from T0547.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)E470 (1t6eX)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 465 :LDRLD 1t6eX 197 :LVTKG T0547 471 :EPT 1t6eX 203 :SPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=74803 # 1bc5A.465.195 read from T0547.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D466 (1bc5A)N212 because P (beta_P) conformation "forbidden" or filtered. T0547 465 :L 1bc5A 211 :V T0547 467 :RLDEEPT 1bc5A 213 :LLEKQYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=74805 # 2bj0A.465.123 read from T0547.t04.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)T473 (2bj0A)G132 because S (epsilon) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 2bj0A 124 :LINVDTEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=74806 # 1n12A.465.17 read from T0547.t04.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)P472 (1n12A)G36 because S (epsilon) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1n12A 29 :IQTLSQN T0547 473 :T 1n12A 37 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=74808 # 1z70X.465.35 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)D469 (1z70X)G1112 because L (left) conformation "forbidden" or filtered. T0547 465 :LDRL 1z70X 1108 :IKQD T0547 470 :EEPT 1z70X 1113 :EAPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=74810 # 1jsdA.465.129 read from T0547.t04.many.frag # found chain 1jsdA in training set Warning: unaligning (T0547)E470 (1jsdA)D135 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1jsdA)F137 because Y (epsilon') conformation "forbidden" or filtered. T0547 465 :LDRLD 1jsdA 130 :SSACS T0547 471 :E 1jsdA 136 :S T0547 473 :T 1jsdA 138 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=74813 # 1gp0A.465.21 read from T0547.t04.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)T473 (1gp0A)G1537 because S (epsilon) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 1gp0A 1529 :LSSLSGRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=74814 # 1vqoA.465.29 read from T0547.t04.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)E470 (1vqoA)D34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vqoA)D36 because T (delta_L) conformation "forbidden" or filtered. T0547 465 :LDRLD 1vqoA 29 :HRKVE T0547 471 :E 1vqoA 35 :G T0547 473 :T 1vqoA 37 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=74817 # 1dzkA.465.25 read from T0547.t04.many.frag # found chain 1dzkA in training set T0547 465 :LDRLDEEPT 1dzkA 26 :LEKIGENAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74818 # 1qyrA.465.161 read from T0547.t04.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)E470 (1qyrA)P183 because C (cis) conformation "forbidden" or filtered. T0547 465 :LDRLD 1qyrA 178 :PSAFT T0547 471 :EPT 1qyrA 184 :PPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=74820 # 1q0rA.465.226 read from T0547.t04.many.frag # found chain 1q0rA in training set T0547 465 :LDRLDEEPT 1q0rA 227 :PSRAAELRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=74821 # 2a5zA.465.108 read from T0547.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)D469 (2a5zA)P113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (2a5zA)E117 because L (left) conformation "forbidden" or filtered. T0547 465 :LDRL 2a5zA 109 :MAIF T0547 470 :EEP 2a5zA 114 :KES Number of specific fragments extracted= 2 number of extra gaps= 2 total=74823 # 1nxmA.465.51 read from T0547.t04.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)E471 (1nxmA)G58 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1nxmA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDE 1nxmA 52 :ESFFAE T0547 473 :T 1nxmA 60 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=74825 # 1nlnA.465.154 read from T0547.t04.many.frag # found chain 1nlnA in training set T0547 465 :LDRLDEEPT 1nlnA 155 :NSMLNSPQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=74826 # 1bgc.465.60 read from T0547.t04.many.frag # found chain 1bgc in training set Warning: unaligning (T0547)D469 (1bgc)S66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1bgc)S69 because G (3-10) conformation "forbidden" or filtered. T0547 465 :LDRL 1bgc 62 :LSSC T0547 470 :EE 1bgc 67 :SQ T0547 473 :T 1bgc 70 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=74829 # 1m22A.465.262 read from T0547.t04.many.frag # found chain 1m22A in training set T0547 465 :LDRLDEEPT 1m22A 300 :TARLDPQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74830 # 1wa5C.465.897 read from T0547.t04.many.frag # found chain 1wa5C in template set T0547 465 :LDRLDEEPT 1wa5C 898 :LVSISEKPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=74831 # 2b5gA.465.42 read from T0547.t04.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R467 (2b5gA)G45 because G (3-10) conformation "forbidden" or filtered. T0547 465 :LD 2b5gA 43 :ED T0547 468 :LDEEPT 2b5gA 46 :FGEHPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=74833 # 1vp6A.465.44 read from T0547.t04.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)D469 (1vp6A)G266 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRL 1vp6A 262 :ICRI T0547 470 :EE 1vp6A 267 :EP T0547 473 :T 1vp6A 270 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=74836 # 2f8lA.465.286 read from T0547.t04.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)E470 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2f8lA)Q282 Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)Q282 Warning: unaligning (T0547)T473 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)A283 T0547 465 :LDRLD 2f8lA 275 :ETLFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=74837 # 1ze3C.465.94 read from T0547.t04.many.frag # found chain 1ze3C in template set Warning: unaligning (T0547)P472 (1ze3C)T102 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1ze3C 95 :KSKLTEN T0547 473 :T 1ze3C 103 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=74839 # 1dmuA.465.197 read from T0547.t04.many.frag # found chain 1dmuA in template set T0547 465 :LDRLDEEPT 1dmuA 198 :LYILSDGTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=74840 # 1pii.465.390 read from T0547.t04.many.frag # found chain 1pii in template set Warning: unaligning (T0547)E470 (1pii)G396 because T (delta_L) conformation "forbidden" or filtered. T0547 465 :LDRLD 1pii 391 :WSLLN T0547 471 :EPT 1pii 397 :QSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=74842 # 1xv5A.465.258 read from T0547.t04.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)T473 (1xv5A)N1266 because L (left) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 1xv5A 1258 :IDKMNLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=74843 # 1ryoA.466.235 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1ryoA)A244 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRLDEE 1ryoA 236 :DEYKDC T0547 473 :T 1ryoA 243 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=74845 # 1quqB.466.14 read from T0547.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)R467 (1quqB)M16 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0547 466 :D 1quqB 15 :G T0547 468 :LDEEP 1quqB 17 :LAQFI T0547 474 :R 1quqB 23 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=74848 # 1t82A.466.118 read from T0547.t04.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRLDEE 1t82A 109 :SPLQRG T0547 473 :TR 1t82A 116 :KA Number of specific fragments extracted= 2 number of extra gaps= 1 total=74850 # 2exrA.466.302 read from T0547.t04.many.frag # found chain 2exrA in training set T0547 466 :DRLDEEPTR 2exrA 303 :TRLPQSCGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=74851 # 1xi1A.466.234 read from T0547.t04.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)E471 (1xi1A)K240 because P (beta_P) conformation "forbidden" or filtered. T0547 466 :DRLDE 1xi1A 235 :DRFKE T0547 472 :PTR 1xi1A 241 :EIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=74853 # 1z70X.466.36 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)D469 (1z70X)G1112 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1z70X)P1115 because C (cis) conformation "forbidden" or filtered. T0547 466 :DRL 1z70X 1109 :KQD T0547 470 :EE 1z70X 1113 :EA T0547 473 :TR 1z70X 1116 :AR Number of specific fragments extracted= 3 number of extra gaps= 2 total=74856 # 2b5gA.466.43 read from T0547.t04.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)D469 (2b5gA)G47 because P (beta_P) conformation "forbidden" or filtered. T0547 466 :DRL 2b5gA 44 :DGF T0547 470 :EEPTR 2b5gA 48 :EHPFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=74858 # 1t6eX.466.197 read from T0547.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)E470 (1t6eX)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 466 :DRLD 1t6eX 198 :VTKG T0547 471 :EPTR 1t6eX 203 :SPAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=74860 # 4bcl.466.245 read from T0547.t04.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)E470 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (4bcl)A252 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRLD 4bcl 246 :EQLN T0547 471 :E 4bcl 251 :P T0547 473 :TR 4bcl 253 :SI Number of specific fragments extracted= 3 number of extra gaps= 2 total=74863 # 2bj0A.466.124 read from T0547.t04.many.frag # found chain 2bj0A in template set T0547 466 :DRLDEEPTR 2bj0A 125 :INVDTEPGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74864 # 1vqoA.466.30 read from T0547.t04.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)E470 (1vqoA)D34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1vqoA)G35 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vqoA)D36 because T (delta_L) conformation "forbidden" or filtered. T0547 466 :DRLD 1vqoA 30 :RKVE T0547 473 :TR 1vqoA 37 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=74866 # 1vp6A.466.45 read from T0547.t04.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRLDEE 1vp6A 263 :CRIGEP T0547 473 :TR 1vp6A 270 :DR Number of specific fragments extracted= 2 number of extra gaps= 1 total=74868 # 2f8lA.466.287 read from T0547.t04.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)E470 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2f8lA)Q282 Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)Q282 Warning: unaligning (T0547)T473 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)A283 T0547 466 :DRLD 2f8lA 276 :TLFK T0547 474 :R 2f8lA 284 :R Number of specific fragments extracted= 2 number of extra gaps= 0 total=74870 # 1bc5A.466.196 read from T0547.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D466 (1bc5A)N212 because P (beta_P) conformation "forbidden" or filtered. T0547 467 :RLDEEPTR 1bc5A 213 :LLEKQYNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=74871 # 1dzkA.466.26 read from T0547.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)D469 (1dzkA)G30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1dzkA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1dzkA)F35 because G (3-10) conformation "forbidden" or filtered. T0547 466 :DRL 1dzkA 27 :EKI T0547 470 :E 1dzkA 31 :E T0547 472 :PT 1dzkA 33 :AP Number of specific fragments extracted= 3 number of extra gaps= 3 total=74874 # 1n12A.466.18 read from T0547.t04.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)R474 (1n12A)H38 because L (left) conformation "forbidden" or filtered. T0547 466 :DRLDEEPT 1n12A 30 :QTLSQNGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=74875 # 2a5zA.466.109 read from T0547.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)T473 (2a5zA)E117 because L (left) conformation "forbidden" or filtered. T0547 466 :DRLDEEP 2a5zA 110 :AIFPKES T0547 474 :R 2a5zA 118 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=74877 # 1qyrA.466.162 read from T0547.t04.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)E470 (1qyrA)P183 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1qyrA)P184 because P (beta_P) conformation "forbidden" or filtered. T0547 466 :DRLD 1qyrA 179 :SAFT T0547 472 :PTR 1qyrA 185 :PKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=74879 # 1nxmA.466.52 read from T0547.t04.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)P472 (1nxmA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRLDEE 1nxmA 53 :SFFAEG T0547 473 :TR 1nxmA 60 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=74881 # 1xv5A.466.259 read from T0547.t04.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)E471 (1xv5A)A1264 because P (beta_P) conformation "forbidden" or filtered. T0547 466 :DRLDE 1xv5A 1259 :DKMNL T0547 472 :PTR 1xv5A 1265 :PNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=74883 # 1gp0A.466.22 read from T0547.t04.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)E470 (1gp0A)G1534 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1gp0A)G1537 because S (epsilon) conformation "forbidden" or filtered. T0547 466 :DRLD 1gp0A 1530 :SSLS T0547 471 :EP 1gp0A 1535 :RA T0547 474 :R 1gp0A 1538 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=74886 # 1jsdA.466.130 read from T0547.t04.many.frag # found chain 1jsdA in training set Warning: unaligning (T0547)D469 (1jsdA)S134 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1jsdA)D135 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1jsdA)F137 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1jsdA)R139 because G (3-10) conformation "forbidden" or filtered. T0547 466 :DRL 1jsdA 131 :SAC T0547 471 :E 1jsdA 136 :S T0547 473 :T 1jsdA 138 :Y Number of specific fragments extracted= 3 number of extra gaps= 3 total=74889 # 1r17A.466.119 read from T0547.t04.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)P472 (1r17A)E381 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1r17A)N382 because L (left) conformation "forbidden" or filtered. T0547 466 :DRLDEE 1r17A 375 :DYVDKY T0547 474 :R 1r17A 383 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=74891 1jhsA expands to /projects/compbio/data/pdb/1jhs.pdb.gz 1jhsA:# 1jhsA.466.24 read from T0547.t04.many.frag # adding 1jhsA to template set # found chain 1jhsA in template set T0547 466 :DRLDEEPTR 1jhsA 55 :STLREVPDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=74892 # 1dmuA.466.198 read from T0547.t04.many.frag # found chain 1dmuA in template set Warning: unaligning (T0547)E471 (1dmuA)G204 because T (delta_L) conformation "forbidden" or filtered. T0547 466 :DRLDE 1dmuA 199 :YILSD T0547 472 :PTR 1dmuA 205 :TIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=74894 # 1ze3C.466.95 read from T0547.t04.many.frag # found chain 1ze3C in template set Warning: unaligning (T0547)P472 (1ze3C)T102 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRLDEE 1ze3C 96 :SKLTEN T0547 473 :TR 1ze3C 103 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=74896 # 1m22A.466.263 read from T0547.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)D469 (1m22A)D304 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRL 1m22A 301 :ARL T0547 470 :EEPTR 1m22A 305 :PQGLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=74898 # 1wa5C.466.898 read from T0547.t04.many.frag # found chain 1wa5C in template set T0547 466 :DRLDEEPTR 1wa5C 899 :VSISEKPFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=74899 # 1f86A.466.70 read from T0547.t04.many.frag # found chain 1f86A in training set Warning: unaligning (T0547)D469 (1f86A)G83 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1f86A)H88 because P (beta_P) conformation "forbidden" or filtered. T0547 466 :DRL 1f86A 80 :KAL T0547 470 :EEPT 1f86A 84 :ISPF Number of specific fragments extracted= 2 number of extra gaps= 2 total=74901 # 2bbkL.466.103 read from T0547.t04.many.frag # found chain 2bbkL in template set Warning: unaligning (T0547)R467 (2bbkL)G111 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (2bbkL)E113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (2bbkL)D114 because L (left) conformation "forbidden" or filtered. T0547 466 :D 2bbkL 110 :F T0547 468 :L 2bbkL 112 :A T0547 471 :EPTR 2bbkL 115 :DAMT Number of specific fragments extracted= 3 number of extra gaps= 2 total=74904 # 1ryoA.467.236 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RLDEE 1ryoA 237 :EYKDC T0547 473 :TRS 1ryoA 243 :LAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=74906 # 2b5gA.467.44 read from T0547.t04.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R467 (2b5gA)G45 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDEEPT 2b5gA 46 :FGEHPF T0547 475 :S 2b5gA 53 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=74908 # 2exrA.467.303 read from T0547.t04.many.frag # found chain 2exrA in training set T0547 467 :RLDEEPTRS 2exrA 304 :RLPQSCGSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=74909 # 1quqB.467.15 read from T0547.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)T473 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0547 467 :RLDEEP 1quqB 16 :MLAQFI T0547 474 :RS 1quqB 23 :KP Number of specific fragments extracted= 2 number of extra gaps= 1 total=74911 # 1z70X.467.37 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)D469 (1z70X)G1112 because L (left) conformation "forbidden" or filtered. T0547 467 :RL 1z70X 1110 :QD T0547 470 :EEPTRS 1z70X 1113 :EAPARR Number of specific fragments extracted= 2 number of extra gaps= 1 total=74913 # 1xi1A.467.235 read from T0547.t04.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)S475 (1xi1A)E244 because L (left) conformation "forbidden" or filtered. T0547 467 :RLDEEPTR 1xi1A 236 :RFKEKEIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=74914 # 1t6eX.467.198 read from T0547.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)E471 (1t6eX)S203 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RLDE 1t6eX 199 :TKGG T0547 472 :PTRS 1t6eX 204 :PAHY Number of specific fragments extracted= 2 number of extra gaps= 1 total=74916 # 2bj0A.467.125 read from T0547.t04.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)T473 (2bj0A)G132 because S (epsilon) conformation "forbidden" or filtered. T0547 467 :RLDEEP 2bj0A 126 :NVDTEP T0547 474 :RS 2bj0A 133 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=74918 # 1t82A.467.119 read from T0547.t04.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)E471 (1t82A)G114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RLDE 1t82A 110 :PLQR T0547 473 :TRS 1t82A 116 :KAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=74920 # 1vqoA.467.31 read from T0547.t04.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)E470 (1vqoA)D34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1vqoA)G35 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vqoA)D36 because T (delta_L) conformation "forbidden" or filtered. T0547 467 :RLD 1vqoA 31 :KVE T0547 473 :TRS 1vqoA 37 :VIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=74922 # 1vp6A.467.46 read from T0547.t04.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)D469 (1vp6A)G266 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RL 1vp6A 264 :RI T0547 470 :EE 1vp6A 267 :EP T0547 473 :TRS 1vp6A 270 :DRM Number of specific fragments extracted= 3 number of extra gaps= 2 total=74925 # 2f8lA.467.288 read from T0547.t04.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)E470 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2f8lA)Q282 Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)Q282 Warning: unaligning (T0547)T473 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)A283 T0547 467 :RLD 2f8lA 277 :LFK T0547 474 :RS 2f8lA 284 :RK Number of specific fragments extracted= 2 number of extra gaps= 0 total=74927 # 2a5zA.467.110 read from T0547.t04.many.frag # found chain 2a5zA in template set T0547 467 :RLDEEPTRS 2a5zA 111 :IFPKESELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=74928 # 1xv5A.467.260 read from T0547.t04.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)E471 (1xv5A)A1264 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1xv5A)N1266 because L (left) conformation "forbidden" or filtered. T0547 467 :RLDE 1xv5A 1260 :KMNL T0547 472 :P 1xv5A 1265 :P T0547 474 :RS 1xv5A 1267 :QP Number of specific fragments extracted= 3 number of extra gaps= 2 total=74931 # 4bcl.467.246 read from T0547.t04.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)E470 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (4bcl)A252 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (4bcl)S253 because Y (epsilon') conformation "forbidden" or filtered. T0547 467 :RLD 4bcl 247 :QLN T0547 471 :E 4bcl 251 :P T0547 474 :RS 4bcl 254 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=74934 # 1n12A.467.19 read from T0547.t04.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)P472 (1n12A)G36 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1n12A)H38 because L (left) conformation "forbidden" or filtered. T0547 467 :RLDEE 1n12A 31 :TLSQN T0547 473 :T 1n12A 37 :N T0547 475 :S 1n12A 39 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=74937 # 1nxmA.467.53 read from T0547.t04.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)P472 (1nxmA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RLDEE 1nxmA 54 :FFAEG T0547 473 :TRS 1nxmA 60 :LQN Number of specific fragments extracted= 2 number of extra gaps= 1 total=74939 # 1dzkA.467.27 read from T0547.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)E471 (1dzkA)N32 because L (left) conformation "forbidden" or filtered. T0547 467 :RLDE 1dzkA 28 :KIGE T0547 472 :PTRS 1dzkA 33 :APFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=74941 # 1dmuA.467.199 read from T0547.t04.many.frag # found chain 1dmuA in template set T0547 467 :RLDEEPTRS 1dmuA 200 :ILSDGTIAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74942 # 1qyrA.467.163 read from T0547.t04.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)E470 (1qyrA)P183 because C (cis) conformation "forbidden" or filtered. T0547 467 :RLD 1qyrA 180 :AFT T0547 471 :EPTRS 1qyrA 184 :PPKVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=74944 # 1pgl2.467.181 read from T0547.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0547)S475 (1pgl2)P190 because C (cis) conformation "forbidden" or filtered. T0547 467 :RLDEEPTR 1pgl2 182 :YCVLNPQN Number of specific fragments extracted= 1 number of extra gaps= 1 total=74945 # 1bc5A.467.197 read from T0547.t04.many.frag # found chain 1bc5A in template set T0547 467 :RLDEEPTRS 1bc5A 213 :LLEKQYNVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=74946 # 1zxuA.467.31 read from T0547.t04.many.frag # found chain 1zxuA in training set T0547 467 :RLDEEPTRS 1zxuA 32 :YCAPYPIDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=74947 # 1gp0A.467.23 read from T0547.t04.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)T473 (1gp0A)G1537 because S (epsilon) conformation "forbidden" or filtered. T0547 467 :RLDEEP 1gp0A 1531 :SLSGRA T0547 474 :RS 1gp0A 1538 :FT Number of specific fragments extracted= 2 number of extra gaps= 1 total=74949 # 1jsdA.467.131 read from T0547.t04.many.frag # found chain 1jsdA in training set Warning: unaligning (T0547)D469 (1jsdA)S134 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1jsdA)D135 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1jsdA)F137 because Y (epsilon') conformation "forbidden" or filtered. T0547 467 :RL 1jsdA 132 :AC T0547 471 :E 1jsdA 136 :S T0547 473 :TRS 1jsdA 138 :YRS Number of specific fragments extracted= 3 number of extra gaps= 2 total=74952 1fjgL expands to /projects/compbio/data/pdb/1fjg.pdb.gz 1fjgL:# 1fjgL.467.25 read from T0547.t04.many.frag # adding 1fjgL to template set # found chain 1fjgL in template set Warning: unaligning (T0547)D469 (1fjgL)K28 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1fjgL)G29 because L (left) conformation "forbidden" or filtered. T0547 467 :RL 1fjgL 26 :AL T0547 471 :EPTRS 1fjgL 30 :APFRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=74954 # 1jhsA.467.25 read from T0547.t04.many.frag # found chain 1jhsA in template set Warning: unaligning (T0547)E471 (1jhsA)V60 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RLDE 1jhsA 56 :TLRE T0547 472 :PTRS 1jhsA 61 :PDTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=74956 # 1a12A.467.222 read from T0547.t04.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)E470 (1a12A)R234 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 because of BadResidue code BAD_PEPTIDE in next template residue (1a12A)S236 Warning: unaligning (T0547)P472 because of BadResidue code BAD_PEPTIDE at template residue (1a12A)S236 Warning: unaligning (T0547)T473 because of BadResidue code BAD_PEPTIDE at template residue (1a12A)R237 T0547 467 :RLD 1a12A 231 :LKS T0547 474 :RS 1a12A 238 :GH Number of specific fragments extracted= 2 number of extra gaps= 1 total=74958 # 2bbkL.467.104 read from T0547.t04.many.frag # found chain 2bbkL in template set Warning: unaligning (T0547)R467 (2bbkL)G111 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (2bbkL)D114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (2bbkL)D115 because L (left) conformation "forbidden" or filtered. T0547 468 :LD 2bbkL 112 :AE T0547 472 :PTRS 2bbkL 116 :AMTY Number of specific fragments extracted= 2 number of extra gaps= 2 total=74960 # 1f86A.467.71 read from T0547.t04.many.frag # found chain 1f86A in training set T0547 467 :RLDEEPTRS 1f86A 81 :ALGISPFHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=74961 # 2b5gA.468.45 read from T0547.t04.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)D469 (2b5gA)G47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (2b5gA)H49 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (2b5gA)C54 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :L 2b5gA 46 :F T0547 470 :E 2b5gA 48 :E T0547 472 :PT 2b5gA 50 :PF T0547 475 :S 2b5gA 53 :H Number of specific fragments extracted= 4 number of extra gaps= 4 total=74965 # 2exrA.468.304 read from T0547.t04.many.frag # found chain 2exrA in training set T0547 468 :LDEEPTRSA 2exrA 305 :LPQSCGSVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=74966 # 1ryoA.468.237 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :LDEE 1ryoA 238 :YKDC T0547 473 :TRSA 1ryoA 243 :LAQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=74968 # 1vqoA.468.32 read from T0547.t04.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)E471 (1vqoA)G35 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vqoA)D36 because T (delta_L) conformation "forbidden" or filtered. T0547 468 :LDE 1vqoA 32 :VED T0547 473 :TRSA 1vqoA 37 :VIAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=74970 # 1t6eX.468.199 read from T0547.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)A476 (1t6eX)I208 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDEEPTRS 1t6eX 200 :KGGSPAHY Number of specific fragments extracted= 1 number of extra gaps= 1 total=74971 # 1z70X.468.38 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)P472 (1z70X)P1115 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1z70X)R1118 because P (beta_P) conformation "forbidden" or filtered. T0547 468 :LDEE 1z70X 1111 :DGEA T0547 473 :TR 1z70X 1116 :AR T0547 476 :A 1z70X 1119 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=74974 # 1vp6A.468.47 read from T0547.t04.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)D469 (1vp6A)G266 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1vp6A)E267 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :L 1vp6A 265 :I T0547 471 :E 1vp6A 268 :P T0547 473 :TRSA 1vp6A 270 :DRMF Number of specific fragments extracted= 3 number of extra gaps= 2 total=74977 # 1quqB.468.16 read from T0547.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)T473 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDEEP 1quqB 17 :LAQFI T0547 474 :RS 1quqB 23 :KP Number of specific fragments extracted= 2 number of extra gaps= 2 total=74979 # 2f8lA.468.289 read from T0547.t04.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)D469 (2f8lA)K279 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2f8lA)Q282 Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)Q282 Warning: unaligning (T0547)T473 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)A283 Warning: unaligning (T0547)R474 (2f8lA)R284 because P (beta_P) conformation "forbidden" or filtered. T0547 468 :L 2f8lA 278 :F T0547 475 :SA 2f8lA 285 :KS Number of specific fragments extracted= 2 number of extra gaps= 1 total=74981 # 2bj0A.468.126 read from T0547.t04.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)E470 (2bj0A)T129 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :LD 2bj0A 127 :VD T0547 471 :EPTRSA 2bj0A 130 :EPGATC Number of specific fragments extracted= 2 number of extra gaps= 1 total=74983 # 1xi1A.468.236 read from T0547.t04.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)D469 (1xi1A)K238 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1xi1A)K240 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1xi1A)E244 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1xi1A)G245 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :L 1xi1A 237 :F T0547 470 :E 1xi1A 239 :E T0547 472 :PTR 1xi1A 241 :EIG Number of specific fragments extracted= 3 number of extra gaps= 3 total=74986 # 2a5zA.468.111 read from T0547.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)D469 (2a5zA)P113 because P (beta_P) conformation "forbidden" or filtered. T0547 468 :L 2a5zA 112 :F T0547 470 :EEPTRSA 2a5zA 114 :KESELEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=74988 # 1xv5A.468.261 read from T0547.t04.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)E471 (1xv5A)A1264 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1xv5A)N1266 because L (left) conformation "forbidden" or filtered. T0547 468 :LDE 1xv5A 1261 :MNL T0547 472 :P 1xv5A 1265 :P T0547 474 :RSA 1xv5A 1267 :QPA Number of specific fragments extracted= 3 number of extra gaps= 2 total=74991 # 1fjgL.468.26 read from T0547.t04.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)E470 (1fjgL)G29 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1fjgL)G35 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LD 1fjgL 27 :LK T0547 471 :EPTRS 1fjgL 30 :APFRR Number of specific fragments extracted= 2 number of extra gaps= 2 total=74993 # 1jc9A.468.146 read from T0547.t04.many.frag # found chain 1jc9A in template set T0547 468 :LDEEPTRSA 1jc9A 147 :DKENDTRYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=74994 # 1t82A.468.120 read from T0547.t04.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)E471 (1t82A)G114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :LDE 1t82A 111 :LQR T0547 473 :TRSA 1t82A 116 :KAKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=74996 # 1nxmA.468.54 read from T0547.t04.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)E471 (1nxmA)G58 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1nxmA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :LDE 1nxmA 55 :FAE T0547 473 :TRSA 1nxmA 60 :LQNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=74998 # 1zxuA.468.32 read from T0547.t04.many.frag # found chain 1zxuA in training set Warning: unaligning (T0547)D469 (1zxuA)A34 because P (beta_P) conformation "forbidden" or filtered. T0547 468 :L 1zxuA 33 :C T0547 470 :EEPTRSA 1zxuA 35 :PYPIDMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=75000 # 1jhsA.468.26 read from T0547.t04.many.frag # found chain 1jhsA in template set Warning: unaligning (T0547)R474 (1jhsA)T63 because G (3-10) conformation "forbidden" or filtered. T0547 468 :LDEEPT 1jhsA 57 :LREVPD T0547 475 :SA 1jhsA 64 :QA Number of specific fragments extracted= 2 number of extra gaps= 1 total=75002 # 1hf2A.468.151 read from T0547.t04.many.frag # found chain 1hf2A in template set T0547 468 :LDEEPTRSA 1hf2A 152 :LNEGGQAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=75003 # 1dmuA.468.200 read from T0547.t04.many.frag # found chain 1dmuA in template set Warning: unaligning (T0547)E471 (1dmuA)G204 because T (delta_L) conformation "forbidden" or filtered. T0547 468 :LDE 1dmuA 201 :LSD T0547 472 :PTRSA 1dmuA 205 :TIAPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75005 # 2a13A.468.68 read from T0547.t04.many.frag # found chain 2a13A in training set T0547 468 :LDEEPTRSA 2a13A 69 :LESGAPMHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=75006 # 1tovA.468.24 read from T0547.t04.many.frag # found chain 1tovA in training set Warning: unaligning (T0547)S475 (1tovA)R163 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1tovA)G164 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDEEPTR 1tovA 156 :VGAQMAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=75007 # 1pgl2.468.182 read from T0547.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0547)S475 (1pgl2)P190 because C (cis) conformation "forbidden" or filtered. T0547 468 :LDEEPTR 1pgl2 183 :CVLNPQN T0547 476 :A 1pgl2 191 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=75009 # 1dzkA.468.28 read from T0547.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)E470 (1dzkA)E31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1dzkA)N32 because L (left) conformation "forbidden" or filtered. T0547 468 :LD 1dzkA 29 :IG T0547 472 :PTRSA 1dzkA 33 :APFQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75011 # 1n12A.468.20 read from T0547.t04.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)T473 (1n12A)N37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1n12A)H38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1n12A)E39 because P (beta_P) conformation "forbidden" or filtered. T0547 468 :LDEEP 1n12A 32 :LSQNG T0547 476 :A 1n12A 40 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=75013 # 1hq0A.468.245 read from T0547.t04.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)L468 (1hq0A)D965 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1hq0A)N966 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1hq0A)P968 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1hq0A)G971 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1hq0A)F972 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :E 1hq0A 967 :I T0547 472 :PT 1hq0A 969 :EH T0547 476 :A 1hq0A 973 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=75016 # 1a12A.468.223 read from T0547.t04.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)E471 because of BadResidue code BAD_PEPTIDE in next template residue (1a12A)S236 Warning: unaligning (T0547)P472 because of BadResidue code BAD_PEPTIDE at template residue (1a12A)S236 Warning: unaligning (T0547)T473 because of BadResidue code BAD_PEPTIDE at template residue (1a12A)R237 T0547 468 :LDE 1a12A 232 :KSR T0547 474 :RSA 1a12A 238 :GHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75018 # 8abp.468.272 read from T0547.t04.many.frag # found chain 8abp in training set Warning: unaligning (T0547)E470 because of BadResidue code BAD_PEPTIDE in next template residue (8abp)E276 Warning: unaligning (T0547)E471 because of BadResidue code BAD_PEPTIDE at template residue (8abp)E276 T0547 468 :LD 8abp 273 :KD T0547 472 :PTRSA 8abp 277 :PPKFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=75020 # 1qyrA.468.164 read from T0547.t04.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)E470 (1qyrA)P183 because C (cis) conformation "forbidden" or filtered. T0547 468 :LD 1qyrA 181 :FT T0547 471 :EPTRSA 1qyrA 184 :PPKVDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=75022 # 2b5gA.469.46 read from T0547.t04.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)D469 (2b5gA)G47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (2b5gA)H49 because D (zeta) conformation "forbidden" or filtered. T0547 470 :E 2b5gA 48 :E T0547 472 :PTRSAS 2b5gA 50 :PFYHCL Number of specific fragments extracted= 2 number of extra gaps= 2 total=75024 # 2exrA.469.305 read from T0547.t04.many.frag # found chain 2exrA in training set T0547 469 :DEEPTRSAS 2exrA 306 :PQSCGSVLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=75025 # 2f8lA.469.290 read from T0547.t04.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)E470 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2f8lA)Q282 Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)Q282 Warning: unaligning (T0547)T473 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)A283 Warning: unaligning (T0547)S475 (2f8lA)K285 because P (beta_P) conformation "forbidden" or filtered. T0547 469 :D 2f8lA 279 :K T0547 474 :R 2f8lA 284 :R T0547 476 :AS 2f8lA 286 :SI Number of specific fragments extracted= 3 number of extra gaps= 1 total=75028 # 1vqoA.469.33 read from T0547.t04.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)P472 (1vqoA)D36 because T (delta_L) conformation "forbidden" or filtered. T0547 469 :DEE 1vqoA 33 :EDG T0547 473 :TRSAS 1vqoA 37 :VIAGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=75030 # 1vp6A.469.48 read from T0547.t04.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)D469 (1vp6A)G266 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1vp6A)E267 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 471 :E 1vp6A 268 :P T0547 473 :TRSAS 1vp6A 270 :DRMFF Number of specific fragments extracted= 2 number of extra gaps= 2 total=75032 # 2a5zA.469.112 read from T0547.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)T473 (2a5zA)E117 because L (left) conformation "forbidden" or filtered. T0547 469 :DEEP 2a5zA 113 :PKES T0547 474 :RSAS 2a5zA 118 :LEVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=75034 # 1tovA.469.25 read from T0547.t04.many.frag # found chain 1tovA in training set Warning: unaligning (T0547)D469 (1tovA)G157 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1tovA)G164 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EEPTRS 1tovA 158 :AQMARR T0547 477 :S 1tovA 165 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=75036 # 1quqB.469.17 read from T0547.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)A476 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0547 469 :DEEPTRS 1quqB 18 :AQFIDKP T0547 477 :S 1quqB 26 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=75038 # 1ryoA.469.238 read from T0547.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. T0547 469 :DEE 1ryoA 239 :KDC T0547 473 :TRSAS 1ryoA 243 :LAQVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=75040 # 1xi1A.469.237 read from T0547.t04.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)E470 (1xi1A)E239 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1xi1A)I242 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1xi1A)E244 because L (left) conformation "forbidden" or filtered. T0547 469 :D 1xi1A 238 :K T0547 471 :EP 1xi1A 240 :KE T0547 474 :R 1xi1A 243 :G T0547 476 :AS 1xi1A 245 :GM Number of specific fragments extracted= 4 number of extra gaps= 3 total=75044 # 1hf2A.469.152 read from T0547.t04.many.frag # found chain 1hf2A in template set T0547 469 :DEEPTRSAS 1hf2A 153 :NEGGQAVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=75045 # 1z70X.469.39 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)D469 (1z70X)G1112 because L (left) conformation "forbidden" or filtered. T0547 470 :EEPTRSAS 1z70X 1113 :EAPARRVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=75046 # 1ewnA.469.32 read from T0547.t04.many.frag # found chain 1ewnA in template set T0547 469 :DEEPTRSAS 1ewnA 112 :PNGTELRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=75047 # 1fjgL.469.27 read from T0547.t04.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)D469 (1fjgL)K28 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1fjgL)G29 because L (left) conformation "forbidden" or filtered. T0547 471 :EPTRSAS 1fjgL 30 :APFRRGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=75048 # 1t6eX.469.200 read from T0547.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)E470 (1t6eX)G202 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1t6eX)I208 because Y (epsilon') conformation "forbidden" or filtered. T0547 469 :D 1t6eX 201 :G T0547 471 :EPTRS 1t6eX 203 :SPAHY T0547 477 :S 1t6eX 209 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=75051 # 1hq0A.469.246 read from T0547.t04.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)D469 (1hq0A)N966 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1hq0A)P968 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1hq0A)G971 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :E 1hq0A 967 :I T0547 472 :PT 1hq0A 969 :EH T0547 475 :SAS 1hq0A 972 :FGT Number of specific fragments extracted= 3 number of extra gaps= 3 total=75054 # 1xv5A.469.262 read from T0547.t04.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)D469 (1xv5A)N1262 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1xv5A)N1266 because L (left) conformation "forbidden" or filtered. T0547 470 :EEP 1xv5A 1263 :LAP T0547 474 :RSAS 1xv5A 1267 :QPAQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=75056 # 2bj0A.469.127 read from T0547.t04.many.frag # found chain 2bj0A in template set T0547 469 :DEEPTRSAS 2bj0A 128 :DTEPGATCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=75057 # 1jc9A.469.147 read from T0547.t04.many.frag # found chain 1jc9A in template set T0547 469 :DEEPTRSAS 1jc9A 148 :KENDTRYAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=75058 # 1jhsA.469.27 read from T0547.t04.many.frag # found chain 1jhsA in template set Warning: unaligning (T0547)E471 (1jhsA)V60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1jhsA)T63 because G (3-10) conformation "forbidden" or filtered. T0547 469 :DE 1jhsA 58 :RE T0547 472 :PT 1jhsA 61 :PD T0547 475 :SAS 1jhsA 64 :QAV Number of specific fragments extracted= 3 number of extra gaps= 2 total=75061 # 2a13A.469.69 read from T0547.t04.many.frag # found chain 2a13A in training set Warning: unaligning (T0547)S477 (2a13A)E78 because Y (epsilon') conformation "forbidden" or filtered. T0547 469 :DEEPTRSA 2a13A 70 :ESGAPMHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=75062 # 1zxuA.469.33 read from T0547.t04.many.frag # found chain 1zxuA in training set Warning: unaligning (T0547)E471 (1zxuA)Y36 because E (beta_S) conformation "forbidden" or filtered. T0547 469 :DE 1zxuA 34 :AP T0547 472 :PTRSAS 1zxuA 37 :PIDMAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=75064 # 1vh4A.469.146 read from T0547.t04.many.frag # found chain 1vh4A in training set Warning: unaligning (T0547)D469 (1vh4A)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1vh4A)R147 because D (zeta) conformation "forbidden" or filtered. T0547 470 :E 1vh4A 146 :Q T0547 472 :PTRSAS 1vh4A 148 :PAKPLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=75066 # 1pgl2.469.183 read from T0547.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0547)S475 (1pgl2)P190 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1pgl2)F191 because P (beta_P) conformation "forbidden" or filtered. T0547 469 :DEEPTR 1pgl2 184 :VLNPQN T0547 477 :S 1pgl2 192 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=75068 # 1nxmA.469.55 read from T0547.t04.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)E471 (1nxmA)G58 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1nxmA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 469 :DE 1nxmA 56 :AE T0547 473 :TRSAS 1nxmA 60 :LQNNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75070 # 2bsdA.469.113 read from T0547.t04.many.frag # found chain 2bsdA in template set Warning: unaligning (T0547)P472 (2bsdA)G117 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (2bsdA)V121 because E (beta_S) conformation "forbidden" or filtered. T0547 469 :DEE 2bsdA 114 :NGS T0547 473 :TRS 2bsdA 118 :VLK T0547 477 :S 2bsdA 122 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=75073 # 1twfC.469.105 read from T0547.t04.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)E470 (1twfC)S107 because P (beta_P) conformation "forbidden" or filtered. T0547 469 :D 1twfC 106 :E T0547 471 :EPTRSAS 1twfC 108 :ESTTNVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=75075 # 2biqA.469.130 read from T0547.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)D469 (2biqA)E224 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (2biqA)V225 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (2biqA)S227 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (2biqA)C229 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :E 2biqA 226 :G T0547 473 :T 2biqA 228 :D T0547 475 :SAS 2biqA 230 :TTI Number of specific fragments extracted= 3 number of extra gaps= 3 total=75078 # 1dmuA.469.201 read from T0547.t04.many.frag # found chain 1dmuA in template set Warning: unaligning (T0547)E471 (1dmuA)G204 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1dmuA)P208 because P (beta_P) conformation "forbidden" or filtered. T0547 469 :DE 1dmuA 202 :SD T0547 472 :PTR 1dmuA 205 :TIA T0547 476 :AS 1dmuA 209 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=75081 # 1t82A.469.121 read from T0547.t04.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)E471 (1t82A)G114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 469 :DE 1t82A 112 :QR T0547 473 :TRSAS 1t82A 116 :KAKVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=75083 # 2b5gA.470.47 read from T0547.t04.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EEPT 2b5gA 48 :EHPF T0547 475 :SASI 2b5gA 53 :HCLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75085 # 2f8lA.470.291 read from T0547.t04.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)E470 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2f8lA)Q282 Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)Q282 Warning: unaligning (T0547)T473 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)A283 Warning: unaligning (T0547)R474 (2f8lA)R284 because P (beta_P) conformation "forbidden" or filtered. T0547 475 :SASI 2f8lA 285 :KSIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75086 # 2exrA.470.306 read from T0547.t04.many.frag # found chain 2exrA in training set T0547 470 :EEPTRSASI 2exrA 307 :QSCGSVLYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=75087 # 2a5zA.470.113 read from T0547.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)T473 (2a5zA)E117 because L (left) conformation "forbidden" or filtered. T0547 470 :EEP 2a5zA 114 :KES T0547 474 :RSASI 2a5zA 118 :LEVTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75089 # 1vqoA.470.34 read from T0547.t04.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)E470 (1vqoA)D34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1vqoA)G35 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vqoA)D36 because T (delta_L) conformation "forbidden" or filtered. T0547 473 :TRSASI 1vqoA 37 :VIAGTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=75090 # 1tovA.470.26 read from T0547.t04.many.frag # found chain 1tovA in training set Warning: unaligning (T0547)A476 (1tovA)G164 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EEPTRS 1tovA 158 :AQMARR T0547 477 :SI 1tovA 165 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75092 # 1hf2A.470.153 read from T0547.t04.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)R474 (1hf2A)A158 because P (beta_P) conformation "forbidden" or filtered. T0547 470 :EEPT 1hf2A 154 :EGGQ T0547 475 :SASI 1hf2A 159 :VVAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=75094 # 1hq0A.470.247 read from T0547.t04.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)E471 (1hq0A)P968 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1hq0A)F972 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :E 1hq0A 967 :I T0547 472 :PTR 1hq0A 969 :EHG T0547 476 :ASI 1hq0A 973 :GTS Number of specific fragments extracted= 3 number of extra gaps= 2 total=75097 # 1xszA.470.268 read from T0547.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)P472 (1xszA)T269 because G (3-10) conformation "forbidden" or filtered. T0547 470 :EE 1xszA 267 :NK T0547 473 :TRSASI 1xszA 270 :SAQATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=75099 # 1xv5A.470.263 read from T0547.t04.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)S475 (1xv5A)P1268 because P (beta_P) conformation "forbidden" or filtered. T0547 470 :EEPTR 1xv5A 1263 :LAPNQ T0547 476 :ASI 1xv5A 1269 :AQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=75101 # 1ewnA.470.33 read from T0547.t04.many.frag # found chain 1ewnA in template set T0547 470 :EEPTRSASI 1ewnA 113 :NGTELRGRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=75102 # 1bob.470.208 read from T0547.t04.many.frag # found chain 1bob in template set Warning: unaligning (T0547)E470 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1bob)I209 Warning: unaligning (T0547)P472 (1bob)K211 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1bob)F213 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :E 1bob 210 :D T0547 473 :T 1bob 212 :K T0547 475 :SASI 1bob 214 :RAKI Number of specific fragments extracted= 3 number of extra gaps= 2 total=75105 # 1vp6A.470.49 read from T0547.t04.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 470 :EE 1vp6A 267 :EP T0547 473 :TRSASI 1vp6A 270 :DRMFFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75107 # 1quqB.470.18 read from T0547.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)A476 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EEPTRS 1quqB 19 :QFIDKP T0547 477 :SI 1quqB 26 :CF Number of specific fragments extracted= 2 number of extra gaps= 1 total=75109 # 1dmhA.470.144 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E470 (1dmhA)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1dmhA)P149 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1dmhA)N150 because T (delta_L) conformation "forbidden" or filtered. T0547 471 :EPT 1dmhA 146 :KPL T0547 476 :ASI 1dmhA 151 :AKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=75111 # 2biqA.470.131 read from T0547.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)P472 (2biqA)S227 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (2biqA)C229 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EE 2biqA 225 :VG T0547 473 :T 2biqA 228 :D T0547 475 :SASI 2biqA 230 :TTIH Number of specific fragments extracted= 3 number of extra gaps= 2 total=75114 # 1fjgL.470.28 read from T0547.t04.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)E470 (1fjgL)G29 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1fjgL)A30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1fjgL)R34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1fjgL)G35 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PTR 1fjgL 31 :PFR T0547 477 :SI 1fjgL 36 :VC Number of specific fragments extracted= 2 number of extra gaps= 2 total=75116 # 1vh4A.470.147 read from T0547.t04.many.frag # found chain 1vh4A in training set T0547 470 :EEPTRSASI 1vh4A 146 :QRPAKPLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75117 # 1xi1A.470.238 read from T0547.t04.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)E470 (1xi1A)E239 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1xi1A)E244 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1xi1A)G245 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EPTR 1xi1A 240 :KEIG T0547 477 :SI 1xi1A 246 :MV Number of specific fragments extracted= 2 number of extra gaps= 2 total=75119 # 1jc9A.470.148 read from T0547.t04.many.frag # found chain 1jc9A in template set Warning: unaligning (T0547)E471 (1jc9A)N150 because T (delta_L) conformation "forbidden" or filtered. T0547 470 :E 1jc9A 149 :E T0547 472 :PTRSASI 1jc9A 151 :DTRYAIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=75121 # 2a7bA.470.23 read from T0547.t04.many.frag # found chain 2a7bA in training set T0547 470 :EEPTRSASI 2a7bA 726 :TNPSVTVIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=75122 # 1qyrA.470.166 read from T0547.t04.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)E470 (1qyrA)P183 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1qyrA)S189 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (1qyrA)A190 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EPTRS 1qyrA 184 :PPKVD T0547 478 :I 1qyrA 191 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=75124 # 1x8qA.470.62 read from T0547.t04.many.frag # found chain 1x8qA in training set Warning: unaligning (T0547)P472 (1x8qA)Q65 because T (delta_L) conformation "forbidden" or filtered. T0547 470 :EE 1x8qA 63 :KT T0547 473 :TRSASI 1x8qA 66 :DTFYDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75126 # 1jhsA.470.28 read from T0547.t04.many.frag # found chain 1jhsA in template set Warning: unaligning (T0547)R474 (1jhsA)T63 because G (3-10) conformation "forbidden" or filtered. T0547 470 :EEPT 1jhsA 59 :EVPD T0547 475 :SASI 1jhsA 64 :QAVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=75128 # 1twfC.470.106 read from T0547.t04.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)R474 (1twfC)T111 because P (beta_P) conformation "forbidden" or filtered. T0547 470 :EEPT 1twfC 107 :SEST T0547 475 :SASI 1twfC 112 :NVYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=75130 # 2bjfA.470.269 read from T0547.t04.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)P472 (2bjfA)K272 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (2bjfA)D274 because P (beta_P) conformation "forbidden" or filtered. T0547 470 :EE 2bjfA 270 :EE T0547 473 :T 2bjfA 273 :S T0547 475 :SASI 2bjfA 275 :LTQY Number of specific fragments extracted= 3 number of extra gaps= 2 total=75133 # 1z70X.470.40 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)E471 (1z70X)A1114 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (1z70X)T1120 because P (beta_P) conformation "forbidden" or filtered. T0547 470 :E 1z70X 1113 :E T0547 472 :PTRSA 1z70X 1115 :PARRV T0547 478 :I 1z70X 1121 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=75136 # 1d5yA.470.170 read from T0547.t04.many.frag # found chain 1d5yA in template set T0547 470 :EEPTRSASI 1d5yA 173 :TIPPVLYGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75137 # 2bsdA.470.114 read from T0547.t04.many.frag # found chain 2bsdA in template set Warning: unaligning (T0547)E470 (2bsdA)G115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (2bsdA)S116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (2bsdA)C122 because P (beta_P) conformation "forbidden" or filtered. T0547 472 :PTRSA 2bsdA 117 :GVLKV T0547 478 :I 2bsdA 123 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=75139 # 1vkkA.470.74 read from T0547.t04.many.frag # found chain 1vkkA in training set Warning: unaligning (T0547)P472 (1vkkA)Q65 because E (beta_S) conformation "forbidden" or filtered. T0547 470 :EE 1vkkA 63 :ER T0547 473 :TRSASI 1vkkA 66 :PRFVVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=75141 # 2b5gA.471.48 read from T0547.t04.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EPT 2b5gA 49 :HPF T0547 475 :SASIW 2b5gA 53 :HCLVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=75143 # 1dmhA.471.145 read from T0547.t04.many.frag # found chain 1dmhA in training set T0547 471 :EPTRSASIW 1dmhA 146 :KPLPNAKVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75144 # 2f8lA.471.292 read from T0547.t04.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)Q282 Warning: unaligning (T0547)T473 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)A283 Warning: unaligning (T0547)R474 (2f8lA)R284 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (2f8lA)I287 because P (beta_P) conformation "forbidden" or filtered. T0547 475 :SA 2f8lA 285 :KS T0547 478 :IW 2f8lA 288 :LI Number of specific fragments extracted= 2 number of extra gaps= 1 total=75146 # 2a5zA.471.114 read from T0547.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)T473 (2a5zA)E117 because L (left) conformation "forbidden" or filtered. T0547 471 :EP 2a5zA 115 :ES T0547 474 :RSASIW 2a5zA 118 :LEVTVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=75148 # 1vqoA.471.35 read from T0547.t04.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)P472 (1vqoA)D36 because T (delta_L) conformation "forbidden" or filtered. T0547 471 :E 1vqoA 35 :G T0547 473 :TRSASIW 1vqoA 37 :VIAGTVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75150 # 1xszA.471.269 read from T0547.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)P472 (1xszA)T269 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1xszA)Q276 because P (beta_P) conformation "forbidden" or filtered. T0547 471 :E 1xszA 268 :K T0547 473 :TRSASI 1xszA 270 :SAQATI Number of specific fragments extracted= 2 number of extra gaps= 2 total=75152 # 1xv5A.471.264 read from T0547.t04.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)T473 (1xv5A)N1266 because L (left) conformation "forbidden" or filtered. T0547 471 :EP 1xv5A 1264 :AP T0547 474 :RSASIW 1xv5A 1267 :QPAQIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=75154 # 1hf2A.471.154 read from T0547.t04.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)R474 (1hf2A)A158 because P (beta_P) conformation "forbidden" or filtered. T0547 471 :EPT 1hf2A 155 :GGQ T0547 475 :SASIW 1hf2A 159 :VVAAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=75156 # 2exrA.471.307 read from T0547.t04.many.frag # found chain 2exrA in training set T0547 471 :EPTRSASIW 2exrA 308 :SCGSVLYCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75157 # 1bob.471.209 read from T0547.t04.many.frag # found chain 1bob in template set Warning: unaligning (T0547)E471 (1bob)D210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1bob)K211 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1bob)F213 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :T 1bob 212 :K T0547 475 :SASIW 1bob 214 :RAKIS Number of specific fragments extracted= 2 number of extra gaps= 2 total=75159 # 2biqA.471.132 read from T0547.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)E471 (2biqA)G226 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (2biqA)S227 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (2biqA)C229 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :T 2biqA 228 :D T0547 475 :SASIW 2biqA 230 :TTIHY Number of specific fragments extracted= 2 number of extra gaps= 2 total=75161 # 1vh4A.471.148 read from T0547.t04.many.frag # found chain 1vh4A in training set T0547 471 :EPTRSASIW 1vh4A 147 :RPAKPLLLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=75162 # 1oygA.471.392 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)P472 (1oygA)K420 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1oygA)G421 because S (epsilon) conformation "forbidden" or filtered. T0547 471 :E 1oygA 419 :A T0547 474 :RSASIW 1oygA 422 :NNVVIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=75164 # 1pmhX.471.41 read from T0547.t04.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)P472 (1pmhX)G43 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1pmhX)N44 because D (zeta) conformation "forbidden" or filtered. T0547 471 :E 1pmhX 42 :P T0547 474 :RSASIW 1pmhX 45 :KYALRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=75166 # 1hq0A.471.248 read from T0547.t04.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)E471 (1hq0A)P968 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1hq0A)F972 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PTR 1hq0A 969 :EHG T0547 476 :ASIW 1hq0A 973 :GTSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=75168 # 1x8qA.471.63 read from T0547.t04.many.frag # found chain 1x8qA in training set Warning: unaligning (T0547)P472 (1x8qA)Q65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1x8qA)Y69 because E (beta_S) conformation "forbidden" or filtered. T0547 471 :E 1x8qA 64 :T T0547 473 :TRS 1x8qA 66 :DTF T0547 477 :SIW 1x8qA 70 :DVS Number of specific fragments extracted= 3 number of extra gaps= 2 total=75171 # 2a7bA.471.24 read from T0547.t04.many.frag # found chain 2a7bA in training set T0547 471 :EPTRSASIW 2a7bA 727 :NPSVTVITI Number of specific fragments extracted= 1 number of extra gaps= 0 total=75172 # 1gsoA.471.326 read from T0547.t04.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)P472 (1gsoA)W326 because E (beta_S) conformation "forbidden" or filtered. T0547 471 :E 1gsoA 325 :E T0547 473 :TRSASIW 1gsoA 327 :DERASLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=75174 # 1n7zA.471.30 read from T0547.t04.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)E471 (1n7zA)G31 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PTRSASIW 1n7zA 32 :PDKNTIFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=75175 # 1pq7A.471.112 read from T0547.t04.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)E471 (1pq7A)V128 because P (beta_P) conformation "forbidden" or filtered. T0547 472 :PTRSASIW 1pq7A 129 :AGSSATVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=75176 # 2bjfA.471.270 read from T0547.t04.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)P472 (2bjfA)K272 because E (beta_S) conformation "forbidden" or filtered. T0547 471 :E 2bjfA 271 :E T0547 473 :TRSASIW 2bjfA 273 :SDLTQYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=75178 # 1qyrA.471.167 read from T0547.t04.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)A476 (1qyrA)S189 because E (beta_S) conformation "forbidden" or filtered. T0547 471 :EPTRS 1qyrA 184 :PPKVD T0547 477 :SIW 1qyrA 190 :AVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75180 # 1ewnA.471.34 read from T0547.t04.many.frag # found chain 1ewnA in template set T0547 471 :EPTRSASIW 1ewnA 114 :GTELRGRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=75181 # 1pv5A.471.79 read from T0547.t04.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)R474 (1pv5A)S80 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EPT 1pv5A 77 :YPS T0547 475 :SASIW 1pv5A 81 :GILQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=75183 # 2fokA.471.457 read from T0547.t04.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)A476 (2fokA)G463 because E (beta_S) conformation "forbidden" or filtered. T0547 471 :EPTRS 2fokA 458 :SPIDY T0547 477 :SIW 2fokA 464 :VIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75185 # 1jc9A.471.149 read from T0547.t04.many.frag # found chain 1jc9A in template set Warning: unaligning (T0547)E471 (1jc9A)N150 because T (delta_L) conformation "forbidden" or filtered. T0547 472 :PTRSASIW 1jc9A 151 :DTRYAIYQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=75186 # 1tovA.471.27 read from T0547.t04.many.frag # found chain 1tovA in training set Warning: unaligning (T0547)A476 (1tovA)G164 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EPTRS 1tovA 159 :QMARR T0547 477 :SIW 1tovA 165 :EVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=75188 1m6eX expands to /projects/compbio/data/pdb/1m6e.pdb.gz 1m6eX:# 1m6eX.471.199 read from T0547.t04.many.frag # adding 1m6eX to template set # found chain 1m6eX in template set Warning: unaligning (T0547)A476 (1m6eX)M205 because E (beta_S) conformation "forbidden" or filtered. T0547 471 :EPTRS 1m6eX 200 :VPGGR T0547 477 :SIW 1m6eX 206 :VLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=75190 # 1jhsA.471.29 read from T0547.t04.many.frag # found chain 1jhsA in template set Warning: unaligning (T0547)R474 (1jhsA)T63 because G (3-10) conformation "forbidden" or filtered. T0547 471 :EPT 1jhsA 60 :VPD T0547 475 :SASIW 1jhsA 64 :QAVYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75192 # 1quqB.471.19 read from T0547.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)T473 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EP 1quqB 20 :FI T0547 474 :RS 1quqB 23 :KP T0547 477 :SIW 1quqB 26 :CFV Number of specific fragments extracted= 3 number of extra gaps= 2 total=75195 # 1dmhA.472.146 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)S475 (1dmhA)N150 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1dmhA)A151 because P (beta_P) conformation "forbidden" or filtered. T0547 472 :PTR 1dmhA 147 :PLP T0547 477 :SIWD 1dmhA 152 :KVEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=75197 # 2b5gA.472.49 read from T0547.t04.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (2b5gA)C54 because E (beta_S) conformation "forbidden" or filtered. T0547 472 :PT 2b5gA 50 :PF T0547 475 :S 2b5gA 53 :H T0547 477 :SIWD 2b5gA 55 :LVAE Number of specific fragments extracted= 3 number of extra gaps= 2 total=75200 # 1xszA.472.270 read from T0547.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)P472 (1xszA)T269 because G (3-10) conformation "forbidden" or filtered. T0547 473 :TRSASIWD 1xszA 270 :SAQATIQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=75201 # 2a5zA.472.115 read from T0547.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)T473 (2a5zA)E117 because L (left) conformation "forbidden" or filtered. T0547 472 :P 2a5zA 116 :S T0547 474 :RSASIWD 2a5zA 118 :LEVTVYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=75203 # 2f8lA.472.293 read from T0547.t04.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)Q282 Warning: unaligning (T0547)T473 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)A283 Warning: unaligning (T0547)S477 (2f8lA)I287 because P (beta_P) conformation "forbidden" or filtered. T0547 474 :RSA 2f8lA 284 :RKS T0547 478 :IWD 2f8lA 288 :LIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=75205 # 1oygA.472.393 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)P472 (1oygA)K420 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1oygA)G421 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1oygA)S428 because Y (epsilon') conformation "forbidden" or filtered. T0547 474 :RSASIW 1oygA 422 :NNVVIT Number of specific fragments extracted= 1 number of extra gaps= 2 total=75206 # 1vqoA.472.36 read from T0547.t04.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)P472 (1vqoA)D36 because T (delta_L) conformation "forbidden" or filtered. T0547 473 :TRSASIWD 1vqoA 37 :VIAGTVVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=75207 # 1xv5A.472.265 read from T0547.t04.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)T473 (1xv5A)N1266 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xv5A)Y1275 T0547 472 :P 1xv5A 1265 :P T0547 474 :RSASIW 1xv5A 1267 :QPAQIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=75209 # 2biqA.472.133 read from T0547.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)P472 (2biqA)S227 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (2biqA)T231 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :TRS 2biqA 228 :DCT T0547 477 :SIWD 2biqA 232 :IHYN Number of specific fragments extracted= 2 number of extra gaps= 2 total=75211 # 1gsoA.472.327 read from T0547.t04.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)P472 (1gsoA)W326 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1gsoA)A330 because P (beta_P) conformation "forbidden" or filtered. T0547 473 :TRS 1gsoA 327 :DER T0547 477 :SIWD 1gsoA 331 :SLGV Number of specific fragments extracted= 2 number of extra gaps= 2 total=75213 # 1vh4A.472.149 read from T0547.t04.many.frag # found chain 1vh4A in training set T0547 472 :PTRSASIWD 1vh4A 148 :PAKPLLLMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=75214 # 1hf2A.472.155 read from T0547.t04.many.frag # found chain 1hf2A in template set T0547 472 :PTRSASIWD 1hf2A 156 :GQAVVAALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=75215 # 1bob.472.210 read from T0547.t04.many.frag # found chain 1bob in template set Warning: unaligning (T0547)P472 (1bob)K211 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1bob)F213 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :T 1bob 212 :K T0547 475 :SASIWD 1bob 214 :RAKISQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=75217 # 2bjfA.472.271 read from T0547.t04.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)P472 (2bjfA)K272 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :TRSASIWD 2bjfA 273 :SDLTQYTS Number of specific fragments extracted= 1 number of extra gaps= 1 total=75218 # 1pq7A.472.113 read from T0547.t04.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)D480 (1pq7A)G137 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PTRSASIW 1pq7A 129 :AGSSATVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=75219 # 1pv5A.472.80 read from T0547.t04.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)R474 (1pv5A)S80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1pv5A)I82 because E (beta_S) conformation "forbidden" or filtered. T0547 472 :PT 1pv5A 78 :PS T0547 475 :S 1pv5A 81 :G T0547 477 :SIWD 1pv5A 83 :LQFY Number of specific fragments extracted= 3 number of extra gaps= 2 total=75222 # 1n7zA.472.31 read from T0547.t04.many.frag # found chain 1n7zA in template set T0547 472 :PTRSASIWD 1n7zA 32 :PDKNTIFIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=75223 # 1pmhX.472.42 read from T0547.t04.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)P472 (1pmhX)G43 because T (delta_L) conformation "forbidden" or filtered. T0547 473 :TRSASIWD 1pmhX 44 :NKYALRLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=75224 1z8kA expands to /projects/compbio/data/pdb/1z8k.pdb.gz 1z8kA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 231, because occupancy 0.330 <= existing 0.340 in 1z8kA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 234, because occupancy 0.330 <= existing 0.340 in 1z8kA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 237, because occupancy 0.330 <= existing 0.340 in 1z8kA Skipped atom 951, because occupancy 0.350 <= existing 0.650 in 1z8kA Skipped atom 953, because occupancy 0.350 <= existing 0.650 in 1z8kA Skipped atom 955, because occupancy 0.350 <= existing 0.650 in 1z8kA Skipped atom 957, because occupancy 0.350 <= existing 0.650 in 1z8kA # 1z8kA.472.19 read from T0547.t04.many.frag # adding 1z8kA to template set # found chain 1z8kA in template set Warning: unaligning (T0547)P472 because first residue in template chain is (1z8kA)K20 T0547 473 :TRSASIWD 1z8kA 21 :VQELSVYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75225 # 2exrA.472.308 read from T0547.t04.many.frag # found chain 2exrA in training set T0547 472 :PTRSASIWD 2exrA 309 :CGSVLYCLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75226 # 1p3dA.472.335 read from T0547.t04.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)R474 (1p3dA)G338 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PT 1p3dA 336 :PN T0547 475 :SASIWD 1p3dA 339 :KVRLVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=75228 # 1m6eX.472.200 read from T0547.t04.many.frag # found chain 1m6eX in template set Warning: unaligning (T0547)W479 (1m6eX)T208 because D (zeta) conformation "forbidden" or filtered. T0547 472 :PTRSASI 1m6eX 201 :PGGRMVL T0547 480 :D 1m6eX 209 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=75230 # 2fokA.472.458 read from T0547.t04.many.frag # found chain 2fokA in template set T0547 472 :PTRSASIWD 2fokA 459 :PIDYGVIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=75231 # 1y08A.472.243 read from T0547.t04.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)P472 (1y08A)I260 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1y08A)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :TRSASIW 1y08A 261 :NHVINLW Number of specific fragments extracted= 1 number of extra gaps= 2 total=75232 # 1jc9A.472.150 read from T0547.t04.many.frag # found chain 1jc9A in template set Warning: unaligning (T0547)W479 (1jc9A)Q158 because P (beta_P) conformation "forbidden" or filtered. T0547 472 :PTRSASI 1jc9A 151 :DTRYAIY T0547 480 :D 1jc9A 159 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=75234 # 1hq0A.472.249 read from T0547.t04.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)S475 (1hq0A)F972 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1hq0A)T977 because E (beta_S) conformation "forbidden" or filtered. T0547 472 :PTR 1hq0A 969 :EHG T0547 476 :ASIW 1hq0A 973 :GTSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=75236 # 1qyrA.472.168 read from T0547.t04.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)S477 (1qyrA)A190 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PTRSA 1qyrA 185 :PKVDS T0547 478 :IWD 1qyrA 191 :VVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=75238 2b5lC expands to /projects/compbio/data/pdb/2b5l.pdb.gz 2b5lC:# 2b5lC.472.167 read from T0547.t04.many.frag # adding 2b5lC to template set # found chain 2b5lC in template set Warning: unaligning (T0547)R474 (2b5lC)F170 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE in next template residue (2b5lC)R173 Warning: unaligning (T0547)S477 because of BadResidue code BAD_PEPTIDE at template residue (2b5lC)R173 T0547 472 :PT 2b5lC 168 :GG T0547 475 :S 2b5lC 171 :H T0547 478 :IWD 2b5lC 174 :EYS Number of specific fragments extracted= 3 number of extra gaps= 2 total=75241 # 1x8qA.472.64 read from T0547.t04.many.frag # found chain 1x8qA in training set Warning: unaligning (T0547)P472 (1x8qA)Q65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1x8qA)E73 because P (beta_P) conformation "forbidden" or filtered. T0547 473 :TRSASIW 1x8qA 66 :DTFYDVS Number of specific fragments extracted= 1 number of extra gaps= 2 total=75242 # 3pviA.472.62 read from T0547.t04.many.frag # found chain 3pviA in training set Warning: unaligning (T0547)P472 (3pviA)A63 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (3pviA)Q65 because P (beta_P) conformation "forbidden" or filtered. T0547 473 :T 3pviA 64 :G T0547 475 :SASIWD 3pviA 66 :EYELKS Number of specific fragments extracted= 2 number of extra gaps= 2 total=75244 # 1dmhA.473.147 read from T0547.t04.many.frag # found chain 1dmhA in training set T0547 473 :TRSASIWDI 1dmhA 148 :LPNAKVEIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=75245 # 1xszA.473.271 read from T0547.t04.many.frag # found chain 1xszA in training set T0547 473 :TRSASIWDI 1xszA 270 :SAQATIQVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=75246 # 2biqA.473.134 read from T0547.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)R474 (2biqA)C229 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2biqA)N235 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :T 2biqA 228 :D T0547 475 :SASIW 2biqA 230 :TTIHY T0547 481 :I 2biqA 236 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=75249 # 2a5zA.473.116 read from T0547.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)T473 (2a5zA)E117 because L (left) conformation "forbidden" or filtered. T0547 474 :RSASIWDI 2a5zA 118 :LEVTVYFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=75250 # 2b5gA.473.50 read from T0547.t04.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :T 2b5gA 51 :F T0547 475 :SASIWDI 2b5gA 53 :HCLVAEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75252 # 1bob.473.211 read from T0547.t04.many.frag # found chain 1bob in template set Warning: unaligning (T0547)R474 (1bob)F213 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1bob)Q219 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :T 1bob 212 :K T0547 475 :SASIW 1bob 214 :RAKIS T0547 481 :I 1bob 220 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=75255 # 1p3dA.473.336 read from T0547.t04.many.frag # found chain 1p3dA in training set T0547 473 :TRSASIWDI 1p3dA 337 :NGKVRLVDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=75256 # 1vqoA.473.37 read from T0547.t04.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)A476 (1vqoA)G40 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :TRS 1vqoA 37 :VIA T0547 477 :SIWDI 1vqoA 41 :TVVDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=75258 # 1z8kA.473.20 read from T0547.t04.many.frag # found chain 1z8kA in template set T0547 473 :TRSASIWDI 1z8kA 21 :VQELSVYEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=75259 # 2bjfA.473.272 read from T0547.t04.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)I478 (2bjfA)Y278 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :TRSAS 2bjfA 273 :SDLTQ T0547 479 :WDI 2bjfA 279 :TSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=75261 # 2f8lA.473.294 read from T0547.t04.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)T473 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)A283 Warning: unaligning (T0547)D480 (2f8lA)L290 because E (beta_S) conformation "forbidden" or filtered. T0547 474 :RSASIW 2f8lA 284 :RKSILI T0547 481 :I 2f8lA 291 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=75263 # 1gsoA.473.328 read from T0547.t04.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)S475 (1gsoA)R329 because P (beta_P) conformation "forbidden" or filtered. T0547 473 :TR 1gsoA 327 :DE T0547 476 :ASIWDI 1gsoA 330 :ASLGVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75265 # 1hf2A.473.156 read from T0547.t04.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)D480 (1hf2A)D164 because D (zeta) conformation "forbidden" or filtered. T0547 473 :TRSASIW 1hf2A 157 :QAVVAAL T0547 481 :I 1hf2A 165 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=75267 # 1oygA.473.394 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)T473 (1oygA)G421 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1oygA)T427 because P (beta_P) conformation "forbidden" or filtered. T0547 474 :RSASI 1oygA 422 :NNVVI T0547 480 :DI 1oygA 428 :SY Number of specific fragments extracted= 2 number of extra gaps= 2 total=75269 # 1pq7A.473.114 read from T0547.t04.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)R474 (1pq7A)S131 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1pq7A)G137 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :T 1pq7A 130 :G T0547 475 :SASIW 1pq7A 132 :SATVA T0547 481 :I 1pq7A 138 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=75272 # 1l7dA.473.284 read from T0547.t04.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)R474 (1l7dA)P286 because P (beta_P) conformation "forbidden" or filtered. T0547 473 :T 1l7dA 285 :K T0547 475 :SASIWDI 1l7dA 287 :GSVIIDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=75274 # 1pv5A.473.81 read from T0547.t04.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)R474 (1pv5A)S80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1pv5A)Y86 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :T 1pv5A 79 :S T0547 475 :SASIW 1pv5A 81 :GILQF T0547 481 :I 1pv5A 87 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=75277 # 1y08A.473.244 read from T0547.t04.many.frag # found chain 1y08A in template set T0547 473 :TRSASIWDI 1y08A 261 :NHVINLWGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=75278 # 1pmhX.473.43 read from T0547.t04.many.frag # found chain 1pmhX in training set T0547 473 :TRSASIWDI 1pmhX 44 :NKYALRLDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=75279 # 1vh4A.473.150 read from T0547.t04.many.frag # found chain 1vh4A in training set T0547 473 :TRSASIWDI 1vh4A 149 :AKPLLLMHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=75280 # 1m6eX.473.201 read from T0547.t04.many.frag # found chain 1m6eX in template set T0547 473 :TRSASIWDI 1m6eX 202 :GGRMVLTIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75281 # 1hl9A.473.316 read from T0547.t04.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)R474 (1hl9A)G318 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1hl9A)N320 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1hl9A)N320 T0547 473 :T 1hl9A 317 :K T0547 477 :SIWDI 1hl9A 321 :LLLNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75283 # 2msbA.473.45 read from T0547.t04.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)R474 (2msbA)T153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2msbA)I159 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :T 2msbA 152 :K T0547 475 :SASIW 2msbA 154 :SAFLG T0547 481 :I 2msbA 160 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=75286 # 3pviA.473.63 read from T0547.t04.many.frag # found chain 3pviA in training set Warning: unaligning (T0547)R474 (3pviA)Q65 because P (beta_P) conformation "forbidden" or filtered. T0547 473 :T 3pviA 64 :G T0547 475 :SASIWDI 3pviA 66 :EYELKSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=75288 # 1jc9A.473.151 read from T0547.t04.many.frag # found chain 1jc9A in template set Warning: unaligning (T0547)D480 (1jc9A)D159 because L (left) conformation "forbidden" or filtered. T0547 473 :TRSASIW 1jc9A 152 :TRYAIYQ T0547 481 :I 1jc9A 160 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=75290 # 1j8rA.473.33 read from T0547.t04.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)R474 (1j8rA)G35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1j8rA)W41 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :T 1j8rA 34 :P T0547 475 :SASIW 1j8rA 36 :IATVT T0547 481 :I 1j8rA 42 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=75293 # 1dzkA.473.12 read from T0547.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)R474 (1dzkA)G14 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1dzkA)W16 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1dzkA)Y20 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :T 1dzkA 13 :S T0547 475 :S 1dzkA 15 :K T0547 477 :SIW 1dzkA 17 :ITS T0547 481 :I 1dzkA 21 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=75297 # 1vkdA.473.290 read from T0547.t04.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)R474 (1vkdA)N280 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1vkdA)V282 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1vkdA)V282 T0547 473 :T 1vkdA 279 :P T0547 477 :SIWDI 1vkdA 283 :FPCAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=75299 # 1xv5A.473.266 read from T0547.t04.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)D480 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xv5A)Y1275 T0547 473 :TRSASIW 1xv5A 1266 :NQPAQIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75300 # 1b65A.473.286 read from T0547.t04.many.frag # found chain 1b65A in template set Warning: unaligning (T0547)A476 (1b65A)D290 because D (zeta) conformation "forbidden" or filtered. T0547 473 :TRS 1b65A 287 :NSG T0547 477 :SIWDI 1b65A 291 :IFIAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=75302 # 1dmhA.474.148 read from T0547.t04.many.frag # found chain 1dmhA in training set T0547 474 :RSASIWDIT 1dmhA 149 :PNAKVEIWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=75303 # 2biqA.474.135 read from T0547.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)R474 (2biqA)C229 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASIWDIT 2biqA 230 :TTIHYNYM Number of specific fragments extracted= 1 number of extra gaps= 1 total=75304 # 1p3dA.474.337 read from T0547.t04.many.frag # found chain 1p3dA in training set T0547 474 :RSASIWDIT 1p3dA 338 :GKVRLVDDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=75305 # 1bob.474.212 read from T0547.t04.many.frag # found chain 1bob in template set Warning: unaligning (T0547)R474 (1bob)F213 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASIWDIT 1bob 214 :RAKISQFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=75306 # 2bjfA.474.273 read from T0547.t04.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)D480 (2bjfA)S280 because E (beta_S) conformation "forbidden" or filtered. T0547 474 :RSASIW 2bjfA 274 :DLTQYT T0547 481 :IT 2bjfA 281 :CM Number of specific fragments extracted= 2 number of extra gaps= 1 total=75308 # 1xszA.474.272 read from T0547.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)R474 (1xszA)A271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1xszA)V277 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASIW 1xszA 272 :QATIQ T0547 481 :IT 1xszA 278 :YT Number of specific fragments extracted= 2 number of extra gaps= 2 total=75310 # 1z8kA.474.21 read from T0547.t04.many.frag # found chain 1z8kA in template set T0547 474 :RSASIWDIT 1z8kA 22 :QELSVYEIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=75311 # 1vqoA.474.38 read from T0547.t04.many.frag # found chain 1vqoA in template set T0547 474 :RSASIWDIT 1vqoA 38 :IAGTVVDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75312 # 1hf2A.474.157 read from T0547.t04.many.frag # found chain 1hf2A in template set T0547 474 :RSASIWDIT 1hf2A 158 :AVVAALDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=75313 # 2a5zA.474.117 read from T0547.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)R474 (2a5zA)L118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2a5zA)F124 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASIW 2a5zA 119 :EVTVY T0547 481 :IT 2a5zA 125 :KT Number of specific fragments extracted= 2 number of extra gaps= 2 total=75315 # 1l7dA.474.285 read from T0547.t04.many.frag # found chain 1l7dA in template set T0547 474 :RSASIWDIT 1l7dA 286 :PGSVIIDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=75316 # 1vkdA.474.291 read from T0547.t04.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)R474 (1vkdA)N280 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1vkdA)V282 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1vkdA)V282 Warning: unaligning (T0547)D480 (1vkdA)A286 because E (beta_S) conformation "forbidden" or filtered. T0547 477 :SIW 1vkdA 283 :FPC T0547 481 :IT 1vkdA 287 :AL Number of specific fragments extracted= 2 number of extra gaps= 2 total=75318 # 1hl9A.474.317 read from T0547.t04.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1hl9A)N320 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1hl9A)N320 T0547 474 :R 1hl9A 318 :G T0547 477 :SIWDIT 1hl9A 321 :LLLNVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=75320 # 1pv5A.474.82 read from T0547.t04.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)R474 (1pv5A)S80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1pv5A)G81 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1pv5A)Y86 because E (beta_S) conformation "forbidden" or filtered. T0547 476 :ASIW 1pv5A 82 :ILQF T0547 481 :IT 1pv5A 87 :IS Number of specific fragments extracted= 2 number of extra gaps= 2 total=75322 # 1y08A.474.245 read from T0547.t04.many.frag # found chain 1y08A in template set T0547 474 :RSASIWDIT 1y08A 262 :HVINLWGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=75323 # 1dzkA.474.13 read from T0547.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)R474 (1dzkA)G14 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1dzkA)Y20 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASIW 1dzkA 15 :KWITS T0547 481 :IT 1dzkA 21 :IG Number of specific fragments extracted= 2 number of extra gaps= 2 total=75325 # 1pq7A.474.115 read from T0547.t04.many.frag # found chain 1pq7A in training set T0547 474 :RSASIWDIT 1pq7A 131 :SSATVAGWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=75326 # 2b5gA.474.51 read from T0547.t04.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2b5gA)E58 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASIW 2b5gA 53 :HCLVA T0547 481 :IT 2b5gA 59 :VP Number of specific fragments extracted= 2 number of extra gaps= 2 total=75328 1sr4C expands to /projects/compbio/data/pdb/1sr4.pdb.gz 1sr4C:# 1sr4C.474.60 read from T0547.t04.many.frag # adding 1sr4C to template set # found chain 1sr4C in template set Warning: unaligning (T0547)R474 (1sr4C)D81 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1sr4C)Q87 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASIW 1sr4C 82 :GGTLV T0547 481 :IT 1sr4C 88 :FK Number of specific fragments extracted= 2 number of extra gaps= 2 total=75330 # 1oygA.474.395 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)A476 (1oygA)V424 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (1oygA)V425 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1oygA)S428 because Y (epsilon') conformation "forbidden" or filtered. T0547 474 :RS 1oygA 422 :NN T0547 478 :IW 1oygA 426 :IT T0547 481 :IT 1oygA 429 :YM Number of specific fragments extracted= 3 number of extra gaps= 2 total=75333 # 1j8rA.474.34 read from T0547.t04.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)W479 (1j8rA)T40 because G (3-10) conformation "forbidden" or filtered. T0547 474 :RSASI 1j8rA 35 :GIATV T0547 480 :DIT 1j8rA 41 :WNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=75335 # 3pviA.474.64 read from T0547.t04.many.frag # found chain 3pviA in training set Warning: unaligning (T0547)R474 (3pviA)Q65 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (3pviA)E68 because P (beta_P) conformation "forbidden" or filtered. T0547 475 :SA 3pviA 66 :EY T0547 478 :IWDIT 3pviA 69 :LKSIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=75337 # 1pmhX.474.44 read from T0547.t04.many.frag # found chain 1pmhX in training set T0547 474 :RSASIWDIT 1pmhX 45 :KYALRLDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75338 # 1azo.474.120 read from T0547.t04.many.frag # found chain 1azo in training set T0547 474 :RSASIWDIT 1azo 118 :KRVLWIPVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75339 # 2cygA.474.229 read from T0547.t04.many.frag # found chain 2cygA in training set T0547 474 :RSASIWDIT 2cygA 258 :VAVVVSESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=75340 # 1m6eX.474.202 read from T0547.t04.many.frag # found chain 1m6eX in template set T0547 474 :RSASIWDIT 1m6eX 203 :GRMVLTILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=75341 # 1b65A.474.287 read from T0547.t04.many.frag # found chain 1b65A in template set Warning: unaligning (T0547)A476 (1b65A)D290 because D (zeta) conformation "forbidden" or filtered. T0547 474 :RS 1b65A 288 :SG T0547 477 :SIWDIT 1b65A 291 :IFIAFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=75343 # 1gsoA.474.329 read from T0547.t04.many.frag # found chain 1gsoA in training set T0547 474 :RSASIWDIT 1gsoA 328 :ERASLGVVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=75344 # 1a12A.474.229 read from T0547.t04.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)A476 (1a12A)V240 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1a12A)D244 because Y (epsilon') conformation "forbidden" or filtered. T0547 474 :RS 1a12A 238 :GH T0547 477 :SIW 1a12A 241 :RFQ T0547 481 :IT 1a12A 245 :AF Number of specific fragments extracted= 3 number of extra gaps= 2 total=75347 # 2f8lA.474.295 read from T0547.t04.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)S475 (2f8lA)K285 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2f8lA)L290 because E (beta_S) conformation "forbidden" or filtered. T0547 474 :R 2f8lA 284 :R T0547 476 :ASIW 2f8lA 286 :SILI T0547 481 :IT 2f8lA 291 :EK Number of specific fragments extracted= 3 number of extra gaps= 2 total=75350 # 1dmhA.475.149 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)S475 (1dmhA)N150 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T482 (1dmhA)H157 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIWDI 1dmhA 151 :AKVEIW T0547 483 :C 1dmhA 158 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=75352 # 2biqA.475.136 read from T0547.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)C483 (2biqA)C238 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASIWDIT 2biqA 230 :TTIHYNYM Number of specific fragments extracted= 1 number of extra gaps= 1 total=75353 # 1p3dA.475.338 read from T0547.t04.many.frag # found chain 1p3dA in training set T0547 475 :SASIWDITC 1p3dA 339 :KVRLVDDYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=75354 # 1xszA.475.273 read from T0547.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)D480 (1xszA)V277 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASIW 1xszA 272 :QATIQ T0547 481 :ITC 1xszA 278 :YTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=75356 # 1j8rA.475.35 read from T0547.t04.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)W479 (1j8rA)T40 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1j8rA)W41 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASI 1j8rA 36 :IATV T0547 481 :ITC 1j8rA 42 :NQC Number of specific fragments extracted= 2 number of extra gaps= 1 total=75358 # 2bjfA.475.274 read from T0547.t04.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)A476 (2bjfA)T276 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2bjfA)S280 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :S 2bjfA 275 :L T0547 477 :SIW 2bjfA 277 :QYT T0547 481 :ITC 2bjfA 281 :CMC Number of specific fragments extracted= 3 number of extra gaps= 2 total=75361 # 1vkdA.475.292 read from T0547.t04.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1vkdA)V282 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1vkdA)V282 T0547 477 :SIWDITC 1vkdA 283 :FPCAALC Number of specific fragments extracted= 1 number of extra gaps= 1 total=75362 # 1bob.475.213 read from T0547.t04.many.frag # found chain 1bob in template set T0547 475 :SASIWDITC 1bob 214 :RAKISQFLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=75363 # 1z8kA.475.22 read from T0547.t04.many.frag # found chain 1z8kA in template set T0547 475 :SASIWDITC 1z8kA 23 :ELSVYEINE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75364 # 1hl9A.475.318 read from T0547.t04.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1hl9A)N320 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1hl9A)N320 Warning: unaligning (T0547)T482 (1hl9A)G326 because D (zeta) conformation "forbidden" or filtered. T0547 477 :SIWDI 1hl9A 321 :LLLNV T0547 483 :C 1hl9A 327 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=75366 # 1hf2A.475.158 read from T0547.t04.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)I478 (1hf2A)A162 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SAS 1hf2A 159 :VVA T0547 479 :WDITC 1hf2A 163 :LDLQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=75368 # 1sr4C.475.61 read from T0547.t04.many.frag # found chain 1sr4C in template set Warning: unaligning (T0547)W479 (1sr4C)V86 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASI 1sr4C 82 :GGTL T0547 480 :DITC 1sr4C 87 :QFKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75370 # 1vqoA.475.39 read from T0547.t04.many.frag # found chain 1vqoA in template set T0547 475 :SASIWDITC 1vqoA 39 :AGTVVDIEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=75371 # 1y08A.475.246 read from T0547.t04.many.frag # found chain 1y08A in template set T0547 475 :SASIWDITC 1y08A 263 :VINLWGADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=75372 # 1pq7A.475.116 read from T0547.t04.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)I481 (1pq7A)W138 because G (3-10) conformation "forbidden" or filtered. T0547 475 :SASIWD 1pq7A 132 :SATVAG T0547 482 :TC 1pq7A 139 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=75374 # 1b65A.475.288 read from T0547.t04.many.frag # found chain 1b65A in template set Warning: unaligning (T0547)A476 (1b65A)D290 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1b65A)A294 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)C483 (1b65A)T297 because G (3-10) conformation "forbidden" or filtered. T0547 475 :S 1b65A 289 :G T0547 477 :SIW 1b65A 291 :IFI T0547 481 :IT 1b65A 295 :FS Number of specific fragments extracted= 3 number of extra gaps= 3 total=75377 # 2a5zA.475.118 read from T0547.t04.many.frag # found chain 2a5zA in template set T0547 475 :SASIWDITC 2a5zA 119 :EVTVYFKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=75378 # 1mfmA.475.80 read from T0547.t04.many.frag # found chain 1mfmA in training set Warning: unaligning (T0547)W479 (1mfmA)G85 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1mfmA)N86 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASI 1mfmA 81 :VGDL T0547 481 :ITC 1mfmA 87 :VTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=75380 # 1l7dA.475.286 read from T0547.t04.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)S475 (1l7dA)G287 because T (delta_L) conformation "forbidden" or filtered. T0547 476 :ASIWDITC 1l7dA 288 :SVIIDLAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=75381 # 3pviA.475.65 read from T0547.t04.many.frag # found chain 3pviA in training set T0547 475 :SASIWDITC 3pviA 66 :EYELKSINI Number of specific fragments extracted= 1 number of extra gaps= 0 total=75382 # 1azo.475.121 read from T0547.t04.many.frag # found chain 1azo in training set Warning: unaligning (T0547)D480 (1azo)P124 because P (beta_P) conformation "forbidden" or filtered. T0547 475 :SASIW 1azo 119 :RVLWI T0547 481 :ITC 1azo 125 :VEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=75384 # 1pv5A.475.83 read from T0547.t04.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)S475 (1pv5A)G81 because S (epsilon) conformation "forbidden" or filtered. T0547 476 :ASIWDITC 1pv5A 82 :ILQFYISV Number of specific fragments extracted= 1 number of extra gaps= 1 total=75385 # 2cygA.475.230 read from T0547.t04.many.frag # found chain 2cygA in training set Warning: unaligning (T0547)D480 (2cygA)E264 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASIW 2cygA 259 :AVVVS T0547 481 :ITC 2cygA 265 :SGW Number of specific fragments extracted= 2 number of extra gaps= 1 total=75387 # 1m6eX.475.203 read from T0547.t04.many.frag # found chain 1m6eX in template set T0547 475 :SASIWDITC 1m6eX 204 :RMVLTILGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=75388 # 1a12A.475.230 read from T0547.t04.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)D480 (1a12A)D244 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)C483 because of BadResidue code BAD_PEPTIDE in next template residue (1a12A)G248 T0547 475 :SASIW 1a12A 239 :HVRFQ T0547 481 :IT 1a12A 245 :AF Number of specific fragments extracted= 2 number of extra gaps= 2 total=75390 # 1dzkA.475.14 read from T0547.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)A476 (1dzkA)W16 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :S 1dzkA 15 :K T0547 477 :SIWDITC 1dzkA 17 :ITSYIGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=75392 # 1oygA.475.396 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)D480 (1oygA)S428 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)C483 (1oygA)T431 because S (epsilon) conformation "forbidden" or filtered. T0547 475 :SASIW 1oygA 423 :NVVIT T0547 481 :IT 1oygA 429 :YM Number of specific fragments extracted= 2 number of extra gaps= 2 total=75394 # 1yqyA.475.239 read from T0547.t04.many.frag # found chain 1yqyA in template set T0547 475 :SASIWDITC 1yqyA 497 :ERLKWRIQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75395 # 1a8d.475.166 read from T0547.t04.many.frag # found chain 1a8d in training set T0547 475 :SASIWDITC 1a8d 167 :KWVFITITN Number of specific fragments extracted= 1 number of extra gaps= 0 total=75396 # 1kqfA.475.609 read from T0547.t04.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)S475 (1kqfA)E610 because P (beta_P) conformation "forbidden" or filtered. T0547 476 :ASIWDITC 1kqfA 611 :VFRLPSTC Number of specific fragments extracted= 1 number of extra gaps= 1 total=75397 # 1j8rA.476.36 read from T0547.t04.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)W479 (1j8rA)T40 because G (3-10) conformation "forbidden" or filtered. T0547 476 :ASI 1j8rA 37 :ATV T0547 480 :DITCD 1j8rA 41 :WNQCN Number of specific fragments extracted= 2 number of extra gaps= 1 total=75399 # 1dmhA.476.150 read from T0547.t04.many.frag # found chain 1dmhA in training set T0547 476 :ASIWDITCD 1dmhA 151 :AKVEIWHAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=75400 # 1xszA.476.274 read from T0547.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)D484 (1xszA)N281 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIWDITC 1xszA 273 :ATIQVYTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=75401 # 2biqA.476.137 read from T0547.t04.many.frag # found chain 2biqA in template set T0547 476 :ASIWDITCD 2biqA 231 :TIHYNYMCY Number of specific fragments extracted= 1 number of extra gaps= 0 total=75402 # 1vkdA.476.293 read from T0547.t04.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1vkdA)V282 Warning: unaligning (T0547)S477 (1vkdA)F283 because D (zeta) conformation "forbidden" or filtered. T0547 478 :IWDITCD 1vkdA 284 :PCAALCD Number of specific fragments extracted= 1 number of extra gaps= 1 total=75403 # 1hl9A.476.319 read from T0547.t04.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1hl9A)N320 Warning: unaligning (T0547)W479 (1hl9A)L323 because P (beta_P) conformation "forbidden" or filtered. T0547 477 :SI 1hl9A 321 :LL T0547 480 :DITCD 1hl9A 324 :NVGPK Number of specific fragments extracted= 2 number of extra gaps= 2 total=75405 # 1p3dA.476.339 read from T0547.t04.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)A476 (1p3dA)V340 because E (beta_S) conformation "forbidden" or filtered. T0547 477 :SIWDITCD 1p3dA 341 :RLVDDYGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=75406 # 1y08A.476.247 read from T0547.t04.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)D480 (1y08A)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIW 1y08A 264 :INLW T0547 481 :ITCD 1y08A 269 :ADFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=75408 # 2bjfA.476.275 read from T0547.t04.many.frag # found chain 2bjfA in training set T0547 476 :ASIWDITCD 2bjfA 276 :TQYTSCMCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75409 # 1z8kA.476.23 read from T0547.t04.many.frag # found chain 1z8kA in template set Warning: unaligning (T0547)D480 (1z8kA)E28 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (1z8kA)L32 because T (delta_L) conformation "forbidden" or filtered. T0547 476 :ASIW 1z8kA 24 :LSVY T0547 481 :ITC 1z8kA 29 :INE Number of specific fragments extracted= 2 number of extra gaps= 2 total=75411 # 1mfmA.476.81 read from T0547.t04.many.frag # found chain 1mfmA in training set T0547 476 :ASIWDITCD 1mfmA 82 :GDLGNVTAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=75412 # 1b65A.476.289 read from T0547.t04.many.frag # found chain 1b65A in template set Warning: unaligning (T0547)A476 (1b65A)D290 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1b65A)A294 because E (beta_S) conformation "forbidden" or filtered. T0547 477 :SIW 1b65A 291 :IFI T0547 481 :ITCD 1b65A 295 :FSTA Number of specific fragments extracted= 2 number of extra gaps= 2 total=75414 # 1azo.476.122 read from T0547.t04.many.frag # found chain 1azo in training set Warning: unaligning (T0547)D480 (1azo)P124 because P (beta_P) conformation "forbidden" or filtered. T0547 476 :ASIW 1azo 120 :VLWI T0547 481 :ITCD 1azo 125 :VEGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=75416 # 1pq7A.476.117 read from T0547.t04.many.frag # found chain 1pq7A in training set T0547 476 :ASIWDITCD 1pq7A 133 :ATVAGWGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=75417 # 1sr4C.476.62 read from T0547.t04.many.frag # found chain 1sr4C in template set T0547 476 :ASIWDITCD 1sr4C 83 :GTLVQFKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=75418 # 1m6eX.476.204 read from T0547.t04.many.frag # found chain 1m6eX in template set Warning: unaligning (T0547)D480 (1m6eX)I209 because P (beta_P) conformation "forbidden" or filtered. T0547 476 :ASIW 1m6eX 205 :MVLT T0547 481 :ITCD 1m6eX 210 :LGRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=75420 # 1dzkA.476.15 read from T0547.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)D480 (1dzkA)Y20 because E (beta_S) conformation "forbidden" or filtered. T0547 476 :ASIW 1dzkA 16 :WITS T0547 481 :ITCD 1dzkA 21 :IGSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=75422 # 3pviA.476.66 read from T0547.t04.many.frag # found chain 3pviA in training set T0547 476 :ASIWDITCD 3pviA 67 :YELKSINID Number of specific fragments extracted= 1 number of extra gaps= 0 total=75423 # 1a8d.476.167 read from T0547.t04.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)A476 (1a8d)W168 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1a8d)I171 because P (beta_P) conformation "forbidden" or filtered. T0547 477 :SI 1a8d 169 :VF T0547 480 :DITCD 1a8d 172 :TITND Number of specific fragments extracted= 2 number of extra gaps= 2 total=75425 # 1bob.476.214 read from T0547.t04.many.frag # found chain 1bob in template set T0547 476 :ASIWDITCD 1bob 215 :AKISQFLIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=75426 # 2cygA.476.231 read from T0547.t04.many.frag # found chain 2cygA in training set Warning: unaligning (T0547)D480 (2cygA)E264 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)T482 (2cygA)G266 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIW 2cygA 260 :VVVS T0547 481 :I 2cygA 265 :S T0547 483 :CD 2cygA 267 :WP Number of specific fragments extracted= 3 number of extra gaps= 2 total=75429 # 1hf2A.476.159 read from T0547.t04.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)I478 (1hf2A)A162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1hf2A)D164 because D (zeta) conformation "forbidden" or filtered. T0547 476 :AS 1hf2A 160 :VA T0547 479 :W 1hf2A 163 :L T0547 481 :ITCD 1hf2A 165 :LQTS Number of specific fragments extracted= 3 number of extra gaps= 2 total=75432 # 1kt6A.476.39 read from T0547.t04.many.frag # found chain 1kt6A in training set Warning: unaligning (T0547)A476 (1kt6A)N40 because L (left) conformation "forbidden" or filtered. T0547 477 :SIWDITCD 1kt6A 41 :IVAEFSVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=75433 # 1yqyA.476.240 read from T0547.t04.many.frag # found chain 1yqyA in template set Warning: unaligning (T0547)D484 (1yqyA)S506 because P (beta_P) conformation "forbidden" or filtered. T0547 476 :ASIWDITC 1yqyA 498 :RLKWRIQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=75434 # 1oygA.476.397 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)D480 (1oygA)S428 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)C483 (1oygA)T431 because S (epsilon) conformation "forbidden" or filtered. T0547 476 :ASIW 1oygA 424 :VVIT T0547 481 :IT 1oygA 429 :YM T0547 484 :D 1oygA 432 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=75437 # 1pv5A.476.84 read from T0547.t04.many.frag # found chain 1pv5A in training set T0547 476 :ASIWDITCD 1pv5A 82 :ILQFYISVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=75438 # 2a5zA.476.119 read from T0547.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)D480 (2a5zA)F124 because E (beta_S) conformation "forbidden" or filtered. T0547 476 :ASIW 2a5zA 120 :VTVY T0547 481 :ITCD 2a5zA 125 :KTPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=75440 # 1f60A.476.337 read from T0547.t04.many.frag # found chain 1f60A in training set T0547 476 :ASIWDITCD 1f60A 338 :FNATVIVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=75441 # 1ylhA.476.455 read from T0547.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0547)I481 (1ylhA)T441 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (1ylhA)N444 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIWD 1ylhA 436 :AYLVN T0547 482 :TC 1ylhA 442 :GW Number of specific fragments extracted= 2 number of extra gaps= 2 total=75443 # 2msbA.476.48 read from T0547.t04.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)D480 (2msbA)I159 because E (beta_S) conformation "forbidden" or filtered. T0547 476 :ASIW 2msbA 155 :AFLG T0547 481 :ITCD 2msbA 160 :TDEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75445 # 1j8rA.477.37 read from T0547.t04.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)D480 (1j8rA)W41 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 1j8rA 38 :TVT T0547 481 :ITCDS 1j8rA 42 :NQCNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=75447 # 1dmhA.477.151 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)D484 (1dmhA)N159 because P (beta_P) conformation "forbidden" or filtered. T0547 477 :SIWDITC 1dmhA 152 :KVEIWHA T0547 485 :S 1dmhA 160 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=75449 # 1hl9A.477.320 read from T0547.t04.many.frag # found chain 1hl9A in template set T0547 477 :SIWDITCDS 1hl9A 321 :LLLNVGPKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=75450 # 2biqA.477.138 read from T0547.t04.many.frag # found chain 2biqA in template set T0547 477 :SIWDITCDS 2biqA 232 :IHYNYMCYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=75451 # 1vkdA.477.294 read from T0547.t04.many.frag # found chain 1vkdA in template set T0547 477 :SIWDITCDS 1vkdA 283 :FPCAALCDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=75452 # 1xszA.477.275 read from T0547.t04.many.frag # found chain 1xszA in training set T0547 477 :SIWDITCDS 1xszA 274 :TIQVYTPNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=75453 # 2bjfA.477.276 read from T0547.t04.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)D480 (2bjfA)S280 because E (beta_S) conformation "forbidden" or filtered. T0547 477 :SIW 2bjfA 277 :QYT T0547 481 :ITCDS 2bjfA 281 :CMCLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=75455 # 1mfmA.477.82 read from T0547.t04.many.frag # found chain 1mfmA in training set T0547 477 :SIWDITCDS 1mfmA 83 :DLGNVTADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75456 # 1y08A.477.248 read from T0547.t04.many.frag # found chain 1y08A in template set T0547 477 :SIWDITCDS 1y08A 265 :NLWGADFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=75457 # 1kt6A.477.40 read from T0547.t04.many.frag # found chain 1kt6A in training set T0547 477 :SIWDITCDS 1kt6A 41 :IVAEFSVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75458 # 1z8kA.477.24 read from T0547.t04.many.frag # found chain 1z8kA in template set T0547 477 :SIWDITCDS 1z8kA 25 :SVYEINELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=75459 # 1b65A.477.290 read from T0547.t04.many.frag # found chain 1b65A in template set Warning: unaligning (T0547)S485 (1b65A)N299 because L (left) conformation "forbidden" or filtered. T0547 477 :SIWDITCD 1b65A 291 :IFIAFSTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=75460 # 1dzkA.477.16 read from T0547.t04.many.frag # found chain 1dzkA in training set T0547 477 :SIWDITCDS 1dzkA 17 :ITSYIGSSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=75461 # 1azo.477.123 read from T0547.t04.many.frag # found chain 1azo in training set Warning: unaligning (T0547)D480 (1azo)P124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (1azo)E128 because P (beta_P) conformation "forbidden" or filtered. T0547 477 :SIW 1azo 121 :LWI T0547 481 :ITC 1azo 125 :VEG T0547 485 :S 1azo 129 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=75464 # 1a8d.477.168 read from T0547.t04.many.frag # found chain 1a8d in training set T0547 477 :SIWDITCDS 1a8d 169 :VFITITNDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=75465 # 3pviA.477.67 read from T0547.t04.many.frag # found chain 3pviA in training set T0547 477 :SIWDITCDS 3pviA 68 :ELKSINIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75466 # 1m6eX.477.205 read from T0547.t04.many.frag # found chain 1m6eX in template set Warning: unaligning (T0547)T482 (1m6eX)G211 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIWDI 1m6eX 206 :VLTIL T0547 483 :CDS 1m6eX 212 :RRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=75468 # 1sr4C.477.63 read from T0547.t04.many.frag # found chain 1sr4C in template set Warning: unaligning (T0547)S485 (1sr4C)G92 because T (delta_L) conformation "forbidden" or filtered. T0547 477 :SIWDITCD 1sr4C 84 :TLVQFKVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=75469 # 2cygA.477.232 read from T0547.t04.many.frag # found chain 2cygA in training set Warning: unaligning (T0547)W479 (2cygA)S263 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (2cygA)P268 because P (beta_P) conformation "forbidden" or filtered. T0547 477 :SI 2cygA 261 :VV T0547 480 :DITC 2cygA 264 :ESGW T0547 485 :S 2cygA 269 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=75472 # 1yqyA.477.241 read from T0547.t04.many.frag # found chain 1yqyA in template set T0547 477 :SIWDITCDS 1yqyA 499 :LKWRIQLSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=75473 # 1f60A.477.338 read from T0547.t04.many.frag # found chain 1f60A in training set T0547 477 :SIWDITCDS 1f60A 339 :NATVIVLNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=75474 # 1pq7A.477.118 read from T0547.t04.many.frag # found chain 1pq7A in training set T0547 477 :SIWDITCDS 1pq7A 134 :TVAGWGATS Number of specific fragments extracted= 1 number of extra gaps= 0 total=75475 # 2b4wA.477.264 read from T0547.t04.many.frag # found chain 2b4wA in template set Warning: unaligning (T0547)D480 (2b4wA)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 2b4wA 265 :FAS T0547 481 :ITCDS 2b4wA 269 :IVMRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=75477 # 1oygA.477.398 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)C483 (1oygA)T431 because S (epsilon) conformation "forbidden" or filtered. T0547 477 :SIWDIT 1oygA 425 :VITSYM T0547 484 :DS 1oygA 432 :NR Number of specific fragments extracted= 2 number of extra gaps= 1 total=75479 # 2a13A.477.77 read from T0547.t04.many.frag # found chain 2a13A in training set Warning: unaligning (T0547)S477 (2a13A)E78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (2a13A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :I 2a13A 79 :S T0547 480 :DITCDS 2a13A 81 :YFRPRP Number of specific fragments extracted= 2 number of extra gaps= 2 total=75481 # 1utcA.477.151 read from T0547.t04.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)D480 (1utcA)N155 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 1utcA 152 :QII T0547 481 :ITCDS 1utcA 156 :YRTDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=75483 # 1ds1A.477.216 read from T0547.t04.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)T482 (1ds1A)Y222 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)C483 (1ds1A)G223 because S (epsilon) conformation "forbidden" or filtered. T0547 477 :SIWDI 1ds1A 217 :QVKPL T0547 484 :DS 1ds1A 224 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=75485 # 2arcA.477.85 read from T0547.t04.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)D480 (2arcA)W95 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (2arcA)R99 because E (beta_S) conformation "forbidden" or filtered. T0547 477 :SIW 2arcA 92 :YHQ T0547 481 :ITC 2arcA 96 :VYF T0547 485 :S 2arcA 100 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=75488 # 1p3dA.477.340 read from T0547.t04.many.frag # found chain 1p3dA in training set T0547 477 :SIWDITCDS 1p3dA 341 :RLVDDYGHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=75489 # 1nlqA.477.32 read from T0547.t04.many.frag # found chain 1nlqA in training set T0547 477 :SIWDITCDS 1nlqA 33 :VIKQILLGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=75490 # 1dmhA.478.152 read from T0547.t04.many.frag # found chain 1dmhA in training set T0547 478 :IWDITCDSD 1dmhA 153 :VEIWHANTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75491 # 1j8rA.478.38 read from T0547.t04.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)D480 (1j8rA)W41 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)C483 (1j8rA)C44 because E (beta_S) conformation "forbidden" or filtered. T0547 478 :IW 1j8rA 39 :VT T0547 481 :IT 1j8rA 42 :NQ T0547 484 :DSD 1j8rA 45 :NGP Number of specific fragments extracted= 3 number of extra gaps= 2 total=75494 # 1hl9A.478.321 read from T0547.t04.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)T482 (1hl9A)G326 because D (zeta) conformation "forbidden" or filtered. T0547 478 :IWDI 1hl9A 322 :LLNV T0547 483 :CDSD 1hl9A 327 :PKGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=75496 # 1vkdA.478.295 read from T0547.t04.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)W479 (1vkdA)C285 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1vkdA)A286 because E (beta_S) conformation "forbidden" or filtered. T0547 478 :I 1vkdA 284 :P T0547 481 :ITCDSD 1vkdA 287 :ALCDAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=75498 # 1kt6A.478.41 read from T0547.t04.many.frag # found chain 1kt6A in training set T0547 478 :IWDITCDSD 1kt6A 42 :VAEFSVDEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=75499 # 2bjfA.478.277 read from T0547.t04.many.frag # found chain 2bjfA in training set T0547 478 :IWDITCDSD 2bjfA 278 :YTSCMCLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75500 # 2biqA.478.139 read from T0547.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)D480 (2biqA)N235 because E (beta_S) conformation "forbidden" or filtered. T0547 478 :IW 2biqA 233 :HY T0547 481 :ITCDSD 2biqA 236 :YMCYSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=75502 # 1b65A.478.291 read from T0547.t04.many.frag # found chain 1b65A in template set Warning: unaligning (T0547)S485 (1b65A)N299 because L (left) conformation "forbidden" or filtered. T0547 478 :IWDITCD 1b65A 292 :FIAFSTA T0547 486 :D 1b65A 300 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=75504 # 1a8d.478.169 read from T0547.t04.many.frag # found chain 1a8d in training set T0547 478 :IWDITCDSD 1a8d 170 :FITITNDRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75505 # 2b4wA.478.265 read from T0547.t04.many.frag # found chain 2b4wA in template set Warning: unaligning (T0547)D480 (2b4wA)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IW 2b4wA 266 :AS T0547 481 :ITCDSD 2b4wA 269 :IVMRSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=75507 # 1y08A.478.249 read from T0547.t04.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)D480 (1y08A)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IW 1y08A 266 :LW T0547 481 :ITCDSD 1y08A 269 :ADFDSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=75509 # 1dzkA.478.17 read from T0547.t04.many.frag # found chain 1dzkA in training set T0547 478 :IWDITCDSD 1dzkA 18 :TSYIGSSDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75510 # 1mfmA.478.83 read from T0547.t04.many.frag # found chain 1mfmA in training set Warning: unaligning (T0547)I478 (1mfmA)L84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1mfmA)G85 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1mfmA)N86 because E (beta_S) conformation "forbidden" or filtered. T0547 481 :ITCDSD 1mfmA 87 :VTADKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=75511 # 1azo.478.124 read from T0547.t04.many.frag # found chain 1azo in training set T0547 478 :IWDITCDSD 1azo 122 :WIPVEGEAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=75512 # 1w0pA.478.405 read from T0547.t04.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)D480 (1w0pA)T408 because E (beta_S) conformation "forbidden" or filtered. T0547 478 :IW 1w0pA 406 :VV T0547 481 :ITCDSD 1w0pA 409 :LSIDES Number of specific fragments extracted= 2 number of extra gaps= 1 total=75514 # 1rp0A.478.181 read from T0547.t04.many.frag # found chain 1rp0A in training set Warning: unaligning (T0547)S485 (1rp0A)H189 because G (3-10) conformation "forbidden" or filtered. T0547 478 :IWDITCD 1rp0A 182 :IVVSSCG T0547 486 :D 1rp0A 190 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=75516 # 1utcA.478.152 read from T0547.t04.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)D480 (1utcA)N155 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IW 1utcA 153 :II T0547 481 :ITCDSD 1utcA 156 :YRTDAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=75518 # 1f60A.478.339 read from T0547.t04.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)W479 (1f60A)T341 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S485 (1f60A)H347 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :I 1f60A 340 :A T0547 480 :DITCD 1f60A 342 :VIVLN T0547 486 :D 1f60A 348 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=75521 # 1yqyA.478.242 read from T0547.t04.many.frag # found chain 1yqyA in template set T0547 478 :IWDITCDSD 1yqyA 500 :KWRIQLSPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=75522 # 1z8kA.478.25 read from T0547.t04.many.frag # found chain 1z8kA in template set Warning: unaligning (T0547)D484 (1z8kA)L32 because T (delta_L) conformation "forbidden" or filtered. T0547 478 :IWDITC 1z8kA 26 :VYEINE T0547 485 :SD 1z8kA 33 :DR Number of specific fragments extracted= 2 number of extra gaps= 1 total=75524 # 1jm1A.478.118 read from T0547.t04.many.frag # found chain 1jm1A in training set Warning: unaligning (T0547)I478 (1jm1A)G165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1jm1A)A166 because L (left) conformation "forbidden" or filtered. T0547 480 :DITCDSD 1jm1A 167 :DLHCPCH Number of specific fragments extracted= 1 number of extra gaps= 1 total=75525 # 2a13A.478.78 read from T0547.t04.many.frag # found chain 2a13A in training set Warning: unaligning (T0547)W479 (2a13A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :I 2a13A 79 :S T0547 480 :DITCDSD 2a13A 81 :YFRPRPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=75527 # 1i4uA.478.36 read from T0547.t04.many.frag # found chain 1i4uA in training set Warning: unaligning (T0547)D480 (1i4uA)A39 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IW 1i4uA 37 :QF T0547 481 :ITCDSD 1i4uA 40 :LTNNPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=75529 # 2ae0X.478.272 read from T0547.t04.many.frag # found chain 2ae0X in template set T0547 478 :IWDITCDSD 2ae0X 273 :AEVPLLDNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=75530 # 1xksA.478.164 read from T0547.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)D480 (1xksA)R231 because P (beta_P) conformation "forbidden" or filtered. T0547 478 :IW 1xksA 229 :LI T0547 481 :ITCDSD 1xksA 232 :LIPESS Number of specific fragments extracted= 2 number of extra gaps= 1 total=75532 # 3pviA.478.68 read from T0547.t04.many.frag # found chain 3pviA in training set Warning: unaligning (T0547)D486 (3pviA)T77 because E (beta_S) conformation "forbidden" or filtered. T0547 478 :IWDITCDS 3pviA 69 :LKSINIDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=75533 # 1sr4C.478.64 read from T0547.t04.many.frag # found chain 1sr4C in template set Warning: unaligning (T0547)W479 (1sr4C)V86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1sr4C)Q87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S485 (1sr4C)G92 because T (delta_L) conformation "forbidden" or filtered. T0547 478 :I 1sr4C 85 :L T0547 481 :ITCD 1sr4C 88 :FKVV T0547 486 :D 1sr4C 93 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=75536 # 2arcA.478.86 read from T0547.t04.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)D480 (2arcA)W95 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IW 2arcA 93 :HQ T0547 481 :ITCDSD 2arcA 96 :VYFRPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=75538 # 2a9dA.478.272 read from T0547.t04.many.frag # found chain 2a9dA in training set Warning: unaligning (T0547)D486 (2a9dA)G375 because L (left) conformation "forbidden" or filtered. T0547 478 :IWDITCDS 2a9dA 367 :VKGYAWSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=75539 # 2cygA.478.233 read from T0547.t04.many.frag # found chain 2cygA in training set Warning: unaligning (T0547)D484 (2cygA)P268 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (2cygA)A270 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IWDITC 2cygA 262 :VSESGW T0547 485 :S 2cygA 269 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=75541 # 1dmhA.479.153 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)D480 (1dmhA)I155 because E (beta_S) conformation "forbidden" or filtered. T0547 479 :W 1dmhA 154 :E T0547 481 :ITCDSDG 1dmhA 156 :WHANTKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=75543 # 1hl9A.479.322 read from T0547.t04.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)D484 (1hl9A)K328 because P (beta_P) conformation "forbidden" or filtered. T0547 479 :WDITC 1hl9A 323 :LNVGP T0547 485 :SDG 1hl9A 329 :GDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=75545 # 1xksA.479.165 read from T0547.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)D484 (1xksA)E235 because P (beta_P) conformation "forbidden" or filtered. T0547 479 :WDITC 1xksA 230 :IRLIP T0547 485 :SDG 1xksA 236 :SSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=75547 # 1vkdA.479.296 read from T0547.t04.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)W479 (1vkdA)C285 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)C483 (1vkdA)C289 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G487 (1vkdA)T293 because G (3-10) conformation "forbidden" or filtered. T0547 480 :DIT 1vkdA 286 :AAL T0547 484 :DSD 1vkdA 290 :DAD Number of specific fragments extracted= 2 number of extra gaps= 3 total=75549 # 2b4wA.479.266 read from T0547.t04.many.frag # found chain 2b4wA in template set Warning: unaligning (T0547)D480 (2b4wA)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 479 :W 2b4wA 267 :S T0547 481 :ITCDSDG 2b4wA 269 :IVMRSDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=75551 # 1a8d.479.170 read from T0547.t04.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)G487 (1a8d)S179 because Y (epsilon') conformation "forbidden" or filtered. T0547 479 :WDITCDSD 1a8d 171 :ITITNDRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=75552 # 1kt6A.479.42 read from T0547.t04.many.frag # found chain 1kt6A in training set T0547 479 :WDITCDSDG 1kt6A 43 :AEFSVDENG Number of specific fragments extracted= 1 number of extra gaps= 0 total=75553 # 1jm1A.479.119 read from T0547.t04.many.frag # found chain 1jm1A in training set Warning: unaligning (T0547)W479 (1jm1A)A166 because L (left) conformation "forbidden" or filtered. T0547 480 :DITCDSDG 1jm1A 167 :DLHCPCHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=75554 # 1w0pA.479.406 read from T0547.t04.many.frag # found chain 1w0pA in training set T0547 479 :WDITCDSDG 1w0pA 407 :VTLSIDESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=75555 # 1j8rA.479.39 read from T0547.t04.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)C483 (1j8rA)C44 because E (beta_S) conformation "forbidden" or filtered. T0547 479 :WDIT 1j8rA 40 :TWNQ T0547 484 :DSDG 1j8rA 45 :NGPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=75557 # 1mfmA.479.84 read from T0547.t04.many.frag # found chain 1mfmA in training set Warning: unaligning (T0547)W479 (1mfmA)G85 because S (epsilon) conformation "forbidden" or filtered. T0547 480 :DITCDSDG 1mfmA 86 :NVTADKDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=75558 # 2bjfA.479.278 read from T0547.t04.many.frag # found chain 2bjfA in training set T0547 479 :WDITCDSDG 2bjfA 279 :TSCMCLEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=75559 # 2ae0X.479.273 read from T0547.t04.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)D480 (2ae0X)V275 because P (beta_P) conformation "forbidden" or filtered. T0547 479 :W 2ae0X 274 :E T0547 481 :ITCDSDG 2ae0X 276 :PLLDNNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=75561 # 1y08A.479.250 read from T0547.t04.many.frag # found chain 1y08A in template set T0547 479 :WDITCDSDG 1y08A 267 :WGADFDSNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=75562 # 1b65A.479.292 read from T0547.t04.many.frag # found chain 1b65A in template set Warning: unaligning (T0547)S485 (1b65A)N299 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G487 (1b65A)R301 because Y (epsilon') conformation "forbidden" or filtered. T0547 479 :WDITCD 1b65A 293 :IAFSTA T0547 486 :D 1b65A 300 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=75564 # 2a13A.479.79 read from T0547.t04.many.frag # found chain 2a13A in training set Warning: unaligning (T0547)W479 (2a13A)G80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2a13A)Y81 because E (beta_S) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 2a13A 82 :FRPRPDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=75565 # 1dzkA.479.18 read from T0547.t04.many.frag # found chain 1dzkA in training set T0547 479 :WDITCDSDG 1dzkA 19 :SYIGSSDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75566 # 1utcA.479.153 read from T0547.t04.many.frag # found chain 1utcA in template set T0547 479 :WDITCDSDG 1utcA 154 :INYRTDAKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=75567 # 1oygA.479.138 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)W479 (1oygA)G165 because Y (epsilon') conformation "forbidden" or filtered. T0547 480 :DITCDSDG 1oygA 166 :SATFTSDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=75568 # 1rp0A.479.182 read from T0547.t04.many.frag # found chain 1rp0A in training set Warning: unaligning (T0547)D480 (1rp0A)V184 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)C483 (1rp0A)C187 because G (3-10) conformation "forbidden" or filtered. T0547 479 :W 1rp0A 183 :V T0547 481 :IT 1rp0A 185 :SS T0547 484 :DSDG 1rp0A 188 :GHDG Number of specific fragments extracted= 3 number of extra gaps= 2 total=75571 # 1azo.479.125 read from T0547.t04.many.frag # found chain 1azo in training set Warning: unaligning (T0547)G487 (1azo)I131 because E (beta_S) conformation "forbidden" or filtered. T0547 479 :WDITCDSD 1azo 123 :IPVEGEAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=75572 # 1f60A.479.340 read from T0547.t04.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)D480 (1f60A)V342 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (1f60A)N346 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (1f60A)P348 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G487 (1f60A)G349 because Y (epsilon') conformation "forbidden" or filtered. T0547 479 :W 1f60A 341 :T T0547 481 :ITC 1f60A 343 :IVL T0547 485 :S 1f60A 347 :H Number of specific fragments extracted= 3 number of extra gaps= 3 total=75575 # 2a9dA.479.273 read from T0547.t04.many.frag # found chain 2a9dA in training set Warning: unaligning (T0547)D480 (2a9dA)G369 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (2a9dA)S373 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (2a9dA)G375 because L (left) conformation "forbidden" or filtered. T0547 479 :W 2a9dA 368 :K T0547 481 :ITC 2a9dA 370 :YAW T0547 485 :S 2a9dA 374 :G T0547 487 :G 2a9dA 376 :G Number of specific fragments extracted= 4 number of extra gaps= 3 total=75579 # 1xe7A.479.111 read from T0547.t04.many.frag # found chain 1xe7A in training set T0547 479 :WDITCDSDG 1xe7A 112 :QYVLVYPDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=75580 # 1i4uA.479.37 read from T0547.t04.many.frag # found chain 1i4uA in training set T0547 479 :WDITCDSDG 1i4uA 38 :FALTNNPYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=75581 # 1vlyA.479.70 read from T0547.t04.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)D480 (1vlyA)A60 because P (beta_P) conformation "forbidden" or filtered. T0547 479 :W 1vlyA 59 :L T0547 481 :ITCDSDG 1vlyA 61 :AHCDAKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=75583 # 1yqyA.479.243 read from T0547.t04.many.frag # found chain 1yqyA in template set Warning: unaligning (T0547)D480 (1yqyA)R502 because E (beta_S) conformation "forbidden" or filtered. T0547 479 :W 1yqyA 501 :W T0547 481 :ITCDSDG 1yqyA 503 :IQLSPDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=75585 1x3zA expands to /projects/compbio/data/pdb/1x3z.pdb.gz 1x3zA:# 1x3zA.479.153 read from T0547.t04.many.frag # adding 1x3zA to template set # found chain 1x3zA in template set T0547 479 :WDITCDSDG 1x3zA 161 :EIYKCNRCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=75586 # 2biqA.479.140 read from T0547.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)G487 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2biqA)G245 T0547 479 :WDITCDSD 2biqA 234 :YNYMCYSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=75587 # 1sr4C.479.65 read from T0547.t04.many.frag # found chain 1sr4C in template set Warning: unaligning (T0547)W479 (1sr4C)V86 because Y (epsilon') conformation "forbidden" or filtered. T0547 480 :DITCDSDG 1sr4C 87 :QFKVVGAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=75588 # 2b4wA.480.267 read from T0547.t04.many.frag # found chain 2b4wA in template set T0547 480 :DITCDSDGE 2b4wA 268 :GIVMRSDGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75589 # 1hl9A.480.323 read from T0547.t04.many.frag # found chain 1hl9A in template set T0547 480 :DITCDSDGE 1hl9A 324 :NVGPKGDGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=75590 # 1xksA.480.166 read from T0547.t04.many.frag # found chain 1xksA in template set T0547 480 :DITCDSDGE 1xksA 231 :RLIPESSGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75591 # 1vkdA.480.297 read from T0547.t04.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)E488 (1vkdA)G294 because T (delta_L) conformation "forbidden" or filtered. T0547 480 :DITCDSDG 1vkdA 286 :AALCDADT Number of specific fragments extracted= 1 number of extra gaps= 1 total=75592 # 1a8d.480.171 read from T0547.t04.many.frag # found chain 1a8d in training set T0547 480 :DITCDSDGE 1a8d 172 :TITNDRLSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=75593 # 1dmhA.480.154 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)D480 (1dmhA)I155 because E (beta_S) conformation "forbidden" or filtered. T0547 481 :ITCDSDGE 1dmhA 156 :WHANTKGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=75594 # 1xe7A.480.112 read from T0547.t04.many.frag # found chain 1xe7A in training set T0547 480 :DITCDSDGE 1xe7A 113 :YVLVYPDGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=75595 # 1jm1A.480.120 read from T0547.t04.many.frag # found chain 1jm1A in training set T0547 480 :DITCDSDGE 1jm1A 167 :DLHCPCHGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=75596 # 1mfmA.480.85 read from T0547.t04.many.frag # found chain 1mfmA in training set Warning: unaligning (T0547)D480 (1mfmA)N86 because E (beta_S) conformation "forbidden" or filtered. T0547 481 :ITCDSDGE 1mfmA 87 :VTADKDGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=75597 # 2a13A.480.80 read from T0547.t04.many.frag # found chain 2a13A in training set Warning: unaligning (T0547)D480 (2a13A)Y81 because E (beta_S) conformation "forbidden" or filtered. T0547 481 :ITCDSDGE 2a13A 82 :FRPRPDGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=75598 # 1oygA.480.139 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)D480 (1oygA)S166 because Y (epsilon') conformation "forbidden" or filtered. T0547 481 :ITCDSDGE 1oygA 167 :ATFTSDGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=75599 # 1kt6A.480.43 read from T0547.t04.many.frag # found chain 1kt6A in training set Warning: unaligning (T0547)E488 (1kt6A)H52 because P (beta_P) conformation "forbidden" or filtered. T0547 480 :DITCDSDG 1kt6A 44 :EFSVDENG Number of specific fragments extracted= 1 number of extra gaps= 1 total=75600 # 1w0pA.480.407 read from T0547.t04.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)T482 (1w0pA)S410 because Y (epsilon') conformation "forbidden" or filtered. T0547 480 :DI 1w0pA 408 :TL T0547 483 :CDSDGE 1w0pA 411 :IDESGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=75602 # 1iicA.480.280 read from T0547.t04.many.frag # found chain 1iicA in template set T0547 480 :DITCDSDGE 1iicA 314 :YVVEQPDGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75603 # 2bjfA.480.279 read from T0547.t04.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)E488 (2bjfA)I288 because E (beta_S) conformation "forbidden" or filtered. T0547 480 :DITCDSDG 2bjfA 280 :SCMCLEKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=75604 # 1y08A.480.251 read from T0547.t04.many.frag # found chain 1y08A in template set T0547 480 :DITCDSDGE 1y08A 268 :GADFDSNGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=75605 # 1omhA.480.167 read from T0547.t04.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)D480 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1omhA)T170 Warning: unaligning (T0547)T482 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1omhA)T170 Warning: unaligning (T0547)D484 (1omhA)R172 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :C 1omhA 171 :K T0547 485 :SDGE 1omhA 173 :SDGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=75607 # 2ae0X.480.274 read from T0547.t04.many.frag # found chain 2ae0X in template set T0547 480 :DITCDSDGE 2ae0X 275 :VPLLDNNGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75608 # 1rp0A.480.183 read from T0547.t04.many.frag # found chain 1rp0A in training set Warning: unaligning (T0547)C483 (1rp0A)C187 because G (3-10) conformation "forbidden" or filtered. T0547 480 :DIT 1rp0A 184 :VSS T0547 484 :DSDGE 1rp0A 188 :GHDGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=75610 # 1o7jA.480.274 read from T0547.t04.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)S485 (1o7jA)G280 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (1o7jA)N281 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1o7jA)I283 because P (beta_P) conformation "forbidden" or filtered. T0547 480 :DITCD 1o7jA 275 :RSTRT T0547 487 :G 1o7jA 282 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=75612 # 1utcA.480.154 read from T0547.t04.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)D480 (1utcA)N155 because Y (epsilon') conformation "forbidden" or filtered. T0547 481 :ITCDSDGE 1utcA 156 :YRTDAKQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=75613 # 1j8rA.480.40 read from T0547.t04.many.frag # found chain 1j8rA in training set Warning: unaligning (T0547)D480 (1j8rA)W41 because Y (epsilon') conformation "forbidden" or filtered. T0547 481 :ITCDSDGE 1j8rA 42 :NQCNGPEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=75614 # 1b65A.480.293 read from T0547.t04.many.frag # found chain 1b65A in template set Warning: unaligning (T0547)G487 (1b65A)R301 because Y (epsilon') conformation "forbidden" or filtered. T0547 480 :DITCDSD 1b65A 294 :AFSTANQ T0547 488 :E 1b65A 302 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=75616 # 1mswD.480.416 read from T0547.t04.many.frag # found chain 1mswD in template set T0547 480 :DITCDSDGE 1mswD 417 :PYNMDWRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=75617 # 1vlyA.480.71 read from T0547.t04.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)C483 (1vlyA)C63 because E (beta_S) conformation "forbidden" or filtered. T0547 480 :DIT 1vlyA 60 :AAH T0547 484 :DSDGE 1vlyA 64 :DAKGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=75619 # 2msbA.480.52 read from T0547.t04.many.frag # found chain 2msbA in training set T0547 480 :DITCDSDGE 2msbA 159 :ITDEVTEGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=75620 # 2bduA.480.190 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 480 :DITCDSDGE 2bduA 191 :FMDFDENGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=75621 # 1yqyA.480.244 read from T0547.t04.many.frag # found chain 1yqyA in template set Warning: unaligning (T0547)D484 (1yqyA)S506 because P (beta_P) conformation "forbidden" or filtered. T0547 480 :DITC 1yqyA 502 :RIQL T0547 485 :SDGE 1yqyA 507 :PDTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=75623 # 1rg8A.480.27 read from T0547.t04.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)D480 (1rg8A)F22 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :ITCDSDGE 1rg8A 23 :LRILPDGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=75624 # 1lm8V.480.32 read from T0547.t04.many.frag # found chain 1lm8V in template set T0547 480 :DITCDSDGE 1lm8V 86 :PVWLNFDGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75625 # 1xksA.481.167 read from T0547.t04.many.frag # found chain 1xksA in template set T0547 481 :ITCDSDGEI 1xksA 232 :LIPESSGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=75626 # 1hl9A.481.324 read from T0547.t04.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)E488 (1hl9A)T332 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 1hl9A 325 :VGPKGDG T0547 489 :I 1hl9A 333 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=75628 # 1oygA.481.140 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)D484 (1oygA)T170 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :ITC 1oygA 167 :ATF T0547 485 :SDGEI 1oygA 171 :SDGKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=75630 # 1xe7A.481.113 read from T0547.t04.many.frag # found chain 1xe7A in training set Warning: unaligning (T0547)E488 (1xe7A)Q121 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 1xe7A 114 :VLVYPDG T0547 489 :I 1xe7A 122 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=75632 # 2b4wA.481.268 read from T0547.t04.many.frag # found chain 2b4wA in template set T0547 481 :ITCDSDGEI 2b4wA 269 :IVMRSDGKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=75633 # 1omhA.481.168 read from T0547.t04.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)T482 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1omhA)T170 T0547 483 :CDSDGEI 1omhA 171 :KRSDGQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=75634 # 1a8d.481.172 read from T0547.t04.many.frag # found chain 1a8d in training set T0547 481 :ITCDSDGEI 1a8d 173 :ITNDRLSSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=75635 # 2a13A.481.81 read from T0547.t04.many.frag # found chain 2a13A in training set Warning: unaligning (T0547)T482 (2a13A)R83 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (2a13A)R85 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (2a13A)S89 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :I 2a13A 82 :F T0547 483 :C 2a13A 84 :P T0547 485 :SDG 2a13A 86 :PDG T0547 489 :I 2a13A 90 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=75639 # 1mswD.481.417 read from T0547.t04.many.frag # found chain 1mswD in template set T0547 481 :ITCDSDGEI 1mswD 418 :YNMDWRGRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=75640 # 1mfmA.481.86 read from T0547.t04.many.frag # found chain 1mfmA in training set Warning: unaligning (T0547)E488 (1mfmA)V94 because E (beta_S) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 1mfmA 87 :VTADKDG T0547 489 :I 1mfmA 95 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=75642 # 2bduA.481.191 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 481 :ITCDSDGEI 2bduA 192 :MDFDENGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75643 # 1jm1A.481.121 read from T0547.t04.many.frag # found chain 1jm1A in training set T0547 481 :ITCDSDGEI 1jm1A 168 :LHCPCHGSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=75644 # 1o7jA.481.275 read from T0547.t04.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)D486 (1o7jA)N281 because Y (epsilon') conformation "forbidden" or filtered. T0547 481 :ITCDS 1o7jA 276 :STRTG T0547 487 :GEI 1o7jA 282 :GIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75646 # 2msbA.481.53 read from T0547.t04.many.frag # found chain 2msbA in training set T0547 481 :ITCDSDGEI 2msbA 160 :TDEVTEGQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=75647 # 1iicA.481.281 read from T0547.t04.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)E488 (1iicA)K322 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 1iicA 315 :VVEQPDG T0547 489 :I 1iicA 323 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=75649 # 1w0pA.481.408 read from T0547.t04.many.frag # found chain 1w0pA in training set T0547 481 :ITCDSDGEI 1w0pA 409 :LSIDESGGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75650 # 2ae0X.481.275 read from T0547.t04.many.frag # found chain 2ae0X in template set T0547 481 :ITCDSDGEI 2ae0X 276 :PLLDNNGKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=75651 # 1y08A.481.252 read from T0547.t04.many.frag # found chain 1y08A in template set T0547 481 :ITCDSDGEI 1y08A 269 :ADFDSNGNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75652 # 1dmhA.481.155 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)D484 (1dmhA)N159 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :ITC 1dmhA 156 :WHA T0547 485 :SDGEI 1dmhA 160 :TKGFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=75654 # 1lm8V.481.33 read from T0547.t04.many.frag # found chain 1lm8V in template set T0547 481 :ITCDSDGEI 1lm8V 87 :VWLNFDGEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=75655 # 1rp0A.481.184 read from T0547.t04.many.frag # found chain 1rp0A in training set Warning: unaligning (T0547)D484 (1rp0A)G188 because S (epsilon) conformation "forbidden" or filtered. T0547 481 :ITC 1rp0A 185 :SSC T0547 485 :SDGEI 1rp0A 189 :HDGPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=75657 # 1rg8A.481.28 read from T0547.t04.many.frag # found chain 1rg8A in training set T0547 481 :ITCDSDGEI 1rg8A 23 :LRILPDGTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=75658 # 1vkdA.481.298 read from T0547.t04.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)E488 (1vkdA)G294 because T (delta_L) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 1vkdA 287 :ALCDADT T0547 489 :I 1vkdA 295 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=75660 # 1r5mA.481.303 read from T0547.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0547)C483 (1r5mA)C418 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (1r5mA)S419 because Y (epsilon') conformation "forbidden" or filtered. T0547 481 :IT 1r5mA 416 :IS T0547 485 :SDGEI 1r5mA 420 :MDGSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75662 # 1kt6A.481.44 read from T0547.t04.many.frag # found chain 1kt6A in training set T0547 481 :ITCDSDGEI 1kt6A 45 :FSVDENGHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=75663 # 1w6gA.481.324 read from T0547.t04.many.frag # found chain 1w6gA in training set T0547 481 :ITCDSDGEI 1w6gA 327 :VISDAFGNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=75664 # 1w0pA.481.122 read from T0547.t04.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)E488 (1w0pA)N130 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 1w0pA 123 :ISLDSSG T0547 489 :I 1w0pA 131 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=75666 # 1utcA.481.155 read from T0547.t04.many.frag # found chain 1utcA in template set T0547 481 :ITCDSDGEI 1utcA 156 :YRTDAKQKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=75667 # 2bjfA.481.280 read from T0547.t04.many.frag # found chain 2bjfA in training set T0547 481 :ITCDSDGEI 2bjfA 281 :CMCLEKGIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=75668 # 1cqyA.481.66 read from T0547.t04.many.frag # found chain 1cqyA in template set T0547 481 :ITCDSDGEI 1cqyA 484 :FIKSKDGTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=75669 # 1xksA.482.168 read from T0547.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)S490 (1xksA)H241 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TCDSDGEI 1xksA 233 :IPESSGKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=75670 # 1omhA.482.169 read from T0547.t04.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)T482 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1omhA)T170 Warning: unaligning (T0547)S490 (1omhA)R178 because Y (epsilon') conformation "forbidden" or filtered. T0547 483 :CDSDGEI 1omhA 171 :KRSDGQW Number of specific fragments extracted= 1 number of extra gaps= 1 total=75671 # 1xe7A.482.114 read from T0547.t04.many.frag # found chain 1xe7A in training set T0547 482 :TCDSDGEIS 1xe7A 115 :LVYPDGQVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75672 # 1mswD.482.418 read from T0547.t04.many.frag # found chain 1mswD in template set T0547 482 :TCDSDGEIS 1mswD 419 :NMDWRGRVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=75673 # 2bduA.482.192 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 482 :TCDSDGEIS 2bduA 193 :DFDENGVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75674 # 1hl9A.482.325 read from T0547.t04.many.frag # found chain 1hl9A in template set T0547 482 :TCDSDGEIS 1hl9A 326 :GPKGDGTIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=75675 # 2b4wA.482.269 read from T0547.t04.many.frag # found chain 2b4wA in template set Warning: unaligning (T0547)D484 (2b4wA)R272 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (2b4wA)K276 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TC 2b4wA 270 :VM T0547 485 :SDG 2b4wA 273 :SDG T0547 489 :IS 2b4wA 277 :VD Number of specific fragments extracted= 3 number of extra gaps= 2 total=75678 # 2msbA.482.54 read from T0547.t04.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)E488 (2msbA)Q167 because D (zeta) conformation "forbidden" or filtered. T0547 482 :TCDSDG 2msbA 161 :DEVTEG T0547 489 :IS 2msbA 168 :FM Number of specific fragments extracted= 2 number of extra gaps= 1 total=75680 # 1oygA.482.141 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)D484 (1oygA)T170 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TC 1oygA 168 :TF T0547 485 :SDGEIS 1oygA 171 :SDGKIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=75682 # 1o7jA.482.276 read from T0547.t04.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)D486 (1o7jA)N281 because Y (epsilon') conformation "forbidden" or filtered. T0547 482 :TCDS 1o7jA 277 :TRTG T0547 487 :GEIS 1o7jA 282 :GIVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=75684 # 2a13A.482.82 read from T0547.t04.many.frag # found chain 2a13A in training set T0547 482 :TCDSDGEIS 2a13A 83 :RPRPDGSIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75685 # 1iicA.482.282 read from T0547.t04.many.frag # found chain 1iicA in template set T0547 482 :TCDSDGEIS 1iicA 316 :VEQPDGKIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=75686 # 1mfmA.482.87 read from T0547.t04.many.frag # found chain 1mfmA in training set Warning: unaligning (T0547)S490 (1mfmA)D96 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TCDSDGEI 1mfmA 88 :TADKDGVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=75687 # 1y08A.482.253 read from T0547.t04.many.frag # found chain 1y08A in template set T0547 482 :TCDSDGEIS 1y08A 270 :DFDSNGNLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75688 # 1lm8V.482.34 read from T0547.t04.many.frag # found chain 1lm8V in template set T0547 482 :TCDSDGEIS 1lm8V 88 :WLNFDGEPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=75689 # 1a8d.482.173 read from T0547.t04.many.frag # found chain 1a8d in training set T0547 482 :TCDSDGEIS 1a8d 174 :TNDRLSSAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=75690 # 1jm1A.482.122 read from T0547.t04.many.frag # found chain 1jm1A in training set T0547 482 :TCDSDGEIS 1jm1A 169 :HCPCHGSIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=75691 # 2ae0X.482.276 read from T0547.t04.many.frag # found chain 2ae0X in template set T0547 482 :TCDSDGEIS 2ae0X 277 :LLDNNGKFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=75692 # 1rg8A.482.29 read from T0547.t04.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)D32 because Y (epsilon') conformation "forbidden" or filtered. T0547 482 :TCDSDGEI 1rg8A 24 :RILPDGTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=75693 # 1cqyA.482.67 read from T0547.t04.many.frag # found chain 1cqyA in template set T0547 482 :TCDSDGEIS 1cqyA 485 :IKSKDGTVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75694 # 1w0pA.482.409 read from T0547.t04.many.frag # found chain 1w0pA in training set T0547 482 :TCDSDGEIS 1w0pA 410 :SIDESGGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=75695 # 1pg6A.482.85 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)S485 (1pg6A)G82 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G487 (1pg6A)G84 because E (beta_S) conformation "forbidden" or filtered. T0547 482 :TCD 1pg6A 79 :MSN T0547 486 :D 1pg6A 83 :D T0547 488 :EIS 1pg6A 85 :KLA Number of specific fragments extracted= 3 number of extra gaps= 2 total=75698 # 1acc.482.645 read from T0547.t04.many.frag # found chain 1acc in template set T0547 482 :TCDSDGEIS 1acc 646 :IEDTEGLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75699 # 1r5mA.482.304 read from T0547.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0547)D484 (1r5mA)S419 because Y (epsilon') conformation "forbidden" or filtered. T0547 482 :TC 1r5mA 417 :SC T0547 485 :SDGEIS 1r5mA 420 :MDGSVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=75701 # 1dmhA.482.156 read from T0547.t04.many.frag # found chain 1dmhA in training set T0547 482 :TCDSDGEIS 1dmhA 157 :HANTKGFYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=75702 # 1x3zA.482.156 read from T0547.t04.many.frag # found chain 1x3zA in template set Warning: unaligning (T0547)E488 (1x3zA)N170 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TCDSDG 1x3zA 164 :KCNRCG T0547 489 :IS 1x3zA 171 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=75704 # 2a8kA.482.75 read from T0547.t04.many.frag # found chain 2a8kA in template set T0547 482 :TCDSDGEIS 2a8kA 76 :VNDRTGEVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=75705 # 1w6gA.482.325 read from T0547.t04.many.frag # found chain 1w6gA in training set T0547 482 :TCDSDGEIS 1w6gA 328 :ISDAFGNPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=75706 # 1h7sA.482.135 read from T0547.t04.many.frag # found chain 1h7sA in template set T0547 482 :TCDSDGEIS 1h7sA 136 :MFDHNGKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=75707 # 1qopB.482.285 read from T0547.t04.many.frag # found chain 1qopB in training set T0547 482 :TCDSDGEIS 1qopB 287 :MQTADGQIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75708 # 1xksA.483.169 read from T0547.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)E488 (1xksA)K239 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1xksA)H241 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :CDSDG 1xksA 234 :PESSG T0547 489 :I 1xksA 240 :I T0547 491 :Y 1xksA 242 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=75711 # 2msbA.483.55 read from T0547.t04.many.frag # found chain 2msbA in training set T0547 483 :CDSDGEISY 2msbA 162 :EVTEGQFMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=75712 # 2bduA.483.193 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 483 :CDSDGEISY 2bduA 194 :FDENGVLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=75713 # 1xe7A.483.115 read from T0547.t04.many.frag # found chain 1xe7A in training set T0547 483 :CDSDGEISY 1xe7A 116 :VYPDGQVKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=75714 # 2b4wA.483.270 read from T0547.t04.many.frag # found chain 2b4wA in template set T0547 483 :CDSDGEISY 2b4wA 271 :MRSDGKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75715 # 1omhA.483.170 read from T0547.t04.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)D484 (1omhA)R172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1omhA)R178 because Y (epsilon') conformation "forbidden" or filtered. T0547 483 :C 1omhA 171 :K T0547 485 :SDGEI 1omhA 173 :SDGQW T0547 491 :Y 1omhA 179 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=75718 # 1mswD.483.419 read from T0547.t04.many.frag # found chain 1mswD in template set T0547 483 :CDSDGEISY 1mswD 420 :MDWRGRVYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=75719 # 1iicA.483.283 read from T0547.t04.many.frag # found chain 1iicA in template set T0547 483 :CDSDGEISY 1iicA 317 :EQPDGKITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=75720 # 1oygA.483.142 read from T0547.t04.many.frag # found chain 1oygA in training set T0547 483 :CDSDGEISY 1oygA 169 :FTSDGKIRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75721 # 2a13A.483.83 read from T0547.t04.many.frag # found chain 2a13A in training set Warning: unaligning (T0547)D484 (2a13A)R85 because E (beta_S) conformation "forbidden" or filtered. T0547 483 :C 2a13A 84 :P T0547 485 :SDGEISY 2a13A 86 :PDGSIEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75723 # 1o7jA.483.277 read from T0547.t04.many.frag # found chain 1o7jA in training set T0547 483 :CDSDGEISY 1o7jA 278 :RTGNGIVPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=75724 # 1y08A.483.254 read from T0547.t04.many.frag # found chain 1y08A in template set T0547 483 :CDSDGEISY 1y08A 271 :FDSNGNLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=75725 # 1hl9A.483.326 read from T0547.t04.many.frag # found chain 1hl9A in template set Warning: unaligning (T0547)S490 (1hl9A)P334 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :CDSDGEI 1hl9A 327 :PKGDGTI T0547 491 :Y 1hl9A 335 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=75727 # 1lm8V.483.35 read from T0547.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)D484 (1lm8V)N90 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :C 1lm8V 89 :L T0547 485 :SDGEISY 1lm8V 91 :FDGEPQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=75729 # 1rg8A.483.30 read from T0547.t04.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)E488 (1rg8A)T30 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :CDSDG 1rg8A 25 :ILPDG T0547 489 :ISY 1rg8A 31 :VDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=75731 # 1pg6A.483.86 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)D484 (1pg6A)N81 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S485 (1pg6A)G82 because S (epsilon) conformation "forbidden" or filtered. T0547 483 :C 1pg6A 80 :S T0547 486 :DGEISY 1pg6A 83 :DGKLAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=75733 # 1mfmA.483.88 read from T0547.t04.many.frag # found chain 1mfmA in training set T0547 483 :CDSDGEISY 1mfmA 89 :ADKDGVADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=75734 # 2ae0X.483.277 read from T0547.t04.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)Y491 (2ae0X)G286 because T (delta_L) conformation "forbidden" or filtered. T0547 483 :CDSDGEIS 2ae0X 278 :LDNNGKFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=75735 # 1w4sA.483.132 read from T0547.t04.many.frag # found chain 1w4sA in training set T0547 483 :CDSDGEISY 1w4sA 1062 :SAKTKSFKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75736 # 2czrA.483.193 read from T0547.t04.many.frag # found chain 2czrA in template set T0547 483 :CDSDGEISY 2czrA 186 :NFREGKVFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=75737 # 1cqyA.483.68 read from T0547.t04.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)E488 (1cqyA)T491 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y491 (1cqyA)S494 because Y (epsilon') conformation "forbidden" or filtered. T0547 483 :CDSDG 1cqyA 486 :KSKDG T0547 489 :IS 1cqyA 492 :VK Number of specific fragments extracted= 2 number of extra gaps= 2 total=75739 # 1jm1A.483.123 read from T0547.t04.many.frag # found chain 1jm1A in training set T0547 483 :CDSDGEISY 1jm1A 170 :CPCHGSIYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=75740 # 1h7sA.483.136 read from T0547.t04.many.frag # found chain 1h7sA in template set T0547 483 :CDSDGEISY 1h7sA 137 :FDHNGKIIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=75741 # 2f01A.483.20 read from T0547.t04.many.frag # found chain 2f01A in training set Warning: unaligning (T0547)Y491 (2f01A)G41 because Y (epsilon') conformation "forbidden" or filtered. T0547 483 :CDSDGEIS 2f01A 33 :AGADGALT Number of specific fragments extracted= 1 number of extra gaps= 1 total=75742 # 1a8d.483.174 read from T0547.t04.many.frag # found chain 1a8d in training set T0547 483 :CDSDGEISY 1a8d 175 :NDRLSSANL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75743 # 1w0pA.483.410 read from T0547.t04.many.frag # found chain 1w0pA in training set T0547 483 :CDSDGEISY 1w0pA 411 :IDESGGLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=75744 # 1x3zA.483.157 read from T0547.t04.many.frag # found chain 1x3zA in template set Warning: unaligning (T0547)E488 (1x3zA)N170 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :CDSDG 1x3zA 165 :CNRCG T0547 489 :ISY 1x3zA 171 :ITR Number of specific fragments extracted= 2 number of extra gaps= 1 total=75746 # 1acc.483.646 read from T0547.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0547)S490 (1acc)E654 because D (zeta) conformation "forbidden" or filtered. T0547 483 :CDSDGEI 1acc 647 :EDTEGLK T0547 491 :Y 1acc 655 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=75748 # 1unqA.483.30 read from T0547.t04.many.frag # found chain 1unqA in training set Warning: unaligning (T0547)D484 (1unqA)K30 because E (beta_S) conformation "forbidden" or filtered. T0547 483 :C 1unqA 29 :L T0547 485 :SDGEISY 1unqA 31 :NDGTFIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=75750 # 1qopB.483.286 read from T0547.t04.many.frag # found chain 1qopB in training set Warning: unaligning (T0547)D484 (1qopB)T289 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :C 1qopB 288 :Q T0547 485 :SDGEISY 1qopB 290 :ADGQIEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=75752 # 2bduA.484.194 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 484 :DSDGEISYS 2bduA 195 :DENGVLKGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=75753 # 2msbA.484.56 read from T0547.t04.many.frag # found chain 2msbA in training set T0547 484 :DSDGEISYS 2msbA 163 :VTEGQFMYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=75754 # 1iicA.484.284 read from T0547.t04.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)D484 (1iicA)Q318 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1iicA)K322 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDG 1iicA 319 :PDG T0547 489 :ISYS 1iicA 323 :ITDF Number of specific fragments extracted= 2 number of extra gaps= 2 total=75756 # 1xksA.484.170 read from T0547.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)D484 (1xksA)E235 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S492 (1xksA)H243 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEISY 1xksA 236 :SSGKIHQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=75757 # 1xe7A.484.116 read from T0547.t04.many.frag # found chain 1xe7A in training set T0547 484 :DSDGEISYS 1xe7A 117 :YPDGQVKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=75758 # 1mswD.484.420 read from T0547.t04.many.frag # found chain 1mswD in template set T0547 484 :DSDGEISYS 1mswD 421 :DWRGRVYAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=75759 # 2b4wA.484.271 read from T0547.t04.many.frag # found chain 2b4wA in template set Warning: unaligning (T0547)D484 (2b4wA)R272 because E (beta_S) conformation "forbidden" or filtered. T0547 485 :SDGEISYS 2b4wA 273 :SDGKVDLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=75760 # 1omhA.484.171 read from T0547.t04.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)S490 (1omhA)R178 because Y (epsilon') conformation "forbidden" or filtered. T0547 484 :DSDGEI 1omhA 172 :RSDGQW T0547 491 :YS 1omhA 179 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=75762 # 1oygA.484.143 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)S490 (1oygA)R176 because D (zeta) conformation "forbidden" or filtered. T0547 484 :DSDGEI 1oygA 170 :TSDGKI T0547 491 :YS 1oygA 177 :LF Number of specific fragments extracted= 2 number of extra gaps= 1 total=75764 # 2czrA.484.194 read from T0547.t04.many.frag # found chain 2czrA in template set T0547 484 :DSDGEISYS 2czrA 187 :FREGKVFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75765 # 1y08A.484.255 read from T0547.t04.many.frag # found chain 1y08A in template set T0547 484 :DSDGEISYS 1y08A 272 :DSNGNLKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=75766 # 1o7jA.484.278 read from T0547.t04.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)D486 (1o7jA)N281 because Y (epsilon') conformation "forbidden" or filtered. T0547 484 :DS 1o7jA 279 :TG T0547 487 :GEISYS 1o7jA 282 :GIVPPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=75768 # 2a13A.484.84 read from T0547.t04.many.frag # found chain 2a13A in training set T0547 484 :DSDGEISYS 2a13A 85 :RPDGSIEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=75769 # 1w4sA.484.133 read from T0547.t04.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)S492 (1w4sA)I1071 because P (beta_P) conformation "forbidden" or filtered. T0547 484 :DSDGEISY 1w4sA 1063 :AKTKSFKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=75770 # 1rg8A.484.31 read from T0547.t04.many.frag # found chain 1rg8A in training set T0547 484 :DSDGEISYS 1rg8A 26 :LPDGTVDGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=75771 # 1lm8V.484.36 read from T0547.t04.many.frag # found chain 1lm8V in template set T0547 484 :DSDGEISYS 1lm8V 90 :NFDGEPQPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=75772 # 1pg6A.484.87 read from T0547.t04.many.frag # found chain 1pg6A in training set T0547 484 :DSDGEISYS 1pg6A 81 :NGDGKLALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=75773 # 1cqyA.484.69 read from T0547.t04.many.frag # found chain 1cqyA in template set T0547 484 :DSDGEISYS 1cqyA 487 :SKDGTVKSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=75774 # 2ae0X.484.278 read from T0547.t04.many.frag # found chain 2ae0X in template set T0547 484 :DSDGEISYS 2ae0X 279 :DNNGKFNGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=75775 # 1hl9A.484.327 read from T0547.t04.many.frag # found chain 1hl9A in template set T0547 484 :DSDGEISYS 1hl9A 328 :KGDGTIPDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75776 # 1h7sA.484.137 read from T0547.t04.many.frag # found chain 1h7sA in template set T0547 484 :DSDGEISYS 1h7sA 138 :DHNGKIIQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75777 # 1unqA.484.31 read from T0547.t04.many.frag # found chain 1unqA in training set T0547 484 :DSDGEISYS 1unqA 30 :KNDGTFIGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=75778 # 1acc.484.647 read from T0547.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0547)E488 (1acc)L652 because P (beta_P) conformation "forbidden" or filtered. T0547 484 :DSDG 1acc 648 :DTEG T0547 489 :ISYS 1acc 653 :KEVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=75780 # 1x3zA.484.158 read from T0547.t04.many.frag # found chain 1x3zA in template set T0547 484 :DSDGEISYS 1x3zA 166 :NRCGNITRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=75781 # 2a8kA.484.77 read from T0547.t04.many.frag # found chain 2a8kA in template set T0547 484 :DSDGEISYS 2a8kA 78 :DRTGEVTQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=75782 1hufA expands to /projects/compbio/data/pdb/1huf.pdb.gz 1hufA:# 1hufA.484.30 read from T0547.t04.many.frag # adding 1hufA to template set # found chain 1hufA in template set T0547 484 :DSDGEISYS 1hufA 26 :KLRGNVAAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=75783 # 2f01A.484.21 read from T0547.t04.many.frag # found chain 2f01A in training set Warning: unaligning (T0547)D484 (2f01A)G34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y491 (2f01A)G41 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEIS 2f01A 35 :ADGALT T0547 492 :S 2f01A 42 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=75785 # 1t61A.484.176 read from T0547.t04.many.frag # found chain 1t61A in training set Warning: unaligning (T0547)D484 (1t61A)H177 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1t61A)N183 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEI 1t61A 178 :GRGTC T0547 491 :YS 1t61A 184 :YY Number of specific fragments extracted= 2 number of extra gaps= 2 total=75787 # 1qopB.484.287 read from T0547.t04.many.frag # found chain 1qopB in training set Warning: unaligning (T0547)D484 (1qopB)T289 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDGEISYS 1qopB 290 :ADGQIEES Number of specific fragments extracted= 1 number of extra gaps= 1 total=75788 # 1jm1A.484.124 read from T0547.t04.many.frag # found chain 1jm1A in training set T0547 484 :DSDGEISYS 1jm1A 171 :PCHGSIYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75789 # 2bduA.485.195 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 485 :SDGEISYSK 2bduA 196 :ENGVLKGFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75790 # 2msbA.485.57 read from T0547.t04.many.frag # found chain 2msbA in training set T0547 485 :SDGEISYSK 2msbA 164 :TEGQFMYVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=75791 # 1mswD.485.421 read from T0547.t04.many.frag # found chain 1mswD in template set T0547 485 :SDGEISYSK 1mswD 422 :WRGRVYAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=75792 # 1o7jA.485.279 read from T0547.t04.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)S485 (1o7jA)G280 because T (delta_L) conformation "forbidden" or filtered. T0547 486 :DGEISYSK 1o7jA 281 :NGIVPPDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=75793 # 1xksA.485.171 read from T0547.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)S490 (1xksA)H241 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDGEI 1xksA 236 :SSGKI T0547 491 :YSK 1xksA 242 :QHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=75795 # 2czrA.485.195 read from T0547.t04.many.frag # found chain 2czrA in template set T0547 485 :SDGEISYSK 2czrA 188 :REGKVFDKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=75796 # 1xe7A.485.117 read from T0547.t04.many.frag # found chain 1xe7A in training set Warning: unaligning (T0547)E488 (1xe7A)Q121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1xe7A)K126 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDG 1xe7A 118 :PDG T0547 489 :ISYS 1xe7A 122 :VKSF Number of specific fragments extracted= 2 number of extra gaps= 2 total=75798 # 1iicA.485.285 read from T0547.t04.many.frag # found chain 1iicA in template set T0547 485 :SDGEISYSK 1iicA 319 :PDGKITDFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=75799 # 1cqyA.485.70 read from T0547.t04.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)Y491 (1cqyA)S494 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEIS 1cqyA 488 :KDGTVK T0547 492 :SK 1cqyA 495 :WQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=75801 # 1w4sA.485.134 read from T0547.t04.many.frag # found chain 1w4sA in training set T0547 485 :SDGEISYSK 1w4sA 1064 :KTKSFKKIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75802 # 2b4wA.485.272 read from T0547.t04.many.frag # found chain 2b4wA in template set Warning: unaligning (T0547)E488 (2b4wA)K276 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDG 2b4wA 273 :SDG T0547 489 :ISYSK 2b4wA 277 :VDLYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=75804 # 1hufA.485.31 read from T0547.t04.many.frag # found chain 1hufA in template set Warning: unaligning (T0547)E488 (1hufA)N30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hufA)E36 T0547 485 :SDG 1hufA 27 :LRG T0547 489 :ISYS 1hufA 31 :VAAN Number of specific fragments extracted= 2 number of extra gaps= 2 total=75806 # 1y08A.485.256 read from T0547.t04.many.frag # found chain 1y08A in template set T0547 485 :SDGEISYSK 1y08A 273 :SNGNLKAIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=75807 # 1pg6A.485.88 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)K493 (1pg6A)P90 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDGEISYS 1pg6A 82 :GDGKLALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=75808 # 1ka9H.485.103 read from T0547.t04.many.frag # found chain 1ka9H in template set T0547 485 :SDGEISYSK 1ka9H 104 :VPGEVRRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=75809 # 1omhA.485.172 read from T0547.t04.many.frag # found chain 1omhA in template set T0547 485 :SDGEISYSK 1omhA 173 :SDGQWRALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75810 # 1oygA.485.144 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)K493 (1oygA)Y179 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEISYS 1oygA 171 :SDGKIRLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=75811 # 1unqA.485.32 read from T0547.t04.many.frag # found chain 1unqA in training set T0547 485 :SDGEISYSK 1unqA 31 :NDGTFIGYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75812 # 1lm8V.485.37 read from T0547.t04.many.frag # found chain 1lm8V in template set T0547 485 :SDGEISYSK 1lm8V 91 :FDGEPQPYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=75813 # 2a8kA.485.78 read from T0547.t04.many.frag # found chain 2a8kA in template set Warning: unaligning (T0547)E488 (2a8kA)E82 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDG 2a8kA 79 :RTG T0547 489 :ISYSK 2a8kA 83 :VTQIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=75815 # 1rg8A.485.32 read from T0547.t04.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)D32 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEI 1rg8A 27 :PDGTV T0547 491 :YSK 1rg8A 33 :GTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=75817 # 1iow.485.149 read from T0547.t04.many.frag # found chain 1iow in template set Warning: unaligning (T0547)G487 (1iow)V152 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SD 1iow 150 :SS T0547 488 :EISYSK 1iow 153 :GMSKVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75819 # 2ae0X.485.279 read from T0547.t04.many.frag # found chain 2ae0X in template set T0547 485 :SDGEISYSK 2ae0X 280 :NNGKFNGQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=75820 # 1h7sA.485.138 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)E488 (1h7sA)K142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1h7sA)T147 because E (beta_S) conformation "forbidden" or filtered. T0547 485 :SDG 1h7sA 139 :HNG T0547 489 :ISYS 1h7sA 143 :IIQK Number of specific fragments extracted= 2 number of extra gaps= 2 total=75822 # 1ccwB.485.423 read from T0547.t04.many.frag # found chain 1ccwB in training set T0547 485 :SDGEISYSK 1ccwB 424 :NLGCVRYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75823 # 1qopB.485.288 read from T0547.t04.many.frag # found chain 1qopB in training set T0547 485 :SDGEISYSK 1qopB 290 :ADGQIEESY Number of specific fragments extracted= 1 number of extra gaps= 0 total=75824 # 1t61A.485.177 read from T0547.t04.many.frag # found chain 1t61A in training set Warning: unaligning (T0547)S490 (1t61A)N183 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEI 1t61A 178 :GRGTC T0547 491 :YSK 1t61A 184 :YYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=75826 # 1br9.485.170 read from T0547.t04.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)S485 because of BadResidue code BAD_PEPTIDE in next template residue (1br9)D172 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE at template residue (1br9)D172 T0547 487 :GEISYSK 1br9 173 :GSCAWYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=75827 # 1yqyA.485.249 read from T0547.t04.many.frag # found chain 1yqyA in template set T0547 485 :SDGEISYSK 1yqyA 507 :PDTRAGYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75828 # 1acc.485.648 read from T0547.t04.many.frag # found chain 1acc in template set T0547 485 :SDGEISYSK 1acc 649 :TEGLKEVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=75829 # 2bduA.486.196 read from T0547.t04.many.frag # found chain 2bduA in template set T0547 486 :DGEISYSKD 2bduA 197 :NGVLKGFKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=75830 # 2msbA.486.58 read from T0547.t04.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)D494 (2msbA)G173 because S (epsilon) conformation "forbidden" or filtered. T0547 486 :DGEISYSK 2msbA 165 :EGQFMYVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=75831 # 2czrA.486.196 read from T0547.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)D494 (2czrA)G197 because T (delta_L) conformation "forbidden" or filtered. T0547 486 :DGEISYSK 2czrA 189 :EGKVFDKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=75832 # 1o7jA.486.280 read from T0547.t04.many.frag # found chain 1o7jA in training set T0547 486 :DGEISYSKD 1o7jA 281 :NGIVPPDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75833 # 1ka9H.486.104 read from T0547.t04.many.frag # found chain 1ka9H in template set Warning: unaligning (T0547)E488 (1ka9H)E107 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1ka9H)A113 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :DG 1ka9H 105 :PG T0547 489 :ISYSK 1ka9H 108 :VRRFR Number of specific fragments extracted= 2 number of extra gaps= 2 total=75835 # 1w4sA.486.135 read from T0547.t04.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)D494 (1w4sA)L1073 because E (beta_S) conformation "forbidden" or filtered. T0547 486 :DGEISYSK 1w4sA 1065 :TKSFKKIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=75836 # 1cqyA.486.71 read from T0547.t04.many.frag # found chain 1cqyA in template set T0547 486 :DGEISYSKD 1cqyA 489 :DGTVKSWQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=75837 # 1hufA.486.32 read from T0547.t04.many.frag # found chain 1hufA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hufA)E36 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hufA)E36 T0547 486 :DGEISYS 1hufA 28 :RGNVAAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=75838 # 1xksA.486.172 read from T0547.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)S492 (1xksA)H243 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1xksA)I244 because P (beta_P) conformation "forbidden" or filtered. T0547 486 :DGEISY 1xksA 237 :SGKIHQ T0547 494 :D 1xksA 245 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=75840 # 1mswD.486.422 read from T0547.t04.many.frag # found chain 1mswD in template set T0547 486 :DGEISYSKD 1mswD 423 :RGRVYAVSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=75841 # 1unqA.486.33 read from T0547.t04.many.frag # found chain 1unqA in training set Warning: unaligning (T0547)D494 (1unqA)E40 because E (beta_S) conformation "forbidden" or filtered. T0547 486 :DGEISYSK 1unqA 32 :DGTFIGYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=75842 # 1pg6A.486.89 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)E488 (1pg6A)K85 because E (beta_S) conformation "forbidden" or filtered. T0547 486 :DG 1pg6A 83 :DG T0547 489 :ISYSKD 1pg6A 86 :LALAPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=75844 # 1iow.486.150 read from T0547.t04.many.frag # found chain 1iow in template set Warning: unaligning (T0547)K493 (1iow)V158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1iow)A159 because S (epsilon) conformation "forbidden" or filtered. T0547 486 :DGEISYS 1iow 151 :SVGMSKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=75845 # 1rg8A.486.33 read from T0547.t04.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)D32 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :DGEI 1rg8A 28 :DGTV T0547 491 :YSKD 1rg8A 33 :GTRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=75847 # 1xe7A.486.118 read from T0547.t04.many.frag # found chain 1xe7A in training set Warning: unaligning (T0547)E488 (1xe7A)Q121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1xe7A)K126 because P (beta_P) conformation "forbidden" or filtered. T0547 486 :DG 1xe7A 119 :DG T0547 489 :ISYS 1xe7A 122 :VKSF T0547 494 :D 1xe7A 127 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=75850 # 2a8kA.486.79 read from T0547.t04.many.frag # found chain 2a8kA in template set T0547 486 :DGEISYSKD 2a8kA 80 :TGEVTQISD Number of specific fragments extracted= 1 number of extra gaps= 0 total=75851 # 1iicA.486.286 read from T0547.t04.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)E488 (1iicA)K322 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1iicA)T324 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1iicA)F327 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1iicA)S328 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :DG 1iicA 320 :DG T0547 489 :I 1iicA 323 :I T0547 491 :YS 1iicA 325 :DF Number of specific fragments extracted= 3 number of extra gaps= 3 total=75854 # 1ew0A.486.34 read from T0547.t04.many.frag # found chain 1ew0A in training set T0547 486 :DGEISYSKD 1ew0A 156 :DGTIVSFNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=75855 # 1c4rA.486.111 read from T0547.t04.many.frag # found chain 1c4rA in template set T0547 486 :DGEISYSKD 1c4rA 192 :WPVIERYPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=75856 # 1qopB.486.289 read from T0547.t04.many.frag # found chain 1qopB in training set Warning: unaligning (T0547)K493 (1qopB)Y298 because E (beta_S) conformation "forbidden" or filtered. T0547 486 :DGEISYS 1qopB 291 :DGQIEES T0547 494 :D 1qopB 299 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=75858 # 1y08A.486.257 read from T0547.t04.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)K493 (1y08A)Y281 because E (beta_S) conformation "forbidden" or filtered. T0547 486 :DGEISYS 1y08A 274 :NGNLKAI T0547 494 :D 1y08A 282 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=75860 # 1u00A.486.13 read from T0547.t04.many.frag # found chain 1u00A in template set Warning: unaligning (T0547)D486 (1u00A)G402 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1u00A)L404 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1u00A)P410 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :G 1u00A 403 :G T0547 489 :ISYSK 1u00A 405 :VEKVI Number of specific fragments extracted= 2 number of extra gaps= 3 total=75862 # 1lm8V.486.38 read from T0547.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)K493 (1lm8V)P99 because P (beta_P) conformation "forbidden" or filtered. T0547 486 :DGEISYS 1lm8V 92 :DGEPQPY T0547 494 :D 1lm8V 100 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=75864 # 1xipA.486.115 read from T0547.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)E488 (1xipA)E117 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1xipA)T122 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :DG 1xipA 115 :LS T0547 489 :ISYS 1xipA 118 :FRTV T0547 494 :D 1xipA 123 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=75867 2ak4D expands to /projects/compbio/data/pdb/2ak4.pdb.gz 2ak4D:# 2ak4D.486.147 read from T0547.t04.many.frag # adding 2ak4D to template set # found chain 2ak4D in template set Warning: unaligning (T0547)G487 (2ak4D)T148 because P (beta_P) conformation "forbidden" or filtered. T0547 486 :D 2ak4D 147 :Q T0547 488 :EISYSKD 2ak4D 149 :NVSQSKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=75869 # 1suuA.486.122 read from T0547.t04.many.frag # found chain 1suuA in training set T0547 486 :DGEISYSKD 1suuA 621 :SGKIARFES Number of specific fragments extracted= 1 number of extra gaps= 0 total=75870 # 1t61A.486.178 read from T0547.t04.many.frag # found chain 1t61A in training set Warning: unaligning (T0547)E488 (1t61A)T181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1t61A)N183 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :DG 1t61A 179 :RG T0547 489 :I 1t61A 182 :C T0547 491 :YSKD 1t61A 184 :YYAN Number of specific fragments extracted= 3 number of extra gaps= 2 total=75873 # 1dmlA.486.206 read from T0547.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)S492 (1dmlA)F213 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1dmlA)T214 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :DGEISY 1dmlA 207 :NGKFSV T0547 494 :D 1dmlA 215 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=75875 # 2ae0X.486.280 read from T0547.t04.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)S490 (2ae0X)N285 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y491 (2ae0X)G286 because T (delta_L) conformation "forbidden" or filtered. T0547 486 :DGEI 2ae0X 281 :NGKF T0547 492 :SKD 2ae0X 287 :QYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=75877 1yueA expands to /projects/compbio/data/pdb/1yue.pdb.gz 1yueA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1yueA.486.284 read from T0547.t04.many.frag # adding 1yueA to template set # found chain 1yueA in template set Warning: unaligning (T0547)S492 (1yueA)K291 because L (left) conformation "forbidden" or filtered. T0547 486 :DGEISY 1yueA 285 :SGWLKH T0547 493 :KD 1yueA 292 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=75879 # 2msbA.487.59 read from T0547.t04.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)D494 (2msbA)G173 because S (epsilon) conformation "forbidden" or filtered. T0547 487 :GEISYSK 2msbA 166 :GQFMYVT T0547 495 :K 2msbA 174 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=75881 # 2bduA.487.197 read from T0547.t04.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)K493 (2bduA)K204 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (2bduA)G205 because S (epsilon) conformation "forbidden" or filtered. T0547 487 :GEISYS 2bduA 198 :GVLKGF T0547 495 :K 2bduA 206 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=75883 # 2czrA.487.197 read from T0547.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)K495 (2czrA)G198 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :GEISYSKD 2czrA 190 :GKVFDKFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=75884 # 1w4sA.487.136 read from T0547.t04.many.frag # found chain 1w4sA in training set T0547 487 :GEISYSKDK 1w4sA 1066 :KSFKKIKLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=75885 # 1ka9H.487.105 read from T0547.t04.many.frag # found chain 1ka9H in template set Warning: unaligning (T0547)D494 (1ka9H)A113 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :GEISYSK 1ka9H 106 :GEVRRFR T0547 495 :K 1ka9H 114 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=75887 # 1hufA.487.33 read from T0547.t04.many.frag # found chain 1hufA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hufA)E36 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hufA)E36 T0547 487 :GEISYS 1hufA 29 :GNVAAN T0547 495 :K 1hufA 37 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=75889 # 1o7jA.487.281 read from T0547.t04.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)S490 (1o7jA)P285 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :GEI 1o7jA 282 :GIV T0547 491 :YSKDK 1o7jA 286 :PDEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=75891 # 1cqyA.487.72 read from T0547.t04.many.frag # found chain 1cqyA in template set T0547 487 :GEISYSKDK 1cqyA 490 :GTVKSWQTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=75892 # 1unqA.487.34 read from T0547.t04.many.frag # found chain 1unqA in training set Warning: unaligning (T0547)D494 (1unqA)E40 because E (beta_S) conformation "forbidden" or filtered. T0547 487 :GEISYSK 1unqA 33 :GTFIGYK T0547 495 :K 1unqA 41 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=75894 # 1pg6A.487.90 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)K493 (1pg6A)P90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1pg6A)T92 because E (beta_S) conformation "forbidden" or filtered. T0547 487 :GEISYS 1pg6A 84 :GKLALA T0547 494 :D 1pg6A 91 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=75896 # 1iow.487.151 read from T0547.t04.many.frag # found chain 1iow in template set Warning: unaligning (T0547)G487 (1iow)V152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1iow)G153 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1iow)A159 because S (epsilon) conformation "forbidden" or filtered. T0547 489 :ISYSK 1iow 154 :MSKVV T0547 495 :K 1iow 160 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=75898 # 1mswD.487.423 read from T0547.t04.many.frag # found chain 1mswD in template set T0547 487 :GEISYSKDK 1mswD 424 :GRVYAVSMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=75899 # 1xksA.487.173 read from T0547.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)S492 (1xksA)H243 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :GEISY 1xksA 238 :GKIHQ T0547 493 :KDK 1xksA 244 :ILP Number of specific fragments extracted= 2 number of extra gaps= 1 total=75901 # 1c4rA.487.112 read from T0547.t04.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)G487 (1c4rA)P193 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1c4rA)V194 because P (beta_P) conformation "forbidden" or filtered. T0547 489 :ISYSKDK 1c4rA 195 :IERYPAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=75902 # 1rg8A.487.34 read from T0547.t04.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)D32 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :GEI 1rg8A 29 :GTV T0547 491 :YSKDK 1rg8A 33 :GTRDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=75904 # 2ak4D.487.148 read from T0547.t04.many.frag # found chain 2ak4D in template set T0547 487 :GEISYSKDK 2ak4D 148 :TNVSQSKDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=75905 # 1yqyA.487.251 read from T0547.t04.many.frag # found chain 1yqyA in template set Warning: unaligning (T0547)G487 (1yqyA)T509 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1yqyA)N516 because L (left) conformation "forbidden" or filtered. T0547 488 :EISYSK 1yqyA 510 :RAGYLE T0547 495 :K 1yqyA 517 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=75907 # 1dmlA.487.207 read from T0547.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)S492 (1dmlA)F213 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1dmlA)T214 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :GEISY 1dmlA 208 :GKFSV T0547 494 :DK 1dmlA 215 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=75909 # 1y4wA.487.141 read from T0547.t04.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)E488 (1y4wA)T162 because E (beta_S) conformation "forbidden" or filtered. T0547 487 :G 1y4wA 161 :L T0547 489 :ISYSKDK 1y4wA 163 :WTTYDAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=75911 # 1ka8A.487.9 read from T0547.t04.many.frag # found chain 1ka8A in template set T0547 487 :GEISYSKDK 1ka8A 10 :GYLETLPQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=75912 1jb0A expands to /projects/compbio/data/pdb/1jb0.pdb.gz 1jb0A:# 1jb0A.487.628 read from T0547.t04.many.frag # adding 1jb0A to template set # found chain 1jb0A in template set Warning: unaligning (T0547)D494 (1jb0A)G636 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1jb0A)G637 because L (left) conformation "forbidden" or filtered. T0547 487 :GEISYSK 1jb0A 629 :GTVSHIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=75913 1hstA expands to /projects/compbio/data/pdb/1hst.pdb.gz 1hstA:# 1hstA.487.60 read from T0547.t04.many.frag # adding 1hstA to template set # found chain 1hstA in template set Warning: unaligning (T0547)G487 because of BadResidue code BAD_PEPTIDE in next template residue (1hstA)V80 Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE at template residue (1hstA)V80 T0547 489 :ISYSKDK 1hstA 81 :LKQTKGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=75914 # 1u00A.487.14 read from T0547.t04.many.frag # found chain 1u00A in template set T0547 487 :GEISYSKDK 1u00A 403 :GLVEKVIPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=75915 # 1k8kC.487.0 read from T0547.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)E488 because first residue in template chain is (1k8kC)A2 T0547 489 :ISYSKDK 1k8kC 3 :YHSFLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=75916 # 1xodA.487.20 read from T0547.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0547)K493 (1xodA)G32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1xodA)G33 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 because of BadResidue code BAD_PEPTIDE in next template residue (1xodA)G35 T0547 487 :GEISYS 1xodA 26 :GGWLQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=75917 # 1lm8V.487.39 read from T0547.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)K493 (1lm8V)P99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1lm8V)T100 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :GEISYS 1lm8V 93 :GEPQPY T0547 495 :K 1lm8V 101 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=75919 # 2bjiA.487.232 read from T0547.t04.many.frag # found chain 2bjiA in training set Warning: unaligning (T0547)K493 (2bjiA)T1239 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (2bjiA)G1240 because T (delta_L) conformation "forbidden" or filtered. T0547 487 :GEISYS 2bjiA 1233 :GVLLDV T0547 495 :K 2bjiA 1241 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=75921 # 1t61A.487.179 read from T0547.t04.many.frag # found chain 1t61A in training set T0547 487 :GEISYSKDK 1t61A 180 :GTCNYYANA Number of specific fragments extracted= 1 number of extra gaps= 0 total=75922 # 2a8kA.487.80 read from T0547.t04.many.frag # found chain 2a8kA in template set T0547 487 :GEISYSKDK 2a8kA 81 :GEVTQISDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=75923 # 1yueA.487.285 read from T0547.t04.many.frag # found chain 1yueA in template set Warning: unaligning (T0547)S492 (1yueA)K291 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1yueA)D294 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :GEISY 1yueA 286 :GWLKH T0547 493 :KD 1yueA 292 :PE Number of specific fragments extracted= 2 number of extra gaps= 2 total=75925 # 2msbA.488.60 read from T0547.t04.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)K493 (2msbA)T172 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (2msbA)G173 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (2msbA)G174 because S (epsilon) conformation "forbidden" or filtered. T0547 488 :EISYS 2msbA 167 :QFMYV T0547 496 :P 2msbA 175 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=75927 # 2czrA.488.198 read from T0547.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)D494 (2czrA)G197 because T (delta_L) conformation "forbidden" or filtered. T0547 488 :EISYSK 2czrA 191 :KVFDKF T0547 495 :KP 2czrA 198 :GE Number of specific fragments extracted= 2 number of extra gaps= 1 total=75929 # 2bduA.488.198 read from T0547.t04.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)S490 (2bduA)K201 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y491 (2bduA)G202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (2bduA)G205 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (2bduA)E206 because E (beta_S) conformation "forbidden" or filtered. T0547 488 :EI 2bduA 199 :VL T0547 492 :SK 2bduA 203 :FK T0547 496 :P 2bduA 207 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=75932 # 1pg6A.488.91 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)I489 (1pg6A)L86 because Y (epsilon') conformation "forbidden" or filtered. T0547 488 :E 1pg6A 85 :K T0547 490 :SYSKDKP 1pg6A 87 :ALAPNTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=75934 # 1w4sA.488.137 read from T0547.t04.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)S492 (1w4sA)I1071 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1w4sA)W1074 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. T0547 488 :EISY 1w4sA 1067 :SFKK T0547 493 :KD 1w4sA 1072 :KL Number of specific fragments extracted= 2 number of extra gaps= 2 total=75936 # 1hufA.488.34 read from T0547.t04.many.frag # found chain 1hufA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hufA)E36 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hufA)E36 T0547 488 :EISYS 1hufA 30 :NVAAN T0547 495 :KP 1hufA 37 :TT Number of specific fragments extracted= 2 number of extra gaps= 1 total=75938 # 1cqyA.488.73 read from T0547.t04.many.frag # found chain 1cqyA in template set T0547 488 :EISYSKDKP 1cqyA 491 :TVKSWQTIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=75939 # 1unqA.488.35 read from T0547.t04.many.frag # found chain 1unqA in training set Warning: unaligning (T0547)E488 (1unqA)T34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1unqA)E40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1unqA)R41 because P (beta_P) conformation "forbidden" or filtered. T0547 489 :ISYSK 1unqA 35 :FIGYK T0547 496 :P 1unqA 42 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=75941 # 1ka9H.488.106 read from T0547.t04.many.frag # found chain 1ka9H in template set Warning: unaligning (T0547)E488 (1ka9H)E107 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S492 (1ka9H)F111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1ka9H)A113 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1ka9H)G114 because S (epsilon) conformation "forbidden" or filtered. T0547 489 :ISY 1ka9H 108 :VRR T0547 493 :K 1ka9H 112 :R T0547 496 :P 1ka9H 115 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=75944 # 1iow.488.152 read from T0547.t04.many.frag # found chain 1iow in template set Warning: unaligning (T0547)E488 (1iow)G153 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1iow)A159 because S (epsilon) conformation "forbidden" or filtered. T0547 489 :ISYSK 1iow 154 :MSKVV T0547 495 :KP 1iow 160 :EN Number of specific fragments extracted= 2 number of extra gaps= 2 total=75946 # 1o7jA.488.282 read from T0547.t04.many.frag # found chain 1o7jA in training set T0547 488 :EISYSKDKP 1o7jA 283 :IVPPDEELP Number of specific fragments extracted= 1 number of extra gaps= 0 total=75947 # 1c4rA.488.113 read from T0547.t04.many.frag # found chain 1c4rA in template set T0547 488 :EISYSKDKP 1c4rA 194 :VIERYPAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=75948 # 1k8kC.488.1 read from T0547.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)E488 because first residue in template chain is (1k8kC)A2 Warning: unaligning (T0547)K493 (1k8kC)L7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)I11 T0547 489 :ISYS 1k8kC 3 :YHSF T0547 494 :DK 1k8kC 8 :VE Number of specific fragments extracted= 2 number of extra gaps= 2 total=75950 # 1dmlA.488.208 read from T0547.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)S492 (1dmlA)F213 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1dmlA)T217 because E (beta_S) conformation "forbidden" or filtered. T0547 488 :EISY 1dmlA 209 :KFSV T0547 493 :KDK 1dmlA 214 :TTS Number of specific fragments extracted= 2 number of extra gaps= 2 total=75952 # 1jb0A.488.629 read from T0547.t04.many.frag # found chain 1jb0A in template set Warning: unaligning (T0547)K493 (1jb0A)T635 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1jb0A)G636 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1jb0A)G637 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1jb0A)N638 because G (3-10) conformation "forbidden" or filtered. T0547 488 :EISYS 1jb0A 630 :TVSHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=75953 # 2bjiA.488.233 read from T0547.t04.many.frag # found chain 2bjiA in training set Warning: unaligning (T0547)D494 (2bjiA)G1240 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (2bjiA)G1241 because P (beta_P) conformation "forbidden" or filtered. T0547 488 :EISYSK 2bjiA 1234 :VLLDVT T0547 496 :P 2bjiA 1242 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=75955 # 1u00A.488.15 read from T0547.t04.many.frag # found chain 1u00A in template set Warning: unaligning (T0547)P496 (1u00A)N412 because T (delta_L) conformation "forbidden" or filtered. T0547 488 :EISYSKDK 1u00A 404 :LVEKVIPR Number of specific fragments extracted= 1 number of extra gaps= 1 total=75956 # 1xodA.488.21 read from T0547.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0547)K493 (1xodA)G32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 because of BadResidue code BAD_PEPTIDE in next template residue (1xodA)G35 Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE at template residue (1xodA)G35 T0547 488 :EISYS 1xodA 27 :GWLQL T0547 494 :D 1xodA 33 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=75958 # 1qxmA.488.219 read from T0547.t04.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)K495 (1qxmA)N213 because Y (epsilon') conformation "forbidden" or filtered. T0547 488 :EISYSKD 1qxmA 206 :RYLTWIQ T0547 496 :P 1qxmA 214 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=75960 # 1ka8A.488.10 read from T0547.t04.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)P496 (1ka8A)S19 because G (3-10) conformation "forbidden" or filtered. T0547 488 :EISYSKDK 1ka8A 11 :YLETLPQT Number of specific fragments extracted= 1 number of extra gaps= 1 total=75961 # 1y4wA.488.142 read from T0547.t04.many.frag # found chain 1y4wA in training set T0547 488 :EISYSKDKP 1y4wA 162 :TWTTYDAAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=75962 # 1mswD.488.424 read from T0547.t04.many.frag # found chain 1mswD in template set Warning: unaligning (T0547)P496 (1mswD)N433 because Y (epsilon') conformation "forbidden" or filtered. T0547 488 :EISYSKDK 1mswD 425 :RVYAVSMF Number of specific fragments extracted= 1 number of extra gaps= 1 total=75963 # 2ak4D.488.149 read from T0547.t04.many.frag # found chain 2ak4D in template set Warning: unaligning (T0547)P496 (2ak4D)D157 because G (3-10) conformation "forbidden" or filtered. T0547 488 :EISYSKDK 2ak4D 149 :NVSQSKDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=75964 # 1xksA.488.174 read from T0547.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)S492 (1xksA)H243 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1xksA)L245 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1xksA)Q247 because L (left) conformation "forbidden" or filtered. T0547 488 :EISY 1xksA 239 :KIHQ T0547 493 :K 1xksA 244 :I T0547 495 :K 1xksA 246 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=75967 # 1rg8A.488.35 read from T0547.t04.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)E488 (1rg8A)T30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1rg8A)D32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1rg8A)S38 because G (3-10) conformation "forbidden" or filtered. T0547 489 :I 1rg8A 31 :V T0547 491 :YSKDK 1rg8A 33 :GTRDR Number of specific fragments extracted= 2 number of extra gaps= 3 total=75969 # 1yqyA.488.252 read from T0547.t04.many.frag # found chain 1yqyA in template set Warning: unaligning (T0547)D494 (1yqyA)N516 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1yqyA)G517 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1yqyA)K518 because E (beta_S) conformation "forbidden" or filtered. T0547 488 :EISYSK 1yqyA 510 :RAGYLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=75970 # 1b2pA.488.71 read from T0547.t04.many.frag # found chain 1b2pA in training set Warning: unaligning (T0547)S490 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1b2pA)V75 Warning: unaligning (T0547)Y491 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1b2pA)V75 Warning: unaligning (T0547)K495 (1b2pA)E79 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1b2pA)N80 because L (left) conformation "forbidden" or filtered. T0547 488 :EI 1b2pA 72 :VL T0547 492 :SKD 1b2pA 76 :ITN Number of specific fragments extracted= 2 number of extra gaps= 2 total=75972 1ttuA expands to /projects/compbio/data/pdb/1ttu.pdb.gz 1ttuA:Skipped atom 966, because occupancy 0.500 <= existing 0.500 in 1ttuA Skipped atom 2558, because occupancy 0.500 <= existing 0.500 in 1ttuA Skipped atom 2560, because occupancy 0.500 <= existing 0.500 in 1ttuA Skipped atom 2562, because occupancy 0.500 <= existing 0.500 in 1ttuA Skipped atom 2564, because occupancy 0.500 <= existing 0.500 in 1ttuA # 1ttuA.488.167 read from T0547.t04.many.frag # adding 1ttuA to template set # found chain 1ttuA in template set Warning: unaligning (T0547)S490 (1ttuA)G356 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1ttuA)S360 because P (beta_P) conformation "forbidden" or filtered. T0547 488 :EI 1ttuA 354 :EI T0547 491 :YSK 1ttuA 357 :GFV T0547 495 :KP 1ttuA 361 :QR Number of specific fragments extracted= 3 number of extra gaps= 2 total=75975 # 1ckmA.488.252 read from T0547.t04.many.frag # found chain 1ckmA in template set T0547 488 :EISYSKDKP 1ckmA 253 :TIGIFDPNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=75976 # 1hstA.488.61 read from T0547.t04.many.frag # found chain 1hstA in template set Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE at template residue (1hstA)V80 Warning: unaligning (T0547)D494 (1hstA)G86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1hstA)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 489 :ISYSK 1hstA 81 :LKQTK T0547 495 :K 1hstA 87 :V Number of specific fragments extracted= 2 number of extra gaps= 3 total=75978 # 2msbA.489.61 read from T0547.t04.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)D494 (2msbA)G173 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (2msbA)G174 because S (epsilon) conformation "forbidden" or filtered. T0547 489 :ISYSK 2msbA 168 :FMYVT T0547 496 :PL 2msbA 175 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=75980 # 2czrA.489.199 read from T0547.t04.many.frag # found chain 2czrA in template set T0547 489 :ISYSKDKPL 2czrA 192 :VFDKFGGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=75981 # 1pg6A.489.92 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)L497 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 489 :ISYSKDKP 1pg6A 86 :LALAPNTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=75982 # 1w4sA.489.138 read from T0547.t04.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)K495 (1w4sA)W1074 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. T0547 489 :ISYSKD 1w4sA 1068 :FKKIKL T0547 497 :L 1w4sA 1076 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=75984 # 1cqyA.489.74 read from T0547.t04.many.frag # found chain 1cqyA in template set T0547 489 :ISYSKDKPL 1cqyA 492 :VKSWQTIQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=75985 # 1hufA.489.35 read from T0547.t04.many.frag # found chain 1hufA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hufA)E36 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hufA)E36 T0547 489 :ISYS 1hufA 31 :VAAN T0547 495 :KPL 1hufA 37 :TTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=75987 # 1ka9H.489.107 read from T0547.t04.many.frag # found chain 1ka9H in template set Warning: unaligning (T0547)K495 (1ka9H)G114 because S (epsilon) conformation "forbidden" or filtered. T0547 489 :ISYSKD 1ka9H 108 :VRRFRA T0547 496 :PL 1ka9H 115 :RV Number of specific fragments extracted= 2 number of extra gaps= 1 total=75989 # 1k8kC.489.2 read from T0547.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)K493 (1k8kC)L7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1k8kC)E9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)I11 Warning: unaligning (T0547)L497 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)I11 T0547 489 :ISYS 1k8kC 3 :YHSF T0547 494 :D 1k8kC 8 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=75991 # 2bduA.489.199 read from T0547.t04.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)Y491 (2bduA)G202 because Y (epsilon') conformation "forbidden" or filtered. T0547 489 :IS 2bduA 200 :LK T0547 492 :SKDKPL 2bduA 203 :FKGELI Number of specific fragments extracted= 2 number of extra gaps= 1 total=75993 # 1c4rA.489.114 read from T0547.t04.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)K495 (1c4rA)G231 because P (beta_P) conformation "forbidden" or filtered. T0547 489 :ISYSKD 1c4rA 195 :IERYPA T0547 496 :PL 1c4rA 232 :RQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=75995 # 1iow.489.153 read from T0547.t04.many.frag # found chain 1iow in template set Warning: unaligning (T0547)K493 (1iow)V158 because P (beta_P) conformation "forbidden" or filtered. T0547 489 :ISYS 1iow 154 :MSKV T0547 494 :DKPL 1iow 159 :AENA Number of specific fragments extracted= 2 number of extra gaps= 1 total=75997 # 1unqA.489.36 read from T0547.t04.many.frag # found chain 1unqA in training set T0547 489 :ISYSKDKPL 1unqA 35 :FIGYKERPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=75998 # 1dmlA.489.209 read from T0547.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)S492 (1dmlA)F213 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1dmlA)T214 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1dmlA)T217 because E (beta_S) conformation "forbidden" or filtered. T0547 489 :ISY 1dmlA 210 :FSV T0547 494 :DK 1dmlA 215 :TS T0547 497 :L 1dmlA 218 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=76001 # 1acc.489.652 read from T0547.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0547)S490 (1acc)E654 because D (zeta) conformation "forbidden" or filtered. T0547 489 :I 1acc 653 :K T0547 491 :YSKDKPL 1acc 655 :VINDRYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=76003 # 2f8aA.489.184 read from T0547.t04.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)D494 (2f8aA)S178 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2f8aA)R180 because G (3-10) conformation "forbidden" or filtered. T0547 489 :ISYSK 2f8aA 173 :PLRRY T0547 495 :K 2f8aA 179 :R T0547 497 :L 2f8aA 181 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=76006 # 1jb0A.489.630 read from T0547.t04.many.frag # found chain 1jb0A in template set Warning: unaligning (T0547)K495 (1jb0A)G637 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1jb0A)N638 because G (3-10) conformation "forbidden" or filtered. T0547 489 :ISYSKD 1jb0A 631 :VSHITG T0547 497 :L 1jb0A 639 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=76008 # 1xodA.489.22 read from T0547.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0547)K493 (1xodA)G32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 because of BadResidue code BAD_PEPTIDE in next template residue (1xodA)G35 Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE at template residue (1xodA)G35 T0547 489 :ISYS 1xodA 28 :WLQL T0547 494 :D 1xodA 33 :G T0547 497 :L 1xodA 36 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=76011 # 2bjiA.489.234 read from T0547.t04.many.frag # found chain 2bjiA in training set Warning: unaligning (T0547)K495 (2bjiA)G1241 because P (beta_P) conformation "forbidden" or filtered. T0547 489 :ISYSKD 2bjiA 1235 :LLDVTG T0547 496 :PL 2bjiA 1242 :PF Number of specific fragments extracted= 2 number of extra gaps= 1 total=76013 # 1qxmA.489.220 read from T0547.t04.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)K495 (1qxmA)N213 because Y (epsilon') conformation "forbidden" or filtered. T0547 489 :ISYSKD 1qxmA 207 :YLTWIQ T0547 496 :PL 1qxmA 214 :SN Number of specific fragments extracted= 2 number of extra gaps= 1 total=76015 # 1y4wA.489.143 read from T0547.t04.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)L497 (1y4wA)P171 because C (cis) conformation "forbidden" or filtered. T0547 489 :ISYSKDKP 1y4wA 163 :WTTYDAAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=76016 # 1rg8A.489.27 read from T0547.t04.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)L23 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1rg8A)G29 because T (delta_L) conformation "forbidden" or filtered. T0547 489 :I 1rg8A 22 :F T0547 491 :YSKDK 1rg8A 24 :RILPD T0547 497 :L 1rg8A 30 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=76019 # 2b5nA.489.271 read from T0547.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)P496 (2b5nA)K665 because E (beta_S) conformation "forbidden" or filtered. T0547 489 :ISYSKDK 2b5nA 658 :VIYSSNH T0547 497 :L 2b5nA 666 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=76021 # 1o7jA.489.283 read from T0547.t04.many.frag # found chain 1o7jA in training set T0547 489 :ISYSKDKPL 1o7jA 284 :VPPDEELPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=76022 # 1ttuA.489.168 read from T0547.t04.many.frag # found chain 1ttuA in template set T0547 489 :ISYSKDKPL 1ttuA 355 :IGGFVSQRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=76023 # 2ak4D.489.150 read from T0547.t04.many.frag # found chain 2ak4D in template set Warning: unaligning (T0547)P496 (2ak4D)D157 because G (3-10) conformation "forbidden" or filtered. T0547 489 :ISYSKDK 2ak4D 150 :VSQSKDS T0547 497 :L 2ak4D 158 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=76025 # 1ka8A.489.11 read from T0547.t04.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)P496 (1ka8A)S19 because G (3-10) conformation "forbidden" or filtered. T0547 489 :ISYSKDK 1ka8A 12 :LETLPQT T0547 497 :L 1ka8A 20 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=76027 # 1xipA.489.118 read from T0547.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)K493 (1xipA)T122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1xipA)S123 because E (beta_S) conformation "forbidden" or filtered. T0547 489 :ISYS 1xipA 118 :FRTV T0547 495 :KPL 1xipA 124 :FEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=76029 # 1b2pA.489.72 read from T0547.t04.many.frag # found chain 1b2pA in training set Warning: unaligning (T0547)S490 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1b2pA)V75 Warning: unaligning (T0547)Y491 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1b2pA)V75 Warning: unaligning (T0547)P496 (1b2pA)N80 because L (left) conformation "forbidden" or filtered. T0547 489 :I 1b2pA 73 :L T0547 492 :SKDK 1b2pA 76 :ITNE T0547 497 :L 1b2pA 81 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=76032 # 1mspA.489.8 read from T0547.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0547)K493 (1mspA)P13 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1mspA)K16 because Y (epsilon') conformation "forbidden" or filtered. T0547 489 :ISYS 1mspA 9 :INTQ T0547 494 :DK 1mspA 14 :SQ T0547 497 :L 1mspA 17 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=76035 # 2a2cA.489.221 read from T0547.t04.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K495 (2a2cA)S208 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2a2cA)P209 because C (cis) conformation "forbidden" or filtered. T0547 489 :ISYSKD 2a2cA 202 :AKLIEF T0547 497 :L 2a2cA 210 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=76037 # 2msbA.490.62 read from T0547.t04.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)D494 (2msbA)G173 because S (epsilon) conformation "forbidden" or filtered. T0547 490 :SYSK 2msbA 169 :MYVT T0547 495 :KPLF 2msbA 174 :GRLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=76039 # 1w4sA.490.139 read from T0547.t04.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. T0547 490 :SYSKDK 1w4sA 1069 :KKIKLW T0547 497 :LF 1w4sA 1076 :MP Number of specific fragments extracted= 2 number of extra gaps= 1 total=76041 # 2czrA.490.200 read from T0547.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)D494 (2czrA)G197 because T (delta_L) conformation "forbidden" or filtered. T0547 490 :SYSK 2czrA 193 :FDKF T0547 495 :KPLF 2czrA 198 :GEVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=76043 # 1pg6A.490.93 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)L497 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 490 :SYSKDKP 1pg6A 87 :ALAPNTP T0547 498 :F 1pg6A 95 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=76045 # 1k8kC.490.3 read from T0547.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)K493 (1k8kC)L7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)I11 Warning: unaligning (T0547)L497 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)I11 T0547 490 :SYS 1k8kC 4 :HSF T0547 494 :DK 1k8kC 8 :VE T0547 498 :F 1k8kC 12 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=76048 # 1hufA.490.36 read from T0547.t04.many.frag # found chain 1hufA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hufA)E36 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hufA)E36 T0547 490 :SYS 1hufA 32 :AAN T0547 495 :KPLF 1hufA 37 :TTFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=76050 # 1cqyA.490.75 read from T0547.t04.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)K493 (1cqyA)Q496 because P (beta_P) conformation "forbidden" or filtered. T0547 490 :SYS 1cqyA 493 :KSW T0547 494 :DKPLF 1cqyA 497 :TIQQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=76052 # 1ka9H.490.108 read from T0547.t04.many.frag # found chain 1ka9H in template set Warning: unaligning (T0547)D494 (1ka9H)A113 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1ka9H)P117 because C (cis) conformation "forbidden" or filtered. T0547 490 :SYSK 1ka9H 109 :RRFR T0547 495 :KPL 1ka9H 114 :GRV Number of specific fragments extracted= 2 number of extra gaps= 2 total=76054 # 1c4rA.490.115 read from T0547.t04.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)K495 (1c4rA)G231 because P (beta_P) conformation "forbidden" or filtered. T0547 490 :SYSKD 1c4rA 196 :ERYPA T0547 496 :PLF 1c4rA 232 :RQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=76056 # 2ak4D.490.151 read from T0547.t04.many.frag # found chain 2ak4D in template set Warning: unaligning (T0547)P496 (2ak4D)D157 because G (3-10) conformation "forbidden" or filtered. T0547 490 :SYSKDK 2ak4D 151 :SQSKDS T0547 497 :LF 2ak4D 158 :VY Number of specific fragments extracted= 2 number of extra gaps= 1 total=76058 # 2bjiA.490.235 read from T0547.t04.many.frag # found chain 2bjiA in training set T0547 490 :SYSKDKPLF 2bjiA 1236 :LDVTGGPFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=76059 # 2f8aA.490.185 read from T0547.t04.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)P496 (2f8aA)R180 because G (3-10) conformation "forbidden" or filtered. T0547 490 :SYSKDK 2f8aA 174 :LRRYSR T0547 497 :LF 2f8aA 181 :FQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=76061 # 2bduA.490.200 read from T0547.t04.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)S490 (2bduA)K201 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (2bduA)G205 because S (epsilon) conformation "forbidden" or filtered. T0547 491 :YSK 2bduA 202 :GFK T0547 495 :KPLF 2bduA 206 :ELIH Number of specific fragments extracted= 2 number of extra gaps= 2 total=76063 # 1lmiA.490.28 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)Y491 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1lmiA)T35 because G (3-10) conformation "forbidden" or filtered. T0547 490 :S 1lmiA 29 :S T0547 492 :SKDK 1lmiA 31 :LKSS T0547 497 :LF 1lmiA 36 :AV Number of specific fragments extracted= 3 number of extra gaps= 2 total=76066 # 1ieaB.490.149 read from T0547.t04.many.frag # found chain 1ieaB in template set Warning: unaligning (T0547)Y491 (1ieaB)D121 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1ieaB)P124 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1ieaB)I127 because Y (epsilon') conformation "forbidden" or filtered. T0547 490 :S 1ieaB 120 :S T0547 492 :SK 1ieaB 122 :FY T0547 495 :KP 1ieaB 125 :GN T0547 498 :F 1ieaB 128 :E Number of specific fragments extracted= 4 number of extra gaps= 3 total=76070 # 1sdeA.490.87 read from T0547.t04.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)K493 (1sdeA)L91 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1sdeA)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 490 :SYS 1sdeA 88 :NTY T0547 494 :D 1sdeA 92 :P T0547 496 :PLF 1sdeA 94 :LLP Number of specific fragments extracted= 3 number of extra gaps= 2 total=76073 # 1lla.490.248 read from T0547.t04.many.frag # found chain 1lla in template set Warning: unaligning (T0547)S492 (1lla)P251 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1lla)P253 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 because of BadResidue code BAD_PEPTIDE in next template residue (1lla)G255 Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE at template residue (1lla)G255 T0547 490 :SY 1lla 249 :YS T0547 493 :K 1lla 252 :R T0547 497 :LF 1lla 256 :LK Number of specific fragments extracted= 3 number of extra gaps= 2 total=76076 # 2b5nA.490.272 read from T0547.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)P496 (2b5nA)K665 because E (beta_S) conformation "forbidden" or filtered. T0547 490 :SYSKDK 2b5nA 659 :IYSSNH T0547 497 :LF 2b5nA 666 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76078 # 1ttuA.490.169 read from T0547.t04.many.frag # found chain 1ttuA in template set Warning: unaligning (T0547)S490 (1ttuA)G356 because Y (epsilon') conformation "forbidden" or filtered. T0547 491 :YSKDKPLF 1ttuA 357 :GFVSQRIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=76079 # 2a2cA.490.222 read from T0547.t04.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)P496 (2a2cA)P209 because C (cis) conformation "forbidden" or filtered. T0547 490 :SYSKDK 2a2cA 203 :KLIEFS T0547 497 :LF 2a2cA 210 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=76081 # 1zjcA.490.266 read from T0547.t04.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)Y491 (1zjcA)G265 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1zjcA)K270 because G (3-10) conformation "forbidden" or filtered. T0547 490 :S 1zjcA 264 :D T0547 492 :SKDK 1zjcA 266 :YVTN T0547 497 :LF 1zjcA 271 :LP Number of specific fragments extracted= 3 number of extra gaps= 2 total=76084 # 1iow.490.154 read from T0547.t04.many.frag # found chain 1iow in template set Warning: unaligning (T0547)D494 (1iow)A159 because S (epsilon) conformation "forbidden" or filtered. T0547 490 :SYSK 1iow 155 :SKVV T0547 495 :KPLF 1iow 160 :ENAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=76086 # 1h72C.490.149 read from T0547.t04.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)K493 (1h72C)E157 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1h72C)P158 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1h72C)L159 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1h72C)E160 because E (beta_S) conformation "forbidden" or filtered. T0547 490 :SYS 1h72C 154 :TNY T0547 497 :LF 1h72C 161 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=76088 # 1dzkA.490.29 read from T0547.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)S490 (1dzkA)G30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S492 (1dzkA)N32 because L (left) conformation "forbidden" or filtered. T0547 491 :Y 1dzkA 31 :E T0547 493 :KDKPLF 1dzkA 33 :APFQVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=76090 # 1y4wA.490.144 read from T0547.t04.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)K495 (1y4wA)A169 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1y4wA)P171 because C (cis) conformation "forbidden" or filtered. T0547 490 :SYSKD 1y4wA 164 :TTYDA T0547 496 :P 1y4wA 170 :N T0547 498 :F 1y4wA 172 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=76093 # 1dmlA.490.210 read from T0547.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)S492 (1dmlA)F213 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1dmlA)T214 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1dmlA)S216 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1dmlA)T217 because E (beta_S) conformation "forbidden" or filtered. T0547 490 :SY 1dmlA 211 :SV T0547 494 :D 1dmlA 215 :T T0547 497 :LF 1dmlA 218 :CV Number of specific fragments extracted= 3 number of extra gaps= 2 total=76096 # 1mspA.490.9 read from T0547.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0547)K493 (1mspA)P13 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1mspA)K16 because Y (epsilon') conformation "forbidden" or filtered. T0547 490 :SYS 1mspA 10 :NTQ T0547 494 :DK 1mspA 14 :SQ T0547 497 :LF 1mspA 17 :IV Number of specific fragments extracted= 3 number of extra gaps= 2 total=76099 # 1ka8A.490.12 read from T0547.t04.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)D494 (1ka8A)Q17 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1ka8A)S19 because G (3-10) conformation "forbidden" or filtered. T0547 490 :SYSK 1ka8A 13 :ETLP T0547 495 :K 1ka8A 18 :T T0547 497 :LF 1ka8A 20 :GM Number of specific fragments extracted= 3 number of extra gaps= 2 total=76102 # 1acc.490.653 read from T0547.t04.many.frag # found chain 1acc in template set T0547 490 :SYSKDKPLF 1acc 654 :EVINDRYDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=76103 # 1vb3A.490.400 read from T0547.t04.many.frag # found chain 1vb3A in template set T0547 490 :SYSKDKPLF 1vb3A 401 :AERADLPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=76104 # 2msbA.491.63 read from T0547.t04.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)D494 (2msbA)G173 because S (epsilon) conformation "forbidden" or filtered. T0547 491 :YSK 2msbA 170 :YVT T0547 495 :KPLFL 2msbA 174 :GRLTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=76106 # 1w4sA.491.140 read from T0547.t04.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)D494 (1w4sA)L1073 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. T0547 491 :YSK 1w4sA 1070 :KIK T0547 495 :K 1w4sA 1074 :W T0547 497 :LFL 1w4sA 1076 :MPV Number of specific fragments extracted= 3 number of extra gaps= 2 total=76109 # 1pg6A.491.94 read from T0547.t04.many.frag # found chain 1pg6A in training set T0547 491 :YSKDKPLFL 1pg6A 88 :LAPNTPGQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=76110 # 2czrA.491.201 read from T0547.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)S492 (2czrA)K195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (2czrA)G198 because P (beta_P) conformation "forbidden" or filtered. T0547 491 :Y 2czrA 194 :D T0547 493 :KD 2czrA 196 :FG T0547 496 :PLFL 2czrA 199 :EVPM Number of specific fragments extracted= 3 number of extra gaps= 2 total=76113 # 1k8kC.491.4 read from T0547.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)K493 (1k8kC)L7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)I11 Warning: unaligning (T0547)L497 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)I11 Warning: unaligning (T0547)L499 (1k8kC)C13 because Y (epsilon') conformation "forbidden" or filtered. T0547 491 :YS 1k8kC 5 :SF T0547 494 :DK 1k8kC 8 :VE T0547 498 :F 1k8kC 12 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=76116 # 1hufA.491.37 read from T0547.t04.many.frag # found chain 1hufA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hufA)E36 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hufA)E36 Warning: unaligning (T0547)L499 (1hufA)G41 because L (left) conformation "forbidden" or filtered. T0547 491 :YS 1hufA 33 :AN T0547 495 :KPLF 1hufA 37 :TTFQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=76118 # 1cqyA.491.76 read from T0547.t04.many.frag # found chain 1cqyA in template set T0547 491 :YSKDKPLFL 1cqyA 494 :SWQTIQQSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=76119 # 1lla.491.249 read from T0547.t04.many.frag # found chain 1lla in template set Warning: unaligning (T0547)K493 (1lla)R252 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 because of BadResidue code BAD_PEPTIDE in next template residue (1lla)G255 Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE at template residue (1lla)G255 T0547 491 :YS 1lla 250 :SP T0547 494 :D 1lla 253 :P T0547 497 :LFL 1lla 256 :LKL Number of specific fragments extracted= 3 number of extra gaps= 2 total=76122 # 2ak4D.491.152 read from T0547.t04.many.frag # found chain 2ak4D in template set Warning: unaligning (T0547)P496 (2ak4D)D157 because G (3-10) conformation "forbidden" or filtered. T0547 491 :YSKDK 2ak4D 152 :QSKDS T0547 497 :LFL 2ak4D 158 :VYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=76124 # 1lmiA.491.29 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)D494 (1lmiA)S33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1lmiA)T35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L499 because of BadResidue code BAD_PEPTIDE in next template residue (1lmiA)P39 T0547 491 :YSK 1lmiA 30 :DLK T0547 495 :K 1lmiA 34 :S T0547 497 :LF 1lmiA 36 :AV Number of specific fragments extracted= 3 number of extra gaps= 3 total=76127 # 1ka9H.491.109 read from T0547.t04.many.frag # found chain 1ka9H in template set Warning: unaligning (T0547)D494 (1ka9H)A113 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1ka9H)G114 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1ka9H)P117 because C (cis) conformation "forbidden" or filtered. T0547 491 :YSK 1ka9H 110 :RFR T0547 496 :PL 1ka9H 115 :RV T0547 499 :L 1ka9H 118 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=76130 # 1vb3A.491.401 read from T0547.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)F498 (1vb3A)L409 because G (3-10) conformation "forbidden" or filtered. T0547 491 :YSKDKPL 1vb3A 402 :ERADLPL T0547 499 :L 1vb3A 410 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=76132 # 1gycA.491.178 read from T0547.t04.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)S492 (1gycA)T180 because D (zeta) conformation "forbidden" or filtered. T0547 491 :Y 1gycA 179 :S T0547 493 :KDKPLFL 1gycA 181 :PTAALAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76134 # 1yu0A.491.91 read from T0547.t04.many.frag # found chain 1yu0A in training set T0547 491 :YSKDKPLFL 1yu0A 92 :FTADTAITM Number of specific fragments extracted= 1 number of extra gaps= 0 total=76135 # 2bjiA.491.236 read from T0547.t04.many.frag # found chain 2bjiA in training set Warning: unaligning (T0547)K493 (2bjiA)T1239 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (2bjiA)G1240 because T (delta_L) conformation "forbidden" or filtered. T0547 491 :YS 2bjiA 1237 :DV T0547 495 :KPLFL 2bjiA 1241 :GPFDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=76137 # 1h72C.491.150 read from T0547.t04.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)D494 (1h72C)P158 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1h72C)E160 because E (beta_S) conformation "forbidden" or filtered. T0547 491 :YSK 1h72C 155 :NYE T0547 495 :K 1h72C 159 :L T0547 497 :LFL 1h72C 161 :VLH Number of specific fragments extracted= 3 number of extra gaps= 2 total=76140 # 1dzkA.491.30 read from T0547.t04.many.frag # found chain 1dzkA in training set T0547 491 :YSKDKPLFL 1dzkA 31 :ENAPFQVFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=76141 # 1c4rA.491.116 read from T0547.t04.many.frag # found chain 1c4rA in template set Warning: unaligning (T0547)S492 (1c4rA)Y198 because D (zeta) conformation "forbidden" or filtered. T0547 491 :Y 1c4rA 197 :R T0547 493 :KDKPLFL 1c4rA 199 :PAGRQLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=76143 # 2f8aA.491.186 read from T0547.t04.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)D494 (2f8aA)S178 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2f8aA)R180 because G (3-10) conformation "forbidden" or filtered. T0547 491 :YSK 2f8aA 175 :RRY T0547 495 :K 2f8aA 179 :R T0547 497 :LFL 2f8aA 181 :FQT Number of specific fragments extracted= 3 number of extra gaps= 2 total=76146 # 2a2cA.491.223 read from T0547.t04.many.frag # found chain 2a2cA in training set T0547 491 :YSKDKPLFL 2a2cA 204 :LIEFSPLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=76147 # 2b5nA.491.273 read from T0547.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)P496 (2b5nA)K665 because E (beta_S) conformation "forbidden" or filtered. T0547 491 :YSKDK 2b5nA 660 :YSSNH T0547 497 :LFL 2b5nA 666 :LVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=76149 # 1mspA.491.10 read from T0547.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0547)K493 (1mspA)P13 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1mspA)Q15 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1mspA)K16 because Y (epsilon') conformation "forbidden" or filtered. T0547 491 :YS 1mspA 11 :TQ T0547 494 :D 1mspA 14 :S T0547 497 :LFL 1mspA 17 :IVF Number of specific fragments extracted= 3 number of extra gaps= 2 total=76152 # 1sdeA.491.88 read from T0547.t04.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)K495 (1sdeA)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 491 :YSKD 1sdeA 89 :TYLP T0547 496 :PLFL 1sdeA 94 :LLPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=76154 # 1m9zA.491.66 read from T0547.t04.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)P496 (1m9zA)T97 because E (beta_S) conformation "forbidden" or filtered. T0547 491 :YSKDK 1m9zA 92 :DAASP T0547 497 :LFL 1m9zA 98 :CIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=76156 # 1y4wA.491.145 read from T0547.t04.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)L497 (1y4wA)P171 because C (cis) conformation "forbidden" or filtered. T0547 491 :YSKDKP 1y4wA 165 :TYDAAN T0547 498 :FL 1y4wA 172 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=76158 # 1mtpA.491.285 read from T0547.t04.many.frag # found chain 1mtpA in training set T0547 491 :YSKDKPLFL 1mtpA 288 :GISTVPLYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=76159 # 1ieaB.491.150 read from T0547.t04.many.frag # found chain 1ieaB in template set Warning: unaligning (T0547)Y491 (1ieaB)D121 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1ieaB)P124 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1ieaB)I127 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :SK 1ieaB 122 :FY T0547 495 :KP 1ieaB 125 :GN T0547 498 :FL 1ieaB 128 :EV Number of specific fragments extracted= 3 number of extra gaps= 3 total=76162 # 1wlgA.491.168 read from T0547.t04.many.frag # found chain 1wlgA in training set Warning: unaligning (T0547)S492 (1wlgA)G240 because T (delta_L) conformation "forbidden" or filtered. T0547 491 :Y 1wlgA 239 :S T0547 493 :KDKPLFL 1wlgA 241 :GTVNITT Number of specific fragments extracted= 2 number of extra gaps= 1 total=76164 # 1oewA.491.175 read from T0547.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)K493 (1oewA)Y178 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1oewA)T179 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1oewA)G180 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1oewA)S181 because E (beta_S) conformation "forbidden" or filtered. T0547 491 :YS 1oewA 176 :TA T0547 497 :LFL 1oewA 182 :ITY Number of specific fragments extracted= 2 number of extra gaps= 1 total=76166 # 1zjcA.491.267 read from T0547.t04.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)D494 (1zjcA)T268 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1zjcA)K270 because G (3-10) conformation "forbidden" or filtered. T0547 491 :YSK 1zjcA 265 :GYV T0547 495 :K 1zjcA 269 :N T0547 497 :LFL 1zjcA 271 :LPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=76169 # 2msbA.492.64 read from T0547.t04.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)D494 (2msbA)G173 because S (epsilon) conformation "forbidden" or filtered. T0547 492 :SK 2msbA 171 :VT T0547 495 :KPLFLH 2msbA 174 :GRLTYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=76171 # 1pg6A.492.95 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)L497 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :SKDKP 1pg6A 89 :APNTP T0547 498 :FLH 1pg6A 95 :QIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76173 # 1w4sA.492.141 read from T0547.t04.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)S492 (1w4sA)I1071 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. T0547 493 :KDK 1w4sA 1072 :KLW T0547 497 :LFLH 1w4sA 1076 :MPVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=76175 # 1k8kC.492.5 read from T0547.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)K493 (1k8kC)L7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)I11 Warning: unaligning (T0547)L497 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)I11 Warning: unaligning (T0547)L499 (1k8kC)C13 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :S 1k8kC 6 :F T0547 494 :DK 1k8kC 8 :VE T0547 498 :F 1k8kC 12 :S T0547 500 :H 1k8kC 14 :H Number of specific fragments extracted= 4 number of extra gaps= 3 total=76179 # 1lla.492.250 read from T0547.t04.many.frag # found chain 1lla in template set Warning: unaligning (T0547)K495 because of BadResidue code BAD_PEPTIDE in next template residue (1lla)G255 Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE at template residue (1lla)G255 T0547 492 :SKD 1lla 251 :PRP T0547 497 :LFLH 1lla 256 :LKLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=76181 # 2czrA.492.202 read from T0547.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)D494 (2czrA)G197 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (2czrA)G198 because P (beta_P) conformation "forbidden" or filtered. T0547 492 :SK 2czrA 195 :KF T0547 496 :PLFLH 2czrA 199 :EVPMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=76183 # 1yu0A.492.92 read from T0547.t04.many.frag # found chain 1yu0A in training set T0547 492 :SKDKPLFLH 1yu0A 93 :TADTAITMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=76184 # 1gycA.492.179 read from T0547.t04.many.frag # found chain 1gycA in template set T0547 492 :SKDKPLFLH 1gycA 180 :TPTAALAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=76185 # 1hufA.492.38 read from T0547.t04.many.frag # found chain 1hufA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hufA)E36 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hufA)E36 Warning: unaligning (T0547)L499 (1hufA)G41 because L (left) conformation "forbidden" or filtered. T0547 492 :S 1hufA 34 :N T0547 495 :KPLF 1hufA 37 :TTFQ T0547 500 :H 1hufA 42 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=76188 # 1cqyA.492.77 read from T0547.t04.many.frag # found chain 1cqyA in template set T0547 492 :SKDKPLFLH 1cqyA 495 :WQTIQQSWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=76189 # 1lmiA.492.30 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)K493 (1lmiA)K32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1lmiA)T35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L499 because of BadResidue code BAD_PEPTIDE in next template residue (1lmiA)P39 Warning: unaligning (T0547)H500 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)P39 T0547 492 :S 1lmiA 31 :L T0547 494 :DK 1lmiA 33 :SS T0547 497 :LF 1lmiA 36 :AV Number of specific fragments extracted= 3 number of extra gaps= 3 total=76192 # 2ak4D.492.153 read from T0547.t04.many.frag # found chain 2ak4D in template set Warning: unaligning (T0547)P496 (2ak4D)D157 because G (3-10) conformation "forbidden" or filtered. T0547 492 :SKDK 2ak4D 153 :SKDS T0547 497 :LFLH 2ak4D 158 :VYIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=76194 # 1vb3A.492.402 read from T0547.t04.many.frag # found chain 1vb3A in template set T0547 492 :SKDKPLFLH 1vb3A 403 :RADLPLLSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=76195 # 1m9zA.492.67 read from T0547.t04.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)P496 (1m9zA)T97 because E (beta_S) conformation "forbidden" or filtered. T0547 492 :SKDK 1m9zA 93 :AASP T0547 497 :LFLH 1m9zA 98 :CIMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=76197 # 2a2cA.492.224 read from T0547.t04.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K495 (2a2cA)S208 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2a2cA)P209 because C (cis) conformation "forbidden" or filtered. T0547 492 :SKD 2a2cA 205 :IEF T0547 497 :LFLH 2a2cA 210 :LRAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=76199 # 1at0.492.10 read from T0547.t04.many.frag # found chain 1at0 in template set T0547 492 :SKDKPLFLH 1at0 268 :ESGVRKPLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=76200 # 1twfC.492.136 read from T0547.t04.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)D494 (1twfC)G139 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1twfC)G141 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1twfC)C145 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :SK 1twfC 137 :KE T0547 495 :K 1twfC 140 :N T0547 497 :LFL 1twfC 142 :VLI Number of specific fragments extracted= 3 number of extra gaps= 3 total=76203 # 1d3yA.492.222 read from T0547.t04.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)K495 (1d3yA)Y294 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1d3yA)D295 because L (left) conformation "forbidden" or filtered. T0547 492 :SKD 1d3yA 291 :IID T0547 497 :LFLH 1d3yA 296 :LPTH Number of specific fragments extracted= 2 number of extra gaps= 1 total=76205 # 1h72C.492.151 read from T0547.t04.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)D494 (1h72C)P158 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1h72C)E160 because E (beta_S) conformation "forbidden" or filtered. T0547 492 :SK 1h72C 156 :YE T0547 495 :K 1h72C 159 :L T0547 497 :LFLH 1h72C 161 :VLHI Number of specific fragments extracted= 3 number of extra gaps= 2 total=76208 # 2b5nA.492.274 read from T0547.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)P496 (2b5nA)K665 because E (beta_S) conformation "forbidden" or filtered. T0547 492 :SKDK 2b5nA 661 :SSNH T0547 497 :LFLH 2b5nA 666 :LVFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=76210 # 1w9zA.492.241 read from T0547.t04.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE in next template residue (1w9zA)S244 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE at template residue (1w9zA)S244 Warning: unaligning (T0547)P496 (1w9zA)S246 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :S 1w9zA 242 :A T0547 495 :K 1w9zA 245 :G T0547 497 :LFLH 1w9zA 247 :LPLT Number of specific fragments extracted= 3 number of extra gaps= 2 total=76213 # 1ka9H.492.110 read from T0547.t04.many.frag # found chain 1ka9H in template set Warning: unaligning (T0547)S492 (1ka9H)F111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1ka9H)G114 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1ka9H)P117 because C (cis) conformation "forbidden" or filtered. T0547 493 :KD 1ka9H 112 :RA T0547 496 :PL 1ka9H 115 :RV T0547 499 :LH 1ka9H 118 :QM Number of specific fragments extracted= 3 number of extra gaps= 3 total=76216 # 1y4wA.492.146 read from T0547.t04.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)L497 (1y4wA)P171 because C (cis) conformation "forbidden" or filtered. T0547 492 :SKDKP 1y4wA 166 :YDAAN T0547 498 :FLH 1y4wA 172 :VIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=76218 # 1dzkA.492.31 read from T0547.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)S492 (1dzkA)N32 because L (left) conformation "forbidden" or filtered. T0547 493 :KDKPLFLH 1dzkA 33 :APFQVFMR Number of specific fragments extracted= 1 number of extra gaps= 1 total=76219 # 1oewA.492.176 read from T0547.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)S492 (1oewA)A177 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1oewA)Y178 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1oewA)S181 because E (beta_S) conformation "forbidden" or filtered. T0547 494 :DK 1oewA 179 :TG T0547 497 :LFLH 1oewA 182 :ITYT Number of specific fragments extracted= 2 number of extra gaps= 2 total=76221 # 1g8kA.492.667 read from T0547.t04.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)S492 (1g8kA)T668 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1g8kA)G671 because T (delta_L) conformation "forbidden" or filtered. T0547 493 :KD 1g8kA 669 :DD T0547 496 :PLFLH 1g8kA 672 :KAHFK Number of specific fragments extracted= 2 number of extra gaps= 2 total=76223 # 1qxmA.492.132 read from T0547.t04.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)K495 (1qxmA)D122 because T (delta_L) conformation "forbidden" or filtered. T0547 492 :SKD 1qxmA 119 :NID T0547 496 :PLFLH 1qxmA 123 :TLMVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=76225 # 2f8aA.492.187 read from T0547.t04.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)P496 (2f8aA)R180 because G (3-10) conformation "forbidden" or filtered. T0547 492 :SKDK 2f8aA 176 :RYSR T0547 497 :LFLH 2f8aA 181 :FQTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=76227 # 1mspA.492.11 read from T0547.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0547)K493 (1mspA)P13 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1mspA)K16 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :S 1mspA 12 :Q T0547 494 :DK 1mspA 14 :SQ T0547 497 :LFLH 1mspA 17 :IVFN Number of specific fragments extracted= 3 number of extra gaps= 2 total=76230 # 2bjiA.492.237 read from T0547.t04.many.frag # found chain 2bjiA in training set Warning: unaligning (T0547)D494 (2bjiA)G1240 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (2bjiA)M1246 because G (3-10) conformation "forbidden" or filtered. T0547 492 :SK 2bjiA 1238 :VT T0547 495 :KPLFL 2bjiA 1241 :GPFDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=76232 # 1pg6A.493.96 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)L497 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 493 :KDKP 1pg6A 90 :PNTP T0547 498 :FLHD 1pg6A 95 :QIVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=76234 # 2msbA.493.65 read from T0547.t04.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)K495 (2msbA)G174 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (2msbA)S179 because Y (epsilon') conformation "forbidden" or filtered. T0547 493 :KD 2msbA 172 :TG T0547 496 :PLFL 2msbA 175 :RLTY T0547 501 :D 2msbA 180 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=76237 # 1lla.493.251 read from T0547.t04.many.frag # found chain 1lla in template set Warning: unaligning (T0547)K495 because of BadResidue code BAD_PEPTIDE in next template residue (1lla)G255 Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE at template residue (1lla)G255 T0547 493 :KD 1lla 252 :RP T0547 497 :LFLHD 1lla 256 :LKLRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=76239 # 1w4sA.493.142 read from T0547.t04.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)D494 (1w4sA)L1073 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. T0547 493 :K 1w4sA 1072 :K T0547 495 :K 1w4sA 1074 :W T0547 497 :LFLHD 1w4sA 1076 :MPVSS Number of specific fragments extracted= 3 number of extra gaps= 2 total=76242 # 1gycA.493.180 read from T0547.t04.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)K495 (1gycA)A183 because P (beta_P) conformation "forbidden" or filtered. T0547 493 :KD 1gycA 181 :PT T0547 496 :PLFLHD 1gycA 184 :ALAVIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=76244 # 1yu0A.493.93 read from T0547.t04.many.frag # found chain 1yu0A in training set T0547 493 :KDKPLFLHD 1yu0A 94 :ADTAITMPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=76245 # 1k8kC.493.6 read from T0547.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)K493 (1k8kC)L7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)I11 Warning: unaligning (T0547)L497 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)I11 Warning: unaligning (T0547)D501 (1k8kC)A15 because E (beta_S) conformation "forbidden" or filtered. T0547 494 :DK 1k8kC 8 :VE T0547 498 :FLH 1k8kC 12 :SCH Number of specific fragments extracted= 2 number of extra gaps= 3 total=76247 # 2czrA.493.203 read from T0547.t04.many.frag # found chain 2czrA in template set T0547 493 :KDKPLFLHD 2czrA 196 :FGGEVPMDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=76248 # 1lmiA.493.31 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)K493 (1lmiA)K32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1lmiA)T35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L499 because of BadResidue code BAD_PEPTIDE in next template residue (1lmiA)P39 Warning: unaligning (T0547)H500 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)P39 Warning: unaligning (T0547)D501 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)G40 T0547 494 :DK 1lmiA 33 :SS T0547 497 :LF 1lmiA 36 :AV Number of specific fragments extracted= 2 number of extra gaps= 3 total=76250 # 1m9zA.493.68 read from T0547.t04.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)D494 (1m9zA)S95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1m9zA)T97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1m9zA)E102 because P (beta_P) conformation "forbidden" or filtered. T0547 493 :K 1m9zA 94 :A T0547 495 :K 1m9zA 96 :P T0547 497 :LFLH 1m9zA 98 :CIMK Number of specific fragments extracted= 3 number of extra gaps= 3 total=76253 # 1cqyA.493.78 read from T0547.t04.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)D501 (1cqyA)P504 because C (cis) conformation "forbidden" or filtered. T0547 493 :KDKPLFLH 1cqyA 496 :QTIQQSWN Number of specific fragments extracted= 1 number of extra gaps= 1 total=76254 # 1at0.493.11 read from T0547.t04.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)D494 (1at0)G270 because T (delta_L) conformation "forbidden" or filtered. T0547 493 :K 1at0 269 :S T0547 495 :KPLFLHD 1at0 271 :VRKPLGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=76256 # 1twfC.493.137 read from T0547.t04.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)P496 (1twfC)G141 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1twfC)C145 because Y (epsilon') conformation "forbidden" or filtered. T0547 493 :KDK 1twfC 138 :EGN T0547 497 :LFL 1twfC 142 :VLI T0547 501 :D 1twfC 146 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=76259 # 1d3yA.493.223 read from T0547.t04.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)P496 (1d3yA)D295 because L (left) conformation "forbidden" or filtered. T0547 493 :KDK 1d3yA 292 :IDY T0547 497 :LFLHD 1d3yA 296 :LPTHP Number of specific fragments extracted= 2 number of extra gaps= 1 total=76261 # 1w9zA.493.242 read from T0547.t04.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE in next template residue (1w9zA)S244 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE at template residue (1w9zA)S244 Warning: unaligning (T0547)K495 (1w9zA)G245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1w9zA)S246 because Y (epsilon') conformation "forbidden" or filtered. T0547 497 :LFLHD 1w9zA 247 :LPLTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=76262 # 1vb3A.493.403 read from T0547.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)D501 (1vb3A)N412 because E (beta_S) conformation "forbidden" or filtered. T0547 493 :KDKPLFLH 1vb3A 404 :ADLPLLSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=76263 # 1oewA.493.177 read from T0547.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)P496 (1oewA)S181 because E (beta_S) conformation "forbidden" or filtered. T0547 493 :KDK 1oewA 178 :YTG T0547 497 :LFLHD 1oewA 182 :ITYTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=76265 # 2a2cA.493.225 read from T0547.t04.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K495 (2a2cA)S208 because L (left) conformation "forbidden" or filtered. T0547 493 :KD 2a2cA 206 :EF T0547 496 :PLFLHD 2a2cA 209 :PLRATD Number of specific fragments extracted= 2 number of extra gaps= 1 total=76267 # 2ak4D.493.154 read from T0547.t04.many.frag # found chain 2ak4D in template set Warning: unaligning (T0547)P496 (2ak4D)D157 because G (3-10) conformation "forbidden" or filtered. T0547 493 :KDK 2ak4D 154 :KDS T0547 497 :LFLHD 2ak4D 158 :VYITD Number of specific fragments extracted= 2 number of extra gaps= 1 total=76269 # 1hufA.493.39 read from T0547.t04.many.frag # found chain 1hufA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hufA)E36 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hufA)E36 T0547 495 :KPLFLHD 1hufA 37 :TTFQGLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=76270 # 1h72C.493.152 read from T0547.t04.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)D494 (1h72C)P158 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1h72C)E160 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1h72C)P165 because P (beta_P) conformation "forbidden" or filtered. T0547 493 :K 1h72C 157 :E T0547 495 :K 1h72C 159 :L T0547 497 :LFLH 1h72C 161 :VLHI Number of specific fragments extracted= 3 number of extra gaps= 3 total=76273 1l2hA expands to /projects/compbio/data/pdb/1l2h.pdb.gz 1l2hA:Skipped atom 62, because occupancy 0.500 <= existing 0.500 in 1l2hA Skipped atom 64, because occupancy 0.500 <= existing 0.500 in 1l2hA Skipped atom 66, because occupancy 0.500 <= existing 0.500 in 1l2hA Skipped atom 68, because occupancy 0.500 <= existing 0.500 in 1l2hA Skipped atom 70, because occupancy 0.500 <= existing 0.500 in 1l2hA Skipped atom 326, because occupancy 0.300 <= existing 0.700 in 1l2hA Skipped atom 341, because occupancy 0.300 <= existing 0.700 in 1l2hA # 1l2hA.493.75 read from T0547.t04.many.frag # adding 1l2hA to template set # found chain 1l2hA in template set Warning: unaligning (T0547)P496 (1l2hA)T79 because E (beta_S) conformation "forbidden" or filtered. T0547 493 :KDK 1l2hA 76 :DKP T0547 497 :LFLHD 1l2hA 80 :LQLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=76275 1yymG expands to /projects/compbio/data/pdb/1yym.pdb.gz 1yymG:# 1yymG.493.123 read from T0547.t04.many.frag # adding 1yymG to template set # found chain 1yymG in template set T0547 493 :KDKPLFLHD 1yymG 266 :AEEEIVIRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=76276 # 2b5nA.493.275 read from T0547.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)P496 (2b5nA)K665 because E (beta_S) conformation "forbidden" or filtered. T0547 493 :KDK 2b5nA 662 :SNH T0547 497 :LFLHD 2b5nA 666 :LVFSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=76278 # 1qxmA.493.133 read from T0547.t04.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)H500 (1qxmA)S127 because Y (epsilon') conformation "forbidden" or filtered. T0547 493 :KDKPLFL 1qxmA 120 :IDDTLMV T0547 501 :D 1qxmA 128 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=76280 # 1dzkA.493.32 read from T0547.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)K493 (1dzkA)A33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1dzkA)S41 because Y (epsilon') conformation "forbidden" or filtered. T0547 494 :DKPLFLH 1dzkA 34 :PFQVFMR Number of specific fragments extracted= 1 number of extra gaps= 2 total=76281 # 1ifrA.493.4 read from T0547.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0547)K495 (1ifrA)G438 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1ifrA)E444 because E (beta_S) conformation "forbidden" or filtered. T0547 493 :KD 1ifrA 436 :TS T0547 496 :PLFLH 1ifrA 439 :RVAVE Number of specific fragments extracted= 2 number of extra gaps= 2 total=76283 # 2f8aA.493.188 read from T0547.t04.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)P496 (2f8aA)R180 because G (3-10) conformation "forbidden" or filtered. T0547 493 :KDK 2f8aA 177 :YSR T0547 497 :LFLHD 2f8aA 181 :FQTID Number of specific fragments extracted= 2 number of extra gaps= 1 total=76285 # 1azo.493.139 read from T0547.t04.many.frag # found chain 1azo in training set T0547 493 :KDKPLFLHD 1azo 137 :RVGSPLLWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=76286 # 1qazA.493.258 read from T0547.t04.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)P496 (1qazA)G265 because L (left) conformation "forbidden" or filtered. T0547 493 :KDK 1qazA 262 :SRQ T0547 497 :LFLHD 1qazA 266 :IDLYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=76288 # 1pg6A.494.97 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)L497 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1pg6A)A98 because E (beta_S) conformation "forbidden" or filtered. T0547 494 :DKP 1pg6A 91 :NTP T0547 498 :FLH 1pg6A 95 :QIV T0547 502 :V 1pg6A 99 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=76291 # 1lla.494.252 read from T0547.t04.many.frag # found chain 1lla in template set Warning: unaligning (T0547)K495 because of BadResidue code BAD_PEPTIDE in next template residue (1lla)G255 Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE at template residue (1lla)G255 T0547 494 :D 1lla 253 :P T0547 497 :LFLHDV 1lla 256 :LKLRDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=76293 # 1gycA.494.181 read from T0547.t04.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)K495 (1gycA)A183 because P (beta_P) conformation "forbidden" or filtered. T0547 494 :D 1gycA 182 :T T0547 496 :PLFLHDV 1gycA 184 :ALAVINV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76295 # 1w4sA.494.143 read from T0547.t04.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. T0547 494 :DK 1w4sA 1073 :LW T0547 497 :LFLHDV 1w4sA 1076 :MPVSSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76297 # 1yu0A.494.94 read from T0547.t04.many.frag # found chain 1yu0A in training set T0547 494 :DKPLFLHDV 1yu0A 95 :DTAITMPAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=76298 # 1d3yA.494.224 read from T0547.t04.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)K495 (1d3yA)Y294 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1d3yA)D295 because L (left) conformation "forbidden" or filtered. T0547 494 :D 1d3yA 293 :D T0547 497 :LFLHDV 1d3yA 296 :LPTHPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=76300 # 2msbA.494.66 read from T0547.t04.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)H500 (2msbA)S179 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (2msbA)N180 because D (zeta) conformation "forbidden" or filtered. T0547 494 :DKPLFL 2msbA 173 :GGRLTY T0547 502 :V 2msbA 181 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=76302 # 1lmiA.494.32 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P496 (1lmiA)T35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L499 because of BadResidue code BAD_PEPTIDE in next template residue (1lmiA)P39 Warning: unaligning (T0547)H500 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)P39 Warning: unaligning (T0547)D501 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)G40 T0547 494 :DK 1lmiA 33 :SS T0547 497 :LF 1lmiA 36 :AV T0547 502 :V 1lmiA 41 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=76305 # 1at0.494.12 read from T0547.t04.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)D494 (1at0)G270 because T (delta_L) conformation "forbidden" or filtered. T0547 495 :KPLFLHDV 1at0 271 :VRKPLGEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=76306 # 1w9zA.494.243 read from T0547.t04.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE at template residue (1w9zA)S244 Warning: unaligning (T0547)K495 (1w9zA)G245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1w9zA)S246 because Y (epsilon') conformation "forbidden" or filtered. T0547 497 :LFLHDV 1w9zA 247 :LPLTTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=76307 # 1qazA.494.259 read from T0547.t04.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)P496 (1qazA)G265 because L (left) conformation "forbidden" or filtered. T0547 494 :DK 1qazA 263 :RQ T0547 497 :LFLHDV 1qazA 266 :IDLYAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=76309 # 1twfC.494.138 read from T0547.t04.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)D494 (1twfC)G139 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1twfC)G141 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1twfC)C145 because Y (epsilon') conformation "forbidden" or filtered. T0547 495 :K 1twfC 140 :N T0547 497 :LFL 1twfC 142 :VLI T0547 501 :DV 1twfC 146 :KL Number of specific fragments extracted= 3 number of extra gaps= 3 total=76312 # 2a2cA.494.226 read from T0547.t04.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K495 (2a2cA)S208 because L (left) conformation "forbidden" or filtered. T0547 494 :D 2a2cA 207 :F T0547 496 :PLFLHDV 2a2cA 209 :PLRATDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76314 # 1vb3A.494.404 read from T0547.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)K495 (1vb3A)L406 because P (beta_P) conformation "forbidden" or filtered. T0547 494 :D 1vb3A 405 :D T0547 496 :PLFLHDV 1vb3A 407 :PLLSHNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=76316 # 1l2hA.494.76 read from T0547.t04.many.frag # found chain 1l2hA in template set Warning: unaligning (T0547)D494 (1l2hA)K77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1l2hA)T79 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :K 1l2hA 78 :P T0547 497 :LFLHDV 1l2hA 80 :LQLESV Number of specific fragments extracted= 2 number of extra gaps= 2 total=76318 # 1m9zA.494.69 read from T0547.t04.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)D494 (1m9zA)S95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1m9zA)T97 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :K 1m9zA 96 :P T0547 497 :LFLHDV 1m9zA 98 :CIMKEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=76320 # 1oewA.494.178 read from T0547.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)P496 (1oewA)S181 because E (beta_S) conformation "forbidden" or filtered. T0547 494 :DK 1oewA 179 :TG T0547 497 :LFLHDV 1oewA 182 :ITYTAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76322 # 1k8kC.494.7 read from T0547.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)I11 Warning: unaligning (T0547)L497 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)I11 Warning: unaligning (T0547)H500 (1k8kC)H14 because Y (epsilon') conformation "forbidden" or filtered. T0547 494 :DK 1k8kC 8 :VE T0547 498 :FL 1k8kC 12 :SC T0547 501 :DV 1k8kC 15 :AW Number of specific fragments extracted= 3 number of extra gaps= 2 total=76325 # 2czrA.494.204 read from T0547.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)K495 (2czrA)G198 because P (beta_P) conformation "forbidden" or filtered. T0547 494 :D 2czrA 197 :G T0547 496 :PLFLHDV 2czrA 199 :EVPMDKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=76327 # 1cqyA.494.79 read from T0547.t04.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)F498 (1cqyA)S501 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1cqyA)P504 because C (cis) conformation "forbidden" or filtered. T0547 494 :DKPL 1cqyA 497 :TIQQ T0547 499 :LH 1cqyA 502 :WN T0547 502 :V 1cqyA 505 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=76330 # 1h72C.494.153 read from T0547.t04.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)D494 (1h72C)P158 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1h72C)E160 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :K 1h72C 159 :L T0547 497 :LFLHDV 1h72C 161 :VLHIPI Number of specific fragments extracted= 2 number of extra gaps= 2 total=76332 # 1u5uA.494.327 read from T0547.t04.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)D494 (1u5uA)P328 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1u5uA)S330 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1u5uA)E335 because P (beta_P) conformation "forbidden" or filtered. T0547 495 :K 1u5uA 329 :A T0547 497 :LFLH 1u5uA 331 :LGLL T0547 502 :V 1u5uA 336 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=76335 # 1wb9A.494.592 read from T0547.t04.many.frag # found chain 1wb9A in template set Warning: unaligning (T0547)K495 (1wb9A)E594 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1wb9A)P600 because P (beta_P) conformation "forbidden" or filtered. T0547 494 :D 1wb9A 593 :N T0547 496 :PLFLH 1wb9A 595 :PFIAN T0547 502 :V 1wb9A 601 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=76338 # 2b5nA.494.276 read from T0547.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)P496 (2b5nA)K665 because E (beta_S) conformation "forbidden" or filtered. T0547 494 :DK 2b5nA 663 :NH T0547 497 :LFLHDV 2b5nA 666 :LVFSNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76340 # 1dzkA.494.33 read from T0547.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)D501 (1dzkA)S41 because Y (epsilon') conformation "forbidden" or filtered. T0547 494 :DKPLFLH 1dzkA 34 :PFQVFMR T0547 502 :V 1dzkA 42 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=76342 # 1n12A.494.89 read from T0547.t04.many.frag # found chain 1n12A in template set T0547 494 :DKPLFLHDV 1n12A 101 :GTPFTPGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=76343 # 2f8aA.494.189 read from T0547.t04.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)P496 (2f8aA)R180 because G (3-10) conformation "forbidden" or filtered. T0547 494 :DK 2f8aA 178 :SR T0547 497 :LFLHDV 2f8aA 181 :FQTIDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=76345 # 1yymG.494.124 read from T0547.t04.many.frag # found chain 1yymG in template set T0547 494 :DKPLFLHDV 1yymG 267 :EEEIVIRSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=76346 # 1ftrA.494.136 read from T0547.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)K495 (1ftrA)D138 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1ftrA)G139 because T (delta_L) conformation "forbidden" or filtered. T0547 494 :D 1ftrA 137 :L T0547 497 :LFLHDV 1ftrA 140 :RKVWKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=76348 2sns expands to /projects/compbio/data/pdb/2sns.pdb.gz 2sns:Warning: there is no chain 2sns will retry with 2snsA # 2sns.494.35 read from T0547.t04.many.frag # adding 2sns to template set # found chain 2sns in template set Warning: unaligning (T0547)P496 (2sns)L38 because L (left) conformation "forbidden" or filtered. T0547 494 :DK 2sns 36 :LL T0547 497 :LFLHDV 2sns 39 :VDTPET Number of specific fragments extracted= 2 number of extra gaps= 1 total=76350 # 1lla.495.253 read from T0547.t04.many.frag # found chain 1lla in template set Warning: unaligning (T0547)K495 because of BadResidue code BAD_PEPTIDE in next template residue (1lla)G255 Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE at template residue (1lla)G255 T0547 497 :LFLHDVD 1lla 256 :LKLRDLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=76351 # 1pg6A.495.98 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)L497 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 495 :KP 1pg6A 92 :TP T0547 498 :FLHDVD 1pg6A 95 :QIVALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=76353 # 1d3yA.495.225 read from T0547.t04.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)K495 (1d3yA)Y294 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1d3yA)D295 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1d3yA)K302 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLHDV 1d3yA 296 :LPTHPL Number of specific fragments extracted= 1 number of extra gaps= 2 total=76354 # 1yu0A.495.95 read from T0547.t04.many.frag # found chain 1yu0A in training set T0547 495 :KPLFLHDVD 1yu0A 96 :TAITMPALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=76355 # 1gycA.495.182 read from T0547.t04.many.frag # found chain 1gycA in template set T0547 495 :KPLFLHDVD 1gycA 183 :AALAVINVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=76356 # 1qazA.495.260 read from T0547.t04.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)P496 (1qazA)G265 because L (left) conformation "forbidden" or filtered. T0547 495 :K 1qazA 264 :Q T0547 497 :LFLHDVD 1qazA 266 :IDLYAYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=76358 # 1w4sA.495.144 read from T0547.t04.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 because of BadResidue code BAD_PEPTIDE in next template residue (1w4sA)F1083 T0547 495 :K 1w4sA 1074 :W T0547 497 :LFLHDV 1w4sA 1076 :MPVSSV Number of specific fragments extracted= 2 number of extra gaps= 2 total=76360 # 1lmiA.495.33 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P496 (1lmiA)T35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L499 because of BadResidue code BAD_PEPTIDE in next template residue (1lmiA)P39 Warning: unaligning (T0547)H500 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)P39 Warning: unaligning (T0547)D501 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)G40 T0547 495 :K 1lmiA 34 :S T0547 497 :LF 1lmiA 36 :AV T0547 502 :VD 1lmiA 41 :YP Number of specific fragments extracted= 3 number of extra gaps= 2 total=76363 # 1l2hA.495.77 read from T0547.t04.many.frag # found chain 1l2hA in template set Warning: unaligning (T0547)P496 (1l2hA)T79 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :K 1l2hA 78 :P T0547 497 :LFLHDVD 1l2hA 80 :LQLESVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=76365 # 2a2cA.495.227 read from T0547.t04.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K495 (2a2cA)S208 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2a2cA)P209 because C (cis) conformation "forbidden" or filtered. T0547 497 :LFLHDVD 2a2cA 210 :LRATDVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=76366 # 1w9zA.495.244 read from T0547.t04.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)K495 (1w9zA)G245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1w9zA)S246 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1w9zA)T251 because Y (epsilon') conformation "forbidden" or filtered. T0547 497 :LFLH 1w9zA 247 :LPLT T0547 502 :VD 1w9zA 252 :IP Number of specific fragments extracted= 2 number of extra gaps= 2 total=76368 # 1at0.495.13 read from T0547.t04.many.frag # found chain 1at0 in template set T0547 495 :KPLFLHDVD 1at0 271 :VRKPLGELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=76369 # 1u5uA.495.328 read from T0547.t04.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)P496 (1u5uA)S330 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1u5uA)G332 because S (epsilon) conformation "forbidden" or filtered. T0547 495 :K 1u5uA 329 :A T0547 497 :L 1u5uA 331 :L T0547 499 :LHDVD 1u5uA 333 :LLEAK Number of specific fragments extracted= 3 number of extra gaps= 2 total=76372 # 1m9zA.495.70 read from T0547.t04.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)P496 (1m9zA)T97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1m9zA)K104 because P (beta_P) conformation "forbidden" or filtered. T0547 495 :K 1m9zA 96 :P T0547 497 :LFLHDV 1m9zA 98 :CIMKEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=76374 # 1r77A.495.80 read from T0547.t04.many.frag # found chain 1r77A in training set Warning: unaligning (T0547)P496 (1r77A)Y341 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :K 1r77A 340 :V T0547 497 :LFLHDVD 1r77A 342 :LPVRTWN Number of specific fragments extracted= 2 number of extra gaps= 1 total=76376 # 1twfC.495.139 read from T0547.t04.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)P496 (1twfC)G141 because S (epsilon) conformation "forbidden" or filtered. T0547 495 :K 1twfC 140 :N T0547 497 :LFLHDVD 1twfC 142 :VLICKLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=76378 # 2msbA.495.67 read from T0547.t04.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)H500 (2msbA)S179 because Y (epsilon') conformation "forbidden" or filtered. T0547 495 :KPLFL 2msbA 174 :GRLTY T0547 501 :DVD 2msbA 180 :NWK Number of specific fragments extracted= 2 number of extra gaps= 1 total=76380 # 2sns.495.36 read from T0547.t04.many.frag # found chain 2sns in template set Warning: unaligning (T0547)P496 (2sns)L38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (2sns)V39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (2sns)K45 because Y (epsilon') conformation "forbidden" or filtered. T0547 495 :K 2sns 37 :L T0547 498 :FLHDV 2sns 40 :DTPET Number of specific fragments extracted= 2 number of extra gaps= 2 total=76382 # 1oewA.495.179 read from T0547.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)P496 (1oewA)S181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1oewA)A186 because P (beta_P) conformation "forbidden" or filtered. T0547 495 :K 1oewA 180 :G T0547 497 :LFLH 1oewA 182 :ITYT T0547 502 :VD 1oewA 187 :VS Number of specific fragments extracted= 3 number of extra gaps= 2 total=76385 # 1vb3A.495.405 read from T0547.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)K495 (1vb3A)L406 because P (beta_P) conformation "forbidden" or filtered. T0547 496 :PLFLHDVD 1vb3A 407 :PLLSHNLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=76386 # 2czrA.495.205 read from T0547.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)K495 (2czrA)G198 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (2czrA)S206 because P (beta_P) conformation "forbidden" or filtered. T0547 496 :PLFLHDV 2czrA 199 :EVPMDKF Number of specific fragments extracted= 1 number of extra gaps= 2 total=76387 # 2bjfA.495.299 read from T0547.t04.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)P496 (2bjfA)A301 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (2bjfA)N308 because N (gamma') conformation "forbidden" or filtered. T0547 495 :K 2bjfA 300 :N T0547 497 :LFLHDV 2bjfA 302 :IDMNKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=76389 2bm5A expands to /projects/compbio/data/pdb/2bm5.pdb.gz 2bm5A:# 2bm5A.495.137 read from T0547.t04.many.frag # adding 2bm5A to template set # found chain 2bm5A in template set Warning: unaligning (T0547)P496 (2bm5A)G136 because T (delta_L) conformation "forbidden" or filtered. T0547 495 :K 2bm5A 135 :T T0547 497 :LFLHDVD 2bm5A 137 :ARLDDAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=76391 # 1euwA.495.15 read from T0547.t04.many.frag # found chain 1euwA in training set Warning: unaligning (T0547)L497 (1euwA)F18 because Y (epsilon') conformation "forbidden" or filtered. T0547 495 :KP 1euwA 16 :KE T0547 498 :FLHDVD 1euwA 19 :PLPTYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=76393 2c9aA expands to /projects/compbio/data/pdb/2c9a.pdb.gz 2c9aA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2c9aA.495.61 read from T0547.t04.many.frag # adding 2c9aA to template set # found chain 2c9aA in template set Warning: unaligning (T0547)P496 (2c9aA)H83 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :K 2c9aA 82 :A T0547 497 :LFLHDVD 2c9aA 84 :LLLPQLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=76395 # 1g6sA.495.298 read from T0547.t04.many.frag # found chain 1g6sA in training set Warning: unaligning (T0547)P496 (1g6sA)E300 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1g6sA)D305 because D (zeta) conformation "forbidden" or filtered. T0547 495 :K 1g6sA 299 :G T0547 497 :LFLH 1g6sA 301 :LNAI T0547 502 :VD 1g6sA 306 :MD Number of specific fragments extracted= 3 number of extra gaps= 2 total=76398 # 1w96A.495.458 read from T0547.t04.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)L497 (1w96A)G473 because S (epsilon) conformation "forbidden" or filtered. T0547 495 :KP 1w96A 471 :SG T0547 498 :FLHDVD 1w96A 474 :TLHELN Number of specific fragments extracted= 2 number of extra gaps= 1 total=76400 # 1wb9A.495.593 read from T0547.t04.many.frag # found chain 1wb9A in template set Warning: unaligning (T0547)K495 (1wb9A)E594 because Y (epsilon') conformation "forbidden" or filtered. T0547 496 :PLFLHDVD 1wb9A 595 :PFIANPLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=76401 # 1yq2A.495.672 read from T0547.t04.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)P496 (1yq2A)T673 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :K 1yq2A 672 :A T0547 497 :LFLHDVD 1yq2A 674 :IALPAMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=76403 # 1h72C.495.154 read from T0547.t04.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)P496 (1h72C)E160 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :K 1h72C 159 :L T0547 497 :LFLHDVD 1h72C 161 :VLHIPID Number of specific fragments extracted= 2 number of extra gaps= 1 total=76405 # 1pg6A.496.99 read from T0547.t04.many.frag # found chain 1pg6A in training set T0547 496 :PLFLHDVDV 1pg6A 93 :PGQIVALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=76406 # 1lla.496.254 read from T0547.t04.many.frag # found chain 1lla in template set Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE at template residue (1lla)G255 T0547 497 :LFLHDVDV 1lla 256 :LKLRDLGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=76407 # 1yu0A.496.96 read from T0547.t04.many.frag # found chain 1yu0A in training set Warning: unaligning (T0547)H500 (1yu0A)P101 because P (beta_P) conformation "forbidden" or filtered. T0547 496 :PLFL 1yu0A 97 :AITM T0547 501 :DVDV 1yu0A 102 :ALTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=76409 # 1r77A.496.81 read from T0547.t04.many.frag # found chain 1r77A in training set Warning: unaligning (T0547)P496 (1r77A)Y341 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1r77A 342 :LPVRTWNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=76410 # 1qazA.496.261 read from T0547.t04.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)P496 (1qazA)G265 because L (left) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1qazA 266 :IDLYAYKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=76411 # 1l2hA.496.78 read from T0547.t04.many.frag # found chain 1l2hA in template set Warning: unaligning (T0547)P496 (1l2hA)T79 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1l2hA 80 :LQLESVDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=76412 # 1d3yA.496.226 read from T0547.t04.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)P496 (1d3yA)D295 because L (left) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1d3yA 296 :LPTHPLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=76413 # 2bjfA.496.300 read from T0547.t04.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)P496 (2bjfA)A301 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 2bjfA 302 :IDMNKENL Number of specific fragments extracted= 1 number of extra gaps= 1 total=76414 # 1u5uA.496.329 read from T0547.t04.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)P496 (1u5uA)S330 because G (3-10) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1u5uA 331 :LGLLEAKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=76415 # 1lmiA.496.34 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P496 (1lmiA)T35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L499 because of BadResidue code BAD_PEPTIDE in next template residue (1lmiA)P39 Warning: unaligning (T0547)H500 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)P39 Warning: unaligning (T0547)D501 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)G40 T0547 497 :LF 1lmiA 36 :AV T0547 502 :VDV 1lmiA 41 :YPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=76417 # 2sns.496.37 read from T0547.t04.many.frag # found chain 2sns in template set Warning: unaligning (T0547)P496 (2sns)L38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (2sns)V39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V504 (2sns)H46 because S (epsilon) conformation "forbidden" or filtered. T0547 498 :FLHDVD 2sns 40 :DTPETK Number of specific fragments extracted= 1 number of extra gaps= 2 total=76418 # 1m9zA.496.71 read from T0547.t04.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)P496 (1m9zA)T97 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1m9zA 98 :CIMKEKKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=76419 # 2a2cA.496.228 read from T0547.t04.many.frag # found chain 2a2cA in training set T0547 496 :PLFLHDVDV 2a2cA 209 :PLRATDVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=76420 # 1w9zA.496.245 read from T0547.t04.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)P496 (1w9zA)S246 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1w9zA)T251 because Y (epsilon') conformation "forbidden" or filtered. T0547 497 :LFLH 1w9zA 247 :LPLT T0547 502 :VDV 1w9zA 252 :IPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=76422 # 1at0.496.14 read from T0547.t04.many.frag # found chain 1at0 in template set T0547 496 :PLFLHDVDV 1at0 272 :RKPLGELSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=76423 # 2c9aA.496.62 read from T0547.t04.many.frag # found chain 2c9aA in template set Warning: unaligning (T0547)P496 (2c9aA)H83 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 2c9aA 84 :LLLPQLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=76424 # 2bm5A.496.138 read from T0547.t04.many.frag # found chain 2bm5A in template set Warning: unaligning (T0547)P496 (2bm5A)G136 because T (delta_L) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 2bm5A 137 :ARLDDADL Number of specific fragments extracted= 1 number of extra gaps= 1 total=76425 # 1gycA.496.183 read from T0547.t04.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)D501 (1gycA)N189 because P (beta_P) conformation "forbidden" or filtered. T0547 496 :PLFLH 1gycA 184 :ALAVI T0547 502 :VDV 1gycA 190 :VQH Number of specific fragments extracted= 2 number of extra gaps= 1 total=76427 # 1oewA.496.180 read from T0547.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)P496 (1oewA)S181 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1oewA 182 :ITYTAVST Number of specific fragments extracted= 1 number of extra gaps= 1 total=76428 # 1w96A.496.459 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 496 :PLFLHDVDV 1w96A 472 :GGTLHELNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=76429 # 1euwA.496.16 read from T0547.t04.many.frag # found chain 1euwA in training set Warning: unaligning (T0547)L497 (1euwA)F18 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1euwA)T22 because E (beta_S) conformation "forbidden" or filtered. T0547 496 :P 1euwA 17 :E T0547 498 :FLH 1euwA 19 :PLP T0547 502 :VDV 1euwA 23 :YAT Number of specific fragments extracted= 3 number of extra gaps= 2 total=76432 # 1pqhA.496.28 read from T0547.t04.many.frag # found chain 1pqhA in training set Warning: unaligning (T0547)P496 (1pqhA)R12 because L (left) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1pqhA 13 :VKVTHADL Number of specific fragments extracted= 1 number of extra gaps= 1 total=76433 # 1w4sA.496.145 read from T0547.t04.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 because of BadResidue code BAD_PEPTIDE in next template residue (1w4sA)F1083 Warning: unaligning (T0547)V504 because of BadResidue code BAD_PEPTIDE at template residue (1w4sA)F1083 T0547 497 :LFLHDV 1w4sA 1076 :MPVSSV Number of specific fragments extracted= 1 number of extra gaps= 2 total=76434 # 1g6sA.496.299 read from T0547.t04.many.frag # found chain 1g6sA in training set Warning: unaligning (T0547)P496 (1g6sA)E300 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1g6sA)D305 because D (zeta) conformation "forbidden" or filtered. T0547 497 :LFLH 1g6sA 301 :LNAI T0547 502 :VDV 1g6sA 306 :MDM Number of specific fragments extracted= 2 number of extra gaps= 2 total=76436 # 1jb7B.496.93 read from T0547.t04.many.frag # found chain 1jb7B in template set Warning: unaligning (T0547)P496 (1jb7B)S94 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1jb7B 95 :LELRRVNS Number of specific fragments extracted= 1 number of extra gaps= 1 total=76437 # 1g8kA.496.671 read from T0547.t04.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)D501 (1g8kA)P677 because P (beta_P) conformation "forbidden" or filtered. T0547 496 :PLFLH 1g8kA 672 :KAHFK T0547 502 :VDV 1g8kA 678 :APW Number of specific fragments extracted= 2 number of extra gaps= 1 total=76439 # 1twfC.496.140 read from T0547.t04.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)P496 (1twfC)G141 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1twfC)C145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1twfC)K146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1twfC)R148 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFL 1twfC 142 :VLI T0547 502 :V 1twfC 147 :L T0547 504 :V 1twfC 149 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=76442 # 1qwoA.496.404 read from T0547.t04.many.frag # found chain 1qwoA in training set Warning: unaligning (T0547)H500 (1qwoA)H411 because E (beta_S) conformation "forbidden" or filtered. T0547 496 :PLFL 1qwoA 407 :VVPL T0547 501 :DVDV 1qwoA 412 :GCDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76444 1k8kE expands to /projects/compbio/data/pdb/1k8k.pdb.gz 1k8kE:# 1k8kE.496.51 read from T0547.t04.many.frag # adding 1k8kE to template set # found chain 1k8kE in template set T0547 496 :PLFLHDVDV 1k8kE 52 :NVFFKNYEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=76445 # 1zr6A.496.366 read from T0547.t04.many.frag # found chain 1zr6A in training set Warning: unaligning (T0547)P496 (1zr6A)N361 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1zr6A)S368 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLHDV 1zr6A 362 :SALAAV T0547 504 :V 1zr6A 369 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=76447 # 1r77A.497.82 read from T0547.t04.many.frag # found chain 1r77A in training set Warning: unaligning (T0547)H500 (1r77A)R345 because Y (epsilon') conformation "forbidden" or filtered. T0547 497 :LFL 1r77A 342 :LPV T0547 501 :DVDVE 1r77A 346 :TWNES Number of specific fragments extracted= 2 number of extra gaps= 1 total=76449 # 1pg6A.497.100 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)L497 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1pg6A)E100 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1pg6A)G102 because Y (epsilon') conformation "forbidden" or filtered. T0547 498 :FLHDV 1pg6A 95 :QIVAL T0547 504 :V 1pg6A 101 :L Number of specific fragments extracted= 2 number of extra gaps= 3 total=76451 # 1qazA.497.262 read from T0547.t04.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)D503 (1qazA)K272 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1qazA)N274 because L (left) conformation "forbidden" or filtered. T0547 497 :LFLHDV 1qazA 266 :IDLYAY T0547 504 :V 1qazA 273 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=76453 # 2bjfA.497.301 read from T0547.t04.many.frag # found chain 2bjfA in training set T0547 497 :LFLHDVDVE 2bjfA 302 :IDMNKENLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=76454 # 1l2hA.497.79 read from T0547.t04.many.frag # found chain 1l2hA in template set T0547 497 :LFLHDVDVE 1l2hA 80 :LQLESVDPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=76455 # 1m9zA.497.72 read from T0547.t04.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)D501 (1m9zA)E102 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLH 1m9zA 98 :CIMK T0547 502 :VDVE 1m9zA 103 :KKKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=76457 # 2sns.497.38 read from T0547.t04.many.frag # found chain 2sns in template set Warning: unaligning (T0547)L497 (2sns)V39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (2sns)K45 because Y (epsilon') conformation "forbidden" or filtered. T0547 498 :FLHDV 2sns 40 :DTPET T0547 504 :VE 2sns 46 :HP Number of specific fragments extracted= 2 number of extra gaps= 2 total=76459 # 1yu0A.497.97 read from T0547.t04.many.frag # found chain 1yu0A in training set Warning: unaligning (T0547)E505 (1yu0A)G106 because L (left) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1yu0A 98 :ITMPALTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=76460 # 1u5uA.497.330 read from T0547.t04.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)F498 (1u5uA)G332 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)V504 (1u5uA)S338 because Y (epsilon') conformation "forbidden" or filtered. T0547 497 :L 1u5uA 331 :L T0547 499 :LHDVD 1u5uA 333 :LLEAK T0547 505 :E 1u5uA 339 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=76463 # 1d3yA.497.227 read from T0547.t04.many.frag # found chain 1d3yA in template set T0547 497 :LFLHDVDVE 1d3yA 296 :LPTHPLKEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=76464 # 1jb7B.497.94 read from T0547.t04.many.frag # found chain 1jb7B in template set T0547 497 :LFLHDVDVE 1jb7B 95 :LELRRVNSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=76465 # 1euwA.497.17 read from T0547.t04.many.frag # found chain 1euwA in training set T0547 497 :LFLHDVDVE 1euwA 18 :FPLPTYATS Number of specific fragments extracted= 1 number of extra gaps= 0 total=76466 # 2biqA.497.124 read from T0547.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)D503 (2biqA)E224 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLHDV 2biqA 218 :VPYEPP T0547 504 :VE 2biqA 225 :VG Number of specific fragments extracted= 2 number of extra gaps= 1 total=76468 # 1oewA.497.181 read from T0547.t04.many.frag # found chain 1oewA in training set T0547 497 :LFLHDVDVE 1oewA 182 :ITYTAVSTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=76469 # 2c9aA.497.63 read from T0547.t04.many.frag # found chain 2c9aA in template set T0547 497 :LFLHDVDVE 2c9aA 84 :LLLPQLKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=76470 # 1twfC.497.141 read from T0547.t04.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)H500 (1twfC)C145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1twfC)K146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1twfC)R148 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFL 1twfC 142 :VLI T0547 502 :V 1twfC 147 :L T0547 504 :VE 1twfC 149 :KG Number of specific fragments extracted= 3 number of extra gaps= 2 total=76473 # 1w96A.497.460 read from T0547.t04.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)D501 (1w96A)E477 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLH 1w96A 473 :GTLH T0547 502 :VDVE 1w96A 478 :LNFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=76475 # 1yymG.497.127 read from T0547.t04.many.frag # found chain 1yymG in template set T0547 497 :LFLHDVDVE 1yymG 270 :IVIRSENFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=76476 # 1zr6A.497.367 read from T0547.t04.many.frag # found chain 1zr6A in training set T0547 497 :LFLHDVDVE 1zr6A 362 :SALAAVSND Number of specific fragments extracted= 1 number of extra gaps= 0 total=76477 # 1a8d.497.208 read from T0547.t04.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)D501 (1a8d)R213 because L (left) conformation "forbidden" or filtered. T0547 497 :LFLH 1a8d 209 :LKLD T0547 502 :VDVE 1a8d 214 :CNNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=76479 # 1jmuB.497.278 read from T0547.t04.many.frag # found chain 1jmuB in template set Warning: unaligning (T0547)L497 (1jmuB)Y321 because Y (epsilon') conformation "forbidden" or filtered. T0547 498 :FLHDVDVE 1jmuB 322 :NVRTLKID Number of specific fragments extracted= 1 number of extra gaps= 1 total=76480 # 1odhA.497.58 read from T0547.t04.many.frag # found chain 1odhA in template set Warning: unaligning (T0547)D501 (1odhA)N63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V504 (1odhA)N66 because G (3-10) conformation "forbidden" or filtered. T0547 497 :LFLH 1odhA 59 :WAMR T0547 502 :VD 1odhA 64 :TN T0547 505 :E 1odhA 67 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=76483 # 1w9zA.497.246 read from T0547.t04.many.frag # found chain 1w9zA in template set T0547 497 :LFLHDVDVE 1w9zA 247 :LPLTTIPAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=76484 # 1at0.497.15 read from T0547.t04.many.frag # found chain 1at0 in template set T0547 497 :LFLHDVDVE 1at0 273 :KPLGELSIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=76485 # 1lla.497.255 read from T0547.t04.many.frag # found chain 1lla in template set T0547 497 :LFLHDVDVE 1lla 256 :LKLRDLGDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=76486 # 2bm5A.497.139 read from T0547.t04.many.frag # found chain 2bm5A in template set T0547 497 :LFLHDVDVE 2bm5A 137 :ARLDDADLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=76487 # 1qwoA.497.405 read from T0547.t04.many.frag # found chain 1qwoA in training set Warning: unaligning (T0547)D501 (1qwoA)G412 because T (delta_L) conformation "forbidden" or filtered. T0547 497 :LFLH 1qwoA 408 :VPLH T0547 502 :VDVE 1qwoA 413 :CDVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=76489 # 1g8kA.497.672 read from T0547.t04.many.frag # found chain 1g8kA in training set T0547 497 :LFLHDVDVE 1g8kA 673 :AHFKPAPWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=76490 # 1lmiA.497.35 read from T0547.t04.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)L499 because of BadResidue code BAD_PEPTIDE in next template residue (1lmiA)P39 Warning: unaligning (T0547)H500 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)P39 Warning: unaligning (T0547)D501 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)G40 T0547 497 :LF 1lmiA 36 :AV T0547 502 :VDVE 1lmiA 41 :YPVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=76492 # 1qg3A.497.157 read from T0547.t04.many.frag # found chain 1qg3A in template set Warning: unaligning (T0547)D501 (1qg3A)N1287 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1qg3A)S1291 because L (left) conformation "forbidden" or filtered. T0547 497 :LFLH 1qg3A 1283 :LLIE T0547 502 :VDV 1qg3A 1288 :LRE Number of specific fragments extracted= 2 number of extra gaps= 2 total=76494 # 1r77A.498.83 read from T0547.t04.many.frag # found chain 1r77A in training set T0547 498 :FLHDVDVEK 1r77A 343 :PVRTWNEST Number of specific fragments extracted= 1 number of extra gaps= 0 total=76495 # 1pg6A.498.101 read from T0547.t04.many.frag # found chain 1pg6A in training set T0547 498 :FLHDVDVEK 1pg6A 95 :QIVALELGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=76496 # 1l2hA.498.80 read from T0547.t04.many.frag # found chain 1l2hA in template set T0547 498 :FLHDVDVEK 1l2hA 81 :QLESVDPKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=76497 # 1w96A.498.461 read from T0547.t04.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)K506 (1w96A)S482 because G (3-10) conformation "forbidden" or filtered. T0547 498 :FLHDVDVE 1w96A 474 :TLHELNFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=76498 # 1m9zA.498.73 read from T0547.t04.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)D501 (1m9zA)E102 because P (beta_P) conformation "forbidden" or filtered. T0547 498 :FLH 1m9zA 99 :IMK T0547 502 :VDVEK 1m9zA 103 :KKKPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=76500 # 1euwA.498.18 read from T0547.t04.many.frag # found chain 1euwA in training set Warning: unaligning (T0547)K506 (1euwA)G27 because G (3-10) conformation "forbidden" or filtered. T0547 498 :FLHDVDVE 1euwA 19 :PLPTYATS Number of specific fragments extracted= 1 number of extra gaps= 1 total=76501 # 1qazA.498.263 read from T0547.t04.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)E505 (1qazA)N274 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1qazA)G275 because L (left) conformation "forbidden" or filtered. T0547 498 :FLHDVDV 1qazA 267 :DLYAYKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=76502 # 1r17A.498.182 read from T0547.t04.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)D503 (1r17A)D443 because D (zeta) conformation "forbidden" or filtered. T0547 498 :FLHDV 1r17A 438 :MFTNI T0547 504 :VEK 1r17A 444 :TKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=76504 # 1yymG.498.128 read from T0547.t04.many.frag # found chain 1yymG in template set T0547 498 :FLHDVDVEK 1yymG 271 :VIRSENFTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=76505 # 1oewA.498.182 read from T0547.t04.many.frag # found chain 1oewA in training set T0547 498 :FLHDVDVEK 1oewA 183 :TYTAVSTKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=76506 # 1a8d.498.209 read from T0547.t04.many.frag # found chain 1a8d in training set T0547 498 :FLHDVDVEK 1a8d 210 :KLDRCNNNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=76507 # 1jb7B.498.95 read from T0547.t04.many.frag # found chain 1jb7B in template set T0547 498 :FLHDVDVEK 1jb7B 96 :ELRRVNSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=76508 # 1n12A.498.93 read from T0547.t04.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)D503 (1n12A)T110 because E (beta_S) conformation "forbidden" or filtered. T0547 498 :FLHDV 1n12A 105 :TPGKI T0547 504 :VEK 1n12A 111 :GNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=76510 # 2a6zA.498.181 read from T0547.t04.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)L499 (2a6zA)T188 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (2a6zA)R192 because D (zeta) conformation "forbidden" or filtered. T0547 498 :F 2a6zA 187 :Q T0547 500 :HDV 2a6zA 189 :RKV T0547 504 :VEK 2a6zA 193 :FPS Number of specific fragments extracted= 3 number of extra gaps= 2 total=76513 # 1o0sA.498.460 read from T0547.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)H500 (1o0sA)P463 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1o0sA)N464 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1o0sA)N468 because L (left) conformation "forbidden" or filtered. T0547 498 :FL 1o0sA 461 :PF T0547 502 :VDV 1o0sA 465 :FEL T0547 506 :K 1o0sA 469 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=76516 # 2sns.498.39 read from T0547.t04.many.frag # found chain 2sns in template set Warning: unaligning (T0547)V502 (2sns)T44 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V504 (2sns)H46 because S (epsilon) conformation "forbidden" or filtered. T0547 498 :FLHD 2sns 40 :DTPE T0547 503 :D 2sns 45 :K T0547 505 :EK 2sns 47 :PK Number of specific fragments extracted= 3 number of extra gaps= 2 total=76519 # 2bjfA.498.302 read from T0547.t04.many.frag # found chain 2bjfA in training set T0547 498 :FLHDVDVEK 2bjfA 303 :DMNKENLDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=76520 # 2biqA.498.125 read from T0547.t04.many.frag # found chain 2biqA in template set T0547 498 :FLHDVDVEK 2biqA 219 :PYEPPEVGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=76521 # 2c9aA.498.64 read from T0547.t04.many.frag # found chain 2c9aA in template set T0547 498 :FLHDVDVEK 2c9aA 85 :LLPQLKEND Number of specific fragments extracted= 1 number of extra gaps= 0 total=76522 # 1lm8V.498.82 read from T0547.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)E505 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. T0547 498 :FLHDVDV 1lm8V 136 :FVPSLNV T0547 506 :K 1lm8V 144 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=76524 # 1odhA.498.59 read from T0547.t04.many.frag # found chain 1odhA in template set Warning: unaligning (T0547)D501 (1odhA)N63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V504 (1odhA)N66 because G (3-10) conformation "forbidden" or filtered. T0547 498 :FLH 1odhA 60 :AMR T0547 502 :VD 1odhA 64 :TN T0547 505 :EK 1odhA 67 :HN Number of specific fragments extracted= 3 number of extra gaps= 2 total=76527 # 1twfC.498.142 read from T0547.t04.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)H500 (1twfC)C145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1twfC)K146 because E (beta_S) conformation "forbidden" or filtered. T0547 498 :FL 1twfC 143 :LI T0547 502 :VDVEK 1twfC 147 :LRKGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=76529 # 1u5uA.498.331 read from T0547.t04.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)F498 (1u5uA)G332 because S (epsilon) conformation "forbidden" or filtered. T0547 499 :LHDVDVEK 1u5uA 333 :LLEAKSPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=76530 # 1txkA.498.170 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 498 :FLHDVDVEK 1txkA 192 :WIERPKPTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=76531 # 1jmuB.498.279 read from T0547.t04.many.frag # found chain 1jmuB in template set Warning: unaligning (T0547)D503 (1jmuB)K327 because P (beta_P) conformation "forbidden" or filtered. T0547 498 :FLHDV 1jmuB 322 :NVRTL T0547 504 :VEK 1jmuB 328 :IDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=76533 # 1a12A.498.276 read from T0547.t04.many.frag # found chain 1a12A in training set T0547 498 :FLHDVDVEK 1a12A 285 :NLTSFKNST Number of specific fragments extracted= 1 number of extra gaps= 0 total=76534 # 1zr6A.498.368 read from T0547.t04.many.frag # found chain 1zr6A in training set T0547 498 :FLHDVDVEK 1zr6A 363 :ALAAVSNDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=76535 1xovA expands to /projects/compbio/data/pdb/1xov.pdb.gz 1xovA:# 1xovA.498.252 read from T0547.t04.many.frag # adding 1xovA to template set # found chain 1xovA in template set Warning: unaligning (T0547)L499 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1xovA)N243 Warning: unaligning (T0547)H500 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xovA)N243 Warning: unaligning (T0547)D501 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1xovA)G244 T0547 498 :F 1xovA 241 :I T0547 502 :VDVEK 1xovA 245 :KKDAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=76537 # 2brfA.498.19 read from T0547.t04.many.frag # found chain 2brfA in training set Warning: unaligning (T0547)D501 (2brfA)F23 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (2brfA)D27 because L (left) conformation "forbidden" or filtered. T0547 498 :FLH 2brfA 20 :PPI T0547 502 :VDV 2brfA 24 :LPS T0547 506 :K 2brfA 28 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=76540 # 1khxA.498.71 read from T0547.t04.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)D503 (1khxA)S317 because P (beta_P) conformation "forbidden" or filtered. T0547 498 :FLHDV 1khxA 312 :CLGLL T0547 504 :VEK 1khxA 318 :NVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=76542 # 1r77A.499.84 read from T0547.t04.many.frag # found chain 1r77A in training set Warning: unaligning (T0547)E507 (1r77A)G352 because T (delta_L) conformation "forbidden" or filtered. T0547 499 :LHDVDVEK 1r77A 344 :VRTWNEST Number of specific fragments extracted= 1 number of extra gaps= 1 total=76543 # 1w96A.499.462 read from T0547.t04.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)D501 (1w96A)E477 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1w96A)N479 because N (gamma') conformation "forbidden" or filtered. T0547 499 :LH 1w96A 475 :LH T0547 502 :V 1w96A 478 :L T0547 504 :VEKE 1w96A 480 :FRSS Number of specific fragments extracted= 3 number of extra gaps= 2 total=76546 # 1r17A.499.183 read from T0547.t04.many.frag # found chain 1r17A in template set T0547 499 :LHDVDVEKE 1r17A 439 :FTNIDTKNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=76547 # 1pg6A.499.102 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)E505 (1pg6A)G102 because Y (epsilon') conformation "forbidden" or filtered. T0547 499 :LHDVDV 1pg6A 96 :IVALEL T0547 506 :KE 1pg6A 103 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=76549 # 1n12A.499.94 read from T0547.t04.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)V504 (1n12A)G111 because S (epsilon) conformation "forbidden" or filtered. T0547 499 :LHDVD 1n12A 106 :PGKIT T0547 505 :EKE 1n12A 112 :NNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=76551 # 1l2hA.499.81 read from T0547.t04.many.frag # found chain 1l2hA in template set Warning: unaligning (T0547)D501 (1l2hA)S84 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :LH 1l2hA 82 :LE T0547 502 :VDVEKE 1l2hA 85 :VDPKNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=76553 # 1euwA.499.19 read from T0547.t04.many.frag # found chain 1euwA in training set T0547 499 :LHDVDVEKE 1euwA 20 :LPTYATSGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=76554 # 1yymG.499.129 read from T0547.t04.many.frag # found chain 1yymG in template set Warning: unaligning (T0547)D501 (1yymG)S274 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1yymG)N276 because D (zeta) conformation "forbidden" or filtered. T0547 499 :LH 1yymG 272 :IR T0547 502 :V 1yymG 275 :E T0547 504 :VEKE 1yymG 277 :FTNN Number of specific fragments extracted= 3 number of extra gaps= 2 total=76557 # 1o0sA.499.461 read from T0547.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)D503 (1o0sA)E466 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1o0sA)N468 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1o0sA)G469 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1o0sA)H470 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :LHDV 1o0sA 462 :FPNF T0547 504 :V 1o0sA 467 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=76559 # 1m9zA.499.74 read from T0547.t04.many.frag # found chain 1m9zA in training set T0547 499 :LHDVDVEKE 1m9zA 100 :MKEKKKPGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=76560 # 1a8d.499.210 read from T0547.t04.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)D501 (1a8d)R213 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1a8d)Q219 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :LH 1a8d 211 :LD T0547 502 :VDVEK 1a8d 214 :CNNNN Number of specific fragments extracted= 2 number of extra gaps= 2 total=76562 # 2a6zA.499.182 read from T0547.t04.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)L499 (2a6zA)T188 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (2a6zA)R192 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (2a6zA)G196 because Y (epsilon') conformation "forbidden" or filtered. T0547 500 :HDV 2a6zA 189 :RKV T0547 504 :VEK 2a6zA 193 :FPS Number of specific fragments extracted= 2 number of extra gaps= 3 total=76564 # 1qazA.499.264 read from T0547.t04.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)E505 (1qazA)N274 because L (left) conformation "forbidden" or filtered. T0547 499 :LHDVDV 1qazA 268 :LYAYKE T0547 506 :KE 1qazA 275 :GR Number of specific fragments extracted= 2 number of extra gaps= 1 total=76566 # 1oewA.499.183 read from T0547.t04.many.frag # found chain 1oewA in training set T0547 499 :LHDVDVEKE 1oewA 184 :YTAVSTKQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=76567 # 2brfA.499.20 read from T0547.t04.many.frag # found chain 2brfA in training set Warning: unaligning (T0547)E505 (2brfA)D27 because L (left) conformation "forbidden" or filtered. T0547 499 :LHDVDV 2brfA 21 :PIFLPS T0547 506 :KE 2brfA 28 :GQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=76569 # 1h6lA.499.75 read from T0547.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0547)K506 (1h6lA)G111 because T (delta_L) conformation "forbidden" or filtered. T0547 499 :LHDVDVE 1h6lA 104 :RYDFPLN T0547 507 :E 1h6lA 112 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=76571 # 1jb7B.499.96 read from T0547.t04.many.frag # found chain 1jb7B in template set T0547 499 :LHDVDVEKE 1jb7B 97 :LRRVNSAEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=76572 # 1lm8V.499.83 read from T0547.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)E505 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1lm8V)G144 because L (left) conformation "forbidden" or filtered. T0547 499 :LHDVDV 1lm8V 137 :VPSLNV T0547 507 :E 1lm8V 145 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=76574 # 1odhA.499.60 read from T0547.t04.many.frag # found chain 1odhA in template set Warning: unaligning (T0547)E505 (1odhA)H67 because L (left) conformation "forbidden" or filtered. T0547 499 :LHDVDV 1odhA 61 :MRNTNN T0547 506 :KE 1odhA 68 :NS Number of specific fragments extracted= 2 number of extra gaps= 1 total=76576 # 1txkA.499.171 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 499 :LHDVDVEKE 1txkA 193 :IERPKPTDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=76577 # 1q79A.499.422 read from T0547.t04.many.frag # found chain 1q79A in template set Warning: unaligning (T0547)D501 (1q79A)K425 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V502 (1q79A)E426 because G (3-10) conformation "forbidden" or filtered. T0547 499 :LH 1q79A 423 :AP T0547 503 :DVEKE 1q79A 427 :NPDKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=76579 # 1uteA.499.118 read from T0547.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)K506 (1uteA)R126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1uteA)S127 because Y (epsilon') conformation "forbidden" or filtered. T0547 499 :LHDVDVE 1uteA 119 :RLRFKIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=76580 # 1ln1A.499.119 read from T0547.t04.many.frag # found chain 1ln1A in template set Warning: unaligning (T0547)K506 (1ln1A)G127 because T (delta_L) conformation "forbidden" or filtered. T0547 499 :LHDVDVE 1ln1A 120 :RRDLDME T0547 507 :E 1ln1A 128 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=76582 1ddlA expands to /projects/compbio/data/pdb/1ddl.pdb.gz 1ddlA:Skipped atom 254, because occupancy 0.470 <= existing 0.530 in 1ddlA Skipped atom 256, because occupancy 0.470 <= existing 0.530 in 1ddlA Skipped atom 258, because occupancy 0.470 <= existing 0.530 in 1ddlA Skipped atom 260, because occupancy 0.470 <= existing 0.530 in 1ddlA Skipped atom 262, because occupancy 0.470 <= existing 0.530 in 1ddlA Skipped atom 264, because occupancy 0.470 <= existing 0.530 in 1ddlA Skipped atom 606, because occupancy 0.500 <= existing 0.500 in 1ddlA Skipped atom 608, because occupancy 0.500 <= existing 0.500 in 1ddlA Skipped atom 737, because occupancy 0.360 <= existing 0.640 in 1ddlA Skipped atom 739, because occupancy 0.360 <= existing 0.640 in 1ddlA Skipped atom 741, because occupancy 0.360 <= existing 0.640 in 1ddlA Skipped atom 743, because occupancy 0.360 <= existing 0.640 in 1ddlA Skipped atom 745, because occupancy 0.360 <= existing 0.640 in 1ddlA Skipped atom 747, because occupancy 0.360 <= existing 0.640 in 1ddlA Skipped atom 1596, because occupancy 0.500 <= existing 0.500 in 1ddlA Skipped atom 1598, because occupancy 0.500 <= existing 0.500 in 1ddlA Skipped atom 1600, because occupancy 0.500 <= existing 0.500 in 1ddlA Skipped atom 1602, because occupancy 0.500 <= existing 0.500 in 1ddlA Skipped atom 1604, because occupancy 0.500 <= existing 0.500 in 1ddlA Skipped atom 1606, because occupancy 0.500 <= existing 0.500 in 1ddlA Skipped atom 1608, because occupancy 0.500 <= existing 0.500 in 1ddlA Skipped atom 1610, because occupancy 0.500 <= existing 0.500 in 1ddlA Skipped atom 1612, because occupancy 0.500 <= existing 0.500 in 1ddlA Skipped atom 1614, because occupancy 0.500 <= existing 0.500 in 1ddlA Skipped atom 1616, because occupancy 0.500 <= existing 0.500 in 1ddlA Skipped atom 1618, because occupancy 0.500 <= existing 0.500 in 1ddlA Skipped atom 1620, because occupancy 0.500 <= existing 0.500 in 1ddlA # 1ddlA.499.128 read from T0547.t04.many.frag # adding 1ddlA to template set # found chain 1ddlA in template set T0547 499 :LHDVDVEKE 1ddlA 129 :DVEANLTNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=76583 # 2biqA.499.126 read from T0547.t04.many.frag # found chain 2biqA in template set T0547 499 :LHDVDVEKE 2biqA 220 :YEPPEVGSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=76584 # 2sns.499.40 read from T0547.t04.many.frag # found chain 2sns in template set Warning: unaligning (T0547)V504 (2sns)H46 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (2sns)K49 because Y (epsilon') conformation "forbidden" or filtered. T0547 499 :LHDVD 2sns 41 :TPETK T0547 505 :EK 2sns 47 :PK Number of specific fragments extracted= 2 number of extra gaps= 2 total=76586 # 1r6fA.499.198 read from T0547.t04.many.frag # found chain 1r6fA in template set Warning: unaligning (T0547)D501 (1r6fA)T223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1r6fA)D227 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :LH 1r6fA 221 :QT T0547 502 :VDV 1r6fA 224 :IQV T0547 506 :KE 1r6fA 228 :GS Number of specific fragments extracted= 3 number of extra gaps= 2 total=76589 # 1twfC.499.143 read from T0547.t04.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)H500 (1twfC)C145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1twfC)R148 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1twfC)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 499 :L 1twfC 144 :I T0547 501 :DV 1twfC 146 :KL T0547 504 :V 1twfC 149 :K T0547 506 :KE 1twfC 151 :QE Number of specific fragments extracted= 4 number of extra gaps= 3 total=76593 # 1u5uA.499.332 read from T0547.t04.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)H500 (1u5uA)L334 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :L 1u5uA 333 :L T0547 501 :DVDVEKE 1u5uA 335 :EAKSPED Number of specific fragments extracted= 2 number of extra gaps= 1 total=76595 # 1jmuB.499.280 read from T0547.t04.many.frag # found chain 1jmuB in template set Warning: unaligning (T0547)D503 (1jmuB)K327 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :LHDV 1jmuB 323 :VRTL T0547 504 :VEKE 1jmuB 328 :IDEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=76597 # 1r17A.500.184 read from T0547.t04.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)D501 (1r17A)N441 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1r17A)H447 because L (left) conformation "forbidden" or filtered. T0547 500 :H 1r17A 440 :T T0547 502 :VDVEK 1r17A 442 :IDTKN T0547 508 :N 1r17A 448 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=76600 # 1o0sA.500.462 read from T0547.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)E505 (1o0sA)N468 because L (left) conformation "forbidden" or filtered. T0547 500 :HDVDV 1o0sA 463 :PNFEL T0547 506 :KEN 1o0sA 469 :GHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=76602 # 1w96A.500.463 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 500 :HDVDVEKEN 1w96A 476 :HELNFRSSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=76603 # 1n12A.500.95 read from T0547.t04.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)D503 (1n12A)T110 because E (beta_S) conformation "forbidden" or filtered. T0547 500 :HDV 1n12A 107 :GKI T0547 504 :VEKEN 1n12A 111 :GNNAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=76605 # 1r77A.500.85 read from T0547.t04.many.frag # found chain 1r77A in training set Warning: unaligning (T0547)H500 (1r77A)R345 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1r77A)G352 because T (delta_L) conformation "forbidden" or filtered. T0547 501 :DVDVEK 1r77A 346 :TWNEST T0547 508 :N 1r77A 353 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=76607 # 2a6zA.500.183 read from T0547.t04.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)E507 (2a6zA)G196 because Y (epsilon') conformation "forbidden" or filtered. T0547 500 :HDVDVEK 2a6zA 189 :RKVRFPS T0547 508 :N 2a6zA 197 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=76609 # 1h6lA.500.76 read from T0547.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0547)E505 (1h6lA)N110 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1h6lA)K112 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDVDV 1h6lA 105 :YDFPL T0547 506 :K 1h6lA 111 :G T0547 508 :N 1h6lA 113 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=76612 # 1pg6A.500.103 read from T0547.t04.many.frag # found chain 1pg6A in training set T0547 500 :HDVDVEKEN 1pg6A 97 :VALELGEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=76613 # 1uteA.500.119 read from T0547.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)D501 (1uteA)R121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1uteA)K123 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1uteA)R126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1uteA)S127 because Y (epsilon') conformation "forbidden" or filtered. T0547 500 :H 1uteA 120 :L T0547 502 :V 1uteA 122 :F T0547 504 :VE 1uteA 124 :IP T0547 508 :N 1uteA 128 :N Number of specific fragments extracted= 4 number of extra gaps= 3 total=76617 # 1a8d.500.211 read from T0547.t04.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)D501 (1a8d)R213 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1a8d)Y220 because Y (epsilon') conformation "forbidden" or filtered. T0547 500 :H 1a8d 212 :D T0547 502 :VDVEKE 1a8d 214 :CNNNNQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=76619 # 1euwA.500.20 read from T0547.t04.many.frag # found chain 1euwA in training set T0547 500 :HDVDVEKEN 1euwA 21 :PTYATSGSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=76620 # 1ddlA.500.129 read from T0547.t04.many.frag # found chain 1ddlA in template set Warning: unaligning (T0547)D501 (1ddlA)E131 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :H 1ddlA 130 :V T0547 502 :VDVEKEN 1ddlA 132 :ANLTNLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=76622 # 2brfA.500.21 read from T0547.t04.many.frag # found chain 2brfA in training set Warning: unaligning (T0547)D501 (2brfA)F23 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (2brfA)D27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (2brfA)G28 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (2brfA)Q29 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :H 2brfA 22 :I T0547 502 :VDV 2brfA 24 :LPS T0547 508 :N 2brfA 30 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=76625 # 1uc2A.500.334 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)D503 (1uc2A)E338 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1uc2A)D340 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1uc2A)G341 because T (delta_L) conformation "forbidden" or filtered. T0547 500 :HDV 1uc2A 335 :EEH T0547 504 :V 1uc2A 339 :V T0547 507 :EN 1uc2A 342 :KR Number of specific fragments extracted= 3 number of extra gaps= 2 total=76628 # 1l2hA.500.82 read from T0547.t04.many.frag # found chain 1l2hA in template set Warning: unaligning (T0547)N508 (1l2hA)P91 because C (cis) conformation "forbidden" or filtered. T0547 500 :HDVDVEKE 1l2hA 83 :ESVDPKNY Number of specific fragments extracted= 1 number of extra gaps= 1 total=76629 # 1yymG.500.130 read from T0547.t04.many.frag # found chain 1yymG in template set Warning: unaligning (T0547)N508 (1yymG)A281 because G (3-10) conformation "forbidden" or filtered. T0547 500 :HDVDVEKE 1yymG 273 :RSENFTNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=76630 # 1m9zA.500.75 read from T0547.t04.many.frag # found chain 1m9zA in training set T0547 500 :HDVDVEKEN 1m9zA 101 :KEKKKPGET Number of specific fragments extracted= 1 number of extra gaps= 0 total=76631 # 1lm8V.500.84 read from T0547.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)D503 (1lm8V)N141 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1lm8V)Q145 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDV 1lm8V 138 :PSL T0547 504 :VEK 1lm8V 142 :VDG T0547 508 :N 1lm8V 146 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=76634 # 1oewA.500.184 read from T0547.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)D503 (1oewA)S188 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1oewA)G192 because T (delta_L) conformation "forbidden" or filtered. T0547 500 :HDV 1oewA 185 :TAV T0547 504 :VEK 1oewA 189 :TKQ T0547 508 :N 1oewA 193 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=76637 # 1ln1A.500.120 read from T0547.t04.many.frag # found chain 1ln1A in template set Warning: unaligning (T0547)K506 (1ln1A)G127 because T (delta_L) conformation "forbidden" or filtered. T0547 500 :HDVDVE 1ln1A 121 :RDLDME T0547 507 :EN 1ln1A 128 :RK Number of specific fragments extracted= 2 number of extra gaps= 1 total=76639 # 1r6fA.500.199 read from T0547.t04.many.frag # found chain 1r6fA in template set Warning: unaligning (T0547)N508 (1r6fA)E230 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDVDVEKE 1r6fA 222 :TTIQVDGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=76640 # 1odhA.500.61 read from T0547.t04.many.frag # found chain 1odhA in template set Warning: unaligning (T0547)D501 (1odhA)N63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1odhA)H67 because L (left) conformation "forbidden" or filtered. T0547 500 :H 1odhA 62 :R T0547 502 :VDV 1odhA 64 :TNN T0547 506 :KEN 1odhA 68 :NSR Number of specific fragments extracted= 3 number of extra gaps= 2 total=76643 # 1qazA.500.265 read from T0547.t04.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)K506 (1qazA)G275 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1qazA)D277 because Y (epsilon') conformation "forbidden" or filtered. T0547 500 :HDVDVE 1qazA 269 :YAYKEN T0547 507 :E 1qazA 276 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=76645 # 1q79A.500.423 read from T0547.t04.many.frag # found chain 1q79A in template set Warning: unaligning (T0547)E507 (1q79A)E431 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDVDVEK 1q79A 424 :PKENPDK T0547 508 :N 1q79A 432 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=76647 # 1jmuB.500.281 read from T0547.t04.many.frag # found chain 1jmuB in template set Warning: unaligning (T0547)D503 (1jmuB)K327 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDV 1jmuB 324 :RTL T0547 504 :VEKEN 1jmuB 328 :IDEAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=76649 # 1txkA.500.172 read from T0547.t04.many.frag # found chain 1txkA in template set Warning: unaligning (T0547)H500 (1txkA)E194 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1txkA)D200 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DVDVE 1txkA 195 :RPKPT T0547 507 :EN 1txkA 201 :KR Number of specific fragments extracted= 2 number of extra gaps= 2 total=76651 # 2biqA.500.127 read from T0547.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)E505 (2biqA)G226 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2biqA)C229 because Y (epsilon') conformation "forbidden" or filtered. T0547 500 :HDVDV 2biqA 221 :EPPEV T0547 506 :KE 2biqA 227 :SD Number of specific fragments extracted= 2 number of extra gaps= 2 total=76653 # 1jb7B.500.97 read from T0547.t04.many.frag # found chain 1jb7B in template set Warning: unaligning (T0547)D503 (1jb7B)N101 because N (gamma') conformation "forbidden" or filtered. T0547 500 :HDV 1jb7B 98 :RRV T0547 504 :VEKEN 1jb7B 102 :SAEVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=76655 # 1gycA.500.187 read from T0547.t04.many.frag # found chain 1gycA in template set T0547 500 :HDVDVEKEN 1gycA 188 :INVQHGKRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=76656 # 2bwrA.500.219 read from T0547.t04.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)D503 (2bwrA)T223 because E (beta_S) conformation "forbidden" or filtered. T0547 500 :HDV 2bwrA 220 :GGW T0547 504 :VEKEN 2bwrA 224 :ISAHP Number of specific fragments extracted= 2 number of extra gaps= 1 total=76658 # 2a6zA.501.184 read from T0547.t04.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)D503 (2a6zA)R192 because D (zeta) conformation "forbidden" or filtered. T0547 501 :DV 2a6zA 190 :KV T0547 504 :VEKENY 2a6zA 193 :FPSGSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=76660 # 1h6lA.501.77 read from T0547.t04.many.frag # found chain 1h6lA in training set T0547 501 :DVDVEKENY 1h6lA 106 :DFPLNGKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=76661 # 1r17A.501.185 read from T0547.t04.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)D501 (1r17A)N441 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1r17A)H447 because L (left) conformation "forbidden" or filtered. T0547 502 :VDVEK 1r17A 442 :IDTKN T0547 508 :NY 1r17A 448 :TV Number of specific fragments extracted= 2 number of extra gaps= 2 total=76663 # 1o0sA.501.463 read from T0547.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)D503 (1o0sA)E466 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1o0sA)N468 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1o0sA)G469 because T (delta_L) conformation "forbidden" or filtered. T0547 501 :DV 1o0sA 464 :NF T0547 504 :V 1o0sA 467 :L T0547 507 :ENY 1o0sA 470 :HTY Number of specific fragments extracted= 3 number of extra gaps= 2 total=76666 # 1n12A.501.96 read from T0547.t04.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)D501 (1n12A)K108 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1n12A)T110 because E (beta_S) conformation "forbidden" or filtered. T0547 502 :V 1n12A 109 :I T0547 504 :VEKENY 1n12A 111 :GNNADK Number of specific fragments extracted= 2 number of extra gaps= 2 total=76668 # 1w96A.501.464 read from T0547.t04.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)D503 (1w96A)N479 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1w96A)S482 because G (3-10) conformation "forbidden" or filtered. T0547 501 :DV 1w96A 477 :EL T0547 504 :VE 1w96A 480 :FR T0547 507 :ENY 1w96A 483 :SSN Number of specific fragments extracted= 3 number of extra gaps= 2 total=76671 # 1uteA.501.120 read from T0547.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)D501 (1uteA)R121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1uteA)R126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1uteA)S127 because Y (epsilon') conformation "forbidden" or filtered. T0547 502 :VDVE 1uteA 122 :FKIP T0547 508 :NY 1uteA 128 :NV Number of specific fragments extracted= 2 number of extra gaps= 2 total=76673 # 1pg6A.501.104 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)E505 (1pg6A)G102 because Y (epsilon') conformation "forbidden" or filtered. T0547 501 :DVDV 1pg6A 98 :ALEL T0547 506 :KENY 1pg6A 103 :EKQY Number of specific fragments extracted= 2 number of extra gaps= 1 total=76675 # 1uc2A.501.335 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)D501 (1uc2A)E336 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1uc2A)R343 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :VDVEKE 1uc2A 337 :HEVDGK T0547 509 :Y 1uc2A 344 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=76677 # 1a8d.501.212 read from T0547.t04.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)D501 (1a8d)R213 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1a8d)Y220 because Y (epsilon') conformation "forbidden" or filtered. T0547 502 :VDVEKE 1a8d 214 :CNNNNQ T0547 509 :Y 1a8d 221 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=76679 # 1ln1A.501.121 read from T0547.t04.many.frag # found chain 1ln1A in template set T0547 501 :DVDVEKENY 1ln1A 122 :DLDMEGRKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=76680 # 1r77A.501.86 read from T0547.t04.many.frag # found chain 1r77A in training set Warning: unaligning (T0547)E507 (1r77A)G352 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1r77A)E353 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DVDVEK 1r77A 346 :TWNEST T0547 509 :Y 1r77A 354 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=76682 # 1ddlA.501.130 read from T0547.t04.many.frag # found chain 1ddlA in template set Warning: unaligning (T0547)D501 (1ddlA)E131 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1ddlA)N136 because G (3-10) conformation "forbidden" or filtered. T0547 502 :VDVE 1ddlA 132 :ANLT T0547 507 :ENY 1ddlA 137 :LNP Number of specific fragments extracted= 2 number of extra gaps= 2 total=76684 # 1q79A.501.424 read from T0547.t04.many.frag # found chain 1q79A in template set Warning: unaligning (T0547)D503 (1q79A)N427 because D (zeta) conformation "forbidden" or filtered. T0547 501 :DV 1q79A 425 :KE T0547 504 :VEKENY 1q79A 428 :PDKEEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=76686 # 1lm8V.501.85 read from T0547.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)E505 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1lm8V)G144 because L (left) conformation "forbidden" or filtered. T0547 501 :DVDV 1lm8V 139 :SLNV T0547 507 :ENY 1lm8V 145 :QPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=76688 # 1jmuB.501.282 read from T0547.t04.many.frag # found chain 1jmuB in template set Warning: unaligning (T0547)Y509 (1jmuB)W333 because G (3-10) conformation "forbidden" or filtered. T0547 501 :DVDVEKEN 1jmuB 325 :TLKIDEAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=76689 # 1yymG.501.131 read from T0547.t04.many.frag # found chain 1yymG in template set Warning: unaligning (T0547)D501 (1yymG)S274 because E (beta_S) conformation "forbidden" or filtered. T0547 502 :VDVEKENY 1yymG 275 :ENFTNNAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=76690 # 1euwA.501.21 read from T0547.t04.many.frag # found chain 1euwA in training set Warning: unaligning (T0547)D501 (1euwA)T22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1euwA)G27 because G (3-10) conformation "forbidden" or filtered. T0547 502 :VDVE 1euwA 23 :YATS T0547 507 :ENY 1euwA 28 :SAG Number of specific fragments extracted= 2 number of extra gaps= 2 total=76692 # 2brfA.501.22 read from T0547.t04.many.frag # found chain 2brfA in training set Warning: unaligning (T0547)D501 (2brfA)F23 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (2brfA)P25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (2brfA)G28 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (2brfA)Q29 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :V 2brfA 24 :L T0547 504 :VE 2brfA 26 :SD T0547 508 :NY 2brfA 30 :AL Number of specific fragments extracted= 3 number of extra gaps= 3 total=76695 # 1pmhX.501.37 read from T0547.t04.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)V502 (1pmhX)L39 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1pmhX)G43 because T (delta_L) conformation "forbidden" or filtered. T0547 501 :D 1pmhX 38 :D T0547 503 :DVE 1pmhX 40 :QRP T0547 507 :ENY 1pmhX 44 :NKY Number of specific fragments extracted= 3 number of extra gaps= 2 total=76698 # 1m9zA.501.76 read from T0547.t04.many.frag # found chain 1m9zA in training set T0547 501 :DVDVEKENY 1m9zA 102 :EKKKPGETF Number of specific fragments extracted= 1 number of extra gaps= 0 total=76699 # 1qazA.501.266 read from T0547.t04.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)E505 (1qazA)N274 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1qazA)D277 because Y (epsilon') conformation "forbidden" or filtered. T0547 501 :DVDV 1qazA 270 :AYKE T0547 506 :KE 1qazA 275 :GR T0547 509 :Y 1qazA 278 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=76702 # 1r6fA.501.200 read from T0547.t04.many.frag # found chain 1r6fA in template set Warning: unaligning (T0547)D503 (1r6fA)Q225 because E (beta_S) conformation "forbidden" or filtered. T0547 501 :DV 1r6fA 223 :TI T0547 504 :VEKENY 1r6fA 226 :VDGSEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=76704 # 2bwrA.501.220 read from T0547.t04.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)D503 (2bwrA)T223 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2bwrA)P228 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DV 2bwrA 221 :GW T0547 504 :VEKE 2bwrA 224 :ISAH T0547 509 :Y 2bwrA 229 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=76707 # 1txkA.501.173 read from T0547.t04.many.frag # found chain 1txkA in template set Warning: unaligning (T0547)D503 (1txkA)K197 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DV 1txkA 195 :RP T0547 504 :VEKENY 1txkA 198 :PTDKRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=76709 # 1odhA.501.62 read from T0547.t04.many.frag # found chain 1odhA in template set Warning: unaligning (T0547)E505 (1odhA)H67 because L (left) conformation "forbidden" or filtered. T0547 501 :DVDV 1odhA 63 :NTNN T0547 506 :KENY 1odhA 68 :NSRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=76711 # 1vprA.501.152 read from T0547.t04.many.frag # found chain 1vprA in training set Warning: unaligning (T0547)E507 (1vprA)N1024 because L (left) conformation "forbidden" or filtered. T0547 501 :DVDVEK 1vprA 1018 :GYVPKT T0547 508 :NY 1vprA 1025 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=76713 # 1oewA.501.185 read from T0547.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)V504 (1oewA)T189 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1oewA)G192 because T (delta_L) conformation "forbidden" or filtered. T0547 501 :DVD 1oewA 186 :AVS T0547 505 :EK 1oewA 190 :KQ T0547 508 :NY 1oewA 193 :FW Number of specific fragments extracted= 3 number of extra gaps= 2 total=76716 # 1tyjA.501.77 read from T0547.t04.many.frag # found chain 1tyjA in template set T0547 501 :DVDVEKENY 1tyjA 79 :KHNLSQGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=76717 # 1ftrA.501.143 read from T0547.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)E507 (1ftrA)G150 because Y (epsilon') conformation "forbidden" or filtered. T0547 501 :DVDVEK 1ftrA 144 :KIPVVE T0547 508 :NY 1ftrA 151 :EF Number of specific fragments extracted= 2 number of extra gaps= 1 total=76719 # 2a6zA.502.185 read from T0547.t04.many.frag # found chain 2a6zA in training set T0547 502 :VDVEKENYF 2a6zA 191 :VRFPSGSYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=76720 # 1h6lA.502.78 read from T0547.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0547)E505 (1h6lA)N110 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1h6lA)K113 because E (beta_S) conformation "forbidden" or filtered. T0547 502 :VDV 1h6lA 107 :FPL T0547 506 :KE 1h6lA 111 :GK T0547 509 :YF 1h6lA 114 :VD Number of specific fragments extracted= 3 number of extra gaps= 2 total=76723 # 1r17A.502.186 read from T0547.t04.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)D503 (1r17A)D443 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1r17A)H447 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1r17A)T448 because E (beta_S) conformation "forbidden" or filtered. T0547 502 :V 1r17A 442 :I T0547 504 :VEK 1r17A 444 :TKN T0547 509 :YF 1r17A 449 :VE Number of specific fragments extracted= 3 number of extra gaps= 2 total=76726 # 1o0sA.502.464 read from T0547.t04.many.frag # found chain 1o0sA in template set T0547 502 :VDVEKENYF 1o0sA 465 :FELNGHTYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=76727 # 1n12A.502.97 read from T0547.t04.many.frag # found chain 1n12A in template set T0547 502 :VDVEKENYF 1n12A 109 :ITGNNADKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=76728 # 1uteA.502.121 read from T0547.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)K506 (1uteA)R126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1uteA)S127 because Y (epsilon') conformation "forbidden" or filtered. T0547 502 :VDVE 1uteA 122 :FKIP T0547 508 :NYF 1uteA 128 :NVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=76730 # 1uc2A.502.336 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)D503 (1uc2A)E338 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1uc2A)D340 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1uc2A)G341 because T (delta_L) conformation "forbidden" or filtered. T0547 502 :V 1uc2A 337 :H T0547 504 :V 1uc2A 339 :V T0547 507 :ENYF 1uc2A 342 :KRVK Number of specific fragments extracted= 3 number of extra gaps= 2 total=76733 # 1pg6A.502.105 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)E505 (1pg6A)G102 because Y (epsilon') conformation "forbidden" or filtered. T0547 502 :VDV 1pg6A 99 :LEL T0547 506 :KENYF 1pg6A 103 :EKQYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=76735 # 1a8d.502.213 read from T0547.t04.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)E507 (1a8d)Q219 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1a8d)Y220 because Y (epsilon') conformation "forbidden" or filtered. T0547 502 :VDVEK 1a8d 214 :CNNNN T0547 509 :YF 1a8d 221 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=76737 # 1w96A.502.465 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 502 :VDVEKENYF 1w96A 478 :LNFRSSSNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=76738 # 1ln1A.502.122 read from T0547.t04.many.frag # found chain 1ln1A in template set Warning: unaligning (T0547)K506 (1ln1A)G127 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1ln1A)R128 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :VDVE 1ln1A 123 :LDME T0547 508 :NYF 1ln1A 129 :KIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=76740 # 1q79A.502.425 read from T0547.t04.many.frag # found chain 1q79A in template set Warning: unaligning (T0547)D503 (1q79A)N427 because D (zeta) conformation "forbidden" or filtered. T0547 502 :V 1q79A 426 :E T0547 504 :VEKENYF 1q79A 428 :PDKEEFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=76742 # 1txkA.502.174 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 502 :VDVEKENYF 1txkA 196 :PKPTDKRLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=76743 # 1pmhX.502.38 read from T0547.t04.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)E507 (1pmhX)N44 because D (zeta) conformation "forbidden" or filtered. T0547 502 :VDVEK 1pmhX 39 :LQRPG T0547 508 :NYF 1pmhX 45 :KYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=76745 # 1lm8V.502.86 read from T0547.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)D503 (1lm8V)N141 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. T0547 502 :V 1lm8V 140 :L T0547 504 :V 1lm8V 142 :V T0547 506 :KENYF 1lm8V 144 :GQPIF Number of specific fragments extracted= 3 number of extra gaps= 2 total=76748 # 1yymG.502.132 read from T0547.t04.many.frag # found chain 1yymG in template set T0547 502 :VDVEKENYF 1yymG 275 :ENFTNNAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=76749 # 1m9zA.502.77 read from T0547.t04.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)D503 (1m9zA)K104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1m9zA)G107 because T (delta_L) conformation "forbidden" or filtered. T0547 502 :V 1m9zA 103 :K T0547 504 :VE 1m9zA 105 :KP T0547 507 :ENYF 1m9zA 108 :ETFF Number of specific fragments extracted= 3 number of extra gaps= 2 total=76752 # 1ddlA.502.131 read from T0547.t04.many.frag # found chain 1ddlA in template set T0547 502 :VDVEKENYF 1ddlA 132 :ANLTNLNPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=76753 # 1jmuB.502.283 read from T0547.t04.many.frag # found chain 1jmuB in template set T0547 502 :VDVEKENYF 1jmuB 326 :LKIDEATWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=76754 # 1qz8A.502.32 read from T0547.t04.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)V504 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1qz8A)K36 Warning: unaligning (T0547)E505 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1qz8A)K36 Warning: unaligning (T0547)E507 (1qz8A)G38 because S (epsilon) conformation "forbidden" or filtered. T0547 502 :VD 1qz8A 33 :NN T0547 506 :K 1qz8A 37 :G T0547 508 :NYF 1qz8A 39 :RFV Number of specific fragments extracted= 3 number of extra gaps= 2 total=76757 # 1tyjA.502.78 read from T0547.t04.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)K506 (1tyjA)Q84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1tyjA)G85 because L (left) conformation "forbidden" or filtered. T0547 502 :VDVE 1tyjA 80 :HNLS T0547 508 :NYF 1tyjA 86 :VLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=76759 # 2brfA.502.23 read from T0547.t04.many.frag # found chain 2brfA in training set Warning: unaligning (T0547)E505 (2brfA)D27 because L (left) conformation "forbidden" or filtered. T0547 502 :VDV 2brfA 24 :LPS T0547 506 :KENYF 2brfA 28 :GQALV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76761 # 2biqA.502.129 read from T0547.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)N508 (2biqA)C229 because Y (epsilon') conformation "forbidden" or filtered. T0547 502 :VDVEKE 2biqA 223 :PEVGSD T0547 509 :YF 2biqA 230 :TT Number of specific fragments extracted= 2 number of extra gaps= 1 total=76763 # 2bpa2.502.132 read from T0547.t04.many.frag # found chain 2bpa2 in template set T0547 502 :VDVEKENYF 2bpa2 133 :PRTPGNNVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=76764 # 2bwrA.502.221 read from T0547.t04.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)N508 (2bwrA)P228 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :VDVEKE 2bwrA 222 :WTISAH T0547 509 :YF 2bwrA 229 :RV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76766 # 1vprA.502.153 read from T0547.t04.many.frag # found chain 1vprA in training set Warning: unaligning (T0547)K506 (1vprA)T1023 because G (3-10) conformation "forbidden" or filtered. T0547 502 :VDVE 1vprA 1019 :YVPK T0547 507 :ENYF 1vprA 1024 :NPLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=76768 # 1n8yC.502.260 read from T0547.t04.many.frag # found chain 1n8yC in template set T0547 502 :VDVEKENYF 1n8yC 261 :MHNPEGRYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=76769 # 1dmhA.502.182 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)D503 (1dmhA)T184 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1dmhA)G188 because L (left) conformation "forbidden" or filtered. T0547 502 :V 1dmhA 183 :I T0547 504 :VEK 1dmhA 185 :DEN T0547 508 :NYF 1dmhA 189 :QYR Number of specific fragments extracted= 3 number of extra gaps= 2 total=76772 # 1euwA.502.22 read from T0547.t04.many.frag # found chain 1euwA in training set T0547 502 :VDVEKENYF 1euwA 23 :YATSGSAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=76773 # 1r77A.502.87 read from T0547.t04.many.frag # found chain 1r77A in training set T0547 502 :VDVEKENYF 1r77A 347 :WNESTGELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=76774 # 2a6zA.503.186 read from T0547.t04.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)E507 (2a6zA)G196 because Y (epsilon') conformation "forbidden" or filtered. T0547 503 :DVEK 2a6zA 192 :RFPS T0547 508 :NYFL 2a6zA 197 :SYRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=76776 # 1h6lA.503.79 read from T0547.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0547)K506 (1h6lA)G111 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DVE 1h6lA 108 :PLN T0547 507 :ENYFL 1h6lA 112 :KKVDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=76778 # 1r17A.503.187 read from T0547.t04.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)E507 (1r17A)H447 because L (left) conformation "forbidden" or filtered. T0547 503 :DVEK 1r17A 443 :DTKN T0547 508 :NYFL 1r17A 448 :TVEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=76780 # 1uteA.503.122 read from T0547.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)E505 (1uteA)P125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1uteA)S127 because Y (epsilon') conformation "forbidden" or filtered. T0547 503 :DV 1uteA 123 :KI T0547 506 :K 1uteA 126 :R T0547 508 :NYFL 1uteA 128 :NVSV Number of specific fragments extracted= 3 number of extra gaps= 2 total=76783 # 1q79A.503.426 read from T0547.t04.many.frag # found chain 1q79A in template set T0547 503 :DVEKENYFL 1q79A 427 :NPDKEEFRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=76784 # 1qz8A.503.33 read from T0547.t04.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)V504 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1qz8A)K36 Warning: unaligning (T0547)E505 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1qz8A)K36 Warning: unaligning (T0547)E507 (1qz8A)G38 because S (epsilon) conformation "forbidden" or filtered. T0547 503 :D 1qz8A 34 :N T0547 506 :K 1qz8A 37 :G T0547 508 :NYFL 1qz8A 39 :RFVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=76787 # 1n12A.503.98 read from T0547.t04.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)D503 (1n12A)T110 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VEKENYFL 1n12A 111 :GNNADKTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=76788 # 1pg6A.503.106 read from T0547.t04.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)E505 (1pg6A)G102 because Y (epsilon') conformation "forbidden" or filtered. T0547 503 :DV 1pg6A 100 :EL T0547 506 :KENYFL 1pg6A 103 :EKQYRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=76790 # 1lm8V.503.87 read from T0547.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)K506 (1lm8V)G144 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1lm8V)P146 because P (beta_P) conformation "forbidden" or filtered. T0547 503 :DVE 1lm8V 141 :NVD T0547 507 :E 1lm8V 145 :Q T0547 509 :YFL 1lm8V 147 :IFA Number of specific fragments extracted= 3 number of extra gaps= 2 total=76793 # 1uc2A.503.337 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)K506 (1uc2A)G341 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DVE 1uc2A 338 :EVD T0547 507 :ENYFL 1uc2A 342 :KRVKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76795 # 1txkA.503.175 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 503 :DVEKENYFL 1txkA 197 :KPTDKRLTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=76796 # 1tyjA.503.79 read from T0547.t04.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)E507 (1tyjA)G85 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L511 (1tyjA)F89 because Y (epsilon') conformation "forbidden" or filtered. T0547 503 :DVEK 1tyjA 81 :NLSQ T0547 508 :NYF 1tyjA 86 :VLN Number of specific fragments extracted= 2 number of extra gaps= 2 total=76798 # 1dmhA.503.183 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)D503 (1dmhA)T184 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1dmhA)N187 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1dmhA)G188 because L (left) conformation "forbidden" or filtered. T0547 504 :VE 1dmhA 185 :DE T0547 508 :NYFL 1dmhA 189 :QYRV Number of specific fragments extracted= 2 number of extra gaps= 2 total=76800 # 1ln1A.503.123 read from T0547.t04.many.frag # found chain 1ln1A in template set Warning: unaligning (T0547)K506 (1ln1A)G127 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DVE 1ln1A 124 :DME T0547 507 :ENYFL 1ln1A 128 :RKIHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76802 # 2bpa2.503.133 read from T0547.t04.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0547)E507 (2bpa2)N138 because P (beta_P) conformation "forbidden" or filtered. T0547 503 :DVEK 2bpa2 134 :RTPG T0547 508 :NYFL 2bpa2 139 :NVYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76804 # 1o0sA.503.465 read from T0547.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)E505 (1o0sA)N468 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1o0sA)G469 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1o0sA)T471 because P (beta_P) conformation "forbidden" or filtered. T0547 503 :DV 1o0sA 466 :EL T0547 507 :E 1o0sA 470 :H T0547 509 :YFL 1o0sA 472 :YKP Number of specific fragments extracted= 3 number of extra gaps= 2 total=76807 1khbA expands to /projects/compbio/data/pdb/1khb.pdb.gz 1khbA:# 1khbA.503.274 read from T0547.t04.many.frag # adding 1khbA to template set # found chain 1khbA in template set Warning: unaligning (T0547)K506 (1khbA)G275 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DVE 1khbA 272 :NPE T0547 507 :ENYFL 1khbA 276 :EKKYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=76809 # 1euvA.503.108 read from T0547.t04.many.frag # found chain 1euvA in training set Warning: unaligning (T0547)E505 (1euvA)N511 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1euvA)Q512 because L (left) conformation "forbidden" or filtered. T0547 503 :DV 1euvA 509 :NL T0547 507 :ENYFL 1euvA 513 :SHWAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=76811 # 1a8d.503.214 read from T0547.t04.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)E507 (1a8d)Q219 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1a8d)Y220 because Y (epsilon') conformation "forbidden" or filtered. T0547 503 :DVEK 1a8d 215 :NNNN T0547 509 :YFL 1a8d 221 :VSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=76813 # 2erfA.503.84 read from T0547.t04.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)N508 (2erfA)G96 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F510 (2erfA)V98 because G (3-10) conformation "forbidden" or filtered. T0547 503 :DVEKE 2erfA 91 :RKDHS T0547 509 :Y 2erfA 97 :Q T0547 511 :L 2erfA 99 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=76816 # 2brfA.503.24 read from T0547.t04.many.frag # found chain 2brfA in training set Warning: unaligning (T0547)E505 (2brfA)D27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (2brfA)G28 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DV 2brfA 25 :PS T0547 507 :ENYFL 2brfA 29 :QALVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=76818 # 1m9zA.503.78 read from T0547.t04.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)D503 (1m9zA)K104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1m9zA)G107 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1m9zA)E108 because Y (epsilon') conformation "forbidden" or filtered. T0547 504 :VE 1m9zA 105 :KP T0547 508 :NYFL 1m9zA 109 :TFFM Number of specific fragments extracted= 2 number of extra gaps= 2 total=76820 # 1pmhX.503.39 read from T0547.t04.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)D503 (1pmhX)Q40 because P (beta_P) conformation "forbidden" or filtered. T0547 504 :VEKENYFL 1pmhX 41 :RPGNKYAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=76821 # 1ypyA.503.136 read from T0547.t04.many.frag # found chain 1ypyA in training set Warning: unaligning (T0547)D503 (1ypyA)G138 because Y (epsilon') conformation "forbidden" or filtered. T0547 504 :VEKENYFL 1ypyA 139 :APGSPTNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=76822 # 1w96A.503.466 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 503 :DVEKENYFL 1w96A 479 :NFRSSSNVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=76823 # 1n8yC.503.261 read from T0547.t04.many.frag # found chain 1n8yC in template set T0547 503 :DVEKENYFL 1n8yC 262 :HNPEGRYTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=76824 # 2biqA.503.130 read from T0547.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0547)E505 (2biqA)G226 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2biqA)C229 because Y (epsilon') conformation "forbidden" or filtered. T0547 503 :DV 2biqA 224 :EV T0547 506 :KE 2biqA 227 :SD T0547 509 :YFL 2biqA 230 :TTI Number of specific fragments extracted= 3 number of extra gaps= 2 total=76827 # 1yymG.503.133 read from T0547.t04.many.frag # found chain 1yymG in template set T0547 503 :DVEKENYFL 1yymG 276 :NFTNNAKTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=76828 # 1h6fA.503.44 read from T0547.t04.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)N508 (1h6fA)K148 because P (beta_P) conformation "forbidden" or filtered. T0547 503 :DVEKE 1h6fA 143 :LDKKA T0547 509 :YFL 1h6fA 149 :YIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=76830 # 1pguA.503.73 read from T0547.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)E505 (1pguA)K76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1pguA)G77 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DV 1pguA 74 :PI T0547 507 :ENYFL 1pguA 78 :SQYLC Number of specific fragments extracted= 2 number of extra gaps= 1 total=76832 # 2a6zA.504.187 read from T0547.t04.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)E505 (2a6zA)P194 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (2a6zA)G196 because Y (epsilon') conformation "forbidden" or filtered. T0547 504 :V 2a6zA 193 :F T0547 506 :K 2a6zA 195 :S T0547 508 :NYFLG 2a6zA 197 :SYRIG Number of specific fragments extracted= 3 number of extra gaps= 2 total=76835 # 1qz8A.504.34 read from T0547.t04.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)V504 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1qz8A)K36 Warning: unaligning (T0547)E505 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1qz8A)K36 Warning: unaligning (T0547)E507 (1qz8A)G38 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1qz8A)A43 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :K 1qz8A 37 :G T0547 508 :NYFL 1qz8A 39 :RFVL Number of specific fragments extracted= 2 number of extra gaps= 3 total=76837 # 1uteA.504.123 read from T0547.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)E507 (1uteA)S127 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1uteA)N128 because G (3-10) conformation "forbidden" or filtered. T0547 504 :VEK 1uteA 124 :IPR T0547 509 :YFLG 1uteA 129 :VSVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=76839 # 1euvA.504.109 read from T0547.t04.many.frag # found chain 1euvA in training set Warning: unaligning (T0547)E505 (1euvA)N511 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1euvA)Q512 because L (left) conformation "forbidden" or filtered. T0547 504 :V 1euvA 510 :L T0547 507 :ENYFLG 1euvA 513 :SHWALG Number of specific fragments extracted= 2 number of extra gaps= 1 total=76841 # 1h6lA.504.80 read from T0547.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0547)E505 (1h6lA)N110 because L (left) conformation "forbidden" or filtered. T0547 504 :V 1h6lA 109 :L T0547 506 :KENYFLG 1h6lA 111 :GKKVDIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=76843 # 2erfA.504.85 read from T0547.t04.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)N508 (2erfA)G96 because S (epsilon) conformation "forbidden" or filtered. T0547 504 :VEKE 2erfA 92 :KDHS T0547 509 :YFLG 2erfA 97 :QVFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=76845 # 1lm8V.504.88 read from T0547.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)E505 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1lm8V)G144 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1lm8V)N150 because P (beta_P) conformation "forbidden" or filtered. T0547 504 :V 1lm8V 142 :V T0547 507 :ENYFL 1lm8V 145 :QPIFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=76847 # 2bpa2.504.134 read from T0547.t04.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0547)E507 (2bpa2)N138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (2bpa2)G143 because Y (epsilon') conformation "forbidden" or filtered. T0547 504 :VEK 2bpa2 135 :TPG T0547 508 :NYFL 2bpa2 139 :NVYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=76849 # 1v04A.504.121 read from T0547.t04.many.frag # found chain 1v04A in template set T0547 504 :VEKENYFLG 1v04A 122 :DDDNTVYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=76850 # 1tyjA.504.80 read from T0547.t04.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)E507 (1tyjA)G85 because L (left) conformation "forbidden" or filtered. T0547 504 :VEK 1tyjA 82 :LSQ T0547 508 :NYFLG 1tyjA 86 :VLNFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=76852 # 1dmhA.504.184 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E507 (1dmhA)G188 because L (left) conformation "forbidden" or filtered. T0547 504 :VEK 1dmhA 185 :DEN T0547 508 :NYFLG 1dmhA 189 :QYRVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=76854 # 1pguA.504.74 read from T0547.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)N508 (1pguA)Q79 because L (left) conformation "forbidden" or filtered. T0547 504 :VEKE 1pguA 75 :IKGS T0547 509 :YFLG 1pguA 80 :YLCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=76856 # 1w96A.504.467 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 504 :VEKENYFLG 1w96A 480 :FRSSSNVWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=76857 # 1ypyA.504.137 read from T0547.t04.many.frag # found chain 1ypyA in training set Warning: unaligning (T0547)G512 (1ypyA)E147 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VEKENYFL 1ypyA 139 :APGSPTNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=76858 # 1r17A.504.188 read from T0547.t04.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)E507 (1r17A)H447 because L (left) conformation "forbidden" or filtered. T0547 504 :VEK 1r17A 444 :TKN T0547 508 :NYFLG 1r17A 448 :TVEQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=76860 # 1q79A.504.427 read from T0547.t04.many.frag # found chain 1q79A in template set T0547 504 :VEKENYFLG 1q79A 428 :PDKEEFRTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=76861 # 1khbA.504.275 read from T0547.t04.many.frag # found chain 1khbA in template set T0547 504 :VEKENYFLG 1khbA 273 :PEGEKKYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=76862 # 1txkA.504.176 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 504 :VEKENYFLG 1txkA 198 :PTDKRLTIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=76863 # 1h6fA.504.45 read from T0547.t04.many.frag # found chain 1h6fA in training set T0547 504 :VEKENYFLG 1h6fA 144 :DKKAKYILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=76864 # 1k8wA.504.297 read from T0547.t04.many.frag # found chain 1k8wA in template set T0547 504 :VEKENYFLG 1k8wA 285 :EGENGKFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=76865 # 1uc2A.504.338 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)K506 (1uc2A)G341 because T (delta_L) conformation "forbidden" or filtered. T0547 504 :VE 1uc2A 339 :VD T0547 507 :ENYFLG 1uc2A 342 :KRVKVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=76867 # 1bu6O.504.231 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)K506 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1bu6O)T235 Warning: unaligning (T0547)E507 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1bu6O)T235 T0547 504 :VE 1bu6O 232 :KG T0547 508 :NYFLG 1bu6O 236 :RIPIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=76869 # 1qhdA.504.170 read from T0547.t04.many.frag # found chain 1qhdA in template set T0547 504 :VEKENYFLG 1qhdA 170 :QPAHDNLMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=76870 1thqA expands to /projects/compbio/data/pdb/1thq.pdb.gz 1thqA:# 1thqA.504.96 read from T0547.t04.many.frag # adding 1thqA to template set # found chain 1thqA in template set Warning: unaligning (T0547)G512 (1thqA)G104 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VEKENYFL 1thqA 96 :LADENFHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=76871 # 1m9zA.504.79 read from T0547.t04.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)E505 (1m9zA)P106 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1m9zA)G107 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1m9zA)C113 because Y (epsilon') conformation "forbidden" or filtered. T0547 504 :V 1m9zA 105 :K T0547 507 :ENYFL 1m9zA 108 :ETFFM Number of specific fragments extracted= 2 number of extra gaps= 2 total=76873 # 1gycA.504.190 read from T0547.t04.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)K506 (1gycA)G193 because T (delta_L) conformation "forbidden" or filtered. T0547 504 :VE 1gycA 191 :QH T0547 507 :ENYFLG 1gycA 194 :KRYRFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=76875 # 1n12A.504.99 read from T0547.t04.many.frag # found chain 1n12A in template set T0547 504 :VEKENYFLG 1n12A 111 :GNNADKTIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=76876 # 1xcrA.504.196 read from T0547.t04.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)E505 (1xcrA)G197 because S (epsilon) conformation "forbidden" or filtered. T0547 504 :V 1xcrA 196 :Y T0547 506 :KENYFLG 1xcrA 198 :NKPIGMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=76878 # 1yq2A.504.618 read from T0547.t04.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)N508 (1yq2A)K622 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VEKE 1yq2A 618 :PAGG T0547 509 :YFLG 1yq2A 623 :PTLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=76880 # 1ln1A.504.124 read from T0547.t04.many.frag # found chain 1ln1A in template set Warning: unaligning (T0547)E507 (1ln1A)R128 because P (beta_P) conformation "forbidden" or filtered. T0547 504 :VEK 1ln1A 125 :MEG T0547 508 :NYFLG 1ln1A 129 :KIHVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=76882 # 1uteA.505.124 read from T0547.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)K506 (1uteA)R126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1uteA)S127 because Y (epsilon') conformation "forbidden" or filtered. T0547 505 :E 1uteA 125 :P T0547 508 :NYFLGF 1uteA 128 :NVSVAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=76884 # 1euvA.505.110 read from T0547.t04.many.frag # found chain 1euvA in training set Warning: unaligning (T0547)E505 (1euvA)N511 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1euvA)Q512 because L (left) conformation "forbidden" or filtered. T0547 507 :ENYFLGF 1euvA 513 :SHWALGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=76885 # 1qz8A.505.35 read from T0547.t04.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)E505 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1qz8A)K36 Warning: unaligning (T0547)E507 (1qz8A)G38 because S (epsilon) conformation "forbidden" or filtered. T0547 506 :K 1qz8A 37 :G T0547 508 :NYFLGF 1qz8A 39 :RFVLAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=76887 # 2a6zA.505.188 read from T0547.t04.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)E507 (2a6zA)G196 because Y (epsilon') conformation "forbidden" or filtered. T0547 505 :EK 2a6zA 194 :PS T0547 508 :NYFLGF 2a6zA 197 :SYRIGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76889 # 1h6lA.505.81 read from T0547.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0547)K506 (1h6lA)G111 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1h6lA)A117 because E (beta_S) conformation "forbidden" or filtered. T0547 505 :E 1h6lA 110 :N T0547 507 :ENYFL 1h6lA 112 :KKVDI T0547 513 :F 1h6lA 118 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=76892 # 1v04A.505.122 read from T0547.t04.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)E507 (1v04A)N125 because T (delta_L) conformation "forbidden" or filtered. T0547 505 :EK 1v04A 123 :DD T0547 508 :NYFLGF 1v04A 126 :TVYLLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=76894 # 2erfA.505.86 read from T0547.t04.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)G512 (2erfA)S100 because Y (epsilon') conformation "forbidden" or filtered. T0547 505 :EKENYFL 2erfA 93 :DHSGQVF T0547 513 :F 2erfA 101 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=76896 # 1k8wA.505.298 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)E505 (1k8wA)G286 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. T0547 506 :KE 1k8wA 287 :EN T0547 509 :YFLGF 1k8wA 290 :KFIGM Number of specific fragments extracted= 2 number of extra gaps= 2 total=76898 # 2bpa2.505.135 read from T0547.t04.many.frag # found chain 2bpa2 in template set T0547 505 :EKENYFLGF 2bpa2 136 :PGNNVYVGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=76899 # 1khbA.505.276 read from T0547.t04.many.frag # found chain 1khbA in template set T0547 505 :EKENYFLGF 1khbA 274 :EGEKKYLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=76900 # 1bu6O.505.232 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)K506 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1bu6O)T235 Warning: unaligning (T0547)E507 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1bu6O)T235 Warning: unaligning (T0547)G512 (1bu6O)S240 because G (3-10) conformation "forbidden" or filtered. T0547 505 :E 1bu6O 233 :G T0547 508 :NYFL 1bu6O 236 :RIPI T0547 513 :F 1bu6O 241 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=76903 # 1tyjA.505.81 read from T0547.t04.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)E507 (1tyjA)G85 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L511 (1tyjA)F89 because Y (epsilon') conformation "forbidden" or filtered. T0547 505 :EK 1tyjA 83 :SQ T0547 508 :NYF 1tyjA 86 :VLN T0547 512 :GF 1tyjA 90 :GR Number of specific fragments extracted= 3 number of extra gaps= 2 total=76906 # 1w96A.505.468 read from T0547.t04.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)G512 (1w96A)G488 because Y (epsilon') conformation "forbidden" or filtered. T0547 505 :EKENYFL 1w96A 481 :RSSSNVW T0547 513 :F 1w96A 489 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=76908 # 1pguA.505.75 read from T0547.t04.many.frag # found chain 1pguA in template set T0547 505 :EKENYFLGF 1pguA 76 :KGSQYLCSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=76909 # 1qhdA.505.171 read from T0547.t04.many.frag # found chain 1qhdA in template set Warning: unaligning (T0547)E507 (1qhdA)H173 because L (left) conformation "forbidden" or filtered. T0547 505 :EK 1qhdA 171 :PA T0547 508 :NYFLGF 1qhdA 174 :DNLMGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=76911 2fbeA expands to /projects/compbio/data/pdb/2fbe.pdb.gz 2fbeA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2fbeA.505.123 read from T0547.t04.many.frag # adding 2fbeA to template set # found chain 2fbeA in template set T0547 505 :EKENYFLGF 2fbeA 124 :SPQLHRVGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=76912 # 1txkA.505.177 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 505 :EKENYFLGF 1txkA 199 :TDKRLTIYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=76913 # 1gycA.505.191 read from T0547.t04.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)E505 (1gycA)H192 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1gycA)R199 because D (zeta) conformation "forbidden" or filtered. T0547 506 :KENYFL 1gycA 193 :GKRYRF T0547 513 :F 1gycA 200 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=76915 # 1dmhA.505.185 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E507 (1dmhA)G188 because L (left) conformation "forbidden" or filtered. T0547 505 :EK 1dmhA 186 :EN T0547 508 :NYFLGF 1dmhA 189 :QYRVRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=76917 1ohfA expands to /projects/compbio/data/pdb/1ohf.pdb.gz 1ohfA:# 1ohfA.505.145 read from T0547.t04.many.frag # adding 1ohfA to template set # found chain 1ohfA in template set T0547 505 :EKENYFLGF 1ohfA 146 :DGAQWSLSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=76918 # 1ypyA.505.138 read from T0547.t04.many.frag # found chain 1ypyA in training set T0547 505 :EKENYFLGF 1ypyA 140 :PGSPTNLEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=76919 # 1thqA.505.97 read from T0547.t04.many.frag # found chain 1thqA in template set T0547 505 :EKENYFLGF 1thqA 97 :ADENFHLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=76920 # 1h6fA.505.46 read from T0547.t04.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)N508 (1h6fA)K148 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1h6fA)L152 because Y (epsilon') conformation "forbidden" or filtered. T0547 505 :EKE 1h6fA 145 :KKA T0547 509 :YFL 1h6fA 149 :YIL T0547 513 :F 1h6fA 153 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=76923 # 2bswA.505.46 read from T0547.t04.many.frag # found chain 2bswA in template set Warning: unaligning (T0547)E505 (2bswA)G47 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (2bswA)G48 because T (delta_L) conformation "forbidden" or filtered. T0547 507 :ENYFLGF 2bswA 49 :KLISIAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=76924 # 1hp1A.505.452 read from T0547.t04.many.frag # found chain 1hp1A in training set T0547 505 :EKENYFLGF 1hp1A 487 :PAKTYRMAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=76925 # 1uc2A.505.339 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)E505 (1uc2A)D340 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1uc2A)I347 because N (gamma') conformation "forbidden" or filtered. T0547 506 :KENYFL 1uc2A 341 :GKRVKV T0547 513 :F 1uc2A 348 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=76927 # 1kv7A.505.462 read from T0547.t04.many.frag # found chain 1kv7A in training set T0547 505 :EKENYFLGF 1kv7A 491 :PKEHAYMAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=76928 # 1xcrA.505.197 read from T0547.t04.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)E505 (1xcrA)G197 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1xcrA)P200 because P (beta_P) conformation "forbidden" or filtered. T0547 506 :KE 1xcrA 198 :NK T0547 509 :YFLGF 1xcrA 201 :IGMGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=76930 # 2c27A.505.211 read from T0547.t04.many.frag # found chain 2c27A in template set Warning: unaligning (T0547)N508 (2c27A)G215 because T (delta_L) conformation "forbidden" or filtered. T0547 505 :EKE 2c27A 212 :ERP T0547 509 :YFLGF 2c27A 216 :RLLGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=76932 # 1yq2A.505.619 read from T0547.t04.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)E505 (1yq2A)A619 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1yq2A)G620 because T (delta_L) conformation "forbidden" or filtered. T0547 507 :ENYFLGF 1yq2A 621 :GKPTLAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=76933 # 1uteA.506.125 read from T0547.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)K506 (1uteA)R126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1uteA)S127 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYFLGFF 1uteA 128 :NVSVAIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=76934 # 1qz8A.506.36 read from T0547.t04.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)N508 (1qz8A)R39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1qz8A)A43 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :KE 1qz8A 37 :GG T0547 509 :YFL 1qz8A 40 :FVL T0547 513 :FF 1qz8A 44 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=76937 # 1euvA.506.111 read from T0547.t04.many.frag # found chain 1euvA in training set Warning: unaligning (T0547)K506 (1euvA)Q512 because L (left) conformation "forbidden" or filtered. T0547 507 :ENYFLGFF 1euvA 513 :SHWALGII Number of specific fragments extracted= 1 number of extra gaps= 1 total=76938 # 1w96A.506.469 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 506 :KENYFLGFF 1w96A 482 :SSSNVWGYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=76939 # 1h6lA.506.82 read from T0547.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0547)K506 (1h6lA)G111 because T (delta_L) conformation "forbidden" or filtered. T0547 507 :ENYFLGFF 1h6lA 112 :KKVDIAAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=76940 # 2a6zA.506.189 read from T0547.t04.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)E507 (2a6zA)G196 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :K 2a6zA 195 :S T0547 508 :NYFLGFF 2a6zA 197 :SYRIGVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=76942 # 1bu6O.506.233 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)K506 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1bu6O)T235 Warning: unaligning (T0547)E507 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1bu6O)T235 Warning: unaligning (T0547)G512 (1bu6O)S240 because G (3-10) conformation "forbidden" or filtered. T0547 508 :NYFL 1bu6O 236 :RIPI T0547 513 :FF 1bu6O 241 :GI Number of specific fragments extracted= 2 number of extra gaps= 2 total=76944 # 2fbeA.506.124 read from T0547.t04.many.frag # found chain 2fbeA in template set T0547 506 :KENYFLGFF 2fbeA 125 :PQLHRVGIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=76945 # 2b5gA.506.66 read from T0547.t04.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)E507 (2b5gA)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 506 :K 2b5gA 67 :E T0547 508 :NYFLGFF 2b5gA 69 :HSIVGFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=76947 # 1s3eA.506.307 read from T0547.t04.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)N508 (1s3eA)D310 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L511 (1s3eA)G313 because T (delta_L) conformation "forbidden" or filtered. T0547 506 :KE 1s3eA 308 :KK T0547 509 :YF 1s3eA 311 :YC T0547 512 :GFF 1s3eA 314 :TMI Number of specific fragments extracted= 3 number of extra gaps= 2 total=76950 # 1qhdA.506.172 read from T0547.t04.many.frag # found chain 1qhdA in template set Warning: unaligning (T0547)E507 (1qhdA)H173 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1qhdA)G178 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :K 1qhdA 172 :A T0547 508 :NYFL 1qhdA 174 :DNLM T0547 513 :FF 1qhdA 179 :TM Number of specific fragments extracted= 3 number of extra gaps= 2 total=76953 # 1v04A.506.123 read from T0547.t04.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)E507 (1v04A)N125 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1v04A)L130 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :K 1v04A 124 :D T0547 508 :NYFL 1v04A 126 :TVYL T0547 513 :FF 1v04A 131 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=76956 # 2c27A.506.212 read from T0547.t04.many.frag # found chain 2c27A in template set Warning: unaligning (T0547)K506 (2c27A)R213 because D (zeta) conformation "forbidden" or filtered. T0547 507 :ENYFLGFF 2c27A 214 :PGRLLGFH Number of specific fragments extracted= 1 number of extra gaps= 1 total=76957 # 2bpa2.506.136 read from T0547.t04.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0547)N508 (2bpa2)N139 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :KE 2bpa2 137 :GN T0547 509 :YFLGFF 2bpa2 140 :VYVGFM Number of specific fragments extracted= 2 number of extra gaps= 1 total=76959 # 1khbA.506.277 read from T0547.t04.many.frag # found chain 1khbA in template set Warning: unaligning (T0547)N508 (1khbA)K277 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1khbA)A281 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :KE 1khbA 275 :GE T0547 509 :YFL 1khbA 278 :KYL T0547 513 :FF 1khbA 282 :AA Number of specific fragments extracted= 3 number of extra gaps= 2 total=76962 # 1ohfA.506.146 read from T0547.t04.many.frag # found chain 1ohfA in template set Warning: unaligning (T0547)Y509 (1ohfA)W150 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :KEN 1ohfA 147 :GAQ T0547 510 :FLGFF 1ohfA 151 :SLSII Number of specific fragments extracted= 2 number of extra gaps= 1 total=76964 # 1kv7A.506.463 read from T0547.t04.many.frag # found chain 1kv7A in training set T0547 506 :KENYFLGFF 1kv7A 492 :KEHAYMAHC Number of specific fragments extracted= 1 number of extra gaps= 0 total=76965 # 2erfA.506.87 read from T0547.t04.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)K506 (2erfA)H94 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2erfA)G96 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (2erfA)S100 because Y (epsilon') conformation "forbidden" or filtered. T0547 507 :E 2erfA 95 :S T0547 509 :YFL 2erfA 97 :QVF T0547 513 :FF 2erfA 101 :VV Number of specific fragments extracted= 3 number of extra gaps= 3 total=76968 # 1k8wA.506.299 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)N508 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. T0547 506 :KE 1k8wA 287 :EN T0547 509 :YFLGFF 1k8wA 290 :KFIGMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=76970 # 1p3dA.506.364 read from T0547.t04.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)G512 (1p3dA)M371 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :KENYFL 1p3dA 365 :GDKRIV T0547 513 :FF 1p3dA 372 :IF Number of specific fragments extracted= 2 number of extra gaps= 1 total=76972 # 1pot.506.196 read from T0547.t04.many.frag # found chain 1pot in training set Warning: unaligning (T0547)E507 (1pot)G221 because L (left) conformation "forbidden" or filtered. T0547 506 :K 1pot 220 :E T0547 508 :NYFLGFF 1pot 222 :EVNLGMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=76974 # 1uc2A.506.340 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)K506 (1uc2A)G341 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1uc2A)R343 because P (beta_P) conformation "forbidden" or filtered. T0547 507 :E 1uc2A 342 :K T0547 509 :YFLGFF 1uc2A 344 :VKVIVH Number of specific fragments extracted= 2 number of extra gaps= 2 total=76976 # 1hp1A.506.453 read from T0547.t04.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)E507 (1hp1A)K489 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1hp1A)A494 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :K 1hp1A 488 :A T0547 508 :NYFL 1hp1A 490 :TYRM T0547 513 :FF 1hp1A 495 :TL Number of specific fragments extracted= 3 number of extra gaps= 2 total=76979 # 1gycA.506.192 read from T0547.t04.many.frag # found chain 1gycA in template set T0547 506 :KENYFLGFF 1gycA 193 :GKRYRFRLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=76980 # 1lml.506.135 read from T0547.t04.many.frag # found chain 1lml in template set Warning: unaligning (T0547)E507 (1lml)G236 because T (delta_L) conformation "forbidden" or filtered. T0547 506 :K 1lml 235 :D T0547 508 :NYFLGFF 1lml 237 :HPAVGVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=76982 # 1tyjA.506.82 read from T0547.t04.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)E507 (1tyjA)G85 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L511 (1tyjA)F89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1tyjA)G90 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :K 1tyjA 84 :Q T0547 508 :NYF 1tyjA 86 :VLN T0547 513 :FF 1tyjA 91 :RL Number of specific fragments extracted= 3 number of extra gaps= 2 total=76985 # 1pgs.506.72 read from T0547.t04.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)F514 (1pgs)F81 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :KENYFLGF 1pgs 73 :GEWYEIGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=76986 # 1lb6A.506.55 read from T0547.t04.many.frag # found chain 1lb6A in training set Warning: unaligning (T0547)E507 (1lb6A)C403 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1lb6A)A404 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 (1lb6A)N405 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1lb6A)S408 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :K 1lb6A 402 :R T0547 510 :FL 1lb6A 406 :YI T0547 513 :FF 1lb6A 409 :LF Number of specific fragments extracted= 3 number of extra gaps= 2 total=76989 # 1epuA.506.533 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)K506 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1epuA)K534 Warning: unaligning (T0547)E507 (1epuA)S535 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1epuA)G536 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 (1epuA)P537 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1epuA)I540 because P (beta_P) conformation "forbidden" or filtered. T0547 510 :FL 1epuA 538 :RL T0547 513 :FF 1epuA 541 :IF Number of specific fragments extracted= 2 number of extra gaps= 1 total=76991 # 1txkA.506.178 read from T0547.t04.many.frag # found chain 1txkA in template set T0547 506 :KENYFLGFF 1txkA 200 :DKRLTIYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=76992 # 1uteA.507.126 read from T0547.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)E507 (1uteA)S127 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYFLGFFL 1uteA 128 :NVSVAIFM Number of specific fragments extracted= 1 number of extra gaps= 1 total=76993 # 1w96A.507.470 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 507 :ENYFLGFFL 1w96A 483 :SSNVWGYFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=76994 # 1qz8A.507.37 read from T0547.t04.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)N508 (1qz8A)R39 because P (beta_P) conformation "forbidden" or filtered. T0547 507 :E 1qz8A 38 :G T0547 509 :YFLGFFL 1qz8A 40 :FVLALLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=76996 # 1pot.507.197 read from T0547.t04.many.frag # found chain 1pot in training set Warning: unaligning (T0547)E507 (1pot)G221 because L (left) conformation "forbidden" or filtered. T0547 508 :NYFLGFFL 1pot 222 :EVNLGMIW Number of specific fragments extracted= 1 number of extra gaps= 1 total=76997 # 2b5gA.507.67 read from T0547.t04.many.frag # found chain 2b5gA in training set T0547 507 :ENYFLGFFL 2b5gA 68 :GHSIVGFAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=76998 # 2a6zA.507.190 read from T0547.t04.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)E507 (2a6zA)G196 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (2a6zA)A204 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYFLGFF 2a6zA 197 :SYRIGVT Number of specific fragments extracted= 1 number of extra gaps= 2 total=76999 # 1euvA.507.112 read from T0547.t04.many.frag # found chain 1euvA in training set Warning: unaligning (T0547)N508 (1euvA)H514 because E (beta_S) conformation "forbidden" or filtered. T0547 507 :E 1euvA 513 :S T0547 509 :YFLGFFL 1euvA 515 :WALGIID Number of specific fragments extracted= 2 number of extra gaps= 1 total=77001 # 1bu6O.507.234 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)E507 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1bu6O)T235 Warning: unaligning (T0547)L515 (1bu6O)A243 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYFLGFF 1bu6O 236 :RIPISGI Number of specific fragments extracted= 1 number of extra gaps= 2 total=77002 # 1epuA.507.534 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)E507 (1epuA)S535 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1epuA)G536 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 (1epuA)P537 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1epuA)I540 because P (beta_P) conformation "forbidden" or filtered. T0547 510 :FL 1epuA 538 :RL T0547 513 :FFL 1epuA 541 :IFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=77004 # 1h6lA.507.83 read from T0547.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0547)E507 (1h6lA)K112 because P (beta_P) conformation "forbidden" or filtered. T0547 508 :NYFLGFFL 1h6lA 113 :KVDIAAAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=77005 # 2fbeA.507.125 read from T0547.t04.many.frag # found chain 2fbeA in template set Warning: unaligning (T0547)G512 (2fbeA)G131 because P (beta_P) conformation "forbidden" or filtered. T0547 507 :ENYFL 2fbeA 126 :QLHRV T0547 513 :FFL 2fbeA 132 :IFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77007 # 2bpa2.507.137 read from T0547.t04.many.frag # found chain 2bpa2 in template set T0547 507 :ENYFLGFFL 2bpa2 138 :NNVYVGFMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77008 # 1khbA.507.278 read from T0547.t04.many.frag # found chain 1khbA in template set T0547 507 :ENYFLGFFL 1khbA 276 :EKKYLAAAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=77009 # 1s3eA.507.308 read from T0547.t04.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)G512 (1s3eA)T314 because P (beta_P) conformation "forbidden" or filtered. T0547 507 :ENYFL 1s3eA 309 :KDYCG T0547 513 :FFL 1s3eA 315 :MII Number of specific fragments extracted= 2 number of extra gaps= 1 total=77011 # 1p3dA.507.365 read from T0547.t04.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)G512 (1p3dA)M371 because E (beta_S) conformation "forbidden" or filtered. T0547 507 :ENYFL 1p3dA 366 :DKRIV T0547 513 :FFL 1p3dA 372 :IFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=77013 # 1kv7A.507.464 read from T0547.t04.many.frag # found chain 1kv7A in training set T0547 507 :ENYFLGFFL 1kv7A 493 :EHAYMAHCH Number of specific fragments extracted= 1 number of extra gaps= 0 total=77014 # 1gycA.507.193 read from T0547.t04.many.frag # found chain 1gycA in template set T0547 507 :ENYFLGFFL 1gycA 194 :KRYRFRLVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77015 # 2c27A.507.213 read from T0547.t04.many.frag # found chain 2c27A in template set Warning: unaligning (T0547)N508 (2c27A)G215 because T (delta_L) conformation "forbidden" or filtered. T0547 507 :E 2c27A 214 :P T0547 509 :YFLGFFL 2c27A 216 :RLLGFHW Number of specific fragments extracted= 2 number of extra gaps= 1 total=77017 # 2akaB.507.191 read from T0547.t04.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)G512 (2akaB)G202 because P (beta_P) conformation "forbidden" or filtered. T0547 507 :ENYFL 2akaB 197 :GQRTI T0547 513 :FFL 2akaB 203 :VIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=77019 # 1qhdA.507.173 read from T0547.t04.many.frag # found chain 1qhdA in template set Warning: unaligning (T0547)E507 (1qhdA)H173 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (1qhdA)W181 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYFLGFF 1qhdA 174 :DNLMGTM Number of specific fragments extracted= 1 number of extra gaps= 2 total=77020 # 1pgs.507.73 read from T0547.t04.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)E507 (1pgs)E74 because P (beta_P) conformation "forbidden" or filtered. T0547 508 :NYFLGFFL 1pgs 75 :WYEIGRFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=77021 # 1lml.507.136 read from T0547.t04.many.frag # found chain 1lml in template set Warning: unaligning (T0547)E507 (1lml)G236 because T (delta_L) conformation "forbidden" or filtered. T0547 508 :NYFLGFFL 1lml 237 :HPAVGVIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=77022 # 2erfA.507.88 read from T0547.t04.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)N508 (2erfA)G96 because S (epsilon) conformation "forbidden" or filtered. T0547 507 :E 2erfA 95 :S T0547 509 :YFLGFFL 2erfA 97 :QVFSVVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=77024 # 1k8wA.507.300 read from T0547.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)N508 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. T0547 507 :E 1k8wA 288 :N T0547 509 :YFLGFFL 1k8wA 290 :KFIGMGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=77026 1xruA expands to /projects/compbio/data/pdb/1xru.pdb.gz 1xruA:Skipped atom 22, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 24, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 26, because occupancy 0.500 <= existing 0.500 in 1xruA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 402, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 404, because occupancy 0.500 <= existing 0.500 in 1xruA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1088, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 1090, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 1092, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 1094, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 1392, because occupancy 0.500 <= existing 0.500 in 1xruA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1435, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 1437, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 1439, because occupancy 0.500 <= existing 0.500 in 1xruA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1953, because occupancy 0.500 <= existing 0.500 in 1xruA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xruA.507.76 read from T0547.t04.many.frag # adding 1xruA to template set # found chain 1xruA in template set Warning: unaligning (T0547)G512 (1xruA)G79 because E (beta_S) conformation "forbidden" or filtered. T0547 507 :ENYFL 1xruA 74 :ERREL T0547 513 :FFL 1xruA 80 :VIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=77028 # 1ohfA.507.147 read from T0547.t04.many.frag # found chain 1ohfA in template set Warning: unaligning (T0547)G512 (1ohfA)S153 because E (beta_S) conformation "forbidden" or filtered. T0547 507 :ENYFL 1ohfA 148 :AQWSL T0547 513 :FFL 1ohfA 154 :IIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=77030 # 1v04A.507.124 read from T0547.t04.many.frag # found chain 1v04A in template set T0547 507 :ENYFLGFFL 1v04A 125 :NTVYLLVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=77031 # 1uc2A.507.341 read from T0547.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)G512 (1uc2A)I347 because N (gamma') conformation "forbidden" or filtered. T0547 507 :ENYFL 1uc2A 342 :KRVKV T0547 513 :FFL 1uc2A 348 :VHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=77033 # 1lb6A.507.56 read from T0547.t04.many.frag # found chain 1lb6A in training set T0547 507 :ENYFLGFFL 1lb6A 403 :CANYISLFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77034 # 1tyjA.507.83 read from T0547.t04.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)L511 (1tyjA)F89 because Y (epsilon') conformation "forbidden" or filtered. T0547 507 :ENYF 1tyjA 85 :GVLN T0547 512 :GFFL 1tyjA 90 :GRLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=77036 # 1uteA.508.127 read from T0547.t04.many.frag # found chain 1uteA in training set T0547 508 :NYFLGFFLV 1uteA 128 :NVSVAIFML Number of specific fragments extracted= 1 number of extra gaps= 0 total=77037 # 1pot.508.198 read from T0547.t04.many.frag # found chain 1pot in training set Warning: unaligning (T0547)G512 (1pot)G226 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYFL 1pot 222 :EVNL T0547 513 :FFLV 1pot 227 :MIWN Number of specific fragments extracted= 2 number of extra gaps= 1 total=77039 # 1w96A.508.471 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 508 :NYFLGFFLV 1w96A 484 :SNVWGYFSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77040 # 1qz8A.508.38 read from T0547.t04.many.frag # found chain 1qz8A in template set T0547 508 :NYFLGFFLV 1qz8A 39 :RFVLALLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=77041 # 1epuA.508.535 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)N508 (1epuA)G536 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 (1epuA)P537 because C (cis) conformation "forbidden" or filtered. T0547 510 :FLGFFLV 1epuA 538 :RLIIFVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=77042 # 2bpa2.508.138 read from T0547.t04.many.frag # found chain 2bpa2 in template set T0547 508 :NYFLGFFLV 2bpa2 139 :NVYVGFMVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=77043 # 1bu6O.508.235 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)L515 (1bu6O)A243 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYFLGFF 1bu6O 236 :RIPISGI T0547 516 :V 1bu6O 244 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=77045 # 1kv7A.508.465 read from T0547.t04.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)G512 (1kv7A)A498 because E (beta_S) conformation "forbidden" or filtered. T0547 508 :NYFL 1kv7A 494 :HAYM T0547 513 :FFLV 1kv7A 499 :HCHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77047 # 1euvA.508.113 read from T0547.t04.many.frag # found chain 1euvA in training set T0547 508 :NYFLGFFLV 1euvA 514 :HWALGIIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77048 # 1gycA.508.194 read from T0547.t04.many.frag # found chain 1gycA in template set T0547 508 :NYFLGFFLV 1gycA 195 :RYRFRLVSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77049 # 1h6lA.508.84 read from T0547.t04.many.frag # found chain 1h6lA in training set T0547 508 :NYFLGFFLV 1h6lA 113 :KVDIAAASN Number of specific fragments extracted= 1 number of extra gaps= 0 total=77050 # 2fbeA.508.126 read from T0547.t04.many.frag # found chain 2fbeA in template set T0547 508 :NYFLGFFLV 2fbeA 127 :LHRVGIFLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=77051 # 1khbA.508.279 read from T0547.t04.many.frag # found chain 1khbA in template set Warning: unaligning (T0547)G512 (1khbA)A281 because E (beta_S) conformation "forbidden" or filtered. T0547 508 :NYFL 1khbA 277 :KKYL T0547 513 :FFLV 1khbA 282 :AAFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=77053 # 2a6zA.508.191 read from T0547.t04.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)L515 (2a6zA)A204 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYFLGFF 2a6zA 197 :SYRIGVT T0547 516 :V 2a6zA 205 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=77055 # 1pgs.508.74 read from T0547.t04.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)N508 (1pgs)W75 because P (beta_P) conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 1pgs 76 :YEIGRFIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=77056 # 2akaB.508.192 read from T0547.t04.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)G512 (2akaB)G202 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V516 (2akaB)K206 because L (left) conformation "forbidden" or filtered. T0547 508 :NYFL 2akaB 198 :QRTI T0547 513 :FFL 2akaB 203 :VIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=77058 # 1uc2A.508.342 read from T0547.t04.many.frag # found chain 1uc2A in template set T0547 508 :NYFLGFFLV 1uc2A 343 :RVKVIVHRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=77059 # 2b5gA.508.68 read from T0547.t04.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)G512 (2b5gA)G73 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYFL 2b5gA 69 :HSIV T0547 513 :FFLV 2b5gA 74 :FAMY Number of specific fragments extracted= 2 number of extra gaps= 1 total=77061 # 1tyjA.508.84 read from T0547.t04.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)L511 (1tyjA)F89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1tyjA)G90 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYF 1tyjA 86 :VLN T0547 513 :FFLV 1tyjA 91 :RLYM Number of specific fragments extracted= 2 number of extra gaps= 1 total=77063 # 1lml.508.137 read from T0547.t04.many.frag # found chain 1lml in template set T0547 508 :NYFLGFFLV 1lml 237 :HPAVGVINI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77064 # 1hp1A.508.347 read from T0547.t04.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)G512 (1hp1A)G386 because H (helix) conformation "forbidden" or filtered. T0547 508 :NYFL 1hp1A 382 :QTNM T0547 513 :FFLV 1hp1A 387 :RLIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77066 # 1xruA.508.77 read from T0547.t04.many.frag # found chain 1xruA in template set T0547 508 :NYFLGFFLV 1xruA 75 :RRELGVINI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77067 # 1hp1A.508.455 read from T0547.t04.many.frag # found chain 1hp1A in training set T0547 508 :NYFLGFFLV 1hp1A 490 :TYRMATLNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=77068 # 1s3eA.508.309 read from T0547.t04.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)G512 (1s3eA)T314 because P (beta_P) conformation "forbidden" or filtered. T0547 508 :NYFL 1s3eA 310 :DYCG T0547 513 :FFLV 1s3eA 315 :MIID Number of specific fragments extracted= 2 number of extra gaps= 1 total=77070 # 1p3dA.508.366 read from T0547.t04.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)G512 (1p3dA)M371 because E (beta_S) conformation "forbidden" or filtered. T0547 508 :NYFL 1p3dA 367 :KRIV T0547 513 :FFLV 1p3dA 372 :IFQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=77072 # 2c27A.508.214 read from T0547.t04.many.frag # found chain 2c27A in template set T0547 508 :NYFLGFFLV 2c27A 215 :GRLLGFHWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77073 # 1ohfA.508.148 read from T0547.t04.many.frag # found chain 1ohfA in template set T0547 508 :NYFLGFFLV 1ohfA 149 :QWSLSIISY Number of specific fragments extracted= 1 number of extra gaps= 0 total=77074 # 1l1lA.508.466 read from T0547.t04.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)Y509 (1l1lA)R468 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1l1lA)G471 because D (zeta) conformation "forbidden" or filtered. T0547 508 :N 1l1lA 467 :N T0547 510 :FL 1l1lA 469 :RI T0547 513 :FFLV 1l1lA 472 :ISMS Number of specific fragments extracted= 3 number of extra gaps= 2 total=77077 # 2bjqA.508.129 read from T0547.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0547)G512 (2bjqA)G134 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYFL 2bjqA 130 :KDLL T0547 513 :FFLV 2bjqA 135 :YIDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=77079 # 1qhdA.508.174 read from T0547.t04.many.frag # found chain 1qhdA in template set Warning: unaligning (T0547)L515 (1qhdA)W181 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYFLGFF 1qhdA 174 :DNLMGTM T0547 516 :V 1qhdA 182 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=77081 # 1uteA.509.128 read from T0547.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)G512 (1uteA)A132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1uteA)D137 because D (zeta) conformation "forbidden" or filtered. T0547 509 :YFL 1uteA 129 :VSV T0547 513 :FFLV 1uteA 133 :IFML Number of specific fragments extracted= 2 number of extra gaps= 2 total=77083 # 1pot.509.199 read from T0547.t04.many.frag # found chain 1pot in training set Warning: unaligning (T0547)L511 (1pot)L225 because Y (epsilon') conformation "forbidden" or filtered. T0547 509 :YF 1pot 223 :VN T0547 512 :GFFLVG 1pot 226 :GMIWNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=77085 # 1w96A.509.472 read from T0547.t04.many.frag # found chain 1w96A in training set T0547 509 :YFLGFFLVG 1w96A 485 :NVWGYFSVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77086 # 1euvA.509.114 read from T0547.t04.many.frag # found chain 1euvA in training set Warning: unaligning (T0547)G512 (1euvA)G518 because E (beta_S) conformation "forbidden" or filtered. T0547 509 :YFL 1euvA 515 :WAL T0547 513 :FFLVG 1euvA 519 :IIDLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=77088 # 1kv7A.509.466 read from T0547.t04.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)F513 (1kv7A)H499 because Y (epsilon') conformation "forbidden" or filtered. T0547 509 :YFLG 1kv7A 495 :AYMA T0547 514 :FLVG 1kv7A 500 :CHLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77090 # 1qz8A.509.39 read from T0547.t04.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)G512 (1qz8A)A43 because Y (epsilon') conformation "forbidden" or filtered. T0547 509 :YFL 1qz8A 40 :FVL T0547 513 :FFLVG 1qz8A 44 :LLSDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=77092 # 1epuA.509.536 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)Y509 (1epuA)P537 because C (cis) conformation "forbidden" or filtered. T0547 510 :FLGFFLVG 1epuA 538 :RLIIFVVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=77093 # 1gycA.509.195 read from T0547.t04.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)G512 (1gycA)R199 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1gycA)S204 because P (beta_P) conformation "forbidden" or filtered. T0547 509 :YFL 1gycA 196 :YRF T0547 513 :FFLV 1gycA 200 :LVSI Number of specific fragments extracted= 2 number of extra gaps= 2 total=77095 # 2bpa2.509.139 read from T0547.t04.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0547)G517 (2bpa2)S148 because Y (epsilon') conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 2bpa2 140 :VYVGFMVW Number of specific fragments extracted= 1 number of extra gaps= 1 total=77096 # 2fbeA.509.127 read from T0547.t04.many.frag # found chain 2fbeA in template set Warning: unaligning (T0547)G512 (2fbeA)G131 because P (beta_P) conformation "forbidden" or filtered. T0547 509 :YFL 2fbeA 128 :HRV T0547 513 :FFLVG 2fbeA 132 :IFLDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=77098 # 1bu6O.509.236 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)L515 (1bu6O)A243 because Y (epsilon') conformation "forbidden" or filtered. T0547 509 :YFLGFF 1bu6O 237 :IPISGI T0547 516 :VG 1bu6O 244 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=77100 # 1tyjA.509.85 read from T0547.t04.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)L511 (1tyjA)F89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1tyjA)N95 because N (gamma') conformation "forbidden" or filtered. T0547 509 :YF 1tyjA 87 :LN T0547 512 :GFFLV 1tyjA 90 :GRLYM Number of specific fragments extracted= 2 number of extra gaps= 2 total=77102 # 1hp1A.509.348 read from T0547.t04.many.frag # found chain 1hp1A in training set T0547 509 :YFLGFFLVG 1hp1A 383 :TNMGRLILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77103 # 1pgs.509.75 read from T0547.t04.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)G517 (1pgs)P84 because P (beta_P) conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 1pgs 76 :YEIGRFIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=77104 # 1l1lA.509.467 read from T0547.t04.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)Y509 (1l1lA)R468 because L (left) conformation "forbidden" or filtered. T0547 510 :FLGFFLVG 1l1lA 469 :RIGISMSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=77105 # 1hp1A.509.456 read from T0547.t04.many.frag # found chain 1hp1A in training set T0547 509 :YFLGFFLVG 1hp1A 491 :YRMATLNFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=77106 # 1xruA.509.78 read from T0547.t04.many.frag # found chain 1xruA in template set Warning: unaligning (T0547)V516 (1xruA)I83 because G (3-10) conformation "forbidden" or filtered. T0547 509 :YFLGFFL 1xruA 76 :RELGVIN T0547 517 :G 1xruA 84 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=77108 # 1khbA.509.280 read from T0547.t04.many.frag # found chain 1khbA in template set Warning: unaligning (T0547)G512 (1khbA)A281 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1khbA)S286 because P (beta_P) conformation "forbidden" or filtered. T0547 509 :YFL 1khbA 278 :KYL T0547 513 :FFLV 1khbA 282 :AAFP Number of specific fragments extracted= 2 number of extra gaps= 2 total=77110 # 1lml.509.138 read from T0547.t04.many.frag # found chain 1lml in template set Warning: unaligning (T0547)G517 (1lml)P246 because P (beta_P) conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 1lml 238 :PAVGVINI Number of specific fragments extracted= 1 number of extra gaps= 1 total=77111 # 1p3dA.509.367 read from T0547.t04.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)G512 (1p3dA)M371 because E (beta_S) conformation "forbidden" or filtered. T0547 509 :YFL 1p3dA 368 :RIV T0547 513 :FFLVG 1p3dA 372 :IFQPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=77113 # 1s3eA.509.310 read from T0547.t04.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)L511 (1s3eA)G313 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1s3eA)T314 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1s3eA)G319 because S (epsilon) conformation "forbidden" or filtered. T0547 509 :YF 1s3eA 311 :YC T0547 513 :FFLV 1s3eA 315 :MIID Number of specific fragments extracted= 2 number of extra gaps= 2 total=77115 # 2a6zA.509.192 read from T0547.t04.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)G512 (2a6zA)G201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (2a6zA)A204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (2a6zA)N206 because G (3-10) conformation "forbidden" or filtered. T0547 509 :YFL 2a6zA 198 :YRI T0547 513 :FF 2a6zA 202 :VT T0547 516 :V 2a6zA 205 :Q Number of specific fragments extracted= 3 number of extra gaps= 3 total=77118 # 1h6lA.509.85 read from T0547.t04.many.frag # found chain 1h6lA in training set T0547 509 :YFLGFFLVG 1h6lA 114 :VDIAAASNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=77119 # 2akaB.509.193 read from T0547.t04.many.frag # found chain 2akaB in template set T0547 509 :YFLGFFLVG 2akaB 199 :RTIGVITKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77120 # 1uc2A.509.343 read from T0547.t04.many.frag # found chain 1uc2A in template set T0547 509 :YFLGFFLVG 1uc2A 344 :VKVIVHRKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77121 # 1ohfA.509.149 read from T0547.t04.many.frag # found chain 1ohfA in template set Warning: unaligning (T0547)Y509 (1ohfA)W150 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (1ohfA)S156 because D (zeta) conformation "forbidden" or filtered. T0547 510 :FLGFF 1ohfA 151 :SLSII T0547 516 :VG 1ohfA 157 :YP Number of specific fragments extracted= 2 number of extra gaps= 2 total=77123 # 2bjqA.509.130 read from T0547.t04.many.frag # found chain 2bjqA in training set T0547 509 :YFLGFFLVG 2bjqA 131 :DLLGYIDMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77124 # 1w79A.509.48 read from T0547.t04.many.frag # found chain 1w79A in training set T0547 509 :YFLGFFLVG 1w79A 49 :SNMKLFTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77125 # 2amdA.509.203 read from T0547.t04.many.frag # found chain 2amdA in template set T0547 509 :YFLGFFLVG 2amdA 199 :TITLNVLAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=77126 # 1vkwA.509.180 read from T0547.t04.many.frag # found chain 1vkwA in template set T0547 509 :YFLGFFLVG 1vkwA 169 :VDLGIALSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=77127 # 1uteA.510.129 read from T0547.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)G517 (1uteA)D137 because D (zeta) conformation "forbidden" or filtered. T0547 510 :FLGFFLV 1uteA 130 :SVAIFML T0547 518 :A 1uteA 138 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=77129 # 1pot.510.200 read from T0547.t04.many.frag # found chain 1pot in training set Warning: unaligning (T0547)G512 (1pot)G226 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1pot)G231 because H (helix) conformation "forbidden" or filtered. T0547 510 :FL 1pot 224 :NL T0547 513 :FFLV 1pot 227 :MIWN T0547 518 :A 1pot 232 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=77132 # 1w96A.510.473 read from T0547.t04.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)G512 (1w96A)G488 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A518 (1w96A)N494 because P (beta_P) conformation "forbidden" or filtered. T0547 510 :FL 1w96A 486 :VW T0547 513 :FFLVG 1w96A 489 :YFSVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=77134 # 1tyjA.510.86 read from T0547.t04.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)L511 (1tyjA)F89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1tyjA)N95 because N (gamma') conformation "forbidden" or filtered. T0547 510 :F 1tyjA 88 :N T0547 512 :GFFLV 1tyjA 90 :GRLYM T0547 518 :A 1tyjA 96 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=77137 # 1gycA.510.196 read from T0547.t04.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)G512 (1gycA)R199 because D (zeta) conformation "forbidden" or filtered. T0547 510 :FL 1gycA 197 :RF T0547 513 :FFLVGA 1gycA 200 :LVSISC Number of specific fragments extracted= 2 number of extra gaps= 1 total=77139 # 1epuA.510.537 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)G512 (1epuA)I540 because P (beta_P) conformation "forbidden" or filtered. T0547 510 :FL 1epuA 538 :RL T0547 513 :FFLVGA 1epuA 541 :IFVVGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=77141 # 1kv7A.510.467 read from T0547.t04.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)G512 (1kv7A)A498 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F513 (1kv7A)H499 because Y (epsilon') conformation "forbidden" or filtered. T0547 510 :FL 1kv7A 496 :YM T0547 514 :FLVGA 1kv7A 500 :CHLLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=77143 # 1hp1A.510.349 read from T0547.t04.many.frag # found chain 1hp1A in training set T0547 510 :FLGFFLVGA 1hp1A 384 :NMGRLILAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77144 # 1euvA.510.115 read from T0547.t04.many.frag # found chain 1euvA in training set Warning: unaligning (T0547)G512 (1euvA)G518 because E (beta_S) conformation "forbidden" or filtered. T0547 510 :FL 1euvA 516 :AL T0547 513 :FFLVGA 1euvA 519 :IIDLKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=77146 # 1xruA.510.79 read from T0547.t04.many.frag # found chain 1xruA in template set Warning: unaligning (T0547)G512 (1xruA)G79 because E (beta_S) conformation "forbidden" or filtered. T0547 510 :FL 1xruA 77 :EL T0547 513 :FFLVGA 1xruA 80 :VINIGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=77148 # 1l1lA.510.468 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 510 :FLGFFLVGA 1l1lA 469 :RIGISMSGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77149 # 1bu6O.510.237 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)L515 (1bu6O)A243 because Y (epsilon') conformation "forbidden" or filtered. T0547 510 :FLGFF 1bu6O 238 :PISGI T0547 516 :VGA 1bu6O 244 :GDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=77151 # 1pgs.510.76 read from T0547.t04.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)G517 (1pgs)P84 because P (beta_P) conformation "forbidden" or filtered. T0547 510 :FLGFFLV 1pgs 77 :EIGRFIT T0547 518 :A 1pgs 85 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=77153 # 1p3dA.510.368 read from T0547.t04.many.frag # found chain 1p3dA in training set T0547 510 :FLGFFLVGA 1p3dA 369 :IVMIFQPHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=77154 # 2fbeA.510.128 read from T0547.t04.many.frag # found chain 2fbeA in template set T0547 510 :FLGFFLVGA 2fbeA 129 :RVGIFLDVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77155 # 1lml.510.139 read from T0547.t04.many.frag # found chain 1lml in template set T0547 510 :FLGFFLVGA 1lml 239 :AVGVINIPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77156 # 1w79A.510.49 read from T0547.t04.many.frag # found chain 1w79A in training set T0547 510 :FLGFFLVGA 1w79A 50 :NMKLFTAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77157 # 1q6zA.510.421 read from T0547.t04.many.frag # found chain 1q6zA in training set Warning: unaligning (T0547)L511 (1q6zA)I423 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1q6zA)A424 because P (beta_P) conformation "forbidden" or filtered. T0547 510 :F 1q6zA 422 :V T0547 513 :FFLVGA 1q6zA 425 :VIGDGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=77159 # 1otjA.510.125 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 510 :FLGFFLVGA 1otjA 126 :TLWTSGIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77160 # 2bpa2.510.140 read from T0547.t04.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0547)G517 (2bpa2)S148 because Y (epsilon') conformation "forbidden" or filtered. T0547 510 :FLGFFLV 2bpa2 141 :YVGFMVW T0547 518 :A 2bpa2 149 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=77162 # 1khbA.510.281 read from T0547.t04.many.frag # found chain 1khbA in template set Warning: unaligning (T0547)G512 (1khbA)A281 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1khbA)S286 because P (beta_P) conformation "forbidden" or filtered. T0547 510 :FL 1khbA 279 :YL T0547 513 :FFLV 1khbA 282 :AAFP T0547 518 :A 1khbA 287 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=77165 # 1ohfA.510.150 read from T0547.t04.many.frag # found chain 1ohfA in template set Warning: unaligning (T0547)G517 (1ohfA)P158 because N (gamma') conformation "forbidden" or filtered. T0547 510 :FLGFFLV 1ohfA 151 :SLSIISY T0547 518 :A 1ohfA 159 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=77167 # 2amdA.510.204 read from T0547.t04.many.frag # found chain 2amdA in template set T0547 510 :FLGFFLVGA 2amdA 200 :ITLNVLAWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77168 # 1qz8A.510.40 read from T0547.t04.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)G517 (1qz8A)H48 because P (beta_P) conformation "forbidden" or filtered. T0547 510 :FLGFFLV 1qz8A 41 :VLALLSD T0547 518 :A 1qz8A 49 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=77170 # 1s3eA.510.311 read from T0547.t04.many.frag # found chain 1s3eA in training set T0547 510 :FLGFFLVGA 1s3eA 312 :CGTMIIDGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77171 # 1tzpA.510.153 read from T0547.t04.many.frag # found chain 1tzpA in training set T0547 510 :FLGFFLVGA 1tzpA 173 :VTRIFVNPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77172 # 1cnv.510.258 read from T0547.t04.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)V516 because of BadResidue code BAD_PEPTIDE in next template residue (1cnv)N266 Warning: unaligning (T0547)G517 because of BadResidue code BAD_PEPTIDE at template residue (1cnv)N266 T0547 510 :FLGFFL 1cnv 259 :YAGIAL T0547 518 :A 1cnv 267 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=77174 # 1ypyA.510.143 read from T0547.t04.many.frag # found chain 1ypyA in training set T0547 510 :FLGFFLVGA 1ypyA 145 :NLEFINTGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77175 # 1uc2A.510.344 read from T0547.t04.many.frag # found chain 1uc2A in template set T0547 510 :FLGFFLVGA 1uc2A 345 :KVIVHRKGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77176 # 1ux6A.510.326 read from T0547.t04.many.frag # found chain 1ux6A in template set Warning: unaligning (T0547)G512 (1ux6A)G1131 because Y (epsilon') conformation "forbidden" or filtered. T0547 510 :FL 1ux6A 1129 :RL T0547 513 :FFLVGA 1ux6A 1132 :LFVFSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=77178 # 1uteA.511.130 read from T0547.t04.many.frag # found chain 1uteA in training set T0547 511 :LGFFLVGAY 1uteA 131 :VAIFMLDTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77179 # 1pot.511.201 read from T0547.t04.many.frag # found chain 1pot in training set T0547 511 :LGFFLVGAY 1pot 225 :LGMIWNGSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77180 # 1w96A.511.474 read from T0547.t04.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)G512 (1w96A)G488 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1w96A)G493 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A518 (1w96A)N494 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y519 (1w96A)N495 because L (left) conformation "forbidden" or filtered. T0547 511 :L 1w96A 487 :W T0547 513 :FFLV 1w96A 489 :YFSV Number of specific fragments extracted= 2 number of extra gaps= 2 total=77182 # 1hp1A.511.350 read from T0547.t04.many.frag # found chain 1hp1A in training set T0547 511 :LGFFLVGAY 1hp1A 385 :MGRLILAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=77183 # 1l1lA.511.469 read from T0547.t04.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)G512 (1l1lA)G471 because D (zeta) conformation "forbidden" or filtered. T0547 511 :L 1l1lA 470 :I T0547 513 :FFLVGAY 1l1lA 472 :ISMSGIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=77185 # 1khxA.511.197 read from T0547.t04.many.frag # found chain 1khxA in training set T0547 511 :LGFFLVGAY 1khxA 438 :IELHLNGPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77186 # 1w79A.511.50 read from T0547.t04.many.frag # found chain 1w79A in training set T0547 511 :LGFFLVGAY 1w79A 51 :MKLFTAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77187 # 1tyjA.511.87 read from T0547.t04.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)G517 (1tyjA)N95 because N (gamma') conformation "forbidden" or filtered. T0547 511 :LGFFLV 1tyjA 89 :FGRLYM T0547 518 :AY 1tyjA 96 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=77189 # 1cnv.511.259 read from T0547.t04.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)V516 because of BadResidue code BAD_PEPTIDE in next template residue (1cnv)N266 Warning: unaligning (T0547)G517 because of BadResidue code BAD_PEPTIDE at template residue (1cnv)N266 T0547 511 :LGFFL 1cnv 260 :AGIAL T0547 518 :AY 1cnv 267 :RQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=77191 # 1epuA.511.538 read from T0547.t04.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)A518 (1epuA)G546 because S (epsilon) conformation "forbidden" or filtered. T0547 511 :LGFFLVG 1epuA 539 :LIIFVVG T0547 519 :Y 1epuA 547 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=77193 # 2amdA.511.205 read from T0547.t04.many.frag # found chain 2amdA in template set T0547 511 :LGFFLVGAY 2amdA 201 :TLNVLAWLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=77194 # 1bu6O.511.238 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)G512 (1bu6O)S240 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (1bu6O)A243 because Y (epsilon') conformation "forbidden" or filtered. T0547 511 :L 1bu6O 239 :I T0547 513 :FF 1bu6O 241 :GI T0547 516 :VGAY 1bu6O 244 :GDQQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=77197 # 1p3dA.511.369 read from T0547.t04.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)G512 (1p3dA)M371 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1p3dA)H376 because E (beta_S) conformation "forbidden" or filtered. T0547 511 :L 1p3dA 370 :V T0547 513 :FFLV 1p3dA 372 :IFQP T0547 518 :AY 1p3dA 377 :RY Number of specific fragments extracted= 3 number of extra gaps= 2 total=77200 # 1obdA.511.121 read from T0547.t04.many.frag # found chain 1obdA in template set Warning: unaligning (T0547)V516 (1obdA)G127 because S (epsilon) conformation "forbidden" or filtered. T0547 511 :LGFFL 1obdA 122 :RGYIT T0547 517 :GAY 1obdA 128 :SAW Number of specific fragments extracted= 2 number of extra gaps= 1 total=77202 # 1tzpA.511.154 read from T0547.t04.many.frag # found chain 1tzpA in training set Warning: unaligning (T0547)G512 (1tzpA)R175 because E (beta_S) conformation "forbidden" or filtered. T0547 511 :L 1tzpA 174 :T T0547 513 :FFLVGAY 1tzpA 176 :IFVNPAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=77204 # 1kv7A.511.468 read from T0547.t04.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)G512 (1kv7A)A498 because E (beta_S) conformation "forbidden" or filtered. T0547 511 :L 1kv7A 497 :M T0547 513 :FFLVGAY 1kv7A 499 :HCHLLEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=77206 # 1xruA.511.80 read from T0547.t04.many.frag # found chain 1xruA in template set Warning: unaligning (T0547)G512 (1xruA)G79 because E (beta_S) conformation "forbidden" or filtered. T0547 511 :L 1xruA 78 :L T0547 513 :FFLVGAY 1xruA 80 :VINIGGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=77208 # 1lml.511.140 read from T0547.t04.many.frag # found chain 1lml in template set T0547 511 :LGFFLVGAY 1lml 240 :VGVINIPAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77209 # 1tl9A.511.161 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 511 :LGFFLVGAY 1tl9A 187 :WSALLEKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=77210 # 1pgs.511.77 read from T0547.t04.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)Y519 (1pgs)W86 because T (delta_L) conformation "forbidden" or filtered. T0547 511 :LGFFLVGA 1pgs 78 :IGRFITPY Number of specific fragments extracted= 1 number of extra gaps= 1 total=77211 # 1otjA.511.126 read from T0547.t04.many.frag # found chain 1otjA in template set Warning: unaligning (T0547)G512 (1otjA)W128 because E (beta_S) conformation "forbidden" or filtered. T0547 511 :L 1otjA 127 :L T0547 513 :FFLVGAY 1otjA 129 :TSGIAAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=77213 # 1zkdA.511.294 read from T0547.t04.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)G512 (1zkdA)G296 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F513 (1zkdA)P297 because C (cis) conformation "forbidden" or filtered. T0547 511 :L 1zkdA 295 :H T0547 514 :FLVGAY 1zkdA 298 :VTQGAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=77215 # 1q6zA.511.422 read from T0547.t04.many.frag # found chain 1q6zA in training set Warning: unaligning (T0547)G517 (1q6zA)G429 because H (helix) conformation "forbidden" or filtered. T0547 511 :LGFFLV 1q6zA 423 :IAVIGD T0547 518 :AY 1q6zA 430 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=77217 # 1rp0A.511.233 read from T0547.t04.many.frag # found chain 1rp0A in training set T0547 511 :LGFFLVGAY 1rp0A 234 :PGMIVTGME Number of specific fragments extracted= 1 number of extra gaps= 0 total=77218 # 1ujpA.511.223 read from T0547.t04.many.frag # found chain 1ujpA in training set T0547 511 :LGFFLVGAY 1ujpA 224 :DGVVVGSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77219 # 1gycA.511.197 read from T0547.t04.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)G517 (1gycA)S204 because P (beta_P) conformation "forbidden" or filtered. T0547 511 :LGFFLV 1gycA 198 :FRLVSI T0547 518 :AY 1gycA 205 :CD Number of specific fragments extracted= 2 number of extra gaps= 1 total=77221 # 1obdA.511.120 read from T0547.t04.many.frag # found chain 1obdA in template set T0547 511 :LGFFLVGAY 1obdA 121 :VRGYITGSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77222 # 1ux6A.511.327 read from T0547.t04.many.frag # found chain 1ux6A in template set Warning: unaligning (T0547)G512 (1ux6A)G1131 because Y (epsilon') conformation "forbidden" or filtered. T0547 511 :L 1ux6A 1130 :L T0547 513 :FFLVGAY 1ux6A 1132 :LFVFSQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=77224 # 1s3eA.511.312 read from T0547.t04.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)G512 (1s3eA)T314 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1s3eA)G319 because S (epsilon) conformation "forbidden" or filtered. T0547 511 :L 1s3eA 313 :G T0547 513 :FFLV 1s3eA 315 :MIID T0547 518 :AY 1s3eA 320 :EE Number of specific fragments extracted= 3 number of extra gaps= 2 total=77227 # 1ypyA.511.144 read from T0547.t04.many.frag # found chain 1ypyA in training set T0547 511 :LGFFLVGAY 1ypyA 146 :LEFINTGSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77228 # 1pot.512.202 read from T0547.t04.many.frag # found chain 1pot in training set Warning: unaligning (T0547)G517 (1pot)G231 because H (helix) conformation "forbidden" or filtered. T0547 512 :GFFLV 1pot 226 :GMIWN T0547 518 :AYQ 1pot 232 :SAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=77230 # 1w79A.512.51 read from T0547.t04.many.frag # found chain 1w79A in training set T0547 512 :GFFLVGAYQ 1w79A 52 :KLFTAAAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77231 # 1tl9A.512.162 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 512 :GFFLVGAYQ 1tl9A 188 :SALLEKAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77232 # 1uteA.512.131 read from T0547.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)G517 (1uteA)D137 because D (zeta) conformation "forbidden" or filtered. T0547 512 :GFFLV 1uteA 132 :AIFML T0547 518 :AYQ 1uteA 138 :TVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=77234 # 1khxA.512.198 read from T0547.t04.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)G517 (1khxA)G444 because H (helix) conformation "forbidden" or filtered. T0547 512 :GFFLV 1khxA 439 :ELHLN T0547 518 :AYQ 1khxA 445 :PLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=77236 # 2amdA.512.206 read from T0547.t04.many.frag # found chain 2amdA in template set T0547 512 :GFFLVGAYQ 2amdA 202 :LNVLAWLYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77237 # 1hp1A.512.351 read from T0547.t04.many.frag # found chain 1hp1A in training set T0547 512 :GFFLVGAYQ 1hp1A 386 :GRLILAAQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=77238 # 1zkdA.512.295 read from T0547.t04.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)F513 (1zkdA)P297 because C (cis) conformation "forbidden" or filtered. T0547 512 :G 1zkdA 296 :G T0547 514 :FLVGAYQ 1zkdA 298 :VTQGAFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77240 # 1l1lA.512.470 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 512 :GFFLVGAYQ 1l1lA 471 :GISMSGIQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=77241 # 1bu6O.512.239 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)G512 (1bu6O)S240 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (1bu6O)A243 because Y (epsilon') conformation "forbidden" or filtered. T0547 513 :FF 1bu6O 241 :GI T0547 516 :VGAYQ 1bu6O 244 :GDQQA Number of specific fragments extracted= 2 number of extra gaps= 2 total=77243 # 1obdA.512.122 read from T0547.t04.many.frag # found chain 1obdA in template set Warning: unaligning (T0547)L515 (1obdA)T126 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V516 (1obdA)G127 because S (epsilon) conformation "forbidden" or filtered. T0547 512 :GFF 1obdA 123 :GYI T0547 517 :GAYQ 1obdA 128 :SAWK Number of specific fragments extracted= 2 number of extra gaps= 1 total=77245 # 1tzpA.512.155 read from T0547.t04.many.frag # found chain 1tzpA in training set T0547 512 :GFFLVGAYQ 1tzpA 175 :RIFVNPAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=77246 # 1ujpA.512.224 read from T0547.t04.many.frag # found chain 1ujpA in training set Warning: unaligning (T0547)G512 (1ujpA)G225 because E (beta_S) conformation "forbidden" or filtered. T0547 513 :FFLVGAYQ 1ujpA 226 :VVVGSALV Number of specific fragments extracted= 1 number of extra gaps= 1 total=77247 # 1obdA.512.121 read from T0547.t04.many.frag # found chain 1obdA in template set T0547 512 :GFFLVGAYQ 1obdA 122 :RGYITGSAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=77248 # 1cnv.512.260 read from T0547.t04.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)V516 because of BadResidue code BAD_PEPTIDE in next template residue (1cnv)N266 Warning: unaligning (T0547)G517 because of BadResidue code BAD_PEPTIDE at template residue (1cnv)N266 T0547 512 :GFFL 1cnv 261 :GIAL T0547 518 :AYQ 1cnv 267 :RQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=77250 # 1rp0A.512.234 read from T0547.t04.many.frag # found chain 1rp0A in training set T0547 512 :GFFLVGAYQ 1rp0A 235 :GMIVTGMEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77251 # 1rlr.512.515 read from T0547.t04.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)F513 because of BadResidue code BAD_PEPTIDE in next template residue (1rlr)I518 Warning: unaligning (T0547)F514 because of BadResidue code BAD_PEPTIDE at template residue (1rlr)I518 Warning: unaligning (T0547)L515 (1rlr)N519 because L (left) conformation "forbidden" or filtered. T0547 512 :G 1rlr 516 :G T0547 516 :VGAYQ 1rlr 520 :FAYYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77253 # 1epuA.512.539 read from T0547.t04.many.frag # found chain 1epuA in template set T0547 512 :GFFLVGAYQ 1epuA 540 :IIFVVGGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77254 # 1lam.512.356 read from T0547.t04.many.frag # found chain 1lam in training set Warning: unaligning (T0547)G512 (1lam)A357 because E (beta_S) conformation "forbidden" or filtered. T0547 513 :FFLVGAYQ 1lam 358 :ATLTGAMD Number of specific fragments extracted= 1 number of extra gaps= 1 total=77255 # 1otjA.512.127 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 512 :GFFLVGAYQ 1otjA 128 :WTSGIAAYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77256 # 1tn6A.512.311 read from T0547.t04.many.frag # found chain 1tn6A in template set T0547 512 :GFFLVGAYQ 1tn6A 312 :IAFLVDIYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77257 # 1vkwA.512.183 read from T0547.t04.many.frag # found chain 1vkwA in template set T0547 512 :GFFLVGAYQ 1vkwA 172 :GIALSHAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77258 # 1p3dA.512.370 read from T0547.t04.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)G512 (1p3dA)M371 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1p3dA)H376 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A518 (1p3dA)R377 because S (epsilon) conformation "forbidden" or filtered. T0547 513 :FFLV 1p3dA 372 :IFQP T0547 519 :YQ 1p3dA 378 :YS Number of specific fragments extracted= 2 number of extra gaps= 2 total=77260 # 1kv7A.512.469 read from T0547.t04.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)G512 (1kv7A)A498 because E (beta_S) conformation "forbidden" or filtered. T0547 513 :FFLVGAYQ 1kv7A 499 :HCHLLEHE Number of specific fragments extracted= 1 number of extra gaps= 1 total=77261 # 1su8A.512.562 read from T0547.t04.many.frag # found chain 1su8A in training set T0547 512 :GFFLVGAYQ 1su8A 563 :KAVAIGTWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77262 # 1t3tA.512.1138 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)L515 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t3tA)N1136 Warning: unaligning (T0547)G517 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3tA)N1136 T0547 512 :GFF 1t3tA 1131 :ALG T0547 518 :AYQ 1t3tA 1137 :GCQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=77264 # 1usyA.512.127 read from T0547.t04.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)G512 (1usyA)E128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F514 (1usyA)G130 because Y (epsilon') conformation "forbidden" or filtered. T0547 513 :F 1usyA 129 :I T0547 515 :LVGAYQ 1usyA 131 :HTGVYE Number of specific fragments extracted= 2 number of extra gaps= 2 total=77266 # 1w96A.512.475 read from T0547.t04.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)G517 (1w96A)G493 because N (gamma') conformation "forbidden" or filtered. T0547 512 :GFFLV 1w96A 488 :GYFSV T0547 518 :AYQ 1w96A 494 :NNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=77268 # 1uocA.512.195 read from T0547.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)G512 (1uocA)N196 because D (zeta) conformation "forbidden" or filtered. T0547 513 :FFLVGAYQ 1uocA 197 :FYDLNLVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=77269 # 1fiuA.512.239 read from T0547.t04.many.frag # found chain 1fiuA in training set Warning: unaligning (T0547)G512 (1fiuA)C240 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1fiuA)A245 because D (zeta) conformation "forbidden" or filtered. T0547 513 :FFLV 1fiuA 241 :VYHF T0547 518 :AYQ 1fiuA 246 :LYE Number of specific fragments extracted= 2 number of extra gaps= 2 total=77271 # 1tl9A.513.163 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 513 :FFLVGAYQE 1tl9A 189 :ALLEKAYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=77272 # 1w79A.513.52 read from T0547.t04.many.frag # found chain 1w79A in training set T0547 513 :FFLVGAYQE 1w79A 53 :LFTAAAALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77273 # 2amdA.513.207 read from T0547.t04.many.frag # found chain 2amdA in template set T0547 513 :FFLVGAYQE 2amdA 203 :NVLAWLYAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77274 # 1pot.513.203 read from T0547.t04.many.frag # found chain 1pot in training set T0547 513 :FFLVGAYQE 1pot 227 :MIWNGSAFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77275 # 1zkdA.513.296 read from T0547.t04.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)F513 (1zkdA)P297 because C (cis) conformation "forbidden" or filtered. T0547 514 :FLVGAYQE 1zkdA 298 :VTQGAFLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=77276 # 1hp1A.513.352 read from T0547.t04.many.frag # found chain 1hp1A in training set T0547 513 :FFLVGAYQE 1hp1A 387 :RLILAAQMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=77277 # 1obdA.513.123 read from T0547.t04.many.frag # found chain 1obdA in template set Warning: unaligning (T0547)V516 (1obdA)G127 because S (epsilon) conformation "forbidden" or filtered. T0547 513 :FFL 1obdA 124 :YIT T0547 517 :GAYQE 1obdA 128 :SAWKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=77279 # 1bu6O.513.240 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)L515 (1bu6O)A243 because Y (epsilon') conformation "forbidden" or filtered. T0547 513 :FF 1bu6O 241 :GI T0547 516 :VGAYQE 1bu6O 244 :GDQQAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=77281 # 1l1lA.513.471 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 513 :FFLVGAYQE 1l1lA 472 :ISMSGIQDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=77282 # 1lam.513.357 read from T0547.t04.many.frag # found chain 1lam in training set Warning: unaligning (T0547)G517 (1lam)G362 because H (helix) conformation "forbidden" or filtered. T0547 513 :FFLV 1lam 358 :ATLT T0547 518 :AYQE 1lam 363 :AMDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=77284 # 1obdA.513.122 read from T0547.t04.many.frag # found chain 1obdA in template set T0547 513 :FFLVGAYQE 1obdA 123 :GYITGSAWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=77285 # 1khxA.513.199 read from T0547.t04.many.frag # found chain 1khxA in training set T0547 513 :FFLVGAYQE 1khxA 440 :LHLNGPLQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=77286 # 1tzpA.513.156 read from T0547.t04.many.frag # found chain 1tzpA in training set T0547 513 :FFLVGAYQE 1tzpA 176 :IFVNPAIKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=77287 # 1ujpA.513.225 read from T0547.t04.many.frag # found chain 1ujpA in training set Warning: unaligning (T0547)L515 (1ujpA)V228 because D (zeta) conformation "forbidden" or filtered. T0547 513 :FF 1ujpA 226 :VV T0547 516 :VGAYQE 1ujpA 229 :GSALVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=77289 # 1rp0A.513.235 read from T0547.t04.many.frag # found chain 1rp0A in training set T0547 513 :FFLVGAYQE 1rp0A 236 :MIVTGMEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77290 # 1rlr.513.516 read from T0547.t04.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)F513 because of BadResidue code BAD_PEPTIDE in next template residue (1rlr)I518 Warning: unaligning (T0547)F514 because of BadResidue code BAD_PEPTIDE at template residue (1rlr)I518 Warning: unaligning (T0547)L515 (1rlr)N519 because L (left) conformation "forbidden" or filtered. T0547 516 :VGAYQE 1rlr 520 :FAYYLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=77291 # 1tn6A.513.312 read from T0547.t04.many.frag # found chain 1tn6A in template set T0547 513 :FFLVGAYQE 1tn6A 313 :AFLVDIYED Number of specific fragments extracted= 1 number of extra gaps= 0 total=77292 # 1uocA.513.196 read from T0547.t04.many.frag # found chain 1uocA in template set T0547 513 :FFLVGAYQE 1uocA 197 :FYDLNLVYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=77293 # 1su8A.513.563 read from T0547.t04.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)G517 (1su8A)G568 because H (helix) conformation "forbidden" or filtered. T0547 513 :FFLV 1su8A 564 :AVAI T0547 518 :AYQE 1su8A 569 :TWAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=77295 # 1t3tA.513.1139 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)L515 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t3tA)N1136 Warning: unaligning (T0547)G517 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3tA)N1136 T0547 513 :FF 1t3tA 1132 :LG T0547 518 :AYQE 1t3tA 1137 :GCQM Number of specific fragments extracted= 2 number of extra gaps= 0 total=77297 # 1vkwA.513.184 read from T0547.t04.many.frag # found chain 1vkwA in template set T0547 513 :FFLVGAYQE 1vkwA 173 :IALSHAYLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77298 # 1usyA.513.128 read from T0547.t04.many.frag # found chain 1usyA in template set T0547 513 :FFLVGAYQE 1usyA 129 :IGHTGVYED Number of specific fragments extracted= 1 number of extra gaps= 0 total=77299 # 1cnv.513.261 read from T0547.t04.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)V516 because of BadResidue code BAD_PEPTIDE in next template residue (1cnv)N266 Warning: unaligning (T0547)G517 because of BadResidue code BAD_PEPTIDE at template residue (1cnv)N266 T0547 513 :FFL 1cnv 262 :IAL T0547 518 :AYQE 1cnv 267 :RQAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=77301 # 2fbwB.513.181 read from T0547.t04.many.frag # found chain 2fbwB in template set T0547 513 :FFLVGAYQE 2fbwB 182 :AVLMQAYRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=77302 # 1otjA.513.128 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 513 :FFLVGAYQE 1otjA 129 :TSGIAAYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77303 # 1um0A.513.131 read from T0547.t04.many.frag # found chain 1um0A in template set T0547 513 :FFLVGAYQE 1um0A 132 :RVAAGAFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=77304 # 1uteA.513.132 read from T0547.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)G517 (1uteA)D137 because D (zeta) conformation "forbidden" or filtered. T0547 513 :FFLV 1uteA 133 :IFML T0547 518 :AYQE 1uteA 138 :TVTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77306 # 1mugA.513.105 read from T0547.t04.many.frag # found chain 1mugA in training set Warning: unaligning (T0547)L515 (1mugA)G108 because Y (epsilon') conformation "forbidden" or filtered. T0547 513 :FF 1mugA 106 :IL T0547 516 :VGAYQE 1mugA 109 :KQAYEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=77308 # 1qqfA.513.135 read from T0547.t04.many.frag # found chain 1qqfA in training set T0547 513 :FFLVGAYQE 1qqfA 1145 :AFVLIALQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77309 # 1kv7A.513.470 read from T0547.t04.many.frag # found chain 1kv7A in training set T0547 513 :FFLVGAYQE 1kv7A 499 :HCHLLEHED Number of specific fragments extracted= 1 number of extra gaps= 0 total=77310 # 1tl9A.514.164 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 514 :FLVGAYQEV 1tl9A 190 :LLEKAYAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77311 # 1w79A.514.53 read from T0547.t04.many.frag # found chain 1w79A in training set T0547 514 :FLVGAYQEV 1w79A 54 :FTAAAALEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77312 # 2amdA.514.208 read from T0547.t04.many.frag # found chain 2amdA in template set T0547 514 :FLVGAYQEV 2amdA 204 :VLAWLYAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77313 # 1hp1A.514.353 read from T0547.t04.many.frag # found chain 1hp1A in training set T0547 514 :FLVGAYQEV 1hp1A 388 :LILAAQMDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=77314 # 1zkdA.514.297 read from T0547.t04.many.frag # found chain 1zkdA in template set T0547 514 :FLVGAYQEV 1zkdA 298 :VTQGAFLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=77315 # 1l1lA.514.472 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 514 :FLVGAYQEV 1l1lA 473 :SMSGIQDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77316 # 1pot.514.204 read from T0547.t04.many.frag # found chain 1pot in training set Warning: unaligning (T0547)G517 (1pot)G231 because H (helix) conformation "forbidden" or filtered. T0547 514 :FLV 1pot 228 :IWN T0547 518 :AYQEV 1pot 232 :SAFVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=77318 # 1bu6O.514.241 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)L515 (1bu6O)A243 because Y (epsilon') conformation "forbidden" or filtered. T0547 514 :F 1bu6O 242 :I T0547 516 :VGAYQEV 1bu6O 244 :GDQQAAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77320 # 1lam.514.358 read from T0547.t04.many.frag # found chain 1lam in training set T0547 514 :FLVGAYQEV 1lam 359 :TLTGAMDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77321 # 1su8A.514.564 read from T0547.t04.many.frag # found chain 1su8A in training set T0547 514 :FLVGAYQEV 1su8A 565 :VAIGTWAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77322 # 1obdA.514.124 read from T0547.t04.many.frag # found chain 1obdA in template set T0547 514 :FLVGAYQEV 1obdA 125 :ITGSAWKEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=77323 # 1tn6A.514.313 read from T0547.t04.many.frag # found chain 1tn6A in template set T0547 514 :FLVGAYQEV 1tn6A 314 :FLVDIYEDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=77324 # 1uocA.514.197 read from T0547.t04.many.frag # found chain 1uocA in template set T0547 514 :FLVGAYQEV 1uocA 198 :YDLNLVYKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77325 # 1rp0A.514.236 read from T0547.t04.many.frag # found chain 1rp0A in training set T0547 514 :FLVGAYQEV 1rp0A 237 :IVTGMEVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77326 # 1tzpA.514.157 read from T0547.t04.many.frag # found chain 1tzpA in training set T0547 514 :FLVGAYQEV 1tzpA 177 :FVNPAIKQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=77327 # 1obdA.514.123 read from T0547.t04.many.frag # found chain 1obdA in template set T0547 514 :FLVGAYQEV 1obdA 124 :YITGSAWKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77328 # 1rlr.514.517 read from T0547.t04.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)F514 because of BadResidue code BAD_PEPTIDE at template residue (1rlr)I518 T0547 515 :LVGAYQEV 1rlr 519 :NFAYYLAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=77329 # 1ujpA.514.226 read from T0547.t04.many.frag # found chain 1ujpA in training set T0547 514 :FLVGAYQEV 1ujpA 227 :VVGSALVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77330 # 1t3tA.514.1140 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)L515 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t3tA)N1136 Warning: unaligning (T0547)G517 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3tA)N1136 T0547 514 :F 1t3tA 1133 :G T0547 518 :AYQEV 1t3tA 1137 :GCQMM Number of specific fragments extracted= 2 number of extra gaps= 0 total=77332 # 1usyA.514.129 read from T0547.t04.many.frag # found chain 1usyA in template set T0547 514 :FLVGAYQEV 1usyA 130 :GHTGVYEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77333 # 1um0A.514.132 read from T0547.t04.many.frag # found chain 1um0A in template set T0547 514 :FLVGAYQEV 1um0A 133 :VAAGAFAKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=77334 # 1v4aA.514.327 read from T0547.t04.many.frag # found chain 1v4aA in template set T0547 514 :FLVGAYQEV 1v4aA 328 :FIVQVFQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77335 # 1vkwA.514.185 read from T0547.t04.many.frag # found chain 1vkwA in template set T0547 514 :FLVGAYQEV 1vkwA 174 :ALSHAYLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77336 # 1mkaA.514.87 read from T0547.t04.many.frag # found chain 1mkaA in template set T0547 514 :FLVGAYQEV 1mkaA 88 :QLVGFYLGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=77337 # 1mugA.514.106 read from T0547.t04.many.frag # found chain 1mugA in training set Warning: unaligning (T0547)L515 (1mugA)G108 because Y (epsilon') conformation "forbidden" or filtered. T0547 514 :F 1mugA 107 :L T0547 516 :VGAYQEV 1mugA 109 :KQAYEQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=77339 # 1khxA.514.200 read from T0547.t04.many.frag # found chain 1khxA in training set T0547 514 :FLVGAYQEV 1khxA 441 :HLNGPLQWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77340 # 2fbwB.514.182 read from T0547.t04.many.frag # found chain 2fbwB in template set T0547 514 :FLVGAYQEV 2fbwB 183 :VLMQAYRWM Number of specific fragments extracted= 1 number of extra gaps= 0 total=77341 # 1qqfA.514.136 read from T0547.t04.many.frag # found chain 1qqfA in training set T0547 514 :FLVGAYQEV 1qqfA 1146 :FVLIALQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77342 # 1kwgA.514.294 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 514 :FLVGAYQEV 1kwgA 295 :FHHDLYRGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77343 # 1t6eX.514.346 read from T0547.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)V522 because of BadResidue code BAD_PEPTIDE in next template residue (1t6eX)F356 T0547 514 :FLVGAYQE 1t6eX 347 :ILGGAQME Number of specific fragments extracted= 1 number of extra gaps= 1 total=77344 # 1tl9A.515.165 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 515 :LVGAYQEVL 1tl9A 191 :LEKAYAKVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=77345 # 1w79A.515.54 read from T0547.t04.many.frag # found chain 1w79A in training set T0547 515 :LVGAYQEVL 1w79A 55 :TAAAALEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77346 # 2amdA.515.209 read from T0547.t04.many.frag # found chain 2amdA in template set T0547 515 :LVGAYQEVL 2amdA 205 :LAWLYAAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77347 # 1zkdA.515.298 read from T0547.t04.many.frag # found chain 1zkdA in template set T0547 515 :LVGAYQEVL 1zkdA 299 :TQGAFLKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77348 # 1hp1A.515.354 read from T0547.t04.many.frag # found chain 1hp1A in training set T0547 515 :LVGAYQEVL 1hp1A 389 :ILAAQMDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77349 # 1l1lA.515.473 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 515 :LVGAYQEVL 1l1lA 474 :MSGIQDWLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77350 # 1bu6O.515.242 read from T0547.t04.many.frag # found chain 1bu6O in template set T0547 515 :LVGAYQEVL 1bu6O 243 :AGDQQAALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=77351 # 1su8A.515.565 read from T0547.t04.many.frag # found chain 1su8A in training set T0547 515 :LVGAYQEVL 1su8A 566 :AIGTWAVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77352 # 1uocA.515.198 read from T0547.t04.many.frag # found chain 1uocA in template set T0547 515 :LVGAYQEVL 1uocA 199 :DLNLVYKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=77353 # 1pot.515.205 read from T0547.t04.many.frag # found chain 1pot in training set T0547 515 :LVGAYQEVL 1pot 229 :WNGSAFVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=77354 # 1lam.515.359 read from T0547.t04.many.frag # found chain 1lam in training set T0547 515 :LVGAYQEVL 1lam 360 :LTGAMDIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77355 # 1v4aA.515.328 read from T0547.t04.many.frag # found chain 1v4aA in template set T0547 515 :LVGAYQEVL 1v4aA 329 :IVQVFQLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=77356 # 1tn6A.515.314 read from T0547.t04.many.frag # found chain 1tn6A in template set T0547 515 :LVGAYQEVL 1tn6A 315 :LVDIYEDML Number of specific fragments extracted= 1 number of extra gaps= 0 total=77357 # 1usyA.515.130 read from T0547.t04.many.frag # found chain 1usyA in template set T0547 515 :LVGAYQEVL 1usyA 131 :HTGVYEDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77358 # 1rlr.515.518 read from T0547.t04.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)V522 (1rlr)K526 because G (3-10) conformation "forbidden" or filtered. T0547 515 :LVGAYQE 1rlr 519 :NFAYYLA T0547 523 :L 1rlr 527 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=77360 # 1mkaA.515.88 read from T0547.t04.many.frag # found chain 1mkaA in template set Warning: unaligning (T0547)G517 (1mkaA)G91 because H (helix) conformation "forbidden" or filtered. T0547 515 :LV 1mkaA 89 :LV T0547 518 :AYQEVL 1mkaA 92 :FYLGWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77362 # 1um0A.515.133 read from T0547.t04.many.frag # found chain 1um0A in template set T0547 515 :LVGAYQEVL 1um0A 134 :AAGAFAKML Number of specific fragments extracted= 1 number of extra gaps= 0 total=77363 # 1t3tA.515.1141 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)L515 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t3tA)N1136 Warning: unaligning (T0547)G517 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3tA)N1136 T0547 518 :AYQEVL 1t3tA 1137 :GCQMMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77364 # 1tzpA.515.158 read from T0547.t04.many.frag # found chain 1tzpA in training set T0547 515 :LVGAYQEVL 1tzpA 178 :VNPAIKQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77365 # 1vkwA.515.186 read from T0547.t04.many.frag # found chain 1vkwA in template set T0547 515 :LVGAYQEVL 1vkwA 175 :LSHAYLTAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=77366 # 1mugA.515.107 read from T0547.t04.many.frag # found chain 1mugA in training set Warning: unaligning (T0547)L515 (1mugA)G108 because Y (epsilon') conformation "forbidden" or filtered. T0547 516 :VGAYQEVL 1mugA 109 :KQAYEQGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=77367 # 2fbwB.515.183 read from T0547.t04.many.frag # found chain 2fbwB in template set T0547 515 :LVGAYQEVL 2fbwB 184 :LMQAYRWMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77368 # 1rp0A.515.237 read from T0547.t04.many.frag # found chain 1rp0A in training set T0547 515 :LVGAYQEVL 1rp0A 238 :VTGMEVAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77369 # 1kwgA.515.295 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 515 :LVGAYQEVL 1kwgA 296 :HHDLYRGVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77370 # 1qqfA.515.137 read from T0547.t04.many.frag # found chain 1qqfA in training set T0547 515 :LVGAYQEVL 1qqfA 1147 :VLIALQEAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=77371 # 1obdA.515.125 read from T0547.t04.many.frag # found chain 1obdA in template set Warning: unaligning (T0547)L515 (1obdA)T126 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V516 (1obdA)G127 because S (epsilon) conformation "forbidden" or filtered. T0547 517 :GAYQEVL 1obdA 128 :SAWKEYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=77372 # 1ltzA.515.132 read from T0547.t04.many.frag # found chain 1ltzA in training set T0547 515 :LVGAYQEVL 1ltzA 133 :EPDVFHDLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=77373 # 1zupA.515.257 read from T0547.t04.many.frag # found chain 1zupA in template set T0547 515 :LVGAYQEVL 1zupA 246 :IRKVFDDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77374 # 1dmhA.515.203 read from T0547.t04.many.frag # found chain 1dmhA in training set T0547 515 :LVGAYQEVL 1dmhA 204 :PEGPTQQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77375 2fiyA expands to /projects/compbio/data/pdb/2fiy.pdb.gz 2fiyA:# 2fiyA.515.272 read from T0547.t04.many.frag # adding 2fiyA to template set # found chain 2fiyA in template set T0547 515 :LVGAYQEVL 2fiyA 273 :HADALADDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77376 # 1tl9A.516.166 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 516 :VGAYQEVLG 1tl9A 192 :EKAYAKVNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77377 # 1w79A.516.55 read from T0547.t04.many.frag # found chain 1w79A in training set Warning: unaligning (T0547)G524 (1w79A)G64 because S (epsilon) conformation "forbidden" or filtered. T0547 516 :VGAYQEVL 1w79A 56 :AAAALEVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=77378 # 2amdA.516.210 read from T0547.t04.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)G524 (2amdA)N214 because G (3-10) conformation "forbidden" or filtered. T0547 516 :VGAYQEVL 2amdA 206 :AWLYAAVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=77379 # 1zkdA.516.299 read from T0547.t04.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)G517 (1zkdA)G301 because H (helix) conformation "forbidden" or filtered. T0547 516 :V 1zkdA 300 :Q T0547 518 :AYQEVLG 1zkdA 302 :AFLKRLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=77381 # 1hp1A.516.355 read from T0547.t04.many.frag # found chain 1hp1A in training set T0547 516 :VGAYQEVLG 1hp1A 390 :LAAQMDRTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77382 # 1su8A.516.566 read from T0547.t04.many.frag # found chain 1su8A in training set T0547 516 :VGAYQEVLG 1su8A 567 :IGTWAVTIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77383 # 1uocA.516.199 read from T0547.t04.many.frag # found chain 1uocA in template set T0547 516 :VGAYQEVLG 1uocA 200 :LNLVYKIIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=77384 # 1bu6O.516.243 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)G524 (1bu6O)G252 because H (helix) conformation "forbidden" or filtered. T0547 516 :VGAYQEVL 1bu6O 244 :GDQQAALF Number of specific fragments extracted= 1 number of extra gaps= 1 total=77385 # 1tn6A.516.315 read from T0547.t04.many.frag # found chain 1tn6A in template set T0547 516 :VGAYQEVLG 1tn6A 316 :VDIYEDMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77386 # 1v4aA.516.329 read from T0547.t04.many.frag # found chain 1v4aA in template set T0547 516 :VGAYQEVLG 1v4aA 330 :VQVFQLIRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77387 # 1mkaA.516.89 read from T0547.t04.many.frag # found chain 1mkaA in template set T0547 516 :VGAYQEVLG 1mkaA 90 :VGFYLGWLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77388 # 1l1lA.516.474 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 516 :VGAYQEVLG 1l1lA 475 :SGIQDWLLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77389 # 1um0A.516.134 read from T0547.t04.many.frag # found chain 1um0A in template set T0547 516 :VGAYQEVLG 1um0A 135 :AGAFAKMLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77390 # 1rlr.516.519 read from T0547.t04.many.frag # found chain 1rlr in template set T0547 516 :VGAYQEVLG 1rlr 520 :FAYYLAKHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77391 # 1lam.516.360 read from T0547.t04.many.frag # found chain 1lam in training set T0547 516 :VGAYQEVLG 1lam 361 :TGAMDIALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77392 # 1ltzA.516.133 read from T0547.t04.many.frag # found chain 1ltzA in training set Warning: unaligning (T0547)G517 (1ltzA)D135 because Y (epsilon') conformation "forbidden" or filtered. T0547 516 :V 1ltzA 134 :P T0547 518 :AYQEVLG 1ltzA 136 :VFHDLFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=77394 # 1usyA.516.131 read from T0547.t04.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)G517 (1usyA)G133 because H (helix) conformation "forbidden" or filtered. T0547 516 :V 1usyA 132 :T T0547 518 :AYQEVLG 1usyA 134 :VYEDLLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=77396 # 2fbwB.516.184 read from T0547.t04.many.frag # found chain 2fbwB in template set Warning: unaligning (T0547)G524 (2fbwB)D193 because P (beta_P) conformation "forbidden" or filtered. T0547 516 :VGAYQEVL 2fbwB 185 :MQAYRWMI Number of specific fragments extracted= 1 number of extra gaps= 1 total=77397 # 1t3tA.516.1142 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)G517 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3tA)N1136 T0547 518 :AYQEVLG 1t3tA 1137 :GCQMMSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=77398 # 1dmhA.516.204 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)G517 (1dmhA)G206 because P (beta_P) conformation "forbidden" or filtered. T0547 516 :V 1dmhA 205 :E T0547 518 :AYQEVLG 1dmhA 207 :PTQQLLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=77400 # 1mugA.516.108 read from T0547.t04.many.frag # found chain 1mugA in training set T0547 516 :VGAYQEVLG 1mugA 109 :KQAYEQGFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77401 # 1kwgA.516.296 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 516 :VGAYQEVLG 1kwgA 297 :HDLYRGVGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=77402 # 1zupA.516.258 read from T0547.t04.many.frag # found chain 1zupA in template set T0547 516 :VGAYQEVLG 1zupA 247 :RKVFDDLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=77403 # 1vkwA.516.187 read from T0547.t04.many.frag # found chain 1vkwA in template set T0547 516 :VGAYQEVLG 1vkwA 176 :SHAYLTARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77404 # 1pot.516.206 read from T0547.t04.many.frag # found chain 1pot in training set T0547 516 :VGAYQEVLG 1pot 230 :NGSAFVARQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=77405 # 1v4pA.516.15 read from T0547.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0547)G524 (1v4pA)G24 because S (epsilon) conformation "forbidden" or filtered. T0547 516 :VGAYQEVL 1v4pA 16 :KGAVVKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=77406 # 1tzpA.516.159 read from T0547.t04.many.frag # found chain 1tzpA in training set T0547 516 :VGAYQEVLG 1tzpA 179 :NPAIKQQLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=77407 # 1qqfA.516.138 read from T0547.t04.many.frag # found chain 1qqfA in training set T0547 516 :VGAYQEVLG 1qqfA 1148 :LIALQEARD Number of specific fragments extracted= 1 number of extra gaps= 0 total=77408 # 1eswA.516.447 read from T0547.t04.many.frag # found chain 1eswA in template set T0547 516 :VGAYQEVLG 1eswA 448 :VYPVQDVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77409 # 1jmuB.516.554 read from T0547.t04.many.frag # found chain 1jmuB in template set T0547 516 :VGAYQEVLG 1jmuB 597 :SRAMQAFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77410 # 1tl9A.517.167 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 517 :GAYQEVLGM 1tl9A 193 :KAYAKVNGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77411 # 1w79A.517.56 read from T0547.t04.many.frag # found chain 1w79A in training set T0547 517 :GAYQEVLGM 1w79A 57 :AAALEVLGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77412 # 2amdA.517.211 read from T0547.t04.many.frag # found chain 2amdA in template set T0547 517 :GAYQEVLGM 2amdA 207 :WLYAAVING Number of specific fragments extracted= 1 number of extra gaps= 0 total=77413 # 1su8A.517.567 read from T0547.t04.many.frag # found chain 1su8A in training set T0547 517 :GAYQEVLGM 1su8A 568 :GTWAVTIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77414 # 1uocA.517.200 read from T0547.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)G524 (1uocA)Q208 because N (gamma') conformation "forbidden" or filtered. T0547 517 :GAYQEVL 1uocA 201 :NLVYKII T0547 525 :M 1uocA 209 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=77416 # 1hp1A.517.356 read from T0547.t04.many.frag # found chain 1hp1A in training set T0547 517 :GAYQEVLGM 1hp1A 391 :AAQMDRTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77417 # 1v4aA.517.330 read from T0547.t04.many.frag # found chain 1v4aA in template set T0547 517 :GAYQEVLGM 1v4aA 331 :QVFQLIRGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77418 # 1zkdA.517.300 read from T0547.t04.many.frag # found chain 1zkdA in template set T0547 517 :GAYQEVLGM 1zkdA 301 :GAFLKRLGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77419 # 1bu6O.517.244 read from T0547.t04.many.frag # found chain 1bu6O in template set T0547 517 :GAYQEVLGM 1bu6O 245 :DQQAALFGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=77420 # 1mkaA.517.90 read from T0547.t04.many.frag # found chain 1mkaA in template set T0547 517 :GAYQEVLGM 1mkaA 91 :GFYLGWLGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77421 # 1tn6A.517.316 read from T0547.t04.many.frag # found chain 1tn6A in template set T0547 517 :GAYQEVLGM 1tn6A 317 :DIYEDMLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=77422 # 1ltzA.517.134 read from T0547.t04.many.frag # found chain 1ltzA in training set T0547 517 :GAYQEVLGM 1ltzA 135 :DVFHDLFGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=77423 # 1rlr.517.520 read from T0547.t04.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)V522 (1rlr)K526 because G (3-10) conformation "forbidden" or filtered. T0547 517 :GAYQE 1rlr 521 :AYYLA T0547 523 :LGM 1rlr 527 :HGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=77425 # 1l1lA.517.475 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 517 :GAYQEVLGM 1l1lA 476 :GIQDWLLTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=77426 # 1um0A.517.135 read from T0547.t04.many.frag # found chain 1um0A in template set T0547 517 :GAYQEVLGM 1um0A 136 :GAFAKMLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=77427 # 1dmhA.517.205 read from T0547.t04.many.frag # found chain 1dmhA in training set T0547 517 :GAYQEVLGM 1dmhA 206 :GPTQQLLNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=77428 # 1lam.517.361 read from T0547.t04.many.frag # found chain 1lam in training set Warning: unaligning (T0547)G524 (1lam)G369 because S (epsilon) conformation "forbidden" or filtered. T0547 517 :GAYQEVL 1lam 362 :GAMDIAL T0547 525 :M 1lam 370 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=77430 # 1t3tA.517.1143 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)G517 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3tA)N1136 T0547 518 :AYQEVLGM 1t3tA 1137 :GCQMMSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77431 # 2fbwB.517.185 read from T0547.t04.many.frag # found chain 2fbwB in template set T0547 517 :GAYQEVLGM 2fbwB 186 :QAYRWMIDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77432 # 1jmuB.517.555 read from T0547.t04.many.frag # found chain 1jmuB in template set T0547 517 :GAYQEVLGM 1jmuB 598 :RAMQAFIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=77433 # 1kwgA.517.297 read from T0547.t04.many.frag # found chain 1kwgA in training set T0547 517 :GAYQEVLGM 1kwgA 298 :DLYRGVGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77434 # 1v4pA.517.16 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 517 :GAYQEVLGM 1v4pA 17 :GAVVKVLGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77435 # 1usyA.517.132 read from T0547.t04.many.frag # found chain 1usyA in template set T0547 517 :GAYQEVLGM 1usyA 133 :GVYEDLLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77436 # 1zupA.517.259 read from T0547.t04.many.frag # found chain 1zupA in template set T0547 517 :GAYQEVLGM 1zupA 248 :KVFDDLAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77437 # 1dxrC.517.233 read from T0547.t04.many.frag # found chain 1dxrC in template set Warning: unaligning (T0547)M525 (1dxrC)T242 because Y (epsilon') conformation "forbidden" or filtered. T0547 517 :GAYQEVLG 1dxrC 234 :MSISDSLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=77438 # 1eswA.517.448 read from T0547.t04.many.frag # found chain 1eswA in template set Warning: unaligning (T0547)M525 (1eswA)L457 because P (beta_P) conformation "forbidden" or filtered. T0547 517 :GAYQEVLG 1eswA 449 :YPVQDVLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=77439 # 1hz4A.517.258 read from T0547.t04.many.frag # found chain 1hz4A in training set T0547 517 :GAYQEVLGM 1hz4A 257 :IARAQILLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77440 # 1r6fA.517.211 read from T0547.t04.many.frag # found chain 1r6fA in template set T0547 517 :GAYQEVLGM 1r6fA 234 :VSIKDFLGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77441 # 1j79A.517.275 read from T0547.t04.many.frag # found chain 1j79A in training set T0547 517 :GAYQEVLGM 1j79A 276 :GSYATVFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77442 # 1mugA.517.109 read from T0547.t04.many.frag # found chain 1mugA in training set T0547 517 :GAYQEVLGM 1mugA 110 :QAYEQGFSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=77443 # 1tl9A.518.168 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 518 :AYQEVLGMK 1tl9A 194 :AYAKVNGSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=77444 # 1w79A.518.57 read from T0547.t04.many.frag # found chain 1w79A in training set T0547 518 :AYQEVLGMK 1w79A 58 :AALEVLGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=77445 # 2amdA.518.212 read from T0547.t04.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)M525 (2amdA)G215 because T (delta_L) conformation "forbidden" or filtered. T0547 518 :AYQEVLG 2amdA 208 :LYAAVIN T0547 526 :K 2amdA 216 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=77447 # 1v4aA.518.331 read from T0547.t04.many.frag # found chain 1v4aA in template set T0547 518 :AYQEVLGMK 1v4aA 332 :VFQLIRGGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=77448 # 1su8A.518.568 read from T0547.t04.many.frag # found chain 1su8A in training set T0547 518 :AYQEVLGMK 1su8A 569 :TWAVTIGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=77449 # 1uocA.518.201 read from T0547.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)G524 (1uocA)Q208 because N (gamma') conformation "forbidden" or filtered. T0547 518 :AYQEVL 1uocA 202 :LVYKII T0547 525 :MK 1uocA 209 :EF Number of specific fragments extracted= 2 number of extra gaps= 1 total=77451 # 1bu6O.518.245 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)K526 (1bu6O)L254 because L (left) conformation "forbidden" or filtered. T0547 518 :AYQEVLGM 1bu6O 246 :QQAALFGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=77452 # 1r6fA.518.212 read from T0547.t04.many.frag # found chain 1r6fA in template set T0547 518 :AYQEVLGMK 1r6fA 235 :SIKDFLGSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77453 # 1mkaA.518.91 read from T0547.t04.many.frag # found chain 1mkaA in template set T0547 518 :AYQEVLGMK 1mkaA 92 :FYLGWLGGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77454 # 1hp1A.518.357 read from T0547.t04.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)M525 (1hp1A)A399 because P (beta_P) conformation "forbidden" or filtered. T0547 518 :AYQEVLG 1hp1A 392 :AQMDRTG T0547 526 :K 1hp1A 400 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=77456 # 1ltzA.518.135 read from T0547.t04.many.frag # found chain 1ltzA in training set T0547 518 :AYQEVLGMK 1ltzA 136 :VFHDLFGHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77457 # 1tn6A.518.317 read from T0547.t04.many.frag # found chain 1tn6A in template set Warning: unaligning (T0547)K526 (1tn6A)Q326 because L (left) conformation "forbidden" or filtered. T0547 518 :AYQEVLGM 1tn6A 318 :IYEDMLEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=77458 # 1dmhA.518.206 read from T0547.t04.many.frag # found chain 1dmhA in training set T0547 518 :AYQEVLGMK 1dmhA 207 :PTQQLLNQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77459 # 1zkdA.518.301 read from T0547.t04.many.frag # found chain 1zkdA in template set T0547 518 :AYQEVLGMK 1zkdA 302 :AFLKRLGIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77460 # 1jmuB.518.556 read from T0547.t04.many.frag # found chain 1jmuB in template set T0547 518 :AYQEVLGMK 1jmuB 599 :AMQAFIGDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=77461 # 1rlr.518.521 read from T0547.t04.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)M525 (1rlr)K529 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (1rlr)R530 because E (beta_S) conformation "forbidden" or filtered. T0547 518 :AYQEVLG 1rlr 522 :YYLAKHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=77462 # 1v4pA.518.17 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 518 :AYQEVLGMK 1v4pA 18 :AVVKVLGSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77463 # 1lam.518.362 read from T0547.t04.many.frag # found chain 1lam in training set Warning: unaligning (T0547)G524 (1lam)G369 because S (epsilon) conformation "forbidden" or filtered. T0547 518 :AYQEVL 1lam 363 :AMDIAL T0547 525 :MK 1lam 370 :SG Number of specific fragments extracted= 2 number of extra gaps= 1 total=77465 # 2cz1B.518.161 read from T0547.t04.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. T0547 518 :AYQEVLGM 2cz1B 162 :PFPDAIGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=77466 # 1um0A.518.136 read from T0547.t04.many.frag # found chain 1um0A in template set T0547 518 :AYQEVLGMK 1um0A 137 :AFAKMLLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77467 # 1t3tA.518.1144 read from T0547.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)G524 (1t3tA)N1143 because G (3-10) conformation "forbidden" or filtered. T0547 518 :AYQEVL 1t3tA 1137 :GCQMMS T0547 525 :MK 1t3tA 1144 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=77469 # 1l1lA.518.476 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 518 :AYQEVLGMK 1l1lA 477 :IQDWLLTRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77470 # 1dxrC.518.234 read from T0547.t04.many.frag # found chain 1dxrC in template set T0547 518 :AYQEVLGMK 1dxrC 235 :SISDSLGTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=77471 # 1kwgA.518.298 read from T0547.t04.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)M525 (1kwgA)G306 because T (delta_L) conformation "forbidden" or filtered. T0547 518 :AYQEVLG 1kwgA 299 :LYRGVGR T0547 526 :K 1kwgA 307 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=77473 # 2fbwB.518.186 read from T0547.t04.many.frag # found chain 2fbwB in template set Warning: unaligning (T0547)G524 (2fbwB)D193 because P (beta_P) conformation "forbidden" or filtered. T0547 518 :AYQEVL 2fbwB 187 :AYRWMI T0547 525 :MK 2fbwB 194 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=77475 # 1j79A.518.276 read from T0547.t04.many.frag # found chain 1j79A in training set T0547 518 :AYQEVLGMK 1j79A 277 :SYATVFEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=77476 # 1zupA.518.260 read from T0547.t04.many.frag # found chain 1zupA in template set T0547 518 :AYQEVLGMK 1zupA 249 :VFDDLAKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77477 # 1llfA.518.520 read from T0547.t04.many.frag # found chain 1llfA in training set Warning: unaligning (T0547)V522 because of BadResidue code BAD_PEPTIDE in next template residue (1llfA)M526 Warning: unaligning (T0547)L523 because of BadResidue code BAD_PEPTIDE at template residue (1llfA)M526 T0547 518 :AYQE 1llfA 521 :GYDA T0547 524 :GMK 1llfA 527 :TNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=77479 # 1ryoA.518.268 read from T0547.t04.many.frag # found chain 1ryoA in training set T0547 518 :AYQEVLGMK 1ryoA 269 :QAQEHFGKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=77480 # 1odmA.518.254 read from T0547.t04.many.frag # found chain 1odmA in training set Warning: unaligning (T0547)M525 (1odmA)N262 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (1odmA)N263 because T (delta_L) conformation "forbidden" or filtered. T0547 518 :AYQEVLG 1odmA 255 :SYMAHLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=77481 # 1tl9A.519.169 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 519 :YQEVLGMKH 1tl9A 195 :YAKVNGSYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77482 # 1w79A.519.58 read from T0547.t04.many.frag # found chain 1w79A in training set T0547 519 :YQEVLGMKH 1w79A 59 :ALEVLGADH Number of specific fragments extracted= 1 number of extra gaps= 0 total=77483 # 2amdA.519.213 read from T0547.t04.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)K526 (2amdA)D216 because N (gamma') conformation "forbidden" or filtered. T0547 519 :YQEVLGM 2amdA 209 :YAAVING T0547 527 :H 2amdA 217 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=77485 # 1r6fA.519.213 read from T0547.t04.many.frag # found chain 1r6fA in template set T0547 519 :YQEVLGMKH 1r6fA 236 :IKDFLGSEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=77486 # 1v4aA.519.332 read from T0547.t04.many.frag # found chain 1v4aA in template set T0547 519 :YQEVLGMKH 1v4aA 333 :FQLIRGGRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77487 # 1uocA.519.202 read from T0547.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)G524 (1uocA)Q208 because N (gamma') conformation "forbidden" or filtered. T0547 519 :YQEVL 1uocA 203 :VYKII T0547 525 :MKH 1uocA 209 :EFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=77489 # 1bu6O.519.246 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)K526 (1bu6O)L254 because L (left) conformation "forbidden" or filtered. T0547 519 :YQEVLGM 1bu6O 247 :QAALFGQ T0547 527 :H 1bu6O 255 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=77491 # 1su8A.519.569 read from T0547.t04.many.frag # found chain 1su8A in training set T0547 519 :YQEVLGMKH 1su8A 570 :WAVTIGLPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77492 # 2cz1B.519.162 read from T0547.t04.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)M525 (2cz1B)H169 because G (3-10) conformation "forbidden" or filtered. T0547 519 :YQEVLG 2cz1B 163 :FPDAIG T0547 526 :KH 2cz1B 170 :GR Number of specific fragments extracted= 2 number of extra gaps= 1 total=77494 # 1mkaA.519.92 read from T0547.t04.many.frag # found chain 1mkaA in template set Warning: unaligning (T0547)H527 (1mkaA)G101 because S (epsilon) conformation "forbidden" or filtered. T0547 519 :YQEVLGMK 1mkaA 93 :YLGWLGGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=77495 # 1hp1A.519.358 read from T0547.t04.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)H527 (1hp1A)F401 because Y (epsilon') conformation "forbidden" or filtered. T0547 519 :YQEVLGMK 1hp1A 393 :QMDRTGAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=77496 # 1dmhA.519.207 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)H527 (1dmhA)G216 because L (left) conformation "forbidden" or filtered. T0547 519 :YQEVLGMK 1dmhA 208 :TQQLLNQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=77497 # 1jmuB.519.557 read from T0547.t04.many.frag # found chain 1jmuB in template set T0547 519 :YQEVLGMKH 1jmuB 600 :MQAFIGDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77498 # 1ltzA.519.136 read from T0547.t04.many.frag # found chain 1ltzA in training set T0547 519 :YQEVLGMKH 1ltzA 137 :FHDLFGHVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=77499 # 1tn6A.519.318 read from T0547.t04.many.frag # found chain 1tn6A in template set Warning: unaligning (T0547)K526 (1tn6A)Q326 because L (left) conformation "forbidden" or filtered. T0547 519 :YQEVLGM 1tn6A 319 :YEDMLEN T0547 527 :H 1tn6A 327 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=77501 # 1lam.519.363 read from T0547.t04.many.frag # found chain 1lam in training set Warning: unaligning (T0547)H527 (1lam)A372 because Y (epsilon') conformation "forbidden" or filtered. T0547 519 :YQEVLGMK 1lam 364 :MDIALGSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=77502 1uzxA expands to /projects/compbio/data/pdb/1uzx.pdb.gz 1uzxA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: OE for alphabet: pdb_atoms Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1uzxA.519.152 read from T0547.t04.many.frag # adding 1uzxA to template set # found chain 1uzxA in template set Warning: unaligning (T0547)G524 (1uzxA)S150 because G (3-10) conformation "forbidden" or filtered. T0547 519 :YQEVL 1uzxA 145 :VQELM T0547 525 :MKH 1uzxA 151 :LLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=77504 # 1x38A.519.553 read from T0547.t04.many.frag # found chain 1x38A in training set T0547 519 :YQEVLGMKH 1x38A 554 :TDALFGDFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77505 # 1v4pA.519.18 read from T0547.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0547)G524 (1v4pA)G24 because S (epsilon) conformation "forbidden" or filtered. T0547 519 :YQEVL 1v4pA 19 :VVKVL T0547 525 :MKH 1v4pA 25 :SEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=77507 # 1u02A.519.164 read from T0547.t04.many.frag # found chain 1u02A in template set T0547 519 :YQEVLGMKH 1u02A 165 :IRSVRGERP Number of specific fragments extracted= 1 number of extra gaps= 0 total=77508 # 1um0A.519.137 read from T0547.t04.many.frag # found chain 1um0A in template set T0547 519 :YQEVLGMKH 1um0A 138 :FAKMLLREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77509 # 1dxrC.519.305 read from T0547.t04.many.frag # found chain 1dxrC in template set Warning: unaligning (T0547)L523 (1dxrC)Q310 because L (left) conformation "forbidden" or filtered. T0547 519 :YQEV 1dxrC 306 :RTCH T0547 524 :GMKH 1dxrC 311 :GVTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=77511 # 1rdqE.519.226 read from T0547.t04.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)K526 (1rdqE)G234 because T (delta_L) conformation "forbidden" or filtered. T0547 519 :YQEVLGM 1rdqE 227 :LIYEMAA T0547 527 :H 1rdqE 235 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=77513 # 1s9rA.519.318 read from T0547.t04.many.frag # found chain 1s9rA in training set Warning: unaligning (T0547)K526 (1s9rA)K326 because P (beta_P) conformation "forbidden" or filtered. T0547 519 :YQEVLGM 1s9rA 319 :LQSIINK T0547 527 :H 1s9rA 327 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=77515 # 1yleA.519.223 read from T0547.t04.many.frag # found chain 1yleA in training set T0547 519 :YQEVLGMKH 1yleA 222 :AQESMGQVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=77516 # 1llfA.519.521 read from T0547.t04.many.frag # found chain 1llfA in training set Warning: unaligning (T0547)V522 because of BadResidue code BAD_PEPTIDE in next template residue (1llfA)M526 Warning: unaligning (T0547)L523 because of BadResidue code BAD_PEPTIDE at template residue (1llfA)M526 T0547 519 :YQE 1llfA 522 :YDA T0547 524 :GMKH 1llfA 527 :TNPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=77518 # 1yt8A.519.449 read from T0547.t04.many.frag # found chain 1yt8A in template set T0547 519 :YQEVLGMKH 1yt8A 450 :VQALSGKPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77519 # 1j79A.519.277 read from T0547.t04.many.frag # found chain 1j79A in training set Warning: unaligning (T0547)H527 (1j79A)N286 because L (left) conformation "forbidden" or filtered. T0547 519 :YQEVLGMK 1j79A 278 :YATVFEEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=77520 # 1dxrC.519.235 read from T0547.t04.many.frag # found chain 1dxrC in template set T0547 519 :YQEVLGMKH 1dxrC 236 :ISDSLGTNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=77521 # 1w99A.519.223 read from T0547.t04.many.frag # found chain 1w99A in training set T0547 519 :YQEVLGMKH 1w99A 307 :LEAALTRDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77522 # 2amdA.520.214 read from T0547.t04.many.frag # found chain 2amdA in template set T0547 520 :QEVLGMKHN 2amdA 210 :AAVINGDRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=77523 # 1tl9A.520.170 read from T0547.t04.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 520 :QEVLG 1tl9A 196 :AKVNG T0547 526 :KHN 1tl9A 202 :YEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=77525 # 1w79A.520.59 read from T0547.t04.many.frag # found chain 1w79A in training set Warning: unaligning (T0547)H527 (1w79A)H67 because P (beta_P) conformation "forbidden" or filtered. T0547 520 :QEVLGMK 1w79A 60 :LEVLGAD T0547 528 :N 1w79A 68 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=77527 # 1r6fA.520.214 read from T0547.t04.many.frag # found chain 1r6fA in template set Warning: unaligning (T0547)N528 (1r6fA)K245 because Y (epsilon') conformation "forbidden" or filtered. T0547 520 :QEVLGMKH 1r6fA 237 :KDFLGSEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=77528 # 2cz1B.520.163 read from T0547.t04.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. T0547 520 :QEVLGM 2cz1B 164 :PDAIGH T0547 527 :HN 2cz1B 171 :RN Number of specific fragments extracted= 2 number of extra gaps= 1 total=77530 # 1v4aA.520.333 read from T0547.t04.many.frag # found chain 1v4aA in template set T0547 520 :QEVLGMKHN 1v4aA 334 :QLIRGGREP Number of specific fragments extracted= 1 number of extra gaps= 0 total=77531 # 1uocA.520.203 read from T0547.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)G524 (1uocA)Q208 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1uocA)Q226 T0547 520 :QEVL 1uocA 204 :YKII T0547 525 :MKH 1uocA 209 :EFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=77533 # 1bu6O.520.247 read from T0547.t04.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)K526 (1bu6O)L254 because L (left) conformation "forbidden" or filtered. T0547 520 :QEVLGM 1bu6O 248 :AALFGQ T0547 527 :HN 1bu6O 255 :CV Number of specific fragments extracted= 2 number of extra gaps= 1 total=77535 # 1dmhA.520.208 read from T0547.t04.many.frag # found chain 1dmhA in training set T0547 520 :QEVLGMKHN 1dmhA 209 :QQLLNQLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=77536 # 1su8A.520.570 read from T0547.t04.many.frag # found chain 1su8A in training set T0547 520 :QEVLGMKHN 1su8A 571 :AVTIGLPTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=77537 # 1hp1A.520.359 read from T0547.t04.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)M525 (1hp1A)A399 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1hp1A)F401 because Y (epsilon') conformation "forbidden" or filtered. T0547 520 :QEVLG 1hp1A 394 :MDRTG T0547 526 :K 1hp1A 400 :D T0547 528 :N 1hp1A 402 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=77540 # 1jmuB.520.558 read from T0547.t04.many.frag # found chain 1jmuB in template set Warning: unaligning (T0547)G524 (1jmuB)G605 because H (helix) conformation "forbidden" or filtered. T0547 520 :QEVL 1jmuB 601 :QAFI T0547 525 :MKHN 1jmuB 606 :DPST Number of specific fragments extracted= 2 number of extra gaps= 1 total=77542 # 1mkaA.520.93 read from T0547.t04.many.frag # found chain 1mkaA in template set T0547 520 :QEVLGMKHN 1mkaA 94 :LGWLGGEGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=77543 # 1rdqE.520.227 read from T0547.t04.many.frag # found chain 1rdqE in training set T0547 520 :QEVLGMKHN 1rdqE 228 :IYEMAAGYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=77544 # 1ltzA.520.137 read from T0547.t04.many.frag # found chain 1ltzA in training set T0547 520 :QEVLGMKHN 1ltzA 138 :HDLFGHVPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77545 # 1w99A.520.224 read from T0547.t04.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)N528 (1w99A)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 520 :QEVLGMKH 1w99A 308 :EAALTRDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=77546 # 1tn6A.520.319 read from T0547.t04.many.frag # found chain 1tn6A in template set Warning: unaligning (T0547)K526 (1tn6A)Q326 because L (left) conformation "forbidden" or filtered. T0547 520 :QEVLGM 1tn6A 320 :EDMLEN T0547 527 :HN 1tn6A 327 :CD Number of specific fragments extracted= 2 number of extra gaps= 1 total=77548 # 1uzxA.520.153 read from T0547.t04.many.frag # found chain 1uzxA in template set Warning: unaligning (T0547)G524 (1uzxA)S150 because G (3-10) conformation "forbidden" or filtered. T0547 520 :QEVL 1uzxA 146 :QELM T0547 525 :MKHN 1uzxA 151 :LLHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=77550 # 2bh1A.520.223 read from T0547.t04.many.frag # found chain 2bh1A in template set T0547 520 :QEVLGMKHN 2bh1A 224 :QEALTSKFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=77551 # 1lam.520.364 read from T0547.t04.many.frag # found chain 1lam in training set Warning: unaligning (T0547)H527 (1lam)A372 because Y (epsilon') conformation "forbidden" or filtered. T0547 520 :QEVLGMK 1lam 365 :DIALGSG T0547 528 :N 1lam 373 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=77553 # 1x38A.520.554 read from T0547.t04.many.frag # found chain 1x38A in training set Warning: unaligning (T0547)H527 (1x38A)G562 because P (beta_P) conformation "forbidden" or filtered. T0547 520 :QEVLGMK 1x38A 555 :DALFGDF T0547 528 :N 1x38A 563 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=77555 # 1j79A.520.278 read from T0547.t04.many.frag # found chain 1j79A in training set T0547 520 :QEVLGMKHN 1j79A 279 :ATVFEEMNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77556 # 1llfA.520.522 read from T0547.t04.many.frag # found chain 1llfA in training set Warning: unaligning (T0547)V522 because of BadResidue code BAD_PEPTIDE in next template residue (1llfA)M526 Warning: unaligning (T0547)L523 because of BadResidue code BAD_PEPTIDE at template residue (1llfA)M526 T0547 520 :QE 1llfA 523 :DA T0547 524 :GMKHN 1llfA 527 :TNPSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=77558 # 1um0A.520.138 read from T0547.t04.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)N528 (1um0A)G147 because L (left) conformation "forbidden" or filtered. T0547 520 :QEVLGMKH 1um0A 139 :AKMLLREI Number of specific fragments extracted= 1 number of extra gaps= 1 total=77559 # 2cx1A.520.102 read from T0547.t04.many.frag # found chain 2cx1A in training set Warning: unaligning (T0547)G524 (2cx1A)K106 because G (3-10) conformation "forbidden" or filtered. T0547 520 :QEVL 2cx1A 102 :IALA T0547 525 :MKHN 2cx1A 107 :GAHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77561 # 1rp0A.520.242 read from T0547.t04.many.frag # found chain 1rp0A in training set T0547 520 :QEVLGMKHN 1rp0A 243 :VAEIDGAPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=77562 # 1u02A.520.165 read from T0547.t04.many.frag # found chain 1u02A in template set Warning: unaligning (T0547)N528 (1u02A)A174 because Y (epsilon') conformation "forbidden" or filtered. T0547 520 :QEVLGMKH 1u02A 166 :RSVRGERP Number of specific fragments extracted= 1 number of extra gaps= 1 total=77563 # 1dxrC.520.236 read from T0547.t04.many.frag # found chain 1dxrC in template set T0547 520 :QEVLGMKHN 1dxrC 237 :SDSLGTNCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77564 # 1n62A.520.90 read from T0547.t04.many.frag # found chain 1n62A in training set T0547 520 :QEVLGMKHN 1n62A 91 :QEGFRMMHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77565 # 1sdeA.520.102 read from T0547.t04.many.frag # found chain 1sdeA in template set T0547 520 :QEVLGMKHN 1sdeA 103 :RQVMSHRSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77566 # 1tl9A.521.171 read from T0547.t04.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 521 :EVLG 1tl9A 197 :KVNG T0547 526 :KHNL 1tl9A 202 :YEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77568 # 2cz1B.521.164 read from T0547.t04.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (2cz1B)N172 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVLGM 2cz1B 165 :DAIGH T0547 527 :H 2cz1B 171 :R T0547 529 :L 2cz1B 173 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=77571 # 1r6fA.521.215 read from T0547.t04.many.frag # found chain 1r6fA in template set Warning: unaligning (T0547)K526 (1r6fA)E243 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVLGM 1r6fA 238 :DFLGS T0547 527 :HNL 1r6fA 244 :NKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=77573 # 1v4aA.521.334 read from T0547.t04.many.frag # found chain 1v4aA in template set Warning: unaligning (T0547)K526 (1v4aA)R340 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVLGM 1v4aA 335 :LIRGG T0547 527 :HNL 1v4aA 341 :EPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=77575 # 1w79A.521.60 read from T0547.t04.many.frag # found chain 1w79A in training set T0547 521 :EVLGMKHNL 1w79A 61 :EVLGADHSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=77576 # 1dmhA.521.209 read from T0547.t04.many.frag # found chain 1dmhA in training set T0547 521 :EVLGMKHNL 1dmhA 210 :QLLNQLGRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=77577 # 2amdA.521.215 read from T0547.t04.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)G524 (2amdA)N214 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVL 2amdA 211 :AVI T0547 525 :MKHNL 2amdA 215 :GDRWF Number of specific fragments extracted= 2 number of extra gaps= 1 total=77579 # 1uocA.521.204 read from T0547.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)G524 (1uocA)Q208 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1uocA)Q226 T0547 521 :EVL 1uocA 205 :KII T0547 525 :MKH 1uocA 209 :EFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=77581 # 1su8A.521.571 read from T0547.t04.many.frag # found chain 1su8A in training set T0547 521 :EVLGMKHNL 1su8A 572 :VTIGLPTHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77582 # 2a14A.521.177 read from T0547.t04.many.frag # found chain 2a14A in training set T0547 521 :EVLGMKHNL 2a14A 178 :AALCNLASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77583 # 1e2kA.521.271 read from T0547.t04.many.frag # found chain 1e2kA in training set T0547 521 :EVLGMKHNL 1e2kA 317 :KRLRSMHVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=77584 # 1ltzA.521.138 read from T0547.t04.many.frag # found chain 1ltzA in training set T0547 521 :EVLGMKHNL 1ltzA 139 :DLFGHVPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77585 # 1bu6O.521.248 read from T0547.t04.many.frag # found chain 1bu6O in template set T0547 521 :EVLGMKHNL 1bu6O 249 :ALFGQLCVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=77586 # 1n62A.521.91 read from T0547.t04.many.frag # found chain 1n62A in training set T0547 521 :EVLGMKHNL 1n62A 92 :EGFRMMHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77587 # 1uzxA.521.154 read from T0547.t04.many.frag # found chain 1uzxA in template set Warning: unaligning (T0547)H527 (1uzxA)H153 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1uzxA)E154 because E (beta_S) conformation "forbidden" or filtered. T0547 521 :EVLGMK 1uzxA 147 :ELMSLL T0547 529 :L 1uzxA 155 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=77589 # 1jmuB.521.559 read from T0547.t04.many.frag # found chain 1jmuB in template set T0547 521 :EVLGMKHNL 1jmuB 602 :AFIGDPSTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77590 # 1w99A.521.225 read from T0547.t04.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)G524 (1w99A)T312 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1w99A)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 521 :EVL 1w99A 309 :AAL T0547 525 :MKH 1w99A 313 :RDV T0547 529 :L 1w99A 317 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=77593 # 1ud9A.521.198 read from T0547.t04.many.frag # found chain 1ud9A in training set T0547 521 :EVLGMKHNL 1ud9A 199 :EYLNDIISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77594 # 1rdqE.521.228 read from T0547.t04.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)K526 (1rdqE)G234 because T (delta_L) conformation "forbidden" or filtered. T0547 521 :EVLGM 1rdqE 229 :YEMAA T0547 527 :HNL 1rdqE 235 :YPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=77596 # 1zupA.521.263 read from T0547.t04.many.frag # found chain 1zupA in template set T0547 521 :EVLGMKHNL 1zupA 252 :DLAKTLPHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77597 # 1um0A.521.139 read from T0547.t04.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)N528 (1um0A)G147 because L (left) conformation "forbidden" or filtered. T0547 521 :EVLGMKH 1um0A 140 :KMLLREI T0547 529 :L 1um0A 148 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=77599 # 1w6sA.521.559 read from T0547.t04.many.frag # found chain 1w6sA in training set T0547 521 :EVLGMKHNL 1w6sA 560 :GAFKKLANY Number of specific fragments extracted= 1 number of extra gaps= 0 total=77600 # 2bh1A.521.224 read from T0547.t04.many.frag # found chain 2bh1A in template set T0547 521 :EVLGMKHNL 2bh1A 225 :EALTSKFNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77601 # 1z70X.521.161 read from T0547.t04.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)M525 (1z70X)G1238 because T (delta_L) conformation "forbidden" or filtered. T0547 521 :EVLG 1z70X 1234 :SCRG T0547 526 :KHNL 1z70X 1239 :LHNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=77603 # 1aa7A.521.125 read from T0547.t04.many.frag # found chain 1aa7A in template set Warning: unaligning (T0547)L529 (1aa7A)R134 because L (left) conformation "forbidden" or filtered. T0547 521 :EVLGMKHN 1aa7A 126 :SCMGLIYN Number of specific fragments extracted= 1 number of extra gaps= 1 total=77604 # 1dxrC.521.307 read from T0547.t04.many.frag # found chain 1dxrC in template set Warning: unaligning (T0547)L523 (1dxrC)Q310 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L529 (1dxrC)L316 because L (left) conformation "forbidden" or filtered. T0547 521 :EV 1dxrC 308 :CH T0547 524 :GMKHN 1dxrC 311 :GVTKP Number of specific fragments extracted= 2 number of extra gaps= 2 total=77606 # 1ir6A.521.339 read from T0547.t04.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)K526 (1ir6A)A384 because T (delta_L) conformation "forbidden" or filtered. T0547 521 :EVLGM 1ir6A 379 :EALRS T0547 527 :HNL 1ir6A 385 :EDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77608 # 1xd3A.521.102 read from T0547.t04.many.frag # found chain 1xd3A in training set Warning: unaligning (T0547)G524 (1xd3A)N106 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVL 1xd3A 103 :AIA T0547 525 :MKHNL 1xd3A 107 :NKDKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=77610 # 1mkaA.521.94 read from T0547.t04.many.frag # found chain 1mkaA in template set Warning: unaligning (T0547)M525 (1mkaA)G99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1mkaA)G101 because S (epsilon) conformation "forbidden" or filtered. T0547 521 :EVLG 1mkaA 95 :GWLG T0547 526 :K 1mkaA 100 :E T0547 528 :NL 1mkaA 102 :KG Number of specific fragments extracted= 3 number of extra gaps= 2 total=77613 # 1sdeA.521.103 read from T0547.t04.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)G524 (1sdeA)S107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (1sdeA)H108 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1sdeA)G111 because T (delta_L) conformation "forbidden" or filtered. T0547 521 :EVL 1sdeA 104 :QVM T0547 526 :KH 1sdeA 109 :RS T0547 529 :L 1sdeA 112 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=77616 # 2cz1B.522.165 read from T0547.t04.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (2cz1B)N172 because G (3-10) conformation "forbidden" or filtered. T0547 522 :VLGM 2cz1B 166 :AIGH T0547 527 :H 2cz1B 171 :R T0547 529 :LF 2cz1B 173 :DA Number of specific fragments extracted= 3 number of extra gaps= 2 total=77619 # 1tl9A.522.172 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 522 :VLGMKHNLF 1tl9A 198 :VNGSYEALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77620 # 2a14A.522.178 read from T0547.t04.many.frag # found chain 2a14A in training set T0547 522 :VLGMKHNLF 2a14A 179 :ALCNLASLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77621 # 1v4aA.522.335 read from T0547.t04.many.frag # found chain 1v4aA in template set T0547 522 :VLGMKHNLF 1v4aA 336 :IRGGREPSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77622 # 1w99A.522.226 read from T0547.t04.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)G524 (1w99A)T312 because E (beta_S) conformation "forbidden" or filtered. T0547 522 :VL 1w99A 310 :AL T0547 525 :MKHNLF 1w99A 313 :RDVHLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=77624 # 1dmhA.522.210 read from T0547.t04.many.frag # found chain 1dmhA in training set T0547 522 :VLGMKHNLF 1dmhA 211 :LLNQLGRHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77625 # 1e2kA.522.272 read from T0547.t04.many.frag # found chain 1e2kA in training set Warning: unaligning (T0547)N528 (1e2kA)V324 because P (beta_P) conformation "forbidden" or filtered. T0547 522 :VLGMKH 1e2kA 318 :RLRSMH T0547 529 :LF 1e2kA 325 :FI Number of specific fragments extracted= 2 number of extra gaps= 1 total=77627 # 1n62A.522.92 read from T0547.t04.many.frag # found chain 1n62A in training set Warning: unaligning (T0547)L529 (1n62A)L100 because Y (epsilon') conformation "forbidden" or filtered. T0547 522 :VLGMKHN 1n62A 93 :GFRMMHG T0547 530 :F 1n62A 101 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=77629 # 1r6fA.522.216 read from T0547.t04.many.frag # found chain 1r6fA in template set T0547 522 :VLGMKHNLF 1r6fA 239 :FLGSENKRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77630 # 1zupA.522.264 read from T0547.t04.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 T0547 522 :VLGMKHNL 1zupA 253 :LAKTLPHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=77631 # 1ud9A.522.199 read from T0547.t04.many.frag # found chain 1ud9A in training set T0547 522 :VLGMKHNLF 1ud9A 200 :YLNDIISLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77632 # 1w6sA.522.560 read from T0547.t04.many.frag # found chain 1w6sA in training set T0547 522 :VLGMKHNLF 1w6sA 561 :AFKKLANYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77633 # 1aa7A.522.126 read from T0547.t04.many.frag # found chain 1aa7A in template set Warning: unaligning (T0547)L529 (1aa7A)R134 because L (left) conformation "forbidden" or filtered. T0547 522 :VLGMKHN 1aa7A 127 :CMGLIYN T0547 530 :F 1aa7A 135 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=77635 # 1ltzA.522.139 read from T0547.t04.many.frag # found chain 1ltzA in training set T0547 522 :VLGMKHNLF 1ltzA 140 :LFGHVPLLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77636 # 1qqp3.522.92 read from T0547.t04.many.frag # found chain 1qqp3 in template set Warning: unaligning (T0547)F530 (1qqp3)Y101 because Y (epsilon') conformation "forbidden" or filtered. T0547 522 :VLGMKHNL 1qqp3 93 :GLAQYYTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=77637 # 1jmuB.522.560 read from T0547.t04.many.frag # found chain 1jmuB in template set T0547 522 :VLGMKHNLF 1jmuB 603 :FIGDPSTII Number of specific fragments extracted= 1 number of extra gaps= 0 total=77638 # 1um0A.522.140 read from T0547.t04.many.frag # found chain 1um0A in template set T0547 522 :VLGMKHNLF 1um0A 141 :MLLREIGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77639 # 1su8A.522.572 read from T0547.t04.many.frag # found chain 1su8A in training set T0547 522 :VLGMKHNLF 1su8A 573 :TIGLPTHIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77640 # 1uzxA.522.155 read from T0547.t04.many.frag # found chain 1uzxA in template set Warning: unaligning (T0547)G524 (1uzxA)S150 because G (3-10) conformation "forbidden" or filtered. T0547 522 :VL 1uzxA 148 :LM T0547 525 :MKHNLF 1uzxA 151 :LLHEPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=77642 # 2amdA.522.216 read from T0547.t04.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)G524 (2amdA)N214 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (2amdA)G215 because T (delta_L) conformation "forbidden" or filtered. T0547 522 :VL 2amdA 212 :VI T0547 526 :KHNLF 2amdA 216 :DRWFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77644 # 1dxrC.522.308 read from T0547.t04.many.frag # found chain 1dxrC in template set Warning: unaligning (T0547)N528 (1dxrC)P315 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L529 (1dxrC)L316 because L (left) conformation "forbidden" or filtered. T0547 522 :VLGMKH 1dxrC 309 :HQGVTK T0547 530 :F 1dxrC 317 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=77646 # 1w79A.522.61 read from T0547.t04.many.frag # found chain 1w79A in training set T0547 522 :VLGMKHNLF 1w79A 62 :VLGADHSFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77647 # 1ajsA.522.372 read from T0547.t04.many.frag # found chain 1ajsA in training set Warning: unaligning (T0547)H527 (1ajsA)H378 because L (left) conformation "forbidden" or filtered. T0547 522 :VLGMK 1ajsA 373 :LINQK T0547 528 :NLF 1ajsA 379 :IYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77649 # 1rdqE.522.229 read from T0547.t04.many.frag # found chain 1rdqE in training set T0547 522 :VLGMKHNLF 1rdqE 230 :EMAAGYPPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=77650 # 1uocA.522.205 read from T0547.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)N528 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1uocA)Q226 T0547 522 :VLGMKH 1uocA 206 :IIQEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=77651 # 1ir6A.522.340 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 522 :VLGMKHNLF 1ir6A 380 :ALRSAEDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77652 # 1z70X.522.162 read from T0547.t04.many.frag # found chain 1z70X in training set T0547 522 :VLGMKHNLF 1z70X 1235 :CRGGLHNRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77653 # 1ouoA.522.93 read from T0547.t04.many.frag # found chain 1ouoA in template set Warning: unaligning (T0547)G524 (1ouoA)A114 because G (3-10) conformation "forbidden" or filtered. T0547 522 :VL 1ouoA 112 :ME T0547 525 :MKHNLF 1ouoA 115 :DLHNLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=77655 # 1g5aA.522.371 read from T0547.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0547)M525 (1g5aA)Y375 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1g5aA)H377 because H (helix) conformation "forbidden" or filtered. T0547 522 :VLG 1g5aA 372 :ALT T0547 526 :K 1g5aA 376 :R T0547 528 :NLF 1g5aA 378 :NLP Number of specific fragments extracted= 3 number of extra gaps= 2 total=77658 # 1ox0A.522.369 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)N528 (1ox0A)N357 because L (left) conformation "forbidden" or filtered. T0547 522 :VLGMKH 1ox0A 351 :IEAMRH T0547 529 :LF 1ox0A 358 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=77660 # 2a14A.523.179 read from T0547.t04.many.frag # found chain 2a14A in training set T0547 523 :LGMKHNLFT 2a14A 180 :LCNLASLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=77661 # 2cz1B.523.166 read from T0547.t04.many.frag # found chain 2cz1B in training set T0547 523 :LGMKHNLFT 2cz1B 167 :IGHGRNDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77662 # 1w99A.523.227 read from T0547.t04.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)M525 (1w99A)R313 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1w99A)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 523 :LG 1w99A 311 :LT T0547 526 :KH 1w99A 314 :DV T0547 529 :LFT 1w99A 317 :LFT Number of specific fragments extracted= 3 number of extra gaps= 2 total=77665 # 1ud9A.523.200 read from T0547.t04.many.frag # found chain 1ud9A in training set T0547 523 :LGMKHNLFT 1ud9A 201 :LNDIISLTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=77666 # 1tl9A.523.173 read from T0547.t04.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 523 :LG 1tl9A 199 :NG T0547 526 :KHNLFT 1tl9A 202 :YEALSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=77668 # 1zupA.523.265 read from T0547.t04.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)A262 T0547 523 :LGMKHNL 1zupA 254 :AKTLPHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=77669 # 1w6sA.523.561 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)M525 (1w6sA)K564 because G (3-10) conformation "forbidden" or filtered. T0547 523 :LG 1w6sA 562 :FK T0547 526 :KHNLFT 1w6sA 565 :LANYTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=77671 # 1e2kA.523.273 read from T0547.t04.many.frag # found chain 1e2kA in training set Warning: unaligning (T0547)N528 (1e2kA)V324 because P (beta_P) conformation "forbidden" or filtered. T0547 523 :LGMKH 1e2kA 319 :LRSMH T0547 529 :LFT 1e2kA 325 :FIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77673 # 1qqp3.523.93 read from T0547.t04.many.frag # found chain 1qqp3 in template set Warning: unaligning (T0547)F530 (1qqp3)Y101 because Y (epsilon') conformation "forbidden" or filtered. T0547 523 :LGMKHNL 1qqp3 94 :LAQYYTQ T0547 531 :T 1qqp3 102 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=77675 # 1um0A.523.141 read from T0547.t04.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)N528 (1um0A)G147 because L (left) conformation "forbidden" or filtered. T0547 523 :LGMKH 1um0A 142 :LLREI T0547 529 :LFT 1um0A 148 :IVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=77677 # 1n62A.523.93 read from T0547.t04.many.frag # found chain 1n62A in training set Warning: unaligning (T0547)H527 (1n62A)H98 because L (left) conformation "forbidden" or filtered. T0547 523 :LGMK 1n62A 94 :FRMM T0547 528 :NLFT 1n62A 99 :GLQC Number of specific fragments extracted= 2 number of extra gaps= 1 total=77679 # 1r6fA.523.217 read from T0547.t04.many.frag # found chain 1r6fA in template set Warning: unaligning (T0547)N528 (1r6fA)K245 because Y (epsilon') conformation "forbidden" or filtered. T0547 523 :LGMKH 1r6fA 240 :LGSEN T0547 529 :LFT 1r6fA 246 :RTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=77681 # 1dmhA.523.211 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)H527 (1dmhA)G216 because L (left) conformation "forbidden" or filtered. T0547 523 :LGMK 1dmhA 212 :LNQL T0547 528 :NLFT 1dmhA 217 :RHGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=77683 # 1v8yA.523.82 read from T0547.t04.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)T531 (1v8yA)G91 because Y (epsilon') conformation "forbidden" or filtered. T0547 523 :LGMKHNLF 1v8yA 83 :LAEQTGLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=77684 # 1twfC.523.162 read from T0547.t04.many.frag # found chain 1twfC in template set T0547 523 :LGMKHNLFT 1twfC 163 :IAKEHAKWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77685 # 1ltzA.523.140 read from T0547.t04.many.frag # found chain 1ltzA in training set T0547 523 :LGMKHNLFT 1ltzA 141 :FGHVPLLIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=77686 # 1aa7A.523.127 read from T0547.t04.many.frag # found chain 1aa7A in template set T0547 523 :LGMKHNLFT 1aa7A 128 :MGLIYNRMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77687 # 1v4aA.523.336 read from T0547.t04.many.frag # found chain 1v4aA in template set T0547 523 :LGMKHNLFT 1v4aA 337 :RGGREPSLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=77688 # 1jmuB.523.561 read from T0547.t04.many.frag # found chain 1jmuB in template set T0547 523 :LGMKHNLFT 1jmuB 604 :IGDPSTIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77689 # 1ox0A.523.370 read from T0547.t04.many.frag # found chain 1ox0A in training set T0547 523 :LGMKHNLFT 1ox0A 352 :EAMRHNFVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=77690 # 1dxrC.523.309 read from T0547.t04.many.frag # found chain 1dxrC in template set Warning: unaligning (T0547)L523 (1dxrC)Q310 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 (1dxrC)F317 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1dxrC)G318 because T (delta_L) conformation "forbidden" or filtered. T0547 524 :GMKHNL 1dxrC 311 :GVTKPL Number of specific fragments extracted= 1 number of extra gaps= 2 total=77691 # 2b0aA.523.150 read from T0547.t04.many.frag # found chain 2b0aA in training set Warning: unaligning (T0547)T531 (2b0aA)G159 because T (delta_L) conformation "forbidden" or filtered. T0547 523 :LGMKHNLF 2b0aA 151 :NENLKNLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=77692 # 1guqA.523.205 read from T0547.t04.many.frag # found chain 1guqA in training set T0547 523 :LGMKHNLFT 1guqA 206 :LADGSRTVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77693 # 1n12A.523.115 read from T0547.t04.many.frag # found chain 1n12A in template set T0547 523 :LGMKHNLFT 1n12A 127 :KGNMQNLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77694 # 1ouoA.523.94 read from T0547.t04.many.frag # found chain 1ouoA in template set Warning: unaligning (T0547)H527 (1ouoA)H117 because H (helix) conformation "forbidden" or filtered. T0547 523 :LGMK 1ouoA 113 :EADL T0547 528 :NLFT 1ouoA 118 :NLTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=77696 # 1p42A.523.230 read from T0547.t04.many.frag # found chain 1p42A in template set Warning: unaligning (T0547)G524 (1p42A)G245 because H (helix) conformation "forbidden" or filtered. T0547 523 :L 1p42A 244 :I T0547 525 :MKHNLFT 1p42A 246 :DLYLLGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=77698 # 1ir6A.523.341 read from T0547.t04.many.frag # found chain 1ir6A in template set T0547 523 :LGMKHNLFT 1ir6A 381 :LRSAEDLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77699 # 1vefA.523.353 read from T0547.t04.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)N528 (1vefA)R359 because L (left) conformation "forbidden" or filtered. T0547 523 :LGMKH 1vefA 354 :LEKEH T0547 529 :LFT 1vefA 360 :VLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=77701 # 1wdpA.523.331 read from T0547.t04.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)N528 (1wdpA)A337 because P (beta_P) conformation "forbidden" or filtered. T0547 523 :LGMKH 1wdpA 332 :LSRHH T0547 529 :LFT 1wdpA 338 :ILN Number of specific fragments extracted= 2 number of extra gaps= 1 total=77703 # 1llfA.523.525 read from T0547.t04.many.frag # found chain 1llfA in training set Warning: unaligning (T0547)L523 because of BadResidue code BAD_PEPTIDE at template residue (1llfA)M526 Warning: unaligning (T0547)T531 because last residue in template chain is (1llfA)V534 T0547 524 :GMKHNLF 1llfA 527 :TNPSSFF Number of specific fragments extracted= 1 number of extra gaps= 1 total=77704 # 2a14A.524.180 read from T0547.t04.many.frag # found chain 2a14A in training set T0547 524 :GMKHNLFTH 2a14A 181 :CNLASLLKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=77705 # 1w99A.524.228 read from T0547.t04.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)G524 (1w99A)T312 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (1w99A)D314 because P (beta_P) conformation "forbidden" or filtered. T0547 525 :M 1w99A 313 :R T0547 527 :HNLFTH 1w99A 315 :VHLFTW Number of specific fragments extracted= 2 number of extra gaps= 2 total=77707 # 2cz1B.524.167 read from T0547.t04.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)M525 (2cz1B)H169 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (2cz1B)R171 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (2cz1B)G175 because S (epsilon) conformation "forbidden" or filtered. T0547 524 :G 2cz1B 168 :G T0547 528 :NLF 2cz1B 172 :NDA T0547 532 :H 2cz1B 176 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=77710 # 1twfC.524.163 read from T0547.t04.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)H527 (1twfC)H167 because E (beta_S) conformation "forbidden" or filtered. T0547 524 :GMK 1twfC 164 :AKE T0547 528 :NLFTH 1twfC 168 :AKWGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=77712 # 1v8yA.524.83 read from T0547.t04.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)H527 (1v8yA)T87 because G (3-10) conformation "forbidden" or filtered. T0547 524 :GMK 1v8yA 84 :AEQ T0547 528 :NLFTH 1v8yA 88 :GLSGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=77714 # 1w6sA.524.562 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)H532 (1w6sA)M571 because P (beta_P) conformation "forbidden" or filtered. T0547 524 :GMKHNLFT 1w6sA 563 :KKLANYTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=77715 # 1zupA.524.266 read from T0547.t04.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)A262 T0547 524 :GMKHNL 1zupA 255 :KTLPHL T0547 532 :H 1zupA 263 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=77717 # 1um0A.524.142 read from T0547.t04.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)N528 (1um0A)G147 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1um0A)E151 because Y (epsilon') conformation "forbidden" or filtered. T0547 524 :GMKH 1um0A 143 :LREI T0547 529 :LFT 1um0A 148 :IVC Number of specific fragments extracted= 2 number of extra gaps= 2 total=77719 # 2b0aA.524.151 read from T0547.t04.many.frag # found chain 2b0aA in training set Warning: unaligning (T0547)T531 (2b0aA)G159 because T (delta_L) conformation "forbidden" or filtered. T0547 524 :GMKHNLF 2b0aA 152 :ENLKNLV T0547 532 :H 2b0aA 160 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=77721 # 1ud9A.524.201 read from T0547.t04.many.frag # found chain 1ud9A in training set T0547 524 :GMKHNLFTH 1ud9A 202 :NDIISLTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77722 # 1ox0A.524.371 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1ox0A)T362 T0547 524 :GMKHNLFT 1ox0A 353 :AMRHNFVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=77723 # 1tl9A.524.174 read from T0547.t04.many.frag # found chain 1tl9A in template set T0547 524 :GMKHNLFTH 1tl9A 200 :GSYEALSGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77724 # 1n62A.524.94 read from T0547.t04.many.frag # found chain 1n62A in training set T0547 524 :GMKHNLFTH 1n62A 95 :RMMHGLQCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77725 # 1lvmA.524.50 read from T0547.t04.many.frag # found chain 1lvmA in training set T0547 524 :GMKHNLFTH 1lvmA 43 :TNKHLFRRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=77726 # 1n9eA.524.238 read from T0547.t04.many.frag # found chain 1n9eA in template set Warning: unaligning (T0547)M525 (1n9eA)D240 because L (left) conformation "forbidden" or filtered. T0547 524 :G 1n9eA 239 :N T0547 526 :KHNLFTH 1n9eA 241 :AENLVPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=77728 # 1n12A.524.116 read from T0547.t04.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)G524 (1n12A)G128 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1n12A)G136 because S (epsilon) conformation "forbidden" or filtered. T0547 525 :MKHNLFT 1n12A 129 :NMQNLIA Number of specific fragments extracted= 1 number of extra gaps= 2 total=77729 # 1e2kA.524.274 read from T0547.t04.many.frag # found chain 1e2kA in training set Warning: unaligning (T0547)H527 (1e2kA)H323 because E (beta_S) conformation "forbidden" or filtered. T0547 524 :GMK 1e2kA 320 :RSM T0547 528 :NLFTH 1e2kA 324 :VFILD Number of specific fragments extracted= 2 number of extra gaps= 1 total=77731 # 1qqp3.524.94 read from T0547.t04.many.frag # found chain 1qqp3 in template set Warning: unaligning (T0547)T531 (1qqp3)S102 because Y (epsilon') conformation "forbidden" or filtered. T0547 524 :GMKHNLF 1qqp3 95 :AQYYTQY T0547 532 :H 1qqp3 103 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=77733 # 1ewnA.524.64 read from T0547.t04.many.frag # found chain 1ewnA in template set T0547 524 :GMKHNLFTH 1ewnA 144 :PRNRGMFMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=77734 # 1tzlA.524.270 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)G524 (1tzlA)E272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1tzlA)A280 because L (left) conformation "forbidden" or filtered. T0547 525 :MKHNLFT 1tzlA 273 :ERFNLFP Number of specific fragments extracted= 1 number of extra gaps= 2 total=77735 # 1dxrC.524.310 read from T0547.t04.many.frag # found chain 1dxrC in template set Warning: unaligning (T0547)L529 (1dxrC)L316 because L (left) conformation "forbidden" or filtered. T0547 524 :GMKHN 1dxrC 311 :GVTKP T0547 530 :FTH 1dxrC 317 :FGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=77737 # 2a1rA.524.294 read from T0547.t04.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)H532 (2a1rA)P303 because P (beta_P) conformation "forbidden" or filtered. T0547 524 :GMKHNLFT 2a1rA 295 :HTVHQFYC Number of specific fragments extracted= 1 number of extra gaps= 1 total=77738 # 1ir6A.524.342 read from T0547.t04.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)H532 (1ir6A)R390 because Y (epsilon') conformation "forbidden" or filtered. T0547 524 :GMKHNLFT 1ir6A 382 :RSAEDLLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=77739 # 1kuuA.524.172 read from T0547.t04.many.frag # found chain 1kuuA in template set T0547 524 :GMKHNLFTH 1kuuA 173 :GGEFAAFTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=77740 # 2awgA.524.69 read from T0547.t04.many.frag # found chain 2awgA in training set T0547 524 :GMKHNLFTH 2awgA 157 :DLSVPLMDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77741 # 1aa7A.524.128 read from T0547.t04.many.frag # found chain 1aa7A in template set T0547 524 :GMKHNLFTH 1aa7A 129 :GLIYNRMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77742 # 1dmhA.524.212 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)H527 (1dmhA)G216 because L (left) conformation "forbidden" or filtered. T0547 524 :GMK 1dmhA 213 :NQL T0547 528 :NLFTH 1dmhA 217 :RHGNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=77744 # 1jbwA.524.325 read from T0547.t04.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)H532 (1jbwA)Q334 because Y (epsilon') conformation "forbidden" or filtered. T0547 524 :GMKHNLFT 1jbwA 326 :TALKQLFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=77745 # 1p42A.524.231 read from T0547.t04.many.frag # found chain 1p42A in template set T0547 524 :GMKHNLFTH 1p42A 245 :GDLYLLGSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=77746 # 1guqA.524.206 read from T0547.t04.many.frag # found chain 1guqA in training set Warning: unaligning (T0547)K526 (1guqA)G209 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1guqA)R211 because G (3-10) conformation "forbidden" or filtered. T0547 524 :GM 1guqA 207 :AD T0547 527 :H 1guqA 210 :S T0547 529 :LFTH 1guqA 212 :TVVE Number of specific fragments extracted= 3 number of extra gaps= 2 total=77749 # 2a14A.525.181 read from T0547.t04.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 2a14A 182 :NLASLLKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=77750 # 1twfC.525.164 read from T0547.t04.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)H527 (1twfC)H167 because E (beta_S) conformation "forbidden" or filtered. T0547 525 :MK 1twfC 165 :KE T0547 528 :NLFTHP 1twfC 168 :AKWGPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=77752 # 1w99A.525.229 read from T0547.t04.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)N528 (1w99A)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 525 :MKH 1w99A 313 :RDV T0547 529 :LFTHP 1w99A 317 :LFTWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77754 # 2cz1B.525.168 read from T0547.t04.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 2cz1B 169 :HGRNDAGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=77755 # 1w6sA.525.563 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)P533 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 1w6sA 564 :KLANYTQM Number of specific fragments extracted= 1 number of extra gaps= 1 total=77756 # 1v8yA.525.84 read from T0547.t04.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)N528 (1v8yA)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 525 :MKH 1v8yA 85 :EQT T0547 529 :LFTHP 1v8yA 89 :LSGDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77758 # 2b0aA.525.152 read from T0547.t04.many.frag # found chain 2b0aA in training set Warning: unaligning (T0547)T531 (2b0aA)G159 because T (delta_L) conformation "forbidden" or filtered. T0547 525 :MKHNLF 2b0aA 153 :NLKNLV T0547 532 :HP 2b0aA 160 :KS Number of specific fragments extracted= 2 number of extra gaps= 1 total=77760 # 1zupA.525.267 read from T0547.t04.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)A262 T0547 525 :MKHNL 1zupA 256 :TLPHL T0547 532 :HP 1zupA 263 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77762 # 1ewnA.525.65 read from T0547.t04.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)F530 (1ewnA)F150 because G (3-10) conformation "forbidden" or filtered. T0547 525 :MKHNL 1ewnA 145 :RNRGM T0547 531 :THP 1ewnA 151 :MKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=77764 # 1kuuA.525.173 read from T0547.t04.many.frag # found chain 1kuuA in template set T0547 525 :MKHNLFTHP 1kuuA 174 :GEFAAFTHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=77765 # 1n12A.525.117 read from T0547.t04.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)H532 (1n12A)G136 because S (epsilon) conformation "forbidden" or filtered. T0547 525 :MKHNLFT 1n12A 129 :NMQNLIA T0547 533 :P 1n12A 137 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=77767 # 1um0A.525.143 read from T0547.t04.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)N528 (1um0A)G147 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1um0A)S152 because Y (epsilon') conformation "forbidden" or filtered. T0547 525 :MKH 1um0A 144 :REI T0547 529 :LFTH 1um0A 148 :IVCE Number of specific fragments extracted= 2 number of extra gaps= 2 total=77769 # 1lvmA.525.51 read from T0547.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0547)H532 (1lvmA)N51 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1lvmA)N52 because D (zeta) conformation "forbidden" or filtered. T0547 525 :MKHNLFT 1lvmA 44 :NKHLFRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=77770 # 1tzlA.525.271 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)N528 (1tzlA)N276 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1tzlA)A280 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1tzlA)V281 because E (beta_S) conformation "forbidden" or filtered. T0547 525 :MKH 1tzlA 273 :ERF T0547 529 :LFT 1tzlA 277 :LFP Number of specific fragments extracted= 2 number of extra gaps= 2 total=77772 # 1jbwA.525.326 read from T0547.t04.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)H532 (1jbwA)Q334 because Y (epsilon') conformation "forbidden" or filtered. T0547 525 :MKHNLFT 1jbwA 327 :ALKQLFS T0547 533 :P 1jbwA 335 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=77774 # 1iuqA.525.275 read from T0547.t04.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)H527 (1iuqA)H279 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iuqA)R296 T0547 525 :MK 1iuqA 277 :LC T0547 528 :NLFTH 1iuqA 280 :DIMPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=77776 # 1n9eA.525.239 read from T0547.t04.many.frag # found chain 1n9eA in template set Warning: unaligning (T0547)M525 (1n9eA)D240 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1n9eA)G248 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 1n9eA 241 :AENLVPT Number of specific fragments extracted= 1 number of extra gaps= 2 total=77777 # 1tl9A.525.175 read from T0547.t04.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1tl9A)G207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1tl9A)G208 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1tl9A)C209 because E (beta_S) conformation "forbidden" or filtered. T0547 526 :KHNLF 1tl9A 202 :YEALS Number of specific fragments extracted= 1 number of extra gaps= 2 total=77778 # 1ud9A.525.202 read from T0547.t04.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 1ud9A 203 :DIISLTKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=77779 # 1no7A.525.446 read from T0547.t04.many.frag # found chain 1no7A in template set T0547 525 :MKHNLFTHP 1no7A 897 :LAHNMAERT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77780 # 1pgs.525.101 read from T0547.t04.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)H532 (1pgs)G109 because S (epsilon) conformation "forbidden" or filtered. T0547 525 :MKHNLFT 1pgs 102 :DFKSLLS T0547 533 :P 1pgs 110 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=77782 # 1ox0A.525.372 read from T0547.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1ox0A)T362 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1ox0A)T362 T0547 525 :MKHNLFT 1ox0A 354 :MRHNFVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=77783 # 1o75A.525.219 read from T0547.t04.many.frag # found chain 1o75A in template set T0547 525 :MKHNLFTHP 1o75A 220 :GYHSRFGSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=77784 # 2a1rA.525.295 read from T0547.t04.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)H527 (2a1rA)H298 because H (helix) conformation "forbidden" or filtered. T0547 525 :MK 2a1rA 296 :TV T0547 528 :NLFTHP 2a1rA 299 :QFYCPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77786 # 2awgA.525.70 read from T0547.t04.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)P533 (2awgA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 2awgA 158 :LSVPLMDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=77787 # 1qqp3.525.95 read from T0547.t04.many.frag # found chain 1qqp3 in template set Warning: unaligning (T0547)H532 (1qqp3)G103 because S (epsilon) conformation "forbidden" or filtered. T0547 525 :MKHNLFT 1qqp3 96 :QYYTQYS T0547 533 :P 1qqp3 104 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=77789 # 1d5tA.525.340 read from T0547.t04.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)N528 (1d5tA)N342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1d5tA)G347 because T (delta_L) conformation "forbidden" or filtered. T0547 525 :MKH 1d5tA 339 :YAH T0547 529 :LFTH 1d5tA 343 :VAAQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=77791 # 1dk0A.525.80 read from T0547.t04.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)M525 (1dk0A)P81 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1dk0A)H83 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1dk0A)G87 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1dk0A)L89 because E (beta_S) conformation "forbidden" or filtered. T0547 526 :K 1dk0A 82 :A T0547 528 :NLF 1dk0A 84 :TLY T0547 532 :H 1dk0A 88 :Q Number of specific fragments extracted= 3 number of extra gaps= 4 total=77794 # 1dxrC.525.311 read from T0547.t04.many.frag # found chain 1dxrC in template set Warning: unaligning (T0547)L529 (1dxrC)L316 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1dxrC)G318 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1dxrC)S320 because E (beta_S) conformation "forbidden" or filtered. T0547 525 :MKHN 1dxrC 312 :VTKP T0547 530 :F 1dxrC 317 :F T0547 532 :H 1dxrC 319 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=77797 # 1aa7A.525.129 read from T0547.t04.many.frag # found chain 1aa7A in template set Warning: unaligning (T0547)N528 (1aa7A)N133 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1aa7A)V138 because Y (epsilon') conformation "forbidden" or filtered. T0547 525 :MKH 1aa7A 130 :LIY T0547 529 :LFTH 1aa7A 134 :RMGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=77799 # 2a14A.526.182 read from T0547.t04.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 2a14A 183 :LASLLKP T0547 534 :T 2a14A 191 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=77801 # 1twfC.526.165 read from T0547.t04.many.frag # found chain 1twfC in template set T0547 526 :KHNLFTHPT 1twfC 166 :EHAKWGPAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77802 # 1w99A.526.230 read from T0547.t04.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)N528 (1w99A)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 526 :KH 1w99A 314 :DV T0547 529 :LFTHPT 1w99A 317 :LFTWLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=77804 # 2cz1B.526.169 read from T0547.t04.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (2cz1B)G175 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLF 2cz1B 171 :RNDA T0547 532 :H 2cz1B 176 :E T0547 534 :T 2cz1B 178 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=77807 # 1ewnA.526.66 read from T0547.t04.many.frag # found chain 1ewnA in template set T0547 526 :KHNLFTHPT 1ewnA 146 :NRGMFMKPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77808 # 1w6sA.526.564 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)N528 (1w6sA)N567 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1w6sA)M571 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. T0547 526 :KH 1w6sA 565 :LA T0547 529 :LFT 1w6sA 568 :YTQ T0547 534 :T 1w6sA 573 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=77811 # 1kuuA.526.174 read from T0547.t04.many.frag # found chain 1kuuA in template set T0547 526 :KHNLFTHPT 1kuuA 175 :EFAAFTHPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77812 # 2b0aA.526.153 read from T0547.t04.many.frag # found chain 2b0aA in training set Warning: unaligning (T0547)T531 (2b0aA)G159 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLF 2b0aA 154 :LKNLV T0547 532 :HPT 2b0aA 160 :KSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=77814 # 1lvmA.526.52 read from T0547.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0547)P533 (1lvmA)N52 because D (zeta) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 1lvmA 45 :KHLFRRN T0547 534 :T 1lvmA 53 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=77816 # 1zupA.526.268 read from T0547.t04.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)A262 Warning: unaligning (T0547)T534 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)N272 T0547 526 :KHNL 1zupA 257 :LPHL T0547 532 :HP 1zupA 263 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77818 # 1jbwA.526.327 read from T0547.t04.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)H532 (1jbwA)Q334 because Y (epsilon') conformation "forbidden" or filtered. T0547 526 :KHNLFT 1jbwA 328 :LKQLFS T0547 533 :PT 1jbwA 335 :PI Number of specific fragments extracted= 2 number of extra gaps= 1 total=77820 # 1v8yA.526.85 read from T0547.t04.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)N528 (1v8yA)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KH 1v8yA 86 :QT T0547 529 :LFTHPT 1v8yA 89 :LSGDLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=77822 # 1pgs.526.102 read from T0547.t04.many.frag # found chain 1pgs in training set T0547 526 :KHNLFTHPT 1pgs 103 :FKSLLSGNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77823 # 1tzlA.526.272 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)F530 (1tzlA)F278 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1tzlA)A280 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1tzlA)V281 because E (beta_S) conformation "forbidden" or filtered. T0547 526 :KHNL 1tzlA 274 :RFNL T0547 531 :T 1tzlA 279 :P T0547 534 :T 1tzlA 282 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=77826 # 1n12A.526.118 read from T0547.t04.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)H532 (1n12A)G136 because S (epsilon) conformation "forbidden" or filtered. T0547 526 :KHNLFT 1n12A 130 :MQNLIA T0547 533 :PT 1n12A 137 :PF Number of specific fragments extracted= 2 number of extra gaps= 1 total=77828 # 1no7A.526.447 read from T0547.t04.many.frag # found chain 1no7A in template set T0547 526 :KHNLFTHPT 1no7A 898 :AHNMAERTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77829 # 1eerB.526.117 read from T0547.t04.many.frag # found chain 1eerB in template set Warning: unaligning (T0547)K526 (1eerB)E117 because G (3-10) conformation "forbidden" or filtered. T0547 527 :HNLFTHPT 1eerB 118 :VVLLDAPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=77830 # 1o75A.526.220 read from T0547.t04.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)K526 (1o75A)Y221 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1o75A)G226 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :HNLF 1o75A 222 :HSRF T0547 532 :HPT 1o75A 227 :SDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=77832 # 1iuqA.526.276 read from T0547.t04.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)P533 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iuqA)R296 T0547 526 :KHNLFTH 1iuqA 278 :CHDIMPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=77833 # 1um0A.526.144 read from T0547.t04.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)H532 (1um0A)E151 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1um0A)S152 because Y (epsilon') conformation "forbidden" or filtered. T0547 526 :KHNLFT 1um0A 145 :EIGIVC T0547 534 :T 1um0A 153 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=77835 # 1n9eA.526.240 read from T0547.t04.many.frag # found chain 1n9eA in template set Warning: unaligning (T0547)P533 (1n9eA)G248 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 1n9eA 241 :AENLVPT T0547 534 :T 1n9eA 249 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=77837 # 2a1rA.526.296 read from T0547.t04.many.frag # found chain 2a1rA in template set Warning: unaligning (T0547)H527 (2a1rA)H298 because H (helix) conformation "forbidden" or filtered. T0547 526 :K 2a1rA 297 :V T0547 528 :NLFTHPT 2a1rA 299 :QFYCPLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=77839 # 1qqp3.526.96 read from T0547.t04.many.frag # found chain 1qqp3 in template set T0547 526 :KHNLFTHPT 1qqp3 97 :YYTQYSGTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77840 # 2nlrA.526.19 read from T0547.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)N528 (2nlrA)N22 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2nlrA)T27 because G (3-10) conformation "forbidden" or filtered. T0547 526 :KH 2nlrA 20 :QN T0547 529 :LFTH 2nlrA 23 :RWGS T0547 534 :T 2nlrA 28 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=77843 # 2a74A.526.130 read from T0547.t04.many.frag # found chain 2a74A in template set Warning: unaligning (T0547)L529 (2a74A)L134 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHN 2a74A 131 :NHK T0547 530 :FTHPT 2a74A 135 :LPVGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=77845 # 1p30A.526.568 read from T0547.t04.many.frag # found chain 1p30A in template set T0547 526 :KHNLFTHPT 1p30A 568 :IKNLLLLPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77846 # 1p1mA.526.360 read from T0547.t04.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)H527 (1p1mA)H362 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1p1mA)A363 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1p1mA)G366 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :K 1p1mA 361 :V T0547 529 :LF 1p1mA 364 :FS T0547 532 :HPT 1p1mA 367 :EVF Number of specific fragments extracted= 3 number of extra gaps= 2 total=77849 # 1d5tA.526.341 read from T0547.t04.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)H527 (1d5tA)H341 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1d5tA)N342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1d5tA)G347 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :K 1d5tA 340 :A T0547 529 :LFTH 1d5tA 343 :VAAQ T0547 534 :T 1d5tA 348 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=77852 # 2biwA.526.65 read from T0547.t04.many.frag # found chain 2biwA in template set T0547 526 :KHNLFTHPT 2biwA 66 :KHPFDGDGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=77853 # 1ud9A.526.203 read from T0547.t04.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 526 :KHNLFTH 1ud9A 204 :IISLTKL T0547 534 :T 1ud9A 212 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=77855 # 1twfC.527.166 read from T0547.t04.many.frag # found chain 1twfC in template set T0547 527 :HNLFTHPTE 1twfC 167 :HAKWGPAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77856 # 2a14A.527.183 read from T0547.t04.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :HNLFTH 2a14A 184 :ASLLKP T0547 534 :TE 2a14A 191 :GH Number of specific fragments extracted= 2 number of extra gaps= 1 total=77858 # 1w99A.527.231 read from T0547.t04.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)N528 (1w99A)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :H 1w99A 315 :V T0547 529 :LFTHPTE 1w99A 317 :LFTWLKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=77860 # 2cz1B.527.170 read from T0547.t04.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)T531 (2cz1B)G175 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLF 2cz1B 171 :RNDA T0547 532 :H 2cz1B 176 :E T0547 534 :TE 2cz1B 178 :PT Number of specific fragments extracted= 3 number of extra gaps= 2 total=77863 # 1ewnA.527.67 read from T0547.t04.many.frag # found chain 1ewnA in template set T0547 527 :HNLFTHPTE 1ewnA 147 :RGMFMKPGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77864 # 1kuuA.527.175 read from T0547.t04.many.frag # found chain 1kuuA in template set T0547 527 :HNLFTHPTE 1kuuA 176 :FAAFTHPVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77865 # 1pgs.527.103 read from T0547.t04.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)H532 (1pgs)G109 because S (epsilon) conformation "forbidden" or filtered. T0547 527 :HNLFT 1pgs 104 :KSLLS T0547 533 :PTE 1pgs 110 :NTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=77867 # 1o75A.527.221 read from T0547.t04.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)T531 (1o75A)G226 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :HNLF 1o75A 222 :HSRF T0547 532 :HPTE 1o75A 227 :SDAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=77869 # 1lvmA.527.53 read from T0547.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0547)P533 (1lvmA)N52 because D (zeta) conformation "forbidden" or filtered. T0547 527 :HNLFTH 1lvmA 46 :HLFRRN T0547 534 :TE 1lvmA 53 :GT Number of specific fragments extracted= 2 number of extra gaps= 1 total=77871 # 1w6sA.527.565 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)P533 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1w6sA)G574 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :HNLFTH 1w6sA 566 :ANYTQM T0547 534 :T 1w6sA 573 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=77873 # 2b0aA.527.154 read from T0547.t04.many.frag # found chain 2b0aA in training set Warning: unaligning (T0547)T531 (2b0aA)G159 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :HNLF 2b0aA 155 :KNLV T0547 532 :HPTE 2b0aA 160 :KSFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=77875 # 1eerB.527.118 read from T0547.t04.many.frag # found chain 1eerB in template set T0547 527 :HNLFTHPTE 1eerB 118 :VVLLDAPVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=77876 # 2nlrA.527.20 read from T0547.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)N528 (2nlrA)N22 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2nlrA)T27 because G (3-10) conformation "forbidden" or filtered. T0547 527 :H 2nlrA 21 :N T0547 529 :LFTH 2nlrA 23 :RWGS T0547 534 :TE 2nlrA 28 :AP Number of specific fragments extracted= 3 number of extra gaps= 2 total=77879 # 1xszA.527.286 read from T0547.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)F530 (1xszA)F288 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1xszA)Q291 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNL 1xszA 285 :KWL T0547 531 :TH 1xszA 289 :GE T0547 534 :TE 1xszA 292 :PR Number of specific fragments extracted= 3 number of extra gaps= 2 total=77882 # 1tzlA.527.273 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)P533 (1tzlA)V281 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLFTH 1tzlA 275 :FNLFPA T0547 534 :TE 1tzlA 282 :AC Number of specific fragments extracted= 2 number of extra gaps= 1 total=77884 # 2a74A.527.131 read from T0547.t04.many.frag # found chain 2a74A in template set T0547 527 :HNLFTHPTE 2a74A 132 :HKLLPVGRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77885 # 1qqp3.527.97 read from T0547.t04.many.frag # found chain 1qqp3 in template set Warning: unaligning (T0547)T531 (1qqp3)S102 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :HNLF 1qqp3 98 :YTQY T0547 532 :HPTE 1qqp3 103 :GTIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=77887 # 1sh8A.527.75 read from T0547.t04.many.frag # found chain 1sh8A in training set T0547 527 :HNLFTHPTE 1sh8A 74 :ARFYPIVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77888 # 1no7A.527.448 read from T0547.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)H527 (1no7A)H899 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1no7A)N900 because D (zeta) conformation "forbidden" or filtered. T0547 529 :LFTHPTE 1no7A 901 :MAERTTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=77889 # 1v8yA.527.86 read from T0547.t04.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)N528 (1v8yA)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :H 1v8yA 87 :T T0547 529 :LFTHPTE 1v8yA 89 :LSGDLTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=77891 # 2awgA.527.72 read from T0547.t04.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)P533 (2awgA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :HNLFTH 2awgA 160 :VPLMDV T0547 534 :TE 2awgA 167 :ET Number of specific fragments extracted= 2 number of extra gaps= 1 total=77893 # 1mbmA.527.173 read from T0547.t04.many.frag # found chain 1mbmA in template set Warning: unaligning (T0547)N528 (1mbmA)N181 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1mbmA)D185 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1mbmA)V186 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1mbmA)A188 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :H 1mbmA 180 :D T0547 529 :LFT 1mbmA 182 :IIA T0547 534 :T 1mbmA 187 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=77896 # 1p30A.527.569 read from T0547.t04.many.frag # found chain 1p30A in template set T0547 527 :HNLFTHPTE 1p30A 569 :KNLLLLPGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77897 # 1n9eA.527.241 read from T0547.t04.many.frag # found chain 1n9eA in template set Warning: unaligning (T0547)P533 (1n9eA)G248 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :HNLFTH 1n9eA 242 :ENLVPT T0547 534 :TE 1n9eA 249 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=77899 # 2biwA.527.66 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)H527 (2biwA)H67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (2biwA)D72 because P (beta_P) conformation "forbidden" or filtered. T0547 528 :NLFT 2biwA 68 :PFDG T0547 533 :PTE 2biwA 73 :GMV Number of specific fragments extracted= 2 number of extra gaps= 2 total=77901 # 1jbwA.527.328 read from T0547.t04.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)H532 (1jbwA)Q334 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :HNLFT 1jbwA 329 :KQLFS T0547 533 :PTE 1jbwA 335 :PIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=77903 # 1p1mA.527.361 read from T0547.t04.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)T531 (1p1mA)G366 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1p1mA)A370 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :HNLF 1p1mA 362 :HAFS T0547 532 :HPT 1p1mA 367 :EVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=77905 # 1iuqA.527.277 read from T0547.t04.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)H527 (1iuqA)H279 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iuqA)R296 T0547 528 :NLFTH 1iuqA 280 :DIMPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=77906 # 1l3kA.527.33 read from T0547.t04.many.frag # found chain 1l3kA in training set Warning: unaligning (T0547)P533 (1l3kA)L40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1l3kA)D42 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :HNLFTH 1l3kA 34 :FEQWGT T0547 534 :T 1l3kA 41 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=77908 # 1oygA.527.308 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)P533 (1oygA)I341 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1oygA)R343 because L (left) conformation "forbidden" or filtered. T0547 527 :HNLFTH 1oygA 335 :NTVTDE T0547 534 :T 1oygA 342 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=77910 # 1twfC.528.167 read from T0547.t04.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)E535 (1twfC)A175 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1twfC)I176 because D (zeta) conformation "forbidden" or filtered. T0547 528 :NLFTHPT 1twfC 168 :AKWGPAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=77911 # 2cz1B.528.171 read from T0547.t04.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2cz1B)T179 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLFTH 2cz1B 172 :NDAGE T0547 534 :T 2cz1B 178 :P T0547 536 :A 2cz1B 180 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=77914 # 1w99A.528.232 read from T0547.t04.many.frag # found chain 1w99A in training set Warning: unaligning (T0547)N528 (1w99A)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTHPTEA 1w99A 317 :LFTWLKRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=77915 # 1ewnA.528.68 read from T0547.t04.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)T534 (1ewnA)G154 because T (delta_L) conformation "forbidden" or filtered. T0547 528 :NLFTHP 1ewnA 148 :GMFMKP T0547 535 :EA 1ewnA 155 :TL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77917 # 2a14A.528.184 read from T0547.t04.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. T0547 528 :NLFTH 2a14A 185 :SLLKP T0547 534 :TEA 2a14A 191 :GHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77919 # 1kuuA.528.176 read from T0547.t04.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)H532 (1kuuA)H181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1kuuA)T184 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLFT 1kuuA 177 :AAFT T0547 533 :PT 1kuuA 182 :PV T0547 536 :A 1kuuA 185 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=77922 # 1o75A.528.222 read from T0547.t04.many.frag # found chain 1o75A in template set T0547 528 :NLFTHPTEA 1o75A 223 :SRFGSDAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77923 # 1pgs.528.104 read from T0547.t04.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)H532 (1pgs)G109 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1pgs)E112 because P (beta_P) conformation "forbidden" or filtered. T0547 528 :NLFT 1pgs 105 :SLLS T0547 533 :PT 1pgs 110 :NT T0547 536 :A 1pgs 113 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=77926 # 1sh8A.528.76 read from T0547.t04.many.frag # found chain 1sh8A in training set T0547 528 :NLFTHPTEA 1sh8A 75 :RFYPIVKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=77927 # 1w6sA.528.566 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)P533 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLFTH 1w6sA 567 :NYTQM T0547 534 :TEA 1w6sA 573 :GGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=77929 # 1t0tV.528.132 read from T0547.t04.many.frag # found chain 1t0tV in training set T0547 528 :NLFTHPTEA 1t0tV 133 :PILPKTNYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=77930 # 1ydxA.528.292 read from T0547.t04.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1ydxA)T275 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1ydxA)T275 T0547 528 :NLFT 1ydxA 270 :PWFN T0547 534 :TEA 1ydxA 276 :GSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=77932 # 1hxxA.528.127 read from T0547.t04.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)T531 (1hxxA)G131 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLF 1hxxA 128 :FFV T0547 532 :H 1hxxA 132 :R T0547 534 :TEA 1hxxA 134 :GGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=77935 # 2b0aA.528.155 read from T0547.t04.many.frag # found chain 2b0aA in training set T0547 528 :NLFTHPTEA 2b0aA 156 :NLVGKSFYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=77936 # 1xszA.528.287 read from T0547.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)T531 (1xszA)G289 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1xszA)Q291 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLF 1xszA 286 :WLF T0547 532 :H 1xszA 290 :E T0547 534 :TEA 1xszA 292 :PRV Number of specific fragments extracted= 3 number of extra gaps= 2 total=77939 # 1lvmA.528.54 read from T0547.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0547)P533 (1lvmA)N52 because D (zeta) conformation "forbidden" or filtered. T0547 528 :NLFTH 1lvmA 47 :LFRRN T0547 534 :TEA 1lvmA 53 :GTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=77941 # 2nlrA.528.21 read from T0547.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)N528 (2nlrA)N22 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2nlrA)T27 because G (3-10) conformation "forbidden" or filtered. T0547 529 :LFTH 2nlrA 23 :RWGS T0547 534 :TEA 2nlrA 28 :APQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=77943 # 2awgA.528.73 read from T0547.t04.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)P533 (2awgA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 528 :NLFTH 2awgA 161 :PLMDV T0547 534 :TEA 2awgA 167 :ETA Number of specific fragments extracted= 2 number of extra gaps= 1 total=77945 # 1p30A.528.570 read from T0547.t04.many.frag # found chain 1p30A in template set Warning: unaligning (T0547)N528 (1p30A)N570 because G (3-10) conformation "forbidden" or filtered. T0547 529 :LFTHPTEA 1p30A 571 :LLLLPGSY Number of specific fragments extracted= 1 number of extra gaps= 1 total=77946 # 1ud9A.528.205 read from T0547.t04.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLFTH 1ud9A 206 :SLTKL T0547 534 :TEA 1ud9A 212 :DYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=77948 # 2biwA.528.67 read from T0547.t04.many.frag # found chain 2biwA in template set T0547 528 :NLFTHPTEA 2biwA 68 :PFDGDGMVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=77949 # 1oygA.528.309 read from T0547.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)N528 (1oygA)T336 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1oygA)I341 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1oygA)R343 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1oygA)A344 because P (beta_P) conformation "forbidden" or filtered. T0547 529 :LFTH 1oygA 337 :VTDE T0547 534 :T 1oygA 342 :E Number of specific fragments extracted= 2 number of extra gaps= 3 total=77951 # 1qqp3.528.98 read from T0547.t04.many.frag # found chain 1qqp3 in template set T0547 528 :NLFTHPTEA 1qqp3 99 :TQYSGTINL Number of specific fragments extracted= 1 number of extra gaps= 0 total=77952 # 2a74A.528.132 read from T0547.t04.many.frag # found chain 2a74A in template set Warning: unaligning (T0547)N528 (2a74A)K133 because G (3-10) conformation "forbidden" or filtered. T0547 529 :LFTHPTEA 2a74A 134 :LLPVGRTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=77953 # 1jihA.528.434 read from T0547.t04.many.frag # found chain 1jihA in template set T0547 528 :NLFTHPTEA 1jihA 435 :NKIVIPRTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=77954 # 1eerB.528.119 read from T0547.t04.many.frag # found chain 1eerB in template set Warning: unaligning (T0547)H532 (1eerB)A123 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (1eerB)V125 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1eerB)G126 because L (left) conformation "forbidden" or filtered. T0547 528 :NLFT 1eerB 119 :VLLD T0547 533 :P 1eerB 124 :P T0547 536 :A 1eerB 127 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=77957 # 1lb6A.528.75 read from T0547.t04.many.frag # found chain 1lb6A in training set Warning: unaligning (T0547)T531 (1lb6A)P425 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1lb6A)Q427 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLF 1lb6A 422 :LPW T0547 532 :H 1lb6A 426 :F T0547 534 :TEA 1lb6A 428 :GTI Number of specific fragments extracted= 3 number of extra gaps= 2 total=77960 # 1p1mA.528.362 read from T0547.t04.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)N528 (1p1mA)A363 because G (3-10) conformation "forbidden" or filtered. T0547 529 :LFTHPTEA 1p1mA 364 :FSGEVFAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=77961 # 1gpiA.528.286 read from T0547.t04.many.frag # found chain 1gpiA in training set Warning: unaligning (T0547)N528 (1gpiA)T287 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1gpiA)E294 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTHPT 1gpiA 288 :STGTLS T0547 536 :A 1gpiA 295 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=77963 # 1tzlA.528.274 read from T0547.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)P533 (1tzlA)V281 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLFTH 1tzlA 276 :NLFPA T0547 534 :TEA 1tzlA 282 :ACE Number of specific fragments extracted= 2 number of extra gaps= 1 total=77965 # 1twfC.529.168 read from T0547.t04.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)A536 (1twfC)I176 because D (zeta) conformation "forbidden" or filtered. T0547 529 :LFTHPTE 1twfC 169 :KWGPAAA T0547 537 :I 1twfC 177 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=77967 # 2cz1B.529.172 read from T0547.t04.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)T531 (2cz1B)G175 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LF 2cz1B 173 :DA T0547 532 :H 2cz1B 176 :E T0547 534 :TEAI 2cz1B 178 :PTYH Number of specific fragments extracted= 3 number of extra gaps= 2 total=77970 # 1o75A.529.223 read from T0547.t04.many.frag # found chain 1o75A in template set T0547 529 :LFTHPTEAI 1o75A 224 :RFGSDAEAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77971 # 1w99A.529.233 read from T0547.t04.many.frag # found chain 1w99A in training set T0547 529 :LFTHPTEAI 1w99A 317 :LFTWLKRVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=77972 # 1kuuA.529.177 read from T0547.t04.many.frag # found chain 1kuuA in template set T0547 529 :LFTHPTEAI 1kuuA 178 :AFTHPVTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77973 # 1ewnA.529.69 read from T0547.t04.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)F530 (1ewnA)F150 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1ewnA)K152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (1ewnA)G154 because T (delta_L) conformation "forbidden" or filtered. T0547 529 :L 1ewnA 149 :M T0547 531 :T 1ewnA 151 :M T0547 533 :P 1ewnA 153 :P T0547 535 :EAI 1ewnA 155 :TLY Number of specific fragments extracted= 4 number of extra gaps= 3 total=77977 # 1pgs.529.105 read from T0547.t04.many.frag # found chain 1pgs in training set T0547 529 :LFTHPTEAI 1pgs 106 :LLSGNTELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=77978 # 1sh8A.529.77 read from T0547.t04.many.frag # found chain 1sh8A in training set Warning: unaligning (T0547)E535 (1sh8A)E82 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTHPT 1sh8A 76 :FYPIVK T0547 536 :AI 1sh8A 83 :MT Number of specific fragments extracted= 2 number of extra gaps= 1 total=77980 # 1lb6A.529.76 read from T0547.t04.many.frag # found chain 1lb6A in training set Warning: unaligning (T0547)T531 (1lb6A)P425 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1lb6A)Q427 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (1lb6A)G428 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LF 1lb6A 423 :PW T0547 532 :H 1lb6A 426 :F T0547 535 :EAI 1lb6A 429 :TIR Number of specific fragments extracted= 3 number of extra gaps= 2 total=77983 # 2a14A.529.185 read from T0547.t04.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. T0547 529 :LFTH 2a14A 186 :LLKP T0547 534 :TEAI 2a14A 191 :GHLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=77985 # 1hxxA.529.128 read from T0547.t04.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)H532 (1hxxA)R132 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1hxxA)G135 because L (left) conformation "forbidden" or filtered. T0547 529 :LFT 1hxxA 129 :FVG T0547 534 :T 1hxxA 134 :G T0547 536 :AI 1hxxA 136 :VA Number of specific fragments extracted= 3 number of extra gaps= 2 total=77988 # 1t0tV.529.133 read from T0547.t04.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)E535 (1t0tV)Y140 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTHPT 1t0tV 134 :ILPKTN T0547 536 :AI 1t0tV 141 :IC Number of specific fragments extracted= 2 number of extra gaps= 1 total=77990 # 2bbdA.529.225 read from T0547.t04.many.frag # found chain 2bbdA in template set T0547 529 :LFTHPTEAI 2bbdA 227 :NNTDPTEYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=77991 # 1jihA.529.435 read from T0547.t04.many.frag # found chain 1jihA in template set T0547 529 :LFTHPTEAI 1jihA 436 :KIVIPRTVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=77992 # 2biwA.529.68 read from T0547.t04.many.frag # found chain 2biwA in template set T0547 529 :LFTHPTEAI 2biwA 69 :FDGDGMVTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=77993 # 1ydxA.529.293 read from T0547.t04.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)L529 (1ydxA)W271 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1ydxA)T275 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1ydxA)T275 T0547 530 :FT 1ydxA 272 :FN T0547 534 :TEAI 1ydxA 276 :GSIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=77995 # 1dmhA.529.217 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E535 (1dmhA)H224 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1dmhA)I225 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTHPT 1dmhA 218 :HGNRPA T0547 537 :I 1dmhA 226 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=77997 # 1ud9A.529.206 read from T0547.t04.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTH 1ud9A 207 :LTKL T0547 534 :TEAI 1ud9A 212 :DYVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=77999 # 2awgA.529.74 read from T0547.t04.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)P533 (2awgA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 529 :LFTH 2awgA 162 :LMDV T0547 534 :TEAI 2awgA 167 :ETAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=78001 # 1tzpA.529.183 read from T0547.t04.many.frag # found chain 1tzpA in training set Warning: unaligning (T0547)L529 (1tzpA)W203 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1tzpA)Q205 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1tzpA)H206 because L (left) conformation "forbidden" or filtered. T0547 530 :F 1tzpA 204 :F T0547 533 :PTEAI 1tzpA 207 :RAHMH Number of specific fragments extracted= 2 number of extra gaps= 2 total=78003 # 1vcaA.529.61 read from T0547.t04.many.frag # found chain 1vcaA in training set Warning: unaligning (T0547)L529 (1vcaA)S62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (1vcaA)H67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1vcaA)S68 because P (beta_P) conformation "forbidden" or filtered. T0547 530 :FTHP 1vcaA 63 :FGNE T0547 536 :AI 1vcaA 69 :YL Number of specific fragments extracted= 2 number of extra gaps= 2 total=78005 # 1w6sA.529.567 read from T0547.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)P533 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1w6sA)G574 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTH 1w6sA 568 :YTQM T0547 534 :T 1w6sA 573 :G T0547 536 :AI 1w6sA 575 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=78008 # 2nlrA.529.22 read from T0547.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)P533 (2nlrA)T27 because G (3-10) conformation "forbidden" or filtered. T0547 529 :LFTH 2nlrA 23 :RWGS T0547 534 :TEAI 2nlrA 28 :APQC Number of specific fragments extracted= 2 number of extra gaps= 1 total=78010 # 1ten.529.24 read from T0547.t04.many.frag # found chain 1ten in training set Warning: unaligning (T0547)P533 (1ten)I830 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1ten)G832 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTH 1ten 826 :PLAE T0547 534 :T 1ten 831 :D T0547 536 :AI 1ten 833 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=78013 # 1gpiA.529.287 read from T0547.t04.many.frag # found chain 1gpiA in training set T0547 529 :LFTHPTEAI 1gpiA 288 :STGTLSEIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=78014 1wcdJ expands to /projects/compbio/data/pdb/1wcd.pdb.gz 1wcdJ:# 1wcdJ.529.62 read from T0547.t04.many.frag # adding 1wcdJ to template set # found chain 1wcdJ in template set Warning: unaligning (T0547)E535 (1wcdJ)G69 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTHPT 1wcdJ 63 :FPGSIV T0547 536 :AI 1wcdJ 70 :AH Number of specific fragments extracted= 2 number of extra gaps= 1 total=78016 # 2ayh.529.139 read from T0547.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)H532 (2ayh)G143 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFT 2ayh 140 :ASK T0547 533 :PTEAI 2ayh 144 :FHTYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=78018 # 2bemA.529.84 read from T0547.t04.many.frag # found chain 2bemA in training set Warning: unaligning (T0547)P533 (2bemA)T116 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2bemA)S118 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTH 2bemA 112 :ARHS T0547 534 :T 2bemA 117 :T T0547 536 :AI 2bemA 119 :WR Number of specific fragments extracted= 3 number of extra gaps= 2 total=78021 # 2b0aA.529.156 read from T0547.t04.many.frag # found chain 2b0aA in training set Warning: unaligning (T0547)E535 (2b0aA)Y163 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTHPT 2b0aA 157 :LVGKSF T0547 536 :AI 2b0aA 164 :FL Number of specific fragments extracted= 2 number of extra gaps= 1 total=78023 # 1ctt.529.252 read from T0547.t04.many.frag # found chain 1ctt in template set Warning: unaligning (T0547)E535 (1ctt)R259 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTHPT 1ctt 253 :DYPDIQ T0547 536 :AI 1ctt 260 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78025 # 2cz1B.530.173 read from T0547.t04.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)T531 (2cz1B)G175 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :F 2cz1B 174 :A T0547 532 :H 2cz1B 176 :E T0547 534 :TEAII 2cz1B 178 :PTYHV Number of specific fragments extracted= 3 number of extra gaps= 2 total=78028 # 1o75A.530.224 read from T0547.t04.many.frag # found chain 1o75A in template set T0547 530 :FTHPTEAII 1o75A 225 :FGSDAEASV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78029 # 1twfC.530.169 read from T0547.t04.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)F530 (1twfC)W170 because G (3-10) conformation "forbidden" or filtered. T0547 531 :THPTEAII 1twfC 171 :GPAAAIEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=78030 # 1ewnA.530.70 read from T0547.t04.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)T534 (1ewnA)G154 because T (delta_L) conformation "forbidden" or filtered. T0547 530 :FTHP 1ewnA 150 :FMKP T0547 535 :EAII 1ewnA 155 :TLYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78032 # 2bbdA.530.226 read from T0547.t04.many.frag # found chain 2bbdA in template set Warning: unaligning (T0547)F530 (2bbdA)N228 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (2bbdA)T232 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2bbdA)E233 because E (beta_S) conformation "forbidden" or filtered. T0547 531 :THP 2bbdA 229 :TDP T0547 536 :AII 2bbdA 234 :YEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=78034 # 1kuuA.530.178 read from T0547.t04.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)H532 (1kuuA)H181 because L (left) conformation "forbidden" or filtered. T0547 530 :FT 1kuuA 179 :FT T0547 533 :PTEAII 1kuuA 182 :PVTAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=78036 # 1pgs.530.106 read from T0547.t04.many.frag # found chain 1pgs in training set T0547 530 :FTHPTEAII 1pgs 107 :LSGNTELKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=78037 # 1ten.530.25 read from T0547.t04.many.frag # found chain 1ten in training set Warning: unaligning (T0547)P533 (1ten)I830 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1ten)G832 because Y (epsilon') conformation "forbidden" or filtered. T0547 530 :FTH 1ten 827 :LAE T0547 534 :T 1ten 831 :D T0547 536 :AII 1ten 833 :IEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=78040 # 1vcaA.530.62 read from T0547.t04.many.frag # found chain 1vcaA in training set T0547 530 :FTHPTEAII 1vcaA 63 :FGNEHSYLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=78041 # 1hxxA.530.129 read from T0547.t04.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1hxxA)G135 because L (left) conformation "forbidden" or filtered. T0547 530 :FTH 1hxxA 130 :VGR T0547 534 :T 1hxxA 134 :G T0547 536 :AII 1hxxA 136 :VAT Number of specific fragments extracted= 3 number of extra gaps= 2 total=78044 # 1k8kC.530.25 read from T0547.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)N29 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)N29 T0547 530 :FT 1k8kC 26 :CP T0547 534 :TEAII 1k8kC 30 :HEVHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=78046 # 1t0tV.530.134 read from T0547.t04.many.frag # found chain 1t0tV in training set T0547 530 :FTHPTEAII 1t0tV 135 :LPKTNYICF Number of specific fragments extracted= 1 number of extra gaps= 0 total=78047 # 1w99A.530.234 read from T0547.t04.many.frag # found chain 1w99A in training set T0547 530 :FTHPTEAII 1w99A 318 :FTWLKRVDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=78048 # 1sacA.530.87 read from T0547.t04.many.frag # found chain 1sacA in template set Warning: unaligning (T0547)T531 (1sacA)P89 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1sacA)A90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1sacA)H93 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :F 1sacA 88 :F T0547 533 :PT 1sacA 91 :PV T0547 536 :AII 1sacA 94 :ICV Number of specific fragments extracted= 3 number of extra gaps= 2 total=78051 # 1lb6A.530.77 read from T0547.t04.many.frag # found chain 1lb6A in training set Warning: unaligning (T0547)T531 (1lb6A)P425 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1lb6A)Q427 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :F 1lb6A 424 :W T0547 532 :H 1lb6A 426 :F T0547 534 :TEAII 1lb6A 428 :GTIRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=78054 # 1ouwA.530.23 read from T0547.t04.many.frag # found chain 1ouwA in training set Warning: unaligning (T0547)A536 (1ouwA)I31 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FTHPTE 1ouwA 25 :VNKINQ T0547 537 :II 1ouwA 32 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=78056 # 1ctt.530.253 read from T0547.t04.many.frag # found chain 1ctt in template set T0547 530 :FTHPTEAII 1ctt 254 :YPDIQRAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=78057 # 1jlyA.530.104 read from T0547.t04.many.frag # found chain 1jlyA in template set Warning: unaligning (T0547)T531 (1jlyA)G105 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1jlyA)M107 because G (3-10) conformation "forbidden" or filtered. T0547 530 :F 1jlyA 104 :E T0547 532 :H 1jlyA 106 :N T0547 534 :TEAII 1jlyA 108 :KKVRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=78060 # 2ayh.530.140 read from T0547.t04.many.frag # found chain 2ayh in training set T0547 530 :FTHPTEAII 2ayh 141 :SKGFHTYAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=78061 # 2biwA.530.69 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)A536 (2biwA)T76 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FTHPTE 2biwA 70 :DGDGMV T0547 537 :II 2biwA 77 :AF Number of specific fragments extracted= 2 number of extra gaps= 1 total=78063 # 1sh8A.530.78 read from T0547.t04.many.frag # found chain 1sh8A in training set T0547 530 :FTHPTEAII 1sh8A 77 :YPIVKEMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=78064 # 1ydxA.530.294 read from T0547.t04.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1ydxA)T275 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1ydxA)T275 T0547 530 :FT 1ydxA 272 :FN T0547 534 :TEAII 1ydxA 276 :GSIAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=78066 # 1dmhA.530.218 read from T0547.t04.many.frag # found chain 1dmhA in training set T0547 530 :FTHPTEAII 1dmhA 219 :GNRPAHIHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=78067 # 1wckA.530.182 read from T0547.t04.many.frag # found chain 1wckA in training set T0547 530 :FTHPTEAII 1wckA 183 :TTTPSLVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78068 # 1crzA.530.268 read from T0547.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)P533 (1crzA)S278 because L (left) conformation "forbidden" or filtered. T0547 530 :FTH 1crzA 275 :FPD T0547 534 :TEAII 1crzA 279 :QNLAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=78070 # 1qlmA.530.282 read from T0547.t04.many.frag # found chain 1qlmA in template set T0547 530 :FTHPTEAII 1qlmA 283 :VFAPARVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78071 # 1tzpA.530.184 read from T0547.t04.many.frag # found chain 1tzpA in training set Warning: unaligning (T0547)T531 (1tzpA)Q205 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1tzpA)H209 because Y (epsilon') conformation "forbidden" or filtered. T0547 530 :F 1tzpA 204 :F T0547 532 :HPT 1tzpA 206 :HRA T0547 536 :AII 1tzpA 210 :MHV Number of specific fragments extracted= 3 number of extra gaps= 2 total=78074 # 1jhjA.530.86 read from T0547.t04.many.frag # found chain 1jhjA in training set T0547 530 :FTHPTEAII 1jhjA 88 :SYTPSKISV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78075 # 2bemA.530.85 read from T0547.t04.many.frag # found chain 2bemA in training set Warning: unaligning (T0547)P533 (2bemA)T116 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2bemA)S118 because Y (epsilon') conformation "forbidden" or filtered. T0547 530 :FTH 2bemA 113 :RHS T0547 534 :T 2bemA 117 :T T0547 536 :AII 2bemA 119 :WRY Number of specific fragments extracted= 3 number of extra gaps= 2 total=78078 # 1jihA.530.436 read from T0547.t04.many.frag # found chain 1jihA in template set T0547 530 :FTHPTEAII 1jihA 437 :IVIPRTVSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=78079 # 2cz1B.531.174 read from T0547.t04.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 531 :TH 2cz1B 175 :GE T0547 534 :TEAIIS 2cz1B 178 :PTYHVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=78081 # 1ud9A.531.208 read from T0547.t04.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :TH 1ud9A 209 :KL T0547 534 :TEAIIS 1ud9A 212 :DYVKVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=78083 # 1k8kC.531.26 read from T0547.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)N29 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)N29 T0547 531 :T 1k8kC 27 :P T0547 534 :TEAIIS 1k8kC 30 :HEVHIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=78085 # 1jlyA.531.105 read from T0547.t04.many.frag # found chain 1jlyA in template set Warning: unaligning (T0547)P533 (1jlyA)M107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S539 (1jlyA)L113 because P (beta_P) conformation "forbidden" or filtered. T0547 531 :TH 1jlyA 105 :GN T0547 534 :TEAII 1jlyA 108 :KKVRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=78087 # 1vcaA.531.63 read from T0547.t04.many.frag # found chain 1vcaA in training set T0547 531 :THPTEAIIS 1vcaA 64 :GNEHSYLCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=78088 # 1ydxA.531.295 read from T0547.t04.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1ydxA)T275 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1ydxA)T275 T0547 531 :T 1ydxA 273 :N T0547 534 :TEAIIS 1ydxA 276 :GSIALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=78090 # 1vbvA.531.46 read from T0547.t04.many.frag # found chain 1vbvA in template set Warning: unaligning (T0547)H532 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)A48 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vbvA)P50 Warning: unaligning (T0547)T534 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)P50 Warning: unaligning (T0547)E535 (1vbvA)W51 because E (beta_S) conformation "forbidden" or filtered. T0547 536 :AIIS 1vbvA 52 :YHVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78091 # 1crzA.531.269 read from T0547.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)P533 (1crzA)S278 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1crzA)N280 because E (beta_S) conformation "forbidden" or filtered. T0547 531 :TH 1crzA 276 :PD T0547 534 :T 1crzA 279 :Q T0547 536 :AIIS 1crzA 281 :LAFT Number of specific fragments extracted= 3 number of extra gaps= 2 total=78094 # 1ewnA.531.71 read from T0547.t04.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)T534 (1ewnA)G154 because T (delta_L) conformation "forbidden" or filtered. T0547 531 :THP 1ewnA 151 :MKP T0547 535 :EAIIS 1ewnA 155 :TLYVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=78096 # 1wckA.531.183 read from T0547.t04.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)P533 (1wckA)P186 because C (cis) conformation "forbidden" or filtered. T0547 531 :TH 1wckA 184 :TT T0547 534 :TEAIIS 1wckA 187 :SLVEVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=78098 # 1o75A.531.225 read from T0547.t04.many.frag # found chain 1o75A in template set T0547 531 :THPTEAIIS 1o75A 226 :GSDAEASVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=78099 # 1ten.531.26 read from T0547.t04.many.frag # found chain 1ten in training set Warning: unaligning (T0547)P533 (1ten)I830 because E (beta_S) conformation "forbidden" or filtered. T0547 531 :TH 1ten 828 :AE T0547 534 :TEAIIS 1ten 831 :DGIELT Number of specific fragments extracted= 2 number of extra gaps= 1 total=78101 # 2bbdA.531.227 read from T0547.t04.many.frag # found chain 2bbdA in template set T0547 531 :THPTEAIIS 2bbdA 229 :TDPTEYELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=78102 # 1kjlA.531.99 read from T0547.t04.many.frag # found chain 1kjlA in template set T0547 531 :THPTEAIIS 1kjlA 204 :VEPDHFKVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=78103 # 1ouwA.531.24 read from T0547.t04.many.frag # found chain 1ouwA in training set T0547 531 :THPTEAIIS 1ouwA 26 :NKINQIVIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=78104 # 1zh1A.531.78 read from T0547.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)P533 (1zh1A)E116 because G (3-10) conformation "forbidden" or filtered. T0547 531 :TH 1zh1A 114 :AA T0547 534 :TEAIIS 1zh1A 117 :EYVEVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=78106 # 1hxxA.531.130 read from T0547.t04.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)T531 (1hxxA)G131 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1hxxA)G135 because L (left) conformation "forbidden" or filtered. T0547 532 :H 1hxxA 132 :R T0547 534 :T 1hxxA 134 :G T0547 536 :AIIS 1hxxA 136 :VATY Number of specific fragments extracted= 3 number of extra gaps= 3 total=78109 # 1tzpA.531.185 read from T0547.t04.many.frag # found chain 1tzpA in training set Warning: unaligning (T0547)E535 (1tzpA)H209 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1tzpA)M210 because E (beta_S) conformation "forbidden" or filtered. T0547 531 :THPT 1tzpA 205 :QHRA T0547 537 :IIS 1tzpA 211 :HVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=78111 # 1dmhA.531.219 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E535 (1dmhA)H224 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :THPT 1dmhA 220 :NRPA T0547 536 :AIIS 1dmhA 225 :IHYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=78113 # 2ayh.531.141 read from T0547.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)H532 (2ayh)G143 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :T 2ayh 142 :K T0547 533 :PTEAIIS 2ayh 144 :FHTYAFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=78115 # 1ctt.531.254 read from T0547.t04.many.frag # found chain 1ctt in template set T0547 531 :THPTEAIIS 1ctt 255 :PDIQRAVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=78116 # 1kuuA.531.179 read from T0547.t04.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)H532 (1kuuA)H181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1kuuA)A185 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :T 1kuuA 180 :T T0547 533 :PTE 1kuuA 182 :PVT T0547 537 :IIS 1kuuA 186 :AAA Number of specific fragments extracted= 3 number of extra gaps= 2 total=78119 # 1ze3C.531.134 read from T0547.t04.many.frag # found chain 1ze3C in template set T0547 531 :THPTEAIIS 1ze3C 135 :RSANSLTLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=78120 # 1qlmA.531.283 read from T0547.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)H532 (1qlmA)A285 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :T 1qlmA 284 :F T0547 533 :PTEAIIS 1qlmA 286 :PARVVVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=78122 # 1k3iA.531.96 read from T0547.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0547)A536 (1k3iA)H85 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :THPTE 1k3iA 80 :GWIGR T0547 537 :IIS 1k3iA 86 :EVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=78124 # 2brfA.531.45 read from T0547.t04.many.frag # found chain 2brfA in training set T0547 531 :THPTEAIIS 2brfA 46 :CSRTQVELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78125 # 1sacA.531.88 read from T0547.t04.many.frag # found chain 1sacA in template set Warning: unaligning (T0547)T531 (1sacA)P89 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1sacA)A90 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PTEAIIS 1sacA 91 :PVHICVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=78126 # 2biwA.531.70 read from T0547.t04.many.frag # found chain 2biwA in template set T0547 531 :THPTEAIIS 2biwA 71 :GDGMVTAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=78127 # 2erfA.531.98 read from T0547.t04.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)P533 (2erfA)A107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2erfA)T109 because E (beta_S) conformation "forbidden" or filtered. T0547 531 :TH 2erfA 105 :GK T0547 534 :T 2erfA 108 :G T0547 536 :AIIS 2erfA 110 :LDLS Number of specific fragments extracted= 3 number of extra gaps= 2 total=78130 # 1pgs.531.107 read from T0547.t04.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)H532 (1pgs)G109 because S (epsilon) conformation "forbidden" or filtered. T0547 531 :T 1pgs 108 :S T0547 533 :PTEAIIS 1pgs 110 :NTELKIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=78132 # 2cz1B.532.175 read from T0547.t04.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :H 2cz1B 176 :E T0547 534 :TEAIISI 2cz1B 178 :PTYHVKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=78134 # 1k8kC.532.27 read from T0547.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)N29 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)N29 Warning: unaligning (T0547)E535 (1k8kC)E31 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :T 1k8kC 30 :H T0547 536 :AIISI 1k8kC 32 :VHIYE Number of specific fragments extracted= 2 number of extra gaps= 2 total=78136 # 1ud9A.532.209 read from T0547.t04.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 532 :H 1ud9A 210 :L T0547 534 :TEAIISI 1ud9A 212 :DYVKVAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=78138 # 1ctt.532.255 read from T0547.t04.many.frag # found chain 1ctt in template set Warning: unaligning (T0547)I540 (1ctt)E264 because Y (epsilon') conformation "forbidden" or filtered. T0547 532 :HPTEAIIS 1ctt 256 :DIQRAVLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=78139 # 1vbvA.532.47 read from T0547.t04.many.frag # found chain 1vbvA in template set Warning: unaligning (T0547)H532 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)A48 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vbvA)P50 Warning: unaligning (T0547)T534 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)P50 T0547 535 :EAIISI 1vbvA 51 :WYHVVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=78140 # 1zh1A.532.79 read from T0547.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)P533 (1zh1A)E116 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1zh1A)Y118 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :H 1zh1A 115 :A T0547 534 :T 1zh1A 117 :E T0547 536 :AIISI 1zh1A 119 :VEVTR Number of specific fragments extracted= 3 number of extra gaps= 2 total=78143 # 1o75A.532.226 read from T0547.t04.many.frag # found chain 1o75A in template set T0547 532 :HPTEAIISI 1o75A 227 :SDAEASVML Number of specific fragments extracted= 1 number of extra gaps= 0 total=78144 # 2bbdA.532.228 read from T0547.t04.many.frag # found chain 2bbdA in template set T0547 532 :HPTEAIISI 2bbdA 230 :DPTEYELKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=78145 # 1crzA.532.270 read from T0547.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)P533 (1crzA)S278 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S539 (1crzA)T284 because P (beta_P) conformation "forbidden" or filtered. T0547 532 :H 1crzA 277 :D T0547 534 :TEAII 1crzA 279 :QNLAF T0547 540 :I 1crzA 285 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=78148 # 1dmhA.532.220 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E535 (1dmhA)H224 because Y (epsilon') conformation "forbidden" or filtered. T0547 532 :HPT 1dmhA 221 :RPA T0547 536 :AIISI 1dmhA 225 :IHYFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78150 # 1jlyA.532.106 read from T0547.t04.many.frag # found chain 1jlyA in template set Warning: unaligning (T0547)P533 (1jlyA)M107 because G (3-10) conformation "forbidden" or filtered. T0547 532 :H 1jlyA 106 :N T0547 534 :TEAIISI 1jlyA 108 :KKVRLLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=78152 # 2brfA.532.46 read from T0547.t04.many.frag # found chain 2brfA in training set T0547 532 :HPTEAIISI 2brfA 47 :SRTQVELVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=78153 # 1vcaA.532.64 read from T0547.t04.many.frag # found chain 1vcaA in training set T0547 532 :HPTEAIISI 1vcaA 65 :NEHSYLCTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=78154 # 1ydxA.532.296 read from T0547.t04.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1ydxA)T275 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1ydxA)T275 T0547 534 :TEAIISI 1ydxA 276 :GSIALEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=78155 # 1g6gA.532.56 read from T0547.t04.many.frag # found chain 1g6gA in training set Warning: unaligning (T0547)H532 (1g6gA)S85 because P (beta_P) conformation "forbidden" or filtered. T0547 533 :PTEAIISI 1g6gA 86 :NKHFQILL Number of specific fragments extracted= 1 number of extra gaps= 1 total=78156 # 1ujcA.532.129 read from T0547.t04.many.frag # found chain 1ujcA in template set Warning: unaligning (T0547)P533 (1ujcA)S131 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S539 (1ujcA)T137 because P (beta_P) conformation "forbidden" or filtered. T0547 532 :H 1ujcA 130 :T T0547 534 :TEAII 1ujcA 132 :AIASV T0547 540 :I 1ujcA 138 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=78159 # 1v5iB.532.0 read from T0547.t04.many.frag # found chain 1v5iB in training set Warning: unaligning (T0547)H532 because first residue in template chain is (1v5iB)S1 Warning: unaligning (T0547)P533 (1v5iB)A2 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1v5iB)K4 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :T 1v5iB 3 :G T0547 536 :AIISI 1v5iB 5 :FIVIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=78161 # 2erfA.532.99 read from T0547.t04.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)P533 (2erfA)A107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (2erfA)G108 because L (left) conformation "forbidden" or filtered. T0547 532 :H 2erfA 106 :K T0547 535 :EAIISI 2erfA 109 :TLDLSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=78163 # 1xipA.532.244 read from T0547.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)P533 (1xipA)Q245 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :H 1xipA 244 :D T0547 534 :TEAIISI 1xipA 246 :KMYIIKH Number of specific fragments extracted= 2 number of extra gaps= 1 total=78165 # 1wckA.532.184 read from T0547.t04.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)P533 (1wckA)P186 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1wckA)L188 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :H 1wckA 185 :T T0547 534 :T 1wckA 187 :S T0547 536 :AIISI 1wckA 189 :VEVIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=78168 # 1v04A.532.137 read from T0547.t04.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)P533 (1v04A)S139 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1v04A)E142 because P (beta_P) conformation "forbidden" or filtered. T0547 532 :H 1v04A 138 :S T0547 534 :TE 1v04A 140 :TV T0547 537 :IISI 1v04A 143 :VFKF Number of specific fragments extracted= 3 number of extra gaps= 2 total=78171 # 1m4jA.532.23 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)P533 (1m4jA)Y25 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :H 1m4jA 24 :K T0547 534 :TEAIISI 1m4jA 26 :RLLKISI Number of specific fragments extracted= 2 number of extra gaps= 1 total=78173 # 2ayh.532.142 read from T0547.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)H532 (2ayh)G143 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PTEAIISI 2ayh 144 :FHTYAFDW Number of specific fragments extracted= 1 number of extra gaps= 1 total=78174 # 2biwA.532.71 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)E535 (2biwA)V75 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (2biwA)T76 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :HPT 2biwA 72 :DGM T0547 537 :IISI 2biwA 77 :AFKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=78176 # 3proC.532.123 read from T0547.t04.many.frag # found chain 3proC in training set Warning: unaligning (T0547)P533 (3proC)S125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (3proC)A127 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (3proC)V128 because P (beta_P) conformation "forbidden" or filtered. T0547 532 :H 3proC 124 :R T0547 534 :T 3proC 126 :N T0547 537 :IISI 3proC 129 :VVKV Number of specific fragments extracted= 3 number of extra gaps= 2 total=78179 # 2nlrA.532.25 read from T0547.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)P533 (2nlrA)T27 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2nlrA)P29 because P (beta_P) conformation "forbidden" or filtered. T0547 532 :H 2nlrA 26 :S T0547 534 :T 2nlrA 28 :A T0547 536 :AIISI 2nlrA 30 :QCVTA Number of specific fragments extracted= 3 number of extra gaps= 2 total=78182 # 1kjlA.532.100 read from T0547.t04.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)A536 (1kjlA)F209 because P (beta_P) conformation "forbidden" or filtered. T0547 532 :HPTE 1kjlA 205 :EPDH T0547 537 :IISI 1kjlA 210 :KVAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78184 # 1kuuA.532.180 read from T0547.t04.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)H532 (1kuuA)H181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1kuuA)T184 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PT 1kuuA 182 :PV T0547 536 :AIISI 1kuuA 185 :AAAAF Number of specific fragments extracted= 2 number of extra gaps= 2 total=78186 # 1u7lA.532.323 read from T0547.t04.many.frag # found chain 1u7lA in training set Warning: unaligning (T0547)P533 (1u7lA)F325 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :H 1u7lA 324 :H T0547 534 :TEAIISI 1u7lA 326 :NIKIIAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78188 # 1xyiA.532.25 read from T0547.t04.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)I538 (1xyiA)F32 because Y (epsilon') conformation "forbidden" or filtered. T0547 532 :HPTEAI 1xyiA 26 :AGKAVS T0547 539 :SI 1xyiA 33 :TY Number of specific fragments extracted= 2 number of extra gaps= 1 total=78190 # 2cz1B.533.176 read from T0547.t04.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (2cz1B)A185 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :TEAIISI 2cz1B 178 :PTYHVKF Number of specific fragments extracted= 1 number of extra gaps= 2 total=78191 # 1ud9A.533.210 read from T0547.t04.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1ud9A)V214 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :TE 1ud9A 212 :DY T0547 537 :IISIN 1ud9A 215 :KVAFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=78193 # 1k8kC.533.28 read from T0547.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)N29 Warning: unaligning (T0547)E535 (1k8kC)E31 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1k8kC)K37 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :T 1k8kC 30 :H T0547 536 :AIISI 1k8kC 32 :VHIYE Number of specific fragments extracted= 2 number of extra gaps= 3 total=78195 # 1o75A.533.227 read from T0547.t04.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)E535 (1o75A)E230 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1o75A)K236 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PT 1o75A 228 :DA T0547 536 :AIISI 1o75A 231 :ASVML Number of specific fragments extracted= 2 number of extra gaps= 2 total=78197 # 1dmhA.533.221 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E535 (1dmhA)H224 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PT 1dmhA 222 :PA T0547 536 :AIISIN 1dmhA 225 :IHYFVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=78199 # 2brfA.533.47 read from T0547.t04.many.frag # found chain 2brfA in training set T0547 533 :PTEAIISIN 2brfA 48 :RTQVELVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=78200 # 1ctt.533.256 read from T0547.t04.many.frag # found chain 1ctt in template set Warning: unaligning (T0547)N541 (1ctt)K265 because P (beta_P) conformation "forbidden" or filtered. T0547 533 :PTEAIISI 1ctt 257 :IQRAVLAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=78201 # 1v04A.533.138 read from T0547.t04.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)P533 (1v04A)S139 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1v04A 140 :TVEVFKFQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=78202 # 1crzA.533.271 read from T0547.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)P533 (1crzA)S278 because L (left) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1crzA 279 :QNLAFTSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=78203 # 2bbdA.533.229 read from T0547.t04.many.frag # found chain 2bbdA in template set Warning: unaligning (T0547)E535 (2bbdA)E233 because E (beta_S) conformation "forbidden" or filtered. T0547 533 :PT 2bbdA 231 :PT T0547 536 :AIISIN 2bbdA 234 :YELKIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78205 # 1vbvA.533.48 read from T0547.t04.many.frag # found chain 1vbvA in template set Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vbvA)P50 Warning: unaligning (T0547)T534 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)P50 T0547 535 :EAIISIN 1vbvA 51 :WYHVVME Number of specific fragments extracted= 1 number of extra gaps= 1 total=78206 # 1zh1A.533.80 read from T0547.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)P533 (1zh1A)E116 because G (3-10) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1zh1A 117 :EYVEVTRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=78207 # 1ujcA.533.130 read from T0547.t04.many.frag # found chain 1ujcA in template set Warning: unaligning (T0547)P533 (1ujcA)S131 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1ujcA)D139 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :TEAIISI 1ujcA 132 :AIASVTL Number of specific fragments extracted= 1 number of extra gaps= 2 total=78208 # 1vcaA.533.65 read from T0547.t04.many.frag # found chain 1vcaA in training set T0547 533 :PTEAIISIN 1vcaA 66 :EHSYLCTAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=78209 # 2biwA.533.72 read from T0547.t04.many.frag # found chain 2biwA in template set T0547 533 :PTEAIISIN 2biwA 73 :GMVTAFKFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=78210 # 1xipA.533.245 read from T0547.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)P533 (1xipA)Q245 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1xipA 246 :KMYIIKHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=78211 # 1v5iB.533.1 read from T0547.t04.many.frag # found chain 1v5iB in training set Warning: unaligning (T0547)P533 (1v5iB)A2 because G (3-10) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1v5iB 3 :GKFIVIFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=78212 # 1ydxA.533.297 read from T0547.t04.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1ydxA)T275 T0547 534 :TEAIISIN 1ydxA 276 :GSIALEPM Number of specific fragments extracted= 1 number of extra gaps= 1 total=78213 # 1kuuA.533.181 read from T0547.t04.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)E535 (1kuuA)T184 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1kuuA)A185 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I537 (1kuuA)A186 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PT 1kuuA 182 :PV T0547 538 :ISIN 1kuuA 187 :AAFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=78215 # 1pqhA.533.57 read from T0547.t04.many.frag # found chain 1pqhA in training set Warning: unaligning (T0547)P533 (1pqhA)N41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1pqhA)A43 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :T 1pqhA 42 :E T0547 536 :AIISIN 1pqhA 44 :IDIWNV Number of specific fragments extracted= 2 number of extra gaps= 2 total=78217 # 1wcdJ.533.66 read from T0547.t04.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0547)E535 (1wcdJ)G69 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PT 1wcdJ 67 :IV T0547 536 :AIISIN 1wcdJ 70 :AHYTLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=78219 # 1u7lA.533.324 read from T0547.t04.many.frag # found chain 1u7lA in training set Warning: unaligning (T0547)P533 (1u7lA)F325 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1u7lA 326 :NIKIIAVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=78220 # 2nlrA.533.26 read from T0547.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)P533 (2nlrA)T27 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (2nlrA)Q30 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :TE 2nlrA 28 :AP T0547 537 :IISIN 2nlrA 31 :CVTAT Number of specific fragments extracted= 2 number of extra gaps= 2 total=78222 # 1g6gA.533.57 read from T0547.t04.many.frag # found chain 1g6gA in training set T0547 533 :PTEAIISIN 1g6gA 86 :NKHFQILLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=78223 # 1q9uA.533.79 read from T0547.t04.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)P533 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1q9uA)K79 Warning: unaligning (T0547)E535 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q9uA)K79 T0547 536 :AIISIN 1q9uA 80 :LVVYQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=78224 # 1m4jA.533.24 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)P533 (1m4jA)Y25 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1m4jA)L28 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :TE 1m4jA 26 :RL T0547 537 :IISIN 1m4jA 29 :KISIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=78226 # 1hxxA.533.132 read from T0547.t04.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1hxxA)G135 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1hxxA)N141 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :T 1hxxA 134 :G T0547 536 :AIISI 1hxxA 136 :VATYR Number of specific fragments extracted= 2 number of extra gaps= 3 total=78228 # 1ckmA.533.276 read from T0547.t04.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)P533 (1ckmA)G277 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1ckmA)I279 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :T 1ckmA 278 :S T0547 536 :AIISIN 1ckmA 280 :VECGFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=78230 # 2erfA.533.100 read from T0547.t04.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)P533 (2erfA)A107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (2erfA)G108 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2erfA)T109 because E (beta_S) conformation "forbidden" or filtered. T0547 536 :AIISIN 2erfA 110 :LDLSLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=78231 # 1jtgB.533.143 read from T0547.t04.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)P533 (1jtgB)R144 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1jtgB)S146 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :T 1jtgB 145 :G T0547 536 :AIISIN 1jtgB 147 :AHLWFT Number of specific fragments extracted= 2 number of extra gaps= 2 total=78233 # 1ud9A.534.211 read from T0547.t04.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)I540 (1ud9A)F218 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TEAIIS 1ud9A 212 :DYVKVA T0547 541 :NE 1ud9A 219 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=78235 # 2cz1B.534.177 read from T0547.t04.many.frag # found chain 2cz1B in training set T0547 534 :TEAIISINE 2cz1B 178 :PTYHVKFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=78236 # 1ujcA.534.131 read from T0547.t04.many.frag # found chain 1ujcA in template set T0547 534 :TEAIISINE 1ujcA 132 :AIASVTLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=78237 # 2brfA.534.48 read from T0547.t04.many.frag # found chain 2brfA in training set T0547 534 :TEAIISINE 2brfA 49 :TQVELVADP Number of specific fragments extracted= 1 number of extra gaps= 0 total=78238 # 1k8kC.534.29 read from T0547.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)N541 (1k8kC)K37 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :TEAIISI 1k8kC 30 :HEVHIYE T0547 542 :E 1k8kC 38 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=78240 # 1v04A.534.139 read from T0547.t04.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)E535 (1v04A)V141 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :T 1v04A 140 :T T0547 536 :AIISINE 1v04A 142 :EVFKFQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=78242 # 1xipA.534.246 read from T0547.t04.many.frag # found chain 1xipA in template set T0547 534 :TEAIISINE 1xipA 246 :KMYIIKHID Number of specific fragments extracted= 1 number of extra gaps= 0 total=78243 # 1dmhA.534.222 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E542 (1dmhA)A231 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1dmhA 223 :AHIHYFVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=78244 # 1o75A.534.228 read from T0547.t04.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)N541 (1o75A)K236 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TEAIISI 1o75A 229 :AEASVML T0547 542 :E 1o75A 237 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=78246 # 2biwA.534.73 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)E542 (2biwA)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 2biwA 74 :MVTAFKFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=78247 # 1vbvA.534.49 read from T0547.t04.many.frag # found chain 1vbvA in template set Warning: unaligning (T0547)T534 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)P50 T0547 535 :EAIISINE 1vbvA 51 :WYHVVMED Number of specific fragments extracted= 1 number of extra gaps= 1 total=78248 # 1zh1A.534.81 read from T0547.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E542 (1zh1A)G125 because S (epsilon) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1zh1A 117 :EYVEVTRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=78249 # 1ctt.534.257 read from T0547.t04.many.frag # found chain 1ctt in template set Warning: unaligning (T0547)I540 (1ctt)E264 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1ctt)D267 T0547 534 :TEAIIS 1ctt 258 :QRAVLA T0547 541 :N 1ctt 265 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=78251 # 2bbdA.534.230 read from T0547.t04.many.frag # found chain 2bbdA in template set T0547 534 :TEAIISINE 2bbdA 232 :TEYELKIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=78252 # 1crzA.534.272 read from T0547.t04.many.frag # found chain 1crzA in template set T0547 534 :TEAIISINE 1crzA 279 :QNLAFTSDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=78253 # 1vcaA.534.66 read from T0547.t04.many.frag # found chain 1vcaA in training set T0547 534 :TEAIISINE 1vcaA 67 :HSYLCTATC Number of specific fragments extracted= 1 number of extra gaps= 0 total=78254 # 1q9uA.534.80 read from T0547.t04.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)E535 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q9uA)K79 Warning: unaligning (T0547)S539 (1q9uA)Y83 because Y (epsilon') conformation "forbidden" or filtered. T0547 536 :AII 1q9uA 80 :LVV T0547 540 :INE 1q9uA 84 :QEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=78256 # 1wcdJ.534.67 read from T0547.t04.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0547)E535 (1wcdJ)G69 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :T 1wcdJ 68 :V T0547 536 :AIISINE 1wcdJ 70 :AHYTLQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=78258 # 1v5iB.534.2 read from T0547.t04.many.frag # found chain 1v5iB in training set T0547 534 :TEAIISINE 1v5iB 3 :GKFIVIFKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=78259 # 1m4jA.534.25 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)E542 (1m4jA)N34 because L (left) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1m4jA 26 :RLLKISIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=78260 # 1ckmA.534.277 read from T0547.t04.many.frag # found chain 1ckmA in template set T0547 534 :TEAIISINE 1ckmA 278 :SIVECGFAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=78261 # 1pqhA.534.58 read from T0547.t04.many.frag # found chain 1pqhA in training set Warning: unaligning (T0547)E535 (1pqhA)A43 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :T 1pqhA 42 :E T0547 536 :AIISINE 1pqhA 44 :IDIWNVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=78263 # 1u7lA.534.325 read from T0547.t04.many.frag # found chain 1u7lA in training set Warning: unaligning (T0547)N541 (1u7lA)P333 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :TEAIISI 1u7lA 326 :NIKIIAV T0547 542 :E 1u7lA 334 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=78265 # 1xyiA.534.27 read from T0547.t04.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)I538 (1xyiA)F32 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TEAI 1xyiA 28 :KAVS T0547 539 :SINE 1xyiA 33 :TYDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=78267 # 1kuuA.534.182 read from T0547.t04.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)N541 (1kuuA)N190 because D (zeta) conformation "forbidden" or filtered. T0547 534 :TEAIISI 1kuuA 183 :VTAAAAF T0547 542 :E 1kuuA 191 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=78269 # 1ydxA.534.298 read from T0547.t04.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)E542 (1ydxA)N284 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1ydxA 276 :GSIALEPM Number of specific fragments extracted= 1 number of extra gaps= 1 total=78270 # 1jtgB.534.144 read from T0547.t04.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)T534 (1jtgB)G145 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1jtgB)S146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1jtgB)D153 because L (left) conformation "forbidden" or filtered. T0547 536 :AIISIN 1jtgB 147 :AHLWFT Number of specific fragments extracted= 1 number of extra gaps= 2 total=78271 # 2nlrA.534.27 read from T0547.t04.many.frag # found chain 2nlrA in training set T0547 534 :TEAIISINE 2nlrA 28 :APQCVTATD Number of specific fragments extracted= 1 number of extra gaps= 0 total=78272 # 2erfA.534.101 read from T0547.t04.many.frag # found chain 2erfA in training set T0547 534 :TEAIISINE 2erfA 108 :GTLDLSLTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78273 # 1g6gA.534.58 read from T0547.t04.many.frag # found chain 1g6gA in training set T0547 534 :TEAIISINE 1g6gA 87 :KHFQILLGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=78274 # 1ud9A.535.212 read from T0547.t04.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)E542 (1ud9A)D220 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1ud9A)Q221 because L (left) conformation "forbidden" or filtered. T0547 535 :EAIISIN 1ud9A 213 :YVKVAFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=78275 # 1xipA.535.247 read from T0547.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)E542 (1xipA)D254 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xipA)G255 because L (left) conformation "forbidden" or filtered. T0547 535 :EAIISIN 1xipA 247 :MYIIKHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=78276 # 1ujcA.535.132 read from T0547.t04.many.frag # found chain 1ujcA in template set T0547 535 :EAIISINEK 1ujcA 133 :IASVTLDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=78277 # 2brfA.535.49 read from T0547.t04.many.frag # found chain 2brfA in training set T0547 535 :EAIISINEK 2brfA 50 :QVELVADPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=78278 # 1ctt.535.258 read from T0547.t04.many.frag # found chain 1ctt in template set Warning: unaligning (T0547)N541 (1ctt)K265 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1ctt)D267 Warning: unaligning (T0547)K543 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ctt)D267 T0547 535 :EAIISI 1ctt 259 :RAVLAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=78279 # 1ydxA.535.299 read from T0547.t04.many.frag # found chain 1ydxA in template set T0547 535 :EAIISINEK 1ydxA 277 :SIALEPMNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=78280 # 1k8kC.535.30 read from T0547.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)A536 (1k8kC)V32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1k8kC)S38 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1k8kC)G39 because S (epsilon) conformation "forbidden" or filtered. T0547 535 :E 1k8kC 31 :E T0547 537 :IISIN 1k8kC 33 :HIYEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=78282 # 1q9uA.535.81 read from T0547.t04.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)E535 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q9uA)K79 Warning: unaligning (T0547)S539 (1q9uA)Y83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1q9uA)N86 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1q9uA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 536 :AII 1q9uA 80 :LVV T0547 540 :IN 1q9uA 84 :QE Number of specific fragments extracted= 2 number of extra gaps= 2 total=78284 # 2biwA.535.74 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)E542 (2biwA)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 535 :EAIISIN 2biwA 75 :VTAFKFP T0547 543 :K 2biwA 83 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=78286 # 1v04A.535.140 read from T0547.t04.many.frag # found chain 1v04A in template set T0547 535 :EAIISINEK 1v04A 141 :VEVFKFQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=78287 # 1zh1A.535.82 read from T0547.t04.many.frag # found chain 1zh1A in template set T0547 535 :EAIISINEK 1zh1A 118 :YVEVTRVGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=78288 # 1v5iB.535.3 read from T0547.t04.many.frag # found chain 1v5iB in training set T0547 535 :EAIISINEK 1v5iB 4 :KFIVIFKND Number of specific fragments extracted= 1 number of extra gaps= 0 total=78289 # 2ayh.535.145 read from T0547.t04.many.frag # found chain 2ayh in training set T0547 535 :EAIISINEK 2ayh 146 :TYAFDWQPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=78290 # 1vbvA.535.50 read from T0547.t04.many.frag # found chain 1vbvA in template set Warning: unaligning (T0547)N541 (1vbvA)E57 because P (beta_P) conformation "forbidden" or filtered. T0547 535 :EAIISI 1vbvA 51 :WYHVVM T0547 542 :EK 1vbvA 58 :DD Number of specific fragments extracted= 2 number of extra gaps= 1 total=78292 # 1m4jA.535.26 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)K543 (1m4jA)E35 because L (left) conformation "forbidden" or filtered. T0547 535 :EAIISINE 1m4jA 27 :LLKISIEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=78293 # 1crzA.535.273 read from T0547.t04.many.frag # found chain 1crzA in template set T0547 535 :EAIISINEK 1crzA 280 :NLAFTSDQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=78294 # 1xkpC.535.32 read from T0547.t04.many.frag # found chain 1xkpC in training set Warning: unaligning (T0547)E542 (1xkpC)G40 because S (epsilon) conformation "forbidden" or filtered. T0547 535 :EAIISIN 1xkpC 33 :LVMLAPH T0547 543 :K 1xkpC 41 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=78296 # 1u7lA.535.326 read from T0547.t04.many.frag # found chain 1u7lA in training set T0547 535 :EAIISINEK 1u7lA 327 :IKIIAVPPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=78297 # 1wcdJ.535.68 read from T0547.t04.many.frag # found chain 1wcdJ in template set T0547 535 :EAIISINEK 1wcdJ 69 :GAHYTLQGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=78298 # 1xyiA.535.28 read from T0547.t04.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)I538 (1xyiA)F32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I540 (1xyiA)Y34 because Y (epsilon') conformation "forbidden" or filtered. T0547 535 :EAI 1xyiA 29 :AVS T0547 539 :S 1xyiA 33 :T T0547 541 :NEK 1xyiA 35 :DDN Number of specific fragments extracted= 3 number of extra gaps= 2 total=78301 # 1g6gA.535.59 read from T0547.t04.many.frag # found chain 1g6gA in training set T0547 535 :EAIISINEK 1g6gA 88 :HFQILLGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=78302 # 2bbdA.535.231 read from T0547.t04.many.frag # found chain 2bbdA in template set T0547 535 :EAIISINEK 2bbdA 233 :EYELKIVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=78303 # 1pqhA.535.59 read from T0547.t04.many.frag # found chain 1pqhA in training set Warning: unaligning (T0547)A536 (1pqhA)I44 because E (beta_S) conformation "forbidden" or filtered. T0547 535 :E 1pqhA 43 :A T0547 537 :IISINEK 1pqhA 45 :DIWNVTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=78305 # 1dmhA.535.223 read from T0547.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)N541 (1dmhA)S230 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1dmhA)A231 because Y (epsilon') conformation "forbidden" or filtered. T0547 535 :EAIISI 1dmhA 224 :HIHYFV T0547 543 :K 1dmhA 232 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=78307 # 1ckmA.535.278 read from T0547.t04.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)K543 (1ckmA)G287 because T (delta_L) conformation "forbidden" or filtered. T0547 535 :EAIISINE 1ckmA 279 :IVECGFAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=78308 # 1ry9A.535.53 read from T0547.t04.many.frag # found chain 1ry9A in template set Warning: unaligning (T0547)S539 (1ry9A)A46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1ry9A)N49 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1ry9A)E50 because L (left) conformation "forbidden" or filtered. T0547 535 :EAII 1ry9A 42 :AINI T0547 540 :IN 1ry9A 47 :LV Number of specific fragments extracted= 2 number of extra gaps= 2 total=78310 # 1pmmA.535.376 read from T0547.t04.many.frag # found chain 1pmmA in template set Warning: unaligning (T0547)K543 (1pmmA)G385 because T (delta_L) conformation "forbidden" or filtered. T0547 535 :EAIISINE 1pmmA 377 :AVCFKLKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=78311 # 1o75A.535.229 read from T0547.t04.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)N541 (1o75A)K236 because Y (epsilon') conformation "forbidden" or filtered. T0547 535 :EAIISI 1o75A 230 :EASVML T0547 542 :EK 1o75A 237 :RA Number of specific fragments extracted= 2 number of extra gaps= 1 total=78313 # 1sacA.535.92 read from T0547.t04.many.frag # found chain 1sacA in template set T0547 535 :EAIISINEK 1sacA 93 :HICVSWESS Number of specific fragments extracted= 1 number of extra gaps= 0 total=78314 # 1vcaA.535.67 read from T0547.t04.many.frag # found chain 1vcaA in training set T0547 535 :EAIISINEK 1vcaA 68 :SYLCTATCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=78315 # 2ayh.536.146 read from T0547.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)G544 (2ayh)Y155 because Y (epsilon') conformation "forbidden" or filtered. T0547 536 :AIISINEK 2ayh 147 :YAFDWQPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=78316 # 1ud9A.536.213 read from T0547.t04.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)E542 (1ud9A)D220 because P (beta_P) conformation "forbidden" or filtered. T0547 536 :AIISIN 1ud9A 214 :VKVAFA T0547 543 :KG 1ud9A 221 :QK Number of specific fragments extracted= 2 number of extra gaps= 1 total=78318 # 1ujcA.536.133 read from T0547.t04.many.frag # found chain 1ujcA in template set T0547 536 :AIISINEKG 1ujcA 134 :ASVTLDESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=78319 # 1xipA.536.248 read from T0547.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)E542 (1xipA)D254 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xipA)G255 because L (left) conformation "forbidden" or filtered. T0547 536 :AIISIN 1xipA 248 :YIIKHI T0547 544 :G 1xipA 256 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=78321 # 1q9uA.536.82 read from T0547.t04.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)A536 (1q9uA)L80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1q9uA)T88 because E (beta_S) conformation "forbidden" or filtered. T0547 537 :IISINEK 1q9uA 81 :VVYQENG Number of specific fragments extracted= 1 number of extra gaps= 2 total=78322 # 1w0pA.536.442 read from T0547.t04.many.frag # found chain 1w0pA in training set T0547 536 :AIISINEKG 1w0pA 443 :YELQYSALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=78323 # 1ctt.536.259 read from T0547.t04.many.frag # found chain 1ctt in template set Warning: unaligning (T0547)E542 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1ctt)D267 Warning: unaligning (T0547)K543 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ctt)D267 T0547 536 :AIISIN 1ctt 260 :AVLAEK T0547 544 :G 1ctt 268 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=78325 # 1m4jA.536.27 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)K543 (1m4jA)E35 because L (left) conformation "forbidden" or filtered. T0547 536 :AIISINE 1m4jA 28 :LKISIEN T0547 544 :G 1m4jA 36 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=78327 # 1x31D.536.66 read from T0547.t04.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)A536 (1x31D)F67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I538 (1x31D)A69 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1x31D)S75 because G (3-10) conformation "forbidden" or filtered. T0547 537 :I 1x31D 68 :N T0547 539 :SINEK 1x31D 70 :LRDTV Number of specific fragments extracted= 2 number of extra gaps= 3 total=78329 # 1zh1A.536.83 read from T0547.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E542 (1zh1A)G125 because S (epsilon) conformation "forbidden" or filtered. T0547 536 :AIISIN 1zh1A 119 :VEVTRV T0547 543 :KG 1zh1A 126 :DF Number of specific fragments extracted= 2 number of extra gaps= 1 total=78331 # 1vbvA.536.51 read from T0547.t04.many.frag # found chain 1vbvA in template set Warning: unaligning (T0547)N541 (1vbvA)E57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1vbvA)D58 because P (beta_P) conformation "forbidden" or filtered. T0547 536 :AIISI 1vbvA 52 :YHVVM T0547 543 :KG 1vbvA 59 :DN Number of specific fragments extracted= 2 number of extra gaps= 1 total=78333 # 1wruA.536.316 read from T0547.t04.many.frag # found chain 1wruA in template set Warning: unaligning (T0547)N541 (1wruA)N322 because Y (epsilon') conformation "forbidden" or filtered. T0547 536 :AIISI 1wruA 317 :VTLIL T0547 542 :EKG 1wruA 323 :DQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=78335 # 1wckA.536.188 read from T0547.t04.many.frag # found chain 1wckA in training set T0547 536 :AIISINEKG 1wckA 189 :VEVIVTGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=78336 # 2biwA.536.75 read from T0547.t04.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)A536 (2biwA)T76 because E (beta_S) conformation "forbidden" or filtered. T0547 537 :IISINEKG 2biwA 77 :AFKFPGDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=78337 # 1sacA.536.93 read from T0547.t04.many.frag # found chain 1sacA in template set T0547 536 :AIISINEKG 1sacA 94 :ICVSWESSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=78338 # 1ydxA.536.300 read from T0547.t04.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)G544 (1ydxA)E286 because G (3-10) conformation "forbidden" or filtered. T0547 536 :AIISINEK 1ydxA 278 :IALEPMNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=78339 # 1xyiA.536.29 read from T0547.t04.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. T0547 536 :AIISINE 1xyiA 30 :VSFTYDD T0547 544 :G 1xyiA 38 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=78341 # 1g6gA.536.60 read from T0547.t04.many.frag # found chain 1g6gA in training set Warning: unaligning (T0547)N541 (1g6gA)G94 because P (beta_P) conformation "forbidden" or filtered. T0547 536 :AIISI 1g6gA 89 :FQILL T0547 542 :EKG 1g6gA 95 :EDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=78343 # 2brfA.536.50 read from T0547.t04.many.frag # found chain 2brfA in training set T0547 536 :AIISINEKG 2brfA 51 :VELVADPET Number of specific fragments extracted= 1 number of extra gaps= 0 total=78344 # 1tzlA.536.282 read from T0547.t04.many.frag # found chain 1tzlA in template set T0547 536 :AIISINEKG 1tzlA 284 :ERVVRNALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=78345 # 1pqhA.536.60 read from T0547.t04.many.frag # found chain 1pqhA in training set Warning: unaligning (T0547)A536 (1pqhA)I44 because E (beta_S) conformation "forbidden" or filtered. T0547 537 :IISINEKG 1pqhA 45 :DIWNVTNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=78346 # 1iow.536.255 read from T0547.t04.many.frag # found chain 1iow in template set T0547 536 :AIISINEKG 1iow 256 :IDVMLDSDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=78347 # 1wcdJ.536.69 read from T0547.t04.many.frag # found chain 1wcdJ in template set T0547 536 :AIISINEKG 1wcdJ 70 :AHYTLQGNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=78348 # 1ouwA.536.29 read from T0547.t04.many.frag # found chain 1ouwA in training set Warning: unaligning (T0547)A536 (1ouwA)I31 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1ouwA)G37 because T (delta_L) conformation "forbidden" or filtered. T0547 537 :IISIN 1ouwA 32 :VISYG T0547 543 :KG 1ouwA 38 :GG Number of specific fragments extracted= 2 number of extra gaps= 2 total=78350 # 1dy5A.536.105 read from T0547.t04.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N541 (1dy5A)E111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1dy5A)G112 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 536 :AIISI 1dy5A 106 :IIVAC T0547 543 :K 1dy5A 113 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=78352 # 1u7lA.536.327 read from T0547.t04.many.frag # found chain 1u7lA in training set Warning: unaligning (T0547)A536 (1u7lA)K328 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1u7lA)N336 because G (3-10) conformation "forbidden" or filtered. T0547 537 :IISINEK 1u7lA 329 :IIAVPPK Number of specific fragments extracted= 1 number of extra gaps= 2 total=78353 # 1ry9A.536.54 read from T0547.t04.many.frag # found chain 1ry9A in template set Warning: unaligning (T0547)A536 (1ry9A)I43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S539 (1ry9A)A46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1ry9A)N49 because L (left) conformation "forbidden" or filtered. T0547 537 :II 1ry9A 44 :NI T0547 540 :IN 1ry9A 47 :LV T0547 543 :KG 1ry9A 50 :EQ Number of specific fragments extracted= 3 number of extra gaps= 3 total=78356 # 1ckmA.536.279 read from T0547.t04.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)A536 (1ckmA)V280 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1ckmA)G287 because T (delta_L) conformation "forbidden" or filtered. T0547 537 :IISINE 1ckmA 281 :ECGFAD T0547 544 :G 1ckmA 288 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=78358 # 2bbdA.536.232 read from T0547.t04.many.frag # found chain 2bbdA in template set Warning: unaligning (T0547)K543 (2bbdA)G241 because S (epsilon) conformation "forbidden" or filtered. T0547 536 :AIISINE 2bbdA 234 :YELKIVR T0547 544 :G 2bbdA 242 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=78360 # 1czpA.536.4 read from T0547.t04.many.frag # found chain 1czpA in training set Warning: unaligning (T0547)K543 (1czpA)E12 because G (3-10) conformation "forbidden" or filtered. T0547 536 :AIISINE 1czpA 5 :VTLINEA T0547 544 :G 1czpA 13 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=78362 # 2ayh.537.147 read from T0547.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)G544 (2ayh)Y155 because Y (epsilon') conformation "forbidden" or filtered. T0547 537 :IISINEK 2ayh 148 :AFDWQPG T0547 545 :Y 2ayh 156 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=78364 # 1wckA.537.189 read from T0547.t04.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)E542 (1wckA)G195 because S (epsilon) conformation "forbidden" or filtered. T0547 537 :IISIN 1wckA 190 :EVIVT T0547 543 :KGY 1wckA 196 :LGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=78366 # 1xipA.537.249 read from T0547.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)E542 (1xipA)D254 because L (left) conformation "forbidden" or filtered. T0547 537 :IISIN 1xipA 249 :IIKHI T0547 543 :KGY 1xipA 255 :GSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=78368 # 1wruA.537.317 read from T0547.t04.many.frag # found chain 1wruA in template set Warning: unaligning (T0547)N541 (1wruA)N322 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1wruA)G326 because S (epsilon) conformation "forbidden" or filtered. T0547 537 :IISI 1wruA 318 :TLIL T0547 542 :EKG 1wruA 323 :DQD Number of specific fragments extracted= 2 number of extra gaps= 2 total=78370 # 1ud9A.537.214 read from T0547.t04.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)N541 (1ud9A)A219 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1ud9A)K222 because E (beta_S) conformation "forbidden" or filtered. T0547 537 :IISI 1ud9A 215 :KVAF T0547 542 :EK 1ud9A 220 :DQ T0547 545 :Y 1ud9A 223 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=78373 # 1x31D.537.67 read from T0547.t04.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G544 (1x31D)S75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1x31D)Y76 because T (delta_L) conformation "forbidden" or filtered. T0547 537 :IISINEK 1x31D 68 :NALRDTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=78374 # 1m4jA.537.28 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)E542 (1m4jA)N34 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1m4jA)E35 because L (left) conformation "forbidden" or filtered. T0547 537 :IISIN 1m4jA 29 :KISIE T0547 544 :GY 1m4jA 36 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=78376 # 1ujcA.537.134 read from T0547.t04.many.frag # found chain 1ujcA in template set T0547 537 :IISINEKGY 1ujcA 135 :SVTLDESGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=78377 # 1fiqB.537.219 read from T0547.t04.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)N541 (1fiqB)Q443 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1fiqB)S446 because Y (epsilon') conformation "forbidden" or filtered. T0547 537 :IISI 1fiqB 439 :RVLF T0547 542 :E 1fiqB 444 :P T0547 545 :Y 1fiqB 447 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=78380 # 1w0pA.537.443 read from T0547.t04.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)G544 (1w0pA)N451 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1w0pA)H452 because L (left) conformation "forbidden" or filtered. T0547 537 :IISINEK 1w0pA 444 :ELQYSAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=78381 # 1ry9A.537.55 read from T0547.t04.many.frag # found chain 1ry9A in template set Warning: unaligning (T0547)S539 (1ry9A)A46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1ry9A)E50 because L (left) conformation "forbidden" or filtered. T0547 537 :II 1ry9A 44 :NI T0547 540 :INE 1ry9A 47 :LVN T0547 544 :GY 1ry9A 51 :QV Number of specific fragments extracted= 3 number of extra gaps= 2 total=78384 # 1ckmA.537.280 read from T0547.t04.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)E542 (1ckmA)D286 because L (left) conformation "forbidden" or filtered. T0547 537 :IISIN 1ckmA 281 :ECGFA T0547 543 :KGY 1ckmA 287 :GTW Number of specific fragments extracted= 2 number of extra gaps= 1 total=78386 # 1zh1A.537.84 read from T0547.t04.many.frag # found chain 1zh1A in template set T0547 537 :IISINEKGY 1zh1A 120 :EVTRVGDFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=78387 # 1g6gA.537.61 read from T0547.t04.many.frag # found chain 1g6gA in training set Warning: unaligning (T0547)N541 (1g6gA)G94 because P (beta_P) conformation "forbidden" or filtered. T0547 537 :IISI 1g6gA 90 :QILL T0547 542 :EKGY 1g6gA 95 :EDGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=78389 # 2et1A.537.75 read from T0547.t04.many.frag # found chain 2et1A in training set Warning: unaligning (T0547)K543 (2et1A)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 because of BadResidue code BAD_PEPTIDE in next template residue (2et1A)N85 T0547 537 :IISINE 2et1A 76 :RVDFAP T0547 544 :G 2et1A 83 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=78391 # 2cwsA.537.125 read from T0547.t04.many.frag # found chain 2cwsA in training set Warning: unaligning (T0547)K543 (2cwsA)G211 because T (delta_L) conformation "forbidden" or filtered. T0547 537 :IISINE 2cwsA 205 :KAVFQD T0547 544 :GY 2cwsA 212 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=78393 # 1q9uA.537.83 read from T0547.t04.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)E542 (1q9uA)N86 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1q9uA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 537 :IISIN 1q9uA 81 :VVYQE T0547 544 :GY 1q9uA 88 :TT Number of specific fragments extracted= 2 number of extra gaps= 1 total=78395 # 1sacA.537.94 read from T0547.t04.many.frag # found chain 1sacA in template set Warning: unaligning (T0547)Y545 (1sacA)G103 because T (delta_L) conformation "forbidden" or filtered. T0547 537 :IISINEKG 1sacA 95 :CVSWESSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=78396 # 1vbvA.537.52 read from T0547.t04.many.frag # found chain 1vbvA in template set Warning: unaligning (T0547)Y545 (1vbvA)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 537 :IISINEKG 1vbvA 53 :HVVMEDDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=78397 # 1pea.537.341 read from T0547.t04.many.frag # found chain 1pea in template set T0547 537 :IISINEKGY 1pea 342 :IAEIDARGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78398 # 2d1eA.537.104 read from T0547.t04.many.frag # found chain 2d1eA in training set T0547 537 :IISINEKGY 2d1eA 105 :DIVAGPGGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78399 # 1u8xX.537.383 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)N541 (1u8xX)G365 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1u8xX)G368 because S (epsilon) conformation "forbidden" or filtered. T0547 537 :IISI 1u8xX 361 :PCIV T0547 542 :EK 1u8xX 366 :SN T0547 545 :Y 1u8xX 369 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=78402 # 1c1yB.537.4 read from T0547.t04.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)E542 (1c1yB)N64 because L (left) conformation "forbidden" or filtered. T0547 537 :IISIN 1c1yB 59 :RVFLP T0547 543 :KGY 1c1yB 65 :KQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=78404 # 1dy5A.537.106 read from T0547.t04.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N541 (1dy5A)E111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 537 :IISI 1dy5A 107 :IVAC T0547 542 :EK 1dy5A 112 :GN T0547 545 :Y 1dy5A 115 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=78407 # 2nlrA.537.30 read from T0547.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)N541 (2nlrA)T35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2nlrA)G38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (2nlrA)F39 because Y (epsilon') conformation "forbidden" or filtered. T0547 537 :IISI 2nlrA 31 :CVTA T0547 542 :EK 2nlrA 36 :DT Number of specific fragments extracted= 2 number of extra gaps= 2 total=78409 # 1l8bA.537.125 read from T0547.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)G544 (1l8bA)G160 because Y (epsilon') conformation "forbidden" or filtered. T0547 537 :IISINEK 1l8bA 153 :VVNVRAK T0547 545 :Y 1l8bA 161 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=78411 # 1wubA.537.33 read from T0547.t04.many.frag # found chain 1wubA in training set T0547 537 :IISINEKGY 1wubA 34 :SVETDEAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=78412 # 1xyiA.537.30 read from T0547.t04.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)I538 (1xyiA)F32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I540 (1xyiA)Y34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. T0547 537 :I 1xyiA 31 :S T0547 539 :S 1xyiA 33 :T T0547 541 :NE 1xyiA 35 :DD T0547 544 :GY 1xyiA 38 :GK Number of specific fragments extracted= 4 number of extra gaps= 3 total=78416 # 1gqeA.537.261 read from T0547.t04.many.frag # found chain 1gqeA in template set T0547 537 :IISINEKGY 1gqeA 262 :RITHIPTGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=78417 # 2f2hA.537.714 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)E542 (2f2hA)G720 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2f2hA)T722 because E (beta_S) conformation "forbidden" or filtered. T0547 537 :IISIN 2f2hA 715 :KAART T0547 543 :K 2f2hA 721 :N T0547 545 :Y 2f2hA 723 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=78420 # 1xipA.538.250 read from T0547.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)E542 (1xipA)D254 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xipA)G255 because L (left) conformation "forbidden" or filtered. T0547 538 :ISIN 1xipA 250 :IKHI T0547 544 :GYE 1xipA 256 :SAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=78422 # 1fiqB.538.220 read from T0547.t04.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1fiqB)S446 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :ISINE 1fiqB 440 :VLFQP T0547 545 :YE 1fiqB 447 :MQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=78424 # 1ry9A.538.56 read from T0547.t04.many.frag # found chain 1ry9A in template set Warning: unaligning (T0547)S539 (1ry9A)A46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1ry9A)N49 because L (left) conformation "forbidden" or filtered. T0547 538 :I 1ry9A 45 :I T0547 540 :IN 1ry9A 47 :LV T0547 543 :KGYE 1ry9A 50 :EQVM Number of specific fragments extracted= 3 number of extra gaps= 2 total=78427 # 1ckmA.538.281 read from T0547.t04.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)E542 (1ckmA)D286 because L (left) conformation "forbidden" or filtered. T0547 538 :ISIN 1ckmA 282 :CGFA T0547 543 :KGYE 1ckmA 287 :GTWK Number of specific fragments extracted= 2 number of extra gaps= 1 total=78429 # 1x31D.538.68 read from T0547.t04.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)I538 (1x31D)A69 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1x31D)E77 because P (beta_P) conformation "forbidden" or filtered. T0547 539 :SINEKGY 1x31D 70 :LRDTVSY Number of specific fragments extracted= 1 number of extra gaps= 2 total=78430 # 2ayh.538.148 read from T0547.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)G544 (2ayh)Y155 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :ISINEK 2ayh 149 :FDWQPG T0547 545 :YE 2ayh 156 :IK Number of specific fragments extracted= 2 number of extra gaps= 1 total=78432 # 1hf2A.538.188 read from T0547.t04.many.frag # found chain 1hf2A in template set T0547 538 :ISINEKGYE 1hf2A 189 :AHVKGNRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78433 # 1m4jA.538.29 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)E542 (1m4jA)N34 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1m4jA)Q36 because E (beta_S) conformation "forbidden" or filtered. T0547 538 :ISIN 1m4jA 30 :ISIE T0547 543 :K 1m4jA 35 :E T0547 545 :YE 1m4jA 37 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=78436 # 1xyiA.538.31 read from T0547.t04.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)I540 (1xyiA)Y34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. T0547 538 :IS 1xyiA 32 :FT T0547 541 :NE 1xyiA 35 :DD T0547 544 :GYE 1xyiA 38 :GKT Number of specific fragments extracted= 3 number of extra gaps= 2 total=78439 # 1u8xX.538.384 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)N541 (1u8xX)G365 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1u8xX)N367 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1u8xX)G368 because S (epsilon) conformation "forbidden" or filtered. T0547 538 :ISI 1u8xX 362 :CIV T0547 542 :E 1u8xX 366 :S T0547 545 :YE 1u8xX 369 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=78442 # 2cwsA.538.126 read from T0547.t04.many.frag # found chain 2cwsA in training set Warning: unaligning (T0547)N541 (2cwsA)Q209 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (2cwsA)D214 because E (beta_S) conformation "forbidden" or filtered. T0547 538 :ISI 2cwsA 206 :AVF T0547 542 :EKGY 2cwsA 210 :DGQL Number of specific fragments extracted= 2 number of extra gaps= 2 total=78444 # 1zh1A.538.85 read from T0547.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E542 (1zh1A)G125 because S (epsilon) conformation "forbidden" or filtered. T0547 538 :ISIN 1zh1A 121 :VTRV T0547 543 :KGYE 1zh1A 126 :DFHY Number of specific fragments extracted= 2 number of extra gaps= 1 total=78446 # 2et1A.538.76 read from T0547.t04.many.frag # found chain 2et1A in training set Warning: unaligning (T0547)K543 (2et1A)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 because of BadResidue code BAD_PEPTIDE in next template residue (2et1A)N85 Warning: unaligning (T0547)E546 because of BadResidue code BAD_PEPTIDE at template residue (2et1A)N85 T0547 538 :ISINE 2et1A 77 :VDFAP T0547 544 :G 2et1A 83 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=78448 # 2erfA.538.105 read from T0547.t04.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)K543 (2erfA)Q117 because L (left) conformation "forbidden" or filtered. T0547 538 :ISINE 2erfA 112 :LSLTV T0547 544 :GYE 2erfA 118 :GKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=78450 # 1q9uA.538.84 read from T0547.t04.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)S539 (1q9uA)Y83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1q9uA)N86 because L (left) conformation "forbidden" or filtered. T0547 538 :I 1q9uA 82 :V T0547 540 :IN 1q9uA 84 :QE T0547 543 :KGYE 1q9uA 87 :GTTK Number of specific fragments extracted= 3 number of extra gaps= 2 total=78453 # 1of5A.538.183 read from T0547.t04.many.frag # found chain 1of5A in template set Warning: unaligning (T0547)K543 (1of5A)N456 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1of5A)V458 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :ISINE 1of5A 451 :IVPMN T0547 544 :G 1of5A 457 :S T0547 546 :E 1of5A 459 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=78456 # 1wckA.538.190 read from T0547.t04.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)E542 (1wckA)G195 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1wckA)S199 because E (beta_S) conformation "forbidden" or filtered. T0547 538 :ISIN 1wckA 191 :VIVT T0547 543 :KGY 1wckA 196 :LGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=78458 # 2f86B.538.115 read from T0547.t04.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)K543 (2f86B)G460 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2f86B)R461 because P (beta_P) conformation "forbidden" or filtered. T0547 538 :ISINE 2f86B 455 :WSKKQ T0547 545 :YE 2f86B 462 :WV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78460 # 2d1eA.538.105 read from T0547.t04.many.frag # found chain 2d1eA in training set T0547 538 :ISINEKGYE 2d1eA 106 :IVAGPGGVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=78461 # 1dy5A.538.107 read from T0547.t04.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)S539 (1dy5A)A109 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1dy5A)E111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1dy5A)G112 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 538 :I 1dy5A 108 :V T0547 540 :I 1dy5A 110 :C T0547 543 :K 1dy5A 113 :N T0547 545 :YE 1dy5A 115 :YV Number of specific fragments extracted= 4 number of extra gaps= 3 total=78465 # 1wruA.538.318 read from T0547.t04.many.frag # found chain 1wruA in template set Warning: unaligning (T0547)K543 (1wruA)Q324 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1wruA)D325 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1wruA)G326 because S (epsilon) conformation "forbidden" or filtered. T0547 538 :ISINE 1wruA 319 :LILND T0547 546 :E 1wruA 327 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=78467 # 2f2hA.538.715 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)E542 (2f2hA)G720 because S (epsilon) conformation "forbidden" or filtered. T0547 538 :ISIN 2f2hA 716 :AART T0547 543 :KGYE 2f2hA 721 :NTIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=78469 # 1q9jA.538.380 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)S539 (1q9jA)A382 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1q9jA)A385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1q9jA)I389 because E (beta_S) conformation "forbidden" or filtered. T0547 538 :I 1q9jA 381 :C T0547 540 :IN 1q9jA 383 :VY T0547 543 :KGY 1q9jA 386 :GQL Number of specific fragments extracted= 3 number of extra gaps= 3 total=78472 # 1w0pA.538.444 read from T0547.t04.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)S539 (1w0pA)Q446 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1w0pA)H452 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1w0pA)T453 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :I 1w0pA 445 :L T0547 540 :INEKG 1w0pA 447 :YSALN Number of specific fragments extracted= 2 number of extra gaps= 2 total=78474 # 1w0hA.538.38 read from T0547.t04.many.frag # found chain 1w0hA in training set Warning: unaligning (T0547)N541 (1w0hA)N160 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1w0hA)L164 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1w0hA)E165 because E (beta_S) conformation "forbidden" or filtered. T0547 538 :ISI 1w0hA 157 :VLL T0547 542 :EKG 1w0hA 161 :THT Number of specific fragments extracted= 2 number of extra gaps= 2 total=78476 # 1mixA.538.143 read from T0547.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)Y545 (1mixA)K345 because T (delta_L) conformation "forbidden" or filtered. T0547 538 :ISINEKG 1mixA 338 :MRVDEKT T0547 546 :E 1mixA 346 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=78478 # 2furA.538.36 read from T0547.t04.many.frag # found chain 2furA in training set Warning: unaligning (T0547)I540 (2furA)F38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (2furA)I39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (2furA)P44 because P (beta_P) conformation "forbidden" or filtered. T0547 538 :IS 2furA 36 :VS T0547 542 :EKGY 2furA 40 :DGGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=78480 # 1sacA.538.95 read from T0547.t04.many.frag # found chain 1sacA in template set Warning: unaligning (T0547)E546 (1sacA)I104 because P (beta_P) conformation "forbidden" or filtered. T0547 538 :ISINEKGY 1sacA 96 :VSWESSSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=78481 # 2ew0A.538.29 read from T0547.t04.many.frag # found chain 2ew0A in training set T0547 538 :ISINEKGYE 2ew0A 30 :ARHDEEGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=78482 # 1ws8A.538.37 read from T0547.t04.many.frag # found chain 1ws8A in training set Warning: unaligning (T0547)G544 (1ws8A)F44 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1ws8A)H45 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1ws8A)N46 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :ISINEK 1ws8A 38 :FNYNNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=78483 # 1xipA.539.251 read from T0547.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)K543 (1xipA)G255 because L (left) conformation "forbidden" or filtered. T0547 539 :SINE 1xipA 251 :KHID T0547 544 :GYEV 1xipA 256 :SASF Number of specific fragments extracted= 2 number of extra gaps= 1 total=78485 # 1fiqB.539.221 read from T0547.t04.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1fiqB)S446 because Y (epsilon') conformation "forbidden" or filtered. T0547 539 :SINE 1fiqB 441 :LFQP T0547 545 :YEV 1fiqB 447 :MQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78487 # 1ckmA.539.282 read from T0547.t04.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)E542 (1ckmA)D286 because L (left) conformation "forbidden" or filtered. T0547 539 :SIN 1ckmA 283 :GFA T0547 543 :KGYEV 1ckmA 287 :GTWKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=78489 # 1hf2A.539.189 read from T0547.t04.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)S539 (1hf2A)H190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1hf2A)G193 because S (epsilon) conformation "forbidden" or filtered. T0547 540 :IN 1hf2A 191 :VK T0547 543 :KGYEV 1hf2A 194 :NRIVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=78491 # 1ry9A.539.57 read from T0547.t04.many.frag # found chain 1ry9A in template set Warning: unaligning (T0547)K543 (1ry9A)E50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1ry9A)Q51 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SINE 1ry9A 46 :ALVN T0547 545 :YEV 1ry9A 52 :VML Number of specific fragments extracted= 2 number of extra gaps= 1 total=78493 # 1of5A.539.184 read from T0547.t04.many.frag # found chain 1of5A in template set Warning: unaligning (T0547)N541 (1of5A)M454 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1of5A)N455 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1of5A)N456 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1of5A)S457 because Y (epsilon') conformation "forbidden" or filtered. T0547 539 :SI 1of5A 452 :VP T0547 545 :YEV 1of5A 458 :VII Number of specific fragments extracted= 2 number of extra gaps= 1 total=78495 # 1zh1A.539.86 read from T0547.t04.many.frag # found chain 1zh1A in template set T0547 539 :SINEKGYEV 1zh1A 122 :TRVGDFHYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78496 # 1m4jA.539.30 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)G544 (1m4jA)Q36 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SINEK 1m4jA 31 :SIENE T0547 545 :YEV 1m4jA 37 :LVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78498 # 2f86B.539.116 read from T0547.t04.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)E542 (2f86B)Q459 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2f86B)R461 because P (beta_P) conformation "forbidden" or filtered. T0547 539 :SIN 2f86B 456 :SKK T0547 543 :K 2f86B 460 :G T0547 545 :YEV 2f86B 462 :WVC Number of specific fragments extracted= 3 number of extra gaps= 2 total=78501 # 1u8xX.539.385 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)K543 (1u8xX)N367 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1u8xX)G368 because S (epsilon) conformation "forbidden" or filtered. T0547 539 :SINE 1u8xX 363 :IVGS T0547 545 :YEV 1u8xX 369 :PEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=78503 # 1mixA.539.144 read from T0547.t04.many.frag # found chain 1mixA in training set T0547 539 :SINEKGYEV 1mixA 339 :RVDEKTKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78504 # 2f2hA.539.716 read from T0547.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)E542 (2f2hA)G720 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2f2hA)T722 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SIN 2f2hA 717 :ART T0547 543 :K 2f2hA 721 :N T0547 545 :YEV 2f2hA 723 :ITV Number of specific fragments extracted= 3 number of extra gaps= 2 total=78507 # 2cwsA.539.127 read from T0547.t04.many.frag # found chain 2cwsA in training set T0547 539 :SINEKGYEV 2cwsA 207 :VFQDGQLDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=78508 # 1u9iA.539.470 read from T0547.t04.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)N541 (1u9iA)S473 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1u9iA)D478 because D (zeta) conformation "forbidden" or filtered. T0547 539 :SI 1u9iA 471 :MI T0547 542 :EKGY 1u9iA 474 :DKGP T0547 547 :V 1u9iA 479 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=78511 # 1x31D.539.69 read from T0547.t04.many.frag # found chain 1x31D in template set T0547 539 :SINEKGYEV 1x31D 70 :LRDTVSYEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=78512 # 1wjxA.539.45 read from T0547.t04.many.frag # found chain 1wjxA in training set Warning: unaligning (T0547)E542 (1wjxA)D49 because L (left) conformation "forbidden" or filtered. T0547 539 :SIN 1wjxA 46 :RFE T0547 543 :KGYEV 1wjxA 50 :GELYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=78514 # 1q9uA.539.85 read from T0547.t04.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)S539 (1q9uA)Y83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1q9uA)N86 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1q9uA)G87 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1q9uA)T88 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :IN 1q9uA 84 :QE T0547 545 :YEV 1q9uA 89 :TKI Number of specific fragments extracted= 2 number of extra gaps= 2 total=78516 # 1xyiA.539.32 read from T0547.t04.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)E542 (1xyiA)D36 because D (zeta) conformation "forbidden" or filtered. T0547 539 :SIN 1xyiA 33 :TYD T0547 543 :KGYEV 1xyiA 37 :NGKTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=78518 # 1q9jA.539.381 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)S539 (1q9jA)A382 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :INEKGYEV 1q9jA 383 :VYAGQLII Number of specific fragments extracted= 1 number of extra gaps= 1 total=78519 # 1dy5A.539.108 read from T0547.t04.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N541 (1dy5A)E111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 539 :SI 1dy5A 109 :AC T0547 542 :EK 1dy5A 112 :GN T0547 545 :YEV 1dy5A 115 :YVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=78522 # 1jyoA.539.39 read from T0547.t04.many.frag # found chain 1jyoA in template set Warning: unaligning (T0547)E542 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jyoA)D44 Warning: unaligning (T0547)K543 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jyoA)D44 T0547 539 :SIN 1jyoA 40 :EAK T0547 544 :GYEV 1jyoA 45 :IWLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=78524 # 2ewcA.539.18 read from T0547.t04.many.frag # found chain 2ewcA in template set Warning: unaligning (T0547)E546 (2ewcA)Y26 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SINEKGY 2ewcA 19 :VEAGDFY T0547 547 :V 2ewcA 27 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=78526 # 2bvlA.539.375 read from T0547.t04.many.frag # found chain 2bvlA in template set T0547 539 :SINEKGYEV 2bvlA 376 :AFNSKGIIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=78527 # 2basA.539.350 read from T0547.t04.many.frag # found chain 2basA in template set Warning: unaligning (T0547)E542 (2basA)D330 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (2basA)G331 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2basA)E332 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SIN 2basA 327 :FKQ T0547 545 :YEV 2basA 333 :WIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=78529 # 2et1A.539.77 read from T0547.t04.many.frag # found chain 2et1A in training set Warning: unaligning (T0547)E542 (2et1A)P81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (2et1A)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 because of BadResidue code BAD_PEPTIDE in next template residue (2et1A)N85 Warning: unaligning (T0547)E546 because of BadResidue code BAD_PEPTIDE at template residue (2et1A)N85 T0547 539 :SIN 2et1A 78 :DFA T0547 544 :G 2et1A 83 :G T0547 547 :V 2et1A 86 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=78532 # 2ew0A.539.30 read from T0547.t04.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)K543 (2ew0A)E35 because G (3-10) conformation "forbidden" or filtered. T0547 539 :SINE 2ew0A 31 :RHDE T0547 544 :GYEV 2ew0A 36 :GAQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=78534 # 1c1yB.539.6 read from T0547.t04.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)N541 (1c1yB)P63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1c1yB)N64 because L (left) conformation "forbidden" or filtered. T0547 539 :SI 1c1yB 61 :FL T0547 543 :KGYEV 1c1yB 65 :KQRTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78536 # 1hp1A.539.275 read from T0547.t04.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)E542 (1hp1A)N304 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1hp1A)G305 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1hp1A)E306 because P (beta_P) conformation "forbidden" or filtered. T0547 539 :SIN 1hp1A 301 :EFR T0547 545 :YEV 1hp1A 307 :MKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=78538 # 2nlrA.539.32 read from T0547.t04.many.frag # found chain 2nlrA in training set T0547 539 :SINEKGYEV 2nlrA 33 :TATDTGFRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78539 # 2f9hA.539.61 read from T0547.t04.many.frag # found chain 2f9hA in training set Warning: unaligning (T0547)N541 (2f9hA)G61 because S (epsilon) conformation "forbidden" or filtered. T0547 539 :SI 2f9hA 59 :KI T0547 542 :EKGYEV 2f9hA 62 :DTNYTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=78541 # 1zh1A.540.87 read from T0547.t04.many.frag # found chain 1zh1A in template set T0547 540 :INEKGYEVE 1zh1A 123 :RVGDFHYVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=78542 # 1xipA.540.252 read from T0547.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)E542 (1xipA)D254 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xipA)G255 because L (left) conformation "forbidden" or filtered. T0547 540 :IN 1xipA 252 :HI T0547 544 :GYEVE 1xipA 256 :SASFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=78544 # 1m4jA.540.31 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)K543 (1m4jA)E35 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1m4jA)Q36 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1m4jA)V38 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :INE 1m4jA 32 :IEN T0547 545 :Y 1m4jA 37 :L T0547 547 :VE 1m4jA 39 :VG Number of specific fragments extracted= 3 number of extra gaps= 2 total=78547 # 1fiqB.540.222 read from T0547.t04.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1fiqB)S446 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :INE 1fiqB 442 :FQP T0547 545 :YEVE 1fiqB 447 :MQVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=78549 # 1hf2A.540.190 read from T0547.t04.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)E542 (1hf2A)G193 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1hf2A)R195 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :IN 1hf2A 191 :VK T0547 543 :K 1hf2A 194 :N T0547 545 :YEVE 1hf2A 196 :IVIE Number of specific fragments extracted= 3 number of extra gaps= 2 total=78552 # 1mixA.540.145 read from T0547.t04.many.frag # found chain 1mixA in training set T0547 540 :INEKGYEVE 1mixA 340 :VDEKTKEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=78553 # 1of5A.540.185 read from T0547.t04.many.frag # found chain 1of5A in template set Warning: unaligning (T0547)N541 (1of5A)M454 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1of5A)N455 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1of5A)N456 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1of5A)V458 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :I 1of5A 453 :P T0547 544 :G 1of5A 457 :S T0547 546 :EVE 1of5A 459 :IIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=78556 # 1s3sG.540.58 read from T0547.t04.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)N541 (1s3sG)A303 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1s3sG)G305 because T (delta_L) conformation "forbidden" or filtered. T0547 540 :I 1s3sG 302 :L T0547 542 :E 1s3sG 304 :D T0547 544 :GYEVE 1s3sG 306 :GRLVQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=78559 # 1ckmA.540.283 read from T0547.t04.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)E542 (1ckmA)D286 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1ckmA)G287 because T (delta_L) conformation "forbidden" or filtered. T0547 540 :IN 1ckmA 284 :FA T0547 544 :GYEVE 1ckmA 288 :TWKYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=78561 # 2f86B.540.117 read from T0547.t04.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)E542 (2f86B)Q459 because L (left) conformation "forbidden" or filtered. T0547 540 :IN 2f86B 457 :KK T0547 543 :KGYEVE 2f86B 460 :GRWVCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78563 # 1u9iA.540.471 read from T0547.t04.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)N541 (1u9iA)S473 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :I 1u9iA 472 :I T0547 542 :EKGYEVE 1u9iA 474 :DKGPDIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=78565 # 1q9jA.540.382 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)E542 (1q9jA)A385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1q9jA)E391 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :IN 1q9jA 383 :VY T0547 543 :KGYEV 1q9jA 386 :GQLII Number of specific fragments extracted= 2 number of extra gaps= 2 total=78567 # 2ewcA.540.19 read from T0547.t04.many.frag # found chain 2ewcA in template set Warning: unaligning (T0547)E542 (2ewcA)G22 because S (epsilon) conformation "forbidden" or filtered. T0547 540 :IN 2ewcA 20 :EA T0547 543 :KGYEVE 2ewcA 23 :DFYYLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=78569 # 1ry9A.540.58 read from T0547.t04.many.frag # found chain 1ry9A in template set Warning: unaligning (T0547)K543 (1ry9A)E50 because L (left) conformation "forbidden" or filtered. T0547 540 :INE 1ry9A 47 :LVN T0547 544 :GYEVE 1ry9A 51 :QVMLW Number of specific fragments extracted= 2 number of extra gaps= 1 total=78571 # 1wjxA.540.46 read from T0547.t04.many.frag # found chain 1wjxA in training set Warning: unaligning (T0547)E542 (1wjxA)D49 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1wjxA)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 540 :IN 1wjxA 47 :FE T0547 544 :GYEVE 1wjxA 51 :ELYLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=78573 # 2bvlA.540.376 read from T0547.t04.many.frag # found chain 2bvlA in template set Warning: unaligning (T0547)N541 (2bvlA)N378 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :I 2bvlA 377 :F T0547 542 :EKGYEVE 2bvlA 379 :SKGIINQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=78575 # 1x31D.540.70 read from T0547.t04.many.frag # found chain 1x31D in template set T0547 540 :INEKGYEVE 1x31D 71 :RDTVSYEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=78576 # 1bcpB.540.112 read from T0547.t04.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)N541 (1bcpB)S114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1bcpB)N116 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1bcpB)S117 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :I 1bcpB 113 :S T0547 542 :E 1bcpB 115 :T T0547 545 :YEVE 1bcpB 118 :RLCA Number of specific fragments extracted= 3 number of extra gaps= 2 total=78579 # 2f9hA.540.62 read from T0547.t04.many.frag # found chain 2f9hA in training set Warning: unaligning (T0547)G544 (2f9hA)N64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (2f9hA)T66 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :INEK 2f9hA 60 :IGDT T0547 545 :Y 2f9hA 65 :Y T0547 547 :VE 2f9hA 67 :IT Number of specific fragments extracted= 3 number of extra gaps= 2 total=78582 # 2nlrA.540.33 read from T0547.t04.many.frag # found chain 2nlrA in training set T0547 540 :INEKGYEVE 2nlrA 34 :ATDTGFRVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=78583 # 1vs0A.540.218 read from T0547.t04.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)N541 (1vs0A)G669 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1vs0A)G671 because T (delta_L) conformation "forbidden" or filtered. T0547 540 :I 1vs0A 668 :P T0547 542 :E 1vs0A 670 :P T0547 544 :GYEVE 1vs0A 672 :GLQFA Number of specific fragments extracted= 3 number of extra gaps= 2 total=78586 # 1dy5A.540.109 read from T0547.t04.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N541 (1dy5A)E111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1dy5A)V116 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :I 1dy5A 110 :C T0547 542 :EK 1dy5A 112 :GN T0547 545 :Y 1dy5A 115 :Y T0547 547 :VE 1dy5A 117 :PV Number of specific fragments extracted= 4 number of extra gaps= 3 total=78590 # 1k8kC.540.36 read from T0547.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)E542 (1k8kC)G39 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1k8kC)N40 because G (3-10) conformation "forbidden" or filtered. T0547 540 :IN 1k8kC 37 :KS T0547 544 :GYEVE 1k8kC 41 :KWVQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78592 # 2et1A.540.78 read from T0547.t04.many.frag # found chain 2et1A in training set Warning: unaligning (T0547)Y545 because of BadResidue code BAD_PEPTIDE in next template residue (2et1A)N85 Warning: unaligning (T0547)E546 because of BadResidue code BAD_PEPTIDE at template residue (2et1A)N85 T0547 540 :INEKG 2et1A 79 :FAPGG T0547 547 :VE 2et1A 86 :PP Number of specific fragments extracted= 2 number of extra gaps= 1 total=78594 # 1u8xX.540.386 read from T0547.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)N541 (1u8xX)G365 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :I 1u8xX 364 :V T0547 542 :EKGYEVE 1u8xX 366 :SNGPEPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=78596 # 1c1yB.540.7 read from T0547.t04.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)N541 (1c1yB)P63 because P (beta_P) conformation "forbidden" or filtered. T0547 540 :I 1c1yB 62 :L T0547 542 :EKGYEVE 1c1yB 64 :NKQRTVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78598 # 1xyiA.540.33 read from T0547.t04.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)I540 (1xyiA)Y34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. T0547 541 :NE 1xyiA 35 :DD T0547 544 :GYEVE 1xyiA 38 :GKTGR Number of specific fragments extracted= 2 number of extra gaps= 2 total=78600 # 2f8aA.540.178 read from T0547.t04.many.frag # found chain 2f8aA in training set T0547 540 :INEKGYEVE 2f8aA 167 :VGPDGVPLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=78601 # 2f2hA.540.717 read from T0547.t04.many.frag # found chain 2f2hA in template set T0547 540 :INEKGYEVE 2f2hA 718 :RTGNTITVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=78602 1rypL expands to /projects/compbio/data/pdb/1ryp.pdb.gz 1rypL:# 1rypL.540.179 read from T0547.t04.many.frag # adding 1rypL to template set # found chain 1rypL in template set Warning: unaligning (T0547)G544 (1rypL)G184 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1rypL)I186 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :INEK 1rypL 180 :VTED T0547 545 :Y 1rypL 185 :W T0547 547 :VE 1rypL 187 :YH Number of specific fragments extracted= 3 number of extra gaps= 2 total=78605 # 1s3sG.541.59 read from T0547.t04.many.frag # found chain 1s3sG in template set T0547 541 :NEKGYEVEG 1s3sG 303 :ADGGRLVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=78606 # 1m4jA.541.32 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)G544 (1m4jA)Q36 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NEK 1m4jA 33 :ENE T0547 545 :YEVEG 1m4jA 37 :LVVGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=78608 # 1x31D.541.71 read from T0547.t04.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G549 (1x31D)A80 because Y (epsilon') conformation "forbidden" or filtered. T0547 541 :NEKGYEVE 1x31D 72 :DTVSYEFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=78609 # 1g1kA.541.42 read from T0547.t04.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)G549 (1g1kA)S52 because Y (epsilon') conformation "forbidden" or filtered. T0547 541 :NEKGYEVE 1g1kA 44 :DASLLEVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=78610 # 1fiqB.541.223 read from T0547.t04.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1fiqB)S446 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1fiqB)E451 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NE 1fiqB 443 :QP T0547 545 :YEVE 1fiqB 447 :MQVK Number of specific fragments extracted= 2 number of extra gaps= 2 total=78612 # 1u9iA.541.472 read from T0547.t04.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)N541 (1u9iA)S473 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1u9iA)K480 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1u9iA)D481 because P (beta_P) conformation "forbidden" or filtered. T0547 542 :EKGYEV 1u9iA 474 :DKGPDI Number of specific fragments extracted= 1 number of extra gaps= 2 total=78613 # 1zh1A.541.88 read from T0547.t04.many.frag # found chain 1zh1A in template set T0547 541 :NEKGYEVEG 1zh1A 124 :VGDFHYVTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=78614 # 1dy5A.541.110 read from T0547.t04.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N541 (1dy5A)E111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1dy5A)G112 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 543 :K 1dy5A 113 :N T0547 545 :YEVEG 1dy5A 115 :YVPVH Number of specific fragments extracted= 2 number of extra gaps= 2 total=78616 # 2nlrA.541.34 read from T0547.t04.many.frag # found chain 2nlrA in training set T0547 541 :NEKGYEVEG 2nlrA 35 :TDTGFRVTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=78617 # 1mixA.541.146 read from T0547.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)E546 (1mixA)E346 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1mixA)Q349 because Y (epsilon') conformation "forbidden" or filtered. T0547 541 :NEKGY 1mixA 341 :DEKTK T0547 547 :VE 1mixA 347 :VI Number of specific fragments extracted= 2 number of extra gaps= 2 total=78619 # 1xyiA.541.34 read from T0547.t04.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. T0547 541 :NE 1xyiA 35 :DD T0547 544 :GYEVEG 1xyiA 38 :GKTGRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=78621 # 1xipA.541.253 read from T0547.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)E542 (1xipA)D254 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xipA)G255 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 because of BadResidue code BAD_PEPTIDE in next template residue (1xipA)T262 T0547 541 :N 1xipA 253 :I T0547 544 :GYEVE 1xipA 256 :SASFQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=78623 # 1gutA.541.28 read from T0547.t04.many.frag # found chain 1gutA in training set Warning: unaligning (T0547)K543 (1gutA)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1gutA)K34 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NE 1gutA 29 :IA T0547 544 :GY 1gutA 32 :GN T0547 547 :VEG 1gutA 35 :ITS Number of specific fragments extracted= 3 number of extra gaps= 2 total=78626 1mqkH expands to /projects/compbio/data/pdb/1mqk.pdb.gz 1mqkH:Skipped atom 870, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 872, because occupancy 0.000 <= existing 0.000 in 1mqkH Skipped atom 874, because occupancy 0.000 <= existing 0.000 in 1mqkH Skipped atom 876, because occupancy 0.000 <= existing 0.000 in 1mqkH Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 892, because occupancy 0.000 <= existing 0.000 in 1mqkH Skipped atom 894, because occupancy 0.000 <= existing 0.000 in 1mqkH Skipped atom 896, because occupancy 0.000 <= existing 0.000 in 1mqkH Skipped atom 911, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 913, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 915, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 917, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 963, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 965, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 996, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 1028, because occupancy 0.300 <= existing 0.700 in 1mqkH Skipped atom 1149, because occupancy 0.280 <= existing 0.730 in 1mqkH Skipped atom 1151, because occupancy 0.280 <= existing 0.730 in 1mqkH Skipped atom 1286, because occupancy 0.280 <= existing 0.720 in 1mqkH Skipped atom 1288, because occupancy 0.280 <= existing 0.720 in 1mqkH Skipped atom 1290, because occupancy 0.280 <= existing 0.720 in 1mqkH Skipped atom 1537, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 1567, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 1603, because occupancy 0.340 <= existing 0.660 in 1mqkH Skipped atom 1605, because occupancy 0.340 <= existing 0.660 in 1mqkH Skipped atom 1607, because occupancy 0.340 <= existing 0.660 in 1mqkH Skipped atom 1638, because occupancy 0.420 <= existing 0.580 in 1mqkH Skipped atom 1723, because occupancy 0.460 <= existing 0.550 in 1mqkH Skipped atom 1725, because occupancy 0.460 <= existing 0.550 in 1mqkH Skipped atom 1727, because occupancy 0.460 <= existing 0.550 in 1mqkH Skipped atom 1772, because occupancy 0.500 <= existing 0.500 in 1mqkH # 1mqkH.541.98 read from T0547.t04.many.frag # adding 1mqkH to template set # found chain 1mqkH in template set Warning: unaligning (T0547)G544 (1mqkH)Y102 because S (epsilon) conformation "forbidden" or filtered. T0547 541 :NEK 1mqkH 99 :HEY T0547 545 :YEVEG 1mqkH 103 :YAMDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=78628 # 2f9hA.541.63 read from T0547.t04.many.frag # found chain 2f9hA in training set Warning: unaligning (T0547)G544 (2f9hA)N64 because P (beta_P) conformation "forbidden" or filtered. T0547 541 :NEK 2f9hA 61 :GDT T0547 545 :YEVEG 2f9hA 65 :YTITK Number of specific fragments extracted= 2 number of extra gaps= 1 total=78630 # 1q9jA.541.383 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)E542 (1q9jA)A385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1q9jA)Q387 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :N 1q9jA 384 :Y T0547 543 :K 1q9jA 386 :G T0547 545 :YEVEG 1q9jA 388 :LIIEH Number of specific fragments extracted= 3 number of extra gaps= 2 total=78633 # 2f8aA.541.179 read from T0547.t04.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)K543 (2f8aA)D170 because G (3-10) conformation "forbidden" or filtered. T0547 541 :NE 2f8aA 168 :GP T0547 544 :GYEVEG 2f8aA 171 :GVPLRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=78635 # 2f86B.541.118 read from T0547.t04.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)G544 (2f86B)R461 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (2f86B)V463 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NEK 2f86B 458 :KQG T0547 545 :Y 2f86B 462 :W T0547 547 :VEG 2f86B 464 :CVH Number of specific fragments extracted= 3 number of extra gaps= 2 total=78638 # 1hf2A.541.191 read from T0547.t04.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)E542 (1hf2A)G193 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1hf2A)R195 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1hf2A)E199 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :N 1hf2A 192 :K T0547 543 :K 1hf2A 194 :N T0547 545 :YEV 1hf2A 196 :IVI T0547 549 :G 1hf2A 200 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=78642 # 1bcpB.541.113 read from T0547.t04.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)N541 (1bcpB)S114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1bcpB)N116 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1bcpB)V122 because E (beta_S) conformation "forbidden" or filtered. T0547 542 :E 1bcpB 115 :T T0547 544 :GYEVE 1bcpB 117 :SRLCA Number of specific fragments extracted= 2 number of extra gaps= 3 total=78644 # 1ckmA.541.284 read from T0547.t04.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)N541 (1ckmA)A285 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1ckmA)D286 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1ckmA)G287 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1ckmA)T288 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVEG 1ckmA 289 :WKYIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=78645 # 1of5A.541.186 read from T0547.t04.many.frag # found chain 1of5A in template set Warning: unaligning (T0547)N541 (1of5A)M454 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1of5A)N455 because L (left) conformation "forbidden" or filtered. T0547 543 :KGYEVEG 1of5A 456 :NSVIIAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=78646 # 1p90A.541.35 read from T0547.t04.many.frag # found chain 1p90A in training set Warning: unaligning (T0547)G544 (1p90A)D137 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1p90A)D142 because Y (epsilon') conformation "forbidden" or filtered. T0547 541 :NEK 1p90A 134 :SAK T0547 545 :YEVE 1p90A 138 :ASLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=78648 # 1ytaA.541.31 read from T0547.t04.many.frag # found chain 1ytaA in template set Warning: unaligning (T0547)E542 (1ytaA)D33 because P (beta_P) conformation "forbidden" or filtered. T0547 541 :N 1ytaA 32 :T T0547 543 :KGYEVEG 1ytaA 34 :ANLNILA Number of specific fragments extracted= 2 number of extra gaps= 1 total=78650 # 1k8kC.541.37 read from T0547.t04.many.frag # found chain 1k8kC in template set T0547 541 :NEKGYEVEG 1k8kC 38 :SGNKWVQVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=78651 # 1vs0A.541.219 read from T0547.t04.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)N541 (1vs0A)G669 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :EKGYEVEG 1vs0A 670 :PGGLQFAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=78652 # 2ewcA.541.20 read from T0547.t04.many.frag # found chain 2ewcA in template set Warning: unaligning (T0547)E542 (2ewcA)G22 because S (epsilon) conformation "forbidden" or filtered. T0547 541 :N 2ewcA 21 :A T0547 543 :KGYEVEG 2ewcA 23 :DFYYLNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=78654 # 2a74A.541.310 read from T0547.t04.many.frag # found chain 2a74A in template set Warning: unaligning (T0547)K543 (2a74A)G313 because T (delta_L) conformation "forbidden" or filtered. T0547 541 :NE 2a74A 311 :HS T0547 544 :GYEVEG 2a74A 314 :SDMVQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=78656 # 1xksA.541.235 read from T0547.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)N541 (1xksA)D300 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1xksA)Y308 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :EKGYEVE 1xksA 301 :DSSEKHA Number of specific fragments extracted= 1 number of extra gaps= 2 total=78657 # 1zeqX.541.70 read from T0547.t04.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)E542 (1zeqX)G76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1zeqX)D83 because Y (epsilon') conformation "forbidden" or filtered. T0547 541 :N 1zeqX 75 :Q T0547 543 :KGYEVE 1zeqX 77 :NLSLLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=78659 # 1x31D.542.72 read from T0547.t04.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G544 (1x31D)S75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1x31D)Y76 because T (delta_L) conformation "forbidden" or filtered. T0547 542 :EK 1x31D 73 :TV T0547 546 :EVEGI 1x31D 77 :EFKAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78661 # 1m4jA.542.33 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)E542 (1m4jA)N34 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1m4jA)E35 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1m4jA)Q36 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVEGI 1m4jA 37 :LVVGSC Number of specific fragments extracted= 1 number of extra gaps= 1 total=78662 # 1g1kA.542.43 read from T0547.t04.many.frag # found chain 1g1kA in template set T0547 542 :EKGYEVEGI 1g1kA 45 :ASLLEVVSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78663 # 1s3sG.542.60 read from T0547.t04.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)K543 (1s3sG)G305 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1s3sG)L308 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1s3sG)Q310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1s3sG)K311 because S (epsilon) conformation "forbidden" or filtered. T0547 542 :E 1s3sG 304 :D T0547 544 :GY 1s3sG 306 :GR T0547 547 :V 1s3sG 309 :V T0547 550 :I 1s3sG 312 :F Number of specific fragments extracted= 4 number of extra gaps= 3 total=78667 # 1fiqB.542.224 read from T0547.t04.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1fiqB)M447 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1fiqB)E451 because E (beta_S) conformation "forbidden" or filtered. T0547 542 :E 1fiqB 444 :P T0547 544 :G 1fiqB 446 :S T0547 546 :EVE 1fiqB 448 :QVK T0547 550 :I 1fiqB 452 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=78671 # 1zh1A.542.89 read from T0547.t04.many.frag # found chain 1zh1A in template set T0547 542 :EKGYEVEGI 1zh1A 125 :GDFHYVTGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=78672 # 2nlrA.542.35 read from T0547.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)Y545 (2nlrA)F39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (2nlrA)Q43 because E (beta_S) conformation "forbidden" or filtered. T0547 542 :EKG 2nlrA 36 :DTG T0547 546 :EVE 2nlrA 40 :RVT T0547 550 :I 2nlrA 44 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=78675 # 1mixA.542.147 read from T0547.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)Y545 (1mixA)K345 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1mixA)Q349 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :EKG 1mixA 342 :EKT T0547 546 :EVE 1mixA 346 :EVI T0547 550 :I 1mixA 350 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=78678 # 1wvqA.542.128 read from T0547.t04.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)K543 (1wvqA)E130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1wvqA)R131 because D (zeta) conformation "forbidden" or filtered. T0547 542 :E 1wvqA 129 :P T0547 545 :YEVEGI 1wvqA 132 :RGVVGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78680 # 1ooyA.542.441 read from T0547.t04.many.frag # found chain 1ooyA in training set T0547 542 :EKGYEVEGI 1ooyA 442 :KKGLTLIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=78681 # 1u9iA.542.473 read from T0547.t04.many.frag # found chain 1u9iA in template set T0547 542 :EKGYEVEGI 1u9iA 474 :DKGPDIKDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=78682 # 1gutA.542.29 read from T0547.t04.many.frag # found chain 1gutA in training set Warning: unaligning (T0547)G549 (1gutA)S37 because E (beta_S) conformation "forbidden" or filtered. T0547 542 :EKGYEVE 1gutA 30 :AGGNKIT T0547 550 :I 1gutA 38 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=78684 # 2f9hA.542.64 read from T0547.t04.many.frag # found chain 2f9hA in training set Warning: unaligning (T0547)K543 (2f9hA)T63 because E (beta_S) conformation "forbidden" or filtered. T0547 542 :E 2f9hA 62 :D T0547 544 :GYEVEGI 2f9hA 64 :NYTITKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78686 # 1mqkH.542.99 read from T0547.t04.many.frag # found chain 1mqkH in template set Warning: unaligning (T0547)E542 (1mqkH)E100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1mqkH)Y101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1mqkH)Y103 because G (3-10) conformation "forbidden" or filtered. T0547 544 :G 1mqkH 102 :Y T0547 546 :EVEGI 1mqkH 104 :AMDYW Number of specific fragments extracted= 2 number of extra gaps= 2 total=78688 # 1bcpB.542.114 read from T0547.t04.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)K543 (1bcpB)N116 because L (left) conformation "forbidden" or filtered. T0547 542 :E 1bcpB 115 :T T0547 544 :GYEVEGI 1bcpB 117 :SRLCAVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=78690 # 1p90A.542.36 read from T0547.t04.many.frag # found chain 1p90A in training set T0547 542 :EKGYEVEGI 1p90A 135 :AKDASLVDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=78691 # 1vr9A.542.109 read from T0547.t04.many.frag # found chain 1vr9A in training set Warning: unaligning (T0547)G544 (1vr9A)E100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1vr9A)M101 because L (left) conformation "forbidden" or filtered. T0547 542 :EK 1vr9A 98 :DE T0547 546 :EVEGI 1vr9A 102 :RLKGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=78693 # 1dy5A.542.111 read from T0547.t04.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)E542 (1dy5A)G112 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 543 :K 1dy5A 113 :N T0547 545 :YEVEGI 1dy5A 115 :YVPVHF Number of specific fragments extracted= 2 number of extra gaps= 2 total=78695 # 2f8aA.542.180 read from T0547.t04.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)E546 (2f8aA)P173 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (2f8aA)R176 because E (beta_S) conformation "forbidden" or filtered. T0547 542 :EKGY 2f8aA 169 :PDGV T0547 547 :VE 2f8aA 174 :LR T0547 550 :I 2f8aA 177 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=78698 # 1k92A.542.365 read from T0547.t04.many.frag # found chain 1k92A in training set Warning: unaligning (T0547)E542 (1k92A)G366 because S (epsilon) conformation "forbidden" or filtered. T0547 543 :KGYEVEGI 1k92A 367 :NDYSILNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=78699 # 1x6oA.542.159 read from T0547.t04.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)E542 (1x6oA)M152 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1x6oA)T154 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :K 1x6oA 153 :G T0547 545 :YEVEGI 1x6oA 155 :EQVLQT Number of specific fragments extracted= 2 number of extra gaps= 2 total=78701 # 1zeqX.542.71 read from T0547.t04.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)K543 (1zeqX)N77 because L (left) conformation "forbidden" or filtered. T0547 542 :E 1zeqX 76 :G T0547 544 :GYEVEGI 1zeqX 78 :LSLLQDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=78703 # 2blnA.542.270 read from T0547.t04.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)K543 (2blnA)G272 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (2blnA)E275 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I550 (2blnA)G279 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :E 2blnA 271 :D T0547 544 :GY 2blnA 273 :AL T0547 547 :VEG 2blnA 276 :IVT Number of specific fragments extracted= 3 number of extra gaps= 3 total=78706 # 1xksA.542.236 read from T0547.t04.many.frag # found chain 1xksA in template set T0547 542 :EKGYEVEGI 1xksA 301 :DSSEKHAYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=78707 # 1uoyA.542.39 read from T0547.t04.many.frag # found chain 1uoyA in training set Warning: unaligning (T0547)E542 (1uoyA)G40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1uoyA)K42 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1uoyA)T44 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :K 1uoyA 41 :G T0547 545 :Y 1uoyA 43 :W T0547 547 :VEGI 1uoyA 45 :EVQD Number of specific fragments extracted= 3 number of extra gaps= 3 total=78710 # 1q9jA.542.384 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)E542 (1q9jA)A385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1q9jA)G386 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1q9jA)H392 because E (beta_S) conformation "forbidden" or filtered. T0547 544 :GYEVE 1q9jA 387 :QLIIE T0547 550 :I 1q9jA 393 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=78712 # 1ntvA.542.110 read from T0547.t04.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)G544 (1ntvA)N135 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1ntvA)A140 because E (beta_S) conformation "forbidden" or filtered. T0547 542 :EK 1ntvA 133 :EG T0547 545 :YEVE 1ntvA 136 :HRFV T0547 550 :I 1ntvA 141 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=78715 # 2ewcA.542.21 read from T0547.t04.many.frag # found chain 2ewcA in template set Warning: unaligning (T0547)G549 (2ewcA)Y29 because P (beta_P) conformation "forbidden" or filtered. T0547 542 :EKGYEVE 2ewcA 22 :GDFYYLN T0547 550 :I 2ewcA 30 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=78717 # 1xipA.542.254 read from T0547.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)K543 (1xipA)G255 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 because of BadResidue code BAD_PEPTIDE in next template residue (1xipA)T262 Warning: unaligning (T0547)I550 because of BadResidue code BAD_PEPTIDE at template residue (1xipA)T262 T0547 542 :E 1xipA 254 :D T0547 544 :GYEVE 1xipA 256 :SASFQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=78719 # 1xyiA.542.35 read from T0547.t04.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1xyiA)T40 because P (beta_P) conformation "forbidden" or filtered. T0547 542 :E 1xyiA 36 :D T0547 544 :GY 1xyiA 38 :GK T0547 547 :VEGI 1xyiA 41 :GRGA Number of specific fragments extracted= 3 number of extra gaps= 2 total=78722 # 1x31D.543.73 read from T0547.t04.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G544 (1x31D)S75 because G (3-10) conformation "forbidden" or filtered. T0547 543 :K 1x31D 74 :V T0547 545 :YEVEGII 1x31D 76 :YEFKAVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=78724 # 1g1kA.543.44 read from T0547.t04.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)E546 (1g1kA)E49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1g1kA)S52 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :KGY 1g1kA 46 :SLL T0547 547 :VE 1g1kA 50 :VV T0547 550 :II 1g1kA 53 :VD Number of specific fragments extracted= 3 number of extra gaps= 2 total=78727 # 1m4jA.543.34 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)K543 (1m4jA)E35 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1m4jA)Q36 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVEGII 1m4jA 37 :LVVGSCS Number of specific fragments extracted= 1 number of extra gaps= 1 total=78728 # 1s3sG.543.61 read from T0547.t04.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)K543 (1s3sG)G305 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1s3sG)K311 because S (epsilon) conformation "forbidden" or filtered. T0547 544 :GYEVE 1s3sG 306 :GRLVQ T0547 550 :II 1s3sG 312 :FN Number of specific fragments extracted= 2 number of extra gaps= 2 total=78730 # 1zh1A.543.90 read from T0547.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)G549 (1zh1A)G132 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :KGYEVE 1zh1A 126 :DFHYVT T0547 550 :II 1zh1A 133 :MT Number of specific fragments extracted= 2 number of extra gaps= 1 total=78732 # 1fiqB.543.225 read from T0547.t04.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1fiqB)Q448 because P (beta_P) conformation "forbidden" or filtered. T0547 544 :GY 1fiqB 446 :SM T0547 547 :VEGII 1fiqB 449 :VKELA Number of specific fragments extracted= 2 number of extra gaps= 2 total=78734 # 1wvqA.543.129 read from T0547.t04.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)G544 (1wvqA)R131 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1wvqA)G133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1wvqA)G136 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :K 1wvqA 130 :E T0547 545 :Y 1wvqA 132 :R T0547 547 :VE 1wvqA 134 :VV T0547 550 :II 1wvqA 137 :VV Number of specific fragments extracted= 4 number of extra gaps= 3 total=78738 # 1ooyA.543.442 read from T0547.t04.many.frag # found chain 1ooyA in training set T0547 543 :KGYEVEGII 1ooyA 443 :KGLTLIELW Number of specific fragments extracted= 1 number of extra gaps= 0 total=78739 # 2nlrA.543.36 read from T0547.t04.many.frag # found chain 2nlrA in training set T0547 543 :KGYEVEGII 2nlrA 37 :TGFRVTQAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=78740 # 1k92A.543.366 read from T0547.t04.many.frag # found chain 1k92A in training set Warning: unaligning (T0547)G544 (1k92A)D368 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1k92A)N373 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :K 1k92A 367 :N T0547 545 :YEVE 1k92A 369 :YSIL T0547 550 :II 1k92A 374 :TV Number of specific fragments extracted= 3 number of extra gaps= 2 total=78743 # 1zeqX.543.72 read from T0547.t04.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)K543 (1zeqX)N77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1zeqX)L80 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I551 (1zeqX)K85 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GY 1zeqX 78 :LS T0547 547 :VEGI 1zeqX 81 :LQDI Number of specific fragments extracted= 2 number of extra gaps= 3 total=78745 # 7ahlA.543.93 read from T0547.t04.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)G544 (7ahlA)V95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (7ahlA)D100 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :K 7ahlA 94 :E T0547 545 :YEVE 7ahlA 96 :AQIS T0547 550 :II 7ahlA 101 :YY Number of specific fragments extracted= 3 number of extra gaps= 2 total=78748 # 1mixA.543.148 read from T0547.t04.many.frag # found chain 1mixA in training set T0547 543 :KGYEVEGII 1mixA 343 :KTKEVIQEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=78749 # 1u9iA.543.474 read from T0547.t04.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)G549 (1u9iA)D481 because P (beta_P) conformation "forbidden" or filtered. T0547 543 :KGYEVE 1u9iA 475 :KGPDIK T0547 550 :II 1u9iA 482 :SF Number of specific fragments extracted= 2 number of extra gaps= 1 total=78751 # 2f9hA.543.65 read from T0547.t04.many.frag # found chain 2f9hA in training set Warning: unaligning (T0547)G544 (2f9hA)N64 because P (beta_P) conformation "forbidden" or filtered. T0547 543 :K 2f9hA 63 :T T0547 545 :YEVEGII 2f9hA 65 :YTITKVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=78753 # 1p90A.543.37 read from T0547.t04.many.frag # found chain 1p90A in training set Warning: unaligning (T0547)E546 (1p90A)S139 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :KGY 1p90A 136 :KDA T0547 547 :VEGII 1p90A 140 :LVDIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=78755 # 1vr9A.543.110 read from T0547.t04.many.frag # found chain 1vr9A in training set T0547 543 :KGYEVEGII 1vr9A 99 :EEMRLKGAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78756 # 2blnA.543.271 read from T0547.t04.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)G544 (2blnA)A273 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (2blnA)E275 because P (beta_P) conformation "forbidden" or filtered. T0547 543 :K 2blnA 272 :G T0547 545 :Y 2blnA 274 :L T0547 547 :VEGII 2blnA 276 :IVTGQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=78759 # 2bo9B.543.204 read from T0547.t04.many.frag # found chain 2bo9B in training set Warning: unaligning (T0547)G544 (2bo9B)G206 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)I550 (2bo9B)N212 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :K 2bo9B 205 :Y T0547 545 :YEVEG 2bo9B 207 :TKVKH T0547 551 :I 2bo9B 213 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=78762 # 1x6oA.543.160 read from T0547.t04.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)K543 (1x6oA)G153 because T (delta_L) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 1x6oA 154 :TEQVLQTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=78763 # 1gutA.543.30 read from T0547.t04.many.frag # found chain 1gutA in training set T0547 543 :KGYEVEGII 1gutA 31 :GGNKITSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=78764 # 1uoyA.543.40 read from T0547.t04.many.frag # found chain 1uoyA in training set Warning: unaligning (T0547)K543 (1uoyA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1uoyA)K42 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1uoyA)T44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1uoyA)Q47 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :Y 1uoyA 43 :W T0547 547 :VE 1uoyA 45 :EV T0547 550 :II 1uoyA 48 :DC Number of specific fragments extracted= 3 number of extra gaps= 3 total=78767 # 1m1hA.543.90 read from T0547.t04.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)K543 (1m1hA)G91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1m1hA)K94 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GY 1m1hA 92 :EV T0547 547 :VEGII 1m1hA 95 :VVESV Number of specific fragments extracted= 2 number of extra gaps= 2 total=78769 # 1jykA.543.161 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)Y545 (1jykA)Y144 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1jykA)K145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1jykA)D148 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :KG 1jykA 142 :DD T0547 547 :VE 1jykA 146 :VQ T0547 550 :II 1jykA 149 :II Number of specific fragments extracted= 3 number of extra gaps= 2 total=78772 # 1ig0A.543.257 read from T0547.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0547)G544 (1ig0A)A259 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1ig0A)E264 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :K 1ig0A 258 :E T0547 545 :YEVE 1ig0A 260 :TLVK T0547 550 :II 1ig0A 265 :TR Number of specific fragments extracted= 3 number of extra gaps= 2 total=78775 # 2ewcA.543.22 read from T0547.t04.many.frag # found chain 2ewcA in template set Warning: unaligning (T0547)E546 (2ewcA)Y26 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :KGY 2ewcA 23 :DFY T0547 547 :VEGII 2ewcA 27 :LNYCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78777 # 1b12A.543.125 read from T0547.t04.many.frag # found chain 1b12A in template set T0547 543 :KGYEVEGII 1b12A 201 :GGEATSGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=78778 # 1bcpB.543.115 read from T0547.t04.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)K543 (1bcpB)N116 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1bcpB)S117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1bcpB)L119 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :Y 1bcpB 118 :R T0547 547 :VEGII 1bcpB 120 :CAVFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=78780 # 1mqkH.543.100 read from T0547.t04.many.frag # found chain 1mqkH in template set Warning: unaligning (T0547)K543 (1mqkH)Y101 because L (left) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 1mqkH 102 :YYAMDYWG Number of specific fragments extracted= 1 number of extra gaps= 1 total=78781 # 2b5nA.543.137 read from T0547.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)G544 (2b5nA)E525 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (2b5nA)S530 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :K 2b5nA 524 :Q T0547 545 :YEVE 2b5nA 526 :LRQI T0547 550 :II 2b5nA 531 :HT Number of specific fragments extracted= 3 number of extra gaps= 2 total=78784 # 1g1kA.544.45 read from T0547.t04.many.frag # found chain 1g1kA in template set T0547 544 :GYEVEGIIE 1g1kA 47 :LLEVVSVDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=78785 # 1x31D.544.74 read from T0547.t04.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G544 (1x31D)S75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1x31D)Y76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1x31D)A80 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVE 1x31D 77 :EFK T0547 550 :IIE 1x31D 81 :VYR Number of specific fragments extracted= 2 number of extra gaps= 2 total=78787 # 1m4jA.544.35 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)G544 (1m4jA)Q36 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVEGIIE 1m4jA 37 :LVVGSCSP Number of specific fragments extracted= 1 number of extra gaps= 1 total=78788 # 1wvqA.544.130 read from T0547.t04.many.frag # found chain 1wvqA in training set T0547 544 :GYEVEGIIE 1wvqA 131 :RRGVVGVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=78789 # 1ooyA.544.443 read from T0547.t04.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)G549 (1ooyA)E449 because E (beta_S) conformation "forbidden" or filtered. T0547 544 :GYEVE 1ooyA 444 :GLTLI T0547 550 :IIE 1ooyA 450 :LWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=78791 # 1s3sG.544.62 read from T0547.t04.many.frag # found chain 1s3sG in template set T0547 544 :GYEVEGIIE 1s3sG 306 :GRLVQKFNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=78792 # 2nlrA.544.37 read from T0547.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)G544 (2nlrA)G38 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVEGIIE 2nlrA 39 :FRVTQADG Number of specific fragments extracted= 1 number of extra gaps= 1 total=78793 # 7ahlA.544.94 read from T0547.t04.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)G544 (7ahlA)V95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (7ahlA)D100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (7ahlA)P103 because C (cis) conformation "forbidden" or filtered. T0547 545 :YEVE 7ahlA 96 :AQIS T0547 550 :II 7ahlA 101 :YY Number of specific fragments extracted= 2 number of extra gaps= 3 total=78795 # 1zh1A.544.91 read from T0547.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)G549 (1zh1A)G132 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GYEVE 1zh1A 127 :FHYVT T0547 550 :IIE 1zh1A 133 :MTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=78797 # 1k92A.544.367 read from T0547.t04.many.frag # found chain 1k92A in training set Warning: unaligning (T0547)G544 (1k92A)D368 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1k92A)N373 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVE 1k92A 369 :YSIL T0547 550 :IIE 1k92A 374 :TVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=78799 # 1zeqX.544.73 read from T0547.t04.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)G549 (1zeqX)D83 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GYEVE 1zeqX 78 :LSLLQ T0547 550 :IIE 1zeqX 84 :IKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78801 # 1fiqB.544.226 read from T0547.t04.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)G549 (1fiqB)E451 because E (beta_S) conformation "forbidden" or filtered. T0547 544 :GYEVE 1fiqB 446 :SMQVK T0547 550 :IIE 1fiqB 452 :LAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=78803 # 1u07A.544.40 read from T0547.t04.many.frag # found chain 1u07A in training set Warning: unaligning (T0547)E552 (1u07A)P198 because C (cis) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 1u07A 190 :NVQILSAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=78804 # 2bo9B.544.205 read from T0547.t04.many.frag # found chain 2bo9B in training set Warning: unaligning (T0547)G549 (2bo9B)H211 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I550 (2bo9B)N212 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (2bo9B)R214 because P (beta_P) conformation "forbidden" or filtered. T0547 544 :GYEVE 2bo9B 206 :GTKVK T0547 551 :I 2bo9B 213 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=78806 # 2blnA.544.272 read from T0547.t04.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)G549 (2blnA)T278 because E (beta_S) conformation "forbidden" or filtered. T0547 544 :GYEVE 2blnA 273 :ALEIV T0547 550 :IIE 2blnA 279 :GQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=78808 # 1m1hA.544.91 read from T0547.t04.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)E546 (1m1hA)K94 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GY 1m1hA 92 :EV T0547 547 :VEGIIE 1m1hA 95 :VVESVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=78810 # 1gp0A.544.115 read from T0547.t04.many.frag # found chain 1gp0A in training set T0547 544 :GYEVEGIIE 1gp0A 1623 :RPMLISLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=78811 # 1mixA.544.149 read from T0547.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)G549 (1mixA)Q349 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GYEVE 1mixA 344 :TKEVI T0547 550 :IIE 1mixA 350 :EWS Number of specific fragments extracted= 2 number of extra gaps= 1 total=78813 # 2f9hA.544.66 read from T0547.t04.many.frag # found chain 2f9hA in training set T0547 544 :GYEVEGIIE 2f9hA 64 :NYTITKVGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=78814 # 1p90A.544.38 read from T0547.t04.many.frag # found chain 1p90A in training set Warning: unaligning (T0547)E552 (1p90A)S145 because P (beta_P) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 1p90A 137 :DASLVDIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=78815 # 1u9iA.544.475 read from T0547.t04.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)G549 (1u9iA)D481 because P (beta_P) conformation "forbidden" or filtered. T0547 544 :GYEVE 1u9iA 476 :GPDIK T0547 550 :IIE 1u9iA 482 :SFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=78817 # 1x6oA.544.161 read from T0547.t04.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)G549 (1x6oA)Q159 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1x6oA)N162 because P (beta_P) conformation "forbidden" or filtered. T0547 544 :GYEVE 1x6oA 154 :TEQVL T0547 550 :II 1x6oA 160 :TK Number of specific fragments extracted= 2 number of extra gaps= 2 total=78819 # 1o65A.544.170 read from T0547.t04.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)G544 (1o65A)P169 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I551 (1o65A)V176 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1o65A)S177 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVEGI 1o65A 170 :LELVSR Number of specific fragments extracted= 1 number of extra gaps= 2 total=78820 # 1ig0A.544.258 read from T0547.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0547)G544 (1ig0A)A259 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1ig0A)E264 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1ig0A)G267 because T (delta_L) conformation "forbidden" or filtered. T0547 545 :YEVE 1ig0A 260 :TLVK T0547 550 :II 1ig0A 265 :TR Number of specific fragments extracted= 2 number of extra gaps= 3 total=78822 # 1gutA.544.31 read from T0547.t04.many.frag # found chain 1gutA in training set T0547 544 :GYEVEGIIE 1gutA 32 :GNKITSIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=78823 # 1u0sA.544.32 read from T0547.t04.many.frag # found chain 1u0sA in template set Warning: unaligning (T0547)E552 (1u0sA)P215 because C (cis) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 1u0sA 207 :KCEVVRTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=78824 # 1jykA.544.162 read from T0547.t04.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)G544 (1jykA)D143 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1jykA)D148 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVE 1jykA 144 :YKVQ T0547 550 :IIE 1jykA 149 :IIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=78826 # 1i12A.544.6 read from T0547.t04.many.frag # found chain 1i12A in training set Warning: unaligning (T0547)E546 (1i12A)Y8 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1i12A)R10 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1i12A)R11 because P (beta_P) conformation "forbidden" or filtered. T0547 544 :GY 1i12A 6 :GF T0547 547 :V 1i12A 9 :I T0547 550 :IIE 1i12A 12 :MEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=78829 # 1uoyA.544.41 read from T0547.t04.many.frag # found chain 1uoyA in training set Warning: unaligning (T0547)G549 (1uoyA)Q47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1uoyA)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 544 :GYEVE 1uoyA 42 :KWTEV T0547 550 :II 1uoyA 48 :DC Number of specific fragments extracted= 2 number of extra gaps= 2 total=78831 # 1vr9A.544.111 read from T0547.t04.many.frag # found chain 1vr9A in training set Warning: unaligning (T0547)G544 (1vr9A)E100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1vr9A)M101 because L (left) conformation "forbidden" or filtered. T0547 546 :EVEGIIE 1vr9A 102 :RLKGAVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=78832 # 1x31D.545.75 read from T0547.t04.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G549 (1x31D)A80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1x31D)A84 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :YEVE 1x31D 76 :YEFK T0547 550 :IIE 1x31D 81 :VYR Number of specific fragments extracted= 2 number of extra gaps= 2 total=78834 # 1g1kA.545.46 read from T0547.t04.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)A553 (1g1kA)G56 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :YEVEGIIE 1g1kA 48 :LEVVSVDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=78835 # 1ooyA.545.444 read from T0547.t04.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)E546 (1ooyA)T446 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1ooyA)E449 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :Y 1ooyA 445 :L T0547 547 :VE 1ooyA 447 :LI T0547 550 :IIEA 1ooyA 450 :LWEG Number of specific fragments extracted= 3 number of extra gaps= 2 total=78838 # 1m4jA.545.36 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)E546 (1m4jA)V38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1m4jA)P44 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :Y 1m4jA 37 :L T0547 547 :VEGII 1m4jA 39 :VGSCS T0547 553 :A 1m4jA 45 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=78841 # 1wvqA.545.131 read from T0547.t04.many.frag # found chain 1wvqA in training set T0547 545 :YEVEGIIEA 1wvqA 132 :RGVVGVVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=78842 # 7ahlA.545.95 read from T0547.t04.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)E552 (7ahlA)P103 because C (cis) conformation "forbidden" or filtered. T0547 545 :YEVEGII 7ahlA 96 :AQISDYY T0547 553 :A 7ahlA 104 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=78844 # 1s3sG.545.63 read from T0547.t04.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)G549 (1s3sG)K311 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)I550 (1s3sG)F312 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVE 1s3sG 307 :RLVQ T0547 551 :IEA 1s3sG 313 :NHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=78846 # 1zh1A.545.92 read from T0547.t04.many.frag # found chain 1zh1A in template set T0547 545 :YEVEGIIEA 1zh1A 128 :HYVTGMTTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=78847 # 2nlrA.545.38 read from T0547.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)Y545 (2nlrA)F39 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVEGIIEA 2nlrA 40 :RVTQADGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=78848 # 1gp0A.545.116 read from T0547.t04.many.frag # found chain 1gp0A in training set T0547 545 :YEVEGIIEA 1gp0A 1624 :PMLISLDKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=78849 # 1u07A.545.41 read from T0547.t04.many.frag # found chain 1u07A in training set Warning: unaligning (T0547)E552 (1u07A)P198 because C (cis) conformation "forbidden" or filtered. T0547 545 :YEVEGII 1u07A 191 :VQILSAK T0547 553 :A 1u07A 199 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=78851 # 1k92A.545.368 read from T0547.t04.many.frag # found chain 1k92A in training set Warning: unaligning (T0547)E552 (1k92A)S376 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVEGII 1k92A 369 :YSILNTV T0547 553 :A 1k92A 377 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=78853 # 1zeqX.545.74 read from T0547.t04.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)E546 (1zeqX)L80 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :Y 1zeqX 79 :S T0547 547 :VEGIIEA 1zeqX 81 :LQDIKVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=78855 # 2blnA.545.273 read from T0547.t04.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)G549 (2blnA)T278 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVE 2blnA 274 :LEIV T0547 550 :IIEA 2blnA 279 :GQAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=78857 # 1o65A.545.171 read from T0547.t04.many.frag # found chain 1o65A in template set T0547 545 :YEVEGIIEA 1o65A 170 :LELVSRVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=78858 # 2bo9B.545.206 read from T0547.t04.many.frag # found chain 2bo9B in training set T0547 545 :YEVEGIIEA 2bo9B 207 :TKVKHNSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=78859 # 1m1hA.545.92 read from T0547.t04.many.frag # found chain 1m1hA in template set Warning: unaligning (T0547)E546 (1m1hA)K94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1m1hA)G101 because T (delta_L) conformation "forbidden" or filtered. T0547 545 :Y 1m1hA 93 :V T0547 547 :VEGIIE 1m1hA 95 :VVESVE Number of specific fragments extracted= 2 number of extra gaps= 2 total=78861 # 2f9hA.545.67 read from T0547.t04.many.frag # found chain 2f9hA in training set Warning: unaligning (T0547)E546 (2f9hA)T66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (2f9hA)K69 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :Y 2f9hA 65 :Y T0547 547 :VE 2f9hA 67 :IT T0547 550 :IIEA 2f9hA 70 :VGSF Number of specific fragments extracted= 3 number of extra gaps= 2 total=78864 # 1c1yB.545.12 read from T0547.t04.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)G549 (1c1yB)N71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1c1yB)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 545 :YEVE 1c1yB 67 :RTVV T0547 550 :IIE 1c1yB 72 :VRN Number of specific fragments extracted= 2 number of extra gaps= 2 total=78866 # 1uoyA.545.42 read from T0547.t04.many.frag # found chain 1uoyA in training set T0547 545 :YEVEGIIEA 1uoyA 43 :WTEVQDCGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=78867 # 1vkkA.545.54 read from T0547.t04.many.frag # found chain 1vkkA in training set Warning: unaligning (T0547)A553 (1vkkA)N51 because L (left) conformation "forbidden" or filtered. T0547 545 :YEVEGIIE 1vkkA 43 :VVLEDELQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=78868 # 1g2bA.545.45 read from T0547.t04.many.frag # found chain 1g2bA in training set Warning: unaligning (T0547)E546 (1g2bA)T32 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :Y 1g2bA 31 :L T0547 547 :VEGIIEA 1g2bA 33 :LLNSTNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=78870 # 1xmtA.545.36 read from T0547.t04.many.frag # found chain 1xmtA in training set T0547 545 :YEVEGIIEA 1xmtA 37 :MDLVHTYVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=78871 # 1u9iA.545.476 read from T0547.t04.many.frag # found chain 1u9iA in template set T0547 545 :YEVEGIIEA 1u9iA 477 :PDIKDSFRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=78872 # 2f1lA.545.131 read from T0547.t04.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)G549 (2f1lA)H124 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVE 2f1lA 120 :GVID T0547 550 :IIEA 2f1lA 125 :LLET Number of specific fragments extracted= 2 number of extra gaps= 1 total=78874 # 1x6oA.545.162 read from T0547.t04.many.frag # found chain 1x6oA in training set T0547 545 :YEVEGIIEA 1x6oA 155 :EQVLQTKNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=78875 # 1vr9A.545.112 read from T0547.t04.many.frag # found chain 1vr9A in training set Warning: unaligning (T0547)Y545 (1vr9A)M101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1vr9A)R102 because P (beta_P) conformation "forbidden" or filtered. T0547 547 :VEGIIEA 1vr9A 103 :LKGAVSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=78876 # 1p90A.545.39 read from T0547.t04.many.frag # found chain 1p90A in training set Warning: unaligning (T0547)E552 (1p90A)S145 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :YEVEGII 1p90A 138 :ASLVDIR T0547 553 :A 1p90A 146 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=78878 1wmiA expands to /projects/compbio/data/pdb/1wmi.pdb.gz 1wmiA:# 1wmiA.545.76 read from T0547.t04.many.frag # adding 1wmiA to template set # found chain 1wmiA in template set Warning: unaligning (T0547)G549 (1wmiA)K81 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVE 1wmiA 77 :IKIL T0547 550 :IIEA 1wmiA 82 :LKPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=78880 # 1mixA.545.150 read from T0547.t04.many.frag # found chain 1mixA in training set T0547 545 :YEVEGIIEA 1mixA 345 :KEVIQEWSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=78881 # 1ooyA.546.445 read from T0547.t04.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1ooyA)L454 because P (beta_P) conformation "forbidden" or filtered. T0547 546 :EVEGIIE 1ooyA 446 :TLIELWE Number of specific fragments extracted= 1 number of extra gaps= 1 total=78882 # 1x31D.546.76 read from T0547.t04.many.frag # found chain 1x31D in template set T0547 546 :EVEGIIEAQ 1x31D 77 :EFKAVYRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=78883 # 7ahlA.546.96 read from T0547.t04.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)G549 (7ahlA)D100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (7ahlA)P103 because C (cis) conformation "forbidden" or filtered. T0547 546 :EVE 7ahlA 97 :QIS T0547 550 :II 7ahlA 101 :YY T0547 553 :AQ 7ahlA 104 :RN Number of specific fragments extracted= 3 number of extra gaps= 2 total=78886 # 1wvqA.546.132 read from T0547.t04.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)A553 (1wvqA)G140 because S (epsilon) conformation "forbidden" or filtered. T0547 546 :EVEGIIE 1wvqA 133 :GVVGVVD T0547 554 :Q 1wvqA 141 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=78888 # 1m4jA.546.37 read from T0547.t04.many.frag # found chain 1m4jA in training set T0547 546 :EVEGIIEAQ 1m4jA 38 :VVGSCSPPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=78889 # 1g1kA.546.47 read from T0547.t04.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)E552 (1g1kA)A55 because P (beta_P) conformation "forbidden" or filtered. T0547 546 :EVEGII 1g1kA 49 :EVVSVD T0547 553 :AQ 1g1kA 56 :GP Number of specific fragments extracted= 2 number of extra gaps= 1 total=78891 # 1s3sG.546.64 read from T0547.t04.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)Q554 (1s3sG)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVEGIIEA 1s3sG 308 :LVQKFNHS Number of specific fragments extracted= 1 number of extra gaps= 1 total=78892 # 1gp0A.546.117 read from T0547.t04.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)G549 (1gp0A)S1628 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVE 1gp0A 1625 :MLI T0547 550 :IIEAQ 1gp0A 1629 :LDKQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=78894 # 1u07A.546.42 read from T0547.t04.many.frag # found chain 1u07A in training set Warning: unaligning (T0547)E552 (1u07A)P198 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1u07A)N200 because L (left) conformation "forbidden" or filtered. T0547 546 :EVEGII 1u07A 192 :QILSAK T0547 553 :A 1u07A 199 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=78896 # 1c1yB.546.13 read from T0547.t04.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)G549 (1c1yB)N71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1c1yB)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 546 :EVE 1c1yB 68 :TVV T0547 550 :IIE 1c1yB 72 :VRN T0547 554 :Q 1c1yB 76 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=78899 # 1uoyA.546.43 read from T0547.t04.many.frag # found chain 1uoyA in training set T0547 546 :EVEGIIEAQ 1uoyA 44 :TEVQDCGSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=78900 # 1zh1A.546.93 read from T0547.t04.many.frag # found chain 1zh1A in template set T0547 546 :EVEGIIEAQ 1zh1A 129 :YVTGMTTDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=78901 # 1vkkA.546.55 read from T0547.t04.many.frag # found chain 1vkkA in training set Warning: unaligning (T0547)A553 (1vkkA)N51 because L (left) conformation "forbidden" or filtered. T0547 546 :EVEGIIE 1vkkA 44 :VLEDELQ T0547 554 :Q 1vkkA 52 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=78903 # 2bt6A.546.18 read from T0547.t04.many.frag # found chain 2bt6A in training set Warning: unaligning (T0547)E548 (2bt6A)T21 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (2bt6A)K22 because E (beta_S) conformation "forbidden" or filtered. T0547 546 :EV 2bt6A 19 :LT T0547 550 :IIEAQ 2bt6A 23 :GKIGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=78905 # 1o65A.546.172 read from T0547.t04.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)E552 (1o65A)S177 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVEGII 1o65A 171 :ELVSRV T0547 553 :AQ 1o65A 178 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=78907 # 2bo9B.546.207 read from T0547.t04.many.frag # found chain 2bo9B in training set Warning: unaligning (T0547)E546 (2bo9B)K208 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (2bo9B)H211 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :VE 2bo9B 209 :VK T0547 550 :IIEAQ 2bo9B 212 :NSRLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=78909 # 1zeqX.546.75 read from T0547.t04.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)I551 (1zeqX)K85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 because last residue in template chain is (1zeqX)Q88 T0547 546 :EVEGI 1zeqX 80 :LLQDI T0547 552 :EA 1zeqX 86 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=78911 # 2blnA.546.274 read from T0547.t04.many.frag # found chain 2blnA in training set T0547 546 :EVEGIIEAQ 2blnA 275 :EIVTGQAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=78912 # 1q9jA.546.388 read from T0547.t04.many.frag # found chain 1q9jA in template set T0547 546 :EVEGIIEAQ 1q9jA 389 :IIEHHGHIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=78913 # 1pzxA.546.201 read from T0547.t04.many.frag # found chain 1pzxA in template set Warning: unaligning (T0547)E552 (1pzxA)R206 because P (beta_P) conformation "forbidden" or filtered. T0547 546 :EVEGII 1pzxA 200 :IPLEKW T0547 553 :AQ 1pzxA 207 :GR Number of specific fragments extracted= 2 number of extra gaps= 1 total=78915 # 1vr9A.546.113 read from T0547.t04.many.frag # found chain 1vr9A in training set T0547 546 :EVEGIIEAQ 1vr9A 102 :RLKGAVSLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=78916 1ik9A expands to /projects/compbio/data/pdb/1ik9.pdb.gz 1ik9A:# 1ik9A.546.41 read from T0547.t04.many.frag # adding 1ik9A to template set # found chain 1ik9A in template set Warning: unaligning (T0547)G549 (1ik9A)G45 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1ik9A)S48 because P (beta_P) conformation "forbidden" or filtered. T0547 546 :EVE 1ik9A 42 :AWT T0547 550 :II 1ik9A 46 :TV T0547 553 :AQ 1ik9A 49 :ES Number of specific fragments extracted= 3 number of extra gaps= 2 total=78919 # 1gutA.546.33 read from T0547.t04.many.frag # found chain 1gutA in training set Warning: unaligning (T0547)G549 (1gutA)S37 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1gutA)S40 because P (beta_P) conformation "forbidden" or filtered. T0547 546 :EVE 1gutA 34 :KIT T0547 550 :II 1gutA 38 :II T0547 553 :AQ 1gutA 41 :LD Number of specific fragments extracted= 3 number of extra gaps= 2 total=78922 # 1k92A.546.369 read from T0547.t04.many.frag # found chain 1k92A in training set Warning: unaligning (T0547)G549 (1k92A)N373 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVE 1k92A 370 :SIL T0547 550 :IIEAQ 1k92A 374 :TVSEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=78924 # 1g2bA.546.46 read from T0547.t04.many.frag # found chain 1g2bA in training set T0547 546 :EVEGIIEAQ 1g2bA 32 :TLLNSTNKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=78925 # 1ntvA.546.114 read from T0547.t04.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)G549 (1ntvA)A140 because E (beta_S) conformation "forbidden" or filtered. T0547 546 :EVE 1ntvA 137 :RFV T0547 550 :IIEAQ 1ntvA 141 :IKTAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=78927 # 1x6oA.546.163 read from T0547.t04.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)G549 (1x6oA)Q159 because E (beta_S) conformation "forbidden" or filtered. T0547 546 :EVE 1x6oA 156 :QVL T0547 550 :IIEAQ 1x6oA 160 :TKNAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=78929 # 1wmiA.546.77 read from T0547.t04.many.frag # found chain 1wmiA in template set Warning: unaligning (T0547)Q554 (1wmiA)G86 because L (left) conformation "forbidden" or filtered. T0547 546 :EVEGIIEA 1wmiA 78 :KILKLKPR Number of specific fragments extracted= 1 number of extra gaps= 1 total=78930 # 2sicI.546.85 read from T0547.t04.many.frag # found chain 2sicI in training set Warning: unaligning (T0547)A553 (2sicI)N99 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVEGIIE 2sicI 92 :SYERVFS T0547 554 :Q 2sicI 100 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=78932 # 2f1lA.546.132 read from T0547.t04.many.frag # found chain 2f1lA in template set T0547 546 :EVEGIIEAQ 2f1lA 121 :VIDHLLETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=78933 # 1ooyA.547.446 read from T0547.t04.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)E552 (1ooyA)E452 because P (beta_P) conformation "forbidden" or filtered. T0547 547 :VEGII 1ooyA 447 :LIELW T0547 553 :AQS 1ooyA 453 :GLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=78935 # 1x31D.547.77 read from T0547.t04.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G549 (1x31D)A80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1x31D)G85 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1x31D)E86 because P (beta_P) conformation "forbidden" or filtered. T0547 547 :VE 1x31D 78 :FK T0547 550 :IIEA 1x31D 81 :VYRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=78937 # 7ahlA.547.97 read from T0547.t04.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)G549 (7ahlA)D100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (7ahlA)P103 because C (cis) conformation "forbidden" or filtered. T0547 547 :VE 7ahlA 98 :IS T0547 550 :II 7ahlA 101 :YY T0547 553 :AQS 7ahlA 104 :RNS Number of specific fragments extracted= 3 number of extra gaps= 2 total=78940 # 1wvqA.547.133 read from T0547.t04.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)A553 (1wvqA)G140 because S (epsilon) conformation "forbidden" or filtered. T0547 547 :VEGIIE 1wvqA 134 :VVGVVD T0547 554 :QS 1wvqA 141 :HS Number of specific fragments extracted= 2 number of extra gaps= 1 total=78942 # 1m4jA.547.38 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)S555 (1m4jA)D47 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :VEGIIEAQ 1m4jA 39 :VGSCSPPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=78943 # 1s3sG.547.65 read from T0547.t04.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)E548 (1s3sG)Q310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1s3sG)K311 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1s3sG)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :V 1s3sG 309 :V T0547 550 :IIEA 1s3sG 312 :FNHS T0547 555 :S 1s3sG 317 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=78946 # 1c1yB.547.14 read from T0547.t04.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)G549 (1c1yB)N71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1c1yB)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 547 :VE 1c1yB 69 :VV T0547 550 :IIE 1c1yB 72 :VRN T0547 554 :QS 1c1yB 76 :MS Number of specific fragments extracted= 3 number of extra gaps= 2 total=78949 # 1u07A.547.43 read from T0547.t04.many.frag # found chain 1u07A in training set Warning: unaligning (T0547)E552 (1u07A)P198 because C (cis) conformation "forbidden" or filtered. T0547 547 :VEGII 1u07A 193 :ILSAK T0547 553 :AQS 1u07A 199 :ANM Number of specific fragments extracted= 2 number of extra gaps= 1 total=78951 # 1g1kA.547.48 read from T0547.t04.many.frag # found chain 1g1kA in template set T0547 547 :VEGIIEAQS 1g1kA 50 :VVSVDAGPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=78952 # 1vr9A.547.114 read from T0547.t04.many.frag # found chain 1vr9A in training set T0547 547 :VEGIIEAQS 1vr9A 103 :LKGAVSLHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=78953 # 1vkkA.547.56 read from T0547.t04.many.frag # found chain 1vkkA in training set Warning: unaligning (T0547)A553 (1vkkA)N51 because L (left) conformation "forbidden" or filtered. T0547 547 :VEGIIE 1vkkA 45 :LEDELQ T0547 554 :QS 1vkkA 52 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=78955 # 1ntvA.547.115 read from T0547.t04.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)E552 (1ntvA)T143 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1ntvA)Q145 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :VEGII 1ntvA 138 :FVAIK T0547 553 :A 1ntvA 144 :A T0547 555 :S 1ntvA 146 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=78958 # 2bt6A.547.19 read from T0547.t04.many.frag # found chain 2bt6A in training set Warning: unaligning (T0547)G549 (2bt6A)K22 because E (beta_S) conformation "forbidden" or filtered. T0547 547 :VE 2bt6A 20 :TT T0547 550 :IIEAQS 2bt6A 23 :GKIGDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=78960 # 1q9jA.547.389 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)I551 (1q9jA)G394 because S (epsilon) conformation "forbidden" or filtered. T0547 547 :VEGI 1q9jA 390 :IEHH T0547 552 :EAQS 1q9jA 395 :HIAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=78962 # 1gp0A.547.118 read from T0547.t04.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)S555 (1gp0A)C1634 because L (left) conformation "forbidden" or filtered. T0547 547 :VEGIIEAQ 1gp0A 1626 :LISLDKQT Number of specific fragments extracted= 1 number of extra gaps= 1 total=78963 # 1gutA.547.34 read from T0547.t04.many.frag # found chain 1gutA in training set Warning: unaligning (T0547)E552 (1gutA)S40 because P (beta_P) conformation "forbidden" or filtered. T0547 547 :VEGII 1gutA 35 :ITSII T0547 553 :AQS 1gutA 41 :LDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=78965 # 1ik9A.547.42 read from T0547.t04.many.frag # found chain 1ik9A in template set Warning: unaligning (T0547)G549 (1ik9A)G45 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1ik9A)S48 because P (beta_P) conformation "forbidden" or filtered. T0547 547 :VE 1ik9A 43 :WT T0547 550 :II 1ik9A 46 :TV T0547 553 :AQS 1ik9A 49 :ESE Number of specific fragments extracted= 3 number of extra gaps= 2 total=78968 # 2bo9B.547.208 read from T0547.t04.many.frag # found chain 2bo9B in training set Warning: unaligning (T0547)G549 (2bo9B)H211 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 because last residue in template chain is (2bo9B)K217 T0547 547 :VE 2bo9B 209 :VK T0547 550 :IIEAQ 2bo9B 212 :NSRLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=78970 # 1yc61.547.70 read from T0547.t04.many.frag # found chain 1yc61 in template set Warning: unaligning (T0547)E548 (1yc61)C107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1yc61)K111 because P (beta_P) conformation "forbidden" or filtered. T0547 547 :V 1yc61 106 :A T0547 549 :GII 1yc61 108 :VAE T0547 553 :AQS 1yc61 112 :QAQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=78973 1tw6A expands to /projects/compbio/data/pdb/1tw6.pdb.gz 1tw6A:# 1tw6A.547.91 read from T0547.t04.many.frag # adding 1tw6A to template set # found chain 1tw6A in template set Warning: unaligning (T0547)E548 (1tw6A)Q132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1tw6A)G137 because T (delta_L) conformation "forbidden" or filtered. T0547 547 :V 1tw6A 131 :L T0547 549 :GIIE 1tw6A 133 :SWKR T0547 554 :QS 1tw6A 138 :DD Number of specific fragments extracted= 3 number of extra gaps= 2 total=78976 # 2sicI.547.86 read from T0547.t04.many.frag # found chain 2sicI in training set Warning: unaligning (T0547)E548 (2sicI)E94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (2sicI)N99 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :V 2sicI 93 :Y T0547 549 :GIIE 2sicI 95 :RVFS T0547 554 :QS 2sicI 100 :EC Number of specific fragments extracted= 3 number of extra gaps= 2 total=78979 # 1x6oA.547.164 read from T0547.t04.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)I551 (1x6oA)K161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1x6oA)A164 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 because last residue in template chain is (1x6oA)E165 T0547 547 :VEGI 1x6oA 157 :VLQT T0547 552 :EA 1x6oA 162 :NA Number of specific fragments extracted= 2 number of extra gaps= 2 total=78981 # 2f1lA.547.133 read from T0547.t04.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)S555 (2f1lA)A130 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :VEGIIEAQ 2f1lA 122 :IDHLLETG Number of specific fragments extracted= 1 number of extra gaps= 1 total=78982 # 1mixA.547.152 read from T0547.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0547)E552 (1mixA)S352 because P (beta_P) conformation "forbidden" or filtered. T0547 547 :VEGII 1mixA 347 :VIQEW T0547 553 :AQS 1mixA 353 :LTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=78984 # 1uoyA.547.44 read from T0547.t04.many.frag # found chain 1uoyA in training set Warning: unaligning (T0547)G549 (1uoyA)Q47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1uoyA)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 547 :VE 1uoyA 45 :EV T0547 550 :II 1uoyA 48 :DC T0547 553 :AQS 1uoyA 51 :SSS Number of specific fragments extracted= 3 number of extra gaps= 2 total=78987 # 2a6aA.547.145 read from T0547.t04.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)G549 (2a6aA)S136 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :VE 2a6aA 134 :EP T0547 550 :IIEAQS 2a6aA 137 :VVSDEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=78989 # 1h7sA.547.213 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)E552 (1h7sA)G219 because T (delta_L) conformation "forbidden" or filtered. T0547 547 :VEGII 1h7sA 214 :VVCTG T0547 553 :AQS 1h7sA 220 :SPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=78991 # 1p90A.547.41 read from T0547.t04.many.frag # found chain 1p90A in training set T0547 547 :VEGIIEAQS 1p90A 140 :LVDIRSTLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=78992 # 1o65A.547.173 read from T0547.t04.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)E552 (1o65A)S177 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1o65A)D178 because G (3-10) conformation "forbidden" or filtered. T0547 547 :VEGII 1o65A 172 :LVSRV T0547 554 :QS 1o65A 179 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=78994 # 2ab5A.547.214 read from T0547.t04.many.frag # found chain 2ab5A in template set Warning: unaligning (T0547)I551 (2ab5A)K467 because G (3-10) conformation "forbidden" or filtered. T0547 547 :VEGI 2ab5A 463 :KMTT T0547 552 :EAQS 2ab5A 468 :SIND Number of specific fragments extracted= 2 number of extra gaps= 1 total=78996 # 1ooyA.548.447 read from T0547.t04.many.frag # found chain 1ooyA in training set T0547 548 :EGIIEAQSI 1ooyA 448 :IELWEGLTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78997 # 2bt6A.548.20 read from T0547.t04.many.frag # found chain 2bt6A in training set Warning: unaligning (T0547)E548 (2bt6A)T21 because Y (epsilon') conformation "forbidden" or filtered. T0547 549 :GIIEAQSI 2bt6A 22 :KGKIGDSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=78998 # 1gutA.548.35 read from T0547.t04.many.frag # found chain 1gutA in training set T0547 548 :EGIIEAQSI 1gutA 36 :TSIISLDSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=78999 # 1c1yB.548.15 read from T0547.t04.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)G549 (1c1yB)N71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1c1yB)M76 because P (beta_P) conformation "forbidden" or filtered. T0547 548 :E 1c1yB 70 :V T0547 550 :IIEA 1c1yB 72 :VRNG T0547 555 :SI 1c1yB 77 :SL Number of specific fragments extracted= 3 number of extra gaps= 2 total=79002 # 1ntvA.548.116 read from T0547.t04.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)G549 (1ntvA)A140 because E (beta_S) conformation "forbidden" or filtered. T0547 548 :E 1ntvA 139 :V T0547 550 :IIEAQSI 1ntvA 141 :IKTAQAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79004 # 1vr9A.548.115 read from T0547.t04.many.frag # found chain 1vr9A in training set T0547 548 :EGIIEAQSI 1vr9A 104 :KGAVSLHDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79005 # 1ik9A.548.43 read from T0547.t04.many.frag # found chain 1ik9A in template set T0547 548 :EGIIEAQSI 1ik9A 44 :TGTVSESEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79006 # 1vkkA.548.57 read from T0547.t04.many.frag # found chain 1vkkA in training set Warning: unaligning (T0547)G549 (1vkkA)D47 because E (beta_S) conformation "forbidden" or filtered. T0547 548 :E 1vkkA 46 :E T0547 550 :IIEAQSI 1vkkA 48 :ELQNISP Number of specific fragments extracted= 2 number of extra gaps= 1 total=79008 # 2a6aA.548.146 read from T0547.t04.many.frag # found chain 2a6aA in template set T0547 548 :EGIIEAQSI 2a6aA 135 :PSVVSDEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79009 # 1h7sA.548.214 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G549 (1h7sA)C216 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1h7sA)G219 because T (delta_L) conformation "forbidden" or filtered. T0547 548 :E 1h7sA 215 :V T0547 550 :II 1h7sA 217 :TG T0547 553 :AQSI 1h7sA 220 :SPSI Number of specific fragments extracted= 3 number of extra gaps= 2 total=79012 # 1yc61.548.71 read from T0547.t04.many.frag # found chain 1yc61 in template set Warning: unaligning (T0547)E548 (1yc61)C107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1yc61)V108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1yc61)Q112 because E (beta_S) conformation "forbidden" or filtered. T0547 550 :IIE 1yc61 109 :AEK T0547 554 :QSI 1yc61 113 :AQA Number of specific fragments extracted= 2 number of extra gaps= 2 total=79014 # 1tw6A.548.92 read from T0547.t04.many.frag # found chain 1tw6A in template set Warning: unaligning (T0547)Q554 (1tw6A)D138 because P (beta_P) conformation "forbidden" or filtered. T0547 548 :EGIIEA 1tw6A 132 :QSWKRG T0547 555 :SI 1tw6A 139 :DP Number of specific fragments extracted= 2 number of extra gaps= 1 total=79016 # 1x31D.548.78 read from T0547.t04.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G549 (1x31D)A80 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :E 1x31D 79 :K T0547 550 :IIEAQSI 1x31D 81 :VYRAGEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79018 # 1s3sG.548.66 read from T0547.t04.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)G549 (1s3sG)K311 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1s3sG)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :E 1s3sG 310 :Q T0547 550 :IIEA 1s3sG 312 :FNHS T0547 555 :SI 1s3sG 317 :RI Number of specific fragments extracted= 3 number of extra gaps= 2 total=79021 # 1q9jA.548.390 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)E548 (1q9jA)E391 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I551 (1q9jA)G394 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1q9jA)I396 because E (beta_S) conformation "forbidden" or filtered. T0547 549 :GI 1q9jA 392 :HH T0547 552 :E 1q9jA 395 :H T0547 554 :QSI 1q9jA 397 :AEP Number of specific fragments extracted= 3 number of extra gaps= 3 total=79024 # 1r6jA.548.27 read from T0547.t04.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)A553 (1r6jA)D224 because T (delta_L) conformation "forbidden" or filtered. T0547 548 :EGIIE 1r6jA 219 :TSIVK T0547 554 :QSI 1r6jA 225 :SSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79026 # 2ab5A.548.215 read from T0547.t04.many.frag # found chain 2ab5A in template set Warning: unaligning (T0547)E552 (2ab5A)S468 because P (beta_P) conformation "forbidden" or filtered. T0547 548 :EGII 2ab5A 464 :MTTK T0547 553 :AQSI 2ab5A 469 :INDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=79028 # 1wvqA.548.134 read from T0547.t04.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)A553 (1wvqA)G140 because S (epsilon) conformation "forbidden" or filtered. T0547 548 :EGIIE 1wvqA 135 :VGVVD T0547 554 :QSI 1wvqA 141 :HSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=79030 # 7ahlA.548.98 read from T0547.t04.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)G549 (7ahlA)D100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I550 (7ahlA)Y101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (7ahlA)P103 because C (cis) conformation "forbidden" or filtered. T0547 548 :E 7ahlA 99 :S T0547 551 :I 7ahlA 102 :Y T0547 553 :AQSI 7ahlA 104 :RNSI Number of specific fragments extracted= 3 number of extra gaps= 2 total=79033 # 1u07A.548.44 read from T0547.t04.many.frag # found chain 1u07A in training set Warning: unaligning (T0547)E552 (1u07A)P198 because C (cis) conformation "forbidden" or filtered. T0547 548 :EGII 1u07A 194 :LSAK T0547 553 :AQSI 1u07A 199 :ANMF Number of specific fragments extracted= 2 number of extra gaps= 1 total=79035 # 1m4jA.548.39 read from T0547.t04.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)S555 (1m4jA)D47 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :EGIIEAQ 1m4jA 40 :GSCSPPS T0547 556 :I 1m4jA 48 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=79037 # 2sicI.548.87 read from T0547.t04.many.frag # found chain 2sicI in training set Warning: unaligning (T0547)G549 (2sicI)R95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (2sicI)N99 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :E 2sicI 94 :E T0547 550 :IIE 2sicI 96 :VFS T0547 554 :QSI 2sicI 100 :ECE Number of specific fragments extracted= 3 number of extra gaps= 2 total=79040 # 1k2xA.548.96 read from T0547.t04.many.frag # found chain 1k2xA in training set Warning: unaligning (T0547)A553 (1k2xA)L103 because E (beta_S) conformation "forbidden" or filtered. T0547 548 :EGIIE 1k2xA 98 :AGVSH T0547 554 :QSI 1k2xA 104 :RNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=79042 1sd4A expands to /projects/compbio/data/pdb/1sd4.pdb.gz 1sd4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1sd4A.548.69 read from T0547.t04.many.frag # adding 1sd4A to template set # found chain 1sd4A in template set Warning: unaligning (T0547)G549 (1sd4A)S71 because P (beta_P) conformation "forbidden" or filtered. T0547 548 :E 1sd4A 70 :S T0547 550 :IIEAQSI 1sd4A 72 :NIKEDDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=79044 # 1o65A.548.174 read from T0547.t04.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)G549 (1o65A)S174 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1o65A)S177 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :E 1o65A 173 :V T0547 550 :II 1o65A 175 :RV T0547 553 :AQSI 1o65A 178 :DVTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=79047 1a7j expands to /projects/compbio/data/pdb/1a7j.pdb.gz 1a7j:Warning: there is no chain 1a7j will retry with 1a7jA # 1a7j.548.259 read from T0547.t04.many.frag # adding 1a7j to template set # found chain 1a7j in template set Warning: unaligning (T0547)G549 (1a7j)I261 because E (beta_S) conformation "forbidden" or filtered. T0547 548 :E 1a7j 260 :S T0547 550 :IIEAQSI 1a7j 262 :VVPGNKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=79049 1r9fA expands to /projects/compbio/data/pdb/1r9f.pdb.gz 1r9fA:Skipped atom 1489, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 1491, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 1596, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 1658, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 1660, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 1662, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 1731, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 1733, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 1735, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 1737, because occupancy 0.500 <= existing 0.500 in 1r9fA # 1r9fA.548.48 read from T0547.t04.many.frag # adding 1r9fA to template set # found chain 1r9fA in template set Warning: unaligning (T0547)G549 (1r9fA)R72 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1r9fA)R78 because T (delta_L) conformation "forbidden" or filtered. T0547 548 :E 1r9fA 71 :K T0547 550 :IIEAQ 1r9fA 73 :YLRYD T0547 556 :I 1r9fA 79 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=79052 1mzgA expands to /projects/compbio/data/pdb/1mzg.pdb.gz 1mzgA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1mzgA.548.69 read from T0547.t04.many.frag # adding 1mzgA to template set # found chain 1mzgA in template set Warning: unaligning (T0547)G549 (1mzgA)G71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I550 (1mzgA)D72 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :E 1mzgA 70 :Q T0547 551 :IEAQSI 1mzgA 73 :SDAAIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=79054 # 2fa1A.548.65 read from T0547.t04.many.frag # found chain 2fa1A in training set Warning: unaligning (T0547)G549 (2fa1A)H148 because E (beta_S) conformation "forbidden" or filtered. T0547 548 :E 2fa1A 147 :D T0547 550 :IIEAQSI 2fa1A 149 :YFADLTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=79056 1r4xA expands to /projects/compbio/data/pdb/1r4x.pdb.gz 1r4xA:Bad short name: AS for alphabet: pdb_atoms # 1r4xA.548.257 read from T0547.t04.many.frag # adding 1r4xA to template set # found chain 1r4xA in template set T0547 548 :EGIIEAQSI 1r4xA 857 :TARSLEELP Number of specific fragments extracted= 1 number of extra gaps= 0 total=79057 # 1ooyA.549.448 read from T0547.t04.many.frag # found chain 1ooyA in training set T0547 549 :GIIEAQSIL 1ooyA 449 :ELWEGLTVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79058 # 1ik9A.549.44 read from T0547.t04.many.frag # found chain 1ik9A in template set T0547 549 :GIIEAQSIL 1ik9A 45 :GTVSESEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79059 # 2bt6A.549.21 read from T0547.t04.many.frag # found chain 2bt6A in training set Warning: unaligning (T0547)G549 (2bt6A)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (2bt6A)I25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (2bt6A)G26 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (2bt6A)D27 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 2bt6A 23 :GK T0547 555 :SIL 2bt6A 28 :SLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=79061 # 2a6aA.549.147 read from T0547.t04.many.frag # found chain 2a6aA in template set T0547 549 :GIIEAQSIL 2a6aA 136 :SVVSDEELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79062 # 1h7sA.549.215 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G549 (1h7sA)C216 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1h7sA)G219 because T (delta_L) conformation "forbidden" or filtered. T0547 550 :II 1h7sA 217 :TG T0547 553 :AQSIL 1h7sA 220 :SPSIK Number of specific fragments extracted= 2 number of extra gaps= 2 total=79064 # 1a7j.549.260 read from T0547.t04.many.frag # found chain 1a7j in template set T0547 549 :GIIEAQSIL 1a7j 261 :IVVPGNKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79065 # 1c1yB.549.16 read from T0547.t04.many.frag # found chain 1c1yB in template set T0547 549 :GIIEAQSIL 1c1yB 71 :NVRNGMSLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=79066 # 1gutA.549.36 read from T0547.t04.many.frag # found chain 1gutA in training set T0547 549 :GIIEAQSIL 1gutA 37 :SIISLDSVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79067 # 1yc61.549.72 read from T0547.t04.many.frag # found chain 1yc61 in template set T0547 549 :GIIEAQSIL 1yc61 108 :VAEKQAQAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79068 # 1vkkA.549.58 read from T0547.t04.many.frag # found chain 1vkkA in training set T0547 549 :GIIEAQSIL 1vkkA 47 :DELQNISPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79069 # 1ntvA.549.117 read from T0547.t04.many.frag # found chain 1ntvA in training set T0547 549 :GIIEAQSIL 1ntvA 140 :AIKTAQAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79070 # 2ab5A.549.216 read from T0547.t04.many.frag # found chain 2ab5A in template set T0547 549 :GIIEAQSIL 2ab5A 465 :TTKSINDIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79071 # 1tw6A.549.93 read from T0547.t04.many.frag # found chain 1tw6A in template set Warning: unaligning (T0547)A553 (1tw6A)G137 because T (delta_L) conformation "forbidden" or filtered. T0547 549 :GIIE 1tw6A 133 :SWKR T0547 554 :QSIL 1tw6A 138 :DDPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=79073 # 1s3sG.549.67 read from T0547.t04.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)G549 (1s3sG)K311 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1s3sG)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 550 :IIEA 1s3sG 312 :FNHS T0547 555 :SIL 1s3sG 317 :RIS Number of specific fragments extracted= 2 number of extra gaps= 2 total=79075 # 1vr9A.549.116 read from T0547.t04.many.frag # found chain 1vr9A in training set T0547 549 :GIIEAQSIL 1vr9A 105 :GAVSLHDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79076 # 1o65A.549.175 read from T0547.t04.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)G549 (1o65A)S174 because E (beta_S) conformation "forbidden" or filtered. T0547 550 :IIEAQSIL 1o65A 175 :RVSDVTVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=79077 1j5uA expands to /projects/compbio/data/pdb/1j5u.pdb.gz 1j5uA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1j5uA.549.24 read from T0547.t04.many.frag # adding 1j5uA to template set # found chain 1j5uA in template set Warning: unaligning (T0547)A553 (1j5uA)G23 because Y (epsilon') conformation "forbidden" or filtered. T0547 549 :GIIE 1j5uA 19 :YEIS T0547 554 :QSIL 1j5uA 24 :NSYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79079 # 2fa1A.549.66 read from T0547.t04.many.frag # found chain 2fa1A in training set T0547 549 :GIIEAQSIL 2fa1A 148 :HYFADLTLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=79080 # 1q9jA.549.391 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)I551 (1q9jA)G394 because S (epsilon) conformation "forbidden" or filtered. T0547 549 :GI 1q9jA 392 :HH T0547 552 :EAQSIL 1q9jA 395 :HIAEPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=79082 # 1mzgA.549.70 read from T0547.t04.many.frag # found chain 1mzgA in template set Warning: unaligning (T0547)G549 (1mzgA)G71 because Y (epsilon') conformation "forbidden" or filtered. T0547 550 :IIEAQSIL 1mzgA 72 :DSDAAIVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=79083 # 1d8hA.549.256 read from T0547.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)G549 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)E496 Warning: unaligning (T0547)I550 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)E496 Warning: unaligning (T0547)Q554 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)A501 Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 551 :IEA 1d8hA 497 :INT Number of specific fragments extracted= 1 number of extra gaps= 2 total=79084 # 1r6jA.549.28 read from T0547.t04.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)G549 (1r6jA)S220 because Y (epsilon') conformation "forbidden" or filtered. T0547 550 :IIEAQSIL 1r6jA 221 :IVKDSSAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=79085 # 1p9yA.549.19 read from T0547.t04.many.frag # found chain 1p9yA in template set Warning: unaligning (T0547)G549 (1p9yA)I17 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1p9yA)A20 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 1p9yA 18 :TI T0547 553 :AQSIL 1p9yA 21 :ADSIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=79087 # 1uylA.549.92 read from T0547.t04.many.frag # found chain 1uylA in training set T0547 549 :GIIEAQSIL 1uylA 93 :DTGIGMTKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79088 # 1r4xA.549.258 read from T0547.t04.many.frag # found chain 1r4xA in template set T0547 549 :GIIEAQSIL 1r4xA 858 :ARSLEELPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79089 # 1xkrA.549.187 read from T0547.t04.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)G549 (1xkrA)M187 because E (beta_S) conformation "forbidden" or filtered. T0547 550 :IIEAQSIL 1xkrA 188 :IPKPGYLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=79090 # 1k2xA.549.97 read from T0547.t04.many.frag # found chain 1k2xA in training set Warning: unaligning (T0547)I551 (1k2xA)S101 because G (3-10) conformation "forbidden" or filtered. T0547 549 :GI 1k2xA 99 :GV T0547 552 :EAQSIL 1k2xA 102 :HLRNPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=79092 # 1r9fA.549.49 read from T0547.t04.many.frag # found chain 1r9fA in template set T0547 549 :GIIEAQSIL 1r9fA 72 :RYLRYDRTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79093 # 2ab5A.549.181 read from T0547.t04.many.frag # found chain 2ab5A in template set Warning: unaligning (T0547)G549 (2ab5A)F430 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (2ab5A)N436 because L (left) conformation "forbidden" or filtered. T0547 550 :IIEAQ 2ab5A 431 :EVSMN T0547 556 :IL 2ab5A 437 :NM Number of specific fragments extracted= 2 number of extra gaps= 2 total=79095 # 1gtkA.549.275 read from T0547.t04.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)G549 (1gtkA)R276 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1gtkA)A279 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 1gtkA 277 :RG T0547 553 :AQSIL 1gtkA 280 :PQDAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=79097 # 1ooyA.550.449 read from T0547.t04.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1ooyA)L454 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :IIE 1ooyA 450 :LWE T0547 555 :SILD 1ooyA 455 :TVDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=79099 # 2bt6A.550.22 read from T0547.t04.many.frag # found chain 2bt6A in training set Warning: unaligning (T0547)A553 (2bt6A)G26 because T (delta_L) conformation "forbidden" or filtered. T0547 550 :IIE 2bt6A 23 :GKI T0547 554 :QSILD 2bt6A 27 :DSLLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=79101 # 1a7j.550.261 read from T0547.t04.many.frag # found chain 1a7j in template set T0547 550 :IIEAQSILD 1a7j 262 :VVPGNKLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79102 # 2a6aA.550.148 read from T0547.t04.many.frag # found chain 2a6aA in template set T0547 550 :IIEAQSILD 2a6aA 137 :VVSDEELEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79103 # 1c1yB.550.17 read from T0547.t04.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)E552 (1c1yB)N74 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 1c1yB 72 :VR T0547 553 :AQSILD 1c1yB 75 :GMSLHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=79105 # 1h7sA.550.216 read from T0547.t04.many.frag # found chain 1h7sA in template set T0547 550 :IIEAQSILD 1h7sA 217 :TGGSPSIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79106 # 1ik9A.550.45 read from T0547.t04.many.frag # found chain 1ik9A in template set Warning: unaligning (T0547)E552 (1ik9A)S48 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 1ik9A 46 :TV T0547 553 :AQSILD 1ik9A 49 :ESEISQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=79108 # 1yc61.550.73 read from T0547.t04.many.frag # found chain 1yc61 in template set T0547 550 :IIEAQSILD 1yc61 109 :AEKQAQAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79109 # 2ab5A.550.217 read from T0547.t04.many.frag # found chain 2ab5A in template set T0547 550 :IIEAQSILD 2ab5A 466 :TKSINDIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=79110 # 1ntvA.550.118 read from T0547.t04.many.frag # found chain 1ntvA in training set T0547 550 :IIEAQSILD 1ntvA 141 :IKTAQAAEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=79111 # 1o65A.550.176 read from T0547.t04.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)I551 (1o65A)V176 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1o65A)S177 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1o65A)D178 because G (3-10) conformation "forbidden" or filtered. T0547 550 :I 1o65A 175 :R T0547 554 :QSILD 1o65A 179 :VTVQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79113 # 1s3sG.550.68 read from T0547.t04.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)Q554 (1s3sG)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 550 :IIEA 1s3sG 312 :FNHS T0547 555 :SILD 1s3sG 317 :RISD Number of specific fragments extracted= 2 number of extra gaps= 1 total=79115 # 1j5uA.550.25 read from T0547.t04.many.frag # found chain 1j5uA in template set Warning: unaligning (T0547)S555 (1j5uA)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 550 :IIEAQ 1j5uA 20 :EISGN T0547 556 :ILD 1j5uA 26 :YEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79117 # 2fa1A.550.67 read from T0547.t04.many.frag # found chain 2fa1A in training set T0547 550 :IIEAQSILD 2fa1A 149 :YFADLTLWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=79118 # 1l1lA.550.691 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 550 :IIEAQSILD 1l1lA 692 :PIDKETYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79119 # 1xkrA.550.188 read from T0547.t04.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)E552 (1xkrA)K190 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 1xkrA 188 :IP T0547 553 :AQSILD 1xkrA 191 :PGYLVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=79121 # 1gutA.550.37 read from T0547.t04.many.frag # found chain 1gutA in training set T0547 550 :IIEAQSILD 1gutA 38 :IISLDSVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79122 # 1q9jA.550.392 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)S555 (1q9jA)E398 because L (left) conformation "forbidden" or filtered. T0547 550 :IIEAQ 1q9jA 393 :HGHIA T0547 556 :ILD 1q9jA 399 :PGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=79124 # 1tw6A.550.94 read from T0547.t04.many.frag # found chain 1tw6A in template set T0547 550 :IIEAQSILD 1tw6A 134 :WKRGDDPWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79125 # 1dlwA.550.57 read from T0547.t04.many.frag # found chain 1dlwA in training set T0547 550 :IIEAQSILD 1dlwA 58 :AWTGRNLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79126 # 1d8hA.550.257 read from T0547.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)I550 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)E496 Warning: unaligning (T0547)Q554 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)A501 Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 551 :IEA 1d8hA 497 :INT T0547 558 :D 1d8hA 504 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=79128 # 1vr9A.550.117 read from T0547.t04.many.frag # found chain 1vr9A in training set T0547 550 :IIEAQSILD 1vr9A 106 :AVSLHDFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79129 # 1vkkA.550.59 read from T0547.t04.many.frag # found chain 1vkkA in training set Warning: unaligning (T0547)A553 (1vkkA)N51 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1vkkA)I52 because E (beta_S) conformation "forbidden" or filtered. T0547 550 :IIE 1vkkA 48 :ELQ T0547 555 :SILD 1vkkA 53 :SPEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79131 1svmA expands to /projects/compbio/data/pdb/1svm.pdb.gz 1svmA:# 1svmA.550.296 read from T0547.t04.many.frag # adding 1svmA to template set # found chain 1svmA in template set T0547 550 :IIEAQSILD 1svmA 547 :FRPKDYLKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=79132 # 1dmlA.550.267 read from T0547.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)Q554 (1dmlA)C272 because L (left) conformation "forbidden" or filtered. T0547 550 :IIEA 1dmlA 268 :VVDD T0547 555 :SILD 1dmlA 273 :SMRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79134 # 1xk5A.550.179 read from T0547.t04.many.frag # found chain 1xk5A in template set T0547 550 :IIEAQSILD 1xk5A 276 :WLRPYMVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79135 # 1uylA.550.93 read from T0547.t04.many.frag # found chain 1uylA in training set Warning: unaligning (T0547)A553 (1uylA)G97 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1uylA)T99 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :IIE 1uylA 94 :TGI T0547 554 :Q 1uylA 98 :M T0547 556 :ILD 1uylA 100 :KAD Number of specific fragments extracted= 3 number of extra gaps= 2 total=79138 # 1tv9A.550.309 read from T0547.t04.many.frag # found chain 1tv9A in template set Warning: unaligning (T0547)S555 (1tv9A)S315 because Y (epsilon') conformation "forbidden" or filtered. T0547 550 :IIEAQ 1tv9A 310 :PLPVD T0547 556 :ILD 1tv9A 316 :EKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=79140 # 1l8aA.550.827 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)E552 (1l8aA)R830 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1l8aA)D832 because Y (epsilon') conformation "forbidden" or filtered. T0547 550 :II 1l8aA 828 :FG T0547 553 :A 1l8aA 831 :S T0547 555 :SILD 1l8aA 833 :SREN Number of specific fragments extracted= 3 number of extra gaps= 2 total=79143 # 1w2yA.550.194 read from T0547.t04.many.frag # found chain 1w2yA in training set T0547 550 :IIEAQSILD 1w2yA 195 :TWNGKEDNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79144 # 2bt6A.551.23 read from T0547.t04.many.frag # found chain 2bt6A in training set T0547 551 :IEAQSILDT 2bt6A 24 :KIGDSLLDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79145 # 1h7sA.551.217 read from T0547.t04.many.frag # found chain 1h7sA in template set T0547 551 :IEAQSILDT 1h7sA 218 :GGSPSIKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=79146 # 1a7j.551.262 read from T0547.t04.many.frag # found chain 1a7j in template set T0547 551 :IEAQSILDT 1a7j 263 :VPGNKLDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79147 # 1ooyA.551.450 read from T0547.t04.many.frag # found chain 1ooyA in training set T0547 551 :IEAQSILDT 1ooyA 451 :WEGLTVDDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79148 # 1dlwA.551.58 read from T0547.t04.many.frag # found chain 1dlwA in training set T0547 551 :IEAQSILDT 1dlwA 59 :WTGRNLKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79149 # 2a6aA.551.149 read from T0547.t04.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)E552 (2a6aA)S139 because P (beta_P) conformation "forbidden" or filtered. T0547 551 :I 2a6aA 138 :V T0547 553 :AQSILDT 2a6aA 140 :DEELEEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=79151 # 1yc61.551.74 read from T0547.t04.many.frag # found chain 1yc61 in template set Warning: unaligning (T0547)E552 (1yc61)K111 because P (beta_P) conformation "forbidden" or filtered. T0547 551 :I 1yc61 110 :E T0547 553 :AQSILDT 1yc61 112 :QAQAEAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79153 # 1c1yB.551.18 read from T0547.t04.many.frag # found chain 1c1yB in template set T0547 551 :IEAQSILDT 1c1yB 73 :RNGMSLHDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=79154 # 1o65A.551.177 read from T0547.t04.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)E552 (1o65A)S177 because Y (epsilon') conformation "forbidden" or filtered. T0547 551 :I 1o65A 176 :V T0547 553 :AQSILDT 1o65A 178 :DVTVQEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79156 # 1ntvA.551.119 read from T0547.t04.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)E552 (1ntvA)T143 because P (beta_P) conformation "forbidden" or filtered. T0547 551 :I 1ntvA 142 :K T0547 553 :AQSILDT 1ntvA 144 :AQAAEPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=79158 # 1tv9A.551.310 read from T0547.t04.many.frag # found chain 1tv9A in template set Warning: unaligning (T0547)E552 (1tv9A)P312 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1tv9A)S315 because Y (epsilon') conformation "forbidden" or filtered. T0547 551 :I 1tv9A 311 :L T0547 553 :AQ 1tv9A 313 :VD T0547 556 :ILDT 1tv9A 316 :EKDI Number of specific fragments extracted= 3 number of extra gaps= 2 total=79161 # 1j5uA.551.26 read from T0547.t04.many.frag # found chain 1j5uA in template set Warning: unaligning (T0547)A553 (1j5uA)G23 because Y (epsilon') conformation "forbidden" or filtered. T0547 551 :IE 1j5uA 21 :IS T0547 554 :QSILDT 1j5uA 24 :NSYEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=79163 # 1ik9A.551.46 read from T0547.t04.many.frag # found chain 1ik9A in template set Warning: unaligning (T0547)E552 (1ik9A)S48 because P (beta_P) conformation "forbidden" or filtered. T0547 551 :I 1ik9A 47 :V T0547 553 :AQSILDT 1ik9A 49 :ESEISQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79165 # 1l3lA.551.185 read from T0547.t04.many.frag # found chain 1l3lA in training set T0547 551 :IEAQSILDT 1l3lA 186 :AVGKTMEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79166 # 2ab5A.551.218 read from T0547.t04.many.frag # found chain 2ab5A in template set T0547 551 :IEAQSILDT 2ab5A 467 :KSINDIKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79167 # 1s3sG.551.69 read from T0547.t04.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)Q554 (1s3sG)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 551 :IEA 1s3sG 313 :NHS T0547 555 :SILDT 1s3sG 317 :RISDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=79169 # 1l8aA.551.828 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)E552 (1l8aA)R830 because Y (epsilon') conformation "forbidden" or filtered. T0547 551 :I 1l8aA 829 :G T0547 553 :AQSILDT 1l8aA 831 :SDSRENL Number of specific fragments extracted= 2 number of extra gaps= 1 total=79171 # 1dmlA.551.268 read from T0547.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)Q554 (1dmlA)C272 because L (left) conformation "forbidden" or filtered. T0547 551 :IEA 1dmlA 269 :VDD T0547 555 :SILDT 1dmlA 273 :SMRAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=79173 # 2fa1A.551.68 read from T0547.t04.many.frag # found chain 2fa1A in training set T0547 551 :IEAQSILDT 2fa1A 150 :FADLTLWPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79174 # 1xkrA.551.189 read from T0547.t04.many.frag # found chain 1xkrA in training set T0547 551 :IEAQSILDT 1xkrA 189 :PKPGYLVKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79175 # 1d8hA.551.258 read from T0547.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)E552 (1d8hA)N498 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)A501 Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 551 :I 1d8hA 497 :I T0547 553 :A 1d8hA 499 :T T0547 558 :DT 1d8hA 504 :NA Number of specific fragments extracted= 3 number of extra gaps= 2 total=79178 # 1b4fA.551.8 read from T0547.t04.many.frag # found chain 1b4fA in template set Warning: unaligning (T0547)A553 (1b4fA)F11 because Y (epsilon') conformation "forbidden" or filtered. T0547 551 :IE 1b4fA 9 :TS T0547 554 :QSILDT 1b4fA 12 :NTVDEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=79180 2a8eA expands to /projects/compbio/data/pdb/2a8e.pdb.gz 2a8eA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2a8eA.551.104 read from T0547.t04.many.frag # adding 2a8eA to template set # found chain 2a8eA in template set Warning: unaligning (T0547)A553 (2a8eA)S107 because P (beta_P) conformation "forbidden" or filtered. T0547 551 :IE 2a8eA 105 :YE T0547 554 :QSILDT 2a8eA 108 :PIKEEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=79182 # 1jbwA.551.385 read from T0547.t04.many.frag # found chain 1jbwA in template set Warning: unaligning (T0547)I551 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jbwA)R386 T0547 552 :EAQSILDT 1jbwA 387 :LKDSWQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79183 # 1dljA.551.274 read from T0547.t04.many.frag # found chain 1dljA in training set T0547 551 :IEAQSILDT 1dljA 275 :IPQTLIEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79184 # 1l1lA.551.692 read from T0547.t04.many.frag # found chain 1l1lA in training set T0547 551 :IEAQSILDT 1l1lA 693 :IDKETYEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79185 # 1uylA.551.94 read from T0547.t04.many.frag # found chain 1uylA in training set T0547 551 :IEAQSILDT 1uylA 95 :GIGMTKADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79186 # 1q9jA.551.393 read from T0547.t04.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)S555 (1q9jA)E398 because L (left) conformation "forbidden" or filtered. T0547 551 :IEAQ 1q9jA 394 :GHIA T0547 556 :ILDT 1q9jA 399 :PGKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=79188 # 1ta8A.551.234 read from T0547.t04.many.frag # found chain 1ta8A in training set T0547 551 :IEAQSILDT 1ta8A 235 :MKAKTQFEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79189 # 1k6kA.551.34 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 551 :IEAQSILDT 1k6kA 35 :LSNPSAREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79190 # 1ooyA.552.451 read from T0547.t04.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. T0547 552 :E 1ooyA 452 :E T0547 554 :QSILDTL 1ooyA 454 :LTVDDIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=79192 # 1l3lA.552.186 read from T0547.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)A553 (1l3lA)G188 because T (delta_L) conformation "forbidden" or filtered. T0547 552 :E 1l3lA 187 :V T0547 554 :QSILDTL 1l3lA 189 :KTMEEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79194 # 1dlwA.552.59 read from T0547.t04.many.frag # found chain 1dlwA in training set T0547 552 :EAQSILDTL 1dlwA 60 :TGRNLKEVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=79195 # 1h7sA.552.218 read from T0547.t04.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)E552 (1h7sA)G219 because T (delta_L) conformation "forbidden" or filtered. T0547 553 :AQSILDTL 1h7sA 220 :SPSIKENI Number of specific fragments extracted= 1 number of extra gaps= 1 total=79196 # 2bt6A.552.24 read from T0547.t04.many.frag # found chain 2bt6A in training set T0547 552 :EAQSILDTL 2bt6A 25 :IGDSLLDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79197 # 1yc61.552.75 read from T0547.t04.many.frag # found chain 1yc61 in template set Warning: unaligning (T0547)A553 (1yc61)Q112 because E (beta_S) conformation "forbidden" or filtered. T0547 552 :E 1yc61 111 :K T0547 554 :QSILDTL 1yc61 113 :AQAEAAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=79199 # 1dmlA.552.269 read from T0547.t04.many.frag # found chain 1dmlA in template set T0547 552 :EAQSILDTL 1dmlA 270 :DDCSMRAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79200 # 1l8aA.552.829 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)Q554 (1l8aA)D832 because Y (epsilon') conformation "forbidden" or filtered. T0547 552 :EA 1l8aA 830 :RS T0547 555 :SILDTL 1l8aA 833 :SRENLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=79202 # 1ntvA.552.120 read from T0547.t04.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)Q554 (1ntvA)Q145 because Y (epsilon') conformation "forbidden" or filtered. T0547 552 :EA 1ntvA 143 :TA T0547 555 :SILDTL 1ntvA 146 :AAEPVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=79204 # 1o65A.552.178 read from T0547.t04.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)E552 (1o65A)S177 because Y (epsilon') conformation "forbidden" or filtered. T0547 553 :AQSILDTL 1o65A 178 :DVTVQEAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=79205 # 1j5uA.552.27 read from T0547.t04.many.frag # found chain 1j5uA in template set Warning: unaligning (T0547)A553 (1j5uA)G23 because Y (epsilon') conformation "forbidden" or filtered. T0547 552 :E 1j5uA 22 :S T0547 554 :QSILDTL 1j5uA 24 :NSYEELL Number of specific fragments extracted= 2 number of extra gaps= 1 total=79207 # 1b4fA.552.9 read from T0547.t04.many.frag # found chain 1b4fA in template set Warning: unaligning (T0547)A553 (1b4fA)F11 because Y (epsilon') conformation "forbidden" or filtered. T0547 552 :E 1b4fA 10 :S T0547 554 :QSILDTL 1b4fA 12 :NTVDEWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=79209 # 1q2lA.552.797 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 552 :EAQSILDTL 1q2lA 821 :NDKQPSFLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=79210 # 1tv9A.552.311 read from T0547.t04.many.frag # found chain 1tv9A in template set T0547 552 :EAQSILDTL 1tv9A 312 :PVDSEKDIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79211 # 2a6aA.552.150 read from T0547.t04.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)E552 (2a6aA)S139 because P (beta_P) conformation "forbidden" or filtered. T0547 553 :AQSILDTL 2a6aA 140 :DEELEEIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=79212 # 1dljA.552.275 read from T0547.t04.many.frag # found chain 1dljA in training set Warning: unaligning (T0547)E552 (1dljA)P276 because P (beta_P) conformation "forbidden" or filtered. T0547 553 :AQSILDTL 1dljA 277 :QTLIEAIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=79213 # 1a7j.552.263 read from T0547.t04.many.frag # found chain 1a7j in template set T0547 552 :EAQSILDTL 1a7j 264 :PGNKLDLAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=79214 # 1c1yB.552.19 read from T0547.t04.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)A553 (1c1yB)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 552 :E 1c1yB 74 :N T0547 554 :QSILDTL 1c1yB 76 :MSLHDCL Number of specific fragments extracted= 2 number of extra gaps= 1 total=79216 # 2a8eA.552.105 read from T0547.t04.many.frag # found chain 2a8eA in template set T0547 552 :EAQSILDTL 2a8eA 106 :ESPIKEEYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79217 # 2c43A.552.146 read from T0547.t04.many.frag # found chain 2c43A in template set Warning: unaligning (T0547)A553 (2c43A)R148 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (2c43A)G149 because S (epsilon) conformation "forbidden" or filtered. T0547 552 :E 2c43A 147 :G T0547 555 :SILDTL 2c43A 150 :SIPEFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=79219 # 2b61A.552.299 read from T0547.t04.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)E552 (2b61A)G281 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (2b61A)Y282 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (2b61A)N284 because Y (epsilon') conformation "forbidden" or filtered. T0547 554 :Q 2b61A 283 :E T0547 556 :ILDTL 2b61A 285 :VKEAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=79221 # 1xkrA.552.190 read from T0547.t04.many.frag # found chain 1xkrA in training set T0547 552 :EAQSILDTL 1xkrA 190 :KPGYLVKIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79222 # 1d8hA.552.259 read from T0547.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)Q554 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)A501 Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 552 :EA 1d8hA 498 :NT T0547 558 :DTL 1d8hA 504 :NAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=79224 # 2ab5A.552.219 read from T0547.t04.many.frag # found chain 2ab5A in template set T0547 552 :EAQSILDTL 2ab5A 468 :SINDIKNVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79225 # 1xewX.552.121 read from T0547.t04.many.frag # found chain 1xewX in template set T0547 552 :EAQSILDTL 1xewX 122 :TRSEILDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79226 # 2fa1A.552.69 read from T0547.t04.many.frag # found chain 2fa1A in training set T0547 552 :EAQSILDTL 2fa1A 151 :ADLTLWPTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79227 # 1jbwA.552.386 read from T0547.t04.many.frag # found chain 1jbwA in template set T0547 552 :EAQSILDTL 1jbwA 387 :LKDSWQEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79228 # 1ta8A.552.235 read from T0547.t04.many.frag # found chain 1ta8A in training set T0547 552 :EAQSILDTL 1ta8A 236 :KAKTQFEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79229 # 1s3sG.552.70 read from T0547.t04.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)Q554 (1s3sG)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 552 :EA 1s3sG 314 :HS T0547 555 :SILDTL 1s3sG 317 :RISDIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=79231 # 1k6kA.552.35 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 552 :EAQSILDTL 1k6kA 36 :SNPSAREAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79232 # 1l3lA.553.187 read from T0547.t04.many.frag # found chain 1l3lA in training set T0547 553 :AQSILDTLE 1l3lA 188 :GKTMEEIAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79233 # 1dmlA.553.270 read from T0547.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)Q554 (1dmlA)C272 because L (left) conformation "forbidden" or filtered. T0547 553 :A 1dmlA 271 :D T0547 555 :SILDTLE 1dmlA 273 :SMRAVLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=79235 # 1dlwA.553.60 read from T0547.t04.many.frag # found chain 1dlwA in training set Warning: unaligning (T0547)A553 (1dlwA)G61 because P (beta_P) conformation "forbidden" or filtered. T0547 554 :QSILDTLE 1dlwA 62 :RNLKEVHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=79236 # 1l8aA.553.830 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)Q554 (1l8aA)D832 because Y (epsilon') conformation "forbidden" or filtered. T0547 553 :A 1l8aA 831 :S T0547 555 :SILDTLE 1l8aA 833 :SRENLRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=79238 # 1h7sA.553.219 read from T0547.t04.many.frag # found chain 1h7sA in template set T0547 553 :AQSILDTLE 1h7sA 220 :SPSIKENIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79239 # 1tv9A.553.312 read from T0547.t04.many.frag # found chain 1tv9A in template set Warning: unaligning (T0547)A553 (1tv9A)V313 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1tv9A)S315 because Y (epsilon') conformation "forbidden" or filtered. T0547 554 :Q 1tv9A 314 :D T0547 556 :ILDTLE 1tv9A 316 :EKDIFD Number of specific fragments extracted= 2 number of extra gaps= 2 total=79241 # 2a8eA.553.106 read from T0547.t04.many.frag # found chain 2a8eA in template set T0547 553 :AQSILDTLE 2a8eA 107 :SPIKEEYGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79242 # 1k6kA.553.36 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 553 :AQSILDTLE 1k6kA 37 :NPSAREALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79243 # 2b61A.553.300 read from T0547.t04.many.frag # found chain 2b61A in training set T0547 553 :AQSILDTLE 2b61A 282 :YENVKEALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79244 # 1dljA.553.276 read from T0547.t04.many.frag # found chain 1dljA in training set Warning: unaligning (T0547)A553 (1dljA)Q277 because Y (epsilon') conformation "forbidden" or filtered. T0547 554 :QSILDTLE 1dljA 278 :TLIEAIVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=79245 # 1xewX.553.122 read from T0547.t04.many.frag # found chain 1xewX in template set T0547 553 :AQSILDTLE 1xewX 123 :RSEILDILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79246 # 2bt6A.553.25 read from T0547.t04.many.frag # found chain 2bt6A in training set T0547 553 :AQSILDTLE 2bt6A 26 :GDSLLDVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79247 # 1d8hA.553.260 read from T0547.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)Q554 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)A501 Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 553 :A 1d8hA 499 :T T0547 558 :DTLE 1d8hA 504 :NAFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=79249 # 1yc61.553.76 read from T0547.t04.many.frag # found chain 1yc61 in template set T0547 553 :AQSILDTLE 1yc61 112 :QAQAEAAFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79250 # 2a2cA.553.284 read from T0547.t04.many.frag # found chain 2a2cA in training set T0547 553 :AQSILDTLE 2a2cA 265 :VLRLEEVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79251 # 1r9jA.553.629 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 553 :AQSILDTLE 1r9jA 628 :SAPAGVLYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79252 # 2a6aA.553.151 read from T0547.t04.many.frag # found chain 2a6aA in template set T0547 553 :AQSILDTLE 2a6aA 140 :DEELEEITK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79253 # 1b4fA.553.10 read from T0547.t04.many.frag # found chain 1b4fA in template set Warning: unaligning (T0547)A553 (1b4fA)F11 because Y (epsilon') conformation "forbidden" or filtered. T0547 554 :QSILDTLE 1b4fA 12 :NTVDEWLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=79254 # 1ooyA.553.452 read from T0547.t04.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. T0547 554 :QSILDTLE 1ooyA 454 :LTVDDIKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=79255 # 1ta8A.553.236 read from T0547.t04.many.frag # found chain 1ta8A in training set Warning: unaligning (T0547)A553 (1ta8A)A237 because P (beta_P) conformation "forbidden" or filtered. T0547 554 :QSILDTLE 1ta8A 238 :KTQFEALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=79256 # 1ntvA.553.121 read from T0547.t04.many.frag # found chain 1ntvA in training set T0547 553 :AQSILDTLE 1ntvA 144 :AQAAEPVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79257 # 1o65A.553.179 read from T0547.t04.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)Q554 (1o65A)V179 because E (beta_S) conformation "forbidden" or filtered. T0547 553 :A 1o65A 178 :D T0547 555 :SILDTLE 1o65A 180 :TVQEAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79259 # 1sw5B.553.226 read from T0547.t04.many.frag # found chain 1sw5B in template set T0547 553 :AQSILDTLE 1sw5B 227 :DEKLISVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79260 # 1i3jA.553.82 read from T0547.t04.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)A553 (1i3jA)F212 because E (beta_S) conformation "forbidden" or filtered. T0547 554 :QSILDTLE 1i3jA 213 :DCAADAAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=79261 # 1o0sA.553.386 read from T0547.t04.many.frag # found chain 1o0sA in template set T0547 553 :AQSILDTLE 1o0sA 387 :TTSILEVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79262 # 1a7j.553.264 read from T0547.t04.many.frag # found chain 1a7j in template set T0547 553 :AQSILDTLE 1a7j 265 :GNKLDLAMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79263 # 2ab5A.553.220 read from T0547.t04.many.frag # found chain 2ab5A in template set T0547 553 :AQSILDTLE 2ab5A 469 :INDIKNVVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=79264 # 1q2lA.553.798 read from T0547.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)Q554 (1q2lA)K823 because P (beta_P) conformation "forbidden" or filtered. T0547 553 :A 1q2lA 822 :D T0547 555 :SILDTLE 1q2lA 824 :QPSFLWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79266 # 1xsvA.553.40 read from T0547.t04.many.frag # found chain 1xsvA in training set T0547 553 :AQSILDTLE 1xsvA 38 :DYSLSEIAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79267 # 1y1pA.553.310 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 553 :AQSILDTLE 1y1pA 312 :TAPSLEILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79268 # 1l3lA.554.188 read from T0547.t04.many.frag # found chain 1l3lA in training set T0547 554 :QSILDTLED 1l3lA 189 :KTMEEIADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79269 # 1k6kA.554.37 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 554 :QSILDTLED 1k6kA 38 :PSAREALEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79270 # 1dmlA.554.271 read from T0547.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)Q554 (1dmlA)C272 because L (left) conformation "forbidden" or filtered. T0547 555 :SILDTLED 1dmlA 273 :SMRAVLRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=79271 # 1l8aA.554.831 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)Q554 (1l8aA)D832 because Y (epsilon') conformation "forbidden" or filtered. T0547 555 :SILDTLED 1l8aA 833 :SRENLRHH Number of specific fragments extracted= 1 number of extra gaps= 1 total=79272 # 2a8eA.554.107 read from T0547.t04.many.frag # found chain 2a8eA in template set T0547 554 :QSILDTLED 2a8eA 108 :PIKEEYGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79273 # 1r9jA.554.630 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)Q554 (1r9jA)A629 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1r9jA)P630 because P (beta_P) conformation "forbidden" or filtered. T0547 556 :ILDTLED 1r9jA 631 :AGVLYKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=79274 # 2a2cA.554.285 read from T0547.t04.many.frag # found chain 2a2cA in training set T0547 554 :QSILDTLED 2a2cA 266 :LRLEEVQAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79275 # 1tv9A.554.313 read from T0547.t04.many.frag # found chain 1tv9A in template set Warning: unaligning (T0547)S555 (1tv9A)S315 because Y (epsilon') conformation "forbidden" or filtered. T0547 554 :Q 1tv9A 314 :D T0547 556 :ILDTLED 1tv9A 316 :EKDIFDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=79277 # 1d8hA.554.261 read from T0547.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)Q554 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)A501 Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 558 :DTLED 1d8hA 504 :NAFDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=79278 # 1dlwA.554.61 read from T0547.t04.many.frag # found chain 1dlwA in training set Warning: unaligning (T0547)E561 (1dlwA)A69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D562 (1dlwA)N70 because L (left) conformation "forbidden" or filtered. T0547 554 :QSILDTL 1dlwA 62 :RNLKEVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=79279 # 1xewX.554.123 read from T0547.t04.many.frag # found chain 1xewX in template set T0547 554 :QSILDTLED 1xewX 124 :SEILDILTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79280 # 2b61A.554.301 read from T0547.t04.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)S555 (2b61A)N284 because Y (epsilon') conformation "forbidden" or filtered. T0547 554 :Q 2b61A 283 :E T0547 556 :ILDTLED 2b61A 285 :VKEALSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=79282 # 1dljA.554.277 read from T0547.t04.many.frag # found chain 1dljA in training set T0547 554 :QSILDTLED 1dljA 278 :TLIEAIVSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79283 # 1i3jA.554.83 read from T0547.t04.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)S555 (1i3jA)C214 because Y (epsilon') conformation "forbidden" or filtered. T0547 554 :Q 1i3jA 213 :D T0547 556 :ILDTLED 1i3jA 215 :AADAARH Number of specific fragments extracted= 2 number of extra gaps= 1 total=79285 # 1us5A.554.258 read from T0547.t04.many.frag # found chain 1us5A in training set T0547 554 :QSILDTLED 1us5A 259 :ETVYKFMKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79286 # 1ta8A.554.237 read from T0547.t04.many.frag # found chain 1ta8A in training set T0547 554 :QSILDTLED 1ta8A 238 :KTQFEALEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79287 # 2a6aA.554.152 read from T0547.t04.many.frag # found chain 2a6aA in template set T0547 554 :QSILDTLED 2a6aA 141 :EELEEITKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79288 # 1uylA.554.97 read from T0547.t04.many.frag # found chain 1uylA in training set Warning: unaligning (T0547)D562 (1uylA)N106 because L (left) conformation "forbidden" or filtered. T0547 554 :QSILDTLE 1uylA 98 :MTKADLIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=79289 # 1sw5B.554.227 read from T0547.t04.many.frag # found chain 1sw5B in template set T0547 554 :QSILDTLED 1sw5B 228 :EKLISVLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79290 # 1h7sA.554.220 read from T0547.t04.many.frag # found chain 1h7sA in template set T0547 554 :QSILDTLED 1h7sA 221 :PSIKENIGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79291 # 1yt3A.554.241 read from T0547.t04.many.frag # found chain 1yt3A in training set T0547 554 :QSILDTLED 1yt3A 242 :EHLWSVARY Number of specific fragments extracted= 1 number of extra gaps= 0 total=79292 # 1ooyA.554.453 read from T0547.t04.many.frag # found chain 1ooyA in training set T0547 554 :QSILDTLED 1ooyA 454 :LTVDDIKKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79293 # 1y1pA.554.311 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 554 :QSILDTLED 1y1pA 313 :APSLEILKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79294 # 1xsvA.554.41 read from T0547.t04.many.frag # found chain 1xsvA in training set T0547 554 :QSILDTLED 1xsvA 39 :YSLSEIADT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79295 # 2ab5A.554.221 read from T0547.t04.many.frag # found chain 2ab5A in template set T0547 554 :QSILDTLED 2ab5A 470 :NDIKNVVMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79296 # 2ao9A.554.48 read from T0547.t04.many.frag # found chain 2ao9A in template set T0547 554 :QSILDTLED 2ao9A 49 :RTQDEMANE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79297 # 1qgiA.554.183 read from T0547.t04.many.frag # found chain 1qgiA in training set T0547 554 :QSILDTLED 1qgiA 184 :DTLQGLLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79298 # 1b4fA.554.11 read from T0547.t04.many.frag # found chain 1b4fA in template set T0547 554 :QSILDTLED 1b4fA 12 :NTVDEWLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79299 # 1q2lA.554.799 read from T0547.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)Q554 (1q2lA)K823 because P (beta_P) conformation "forbidden" or filtered. T0547 555 :SILDTLED 1q2lA 824 :QPSFLWER Number of specific fragments extracted= 1 number of extra gaps= 1 total=79300 # 2bnxA.554.216 read from T0547.t04.many.frag # found chain 2bnxA in template set T0547 554 :QSILDTLED 2bnxA 347 :EDMKVQLCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79301 # 1k6kA.555.38 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 555 :SILDTLEDL 1k6kA 39 :SAREALEAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=79302 # 1dmlA.555.272 read from T0547.t04.many.frag # found chain 1dmlA in template set T0547 555 :SILDTLEDL 1dmlA 273 :SMRAVLRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79303 # 1d8hA.555.262 read from T0547.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 558 :DTLEDL 1d8hA 504 :NAFDNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=79304 # 1xewX.555.124 read from T0547.t04.many.frag # found chain 1xewX in template set T0547 555 :SILDTLEDL 1xewX 125 :EILDILTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79305 # 1l3lA.555.189 read from T0547.t04.many.frag # found chain 1l3lA in training set T0547 555 :SILDTLEDL 1l3lA 190 :TMEEIADVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79306 # 1sw5B.555.228 read from T0547.t04.many.frag # found chain 1sw5B in template set T0547 555 :SILDTLEDL 1sw5B 229 :KLISVLKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79307 # 2a8eA.555.108 read from T0547.t04.many.frag # found chain 2a8eA in template set T0547 555 :SILDTLEDL 2a8eA 109 :IKEEYGKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79308 # 1l8aA.555.832 read from T0547.t04.many.frag # found chain 1l8aA in template set T0547 555 :SILDTLEDL 1l8aA 833 :SRENLRHHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79309 # 2b61A.555.302 read from T0547.t04.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)S555 (2b61A)N284 because Y (epsilon') conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 2b61A 285 :VKEALSRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=79310 # 1r9jA.555.631 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 555 :SILDTLEDL 1r9jA 630 :PAGVLYKKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79311 # 1us5A.555.259 read from T0547.t04.many.frag # found chain 1us5A in training set T0547 555 :SILDTLEDL 1us5A 260 :TVYKFMKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79312 # 1y1pA.555.312 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 555 :SILDTLEDL 1y1pA 314 :PSLEILKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79313 # 2a2cA.555.286 read from T0547.t04.many.frag # found chain 2a2cA in training set T0547 555 :SILDTLEDL 2a2cA 267 :RLEEVQAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79314 # 1dljA.555.278 read from T0547.t04.many.frag # found chain 1dljA in training set T0547 555 :SILDTLEDL 1dljA 279 :LIEAIVSSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=79315 # 1ta8A.555.238 read from T0547.t04.many.frag # found chain 1ta8A in training set T0547 555 :SILDTLEDL 1ta8A 239 :TQFEALEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79316 # 1dlwA.555.62 read from T0547.t04.many.frag # found chain 1dlwA in training set Warning: unaligning (T0547)D562 (1dlwA)N70 because L (left) conformation "forbidden" or filtered. T0547 555 :SILDTLE 1dlwA 63 :NLKEVHA T0547 563 :L 1dlwA 71 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=79318 # 1i3jA.555.84 read from T0547.t04.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)S555 (1i3jA)C214 because Y (epsilon') conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1i3jA 215 :AADAARHF Number of specific fragments extracted= 1 number of extra gaps= 1 total=79319 # 1tv9A.555.314 read from T0547.t04.many.frag # found chain 1tv9A in template set T0547 555 :SILDTLEDL 1tv9A 315 :SEKDIFDYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79320 # 1qgiA.555.184 read from T0547.t04.many.frag # found chain 1qgiA in training set T0547 555 :SILDTLEDL 1qgiA 185 :TLQGLLARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79321 # 2bnxA.555.217 read from T0547.t04.many.frag # found chain 2bnxA in template set T0547 555 :SILDTLEDL 2bnxA 348 :DMKVQLCVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79322 # 1uylA.555.98 read from T0547.t04.many.frag # found chain 1uylA in training set Warning: unaligning (T0547)L563 (1uylA)L107 because L (left) conformation "forbidden" or filtered. T0547 555 :SILDTLED 1uylA 99 :TKADLINN Number of specific fragments extracted= 1 number of extra gaps= 1 total=79323 # 2ao9A.555.49 read from T0547.t04.many.frag # found chain 2ao9A in template set T0547 555 :SILDTLEDL 2ao9A 50 :TQDEMANEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79324 # 1yt3A.555.242 read from T0547.t04.many.frag # found chain 1yt3A in training set T0547 555 :SILDTLEDL 1yt3A 243 :HLWSVARYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=79325 # 1u8vA.555.324 read from T0547.t04.many.frag # found chain 1u8vA in training set T0547 555 :SILDTLEDL 1u8vA 325 :HVKDKLIEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=79326 # 1xsvA.555.42 read from T0547.t04.many.frag # found chain 1xsvA in training set T0547 555 :SILDTLEDL 1xsvA 40 :SLSEIADTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79327 # 1ik9A.555.50 read from T0547.t04.many.frag # found chain 1ik9A in template set T0547 555 :SILDTLEDL 1ik9A 51 :EISQEADDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=79328 # 1guxA.555.141 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)S555 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1guxA)F514 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1guxA)F514 Warning: unaligning (T0547)L557 because of BadResidue code BAD_PEPTIDE at template residue (1guxA)P515 T0547 558 :DTLEDL 1guxA 516 :WILNVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79329 # 1rylA.555.91 read from T0547.t04.many.frag # found chain 1rylA in training set T0547 555 :SILDTLEDL 1rylA 92 :ELAATIDRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79330 # 1q2lA.555.800 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 555 :SILDTLEDL 1q2lA 824 :QPSFLWERY Number of specific fragments extracted= 1 number of extra gaps= 0 total=79331 # 1b4fA.555.12 read from T0547.t04.many.frag # found chain 1b4fA in template set T0547 555 :SILDTLEDL 1b4fA 13 :TVDEWLEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79332 # 1k6kA.556.39 read from T0547.t04.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)S48 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1k6kA 40 :AREALEAC Number of specific fragments extracted= 1 number of extra gaps= 1 total=79333 # 1dmlA.556.273 read from T0547.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)D564 (1dmlA)Q282 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1dmlA 274 :MRAVLRRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=79334 # 1r9jA.556.632 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)D564 (1r9jA)G639 because T (delta_L) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1r9jA 631 :AGVLYKKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=79335 # 2a8eA.556.109 read from T0547.t04.many.frag # found chain 2a8eA in template set T0547 556 :ILDTLEDLD 2a8eA 110 :KEEYGKLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79336 # 1l3lA.556.190 read from T0547.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D564 (1l3lA)G199 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1l3lA 191 :MEEIADVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=79337 # 1dljA.556.279 read from T0547.t04.many.frag # found chain 1dljA in training set T0547 556 :ILDTLEDLD 1dljA 280 :IEAIVSSNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=79338 # 1us5A.556.260 read from T0547.t04.many.frag # found chain 1us5A in training set T0547 556 :ILDTLEDLD 1us5A 261 :VYKFMKAVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79339 # 1sw5B.556.229 read from T0547.t04.many.frag # found chain 1sw5B in template set T0547 556 :ILDTLEDLD 1sw5B 230 :LISVLKLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79340 # 2a2cA.556.287 read from T0547.t04.many.frag # found chain 2a2cA in training set T0547 556 :ILDTLEDLD 2a2cA 268 :LEEVQAKLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79341 # 1d8hA.556.263 read from T0547.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 558 :DTLEDLD 1d8hA 504 :NAFDNIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=79342 # 1l8aA.556.833 read from T0547.t04.many.frag # found chain 1l8aA in template set T0547 556 :ILDTLEDLD 1l8aA 834 :RENLRHHFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79343 # 1y1pA.556.313 read from T0547.t04.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)D564 (1y1pA)G323 because T (delta_L) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1y1pA 315 :SLEILKSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=79344 # 1guxA.556.142 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1guxA)F514 Warning: unaligning (T0547)L557 because of BadResidue code BAD_PEPTIDE at template residue (1guxA)P515 T0547 558 :DTLEDLD 1guxA 516 :WILNVLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=79345 # 1xewX.556.125 read from T0547.t04.many.frag # found chain 1xewX in template set Warning: unaligning (T0547)D564 (1xewX)M134 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1xewX 126 :ILDILTAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=79346 # 2bnxA.556.218 read from T0547.t04.many.frag # found chain 2bnxA in template set T0547 556 :ILDTLEDLD 2bnxA 349 :MKVQLCVFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79347 # 2b61A.556.303 read from T0547.t04.many.frag # found chain 2b61A in training set T0547 556 :ILDTLEDLD 2b61A 285 :VKEALSRIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79348 # 1u8bA.556.95 read from T0547.t04.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 T0547 556 :ILDTLEDL 1u8bA 102 :LEALADQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79349 # 1i3jA.556.85 read from T0547.t04.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)D564 (1i3jA)K223 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1i3jA 215 :AADAARHF Number of specific fragments extracted= 1 number of extra gaps= 1 total=79350 # 2ao9A.556.50 read from T0547.t04.many.frag # found chain 2ao9A in template set T0547 556 :ILDTLEDLD 2ao9A 51 :QDEMANELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79351 # 1ik9A.556.51 read from T0547.t04.many.frag # found chain 1ik9A in template set Warning: unaligning (T0547)D564 (1ik9A)A60 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1ik9A 52 :ISQEADDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=79352 # 1r9lA.556.250 read from T0547.t04.many.frag # found chain 1r9lA in training set T0547 556 :ILDTLEDLD 1r9lA 251 :AAKLFAIMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79353 # 1whzA.556.52 read from T0547.t04.many.frag # found chain 1whzA in training set Warning: unaligning (T0547)D564 (1whzA)G61 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1whzA 53 :FKRILRDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=79354 # 1tv9A.556.315 read from T0547.t04.many.frag # found chain 1tv9A in template set Warning: unaligning (T0547)D564 (1tv9A)Q324 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1tv9A 316 :EKDIFDYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=79355 # 1or7A.556.158 read from T0547.t04.many.frag # found chain 1or7A in template set Warning: unaligning (T0547)D564 (1or7A)D164 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1or7A 156 :YEEIAAIM Number of specific fragments extracted= 1 number of extra gaps= 1 total=79356 # 1dlwA.556.63 read from T0547.t04.many.frag # found chain 1dlwA in training set Warning: unaligning (T0547)D562 (1dlwA)N70 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D564 (1dlwA)G72 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLE 1dlwA 64 :LKEVHA T0547 563 :L 1dlwA 71 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=79358 # 1tr8A.556.68 read from T0547.t04.many.frag # found chain 1tr8A in template set Warning: unaligning (T0547)D564 (1tr8A)G92 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1tr8A 84 :IELVMNQT Number of specific fragments extracted= 1 number of extra gaps= 1 total=79359 # 1xsvA.556.43 read from T0547.t04.many.frag # found chain 1xsvA in training set T0547 556 :ILDTLEDLD 1xsvA 41 :LSEIADTFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=79360 # 1k3rA.556.173 read from T0547.t04.many.frag # found chain 1k3rA in template set Warning: unaligning (T0547)D564 (1k3rA)G182 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1k3rA 174 :LAESLKTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=79361 # 1p4xA.556.176 read from T0547.t04.many.frag # found chain 1p4xA in template set T0547 556 :ILDTLEDLD 1p4xA 177 :LKDLIETIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=79362 # 1q2lA.556.801 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 556 :ILDTLEDLD 1q2lA 825 :PSFLWERYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79363 # 1k6kA.557.40 read from T0547.t04.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)S48 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1k6kA 41 :REALEAC T0547 565 :Y 1k6kA 49 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=79365 # 1r9jA.557.633 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 557 :LDTLEDLDY 1r9jA 632 :GVLYKKFGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79366 # 1dmlA.557.274 read from T0547.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)D564 (1dmlA)Q282 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1dmlA 275 :RAVLRRL T0547 565 :Y 1dmlA 283 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=79368 # 1guxA.557.143 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)L557 because of BadResidue code BAD_PEPTIDE at template residue (1guxA)P515 Warning: unaligning (T0547)D564 (1guxA)N522 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1guxA 516 :WILNVL T0547 565 :Y 1guxA 523 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=79370 # 1d8hA.557.264 read from T0547.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 558 :DTLEDLDY 1d8hA 504 :NAFDNITN Number of specific fragments extracted= 1 number of extra gaps= 1 total=79371 # 2ao9A.557.51 read from T0547.t04.many.frag # found chain 2ao9A in template set Warning: unaligning (T0547)D564 (2ao9A)G59 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 2ao9A 52 :DEMANEL T0547 565 :Y 2ao9A 60 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=79373 # 1i3jA.557.86 read from T0547.t04.many.frag # found chain 1i3jA in template set T0547 557 :LDTLEDLDY 1i3jA 216 :ADAARHFKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79374 # 2bnxA.557.219 read from T0547.t04.many.frag # found chain 2bnxA in template set T0547 557 :LDTLEDLDY 2bnxA 350 :KVQLCVFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79375 # 1l8aA.557.834 read from T0547.t04.many.frag # found chain 1l8aA in template set T0547 557 :LDTLEDLDY 1l8aA 835 :ENLRHHFEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79376 # 2a2cA.557.288 read from T0547.t04.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)D564 (2a2cA)G276 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 2a2cA 269 :EEVQAKL T0547 565 :Y 2a2cA 277 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=79378 # 1ik9A.557.52 read from T0547.t04.many.frag # found chain 1ik9A in template set T0547 557 :LDTLEDLDY 1ik9A 53 :SQEADDMAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=79379 # 1r9lA.557.251 read from T0547.t04.many.frag # found chain 1r9lA in training set T0547 557 :LDTLEDLDY 1r9lA 252 :AKLFAIMQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79380 # 1whzA.557.53 read from T0547.t04.many.frag # found chain 1whzA in training set Warning: unaligning (T0547)D564 (1whzA)G61 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1whzA 54 :KRILRDA T0547 565 :Y 1whzA 62 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=79382 # 1u8bA.557.96 read from T0547.t04.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 T0547 557 :LDTLEDL 1u8bA 103 :EALADQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79383 # 1us5A.557.261 read from T0547.t04.many.frag # found chain 1us5A in training set T0547 557 :LDTLEDLDY 1us5A 262 :YKFMKAVFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79384 # 2a8eA.557.110 read from T0547.t04.many.frag # found chain 2a8eA in template set T0547 557 :LDTLEDLDY 2a8eA 111 :EEYGKLLEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79385 # 1dljA.557.280 read from T0547.t04.many.frag # found chain 1dljA in training set T0547 557 :LDTLEDLDY 1dljA 281 :EAIVSSNNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79386 # 1l3lA.557.191 read from T0547.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D564 (1l3lA)G199 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1l3lA 192 :EEIADVE T0547 565 :Y 1l3lA 200 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=79388 # 1y1pA.557.314 read from T0547.t04.many.frag # found chain 1y1pA in training set T0547 557 :LDTLEDLDY 1y1pA 316 :LEILKSLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79389 # 2b61A.557.304 read from T0547.t04.many.frag # found chain 2b61A in training set T0547 557 :LDTLEDLDY 2b61A 286 :KEALSRIKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79390 # 1p4xA.557.177 read from T0547.t04.many.frag # found chain 1p4xA in template set T0547 557 :LDTLEDLDY 1p4xA 178 :KDLIETIHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=79391 # 1oksA.557.7 read from T0547.t04.many.frag # found chain 1oksA in training set T0547 557 :LDTLEDLDY 1oksA 8 :RSIIKSSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79392 # 1u3eM.557.138 read from T0547.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1u3eM 139 :KCACEEL T0547 565 :Y 1u3eM 147 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=79394 # 1j54A.557.59 read from T0547.t04.many.frag # found chain 1j54A in template set T0547 557 :LDTLEDLDY 1j54A 60 :PEAFGVHGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79395 # 1tr8A.557.69 read from T0547.t04.many.frag # found chain 1tr8A in template set T0547 557 :LDTLEDLDY 1tr8A 85 :ELVMNQTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79396 # 1or7A.557.159 read from T0547.t04.many.frag # found chain 1or7A in template set T0547 557 :LDTLEDLDY 1or7A 157 :EEIAAIMDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=79397 # 1sw5B.557.230 read from T0547.t04.many.frag # found chain 1sw5B in template set Warning: unaligning (T0547)Y565 (1sw5B)D239 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDLD 1sw5B 231 :ISVLKLLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=79398 # 1xsvA.557.44 read from T0547.t04.many.frag # found chain 1xsvA in training set T0547 557 :LDTLEDLDY 1xsvA 42 :SEIADTFNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79399 # 1k3rA.557.174 read from T0547.t04.many.frag # found chain 1k3rA in template set T0547 557 :LDTLEDLDY 1k3rA 175 :AESLKTVGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79400 # 1u8vA.557.326 read from T0547.t04.many.frag # found chain 1u8vA in training set T0547 557 :LDTLEDLDY 1u8vA 327 :KDKLIEMTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=79401 # 1k6kA.558.41 read from T0547.t04.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)S48 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1k6kA 42 :EALEAC T0547 565 :YD 1k6kA 49 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=79403 # 1r9jA.558.634 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)D564 (1r9jA)G639 because T (delta_L) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1r9jA 633 :VLYKKF T0547 565 :YD 1r9jA 640 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=79405 # 1guxA.558.144 read from T0547.t04.many.frag # found chain 1guxA in template set T0547 558 :DTLEDLDYD 1guxA 516 :WILNVLNLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79406 # 2ao9A.558.52 read from T0547.t04.many.frag # found chain 2ao9A in template set T0547 558 :DTLEDLDYD 2ao9A 53 :EMANELGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=79407 # 1u8bA.558.97 read from T0547.t04.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 558 :DTLEDL 1u8bA 104 :ALADQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79408 # 2a2cA.558.289 read from T0547.t04.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)D564 (2a2cA)G276 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 2a2cA 270 :EVQAKL T0547 565 :YD 2a2cA 277 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=79410 # 1r9lA.558.252 read from T0547.t04.many.frag # found chain 1r9lA in training set Warning: unaligning (T0547)D566 (1r9lA)P261 because P (beta_P) conformation "forbidden" or filtered. T0547 558 :DTLEDLDY 1r9lA 253 :KLFAIMQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=79411 # 1i3jA.558.87 read from T0547.t04.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)D564 (1i3jA)K223 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1i3jA)S225 because P (beta_P) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1i3jA 217 :DAARHF T0547 565 :Y 1i3jA 224 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=79413 # 1ik9A.558.53 read from T0547.t04.many.frag # found chain 1ik9A in template set Warning: unaligning (T0547)D564 (1ik9A)A60 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1ik9A 54 :QEADDM T0547 565 :YD 1ik9A 61 :ME Number of specific fragments extracted= 2 number of extra gaps= 1 total=79415 # 1or7A.558.160 read from T0547.t04.many.frag # found chain 1or7A in template set T0547 558 :DTLEDLDYD 1or7A 158 :EIAAIMDCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=79416 # 1j54A.558.60 read from T0547.t04.many.frag # found chain 1j54A in template set Warning: unaligning (T0547)D564 (1j54A)G67 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1j54A 61 :EAFGVH T0547 565 :YD 1j54A 68 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79418 # 1u3eM.558.139 read from T0547.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1u3eM)T148 because E (beta_S) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1u3eM 140 :CACEEL T0547 565 :Y 1u3eM 147 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=79420 # 1dmlA.558.275 read from T0547.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)D564 (1dmlA)Q282 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1dmlA 276 :AVLRRL T0547 565 :YD 1dmlA 283 :VG Number of specific fragments extracted= 2 number of extra gaps= 1 total=79422 # 1whzA.558.54 read from T0547.t04.many.frag # found chain 1whzA in training set T0547 558 :DTLEDLDYD 1whzA 55 :RILRDAGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79423 # 1us5A.558.262 read from T0547.t04.many.frag # found chain 1us5A in training set T0547 558 :DTLEDLDYD 1us5A 263 :KFMKAVFGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=79424 # 1l8aA.558.835 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)D564 (1l8aA)E842 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1l8aA 836 :NLRHHF T0547 565 :YD 1l8aA 843 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=79426 # 2bnxA.558.220 read from T0547.t04.many.frag # found chain 2bnxA in template set T0547 558 :DTLEDLDYD 2bnxA 351 :VQLCVFDEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79427 # 1l3lA.558.192 read from T0547.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D564 (1l3lA)G199 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1l3lA 193 :EIADVE T0547 565 :YD 1l3lA 200 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=79429 # 1xsvA.558.45 read from T0547.t04.many.frag # found chain 1xsvA in training set Warning: unaligning (T0547)D564 (1xsvA)N49 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1xsvA 43 :EIADTF T0547 565 :YD 1xsvA 50 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=79431 # 2auwA.558.107 read from T0547.t04.many.frag # found chain 2auwA in template set Warning: unaligning (T0547)D564 (2auwA)G112 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 2auwA 106 :TAAEAL T0547 565 :YD 2auwA 113 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=79433 # 2a8eA.558.111 read from T0547.t04.many.frag # found chain 2a8eA in template set T0547 558 :DTLEDLDYD 2a8eA 112 :EYGKLLEVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=79434 # 1d8hA.558.265 read from T0547.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)D566 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)S513 T0547 558 :DTLEDLDY 1d8hA 504 :NAFDNITN Number of specific fragments extracted= 1 number of extra gaps= 1 total=79435 # 1fipA.558.75 read from T0547.t04.many.frag # found chain 1fipA in template set Warning: unaligning (T0547)D564 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1fipA 76 :RAALMM T0547 565 :YD 1fipA 83 :IN Number of specific fragments extracted= 2 number of extra gaps= 1 total=79437 # 1ew0A.558.43 read from T0547.t04.many.frag # found chain 1ew0A in training set Warning: unaligning (T0547)D564 (1ew0A)G171 because T (delta_L) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1ew0A 165 :AAVRQF T0547 565 :YD 1ew0A 172 :YA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79439 # 1p4xA.558.178 read from T0547.t04.many.frag # found chain 1p4xA in template set Warning: unaligning (T0547)D566 (1p4xA)K187 because P (beta_P) conformation "forbidden" or filtered. T0547 558 :DTLEDLDY 1p4xA 179 :DLIETIHH Number of specific fragments extracted= 1 number of extra gaps= 1 total=79440 # 1dljA.558.281 read from T0547.t04.many.frag # found chain 1dljA in training set T0547 558 :DTLEDLDYD 1dljA 282 :AIVSSNNVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79441 # 1y1pA.558.315 read from T0547.t04.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)D564 (1y1pA)G323 because T (delta_L) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1y1pA 317 :EILKSL T0547 565 :YD 1y1pA 324 :RP Number of specific fragments extracted= 2 number of extra gaps= 1 total=79443 2a6cA expands to /projects/compbio/data/pdb/2a6c.pdb.gz 2a6cA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 94, because occupancy 0.500 <= existing 0.500 in 2a6cA Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 2a6cA Skipped atom 98, because occupancy 0.500 <= existing 0.500 in 2a6cA Skipped atom 100, because occupancy 0.500 <= existing 0.500 in 2a6cA Skipped atom 102, because occupancy 0.500 <= existing 0.500 in 2a6cA Skipped atom 104, because occupancy 0.500 <= existing 0.500 in 2a6cA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2a6cA.558.35 read from T0547.t04.many.frag # adding 2a6cA to template set # found chain 2a6cA in template set Warning: unaligning (T0547)D564 (2a6cA)G30 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 2a6cA 24 :KAAELL T0547 565 :YD 2a6cA 31 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=79445 # 1oaiA.558.26 read from T0547.t04.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1oaiA 587 :KCLQDN T0547 566 :D 1oaiA 595 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=79447 # 1zkeA.558.22 read from T0547.t04.many.frag # found chain 1zkeA in training set Warning: unaligning (T0547)D564 (1zkeA)N27 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1zkeA 21 :MLLKLA T0547 565 :YD 1zkeA 28 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=79449 # 1r9lA.559.253 read from T0547.t04.many.frag # found chain 1r9lA in training set Warning: unaligning (T0547)D566 (1r9lA)P261 because P (beta_P) conformation "forbidden" or filtered. T0547 559 :TLEDLDY 1r9lA 254 :LFAIMQL T0547 567 :I 1r9lA 262 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=79451 # 2a2cA.559.290 read from T0547.t04.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)D564 (2a2cA)G276 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (2a2cA)S278 because P (beta_P) conformation "forbidden" or filtered. T0547 559 :TLEDL 2a2cA 271 :VQAKL T0547 565 :Y 2a2cA 277 :I T0547 567 :I 2a2cA 279 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=79454 # 2ao9A.559.53 read from T0547.t04.many.frag # found chain 2ao9A in template set Warning: unaligning (T0547)D564 (2ao9A)G59 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 2ao9A 54 :MANEL T0547 565 :YDI 2ao9A 60 :INR Number of specific fragments extracted= 2 number of extra gaps= 1 total=79456 # 1r9jA.559.635 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)D564 (1r9jA)G639 because T (delta_L) conformation "forbidden" or filtered. T0547 559 :TLEDL 1r9jA 634 :LYKKF T0547 565 :YDI 1r9jA 640 :ITV Number of specific fragments extracted= 2 number of extra gaps= 1 total=79458 # 1k6kA.559.42 read from T0547.t04.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)S48 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1k6kA 43 :ALEAC T0547 565 :YDI 1k6kA 49 :VDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=79460 # 1guxA.559.145 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)D564 (1guxA)N522 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1guxA 517 :ILNVL T0547 565 :YDI 1guxA 523 :LKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79462 # 1u8bA.559.98 read from T0547.t04.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 559 :TLEDL 1u8bA 105 :LADQV T0547 567 :I 1u8bA 113 :P Number of specific fragments extracted= 2 number of extra gaps= 0 total=79464 # 1ew0A.559.44 read from T0547.t04.many.frag # found chain 1ew0A in training set T0547 559 :TLEDLDYDI 1ew0A 166 :AVRQFGYAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79465 # 1i3jA.559.88 read from T0547.t04.many.frag # found chain 1i3jA in template set T0547 559 :TLEDLDYDI 1i3jA 218 :AARHFKISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79466 # 1or7A.559.161 read from T0547.t04.many.frag # found chain 1or7A in template set T0547 559 :TLEDLDYDI 1or7A 159 :IAAIMDCPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79467 # 1l3lA.559.193 read from T0547.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D564 (1l3lA)G199 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1l3lA 194 :IADVE T0547 565 :YDI 1l3lA 200 :VKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=79469 # 1j54A.559.61 read from T0547.t04.many.frag # found chain 1j54A in template set T0547 559 :TLEDLDYDI 1j54A 62 :AFGVHGIAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79470 # 1fipA.559.76 read from T0547.t04.many.frag # found chain 1fipA in template set T0547 559 :TLEDLDYDI 1fipA 77 :AALMMGINR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79471 # 1u3eM.559.140 read from T0547.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1u3eM 141 :ACEEL T0547 565 :YDI 1u3eM 147 :LTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=79473 # 1xsvA.559.46 read from T0547.t04.many.frag # found chain 1xsvA in training set Warning: unaligning (T0547)D564 (1xsvA)N49 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1xsvA)S51 because P (beta_P) conformation "forbidden" or filtered. T0547 559 :TLEDL 1xsvA 44 :IADTF T0547 565 :Y 1xsvA 50 :V T0547 567 :I 1xsvA 52 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=79476 # 1ik9A.559.54 read from T0547.t04.many.frag # found chain 1ik9A in template set T0547 559 :TLEDLDYDI 1ik9A 55 :EADDMAMEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79477 # 2auwA.559.108 read from T0547.t04.many.frag # found chain 2auwA in template set Warning: unaligning (T0547)D564 (2auwA)G112 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (2auwA)S114 because P (beta_P) conformation "forbidden" or filtered. T0547 559 :TLEDL 2auwA 107 :AAEAL T0547 565 :Y 2auwA 113 :I T0547 567 :I 2auwA 115 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=79480 # 1oaiA.559.27 read from T0547.t04.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1oaiA 588 :CLQDN T0547 566 :DI 1oaiA 595 :DY Number of specific fragments extracted= 2 number of extra gaps= 1 total=79482 # 1us5A.559.263 read from T0547.t04.many.frag # found chain 1us5A in training set T0547 559 :TLEDLDYDI 1us5A 264 :FMKAVFGNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79483 # 2a6cA.559.36 read from T0547.t04.many.frag # found chain 2a6cA in template set Warning: unaligning (T0547)D564 (2a6cA)G30 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 2a6cA 25 :AAELL T0547 565 :YDI 2a6cA 31 :VTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=79485 # 1l8aA.559.836 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)D564 (1l8aA)E842 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1l8aA 837 :LRHHF T0547 565 :YDI 1l8aA 843 :VDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79487 # 1p4xA.559.179 read from T0547.t04.many.frag # found chain 1p4xA in template set T0547 559 :TLEDLDYDI 1p4xA 180 :LIETIHHKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=79488 # 1whzA.559.55 read from T0547.t04.many.frag # found chain 1whzA in training set T0547 559 :TLEDLDYDI 1whzA 56 :ILRDAGLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79489 # 2bnxA.559.221 read from T0547.t04.many.frag # found chain 2bnxA in template set T0547 559 :TLEDLDYDI 2bnxA 352 :QLCVFDEQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79490 # 1msk.559.306 read from T0547.t04.many.frag # found chain 1msk in template set Warning: unaligning (T0547)D564 (1msk)G1208 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1msk 1203 :YARRK T0547 565 :YDI 1msk 1209 :MSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=79492 # 1zkeA.559.23 read from T0547.t04.many.frag # found chain 1zkeA in training set Warning: unaligning (T0547)D564 (1zkeA)N27 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1zkeA 22 :LLKLA T0547 565 :YDI 1zkeA 28 :LSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=79494 # 2a8eA.559.112 read from T0547.t04.many.frag # found chain 2a8eA in template set T0547 559 :TLEDLDYDI 2a8eA 113 :YGKLLEVNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79495 # 1u9lA.559.7 read from T0547.t04.many.frag # found chain 1u9lA in template set Warning: unaligning (T0547)D564 (1u9lA)D364 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1u9lA 359 :FTKYL T0547 565 :YDI 1u9lA 365 :IDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79497 # 1fc3A.559.53 read from T0547.t04.many.frag # found chain 1fc3A in template set Warning: unaligning (T0547)Y565 (1fc3A)T199 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1fc3A)T200 because E (beta_S) conformation "forbidden" or filtered. T0547 559 :TLEDLD 1fc3A 193 :IAKKYN T0547 567 :I 1fc3A 201 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=79499 # 1w0hA.559.67 read from T0547.t04.many.frag # found chain 1w0hA in training set Warning: unaligning (T0547)D564 (1w0hA)G191 because T (delta_L) conformation "forbidden" or filtered. T0547 559 :TLEDL 1w0hA 186 :CISLT T0547 565 :YDI 1w0hA 192 :ITQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=79501 # 2a2cA.560.291 read from T0547.t04.many.frag # found chain 2a2cA in training set T0547 560 :LEDLDYDIH 2a2cA 272 :QAKLGISLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79502 # 1u8bA.560.99 read from T0547.t04.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 560 :LEDL 1u8bA 106 :ADQV T0547 567 :IH 1u8bA 113 :PF Number of specific fragments extracted= 2 number of extra gaps= 0 total=79504 # 1ew0A.560.45 read from T0547.t04.many.frag # found chain 1ew0A in training set T0547 560 :LEDLDYDIH 1ew0A 167 :VRQFGYAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79505 # 1r9lA.560.254 read from T0547.t04.many.frag # found chain 1r9lA in training set T0547 560 :LEDLDYDIH 1r9lA 255 :FAIMQLPVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79506 # 1k6kA.560.43 read from T0547.t04.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)S48 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1k6kA 44 :LEAC T0547 565 :YDIH 1k6kA 49 :VDLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=79508 # 2ao9A.560.54 read from T0547.t04.many.frag # found chain 2ao9A in template set Warning: unaligning (T0547)D564 (2ao9A)G59 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 2ao9A 55 :ANEL T0547 565 :YDIH 2ao9A 60 :INRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=79510 # 1or7A.560.162 read from T0547.t04.many.frag # found chain 1or7A in template set Warning: unaligning (T0547)D564 (1or7A)D164 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1or7A 160 :AAIM T0547 565 :YDIH 1or7A 165 :CPVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=79512 # 1r9jA.560.636 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 560 :LEDLDYDIH 1r9jA 635 :YKKFGITVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79513 # 1i3jA.560.89 read from T0547.t04.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)D564 (1i3jA)K223 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1i3jA 219 :ARHF T0547 565 :YDIH 1i3jA 224 :ISSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=79515 # 1l3lA.560.194 read from T0547.t04.many.frag # found chain 1l3lA in training set T0547 560 :LEDLDYDIH 1l3lA 195 :ADVEGVKYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=79516 # 2ccyA.560.96 read from T0547.t04.many.frag # found chain 2ccyA in training set T0547 560 :LEDLDYDIH 2ccyA 97 :AAAAKAGPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79517 # 1ik9A.560.55 read from T0547.t04.many.frag # found chain 1ik9A in template set Warning: unaligning (T0547)D564 (1ik9A)A60 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1ik9A 56 :ADDM T0547 565 :YDIH 1ik9A 61 :MEKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=79519 # 1u3eM.560.141 read from T0547.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1u3eM)T148 because E (beta_S) conformation "forbidden" or filtered. T0547 560 :LEDL 1u3eM 142 :CEEL T0547 565 :Y 1u3eM 147 :L T0547 567 :IH 1u3eM 149 :RG Number of specific fragments extracted= 3 number of extra gaps= 2 total=79522 # 1fipA.560.77 read from T0547.t04.many.frag # found chain 1fipA in template set Warning: unaligning (T0547)D564 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 560 :LEDL 1fipA 78 :ALMM T0547 565 :YDIH 1fipA 83 :INRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=79524 # 1us5A.560.264 read from T0547.t04.many.frag # found chain 1us5A in training set Warning: unaligning (T0547)D566 (1us5A)N271 because N (gamma') conformation "forbidden" or filtered. T0547 560 :LEDLDY 1us5A 265 :MKAVFG T0547 567 :IH 1us5A 272 :LE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79526 # 1j54A.560.62 read from T0547.t04.many.frag # found chain 1j54A in template set Warning: unaligning (T0547)D564 (1j54A)G67 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1j54A 63 :FGVH T0547 565 :YDIH 1j54A 68 :IADE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79528 # 1oaiA.560.28 read from T0547.t04.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1oaiA)D595 because D (zeta) conformation "forbidden" or filtered. T0547 560 :LEDLD 1oaiA 589 :LQDNN T0547 567 :IH 1oaiA 596 :YT Number of specific fragments extracted= 2 number of extra gaps= 1 total=79530 # 1msk.560.307 read from T0547.t04.many.frag # found chain 1msk in template set Warning: unaligning (T0547)D564 (1msk)G1208 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1msk 1204 :ARRK T0547 565 :YDIH 1msk 1209 :MSVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=79532 # 1zkeA.560.24 read from T0547.t04.many.frag # found chain 1zkeA in training set Warning: unaligning (T0547)D564 (1zkeA)N27 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1zkeA 23 :LKLA T0547 565 :YDIH 1zkeA 28 :LSLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=79534 # 1whzA.560.56 read from T0547.t04.many.frag # found chain 1whzA in training set Warning: unaligning (T0547)D564 (1whzA)G61 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1whzA 57 :LRDA T0547 565 :YDIH 1whzA 62 :LTEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79536 # 1guxA.560.146 read from T0547.t04.many.frag # found chain 1guxA in template set T0547 560 :LEDLDYDIH 1guxA 518 :LNVLNLKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79537 # 2akaA.560.389 read from T0547.t04.many.frag # found chain 2akaA in template set T0547 560 :LEDLDYDIH 2akaA 379 :STVFGVNPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79538 # 1p4xA.560.180 read from T0547.t04.many.frag # found chain 1p4xA in template set T0547 560 :LEDLDYDIH 1p4xA 181 :IETIHHKYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=79539 # 1fc3A.560.54 read from T0547.t04.many.frag # found chain 1fc3A in template set Warning: unaligning (T0547)D564 (1fc3A)N198 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1fc3A 194 :AKKY T0547 565 :YDIH 1fc3A 199 :TTAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=79541 # 1r1tA.560.65 read from T0547.t04.many.frag # found chain 1r1tA in training set T0547 560 :LEDLDYDIH 1r1tA 66 :AQAIGVSES Number of specific fragments extracted= 1 number of extra gaps= 0 total=79542 # 1j75A.560.31 read from T0547.t04.many.frag # found chain 1j75A in template set Warning: unaligning (T0547)D564 (1j75A)Q139 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1j75A 135 :VKKC T0547 565 :YDIH 1j75A 140 :VPKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=79544 # 2bnxA.560.222 read from T0547.t04.many.frag # found chain 2bnxA in template set T0547 560 :LEDLDYDIH 2bnxA 353 :LCVFDEQGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79545 # 1zv1A.560.33 read from T0547.t04.many.frag # found chain 1zv1A in training set Warning: unaligning (T0547)Y565 (1zv1A)A39 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDLD 1zv1A 34 :LKDAD T0547 566 :DIH 1zv1A 40 :NIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79547 # 1xsvA.560.47 read from T0547.t04.many.frag # found chain 1xsvA in training set Warning: unaligning (T0547)D564 (1xsvA)N49 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1xsvA)S51 because P (beta_P) conformation "forbidden" or filtered. T0547 560 :LEDL 1xsvA 45 :ADTF T0547 565 :Y 1xsvA 50 :V T0547 567 :IH 1xsvA 52 :RQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=79550 # 1zc6A.560.188 read from T0547.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)Y565 (1zc6A)G194 because T (delta_L) conformation "forbidden" or filtered. T0547 560 :LEDLD 1zc6A 189 :LDFVG T0547 566 :DIH 1zc6A 195 :DWQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=79552 # 1k6kA.561.44 read from T0547.t04.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)S48 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1k6kA 45 :EAC T0547 565 :YDIHA 1k6kA 49 :VDLVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79554 # 1u8bA.561.100 read from T0547.t04.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 561 :EDL 1u8bA 107 :DQV T0547 567 :IHA 1u8bA 113 :PFH Number of specific fragments extracted= 2 number of extra gaps= 0 total=79556 # 2a2cA.561.292 read from T0547.t04.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)D564 (2a2cA)G276 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 2a2cA 273 :AKL T0547 565 :YDIHA 2a2cA 277 :ISLEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79558 # 1r9lA.561.255 read from T0547.t04.many.frag # found chain 1r9lA in training set T0547 561 :EDLDYDIHA 1r9lA 256 :AIMQLPVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79559 # 1oaiA.561.29 read from T0547.t04.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D566 (1oaiA)D595 because D (zeta) conformation "forbidden" or filtered. T0547 561 :EDLDY 1oaiA 590 :QDNNW T0547 567 :IHA 1oaiA 596 :YTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=79561 # 1r9jA.561.637 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)D564 (1r9jA)G639 because T (delta_L) conformation "forbidden" or filtered. T0547 561 :EDL 1r9jA 636 :KKF T0547 565 :YDIHA 1r9jA 640 :ITVEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79563 # 1ew0A.561.46 read from T0547.t04.many.frag # found chain 1ew0A in training set T0547 561 :EDLDYDIHA 1ew0A 168 :RQFGYAEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79564 # 1l3lA.561.195 read from T0547.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D566 (1l3lA)K201 because P (beta_P) conformation "forbidden" or filtered. T0547 561 :EDLDY 1l3lA 196 :DVEGV T0547 567 :IHA 1l3lA 202 :YNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=79566 # 2akaA.561.390 read from T0547.t04.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)D564 (2akaA)G383 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (2akaA)N385 because P (beta_P) conformation "forbidden" or filtered. T0547 561 :EDL 2akaA 380 :TVF T0547 565 :Y 2akaA 384 :V T0547 567 :IHA 2akaA 386 :PSV Number of specific fragments extracted= 3 number of extra gaps= 2 total=79569 # 2ao9A.561.55 read from T0547.t04.many.frag # found chain 2ao9A in template set Warning: unaligning (T0547)D564 (2ao9A)G59 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 2ao9A 56 :NEL T0547 565 :YDIHA 2ao9A 60 :INRTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=79571 # 1ik9A.561.56 read from T0547.t04.many.frag # found chain 1ik9A in template set Warning: unaligning (T0547)D564 (1ik9A)A60 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1ik9A)E62 because P (beta_P) conformation "forbidden" or filtered. T0547 561 :EDL 1ik9A 57 :DDM T0547 565 :Y 1ik9A 61 :M T0547 567 :IHA 1ik9A 63 :KGK Number of specific fragments extracted= 3 number of extra gaps= 2 total=79574 # 1u3eM.561.142 read from T0547.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1u3eM 143 :EEL T0547 565 :YDIHA 1u3eM 147 :LTRGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=79576 # 2ccyA.561.97 read from T0547.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0547)D566 (2ccyA)G103 because S (epsilon) conformation "forbidden" or filtered. T0547 561 :EDLDY 2ccyA 98 :AAAKA T0547 567 :IHA 2ccyA 104 :PDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79578 # 1fc3A.561.55 read from T0547.t04.many.frag # found chain 1fc3A in template set Warning: unaligning (T0547)D564 (1fc3A)N198 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1fc3A 195 :KKY T0547 565 :YDIHA 1fc3A 199 :TTASR Number of specific fragments extracted= 2 number of extra gaps= 1 total=79580 # 1j75A.561.32 read from T0547.t04.many.frag # found chain 1j75A in template set Warning: unaligning (T0547)D564 (1j75A)Q139 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1j75A 136 :KKC T0547 565 :YDIHA 1j75A 140 :VPKKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=79582 # 1msk.561.308 read from T0547.t04.many.frag # found chain 1msk in template set Warning: unaligning (T0547)D564 (1msk)G1208 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1msk 1205 :RRK T0547 565 :YDIHA 1msk 1209 :MSVTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79584 # 1i3jA.561.90 read from T0547.t04.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)D566 (1i3jA)S225 because P (beta_P) conformation "forbidden" or filtered. T0547 561 :EDLDY 1i3jA 220 :RHFKI T0547 567 :IHA 1i3jA 226 :SGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=79586 # 1r1tA.561.66 read from T0547.t04.many.frag # found chain 1r1tA in training set T0547 561 :EDLDYDIHA 1r1tA 67 :QAIGVSESA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79587 # 1whzA.561.57 read from T0547.t04.many.frag # found chain 1whzA in training set T0547 561 :EDLDYDIHA 1whzA 58 :RDAGLTEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79588 # 1zv1A.561.34 read from T0547.t04.many.frag # found chain 1zv1A in training set Warning: unaligning (T0547)Y565 (1zv1A)A39 because L (left) conformation "forbidden" or filtered. T0547 561 :EDLD 1zv1A 35 :KDAD T0547 566 :DIHA 1zv1A 40 :NIEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79590 # 1or7A.561.163 read from T0547.t04.many.frag # found chain 1or7A in template set T0547 561 :EDLDYDIHA 1or7A 161 :AIMDCPVGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79591 # 2b5aA.561.19 read from T0547.t04.many.frag # found chain 2b5aA in training set T0547 561 :EDLDYDIHA 2b5aA 20 :TQKGVSQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79592 # 1j54A.561.63 read from T0547.t04.many.frag # found chain 1j54A in template set Warning: unaligning (T0547)D564 (1j54A)G67 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1j54A 64 :GVH T0547 565 :YDIHA 1j54A 68 :IADEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=79594 # 1p4xA.561.181 read from T0547.t04.many.frag # found chain 1p4xA in template set Warning: unaligning (T0547)D566 (1p4xA)K187 because P (beta_P) conformation "forbidden" or filtered. T0547 561 :EDLDY 1p4xA 182 :ETIHH T0547 567 :IHA 1p4xA 188 :YPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=79596 # 2bo4A.561.264 read from T0547.t04.many.frag # found chain 2bo4A in template set T0547 561 :EDLDYDIHA 2bo4A 265 :ERVGYDVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79597 # 1zkeA.561.25 read from T0547.t04.many.frag # found chain 1zkeA in training set Warning: unaligning (T0547)D564 (1zkeA)N27 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1zkeA 24 :KLA T0547 565 :YDIHA 1zkeA 28 :LSLGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=79599 # 1fipA.561.78 read from T0547.t04.many.frag # found chain 1fipA in template set T0547 561 :EDLDYDIHA 1fipA 79 :LMMGINRGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79600 # 1ail.561.47 read from T0547.t04.many.frag # found chain 1ail in template set Warning: unaligning (T0547)D564 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1ail 48 :STL T0547 565 :YDIHA 1ail 52 :LNIEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79602 # 1xsvA.561.48 read from T0547.t04.many.frag # found chain 1xsvA in training set T0547 561 :EDLDYDIHA 1xsvA 46 :DTFNVSRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79603 # 2bnxA.561.223 read from T0547.t04.many.frag # found chain 2bnxA in template set T0547 561 :EDLDYDIHA 2bnxA 354 :CVFDEQGDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79604 # 1u8bA.562.101 read from T0547.t04.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 562 :DL 1u8bA 108 :QV T0547 567 :IHAI 1u8bA 113 :PFHL Number of specific fragments extracted= 2 number of extra gaps= 0 total=79606 # 2akaA.562.391 read from T0547.t04.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)D564 (2akaA)G383 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (2akaA)N385 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DL 2akaA 381 :VF T0547 565 :Y 2akaA 384 :V T0547 567 :IHAI 2akaA 386 :PSVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=79609 # 1k6kA.562.45 read from T0547.t04.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)S48 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1k6kA 46 :AC T0547 565 :YDIHAI 1k6kA 49 :VDLVAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=79611 # 2a2cA.562.293 read from T0547.t04.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)D564 (2a2cA)G276 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (2a2cA)S278 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DL 2a2cA 274 :KL T0547 565 :Y 2a2cA 277 :I T0547 567 :IHAI 2a2cA 279 :LEEM Number of specific fragments extracted= 3 number of extra gaps= 2 total=79614 # 1r9lA.562.256 read from T0547.t04.many.frag # found chain 1r9lA in training set T0547 562 :DLDYDIHAI 1r9lA 257 :IMQLPVADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79615 # 1oaiA.562.30 read from T0547.t04.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. T0547 562 :DLD 1oaiA 591 :DNN T0547 566 :DIHAI 1oaiA 595 :DYTRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=79617 # 1l3lA.562.196 read from T0547.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D564 (1l3lA)G199 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1l3lA 197 :VE T0547 565 :YDIHAI 1l3lA 200 :VKYNSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=79619 # 1j75A.562.33 read from T0547.t04.many.frag # found chain 1j75A in template set T0547 562 :DLDYDIHAI 1j75A 137 :KCQVPKKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79620 # 1ew0A.562.47 read from T0547.t04.many.frag # found chain 1ew0A in training set T0547 562 :DLDYDIHAI 1ew0A 169 :QFGYAEEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79621 # 1r9jA.562.638 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 562 :DLDYDIHAI 1r9jA 637 :KFGITVEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79622 # 1fc3A.562.56 read from T0547.t04.many.frag # found chain 1fc3A in template set T0547 562 :DLDYDIHAI 1fc3A 196 :KYNTTASRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79623 # 1msk.562.309 read from T0547.t04.many.frag # found chain 1msk in template set T0547 562 :DLDYDIHAI 1msk 1206 :RKGMSVTEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79624 # 1zv1A.562.35 read from T0547.t04.many.frag # found chain 1zv1A in training set Warning: unaligning (T0547)Y565 (1zv1A)A39 because L (left) conformation "forbidden" or filtered. T0547 562 :DLD 1zv1A 36 :DAD T0547 566 :DIHAI 1zv1A 40 :NIEEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79626 # 2b5aA.562.20 read from T0547.t04.many.frag # found chain 2b5aA in training set Warning: unaligning (T0547)D564 (2b5aA)G23 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (2b5aA)S25 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DL 2b5aA 21 :QK T0547 565 :Y 2b5aA 24 :V T0547 567 :IHAI 2b5aA 26 :QEEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=79629 # 1i3jA.562.91 read from T0547.t04.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)Y565 (1i3jA)I224 because Y (epsilon') conformation "forbidden" or filtered. T0547 562 :DLD 1i3jA 221 :HFK T0547 566 :DIHAI 1i3jA 225 :SSGLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=79631 # 2ccyA.562.98 read from T0547.t04.many.frag # found chain 2ccyA in training set T0547 562 :DLDYDIHAI 2ccyA 99 :AAKAGPDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79632 # 1u3eM.562.143 read from T0547.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1u3eM 144 :EL T0547 565 :YDIHAI 1u3eM 147 :LTRGKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=79634 # 1r1tA.562.67 read from T0547.t04.many.frag # found chain 1r1tA in training set Warning: unaligning (T0547)D564 (1r1tA)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 562 :DL 1r1tA 68 :AI T0547 565 :YDIHAI 1r1tA 71 :VSESAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=79636 # 1whzA.562.58 read from T0547.t04.many.frag # found chain 1whzA in training set Warning: unaligning (T0547)D564 (1whzA)G61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1whzA)T63 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DL 1whzA 59 :DA T0547 565 :Y 1whzA 62 :L T0547 567 :IHAI 1whzA 64 :EEEF Number of specific fragments extracted= 3 number of extra gaps= 2 total=79639 # 1ail.562.48 read from T0547.t04.many.frag # found chain 1ail in template set Warning: unaligning (T0547)D566 (1ail)N53 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DLDY 1ail 49 :TLGL T0547 567 :IHAI 1ail 54 :IEAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79641 # 1yvvA.562.240 read from T0547.t04.many.frag # found chain 1yvvA in template set T0547 562 :DLDYDIHAI 1yvvA 241 :NLDASREQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79642 # 2ao9A.562.56 read from T0547.t04.many.frag # found chain 2ao9A in template set Warning: unaligning (T0547)D564 (2ao9A)G59 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 2ao9A 57 :EL T0547 565 :YDIHAI 2ao9A 60 :INRTTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=79644 # 1v4vA.562.315 read from T0547.t04.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)D562 (1v4vA)L316 because P (beta_P) conformation "forbidden" or filtered. T0547 563 :LDYDIHAI 1v4vA 317 :AGTDPEGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=79645 # 1ik9A.562.57 read from T0547.t04.many.frag # found chain 1ik9A in template set T0547 562 :DLDYDIHAI 1ik9A 58 :DMAMEKGKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=79646 # 1z53A.562.249 read from T0547.t04.many.frag # found chain 1z53A in template set T0547 562 :DLDYDIHAI 1z53A 250 :EYANDQDKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79647 # 1u0jA.562.10 read from T0547.t04.many.frag # found chain 1u0jA in template set Warning: unaligning (T0547)L563 (1u0jA)G235 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D564 (1u0jA)I236 because E (beta_S) conformation "forbidden" or filtered. T0547 562 :D 1u0jA 234 :K T0547 565 :YDIHAI 1u0jA 237 :TSEKQW Number of specific fragments extracted= 2 number of extra gaps= 1 total=79649 # 1j54A.562.64 read from T0547.t04.many.frag # found chain 1j54A in template set Warning: unaligning (T0547)D564 (1j54A)G67 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1j54A 65 :VH T0547 565 :YDIHAI 1j54A 68 :IADEFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=79651 # 1x6iA.562.14 read from T0547.t04.many.frag # found chain 1x6iA in training set Warning: unaligning (T0547)D564 (1x6iA)R14 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DL 1x6iA 12 :AC T0547 565 :YDIHAI 1x6iA 15 :RGMREL Number of specific fragments extracted= 2 number of extra gaps= 1 total=79653 # 1ts9A.562.77 read from T0547.t04.many.frag # found chain 1ts9A in training set T0547 562 :DLDYDIHAI 1ts9A 78 :LINFRPEDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79654 # 2bo4A.562.265 read from T0547.t04.many.frag # found chain 2bo4A in template set T0547 562 :DLDYDIHAI 2bo4A 266 :RVGYDVEAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79655 # 1u8bA.563.102 read from T0547.t04.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 563 :L 1u8bA 109 :V T0547 567 :IHAIM 1u8bA 113 :PFHLH Number of specific fragments extracted= 2 number of extra gaps= 0 total=79657 # 1k6kA.563.46 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 563 :LDYDIHAIM 1k6kA 47 :CSVDLVALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79658 # 1fc3A.563.57 read from T0547.t04.many.frag # found chain 1fc3A in template set Warning: unaligning (T0547)D564 (1fc3A)N198 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1fc3A)T200 because E (beta_S) conformation "forbidden" or filtered. T0547 563 :L 1fc3A 197 :Y T0547 565 :Y 1fc3A 199 :T T0547 567 :IHAIM 1fc3A 201 :ASRVE Number of specific fragments extracted= 3 number of extra gaps= 2 total=79661 # 1j75A.563.34 read from T0547.t04.many.frag # found chain 1j75A in template set Warning: unaligning (T0547)D564 (1j75A)Q139 because L (left) conformation "forbidden" or filtered. T0547 563 :L 1j75A 138 :C T0547 565 :YDIHAIM 1j75A 140 :VPKKTLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=79663 # 2akaA.563.392 read from T0547.t04.many.frag # found chain 2akaA in template set T0547 563 :LDYDIHAIM 2akaA 382 :FGVNPSVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79664 # 2a2cA.563.294 read from T0547.t04.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)D564 (2a2cA)G276 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (2a2cA)S278 because P (beta_P) conformation "forbidden" or filtered. T0547 563 :L 2a2cA 275 :L T0547 565 :Y 2a2cA 277 :I T0547 567 :IHAIM 2a2cA 279 :LEEML Number of specific fragments extracted= 3 number of extra gaps= 2 total=79667 # 1zv1A.563.36 read from T0547.t04.many.frag # found chain 1zv1A in training set Warning: unaligning (T0547)D564 (1zv1A)D38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1zv1A)A39 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1zv1A)N40 because N (gamma') conformation "forbidden" or filtered. T0547 563 :L 1zv1A 37 :A T0547 567 :IHAIM 1zv1A 41 :IEEAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=79669 # 1oaiA.563.31 read from T0547.t04.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. T0547 563 :L 1oaiA 592 :N T0547 566 :DIHAIM 1oaiA 595 :DYTRSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79671 # 1r9jA.563.639 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)D564 (1r9jA)G639 because T (delta_L) conformation "forbidden" or filtered. T0547 563 :L 1r9jA 638 :F T0547 565 :YDIHAIM 1r9jA 640 :ITVEEVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=79673 # 1v4vA.563.316 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 563 :LDYDIHAIM 1v4vA 317 :AGTDPEGVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=79674 # 1msk.563.310 read from T0547.t04.many.frag # found chain 1msk in template set Warning: unaligning (T0547)D564 (1msk)G1208 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1msk)S1210 because P (beta_P) conformation "forbidden" or filtered. T0547 563 :L 1msk 1207 :K T0547 565 :Y 1msk 1209 :M T0547 567 :IHAIM 1msk 1211 :VTEVE Number of specific fragments extracted= 3 number of extra gaps= 2 total=79677 # 1r9lA.563.257 read from T0547.t04.many.frag # found chain 1r9lA in training set Warning: unaligning (T0547)D566 (1r9lA)P261 because P (beta_P) conformation "forbidden" or filtered. T0547 563 :LDY 1r9lA 258 :MQL T0547 567 :IHAIM 1r9lA 262 :VADIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=79679 # 1l3lA.563.197 read from T0547.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)Y565 (1l3lA)V200 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1l3lA)K201 because P (beta_P) conformation "forbidden" or filtered. T0547 563 :LD 1l3lA 198 :EG T0547 567 :IHAIM 1l3lA 202 :YNSVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=79681 # 2b5aA.563.21 read from T0547.t04.many.frag # found chain 2b5aA in training set T0547 563 :LDYDIHAIM 2b5aA 22 :KGVSQEELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79682 # 1yvvA.563.241 read from T0547.t04.many.frag # found chain 1yvvA in template set T0547 563 :LDYDIHAIM 1yvvA 242 :LDASREQVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79683 # 1ail.563.49 read from T0547.t04.many.frag # found chain 1ail in template set Warning: unaligning (T0547)D564 (1ail)G51 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1ail)N53 because P (beta_P) conformation "forbidden" or filtered. T0547 563 :L 1ail 50 :L T0547 565 :Y 1ail 52 :L T0547 567 :IHAIM 1ail 54 :IEAAT Number of specific fragments extracted= 3 number of extra gaps= 2 total=79686 # 1j5sA.563.437 read from T0547.t04.many.frag # found chain 1j5sA in template set Warning: unaligning (T0547)L563 (1j5sA)G426 because L (left) conformation "forbidden" or filtered. T0547 564 :DYDIHAIM 1j5sA 427 :QIPIKEAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=79687 # 1x6iA.563.15 read from T0547.t04.many.frag # found chain 1x6iA in training set T0547 563 :LDYDIHAIM 1x6iA 13 :CRRGMRELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79688 # 2ccyA.563.99 read from T0547.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0547)D566 (2ccyA)G103 because S (epsilon) conformation "forbidden" or filtered. T0547 563 :LDY 2ccyA 100 :AKA T0547 567 :IHAIM 2ccyA 104 :PDALK Number of specific fragments extracted= 2 number of extra gaps= 1 total=79690 # 1z53A.563.250 read from T0547.t04.many.frag # found chain 1z53A in template set Warning: unaligning (T0547)D566 (1z53A)D254 because D (zeta) conformation "forbidden" or filtered. T0547 563 :LDY 1z53A 251 :YAN T0547 567 :IHAIM 1z53A 255 :QDKFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=79692 # 1ytaA.563.76 read from T0547.t04.many.frag # found chain 1ytaA in template set T0547 563 :LDYDIHAIM 1ytaA 77 :STMGDREAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79693 # 1ew0A.563.48 read from T0547.t04.many.frag # found chain 1ew0A in training set T0547 563 :LDYDIHAIM 1ew0A 170 :FGYAEEEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79694 # 1u3eM.563.144 read from T0547.t04.many.frag # found chain 1u3eM in template set T0547 563 :LDYDIHAIM 1u3eM 145 :LGLTRGKVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79695 # 1u0jA.563.11 read from T0547.t04.many.frag # found chain 1u0jA in template set Warning: unaligning (T0547)L563 (1u0jA)G235 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D564 (1u0jA)I236 because E (beta_S) conformation "forbidden" or filtered. T0547 565 :YDIHAIM 1u0jA 237 :TSEKQWI Number of specific fragments extracted= 1 number of extra gaps= 1 total=79696 # 1ts9A.563.78 read from T0547.t04.many.frag # found chain 1ts9A in training set T0547 563 :LDYDIHAIM 1ts9A 79 :INFRPEDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79697 # 1no1A.563.37 read from T0547.t04.many.frag # found chain 1no1A in template set T0547 563 :LDYDIHAIM 1no1A 38 :AEYELEEIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=79698 # 1txlA.563.200 read from T0547.t04.many.frag # found chain 1txlA in training set T0547 563 :LDYDIHAIM 1txlA 201 :YQLSSEEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79699 # 1u7kA.563.29 read from T0547.t04.many.frag # found chain 1u7kA in template set T0547 563 :LDYDIHAIM 1u7kA 30 :FSEDPGKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79700 # 1c7nA.563.334 read from T0547.t04.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)D564 (1c7nA)K336 because L (left) conformation "forbidden" or filtered. T0547 563 :L 1c7nA 335 :L T0547 565 :YDIHAIM 1c7nA 337 :MDHKAME Number of specific fragments extracted= 2 number of extra gaps= 1 total=79702 # 1r1tA.563.68 read from T0547.t04.many.frag # found chain 1r1tA in training set T0547 563 :LDYDIHAIM 1r1tA 69 :IGVSESAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79703 # 2a2cA.564.295 read from T0547.t04.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)D564 (2a2cA)G276 because L (left) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 2a2cA 277 :ISLEEMLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=79704 # 1zv1A.564.37 read from T0547.t04.many.frag # found chain 1zv1A in training set Warning: unaligning (T0547)D566 (1zv1A)N40 because N (gamma') conformation "forbidden" or filtered. T0547 564 :DY 1zv1A 38 :DA T0547 567 :IHAIMD 1zv1A 41 :IEEASR Number of specific fragments extracted= 2 number of extra gaps= 1 total=79706 # 1fc3A.564.58 read from T0547.t04.many.frag # found chain 1fc3A in template set Warning: unaligning (T0547)Y565 (1fc3A)T199 because Y (epsilon') conformation "forbidden" or filtered. T0547 564 :D 1fc3A 198 :N T0547 566 :DIHAIMD 1fc3A 200 :TASRVER Number of specific fragments extracted= 2 number of extra gaps= 1 total=79708 # 2akaA.564.393 read from T0547.t04.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)D564 (2akaA)G383 because L (left) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 2akaA 384 :VNPSVLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=79709 # 1oaiA.564.32 read from T0547.t04.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1oaiA)D595 because D (zeta) conformation "forbidden" or filtered. T0547 567 :IHAIMD 1oaiA 596 :YTRSAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=79710 # 1k6kA.564.47 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 564 :DYDIHAIMD 1k6kA 48 :SVDLVALRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79711 # 1r9jA.564.640 read from T0547.t04.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)D564 (1r9jA)G639 because T (delta_L) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1r9jA 640 :ITVEEVVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=79712 # 1j75A.564.35 read from T0547.t04.many.frag # found chain 1j75A in template set Warning: unaligning (T0547)D564 (1j75A)Q139 because L (left) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1j75A 140 :VPKKTLNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=79713 # 1v4vA.564.317 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 564 :DYDIHAIMD 1v4vA 318 :GTDPEGVYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79714 # 1u8bA.564.103 read from T0547.t04.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 567 :IHAIMD 1u8bA 113 :PFHLHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79715 # 1l3lA.564.198 read from T0547.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D564 (1l3lA)G199 because L (left) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1l3lA 200 :VKYNSVRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=79716 # 2b5aA.564.22 read from T0547.t04.many.frag # found chain 2b5aA in training set Warning: unaligning (T0547)D564 (2b5aA)G23 because L (left) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 2b5aA 24 :VSQEELAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=79717 # 1hx6A.564.316 read from T0547.t04.many.frag # found chain 1hx6A in training set T0547 564 :DYDIHAIMD 1hx6A 318 :KLDPKTWAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79718 # 1u7kA.564.30 read from T0547.t04.many.frag # found chain 1u7kA in template set T0547 564 :DYDIHAIMD 1u7kA 31 :SEDPGKLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79719 # 1x6iA.564.16 read from T0547.t04.many.frag # found chain 1x6iA in training set T0547 564 :DYDIHAIMD 1x6iA 14 :RRGMRELDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79720 # 1yvvA.564.242 read from T0547.t04.many.frag # found chain 1yvvA in template set T0547 564 :DYDIHAIMD 1yvvA 243 :DASREQVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79721 # 1ail.564.50 read from T0547.t04.many.frag # found chain 1ail in template set Warning: unaligning (T0547)D564 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1ail 52 :LNIEAATH Number of specific fragments extracted= 1 number of extra gaps= 1 total=79722 # 1r9lA.564.258 read from T0547.t04.many.frag # found chain 1r9lA in training set T0547 564 :DYDIHAIMD 1r9lA 259 :QLPVADINA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79723 # 1no1A.564.38 read from T0547.t04.many.frag # found chain 1no1A in template set Warning: unaligning (T0547)D566 (1no1A)E41 because P (beta_P) conformation "forbidden" or filtered. T0547 564 :DY 1no1A 39 :EY T0547 567 :IHAIMD 1no1A 42 :LEEIMN Number of specific fragments extracted= 2 number of extra gaps= 1 total=79725 # 1j5sA.564.438 read from T0547.t04.many.frag # found chain 1j5sA in template set T0547 564 :DYDIHAIMD 1j5sA 427 :QIPIKEARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79726 # 1txlA.564.201 read from T0547.t04.many.frag # found chain 1txlA in training set T0547 564 :DYDIHAIMD 1txlA 202 :QLSSEEVVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79727 # 1ytaA.564.77 read from T0547.t04.many.frag # found chain 1ytaA in template set T0547 564 :DYDIHAIMD 1ytaA 78 :TMGDREAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79728 # 1z53A.564.251 read from T0547.t04.many.frag # found chain 1z53A in template set T0547 564 :DYDIHAIMD 1z53A 252 :ANDQDKFFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79729 # 1msk.564.311 read from T0547.t04.many.frag # found chain 1msk in template set Warning: unaligning (T0547)D564 (1msk)G1208 because L (left) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1msk 1209 :MSVTEVER Number of specific fragments extracted= 1 number of extra gaps= 1 total=79730 # 1o7jA.564.313 read from T0547.t04.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)D564 (1o7jA)T314 because Y (epsilon') conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1o7jA 315 :SDPKVIQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=79731 # 1xszA.564.328 read from T0547.t04.many.frag # found chain 1xszA in training set T0547 564 :DYDIHAIMD 1xszA 327 :DYEVGDLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79732 # 2ccyA.564.100 read from T0547.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0547)D566 (2ccyA)G103 because S (epsilon) conformation "forbidden" or filtered. T0547 564 :DY 2ccyA 101 :KA T0547 567 :IHAIMD 2ccyA 104 :PDALKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79734 # 1y0uA.564.42 read from T0547.t04.many.frag # found chain 1y0uA in training set T0547 564 :DYDIHAIMD 1y0uA 41 :GRSEEEIMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79735 # 1josA.564.71 read from T0547.t04.many.frag # found chain 1josA in training set T0547 564 :DYDIHAIMD 1josA 72 :EKASPYIRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79736 # 1dk0A.564.140 read from T0547.t04.many.frag # found chain 1dk0A in training set T0547 564 :DYDIHAIMD 1dk0A 141 :SGDTGALET Number of specific fragments extracted= 1 number of extra gaps= 0 total=79737 # 1k6kA.565.48 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 565 :YDIHAIMDI 1k6kA 49 :VDLVALRQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79738 # 1r9jA.565.641 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 565 :YDIHAIMDI 1r9jA 640 :ITVEEVVRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79739 # 1no1A.565.39 read from T0547.t04.many.frag # found chain 1no1A in template set Warning: unaligning (T0547)D566 (1no1A)E41 because P (beta_P) conformation "forbidden" or filtered. T0547 565 :Y 1no1A 40 :Y T0547 567 :IHAIMDI 1no1A 42 :LEEIMNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=79741 # 1v4vA.565.318 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 565 :YDIHAIMDI 1v4vA 319 :TDPEGVYRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79742 # 1fc3A.565.59 read from T0547.t04.many.frag # found chain 1fc3A in template set Warning: unaligning (T0547)Y565 (1fc3A)T199 because Y (epsilon') conformation "forbidden" or filtered. T0547 566 :DIHAIMDI 1fc3A 200 :TASRVERA Number of specific fragments extracted= 1 number of extra gaps= 1 total=79743 # 1u7kA.565.31 read from T0547.t04.many.frag # found chain 1u7kA in template set T0547 565 :YDIHAIMDI 1u7kA 32 :EDPGKLTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79744 # 1ta8A.565.261 read from T0547.t04.many.frag # found chain 1ta8A in training set Warning: unaligning (T0547)D566 (1ta8A)S263 because Y (epsilon') conformation "forbidden" or filtered. T0547 565 :Y 1ta8A 262 :Q T0547 567 :IHAIMDI 1ta8A 264 :IDEVWAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=79746 # 1kyqA.565.238 read from T0547.t04.many.frag # found chain 1kyqA in template set T0547 565 :YDIHAIMDI 1kyqA 239 :IDVKRLLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79747 # 1j75A.565.36 read from T0547.t04.many.frag # found chain 1j75A in template set T0547 565 :YDIHAIMDI 1j75A 140 :VPKKTLNQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79748 # 1w2yA.565.212 read from T0547.t04.many.frag # found chain 1w2yA in training set T0547 565 :YDIHAIMDI 1w2yA 213 :LDFDTIYKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79749 # 1dk0A.565.141 read from T0547.t04.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)Y565 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1dk0A)D143 because D (zeta) conformation "forbidden" or filtered. T0547 567 :IHAIMDI 1dk0A 144 :TGALETA Number of specific fragments extracted= 1 number of extra gaps= 1 total=79750 # 1x6iA.565.17 read from T0547.t04.many.frag # found chain 1x6iA in training set T0547 565 :YDIHAIMDI 1x6iA 15 :RGMRELDIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79751 # 1ail.565.51 read from T0547.t04.many.frag # found chain 1ail in template set Warning: unaligning (T0547)D566 (1ail)N53 because P (beta_P) conformation "forbidden" or filtered. T0547 565 :Y 1ail 52 :L T0547 567 :IHAIMDI 1ail 54 :IEAATHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=79753 # 1tv8A.565.295 read from T0547.t04.many.frag # found chain 1tv8A in template set T0547 565 :YDIHAIMDI 1tv8A 296 :VTDEELKEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79754 # 1ka8A.565.53 read from T0547.t04.many.frag # found chain 1ka8A in template set T0547 565 :YDIHAIMDI 1ka8A 54 :LSLKMFGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79755 # 1l3lA.565.199 read from T0547.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)D566 (1l3lA)K201 because P (beta_P) conformation "forbidden" or filtered. T0547 565 :Y 1l3lA 200 :V T0547 567 :IHAIMDI 1l3lA 202 :YNSVRVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=79757 # 1hx6A.565.317 read from T0547.t04.many.frag # found chain 1hx6A in training set T0547 565 :YDIHAIMDI 1hx6A 319 :LDPKTWAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79758 # 1ydiA.565.204 read from T0547.t04.many.frag # found chain 1ydiA in training set T0547 565 :YDIHAIMDI 1ydiA 200 :ELLPVLISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79759 # 1unnC.565.70 read from T0547.t04.many.frag # found chain 1unnC in template set Warning: unaligning (T0547)D566 (1unnC)N308 because E (beta_S) conformation "forbidden" or filtered. T0547 565 :Y 1unnC 307 :L T0547 567 :IHAIMDI 1unnC 309 :KADLIAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=79761 # 1hbnB.565.261 read from T0547.t04.many.frag # found chain 1hbnB in training set Warning: unaligning (T0547)D566 (1hbnB)T264 because Y (epsilon') conformation "forbidden" or filtered. T0547 565 :Y 1hbnB 263 :G T0547 567 :IHAIMDI 1hbnB 265 :VGSVIAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=79763 # 1wbeA.565.170 read from T0547.t04.many.frag # found chain 1wbeA in training set T0547 565 :YDIHAIMDI 1wbeA 171 :VTEEECLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79764 # 1josA.565.72 read from T0547.t04.many.frag # found chain 1josA in training set T0547 565 :YDIHAIMDI 1josA 73 :KASPYIRSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79765 # 1u8bA.565.104 read from T0547.t04.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 567 :IHAIMDI 1u8bA 113 :PFHLHRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79766 # 1oaiA.565.33 read from T0547.t04.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. T0547 566 :DIHAIMDI 1oaiA 595 :DYTRSAQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=79767 # 1zpvA.565.56 read from T0547.t04.many.frag # found chain 1zpvA in template set T0547 565 :YDIHAIMDI 1zpvA 54 :QDFTYLRNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79768 # 1u8vA.565.334 read from T0547.t04.many.frag # found chain 1u8vA in training set T0547 565 :YDIHAIMDI 1u8vA 335 :HLNETLYCC Number of specific fragments extracted= 1 number of extra gaps= 0 total=79769 # 1xszA.565.329 read from T0547.t04.many.frag # found chain 1xszA in training set T0547 565 :YDIHAIMDI 1xszA 328 :YEVGDLIKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79770 # 1iu4A.565.140 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)Y565 (1iu4A)H141 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)E143 Warning: unaligning (T0547)I567 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)E143 Warning: unaligning (T0547)H568 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)S144 Warning: unaligning (T0547)D572 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)N149 Warning: unaligning (T0547)I573 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)N149 T0547 569 :AIM 1iu4A 145 :AYL Number of specific fragments extracted= 1 number of extra gaps= 2 total=79771 # 1u84A.565.44 read from T0547.t04.many.frag # found chain 1u84A in training set T0547 565 :YDIHAIMDI 1u84A 42 :EDARTLAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79772 1hynP expands to /projects/compbio/data/pdb/1hyn.pdb.gz 1hynP:# 1hynP.565.301 read from T0547.t04.many.frag # adding 1hynP to template set # found chain 1hynP in template set T0547 565 :YDIHAIMDI 1hynP 302 :QSRGELLHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79773 # 1ta8A.566.262 read from T0547.t04.many.frag # found chain 1ta8A in training set Warning: unaligning (T0547)D566 (1ta8A)S263 because Y (epsilon') conformation "forbidden" or filtered. T0547 567 :IHAIMDIL 1ta8A 264 :IDEVWAYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=79774 # 1kyqA.566.239 read from T0547.t04.many.frag # found chain 1kyqA in template set T0547 566 :DIHAIMDIL 1kyqA 240 :DVKRLLDLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79775 # 1no1A.566.40 read from T0547.t04.many.frag # found chain 1no1A in template set T0547 566 :DIHAIMDIL 1no1A 41 :ELEEIMNNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79776 # 1r9jA.566.642 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 566 :DIHAIMDIL 1r9jA 641 :TVEEVVRTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79777 # 1k6kA.566.49 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 566 :DIHAIMDIL 1k6kA 50 :DLVALRQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79778 # 1u7kA.566.32 read from T0547.t04.many.frag # found chain 1u7kA in template set T0547 566 :DIHAIMDIL 1u7kA 33 :DPGKLTALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79779 # 1v4vA.566.319 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 566 :DIHAIMDIL 1v4vA 320 :DPEGVYRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79780 # 1w2yA.566.213 read from T0547.t04.many.frag # found chain 1w2yA in training set T0547 566 :DIHAIMDIL 1w2yA 214 :DFDTIYKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79781 # 1fc3A.566.60 read from T0547.t04.many.frag # found chain 1fc3A in template set T0547 566 :DIHAIMDIL 1fc3A 200 :TASRVERAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79782 # 1ydiA.566.205 read from T0547.t04.many.frag # found chain 1ydiA in training set T0547 566 :DIHAIMDIL 1ydiA 201 :LLPVLISAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=79783 # 1tv8A.566.296 read from T0547.t04.many.frag # found chain 1tv8A in template set T0547 566 :DIHAIMDIL 1tv8A 297 :TDEELKEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79784 # 1u8vA.566.335 read from T0547.t04.many.frag # found chain 1u8vA in training set T0547 566 :DIHAIMDIL 1u8vA 336 :LNETLYCCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79785 # 1iu4A.566.141 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)D566 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)E143 Warning: unaligning (T0547)I567 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)E143 Warning: unaligning (T0547)H568 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)S144 Warning: unaligning (T0547)D572 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)N149 Warning: unaligning (T0547)I573 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)N149 T0547 569 :AIM 1iu4A 145 :AYL T0547 574 :L 1iu4A 150 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=79787 # 1e0tA.566.424 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 566 :DIHAIMDIL 1e0tA 425 :STDDFYRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79788 # 1u84A.566.45 read from T0547.t04.many.frag # found chain 1u84A in training set T0547 566 :DIHAIMDIL 1u84A 43 :DARTLAARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79789 # 1dk0A.566.142 read from T0547.t04.many.frag # found chain 1dk0A in training set T0547 566 :DIHAIMDIL 1dk0A 143 :DTGALETAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79790 # 1ail.566.52 read from T0547.t04.many.frag # found chain 1ail in template set T0547 566 :DIHAIMDIL 1ail 53 :NIEAATHVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79791 # 1ka8A.566.54 read from T0547.t04.many.frag # found chain 1ka8A in template set T0547 566 :DIHAIMDIL 1ka8A 55 :SLKMFGLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79792 # 1zpvA.566.57 read from T0547.t04.many.frag # found chain 1zpvA in template set T0547 566 :DIHAIMDIL 1zpvA 55 :DFTYLRNEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79793 # 1j75A.566.37 read from T0547.t04.many.frag # found chain 1j75A in template set T0547 566 :DIHAIMDIL 1j75A 141 :PKKTLNQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79794 # 1hbnB.566.262 read from T0547.t04.many.frag # found chain 1hbnB in training set Warning: unaligning (T0547)D566 (1hbnB)T264 because Y (epsilon') conformation "forbidden" or filtered. T0547 567 :IHAIMDIL 1hbnB 265 :VGSVIADL Number of specific fragments extracted= 1 number of extra gaps= 1 total=79795 # 1unnC.566.71 read from T0547.t04.many.frag # found chain 1unnC in template set Warning: unaligning (T0547)D566 (1unnC)N308 because E (beta_S) conformation "forbidden" or filtered. T0547 567 :IHAIMDIL 1unnC 309 :KADLIATA Number of specific fragments extracted= 1 number of extra gaps= 1 total=79796 # 1wbeA.566.171 read from T0547.t04.many.frag # found chain 1wbeA in training set T0547 566 :DIHAIMDIL 1wbeA 172 :TEEECLEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79797 # 1josA.566.73 read from T0547.t04.many.frag # found chain 1josA in training set T0547 566 :DIHAIMDIL 1josA 74 :ASPYIRSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79798 # 1hynP.566.302 read from T0547.t04.many.frag # found chain 1hynP in template set T0547 566 :DIHAIMDIL 1hynP 303 :SRGELLHSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79799 # 1hx6A.566.318 read from T0547.t04.many.frag # found chain 1hx6A in training set T0547 566 :DIHAIMDIL 1hx6A 320 :DPKTWAAQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79800 # 1x6iA.566.18 read from T0547.t04.many.frag # found chain 1x6iA in training set T0547 566 :DIHAIMDIL 1x6iA 16 :GMRELDISI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79801 # 1xrjA.566.157 read from T0547.t04.many.frag # found chain 1xrjA in template set T0547 566 :DIHAIMDIL 1xrjA 158 :DADTRLSRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79802 # 1ks9A.566.222 read from T0547.t04.many.frag # found chain 1ks9A in training set Warning: unaligning (T0547)D566 (1ks9A)S223 because E (beta_S) conformation "forbidden" or filtered. T0547 567 :IHAIMDIL 1ks9A 224 :AEDLRDYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=79803 # 1xszA.566.330 read from T0547.t04.many.frag # found chain 1xszA in training set T0547 566 :DIHAIMDIL 1xszA 329 :EVGDLIKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=79804 # 1k6kA.567.50 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 567 :IHAIMDILN 1k6kA 51 :LVALRQELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79805 # 1r9jA.567.643 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 567 :IHAIMDILN 1r9jA 642 :VEEVVRTGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79806 # 1kyqA.567.240 read from T0547.t04.many.frag # found chain 1kyqA in template set T0547 567 :IHAIMDILN 1kyqA 241 :VKRLLDLFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79807 # 1ta8A.567.263 read from T0547.t04.many.frag # found chain 1ta8A in training set T0547 567 :IHAIMDILN 1ta8A 264 :IDEVWAYIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79808 # 1no1A.567.41 read from T0547.t04.many.frag # found chain 1no1A in template set T0547 567 :IHAIMDILN 1no1A 42 :LEEIMNNLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79809 # 1u7kA.567.33 read from T0547.t04.many.frag # found chain 1u7kA in template set T0547 567 :IHAIMDILN 1u7kA 34 :PGKLTALIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79810 # 1w2yA.567.214 read from T0547.t04.many.frag # found chain 1w2yA in training set T0547 567 :IHAIMDILN 1w2yA 215 :FDTIYKKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79811 # 1e0tA.567.425 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 567 :IHAIMDILN 1e0tA 426 :TDDFYRLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79812 # 1dk0A.567.143 read from T0547.t04.many.frag # found chain 1dk0A in training set T0547 567 :IHAIMDILN 1dk0A 144 :TGALETALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=79813 # 1v4vA.567.320 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 567 :IHAIMDILN 1v4vA 321 :PEGVYRVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79814 # 1fc3A.567.61 read from T0547.t04.many.frag # found chain 1fc3A in template set T0547 567 :IHAIMDILN 1fc3A 201 :ASRVERAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79815 # 1ka8A.567.55 read from T0547.t04.many.frag # found chain 1ka8A in template set T0547 567 :IHAIMDILN 1ka8A 56 :LKMFGLGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=79816 # 1wbeA.567.172 read from T0547.t04.many.frag # found chain 1wbeA in training set T0547 567 :IHAIMDILN 1wbeA 173 :EEECLEKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79817 # 1unnC.567.72 read from T0547.t04.many.frag # found chain 1unnC in template set T0547 567 :IHAIMDILN 1unnC 309 :KADLIATAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79818 # 1u84A.567.46 read from T0547.t04.many.frag # found chain 1u84A in training set T0547 567 :IHAIMDILN 1u84A 44 :ARTLAARIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79819 # 1v74B.567.70 read from T0547.t04.many.frag # found chain 1v74B in template set T0547 567 :IHAIMDILN 1v74B 71 :DNGLKVEVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79820 # 1ydiA.567.206 read from T0547.t04.many.frag # found chain 1ydiA in training set T0547 567 :IHAIMDILN 1ydiA 202 :LPVLISAMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79821 # 1tv8A.567.297 read from T0547.t04.many.frag # found chain 1tv8A in template set T0547 567 :IHAIMDILN 1tv8A 298 :DEELKEQFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79822 # 1iu4A.567.142 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)I567 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)E143 Warning: unaligning (T0547)H568 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)S144 Warning: unaligning (T0547)D572 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)N149 Warning: unaligning (T0547)I573 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)N149 T0547 569 :AIM 1iu4A 145 :AYL T0547 574 :LN 1iu4A 150 :LK Number of specific fragments extracted= 2 number of extra gaps= 2 total=79824 # 1u8vA.567.336 read from T0547.t04.many.frag # found chain 1u8vA in training set T0547 567 :IHAIMDILN 1u8vA 337 :NETLYCCGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79825 # 1zpvA.567.58 read from T0547.t04.many.frag # found chain 1zpvA in template set T0547 567 :IHAIMDILN 1zpvA 56 :FTYLRNEFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79826 # 1hlvA.567.96 read from T0547.t04.many.frag # found chain 1hlvA in template set T0547 567 :IHAIMDILN 1hlvA 97 :GIILKEKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79827 # 1obfO.567.255 read from T0547.t04.many.frag # found chain 1obfO in template set T0547 567 :IHAIMDILN 1obfO 256 :VEEVNGILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79828 # 1ail.567.53 read from T0547.t04.many.frag # found chain 1ail in template set T0547 567 :IHAIMDILN 1ail 54 :IEAATHVGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79829 # 1q7zA.567.540 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 567 :IHAIMDILN 1q7zA 541 :DETLMKTLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=79830 # 1j75A.567.38 read from T0547.t04.many.frag # found chain 1j75A in template set T0547 567 :IHAIMDILN 1j75A 142 :KKTLNQVLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=79831 # 1hx6A.567.319 read from T0547.t04.many.frag # found chain 1hx6A in training set T0547 567 :IHAIMDILN 1hx6A 321 :PKTWAAQTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79832 # 1x6iA.567.19 read from T0547.t04.many.frag # found chain 1x6iA in training set T0547 567 :IHAIMDILN 1x6iA 17 :MRELDISIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=79833 # 1hynP.567.303 read from T0547.t04.many.frag # found chain 1hynP in template set T0547 567 :IHAIMDILN 1hynP 304 :RGELLHSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79834 # 1xrjA.567.158 read from T0547.t04.many.frag # found chain 1xrjA in template set T0547 567 :IHAIMDILN 1xrjA 159 :ADTRLSRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79835 # 1kyqA.568.241 read from T0547.t04.many.frag # found chain 1kyqA in template set T0547 568 :HAIMDILNE 1kyqA 242 :KRLLDLFKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79836 # 1r9jA.568.644 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 568 :HAIMDILNE 1r9jA 643 :EEVVRTGRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79837 # 1k6kA.568.51 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 568 :HAIMDILNE 1k6kA 52 :VALRQELEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79838 # 1no1A.568.42 read from T0547.t04.many.frag # found chain 1no1A in template set T0547 568 :HAIMDILNE 1no1A 43 :EEIMNNLTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79839 # 1ta8A.568.264 read from T0547.t04.many.frag # found chain 1ta8A in training set T0547 568 :HAIMDILNE 1ta8A 265 :DEVWAYIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79840 # 1w2yA.568.215 read from T0547.t04.many.frag # found chain 1w2yA in training set T0547 568 :HAIMDILNE 1w2yA 216 :DTIYKKLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79841 # 1iu4A.568.143 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)H568 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)S144 Warning: unaligning (T0547)D572 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)N149 Warning: unaligning (T0547)I573 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)N149 T0547 569 :AIM 1iu4A 145 :AYL T0547 574 :LNE 1iu4A 150 :LKK Number of specific fragments extracted= 2 number of extra gaps= 2 total=79843 # 1u7kA.568.34 read from T0547.t04.many.frag # found chain 1u7kA in template set T0547 568 :HAIMDILNE 1u7kA 35 :GKLTALIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=79844 # 1e0tA.568.426 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 568 :HAIMDILNE 1e0tA 427 :DDFYRLGKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79845 # 1wbeA.568.173 read from T0547.t04.many.frag # found chain 1wbeA in training set T0547 568 :HAIMDILNE 1wbeA 174 :EECLEKVRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79846 # 1v4vA.568.321 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 568 :HAIMDILNE 1v4vA 322 :EGVYRVVKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79847 # 1u84A.568.47 read from T0547.t04.many.frag # found chain 1u84A in training set T0547 568 :HAIMDILNE 1u84A 45 :RTLAARIQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79848 # 1q7zA.568.541 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 568 :HAIMDILNE 1q7zA 542 :ETLMKTLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79849 # 1tv8A.568.298 read from T0547.t04.many.frag # found chain 1tv8A in template set T0547 568 :HAIMDILNE 1tv8A 299 :EELKEQFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79850 # 1fc3A.568.62 read from T0547.t04.many.frag # found chain 1fc3A in template set T0547 568 :HAIMDILNE 1fc3A 202 :SRVERAIRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=79851 # 1ka8A.568.56 read from T0547.t04.many.frag # found chain 1ka8A in template set T0547 568 :HAIMDILNE 1ka8A 57 :KMFGLGLPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79852 # 1unnC.568.73 read from T0547.t04.many.frag # found chain 1unnC in template set T0547 568 :HAIMDILNE 1unnC 310 :ADLIATARK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79853 # 1ydiA.568.207 read from T0547.t04.many.frag # found chain 1ydiA in training set T0547 568 :HAIMDILNE 1ydiA 203 :PVLISAMKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79854 # 1v74B.568.71 read from T0547.t04.many.frag # found chain 1v74B in template set T0547 568 :HAIMDILNE 1v74B 72 :NGLKVEVRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79855 # 1hlvA.568.97 read from T0547.t04.many.frag # found chain 1hlvA in template set T0547 568 :HAIMDILNE 1hlvA 98 :IILKEKALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79856 # 1dk0A.568.144 read from T0547.t04.many.frag # found chain 1dk0A in training set T0547 568 :HAIMDILNE 1dk0A 145 :GALETALNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79857 # 1zpvA.568.59 read from T0547.t04.many.frag # found chain 1zpvA in template set T0547 568 :HAIMDILNE 1zpvA 57 :TYLRNEFEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79858 # 2a6aA.568.176 read from T0547.t04.many.frag # found chain 2a6aA in template set T0547 568 :HAIMDILNE 2a6aA 165 :AVLVEESER Number of specific fragments extracted= 1 number of extra gaps= 0 total=79859 # 1u8vA.568.337 read from T0547.t04.many.frag # found chain 1u8vA in training set T0547 568 :HAIMDILNE 1u8vA 338 :ETLYCCGIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79860 # 2a84A.568.228 read from T0547.t04.many.frag # found chain 2a84A in training set T0547 568 :HAIMDILNE 2a84A 229 :QAALDAARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79861 # 1hynP.568.304 read from T0547.t04.many.frag # found chain 1hynP in template set T0547 568 :HAIMDILNE 1hynP 305 :GELLHSLEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79862 # 1wmhA.568.28 read from T0547.t04.many.frag # found chain 1wmhA in training set T0547 568 :HAIMDILNE 1wmhA 39 :EGLCNEVRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79863 # 2akaB.568.243 read from T0547.t04.many.frag # found chain 2akaB in template set T0547 568 :HAIMDILNE 2akaB 249 :TAALAAERK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79864 # 2bnxA.568.230 read from T0547.t04.many.frag # found chain 2bnxA in template set T0547 568 :HAIMDILNE 2bnxA 361 :DEDFFDLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79865 # 1xrjA.568.159 read from T0547.t04.many.frag # found chain 1xrjA in template set T0547 568 :HAIMDILNE 1xrjA 160 :DTRLSRRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79866 # 1kyqA.569.242 read from T0547.t04.many.frag # found chain 1kyqA in template set T0547 569 :AIMDILNER 1kyqA 243 :RLLDLFKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=79867 # 1k6kA.569.52 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 569 :AIMDILNER 1k6kA 53 :ALRQELEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79868 # 1ta8A.569.265 read from T0547.t04.many.frag # found chain 1ta8A in training set T0547 569 :AIMDILNER 1ta8A 266 :EVWAYIEEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=79869 # 1r9jA.569.645 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 569 :AIMDILNER 1r9jA 644 :EVVRTGREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79870 # 1no1A.569.43 read from T0547.t04.many.frag # found chain 1no1A in template set T0547 569 :AIMDILNER 1no1A 44 :EIMNNLTDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=79871 # 1e0tA.569.427 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 569 :AIMDILNER 1e0tA 428 :DFYRLGKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79872 # 1q7zA.569.542 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 569 :AIMDILNER 1q7zA 543 :TLMKTLNAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79873 # 1u7kA.569.35 read from T0547.t04.many.frag # found chain 1u7kA in template set T0547 569 :AIMDILNER 1u7kA 36 :KLTALIESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79874 # 1w2yA.569.216 read from T0547.t04.many.frag # found chain 1w2yA in training set T0547 569 :AIMDILNER 1w2yA 217 :TIYKKLEEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=79875 # 1dk0A.569.145 read from T0547.t04.many.frag # found chain 1dk0A in training set T0547 569 :AIMDILNER 1dk0A 146 :ALETALNGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79876 # 1ka8A.569.57 read from T0547.t04.many.frag # found chain 1ka8A in template set T0547 569 :AIMDILNER 1ka8A 58 :MFGLGLPVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=79877 # 1iu4A.569.144 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)D572 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)N149 Warning: unaligning (T0547)I573 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)N149 T0547 569 :AIM 1iu4A 145 :AYL T0547 574 :LNER 1iu4A 150 :LKKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=79879 # 1v74B.569.72 read from T0547.t04.many.frag # found chain 1v74B in template set T0547 569 :AIMDILNER 1v74B 73 :GLKVEVRSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79880 # 1unnC.569.74 read from T0547.t04.many.frag # found chain 1unnC in template set T0547 569 :AIMDILNER 1unnC 311 :DLIATARKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79881 # 1fc3A.569.63 read from T0547.t04.many.frag # found chain 1fc3A in template set T0547 569 :AIMDILNER 1fc3A 203 :RVERAIRHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79882 # 1v4vA.569.322 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 569 :AIMDILNER 1v4vA 323 :GVYRVVKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79883 # 1u84A.569.48 read from T0547.t04.many.frag # found chain 1u84A in training set T0547 569 :AIMDILNER 1u84A 46 :TLAARIQSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79884 # 1ydiA.569.208 read from T0547.t04.many.frag # found chain 1ydiA in training set T0547 569 :AIMDILNER 1ydiA 204 :VLISAMKIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79885 # 1hlvA.569.98 read from T0547.t04.many.frag # found chain 1hlvA in template set T0547 569 :AIMDILNER 1hlvA 99 :ILKEKALRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79886 # 1wbeA.569.174 read from T0547.t04.many.frag # found chain 1wbeA in training set T0547 569 :AIMDILNER 1wbeA 175 :ECLEKVRLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79887 # 1tv8A.569.299 read from T0547.t04.many.frag # found chain 1tv8A in template set T0547 569 :AIMDILNER 1tv8A 300 :ELKEQFKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79888 # 1obfO.569.257 read from T0547.t04.many.frag # found chain 1obfO in template set T0547 569 :AIMDILNER 1obfO 258 :EVNGILKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79889 # 1f45B.569.110 read from T0547.t04.many.frag # found chain 1f45B in template set T0547 569 :AIMDILNER 1f45B 111 :MYQVEFKTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=79890 # 1u8vA.569.338 read from T0547.t04.many.frag # found chain 1u8vA in training set T0547 569 :AIMDILNER 1u8vA 339 :TLYCCGIAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=79891 # 1zpvA.569.60 read from T0547.t04.many.frag # found chain 1zpvA in template set T0547 569 :AIMDILNER 1zpvA 58 :YLRNEFEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79892 # 1j75A.569.40 read from T0547.t04.many.frag # found chain 1j75A in template set T0547 569 :AIMDILNER 1j75A 144 :TLNQVLYRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79893 # 2igd.569.29 read from T0547.t04.many.frag # found chain 2igd in training set T0547 569 :AIMDILNER 2igd 30 :TAEKAFKQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=79894 # 2bnxA.569.231 read from T0547.t04.many.frag # found chain 2bnxA in template set T0547 569 :AIMDILNER 2bnxA 362 :EDFFDLKGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79895 # 1g3kA.569.128 read from T0547.t04.many.frag # found chain 1g3kA in template set T0547 569 :AIMDILNER 1g3kA 129 :YALSAARAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79896 # 2akaB.569.244 read from T0547.t04.many.frag # found chain 2akaB in template set T0547 569 :AIMDILNER 2akaB 250 :AALAAERKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79897 # 1kyqA.570.243 read from T0547.t04.many.frag # found chain 1kyqA in template set T0547 570 :IMDILNERI 1kyqA 244 :LLDLFKVMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79898 # 1ta8A.570.266 read from T0547.t04.many.frag # found chain 1ta8A in training set T0547 570 :IMDILNERI 1ta8A 267 :VWAYIEEYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=79899 # 1k6kA.570.53 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 570 :IMDILNERI 1k6kA 54 :LRQELEAFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79900 # 1q7zA.570.543 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 570 :IMDILNERI 1q7zA 544 :LMKTLNATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79901 # 1ka8A.570.58 read from T0547.t04.many.frag # found chain 1ka8A in template set T0547 570 :IMDILNERI 1ka8A 59 :FGLGLPVML Number of specific fragments extracted= 1 number of extra gaps= 0 total=79902 # 1v74B.570.73 read from T0547.t04.many.frag # found chain 1v74B in template set T0547 570 :IMDILNERI 1v74B 74 :LKVEVRSIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79903 # 1u7kA.570.36 read from T0547.t04.many.frag # found chain 1u7kA in template set T0547 570 :IMDILNERI 1u7kA 37 :LTALIESVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79904 # 1r9jA.570.646 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 570 :IMDILNERI 1r9jA 645 :VVRTGRELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79905 # 1iu4A.570.145 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)D572 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)N149 Warning: unaligning (T0547)I573 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)N149 T0547 570 :IM 1iu4A 146 :YL T0547 574 :LNERI 1iu4A 150 :LKKEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=79907 # 1w2yA.570.217 read from T0547.t04.many.frag # found chain 1w2yA in training set T0547 570 :IMDILNERI 1w2yA 218 :IYKKLEECY Number of specific fragments extracted= 1 number of extra gaps= 0 total=79908 # 1e0tA.570.428 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 570 :IMDILNERI 1e0tA 429 :FYRLGKELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79909 # 1f45B.570.111 read from T0547.t04.many.frag # found chain 1f45B in template set T0547 570 :IMDILNERI 1f45B 112 :YQVEFKTMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=79910 # 1g3kA.570.129 read from T0547.t04.many.frag # found chain 1g3kA in template set T0547 570 :IMDILNERI 1g3kA 130 :ALSAARALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79911 # 1unnC.570.75 read from T0547.t04.many.frag # found chain 1unnC in template set T0547 570 :IMDILNERI 1unnC 312 :LIATARKTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=79912 # 1no1A.570.44 read from T0547.t04.many.frag # found chain 1no1A in template set T0547 570 :IMDILNERI 1no1A 45 :IMNNLTDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79913 # 1dk0A.570.146 read from T0547.t04.many.frag # found chain 1dk0A in training set T0547 570 :IMDILNERI 1dk0A 147 :LETALNGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79914 # 1obfO.570.258 read from T0547.t04.many.frag # found chain 1obfO in template set T0547 570 :IMDILNERI 1obfO 259 :VNGILKAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79915 # 1u84A.570.49 read from T0547.t04.many.frag # found chain 1u84A in training set T0547 570 :IMDILNERI 1u84A 47 :LAARIQSIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=79916 # 1tv8A.570.300 read from T0547.t04.many.frag # found chain 1tv8A in template set T0547 570 :IMDILNERI 1tv8A 301 :LKEQFKALW Number of specific fragments extracted= 1 number of extra gaps= 0 total=79917 # 2bnxA.570.232 read from T0547.t04.many.frag # found chain 2bnxA in template set T0547 570 :IMDILNERI 2bnxA 363 :DFFDLKGRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79918 # 1h54A.570.273 read from T0547.t04.many.frag # found chain 1h54A in template set T0547 570 :IMDILNERI 1h54A 274 :LTAAMHQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79919 # 2a84A.570.230 read from T0547.t04.many.frag # found chain 2a84A in training set T0547 570 :IMDILNERI 2a84A 231 :ALDAARAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79920 # 1j75A.570.41 read from T0547.t04.many.frag # found chain 1j75A in template set T0547 570 :IMDILNERI 1j75A 145 :LNQVLYRLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79921 # 1hlvA.570.99 read from T0547.t04.many.frag # found chain 1hlvA in template set T0547 570 :IMDILNERI 1hlvA 100 :LKEKALRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79922 # 1ydiA.570.209 read from T0547.t04.many.frag # found chain 1ydiA in training set T0547 570 :IMDILNERI 1ydiA 205 :LISAMKIFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79923 # 1v4vA.570.323 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 570 :IMDILNERI 1v4vA 324 :VYRVVKGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79924 # 2igd.570.30 read from T0547.t04.many.frag # found chain 2igd in training set T0547 570 :IMDILNERI 2igd 31 :AEKAFKQYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79925 # 2blkA.570.31 read from T0547.t04.many.frag # found chain 2blkA in template set T0547 570 :IMDILNERI 2blkA 32 :FCLKLELRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79926 # 1qo0D.570.166 read from T0547.t04.many.frag # found chain 1qo0D in template set T0547 570 :IMDILNERI 1qo0D 167 :AHQHLSREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79927 # 1fc3A.570.64 read from T0547.t04.many.frag # found chain 1fc3A in template set T0547 570 :IMDILNERI 1fc3A 204 :VERAIRHAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79928 # 1kyqA.571.244 read from T0547.t04.many.frag # found chain 1kyqA in template set T0547 571 :MDILNERIS 1kyqA 245 :LDLFKVMFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79929 # 1k6kA.571.54 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 571 :MDILNERIS 1k6kA 55 :RQELEAFIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79930 # 1ta8A.571.267 read from T0547.t04.many.frag # found chain 1ta8A in training set T0547 571 :MDILNERIS 1ta8A 268 :WAYIEEYHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79931 # 1r9jA.571.647 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 571 :MDILNERIS 1r9jA 646 :VRTGRELAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79932 # 1q7zA.571.544 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 571 :MDILNERIS 1q7zA 545 :MKTLNATLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79933 # 1e0tA.571.429 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 571 :MDILNERIS 1e0tA 430 :YRLGKELAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79934 # 1ka8A.571.59 read from T0547.t04.many.frag # found chain 1ka8A in template set T0547 571 :MDILNERIS 1ka8A 60 :GLGLPVMLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79935 # 1v74B.571.74 read from T0547.t04.many.frag # found chain 1v74B in template set T0547 571 :MDILNERIS 1v74B 75 :KVEVRSILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79936 # 1no1A.571.45 read from T0547.t04.many.frag # found chain 1no1A in template set T0547 571 :MDILNERIS 1no1A 46 :MNNLTDYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79937 # 1iu4A.571.146 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)D572 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)N149 Warning: unaligning (T0547)I573 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)N149 T0547 571 :M 1iu4A 147 :L T0547 574 :LNERIS 1iu4A 150 :LKKELA Number of specific fragments extracted= 2 number of extra gaps= 1 total=79939 # 1u7kA.571.37 read from T0547.t04.many.frag # found chain 1u7kA in template set T0547 571 :MDILNERIS 1u7kA 38 :TALIESVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79940 # 1hlvA.571.100 read from T0547.t04.many.frag # found chain 1hlvA in template set T0547 571 :MDILNERIS 1hlvA 101 :KEKALRIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79941 # 2a6aA.571.179 read from T0547.t04.many.frag # found chain 2a6aA in template set T0547 571 :MDILNERIS 2a6aA 168 :VEESERLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79942 # 1w2yA.571.218 read from T0547.t04.many.frag # found chain 1w2yA in training set T0547 571 :MDILNERIS 1w2yA 219 :YKKLEECYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79943 # 2igd.571.31 read from T0547.t04.many.frag # found chain 2igd in training set T0547 571 :MDILNERIS 2igd 32 :EKAFKQYAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=79944 # 1unnC.571.76 read from T0547.t04.many.frag # found chain 1unnC in template set T0547 571 :MDILNERIS 1unnC 313 :IATARKTWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79945 # 1tv8A.571.301 read from T0547.t04.many.frag # found chain 1tv8A in template set T0547 571 :MDILNERIS 1tv8A 302 :KEQFKALWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79946 # 1u84A.571.50 read from T0547.t04.many.frag # found chain 1u84A in training set T0547 571 :MDILNERIS 1u84A 48 :AARIQSIYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79947 # 2c5uA.571.322 read from T0547.t04.many.frag # found chain 2c5uA in template set T0547 571 :MDILNERIS 2c5uA 322 :AMEAQGVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79948 # 1f45B.571.112 read from T0547.t04.many.frag # found chain 1f45B in template set T0547 571 :MDILNERIS 1f45B 113 :QVEFKTMNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79949 # 1dk0A.571.147 read from T0547.t04.many.frag # found chain 1dk0A in training set T0547 571 :MDILNERIS 1dk0A 148 :ETALNGILD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79950 # 1obfO.571.259 read from T0547.t04.many.frag # found chain 1obfO in template set Warning: unaligning (T0547)S579 (1obfO)E268 because G (3-10) conformation "forbidden" or filtered. T0547 571 :MDILNERI 1obfO 260 :NGILKAAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=79951 # 1g3kA.571.130 read from T0547.t04.many.frag # found chain 1g3kA in template set T0547 571 :MDILNERIS 1g3kA 131 :LSAARALVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79952 # 1j75A.571.42 read from T0547.t04.many.frag # found chain 1j75A in template set T0547 571 :MDILNERIS 1j75A 146 :NQVLYRLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79953 # 2bnxA.571.233 read from T0547.t04.many.frag # found chain 2bnxA in template set T0547 571 :MDILNERIS 2bnxA 364 :FFDLKGRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=79954 # 2akaB.571.246 read from T0547.t04.many.frag # found chain 2akaB in template set T0547 571 :MDILNERIS 2akaB 252 :LAAERKFFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79955 # 1wbeA.571.176 read from T0547.t04.many.frag # found chain 1wbeA in training set T0547 571 :MDILNERIS 1wbeA 177 :LEKVRLFLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79956 # 1zpvA.571.62 read from T0547.t04.many.frag # found chain 1zpvA in template set T0547 571 :MDILNERIS 1zpvA 60 :RNEFEAFGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79957 # 1v4vA.571.324 read from T0547.t04.many.frag # found chain 1v4vA in training set T0547 571 :MDILNERIS 1v4vA 325 :YRVVKGLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79958 1b7yA expands to /projects/compbio/data/pdb/1b7y.pdb.gz 1b7yA:# 1b7yA.571.290 read from T0547.t04.many.frag # adding 1b7yA to template set # found chain 1b7yA in template set T0547 571 :MDILNERIS 1b7yA 291 :FQAVDAYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79959 # 1kyqA.572.245 read from T0547.t04.many.frag # found chain 1kyqA in template set T0547 572 :DILNERISN 1kyqA 246 :DLFKVMFQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79960 # 1ta8A.572.268 read from T0547.t04.many.frag # found chain 1ta8A in training set T0547 572 :DILNERISN 1ta8A 269 :AYIEEYHEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79961 # 1k6kA.572.55 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 572 :DILNERISN 1k6kA 56 :QELEAFIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79962 # 1q7zA.572.545 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 572 :DILNERISN 1q7zA 546 :KTLNATLVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=79963 # 1e0tA.572.430 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 572 :DILNERISN 1e0tA 431 :RLGKELALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79964 # 1ka8A.572.60 read from T0547.t04.many.frag # found chain 1ka8A in template set T0547 572 :DILNERISN 1ka8A 61 :LGLPVMLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79965 # 1v74B.572.75 read from T0547.t04.many.frag # found chain 1v74B in template set T0547 572 :DILNERISN 1v74B 76 :VEVRSILEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79966 # 1r9jA.572.648 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 572 :DILNERISN 1r9jA 647 :RTGRELAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79967 # 1iu4A.572.147 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)D572 because of BadResidue code BAD_PEPTIDE in next template residue (1iu4A)N149 Warning: unaligning (T0547)I573 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)N149 T0547 574 :LNERISN 1iu4A 150 :LKKELAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=79968 # 1hlvA.572.101 read from T0547.t04.many.frag # found chain 1hlvA in template set T0547 572 :DILNERISN 1hlvA 102 :EKALRIAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79969 # 2igd.572.32 read from T0547.t04.many.frag # found chain 2igd in training set T0547 572 :DILNERISN 2igd 33 :KAFKQYAND Number of specific fragments extracted= 1 number of extra gaps= 0 total=79970 # 2c5uA.572.323 read from T0547.t04.many.frag # found chain 2c5uA in template set T0547 572 :DILNERISN 2c5uA 323 :MEAQGVAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79971 # 1no1A.572.46 read from T0547.t04.many.frag # found chain 1no1A in template set T0547 572 :DILNERISN 1no1A 47 :NNLTDYAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=79972 # 1g3kA.572.131 read from T0547.t04.many.frag # found chain 1g3kA in template set Warning: unaligning (T0547)N580 (1g3kA)N140 because G (3-10) conformation "forbidden" or filtered. T0547 572 :DILNERIS 1g3kA 132 :SAARALVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=79973 # 2akaB.572.247 read from T0547.t04.many.frag # found chain 2akaB in template set T0547 572 :DILNERISN 2akaB 253 :AAERKFFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79974 # 1unnC.572.77 read from T0547.t04.many.frag # found chain 1unnC in template set T0547 572 :DILNERISN 1unnC 314 :ATARKTWDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79975 # 1u7kA.572.38 read from T0547.t04.many.frag # found chain 1u7kA in template set T0547 572 :DILNERISN 1u7kA 39 :ALIESVLTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79976 # 1l3lA.572.206 read from T0547.t04.many.frag # found chain 1l3lA in training set T0547 572 :DILNERISN 1l3lA 207 :VKLREAMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79977 # 1b7yA.572.291 read from T0547.t04.many.frag # found chain 1b7yA in template set T0547 572 :DILNERISN 1b7yA 292 :QAVDAYRER Number of specific fragments extracted= 1 number of extra gaps= 0 total=79978 # 1gx5A.572.482 read from T0547.t04.many.frag # found chain 1gx5A in template set T0547 572 :DILNERISN 1gx5A 483 :NRVASCLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79979 # 1h54A.572.275 read from T0547.t04.many.frag # found chain 1h54A in template set T0547 572 :DILNERISN 1h54A 276 :AAMHQLSDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79980 # 1w6kA.572.294 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 572 :DILNERISN 1w6kA 295 :VVYALLNLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=79981 # 1w2yA.572.219 read from T0547.t04.many.frag # found chain 1w2yA in training set T0547 572 :DILNERISN 1w2yA 220 :KKLEECYKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79982 # 1k8kE.572.92 read from T0547.t04.many.frag # found chain 1k8kE in template set T0547 572 :DILNERISN 1k8kE 93 :KEMYTLGIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79983 # 1u84A.572.51 read from T0547.t04.many.frag # found chain 1u84A in training set T0547 572 :DILNERISN 1u84A 49 :ARIQSIYEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79984 # 2a84A.572.232 read from T0547.t04.many.frag # found chain 2a84A in training set T0547 572 :DILNERISN 2a84A 233 :DAARAVLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79985 # 1ng6A.572.101 read from T0547.t04.many.frag # found chain 1ng6A in training set T0547 572 :DILNERISN 1ng6A 102 :TIVNETIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79986 # 1obfO.572.260 read from T0547.t04.many.frag # found chain 1obfO in template set T0547 572 :DILNERISN 1obfO 261 :GILKAASEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=79987 # 1zpvA.572.63 read from T0547.t04.many.frag # found chain 1zpvA in template set T0547 572 :DILNERISN 1zpvA 61 :NEFEAFGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79988 # 2a6aA.572.180 read from T0547.t04.many.frag # found chain 2a6aA in template set T0547 572 :DILNERISN 2a6aA 169 :EESERLFRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=79989 # 1kyqA.573.246 read from T0547.t04.many.frag # found chain 1kyqA in template set T0547 573 :ILNERISNS 1kyqA 247 :LFKVMFQEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=79990 # 1ta8A.573.269 read from T0547.t04.many.frag # found chain 1ta8A in training set T0547 573 :ILNERISNS 1ta8A 270 :YIEEYHEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=79991 # 1e0tA.573.431 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 573 :ILNERISNS 1e0tA 432 :LGKELALQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=79992 # 1q7zA.573.546 read from T0547.t04.many.frag # found chain 1q7zA in training set T0547 573 :ILNERISNS 1q7zA 547 :TLNATLVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79993 # 1ka8A.573.61 read from T0547.t04.many.frag # found chain 1ka8A in template set T0547 573 :ILNERISNS 1ka8A 62 :GLPVMLKEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=79994 # 1k6kA.573.56 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 573 :ILNERISNS 1k6kA 57 :ELEAFIEQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=79995 # 1v74B.573.76 read from T0547.t04.many.frag # found chain 1v74B in template set T0547 573 :ILNERISNS 1v74B 77 :EVRSILEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=79996 # 2c5uA.573.324 read from T0547.t04.many.frag # found chain 2c5uA in template set T0547 573 :ILNERISNS 2c5uA 324 :EAQGVAKGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=79997 # 1hlvA.573.102 read from T0547.t04.many.frag # found chain 1hlvA in template set T0547 573 :ILNERISNS 1hlvA 103 :KALRIAEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=79998 # 1iu4A.573.148 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)I573 because of BadResidue code BAD_PEPTIDE at template residue (1iu4A)N149 T0547 574 :LNERISNS 1iu4A 150 :LKKELANG Number of specific fragments extracted= 1 number of extra gaps= 1 total=79999 # 2igd.573.33 read from T0547.t04.many.frag # found chain 2igd in training set T0547 573 :ILNERISNS 2igd 34 :AFKQYANDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80000 # 1r9jA.573.649 read from T0547.t04.many.frag # found chain 1r9jA in template set T0547 573 :ILNERISNS 1r9jA 648 :TGRELAKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80001 # 1g3kA.573.132 read from T0547.t04.many.frag # found chain 1g3kA in template set Warning: unaligning (T0547)N580 (1g3kA)N140 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S581 (1g3kA)T141 because Y (epsilon') conformation "forbidden" or filtered. T0547 573 :ILNERIS 1g3kA 133 :AARALVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=80002 # 2akaB.573.248 read from T0547.t04.many.frag # found chain 2akaB in template set T0547 573 :ILNERISNS 2akaB 254 :AERKFFLSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80003 # 1no1A.573.47 read from T0547.t04.many.frag # found chain 1no1A in template set T0547 573 :ILNERISNS 1no1A 48 :NLTDYAKVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80004 # 1ng6A.573.102 read from T0547.t04.many.frag # found chain 1ng6A in training set T0547 573 :ILNERISNS 1ng6A 103 :IVNETIAEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80005 # 1gx5A.573.483 read from T0547.t04.many.frag # found chain 1gx5A in template set T0547 573 :ILNERISNS 1gx5A 484 :RVASCLRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80006 # 1l3lA.573.207 read from T0547.t04.many.frag # found chain 1l3lA in training set T0547 573 :ILNERISNS 1l3lA 208 :KLREAMKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80007 # 1dk0A.573.149 read from T0547.t04.many.frag # found chain 1dk0A in training set T0547 573 :ILNERISNS 1dk0A 150 :ALNGILDDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80008 # 1b7yA.573.292 read from T0547.t04.many.frag # found chain 1b7yA in template set T0547 573 :ILNERISNS 1b7yA 293 :AVDAYRERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80009 # 1h54A.573.276 read from T0547.t04.many.frag # found chain 1h54A in template set T0547 573 :ILNERISNS 1h54A 277 :AMHQLSDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80010 # 1w6kA.573.295 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 573 :ILNERISNS 1w6kA 296 :VYALLNLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80011 # 2a6aA.573.181 read from T0547.t04.many.frag # found chain 2a6aA in template set T0547 573 :ILNERISNS 2a6aA 170 :ESERLFREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80012 # 1bh9B.573.55 read from T0547.t04.many.frag # found chain 1bh9B in template set T0547 573 :ILNERISNS 1bh9B 168 :EALDVCEKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=80013 # 2a84A.573.233 read from T0547.t04.many.frag # found chain 2a84A in training set T0547 573 :ILNERISNS 2a84A 234 :AARAVLDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80014 # 1u7kA.573.39 read from T0547.t04.many.frag # found chain 1u7kA in template set T0547 573 :ILNERISNS 1u7kA 40 :LIESVLTTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80015 # 1qwtA.573.238 read from T0547.t04.many.frag # found chain 1qwtA in template set T0547 573 :ILNERISNS 1qwtA 411 :YLQDLVEGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=80016 # 1omhA.573.279 read from T0547.t04.many.frag # found chain 1omhA in template set T0547 573 :ILNERISNS 1omhA 280 :EWQATAKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80017 # 1obfO.573.261 read from T0547.t04.many.frag # found chain 1obfO in template set Warning: unaligning (T0547)N580 (1obfO)G269 because Y (epsilon') conformation "forbidden" or filtered. T0547 573 :ILNERIS 1obfO 262 :ILKAASE T0547 581 :S 1obfO 270 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=80019 # 1ldjA.573.716 read from T0547.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0547)N575 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1ldjA)T736 Warning: unaligning (T0547)E576 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ldjA)T736 Warning: unaligning (T0547)R577 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1ldjA)L738 Warning: unaligning (T0547)I578 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ldjA)L738 T0547 573 :IL 1ldjA 733 :EV T0547 579 :SNS 1ldjA 739 :SSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=80021 # 1kyqA.574.247 read from T0547.t04.many.frag # found chain 1kyqA in template set T0547 574 :LNERISNSK 1kyqA 248 :FKVMFQEQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80022 # 1ta8A.574.270 read from T0547.t04.many.frag # found chain 1ta8A in training set T0547 574 :LNERISNSK 1ta8A 271 :IEEYHEKRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80023 # 2c5uA.574.325 read from T0547.t04.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)K582 (2c5uA)G333 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 2c5uA 325 :AQGVAKGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=80024 # 1g3kA.574.133 read from T0547.t04.many.frag # found chain 1g3kA in template set T0547 574 :LNERISNSK 1g3kA 134 :ARALVENTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80025 # 1ka8A.574.62 read from T0547.t04.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)K582 (1ka8A)G71 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1ka8A 63 :LPVMLKEY Number of specific fragments extracted= 1 number of extra gaps= 1 total=80026 # 1hlvA.574.103 read from T0547.t04.many.frag # found chain 1hlvA in template set T0547 574 :LNERISNSK 1hlvA 104 :ALRIAEELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80027 # 1v74B.574.77 read from T0547.t04.many.frag # found chain 1v74B in template set T0547 574 :LNERISNSK 1v74B 78 :VRSILEKFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80028 # 1bh9B.574.56 read from T0547.t04.many.frag # found chain 1bh9B in template set T0547 574 :LNERISNSK 1bh9B 169 :ALDVCEKWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80029 # 2igd.574.34 read from T0547.t04.many.frag # found chain 2igd in training set Warning: unaligning (T0547)K582 (2igd)G43 because T (delta_L) conformation "forbidden" or filtered. T0547 574 :LNERISNS 2igd 35 :FKQYANDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=80030 # 2akaB.574.249 read from T0547.t04.many.frag # found chain 2akaB in template set T0547 574 :LNERISNSK 2akaB 255 :ERKFFLSHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=80031 # 1ng6A.574.103 read from T0547.t04.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)S581 (1ng6A)V111 because G (3-10) conformation "forbidden" or filtered. T0547 574 :LNERISN 1ng6A 104 :VNETIAE T0547 582 :K 1ng6A 112 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=80033 # 1q7zA.574.547 read from T0547.t04.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)K582 (1q7zA)E556 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1q7zA 548 :LNATLVIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=80034 # 1e0tA.574.432 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 574 :LNERISNSK 1e0tA 433 :GKELALQSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80035 # 1gx5A.574.484 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)K582 (1gx5A)G493 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1gx5A 485 :VASCLRKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=80036 # 1iu4A.574.149 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)K582 (1iu4A)N158 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1iu4A 150 :LKKELANG Number of specific fragments extracted= 1 number of extra gaps= 1 total=80037 # 1h54A.574.277 read from T0547.t04.many.frag # found chain 1h54A in template set T0547 574 :LNERISNSK 1h54A 278 :MHQLSDKVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80038 # 2a84A.574.234 read from T0547.t04.many.frag # found chain 2a84A in training set T0547 574 :LNERISNSK 2a84A 235 :ARAVLDAAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=80039 # 1tfr.574.270 read from T0547.t04.many.frag # found chain 1tfr in template set T0547 574 :LNERISNSK 1tfr 271 :IVNYYNSYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80040 # 1dk0A.574.150 read from T0547.t04.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)K582 (1dk0A)G159 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1dk0A 151 :LNGILDDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=80041 # 2a6aA.574.182 read from T0547.t04.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)S581 (2a6aA)K178 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISN 2a6aA 171 :SERLFRE T0547 582 :K 2a6aA 179 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=80043 # 1omhA.574.280 read from T0547.t04.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)S581 (1omhA)L288 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1omhA)G289 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISN 1omhA 281 :WQATAKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=80044 # 1ldjA.574.717 read from T0547.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0547)N575 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1ldjA)T736 Warning: unaligning (T0547)E576 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ldjA)T736 Warning: unaligning (T0547)R577 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1ldjA)L738 Warning: unaligning (T0547)I578 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ldjA)L738 T0547 574 :L 1ldjA 734 :V T0547 579 :SNSK 1ldjA 739 :SSRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=80046 # 2bl8A.574.57 read from T0547.t04.many.frag # found chain 2bl8A in training set Warning: unaligning (T0547)K582 (2bl8A)K66 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 2bl8A 58 :LYFTAYTN Number of specific fragments extracted= 1 number of extra gaps= 1 total=80047 # 1l3lA.574.208 read from T0547.t04.many.frag # found chain 1l3lA in training set T0547 574 :LNERISNSK 1l3lA 209 :LREAMKRFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80048 # 1b7yA.574.293 read from T0547.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0547)S581 (1b7yA)L301 because G (3-10) conformation "forbidden" or filtered. T0547 574 :LNERISN 1b7yA 294 :VDAYRER T0547 582 :K 1b7yA 302 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=80050 # 1koe.574.26 read from T0547.t04.many.frag # found chain 1koe in training set T0547 574 :LNERISNSK 1koe 164 :CFQQARAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80051 # 1yqhA.574.29 read from T0547.t04.many.frag # found chain 1yqhA in training set Warning: unaligning (T0547)K582 (1yqhA)G35 because T (delta_L) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1yqhA 27 :AIEVVQQS Number of specific fragments extracted= 1 number of extra gaps= 1 total=80052 # 1k6kA.574.57 read from T0547.t04.many.frag # found chain 1k6kA in training set T0547 574 :LNERISNSK 1k6kA 58 :LEAFIEQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80053 # 1w6kA.574.296 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 574 :LNERISNSK 1w6kA 297 :YALLNLYEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80054 # 1qwtA.574.239 read from T0547.t04.many.frag # found chain 1qwtA in template set T0547 574 :LNERISNSK 1qwtA 412 :LQDLVEGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80055 # 1e0tA.575.433 read from T0547.t04.many.frag # found chain 1e0tA in template set T0547 575 :NERISNSKL 1e0tA 434 :KELALQSGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80056 # 1ng6A.575.104 read from T0547.t04.many.frag # found chain 1ng6A in training set T0547 575 :NERISNSKL 1ng6A 105 :NETIAEVGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80057 # 2c5uA.575.326 read from T0547.t04.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)K582 (2c5uA)G333 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 2c5uA 326 :QGVAKGA T0547 583 :L 2c5uA 334 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=80059 # 2igd.575.35 read from T0547.t04.many.frag # found chain 2igd in training set T0547 575 :NERISNSKL 2igd 36 :KQYANDNGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80060 # 1kyqA.575.248 read from T0547.t04.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)K582 (1kyqA)N256 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L583 (1kyqA)C257 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1kyqA 249 :KVMFQEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=80061 # 1ka8A.575.63 read from T0547.t04.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)K582 (1ka8A)G71 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1ka8A 64 :PVMLKEY T0547 583 :L 1ka8A 72 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=80063 # 1g3kA.575.134 read from T0547.t04.many.frag # found chain 1g3kA in template set T0547 575 :NERISNSKL 1g3kA 135 :RALVENTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80064 # 1tfr.575.271 read from T0547.t04.many.frag # found chain 1tfr in template set T0547 575 :NERISNSKL 1tfr 272 :VNYYNSYKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80065 # 1ta8A.575.271 read from T0547.t04.many.frag # found chain 1ta8A in training set T0547 575 :NERISNSKL 1ta8A 272 :EEYHEKRST Number of specific fragments extracted= 1 number of extra gaps= 0 total=80066 # 1bh9B.575.57 read from T0547.t04.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)K582 (1bh9B)G177 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1bh9B 170 :LDVCEKW T0547 583 :L 1bh9B 178 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=80068 # 1iu4A.575.150 read from T0547.t04.many.frag # found chain 1iu4A in template set Warning: unaligning (T0547)K582 (1iu4A)N158 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1iu4A 151 :KKELANG T0547 583 :L 1iu4A 159 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=80070 # 1q7zA.575.548 read from T0547.t04.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)K582 (1q7zA)E556 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1q7zA 549 :NATLVIL T0547 583 :L 1q7zA 557 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=80072 # 1v74B.575.78 read from T0547.t04.many.frag # found chain 1v74B in template set Warning: unaligning (T0547)L583 because last residue in template chain is (1v74B)L87 T0547 575 :NERISNSK 1v74B 79 :RSILEKFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80073 # 2akaB.575.250 read from T0547.t04.many.frag # found chain 2akaB in template set T0547 575 :NERISNSKL 2akaB 256 :RKFFLSHPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80074 # 2a6aA.575.183 read from T0547.t04.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)S581 (2a6aA)K178 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISN 2a6aA 172 :ERLFRE T0547 582 :KL 2a6aA 179 :KT Number of specific fragments extracted= 2 number of extra gaps= 1 total=80076 # 1gx5A.575.485 read from T0547.t04.many.frag # found chain 1gx5A in template set T0547 575 :NERISNSKL 1gx5A 486 :ASCLRKLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80077 # 1hlvA.575.104 read from T0547.t04.many.frag # found chain 1hlvA in template set Warning: unaligning (T0547)K582 (1hlvA)G112 because T (delta_L) conformation "forbidden" or filtered. T0547 575 :NERISNS 1hlvA 105 :LRIAEEL T0547 583 :L 1hlvA 113 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=80079 # 2bl8A.575.58 read from T0547.t04.many.frag # found chain 2bl8A in training set T0547 575 :NERISNSKL 2bl8A 59 :YFTAYTNKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80080 # 1h54A.575.278 read from T0547.t04.many.frag # found chain 1h54A in template set T0547 575 :NERISNSKL 1h54A 279 :HQLSDKVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80081 2hddA expands to /projects/compbio/data/pdb/2hdd.pdb.gz 2hddA:Skipped atom 1253, because occupancy 0.400 <= existing 0.600 in 2hddA Skipped atom 1255, because occupancy 0.400 <= existing 0.600 in 2hddA Skipped atom 1257, because occupancy 0.400 <= existing 0.600 in 2hddA Skipped atom 1259, because occupancy 0.400 <= existing 0.600 in 2hddA # 2hddA.575.18 read from T0547.t04.many.frag # adding 2hddA to template set # found chain 2hddA in template set T0547 575 :NERISNSKL 2hddA 17 :KREFNENRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80082 # 1dzkA.575.132 read from T0547.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)K582 (1dzkA)G140 because T (delta_L) conformation "forbidden" or filtered. T0547 575 :NERISNS 1dzkA 133 :KEVTREN T0547 583 :L 1dzkA 141 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=80084 # 1yqhA.575.30 read from T0547.t04.many.frag # found chain 1yqhA in training set T0547 575 :NERISNSKL 1yqhA 28 :IEVVQQSGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80085 # 2a84A.575.235 read from T0547.t04.many.frag # found chain 2a84A in training set T0547 575 :NERISNSKL 2a84A 236 :RAVLDAAPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80086 1cf7B expands to /projects/compbio/data/pdb/1cf7.pdb.gz 1cf7B:# 1cf7B.575.38 read from T0547.t04.many.frag # adding 1cf7B to template set # found chain 1cf7B in template set T0547 575 :NERISNSKL 1cf7B 98 :VSEFTNSNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80087 1bazA expands to /projects/compbio/data/pdb/1baz.pdb.gz 1bazA:# 1bazA.575.22 read from T0547.t04.many.frag # adding 1bazA to template set # found chain 1bazA in template set Warning: unaligning (T0547)K582 (1bazA)G30 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1bazA 23 :RKVAEEN T0547 583 :L 1bazA 31 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=80089 # 1pc6A.575.116 read from T0547.t04.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)K582 (1pc6A)G124 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1pc6A 117 :QAFGTER T0547 583 :L 1pc6A 125 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=80091 1q08A expands to /projects/compbio/data/pdb/1q08.pdb.gz 1q08A:# 1q08A.575.25 read from T0547.t04.many.frag # adding 1q08A to template set # found chain 1q08A in template set T0547 575 :NERISNSKL 1q08A 68 :LSIRIDPEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80092 # 1omhA.575.281 read from T0547.t04.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)K582 (1omhA)G289 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1omhA 282 :QATAKEL T0547 583 :L 1omhA 290 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=80094 # 1wpuA.575.53 read from T0547.t04.many.frag # found chain 1wpuA in training set Warning: unaligning (T0547)K582 (1wpuA)G62 because T (delta_L) conformation "forbidden" or filtered. T0547 575 :NERISNS 1wpuA 55 :ETASKKS T0547 583 :L 1wpuA 63 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=80096 # 1q79A.575.467 read from T0547.t04.many.frag # found chain 1q79A in template set T0547 575 :NERISNSKL 1q79A 468 :YRQAINSKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=80097 # 1ng6A.576.105 read from T0547.t04.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)K582 (1ng6A)G112 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1ng6A 106 :ETIAEV T0547 583 :LV 1ng6A 113 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=80099 # 1tfr.576.272 read from T0547.t04.many.frag # found chain 1tfr in template set T0547 576 :ERISNSKLV 1tfr 273 :NYYNSYKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=80100 # 1e0tA.576.434 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)K582 (1e0tA)G441 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)V584 (1e0tA)A443 because Y (epsilon') conformation "forbidden" or filtered. T0547 576 :ERISNS 1e0tA 435 :ELALQS T0547 583 :L 1e0tA 442 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=80102 # 1bazA.576.23 read from T0547.t04.many.frag # found chain 1bazA in template set Warning: unaligning (T0547)S581 (1bazA)N29 because G (3-10) conformation "forbidden" or filtered. T0547 576 :ERISN 1bazA 24 :KVAEE T0547 582 :KLV 1bazA 30 :GRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=80104 # 2bl8A.576.59 read from T0547.t04.many.frag # found chain 2bl8A in training set T0547 576 :ERISNSKLV 2bl8A 60 :FTAYTNKIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80105 # 1q7zA.576.549 read from T0547.t04.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)K582 (1q7zA)E556 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1q7zA 550 :ATLVIL T0547 583 :LV 1q7zA 557 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=80107 # 2igd.576.36 read from T0547.t04.many.frag # found chain 2igd in training set T0547 576 :ERISNSKLV 2igd 37 :QYANDNGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80108 # 1gx5A.576.486 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)K582 (1gx5A)G493 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1gx5A 487 :SCLRKL T0547 583 :LV 1gx5A 494 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=80110 # 1kxu.576.266 read from T0547.t04.many.frag # found chain 1kxu in template set Warning: unaligning (T0547)N580 (1kxu)K261 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1kxu)E263 because E (beta_S) conformation "forbidden" or filtered. T0547 576 :ERIS 1kxu 257 :NLVK T0547 581 :S 1kxu 262 :Y T0547 583 :LV 1kxu 264 :PP Number of specific fragments extracted= 3 number of extra gaps= 2 total=80113 # 1bh9B.576.58 read from T0547.t04.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)K582 (1bh9B)G177 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1bh9B 171 :DVCEKW T0547 583 :LV 1bh9B 178 :EM Number of specific fragments extracted= 2 number of extra gaps= 1 total=80115 1qc7A expands to /projects/compbio/data/pdb/1qc7.pdb.gz 1qc7A:# 1qc7A.576.55 read from T0547.t04.many.frag # adding 1qc7A to template set # found chain 1qc7A in template set T0547 576 :ERISNSKLV 1qc7A 290 :DELEYMGPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80116 # 1q79A.576.468 read from T0547.t04.many.frag # found chain 1q79A in template set Warning: unaligning (T0547)K582 (1q79A)K475 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1q79A 469 :RQAINS T0547 583 :LV 1q79A 476 :MF Number of specific fragments extracted= 2 number of extra gaps= 1 total=80118 # 2c5uA.576.327 read from T0547.t04.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)K582 (2c5uA)G333 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 2c5uA 327 :GVAKGA T0547 583 :LV 2c5uA 334 :MD Number of specific fragments extracted= 2 number of extra gaps= 1 total=80120 # 2hddA.576.19 read from T0547.t04.many.frag # found chain 2hddA in template set T0547 576 :ERISNSKLV 2hddA 18 :REFNENRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80121 # 1ug3A.576.314 read from T0547.t04.many.frag # found chain 1ug3A in template set Warning: unaligning (T0547)K582 (1ug3A)D1554 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1ug3A 1548 :DALYDE T0547 583 :LV 1ug3A 1555 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=80123 # 1dzkA.576.133 read from T0547.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)K582 (1dzkA)G140 because T (delta_L) conformation "forbidden" or filtered. T0547 576 :ERISNS 1dzkA 134 :EVTREN T0547 583 :LV 1dzkA 141 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=80125 # 1wpuA.576.54 read from T0547.t04.many.frag # found chain 1wpuA in training set Warning: unaligning (T0547)K582 (1wpuA)G62 because T (delta_L) conformation "forbidden" or filtered. T0547 576 :ERISNS 1wpuA 56 :TASKKS T0547 583 :LV 1wpuA 63 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=80127 # 1eyqA.576.115 read from T0547.t04.many.frag # found chain 1eyqA in template set Warning: unaligning (T0547)K582 (1eyqA)G122 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1eyqA 116 :AHLKSV T0547 583 :LV 1eyqA 123 :TY Number of specific fragments extracted= 2 number of extra gaps= 1 total=80129 # 1q08A.576.26 read from T0547.t04.many.frag # found chain 1q08A in template set T0547 576 :ERISNSKLV 1q08A 69 :SIRIDPEHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80130 # 1fo8A.576.257 read from T0547.t04.many.frag # found chain 1fo8A in training set T0547 576 :ERISNSKLV 1fo8A 362 :ARVYGAPQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80131 # 1l8aA.576.853 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)S581 (1l8aA)R859 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1l8aA)G860 because T (delta_L) conformation "forbidden" or filtered. T0547 576 :ERISN 1l8aA 854 :GELAK T0547 583 :LV 1l8aA 861 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=80133 # 1ta8A.576.272 read from T0547.t04.many.frag # found chain 1ta8A in training set T0547 576 :ERISNSKLV 1ta8A 273 :EYHEKRSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80134 # 1ka8A.576.64 read from T0547.t04.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)S581 (1ka8A)Y70 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1ka8A)G71 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISN 1ka8A 65 :VMLKE T0547 583 :LV 1ka8A 72 :LN Number of specific fragments extracted= 2 number of extra gaps= 1 total=80136 # 1sqwA.576.49 read from T0547.t04.many.frag # found chain 1sqwA in template set T0547 576 :ERISNSKLV 1sqwA 50 :KIMKLAANI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80137 # 1g3kA.576.135 read from T0547.t04.many.frag # found chain 1g3kA in template set Warning: unaligning (T0547)S581 (1g3kA)T141 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1g3kA)E142 because G (3-10) conformation "forbidden" or filtered. T0547 576 :ERISN 1g3kA 136 :ALVEN T0547 583 :LV 1g3kA 143 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=80139 # 2a6aA.576.184 read from T0547.t04.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)S581 (2a6aA)K178 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V584 (2a6aA)I181 because Y (epsilon') conformation "forbidden" or filtered. T0547 576 :ERISN 2a6aA 173 :RLFRE T0547 582 :KL 2a6aA 179 :KT Number of specific fragments extracted= 2 number of extra gaps= 2 total=80141 # 1omhA.576.282 read from T0547.t04.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)K582 (1omhA)G289 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1omhA 283 :ATAKEL T0547 583 :LV 1omhA 290 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=80143 # 1yqhA.576.31 read from T0547.t04.many.frag # found chain 1yqhA in training set Warning: unaligning (T0547)N580 (1yqhA)Q33 because G (3-10) conformation "forbidden" or filtered. T0547 576 :ERIS 1yqhA 29 :EVVQ T0547 581 :SKLV 1yqhA 34 :SGVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=80145 # 1hyp.576.45 read from T0547.t04.many.frag # found chain 1hyp in training set T0547 576 :ERISNSKLV 1hyp 46 :IQLRALGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80146 # 2cpgA.576.18 read from T0547.t04.many.frag # found chain 2cpgA in training set Warning: unaligning (T0547)K582 (2cpgA)G25 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 2cpgA 19 :KMAREM T0547 583 :LV 2cpgA 26 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=80148 # 1ng6A.577.106 read from T0547.t04.many.frag # found chain 1ng6A in training set T0547 577 :RISNSKLVN 1ng6A 107 :TIAEVGASS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80149 # 1tfr.577.273 read from T0547.t04.many.frag # found chain 1tfr in template set Warning: unaligning (T0547)N585 (1tfr)P282 because P (beta_P) conformation "forbidden" or filtered. T0547 577 :RISNSKLV 1tfr 274 :YYNSYKLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=80150 # 1ug3A.577.315 read from T0547.t04.many.frag # found chain 1ug3A in template set Warning: unaligning (T0547)N585 (1ug3A)K1557 because P (beta_P) conformation "forbidden" or filtered. T0547 577 :RISNSKLV 1ug3A 1549 :ALYDEDVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=80151 # 1l8aA.577.854 read from T0547.t04.many.frag # found chain 1l8aA in template set T0547 577 :RISNSKLVN 1l8aA 855 :ELAKRGEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=80152 # 1eyqA.577.116 read from T0547.t04.many.frag # found chain 1eyqA in template set Warning: unaligning (T0547)N585 (1eyqA)G125 because P (beta_P) conformation "forbidden" or filtered. T0547 577 :RISNSKLV 1eyqA 117 :HLKSVGTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=80153 # 1bazA.577.24 read from T0547.t04.many.frag # found chain 1bazA in template set Warning: unaligning (T0547)K582 (1bazA)G30 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNS 1bazA 25 :VAEEN T0547 583 :LVN 1bazA 31 :RSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=80155 # 1kxu.577.267 read from T0547.t04.many.frag # found chain 1kxu in template set T0547 577 :RISNSKLVN 1kxu 258 :LVKKYEPPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80156 # 1vdkA.577.437 read from T0547.t04.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)K582 (1vdkA)G443 because T (delta_L) conformation "forbidden" or filtered. T0547 577 :RISNS 1vdkA 438 :AALEL T0547 583 :LVN 1vdkA 444 :YLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=80158 # 1qc7A.577.56 read from T0547.t04.many.frag # found chain 1qc7A in template set Warning: unaligning (T0547)K582 (1qc7A)G296 because S (epsilon) conformation "forbidden" or filtered. T0547 577 :RISNS 1qc7A 291 :ELEYM T0547 583 :LVN 1qc7A 297 :PVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=80160 # 2bl8A.577.60 read from T0547.t04.many.frag # found chain 2bl8A in training set T0547 577 :RISNSKLVN 2bl8A 61 :TAYTNKIRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80161 # 1q79A.577.469 read from T0547.t04.many.frag # found chain 1q79A in template set T0547 577 :RISNSKLVN 1q79A 470 :QAINSKMFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80162 # 1e0tA.577.435 read from T0547.t04.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)K582 (1e0tA)G441 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1e0tA)H444 because Y (epsilon') conformation "forbidden" or filtered. T0547 577 :RISNS 1e0tA 436 :LALQS T0547 583 :LV 1e0tA 442 :LA Number of specific fragments extracted= 2 number of extra gaps= 2 total=80164 # 2cpgA.577.19 read from T0547.t04.many.frag # found chain 2cpgA in training set Warning: unaligning (T0547)K582 (2cpgA)G25 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNS 2cpgA 20 :MAREM T0547 583 :LVN 2cpgA 26 :LSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=80166 # 1q7zA.577.550 read from T0547.t04.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)S581 (1q7zA)L555 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1q7zA)E556 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V584 (1q7zA)K558 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 because last residue in template chain is (1q7zA)E559 T0547 577 :RISN 1q7zA 551 :TLVI T0547 583 :L 1q7zA 557 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=80168 # 1cf7B.577.21 read from T0547.t04.many.frag # found chain 1cf7B in template set Warning: unaligning (T0547)S581 (1cf7B)K85 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1cf7B)G86 because T (delta_L) conformation "forbidden" or filtered. T0547 577 :RISN 1cf7B 81 :KVQR T0547 583 :LVN 1cf7B 87 :TTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=80170 # 1q08A.577.27 read from T0547.t04.many.frag # found chain 1q08A in template set T0547 577 :RISNSKLVN 1q08A 70 :IRIDPEHHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80171 # 1sqwA.577.50 read from T0547.t04.many.frag # found chain 1sqwA in template set T0547 577 :RISNSKLVN 1sqwA 51 :IMKLAANIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80172 # 2hddA.577.20 read from T0547.t04.many.frag # found chain 2hddA in template set Warning: unaligning (T0547)N585 (2hddA)T27 because P (beta_P) conformation "forbidden" or filtered. T0547 577 :RISNSKLV 2hddA 19 :EFNENRYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=80173 # 2ahrA.577.181 read from T0547.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0547)K582 (2ahrA)G184 because T (delta_L) conformation "forbidden" or filtered. T0547 577 :RISNS 2ahrA 179 :AGVKN T0547 583 :LVN 2ahrA 185 :IPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=80175 # 1qgiA.577.212 read from T0547.t04.many.frag # found chain 1qgiA in training set T0547 577 :RISNSKLVN 1qgiA 213 :VVDTNKYNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80176 # 1guxA.577.163 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)S581 (1guxA)E539 because D (zeta) conformation "forbidden" or filtered. T0547 577 :RISN 1guxA 535 :FIKA T0547 582 :KLVN 1guxA 540 :GNLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=80178 # 1gx5A.577.487 read from T0547.t04.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)K582 (1gx5A)G493 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNS 1gx5A 488 :CLRKL T0547 583 :LVN 1gx5A 494 :VPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=80180 # 1hyp.577.46 read from T0547.t04.many.frag # found chain 1hyp in training set T0547 577 :RISNSKLVN 1hyp 47 :QLRALGILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80181 # 2igd.577.37 read from T0547.t04.many.frag # found chain 2igd in training set Warning: unaligning (T0547)N585 (2igd)G46 because Y (epsilon') conformation "forbidden" or filtered. T0547 577 :RISNSKLV 2igd 38 :YANDNGVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=80182 1y9bA expands to /projects/compbio/data/pdb/1y9b.pdb.gz 1y9bA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 284, because occupancy 0.500 <= existing 0.500 in 1y9bA Skipped atom 288, because occupancy 0.500 <= existing 0.500 in 1y9bA Skipped atom 290, because occupancy 0.500 <= existing 0.500 in 1y9bA Skipped atom 292, because occupancy 0.500 <= existing 0.500 in 1y9bA Skipped atom 294, because occupancy 0.500 <= existing 0.500 in 1y9bA Skipped atom 296, because occupancy 0.500 <= existing 0.500 in 1y9bA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1y9bA.577.22 read from T0547.t04.many.frag # adding 1y9bA to template set # found chain 1y9bA in template set T0547 577 :RISNSKLVN 1y9bA 23 :AAALAGMSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80183 # 1p35A.577.116 read from T0547.t04.many.frag # found chain 1p35A in template set Warning: unaligning (T0547)S581 (1p35A)H122 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1p35A)D123 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)V584 (1p35A)T125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1p35A)D126 because P (beta_P) conformation "forbidden" or filtered. T0547 577 :RISN 1p35A 118 :ILKS T0547 583 :L 1p35A 124 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=80185 # 1wpuA.577.55 read from T0547.t04.many.frag # found chain 1wpuA in training set Warning: unaligning (T0547)K582 (1wpuA)G62 because T (delta_L) conformation "forbidden" or filtered. T0547 577 :RISNS 1wpuA 57 :ASKKS T0547 583 :LVN 1wpuA 63 :VIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=80187 1nekD expands to /projects/compbio/data/pdb/1nek.pdb.gz 1nekD:# 1nekD.577.35 read from T0547.t04.many.frag # adding 1nekD to template set # found chain 1nekD in template set T0547 577 :RISNSKLVN 1nekD 36 :FFATSGELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80188 # 1m7gA.577.198 read from T0547.t04.many.frag # found chain 1m7gA in training set Warning: unaligning (T0547)K582 (1m7gA)G204 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNS 1m7gA 199 :YLDTK T0547 583 :LVN 1m7gA 205 :YLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=80190 # 1w6kA.577.299 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 577 :RISNSKLVN 1w6kA 300 :LNLYEHHHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80191 # 1ug3A.578.316 read from T0547.t04.many.frag # found chain 1ug3A in template set Warning: unaligning (T0547)N585 (1ug3A)K1557 because P (beta_P) conformation "forbidden" or filtered. T0547 578 :ISNSKLV 1ug3A 1550 :LYDEDVV T0547 586 :D 1ug3A 1558 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=80193 # 1l8aA.578.855 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)N585 (1l8aA)D863 because P (beta_P) conformation "forbidden" or filtered. T0547 578 :ISNSKLV 1l8aA 856 :LAKRGEI T0547 586 :D 1l8aA 864 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=80195 # 1vdkA.578.438 read from T0547.t04.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)N585 (1vdkA)T446 because P (beta_P) conformation "forbidden" or filtered. T0547 578 :ISNSKLV 1vdkA 439 :ALELGYL T0547 586 :D 1vdkA 447 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=80197 # 1cy5A.578.28 read from T0547.t04.many.frag # found chain 1cy5A in training set Warning: unaligning (T0547)K582 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0547 578 :ISNS 1cy5A 29 :MISD T0547 583 :LVND 1cy5A 34 :FLTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=80199 # 1ng6A.578.107 read from T0547.t04.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)K582 (1ng6A)G112 because L (left) conformation "forbidden" or filtered. T0547 578 :ISNS 1ng6A 108 :IAEV T0547 583 :LVND 1ng6A 113 :ASSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=80201 # 1tfr.578.274 read from T0547.t04.many.frag # found chain 1tfr in template set T0547 578 :ISNSKLVND 1tfr 275 :YNSYKLPPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80202 # 1kxu.578.268 read from T0547.t04.many.frag # found chain 1kxu in template set T0547 578 :ISNSKLVND 1kxu 259 :VKKYEPPRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80203 # 1eyqA.578.117 read from T0547.t04.many.frag # found chain 1eyqA in template set T0547 578 :ISNSKLVND 1eyqA 118 :LKSVGTYGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80204 # 2f6kA.578.281 read from T0547.t04.many.frag # found chain 2f6kA in template set Warning: unaligning (T0547)N580 (2f6kA)T284 because G (3-10) conformation "forbidden" or filtered. T0547 578 :IS 2f6kA 282 :LA T0547 581 :SKLVND 2f6kA 285 :TDLLTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=80206 # 1qc7A.578.57 read from T0547.t04.many.frag # found chain 1qc7A in template set Warning: unaligning (T0547)K582 (1qc7A)G296 because S (epsilon) conformation "forbidden" or filtered. T0547 578 :ISNS 1qc7A 292 :LEYM T0547 583 :LVND 1qc7A 297 :PVRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=80208 # 1sqwA.578.51 read from T0547.t04.many.frag # found chain 1sqwA in template set T0547 578 :ISNSKLVND 1sqwA 52 :MKLAANISG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80209 # 1guxA.578.164 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)N585 (1guxA)T543 because P (beta_P) conformation "forbidden" or filtered. T0547 578 :ISNSKLV 1guxA 536 :IKAEGNL T0547 586 :D 1guxA 544 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=80211 # 1q08A.578.28 read from T0547.t04.many.frag # found chain 1q08A in template set T0547 578 :ISNSKLVND 1q08A 71 :RIDPEHHTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=80212 # 2ahrA.578.182 read from T0547.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0547)K582 (2ahrA)G184 because T (delta_L) conformation "forbidden" or filtered. T0547 578 :ISNS 2ahrA 180 :GVKN T0547 583 :LVND 2ahrA 185 :IPKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=80214 # 1bazA.578.25 read from T0547.t04.many.frag # found chain 1bazA in template set Warning: unaligning (T0547)S581 (1bazA)N29 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1bazA)G30 because L (left) conformation "forbidden" or filtered. T0547 578 :ISN 1bazA 26 :AEE T0547 583 :LVND 1bazA 31 :RSVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=80216 # 4ubpA.578.24 read from T0547.t04.many.frag # found chain 4ubpA in training set Warning: unaligning (T0547)S581 (4ubpA)G27 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (4ubpA)N31 because P (beta_P) conformation "forbidden" or filtered. T0547 578 :ISN 4ubpA 24 :KAR T0547 582 :KLV 4ubpA 28 :LKL T0547 586 :D 4ubpA 32 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=80219 # 1cf7B.578.22 read from T0547.t04.many.frag # found chain 1cf7B in template set Warning: unaligning (T0547)K582 (1cf7B)G86 because T (delta_L) conformation "forbidden" or filtered. T0547 578 :ISNS 1cf7B 82 :VQRK T0547 583 :LVND 1cf7B 87 :TTSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=80221 # 1u20A.578.188 read from T0547.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)S581 (1u20A)L192 because G (3-10) conformation "forbidden" or filtered. T0547 578 :ISN 1u20A 189 :LRS T0547 582 :KLVND 1u20A 193 :KLLRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=80223 # 1nekD.578.36 read from T0547.t04.many.frag # found chain 1nekD in template set Warning: unaligning (T0547)K582 (1nekD)G41 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1nekD)T44 because P (beta_P) conformation "forbidden" or filtered. T0547 578 :ISNS 1nekD 37 :FATS T0547 583 :LV 1nekD 42 :EL T0547 586 :D 1nekD 45 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=80226 # 1w6kA.578.300 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 578 :ISNSKLVND 1w6kA 301 :NLYEHHHSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80227 # 1v4aA.578.355 read from T0547.t04.many.frag # found chain 1v4aA in template set Warning: unaligning (T0547)K582 (1v4aA)H360 because L (left) conformation "forbidden" or filtered. T0547 578 :ISNS 1v4aA 356 :IAEL T0547 583 :LVND 1v4aA 361 :LLSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=80229 2bwbA expands to /projects/compbio/data/pdb/2bwb.pdb.gz 2bwbA:# 2bwbA.578.13 read from T0547.t04.many.frag # adding 2bwbA to template set # found chain 2bwbA in template set T0547 578 :ISNSKLVND 2bwbA 339 :LNDMGFFDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80230 # 1qgiA.578.213 read from T0547.t04.many.frag # found chain 1qgiA in training set Warning: unaligning (T0547)N580 (1qgiA)T216 because P (beta_P) conformation "forbidden" or filtered. T0547 578 :IS 1qgiA 214 :VD T0547 581 :SKLVND 1qgiA 217 :NKYNKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=80232 # 1u9lA.578.40 read from T0547.t04.many.frag # found chain 1u9lA in template set T0547 578 :ISNSKLVND 1u9lA 392 :LLEIEGLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80233 # 2hddA.578.21 read from T0547.t04.many.frag # found chain 2hddA in template set T0547 578 :ISNSKLVND 2hddA 20 :FNENRYLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80234 # 2cpgA.578.20 read from T0547.t04.many.frag # found chain 2cpgA in training set Warning: unaligning (T0547)K582 (2cpgA)G25 because L (left) conformation "forbidden" or filtered. T0547 578 :ISNS 2cpgA 21 :AREM T0547 583 :LVND 2cpgA 26 :LSKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=80236 1xvhA expands to /projects/compbio/data/pdb/1xvh.pdb.gz 1xvhA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xvhA.578.88 read from T0547.t04.many.frag # adding 1xvhA to template set # found chain 1xvhA in template set T0547 578 :ISNSKLVND 1xvhA 89 :INGASDLNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80237 # 2bl8A.578.61 read from T0547.t04.many.frag # found chain 2bl8A in training set T0547 578 :ISNSKLVND 2bl8A 62 :AYTNKIRFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80238 # 1q79A.578.470 read from T0547.t04.many.frag # found chain 1q79A in template set T0547 578 :ISNSKLVND 1q79A 471 :AINSKMFEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80239 # 1zwwA.578.171 read from T0547.t04.many.frag # found chain 1zwwA in template set T0547 578 :ISNSKLVND 1zwwA 172 :KKRQGKIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80240 # 1l8aA.579.856 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)K582 (1l8aA)G860 because T (delta_L) conformation "forbidden" or filtered. T0547 579 :SNS 1l8aA 857 :AKR T0547 583 :LVNDK 1l8aA 861 :EIDKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=80242 # 1ug3A.579.317 read from T0547.t04.many.frag # found chain 1ug3A in template set T0547 579 :SNSKLVNDK 1ug3A 1551 :YDEDVVKED Number of specific fragments extracted= 1 number of extra gaps= 0 total=80243 # 1cy5A.579.29 read from T0547.t04.many.frag # found chain 1cy5A in training set Warning: unaligning (T0547)K582 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1cy5A)T36 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNS 1cy5A 30 :ISD T0547 583 :LV 1cy5A 34 :FL T0547 586 :DK 1cy5A 37 :IS Number of specific fragments extracted= 3 number of extra gaps= 2 total=80246 # 2f6kA.579.282 read from T0547.t04.many.frag # found chain 2f6kA in template set Warning: unaligning (T0547)S581 (2f6kA)T285 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (2f6kA)D286 because G (3-10) conformation "forbidden" or filtered. T0547 579 :SN 2f6kA 283 :AT T0547 583 :LVNDK 2f6kA 287 :LLTNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=80248 # 1vdkA.579.439 read from T0547.t04.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)N585 (1vdkA)T446 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNSKLV 1vdkA 440 :LELGYL T0547 586 :DK 1vdkA 447 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=80250 # 1u9lA.579.41 read from T0547.t04.many.frag # found chain 1u9lA in template set Warning: unaligning (T0547)K582 (1u9lA)E396 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNS 1u9lA 393 :LEI T0547 583 :LVNDK 1u9lA 397 :GLDEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=80252 # 1u20A.579.189 read from T0547.t04.many.frag # found chain 1u20A in template set T0547 579 :SNSKLVNDK 1u20A 190 :RSLKLLRED Number of specific fragments extracted= 1 number of extra gaps= 0 total=80253 # 1q08A.579.29 read from T0547.t04.many.frag # found chain 1q08A in template set T0547 579 :SNSKLVNDK 1q08A 72 :IDPEHHTCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80254 # 1j5wA.579.258 read from T0547.t04.many.frag # found chain 1j5wA in template set Warning: unaligning (T0547)K582 (1j5wA)G250 because L (left) conformation "forbidden" or filtered. T0547 579 :SNS 1j5wA 247 :DAR T0547 583 :LVNDK 1j5wA 251 :AISVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=80256 # 1x2iA.579.48 read from T0547.t04.many.frag # found chain 1x2iA in training set Warning: unaligning (T0547)S581 (1x2iA)V48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1x2iA)E49 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L583 (1x2iA)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 579 :SN 1x2iA 46 :MK T0547 584 :VNDK 1x2iA 51 :IGEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=80258 # 1qc7A.579.58 read from T0547.t04.many.frag # found chain 1qc7A in template set Warning: unaligning (T0547)K582 (1qc7A)G296 because S (epsilon) conformation "forbidden" or filtered. T0547 579 :SNS 1qc7A 293 :EYM T0547 583 :LVNDK 1qc7A 297 :PVRLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=80260 # 1kxu.579.269 read from T0547.t04.many.frag # found chain 1kxu in template set T0547 579 :SNSKLVNDK 1kxu 260 :KKYEPPRSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80261 # 1z3eB.579.43 read from T0547.t04.many.frag # found chain 1z3eB in training set Warning: unaligning (T0547)L583 (1z3eB)N290 because T (delta_L) conformation "forbidden" or filtered. T0547 579 :SNSK 1z3eB 286 :MKVR T0547 584 :VNDK 1z3eB 291 :LGRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=80263 # 1sqwA.579.52 read from T0547.t04.many.frag # found chain 1sqwA in template set T0547 579 :SNSKLVNDK 1sqwA 53 :KLAANISGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80264 # 1w6kA.579.301 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 579 :SNSKLVNDK 1w6kA 302 :LYEHHHSAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80265 # 4ubpA.579.25 read from T0547.t04.many.frag # found chain 4ubpA in training set Warning: unaligning (T0547)N580 (4ubpA)R26 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S581 (4ubpA)G27 because T (delta_L) conformation "forbidden" or filtered. T0547 579 :S 4ubpA 25 :A T0547 582 :KLVNDK 4ubpA 28 :LKLNYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=80267 # 1zwwA.579.172 read from T0547.t04.many.frag # found chain 1zwwA in template set T0547 579 :SNSKLVNDK 1zwwA 173 :KRQGKIPDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80268 # 1nekD.579.37 read from T0547.t04.many.frag # found chain 1nekD in template set Warning: unaligning (T0547)K582 (1nekD)G41 because S (epsilon) conformation "forbidden" or filtered. T0547 579 :SNS 1nekD 38 :ATS T0547 583 :LVNDK 1nekD 42 :ELTYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=80270 # 1v4aA.579.356 read from T0547.t04.many.frag # found chain 1v4aA in template set Warning: unaligning (T0547)K582 (1v4aA)H360 because L (left) conformation "forbidden" or filtered. T0547 579 :SNS 1v4aA 357 :AEL T0547 583 :LVNDK 1v4aA 361 :LLSEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=80272 # 1ng6A.579.108 read from T0547.t04.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)K582 (1ng6A)G112 because L (left) conformation "forbidden" or filtered. T0547 579 :SNS 1ng6A 109 :AEV T0547 583 :LVNDK 1ng6A 113 :ASSKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=80274 # 1xvhA.579.89 read from T0547.t04.many.frag # found chain 1xvhA in template set T0547 579 :SNSKLVNDK 1xvhA 90 :NGASDLNQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80275 # 1tfr.579.275 read from T0547.t04.many.frag # found chain 1tfr in template set T0547 579 :SNSKLVNDK 1tfr 276 :NSYKLPPRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80276 # 2bwbA.579.14 read from T0547.t04.many.frag # found chain 2bwbA in template set Warning: unaligning (T0547)N585 (2bwbA)D346 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNSKLV 2bwbA 340 :NDMGFF T0547 586 :DK 2bwbA 347 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=80278 # 1qrvA.579.23 read from T0547.t04.many.frag # found chain 1qrvA in template set Warning: unaligning (T0547)L583 (1qrvA)G29 because T (delta_L) conformation "forbidden" or filtered. T0547 579 :SNSK 1qrvA 25 :RENP T0547 584 :VNDK 1qrvA 30 :IKVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=80280 # 1eyqA.579.118 read from T0547.t04.many.frag # found chain 1eyqA in template set Warning: unaligning (T0547)K582 (1eyqA)G122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1eyqA)G125 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNS 1eyqA 119 :KSV T0547 583 :LV 1eyqA 123 :TY T0547 586 :DK 1eyqA 126 :DA Number of specific fragments extracted= 3 number of extra gaps= 2 total=80283 # 1l6xB.579.12 read from T0547.t04.many.frag # found chain 1l6xB in training set T0547 579 :SNSKLVNDK 1l6xB 18 :LHDPNLNEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80284 # 1guxA.579.165 read from T0547.t04.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)N585 (1guxA)T543 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNSKLV 1guxA 537 :KAEGNL T0547 586 :DK 1guxA 544 :RE Number of specific fragments extracted= 2 number of extra gaps= 1 total=80286 1vp7A expands to /projects/compbio/data/pdb/1vp7.pdb.gz 1vp7A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vp7A.579.45 read from T0547.t04.many.frag # adding 1vp7A to template set # found chain 1vp7A in template set Warning: unaligning (T0547)K582 (1vp7A)G37 because L (left) conformation "forbidden" or filtered. T0547 579 :SNS 1vp7A 34 :MEN T0547 583 :LVNDK 1vp7A 38 :TLPLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=80288 # 1ojhA.579.19 read from T0547.t04.many.frag # found chain 1ojhA in training set Warning: unaligning (T0547)N585 (1ojhA)S26 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNSKLV 1ojhA 20 :TQVQNM T0547 586 :DK 1ojhA 27 :HD Number of specific fragments extracted= 2 number of extra gaps= 1 total=80290 # 2ahrA.579.183 read from T0547.t04.many.frag # found chain 2ahrA in template set T0547 579 :SNSKLVNDK 2ahrA 181 :VKNGIPKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80291 # 1l8aA.580.857 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)K582 (1l8aA)G860 because T (delta_L) conformation "forbidden" or filtered. T0547 580 :NS 1l8aA 858 :KR T0547 583 :LVNDKQ 1l8aA 861 :EIDKKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=80293 # 2f6kA.580.283 read from T0547.t04.many.frag # found chain 2f6kA in template set T0547 580 :NSKLVNDKQ 2f6kA 284 :TTDLLTNEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80294 # 1cy5A.580.30 read from T0547.t04.many.frag # found chain 1cy5A in training set T0547 580 :NSKLVNDKQ 1cy5A 31 :SDGFLTISE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80295 # 1u9lA.580.42 read from T0547.t04.many.frag # found chain 1u9lA in template set Warning: unaligning (T0547)S581 (1u9lA)I395 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L583 (1u9lA)G397 because T (delta_L) conformation "forbidden" or filtered. T0547 580 :N 1u9lA 394 :E T0547 582 :K 1u9lA 396 :E T0547 584 :VNDKQ 1u9lA 398 :LDEPT Number of specific fragments extracted= 3 number of extra gaps= 2 total=80298 # 1j5wA.580.259 read from T0547.t04.many.frag # found chain 1j5wA in template set Warning: unaligning (T0547)N585 (1j5wA)S253 because P (beta_P) conformation "forbidden" or filtered. T0547 580 :NSKLV 1j5wA 248 :ARGAI T0547 586 :DKQ 1j5wA 254 :VSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=80300 # 1x2iA.580.49 read from T0547.t04.many.frag # found chain 1x2iA in training set Warning: unaligning (T0547)L583 (1x2iA)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 580 :NSK 1x2iA 47 :KVE T0547 584 :VNDKQ 1x2iA 51 :IGEKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=80302 # 1u20A.580.190 read from T0547.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)N585 (1u20A)R196 because P (beta_P) conformation "forbidden" or filtered. T0547 580 :NSKLV 1u20A 191 :SLKLL T0547 586 :DKQ 1u20A 197 :EDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=80304 # 2bwbA.580.15 read from T0547.t04.many.frag # found chain 2bwbA in template set Warning: unaligning (T0547)K582 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0547 580 :NS 2bwbA 341 :DM T0547 583 :LVNDKQ 2bwbA 344 :FFDFDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=80306 # 1v4aA.580.357 read from T0547.t04.many.frag # found chain 1v4aA in template set Warning: unaligning (T0547)K582 (1v4aA)H360 because L (left) conformation "forbidden" or filtered. T0547 580 :NS 1v4aA 358 :EL T0547 583 :LVNDKQ 1v4aA 361 :LLSEND Number of specific fragments extracted= 2 number of extra gaps= 1 total=80308 # 1q08A.580.30 read from T0547.t04.many.frag # found chain 1q08A in template set T0547 580 :NSKLVNDKQ 1q08A 73 :DPEHHTCQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80309 # 1qc7A.580.59 read from T0547.t04.many.frag # found chain 1qc7A in template set Warning: unaligning (T0547)K582 (1qc7A)G296 because S (epsilon) conformation "forbidden" or filtered. T0547 580 :NS 1qc7A 294 :YM T0547 583 :LVNDKQ 1qc7A 297 :PVRLKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=80311 # 1w6kA.580.302 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 580 :NSKLVNDKQ 1w6kA 303 :YEHHHSAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80312 # 1vdkA.580.440 read from T0547.t04.many.frag # found chain 1vdkA in training set T0547 580 :NSKLVNDKQ 1vdkA 441 :ELGYLTEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80313 # 4ubpA.580.26 read from T0547.t04.many.frag # found chain 4ubpA in training set T0547 580 :NSKLVNDKQ 4ubpA 26 :RGLKLNYPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80314 # 1z3eB.580.44 read from T0547.t04.many.frag # found chain 1z3eB in training set Warning: unaligning (T0547)N580 (1z3eB)K287 because G (3-10) conformation "forbidden" or filtered. T0547 581 :SKLVNDKQ 1z3eB 288 :VRNLGRKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=80315 # 1l6xB.580.13 read from T0547.t04.many.frag # found chain 1l6xB in training set Warning: unaligning (T0547)N580 (1l6xB)H19 because G (3-10) conformation "forbidden" or filtered. T0547 581 :SKLVNDKQ 1l6xB 20 :DPNLNEEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=80316 # 1ug3A.580.318 read from T0547.t04.many.frag # found chain 1ug3A in template set Warning: unaligning (T0547)K582 (1ug3A)D1554 because L (left) conformation "forbidden" or filtered. T0547 580 :NS 1ug3A 1552 :DE T0547 583 :LVNDKQ 1ug3A 1555 :VVKEDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=80318 # 1zwwA.580.173 read from T0547.t04.many.frag # found chain 1zwwA in template set T0547 580 :NSKLVNDKQ 1zwwA 174 :RQGKIPDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80319 # 1kxu.580.270 read from T0547.t04.many.frag # found chain 1kxu in template set Warning: unaligning (T0547)S581 (1kxu)Y262 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1kxu)R266 because P (beta_P) conformation "forbidden" or filtered. T0547 580 :N 1kxu 261 :K T0547 582 :KLV 1kxu 263 :EPP T0547 586 :DKQ 1kxu 267 :SEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=80322 # 1lm5A.580.143 read from T0547.t04.many.frag # found chain 1lm5A in training set T0547 580 :NSKLVNDKQ 1lm5A 2752 :RKGFIDGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80323 # 1qrvA.580.24 read from T0547.t04.many.frag # found chain 1qrvA in template set Warning: unaligning (T0547)K582 (1qrvA)P28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L583 (1qrvA)G29 because T (delta_L) conformation "forbidden" or filtered. T0547 580 :NS 1qrvA 26 :EN T0547 584 :VNDKQ 1qrvA 30 :IKVTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=80325 # 1vp7A.580.46 read from T0547.t04.many.frag # found chain 1vp7A in template set Warning: unaligning (T0547)K582 (1vp7A)G37 because L (left) conformation "forbidden" or filtered. T0547 580 :NS 1vp7A 35 :EN T0547 583 :LVNDKQ 1vp7A 38 :TLPLEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=80327 1ngkA expands to /projects/compbio/data/pdb/1ngk.pdb.gz 1ngkA:Skipped atom 276, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 278, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 280, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 282, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 284, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 286, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 288, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 290, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 292, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 294, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 296, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 298, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 300, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 302, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 304, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 306, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 310, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 318, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 320, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 322, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 324, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 326, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 328, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 330, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 332, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 334, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 336, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 338, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 340, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 342, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 346, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 348, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 350, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 352, because occupancy 0.500 <= existing 0.500 in 1ngkA Skipped atom 354, because occupancy 0.500 <= existing 0.500 in 1ngkA # 1ngkA.580.99 read from T0547.t04.many.frag # adding 1ngkA to template set # found chain 1ngkA in template set T0547 580 :NSKLVNDKQ 1ngkA 100 :DSETLDDEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80328 # 1sqwA.580.53 read from T0547.t04.many.frag # found chain 1sqwA in template set T0547 580 :NSKLVNDKQ 1sqwA 54 :LAANISGDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80329 # 1z2nX.580.251 read from T0547.t04.many.frag # found chain 1z2nX in training set Warning: unaligning (T0547)K582 (1z2nX)N249 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V584 (1z2nX)T251 because Y (epsilon') conformation "forbidden" or filtered. T0547 580 :NS 1z2nX 247 :LL T0547 583 :L 1z2nX 250 :L T0547 585 :NDKQ 1z2nX 252 :SEAE Number of specific fragments extracted= 3 number of extra gaps= 2 total=80332 1t3wA expands to /projects/compbio/data/pdb/1t3w.pdb.gz 1t3wA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1t3wA.580.125 read from T0547.t04.many.frag # adding 1t3wA to template set # found chain 1t3wA in template set Warning: unaligning (T0547)L583 (1t3wA)G562 because S (epsilon) conformation "forbidden" or filtered. T0547 580 :NSK 1t3wA 559 :RTH T0547 584 :VNDKQ 1t3wA 563 :LSNEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=80334 # 1vqoP.580.110 read from T0547.t04.many.frag # found chain 1vqoP in template set T0547 580 :NSKLVNDKQ 1vqoP 110 :DEGTLSSSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80335 # 1utg.580.43 read from T0547.t04.many.frag # found chain 1utg in training set T0547 580 :NSKLVNDKQ 1utg 44 :VLDSLPQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80336 # 1ynpA.580.290 read from T0547.t04.many.frag # found chain 1ynpA in training set T0547 580 :NSKLVNDKQ 1ynpA 271 :EATPLTAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80337 # 1sd4A.580.103 read from T0547.t04.many.frag # found chain 1sd4A in template set Warning: unaligning (T0547)K582 (1sd4A)E106 because L (left) conformation "forbidden" or filtered. T0547 580 :NS 1sd4A 104 :KN T0547 583 :LVNDKQ 1sd4A 107 :ELNNKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=80339 # 2f6kA.581.284 read from T0547.t04.many.frag # found chain 2f6kA in template set T0547 581 :SKLVNDKQK 2f6kA 285 :TDLLTNEQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80340 # 1u9lA.581.43 read from T0547.t04.many.frag # found chain 1u9lA in template set Warning: unaligning (T0547)K582 (1u9lA)E396 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L583 (1u9lA)G397 because T (delta_L) conformation "forbidden" or filtered. T0547 581 :S 1u9lA 395 :I T0547 584 :VNDKQK 1u9lA 398 :LDEPTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=80342 # 1j5wA.581.260 read from T0547.t04.many.frag # found chain 1j5wA in template set Warning: unaligning (T0547)K582 (1j5wA)G250 because L (left) conformation "forbidden" or filtered. T0547 581 :S 1j5wA 249 :R T0547 583 :LVNDKQK 1j5wA 251 :AISVSQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=80344 # 1l8aA.581.858 read from T0547.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)N585 (1l8aA)D863 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :SKLV 1l8aA 859 :RGEI T0547 586 :DKQK 1l8aA 864 :KKVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=80346 # 1x2iA.581.50 read from T0547.t04.many.frag # found chain 1x2iA in training set Warning: unaligning (T0547)S581 (1x2iA)V48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L583 (1x2iA)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 582 :K 1x2iA 49 :E T0547 584 :VNDKQK 1x2iA 51 :IGEKIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=80348 # 1ngkA.581.100 read from T0547.t04.many.frag # found chain 1ngkA in template set T0547 581 :SKLVNDKQK 1ngkA 101 :SETLDDEHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80349 # 1l6xB.581.14 read from T0547.t04.many.frag # found chain 1l6xB in training set Warning: unaligning (T0547)N585 (1l6xB)N24 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :SKLV 1l6xB 20 :DPNL T0547 586 :DKQK 1l6xB 25 :EEQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=80351 # 1u20A.581.191 read from T0547.t04.many.frag # found chain 1u20A in template set T0547 581 :SKLVNDKQK 1u20A 192 :LKLLREDQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80352 # 1cy5A.581.31 read from T0547.t04.many.frag # found chain 1cy5A in training set T0547 581 :SKLVNDKQK 1cy5A 32 :DGFLTISEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80353 # 1v4aA.581.358 read from T0547.t04.many.frag # found chain 1v4aA in template set Warning: unaligning (T0547)K582 (1v4aA)H360 because L (left) conformation "forbidden" or filtered. T0547 581 :S 1v4aA 359 :L T0547 583 :LVNDKQK 1v4aA 361 :LLSENDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=80355 # 1w6kA.581.303 read from T0547.t04.many.frag # found chain 1w6kA in template set Warning: unaligning (T0547)N585 (1w6kA)S308 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :SKLV 1w6kA 304 :EHHH T0547 586 :DKQK 1w6kA 309 :AHLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=80357 # 1q08A.581.31 read from T0547.t04.many.frag # found chain 1q08A in template set T0547 581 :SKLVNDKQK 1q08A 74 :PEHHTCQES Number of specific fragments extracted= 1 number of extra gaps= 0 total=80358 2eucA expands to /projects/compbio/data/pdb/2euc.pdb.gz 2eucA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2eucA.581.80 read from T0547.t04.many.frag # adding 2eucA to template set # found chain 2eucA in template set T0547 581 :SKLVNDKQK 2eucA 81 :LPYVTADMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80359 # 1qc7A.581.60 read from T0547.t04.many.frag # found chain 1qc7A in template set Warning: unaligning (T0547)K582 (1qc7A)G296 because S (epsilon) conformation "forbidden" or filtered. T0547 581 :S 1qc7A 295 :M T0547 583 :LVNDKQK 1qc7A 297 :PVRLKDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=80361 # 1ynpA.581.291 read from T0547.t04.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)K582 (1ynpA)T273 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1ynpA)T276 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :S 1ynpA 272 :A T0547 583 :LV 1ynpA 274 :PL T0547 586 :DKQK 1ynpA 277 :AEER Number of specific fragments extracted= 3 number of extra gaps= 2 total=80364 # 1kxu.581.271 read from T0547.t04.many.frag # found chain 1kxu in template set T0547 581 :SKLVNDKQK 1kxu 262 :YEPPRSEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80365 # 4ubpA.581.27 read from T0547.t04.many.frag # found chain 4ubpA in training set Warning: unaligning (T0547)K582 (4ubpA)L28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (4ubpA)N31 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :S 4ubpA 27 :G T0547 583 :LV 4ubpA 29 :KL T0547 586 :DKQK 4ubpA 32 :YPEA Number of specific fragments extracted= 3 number of extra gaps= 2 total=80368 # 1z3eB.581.45 read from T0547.t04.many.frag # found chain 1z3eB in training set Warning: unaligning (T0547)L583 (1z3eB)N290 because T (delta_L) conformation "forbidden" or filtered. T0547 581 :SK 1z3eB 288 :VR T0547 584 :VNDKQK 1z3eB 291 :LGRKSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=80370 # 1vqoP.581.111 read from T0547.t04.many.frag # found chain 1vqoP in template set Warning: unaligning (T0547)K582 (1vqoP)G112 because T (delta_L) conformation "forbidden" or filtered. T0547 581 :S 1vqoP 111 :E T0547 583 :LVNDKQK 1vqoP 113 :TLSSSQY Number of specific fragments extracted= 2 number of extra gaps= 1 total=80372 # 1ppjB.581.348 read from T0547.t04.many.frag # found chain 1ppjB in template set Warning: unaligning (T0547)K582 (1ppjB)G350 because T (delta_L) conformation "forbidden" or filtered. T0547 581 :S 1ppjB 349 :Q T0547 583 :LVNDKQK 1ppjB 351 :NLSNPDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=80374 # 2bwbA.581.16 read from T0547.t04.many.frag # found chain 2bwbA in template set T0547 581 :SKLVNDKQK 2bwbA 342 :MGFFDFDRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80375 # 1g8mA.581.516 read from T0547.t04.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)K582 (1g8mA)A518 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :S 1g8mA 517 :P T0547 583 :LVNDKQK 1g8mA 519 :QLTEAEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=80377 # 1xo0A.581.233 read from T0547.t04.many.frag # found chain 1xo0A in template set T0547 581 :SKLVNDKQK 1xo0A 253 :TSQLSTRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80378 # 1eswA.581.478 read from T0547.t04.many.frag # found chain 1eswA in template set Warning: unaligning (T0547)K582 (1eswA)G480 because T (delta_L) conformation "forbidden" or filtered. T0547 581 :S 1eswA 479 :P T0547 583 :LVNDKQK 1eswA 481 :ELSPEHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=80380 # 1lm5A.581.144 read from T0547.t04.many.frag # found chain 1lm5A in training set T0547 581 :SKLVNDKQK 1lm5A 2753 :KGFIDGRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80381 # 1h8eA.581.485 read from T0547.t04.many.frag # found chain 1h8eA in template set T0547 581 :SKLVNDKQK 1h8eA 486 :DGKISEESD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80382 # 1t3wA.581.126 read from T0547.t04.many.frag # found chain 1t3wA in template set T0547 581 :SKLVNDKQK 1t3wA 560 :THGLSNEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=80383 1a41 expands to /projects/compbio/data/pdb/1a41.pdb.gz 1a41:Warning: there is no chain 1a41 will retry with 1a41A # 1a41.581.183 read from T0547.t04.many.frag # adding 1a41 to template set # found chain 1a41 in template set Warning: unaligning (T0547)S581 (1a41)G264 because T (delta_L) conformation "forbidden" or filtered. T0547 582 :KLVNDKQK 1a41 265 :HTPSISKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=80384 1nxhA expands to /projects/compbio/data/pdb/1nxh.pdb.gz 1nxhA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1nxhA.581.83 read from T0547.t04.many.frag # adding 1nxhA to template set # found chain 1nxhA in template set Warning: unaligning (T0547)K582 (1nxhA)E85 because L (left) conformation "forbidden" or filtered. T0547 581 :S 1nxhA 84 :M T0547 583 :LVNDKQK 1nxhA 86 :IISVDDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=80386 # 1xvhA.581.91 read from T0547.t04.many.frag # found chain 1xvhA in template set T0547 581 :SKLVNDKQK 1xvhA 92 :ASDLNQKQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80387 # 1kxu.582.272 read from T0547.t04.many.frag # found chain 1kxu in template set T0547 582 :KLVNDKQKK 1kxu 263 :EPPRSEEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80388 # 1j5wA.582.261 read from T0547.t04.many.frag # found chain 1j5wA in template set Warning: unaligning (T0547)K582 (1j5wA)G250 because L (left) conformation "forbidden" or filtered. T0547 583 :LVNDKQKK 1j5wA 251 :AISVSQRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=80389 # 1a41.582.184 read from T0547.t04.many.frag # found chain 1a41 in template set T0547 582 :KLVNDKQKK 1a41 265 :HTPSISKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80390 # 2f6kA.582.285 read from T0547.t04.many.frag # found chain 2f6kA in template set T0547 582 :KLVNDKQKK 2f6kA 286 :DLLTNEQKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80391 # 1u9lA.582.44 read from T0547.t04.many.frag # found chain 1u9lA in template set T0547 582 :KLVNDKQKK 1u9lA 396 :EGLDEPTVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80392 # 1x2iA.582.51 read from T0547.t04.many.frag # found chain 1x2iA in training set T0547 582 :KLVNDKQKK 1x2iA 49 :EGIGEKIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80393 # 1ngkA.582.101 read from T0547.t04.many.frag # found chain 1ngkA in template set T0547 582 :KLVNDKQKK 1ngkA 102 :ETLDDEHRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80394 # 2eucA.582.81 read from T0547.t04.many.frag # found chain 2eucA in template set T0547 582 :KLVNDKQKK 2eucA 82 :PYVTADMFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80395 # 2bptA.582.558 read from T0547.t04.many.frag # found chain 2bptA in template set T0547 582 :KLVNDKQKK 2bptA 559 :NQLTLEDAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80396 # 1g8mA.582.517 read from T0547.t04.many.frag # found chain 1g8mA in training set T0547 582 :KLVNDKQKK 1g8mA 518 :AQLTEAEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80397 # 1ynpA.582.292 read from T0547.t04.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)K582 (1ynpA)T273 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LVNDKQKK 1ynpA 274 :PLTAEERQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=80398 # 1l6xB.582.15 read from T0547.t04.many.frag # found chain 1l6xB in training set Warning: unaligning (T0547)N585 (1l6xB)N24 because P (beta_P) conformation "forbidden" or filtered. T0547 582 :KLV 1l6xB 21 :PNL T0547 586 :DKQKK 1l6xB 25 :EEQRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=80400 # 1v4aA.582.359 read from T0547.t04.many.frag # found chain 1v4aA in template set T0547 582 :KLVNDKQKK 1v4aA 360 :HLLSENDAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80401 # 1t3wA.582.127 read from T0547.t04.many.frag # found chain 1t3wA in template set Warning: unaligning (T0547)K582 (1t3wA)H561 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L583 (1t3wA)G562 because S (epsilon) conformation "forbidden" or filtered. T0547 584 :VNDKQKK 1t3wA 563 :LSNEERL Number of specific fragments extracted= 1 number of extra gaps= 1 total=80402 # 1w6kA.582.304 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 582 :KLVNDKQKK 1w6kA 305 :HHHSAHLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80403 # 1e4cP.582.191 read from T0547.t04.many.frag # found chain 1e4cP in training set Warning: unaligning (T0547)N585 (1e4cP)S195 because P (beta_P) conformation "forbidden" or filtered. T0547 582 :KLV 1e4cP 192 :PVL T0547 586 :DKQKK 1e4cP 196 :DEEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=80405 # 4ubpA.582.28 read from T0547.t04.many.frag # found chain 4ubpA in training set T0547 582 :KLVNDKQKK 4ubpA 28 :LKLNYPEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80406 # 1nxhA.582.84 read from T0547.t04.many.frag # found chain 1nxhA in template set Warning: unaligning (T0547)K582 (1nxhA)E85 because L (left) conformation "forbidden" or filtered. T0547 583 :LVNDKQKK 1nxhA 86 :IISVDDAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=80407 # 1b4fA.582.52 read from T0547.t04.many.frag # found chain 1b4fA in template set Warning: unaligning (T0547)K582 (1b4fA)G53 because T (delta_L) conformation "forbidden" or filtered. T0547 583 :LVNDKQKK 1b4fA 54 :VTLAGHQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=80408 # 1utg.582.45 read from T0547.t04.many.frag # found chain 1utg in training set T0547 582 :KLVNDKQKK 1utg 46 :DSLPQTTRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80409 # 1l8aA.582.859 read from T0547.t04.many.frag # found chain 1l8aA in template set T0547 582 :KLVNDKQKK 1l8aA 860 :GEIDKKVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80410 # 1u20A.582.192 read from T0547.t04.many.frag # found chain 1u20A in template set T0547 582 :KLVNDKQKK 1u20A 193 :KLLREDQIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80411 # 1eswA.582.479 read from T0547.t04.many.frag # found chain 1eswA in template set Warning: unaligning (T0547)K582 (1eswA)G480 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1eswA)S483 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LV 1eswA 481 :EL T0547 586 :DKQKK 1eswA 484 :PEHGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=80413 # 1x6iA.582.35 read from T0547.t04.many.frag # found chain 1x6iA in training set T0547 582 :KLVNDKQKK 1x6iA 33 :DSLSDDEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80414 # 1v4pA.582.47 read from T0547.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0547)K582 (1v4pA)R48 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1v4pA)S51 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LV 1v4pA 49 :KP T0547 586 :DKQKK 1v4pA 52 :DEEIR Number of specific fragments extracted= 2 number of extra gaps= 2 total=80416 # 1lc0A.582.261 read from T0547.t04.many.frag # found chain 1lc0A in training set Warning: unaligning (T0547)K582 (1lc0A)D263 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1lc0A)S266 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LV 1lc0A 264 :QV T0547 586 :DKQKK 1lc0A 267 :AEDLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=80418 # 1cy5A.582.32 read from T0547.t04.many.frag # found chain 1cy5A in training set T0547 582 :KLVNDKQKK 1cy5A 33 :GFLTISEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80419 # 1twfF.582.82 read from T0547.t04.many.frag # found chain 1twfF in template set Warning: unaligning (T0547)N585 (1twfF)T86 because P (beta_P) conformation "forbidden" or filtered. T0547 582 :KLV 1twfF 83 :PYM T0547 586 :DKQKK 1twfF 87 :KYERA Number of specific fragments extracted= 2 number of extra gaps= 1 total=80421 # 1xo0A.582.234 read from T0547.t04.many.frag # found chain 1xo0A in template set T0547 582 :KLVNDKQKK 1xo0A 254 :SQLSTRALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80422 # 1s29A.582.3 read from T0547.t04.many.frag # found chain 1s29A in training set Warning: unaligning (T0547)N585 (1s29A)S7 because P (beta_P) conformation "forbidden" or filtered. T0547 582 :KLV 1s29A 4 :MPL T0547 586 :DKQKK 1s29A 8 :SENKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=80424 # 1a41.583.185 read from T0547.t04.many.frag # found chain 1a41 in template set Warning: unaligning (T0547)N585 (1a41)S268 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LV 1a41 266 :TP T0547 586 :DKQKKH 1a41 269 :ISKRAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=80426 # 2eucA.583.82 read from T0547.t04.many.frag # found chain 2eucA in template set Warning: unaligning (T0547)N585 (2eucA)T85 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LV 2eucA 83 :YV T0547 586 :DKQKKH 2eucA 86 :ADMFET Number of specific fragments extracted= 2 number of extra gaps= 1 total=80428 # 1ngkA.583.102 read from T0547.t04.many.frag # found chain 1ngkA in template set T0547 583 :LVNDKQKKH 1ngkA 103 :TLDDEHRRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80429 # 2f6kA.583.286 read from T0547.t04.many.frag # found chain 2f6kA in template set Warning: unaligning (T0547)N585 (2f6kA)T289 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LV 2f6kA 287 :LL T0547 586 :DKQKKH 2f6kA 290 :NEQKQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=80431 # 1nxhA.583.85 read from T0547.t04.many.frag # found chain 1nxhA in template set T0547 583 :LVNDKQKKH 1nxhA 86 :IISVDDAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80432 # 1v4pA.583.48 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 583 :LVNDKQKKH 1v4pA 49 :KPSDEEIRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80433 # 1ynpA.583.293 read from T0547.t04.many.frag # found chain 1ynpA in training set T0547 583 :LVNDKQKKH 1ynpA 274 :PLTAEERQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80434 # 2bptA.583.559 read from T0547.t04.many.frag # found chain 2bptA in template set T0547 583 :LVNDKQKKH 2bptA 560 :QLTLEDAQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80435 # 1kxu.583.273 read from T0547.t04.many.frag # found chain 1kxu in template set T0547 583 :LVNDKQKKH 1kxu 264 :PPRSEEVAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80436 # 1twfF.583.83 read from T0547.t04.many.frag # found chain 1twfF in template set T0547 583 :LVNDKQKKH 1twfF 84 :YMTKYERAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80437 # 1s29A.583.4 read from T0547.t04.many.frag # found chain 1s29A in training set T0547 583 :LVNDKQKKH 1s29A 5 :PLSSENKQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80438 # 1j5wA.583.262 read from T0547.t04.many.frag # found chain 1j5wA in template set T0547 583 :LVNDKQKKH 1j5wA 251 :AISVSQRQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80439 # 2mhr.583.89 read from T0547.t04.many.frag # found chain 2mhr in training set Warning: unaligning (T0547)L583 (2mhr)P90 because C (cis) conformation "forbidden" or filtered. T0547 584 :VNDKQKKH 2mhr 91 :VDAKNVDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=80440 # 1ppjB.583.350 read from T0547.t04.many.frag # found chain 1ppjB in template set T0547 583 :LVNDKQKKH 1ppjB 351 :NLSNPDVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80441 # 1g8mA.583.518 read from T0547.t04.many.frag # found chain 1g8mA in training set T0547 583 :LVNDKQKKH 1g8mA 519 :QLTEAEKKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80442 # 1utg.583.46 read from T0547.t04.many.frag # found chain 1utg in training set T0547 583 :LVNDKQKKH 1utg 47 :SLPQTTREN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80443 # 1e4cP.583.192 read from T0547.t04.many.frag # found chain 1e4cP in training set T0547 583 :LVNDKQKKH 1e4cP 193 :VLSDEEIAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80444 # 1w6kA.583.305 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 583 :LVNDKQKKH 1w6kA 306 :HHSAHLRQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80445 # 1n35A.583.1024 read from T0547.t04.many.frag # found chain 1n35A in template set T0547 583 :LVNDKQKKH 1n35A 1025 :IATREELAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80446 # 1x6iA.583.36 read from T0547.t04.many.frag # found chain 1x6iA in training set T0547 583 :LVNDKQKKH 1x6iA 34 :SLSDDEKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80447 # 1zx1A.583.194 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 583 :LVNDKQKKH 1zx1A 194 :IASEEERKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80448 # 2b8iA.583.57 read from T0547.t04.many.frag # found chain 2b8iA in training set Warning: unaligning (T0547)V584 (2b8iA)E59 because T (delta_L) conformation "forbidden" or filtered. T0547 583 :L 2b8iA 58 :L T0547 585 :NDKQKKH 2b8iA 60 :NHEAISN Number of specific fragments extracted= 2 number of extra gaps= 1 total=80450 # 1eswA.583.480 read from T0547.t04.many.frag # found chain 1eswA in template set T0547 583 :LVNDKQKKH 1eswA 481 :ELSPEHGAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80451 1n81A expands to /projects/compbio/data/pdb/1n81.pdb.gz 1n81A:# 1n81A.583.152 read from T0547.t04.many.frag # adding 1n81A to template set # found chain 1n81A in template set T0547 583 :LVNDKQKKH 1n81A 173 :KFTDDQYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80452 # 2blfB.583.63 read from T0547.t04.many.frag # found chain 2blfB in training set T0547 583 :LVNDKQKKH 2blfB 564 :PVDEADAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80453 # 1aquA.583.268 read from T0547.t04.many.frag # found chain 1aquA in training set T0547 583 :LVNDKQKKH 1aquA 267 :HFPEALRER Number of specific fragments extracted= 1 number of extra gaps= 0 total=80454 # 1t3wA.583.128 read from T0547.t04.many.frag # found chain 1t3wA in template set T0547 583 :LVNDKQKKH 1t3wA 562 :GLSNEERLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80455 # 1l6xB.583.16 read from T0547.t04.many.frag # found chain 1l6xB in training set T0547 583 :LVNDKQKKH 1l6xB 22 :NLNEEQRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80456 # 1lc0A.583.262 read from T0547.t04.many.frag # found chain 1lc0A in training set T0547 583 :LVNDKQKKH 1lc0A 264 :QVSAEDLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80457 # 4ubpA.583.29 read from T0547.t04.many.frag # found chain 4ubpA in training set T0547 583 :LVNDKQKKH 4ubpA 29 :KLNYPEAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80458 # 1ngkA.584.103 read from T0547.t04.many.frag # found chain 1ngkA in template set T0547 584 :VNDKQKKHI 1ngkA 104 :LDDEHRREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80459 # 1zx1A.584.195 read from T0547.t04.many.frag # found chain 1zx1A in template set Warning: unaligning (T0547)N585 (1zx1A)S196 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 1zx1A 195 :A T0547 586 :DKQKKHI 1zx1A 197 :EEERKGM Number of specific fragments extracted= 2 number of extra gaps= 1 total=80461 # 1s29A.584.5 read from T0547.t04.many.frag # found chain 1s29A in training set T0547 584 :VNDKQKKHI 1s29A 6 :LSSENKQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80462 # 1v4pA.584.49 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 584 :VNDKQKKHI 1v4pA 50 :PSDEEIREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80463 # 2eucA.584.83 read from T0547.t04.many.frag # found chain 2eucA in template set T0547 584 :VNDKQKKHI 2eucA 84 :VTADMFETS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80464 # 2bptA.584.560 read from T0547.t04.many.frag # found chain 2bptA in template set Warning: unaligning (T0547)N585 (2bptA)T562 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 2bptA 561 :L T0547 586 :DKQKKHI 2bptA 563 :LEDAQSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=80466 # 1aquA.584.269 read from T0547.t04.many.frag # found chain 1aquA in training set T0547 584 :VNDKQKKHI 1aquA 268 :FPEALRERF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80467 # 1j5wA.584.263 read from T0547.t04.many.frag # found chain 1j5wA in template set Warning: unaligning (T0547)N585 (1j5wA)S253 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 1j5wA 252 :I T0547 586 :DKQKKHI 1j5wA 254 :VSQRQTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=80469 # 1twfF.584.84 read from T0547.t04.many.frag # found chain 1twfF in template set T0547 584 :VNDKQKKHI 1twfF 85 :MTKYERARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80470 # 1t0tV.584.158 read from T0547.t04.many.frag # found chain 1t0tV in training set T0547 584 :VNDKQKKHI 1t0tV 159 :LSMEQRREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80471 # 2mhr.584.90 read from T0547.t04.many.frag # found chain 2mhr in training set T0547 584 :VNDKQKKHI 2mhr 91 :VDAKNVDYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=80472 # 1jo0A.584.53 read from T0547.t04.many.frag # found chain 1jo0A in training set T0547 584 :VNDKQKKHI 1jo0A 55 :ADRETKQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80473 # 1kxu.584.274 read from T0547.t04.many.frag # found chain 1kxu in template set T0547 584 :VNDKQKKHI 1kxu 265 :PRSEEVAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80474 # 1cfr.584.192 read from T0547.t04.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)N585 (1cfr)R194 because E (beta_S) conformation "forbidden" or filtered. T0547 584 :V 1cfr 193 :F T0547 586 :DKQKKHI 1cfr 195 :PDRRLQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=80476 # 1uteA.584.156 read from T0547.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)N585 (1uteA)N158 because E (beta_S) conformation "forbidden" or filtered. T0547 584 :V 1uteA 157 :R T0547 586 :DKQKKHI 1uteA 159 :LALARTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=80478 1sczA expands to /projects/compbio/data/pdb/1scz.pdb.gz 1sczA:# 1sczA.584.206 read from T0547.t04.many.frag # adding 1sczA to template set # found chain 1sczA in template set T0547 584 :VNDKQKKHI 1sczA 378 :IDGRESVGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80479 # 1ykjA.584.355 read from T0547.t04.many.frag # found chain 1ykjA in template set T0547 584 :VNDKQKKHI 1ykjA 1356 :TDAFSQRIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80480 # 1a41.584.186 read from T0547.t04.many.frag # found chain 1a41 in template set T0547 584 :VNDKQKKHI 1a41 267 :PSISKRAYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=80481 # 2f6kA.584.287 read from T0547.t04.many.frag # found chain 2f6kA in template set T0547 584 :VNDKQKKHI 2f6kA 288 :LTNEQKQAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80482 # 2ajtA.584.220 read from T0547.t04.many.frag # found chain 2ajtA in template set T0547 584 :VNDKQKKHI 2ajtA 221 :ISDGDVNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80483 # 1utg.584.47 read from T0547.t04.many.frag # found chain 1utg in training set Warning: unaligning (T0547)N585 (1utg)P49 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 1utg 48 :L T0547 586 :DKQKKHI 1utg 50 :QTTRENI Number of specific fragments extracted= 2 number of extra gaps= 1 total=80485 1x75A expands to /projects/compbio/data/pdb/1x75.pdb.gz 1x75A:Skipped atom 700, because occupancy 0.500 <= existing 0.500 in 1x75A Skipped atom 702, because occupancy 0.500 <= existing 0.500 in 1x75A Skipped atom 704, because occupancy 0.500 <= existing 0.500 in 1x75A Skipped atom 706, because occupancy 0.500 <= existing 0.500 in 1x75A Skipped atom 708, because occupancy 0.500 <= existing 0.500 in 1x75A Skipped atom 710, because occupancy 0.500 <= existing 0.500 in 1x75A # 1x75A.584.103 read from T0547.t04.many.frag # adding 1x75A to template set # found chain 1x75A in template set T0547 584 :VNDKQKKHI 1x75A 466 :LTGLEHEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80486 # 1nxhA.584.86 read from T0547.t04.many.frag # found chain 1nxhA in template set Warning: unaligning (T0547)N585 (1nxhA)S88 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 1nxhA 87 :I T0547 586 :DKQKKHI 1nxhA 89 :VDDAEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=80488 # 1l9vA.584.196 read from T0547.t04.many.frag # found chain 1l9vA in template set T0547 584 :VNDKQKKHI 1l9vA 197 :ISDVHVKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80489 # 1vflA.584.333 read from T0547.t04.many.frag # found chain 1vflA in training set T0547 584 :VNDKQKKHI 1vflA 332 :LPEDEKKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80490 # 1rwhA.584.322 read from T0547.t04.many.frag # found chain 1rwhA in training set T0547 584 :VNDKQKKHI 1rwhA 323 :MDPATAARW Number of specific fragments extracted= 1 number of extra gaps= 0 total=80491 # 1tr0A.584.20 read from T0547.t04.many.frag # found chain 1tr0A in training set Warning: unaligning (T0547)N585 (1tr0A)T22 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 1tr0A 21 :I T0547 586 :DKQKKHI 1tr0A 23 :REQIDNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=80493 # 1w6kA.584.306 read from T0547.t04.many.frag # found chain 1w6kA in template set T0547 584 :VNDKQKKHI 1w6kA 307 :HSAHLRQRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80494 # 1wzdA.584.184 read from T0547.t04.many.frag # found chain 1wzdA in training set Warning: unaligning (T0547)H591 (1wzdA)H192 because H (helix) conformation "forbidden" or filtered. T0547 584 :VNDKQKK 1wzdA 185 :LSDEQRE T0547 592 :I 1wzdA 193 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=80496 # 2blfB.584.64 read from T0547.t04.many.frag # found chain 2blfB in training set Warning: unaligning (T0547)N585 (2blfB)D566 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 2blfB 565 :V T0547 586 :DKQKKHI 2blfB 567 :EADAKAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=80498 # 1zx1A.585.196 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 585 :NDKQKKHIL 1zx1A 196 :SEEERKGMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80499 # 1twfF.585.85 read from T0547.t04.many.frag # found chain 1twfF in template set T0547 585 :NDKQKKHIL 1twfF 86 :TKYERARIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80500 # 1s29A.585.6 read from T0547.t04.many.frag # found chain 1s29A in training set T0547 585 :NDKQKKHIL 1s29A 7 :SSENKQKLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80501 # 1ngkA.585.104 read from T0547.t04.many.frag # found chain 1ngkA in template set T0547 585 :NDKQKKHIL 1ngkA 105 :DDEHRRELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80502 # 1v4pA.585.50 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 585 :NDKQKKHIL 1v4pA 51 :SDEEIREIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80503 # 1cfr.585.193 read from T0547.t04.many.frag # found chain 1cfr in template set T0547 585 :NDKQKKHIL 1cfr 194 :RPDRRLQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80504 # 1aquA.585.270 read from T0547.t04.many.frag # found chain 1aquA in training set T0547 585 :NDKQKKHIL 1aquA 269 :PEALRERFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80505 # 1vflA.585.334 read from T0547.t04.many.frag # found chain 1vflA in training set T0547 585 :NDKQKKHIL 1vflA 333 :PEDEKKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80506 # 1t0tV.585.159 read from T0547.t04.many.frag # found chain 1t0tV in training set T0547 585 :NDKQKKHIL 1t0tV 160 :SMEQRRELM Number of specific fragments extracted= 1 number of extra gaps= 0 total=80507 # 1jo0A.585.54 read from T0547.t04.many.frag # found chain 1jo0A in training set T0547 585 :NDKQKKHIL 1jo0A 56 :DRETKQLII Number of specific fragments extracted= 1 number of extra gaps= 0 total=80508 # 1uteA.585.157 read from T0547.t04.many.frag # found chain 1uteA in training set T0547 585 :NDKQKKHIL 1uteA 158 :NLALARTQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80509 # 1x75A.585.104 read from T0547.t04.many.frag # found chain 1x75A in template set T0547 585 :NDKQKKHIL 1x75A 467 :TGLEHEKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80510 # 1sczA.585.207 read from T0547.t04.many.frag # found chain 1sczA in template set T0547 585 :NDKQKKHIL 1sczA 379 :DGRESVGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80511 # 1rwhA.585.323 read from T0547.t04.many.frag # found chain 1rwhA in training set T0547 585 :NDKQKKHIL 1rwhA 324 :DPATAARWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80512 # 1otjA.585.213 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 585 :NDKQKKHIL 1otjA 214 :SEKESEALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80513 # 1j5wA.585.264 read from T0547.t04.many.frag # found chain 1j5wA in template set T0547 585 :NDKQKKHIL 1j5wA 253 :SVSQRQTYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80514 # 2mhr.585.91 read from T0547.t04.many.frag # found chain 2mhr in training set T0547 585 :NDKQKKHIL 2mhr 92 :DAKNVDYCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80515 # 1ylqA.585.48 read from T0547.t04.many.frag # found chain 1ylqA in template set T0547 585 :NDKQKKHIL 1ylqA 46 :DRNRKLEFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80516 # 1a73A.585.3 read from T0547.t04.many.frag # found chain 1a73A in training set T0547 585 :NDKQKKHIL 1a73A 4 :TNAQILAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80517 # 2aalA.585.76 read from T0547.t04.many.frag # found chain 2aalA in training set T0547 585 :NDKQKKHIL 2aalA 76 :SEEQKVCFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80518 # 2eucA.585.84 read from T0547.t04.many.frag # found chain 2eucA in template set T0547 585 :NDKQKKHIL 2eucA 85 :TADMFETSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80519 # 2ajtA.585.221 read from T0547.t04.many.frag # found chain 2ajtA in template set T0547 585 :NDKQKKHIL 2ajtA 222 :SDGDVNALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80520 # 1ykjA.585.356 read from T0547.t04.many.frag # found chain 1ykjA in template set T0547 585 :NDKQKKHIL 1ykjA 1357 :DAFSQRIQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80521 # 1p7tA.585.587 read from T0547.t04.many.frag # found chain 1p7tA in template set T0547 585 :NDKQKKHIL 1p7tA 588 :SAQEIQQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80522 # 1ntyA.585.291 read from T0547.t04.many.frag # found chain 1ntyA in training set Warning: unaligning (T0547)N585 (1ntyA)S1516 because Y (epsilon') conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 1ntyA 1517 :IENKQDWI Number of specific fragments extracted= 1 number of extra gaps= 1 total=80523 # 1qysA.585.55 read from T0547.t04.many.frag # found chain 1qysA in template set Warning: unaligning (T0547)N585 (1qysA)T56 because E (beta_S) conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 1qysA 57 :KKEAEKFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=80524 # 1tr0A.585.21 read from T0547.t04.many.frag # found chain 1tr0A in training set Warning: unaligning (T0547)N585 (1tr0A)T22 because P (beta_P) conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 1tr0A 23 :REQIDNYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=80525 # 1nxhA.585.87 read from T0547.t04.many.frag # found chain 1nxhA in template set T0547 585 :NDKQKKHIL 1nxhA 88 :SVDDAEALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80526 # 1x9zA.585.145 read from T0547.t04.many.frag # found chain 1x9zA in template set T0547 585 :NDKQKKHIL 1x9zA 573 :SMAQAITLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80527 # 2dpmA.585.214 read from T0547.t04.many.frag # found chain 2dpmA in training set T0547 585 :NDKQKKHIL 2dpmA 215 :SFADQVRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80528 # 1otjA.586.214 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 586 :DKQKKHILG 1otjA 215 :EKESEALLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80529 # 1zx1A.586.197 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 586 :DKQKKHILG 1zx1A 197 :EEERKGMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80530 # 1ylqA.586.49 read from T0547.t04.many.frag # found chain 1ylqA in template set T0547 586 :DKQKKHILG 1ylqA 47 :RNRKLEFFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80531 # 1s29A.586.7 read from T0547.t04.many.frag # found chain 1s29A in training set T0547 586 :DKQKKHILG 1s29A 8 :SENKQKLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80532 # 1sczA.586.208 read from T0547.t04.many.frag # found chain 1sczA in template set T0547 586 :DKQKKHILG 1sczA 380 :GRESVGFLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80533 # 1v4pA.586.51 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 586 :DKQKKHILG 1v4pA 52 :DEEIREIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=80534 # 1aquA.586.271 read from T0547.t04.many.frag # found chain 1aquA in training set T0547 586 :DKQKKHILG 1aquA 270 :EALRERFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80535 # 1x75A.586.105 read from T0547.t04.many.frag # found chain 1x75A in template set T0547 586 :DKQKKHILG 1x75A 468 :GLEHEKLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80536 # 1vflA.586.335 read from T0547.t04.many.frag # found chain 1vflA in training set T0547 586 :DKQKKHILG 1vflA 334 :EDEKKELLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80537 # 1a73A.586.4 read from T0547.t04.many.frag # found chain 1a73A in training set T0547 586 :DKQKKHILG 1a73A 5 :NAQILAVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=80538 # 1cfr.586.194 read from T0547.t04.many.frag # found chain 1cfr in template set T0547 586 :DKQKKHILG 1cfr 195 :PDRRLQLAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80539 # 1uteA.586.158 read from T0547.t04.many.frag # found chain 1uteA in training set T0547 586 :DKQKKHILG 1uteA 159 :LALARTQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80540 # 1ntyA.586.292 read from T0547.t04.many.frag # found chain 1ntyA in training set T0547 586 :DKQKKHILG 1ntyA 1517 :IENKQDWIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80541 # 1t0tV.586.160 read from T0547.t04.many.frag # found chain 1t0tV in training set T0547 586 :DKQKKHILG 1t0tV 161 :MEQRRELMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80542 # 1twfF.586.86 read from T0547.t04.many.frag # found chain 1twfF in template set T0547 586 :DKQKKHILG 1twfF 87 :KYERARILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80543 # 1ngkA.586.105 read from T0547.t04.many.frag # found chain 1ngkA in template set T0547 586 :DKQKKHILG 1ngkA 106 :DEHRRELLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80544 # 1qysA.586.56 read from T0547.t04.many.frag # found chain 1qysA in template set T0547 586 :DKQKKHILG 1qysA 57 :KKEAEKFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80545 # 1rwhA.586.324 read from T0547.t04.many.frag # found chain 1rwhA in training set T0547 586 :DKQKKHILG 1rwhA 325 :PATAARWRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80546 # 2dpmA.586.215 read from T0547.t04.many.frag # found chain 2dpmA in training set T0547 586 :DKQKKHILG 2dpmA 216 :FADQVRLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80547 # 1pmmA.586.430 read from T0547.t04.many.frag # found chain 1pmmA in template set T0547 586 :DKQKKHILG 1pmmA 431 :MDFAELLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80548 # 1x9zA.586.146 read from T0547.t04.many.frag # found chain 1x9zA in template set T0547 586 :DKQKKHILG 1x9zA 574 :MAQAITLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80549 # 1jo0A.586.55 read from T0547.t04.many.frag # found chain 1jo0A in training set T0547 586 :DKQKKHILG 1jo0A 57 :RETKQLIIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80550 # 1u8xX.586.442 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 586 :DKQKKHILG 1u8xX 420 :ARVARLILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80551 # 1tr0A.586.22 read from T0547.t04.many.frag # found chain 1tr0A in training set T0547 586 :DKQKKHILG 1tr0A 23 :REQIDNYIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80552 # 1wvfA.586.487 read from T0547.t04.many.frag # found chain 1wvfA in training set T0547 586 :DKQKKHILG 1wvfA 489 :PVKRKLEHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80553 # 1c3cA.586.366 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 586 :DKQKKHILG 1c3cA 368 :RKEAYDIVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80554 # 2ajtA.586.222 read from T0547.t04.many.frag # found chain 2ajtA in template set T0547 586 :DKQKKHILG 2ajtA 223 :DGDVNALVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80555 # 2mhr.586.92 read from T0547.t04.many.frag # found chain 2mhr in training set T0547 586 :DKQKKHILG 2mhr 93 :AKNVDYCKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80556 # 1p7tA.586.588 read from T0547.t04.many.frag # found chain 1p7tA in template set T0547 586 :DKQKKHILG 1p7tA 589 :AQEIQQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80557 # 1q2lA.586.824 read from T0547.t04.many.frag # found chain 1q2lA in template set T0547 586 :DKQKKHILG 1q2lA 848 :PDEFAQIQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80558 # 1otjA.587.215 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 587 :KQKKHILGE 1otjA 216 :KESEALLSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80559 # 1zx1A.587.198 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 587 :KQKKHILGE 1zx1A 198 :EERKGMVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80560 # 1sczA.587.209 read from T0547.t04.many.frag # found chain 1sczA in template set T0547 587 :KQKKHILGE 1sczA 381 :RESVGFLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80561 # 1a73A.587.5 read from T0547.t04.many.frag # found chain 1a73A in training set T0547 587 :KQKKHILGE 1a73A 6 :AQILAVIDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80562 # 1ylqA.587.50 read from T0547.t04.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)G594 (1ylqA)G55 because H (helix) conformation "forbidden" or filtered. T0547 587 :KQKKHIL 1ylqA 48 :NRKLEFF T0547 595 :E 1ylqA 56 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=80564 # 1aquA.587.272 read from T0547.t04.many.frag # found chain 1aquA in training set T0547 587 :KQKKHILGE 1aquA 271 :ALRERFDEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80565 # 1twfF.587.87 read from T0547.t04.many.frag # found chain 1twfF in template set T0547 587 :KQKKHILGE 1twfF 88 :YERARILGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80566 # 1u8xX.587.443 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 587 :KQKKHILGE 1u8xX 421 :RVARLILED Number of specific fragments extracted= 1 number of extra gaps= 0 total=80567 # 1rwhA.587.325 read from T0547.t04.many.frag # found chain 1rwhA in training set T0547 587 :KQKKHILGE 1rwhA 326 :ATAARWRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80568 # 1x75A.587.106 read from T0547.t04.many.frag # found chain 1x75A in template set T0547 587 :KQKKHILGE 1x75A 469 :LEHEKLLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80569 # 1ntyA.587.293 read from T0547.t04.many.frag # found chain 1ntyA in training set T0547 587 :KQKKHILGE 1ntyA 1518 :ENKQDWIKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80570 # 1v4pA.587.52 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 587 :KQKKHILGE 1v4pA 53 :EEIREIERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80571 # 2dpmA.587.216 read from T0547.t04.many.frag # found chain 2dpmA in training set T0547 587 :KQKKHILGE 2dpmA 217 :ADQVRLRDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80572 # 1s29A.587.8 read from T0547.t04.many.frag # found chain 1s29A in training set T0547 587 :KQKKHILGE 1s29A 9 :ENKQKLQKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80573 # 1uteA.587.159 read from T0547.t04.many.frag # found chain 1uteA in training set T0547 587 :KQKKHILGE 1uteA 160 :ALARTQLAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=80574 # 1pmmA.587.431 read from T0547.t04.many.frag # found chain 1pmmA in template set T0547 587 :KQKKHILGE 1pmmA 432 :DFAELLLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=80575 # 1ngkA.587.106 read from T0547.t04.many.frag # found chain 1ngkA in template set T0547 587 :KQKKHILGE 1ngkA 107 :EHRRELLDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80576 # 1cfr.587.195 read from T0547.t04.many.frag # found chain 1cfr in template set T0547 587 :KQKKHILGE 1cfr 196 :DRRLQLAHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80577 # 1vkpA.587.329 read from T0547.t04.many.frag # found chain 1vkpA in training set T0547 587 :KQKKHILGE 1vkpA 330 :IRDKEAIRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80578 # 1x9zA.587.147 read from T0547.t04.many.frag # found chain 1x9zA in template set T0547 587 :KQKKHILGE 1x9zA 575 :AQAITLLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80579 # 1vflA.587.336 read from T0547.t04.many.frag # found chain 1vflA in training set T0547 587 :KQKKHILGE 1vflA 335 :DEKKELLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80580 # 1t0tV.587.161 read from T0547.t04.many.frag # found chain 1t0tV in training set T0547 587 :KQKKHILGE 1t0tV 162 :EQRRELMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80581 # 1qysA.587.57 read from T0547.t04.many.frag # found chain 1qysA in template set T0547 587 :KQKKHILGE 1qysA 58 :KEAEKFAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80582 # 3cla.587.194 read from T0547.t04.many.frag # found chain 3cla in training set T0547 587 :KQKKHILGE 3cla 201 :FHVARFINR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80583 # 1tr0A.587.23 read from T0547.t04.many.frag # found chain 1tr0A in training set T0547 587 :KQKKHILGE 1tr0A 24 :EQIDNYIND Number of specific fragments extracted= 1 number of extra gaps= 0 total=80584 # 1c3cA.587.367 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 587 :KQKKHILGE 1c3cA 369 :KEAYDIVQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80585 # 1jo0A.587.56 read from T0547.t04.many.frag # found chain 1jo0A in training set T0547 587 :KQKKHILGE 1jo0A 58 :ETKQLIINA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80586 # 1pg4A.587.573 read from T0547.t04.many.frag # found chain 1pg4A in training set T0547 587 :KQKKHILGE 1pg4A 574 :ELYAEVRNW Number of specific fragments extracted= 1 number of extra gaps= 0 total=80587 # 1wvfA.587.488 read from T0547.t04.many.frag # found chain 1wvfA in training set T0547 587 :KQKKHILGE 1wvfA 490 :VKRKLEHAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80588 # 1wmhA.587.64 read from T0547.t04.many.frag # found chain 1wmhA in training set T0547 587 :KQKKHILGE 1wmhA 75 :LELEEAFRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80589 # 1otjA.588.216 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 588 :QKKHILGEL 1otjA 217 :ESEALLSFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80590 # 1a73A.588.6 read from T0547.t04.many.frag # found chain 1a73A in training set T0547 588 :QKKHILGEL 1a73A 7 :QILAVIDSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=80591 # 1ylqA.588.51 read from T0547.t04.many.frag # found chain 1ylqA in template set T0547 588 :QKKHILGEL 1ylqA 49 :RKLEFFGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80592 # 1zx1A.588.199 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 588 :QKKHILGEL 1zx1A 199 :ERKGMVAAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=80593 # 1sczA.588.210 read from T0547.t04.many.frag # found chain 1sczA in template set T0547 588 :QKKHILGEL 1sczA 382 :ESVGFLVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80594 # 1rwhA.588.326 read from T0547.t04.many.frag # found chain 1rwhA in training set T0547 588 :QKKHILGEL 1rwhA 327 :TAARWRGLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=80595 # 2dpmA.588.217 read from T0547.t04.many.frag # found chain 2dpmA in training set T0547 588 :QKKHILGEL 2dpmA 218 :DQVRLRDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80596 # 1u8xX.588.444 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 588 :QKKHILGEL 1u8xX 422 :VARLILEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80597 # 1x75A.588.107 read from T0547.t04.many.frag # found chain 1x75A in template set T0547 588 :QKKHILGEL 1x75A 470 :EHEKLLDEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80598 # 1ntyA.588.294 read from T0547.t04.many.frag # found chain 1ntyA in training set T0547 588 :QKKHILGEL 1ntyA 1519 :NKQDWIKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80599 # 1twfF.588.88 read from T0547.t04.many.frag # found chain 1twfF in template set Warning: unaligning (T0547)G594 (1twfF)G95 because H (helix) conformation "forbidden" or filtered. T0547 588 :QKKHIL 1twfF 89 :ERARIL T0547 595 :EL 1twfF 96 :TR Number of specific fragments extracted= 2 number of extra gaps= 1 total=80601 # 1uteA.588.160 read from T0547.t04.many.frag # found chain 1uteA in training set T0547 588 :QKKHILGEL 1uteA 161 :LARTQLAWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80602 # 1pmmA.588.432 read from T0547.t04.many.frag # found chain 1pmmA in template set T0547 588 :QKKHILGEL 1pmmA 433 :FAELLLEDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80603 # 1s29A.588.9 read from T0547.t04.many.frag # found chain 1s29A in training set T0547 588 :QKKHILGEL 1s29A 10 :NKQKLQKQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80604 # 1cfr.588.196 read from T0547.t04.many.frag # found chain 1cfr in template set T0547 588 :QKKHILGEL 1cfr 197 :RRLQLAHEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80605 # 1x9zA.588.148 read from T0547.t04.many.frag # found chain 1x9zA in template set T0547 588 :QKKHILGEL 1x9zA 576 :QAITLLADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80606 # 3cla.588.195 read from T0547.t04.many.frag # found chain 3cla in training set T0547 588 :QKKHILGEL 3cla 202 :HVARFINRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80607 # 1qysA.588.58 read from T0547.t04.many.frag # found chain 1qysA in template set T0547 588 :QKKHILGEL 1qysA 59 :EAEKFAAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80608 # 1tr0A.588.24 read from T0547.t04.many.frag # found chain 1tr0A in training set T0547 588 :QKKHILGEL 1tr0A 25 :QIDNYINDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80609 # 1vkpA.588.330 read from T0547.t04.many.frag # found chain 1vkpA in training set T0547 588 :QKKHILGEL 1vkpA 331 :RDKEAIRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80610 # 1vflA.588.337 read from T0547.t04.many.frag # found chain 1vflA in training set T0547 588 :QKKHILGEL 1vflA 336 :EKKELLDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80611 # 1v4pA.588.53 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 588 :QKKHILGEL 1v4pA 54 :EIREIERLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80612 # 1ngkA.588.107 read from T0547.t04.many.frag # found chain 1ngkA in template set T0547 588 :QKKHILGEL 1ngkA 108 :HRRELLDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80613 # 1wmhA.588.65 read from T0547.t04.many.frag # found chain 1wmhA in training set T0547 588 :QKKHILGEL 1wmhA 76 :ELEEAFRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80614 3fapB expands to /projects/compbio/data/pdb/3fap.pdb.gz 3fapB:# 3fapB.588.77 read from T0547.t04.many.frag # adding 3fapB to template set # found chain 3fapB in template set Warning: unaligning (T0547)K589 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)T187 Warning: unaligning (T0547)K590 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)T187 Warning: unaligning (T0547)I592 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)W190 Warning: unaligning (T0547)L593 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)W190 T0547 588 :Q 3fapB 185 :D T0547 591 :H 3fapB 188 :Q T0547 594 :GEL 3fapB 191 :DLY Number of specific fragments extracted= 3 number of extra gaps= 2 total=80617 # 1c3cA.588.368 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 588 :QKKHILGEL 1c3cA 370 :EAYDIVQRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80618 # 2ajtA.588.224 read from T0547.t04.many.frag # found chain 2ajtA in template set T0547 588 :QKKHILGEL 2ajtA 225 :DVNALVDEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80619 # 1t0tV.588.162 read from T0547.t04.many.frag # found chain 1t0tV in training set T0547 588 :QKKHILGEL 1t0tV 163 :QRRELMRAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80620 # 2bfwA.588.183 read from T0547.t04.many.frag # found chain 2bfwA in training set T0547 588 :QKKHILGEL 2bfwA 397 :DLSKFRENC Number of specific fragments extracted= 1 number of extra gaps= 0 total=80621 # 1jo0A.588.57 read from T0547.t04.many.frag # found chain 1jo0A in training set T0547 588 :QKKHILGEL 1jo0A 59 :TKQLIINAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80622 # 1otjA.589.217 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 589 :KKHILGELY 1otjA 218 :SEALLSFLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80623 # 1a73A.589.7 read from T0547.t04.many.frag # found chain 1a73A in training set T0547 589 :KKHILGELY 1a73A 8 :ILAVIDSWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80624 # 1ylqA.589.52 read from T0547.t04.many.frag # found chain 1ylqA in template set T0547 589 :KKHILGELY 1ylqA 50 :KLEFFGKIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80625 # 1zx1A.589.200 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 589 :KKHILGELY 1zx1A 200 :RKGMVAAWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80626 # 2dpmA.589.218 read from T0547.t04.many.frag # found chain 2dpmA in training set T0547 589 :KKHILGELY 2dpmA 219 :QVRLRDAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80627 # 1sczA.589.211 read from T0547.t04.many.frag # found chain 1sczA in template set T0547 589 :KKHILGELY 1sczA 383 :SVGFLVTIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80628 # 1u8xX.589.445 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 589 :KKHILGELY 1u8xX 423 :ARLILEDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80629 # 1v4pA.589.54 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 589 :KKHILGELY 1v4pA 55 :IREIERLAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80630 # 1x75A.589.108 read from T0547.t04.many.frag # found chain 1x75A in template set T0547 589 :KKHILGELY 1x75A 471 :HEKLLDEYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80631 # 1twfF.589.89 read from T0547.t04.many.frag # found chain 1twfF in template set T0547 589 :KKHILGELY 1twfF 90 :RARILGTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80632 # 1pmmA.589.433 read from T0547.t04.many.frag # found chain 1pmmA in template set T0547 589 :KKHILGELY 1pmmA 434 :AELLLEDYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80633 # 1uteA.589.161 read from T0547.t04.many.frag # found chain 1uteA in training set T0547 589 :KKHILGELY 1uteA 162 :ARTQLAWIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80634 # 1ntyA.589.295 read from T0547.t04.many.frag # found chain 1ntyA in training set T0547 589 :KKHILGELY 1ntyA 1520 :KQDWIKHIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80635 # 1s29A.589.10 read from T0547.t04.many.frag # found chain 1s29A in training set T0547 589 :KKHILGELY 1s29A 11 :KQKLQKQVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80636 # 1vkpA.589.331 read from T0547.t04.many.frag # found chain 1vkpA in training set T0547 589 :KKHILGELY 1vkpA 332 :DKEAIRVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80637 # 1qysA.589.59 read from T0547.t04.many.frag # found chain 1qysA in template set T0547 589 :KKHILGELY 1qysA 60 :AEKFAAILI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80638 # 1rwhA.589.327 read from T0547.t04.many.frag # found chain 1rwhA in training set T0547 589 :KKHILGELY 1rwhA 328 :AARWRGLCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80639 # 1x9zA.589.149 read from T0547.t04.many.frag # found chain 1x9zA in template set T0547 589 :KKHILGELY 1x9zA 577 :AITLLADVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80640 # 1tr0A.589.25 read from T0547.t04.many.frag # found chain 1tr0A in training set T0547 589 :KKHILGELY 1tr0A 26 :IDNYINDYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80641 # 1wmhA.589.66 read from T0547.t04.many.frag # found chain 1wmhA in training set T0547 589 :KKHILGELY 1wmhA 77 :LEEAFRLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80642 # 1vflA.589.338 read from T0547.t04.many.frag # found chain 1vflA in training set T0547 589 :KKHILGELY 1vflA 337 :KKELLDLLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80643 # 3cla.589.196 read from T0547.t04.many.frag # found chain 3cla in training set T0547 589 :KKHILGELY 3cla 203 :VARFINRLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80644 # 1ngkA.589.108 read from T0547.t04.many.frag # found chain 1ngkA in template set T0547 589 :KKHILGELY 1ngkA 109 :RRELLDYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80645 # 1aquA.589.274 read from T0547.t04.many.frag # found chain 1aquA in training set T0547 589 :KKHILGELY 1aquA 273 :RERFDEHYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80646 # 2ajtA.589.225 read from T0547.t04.many.frag # found chain 2ajtA in template set T0547 589 :KKHILGELY 2ajtA 226 :VNALVDEYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80647 # 1cfr.589.197 read from T0547.t04.many.frag # found chain 1cfr in template set T0547 589 :KKHILGELY 1cfr 198 :RLQLAHEGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80648 # 1c3cA.589.369 read from T0547.t04.many.frag # found chain 1c3cA in training set T0547 589 :KKHILGELY 1c3cA 371 :AYDIVQRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80649 # 2eucA.589.88 read from T0547.t04.many.frag # found chain 2eucA in template set T0547 589 :KKHILGELY 2eucA 89 :FETSKANAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80650 1wd6A expands to /projects/compbio/data/pdb/1wd6.pdb.gz 1wd6A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wd6A.589.78 read from T0547.t04.many.frag # adding 1wd6A to template set # found chain 1wd6A in template set T0547 589 :KKHILGELY 1wd6A 62 :ALAYLEKHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80651 # 2bfwA.589.184 read from T0547.t04.many.frag # found chain 2bfwA in training set T0547 589 :KKHILGELY 2bfwA 398 :LSKFRENCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80652 # 1otjA.590.218 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 590 :KHILGELYL 1otjA 219 :EALLSFLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80653 # 1a73A.590.8 read from T0547.t04.many.frag # found chain 1a73A in training set T0547 590 :KHILGELYL 1a73A 9 :LAVIDSWEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80654 # 1zx1A.590.201 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 590 :KHILGELYL 1zx1A 201 :KGMVAAWSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80655 # 2dpmA.590.219 read from T0547.t04.many.frag # found chain 2dpmA in training set T0547 590 :KHILGELYL 2dpmA 220 :VRLRDAFKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80656 # 1ylqA.590.53 read from T0547.t04.many.frag # found chain 1ylqA in template set T0547 590 :KHILGELYL 1ylqA 51 :LEFFGKITK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80657 # 1sczA.590.212 read from T0547.t04.many.frag # found chain 1sczA in template set T0547 590 :KHILGELYL 1sczA 384 :VGFLVTIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80658 # 1x75A.590.109 read from T0547.t04.many.frag # found chain 1x75A in template set T0547 590 :KHILGELYL 1x75A 472 :EKLLDEYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80659 # 1pmmA.590.434 read from T0547.t04.many.frag # found chain 1pmmA in template set T0547 590 :KHILGELYL 1pmmA 435 :ELLLEDYKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80660 # 1u8xX.590.446 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 590 :KHILGELYL 1u8xX 424 :RLILEDLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80661 # 1twfF.590.90 read from T0547.t04.many.frag # found chain 1twfF in template set T0547 590 :KHILGELYL 1twfF 91 :ARILGTRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80662 # 1uteA.590.162 read from T0547.t04.many.frag # found chain 1uteA in training set T0547 590 :KHILGELYL 1uteA 163 :RTQLAWIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80663 # 1ntyA.590.296 read from T0547.t04.many.frag # found chain 1ntyA in training set T0547 590 :KHILGELYL 1ntyA 1521 :QDWIKHIRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80664 # 1x9zA.590.150 read from T0547.t04.many.frag # found chain 1x9zA in template set T0547 590 :KHILGELYL 1x9zA 578 :ITLLADVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=80665 # 2ajtA.590.226 read from T0547.t04.many.frag # found chain 2ajtA in template set T0547 590 :KHILGELYL 2ajtA 227 :NALVDEYES Number of specific fragments extracted= 1 number of extra gaps= 0 total=80666 # 1v4pA.590.55 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 590 :KHILGELYL 1v4pA 56 :REIERLANE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80667 # 3cla.590.197 read from T0547.t04.many.frag # found chain 3cla in training set T0547 590 :KHILGELYL 3cla 204 :ARFINRLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80668 # 1tr0A.590.26 read from T0547.t04.many.frag # found chain 1tr0A in training set T0547 590 :KHILGELYL 1tr0A 27 :DNYINDYTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80669 # 1vkpA.590.332 read from T0547.t04.many.frag # found chain 1vkpA in training set T0547 590 :KHILGELYL 1vkpA 333 :KEAIRVLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80670 # 1wd6A.590.79 read from T0547.t04.many.frag # found chain 1wd6A in template set T0547 590 :KHILGELYL 1wd6A 63 :LAYLEKHTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80671 # 1s29A.590.11 read from T0547.t04.many.frag # found chain 1s29A in training set T0547 590 :KHILGELYL 1s29A 12 :QKLQKQVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80672 # 2f5tX.590.115 read from T0547.t04.many.frag # found chain 2f5tX in training set T0547 590 :KHILGELYL 2f5tX 225 :FSQYSLIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80673 # 1b43A.590.315 read from T0547.t04.many.frag # found chain 1b43A in template set T0547 590 :KHILGELYL 1b43A 315 :KNGLERLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80674 # 2b8iA.590.64 read from T0547.t04.many.frag # found chain 2b8iA in training set T0547 590 :KHILGELYL 2b8iA 65 :SNAVDSVVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80675 # 1qysA.590.60 read from T0547.t04.many.frag # found chain 1qysA in template set T0547 590 :KHILGELYL 1qysA 61 :EKFAAILIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80676 # 2bfwA.590.185 read from T0547.t04.many.frag # found chain 2bfwA in training set T0547 590 :KHILGELYL 2bfwA 399 :SKFRENCKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80677 # 1vflA.590.339 read from T0547.t04.many.frag # found chain 1vflA in training set T0547 590 :KHILGELYL 1vflA 338 :KELLDLLYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80678 # 1ngkA.590.109 read from T0547.t04.many.frag # found chain 1ngkA in template set T0547 590 :KHILGELYL 1ngkA 110 :RELLDYLEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=80679 # 1wmhA.590.67 read from T0547.t04.many.frag # found chain 1wmhA in training set T0547 590 :KHILGELYL 1wmhA 78 :EEAFRLYEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80680 # 1gxqA.590.72 read from T0547.t04.many.frag # found chain 1gxqA in template set T0547 590 :KHILGELYL 1gxqA 196 :DVHIRRLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80681 # 1ng6A.590.119 read from T0547.t04.many.frag # found chain 1ng6A in training set T0547 590 :KHILGELYL 1ng6A 120 :GKVMGAIMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=80682 # 1otjA.591.219 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 591 :HILGELYLF 1otjA 220 :ALLSFLFAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80683 # 1a73A.591.9 read from T0547.t04.many.frag # found chain 1a73A in training set T0547 591 :HILGELYLF 1a73A 10 :AVIDSWEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=80684 # 2dpmA.591.220 read from T0547.t04.many.frag # found chain 2dpmA in training set T0547 591 :HILGELYLF 2dpmA 221 :RLRDAFKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80685 # 1zx1A.591.202 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 591 :HILGELYLF 1zx1A 202 :GMVAAWSQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80686 # 1ylqA.591.54 read from T0547.t04.many.frag # found chain 1ylqA in template set T0547 591 :HILGELYLF 1ylqA 52 :EFFGKITKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80687 # 1sczA.591.213 read from T0547.t04.many.frag # found chain 1sczA in template set T0547 591 :HILGELYLF 1sczA 385 :GFLVTIKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80688 # 1u8xX.591.447 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 591 :HILGELYLF 1u8xX 425 :LILEDLVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80689 # 1v4pA.591.56 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 591 :HILGELYLF 1v4pA 57 :EIERLANEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80690 # 1vkpA.591.333 read from T0547.t04.many.frag # found chain 1vkpA in training set T0547 591 :HILGELYLF 1vkpA 334 :EAIRVLSDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80691 # 1pmmA.591.435 read from T0547.t04.many.frag # found chain 1pmmA in template set T0547 591 :HILGELYLF 1pmmA 436 :LLLEDYKAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80692 # 1x75A.591.110 read from T0547.t04.many.frag # found chain 1x75A in template set T0547 591 :HILGELYLF 1x75A 473 :KLLDEYKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80693 # 1twfF.591.91 read from T0547.t04.many.frag # found chain 1twfF in template set T0547 591 :HILGELYLF 1twfF 92 :RILGTRALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80694 # 1uteA.591.163 read from T0547.t04.many.frag # found chain 1uteA in training set T0547 591 :HILGELYLF 1uteA 164 :TQLAWIKKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80695 # 1ntyA.591.297 read from T0547.t04.many.frag # found chain 1ntyA in training set T0547 591 :HILGELYLF 1ntyA 1522 :DWIKHIREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80696 # 1tr0A.591.27 read from T0547.t04.many.frag # found chain 1tr0A in training set T0547 591 :HILGELYLF 1tr0A 28 :NYINDYTNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80697 # 1qysA.591.61 read from T0547.t04.many.frag # found chain 1qysA in template set T0547 591 :HILGELYLF 1qysA 62 :KFAAILIKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80698 # 1s29A.591.12 read from T0547.t04.many.frag # found chain 1s29A in training set T0547 591 :HILGELYLF 1s29A 13 :KLQKQVEFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80699 # 1x9zA.591.151 read from T0547.t04.many.frag # found chain 1x9zA in template set T0547 591 :HILGELYLF 1x9zA 579 :TLLADVERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80700 # 3cla.591.198 read from T0547.t04.many.frag # found chain 3cla in training set T0547 591 :HILGELYLF 3cla 205 :RFINRLQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80701 # 2ajtA.591.227 read from T0547.t04.many.frag # found chain 2ajtA in template set T0547 591 :HILGELYLF 2ajtA 228 :ALVDEYESC Number of specific fragments extracted= 1 number of extra gaps= 0 total=80702 # 1wd6A.591.80 read from T0547.t04.many.frag # found chain 1wd6A in template set T0547 591 :HILGELYLF 1wd6A 64 :AYLEKHTAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80703 # 2eucA.591.90 read from T0547.t04.many.frag # found chain 2eucA in template set T0547 591 :HILGELYLF 2eucA 91 :TSKANAHAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80704 # 1b43A.591.316 read from T0547.t04.many.frag # found chain 1b43A in template set T0547 591 :HILGELYLF 1b43A 316 :NGLERLKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80705 # 1ngkA.591.110 read from T0547.t04.many.frag # found chain 1ngkA in template set T0547 591 :HILGELYLF 1ngkA 111 :ELLDYLEMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80706 # 1cqmA.591.20 read from T0547.t04.many.frag # found chain 1cqmA in training set T0547 591 :HILGELYLF 1cqmA 21 :LEKEIIQRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80707 # 2b8iA.591.65 read from T0547.t04.many.frag # found chain 2b8iA in training set T0547 591 :HILGELYLF 2b8iA 66 :NAVDSVVQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80708 # 1vflA.591.340 read from T0547.t04.many.frag # found chain 1vflA in training set T0547 591 :HILGELYLF 1vflA 339 :ELLDLLYKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80709 # 1ltzA.591.172 read from T0547.t04.many.frag # found chain 1ltzA in training set T0547 591 :HILGELYLF 1ltzA 173 :PMLARLYWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80710 # 1ng6A.591.120 read from T0547.t04.many.frag # found chain 1ng6A in training set T0547 591 :HILGELYLF 1ng6A 121 :KVMGAIMPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80711 # 2f5tX.591.116 read from T0547.t04.many.frag # found chain 2f5tX in training set T0547 591 :HILGELYLF 2f5tX 226 :SQYSLIIEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80712 # 1otjA.592.220 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 592 :ILGELYLFL 1otjA 221 :LLSFLFAHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80713 # 1a73A.592.10 read from T0547.t04.many.frag # found chain 1a73A in training set T0547 592 :ILGELYLFL 1a73A 11 :VIDSWEETV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80714 # 2dpmA.592.221 read from T0547.t04.many.frag # found chain 2dpmA in training set T0547 592 :ILGELYLFL 2dpmA 222 :LRDAFKRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80715 # 1zx1A.592.203 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 592 :ILGELYLFL 1zx1A 203 :MVAAWSQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80716 # 1ylqA.592.55 read from T0547.t04.many.frag # found chain 1ylqA in template set T0547 592 :ILGELYLFL 1ylqA 53 :FFGKITKKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80717 # 1v4pA.592.57 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 592 :ILGELYLFL 1v4pA 58 :IERLANEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80718 # 1u8xX.592.448 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 592 :ILGELYLFL 1u8xX 426 :ILEDLVEAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80719 # 1sczA.592.214 read from T0547.t04.many.frag # found chain 1sczA in template set T0547 592 :ILGELYLFL 1sczA 386 :FLVTIKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80720 # 1vkpA.592.334 read from T0547.t04.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)L600 (1vkpA)F343 because D (zeta) conformation "forbidden" or filtered. T0547 592 :ILGELYLF 1vkpA 335 :AIRVLSDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=80721 # 2f5tX.592.117 read from T0547.t04.many.frag # found chain 2f5tX in training set T0547 592 :ILGELYLFL 2f5tX 227 :QYSLIIEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80722 # 1uteA.592.164 read from T0547.t04.many.frag # found chain 1uteA in training set T0547 592 :ILGELYLFL 1uteA 165 :QLAWIKKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80723 # 1wd6A.592.81 read from T0547.t04.many.frag # found chain 1wd6A in template set T0547 592 :ILGELYLFL 1wd6A 65 :YLEKHTARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80724 # 1qysA.592.62 read from T0547.t04.many.frag # found chain 1qysA in template set T0547 592 :ILGELYLFL 1qysA 63 :FAAILIKVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80725 # 1ftrA.592.181 read from T0547.t04.many.frag # found chain 1ftrA in training set T0547 592 :ILGELYLFL 1ftrA 182 :AAEAAVDAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80726 # 1ltzA.592.173 read from T0547.t04.many.frag # found chain 1ltzA in training set T0547 592 :ILGELYLFL 1ltzA 174 :MLARLYWYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80727 # 1ntyA.592.298 read from T0547.t04.many.frag # found chain 1ntyA in training set T0547 592 :ILGELYLFL 1ntyA 1523 :WIKHIREVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80728 # 1pmmA.592.436 read from T0547.t04.many.frag # found chain 1pmmA in template set T0547 592 :ILGELYLFL 1pmmA 437 :LLEDYKASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80729 # 1twfF.592.92 read from T0547.t04.many.frag # found chain 1twfF in template set T0547 592 :ILGELYLFL 1twfF 93 :ILGTRALQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80730 # 1cqmA.592.21 read from T0547.t04.many.frag # found chain 1cqmA in training set T0547 592 :ILGELYLFL 1cqmA 22 :EKEIIQRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80731 # 1ak0.592.171 read from T0547.t04.many.frag # found chain 1ak0 in training set T0547 592 :ILGELYLFL 1ak0 172 :WAKTLVQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80732 # 1tr0A.592.28 read from T0547.t04.many.frag # found chain 1tr0A in training set T0547 592 :ILGELYLFL 1tr0A 29 :YINDYTNLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80733 # 1gxqA.592.74 read from T0547.t04.many.frag # found chain 1gxqA in template set T0547 592 :ILGELYLFL 1gxqA 198 :HIRRLRKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80734 # 1b43A.592.317 read from T0547.t04.many.frag # found chain 1b43A in template set T0547 592 :ILGELYLFL 1b43A 317 :GLERLKKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80735 # 1x75A.592.111 read from T0547.t04.many.frag # found chain 1x75A in template set T0547 592 :ILGELYLFL 1x75A 474 :LLDEYKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80736 # 1ds1A.592.246 read from T0547.t04.many.frag # found chain 1ds1A in training set T0547 592 :ILGELYLFL 1ds1A 247 :AVAALSKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80737 # 2eucA.592.91 read from T0547.t04.many.frag # found chain 2eucA in template set T0547 592 :ILGELYLFL 2eucA 92 :SKANAHAFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80738 # 2mhr.592.98 read from T0547.t04.many.frag # found chain 2mhr in training set T0547 592 :ILGELYLFL 2mhr 99 :CKEWLVNHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80739 # 2a2fX.592.223 read from T0547.t04.many.frag # found chain 2a2fX in template set T0547 592 :ILGELYLFL 2a2fX 224 :MISYLKSTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80740 # 3cla.592.199 read from T0547.t04.many.frag # found chain 3cla in training set T0547 592 :ILGELYLFL 3cla 206 :FINRLQELC Number of specific fragments extracted= 1 number of extra gaps= 0 total=80741 # 2bfwA.592.187 read from T0547.t04.many.frag # found chain 2bfwA in training set T0547 592 :ILGELYLFL 2bfwA 401 :FRENCKKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80742 # 1otjA.593.221 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 593 :LGELYLFLN 1otjA 222 :LSFLFAHIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80743 # 2dpmA.593.222 read from T0547.t04.many.frag # found chain 2dpmA in training set T0547 593 :LGELYLFLN 2dpmA 223 :RDAFKRLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80744 # 1a73A.593.11 read from T0547.t04.many.frag # found chain 1a73A in training set T0547 593 :LGELYLFLN 1a73A 12 :IDSWEETVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80745 # 1ylqA.593.56 read from T0547.t04.many.frag # found chain 1ylqA in template set T0547 593 :LGELYLFLN 1ylqA 54 :FGKITKKFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80746 # 1zx1A.593.204 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 593 :LGELYLFLN 1zx1A 204 :VAAWSQRLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80747 # 1v4pA.593.58 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 593 :LGELYLFLN 1v4pA 59 :ERLANEKVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80748 # 1vkpA.593.335 read from T0547.t04.many.frag # found chain 1vkpA in training set T0547 593 :LGELYLFLN 1vkpA 336 :IRVLSDTFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=80749 # 1sczA.593.215 read from T0547.t04.many.frag # found chain 1sczA in template set T0547 593 :LGELYLFLN 1sczA 387 :LVTIKELLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80750 # 1u8xX.593.449 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 593 :LGELYLFLN 1u8xX 427 :LEDLVEANK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80751 # 1wd6A.593.82 read from T0547.t04.many.frag # found chain 1wd6A in template set T0547 593 :LGELYLFLN 1wd6A 66 :LEKHTARLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80752 # 2f5tX.593.118 read from T0547.t04.many.frag # found chain 2f5tX in training set T0547 593 :LGELYLFLN 2f5tX 228 :YSLIIEIFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80753 # 3cla.593.200 read from T0547.t04.many.frag # found chain 3cla in training set T0547 593 :LGELYLFLN 3cla 207 :INRLQELCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80754 # 1ftrA.593.182 read from T0547.t04.many.frag # found chain 1ftrA in training set T0547 593 :LGELYLFLN 1ftrA 183 :AEAAVDAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80755 # 1uteA.593.165 read from T0547.t04.many.frag # found chain 1uteA in training set T0547 593 :LGELYLFLN 1uteA 166 :LAWIKKQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80756 # 1gxqA.593.75 read from T0547.t04.many.frag # found chain 1gxqA in template set T0547 593 :LGELYLFLN 1gxqA 199 :IRRLRKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80757 # 1ds1A.593.247 read from T0547.t04.many.frag # found chain 1ds1A in training set T0547 593 :LGELYLFLN 1ds1A 248 :VAALSKALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80758 # 1qysA.593.63 read from T0547.t04.many.frag # found chain 1qysA in template set T0547 593 :LGELYLFLN 1qysA 64 :AAILIKVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80759 # 1aquA.593.278 read from T0547.t04.many.frag # found chain 1aquA in training set T0547 593 :LGELYLFLN 1aquA 277 :DEHYKQQMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80760 # 1ltzA.593.174 read from T0547.t04.many.frag # found chain 1ltzA in training set T0547 593 :LGELYLFLN 1ltzA 175 :LARLYWYTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80761 # 1k8qA.593.331 read from T0547.t04.many.frag # found chain 1k8qA in template set T0547 593 :LGELYLFLN 1k8qA 332 :VDLLLSKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=80762 # 1cqmA.593.22 read from T0547.t04.many.frag # found chain 1cqmA in training set T0547 593 :LGELYLFLN 1cqmA 23 :KEIIQRALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80763 # 1ak0.593.172 read from T0547.t04.many.frag # found chain 1ak0 in training set T0547 593 :LGELYLFLN 1ak0 173 :AKTLVQNIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80764 # 1tr0A.593.29 read from T0547.t04.many.frag # found chain 1tr0A in training set T0547 593 :LGELYLFLN 1tr0A 30 :INDYTNLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80765 # 1ntyA.593.299 read from T0547.t04.many.frag # found chain 1ntyA in training set T0547 593 :LGELYLFLN 1ntyA 1524 :IKHIREVIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80766 # 1x75A.593.112 read from T0547.t04.many.frag # found chain 1x75A in template set T0547 593 :LGELYLFLN 1x75A 475 :LDEYKELLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80767 # 1wrvA.593.283 read from T0547.t04.many.frag # found chain 1wrvA in training set T0547 593 :LGELYLFLN 1wrvA 284 :REVYLEAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80768 # 1ycdA.593.230 read from T0547.t04.many.frag # found chain 1ycdA in training set Warning: unaligning (T0547)N601 because last residue in template chain is (1ycdA)Q239 T0547 593 :LGELYLFL 1ycdA 231 :VEQITSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80769 # 2a2fX.593.224 read from T0547.t04.many.frag # found chain 2a2fX in template set T0547 593 :LGELYLFLN 2a2fX 225 :ISYLKSTFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80770 # 2mhr.593.99 read from T0547.t04.many.frag # found chain 2mhr in training set T0547 593 :LGELYLFLN 2mhr 100 :KEWLVNHIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80771 # 1pmmA.593.437 read from T0547.t04.many.frag # found chain 1pmmA in template set T0547 593 :LGELYLFLN 1pmmA 438 :LEDYKASLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80772 # 1otjA.594.222 read from T0547.t04.many.frag # found chain 1otjA in template set Warning: unaligning (T0547)D602 (1otjA)K231 because P (beta_P) conformation "forbidden" or filtered. T0547 594 :GELYLFLN 1otjA 223 :SFLFAHIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=80773 # 1a73A.594.12 read from T0547.t04.many.frag # found chain 1a73A in training set T0547 594 :GELYLFLND 1a73A 13 :DSWEETVGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80774 # 1ylqA.594.57 read from T0547.t04.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)N601 (1ylqA)F62 because P (beta_P) conformation "forbidden" or filtered. T0547 594 :GELYLFL 1ylqA 55 :GKITKKF T0547 602 :D 1ylqA 63 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=80776 # 2dpmA.594.223 read from T0547.t04.many.frag # found chain 2dpmA in training set T0547 594 :GELYLFLND 2dpmA 224 :DAFKRLSDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80777 # 1vkpA.594.336 read from T0547.t04.many.frag # found chain 1vkpA in training set T0547 594 :GELYLFLND 1vkpA 337 :RVLSDTFPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80778 # 1zx1A.594.205 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 594 :GELYLFLND 1zx1A 205 :AAWSQRLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80779 # 1v4pA.594.59 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 594 :GELYLFLND 1v4pA 60 :RLANEKVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80780 # 1wd6A.594.83 read from T0547.t04.many.frag # found chain 1wd6A in template set T0547 594 :GELYLFLND 1wd6A 67 :EKHTARLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80781 # 1sczA.594.216 read from T0547.t04.many.frag # found chain 1sczA in template set Warning: unaligning (T0547)D602 (1sczA)D396 because D (zeta) conformation "forbidden" or filtered. T0547 594 :GELYLFLN 1sczA 388 :VTIKELLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=80782 # 1u8xX.594.450 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 594 :GELYLFLND 1u8xX 428 :EDLVEANKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80783 # 2f5tX.594.119 read from T0547.t04.many.frag # found chain 2f5tX in training set T0547 594 :GELYLFLND 2f5tX 229 :SLIIEIFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80784 # 1ftrA.594.183 read from T0547.t04.many.frag # found chain 1ftrA in training set T0547 594 :GELYLFLND 1ftrA 184 :EAAVDAIKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80785 # 1aquA.594.279 read from T0547.t04.many.frag # found chain 1aquA in training set T0547 594 :GELYLFLND 1aquA 278 :EHYKQQMKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80786 # 1k8qA.594.332 read from T0547.t04.many.frag # found chain 1k8qA in template set T0547 594 :GELYLFLND 1k8qA 333 :DLLLSKLPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80787 # 1gxqA.594.76 read from T0547.t04.many.frag # found chain 1gxqA in template set T0547 594 :GELYLFLND 1gxqA 200 :RRLRKALEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=80788 # 1ltzA.594.175 read from T0547.t04.many.frag # found chain 1ltzA in training set T0547 594 :GELYLFLND 1ltzA 176 :ARLYWYTVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80789 # 1qysA.594.64 read from T0547.t04.many.frag # found chain 1qysA in template set T0547 594 :GELYLFLND 1qysA 65 :AILIKVFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80790 # 1y9lA.594.77 read from T0547.t04.many.frag # found chain 1y9lA in training set T0547 594 :GELYLFLND 1y9lA 105 :DKLFSMLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=80791 # 1uvjA.594.591 read from T0547.t04.many.frag # found chain 1uvjA in template set T0547 594 :GELYLFLND 1uvjA 592 :KRDTLELSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80792 # 2a2fX.594.225 read from T0547.t04.many.frag # found chain 2a2fX in template set T0547 594 :GELYLFLND 2a2fX 226 :SYLKSTFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80793 # 1ds1A.594.248 read from T0547.t04.many.frag # found chain 1ds1A in training set T0547 594 :GELYLFLND 1ds1A 249 :AALSKALDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80794 # 3cla.594.201 read from T0547.t04.many.frag # found chain 3cla in training set T0547 594 :GELYLFLND 3cla 208 :NRLQELCNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=80795 # 1uteA.594.166 read from T0547.t04.many.frag # found chain 1uteA in training set T0547 594 :GELYLFLND 1uteA 167 :AWIKKQLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80796 # 1cqmA.594.23 read from T0547.t04.many.frag # found chain 1cqmA in training set T0547 594 :GELYLFLND 1cqmA 24 :EIIQRALEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80797 # 2eucA.594.93 read from T0547.t04.many.frag # found chain 2eucA in template set Warning: unaligning (T0547)N601 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2eucA)A107 T0547 594 :GELYLFL 2eucA 94 :ANAHAFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80798 # 1t95A.594.220 read from T0547.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)D602 (1t95A)G229 because T (delta_L) conformation "forbidden" or filtered. T0547 594 :GELYLFLN 1t95A 221 :DLLGKVAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=80799 # 1tr0A.594.30 read from T0547.t04.many.frag # found chain 1tr0A in training set T0547 594 :GELYLFLND 1tr0A 31 :NDYTNLLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80800 # 1j5uA.594.73 read from T0547.t04.many.frag # found chain 1j5uA in template set T0547 594 :GELYLFLND 1j5uA 68 :NDWILEISK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80801 # 1eyqA.594.132 read from T0547.t04.many.frag # found chain 1eyqA in template set T0547 594 :GELYLFLND 1eyqA 133 :QKFAEAFKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=80802 # 1ak0.594.173 read from T0547.t04.many.frag # found chain 1ak0 in training set T0547 594 :GELYLFLND 1ak0 174 :KTLVQNIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=80803 # 1otjA.595.223 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 595 :ELYLFLNDN 1otjA 224 :FLFAHITKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=80804 # 1a73A.595.13 read from T0547.t04.many.frag # found chain 1a73A in training set Warning: unaligning (T0547)N603 (1a73A)F22 because P (beta_P) conformation "forbidden" or filtered. T0547 595 :ELYLFLND 1a73A 14 :SWEETVGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=80805 # 1ylqA.595.58 read from T0547.t04.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)D602 (1ylqA)D63 because L (left) conformation "forbidden" or filtered. T0547 595 :ELYLFLN 1ylqA 56 :KITKKFF T0547 603 :N 1ylqA 64 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=80807 # 1vkpA.595.337 read from T0547.t04.many.frag # found chain 1vkpA in training set T0547 595 :ELYLFLNDN 1vkpA 338 :VLSDTFPHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80808 # 1v4pA.595.60 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 595 :ELYLFLNDN 1v4pA 61 :LANEKVKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80809 # 2dpmA.595.224 read from T0547.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)N603 (2dpmA)G233 because T (delta_L) conformation "forbidden" or filtered. T0547 595 :ELYLFLND 2dpmA 225 :AFKRLSDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=80810 # 1k8qA.595.333 read from T0547.t04.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)N603 (1k8qA)L342 because P (beta_P) conformation "forbidden" or filtered. T0547 595 :ELYLFLND 1k8qA 334 :LLLSKLPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=80811 # 1zx1A.595.206 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 595 :ELYLFLNDN 1zx1A 206 :AWSQRLQTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80812 # 1wd6A.595.84 read from T0547.t04.many.frag # found chain 1wd6A in template set T0547 595 :ELYLFLNDN 1wd6A 68 :KHTARLKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80813 # 1aquA.595.280 read from T0547.t04.many.frag # found chain 1aquA in training set T0547 595 :ELYLFLNDN 1aquA 279 :HYKQQMKDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=80814 # 1ftrA.595.184 read from T0547.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)N603 (1ftrA)V193 because P (beta_P) conformation "forbidden" or filtered. T0547 595 :ELYLFLND 1ftrA 185 :AAVDAIKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=80815 # 2f5tX.595.120 read from T0547.t04.many.frag # found chain 2f5tX in training set T0547 595 :ELYLFLNDN 2f5tX 230 :LIIEIFKES Number of specific fragments extracted= 1 number of extra gaps= 0 total=80816 # 1sczA.595.217 read from T0547.t04.many.frag # found chain 1sczA in template set T0547 595 :ELYLFLNDN 1sczA 389 :TIKELLEDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=80817 # 1y9lA.595.78 read from T0547.t04.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)N603 (1y9lA)G114 because S (epsilon) conformation "forbidden" or filtered. T0547 595 :ELYLFLND 1y9lA 106 :KLFSMLKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=80818 # 1u8xX.595.451 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 595 :ELYLFLNDN 1u8xX 429 :DLVEANKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80819 # 1ds1A.595.249 read from T0547.t04.many.frag # found chain 1ds1A in training set T0547 595 :ELYLFLNDN 1ds1A 250 :ALSKALDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80820 # 3cla.595.202 read from T0547.t04.many.frag # found chain 3cla in training set T0547 595 :ELYLFLNDN 3cla 209 :RLQELCNSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80821 # 1j5uA.595.74 read from T0547.t04.many.frag # found chain 1j5uA in template set Warning: unaligning (T0547)N603 (1j5uA)G77 because T (delta_L) conformation "forbidden" or filtered. T0547 595 :ELYLFLND 1j5uA 69 :DWILEISK Number of specific fragments extracted= 1 number of extra gaps= 1 total=80822 # 1gxqA.595.77 read from T0547.t04.many.frag # found chain 1gxqA in template set T0547 595 :ELYLFLNDN 1gxqA 201 :RLRKALEPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80823 # 1t95A.595.221 read from T0547.t04.many.frag # found chain 1t95A in template set T0547 595 :ELYLFLNDN 1t95A 222 :LLGKVAKGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80824 # 1qcsA.595.123 read from T0547.t04.many.frag # found chain 1qcsA in template set Warning: unaligning (T0547)D602 (1qcsA)N127 because L (left) conformation "forbidden" or filtered. T0547 595 :ELYLFLN 1qcsA 120 :EFIQQFN T0547 603 :N 1qcsA 128 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=80826 # 1eyqA.595.133 read from T0547.t04.many.frag # found chain 1eyqA in template set T0547 595 :ELYLFLNDN 1eyqA 134 :KFAEAFKPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80827 # 1ak0.595.174 read from T0547.t04.many.frag # found chain 1ak0 in training set T0547 595 :ELYLFLNDN 1ak0 175 :TLVQNIESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80828 # 1cqmA.595.24 read from T0547.t04.many.frag # found chain 1cqmA in training set T0547 595 :ELYLFLNDN 1cqmA 25 :IIQRALENY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80829 # 1uvjA.595.592 read from T0547.t04.many.frag # found chain 1uvjA in template set T0547 595 :ELYLFLNDN 1uvjA 593 :RDTLELSRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80830 # 1a3aA.595.138 read from T0547.t04.many.frag # found chain 1a3aA in training set T0547 595 :ELYLFLNDN 1a3aA 139 :EVLELLAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80831 # 1ltzA.595.176 read from T0547.t04.many.frag # found chain 1ltzA in training set Warning: unaligning (T0547)F599 (1ltzA)Y181 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N603 (1ltzA)F185 because G (3-10) conformation "forbidden" or filtered. T0547 595 :ELYL 1ltzA 177 :RLYW T0547 600 :LND 1ltzA 182 :TVE Number of specific fragments extracted= 2 number of extra gaps= 2 total=80833 # 1v6sA.595.298 read from T0547.t04.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)D602 (1v6sA)G306 because T (delta_L) conformation "forbidden" or filtered. T0547 595 :ELYLFLN 1v6sA 299 :AFARALE T0547 603 :N 1v6sA 307 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=80835 1g9gA expands to /projects/compbio/data/pdb/1g9g.pdb.gz 1g9gA:Skipped atom 331, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 333, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 335, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 337, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 339, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 341, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 343, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 345, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 354, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 356, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 358, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 360, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 362, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 364, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 366, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 368, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 370, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 418, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 420, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 422, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 424, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 426, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 428, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 430, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 452, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 454, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 456, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 458, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 460, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 462, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 464, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 466, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 468, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 739, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 741, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 743, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 745, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 747, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 749, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 751, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 753, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1536, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1538, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1540, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1542, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1544, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1546, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1548, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1757, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1759, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1761, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1763, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1765, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1767, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1769, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1847, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1849, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1851, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1853, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1855, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1857, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1859, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1861, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1863, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 3232, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 3234, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 3236, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 3238, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 3240, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 3242, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 3244, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4797, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4799, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4801, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4803, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4805, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4807, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4809, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4811, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4974, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4976, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4978, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4980, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4982, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4984, because occupancy 0.500 <= existing 0.500 in 1g9gA # 1g9gA.595.439 read from T0547.t04.many.frag # adding 1g9gA to template set # found chain 1g9gA in template set T0547 595 :ELYLFLNDN 1g9gA 440 :KWAKWINGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80836 # 2a2fX.595.226 read from T0547.t04.many.frag # found chain 2a2fX in template set T0547 595 :ELYLFLNDN 2a2fX 227 :YLKSTFDSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80837 # 1otjA.596.224 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 596 :LYLFLNDNG 1otjA 225 :LFAHITKPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80838 # 1a73A.596.14 read from T0547.t04.many.frag # found chain 1a73A in training set Warning: unaligning (T0547)G604 (1a73A)P23 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1a73A 15 :WEETVGQF Number of specific fragments extracted= 1 number of extra gaps= 1 total=80839 # 1ylqA.596.59 read from T0547.t04.many.frag # found chain 1ylqA in template set T0547 596 :LYLFLNDNG 1ylqA 57 :ITKKFFDSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=80840 # 1y9lA.596.79 read from T0547.t04.many.frag # found chain 1y9lA in training set T0547 596 :LYLFLNDNG 1y9lA 107 :LFSMLKDGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80841 # 2f5tX.596.121 read from T0547.t04.many.frag # found chain 2f5tX in training set T0547 596 :LYLFLNDNG 2f5tX 231 :IIEIFKEST Number of specific fragments extracted= 1 number of extra gaps= 0 total=80842 # 1aquA.596.281 read from T0547.t04.many.frag # found chain 1aquA in training set Warning: unaligning (T0547)N603 (1aquA)C287 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLND 1aquA 280 :YKQQMKD T0547 604 :G 1aquA 288 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=80844 # 1v4pA.596.61 read from T0547.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0547)N603 (1v4pA)N69 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1v4pA)A70 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLND 1v4pA 62 :ANEKVKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=80845 # 1t95A.596.222 read from T0547.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)N601 (1t95A)K228 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D602 (1t95A)G229 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1t95A)A231 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFL 1t95A 223 :LGKVA T0547 603 :N 1t95A 230 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=80847 # 1ftrA.596.185 read from T0547.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)G604 (1ftrA)E194 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1ftrA 186 :AVDAIKGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=80848 # 1j5uA.596.75 read from T0547.t04.many.frag # found chain 1j5uA in template set T0547 596 :LYLFLNDNG 1j5uA 70 :WILEISKGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=80849 # 2dpmA.596.225 read from T0547.t04.many.frag # found chain 2dpmA in training set T0547 596 :LYLFLNDNG 2dpmA 226 :FKRLSDTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80850 # 1qcsA.596.124 read from T0547.t04.many.frag # found chain 1qcsA in template set Warning: unaligning (T0547)D602 (1qcsA)N127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N603 (1qcsA)Q128 because E (beta_S) conformation "forbidden" or filtered. T0547 596 :LYLFLN 1qcsA 121 :FIQQFN T0547 604 :G 1qcsA 129 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=80852 # 1vkpA.596.338 read from T0547.t04.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)G604 (1vkpA)S347 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1vkpA 339 :LSDTFPHH Number of specific fragments extracted= 1 number of extra gaps= 1 total=80853 # 1zx1A.596.207 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 596 :LYLFLNDNG 1zx1A 207 :WSQRLQTIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=80854 # 1k8qA.596.334 read from T0547.t04.many.frag # found chain 1k8qA in template set T0547 596 :LYLFLNDNG 1k8qA 335 :LLSKLPNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80855 # 1ds1A.596.250 read from T0547.t04.many.frag # found chain 1ds1A in training set T0547 596 :LYLFLNDNG 1ds1A 251 :LSKALDEVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80856 # 1a3aA.596.139 read from T0547.t04.many.frag # found chain 1a3aA in training set Warning: unaligning (T0547)G604 because last residue in template chain is (1a3aA)K148 T0547 596 :LYLFLNDN 1a3aA 140 :VLELLAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=80857 # 1uvjA.596.593 read from T0547.t04.many.frag # found chain 1uvjA in template set T0547 596 :LYLFLNDNG 1uvjA 594 :DTLELSRYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80858 # 1olzA.596.311 read from T0547.t04.many.frag # found chain 1olzA in template set T0547 596 :LYLFLNDNG 1olzA 312 :AEEVFSHGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80859 # 1g9gA.596.440 read from T0547.t04.many.frag # found chain 1g9gA in template set Warning: unaligning (T0547)G604 (1g9gA)I449 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1g9gA 441 :WAKWINGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=80860 # 1wd6A.596.85 read from T0547.t04.many.frag # found chain 1wd6A in template set T0547 596 :LYLFLNDNG 1wd6A 69 :HTARLKNLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=80861 # 1sczA.596.218 read from T0547.t04.many.frag # found chain 1sczA in template set Warning: unaligning (T0547)D602 (1sczA)D396 because D (zeta) conformation "forbidden" or filtered. T0547 596 :LYLFLN 1sczA 390 :IKELLE T0547 603 :NG 1sczA 397 :PT Number of specific fragments extracted= 2 number of extra gaps= 1 total=80863 # 1eyqA.596.134 read from T0547.t04.many.frag # found chain 1eyqA in template set T0547 596 :LYLFLNDNG 1eyqA 135 :FAEAFKPVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80864 # 1ursA.596.218 read from T0547.t04.many.frag # found chain 1ursA in training set T0547 596 :LYLFLNDNG 1ursA 219 :MRDMVSKYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=80865 1g4mA expands to /projects/compbio/data/pdb/1g4m.pdb.gz 1g4mA:# 1g4mA.596.103 read from T0547.t04.many.frag # adding 1g4mA to template set # found chain 1g4mA in template set T0547 596 :LYLFLNDNG 1g4mA 104 :LIKKLGEHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80866 # 2a2fX.596.227 read from T0547.t04.many.frag # found chain 2a2fX in template set T0547 596 :LYLFLNDNG 2a2fX 228 :LKSTFDSFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80867 # 1u8xX.596.452 read from T0547.t04.many.frag # found chain 1u8xX in template set T0547 596 :LYLFLNDNG 1u8xX 430 :LVEANKDFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=80868 # 1cqmA.596.25 read from T0547.t04.many.frag # found chain 1cqmA in training set Warning: unaligning (T0547)N603 (1cqmA)Y33 because G (3-10) conformation "forbidden" or filtered. T0547 596 :LYLFLND 1cqmA 26 :IQRALEN T0547 604 :G 1cqmA 34 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=80870 # 1v6sA.596.299 read from T0547.t04.many.frag # found chain 1v6sA in training set Warning: unaligning (T0547)N603 (1v6sA)A307 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLND 1v6sA 300 :FARALEG T0547 604 :G 1v6sA 308 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=80872 # 1ak0.596.175 read from T0547.t04.many.frag # found chain 1ak0 in training set Warning: unaligning (T0547)N603 (1ak0)G183 because Y (epsilon') conformation "forbidden" or filtered. T0547 596 :LYLFLND 1ak0 176 :LVQNIES T0547 604 :G 1ak0 184 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=80874 # 1y9lA.597.80 read from T0547.t04.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)N603 (1y9lA)G114 because S (epsilon) conformation "forbidden" or filtered. T0547 597 :YLFLND 1y9lA 108 :FSMLKD T0547 604 :GY 1y9lA 115 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=80876 # 1a73A.597.15 read from T0547.t04.many.frag # found chain 1a73A in training set T0547 597 :YLFLNDNGY 1a73A 16 :EETVGQFPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80877 # 2f5tX.597.122 read from T0547.t04.many.frag # found chain 2f5tX in training set T0547 597 :YLFLNDNGY 2f5tX 232 :IEIFKESTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80878 # 1j5uA.597.76 read from T0547.t04.many.frag # found chain 1j5uA in template set T0547 597 :YLFLNDNGY 1j5uA 71 :ILEISKGWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80879 # 1qcsA.597.125 read from T0547.t04.many.frag # found chain 1qcsA in template set Warning: unaligning (T0547)D602 (1qcsA)N127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1qcsA)A129 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLN 1qcsA 122 :IQQFN T0547 603 :N 1qcsA 128 :Q T0547 605 :Y 1qcsA 130 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=80882 # 1otjA.597.225 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 597 :YLFLNDNGY 1otjA 226 :FAHITKPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80883 # 1v4pA.597.62 read from T0547.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0547)N603 (1v4pA)N69 because L (left) conformation "forbidden" or filtered. T0547 597 :YLFLND 1v4pA 63 :NEKVKE T0547 604 :GY 1v4pA 70 :AP Number of specific fragments extracted= 2 number of extra gaps= 1 total=80885 # 1t95A.597.223 read from T0547.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)N601 (1t95A)K228 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D602 (1t95A)G229 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1t95A)A231 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFL 1t95A 224 :GKVA T0547 603 :N 1t95A 230 :E T0547 605 :Y 1t95A 232 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=80888 # 1k8qA.597.335 read from T0547.t04.many.frag # found chain 1k8qA in template set T0547 597 :YLFLNDNGY 1k8qA 336 :LSKLPNLIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80889 # 1aquA.597.282 read from T0547.t04.many.frag # found chain 1aquA in training set T0547 597 :YLFLNDNGY 1aquA 281 :KQQMKDCTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80890 # 1ylqA.597.60 read from T0547.t04.many.frag # found chain 1ylqA in template set T0547 597 :YLFLNDNGY 1ylqA 58 :TKKFFDSPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80891 # 1olzA.597.312 read from T0547.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)G604 (1olzA)K320 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1olzA 313 :EEVFSHG T0547 605 :Y 1olzA 321 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=80893 # 1ftrA.597.186 read from T0547.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)G604 (1ftrA)E194 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1ftrA 187 :VDAIKGV T0547 605 :Y 1ftrA 195 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=80895 # 1g9gA.597.441 read from T0547.t04.many.frag # found chain 1g9gA in template set Warning: unaligning (T0547)G604 (1g9gA)I449 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1g9gA 442 :AKWINGE T0547 605 :Y 1g9gA 450 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=80897 # 1ds1A.597.251 read from T0547.t04.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)G604 (1ds1A)T259 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1ds1A 252 :SKALDEV T0547 605 :Y 1ds1A 260 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=80899 # 2dpmA.597.226 read from T0547.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)N603 (2dpmA)G233 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (2dpmA)A234 because E (beta_S) conformation "forbidden" or filtered. T0547 597 :YLFLND 2dpmA 227 :KRLSDT T0547 605 :Y 2dpmA 235 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=80901 # 1eyqA.597.135 read from T0547.t04.many.frag # found chain 1eyqA in template set T0547 597 :YLFLNDNGY 1eyqA 136 :AEAFKPVNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80902 # 1g4mA.597.104 read from T0547.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0547)G604 (1g4mA)A112 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1g4mA 105 :IKKLGEH T0547 605 :Y 1g4mA 113 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=80904 # 1uvjA.597.594 read from T0547.t04.many.frag # found chain 1uvjA in template set T0547 597 :YLFLNDNGY 1uvjA 595 :TLELSRYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=80905 # 1ursA.597.219 read from T0547.t04.many.frag # found chain 1ursA in training set T0547 597 :YLFLNDNGY 1ursA 220 :RDMVSKYHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=80906 # 1vkpA.597.339 read from T0547.t04.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)N603 (1vkpA)H346 because E (beta_S) conformation "forbidden" or filtered. T0547 597 :YLFLND 1vkpA 340 :SDTFPH T0547 604 :GY 1vkpA 347 :SV Number of specific fragments extracted= 2 number of extra gaps= 1 total=80908 # 1oruA.597.153 read from T0547.t04.many.frag # found chain 1oruA in training set Warning: unaligning (T0547)D602 (1oruA)G156 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1oruA)R158 because G (3-10) conformation "forbidden" or filtered. T0547 597 :YLFLN 1oruA 151 :VRHAL T0547 603 :N 1oruA 157 :I T0547 605 :Y 1oruA 159 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=80911 # 1d0qA.597.19 read from T0547.t04.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)G604 (1d0qA)V27 because E (beta_S) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1d0qA 20 :VDVIGEY T0547 605 :Y 1d0qA 28 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=80913 # 1l3kA.597.121 read from T0547.t04.many.frag # found chain 1l3kA in training set T0547 597 :YLFLNDNGY 1l3kA 122 :RDYFEQYGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80914 # 1zx1A.597.208 read from T0547.t04.many.frag # found chain 1zx1A in template set T0547 597 :YLFLNDNGY 1zx1A 208 :SQRLQTIWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80915 # 1qysA.597.67 read from T0547.t04.many.frag # found chain 1qysA in template set T0547 597 :YLFLNDNGY 1qysA 68 :IKVFAELGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=80916 # 2d0oA.597.568 read from T0547.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0547)N603 (2d0oA)Y575 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLND 2d0oA 569 :TDALAH T0547 604 :GY 2d0oA 576 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=80918 # 3cla.597.204 read from T0547.t04.many.frag # found chain 3cla in training set Warning: unaligning (T0547)Y605 because last residue in template chain is (3cla)K219 T0547 597 :YLFLNDNG 3cla 211 :QELCNSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80919 # 1tfe.597.122 read from T0547.t04.many.frag # found chain 1tfe in training set Warning: unaligning (T0547)N601 (1tfe)G181 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1tfe)I184 because E (beta_S) conformation "forbidden" or filtered. T0547 597 :YLFL 1tfe 177 :IAKI T0547 602 :DN 1tfe 182 :EN T0547 605 :Y 1tfe 185 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=80922 # 2a2fX.597.228 read from T0547.t04.many.frag # found chain 2a2fX in template set T0547 597 :YLFLNDNGY 2a2fX 229 :KSTFDSFAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80923 # 2f5tX.598.123 read from T0547.t04.many.frag # found chain 2f5tX in training set Warning: unaligning (T0547)N603 (2f5tX)S238 because E (beta_S) conformation "forbidden" or filtered. T0547 598 :LFLND 2f5tX 233 :EIFKE T0547 604 :GYL 2f5tX 239 :TLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=80925 # 1olzA.598.313 read from T0547.t04.many.frag # found chain 1olzA in template set T0547 598 :LFLNDNGYL 1olzA 314 :EVFSHGKYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=80926 # 1a73A.598.16 read from T0547.t04.many.frag # found chain 1a73A in training set Warning: unaligning (T0547)G604 (1a73A)P23 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1a73A 17 :ETVGQF T0547 605 :YL 1a73A 24 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=80928 # 1y9lA.598.81 read from T0547.t04.many.frag # found chain 1y9lA in training set T0547 598 :LFLNDNGYL 1y9lA 109 :SMLKDGVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=80929 # 1qcsA.598.126 read from T0547.t04.many.frag # found chain 1qcsA in template set Warning: unaligning (T0547)D602 (1qcsA)N127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1qcsA)A129 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLN 1qcsA 123 :QQFN T0547 603 :N 1qcsA 128 :Q T0547 605 :YL 1qcsA 130 :FS Number of specific fragments extracted= 3 number of extra gaps= 2 total=80932 # 1j5uA.598.77 read from T0547.t04.many.frag # found chain 1j5uA in template set Warning: unaligning (T0547)G604 (1j5uA)W78 because E (beta_S) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1j5uA 72 :LEISKG T0547 605 :YL 1j5uA 79 :AP Number of specific fragments extracted= 2 number of extra gaps= 1 total=80934 # 1t95A.598.224 read from T0547.t04.many.frag # found chain 1t95A in template set T0547 598 :LFLNDNGYL 1t95A 225 :KVAKGEALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=80935 # 1v4pA.598.63 read from T0547.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0547)N603 (1v4pA)N69 because L (left) conformation "forbidden" or filtered. T0547 598 :LFLND 1v4pA 64 :EKVKE T0547 604 :GYL 1v4pA 70 :API Number of specific fragments extracted= 2 number of extra gaps= 1 total=80937 # 1k8qA.598.336 read from T0547.t04.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)N603 (1k8qA)L342 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1k8qA)I343 because G (3-10) conformation "forbidden" or filtered. T0547 598 :LFLND 1k8qA 337 :SKLPN T0547 605 :YL 1k8qA 344 :YH Number of specific fragments extracted= 2 number of extra gaps= 1 total=80939 # 1otjA.598.226 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 598 :LFLNDNGYL 1otjA 227 :AHITKPEFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=80940 # 1ursA.598.220 read from T0547.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)L606 (1ursA)M229 because Y (epsilon') conformation "forbidden" or filtered. T0547 598 :LFLNDNGY 1ursA 221 :DMVSKYHW Number of specific fragments extracted= 1 number of extra gaps= 1 total=80941 # 1g4mA.598.105 read from T0547.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0547)G604 (1g4mA)A112 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1g4mA 106 :KKLGEH T0547 605 :YL 1g4mA 113 :YP Number of specific fragments extracted= 2 number of extra gaps= 1 total=80943 # 1g9gA.598.442 read from T0547.t04.many.frag # found chain 1g9gA in template set T0547 598 :LFLNDNGYL 1g9gA 443 :KWINGEIKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=80944 # 1ylqA.598.61 read from T0547.t04.many.frag # found chain 1ylqA in template set T0547 598 :LFLNDNGYL 1ylqA 59 :KKFFDSPFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=80945 # 1oruA.598.154 read from T0547.t04.many.frag # found chain 1oruA in training set Warning: unaligning (T0547)D602 (1oruA)G156 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1oruA)R158 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1oruA)G159 because S (epsilon) conformation "forbidden" or filtered. T0547 598 :LFLN 1oruA 152 :RHAL T0547 603 :N 1oruA 157 :I T0547 606 :L 1oruA 160 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=80948 # 1ltzA.598.179 read from T0547.t04.many.frag # found chain 1ltzA in training set Warning: unaligning (T0547)N603 (1ltzA)F185 because G (3-10) conformation "forbidden" or filtered. T0547 598 :LFLND 1ltzA 180 :WYTVE T0547 604 :GYL 1ltzA 186 :GLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=80950 # 2dpmA.598.227 read from T0547.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)N603 (2dpmA)G233 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (2dpmA)A234 because E (beta_S) conformation "forbidden" or filtered. T0547 598 :LFLND 2dpmA 228 :RLSDT T0547 605 :YL 2dpmA 235 :YV Number of specific fragments extracted= 2 number of extra gaps= 1 total=80952 # 1jalA.598.169 read from T0547.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)N603 (1jalA)A175 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1jalA)G176 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLND 1jalA 170 :PVLEN T0547 605 :YL 1jalA 177 :MI Number of specific fragments extracted= 2 number of extra gaps= 1 total=80954 # 1d0qA.598.20 read from T0547.t04.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)G604 (1d0qA)V27 because E (beta_S) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1d0qA 21 :DVIGEY T0547 605 :YL 1d0qA 28 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=80956 # 1eyqA.598.136 read from T0547.t04.many.frag # found chain 1eyqA in template set Warning: unaligning (T0547)N603 (1eyqA)V142 because E (beta_S) conformation "forbidden" or filtered. T0547 598 :LFLND 1eyqA 137 :EAFKP T0547 604 :GYL 1eyqA 143 :NFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=80958 # 1ds1A.598.252 read from T0547.t04.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)G604 (1ds1A)T259 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1ds1A 253 :KALDEV T0547 605 :YL 1ds1A 260 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=80960 # 1aquA.598.283 read from T0547.t04.many.frag # found chain 1aquA in training set Warning: unaligning (T0547)N603 (1aquA)C287 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLND 1aquA 282 :QQMKD T0547 604 :GYL 1aquA 288 :TVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=80962 # 1ftrA.598.264 read from T0547.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)G604 (1ftrA)P271 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1ftrA 265 :EAACQQ T0547 605 :YL 1ftrA 272 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=80964 # 1rjdA.598.315 read from T0547.t04.many.frag # found chain 1rjdA in training set Warning: unaligning (T0547)N603 (1rjdA)Y321 because E (beta_S) conformation "forbidden" or filtered. T0547 598 :LFLND 1rjdA 316 :VMQTH T0547 604 :GYL 1rjdA 322 :ILM Number of specific fragments extracted= 2 number of extra gaps= 1 total=80966 # 1bxyA.598.47 read from T0547.t04.many.frag # found chain 1bxyA in template set Warning: unaligning (T0547)N601 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bxyA)H52 Warning: unaligning (T0547)D602 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bxyA)H52 T0547 598 :LFL 1bxyA 48 :EKV T0547 603 :NGYL 1bxyA 53 :LVRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=80968 # 1l3kA.598.122 read from T0547.t04.many.frag # found chain 1l3kA in training set T0547 598 :LFLNDNGYL 1l3kA 123 :DYFEQYGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=80969 # 1vkpA.598.340 read from T0547.t04.many.frag # found chain 1vkpA in training set T0547 598 :LFLNDNGYL 1vkpA 341 :DTFPHHSVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80970 # 1zkoA.598.41 read from T0547.t04.many.frag # found chain 1zkoA in training set Warning: unaligning (T0547)N601 (1zkoA)G33 because S (epsilon) conformation "forbidden" or filtered. T0547 598 :LFL 1zkoA 30 :EQL T0547 602 :DNGYL 1zkoA 34 :DVVYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=80972 # 1ftrA.598.187 read from T0547.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)G604 (1ftrA)E194 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1ftrA)G195 because T (delta_L) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1ftrA 188 :DAIKGV T0547 606 :L 1ftrA 196 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=80974 # 1j54A.598.87 read from T0547.t04.many.frag # found chain 1j54A in template set T0547 598 :LFLNDNGYL 1j54A 88 :DYIRGAELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=80975 # 1olzA.599.314 read from T0547.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)N603 (1olzA)G319 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLND 1olzA 315 :VFSH T0547 604 :GYLK 1olzA 320 :KYMQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=80977 # 1y9lA.599.82 read from T0547.t04.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)N603 (1y9lA)G114 because S (epsilon) conformation "forbidden" or filtered. T0547 599 :FLND 1y9lA 110 :MLKD T0547 604 :GYLK 1y9lA 115 :VVLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=80979 # 1t95A.599.225 read from T0547.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)N603 (1t95A)E230 because G (3-10) conformation "forbidden" or filtered. T0547 599 :FLND 1t95A 226 :VAKG T0547 604 :GYLK 1t95A 231 :ALTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=80981 # 1ltzA.599.180 read from T0547.t04.many.frag # found chain 1ltzA in training set T0547 599 :FLNDNGYLK 1ltzA 181 :YTVEFGLIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=80982 # 2f5tX.599.124 read from T0547.t04.many.frag # found chain 2f5tX in training set Warning: unaligning (T0547)G604 (2f5tX)T239 because E (beta_S) conformation "forbidden" or filtered. T0547 599 :FLNDN 2f5tX 234 :IFKES T0547 605 :YLK 2f5tX 240 :LEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=80984 # 1qcsA.599.127 read from T0547.t04.many.frag # found chain 1qcsA in template set Warning: unaligning (T0547)D602 (1qcsA)N127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1qcsA)A129 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLN 1qcsA 124 :QFN T0547 603 :N 1qcsA 128 :Q T0547 605 :YLK 1qcsA 130 :FSV Number of specific fragments extracted= 3 number of extra gaps= 2 total=80987 # 1j5uA.599.78 read from T0547.t04.many.frag # found chain 1j5uA in template set Warning: unaligning (T0547)N603 (1j5uA)G77 because T (delta_L) conformation "forbidden" or filtered. T0547 599 :FLND 1j5uA 73 :EISK T0547 604 :GYLK 1j5uA 78 :WAPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=80989 # 1d0qA.599.21 read from T0547.t04.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)G604 (1d0qA)V27 because E (beta_S) conformation "forbidden" or filtered. T0547 599 :FLNDN 1d0qA 22 :VIGEY T0547 605 :YLK 1d0qA 28 :QLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=80991 # 1bxyA.599.48 read from T0547.t04.many.frag # found chain 1bxyA in template set Warning: unaligning (T0547)N601 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bxyA)H52 Warning: unaligning (T0547)D602 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bxyA)H52 Warning: unaligning (T0547)G604 (1bxyA)V54 because E (beta_S) conformation "forbidden" or filtered. T0547 599 :FL 1bxyA 49 :KV T0547 603 :N 1bxyA 53 :L T0547 605 :YLK 1bxyA 55 :RVE Number of specific fragments extracted= 3 number of extra gaps= 2 total=80994 # 1k8qA.599.337 read from T0547.t04.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)D602 (1k8qA)N341 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1k8qA)I343 because G (3-10) conformation "forbidden" or filtered. T0547 599 :FLN 1k8qA 338 :KLP T0547 603 :N 1k8qA 342 :L T0547 605 :YLK 1k8qA 344 :YHR Number of specific fragments extracted= 3 number of extra gaps= 2 total=80997 # 1jalA.599.170 read from T0547.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)N603 (1jalA)A175 because L (left) conformation "forbidden" or filtered. T0547 599 :FLND 1jalA 171 :VLEN T0547 604 :GYLK 1jalA 176 :GMIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=80999 # 1g4mA.599.106 read from T0547.t04.many.frag # found chain 1g4mA in template set T0547 599 :FLNDNGYLK 1g4mA 107 :KLGEHAYPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=81000 # 1ursA.599.221 read from T0547.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)L606 (1ursA)M229 because Y (epsilon') conformation "forbidden" or filtered. T0547 599 :FLNDNGY 1ursA 222 :MVSKYHW T0547 607 :K 1ursA 230 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=81002 # 1g9gA.599.443 read from T0547.t04.many.frag # found chain 1g9gA in template set T0547 599 :FLNDNGYLK 1g9gA 444 :WINGEIKFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=81003 # 1rjdA.599.316 read from T0547.t04.many.frag # found chain 1rjdA in training set T0547 599 :FLNDNGYLK 1rjdA 317 :MQTHYILMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=81004 # 1a73A.599.17 read from T0547.t04.many.frag # found chain 1a73A in training set Warning: unaligning (T0547)G604 (1a73A)P23 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLNDN 1a73A 18 :TVGQF T0547 605 :YLK 1a73A 24 :VIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=81006 # 1v4pA.599.64 read from T0547.t04.many.frag # found chain 1v4pA in training set T0547 599 :FLNDNGYLK 1v4pA 65 :KVKENAPIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=81007 # 1oruA.599.155 read from T0547.t04.many.frag # found chain 1oruA in training set Warning: unaligning (T0547)N601 (1oruA)L155 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D602 (1oruA)G156 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1oruA)G159 because S (epsilon) conformation "forbidden" or filtered. T0547 599 :FL 1oruA 153 :HA T0547 603 :NG 1oruA 157 :IR T0547 606 :LK 1oruA 160 :IV Number of specific fragments extracted= 3 number of extra gaps= 2 total=81010 # 2dpmA.599.228 read from T0547.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)N603 (2dpmA)G233 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (2dpmA)M237 because E (beta_S) conformation "forbidden" or filtered. T0547 599 :FLND 2dpmA 229 :LSDT T0547 604 :GYL 2dpmA 234 :AYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=81012 # 1ds1A.599.253 read from T0547.t04.many.frag # found chain 1ds1A in training set T0547 599 :FLNDNGYLK 1ds1A 254 :ALDEVTEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81013 # 1m1nA.599.343 read from T0547.t04.many.frag # found chain 1m1nA in training set T0547 599 :FLNDNGYLK 1m1nA 345 :RLEGKRVML Number of specific fragments extracted= 1 number of extra gaps= 0 total=81014 # 1l3kA.599.123 read from T0547.t04.many.frag # found chain 1l3kA in training set T0547 599 :FLNDNGYLK 1l3kA 124 :YFEQYGKIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=81015 # 1svb.599.266 read from T0547.t04.many.frag # found chain 1svb in template set Warning: unaligning (T0547)N601 (1svb)A269 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FL 1svb 267 :AL T0547 602 :DNGYLK 1svb 270 :GVPVAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=81017 2b2aA expands to /projects/compbio/data/pdb/2b2a.pdb.gz 2b2aA:# 2b2aA.599.158 read from T0547.t04.many.frag # adding 2b2aA to template set # found chain 2b2aA in template set Warning: unaligning (T0547)G604 (2b2aA)L156 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLNDN 2b2aA 151 :FLIDF T0547 605 :YLK 2b2aA 157 :VFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=81019 # 1otjA.599.227 read from T0547.t04.many.frag # found chain 1otjA in template set T0547 599 :FLNDNGYLK 1otjA 228 :HITKPEFQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81020 # 1ftrA.599.265 read from T0547.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)N603 (1ftrA)Q270 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLND 1ftrA 266 :AACQ T0547 604 :GYLK 1ftrA 271 :PGVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81022 # 1xpkC.599.366 read from T0547.t04.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)N603 (1xpkC)I371 because Y (epsilon') conformation "forbidden" or filtered. T0547 599 :FLND 1xpkC 367 :EDRH T0547 604 :GYLK 1xpkC 372 :FYLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=81024 # 1j54A.599.88 read from T0547.t04.many.frag # found chain 1j54A in template set Warning: unaligning (T0547)N601 (1j54A)R91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1j54A)E94 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FL 1j54A 89 :YI T0547 602 :DN 1j54A 92 :GA T0547 605 :YLK 1j54A 95 :LVI Number of specific fragments extracted= 3 number of extra gaps= 2 total=81027 # 1iq4A.599.59 read from T0547.t04.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)N601 (1iq4A)G62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1iq4A)P65 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1iq4A)T68 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FL 1iq4A 60 :IA T0547 602 :DN 1iq4A 63 :QR T0547 605 :YL 1iq4A 66 :VV Number of specific fragments extracted= 3 number of extra gaps= 3 total=81030 # 1um0A.599.235 read from T0547.t04.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)N603 (1um0A)L240 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1um0A)N241 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1um0A)G242 because T (delta_L) conformation "forbidden" or filtered. T0547 599 :FLND 1um0A 236 :AMMG T0547 606 :LK 1um0A 243 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=81032 # 1olzA.600.315 read from T0547.t04.many.frag # found chain 1olzA in template set T0547 600 :LNDNGYLKS 1olzA 316 :FSHGKYMQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=81033 # 1y9lA.600.83 read from T0547.t04.many.frag # found chain 1y9lA in training set T0547 600 :LNDNGYLKS 1y9lA 111 :LKDGVVLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=81034 # 1ltzA.600.181 read from T0547.t04.many.frag # found chain 1ltzA in training set Warning: unaligning (T0547)K607 (1ltzA)N189 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LNDNGYL 1ltzA 182 :TVEFGLI T0547 608 :S 1ltzA 190 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=81036 # 1bxyA.600.49 read from T0547.t04.many.frag # found chain 1bxyA in template set Warning: unaligning (T0547)N601 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bxyA)H52 Warning: unaligning (T0547)D602 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bxyA)H52 T0547 600 :L 1bxyA 50 :V T0547 603 :NGYLKS 1bxyA 53 :LVRVEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81038 # 1t95A.600.226 read from T0547.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)G604 (1t95A)A231 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LNDN 1t95A 227 :AKGE T0547 605 :YLKS 1t95A 232 :LTKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81040 # 1d0qA.600.22 read from T0547.t04.many.frag # found chain 1d0qA in training set T0547 600 :LNDNGYLKS 1d0qA 23 :IGEYVQLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=81041 # 1xpkC.600.367 read from T0547.t04.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)N603 (1xpkC)I371 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1xpkC)F372 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1xpkC)N376 because Y (epsilon') conformation "forbidden" or filtered. T0547 600 :LND 1xpkC 368 :DRH T0547 605 :YLK 1xpkC 373 :YLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=81043 # 1jalA.600.171 read from T0547.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)G604 (1jalA)G176 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LNDN 1jalA 172 :LENA T0547 605 :YLKS 1jalA 177 :MIRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=81045 # 1l3kA.600.124 read from T0547.t04.many.frag # found chain 1l3kA in training set Warning: unaligning (T0547)G604 (1l3kA)G129 because Y (epsilon') conformation "forbidden" or filtered. T0547 600 :LNDN 1l3kA 125 :FEQY T0547 605 :YLKS 1l3kA 130 :KIEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81047 # 1g4mA.600.107 read from T0547.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0547)G604 (1g4mA)A112 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LNDN 1g4mA 108 :LGEH T0547 605 :YLKS 1g4mA 113 :YPFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=81049 # 1ftrA.600.266 read from T0547.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)Y605 (1ftrA)G272 because T (delta_L) conformation "forbidden" or filtered. T0547 600 :LNDNG 1ftrA 267 :ACQQP T0547 606 :LKS 1ftrA 273 :VVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=81051 # 2f5tX.600.125 read from T0547.t04.many.frag # found chain 2f5tX in training set T0547 600 :LNDNGYLKS 2f5tX 235 :FKESTLEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=81052 # 1j5uA.600.79 read from T0547.t04.many.frag # found chain 1j5uA in template set Warning: unaligning (T0547)N603 (1j5uA)G77 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1j5uA)W78 because E (beta_S) conformation "forbidden" or filtered. T0547 600 :LND 1j5uA 74 :ISK T0547 605 :YLKS 1j5uA 79 :APWR Number of specific fragments extracted= 2 number of extra gaps= 1 total=81054 # 1ursA.600.222 read from T0547.t04.many.frag # found chain 1ursA in training set T0547 600 :LNDNGYLKS 1ursA 223 :VSKYHWMTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=81055 # 1k8qA.600.338 read from T0547.t04.many.frag # found chain 1k8qA in template set T0547 600 :LNDNGYLKS 1k8qA 339 :LPNLIYHRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=81056 # 2f1fA.600.138 read from T0547.t04.many.frag # found chain 2f1fA in training set T0547 600 :LNDNGYLKS 2f1fA 138 :IRDVAKIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=81057 # 2b2aA.600.159 read from T0547.t04.many.frag # found chain 2b2aA in template set Warning: unaligning (T0547)K607 (2b2aA)T159 because E (beta_S) conformation "forbidden" or filtered. T0547 600 :LNDNGYL 2b2aA 152 :LIDFLVF T0547 608 :S 2b2aA 160 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=81059 # 1rjdA.600.317 read from T0547.t04.many.frag # found chain 1rjdA in training set T0547 600 :LNDNGYLKS 1rjdA 318 :QTHYILMKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=81060 # 2dpmA.600.229 read from T0547.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)N603 (2dpmA)G233 because T (delta_L) conformation "forbidden" or filtered. T0547 600 :LND 2dpmA 230 :SDT T0547 604 :GYLKS 2dpmA 234 :AYVML Number of specific fragments extracted= 2 number of extra gaps= 1 total=81062 # 1um0A.600.236 read from T0547.t04.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)Y605 (1um0A)G242 because T (delta_L) conformation "forbidden" or filtered. T0547 600 :LNDNG 1um0A 237 :MMGLN T0547 606 :LKS 1um0A 243 :VKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=81064 # 1qcsA.600.128 read from T0547.t04.many.frag # found chain 1qcsA in template set Warning: unaligning (T0547)N601 (1qcsA)N126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D602 (1qcsA)N127 because L (left) conformation "forbidden" or filtered. T0547 600 :L 1qcsA 125 :F T0547 603 :NGYLKS 1qcsA 128 :QAFSVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=81066 # 1v4pA.600.65 read from T0547.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0547)G604 (1v4pA)A70 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LNDN 1v4pA 66 :VKEN T0547 605 :YLKS 1v4pA 71 :PIKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=81068 # 1musA.600.331 read from T0547.t04.many.frag # found chain 1musA in template set T0547 600 :LNDNGYLKS 1musA 332 :WKTGAGAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=81069 # 1oruA.600.156 read from T0547.t04.many.frag # found chain 1oruA in training set Warning: unaligning (T0547)D602 (1oruA)G156 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1oruA)R158 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1oruA)V161 because E (beta_S) conformation "forbidden" or filtered. T0547 600 :LN 1oruA 154 :AL T0547 603 :N 1oruA 157 :I T0547 605 :YL 1oruA 159 :GI T0547 608 :S 1oruA 162 :C Number of specific fragments extracted= 4 number of extra gaps= 3 total=81073 # 1g9gA.600.444 read from T0547.t04.many.frag # found chain 1g9gA in template set Warning: unaligning (T0547)G604 (1g9gA)I449 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LNDN 1g9gA 445 :INGE T0547 605 :YLKS 1g9gA 450 :KFNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=81075 # 1tfe.600.125 read from T0547.t04.many.frag # found chain 1tfe in training set Warning: unaligning (T0547)N601 (1tfe)G181 because T (delta_L) conformation "forbidden" or filtered. T0547 600 :L 1tfe 180 :I T0547 602 :DNGYLKS 1tfe 182 :ENIVVRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=81077 # 1svb.600.267 read from T0547.t04.many.frag # found chain 1svb in template set Warning: unaligning (T0547)N601 (1svb)A269 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L606 (1svb)A274 because Y (epsilon') conformation "forbidden" or filtered. T0547 600 :L 1svb 268 :L T0547 602 :DNGY 1svb 270 :GVPV T0547 607 :KS 1svb 275 :HI Number of specific fragments extracted= 3 number of extra gaps= 2 total=81080 # 1otjA.600.228 read from T0547.t04.many.frag # found chain 1otjA in template set Warning: unaligning (T0547)D602 (1otjA)K231 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LN 1otjA 229 :IT T0547 603 :NGYLKS 1otjA 232 :PEFQVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=81082 # 1iq4A.600.60 read from T0547.t04.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)D602 (1iq4A)Q63 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1iq4A)P65 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1iq4A)T68 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LN 1iq4A 61 :AG T0547 603 :N 1iq4A 64 :R T0547 605 :YL 1iq4A 66 :VV T0547 608 :S 1iq4A 69 :R Number of specific fragments extracted= 4 number of extra gaps= 3 total=81086 # 1m1nA.600.344 read from T0547.t04.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)D602 (1m1nA)G348 because T (delta_L) conformation "forbidden" or filtered. T0547 600 :LN 1m1nA 346 :LE T0547 603 :NGYLKS 1m1nA 349 :KRVMLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=81088 # 1olzA.601.316 read from T0547.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)N603 (1olzA)G319 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :ND 1olzA 317 :SH T0547 604 :GYLKSI 1olzA 320 :KYMQST Number of specific fragments extracted= 2 number of extra gaps= 1 total=81090 # 1ltzA.601.182 read from T0547.t04.many.frag # found chain 1ltzA in training set T0547 601 :NDNGYLKSI 1ltzA 183 :VEFGLINTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=81091 # 1xpkC.601.368 read from T0547.t04.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)N603 (1xpkC)I371 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1xpkC)F372 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :ND 1xpkC 369 :RH T0547 605 :YLKSI 1xpkC 373 :YLSNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=81093 # 1bxyA.601.50 read from T0547.t04.many.frag # found chain 1bxyA in template set Warning: unaligning (T0547)N601 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bxyA)H52 Warning: unaligning (T0547)D602 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bxyA)H52 Warning: unaligning (T0547)I609 (1bxyA)V59 because Y (epsilon') conformation "forbidden" or filtered. T0547 603 :NGYLKS 1bxyA 53 :LVRVEV Number of specific fragments extracted= 1 number of extra gaps= 2 total=81094 # 1y9lA.601.84 read from T0547.t04.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)S608 (1y9lA)G119 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I609 (1y9lA)N120 because Y (epsilon') conformation "forbidden" or filtered. T0547 601 :NDNGYLK 1y9lA 112 :KDGVVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=81095 # 1um0A.601.237 read from T0547.t04.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)Y605 (1um0A)G242 because T (delta_L) conformation "forbidden" or filtered. T0547 601 :NDNG 1um0A 238 :MGLN T0547 606 :LKSI 1um0A 243 :VKAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81097 # 1jalA.601.172 read from T0547.t04.many.frag # found chain 1jalA in template set T0547 601 :NDNGYLKSI 1jalA 173 :ENAGMIRSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81098 # 1t95A.601.227 read from T0547.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)N601 (1t95A)K228 because L (left) conformation "forbidden" or filtered. T0547 602 :DNGYLKSI 1t95A 229 :GEALTKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=81099 # 1l3kA.601.125 read from T0547.t04.many.frag # found chain 1l3kA in training set T0547 601 :NDNGYLKSI 1l3kA 126 :EQYGKIEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=81100 # 1d0qA.601.23 read from T0547.t04.many.frag # found chain 1d0qA in training set T0547 601 :NDNGYLKSI 1d0qA 24 :GEYVQLKRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=81101 # 1g4mA.601.108 read from T0547.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0547)N603 (1g4mA)H111 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1g4mA)A112 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :ND 1g4mA 109 :GE T0547 605 :YLKSI 1g4mA 113 :YPFTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=81103 # 1jalA.601.277 read from T0547.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)N601 (1jalA)N278 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 because of BadResidue code BAD_PEPTIDE in next template residue (1jalA)Y282 Warning: unaligning (T0547)Y605 because of BadResidue code BAD_PEPTIDE at template residue (1jalA)Y282 Warning: unaligning (T0547)L606 because of BadResidue code BAD_PEPTIDE in next template residue (1jalA)T284 Warning: unaligning (T0547)K607 because of BadResidue code BAD_PEPTIDE at template residue (1jalA)T284 T0547 602 :DN 1jalA 279 :LQ T0547 608 :SI 1jalA 285 :AG Number of specific fragments extracted= 2 number of extra gaps= 2 total=81105 # 2f5tX.601.126 read from T0547.t04.many.frag # found chain 2f5tX in training set T0547 601 :NDNGYLKSI 2f5tX 236 :KESTLEKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=81106 # 2dpmA.601.230 read from T0547.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)N603 (2dpmA)G233 because T (delta_L) conformation "forbidden" or filtered. T0547 601 :ND 2dpmA 231 :DT T0547 604 :GYLKSI 2dpmA 234 :AYVMLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=81108 # 1ftrA.601.267 read from T0547.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)N603 (1ftrA)Q270 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1ftrA)P271 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :ND 1ftrA 268 :CQ T0547 605 :YLKSI 1ftrA 272 :GVVKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=81110 # 1rjdA.601.318 read from T0547.t04.many.frag # found chain 1rjdA in training set T0547 601 :NDNGYLKSI 1rjdA 319 :THYILMKAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=81111 # 1lc5A.601.284 read from T0547.t04.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)G604 (1lc5A)P288 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1lc5A)L289 because T (delta_L) conformation "forbidden" or filtered. T0547 601 :NDN 1lc5A 285 :CQL T0547 606 :LKSI 1lc5A 290 :LTVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=81113 # 2b2aA.601.160 read from T0547.t04.many.frag # found chain 2b2aA in template set T0547 601 :NDNGYLKSI 2b2aA 153 :IDFLVFTKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81114 # 1ursA.601.223 read from T0547.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)L606 (1ursA)M229 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1ursA)T230 because E (beta_S) conformation "forbidden" or filtered. T0547 601 :NDNGY 1ursA 224 :SKYHW T0547 608 :SI 1ursA 231 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=81116 # 2f1fA.601.139 read from T0547.t04.many.frag # found chain 2f1fA in training set T0547 601 :NDNGYLKSI 2f1fA 139 :RDVAKIVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81117 # 1musA.601.332 read from T0547.t04.many.frag # found chain 1musA in template set Warning: unaligning (T0547)S608 (1musA)R340 because G (3-10) conformation "forbidden" or filtered. T0547 601 :NDNGYLK 1musA 333 :KTGAGAE T0547 609 :I 1musA 341 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=81119 2cc3A expands to /projects/compbio/data/pdb/2cc3.pdb.gz 2cc3A:# 2cc3A.601.65 read from T0547.t04.many.frag # adding 2cc3A to template set # found chain 2cc3A in template set Warning: unaligning (T0547)G604 (2cc3A)G156 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (2cc3A)E159 because E (beta_S) conformation "forbidden" or filtered. T0547 601 :NDN 2cc3A 153 :GKH T0547 605 :YL 2cc3A 157 :RL T0547 608 :SI 2cc3A 160 :VE Number of specific fragments extracted= 3 number of extra gaps= 2 total=81122 # 1u5xA.601.129 read from T0547.t04.many.frag # found chain 1u5xA in training set Warning: unaligning (T0547)G604 (1u5xA)T234 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1u5xA)G237 because Y (epsilon') conformation "forbidden" or filtered. T0547 601 :NDN 1u5xA 231 :PHG T0547 605 :YL 1u5xA 235 :FL T0547 608 :SI 1u5xA 238 :FV Number of specific fragments extracted= 3 number of extra gaps= 2 total=81125 2fb0A expands to /projects/compbio/data/pdb/2fb0.pdb.gz 2fb0A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 29, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 31, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 33, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 35, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 37, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 39, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 41, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 43, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 200, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 202, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 204, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 206, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 208, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 210, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 212, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 214, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 216, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 237, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 239, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 241, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 243, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 245, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 247, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 249, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 251, because occupancy 0.500 <= existing 0.500 in 2fb0A Skipped atom 253, because occupancy 0.500 <= existing 0.500 in 2fb0A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2fb0A.601.81 read from T0547.t04.many.frag # adding 2fb0A to template set # found chain 2fb0A in template set T0547 601 :NDNGYLKSI 2fb0A 79 :QELAEMKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=81126 # 1zavA.601.49 read from T0547.t04.many.frag # found chain 1zavA in template set Warning: unaligning (T0547)N601 (1zavA)G49 because S (epsilon) conformation "forbidden" or filtered. T0547 602 :DNGYLKSI 1zavA 50 :DGARFRVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=81127 # 1k8qA.601.339 read from T0547.t04.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)G604 (1k8qA)I343 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1k8qA)R346 because E (beta_S) conformation "forbidden" or filtered. T0547 601 :NDN 1k8qA 340 :PNL T0547 605 :YL 1k8qA 344 :YH T0547 608 :SI 1k8qA 347 :KI Number of specific fragments extracted= 3 number of extra gaps= 2 total=81130 # 1j5uA.601.80 read from T0547.t04.many.frag # found chain 1j5uA in template set T0547 601 :NDNGYLKSI 1j5uA 75 :SKGWAPWRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=81131 # 2f69A.601.107 read from T0547.t04.many.frag # found chain 2f69A in training set Warning: unaligning (T0547)G604 (2f69A)V216 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (2f69A)A219 because Y (epsilon') conformation "forbidden" or filtered. T0547 601 :NDN 2f69A 213 :SER T0547 605 :YL 2f69A 217 :YV T0547 608 :SI 2f69A 220 :ES Number of specific fragments extracted= 3 number of extra gaps= 2 total=81134 # 1svb.601.268 read from T0547.t04.many.frag # found chain 1svb in template set Warning: unaligning (T0547)N601 (1svb)A269 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D602 (1svb)G270 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L606 (1svb)A274 because Y (epsilon') conformation "forbidden" or filtered. T0547 603 :NGY 1svb 271 :VPV T0547 607 :KSI 1svb 275 :HIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=81136 # 1h16A.601.750 read from T0547.t04.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)I609 because last residue in template chain is (1h16A)M759 T0547 601 :NDNGYLKS 1h16A 751 :ITRTFTQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=81137 # 1olzA.602.317 read from T0547.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)G604 (1olzA)K320 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1olzA)Q323 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1olzA)T326 because S (epsilon) conformation "forbidden" or filtered. T0547 602 :DN 1olzA 318 :HG T0547 605 :YL 1olzA 321 :YM T0547 608 :SI 1olzA 324 :ST Number of specific fragments extracted= 3 number of extra gaps= 3 total=81140 # 1xpkC.602.369 read from T0547.t04.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)N603 (1xpkC)I371 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1xpkC)F372 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :D 1xpkC 370 :H T0547 605 :YLKSIG 1xpkC 373 :YLSNIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=81142 # 1ltzA.602.183 read from T0547.t04.many.frag # found chain 1ltzA in training set T0547 602 :DNGYLKSIG 1ltzA 184 :EFGLINTPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=81143 # 1y9lA.602.85 read from T0547.t04.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)G610 (1y9lA)K121 because G (3-10) conformation "forbidden" or filtered. T0547 602 :DNGYLKSI 1y9lA 113 :DGVVLKGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=81144 # 1bxyA.602.51 read from T0547.t04.many.frag # found chain 1bxyA in template set Warning: unaligning (T0547)D602 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bxyA)H52 Warning: unaligning (T0547)G604 (1bxyA)V54 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 because last residue in template chain is (1bxyA)E60 T0547 603 :N 1bxyA 53 :L T0547 605 :YLKSI 1bxyA 55 :RVEVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=81146 # 1um0A.602.238 read from T0547.t04.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)G604 (1um0A)N241 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1um0A)E247 because E (beta_S) conformation "forbidden" or filtered. T0547 602 :DN 1um0A 239 :GL T0547 605 :YLKSI 1um0A 242 :GVKAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=81148 # 1jalA.602.173 read from T0547.t04.many.frag # found chain 1jalA in template set T0547 602 :DNGYLKSIG 1jalA 174 :NAGMIRSVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=81149 # 1jalA.602.278 read from T0547.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)D602 (1jalA)L279 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 because of BadResidue code BAD_PEPTIDE in next template residue (1jalA)Y282 Warning: unaligning (T0547)Y605 because of BadResidue code BAD_PEPTIDE at template residue (1jalA)Y282 Warning: unaligning (T0547)L606 because of BadResidue code BAD_PEPTIDE in next template residue (1jalA)T284 Warning: unaligning (T0547)K607 because of BadResidue code BAD_PEPTIDE at template residue (1jalA)T284 T0547 603 :N 1jalA 280 :Q T0547 608 :SIG 1jalA 285 :AGV Number of specific fragments extracted= 2 number of extra gaps= 2 total=81151 # 1t95A.602.228 read from T0547.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)D602 (1t95A)G229 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1t95A)A231 because P (beta_P) conformation "forbidden" or filtered. T0547 603 :N 1t95A 230 :E T0547 605 :YLKSIG 1t95A 232 :LTKVLR Number of specific fragments extracted= 2 number of extra gaps= 2 total=81153 # 1g4mA.602.109 read from T0547.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0547)G604 (1g4mA)A112 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :DN 1g4mA 110 :EH T0547 605 :YLKSIG 1g4mA 113 :YPFTFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=81155 # 1l3kA.602.126 read from T0547.t04.many.frag # found chain 1l3kA in training set T0547 602 :DNGYLKSIG 1l3kA 127 :QYGKIEVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=81156 # 2f69A.602.108 read from T0547.t04.many.frag # found chain 2f69A in training set Warning: unaligning (T0547)G604 (2f69A)V216 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (2f69A)A219 because Y (epsilon') conformation "forbidden" or filtered. T0547 602 :DN 2f69A 214 :ER T0547 605 :YL 2f69A 217 :YV T0547 608 :SIG 2f69A 220 :ESL Number of specific fragments extracted= 3 number of extra gaps= 2 total=81159 # 1d0qA.602.24 read from T0547.t04.many.frag # found chain 1d0qA in training set T0547 602 :DNGYLKSIG 1d0qA 25 :EYVQLKRQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=81160 # 1zavA.602.50 read from T0547.t04.many.frag # found chain 1zavA in template set T0547 602 :DNGYLKSIG 1zavA 50 :DGARFRVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=81161 # 2b2aA.602.161 read from T0547.t04.many.frag # found chain 2b2aA in template set Warning: unaligning (T0547)G604 (2b2aA)L156 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :DN 2b2aA 154 :DF T0547 605 :YLKSIG 2b2aA 157 :VFTKVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=81163 # 2dpmA.602.231 read from T0547.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)N603 (2dpmA)G233 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (2dpmA)N240 because Y (epsilon') conformation "forbidden" or filtered. T0547 602 :D 2dpmA 232 :T T0547 604 :GYLKSI 2dpmA 234 :AYVMLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=81165 # 2f1fA.602.140 read from T0547.t04.many.frag # found chain 2f1fA in training set Warning: unaligning (T0547)G604 (2f1fA)A142 because Y (epsilon') conformation "forbidden" or filtered. T0547 602 :DN 2f1fA 140 :DV T0547 605 :YLKSIG 2f1fA 143 :KIVEVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=81167 # 1lc5A.602.285 read from T0547.t04.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)G604 (1lc5A)P288 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1lc5A)P294 because N (gamma') conformation "forbidden" or filtered. T0547 602 :DN 1lc5A 286 :QL T0547 605 :YLKSI 1lc5A 289 :LLTVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=81169 # 1musA.602.333 read from T0547.t04.many.frag # found chain 1musA in template set Warning: unaligning (T0547)Y605 (1musA)G337 because T (delta_L) conformation "forbidden" or filtered. T0547 602 :DNG 1musA 334 :TGA T0547 606 :LKSIG 1musA 338 :AERQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=81171 # 2fb0A.602.82 read from T0547.t04.many.frag # found chain 2fb0A in template set Warning: unaligning (T0547)G604 (2fb0A)A82 because Y (epsilon') conformation "forbidden" or filtered. T0547 602 :DN 2fb0A 80 :EL T0547 605 :YLKSIG 2fb0A 83 :EMKLEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=81173 # 1tfe.602.127 read from T0547.t04.many.frag # found chain 1tfe in training set Warning: unaligning (T0547)S608 (1tfe)R188 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I609 (1tfe)F189 because Y (epsilon') conformation "forbidden" or filtered. T0547 602 :DNGYLK 1tfe 182 :ENIVVR T0547 610 :G 1tfe 190 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=81175 # 1u5xA.602.130 read from T0547.t04.many.frag # found chain 1u5xA in training set T0547 602 :DNGYLKSIG 1u5xA 232 :HGTFLGFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=81176 # 2f5tX.602.127 read from T0547.t04.many.frag # found chain 2f5tX in training set T0547 602 :DNGYLKSIG 2f5tX 237 :ESTLEKEII Number of specific fragments extracted= 1 number of extra gaps= 0 total=81177 # 1gxmA.602.248 read from T0547.t04.many.frag # found chain 1gxmA in training set Warning: unaligning (T0547)S608 (1gxmA)G572 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1gxmA)T574 because E (beta_S) conformation "forbidden" or filtered. T0547 602 :DNGYLK 1gxmA 566 :PRTYLE T0547 609 :I 1gxmA 573 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=81179 # 1od3A.602.113 read from T0547.t04.many.frag # found chain 1od3A in training set Warning: unaligning (T0547)N603 (1od3A)G98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1od3A)G102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1od3A)Y105 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :D 1od3A 97 :S T0547 604 :GYL 1od3A 99 :TLL T0547 608 :SI 1od3A 103 :TI Number of specific fragments extracted= 3 number of extra gaps= 3 total=81182 # 1ursA.602.224 read from T0547.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)L606 (1ursA)M229 because Y (epsilon') conformation "forbidden" or filtered. T0547 602 :DNGY 1ursA 225 :KYHW T0547 607 :KSIG 1ursA 230 :TPST Number of specific fragments extracted= 2 number of extra gaps= 1 total=81184 # 1yk3A.602.183 read from T0547.t04.many.frag # found chain 1yk3A in template set Warning: unaligning (T0547)N603 (1yk3A)C185 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1yk3A)G189 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1yk3A)D192 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :D 1yk3A 184 :G T0547 604 :GYL 1yk3A 186 :KFL T0547 608 :SI 1yk3A 190 :EH Number of specific fragments extracted= 3 number of extra gaps= 3 total=81187 # 1ftrA.602.268 read from T0547.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)N603 (1ftrA)Q270 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1ftrA)P271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1ftrA)S277 because Y (epsilon') conformation "forbidden" or filtered. T0547 602 :D 1ftrA 269 :Q T0547 605 :YLKSI 1ftrA 272 :GVVKI Number of specific fragments extracted= 2 number of extra gaps= 2 total=81189 # 1rjdA.602.319 read from T0547.t04.many.frag # found chain 1rjdA in training set T0547 602 :DNGYLKSIG 1rjdA 320 :HYILMKAQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=81190 # 2cc3A.602.66 read from T0547.t04.many.frag # found chain 2cc3A in template set T0547 602 :DNGYLKSIG 2cc3A 154 :KHGRLEVEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=81191 # 1olzA.603.318 read from T0547.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)G610 (1olzA)T326 because S (epsilon) conformation "forbidden" or filtered. T0547 603 :NGYLKSI 1olzA 319 :GKYMQST T0547 611 :V 1olzA 327 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=81193 # 1ltzA.603.184 read from T0547.t04.many.frag # found chain 1ltzA in training set Warning: unaligning (T0547)V611 (1ltzA)G193 because S (epsilon) conformation "forbidden" or filtered. T0547 603 :NGYLKSIG 1ltzA 185 :FGLINTPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=81194 # 1y9lA.603.86 read from T0547.t04.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)N603 (1y9lA)G114 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1y9lA)V115 because E (beta_S) conformation "forbidden" or filtered. T0547 605 :YLKSIGV 1y9lA 116 :VLKGNKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=81195 # 1xpkC.603.370 read from T0547.t04.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)N603 (1xpkC)I371 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1xpkC)F372 because P (beta_P) conformation "forbidden" or filtered. T0547 605 :YLKSIGV 1xpkC 373 :YLSNIEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=81196 # 1jalA.603.174 read from T0547.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)G604 (1jalA)G176 because P (beta_P) conformation "forbidden" or filtered. T0547 603 :N 1jalA 175 :A T0547 605 :YLKSIGV 1jalA 177 :MIRSVGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=81198 # 1jalA.603.279 read from T0547.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)G604 because of BadResidue code BAD_PEPTIDE in next template residue (1jalA)Y282 Warning: unaligning (T0547)Y605 because of BadResidue code BAD_PEPTIDE at template residue (1jalA)Y282 Warning: unaligning (T0547)L606 because of BadResidue code BAD_PEPTIDE in next template residue (1jalA)T284 Warning: unaligning (T0547)K607 because of BadResidue code BAD_PEPTIDE at template residue (1jalA)T284 T0547 603 :N 1jalA 280 :Q T0547 608 :SIGV 1jalA 285 :AGVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=81200 # 1g4mA.603.110 read from T0547.t04.many.frag # found chain 1g4mA in template set T0547 603 :NGYLKSIGV 1g4mA 111 :HAYPFTFEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=81201 # 2f69A.603.109 read from T0547.t04.many.frag # found chain 2f69A in training set Warning: unaligning (T0547)K607 (2f69A)A219 because Y (epsilon') conformation "forbidden" or filtered. T0547 603 :NGYL 2f69A 215 :RVYV T0547 608 :SIGV 2f69A 220 :ESLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=81203 # 1t95A.603.229 read from T0547.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)G604 (1t95A)A231 because P (beta_P) conformation "forbidden" or filtered. T0547 603 :N 1t95A 230 :E T0547 605 :YLKSIGV 1t95A 232 :LTKVLRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=81205 # 1l3kA.603.127 read from T0547.t04.many.frag # found chain 1l3kA in training set Warning: unaligning (T0547)G604 (1l3kA)G129 because Y (epsilon') conformation "forbidden" or filtered. T0547 603 :N 1l3kA 128 :Y T0547 605 :YLKSIGV 1l3kA 130 :KIEVIEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=81207 # 1um0A.603.239 read from T0547.t04.many.frag # found chain 1um0A in template set Warning: unaligning (T0547)N603 (1um0A)L240 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1um0A)N241 because P (beta_P) conformation "forbidden" or filtered. T0547 605 :YLKSIGV 1um0A 242 :GVKAVEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=81208 # 1musA.603.334 read from T0547.t04.many.frag # found chain 1musA in template set T0547 603 :NGYLKSIGV 1musA 335 :GAGAERQRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=81209 # 1lc5A.603.286 read from T0547.t04.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)N603 (1lc5A)L287 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1lc5A)P288 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1lc5A)T291 because E (beta_S) conformation "forbidden" or filtered. T0547 605 :YL 1lc5A 289 :LL T0547 608 :SIGV 1lc5A 292 :VYPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=81211 # 2b2aA.603.162 read from T0547.t04.many.frag # found chain 2b2aA in template set T0547 603 :NGYLKSIGV 2b2aA 155 :FLVFTKVEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=81212 # 2f1fA.603.141 read from T0547.t04.many.frag # found chain 2f1fA in training set T0547 603 :NGYLKSIGV 2f1fA 141 :VAKIVEVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=81213 # 1zavA.603.51 read from T0547.t04.many.frag # found chain 1zavA in template set T0547 603 :NGYLKSIGV 1zavA 51 :GARFRVVKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=81214 # 1od3A.603.114 read from T0547.t04.many.frag # found chain 1od3A in training set T0547 603 :NGYLKSIGV 1od3A 98 :GTLLGTIYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81215 # 1yk3A.603.184 read from T0547.t04.many.frag # found chain 1yk3A in template set Warning: unaligning (T0547)G604 (1yk3A)K186 because P (beta_P) conformation "forbidden" or filtered. T0547 603 :N 1yk3A 185 :C T0547 605 :YLKSIGV 1yk3A 187 :FLGEHDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=81217 # 1gxmA.603.249 read from T0547.t04.many.frag # found chain 1gxmA in training set Warning: unaligning (T0547)G610 (1gxmA)T574 because E (beta_S) conformation "forbidden" or filtered. T0547 603 :NGYLKSI 1gxmA 567 :RTYLEGY T0547 611 :V 1gxmA 575 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=81219 # 1d0qA.603.25 read from T0547.t04.many.frag # found chain 1d0qA in training set T0547 603 :NGYLKSIGV 1d0qA 26 :YVQLKRQGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=81220 # 2fb0A.603.83 read from T0547.t04.many.frag # found chain 2fb0A in template set T0547 603 :NGYLKSIGV 2fb0A 81 :LAEMKLEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=81221 # 1tfe.603.128 read from T0547.t04.many.frag # found chain 1tfe in training set Warning: unaligning (T0547)G604 (1tfe)I184 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1tfe)C190 because E (beta_S) conformation "forbidden" or filtered. T0547 603 :N 1tfe 183 :N T0547 605 :YLKSI 1tfe 185 :VVRRF T0547 611 :V 1tfe 191 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=81224 # 1u5xA.603.131 read from T0547.t04.many.frag # found chain 1u5xA in training set Warning: unaligning (T0547)K607 (1u5xA)G237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1u5xA)K240 because P (beta_P) conformation "forbidden" or filtered. T0547 603 :NGYL 1u5xA 233 :GTFL T0547 608 :SI 1u5xA 238 :FV Number of specific fragments extracted= 2 number of extra gaps= 2 total=81226 # 2a5yB.603.440 read from T0547.t04.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)N603 (2a5yB)G441 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (2a5yB)S445 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (2a5yB)G446 because Y (epsilon') conformation "forbidden" or filtered. T0547 604 :GYL 2a5yB 442 :ALL T0547 609 :IGV 2a5yB 447 :KRM Number of specific fragments extracted= 2 number of extra gaps= 2 total=81228 # 2ae0X.603.232 read from T0547.t04.many.frag # found chain 2ae0X in template set T0547 603 :NGYLKSIGV 2ae0X 233 :FVFFKPQSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=81229 # 1c8nA.603.128 read from T0547.t04.many.frag # found chain 1c8nA in template set Warning: unaligning (T0547)L606 (1c8nA)W132 because Y (epsilon') conformation "forbidden" or filtered. T0547 603 :NGY 1c8nA 129 :YSK T0547 607 :KSIGV 1c8nA 133 :RWVSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=81231 1syxB expands to /projects/compbio/data/pdb/1syx.pdb.gz 1syxB:# 1syxB.603.60 read from T0547.t04.many.frag # adding 1syxB to template set # found chain 1syxB in template set Warning: unaligning (T0547)N603 (1syxB)G61 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1syxB)R65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V611 (1syxB)P69 because C (cis) conformation "forbidden" or filtered. T0547 604 :GYL 1syxB 62 :VYC T0547 608 :SIG 1syxB 66 :KLD Number of specific fragments extracted= 2 number of extra gaps= 3 total=81233 # 1v4pA.603.68 read from T0547.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0547)G604 (1v4pA)A70 because P (beta_P) conformation "forbidden" or filtered. T0547 603 :N 1v4pA 69 :N T0547 605 :YLKSIGV 1v4pA 71 :PIKIYEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=81235 # 1zr6A.603.285 read from T0547.t04.many.frag # found chain 1zr6A in training set Warning: unaligning (T0547)N603 (1zr6A)K280 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1zr6A)V287 because E (beta_S) conformation "forbidden" or filtered. T0547 604 :GYLKSI 1zr6A 281 :STISKL T0547 611 :V 1zr6A 288 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=81237 # 1otjA.603.231 read from T0547.t04.many.frag # found chain 1otjA in template set Warning: unaligning (T0547)K607 (1otjA)V236 because E (beta_S) conformation "forbidden" or filtered. T0547 603 :NGYL 1otjA 232 :PEFQ T0547 608 :SIGV 1otjA 237 :RWRW Number of specific fragments extracted= 2 number of extra gaps= 1 total=81239 # command:# Reading fragments from alignment file # Attempting to read fragment alignments from file T0547.t06.many.frag with CODEWEIGHT bystroff filtering # adding to alignment library never # T0547 read from T0547.t06.many.frag # 1jr2A.1.43 read from T0547.t06.many.frag # found chain 1jr2A in template set T0547 1 :MMDYGIDIW 1jr2A 23 :LGLYGLEAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=81240 # 1u9yA.1.16 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 1 :MMDYGIDIW 1u9yA 17 :AKLLNTKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=81241 # 1vd6A.1.30 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 1 :MMDYGIDIW 1vd6A 31 :ALEAGLDGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81242 # 1xi1A.1.16 read from T0547.t06.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)G5 (1xi1A)D21 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1xi1A)R23 because Y (epsilon') conformation "forbidden" or filtered. T0547 1 :MMDY 1xi1A 17 :TKVE T0547 6 :I 1xi1A 22 :C T0547 8 :IW 1xi1A 24 :VW Number of specific fragments extracted= 3 number of extra gaps= 2 total=81245 # 1dqgA.1.33 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G5 (1dqgA)K38 because P (beta_P) conformation "forbidden" or filtered. T0547 1 :MMDY 1dqgA 34 :AESQ T0547 6 :IDIW 1dqgA 39 :FRWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81247 # 1fjrA.1.135 read from T0547.t06.many.frag # found chain 1fjrA in template set Warning: unaligning (T0547)G5 (1fjrA)K140 because P (beta_P) conformation "forbidden" or filtered. T0547 1 :MMDY 1fjrA 136 :EEQD T0547 6 :IDIW 1fjrA 141 :YTLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=81249 # 1zpvA.1.25 read from T0547.t06.many.frag # found chain 1zpvA in template set Warning: unaligning (T0547)D7 (1zpvA)N29 because P (beta_P) conformation "forbidden" or filtered. T0547 1 :MMDYGI 1zpvA 23 :IAELGL T0547 8 :IW 1zpvA 30 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=81251 # 1wu7A.1.33 read from T0547.t06.many.frag # found chain 1wu7A in template set T0547 1 :MMDYGIDIW 1wu7A 34 :AEAFGFRRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=81252 1vqoS expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoS:# 1vqoS.1.42 read from T0547.t06.many.frag # adding 1vqoS to template set # found chain 1vqoS in template set T0547 1 :MMDYGIDIW 1vqoS 42 :EEQYDVTVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=81253 # 1knmA.1.38 read from T0547.t06.many.frag # found chain 1knmA in training set T0547 1 :MMDYGIDIW 1knmA 39 :GTNQQWAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=81254 # 1fcdA.1.64 read from T0547.t06.many.frag # found chain 1fcdA in template set T0547 1 :MMDYGIDIW 1fcdA 65 :LRAHGIQVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81255 # 1vpqA.1.44 read from T0547.t06.many.frag # found chain 1vpqA in template set T0547 1 :MMDYGIDIW 1vpqA 33 :WAVLGFRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81256 # 2aebA.1.39 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)Q43 Warning: unaligning (T0547)Y4 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)Q43 Warning: unaligning (T0547)G5 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E44 Warning: unaligning (T0547)I6 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)C45 T0547 1 :MM 2aebA 40 :LK T0547 7 :DIW 2aebA 46 :DVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=81258 # 1ddwA.1.61 read from T0547.t06.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)G5 (1ddwA)T66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1ddwA)T68 because E (beta_S) conformation "forbidden" or filtered. T0547 1 :MMDY 1ddwA 62 :TPNM T0547 6 :I 1ddwA 67 :F T0547 8 :IW 1ddwA 69 :KT Number of specific fragments extracted= 3 number of extra gaps= 2 total=81261 # 1dqgA.1.75 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G5 (1dqgA)K80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1dqgA)E82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 T0547 1 :MMDY 1dqgA 76 :SEYQ T0547 6 :I 1dqgA 81 :W T0547 8 :I 1dqgA 83 :C Number of specific fragments extracted= 3 number of extra gaps= 3 total=81264 # 1rzhH.1.182 read from T0547.t06.many.frag # found chain 1rzhH in training set Warning: unaligning (T0547)Y4 (1rzhH)G186 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G5 (1rzhH)S187 because P (beta_P) conformation "forbidden" or filtered. T0547 1 :MMD 1rzhH 183 :LKD T0547 6 :IDIW 1rzhH 188 :TRLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=81266 # 1tfzA.1.55 read from T0547.t06.many.frag # found chain 1tfzA in training set Warning: unaligning (T0547)M1 (1tfzA)D56 because Y (epsilon') conformation "forbidden" or filtered. T0547 2 :MDYGIDIW 1tfzA 57 :LSTGNMVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=81267 # 1wcwA.1.25 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 1 :MMDYGIDIW 1wcwA 26 :AEKLGFTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=81268 # 1n35A.1.300 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)M2 (1n35A)P302 because C (cis) conformation "forbidden" or filtered. T0547 1 :M 1n35A 301 :E T0547 3 :DYGIDIW 1n35A 303 :RSDYKFM Number of specific fragments extracted= 2 number of extra gaps= 1 total=81270 # 1p1jA.1.138 read from T0547.t06.many.frag # found chain 1p1jA in training set Warning: unaligning (T0547)I8 (1p1jA)G146 because Y (epsilon') conformation "forbidden" or filtered. T0547 1 :MMDYGID 1p1jA 139 :PNDFVVS T0547 9 :W 1p1jA 147 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=81272 # 2basA.1.32 read from T0547.t06.many.frag # found chain 2basA in template set T0547 1 :MMDYGIDIW 2basA 9 :TNIDDVLPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=81273 # 1j54A.1.22 read from T0547.t06.many.frag # found chain 1j54A in template set T0547 1 :MMDYGIDIW 1j54A 23 :AHYEGHKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=81274 # 1w0hA.1.25 read from T0547.t06.many.frag # found chain 1w0hA in training set T0547 1 :MMDYGIDIW 1w0hA 144 :PPEFVHEII Number of specific fragments extracted= 1 number of extra gaps= 0 total=81275 # 1pp7U.1.51 read from T0547.t06.many.frag # found chain 1pp7U in template set Warning: unaligning (T0547)W9 (1pp7U)I60 because G (3-10) conformation "forbidden" or filtered. T0547 1 :MMDYGIDI 1pp7U 52 :EEEIGLSW Number of specific fragments extracted= 1 number of extra gaps= 1 total=81276 # 1evlA.1.43 read from T0547.t06.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)D7 (1evlA)Q291 because P (beta_P) conformation "forbidden" or filtered. T0547 1 :MMDYGI 1evlA 285 :LKEYQY T0547 8 :IW 1evlA 292 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81278 # 1oxxK.1.78 read from T0547.t06.many.frag # found chain 1oxxK in training set T0547 1 :MMDYGIDIW 1oxxK 79 :PEDRKIGMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81279 # 1eswA.1.35 read from T0547.t06.many.frag # found chain 1eswA in template set T0547 1 :MMDYGIDIW 1eswA 36 :LKEAGGRYW Number of specific fragments extracted= 1 number of extra gaps= 0 total=81280 # 1qftA.1.86 read from T0547.t06.many.frag # found chain 1qftA in training set T0547 1 :MMDYGIDIW 1qftA 87 :VKMYGYNRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=81281 # 1qmgA.1.13 read from T0547.t06.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)Y4 (1qmgA)F88 because Y (epsilon') conformation "forbidden" or filtered. T0547 1 :MMD 1qmgA 85 :TFD T0547 5 :GIDIW 1qmgA 89 :DSSVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=81283 # 1knmA.1.78 read from T0547.t06.many.frag # found chain 1knmA in training set T0547 1 :MMDYGIDIW 1knmA 79 :GDNQKWRLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=81284 # 1vd6A.2.31 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 2 :MDYGIDIWG 1vd6A 32 :LEAGLDGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=81285 # 1xi1A.2.17 read from T0547.t06.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)Y4 (1xi1A)E20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G5 (1xi1A)D21 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1xi1A)R23 because Y (epsilon') conformation "forbidden" or filtered. T0547 2 :MD 1xi1A 18 :KV T0547 6 :I 1xi1A 22 :C T0547 8 :IWG 1xi1A 24 :VWA Number of specific fragments extracted= 3 number of extra gaps= 2 total=81288 # 1u9yA.2.17 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 2 :MDYGIDIWG 1u9yA 18 :KLLNTKLTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=81289 # 1jr2A.2.44 read from T0547.t06.many.frag # found chain 1jr2A in template set T0547 2 :MDYGIDIWG 1jr2A 24 :GLYGLEATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=81290 # 1dqgA.2.34 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G5 (1dqgA)K38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1dqgA)V42 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1dqgA)S43 because Y (epsilon') conformation "forbidden" or filtered. T0547 2 :MDY 1dqgA 35 :ESQ T0547 6 :IDI 1dqgA 39 :FRW Number of specific fragments extracted= 2 number of extra gaps= 2 total=81292 # 1zpvA.2.26 read from T0547.t06.many.frag # found chain 1zpvA in template set Warning: unaligning (T0547)G10 (1zpvA)D32 because Y (epsilon') conformation "forbidden" or filtered. T0547 2 :MDYGIDIW 1zpvA 24 :AELGLNID Number of specific fragments extracted= 1 number of extra gaps= 1 total=81293 # 1wu7A.2.34 read from T0547.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)D7 (1wu7A)R40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1wu7A)D43 because Y (epsilon') conformation "forbidden" or filtered. T0547 2 :MDYGI 1wu7A 35 :EAFGF T0547 8 :IW 1wu7A 41 :RI Number of specific fragments extracted= 2 number of extra gaps= 2 total=81295 # 1fjrA.2.136 read from T0547.t06.many.frag # found chain 1fjrA in template set Warning: unaligning (T0547)G5 (1fjrA)K140 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1fjrA)T142 because E (beta_S) conformation "forbidden" or filtered. T0547 2 :MDY 1fjrA 137 :EQD T0547 6 :I 1fjrA 141 :Y T0547 8 :IWG 1fjrA 143 :LFE Number of specific fragments extracted= 3 number of extra gaps= 2 total=81298 # 1vqoS.2.43 read from T0547.t06.many.frag # found chain 1vqoS in template set Warning: unaligning (T0547)D7 (1vqoS)T48 because E (beta_S) conformation "forbidden" or filtered. T0547 2 :MDYGI 1vqoS 43 :EQYDV T0547 8 :IWG 1vqoS 49 :VEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=81300 # 1knmA.2.39 read from T0547.t06.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)Y4 (1knmA)Q42 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G5 (1knmA)Q43 because P (beta_P) conformation "forbidden" or filtered. T0547 2 :MD 1knmA 40 :TN T0547 6 :IDIWG 1knmA 44 :WAATD Number of specific fragments extracted= 2 number of extra gaps= 1 total=81302 # 1rzhH.2.183 read from T0547.t06.many.frag # found chain 1rzhH in training set Warning: unaligning (T0547)G10 (1rzhH)P192 because P (beta_P) conformation "forbidden" or filtered. T0547 2 :MDYGIDIW 1rzhH 184 :KDGSTRLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=81303 # 1ddwA.2.62 read from T0547.t06.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)G5 (1ddwA)T66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1ddwA)S71 because Y (epsilon') conformation "forbidden" or filtered. T0547 2 :MDY 1ddwA 63 :PNM T0547 6 :IDIW 1ddwA 67 :FTKT Number of specific fragments extracted= 2 number of extra gaps= 2 total=81305 # 2aebA.2.40 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)Q43 Warning: unaligning (T0547)Y4 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)Q43 Warning: unaligning (T0547)G5 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E44 Warning: unaligning (T0547)I6 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)C45 Warning: unaligning (T0547)G10 (2aebA)D49 because P (beta_P) conformation "forbidden" or filtered. T0547 2 :M 2aebA 41 :K T0547 7 :DIW 2aebA 46 :DVK Number of specific fragments extracted= 2 number of extra gaps= 2 total=81307 # 1tfzA.2.56 read from T0547.t06.many.frag # found chain 1tfzA in training set T0547 2 :MDYGIDIWG 1tfzA 57 :LSTGNMVHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=81308 # 1vpqA.2.45 read from T0547.t06.many.frag # found chain 1vpqA in template set Warning: unaligning (T0547)G10 (1vpqA)E42 because E (beta_S) conformation "forbidden" or filtered. T0547 2 :MDYGIDIW 1vpqA 34 :AVLGFRIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=81309 # 1wcwA.2.26 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 2 :MDYGIDIWG 1wcwA 27 :EKLGFTPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=81310 # 1fcdA.2.65 read from T0547.t06.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)Y4 (1fcdA)H68 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1fcdA)Q71 because P (beta_P) conformation "forbidden" or filtered. T0547 2 :MD 1fcdA 66 :RA T0547 5 :GI 1fcdA 69 :GI T0547 8 :IWG 1fcdA 72 :VVH Number of specific fragments extracted= 3 number of extra gaps= 2 total=81313 # 1usyA.2.66 read from T0547.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)D3 (1usyA)D68 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G5 (1usyA)Q70 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1usyA)V73 Warning: unaligning (T0547)I8 because of BadResidue code BAD_PEPTIDE at template residue (1usyA)V73 T0547 2 :M 1usyA 67 :P T0547 4 :Y 1usyA 69 :S T0547 6 :I 1usyA 71 :I T0547 9 :WG 1usyA 74 :WY Number of specific fragments extracted= 4 number of extra gaps= 3 total=81317 # 1qmgA.2.14 read from T0547.t06.many.frag # found chain 1qmgA in training set T0547 2 :MDYGIDIWG 1qmgA 86 :FDFDSSVFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=81318 # 1dqgA.2.76 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 T0547 2 :MDYGIDI 1dqgA 77 :EYQKWEC Number of specific fragments extracted= 1 number of extra gaps= 1 total=81319 # 1n35A.2.301 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)M2 (1n35A)P302 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)I6 (1n35A)Y306 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1n35A)Y310 because P (beta_P) conformation "forbidden" or filtered. T0547 3 :DYG 1n35A 303 :RSD T0547 7 :DIW 1n35A 307 :KFM Number of specific fragments extracted= 2 number of extra gaps= 3 total=81321 # 1w0hA.2.26 read from T0547.t06.many.frag # found chain 1w0hA in training set Warning: unaligning (T0547)G10 (1w0hA)E153 because E (beta_S) conformation "forbidden" or filtered. T0547 2 :MDYGIDIW 1w0hA 145 :PEFVHEII Number of specific fragments extracted= 1 number of extra gaps= 1 total=81322 # 1p1jA.2.139 read from T0547.t06.many.frag # found chain 1p1jA in training set Warning: unaligning (T0547)I8 (1p1jA)G146 because Y (epsilon') conformation "forbidden" or filtered. T0547 2 :MDYGID 1p1jA 140 :NDFVVS T0547 9 :WG 1p1jA 147 :WD Number of specific fragments extracted= 2 number of extra gaps= 1 total=81324 # 1j54A.2.23 read from T0547.t06.many.frag # found chain 1j54A in template set T0547 2 :MDYGIDIWG 1j54A 24 :HYEGHKIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=81325 # 1pp7U.2.52 read from T0547.t06.many.frag # found chain 1pp7U in template set T0547 2 :MDYGIDIWG 1pp7U 53 :EEIGLSWIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=81326 # 1zz1A.2.88 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)D7 (1zz1A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 2 :MDYGI 1zz1A 89 :NLPTG T0547 8 :IWG 1zz1A 95 :DTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=81328 # 1evlA.2.44 read from T0547.t06.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)Y4 (1evlA)Y288 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1evlA)V293 because Y (epsilon') conformation "forbidden" or filtered. T0547 2 :MD 1evlA 286 :KE T0547 5 :GIDI 1evlA 289 :QYQE T0547 10 :G 1evlA 294 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=81331 # 1knmA.2.79 read from T0547.t06.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)G5 (1knmA)K83 because E (beta_S) conformation "forbidden" or filtered. T0547 2 :MDY 1knmA 80 :DNQ T0547 6 :IDIWG 1knmA 84 :WRLNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=81333 # 1b65A.2.12 read from T0547.t06.many.frag # found chain 1b65A in template set Warning: unaligning (T0547)I8 because of BadResidue code BAD_PEPTIDE in next template residue (1b65A)T20 Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE at template residue (1b65A)T20 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1b65A)G21 T0547 2 :MDYGID 1b65A 13 :RDLGLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=81334 # 1pg4A.2.60 read from T0547.t06.many.frag # found chain 1pg4A in training set Warning: unaligning (T0547)Y4 (1pg4A)G63 because L (left) conformation "forbidden" or filtered. T0547 2 :MD 1pg4A 61 :AP T0547 5 :GIDIWG 1pg4A 64 :NVSIKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=81336 # 1xi1A.3.18 read from T0547.t06.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)Y4 (1xi1A)E20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1xi1A)R23 because Y (epsilon') conformation "forbidden" or filtered. T0547 3 :D 1xi1A 19 :V T0547 5 :GI 1xi1A 21 :DC T0547 8 :IWGN 1xi1A 24 :VWAY Number of specific fragments extracted= 3 number of extra gaps= 2 total=81339 # 1vd6A.3.32 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 3 :DYGIDIWGN 1vd6A 33 :EAGLDGVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=81340 # 1u9yA.3.18 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)D7 (1u9yA)K23 because P (beta_P) conformation "forbidden" or filtered. T0547 3 :DYGI 1u9yA 19 :LLNT T0547 8 :IWGN 1u9yA 24 :LTRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81342 # 1dqgA.3.35 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G10 (1dqgA)S43 because Y (epsilon') conformation "forbidden" or filtered. T0547 3 :DYGIDIW 1dqgA 36 :SQKFRWV T0547 11 :N 1dqgA 44 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=81344 # 1zpvA.3.27 read from T0547.t06.many.frag # found chain 1zpvA in template set Warning: unaligning (T0547)D7 (1zpvA)N29 because P (beta_P) conformation "forbidden" or filtered. T0547 3 :DYGI 1zpvA 25 :ELGL T0547 8 :IWGN 1zpvA 30 :IDDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=81346 # 1jr2A.3.45 read from T0547.t06.many.frag # found chain 1jr2A in template set T0547 3 :DYGIDIWGN 1jr2A 25 :LYGLEATLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=81347 # 1rzhH.3.184 read from T0547.t06.many.frag # found chain 1rzhH in training set Warning: unaligning (T0547)D7 (1rzhH)R189 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1rzhH)P192 because P (beta_P) conformation "forbidden" or filtered. T0547 3 :DYGI 1rzhH 185 :DGST T0547 8 :IW 1rzhH 190 :LL T0547 11 :N 1rzhH 193 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=81350 # 1wu7A.3.35 read from T0547.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G10 (1wu7A)D43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1wu7A)F44 because Y (epsilon') conformation "forbidden" or filtered. T0547 3 :DYGIDIW 1wu7A 36 :AFGFRRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=81351 # 1vqoS.3.44 read from T0547.t06.many.frag # found chain 1vqoS in template set Warning: unaligning (T0547)Y4 (1vqoS)Y45 because G (3-10) conformation "forbidden" or filtered. T0547 3 :D 1vqoS 44 :Q T0547 5 :GIDIWGN 1vqoS 46 :DVTVEQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81353 # 1fjrA.3.137 read from T0547.t06.many.frag # found chain 1fjrA in template set Warning: unaligning (T0547)G5 (1fjrA)K140 because P (beta_P) conformation "forbidden" or filtered. T0547 3 :DY 1fjrA 138 :QD T0547 6 :IDIWGN 1fjrA 141 :YTLFEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=81355 # 1ddwA.3.63 read from T0547.t06.many.frag # found chain 1ddwA in training set T0547 3 :DYGIDIWGN 1ddwA 64 :NMTFTKTSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=81356 # 1qmgA.3.15 read from T0547.t06.many.frag # found chain 1qmgA in training set T0547 3 :DYGIDIWGN 1qmgA 87 :DFDSSVFKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=81357 # 1knmA.3.40 read from T0547.t06.many.frag # found chain 1knmA in training set T0547 3 :DYGIDIWGN 1knmA 41 :NQQWAATDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=81358 # 1tfzA.3.57 read from T0547.t06.many.frag # found chain 1tfzA in training set Warning: unaligning (T0547)G10 (1tfzA)A65 because E (beta_S) conformation "forbidden" or filtered. T0547 3 :DYGIDIW 1tfzA 58 :STGNMVH T0547 11 :N 1tfzA 66 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=81360 # 1wcwA.3.27 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 3 :DYGIDIWGN 1wcwA 28 :KLGFTPLLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=81361 # 1usyA.3.67 read from T0547.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1usyA)V73 Warning: unaligning (T0547)I8 because of BadResidue code BAD_PEPTIDE at template residue (1usyA)V73 T0547 3 :DYGI 1usyA 68 :DSQI T0547 9 :WGN 1usyA 74 :WYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=81363 # 1j54A.3.24 read from T0547.t06.many.frag # found chain 1j54A in template set Warning: unaligning (T0547)N11 (1j54A)I33 because E (beta_S) conformation "forbidden" or filtered. T0547 3 :DYGIDIWG 1j54A 25 :YEGHKIIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=81364 # 2aebA.3.41 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)D3 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)Q43 Warning: unaligning (T0547)Y4 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)Q43 Warning: unaligning (T0547)G5 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E44 Warning: unaligning (T0547)I6 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)C45 T0547 7 :DIWGN 2aebA 46 :DVKDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=81365 # 1vpqA.3.46 read from T0547.t06.many.frag # found chain 1vpqA in template set T0547 3 :DYGIDIWGN 1vpqA 35 :VLGFRIVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=81366 # 1w0hA.3.27 read from T0547.t06.many.frag # found chain 1w0hA in training set Warning: unaligning (T0547)D7 (1w0hA)E150 because E (beta_S) conformation "forbidden" or filtered. T0547 3 :DYGI 1w0hA 146 :EFVH T0547 8 :IWGN 1w0hA 151 :IIEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=81368 # 1fcdA.3.66 read from T0547.t06.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)G10 (1fcdA)H74 because N (gamma') conformation "forbidden" or filtered. T0547 3 :DYGIDIW 1fcdA 67 :AHGIQVV T0547 11 :N 1fcdA 75 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=81370 # 1n35A.3.302 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)I6 (1n35A)Y306 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1n35A)M311 because G (3-10) conformation "forbidden" or filtered. T0547 3 :DYG 1n35A 303 :RSD T0547 7 :DIWG 1n35A 307 :KFMY Number of specific fragments extracted= 2 number of extra gaps= 2 total=81372 # 1pp7U.3.53 read from T0547.t06.many.frag # found chain 1pp7U in template set Warning: unaligning (T0547)G10 (1pp7U)S61 because Y (epsilon') conformation "forbidden" or filtered. T0547 3 :DYGIDIW 1pp7U 54 :EIGLSWI T0547 11 :N 1pp7U 62 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=81374 # 1jk4A.3.9 read from T0547.t06.many.frag # found chain 1jk4A in template set Warning: unaligning (T0547)D3 (1jk4A)G16 because L (left) conformation "forbidden" or filtered. T0547 4 :YGIDIWGN 1jk4A 17 :GKGRCFGP Number of specific fragments extracted= 1 number of extra gaps= 1 total=81375 # 1vq2A.3.15 read from T0547.t06.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)G10 (1vq2A)K23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1vq2A)V24 because E (beta_S) conformation "forbidden" or filtered. T0547 3 :DYGIDIW 1vq2A 16 :ESKCCSW Number of specific fragments extracted= 1 number of extra gaps= 1 total=81376 # 1dqgA.3.77 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)Y4 (1dqgA)Q79 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 Warning: unaligning (T0547)N11 (1dqgA)D86 because L (left) conformation "forbidden" or filtered. T0547 3 :D 1dqgA 78 :Y T0547 5 :GIDI 1dqgA 80 :KWEC Number of specific fragments extracted= 2 number of extra gaps= 2 total=81378 # 1uadC.3.48 read from T0547.t06.many.frag # found chain 1uadC in template set T0547 3 :DYGIDIWGN 1uadC 49 :LLTAEWMSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=81379 # 1ow1A.3.32 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)D7 (1ow1A)P3506 because P (beta_P) conformation "forbidden" or filtered. T0547 3 :DYGI 1ow1A 3502 :LKKY T0547 8 :IWGN 1ow1A 3507 :IVWQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=81381 # 1zz1A.3.89 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)D3 (1zz1A)L90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1zz1A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGI 1zz1A 91 :PTG T0547 8 :IWGN 1zz1A 95 :DTGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=81383 # 1p1jA.3.140 read from T0547.t06.many.frag # found chain 1p1jA in training set Warning: unaligning (T0547)D7 (1p1jA)S145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1p1jA)D148 because E (beta_S) conformation "forbidden" or filtered. T0547 3 :DYGI 1p1jA 141 :DFVV T0547 8 :IW 1p1jA 146 :GW T0547 11 :N 1p1jA 149 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=81386 # 1xi1A.4.19 read from T0547.t06.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)Y4 (1xi1A)E20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1xi1A)R23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1xi1A)Y27 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1xi1A)G28 because Y (epsilon') conformation "forbidden" or filtered. T0547 5 :GI 1xi1A 21 :DC T0547 8 :IWG 1xi1A 24 :VWA Number of specific fragments extracted= 2 number of extra gaps= 3 total=81388 # 1u9yA.4.19 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)G10 (1u9yA)R26 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YGIDIW 1u9yA 20 :LNTKLT T0547 11 :NE 1u9yA 27 :VE Number of specific fragments extracted= 2 number of extra gaps= 1 total=81390 # 1vd6A.4.33 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 4 :YGIDIWGNE 1vd6A 34 :AGLDGVELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=81391 # 1dqgA.4.36 read from T0547.t06.many.frag # found chain 1dqgA in training set T0547 4 :YGIDIWGNE 1dqgA 37 :QKFRWVSDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=81392 # 1rzhH.4.185 read from T0547.t06.many.frag # found chain 1rzhH in training set Warning: unaligning (T0547)Y4 (1rzhH)G186 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G5 (1rzhH)S187 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1rzhH)P192 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDIW 1rzhH 188 :TRLL T0547 11 :NE 1rzhH 193 :MQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=81394 # 1qmgA.4.16 read from T0547.t06.many.frag # found chain 1qmgA in training set T0547 4 :YGIDIWGNE 1qmgA 88 :FDSSVFKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=81395 # 1vqoS.4.45 read from T0547.t06.many.frag # found chain 1vqoS in template set Warning: unaligning (T0547)G10 (1vqoS)Q51 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :YGIDIW 1vqoS 45 :YDVTVE T0547 11 :NE 1vqoS 52 :VN Number of specific fragments extracted= 2 number of extra gaps= 1 total=81397 # 1ddwA.4.64 read from T0547.t06.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)G5 (1ddwA)T66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1ddwA)T70 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1ddwA)S71 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :Y 1ddwA 65 :M T0547 6 :IDI 1ddwA 67 :FTK T0547 11 :NE 1ddwA 72 :QK Number of specific fragments extracted= 3 number of extra gaps= 2 total=81400 # 1zpvA.4.28 read from T0547.t06.many.frag # found chain 1zpvA in template set Warning: unaligning (T0547)D7 (1zpvA)N29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1zpvA)S34 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :YGI 1zpvA 26 :LGL T0547 8 :IWGN 1zpvA 30 :IDDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=81402 # 1jr2A.4.46 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)D7 (1jr2A)E29 because N (gamma') conformation "forbidden" or filtered. T0547 4 :YGI 1jr2A 26 :YGL T0547 8 :IWGNE 1jr2A 30 :ATLIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=81404 # 1fjrA.4.138 read from T0547.t06.many.frag # found chain 1fjrA in template set Warning: unaligning (T0547)G5 (1fjrA)K140 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1fjrA)T142 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :Y 1fjrA 139 :D T0547 6 :I 1fjrA 141 :Y T0547 8 :IWGNE 1fjrA 143 :LFENG Number of specific fragments extracted= 3 number of extra gaps= 2 total=81407 # 1usyA.4.68 read from T0547.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)Y4 (1usyA)S69 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G5 (1usyA)Q70 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1usyA)V73 Warning: unaligning (T0547)I8 because of BadResidue code BAD_PEPTIDE at template residue (1usyA)V73 Warning: unaligning (T0547)N11 (1usyA)A76 because L (left) conformation "forbidden" or filtered. T0547 6 :I 1usyA 71 :I T0547 9 :WG 1usyA 74 :WY T0547 12 :E 1usyA 77 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=81410 # 1wu7A.4.36 read from T0547.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G10 (1wu7A)D43 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGIDIW 1wu7A 37 :FGFRRI T0547 11 :NE 1wu7A 44 :FP Number of specific fragments extracted= 2 number of extra gaps= 1 total=81412 # 1knmA.4.41 read from T0547.t06.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)G5 (1knmA)Q43 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :Y 1knmA 42 :Q T0547 6 :IDIWGNE 1knmA 44 :WAATDAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=81414 # 1vq2A.4.16 read from T0547.t06.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)G5 (1vq2A)K18 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1vq2A)G25 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :Y 1vq2A 17 :S T0547 6 :IDIWGN 1vq2A 19 :CCSWKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=81416 # 1n35A.4.303 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)G10 (1n35A)Y310 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1n35A)G312 because S (epsilon) conformation "forbidden" or filtered. T0547 4 :YGIDIW 1n35A 304 :SDYKFM T0547 11 :N 1n35A 311 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=81418 # 1j54A.4.25 read from T0547.t06.many.frag # found chain 1j54A in template set T0547 4 :YGIDIWGNE 1j54A 26 :EGHKIIEIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=81419 # 1fcdA.4.67 read from T0547.t06.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)N11 (1fcdA)D75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1fcdA)S76 because P (beta_P) conformation "forbidden" or filtered. T0547 4 :YGIDIWG 1fcdA 68 :HGIQVVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=81420 # 1zz1A.4.90 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)I6 (1zz1A)G93 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1zz1A)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 4 :YG 1zz1A 91 :PT T0547 7 :DIWGN 1zz1A 94 :GDTGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=81422 # 1ow1A.4.33 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)E12 (1ow1A)G3511 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :YGIDIWGN 1ow1A 3503 :KKYPIVWQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=81423 # 1tfzA.4.58 read from T0547.t06.many.frag # found chain 1tfzA in training set T0547 4 :YGIDIWGNE 1tfzA 59 :TGNMVHASY Number of specific fragments extracted= 1 number of extra gaps= 0 total=81424 # 1wcwA.4.28 read from T0547.t06.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)Y4 (1wcwA)L29 because G (3-10) conformation "forbidden" or filtered. T0547 5 :GIDIWGNE 1wcwA 30 :GFTPLLFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=81425 # 1jk4A.4.10 read from T0547.t06.many.frag # found chain 1jk4A in template set Warning: unaligning (T0547)Y4 (1jk4A)G17 because L (left) conformation "forbidden" or filtered. T0547 5 :GIDIWGNE 1jk4A 18 :KGRCFGPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=81426 # 1pp7U.4.54 read from T0547.t06.many.frag # found chain 1pp7U in template set T0547 4 :YGIDIWGNE 1pp7U 55 :IGLSWISDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=81427 # 1w0hA.4.28 read from T0547.t06.many.frag # found chain 1w0hA in training set T0547 4 :YGIDIWGNE 1w0hA 147 :FVHEIIEFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=81428 # 1uadC.4.49 read from T0547.t06.many.frag # found chain 1uadC in template set Warning: unaligning (T0547)G5 (1uadC)T51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1uadC)S56 because Y (epsilon') conformation "forbidden" or filtered. T0547 4 :Y 1uadC 50 :L T0547 6 :IDIW 1uadC 52 :AEWM T0547 11 :NE 1uadC 57 :AS Number of specific fragments extracted= 3 number of extra gaps= 2 total=81431 # 2aebA.4.42 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)Y4 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)Q43 Warning: unaligning (T0547)G5 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E44 Warning: unaligning (T0547)I6 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)C45 T0547 7 :DIWGNE 2aebA 46 :DVKDYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=81432 # 1vpqA.4.47 read from T0547.t06.many.frag # found chain 1vpqA in template set Warning: unaligning (T0547)G10 (1vpqA)E42 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :YGIDIW 1vpqA 36 :LGFRIV T0547 11 :NE 1vpqA 43 :LN Number of specific fragments extracted= 2 number of extra gaps= 1 total=81434 # 1dqgA.4.78 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 T0547 4 :YGIDI 1dqgA 79 :QKWEC T0547 11 :NE 1dqgA 86 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=81436 # 1iomA.4.7 read from T0547.t06.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)W9 (1iomA)T13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1iomA)E14 because E (beta_S) conformation "forbidden" or filtered. T0547 4 :YGIDI 1iomA 8 :EGVLF T0547 11 :NE 1iomA 15 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=81438 # 1xi1A.5.20 read from T0547.t06.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)G5 (1xi1A)D21 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1xi1A)A26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1xi1A)Y27 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1xi1A)Y29 because E (beta_S) conformation "forbidden" or filtered. T0547 6 :IDIW 1xi1A 22 :CRVW T0547 12 :E 1xi1A 28 :G Number of specific fragments extracted= 2 number of extra gaps= 3 total=81440 # 1u9yA.5.20 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)D7 (1u9yA)K23 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1u9yA)R26 because P (beta_P) conformation "forbidden" or filtered. T0547 5 :GI 1u9yA 21 :NT T0547 8 :IW 1u9yA 24 :LT T0547 11 :NEN 1u9yA 27 :VEY Number of specific fragments extracted= 3 number of extra gaps= 2 total=81443 # 1rzhH.5.186 read from T0547.t06.many.frag # found chain 1rzhH in training set Warning: unaligning (T0547)D7 (1rzhH)R189 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1rzhH)P192 because P (beta_P) conformation "forbidden" or filtered. T0547 5 :GI 1rzhH 187 :ST T0547 8 :IW 1rzhH 190 :LL T0547 11 :NEN 1rzhH 193 :MQM Number of specific fragments extracted= 3 number of extra gaps= 2 total=81446 # 1vd6A.5.34 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 5 :GIDIWGNEN 1vd6A 35 :GLDGVELDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81447 # 1dqgA.5.37 read from T0547.t06.many.frag # found chain 1dqgA in training set T0547 5 :GIDIWGNEN 1dqgA 38 :KFRWVSDSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=81448 # 1ddwA.5.65 read from T0547.t06.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)G5 (1ddwA)T66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1ddwA)S71 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIW 1ddwA 67 :FTKT T0547 11 :NEN 1ddwA 72 :QKF Number of specific fragments extracted= 2 number of extra gaps= 2 total=81450 # 1qmgA.5.17 read from T0547.t06.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)G10 (1qmgA)K94 because P (beta_P) conformation "forbidden" or filtered. T0547 5 :GIDIW 1qmgA 89 :DSSVF T0547 11 :NEN 1qmgA 95 :KEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=81452 # 1vqoS.5.46 read from T0547.t06.many.frag # found chain 1vqoS in template set Warning: unaligning (T0547)I6 (1vqoS)V47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1vqoS)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 5 :G 1vqoS 46 :D T0547 7 :DIWG 1vqoS 48 :TVEQ T0547 12 :EN 1vqoS 53 :NT Number of specific fragments extracted= 3 number of extra gaps= 2 total=81455 # 1ow1A.5.34 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)D7 (1ow1A)P3506 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1ow1A)G3511 because Y (epsilon') conformation "forbidden" or filtered. T0547 5 :GI 1ow1A 3504 :KY T0547 8 :IWGN 1ow1A 3507 :IVWQ T0547 13 :N 1ow1A 3512 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=81458 # 1zpvA.5.29 read from T0547.t06.many.frag # found chain 1zpvA in template set Warning: unaligning (T0547)D7 (1zpvA)N29 because P (beta_P) conformation "forbidden" or filtered. T0547 5 :GI 1zpvA 27 :GL T0547 8 :IWGNEN 1zpvA 30 :IDDISQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=81460 # 1usyA.5.69 read from T0547.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1usyA)V73 Warning: unaligning (T0547)I8 because of BadResidue code BAD_PEPTIDE at template residue (1usyA)V73 Warning: unaligning (T0547)E12 (1usyA)D77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1usyA)F78 because P (beta_P) conformation "forbidden" or filtered. T0547 5 :GI 1usyA 70 :QI T0547 9 :WGN 1usyA 74 :WYA Number of specific fragments extracted= 2 number of extra gaps= 2 total=81462 # 1n35A.5.304 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)I6 (1n35A)Y306 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1n35A)K307 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1n35A)Y310 because P (beta_P) conformation "forbidden" or filtered. T0547 5 :G 1n35A 305 :D T0547 8 :IW 1n35A 308 :FM T0547 11 :NEN 1n35A 311 :MGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=81465 # 1fcdA.5.68 read from T0547.t06.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)N11 (1fcdA)D75 because Y (epsilon') conformation "forbidden" or filtered. T0547 5 :GIDIWG 1fcdA 69 :GIQVVH T0547 12 :EN 1fcdA 76 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=81467 # 1fjrA.5.139 read from T0547.t06.many.frag # found chain 1fjrA in template set Warning: unaligning (T0547)G5 (1fjrA)K140 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1fjrA)N146 because G (3-10) conformation "forbidden" or filtered. T0547 6 :IDIWG 1fjrA 141 :YTLFE T0547 12 :EN 1fjrA 147 :GT Number of specific fragments extracted= 2 number of extra gaps= 2 total=81469 # 1jk4A.5.11 read from T0547.t06.many.frag # found chain 1jk4A in template set T0547 5 :GIDIWGNEN 1jk4A 18 :KGRCFGPSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=81470 # 1vq2A.5.17 read from T0547.t06.many.frag # found chain 1vq2A in template set T0547 5 :GIDIWGNEN 1vq2A 18 :KCCSWKVGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=81471 # 1zz1A.5.91 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)E12 (1zz1A)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 5 :GIDIWGN 1zz1A 92 :TGGDTGD T0547 13 :N 1zz1A 100 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=81473 # 1jr2A.5.47 read from T0547.t06.many.frag # found chain 1jr2A in template set T0547 5 :GIDIWGNEN 1jr2A 27 :GLEATLIPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81474 # 1uadC.5.50 read from T0547.t06.many.frag # found chain 1uadC in template set Warning: unaligning (T0547)G10 (1uadC)S56 because Y (epsilon') conformation "forbidden" or filtered. T0547 5 :GIDIW 1uadC 51 :TAEWM T0547 11 :NEN 1uadC 57 :ASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=81476 # 1j54A.5.26 read from T0547.t06.many.frag # found chain 1j54A in template set Warning: unaligning (T0547)W9 (1j54A)I31 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1j54A)E32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1j54A)I33 because E (beta_S) conformation "forbidden" or filtered. T0547 5 :GIDI 1j54A 27 :GHKI T0547 12 :EN 1j54A 34 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=81478 # 1knmA.5.42 read from T0547.t06.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)E12 (1knmA)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 5 :GIDIWGN 1knmA 43 :QWAATDA T0547 13 :N 1knmA 51 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=81480 # 1tfzA.5.59 read from T0547.t06.many.frag # found chain 1tfzA in training set Warning: unaligning (T0547)G10 (1tfzA)A65 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1tfzA)S66 because E (beta_S) conformation "forbidden" or filtered. T0547 5 :GIDIW 1tfzA 60 :GNMVH T0547 12 :EN 1tfzA 67 :YL Number of specific fragments extracted= 2 number of extra gaps= 1 total=81482 # 1iomA.5.8 read from T0547.t06.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)W9 (1iomA)T13 because Y (epsilon') conformation "forbidden" or filtered. T0547 5 :GIDI 1iomA 9 :GVLF T0547 10 :GNEN 1iomA 14 :ESRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=81484 # 1dqgA.5.79 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G5 (1dqgA)K80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 Warning: unaligning (T0547)E12 (1dqgA)T87 because T (delta_L) conformation "forbidden" or filtered. T0547 6 :IDI 1dqgA 81 :WEC T0547 11 :N 1dqgA 86 :D T0547 13 :N 1dqgA 88 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=81487 # 2cyjA.5.1 read from T0547.t06.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)E12 (2cyjA)G9 because T (delta_L) conformation "forbidden" or filtered. T0547 5 :GIDIWGN 2cyjA 2 :KIEEVRF T0547 13 :N 2cyjA 10 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=81489 # 1pp7U.5.55 read from T0547.t06.many.frag # found chain 1pp7U in template set Warning: unaligning (T0547)D7 (1pp7U)S58 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1pp7U)S61 because Y (epsilon') conformation "forbidden" or filtered. T0547 5 :GI 1pp7U 56 :GL T0547 8 :IW 1pp7U 59 :WI T0547 11 :NEN 1pp7U 62 :DTE Number of specific fragments extracted= 3 number of extra gaps= 2 total=81492 # 1wu7A.5.37 read from T0547.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G10 (1wu7A)D43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1wu7A)F44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1wu7A)P45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1wu7A)S46 because G (3-10) conformation "forbidden" or filtered. T0547 5 :GIDIW 1wu7A 38 :GFRRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=81493 # 2aebA.5.43 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)G5 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E44 Warning: unaligning (T0547)I6 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)C45 Warning: unaligning (T0547)E12 (2aebA)G51 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2aebA)D52 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DIWGN 2aebA 46 :DVKDY Number of specific fragments extracted= 1 number of extra gaps= 2 total=81494 # 2cbiA.5.14 read from T0547.t06.many.frag # found chain 2cbiA in template set Warning: unaligning (T0547)G5 (2cbiA)N45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I8 (2cbiA)P48 because C (cis) conformation "forbidden" or filtered. T0547 6 :ID 2cbiA 46 :LN T0547 9 :WGNEN 2cbiA 49 :TPENL Number of specific fragments extracted= 2 number of extra gaps= 2 total=81496 # 1wcwA.5.29 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 5 :GIDIWGNEN 1wcwA 30 :GFTPLLFPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81497 # 1rzhH.6.187 read from T0547.t06.many.frag # found chain 1rzhH in training set T0547 6 :IDIWGNENF 1rzhH 188 :TRLLPMQMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81498 # 1u9yA.6.21 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 6 :IDIWGNENF 1u9yA 22 :TKLTRVEYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=81499 # 1xi1A.6.21 read from T0547.t06.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)D7 (1xi1A)R23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1xi1A)W25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1xi1A)Y27 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1xi1A)G28 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :I 1xi1A 22 :C T0547 8 :I 1xi1A 24 :V T0547 10 :G 1xi1A 26 :A T0547 13 :NF 1xi1A 29 :YM Number of specific fragments extracted= 4 number of extra gaps= 3 total=81503 # 1qmgA.6.18 read from T0547.t06.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)G10 (1qmgA)K94 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDIW 1qmgA 90 :SSVF T0547 11 :NENF 1qmgA 95 :KEKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81505 # 1ddwA.6.66 read from T0547.t06.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)D7 (1ddwA)T68 because E (beta_S) conformation "forbidden" or filtered. T0547 6 :I 1ddwA 67 :F T0547 8 :IWGNENF 1ddwA 69 :KTSQKFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=81507 # 1ow1A.6.35 read from T0547.t06.many.frag # found chain 1ow1A in training set T0547 6 :IDIWGNENF 1ow1A 3505 :YPIVWQGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=81508 # 1dqgA.6.38 read from T0547.t06.many.frag # found chain 1dqgA in training set T0547 6 :IDIWGNENF 1dqgA 39 :FRWVSDSQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=81509 # 1vqoS.6.47 read from T0547.t06.many.frag # found chain 1vqoS in template set Warning: unaligning (T0547)I6 (1vqoS)V47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1vqoS)T48 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1vqoS)Q51 because E (beta_S) conformation "forbidden" or filtered. T0547 8 :IW 1vqoS 49 :VE T0547 11 :NENF 1vqoS 52 :VNTQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=81511 # 1vd6A.6.35 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 6 :IDIWGNENF 1vd6A 36 :LDGVELDVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=81512 # 1jk4A.6.12 read from T0547.t06.many.frag # found chain 1jk4A in template set T0547 6 :IDIWGNENF 1jk4A 19 :GRCFGPSIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=81513 # 1usyA.6.70 read from T0547.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1usyA)V73 Warning: unaligning (T0547)I8 because of BadResidue code BAD_PEPTIDE at template residue (1usyA)V73 T0547 6 :I 1usyA 71 :I T0547 9 :WGNENF 1usyA 74 :WYADFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81515 # 1n35A.6.305 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)I6 (1n35A)Y306 because L (left) conformation "forbidden" or filtered. T0547 7 :DIWGNENF 1n35A 307 :KFMYMGVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=81516 # 1vq2A.6.18 read from T0547.t06.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)E12 (1vq2A)G25 because E (beta_S) conformation "forbidden" or filtered. T0547 6 :IDIWGN 1vq2A 19 :CCSWKV T0547 13 :NF 1vq2A 26 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81518 # 1zz1A.6.92 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)I6 (1zz1A)G93 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1zz1A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W9 (1zz1A)T96 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1zz1A)G99 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1zz1A)I100 because G (3-10) conformation "forbidden" or filtered. T0547 8 :I 1zz1A 95 :D T0547 10 :GN 1zz1A 97 :GD T0547 14 :F 1zz1A 101 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=81521 # 1fjrA.6.140 read from T0547.t06.many.frag # found chain 1fjrA in template set Warning: unaligning (T0547)I6 (1fjrA)Y141 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D7 (1fjrA)T142 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1fjrA)N146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1fjrA)G147 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1fjrA)T148 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :IWG 1fjrA 143 :LFE T0547 14 :F 1fjrA 149 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=81523 # 1fcdA.6.69 read from T0547.t06.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)G10 (1fcdA)H74 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1fcdA)D75 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIW 1fcdA 70 :IQVV T0547 12 :ENF 1fcdA 76 :SAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=81525 # 1g3p.6.132 read from T0547.t06.many.frag # found chain 1g3p in training set Warning: unaligning (T0547)N13 (1g3p)R140 because E (beta_S) conformation "forbidden" or filtered. T0547 6 :IDIWGNE 1g3p 133 :TFMFQNN T0547 14 :F 1g3p 141 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=81527 # 1dqgA.6.80 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 T0547 6 :IDI 1dqgA 81 :WEC T0547 11 :NENF 1dqgA 86 :DTLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=81529 # 1uadC.6.51 read from T0547.t06.many.frag # found chain 1uadC in template set Warning: unaligning (T0547)G10 (1uadC)S56 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIW 1uadC 52 :AEWM T0547 11 :NENF 1uadC 57 :ASKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=81531 # 1ssxA.6.0 read from T0547.t06.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)I6 because first residue in template chain is (1ssxA)A15A T0547 7 :DIWGNENF 1ssxA 15B:NIVGGIEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=81532 # 1zpvA.6.30 read from T0547.t06.many.frag # found chain 1zpvA in template set T0547 6 :IDIWGNENF 1zpvA 28 :LNIDDISQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=81533 # 1rmd.6.28 read from T0547.t06.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)G10 (1rmd)L33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1rmd)D35 because L (left) conformation "forbidden" or filtered. T0547 6 :IDIW 1rmd 29 :CEHI T0547 11 :N 1rmd 34 :A T0547 13 :NF 1rmd 36 :PV Number of specific fragments extracted= 3 number of extra gaps= 2 total=81536 # 2f6eA.6.98 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)I6 (2f6eA)A100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (2f6eA)G105 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2f6eA)G106 because Y (epsilon') conformation "forbidden" or filtered. T0547 7 :DIWG 2f6eA 101 :MAAA T0547 13 :NF 2f6eA 107 :LF Number of specific fragments extracted= 2 number of extra gaps= 2 total=81538 # 1jb0D.6.38 read from T0547.t06.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)G10 (1jb0D)T43 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1jb0D)A44 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1jb0D)G45 because S (epsilon) conformation "forbidden" or filtered. T0547 6 :IDIW 1jb0D 39 :FEMP T0547 13 :NF 1jb0D 46 :AA Number of specific fragments extracted= 2 number of extra gaps= 1 total=81540 # 1tfzA.6.60 read from T0547.t06.many.frag # found chain 1tfzA in training set Warning: unaligning (T0547)N13 (1tfzA)L68 because P (beta_P) conformation "forbidden" or filtered. T0547 6 :IDIWGNE 1tfzA 61 :NMVHASY T0547 14 :F 1tfzA 69 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=81542 # 1svpA.6.82 read from T0547.t06.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)W9 (1svpA)W191 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1svpA)G194 because S (epsilon) conformation "forbidden" or filtered. T0547 6 :IDI 1svpA 188 :FYN T0547 10 :GN 1svpA 192 :HH T0547 13 :NF 1svpA 195 :AV Number of specific fragments extracted= 3 number of extra gaps= 2 total=81545 # 1iomA.6.9 read from T0547.t06.many.frag # found chain 1iomA in training set T0547 6 :IDIWGNENF 1iomA 10 :VLFTESRMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=81546 # 1j54A.6.27 read from T0547.t06.many.frag # found chain 1j54A in template set T0547 6 :IDIWGNENF 1j54A 28 :HKIIEIGAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81547 # 1knmA.6.43 read from T0547.t06.many.frag # found chain 1knmA in training set T0547 6 :IDIWGNENF 1knmA 44 :WAATDAGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=81548 # 1q9jA.6.49 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)G10 (1q9jA)A54 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1q9jA)H56 because Y (epsilon') conformation "forbidden" or filtered. T0547 6 :IDIW 1q9jA 50 :HPVL T0547 11 :N 1q9jA 55 :S T0547 13 :NF 1q9jA 57 :LE Number of specific fragments extracted= 3 number of extra gaps= 2 total=81551 # 1qmgA.7.19 read from T0547.t06.many.frag # found chain 1qmgA in training set T0547 7 :DIWGNENFI 1qmgA 91 :SVFKKEKVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=81552 # 1rzhH.7.188 read from T0547.t06.many.frag # found chain 1rzhH in training set Warning: unaligning (T0547)G10 (1rzhH)P192 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DIW 1rzhH 189 :RLL T0547 11 :NENFI 1rzhH 193 :MQMVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=81554 # 1ow1A.7.36 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)E12 (1ow1A)G3511 because Y (epsilon') conformation "forbidden" or filtered. T0547 7 :DIWGN 1ow1A 3506 :PIVWQ T0547 13 :NFI 1ow1A 3512 :LLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=81556 # 1u9yA.7.22 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 7 :DIWGNENFI 1u9yA 23 :KLTRVEYKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=81557 # 1vd6A.7.36 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)N13 (1vd6A)V43 because E (beta_S) conformation "forbidden" or filtered. T0547 7 :DIWGNE 1vd6A 37 :DGVELD T0547 14 :FI 1vd6A 44 :WP Number of specific fragments extracted= 2 number of extra gaps= 1 total=81559 # 1xi1A.7.22 read from T0547.t06.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)D7 (1xi1A)R23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1xi1A)G28 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IWGN 1xi1A 24 :VWAY T0547 13 :NFI 1xi1A 29 :YMN Number of specific fragments extracted= 2 number of extra gaps= 2 total=81561 # 1svpA.7.83 read from T0547.t06.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)N11 (1svpA)H193 because G (3-10) conformation "forbidden" or filtered. T0547 7 :DIWG 1svpA 189 :YNWH T0547 12 :ENFI 1svpA 194 :GAVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=81563 # 1vq2A.7.19 read from T0547.t06.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)N11 (1vq2A)V24 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1vq2A)A26 because E (beta_S) conformation "forbidden" or filtered. T0547 7 :DIWG 1vq2A 20 :CSWK T0547 12 :E 1vq2A 25 :G T0547 14 :FI 1vq2A 27 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=81566 # 1ddwA.7.67 read from T0547.t06.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)F14 (1ddwA)G75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I15 (1ddwA)Q76 because Y (epsilon') conformation "forbidden" or filtered. T0547 7 :DIWGNEN 1ddwA 68 :TKTSQKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=81567 # 1dqgA.7.39 read from T0547.t06.many.frag # found chain 1dqgA in training set T0547 7 :DIWGNENFI 1dqgA 40 :RWVSDSQIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=81568 # 1jk4A.7.13 read from T0547.t06.many.frag # found chain 1jk4A in template set T0547 7 :DIWGNENFI 1jk4A 20 :RCFGPSICC Number of specific fragments extracted= 1 number of extra gaps= 0 total=81569 # 1rmd.7.29 read from T0547.t06.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)D7 (1rmd)E30 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1rmd)D35 because L (left) conformation "forbidden" or filtered. T0547 8 :IWGN 1rmd 31 :HILA T0547 13 :NFI 1rmd 36 :PVE Number of specific fragments extracted= 2 number of extra gaps= 2 total=81571 # 1g3p.7.133 read from T0547.t06.many.frag # found chain 1g3p in training set T0547 7 :DIWGNENFI 1g3p 134 :FMFQNNRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=81572 # 1zz1A.7.93 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)E12 (1zz1A)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 7 :DIWGN 1zz1A 94 :GDTGD T0547 13 :NFI 1zz1A 100 :ITM Number of specific fragments extracted= 2 number of extra gaps= 1 total=81574 # 1usyA.7.71 read from T0547.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1usyA)V73 Warning: unaligning (T0547)I8 because of BadResidue code BAD_PEPTIDE at template residue (1usyA)V73 Warning: unaligning (T0547)E12 (1usyA)D77 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :WGN 1usyA 74 :WYA T0547 13 :NFI 1usyA 78 :FVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=81576 # 1n35A.7.306 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)G10 (1n35A)Y310 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DIW 1n35A 307 :KFM T0547 11 :NENFI 1n35A 311 :MGVMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=81578 # 1ssxA.7.1 read from T0547.t06.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)D7 (1ssxA)N15B because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1ssxA)G18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1ssxA)G19 because T (delta_L) conformation "forbidden" or filtered. T0547 8 :IW 1ssxA 16 :IV T0547 12 :ENFI 1ssxA 31 :IEYS Number of specific fragments extracted= 2 number of extra gaps= 2 total=81580 # 1tt7A.7.98 read from T0547.t06.many.frag # found chain 1tt7A in template set Warning: unaligning (T0547)E12 (1tt7A)E104 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DIWGN 1tt7A 99 :DGGLS T0547 13 :NFI 1tt7A 105 :YAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=81582 # 1jb0D.7.39 read from T0547.t06.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)N11 (1jb0D)A44 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1jb0D)G45 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1jb0D)A46 because P (beta_P) conformation "forbidden" or filtered. T0547 7 :DIWG 1jb0D 40 :EMPT T0547 14 :FI 1jb0D 47 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81584 # 1vqoS.7.48 read from T0547.t06.many.frag # found chain 1vqoS in template set Warning: unaligning (T0547)G10 (1vqoS)Q51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1vqoS)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 7 :DIW 1vqoS 48 :TVE T0547 12 :ENFI 1vqoS 53 :NTQN Number of specific fragments extracted= 2 number of extra gaps= 1 total=81586 # 1h4gA.7.107 read from T0547.t06.many.frag # found chain 1h4gA in training set Warning: unaligning (T0547)G10 (1h4gA)P111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1h4gA)G113 because Y (epsilon') conformation "forbidden" or filtered. T0547 7 :DIW 1h4gA 108 :GAT T0547 11 :N 1h4gA 112 :K T0547 13 :NFI 1h4gA 114 :TIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=81589 # 2cyjA.7.3 read from T0547.t06.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)G10 (2cyjA)R7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2cyjA)G9 because T (delta_L) conformation "forbidden" or filtered. T0547 7 :DIW 2cyjA 4 :EEV T0547 11 :N 2cyjA 8 :F T0547 13 :NFI 2cyjA 10 :LVK Number of specific fragments extracted= 3 number of extra gaps= 2 total=81592 # 1fjrA.7.141 read from T0547.t06.many.frag # found chain 1fjrA in template set Warning: unaligning (T0547)N11 (1fjrA)N146 because G (3-10) conformation "forbidden" or filtered. T0547 7 :DIWG 1fjrA 142 :TLFE T0547 12 :ENFI 1fjrA 147 :GTFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=81594 # 1dqgA.7.81 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 Warning: unaligning (T0547)E12 (1dqgA)T87 because T (delta_L) conformation "forbidden" or filtered. T0547 7 :DI 1dqgA 82 :EC T0547 11 :N 1dqgA 86 :D T0547 13 :NFI 1dqgA 88 :LFG Number of specific fragments extracted= 3 number of extra gaps= 2 total=81597 # 1yzyA.7.112 read from T0547.t06.many.frag # found chain 1yzyA in template set T0547 7 :DIWGNENFI 1yzyA 112 :PALPVNGRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=81598 # 2f6eA.7.77 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)D7 (2f6eA)S79 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (2f6eA)V82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2f6eA)G84 because S (epsilon) conformation "forbidden" or filtered. T0547 8 :IW 2f6eA 80 :KA T0547 11 :N 2f6eA 83 :T T0547 13 :NFI 2f6eA 85 :WQT Number of specific fragments extracted= 3 number of extra gaps= 3 total=81601 # 1uadC.7.52 read from T0547.t06.many.frag # found chain 1uadC in template set T0547 7 :DIWGNENFI 1uadC 53 :EWMSASKIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81602 # 2f6eA.7.99 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)W9 (2f6eA)A103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (2f6eA)A104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2f6eA)G106 because Y (epsilon') conformation "forbidden" or filtered. T0547 7 :DI 2f6eA 101 :MA T0547 11 :N 2f6eA 105 :G T0547 13 :NFI 2f6eA 107 :LFE Number of specific fragments extracted= 3 number of extra gaps= 2 total=81605 # 2nlrA.7.133 read from T0547.t06.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)I8 (2nlrA)G135 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2nlrA)G139 because Y (epsilon') conformation "forbidden" or filtered. T0547 7 :D 2nlrA 134 :I T0547 9 :WGN 2nlrA 136 :SPV T0547 13 :NFI 2nlrA 140 :TAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=81608 # 1oxxK.7.54 read from T0547.t06.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)D7 (1oxxK)D55 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IWGNENFI 1oxxK 56 :VPSTGELY Number of specific fragments extracted= 1 number of extra gaps= 1 total=81609 # 1qmgA.8.20 read from T0547.t06.many.frag # found chain 1qmgA in training set T0547 8 :IWGNENFII 1qmgA 92 :VFKKEKVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=81610 # 1svpA.8.84 read from T0547.t06.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)W9 (1svpA)W191 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1svpA)G194 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1svpA)A195 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :I 1svpA 190 :N T0547 10 :GN 1svpA 192 :HH T0547 14 :FII 1svpA 196 :VQY Number of specific fragments extracted= 3 number of extra gaps= 2 total=81613 # 1rzhH.8.189 read from T0547.t06.many.frag # found chain 1rzhH in training set T0547 8 :IWGNENFII 1rzhH 190 :LLPMQMVKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81614 # 1ow1A.8.37 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)G10 (1ow1A)W3509 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1ow1A)Q3510 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1ow1A)G3511 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IW 1ow1A 3507 :IV T0547 13 :NFII 1ow1A 3512 :LLAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=81616 # 1ssxA.8.2 read from T0547.t06.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)G10 (1ssxA)G18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1ssxA)G19 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1ssxA)I31 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :IW 1ssxA 16 :IV T0547 13 :NFII 1ssxA 32 :EYSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=81618 # 1g3p.8.134 read from T0547.t06.many.frag # found chain 1g3p in training set Warning: unaligning (T0547)N11 (1g3p)N138 because T (delta_L) conformation "forbidden" or filtered. T0547 8 :IWG 1g3p 135 :MFQ T0547 12 :ENFII 1g3p 139 :NRFRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=81620 # 1u9yA.8.23 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)W9 (1u9yA)T25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (1u9yA)R26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1u9yA)E28 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :I 1u9yA 24 :L T0547 11 :N 1u9yA 27 :V T0547 13 :NFII 1u9yA 29 :YKRF Number of specific fragments extracted= 3 number of extra gaps= 2 total=81623 # 1jb0D.8.40 read from T0547.t06.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)N11 (1jb0D)A44 because S (epsilon) conformation "forbidden" or filtered. T0547 8 :IWG 1jb0D 41 :MPT T0547 12 :ENFII 1jb0D 45 :GAAVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=81625 # 1vd6A.8.37 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 8 :IWGNENFII 1vd6A 38 :GVELDVWPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=81626 # 1dqgA.8.40 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G10 (1dqgA)S43 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IW 1dqgA 41 :WV T0547 11 :NENFII 1dqgA 44 :DSQIMS Number of specific fragments extracted= 2 number of extra gaps= 1 total=81628 # 1h4gA.8.108 read from T0547.t06.many.frag # found chain 1h4gA in training set Warning: unaligning (T0547)G10 (1h4gA)P111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1h4gA)G113 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I16 (1h4gA)V117 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IW 1h4gA 109 :AT T0547 11 :N 1h4gA 112 :K T0547 13 :NFI 1h4gA 114 :TIT Number of specific fragments extracted= 3 number of extra gaps= 3 total=81631 # 2cyjA.8.4 read from T0547.t06.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)E12 (2cyjA)G9 because T (delta_L) conformation "forbidden" or filtered. T0547 8 :IWGN 2cyjA 5 :EVRF T0547 13 :NFII 2cyjA 10 :LVKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=81633 # 1vq2A.8.20 read from T0547.t06.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)G10 (1vq2A)K23 because E (beta_S) conformation "forbidden" or filtered. T0547 8 :IW 1vq2A 21 :SW T0547 11 :NENFII 1vq2A 24 :VGAVIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=81635 # 1xi1A.8.23 read from T0547.t06.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)N11 (1xi1A)Y27 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1xi1A)G28 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IWG 1xi1A 24 :VWA T0547 13 :NFII 1xi1A 29 :YMNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=81637 # 1jk4A.8.14 read from T0547.t06.many.frag # found chain 1jk4A in template set T0547 8 :IWGNENFII 1jk4A 21 :CFGPSICCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=81638 # 1dqgA.8.82 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 Warning: unaligning (T0547)N13 (1dqgA)L88 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :I 1dqgA 83 :C T0547 11 :NE 1dqgA 86 :DT T0547 14 :FII 1dqgA 89 :FGI Number of specific fragments extracted= 3 number of extra gaps= 2 total=81641 # 1rmd.8.30 read from T0547.t06.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)E12 (1rmd)D35 because L (left) conformation "forbidden" or filtered. T0547 8 :IWGN 1rmd 31 :HILA T0547 13 :NFII 1rmd 36 :PVET Number of specific fragments extracted= 2 number of extra gaps= 1 total=81643 # 1mgtA.8.0 read from T0547.t06.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)I8 because first residue in template chain is (1mgtA)M1 Warning: unaligning (T0547)N11 (1mgtA)V4 because E (beta_S) conformation "forbidden" or filtered. T0547 9 :WG 1mgtA 2 :LS T0547 12 :ENFII 1mgtA 5 :EKFRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81645 # 1tt7A.8.99 read from T0547.t06.many.frag # found chain 1tt7A in template set Warning: unaligning (T0547)G10 (1tt7A)L102 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1tt7A)S103 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IW 1tt7A 100 :GG T0547 12 :ENFII 1tt7A 104 :EYASV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81647 # 1ddwA.8.68 read from T0547.t06.many.frag # found chain 1ddwA in training set T0547 8 :IWGNENFII 1ddwA 69 :KTSQKFGQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=81648 # 2f6eA.8.78 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)W9 (2f6eA)A81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (2f6eA)T83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2f6eA)G84 because S (epsilon) conformation "forbidden" or filtered. T0547 8 :I 2f6eA 80 :K T0547 10 :G 2f6eA 82 :V T0547 13 :NFII 2f6eA 85 :WQTI Number of specific fragments extracted= 3 number of extra gaps= 2 total=81651 # 1yzyA.8.113 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)W9 (1yzyA)L114 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1yzyA)G118 because L (left) conformation "forbidden" or filtered. T0547 8 :I 1yzyA 113 :A T0547 10 :GNE 1yzyA 115 :PVN T0547 14 :FII 1yzyA 119 :RTI Number of specific fragments extracted= 3 number of extra gaps= 2 total=81654 # 1zz1A.8.94 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)N13 (1zz1A)I100 because G (3-10) conformation "forbidden" or filtered. T0547 8 :IWGNE 1zz1A 95 :DTGDG T0547 14 :FII 1zz1A 101 :TMM Number of specific fragments extracted= 2 number of extra gaps= 1 total=81656 # 1eu1A.8.12 read from T0547.t06.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)E12 (1eu1A)F17 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IWGN 1eu1A 13 :HWGV T0547 13 :NFII 1eu1A 18 :KARV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81658 # 1zy9A.8.130 read from T0547.t06.many.frag # found chain 1zy9A in template set Warning: unaligning (T0547)G10 (1zy9A)A121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1zy9A)F124 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :IW 1zy9A 119 :KI T0547 11 :NE 1zy9A 122 :HP T0547 14 :FII 1zy9A 125 :FAV Number of specific fragments extracted= 3 number of extra gaps= 2 total=81661 # 1d9uA.8.46 read from T0547.t06.many.frag # found chain 1d9uA in template set T0547 8 :IWGNENFII 1d9uA 47 :DHPRKLVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=81662 # 2az4A.8.146 read from T0547.t06.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)W9 (2az4A)N148 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (2az4A)K149 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (2az4A)N150 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (2az4A)V152 because E (beta_S) conformation "forbidden" or filtered. T0547 8 :I 2az4A 147 :L T0547 12 :E 2az4A 151 :D T0547 14 :FII 2az4A 153 :IKV Number of specific fragments extracted= 3 number of extra gaps= 2 total=81665 # 1mj5A.8.7 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G10 (1mj5A)E10 because P (beta_P) conformation "forbidden" or filtered. T0547 8 :IW 1mj5A 8 :FG T0547 11 :NENFII 1mj5A 11 :KKFIEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=81667 # 1iomA.8.11 read from T0547.t06.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)W9 (1iomA)T13 because Y (epsilon') conformation "forbidden" or filtered. T0547 8 :I 1iomA 12 :F T0547 10 :GNENFII 1iomA 14 :ESRMCYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=81669 # 2nlrA.8.134 read from T0547.t06.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)I8 (2nlrA)G135 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G10 (2nlrA)P137 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2nlrA)G139 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :W 2nlrA 136 :S T0547 11 :N 2nlrA 138 :V T0547 13 :NFII 2nlrA 140 :TASV Number of specific fragments extracted= 3 number of extra gaps= 3 total=81672 # 1qmgA.9.21 read from T0547.t06.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)K17 (1qmgA)S101 because L (left) conformation "forbidden" or filtered. T0547 9 :WGNENFII 1qmgA 93 :FKKEKVTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=81673 # 1svpA.9.85 read from T0547.t06.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)E12 (1svpA)G194 because S (epsilon) conformation "forbidden" or filtered. T0547 9 :WGN 1svpA 191 :WHH T0547 13 :NFIIK 1svpA 195 :AVQYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=81675 # 1rzhH.9.190 read from T0547.t06.many.frag # found chain 1rzhH in training set Warning: unaligning (T0547)G10 (1rzhH)P192 because P (beta_P) conformation "forbidden" or filtered. T0547 9 :W 1rzhH 191 :L T0547 11 :NENFIIK 1rzhH 193 :MQMVKVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=81677 # 2cyjA.9.5 read from T0547.t06.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)G10 (2cyjA)R7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2cyjA)G9 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2cyjA)D14 because L (left) conformation "forbidden" or filtered. T0547 9 :W 2cyjA 6 :V T0547 11 :N 2cyjA 8 :F T0547 13 :NFII 2cyjA 10 :LVKI Number of specific fragments extracted= 3 number of extra gaps= 3 total=81680 # 1dqgA.9.83 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)W9 because of BadResidue code BAD_PEPTIDE in next template residue (1dqgA)N85 Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 Warning: unaligning (T0547)E12 (1dqgA)T87 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1dqgA)L88 because P (beta_P) conformation "forbidden" or filtered. T0547 11 :N 1dqgA 86 :D T0547 14 :FIIK 1dqgA 89 :FGIK Number of specific fragments extracted= 2 number of extra gaps= 2 total=81682 # 1ssxA.9.3 read from T0547.t06.many.frag # found chain 1ssxA in template set T0547 9 :WGNENFIIK 1ssxA 17 :VGGIEYSIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=81683 # 1yzyA.9.114 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)N13 (1yzyA)G118 because L (left) conformation "forbidden" or filtered. T0547 9 :WGNE 1yzyA 114 :LPVN T0547 14 :FIIK 1yzyA 119 :RTIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=81685 # 1ow1A.9.38 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)G10 (1ow1A)W3509 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1ow1A)L3512 because E (beta_S) conformation "forbidden" or filtered. T0547 9 :W 1ow1A 3508 :V T0547 11 :NE 1ow1A 3510 :QG T0547 14 :FIIK 1ow1A 3513 :LALK Number of specific fragments extracted= 3 number of extra gaps= 2 total=81688 # 1jb0D.9.41 read from T0547.t06.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)N11 (1jb0D)A44 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1jb0D)A46 because P (beta_P) conformation "forbidden" or filtered. T0547 9 :WG 1jb0D 42 :PT T0547 12 :E 1jb0D 45 :G T0547 14 :FIIK 1jb0D 47 :AVMR Number of specific fragments extracted= 3 number of extra gaps= 2 total=81691 # 1g3p.9.135 read from T0547.t06.many.frag # found chain 1g3p in training set Warning: unaligning (T0547)N11 (1g3p)N138 because T (delta_L) conformation "forbidden" or filtered. T0547 9 :WG 1g3p 136 :FQ T0547 12 :ENFIIK 1g3p 139 :NRFRNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=81693 # 1zy9A.9.131 read from T0547.t06.many.frag # found chain 1zy9A in template set Warning: unaligning (T0547)N13 (1zy9A)F124 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :WGNE 1zy9A 120 :IAHP T0547 14 :FIIK 1zy9A 125 :FAVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=81695 # 1vd6A.9.38 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)E12 (1vd6A)D42 because P (beta_P) conformation "forbidden" or filtered. T0547 9 :WGN 1vd6A 39 :VEL T0547 13 :NFIIK 1vd6A 43 :VWPTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=81697 # 2f6eA.9.79 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)G10 (2f6eA)V82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (2f6eA)G84 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2f6eA)N89 because L (left) conformation "forbidden" or filtered. T0547 9 :W 2f6eA 81 :A T0547 11 :N 2f6eA 83 :T T0547 13 :NFII 2f6eA 85 :WQTI Number of specific fragments extracted= 3 number of extra gaps= 3 total=81700 # 1rmd.9.31 read from T0547.t06.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)G10 (1rmd)L33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1rmd)D35 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1rmd)P36 because P (beta_P) conformation "forbidden" or filtered. T0547 9 :W 1rmd 32 :I T0547 11 :N 1rmd 34 :A T0547 14 :FIIK 1rmd 37 :VETS Number of specific fragments extracted= 3 number of extra gaps= 2 total=81703 # 1mgtA.9.1 read from T0547.t06.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)N11 (1mgtA)V4 because E (beta_S) conformation "forbidden" or filtered. T0547 9 :WG 1mgtA 2 :LS T0547 12 :ENFIIK 1mgtA 5 :EKFRVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=81705 # 1eu1A.9.13 read from T0547.t06.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)G10 (1eu1A)G15 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1eu1A)V16 because P (beta_P) conformation "forbidden" or filtered. T0547 9 :W 1eu1A 14 :W T0547 12 :ENFIIK 1eu1A 17 :FKARVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=81707 # 1h4gA.9.109 read from T0547.t06.many.frag # found chain 1h4gA in training set Warning: unaligning (T0547)I16 (1h4gA)V117 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :WGNENFI 1h4gA 110 :TPKGTIT T0547 17 :K 1h4gA 118 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=81709 # 1dqgA.9.41 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G10 (1dqgA)S43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1dqgA)Q46 because E (beta_S) conformation "forbidden" or filtered. T0547 9 :W 1dqgA 42 :V T0547 11 :NE 1dqgA 44 :DS T0547 14 :FIIK 1dqgA 47 :IMSV Number of specific fragments extracted= 3 number of extra gaps= 2 total=81712 # 1jk4A.9.15 read from T0547.t06.many.frag # found chain 1jk4A in template set T0547 9 :WGNENFIIK 1jk4A 22 :FGPSICCGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=81713 # 1vq2A.9.21 read from T0547.t06.many.frag # found chain 1vq2A in template set T0547 9 :WGNENFIIK 1vq2A 22 :WKVGAVIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=81714 # 1u9yA.9.24 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 9 :WGNENFIIK 1u9yA 25 :TRVEYKRFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=81715 # 1tt7A.9.100 read from T0547.t06.many.frag # found chain 1tt7A in template set Warning: unaligning (T0547)G10 (1tt7A)L102 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1tt7A)S103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1tt7A)Y105 because S (epsilon) conformation "forbidden" or filtered. T0547 9 :W 1tt7A 101 :G T0547 12 :E 1tt7A 104 :E T0547 14 :FIIK 1tt7A 106 :ASVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=81718 1xiwA expands to /projects/compbio/data/pdb/1xiw.pdb.gz 1xiwA:# 1xiwA.9.55 read from T0547.t06.many.frag # adding 1xiwA to template set # found chain 1xiwA in template set Warning: unaligning (T0547)G10 (1xiwA)D57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1xiwA)E58 because S (epsilon) conformation "forbidden" or filtered. T0547 9 :W 1xiwA 56 :S T0547 12 :ENFIIK 1xiwA 59 :DHLSLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=81720 # 1d9uA.9.47 read from T0547.t06.many.frag # found chain 1d9uA in template set Warning: unaligning (T0547)N11 (1d9uA)R50 because L (left) conformation "forbidden" or filtered. T0547 9 :WG 1d9uA 48 :HP T0547 12 :ENFIIK 1d9uA 51 :KLVTLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=81722 # 1mj5A.9.8 read from T0547.t06.many.frag # found chain 1mj5A in training set T0547 9 :WGNENFIIK 1mj5A 9 :GEKKFIEIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=81723 # 1eexA.9.35 read from T0547.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)W9 (1eexA)D36 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1eexA)S40 because Y (epsilon') conformation "forbidden" or filtered. T0547 10 :GNE 1eexA 37 :PKP T0547 14 :FIIK 1eexA 41 :IKIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=81725 # 1rutX.9.107 read from T0547.t06.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)G10 (1rutX)P124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F14 (1rutX)F128 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :W 1rutX 123 :V T0547 11 :NEN 1rutX 125 :GDR T0547 15 :IIK 1rutX 129 :HYI Number of specific fragments extracted= 3 number of extra gaps= 2 total=81728 # 3vub.9.48 read from T0547.t06.many.frag # found chain 3vub in training set Warning: unaligning (T0547)K17 (3vub)G57 because L (left) conformation "forbidden" or filtered. T0547 9 :WGNENFII 3vub 49 :ELYPVVHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=81729 # 1ddwA.9.69 read from T0547.t06.many.frag # found chain 1ddwA in training set Warning: unaligning (T0547)G10 (1ddwA)S71 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :W 1ddwA 70 :T T0547 11 :NENFIIK 1ddwA 72 :QKFGQWA Number of specific fragments extracted= 2 number of extra gaps= 1 total=81731 # 1xi1A.9.24 read from T0547.t06.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)N11 (1xi1A)Y27 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1xi1A)G28 because Y (epsilon') conformation "forbidden" or filtered. T0547 9 :WG 1xi1A 25 :WA T0547 13 :NFIIK 1xi1A 29 :YMNIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=81733 # 1yzyA.10.115 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)N13 (1yzyA)G118 because L (left) conformation "forbidden" or filtered. T0547 10 :GNE 1yzyA 115 :PVN T0547 14 :FIIKN 1yzyA 119 :RTIFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=81735 # 1rzhH.10.191 read from T0547.t06.many.frag # found chain 1rzhH in training set T0547 10 :GNENFIIKN 1rzhH 192 :PMQMVKVQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=81736 # 1qmgA.10.22 read from T0547.t06.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)G10 (1qmgA)K94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1qmgA)K95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1qmgA)E96 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1qmgA)G102 because T (delta_L) conformation "forbidden" or filtered. T0547 13 :NFIIK 1qmgA 97 :KVTLS Number of specific fragments extracted= 1 number of extra gaps= 2 total=81737 # 1svpA.10.86 read from T0547.t06.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)N11 (1svpA)H193 because G (3-10) conformation "forbidden" or filtered. T0547 10 :G 1svpA 192 :H T0547 12 :ENFIIKN 1svpA 194 :GAVQYSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=81739 # 1zy9A.10.132 read from T0547.t06.many.frag # found chain 1zy9A in template set Warning: unaligning (T0547)N13 (1zy9A)F124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1zy9A)E128 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1zy9A)D129 because L (left) conformation "forbidden" or filtered. T0547 10 :GNE 1zy9A 121 :AHP T0547 14 :FII 1zy9A 125 :FAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=81741 # 2cyjA.10.6 read from T0547.t06.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)K17 (2cyjA)D14 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (2cyjA)G15 because T (delta_L) conformation "forbidden" or filtered. T0547 10 :GNENFII 2cyjA 7 :RFGLVKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=81742 # 1eu1A.10.14 read from T0547.t06.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)E12 (1eu1A)F17 because Y (epsilon') conformation "forbidden" or filtered. T0547 10 :GN 1eu1A 15 :GV T0547 13 :NFIIKN 1eu1A 18 :KARVEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=81744 # 1dqgA.10.84 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G10 because of BadResidue code BAD_PEPTIDE at template residue (1dqgA)N85 Warning: unaligning (T0547)N11 (1dqgA)D86 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1dqgA)T87 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1dqgA)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 13 :NFIIK 1dqgA 88 :LFGIK Number of specific fragments extracted= 1 number of extra gaps= 2 total=81745 # 1ow1A.10.39 read from T0547.t06.many.frag # found chain 1ow1A in training set T0547 10 :GNENFIIKN 1ow1A 3509 :WQGLLALKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=81746 # 2f6eA.10.80 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)E12 (2f6eA)G84 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2f6eA)N89 because L (left) conformation "forbidden" or filtered. T0547 10 :GN 2f6eA 82 :VT T0547 13 :NFII 2f6eA 85 :WQTI T0547 18 :N 2f6eA 90 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=81749 # 1ssxA.10.4 read from T0547.t06.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)N11 (1ssxA)G19 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1ssxA)N36 because L (left) conformation "forbidden" or filtered. T0547 10 :G 1ssxA 18 :G T0547 12 :ENFII 1ssxA 31 :IEYSI T0547 18 :N 1ssxA 38 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=81752 # 1vd6A.10.39 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)N13 (1vd6A)V43 because E (beta_S) conformation "forbidden" or filtered. T0547 10 :GNE 1vd6A 40 :ELD T0547 14 :FIIKN 1vd6A 44 :WPTRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=81754 # 1mgtA.10.2 read from T0547.t06.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)G10 (1mgtA)S3 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1mgtA)G10 because S (epsilon) conformation "forbidden" or filtered. T0547 11 :NENFII 1mgtA 4 :VEKFRV T0547 18 :N 1mgtA 11 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=81756 # 1j2zA.10.176 read from T0547.t06.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)N13 (1j2zA)Y180 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1j2zA)E184 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1j2zA)G185 because S (epsilon) conformation "forbidden" or filtered. T0547 10 :GNE 1j2zA 177 :VPP T0547 14 :FII 1j2zA 181 :CTV Number of specific fragments extracted= 2 number of extra gaps= 2 total=81758 # 1jb0D.10.42 read from T0547.t06.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)G10 (1jb0D)T43 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1jb0D)A44 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1jb0D)A46 because P (beta_P) conformation "forbidden" or filtered. T0547 12 :E 1jb0D 45 :G T0547 14 :FIIKN 1jb0D 47 :AVMRE Number of specific fragments extracted= 2 number of extra gaps= 2 total=81760 # 1p1mA.10.16 read from T0547.t06.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)G10 (1p1mA)F17 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1p1mA)G19 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1p1mA)A20 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :N 1p1mA 18 :W T0547 14 :FIIKN 1p1mA 21 :VEIEN Number of specific fragments extracted= 2 number of extra gaps= 2 total=81762 # 1mj5A.10.9 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)K17 (1mj5A)K17 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1mj5A)G18 because T (delta_L) conformation "forbidden" or filtered. T0547 10 :GNENFII 1mj5A 10 :EKKFIEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=81763 # 1vq2A.10.22 read from T0547.t06.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)G10 (1vq2A)K23 because E (beta_S) conformation "forbidden" or filtered. T0547 11 :NENFIIKN 1vq2A 24 :VGAVIEKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=81764 # 1g3p.10.136 read from T0547.t06.many.frag # found chain 1g3p in training set Warning: unaligning (T0547)N11 (1g3p)N138 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1g3p)Q145 because L (left) conformation "forbidden" or filtered. T0547 10 :G 1g3p 137 :Q T0547 12 :ENFIIK 1g3p 139 :NRFRNR Number of specific fragments extracted= 2 number of extra gaps= 2 total=81766 # 1eexA.10.36 read from T0547.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)G10 (1eexA)P37 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1eexA)S40 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :NE 1eexA 38 :KP T0547 14 :FIIKN 1eexA 41 :IKIVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=81768 # 1rmd.10.32 read from T0547.t06.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)G10 (1rmd)L33 because P (beta_P) conformation "forbidden" or filtered. T0547 11 :NENFIIKN 1rmd 34 :ADPVETSC Number of specific fragments extracted= 1 number of extra gaps= 1 total=81769 # 1h4gA.10.110 read from T0547.t06.many.frag # found chain 1h4gA in training set Warning: unaligning (T0547)G10 (1h4gA)P111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1h4gA)G113 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I16 (1h4gA)V117 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :N 1h4gA 112 :K T0547 13 :NFI 1h4gA 114 :TIT T0547 17 :KN 1h4gA 118 :DG Number of specific fragments extracted= 3 number of extra gaps= 3 total=81772 # 1tt7A.10.101 read from T0547.t06.many.frag # found chain 1tt7A in template set Warning: unaligning (T0547)G10 (1tt7A)L102 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1tt7A)S103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1tt7A)Y105 because S (epsilon) conformation "forbidden" or filtered. T0547 12 :E 1tt7A 104 :E T0547 14 :FIIKN 1tt7A 106 :ASVPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=81774 # 1u9yA.10.25 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 10 :GNENFIIKN 1u9yA 26 :RVEYKRFPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=81775 # 1xiwA.10.56 read from T0547.t06.many.frag # found chain 1xiwA in template set Warning: unaligning (T0547)G10 (1xiwA)D57 because E (beta_S) conformation "forbidden" or filtered. T0547 11 :NENFIIKN 1xiwA 58 :EDHLSLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=81776 # 3vub.10.49 read from T0547.t06.many.frag # found chain 3vub in training set Warning: unaligning (T0547)K17 (3vub)G57 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (3vub)D58 because L (left) conformation "forbidden" or filtered. T0547 10 :GNENFII 3vub 50 :LYPVVHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=81777 # 1xi1A.10.25 read from T0547.t06.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)G10 (1xi1A)A26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1xi1A)Y27 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1xi1A)G28 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :NFIIKN 1xi1A 29 :YMNIED Number of specific fragments extracted= 1 number of extra gaps= 1 total=81778 # 1rutX.10.108 read from T0547.t06.many.frag # found chain 1rutX in training set Warning: unaligning (T0547)G10 (1rutX)P124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N11 (1rutX)G125 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1rutX)D126 because P (beta_P) conformation "forbidden" or filtered. T0547 13 :NFIIKN 1rutX 127 :RFHYIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=81779 # 1dqgA.10.42 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)G10 (1dqgA)S43 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :NENFIIKN 1dqgA 44 :DSQIMSVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=81780 # 1d9uA.10.48 read from T0547.t06.many.frag # found chain 1d9uA in template set Warning: unaligning (T0547)E12 (1d9uA)K51 because E (beta_S) conformation "forbidden" or filtered. T0547 10 :GN 1d9uA 49 :PR T0547 13 :NFIIKN 1d9uA 52 :LVTLNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=81782 # 1yzyA.11.116 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)N18 (1yzyA)N123 because L (left) conformation "forbidden" or filtered. T0547 11 :NENFIIK 1yzyA 116 :VNGRTIF T0547 19 :G 1yzyA 124 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=81784 # 1ow1A.11.40 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)E12 (1ow1A)G3511 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :N 1ow1A 3510 :Q T0547 13 :NFIIKNG 1ow1A 3512 :LLALKND Number of specific fragments extracted= 2 number of extra gaps= 1 total=81786 # 1zy9A.11.133 read from T0547.t06.many.frag # found chain 1zy9A in template set Warning: unaligning (T0547)N13 (1zy9A)F124 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :NE 1zy9A 122 :HP T0547 14 :FIIKNG 1zy9A 125 :FAVEDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=81788 # 1rzhH.11.192 read from T0547.t06.many.frag # found chain 1rzhH in training set T0547 11 :NENFIIKNG 1rzhH 193 :MQMVKVQSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=81789 # 1p1mA.11.17 read from T0547.t06.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)E12 (1p1mA)G19 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1p1mA)A20 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :N 1p1mA 18 :W T0547 14 :FIIKNG 1p1mA 21 :VEIENG Number of specific fragments extracted= 2 number of extra gaps= 1 total=81791 # 1dqgA.11.85 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)E12 (1dqgA)T87 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1dqgA)G93 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1dqgA)T94 because E (beta_S) conformation "forbidden" or filtered. T0547 11 :N 1dqgA 86 :D T0547 13 :NFIIK 1dqgA 88 :LFGIK Number of specific fragments extracted= 2 number of extra gaps= 2 total=81793 # 1eu1A.11.15 read from T0547.t06.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)E12 (1eu1A)F17 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :N 1eu1A 16 :V T0547 13 :NFIIKNG 1eu1A 18 :KARVENG Number of specific fragments extracted= 2 number of extra gaps= 1 total=81795 # 1svpA.11.87 read from T0547.t06.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)N13 (1svpA)A195 because P (beta_P) conformation "forbidden" or filtered. T0547 11 :NE 1svpA 193 :HG T0547 14 :FIIKNG 1svpA 196 :VQYSGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=81797 # 1qmgA.11.23 read from T0547.t06.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)E12 (1qmgA)E96 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1qmgA)H103 because E (beta_S) conformation "forbidden" or filtered. T0547 11 :N 1qmgA 95 :K T0547 13 :NFIIKN 1qmgA 97 :KVTLSG Number of specific fragments extracted= 2 number of extra gaps= 2 total=81799 # 2f6eA.11.81 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)K17 (2f6eA)N89 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (2f6eA)N91 because P (beta_P) conformation "forbidden" or filtered. T0547 11 :NENFII 2f6eA 83 :TGWQTI T0547 18 :N 2f6eA 90 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=81801 # 1vd6A.11.40 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 11 :NENFIIKNG 1vd6A 41 :LDVWPTRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=81802 # 1ssxA.11.5 read from T0547.t06.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)K17 (1ssxA)N36 because L (left) conformation "forbidden" or filtered. T0547 11 :NENFII 1ssxA 19 :GIEYSI T0547 18 :NG 1ssxA 38 :NA Number of specific fragments extracted= 2 number of extra gaps= 1 total=81804 # 1eexA.11.37 read from T0547.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)N13 (1eexA)S40 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :NE 1eexA 38 :KP T0547 14 :FIIKNG 1eexA 41 :IKIVNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=81806 # 1mgtA.11.3 read from T0547.t06.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)N11 (1mgtA)V4 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1mgtA)G10 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1mgtA)R12 because P (beta_P) conformation "forbidden" or filtered. T0547 12 :ENFII 1mgtA 5 :EKFRV T0547 18 :N 1mgtA 11 :E Number of specific fragments extracted= 2 number of extra gaps= 3 total=81808 # 1mj5A.11.10 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)N18 (1mj5A)G18 because T (delta_L) conformation "forbidden" or filtered. T0547 11 :NENFIIK 1mj5A 11 :KKFIEIK T0547 19 :G 1mj5A 19 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=81810 # 2cyjA.11.7 read from T0547.t06.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)K17 (2cyjA)D14 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (2cyjA)G15 because T (delta_L) conformation "forbidden" or filtered. T0547 11 :NENFII 2cyjA 8 :FGLVKI T0547 19 :G 2cyjA 16 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=81812 # 1jb0D.11.43 read from T0547.t06.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)N11 (1jb0D)A44 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E12 (1jb0D)G45 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1jb0D)R50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1jb0D)E51 because P (beta_P) conformation "forbidden" or filtered. T0547 13 :NFII 1jb0D 46 :AAVM T0547 19 :G 1jb0D 52 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=81814 # 1g3p.11.137 read from T0547.t06.many.frag # found chain 1g3p in training set Warning: unaligning (T0547)N18 (1g3p)Q145 because L (left) conformation "forbidden" or filtered. T0547 11 :NENFIIK 1g3p 138 :NNRFRNR T0547 19 :G 1g3p 146 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=81816 # 1j2zA.11.177 read from T0547.t06.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)N13 (1j2zA)Y180 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1j2zA)E184 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :NE 1j2zA 178 :PP T0547 14 :FII 1j2zA 181 :CTV T0547 18 :NG 1j2zA 185 :GN Number of specific fragments extracted= 3 number of extra gaps= 2 total=81819 # 1vq2A.11.23 read from T0547.t06.many.frag # found chain 1vq2A in template set T0547 11 :NENFIIKNG 1vq2A 24 :VGAVIEKNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=81820 # 1vcc.11.0 read from T0547.t06.many.frag # found chain 1vcc in training set Warning: unaligning (T0547)N11 because first residue in template chain is (1vcc)M1 Warning: unaligning (T0547)N13 (1vcc)A3 because P (beta_P) conformation "forbidden" or filtered. T0547 12 :E 1vcc 2 :R T0547 14 :FIIKNG 1vcc 4 :LFYKDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=81822 # 1u9yA.11.26 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)F14 (1u9yA)K30 because Y (epsilon') conformation "forbidden" or filtered. T0547 11 :NEN 1u9yA 27 :VEY T0547 15 :IIKNG 1u9yA 31 :RFPDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=81824 # 1h4gA.11.111 read from T0547.t06.many.frag # found chain 1h4gA in training set Warning: unaligning (T0547)K17 (1h4gA)D118 because L (left) conformation "forbidden" or filtered. T0547 11 :NENFII 1h4gA 112 :KGTITV T0547 18 :NG 1h4gA 119 :GG Number of specific fragments extracted= 2 number of extra gaps= 1 total=81826 # 1o12A.11.28 read from T0547.t06.many.frag # found chain 1o12A in template set T0547 11 :NENFIIKNG 1o12A 17 :TGDVEIEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=81827 # 1rwrA.11.125 read from T0547.t06.many.frag # found chain 1rwrA in training set Warning: unaligning (T0547)K17 (1rwrA)N132 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1rwrA)G134 because H (helix) conformation "forbidden" or filtered. T0547 11 :NENFII 1rwrA 126 :TGRPSV T0547 18 :N 1rwrA 133 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=81829 # 1n8kA.11.126 read from T0547.t06.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)E12 (1n8kA)S128 because E (beta_S) conformation "forbidden" or filtered. T0547 11 :N 1n8kA 127 :T T0547 13 :NFIIKNG 1n8kA 129 :RFTCRGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=81831 # 3vub.11.50 read from T0547.t06.many.frag # found chain 3vub in training set Warning: unaligning (T0547)K17 (3vub)G57 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (3vub)E59 because E (beta_S) conformation "forbidden" or filtered. T0547 11 :NENFII 3vub 51 :YPVVHI T0547 18 :N 3vub 58 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=81833 # 1nu0A.11.29 read from T0547.t06.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)N18 (1nu0A)D37 because L (left) conformation "forbidden" or filtered. T0547 11 :NENFIIK 1nu0A 30 :LPAIKAQ T0547 19 :G 1nu0A 38 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=81835 # 1onwA.11.24 read from T0547.t06.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)N13 (1onwA)D27 because P (beta_P) conformation "forbidden" or filtered. T0547 11 :NE 1onwA 25 :IC T0547 14 :FIIKNG 1onwA 28 :VLVANG Number of specific fragments extracted= 2 number of extra gaps= 1 total=81837 # 2esnA.11.53 read from T0547.t06.many.frag # found chain 2esnA in template set Warning: unaligning (T0547)N13 (2esnA)L54 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (2esnA)N60 because G (3-10) conformation "forbidden" or filtered. T0547 11 :NE 2esnA 52 :DE T0547 14 :FIIKN 2esnA 55 :FLRQG Number of specific fragments extracted= 2 number of extra gaps= 2 total=81839 # 1yzyA.12.117 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)N18 (1yzyA)N123 because L (left) conformation "forbidden" or filtered. T0547 12 :ENFIIK 1yzyA 117 :NGRTIF T0547 19 :GK 1yzyA 124 :GY Number of specific fragments extracted= 2 number of extra gaps= 1 total=81841 # 1zy9A.12.134 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 12 :ENFIIKNGK 1zy9A 123 :PFFAVEDGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=81842 # 1p1mA.12.18 read from T0547.t06.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)E12 (1p1mA)G19 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :NFIIKNGK 1p1mA 20 :AVEIENGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=81843 # 1ow1A.12.41 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)E12 (1ow1A)G3511 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1ow1A)K3516 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1ow1A)N3517 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1ow1A)D3518 because E (beta_S) conformation "forbidden" or filtered. T0547 13 :NFII 1ow1A 3512 :LLAL T0547 20 :K 1ow1A 3519 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=81845 # 1eexA.12.38 read from T0547.t06.many.frag # found chain 1eexA in training set T0547 12 :ENFIIKNGK 1eexA 39 :PSIKIVNGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=81846 # 1eu1A.12.16 read from T0547.t06.many.frag # found chain 1eu1A in training set T0547 12 :ENFIIKNGK 1eu1A 17 :FKARVENGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=81847 # 1jb0D.12.44 read from T0547.t06.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)E12 (1jb0D)G45 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1jb0D)G52 because S (epsilon) conformation "forbidden" or filtered. T0547 13 :NFIIKN 1jb0D 46 :AAVMRE T0547 20 :K 1jb0D 53 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=81849 # 1vd6A.12.41 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)N13 (1vd6A)V43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1vd6A)V50 because P (beta_P) conformation "forbidden" or filtered. T0547 12 :E 1vd6A 42 :D T0547 14 :FIIKNG 1vd6A 44 :WPTRDG Number of specific fragments extracted= 2 number of extra gaps= 2 total=81851 # 1uz5A.12.117 read from T0547.t06.many.frag # found chain 1uz5A in template set Warning: unaligning (T0547)K20 (1uz5A)E126 because Y (epsilon') conformation "forbidden" or filtered. T0547 12 :ENFIIKNG 1uz5A 118 :EDVERVNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=81852 # 1mj5A.12.11 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G19 (1mj5A)R19 because E (beta_S) conformation "forbidden" or filtered. T0547 12 :ENFIIKN 1mj5A 12 :KFIEIKG T0547 20 :K 1mj5A 20 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=81854 # 1qmgA.12.24 read from T0547.t06.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)E12 (1qmgA)E96 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1qmgA)S101 because L (left) conformation "forbidden" or filtered. T0547 13 :NFII 1qmgA 97 :KVTL T0547 18 :NGK 1qmgA 102 :GHD Number of specific fragments extracted= 2 number of extra gaps= 2 total=81856 # 1dqgA.12.86 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)I15 (1dqgA)G90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1dqgA)G93 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1dqgA)T94 because E (beta_S) conformation "forbidden" or filtered. T0547 12 :ENF 1dqgA 87 :TLF T0547 16 :IK 1dqgA 91 :IK T0547 20 :K 1dqgA 95 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=81859 # 2f6eA.12.82 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)N13 (2f6eA)W85 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2f6eA)N89 because L (left) conformation "forbidden" or filtered. T0547 12 :E 2f6eA 84 :G T0547 14 :FII 2f6eA 86 :QTI T0547 18 :NGK 2f6eA 90 :GNM Number of specific fragments extracted= 3 number of extra gaps= 2 total=81862 # 1svpA.12.88 read from T0547.t06.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)K17 (1svpA)S199 because E (beta_S) conformation "forbidden" or filtered. T0547 12 :ENFII 1svpA 194 :GAVQY T0547 18 :NGK 1svpA 200 :GGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=81864 # 1vq2A.12.24 read from T0547.t06.many.frag # found chain 1vq2A in template set T0547 12 :ENFIIKNGK 1vq2A 25 :GAVIEKNGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=81865 # 1mgtA.12.4 read from T0547.t06.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)K17 (1mgtA)G10 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1mgtA)R12 because P (beta_P) conformation "forbidden" or filtered. T0547 12 :ENFII 1mgtA 5 :EKFRV T0547 18 :N 1mgtA 11 :E T0547 20 :K 1mgtA 13 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=81868 # 1rzhH.12.193 read from T0547.t06.many.frag # found chain 1rzhH in training set T0547 12 :ENFIIKNGK 1rzhH 194 :QMVKVQSNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=81869 # 1vcc.12.1 read from T0547.t06.many.frag # found chain 1vcc in training set Warning: unaligning (T0547)N18 (1vcc)D8 because L (left) conformation "forbidden" or filtered. T0547 12 :ENFIIK 1vcc 2 :RALFYK T0547 19 :GK 1vcc 9 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=81871 # 1j2zA.12.178 read from T0547.t06.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)N13 (1j2zA)Y180 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1j2zA)E184 because Y (epsilon') conformation "forbidden" or filtered. T0547 12 :E 1j2zA 179 :P T0547 14 :FII 1j2zA 181 :CTV T0547 18 :NGK 1j2zA 185 :GNR Number of specific fragments extracted= 3 number of extra gaps= 2 total=81874 # 1o12A.12.29 read from T0547.t06.many.frag # found chain 1o12A in template set Warning: unaligning (T0547)E12 (1o12A)G18 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1o12A)E23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1o12A)E24 because L (left) conformation "forbidden" or filtered. T0547 13 :NFII 1o12A 19 :DVEI T0547 19 :GK 1o12A 25 :GK Number of specific fragments extracted= 2 number of extra gaps= 2 total=81876 # 2cyjA.12.8 read from T0547.t06.many.frag # found chain 2cyjA in training set Warning: unaligning (T0547)E12 (2cyjA)G9 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (2cyjA)D14 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (2cyjA)G15 because T (delta_L) conformation "forbidden" or filtered. T0547 13 :NFII 2cyjA 10 :LVKI T0547 19 :GK 2cyjA 16 :KE Number of specific fragments extracted= 2 number of extra gaps= 2 total=81878 # 2esnA.12.54 read from T0547.t06.many.frag # found chain 2esnA in template set Warning: unaligning (T0547)N13 (2esnA)L54 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (2esnA)G59 because S (epsilon) conformation "forbidden" or filtered. T0547 12 :E 2esnA 53 :E T0547 14 :FIIK 2esnA 55 :FLRQ T0547 19 :GK 2esnA 60 :NR Number of specific fragments extracted= 3 number of extra gaps= 2 total=81881 # 1dtdB.12.43 read from T0547.t06.many.frag # found chain 1dtdB in training set Warning: unaligning (T0547)K17 (1dtdB)S54 because S (epsilon) conformation "forbidden" or filtered. T0547 12 :ENFII 1dtdB 49 :EWVPY T0547 18 :NGK 1dtdB 55 :TGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=81883 # 1u9yA.12.27 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 12 :ENFIIKNGK 1u9yA 28 :EYKRFPDNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=81884 # 1ssxA.12.6 read from T0547.t06.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)E12 (1ssxA)I31 because P (beta_P) conformation "forbidden" or filtered. T0547 13 :NFIIKNGK 1ssxA 32 :EYSINNAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=81885 # 1rwrA.12.126 read from T0547.t06.many.frag # found chain 1rwrA in training set Warning: unaligning (T0547)E12 (1rwrA)G127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N13 (1rwrA)R128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1rwrA)G133 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1rwrA)G134 because H (helix) conformation "forbidden" or filtered. T0547 14 :FIIK 1rwrA 129 :PSVN T0547 20 :K 1rwrA 135 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=81887 # 1t77A.12.19 read from T0547.t06.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)E12 (1t77A)G2095 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1t77A)S2101 because G (3-10) conformation "forbidden" or filtered. T0547 13 :NFIIK 1t77A 2096 :TLSVT T0547 19 :GK 1t77A 2102 :SE Number of specific fragments extracted= 2 number of extra gaps= 2 total=81889 # 1rmd.12.34 read from T0547.t06.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)E12 (1rmd)D35 because L (left) conformation "forbidden" or filtered. T0547 13 :NFIIKNGK 1rmd 36 :PVETSCKH Number of specific fragments extracted= 1 number of extra gaps= 1 total=81890 # 1hqsA.12.4 read from T0547.t06.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)E12 (1hqsA)E5 because E (beta_S) conformation "forbidden" or filtered. T0547 13 :NFIIKNGK 1hqsA 6 :KITVSNGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=81891 # 1onwA.12.25 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 12 :ENFIIKNGK 1onwA 26 :CDVLVANGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=81892 # 1yzyA.13.118 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)N13 (1yzyA)G118 because L (left) conformation "forbidden" or filtered. T0547 14 :FIIKNGKV 1yzyA 119 :RTIFNGYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=81893 # 1zy9A.13.135 read from T0547.t06.many.frag # found chain 1zy9A in template set Warning: unaligning (T0547)N13 (1zy9A)F124 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FIIKNGKV 1zy9A 125 :FAVEDGEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=81894 # 1p1mA.13.19 read from T0547.t06.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)N13 (1p1mA)A20 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FIIKNGKV 1p1mA 21 :VEIENGTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=81895 # 1eu1A.13.17 read from T0547.t06.many.frag # found chain 1eu1A in training set T0547 13 :NFIIKNGKV 1eu1A 18 :KARVENGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=81896 # 1eexA.13.39 read from T0547.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)N13 (1eexA)S40 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FIIKNGKV 1eexA 41 :IKIVNGAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=81897 # 1o12A.13.30 read from T0547.t06.many.frag # found chain 1o12A in template set Warning: unaligning (T0547)N13 (1o12A)D19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1o12A)E23 because E (beta_S) conformation "forbidden" or filtered. T0547 14 :FII 1o12A 20 :VEI T0547 18 :NGKV 1o12A 24 :EGKI Number of specific fragments extracted= 2 number of extra gaps= 2 total=81899 # 1t77A.13.20 read from T0547.t06.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)G19 (1t77A)S2102 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1t77A)E2103 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :NFIIKN 1t77A 2096 :TLSVTS T0547 21 :V 1t77A 2104 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=81901 # 1jb0D.13.45 read from T0547.t06.many.frag # found chain 1jb0D in template set T0547 13 :NFIIKNGKV 1jb0D 46 :AAVMREGEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=81902 # 1ow1A.13.42 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)K17 (1ow1A)K3516 because S (epsilon) conformation "forbidden" or filtered. T0547 13 :NFII 1ow1A 3512 :LLAL T0547 18 :NGKV 1ow1A 3517 :NDTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=81904 # 1yq2A.13.312 read from T0547.t06.many.frag # found chain 1yq2A in template set T0547 13 :NFIIKNGKV 1yq2A 312 :TVRIVGDQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=81905 # 1vd6A.13.42 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)N18 (1vd6A)D48 because G (3-10) conformation "forbidden" or filtered. T0547 13 :NFIIK 1vd6A 43 :VWPTR T0547 19 :GKV 1vd6A 49 :GVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=81907 # 1dtdB.13.44 read from T0547.t06.many.frag # found chain 1dtdB in training set Warning: unaligning (T0547)K17 (1dtdB)S54 because S (epsilon) conformation "forbidden" or filtered. T0547 13 :NFII 1dtdB 50 :WVPY T0547 18 :NGKV 1dtdB 55 :TGQC Number of specific fragments extracted= 2 number of extra gaps= 1 total=81909 # 1uz5A.13.118 read from T0547.t06.many.frag # found chain 1uz5A in template set Warning: unaligning (T0547)N18 (1uz5A)N124 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1uz5A)E126 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :NFIIK 1uz5A 119 :DVERV T0547 19 :G 1uz5A 125 :G T0547 21 :V 1uz5A 127 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=81912 # 1onwA.13.26 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 13 :NFIIKNGKV 1onwA 27 :DVLVANGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=81913 # 1mj5A.13.12 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)N13 (1mj5A)F13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K17 (1mj5A)K17 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1mj5A)G18 because T (delta_L) conformation "forbidden" or filtered. T0547 14 :FII 1mj5A 14 :IEI T0547 19 :GKV 1mj5A 19 :RRM Number of specific fragments extracted= 2 number of extra gaps= 2 total=81915 # 1hqsA.13.5 read from T0547.t06.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)K17 (1hqsA)S10 because D (zeta) conformation "forbidden" or filtered. T0547 13 :NFII 1hqsA 6 :KITV T0547 18 :NGKV 1hqsA 11 :NGVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=81917 # 1vs0A.13.38 read from T0547.t06.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)K17 (1vs0A)D492 because N (gamma') conformation "forbidden" or filtered. T0547 13 :NFII 1vs0A 488 :LVEA T0547 18 :NGKV 1vs0A 493 :HGAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81919 # 2esnA.13.55 read from T0547.t06.many.frag # found chain 2esnA in template set Warning: unaligning (T0547)G19 (2esnA)N60 because G (3-10) conformation "forbidden" or filtered. T0547 13 :NFIIKN 2esnA 54 :LFLRQG T0547 20 :KV 2esnA 61 :RM Number of specific fragments extracted= 2 number of extra gaps= 1 total=81921 # 1vcc.13.2 read from T0547.t06.many.frag # found chain 1vcc in training set T0547 13 :NFIIKNGKV 1vcc 3 :ALFYKDGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=81922 # 1b25A.13.119 read from T0547.t06.many.frag # found chain 1b25A in template set Warning: unaligning (T0547)K17 (1b25A)E124 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1b25A)D125 because S (epsilon) conformation "forbidden" or filtered. T0547 13 :NFII 1b25A 120 :YIYI T0547 19 :GKV 1b25A 126 :DNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81924 # 1dqgA.13.87 read from T0547.t06.many.frag # found chain 1dqgA in training set Warning: unaligning (T0547)K17 (1dqgA)K92 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1dqgA)T94 because E (beta_S) conformation "forbidden" or filtered. T0547 13 :NFII 1dqgA 88 :LFGI T0547 18 :N 1dqgA 93 :G T0547 20 :KV 1dqgA 95 :EL Number of specific fragments extracted= 3 number of extra gaps= 2 total=81927 # 1rwrA.13.127 read from T0547.t06.many.frag # found chain 1rwrA in training set T0547 13 :NFIIKNGKV 1rwrA 128 :RPSVNGGRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=81928 # 1vq2A.13.25 read from T0547.t06.many.frag # found chain 1vq2A in template set T0547 13 :NFIIKNGKV 1vq2A 26 :AVIEKNGRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=81929 # 1svpA.13.89 read from T0547.t06.many.frag # found chain 1svpA in template set T0547 13 :NFIIKNGKV 1svpA 195 :AVQYSGGRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=81930 # 1r6jA.13.18 read from T0547.t06.many.frag # found chain 1r6jA in training set T0547 13 :NFIIKNGKV 1r6jA 210 :GFIFKNGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=81931 # 1j2zA.13.179 read from T0547.t06.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)K17 (1j2zA)E184 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :NFII 1j2zA 180 :YCTV T0547 18 :NGKV 1j2zA 185 :GNRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=81933 # 2f6eA.13.83 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)K17 (2f6eA)N89 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (2f6eA)N91 because P (beta_P) conformation "forbidden" or filtered. T0547 13 :NFII 2f6eA 85 :WQTI T0547 18 :N 2f6eA 90 :G T0547 20 :KV 2f6eA 92 :MY Number of specific fragments extracted= 3 number of extra gaps= 2 total=81936 # 1u9yA.13.28 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)F14 (1u9yA)K30 because Y (epsilon') conformation "forbidden" or filtered. T0547 13 :N 1u9yA 29 :Y T0547 15 :IIKNGKV 1u9yA 31 :RFPDNEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=81938 # 1qmgA.13.25 read from T0547.t06.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)K17 (1qmgA)S101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1qmgA)G102 because T (delta_L) conformation "forbidden" or filtered. T0547 13 :NFII 1qmgA 97 :KVTL T0547 19 :GKV 1qmgA 103 :HDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=81940 # 1rzhH.13.194 read from T0547.t06.many.frag # found chain 1rzhH in training set Warning: unaligning (T0547)N13 (1rzhH)M195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1rzhH)N201 because G (3-10) conformation "forbidden" or filtered. T0547 14 :FIIKN 1rzhH 196 :VKVQS T0547 20 :KV 1rzhH 202 :RV Number of specific fragments extracted= 2 number of extra gaps= 2 total=81942 # 1yzyA.14.119 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)K20 (1yzyA)Y125 because P (beta_P) conformation "forbidden" or filtered. T0547 14 :FIIKNG 1yzyA 119 :RTIFNG T0547 21 :VC 1yzyA 126 :LF Number of specific fragments extracted= 2 number of extra gaps= 1 total=81944 # 1p1mA.14.20 read from T0547.t06.many.frag # found chain 1p1mA in training set T0547 14 :FIIKNGKVC 1p1mA 21 :VEIENGTIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=81945 # 1zy9A.14.136 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 14 :FIIKNGKVC 1zy9A 125 :FAVEDGELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81946 # 1eexA.14.40 read from T0547.t06.many.frag # found chain 1eexA in training set T0547 14 :FIIKNGKVC 1eexA 41 :IKIVNGAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=81947 # 1t77A.14.21 read from T0547.t06.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)K17 (1t77A)T2100 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1t77A)E2103 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FII 1t77A 2097 :LSV T0547 18 :NG 1t77A 2101 :SS T0547 21 :VC 1t77A 2104 :LY Number of specific fragments extracted= 3 number of extra gaps= 2 total=81950 # 1yq2A.14.313 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)K17 (1yq2A)V316 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1yq2A)G317 because S (epsilon) conformation "forbidden" or filtered. T0547 14 :FII 1yq2A 313 :VRI T0547 19 :GKVC 1yq2A 318 :DQFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=81952 # 1eu1A.14.18 read from T0547.t06.many.frag # found chain 1eu1A in training set T0547 14 :FIIKNGKVC 1eu1A 19 :ARVENGRAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81953 # 1o12A.14.31 read from T0547.t06.many.frag # found chain 1o12A in template set T0547 14 :FIIKNGKVC 1o12A 20 :VEIEEGKIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81954 # 1vs0A.14.39 read from T0547.t06.many.frag # found chain 1vs0A in template set T0547 14 :FIIKNGKVC 1vs0A 489 :VEADHGAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=81955 # 1b25A.14.120 read from T0547.t06.many.frag # found chain 1b25A in template set Warning: unaligning (T0547)G19 (1b25A)D126 because G (3-10) conformation "forbidden" or filtered. T0547 14 :FIIKN 1b25A 121 :IYIED T0547 20 :KVC 1b25A 127 :NVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=81957 # 1jb0D.14.46 read from T0547.t06.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)K17 (1jb0D)R50 because P (beta_P) conformation "forbidden" or filtered. T0547 14 :FII 1jb0D 47 :AVM T0547 18 :NGKVC 1jb0D 51 :EGENL Number of specific fragments extracted= 2 number of extra gaps= 1 total=81959 # 1dtdB.14.45 read from T0547.t06.many.frag # found chain 1dtdB in training set T0547 14 :FIIKNGKVC 1dtdB 51 :VPYSTGQCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=81960 # 1hqsA.14.6 read from T0547.t06.many.frag # found chain 1hqsA in training set T0547 14 :FIIKNGKVC 1hqsA 7 :ITVSNGVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=81961 # 1uz5A.14.119 read from T0547.t06.many.frag # found chain 1uz5A in template set Warning: unaligning (T0547)K20 (1uz5A)E126 because Y (epsilon') conformation "forbidden" or filtered. T0547 14 :FIIKNG 1uz5A 120 :VERVNG T0547 21 :VC 1uz5A 127 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=81963 # 2esnA.14.56 read from T0547.t06.many.frag # found chain 2esnA in template set Warning: unaligning (T0547)N18 (2esnA)G59 because S (epsilon) conformation "forbidden" or filtered. T0547 14 :FIIK 2esnA 55 :FLRQ T0547 19 :GKVC 2esnA 60 :NRMQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=81965 # 1vd6A.14.43 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)K20 (1vd6A)V50 because P (beta_P) conformation "forbidden" or filtered. T0547 14 :FIIKNG 1vd6A 44 :WPTRDG T0547 21 :VC 1vd6A 51 :FA Number of specific fragments extracted= 2 number of extra gaps= 1 total=81967 # 1rwrA.14.128 read from T0547.t06.many.frag # found chain 1rwrA in training set T0547 14 :FIIKNGKVC 1rwrA 129 :PSVNGGRIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=81968 # 1r6jA.14.19 read from T0547.t06.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)N18 (1r6jA)N215 because L (left) conformation "forbidden" or filtered. T0547 14 :FIIK 1r6jA 211 :FIFK T0547 19 :GKVC 1r6jA 216 :GKIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=81970 # 1onwA.14.27 read from T0547.t06.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)N18 (1onwA)N32 because L (left) conformation "forbidden" or filtered. T0547 14 :FIIK 1onwA 28 :VLVA T0547 19 :GKVC 1onwA 33 :GKII Number of specific fragments extracted= 2 number of extra gaps= 1 total=81972 # 1u9yA.14.29 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 14 :FIIKNGKVC 1u9yA 30 :KRFPDNEIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=81973 # 1mj5A.14.13 read from T0547.t06.many.frag # found chain 1mj5A in training set T0547 14 :FIIKNGKVC 1mj5A 14 :IEIKGRRMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=81974 # 1vq2A.14.26 read from T0547.t06.many.frag # found chain 1vq2A in template set T0547 14 :FIIKNGKVC 1vq2A 27 :VIEKNGRII Number of specific fragments extracted= 1 number of extra gaps= 0 total=81975 # 2c0hA.14.4 read from T0547.t06.many.frag # found chain 2c0hA in training set Warning: unaligning (T0547)K17 (2c0hA)S22 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (2c0hA)T24 because G (3-10) conformation "forbidden" or filtered. T0547 14 :FII 2c0hA 19 :LSV T0547 18 :N 2c0hA 23 :G T0547 20 :KVC 2c0hA 25 :NLN Number of specific fragments extracted= 3 number of extra gaps= 2 total=81978 # 1svpA.14.90 read from T0547.t06.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)N18 (1svpA)G200 because L (left) conformation "forbidden" or filtered. T0547 14 :FIIK 1svpA 196 :VQYS T0547 19 :GKVC 1svpA 201 :GRFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=81980 # 1ra0A.14.25 read from T0547.t06.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)K17 (1ra0A)Q25 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1ra0A)D26 because L (left) conformation "forbidden" or filtered. T0547 14 :FII 1ra0A 22 :IHL T0547 19 :GKVC 1ra0A 27 :GKIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=81982 # 1vcc.14.3 read from T0547.t06.many.frag # found chain 1vcc in training set T0547 14 :FIIKNGKVC 1vcc 4 :LFYKDGKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=81983 # 1rmd.14.36 read from T0547.t06.many.frag # found chain 1rmd in template set T0547 14 :FIIKNGKVC 1rmd 37 :VETSCKHLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=81984 # 1j2zA.14.180 read from T0547.t06.many.frag # found chain 1j2zA in template set Warning: unaligning (T0547)K17 (1j2zA)E184 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (1j2zA)G185 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1j2zA)R187 because N (gamma') conformation "forbidden" or filtered. T0547 14 :FII 1j2zA 181 :CTV T0547 19 :G 1j2zA 186 :N T0547 21 :VC 1j2zA 188 :AF Number of specific fragments extracted= 3 number of extra gaps= 2 total=81987 # 1wn5A.14.32 read from T0547.t06.many.frag # found chain 1wn5A in training set T0547 14 :FIIKNGKVC 1wn5A 33 :ALSSDGRIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=81988 # 2f6eA.14.84 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)K17 (2f6eA)N89 because L (left) conformation "forbidden" or filtered. T0547 14 :FII 2f6eA 86 :QTI T0547 18 :NGKVC 2f6eA 90 :GNMYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=81990 # 1yzyA.15.120 read from T0547.t06.many.frag # found chain 1yzyA in template set T0547 15 :IIKNGKVCI 1yzyA 120 :TIFNGYLFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=81991 # 1t77A.15.22 read from T0547.t06.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)G19 (1t77A)S2102 because G (3-10) conformation "forbidden" or filtered. T0547 15 :IIKN 1t77A 2098 :SVTS T0547 20 :KVCI 1t77A 2103 :ELYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=81993 # 1zy9A.15.137 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 15 :IIKNGKVCI 1zy9A 126 :AVEDGELVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=81994 # 1yq2A.15.314 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)G19 (1yq2A)D318 because G (3-10) conformation "forbidden" or filtered. T0547 15 :IIKN 1yq2A 314 :RIVG T0547 20 :KVCI 1yq2A 319 :QFLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=81996 # 1p1mA.15.21 read from T0547.t06.many.frag # found chain 1p1mA in training set T0547 15 :IIKNGKVCI 1p1mA 22 :EIENGTIKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=81997 # 1eexA.15.41 read from T0547.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)N18 (1eexA)N45 because L (left) conformation "forbidden" or filtered. T0547 15 :IIK 1eexA 42 :KIV T0547 19 :GKVCI 1eexA 46 :GAVTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=81999 # 1dtdB.15.46 read from T0547.t06.many.frag # found chain 1dtdB in training set T0547 15 :IIKNGKVCI 1dtdB 52 :PYSTGQCRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=82000 # 1vs0A.15.40 read from T0547.t06.many.frag # found chain 1vs0A in template set T0547 15 :IIKNGKVCI 1vs0A 490 :EADHGAVRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82001 # 1b25A.15.121 read from T0547.t06.many.frag # found chain 1b25A in template set Warning: unaligning (T0547)N18 (1b25A)D125 because S (epsilon) conformation "forbidden" or filtered. T0547 15 :IIK 1b25A 122 :YIE T0547 19 :GKVCI 1b25A 126 :DNVSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=82003 # 1uz5A.15.120 read from T0547.t06.many.frag # found chain 1uz5A in template set Warning: unaligning (T0547)K20 (1uz5A)E126 because Y (epsilon') conformation "forbidden" or filtered. T0547 15 :IIKNG 1uz5A 121 :ERVNG T0547 21 :VCI 1uz5A 127 :ILI Number of specific fragments extracted= 2 number of extra gaps= 1 total=82005 # 1u9yA.15.30 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 15 :IIKNGKVCI 1u9yA 31 :RFPDNEIYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82006 # 2esnA.15.57 read from T0547.t06.many.frag # found chain 2esnA in template set Warning: unaligning (T0547)N18 (2esnA)G59 because S (epsilon) conformation "forbidden" or filtered. T0547 15 :IIK 2esnA 56 :LRQ T0547 19 :GKVCI 2esnA 60 :NRMQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=82008 # 1hqsA.15.7 read from T0547.t06.many.frag # found chain 1hqsA in training set T0547 15 :IIKNGKVCI 1hqsA 8 :TVSNGVLNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82009 # 1jb0D.15.47 read from T0547.t06.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)N18 (1jb0D)E51 because P (beta_P) conformation "forbidden" or filtered. T0547 15 :IIK 1jb0D 48 :VMR T0547 19 :GKVCI 1jb0D 52 :GENLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=82011 # 1rwrA.15.129 read from T0547.t06.many.frag # found chain 1rwrA in training set T0547 15 :IIKNGKVCI 1rwrA 130 :SVNGGRIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82012 # 1vd6A.15.44 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 15 :IIKNGKVCI 1vd6A 45 :PTRDGVFAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82013 # 1eu1A.15.19 read from T0547.t06.many.frag # found chain 1eu1A in training set T0547 15 :IIKNGKVCI 1eu1A 20 :RVENGRAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82014 # 1o12A.15.32 read from T0547.t06.many.frag # found chain 1o12A in template set Warning: unaligning (T0547)N18 (1o12A)E24 because L (left) conformation "forbidden" or filtered. T0547 15 :IIK 1o12A 21 :EIE T0547 19 :GKVCI 1o12A 25 :GKIVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=82016 # 2c0hA.15.5 read from T0547.t06.many.frag # found chain 2c0hA in training set Warning: unaligning (T0547)K17 (2c0hA)S22 because D (zeta) conformation "forbidden" or filtered. T0547 15 :II 2c0hA 20 :SV T0547 18 :NGKVCI 2c0hA 23 :GTNLNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=82018 # 1mj5A.15.14 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)N18 (1mj5A)G18 because T (delta_L) conformation "forbidden" or filtered. T0547 15 :IIK 1mj5A 15 :EIK T0547 19 :GKVCI 1mj5A 19 :RRMAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=82020 # 1r6jA.15.20 read from T0547.t06.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)N18 (1r6jA)N215 because L (left) conformation "forbidden" or filtered. T0547 15 :IIK 1r6jA 212 :IFK T0547 19 :GKVCI 1r6jA 216 :GKITS Number of specific fragments extracted= 2 number of extra gaps= 1 total=82022 # 1rmd.15.37 read from T0547.t06.many.frag # found chain 1rmd in template set T0547 15 :IIKNGKVCI 1rmd 38 :ETSCKHLFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=82023 # 1vq2A.15.27 read from T0547.t06.many.frag # found chain 1vq2A in template set T0547 15 :IIKNGKVCI 1vq2A 28 :IEKNGRIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=82024 # 1onwA.15.28 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 15 :IIKNGKVCI 1onwA 29 :LVANGKIIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82025 # 1wn5A.15.33 read from T0547.t06.many.frag # found chain 1wn5A in training set Warning: unaligning (T0547)K20 (1wn5A)R39 because P (beta_P) conformation "forbidden" or filtered. T0547 15 :IIKNG 1wn5A 34 :LSSDG T0547 21 :VCI 1wn5A 40 :IFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=82027 # 1a41.15.73 read from T0547.t06.many.frag # found chain 1a41 in template set Warning: unaligning (T0547)G19 (1a41)D158 because G (3-10) conformation "forbidden" or filtered. T0547 15 :IIKN 1a41 154 :EISP T0547 20 :KVCI 1a41 159 :EIVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=82029 # 1bupA.15.19 read from T0547.t06.many.frag # found chain 1bupA in training set T0547 15 :IIKNGKVCI 1bupA 20 :VFQHGKVEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=82030 # 1tvxA.15.43 read from T0547.t06.many.frag # found chain 1tvxA in training set Warning: unaligning (T0547)K20 (1tvxA)R64 because P (beta_P) conformation "forbidden" or filtered. T0547 15 :IIKNG 1tvxA 59 :TLKDG T0547 21 :VCI 1tvxA 65 :KIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=82032 # 1qwyA.15.27 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)K20 (1qwyA)D58 because P (beta_P) conformation "forbidden" or filtered. T0547 15 :IIKNG 1qwyA 53 :IDSNG T0547 21 :VCI 1qwyA 59 :YHH Number of specific fragments extracted= 2 number of extra gaps= 1 total=82034 # 2f6eA.15.85 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)K20 (2f6eA)M92 because P (beta_P) conformation "forbidden" or filtered. T0547 15 :IIKNG 2f6eA 87 :TINGN T0547 21 :VCI 2f6eA 93 :YYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=82036 # 1u9yA.16.31 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 16 :IKNGKVCIN 1u9yA 32 :FPDNEIYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82037 # 1vs0A.16.41 read from T0547.t06.many.frag # found chain 1vs0A in template set T0547 16 :IKNGKVCIN 1vs0A 491 :ADHGAVRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82038 # 1t77A.16.23 read from T0547.t06.many.frag # found chain 1t77A in template set T0547 16 :IKNGKVCIN 1t77A 2099 :VTSSELYFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82039 # 1b25A.16.122 read from T0547.t06.many.frag # found chain 1b25A in template set Warning: unaligning (T0547)N18 (1b25A)D125 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1b25A)D126 because G (3-10) conformation "forbidden" or filtered. T0547 16 :IK 1b25A 123 :IE T0547 20 :KVCIN 1b25A 127 :NVSIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=82041 # 1eexA.16.42 read from T0547.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)N18 (1eexA)N45 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1eexA)L51 because E (beta_S) conformation "forbidden" or filtered. T0547 16 :IK 1eexA 43 :IV T0547 19 :GKVCI 1eexA 46 :GAVTE Number of specific fragments extracted= 2 number of extra gaps= 2 total=82043 # 1jb0D.16.48 read from T0547.t06.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)K20 (1jb0D)E53 because P (beta_P) conformation "forbidden" or filtered. T0547 16 :IKNG 1jb0D 49 :MREG T0547 21 :VCIN 1jb0D 54 :NLVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=82045 # 1uz5A.16.121 read from T0547.t06.many.frag # found chain 1uz5A in template set Warning: unaligning (T0547)K20 (1uz5A)E126 because Y (epsilon') conformation "forbidden" or filtered. T0547 16 :IKNG 1uz5A 122 :RVNG T0547 21 :VCIN 1uz5A 127 :ILIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=82047 # 1vd6A.16.45 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)N24 (1vd6A)R54 because Y (epsilon') conformation "forbidden" or filtered. T0547 16 :IKNGKVCI 1vd6A 46 :TRDGVFAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=82048 # 1zy9A.16.138 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 16 :IKNGKVCIN 1zy9A 127 :VEDGELVAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=82049 # 1p1mA.16.22 read from T0547.t06.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)N18 (1p1mA)N25 because L (left) conformation "forbidden" or filtered. T0547 16 :IK 1p1mA 23 :IE T0547 19 :GKVCIN 1p1mA 26 :GTIKRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=82051 # 1dtdB.16.47 read from T0547.t06.many.frag # found chain 1dtdB in training set Warning: unaligning (T0547)K17 (1dtdB)S54 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1dtdB)T61 because Y (epsilon') conformation "forbidden" or filtered. T0547 16 :I 1dtdB 53 :Y T0547 18 :NGKVCI 1dtdB 55 :TGQCRT Number of specific fragments extracted= 2 number of extra gaps= 2 total=82053 # 1yzyA.16.121 read from T0547.t06.many.frag # found chain 1yzyA in template set T0547 16 :IKNGKVCIN 1yzyA 121 :IFNGYLFVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82054 # 1qwyA.16.28 read from T0547.t06.many.frag # found chain 1qwyA in training set T0547 16 :IKNGKVCIN 1qwyA 54 :DSNGDYHHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=82055 # 2esnA.16.58 read from T0547.t06.many.frag # found chain 2esnA in template set Warning: unaligning (T0547)K17 (2esnA)Q58 because D (zeta) conformation "forbidden" or filtered. T0547 16 :I 2esnA 57 :R T0547 18 :NGKVCIN 2esnA 59 :GNRMQPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=82057 # 1rmd.16.38 read from T0547.t06.many.frag # found chain 1rmd in template set Warning: unaligning (T0547)N18 (1rmd)C41 because G (3-10) conformation "forbidden" or filtered. T0547 16 :IK 1rmd 39 :TS T0547 19 :GKVCIN 1rmd 42 :KHLFCR Number of specific fragments extracted= 2 number of extra gaps= 1 total=82059 # 1rwrA.16.130 read from T0547.t06.many.frag # found chain 1rwrA in training set Warning: unaligning (T0547)K17 (1rwrA)N132 because D (zeta) conformation "forbidden" or filtered. T0547 16 :I 1rwrA 131 :V T0547 18 :NGKVCIN 1rwrA 133 :GGRIGLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=82061 # 1hqsA.16.8 read from T0547.t06.many.frag # found chain 1hqsA in training set T0547 16 :IKNGKVCIN 1hqsA 9 :VSNGVLNVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=82062 # 1tvxA.16.44 read from T0547.t06.many.frag # found chain 1tvxA in training set T0547 16 :IKNGKVCIN 1tvxA 60 :LKDGRKICL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82063 # 1bupA.16.20 read from T0547.t06.many.frag # found chain 1bupA in training set T0547 16 :IKNGKVCIN 1bupA 21 :FQHGKVEII Number of specific fragments extracted= 1 number of extra gaps= 0 total=82064 # 1vkyA.16.97 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 16 :IKNGKVCIN 1vkyA 86 :LEEGIWKCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82065 # 1yq2A.16.315 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)N18 (1yq2A)G317 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1yq2A)D318 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1yq2A)N323 because L (left) conformation "forbidden" or filtered. T0547 16 :IK 1yq2A 315 :IV T0547 20 :KVCI 1yq2A 319 :QFLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=82067 # 1wn5A.16.34 read from T0547.t06.many.frag # found chain 1wn5A in training set Warning: unaligning (T0547)N24 (1wn5A)G43 because Y (epsilon') conformation "forbidden" or filtered. T0547 16 :IKNGKVCI 1wn5A 35 :SSDGRIFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=82068 # 1iqzA.16.27 read from T0547.t06.many.frag # found chain 1iqzA in training set Warning: unaligning (T0547)C22 (1iqzA)Y34 because Y (epsilon') conformation "forbidden" or filtered. T0547 16 :IKNGKV 1iqzA 28 :DEDGIA T0547 23 :IN 1iqzA 35 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=82070 # 1eu1A.16.20 read from T0547.t06.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)N18 (1eu1A)N23 because L (left) conformation "forbidden" or filtered. T0547 16 :IK 1eu1A 21 :VE T0547 19 :GKVCIN 1eu1A 24 :GRAVAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=82072 # 1a41.16.74 read from T0547.t06.many.frag # found chain 1a41 in template set Warning: unaligning (T0547)K20 (1a41)E159 because Y (epsilon') conformation "forbidden" or filtered. T0547 16 :IKNG 1a41 155 :ISPD T0547 21 :VCIN 1a41 160 :IVIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=82074 # 1r6jA.16.21 read from T0547.t06.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)C22 (1r6jA)T219 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I23 (1r6jA)S220 because Y (epsilon') conformation "forbidden" or filtered. T0547 16 :IKNGKV 1r6jA 213 :FKNGKI T0547 24 :N 1r6jA 221 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=82076 # 1b3aA.16.41 read from T0547.t06.many.frag # found chain 1b3aA in training set Warning: unaligning (T0547)N24 (1b3aA)A51 because E (beta_S) conformation "forbidden" or filtered. T0547 16 :IKNGKVCI 1b3aA 43 :TRKNRQVC Number of specific fragments extracted= 1 number of extra gaps= 1 total=82077 # 1w6kA.16.28 read from T0547.t06.many.frag # found chain 1w6kA in template set Warning: unaligning (T0547)N18 (1w6kA)R31 because L (left) conformation "forbidden" or filtered. T0547 16 :IK 1w6kA 29 :CE T0547 19 :GKVCIN 1w6kA 32 :GRQTWT Number of specific fragments extracted= 2 number of extra gaps= 1 total=82079 # 1mc2A.16.67 read from T0547.t06.many.frag # found chain 1mc2A in training set Warning: unaligning (T0547)N24 (1mc2A)G1086 because P (beta_P) conformation "forbidden" or filtered. T0547 16 :IKNGKVCI 1mc2A 1077 :WKNKAIVC Number of specific fragments extracted= 1 number of extra gaps= 1 total=82080 # 1vq2A.16.28 read from T0547.t06.many.frag # found chain 1vq2A in template set T0547 16 :IKNGKVCIN 1vq2A 29 :EKNGRIIST Number of specific fragments extracted= 1 number of extra gaps= 0 total=82081 # 1u9yA.17.32 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)K20 (1u9yA)E36 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1u9yA)R40 because E (beta_S) conformation "forbidden" or filtered. T0547 17 :KNG 1u9yA 33 :PDN T0547 21 :VCI 1u9yA 37 :IYV T0547 25 :Y 1u9yA 41 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=82084 # 1vs0A.17.42 read from T0547.t06.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)N24 (1vs0A)R499 because E (beta_S) conformation "forbidden" or filtered. T0547 17 :KNGKVCI 1vs0A 492 :DHGAVRL T0547 25 :Y 1vs0A 500 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=82086 # 1t77A.17.24 read from T0547.t06.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)N24 (1t77A)E2107 because E (beta_S) conformation "forbidden" or filtered. T0547 17 :KNGKVCI 1t77A 2100 :TSSELYF T0547 25 :Y 1t77A 2108 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=82088 # 1b25A.17.123 read from T0547.t06.many.frag # found chain 1b25A in template set Warning: unaligning (T0547)G19 (1b25A)D126 because G (3-10) conformation "forbidden" or filtered. T0547 17 :KN 1b25A 124 :ED T0547 20 :KVCINY 1b25A 127 :NVSILS Number of specific fragments extracted= 2 number of extra gaps= 1 total=82090 # 1qwyA.17.29 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)N24 (1qwyA)T62 because E (beta_S) conformation "forbidden" or filtered. T0547 17 :KNGKVCI 1qwyA 55 :SNGDYHH T0547 25 :Y 1qwyA 63 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=82092 # 1jb0D.17.49 read from T0547.t06.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)K20 (1jb0D)E53 because P (beta_P) conformation "forbidden" or filtered. T0547 17 :KNG 1jb0D 50 :REG T0547 21 :VCINY 1jb0D 54 :NLVYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=82094 # 1vd6A.17.46 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)N24 (1vd6A)R54 because Y (epsilon') conformation "forbidden" or filtered. T0547 17 :KNGKVCI 1vd6A 47 :RDGVFAV T0547 25 :Y 1vd6A 55 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=82096 # 1w6kA.17.29 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 17 :KNGKVCINY 1w6kA 30 :ERGRQTWTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=82097 # 1vkyA.17.98 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 17 :KNGKVCINY 1vkyA 87 :EEGIWKCLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82098 # 1p1mA.17.23 read from T0547.t06.many.frag # found chain 1p1mA in training set T0547 17 :KNGKVCINY 1p1mA 24 :ENGTIKRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82099 # 1dtdB.17.48 read from T0547.t06.many.frag # found chain 1dtdB in training set Warning: unaligning (T0547)K17 (1dtdB)S54 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1dtdB)G56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1dtdB)T61 because Y (epsilon') conformation "forbidden" or filtered. T0547 18 :N 1dtdB 55 :T T0547 20 :KVCI 1dtdB 57 :QCRT T0547 25 :Y 1dtdB 62 :C Number of specific fragments extracted= 3 number of extra gaps= 3 total=82102 # 1iqzA.17.28 read from T0547.t06.many.frag # found chain 1iqzA in training set T0547 17 :KNGKVCINY 1iqzA 29 :EDGIAYVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82103 # 1uz5A.17.122 read from T0547.t06.many.frag # found chain 1uz5A in template set Warning: unaligning (T0547)K17 (1uz5A)V123 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1uz5A)E126 because Y (epsilon') conformation "forbidden" or filtered. T0547 18 :NG 1uz5A 124 :NG T0547 21 :VCINY 1uz5A 127 :ILIYK Number of specific fragments extracted= 2 number of extra gaps= 2 total=82105 # 2b8mA.17.53 read from T0547.t06.many.frag # found chain 2b8mA in training set T0547 17 :KNGKVCINY 2b8mA 53 :IKGEMTLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82106 # 1eexA.17.43 read from T0547.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)Y25 (1eexA)D52 because L (left) conformation "forbidden" or filtered. T0547 17 :KNGKVCIN 1eexA 44 :VNGAVTEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=82107 # 1b3aA.17.42 read from T0547.t06.many.frag # found chain 1b3aA in training set Warning: unaligning (T0547)N18 (1b3aA)K45 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1b3aA)R47 because P (beta_P) conformation "forbidden" or filtered. T0547 17 :K 1b3aA 44 :R T0547 19 :G 1b3aA 46 :N T0547 21 :VCINY 1b3aA 48 :QVCAN Number of specific fragments extracted= 3 number of extra gaps= 2 total=82110 # 1tvxA.17.45 read from T0547.t06.many.frag # found chain 1tvxA in training set T0547 17 :KNGKVCINY 1tvxA 61 :KDGRKICLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82111 # 1y0yA.17.80 read from T0547.t06.many.frag # found chain 1y0yA in training set Warning: unaligning (T0547)K20 (1y0yA)F84 because P (beta_P) conformation "forbidden" or filtered. T0547 17 :KNG 1y0yA 81 :KNG T0547 21 :VCINY 1y0yA 85 :LRVAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=82113 # 1zh1A.17.32 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)N18 (1zh1A)N69 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1zh1A)S71 because P (beta_P) conformation "forbidden" or filtered. T0547 17 :K 1zh1A 68 :K T0547 19 :G 1zh1A 70 :G T0547 21 :VCINY 1zh1A 72 :MRIVG Number of specific fragments extracted= 3 number of extra gaps= 2 total=82116 # 1mj5A.17.16 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)N18 (1mj5A)G18 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I23 (1mj5A)Y23 because Y (epsilon') conformation "forbidden" or filtered. T0547 17 :K 1mj5A 17 :K T0547 19 :GKVC 1mj5A 19 :RRMA T0547 24 :NY 1mj5A 24 :ID Number of specific fragments extracted= 3 number of extra gaps= 2 total=82119 # 1bupA.17.21 read from T0547.t06.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)N24 (1bupA)I29 because P (beta_P) conformation "forbidden" or filtered. T0547 17 :KNGKVCI 1bupA 22 :QHGKVEI T0547 25 :Y 1bupA 30 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=82121 # 1yzyA.17.122 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)N24 (1yzyA)G129 because S (epsilon) conformation "forbidden" or filtered. T0547 17 :KNGKVCI 1yzyA 122 :FNGYLFV T0547 25 :Y 1yzyA 130 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=82123 # 1r6jA.17.22 read from T0547.t06.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)I23 (1r6jA)S220 because Y (epsilon') conformation "forbidden" or filtered. T0547 17 :KNGKVC 1r6jA 214 :KNGKIT T0547 24 :NY 1r6jA 221 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=82125 # 1rwrA.17.131 read from T0547.t06.many.frag # found chain 1rwrA in training set Warning: unaligning (T0547)N18 (1rwrA)G133 because S (epsilon) conformation "forbidden" or filtered. T0547 17 :K 1rwrA 132 :N T0547 19 :GKVCINY 1rwrA 134 :GRIGLDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=82127 # 1rmd.17.39 read from T0547.t06.many.frag # found chain 1rmd in template set T0547 17 :KNGKVCINY 1rmd 40 :SCKHLFCRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=82128 # 1u0fA.17.46 read from T0547.t06.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)K17 (1u0fA)N46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y25 (1u0fA)Y54 because G (3-10) conformation "forbidden" or filtered. T0547 18 :NGKVCIN 1u0fA 47 :HGHILVD Number of specific fragments extracted= 1 number of extra gaps= 2 total=82129 # 1zy9A.17.139 read from T0547.t06.many.frag # found chain 1zy9A in template set Warning: unaligning (T0547)N18 (1zy9A)D129 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1zy9A)E131 because E (beta_S) conformation "forbidden" or filtered. T0547 17 :K 1zy9A 128 :E T0547 19 :G 1zy9A 130 :G T0547 21 :VCINY 1zy9A 132 :LVAYL Number of specific fragments extracted= 3 number of extra gaps= 2 total=82132 1moxC expands to /projects/compbio/data/pdb/1mox.pdb.gz 1moxC:# 1moxC.17.25 read from T0547.t06.many.frag # adding 1moxC to template set # found chain 1moxC in template set T0547 17 :KNGKVCINY 1moxC 26 :QEDKPACVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=82133 # 1iwmA.17.77 read from T0547.t06.many.frag # found chain 1iwmA in template set T0547 17 :KNGKVCINY 1iwmA 78 :QPGNVQLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82134 # 2f6eA.17.87 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)K17 (2f6eA)N89 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N18 (2f6eA)G90 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (2f6eA)N91 because P (beta_P) conformation "forbidden" or filtered. T0547 20 :KVCINY 2f6eA 92 :MYYFMP Number of specific fragments extracted= 1 number of extra gaps= 1 total=82135 # 1u9yA.18.33 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 18 :NGKVCINYE 1u9yA 34 :DNEIYVRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82136 # 1vs0A.18.43 read from T0547.t06.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)N18 (1vs0A)H493 because L (left) conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1vs0A 494 :GAVRLRSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=82137 # 1t77A.18.25 read from T0547.t06.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)G19 (1t77A)S2102 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1t77A)E2103 because Y (epsilon') conformation "forbidden" or filtered. T0547 18 :N 1t77A 2101 :S T0547 21 :VCINYE 1t77A 2104 :LYFEVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=82139 # 1b25A.18.124 read from T0547.t06.many.frag # found chain 1b25A in template set Warning: unaligning (T0547)N18 (1b25A)D125 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1b25A)D126 because G (3-10) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1b25A 127 :NVSILSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=82140 # 1qwyA.18.30 read from T0547.t06.many.frag # found chain 1qwyA in training set T0547 18 :NGKVCINYE 1qwyA 56 :NGDYHHTPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82141 # 1jb0D.18.50 read from T0547.t06.many.frag # found chain 1jb0D in template set T0547 18 :NGKVCINYE 1jb0D 51 :EGENLVYFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82142 # 2b8mA.18.54 read from T0547.t06.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)K20 (2b8mA)E56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (2b8mA)E62 because S (epsilon) conformation "forbidden" or filtered. T0547 18 :NG 2b8mA 54 :KG T0547 21 :VCINY 2b8mA 57 :MTLTL Number of specific fragments extracted= 2 number of extra gaps= 2 total=82144 # 1iqzA.18.29 read from T0547.t06.many.frag # found chain 1iqzA in training set T0547 18 :NGKVCINYE 1iqzA 30 :DGIAYVTLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82145 # 1vkyA.18.99 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 18 :NGKVCINYE 1vkyA 88 :EGIWKCLVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82146 # 1w6kA.18.30 read from T0547.t06.many.frag # found chain 1w6kA in template set Warning: unaligning (T0547)N18 (1w6kA)R31 because L (left) conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1w6kA 32 :GRQTWTYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=82147 # 1dtdB.18.49 read from T0547.t06.many.frag # found chain 1dtdB in training set Warning: unaligning (T0547)N24 (1dtdB)T61 because Y (epsilon') conformation "forbidden" or filtered. T0547 18 :NGKVCI 1dtdB 55 :TGQCRT T0547 25 :YE 1dtdB 62 :CI Number of specific fragments extracted= 2 number of extra gaps= 1 total=82149 # 1zh1A.18.33 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)N18 (1zh1A)N69 because L (left) conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1zh1A 70 :GSMRIVGP Number of specific fragments extracted= 1 number of extra gaps= 1 total=82150 # 1y0yA.18.81 read from T0547.t06.many.frag # found chain 1y0yA in training set Warning: unaligning (T0547)N18 (1y0yA)N82 because G (3-10) conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1y0yA 83 :GFLRVAPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=82151 # 1vd6A.18.47 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)E26 (1vd6A)D56 because P (beta_P) conformation "forbidden" or filtered. T0547 18 :NGKVCINY 1vd6A 48 :DGVFAVRH Number of specific fragments extracted= 1 number of extra gaps= 1 total=82152 # 1bupA.18.22 read from T0547.t06.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)N24 (1bupA)I29 because P (beta_P) conformation "forbidden" or filtered. T0547 18 :NGKVCI 1bupA 23 :HGKVEI T0547 25 :YE 1bupA 30 :AN Number of specific fragments extracted= 2 number of extra gaps= 1 total=82154 # 1b3aA.18.43 read from T0547.t06.many.frag # found chain 1b3aA in training set T0547 18 :NGKVCINYE 1b3aA 45 :KNRQVCANP Number of specific fragments extracted= 1 number of extra gaps= 0 total=82155 # 1iwmA.18.78 read from T0547.t06.many.frag # found chain 1iwmA in template set T0547 18 :NGKVCINYE 1iwmA 79 :PGNVQLVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=82156 # 1p1mA.18.24 read from T0547.t06.many.frag # found chain 1p1mA in training set T0547 18 :NGKVCINYE 1p1mA 25 :NGTIKRVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82157 # 2f6eA.18.88 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)N18 (2f6eA)G90 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (2f6eA)N91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (2f6eA)M96 because P (beta_P) conformation "forbidden" or filtered. T0547 20 :KVCI 2f6eA 92 :MYYF T0547 25 :YE 2f6eA 97 :PD Number of specific fragments extracted= 2 number of extra gaps= 2 total=82159 # 1mj5A.18.17 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G19 (1mj5A)R19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1mj5A)I24 because P (beta_P) conformation "forbidden" or filtered. T0547 18 :N 1mj5A 18 :G T0547 20 :KVCI 1mj5A 20 :RMAY T0547 25 :YE 1mj5A 25 :DE Number of specific fragments extracted= 3 number of extra gaps= 2 total=82162 # 1pg4A.18.61 read from T0547.t06.many.frag # found chain 1pg4A in training set Warning: unaligning (T0547)E26 (1pg4A)Y70 because L (left) conformation "forbidden" or filtered. T0547 18 :NGKVCINY 1pg4A 62 :PGNVSIKW Number of specific fragments extracted= 1 number of extra gaps= 1 total=82163 # 1uz5A.18.123 read from T0547.t06.many.frag # found chain 1uz5A in template set Warning: unaligning (T0547)K20 (1uz5A)E126 because Y (epsilon') conformation "forbidden" or filtered. T0547 18 :NG 1uz5A 124 :NG T0547 21 :VCINYE 1uz5A 127 :ILIYKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=82165 # 1sbxA.18.20 read from T0547.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0547)N18 (1sbxA)G107 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G19 (1sbxA)E108 because E (beta_S) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1sbxA 109 :TISCFVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=82166 # 1tvxA.18.46 read from T0547.t06.many.frag # found chain 1tvxA in training set T0547 18 :NGKVCINYE 1tvxA 62 :DGRKICLDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=82167 # 1flmA.18.40 read from T0547.t06.many.frag # found chain 1flmA in training set T0547 18 :NGKVCINYE 1flmA 41 :GNRIVVPVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82168 # 1eexA.18.44 read from T0547.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)N18 (1eexA)N45 because L (left) conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1eexA 46 :GAVTELDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=82169 # 1u0fA.18.47 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 18 :NGKVCINYE 1u0fA 47 :HGHILVDYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=82170 # 1r6jA.18.23 read from T0547.t06.many.frag # found chain 1r6jA in training set T0547 18 :NGKVCINYE 1r6jA 215 :NGKITSIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82171 # 1vhyA.18.60 read from T0547.t06.many.frag # found chain 1vhyA in template set T0547 18 :NGKVCINYE 1vhyA 59 :KKSVKVEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82172 # 1vzyA.18.81 read from T0547.t06.many.frag # found chain 1vzyA in template set Warning: unaligning (T0547)V21 because of BadResidue code BAD_PEPTIDE in next template residue (1vzyA)R86 Warning: unaligning (T0547)C22 because of BadResidue code BAD_PEPTIDE at template residue (1vzyA)R86 T0547 18 :NGK 1vzyA 82 :KGE T0547 23 :INYE 1vzyA 87 :AYVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=82174 # 1u9yA.19.34 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 19 :GKVCINYEK 1u9yA 35 :NEIYVRIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82175 # 1vs0A.19.44 read from T0547.t06.many.frag # found chain 1vs0A in template set T0547 19 :GKVCINYEK 1vs0A 494 :GAVRLRSRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=82176 # 1t77A.19.26 read from T0547.t06.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)G19 (1t77A)S2102 because G (3-10) conformation "forbidden" or filtered. T0547 20 :KVCINYEK 1t77A 2103 :ELYFEVDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=82177 # 1qwyA.19.31 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)K27 (1qwyA)G65 because T (delta_L) conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1qwyA 57 :GDYHHTPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=82178 # 2b8mA.19.55 read from T0547.t06.many.frag # found chain 2b8mA in training set T0547 19 :GKVCINYEK 2b8mA 55 :GEMTLTLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=82179 # 1b25A.19.125 read from T0547.t06.many.frag # found chain 1b25A in template set Warning: unaligning (T0547)N24 (1b25A)L131 because E (beta_S) conformation "forbidden" or filtered. T0547 19 :GKVCI 1b25A 126 :DNVSI T0547 25 :YEK 1b25A 132 :SAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=82181 # 1iqzA.19.30 read from T0547.t06.many.frag # found chain 1iqzA in training set T0547 19 :GKVCINYEK 1iqzA 31 :GIAYVTLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82182 # 1jb0D.19.51 read from T0547.t06.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)K20 (1jb0D)E53 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1jb0D)Y57 because E (beta_S) conformation "forbidden" or filtered. T0547 19 :G 1jb0D 52 :G T0547 21 :VCI 1jb0D 54 :NLV T0547 25 :YEK 1jb0D 58 :FAR Number of specific fragments extracted= 3 number of extra gaps= 2 total=82185 # 1w6kA.19.31 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 19 :GKVCINYEK 1w6kA 32 :GRQTWTYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82186 # 1zh1A.19.34 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E26 (1zh1A)P77 because P (beta_P) conformation "forbidden" or filtered. T0547 19 :GKVCINY 1zh1A 70 :GSMRIVG T0547 27 :K 1zh1A 78 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=82188 # 1vkyA.19.100 read from T0547.t06.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)K20 (1vkyA)I90 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1vkyA)L94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1vkyA)P97 because C (cis) conformation "forbidden" or filtered. T0547 19 :G 1vkyA 89 :G T0547 21 :VCI 1vkyA 91 :WKC T0547 25 :YE 1vkyA 95 :VR Number of specific fragments extracted= 3 number of extra gaps= 3 total=82191 # 2f6eA.19.89 read from T0547.t06.many.frag # found chain 2f6eA in template set T0547 19 :GKVCINYEK 2f6eA 91 :NMYYFMPDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=82192 # 1dtdB.19.50 read from T0547.t06.many.frag # found chain 1dtdB in training set Warning: unaligning (T0547)K27 (1dtdB)P64 because P (beta_P) conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1dtdB 56 :GQCRTTCI Number of specific fragments extracted= 1 number of extra gaps= 1 total=82193 # 1b3aA.19.44 read from T0547.t06.many.frag # found chain 1b3aA in training set T0547 19 :GKVCINYEK 1b3aA 46 :NRQVCANPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82194 # 1vd6A.19.48 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 19 :GKVCINYEK 1vd6A 49 :GVFAVRHDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=82195 # 1iwmA.19.79 read from T0547.t06.many.frag # found chain 1iwmA in template set T0547 19 :GKVCINYEK 1iwmA 80 :GNVQLVDNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82196 # 1y0yA.19.82 read from T0547.t06.many.frag # found chain 1y0yA in training set Warning: unaligning (T0547)K20 (1y0yA)F84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1y0yA)G91 because S (epsilon) conformation "forbidden" or filtered. T0547 19 :G 1y0yA 83 :G T0547 21 :VCINYE 1y0yA 85 :LRVAPI Number of specific fragments extracted= 2 number of extra gaps= 2 total=82198 # 1bupA.19.23 read from T0547.t06.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)E26 (1bupA)N31 because P (beta_P) conformation "forbidden" or filtered. T0547 19 :GKVCINY 1bupA 24 :GKVEIIA T0547 27 :K 1bupA 32 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=82200 # 1flmA.19.41 read from T0547.t06.many.frag # found chain 1flmA in training set T0547 19 :GKVCINYEK 1flmA 42 :NRIVVPVGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82201 # 1u0fA.19.48 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 19 :GKVCINYEK 1u0fA 48 :GHILVDYSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82202 # 1vzyA.19.82 read from T0547.t06.many.frag # found chain 1vzyA in template set Warning: unaligning (T0547)V21 because of BadResidue code BAD_PEPTIDE in next template residue (1vzyA)R86 Warning: unaligning (T0547)C22 because of BadResidue code BAD_PEPTIDE at template residue (1vzyA)R86 Warning: unaligning (T0547)K27 (1vzyA)N91 because D (zeta) conformation "forbidden" or filtered. T0547 19 :GK 1vzyA 83 :GE T0547 23 :INYE 1vzyA 87 :AYVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=82204 # 1sbxA.19.21 read from T0547.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0547)I23 (1sbxA)C112 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1sbxA)G116 because L (left) conformation "forbidden" or filtered. T0547 19 :GKVC 1sbxA 108 :ETIS T0547 24 :NYE 1sbxA 113 :FVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=82206 # 1mj5A.19.18 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G19 (1mj5A)R19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1mj5A)G27 because S (epsilon) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1mj5A 20 :RMAYIDE Number of specific fragments extracted= 1 number of extra gaps= 2 total=82207 # 2b20A.19.181 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)K27 (2b20A)G187 because Y (epsilon') conformation "forbidden" or filtered. T0547 19 :GKVCINYE 2b20A 179 :RRVWIFTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=82208 # 1chd.19.94 read from T0547.t06.many.frag # found chain 1chd in training set Warning: unaligning (T0547)G19 (1chd)A241 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K20 (1chd)N242 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINYEK 1chd 243 :YQIKIHD Number of specific fragments extracted= 1 number of extra gaps= 1 total=82209 # 1tvxA.19.47 read from T0547.t06.many.frag # found chain 1tvxA in training set T0547 19 :GKVCINYEK 1tvxA 63 :GRKICLDPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82210 # 1s7mA.19.15 read from T0547.t06.many.frag # found chain 1s7mA in template set Warning: unaligning (T0547)K20 (1s7mA)G557 because Y (epsilon') conformation "forbidden" or filtered. T0547 19 :G 1s7mA 556 :D T0547 21 :VCINYEK 1s7mA 558 :LTITPAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=82212 # 3vub.19.58 read from T0547.t06.many.frag # found chain 3vub in training set Warning: unaligning (T0547)G19 (3vub)E59 because E (beta_S) conformation "forbidden" or filtered. T0547 20 :KVCINYEK 3vub 60 :SWRMMTTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=82213 # 1r6jA.19.24 read from T0547.t06.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)E26 (1r6jA)K223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1r6jA)D224 because T (delta_L) conformation "forbidden" or filtered. T0547 19 :GKVCINY 1r6jA 216 :GKITSIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=82214 # 1vhyA.19.61 read from T0547.t06.many.frag # found chain 1vhyA in template set Warning: unaligning (T0547)K27 (1vhyA)G68 because Y (epsilon') conformation "forbidden" or filtered. T0547 19 :GKVCINYE 1vhyA 60 :KSVKVEIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=82215 # 1u9yA.20.35 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)K27 (1u9yA)D43 because P (beta_P) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1u9yA 36 :EIYVRIV T0547 28 :K 1u9yA 44 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=82217 # 1vs0A.20.45 read from T0547.t06.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)K28 (1vs0A)G503 because T (delta_L) conformation "forbidden" or filtered. T0547 20 :KVCINYEK 1vs0A 495 :AVRLRSRS Number of specific fragments extracted= 1 number of extra gaps= 1 total=82218 # 1t77A.20.27 read from T0547.t06.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)N24 (1t77A)E2107 because E (beta_S) conformation "forbidden" or filtered. T0547 20 :KVCI 1t77A 2103 :ELYF T0547 25 :YEKK 1t77A 2108 :VDEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=82220 # 1qwyA.20.32 read from T0547.t06.many.frag # found chain 1qwyA in training set T0547 20 :KVCINYEKK 1qwyA 58 :DYHHTPDGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=82221 # 2b8mA.20.56 read from T0547.t06.many.frag # found chain 2b8mA in training set T0547 20 :KVCINYEKK 2b8mA 56 :EMTLTLEDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82222 # 1iqzA.20.31 read from T0547.t06.many.frag # found chain 1iqzA in training set Warning: unaligning (T0547)C22 (1iqzA)Y34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1iqzA)D39 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1iqzA)N40 because L (left) conformation "forbidden" or filtered. T0547 20 :KV 1iqzA 32 :IA T0547 23 :INYE 1iqzA 35 :VTLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=82224 # 1jb0D.20.52 read from T0547.t06.many.frag # found chain 1jb0D in template set T0547 20 :KVCINYEKK 1jb0D 53 :ENLVYFARK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82225 # 1b25A.20.126 read from T0547.t06.many.frag # found chain 1b25A in template set T0547 20 :KVCINYEKK 1b25A 127 :NVSILSAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82226 # 1vkyA.20.101 read from T0547.t06.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)K27 (1vkyA)P97 because C (cis) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1vkyA 90 :IWKCLVR T0547 28 :K 1vkyA 98 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=82228 # 1b3aA.20.45 read from T0547.t06.many.frag # found chain 1b3aA in training set T0547 20 :KVCINYEKK 1b3aA 47 :RQVCANPEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82229 # 1w6kA.20.32 read from T0547.t06.many.frag # found chain 1w6kA in template set Warning: unaligning (T0547)K20 (1w6kA)R33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1w6kA)A44 T0547 21 :VCINYEK 1w6kA 34 :QTWTYLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=82230 # 2f6eA.20.90 read from T0547.t06.many.frag # found chain 2f6eA in template set T0547 20 :KVCINYEKK 2f6eA 92 :MYYFMPDTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82231 # 1zh1A.20.35 read from T0547.t06.many.frag # found chain 1zh1A in template set T0547 20 :KVCINYEKK 1zh1A 71 :SMRIVGPRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=82232 # 1dtdB.20.51 read from T0547.t06.many.frag # found chain 1dtdB in training set Warning: unaligning (T0547)N24 (1dtdB)T61 because Y (epsilon') conformation "forbidden" or filtered. T0547 20 :KVCI 1dtdB 57 :QCRT T0547 25 :YEKK 1dtdB 62 :CIPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=82234 # 1y0yA.20.83 read from T0547.t06.many.frag # found chain 1y0yA in training set Warning: unaligning (T0547)N24 (1y0yA)A88 because E (beta_S) conformation "forbidden" or filtered. T0547 20 :KVCI 1y0yA 84 :FLRV T0547 25 :YEKK 1y0yA 89 :PIGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=82236 # 1sbxA.20.22 read from T0547.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0547)I23 (1sbxA)C112 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1sbxA)G116 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1sbxA)G117 because T (delta_L) conformation "forbidden" or filtered. T0547 20 :KVC 1sbxA 109 :TIS T0547 24 :NYE 1sbxA 113 :FVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=82238 # 1vd6A.20.49 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)K20 (1vd6A)V50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1vd6A)R54 because Y (epsilon') conformation "forbidden" or filtered. T0547 21 :VCI 1vd6A 51 :FAV T0547 25 :YEKK 1vd6A 55 :HDPD Number of specific fragments extracted= 2 number of extra gaps= 2 total=82240 # 2cfeA.20.94 read from T0547.t06.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)Y25 (2cfeA)N100 because Y (epsilon') conformation "forbidden" or filtered. T0547 20 :KVCIN 2cfeA 95 :LLSMA T0547 26 :EKK 2cfeA 101 :AGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=82242 # 2b20A.20.182 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)K27 (2b20A)G187 because Y (epsilon') conformation "forbidden" or filtered. T0547 20 :KVCINYE 2b20A 180 :RVWIFTT T0547 28 :K 2b20A 188 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=82244 # 1u0fA.20.49 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 20 :KVCINYEKK 1u0fA 49 :HILVDYSKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=82245 # 1iwmA.20.80 read from T0547.t06.many.frag # found chain 1iwmA in template set Warning: unaligning (T0547)K28 (1iwmA)G89 because T (delta_L) conformation "forbidden" or filtered. T0547 20 :KVCINYEK 1iwmA 81 :NVQLVDNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=82246 # 1flmA.20.42 read from T0547.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0547)K28 (1flmA)M51 because L (left) conformation "forbidden" or filtered. T0547 20 :KVCINYEK 1flmA 43 :RIVVPVGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=82247 # 1mj5A.20.19 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)K27 (1mj5A)G27 because S (epsilon) conformation "forbidden" or filtered. T0547 20 :KVCINYE 1mj5A 20 :RMAYIDE T0547 28 :K 1mj5A 28 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=82249 # 1s7mA.20.16 read from T0547.t06.many.frag # found chain 1s7mA in template set Warning: unaligning (T0547)K20 (1s7mA)G557 because Y (epsilon') conformation "forbidden" or filtered. T0547 21 :VCINYEKK 1s7mA 558 :LTITPANG Number of specific fragments extracted= 1 number of extra gaps= 1 total=82250 # 1vhyA.20.62 read from T0547.t06.many.frag # found chain 1vhyA in template set Warning: unaligning (T0547)K27 (1vhyA)G68 because Y (epsilon') conformation "forbidden" or filtered. T0547 20 :KVCINYE 1vhyA 61 :SVKVEIL T0547 28 :K 1vhyA 69 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=82252 # 1uadC.20.72 read from T0547.t06.many.frag # found chain 1uadC in template set T0547 20 :KVCINYEKK 1uadC 73 :DIIVTTKSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82253 # 2akaA.20.69 read from T0547.t06.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)N24 (2akaA)K63 because E (beta_S) conformation "forbidden" or filtered. T0547 20 :KVCI 2akaA 59 :SFTF T0547 25 :YEKK 2akaA 64 :TVDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=82255 # 1tvxA.20.48 read from T0547.t06.many.frag # found chain 1tvxA in training set T0547 20 :KVCINYEKK 1tvxA 64 :RKICLDPDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82256 # 1r6jA.20.25 read from T0547.t06.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)E26 (1r6jA)K223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1r6jA)D224 because T (delta_L) conformation "forbidden" or filtered. T0547 20 :KVCINY 1r6jA 217 :KITSIV T0547 28 :K 1r6jA 225 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=82258 # 2bdeA.20.79 read from T0547.t06.many.frag # found chain 2bdeA in template set Warning: unaligning (T0547)K27 (2bdeA)Y87 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (2bdeA)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 20 :KVCINYE 2bdeA 80 :NILKLSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=82259 # 1vs0A.21.46 read from T0547.t06.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)N24 (1vs0A)R499 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCI 1vs0A 496 :VRL T0547 25 :YEKKP 1vs0A 500 :SRSGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=82261 # 1u9yA.21.36 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)K28 (1u9yA)E44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1u9yA)I45 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINYEK 1u9yA 37 :IYVRIVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=82262 # 1jb0D.21.53 read from T0547.t06.many.frag # found chain 1jb0D in template set T0547 21 :VCINYEKKP 1jb0D 54 :NLVYFARKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82263 # 1b3aA.21.46 read from T0547.t06.many.frag # found chain 1b3aA in training set T0547 21 :VCINYEKKP 1b3aA 48 :QVCANPEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82264 # 1qwyA.21.33 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)K27 (1qwyA)G65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1qwyA)W67 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINYE 1qwyA 59 :YHHTPD T0547 28 :K 1qwyA 66 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=82266 # 1t77A.21.28 read from T0547.t06.many.frag # found chain 1t77A in template set T0547 21 :VCINYEKKP 1t77A 2104 :LYFEVDEED Number of specific fragments extracted= 1 number of extra gaps= 0 total=82267 # 1wddA.21.39 read from T0547.t06.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)E26 (1wddA)Q45 because P (beta_P) conformation "forbidden" or filtered. T0547 21 :VCINY 1wddA 40 :FRVTP T0547 27 :KKP 1wddA 46 :PGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=82269 # 2b8mA.21.57 read from T0547.t06.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)E26 (2b8mA)E62 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (2b8mA)Q64 because P (beta_P) conformation "forbidden" or filtered. T0547 21 :VCINY 2b8mA 57 :MTLTL T0547 27 :K 2b8mA 63 :D T0547 29 :P 2b8mA 65 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=82272 # 1vkyA.21.102 read from T0547.t06.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)K27 (1vkyA)P97 because C (cis) conformation "forbidden" or filtered. T0547 21 :VCINYE 1vkyA 91 :WKCLVR T0547 28 :KP 1vkyA 98 :GQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=82274 # 2b20A.21.183 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)P29 (2b20A)V189 because Y (epsilon') conformation "forbidden" or filtered. T0547 21 :VCINYEKK 2b20A 181 :VWIFTTGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=82275 # 1tvxA.21.49 read from T0547.t06.many.frag # found chain 1tvxA in training set Warning: unaligning (T0547)N24 (1tvxA)L68 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCI 1tvxA 65 :KIC T0547 25 :YEKKP 1tvxA 69 :DPDAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=82277 # 2bopA.21.50 read from T0547.t06.many.frag # found chain 2bopA in training set Warning: unaligning (T0547)V21 because of BadResidue code BAD_PEPTIDE at template residue (2bopA)I376 Warning: unaligning (T0547)N24 (2bopA)T379 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CI 2bopA 377 :LI T0547 25 :YEKKP 2bopA 380 :FGSPS Number of specific fragments extracted= 2 number of extra gaps= 2 total=82279 # 1y0yA.21.84 read from T0547.t06.many.frag # found chain 1y0yA in training set T0547 21 :VCINYEKKP 1y0yA 85 :LRVAPIGGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82280 # 1cxqA.21.40 read from T0547.t06.many.frag # found chain 1cxqA in training set T0547 21 :VCINYEKKP 1cxqA 88 :IVVTQHGRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82281 # 1s7mA.21.17 read from T0547.t06.many.frag # found chain 1s7mA in template set T0547 21 :VCINYEKKP 1s7mA 558 :LTITPANGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82282 # 2akaA.21.70 read from T0547.t06.many.frag # found chain 2akaA in template set T0547 21 :VCINYEKKP 2akaA 60 :FTFKTVDGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82283 # 1flmA.21.43 read from T0547.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0547)K28 (1flmA)M51 because L (left) conformation "forbidden" or filtered. T0547 21 :VCINYEK 1flmA 44 :IVVPVGG T0547 29 :P 1flmA 52 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=82285 # 1y60A.21.23 read from T0547.t06.many.frag # found chain 1y60A in template set T0547 21 :VCINYEKKP 1y60A 25 :LIIGPRGSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=82286 # 1xiwA.21.74 read from T0547.t06.many.frag # found chain 1xiwA in template set Warning: unaligning (T0547)N24 (1xiwA)Y78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1xiwA)K83 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCI 1xiwA 75 :YVC T0547 25 :YEKK 1xiwA 79 :PRGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=82288 # 1uekA.21.38 read from T0547.t06.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)E26 (1uekA)V44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1uekA)G47 because S (epsilon) conformation "forbidden" or filtered. T0547 21 :VCINY 1uekA 39 :LVVEP T0547 27 :KK 1uekA 45 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=82290 # 1sbxA.21.23 read from T0547.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0547)E26 (1sbxA)V115 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1sbxA)G116 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1sbxA)E118 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINY 1sbxA 110 :ISCFV T0547 28 :K 1sbxA 117 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=82292 # 1iqzA.21.32 read from T0547.t06.many.frag # found chain 1iqzA in training set Warning: unaligning (T0547)K27 (1iqzA)D39 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1iqzA)N40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1iqzA)Q41 because G (3-10) conformation "forbidden" or filtered. T0547 21 :VCINYE 1iqzA 33 :AYVTLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=82293 # 1ypqA.21.19 read from T0547.t06.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)K27 (1ypqA)G161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 21 :VCINYE 1ypqA 155 :CYLFSS T0547 28 :K 1ypqA 162 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=82295 # 1b25A.21.127 read from T0547.t06.many.frag # found chain 1b25A in template set T0547 21 :VCINYEKKP 1b25A 128 :VSILSAEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82296 # 1dtdB.21.52 read from T0547.t06.many.frag # found chain 1dtdB in training set Warning: unaligning (T0547)E26 (1dtdB)I63 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 because last residue in template chain is (1dtdB)V66 T0547 21 :VCINY 1dtdB 58 :CRTTC T0547 27 :KK 1dtdB 64 :PY Number of specific fragments extracted= 2 number of extra gaps= 1 total=82298 # 1zh1A.21.36 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)Y25 (1zh1A)G76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1zh1A)C80 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCIN 1zh1A 72 :MRIV T0547 26 :EKK 1zh1A 77 :PRT Number of specific fragments extracted= 2 number of extra gaps= 2 total=82300 1qb5D expands to /projects/compbio/data/pdb/1qb5.pdb.gz 1qb5D:# 1qb5D.21.36 read from T0547.t06.many.frag # adding 1qb5D to template set # found chain 1qb5D in template set T0547 21 :VCINYEKKP 1qb5D 37 :MYVVSSTGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82301 # 1w6kA.21.33 read from T0547.t06.many.frag # found chain 1w6kA in template set Warning: unaligning (T0547)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1w6kA)A44 T0547 21 :VCINYEK 1w6kA 34 :QTWTYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82302 # 1r6xA.21.100 read from T0547.t06.many.frag # found chain 1r6xA in training set Warning: unaligning (T0547)E26 (1r6xA)D107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1r6xA)I110 because E (beta_S) conformation "forbidden" or filtered. T0547 21 :VCINY 1r6xA 102 :IALFQ T0547 27 :KK 1r6xA 108 :DE Number of specific fragments extracted= 2 number of extra gaps= 2 total=82304 # 2f6eA.21.91 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)K28 (2f6eA)A100 because T (delta_L) conformation "forbidden" or filtered. T0547 21 :VCINYEK 2f6eA 93 :YYFMPDT T0547 29 :P 2f6eA 101 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=82306 # 1wddA.22.40 read from T0547.t06.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)E26 (1wddA)Q45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1wddA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 22 :CINY 1wddA 41 :RVTP T0547 27 :K 1wddA 46 :P T0547 29 :PA 1wddA 48 :VP Number of specific fragments extracted= 3 number of extra gaps= 2 total=82309 # 1u9yA.22.37 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)P29 (1u9yA)I45 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINYEKK 1u9yA 38 :YVRIVDE T0547 30 :A 1u9yA 46 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=82311 # 1qwyA.22.34 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)K27 (1qwyA)G65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1qwyA)W67 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINYE 1qwyA 60 :HHTPD T0547 28 :K 1qwyA 66 :N T0547 30 :A 1qwyA 68 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=82314 # 1jb0D.22.54 read from T0547.t06.many.frag # found chain 1jb0D in template set T0547 22 :CINYEKKPA 1jb0D 55 :LVYFARKEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82315 # 1t77A.22.29 read from T0547.t06.many.frag # found chain 1t77A in template set T0547 22 :CINYEKKPA 1t77A 2105 :YFEVDEEDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=82316 # 1b3aA.22.47 read from T0547.t06.many.frag # found chain 1b3aA in training set T0547 22 :CINYEKKPA 1b3aA 49 :VCANPEKKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=82317 # 2b20A.22.184 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)K27 (2b20A)G187 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2b20A)V189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2b20A)E193 T0547 22 :CINYE 2b20A 182 :WIFTT T0547 28 :K 2b20A 188 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=82319 # 1vs0A.22.47 read from T0547.t06.many.frag # found chain 1vs0A in template set T0547 22 :CINYEKKPA 1vs0A 497 :RLRSRSGRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82320 # 2b8mA.22.58 read from T0547.t06.many.frag # found chain 2b8mA in training set T0547 22 :CINYEKKPA 2b8mA 58 :TLTLEDQEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=82321 # 7odcA.22.10 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)C22 (7odcA)C11 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYEKKPA 7odcA 12 :HILDEGFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=82322 # 1cxqA.22.41 read from T0547.t06.many.frag # found chain 1cxqA in training set T0547 22 :CINYEKKPA 1cxqA 89 :VVTQHGRVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=82323 # 1vkyA.22.103 read from T0547.t06.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)K27 (1vkyA)P97 because C (cis) conformation "forbidden" or filtered. T0547 22 :CINYE 1vkyA 92 :KCLVR T0547 28 :KPA 1vkyA 98 :GQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=82325 # 2bopA.22.51 read from T0547.t06.many.frag # found chain 2bopA in training set Warning: unaligning (T0547)K27 (2bopA)S382 because Y (epsilon') conformation "forbidden" or filtered. T0547 22 :CINYE 2bopA 377 :LITFG T0547 28 :KPA 2bopA 383 :PSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=82327 # 1tvxA.22.50 read from T0547.t06.many.frag # found chain 1tvxA in training set Warning: unaligning (T0547)K28 (1tvxA)A72 because P (beta_P) conformation "forbidden" or filtered. T0547 22 :CINYEK 1tvxA 66 :ICLDPD T0547 29 :PA 1tvxA 73 :PR Number of specific fragments extracted= 2 number of extra gaps= 1 total=82329 # 1y0yA.22.85 read from T0547.t06.many.frag # found chain 1y0yA in training set T0547 22 :CINYEKKPA 1y0yA 86 :RVAPIGGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82330 1je5A expands to /projects/compbio/data/pdb/1je5.pdb.gz 1je5A:# 1je5A.22.41 read from T0547.t06.many.frag # adding 1je5A to template set # found chain 1je5A in template set T0547 22 :CINYEKKPA 1je5A 42 :LTIPNKDPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82331 # 1qnaA.22.30 read from T0547.t06.many.frag # found chain 1qnaA in training set Warning: unaligning (T0547)N24 (1qnaA)N33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1qnaA)L38 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CI 1qnaA 31 :TV T0547 25 :YEKK 1qnaA 34 :LDCK T0547 30 :A 1qnaA 39 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=82334 # 1flmA.22.44 read from T0547.t06.many.frag # found chain 1flmA in training set T0547 22 :CINYEKKPA 1flmA 45 :VVPVGGMHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82335 # 1c1yB.22.14 read from T0547.t06.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)K27 (1c1yB)N74 because P (beta_P) conformation "forbidden" or filtered. T0547 22 :CINYE 1c1yB 69 :VVNVR T0547 28 :KPA 1c1yB 75 :GMS Number of specific fragments extracted= 2 number of extra gaps= 1 total=82337 # 1y60A.22.24 read from T0547.t06.many.frag # found chain 1y60A in template set T0547 22 :CINYEKKPA 1y60A 26 :IIGPRGSPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82338 # 1ypqA.22.20 read from T0547.t06.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 22 :CINYEKK 1ypqA 156 :YLFSSGS T0547 30 :A 1ypqA 164 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=82340 # 1zh1A.22.37 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E26 (1zh1A)P77 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1zh1A)C80 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINY 1zh1A 73 :RIVG T0547 27 :KK 1zh1A 78 :RT T0547 30 :A 1zh1A 81 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=82343 # 2akaA.22.71 read from T0547.t06.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)A30 (2akaA)D69 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINYEKKP 2akaA 61 :TFKTVDGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=82344 # 1s7mA.22.18 read from T0547.t06.many.frag # found chain 1s7mA in template set Warning: unaligning (T0547)N24 (1s7mA)T561 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1s7mA)G565 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1s7mA)G567 because S (epsilon) conformation "forbidden" or filtered. T0547 22 :CI 1s7mA 559 :TI T0547 25 :YEK 1s7mA 562 :PAN T0547 29 :P 1s7mA 566 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=82347 # 1vqoS.22.65 read from T0547.t06.many.frag # found chain 1vqoS in template set Warning: unaligning (T0547)N24 (1vqoS)R67 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1vqoS)D72 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1vqoS)D73 because D (zeta) conformation "forbidden" or filtered. T0547 22 :CI 1vqoS 65 :VV T0547 25 :YEKK 1vqoS 68 :LSED Number of specific fragments extracted= 2 number of extra gaps= 2 total=82349 # 1sbxA.22.24 read from T0547.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0547)K27 (1sbxA)G116 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1sbxA)E118 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINYE 1sbxA 111 :SCFVV T0547 28 :K 1sbxA 117 :G T0547 30 :A 1sbxA 119 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=82352 # 1uekA.22.39 read from T0547.t06.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)P29 (1uekA)G47 because S (epsilon) conformation "forbidden" or filtered. T0547 22 :CINYEKK 1uekA 40 :VVEPVSS T0547 30 :A 1uekA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=82354 # 1xiwA.22.75 read from T0547.t06.many.frag # found chain 1xiwA in template set Warning: unaligning (T0547)N24 (1xiwA)Y78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1xiwA)G81 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1xiwA)K83 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CI 1xiwA 76 :VC T0547 25 :YE 1xiwA 79 :PR T0547 28 :K 1xiwA 82 :S T0547 30 :A 1xiwA 84 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=82358 # 1p0yA.22.38 read from T0547.t06.many.frag # found chain 1p0yA in template set Warning: unaligning (T0547)K27 (1p0yA)K88 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1p0yA)D89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1p0yA)I90 because E (beta_S) conformation "forbidden" or filtered. T0547 22 :CINYE 1p0yA 83 :GLVAL T0547 30 :A 1p0yA 91 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=82360 # 2a7mA.22.73 read from T0547.t06.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)P29 (2a7mA)D81 because G (3-10) conformation "forbidden" or filtered. T0547 22 :CINYEKK 2a7mA 74 :LPKMTEE T0547 30 :A 2a7mA 82 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=82362 # 1wddA.23.41 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 23 :INYEKKPAI 1wddA 42 :VTPQPGVPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=82363 # 1b3aA.23.48 read from T0547.t06.many.frag # found chain 1b3aA in training set T0547 23 :INYEKKPAI 1b3aA 50 :CANPEKKWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82364 # 1tvxA.23.51 read from T0547.t06.many.frag # found chain 1tvxA in training set Warning: unaligning (T0547)K28 (1tvxA)A72 because P (beta_P) conformation "forbidden" or filtered. T0547 23 :INYEK 1tvxA 67 :CLDPD T0547 29 :PAI 1tvxA 73 :PRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=82366 # 1jb0D.23.55 read from T0547.t06.many.frag # found chain 1jb0D in template set T0547 23 :INYEKKPAI 1jb0D 56 :VYFARKEQC Number of specific fragments extracted= 1 number of extra gaps= 0 total=82367 # 7odcA.23.11 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N24 (7odcA)I13 because P (beta_P) conformation "forbidden" or filtered. T0547 23 :I 7odcA 12 :H T0547 25 :YEKKPAI 7odcA 14 :LDEGFTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=82369 # 1qwyA.23.35 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)P29 (1qwyA)W67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1qwyA)N68 because Y (epsilon') conformation "forbidden" or filtered. T0547 23 :INYEKK 1qwyA 61 :HTPDGN T0547 31 :I 1qwyA 69 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=82371 # 1cxqA.23.42 read from T0547.t06.many.frag # found chain 1cxqA in training set T0547 23 :INYEKKPAI 1cxqA 90 :VTQHGRVTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=82372 # 1vq2A.23.40 read from T0547.t06.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)I23 (1vq2A)G41 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N24 (1vq2A)S42 because P (beta_P) conformation "forbidden" or filtered. T0547 25 :YEKKPAI 1vq2A 43 :PAGGVNC Number of specific fragments extracted= 1 number of extra gaps= 1 total=82373 # 1ypqA.23.21 read from T0547.t06.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)K27 (1ypqA)G161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 23 :INYE 1ypqA 157 :LFSS T0547 28 :K 1ypqA 162 :S T0547 30 :AI 1ypqA 164 :NW Number of specific fragments extracted= 3 number of extra gaps= 2 total=82376 # 1qnaA.23.31 read from T0547.t06.many.frag # found chain 1qnaA in training set Warning: unaligning (T0547)K27 (1qnaA)C36 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1qnaA)L38 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYE 1qnaA 32 :VNLD T0547 28 :K 1qnaA 37 :K T0547 30 :AI 1qnaA 39 :DL Number of specific fragments extracted= 3 number of extra gaps= 2 total=82379 # 2b20A.23.185 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)N24 (2b20A)F184 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (2b20A)G187 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2b20A)V189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2b20A)E193 T0547 23 :I 2b20A 183 :I T0547 25 :YE 2b20A 185 :TT T0547 28 :K 2b20A 188 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=82382 # 1je5A.23.42 read from T0547.t06.many.frag # found chain 1je5A in template set T0547 23 :INYEKKPAI 1je5A 43 :TIPNKDPRC Number of specific fragments extracted= 1 number of extra gaps= 0 total=82383 # 2bopA.23.52 read from T0547.t06.many.frag # found chain 2bopA in training set T0547 23 :INYEKKPAI 2bopA 378 :ITFGSPSQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82384 # 1t77A.23.30 read from T0547.t06.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)N24 (1t77A)E2107 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :I 1t77A 2106 :F T0547 25 :YEKKPAI 1t77A 2108 :VDEEDPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=82386 # 1vs0A.23.48 read from T0547.t06.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)K28 (1vs0A)G503 because T (delta_L) conformation "forbidden" or filtered. T0547 23 :INYEK 1vs0A 498 :LRSRS T0547 29 :PAI 1vs0A 504 :RDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=82388 # 1flmA.23.45 read from T0547.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0547)N24 (1flmA)P47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1flmA)M51 because L (left) conformation "forbidden" or filtered. T0547 23 :I 1flmA 46 :V T0547 25 :YEK 1flmA 48 :VGG T0547 29 :PAI 1flmA 52 :HKT Number of specific fragments extracted= 3 number of extra gaps= 2 total=82391 # 1u9yA.23.38 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)P29 (1u9yA)I45 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYEKK 1u9yA 39 :VRIVDE T0547 30 :AI 1u9yA 46 :ND Number of specific fragments extracted= 2 number of extra gaps= 1 total=82393 # 1c1yB.23.15 read from T0547.t06.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)N24 (1c1yB)N71 because P (beta_P) conformation "forbidden" or filtered. T0547 23 :I 1c1yB 70 :V T0547 25 :YEKKPAI 1c1yB 72 :VRNGMSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=82395 # 2b8mA.23.59 read from T0547.t06.many.frag # found chain 2b8mA in training set Warning: unaligning (T0547)A30 (2b8mA)P66 because P (beta_P) conformation "forbidden" or filtered. T0547 23 :INYEKKP 2b8mA 59 :LTLEDQE T0547 31 :I 2b8mA 67 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=82397 # 1vqoS.23.66 read from T0547.t06.many.frag # found chain 1vqoS in template set Warning: unaligning (T0547)N24 (1vqoS)R67 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1vqoS)D72 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1vqoS)D73 because D (zeta) conformation "forbidden" or filtered. T0547 23 :I 1vqoS 66 :V T0547 25 :YEKK 1vqoS 68 :LSED T0547 31 :I 1vqoS 74 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=82400 # 1y0yA.23.86 read from T0547.t06.many.frag # found chain 1y0yA in training set Warning: unaligning (T0547)K27 (1y0yA)G91 because S (epsilon) conformation "forbidden" or filtered. T0547 23 :INYE 1y0yA 87 :VAPI T0547 28 :KPAI 1y0yA 92 :GVDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=82402 # 1y60A.23.25 read from T0547.t06.many.frag # found chain 1y60A in template set Warning: unaligning (T0547)N24 (1y60A)G28 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1y60A)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 23 :I 1y60A 27 :I T0547 25 :YE 1y60A 29 :PR T0547 28 :KPAI 1y60A 32 :SPAE Number of specific fragments extracted= 3 number of extra gaps= 2 total=82405 # 1zh1A.23.38 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)P29 (1zh1A)C80 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYEKK 1zh1A 74 :IVGPRT T0547 30 :AI 1zh1A 81 :SN Number of specific fragments extracted= 2 number of extra gaps= 1 total=82407 # 1t77A.23.31 read from T0547.t06.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)N24 (1t77A)V2108 because P (beta_P) conformation "forbidden" or filtered. T0547 23 :I 1t77A 2107 :E T0547 25 :YEKKPAI 1t77A 2109 :DEEDPNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=82409 # 1f3vA.23.19 read from T0547.t06.many.frag # found chain 1f3vA in template set T0547 23 :INYEKKPAI 1f3vA 20 :ESSLDKVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82410 # 1r0vA.23.95 read from T0547.t06.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)I23 because of BadResidue code BAD_PEPTIDE at template residue (1r0vA)I96 Warning: unaligning (T0547)K28 (1r0vA)T101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1r0vA)I102 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYEK 1r0vA 97 :SERK T0547 30 :AI 1r0vA 103 :RM Number of specific fragments extracted= 2 number of extra gaps= 2 total=82412 # 2a7mA.23.74 read from T0547.t06.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)P29 (2a7mA)D81 because G (3-10) conformation "forbidden" or filtered. T0547 23 :INYEKK 2a7mA 75 :PKMTEE T0547 30 :AI 2a7mA 82 :RI Number of specific fragments extracted= 2 number of extra gaps= 1 total=82414 # 1pmi.23.59 read from T0547.t06.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)K27 (1pmi)N65 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1pmi)N66 because L (left) conformation "forbidden" or filtered. T0547 23 :INYE 1pmi 61 :AIDL T0547 29 :PAI 1pmi 67 :QTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=82416 # 1chd.23.98 read from T0547.t06.many.frag # found chain 1chd in training set T0547 23 :INYEKKPAI 1chd 245 :IKIHDGPPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82417 # 1p0yA.23.39 read from T0547.t06.many.frag # found chain 1p0yA in template set Warning: unaligning (T0547)K28 (1p0yA)D89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1p0yA)I90 because E (beta_S) conformation "forbidden" or filtered. T0547 23 :INYEK 1p0yA 84 :LVALK T0547 30 :AI 1p0yA 91 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=82419 # 1wddA.24.42 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 24 :NYEKKPAII 1wddA 43 :TPQPGVPPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82420 # 1vq2A.24.41 read from T0547.t06.many.frag # found chain 1vq2A in template set T0547 24 :NYEKKPAII 1vq2A 42 :SPAGGVNCC Number of specific fragments extracted= 1 number of extra gaps= 0 total=82421 # 1b3aA.24.49 read from T0547.t06.many.frag # found chain 1b3aA in training set T0547 24 :NYEKKPAII 1b3aA 51 :ANPEKKWVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82422 # 1tvxA.24.52 read from T0547.t06.many.frag # found chain 1tvxA in training set Warning: unaligning (T0547)K28 (1tvxA)A72 because P (beta_P) conformation "forbidden" or filtered. T0547 24 :NYEK 1tvxA 68 :LDPD T0547 29 :PAII 1tvxA 73 :PRIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=82424 # 7odcA.24.12 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 24 :NYEKKPAII 7odcA 13 :ILDEGFTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82425 # 1f3vA.24.20 read from T0547.t06.many.frag # found chain 1f3vA in template set Warning: unaligning (T0547)K28 (1f3vA)K25 because T (delta_L) conformation "forbidden" or filtered. T0547 24 :NYEK 1f3vA 21 :SSLD T0547 29 :PAII 1f3vA 26 :VVLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=82427 # 1pmi.24.60 read from T0547.t06.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)K27 (1pmi)N65 because L (left) conformation "forbidden" or filtered. T0547 24 :NYE 1pmi 62 :IDL T0547 28 :KPAII 1pmi 66 :NQTLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=82429 # 1ypqA.24.22 read from T0547.t06.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 24 :NYEKK 1ypqA 158 :FSSGS T0547 30 :AII 1ypqA 164 :NWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=82431 # 1qnaA.24.32 read from T0547.t06.many.frag # found chain 1qnaA in training set Warning: unaligning (T0547)N24 (1qnaA)N33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E26 (1qnaA)D35 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1qnaA)C36 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1qnaA)L38 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :Y 1qnaA 34 :L T0547 28 :K 1qnaA 37 :K T0547 30 :AII 1qnaA 39 :DLK Number of specific fragments extracted= 3 number of extra gaps= 3 total=82434 # 1jb0D.24.56 read from T0547.t06.many.frag # found chain 1jb0D in template set Warning: unaligning (T0547)N24 (1jb0D)Y57 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YEKKPAII 1jb0D 58 :FARKEQCL Number of specific fragments extracted= 1 number of extra gaps= 1 total=82435 # 1c1yB.24.16 read from T0547.t06.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)K28 (1c1yB)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 24 :NYEK 1c1yB 71 :NVRN T0547 29 :PAII 1c1yB 76 :MSLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=82437 # 1je5A.24.43 read from T0547.t06.many.frag # found chain 1je5A in template set T0547 24 :NYEKKPAII 1je5A 44 :IPNKDPRCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82438 # 1r0vA.24.96 read from T0547.t06.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)K27 (1r0vA)K100 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1r0vA)I102 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYE 1r0vA 97 :SER T0547 28 :K 1r0vA 101 :T T0547 30 :AII 1r0vA 103 :RME Number of specific fragments extracted= 3 number of extra gaps= 2 total=82441 # 1m22A.24.19 read from T0547.t06.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)P29 (1m22A)L62 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYEKK 1m22A 57 :MTAGE T0547 30 :AII 1m22A 63 :DST Number of specific fragments extracted= 2 number of extra gaps= 1 total=82443 # 1pii.24.62 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1pii)D67 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)D67 Warning: unaligning (T0547)A30 (1pii)D69 because D (zeta) conformation "forbidden" or filtered. T0547 24 :NYE 1pii 63 :VIR T0547 29 :P 1pii 68 :F T0547 31 :II 1pii 70 :PA Number of specific fragments extracted= 3 number of extra gaps= 2 total=82446 # 1cxqA.24.43 read from T0547.t06.many.frag # found chain 1cxqA in training set T0547 24 :NYEKKPAII 1cxqA 91 :TQHGRVTSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82447 # 1qwyA.24.36 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)K27 (1qwyA)G65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1qwyA)W67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1qwyA)N68 because Y (epsilon') conformation "forbidden" or filtered. T0547 24 :NYE 1qwyA 62 :TPD T0547 28 :K 1qwyA 66 :N T0547 31 :II 1qwyA 69 :QA Number of specific fragments extracted= 3 number of extra gaps= 2 total=82450 # 1vqoS.24.67 read from T0547.t06.many.frag # found chain 1vqoS in template set Warning: unaligning (T0547)E26 (1vqoS)S69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1vqoS)D72 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1vqoS)D73 because D (zeta) conformation "forbidden" or filtered. T0547 24 :NY 1vqoS 67 :RL T0547 27 :KK 1vqoS 70 :ED T0547 31 :II 1vqoS 74 :AQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=82453 # 1flmA.24.46 read from T0547.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0547)K28 (1flmA)M51 because L (left) conformation "forbidden" or filtered. T0547 24 :NYEK 1flmA 47 :PVGG T0547 29 :PAII 1flmA 52 :HKTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=82455 # 2af4C.24.21 read from T0547.t06.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K27 (2af4C)E25 because G (3-10) conformation "forbidden" or filtered. T0547 24 :NYE 2af4C 22 :PET T0547 28 :KPAII 2af4C 26 :DIRTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=82457 # 2b20A.24.186 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)K27 (2b20A)G187 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2b20A)V189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2b20A)E193 T0547 24 :NYE 2b20A 184 :FTT T0547 28 :K 2b20A 188 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=82459 # 1y60A.24.26 read from T0547.t06.many.frag # found chain 1y60A in template set Warning: unaligning (T0547)N24 (1y60A)G28 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YEKKPAII 1y60A 29 :PRGSPAET Number of specific fragments extracted= 1 number of extra gaps= 1 total=82460 # 1t77A.24.32 read from T0547.t06.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)K28 (1t77A)D2112 because P (beta_P) conformation "forbidden" or filtered. T0547 24 :NYEK 1t77A 2108 :VDEE T0547 29 :PAII 1t77A 2113 :PNFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=82462 # 1zh1A.24.39 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)P29 (1zh1A)C80 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYEKK 1zh1A 75 :VGPRT T0547 30 :AII 1zh1A 81 :SNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=82464 # 1t77A.24.31 read from T0547.t06.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)E26 (1t77A)D2109 because N (gamma') conformation "forbidden" or filtered. T0547 24 :NY 1t77A 2107 :EV T0547 27 :KKPAII 1t77A 2110 :EEDPNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=82466 # 2bopA.24.53 read from T0547.t06.many.frag # found chain 2bopA in training set Warning: unaligning (T0547)K27 (2bopA)S382 because Y (epsilon') conformation "forbidden" or filtered. T0547 24 :NYE 2bopA 379 :TFG T0547 28 :KPAII 2bopA 383 :PSQRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=82468 # 1h16A.24.17 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)A30 (1h16A)N24 because D (zeta) conformation "forbidden" or filtered. T0547 24 :NYEKKP 1h16A 18 :DWQNEV T0547 31 :II 1h16A 25 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=82470 # 1vrmA.24.33 read from T0547.t06.many.frag # found chain 1vrmA in training set Warning: unaligning (T0547)P29 (1vrmA)I66 because E (beta_S) conformation "forbidden" or filtered. T0547 24 :NYEKK 1vrmA 61 :VSSQK T0547 30 :AII 1vrmA 67 :NPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=82472 # 1km4A.24.19 read from T0547.t06.many.frag # found chain 1km4A in template set T0547 24 :NYEKKPAII 1km4A 20 :DLMNRDDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82473 # 1sedA.24.23 read from T0547.t06.many.frag # found chain 1sedA in template set Warning: unaligning (T0547)P29 (1sedA)Y27 because D (zeta) conformation "forbidden" or filtered. T0547 24 :NYEKK 1sedA 22 :VDMDR T0547 30 :AII 1sedA 28 :PFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=82475 # 1vq2A.25.42 read from T0547.t06.many.frag # found chain 1vq2A in template set T0547 25 :YEKKPAIID 1vq2A 43 :PAGGVNCCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82476 # 1wddA.25.43 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 25 :YEKKPAIID 1wddA 44 :PQPGVPPEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82477 # 7odcA.25.13 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 25 :YEKKPAIID 7odcA 14 :LDEGFTAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82478 # 1b3aA.25.50 read from T0547.t06.many.frag # found chain 1b3aA in training set T0547 25 :YEKKPAIID 1b3aA 52 :NPEKKWVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82479 # 1tvxA.25.53 read from T0547.t06.many.frag # found chain 1tvxA in training set Warning: unaligning (T0547)K28 (1tvxA)A72 because P (beta_P) conformation "forbidden" or filtered. T0547 25 :YEK 1tvxA 69 :DPD T0547 29 :PAIID 1tvxA 73 :PRIKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=82481 # 1f3vA.25.21 read from T0547.t06.many.frag # found chain 1f3vA in template set Warning: unaligning (T0547)E26 (1f3vA)L23 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1f3vA)K25 because T (delta_L) conformation "forbidden" or filtered. T0547 25 :Y 1f3vA 22 :S T0547 27 :K 1f3vA 24 :D T0547 29 :PAIID 1f3vA 26 :VVLSD Number of specific fragments extracted= 3 number of extra gaps= 2 total=82484 # 1ypqA.25.23 read from T0547.t06.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)K27 (1ypqA)G161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 25 :YE 1ypqA 159 :SS T0547 28 :K 1ypqA 162 :S T0547 30 :AIID 1ypqA 164 :NWEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=82487 # 1pmi.25.61 read from T0547.t06.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)K27 (1pmi)N65 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1pmi)N66 because L (left) conformation "forbidden" or filtered. T0547 25 :YE 1pmi 63 :DL T0547 29 :PAIID 1pmi 67 :QTLRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=82489 # 1c1yB.25.17 read from T0547.t06.many.frag # found chain 1c1yB in template set T0547 25 :YEKKPAIID 1c1yB 72 :VRNGMSLHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82490 # 1jb0D.25.57 read from T0547.t06.many.frag # found chain 1jb0D in template set T0547 25 :YEKKPAIID 1jb0D 58 :FARKEQCLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82491 # 1pii.25.63 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1pii)D67 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)D67 Warning: unaligning (T0547)A30 (1pii)D69 because D (zeta) conformation "forbidden" or filtered. T0547 25 :YE 1pii 64 :IR T0547 29 :P 1pii 68 :F T0547 31 :IID 1pii 70 :PAR Number of specific fragments extracted= 3 number of extra gaps= 2 total=82494 # 1h16A.25.18 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)K27 (1h16A)N21 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1h16A)E22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1h16A)N24 because D (zeta) conformation "forbidden" or filtered. T0547 25 :YE 1h16A 19 :WQ T0547 29 :P 1h16A 23 :V T0547 31 :IID 1h16A 25 :VRD Number of specific fragments extracted= 3 number of extra gaps= 2 total=82497 # 1m22A.25.20 read from T0547.t06.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)K27 (1m22A)G60 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1m22A)L62 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YE 1m22A 58 :TA T0547 28 :K 1m22A 61 :E T0547 30 :AIID 1m22A 63 :DSTT Number of specific fragments extracted= 3 number of extra gaps= 2 total=82500 # 2a7mA.25.76 read from T0547.t06.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)P29 (2a7mA)D81 because G (3-10) conformation "forbidden" or filtered. T0547 25 :YEKK 2a7mA 77 :MTEE T0547 30 :AIID 2a7mA 82 :RIVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=82502 # 1tzvA.25.20 read from T0547.t06.many.frag # found chain 1tzvA in training set Warning: unaligning (T0547)E26 (1tzvA)R22 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1tzvA)E25 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1tzvA)D26 because P (beta_P) conformation "forbidden" or filtered. T0547 25 :Y 1tzvA 21 :F T0547 27 :KK 1tzvA 23 :RD T0547 31 :IID 1tzvA 27 :LEQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=82505 # 1je5A.25.44 read from T0547.t06.many.frag # found chain 1je5A in template set Warning: unaligning (T0547)K28 (1je5A)D48 because P (beta_P) conformation "forbidden" or filtered. T0547 25 :YEK 1je5A 45 :PNK T0547 29 :PAIID 1je5A 49 :PRCQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=82507 # 2af4C.25.22 read from T0547.t06.many.frag # found chain 2af4C in template set T0547 25 :YEKKPAIID 2af4C 23 :ETEDIRTLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82508 # 1km4A.25.20 read from T0547.t06.many.frag # found chain 1km4A in template set T0547 25 :YEKKPAIID 1km4A 21 :LMNRDDALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82509 # 1qnaA.25.33 read from T0547.t06.many.frag # found chain 1qnaA in training set Warning: unaligning (T0547)E26 (1qnaA)D35 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1qnaA)L38 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :Y 1qnaA 34 :L T0547 27 :KK 1qnaA 36 :CK T0547 30 :AIID 1qnaA 39 :DLKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=82512 # 1rlr.25.95 read from T0547.t06.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)Y25 (1rlr)Q96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1rlr)P99 because P (beta_P) conformation "forbidden" or filtered. T0547 26 :EK 1rlr 97 :FE T0547 29 :PAIID 1rlr 100 :PALYD Number of specific fragments extracted= 2 number of extra gaps= 2 total=82514 # 2bogX.25.6 read from T0547.t06.many.frag # found chain 2bogX in training set T0547 25 :YEKKPAIID 2bogX 7 :VNPNMSSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82515 # 1wb4A.25.85 read from T0547.t06.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)E26 (1wb4A)S875 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1wb4A)K879 because L (left) conformation "forbidden" or filtered. T0547 25 :Y 1wb4A 874 :F T0547 27 :KKP 1wb4A 876 :NDV T0547 31 :IID 1wb4A 880 :LQN Number of specific fragments extracted= 3 number of extra gaps= 2 total=82518 # 1flmA.25.47 read from T0547.t06.many.frag # found chain 1flmA in training set T0547 25 :YEKKPAIID 1flmA 48 :VGGMHKTEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82519 # 1vjxA.25.8 read from T0547.t06.many.frag # found chain 1vjxA in template set Warning: unaligning (T0547)Y25 because first residue in template chain is (1vjxA)H-3 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vjxA)H-2 Warning: unaligning (T0547)K28 (1vjxA)H0 because L (left) conformation "forbidden" or filtered. T0547 27 :K 1vjxA -1 :H T0547 29 :PAIID 1vjxA 1 :MKVSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=82521 # 2aqlA.25.33 read from T0547.t06.many.frag # found chain 2aqlA in template set Warning: unaligning (T0547)Y25 because of BadResidue code BAD_PEPTIDE in next template residue (2aqlA)P185 Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE at template residue (2aqlA)P185 Warning: unaligning (T0547)K27 (2aqlA)A186 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (2aqlA)K188 because D (zeta) conformation "forbidden" or filtered. T0547 28 :K 2aqlA 187 :K T0547 30 :AIID 2aqlA 189 :NVDS Number of specific fragments extracted= 2 number of extra gaps= 2 total=82523 # 1p1jA.25.147 read from T0547.t06.many.frag # found chain 1p1jA in training set T0547 25 :YEKKPAIID 1p1jA 148 :DINNADLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82524 # 1qlwA.25.81 read from T0547.t06.many.frag # found chain 1qlwA in training set T0547 25 :YEKKPAIID 1qlwA 82 :PDGRMGWDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82525 # 1vrmA.25.34 read from T0547.t06.many.frag # found chain 1vrmA in training set Warning: unaligning (T0547)P29 (1vrmA)I66 because E (beta_S) conformation "forbidden" or filtered. T0547 25 :YEKK 1vrmA 62 :SSQK T0547 30 :AIID 1vrmA 67 :NPRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=82527 # 1yiiA.25.9 read from T0547.t06.many.frag # found chain 1yiiA in training set Warning: unaligning (T0547)K28 (1yiiA)P14 because C (cis) conformation "forbidden" or filtered. T0547 25 :YEK 1yiiA 11 :AFS T0547 29 :PAIID 1yiiA 15 :FDARA Number of specific fragments extracted= 2 number of extra gaps= 1 total=82529 # 1vctA.25.7 read from T0547.t06.many.frag # found chain 1vctA in template set Warning: unaligning (T0547)E26 because first residue in template chain is (1vctA)Y9 Warning: unaligning (T0547)K27 (1vctA)E10 because P (beta_P) conformation "forbidden" or filtered. T0547 28 :KPAIID 1vctA 11 :PKSVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82530 # 1vq2A.26.43 read from T0547.t06.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)K27 (1vq2A)G45 because T (delta_L) conformation "forbidden" or filtered. T0547 26 :E 1vq2A 44 :A T0547 28 :KPAIIDI 1vq2A 46 :GVNCCDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=82532 # 1ypqA.26.24 read from T0547.t06.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 26 :EKK 1ypqA 160 :SGS T0547 30 :AIIDI 1ypqA 164 :NWEKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=82534 # 7odcA.26.14 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K28 (7odcA)G17 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (7odcA)T19 because E (beta_S) conformation "forbidden" or filtered. T0547 26 :EK 7odcA 15 :DE T0547 29 :P 7odcA 18 :F T0547 31 :IIDI 7odcA 20 :AKDI Number of specific fragments extracted= 3 number of extra gaps= 2 total=82537 # 1pmi.26.62 read from T0547.t06.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)K27 (1pmi)N65 because L (left) conformation "forbidden" or filtered. T0547 26 :E 1pmi 64 :L T0547 28 :KPAIIDI 1pmi 66 :NQTLRDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=82539 # 1tvxA.26.54 read from T0547.t06.many.frag # found chain 1tvxA in training set Warning: unaligning (T0547)K28 (1tvxA)A72 because P (beta_P) conformation "forbidden" or filtered. T0547 26 :EK 1tvxA 70 :PD T0547 29 :PAIIDI 1tvxA 73 :PRIKKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=82541 # 1f3vA.26.22 read from T0547.t06.many.frag # found chain 1f3vA in template set T0547 26 :EKKPAIIDI 1f3vA 23 :LDKVVLSDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82542 # 1h16A.26.19 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)K28 (1h16A)E22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1h16A)N24 because D (zeta) conformation "forbidden" or filtered. T0547 26 :EK 1h16A 20 :QN T0547 29 :P 1h16A 23 :V T0547 31 :IIDI 1h16A 25 :VRDF Number of specific fragments extracted= 3 number of extra gaps= 2 total=82545 # 1tzvA.26.21 read from T0547.t06.many.frag # found chain 1tzvA in training set Warning: unaligning (T0547)P29 (1tzvA)E25 because E (beta_S) conformation "forbidden" or filtered. T0547 26 :EKK 1tzvA 22 :RRD T0547 30 :AIIDI 1tzvA 26 :DLEQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=82547 # 1pii.26.64 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1pii)D67 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)D67 Warning: unaligning (T0547)A30 (1pii)D69 because D (zeta) conformation "forbidden" or filtered. T0547 26 :E 1pii 65 :R T0547 29 :P 1pii 68 :F T0547 31 :IIDI 1pii 70 :PARI Number of specific fragments extracted= 3 number of extra gaps= 2 total=82550 # 1c1yB.26.18 read from T0547.t06.many.frag # found chain 1c1yB in template set T0547 26 :EKKPAIIDI 1c1yB 73 :RNGMSLHDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=82551 # 1rlr.26.96 read from T0547.t06.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)A30 (1rlr)A101 because P (beta_P) conformation "forbidden" or filtered. T0547 26 :EKKP 1rlr 97 :FEPP T0547 31 :IIDI 1rlr 102 :LYDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=82553 # 1wddA.26.44 read from T0547.t06.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)E26 (1wddA)Q45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1wddA)P46 because P (beta_P) conformation "forbidden" or filtered. T0547 28 :KPAIIDI 1wddA 47 :GVPPEEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=82554 # 1b3aA.26.51 read from T0547.t06.many.frag # found chain 1b3aA in training set T0547 26 :EKKPAIIDI 1b3aA 53 :PEKKWVREY Number of specific fragments extracted= 1 number of extra gaps= 0 total=82555 # 1km4A.26.21 read from T0547.t06.many.frag # found chain 1km4A in template set T0547 26 :EKKPAIIDI 1km4A 22 :MNRDDALRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82556 # 2aqlA.26.34 read from T0547.t06.many.frag # found chain 2aqlA in template set Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE at template residue (2aqlA)P185 Warning: unaligning (T0547)P29 (2aqlA)K188 because D (zeta) conformation "forbidden" or filtered. T0547 27 :KK 2aqlA 186 :AK T0547 30 :AIIDI 2aqlA 189 :NVDSI Number of specific fragments extracted= 2 number of extra gaps= 2 total=82558 # 1jx4A.26.55 read from T0547.t06.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)E26 (1jx4A)K56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1jx4A)G58 because T (delta_L) conformation "forbidden" or filtered. T0547 27 :K 1jx4A 57 :A T0547 29 :PAIIDI 1jx4A 59 :IPIVEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=82560 # 1vjxA.26.9 read from T0547.t06.many.frag # found chain 1vjxA in template set Warning: unaligning (T0547)E26 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vjxA)H-2 Warning: unaligning (T0547)K28 (1vjxA)H0 because L (left) conformation "forbidden" or filtered. T0547 27 :K 1vjxA -1 :H T0547 29 :PAIIDI 1vjxA 1 :MKVSDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=82562 # 1wb4A.26.86 read from T0547.t06.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)A30 (1wb4A)K879 because L (left) conformation "forbidden" or filtered. T0547 26 :EKKP 1wb4A 875 :SNDV T0547 31 :IIDI 1wb4A 880 :LQNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=82564 # 1m22A.26.21 read from T0547.t06.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)K27 (1m22A)G60 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1m22A)L62 because E (beta_S) conformation "forbidden" or filtered. T0547 26 :E 1m22A 59 :A T0547 28 :K 1m22A 61 :E T0547 30 :AIIDI 1m22A 63 :DSTTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=82567 # 2a7mA.26.77 read from T0547.t06.many.frag # found chain 2a7mA in training set Warning: unaligning (T0547)P29 (2a7mA)D81 because G (3-10) conformation "forbidden" or filtered. T0547 26 :EKK 2a7mA 78 :TEE T0547 30 :AIIDI 2a7mA 82 :RIVNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=82569 # 2fupA.26.13 read from T0547.t06.many.frag # found chain 2fupA in training set Warning: unaligning (T0547)E26 (2fupA)P2 because P (beta_P) conformation "forbidden" or filtered. T0547 27 :KKPAIIDI 2fupA 3 :DSPTLLDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=82570 # 1p1jA.26.148 read from T0547.t06.many.frag # found chain 1p1jA in training set T0547 26 :EKKPAIIDI 1p1jA 149 :INNADLYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82571 # 1vctA.26.8 read from T0547.t06.many.frag # found chain 1vctA in template set Warning: unaligning (T0547)E26 because first residue in template chain is (1vctA)Y9 Warning: unaligning (T0547)K27 (1vctA)E10 because P (beta_P) conformation "forbidden" or filtered. T0547 28 :KPAIIDI 1vctA 11 :PKSVKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=82572 # 1jb0D.26.58 read from T0547.t06.many.frag # found chain 1jb0D in template set T0547 26 :EKKPAIIDI 1jb0D 59 :ARKEQCLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82573 # 1fm0D.26.22 read from T0547.t06.many.frag # found chain 1fm0D in training set Warning: unaligning (T0547)A30 (1fm0D)T27 because Y (epsilon') conformation "forbidden" or filtered. T0547 26 :EKKP 1fm0D 23 :ADFP T0547 31 :IIDI 1fm0D 28 :VEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=82575 # 1vefA.26.60 read from T0547.t06.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)E26 (1vefA)H61 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K27 (1vefA)G62 because L (left) conformation "forbidden" or filtered. T0547 28 :KPAIIDI 1vefA 63 :NPEVVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=82576 # 2bogX.26.7 read from T0547.t06.many.frag # found chain 2bogX in training set T0547 26 :EKKPAIIDI 2bogX 8 :NPNMSSAEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=82577 # 1tbxA.26.19 read from T0547.t06.many.frag # found chain 1tbxA in template set T0547 26 :EKKPAIIDI 1tbxA 20 :NEGIATYDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82578 # 1vrmA.26.35 read from T0547.t06.many.frag # found chain 1vrmA in training set Warning: unaligning (T0547)P29 (1vrmA)I66 because E (beta_S) conformation "forbidden" or filtered. T0547 26 :EKK 1vrmA 63 :SQK T0547 30 :AIIDI 1vrmA 67 :NPRTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=82580 # 1yiiA.26.10 read from T0547.t06.many.frag # found chain 1yiiA in training set Warning: unaligning (T0547)K28 (1yiiA)P14 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1yiiA)D16 because D (zeta) conformation "forbidden" or filtered. T0547 26 :EK 1yiiA 12 :FS T0547 29 :P 1yiiA 15 :F T0547 31 :IIDI 1yiiA 17 :ARAD Number of specific fragments extracted= 3 number of extra gaps= 2 total=82583 # 1vq2A.27.44 read from T0547.t06.many.frag # found chain 1vq2A in template set T0547 27 :KKPAIIDIV 1vq2A 45 :GGVNCCDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82584 # 1rlr.27.97 read from T0547.t06.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)A30 (1rlr)A101 because P (beta_P) conformation "forbidden" or filtered. T0547 27 :KKP 1rlr 98 :EPP T0547 31 :IIDIV 1rlr 102 :LYDHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=82586 # 1pii.27.65 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)K27 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1pii)D67 Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)D67 Warning: unaligning (T0547)A30 (1pii)D69 because D (zeta) conformation "forbidden" or filtered. T0547 29 :P 1pii 68 :F T0547 31 :IIDIV 1pii 70 :PARIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=82588 # 1h16A.27.20 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)K28 (1h16A)E22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1h16A)N24 because D (zeta) conformation "forbidden" or filtered. T0547 27 :K 1h16A 21 :N T0547 29 :P 1h16A 23 :V T0547 31 :IIDIV 1h16A 25 :VRDFI Number of specific fragments extracted= 3 number of extra gaps= 2 total=82591 # 1tzvA.27.22 read from T0547.t06.many.frag # found chain 1tzvA in training set Warning: unaligning (T0547)P29 (1tzvA)E25 because E (beta_S) conformation "forbidden" or filtered. T0547 27 :KK 1tzvA 23 :RD T0547 30 :AIIDIV 1tzvA 26 :DLEQIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=82593 # 1ypqA.27.25 read from T0547.t06.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 27 :KK 1ypqA 161 :GS T0547 30 :AIIDIV 1ypqA 164 :NWEKSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=82595 # 7odcA.27.15 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 27 :KKPAIIDIV 7odcA 16 :EGFTAKDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82596 # 1f3vA.27.23 read from T0547.t06.many.frag # found chain 1f3vA in template set Warning: unaligning (T0547)K28 (1f3vA)K25 because T (delta_L) conformation "forbidden" or filtered. T0547 27 :K 1f3vA 24 :D T0547 29 :PAIIDIV 1f3vA 26 :VVLSDAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=82598 # 1pmi.27.63 read from T0547.t06.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)K27 (1pmi)N65 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K28 (1pmi)N66 because L (left) conformation "forbidden" or filtered. T0547 29 :PAIIDIV 1pmi 67 :QTLRDLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=82599 # 1iomA.27.29 read from T0547.t06.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)K27 (1iomA)Y30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1iomA)P33 because P (beta_P) conformation "forbidden" or filtered. T0547 28 :KP 1iomA 31 :GI T0547 31 :IIDIV 1iomA 34 :IQELA Number of specific fragments extracted= 2 number of extra gaps= 2 total=82601 # 1vjxA.27.10 read from T0547.t06.many.frag # found chain 1vjxA in template set T0547 27 :KKPAIIDIV 1vjxA -1 :HHMKVSDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82602 # 1tvxA.27.55 read from T0547.t06.many.frag # found chain 1tvxA in training set T0547 27 :KKPAIIDIV 1tvxA 71 :DAPRIKKIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82603 # 1km4A.27.22 read from T0547.t06.many.frag # found chain 1km4A in template set T0547 27 :KKPAIIDIV 1km4A 23 :NRDDALRVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=82604 # 1vctA.27.9 read from T0547.t06.many.frag # found chain 1vctA in template set T0547 27 :KKPAIIDIV 1vctA 10 :EPKSVKEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=82605 # 1p1jA.27.149 read from T0547.t06.many.frag # found chain 1p1jA in training set T0547 27 :KKPAIIDIV 1p1jA 150 :NNADLYEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=82606 # 1vrmA.27.36 read from T0547.t06.many.frag # found chain 1vrmA in training set Warning: unaligning (T0547)P29 (1vrmA)I66 because E (beta_S) conformation "forbidden" or filtered. T0547 27 :KK 1vrmA 64 :QK T0547 30 :AIIDIV 1vrmA 67 :NPRTIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=82608 # 1jx4A.27.56 read from T0547.t06.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)K28 (1jx4A)G58 because T (delta_L) conformation "forbidden" or filtered. T0547 27 :K 1jx4A 57 :A T0547 29 :PAIIDIV 1jx4A 59 :IPIVEAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=82610 # 1tbxA.27.20 read from T0547.t06.many.frag # found chain 1tbxA in template set Warning: unaligning (T0547)A30 (1tbxA)A24 because P (beta_P) conformation "forbidden" or filtered. T0547 27 :KKP 1tbxA 21 :EGI T0547 31 :IIDIV 1tbxA 25 :TYDLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=82612 # 2aqlA.27.35 read from T0547.t06.many.frag # found chain 2aqlA in template set Warning: unaligning (T0547)P29 (2aqlA)K188 because D (zeta) conformation "forbidden" or filtered. T0547 27 :KK 2aqlA 186 :AK T0547 30 :AIIDIV 2aqlA 189 :NVDSIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=82614 # 1thfD.27.27 read from T0547.t06.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)P29 (1thfD)G30 because G (3-10) conformation "forbidden" or filtered. T0547 27 :KK 1thfD 28 :DS T0547 30 :AIIDIV 1thfD 31 :DPVELG Number of specific fragments extracted= 2 number of extra gaps= 1 total=82616 # 1m5wA.27.22 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 27 :KKPAIIDIV 1m5wA 23 :AYPDPVQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82617 # 1tyv.27.16 read from T0547.t06.many.frag # found chain 1tyv in training set T0547 27 :KKPAIIDIV 1tyv 129 :DYPTLQDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82618 # 1wb4A.27.87 read from T0547.t06.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)A30 (1wb4A)K879 because L (left) conformation "forbidden" or filtered. T0547 27 :KKP 1wb4A 876 :NDV T0547 31 :IIDIV 1wb4A 880 :LQNIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=82620 # 2bogX.27.8 read from T0547.t06.many.frag # found chain 2bogX in training set T0547 27 :KKPAIIDIV 2bogX 9 :PNMSSAEWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82621 # 1vcc.27.22 read from T0547.t06.many.frag # found chain 1vcc in training set T0547 27 :KKPAIIDIV 1vcc 23 :DDNPAYEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82622 # 2fupA.27.14 read from T0547.t06.many.frag # found chain 2fupA in training set T0547 27 :KKPAIIDIV 2fupA 3 :DSPTLLDLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=82623 # 1io0A.27.19 read from T0547.t06.many.frag # found chain 1io0A in training set Warning: unaligning (T0547)K27 because first residue in template chain is (1io0A)N179 T0547 28 :KPAIIDIV 1io0A 180 :STDVEETL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82624 # 1c1yB.27.19 read from T0547.t06.many.frag # found chain 1c1yB in template set T0547 27 :KKPAIIDIV 1c1yB 74 :NGMSLHDCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82625 # 1yiiA.27.11 read from T0547.t06.many.frag # found chain 1yiiA in training set Warning: unaligning (T0547)K28 (1yiiA)P14 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1yiiA)D16 because D (zeta) conformation "forbidden" or filtered. T0547 27 :K 1yiiA 13 :S T0547 29 :P 1yiiA 15 :F T0547 31 :IIDIV 1yiiA 17 :ARADA Number of specific fragments extracted= 3 number of extra gaps= 2 total=82628 # 1m22A.27.22 read from T0547.t06.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)K27 (1m22A)G60 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P29 (1m22A)L62 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :K 1m22A 61 :E T0547 30 :AIIDIV 1m22A 63 :DSTTLT Number of specific fragments extracted= 2 number of extra gaps= 2 total=82630 # 1rlr.28.98 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 28 :KPAIIDIVK 1rlr 99 :PPALYDHVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82631 # 1pii.28.66 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)K28 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)D67 Warning: unaligning (T0547)A30 (1pii)D69 because D (zeta) conformation "forbidden" or filtered. T0547 29 :P 1pii 68 :F T0547 31 :IIDIVK 1pii 70 :PARIAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=82633 # 1h16A.28.21 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)K28 (1h16A)E22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1h16A)N24 because D (zeta) conformation "forbidden" or filtered. T0547 29 :P 1h16A 23 :V T0547 31 :IIDIVK 1h16A 25 :VRDFIQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=82635 # 1tzvA.28.23 read from T0547.t06.many.frag # found chain 1tzvA in training set Warning: unaligning (T0547)P29 (1tzvA)E25 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :K 1tzvA 24 :D T0547 30 :AIIDIVK 1tzvA 26 :DLEQILE Number of specific fragments extracted= 2 number of extra gaps= 1 total=82637 # 1vq2A.28.45 read from T0547.t06.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)A30 (1vq2A)N48 because P (beta_P) conformation "forbidden" or filtered. T0547 28 :KP 1vq2A 46 :GV T0547 31 :IIDIVK 1vq2A 49 :CCDYAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=82639 # 1tvxA.28.56 read from T0547.t06.many.frag # found chain 1tvxA in training set T0547 28 :KPAIIDIVK 1tvxA 72 :APRIKKIVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82640 # 1km4A.28.23 read from T0547.t06.many.frag # found chain 1km4A in template set T0547 28 :KPAIIDIVK 1km4A 24 :RDDALRVTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82641 # 1ypqA.28.26 read from T0547.t06.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :K 1ypqA 162 :S T0547 30 :AIIDIVK 1ypqA 164 :NWEKSQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=82643 # 1yzyA.28.148 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)P29 (1yzyA)A149 because G (3-10) conformation "forbidden" or filtered. T0547 28 :K 1yzyA 148 :D T0547 30 :AIIDIVK 1yzyA 150 :NLMRLMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=82645 # 1pmi.28.64 read from T0547.t06.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)K28 (1pmi)N66 because L (left) conformation "forbidden" or filtered. T0547 29 :PAIIDIVK 1pmi 67 :QTLRDLVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=82646 # 1thfD.28.28 read from T0547.t06.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)P29 (1thfD)G30 because G (3-10) conformation "forbidden" or filtered. T0547 28 :K 1thfD 29 :S T0547 30 :AIIDIVK 1thfD 31 :DPVELGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=82648 # 2aqlA.28.36 read from T0547.t06.many.frag # found chain 2aqlA in template set Warning: unaligning (T0547)P29 (2aqlA)K188 because D (zeta) conformation "forbidden" or filtered. T0547 28 :K 2aqlA 187 :K T0547 30 :AIIDIVK 2aqlA 189 :NVDSILE Number of specific fragments extracted= 2 number of extra gaps= 1 total=82650 # 1hq1A.28.0 read from T0547.t06.many.frag # found chain 1hq1A in training set Warning: unaligning (T0547)K28 because first residue in template chain is (1hq1A)G1 Warning: unaligning (T0547)A30 (1hq1A)D3 because Y (epsilon') conformation "forbidden" or filtered. T0547 29 :P 1hq1A 2 :F T0547 31 :IIDIVK 1hq1A 4 :LNDFLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=82652 # 1tbxA.28.21 read from T0547.t06.many.frag # found chain 1tbxA in template set T0547 28 :KPAIIDIVK 1tbxA 22 :GIATYDLYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82653 # 7odcA.28.16 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 28 :KPAIIDIVK 7odcA 17 :GFTAKDILD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82654 # 1fm0D.28.24 read from T0547.t06.many.frag # found chain 1fm0D in training set Warning: unaligning (T0547)A30 (1fm0D)T27 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :KP 1fm0D 25 :FP T0547 31 :IIDIVK 1fm0D 28 :VEALRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=82656 # 2fupA.28.15 read from T0547.t06.many.frag # found chain 2fupA in training set Warning: unaligning (T0547)K28 (2fupA)S4 because P (beta_P) conformation "forbidden" or filtered. T0547 29 :PAIIDIVK 2fupA 5 :PTLLDLFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=82657 # 1m22A.28.9 read from T0547.t06.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)K28 (1m22A)E47 because L (left) conformation "forbidden" or filtered. T0547 29 :PAIIDIVK 1m22A 48 :TDVADLQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=82658 # 1tyv.28.17 read from T0547.t06.many.frag # found chain 1tyv in training set T0547 28 :KPAIIDIVK 1tyv 130 :YPTLQDAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=82659 # 1jx4A.28.57 read from T0547.t06.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)K28 (1jx4A)G58 because T (delta_L) conformation "forbidden" or filtered. T0547 29 :PAIIDIVK 1jx4A 59 :IPIVEAKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=82660 # 1io0A.28.20 read from T0547.t06.many.frag # found chain 1io0A in training set T0547 28 :KPAIIDIVK 1io0A 180 :STDVEETLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82661 # 2nlrA.28.172 read from T0547.t06.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)P29 (2nlrA)F174 because Y (epsilon') conformation "forbidden" or filtered. T0547 28 :K 2nlrA 173 :S T0547 30 :AIIDIVK 2nlrA 175 :DVMDFVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=82663 # 1f3vA.28.24 read from T0547.t06.many.frag # found chain 1f3vA in template set T0547 28 :KPAIIDIVK 1f3vA 25 :KVVLSDAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82664 # 1iomA.28.30 read from T0547.t06.many.frag # found chain 1iomA in training set T0547 28 :KPAIIDIVK 1iomA 31 :GIPIQELAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82665 # 1yc9A.28.31 read from T0547.t06.many.frag # found chain 1yc9A in training set Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE in next template residue (1yc9A)Q76 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1yc9A)Q76 T0547 28 :K 1yc9A 74 :D T0547 31 :IIDIVK 1yc9A 77 :LNHLIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=82667 # 1m5wA.28.23 read from T0547.t06.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)P29 (1m5wA)P25 because C (cis) conformation "forbidden" or filtered. T0547 28 :K 1m5wA 24 :Y T0547 30 :AIIDIVK 1m5wA 26 :DPVQAAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=82669 # 1iuqA.28.12 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 28 :KPAIIDIVK 1iuqA 14 :EEELLSCIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82670 # 1vefA.28.62 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 28 :KPAIIDIVK 1vefA 63 :NPEVVEAVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82671 # 1g60A.28.8 read from T0547.t06.many.frag # found chain 1g60A in template set Warning: unaligning (T0547)P29 (1g60A)M10 because E (beta_S) conformation "forbidden" or filtered. T0547 28 :K 1g60A 9 :Q T0547 30 :AIIDIVK 1g60A 11 :NCFDFLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=82673 # 1sz2A.28.48 read from T0547.t06.many.frag # found chain 1sz2A in template set T0547 28 :KPAIIDIVK 1sz2A 38 :YPSLEAVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82674 # 1rlr.29.99 read from T0547.t06.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)A30 (1rlr)A101 because P (beta_P) conformation "forbidden" or filtered. T0547 29 :P 1rlr 100 :P T0547 31 :IIDIVKE 1rlr 102 :LYDHVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=82676 # 1tzvA.29.24 read from T0547.t06.many.frag # found chain 1tzvA in training set Warning: unaligning (T0547)P29 (1tzvA)E25 because E (beta_S) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1tzvA 26 :DLEQILEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=82677 # 1tbxA.29.22 read from T0547.t06.many.frag # found chain 1tbxA in template set T0547 29 :PAIIDIVKE 1tbxA 23 :IATYDLYKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82678 # 1pii.29.67 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)A30 (1pii)D69 because D (zeta) conformation "forbidden" or filtered. T0547 29 :P 1pii 68 :F T0547 31 :IIDIVKE 1pii 70 :PARIAAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=82680 # 1km4A.29.24 read from T0547.t06.many.frag # found chain 1km4A in template set T0547 29 :PAIIDIVKE 1km4A 25 :DDALRVTGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82681 # 1yzyA.29.149 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)P29 (1yzyA)A149 because G (3-10) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1yzyA 150 :NLMRLMDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=82682 # 1tvxA.29.57 read from T0547.t06.many.frag # found chain 1tvxA in training set T0547 29 :PAIIDIVKE 1tvxA 73 :PRIKKIVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82683 # 1vefA.29.63 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 29 :PAIIDIVKE 1vefA 64 :PEVVEAVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82684 # 1fm0D.29.25 read from T0547.t06.many.frag # found chain 1fm0D in training set Warning: unaligning (T0547)A30 (1fm0D)T27 because Y (epsilon') conformation "forbidden" or filtered. T0547 29 :P 1fm0D 26 :P T0547 31 :IIDIVKE 1fm0D 28 :VEALRQH Number of specific fragments extracted= 2 number of extra gaps= 1 total=82686 # 2nlrA.29.173 read from T0547.t06.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)P29 (2nlrA)F174 because Y (epsilon') conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 2nlrA 175 :DVMDFVRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=82687 # 2aqlA.29.37 read from T0547.t06.many.frag # found chain 2aqlA in template set Warning: unaligning (T0547)P29 (2aqlA)K188 because D (zeta) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 2aqlA 189 :NVDSILED Number of specific fragments extracted= 1 number of extra gaps= 1 total=82688 # 1m22A.29.10 read from T0547.t06.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)A30 (1m22A)D49 because P (beta_P) conformation "forbidden" or filtered. T0547 29 :P 1m22A 48 :T T0547 31 :IIDIVKE 1m22A 50 :VADLQAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=82690 # 1iuqA.29.13 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 29 :PAIIDIVKE 1iuqA 15 :EELLSCIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82691 # 1yc9A.29.32 read from T0547.t06.many.frag # found chain 1yc9A in training set Warning: unaligning (T0547)P29 because of BadResidue code BAD_PEPTIDE in next template residue (1yc9A)Q76 Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1yc9A)Q76 T0547 31 :IIDIVKE 1yc9A 77 :LNHLIEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=82692 # 1thfD.29.29 read from T0547.t06.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)P29 (1thfD)G30 because G (3-10) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1thfD 31 :DPVELGKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=82693 # 1h16A.29.22 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)A30 (1h16A)N24 because D (zeta) conformation "forbidden" or filtered. T0547 29 :P 1h16A 23 :V T0547 31 :IIDIVKE 1h16A 25 :VRDFIQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=82695 # 1io0A.29.21 read from T0547.t06.many.frag # found chain 1io0A in training set T0547 29 :PAIIDIVKE 1io0A 181 :TDVEETLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82696 # 1vq2A.29.46 read from T0547.t06.many.frag # found chain 1vq2A in template set T0547 29 :PAIIDIVKE 1vq2A 47 :VNCCDYAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82697 # 1ypqA.29.27 read from T0547.t06.many.frag # found chain 1ypqA in training set Warning: unaligning (T0547)P29 (1ypqA)F163 because Y (epsilon') conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1ypqA 164 :NWEKSQEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=82698 # 2b9eA.29.18 read from T0547.t06.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)P29 (2b9eA)T145 because Y (epsilon') conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 2b9eA 146 :CSDDVVDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=82699 # 1hq1A.29.1 read from T0547.t06.many.frag # found chain 1hq1A in training set Warning: unaligning (T0547)A30 (1hq1A)D3 because Y (epsilon') conformation "forbidden" or filtered. T0547 29 :P 1hq1A 2 :F T0547 31 :IIDIVKE 1hq1A 4 :LNDFLEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=82701 # 1tyv.29.18 read from T0547.t06.many.frag # found chain 1tyv in training set T0547 29 :PAIIDIVKE 1tyv 131 :PTLQDAASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82702 # 1ezwA.29.16 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 29 :PAIIDIVKE 1ezwA 17 :TKIAHLIKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82703 # 1yt3A.29.9 read from T0547.t06.many.frag # found chain 1yt3A in training set T0547 29 :PAIIDIVKE 1yt3A 10 :DALASLCEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82704 # 1g60A.29.9 read from T0547.t06.many.frag # found chain 1g60A in template set Warning: unaligning (T0547)P29 (1g60A)M10 because E (beta_S) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1g60A 11 :NCFDFLDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=82705 # 1ujpA.29.0 read from T0547.t06.many.frag # found chain 1ujpA in training set Warning: unaligning (T0547)P29 because first residue in template chain is (1ujpA)M1 T0547 30 :AIIDIVKE 1ujpA 2 :TTLEAFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82706 # 1v7wA.29.270 read from T0547.t06.many.frag # found chain 1v7wA in training set Warning: unaligning (T0547)P29 (1v7wA)G271 because T (delta_L) conformation "forbidden" or filtered. T0547 30 :AIIDIVKE 1v7wA 272 :NGERLREH Number of specific fragments extracted= 1 number of extra gaps= 1 total=82707 # 1jetA.29.226 read from T0547.t06.many.frag # found chain 1jetA in training set T0547 29 :PAIIDIVKE 1jetA 227 :SSEVTDVNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82708 # 1muwA.29.32 read from T0547.t06.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)P29 (1muwA)L33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A30 (1muwA)D34 because P (beta_P) conformation "forbidden" or filtered. T0547 31 :IIDIVKE 1muwA 35 :PVETVQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=82709 # 1hf8A.29.19 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 29 :PAIIDIVKE 1hf8A 20 :SAVSKTVCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82710 # 1rlr.30.100 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 30 :AIIDIVKEL 1rlr 101 :ALYDHVVKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=82711 # 1tzvA.30.25 read from T0547.t06.many.frag # found chain 1tzvA in training set T0547 30 :AIIDIVKEL 1tzvA 26 :DLEQILEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=82712 # 1tbxA.30.23 read from T0547.t06.many.frag # found chain 1tbxA in template set Warning: unaligning (T0547)A30 (1tbxA)A24 because P (beta_P) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1tbxA 25 :TYDLYKKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=82713 # 1tvxA.30.58 read from T0547.t06.many.frag # found chain 1tvxA in training set T0547 30 :AIIDIVKEL 1tvxA 74 :RIKKIVQKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82714 # 1m22A.30.11 read from T0547.t06.many.frag # found chain 1m22A in training set T0547 30 :AIIDIVKEL 1m22A 49 :DVADLQARM Number of specific fragments extracted= 1 number of extra gaps= 0 total=82715 # 1km4A.30.25 read from T0547.t06.many.frag # found chain 1km4A in template set T0547 30 :AIIDIVKEL 1km4A 26 :DALRVTGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82716 # 1iuqA.30.14 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 30 :AIIDIVKEL 1iuqA 16 :ELLSCIKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82717 # 1ezwA.30.17 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 30 :AIIDIVKEL 1ezwA 18 :KIAHLIKVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82718 # 1vefA.30.64 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 30 :AIIDIVKEL 1vefA 65 :EVVEAVKRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82719 # 1yzyA.30.150 read from T0547.t06.many.frag # found chain 1yzyA in template set T0547 30 :AIIDIVKEL 1yzyA 150 :NLMRLMDAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82720 # 1jetA.30.227 read from T0547.t06.many.frag # found chain 1jetA in training set Warning: unaligning (T0547)A30 (1jetA)S228 because P (beta_P) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1jetA 229 :EVTDVNRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=82721 # 1pii.30.68 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)A30 (1pii)D69 because D (zeta) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1pii 70 :PARIAAIY Number of specific fragments extracted= 1 number of extra gaps= 1 total=82722 # 1thfD.30.30 read from T0547.t06.many.frag # found chain 1thfD in training set T0547 30 :AIIDIVKEL 1thfD 31 :DPVELGKFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=82723 # 2aqlA.30.38 read from T0547.t06.many.frag # found chain 2aqlA in template set T0547 30 :AIIDIVKEL 2aqlA 189 :NVDSILEDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=82724 # 2nlrA.30.174 read from T0547.t06.many.frag # found chain 2nlrA in training set T0547 30 :AIIDIVKEL 2nlrA 175 :DVMDFVRAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=82725 # 1fm0D.30.26 read from T0547.t06.many.frag # found chain 1fm0D in training set Warning: unaligning (T0547)A30 (1fm0D)T27 because Y (epsilon') conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1fm0D 28 :VEALRQHM Number of specific fragments extracted= 1 number of extra gaps= 1 total=82726 # 1io0A.30.22 read from T0547.t06.many.frag # found chain 1io0A in training set T0547 30 :AIIDIVKEL 1io0A 182 :DVEETLKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=82727 # 1nv8A.30.14 read from T0547.t06.many.frag # found chain 1nv8A in template set T0547 30 :AIIDIVKEL 1nv8A 13 :KIWSLIRDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=82728 # 1h16A.30.23 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)A30 (1h16A)N24 because D (zeta) conformation "forbidden" or filtered. T0547 31 :IIDIVKEL 1h16A 25 :VRDFIQKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=82729 # 2b9eA.30.19 read from T0547.t06.many.frag # found chain 2b9eA in training set T0547 30 :AIIDIVKEL 2b9eA 146 :CSDDVVDYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=82730 # 1vq2A.30.47 read from T0547.t06.many.frag # found chain 1vq2A in template set T0547 30 :AIIDIVKEL 1vq2A 48 :NCCDYAAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82731 # 1v7wA.30.271 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 30 :AIIDIVKEL 1v7wA 272 :NGERLREHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=82732 # 1hf8A.30.20 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 30 :AIIDIVKEL 1hf8A 21 :AVSKTVCKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82733 # 1xttA.30.9 read from T0547.t06.many.frag # found chain 1xttA in training set T0547 30 :AIIDIVKEL 1xttA 10 :ITLHILTQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82734 # 1yc9A.30.33 read from T0547.t06.many.frag # found chain 1yc9A in training set Warning: unaligning (T0547)A30 because of BadResidue code BAD_PEPTIDE at template residue (1yc9A)Q76 T0547 31 :IIDIVKEL 1yc9A 77 :LNHLIEEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=82735 # 2fupA.30.17 read from T0547.t06.many.frag # found chain 2fupA in training set T0547 30 :AIIDIVKEL 2fupA 6 :TLLDLFAED Number of specific fragments extracted= 1 number of extra gaps= 0 total=82736 # 2af4C.30.27 read from T0547.t06.many.frag # found chain 2af4C in template set T0547 30 :AIIDIVKEL 2af4C 28 :RTLQAAAKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=82737 # 1m1nA.30.128 read from T0547.t06.many.frag # found chain 1m1nA in training set T0547 30 :AIIDIVKEL 1m1nA 130 :KLAKLIDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82738 # 2ar0A.30.10 read from T0547.t06.many.frag # found chain 2ar0A in template set T0547 30 :AIIDIVKEL 2ar0A 11 :KLWKLCDNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82739 # 1ujpA.30.1 read from T0547.t06.many.frag # found chain 1ujpA in training set T0547 30 :AIIDIVKEL 1ujpA 2 :TTLEAFAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82740 # 1tzvA.31.26 read from T0547.t06.many.frag # found chain 1tzvA in training set T0547 31 :IIDIVKELR 1tzvA 27 :LEQILEEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82741 # 1jetA.31.228 read from T0547.t06.many.frag # found chain 1jetA in training set T0547 31 :IIDIVKELR 1jetA 229 :EVTDVNRYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82742 # 1iuqA.31.15 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 31 :IIDIVKELR 1iuqA 17 :LLSCIKKET Number of specific fragments extracted= 1 number of extra gaps= 0 total=82743 # 1rlr.31.101 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 31 :IIDIVKELR 1rlr 102 :LYDHVVKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82744 # 1m22A.31.12 read from T0547.t06.many.frag # found chain 1m22A in training set T0547 31 :IIDIVKELR 1m22A 50 :VADLQARMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=82745 # 1tvxA.31.59 read from T0547.t06.many.frag # found chain 1tvxA in training set T0547 31 :IIDIVKELR 1tvxA 75 :IKKIVQKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82746 # 1tbxA.31.24 read from T0547.t06.many.frag # found chain 1tbxA in template set T0547 31 :IIDIVKELR 1tbxA 25 :TYDLYKKVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=82747 # 1km4A.31.26 read from T0547.t06.many.frag # found chain 1km4A in template set T0547 31 :IIDIVKELR 1km4A 27 :ALRVTGEVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82748 # 1ezwA.31.18 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 31 :IIDIVKELR 1ezwA 19 :IAHLIKVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82749 # 1vefA.31.65 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 31 :IIDIVKELR 1vefA 66 :VVEAVKRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82750 # 1xttA.31.10 read from T0547.t06.many.frag # found chain 1xttA in training set T0547 31 :IIDIVKELR 1xttA 11 :TLHILTQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82751 # 2b9eA.31.20 read from T0547.t06.many.frag # found chain 2b9eA in training set T0547 31 :IIDIVKELR 2b9eA 147 :SDDVVDYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82752 # 2aqlA.31.39 read from T0547.t06.many.frag # found chain 2aqlA in template set T0547 31 :IIDIVKELR 2aqlA 190 :VDSILEDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82753 # 1fm0D.31.27 read from T0547.t06.many.frag # found chain 1fm0D in training set T0547 31 :IIDIVKELR 1fm0D 28 :VEALRQHMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82754 # 1thfD.31.31 read from T0547.t06.many.frag # found chain 1thfD in training set T0547 31 :IIDIVKELR 1thfD 32 :PVELGKFYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=82755 # 1tz9A.31.56 read from T0547.t06.many.frag # found chain 1tz9A in template set T0547 31 :IIDIVKELR 1tz9A 47 :IQALKQSVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82756 # 2nlrA.31.175 read from T0547.t06.many.frag # found chain 2nlrA in training set T0547 31 :IIDIVKELR 2nlrA 176 :VMDFVRATV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82757 # 1a5t.31.10 read from T0547.t06.many.frag # found chain 1a5t in template set T0547 31 :IIDIVKELR 1a5t 11 :FEKLVASYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82758 # 1io0A.31.23 read from T0547.t06.many.frag # found chain 1io0A in training set T0547 31 :IIDIVKELR 1io0A 183 :VEETLKRIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82759 # 1jk0B.31.44 read from T0547.t06.many.frag # found chain 1jk0B in template set T0547 31 :IIDIVKELR 1jk0B 45 :IWAAYKKVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82760 # 1pii.31.69 read from T0547.t06.many.frag # found chain 1pii in template set T0547 31 :IIDIVKELR 1pii 70 :PARIAAIYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82761 # 1h6gA.31.24 read from T0547.t06.many.frag # found chain 1h6gA in template set T0547 31 :IIDIVKELR 1h6gA 401 :LLVLIEAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82762 1yarO expands to /projects/compbio/data/pdb/1yar.pdb.gz 1yarO:Skipped atom 23812, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 23814, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 23816, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 23818, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 23820, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 23822, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 23989, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 23991, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 23993, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 23995, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 23997, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 23999, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24001, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24003, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24005, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24397, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24399, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24401, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24403, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24405, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24407, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24409, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24411, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24413, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24415, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24417, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24621, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24623, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24625, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24627, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24629, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24631, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24633, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24635, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24805, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24807, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24809, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24811, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24813, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24815, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24817, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24819, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24886, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24888, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24890, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24892, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24894, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24896, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24914, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24916, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24918, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24920, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24922, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 24924, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25190, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25192, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25194, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25196, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25198, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25200, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25202, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25222, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25224, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25226, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25228, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25230, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25232, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25241, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25243, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25245, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25247, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25249, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25251, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25253, because occupancy 0.500 <= existing 0.500 in 1yarO Skipped atom 25255, because occupancy 0.500 <= existing 0.500 in 1yarO # 1yarO.31.26 read from T0547.t06.many.frag # adding 1yarO to template set # found chain 1yarO in template set T0547 31 :IIDIVKELR 1yarO 21 :SFAVIEEWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82763 # 1v7wA.31.272 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 31 :IIDIVKELR 1v7wA 273 :GERLREHYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82764 # 1nv8A.31.15 read from T0547.t06.many.frag # found chain 1nv8A in template set T0547 31 :IIDIVKELR 1nv8A 14 :IWSLIRDCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=82765 # 1lvaA.31.33 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 31 :IIDIVKELR 1lvaA 410 :TRKLLQSMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82766 # 1m1nA.31.129 read from T0547.t06.many.frag # found chain 1m1nA in training set T0547 31 :IIDIVKELR 1m1nA 131 :LAKLIDEVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82767 # 1yc9A.31.34 read from T0547.t06.many.frag # found chain 1yc9A in training set T0547 31 :IIDIVKELR 1yc9A 77 :LNHLIEEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82768 # 1i1wA.31.65 read from T0547.t06.many.frag # found chain 1i1wA in training set T0547 31 :IIDIVKELR 1i1wA 66 :ADYLVNWAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82769 # 1muwA.31.34 read from T0547.t06.many.frag # found chain 1muwA in training set T0547 31 :IIDIVKELR 1muwA 35 :PVETVQRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82770 # 1jetA.32.229 read from T0547.t06.many.frag # found chain 1jetA in training set T0547 32 :IDIVKELRD 1jetA 230 :VTDVNRYRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=82771 # 1tzvA.32.27 read from T0547.t06.many.frag # found chain 1tzvA in training set T0547 32 :IDIVKELRD 1tzvA 28 :EQILEEILD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82772 # 1iuqA.32.16 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 32 :IDIVKELRD 1iuqA 18 :LSCIKKETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82773 # 1rlr.32.102 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 32 :IDIVKELRD 1rlr 103 :YDHVVKMVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82774 # 1m22A.32.13 read from T0547.t06.many.frag # found chain 1m22A in training set T0547 32 :IDIVKELRD 1m22A 51 :ADLQARMTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82775 # 1tvxA.32.60 read from T0547.t06.many.frag # found chain 1tvxA in training set T0547 32 :IDIVKELRD 1tvxA 76 :KKIVQKKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82776 # 1xttA.32.11 read from T0547.t06.many.frag # found chain 1xttA in training set T0547 32 :IDIVKELRD 1xttA 12 :LHILTQLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82777 # 1a5t.32.11 read from T0547.t06.many.frag # found chain 1a5t in template set T0547 32 :IDIVKELRD 1a5t 12 :EKLVASYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82778 # 2aqlA.32.40 read from T0547.t06.many.frag # found chain 2aqlA in template set T0547 32 :IDIVKELRD 2aqlA 191 :DSILEDYAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=82779 # 1tbxA.32.25 read from T0547.t06.many.frag # found chain 1tbxA in template set T0547 32 :IDIVKELRD 1tbxA 26 :YDLYKKVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82780 # 1km4A.32.27 read from T0547.t06.many.frag # found chain 1km4A in template set T0547 32 :IDIVKELRD 1km4A 28 :LRVTGEVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82781 # 1ezwA.32.19 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 32 :IDIVKELRD 1ezwA 20 :AHLIKVAED Number of specific fragments extracted= 1 number of extra gaps= 0 total=82782 # 1fm0D.32.28 read from T0547.t06.many.frag # found chain 1fm0D in training set T0547 32 :IDIVKELRD 1fm0D 29 :EALRQHMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82783 # 1vefA.32.66 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 32 :IDIVKELRD 1vefA 67 :VEAVKRQAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82784 # 1k87A.32.228 read from T0547.t06.many.frag # found chain 1k87A in template set T0547 32 :IDIVKELRD 1k87A 229 :SRSLNRIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82785 # 2nlrA.32.176 read from T0547.t06.many.frag # found chain 2nlrA in training set T0547 32 :IDIVKELRD 2nlrA 177 :MDFVRATVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82786 # 1td6A.32.37 read from T0547.t06.many.frag # found chain 1td6A in template set T0547 32 :IDIVKELRD 1td6A 26 :REAFNDYHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82787 # 1m1nA.32.130 read from T0547.t06.many.frag # found chain 1m1nA in training set T0547 32 :IDIVKELRD 1m1nA 132 :AKLIDEVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=82788 # 1jk0B.32.45 read from T0547.t06.many.frag # found chain 1jk0B in template set T0547 32 :IDIVKELRD 1jk0B 46 :WAAYKKVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82789 # 1lvaA.32.34 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 32 :IDIVKELRD 1lvaA 411 :RKLLQSMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82790 # 1tz9A.32.57 read from T0547.t06.many.frag # found chain 1tz9A in template set T0547 32 :IDIVKELRD 1tz9A 48 :QALKQSVEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82791 # 1yarO.32.27 read from T0547.t06.many.frag # found chain 1yarO in template set T0547 32 :IDIVKELRD 1yarO 22 :FAVIEEWAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82792 # 1ujpA.32.3 read from T0547.t06.many.frag # found chain 1ujpA in training set T0547 32 :IDIVKELRD 1ujpA 4 :LEAFAKARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=82793 # 1muwA.32.35 read from T0547.t06.many.frag # found chain 1muwA in training set T0547 32 :IDIVKELRD 1muwA 36 :VETVQRLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82794 # 1yc9A.32.35 read from T0547.t06.many.frag # found chain 1yc9A in training set T0547 32 :IDIVKELRD 1yc9A 78 :NHLIEEALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82795 # 1nv8A.32.16 read from T0547.t06.many.frag # found chain 1nv8A in template set T0547 32 :IDIVKELRD 1nv8A 15 :WSLIRDCSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82796 # 1thfD.32.32 read from T0547.t06.many.frag # found chain 1thfD in training set T0547 32 :IDIVKELRD 1thfD 33 :VELGKFYSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82797 # 1io0A.32.24 read from T0547.t06.many.frag # found chain 1io0A in training set T0547 32 :IDIVKELRD 1io0A 184 :EETLKRIQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=82798 # 2af4C.32.29 read from T0547.t06.many.frag # found chain 2af4C in template set T0547 32 :IDIVKELRD 2af4C 30 :LQAAAKILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82799 # 2b9eA.32.21 read from T0547.t06.many.frag # found chain 2b9eA in training set T0547 32 :IDIVKELRD 2b9eA 148 :DDVVDYFKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82800 # 1jetA.33.230 read from T0547.t06.many.frag # found chain 1jetA in training set T0547 33 :DIVKELRDD 1jetA 231 :TDVNRYRSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82801 # 1tzvA.33.28 read from T0547.t06.many.frag # found chain 1tzvA in training set Warning: unaligning (T0547)R39 (1tzvA)L35 because P (beta_P) conformation "forbidden" or filtered. T0547 33 :DIVKEL 1tzvA 29 :QILEEI T0547 40 :DD 1tzvA 36 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=82803 # 1m22A.33.14 read from T0547.t06.many.frag # found chain 1m22A in training set T0547 33 :DIVKELRDD 1m22A 52 :DLQARMTAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82804 # 1xttA.33.12 read from T0547.t06.many.frag # found chain 1xttA in training set T0547 33 :DIVKELRDD 1xttA 13 :HILTQLRDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82805 # 1iuqA.33.17 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 33 :DIVKELRDD 1iuqA 19 :SCIKKETEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82806 # 1rlr.33.103 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 33 :DIVKELRDD 1rlr 104 :DHVVKMVEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=82807 # 1a5t.33.12 read from T0547.t06.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)D41 (1a5t)G21 because T (delta_L) conformation "forbidden" or filtered. T0547 33 :DIVKELRD 1a5t 13 :KLVASYQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=82808 # 1fm0D.33.29 read from T0547.t06.many.frag # found chain 1fm0D in training set T0547 33 :DIVKELRDD 1fm0D 30 :ALRQHMAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82809 # 2aqlA.33.41 read from T0547.t06.many.frag # found chain 2aqlA in template set T0547 33 :DIVKELRDD 2aqlA 192 :SILEDYANY Number of specific fragments extracted= 1 number of extra gaps= 0 total=82810 # 1ujpA.33.4 read from T0547.t06.many.frag # found chain 1ujpA in training set T0547 33 :DIVKELRDD 1ujpA 5 :EAFAKARSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82811 # 1k87A.33.229 read from T0547.t06.many.frag # found chain 1k87A in template set T0547 33 :DIVKELRDD 1k87A 230 :RSLNRIIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82812 # 2nlrA.33.177 read from T0547.t06.many.frag # found chain 2nlrA in training set T0547 33 :DIVKELRDD 2nlrA 178 :DFVRATVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82813 # 1tbxA.33.26 read from T0547.t06.many.frag # found chain 1tbxA in template set T0547 33 :DIVKELRDD 1tbxA 27 :DLYKKVNAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82814 # 1lvaA.33.35 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 33 :DIVKELRDD 1lvaA 412 :KLLQSMAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82815 # 1tz9A.33.58 read from T0547.t06.many.frag # found chain 1tz9A in template set T0547 33 :DIVKELRDD 1tz9A 49 :ALKQSVEQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82816 # 1jztA.33.13 read from T0547.t06.many.frag # found chain 1jztA in template set T0547 33 :DIVKELRDD 1jztA 14 :EIDKELMGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=82817 # 2b9eA.33.22 read from T0547.t06.many.frag # found chain 2b9eA in training set T0547 33 :DIVKELRDD 2b9eA 149 :DVVDYFKRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82818 # 1xcbA.33.15 read from T0547.t06.many.frag # found chain 1xcbA in template set T0547 33 :DIVKELRDD 1xcbA 16 :RILEELEAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82819 # 1tvxA.33.61 read from T0547.t06.many.frag # found chain 1tvxA in training set Warning: unaligning (T0547)D41 (1tvxA)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 33 :DIVKELRD 1tvxA 77 :KIVQKKLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=82820 # 1io0A.33.25 read from T0547.t06.many.frag # found chain 1io0A in training set T0547 33 :DIVKELRDD 1io0A 185 :ETLKRIQNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=82821 # 1ypqA.33.31 read from T0547.t06.many.frag # found chain 1ypqA in training set T0547 33 :DIVKELRDD 1ypqA 167 :KSQEKCLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82822 # 1km4A.33.28 read from T0547.t06.many.frag # found chain 1km4A in template set T0547 33 :DIVKELRDD 1km4A 29 :RVTGEVREY Number of specific fragments extracted= 1 number of extra gaps= 0 total=82823 # 1thfD.33.33 read from T0547.t06.many.frag # found chain 1thfD in training set T0547 33 :DIVKELRDD 1thfD 34 :ELGKFYSEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=82824 # 1eokA.33.69 read from T0547.t06.many.frag # found chain 1eokA in training set T0547 33 :DIVKELRDD 1eokA 70 :TQIRSLQSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82825 # 1ezwA.33.20 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 33 :DIVKELRDD 1ezwA 21 :HLIKVAEDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=82826 # 1muwA.33.36 read from T0547.t06.many.frag # found chain 1muwA in training set T0547 33 :DIVKELRDD 1muwA 37 :ETVQRLAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82827 # 1jk0B.33.46 read from T0547.t06.many.frag # found chain 1jk0B in template set T0547 33 :DIVKELRDD 1jk0B 47 :AAYKKVEAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=82828 # 2af4C.33.30 read from T0547.t06.many.frag # found chain 2af4C in template set T0547 33 :DIVKELRDD 2af4C 31 :QAAAKILER Number of specific fragments extracted= 1 number of extra gaps= 0 total=82829 # 1lycA.33.26 read from T0547.t06.many.frag # found chain 1lycA in template set T0547 33 :DIVKELRDD 1lycA 27 :DVLDDLQTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=82830 # 1vefA.33.67 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 33 :DIVKELRDD 1vefA 68 :EAVKRQAET Number of specific fragments extracted= 1 number of extra gaps= 0 total=82831 # 1jetA.34.231 read from T0547.t06.many.frag # found chain 1jetA in training set T0547 34 :IVKELRDDG 1jetA 232 :DVNRYRSGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82832 # 1tzvA.34.29 read from T0547.t06.many.frag # found chain 1tzvA in training set T0547 34 :IVKELRDDG 1tzvA 30 :ILEEILDET Number of specific fragments extracted= 1 number of extra gaps= 0 total=82833 # 1rlr.34.104 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 34 :IVKELRDDG 1rlr 105 :HVVKMVEMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82834 # 1xttA.34.13 read from T0547.t06.many.frag # found chain 1xttA in training set Warning: unaligning (T0547)G42 (1xttA)Y22 because G (3-10) conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1xttA 14 :ILTQLRDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=82835 # 1m22A.34.15 read from T0547.t06.many.frag # found chain 1m22A in training set T0547 34 :IVKELRDDG 1m22A 53 :LQARMTAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82836 # 1ujpA.34.5 read from T0547.t06.many.frag # found chain 1ujpA in training set T0547 34 :IVKELRDDG 1ujpA 6 :AFAKARSEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82837 # 1iuqA.34.18 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 34 :IVKELRDDG 1iuqA 20 :CIKKETEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82838 # 1xcbA.34.16 read from T0547.t06.many.frag # found chain 1xcbA in template set T0547 34 :IVKELRDDG 1xcbA 17 :ILEELEAQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82839 # 1k87A.34.230 read from T0547.t06.many.frag # found chain 1k87A in template set T0547 34 :IVKELRDDG 1k87A 231 :SLNRIIGKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=82840 # 1a5t.34.13 read from T0547.t06.many.frag # found chain 1a5t in template set T0547 34 :IVKELRDDG 1a5t 14 :LVASYQAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82841 # 2nlrA.34.178 read from T0547.t06.many.frag # found chain 2nlrA in training set T0547 34 :IVKELRDDG 2nlrA 179 :FVRATVARG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82842 # 2af4C.34.31 read from T0547.t06.many.frag # found chain 2af4C in template set T0547 34 :IVKELRDDG 2af4C 32 :AAAKILERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82843 # 1ejgA.34.11 read from T0547.t06.many.frag # found chain 1ejgA in training set T0547 34 :IVKELRDDG 1ejgA 12 :NFNVCRLPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82844 # 1jztA.34.14 read from T0547.t06.many.frag # found chain 1jztA in template set Warning: unaligning (T0547)D40 (1jztA)G21 because P (beta_P) conformation "forbidden" or filtered. T0547 34 :IVKELR 1jztA 15 :IDKELM T0547 41 :DG 1jztA 22 :PQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=82846 # 1lvaA.34.36 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 34 :IVKELRDDG 1lvaA 413 :LLQSMAAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82847 1rss expands to /projects/compbio/data/pdb/1rss.pdb.gz 1rss:Warning: there is no chain 1rss will retry with 1rssA # 1rss.34.20 read from T0547.t06.many.frag # adding 1rss to template set # found chain 1rss in template set Warning: unaligning (T0547)D41 (1rss)D33 because T (delta_L) conformation "forbidden" or filtered. T0547 34 :IVKELRD 1rss 26 :FINKIMR T0547 42 :G 1rss 34 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=82849 # 1t7lA.34.163 read from T0547.t06.many.frag # found chain 1t7lA in template set T0547 34 :IVKELRDDG 1t7lA 132 :DYLFFKSKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82850 # 1kkoA.34.179 read from T0547.t06.many.frag # found chain 1kkoA in training set T0547 34 :IVKELRDDG 1kkoA 180 :AVDKMILKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82851 # 1ezwA.34.21 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 34 :IVKELRDDG 1ezwA 22 :LIKVAEDNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82852 # 1fm0D.34.30 read from T0547.t06.many.frag # found chain 1fm0D in training set Warning: unaligning (T0547)G42 (1fm0D)S39 because Y (epsilon') conformation "forbidden" or filtered. T0547 34 :IVKELRDD 1fm0D 31 :LRQHMAAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=82853 # 2aqlA.34.42 read from T0547.t06.many.frag # found chain 2aqlA in template set T0547 34 :IVKELRDD 2aqlA 193 :ILEDYANY Number of specific fragments extracted= 1 number of extra gaps= 0 total=82854 # 1thfD.34.34 read from T0547.t06.many.frag # found chain 1thfD in training set T0547 34 :IVKELRDDG 1thfD 35 :LGKFYSEIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82855 # 1r0mA.34.154 read from T0547.t06.many.frag # found chain 1r0mA in training set T0547 34 :IVKELRDDG 1r0mA 155 :LVRRHVEQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82856 # 1eokA.34.70 read from T0547.t06.many.frag # found chain 1eokA in training set T0547 34 :IVKELRDDG 1eokA 71 :QIRSLQSRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82857 # 2b9eA.34.23 read from T0547.t06.many.frag # found chain 2b9eA in training set T0547 34 :IVKELRDDG 2b9eA 150 :VVDYFKRQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82858 # 1yviA.34.12 read from T0547.t06.many.frag # found chain 1yviA in template set T0547 34 :IVKELRDDG 1yviA 13 :LLSSMFSQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82859 # 1vjrA.34.40 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 34 :IVKELRDDG 1vjrA 29 :FLETLKEKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=82860 # 1y44A.34.74 read from T0547.t06.many.frag # found chain 1y44A in template set T0547 34 :IVKELRDDG 1y44A 75 :LLGSRSFQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82861 # 1tz9A.34.59 read from T0547.t06.many.frag # found chain 1tz9A in template set T0547 34 :IVKELRDDG 1tz9A 50 :LKQSVEQEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82862 # 1ypqA.34.32 read from T0547.t06.many.frag # found chain 1ypqA in training set T0547 34 :IVKELRDDG 1ypqA 168 :SQEKCLSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82863 # 1ejgA.35.12 read from T0547.t06.many.frag # found chain 1ejgA in training set T0547 35 :VKELRDDGY 1ejgA 13 :FNVCRLPGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=82864 # 1jetA.35.232 read from T0547.t06.many.frag # found chain 1jetA in training set Warning: unaligning (T0547)D41 (1jetA)G239 because T (delta_L) conformation "forbidden" or filtered. T0547 35 :VKELRD 1jetA 233 :VNRYRS T0547 42 :GY 1jetA 240 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=82866 # 1m22A.35.16 read from T0547.t06.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)G42 (1m22A)E61 because G (3-10) conformation "forbidden" or filtered. T0547 35 :VKELRDD 1m22A 54 :QARMTAG T0547 43 :Y 1m22A 62 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=82868 # 1t7lA.35.164 read from T0547.t06.many.frag # found chain 1t7lA in template set T0547 35 :VKELRDDGY 1t7lA 133 :YLFFKSKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=82869 # 1xttA.35.14 read from T0547.t06.many.frag # found chain 1xttA in training set T0547 35 :VKELRDDGY 1xttA 15 :LTQLRDKYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=82870 # 1a5t.35.14 read from T0547.t06.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)D41 (1a5t)G21 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G42 (1a5t)R22 because G (3-10) conformation "forbidden" or filtered. T0547 35 :VKELRD 1a5t 15 :VASYQA T0547 43 :Y 1a5t 23 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=82872 # 1iuqA.35.19 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 35 :VKELRDDGY 1iuqA 21 :IKKETEAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82873 # 1ujpA.35.6 read from T0547.t06.many.frag # found chain 1ujpA in training set T0547 35 :VKELRDDGY 1ujpA 7 :FAKARSEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82874 # 2b9eA.35.24 read from T0547.t06.many.frag # found chain 2b9eA in training set T0547 35 :VKELRDDGY 2b9eA 151 :VDYFKRQGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=82875 # 1ezwA.35.22 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 35 :VKELRDDGY 1ezwA 23 :IKVAEDNGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=82876 # 1rlr.35.105 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 35 :VKELRDDGY 1rlr 106 :VVKMVEMGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82877 # 1vjrA.35.41 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 35 :VKELRDDGY 1vjrA 30 :LETLKEKNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82878 # 1tz9A.35.60 read from T0547.t06.many.frag # found chain 1tz9A in template set T0547 35 :VKELRDDGY 1tz9A 51 :KQSVEQEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82879 # 1xcbA.35.17 read from T0547.t06.many.frag # found chain 1xcbA in template set T0547 35 :VKELRDDGY 1xcbA 18 :LEELEAQGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82880 # 1kkoA.35.180 read from T0547.t06.many.frag # found chain 1kkoA in training set T0547 35 :VKELRDDGY 1kkoA 181 :VDKMILKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82881 # 1eokA.35.71 read from T0547.t06.many.frag # found chain 1eokA in training set T0547 35 :VKELRDDGY 1eokA 72 :IRSLQSRGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=82882 # 1ikpA.35.294 read from T0547.t06.many.frag # found chain 1ikpA in training set T0547 35 :VKELRDDGY 1ikpA 295 :VALYLAARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82883 # 1tzvA.35.30 read from T0547.t06.many.frag # found chain 1tzvA in training set T0547 35 :VKELRDDGY 1tzvA 31 :LEEILDETY Number of specific fragments extracted= 1 number of extra gaps= 0 total=82884 # 1thfD.35.35 read from T0547.t06.many.frag # found chain 1thfD in training set T0547 35 :VKELRDDGY 1thfD 36 :GKFYSEIGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=82885 # 2nlrA.35.179 read from T0547.t06.many.frag # found chain 2nlrA in training set T0547 35 :VKELRDDGY 2nlrA 180 :VRATVARGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82886 # 1y44A.35.75 read from T0547.t06.many.frag # found chain 1y44A in template set T0547 35 :VKELRDDGY 1y44A 76 :LGSRSFQGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82887 # 1zhvA.35.82 read from T0547.t06.many.frag # found chain 1zhvA in training set T0547 35 :VKELRDDGY 1zhvA 84 :ISPLSTNGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=82888 # 1yviA.35.13 read from T0547.t06.many.frag # found chain 1yviA in template set T0547 35 :VKELRDDGY 1yviA 14 :LSSMFSQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82889 # 1ug6A.35.102 read from T0547.t06.many.frag # found chain 1ug6A in training set T0547 35 :VKELRDDGY 1ug6A 103 :VDRLLASGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=82890 # 1ufaA.35.42 read from T0547.t06.many.frag # found chain 1ufaA in template set T0547 35 :VKELRDDGY 1ufaA 43 :LERLRAEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82891 # 1lvaA.35.37 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 35 :VKELRDDGY 1lvaA 414 :LQSMAAAGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82892 # 1gmuA.35.88 read from T0547.t06.many.frag # found chain 1gmuA in training set T0547 35 :VKELRDDGY 1gmuA 89 :CYALGNRHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82893 # 2fnuA.35.18 read from T0547.t06.many.frag # found chain 2fnuA in training set T0547 35 :VKELRDDGY 2fnuA 19 :VLEVLNSKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82894 # 1vquA.35.30 read from T0547.t06.many.frag # found chain 1vquA in template set Warning: unaligning (T0547)D41 (1vquA)G25 because T (delta_L) conformation "forbidden" or filtered. T0547 35 :VKELRD 1vquA 19 :LQQLID T0547 42 :GY 1vquA 26 :ES Number of specific fragments extracted= 2 number of extra gaps= 1 total=82896 # 1ypqA.35.33 read from T0547.t06.many.frag # found chain 1ypqA in training set T0547 35 :VKELRDDGY 1ypqA 169 :QEKCLSLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82897 # 1ejgA.36.13 read from T0547.t06.many.frag # found chain 1ejgA in training set T0547 36 :KELRDDGYK 1ejgA 14 :NVCRLPGTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=82898 # 1t7lA.36.165 read from T0547.t06.many.frag # found chain 1t7lA in template set T0547 36 :KELRDDGYK 1t7lA 134 :LFFKSKGIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82899 # 1tz9A.36.61 read from T0547.t06.many.frag # found chain 1tz9A in template set T0547 36 :KELRDDGYK 1tz9A 52 :QSVEQEGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82900 # 1kkoA.36.181 read from T0547.t06.many.frag # found chain 1kkoA in training set T0547 36 :KELRDDGYK 1kkoA 182 :DKMILKGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82901 # 1a5t.36.15 read from T0547.t06.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)D41 (1a5t)G21 because T (delta_L) conformation "forbidden" or filtered. T0547 36 :KELRD 1a5t 16 :ASYQA T0547 42 :GYK 1a5t 22 :RGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=82903 # 1jetA.36.233 read from T0547.t06.many.frag # found chain 1jetA in training set T0547 36 :KELRDDGYK 1jetA 234 :NRYRSGEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=82904 # 2b9eA.36.25 read from T0547.t06.many.frag # found chain 2b9eA in training set T0547 36 :KELRDDGYK 2b9eA 152 :DYFKRQGFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=82905 # 1ufaA.36.43 read from T0547.t06.many.frag # found chain 1ufaA in template set T0547 36 :KELRDDGYK 1ufaA 44 :ERLRAEGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82906 # 1yviA.36.14 read from T0547.t06.many.frag # found chain 1yviA in template set T0547 36 :KELRDDGYK 1yviA 15 :SSMFSQGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82907 # 1vjrA.36.42 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 36 :KELRDDGYK 1vjrA 31 :ETLKEKNKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82908 # 1zhvA.36.83 read from T0547.t06.many.frag # found chain 1zhvA in training set T0547 36 :KELRDDGYK 1zhvA 85 :SPLSTNGIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82909 # 1ug6A.36.103 read from T0547.t06.many.frag # found chain 1ug6A in training set T0547 36 :KELRDDGYK 1ug6A 104 :DRLLASGIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=82910 # 1gmuA.36.89 read from T0547.t06.many.frag # found chain 1gmuA in training set T0547 36 :KELRDDGYK 1gmuA 90 :YALGNRHVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=82911 # 1y44A.36.76 read from T0547.t06.many.frag # found chain 1y44A in template set T0547 36 :KELRDDGYK 1y44A 77 :GSRSFQGGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82912 # 1ikpA.36.295 read from T0547.t06.many.frag # found chain 1ikpA in training set T0547 36 :KELRDDGYK 1ikpA 296 :ALYLAARLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=82913 # 1ujpA.36.7 read from T0547.t06.many.frag # found chain 1ujpA in training set T0547 36 :KELRDDGYK 1ujpA 8 :AKARSEGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=82914 # 1m22A.36.17 read from T0547.t06.many.frag # found chain 1m22A in training set T0547 36 :KELRDDGYK 1m22A 55 :ARMTAGELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82915 # 1iuqA.36.20 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 36 :KELRDDGYK 1iuqA 22 :KKETEAGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82916 # 1lvaA.36.38 read from T0547.t06.many.frag # found chain 1lvaA in template set Warning: unaligning (T0547)K44 (1lvaA)V423 because E (beta_S) conformation "forbidden" or filtered. T0547 36 :KELRDDGY 1lvaA 415 :QSMAAAGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=82917 # 1xcbA.36.18 read from T0547.t06.many.frag # found chain 1xcbA in template set T0547 36 :KELRDDGYK 1xcbA 19 :EELEAQGVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=82918 # 1tzvA.36.31 read from T0547.t06.many.frag # found chain 1tzvA in training set Warning: unaligning (T0547)R39 (1tzvA)L35 because P (beta_P) conformation "forbidden" or filtered. T0547 36 :KEL 1tzvA 32 :EEI T0547 40 :DDGYK 1tzvA 36 :DETYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=82920 # 1i1wA.36.70 read from T0547.t06.many.frag # found chain 1i1wA in training set T0547 36 :KELRDDGYK 1i1wA 71 :NWAQQNGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82921 # 1r0mA.36.156 read from T0547.t06.many.frag # found chain 1r0mA in training set T0547 36 :KELRDDGYK 1r0mA 157 :RRHVEQGYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82922 # 1ezwA.36.23 read from T0547.t06.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)K44 (1ezwA)E32 because G (3-10) conformation "forbidden" or filtered. T0547 36 :KELRDDGY 1ezwA 24 :KVAEDNGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=82923 # 1m65A.36.24 read from T0547.t06.many.frag # found chain 1m65A in training set T0547 36 :KELRDDGYK 1m65A 25 :AQAKQKGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=82924 # 2af4C.36.33 read from T0547.t06.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 T0547 36 :KELRDDGY 2af4C 34 :AKILERGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=82925 # 1xttA.36.15 read from T0547.t06.many.frag # found chain 1xttA in training set Warning: unaligning (T0547)G42 (1xttA)Y22 because G (3-10) conformation "forbidden" or filtered. T0547 36 :KELRDD 1xttA 16 :TQLRDK T0547 43 :YK 1xttA 23 :TD Number of specific fragments extracted= 2 number of extra gaps= 1 total=82927 # 2fnuA.36.19 read from T0547.t06.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)G42 (2fnuA)K26 because G (3-10) conformation "forbidden" or filtered. T0547 36 :KELRDD 2fnuA 20 :LEVLNS T0547 43 :YK 2fnuA 27 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=82929 # 1t3tA.36.28 read from T0547.t06.many.frag # found chain 1t3tA in template set T0547 36 :KELRDDGYK 1t3tA 21 :ARFQAANLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=82930 # 2bmfA.36.41 read from T0547.t06.many.frag # found chain 2bmfA in template set T0547 36 :KELRDDGYK 2bmfA 209 :REAIKRGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82931 # 1ufaA.37.44 read from T0547.t06.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)G45 (1ufaA)A53 because D (zeta) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1ufaA 45 :RLRAEGVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=82932 # 1t7lA.37.166 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)K44 (1t7lA)E142 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDDGY 1t7lA 135 :FFKSKGI T0547 45 :G 1t7lA 143 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=82934 # 1vjrA.37.43 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 37 :ELRDDGYKG 1vjrA 32 :TLKEKNKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=82935 # 1zhvA.37.84 read from T0547.t06.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)G45 (1zhvA)I94 because E (beta_S) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1zhvA 86 :PLSTNGIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=82936 # 2b9eA.37.26 read from T0547.t06.many.frag # found chain 2b9eA in training set T0547 37 :ELRDDGYKG 2b9eA 153 :YFKRQGFSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=82937 # 1y44A.37.77 read from T0547.t06.many.frag # found chain 1y44A in template set T0547 37 :ELRDDGYKG 1y44A 78 :SRSFQGGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=82938 # 1tz9A.37.62 read from T0547.t06.many.frag # found chain 1tz9A in template set T0547 37 :ELRDDGYKG 1tz9A 53 :SVEQEGLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82939 # 1byi.37.24 read from T0547.t06.many.frag # found chain 1byi in training set T0547 37 :ELRDDGYKG 1byi 25 :AAKAAGYRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=82940 # 1ug6A.37.104 read from T0547.t06.many.frag # found chain 1ug6A in training set T0547 37 :ELRDDGYKG 1ug6A 105 :RLLASGITP Number of specific fragments extracted= 1 number of extra gaps= 0 total=82941 # 1gmuA.37.90 read from T0547.t06.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)G45 (1gmuA)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1gmuA 91 :ALGNRHVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=82942 # 1kkoA.37.182 read from T0547.t06.many.frag # found chain 1kkoA in training set T0547 37 :ELRDDGYKG 1kkoA 183 :KMILKGVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82943 # 1gvfA.37.11 read from T0547.t06.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)K44 (1gvfA)A19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1gvfA)V20 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDDGY 1gvfA 12 :DAQANGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=82944 # 1ejgA.37.14 read from T0547.t06.many.frag # found chain 1ejgA in training set T0547 37 :ELRDDGYKG 1ejgA 15 :VCRLPGTPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82945 # 1m65A.37.25 read from T0547.t06.many.frag # found chain 1m65A in training set T0547 37 :ELRDDGYKG 1m65A 26 :QAKQKGIKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=82946 # 1a5t.37.16 read from T0547.t06.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)G42 (1a5t)R22 because G (3-10) conformation "forbidden" or filtered. T0547 37 :ELRDD 1a5t 17 :SYQAG T0547 43 :YKG 1a5t 23 :GHH Number of specific fragments extracted= 2 number of extra gaps= 1 total=82948 # 1t3tA.37.29 read from T0547.t06.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)G45 (1t3tA)V30 because E (beta_S) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1t3tA 22 :RFQAANLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=82949 # 1o7qA.37.41 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 37 :ELRDDGYKG 1o7qA 121 :YYAKQKITV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82950 # 1xdzA.37.9 read from T0547.t06.many.frag # found chain 1xdzA in training set Warning: unaligning (T0547)G45 (1xdzA)L17 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1xdzA 9 :GLAEKGIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=82951 # 2bmfA.37.42 read from T0547.t06.many.frag # found chain 2bmfA in template set T0547 37 :ELRDDGYKG 2bmfA 210 :EAIKRGLRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=82952 # 1i1wA.37.71 read from T0547.t06.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)K44 (1i1wA)L79 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDDGY 1i1wA 72 :WAQQNGK T0547 45 :G 1i1wA 80 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=82954 # 1r0mA.37.157 read from T0547.t06.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)G45 (1r0mA)R166 because E (beta_S) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1r0mA 158 :RHVEQGYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=82955 # 1ikpA.37.296 read from T0547.t06.many.frag # found chain 1ikpA in training set T0547 37 :ELRDDGYKG 1ikpA 297 :LYLAARLSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=82956 # 1jetA.37.234 read from T0547.t06.many.frag # found chain 1jetA in training set Warning: unaligning (T0547)D41 (1jetA)G239 because T (delta_L) conformation "forbidden" or filtered. T0547 37 :ELRD 1jetA 235 :RYRS T0547 42 :GYKG 1jetA 240 :EIDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=82958 # 1bcpB.37.154 read from T0547.t06.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)G45 (1bcpB)V163 because P (beta_P) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1bcpB 155 :LIYVAGIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=82959 # 1eokA.37.73 read from T0547.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0547)G45 (1eokA)V82 because E (beta_S) conformation "forbidden" or filtered. T0547 37 :ELRDDGYK 1eokA 74 :SLQSRGIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=82960 # 1yviA.37.15 read from T0547.t06.many.frag # found chain 1yviA in template set T0547 37 :ELRDDGYKG 1yviA 16 :SMFSQGLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82961 # 1ezwA.37.24 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 37 :ELRDDGYKG 1ezwA 25 :VAEDNGFEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=82962 # 1i0dA.37.55 read from T0547.t06.many.frag # found chain 1i0dA in template set T0547 37 :ELRDDGYKG 1i0dA 89 :RARAAGVRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=82963 # 1n0qA.37.19 read from T0547.t06.many.frag # found chain 1n0qA in training set T0547 37 :ELRDDGYKG 1n0qA 20 :LLLEAGADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=82964 # 1xcbA.37.19 read from T0547.t06.many.frag # found chain 1xcbA in template set T0547 37 :ELRDDGYKG 1xcbA 20 :ELEAQGVHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=82965 # 1t7lA.38.167 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)G45 (1t7lA)T143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1t7lA 136 :FKSKGIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=82966 # 1ufaA.38.45 read from T0547.t06.many.frag # found chain 1ufaA in template set T0547 38 :LRDDGYKGP 1ufaA 46 :LRAEGVEAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=82967 # 1gvfA.38.12 read from T0547.t06.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)G45 (1gvfA)V20 because P (beta_P) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1gvfA 13 :AQANGYA T0547 46 :P 1gvfA 21 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=82969 # 1vjrA.38.44 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)P46 (1vjrA)V41 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1vjrA 33 :LKEKNKRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=82970 # 1tz9A.38.63 read from T0547.t06.many.frag # found chain 1tz9A in template set Warning: unaligning (T0547)G45 (1tz9A)L61 because N (gamma') conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1tz9A 54 :VEQEGLA T0547 46 :P 1tz9A 62 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=82972 # 1byi.38.25 read from T0547.t06.many.frag # found chain 1byi in training set Warning: unaligning (T0547)P46 (1byi)A34 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1byi 26 :AKAAGYRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=82973 # 1zhvA.38.85 read from T0547.t06.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)P46 (1zhvA)F95 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1zhvA 87 :LSTNGIGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=82974 # 1a5t.38.17 read from T0547.t06.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)D41 (1a5t)G21 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G42 (1a5t)R22 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 38 :LRD 1a5t 18 :YQA T0547 43 :YKG 1a5t 23 :GHH Number of specific fragments extracted= 2 number of extra gaps= 2 total=82976 # 1ug6A.38.105 read from T0547.t06.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)P46 (1ug6A)F114 because D (zeta) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1ug6A 106 :LLASGITP Number of specific fragments extracted= 1 number of extra gaps= 1 total=82977 # 2b9eA.38.27 read from T0547.t06.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)G45 (2b9eA)Y161 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2b9eA)Q162 because G (3-10) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 2b9eA 154 :FKRQGFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=82978 # 1bcpB.38.155 read from T0547.t06.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)P46 (1bcpB)R164 because D (zeta) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1bcpB 156 :IYVAGISV Number of specific fragments extracted= 1 number of extra gaps= 1 total=82979 # 1gmuA.38.91 read from T0547.t06.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)G45 (1gmuA)L99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1gmuA)Q100 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1gmuA 92 :LGNRHVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=82980 # 1kkoA.38.183 read from T0547.t06.many.frag # found chain 1kkoA in training set Warning: unaligning (T0547)P46 (1kkoA)L192 because Y (epsilon') conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1kkoA 184 :MILKGVDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=82981 # 1y44A.38.78 read from T0547.t06.many.frag # found chain 1y44A in template set T0547 38 :LRDDGYKGP 1y44A 79 :RSFQGGEDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=82982 # 2d1pA.38.38 read from T0547.t06.many.frag # found chain 2d1pA in template set Warning: unaligning (T0547)G45 (2d1pA)L34 because N (gamma') conformation "forbidden" or filtered. T0547 38 :LRDDGYK 2d1pA 27 :LIADGHE T0547 46 :P 2d1pA 35 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=82984 # 1t3tA.38.30 read from T0547.t06.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)G45 (1t3tA)V30 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1t3tA 23 :FQAANLQ T0547 46 :P 1t3tA 31 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=82986 # 1o7qA.38.42 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 38 :LRDDGYKGP 1o7qA 122 :YAKQKITVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=82987 # 1r9jA.38.91 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)K44 (1r9jA)R96 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1r9jA)T97 because D (zeta) conformation "forbidden" or filtered. T0547 38 :LRDDGY 1r9jA 90 :FRQDGS T0547 46 :P 1r9jA 98 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=82989 # 1m65A.38.26 read from T0547.t06.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)P46 (1m65A)F35 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1m65A 27 :AKQKGIKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=82990 # 1jr2A.38.43 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)P46 (1jr2A)T31 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1jr2A 23 :LGLYGLEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=82991 # 1ybdA.38.41 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)P46 (1ybdA)G52 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1ybdA 44 :VVKMGVQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=82992 # 1r0mA.38.158 read from T0547.t06.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)G45 (1r0mA)R166 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1r0mA)I167 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1r0mA 159 :HVEQGYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=82993 # 1eokA.38.74 read from T0547.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0547)K44 (1eokA)K81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1eokA)L83 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGY 1eokA 75 :LQSRGI T0547 45 :G 1eokA 82 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=82995 # 1i0dA.38.56 read from T0547.t06.many.frag # found chain 1i0dA in template set Warning: unaligning (T0547)P46 (1i0dA)I98 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1i0dA 90 :ARAAGVRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=82996 # 2bmfA.38.43 read from T0547.t06.many.frag # found chain 2bmfA in template set Warning: unaligning (T0547)P46 (2bmfA)L219 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 2bmfA 211 :AIKRGLRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=82997 # 1jetA.38.235 read from T0547.t06.many.frag # found chain 1jetA in training set T0547 38 :LRDDGYKGP 1jetA 236 :YRSGEIDMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=82998 # 1lqtA.38.26 read from T0547.t06.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)G45 (1lqtA)M34 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1lqtA)A35 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1lqtA 27 :DTTEDLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=82999 # 1w2wB.38.25 read from T0547.t06.many.frag # found chain 1w2wB in training set Warning: unaligning (T0547)P46 (1w2wB)T254 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYKG 1w2wB 246 :LVYDKIPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=83000 # 1ujpA.38.9 read from T0547.t06.many.frag # found chain 1ujpA in training set Warning: unaligning (T0547)G45 (1ujpA)A17 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1ujpA)L18 because E (beta_S) conformation "forbidden" or filtered. T0547 38 :LRDDGYK 1ujpA 10 :ARSEGRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=83001 # 1xdzA.38.10 read from T0547.t06.many.frag # found chain 1xdzA in training set T0547 38 :LRDDGYKGP 1xdzA 10 :LAEKGISLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=83002 # 1t7lA.39.168 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1t7lA 137 :KSKGIET T0547 47 :L 1t7lA 145 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=83004 # 1ufaA.39.46 read from T0547.t06.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)G45 (1ufaA)A53 because D (zeta) conformation "forbidden" or filtered. T0547 39 :RDDGYK 1ufaA 47 :RAEGVE T0547 46 :PL 1ufaA 54 :PF Number of specific fragments extracted= 2 number of extra gaps= 1 total=83006 # 1vjrA.39.45 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)K44 (1vjrA)R39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1vjrA)V41 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGY 1vjrA 34 :KEKNK T0547 45 :G 1vjrA 40 :F T0547 47 :L 1vjrA 42 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=83009 # 1gvfA.39.13 read from T0547.t06.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)L47 (1gvfA)A22 because D (zeta) conformation "forbidden" or filtered. T0547 39 :RDDGYKGP 1gvfA 14 :QANGYAVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=83010 # 1byi.39.26 read from T0547.t06.many.frag # found chain 1byi in training set Warning: unaligning (T0547)G45 (1byi)T33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1byi)A34 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYK 1byi 27 :KAAGYR T0547 47 :L 1byi 35 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=83012 # 1tz9A.39.64 read from T0547.t06.many.frag # found chain 1tz9A in template set Warning: unaligning (T0547)K44 (1tz9A)A60 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1tz9A)L61 because N (gamma') conformation "forbidden" or filtered. T0547 39 :RDDGY 1tz9A 55 :EQEGL T0547 46 :PL 1tz9A 62 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=83014 # 1lqtA.39.27 read from T0547.t06.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)D41 (1lqtA)E30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1lqtA)A35 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RD 1lqtA 28 :TT T0547 42 :GYKG 1lqtA 31 :DLDM T0547 47 :L 1lqtA 36 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=83017 # 1a5t.39.18 read from T0547.t06.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)D41 (1a5t)G21 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G42 (1a5t)R22 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 39 :RD 1a5t 19 :QA T0547 43 :YKG 1a5t 23 :GHH T0547 47 :L 1a5t 27 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=83020 # 1bcpB.39.156 read from T0547.t06.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)G45 (1bcpB)V163 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1bcpB)R164 because D (zeta) conformation "forbidden" or filtered. T0547 39 :RDDGYK 1bcpB 157 :YVAGIS T0547 47 :L 1bcpB 165 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=83022 # 1o7qA.39.43 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 39 :RDDGYKGPL 1o7qA 123 :AKQKITVGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83023 # 2d1pA.39.39 read from T0547.t06.many.frag # found chain 2d1pA in template set Warning: unaligning (T0547)G45 (2d1pA)L34 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (2d1pA)S36 because Y (epsilon') conformation "forbidden" or filtered. T0547 39 :RDDGYK 2d1pA 28 :IADGHE T0547 46 :P 2d1pA 35 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=83025 # 2etjA.39.18 read from T0547.t06.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)G42 (2etjA)E10 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (2etjA)I13 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2etjA)V14 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDD 2etjA 7 :YKK T0547 43 :YK 2etjA 11 :FG T0547 47 :L 2etjA 15 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=83028 # 1ug6A.39.106 read from T0547.t06.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)P46 (1ug6A)F114 because D (zeta) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1ug6A 107 :LASGITP T0547 47 :L 1ug6A 115 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=83030 # 1m65A.39.27 read from T0547.t06.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)P46 (1m65A)F35 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1m65A 28 :KQKGIKL T0547 47 :L 1m65A 36 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=83032 # 1zhvA.39.86 read from T0547.t06.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)P46 (1zhvA)F95 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1zhvA 88 :STNGIGI T0547 47 :L 1zhvA 96 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=83034 # 1ybdA.39.42 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)P46 (1ybdA)G52 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1ybdA 45 :VKMGVQV T0547 47 :L 1ybdA 53 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=83036 # 1y44A.39.79 read from T0547.t06.many.frag # found chain 1y44A in template set Warning: unaligning (T0547)G45 (1y44A)D86 because P (beta_P) conformation "forbidden" or filtered. T0547 39 :RDDGYK 1y44A 80 :SFQGGE T0547 46 :PL 1y44A 87 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=83038 # 1i1wA.39.73 read from T0547.t06.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)P46 (1i1wA)R81 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1i1wA 74 :QQNGKLI T0547 47 :L 1i1wA 82 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=83040 # 1eokA.39.75 read from T0547.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0547)K44 (1eokA)K81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1eokA)L83 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGY 1eokA 76 :QSRGI T0547 45 :G 1eokA 82 :V T0547 47 :L 1eokA 84 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=83043 # 2b9eA.39.28 read from T0547.t06.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)P46 (2b9eA)Q162 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (2b9eA)G163 because S (epsilon) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 2b9eA 155 :KRQGFSY Number of specific fragments extracted= 1 number of extra gaps= 1 total=83044 # 1gmuA.39.92 read from T0547.t06.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)P46 (1gmuA)Q100 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1gmuA 93 :GNRHVPL T0547 47 :L 1gmuA 101 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=83046 # 2bmfA.39.44 read from T0547.t06.many.frag # found chain 2bmfA in template set Warning: unaligning (T0547)P46 (2bmfA)L219 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 2bmfA 212 :IKRGLRT T0547 47 :L 2bmfA 220 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=83048 # 1jr2A.39.44 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)K44 (1jr2A)E29 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1jr2A)A30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1jr2A)T31 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGY 1jr2A 24 :GLYGL T0547 47 :L 1jr2A 32 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=83050 # 1kkoA.39.184 read from T0547.t06.many.frag # found chain 1kkoA in training set Warning: unaligning (T0547)P46 (1kkoA)L192 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (1kkoA)P193 because C (cis) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1kkoA 185 :ILKGVDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=83051 # 1r0mA.39.159 read from T0547.t06.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)P46 (1r0mA)I167 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1r0mA 160 :VEQGYRR T0547 47 :L 1r0mA 168 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=83053 # 1t3tA.39.31 read from T0547.t06.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)L47 (1t3tA)N32 because Y (epsilon') conformation "forbidden" or filtered. T0547 39 :RDDGYKGP 1t3tA 24 :QAANLQVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=83054 # 1r9jA.39.92 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)R39 (1r9jA)R91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D40 (1r9jA)Q92 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1r9jA)T97 because D (zeta) conformation "forbidden" or filtered. T0547 41 :DGYK 1r9jA 93 :DGSR T0547 46 :PL 1r9jA 98 :PG Number of specific fragments extracted= 2 number of extra gaps= 2 total=83056 # 2af4C.39.36 read from T0547.t06.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGY 2af4C 37 :LERGI T0547 47 :L 2af4C 45 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=83058 # 1o66A.39.12 read from T0547.t06.many.frag # found chain 1o66A in training set Warning: unaligning (T0547)G45 (1o66A)I17 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1o66A)A18 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYK 1o66A 11 :KAAGEK T0547 47 :L 1o66A 19 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=83060 # 1i0dA.39.57 read from T0547.t06.many.frag # found chain 1i0dA in template set Warning: unaligning (T0547)P46 (1i0dA)I98 because E (beta_S) conformation "forbidden" or filtered. T0547 39 :RDDGYKG 1i0dA 91 :RAAGVRT T0547 47 :L 1i0dA 99 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=83062 # 1t7lA.40.169 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1t7lA 138 :SKGIET T0547 47 :LL 1t7lA 145 :PW Number of specific fragments extracted= 2 number of extra gaps= 1 total=83064 # 1ufaA.40.47 read from T0547.t06.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)G45 (1ufaA)A53 because D (zeta) conformation "forbidden" or filtered. T0547 40 :DDGYK 1ufaA 48 :AEGVE T0547 46 :PLL 1ufaA 54 :PFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=83066 # 1byi.40.27 read from T0547.t06.many.frag # found chain 1byi in training set Warning: unaligning (T0547)P46 (1byi)A34 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1byi 28 :AAGYRT T0547 47 :LL 1byi 35 :GY Number of specific fragments extracted= 2 number of extra gaps= 1 total=83068 # 1gvfA.40.14 read from T0547.t06.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)K44 (1gvfA)A19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1gvfA)V20 because P (beta_P) conformation "forbidden" or filtered. T0547 40 :DDGY 1gvfA 15 :ANGY T0547 46 :PLL 1gvfA 21 :PAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=83070 # 1vjrA.40.46 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)P46 (1vjrA)V41 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1vjrA 35 :EKNKRF T0547 47 :LL 1vjrA 42 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=83072 # 1lqtA.40.28 read from T0547.t06.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)G45 (1lqtA)M34 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1lqtA)A35 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYK 1lqtA 29 :TEDLD T0547 47 :LL 1lqtA 36 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=83074 # 2etjA.40.19 read from T0547.t06.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)G42 (2etjA)E10 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2etjA)V14 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DD 2etjA 8 :KK T0547 43 :YKG 2etjA 11 :FGI T0547 47 :LL 2etjA 15 :AG Number of specific fragments extracted= 3 number of extra gaps= 2 total=83077 # 1a5t.40.19 read from T0547.t06.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1a5t 20 :AGRGHH T0547 47 :LL 1a5t 27 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=83079 # 1ug6A.40.107 read from T0547.t06.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)K44 (1ug6A)T112 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1ug6A)F114 because D (zeta) conformation "forbidden" or filtered. T0547 40 :DDGY 1ug6A 108 :ASGI T0547 45 :G 1ug6A 113 :P T0547 47 :LL 1ug6A 115 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=83082 # 1llfA.40.108 read from T0547.t06.many.frag # found chain 1llfA in training set Warning: unaligning (T0547)D40 (1llfA)K109 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1llfA)L114 because P (beta_P) conformation "forbidden" or filtered. T0547 41 :DGYK 1llfA 110 :AGAN T0547 46 :PLL 1llfA 115 :PVM Number of specific fragments extracted= 2 number of extra gaps= 2 total=83084 # 1bcpB.40.157 read from T0547.t06.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)P46 (1bcpB)R164 because D (zeta) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1bcpB 158 :VAGISV T0547 47 :LL 1bcpB 165 :VH Number of specific fragments extracted= 2 number of extra gaps= 1 total=83086 # 2d1pA.40.40 read from T0547.t06.many.frag # found chain 2d1pA in template set Warning: unaligning (T0547)G45 (2d1pA)L34 because N (gamma') conformation "forbidden" or filtered. T0547 40 :DDGYK 2d1pA 29 :ADGHE T0547 46 :PLL 2d1pA 35 :SSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=83088 # 1tz9A.40.65 read from T0547.t06.many.frag # found chain 1tz9A in template set Warning: unaligning (T0547)G45 (1tz9A)L61 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (1tz9A)G63 because Y (epsilon') conformation "forbidden" or filtered. T0547 40 :DDGYK 1tz9A 56 :QEGLA T0547 46 :P 1tz9A 62 :L T0547 48 :L 1tz9A 64 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=83091 # 1wu7A.40.92 read from T0547.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G42 (1wu7A)D95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1wu7A)R98 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DD 1wu7A 93 :RK T0547 43 :YK 1wu7A 96 :LQ T0547 46 :PLL 1wu7A 99 :PLR Number of specific fragments extracted= 3 number of extra gaps= 2 total=83094 # 1m65A.40.28 read from T0547.t06.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)P46 (1m65A)F35 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1m65A 29 :QKGIKL T0547 47 :LL 1m65A 36 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=83096 # 1o7qA.40.44 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 40 :DDGYKGPLL 1o7qA 124 :KQKITVGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=83097 # 2af4C.40.37 read from T0547.t06.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGY 2af4C 38 :ERGI T0547 47 :LL 2af4C 45 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=83099 # 1ybdA.40.43 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)G45 (1ybdA)V51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1ybdA)G52 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYK 1ybdA 46 :KMGVQ T0547 47 :LL 1ybdA 53 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=83101 # 2bjvA.40.24 read from T0547.t06.many.frag # found chain 2bjvA in training set T0547 40 :DDGYKGPLL 2bjvA 25 :LAPLDKPVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83102 # 1zhvA.40.87 read from T0547.t06.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)P46 (1zhvA)F95 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1zhvA 89 :TNGIGI T0547 47 :LL 1zhvA 96 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=83104 # 1v58A.40.93 read from T0547.t06.many.frag # found chain 1v58A in training set Warning: unaligning (T0547)G45 (1v58A)V99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1v58A)I100 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYK 1v58A 94 :KKDAP T0547 47 :LL 1v58A 101 :VY Number of specific fragments extracted= 2 number of extra gaps= 1 total=83106 # 1fyeA.40.27 read from T0547.t06.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)G45 (1fyeA)S33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1fyeA)A34 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYK 1fyeA 28 :LNGRR T0547 47 :LL 1fyeA 35 :VF Number of specific fragments extracted= 2 number of extra gaps= 1 total=83108 # 1yacA.40.48 read from T0547.t06.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)G45 (1yacA)T54 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1yacA)I55 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYK 1yacA 49 :YFNLP T0547 47 :LL 1yacA 56 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=83110 # 1r0mA.40.160 read from T0547.t06.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)P46 (1r0mA)I167 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1r0mA 161 :EQGYRR T0547 47 :LL 1r0mA 168 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=83112 # 1fcqA.40.100 read from T0547.t06.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)G42 (1fcqA)S103 because G (3-10) conformation "forbidden" or filtered. T0547 40 :DD 1fcqA 101 :DK T0547 43 :YKGPLL 1fcqA 104 :FPGVGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=83114 # 1bykA.40.29 read from T0547.t06.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)G45 (1bykA)P95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1bykA)I96 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYK 1bykA 90 :EQGYD T0547 47 :LL 1bykA 97 :MM Number of specific fragments extracted= 2 number of extra gaps= 1 total=83116 # 2bmfA.40.45 read from T0547.t06.many.frag # found chain 2bmfA in template set Warning: unaligning (T0547)K44 (2bmfA)R217 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2bmfA)L219 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGY 2bmfA 213 :KRGL T0547 45 :G 2bmfA 218 :T T0547 47 :LL 2bmfA 220 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=83119 # 1i0dA.40.58 read from T0547.t06.many.frag # found chain 1i0dA in template set Warning: unaligning (T0547)P46 (1i0dA)I98 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYKG 1i0dA 92 :AAGVRT T0547 47 :LL 1i0dA 99 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=83121 # 1y44A.40.80 read from T0547.t06.many.frag # found chain 1y44A in template set T0547 40 :DDGYKGPLL 1y44A 81 :FQGGEDELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=83122 # 1thfD.40.40 read from T0547.t06.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)G45 (1thfD)E46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1thfD)L47 because E (beta_S) conformation "forbidden" or filtered. T0547 40 :DDGYK 1thfD 41 :EIGID T0547 47 :LL 1thfD 48 :VF Number of specific fragments extracted= 2 number of extra gaps= 1 total=83124 # 1t7lA.41.170 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)K44 (1t7lA)E142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 41 :DGY 1t7lA 139 :KGI T0547 45 :G 1t7lA 143 :T T0547 47 :LLL 1t7lA 145 :PWV Number of specific fragments extracted= 3 number of extra gaps= 2 total=83127 # 1ufaA.41.48 read from T0547.t06.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)G45 (1ufaA)A53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (1ufaA)F55 because Y (epsilon') conformation "forbidden" or filtered. T0547 41 :DGYK 1ufaA 49 :EGVE T0547 46 :P 1ufaA 54 :P T0547 48 :LL 1ufaA 56 :TL Number of specific fragments extracted= 3 number of extra gaps= 2 total=83130 # 2bjvA.41.25 read from T0547.t06.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)K44 (2bjvA)D29 because N (gamma') conformation "forbidden" or filtered. T0547 41 :DGY 2bjvA 26 :APL T0547 45 :GPLLL 2bjvA 30 :KPVLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=83132 # 1a5t.41.20 read from T0547.t06.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)D41 (1a5t)G21 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 42 :GYKG 1a5t 22 :RGHH T0547 47 :LLL 1a5t 27 :LLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=83134 # 1gvfA.41.15 read from T0547.t06.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)K44 (1gvfA)A19 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGY 1gvfA 16 :NGY T0547 45 :GPLLL 1gvfA 20 :VPAFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=83136 # 1llfA.41.109 read from T0547.t06.many.frag # found chain 1llfA in training set Warning: unaligning (T0547)K44 (1llfA)N113 because L (left) conformation "forbidden" or filtered. T0547 41 :DGY 1llfA 110 :AGA T0547 45 :GPLLL 1llfA 114 :LPVML Number of specific fragments extracted= 2 number of extra gaps= 1 total=83138 # 2etjA.41.20 read from T0547.t06.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)K44 (2etjA)G12 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (2etjA)I13 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2etjA)V14 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGY 2etjA 9 :KEF T0547 47 :LLL 2etjA 15 :AGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=83140 # 1lqtA.41.29 read from T0547.t06.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)P46 (1lqtA)A35 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1lqtA 30 :EDLDM T0547 47 :LLL 1lqtA 36 :VDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=83142 # 1fcqA.41.101 read from T0547.t06.many.frag # found chain 1fcqA in training set T0547 41 :DGYKGPLLL 1fcqA 102 :KSFPGVGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83143 # 1vjrA.41.47 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)P46 (1vjrA)V41 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1vjrA 36 :KNKRF T0547 47 :LLL 1vjrA 42 :FFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=83145 # 2d1pA.41.41 read from T0547.t06.many.frag # found chain 2d1pA in template set Warning: unaligning (T0547)K44 (2d1pA)E33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (2d1pA)L34 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (2d1pA)S36 because Y (epsilon') conformation "forbidden" or filtered. T0547 41 :DGY 2d1pA 30 :DGH T0547 46 :P 2d1pA 35 :S T0547 48 :LL 2d1pA 37 :VF Number of specific fragments extracted= 3 number of extra gaps= 2 total=83148 # 1byi.41.28 read from T0547.t06.many.frag # found chain 1byi in training set Warning: unaligning (T0547)P46 (1byi)A34 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1byi 29 :AGYRT T0547 47 :LLL 1byi 35 :GYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=83150 # 1ug6A.41.108 read from T0547.t06.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)G45 (1ug6A)P113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1ug6A)F114 because D (zeta) conformation "forbidden" or filtered. T0547 41 :DGYK 1ug6A 109 :SGIT T0547 47 :LLL 1ug6A 115 :LTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=83152 # 1h2wA.41.461 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)G42 (1h2wA)D463 because G (3-10) conformation "forbidden" or filtered. T0547 41 :D 1h2wA 462 :L T0547 43 :YKGPLLL 1h2wA 464 :GSHPAFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=83154 # 1fyeA.41.28 read from T0547.t06.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)D41 (1fyeA)N29 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1fyeA)A34 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :GYKG 1fyeA 30 :GRRS T0547 47 :LLL 1fyeA 35 :VFI Number of specific fragments extracted= 2 number of extra gaps= 2 total=83156 # 1wu7A.41.93 read from T0547.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)P46 (1wu7A)P99 because C (cis) conformation "forbidden" or filtered. T0547 41 :DGYKG 1wu7A 94 :KDLQR T0547 47 :LLL 1wu7A 100 :LRW Number of specific fragments extracted= 2 number of extra gaps= 1 total=83158 # 1thfD.41.41 read from T0547.t06.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)P46 (1thfD)L47 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1thfD 42 :IGIDE T0547 47 :LLL 1thfD 48 :VFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=83160 # 1wb4A.41.101 read from T0547.t06.many.frag # found chain 1wb4A in training set T0547 41 :DGYKGPLLL 1wb4A 890 :NGELEPLIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83161 # 1bcpB.41.158 read from T0547.t06.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)P46 (1bcpB)R164 because D (zeta) conformation "forbidden" or filtered. T0547 41 :DGYKG 1bcpB 159 :AGISV T0547 47 :LLL 1bcpB 165 :VHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=83163 # 2bogX.41.63 read from T0547.t06.many.frag # found chain 2bogX in training set T0547 41 :DGYKGPLLL 2bogX 64 :AGKIPILVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83164 # 1ybdA.41.44 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)G45 (1ybdA)V51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1ybdA)G52 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYK 1ybdA 47 :MGVQ T0547 47 :LLL 1ybdA 53 :IVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=83166 # 1i6lA.41.30 read from T0547.t06.many.frag # found chain 1i6lA in training set Warning: unaligning (T0547)P46 (1i6lA)Y36 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1i6lA 31 :HEYNC T0547 47 :LLL 1i6lA 37 :FCI Number of specific fragments extracted= 2 number of extra gaps= 1 total=83168 # 1yacA.41.49 read from T0547.t06.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)P46 (1yacA)I55 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1yacA 50 :FNLPT T0547 47 :LLL 1yacA 56 :LTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=83170 # 2af4C.41.38 read from T0547.t06.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGY 2af4C 39 :RGI T0547 47 :LLL 2af4C 45 :VLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=83172 # 1v58A.41.94 read from T0547.t06.many.frag # found chain 1v58A in training set Warning: unaligning (T0547)P46 (1v58A)I100 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1v58A 95 :KDAPV T0547 47 :LLL 1v58A 101 :VYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=83174 # 1o7qA.41.45 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 41 :DGYKGPLLL 1o7qA 125 :QKITVGLTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83175 # 1o66A.41.14 read from T0547.t06.many.frag # found chain 1o66A in training set Warning: unaligning (T0547)P46 (1o66A)A18 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYKG 1o66A 13 :AGEKI T0547 47 :LLL 1o66A 19 :MLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=83177 # 1ig0A.41.34 read from T0547.t06.many.frag # found chain 1ig0A in training set Warning: unaligning (T0547)G42 (1ig0A)D36 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1ig0A)T40 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :D 1ig0A 35 :E T0547 43 :YKG 1ig0A 37 :ENS T0547 47 :LLL 1ig0A 41 :LLI Number of specific fragments extracted= 3 number of extra gaps= 2 total=83180 # 1xubA.41.33 read from T0547.t06.many.frag # found chain 1xubA in training set T0547 41 :DGYKGPLLL 1xubA 14 :PLEGNPVAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83181 # 1r0mA.41.161 read from T0547.t06.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)G45 (1r0mA)R166 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1r0mA)I167 because E (beta_S) conformation "forbidden" or filtered. T0547 41 :DGYK 1r0mA 162 :QGYR T0547 47 :LLL 1r0mA 168 :KLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=83183 # 2bjvA.42.26 read from T0547.t06.many.frag # found chain 2bjvA in training set T0547 42 :GYKGPLLLR 2bjvA 27 :PLDKPVLII Number of specific fragments extracted= 1 number of extra gaps= 0 total=83184 # 1t7lA.42.171 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 42 :GYKG 1t7lA 140 :GIET T0547 47 :LLLR 1t7lA 145 :PWVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=83186 # 1ufaA.42.49 read from T0547.t06.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)G45 (1ufaA)A53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (1ufaA)F55 because Y (epsilon') conformation "forbidden" or filtered. T0547 42 :GYK 1ufaA 50 :GVE T0547 46 :P 1ufaA 54 :P T0547 48 :LLR 1ufaA 56 :TLG Number of specific fragments extracted= 3 number of extra gaps= 2 total=83189 # 1a5t.42.21 read from T0547.t06.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)G42 (1a5t)R22 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (1a5t)H24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 43 :Y 1a5t 23 :G T0547 45 :G 1a5t 25 :H T0547 47 :LLLR 1a5t 27 :LLIQ Number of specific fragments extracted= 3 number of extra gaps= 3 total=83192 # 1h2wA.42.462 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)G45 (1h2wA)H466 because P (beta_P) conformation "forbidden" or filtered. T0547 42 :GYK 1h2wA 463 :DGS T0547 46 :PLLLR 1h2wA 467 :PAFLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=83194 # 1ytlA.42.33 read from T0547.t06.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)G45 (1ytlA)R37 because D (zeta) conformation "forbidden" or filtered. T0547 42 :GYK 1ytlA 34 :KAK T0547 46 :PLLLR 1ytlA 38 :PLLIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=83196 # 1llfA.42.110 read from T0547.t06.many.frag # found chain 1llfA in training set Warning: unaligning (T0547)K44 (1llfA)N113 because L (left) conformation "forbidden" or filtered. T0547 42 :GY 1llfA 111 :GA T0547 45 :GPLLLR 1llfA 114 :LPVMLW Number of specific fragments extracted= 2 number of extra gaps= 1 total=83198 # 1gvfA.42.16 read from T0547.t06.many.frag # found chain 1gvfA in training set T0547 42 :GYKGPLLLR 1gvfA 17 :GYAVPAFNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83199 # 1dqzA.42.26 read from T0547.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)Y43 (1dqzA)G30 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1dqzA)A33 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :G 1dqzA 29 :G T0547 44 :KG 1dqzA 31 :PH T0547 47 :LLLR 1dqzA 34 :VYLL Number of specific fragments extracted= 3 number of extra gaps= 2 total=83202 # 2af4C.42.39 read from T0547.t06.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 42 :GY 2af4C 40 :GI T0547 47 :LLL 2af4C 45 :VLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=83204 # 1knwA.42.22 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K44 (1knwA)G25 because S (epsilon) conformation "forbidden" or filtered. T0547 42 :GY 1knwA 23 :EF T0547 45 :GPLLLR 1knwA 26 :CPVWVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=83206 # 1epuA.42.21 read from T0547.t06.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)G45 (1epuA)W25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1epuA)K26 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :GYK 1epuA 22 :NAE T0547 47 :LLLR 1epuA 27 :VLIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=83208 # 7odcA.42.34 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L47 (7odcA)F40 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :KGP 7odcA 37 :KDA T0547 48 :LLR 7odcA 41 :YVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=83210 # 1yt8A.42.60 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G45 (1yt8A)T64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1yt8A)Y69 because Y (epsilon') conformation "forbidden" or filtered. T0547 42 :GYK 1yt8A 61 :RRD T0547 46 :PLLL 1yt8A 65 :PITV Number of specific fragments extracted= 2 number of extra gaps= 2 total=83212 # 1thtA.42.32 read from T0547.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)G45 (1thtA)N36 because P (beta_P) conformation "forbidden" or filtered. T0547 42 :GYK 1thtA 33 :FKN T0547 46 :PLLLR 1thtA 37 :TILIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=83214 # 1wb4A.42.102 read from T0547.t06.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)G45 (1wb4A)E894 because P (beta_P) conformation "forbidden" or filtered. T0547 42 :GYK 1wb4A 891 :GEL T0547 46 :PLLLR 1wb4A 895 :PLIVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=83216 # 1wu7A.42.94 read from T0547.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G42 (1wu7A)D95 because G (3-10) conformation "forbidden" or filtered. T0547 43 :YKGPLLLR 1wu7A 96 :LQRPLRWY Number of specific fragments extracted= 1 number of extra gaps= 1 total=83217 # 1j2rA.42.16 read from T0547.t06.many.frag # found chain 1j2rA in training set Warning: unaligning (T0547)P46 (1j2rA)A21 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :GYKG 1j2rA 17 :AKTT T0547 47 :LLLR 1j2rA 22 :LVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=83219 # 1lqtA.42.30 read from T0547.t06.many.frag # found chain 1lqtA in training set Warning: unaligning (T0547)P46 (1lqtA)A35 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :GYKG 1lqtA 31 :DLDM T0547 47 :LLLR 1lqtA 36 :VDML Number of specific fragments extracted= 2 number of extra gaps= 1 total=83221 # 1sg6A.42.34 read from T0547.t06.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)G42 (1sg6A)S35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1sg6A)Y39 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YKG 1sg6A 36 :STT T0547 47 :LLLR 1sg6A 40 :VLVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=83223 # 1v58A.42.95 read from T0547.t06.many.frag # found chain 1v58A in training set Warning: unaligning (T0547)G45 (1v58A)V99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1v58A)I100 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1v58A)F104 because P (beta_P) conformation "forbidden" or filtered. T0547 42 :GYK 1v58A 96 :DAP T0547 47 :LLL 1v58A 101 :VYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=83225 # 1fcqA.42.102 read from T0547.t06.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)G42 (1fcqA)S103 because G (3-10) conformation "forbidden" or filtered. T0547 43 :YKGPLLLR 1fcqA 104 :FPGVGVID Number of specific fragments extracted= 1 number of extra gaps= 1 total=83226 # 2etjA.42.21 read from T0547.t06.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)G42 (2etjA)E10 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K44 (2etjA)G12 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (2etjA)I13 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (2etjA)V14 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (2etjA)D18 because Y (epsilon') conformation "forbidden" or filtered. T0547 43 :Y 2etjA 11 :F T0547 47 :LLL 2etjA 15 :AGV Number of specific fragments extracted= 2 number of extra gaps= 3 total=83228 # 2bogX.42.64 read from T0547.t06.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)G45 (2bogX)P68 because P (beta_P) conformation "forbidden" or filtered. T0547 42 :GYK 2bogX 65 :GKI T0547 46 :PLLLR 2bogX 69 :ILVVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=83230 # 1ybdA.42.45 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)P46 (1ybdA)G52 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :GYKG 1ybdA 48 :GVQV T0547 47 :LLLR 1ybdA 53 :IVVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=83232 # 2d1pA.42.42 read from T0547.t06.many.frag # found chain 2d1pA in template set Warning: unaligning (T0547)G45 (2d1pA)L34 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (2d1pA)S36 because Y (epsilon') conformation "forbidden" or filtered. T0547 42 :GYK 2d1pA 31 :GHE T0547 46 :P 2d1pA 35 :S T0547 48 :LLR 2d1pA 37 :VFF Number of specific fragments extracted= 3 number of extra gaps= 2 total=83235 # 1uc2A.42.20 read from T0547.t06.many.frag # found chain 1uc2A in template set T0547 42 :GYKGPLLLR 1uc2A 21 :RMRVPGRVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=83236 # 1yacA.42.9 read from T0547.t06.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)G45 (1yacA)A13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1yacA)A14 because E (beta_S) conformation "forbidden" or filtered. T0547 42 :GYK 1yacA 10 :KND T0547 47 :LLLR 1yacA 15 :VLLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=83238 # 1ug6A.42.109 read from T0547.t06.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)P46 (1ug6A)F114 because D (zeta) conformation "forbidden" or filtered. T0547 42 :GYKG 1ug6A 110 :GITP T0547 47 :LLLR 1ug6A 115 :LTLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=83240 # 1bcpB.42.159 read from T0547.t06.many.frag # found chain 1bcpB in template set Warning: unaligning (T0547)P46 (1bcpB)R164 because D (zeta) conformation "forbidden" or filtered. T0547 42 :GYKG 1bcpB 160 :GISV T0547 47 :LLLR 1bcpB 165 :VHVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=83242 # 1knwA.43.23 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K44 (1knwA)G25 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1knwA)C26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1knwA)P27 because C (cis) conformation "forbidden" or filtered. T0547 43 :Y 1knwA 24 :F T0547 47 :LLLRF 1knwA 28 :VWVYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=83244 # 2bjvA.43.27 read from T0547.t06.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)G45 (2bjvA)K30 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YK 2bjvA 28 :LD T0547 46 :PLLLRF 2bjvA 31 :PVLIIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=83246 # 1ytlA.43.34 read from T0547.t06.many.frag # found chain 1ytlA in training set T0547 43 :YKGPLLLRF 1ytlA 35 :AKRPLLIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83247 # 7odcA.43.35 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)D36 Warning: unaligning (T0547)L47 (7odcA)F40 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :KGP 7odcA 37 :KDA T0547 48 :LLRF 7odcA 41 :YVAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=83249 # 1h2wA.43.463 read from T0547.t06.many.frag # found chain 1h2wA in training set T0547 43 :YKGPLLLRF 1h2wA 464 :GSHPAFLYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83250 # 1t7lA.43.172 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 43 :YKG 1t7lA 141 :IET T0547 47 :LLLRF 1t7lA 145 :PWVIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=83252 # 2af4C.43.40 read from T0547.t06.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 43 :Y 2af4C 41 :I T0547 47 :LLL 2af4C 45 :VLV T0547 51 :F 2af4C 49 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=83255 # 1ufaA.43.50 read from T0547.t06.many.frag # found chain 1ufaA in template set T0547 43 :YKGPLLLRF 1ufaA 51 :VEAPFTLGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83256 # 1dqzA.43.27 read from T0547.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)P46 (1dqzA)A33 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YKG 1dqzA 30 :GPH T0547 47 :LLLRF 1dqzA 34 :VYLLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=83258 # 1a5t.43.22 read from T0547.t06.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 43 :YKG 1a5t 23 :GHH T0547 47 :LLLRF 1a5t 27 :LLIQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=83260 # 1uc2A.43.21 read from T0547.t06.many.frag # found chain 1uc2A in template set T0547 43 :YKGPLLLRF 1uc2A 22 :MRVPGRVYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83261 # 1yt8A.43.61 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G45 (1yt8A)T64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1yt8A)Y69 because Y (epsilon') conformation "forbidden" or filtered. T0547 43 :YK 1yt8A 62 :RD T0547 46 :PLLL 1yt8A 65 :PITV T0547 51 :F 1yt8A 70 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=83264 # 1o4wA.43.20 read from T0547.t06.many.frag # found chain 1o4wA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1o4wA)K10 Warning: unaligning (T0547)G45 (1o4wA)V11 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1o4wA)R12 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRF 1o4wA 13 :CAVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83265 # 1qlwA.43.94 read from T0547.t06.many.frag # found chain 1qlwA in training set Warning: unaligning (T0547)R50 because of BadResidue code BAD_PEPTIDE in next template residue (1qlwA)D103 Warning: unaligning (T0547)F51 because of BadResidue code BAD_PEPTIDE at template residue (1qlwA)D103 T0547 43 :YKGPLLL 1qlwA 95 :KGYSTYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=83266 # 1j2rA.43.17 read from T0547.t06.many.frag # found chain 1j2rA in training set Warning: unaligning (T0547)G45 (1j2rA)T20 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1j2rA)A21 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YK 1j2rA 18 :KT T0547 47 :LLLRF 1j2rA 22 :LVVID Number of specific fragments extracted= 2 number of extra gaps= 1 total=83268 # 1gvfA.43.17 read from T0547.t06.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)G45 (1gvfA)V20 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F51 (1gvfA)H26 because G (3-10) conformation "forbidden" or filtered. T0547 43 :YK 1gvfA 18 :YA T0547 46 :PLLLR 1gvfA 21 :PAFNI Number of specific fragments extracted= 2 number of extra gaps= 2 total=83270 # 1llfA.43.111 read from T0547.t06.many.frag # found chain 1llfA in training set Warning: unaligning (T0547)K44 (1llfA)N113 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1llfA)L114 because P (beta_P) conformation "forbidden" or filtered. T0547 43 :Y 1llfA 112 :A T0547 46 :PLLLRF 1llfA 115 :PVMLWI Number of specific fragments extracted= 2 number of extra gaps= 1 total=83272 # 1epuA.43.22 read from T0547.t06.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)Y43 (1epuA)A23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1epuA)W25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1epuA)K26 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :K 1epuA 24 :E T0547 47 :LLLRF 1epuA 27 :VLIVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=83274 # 1sg6A.43.35 read from T0547.t06.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)P46 (1sg6A)Y39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1sg6A)T43 because Y (epsilon') conformation "forbidden" or filtered. T0547 43 :YKG 1sg6A 36 :STT T0547 47 :LLL 1sg6A 40 :VLV T0547 51 :F 1sg6A 44 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=83277 # 1wu7A.43.95 read from T0547.t06.many.frag # found chain 1wu7A in template set T0547 43 :YKGPLLLRF 1wu7A 96 :LQRPLRWYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=83278 # 1ybdA.43.46 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)K44 (1ybdA)Q50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1ybdA)G52 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :Y 1ybdA 49 :V T0547 45 :G 1ybdA 51 :V T0547 47 :LLLRF 1ybdA 53 :IVVGG Number of specific fragments extracted= 3 number of extra gaps= 2 total=83281 # 1wb4A.43.103 read from T0547.t06.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)L47 (1wb4A)L896 because Y (epsilon') conformation "forbidden" or filtered. T0547 43 :YKGP 1wb4A 892 :ELEP T0547 48 :LLRF 1wb4A 897 :IVVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=83283 # 1sg6A.43.34 read from T0547.t06.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)K44 (1sg6A)S36 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1sg6A)T38 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :Y 1sg6A 35 :S T0547 45 :G 1sg6A 37 :T T0547 47 :LLLRF 1sg6A 39 :YVLVT Number of specific fragments extracted= 3 number of extra gaps= 2 total=83286 # 1thtA.43.33 read from T0547.t06.many.frag # found chain 1thtA in template set T0547 43 :YKGPLLLRF 1thtA 34 :KNNTILIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=83287 # 1qlwA.43.60 read from T0547.t06.many.frag # found chain 1qlwA in training set T0547 43 :YKGPLLLRF 1qlwA 61 :KRYPITLIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=83288 # 1v58A.43.96 read from T0547.t06.many.frag # found chain 1v58A in training set Warning: unaligning (T0547)P46 (1v58A)I100 because E (beta_S) conformation "forbidden" or filtered. T0547 43 :YKG 1v58A 97 :APV T0547 47 :LLLRF 1v58A 101 :VYVFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=83290 # 2b20A.43.194 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)K44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2b20A)E193 Warning: unaligning (T0547)G45 (2b20A)R194 because P (beta_P) conformation "forbidden" or filtered. T0547 46 :PLLLRF 2b20A 195 :PLAVLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83291 # 2bogX.43.65 read from T0547.t06.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)G45 (2bogX)P68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F51 (2bogX)N74 because G (3-10) conformation "forbidden" or filtered. T0547 43 :YK 2bogX 66 :KI T0547 46 :PLLLR 2bogX 69 :ILVVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=83293 # 2b20A.43.195 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)Y43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2b20A)E193 Warning: unaligning (T0547)F51 (2b20A)D201 because L (left) conformation "forbidden" or filtered. T0547 44 :KGPLLLR 2b20A 194 :RPLAVLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=83294 # 1ei9A.43.3 read from T0547.t06.many.frag # found chain 1ei9A in template set Warning: unaligning (T0547)G45 (1ei9A)L33 because P (beta_P) conformation "forbidden" or filtered. T0547 43 :YK 1ei9A 31 :AP T0547 46 :PLLLRF 1ei9A 34 :PLVIWH Number of specific fragments extracted= 2 number of extra gaps= 1 total=83296 # 1knwA.44.24 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 44 :KGPLLLRFP 1knwA 25 :GCPVWVYDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83297 # 1ytlA.44.35 read from T0547.t06.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)G45 (1ytlA)R37 because D (zeta) conformation "forbidden" or filtered. T0547 44 :K 1ytlA 36 :K T0547 46 :PLLLRFP 1ytlA 38 :PLLIVGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=83299 # 7odcA.44.36 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G45 (7odcA)D38 because P (beta_P) conformation "forbidden" or filtered. T0547 44 :K 7odcA 37 :K T0547 46 :PLLLRFP 7odcA 39 :AFYVADL Number of specific fragments extracted= 2 number of extra gaps= 1 total=83301 # 2bjvA.44.28 read from T0547.t06.many.frag # found chain 2bjvA in training set T0547 44 :KGPLLLRFP 2bjvA 29 :DKPVLIIGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83302 # 2af4C.44.41 read from T0547.t06.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)K44 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2af4C)D43 Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLL 2af4C 45 :VLV T0547 51 :FP 2af4C 49 :NE Number of specific fragments extracted= 2 number of extra gaps= 2 total=83304 # 1uc2A.44.22 read from T0547.t06.many.frag # found chain 1uc2A in template set T0547 44 :KGPLLLRFP 1uc2A 23 :RVPGRVYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83305 # 1o4wA.44.21 read from T0547.t06.many.frag # found chain 1o4wA in template set Warning: unaligning (T0547)K44 because first residue in template chain is (1o4wA)K10 Warning: unaligning (T0547)P46 (1o4wA)R12 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1o4wA 11 :V T0547 47 :LLLRFP 1o4wA 13 :CAVVDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=83307 # 1h2wA.44.464 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)G45 (1h2wA)H466 because P (beta_P) conformation "forbidden" or filtered. T0547 44 :K 1h2wA 465 :S T0547 46 :PLLLRFP 1h2wA 467 :PAFLYGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=83309 # 1dqzA.44.28 read from T0547.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)G45 (1dqzA)H32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1dqzA)A33 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :K 1dqzA 31 :P T0547 47 :LLLRFP 1dqzA 34 :VYLLDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=83311 # 1a5t.44.23 read from T0547.t06.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 44 :KG 1a5t 24 :HH T0547 47 :LLLRFP 1a5t 27 :LLIQAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=83313 # 1t7lA.44.173 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1t7lA)I148 because P (beta_P) conformation "forbidden" or filtered. T0547 44 :KG 1t7lA 142 :ET T0547 47 :LLL 1t7lA 145 :PWV T0547 51 :FP 1t7lA 149 :GP Number of specific fragments extracted= 3 number of extra gaps= 2 total=83316 # 1j2rA.44.18 read from T0547.t06.many.frag # found chain 1j2rA in training set Warning: unaligning (T0547)P46 (1j2rA)A21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F51 (1j2rA)D26 because L (left) conformation "forbidden" or filtered. T0547 44 :KG 1j2rA 19 :TT T0547 47 :LLLR 1j2rA 22 :LVVI T0547 52 :P 1j2rA 27 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=83319 # 1yt8A.44.62 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G45 (1yt8A)T64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1yt8A)Y69 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F51 (1yt8A)D70 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1yt8A)D71 because G (3-10) conformation "forbidden" or filtered. T0547 44 :K 1yt8A 63 :D T0547 46 :PLLL 1yt8A 65 :PITV Number of specific fragments extracted= 2 number of extra gaps= 2 total=83321 # 1qlwA.44.95 read from T0547.t06.many.frag # found chain 1qlwA in training set Warning: unaligning (T0547)R50 because of BadResidue code BAD_PEPTIDE in next template residue (1qlwA)D103 Warning: unaligning (T0547)F51 because of BadResidue code BAD_PEPTIDE at template residue (1qlwA)D103 T0547 44 :KGPLLL 1qlwA 96 :GYSTYV T0547 52 :P 1qlwA 104 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=83323 # 1ybdA.44.47 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)P46 (1ybdA)G52 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :KG 1ybdA 50 :QV T0547 47 :LLLRFP 1ybdA 53 :IVVGGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=83325 # 1sg6A.44.36 read from T0547.t06.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)P46 (1sg6A)Y39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1sg6A)T43 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :KG 1sg6A 37 :TT T0547 47 :LLL 1sg6A 40 :VLV T0547 51 :FP 1sg6A 44 :DT Number of specific fragments extracted= 3 number of extra gaps= 2 total=83328 # 1ufaA.44.51 read from T0547.t06.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)G45 (1ufaA)A53 because D (zeta) conformation "forbidden" or filtered. T0547 44 :K 1ufaA 52 :E T0547 46 :PLLLRFP 1ufaA 54 :PFTLGIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=83330 # 1epuA.44.23 read from T0547.t06.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)K44 (1epuA)E24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1epuA)K26 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1epuA 25 :W T0547 47 :LLLRFP 1epuA 27 :VLIVDQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=83332 # 1llfA.44.112 read from T0547.t06.many.frag # found chain 1llfA in training set Warning: unaligning (T0547)K44 (1llfA)N113 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1llfA)L114 because P (beta_P) conformation "forbidden" or filtered. T0547 46 :PLLLRFP 1llfA 115 :PVMLWIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=83333 # 1gvfA.44.18 read from T0547.t06.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)P52 (1gvfA)N27 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :KGPLLLRF 1gvfA 19 :AVPAFNIH Number of specific fragments extracted= 1 number of extra gaps= 1 total=83334 # 1sg6A.44.35 read from T0547.t06.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)K44 (1sg6A)S36 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1sg6A)T38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1sg6A)D44 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1sg6A 37 :T T0547 47 :LLLRF 1sg6A 39 :YVLVT Number of specific fragments extracted= 2 number of extra gaps= 3 total=83336 # 1onrA.44.26 read from T0547.t06.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)K44 (1onrA)Q28 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (1onrA)P29 because P (beta_P) conformation "forbidden" or filtered. T0547 46 :PLLLRFP 1onrA 30 :QDATTNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=83337 # 1v58A.44.97 read from T0547.t06.many.frag # found chain 1v58A in training set Warning: unaligning (T0547)P46 (1v58A)I100 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1v58A)D106 because E (beta_S) conformation "forbidden" or filtered. T0547 44 :KG 1v58A 98 :PV T0547 47 :LLLRF 1v58A 101 :VYVFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=83339 # 1qlwA.44.61 read from T0547.t06.many.frag # found chain 1qlwA in training set Warning: unaligning (T0547)P52 (1qlwA)G70 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :KGPLLLRF 1qlwA 62 :RYPITLIH Number of specific fragments extracted= 1 number of extra gaps= 1 total=83340 # 2d1pA.44.44 read from T0547.t06.many.frag # found chain 2d1pA in template set Warning: unaligning (T0547)G45 (2d1pA)L34 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 (2d1pA)S36 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (2d1pA)R41 because S (epsilon) conformation "forbidden" or filtered. T0547 44 :K 2d1pA 33 :E T0547 46 :P 2d1pA 35 :S T0547 48 :LLRF 2d1pA 37 :VFFY Number of specific fragments extracted= 3 number of extra gaps= 3 total=83343 # 2b20A.44.196 read from T0547.t06.many.frag # found chain 2b20A in template set T0547 44 :KGPLLLRFP 2b20A 194 :RPLAVLLDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83344 # 2bogX.44.66 read from T0547.t06.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)K44 (2bogX)I67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G45 (2bogX)P68 because P (beta_P) conformation "forbidden" or filtered. T0547 46 :PLLLRFP 2bogX 69 :ILVVSNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=83345 # 2b20A.44.195 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)K44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2b20A)E193 Warning: unaligning (T0547)G45 (2b20A)R194 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (2b20A)D201 because L (left) conformation "forbidden" or filtered. T0547 46 :PLLLRF 2b20A 195 :PLAVLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=83346 # 1thtA.44.34 read from T0547.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)G45 (1thtA)N36 because P (beta_P) conformation "forbidden" or filtered. T0547 44 :K 1thtA 35 :N T0547 46 :PLLLRFP 1thtA 37 :TILIASG Number of specific fragments extracted= 2 number of extra gaps= 1 total=83348 # 1p1xA.44.42 read from T0547.t06.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)L47 because of BadResidue code BAD_PEPTIDE in next template residue (1p1xA)I46 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE at template residue (1p1xA)I46 Warning: unaligning (T0547)R50 (1p1xA)I48 because Y (epsilon') conformation "forbidden" or filtered. T0547 44 :KGP 1p1xA 42 :NTA T0547 49 :L 1p1xA 47 :C T0547 51 :FP 1p1xA 49 :YP Number of specific fragments extracted= 3 number of extra gaps= 2 total=83351 # 1knwA.45.25 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 45 :GPLLLRFPH 1knwA 26 :CPVWVYDAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83352 # 2af4C.45.42 read from T0547.t06.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)G45 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2af4C)D43 Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLL 2af4C 45 :VLV T0547 51 :FPH 2af4C 49 :NEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=83354 # 7odcA.45.37 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L47 (7odcA)F40 because Y (epsilon') conformation "forbidden" or filtered. T0547 45 :GP 7odcA 38 :DA T0547 48 :LLRFPH 7odcA 41 :YVADLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=83356 # 1uc2A.45.23 read from T0547.t06.many.frag # found chain 1uc2A in template set T0547 45 :GPLLLRFPH 1uc2A 24 :VPGRVYADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83357 # 1o4wA.45.22 read from T0547.t06.many.frag # found chain 1o4wA in template set Warning: unaligning (T0547)P46 (1o4wA)R12 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1o4wA 11 :V T0547 47 :LLLRFPH 1o4wA 13 :CAVVDTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=83359 # 2bjvA.45.29 read from T0547.t06.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)G45 (2bjvA)K30 because E (beta_S) conformation "forbidden" or filtered. T0547 46 :PLLLRFPH 2bjvA 31 :PVLIIGER Number of specific fragments extracted= 1 number of extra gaps= 1 total=83360 # 1ytlA.45.36 read from T0547.t06.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)G45 (1ytlA)R37 because D (zeta) conformation "forbidden" or filtered. T0547 46 :PLLLRFPH 1ytlA 38 :PLLIVGPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=83361 # 1epuA.45.24 read from T0547.t06.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)P46 (1epuA)K26 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1epuA 25 :W T0547 47 :LLLRFPH 1epuA 27 :VLIVDQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=83363 # 1a5t.45.24 read from T0547.t06.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. T0547 45 :G 1a5t 25 :H T0547 47 :LLLRFPH 1a5t 27 :LLIQALP Number of specific fragments extracted= 2 number of extra gaps= 1 total=83365 # 1ybdA.45.48 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)P46 (1ybdA)G52 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1ybdA 51 :V T0547 47 :LLLRFPH 1ybdA 53 :IVVGGGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=83367 # 1sg6A.45.37 read from T0547.t06.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)P46 (1sg6A)Y39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1sg6A)T43 because Y (epsilon') conformation "forbidden" or filtered. T0547 45 :G 1sg6A 38 :T T0547 47 :LLL 1sg6A 40 :VLV T0547 51 :FPH 1sg6A 44 :DTN Number of specific fragments extracted= 3 number of extra gaps= 2 total=83370 # 1yt8A.45.63 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G45 (1yt8A)T64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1yt8A)Y69 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1yt8A)D71 because G (3-10) conformation "forbidden" or filtered. T0547 46 :PLLL 1yt8A 65 :PITV T0547 51 :F 1yt8A 70 :D T0547 53 :H 1yt8A 72 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=83373 # 1h2wA.45.465 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)H53 (1h2wA)G474 because L (left) conformation "forbidden" or filtered. T0547 45 :GPLLLRFP 1h2wA 466 :HPAFLYGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=83374 # 1gmxA.45.21 read from T0547.t06.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)G45 (1gmxA)V22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPH 1gmxA 24 :VDIRDPQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=83375 # 1dqzA.45.29 read from T0547.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)G45 (1dqzA)H32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1dqzA)A33 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPH 1dqzA 34 :VYLLDGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=83376 # 1gvfA.45.19 read from T0547.t06.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)P52 (1gvfA)N27 because Y (epsilon') conformation "forbidden" or filtered. T0547 45 :GPLLLRF 1gvfA 20 :VPAFNIH T0547 53 :H 1gvfA 28 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=83378 # 1rcqA.45.2 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G45 (1rcqA)P3 because G (3-10) conformation "forbidden" or filtered. T0547 46 :PLLLRFPH 1rcqA 4 :ARALIDLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=83379 # 1onrA.45.27 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 45 :GPLLLRFPH 1onrA 29 :PQDATTNPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=83380 # 1jayA.45.26 read from T0547.t06.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)P46 (1jayA)V28 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1jayA 27 :I T0547 47 :LLLRFPH 1jayA 29 :VGSRREE Number of specific fragments extracted= 2 number of extra gaps= 1 total=83382 # 1sg6A.45.36 read from T0547.t06.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)P46 (1sg6A)T38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1sg6A)D44 because E (beta_S) conformation "forbidden" or filtered. T0547 45 :G 1sg6A 37 :T T0547 47 :LLLRF 1sg6A 39 :YVLVT T0547 53 :H 1sg6A 45 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=83385 # 1m1nB.45.84 read from T0547.t06.many.frag # found chain 1m1nB in training set Warning: unaligning (T0547)R50 (1m1nB)G91 because S (epsilon) conformation "forbidden" or filtered. T0547 45 :GPLLL 1m1nB 86 :MPYVH T0547 51 :FPH 1m1nB 92 :SQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=83387 # 1owlA.45.31 read from T0547.t06.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)G45 (1owlA)I32 because E (beta_S) conformation "forbidden" or filtered. T0547 46 :PLLLRFPH 1owlA 33 :GLFCLDPQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=83388 # 1p1xA.45.43 read from T0547.t06.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)G45 (1p1xA)T43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L47 because of BadResidue code BAD_PEPTIDE in next template residue (1p1xA)I46 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE at template residue (1p1xA)I46 T0547 46 :P 1p1xA 44 :A T0547 49 :LRFPH 1p1xA 47 :CIYPR Number of specific fragments extracted= 2 number of extra gaps= 2 total=83390 # 1w8sA.45.17 read from T0547.t06.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)G45 (1w8sA)S18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1w8sA)I19 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPH 1w8sA 20 :ILAYDHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=83391 # 1ryoA.45.4 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P52 (1ryoA)S12 because S (epsilon) conformation "forbidden" or filtered. T0547 45 :GPLLLRF 1ryoA 5 :TVRWCAV T0547 53 :H 1ryoA 13 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=83393 # 1tif.45.54 read from T0547.t06.many.frag # found chain 1tif in training set Warning: unaligning (T0547)G45 (1tif)P55 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1tif)M60 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :PLLL 1tif 56 :VCRI T0547 51 :FPH 1tif 61 :DYG Number of specific fragments extracted= 2 number of extra gaps= 2 total=83395 # 1qlwA.45.96 read from T0547.t06.many.frag # found chain 1qlwA in training set Warning: unaligning (T0547)R50 because of BadResidue code BAD_PEPTIDE in next template residue (1qlwA)D103 Warning: unaligning (T0547)F51 because of BadResidue code BAD_PEPTIDE at template residue (1qlwA)D103 T0547 45 :GPLLL 1qlwA 97 :YSTYV T0547 52 :PH 1qlwA 104 :QS Number of specific fragments extracted= 2 number of extra gaps= 1 total=83397 # 1t7lA.45.174 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)G45 (1t7lA)T143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1t7lA)A144 because D (zeta) conformation "forbidden" or filtered. T0547 47 :LLLRFPH 1t7lA 145 :PWVIGPF Number of specific fragments extracted= 1 number of extra gaps= 1 total=83398 # 1j2rA.45.19 read from T0547.t06.many.frag # found chain 1j2rA in training set Warning: unaligning (T0547)G45 (1j2rA)T20 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P46 (1j2rA)A21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F51 (1j2rA)D26 because L (left) conformation "forbidden" or filtered. T0547 47 :LLLR 1j2rA 22 :LVVI T0547 52 :PH 1j2rA 27 :LQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=83400 # 2b20A.45.197 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)F51 (2b20A)D201 because L (left) conformation "forbidden" or filtered. T0547 45 :GPLLLR 2b20A 195 :PLAVLL T0547 52 :PH 2b20A 202 :GE Number of specific fragments extracted= 2 number of extra gaps= 1 total=83402 # 1knwA.46.26 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 46 :PLLLRFPHL 1knwA 27 :PVWVYDAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83403 # 7odcA.46.38 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L47 (7odcA)F40 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :P 7odcA 39 :A T0547 48 :LLRFPHL 7odcA 41 :YVADLGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=83405 # 1o4wA.46.23 read from T0547.t06.many.frag # found chain 1o4wA in template set Warning: unaligning (T0547)P46 (1o4wA)R12 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1o4wA 13 :CAVVDTNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=83406 # 1uc2A.46.24 read from T0547.t06.many.frag # found chain 1uc2A in template set T0547 46 :PLLLRFPHL 1uc2A 25 :PGRVYADEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83407 # 2af4C.46.43 read from T0547.t06.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)P46 (2af4C)I44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLL 2af4C 45 :VLV T0547 51 :FPHL 2af4C 49 :NEAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=83409 # 1rcqA.46.3 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 46 :PLLLRFPHL 1rcqA 4 :ARALIDLQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83410 # 1gmxA.46.22 read from T0547.t06.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)P46 (1gmxA)L23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1gmxA)R27 because P (beta_P) conformation "forbidden" or filtered. T0547 47 :LLL 1gmxA 24 :VDI T0547 51 :FPHL 1gmxA 28 :DPQS Number of specific fragments extracted= 2 number of extra gaps= 2 total=83412 # 1onrA.46.28 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 46 :PLLLRFPHL 1onrA 30 :QDATTNPSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83413 # 1epuA.46.25 read from T0547.t06.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)P46 (1epuA)K26 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1epuA 27 :VLIVDQLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=83414 # 1lvaA.46.54 read from T0547.t06.many.frag # found chain 1lvaA in template set Warning: unaligning (T0547)P46 (1lvaA)D431 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1lvaA 432 :LYAISTER Number of specific fragments extracted= 1 number of extra gaps= 1 total=83415 # 1p1xA.46.44 read from T0547.t06.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)L47 because of BadResidue code BAD_PEPTIDE in next template residue (1p1xA)I46 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE at template residue (1p1xA)I46 Warning: unaligning (T0547)R50 (1p1xA)I48 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :P 1p1xA 44 :A T0547 49 :L 1p1xA 47 :C T0547 51 :FPHL 1p1xA 49 :YPRF Number of specific fragments extracted= 3 number of extra gaps= 2 total=83418 # 2bjvA.46.30 read from T0547.t06.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)L54 (2bjvA)G39 because T (delta_L) conformation "forbidden" or filtered. T0547 46 :PLLLRFPH 2bjvA 31 :PVLIIGER Number of specific fragments extracted= 1 number of extra gaps= 1 total=83419 # 1jayA.46.27 read from T0547.t06.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)P46 (1jayA)V28 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1jayA 29 :VGSRREEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=83420 # 1owlA.46.32 read from T0547.t06.many.frag # found chain 1owlA in training set T0547 46 :PLLLRFPHL 1owlA 33 :GLFCLDPQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83421 # 1ryoA.46.5 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 46 :PLLLRFPHL 1ryoA 6 :VRWCAVSEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=83422 # 1ybdA.46.49 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)P46 (1ybdA)G52 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1ybdA 53 :IVVGGGNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=83423 # 1bjt.46.35 read from T0547.t06.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)P46 (1bjt)T444 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1bjt 445 :LVLTEGDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=83424 # 1yt8A.46.64 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)R50 (1yt8A)Y69 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1yt8A)D71 because G (3-10) conformation "forbidden" or filtered. T0547 46 :PLLL 1yt8A 65 :PITV T0547 51 :F 1yt8A 70 :D T0547 53 :HL 1yt8A 72 :GE Number of specific fragments extracted= 3 number of extra gaps= 2 total=83427 # 1sg6A.46.38 read from T0547.t06.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)P46 (1sg6A)Y39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1sg6A)T43 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLL 1sg6A 40 :VLV T0547 51 :FPHL 1sg6A 44 :DTNI Number of specific fragments extracted= 2 number of extra gaps= 2 total=83429 # 1pq4A.46.131 read from T0547.t06.many.frag # found chain 1pq4A in template set T0547 46 :PLLLRFPHL 1pq4A 178 :PHIWLSPTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83430 # 1m1nB.46.85 read from T0547.t06.many.frag # found chain 1m1nB in training set Warning: unaligning (T0547)R50 (1m1nB)G91 because S (epsilon) conformation "forbidden" or filtered. T0547 46 :PLLL 1m1nB 87 :PYVH T0547 51 :FPHL 1m1nB 92 :SQGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=83432 # 2b8eA.46.90 read from T0547.t06.many.frag # found chain 2b8eA in template set Warning: unaligning (T0547)P46 because of BadResidue code BAD_PEPTIDE at template residue (2b8eA)G497 Warning: unaligning (T0547)L47 because of BadResidue code BAD_PEPTIDE at template residue (2b8eA)I498 T0547 48 :LLRFPHL 2b8eA 499 :LVGNKRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=83433 # 1tif.46.55 read from T0547.t06.many.frag # found chain 1tif in training set Warning: unaligning (T0547)R50 (1tif)M60 because Y (epsilon') conformation "forbidden" or filtered. T0547 46 :PLLL 1tif 56 :VCRI T0547 51 :FPHL 1tif 61 :DYGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=83435 # 1a5t.46.25 read from T0547.t06.many.frag # found chain 1a5t in template set Warning: unaligning (T0547)P46 (1a5t)A26 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L54 (1a5t)G34 because T (delta_L) conformation "forbidden" or filtered. T0547 47 :LLLRFPH 1a5t 27 :LLIQALP Number of specific fragments extracted= 1 number of extra gaps= 2 total=83436 # 1gqiA.46.28 read from T0547.t06.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)P46 (1gqiA)L33 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1gqiA 34 :HVAGDSPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=83437 # 1ptmA.46.33 read from T0547.t06.many.frag # found chain 1ptmA in template set T0547 46 :PLLLRFPHL 1ptmA 34 :LVVCADATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83438 # 1vpqA.46.79 read from T0547.t06.many.frag # found chain 1vpqA in template set Warning: unaligning (T0547)P46 (1vpqA)Y68 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRFPHL 1vpqA 69 :FTVKTPGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=83439 # 1mgtA.46.26 read from T0547.t06.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)P46 (1mgtA)I27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L48 (1mgtA)F29 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :L 1mgtA 28 :A T0547 49 :LRFPHL 1mgtA 30 :AFDRGT Number of specific fragments extracted= 2 number of extra gaps= 2 total=83441 # 1zhaA.46.9 read from T0547.t06.many.frag # found chain 1zhaA in template set T0547 46 :PLLLRFPHL 1zhaA 1010 :PCAIESEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83442 # 1sg6A.46.37 read from T0547.t06.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)P46 (1sg6A)T38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1sg6A)D44 because E (beta_S) conformation "forbidden" or filtered. T0547 47 :LLLRF 1sg6A 39 :YVLVT T0547 53 :HL 1sg6A 45 :TN Number of specific fragments extracted= 2 number of extra gaps= 2 total=83444 # 1knwA.47.27 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 47 :LLLRFPHLI 1knwA 28 :VWVYDAQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=83445 # 1o4wA.47.24 read from T0547.t06.many.frag # found chain 1o4wA in template set T0547 47 :LLLRFPHLI 1o4wA 13 :CAVVDTNVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83446 # 7odcA.47.39 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 47 :LLLRFPHLI 7odcA 40 :FYVADLGDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83447 # 1uc2A.47.25 read from T0547.t06.many.frag # found chain 1uc2A in template set T0547 47 :LLLRFPHLI 1uc2A 26 :GRVYADEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83448 # 1rcqA.47.4 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 47 :LLLRFPHLI 1rcqA 5 :RALIDLQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83449 # 2af4C.47.44 read from T0547.t06.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)R50 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLL 2af4C 45 :VLV T0547 51 :FPHLI 2af4C 49 :NEADI Number of specific fragments extracted= 2 number of extra gaps= 1 total=83451 # 1lvaA.47.55 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 47 :LLLRFPHLI 1lvaA 432 :LYAISTERY Number of specific fragments extracted= 1 number of extra gaps= 0 total=83452 # 1ryoA.47.6 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 47 :LLLRFPHLI 1ryoA 7 :RWCAVSEHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83453 # 1jayA.47.28 read from T0547.t06.many.frag # found chain 1jayA in training set T0547 47 :LLLRFPHLI 1jayA 29 :VGSRREEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83454 # 1evlA.47.143 read from T0547.t06.many.frag # found chain 1evlA in training set T0547 47 :LLLRFPHLI 1evlA 385 :HIFCTEEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83455 # 1pq4A.47.132 read from T0547.t06.many.frag # found chain 1pq4A in template set T0547 47 :LLLRFPHLI 1pq4A 179 :HIWLSPTLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83456 # 1gmxA.47.23 read from T0547.t06.many.frag # found chain 1gmxA in training set T0547 47 :LLLRFPHLI 1gmxA 24 :VDIRDPQSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83457 # 1zhaA.47.10 read from T0547.t06.many.frag # found chain 1zhaA in template set T0547 47 :LLLRFPHLI 1zhaA 1011 :CAIESEELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83458 # 1mgtA.47.27 read from T0547.t06.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)L49 (1mgtA)A30 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1mgtA)F31 because G (3-10) conformation "forbidden" or filtered. T0547 47 :LL 1mgtA 28 :AF T0547 51 :FPHLI 1mgtA 32 :DRGTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=83460 # 1onrA.47.29 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 47 :LLLRFPHLI 1onrA 31 :DATTNPSLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83461 # 1fsgA.47.46 read from T0547.t06.many.frag # found chain 1fsgA in training set T0547 47 :LLLRFPHLI 1fsgA 44 :KILLPGGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83462 # 1owlA.47.33 read from T0547.t06.many.frag # found chain 1owlA in training set T0547 47 :LLLRFPHLI 1owlA 34 :LFCLDPQIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83463 # 1kgdA.47.53 read from T0547.t06.many.frag # found chain 1kgdA in training set T0547 47 :LLLRFPHLI 1kgdA 783 :YYFVSHDQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=83464 # 2ak3A.47.32 read from T0547.t06.many.frag # found chain 2ak3A in template set T0547 47 :LLLRFPHLI 2ak3A 32 :KHLSSGDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83465 # 1vhtA.47.28 read from T0547.t06.many.frag # found chain 1vhtA in training set T0547 47 :LLLRFPHLI 1vhtA 27 :INVIDADII Number of specific fragments extracted= 1 number of extra gaps= 0 total=83466 # 1bjt.47.36 read from T0547.t06.many.frag # found chain 1bjt in template set T0547 47 :LLLRFPHLI 1bjt 445 :LVLTEGDSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83467 # 1sg6A.47.39 read from T0547.t06.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)R50 (1sg6A)T43 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLL 1sg6A 40 :VLV T0547 51 :FPHLI 1sg6A 44 :DTNIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=83469 # 1uslA.47.13 read from T0547.t06.many.frag # found chain 1uslA in template set T0547 47 :LLLRFPHLI 1uslA 6 :VYLGADHAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83470 # 2b8eA.47.91 read from T0547.t06.many.frag # found chain 2b8eA in template set Warning: unaligning (T0547)L47 because of BadResidue code BAD_PEPTIDE at template residue (2b8eA)I498 Warning: unaligning (T0547)R50 (2b8eA)G501 because Y (epsilon') conformation "forbidden" or filtered. T0547 48 :LL 2b8eA 499 :LV T0547 51 :FPHLI 2b8eA 502 :NKRLM Number of specific fragments extracted= 2 number of extra gaps= 2 total=83472 # 1of8A.47.75 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 47 :LLLRFPHLI 1of8A 76 :CSIHDLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83473 # 1tif.47.56 read from T0547.t06.many.frag # found chain 1tif in training set T0547 47 :LLLRFPHLI 1tif 57 :CRIMDYGKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83474 # 1kyqA.47.16 read from T0547.t06.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)R50 (1kyqA)G20 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1kyqA)G22 because Y (epsilon') conformation "forbidden" or filtered. T0547 47 :LLL 1kyqA 17 :LLI T0547 51 :F 1kyqA 21 :G T0547 53 :HLI 1kyqA 23 :EVG Number of specific fragments extracted= 3 number of extra gaps= 2 total=83477 # 1l9vA.47.225 read from T0547.t06.many.frag # found chain 1l9vA in template set T0547 47 :LLLRFPHLI 1l9vA 226 :YRIVKYSSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83478 # 1p1xA.47.45 read from T0547.t06.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)L47 because of BadResidue code BAD_PEPTIDE in next template residue (1p1xA)I46 Warning: unaligning (T0547)L48 because of BadResidue code BAD_PEPTIDE at template residue (1p1xA)I46 Warning: unaligning (T0547)R50 (1p1xA)I48 because Y (epsilon') conformation "forbidden" or filtered. T0547 49 :L 1p1xA 47 :C T0547 51 :FPHLI 1p1xA 49 :YPRFI Number of specific fragments extracted= 2 number of extra gaps= 2 total=83480 # 1vi6A.47.43 read from T0547.t06.many.frag # found chain 1vi6A in template set T0547 47 :LLLRFPHLI 1vi6A 43 :LYVLDIRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83481 # 1lvaA.48.56 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 48 :LLRFPHLIQ 1lvaA 433 :YAISTERYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83482 # 1knwA.48.28 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 48 :LLRFPHLIQ 1knwA 29 :WVYDAQIIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83483 # 7odcA.48.40 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 48 :LLRFPHLIQ 7odcA 41 :YVADLGDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83484 # 1rcqA.48.5 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 48 :LLRFPHLIQ 1rcqA 6 :ALIDLQALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83485 # 1o4wA.48.25 read from T0547.t06.many.frag # found chain 1o4wA in template set T0547 48 :LLRFPHLIQ 1o4wA 14 :AVVDTNVLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=83486 # 1mgtA.48.28 read from T0547.t06.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)L48 (1mgtA)F29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L49 (1mgtA)A30 because Y (epsilon') conformation "forbidden" or filtered. T0547 50 :RFPHLIQ 1mgtA 31 :FDRGTLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=83487 # 1jayA.48.29 read from T0547.t06.many.frag # found chain 1jayA in training set T0547 48 :LLRFPHLIQ 1jayA 30 :GSRREEKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83488 # 2af4C.48.45 read from T0547.t06.many.frag # found chain 2af4C in template set Warning: unaligning (T0547)R50 (2af4C)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 48 :LL 2af4C 46 :LV T0547 51 :FPHLIQ 2af4C 49 :NEADIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=83490 # 1ryoA.48.7 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 48 :LLRFPHLIQ 1ryoA 8 :WCAVSEHEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83491 # 1uc2A.48.26 read from T0547.t06.many.frag # found chain 1uc2A in template set T0547 48 :LLRFPHLIQ 1uc2A 27 :RVYADEVLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83492 # 1evlA.48.144 read from T0547.t06.many.frag # found chain 1evlA in training set T0547 48 :LLRFPHLIQ 1evlA 386 :IFCTEEQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83493 # 1pq4A.48.133 read from T0547.t06.many.frag # found chain 1pq4A in template set T0547 48 :LLRFPHLIQ 1pq4A 180 :IWLSPTLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83494 # 1of8A.48.76 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 48 :LLRFPHLIQ 1of8A 77 :SIHDLEAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83495 # 1zhaA.48.11 read from T0547.t06.many.frag # found chain 1zhaA in template set T0547 48 :LLRFPHLIQ 1zhaA 1012 :AIESEELLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83496 # 1fsgA.48.47 read from T0547.t06.many.frag # found chain 1fsgA in training set T0547 48 :LLRFPHLIQ 1fsgA 45 :ILLPGGLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83497 # 1l9vA.48.226 read from T0547.t06.many.frag # found chain 1l9vA in template set T0547 48 :LLRFPHLIQ 1l9vA 227 :RIVKYSSVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83498 # 2bh4X.48.68 read from T0547.t06.many.frag # found chain 2bh4X in template set T0547 48 :LLRFPHLIQ 2bh4X 69 :MVWSEADLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83499 # 1guqA.48.119 read from T0547.t06.many.frag # found chain 1guqA in training set T0547 48 :LLRFPHLIQ 1guqA 120 :PELSVAALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=83500 # 1kgdA.48.54 read from T0547.t06.many.frag # found chain 1kgdA in training set T0547 48 :LLRFPHLIQ 1kgdA 784 :YFVSHDQMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=83501 # 1yqhA.48.49 read from T0547.t06.many.frag # found chain 1yqhA in training set Warning: unaligning (T0547)R50 (1yqhA)G49 because Y (epsilon') conformation "forbidden" or filtered. T0547 48 :LL 1yqhA 47 :LE T0547 51 :FPHLIQ 1yqhA 50 :ELDVLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=83503 # 1vi6A.48.44 read from T0547.t06.many.frag # found chain 1vi6A in template set Warning: unaligning (T0547)R50 (1vi6A)L46 because P (beta_P) conformation "forbidden" or filtered. T0547 48 :LL 1vi6A 44 :YV T0547 51 :FPHLIQ 1vi6A 47 :DIRKLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=83505 # 1ne9A.48.79 read from T0547.t06.many.frag # found chain 1ne9A in training set T0547 48 :LLRFPHLIQ 1ne9A 80 :DVTDVDLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83506 # 2aebA.48.65 read from T0547.t06.many.frag # found chain 2aebA in training set T0547 48 :LLRFPHLIQ 2aebA 66 :IVKNPRSVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83507 # 1kyqA.48.17 read from T0547.t06.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)P52 (1kyqA)G22 because Y (epsilon') conformation "forbidden" or filtered. T0547 48 :LLRF 1kyqA 18 :LIGG T0547 53 :HLIQ 1kyqA 23 :EVGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=83509 # 1eyeA.48.23 read from T0547.t06.many.frag # found chain 1eyeA in template set T0547 48 :LLRFPHLIQ 1eyeA 24 :CYLDLDDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83510 # 1onrA.48.30 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 48 :LLRFPHLIQ 1onrA 32 :ATTNPSLIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83511 # 1jx4A.48.73 read from T0547.t06.many.frag # found chain 1jx4A in training set T0547 48 :LLRFPHLIQ 1jx4A 74 :LPMRKEVYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83512 # 1vflA.48.70 read from T0547.t06.many.frag # found chain 1vflA in training set Warning: unaligning (T0547)R50 (1vflA)G71 because T (delta_L) conformation "forbidden" or filtered. T0547 48 :LL 1vflA 69 :IA T0547 51 :FPHLIQ 1vflA 72 :CRDAIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=83514 # 1fjgJ.48.8 read from T0547.t06.many.frag # found chain 1fjgJ in template set Warning: unaligning (T0547)L49 (1fjgJ)G10 because Y (epsilon') conformation "forbidden" or filtered. T0547 48 :L 1fjgJ 9 :R T0547 50 :RFPHLIQ 1fjgJ 11 :FDHKTLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=83516 # 1vhtA.48.29 read from T0547.t06.many.frag # found chain 1vhtA in training set T0547 48 :LLRFPHLIQ 1vhtA 28 :NVIDADIIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83517 # 1rcqA.49.6 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 49 :LRFPHLIQK 1rcqA 7 :LIDLQALRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=83518 # 1lvaA.49.57 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 49 :LRFPHLIQK 1lvaA 434 :AISTERYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83519 # 7odcA.49.41 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 49 :LRFPHLIQK 7odcA 42 :VADLGDILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83520 # 1mgtA.49.29 read from T0547.t06.many.frag # found chain 1mgtA in training set Warning: unaligning (T0547)R50 (1mgtA)F31 because G (3-10) conformation "forbidden" or filtered. T0547 49 :L 1mgtA 30 :A T0547 51 :FPHLIQK 1mgtA 32 :DRGTLMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=83522 # 1jayA.49.30 read from T0547.t06.many.frag # found chain 1jayA in training set T0547 49 :LRFPHLIQK 1jayA 31 :SRREEKAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83523 # 1of8A.49.77 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 49 :LRFPHLIQK 1of8A 78 :IHDLEAAQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83524 # 1zhaA.49.12 read from T0547.t06.many.frag # found chain 1zhaA in template set T0547 49 :LRFPHLIQK 1zhaA 1013 :IESEELLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83525 # 1evlA.49.145 read from T0547.t06.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)R50 (1evlA)C388 because Y (epsilon') conformation "forbidden" or filtered. T0547 49 :L 1evlA 387 :F T0547 51 :FPHLIQK 1evlA 389 :TEEQIRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=83527 # 1pq4A.49.134 read from T0547.t06.many.frag # found chain 1pq4A in template set T0547 49 :LRFPHLIQK 1pq4A 181 :WLSPTLVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83528 # 2af4C.49.46 read from T0547.t06.many.frag # found chain 2af4C in template set T0547 49 :LRFPHLIQK 2af4C 47 :VGNEADIKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83529 # 1ryoA.49.8 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P52 (1ryoA)S12 because S (epsilon) conformation "forbidden" or filtered. T0547 49 :LRF 1ryoA 9 :CAV T0547 53 :HLIQK 1ryoA 13 :EHEAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=83531 # 1o4wA.49.26 read from T0547.t06.many.frag # found chain 1o4wA in template set T0547 49 :LRFPHLIQK 1o4wA 15 :VVDTNVLMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=83532 # 1v7wA.49.279 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 49 :LRFPHLIQK 1v7wA 280 :YQDVANIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83533 # 1knwA.49.29 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 49 :LRFPHLIQK 1knwA 30 :VYDAQIIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83534 # 1fsgA.49.48 read from T0547.t06.many.frag # found chain 1fsgA in training set T0547 49 :LRFPHLIQK 1fsgA 46 :LLPGGLVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83535 # 1ne9A.49.80 read from T0547.t06.many.frag # found chain 1ne9A in training set T0547 49 :LRFPHLIQK 1ne9A 81 :VTDVDLLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83536 # 2aebA.49.66 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)F51 (2aebA)N69 because L (left) conformation "forbidden" or filtered. T0547 49 :LR 2aebA 67 :VK T0547 52 :PHLIQK 2aebA 70 :PRSVGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=83538 # 1ls1A.49.20 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 49 :LRFPHLIQK 1ls1A 21 :RITEEDLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83539 # 1bykA.49.40 read from T0547.t06.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)L49 (1bykA)Q101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R50 (1bykA)F102 because L (left) conformation "forbidden" or filtered. T0547 51 :FPHLIQK 1bykA 103 :SPQLVAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=83540 # 1qv9A.49.42 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 49 :LRFPHLIQK 1qv9A 43 :KMDPECVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83541 # 1uc2A.49.27 read from T0547.t06.many.frag # found chain 1uc2A in template set T0547 49 :LRFPHLIQK 1uc2A 28 :VYADEVLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83542 # 2bh4X.49.69 read from T0547.t06.many.frag # found chain 2bh4X in template set T0547 49 :LRFPHLIQK 2bh4X 70 :VWSEADLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83543 # 1eyeA.49.24 read from T0547.t06.many.frag # found chain 1eyeA in template set T0547 49 :LRFPHLIQK 1eyeA 25 :YLDLDDAVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83544 # 1kgdA.49.55 read from T0547.t06.many.frag # found chain 1kgdA in training set T0547 49 :LRFPHLIQK 1kgdA 785 :FVSHDQMMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83545 # 1vflA.49.71 read from T0547.t06.many.frag # found chain 1vflA in training set Warning: unaligning (T0547)R50 (1vflA)G71 because T (delta_L) conformation "forbidden" or filtered. T0547 49 :L 1vflA 70 :A T0547 51 :FPHLIQK 1vflA 72 :CRDAIKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=83547 # 1guqA.49.120 read from T0547.t06.many.frag # found chain 1guqA in training set T0547 49 :LRFPHLIQK 1guqA 121 :ELSVAALTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83548 # 1l9vA.49.227 read from T0547.t06.many.frag # found chain 1l9vA in template set T0547 49 :LRFPHLIQK 1l9vA 228 :IVKYSSVAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=83549 # 1vi6A.49.45 read from T0547.t06.many.frag # found chain 1vi6A in template set T0547 49 :LRFPHLIQK 1vi6A 45 :VLDIRKLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83550 # 1fobA.49.55 read from T0547.t06.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)R50 (1fobA)Y57 because L (left) conformation "forbidden" or filtered. T0547 49 :L 1fobA 56 :S T0547 51 :FPHLIQK 1fobA 58 :DLDYNLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=83552 # 1jakA.49.50 read from T0547.t06.many.frag # found chain 1jakA in training set Warning: unaligning (T0547)R50 (1jakA)D46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P52 (1jakA)S48 because E (beta_S) conformation "forbidden" or filtered. T0547 49 :L 1jakA 45 :V T0547 51 :F 1jakA 47 :D T0547 53 :HLIQK 1jakA 49 :REARR Number of specific fragments extracted= 3 number of extra gaps= 2 total=83555 # 7odcA.50.42 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 50 :RFPHLIQKQ 7odcA 43 :ADLGDILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83556 # 1rcqA.50.7 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 50 :RFPHLIQKQ 1rcqA 8 :IDLQALRHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=83557 # 1jayA.50.31 read from T0547.t06.many.frag # found chain 1jayA in training set T0547 50 :RFPHLIQKQ 1jayA 32 :RREEKAEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83558 # 1mgtA.50.30 read from T0547.t06.many.frag # found chain 1mgtA in training set T0547 50 :RFPHLIQKQ 1mgtA 31 :FDRGTLMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83559 # 1qv9A.50.43 read from T0547.t06.many.frag # found chain 1qv9A in training set Warning: unaligning (T0547)R50 (1qv9A)M44 because G (3-10) conformation "forbidden" or filtered. T0547 51 :FPHLIQKQ 1qv9A 45 :DPECVEAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=83560 # 1evlA.50.146 read from T0547.t06.many.frag # found chain 1evlA in training set T0547 50 :RFPHLIQKQ 1evlA 388 :CTEEQIRDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83561 # 1fsgA.50.49 read from T0547.t06.many.frag # found chain 1fsgA in training set T0547 50 :RFPHLIQKQ 1fsgA 47 :LPGGLVKDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83562 # 1bykA.50.41 read from T0547.t06.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)R50 (1bykA)F102 because L (left) conformation "forbidden" or filtered. T0547 51 :FPHLIQKQ 1bykA 103 :SPQLVAEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=83563 # 1ls1A.50.21 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 50 :RFPHLIQKQ 1ls1A 22 :ITEEDLKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=83564 # 1tf5A.50.38 read from T0547.t06.many.frag # found chain 1tf5A in template set T0547 50 :RFPHLIQKQ 1tf5A 36 :LSDDALKHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83565 # 1of8A.50.78 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 50 :RFPHLIQKQ 1of8A 79 :HDLEAAQEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=83566 # 1wdpA.50.29 read from T0547.t06.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)R50 because of BadResidue code BAD_PEPTIDE at template residue (1wdpA)E30 T0547 51 :FPHLIQKQ 1wdpA 31 :DPDGLKEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=83567 # 1lvaA.50.58 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 50 :RFPHLIQKQ 1lvaA 435 :ISTERYQAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=83568 # 1ra0A.50.98 read from T0547.t06.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)R50 (1ra0A)L95 because P (beta_P) conformation "forbidden" or filtered. T0547 51 :FPHLIQKQ 1ra0A 96 :THDDVKQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=83569 # 1sflA.50.43 read from T0547.t06.many.frag # found chain 1sflA in template set T0547 50 :RFPHLIQKQ 1sflA 44 :VTVDQVAEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=83570 # 1v7wA.50.280 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 50 :RFPHLIQKQ 1v7wA 281 :QDVANIDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83571 # 1zhaA.50.13 read from T0547.t06.many.frag # found chain 1zhaA in template set Warning: unaligning (T0547)F51 (1zhaA)S1015 because Y (epsilon') conformation "forbidden" or filtered. T0547 50 :R 1zhaA 1014 :E T0547 52 :PHLIQKQ 1zhaA 1016 :EELLLKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=83573 # 1ne9A.50.81 read from T0547.t06.many.frag # found chain 1ne9A in training set T0547 50 :RFPHLIQKQ 1ne9A 82 :TDVDLLDRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83574 # 1vflA.50.72 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 50 :RFPHLIQKQ 1vflA 71 :GCRDAIKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83575 # 2d0tA.50.193 read from T0547.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0547)R50 (2d0tA)Q191 because L (left) conformation "forbidden" or filtered. T0547 51 :FPHLIQKQ 2d0tA 192 :ERDTLLKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=83576 # 1guqA.50.121 read from T0547.t06.many.frag # found chain 1guqA in training set T0547 50 :RFPHLIQKQ 1guqA 122 :LSVAALTEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83577 # 1knwA.50.30 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 50 :RFPHLIQKQ 1knwA 31 :YDAQIIRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83578 # 1ryoA.50.9 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 50 :RFPHLIQKQ 1ryoA 10 :AVSEHEATK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83579 # 1vi6A.50.46 read from T0547.t06.many.frag # found chain 1vi6A in template set Warning: unaligning (T0547)R50 (1vi6A)L46 because P (beta_P) conformation "forbidden" or filtered. T0547 51 :FPHLIQKQ 1vi6A 47 :DIRKLDER Number of specific fragments extracted= 1 number of extra gaps= 1 total=83580 # 1eyeA.50.25 read from T0547.t06.many.frag # found chain 1eyeA in template set T0547 50 :RFPHLIQKQ 1eyeA 26 :LDLDDAVKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=83581 # 1jbwA.50.89 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 50 :RFPHLIQKQ 1jbwA 90 :IPDAALVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83582 # 1uc2A.50.28 read from T0547.t06.many.frag # found chain 1uc2A in template set T0547 50 :RFPHLIQKQ 1uc2A 29 :YADEVLLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83583 # 1oe4A.50.2 read from T0547.t06.many.frag # found chain 1oe4A in template set T0547 50 :RFPHLIQKQ 1oe4A 37 :SPADSFLKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83584 # 2aebA.50.67 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)F51 (2aebA)N69 because L (left) conformation "forbidden" or filtered. T0547 50 :R 2aebA 68 :K T0547 52 :PHLIQKQ 2aebA 70 :PRSVGKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=83586 # 1h80A.50.36 read from T0547.t06.many.frag # found chain 1h80A in training set T0547 50 :RFPHLIQKQ 1h80A 64 :DDSNALQRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83587 # 7odcA.51.43 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 51 :FPHLIQKQI 7odcA 44 :DLGDILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=83588 # 1jayA.51.32 read from T0547.t06.many.frag # found chain 1jayA in training set T0547 51 :FPHLIQKQI 1jayA 33 :REEKAEAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83589 # 1rcqA.51.8 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 51 :FPHLIQKQI 1rcqA 9 :DLQALRHNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=83590 # 1mgtA.51.31 read from T0547.t06.many.frag # found chain 1mgtA in training set T0547 51 :FPHLIQKQI 1mgtA 32 :DRGTLMKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83591 # 1qv9A.51.44 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 51 :FPHLIQKQI 1qv9A 45 :DPECVEAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83592 # 1wdpA.51.30 read from T0547.t06.many.frag # found chain 1wdpA in training set T0547 51 :FPHLIQKQI 1wdpA 31 :DPDGLKEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83593 # 2d0tA.51.194 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 51 :FPHLIQKQI 2d0tA 192 :ERDTLLKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83594 # 1evlA.51.147 read from T0547.t06.many.frag # found chain 1evlA in training set T0547 51 :FPHLIQKQI 1evlA 389 :TEEQIRDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83595 # 1bykA.51.42 read from T0547.t06.many.frag # found chain 1bykA in template set T0547 51 :FPHLIQKQI 1bykA 103 :SPQLVAEHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83596 # 1fsgA.51.50 read from T0547.t06.many.frag # found chain 1fsgA in training set T0547 51 :FPHLIQKQI 1fsgA 48 :PGGLVKDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83597 # 1tf5A.51.39 read from T0547.t06.many.frag # found chain 1tf5A in template set T0547 51 :FPHLIQKQI 1tf5A 37 :SDDALKHKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=83598 # 1of8A.51.79 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 51 :FPHLIQKQI 1of8A 80 :DLEAAQEYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83599 # 1v7wA.51.281 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 51 :FPHLIQKQI 1v7wA 282 :DVANIDAAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83600 # 1zhaA.51.14 read from T0547.t06.many.frag # found chain 1zhaA in template set T0547 51 :FPHLIQKQI 1zhaA 1015 :SEELLLKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83601 # 1vflA.51.73 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 51 :FPHLIQKQI 1vflA 72 :CRDAIKRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83602 # 1ra0A.51.99 read from T0547.t06.many.frag # found chain 1ra0A in training set T0547 51 :FPHLIQKQI 1ra0A 96 :THDDVKQRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83603 # 1ne9A.51.82 read from T0547.t06.many.frag # found chain 1ne9A in training set T0547 51 :FPHLIQKQI 1ne9A 83 :DVDLLDRLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83604 # 1sflA.51.44 read from T0547.t06.many.frag # found chain 1sflA in template set T0547 51 :FPHLIQKQI 1sflA 45 :TVDQVAEMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83605 # 1ls1A.51.22 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 51 :FPHLIQKQI 1ls1A 23 :TEEDLKATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83606 # 1h70A.51.27 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 51 :FPHLIQKQI 1h70A 27 :DYAKALEQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=83607 # 1zuwA.51.45 read from T0547.t06.many.frag # found chain 1zuwA in training set T0547 51 :FPHLIQKQI 1zuwA 46 :PEEEVLQYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=83608 # 1jbwA.51.90 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 51 :FPHLIQKQI 1jbwA 91 :PDAALVNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83609 # 1guqA.51.122 read from T0547.t06.many.frag # found chain 1guqA in training set T0547 51 :FPHLIQKQI 1guqA 123 :SVAALTEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83610 # 1lvaA.51.59 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 51 :FPHLIQKQI 1lvaA 436 :STERYQAWW Number of specific fragments extracted= 1 number of extra gaps= 0 total=83611 # 1o12A.51.97 read from T0547.t06.many.frag # found chain 1o12A in template set T0547 51 :FPHLIQKQI 1o12A 86 :SLEKMKEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83612 # 1nogA.51.46 read from T0547.t06.many.frag # found chain 1nogA in training set Warning: unaligning (T0547)P52 (1nogA)W48 because E (beta_S) conformation "forbidden" or filtered. T0547 51 :F 1nogA 47 :R T0547 53 :HLIQKQI 1nogA 49 :DDIRNDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=83614 # 1eyeA.51.26 read from T0547.t06.many.frag # found chain 1eyeA in template set T0547 51 :FPHLIQKQI 1eyeA 27 :DLDDAVKHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83615 # 1yacA.51.31 read from T0547.t06.many.frag # found chain 1yacA in training set T0547 51 :FPHLIQKQI 1yacA 32 :EPDKFKNNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83616 # 1ryoA.51.10 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P52 (1ryoA)S12 because S (epsilon) conformation "forbidden" or filtered. T0547 51 :F 1ryoA 11 :V T0547 53 :HLIQKQI 1ryoA 13 :EHEATKC Number of specific fragments extracted= 2 number of extra gaps= 1 total=83618 # 1u0fA.51.117 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 51 :FPHLIQKQI 1u0fA 117 :VMPEVNRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83619 # 1jayA.52.33 read from T0547.t06.many.frag # found chain 1jayA in training set T0547 52 :PHLIQKQIE 1jayA 34 :EEKAEAKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83620 # 7odcA.52.44 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 52 :PHLIQKQIE 7odcA 45 :LGDILKKHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83621 # 1tf5A.52.40 read from T0547.t06.many.frag # found chain 1tf5A in template set T0547 52 :PHLIQKQIE 1tf5A 38 :DDALKHKTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83622 # 1rcqA.52.9 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 52 :PHLIQKQIE 1rcqA 10 :LQALRHNYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83623 # 1qv9A.52.45 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 52 :PHLIQKQIE 1qv9A 46 :PECVEAAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83624 # 1h70A.52.28 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 52 :PHLIQKQIE 1h70A 28 :YAKALEQHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=83625 # 2d0tA.52.195 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 52 :PHLIQKQIE 2d0tA 193 :RDTLLKALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83626 # 1mgtA.52.32 read from T0547.t06.many.frag # found chain 1mgtA in training set T0547 52 :PHLIQKQIE 1mgtA 33 :RGTLMKRIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=83627 # 1jbwA.52.91 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 52 :PHLIQKQIE 1jbwA 92 :DAALVNAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83628 # 1wdpA.52.31 read from T0547.t06.many.frag # found chain 1wdpA in training set T0547 52 :PHLIQKQIE 1wdpA 32 :PDGLKEQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83629 # 1of8A.52.80 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 52 :PHLIQKQIE 1of8A 81 :LEAAQEYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83630 # 1fsgA.52.51 read from T0547.t06.many.frag # found chain 1fsgA in training set T0547 52 :PHLIQKQIE 1fsgA 49 :GGLVKDRVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83631 # 1v7wA.52.282 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 52 :PHLIQKQIE 1v7wA 283 :VANIDAAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83632 # 1evlA.52.148 read from T0547.t06.many.frag # found chain 1evlA in training set T0547 52 :PHLIQKQIE 1evlA 390 :EEQIRDEVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=83633 # 1bykA.52.43 read from T0547.t06.many.frag # found chain 1bykA in template set T0547 52 :PHLIQKQIE 1bykA 104 :PQLVAEHLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83634 # 1s9rA.52.50 read from T0547.t06.many.frag # found chain 1s9rA in training set Warning: unaligning (T0547)H53 (1s9rA)H52 because H (helix) conformation "forbidden" or filtered. T0547 52 :P 1s9rA 51 :S T0547 54 :LIQKQIE 1s9rA 53 :DARKEHK Number of specific fragments extracted= 2 number of extra gaps= 1 total=83636 # 1zuwA.52.46 read from T0547.t06.many.frag # found chain 1zuwA in training set T0547 52 :PHLIQKQIE 1zuwA 47 :EEEVLQYTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=83637 # 1j2rA.52.40 read from T0547.t06.many.frag # found chain 1j2rA in training set T0547 52 :PHLIQKQIE 1j2rA 41 :ADEVVNRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83638 # 1u0fA.52.118 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 52 :PHLIQKQIE 1u0fA 118 :MPEVNRVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83639 # 1ls1A.52.23 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 52 :PHLIQKQIE 1ls1A 24 :EEDLKATLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83640 # 1zhaA.52.15 read from T0547.t06.many.frag # found chain 1zhaA in template set T0547 52 :PHLIQKQIE 1zhaA 1016 :EELLLKVGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83641 # 1sflA.52.45 read from T0547.t06.many.frag # found chain 1sflA in template set T0547 52 :PHLIQKQIE 1sflA 46 :VDQVAEMIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=83642 # 1vi6A.52.48 read from T0547.t06.many.frag # found chain 1vi6A in template set T0547 52 :PHLIQKQIE 1vi6A 48 :IRKLDERIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83643 # 1ra0A.52.100 read from T0547.t06.many.frag # found chain 1ra0A in training set T0547 52 :PHLIQKQIE 1ra0A 97 :HDDVKQRAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=83644 # 1ne9A.52.83 read from T0547.t06.many.frag # found chain 1ne9A in training set T0547 52 :PHLIQKQIE 1ne9A 84 :VDLLDRLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83645 # 1vflA.52.74 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 52 :PHLIQKQIE 1vflA 73 :RDAIKRIAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=83646 # 1guqA.52.123 read from T0547.t06.many.frag # found chain 1guqA in training set T0547 52 :PHLIQKQIE 1guqA 124 :VAALTEIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83647 # 1yacA.52.32 read from T0547.t06.many.frag # found chain 1yacA in training set T0547 52 :PHLIQKQIE 1yacA 33 :PDKFKNNVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83648 # 1ryoA.52.11 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P52 (1ryoA)S12 because S (epsilon) conformation "forbidden" or filtered. T0547 53 :HLIQKQIE 1ryoA 13 :EHEATKCQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=83649 # 1wo8A.52.12 read from T0547.t06.many.frag # found chain 1wo8A in training set T0547 52 :PHLIQKQIE 1wo8A 13 :KDEMVAFCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83650 # 1jayA.53.34 read from T0547.t06.many.frag # found chain 1jayA in training set T0547 53 :HLIQKQIEN 1jayA 35 :EKAEAKAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83651 # 7odcA.53.45 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 53 :HLIQKQIEN 7odcA 46 :GDILKKHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83652 # 1tf5A.53.41 read from T0547.t06.many.frag # found chain 1tf5A in template set T0547 53 :HLIQKQIEN 1tf5A 39 :DALKHKTIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83653 # 1h70A.53.29 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 53 :HLIQKQIEN 1h70A 29 :AKALEQHNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83654 # 1rcqA.53.10 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 53 :HLIQKQIEN 1rcqA 11 :QALRHNYRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83655 # 1mgtA.53.33 read from T0547.t06.many.frag # found chain 1mgtA in training set T0547 53 :HLIQKQIEN 1mgtA 34 :GTLMKRIHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83656 # 1qv9A.53.46 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 53 :HLIQKQIEN 1qv9A 47 :ECVEAAVEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=83657 # 2d0tA.53.196 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 53 :HLIQKQIEN 2d0tA 194 :DTLLKALLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83658 # 1jbwA.53.92 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 53 :HLIQKQIEN 1jbwA 93 :AALVNAVAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83659 # 1wdpA.53.32 read from T0547.t06.many.frag # found chain 1wdpA in training set T0547 53 :HLIQKQIEN 1wdpA 33 :DGLKEQLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83660 # 1v7wA.53.283 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 53 :HLIQKQIEN 1v7wA 284 :ANIDAAFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83661 # 1bykA.53.44 read from T0547.t06.many.frag # found chain 1bykA in template set T0547 53 :HLIQKQIEN 1bykA 105 :QLVAEHLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83662 # 1fsgA.53.52 read from T0547.t06.many.frag # found chain 1fsgA in training set T0547 53 :HLIQKQIEN 1fsgA 50 :GLVKDRVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83663 # 1j2rA.53.41 read from T0547.t06.many.frag # found chain 1j2rA in training set T0547 53 :HLIQKQIEN 1j2rA 42 :DEVVNRAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83664 # 1ra0A.53.101 read from T0547.t06.many.frag # found chain 1ra0A in training set T0547 53 :HLIQKQIEN 1ra0A 98 :DDVKQRAWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83665 # 1zuwA.53.47 read from T0547.t06.many.frag # found chain 1zuwA in training set T0547 53 :HLIQKQIEN 1zuwA 48 :EEVLQYTWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83666 # 1ls1A.53.24 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 53 :HLIQKQIEN 1ls1A 25 :EDLKATLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83667 # 1of8A.53.81 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 53 :HLIQKQIEN 1of8A 82 :EAAQEYALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83668 # 1u0fA.53.119 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 53 :HLIQKQIEN 1u0fA 119 :PEVNRVLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83669 # 1sflA.53.46 read from T0547.t06.many.frag # found chain 1sflA in template set T0547 53 :HLIQKQIEN 1sflA 47 :DQVAEMITK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83670 # 1s9rA.53.51 read from T0547.t06.many.frag # found chain 1s9rA in training set T0547 53 :HLIQKQIEN 1s9rA 52 :HDARKEHKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83671 # 1ryoA.53.12 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 53 :HLIQKQIEN 1ryoA 13 :EHEATKCQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=83672 # 1wo8A.53.13 read from T0547.t06.many.frag # found chain 1wo8A in training set T0547 53 :HLIQKQIEN 1wo8A 14 :DEMVAFCLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83673 # 1zhaA.53.16 read from T0547.t06.many.frag # found chain 1zhaA in template set T0547 53 :HLIQKQIEN 1zhaA 1017 :ELLLKVGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83674 # 2etdA.53.24 read from T0547.t06.many.frag # found chain 2etdA in template set T0547 53 :HLIQKQIEN 2etdA 47 :SQIQNQLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83675 # 1evlA.53.149 read from T0547.t06.many.frag # found chain 1evlA in training set T0547 53 :HLIQKQIEN 1evlA 391 :EQIRDEVNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83676 # 1ne9A.53.84 read from T0547.t06.many.frag # found chain 1ne9A in training set T0547 53 :HLIQKQIEN 1ne9A 85 :DLLDRLVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83677 # 1lvaA.53.61 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 53 :HLIQKQIEN 1lvaA 438 :ERYQAWWQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83678 # 1yacA.53.33 read from T0547.t06.many.frag # found chain 1yacA in training set T0547 53 :HLIQKQIEN 1yacA 34 :DKFKNNVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83679 # 1vflA.53.75 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 53 :HLIQKQIEN 1vflA 74 :DAIKRIAYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83680 # 1jayA.54.35 read from T0547.t06.many.frag # found chain 1jayA in training set T0547 54 :LIQKQIENI 1jayA 36 :KAEAKAAEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=83681 # 7odcA.54.46 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 54 :LIQKQIENI 7odcA 47 :DILKKHLRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=83682 # 1tf5A.54.42 read from T0547.t06.many.frag # found chain 1tf5A in template set T0547 54 :LIQKQIENI 1tf5A 40 :ALKHKTIEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83683 # 1h70A.54.30 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 54 :LIQKQIENI 1h70A 30 :KALEQHNAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=83684 # 1rcqA.54.11 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 54 :LIQKQIENI 1rcqA 12 :ALRHNYRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83685 # 1mgtA.54.34 read from T0547.t06.many.frag # found chain 1mgtA in training set T0547 54 :LIQKQIENI 1mgtA 35 :TLMKRIHDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83686 # 1qv9A.54.47 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 54 :LIQKQIENI 1qv9A 48 :CVEAAVEMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83687 # 2d0tA.54.197 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 54 :LIQKQIENI 2d0tA 195 :TLLKALLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83688 # 1s9rA.54.52 read from T0547.t06.many.frag # found chain 1s9rA in training set T0547 54 :LIQKQIENI 1s9rA 53 :DARKEHKQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83689 # 1bykA.54.45 read from T0547.t06.many.frag # found chain 1bykA in template set T0547 54 :LIQKQIENI 1bykA 106 :LVAEHLGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83690 # 1j2rA.54.42 read from T0547.t06.many.frag # found chain 1j2rA in training set T0547 54 :LIQKQIENI 1j2rA 43 :EVVNRAGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83691 # 1wdpA.54.33 read from T0547.t06.many.frag # found chain 1wdpA in training set T0547 54 :LIQKQIENI 1wdpA 34 :GLKEQLLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83692 # 1v7wA.54.284 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 54 :LIQKQIENI 1v7wA 285 :NIDAAFAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83693 # 1jbwA.54.93 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 54 :LIQKQIENI 1jbwA 94 :ALVNAVAFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83694 # 1ra0A.54.102 read from T0547.t06.many.frag # found chain 1ra0A in training set T0547 54 :LIQKQIENI 1ra0A 99 :DVKQRAWQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=83695 # 1sflA.54.47 read from T0547.t06.many.frag # found chain 1sflA in template set T0547 54 :LIQKQIENI 1sflA 48 :QVAEMITKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83696 # 1of8A.54.82 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 54 :LIQKQIENI 1of8A 83 :AAQEYALRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83697 # 1ryoA.54.13 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 54 :LIQKQIENI 1ryoA 14 :HEATKCQSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83698 # 1u0fA.54.120 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 54 :LIQKQIENI 1u0fA 120 :EVNRVLDKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=83699 # 1fsgA.54.53 read from T0547.t06.many.frag # found chain 1fsgA in training set T0547 54 :LIQKQIENI 1fsgA 51 :LVKDRVEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83700 # 1zuwA.54.48 read from T0547.t06.many.frag # found chain 1zuwA in training set T0547 54 :LIQKQIENI 1zuwA 49 :EVLQYTWEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83701 # 1h16A.54.48 read from T0547.t06.many.frag # found chain 1h16A in training set T0547 54 :LIQKQIENI 1h16A 49 :ATTTLWDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83702 # 1ls1A.54.25 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 54 :LIQKQIENI 1ls1A 26 :DLKATLREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83703 # 1oe4A.54.6 read from T0547.t06.many.frag # found chain 1oe4A in template set T0547 54 :LIQKQIENI 1oe4A 41 :SFLKVELEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83704 # 1eyeA.54.29 read from T0547.t06.many.frag # found chain 1eyeA in template set T0547 54 :LIQKQIENI 1eyeA 30 :DAVKHGLAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=83705 # 1h6gA.54.38 read from T0547.t06.many.frag # found chain 1h6gA in template set T0547 54 :LIQKQIENI 1h6gA 415 :EVKEYAQVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83706 # 1r5iD.54.49 read from T0547.t06.many.frag # found chain 1r5iD in template set T0547 54 :LIQKQIENI 1r5iD 47 :LFKLKVNQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83707 # 1o20A.54.54 read from T0547.t06.many.frag # found chain 1o20A in template set T0547 54 :LIQKQIENI 1o20A 43 :EILEANRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=83708 # 1lki.54.24 read from T0547.t06.many.frag # found chain 1lki in template set T0547 54 :LIQKQIENI 1lki 25 :QIKNQLAQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83709 # 1y0kA.54.8 read from T0547.t06.many.frag # found chain 1y0kA in training set T0547 54 :LIQKQIENI 1y0kA 9 :LLTRQAEQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83710 # 1jayA.55.36 read from T0547.t06.many.frag # found chain 1jayA in training set T0547 55 :IQKQIENIY 1jayA 37 :AEAKAAEYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83711 # 7odcA.55.47 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 55 :IQKQIENIY 7odcA 48 :ILKKHLRWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83712 # 1h70A.55.31 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 55 :IQKQIENIY 1h70A 31 :ALEQHNAYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83713 # 1mgtA.55.35 read from T0547.t06.many.frag # found chain 1mgtA in training set T0547 55 :IQKQIENIY 1mgtA 36 :LMKRIHDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83714 # 1qv9A.55.48 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 55 :IQKQIENIY 1qv9A 49 :VEAAVEMAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83715 # 2d0tA.55.198 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 55 :IQKQIENIY 2d0tA 196 :LLKALLEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83716 # 1rcqA.55.12 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 55 :IQKQIENIY 1rcqA 13 :LRHNYRLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83717 # 1tf5A.55.43 read from T0547.t06.many.frag # found chain 1tf5A in template set T0547 55 :IQKQIENIY 1tf5A 41 :LKHKTIEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83718 # 1s9rA.55.53 read from T0547.t06.many.frag # found chain 1s9rA in training set T0547 55 :IQKQIENIY 1s9rA 54 :ARKEHKQFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83719 # 1jbwA.55.94 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 55 :IQKQIENIY 1jbwA 95 :LVNAVAFVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83720 # 1h6gA.55.39 read from T0547.t06.many.frag # found chain 1h6gA in template set T0547 55 :IQKQIENIY 1h6gA 416 :VKEYAQVFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83721 # 1j2rA.55.43 read from T0547.t06.many.frag # found chain 1j2rA in training set T0547 55 :IQKQIENIY 1j2rA 44 :VVNRAGKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83722 # 1u0fA.55.121 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 55 :IQKQIENIY 1u0fA 121 :VNRVLDKMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83723 # 1wdpA.55.34 read from T0547.t06.many.frag # found chain 1wdpA in training set T0547 55 :IQKQIENIY 1wdpA 35 :LKEQLLQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83724 # 1bykA.55.46 read from T0547.t06.many.frag # found chain 1bykA in template set T0547 55 :IQKQIENIY 1bykA 107 :VAEHLGVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83725 # 1v7wA.55.285 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 55 :IQKQIENIY 1v7wA 286 :IDAAFAAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83726 # 1ryoA.55.14 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 55 :IQKQIENIY 1ryoA 15 :EATKCQSFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83727 # 1of8A.55.83 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 55 :IQKQIENIY 1of8A 84 :AQEYALRLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83728 # 1ra0A.55.103 read from T0547.t06.many.frag # found chain 1ra0A in training set T0547 55 :IQKQIENIY 1ra0A 100 :VKQRAWQTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83729 # 1sflA.55.48 read from T0547.t06.many.frag # found chain 1sflA in template set Warning: unaligning (T0547)Y63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1sflA)D61 T0547 55 :IQKQIENI 1sflA 49 :VAEMITKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83730 # 1fsgA.55.54 read from T0547.t06.many.frag # found chain 1fsgA in training set T0547 55 :IQKQIENIY 1fsgA 52 :VKDRVEKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83731 # 1h16A.55.49 read from T0547.t06.many.frag # found chain 1h16A in training set T0547 55 :IQKQIENIY 1h16A 50 :TTTLWDKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=83732 # 1zuwA.55.49 read from T0547.t06.many.frag # found chain 1zuwA in training set T0547 55 :IQKQIENIY 1zuwA 50 :VLQYTWELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=83733 # 1ls1A.55.26 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 55 :IQKQIENIY 1ls1A 27 :LKATLREIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83734 # 1r5iD.55.50 read from T0547.t06.many.frag # found chain 1r5iD in template set T0547 55 :IQKQIENIY 1r5iD 48 :FKLKVNQFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=83735 # 1t92A.55.11 read from T0547.t06.many.frag # found chain 1t92A in training set T0547 55 :IQKQIENIY 1t92A 36 :VVSDLVALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83736 # 1y0kA.55.9 read from T0547.t06.many.frag # found chain 1y0kA in training set T0547 55 :IQKQIENIY 1y0kA 10 :LTRQAEQAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=83737 # 1lki.55.25 read from T0547.t06.many.frag # found chain 1lki in template set T0547 55 :IQKQIENIY 1lki 26 :IKNQLAQLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=83738 # 1upkA.55.42 read from T0547.t06.many.frag # found chain 1upkA in template set T0547 55 :IQKQIENIY 1upkA 43 :VSKNLVAMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83739 # 2etdA.55.26 read from T0547.t06.many.frag # found chain 2etdA in template set T0547 55 :IQKQIENIY 2etdA 49 :IQNQLQRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83740 # 1jayA.56.37 read from T0547.t06.many.frag # found chain 1jayA in training set T0547 56 :QKQIENIYG 1jayA 38 :EAKAAEYRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83741 # 7odcA.56.48 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 56 :QKQIENIYG 7odcA 49 :LKKHLRWLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83742 # 1h70A.56.32 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 56 :QKQIENIYG 1h70A 32 :LEQHNAYIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83743 # 2d0tA.56.199 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 56 :QKQIENIYG 2d0tA 197 :LKALLEIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=83744 # 1qv9A.56.49 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 56 :QKQIENIYG 1qv9A 50 :EAAVEMALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83745 # 1rcqA.56.13 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 56 :QKQIENIYG 1rcqA 14 :RHNYRLARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83746 # 1tf5A.56.44 read from T0547.t06.many.frag # found chain 1tf5A in template set T0547 56 :QKQIENIYG 1tf5A 42 :KHKTIEFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83747 # 1mgtA.56.36 read from T0547.t06.many.frag # found chain 1mgtA in training set T0547 56 :QKQIENIYG 1mgtA 37 :MKRIHDLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83748 # 1j2rA.56.44 read from T0547.t06.many.frag # found chain 1j2rA in training set T0547 56 :QKQIENIYG 1j2rA 45 :VNRAGKLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83749 # 1u0fA.56.122 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 56 :QKQIENIYG 1u0fA 122 :NRVLDKMKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=83750 # 1h6gA.56.40 read from T0547.t06.many.frag # found chain 1h6gA in template set T0547 56 :QKQIENIYG 1h6gA 417 :KEYAQVFRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83751 # 1v7wA.56.286 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 56 :QKQIENIYG 1v7wA 287 :DAAFAAIKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83752 # 1ryoA.56.15 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 56 :QKQIENIYG 1ryoA 16 :ATKCQSFRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83753 # 1s9rA.56.54 read from T0547.t06.many.frag # found chain 1s9rA in training set T0547 56 :QKQIENIYG 1s9rA 55 :RKEHKQFVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83754 # 1of8A.56.84 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 56 :QKQIENIYG 1of8A 85 :QEYALRLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83755 # 1sflA.56.49 read from T0547.t06.many.frag # found chain 1sflA in template set Warning: unaligning (T0547)Y63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1sflA)D61 T0547 56 :QKQIENI 1sflA 50 :AEMITKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83756 # 1bykA.56.47 read from T0547.t06.many.frag # found chain 1bykA in template set T0547 56 :QKQIENIYG 1bykA 108 :AEHLGVLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83757 # 1jbwA.56.95 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 56 :QKQIENIYG 1jbwA 96 :VNAVAFVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83758 # 1wdpA.56.35 read from T0547.t06.many.frag # found chain 1wdpA in training set T0547 56 :QKQIENIYG 1wdpA 36 :KEQLLQLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83759 # 1t92A.56.12 read from T0547.t06.many.frag # found chain 1t92A in training set T0547 56 :QKQIENIYG 1t92A 37 :VSDLVALEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83760 # 1ra0A.56.104 read from T0547.t06.many.frag # found chain 1ra0A in training set T0547 56 :QKQIENIYG 1ra0A 101 :KQRAWQTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83761 # 1upkA.56.43 read from T0547.t06.many.frag # found chain 1upkA in template set T0547 56 :QKQIENIYG 1upkA 44 :SKNLVAMKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83762 # 1uslA.56.22 read from T0547.t06.many.frag # found chain 1uslA in template set T0547 56 :QKQIENIYG 1uslA 15 :YELKQRIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83763 # 1h16A.56.50 read from T0547.t06.many.frag # found chain 1h16A in training set T0547 56 :QKQIENIYG 1h16A 51 :TTLWDKVME Number of specific fragments extracted= 1 number of extra gaps= 0 total=83764 # 1zuwA.56.50 read from T0547.t06.many.frag # found chain 1zuwA in training set T0547 56 :QKQIENIYG 1zuwA 51 :LQYTWELTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=83765 # 1fsgA.56.55 read from T0547.t06.many.frag # found chain 1fsgA in training set T0547 56 :QKQIENIYG 1fsgA 53 :KDRVEKLAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=83766 # 1r5iD.56.51 read from T0547.t06.many.frag # found chain 1r5iD in template set T0547 56 :QKQIENIYG 1r5iD 49 :KLKVNQFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83767 # 1ct5A.56.14 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 56 :QKQIENIYG 1ct5A 16 :IAQYESVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83768 # 1ls1A.56.27 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 56 :QKQIENIYG 1ls1A 28 :KATLREIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83769 # 1o9rA.56.51 read from T0547.t06.many.frag # found chain 1o9rA in training set T0547 56 :QKQIENIYG 1o9rA 52 :HELLDTFRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=83770 # 7odcA.57.49 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 57 :KQIENIYGN 7odcA 50 :KKHLRWLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83771 # 1jayA.57.38 read from T0547.t06.many.frag # found chain 1jayA in training set T0547 57 :KQIENIYGN 1jayA 39 :AKAAEYRRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83772 # 1h70A.57.33 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 57 :KQIENIYGN 1h70A 33 :EQHNAYIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83773 # 2d0tA.57.200 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 57 :KQIENIYGN 2d0tA 198 :KALLEIASC Number of specific fragments extracted= 1 number of extra gaps= 0 total=83774 # 1qv9A.57.50 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 57 :KQIENIYGN 1qv9A 51 :AAVEMALDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83775 # 1tf5A.57.45 read from T0547.t06.many.frag # found chain 1tf5A in template set T0547 57 :KQIENIYGN 1tf5A 43 :HKTIEFKER Number of specific fragments extracted= 1 number of extra gaps= 0 total=83776 # 1rcqA.57.14 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 57 :KQIENIYGN 1rcqA 15 :HNYRLAREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83777 # 1h6gA.57.41 read from T0547.t06.many.frag # found chain 1h6gA in template set T0547 57 :KQIENIYGN 1h6gA 418 :EYAQVFREH Number of specific fragments extracted= 1 number of extra gaps= 0 total=83778 # 1u0fA.57.123 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 57 :KQIENIYGN 1u0fA 123 :RVLDKMKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83779 # 1v7wA.57.287 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 57 :KQIENIYGN 1v7wA 288 :AAFAAIKAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=83780 # 1j2rA.57.45 read from T0547.t06.many.frag # found chain 1j2rA in training set T0547 57 :KQIENIYGN 1j2rA 46 :NRAGKLAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83781 # 1of8A.57.85 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 57 :KQIENIYGN 1of8A 86 :EYALRLKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83782 # 1jbwA.57.96 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 57 :KQIENIYGN 1jbwA 97 :NAVAFVRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83783 # 1ryoA.57.16 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 57 :KQIENIYGN 1ryoA 17 :TKCQSFRDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=83784 # 1t92A.57.13 read from T0547.t06.many.frag # found chain 1t92A in training set Warning: unaligning (T0547)G64 (1t92A)G45 because H (helix) conformation "forbidden" or filtered. T0547 57 :KQIENIY 1t92A 38 :SDLVALE T0547 65 :N 1t92A 46 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=83786 # 1upkA.57.44 read from T0547.t06.many.frag # found chain 1upkA in template set T0547 57 :KQIENIYGN 1upkA 45 :KNLVAMKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83787 # 1s9rA.57.55 read from T0547.t06.many.frag # found chain 1s9rA in training set T0547 57 :KQIENIYGN 1s9rA 56 :KEHKQFVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83788 # 2fupA.57.27 read from T0547.t06.many.frag # found chain 2fupA in training set T0547 57 :KQIENIYGN 2fupA 16 :GHANQLLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83789 # 1h16A.57.51 read from T0547.t06.many.frag # found chain 1h16A in training set T0547 57 :KQIENIYGN 1h16A 52 :TLWDKVMEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83790 # 1lvaA.57.65 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 57 :KQIENIYGN 1lvaA 442 :AWWQAVTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83791 # 1evlA.57.153 read from T0547.t06.many.frag # found chain 1evlA in training set T0547 57 :KQIENIYGN 1evlA 395 :DEVNGCIRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83792 # 1zuwA.57.51 read from T0547.t06.many.frag # found chain 1zuwA in training set T0547 57 :KQIENIYGN 1zuwA 52 :QYTWELTNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=83793 # 1r5iD.57.52 read from T0547.t06.many.frag # found chain 1r5iD in template set T0547 57 :KQIENIYGN 1r5iD 50 :LKVNQFYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=83794 # 1uslA.57.23 read from T0547.t06.many.frag # found chain 1uslA in template set T0547 57 :KQIENIYGN 1uslA 16 :ELKQRIIEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=83795 # 2b4vA.57.38 read from T0547.t06.many.frag # found chain 2b4vA in training set T0547 57 :KQIENIYGN 2b4vA 58 :RTAIRAQQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83796 # 1o9rA.57.52 read from T0547.t06.many.frag # found chain 1o9rA in training set T0547 57 :KQIENIYGN 1o9rA 53 :ELLDTFRTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83797 # 1ls1A.57.28 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 57 :KQIENIYGN 1ls1A 29 :ATLREIRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83798 # 1ct5A.57.15 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 57 :KQIENIYGN 1ct5A 17 :AQYESVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83799 # 2etdA.57.28 read from T0547.t06.many.frag # found chain 2etdA in template set T0547 57 :KQIENIYGN 2etdA 51 :NQLQRRADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83800 # 1y0kA.57.11 read from T0547.t06.many.frag # found chain 1y0kA in training set T0547 57 :KQIENIYGN 1y0kA 12 :RQAEQANDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83801 # 7odcA.58.50 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 58 :QIENIYGNF 7odcA 51 :KHLRWLKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83802 # 2d0tA.58.201 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 58 :QIENIYGNF 2d0tA 199 :ALLEIASCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83803 # 1h70A.58.34 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 58 :QIENIYGNF 1h70A 34 :QHNAYIRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83804 # 1qv9A.58.51 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 58 :QIENIYGNF 1qv9A 52 :AVEMALDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83805 # 1jayA.58.39 read from T0547.t06.many.frag # found chain 1jayA in training set T0547 58 :QIENIYGNF 1jayA 40 :KAAEYRRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83806 # 1h6gA.58.42 read from T0547.t06.many.frag # found chain 1h6gA in template set T0547 58 :QIENIYGNF 1h6gA 419 :YAQVFREHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83807 # 2fupA.58.28 read from T0547.t06.many.frag # found chain 2fupA in training set T0547 58 :QIENIYGNF 2fupA 17 :HANQLLQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83808 # 1of8A.58.86 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 58 :QIENIYGNF 1of8A 87 :YALRLKKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=83809 # 1jbwA.58.97 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 58 :QIENIYGNF 1jbwA 98 :AVAFVRAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83810 # 1t92A.58.14 read from T0547.t06.many.frag # found chain 1t92A in training set T0547 58 :QIENIYGNF 1t92A 39 :DLVALEGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83811 # 1u0fA.58.124 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 58 :QIENIYGNF 1u0fA 124 :VLDKMKSFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=83812 # 1tf5A.58.46 read from T0547.t06.many.frag # found chain 1tf5A in template set T0547 58 :QIENIYGNF 1tf5A 44 :KTIEFKERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83813 # 1s9rA.58.56 read from T0547.t06.many.frag # found chain 1s9rA in training set T0547 58 :QIENIYGNF 1s9rA 57 :EHKQFVAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83814 # 1h16A.58.52 read from T0547.t06.many.frag # found chain 1h16A in training set T0547 58 :QIENIYGNF 1h16A 53 :LWDKVMEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83815 # 1r5iD.58.53 read from T0547.t06.many.frag # found chain 1r5iD in template set T0547 58 :QIENIYGNF 1r5iD 51 :KVNQFYRHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83816 # 1o9rA.58.53 read from T0547.t06.many.frag # found chain 1o9rA in training set T0547 58 :QIENIYGNF 1o9rA 54 :LLDTFRTQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83817 # 2b4vA.58.39 read from T0547.t06.many.frag # found chain 2b4vA in training set T0547 58 :QIENIYGNF 2b4vA 59 :TAIRAQQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83818 # 1zuwA.58.52 read from T0547.t06.many.frag # found chain 1zuwA in training set T0547 58 :QIENIYGNF 1zuwA 53 :YTWELTNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83819 # 1ls1A.58.29 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 58 :QIENIYGNF 1ls1A 30 :TLREIRRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83820 # 1upkA.58.45 read from T0547.t06.many.frag # found chain 1upkA in template set T0547 58 :QIENIYGNF 1upkA 46 :NLVAMKEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83821 # 1v7wA.58.288 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 58 :QIENIYGNF 1v7wA 289 :AFAAIKAHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=83822 # 1k0fA.58.134 read from T0547.t06.many.frag # found chain 1k0fA in template set T0547 58 :QIENIYGNF 1k0fA 166 :RYQAYQQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83823 # 1lvaA.58.66 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 58 :QIENIYGNF 1lvaA 443 :WWQAVTRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83824 # 1y0kA.58.12 read from T0547.t06.many.frag # found chain 1y0kA in training set T0547 58 :QIENIYGNF 1y0kA 13 :QAEQANDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83825 # 1uslA.58.24 read from T0547.t06.many.frag # found chain 1uslA in template set T0547 58 :QIENIYGNF 1uslA 17 :LKQRIIEHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83826 # 1lki.58.28 read from T0547.t06.many.frag # found chain 1lki in template set T0547 58 :QIENIYGNF 1lki 29 :QLAQLNGSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83827 # 1ryoA.58.17 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 58 :QIENIYGNF 1ryoA 18 :KCQSFRDHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=83828 # 1vkmA.58.44 read from T0547.t06.many.frag # found chain 1vkmA in template set T0547 58 :QIENIYGNF 1vkmA 33 :LFRRAKEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=83829 # 1td6A.58.58 read from T0547.t06.many.frag # found chain 1td6A in template set T0547 58 :QIENIYGNF 1td6A 47 :QFDKVMELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83830 # 2bnxA.58.24 read from T0547.t06.many.frag # found chain 2bnxA in template set T0547 58 :QIENIYGNF 2bnxA 155 :CLESLRVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83831 # 2d0tA.59.202 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 59 :IENIYGNFN 2d0tA 200 :LLEIASCLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83832 # 1qv9A.59.52 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 59 :IENIYGNFN 1qv9A 53 :VEMALDIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83833 # 1h70A.59.35 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 59 :IENIYGNFN 1h70A 35 :HNAYIRALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83834 # 1h6gA.59.43 read from T0547.t06.many.frag # found chain 1h6gA in template set T0547 59 :IENIYGNFN 1h6gA 420 :AQVFREHAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=83835 # 1jbwA.59.98 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 59 :IENIYGNFN 1jbwA 99 :VAFVRAALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83836 # 1u0fA.59.125 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 59 :IENIYGNFN 1u0fA 125 :LDKMKSFCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83837 # 1t92A.59.15 read from T0547.t06.many.frag # found chain 1t92A in training set T0547 59 :IENIYGNFN 1t92A 40 :LVALEGALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83838 # 1of8A.59.87 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 59 :IENIYGNFN 1of8A 88 :ALRLKKLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83839 # 7odcA.59.51 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 59 :IENIYGNFN 7odcA 52 :HLRWLKALP Number of specific fragments extracted= 1 number of extra gaps= 0 total=83840 # 2fupA.59.29 read from T0547.t06.many.frag # found chain 2fupA in training set T0547 59 :IENIYGNFN 2fupA 18 :ANQLLQLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83841 # 1lvaA.59.67 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 59 :IENIYGNFN 1lvaA 444 :WQAVTRALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83842 # 1h16A.59.53 read from T0547.t06.many.frag # found chain 1h16A in training set T0547 59 :IENIYGNFN 1h16A 54 :WDKVMEGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83843 # 1tf5A.59.47 read from T0547.t06.many.frag # found chain 1tf5A in template set T0547 59 :IENIYGNFN 1tf5A 45 :TIEFKERLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83844 # 1n5uA.59.42 read from T0547.t06.many.frag # found chain 1n5uA in template set T0547 59 :IENIYGNFN 1n5uA 43 :VNEVTEFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83845 # 1r5iD.59.54 read from T0547.t06.many.frag # found chain 1r5iD in template set T0547 59 :IENIYGNFN 1r5iD 52 :VNQFYRHAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83846 # 2b4vA.59.40 read from T0547.t06.many.frag # found chain 2b4vA in training set T0547 59 :IENIYGNFN 2b4vA 60 :AIRAQQQLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83847 # 1s9rA.59.57 read from T0547.t06.many.frag # found chain 1s9rA in training set T0547 59 :IENIYGNFN 1s9rA 58 :HKQFVAELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83848 # 2btoA.59.116 read from T0547.t06.many.frag # found chain 2btoA in template set T0547 59 :IENIYGNFN 2btoA 117 :LPEVMSRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83849 # 1o9rA.59.54 read from T0547.t06.many.frag # found chain 1o9rA in training set T0547 59 :IENIYGNFN 1o9rA 55 :LDTFRTQLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83850 # 1v7wA.59.289 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 59 :IENIYGNFN 1v7wA 290 :FAAIKAHWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83851 # 2bryA.59.30 read from T0547.t06.many.frag # found chain 2bryA in training set T0547 59 :IENIYGNFN 2bryA 23 :CQDVLSSFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83852 # 1y0kA.59.13 read from T0547.t06.many.frag # found chain 1y0kA in training set T0547 59 :IENIYGNFN 1y0kA 14 :AEQANDFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=83853 # 1zhaA.59.22 read from T0547.t06.many.frag # found chain 1zhaA in template set T0547 59 :IENIYGNFN 1zhaA 1023 :GEEIKRLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83854 # 1nogA.59.31 read from T0547.t06.many.frag # found chain 1nogA in training set T0547 59 :IENIYGNFN 1nogA 32 :IDELNSFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83855 # 1ls1A.59.30 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 59 :IENIYGNFN 1ls1A 31 :LREIRRALM Number of specific fragments extracted= 1 number of extra gaps= 0 total=83856 # 1jayA.59.40 read from T0547.t06.many.frag # found chain 1jayA in training set T0547 59 :IENIYGNFN 1jayA 41 :AAEYRRIAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83857 # 1lki.59.29 read from T0547.t06.many.frag # found chain 1lki in template set Warning: unaligning (T0547)G64 (1lki)G35 because H (helix) conformation "forbidden" or filtered. T0547 59 :IENIY 1lki 30 :LAQLN T0547 65 :NFN 1lki 36 :SAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=83859 # 1ryoA.59.18 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 59 :IENIYGNFN 1ryoA 19 :CQSFRDHMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83860 # 2etdA.59.30 read from T0547.t06.many.frag # found chain 2etdA in template set T0547 59 :IENIYGNFN 2etdA 53 :LQRRADLIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=83861 # 1evlA.59.155 read from T0547.t06.many.frag # found chain 1evlA in training set T0547 59 :IENIYGNFN 1evlA 397 :VNGCIRLVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=83862 # 2d0tA.60.203 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 60 :ENIYGNFNK 2d0tA 201 :LEIASCLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83863 # 1h6gA.60.44 read from T0547.t06.many.frag # found chain 1h6gA in template set T0547 60 :ENIYGNFNK 1h6gA 421 :QVFREHANK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83864 # 1jbwA.60.99 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 60 :ENIYGNFNK 1jbwA 100 :AFVRAALER Number of specific fragments extracted= 1 number of extra gaps= 0 total=83865 # 1t92A.60.16 read from T0547.t06.many.frag # found chain 1t92A in training set T0547 60 :ENIYGNFNK 1t92A 41 :VALEGALDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=83866 # 1of8A.60.88 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 60 :ENIYGNFNK 1of8A 89 :LRLKKLSDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83867 # 1qv9A.60.53 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 60 :ENIYGNFNK 1qv9A 54 :EMALDIAED Number of specific fragments extracted= 1 number of extra gaps= 0 total=83868 # 1lvaA.60.68 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 60 :ENIYGNFNK 1lvaA 445 :QAVTRALEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83869 # 1u0fA.60.126 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 60 :ENIYGNFNK 1u0fA 126 :DKMKSFCQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83870 # 2fupA.60.30 read from T0547.t06.many.frag # found chain 2fupA in training set T0547 60 :ENIYGNFNK 2fupA 19 :NQLLQLVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83871 # 1h16A.60.54 read from T0547.t06.many.frag # found chain 1h16A in training set T0547 60 :ENIYGNFNK 1h16A 55 :DKVMEGVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83872 # 1muwA.60.71 read from T0547.t06.many.frag # found chain 1muwA in training set T0547 60 :ENIYGNFNK 1muwA 72 :KRFRQALDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83873 # 1v7wA.60.290 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 60 :ENIYGNFNK 1v7wA 291 :AAIKAHWDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83874 # 1ls1A.60.31 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 60 :ENIYGNFNK 1ls1A 32 :REIRRALMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83875 # 1ryoA.60.19 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 60 :ENIYGNFNK 1ryoA 20 :QSFRDHMKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=83876 # 2btoA.60.117 read from T0547.t06.many.frag # found chain 2btoA in template set T0547 60 :ENIYGNFNK 2btoA 118 :PEVMSRLDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=83877 # 1o9rA.60.55 read from T0547.t06.many.frag # found chain 1o9rA in training set T0547 60 :ENIYGNFNK 1o9rA 56 :DTFRTQLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=83878 # 1n5uA.60.43 read from T0547.t06.many.frag # found chain 1n5uA in template set T0547 60 :ENIYGNFNK 1n5uA 44 :NEVTEFAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=83879 # 2aqlA.60.68 read from T0547.t06.many.frag # found chain 2aqlA in template set T0547 60 :ENIYGNFNK 2aqlA 219 :AGIKEYFNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83880 # 2b4vA.60.41 read from T0547.t06.many.frag # found chain 2b4vA in training set T0547 60 :ENIYGNFNK 2b4vA 61 :IRAQQQLQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83881 # 1h70A.60.36 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 60 :ENIYGNFNK 1h70A 36 :NAYIRALQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=83882 # 1zhaA.60.23 read from T0547.t06.many.frag # found chain 1zhaA in template set T0547 60 :ENIYGNFNK 1zhaA 1024 :EEIKRLSEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83883 # 1vdkA.60.164 read from T0547.t06.many.frag # found chain 1vdkA in training set T0547 60 :ENIYGNFNK 1vdkA 165 :EGLIRTFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83884 # 1y0kA.60.14 read from T0547.t06.many.frag # found chain 1y0kA in training set T0547 60 :ENIYGNFNK 1y0kA 15 :EQANDFLSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=83885 # 1ct5A.60.18 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 60 :ENIYGNFNK 1ct5A 20 :ESVREVVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83886 # 1mswD.60.78 read from T0547.t06.many.frag # found chain 1mswD in template set T0547 60 :ENIYGNFNK 1mswD 79 :PKMIARIND Number of specific fragments extracted= 1 number of extra gaps= 0 total=83887 # 1sziA.60.76 read from T0547.t06.many.frag # found chain 1sziA in template set T0547 60 :ENIYGNFNK 1sziA 267 :QKAQETLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83888 # 2bryA.60.31 read from T0547.t06.many.frag # found chain 2bryA in training set T0547 60 :ENIYGNFNK 2bryA 24 :QDVLSSFQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83889 # 1r0dA.60.22 read from T0547.t06.many.frag # found chain 1r0dA in template set T0547 60 :ENIYGNFNK 1r0dA 788 :AATSAAIED Number of specific fragments extracted= 1 number of extra gaps= 0 total=83890 # 1tf5A.60.48 read from T0547.t06.many.frag # found chain 1tf5A in template set T0547 60 :ENIYGNFNK 1tf5A 46 :IEFKERLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83891 # 1b5l.60.11 read from T0547.t06.many.frag # found chain 1b5l in template set T0547 60 :ENIYGNFNK 1b5l 12 :RENLKLLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83892 # 2d0tA.61.204 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 61 :NIYGNFNKA 2d0tA 202 :EIASCLEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83893 # 2btoA.61.118 read from T0547.t06.many.frag # found chain 2btoA in template set T0547 61 :NIYGNFNKA 2btoA 119 :EVMSRLDYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83894 # 1t92A.61.17 read from T0547.t06.many.frag # found chain 1t92A in training set Warning: unaligning (T0547)G64 (1t92A)G45 because H (helix) conformation "forbidden" or filtered. T0547 61 :NIY 1t92A 42 :ALE T0547 65 :NFNKA 1t92A 46 :ALDMY Number of specific fragments extracted= 2 number of extra gaps= 1 total=83896 # 1h6gA.61.45 read from T0547.t06.many.frag # found chain 1h6gA in template set T0547 61 :NIYGNFNKA 1h6gA 422 :VFREHANKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83897 # 1qv9A.61.54 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 61 :NIYGNFNKA 1qv9A 55 :MALDIAEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83898 # 2bryA.61.32 read from T0547.t06.many.frag # found chain 2bryA in training set T0547 61 :NIYGNFNKA 2bryA 25 :DVLSSFQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83899 # 1jbwA.61.100 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 61 :NIYGNFNKA 1jbwA 101 :FVRAALERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83900 # 2fupA.61.31 read from T0547.t06.many.frag # found chain 2fupA in training set T0547 61 :NIYGNFNKA 2fupA 20 :QLLQLVDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83901 # 1n5uA.61.44 read from T0547.t06.many.frag # found chain 1n5uA in template set T0547 61 :NIYGNFNKA 1n5uA 45 :EVTEFAKTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=83902 # 1lvaA.61.69 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 61 :NIYGNFNKA 1lvaA 446 :AVTRALEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83903 # 1mj5A.61.83 read from T0547.t06.many.frag # found chain 1mj5A in training set T0547 61 :NIYGNFNKA 1mj5A 84 :EHRDYLDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83904 # 1of8A.61.89 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 61 :NIYGNFNKA 1of8A 90 :RLKKLSDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83905 # 1h16A.61.55 read from T0547.t06.many.frag # found chain 1h16A in training set T0547 61 :NIYGNFNKA 1h16A 56 :KVMEGVKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83906 # 1o9rA.61.56 read from T0547.t06.many.frag # found chain 1o9rA in training set T0547 61 :NIYGNFNKA 1o9rA 57 :TFRTQLDNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=83907 # 1v7wA.61.291 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 61 :NIYGNFNKA 1v7wA 292 :AIKAHWDER Number of specific fragments extracted= 1 number of extra gaps= 0 total=83908 # 1u0fA.61.127 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 61 :NIYGNFNKA 1u0fA 127 :KMKSFCQRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83909 # 1muwA.61.72 read from T0547.t06.many.frag # found chain 1muwA in training set T0547 61 :NIYGNFNKA 1muwA 73 :RFRQALDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=83910 # 2b4vA.61.42 read from T0547.t06.many.frag # found chain 2b4vA in training set T0547 61 :NIYGNFNKA 2b4vA 62 :RAQQQLQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83911 # 1mswD.61.79 read from T0547.t06.many.frag # found chain 1mswD in template set T0547 61 :NIYGNFNKA 1mswD 80 :KMIARINDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=83912 # 1ryoA.61.20 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 61 :NIYGNFNKA 1ryoA 21 :SFRDHMKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83913 # 1sziA.61.77 read from T0547.t06.many.frag # found chain 1sziA in template set T0547 61 :NIYGNFNKA 1sziA 268 :KAQETLQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83914 # 1vdkA.61.165 read from T0547.t06.many.frag # found chain 1vdkA in training set T0547 61 :NIYGNFNKA 1vdkA 166 :GLIRTFTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83915 # 2a2fX.61.22 read from T0547.t06.many.frag # found chain 2a2fX in template set T0547 61 :NIYGNFNKA 2a2fX 23 :RWVHVFREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83916 # 1zwwA.61.45 read from T0547.t06.many.frag # found chain 1zwwA in template set T0547 61 :NIYGNFNKA 1zwwA 46 :AVMEIMTKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=83917 # 2aqlA.61.69 read from T0547.t06.many.frag # found chain 2aqlA in template set T0547 61 :NIYGNFNKA 2aqlA 220 :GIKEYFNVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=83918 # 2b0cA.61.94 read from T0547.t06.many.frag # found chain 2b0cA in template set T0547 61 :NIYGNFNKA 2b0cA 95 :EVIAIMHKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83919 # 1f1mA.61.23 read from T0547.t06.many.frag # found chain 1f1mA in training set T0547 61 :NIYGNFNKA 1f1mA 61 :EVETLLTSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83920 # 1rwhA.61.38 read from T0547.t06.many.frag # found chain 1rwhA in training set T0547 61 :NIYGNFNKA 1rwhA 39 :ALNNKAADS Number of specific fragments extracted= 1 number of extra gaps= 0 total=83921 # 1y0kA.61.15 read from T0547.t06.many.frag # found chain 1y0kA in training set T0547 61 :NIYGNFNKA 1y0kA 16 :QANDFLSNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83922 # 1vkmA.61.47 read from T0547.t06.many.frag # found chain 1vkmA in template set T0547 61 :NIYGNFNKA 1vkmA 36 :RAKEISREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83923 # 2d0tA.62.205 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 62 :IYGNFNKAR 2d0tA 203 :IASCLEKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83924 # 1t92A.62.18 read from T0547.t06.many.frag # found chain 1t92A in training set T0547 62 :IYGNFNKAR 1t92A 43 :LEGALDMYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83925 # 1lvaA.62.70 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 62 :IYGNFNKAR 1lvaA 447 :VTRALEEFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=83926 # 2fupA.62.32 read from T0547.t06.many.frag # found chain 2fupA in training set T0547 62 :IYGNFNKAR 2fupA 21 :LLQLVDEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83927 # 1n5uA.62.45 read from T0547.t06.many.frag # found chain 1n5uA in template set T0547 62 :IYGNFNKAR 1n5uA 46 :VTEFAKTCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83928 # 2btoA.62.119 read from T0547.t06.many.frag # found chain 2btoA in template set T0547 62 :IYGNFNKAR 2btoA 120 :VMSRLDYEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83929 # 1jbwA.62.101 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 62 :IYGNFNKAR 1jbwA 102 :VRAALERLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83930 # 2a2fX.62.23 read from T0547.t06.many.frag # found chain 2a2fX in template set T0547 62 :IYGNFNKAR 2a2fX 24 :WVHVFREIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83931 # 1mj5A.62.84 read from T0547.t06.many.frag # found chain 1mj5A in training set T0547 62 :IYGNFNKAR 1mj5A 85 :HRDYLDALW Number of specific fragments extracted= 1 number of extra gaps= 0 total=83932 # 2bryA.62.33 read from T0547.t06.many.frag # found chain 2bryA in training set T0547 62 :IYGNFNKAR 2bryA 26 :VLSSFQGLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=83933 # 1h6gA.62.46 read from T0547.t06.many.frag # found chain 1h6gA in template set T0547 62 :IYGNFNKAR 1h6gA 423 :FREHANKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83934 # 1vdkA.62.166 read from T0547.t06.many.frag # found chain 1vdkA in training set T0547 62 :IYGNFNKAR 1vdkA 167 :LIRTFTAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83935 # 1mswD.62.80 read from T0547.t06.many.frag # found chain 1mswD in template set T0547 62 :IYGNFNKAR 1mswD 81 :MIARINDWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83936 # 1v7wA.62.292 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 62 :IYGNFNKAR 1v7wA 293 :IKAHWDERC Number of specific fragments extracted= 1 number of extra gaps= 0 total=83937 # 1zwwA.62.46 read from T0547.t06.many.frag # found chain 1zwwA in template set T0547 62 :IYGNFNKAR 1zwwA 47 :VMEIMTKTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83938 # 1o9rA.62.57 read from T0547.t06.many.frag # found chain 1o9rA in training set T0547 62 :IYGNFNKAR 1o9rA 58 :FRTQLDNHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=83939 # 2b0cA.62.95 read from T0547.t06.many.frag # found chain 2b0cA in template set T0547 62 :IYGNFNKAR 2b0cA 96 :VIAIMHKLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83940 # 1u0fA.62.128 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 62 :IYGNFNKAR 1u0fA 128 :MKSFCQRVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83941 # 1of8A.62.90 read from T0547.t06.many.frag # found chain 1of8A in training set T0547 62 :IYGNFNKAR 1of8A 91 :LKKLSDELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83942 # 1r0dA.62.24 read from T0547.t06.many.frag # found chain 1r0dA in template set T0547 62 :IYGNFNKAR 1r0dA 790 :TSAAIEDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83943 # 1yzyA.62.178 read from T0547.t06.many.frag # found chain 1yzyA in template set T0547 62 :IYGNFNKAR 1yzyA 178 :VQECFAELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83944 # 2bk9A.62.64 read from T0547.t06.many.frag # found chain 2bk9A in training set T0547 62 :IYGNFNKAR 2bk9A 65 :IIRVFDESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83945 # 1ct5A.62.20 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 62 :IYGNFNKAR 1ct5A 22 :VREVVNAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83946 # 1rwhA.62.39 read from T0547.t06.many.frag # found chain 1rwhA in training set T0547 62 :IYGNFNKAR 1rwhA 40 :LNNKAADSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83947 1qoyA expands to /projects/compbio/data/pdb/1qoy.pdb.gz 1qoyA:# 1qoyA.62.79 read from T0547.t06.many.frag # adding 1qoyA to template set # found chain 1qoyA in template set T0547 62 :IYGNFNKAR 1qoyA 65 :IKTLLMDSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83948 # 1h16A.62.56 read from T0547.t06.many.frag # found chain 1h16A in training set T0547 62 :IYGNFNKAR 1h16A 57 :VMEGVKLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=83949 # 1b5l.62.13 read from T0547.t06.many.frag # found chain 1b5l in template set T0547 62 :IYGNFNKAR 1b5l 14 :NLKLLDRMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=83950 1k04A expands to /projects/compbio/data/pdb/1k04.pdb.gz 1k04A:# 1k04A.62.70 read from T0547.t06.many.frag # adding 1k04A to template set # found chain 1k04A in template set T0547 62 :IYGNFNKAR 1k04A 961 :LRTLLATVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83951 # 2aplA.62.40 read from T0547.t06.many.frag # found chain 2aplA in template set T0547 62 :IYGNFNKAR 2aplA 41 :ALTAYCDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83952 # 1o08A.62.19 read from T0547.t06.many.frag # found chain 1o08A in training set T0547 62 :IYGNFNKAR 1o08A 1020 :HFRAWKALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83953 # 2d0tA.63.206 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 63 :YGNFNKARK 2d0tA 204 :ASCLEKALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83954 # 1jbwA.63.102 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 63 :YGNFNKARK 1jbwA 103 :RAALERLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83955 # 1lvaA.63.71 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 63 :YGNFNKARK 1lvaA 448 :TRALEEFHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=83956 # 1t92A.63.19 read from T0547.t06.many.frag # found chain 1t92A in training set Warning: unaligning (T0547)G64 (1t92A)G45 because H (helix) conformation "forbidden" or filtered. T0547 63 :Y 1t92A 44 :E T0547 65 :NFNKARK 1t92A 46 :ALDMYKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=83958 # 2fupA.63.33 read from T0547.t06.many.frag # found chain 2fupA in training set T0547 63 :YGNFNKARK 2fupA 22 :LQLVDEEFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83959 # 1zwwA.63.47 read from T0547.t06.many.frag # found chain 1zwwA in template set T0547 63 :YGNFNKARK 1zwwA 48 :MEIMTKTIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83960 # 1mj5A.63.85 read from T0547.t06.many.frag # found chain 1mj5A in training set T0547 63 :YGNFNKARK 1mj5A 86 :RDYLDALWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83961 # 2bryA.63.34 read from T0547.t06.many.frag # found chain 2bryA in training set T0547 63 :YGNFNKARK 2bryA 27 :LSSFQGLCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83962 # 1mswD.63.81 read from T0547.t06.many.frag # found chain 1mswD in template set T0547 63 :YGNFNKARK 1mswD 82 :IARINDWFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83963 # 2a2fX.63.24 read from T0547.t06.many.frag # found chain 2a2fX in template set T0547 63 :YGNFNKARK 2a2fX 25 :VHVFREILD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83964 # 2btoA.63.120 read from T0547.t06.many.frag # found chain 2btoA in template set T0547 63 :YGNFNKARK 2btoA 121 :MSRLDYEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=83965 # 1rwhA.63.40 read from T0547.t06.many.frag # found chain 1rwhA in training set T0547 63 :YGNFNKARK 1rwhA 41 :NNKAADSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83966 # 1o9rA.63.58 read from T0547.t06.many.frag # found chain 1o9rA in training set T0547 63 :YGNFNKARK 1o9rA 59 :RTQLDNHGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83967 # 1n5uA.63.46 read from T0547.t06.many.frag # found chain 1n5uA in template set T0547 63 :YGNFNKARK 1n5uA 47 :TEFAKTCVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83968 # 2b0cA.63.96 read from T0547.t06.many.frag # found chain 2b0cA in template set T0547 63 :YGNFNKARK 2b0cA 97 :IAIMHKLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83969 # 1vdkA.63.167 read from T0547.t06.many.frag # found chain 1vdkA in training set T0547 63 :YGNFNKARK 1vdkA 168 :IRTFTAKAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83970 # 1v7wA.63.293 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 63 :YGNFNKARK 1v7wA 294 :KAHWDERCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83971 # 1h6gA.63.47 read from T0547.t06.many.frag # found chain 1h6gA in template set T0547 63 :YGNFNKARK 1h6gA 424 :REHANKLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83972 # 1guqA.63.134 read from T0547.t06.many.frag # found chain 1guqA in training set T0547 63 :YGNFNKARK 1guqA 135 :QEQTAELGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83973 # 1u0fA.63.129 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 63 :YGNFNKARK 1u0fA 129 :KSFCQRVRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=83974 # 1ct5A.63.21 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 63 :YGNFNKARK 1ct5A 23 :REVVNAEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83975 # 1k04A.63.71 read from T0547.t06.many.frag # found chain 1k04A in template set T0547 63 :YGNFNKARK 1k04A 962 :RTLLATVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83976 # 2aplA.63.41 read from T0547.t06.many.frag # found chain 2aplA in template set T0547 63 :YGNFNKARK 2aplA 42 :LTAYCDAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83977 # 2b4vA.63.44 read from T0547.t06.many.frag # found chain 2b4vA in training set T0547 63 :YGNFNKARK 2b4vA 64 :QQQLQGLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=83978 # 1r0dA.63.25 read from T0547.t06.many.frag # found chain 1r0dA in template set T0547 63 :YGNFNKARK 1r0dA 791 :SAAIEDAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83979 # 2bk9A.63.65 read from T0547.t06.many.frag # found chain 2bk9A in training set T0547 63 :YGNFNKARK 2bk9A 66 :IRVFDESIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83980 # 2aebA.63.80 read from T0547.t06.many.frag # found chain 2aebA in training set T0547 63 :YGNFNKARK 2aebA 81 :AGKVAEVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83981 # 1evlA.63.159 read from T0547.t06.many.frag # found chain 1evlA in training set T0547 63 :YGNFNKARK 1evlA 401 :IRLVYDMYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=83982 # 1b5l.63.14 read from T0547.t06.many.frag # found chain 1b5l in template set T0547 63 :YGNFNKARK 1b5l 15 :LKLLDRMNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83983 # 1iuqA.63.40 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 63 :YGNFNKARK 1iuqA 42 :YQNYRNAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=83984 # 2d0tA.64.207 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 64 :GNFNKARKE 2d0tA 205 :SCLEKALQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=83985 # 1lvaA.64.72 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 64 :GNFNKARKE 1lvaA 449 :RALEEFHSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=83986 # 1zwwA.64.48 read from T0547.t06.many.frag # found chain 1zwwA in template set T0547 64 :GNFNKARKE 1zwwA 49 :EIMTKTIEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=83987 # 2a2fX.64.25 read from T0547.t06.many.frag # found chain 2a2fX in template set T0547 64 :GNFNKARKE 2a2fX 26 :HVFREILDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83988 # 1mj5A.64.86 read from T0547.t06.many.frag # found chain 1mj5A in training set T0547 64 :GNFNKARKE 1mj5A 87 :DYLDALWEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83989 # 1t92A.64.20 read from T0547.t06.many.frag # found chain 1t92A in training set Warning: unaligning (T0547)G64 (1t92A)G45 because H (helix) conformation "forbidden" or filtered. T0547 65 :NFNKARKE 1t92A 46 :ALDMYKLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=83990 # 2fupA.64.34 read from T0547.t06.many.frag # found chain 2fupA in training set T0547 64 :GNFNKARKE 2fupA 23 :QLVDEEFQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83991 # 1jbwA.64.103 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 64 :GNFNKARKE 1jbwA 104 :AALERLQQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=83992 # 1rwhA.64.41 read from T0547.t06.many.frag # found chain 1rwhA in training set T0547 64 :GNFNKARKE 1rwhA 42 :NKAADSLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83993 # 2bryA.64.35 read from T0547.t06.many.frag # found chain 2bryA in training set T0547 64 :GNFNKARKE 2bryA 28 :SSFQGLCRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=83994 # 1mswD.64.82 read from T0547.t06.many.frag # found chain 1mswD in template set T0547 64 :GNFNKARKE 1mswD 83 :ARINDWFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=83995 # 1guqA.64.135 read from T0547.t06.many.frag # found chain 1guqA in training set T0547 64 :GNFNKARKE 1guqA 136 :EQTAELGKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=83996 # 2btoA.64.121 read from T0547.t06.many.frag # found chain 2btoA in template set T0547 64 :GNFNKARKE 2btoA 122 :SRLDYEIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=83997 # 1b5l.64.15 read from T0547.t06.many.frag # found chain 1b5l in template set T0547 64 :GNFNKARKE 1b5l 16 :KLLDRMNRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=83998 # 1n5uA.64.47 read from T0547.t06.many.frag # found chain 1n5uA in template set Warning: unaligning (T0547)E72 (1n5uA)D56 because D (zeta) conformation "forbidden" or filtered. T0547 64 :GNFNKARK 1n5uA 48 :EFAKTCVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=83999 # 1vdkA.64.168 read from T0547.t06.many.frag # found chain 1vdkA in training set T0547 64 :GNFNKARKE 1vdkA 169 :RTFTAKAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=84000 # 2cx6A.64.70 read from T0547.t06.many.frag # found chain 2cx6A in template set T0547 64 :GNFNKARKE 2cx6A 71 :LLFDEAEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=84001 # 1r0dA.64.26 read from T0547.t06.many.frag # found chain 1r0dA in template set T0547 64 :GNFNKARKE 1r0dA 792 :AAIEDAVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=84002 # 1k04A.64.72 read from T0547.t06.many.frag # found chain 1k04A in template set T0547 64 :GNFNKARKE 1k04A 963 :TLLATVDET Number of specific fragments extracted= 1 number of extra gaps= 0 total=84003 # 1f1mA.64.26 read from T0547.t06.many.frag # found chain 1f1mA in training set T0547 64 :GNFNKARKE 1f1mA 64 :TLLTSIDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84004 # 1evlA.64.160 read from T0547.t06.many.frag # found chain 1evlA in training set T0547 64 :GNFNKARKE 1evlA 402 :RLVYDMYST Number of specific fragments extracted= 1 number of extra gaps= 0 total=84005 # 1o08A.64.21 read from T0547.t06.many.frag # found chain 1o08A in training set T0547 64 :GNFNKARKE 1o08A 1022 :RAWKALAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=84006 # 1o9rA.64.59 read from T0547.t06.many.frag # found chain 1o9rA in training set T0547 64 :GNFNKARKE 1o9rA 60 :TQLDNHGDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=84007 # 1kpf.64.78 read from T0547.t06.many.frag # found chain 1kpf in training set T0547 64 :GNFNKARKE 1kpf 79 :IVGKKCAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=84008 # 2b0cA.64.97 read from T0547.t06.many.frag # found chain 2b0cA in template set T0547 64 :GNFNKARKE 2b0cA 98 :AIMHKLREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=84009 # 1ru3A.64.40 read from T0547.t06.many.frag # found chain 1ru3A in template set T0547 64 :GNFNKARKE 1ru3A 41 :ILLSRAIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=84010 # 2bk9A.64.66 read from T0547.t06.many.frag # found chain 2bk9A in training set T0547 64 :GNFNKARKE 2bk9A 67 :RVFDESIQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=84011 # 1vpqA.64.108 read from T0547.t06.many.frag # found chain 1vpqA in template set T0547 64 :GNFNKARKE 1vpqA 97 :RQIEPLIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=84012 # 2aplA.64.42 read from T0547.t06.many.frag # found chain 2aplA in template set T0547 64 :GNFNKARKE 2aplA 43 :TAYCDAVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=84013 # 1v7wA.64.294 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 64 :GNFNKARKE 1v7wA 295 :AHWDERCAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=84014 # 1zwwA.65.49 read from T0547.t06.many.frag # found chain 1zwwA in template set T0547 65 :NFNKARKEF 1zwwA 50 :IMTKTIEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84015 # 1rwhA.65.42 read from T0547.t06.many.frag # found chain 1rwhA in training set T0547 65 :NFNKARKEF 1rwhA 43 :KAADSLAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84016 # 2d0tA.65.208 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 65 :NFNKARKEF 2d0tA 206 :CLEKALQVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=84017 # 1lvaA.65.73 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 65 :NFNKARKEF 1lvaA 450 :ALEEFHSRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=84018 # 1gvnA.65.23 read from T0547.t06.many.frag # found chain 1gvnA in template set T0547 65 :NFNKARKEF 1gvnA 24 :RVLNYVLNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=84019 # 1mj5A.65.87 read from T0547.t06.many.frag # found chain 1mj5A in training set T0547 65 :NFNKARKEF 1mj5A 88 :YLDALWEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84020 # 1evlA.65.161 read from T0547.t06.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)F73 (1evlA)F411 because G (3-10) conformation "forbidden" or filtered. T0547 65 :NFNKARKE 1evlA 403 :LVYDMYST Number of specific fragments extracted= 1 number of extra gaps= 1 total=84021 # 2a2fX.65.26 read from T0547.t06.many.frag # found chain 2a2fX in template set Warning: unaligning (T0547)F73 (2a2fX)E35 because G (3-10) conformation "forbidden" or filtered. T0547 65 :NFNKARKE 2a2fX 27 :VFREILDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=84022 # 1mswD.65.83 read from T0547.t06.many.frag # found chain 1mswD in template set T0547 65 :NFNKARKEF 1mswD 84 :RINDWFEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=84023 # 1ru3A.65.41 read from T0547.t06.many.frag # found chain 1ru3A in template set T0547 65 :NFNKARKEF 1ru3A 42 :LLSRAIEKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=84024 # 1jftA.65.33 read from T0547.t06.many.frag # found chain 1jftA in template set T0547 65 :NFNKARKEF 1jftA 35 :AVWAAIKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84025 # 2cx6A.65.71 read from T0547.t06.many.frag # found chain 2cx6A in template set T0547 65 :NFNKARKEF 2cx6A 72 :LFDEAEEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84026 # 1o08A.65.22 read from T0547.t06.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)F73 (1o08A)I1031 because G (3-10) conformation "forbidden" or filtered. T0547 65 :NFNKARKE 1o08A 1023 :AWKALAEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=84027 # 1guqA.65.136 read from T0547.t06.many.frag # found chain 1guqA in training set T0547 65 :NFNKARKEF 1guqA 137 :QTAELGKTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=84028 # 1t92A.65.21 read from T0547.t06.many.frag # found chain 1t92A in training set Warning: unaligning (T0547)F73 (1t92A)N54 because G (3-10) conformation "forbidden" or filtered. T0547 65 :NFNKARKE 1t92A 46 :ALDMYKLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=84029 # 1vdkA.65.169 read from T0547.t06.many.frag # found chain 1vdkA in training set T0547 65 :NFNKARKEF 1vdkA 170 :TFTAKAQAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=84030 # 2bryA.65.36 read from T0547.t06.many.frag # found chain 2bryA in training set T0547 65 :NFNKARKEF 2bryA 29 :SFQGLCRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84031 # 1kpf.65.79 read from T0547.t06.many.frag # found chain 1kpf in training set T0547 65 :NFNKARKEF 1kpf 80 :VGKKCAADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84032 # 1r0dA.65.27 read from T0547.t06.many.frag # found chain 1r0dA in template set T0547 65 :NFNKARKEF 1r0dA 793 :AIEDAVRRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=84033 # 2bk9A.65.67 read from T0547.t06.many.frag # found chain 2bk9A in training set T0547 65 :NFNKARKEF 2bk9A 68 :VFDESIQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84034 # 2aplA.65.43 read from T0547.t06.many.frag # found chain 2aplA in template set T0547 65 :NFNKARKEF 2aplA 44 :AYCDAVAQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84035 # 1x7dA.65.28 read from T0547.t06.many.frag # found chain 1x7dA in training set T0547 65 :NFNKARKEF 1x7dA 29 :ALRDDFKRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=84036 # 1iuqA.65.42 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 65 :NFNKARKEF 1iuqA 44 :NYRNAVIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=84037 # 2al2A.65.226 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 T0547 65 :NFNKARKE 2al2A 227 :LIVDAIKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=84038 # 2fupA.65.35 read from T0547.t06.many.frag # found chain 2fupA in training set T0547 65 :NFNKARKEF 2fupA 24 :LVDEEFQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84039 # 1n5uA.65.48 read from T0547.t06.many.frag # found chain 1n5uA in template set T0547 65 :NFNKARKEF 1n5uA 49 :FAKTCVADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=84040 # 1b5l.65.16 read from T0547.t06.many.frag # found chain 1b5l in template set T0547 65 :NFNKARKEF 1b5l 17 :LLDRMNRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=84041 # 2btoA.65.122 read from T0547.t06.many.frag # found chain 2btoA in template set T0547 65 :NFNKARKEF 2btoA 123 :RLDYEIDKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=84042 # 1lqvA.65.78 read from T0547.t06.many.frag # found chain 1lqvA in training set Warning: unaligning (T0547)F73 (1lqvA)R87 because G (3-10) conformation "forbidden" or filtered. T0547 65 :NFNKARKE 1lqvA 79 :LVRLVHQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=84043 # 2f2gA.65.90 read from T0547.t06.many.frag # found chain 2f2gA in template set T0547 65 :NFNKARKEF 2f2gA 91 :WFKREGSKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=84044 # 1mj5A.66.88 read from T0547.t06.many.frag # found chain 1mj5A in training set T0547 66 :FNKARKEFG 1mj5A 89 :LDALWEALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=84045 # 1zwwA.66.50 read from T0547.t06.many.frag # found chain 1zwwA in template set Warning: unaligning (T0547)G74 (1zwwA)Q59 because D (zeta) conformation "forbidden" or filtered. T0547 66 :FNKARKEF 1zwwA 51 :MTKTIEYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=84046 # 1evlA.66.162 read from T0547.t06.many.frag # found chain 1evlA in training set T0547 66 :FNKARKEFG 1evlA 404 :VYDMYSTFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84047 # 2a2fX.66.27 read from T0547.t06.many.frag # found chain 2a2fX in template set Warning: unaligning (T0547)F73 (2a2fX)E35 because G (3-10) conformation "forbidden" or filtered. T0547 66 :FNKARKE 2a2fX 28 :FREILDK T0547 74 :G 2a2fX 36 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=84049 # 1rwhA.66.43 read from T0547.t06.many.frag # found chain 1rwhA in training set Warning: unaligning (T0547)G74 (1rwhA)D52 because P (beta_P) conformation "forbidden" or filtered. T0547 66 :FNKARKEF 1rwhA 44 :AADSLAKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=84050 # 2bryA.66.37 read from T0547.t06.many.frag # found chain 2bryA in training set T0547 66 :FNKARKEFG 2bryA 30 :FQGLCRALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84051 # 2d0tA.66.209 read from T0547.t06.many.frag # found chain 2d0tA in template set T0547 66 :FNKARKEFG 2d0tA 207 :LEKALQVFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=84052 # 1kpf.66.80 read from T0547.t06.many.frag # found chain 1kpf in training set T0547 66 :FNKARKEFG 1kpf 81 :GKKCAADLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84053 # 1lvaA.66.74 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 66 :FNKARKEFG 1lvaA 451 :LEEFHSRYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=84054 # 1jftA.66.34 read from T0547.t06.many.frag # found chain 1jftA in template set T0547 66 :FNKARKEFG 1jftA 36 :VWAAIKELH Number of specific fragments extracted= 1 number of extra gaps= 0 total=84055 # 1o08A.66.23 read from T0547.t06.many.frag # found chain 1o08A in training set T0547 66 :FNKARKEFG 1o08A 1024 :WKALAEEIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84056 # 1gvnA.66.24 read from T0547.t06.many.frag # found chain 1gvnA in template set T0547 66 :FNKARKEFG 1gvnA 25 :VLNYVLNHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=84057 # 1ru3A.66.42 read from T0547.t06.many.frag # found chain 1ru3A in template set T0547 66 :FNKARKEFG 1ru3A 43 :LSRAIEKYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84058 # 1pmi.66.80 read from T0547.t06.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)F66 (1pmi)G82 because S (epsilon) conformation "forbidden" or filtered. T0547 67 :NKARKEFG 1pmi 83 :ESIITKFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=84059 # 2al2A.66.227 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 T0547 66 :FNKARKE 2al2A 228 :IVDAIKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=84060 # 2btoA.66.123 read from T0547.t06.many.frag # found chain 2btoA in template set T0547 66 :FNKARKEFG 2btoA 124 :LDYEIDKCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=84061 # 2cx6A.66.72 read from T0547.t06.many.frag # found chain 2cx6A in template set T0547 66 :FNKARKEFG 2cx6A 73 :FDEAEEELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=84062 # 1qoyA.66.54 read from T0547.t06.many.frag # found chain 1qoyA in template set Warning: unaligning (T0547)G74 (1qoyA)S48 because G (3-10) conformation "forbidden" or filtered. T0547 66 :FNKARKEF 1qoyA 40 :FDETIKEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=84063 # 1mswD.66.84 read from T0547.t06.many.frag # found chain 1mswD in template set T0547 66 :FNKARKEFG 1mswD 85 :INDWFEEVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=84064 # 1ow1A.66.90 read from T0547.t06.many.frag # found chain 1ow1A in training set T0547 66 :FNKARKEFG 1ow1A 3560 :LEGVARRMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=84065 # 1vdkA.66.170 read from T0547.t06.many.frag # found chain 1vdkA in training set T0547 66 :FNKARKEFG 1vdkA 171 :FTAKAQAFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=84066 # 1zc6A.66.59 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)F73 (1zc6A)A67 because G (3-10) conformation "forbidden" or filtered. T0547 66 :FNKARKE 1zc6A 60 :LEAAFQQ T0547 74 :G 1zc6A 68 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=84068 # 2bk9A.66.68 read from T0547.t06.many.frag # found chain 2bk9A in training set T0547 66 :FNKARKEFG 2bk9A 69 :FDESIQVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84069 # 1zv1A.66.12 read from T0547.t06.many.frag # found chain 1zv1A in training set T0547 66 :FNKARKEFG 1zv1A 13 :CQKLLEKFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=84070 # 1n5uA.66.49 read from T0547.t06.many.frag # found chain 1n5uA in template set Warning: unaligning (T0547)E72 (1n5uA)D56 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G74 (1n5uA)S58 because G (3-10) conformation "forbidden" or filtered. T0547 66 :FNKARK 1n5uA 50 :AKTCVA T0547 73 :F 1n5uA 57 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=84072 # 1lqvA.66.79 read from T0547.t06.many.frag # found chain 1lqvA in training set T0547 66 :FNKARKEFG 1lqvA 80 :VRLVHQERT Number of specific fragments extracted= 1 number of extra gaps= 0 total=84073 # 1j2zA.66.227 read from T0547.t06.many.frag # found chain 1j2zA in template set T0547 66 :FNKARKEFG 1j2zA 228 :AKLELEEHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=84074 # 1i88A.66.109 read from T0547.t06.many.frag # found chain 1i88A in training set T0547 66 :FNKARKEFG 1i88A 110 :AVKAIKEWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84075 # 1h72C.66.63 read from T0547.t06.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)F73 (1h72C)F75 because G (3-10) conformation "forbidden" or filtered. T0547 66 :FNKARKE 1h72C 68 :AKKMIDD T0547 74 :G 1h72C 76 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=84077 # 2f2gA.66.91 read from T0547.t06.many.frag # found chain 2f2gA in template set T0547 66 :FNKARKEFG 2f2gA 92 :FKREGSKWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=84078 # 1mj5A.67.89 read from T0547.t06.many.frag # found chain 1mj5A in training set T0547 67 :NKARKEFGY 1mj5A 90 :DALWEALDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84079 # 1zwwA.67.51 read from T0547.t06.many.frag # found chain 1zwwA in template set Warning: unaligning (T0547)G74 (1zwwA)Q59 because D (zeta) conformation "forbidden" or filtered. T0547 67 :NKARKEF 1zwwA 52 :TKTIEYL T0547 75 :Y 1zwwA 60 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=84081 # 1rwhA.67.44 read from T0547.t06.many.frag # found chain 1rwhA in training set T0547 67 :NKARKEFGY 1rwhA 45 :ADSLAKLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=84082 # 1gvnA.67.25 read from T0547.t06.many.frag # found chain 1gvnA in template set Warning: unaligning (T0547)F73 (1gvnA)H32 because G (3-10) conformation "forbidden" or filtered. T0547 67 :NKARKE 1gvnA 26 :LNYVLN T0547 74 :GY 1gvnA 33 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84084 # 1kpf.67.81 read from T0547.t06.many.frag # found chain 1kpf in training set T0547 67 :NKARKEFGY 1kpf 82 :KKCAADLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84085 # 2a2fX.67.28 read from T0547.t06.many.frag # found chain 2a2fX in template set Warning: unaligning (T0547)Y75 (2a2fX)F37 because L (left) conformation "forbidden" or filtered. T0547 67 :NKARKEFG 2a2fX 29 :REILDKEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=84086 # 1o08A.67.24 read from T0547.t06.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)F73 (1o08A)I1031 because G (3-10) conformation "forbidden" or filtered. T0547 67 :NKARKE 1o08A 1025 :KALAEE T0547 74 :GY 1o08A 1032 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=84088 # 1jftA.67.35 read from T0547.t06.many.frag # found chain 1jftA in template set T0547 67 :NKARKEFGY 1jftA 37 :WAAIKELHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=84089 # 1evlA.67.163 read from T0547.t06.many.frag # found chain 1evlA in training set T0547 67 :NKARKEFGY 1evlA 405 :YDMYSTFGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=84090 # 2al2A.67.228 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 T0547 67 :NKARKE 2al2A 229 :VDAIKA T0547 75 :Y 2al2A 237 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=84092 # 1lvaA.67.75 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 67 :NKARKEFGY 1lvaA 452 :EEFHSRYPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84093 # 1qoyA.67.55 read from T0547.t06.many.frag # found chain 1qoyA in template set Warning: unaligning (T0547)G74 (1qoyA)S48 because G (3-10) conformation "forbidden" or filtered. T0547 67 :NKARKEF 1qoyA 41 :DETIKEL T0547 75 :Y 1qoyA 49 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=84095 # 1h72C.67.64 read from T0547.t06.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)F73 (1h72C)F75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y75 because of BadResidue code BAD_PEPTIDE in next template residue (1h72C)G78 T0547 67 :NKARKE 1h72C 69 :KKMIDD T0547 74 :G 1h72C 76 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=84097 # 1pmi.67.81 read from T0547.t06.many.frag # found chain 1pmi in training set T0547 67 :NKARKEFGY 1pmi 83 :ESIITKFGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=84098 # 2bryA.67.38 read from T0547.t06.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)F73 (2bryA)L37 because G (3-10) conformation "forbidden" or filtered. T0547 67 :NKARKE 2bryA 31 :QGLCRA T0547 74 :GY 2bryA 38 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84100 # 1lqvA.67.80 read from T0547.t06.many.frag # found chain 1lqvA in training set T0547 67 :NKARKEFGY 1lqvA 81 :RLVHQERTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84101 # 2f2gA.67.92 read from T0547.t06.many.frag # found chain 2f2gA in template set T0547 67 :NKARKEFGY 2f2gA 93 :KREGSKWDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=84102 # 2absA.67.50 read from T0547.t06.many.frag # found chain 2absA in training set T0547 67 :NKARKEFGY 2absA 31 :SSFLDEFFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84103 # 1zv1A.67.13 read from T0547.t06.many.frag # found chain 1zv1A in training set T0547 67 :NKARKEFGY 1zv1A 14 :QKLLEKFRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=84104 # 1ru3A.67.43 read from T0547.t06.many.frag # found chain 1ru3A in template set T0547 67 :NKARKEFGY 1ru3A 44 :SRAIEKYGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=84105 # 1j2zA.67.228 read from T0547.t06.many.frag # found chain 1j2zA in template set T0547 67 :NKARKEFGY 1j2zA 229 :KLELEEHAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=84106 # 1dg9A.67.26 read from T0547.t06.many.frag # found chain 1dg9A in template set T0547 67 :NKARKEFGY 1dg9A 27 :RKLVTDQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=84107 # 1jx6A.67.66 read from T0547.t06.many.frag # found chain 1jx6A in training set T0547 67 :NKARKEFGY 1jx6A 90 :EKRLYKLNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=84108 # 1zc6A.67.60 read from T0547.t06.many.frag # found chain 1zc6A in template set T0547 67 :NKARKEFGY 1zc6A 61 :EAAFQQAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84109 # 2cx6A.67.73 read from T0547.t06.many.frag # found chain 2cx6A in template set T0547 67 :NKARKEFGY 2cx6A 74 :DEAEEELEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84110 # 1n5uA.67.50 read from T0547.t06.many.frag # found chain 1n5uA in template set Warning: unaligning (T0547)G74 (1n5uA)S58 because G (3-10) conformation "forbidden" or filtered. T0547 67 :NKARKEF 1n5uA 51 :KTCVADE T0547 75 :Y 1n5uA 59 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=84112 # 1b8oA.67.174 read from T0547.t06.many.frag # found chain 1b8oA in training set T0547 67 :NKARKEFGY 1b8oA 175 :HSTWKQMGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=84113 # 1gudA.67.23 read from T0547.t06.many.frag # found chain 1gudA in training set T0547 67 :NKARKEFGY 1gudA 24 :EDEAKTLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=84114 # 1mk0A.67.75 read from T0547.t06.many.frag # found chain 1mk0A in training set T0547 67 :NKARKEFGY 1mk0A 76 :NFWIKELNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=84115 # 1bouA.67.57 read from T0547.t06.many.frag # found chain 1bouA in template set T0547 67 :NKARKEFGY 1bouA 58 :SAYLDEWNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84116 # 1kpf.68.82 read from T0547.t06.many.frag # found chain 1kpf in training set T0547 68 :KARKEFGYK 1kpf 83 :KCAADLGLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=84117 # 1zwwA.68.52 read from T0547.t06.many.frag # found chain 1zwwA in template set Warning: unaligning (T0547)K76 (1zwwA)N61 because P (beta_P) conformation "forbidden" or filtered. T0547 68 :KARKEFGY 1zwwA 53 :KTIEYLQP Number of specific fragments extracted= 1 number of extra gaps= 1 total=84118 # 1gvnA.68.26 read from T0547.t06.many.frag # found chain 1gvnA in template set Warning: unaligning (T0547)K76 (1gvnA)N35 because P (beta_P) conformation "forbidden" or filtered. T0547 68 :KARKEFGY 1gvnA 27 :NYVLNHEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=84119 # 2al2A.68.229 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 Warning: unaligning (T0547)Y75 (2al2A)H237 because G (3-10) conformation "forbidden" or filtered. T0547 68 :KARKE 2al2A 230 :DAIKA T0547 76 :K 2al2A 238 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=84121 # 1o08A.68.25 read from T0547.t06.many.frag # found chain 1o08A in training set T0547 68 :KARKEFGYK 1o08A 1026 :ALAEEIGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=84122 # 1mj5A.68.90 read from T0547.t06.many.frag # found chain 1mj5A in training set T0547 68 :KARKEFGYK 1mj5A 91 :ALWEALDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84123 # 1h72C.68.65 read from T0547.t06.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)Y75 because of BadResidue code BAD_PEPTIDE in next template residue (1h72C)G78 Warning: unaligning (T0547)K76 because of BadResidue code BAD_PEPTIDE at template residue (1h72C)G78 T0547 68 :KARKEFG 1h72C 70 :KMIDDFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=84124 # 1pmi.68.82 read from T0547.t06.many.frag # found chain 1pmi in training set T0547 68 :KARKEFGYK 1pmi 84 :SIITKFGSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=84125 # 1qoyA.68.56 read from T0547.t06.many.frag # found chain 1qoyA in template set Warning: unaligning (T0547)K76 (1qoyA)F50 because L (left) conformation "forbidden" or filtered. T0547 68 :KARKEFGY 1qoyA 42 :ETIKELSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=84126 # 2a2fX.68.29 read from T0547.t06.many.frag # found chain 2a2fX in template set T0547 68 :KARKEFGYK 2a2fX 30 :EILDKEQFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84127 # 1zv1A.68.14 read from T0547.t06.many.frag # found chain 1zv1A in training set T0547 68 :KARKEFGYK 1zv1A 15 :KLLEKFRYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=84128 # 1jftA.68.36 read from T0547.t06.many.frag # found chain 1jftA in template set T0547 68 :KARKEFGYK 1jftA 38 :AAIKELHYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=84129 # 1evlA.68.164 read from T0547.t06.many.frag # found chain 1evlA in training set T0547 68 :KARKEFGYK 1evlA 406 :DMYSTFGFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=84130 # 1rwhA.68.45 read from T0547.t06.many.frag # found chain 1rwhA in training set T0547 68 :KARKEFGYK 1rwhA 46 :DSLAKLDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=84131 # 2absA.68.51 read from T0547.t06.many.frag # found chain 2absA in training set Warning: unaligning (T0547)K76 (2absA)K40 because P (beta_P) conformation "forbidden" or filtered. T0547 68 :KARKEFGY 2absA 32 :SFLDEFFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=84132 # 2bryA.68.39 read from T0547.t06.many.frag # found chain 2bryA in training set T0547 68 :KARKEFGYK 2bryA 32 :GLCRALGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=84133 # 1dg9A.68.27 read from T0547.t06.many.frag # found chain 1dg9A in template set T0547 68 :KARKEFGYK 1dg9A 28 :KLVTDQNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=84134 # 1zc6A.68.61 read from T0547.t06.many.frag # found chain 1zc6A in template set T0547 68 :KARKEFGYK 1zc6A 62 :AAFQQAGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=84135 # 2f2gA.68.93 read from T0547.t06.many.frag # found chain 2f2gA in template set T0547 68 :KARKEFGYK 2f2gA 94 :REGSKWDVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=84136 # 2btoA.68.125 read from T0547.t06.many.frag # found chain 2btoA in template set T0547 68 :KARKEFGYK 2btoA 126 :YEIDKCDNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=84137 # 2cz1A.68.78 read from T0547.t06.many.frag # found chain 2cz1A in training set Warning: unaligning (T0547)Y75 (2cz1A)Y86 because G (3-10) conformation "forbidden" or filtered. T0547 68 :KARKEFG 2cz1A 79 :AAVAQYG T0547 76 :K 2cz1A 87 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=84139 # 1uekA.68.65 read from T0547.t06.many.frag # found chain 1uekA in training set T0547 68 :KARKEFGYK 1uekA 66 :LYLEAAGQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=84140 # 1j2zA.68.229 read from T0547.t06.many.frag # found chain 1j2zA in template set T0547 68 :KARKEFGYK 1j2zA 230 :LELEEHANN Number of specific fragments extracted= 1 number of extra gaps= 0 total=84141 # 1jx6A.68.67 read from T0547.t06.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)F73 (1jx6A)L96 because G (3-10) conformation "forbidden" or filtered. T0547 68 :KARKE 1jx6A 91 :KRLYK T0547 74 :GYK 1jx6A 97 :NIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=84143 # 1reqB.68.304 read from T0547.t06.many.frag # found chain 1reqB in template set T0547 68 :KARKEFGYK 1reqB 306 :RIGEVFGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=84144 # 1b8oA.68.175 read from T0547.t06.many.frag # found chain 1b8oA in training set T0547 68 :KARKEFGYK 1b8oA 176 :STWKQMGEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=84145 # 1lqvA.68.81 read from T0547.t06.many.frag # found chain 1lqvA in training set T0547 68 :KARKEFGYK 1lqvA 82 :LVHQERTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=84146 # 1ow1A.68.92 read from T0547.t06.many.frag # found chain 1ow1A in training set T0547 68 :KARKEFGYK 1ow1A 3562 :GVARRMTVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=84147 # 1gudA.68.24 read from T0547.t06.many.frag # found chain 1gudA in training set T0547 68 :KARKEFGYK 1gudA 25 :DEAKTLGVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=84148 # 1ru3A.68.44 read from T0547.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)G74 (1ru3A)G51 because S (epsilon) conformation "forbidden" or filtered. T0547 68 :KARKEF 1ru3A 45 :RAIEKY T0547 75 :YK 1ru3A 52 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=84150 # 1kpf.69.83 read from T0547.t06.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)F73 (1kpf)L88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1kpf)K92 because G (3-10) conformation "forbidden" or filtered. T0547 69 :ARKE 1kpf 84 :CAAD T0547 74 :GYK 1kpf 89 :GLN Number of specific fragments extracted= 2 number of extra gaps= 2 total=84152 # 2al2A.69.230 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 Warning: unaligning (T0547)K76 (2al2A)D238 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKE 2al2A 231 :AIKA T0547 75 :Y 2al2A 237 :H T0547 77 :G 2al2A 239 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=84155 # 1h72C.69.66 read from T0547.t06.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)Y75 because of BadResidue code BAD_PEPTIDE in next template residue (1h72C)G78 Warning: unaligning (T0547)K76 because of BadResidue code BAD_PEPTIDE at template residue (1h72C)G78 T0547 69 :ARKEFG 1h72C 71 :MIDDFN T0547 77 :G 1h72C 79 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=84157 # 1pmi.69.83 read from T0547.t06.many.frag # found chain 1pmi in training set T0547 69 :ARKEFGYKG 1pmi 85 :IITKFGSSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=84158 # 1mj5A.69.91 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G77 (1mj5A)D100 because G (3-10) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 1mj5A 92 :LWEALDLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=84159 # 1gvnA.69.27 read from T0547.t06.many.frag # found chain 1gvnA in template set T0547 69 :ARKEFGYKG 1gvnA 28 :YVLNHELNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=84160 # 1zwwA.69.53 read from T0547.t06.many.frag # found chain 1zwwA in template set Warning: unaligning (T0547)G74 (1zwwA)Q59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1zwwA)N61 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEF 1zwwA 54 :TIEYL T0547 75 :Y 1zwwA 60 :P T0547 77 :G 1zwwA 62 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=84163 # 1o08A.69.26 read from T0547.t06.many.frag # found chain 1o08A in training set T0547 69 :ARKEFGYKG 1o08A 1027 :LAEEIGING Number of specific fragments extracted= 1 number of extra gaps= 0 total=84164 # 1jftA.69.37 read from T0547.t06.many.frag # found chain 1jftA in template set T0547 69 :ARKEFGYKG 1jftA 39 :AIKELHYSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=84165 # 2absA.69.52 read from T0547.t06.many.frag # found chain 2absA in training set Warning: unaligning (T0547)G77 (2absA)R41 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 2absA 33 :FLDEFFLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=84166 # 2bryA.69.40 read from T0547.t06.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)G77 (2bryA)S41 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 2bryA 33 :LCRALGVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=84167 # 1dg9A.69.28 read from T0547.t06.many.frag # found chain 1dg9A in template set T0547 69 :ARKEFGYKG 1dg9A 29 :LVTDQNISD Number of specific fragments extracted= 1 number of extra gaps= 0 total=84168 # 1mg7A.69.100 read from T0547.t06.many.frag # found chain 1mg7A in training set T0547 69 :ARKEFGYKG 1mg7A 107 :FIDQLKLHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=84169 # 1zv1A.69.15 read from T0547.t06.many.frag # found chain 1zv1A in training set T0547 69 :ARKEFGYKG 1zv1A 16 :LLEKFRYPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=84170 # 1wrvA.69.84 read from T0547.t06.many.frag # found chain 1wrvA in training set T0547 69 :ARKEFGYKG 1wrvA 85 :VVRRNGYRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=84171 # 1ow1A.69.93 read from T0547.t06.many.frag # found chain 1ow1A in training set T0547 69 :ARKEFGYKG 1ow1A 3563 :VARRMTVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=84172 # 1qoyA.69.57 read from T0547.t06.many.frag # found chain 1qoyA in template set Warning: unaligning (T0547)G74 (1qoyA)S48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1qoyA)F50 because L (left) conformation "forbidden" or filtered. T0547 69 :ARKEF 1qoyA 43 :TIKEL T0547 75 :Y 1qoyA 49 :R T0547 77 :G 1qoyA 51 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=84175 # 1uekA.69.66 read from T0547.t06.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)Y75 (1uekA)Q73 because L (left) conformation "forbidden" or filtered. T0547 69 :ARKEFG 1uekA 67 :YLEAAG T0547 76 :KG 1uekA 74 :PG Number of specific fragments extracted= 2 number of extra gaps= 1 total=84177 # 1ga6A.69.47 read from T0547.t06.many.frag # found chain 1ga6A in training set T0547 69 :ARKEFGYKG 1ga6A 48 :FTSANGLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=84178 # 2a2fX.69.30 read from T0547.t06.many.frag # found chain 2a2fX in template set Warning: unaligning (T0547)Y75 (2a2fX)F37 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (2a2fX)P39 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEFG 2a2fX 31 :ILDKEQ T0547 76 :K 2a2fX 38 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=84180 # 1zc6A.69.62 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)G77 (1zc6A)A71 because P (beta_P) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 1zc6A 63 :AFQQAGLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=84181 # 1evlA.69.165 read from T0547.t06.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)F73 (1evlA)F411 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1evlA)K415 because D (zeta) conformation "forbidden" or filtered. T0547 69 :ARKE 1evlA 407 :MYST T0547 74 :GYK 1evlA 412 :GFE Number of specific fragments extracted= 2 number of extra gaps= 2 total=84183 # 2cz1A.69.79 read from T0547.t06.many.frag # found chain 2cz1A in training set Warning: unaligning (T0547)G77 (2cz1A)G88 because Y (epsilon') conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 2cz1A 80 :AVAQYGYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=84184 # 1b8oA.69.176 read from T0547.t06.many.frag # found chain 1b8oA in training set T0547 69 :ARKEFGYKG 1b8oA 177 :TWKQMGEQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=84185 # 1reqB.69.305 read from T0547.t06.many.frag # found chain 1reqB in template set T0547 69 :ARKEFGYKG 1reqB 307 :IGEVFGVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=84186 1ykdA expands to /projects/compbio/data/pdb/1ykd.pdb.gz 1ykdA:Skipped atom 2457, because occupancy 0.500 <= existing 0.500 in 1ykdA Skipped atom 2459, because occupancy 0.500 <= existing 0.500 in 1ykdA # 1ykdA.69.110 read from T0547.t06.many.frag # adding 1ykdA to template set # found chain 1ykdA in template set Warning: unaligning (T0547)G77 (1ykdA)T176 because E (beta_S) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 1ykdA 168 :QEKITGYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=84187 # 1kqpA.69.5 read from T0547.t06.many.frag # found chain 1kqpA in training set T0547 69 :ARKEFGYKG 1kqpA 6 :IMRELHVKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=84188 # 1gudA.69.25 read from T0547.t06.many.frag # found chain 1gudA in training set Warning: unaligning (T0547)G77 (1gudA)V34 because E (beta_S) conformation "forbidden" or filtered. T0547 69 :ARKEFGYK 1gudA 26 :EAKTLGVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=84189 # 1lqvA.69.82 read from T0547.t06.many.frag # found chain 1lqvA in training set Warning: unaligning (T0547)G74 (1lqvA)T88 because S (epsilon) conformation "forbidden" or filtered. T0547 69 :ARKEF 1lqvA 83 :VHQER T0547 75 :YKG 1lqvA 89 :LAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=84191 # 1x3mA.69.82 read from T0547.t06.many.frag # found chain 1x3mA in template set T0547 69 :ARKEFGYKG 1x3mA 70 :ELEKRDLTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=84192 # 1kpf.70.84 read from T0547.t06.many.frag # found chain 1kpf in training set T0547 70 :RKEFGYKGG 1kpf 85 :AADLGLNKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84193 # 2al2A.70.231 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 Warning: unaligning (T0547)G78 (2al2A)K240 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKE 2al2A 232 :IKA T0547 75 :YKG 2al2A 237 :HDG Number of specific fragments extracted= 2 number of extra gaps= 2 total=84195 # 1h72C.70.67 read from T0547.t06.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)Y75 because of BadResidue code BAD_PEPTIDE in next template residue (1h72C)G78 Warning: unaligning (T0547)K76 because of BadResidue code BAD_PEPTIDE at template residue (1h72C)G78 Warning: unaligning (T0547)G78 (1h72C)G80 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFG 1h72C 72 :IDDFN T0547 77 :G 1h72C 79 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=84197 # 1pmi.70.84 read from T0547.t06.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)F73 (1pmi)F89 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1pmi)K93 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1pmi)E94 because Y (epsilon') conformation "forbidden" or filtered. T0547 70 :RKE 1pmi 86 :ITK T0547 74 :GYK 1pmi 90 :GSS Number of specific fragments extracted= 2 number of extra gaps= 2 total=84199 # 1mj5A.70.92 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)K76 (1mj5A)G99 because S (epsilon) conformation "forbidden" or filtered. T0547 70 :RKEFGY 1mj5A 93 :WEALDL T0547 77 :GG 1mj5A 100 :DR Number of specific fragments extracted= 2 number of extra gaps= 1 total=84201 # 1gvnA.70.28 read from T0547.t06.many.frag # found chain 1gvnA in template set Warning: unaligning (T0547)G78 (1gvnA)N37 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1gvnA 29 :VLNHELNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=84202 # 1zwwA.70.54 read from T0547.t06.many.frag # found chain 1zwwA in template set Warning: unaligning (T0547)G74 (1zwwA)Q59 because D (zeta) conformation "forbidden" or filtered. T0547 70 :RKEF 1zwwA 55 :IEYL T0547 75 :YKGG 1zwwA 60 :PNPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=84204 # 1ow1A.70.94 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)F73 (1ow1A)M3567 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1ow1A)D3572 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKE 1ow1A 3564 :ARR T0547 74 :GYKG 1ow1A 3568 :TVET Number of specific fragments extracted= 2 number of extra gaps= 2 total=84206 # 2absA.70.53 read from T0547.t06.many.frag # found chain 2absA in training set Warning: unaligning (T0547)G77 (2absA)R41 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYK 2absA 34 :LDEFFLK T0547 78 :G 2absA 42 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=84208 # 1dg9A.70.29 read from T0547.t06.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)G78 (1dg9A)N38 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1dg9A 30 :VTDQNISD Number of specific fragments extracted= 1 number of extra gaps= 1 total=84209 # 1uekA.70.67 read from T0547.t06.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)Y75 (1uekA)Q73 because L (left) conformation "forbidden" or filtered. T0547 70 :RKEFG 1uekA 68 :LEAAG T0547 76 :KGG 1uekA 74 :PGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=84211 # 1zv1A.70.16 read from T0547.t06.many.frag # found chain 1zv1A in training set Warning: unaligning (T0547)K76 (1zv1A)P23 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGY 1zv1A 17 :LEKFRY T0547 77 :GG 1zv1A 24 :WE Number of specific fragments extracted= 2 number of extra gaps= 1 total=84213 # 1jftA.70.38 read from T0547.t06.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)G77 (1jftA)P47 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYK 1jftA 40 :IKELHYS T0547 78 :G 1jftA 48 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=84215 # 2bryA.70.41 read from T0547.t06.many.frag # found chain 2bryA in training set T0547 70 :RKEFGYKGG 2bryA 34 :CRALGVESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84216 # 1koe.70.30 read from T0547.t06.many.frag # found chain 1koe in training set T0547 70 :RKEFGYKGG 1koe 168 :ARAVGLSGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=84217 # 1o08A.70.27 read from T0547.t06.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)F73 (1o08A)I1031 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1o08A)G1035 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKE 1o08A 1028 :AEE T0547 74 :GYK 1o08A 1032 :GIN T0547 78 :G 1o08A 1036 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=84220 # 1mg7A.70.101 read from T0547.t06.many.frag # found chain 1mg7A in training set Warning: unaligning (T0547)G78 (1mg7A)V116 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1mg7A 108 :IDQLKLHN Number of specific fragments extracted= 1 number of extra gaps= 1 total=84221 1q8bA expands to /projects/compbio/data/pdb/1q8b.pdb.gz 1q8bA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1q8bA.70.38 read from T0547.t06.many.frag # adding 1q8bA to template set # found chain 1q8bA in template set Warning: unaligning (T0547)G78 (1q8bA)G47 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1q8bA 39 :EEETNKEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=84222 # 1qoyA.70.58 read from T0547.t06.many.frag # found chain 1qoyA in template set T0547 70 :RKEFGYKGG 1qoyA 44 :IKELSRFKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=84223 # 1ykdA.70.111 read from T0547.t06.many.frag # found chain 1ykdA in template set T0547 70 :RKEFGYKGG 1ykdA 169 :EKITGYRTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=84224 # 1b8oA.70.177 read from T0547.t06.many.frag # found chain 1b8oA in training set Warning: unaligning (T0547)G77 (1b8oA)R185 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYK 1b8oA 178 :WKQMGEQ T0547 78 :G 1b8oA 186 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=84226 # 1reqB.70.306 read from T0547.t06.many.frag # found chain 1reqB in template set T0547 70 :RKEFGYKGG 1reqB 308 :GEVFGVDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=84227 # 1kqpA.70.6 read from T0547.t06.many.frag # found chain 1kqpA in training set Warning: unaligning (T0547)F73 (1kqpA)L10 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1kqpA)K13 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKE 1kqpA 7 :MRE T0547 74 :GY 1kqpA 11 :HV T0547 77 :GG 1kqpA 14 :PS Number of specific fragments extracted= 3 number of extra gaps= 2 total=84230 # 2cz1A.70.80 read from T0547.t06.many.frag # found chain 2cz1A in training set Warning: unaligning (T0547)Y75 (2cz1A)Y86 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKEFG 2cz1A 81 :VAQYG T0547 76 :KGG 2cz1A 87 :LGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=84232 # 1jr2A.70.67 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G74 (1jr2A)S51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1jr2A)D55 because G (3-10) conformation "forbidden" or filtered. T0547 70 :RKEF 1jr2A 47 :SEKL T0547 75 :YKG 1jr2A 52 :HPE Number of specific fragments extracted= 2 number of extra gaps= 2 total=84234 # 1fjgI.70.49 read from T0547.t06.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)K76 (1fjgI)L56 because T (delta_L) conformation "forbidden" or filtered. T0547 70 :RKEFGY 1fjgI 50 :LRAVDA T0547 77 :GG 1fjgI 57 :GR Number of specific fragments extracted= 2 number of extra gaps= 1 total=84236 # 1zx5A.70.106 read from T0547.t06.many.frag # found chain 1zx5A in template set Warning: unaligning (T0547)G78 (1zx5A)G114 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1zx5A 106 :AESLGEAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=84237 # 1jx6A.70.69 read from T0547.t06.many.frag # found chain 1jx6A in training set T0547 70 :RKEFGYKGG 1jx6A 93 :LYKLNINYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=84238 # 1t1uA.70.56 read from T0547.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)G78 (1t1uA)G66 because P (beta_P) conformation "forbidden" or filtered. T0547 70 :RKEFGYKG 1t1uA 58 :VKRFGAPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=84239 # 1evlA.70.166 read from T0547.t06.many.frag # found chain 1evlA in training set T0547 70 :RKEFGYKGG 1evlA 408 :YSTFGFEKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=84240 # 2al2A.71.232 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 Warning: unaligning (T0547)Y75 (2al2A)H237 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (2al2A)K240 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KE 2al2A 233 :KA T0547 76 :KG 2al2A 238 :DG T0547 79 :F 2al2A 241 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=84243 # 1kpf.71.85 read from T0547.t06.many.frag # found chain 1kpf in training set T0547 71 :KEFGYKGGF 1kpf 86 :ADLGLNKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=84244 # 1h72C.71.68 read from T0547.t06.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)Y75 because of BadResidue code BAD_PEPTIDE in next template residue (1h72C)G78 Warning: unaligning (T0547)K76 because of BadResidue code BAD_PEPTIDE at template residue (1h72C)G78 T0547 71 :KEFG 1h72C 73 :DDFN T0547 77 :GGF 1h72C 79 :KGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84246 # 1mj5A.71.93 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G77 (1mj5A)D100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1mj5A)R101 because D (zeta) conformation "forbidden" or filtered. T0547 71 :KEFGYK 1mj5A 94 :EALDLG T0547 79 :F 1mj5A 102 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=84248 # 1pmi.71.85 read from T0547.t06.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)F73 (1pmi)F89 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KE 1pmi 87 :TK T0547 74 :GYKGGF 1pmi 90 :GSSKEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84250 # 1dg9A.71.30 read from T0547.t06.many.frag # found chain 1dg9A in template set T0547 71 :KEFGYKGGF 1dg9A 31 :TDQNISDNW Number of specific fragments extracted= 1 number of extra gaps= 0 total=84251 # 1ow1A.71.95 read from T0547.t06.many.frag # found chain 1ow1A in training set T0547 71 :KEFGYKGGF 1ow1A 3565 :RRMTVETDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=84252 # 1uekA.71.68 read from T0547.t06.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)Y75 (1uekA)Q73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1uekA)G76 because P (beta_P) conformation "forbidden" or filtered. T0547 71 :KEFG 1uekA 69 :EAAG T0547 76 :KG 1uekA 74 :PG T0547 79 :F 1uekA 77 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=84255 # 1fjgI.71.50 read from T0547.t06.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)Y75 (1fjgI)A55 because Y (epsilon') conformation "forbidden" or filtered. T0547 71 :KEFG 1fjgI 51 :RAVD T0547 76 :KGGF 1fjgI 56 :LGRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=84257 # 1mg7A.71.102 read from T0547.t06.many.frag # found chain 1mg7A in training set T0547 71 :KEFGYKGGF 1mg7A 109 :DQLKLHNVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=84258 # 1zwwA.71.55 read from T0547.t06.many.frag # found chain 1zwwA in template set T0547 71 :KEFGYKGGF 1zwwA 56 :EYLQPNPAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=84259 # 2absA.71.54 read from T0547.t06.many.frag # found chain 2absA in training set Warning: unaligning (T0547)F73 (2absA)F37 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KE 2absA 35 :DE T0547 74 :GYKGGF 2absA 38 :FLKRGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=84261 # 1gvnA.71.29 read from T0547.t06.many.frag # found chain 1gvnA in template set T0547 71 :KEFGYKGGF 1gvnA 30 :LNHELNKND Number of specific fragments extracted= 1 number of extra gaps= 0 total=84262 # 1koe.71.31 read from T0547.t06.many.frag # found chain 1koe in training set T0547 71 :KEFGYKGGF 1koe 169 :RAVGLSGTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=84263 # 1zv1A.71.17 read from T0547.t06.many.frag # found chain 1zv1A in training set T0547 71 :KEFGYKGGF 1zv1A 18 :EKFRYPWEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84264 # 1x3mA.71.84 read from T0547.t06.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)G78 (1x3mA)S79 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1x3mA 72 :EKRDLTD T0547 79 :F 1x3mA 80 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=84266 # 1q8bA.71.39 read from T0547.t06.many.frag # found chain 1q8bA in template set Warning: unaligning (T0547)G78 (1q8bA)G47 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1q8bA 40 :EETNKEE T0547 79 :F 1q8bA 48 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=84268 # 1wz3A.71.76 read from T0547.t06.many.frag # found chain 1wz3A in training set Warning: unaligning (T0547)G78 (1wz3A)K82 because Y (epsilon') conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1wz3A 75 :NNFGFDG T0547 79 :F 1wz3A 83 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=84270 # 2bryA.71.42 read from T0547.t06.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)G77 (2bryA)S41 because P (beta_P) conformation "forbidden" or filtered. T0547 71 :KEFGYK 2bryA 35 :RALGVE T0547 78 :GF 2bryA 42 :GG Number of specific fragments extracted= 2 number of extra gaps= 1 total=84272 # 1ykdA.71.112 read from T0547.t06.many.frag # found chain 1ykdA in template set T0547 71 :KEFGYKGGF 1ykdA 170 :KITGYRTYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=84273 # 1jr2A.71.68 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G74 (1jr2A)S51 because G (3-10) conformation "forbidden" or filtered. T0547 71 :KEF 1jr2A 48 :EKL T0547 75 :YKGGF 1jr2A 52 :HPEDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=84275 # 1l1eA.71.57 read from T0547.t06.many.frag # found chain 1l1eA in template set T0547 71 :KEFGYKGGF 1l1eA 58 :GKLNLEPGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=84276 # 1kqpA.71.7 read from T0547.t06.many.frag # found chain 1kqpA in training set T0547 71 :KEFGYKGGF 1kqpA 8 :RELHVKPSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=84277 # 1jftA.71.39 read from T0547.t06.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)G77 (1jftA)P47 because P (beta_P) conformation "forbidden" or filtered. T0547 71 :KEFGYK 1jftA 41 :KELHYS T0547 78 :GF 1jftA 48 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=84279 # 1v54C.71.62 read from T0547.t06.many.frag # found chain 1v54C in training set T0547 71 :KEFGYKGGF 1v54C 63 :RESTFQGHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=84280 # 1eu1A.71.101 read from T0547.t06.many.frag # found chain 1eu1A in training set Warning: unaligning (T0547)G78 (1eu1A)T109 because E (beta_S) conformation "forbidden" or filtered. T0547 71 :KEFGYKG 1eu1A 102 :ESYGPTG T0547 79 :F 1eu1A 110 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=84282 # 1jx6A.71.70 read from T0547.t06.many.frag # found chain 1jx6A in training set T0547 71 :KEFGYKGGF 1jx6A 94 :YKLNINYQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84283 # 1o08A.71.28 read from T0547.t06.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)G77 (1o08A)G1035 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1o08A)V1036 because N (gamma') conformation "forbidden" or filtered. T0547 71 :KEFGYK 1o08A 1029 :EEIGIN T0547 79 :F 1o08A 1037 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=84285 # 2aeuA.71.68 read from T0547.t06.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)K76 (2aeuA)D74 because E (beta_S) conformation "forbidden" or filtered. T0547 71 :KEFGY 2aeuA 69 :KHLGG T0547 77 :GGF 2aeuA 75 :END Number of specific fragments extracted= 2 number of extra gaps= 1 total=84287 # 1w23A.71.58 read from T0547.t06.many.frag # found chain 1w23A in training set T0547 71 :KEFGYKGGF 1w23A 59 :ELLQIPNDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=84288 # 2al2A.72.233 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 T0547 72 :E 2al2A 234 :A T0547 75 :YKGGFN 2al2A 237 :HDGKVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=84290 # 1kpf.72.86 read from T0547.t06.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)G77 (1kpf)K92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1kpf)G93 because S (epsilon) conformation "forbidden" or filtered. T0547 72 :EFGYK 1kpf 87 :DLGLN T0547 79 :FN 1kpf 94 :YR Number of specific fragments extracted= 2 number of extra gaps= 1 total=84292 # 1ow1A.72.96 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)F79 (1ow1A)Y3573 because Y (epsilon') conformation "forbidden" or filtered. T0547 72 :EFGYKGG 1ow1A 3566 :RMTVETD T0547 80 :N 1ow1A 3574 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=84294 # 1h72C.72.69 read from T0547.t06.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)Y75 because of BadResidue code BAD_PEPTIDE in next template residue (1h72C)G78 Warning: unaligning (T0547)K76 because of BadResidue code BAD_PEPTIDE at template residue (1h72C)G78 T0547 72 :EFG 1h72C 74 :DFN T0547 77 :GGFN 1h72C 79 :KGVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=84296 # 1dg9A.72.31 read from T0547.t06.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)G78 (1dg9A)N38 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFGYKG 1dg9A 32 :DQNISD T0547 79 :FN 1dg9A 39 :WV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84298 # 1fjgI.72.51 read from T0547.t06.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)K76 (1fjgI)L56 because T (delta_L) conformation "forbidden" or filtered. T0547 72 :EFGY 1fjgI 52 :AVDA T0547 77 :GGFN 1fjgI 57 :GRFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=84300 # 1mj5A.72.94 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)K76 (1mj5A)G99 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1mj5A)R101 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1mj5A)V103 because E (beta_S) conformation "forbidden" or filtered. T0547 72 :EFGY 1mj5A 95 :ALDL T0547 77 :G 1mj5A 100 :D T0547 79 :F 1mj5A 102 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=84303 # 1x3mA.72.85 read from T0547.t06.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)G78 (1x3mA)S79 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFGYKG 1x3mA 73 :KRDLTD T0547 79 :FN 1x3mA 80 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=84305 # 1uekA.72.69 read from T0547.t06.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)Y75 (1uekA)Q73 because L (left) conformation "forbidden" or filtered. T0547 72 :EFG 1uekA 70 :AAG T0547 76 :KGGFN 1uekA 74 :PGGVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=84307 # 1wz3A.72.77 read from T0547.t06.many.frag # found chain 1wz3A in training set Warning: unaligning (T0547)F73 (1wz3A)F77 because G (3-10) conformation "forbidden" or filtered. T0547 72 :E 1wz3A 76 :N T0547 74 :GYKGGFN 1wz3A 78 :GFDGKLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84309 # 2absA.72.55 read from T0547.t06.many.frag # found chain 2absA in training set Warning: unaligning (T0547)K76 (2absA)K40 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (2absA)R41 because P (beta_P) conformation "forbidden" or filtered. T0547 72 :EFGY 2absA 36 :EFFL T0547 78 :GFN 2absA 42 :GDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=84311 # 1pmi.72.86 read from T0547.t06.many.frag # found chain 1pmi in training set T0547 72 :EFGYKGGFN 1pmi 88 :KFGSSKELP Number of specific fragments extracted= 1 number of extra gaps= 0 total=84312 # 1w23A.72.59 read from T0547.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)F73 (1w23A)L61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1w23A)D66 because G (3-10) conformation "forbidden" or filtered. T0547 72 :E 1w23A 60 :L T0547 74 :GYKG 1w23A 62 :QIPN T0547 79 :FN 1w23A 67 :YQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=84315 # 1koe.72.32 read from T0547.t06.many.frag # found chain 1koe in training set Warning: unaligning (T0547)G78 (1koe)T176 because N (gamma') conformation "forbidden" or filtered. T0547 72 :EFGYKG 1koe 170 :AVGLSG T0547 79 :FN 1koe 177 :FR Number of specific fragments extracted= 2 number of extra gaps= 1 total=84317 # 1q8bA.72.40 read from T0547.t06.many.frag # found chain 1q8bA in template set T0547 72 :EFGYKGGFN 1q8bA 41 :ETNKEEGCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=84318 # 1mg7A.72.103 read from T0547.t06.many.frag # found chain 1mg7A in training set T0547 72 :EFGYKGGFN 1mg7A 110 :QLKLHNVYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=84319 # 1zwwA.72.56 read from T0547.t06.many.frag # found chain 1zwwA in template set Warning: unaligning (T0547)G74 (1zwwA)Q59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1zwwA)N61 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zwwA)P87 T0547 72 :EF 1zwwA 57 :YL T0547 75 :Y 1zwwA 60 :P T0547 77 :GGF 1zwwA 62 :PAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=84322 # 1wu7A.72.150 read from T0547.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G78 (1wu7A)I157 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFGYKG 1wu7A 151 :RLGLQD T0547 79 :FN 1wu7A 158 :YE Number of specific fragments extracted= 2 number of extra gaps= 1 total=84324 # 1l1eA.72.58 read from T0547.t06.many.frag # found chain 1l1eA in template set Warning: unaligning (T0547)F73 (1l1eA)L60 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1l1eA)T67 because E (beta_S) conformation "forbidden" or filtered. T0547 72 :E 1l1eA 59 :K T0547 74 :GYKGGF 1l1eA 61 :NLEPGM Number of specific fragments extracted= 2 number of extra gaps= 2 total=84326 # 1ykdA.72.113 read from T0547.t06.many.frag # found chain 1ykdA in template set Warning: unaligning (T0547)K76 (1ykdA)R175 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1ykdA)T176 because E (beta_S) conformation "forbidden" or filtered. T0547 72 :EFGY 1ykdA 171 :ITGY T0547 78 :GFN 1ykdA 177 :YTM Number of specific fragments extracted= 2 number of extra gaps= 1 total=84328 # 1uarA.72.72 read from T0547.t06.many.frag # found chain 1uarA in training set T0547 72 :EFGYKGGFN 1uarA 73 :RLGISNDTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=84329 # 1qwnA.72.116 read from T0547.t06.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G78 (1qwnA)E123 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFGYKG 1qwnA 117 :HLHDNP T0547 79 :FN 1qwnA 124 :MK Number of specific fragments extracted= 2 number of extra gaps= 1 total=84331 # 1pg4A.72.125 read from T0547.t06.many.frag # found chain 1pg4A in training set T0547 72 :EFGYKGGFN 1pg4A 126 :DLGIKKGDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=84332 # 2aeuA.72.69 read from T0547.t06.many.frag # found chain 2aeuA in training set T0547 72 :EFGYKGGFN 2aeuA 70 :HLGGDENDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=84333 # 1jr2A.72.69 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G78 (1jr2A)D55 because G (3-10) conformation "forbidden" or filtered. T0547 72 :EFGYKG 1jr2A 49 :KLSHPE T0547 79 :FN 1jr2A 56 :YG Number of specific fragments extracted= 2 number of extra gaps= 1 total=84335 # 1yt8A.72.84 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 72 :EFGYKGGFN 1yt8A 85 :DLGYSDVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84336 # 2btoA.72.129 read from T0547.t06.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)K76 (2btoA)V134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (2btoA)G136 because Y (epsilon') conformation "forbidden" or filtered. T0547 72 :EFGY 2btoA 130 :KCDN T0547 77 :G 2btoA 135 :G T0547 79 :FN 2btoA 137 :II Number of specific fragments extracted= 3 number of extra gaps= 2 total=84339 # 1gvnA.72.30 read from T0547.t06.many.frag # found chain 1gvnA in template set Warning: unaligning (T0547)F73 (1gvnA)H32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1gvnA)N35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1gvnA)N37 because G (3-10) conformation "forbidden" or filtered. T0547 72 :E 1gvnA 31 :N T0547 74 :GY 1gvnA 33 :EL T0547 77 :G 1gvnA 36 :K T0547 79 :FN 1gvnA 38 :DS Number of specific fragments extracted= 4 number of extra gaps= 3 total=84343 # 2bwfA.72.60 read from T0547.t06.many.frag # found chain 2bwfA in training set Warning: unaligning (T0547)F73 (2bwfA)Y60 because G (3-10) conformation "forbidden" or filtered. T0547 72 :E 2bwfA 59 :S T0547 74 :GYKGGFN 2bwfA 61 :HIQDGHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=84345 # 1zv1A.72.18 read from T0547.t06.many.frag # found chain 1zv1A in training set T0547 72 :EFGYKGGFN 1zv1A 19 :KFRYPWELM Number of specific fragments extracted= 1 number of extra gaps= 0 total=84346 # 2al2A.73.234 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)F73 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)G236 Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 T0547 75 :YKGGFNA 2al2A 237 :HDGKVKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=84347 # 1ow1A.73.97 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)F73 (1ow1A)M3567 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKGGFNA 1ow1A 3568 :TVETDYCL Number of specific fragments extracted= 1 number of extra gaps= 1 total=84348 # 1kpf.73.87 read from T0547.t06.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)G77 (1kpf)K92 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FGYK 1kpf 88 :LGLN T0547 78 :GFNA 1kpf 93 :GYRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=84350 # 1dg9A.73.32 read from T0547.t06.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)G78 (1dg9A)N38 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FGYKG 1dg9A 33 :QNISD T0547 79 :FNA 1dg9A 39 :WVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=84352 # 1x3mA.73.86 read from T0547.t06.many.frag # found chain 1x3mA in template set Warning: unaligning (T0547)G78 (1x3mA)S79 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FGYKG 1x3mA 74 :RDLTD T0547 79 :FNA 1x3mA 80 :VAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84354 # 1fjgI.73.52 read from T0547.t06.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)K76 (1fjgI)L56 because T (delta_L) conformation "forbidden" or filtered. T0547 73 :FGY 1fjgI 53 :VDA T0547 77 :GGFNA 1fjgI 57 :GRFDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=84356 # 1uekA.73.70 read from T0547.t06.many.frag # found chain 1uekA in training set Warning: unaligning (T0547)Y75 (1uekA)Q73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1uekA)G75 because Y (epsilon') conformation "forbidden" or filtered. T0547 73 :FG 1uekA 71 :AG T0547 76 :K 1uekA 74 :P T0547 78 :GFNA 1uekA 76 :GVRI Number of specific fragments extracted= 3 number of extra gaps= 2 total=84359 # 1h72C.73.70 read from T0547.t06.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)Y75 because of BadResidue code BAD_PEPTIDE in next template residue (1h72C)G78 Warning: unaligning (T0547)K76 because of BadResidue code BAD_PEPTIDE at template residue (1h72C)G78 T0547 73 :FG 1h72C 75 :FN T0547 77 :GGFNA 1h72C 79 :KGVKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=84361 # 1mj5A.73.95 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G77 (1mj5A)D100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1mj5A)R101 because D (zeta) conformation "forbidden" or filtered. T0547 73 :FGYK 1mj5A 96 :LDLG T0547 79 :FNA 1mj5A 102 :VVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84363 # 1w23A.73.60 read from T0547.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)G78 (1w23A)D66 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FGYKG 1w23A 61 :LQIPN T0547 79 :FNA 1w23A 67 :YQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=84365 # 2btoA.73.130 read from T0547.t06.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)G78 (2btoA)G136 because Y (epsilon') conformation "forbidden" or filtered. T0547 73 :FGYKG 2btoA 131 :CDNVG T0547 79 :FNA 2btoA 137 :IIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84367 # 2absA.73.56 read from T0547.t06.many.frag # found chain 2absA in training set Warning: unaligning (T0547)G77 (2absA)R41 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :FGYK 2absA 37 :FFLK T0547 78 :GFNA 2absA 42 :GDAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=84369 # 1pmi.73.87 read from T0547.t06.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)G78 (1pmi)E94 because Y (epsilon') conformation "forbidden" or filtered. T0547 73 :FGYKG 1pmi 89 :FGSSK T0547 79 :FNA 1pmi 95 :LPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=84371 # 1wz3A.73.78 read from T0547.t06.many.frag # found chain 1wz3A in training set Warning: unaligning (T0547)N80 (1wz3A)V84 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :FGYKGGF 1wz3A 77 :FGFDGKL T0547 81 :A 1wz3A 85 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=84373 # 1qwnA.73.117 read from T0547.t06.many.frag # found chain 1qwnA in training set T0547 73 :FGYKGGFNA 1qwnA 118 :LHDNPEMKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=84374 # 1q8bA.73.41 read from T0547.t06.many.frag # found chain 1q8bA in template set Warning: unaligning (T0547)K76 (1q8bA)E45 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :FGY 1q8bA 42 :TNK T0547 77 :GGFNA 1q8bA 46 :EGCIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=84376 # 1uarA.73.17 read from T0547.t06.many.frag # found chain 1uarA in training set T0547 73 :FGYKGGFNA 1uarA 18 :HLEDPKVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=84377 # 1v4vA.73.27 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)G77 (1v4vA)P32 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :FGYK 1v4vA 28 :LRGI T0547 78 :GFNA 1v4vA 33 :GLKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=84379 # 1xeaA.73.21 read from T0547.t06.many.frag # found chain 1xeaA in template set T0547 73 :FGYKGGFNA 1xeaA 22 :LAQWPDIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84380 # 1wu7A.73.151 read from T0547.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)G78 (1wu7A)I157 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FGYKG 1wu7A 152 :LGLQD T0547 79 :FNA 1wu7A 158 :YEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=84382 # 1koe.73.33 read from T0547.t06.many.frag # found chain 1koe in training set Warning: unaligning (T0547)G78 (1koe)T176 because N (gamma') conformation "forbidden" or filtered. T0547 73 :FGYKG 1koe 171 :VGLSG T0547 79 :FNA 1koe 177 :FRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=84384 # 1l1eA.73.59 read from T0547.t06.many.frag # found chain 1l1eA in template set Warning: unaligning (T0547)N80 (1l1eA)T67 because E (beta_S) conformation "forbidden" or filtered. T0547 73 :FGYKGGF 1l1eA 60 :LNLEPGM T0547 81 :A 1l1eA 68 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=84386 # 1t0hB.73.53 read from T0547.t06.many.frag # found chain 1t0hB in template set Warning: unaligning (T0547)Y75 (1t0hB)F257 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FG 1t0hB 255 :HR T0547 76 :KGGFNA 1t0hB 258 :EGRISI Number of specific fragments extracted= 2 number of extra gaps= 1 total=84388 # 1dqzA.73.55 read from T0547.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)G74 (1dqzA)Y59 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1dqzA)Q61 because L (left) conformation "forbidden" or filtered. T0547 73 :F 1dqzA 58 :E T0547 75 :Y 1dqzA 60 :Y T0547 77 :GGFNA 1dqzA 62 :SGLSV Number of specific fragments extracted= 3 number of extra gaps= 2 total=84391 # 1lqtA.73.69 read from T0547.t06.many.frag # found chain 1lqtA in training set T0547 73 :FGYKGGFNA 1lqtA 70 :TAEDPRFRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=84392 # 2bwfA.73.61 read from T0547.t06.many.frag # found chain 2bwfA in training set Warning: unaligning (T0547)N80 (2bwfA)S67 because E (beta_S) conformation "forbidden" or filtered. T0547 73 :FGYKGGF 2bwfA 60 :YHIQDGH T0547 81 :A 2bwfA 68 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=84394 # 1sg6A.73.65 read from T0547.t06.many.frag # found chain 1sg6A in training set Warning: unaligning (T0547)Y75 (1sg6A)P68 because C (cis) conformation "forbidden" or filtered. T0547 73 :FG 1sg6A 66 :IT T0547 76 :KGGFNA 1sg6A 69 :SPRLLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=84396 # 1vefA.73.97 read from T0547.t06.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)K76 (1vefA)P101 because P (beta_P) conformation "forbidden" or filtered. T0547 73 :FGY 1vefA 98 :AIL T0547 77 :GGFNA 1vefA 102 :PELNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=84398 # 1vd6A.73.88 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)K76 (1vd6A)F92 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1vd6A)Q94 because G (3-10) conformation "forbidden" or filtered. T0547 73 :FGY 1vd6A 89 :KEA T0547 77 :G 1vd6A 93 :P T0547 79 :FNA 1vd6A 95 :AVF Number of specific fragments extracted= 3 number of extra gaps= 2 total=84401 # 1h6dA.73.102 read from T0547.t06.many.frag # found chain 1h6dA in template set Warning: unaligning (T0547)N80 (1h6dA)R110 because Y (epsilon') conformation "forbidden" or filtered. T0547 73 :FGYKGGF 1h6dA 103 :FAGCQHS T0547 81 :A 1h6dA 111 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=84403 # 1ow1A.74.98 read from T0547.t06.many.frag # found chain 1ow1A in training set T0547 74 :GYKGGFNAV 1ow1A 3568 :TVETDYCLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84404 # 2al2A.74.235 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)G74 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)G236 Warning: unaligning (T0547)Y75 (2al2A)H237 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (2al2A)K240 because G (3-10) conformation "forbidden" or filtered. T0547 76 :KG 2al2A 238 :DG T0547 79 :FNAV 2al2A 241 :VKIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=84406 # 1kpf.74.88 read from T0547.t06.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)G77 (1kpf)K92 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYK 1kpf 89 :GLN T0547 78 :GFNAV 1kpf 93 :GYRMV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84408 # 1fjgI.74.53 read from T0547.t06.many.frag # found chain 1fjgI in template set T0547 74 :GYKGGFNAV 1fjgI 54 :DALGRFDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=84409 # 1x3mA.74.87 read from T0547.t06.many.frag # found chain 1x3mA in template set T0547 74 :GYKGGFNAV 1x3mA 75 :DLTDSVALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=84410 # 1mj5A.74.96 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G77 (1mj5A)D100 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYK 1mj5A 97 :DLG T0547 78 :GFNAV 1mj5A 101 :RVVLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84412 # 1w23A.74.61 read from T0547.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)G78 (1w23A)D66 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKG 1w23A 62 :QIPN T0547 79 :FNAV 1w23A 67 :YQIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84414 # 1dg9A.74.33 read from T0547.t06.many.frag # found chain 1dg9A in template set T0547 74 :GYKGGFNAV 1dg9A 34 :NISDNWVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=84415 # 1uekA.74.71 read from T0547.t06.many.frag # found chain 1uekA in training set T0547 74 :GYKGGFNAV 1uekA 72 :GQPGGVRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84416 # 2btoA.74.131 read from T0547.t06.many.frag # found chain 2btoA in template set T0547 74 :GYKGGFNAV 2btoA 132 :DNVGGIIVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84417 # 1v4vA.74.28 read from T0547.t06.many.frag # found chain 1v4vA in training set T0547 74 :GYKGGFNAV 1v4vA 29 :RGIPGLKPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84418 # 1dqzA.74.56 read from T0547.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)K76 (1dqzA)Q61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1dqzA)S65 because P (beta_P) conformation "forbidden" or filtered. T0547 74 :GY 1dqzA 59 :YY T0547 77 :GGF 1dqzA 62 :SGL T0547 81 :AV 1dqzA 66 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=84421 # 1vd6A.74.89 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 74 :GYKGGFNAV 1vd6A 90 :EAFPQAVFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=84422 # 1l1eA.74.60 read from T0547.t06.many.frag # found chain 1l1eA in template set Warning: unaligning (T0547)N80 (1l1eA)T67 because E (beta_S) conformation "forbidden" or filtered. T0547 74 :GYKGGF 1l1eA 61 :NLEPGM T0547 81 :AV 1l1eA 68 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84424 # 1uarA.74.18 read from T0547.t06.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)G78 (1uarA)K23 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKG 1uarA 19 :LEDP T0547 79 :FNAV 1uarA 24 :VRVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84426 # 1h72C.74.71 read from T0547.t06.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)Y75 because of BadResidue code BAD_PEPTIDE in next template residue (1h72C)G78 Warning: unaligning (T0547)K76 because of BadResidue code BAD_PEPTIDE at template residue (1h72C)G78 T0547 74 :G 1h72C 76 :N T0547 77 :GGFNAV 1h72C 79 :KGVKIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=84428 # 1wu7A.74.152 read from T0547.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)N80 (1wu7A)E159 because E (beta_S) conformation "forbidden" or filtered. T0547 74 :GYKGGF 1wu7A 153 :GLQDIY T0547 81 :AV 1wu7A 160 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=84430 # 1o97D.74.28 read from T0547.t06.many.frag # found chain 1o97D in training set T0547 74 :GYKGGFNAV 1o97D 29 :KKSGEDKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=84431 # 1wz3A.74.79 read from T0547.t06.many.frag # found chain 1wz3A in training set Warning: unaligning (T0547)K76 (1wz3A)D80 because L (left) conformation "forbidden" or filtered. T0547 74 :GY 1wz3A 78 :GF T0547 77 :GGFNAV 1wz3A 81 :GKLVVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=84433 # 1qwnA.74.118 read from T0547.t06.many.frag # found chain 1qwnA in training set T0547 74 :GYKGGFNAV 1qwnA 119 :HDNPEMKFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=84434 # 1t0hB.74.54 read from T0547.t06.many.frag # found chain 1t0hB in template set Warning: unaligning (T0547)G78 (1t0hB)R260 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKG 1t0hB 256 :RFEG T0547 79 :FNAV 1t0hB 261 :ISIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=84436 # 1xccA.74.27 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)W33 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)W33 T0547 74 :GYKG 1xccA 28 :YIEN T0547 80 :NAV 1xccA 34 :AIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84438 # 1itxA.74.117 read from T0547.t06.many.frag # found chain 1itxA in training set Warning: unaligning (T0547)K76 (1itxA)N152 because D (zeta) conformation "forbidden" or filtered. T0547 74 :GY 1itxA 150 :QT T0547 77 :GGFNAV 1itxA 153 :PNLKTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=84440 # 1i1wA.74.117 read from T0547.t06.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)G78 (1i1wA)K122 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKG 1i1wA 118 :RYKG T0547 79 :FNAV 1i1wA 123 :IRAW Number of specific fragments extracted= 2 number of extra gaps= 1 total=84442 # 1vefA.74.98 read from T0547.t06.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)N80 (1vefA)N105 because G (3-10) conformation "forbidden" or filtered. T0547 74 :GYKGGF 1vefA 99 :ILPPEL T0547 81 :AV 1vefA 106 :RV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84444 # 1q8bA.74.42 read from T0547.t06.many.frag # found chain 1q8bA in template set T0547 74 :GYKGGFNAV 1q8bA 43 :NKEEGCITF Number of specific fragments extracted= 1 number of extra gaps= 0 total=84445 # 1xeaA.74.22 read from T0547.t06.many.frag # found chain 1xeaA in template set Warning: unaligning (T0547)K76 (1xeaA)W25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1xeaA)P26 because P (beta_P) conformation "forbidden" or filtered. T0547 74 :GY 1xeaA 23 :AQ T0547 78 :GFNAV 1xeaA 27 :DIELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84447 # 1pmi.74.88 read from T0547.t06.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)G78 (1pmi)E94 because Y (epsilon') conformation "forbidden" or filtered. T0547 74 :GYKG 1pmi 90 :GSSK T0547 79 :FNAV 1pmi 95 :LPFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84449 # 2a5yB.74.148 read from T0547.t06.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)G77 (2a5yB)S152 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (2a5yB)F153 because Y (epsilon') conformation "forbidden" or filtered. T0547 74 :GYK 2a5yB 149 :DLD T0547 79 :FNAV 2a5yB 154 :FLFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84451 # 1ej0A.74.18 read from T0547.t06.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)G77 (1ej0A)P51 because P (beta_P) conformation "forbidden" or filtered. T0547 74 :GYK 1ej0A 48 :LFK T0547 78 :GFNAV 1ej0A 52 :GMTVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84453 # 1ow1A.75.99 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)G78 (1ow1A)D3572 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKG 1ow1A 3569 :VET T0547 79 :FNAVY 1ow1A 3573 :YCLLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84455 # 1dqzA.75.57 read from T0547.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)K76 (1dqzA)Q61 because L (left) conformation "forbidden" or filtered. T0547 75 :Y 1dqzA 60 :Y T0547 77 :GGFNAVY 1dqzA 62 :SGLSVIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=84457 # 2al2A.75.236 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)G78 (2al2A)K240 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y83 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)D246 T0547 75 :YKG 2al2A 237 :HDG T0547 79 :FNAV 2al2A 241 :VKIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=84459 # 1o97D.75.29 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)G77 (1o97D)G32 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1o97D)K35 because E (beta_S) conformation "forbidden" or filtered. T0547 75 :YK 1o97D 30 :KS T0547 78 :GF 1o97D 33 :ED T0547 81 :AVY 1o97D 36 :VVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=84462 # 1xccA.75.28 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)W33 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)W33 T0547 75 :YKG 1xccA 29 :IEN T0547 80 :NAVY 1xccA 34 :AILF Number of specific fragments extracted= 2 number of extra gaps= 1 total=84464 # 1w23A.75.62 read from T0547.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0547)G78 (1w23A)D66 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKG 1w23A 63 :IPN T0547 79 :FNAVY 1w23A 67 :YQILF Number of specific fragments extracted= 2 number of extra gaps= 1 total=84466 # 1o8xA.75.24 read from T0547.t06.many.frag # found chain 1o8xA in training set Warning: unaligning (T0547)G77 (1o8xA)A27 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE in next template residue (1o8xA)L30 Warning: unaligning (T0547)N80 because of BadResidue code BAD_PEPTIDE at template residue (1o8xA)L30 T0547 75 :YK 1o8xA 25 :SL T0547 78 :G 1o8xA 28 :G T0547 81 :AVY 1o8xA 31 :VFF Number of specific fragments extracted= 3 number of extra gaps= 2 total=84469 # 1zdyA.75.41 read from T0547.t06.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)K76 (1zdyA)E43 because P (beta_P) conformation "forbidden" or filtered. T0547 75 :Y 1zdyA 42 :V T0547 77 :GGFNAVY 1zdyA 44 :GGSVVVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=84471 # 1pjr.75.21 read from T0547.t06.many.frag # found chain 1pjr in template set T0547 75 :YKGGFNAVY 1pjr 22 :TTEGPLLIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=84472 # 1fjgI.75.54 read from T0547.t06.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)Y75 (1fjgI)A55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K76 (1fjgI)L56 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G77 (1fjgI)G57 because H (helix) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1fjgI 58 :RFDAYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=84473 # 1x3mA.75.88 read from T0547.t06.many.frag # found chain 1x3mA in template set T0547 75 :YKGGFNAVY 1x3mA 76 :LTDSVALIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84474 # 1n55A.75.33 read from T0547.t06.many.frag # found chain 1n55A in training set T0547 75 :YKGGFNAVY 1n55A 33 :ISHDVQCVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=84475 # 2bhuA.75.72 read from T0547.t06.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)A81 (2bhuA)Y79 because Y (epsilon') conformation "forbidden" or filtered. T0547 75 :YKGGFN 2bhuA 73 :VGPGAR T0547 82 :VY 2bhuA 80 :LF Number of specific fragments extracted= 2 number of extra gaps= 1 total=84477 # 1itxA.75.118 read from T0547.t06.many.frag # found chain 1itxA in training set T0547 75 :YKGGFNAVY 1itxA 151 :TNPNLKTII Number of specific fragments extracted= 1 number of extra gaps= 0 total=84478 # 1qwnA.75.119 read from T0547.t06.many.frag # found chain 1qwnA in training set T0547 75 :YKGGFNAVY 1qwnA 120 :DNPEMKFIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=84479 # 1mj5A.75.97 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G77 (1mj5A)D100 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YK 1mj5A 98 :LG T0547 78 :GFNAVY 1mj5A 101 :RVVLVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84481 # 1v4vA.75.29 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)N80 (1v4vA)K35 because E (beta_S) conformation "forbidden" or filtered. T0547 75 :YKGGF 1v4vA 30 :GIPGL T0547 81 :AVY 1v4vA 36 :PLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84483 # 1g8kA.75.290 read from T0547.t06.many.frag # found chain 1g8kA in training set T0547 75 :YKGGFNAVY 1g8kA 291 :AGNDRVLHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84484 # 1i1wA.75.118 read from T0547.t06.many.frag # found chain 1i1wA in training set Warning: unaligning (T0547)G78 (1i1wA)K122 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKG 1i1wA 119 :YKG T0547 79 :FNAVY 1i1wA 123 :IRAWD Number of specific fragments extracted= 2 number of extra gaps= 1 total=84486 # 1bjt.75.55 read from T0547.t06.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)K76 (1bjt)G465 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1bjt)G470 because E (beta_S) conformation "forbidden" or filtered. T0547 75 :Y 1bjt 464 :V T0547 77 :GGFN 1bjt 466 :RDYY T0547 82 :VY 1bjt 471 :CY Number of specific fragments extracted= 3 number of extra gaps= 2 total=84489 # 1vd6A.75.90 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)A81 (1vd6A)F97 because E (beta_S) conformation "forbidden" or filtered. T0547 75 :YKGGFN 1vd6A 91 :AFPQAV T0547 82 :VY 1vd6A 98 :NV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84491 # 1kyqA.75.32 read from T0547.t06.many.frag # found chain 1kyqA in template set T0547 75 :YKGGFNAVY 1kyqA 33 :MPTGCKLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84492 # 7odcA.75.57 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K76 (7odcA)L59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (7odcA)T63 because P (beta_P) conformation "forbidden" or filtered. T0547 75 :Y 7odcA 58 :A T0547 77 :GGF 7odcA 60 :PRV T0547 81 :AVY 7odcA 64 :PFY Number of specific fragments extracted= 3 number of extra gaps= 2 total=84495 # 1ej0A.75.19 read from T0547.t06.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)G77 (1ej0A)P51 because P (beta_P) conformation "forbidden" or filtered. T0547 75 :YK 1ej0A 49 :FK T0547 78 :GFNAVY 1ej0A 52 :GMTVVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=84497 # 1w8sA.75.12 read from T0547.t06.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)G77 (1w8sA)R15 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YK 1w8sA 13 :AR T0547 78 :GFNAVY 1w8sA 16 :GKSIIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84499 # 1nar.75.73 read from T0547.t06.many.frag # found chain 1nar in training set T0547 75 :YKGGFNAVY 1nar 74 :RHPEVKVVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=84500 # 1uarA.75.19 read from T0547.t06.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)G78 (1uarA)K23 because G (3-10) conformation "forbidden" or filtered. T0547 75 :YKG 1uarA 20 :EDP T0547 79 :FNAVY 1uarA 24 :VRVLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=84502 # 1kpf.75.89 read from T0547.t06.many.frag # found chain 1kpf in training set Warning: unaligning (T0547)G77 (1kpf)K92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1kpf)G93 because S (epsilon) conformation "forbidden" or filtered. T0547 75 :YK 1kpf 90 :LN T0547 79 :FNAVY 1kpf 94 :YRMVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84504 # 1yt3A.75.70 read from T0547.t06.many.frag # found chain 1yt3A in training set Warning: unaligning (T0547)G78 (1yt3A)S74 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1yt3A)T76 because P (beta_P) conformation "forbidden" or filtered. T0547 75 :YKG 1yt3A 71 :RDP T0547 79 :F 1yt3A 75 :I T0547 81 :AVY 1yt3A 77 :KFL Number of specific fragments extracted= 3 number of extra gaps= 2 total=84507 # 1q7zA.75.95 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 75 :YKGGFNAVY 1q7zA 96 :AAGEKLVFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84508 # 1ow1A.76.100 read from T0547.t06.many.frag # found chain 1ow1A in training set T0547 76 :KGGFNAVYP 1ow1A 3570 :ETDYCLLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=84509 # 7odcA.76.58 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G78 (7odcA)R61 because G (3-10) conformation "forbidden" or filtered. T0547 76 :KG 7odcA 59 :LP T0547 79 :FNAVYP 7odcA 62 :VTPFYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=84511 # 1o97D.76.30 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)P84 (1o97D)A39 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 1o97D 31 :SGEDKVVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=84512 # 1dqzA.76.58 read from T0547.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)K76 (1dqzA)Q61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1dqzA)S65 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1dqzA)V66 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGF 1dqzA 62 :SGL T0547 82 :VYP 1dqzA 67 :IMP Number of specific fragments extracted= 2 number of extra gaps= 2 total=84514 # 1o8xA.76.25 read from T0547.t06.many.frag # found chain 1o8xA in training set Warning: unaligning (T0547)G77 (1o8xA)A27 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE in next template residue (1o8xA)L30 Warning: unaligning (T0547)N80 because of BadResidue code BAD_PEPTIDE at template residue (1o8xA)L30 T0547 76 :K 1o8xA 26 :L T0547 78 :G 1o8xA 28 :G T0547 81 :AVYP 1o8xA 31 :VFFY Number of specific fragments extracted= 3 number of extra gaps= 2 total=84517 # 1bjt.76.56 read from T0547.t06.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)K76 (1bjt)G465 because S (epsilon) conformation "forbidden" or filtered. T0547 77 :GGFNAVYP 1bjt 466 :RDYYGCYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=84518 # 1zdyA.76.42 read from T0547.t06.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)G77 (1zdyA)G44 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1zdyA)S51 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :K 1zdyA 43 :E T0547 78 :GFNAVY 1zdyA 45 :GSVVVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=84520 # 1itxA.76.119 read from T0547.t06.many.frag # found chain 1itxA in training set T0547 76 :KGGFNAVYP 1itxA 152 :NPNLKTIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=84521 # 1nar.76.74 read from T0547.t06.many.frag # found chain 1nar in training set Warning: unaligning (T0547)P84 (1nar)S83 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 1nar 75 :HPEVKVVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=84522 # 1n55A.76.34 read from T0547.t06.many.frag # found chain 1n55A in training set Warning: unaligning (T0547)G77 (1n55A)H35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1n55A)A42 because D (zeta) conformation "forbidden" or filtered. T0547 76 :K 1n55A 34 :S T0547 78 :GFNAVY 1n55A 36 :DVQCVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=84524 # 1bu8A.76.66 read from T0547.t06.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)G78 (1bu8A)D67 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1bu8A)K69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1bu8A)I73 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KG 1bu8A 65 :QL T0547 79 :F 1bu8A 68 :R T0547 81 :AVY 1bu8A 70 :TRF Number of specific fragments extracted= 3 number of extra gaps= 3 total=84527 # 2al2A.76.237 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)K76 (2al2A)D238 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y83 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)D246 Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)D246 T0547 77 :GGFNAV 2al2A 239 :GKVKIG Number of specific fragments extracted= 1 number of extra gaps= 2 total=84528 # 1fjgI.76.55 read from T0547.t06.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)P84 (1fjgI)T64 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 1fjgI 56 :LGRFDAYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=84529 # 1qwnA.76.120 read from T0547.t06.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G78 (1qwnA)E123 because G (3-10) conformation "forbidden" or filtered. T0547 76 :KG 1qwnA 121 :NP T0547 79 :FNAVYP 1qwnA 124 :MKFIWA Number of specific fragments extracted= 2 number of extra gaps= 1 total=84531 # 1r2mA.76.44 read from T0547.t06.many.frag # found chain 1r2mA in template set Warning: unaligning (T0547)G77 (1r2mA)K46 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1r2mA)C53 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :K 1r2mA 45 :S T0547 78 :GFNAVY 1r2mA 47 :GSKPLC Number of specific fragments extracted= 2 number of extra gaps= 2 total=84533 # 1pjr.76.22 read from T0547.t06.many.frag # found chain 1pjr in template set T0547 76 :KGGFNAVYP 1pjr 23 :TEGPLLIMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=84534 # 1vefA.76.100 read from T0547.t06.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)A81 (1vefA)R106 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFN 1vefA 101 :PPELN T0547 82 :VYP 1vefA 107 :VFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=84536 # 1xccA.76.29 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)W33 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)W33 Warning: unaligning (T0547)N80 (1xccA)A34 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1xccA)S38 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KG 1xccA 30 :EN T0547 81 :AVY 1xccA 35 :ILF Number of specific fragments extracted= 2 number of extra gaps= 2 total=84538 # 1w8sA.76.13 read from T0547.t06.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)G77 (1w8sA)R15 because G (3-10) conformation "forbidden" or filtered. T0547 76 :K 1w8sA 14 :R T0547 78 :GFNAVYP 1w8sA 16 :GKSIILA Number of specific fragments extracted= 2 number of extra gaps= 1 total=84540 # 2basA.76.103 read from T0547.t06.many.frag # found chain 2basA in template set T0547 76 :KGGFNAVYP 2basA 80 :DSDLLIFMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=84541 # 1ne9A.76.64 read from T0547.t06.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)G77 (1ne9A)T66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G78 (1ne9A)D67 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1ne9A)K69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1ne9A)F70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1ne9A)A73 because D (zeta) conformation "forbidden" or filtered. T0547 76 :K 1ne9A 65 :P T0547 79 :F 1ne9A 68 :K T0547 82 :VY 1ne9A 71 :AY Number of specific fragments extracted= 3 number of extra gaps= 3 total=84544 # 1vchA.76.49 read from T0547.t06.many.frag # found chain 1vchA in template set Warning: unaligning (T0547)P84 (1vchA)T58 because Y (epsilon') conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 1vchA 50 :PKEAEILF Number of specific fragments extracted= 1 number of extra gaps= 1 total=84545 # 1g8kA.76.291 read from T0547.t06.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)K76 (1g8kA)G292 because S (epsilon) conformation "forbidden" or filtered. T0547 77 :GGFNAVYP 1g8kA 293 :NDRVLHLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=84546 # 1vd6A.76.91 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 76 :KGGFNAVYP 1vd6A 92 :FPQAVFNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=84547 # 1v4vA.76.30 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)P84 (1v4vA)L39 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFNAVY 1v4vA 31 :IPGLKPLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=84548 # 2fqxA.76.59 read from T0547.t06.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)G77 (2fqxA)E76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (2fqxA)L80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :K 2fqxA 75 :D T0547 78 :GFN 2fqxA 77 :NMG T0547 82 :VY 2fqxA 81 :VV Number of specific fragments extracted= 3 number of extra gaps= 3 total=84551 # 1kyqA.76.33 read from T0547.t06.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)G77 (1kyqA)T35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1kyqA)V42 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :K 1kyqA 34 :P T0547 78 :GFNAVY 1kyqA 36 :GCKLTL Number of specific fragments extracted= 2 number of extra gaps= 2 total=84553 # 2bhuA.76.73 read from T0547.t06.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)G77 (2bhuA)P75 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (2bhuA)Y79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (2bhuA)V82 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :K 2bhuA 74 :G T0547 78 :GFN 2bhuA 76 :GAR T0547 82 :VY 2bhuA 80 :LF Number of specific fragments extracted= 3 number of extra gaps= 3 total=84556 # 1i0dA.76.58 read from T0547.t06.many.frag # found chain 1i0dA in template set Warning: unaligning (T0547)G77 (1i0dA)A93 because G (3-10) conformation "forbidden" or filtered. T0547 76 :K 1i0dA 92 :A T0547 78 :GFNAVYP 1i0dA 94 :GVRTIVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=84558 # 1ryoA.76.30 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)A81 (1ryoA)S36 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. T0547 76 :KGGFN 1ryoA 31 :PSDGP T0547 82 :VY 1ryoA 37 :VA Number of specific fragments extracted= 2 number of extra gaps= 2 total=84560 # 7odcA.77.59 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 77 :GGFNAVYPL 7odcA 60 :PRVTPFYAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=84561 # 1o97D.77.31 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)P84 (1o97D)A39 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1o97D 32 :GEDKVVV T0547 85 :L 1o97D 40 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=84563 # 1ow1A.77.101 read from T0547.t06.many.frag # found chain 1ow1A in training set T0547 77 :GGFNAVYPL 1ow1A 3571 :TDYCLLLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84564 # 1bjt.77.57 read from T0547.t06.many.frag # found chain 1bjt in template set T0547 77 :GGFNAVYPL 1bjt 466 :RDYYGCYPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=84565 # 1o8xA.77.26 read from T0547.t06.many.frag # found chain 1o8xA in training set Warning: unaligning (T0547)G77 (1o8xA)A27 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE in next template residue (1o8xA)L30 Warning: unaligning (T0547)N80 because of BadResidue code BAD_PEPTIDE at template residue (1o8xA)L30 Warning: unaligning (T0547)A81 (1o8xA)V31 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :G 1o8xA 28 :G T0547 82 :VYPL 1o8xA 32 :FFYF Number of specific fragments extracted= 2 number of extra gaps= 2 total=84567 # 2fqxA.77.60 read from T0547.t06.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 2fqxA 76 :ENMGLVV T0547 85 :L 2fqxA 84 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=84569 # 1dqzA.77.59 read from T0547.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)G77 (1dqzA)S62 because G (3-10) conformation "forbidden" or filtered. T0547 78 :GFNAVYPL 1dqzA 63 :GLSVIMPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=84570 # 1ug6A.77.108 read from T0547.t06.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)G77 (1ug6A)S109 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N80 (1ug6A)T112 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1ug6A)T116 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GF 1ug6A 110 :GI T0547 81 :AVY 1ug6A 113 :PFL T0547 85 :L 1ug6A 117 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=84573 # 1qwnA.77.121 read from T0547.t06.many.frag # found chain 1qwnA in training set Warning: unaligning (T0547)G78 (1qwnA)E123 because G (3-10) conformation "forbidden" or filtered. T0547 77 :G 1qwnA 122 :P T0547 79 :FNAVYPL 1qwnA 124 :MKFIWAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=84575 # 1l8aA.77.284 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)G77 (1l8aA)A285 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1l8aA)V292 because D (zeta) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1l8aA 286 :GWNVIK T0547 85 :L 1l8aA 293 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=84577 # 2b0cA.77.105 read from T0547.t06.many.frag # found chain 2b0cA in template set Warning: unaligning (T0547)G77 (2b0cA)Q106 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (2b0cA)L113 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFNAVY 2b0cA 107 :GHRVVV T0547 85 :L 2b0cA 114 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=84579 # 1i0dA.77.59 read from T0547.t06.many.frag # found chain 1i0dA in template set Warning: unaligning (T0547)G77 (1i0dA)A93 because G (3-10) conformation "forbidden" or filtered. T0547 78 :GFNAVYPL 1i0dA 94 :GVRTIVDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=84580 # 1bu8A.77.67 read from T0547.t06.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)N80 (1bu8A)K69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1bu8A)I73 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGF 1bu8A 66 :LDR T0547 81 :AVY 1bu8A 70 :TRF T0547 85 :L 1bu8A 74 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=84583 # 1zdyA.77.43 read from T0547.t06.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)P84 (1zdyA)S51 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1zdyA 44 :GGSVVVF T0547 85 :L 1zdyA 52 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=84585 # 1v4vA.77.31 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)P84 (1v4vA)L39 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1v4vA 32 :PGLKPLV T0547 85 :L 1v4vA 40 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=84587 # 1wcwA.77.57 read from T0547.t06.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)G77 (1wcwA)Q58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1wcwA)L62 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFN 1wcwA 59 :GVD T0547 82 :VYPL 1wcwA 63 :FLAT Number of specific fragments extracted= 2 number of extra gaps= 2 total=84589 # 1nar.77.75 read from T0547.t06.many.frag # found chain 1nar in training set Warning: unaligning (T0547)P84 (1nar)S83 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1nar 76 :PEVKVVI T0547 85 :L 1nar 84 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=84591 # 1xqwA.77.94 read from T0547.t06.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)P84 (1xqwA)M102 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1xqwA 95 :GNEKVFL T0547 85 :L 1xqwA 103 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=84593 # 2al2A.77.238 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)G78 (2al2A)K240 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y83 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)D246 Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)D246 T0547 77 :G 2al2A 239 :G T0547 79 :FNAV 2al2A 241 :VKIG T0547 85 :L 2al2A 247 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=84596 # 1itxA.77.120 read from T0547.t06.many.frag # found chain 1itxA in training set T0547 77 :GGFNAVYPL 1itxA 153 :PNLKTIISV Number of specific fragments extracted= 1 number of extra gaps= 0 total=84597 # 1vefA.77.101 read from T0547.t06.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)A81 (1vefA)R106 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1vefA)V110 because Y (epsilon') conformation "forbidden" or filtered. T0547 77 :GGFN 1vefA 102 :PELN T0547 82 :VYP 1vefA 107 :VFP Number of specific fragments extracted= 2 number of extra gaps= 2 total=84599 # 1ne9A.77.65 read from T0547.t06.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)P84 (1ne9A)A73 because D (zeta) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1ne9A 66 :TDKKFAY T0547 85 :L 1ne9A 74 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=84601 # 1zc6A.77.74 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)P84 (1zc6A)G82 because D (zeta) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1zc6A 75 :SACAIGL T0547 85 :L 1zc6A 83 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=84603 # 1fjgI.77.56 read from T0547.t06.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)P84 (1fjgI)T64 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1fjgI 57 :GRFDAYI T0547 85 :L 1fjgI 65 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=84605 # 1q7zA.77.97 read from T0547.t06.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)P84 (1q7zA)D105 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGFNAVY 1q7zA 98 :GEKLVFG T0547 85 :L 1q7zA 106 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=84607 # 1vd6A.77.92 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)G78 (1vd6A)Q94 because G (3-10) conformation "forbidden" or filtered. T0547 77 :G 1vd6A 93 :P T0547 79 :FNAVYPL 1vd6A 95 :AVFNVEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84609 # 1o66A.77.35 read from T0547.t06.many.frag # found chain 1o66A in training set Warning: unaligning (T0547)G77 (1o66A)A34 because G (3-10) conformation "forbidden" or filtered. T0547 78 :GFNAVYPL 1o66A 35 :GVEMLLVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=84610 # 1usgA.77.67 read from T0547.t06.many.frag # found chain 1usgA in training set Warning: unaligning (T0547)N80 (1usgA)K71 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (1usgA)H76 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1usgA)H76 T0547 77 :GGF 1usgA 68 :DGI T0547 81 :AVY 1usgA 72 :YVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=84612 # 1r2mA.77.45 read from T0547.t06.many.frag # found chain 1r2mA in template set Warning: unaligning (T0547)N80 (1r2mA)K49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1r2mA)C53 because E (beta_S) conformation "forbidden" or filtered. T0547 77 :GGF 1r2mA 46 :KGS T0547 81 :AVY 1r2mA 50 :PLC T0547 85 :L 1r2mA 54 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=84615 # 1tqhA.77.41 read from T0547.t06.many.frag # found chain 1tqhA in training set Warning: unaligning (T0547)G77 (1tqhA)K42 because G (3-10) conformation "forbidden" or filtered. T0547 78 :GFNAVYPL 1tqhA 43 :GYTCHAPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=84616 # 7odcA.78.60 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G78 (7odcA)R61 because G (3-10) conformation "forbidden" or filtered. T0547 79 :FNAVYPLK 7odcA 62 :VTPFYAVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=84617 # 1ow1A.78.102 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)F79 (1ow1A)Y3573 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1ow1A)P3580 because P (beta_P) conformation "forbidden" or filtered. T0547 78 :G 1ow1A 3572 :D T0547 80 :NAVYPL 1ow1A 3574 :CLLLAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=84619 # 1bjt.78.58 read from T0547.t06.many.frag # found chain 1bjt in template set T0547 78 :GFNAVYPLK 1bjt 467 :DYYGCYPLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=84620 # 1o97D.78.32 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)A81 (1o97D)V36 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1o97D)A39 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFN 1o97D 33 :EDK T0547 82 :VY 1o97D 37 :VV T0547 85 :LK 1o97D 40 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=84623 # 1o8xA.78.27 read from T0547.t06.many.frag # found chain 1o8xA in training set Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE in next template residue (1o8xA)L30 Warning: unaligning (T0547)N80 because of BadResidue code BAD_PEPTIDE at template residue (1o8xA)L30 Warning: unaligning (T0547)K86 (1o8xA)S36 because Y (epsilon') conformation "forbidden" or filtered. T0547 78 :G 1o8xA 28 :G T0547 81 :AVYPL 1o8xA 31 :VFFYF Number of specific fragments extracted= 2 number of extra gaps= 2 total=84625 # 2fqxA.78.61 read from T0547.t06.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFNAVY 2fqxA 77 :NMGLVV T0547 85 :LK 2fqxA 84 :CG Number of specific fragments extracted= 2 number of extra gaps= 1 total=84627 # 1ug6A.78.109 read from T0547.t06.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)P84 (1ug6A)T116 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1ug6A 110 :GITPFL T0547 85 :LK 1ug6A 117 :LY Number of specific fragments extracted= 2 number of extra gaps= 1 total=84629 # 1l8aA.78.285 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)P84 (1l8aA)V292 because D (zeta) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1l8aA 286 :GWNVIK T0547 85 :LK 1l8aA 293 :MW Number of specific fragments extracted= 2 number of extra gaps= 1 total=84631 # 2b0cA.78.106 read from T0547.t06.many.frag # found chain 2b0cA in template set Warning: unaligning (T0547)P84 (2b0cA)L113 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFNAVY 2b0cA 107 :GHRVVV T0547 85 :LK 2b0cA 114 :SN Number of specific fragments extracted= 2 number of extra gaps= 1 total=84633 # 1dqzA.78.60 read from T0547.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)K86 (1dqzA)G71 because S (epsilon) conformation "forbidden" or filtered. T0547 78 :GFNAVYPL 1dqzA 63 :GLSVIMPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=84634 # 1wcwA.78.58 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 78 :GFNAVYPLK 1wcwA 59 :GVDLFLATT Number of specific fragments extracted= 1 number of extra gaps= 0 total=84635 # 1v4vA.78.32 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)P84 (1v4vA)L39 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GFNAVY 1v4vA 33 :GLKPLV T0547 85 :LK 1v4vA 40 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=84637 # 1zc6A.78.75 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)G78 (1zc6A)A76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1zc6A)G82 because D (zeta) conformation "forbidden" or filtered. T0547 79 :FNAVY 1zc6A 77 :CAIGL T0547 85 :LK 1zc6A 83 :LS Number of specific fragments extracted= 2 number of extra gaps= 2 total=84639 # 1ne9A.78.66 read from T0547.t06.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)A81 (1ne9A)F70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1ne9A)A73 because D (zeta) conformation "forbidden" or filtered. T0547 78 :GFN 1ne9A 67 :DKK T0547 82 :VY 1ne9A 71 :AY T0547 85 :LK 1ne9A 74 :SK Number of specific fragments extracted= 3 number of extra gaps= 2 total=84642 # 1knwA.78.45 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 78 :GFNAVYPLK 1knwA 46 :FDVVRFAQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=84643 # 1qwnA.78.122 read from T0547.t06.many.frag # found chain 1qwnA in training set T0547 78 :GFNAVYPLK 1qwnA 123 :EMKFIWAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=84644 # 1i0dA.78.60 read from T0547.t06.many.frag # found chain 1i0dA in template set T0547 78 :GFNAVYPLK 1i0dA 94 :GVRTIVDVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=84645 # 1zdyA.78.44 read from T0547.t06.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)P84 (1zdyA)S51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1zdyA)A53 because Y (epsilon') conformation "forbidden" or filtered. T0547 78 :GFNAVY 1zdyA 45 :GSVVVF T0547 85 :L 1zdyA 52 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=84647 # 1xqwA.78.95 read from T0547.t06.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)N80 (1xqwA)K98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1xqwA)M102 because E (beta_S) conformation "forbidden" or filtered. T0547 78 :GF 1xqwA 96 :NE T0547 81 :AVY 1xqwA 99 :VFL T0547 85 :LK 1xqwA 103 :GS Number of specific fragments extracted= 3 number of extra gaps= 2 total=84650 # 1fyeA.78.60 read from T0547.t06.many.frag # found chain 1fyeA in training set T0547 78 :GFNAVYPLK 1fyeA 61 :GVNVTGIHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=84651 # 1xccA.78.31 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)W33 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)W33 Warning: unaligning (T0547)P84 (1xccA)S38 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVY 1xccA 34 :AILF T0547 85 :LK 1xccA 39 :HP Number of specific fragments extracted= 2 number of extra gaps= 2 total=84653 # 1bu8A.78.68 read from T0547.t06.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)G78 (1bu8A)D67 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1bu8A)I73 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FNAVY 1bu8A 68 :RKTRF T0547 85 :LK 1bu8A 74 :VH Number of specific fragments extracted= 2 number of extra gaps= 2 total=84655 # 1n3lA.78.34 read from T0547.t06.many.frag # found chain 1n3lA in training set T0547 78 :GFNAVYPLK 1n3lA 35 :ELKIYWGTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=84656 # 2f2hA.78.234 read from T0547.t06.many.frag # found chain 2f2hA in template set T0547 78 :GFNAVYPLK 2f2hA 235 :EYLEYFVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=84657 # 1i6lA.78.73 read from T0547.t06.many.frag # found chain 1i6lA in training set Warning: unaligning (T0547)K86 (1i6lA)E82 because G (3-10) conformation "forbidden" or filtered. T0547 78 :GFNAVYPL 1i6lA 74 :QATLFIQS Number of specific fragments extracted= 1 number of extra gaps= 1 total=84658 # 1pea.78.98 read from T0547.t06.many.frag # found chain 1pea in template set T0547 78 :GFNAVYPLK 1pea 99 :DALLCYPTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=84659 # 1vefA.78.102 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 78 :GFNAVYPLK 1vefA 103 :ELNRVFPVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=84660 # 1vd6A.78.93 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)G78 (1vd6A)Q94 because G (3-10) conformation "forbidden" or filtered. T0547 79 :FNAVYPLK 1vd6A 95 :AVFNVELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=84661 # 1rcqA.78.24 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G78 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)A26 Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)A26 T0547 80 :NAVYPLK 1rcqA 27 :RALAVIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=84662 # 2bfdB.78.131 read from T0547.t06.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)G78 (2bfdB)S129 because G (3-10) conformation "forbidden" or filtered. T0547 79 :FNAVYPLK 2bfdB 130 :LTIRSPWG Number of specific fragments extracted= 1 number of extra gaps= 1 total=84663 # 7odcA.79.61 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 79 :FNAVYPLKV 7odcA 62 :VTPFYAVKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=84664 # 1ow1A.79.103 read from T0547.t06.many.frag # found chain 1ow1A in training set T0547 79 :FNAVYPLKV 1ow1A 3573 :YCLLLALPC Number of specific fragments extracted= 1 number of extra gaps= 0 total=84665 # 1o97D.79.33 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)P84 (1o97D)A39 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FNAVY 1o97D 34 :DKVVV T0547 85 :LKV 1o97D 40 :VIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=84667 # 1bjt.79.59 read from T0547.t06.many.frag # found chain 1bjt in template set T0547 79 :FNAVYPLKV 1bjt 468 :YYGCYPLRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84668 # 2fqxA.79.62 read from T0547.t06.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FNAVY 2fqxA 78 :MGLVV T0547 85 :LKV 2fqxA 84 :CGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=84670 # 1o8xA.79.28 read from T0547.t06.many.frag # found chain 1o8xA in training set Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE in next template residue (1o8xA)L30 Warning: unaligning (T0547)N80 because of BadResidue code BAD_PEPTIDE at template residue (1o8xA)L30 Warning: unaligning (T0547)K86 (1o8xA)S36 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVYPL 1o8xA 31 :VFFYF T0547 87 :V 1o8xA 37 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=84672 # 1knwA.79.46 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 79 :FNAVYPLKV 1knwA 47 :DVVRFAQKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=84673 # 1zc6A.79.76 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)P84 (1zc6A)G82 because D (zeta) conformation "forbidden" or filtered. T0547 79 :FNAVY 1zc6A 77 :CAIGL T0547 85 :LKV 1zc6A 83 :LSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=84675 # 1l8aA.79.286 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)P84 (1l8aA)V292 because D (zeta) conformation "forbidden" or filtered. T0547 79 :FNAVY 1l8aA 287 :WNVIK T0547 85 :LKV 1l8aA 293 :MWG Number of specific fragments extracted= 2 number of extra gaps= 1 total=84677 # 1dqzA.79.61 read from T0547.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)K86 (1dqzA)G71 because S (epsilon) conformation "forbidden" or filtered. T0547 79 :FNAVYPL 1dqzA 64 :LSVIMPV T0547 87 :V 1dqzA 72 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=84679 # 1wcwA.79.59 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 79 :FNAVYPLKV 1wcwA 60 :VDLFLATTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84680 # 2b0cA.79.107 read from T0547.t06.many.frag # found chain 2b0cA in template set Warning: unaligning (T0547)A81 (2b0cA)V110 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (2b0cA)L113 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :FN 2b0cA 108 :HR T0547 82 :VY 2b0cA 111 :VV T0547 85 :LKV 2b0cA 114 :SNT Number of specific fragments extracted= 3 number of extra gaps= 2 total=84683 # 1xccA.79.32 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)F79 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)W33 Warning: unaligning (T0547)P84 (1xccA)S38 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVY 1xccA 34 :AILF T0547 85 :LKV 1xccA 39 :HPN Number of specific fragments extracted= 2 number of extra gaps= 2 total=84685 # 1ne9A.79.67 read from T0547.t06.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)P84 (1ne9A)A73 because D (zeta) conformation "forbidden" or filtered. T0547 79 :FNAVY 1ne9A 68 :KKFAY T0547 85 :LKV 1ne9A 74 :SKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=84687 # 1ug6A.79.110 read from T0547.t06.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)P84 (1ug6A)T116 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1ug6A)Y118 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1ug6A)W120 T0547 79 :FNAVY 1ug6A 111 :ITPFL T0547 85 :L 1ug6A 117 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=84689 # 1qwnA.79.123 read from T0547.t06.many.frag # found chain 1qwnA in training set T0547 79 :FNAVYPLKV 1qwnA 124 :MKFIWAEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=84690 # 1v4vA.79.33 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)N80 (1v4vA)K35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1v4vA)L39 because E (beta_S) conformation "forbidden" or filtered. T0547 79 :F 1v4vA 34 :L T0547 81 :AVY 1v4vA 36 :PLV T0547 85 :LKV 1v4vA 40 :LTG Number of specific fragments extracted= 3 number of extra gaps= 2 total=84693 # 1pjr.79.25 read from T0547.t06.many.frag # found chain 1pjr in template set T0547 79 :FNAVYPLKV 1pjr 26 :PLLIMAGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84694 # 2f2hA.79.235 read from T0547.t06.many.frag # found chain 2f2hA in template set T0547 79 :FNAVYPLKV 2f2hA 236 :YLEYFVIDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84695 # 2bfdB.79.132 read from T0547.t06.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)K86 (2bfdB)G137 because S (epsilon) conformation "forbidden" or filtered. T0547 79 :FNAVYPL 2bfdB 130 :LTIRSPW T0547 87 :V 2bfdB 138 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=84697 # 1n3lA.79.35 read from T0547.t06.many.frag # found chain 1n3lA in training set T0547 79 :FNAVYPLKV 1n3lA 36 :LKIYWGTAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=84698 # 1i6lA.79.74 read from T0547.t06.many.frag # found chain 1i6lA in training set T0547 79 :FNAVYPLKV 1i6lA 75 :ATLFIQSEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=84699 # 1zpdA.79.17 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)P84 (1zpdA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :FNAVY 1zpdA 18 :LKHHF T0547 85 :LKV 1zpdA 24 :VAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=84701 # 1jftA.79.114 read from T0547.t06.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)A81 (1jftA)G118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1jftA)V121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1jftA)S124 because T (delta_L) conformation "forbidden" or filtered. T0547 79 :FN 1jftA 116 :VD T0547 82 :VY 1jftA 119 :LL T0547 85 :LK 1jftA 122 :MC Number of specific fragments extracted= 3 number of extra gaps= 3 total=84704 # 1xqwA.79.96 read from T0547.t06.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)N80 (1xqwA)K98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1xqwA)M102 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1xqwA)A105 because S (epsilon) conformation "forbidden" or filtered. T0547 79 :F 1xqwA 97 :E T0547 81 :AVY 1xqwA 99 :VFL T0547 85 :LK 1xqwA 103 :GS Number of specific fragments extracted= 3 number of extra gaps= 3 total=84707 # 1zdyA.79.45 read from T0547.t06.many.frag # found chain 1zdyA in training set Warning: unaligning (T0547)P84 (1zdyA)S51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1zdyA)A53 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :FNAVY 1zdyA 46 :SVVVF T0547 85 :L 1zdyA 52 :M T0547 87 :V 1zdyA 54 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=84710 # 1us0A.79.39 read from T0547.t06.many.frag # found chain 1us0A in training set Warning: unaligning (T0547)A81 (1us0A)H41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1us0A)C44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1us0A)A45 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :FN 1us0A 39 :YR T0547 82 :VY 1us0A 42 :ID T0547 86 :KV 1us0A 46 :HV Number of specific fragments extracted= 3 number of extra gaps= 2 total=84713 # 1t71A.79.36 read from T0547.t06.many.frag # found chain 1t71A in template set Warning: unaligning (T0547)P84 (1t71A)A42 because G (3-10) conformation "forbidden" or filtered. T0547 79 :FNAVY 1t71A 37 :LVIVN T0547 85 :LKV 1t71A 43 :ENT Number of specific fragments extracted= 2 number of extra gaps= 1 total=84715 # 1vd6A.79.94 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1vd6A)F104 T0547 79 :FNAVYPLK 1vd6A 95 :AVFNVELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=84716 # 2a5yB.79.153 read from T0547.t06.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)A81 (2a5yB)F156 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (2a5yB)G159 because Y (epsilon') conformation "forbidden" or filtered. T0547 79 :FN 2a5yB 154 :FL T0547 82 :VY 2a5yB 157 :LH T0547 85 :LKV 2a5yB 160 :RAG Number of specific fragments extracted= 3 number of extra gaps= 2 total=84719 # 7odcA.80.62 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 80 :NAVYPLKVN 7odcA 63 :TPFYAVKCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=84720 # 1knwA.80.47 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A81 (1knwA)V49 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :N 1knwA 48 :V T0547 82 :VYPLKVN 1knwA 50 :RFAQKAC Number of specific fragments extracted= 2 number of extra gaps= 1 total=84722 # 1ow1A.80.104 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)N80 (1ow1A)C3574 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A81 (1ow1A)L3575 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VYPLKVN 1ow1A 3576 :LLALPCG Number of specific fragments extracted= 1 number of extra gaps= 1 total=84723 # 1o97D.80.34 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)P84 (1o97D)A39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1o97D)G42 because Y (epsilon') conformation "forbidden" or filtered. T0547 80 :NAVY 1o97D 35 :KVVV T0547 85 :LK 1o97D 40 :VI T0547 88 :N 1o97D 43 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=84726 # 1bjt.80.60 read from T0547.t06.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)K86 (1bjt)R475 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVYPL 1bjt 469 :YGCYPL T0547 87 :VN 1bjt 476 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=84728 # 2fqxA.80.63 read from T0547.t06.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)A81 (2fqxA)L80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :N 2fqxA 79 :G T0547 82 :VY 2fqxA 81 :VV T0547 85 :LKVN 2fqxA 84 :CGSF Number of specific fragments extracted= 3 number of extra gaps= 2 total=84731 # 1o8xA.80.29 read from T0547.t06.many.frag # found chain 1o8xA in training set Warning: unaligning (T0547)N80 because of BadResidue code BAD_PEPTIDE at template residue (1o8xA)L30 Warning: unaligning (T0547)K86 (1o8xA)S36 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVYPL 1o8xA 31 :VFFYF T0547 87 :VN 1o8xA 37 :AS Number of specific fragments extracted= 2 number of extra gaps= 2 total=84733 # 1zc6A.80.77 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)P84 (1zc6A)G82 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1zc6A)S84 because P (beta_P) conformation "forbidden" or filtered. T0547 80 :NAVY 1zc6A 78 :AIGL T0547 85 :L 1zc6A 83 :L T0547 87 :VN 1zc6A 85 :GV Number of specific fragments extracted= 3 number of extra gaps= 2 total=84736 # 1yzxA.80.8 read from T0547.t06.many.frag # found chain 1yzxA in template set Warning: unaligning (T0547)P84 (1yzxA)D13 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVY 1yzxA 9 :ELFY T0547 85 :LKVN 1yzxA 14 :VLSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=84738 # 1t71A.80.37 read from T0547.t06.many.frag # found chain 1t71A in template set Warning: unaligning (T0547)P84 (1t71A)A42 because G (3-10) conformation "forbidden" or filtered. T0547 80 :NAVY 1t71A 38 :VIVN T0547 85 :LKVN 1t71A 43 :ENTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=84740 # 1xccA.80.33 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)P84 (1xccA)S38 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVY 1xccA 34 :AILF T0547 85 :LKVN 1xccA 39 :HPND Number of specific fragments extracted= 2 number of extra gaps= 1 total=84742 # 1ne9A.80.68 read from T0547.t06.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)P84 (1ne9A)A73 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1ne9A)P77 because C (cis) conformation "forbidden" or filtered. T0547 80 :NAVY 1ne9A 69 :KFAY T0547 85 :LKV 1ne9A 74 :SKG Number of specific fragments extracted= 2 number of extra gaps= 2 total=84744 # 1zpdA.80.18 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)N80 (1zpdA)K19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1zpdA)A23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1zpdA)A25 because P (beta_P) conformation "forbidden" or filtered. T0547 81 :AVY 1zpdA 20 :HHF T0547 85 :L 1zpdA 24 :V T0547 87 :VN 1zpdA 26 :GD Number of specific fragments extracted= 3 number of extra gaps= 3 total=84747 # 1pjr.80.26 read from T0547.t06.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)V87 (1pjr)G34 because T (delta_L) conformation "forbidden" or filtered. T0547 80 :NAVYPLK 1pjr 27 :LLIMAGA T0547 88 :N 1pjr 35 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=84749 # 1l8aA.80.287 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)P84 (1l8aA)V292 because D (zeta) conformation "forbidden" or filtered. T0547 80 :NAVY 1l8aA 288 :NVIK T0547 85 :LKVN 1l8aA 293 :MWGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=84751 # 1vd6A.80.95 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1vd6A)F104 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)F104 T0547 80 :NAVYPLK 1vd6A 96 :VFNVELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=84752 # 2f2hA.80.236 read from T0547.t06.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)K86 (2f2hA)D243 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 80 :NAVYPL 2f2hA 237 :LEYFVI T0547 87 :V 2f2hA 244 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=84754 # 2b8nA.80.52 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)P84 (2b8nA)V45 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (2b8nA)G46 because Y (epsilon') conformation "forbidden" or filtered. T0547 80 :NAVY 2b8nA 41 :ILVA T0547 86 :KVN 2b8nA 47 :KAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=84756 # 1ryoA.80.34 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. T0547 80 :NAVY 1ryoA 35 :PSVA T0547 85 :LKVN 1ryoA 40 :VKKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=84758 # 1dqzA.80.62 read from T0547.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)K86 (1dqzA)G71 because S (epsilon) conformation "forbidden" or filtered. T0547 80 :NAVYPL 1dqzA 65 :SVIMPV T0547 87 :VN 1dqzA 72 :GQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=84760 # 2b0cA.80.108 read from T0547.t06.many.frag # found chain 2b0cA in template set Warning: unaligning (T0547)P84 (2b0cA)L113 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (2b0cA)N117 because G (3-10) conformation "forbidden" or filtered. T0547 80 :NAVY 2b0cA 109 :RVVV T0547 85 :LKV 2b0cA 114 :SNT Number of specific fragments extracted= 2 number of extra gaps= 2 total=84762 # 1wcwA.80.60 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 80 :NAVYPLKVN 1wcwA 61 :DLFLATTGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=84763 # 1qwnA.80.124 read from T0547.t06.many.frag # found chain 1qwnA in training set T0547 80 :NAVYPLKVN 1qwnA 125 :KFIWAEISY Number of specific fragments extracted= 1 number of extra gaps= 0 total=84764 # 8abp.80.3 read from T0547.t06.many.frag # found chain 8abp in training set Warning: unaligning (T0547)N80 (8abp)K4 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (8abp)L8 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 8abp 5 :LGF T0547 85 :LKVN 8abp 9 :VKQP Number of specific fragments extracted= 2 number of extra gaps= 2 total=84766 # 2a3nA.80.56 read from T0547.t06.many.frag # found chain 2a3nA in training set Warning: unaligning (T0547)P84 (2a3nA)S49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (2a3nA)G51 because S (epsilon) conformation "forbidden" or filtered. T0547 80 :NAVY 2a3nA 45 :LFFA T0547 85 :L 2a3nA 50 :V T0547 87 :VN 2a3nA 52 :GS Number of specific fragments extracted= 3 number of extra gaps= 2 total=84769 # 1oboA.80.4 read from T0547.t06.many.frag # found chain 1oboA in training set Warning: unaligning (T0547)P84 (1oboA)G1009 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1oboA)T1010 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1oboA)T1012 because G (3-10) conformation "forbidden" or filtered. T0547 80 :NAVY 1oboA 1005 :GLFY T0547 86 :K 1oboA 1011 :Q T0547 88 :N 1oboA 1013 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=84772 # 2bfdB.80.133 read from T0547.t06.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)K86 (2bfdB)G137 because S (epsilon) conformation "forbidden" or filtered. T0547 80 :NAVYPL 2bfdB 131 :TIRSPW T0547 87 :VN 2bfdB 138 :CV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84774 # 1n3lA.80.36 read from T0547.t06.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)V87 (1n3lA)T44 because G (3-10) conformation "forbidden" or filtered. T0547 80 :NAVYPLK 1n3lA 37 :KIYWGTA T0547 88 :N 1n3lA 45 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=84776 # 1us0A.80.40 read from T0547.t06.many.frag # found chain 1us0A in training set Warning: unaligning (T0547)P84 (1us0A)C44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1us0A)A45 because Y (epsilon') conformation "forbidden" or filtered. T0547 80 :NAVY 1us0A 40 :RHID T0547 86 :KVN 1us0A 46 :HVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=84778 # 1i6lA.80.75 read from T0547.t06.many.frag # found chain 1i6lA in training set T0547 80 :NAVYPLKVN 1i6lA 76 :TLFIQSEVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=84779 # 7odcA.81.63 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 81 :AVYPLKVNQ 7odcA 64 :PFYAVKCND Number of specific fragments extracted= 1 number of extra gaps= 0 total=84780 # 1knwA.81.48 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 81 :AVYPLKVNQ 1knwA 49 :VRFAQKACS Number of specific fragments extracted= 1 number of extra gaps= 0 total=84781 # 1ow1A.81.105 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)N88 (1ow1A)G3582 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVYPLKV 1ow1A 3575 :LLLALPC T0547 89 :Q 1ow1A 3583 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=84783 # 1o97D.81.35 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)P84 (1o97D)A39 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 1o97D 36 :VVV T0547 85 :LKVNQ 1o97D 40 :VIGSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=84785 # 1bjt.81.61 read from T0547.t06.many.frag # found chain 1bjt in template set T0547 81 :AVYPLKVNQ 1bjt 470 :GCYPLRGKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=84786 # 1o8xA.81.30 read from T0547.t06.many.frag # found chain 1o8xA in training set Warning: unaligning (T0547)K86 (1o8xA)S36 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVYPL 1o8xA 31 :VFFYF T0547 87 :VNQ 1o8xA 37 :ASW Number of specific fragments extracted= 2 number of extra gaps= 1 total=84788 # 1zc6A.81.78 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)P84 (1zc6A)G82 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1zc6A)S84 because P (beta_P) conformation "forbidden" or filtered. T0547 81 :AVY 1zc6A 79 :IGL T0547 85 :L 1zc6A 83 :L T0547 87 :VNQ 1zc6A 85 :GVH Number of specific fragments extracted= 3 number of extra gaps= 2 total=84791 # 2f2hA.81.237 read from T0547.t06.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 81 :AVYPLKV 2f2hA 238 :EYFVIDG T0547 89 :Q 2f2hA 246 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=84793 # 2fqxA.81.64 read from T0547.t06.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 2fqxA 80 :LVV T0547 85 :LKVNQ 2fqxA 84 :CGSFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84795 # 8abp.81.4 read from T0547.t06.many.frag # found chain 8abp in training set Warning: unaligning (T0547)P84 (8abp)L8 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 8abp 5 :LGF T0547 85 :LKVNQ 8abp 9 :VKQPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=84797 # 1zpdA.81.19 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)P84 (1zpdA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVY 1zpdA 20 :HHF T0547 85 :LKVNQ 1zpdA 24 :VAGDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=84799 # 1yzxA.81.9 read from T0547.t06.many.frag # found chain 1yzxA in template set Warning: unaligning (T0547)P84 (1yzxA)D13 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 1yzxA 10 :LFY T0547 85 :LKVNQ 1yzxA 14 :VLSPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=84801 # 1ryoA.81.35 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 1ryoA 36 :SVA T0547 85 :LKVNQ 1ryoA 40 :VKKAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=84803 # 1vbkA.81.48 read from T0547.t06.many.frag # found chain 1vbkA in template set Warning: unaligning (T0547)P84 (1vbkA)I52 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 1vbkA 49 :GRI T0547 85 :LKVNQ 1vbkA 53 :VKTNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=84805 # 1q9jA.81.118 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)P84 (1q9jA)L122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1q9jA)M126 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1q9jA)A127 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVY 1q9jA 119 :TLY T0547 85 :LKV 1q9jA 123 :HHC Number of specific fragments extracted= 2 number of extra gaps= 2 total=84807 # 1l8aA.81.288 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)A81 (1l8aA)V289 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1l8aA)V292 because D (zeta) conformation "forbidden" or filtered. T0547 82 :VY 1l8aA 290 :IK T0547 85 :LKVNQ 1l8aA 293 :MWGSR Number of specific fragments extracted= 2 number of extra gaps= 2 total=84809 # 1vd6A.81.96 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1vd6A)F104 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)F104 Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)P105 T0547 81 :AVYPLK 1vd6A 97 :FNVELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=84810 # 1pjr.81.27 read from T0547.t06.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)V87 (1pjr)G34 because T (delta_L) conformation "forbidden" or filtered. T0547 81 :AVYPLK 1pjr 28 :LIMAGA T0547 88 :NQ 1pjr 35 :SG Number of specific fragments extracted= 2 number of extra gaps= 1 total=84812 # 1zhvA.81.101 read from T0547.t06.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)A81 (1zhvA)D103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1zhvA)L106 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1zhvA 104 :HL T0547 85 :LKVNQ 1zhvA 107 :VRSND Number of specific fragments extracted= 2 number of extra gaps= 2 total=84814 # 1xccA.81.34 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)P84 (1xccA)S38 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 1xccA 35 :ILF T0547 85 :LKVNQ 1xccA 39 :HPNDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=84816 # 1t71A.81.38 read from T0547.t06.many.frag # found chain 1t71A in template set Warning: unaligning (T0547)P84 (1t71A)A42 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1t71A)N44 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1t71A)H47 because L (left) conformation "forbidden" or filtered. T0547 81 :AVY 1t71A 39 :IVN T0547 85 :L 1t71A 43 :E T0547 87 :VN 1t71A 45 :TT Number of specific fragments extracted= 3 number of extra gaps= 3 total=84819 # 1oboA.81.5 read from T0547.t06.many.frag # found chain 1oboA in training set Warning: unaligning (T0547)P84 (1oboA)G1009 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L85 (1oboA)T1010 because Y (epsilon') conformation "forbidden" or filtered. T0547 81 :AVY 1oboA 1006 :LFY T0547 86 :KVNQ 1oboA 1011 :QTGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=84821 # 1t8tA.81.20 read from T0547.t06.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)A81 (1t8tA)I156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (1t8tA)V160 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1t8tA)V160 T0547 82 :VY 1t8tA 157 :II T0547 86 :KVNQ 1t8tA 161 :KKGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=84823 # 1vqoN.81.33 read from T0547.t06.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)A81 (1vqoN)R33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P84 (1vqoN)A36 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1vqoN 34 :LV T0547 85 :LKVNQ 1vqoN 37 :RKSNK Number of specific fragments extracted= 2 number of extra gaps= 2 total=84825 # 1wcwA.81.61 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 81 :AVYPLKVNQ 1wcwA 62 :LFLATTGVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=84826 # 1h8eA.81.200 read from T0547.t06.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)V87 (1h8eA)G207 because T (delta_L) conformation "forbidden" or filtered. T0547 81 :AVYPLK 1h8eA 201 :CIYVAI T0547 88 :NQ 1h8eA 208 :QK Number of specific fragments extracted= 2 number of extra gaps= 1 total=84828 # 1jubA.81.95 read from T0547.t06.many.frag # found chain 1jubA in training set T0547 81 :AVYPLKVNQ 1jubA 96 :IFFSIAGMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=84829 # 1dqzA.81.63 read from T0547.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)K86 (1dqzA)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1dqzA)G72 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (1dqzA)Q73 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1dqzA)S74 because L (left) conformation "forbidden" or filtered. T0547 81 :AVYPL 1dqzA 66 :VIMPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=84830 # 2b8nA.81.53 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)P84 (2b8nA)V45 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 2b8nA 42 :LVA T0547 85 :LKVNQ 2b8nA 46 :GKAAW Number of specific fragments extracted= 2 number of extra gaps= 1 total=84832 # 1gqiA.81.107 read from T0547.t06.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)P84 (1gqiA)I115 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1gqiA)A117 because E (beta_S) conformation "forbidden" or filtered. T0547 81 :AVY 1gqiA 112 :HVV T0547 85 :L 1gqiA 116 :V T0547 87 :VNQ 1gqiA 118 :ANS Number of specific fragments extracted= 3 number of extra gaps= 2 total=84835 # 7odcA.82.64 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N88 (7odcA)N71 because D (zeta) conformation "forbidden" or filtered. T0547 82 :VYPLKV 7odcA 65 :FYAVKC T0547 89 :QY 7odcA 72 :DS Number of specific fragments extracted= 2 number of extra gaps= 1 total=84837 # 1knwA.82.49 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 82 :VYPLKVNQY 1knwA 50 :RFAQKACSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=84838 # 1vbkA.82.49 read from T0547.t06.many.frag # found chain 1vbkA in template set Warning: unaligning (T0547)P84 (1vbkA)I52 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1vbkA 50 :RI T0547 85 :LKVNQY 1vbkA 53 :VKTNSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=84840 # 1o97D.82.36 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)P84 (1o97D)A39 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1o97D 37 :VV T0547 85 :LKVNQY 1o97D 40 :VIGSQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=84842 # 1ow1A.82.106 read from T0547.t06.many.frag # found chain 1ow1A in training set T0547 82 :VYPLKVNQY 1ow1A 3576 :LLALPCGRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=84843 # 2f2hA.82.238 read from T0547.t06.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 82 :VYPLKV 2f2hA 239 :YFVIDG T0547 89 :QY 2f2hA 246 :TP Number of specific fragments extracted= 2 number of extra gaps= 1 total=84845 # 1gqiA.82.108 read from T0547.t06.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)P84 (1gqiA)I115 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1gqiA 113 :VV T0547 85 :LKVNQY 1gqiA 116 :VAANSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=84847 # 2fqxA.82.65 read from T0547.t06.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (2fqxA)G85 because S (epsilon) conformation "forbidden" or filtered. T0547 82 :VY 2fqxA 81 :VV T0547 85 :L 2fqxA 84 :C T0547 87 :VNQY 2fqxA 86 :SFLV Number of specific fragments extracted= 3 number of extra gaps= 2 total=84850 # 1zc6A.82.79 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)P84 (1zc6A)G82 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1zc6A)S84 because P (beta_P) conformation "forbidden" or filtered. T0547 82 :VY 1zc6A 80 :GL T0547 85 :L 1zc6A 83 :L T0547 87 :VNQY 1zc6A 85 :GVHN Number of specific fragments extracted= 3 number of extra gaps= 2 total=84853 # 1zhvA.82.102 read from T0547.t06.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)P84 (1zhvA)L106 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1zhvA 104 :HL T0547 85 :LKVNQY 1zhvA 107 :VRSNDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84855 # 1o8xA.82.31 read from T0547.t06.many.frag # found chain 1o8xA in training set Warning: unaligning (T0547)K86 (1o8xA)S36 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :VYPL 1o8xA 32 :FFYF T0547 87 :VNQY 1o8xA 37 :ASWC Number of specific fragments extracted= 2 number of extra gaps= 1 total=84857 # 1q9jA.82.119 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)P84 (1q9jA)L122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1q9jA)A127 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :VY 1q9jA 120 :LY T0547 85 :LKVN 1q9jA 123 :HHCM T0547 90 :Y 1q9jA 128 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=84860 # 1ryoA.82.36 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :VY 1ryoA 37 :VA T0547 85 :LKVN 1ryoA 40 :VKKA T0547 90 :Y 1ryoA 45 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=84863 # 1zpdA.82.20 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)P84 (1zpdA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :VY 1zpdA 21 :HF T0547 85 :LKVNQY 1zpdA 24 :VAGDYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=84865 # 1vd6A.82.97 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1vd6A)F104 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)F104 Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)P105 Warning: unaligning (T0547)Y90 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)G106 T0547 82 :VYPLK 1vd6A 98 :NVELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=84866 # 8abp.82.5 read from T0547.t06.many.frag # found chain 8abp in training set Warning: unaligning (T0547)P84 (8abp)L8 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 8abp 6 :GF T0547 85 :LKVNQY 8abp 9 :VKQPEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=84868 # 1pjr.82.28 read from T0547.t06.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)V87 (1pjr)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1pjr)G36 because L (left) conformation "forbidden" or filtered. T0547 82 :VYPLK 1pjr 29 :IMAGA T0547 88 :N 1pjr 35 :S T0547 90 :Y 1pjr 37 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=84871 # 1jubA.82.96 read from T0547.t06.many.frag # found chain 1jubA in training set Warning: unaligning (T0547)Q89 (1jubA)S104 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :VYPLKVN 1jubA 97 :FFSIAGM T0547 90 :Y 1jubA 105 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=84873 # 1v5vA.82.152 read from T0547.t06.many.frag # found chain 1v5vA in training set Warning: unaligning (T0547)P84 (1v5vA)A155 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1v5vA)G158 because S (epsilon) conformation "forbidden" or filtered. T0547 82 :VY 1v5vA 153 :MF T0547 85 :LK 1v5vA 156 :VQ T0547 88 :NQY 1v5vA 159 :PKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=84876 # 1l8aA.82.289 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)P84 (1l8aA)V292 because D (zeta) conformation "forbidden" or filtered. T0547 82 :VY 1l8aA 290 :IK T0547 85 :LKVNQY 1l8aA 293 :MWGSRW Number of specific fragments extracted= 2 number of extra gaps= 1 total=84878 # 1bjt.82.62 read from T0547.t06.many.frag # found chain 1bjt in template set T0547 82 :VYPLKVNQY 1bjt 471 :CYPLRGKML Number of specific fragments extracted= 1 number of extra gaps= 0 total=84879 # 1xccA.82.35 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)P84 (1xccA)S38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1xccA)F43 because L (left) conformation "forbidden" or filtered. T0547 82 :VY 1xccA 36 :LF T0547 85 :LKVN 1xccA 39 :HPND T0547 90 :Y 1xccA 44 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=84882 # 1jalA.82.100 read from T0547.t06.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)V82 because of BadResidue code BAD_PEPTIDE in next template residue (1jalA)H102 Warning: unaligning (T0547)Y83 because of BadResidue code BAD_PEPTIDE at template residue (1jalA)H102 Warning: unaligning (T0547)N88 (1jalA)F107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)N109 Warning: unaligning (T0547)Y90 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)N109 T0547 84 :PLKV 1jalA 103 :VVRC Number of specific fragments extracted= 1 number of extra gaps= 2 total=84883 # 1v4vA.82.36 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)P84 (1v4vA)L39 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1v4vA 37 :LV T0547 85 :LKVNQY 1v4vA 40 :LTGQHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=84885 # 1ta0A.82.51 read from T0547.t06.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)P84 (1ta0A)V129 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1ta0A 127 :VY T0547 85 :LKVNQY 1ta0A 130 :LKRPHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84887 # 1t8tA.82.21 read from T0547.t06.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (1t8tA)V160 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1t8tA)V160 Warning: unaligning (T0547)K86 (1t8tA)K161 because P (beta_P) conformation "forbidden" or filtered. T0547 82 :VY 1t8tA 157 :II T0547 87 :VNQY 1t8tA 162 :KGGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=84889 # 2cvbA.82.36 read from T0547.t06.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)P84 (2cvbA)V39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (2cvbA)M41 because Y (epsilon') conformation "forbidden" or filtered. T0547 82 :VY 2cvbA 37 :AV T0547 85 :L 2cvbA 40 :F T0547 87 :VNQY 2cvbA 42 :CNHC Number of specific fragments extracted= 3 number of extra gaps= 2 total=84892 # 1yzxA.82.10 read from T0547.t06.many.frag # found chain 1yzxA in template set Warning: unaligning (T0547)P84 (1yzxA)D13 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1yzxA 11 :FY T0547 85 :LKVNQY 1yzxA 14 :VLSPYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=84894 # 1h8eA.82.201 read from T0547.t06.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)V87 (1h8eA)G207 because T (delta_L) conformation "forbidden" or filtered. T0547 82 :VYPLK 1h8eA 202 :IYVAI T0547 88 :NQY 1h8eA 208 :QKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=84896 # 1nar.82.80 read from T0547.t06.many.frag # found chain 1nar in training set Warning: unaligning (T0547)P84 (1nar)S83 because E (beta_S) conformation "forbidden" or filtered. T0547 82 :VY 1nar 81 :VI T0547 85 :LKVNQY 1nar 84 :IGGRGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84898 # 7odcA.83.65 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 83 :YPLKVNQYP 7odcA 66 :YAVKCNDSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=84899 # 1knwA.83.50 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 83 :YPLKVNQYP 1knwA 51 :FAQKACSNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=84900 # 1vbkA.83.50 read from T0547.t06.many.frag # found chain 1vbkA in template set Warning: unaligning (T0547)P84 (1vbkA)I52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1vbkA)K54 because P (beta_P) conformation "forbidden" or filtered. T0547 83 :Y 1vbkA 51 :I T0547 85 :L 1vbkA 53 :V T0547 87 :VNQYP 1vbkA 55 :TNSPK Number of specific fragments extracted= 3 number of extra gaps= 2 total=84903 # 1gqiA.83.109 read from T0547.t06.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)P84 (1gqiA)I115 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 1gqiA 114 :V T0547 85 :LKVNQYP 1gqiA 116 :VAANSDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=84905 # 2f2hA.83.239 read from T0547.t06.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 83 :YPLKV 2f2hA 240 :FVIDG T0547 89 :QYP 2f2hA 246 :TPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=84907 # 1o97D.83.37 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)P84 (1o97D)A39 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 1o97D 38 :V T0547 85 :LKVNQYP 1o97D 40 :VIGSQAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=84909 # 1ryoA.83.37 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :Y 1ryoA 38 :A T0547 85 :LKVN 1ryoA 40 :VKKA T0547 90 :YP 1ryoA 45 :YL Number of specific fragments extracted= 3 number of extra gaps= 2 total=84912 # 1ow1A.83.107 read from T0547.t06.many.frag # found chain 1ow1A in training set T0547 83 :YPLKVNQYP 1ow1A 3577 :LALPCGRDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=84913 # 1zhvA.83.103 read from T0547.t06.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)P84 (1zhvA)L106 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1zhvA)R108 because P (beta_P) conformation "forbidden" or filtered. T0547 83 :Y 1zhvA 105 :L T0547 85 :L 1zhvA 107 :V T0547 87 :VNQYP 1zhvA 109 :SNDLE Number of specific fragments extracted= 3 number of extra gaps= 2 total=84916 # 1q9jA.83.120 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)P84 (1q9jA)L122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1q9jA)A127 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :Y 1q9jA 121 :Y T0547 85 :LKVN 1q9jA 123 :HHCM T0547 90 :YP 1q9jA 128 :DG Number of specific fragments extracted= 3 number of extra gaps= 2 total=84919 # 1zc6A.83.80 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)P84 (1zc6A)G82 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1zc6A)S84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P91 (1zc6A)R89 because T (delta_L) conformation "forbidden" or filtered. T0547 83 :Y 1zc6A 81 :L T0547 85 :L 1zc6A 83 :L T0547 87 :VNQY 1zc6A 85 :GVHN Number of specific fragments extracted= 3 number of extra gaps= 3 total=84922 # 2cvbA.83.37 read from T0547.t06.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)P84 (2cvbA)V39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (2cvbA)M41 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :Y 2cvbA 38 :V T0547 85 :L 2cvbA 40 :F T0547 87 :VNQYP 2cvbA 42 :CNHCP Number of specific fragments extracted= 3 number of extra gaps= 2 total=84925 # 8abp.83.6 read from T0547.t06.many.frag # found chain 8abp in training set Warning: unaligning (T0547)P84 (8abp)L8 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 8abp 7 :F T0547 85 :LKVNQYP 8abp 9 :VKQPEEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=84927 # 2fqxA.83.66 read from T0547.t06.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 2fqxA 82 :V T0547 85 :LKVNQYP 2fqxA 84 :CGSFLVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=84929 # 1vd6A.83.98 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1vd6A)F104 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)F104 Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)P105 Warning: unaligning (T0547)Y90 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)G106 Warning: unaligning (T0547)P91 (1vd6A)L107 because G (3-10) conformation "forbidden" or filtered. T0547 83 :YPLK 1vd6A 99 :VELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=84930 # 1o8xA.83.32 read from T0547.t06.many.frag # found chain 1o8xA in training set Warning: unaligning (T0547)K86 (1o8xA)S36 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :YPL 1o8xA 33 :FYF T0547 87 :VNQYP 1o8xA 37 :ASWCP Number of specific fragments extracted= 2 number of extra gaps= 1 total=84932 # 1v5vA.83.153 read from T0547.t06.many.frag # found chain 1v5vA in training set Warning: unaligning (T0547)P84 (1v5vA)A155 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1v5vA)G158 because S (epsilon) conformation "forbidden" or filtered. T0547 83 :Y 1v5vA 154 :F T0547 85 :LK 1v5vA 156 :VQ T0547 88 :NQYP 1v5vA 159 :PKAR Number of specific fragments extracted= 3 number of extra gaps= 2 total=84935 # 1t8tA.83.22 read from T0547.t06.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (1t8tA)V160 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1t8tA)V160 Warning: unaligning (T0547)Q89 (1t8tA)G164 because T (delta_L) conformation "forbidden" or filtered. T0547 83 :Y 1t8tA 158 :I T0547 86 :KVN 1t8tA 161 :KKG T0547 90 :YP 1t8tA 165 :TR Number of specific fragments extracted= 3 number of extra gaps= 2 total=84938 # 1ta0A.83.52 read from T0547.t06.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)P84 (1ta0A)V129 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 1ta0A 128 :Y T0547 85 :LKVNQYP 1ta0A 130 :LKRPHVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=84940 # 1ua4A.83.33 read from T0547.t06.many.frag # found chain 1ua4A in template set T0547 83 :YPLKVNQYP 1ua4A 34 :DAIKYLDSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=84941 # 1pjr.83.29 read from T0547.t06.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)V87 (1pjr)G34 because T (delta_L) conformation "forbidden" or filtered. T0547 83 :YPLK 1pjr 30 :MAGA T0547 88 :NQYP 1pjr 35 :SGKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=84943 # 1zpdA.83.21 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)P84 (1zpdA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :Y 1zpdA 22 :F T0547 85 :LKVNQYP 1zpdA 24 :VAGDYNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=84945 # 1l8aA.83.290 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)P84 (1l8aA)V292 because D (zeta) conformation "forbidden" or filtered. T0547 83 :Y 1l8aA 291 :K T0547 85 :LKVNQYP 1l8aA 293 :MWGSRWD Number of specific fragments extracted= 2 number of extra gaps= 1 total=84947 # 1q5xA.83.36 read from T0547.t06.many.frag # found chain 1q5xA in template set Warning: unaligning (T0547)Q89 (1q5xA)E43 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P91 (1q5xA)N45 because G (3-10) conformation "forbidden" or filtered. T0547 83 :YPLKVN 1q5xA 37 :ITVKCF T0547 90 :Y 1q5xA 44 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=84949 # 1fvkA.83.22 read from T0547.t06.many.frag # found chain 1fvkA in training set Warning: unaligning (T0547)P84 (1fvkA)E24 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1fvkA)F26 because Y (epsilon') conformation "forbidden" or filtered. T0547 83 :Y 1fvkA 23 :L T0547 85 :L 1fvkA 25 :F T0547 87 :VNQYP 1fvkA 27 :SFFCP Number of specific fragments extracted= 3 number of extra gaps= 2 total=84952 # 1v4vA.83.37 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)P84 (1v4vA)L39 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 1v4vA 38 :V T0547 85 :LKVNQYP 1v4vA 40 :LTGQHRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=84954 # 1xccA.83.36 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)P84 (1xccA)S38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1xccA)F43 because L (left) conformation "forbidden" or filtered. T0547 83 :Y 1xccA 37 :F T0547 85 :LKVN 1xccA 39 :HPND T0547 90 :YP 1xccA 44 :TP Number of specific fragments extracted= 3 number of extra gaps= 2 total=84957 # 1jalA.83.101 read from T0547.t06.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)Y83 because of BadResidue code BAD_PEPTIDE at template residue (1jalA)H102 Warning: unaligning (T0547)N88 (1jalA)F107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)N109 Warning: unaligning (T0547)Y90 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)N109 T0547 84 :PLKV 1jalA 103 :VVRC Number of specific fragments extracted= 1 number of extra gaps= 2 total=84958 # 1qwgA.83.17 read from T0547.t06.many.frag # found chain 1qwgA in training set T0547 83 :YPLKVNQYP 1qwgA 18 :VLDKGLPPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=84959 # 1yzxA.83.11 read from T0547.t06.many.frag # found chain 1yzxA in template set Warning: unaligning (T0547)P84 (1yzxA)D13 because E (beta_S) conformation "forbidden" or filtered. T0547 83 :Y 1yzxA 12 :Y T0547 85 :LKVNQYP 1yzxA 14 :VLSPYSW Number of specific fragments extracted= 2 number of extra gaps= 1 total=84961 # 7odcA.84.66 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 84 :PLKVNQYPG 7odcA 67 :AVKCNDSRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=84962 # 1knwA.84.51 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 84 :PLKVNQYPG 1knwA 52 :AQKACSNIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=84963 # 1vbkA.84.51 read from T0547.t06.many.frag # found chain 1vbkA in template set Warning: unaligning (T0547)P84 (1vbkA)I52 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1vbkA 53 :VKTNSPKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=84964 # 1gqiA.84.110 read from T0547.t06.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)P84 (1gqiA)I115 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1gqiA 116 :VAANSDVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=84965 # 1ryoA.84.38 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P84 (1ryoA)C39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1ryoA)K41 because P (beta_P) conformation "forbidden" or filtered. T0547 85 :L 1ryoA 40 :V T0547 87 :VNQYPG 1ryoA 42 :KASYLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=84967 # 1zhvA.84.104 read from T0547.t06.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)P84 (1zhvA)L106 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1zhvA 107 :VRSNDLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=84968 # 2f2hA.84.240 read from T0547.t06.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 84 :PLKV 2f2hA 241 :VIDG T0547 89 :QYPG 2f2hA 246 :TPKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=84970 # 2cvbA.84.38 read from T0547.t06.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)P84 (2cvbA)V39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (2cvbA)M41 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :L 2cvbA 40 :F T0547 87 :VNQYPG 2cvbA 42 :CNHCPY Number of specific fragments extracted= 2 number of extra gaps= 2 total=84972 # 1q9jA.84.121 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)P84 (1q9jA)L122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1q9jA)A127 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :LKVN 1q9jA 123 :HHCM T0547 90 :YPG 1q9jA 128 :DGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=84974 # 1ua4A.84.34 read from T0547.t06.many.frag # found chain 1ua4A in template set T0547 84 :PLKVNQYPG 1ua4A 35 :AIKYLDSKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=84975 # 1o97D.84.38 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)P84 (1o97D)A39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (1o97D)I41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1o97D)Q44 because G (3-10) conformation "forbidden" or filtered. T0547 85 :L 1o97D 40 :V T0547 87 :VN 1o97D 42 :GS T0547 90 :YPG 1o97D 45 :ADA Number of specific fragments extracted= 3 number of extra gaps= 3 total=84978 # 1o8xA.84.33 read from T0547.t06.many.frag # found chain 1o8xA in training set T0547 84 :PLKVNQYPG 1o8xA 34 :YFSASWCPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=84979 # 1v5vA.84.154 read from T0547.t06.many.frag # found chain 1v5vA in training set Warning: unaligning (T0547)P84 (1v5vA)A155 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1v5vA 156 :VQGPKARD Number of specific fragments extracted= 1 number of extra gaps= 1 total=84980 # 1t8tA.84.23 read from T0547.t06.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)P84 because of BadResidue code BAD_PEPTIDE in next template residue (1t8tA)V160 Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1t8tA)V160 T0547 86 :KVNQYPG 1t8tA 161 :KKGGTRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=84981 # 1hw1A.84.67 read from T0547.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0547)N88 (1hw1A)N72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G92 (1hw1A)E76 because G (3-10) conformation "forbidden" or filtered. T0547 84 :PLKV 1hw1A 68 :PTKV T0547 89 :QYP 1hw1A 73 :NFW Number of specific fragments extracted= 2 number of extra gaps= 2 total=84983 # 1xccA.84.37 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)P84 (1xccA)S38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1xccA)F43 because L (left) conformation "forbidden" or filtered. T0547 85 :LKVN 1xccA 39 :HPND T0547 90 :YPG 1xccA 44 :TPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=84985 # 2fqxA.84.67 read from T0547.t06.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)P84 (2fqxA)A83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K86 (2fqxA)G85 because S (epsilon) conformation "forbidden" or filtered. T0547 85 :L 2fqxA 84 :C T0547 87 :VNQYPG 2fqxA 86 :SFLVEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=84987 # 1ta0A.84.53 read from T0547.t06.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)P84 (1ta0A)V129 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1ta0A 130 :LKRPHVDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=84988 # 1ow1A.84.108 read from T0547.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0547)N88 (1ow1A)G3582 because Y (epsilon') conformation "forbidden" or filtered. T0547 84 :PLKV 1ow1A 3578 :ALPC T0547 89 :QYPG 1ow1A 3583 :RDQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=84990 # 1qwgA.84.18 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)V87 (1qwgA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 84 :PLK 1qwgA 19 :LDK T0547 88 :NQYPG 1qwgA 23 :LPPKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=84992 # 1zc6A.84.81 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)P84 (1zc6A)G82 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P91 (1zc6A)R89 because T (delta_L) conformation "forbidden" or filtered. T0547 85 :LKVNQY 1zc6A 83 :LSGVHN T0547 92 :G 1zc6A 90 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=84994 # 1vd6A.84.99 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)V87 because of BadResidue code BAD_PEPTIDE in next template residue (1vd6A)F104 Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)F104 Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)P105 Warning: unaligning (T0547)Y90 because of BadResidue code BAD_PEPTIDE at template residue (1vd6A)G106 Warning: unaligning (T0547)P91 (1vd6A)L107 because G (3-10) conformation "forbidden" or filtered. T0547 84 :PLK 1vd6A 100 :ELK T0547 92 :G 1vd6A 108 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=84996 # 1ox0A.84.208 read from T0547.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)P84 (1ox0A)G190 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1ox0A 191 :TEASITPF Number of specific fragments extracted= 1 number of extra gaps= 1 total=84997 # 1yzxA.84.12 read from T0547.t06.many.frag # found chain 1yzxA in template set Warning: unaligning (T0547)P84 (1yzxA)D13 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1yzxA 14 :VLSPYSWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=84998 # 1fvkA.84.23 read from T0547.t06.many.frag # found chain 1fvkA in training set Warning: unaligning (T0547)P84 (1fvkA)E24 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1fvkA 25 :FFSFFCPH Number of specific fragments extracted= 1 number of extra gaps= 1 total=84999 # 1v4vA.84.38 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)P84 (1v4vA)L39 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1v4vA 40 :LTGQHREQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=85000 # 1xeaA.84.29 read from T0547.t06.many.frag # found chain 1xeaA in template set Warning: unaligning (T0547)N88 (1xeaA)T34 because Y (epsilon') conformation "forbidden" or filtered. T0547 84 :PLKV 1xeaA 30 :LVLC T0547 89 :QYPG 1xeaA 35 :RNPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=85002 # 1izcA.84.45 read from T0547.t06.many.frag # found chain 1izcA in training set Warning: unaligning (T0547)P84 (1izcA)V46 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1izcA 47 :AHGIPSTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=85003 # 1pjr.84.30 read from T0547.t06.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)K86 (1pjr)A33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (1pjr)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1pjr)G36 because L (left) conformation "forbidden" or filtered. T0547 84 :PL 1pjr 31 :AG T0547 88 :N 1pjr 35 :S T0547 90 :YPG 1pjr 37 :KTR Number of specific fragments extracted= 3 number of extra gaps= 2 total=85006 # 1zpdA.84.22 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)P84 (1zpdA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :LKVNQYPG 1zpdA 24 :VAGDYNLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=85007 # 7odcA.85.67 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 85 :LKVNQYPGF 7odcA 68 :VKCNDSRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85008 # 1knwA.85.52 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 85 :LKVNQYPGF 1knwA 53 :QKACSNIHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85009 # 1vbkA.85.52 read from T0547.t06.many.frag # found chain 1vbkA in template set T0547 85 :LKVNQYPGF 1vbkA 53 :VKTNSPKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85010 # 1ryoA.85.39 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 85 :LKVNQYPGF 1ryoA 40 :VKKASYLDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=85011 # 2f2hA.85.241 read from T0547.t06.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)K86 (2f2hA)D243 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 85 :L 2f2hA 242 :I T0547 87 :V 2f2hA 244 :G T0547 89 :QYPGF 2f2hA 246 :TPKAV Number of specific fragments extracted= 3 number of extra gaps= 2 total=85014 # 1zhvA.85.105 read from T0547.t06.many.frag # found chain 1zhvA in training set T0547 85 :LKVNQYPGF 1zhvA 107 :VRSNDLEKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=85015 # 1t8tA.85.24 read from T0547.t06.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE at template residue (1t8tA)V160 Warning: unaligning (T0547)Q89 (1t8tA)G164 because T (delta_L) conformation "forbidden" or filtered. T0547 86 :KVN 1t8tA 161 :KKG T0547 90 :YPGF 1t8tA 165 :TRAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=85017 # 1v5vA.85.155 read from T0547.t06.many.frag # found chain 1v5vA in training set Warning: unaligning (T0547)V87 (1v5vA)G158 because S (epsilon) conformation "forbidden" or filtered. T0547 85 :LK 1v5vA 156 :VQ T0547 88 :NQYPGF 1v5vA 159 :PKARDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85019 # 1q9jA.85.122 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)Q89 (1q9jA)A127 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :LKVN 1q9jA 123 :HHCM T0547 90 :YPGF 1q9jA 128 :DGHH Number of specific fragments extracted= 2 number of extra gaps= 1 total=85021 # 1ua4A.85.35 read from T0547.t06.many.frag # found chain 1ua4A in template set Warning: unaligning (T0547)Q89 (1ua4A)D40 because E (beta_S) conformation "forbidden" or filtered. T0547 85 :LKVN 1ua4A 36 :IKYL T0547 90 :YPGF 1ua4A 41 :SKDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85023 # 1xccA.85.38 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)Q89 (1xccA)F43 because L (left) conformation "forbidden" or filtered. T0547 85 :LKVN 1xccA 39 :HPND T0547 90 :YPGF 1xccA 44 :TPVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=85025 # 1gqiA.85.111 read from T0547.t06.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)K86 (1gqiA)A117 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G92 (1gqiA)G123 because H (helix) conformation "forbidden" or filtered. T0547 85 :L 1gqiA 116 :V T0547 87 :VNQYP 1gqiA 118 :ANSDV T0547 93 :F 1gqiA 124 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=85028 # 2cvbA.85.39 read from T0547.t06.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)K86 (2cvbA)M41 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :L 2cvbA 40 :F T0547 87 :VNQYPGF 2cvbA 42 :CNHCPYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=85030 # 1o08A.85.43 read from T0547.t06.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)V87 (1o08A)G1046 because T (delta_L) conformation "forbidden" or filtered. T0547 85 :LK 1o08A 1044 :LK T0547 88 :NQYPGF 1o08A 1047 :VSREDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=85032 # 1qwgA.85.19 read from T0547.t06.many.frag # found chain 1qwgA in training set T0547 85 :LKVNQYPGF 1qwgA 20 :DKGLPPKFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85033 # 2fqxA.85.68 read from T0547.t06.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)K86 (2fqxA)G85 because S (epsilon) conformation "forbidden" or filtered. T0547 85 :L 2fqxA 84 :C T0547 87 :VNQYPGF 2fqxA 86 :SFLVEAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=85035 # 1qhxA.85.10 read from T0547.t06.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)V87 (1qhxA)S13 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1qhxA)G15 because T (delta_L) conformation "forbidden" or filtered. T0547 85 :LK 1qhxA 11 :GS T0547 88 :N 1qhxA 14 :A T0547 90 :YPGF 1qhxA 16 :KSGI Number of specific fragments extracted= 3 number of extra gaps= 2 total=85038 # 1hw1A.85.68 read from T0547.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0547)N88 (1hw1A)N72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G92 (1hw1A)E76 because G (3-10) conformation "forbidden" or filtered. T0547 85 :LKV 1hw1A 69 :TKV T0547 89 :QYP 1hw1A 73 :NFW T0547 93 :F 1hw1A 77 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=85041 # 1yq2A.85.368 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)L85 because of BadResidue code BAD_PEPTIDE in next template residue (1yq2A)H369 Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (1yq2A)H369 T0547 87 :VNQYPGF 1yq2A 370 :YPPHPRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=85042 # 1ta0A.85.54 read from T0547.t06.many.frag # found chain 1ta0A in template set T0547 85 :LKVNQYPGF 1ta0A 130 :LKRPHVDEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=85043 # 1ox0A.85.209 read from T0547.t06.many.frag # found chain 1ox0A in training set T0547 85 :LKVNQYPGF 1ox0A 191 :TEASITPFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85044 # 1zpdA.85.23 read from T0547.t06.many.frag # found chain 1zpdA in template set T0547 85 :LKVNQYPGF 1zpdA 24 :VAGDYNLVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85045 # 1izcA.85.46 read from T0547.t06.many.frag # found chain 1izcA in training set T0547 85 :LKVNQYPGF 1izcA 47 :AHGIPSTFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85046 # 1o8xA.85.34 read from T0547.t06.many.frag # found chain 1o8xA in training set Warning: unaligning (T0547)K86 (1o8xA)S36 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :L 1o8xA 35 :F T0547 87 :VNQYPGF 1o8xA 37 :ASWCPPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=85048 # 1svmA.85.29 read from T0547.t06.many.frag # found chain 1svmA in template set Warning: unaligning (T0547)K86 (1svmA)K281 because L (left) conformation "forbidden" or filtered. T0547 85 :L 1svmA 280 :T T0547 87 :VNQYPGF 1svmA 282 :CDDVLLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85050 # 1v4vA.85.39 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)K86 (1v4vA)T41 because G (3-10) conformation "forbidden" or filtered. T0547 85 :L 1v4vA 40 :L T0547 87 :VNQYPGF 1v4vA 42 :GQHREQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85052 # 1zjcA.85.33 read from T0547.t06.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)K86 (1zjcA)S32 because Y (epsilon') conformation "forbidden" or filtered. T0547 85 :L 1zjcA 31 :R T0547 87 :VNQYPGF 1zjcA 33 :SVETLEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85054 # 1fyeA.85.67 read from T0547.t06.many.frag # found chain 1fyeA in training set T0547 85 :LKVNQYPGF 1fyeA 68 :HRVADPLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85055 # 1yzxA.85.13 read from T0547.t06.many.frag # found chain 1yzxA in template set T0547 85 :LKVNQYPGF 1yzxA 14 :VLSPYSWLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85056 # 1pmi.85.108 read from T0547.t06.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)Q89 (1pmi)P114 because P (beta_P) conformation "forbidden" or filtered. T0547 85 :LKVN 1pmi 110 :IQAH T0547 90 :YPGF 1pmi 115 :DKKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85058 # 1knwA.86.53 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 86 :KVNQYPGFV 1knwA 54 :KACSNIHIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85059 # 7odcA.86.68 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 86 :KVNQYPGFV 7odcA 69 :KCNDSRAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85060 # 1vbkA.86.53 read from T0547.t06.many.frag # found chain 1vbkA in template set T0547 86 :KVNQYPGFV 1vbkA 54 :KTNSPKEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85061 # 1zhvA.86.106 read from T0547.t06.many.frag # found chain 1zhvA in training set T0547 86 :KVNQYPGFV 1zhvA 108 :RSNDLEKTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85062 # 2f2hA.86.242 read from T0547.t06.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 86 :KV 2f2hA 243 :DG T0547 89 :QYPGFV 2f2hA 246 :TPKAVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85064 # 1t8tA.86.25 read from T0547.t06.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)Q89 (1t8tA)G164 because T (delta_L) conformation "forbidden" or filtered. T0547 86 :KVN 1t8tA 161 :KKG T0547 90 :YPGFV 1t8tA 165 :TRALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85066 # 1ua4A.86.36 read from T0547.t06.many.frag # found chain 1ua4A in template set Warning: unaligning (T0547)Q89 (1ua4A)D40 because E (beta_S) conformation "forbidden" or filtered. T0547 86 :KVN 1ua4A 37 :KYL T0547 90 :YPGFV 1ua4A 41 :SKDLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=85068 # 1xccA.86.39 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)Q89 (1xccA)F43 because L (left) conformation "forbidden" or filtered. T0547 86 :KVN 1xccA 40 :PND T0547 90 :YPGFV 1xccA 44 :TPVCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=85070 # 1v5vA.86.156 read from T0547.t06.many.frag # found chain 1v5vA in training set T0547 86 :KVNQYPGFV 1v5vA 157 :QGPKARDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85071 # 1ryoA.86.40 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 86 :KVN 1ryoA 41 :KKA T0547 90 :YPGFV 1ryoA 45 :YLDCI Number of specific fragments extracted= 2 number of extra gaps= 1 total=85073 # 1q9jA.86.123 read from T0547.t06.many.frag # found chain 1q9jA in template set T0547 86 :KVNQYPGFV 1q9jA 124 :HCMADGHHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85074 # 1o08A.86.44 read from T0547.t06.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)V87 (1o08A)G1046 because T (delta_L) conformation "forbidden" or filtered. T0547 86 :K 1o08A 1045 :K T0547 88 :NQYPGFV 1o08A 1047 :VSREDSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85076 # 1qhxA.86.11 read from T0547.t06.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)Q89 (1qhxA)G15 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G92 (1qhxA)G18 because H (helix) conformation "forbidden" or filtered. T0547 86 :KVN 1qhxA 12 :SSA T0547 90 :YP 1qhxA 16 :KS T0547 93 :FV 1qhxA 19 :IV Number of specific fragments extracted= 3 number of extra gaps= 2 total=85079 # 1gqiA.86.112 read from T0547.t06.many.frag # found chain 1gqiA in training set T0547 86 :KVNQYPGFV 1gqiA 117 :AANSDVGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85080 # 1yq2A.86.369 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)K86 because of BadResidue code BAD_PEPTIDE at template residue (1yq2A)H369 T0547 87 :VNQYPGFV 1yq2A 370 :YPPHPRLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=85081 # 1g6sA.86.121 read from T0547.t06.many.frag # found chain 1g6sA in training set Warning: unaligning (T0547)V87 (1g6sA)E123 because G (3-10) conformation "forbidden" or filtered. T0547 86 :K 1g6sA 122 :K T0547 88 :NQYPGFV 1g6sA 124 :RPIGHLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=85083 # 2fqxA.86.69 read from T0547.t06.many.frag # found chain 2fqxA in training set Warning: unaligning (T0547)K86 (2fqxA)G85 because S (epsilon) conformation "forbidden" or filtered. T0547 87 :VNQYPGFV 2fqxA 86 :SFLVEAVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=85084 # 1zpdA.86.24 read from T0547.t06.many.frag # found chain 1zpdA in template set T0547 86 :KVNQYPGFV 1zpdA 25 :AGDYNLVLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85085 # 1qwgA.86.20 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)V87 (1qwgA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (1qwgA)P24 because P (beta_P) conformation "forbidden" or filtered. T0547 86 :K 1qwgA 21 :K T0547 88 :N 1qwgA 23 :L T0547 90 :YPGFV 1qwgA 25 :PKFVE Number of specific fragments extracted= 3 number of extra gaps= 2 total=85088 # 1izcA.86.47 read from T0547.t06.many.frag # found chain 1izcA in training set Warning: unaligning (T0547)V87 (1izcA)G49 because G (3-10) conformation "forbidden" or filtered. T0547 86 :K 1izcA 48 :H T0547 88 :NQYPGFV 1izcA 50 :IPSTFVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=85090 # 2a5yB.86.160 read from T0547.t06.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)V87 (2a5yB)G162 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q89 (2a5yB)G164 because T (delta_L) conformation "forbidden" or filtered. T0547 86 :K 2a5yB 161 :A T0547 88 :N 2a5yB 163 :S T0547 90 :YPGFV 2a5yB 165 :KSVIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=85093 # 1u4bA.86.53 read from T0547.t06.many.frag # found chain 1u4bA in template set T0547 86 :KVNQYPGFV 1u4bA 350 :TALADPQFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85094 # 1ta0A.86.55 read from T0547.t06.many.frag # found chain 1ta0A in template set T0547 86 :KVNQYPGFV 1ta0A 131 :KRPHVDEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85095 # 1wmgA.86.52 read from T0547.t06.many.frag # found chain 1wmgA in template set T0547 86 :KVNQYPGFV 1wmgA 899 :KASPTGVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85096 # 2b20A.86.209 read from T0547.t06.many.frag # found chain 2b20A in template set T0547 86 :KVNQYPGFV 2b20A 207 :QSMPVWPVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85097 # 1pmi.86.109 read from T0547.t06.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)K86 (1pmi)Q111 because Y (epsilon') conformation "forbidden" or filtered. T0547 87 :VNQYPGFV 1pmi 112 :AHPDKKLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85098 # 1v4vA.86.40 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)Q89 (1v4vA)H44 because D (zeta) conformation "forbidden" or filtered. T0547 86 :KVN 1v4vA 41 :TGQ T0547 90 :YPGFV 1v4vA 45 :REQLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=85100 # 1ox0A.86.210 read from T0547.t06.many.frag # found chain 1ox0A in training set T0547 86 :KVNQYPGFV 1ox0A 192 :EASITPFAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85101 # 1he1A.86.29 read from T0547.t06.many.frag # found chain 1he1A in template set Warning: unaligning (T0547)V87 (1he1A)T125 because G (3-10) conformation "forbidden" or filtered. T0547 86 :K 1he1A 124 :A T0547 88 :NQYPGFV 1he1A 126 :LTPEGLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=85103 # 2cvbA.86.40 read from T0547.t06.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)K86 (2cvbA)M41 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V87 (2cvbA)C42 because Y (epsilon') conformation "forbidden" or filtered. T0547 88 :NQYPGFV 2cvbA 43 :NHCPYVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=85104 # 1knwA.87.54 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 87 :VNQYPGFVK 1knwA 55 :ACSNIHILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=85105 # 7odcA.87.69 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N88 (7odcA)N71 because D (zeta) conformation "forbidden" or filtered. T0547 87 :V 7odcA 70 :C T0547 89 :QYPGFVK 7odcA 72 :DSRAIVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=85107 # 1qhxA.87.12 read from T0547.t06.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)V87 (1qhxA)S13 because T (delta_L) conformation "forbidden" or filtered. T0547 88 :NQYPGFVK 1qhxA 14 :AGKSGIVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=85108 # 1zhvA.87.107 read from T0547.t06.many.frag # found chain 1zhvA in training set T0547 87 :VNQYPGFVK 1zhvA 109 :SNDLEKTAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=85109 # 1vbkA.87.54 read from T0547.t06.many.frag # found chain 1vbkA in template set Warning: unaligning (T0547)N88 (1vbkA)N56 because G (3-10) conformation "forbidden" or filtered. T0547 87 :V 1vbkA 55 :T T0547 89 :QYPGFVK 1vbkA 57 :SPKEAAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=85111 # 1xccA.87.40 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)Q89 (1xccA)F43 because L (left) conformation "forbidden" or filtered. T0547 87 :VN 1xccA 41 :ND T0547 90 :YPGFVK 1xccA 44 :TPVCTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=85113 # 2f2hA.87.243 read from T0547.t06.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 87 :V 2f2hA 244 :G T0547 89 :QYPGFVK 2f2hA 246 :TPKAVLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=85115 # 2b20A.87.210 read from T0547.t06.many.frag # found chain 2b20A in template set T0547 87 :VNQYPGFVK 2b20A 208 :SMPVWPVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=85116 # 1yq2A.87.370 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)V87 (1yq2A)Y370 because Y (epsilon') conformation "forbidden" or filtered. T0547 88 :NQYPGFVK 1yq2A 371 :PPHPRLLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=85117 # 1v5vA.87.157 read from T0547.t06.many.frag # found chain 1v5vA in training set T0547 87 :VNQYPGFVK 1v5vA 158 :GPKARDLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85118 # 1ryoA.87.41 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 87 :VN 1ryoA 42 :KA T0547 90 :YPGFVK 1ryoA 45 :YLDCIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=85120 # 1u4bA.87.54 read from T0547.t06.many.frag # found chain 1u4bA in template set T0547 87 :VNQYPGFVK 1u4bA 351 :ALADPQFVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85121 # 1ua4A.87.37 read from T0547.t06.many.frag # found chain 1ua4A in template set T0547 87 :VNQYPGFVK 1ua4A 38 :YLDSKDLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85122 # 1n0qA.87.43 read from T0547.t06.many.frag # found chain 1n0qA in training set Warning: unaligning (T0547)Q89 (1n0qA)G46 because L (left) conformation "forbidden" or filtered. T0547 87 :VN 1n0qA 44 :RN T0547 90 :YPGFVK 1n0qA 47 :HLEVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=85124 # 1izcA.87.48 read from T0547.t06.many.frag # found chain 1izcA in training set T0547 87 :VNQYPGFVK 1izcA 49 :GIPSTFVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85125 # 1t77A.87.90 read from T0547.t06.many.frag # found chain 1t77A in template set T0547 87 :VNQYPGFVK 1t77A 2166 :NFPDPATVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85126 # 1g6sA.87.122 read from T0547.t06.many.frag # found chain 1g6sA in training set T0547 87 :VNQYPGFVK 1g6sA 123 :ERPIGHLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=85127 # 1o08A.87.45 read from T0547.t06.many.frag # found chain 1o08A in training set Warning: unaligning (T0547)V87 (1o08A)G1046 because T (delta_L) conformation "forbidden" or filtered. T0547 88 :NQYPGFVK 1o08A 1047 :VSREDSLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=85128 # 1njrA.87.21 read from T0547.t06.many.frag # found chain 1njrA in template set Warning: unaligning (T0547)N88 (1njrA)D23 because E (beta_S) conformation "forbidden" or filtered. T0547 87 :V 1njrA 22 :C T0547 89 :QYPGFVK 1njrA 24 :TNEVVTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=85130 # 1szwA.87.73 read from T0547.t06.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)V87 (1szwA)G52 because T (delta_L) conformation "forbidden" or filtered. T0547 88 :NQYPGFVK 1szwA 53 :CNTRFVAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=85131 # 1t8tA.87.26 read from T0547.t06.many.frag # found chain 1t8tA in template set Warning: unaligning (T0547)Q89 (1t8tA)G164 because T (delta_L) conformation "forbidden" or filtered. T0547 87 :VN 1t8tA 162 :KG T0547 90 :YPGFVK 1t8tA 165 :TRALLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=85133 # 1q9jA.87.124 read from T0547.t06.many.frag # found chain 1q9jA in template set T0547 87 :VNQYPGFVK 1q9jA 125 :CMADGHHGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85134 # 2cfeA.87.129 read from T0547.t06.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)Y90 (2cfeA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 87 :VNQ 2cfeA 130 :VID T0547 91 :PGFVK 2cfeA 134 :MNVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=85136 # 1pmi.87.110 read from T0547.t06.many.frag # found chain 1pmi in training set Warning: unaligning (T0547)Q89 (1pmi)P114 because P (beta_P) conformation "forbidden" or filtered. T0547 87 :VN 1pmi 112 :AH T0547 90 :YPGFVK 1pmi 115 :DKKLGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=85138 # 1ta0A.87.56 read from T0547.t06.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)Q89 (1ta0A)H134 because T (delta_L) conformation "forbidden" or filtered. T0547 87 :VN 1ta0A 132 :RP T0547 90 :YPGFVK 1ta0A 135 :VDEFLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=85140 # 1zpdA.87.25 read from T0547.t06.many.frag # found chain 1zpdA in template set T0547 87 :VNQYPGFVK 1zpdA 26 :GDYNLVLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=85141 # 2bptA.87.128 read from T0547.t06.many.frag # found chain 2bptA in template set Warning: unaligning (T0547)N88 (2bptA)G130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y90 (2bptA)W132 because L (left) conformation "forbidden" or filtered. T0547 87 :V 2bptA 129 :H T0547 89 :Q 2bptA 131 :A T0547 91 :PGFVK 2bptA 133 :PELMK Number of specific fragments extracted= 3 number of extra gaps= 2 total=85144 # 1yacA.87.89 read from T0547.t06.many.frag # found chain 1yacA in training set T0547 87 :VNQYPGFVK 1yacA 90 :AWDNEDFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85145 # 1ox0A.87.211 read from T0547.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)N88 (1ox0A)S194 because G (3-10) conformation "forbidden" or filtered. T0547 87 :V 1ox0A 193 :A T0547 89 :QYPGFVK 1ox0A 195 :ITPFAIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=85147 # 1j5sA.87.63 read from T0547.t06.many.frag # found chain 1j5sA in template set T0547 87 :VNQYPGFVK 1j5sA 52 :GATDHYVWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85148 # 1knwA.88.55 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 88 :NQYPGFVKN 1knwA 56 :CSNIHILRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85149 # 7odcA.88.70 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 88 :NQYPGFVKN 7odcA 71 :NDSRAIVST Number of specific fragments extracted= 1 number of extra gaps= 0 total=85150 # 1qhxA.88.13 read from T0547.t06.many.frag # found chain 1qhxA in template set T0547 88 :NQYPGFVKN 1qhxA 14 :AGKSGIVRC Number of specific fragments extracted= 1 number of extra gaps= 0 total=85151 # 1n0qA.88.44 read from T0547.t06.many.frag # found chain 1n0qA in training set Warning: unaligning (T0547)Q89 (1n0qA)G46 because L (left) conformation "forbidden" or filtered. T0547 88 :N 1n0qA 45 :N T0547 90 :YPGFVKN 1n0qA 47 :HLEVVKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85153 # 1zhvA.88.108 read from T0547.t06.many.frag # found chain 1zhvA in training set T0547 88 :NQYPGFVKN 1zhvA 110 :NDLEKTADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85154 # 1njrA.88.22 read from T0547.t06.many.frag # found chain 1njrA in template set T0547 88 :NQYPGFVKN 1njrA 23 :DTNEVVTNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85155 # 1yq2A.88.371 read from T0547.t06.many.frag # found chain 1yq2A in template set T0547 88 :NQYPGFVKN 1yq2A 371 :PPHPRLLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85156 # 1vkyA.88.189 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 88 :NQYPGFVKN 1vkyA 178 :HFTPELIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85157 # 1xccA.88.41 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)Q89 (1xccA)F43 because L (left) conformation "forbidden" or filtered. T0547 88 :N 1xccA 42 :D T0547 90 :YPGFVKN 1xccA 44 :TPVCTTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=85159 # 1t77A.88.91 read from T0547.t06.many.frag # found chain 1t77A in template set T0547 88 :NQYPGFVKN 1t77A 2167 :FPDPATVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85160 # 1szwA.88.74 read from T0547.t06.many.frag # found chain 1szwA in template set T0547 88 :NQYPGFVKN 1szwA 53 :CNTRFVADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85161 # 2b20A.88.211 read from T0547.t06.many.frag # found chain 2b20A in template set T0547 88 :NQYPGFVKN 2b20A 209 :MPVWPVLTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=85162 # 1u4bA.88.55 read from T0547.t06.many.frag # found chain 1u4bA in template set T0547 88 :NQYPGFVKN 1u4bA 352 :LADPQFVAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=85163 # 2cfeA.88.130 read from T0547.t06.many.frag # found chain 2cfeA in training set T0547 88 :NQYPGFVKN 2cfeA 131 :IDGMNVVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85164 # 1o08A.88.46 read from T0547.t06.many.frag # found chain 1o08A in training set T0547 88 :NQYPGFVKN 1o08A 1047 :VSREDSLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85165 # 1izcA.88.49 read from T0547.t06.many.frag # found chain 1izcA in training set Warning: unaligning (T0547)N88 (1izcA)I50 because P (beta_P) conformation "forbidden" or filtered. T0547 89 :QYPGFVKN 1izcA 51 :PSTFVTKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=85166 # 1ryoA.88.42 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)Q89 (1ryoA)S44 because Y (epsilon') conformation "forbidden" or filtered. T0547 88 :N 1ryoA 43 :A T0547 90 :YPGFVKN 1ryoA 45 :YLDCIRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=85168 # 1ua4A.88.38 read from T0547.t06.many.frag # found chain 1ua4A in template set T0547 88 :NQYPGFVKN 1ua4A 39 :LDSKDLEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=85169 # 1l7dA.88.16 read from T0547.t06.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)Q89 (1l7dA)I18 because Y (epsilon') conformation "forbidden" or filtered. T0547 88 :N 1l7dA 17 :A T0547 90 :YPGFVKN 1l7dA 19 :SPEVVKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=85171 # 2bptA.88.129 read from T0547.t06.many.frag # found chain 2bptA in template set Warning: unaligning (T0547)N88 (2bptA)G130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y90 (2bptA)W132 because L (left) conformation "forbidden" or filtered. T0547 89 :Q 2bptA 131 :A T0547 91 :PGFVKN 2bptA 133 :PELMKI Number of specific fragments extracted= 2 number of extra gaps= 2 total=85173 # 1pmi.88.111 read from T0547.t06.many.frag # found chain 1pmi in training set T0547 88 :NQYPGFVKN 1pmi 113 :HPDKKLGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=85174 # 2f2hA.88.244 read from T0547.t06.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)N88 (2f2hA)P245 because C (cis) conformation "forbidden" or filtered. T0547 89 :QYPGFVKN 2f2hA 246 :TPKAVLDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=85175 # 1vbkA.88.55 read from T0547.t06.many.frag # found chain 1vbkA in template set T0547 88 :NQYPGFVKN 1vbkA 56 :NSPKEAANV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85176 # 1w8sA.88.40 read from T0547.t06.many.frag # found chain 1w8sA in template set T0547 88 :NQYPGFVKN 1w8sA 41 :ADPEYILRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85177 # 1ox0A.88.212 read from T0547.t06.many.frag # found chain 1ox0A in training set T0547 88 :NQYPGFVKN 1ox0A 194 :SITPFAIAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85178 # 1v6sA.88.67 read from T0547.t06.many.frag # found chain 1v6sA in training set T0547 88 :NQYPGFVKN 1v6sA 68 :YSLAPVGEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85179 # 1cy5A.88.19 read from T0547.t06.many.frag # found chain 1cy5A in training set Warning: unaligning (T0547)N88 because of BadResidue code BAD_PEPTIDE in next template residue (1cy5A)K21 Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1cy5A)K21 T0547 90 :YPGFVKN 1cy5A 22 :TSYIMDH Number of specific fragments extracted= 1 number of extra gaps= 1 total=85180 # 1xrjA.88.30 read from T0547.t06.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)Q89 (1xrjA)G32 because T (delta_L) conformation "forbidden" or filtered. T0547 88 :N 1xrjA 31 :S T0547 90 :YPGFVKN 1xrjA 33 :KSSVCAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=85182 1em9A expands to /projects/compbio/data/pdb/1em9.pdb.gz 1em9A:# 1em9A.88.30 read from T0547.t06.many.frag # adding 1em9A to template set # found chain 1em9A in template set T0547 88 :NQYPGFVKN 1em9A 31 :LRSPITMAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85183 # 1z7aA.88.106 read from T0547.t06.many.frag # found chain 1z7aA in training set T0547 88 :NQYPGFVKN 1z7aA 107 :QRNPEVIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85184 # 1knwA.89.56 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 89 :QYPGFVKNL 1knwA 57 :SNIHILRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=85185 # 1n0qA.89.45 read from T0547.t06.many.frag # found chain 1n0qA in training set Warning: unaligning (T0547)Q89 (1n0qA)G46 because L (left) conformation "forbidden" or filtered. T0547 90 :YPGFVKNL 1n0qA 47 :HLEVVKLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=85186 # 7odcA.89.71 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 89 :QYPGFVKNL 7odcA 72 :DSRAIVSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85187 # 1qhxA.89.14 read from T0547.t06.many.frag # found chain 1qhxA in template set T0547 89 :QYPGFVKNL 1qhxA 15 :GKSGIVRCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85188 # 1z7aA.89.107 read from T0547.t06.many.frag # found chain 1z7aA in training set T0547 89 :QYPGFVKNL 1z7aA 108 :RNPEVIRAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=85189 # 1zhvA.89.109 read from T0547.t06.many.frag # found chain 1zhvA in training set T0547 89 :QYPGFVKNL 1zhvA 111 :DLEKTADLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85190 # 2cfeA.89.131 read from T0547.t06.many.frag # found chain 2cfeA in training set T0547 89 :QYPGFVKNL 2cfeA 132 :DGMNVVKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85191 # 1yq2A.89.372 read from T0547.t06.many.frag # found chain 1yq2A in template set T0547 89 :QYPGFVKNL 1yq2A 372 :PHPRLLDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85192 # 1l7dA.89.17 read from T0547.t06.many.frag # found chain 1l7dA in template set T0547 89 :QYPGFVKNL 1l7dA 18 :ISPEVVKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85193 # 2b20A.89.212 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)Q89 (2b20A)P210 because P (beta_P) conformation "forbidden" or filtered. T0547 90 :YPGFVKNL 2b20A 211 :VWPVLTSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=85194 # 1t77A.89.92 read from T0547.t06.many.frag # found chain 1t77A in template set T0547 89 :QYPGFVKNL 1t77A 2168 :PDPATVKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85195 # 2bptA.89.130 read from T0547.t06.many.frag # found chain 2bptA in template set Warning: unaligning (T0547)Y90 (2bptA)W132 because L (left) conformation "forbidden" or filtered. T0547 89 :Q 2bptA 131 :A T0547 91 :PGFVKNL 2bptA 133 :PELMKIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=85197 # 1vkyA.89.190 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 89 :QYPGFVKNL 1vkyA 179 :FTPELIEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85198 # 1izcA.89.50 read from T0547.t06.many.frag # found chain 1izcA in training set T0547 89 :QYPGFVKNL 1izcA 51 :PSTFVTKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85199 # 1ryoA.89.43 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 89 :QYPGFVKNL 1ryoA 44 :SYLDCIRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85200 # 1njrA.89.23 read from T0547.t06.many.frag # found chain 1njrA in template set T0547 89 :QYPGFVKNL 1njrA 24 :TNEVVTNLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=85201 # 1szwA.89.75 read from T0547.t06.many.frag # found chain 1szwA in template set T0547 89 :QYPGFVKNL 1szwA 54 :NTRFVADAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85202 # 1ru3A.89.80 read from T0547.t06.many.frag # found chain 1ru3A in template set T0547 89 :QYPGFVKNL 1ru3A 81 :DMVPILNRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=85203 # 2cwcA.89.103 read from T0547.t06.many.frag # found chain 2cwcA in training set Warning: unaligning (T0547)Q89 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cwcA)A104 T0547 90 :YPGFVKNL 2cwcA 105 :TRRALERY Number of specific fragments extracted= 1 number of extra gaps= 0 total=85204 # 1rqlA.89.106 read from T0547.t06.many.frag # found chain 1rqlA in template set T0547 89 :QYPGFVKNL 1rqlA 107 :AVKEVIASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85205 # 1yxyA.89.36 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 89 :QYPGFVKNL 1yxyA 37 :IMPLMAKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85206 # 1cy5A.89.20 read from T0547.t06.many.frag # found chain 1cy5A in training set Warning: unaligning (T0547)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1cy5A)K21 T0547 90 :YPGFVKNL 1cy5A 22 :TSYIMDHM Number of specific fragments extracted= 1 number of extra gaps= 1 total=85207 # 1lc5A.89.59 read from T0547.t06.many.frag # found chain 1lc5A in training set T0547 89 :QYPGFVKNL 1lc5A 60 :DYFHLHQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85208 # 1w8sA.89.41 read from T0547.t06.many.frag # found chain 1w8sA in template set T0547 89 :QYPGFVKNL 1w8sA 42 :DPEYILRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85209 # 1xrjA.89.31 read from T0547.t06.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)Q89 (1xrjA)G32 because T (delta_L) conformation "forbidden" or filtered. T0547 90 :YPGFVKNL 1xrjA 33 :KSSVCAKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=85210 # 1ua4A.89.39 read from T0547.t06.many.frag # found chain 1ua4A in template set T0547 89 :QYPGFVKNL 1ua4A 40 :DSKDLEERI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85211 # 1u4bA.89.56 read from T0547.t06.many.frag # found chain 1u4bA in template set T0547 89 :QYPGFVKNL 1u4bA 353 :ADPQFVAWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85212 # 1o08A.89.47 read from T0547.t06.many.frag # found chain 1o08A in training set T0547 89 :QYPGFVKNL 1o08A 1048 :SREDSLQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85213 # 1oboA.89.13 read from T0547.t06.many.frag # found chain 1oboA in training set T0547 89 :QYPGFVKNL 1oboA 1014 :KTESVAEII Number of specific fragments extracted= 1 number of extra gaps= 0 total=85214 # 1wwpA.89.54 read from T0547.t06.many.frag # found chain 1wwpA in template set T0547 89 :QYPGFVKNL 1wwpA 55 :SPKGVIRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85215 # 1knwA.90.57 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 90 :YPGFVKNLV 1knwA 58 :NIHILRLMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=85216 # 1n0qA.90.46 read from T0547.t06.many.frag # found chain 1n0qA in training set T0547 90 :YPGFVKNLV 1n0qA 47 :HLEVVKLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85217 # 1z7aA.90.108 read from T0547.t06.many.frag # found chain 1z7aA in training set T0547 90 :YPGFVKNLV 1z7aA 109 :NPEVIRAMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85218 # 1qhxA.90.15 read from T0547.t06.many.frag # found chain 1qhxA in template set T0547 90 :YPGFVKNLV 1qhxA 16 :KSGIVRCLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=85219 # 7odcA.90.72 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 90 :YPGFVKNLV 7odcA 73 :SRAIVSTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85220 # 1zhvA.90.110 read from T0547.t06.many.frag # found chain 1zhvA in training set T0547 90 :YPGFVKNLV 1zhvA 112 :LEKTADLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85221 # 1ru3A.90.81 read from T0547.t06.many.frag # found chain 1ru3A in template set T0547 90 :YPGFVKNLV 1ru3A 82 :MVPILNRMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=85222 # 2cfeA.90.132 read from T0547.t06.many.frag # found chain 2cfeA in training set T0547 90 :YPGFVKNLV 2cfeA 133 :GMNVVKAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85223 # 1l7dA.90.18 read from T0547.t06.many.frag # found chain 1l7dA in template set T0547 90 :YPGFVKNLV 1l7dA 19 :SPEVVKKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85224 # 2bptA.90.131 read from T0547.t06.many.frag # found chain 2bptA in template set Warning: unaligning (T0547)Y90 (2bptA)W132 because L (left) conformation "forbidden" or filtered. T0547 91 :PGFVKNLV 2bptA 133 :PELMKIMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=85225 # 1vkyA.90.191 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 90 :YPGFVKNLV 1vkyA 180 :TPELIEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85226 # 1yxyA.90.37 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 90 :YPGFVKNLV 1yxyA 38 :MPLMAKAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=85227 # 1izcA.90.51 read from T0547.t06.many.frag # found chain 1izcA in training set T0547 90 :YPGFVKNLV 1izcA 52 :STFVTKVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85228 # 1ryoA.90.44 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 90 :YPGFVKNLV 1ryoA 45 :YLDCIRAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85229 # 1t77A.90.93 read from T0547.t06.many.frag # found chain 1t77A in template set T0547 90 :YPGFVKNLV 1t77A 2169 :DPATVKKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85230 # 1njrA.90.24 read from T0547.t06.many.frag # found chain 1njrA in template set T0547 90 :YPGFVKNLV 1njrA 25 :NEVVTNLWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=85231 # 1yq2A.90.373 read from T0547.t06.many.frag # found chain 1yq2A in template set T0547 90 :YPGFVKNLV 1yq2A 373 :HPRLLDLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=85232 # 1szwA.90.76 read from T0547.t06.many.frag # found chain 1szwA in template set T0547 90 :YPGFVKNLV 1szwA 55 :TRFVADALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85233 # 2cwcA.90.104 read from T0547.t06.many.frag # found chain 2cwcA in training set T0547 90 :YPGFVKNLV 2cwcA 105 :TRRALERYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85234 # 1lc5A.90.60 read from T0547.t06.many.frag # found chain 1lc5A in training set T0547 90 :YPGFVKNLV 1lc5A 61 :YFHLHQALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85235 # 1cy5A.90.21 read from T0547.t06.many.frag # found chain 1cy5A in training set T0547 90 :YPGFVKNLV 1cy5A 22 :TSYIMDHMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85236 # 1rqlA.90.107 read from T0547.t06.many.frag # found chain 1rqlA in template set T0547 90 :YPGFVKNLV 1rqlA 108 :VKEVIASLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=85237 # 1g8mA.90.17 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 90 :YPGFVKNLV 1g8mA 18 :LVEFARSLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=85238 # 1w8sA.90.42 read from T0547.t06.many.frag # found chain 1w8sA in template set T0547 90 :YPGFVKNLV 1w8sA 43 :PEYILRLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=85239 # 1ua4A.90.40 read from T0547.t06.many.frag # found chain 1ua4A in template set T0547 90 :YPGFVKNLV 1ua4A 41 :SKDLEERII Number of specific fragments extracted= 1 number of extra gaps= 0 total=85240 # 1vkfA.90.44 read from T0547.t06.many.frag # found chain 1vkfA in training set T0547 90 :YPGFVKNLV 1vkfA 33 :LKFHLKILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85241 # 1z72A.90.12 read from T0547.t06.many.frag # found chain 1z72A in training set Warning: unaligning (T0547)P91 (1z72A)G11 because S (epsilon) conformation "forbidden" or filtered. T0547 90 :Y 1z72A 10 :P T0547 92 :GFVKNLV 1z72A 12 :LTVGELL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85243 # 1q7zA.90.127 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 90 :YPGFVKNLV 1q7zA 128 :FRETVEIMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85244 # 1wwpA.90.55 read from T0547.t06.many.frag # found chain 1wwpA in template set T0547 90 :YPGFVKNLV 1wwpA 56 :PKGVIRLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=85245 # 1u9yA.90.104 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 90 :YPGFVKNLV 1u9yA 105 :IRALAKIYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=85246 # 1n0qA.91.47 read from T0547.t06.many.frag # found chain 1n0qA in training set T0547 91 :PGFVKNLVK 1n0qA 48 :LEVVKLLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85247 # 1knwA.91.58 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 91 :PGFVKNLVK 1knwA 59 :IHILRLMRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85248 # 1z7aA.91.109 read from T0547.t06.many.frag # found chain 1z7aA in training set T0547 91 :PGFVKNLVK 1z7aA 110 :PEVIRAMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85249 # 1qhxA.91.16 read from T0547.t06.many.frag # found chain 1qhxA in template set T0547 91 :PGFVKNLVK 1qhxA 17 :SGIVRCLQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=85250 # 2cfeA.91.133 read from T0547.t06.many.frag # found chain 2cfeA in training set T0547 91 :PGFVKNLVK 2cfeA 134 :MNVVKAIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85251 # 7odcA.91.73 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 91 :PGFVKNLVK 7odcA 74 :RAIVSTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85252 # 1zhvA.91.111 read from T0547.t06.many.frag # found chain 1zhvA in training set T0547 91 :PGFVKNLVK 1zhvA 113 :EKTADLLAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=85253 # 1ru3A.91.82 read from T0547.t06.many.frag # found chain 1ru3A in template set T0547 91 :PGFVKNLVK 1ru3A 83 :VPILNRMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85254 # 1yxyA.91.38 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 91 :PGFVKNLVK 1yxyA 39 :PLMAKAAQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85255 # 2bptA.91.132 read from T0547.t06.many.frag # found chain 2bptA in template set T0547 91 :PGFVKNLVK 2bptA 133 :PELMKIMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=85256 # 1l7dA.91.19 read from T0547.t06.many.frag # found chain 1l7dA in template set T0547 91 :PGFVKNLVK 1l7dA 20 :PEVVKKLVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85257 # 1vkyA.91.192 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 91 :PGFVKNLVK 1vkyA 181 :PELIEKLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85258 # 1rqlA.91.108 read from T0547.t06.many.frag # found chain 1rqlA in template set T0547 91 :PGFVKNLVK 1rqlA 109 :KEVIASLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85259 # 1izcA.91.52 read from T0547.t06.many.frag # found chain 1izcA in training set T0547 91 :PGFVKNLVK 1izcA 53 :TFVTKVLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85260 # 1vkfA.91.45 read from T0547.t06.many.frag # found chain 1vkfA in training set T0547 91 :PGFVKNLVK 1vkfA 34 :KFHLKILKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=85261 # 1t77A.91.94 read from T0547.t06.many.frag # found chain 1t77A in template set T0547 91 :PGFVKNLVK 1t77A 2170 :PATVKKVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=85262 # 1g8mA.91.18 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 91 :PGFVKNLVK 1g8mA 19 :VEFARSLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85263 # 1ryoA.91.45 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 91 :PGFVKNLVK 1ryoA 46 :LDCIRAIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85264 # 1yq2A.91.374 read from T0547.t06.many.frag # found chain 1yq2A in template set T0547 91 :PGFVKNLVK 1yq2A 374 :PRLLDLADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85265 # 1z72A.91.13 read from T0547.t06.many.frag # found chain 1z72A in training set T0547 91 :PGFVKNLVK 1z72A 11 :GLTVGELLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85266 # 1u9yA.91.105 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 91 :PGFVKNLVK 1u9yA 106 :RALAKIYSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=85267 # 1q7zA.91.128 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 91 :PGFVKNLVK 1q7zA 129 :RETVEIMVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85268 # 2cwcA.91.105 read from T0547.t06.many.frag # found chain 2cwcA in training set T0547 91 :PGFVKNLVK 2cwcA 106 :RRALERYAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85269 # 1cy5A.91.22 read from T0547.t06.many.frag # found chain 1cy5A in training set T0547 91 :PGFVKNLVK 1cy5A 23 :SYIMDHMIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=85270 # 1wwpA.91.56 read from T0547.t06.many.frag # found chain 1wwpA in template set T0547 91 :PGFVKNLVK 1wwpA 57 :KGVIRLARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85271 # 1m22A.91.110 read from T0547.t06.many.frag # found chain 1m22A in training set T0547 91 :PGFVKNLVK 1m22A 148 :AYLVRRLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=85272 # 1njrA.91.25 read from T0547.t06.many.frag # found chain 1njrA in template set T0547 91 :PGFVKNLVK 1njrA 26 :EVVTNLWQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85273 # 1szwA.91.77 read from T0547.t06.many.frag # found chain 1szwA in template set T0547 91 :PGFVKNLVK 1szwA 56 :RFVADALAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85274 # 1m1nB.91.161 read from T0547.t06.many.frag # found chain 1m1nB in training set T0547 91 :PGFVKNLVK 1m1nB 163 :NAFINNSKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85275 # 1j24A.91.15 read from T0547.t06.many.frag # found chain 1j24A in training set T0547 91 :PGFVKNLVK 1j24A 16 :SEVVKRLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85276 # 1knwA.92.59 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 92 :GFVKNLVKL 1knwA 60 :HILRLMREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=85277 # 1n0qA.92.48 read from T0547.t06.many.frag # found chain 1n0qA in training set T0547 92 :GFVKNLVKL 1n0qA 49 :EVVKLLLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85278 # 1z7aA.92.110 read from T0547.t06.many.frag # found chain 1z7aA in training set T0547 92 :GFVKNLVKL 1z7aA 111 :EVIRAMVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=85279 # 7odcA.92.74 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 92 :GFVKNLVKL 7odcA 75 :AIVSTLAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85280 # 1ru3A.92.83 read from T0547.t06.many.frag # found chain 1ru3A in template set T0547 92 :GFVKNLVKL 1ru3A 84 :PILNRMRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=85281 # 1qhxA.92.17 read from T0547.t06.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)G92 (1qhxA)G18 because H (helix) conformation "forbidden" or filtered. T0547 93 :FVKNLVKL 1qhxA 19 :IVRCLQSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=85282 # 1zhvA.92.112 read from T0547.t06.many.frag # found chain 1zhvA in training set T0547 92 :GFVKNLVKL 1zhvA 114 :KTADLLANA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85283 # 2bptA.92.133 read from T0547.t06.many.frag # found chain 2bptA in template set T0547 92 :GFVKNLVKL 2bptA 134 :ELMKIMVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=85284 # 2cfeA.92.134 read from T0547.t06.many.frag # found chain 2cfeA in training set T0547 92 :GFVKNLVKL 2cfeA 135 :NVVKAIEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85285 # 1q7zA.92.129 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 92 :GFVKNLVKL 1q7zA 130 :ETVEIMVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85286 # 1yxyA.92.39 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 92 :GFVKNLVKL 1yxyA 40 :LMAKAAQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85287 # 1j24A.92.16 read from T0547.t06.many.frag # found chain 1j24A in training set T0547 92 :GFVKNLVKL 1j24A 17 :EVVKRLKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85288 # 1vkyA.92.193 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 92 :GFVKNLVKL 1vkyA 182 :ELIEKLKKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85289 # 1sbxA.92.69 read from T0547.t06.many.frag # found chain 1sbxA in training set T0547 92 :GFVKNLVKL 1sbxA 156 :DQLEILKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=85290 # 1tqjA.92.20 read from T0547.t06.many.frag # found chain 1tqjA in training set T0547 92 :GFVKNLVKL 1tqjA 21 :EEIKAVDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85291 # 1m22A.92.111 read from T0547.t06.many.frag # found chain 1m22A in training set T0547 92 :GFVKNLVKL 1m22A 149 :YLVRRLRDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85292 # 2bbrA.92.43 read from T0547.t06.many.frag # found chain 2bbrA in training set T0547 92 :GFVKNLVKL 2bbrA 44 :QALCSLSQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=85293 # 1l7dA.92.20 read from T0547.t06.many.frag # found chain 1l7dA in template set T0547 92 :GFVKNLVKL 1l7dA 21 :EVVKKLVGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85294 # 1izcA.92.53 read from T0547.t06.many.frag # found chain 1izcA in training set T0547 92 :GFVKNLVKL 1izcA 54 :FVTKVLAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=85295 # 1gmuA.92.112 read from T0547.t06.many.frag # found chain 1gmuA in training set T0547 92 :GFVKNLVKL 1gmuA 113 :VLDDMLRQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=85296 # 1vkfA.92.46 read from T0547.t06.many.frag # found chain 1vkfA in training set T0547 92 :GFVKNLVKL 1vkfA 35 :FHLKILKDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=85297 # 1rqlA.92.109 read from T0547.t06.many.frag # found chain 1rqlA in template set T0547 92 :GFVKNLVKL 1rqlA 110 :EVIASLRER Number of specific fragments extracted= 1 number of extra gaps= 0 total=85298 # 1ryoA.92.46 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)L100 (1ryoA)N55 because L (left) conformation "forbidden" or filtered. T0547 92 :GFVKNLVK 1ryoA 47 :DCIRAIAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=85299 # 1g8mA.92.19 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 92 :GFVKNLVKL 1g8mA 20 :EFARSLNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85300 # 1wwpA.92.57 read from T0547.t06.many.frag # found chain 1wwpA in template set T0547 92 :GFVKNLVKL 1wwpA 58 :GVIRLAREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85301 # 1u9yA.92.106 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 92 :GFVKNLVKL 1u9yA 107 :ALAKIYSNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85302 # 1z72A.92.14 read from T0547.t06.many.frag # found chain 1z72A in training set T0547 92 :GFVKNLVKL 1z72A 12 :LTVGELLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=85303 # 1j5sA.92.68 read from T0547.t06.many.frag # found chain 1j5sA in template set T0547 92 :GFVKNLVKL 1j5sA 57 :YVWELMRRC Number of specific fragments extracted= 1 number of extra gaps= 0 total=85304 # 1q0rA.92.41 read from T0547.t06.many.frag # found chain 1q0rA in training set T0547 92 :GFVKNLVKL 1q0rA 42 :EFARRLADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85305 # 1yq2A.92.375 read from T0547.t06.many.frag # found chain 1yq2A in template set T0547 92 :GFVKNLVKL 1yq2A 375 :RLLDLADEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=85306 # 1n0qA.93.49 read from T0547.t06.many.frag # found chain 1n0qA in training set T0547 93 :FVKNLVKLG 1n0qA 50 :VVKLLLEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85307 # 1knwA.93.60 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 93 :FVKNLVKLG 1knwA 61 :ILRLMREQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85308 # 1qhxA.93.18 read from T0547.t06.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)G101 (1qhxA)L27 because P (beta_P) conformation "forbidden" or filtered. T0547 93 :FVKNLVKL 1qhxA 19 :IVRCLQSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=85309 # 7odcA.93.75 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 93 :FVKNLVKLG 7odcA 76 :IVSTLAAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85310 # 1z7aA.93.111 read from T0547.t06.many.frag # found chain 1z7aA in training set T0547 93 :FVKNLVKLG 1z7aA 112 :VIRAMVADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85311 # 1zhvA.93.113 read from T0547.t06.many.frag # found chain 1zhvA in training set T0547 93 :FVKNLVKLG 1zhvA 115 :TADLLANAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85312 # 1ru3A.93.84 read from T0547.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0547)G101 (1ru3A)I93 because P (beta_P) conformation "forbidden" or filtered. T0547 93 :FVKNLVKL 1ru3A 85 :ILNRMRAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=85313 # 2bptA.93.134 read from T0547.t06.many.frag # found chain 2bptA in template set T0547 93 :FVKNLVKLG 2bptA 135 :LMKIMVDNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=85314 # 1j24A.93.17 read from T0547.t06.many.frag # found chain 1j24A in training set T0547 93 :FVKNLVKLG 1j24A 18 :VVKRLKLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85315 # 2cfeA.93.135 read from T0547.t06.many.frag # found chain 2cfeA in training set T0547 93 :FVKNLVKLG 2cfeA 136 :VVKAIEAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85316 # 1m22A.93.112 read from T0547.t06.many.frag # found chain 1m22A in training set T0547 93 :FVKNLVKLG 1m22A 150 :LVRRLRDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85317 # 1yxyA.93.40 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 93 :FVKNLVKLG 1yxyA 41 :MAKAAQEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85318 # 1q7zA.93.130 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 93 :FVKNLVKLG 1q7zA 131 :TVEIMVEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85319 # 1sbxA.93.70 read from T0547.t06.many.frag # found chain 1sbxA in training set T0547 93 :FVKNLVKLG 1sbxA 157 :QLEILKVMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85320 # 2bbrA.93.44 read from T0547.t06.many.frag # found chain 2bbrA in training set T0547 93 :FVKNLVKLG 2bbrA 45 :ALCSLSQQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=85321 # 1vkyA.93.194 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 93 :FVKNLVKLG 1vkyA 183 :LIEKLKKKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85322 # 1j5sA.93.69 read from T0547.t06.many.frag # found chain 1j5sA in template set T0547 93 :FVKNLVKLG 1j5sA 58 :VWELMRRCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85323 # 1vkfA.93.47 read from T0547.t06.many.frag # found chain 1vkfA in training set T0547 93 :FVKNLVKLG 1vkfA 36 :HLKILKDRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85324 # 1gmuA.93.113 read from T0547.t06.many.frag # found chain 1gmuA in training set T0547 93 :FVKNLVKLG 1gmuA 114 :LDDMLRQFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85325 # 1rqlA.93.110 read from T0547.t06.many.frag # found chain 1rqlA in template set T0547 93 :FVKNLVKLG 1rqlA 111 :VIASLRERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85326 # 1g8mA.93.20 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 93 :FVKNLVKLG 1g8mA 21 :FARSLNALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85327 # 1tqjA.93.21 read from T0547.t06.many.frag # found chain 1tqjA in training set T0547 93 :FVKNLVKLG 1tqjA 22 :EIKAVDEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85328 # 1t77A.93.96 read from T0547.t06.many.frag # found chain 1t77A in template set T0547 93 :FVKNLVKLG 1t77A 2172 :TVKKVVNFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85329 # 1wwpA.93.58 read from T0547.t06.many.frag # found chain 1wwpA in template set T0547 93 :FVKNLVKLG 1wwpA 59 :VIRLAREVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85330 # 1jr2A.93.123 read from T0547.t06.many.frag # found chain 1jr2A in template set T0547 93 :FVKNLVKLG 1jr2A 103 :TASLVSKIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85331 # 1l7dA.93.21 read from T0547.t06.many.frag # found chain 1l7dA in template set T0547 93 :FVKNLVKLG 1l7dA 22 :VVKKLVGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85332 # 1nox.93.61 read from T0547.t06.many.frag # found chain 1nox in training set T0547 93 :FVKNLVKLG 1nox 62 :TKRALREAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85333 # 1m1nB.93.163 read from T0547.t06.many.frag # found chain 1m1nB in training set T0547 93 :FVKNLVKLG 1m1nB 165 :FINNSKKEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85334 # 1q0rA.93.42 read from T0547.t06.many.frag # found chain 1q0rA in training set T0547 93 :FVKNLVKLG 1q0rA 43 :FARRLADGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85335 # 1y3nA.93.30 read from T0547.t06.many.frag # found chain 1y3nA in template set T0547 93 :FVKNLVKLG 1y3nA 31 :VAREVARLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=85336 # 1n0qA.94.50 read from T0547.t06.many.frag # found chain 1n0qA in training set T0547 94 :VKNLVKLGK 1n0qA 51 :VKLLLEAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85337 # 1ru3A.94.85 read from T0547.t06.many.frag # found chain 1ru3A in template set T0547 94 :VKNLVKLGK 1ru3A 86 :LNRMRAQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85338 # 1qhxA.94.19 read from T0547.t06.many.frag # found chain 1qhxA in template set T0547 94 :VKNLVKLGK 1qhxA 20 :VRCLQSVLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=85339 # 1knwA.94.61 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K102 (1knwA)V70 because P (beta_P) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1knwA 62 :LRLMREQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85340 # 1tqjA.94.22 read from T0547.t06.many.frag # found chain 1tqjA in training set Warning: unaligning (T0547)K102 (1tqjA)A31 because P (beta_P) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1tqjA 23 :IKAVDEAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85341 # 1m22A.94.113 read from T0547.t06.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)K102 (1m22A)A159 because P (beta_P) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1m22A 151 :VRRLRDAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85342 # 1z7aA.94.112 read from T0547.t06.many.frag # found chain 1z7aA in training set T0547 94 :VKNLVKLGK 1z7aA 113 :IRAMVADGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=85343 # 1yxyA.94.41 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 94 :VKNLVKLGK 1yxyA 42 :AKAAQEAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85344 # 1q7zA.94.131 read from T0547.t06.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)K102 (1q7zA)V140 because P (beta_P) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1q7zA 132 :VEIMVEEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85345 # 7odcA.94.76 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 94 :VKNLVKLGK 7odcA 77 :VSTLAAIGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=85346 # 2bbrA.94.45 read from T0547.t06.many.frag # found chain 2bbrA in training set T0547 94 :VKNLVKLGK 2bbrA 46 :LCSLSQQRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85347 # 2bptA.94.135 read from T0547.t06.many.frag # found chain 2bptA in template set Warning: unaligning (T0547)G101 (2bptA)T143 because G (3-10) conformation "forbidden" or filtered. T0547 94 :VKNLVKL 2bptA 136 :MKIMVDN T0547 102 :K 2bptA 144 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=85349 # 1vkyA.94.195 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 94 :VKNLVKLGK 1vkyA 184 :IEKLKKKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85350 # 2cfeA.94.136 read from T0547.t06.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)K102 (2cfeA)S145 because Y (epsilon') conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 2cfeA 137 :VKAIEAEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85351 # 1j5sA.94.70 read from T0547.t06.many.frag # found chain 1j5sA in template set Warning: unaligning (T0547)K102 (1j5sA)V67 because P (beta_P) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1j5sA 59 :WELMRRCG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85352 # 1j24A.94.18 read from T0547.t06.many.frag # found chain 1j24A in training set Warning: unaligning (T0547)K102 (1j24A)V27 because P (beta_P) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1j24A 19 :VKRLKLLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85353 # 1vkfA.94.48 read from T0547.t06.many.frag # found chain 1vkfA in training set T0547 94 :VKNLVKLGK 1vkfA 37 :LKILKDRGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85354 # 1zhvA.94.114 read from T0547.t06.many.frag # found chain 1zhvA in training set T0547 94 :VKNLVKLGK 1zhvA 116 :ADLLANAGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=85355 # 1sbxA.94.71 read from T0547.t06.many.frag # found chain 1sbxA in training set T0547 94 :VKNLVKLGK 1sbxA 158 :LEILKVMGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85356 # 1m1nB.94.164 read from T0547.t06.many.frag # found chain 1m1nB in training set T0547 94 :VKNLVKLGK 1m1nB 166 :INNSKKEGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=85357 # 1t06A.94.52 read from T0547.t06.many.frag # found chain 1t06A in template set T0547 94 :VKNLVKLGK 1t06A 53 :AEELYATGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=85358 # 2bryA.94.55 read from T0547.t06.many.frag # found chain 2bryA in training set T0547 94 :VKNLVKLGK 2bryA 48 :YHKIKAQLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=85359 # 1l7dA.94.22 read from T0547.t06.many.frag # found chain 1l7dA in template set T0547 94 :VKNLVKLGK 1l7dA 23 :VKKLVGLGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=85360 # 1thtA.94.96 read from T0547.t06.many.frag # found chain 1thtA in template set T0547 94 :VKNLVKLGK 1thtA 97 :YHWLQTKGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=85361 # 1rkuA.94.47 read from T0547.t06.many.frag # found chain 1rkuA in training set T0547 94 :VKNLVKLGK 1rkuA 47 :LRILDEHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85362 # 1jr2A.94.124 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)K102 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 T0547 94 :VKNLVKLG 1jr2A 104 :ASLVSKIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85363 # 1wehA.94.48 read from T0547.t06.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)K102 (1wehA)G57 because P (beta_P) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1wehA 49 :ARGVKAKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85364 # 1xgkA.94.21 read from T0547.t06.many.frag # found chain 1xgkA in training set T0547 94 :VKNLVKLGK 1xgkA 22 :IRVAAAVGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=85365 # 1rqlA.94.111 read from T0547.t06.many.frag # found chain 1rqlA in template set Warning: unaligning (T0547)K102 (1rqlA)I120 because P (beta_P) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1rqlA 112 :IASLRERG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85366 # 1szwA.94.80 read from T0547.t06.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)K102 (1szwA)K67 because L (left) conformation "forbidden" or filtered. T0547 94 :VKNLVKLG 1szwA 59 :ADALAKFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=85367 # 1j5sA.95.71 read from T0547.t06.many.frag # found chain 1j5sA in template set T0547 95 :KNLVKLGKD 1j5sA 60 :ELMRRCGVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=85368 # 1tqjA.95.23 read from T0547.t06.many.frag # found chain 1tqjA in training set T0547 95 :KNLVKLGKD 1tqjA 24 :KAVDEAGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=85369 # 1ru3A.95.86 read from T0547.t06.many.frag # found chain 1ru3A in template set T0547 95 :KNLVKLGKD 1ru3A 87 :NRMRAQIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=85370 # 1n0qA.95.51 read from T0547.t06.many.frag # found chain 1n0qA in training set T0547 95 :KNLVKLGKD 1n0qA 52 :KLLLEAGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=85371 # 1m22A.95.114 read from T0547.t06.many.frag # found chain 1m22A in training set T0547 95 :KNLVKLGKD 1m22A 152 :RRLRDAGAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85372 # 1q7zA.95.132 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 95 :KNLVKLGKD 1q7zA 133 :EIMVEEGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=85373 # 1qhxA.95.20 read from T0547.t06.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)G101 (1qhxA)L27 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKL 1qhxA 21 :RCLQSV T0547 102 :KD 1qhxA 28 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=85375 # 1yxyA.95.42 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 95 :KNLVKLGKD 1yxyA 43 :KAAQEAGAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85376 # 2bptA.95.136 read from T0547.t06.many.frag # found chain 2bptA in template set Warning: unaligning (T0547)G101 (2bptA)T143 because G (3-10) conformation "forbidden" or filtered. T0547 95 :KNLVKL 2bptA 137 :KIMVDN T0547 102 :KD 2bptA 144 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=85378 # 1vkyA.95.196 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 95 :KNLVKLGKD 1vkyA 185 :EKLKKKGVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=85379 # 2cfeA.95.137 read from T0547.t06.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)G101 (2cfeA)G144 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (2cfeA)S145 because Y (epsilon') conformation "forbidden" or filtered. T0547 95 :KNLVKL 2cfeA 138 :KAIEAE T0547 103 :D 2cfeA 146 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=85381 # 1j24A.95.19 read from T0547.t06.many.frag # found chain 1j24A in training set T0547 95 :KNLVKLGKD 1j24A 20 :KRLKLLGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85382 # 1jr2A.95.125 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)K102 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 Warning: unaligning (T0547)D103 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)D113 T0547 95 :KNLVKLG 1jr2A 105 :SLVSKIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85383 # 1ei6A.95.31 read from T0547.t06.many.frag # found chain 1ei6A in template set T0547 95 :KNLVKLGKD 1ei6A 33 :NQAIQAGQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85384 # 1zhvA.95.115 read from T0547.t06.many.frag # found chain 1zhvA in training set T0547 95 :KNLVKLGKD 1zhvA 117 :DLLANAGHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=85385 # 2bryA.95.56 read from T0547.t06.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)D103 (2bryA)Y57 because Y (epsilon') conformation "forbidden" or filtered. T0547 95 :KNLVKLGK 2bryA 49 :HKIKAQLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=85386 # 1knwA.95.62 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)D103 (1knwA)K71 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKLGK 1knwA 63 :RLMREQGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=85387 # 2bbrA.95.46 read from T0547.t06.many.frag # found chain 2bbrA in training set T0547 95 :KNLVKLGKD 2bbrA 47 :CSLSQQRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85388 # 1xgkA.95.22 read from T0547.t06.many.frag # found chain 1xgkA in training set T0547 95 :KNLVKLGKD 1xgkA 23 :RVAAAVGHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=85389 # 1tzvA.95.62 read from T0547.t06.many.frag # found chain 1tzvA in training set Warning: unaligning (T0547)G101 (1tzvA)L69 because E (beta_S) conformation "forbidden" or filtered. T0547 95 :KNLVKL 1tzvA 63 :DLISRY T0547 102 :KD 1tzvA 70 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=85391 # 1thtA.95.97 read from T0547.t06.many.frag # found chain 1thtA in template set T0547 95 :KNLVKLGKD 1thtA 98 :HWLQTKGTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=85392 # 1ct5A.95.55 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)K102 (1ct5A)V64 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKLG 1ct5A 57 :QILYDHG T0547 103 :D 1ct5A 65 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=85394 # 1rkuA.95.48 read from T0547.t06.many.frag # found chain 1rkuA in training set T0547 95 :KNLVKLGKD 1rkuA 48 :RILDEHGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85395 # 1yzyA.95.204 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)G101 (1yzyA)V210 because G (3-10) conformation "forbidden" or filtered. T0547 95 :KNLVKL 1yzyA 204 :EVLAEA T0547 102 :KD 1yzyA 211 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=85397 # 1rqlA.95.112 read from T0547.t06.many.frag # found chain 1rqlA in template set T0547 95 :KNLVKLGKD 1rqlA 113 :ASLRERGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85398 # 1byi.95.23 read from T0547.t06.many.frag # found chain 1byi in training set T0547 95 :KNLVKLGKD 1byi 24 :QAAKAAGYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=85399 # 1t77A.95.98 read from T0547.t06.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)D103 (1t77A)R2182 because N (gamma') conformation "forbidden" or filtered. T0547 95 :KNLVKLGK 1t77A 2174 :KKVVNFLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=85400 # 1vkfA.95.49 read from T0547.t06.many.frag # found chain 1vkfA in training set Warning: unaligning (T0547)K102 (1vkfA)K45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (1vkfA)T46 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKLG 1vkfA 38 :KILKDRG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85401 # 1mla.95.74 read from T0547.t06.many.frag # found chain 1mla in training set Warning: unaligning (T0547)K102 (1mla)G82 because P (beta_P) conformation "forbidden" or filtered. T0547 95 :KNLVKLG 1mla 75 :RVWQQQG T0547 103 :D 1mla 83 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=85403 # 1sbxA.95.72 read from T0547.t06.many.frag # found chain 1sbxA in training set T0547 95 :KNLVKLGKD 1sbxA 159 :EILKVMGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85404 # 1j5sA.96.72 read from T0547.t06.many.frag # found chain 1j5sA in template set Warning: unaligning (T0547)K102 (1j5sA)V67 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (1j5sA)S68 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKLG 1j5sA 61 :LMRRCG T0547 104 :Y 1j5sA 69 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=85406 # 1tqjA.96.24 read from T0547.t06.many.frag # found chain 1tqjA in training set T0547 96 :NLVKLGKDY 1tqjA 25 :AVDEAGADW Number of specific fragments extracted= 1 number of extra gaps= 0 total=85407 # 1n0qA.96.52 read from T0547.t06.many.frag # found chain 1n0qA in training set T0547 96 :NLVKLGKDY 1n0qA 53 :LLLEAGADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85408 # 1ru3A.96.87 read from T0547.t06.many.frag # found chain 1ru3A in template set T0547 96 :NLVKLGKDY 1ru3A 88 :RMRAQIKSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85409 # 1z7xW.96.74 read from T0547.t06.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)G101 (1z7xW)L79 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (1z7xW)T81 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKL 1z7xW 74 :CVLQG T0547 102 :K 1z7xW 80 :Q T0547 104 :Y 1z7xW 82 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=85412 # 2bryA.96.57 read from T0547.t06.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)G101 (2bryA)L55 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (2bryA)Y57 because Y (epsilon') conformation "forbidden" or filtered. T0547 96 :NLVKL 2bryA 50 :KIKAQ T0547 102 :K 2bryA 56 :N T0547 104 :Y 2bryA 58 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=85415 # 1mla.96.75 read from T0547.t06.many.frag # found chain 1mla in training set T0547 96 :NLVKLGKDY 1mla 76 :VWQQQGGKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85416 # 1fcqA.96.170 read from T0547.t06.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)G101 (1fcqA)R176 because D (zeta) conformation "forbidden" or filtered. T0547 96 :NLVKL 1fcqA 171 :AAKRM T0547 102 :KDY 1fcqA 177 :PAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=85418 # 1q7zA.96.133 read from T0547.t06.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)Y104 (1q7zA)G142 because Y (epsilon') conformation "forbidden" or filtered. T0547 96 :NLVKLGKD 1q7zA 134 :IMVEEGVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=85419 # 1yzyA.96.205 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)G101 (1yzyA)V210 because G (3-10) conformation "forbidden" or filtered. T0547 96 :NLVKL 1yzyA 205 :VLAEA T0547 102 :KDY 1yzyA 211 :ADF Number of specific fragments extracted= 2 number of extra gaps= 1 total=85421 # 1t77A.96.99 read from T0547.t06.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)K102 (1t77A)P2181 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKLG 1t77A 2175 :KVVNFL T0547 103 :DY 1t77A 2182 :RV Number of specific fragments extracted= 2 number of extra gaps= 1 total=85423 # 1qhxA.96.21 read from T0547.t06.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)G101 (1qhxA)L27 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKL 1qhxA 22 :CLQSV T0547 102 :KDY 1qhxA 28 :PEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=85425 # 2cfeA.96.138 read from T0547.t06.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)K102 (2cfeA)S145 because Y (epsilon') conformation "forbidden" or filtered. T0547 96 :NLVKLG 2cfeA 139 :AIEAEG T0547 103 :DY 2cfeA 146 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=85427 # 2b8nA.96.66 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 96 :NLVKLGKDY 2b8nA 55 :AAYEVLGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85428 # 1r6wA.96.174 read from T0547.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)K102 (1r6wA)N179 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKLG 1r6wA 173 :QFAKYV T0547 103 :DY 1r6wA 180 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=85430 # 1gxjA.96.20 read from T0547.t06.many.frag # found chain 1gxjA in template set T0547 96 :NLVKLGKDY 1gxjA 505 :AVFEEKERF Number of specific fragments extracted= 1 number of extra gaps= 0 total=85431 # 1m22A.96.115 read from T0547.t06.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)D103 (1m22A)V160 because E (beta_S) conformation "forbidden" or filtered. T0547 96 :NLVKLGK 1m22A 153 :RLRDAGA T0547 104 :Y 1m22A 161 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=85433 # 1u8xX.96.46 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 96 :NLVKLGKDY 1u8xX 24 :MLLDHLEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=85434 # 1wbhA.96.59 read from T0547.t06.many.frag # found chain 1wbhA in training set T0547 96 :NLVKLGKDY 1wbhA 59 :AIAKEVPEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85435 # 1byi.96.24 read from T0547.t06.many.frag # found chain 1byi in training set T0547 96 :NLVKLGKDY 1byi 25 :AAKAAGYRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=85436 # 1jr2A.96.126 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)K102 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 Warning: unaligning (T0547)D103 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)D113 Warning: unaligning (T0547)Y104 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)T114 T0547 96 :NLVKLG 1jr2A 106 :LVSKIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85437 # 1vkyA.96.197 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 96 :NLVKLGKDY 1vkyA 186 :KLKKKGVQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=85438 # 2bptA.96.137 read from T0547.t06.many.frag # found chain 2bptA in template set Warning: unaligning (T0547)G101 (2bptA)T143 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (2bptA)G144 because P (beta_P) conformation "forbidden" or filtered. T0547 96 :NLVKL 2bptA 138 :IMVDN T0547 103 :DY 2bptA 145 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=85440 # 2f2bA.96.68 read from T0547.t06.many.frag # found chain 2f2bA in training set Warning: unaligning (T0547)G101 (2f2bA)G74 because H (helix) conformation "forbidden" or filtered. T0547 96 :NLVKL 2f2bA 69 :SIYAL T0547 102 :KDY 2f2bA 75 :NIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=85442 # 1tzvA.96.63 read from T0547.t06.many.frag # found chain 1tzvA in training set Warning: unaligning (T0547)G101 (1tzvA)L69 because E (beta_S) conformation "forbidden" or filtered. T0547 96 :NLVKL 1tzvA 64 :LISRY T0547 102 :KDY 1tzvA 70 :EKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=85444 # 1td6A.96.77 read from T0547.t06.many.frag # found chain 1td6A in template set T0547 96 :NLVKLGKDY 1td6A 66 :RCEEELAAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=85445 # 2cwcA.96.110 read from T0547.t06.many.frag # found chain 2cwcA in training set T0547 96 :NLVKLGKDY 2cwcA 111 :RYAATGDPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=85446 # 1v4aA.96.71 read from T0547.t06.many.frag # found chain 1v4aA in template set T0547 96 :NLVKLGKDY 1v4aA 72 :WLQEALCNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85447 # 1em9A.96.38 read from T0547.t06.many.frag # found chain 1em9A in template set Warning: unaligning (T0547)G101 (1em9A)M44 because G (3-10) conformation "forbidden" or filtered. T0547 96 :NLVKL 1em9A 39 :EVEAL T0547 102 :KDY 1em9A 45 :SSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=85449 # 1vd6A.96.113 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 96 :NLVKLGKDY 1vd6A 114 :RLAALLRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=85450 # 1j5sA.97.73 read from T0547.t06.many.frag # found chain 1j5sA in template set Warning: unaligning (T0547)D103 (1j5sA)S68 because P (beta_P) conformation "forbidden" or filtered. T0547 97 :LVKLGK 1j5sA 62 :MRRCGV T0547 104 :YN 1j5sA 69 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=85452 # 1mla.97.76 read from T0547.t06.many.frag # found chain 1mla in training set T0547 97 :LVKLGKDYN 1mla 77 :WQQQGGKAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=85453 # 1n0qA.97.53 read from T0547.t06.many.frag # found chain 1n0qA in training set T0547 97 :LVKLGKDYN 1n0qA 54 :LLEAGADVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=85454 # 1tqjA.97.25 read from T0547.t06.many.frag # found chain 1tqjA in training set Warning: unaligning (T0547)K102 (1tqjA)A31 because P (beta_P) conformation "forbidden" or filtered. T0547 97 :LVKLG 1tqjA 26 :VDEAG T0547 103 :DYN 1tqjA 32 :DWI Number of specific fragments extracted= 2 number of extra gaps= 1 total=85456 # 1byi.97.25 read from T0547.t06.many.frag # found chain 1byi in training set T0547 97 :LVKLGKDYN 1byi 26 :AKAAGYRTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85457 # 1dg9A.97.62 read from T0547.t06.many.frag # found chain 1dg9A in template set T0547 97 :LVKLGKDYN 1dg9A 63 :LRNHGINTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85458 # 1z7xW.97.75 read from T0547.t06.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)G101 (1z7xW)L79 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (1z7xW)T81 because P (beta_P) conformation "forbidden" or filtered. T0547 97 :LVKL 1z7xW 75 :VLQG T0547 102 :K 1z7xW 80 :Q T0547 104 :YN 1z7xW 82 :PS Number of specific fragments extracted= 3 number of extra gaps= 2 total=85461 # 2bw3A.97.222 read from T0547.t06.many.frag # found chain 2bw3A in template set T0547 97 :LVKLGKDYN 2bw3A 298 :FKKANLQHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=85462 # 1q7zA.97.134 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 97 :LVKLGKDYN 1q7zA 135 :MVEEGVDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85463 # 1fcqA.97.171 read from T0547.t06.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)N105 (1fcqA)N180 because E (beta_S) conformation "forbidden" or filtered. T0547 97 :LVKLGKDY 1fcqA 172 :AKRMRPAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=85464 # 1tjvA.97.97 read from T0547.t06.many.frag # found chain 1tjvA in template set Warning: unaligning (T0547)G101 (1tjvA)I102 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (1tjvA)G103 because S (epsilon) conformation "forbidden" or filtered. T0547 97 :LVKL 1tjvA 98 :LKEL T0547 103 :DYN 1tjvA 104 :DIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=85466 # 1td6A.97.78 read from T0547.t06.many.frag # found chain 1td6A in template set T0547 97 :LVKLGKDYN 1td6A 67 :CEEELAAPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=85467 # 2bryA.97.58 read from T0547.t06.many.frag # found chain 2bryA in training set Warning: unaligning (T0547)G101 (2bryA)L55 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (2bryA)Y57 because Y (epsilon') conformation "forbidden" or filtered. T0547 97 :LVKL 2bryA 51 :IKAQ T0547 102 :K 2bryA 56 :N T0547 104 :YN 2bryA 58 :WS Number of specific fragments extracted= 3 number of extra gaps= 2 total=85470 # 1ib2A.97.149 read from T0547.t06.many.frag # found chain 1ib2A in template set Warning: unaligning (T0547)G101 (1ib2A)V981 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K102 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. T0547 97 :LVKL 1ib2A 977 :CIEC T0547 103 :DYN 1ib2A 983 :PQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=85472 # 1ru3A.97.88 read from T0547.t06.many.frag # found chain 1ru3A in template set T0547 97 :LVKLGKDYN 1ru3A 89 :MRAQIKSEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85473 # 1yzyA.97.206 read from T0547.t06.many.frag # found chain 1yzyA in template set T0547 97 :LVKLGKDYN 1yzyA 206 :LAEAVADFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85474 # 1tzvA.97.64 read from T0547.t06.many.frag # found chain 1tzvA in training set T0547 97 :LVKLGKDYN 1tzvA 65 :ISRYLEKWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=85475 # 2b8nA.97.67 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 97 :LVKLGKDYN 2b8nA 56 :AYEVLGKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85476 # 1jr2A.97.127 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)K102 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 Warning: unaligning (T0547)D103 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)D113 Warning: unaligning (T0547)Y104 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)T114 Warning: unaligning (T0547)N105 (1jr2A)E115 because L (left) conformation "forbidden" or filtered. T0547 97 :LVKLG 1jr2A 107 :VSKIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85477 # 1v4aA.97.72 read from T0547.t06.many.frag # found chain 1v4aA in template set T0547 97 :LVKLGKDYN 1v4aA 73 :LQEALCNVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=85478 # 1u8xX.97.47 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 97 :LVKLGKDYN 1u8xX 25 :LLDHLEEFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=85479 # 1ytlA.97.73 read from T0547.t06.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)Y104 (1ytlA)E81 because G (3-10) conformation "forbidden" or filtered. T0547 97 :LVKLGKD 1ytlA 74 :FIDAGLG T0547 105 :N 1ytlA 82 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=85481 # 2etxA.97.28 read from T0547.t06.many.frag # found chain 2etxA in training set Warning: unaligning (T0547)N105 (2etxA)A1917 because P (beta_P) conformation "forbidden" or filtered. T0547 97 :LVKLGKDY 2etxA 1909 :VLALGGSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=85482 # 2cfeA.97.139 read from T0547.t06.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)N105 (2cfeA)G148 because T (delta_L) conformation "forbidden" or filtered. T0547 97 :LVKLGKDY 2cfeA 140 :IEAEGSGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=85483 # 2f2bA.97.69 read from T0547.t06.many.frag # found chain 2f2bA in training set T0547 97 :LVKLGKDYN 2f2bA 70 :IYALGNISG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85484 # 1r6wA.97.175 read from T0547.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)K102 (1r6wA)N179 because P (beta_P) conformation "forbidden" or filtered. T0547 97 :LVKLG 1r6wA 174 :FAKYV T0547 103 :DYN 1r6wA 180 :PDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=85486 # 2bmfA.97.63 read from T0547.t06.many.frag # found chain 2bmfA in template set Warning: unaligning (T0547)K102 (2bmfA)R236 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (2bmfA)G237 because T (delta_L) conformation "forbidden" or filtered. T0547 97 :LVKLG 2bmfA 231 :MEEAL T0547 104 :YN 2bmfA 238 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=85488 # 1thtA.97.99 read from T0547.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)K102 (1thtA)T105 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1thtA)I108 because E (beta_S) conformation "forbidden" or filtered. T0547 97 :LVKLG 1thtA 100 :LQTKG T0547 103 :DY 1thtA 106 :QN Number of specific fragments extracted= 2 number of extra gaps= 2 total=85490 # 1v4vA.97.51 read from T0547.t06.many.frag # found chain 1v4vA in training set T0547 97 :LVKLGKDYN 1v4vA 52 :LSLFGIQED Number of specific fragments extracted= 1 number of extra gaps= 0 total=85491 # 1vq2A.97.112 read from T0547.t06.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)N105 (1vq2A)E121 because P (beta_P) conformation "forbidden" or filtered. T0547 97 :LVKLGKDY 1vq2A 113 :AAENGSSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=85492 # 1byi.98.26 read from T0547.t06.many.frag # found chain 1byi in training set Warning: unaligning (T0547)K102 (1byi)Y31 because P (beta_P) conformation "forbidden" or filtered. T0547 98 :VKLG 1byi 27 :KAAG T0547 103 :DYNY 1byi 32 :RTAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=85494 # 1j5sA.98.74 read from T0547.t06.many.frag # found chain 1j5sA in template set T0547 98 :VKLGKDYNY 1j5sA 63 :RRCGVSEEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=85495 # 1fcqA.98.172 read from T0547.t06.many.frag # found chain 1fcqA in training set T0547 98 :VKLGKDYNY 1fcqA 173 :KRMRPAANW Number of specific fragments extracted= 1 number of extra gaps= 0 total=85496 # 1mla.98.77 read from T0547.t06.many.frag # found chain 1mla in training set T0547 98 :VKLGKDYNY 1mla 78 :QQQGGKAPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85497 # 1yzyA.98.207 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)G101 (1yzyA)V210 because G (3-10) conformation "forbidden" or filtered. T0547 98 :VKL 1yzyA 207 :AEA T0547 102 :KDYNY 1yzyA 211 :ADFKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85499 # 1ib2A.98.150 read from T0547.t06.many.frag # found chain 1ib2A in template set Warning: unaligning (T0547)G101 (1ib2A)V981 because P (beta_P) conformation "forbidden" or filtered. T0547 98 :VKL 1ib2A 978 :IEC T0547 102 :KDYNY 1ib2A 982 :QPQSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85501 # 1dg9A.98.63 read from T0547.t06.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)D103 (1dg9A)N69 because E (beta_S) conformation "forbidden" or filtered. T0547 98 :VKLGK 1dg9A 64 :RNHGI T0547 104 :YNY 1dg9A 70 :TAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=85503 # 1ytlA.98.74 read from T0547.t06.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)Y104 (1ytlA)E81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1ytlA)K82 because G (3-10) conformation "forbidden" or filtered. T0547 98 :VKLGKD 1ytlA 75 :IDAGLG T0547 106 :Y 1ytlA 83 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=85505 # 2b8nA.98.68 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K102 (2b8nA)G61 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (2b8nA)I64 because P (beta_P) conformation "forbidden" or filtered. T0547 98 :VKLG 2b8nA 57 :YEVL T0547 103 :DY 2b8nA 62 :KK T0547 106 :Y 2b8nA 65 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=85508 # 2bw3A.98.223 read from T0547.t06.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)K102 (2bw3A)L303 because G (3-10) conformation "forbidden" or filtered. T0547 98 :VKLG 2bw3A 299 :KKAN T0547 103 :DYNY 2bw3A 304 :QHRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85510 # 1v4aA.98.73 read from T0547.t06.many.frag # found chain 1v4aA in template set T0547 98 :VKLGKDYNY 1v4aA 74 :QEALCNVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=85511 # 1z7xW.98.76 read from T0547.t06.many.frag # found chain 1z7xW in template set T0547 98 :VKLGKDYNY 1z7xW 76 :LQGLQTPSC Number of specific fragments extracted= 1 number of extra gaps= 0 total=85512 # 1tjvA.98.98 read from T0547.t06.many.frag # found chain 1tjvA in template set Warning: unaligning (T0547)K102 (1tjvA)G103 because S (epsilon) conformation "forbidden" or filtered. T0547 98 :VKLG 1tjvA 99 :KELI T0547 103 :DYNY 1tjvA 104 :DIAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=85514 # 1a8y.98.61 read from T0547.t06.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)G101 (1a8y)L65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1a8y)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 98 :VKL 1a8y 62 :AQV T0547 102 :KDY 1a8y 66 :EDK T0547 106 :Y 1a8y 70 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=85517 # 1td6A.98.79 read from T0547.t06.many.frag # found chain 1td6A in template set Warning: unaligning (T0547)D103 (1td6A)A73 because P (beta_P) conformation "forbidden" or filtered. T0547 98 :VKLGK 1td6A 68 :EEELA T0547 104 :YNY 1td6A 74 :PYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85519 # 1tn6B.98.82 read from T0547.t06.many.frag # found chain 1tn6B in template set T0547 98 :VKLGKDYNY 1tn6B 583 :KRGLRQLTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=85520 # 1r6wA.98.151 read from T0547.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)G101 (1r6wA)I153 because D (zeta) conformation "forbidden" or filtered. T0547 98 :VKL 1r6wA 150 :LEA T0547 102 :KDYNY 1r6wA 154 :PDLHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85522 # 1n0qA.98.54 read from T0547.t06.many.frag # found chain 1n0qA in training set Warning: unaligning (T0547)N105 (1n0qA)N62 because G (3-10) conformation "forbidden" or filtered. T0547 98 :VKLGKDY 1n0qA 55 :LEAGADV T0547 106 :Y 1n0qA 63 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=85524 # 2bmfA.98.64 read from T0547.t06.many.frag # found chain 2bmfA in template set Warning: unaligning (T0547)G101 (2bmfA)L235 because G (3-10) conformation "forbidden" or filtered. T0547 98 :VKL 2bmfA 232 :EEA T0547 102 :KDYNY 2bmfA 236 :RGLPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=85526 # 1dg9A.98.30 read from T0547.t06.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)K102 (1dg9A)I35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1dg9A)N38 because G (3-10) conformation "forbidden" or filtered. T0547 98 :VKLG 1dg9A 31 :TDQN T0547 103 :DY 1dg9A 36 :SD T0547 106 :Y 1dg9A 39 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=85529 # 1hufA.98.64 read from T0547.t06.many.frag # found chain 1hufA in template set Warning: unaligning (T0547)D103 (1hufA)N65 because L (left) conformation "forbidden" or filtered. T0547 98 :VKLGK 1hufA 60 :LSHVA T0547 104 :YNY 1hufA 66 :VVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85531 # 1tzvA.98.65 read from T0547.t06.many.frag # found chain 1tzvA in training set T0547 98 :VKLGKDYNY 1tzvA 66 :SRYLEKWSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85532 # 1u8xX.98.48 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 98 :VKLGKDYNY 1u8xX 26 :LDHLEEFPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85533 # 1tqjA.98.26 read from T0547.t06.many.frag # found chain 1tqjA in training set Warning: unaligning (T0547)K102 (1tqjA)A31 because P (beta_P) conformation "forbidden" or filtered. T0547 98 :VKLG 1tqjA 27 :DEAG T0547 103 :DYNY 1tqjA 32 :DWIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=85535 # 1ogdA.98.84 read from T0547.t06.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)G101 (1ogdA)F88 because N (gamma') conformation "forbidden" or filtered. T0547 98 :VKL 1ogdA 85 :ENL T0547 102 :KDYNY 1ogdA 89 :SEQEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=85537 # 1r6wA.98.176 read from T0547.t06.many.frag # found chain 1r6wA in training set T0547 98 :VKLGKDYNY 1r6wA 175 :AKYVNPDYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=85538 # 1q7zA.98.135 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 98 :VKLGKDYNY 1q7zA 136 :VEEGVDGII Number of specific fragments extracted= 1 number of extra gaps= 0 total=85539 # 1qhxA.98.23 read from T0547.t06.many.frag # found chain 1qhxA in template set Warning: unaligning (T0547)G101 (1qhxA)L27 because P (beta_P) conformation "forbidden" or filtered. T0547 98 :VKL 1qhxA 24 :QSV T0547 102 :KDYNY 1qhxA 28 :PEPWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85541 # 1aep.98.81 read from T0547.t06.many.frag # found chain 1aep in template set T0547 98 :VKLGKDYNY 1aep 82 :NNSIHDAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=85542 # 1tt7A.98.142 read from T0547.t06.many.frag # found chain 1tt7A in template set Warning: unaligning (T0547)D103 (1tt7A)S148 because E (beta_S) conformation "forbidden" or filtered. T0547 98 :VKLGK 1tt7A 143 :EQNGL T0547 104 :YNY 1tt7A 149 :PEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=85544 # 1a8y.99.62 read from T0547.t06.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)G101 (1a8y)L65 because G (3-10) conformation "forbidden" or filtered. T0547 99 :KL 1a8y 63 :QV T0547 102 :KDYNYG 1a8y 66 :EDKGVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=85546 # 1byi.99.27 read from T0547.t06.many.frag # found chain 1byi in training set Warning: unaligning (T0547)K102 (1byi)Y31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1byi)Y36 because E (beta_S) conformation "forbidden" or filtered. T0547 99 :KLG 1byi 28 :AAG T0547 103 :DYNY 1byi 32 :RTAG Number of specific fragments extracted= 2 number of extra gaps= 2 total=85548 # 1r6wA.99.152 read from T0547.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)G101 (1r6wA)I153 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1r6wA)R159 because P (beta_P) conformation "forbidden" or filtered. T0547 99 :KL 1r6wA 151 :EA T0547 102 :KDYNY 1r6wA 154 :PDLHL Number of specific fragments extracted= 2 number of extra gaps= 2 total=85550 # 1ezwA.99.53 read from T0547.t06.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)K102 (1ezwA)S57 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1ezwA)K60 because P (beta_P) conformation "forbidden" or filtered. T0547 99 :KLG 1ezwA 54 :VIT T0547 103 :DY 1ezwA 58 :KI T0547 106 :YG 1ezwA 61 :LG Number of specific fragments extracted= 3 number of extra gaps= 2 total=85553 # 1j5sA.99.75 read from T0547.t06.many.frag # found chain 1j5sA in template set T0547 99 :KLGKDYNYG 1j5sA 64 :RCGVSEEYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85554 # 1yzyA.99.208 read from T0547.t06.many.frag # found chain 1yzyA in template set T0547 99 :KLGKDYNYG 1yzyA 208 :EAVADFKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85555 # 1ytlA.99.75 read from T0547.t06.many.frag # found chain 1ytlA in training set T0547 99 :KLGKDYNYG 1ytlA 76 :DAGLGEKVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=85556 # 1fcqA.99.173 read from T0547.t06.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)G107 (1fcqA)G182 because Y (epsilon') conformation "forbidden" or filtered. T0547 99 :KLGKDYNY 1fcqA 174 :RMRPAANW Number of specific fragments extracted= 1 number of extra gaps= 1 total=85557 # 1dg9A.99.31 read from T0547.t06.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)N105 (1dg9A)N38 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1dg9A)V40 because E (beta_S) conformation "forbidden" or filtered. T0547 99 :KLGKDY 1dg9A 32 :DQNISD T0547 106 :Y 1dg9A 39 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=85559 # 1mla.99.78 read from T0547.t06.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. T0547 99 :KLGKDYNY 1mla 79 :QQGGKAPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=85560 # 1dg9A.99.64 read from T0547.t06.many.frag # found chain 1dg9A in template set T0547 99 :KLGKDYNYG 1dg9A 65 :NHGINTAHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85561 # 1qgoA.99.30 read from T0547.t06.many.frag # found chain 1qgoA in template set Warning: unaligning (T0547)G107 (1qgoA)F39 because E (beta_S) conformation "forbidden" or filtered. T0547 99 :KLGKDYNY 1qgoA 31 :ASCPDRDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=85562 # 1fyeA.99.54 read from T0547.t06.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)N105 (1fyeA)G61 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1fyeA)N63 because N (gamma') conformation "forbidden" or filtered. T0547 99 :KLGKDY 1fyeA 55 :EVLAPL T0547 106 :Y 1fyeA 62 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=85564 # 1ks8A.99.196 read from T0547.t06.many.frag # found chain 1ks8A in training set T0547 99 :KLGKDYNYG 1ks8A 197 :DSITDARNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=85565 # 2b8nA.99.69 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)G107 (2b8nA)K66 because E (beta_S) conformation "forbidden" or filtered. T0547 99 :KLGKDYNY 2b8nA 58 :EVLGKKIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=85566 # 1moq.99.74 read from T0547.t06.many.frag # found chain 1moq in training set Warning: unaligning (T0547)D103 (1moq)G319 because L (left) conformation "forbidden" or filtered. T0547 99 :KLGK 1moq 315 :ESLA T0547 104 :YNYG 1moq 320 :IPCD Number of specific fragments extracted= 2 number of extra gaps= 1 total=85568 # 1tjvA.99.99 read from T0547.t06.many.frag # found chain 1tjvA in template set T0547 99 :KLGKDYNYG 1tjvA 100 :ELIGDIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=85569 # 1z7xW.99.77 read from T0547.t06.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)G107 (1z7xW)K85 because G (3-10) conformation "forbidden" or filtered. T0547 99 :KLGKDYNY 1z7xW 77 :QGLQTPSC Number of specific fragments extracted= 1 number of extra gaps= 1 total=85570 # 2bmfA.99.65 read from T0547.t06.many.frag # found chain 2bmfA in template set Warning: unaligning (T0547)G101 (2bmfA)L235 because G (3-10) conformation "forbidden" or filtered. T0547 99 :KL 2bmfA 233 :EA T0547 102 :KDYNYG 2bmfA 236 :RGLPIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=85572 # 2bw3A.99.224 read from T0547.t06.many.frag # found chain 2bw3A in template set T0547 99 :KLGKDYNYG 2bw3A 300 :KANLQHRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=85573 # 1td6A.99.80 read from T0547.t06.many.frag # found chain 1td6A in template set T0547 99 :KLGKDYNYG 1td6A 69 :EELAAPYLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=85574 1ux5A expands to /projects/compbio/data/pdb/1ux5.pdb.gz 1ux5A:# 1ux5A.99.129 read from T0547.t06.many.frag # adding 1ux5A to template set # found chain 1ux5A in template set Warning: unaligning (T0547)Y104 (1ux5A)Y1484 because G (3-10) conformation "forbidden" or filtered. T0547 99 :KLGKD 1ux5A 1479 :RNYAP T0547 105 :NYG 1ux5A 1485 :STD Number of specific fragments extracted= 2 number of extra gaps= 1 total=85576 # 1dd9A.99.157 read from T0547.t06.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)G101 (1dd9A)N255 because D (zeta) conformation "forbidden" or filtered. T0547 99 :KL 1dd9A 253 :QD T0547 102 :KDYNYG 1dd9A 256 :AEPNRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85578 # 1auoA.99.99 read from T0547.t06.many.frag # found chain 1auoA in training set Warning: unaligning (T0547)G107 (1auoA)I108 because E (beta_S) conformation "forbidden" or filtered. T0547 99 :KLGKDYNY 1auoA 100 :RTGIDASR Number of specific fragments extracted= 1 number of extra gaps= 1 total=85579 # 1dq3A.99.217 read from T0547.t06.many.frag # found chain 1dq3A in template set Warning: unaligning (T0547)G101 (1dq3A)L220 because G (3-10) conformation "forbidden" or filtered. T0547 99 :KL 1dq3A 218 :KL T0547 102 :KDYNYG 1dq3A 221 :EGIDNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=85581 # 1su8A.99.151 read from T0547.t06.many.frag # found chain 1su8A in training set T0547 99 :KLGKDYNYG 1su8A 152 :ADFHEKDTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=85582 # 1ldjA.99.337 read from T0547.t06.many.frag # found chain 1ldjA in template set T0547 99 :KLGKDYNYG 1ldjA 354 :KCGEAALND Number of specific fragments extracted= 1 number of extra gaps= 0 total=85583 # 2b9sB.99.33 read from T0547.t06.many.frag # found chain 2b9sB in template set Warning: unaligning (T0547)D103 (2b9sB)P238 because P (beta_P) conformation "forbidden" or filtered. T0547 99 :KLGK 2b9sB 234 :AQDV T0547 104 :YNYG 2b9sB 239 :INKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=85585 # 1tzvA.99.66 read from T0547.t06.many.frag # found chain 1tzvA in training set T0547 99 :KLGKDYNYG 1tzvA 67 :RYLEKWSLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=85586 # 1ogdA.99.85 read from T0547.t06.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)G101 (1ogdA)F88 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1ogdA)E92 because P (beta_P) conformation "forbidden" or filtered. T0547 99 :KL 1ogdA 86 :NL T0547 102 :KDY 1ogdA 89 :SEQ T0547 106 :YG 1ogdA 93 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=85589 # 1a8y.100.63 read from T0547.t06.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)G101 (1a8y)L65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1a8y)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 100 :L 1a8y 64 :V T0547 102 :KDY 1a8y 66 :EDK T0547 106 :YGL 1a8y 70 :VGF Number of specific fragments extracted= 3 number of extra gaps= 2 total=85592 # 1moq.100.75 read from T0547.t06.many.frag # found chain 1moq in training set Warning: unaligning (T0547)D103 (1moq)G319 because L (left) conformation "forbidden" or filtered. T0547 100 :LGK 1moq 316 :SLA T0547 104 :YNYGL 1moq 320 :IPCDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=85594 # 1vqoI.100.126 read from T0547.t06.many.frag # found chain 1vqoI in template set Warning: unaligning (T0547)N105 (1vqoI)G136 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1vqoI)T138 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :LGKDY 1vqoI 131 :TCTSL T0547 106 :Y 1vqoI 137 :V T0547 108 :L 1vqoI 139 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=85597 # 1dg9A.100.32 read from T0547.t06.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)N105 (1dg9A)N38 because G (3-10) conformation "forbidden" or filtered. T0547 100 :LGKDY 1dg9A 33 :QNISD T0547 106 :YGL 1dg9A 39 :WVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=85599 # 1ezwA.100.54 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 100 :LGKDYNYGL 1ezwA 55 :ITSKIKLGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=85600 # 1byi.100.28 read from T0547.t06.many.frag # found chain 1byi in training set Warning: unaligning (T0547)K102 (1byi)Y31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1byi)A34 because E (beta_S) conformation "forbidden" or filtered. T0547 100 :LG 1byi 29 :AG T0547 103 :DY 1byi 32 :RT T0547 106 :YGL 1byi 35 :GYK Number of specific fragments extracted= 3 number of extra gaps= 2 total=85603 # 1fyeA.100.55 read from T0547.t06.many.frag # found chain 1fyeA in training set T0547 100 :LGKDYNYGL 1fyeA 56 :VLAPLGVNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85604 # 2amlA.100.73 read from T0547.t06.many.frag # found chain 2amlA in training set Warning: unaligning (T0547)G107 (2amlA)T69 because E (beta_S) conformation "forbidden" or filtered. T0547 100 :LGKDYNY 2amlA 62 :NLADVRI T0547 108 :L 2amlA 70 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=85606 # 1yzyA.100.209 read from T0547.t06.many.frag # found chain 1yzyA in template set T0547 100 :LGKDYNYGL 1yzyA 209 :AVADFKLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=85607 # 2b8nA.100.70 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K102 (2b8nA)G61 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (2b8nA)I64 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :LG 2b8nA 59 :VL T0547 103 :DY 2b8nA 62 :KK T0547 106 :YGL 2b8nA 65 :RKG Number of specific fragments extracted= 3 number of extra gaps= 2 total=85610 # 1fcqA.100.174 read from T0547.t06.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)N105 (1fcqA)N180 because E (beta_S) conformation "forbidden" or filtered. T0547 100 :LGKDY 1fcqA 175 :MRPAA T0547 106 :YGL 1fcqA 181 :WGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=85612 # 1r6wA.100.153 read from T0547.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)G107 (1r6wA)R159 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :LGKDYNY 1r6wA 152 :AIPDLHL T0547 108 :L 1r6wA 160 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=85614 # 1ylqA.100.62 read from T0547.t06.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)G101 (1ylqA)F61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1ylqA)E67 because E (beta_S) conformation "forbidden" or filtered. T0547 100 :L 1ylqA 60 :K T0547 102 :KDYNY 1ylqA 62 :FDSPF T0547 108 :L 1ylqA 68 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=85617 # 1qgoA.100.31 read from T0547.t06.many.frag # found chain 1qgoA in template set Warning: unaligning (T0547)G101 (1qgoA)C33 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1qgoA)F39 because E (beta_S) conformation "forbidden" or filtered. T0547 100 :L 1qgoA 32 :S T0547 102 :KDYNY 1qgoA 34 :PDRDL T0547 108 :L 1qgoA 40 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=85620 # 1dd9A.100.158 read from T0547.t06.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)Y106 (1dd9A)R260 because Y (epsilon') conformation "forbidden" or filtered. T0547 100 :LGKDYN 1dd9A 254 :DNAEPN T0547 107 :GL 1dd9A 261 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85622 # 1ux5A.100.130 read from T0547.t06.many.frag # found chain 1ux5A in template set Warning: unaligning (T0547)Y104 (1ux5A)Y1484 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L108 (1ux5A)W1488 because T (delta_L) conformation "forbidden" or filtered. T0547 100 :LGKD 1ux5A 1480 :NYAP T0547 105 :NYG 1ux5A 1485 :STD Number of specific fragments extracted= 2 number of extra gaps= 2 total=85624 # 1mla.100.79 read from T0547.t06.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. T0547 100 :LGKDYNY 1mla 80 :QGGKAPA T0547 108 :L 1mla 88 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=85626 # 1sdiA.100.140 read from T0547.t06.many.frag # found chain 1sdiA in training set Warning: unaligning (T0547)N105 (1sdiA)G146 because Y (epsilon') conformation "forbidden" or filtered. T0547 100 :LGKDY 1sdiA 141 :VISPL T0547 106 :YGL 1sdiA 147 :PRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=85628 # 1auoA.100.100 read from T0547.t06.many.frag # found chain 1auoA in training set Warning: unaligning (T0547)K102 (1auoA)I103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1auoA)I108 because E (beta_S) conformation "forbidden" or filtered. T0547 100 :LG 1auoA 101 :TG T0547 103 :DYNY 1auoA 104 :DASR T0547 108 :L 1auoA 109 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=85631 # 1ytlA.100.76 read from T0547.t06.many.frag # found chain 1ytlA in training set Warning: unaligning (T0547)G107 (1ytlA)N84 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :LGKDYNY 1ytlA 77 :AGLGEKV T0547 108 :L 1ytlA 85 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=85633 # 1jl1A.100.109 read from T0547.t06.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)K102 (1jl1A)G112 because S (epsilon) conformation "forbidden" or filtered. T0547 100 :LG 1jl1A 110 :AL T0547 103 :DYNYGL 1jl1A 113 :QHQIKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=85635 # 1gsoA.100.21 read from T0547.t06.many.frag # found chain 1gsoA in training set T0547 100 :LGKDYNYGL 1gsoA 20 :AQSPLVETV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85636 # 1n2sA.100.18 read from T0547.t06.many.frag # found chain 1n2sA in template set Warning: unaligning (T0547)N105 (1n2sA)G24 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1n2sA)L26 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :LGKDY 1n2sA 19 :SLAPV T0547 106 :Y 1n2sA 25 :N T0547 108 :L 1n2sA 27 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=85639 # 1su8A.100.152 read from T0547.t06.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)Y104 (1su8A)K157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1su8A)P160 because P (beta_P) conformation "forbidden" or filtered. T0547 100 :LGKD 1su8A 153 :DFHE T0547 105 :NY 1su8A 158 :DT T0547 108 :L 1su8A 161 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=85642 # 1v4vA.100.54 read from T0547.t06.many.frag # found chain 1v4vA in training set T0547 100 :LGKDYNYGL 1v4vA 55 :FGIQEDRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=85643 # 1ogdA.100.86 read from T0547.t06.many.frag # found chain 1ogdA in template set Warning: unaligning (T0547)G101 (1ogdA)F88 because N (gamma') conformation "forbidden" or filtered. T0547 100 :L 1ogdA 87 :L T0547 102 :KDYNYGL 1ogdA 89 :SEQEIEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=85645 # 1tjvA.100.100 read from T0547.t06.many.frag # found chain 1tjvA in template set Warning: unaligning (T0547)G101 (1tjvA)I102 because G (3-10) conformation "forbidden" or filtered. T0547 100 :L 1tjvA 101 :L T0547 102 :KDYNYGL 1tjvA 103 :GDIAGKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85647 # 1wer.100.66 read from T0547.t06.many.frag # found chain 1wer in training set Warning: unaligning (T0547)G101 (1wer)E781 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (1wer)E783 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L108 (1wer)F788 because T (delta_L) conformation "forbidden" or filtered. T0547 100 :L 1wer 780 :M T0547 102 :K 1wer 782 :D T0547 104 :YNYG 1wer 784 :ATTL Number of specific fragments extracted= 3 number of extra gaps= 3 total=85650 # 2bw3A.100.225 read from T0547.t06.many.frag # found chain 2bw3A in template set T0547 100 :LGKDYNYGL 2bw3A 301 :ANLQHRLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=85651 # 1esc.100.47 read from T0547.t06.many.frag # found chain 1esc in template set Warning: unaligning (T0547)G107 (1esc)T55 because D (zeta) conformation "forbidden" or filtered. T0547 100 :LGKDYNY 1esc 48 :SLADKGI T0547 108 :L 1esc 56 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=85653 # 1a8y.101.64 read from T0547.t06.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)E109 (1a8y)G73 because Y (epsilon') conformation "forbidden" or filtered. T0547 101 :GKDYNYGL 1a8y 65 :LEDKGVGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=85654 # 1moq.101.76 read from T0547.t06.many.frag # found chain 1moq in training set Warning: unaligning (T0547)D103 (1moq)G319 because L (left) conformation "forbidden" or filtered. T0547 101 :GK 1moq 317 :LA T0547 104 :YNYGLE 1moq 320 :IPCDVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=85656 # 1vp4A.101.106 read from T0547.t06.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)Y104 (1vp4A)D98 because G (3-10) conformation "forbidden" or filtered. T0547 101 :GKD 1vp4A 95 :LDE T0547 105 :NYGLE 1vp4A 99 :NLIFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=85658 # 1vqoI.101.127 read from T0547.t06.many.frag # found chain 1vqoI in template set Warning: unaligning (T0547)E109 because last residue in template chain is (1vqoI)E140 T0547 101 :GKDYNYGL 1vqoI 132 :CTSLGVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85659 # 1dd9A.101.159 read from T0547.t06.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)D103 (1dd9A)E257 because D (zeta) conformation "forbidden" or filtered. T0547 101 :GK 1dd9A 255 :NA T0547 104 :YNYGLE 1dd9A 258 :PNRLLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=85661 # 1mla.101.80 read from T0547.t06.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 101 :GKDYNY 1mla 81 :GGKAPA T0547 108 :L 1mla 88 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=85663 # 1auoA.101.101 read from T0547.t06.many.frag # found chain 1auoA in training set Warning: unaligning (T0547)K102 (1auoA)I103 because P (beta_P) conformation "forbidden" or filtered. T0547 101 :G 1auoA 102 :G T0547 103 :DYNYGLE 1auoA 104 :DASRIFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85665 # 1ylqA.101.63 read from T0547.t06.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)G101 (1ylqA)F61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D103 (1ylqA)D63 because L (left) conformation "forbidden" or filtered. T0547 102 :K 1ylqA 62 :F T0547 104 :YNYGLE 1ylqA 64 :SPFEFH Number of specific fragments extracted= 2 number of extra gaps= 2 total=85667 # 1yzyA.101.210 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)E109 (1yzyA)G218 because Y (epsilon') conformation "forbidden" or filtered. T0547 101 :GKDYNYGL 1yzyA 210 :VADFKLVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=85668 # 2b8nA.101.71 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 101 :GKDYNYGLE 2b8nA 60 :LGKKIRKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85669 # 1rcqA.101.47 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G101 (1rcqA)L48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1rcqA)A56 because E (beta_S) conformation "forbidden" or filtered. T0547 102 :KDYNYGL 1rcqA 49 :AAEADGF Number of specific fragments extracted= 1 number of extra gaps= 2 total=85670 # 1r6wA.101.154 read from T0547.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)G101 (1r6wA)I153 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1r6wA)H157 because E (beta_S) conformation "forbidden" or filtered. T0547 102 :KDY 1r6wA 154 :PDL T0547 106 :YGLE 1r6wA 158 :LRLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=85672 # 1qgoA.101.32 read from T0547.t06.many.frag # found chain 1qgoA in template set Warning: unaligning (T0547)N105 (1qgoA)D37 because P (beta_P) conformation "forbidden" or filtered. T0547 101 :GKDY 1qgoA 33 :CPDR T0547 106 :YGLE 1qgoA 38 :LFRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=85674 # 1fcqA.101.175 read from T0547.t06.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)G101 (1fcqA)R176 because D (zeta) conformation "forbidden" or filtered. T0547 102 :KDYNYGLE 1fcqA 177 :PAANWGYY Number of specific fragments extracted= 1 number of extra gaps= 1 total=85675 # 1ezwA.101.55 read from T0547.t06.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)E109 because of BadResidue code BAD_PEPTIDE in next template residue (1ezwA)I65 T0547 101 :GKDYNYGL 1ezwA 56 :TSKIKLGP Number of specific fragments extracted= 1 number of extra gaps= 1 total=85676 # 2amlA.101.74 read from T0547.t06.many.frag # found chain 2amlA in training set Warning: unaligning (T0547)N105 (2amlA)R67 because E (beta_S) conformation "forbidden" or filtered. T0547 101 :GKDY 2amlA 63 :LADV T0547 106 :YGLE 2amlA 68 :ITIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=85678 1fuiA expands to /projects/compbio/data/pdb/1fui.pdb.gz 1fuiA:# 1fuiA.101.74 read from T0547.t06.many.frag # adding 1fuiA to template set # found chain 1fuiA in template set Warning: unaligning (T0547)G107 (1fuiA)G81 because G (3-10) conformation "forbidden" or filtered. T0547 101 :GKDYNY 1fuiA 75 :FSSQNV T0547 108 :LE 1fuiA 82 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=85680 # 1dg9A.101.33 read from T0547.t06.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)E109 (1dg9A)D42 because Y (epsilon') conformation "forbidden" or filtered. T0547 101 :GKDYNYGL 1dg9A 34 :NISDNWVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=85681 # 1v4vA.101.55 read from T0547.t06.many.frag # found chain 1v4vA in training set T0547 101 :GKDYNYGLE 1v4vA 56 :GIQEDRNLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=85682 # 1fyeA.101.56 read from T0547.t06.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)N105 (1fyeA)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 101 :GKDY 1fyeA 57 :LAPL T0547 106 :YGLE 1fyeA 62 :VNVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=85684 # 1x9iA.101.60 read from T0547.t06.many.frag # found chain 1x9iA in training set Warning: unaligning (T0547)D103 (1x9iA)N63 because L (left) conformation "forbidden" or filtered. T0547 101 :GK 1x9iA 61 :TW T0547 104 :YNYGLE 1x9iA 64 :WEVEVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=85686 # 1ks8A.101.198 read from T0547.t06.many.frag # found chain 1ks8A in training set Warning: unaligning (T0547)G101 (1ks8A)I199 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)L108 (1ks8A)Y206 because D (zeta) conformation "forbidden" or filtered. T0547 102 :KDYNYG 1ks8A 200 :TDARNF T0547 109 :E 1ks8A 207 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=85688 # 1of8A.101.149 read from T0547.t06.many.frag # found chain 1of8A in training set Warning: unaligning (T0547)D103 (1of8A)G152 because T (delta_L) conformation "forbidden" or filtered. T0547 101 :GK 1of8A 150 :NI T0547 104 :YNYGLE 1of8A 153 :LPIGSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=85690 # 1wer.101.67 read from T0547.t06.many.frag # found chain 1wer in training set Warning: unaligning (T0547)G107 (1wer)L787 because P (beta_P) conformation "forbidden" or filtered. T0547 101 :GKDYNY 1wer 781 :EDEATT T0547 108 :LE 1wer 788 :FR Number of specific fragments extracted= 2 number of extra gaps= 1 total=85692 # 1byi.101.29 read from T0547.t06.many.frag # found chain 1byi in training set Warning: unaligning (T0547)N105 (1byi)A34 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L108 (1byi)K37 because D (zeta) conformation "forbidden" or filtered. T0547 101 :GKDY 1byi 30 :GYRT T0547 106 :YG 1byi 35 :GY T0547 109 :E 1byi 38 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=85695 # 1vqoW.101.24 read from T0547.t06.many.frag # found chain 1vqoW in template set Warning: unaligning (T0547)G107 (1vqoW)H31 because P (beta_P) conformation "forbidden" or filtered. T0547 101 :GKDYNY 1vqoW 25 :NIHHVN T0547 108 :LE 1vqoW 32 :CT Number of specific fragments extracted= 2 number of extra gaps= 1 total=85697 # 1esc.101.48 read from T0547.t06.many.frag # found chain 1esc in template set Warning: unaligning (T0547)G107 (1esc)T55 because D (zeta) conformation "forbidden" or filtered. T0547 101 :GKDYNY 1esc 49 :LADKGI T0547 108 :LE 1esc 56 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=85699 # 1w5qA.101.118 read from T0547.t06.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)N105 (1w5qA)G123 because P (beta_P) conformation "forbidden" or filtered. T0547 101 :GKDY 1w5qA 119 :FPEL T0547 106 :YGLE 1w5qA 124 :IITD Number of specific fragments extracted= 2 number of extra gaps= 1 total=85701 # 1zhaA.101.72 read from T0547.t06.many.frag # found chain 1zhaA in template set Warning: unaligning (T0547)D103 (1zhaA)G1075 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1zhaA)D1081 because P (beta_P) conformation "forbidden" or filtered. T0547 101 :GK 1zhaA 1073 :EF T0547 104 :YNYGL 1zhaA 1076 :LKITT Number of specific fragments extracted= 2 number of extra gaps= 2 total=85703 # 1zc6A.101.98 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)E109 (1zc6A)L107 because E (beta_S) conformation "forbidden" or filtered. T0547 101 :GKDYNYGL 1zc6A 99 :APGFARLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=85704 # 1rcqA.102.48 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :KDYNYGLE 1rcqA 49 :AAEADGFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=85705 # 1dd9A.102.160 read from T0547.t06.many.frag # found chain 1dd9A in training set T0547 102 :KDYNYGLEA 1dd9A 256 :AEPNRLLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85706 # 1vp4A.102.107 read from T0547.t06.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)K102 (1vp4A)D96 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNYGLEA 1vp4A 97 :EDNLIFTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=85707 # 1a8y.102.65 read from T0547.t06.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)N105 (1a8y)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 102 :KDY 1a8y 66 :EDK T0547 106 :YGLEA 1a8y 70 :VGFGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85709 # 1mla.102.81 read from T0547.t06.many.frag # found chain 1mla in training set Warning: unaligning (T0547)D103 (1mla)K83 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :K 1mla 82 :G T0547 104 :YNYGL 1mla 84 :APAMM T0547 110 :A 1mla 90 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=85712 # 1yk3A.102.38 read from T0547.t06.many.frag # found chain 1yk3A in template set Warning: unaligning (T0547)N105 (1yk3A)P42 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1yk3A)G44 because E (beta_S) conformation "forbidden" or filtered. T0547 102 :KDY 1yk3A 39 :LEP T0547 106 :Y 1yk3A 43 :Y T0547 108 :LEA 1yk3A 45 :LRV Number of specific fragments extracted= 3 number of extra gaps= 2 total=85715 # 1zhaA.102.73 read from T0547.t06.many.frag # found chain 1zhaA in template set Warning: unaligning (T0547)D103 (1zhaA)G1075 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1zhaA)T1079 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L108 (1zhaA)T1080 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :K 1zhaA 1074 :F T0547 104 :YNY 1zhaA 1076 :LKI T0547 109 :EA 1zhaA 1081 :DI Number of specific fragments extracted= 3 number of extra gaps= 2 total=85718 # 1thtA.102.103 read from T0547.t06.many.frag # found chain 1thtA in template set T0547 102 :KDYNYGLEA 1thtA 104 :GTQNIGLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85719 # 7odcA.102.80 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N105 (7odcA)G84 because T (delta_L) conformation "forbidden" or filtered. T0547 102 :KDY 7odcA 81 :AAI T0547 106 :YGLEA 7odcA 85 :TGFDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=85721 # 1ylqA.102.64 read from T0547.t06.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)D103 (1ylqA)D63 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1ylqA)E67 because E (beta_S) conformation "forbidden" or filtered. T0547 102 :K 1ylqA 62 :F T0547 104 :YNY 1ylqA 64 :SPF T0547 108 :LEA 1ylqA 68 :FHI Number of specific fragments extracted= 3 number of extra gaps= 2 total=85724 # 1moq.102.77 read from T0547.t06.many.frag # found chain 1moq in training set Warning: unaligning (T0547)D103 (1moq)G319 because L (left) conformation "forbidden" or filtered. T0547 102 :K 1moq 318 :A T0547 104 :YNYGLEA 1moq 320 :IPCDVEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=85726 # 1z5oA.102.8 read from T0547.t06.many.frag # found chain 1z5oA in template set T0547 102 :KDYNYGLEA 1z5oA -2 :FSMKIGIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85727 # 1auoA.102.102 read from T0547.t06.many.frag # found chain 1auoA in training set Warning: unaligning (T0547)G107 (1auoA)I108 because E (beta_S) conformation "forbidden" or filtered. T0547 102 :KDYNY 1auoA 103 :IDASR T0547 108 :LEA 1auoA 109 :FLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=85729 # 1mw9X.102.129 read from T0547.t06.many.frag # found chain 1mw9X in training set T0547 102 :KDYNYGLEA 1mw9X 130 :DDARYSRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85730 # 1vqoI.102.128 read from T0547.t06.many.frag # found chain 1vqoI in template set Warning: unaligning (T0547)N105 (1vqoI)G136 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 because last residue in template chain is (1vqoI)E140 T0547 102 :KDY 1vqoI 133 :TSL T0547 106 :YGL 1vqoI 137 :VTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=85732 # 2b8nA.102.72 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 102 :KDYNYGLEA 2b8nA 61 :GKKIRKGVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85733 # 1zc6A.102.98 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)K102 (1zc6A)A99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1zc6A)R104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1zc6A)L107 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DYNY 1zc6A 100 :PGFA T0547 108 :LE 1zc6A 105 :LS Number of specific fragments extracted= 2 number of extra gaps= 3 total=85735 # 1qgoA.102.33 read from T0547.t06.many.frag # found chain 1qgoA in template set Warning: unaligning (T0547)E109 (1qgoA)A41 because E (beta_S) conformation "forbidden" or filtered. T0547 102 :KDYNYGL 1qgoA 34 :PDRDLFR T0547 110 :A 1qgoA 42 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=85737 # 1jr2A.102.110 read from T0547.t06.many.frag # found chain 1jr2A in template set T0547 102 :KDYNYGLEA 1jr2A 90 :KWNAKSVYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=85738 # 1vjrA.102.95 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)Y104 (1vjrA)G86 because S (epsilon) conformation "forbidden" or filtered. T0547 102 :KD 1vjrA 84 :RF T0547 105 :NYGLEA 1vjrA 87 :RCRIFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85740 # 1of8A.102.150 read from T0547.t06.many.frag # found chain 1of8A in training set Warning: unaligning (T0547)G107 (1of8A)G156 because E (beta_S) conformation "forbidden" or filtered. T0547 102 :KDYNY 1of8A 151 :IGLPI T0547 108 :LEA 1of8A 157 :SEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=85742 # 1pjr.102.80 read from T0547.t06.many.frag # found chain 1pjr in template set Warning: unaligning (T0547)K102 (1pjr)G81 because S (epsilon) conformation "forbidden" or filtered. T0547 103 :DYNYGLEA 1pjr 82 :GAAEDVWI Number of specific fragments extracted= 1 number of extra gaps= 1 total=85743 # 1x9iA.102.61 read from T0547.t06.many.frag # found chain 1x9iA in training set Warning: unaligning (T0547)D103 (1x9iA)N63 because L (left) conformation "forbidden" or filtered. T0547 102 :K 1x9iA 62 :W T0547 104 :YNYGLEA 1x9iA 64 :WEVEVIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=85745 # 1yxyA.102.46 read from T0547.t06.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)Y104 (1yxyA)G49 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y106 (1yxyA)V51 because G (3-10) conformation "forbidden" or filtered. T0547 102 :KD 1yxyA 47 :EA T0547 105 :N 1yxyA 50 :A T0547 107 :GLEA 1yxyA 52 :GIRA Number of specific fragments extracted= 3 number of extra gaps= 2 total=85748 # 1fuiA.102.75 read from T0547.t06.many.frag # found chain 1fuiA in template set Warning: unaligning (T0547)G107 (1fuiA)G81 because G (3-10) conformation "forbidden" or filtered. T0547 102 :KDYNY 1fuiA 76 :SSQNV T0547 108 :LEA 1fuiA 82 :LTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=85750 # 1u7nA.102.91 read from T0547.t06.many.frag # found chain 1u7nA in template set T0547 102 :KDYNYGLEA 1u7nA 89 :GEADAIFSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85751 # 2ae0X.102.75 read from T0547.t06.many.frag # found chain 2ae0X in template set T0547 102 :KDYNYGLEA 2ae0X 76 :NMRQFGIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85752 # 1ve4A.102.61 read from T0547.t06.many.frag # found chain 1ve4A in training set Warning: unaligning (T0547)E109 (1ve4A)G69 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :KDYNYGL 1ve4A 62 :DLGIAEI T0547 110 :A 1ve4A 70 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=85754 # 1dg9A.102.34 read from T0547.t06.many.frag # found chain 1dg9A in template set Warning: unaligning (T0547)N105 (1dg9A)N38 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1dg9A)D42 because Y (epsilon') conformation "forbidden" or filtered. T0547 102 :KDY 1dg9A 35 :ISD T0547 106 :YGL 1dg9A 39 :WVI T0547 110 :A 1dg9A 43 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=85757 # 1vdkA.102.218 read from T0547.t06.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)G107 (1vdkA)N224 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1vdkA)I227 because P (beta_P) conformation "forbidden" or filtered. T0547 102 :KDYNY 1vdkA 219 :EKGLY T0547 108 :LE 1vdkA 225 :LA Number of specific fragments extracted= 2 number of extra gaps= 2 total=85759 # 1rcqA.103.49 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)Y104 (1rcqA)E51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1rcqA)A52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :D 1rcqA 50 :A T0547 106 :YGLE 1rcqA 53 :DGFA T0547 111 :G 1rcqA 58 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=85762 # 1yk3A.103.39 read from T0547.t06.many.frag # found chain 1yk3A in template set Warning: unaligning (T0547)N105 (1yk3A)P42 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1yk3A)A48 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DY 1yk3A 40 :EP T0547 106 :YGLEA 1yk3A 43 :YGLRV Number of specific fragments extracted= 2 number of extra gaps= 2 total=85764 # 7odcA.103.81 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 103 :DYNYGLEAG 7odcA 82 :AIGTGFDCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85765 # 1thtA.103.104 read from T0547.t06.many.frag # found chain 1thtA in template set T0547 103 :DYNYGLEAG 1thtA 105 :TQNIGLIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85766 # 1yxyA.103.47 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 103 :DYNYGLEAG 1yxyA 48 :AGAVGIRAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=85767 # 1dd9A.103.161 read from T0547.t06.many.frag # found chain 1dd9A in training set T0547 103 :DYNYGLEAG 1dd9A 257 :EPNRLLVVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=85768 # 1twdA.103.0 read from T0547.t06.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)Y104 because first residue in template chain is (1twdA)A2 T0547 105 :NYGLEAG 1twdA 3 :LLEICCY Number of specific fragments extracted= 1 number of extra gaps= 0 total=85769 # 1a8y.103.66 read from T0547.t06.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)Y104 (1a8y)K68 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1a8y)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1a8y)G71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1a8y)G73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1a8y)L74 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :D 1a8y 67 :D T0547 106 :Y 1a8y 70 :V T0547 108 :L 1a8y 72 :F T0547 111 :G 1a8y 75 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=85773 # 1mla.103.82 read from T0547.t06.many.frag # found chain 1mla in training set Warning: unaligning (T0547)D103 (1mla)K83 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1mla)H91 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :YNYGLEA 1mla 84 :APAMMAG Number of specific fragments extracted= 1 number of extra gaps= 2 total=85774 # 1zc6A.103.99 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)G111 (1zc6A)A108 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNYGLEA 1zc6A 100 :PGFARLSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=85775 # 1vp4A.103.108 read from T0547.t06.many.frag # found chain 1vp4A in template set T0547 103 :DYNYGLEAG 1vp4A 97 :EDNLIFTVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=85776 # 1jr2A.103.111 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G107 (1jr2A)S95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1jr2A)V99 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DYNY 1jr2A 91 :WNAK T0547 108 :LEA 1jr2A 96 :VYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=85778 # 1yzyA.103.211 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)Y104 (1yzyA)D212 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1yzyA)T217 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1yzyA)G218 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1yzyA)G219 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :D 1yzyA 211 :A T0547 105 :NYGL 1yzyA 213 :FKLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=85780 # 1knwA.103.66 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N105 (1knwA)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1knwA)K71 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DY 1knwA 67 :EQ T0547 106 :Y 1knwA 70 :V T0547 108 :LEAG 1knwA 72 :VDSV Number of specific fragments extracted= 3 number of extra gaps= 2 total=85783 # 1zhaA.103.74 read from T0547.t06.many.frag # found chain 1zhaA in template set Warning: unaligning (T0547)D103 (1zhaA)G1075 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L108 (1zhaA)T1080 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNYG 1zhaA 1076 :LKIT T0547 109 :EAG 1zhaA 1081 :DIH Number of specific fragments extracted= 2 number of extra gaps= 2 total=85785 # 1ylqA.103.65 read from T0547.t06.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)G107 (1ylqA)E67 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DYNY 1ylqA 63 :DSPF T0547 108 :LEAG 1ylqA 68 :FHIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85787 # 1ybdA.103.106 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)L108 (1ybdA)A114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1ybdA)Y117 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DYNYG 1ybdA 109 :SMQQI T0547 109 :EA 1ybdA 115 :ET Number of specific fragments extracted= 2 number of extra gaps= 2 total=85789 # 1moq.103.78 read from T0547.t06.many.frag # found chain 1moq in training set Warning: unaligning (T0547)N105 (1moq)P321 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1moq)D323 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DY 1moq 319 :GI T0547 106 :Y 1moq 322 :C T0547 108 :LEAG 1moq 324 :VEIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=85792 # 1vjrA.103.96 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)Y104 (1vjrA)G86 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N105 (1vjrA)R87 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :D 1vjrA 85 :F T0547 106 :YGLEAG 1vjrA 88 :CRIFLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85794 # 1q79A.103.89 read from T0547.t06.many.frag # found chain 1q79A in template set Warning: unaligning (T0547)L108 (1q79A)G95 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1q79A)K96 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNYG 1q79A 90 :IENVG T0547 110 :AG 1q79A 97 :IF Number of specific fragments extracted= 2 number of extra gaps= 1 total=85796 # 1zuwA.103.87 read from T0547.t06.many.frag # found chain 1zuwA in training set Warning: unaligning (T0547)G107 (1zuwA)P92 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1zuwA)V96 because G (3-10) conformation "forbidden" or filtered. T0547 103 :DYNY 1zuwA 88 :SVGI T0547 108 :LEA 1zuwA 93 :VVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=85798 # 1ve4A.103.62 read from T0547.t06.many.frag # found chain 1ve4A in training set Warning: unaligning (T0547)Y104 (1ve4A)G64 because T (delta_L) conformation "forbidden" or filtered. T0547 103 :D 1ve4A 63 :L T0547 105 :NYGLEAG 1ve4A 65 :IAEIGVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=85800 # 1u7nA.103.92 read from T0547.t06.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)Y106 (1u7nA)A93 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1u7nA)G98 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DYN 1u7nA 90 :EAD T0547 107 :GLEA 1u7nA 94 :IFSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=85802 # 1auoA.103.103 read from T0547.t06.many.frag # found chain 1auoA in training set Warning: unaligning (T0547)G107 (1auoA)I108 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DYNY 1auoA 104 :DASR T0547 108 :LEAG 1auoA 109 :FLAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=85804 # 1mw9X.103.130 read from T0547.t06.many.frag # found chain 1mw9X in training set Warning: unaligning (T0547)A110 (1mw9X)V138 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DYNYGLE 1mw9X 131 :DARYSRV T0547 111 :G 1mw9X 139 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=85806 # 1u4bA.103.66 read from T0547.t06.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)A110 (1u4bA)M370 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNYGLE 1u4bA 363 :DETKKKS T0547 111 :G 1u4bA 371 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=85808 # 1izoA.103.40 read from T0547.t06.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)N105 (1izoA)G43 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1izoA)M49 because E (beta_S) conformation "forbidden" or filtered. T0547 103 :DY 1izoA 41 :LL T0547 106 :YGLEA 1izoA 44 :KNFIC Number of specific fragments extracted= 2 number of extra gaps= 2 total=85810 # 1jixA.103.31 read from T0547.t06.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)N105 (1jixA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1jixA)N36 because N (gamma') conformation "forbidden" or filtered. T0547 103 :DY 1jixA 32 :EM T0547 106 :Y 1jixA 35 :L T0547 108 :LEAG 1jixA 37 :VDII Number of specific fragments extracted= 3 number of extra gaps= 2 total=85813 # 1rttA.103.33 read from T0547.t06.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)N105 (1rttA)G36 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1rttA)A42 because P (beta_P) conformation "forbidden" or filtered. T0547 103 :DY 1rttA 34 :PP T0547 106 :YGLEA 1rttA 37 :MSIEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=85815 # 1wehA.103.30 read from T0547.t06.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)A110 (1wehA)C38 because Y (epsilon') conformation "forbidden" or filtered. T0547 103 :DYNYGLE 1wehA 31 :EEGFGLA T0547 111 :G 1wehA 39 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=85817 # 1rcqA.104.50 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNYGLE 1rcqA 51 :EADGFA T0547 111 :G 1rcqA 58 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=85819 # 7odcA.104.82 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N105 (7odcA)G84 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (7odcA)A90 because G (3-10) conformation "forbidden" or filtered. T0547 104 :Y 7odcA 83 :I T0547 106 :YGLEA 7odcA 85 :TGFDC T0547 112 :S 7odcA 91 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=85822 # 1yk3A.104.40 read from T0547.t06.many.frag # found chain 1yk3A in template set Warning: unaligning (T0547)N105 (1yk3A)P42 because C (cis) conformation "forbidden" or filtered. T0547 104 :Y 1yk3A 41 :P T0547 106 :YGLEAGS 1yk3A 43 :YGLRVAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=85824 # 1yxyA.104.48 read from T0547.t06.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)Y104 (1yxyA)G49 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1yxyA)N56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1yxyA)S57 because S (epsilon) conformation "forbidden" or filtered. T0547 105 :NYGLEA 1yxyA 50 :AVGIRA Number of specific fragments extracted= 1 number of extra gaps= 2 total=85825 # 1thtA.104.105 read from T0547.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)G107 (1thtA)G109 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1thtA)A113 because E (beta_S) conformation "forbidden" or filtered. T0547 104 :YNY 1thtA 106 :QNI T0547 108 :LEA 1thtA 110 :LIA T0547 112 :S 1thtA 114 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=85828 # 1jr2A.104.112 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G107 (1jr2A)S95 because E (beta_S) conformation "forbidden" or filtered. T0547 104 :YNY 1jr2A 92 :NAK T0547 108 :LEAGS 1jr2A 96 :VYVVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=85830 # 1twdA.104.1 read from T0547.t06.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)Y104 because first residue in template chain is (1twdA)A2 Warning: unaligning (T0547)G111 (1twdA)Y9 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1twdA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 105 :NYGLEA 1twdA 3 :LLEICC Number of specific fragments extracted= 1 number of extra gaps= 1 total=85831 # 1knwA.104.67 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G107 (1knwA)K71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1knwA)V75 because G (3-10) conformation "forbidden" or filtered. T0547 104 :YNY 1knwA 68 :QGV T0547 108 :LEA 1knwA 72 :VDS T0547 112 :S 1knwA 76 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=85834 # 1zc6A.104.100 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)G111 (1zc6A)A108 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNYGLEA 1zc6A 101 :GFARLSL T0547 112 :S 1zc6A 109 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=85836 # 1dd9A.104.162 read from T0547.t06.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)G107 (1dd9A)L261 because E (beta_S) conformation "forbidden" or filtered. T0547 104 :YNY 1dd9A 258 :PNR T0547 108 :LEAGS 1dd9A 262 :LVVEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=85838 # 1ybdA.104.107 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)G111 (1ybdA)Y117 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :YNYGLEA 1ybdA 110 :MQQIAET T0547 112 :S 1ybdA 118 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=85840 # 1mla.104.83 read from T0547.t06.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1mla)S92 because S (epsilon) conformation "forbidden" or filtered. T0547 104 :YNY 1mla 84 :APA T0547 108 :L 1mla 88 :M T0547 110 :AG 1mla 90 :GH Number of specific fragments extracted= 3 number of extra gaps= 3 total=85843 # 1vjrA.104.97 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)Y104 (1vjrA)G86 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1vjrA)F91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1vjrA)L93 because N (gamma') conformation "forbidden" or filtered. T0547 105 :NYGL 1vjrA 87 :RCRI T0547 110 :A 1vjrA 92 :L T0547 112 :S 1vjrA 94 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=85846 # 1yzyA.104.212 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)N105 (1yzyA)F213 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1yzyA)G218 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :Y 1yzyA 212 :D T0547 106 :YGLE 1yzyA 214 :KLVT T0547 111 :GS 1yzyA 219 :GS Number of specific fragments extracted= 3 number of extra gaps= 2 total=85849 # 1izoA.104.41 read from T0547.t06.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)N105 (1izoA)G43 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1izoA)M49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1izoA)T50 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :Y 1izoA 42 :L T0547 106 :YGLEA 1izoA 44 :KNFIC Number of specific fragments extracted= 2 number of extra gaps= 2 total=85851 # 1wehA.104.31 read from T0547.t06.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)G107 (1wehA)G35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1wehA)C38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1wehA)G40 because T (delta_L) conformation "forbidden" or filtered. T0547 104 :YNY 1wehA 32 :EGF T0547 108 :LE 1wehA 36 :LA T0547 111 :G 1wehA 39 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=85854 # 1zuwA.104.88 read from T0547.t06.many.frag # found chain 1zuwA in training set Warning: unaligning (T0547)G107 (1zuwA)P92 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :YNY 1zuwA 89 :VGI T0547 108 :LEAGS 1zuwA 93 :VVGVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=85856 # 1hdhA.104.40 read from T0547.t06.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)G107 (1hdhA)D44 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1hdhA)T47 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNY 1hdhA 41 :RLT T0547 108 :LE 1hdhA 45 :FH T0547 111 :GS 1hdhA 48 :AS Number of specific fragments extracted= 3 number of extra gaps= 2 total=85859 # 1zhaA.104.75 read from T0547.t06.many.frag # found chain 1zhaA in template set Warning: unaligning (T0547)G107 (1zhaA)T1079 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1zhaA)H1083 because G (3-10) conformation "forbidden" or filtered. T0547 104 :YNY 1zhaA 1076 :LKI T0547 108 :LEA 1zhaA 1080 :TDI T0547 112 :S 1zhaA 1084 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=85862 # 1moq.104.79 read from T0547.t06.many.frag # found chain 1moq in training set T0547 104 :YNYGLEAGS 1moq 320 :IPCDVEIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=85863 # 1u7nA.104.93 read from T0547.t06.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)N105 (1u7nA)D92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y106 (1u7nA)A93 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :Y 1u7nA 91 :A T0547 107 :GLEAGS 1u7nA 94 :IFSAGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=85865 # 1jixA.104.32 read from T0547.t06.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)N105 (1jixA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1jixA)N36 because N (gamma') conformation "forbidden" or filtered. T0547 104 :Y 1jixA 33 :M T0547 106 :Y 1jixA 35 :L T0547 108 :LEAGS 1jixA 37 :VDIIS Number of specific fragments extracted= 3 number of extra gaps= 2 total=85868 # 1vp4A.104.109 read from T0547.t06.many.frag # found chain 1vp4A in template set T0547 104 :YNYGLEAGS 1vp4A 98 :DNLIFTVGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=85869 # 1vliA.104.114 read from T0547.t06.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)G107 (1vliA)L106 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L108 (1vliA)S107 because Y (epsilon') conformation "forbidden" or filtered. T0547 104 :YNY 1vliA 103 :VIF T0547 109 :EAGS 1vliA 108 :TVCD Number of specific fragments extracted= 2 number of extra gaps= 1 total=85871 # 1u4bA.104.67 read from T0547.t06.many.frag # found chain 1u4bA in template set Warning: unaligning (T0547)G107 (1u4bA)K367 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1u4bA)D372 because L (left) conformation "forbidden" or filtered. T0547 104 :YNY 1u4bA 364 :ETK T0547 108 :LEAG 1u4bA 368 :KSMF Number of specific fragments extracted= 2 number of extra gaps= 2 total=85873 # 1rttA.104.34 read from T0547.t06.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)A110 (1rttA)L41 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1rttA)A42 because P (beta_P) conformation "forbidden" or filtered. T0547 104 :YNYGLE 1rttA 35 :PGMSIE T0547 112 :S 1rttA 43 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=85875 # 2ar0A.104.92 read from T0547.t06.many.frag # found chain 2ar0A in template set Warning: unaligning (T0547)N105 (2ar0A)N94 because L (left) conformation "forbidden" or filtered. T0547 104 :Y 2ar0A 93 :H T0547 106 :YGLEAGS 2ar0A 95 :VSTTITE Number of specific fragments extracted= 2 number of extra gaps= 1 total=85877 # 1khxA.104.137 read from T0547.t06.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)G107 (1khxA)N381 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1khxA)F385 because E (beta_S) conformation "forbidden" or filtered. T0547 104 :YNY 1khxA 378 :PGC T0547 108 :LEA 1khxA 382 :LKI T0547 112 :S 1khxA 386 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=85880 # 2ae0X.104.77 read from T0547.t06.many.frag # found chain 2ae0X in template set T0547 104 :YNYGLEAGS 2ae0X 78 :RQFGIDAWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=85881 # 2a3nA.104.79 read from T0547.t06.many.frag # found chain 2a3nA in training set Warning: unaligning (T0547)N105 (2a3nA)T69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (2a3nA)P71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (2a3nA)E75 because E (beta_S) conformation "forbidden" or filtered. T0547 104 :Y 2a3nA 68 :T T0547 106 :Y 2a3nA 70 :L T0547 108 :LEA 2a3nA 72 :VYV T0547 112 :S 2a3nA 76 :Q Number of specific fragments extracted= 4 number of extra gaps= 3 total=85885 # 7odcA.105.83 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N105 (7odcA)G84 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (7odcA)G86 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :Y 7odcA 85 :T T0547 108 :LEAGSK 7odcA 87 :FDCASK Number of specific fragments extracted= 2 number of extra gaps= 2 total=85887 # 1rcqA.105.51 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 105 :NYGLEAGSK 1rcqA 52 :ADGFAVACI Number of specific fragments extracted= 1 number of extra gaps= 0 total=85888 # 1yxyA.105.49 read from T0547.t06.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)Y106 (1yxyA)V51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1yxyA)R54 because E (beta_S) conformation "forbidden" or filtered. T0547 105 :N 1yxyA 50 :A T0547 107 :GL 1yxyA 52 :GI T0547 110 :AGSK 1yxyA 55 :ANSV Number of specific fragments extracted= 3 number of extra gaps= 2 total=85891 # 1thtA.105.106 read from T0547.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)E109 (1thtA)I111 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1thtA)S114 because S (epsilon) conformation "forbidden" or filtered. T0547 105 :NYGL 1thtA 107 :NIGL T0547 110 :AG 1thtA 112 :AA T0547 113 :K 1thtA 115 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=85894 # 1knwA.105.68 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G107 (1knwA)K71 because P (beta_P) conformation "forbidden" or filtered. T0547 105 :NY 1knwA 69 :GV T0547 108 :LEAGSK 1knwA 72 :VDSVSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85896 # 1twdA.105.2 read from T0547.t06.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)N105 (1twdA)L3 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1twdA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGLEAG 1twdA 4 :LEICCY T0547 113 :K 1twdA 11 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=85898 # 1jr2A.105.113 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)S112 (1jr2A)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 105 :NYGLEAG 1jr2A 93 :AKSVYVV T0547 113 :K 1jr2A 101 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=85900 # 1zc6A.105.101 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)G111 (1zc6A)A108 because Y (epsilon') conformation "forbidden" or filtered. T0547 105 :NYGLEA 1zc6A 102 :FARLSL T0547 112 :SK 1zc6A 109 :TD Number of specific fragments extracted= 2 number of extra gaps= 1 total=85902 # 1yk3A.105.41 read from T0547.t06.many.frag # found chain 1yk3A in template set Warning: unaligning (T0547)N105 (1yk3A)P42 because C (cis) conformation "forbidden" or filtered. T0547 106 :YGLEAGSK 1yk3A 43 :YGLRVAQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=85903 # 1mla.105.84 read from T0547.t06.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1mla)S92 because S (epsilon) conformation "forbidden" or filtered. T0547 105 :NY 1mla 85 :PA T0547 108 :L 1mla 88 :M T0547 110 :AG 1mla 90 :GH T0547 113 :K 1mla 93 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=85907 # 1ybdA.105.108 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)L108 (1ybdA)A114 because Y (epsilon') conformation "forbidden" or filtered. T0547 105 :NYG 1ybdA 111 :QQI T0547 109 :EAGSK 1ybdA 115 :ETYAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=85909 # 1dd9A.105.163 read from T0547.t06.many.frag # found chain 1dd9A in training set T0547 105 :NYGLEAGSK 1dd9A 259 :NRLLVVEGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=85910 # 1vjrA.105.98 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)G107 (1vjrA)R89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1vjrA)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 105 :NY 1vjrA 87 :RC T0547 108 :LEAG 1vjrA 90 :IFLL T0547 113 :K 1vjrA 95 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=85913 # 1hdhA.105.41 read from T0547.t06.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)K113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1hdhA)S52 T0547 105 :NYGLEAGS 1hdhA 42 :LTDFHTAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=85914 # 1wehA.105.32 read from T0547.t06.many.frag # found chain 1wehA in training set Warning: unaligning (T0547)N105 (1wehA)G33 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1wehA)C38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1wehA)G39 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1wehA)G40 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 (1wehA)Y41 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGLE 1wehA 34 :FGLA Number of specific fragments extracted= 1 number of extra gaps= 2 total=85915 # 1vliA.105.115 read from T0547.t06.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)L108 (1vliA)S107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1vliA)C110 because G (3-10) conformation "forbidden" or filtered. T0547 105 :NYG 1vliA 104 :IFL T0547 109 :EA 1vliA 108 :TV T0547 112 :SK 1vliA 111 :DE Number of specific fragments extracted= 3 number of extra gaps= 2 total=85918 # 1z70X.105.147 read from T0547.t06.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)Y106 (1z70X)A1221 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L108 (1z70X)K1223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1z70X)R1224 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1z70X)T1227 because P (beta_P) conformation "forbidden" or filtered. T0547 105 :N 1z70X 1220 :W T0547 107 :G 1z70X 1222 :G T0547 110 :AG 1z70X 1225 :LP T0547 113 :K 1z70X 1228 :E Number of specific fragments extracted= 4 number of extra gaps= 3 total=85922 # 1izoA.105.42 read from T0547.t06.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)G111 (1izoA)M49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1izoA)T50 because Y (epsilon') conformation "forbidden" or filtered. T0547 105 :NYGLEA 1izoA 43 :GKNFIC T0547 113 :K 1izoA 51 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=85924 # 1zuwA.105.89 read from T0547.t06.many.frag # found chain 1zuwA in training set Warning: unaligning (T0547)G111 (1zuwA)V96 because G (3-10) conformation "forbidden" or filtered. T0547 105 :NYGLEA 1zuwA 90 :GIPVVG T0547 112 :SK 1zuwA 97 :IQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=85926 # 1gmxA.105.0 read from T0547.t06.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)N105 because first residue in template chain is (1gmxA)M1 Warning: unaligning (T0547)G107 (1gmxA)Q3 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1gmxA)C6 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1gmxA)I7 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :Y 1gmxA 2 :D T0547 108 :LE 1gmxA 4 :FE T0547 112 :SK 1gmxA 8 :NV Number of specific fragments extracted= 3 number of extra gaps= 2 total=85929 # 1yzyA.105.213 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)N105 (1yzyA)F213 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :YGLEAGSK 1yzyA 214 :KLVTGGSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=85930 # 1rlzA.105.123 read from T0547.t06.many.frag # found chain 1rlzA in template set Warning: unaligning (T0547)E109 (1rlzA)L128 because E (beta_S) conformation "forbidden" or filtered. T0547 105 :NYGL 1rlzA 124 :MVDV T0547 110 :AGSK 1rlzA 129 :VTTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=85932 # 1vkfA.105.83 read from T0547.t06.many.frag # found chain 1vkfA in training set Warning: unaligning (T0547)E109 (1vkfA)I76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1vkfA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1vkfA)I78 because G (3-10) conformation "forbidden" or filtered. T0547 105 :NYGL 1vkfA 72 :ADGI T0547 112 :SK 1vkfA 79 :KP Number of specific fragments extracted= 2 number of extra gaps= 1 total=85934 # 1wbhA.105.69 read from T0547.t06.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)G107 (1wbhA)A71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1wbhA)T73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1wbhA)L75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1wbhA)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 105 :NY 1wbhA 69 :VG T0547 108 :L 1wbhA 72 :G T0547 110 :A 1wbhA 74 :V T0547 113 :K 1wbhA 77 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=85938 # 1u7nA.105.94 read from T0547.t06.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)G107 (1u7nA)I94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1u7nA)N99 because P (beta_P) conformation "forbidden" or filtered. T0547 105 :NY 1u7nA 92 :DA T0547 108 :LEAG 1u7nA 95 :FSAG T0547 113 :K 1u7nA 100 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=85941 # 1vp4A.105.110 read from T0547.t06.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)N105 (1vp4A)N99 because G (3-10) conformation "forbidden" or filtered. T0547 106 :YGLEAGSK 1vp4A 100 :LIFTVGSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=85942 # 1zhaA.105.76 read from T0547.t06.many.frag # found chain 1zhaA in template set Warning: unaligning (T0547)L108 (1zhaA)T1080 because Y (epsilon') conformation "forbidden" or filtered. T0547 105 :NYG 1zhaA 1077 :KIT T0547 109 :EAGSK 1zhaA 1081 :DIHES Number of specific fragments extracted= 2 number of extra gaps= 1 total=85944 # 1jixA.105.33 read from T0547.t06.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)N105 (1jixA)G34 because T (delta_L) conformation "forbidden" or filtered. T0547 106 :YGLEAGSK 1jixA 35 :LNVDIISL Number of specific fragments extracted= 1 number of extra gaps= 1 total=85945 # 1khxA.105.138 read from T0547.t06.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)G111 (1khxA)F385 because E (beta_S) conformation "forbidden" or filtered. T0547 105 :NYGLEA 1khxA 379 :GCNLKI T0547 112 :SK 1khxA 386 :NN Number of specific fragments extracted= 2 number of extra gaps= 1 total=85947 # 1eu1A.105.229 read from T0547.t06.many.frag # found chain 1eu1A in training set T0547 105 :NYGLEAGSK 1eu1A 230 :YFGADVVSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=85948 # 7odcA.106.84 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G107 (7odcA)G86 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :Y 7odcA 85 :T T0547 108 :LEAGSKA 7odcA 87 :FDCASKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=85950 # 1yxyA.106.50 read from T0547.t06.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)Y106 (1yxyA)V51 because G (3-10) conformation "forbidden" or filtered. T0547 107 :GLEAGSKA 1yxyA 52 :GIRANSVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=85951 # 1rcqA.106.52 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G107 (1rcqA)G54 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :Y 1rcqA 53 :D T0547 108 :LEAGSKA 1rcqA 55 :FAVACIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=85953 # 1knwA.106.69 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G107 (1knwA)K71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1knwA)S74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1knwA)V75 because G (3-10) conformation "forbidden" or filtered. T0547 106 :Y 1knwA 70 :V T0547 108 :LE 1knwA 72 :VD T0547 112 :SKA 1knwA 76 :SLG Number of specific fragments extracted= 3 number of extra gaps= 2 total=85956 # 1thtA.106.107 read from T0547.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)G111 (1thtA)A113 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :YGLEA 1thtA 108 :IGLIA T0547 112 :SKA 1thtA 114 :SLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=85958 # 1twdA.106.3 read from T0547.t06.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)G107 (1twdA)E5 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1twdA)Y9 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1twdA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :Y 1twdA 4 :L T0547 108 :LEA 1twdA 6 :ICC T0547 113 :KA 1twdA 11 :ME Number of specific fragments extracted= 3 number of extra gaps= 2 total=85961 # 1jr2A.106.114 read from T0547.t06.many.frag # found chain 1jr2A in template set T0547 106 :YGLEAGSKA 1jr2A 94 :KSVYVVGNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=85962 # 1yk3A.106.42 read from T0547.t06.many.frag # found chain 1yk3A in template set T0547 106 :YGLEAGSKA 1yk3A 43 :YGLRVAQLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=85963 # 1zc6A.106.102 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)G107 (1zc6A)R104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1zc6A)L107 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1zc6A)A108 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :Y 1zc6A 103 :A T0547 108 :LE 1zc6A 105 :LS T0547 112 :SKA 1zc6A 109 :TDG Number of specific fragments extracted= 3 number of extra gaps= 2 total=85966 # 1mla.106.85 read from T0547.t06.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :Y 1mla 86 :A T0547 108 :L 1mla 88 :M T0547 110 :AGSKA 1mla 90 :GHSLG Number of specific fragments extracted= 3 number of extra gaps= 2 total=85969 # 1hdhA.106.42 read from T0547.t06.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)A110 (1hdhA)T47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1hdhA)A48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1hdhA)S52 T0547 106 :YGLE 1hdhA 43 :TDFH T0547 112 :S 1hdhA 49 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=85971 # 1vjrA.106.99 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)G107 (1vjrA)R89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1vjrA)F91 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :Y 1vjrA 88 :C T0547 108 :L 1vjrA 90 :I T0547 110 :AGSKA 1vjrA 92 :LLGTP Number of specific fragments extracted= 3 number of extra gaps= 2 total=85974 # 1ybdA.106.109 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)Y106 (1ybdA)Q112 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L108 (1ybdA)A114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1ybdA)E115 because P (beta_P) conformation "forbidden" or filtered. T0547 107 :G 1ybdA 113 :I T0547 110 :AGSKA 1ybdA 116 :TYARP Number of specific fragments extracted= 2 number of extra gaps= 2 total=85976 # 1dd9A.106.164 read from T0547.t06.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)Y106 (1dd9A)R260 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G107 (1dd9A)L261 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1dd9A)V263 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1dd9A)G266 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :L 1dd9A 262 :L T0547 110 :AG 1dd9A 264 :VE T0547 113 :KA 1dd9A 267 :YM Number of specific fragments extracted= 3 number of extra gaps= 3 total=85979 # 1z70X.106.148 read from T0547.t06.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)L108 (1z70X)K1223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1z70X)R1224 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YG 1z70X 1221 :AG T0547 110 :AGSKA 1z70X 1225 :LPTEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=85981 # 1wbhA.106.70 read from T0547.t06.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)G107 (1wbhA)A71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1wbhA)T73 because L (left) conformation "forbidden" or filtered. T0547 106 :Y 1wbhA 70 :G T0547 108 :L 1wbhA 72 :G T0547 110 :AGSKA 1wbhA 74 :VLNPQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=85984 # 1gmxA.106.1 read from T0547.t06.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)E109 (1gmxA)E5 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :YGL 1gmxA 2 :DQF T0547 110 :AGSKA 1gmxA 6 :CINVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=85986 # 1yzyA.106.214 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)A110 (1yzyA)G218 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGLE 1yzyA 214 :KLVT T0547 111 :GSKA 1yzyA 219 :GSGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=85988 # 1rlzA.106.124 read from T0547.t06.many.frag # found chain 1rlzA in template set Warning: unaligning (T0547)G111 (1rlzA)T130 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGLEA 1rlzA 125 :VDVLV T0547 112 :SKA 1rlzA 131 :TAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=85990 # 1y0zA.106.66 read from T0547.t06.many.frag # found chain 1y0zA in template set T0547 106 :YGLEAGSKA 1y0zA 67 :RGFPVNSAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=85991 # 1vliA.106.116 read from T0547.t06.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)L108 (1vliA)S107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1vliA)T108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1vliA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YG 1vliA 105 :FL T0547 110 :AG 1vliA 109 :VC T0547 113 :KA 1vliA 112 :EG Number of specific fragments extracted= 3 number of extra gaps= 2 total=85994 # 1zuwA.106.90 read from T0547.t06.many.frag # found chain 1zuwA in training set Warning: unaligning (T0547)G107 (1zuwA)P92 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :Y 1zuwA 91 :I T0547 108 :LEAGSKA 1zuwA 93 :VVGVIQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=85996 # 1izoA.106.43 read from T0547.t06.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)G107 (1izoA)N45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1izoA)M49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1izoA)T50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 (1izoA)G51 because S (epsilon) conformation "forbidden" or filtered. T0547 106 :Y 1izoA 44 :K T0547 108 :LEA 1izoA 46 :FIC T0547 114 :A 1izoA 52 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=85999 # 1u7nA.106.95 read from T0547.t06.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)S112 (1u7nA)N99 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :YGLEAG 1u7nA 93 :AIFSAG T0547 113 :KA 1u7nA 100 :TG Number of specific fragments extracted= 2 number of extra gaps= 1 total=86001 # 1n2zA.106.2 read from T0547.t06.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)G111 (1n2zA)L29 because G (3-10) conformation "forbidden" or filtered. T0547 106 :YGLEA 1n2zA 24 :PRVIT T0547 112 :SKA 1n2zA 30 :SPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86003 # 2acvA.106.138 read from T0547.t06.many.frag # found chain 2acvA in template set Warning: unaligning (T0547)G107 (2acvA)L140 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (2acvA)L142 because P (beta_P) conformation "forbidden" or filtered. T0547 106 :Y 2acvA 139 :Y T0547 108 :L 2acvA 141 :F T0547 110 :AGSKA 2acvA 143 :TSNVG Number of specific fragments extracted= 3 number of extra gaps= 2 total=86006 # 1wcwA.106.91 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 106 :YGLEAGSKA 1wcwA 92 :AFRLARGAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=86007 # 2a3nA.106.81 read from T0547.t06.many.frag # found chain 2a3nA in training set Warning: unaligning (T0547)E109 (2a3nA)Y73 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (2a3nA)E75 because E (beta_S) conformation "forbidden" or filtered. T0547 106 :YGL 2a3nA 70 :LPV T0547 110 :A 2a3nA 74 :V T0547 112 :SKA 2a3nA 76 :QAA Number of specific fragments extracted= 3 number of extra gaps= 2 total=86010 # 1vd6A.106.124 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)E109 (1vd6A)S128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1vd6A)S129 because Y (epsilon') conformation "forbidden" or filtered. T0547 106 :YGL 1vd6A 125 :VWV T0547 111 :GSKA 1vd6A 130 :FDPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86012 # 1vkfA.106.84 read from T0547.t06.many.frag # found chain 1vkfA in training set Warning: unaligning (T0547)A110 (1vkfA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1vkfA)I78 because G (3-10) conformation "forbidden" or filtered. T0547 106 :YGLE 1vkfA 73 :DGII T0547 112 :SKA 1vkfA 79 :KPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=86014 # 7odcA.107.85 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A110 (7odcA)C89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (7odcA)S91 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GLE 7odcA 86 :GFD T0547 111 :G 7odcA 90 :A T0547 113 :KAE 7odcA 92 :KTE Number of specific fragments extracted= 3 number of extra gaps= 2 total=86017 # 1yxyA.107.51 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 107 :GLEAGSKAE 1yxyA 52 :GIRANSVRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=86018 # 1knwA.107.70 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G111 (1knwA)V75 because G (3-10) conformation "forbidden" or filtered. T0547 107 :GLEA 1knwA 71 :KVDS T0547 112 :SKAE 1knwA 76 :SLGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=86020 # 1rcqA.107.53 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)E109 (1rcqA)A56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GL 1rcqA 54 :GF T0547 111 :G 1rcqA 58 :A T0547 113 :KAE 1rcqA 60 :IEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=86023 # 1thtA.107.108 read from T0547.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)G107 (1thtA)G109 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :LEAGSKAE 1thtA 110 :LIAASLSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86024 # 1twdA.107.4 read from T0547.t06.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)G111 (1twdA)Y9 because G (3-10) conformation "forbidden" or filtered. T0547 107 :GLEA 1twdA 5 :EICC T0547 112 :SKAE 1twdA 10 :SMEC Number of specific fragments extracted= 2 number of extra gaps= 1 total=86026 # 1jr2A.107.115 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G107 (1jr2A)S95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1jr2A)V99 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :LEA 1jr2A 96 :VYV T0547 112 :SKAE 1jr2A 100 :GNAT Number of specific fragments extracted= 2 number of extra gaps= 2 total=86028 # 1dd9A.107.165 read from T0547.t06.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)G107 (1dd9A)L261 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1dd9A)G266 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEAG 1dd9A 262 :LVVE T0547 113 :KAE 1dd9A 267 :YMD Number of specific fragments extracted= 2 number of extra gaps= 2 total=86030 # 1yk3A.107.43 read from T0547.t06.many.frag # found chain 1yk3A in template set Warning: unaligning (T0547)G107 (1yk3A)G44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A110 (1yk3A)V47 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :LE 1yk3A 45 :LR T0547 111 :GSKAE 1yk3A 48 :AQLTD Number of specific fragments extracted= 2 number of extra gaps= 2 total=86032 # 1mla.107.86 read from T0547.t06.many.frag # found chain 1mla in training set Warning: unaligning (T0547)G107 (1mla)M87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :L 1mla 88 :M T0547 110 :AGSKAE 1mla 90 :GHSLGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=86034 # 1wcwA.107.92 read from T0547.t06.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)G107 (1wcwA)F93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1wcwA)G98 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEAG 1wcwA 94 :RLAR T0547 113 :KAE 1wcwA 99 :AKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=86036 # 1gmxA.107.2 read from T0547.t06.many.frag # found chain 1gmxA in training set T0547 107 :GLEAGSKAE 1gmxA 3 :QFECINVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=86037 # 1n2zA.107.3 read from T0547.t06.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)G107 (1n2zA)R25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1n2zA)L29 because G (3-10) conformation "forbidden" or filtered. T0547 108 :LEA 1n2zA 26 :VIT T0547 112 :SKAE 1n2zA 30 :SPAN Number of specific fragments extracted= 2 number of extra gaps= 2 total=86039 # 1y0zA.107.67 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)G111 (1y0zA)N72 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1y0zA)S73 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GLEA 1y0zA 68 :GFPV T0547 113 :KAE 1y0zA 74 :ADD Number of specific fragments extracted= 2 number of extra gaps= 1 total=86041 # 1zc6A.107.103 read from T0547.t06.many.frag # found chain 1zc6A in template set T0547 107 :GLEAGSKAE 1zc6A 104 :RLSLATDGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=86042 # 1ybdA.107.110 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)L108 (1ybdA)A114 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :G 1ybdA 113 :I T0547 109 :EAGSKAE 1ybdA 115 :ETYARPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=86044 # 1vjrA.107.100 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)S112 (1vjrA)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GLEAG 1vjrA 89 :RIFLL T0547 113 :KAE 1vjrA 95 :TPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=86046 # 1u7nA.107.96 read from T0547.t06.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)G111 (1u7nA)G98 because P (beta_P) conformation "forbidden" or filtered. T0547 107 :GLEA 1u7nA 94 :IFSA T0547 112 :SKAE 1u7nA 99 :NTGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86048 # 1z70X.107.149 read from T0547.t06.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)L108 (1z70X)K1223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E109 (1z70X)R1224 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :G 1z70X 1222 :G T0547 110 :AGSKAE 1z70X 1225 :LPTEAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=86050 # 1vliA.107.117 read from T0547.t06.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)G107 (1vliA)L106 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1vliA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEAG 1vliA 107 :STVC T0547 113 :KAE 1vliA 112 :EGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=86052 # 1hdhA.107.43 read from T0547.t06.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)G111 (1hdhA)A48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1hdhA)S52 Warning: unaligning (T0547)E115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1hdhA)S52 T0547 107 :GLEA 1hdhA 44 :DFHT T0547 112 :S 1hdhA 49 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=86054 # 1l7dA.107.13 read from T0547.t06.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)G107 (1l7dA)D14 because G (3-10) conformation "forbidden" or filtered. T0547 108 :LEAGSKAE 1l7dA 15 :RVAISPEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=86055 # 1z5oA.107.13 read from T0547.t06.many.frag # found chain 1z5oA in template set T0547 107 :GLEAGSKAE 1z5oA 4 :GIIGAMEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=86056 # 1wbhA.107.71 read from T0547.t06.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)G111 (1wbhA)L75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1wbhA)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :GLEA 1wbhA 71 :AGTV T0547 113 :KAE 1wbhA 77 :PQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=86058 # 1vp4A.107.112 read from T0547.t06.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)G107 (1vp4A)I101 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :LEAGSKAE 1vp4A 102 :FTVGSQQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86059 # 1s3rA.107.212 read from T0547.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0547)L108 (1s3rA)I211 because Y (epsilon') conformation "forbidden" or filtered. T0547 107 :G 1s3rA 210 :S T0547 109 :EAGSKAE 1s3rA 212 :SAQSMSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=86061 # 2ar0A.107.95 read from T0547.t06.many.frag # found chain 2ar0A in template set Warning: unaligning (T0547)G111 (2ar0A)T100 because G (3-10) conformation "forbidden" or filtered. T0547 107 :GLEA 2ar0A 96 :STTI T0547 112 :SKAE 2ar0A 101 :EPKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=86063 # 2acvA.107.139 read from T0547.t06.many.frag # found chain 2acvA in template set Warning: unaligning (T0547)G111 (2acvA)S144 because P (beta_P) conformation "forbidden" or filtered. T0547 107 :GLEA 2acvA 140 :LFLT T0547 112 :SKAE 2acvA 145 :NVGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=86065 # 2aplA.107.68 read from T0547.t06.many.frag # found chain 2aplA in template set T0547 107 :GLEAGSKAE 2aplA 69 :GLHFSRYDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=86066 # 1pe9A.107.34 read from T0547.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)G107 (1pe9A)I35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1pe9A)T39 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1pe9A)N40 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEA 1pe9A 36 :YIV T0547 113 :KAE 1pe9A 41 :ISE Number of specific fragments extracted= 2 number of extra gaps= 2 total=86068 # 7odcA.108.86 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 108 :LEAGSKAEL 7odcA 87 :FDCASKTEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=86069 # 1yxyA.108.52 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 108 :LEAGSKAEL 1yxyA 53 :IRANSVRDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=86070 # 1knwA.108.71 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G111 (1knwA)V75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1knwA)S76 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEA 1knwA 72 :VDS T0547 113 :KAEL 1knwA 77 :LGEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=86072 # 1rcqA.108.54 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LE 1rcqA 55 :FA T0547 111 :G 1rcqA 58 :A T0547 113 :KAEL 1rcqA 60 :IEEG Number of specific fragments extracted= 3 number of extra gaps= 2 total=86075 # 1twdA.108.5 read from T0547.t06.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)S112 (1twdA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEAG 1twdA 6 :ICCY T0547 113 :KAEL 1twdA 11 :MECA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86077 # 1jr2A.108.116 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)G111 (1jr2A)V99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1jr2A)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 108 :LEA 1jr2A 96 :VYV T0547 113 :KAEL 1jr2A 101 :NATA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86079 # 1thtA.108.109 read from T0547.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)G111 (1thtA)A113 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :LEA 1thtA 110 :LIA T0547 112 :SKAEL 1thtA 114 :SLSAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=86081 # 1wcwA.108.93 read from T0547.t06.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)S112 (1wcwA)G98 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEAG 1wcwA 94 :RLAR T0547 113 :KAEL 1wcwA 99 :AKAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86083 # 1vliA.108.118 read from T0547.t06.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)L108 (1vliA)S107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1vliA)C110 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1vliA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :EA 1vliA 108 :TV T0547 113 :KAEL 1vliA 112 :EGSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=86085 # 1dd9A.108.166 read from T0547.t06.many.frag # found chain 1dd9A in training set T0547 108 :LEAGSKAEL 1dd9A 262 :LVVEGYMDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86086 # 1n2zA.108.4 read from T0547.t06.many.frag # found chain 1n2zA in template set T0547 108 :LEAGSKAEL 1n2zA 26 :VITLSPANT Number of specific fragments extracted= 1 number of extra gaps= 0 total=86087 # 1vjrA.108.101 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)E109 (1vjrA)F91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1vjrA)L93 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1vjrA)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :L 1vjrA 90 :I T0547 110 :A 1vjrA 92 :L T0547 113 :KAEL 1vjrA 95 :TPQL Number of specific fragments extracted= 3 number of extra gaps= 2 total=86090 # 1z5oA.108.14 read from T0547.t06.many.frag # found chain 1z5oA in template set T0547 108 :LEAGSKAEL 1z5oA 5 :IIGAMEEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86091 # 1mla.108.87 read from T0547.t06.many.frag # found chain 1mla in training set Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1mla)H91 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :L 1mla 88 :M T0547 110 :A 1mla 90 :G T0547 112 :SKAEL 1mla 92 :SLGEY Number of specific fragments extracted= 3 number of extra gaps= 2 total=86094 # 1pii.108.114 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)L108 (1pii)D115 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :EAGSKAEL 1pii 116 :FIIDPYQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=86095 # 1wbhA.108.72 read from T0547.t06.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)E109 (1wbhA)T73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1wbhA)L75 because G (3-10) conformation "forbidden" or filtered. T0547 108 :L 1wbhA 72 :G T0547 110 :A 1wbhA 74 :V T0547 112 :SKAEL 1wbhA 76 :NPQQL Number of specific fragments extracted= 3 number of extra gaps= 2 total=86098 # 1u7nA.108.97 read from T0547.t06.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)G111 (1u7nA)G98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1u7nA)N99 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :LEA 1u7nA 95 :FSA T0547 113 :KAEL 1u7nA 100 :TGAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86100 # 1ybdA.108.111 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)L108 (1ybdA)A114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1ybdA)Y117 because P (beta_P) conformation "forbidden" or filtered. T0547 109 :EA 1ybdA 115 :ET T0547 112 :SKAEL 1ybdA 118 :ARPKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=86102 # 1y0zA.108.68 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)S112 (1y0zA)S73 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEAG 1y0zA 69 :FPVN T0547 113 :KAEL 1y0zA 74 :ADDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=86104 # 1z70X.108.150 read from T0547.t06.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)L108 (1z70X)K1223 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :EAGSKAEL 1z70X 1224 :RLPTEAEW Number of specific fragments extracted= 1 number of extra gaps= 1 total=86105 # 1gmxA.108.3 read from T0547.t06.many.frag # found chain 1gmxA in training set Warning: unaligning (T0547)E109 (1gmxA)E5 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :L 1gmxA 4 :F T0547 110 :AGSKAEL 1gmxA 6 :CINVADA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86107 # 2acvA.108.140 read from T0547.t06.many.frag # found chain 2acvA in template set Warning: unaligning (T0547)G111 (2acvA)S144 because P (beta_P) conformation "forbidden" or filtered. T0547 108 :LEA 2acvA 141 :FLT T0547 112 :SKAEL 2acvA 145 :NVGFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86109 # 1l7dA.108.14 read from T0547.t06.many.frag # found chain 1l7dA in template set T0547 108 :LEAGSKAEL 1l7dA 15 :RVAISPEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86110 # 1t0fA.108.58 read from T0547.t06.many.frag # found chain 1t0fA in template set T0547 108 :LEAGSKAEL 1t0fA 56 :HHLLSDLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86111 # 1hdhA.108.44 read from T0547.t06.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)A110 (1hdhA)T47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1hdhA)S52 Warning: unaligning (T0547)E115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1hdhA)S52 T0547 108 :LE 1hdhA 45 :FH T0547 111 :GS 1hdhA 48 :AS T0547 116 :L 1hdhA 53 :P Number of specific fragments extracted= 3 number of extra gaps= 1 total=86114 # 1g8mA.108.30 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)G111 (1g8mA)A34 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LEA 1g8mA 31 :GLI T0547 112 :SKAEL 1g8mA 35 :SGGTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86116 # 1yk3A.108.44 read from T0547.t06.many.frag # found chain 1yk3A in template set Warning: unaligning (T0547)E109 (1yk3A)R46 because E (beta_S) conformation "forbidden" or filtered. T0547 108 :L 1yk3A 45 :L T0547 110 :AGSKAEL 1yk3A 47 :VAQLTDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86118 # 1zc6A.108.104 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)A110 (1zc6A)L107 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1zc6A)A108 because Y (epsilon') conformation "forbidden" or filtered. T0547 108 :LE 1zc6A 105 :LS T0547 112 :SKAEL 1zc6A 109 :TDGYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=86120 # 2ar0A.108.96 read from T0547.t06.many.frag # found chain 2ar0A in template set T0547 108 :LEAGSKAEL 2ar0A 97 :TTITEPKQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=86121 # 1w6kA.108.118 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 108 :LEAGSKAEL 1w6kA 119 :LPAGYREEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=86122 # 1yxyA.109.53 read from T0547.t06.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)G111 (1yxyA)N56 because E (beta_S) conformation "forbidden" or filtered. T0547 109 :EA 1yxyA 54 :RA T0547 112 :SKAELL 1yxyA 57 :SVRDIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=86124 # 7odcA.109.87 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G111 (7odcA)A90 because G (3-10) conformation "forbidden" or filtered. T0547 109 :EA 7odcA 88 :DC T0547 112 :SKAELL 7odcA 91 :SKTEIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=86126 # 1knwA.109.72 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G111 (1knwA)V75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1knwA)S76 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :EA 1knwA 73 :DS T0547 113 :KAELL 1knwA 77 :LGEIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=86128 # 1rcqA.109.55 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :E 1rcqA 56 :A T0547 111 :GSKAELL 1rcqA 58 :ACIEEGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86130 # 1twdA.109.6 read from T0547.t06.many.frag # found chain 1twdA in training set T0547 109 :EAGSKAELL 1twdA 7 :CCYSMECAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86131 # 1pii.109.115 read from T0547.t06.many.frag # found chain 1pii in template set T0547 109 :EAGSKAELL 1pii 116 :FIIDPYQIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=86132 # 1jr2A.109.117 read from T0547.t06.many.frag # found chain 1jr2A in template set T0547 109 :EAGSKAELL 1jr2A 97 :YVVGNATAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=86133 # 1dd9A.109.167 read from T0547.t06.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)S112 (1dd9A)G266 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :EAG 1dd9A 263 :VVE T0547 113 :KAELL 1dd9A 267 :YMDVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86135 # 1vliA.109.119 read from T0547.t06.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)S112 (1vliA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :EAG 1vliA 108 :TVC T0547 113 :KAELL 1vliA 112 :EGSAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=86137 # 1vjrA.109.102 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)E109 (1vjrA)F91 because P (beta_P) conformation "forbidden" or filtered. T0547 110 :AGSKAELL 1vjrA 92 :LLGTPQLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=86138 # 1n2zA.109.5 read from T0547.t06.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)G111 (1n2zA)L29 because G (3-10) conformation "forbidden" or filtered. T0547 109 :EA 1n2zA 27 :IT T0547 112 :SKAELL 1n2zA 30 :SPANTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=86140 # 1wcwA.109.94 read from T0547.t06.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)S112 (1wcwA)G98 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :EAG 1wcwA 95 :LAR T0547 113 :KAELL 1wcwA 99 :AKAAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=86142 # 1z5oA.109.15 read from T0547.t06.many.frag # found chain 1z5oA in template set T0547 109 :EAGSKAELL 1z5oA 6 :IGAMEEEVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=86143 # 1ct5A.109.66 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G111 (1ct5A)N70 because G (3-10) conformation "forbidden" or filtered. T0547 109 :EA 1ct5A 68 :GE T0547 112 :SKAELL 1ct5A 71 :YVQELI Number of specific fragments extracted= 2 number of extra gaps= 1 total=86145 # 1wbhA.109.73 read from T0547.t06.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)E109 (1wbhA)T73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1wbhA)L75 because G (3-10) conformation "forbidden" or filtered. T0547 110 :A 1wbhA 74 :V T0547 112 :SKAELL 1wbhA 76 :NPQQLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=86147 # 1y0zA.109.69 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)E109 (1y0zA)P70 because N (gamma') conformation "forbidden" or filtered. T0547 110 :AGSKAELL 1y0zA 71 :VNSADDFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=86148 # 1thtA.109.110 read from T0547.t06.many.frag # found chain 1thtA in template set T0547 109 :EAGSKAELL 1thtA 111 :IAASLSARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86149 # 1mla.109.88 read from T0547.t06.many.frag # found chain 1mla in training set Warning: unaligning (T0547)E109 (1mla)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :AGSKAELL 1mla 90 :GHSLGEYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=86150 # 1gmxA.109.4 read from T0547.t06.many.frag # found chain 1gmxA in training set T0547 109 :EAGSKAELL 1gmxA 5 :ECINVADAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=86151 # 1w6kA.109.119 read from T0547.t06.many.frag # found chain 1w6kA in template set Warning: unaligning (T0547)A110 (1w6kA)A121 because P (beta_P) conformation "forbidden" or filtered. T0547 109 :E 1w6kA 120 :P T0547 111 :GSKAELL 1w6kA 122 :GYREEIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86153 # 1pe9A.109.36 read from T0547.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)S112 (1pe9A)N40 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :EAG 1pe9A 37 :IVT T0547 113 :KAELL 1pe9A 41 :ISEFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=86155 # 1t0fA.109.59 read from T0547.t06.many.frag # found chain 1t0fA in template set T0547 109 :EAGSKAELL 1t0fA 57 :HLLSDLELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86156 # 1u7nA.109.98 read from T0547.t06.many.frag # found chain 1u7nA in template set T0547 109 :EAGSKAELL 1u7nA 96 :SAGNTGALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86157 # 1z70X.109.151 read from T0547.t06.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)E109 (1z70X)R1224 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :AGSKAELL 1z70X 1225 :LPTEAEWE Number of specific fragments extracted= 1 number of extra gaps= 1 total=86158 # 1yt8A.109.129 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)G111 (1yt8A)L132 because E (beta_S) conformation "forbidden" or filtered. T0547 109 :EA 1yt8A 130 :PS T0547 112 :SKAELL 1yt8A 133 :AAEEVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=86160 # 1hdhA.109.45 read from T0547.t06.many.frag # found chain 1hdhA in training set Warning: unaligning (T0547)A110 (1hdhA)T47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1hdhA)S52 Warning: unaligning (T0547)E115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1hdhA)S52 T0547 109 :E 1hdhA 46 :H T0547 111 :GS 1hdhA 48 :AS T0547 116 :LL 1hdhA 53 :PT Number of specific fragments extracted= 3 number of extra gaps= 1 total=86163 # 1otsA.109.104 read from T0547.t06.many.frag # found chain 1otsA in template set Warning: unaligning (T0547)A110 (1otsA)G106 because S (epsilon) conformation "forbidden" or filtered. T0547 109 :E 1otsA 105 :G T0547 111 :GSKAELL 1otsA 107 :SGIPEIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=86165 # 1g8mA.109.31 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)A110 (1g8mA)I33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1g8mA)A34 because Y (epsilon') conformation "forbidden" or filtered. T0547 109 :E 1g8mA 32 :L T0547 112 :SKAELL 1g8mA 35 :SGGTAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=86167 # 1ybdA.109.112 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)A110 (1ybdA)T116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1ybdA)Y117 because P (beta_P) conformation "forbidden" or filtered. T0547 109 :E 1ybdA 115 :E T0547 112 :SKAELL 1ybdA 118 :ARPKAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=86169 # 2acvA.109.141 read from T0547.t06.many.frag # found chain 2acvA in template set T0547 109 :EAGSKAELL 2acvA 142 :LTSNVGFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=86170 # 1knwA.110.73 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 110 :AGSKAELLL 1knwA 74 :SVSLGEIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=86171 # 1yxyA.110.54 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 110 :AGSKAELLL 1yxyA 55 :ANSVRDIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=86172 # 7odcA.110.88 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)S112 (7odcA)S91 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :AG 7odcA 89 :CA T0547 113 :KAELLL 7odcA 92 :KTEIQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86174 # 1rcqA.110.56 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A110 (1rcqA)V57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 111 :G 1rcqA 58 :A T0547 113 :KAELLL 1rcqA 60 :IEEGLE Number of specific fragments extracted= 2 number of extra gaps= 2 total=86176 # 1pii.110.116 read from T0547.t06.many.frag # found chain 1pii in template set T0547 110 :AGSKAELLL 1pii 117 :IIDPYQIYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86177 # 1dd9A.110.168 read from T0547.t06.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)S112 (1dd9A)G266 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :AG 1dd9A 264 :VE T0547 113 :KAELLL 1dd9A 267 :YMDVVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86179 # 1wcwA.110.95 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 110 :AGSKAELLL 1wcwA 96 :ARGAKAARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86180 # 1twdA.110.7 read from T0547.t06.many.frag # found chain 1twdA in training set T0547 110 :AGSKAELLL 1twdA 8 :CYSMECALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=86181 # 1z5oA.110.16 read from T0547.t06.many.frag # found chain 1z5oA in template set T0547 110 :AGSKAELLL 1z5oA 7 :GAMEEEVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86182 # 1n2zA.110.6 read from T0547.t06.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)G111 (1n2zA)L29 because G (3-10) conformation "forbidden" or filtered. T0547 110 :A 1n2zA 28 :T T0547 112 :SKAELLL 1n2zA 30 :SPANTEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86184 # 1jr2A.110.118 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)A110 (1jr2A)V98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1jr2A)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 111 :G 1jr2A 99 :V T0547 113 :KAELLL 1jr2A 101 :NATASL Number of specific fragments extracted= 2 number of extra gaps= 2 total=86186 # 1vjrA.110.103 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)S112 (1vjrA)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :AG 1vjrA 92 :LL T0547 113 :KAELLL 1vjrA 95 :TPQLKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=86188 # 1yt8A.110.130 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 110 :AGSKAELLL 1yt8A 131 :SLAAEEVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86189 # 2etvA.110.30 read from T0547.t06.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)G111 (2etvA)V44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (2etvA)G45 because S (epsilon) conformation "forbidden" or filtered. T0547 110 :A 2etvA 43 :A T0547 113 :KAELLL 2etvA 46 :PGALRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86191 # 1ct5A.110.67 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 110 :AGSKAELLL 1ct5A 69 :ENYVQELIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=86192 # 1vliA.110.120 read from T0547.t06.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)G111 (1vliA)C110 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1vliA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :A 1vliA 109 :V T0547 113 :KAELLL 1vliA 112 :EGSADL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86194 # 1otsA.110.105 read from T0547.t06.many.frag # found chain 1otsA in template set Warning: unaligning (T0547)A110 (1otsA)G106 because S (epsilon) conformation "forbidden" or filtered. T0547 111 :GSKAELLL 1otsA 107 :SGIPEIEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=86195 # 1pe9A.110.37 read from T0547.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)S112 (1pe9A)N40 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :AG 1pe9A 38 :VT T0547 113 :KAELLL 1pe9A 41 :ISEFTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=86197 # 1wbhA.110.74 read from T0547.t06.many.frag # found chain 1wbhA in training set T0547 110 :AGSKAELLL 1wbhA 74 :VLNPQQLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=86198 # 1w6kA.110.120 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 110 :AGSKAELLL 1w6kA 121 :AGYREEIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=86199 # 1y0zA.110.70 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)G111 (1y0zA)N72 because G (3-10) conformation "forbidden" or filtered. T0547 110 :A 1y0zA 71 :V T0547 112 :SKAELLL 1y0zA 73 :SADDFND Number of specific fragments extracted= 2 number of extra gaps= 1 total=86201 # 1bjt.110.80 read from T0547.t06.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)G111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1bjt)L490 T0547 112 :SKAELLL 1bjt 491 :KNAEIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86202 # 1m9xC.110.45 read from T0547.t06.many.frag # found chain 1m9xC in training set Warning: unaligning (T0547)A110 (1m9xC)G46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1m9xC)A47 because P (beta_P) conformation "forbidden" or filtered. T0547 112 :SKAELLL 1m9xC 48 :TPQDLNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=86203 # 2pvbA.110.35 read from T0547.t06.many.frag # found chain 2pvbA in training set Warning: unaligning (T0547)G111 (2pvbA)K38 because P (beta_P) conformation "forbidden" or filtered. T0547 110 :A 2pvbA 37 :S T0547 112 :SKAELLL 2pvbA 39 :SLDDVKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=86205 # 1u7nA.110.99 read from T0547.t06.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)G111 (1u7nA)G98 because P (beta_P) conformation "forbidden" or filtered. T0547 110 :A 1u7nA 97 :A T0547 112 :SKAELLL 1u7nA 99 :NTGALLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86207 # 1g8mA.110.32 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)A110 (1g8mA)I33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G111 (1g8mA)A34 because Y (epsilon') conformation "forbidden" or filtered. T0547 112 :SKAELLL 1g8mA 35 :SGGTATA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86208 # 1t0fA.110.60 read from T0547.t06.many.frag # found chain 1t0fA in template set Warning: unaligning (T0547)G111 (1t0fA)L59 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1t0fA)S60 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :A 1t0fA 58 :L T0547 113 :KAELLL 1t0fA 61 :DLELAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86210 # 1z70X.110.152 read from T0547.t06.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)G111 (1z70X)P1226 because P (beta_P) conformation "forbidden" or filtered. T0547 110 :A 1z70X 1225 :L T0547 112 :SKAELLL 1z70X 1227 :TEAEWEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=86212 # 1l7dA.110.16 read from T0547.t06.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)G111 (1l7dA)I18 because Y (epsilon') conformation "forbidden" or filtered. T0547 110 :A 1l7dA 17 :A T0547 112 :SKAELLL 1l7dA 19 :SPEVVKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=86214 # 1thtA.110.111 read from T0547.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0547)G111 (1thtA)A113 because E (beta_S) conformation "forbidden" or filtered. T0547 110 :A 1thtA 112 :A T0547 112 :SKAELLL 1thtA 114 :SLSARVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86216 # 1knwA.111.74 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G111 (1knwA)V75 because G (3-10) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1knwA 76 :SLGEIERA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86217 # 7odcA.111.89 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G111 (7odcA)A90 because G (3-10) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 7odcA 91 :SKTEIQLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=86218 # 1yxyA.111.55 read from T0547.t06.many.frag # found chain 1yxyA in training set Warning: unaligning (T0547)S112 (1yxyA)S57 because S (epsilon) conformation "forbidden" or filtered. T0547 111 :G 1yxyA 56 :N T0547 113 :KAELLLA 1yxyA 58 :VRDIKEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=86220 # 1pii.111.117 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G111 (1pii)I118 because G (3-10) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1pii 119 :DPYQIYLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86221 # 1rcqA.111.57 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 111 :G 1rcqA 58 :A T0547 113 :KAELLLA 1rcqA 60 :IEEGLEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86223 # 1z5oA.111.17 read from T0547.t06.many.frag # found chain 1z5oA in template set T0547 111 :GSKAELLLA 1z5oA 8 :AMEEEVTLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86224 # 1dd9A.111.169 read from T0547.t06.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)S112 (1dd9A)G266 because Y (epsilon') conformation "forbidden" or filtered. T0547 111 :G 1dd9A 265 :E T0547 113 :KAELLLA 1dd9A 267 :YMDVVAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86226 # 1twdA.111.8 read from T0547.t06.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)G111 (1twdA)Y9 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1twdA)S10 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLA 1twdA 11 :MECALTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86227 # 1wcwA.111.96 read from T0547.t06.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)S112 (1wcwA)G98 because Y (epsilon') conformation "forbidden" or filtered. T0547 111 :G 1wcwA 97 :R T0547 113 :KAELLLA 1wcwA 99 :AKAARAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86229 # 1yt8A.111.131 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 111 :GSKAELLLA 1yt8A 132 :LAAEEVQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86230 # 1wbhA.111.75 read from T0547.t06.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)G111 (1wbhA)L75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1wbhA)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLA 1wbhA 77 :PQQLAEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=86231 # 1bjt.111.81 read from T0547.t06.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)G111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1bjt)L490 T0547 112 :SKAELLLA 1bjt 491 :KNAEIQAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=86232 # 2etvA.111.31 read from T0547.t06.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)G111 (2etvA)V44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (2etvA)G45 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A114 (2etvA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 113 :K 2etvA 46 :P T0547 115 :ELLLA 2etvA 48 :ALRLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=86234 # 1n2zA.111.7 read from T0547.t06.many.frag # found chain 1n2zA in template set T0547 111 :GSKAELLLA 1n2zA 29 :LSPANTELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86235 # 1ct5A.111.68 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G111 (1ct5A)N70 because G (3-10) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1ct5A 71 :YVQELIEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=86236 # 1jr2A.111.119 read from T0547.t06.many.frag # found chain 1jr2A in template set T0547 111 :GSKAELLLA 1jr2A 99 :VGNATASLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86237 # 1otsA.111.106 read from T0547.t06.many.frag # found chain 1otsA in template set Warning: unaligning (T0547)S112 (1otsA)G108 because T (delta_L) conformation "forbidden" or filtered. T0547 111 :G 1otsA 107 :S T0547 113 :KAELLLA 1otsA 109 :IPEIEGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86239 # 1w6kA.111.121 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 111 :GSKAELLLA 1w6kA 122 :GYREEIVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=86240 # 1vjrA.111.104 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)G111 (1vjrA)L93 because N (gamma') conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1vjrA 94 :GTPQLKKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=86241 # 1vliA.111.121 read from T0547.t06.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)G111 (1vliA)C110 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S112 (1vliA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLA 1vliA 112 :EGSADLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=86242 # 1pe9A.111.38 read from T0547.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)G111 (1pe9A)T39 because G (3-10) conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1pe9A 40 :NISEFTSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86243 # 1m9xC.111.46 read from T0547.t06.many.frag # found chain 1m9xC in training set T0547 111 :GSKAELLLA 1m9xC 47 :ATPQDLNTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=86244 # 1l7dA.111.17 read from T0547.t06.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)G111 (1l7dA)I18 because Y (epsilon') conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1l7dA 19 :SPEVVKKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=86245 # 1y0zA.111.71 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)S112 (1y0zA)S73 because Y (epsilon') conformation "forbidden" or filtered. T0547 111 :G 1y0zA 72 :N T0547 113 :KAELLLA 1y0zA 74 :ADDFNDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86247 # 2cw6A.111.80 read from T0547.t06.many.frag # found chain 2cw6A in template set Warning: unaligning (T0547)S112 (2cw6A)N109 because Y (epsilon') conformation "forbidden" or filtered. T0547 111 :G 2cw6A 108 :P T0547 113 :KAELLLA 2cw6A 110 :LKGFEAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86249 # 1z70X.111.153 read from T0547.t06.many.frag # found chain 1z70X in training set T0547 111 :GSKAELLLA 1z70X 1226 :PTEAEWEYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=86250 # 1g8mA.111.33 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 111 :GSKAELLLA 1g8mA 34 :ASGGTATAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86251 # 2pvbA.111.36 read from T0547.t06.many.frag # found chain 2pvbA in training set T0547 111 :GSKAELLLA 2pvbA 38 :KSLDDVKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86252 # 1rkuA.111.55 read from T0547.t06.many.frag # found chain 1rkuA in training set Warning: unaligning (T0547)G111 (1rkuA)L55 because N (gamma') conformation "forbidden" or filtered. T0547 112 :SKAELLLA 1rkuA 56 :KLGDIQEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=86253 # 1ybdA.111.114 read from T0547.t06.many.frag # found chain 1ybdA in template set T0547 111 :GSKAELLLA 1ybdA 117 :YARPKAIQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=86254 # 1knwA.112.75 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 112 :SKAELLLAM 1knwA 76 :SLGEIERAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86255 # 7odcA.112.90 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 112 :SKAELLLAM 7odcA 91 :SKTEIQLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=86256 # 1pii.112.118 read from T0547.t06.many.frag # found chain 1pii in template set T0547 112 :SKAELLLAM 1pii 119 :DPYQIYLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=86257 # 1yxyA.112.56 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 112 :SKAELLLAM 1yxyA 57 :SVRDIKEIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=86258 # 1rcqA.112.58 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)S112 (1rcqA)C59 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1rcqA 60 :IEEGLELR Number of specific fragments extracted= 1 number of extra gaps= 1 total=86259 # 1twdA.112.9 read from T0547.t06.many.frag # found chain 1twdA in training set T0547 112 :SKAELLLAM 1twdA 10 :SMECALTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=86260 # 1dd9A.112.170 read from T0547.t06.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)S112 (1dd9A)G266 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1dd9A 267 :YMDVVALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86261 # 1z5oA.112.18 read from T0547.t06.many.frag # found chain 1z5oA in template set T0547 112 :SKAELLLAM 1z5oA 9 :MEEEVTLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=86262 # 1wbhA.112.76 read from T0547.t06.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)S112 (1wbhA)N76 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1wbhA 77 :PQQLAEVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=86263 # 1wcwA.112.97 read from T0547.t06.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)S112 (1wcwA)G98 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1wcwA 99 :AKAARALK Number of specific fragments extracted= 1 number of extra gaps= 1 total=86264 # 1bjt.112.82 read from T0547.t06.many.frag # found chain 1bjt in template set T0547 112 :SKAELLLAM 1bjt 491 :KNAEIQAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=86265 # 1pe9A.112.39 read from T0547.t06.many.frag # found chain 1pe9A in training set T0547 112 :SKAELLLAM 1pe9A 40 :NISEFTSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86266 # 1yt8A.112.132 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)S112 (1yt8A)A133 because P (beta_P) conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1yt8A 134 :AEEVQALL Number of specific fragments extracted= 1 number of extra gaps= 1 total=86267 # 1n2zA.112.8 read from T0547.t06.many.frag # found chain 1n2zA in template set T0547 112 :SKAELLLAM 1n2zA 30 :SPANTELAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=86268 # 1ct5A.112.69 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 112 :SKAELLLAM 1ct5A 71 :YVQELIEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86269 # 1jr2A.112.120 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)S112 (1jr2A)G100 because S (epsilon) conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1jr2A 101 :NATASLVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=86270 # 1otsA.112.107 read from T0547.t06.many.frag # found chain 1otsA in template set T0547 112 :SKAELLLAM 1otsA 108 :GIPEIEGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86271 # 1w6kA.112.122 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 112 :SKAELLLAM 1w6kA 123 :YREEIVRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86272 # 2etvA.112.32 read from T0547.t06.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)A114 (2etvA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 112 :SK 2etvA 45 :GP T0547 115 :ELLLAM 2etvA 48 :ALRLIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86274 # 1vliA.112.122 read from T0547.t06.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)S112 (1vliA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1vliA 112 :EGSADLLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=86275 # 2cw6A.112.81 read from T0547.t06.many.frag # found chain 2cw6A in template set Warning: unaligning (T0547)S112 (2cw6A)N109 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLAM 2cw6A 110 :LKGFEAAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=86276 # 1l7dA.112.18 read from T0547.t06.many.frag # found chain 1l7dA in template set T0547 112 :SKAELLLAM 1l7dA 19 :SPEVVKKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86277 # 1m9xC.112.47 read from T0547.t06.many.frag # found chain 1m9xC in training set T0547 112 :SKAELLLAM 1m9xC 48 :TPQDLNTML Number of specific fragments extracted= 1 number of extra gaps= 0 total=86278 # 1vjrA.112.105 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 112 :SKAELLLAM 1vjrA 94 :GTPQLKKVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=86279 # 1xg4A.112.25 read from T0547.t06.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)S112 (1xg4A)N27 because Y (epsilon') conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1xg4A 28 :ANHALLAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=86280 # 1g8mA.112.34 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 112 :SKAELLLAM 1g8mA 35 :SGGTATALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=86281 # 1z70X.112.154 read from T0547.t06.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)S112 (1z70X)T1227 because P (beta_P) conformation "forbidden" or filtered. T0547 113 :KAELLLAM 1z70X 1228 :EAEWEYSC Number of specific fragments extracted= 1 number of extra gaps= 1 total=86282 # 1y0zA.112.72 read from T0547.t06.many.frag # found chain 1y0zA in template set T0547 112 :SKAELLLAM 1y0zA 73 :SADDFNDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86283 # 2fokA.112.195 read from T0547.t06.many.frag # found chain 2fokA in template set T0547 112 :SKAELLLAM 2fokA 196 :PEGILLDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86284 # 1ybdA.112.115 read from T0547.t06.many.frag # found chain 1ybdA in template set T0547 112 :SKAELLLAM 1ybdA 118 :ARPKAIQYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86285 # 1knwA.113.76 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 113 :KAELLLAMA 1knwA 77 :LGEIERALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86286 # 1rcqA.113.59 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 113 :KAELLLAMA 1rcqA 60 :IEEGLELRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=86287 # 7odcA.113.91 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 113 :KAELLLAMA 7odcA 92 :KTEIQLVQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=86288 # 1pii.113.119 read from T0547.t06.many.frag # found chain 1pii in template set T0547 113 :KAELLLAMA 1pii 120 :PYQIYLARY Number of specific fragments extracted= 1 number of extra gaps= 0 total=86289 # 1twdA.113.10 read from T0547.t06.many.frag # found chain 1twdA in training set T0547 113 :KAELLLAMA 1twdA 11 :MECALTAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=86290 # 1yxyA.113.57 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 113 :KAELLLAMA 1yxyA 58 :VRDIKEIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86291 # 1wbhA.113.77 read from T0547.t06.many.frag # found chain 1wbhA in training set T0547 113 :KAELLLAMA 1wbhA 77 :PQQLAEVTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=86292 # 1dd9A.113.171 read from T0547.t06.many.frag # found chain 1dd9A in training set T0547 113 :KAELLLAMA 1dd9A 267 :YMDVVALAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=86293 # 1pe9A.113.40 read from T0547.t06.many.frag # found chain 1pe9A in training set T0547 113 :KAELLLAMA 1pe9A 41 :ISEFTSALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=86294 # 1wcwA.113.98 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 113 :KAELLLAMA 1wcwA 99 :AKAARALKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=86295 # 1n2zA.113.9 read from T0547.t06.many.frag # found chain 1n2zA in template set T0547 113 :KAELLLAMA 1n2zA 31 :PANTELAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86296 # 1yt8A.113.133 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 113 :KAELLLAMA 1yt8A 134 :AEEVQALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=86297 # 2cw6A.113.82 read from T0547.t06.many.frag # found chain 2cw6A in template set T0547 113 :KAELLLAMA 2cw6A 110 :LKGFEAAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86298 # 1otsA.113.108 read from T0547.t06.many.frag # found chain 1otsA in template set T0547 113 :KAELLLAMA 1otsA 109 :IPEIEGALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=86299 # 1jr2A.113.121 read from T0547.t06.many.frag # found chain 1jr2A in template set T0547 113 :KAELLLAMA 1jr2A 101 :NATASLVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=86300 # 1ct5A.113.70 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 113 :KAELLLAMA 1ct5A 72 :VQELIEKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=86301 # 1m9xC.113.48 read from T0547.t06.many.frag # found chain 1m9xC in training set T0547 113 :KAELLLAMA 1m9xC 49 :PQDLNTMLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=86302 # 1z5oA.113.19 read from T0547.t06.many.frag # found chain 1z5oA in template set T0547 113 :KAELLLAMA 1z5oA 10 :EEEVTLLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=86303 # 1xg4A.113.26 read from T0547.t06.many.frag # found chain 1xg4A in training set T0547 113 :KAELLLAMA 1xg4A 28 :ANHALLAQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=86304 # 1g8mA.113.35 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 113 :KAELLLAMA 1g8mA 36 :GGTATALRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=86305 # 1vliA.113.123 read from T0547.t06.many.frag # found chain 1vliA in template set T0547 113 :KAELLLAMA 1vliA 112 :EGSADLLQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=86306 # 2etvA.113.33 read from T0547.t06.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)A114 (2etvA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 113 :K 2etvA 46 :P T0547 115 :ELLLAMA 2etvA 48 :ALRLIAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=86308 # 1w6kA.113.123 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 113 :KAELLLAMA 1w6kA 124 :REEIVRYLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=86309 # 1l7dA.113.19 read from T0547.t06.many.frag # found chain 1l7dA in template set T0547 113 :KAELLLAMA 1l7dA 20 :PEVVKKLVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=86310 # 1z70X.113.155 read from T0547.t06.many.frag # found chain 1z70X in training set T0547 113 :KAELLLAMA 1z70X 1228 :EAEWEYSCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=86311 # 1bjt.113.83 read from T0547.t06.many.frag # found chain 1bjt in template set T0547 113 :KAELLLAMA 1bjt 492 :NAEIQAIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=86312 # 1vjrA.113.106 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 113 :KAELLLAMA 1vjrA 95 :TPQLKKVFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=86313 # 1vd6A.113.131 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 113 :KAELLLAMA 1vd6A 132 :PLALLALRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=86314 # 1ds1A.113.9 read from T0547.t06.many.frag # found chain 1ds1A in training set T0547 113 :KAELLLAMA 1ds1A 10 :GPELRALAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86315 # 2azeA.113.120 read from T0547.t06.many.frag # found chain 2azeA in template set T0547 113 :KAELLLAMA 2azeA 316 :AEDLKMARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=86316 # 1knwA.114.77 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 114 :AELLLAMAY 1knwA 78 :GEIERALAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86317 # 7odcA.114.92 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 114 :AELLLAMAY 7odcA 93 :TEIQLVQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86318 # 1rcqA.114.60 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 114 :AELLLAMAY 1rcqA 61 :EEGLELREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86319 # 1twdA.114.11 read from T0547.t06.many.frag # found chain 1twdA in training set T0547 114 :AELLLAMAY 1twdA 12 :ECALTAQQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=86320 # 1pii.114.120 read from T0547.t06.many.frag # found chain 1pii in template set T0547 114 :AELLLAMAY 1pii 121 :YQIYLARYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=86321 # 1yxyA.114.58 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 114 :AELLLAMAY 1yxyA 59 :RDIKEIQAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=86322 # 1pe9A.114.41 read from T0547.t06.many.frag # found chain 1pe9A in training set T0547 114 :AELLLAMAY 1pe9A 42 :SEFTSALSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86323 # 1wcwA.114.99 read from T0547.t06.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)Y122 (1wcwA)A108 because G (3-10) conformation "forbidden" or filtered. T0547 114 :AELLLAMA 1wcwA 100 :KAARALKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=86324 # 1wbhA.114.78 read from T0547.t06.many.frag # found chain 1wbhA in training set T0547 114 :AELLLAMAY 1wbhA 78 :QQLAEVTEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86325 # 1dd9A.114.172 read from T0547.t06.many.frag # found chain 1dd9A in training set T0547 114 :AELLLAMAY 1dd9A 268 :MDVVALAQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=86326 # 2cw6A.114.83 read from T0547.t06.many.frag # found chain 2cw6A in template set T0547 114 :AELLLAMAY 2cw6A 111 :KGFEAAVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86327 # 1n2zA.114.10 read from T0547.t06.many.frag # found chain 1n2zA in template set T0547 114 :AELLLAMAY 1n2zA 32 :ANTELAFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86328 # 1jr2A.114.122 read from T0547.t06.many.frag # found chain 1jr2A in template set T0547 114 :AELLLAMAY 1jr2A 102 :ATASLVSKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=86329 # 1g8mA.114.36 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 114 :AELLLAMAY 1g8mA 37 :GTATALRDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86330 # 1xg4A.114.27 read from T0547.t06.many.frag # found chain 1xg4A in training set T0547 114 :AELLLAMAY 1xg4A 29 :NHALLAQRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86331 # 1m9xC.114.49 read from T0547.t06.many.frag # found chain 1m9xC in training set T0547 114 :AELLLAMAY 1m9xC 50 :QDLNTMLNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=86332 # 1l7dA.114.20 read from T0547.t06.many.frag # found chain 1l7dA in template set T0547 114 :AELLLAMAY 1l7dA 21 :EVVKKLVGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86333 # 1otsA.114.109 read from T0547.t06.many.frag # found chain 1otsA in template set Warning: unaligning (T0547)Y122 (1otsA)D118 because L (left) conformation "forbidden" or filtered. T0547 114 :AELLLAMA 1otsA 110 :PEIEGALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=86334 # 1vd6A.114.132 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 114 :AELLLAMAY 1vd6A 133 :LALLALRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86335 # 1yt8A.114.134 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 114 :AELLLAMAY 1yt8A 135 :EEVQALLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86336 # 1eyeA.114.90 read from T0547.t06.many.frag # found chain 1eyeA in template set T0547 114 :AELLLAMAY 1eyeA 91 :DVARAALQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=86337 # 2azeA.114.121 read from T0547.t06.many.frag # found chain 2azeA in template set T0547 114 :AELLLAMAY 2azeA 317 :EDLKMARSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86338 # 2etvA.114.34 read from T0547.t06.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)A114 (2etvA)G47 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y122 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)A57 T0547 115 :ELLLAMA 2etvA 48 :ALRLIAY Number of specific fragments extracted= 1 number of extra gaps= 1 total=86339 # 1odzA.114.88 read from T0547.t06.many.frag # found chain 1odzA in training set T0547 114 :AELLLAMAY 1odzA 126 :AQVKKAYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=86340 # 1vliA.114.124 read from T0547.t06.many.frag # found chain 1vliA in template set T0547 114 :AELLLAMAY 1vliA 113 :GSADLLQST Number of specific fragments extracted= 1 number of extra gaps= 0 total=86341 # 1zuwA.114.98 read from T0547.t06.many.frag # found chain 1zuwA in training set T0547 114 :AELLLAMAY 1zuwA 99 :PGARAAIKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86342 # 1w6kA.114.124 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 114 :AELLLAMAY 1w6kA 125 :EEIVRYLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=86343 # 1z70X.114.156 read from T0547.t06.many.frag # found chain 1z70X in training set T0547 114 :AELLLAMAY 1z70X 1229 :AEWEYSCRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=86344 # 1gkpA.114.134 read from T0547.t06.many.frag # found chain 1gkpA in training set T0547 114 :AELLLAMAY 1gkpA 136 :GQLREIVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=86345 # 1n8kA.114.205 read from T0547.t06.many.frag # found chain 1n8kA in training set T0547 114 :AELLLAMAY 1n8kA 206 :SVIMGCKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86346 # 1knwA.115.78 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N123 (1knwA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1knwA 79 :EIERALAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86347 # 1rcqA.115.61 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N123 (1rcqA)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1rcqA 62 :EGLELREA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86348 # 7odcA.115.93 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N123 (7odcA)G102 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 7odcA 94 :EIQLVQGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=86349 # 1twdA.115.12 read from T0547.t06.many.frag # found chain 1twdA in training set T0547 115 :ELLLAMAYN 1twdA 13 :CALTAQQNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=86350 # 1pii.115.121 read from T0547.t06.many.frag # found chain 1pii in template set T0547 115 :ELLLAMAYN 1pii 122 :QIYLARYYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=86351 # 1dd9A.115.173 read from T0547.t06.many.frag # found chain 1dd9A in training set T0547 115 :ELLLAMAYN 1dd9A 269 :DVVALAQYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=86352 # 1pe9A.115.42 read from T0547.t06.many.frag # found chain 1pe9A in training set T0547 115 :ELLLAMAYN 1pe9A 43 :EFTSALSAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=86353 # 1wcwA.115.100 read from T0547.t06.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)N123 (1wcwA)G109 because L (left) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1wcwA 101 :AARALKEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86354 # 1wbhA.115.79 read from T0547.t06.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)N123 (1wbhA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1wbhA 79 :QLAEVTEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86355 # 2cw6A.115.84 read from T0547.t06.many.frag # found chain 2cw6A in template set Warning: unaligning (T0547)N123 (2cw6A)G120 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 2cw6A 112 :GFEAAVAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86356 # 1n2zA.115.11 read from T0547.t06.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)Y122 (1n2zA)A40 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (1n2zA)G41 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMA 1n2zA 33 :NTELAFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86357 # 1jr2A.115.123 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)N123 (1jr2A)G111 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1jr2A 103 :TASLVSKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=86358 # 1g8mA.115.37 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)N123 (1g8mA)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1g8mA 38 :TATALRDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86359 # 1yxyA.115.59 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 115 :ELLLAMAYN 1yxyA 60 :DIKEIQAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=86360 # 1xg4A.115.28 read from T0547.t06.many.frag # found chain 1xg4A in training set T0547 115 :ELLLAMAYN 1xg4A 30 :HALLAQRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=86361 # 1odzA.115.89 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)N123 (1odzA)G135 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1odzA 127 :QVKKAYAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=86362 # 1otsA.115.110 read from T0547.t06.many.frag # found chain 1otsA in template set T0547 115 :ELLLAMAYN 1otsA 111 :EIEGALEDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=86363 # 1gkpA.115.135 read from T0547.t06.many.frag # found chain 1gkpA in training set Warning: unaligning (T0547)N123 (1gkpA)G145 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1gkpA 137 :QLREIVAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=86364 # 1l7dA.115.21 read from T0547.t06.many.frag # found chain 1l7dA in template set T0547 115 :ELLLAMAYN 1l7dA 22 :VVKKLVGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=86365 # 1eyeA.115.91 read from T0547.t06.many.frag # found chain 1eyeA in template set Warning: unaligning (T0547)N123 (1eyeA)G100 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1eyeA 92 :VARAALQN Number of specific fragments extracted= 1 number of extra gaps= 1 total=86366 # 2etvA.115.35 read from T0547.t06.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)Y122 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)A57 T0547 115 :ELLLAMA 2etvA 48 :ALRLIAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=86367 # 1yt8A.115.135 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)N123 (1yt8A)R144 because L (left) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1yt8A 136 :EVQALLDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86368 # 1ccwB.115.235 read from T0547.t06.many.frag # found chain 1ccwB in training set Warning: unaligning (T0547)N123 (1ccwB)G244 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMAY 1ccwB 236 :EALLAAEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=86369 # 1m9xC.115.50 read from T0547.t06.many.frag # found chain 1m9xC in training set T0547 115 :ELLLAMAYN 1m9xC 51 :DLNTMLNTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86370 # 1n8kA.115.206 read from T0547.t06.many.frag # found chain 1n8kA in training set T0547 115 :ELLLAMAYN 1n8kA 207 :VIMGCKAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=86371 # 1vd6A.115.133 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 115 :ELLLAMAYN 1vd6A 134 :ALLALRKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86372 # 2azeA.115.122 read from T0547.t06.many.frag # found chain 2azeA in template set T0547 115 :ELLLAMAYN 2azeA 318 :DLKMARSLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86373 # 1z70X.115.157 read from T0547.t06.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)Y122 (1z70X)G1237 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (1z70X)G1238 because T (delta_L) conformation "forbidden" or filtered. T0547 115 :ELLLAMA 1z70X 1230 :EWEYSCR Number of specific fragments extracted= 1 number of extra gaps= 1 total=86374 # 1vliA.115.125 read from T0547.t06.many.frag # found chain 1vliA in template set T0547 115 :ELLLAMAYN 1vliA 114 :SADLLQSTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=86375 # 1zuwA.115.99 read from T0547.t06.many.frag # found chain 1zuwA in training set T0547 115 :ELLLAMAYN 1zuwA 100 :GARAAIKVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=86376 # 1rcqA.116.62 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N123 (1rcqA)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1rcqA 63 :GLELREA T0547 124 :N 1rcqA 71 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=86378 # 7odcA.116.94 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 116 :LLLAMAYNN 7odcA 95 :IQLVQGLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86379 # 1knwA.116.79 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N123 (1knwA)G87 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1knwA)Y88 because P (beta_P) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1knwA 80 :IERALAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86380 # 1pe9A.116.43 read from T0547.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)N123 (1pe9A)G51 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1pe9A)A52 because G (3-10) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1pe9A 44 :FTSALSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86381 # 1wcwA.116.101 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 116 :LLLAMAYNN 1wcwA 102 :ARALKEAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86382 # 1dd9A.116.174 read from T0547.t06.many.frag # found chain 1dd9A in training set T0547 116 :LLLAMAYNN 1dd9A 270 :VVALAQYGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=86383 # 1wbhA.116.80 read from T0547.t06.many.frag # found chain 1wbhA in training set T0547 116 :LLLAMAYNN 1wbhA 80 :LAEVTEAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86384 # 1twdA.116.13 read from T0547.t06.many.frag # found chain 1twdA in training set T0547 116 :LLLAMAYNN 1twdA 14 :ALTAQQNGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86385 # 1n2zA.116.12 read from T0547.t06.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)N123 (1n2zA)G41 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1n2zA 34 :TELAFAA T0547 124 :N 1n2zA 42 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=86387 # 1pii.116.122 read from T0547.t06.many.frag # found chain 1pii in template set T0547 116 :LLLAMAYNN 1pii 123 :IYLARYYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86388 # 1g8mA.116.38 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)N123 (1g8mA)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1g8mA 39 :ATALRDA T0547 124 :N 1g8mA 47 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=86390 # 2cw6A.116.85 read from T0547.t06.many.frag # found chain 2cw6A in template set Warning: unaligning (T0547)N124 (2cw6A)A121 because P (beta_P) conformation "forbidden" or filtered. T0547 116 :LLLAMAYN 2cw6A 113 :FEAAVAAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=86391 # 1ccwB.116.236 read from T0547.t06.many.frag # found chain 1ccwB in training set Warning: unaligning (T0547)Y122 (1ccwB)Q243 because G (3-10) conformation "forbidden" or filtered. T0547 116 :LLLAMA 1ccwB 237 :ALLAAE T0547 123 :NN 1ccwB 244 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86393 # 1jr2A.116.124 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)N124 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 T0547 116 :LLLAMAYN 1jr2A 104 :ASLVSKIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=86394 # 1xg4A.116.29 read from T0547.t06.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)N123 (1xg4A)G38 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1xg4A)Y39 because P (beta_P) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1xg4A 31 :ALLAQRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86395 # 1yt8A.116.136 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)N123 (1yt8A)R144 because L (left) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1yt8A 137 :VQALLDA T0547 124 :N 1yt8A 145 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=86397 # 1rlzA.116.220 read from T0547.t06.many.frag # found chain 1rlzA in template set Warning: unaligning (T0547)N123 (1rlzA)H228 because L (left) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1rlzA 221 :YYWAQKN T0547 124 :N 1rlzA 229 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=86399 # 1otsA.116.111 read from T0547.t06.many.frag # found chain 1otsA in template set Warning: unaligning (T0547)N124 (1otsA)R120 because E (beta_S) conformation "forbidden" or filtered. T0547 116 :LLLAMAYN 1otsA 112 :IEGALEDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=86400 # 2d13A.116.20 read from T0547.t06.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)N123 (2d13A)G28 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (2d13A)L29 because P (beta_P) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 2d13A 21 :LYWALKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=86401 # 2etvA.116.36 read from T0547.t06.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)Y122 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)A57 Warning: unaligning (T0547)N124 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2etvA)A57 T0547 116 :LLLAMA 2etvA 49 :LRLIAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=86402 # 1yxyA.116.60 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 116 :LLLAMAYNN 1yxyA 61 :IKEIQAITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=86403 # 1n8kA.116.207 read from T0547.t06.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)N124 (1n8kA)A216 because P (beta_P) conformation "forbidden" or filtered. T0547 116 :LLLAMAYN 1n8kA 208 :IMGCKAAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=86404 # 1m9xC.116.51 read from T0547.t06.many.frag # found chain 1m9xC in training set T0547 116 :LLLAMAYNN 1m9xC 52 :LNTMLNTVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=86405 # 1odzA.116.90 read from T0547.t06.many.frag # found chain 1odzA in training set T0547 116 :LLLAMAYNN 1odzA 128 :VKKAYARGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=86406 # 1muwA.116.121 read from T0547.t06.many.frag # found chain 1muwA in training set T0547 116 :LLLAMAYNN 1muwA 122 :IDLAVELGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86407 # 1eyeA.116.92 read from T0547.t06.many.frag # found chain 1eyeA in template set Warning: unaligning (T0547)N123 (1eyeA)G100 because T (delta_L) conformation "forbidden" or filtered. T0547 116 :LLLAMAY 1eyeA 93 :ARAALQN T0547 124 :N 1eyeA 101 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=86409 # 1f1eA.116.9 read from T0547.t06.many.frag # found chain 1f1eA in training set T0547 116 :LLLAMAYNN 1f1eA 10 :IERIFRQGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=86410 # 1vliA.116.126 read from T0547.t06.many.frag # found chain 1vliA in template set T0547 116 :LLLAMAYNN 1vliA 115 :ADLLQSTSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=86411 # 1nvmB.116.44 read from T0547.t06.many.frag # found chain 1nvmB in training set T0547 116 :LLLAMAYNN 1nvmB 45 :LARAQRMGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86412 # 2fokA.116.199 read from T0547.t06.many.frag # found chain 2fokA in template set T0547 116 :LLLAMAYNN 2fokA 200 :LLDTLANAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=86413 # 1rcqA.117.63 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 117 :LLAMAYNNE 1rcqA 64 :LELREAGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=86414 # 1wcwA.117.102 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 117 :LLAMAYNNE 1wcwA 103 :RALKEAGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=86415 # 1knwA.117.80 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 117 :LLAMAYNNE 1knwA 81 :ERALAAGYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=86416 # 7odcA.117.95 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E125 (7odcA)P104 because P (beta_P) conformation "forbidden" or filtered. T0547 117 :LLAMAYNN 7odcA 96 :QLVQGLGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=86417 # 1pe9A.117.44 read from T0547.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)N123 (1pe9A)G51 because S (epsilon) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1pe9A 45 :TSALSA T0547 124 :NE 1pe9A 52 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=86419 # 1n2zA.117.13 read from T0547.t06.many.frag # found chain 1n2zA in template set T0547 117 :LLAMAYNNE 1n2zA 35 :ELAFAAGIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=86420 # 2d13A.117.21 read from T0547.t06.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)N123 (2d13A)G28 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (2d13A)L29 because P (beta_P) conformation "forbidden" or filtered. T0547 117 :LLAMAY 2d13A 22 :YWALKS T0547 125 :E 2d13A 30 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=86422 # 1dd9A.117.175 read from T0547.t06.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)Y122 (1dd9A)Y276 because G (3-10) conformation "forbidden" or filtered. T0547 117 :LLAMA 1dd9A 271 :VALAQ T0547 123 :NNE 1dd9A 277 :GIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=86424 # 1rlzA.117.221 read from T0547.t06.many.frag # found chain 1rlzA in template set T0547 117 :LLAMAYNNE 1rlzA 222 :YWAQKNHIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=86425 # 1f1eA.117.10 read from T0547.t06.many.frag # found chain 1f1eA in training set T0547 117 :LLAMAYNNE 1f1eA 11 :ERIFRQGIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=86426 # 1yt8A.117.137 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 117 :LLAMAYNNE 1yt8A 138 :QALLDARAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=86427 # 1n8kA.117.208 read from T0547.t06.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)N123 (1n8kA)G215 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1n8kA 209 :MGCKAA T0547 124 :NE 1n8kA 216 :AA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86429 # 1ccwB.117.237 read from T0547.t06.many.frag # found chain 1ccwB in training set T0547 117 :LLAMAYNNE 1ccwB 238 :LLAAEQGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=86430 # 1wbhA.117.81 read from T0547.t06.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)N123 (1wbhA)G87 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1wbhA)A88 because P (beta_P) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1wbhA 81 :AEVTEA T0547 125 :E 1wbhA 89 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=86432 # 1g8mA.117.39 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 117 :LLAMAYNNE 1g8mA 40 :TALRDAGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=86433 # 1twdA.117.14 read from T0547.t06.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)N123 (1twdA)G21 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1twdA 15 :LTAQQN T0547 124 :NE 1twdA 22 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=86435 # 1nvmB.117.45 read from T0547.t06.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)N123 (1nvmB)G52 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1nvmB 46 :ARAQRM T0547 124 :NE 1nvmB 53 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=86437 # 1pii.117.123 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)N123 (1pii)Q130 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1pii 124 :YLARYY T0547 124 :NE 1pii 131 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=86439 # 1muwA.117.122 read from T0547.t06.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)N123 (1muwA)G129 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1muwA 123 :DLAVEL T0547 124 :NE 1muwA 130 :AK Number of specific fragments extracted= 2 number of extra gaps= 1 total=86441 # 2fupA.117.74 read from T0547.t06.many.frag # found chain 2fupA in training set T0547 117 :LLAMAYNNE 2fupA 63 :EILREAGVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=86442 # 1jihA.117.63 read from T0547.t06.many.frag # found chain 1jihA in template set Warning: unaligning (T0547)N123 (1jihA)G70 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1jihA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0547 117 :LLAMAY 1jihA 64 :YAARKY T0547 124 :N 1jihA 71 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=86444 # 2etvA.117.37 read from T0547.t06.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)Y122 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)A57 Warning: unaligning (T0547)N124 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2etvA)A57 T0547 117 :LLAMA 2etvA 50 :RLIAY T0547 125 :E 2etvA 58 :T Number of specific fragments extracted= 2 number of extra gaps= 0 total=86446 # 1jr2A.117.125 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)N124 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 Warning: unaligning (T0547)E125 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)D113 T0547 117 :LLAMAYN 1jr2A 105 :SLVSKIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=86447 # 1lnsA.117.59 read from T0547.t06.many.frag # found chain 1lnsA in template set Warning: unaligning (T0547)N123 (1lnsA)S66 because G (3-10) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1lnsA 60 :IEFLKS T0547 124 :NE 1lnsA 67 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=86449 # 1xg4A.117.30 read from T0547.t06.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)Y122 (1xg4A)A37 because G (3-10) conformation "forbidden" or filtered. T0547 117 :LLAMA 1xg4A 32 :LLAQR T0547 123 :NNE 1xg4A 38 :GYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=86451 # 1zxxA.117.86 read from T0547.t06.many.frag # found chain 1zxxA in template set Warning: unaligning (T0547)N123 (1zxxA)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1zxxA 87 :EQLKKH T0547 124 :NE 1zxxA 94 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=86453 # 1m1nA.117.238 read from T0547.t06.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)N123 (1m1nA)G246 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1m1nA 240 :ILLEEM T0547 124 :NE 1m1nA 247 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=86455 # 2cw6A.117.86 read from T0547.t06.many.frag # found chain 2cw6A in template set T0547 117 :LLAMAYNNE 2cw6A 114 :EAAVAAGAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=86456 # 2fokA.117.200 read from T0547.t06.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)N123 (2fokA)A207 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (2fokA)M208 because P (beta_P) conformation "forbidden" or filtered. T0547 117 :LLAMAY 2fokA 201 :LDTLAN T0547 125 :E 2fokA 209 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=86458 # 1vqoN.117.90 read from T0547.t06.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)N123 (1vqoN)G96 because T (delta_L) conformation "forbidden" or filtered. T0547 117 :LLAMAY 1vqoN 90 :LRAQEA T0547 124 :NE 1vqoN 97 :VE Number of specific fragments extracted= 2 number of extra gaps= 1 total=86460 # 1wcwA.118.103 read from T0547.t06.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)N123 (1wcwA)G109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1wcwA)P112 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAY 1wcwA 104 :ALKEA T0547 124 :NE 1wcwA 110 :LP Number of specific fragments extracted= 2 number of extra gaps= 2 total=86462 # 7odcA.118.96 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 118 :LAMAYNNEG 7odcA 97 :LVQGLGVPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86463 # 1rcqA.118.64 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N123 (1rcqA)G70 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1rcqA)Q73 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAY 1rcqA 65 :ELREA T0547 124 :NE 1rcqA 71 :IR Number of specific fragments extracted= 2 number of extra gaps= 2 total=86465 # 1n2zA.118.14 read from T0547.t06.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)N123 (1n2zA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1n2zA)I42 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAY 1n2zA 36 :LAFAA T0547 125 :EG 1n2zA 43 :TP Number of specific fragments extracted= 2 number of extra gaps= 1 total=86467 # 1f1eA.118.11 read from T0547.t06.many.frag # found chain 1f1eA in training set Warning: unaligning (T0547)E125 (1f1eA)G19 because S (epsilon) conformation "forbidden" or filtered. T0547 118 :LAMAYNN 1f1eA 12 :RIFRQGI T0547 126 :G 1f1eA 20 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=86469 # 1knwA.118.81 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E125 (1knwA)N89 because D (zeta) conformation "forbidden" or filtered. T0547 118 :LAMAYNN 1knwA 82 :RALAAGY T0547 126 :G 1knwA 90 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=86471 # 2d13A.118.22 read from T0547.t06.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)Y122 (2d13A)S27 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (2d13A)L29 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMA 2d13A 23 :WALK T0547 123 :N 2d13A 28 :G T0547 125 :EG 2d13A 30 :RV Number of specific fragments extracted= 3 number of extra gaps= 2 total=86474 # 1pe9A.118.45 read from T0547.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)N124 (1pe9A)A52 because G (3-10) conformation "forbidden" or filtered. T0547 118 :LAMAYN 1pe9A 46 :SALSAG T0547 125 :EG 1pe9A 53 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86476 # 2fupA.118.75 read from T0547.t06.many.frag # found chain 2fupA in training set Warning: unaligning (T0547)N123 (2fupA)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 118 :LAMAY 2fupA 64 :ILREA T0547 124 :NEG 2fupA 70 :VSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86478 # 1vqoN.118.91 read from T0547.t06.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)G126 (1vqoN)E99 because E (beta_S) conformation "forbidden" or filtered. T0547 118 :LAMAYNNE 1vqoN 91 :RAQEAGVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=86479 # 1jihA.118.64 read from T0547.t06.many.frag # found chain 1jihA in template set Warning: unaligning (T0547)N124 (1jihA)I71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1jihA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0547 118 :LAMAYN 1jihA 65 :AARKYG T0547 126 :G 1jihA 73 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=86481 # 1nvmB.118.46 read from T0547.t06.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)G126 (1nvmB)T55 because E (beta_S) conformation "forbidden" or filtered. T0547 118 :LAMAYNNE 1nvmB 47 :RAQRMGVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=86482 # 1ccwB.118.238 read from T0547.t06.many.frag # found chain 1ccwB in training set Warning: unaligning (T0547)Y122 (1ccwB)Q243 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N123 (1ccwB)G244 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1ccwB)N247 because D (zeta) conformation "forbidden" or filtered. T0547 118 :LAMA 1ccwB 239 :LAAE T0547 124 :NE 1ccwB 245 :VK Number of specific fragments extracted= 2 number of extra gaps= 2 total=86484 # 1g8mA.118.40 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)N123 (1g8mA)G46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1g8mA)V49 because E (beta_S) conformation "forbidden" or filtered. T0547 118 :LAMAY 1g8mA 41 :ALRDA T0547 124 :NE 1g8mA 47 :LP Number of specific fragments extracted= 2 number of extra gaps= 2 total=86486 # 2bz1A.118.116 read from T0547.t06.many.frag # found chain 2bz1A in training set Warning: unaligning (T0547)Y122 (2bz1A)L121 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (2bz1A)A124 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMA 2bz1A 117 :ANHQ T0547 123 :NN 2bz1A 122 :GF T0547 126 :G 2bz1A 125 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=86489 # 1omhA.118.39 read from T0547.t06.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)Y122 (1omhA)L44 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1omhA)S47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1omhA)G48 because S (epsilon) conformation "forbidden" or filtered. T0547 118 :LAMA 1omhA 40 :GAEE T0547 123 :NN 1omhA 45 :GL Number of specific fragments extracted= 2 number of extra gaps= 2 total=86491 # 1jr2A.118.126 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)N123 (1jr2A)G111 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 Warning: unaligning (T0547)E125 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)D113 Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)T114 T0547 118 :LAMAY 1jr2A 106 :LVSKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=86492 # 1wbhA.118.82 read from T0547.t06.many.frag # found chain 1wbhA in training set T0547 118 :LAMAYNNEG 1wbhA 82 :EVTEAGAQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=86493 # 1vlpA.118.229 read from T0547.t06.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)G126 (1vlpA)P226 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAYNNE 1vlpA 218 :FAKKYGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=86494 # 1onrA.118.116 read from T0547.t06.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)N123 (1onrA)G123 because T (delta_L) conformation "forbidden" or filtered. T0547 118 :LAMAY 1onrA 118 :LYNDA T0547 124 :NEG 1onrA 124 :ISN Number of specific fragments extracted= 2 number of extra gaps= 1 total=86496 # 1uzbA.118.221 read from T0547.t06.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)N123 (1uzbA)G227 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1uzbA)F228 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMAY 1uzbA 222 :IFHEA T0547 125 :EG 1uzbA 229 :PP Number of specific fragments extracted= 2 number of extra gaps= 1 total=86498 # 1rlzA.118.222 read from T0547.t06.many.frag # found chain 1rlzA in template set Warning: unaligning (T0547)N123 (1rlzA)H228 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1rlzA)V231 because E (beta_S) conformation "forbidden" or filtered. T0547 118 :LAMAY 1rlzA 223 :WAQKN T0547 124 :NE 1rlzA 229 :IP Number of specific fragments extracted= 2 number of extra gaps= 2 total=86500 # 1bgf.118.115 read from T0547.t06.many.frag # found chain 1bgf in training set Warning: unaligning (T0547)N123 (1bgf)N120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 because last residue in template chain is (1bgf)I123 T0547 118 :LAMAY 1bgf 115 :ILAAA T0547 124 :NE 1bgf 121 :MP Number of specific fragments extracted= 2 number of extra gaps= 1 total=86502 # 1n8kA.118.209 read from T0547.t06.many.frag # found chain 1n8kA in training set T0547 118 :LAMAYNNEG 1n8kA 210 :GCKAAGAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=86503 # 1ofuX.118.48 read from T0547.t06.many.frag # found chain 1ofuX in template set Warning: unaligning (T0547)N123 (1ofuX)G96 because T (delta_L) conformation "forbidden" or filtered. T0547 118 :LAMAY 1ofuX 91 :WLRRA T0547 124 :NEG 1ofuX 97 :LNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=86505 # 1dd9A.118.176 read from T0547.t06.many.frag # found chain 1dd9A in training set T0547 118 :LAMAYNNEG 1dd9A 272 :ALAQYGINY Number of specific fragments extracted= 1 number of extra gaps= 0 total=86506 12asA expands to /projects/compbio/data/pdb/12as.pdb.gz 12asA:# 12asA.118.79 read from T0547.t06.many.frag # adding 12asA to template set # found chain 12asA in template set Warning: unaligning (T0547)Y122 because of BadResidue code BAD_PEPTIDE in next template residue (12asA)D85 Warning: unaligning (T0547)N123 because of BadResidue code BAD_PEPTIDE at template residue (12asA)D85 Warning: unaligning (T0547)N124 (12asA)F86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (12asA)S87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (12asA)A88 because P (beta_P) conformation "forbidden" or filtered. T0547 118 :LAMA 12asA 80 :TLGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=86507 # 1v72A.118.73 read from T0547.t06.many.frag # found chain 1v72A in template set T0547 118 :LAMAYNNEG 1v72A 74 :LCLSAMTPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=86508 # 1zjcA.118.48 read from T0547.t06.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)N123 (1zjcA)G51 because T (delta_L) conformation "forbidden" or filtered. T0547 118 :LAMAY 1zjcA 46 :EAYHC T0547 124 :NEG 1zjcA 52 :ASD Number of specific fragments extracted= 2 number of extra gaps= 1 total=86510 # 1ct5A.118.75 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)N124 (1ct5A)P83 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 T0547 118 :LAMAYN 1ct5A 77 :EKAKLL T0547 125 :E 1ct5A 84 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=86512 # 7odcA.119.97 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E125 (7odcA)P104 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAYNN 7odcA 98 :VQGLGV T0547 126 :GA 7odcA 105 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=86514 # 1f1eA.119.12 read from T0547.t06.many.frag # found chain 1f1eA in training set Warning: unaligning (T0547)E125 (1f1eA)G19 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1f1eA)E20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1f1eA)R21 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAYNN 1f1eA 13 :IFRQGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=86515 # 1n2zA.119.15 read from T0547.t06.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)N123 (1n2zA)G41 because T (delta_L) conformation "forbidden" or filtered. T0547 119 :AMAY 1n2zA 37 :AFAA T0547 124 :NEGA 1n2zA 42 :ITPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86517 # 1rcqA.119.65 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G126 (1rcqA)Q73 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAYNNE 1rcqA 66 :LREAGIR T0547 127 :A 1rcqA 74 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=86519 # 1wcwA.119.104 read from T0547.t06.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)Y122 (1wcwA)A108 because G (3-10) conformation "forbidden" or filtered. T0547 119 :AMA 1wcwA 105 :LKE T0547 123 :NNEGA 1wcwA 109 :GLPPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=86521 # 1vqoN.119.92 read from T0547.t06.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)N123 (1vqoN)G96 because T (delta_L) conformation "forbidden" or filtered. T0547 119 :AMAY 1vqoN 92 :AQEA T0547 124 :NEGA 1vqoN 97 :VEEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86523 # 1onrA.119.117 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 119 :AMAYNNEGA 1onrA 119 :YNDAGISND Number of specific fragments extracted= 1 number of extra gaps= 0 total=86524 # 2bz1A.119.117 read from T0547.t06.many.frag # found chain 2bz1A in training set Warning: unaligning (T0547)N123 (2bz1A)G122 because T (delta_L) conformation "forbidden" or filtered. T0547 119 :AMAY 2bz1A 118 :NHQL T0547 124 :NEGA 2bz1A 123 :FAAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=86526 # 1zjcA.119.49 read from T0547.t06.many.frag # found chain 1zjcA in training set T0547 119 :AMAYNNEGA 1zjcA 47 :AYHCGASDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86527 # 1jihA.119.65 read from T0547.t06.many.frag # found chain 1jihA in template set Warning: unaligning (T0547)E125 (1jihA)S72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1jihA)M74 because G (3-10) conformation "forbidden" or filtered. T0547 119 :AMAYNN 1jihA 66 :ARKYGI T0547 126 :G 1jihA 73 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=86529 # 2d13A.119.23 read from T0547.t06.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)G126 (2d13A)V31 because N (gamma') conformation "forbidden" or filtered. T0547 119 :AMAYNNE 2d13A 24 :ALKSGLR T0547 127 :A 2d13A 32 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=86531 # 1jr2A.119.127 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)Y122 (1jr2A)I110 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 Warning: unaligning (T0547)E125 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)D113 Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)T114 T0547 119 :AMA 1jr2A 107 :VSK T0547 123 :N 1jr2A 111 :G T0547 127 :A 1jr2A 115 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=86534 # 1uzbA.119.222 read from T0547.t06.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)N123 (1uzbA)G227 because T (delta_L) conformation "forbidden" or filtered. T0547 119 :AMAY 1uzbA 223 :FHEA T0547 124 :NEGA 1uzbA 228 :FPPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=86536 # 1pe9A.119.46 read from T0547.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)N124 (1pe9A)A52 because G (3-10) conformation "forbidden" or filtered. T0547 119 :AMAYN 1pe9A 47 :ALSAG T0547 125 :EGA 1pe9A 53 :EAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=86538 # 1g8mA.119.41 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)N124 (1g8mA)L47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1g8mA)P48 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAYN 1g8mA 42 :LRDAG T0547 126 :GA 1g8mA 49 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=86540 # 1ct5A.119.76 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 119 :AMAYNNE 1ct5A 78 :KAKLLPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=86541 # 1zc6A.119.115 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)N124 (1zc6A)G121 because T (delta_L) conformation "forbidden" or filtered. T0547 119 :AMAYN 1zc6A 116 :LGAHG T0547 125 :EGA 1zc6A 122 :QPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=86543 # 1v72A.119.74 read from T0547.t06.many.frag # found chain 1v72A in template set Warning: unaligning (T0547)N124 (1v72A)T80 because E (beta_S) conformation "forbidden" or filtered. T0547 119 :AMAYN 1v72A 75 :CLSAM T0547 125 :EGA 1v72A 81 :PPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=86545 # 1omhA.119.40 read from T0547.t06.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)N123 (1omhA)G45 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1omhA)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 119 :AMAY 1omhA 41 :AEEL T0547 124 :N 1omhA 46 :L T0547 126 :GA 1omhA 48 :GE Number of specific fragments extracted= 3 number of extra gaps= 2 total=86548 # 2fupA.119.76 read from T0547.t06.many.frag # found chain 2fupA in training set Warning: unaligning (T0547)N123 (2fupA)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (2fupA)S71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (2fupA)L72 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (2fupA)D73 because Y (epsilon') conformation "forbidden" or filtered. T0547 119 :AMAY 2fupA 65 :LREA T0547 124 :N 2fupA 70 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=86550 # 1knwA.119.82 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N123 (1knwA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 119 :AMAY 1knwA 83 :ALAA T0547 124 :NEGA 1knwA 88 :YNPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=86552 # 1vlpA.119.230 read from T0547.t06.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)G126 (1vlpA)P226 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAYNNE 1vlpA 219 :AKKYGVK T0547 127 :A 1vlpA 227 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=86554 # 1jl1A.119.54 read from T0547.t06.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)G126 (1jl1A)H62 because P (beta_P) conformation "forbidden" or filtered. T0547 119 :AMAYNNE 1jl1A 55 :ALEALKE T0547 127 :A 1jl1A 63 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=86556 # 1vb3A.119.142 read from T0547.t06.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)N123 (1vb3A)G147 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1vb3A)N150 because G (3-10) conformation "forbidden" or filtered. T0547 119 :AMAY 1vb3A 143 :HAFY T0547 124 :NE 1vb3A 148 :LP T0547 127 :A 1vb3A 151 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=86559 # 12asA.119.80 read from T0547.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0547)Y122 because of BadResidue code BAD_PEPTIDE in next template residue (12asA)D85 Warning: unaligning (T0547)N123 because of BadResidue code BAD_PEPTIDE at template residue (12asA)D85 Warning: unaligning (T0547)A127 (12asA)G89 because T (delta_L) conformation "forbidden" or filtered. T0547 119 :AMA 12asA 81 :LGQ T0547 124 :NEG 12asA 86 :FSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=86561 # 1ccwB.119.239 read from T0547.t06.many.frag # found chain 1ccwB in training set Warning: unaligning (T0547)N123 (1ccwB)G244 because T (delta_L) conformation "forbidden" or filtered. T0547 119 :AMAY 1ccwB 240 :AAEQ T0547 124 :NEGA 1ccwB 245 :VKNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=86563 # 1dp4A.119.140 read from T0547.t06.many.frag # found chain 1dp4A in template set Warning: unaligning (T0547)A127 (1dp4A)Q149 because E (beta_S) conformation "forbidden" or filtered. T0547 119 :AMAYNNEG 1dp4A 141 :HRRLGWEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=86564 # 1dpgA.119.102 read from T0547.t06.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)N124 (1dpgA)I108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1dpgA)D109 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1dpgA)G110 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1dpgA)N111 because L (left) conformation "forbidden" or filtered. T0547 119 :AMAYN 1dpgA 103 :ADKFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=86565 # 1jfbA.119.154 read from T0547.t06.many.frag # found chain 1jfbA in training set Warning: unaligning (T0547)N123 (1jfbA)G158 because T (delta_L) conformation "forbidden" or filtered. T0547 119 :AMAY 1jfbA 154 :YTLL T0547 124 :NEGA 1jfbA 159 :VPFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=86567 # 1q0rA.119.87 read from T0547.t06.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)N123 (1q0rA)G92 because L (left) conformation "forbidden" or filtered. T0547 119 :AMAY 1q0rA 88 :LDGW T0547 124 :NEGA 1q0rA 93 :VDRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86569 # 7odcA.120.98 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y122 (7odcA)L101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (7odcA)V103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 120 :MA 7odcA 99 :QG T0547 123 :N 7odcA 102 :G T0547 125 :EGA 7odcA 104 :PAE Number of specific fragments extracted= 3 number of extra gaps= 3 total=86572 # 1f1eA.120.13 read from T0547.t06.many.frag # found chain 1f1eA in training set Warning: unaligning (T0547)N123 (1f1eA)G17 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1f1eA)E20 because G (3-10) conformation "forbidden" or filtered. T0547 120 :MAY 1f1eA 14 :FRQ T0547 124 :NE 1f1eA 18 :IG T0547 127 :AP 1f1eA 21 :RR Number of specific fragments extracted= 3 number of extra gaps= 2 total=86575 # 1vqoN.120.93 read from T0547.t06.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)Y122 (1vqoN)A95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1vqoN)V97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vqoN)V101 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MA 1vqoN 93 :QE T0547 123 :N 1vqoN 96 :G T0547 125 :EGA 1vqoN 98 :EEA Number of specific fragments extracted= 3 number of extra gaps= 3 total=86578 # 1onrA.120.118 read from T0547.t06.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)P128 (1onrA)R128 because G (3-10) conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 1onrA 120 :NDAGISND Number of specific fragments extracted= 1 number of extra gaps= 1 total=86579 # 1rcqA.120.66 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N123 (1rcqA)G70 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1rcqA)Q73 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1rcqA)I75 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 1rcqA 67 :REA T0547 124 :NE 1rcqA 71 :IR T0547 127 :A 1rcqA 74 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=86582 # 1zjcA.120.50 read from T0547.t06.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)N123 (1zjcA)G51 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zjcA)R56 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 1zjcA 48 :YHC T0547 124 :NEGA 1zjcA 52 :ASDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=86584 # 1n2zA.120.16 read from T0547.t06.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)N123 (1n2zA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1n2zA)T43 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1n2zA)G46 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 1n2zA 38 :FAA T0547 124 :N 1n2zA 42 :I T0547 126 :GA 1n2zA 44 :PV Number of specific fragments extracted= 3 number of extra gaps= 3 total=86587 # 1wcwA.120.105 read from T0547.t06.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)E125 (1wcwA)P111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1wcwA)P112 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wcwA)A114 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNN 1wcwA 106 :KEAGL T0547 127 :A 1wcwA 113 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=86589 # 1uzbA.120.223 read from T0547.t06.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)N123 (1uzbA)G227 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1uzbA)F228 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1uzbA)P230 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1uzbA)G231 because T (delta_L) conformation "forbidden" or filtered. T0547 120 :MAY 1uzbA 224 :HEA T0547 125 :E 1uzbA 229 :P T0547 128 :P 1uzbA 232 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=86592 # 1zc6A.120.116 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)A127 (1zc6A)G124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zc6A)I125 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNEG 1zc6A 117 :GAHGGQP Number of specific fragments extracted= 1 number of extra gaps= 1 total=86593 # 2bz1A.120.118 read from T0547.t06.many.frag # found chain 2bz1A in training set Warning: unaligning (T0547)Y122 (2bz1A)L121 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2bz1A)E127 because G (3-10) conformation "forbidden" or filtered. T0547 120 :MA 2bz1A 119 :HQ T0547 123 :NNEGA 2bz1A 122 :GFAAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=86595 # 1ct5A.120.77 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 120 :MAYNNE 1ct5A 79 :AKLLPD T0547 128 :P 1ct5A 87 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=86597 # 1dpgA.120.103 read from T0547.t06.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)A127 (1dpgA)N111 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1dpgA)R112 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNEG 1dpgA 104 :DKFDIDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=86598 # 1pe9A.120.47 read from T0547.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)E125 (1pe9A)E53 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1pe9A)A54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1pe9A)I56 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNN 1pe9A 48 :LSAGA T0547 127 :A 1pe9A 55 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=86600 # 2az4A.120.246 read from T0547.t06.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)G126 (2az4A)N253 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. T0547 120 :MAYNNE 2az4A 247 :LELENP T0547 128 :P 2az4A 255 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=86602 # 1jihA.120.66 read from T0547.t06.many.frag # found chain 1jihA in template set Warning: unaligning (T0547)E125 (1jihA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0547 120 :MAYNN 1jihA 67 :RKYGI T0547 126 :GAP 1jihA 73 :RMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=86604 # 1dp4A.120.141 read from T0547.t06.many.frag # found chain 1dp4A in template set Warning: unaligning (T0547)P128 (1dp4A)A150 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 1dp4A 142 :RRLGWEHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=86605 # 1r9jA.120.172 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)Y122 (1r9jA)L173 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1r9jA)I179 because D (zeta) conformation "forbidden" or filtered. T0547 120 :MA 1r9jA 171 :GH T0547 123 :NNEGA 1r9jA 174 :ALEKL Number of specific fragments extracted= 2 number of extra gaps= 2 total=86607 # 1q0rA.120.88 read from T0547.t06.many.frag # found chain 1q0rA in training set T0547 120 :MAYNNEGAP 1q0rA 89 :DGWGVDRAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=86608 # 1ej0A.120.40 read from T0547.t06.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)N124 (1ej0A)G74 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1ej0A)K76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1ej0A)G77 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 120 :MAYN 1ej0A 70 :VTQI T0547 125 :E 1ej0A 75 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=86610 # 1pswA.120.23 read from T0547.t06.many.frag # found chain 1pswA in template set Warning: unaligning (T0547)P128 (1pswA)I32 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 1pswA 24 :LQARYPQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86611 # 1jr2A.120.128 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)N123 (1jr2A)G111 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jr2A)D113 Warning: unaligning (T0547)E125 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)D113 Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jr2A)T114 Warning: unaligning (T0547)A127 (1jr2A)E115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1jr2A)G116 because S (epsilon) conformation "forbidden" or filtered. T0547 120 :MAY 1jr2A 108 :SKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=86612 # 2d13A.120.24 read from T0547.t06.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)G126 (2d13A)V31 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2d13A)Y33 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNE 2d13A 25 :LKSGLR T0547 127 :A 2d13A 32 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=86614 # 1vb3A.120.143 read from T0547.t06.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)P128 (1vb3A)K152 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 1vb3A 144 :AFYGLPNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=86615 # 2bzgA.120.42 read from T0547.t06.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)N123 (2bzgA)G59 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (2bzgA)L63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2bzgA)R64 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 2bzgA 56 :FLK T0547 124 :NEG 2bzgA 60 :KSG Number of specific fragments extracted= 2 number of extra gaps= 2 total=86617 # 2apjA.120.103 read from T0547.t06.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)N123 (2apjA)E107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (2apjA)T108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2apjA)V112 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAY 2apjA 104 :NRL T0547 125 :EGA 2apjA 109 :DSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=86619 # 1uwcA.120.145 read from T0547.t06.many.frag # found chain 1uwcA in training set Warning: unaligning (T0547)P128 (1uwcA)R154 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 1uwcA 146 :LSATYDNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=86620 # 1u9yA.120.149 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)N124 (1u9yA)L154 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1u9yA)I158 because E (beta_S) conformation "forbidden" or filtered. T0547 120 :MAYN 1u9yA 150 :VKDK T0547 125 :EGA 1u9yA 155 :NDP Number of specific fragments extracted= 2 number of extra gaps= 2 total=86622 # 1ofuX.120.50 read from T0547.t06.many.frag # found chain 1ofuX in template set Warning: unaligning (T0547)P128 (1ofuX)R101 because G (3-10) conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 1ofuX 93 :RRAGLNRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=86623 # 1vlpA.120.231 read from T0547.t06.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)P128 (1vlpA)G228 because Y (epsilon') conformation "forbidden" or filtered. T0547 120 :MAYNNEGA 1vlpA 220 :KKYGVKPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=86624 # 7odcA.121.99 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N123 (7odcA)G102 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (7odcA)V103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 121 :AY 7odcA 100 :GL T0547 125 :EGA 7odcA 104 :PAE T0547 129 :I 7odcA 108 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=86627 # 1f1eA.121.14 read from T0547.t06.many.frag # found chain 1f1eA in training set Warning: unaligning (T0547)E125 (1f1eA)G19 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1f1eA)E20 because G (3-10) conformation "forbidden" or filtered. T0547 121 :AYNN 1f1eA 15 :RQGI T0547 127 :API 1f1eA 21 :RRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86629 # 1onrA.121.119 read from T0547.t06.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)N123 (1onrA)G123 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1onrA)R128 because G (3-10) conformation "forbidden" or filtered. T0547 121 :AY 1onrA 121 :DA T0547 124 :NEGA 1onrA 124 :ISND T0547 129 :I 1onrA 129 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=86632 # 1vqoN.121.94 read from T0547.t06.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)N123 (1vqoN)G96 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vqoN)V101 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1vqoN 94 :EA T0547 124 :NEGA 1vqoN 97 :VEEA T0547 129 :I 1vqoN 102 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=86635 # 1zjcA.121.51 read from T0547.t06.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)N123 (1zjcA)G51 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zjcA)R56 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1zjcA 49 :HC T0547 124 :NEGA 1zjcA 52 :ASDV T0547 129 :I 1zjcA 57 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=86638 # 1q0rA.121.89 read from T0547.t06.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)N123 (1q0rA)G92 because L (left) conformation "forbidden" or filtered. T0547 121 :AY 1q0rA 90 :GW T0547 124 :NEGAPI 1q0rA 93 :VDRAHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86640 # 1wzuA.121.44 read from T0547.t06.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1wzuA 45 :ATRVDAD T0547 129 :I 1wzuA 53 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=86642 # 1vb3A.121.144 read from T0547.t06.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)P128 (1vb3A)K152 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1vb3A 145 :FYGLPNV T0547 129 :I 1vb3A 153 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=86644 # 1rcqA.121.67 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)P128 (1rcqA)I75 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1rcqA 68 :EAGIRQP T0547 129 :I 1rcqA 76 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=86646 # 1uzbA.121.224 read from T0547.t06.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)N123 (1uzbA)G227 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1uzbA)P230 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1uzbA)G231 because T (delta_L) conformation "forbidden" or filtered. T0547 121 :AY 1uzbA 225 :EA T0547 124 :NE 1uzbA 228 :FP T0547 128 :PI 1uzbA 232 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=86649 # 1dpgA.121.104 read from T0547.t06.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)P128 (1dpgA)R112 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1dpgA 105 :KFDIDGN T0547 129 :I 1dpgA 113 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=86651 # 1uwcA.121.146 read from T0547.t06.many.frag # found chain 1uwcA in training set Warning: unaligning (T0547)N123 (1uwcA)T149 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1uwcA)R154 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1uwcA 147 :SA T0547 124 :NEGA 1uwcA 150 :YDNV T0547 129 :I 1uwcA 155 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=86654 # 2apjA.121.104 read from T0547.t06.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)A127 (2apjA)A111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2apjA)V112 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEG 2apjA 105 :RLETDS T0547 129 :I 2apjA 113 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=86656 # 2az4A.121.247 read from T0547.t06.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. T0547 121 :AYNNEG 2az4A 248 :ELENPN T0547 128 :PI 2az4A 255 :QI Number of specific fragments extracted= 2 number of extra gaps= 1 total=86658 # 1u9yA.121.150 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)P128 (1u9yA)I158 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1u9yA 151 :KDKLNDP T0547 129 :I 1u9yA 159 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=86660 # 2bzgA.121.43 read from T0547.t06.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)N123 (2bzgA)G59 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (2bzgA)S61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2bzgA)R64 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 2bzgA 57 :LK T0547 124 :N 2bzgA 60 :K T0547 126 :GA 2bzgA 62 :GL T0547 129 :I 2bzgA 65 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=86664 # 1zc6A.121.117 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)Y122 (1zc6A)H119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1zc6A)G124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zc6A)I125 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :A 1zc6A 118 :A T0547 123 :NNEG 1zc6A 120 :GGQP T0547 129 :I 1zc6A 126 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=86667 # 1c7nA.121.107 read from T0547.t06.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)N123 (1c7nA)T110 because Y (epsilon') conformation "forbidden" or filtered. T0547 121 :AY 1c7nA 108 :EF T0547 124 :NEGAPI 1c7nA 111 :KPGDGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86669 # 1r9jA.121.173 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)G126 (1r9jA)K177 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1r9jA)L178 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1r9jA)I179 because D (zeta) conformation "forbidden" or filtered. T0547 121 :AYNNE 1r9jA 172 :HLALE T0547 129 :I 1r9jA 180 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=86671 # 1pswA.121.24 read from T0547.t06.many.frag # found chain 1pswA in template set Warning: unaligning (T0547)P128 (1pswA)I32 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1pswA 25 :QARYPQA T0547 129 :I 1pswA 33 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=86673 # 1pe9A.121.48 read from T0547.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)N123 (1pe9A)G51 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1pe9A)A54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1pe9A)I56 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1pe9A 49 :SA T0547 124 :NE 1pe9A 52 :AE T0547 127 :A 1pe9A 55 :K T0547 129 :I 1pe9A 57 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=86677 # 1dp4A.121.142 read from T0547.t06.many.frag # found chain 1dp4A in template set Warning: unaligning (T0547)N123 (1dp4A)G145 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1dp4A)A150 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1dp4A 143 :RL T0547 124 :NEGA 1dp4A 146 :WEHQ T0547 129 :I 1dp4A 151 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=86680 # 1n2zA.121.17 read from T0547.t06.many.frag # found chain 1n2zA in template set Warning: unaligning (T0547)P128 (1n2zA)G46 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 1n2zA 39 :AAGITPV T0547 129 :I 1n2zA 47 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=86682 # 1ct5A.121.78 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)N124 (1ct5A)P83 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 121 :AYN 1ct5A 80 :KLL T0547 125 :E 1ct5A 84 :D T0547 128 :PI 1ct5A 87 :KW Number of specific fragments extracted= 3 number of extra gaps= 2 total=86685 # 2d13A.121.25 read from T0547.t06.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)P128 (2d13A)Y33 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNNEGA 2d13A 26 :KSGLRVR T0547 129 :I 2d13A 34 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=86687 # 1wcwA.121.106 read from T0547.t06.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)N123 (1wcwA)G109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wcwA)A114 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1wcwA 107 :EA T0547 124 :NEGA 1wcwA 110 :LPPH T0547 129 :I 1wcwA 115 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=86690 # 1ej0A.121.41 read from T0547.t06.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)N124 (1ej0A)G74 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 121 :AYN 1ej0A 71 :TQI T0547 125 :EGA 1ej0A 75 :GKG T0547 129 :I 1ej0A 79 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=86693 # 1pg4A.121.125 read from T0547.t06.many.frag # found chain 1pg4A in training set Warning: unaligning (T0547)A127 (1pg4A)G132 because T (delta_L) conformation "forbidden" or filtered. T0547 121 :AYNNEG 1pg4A 126 :DLGIKK T0547 128 :PI 1pg4A 133 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86695 # 2d1pC.121.18 read from T0547.t06.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)E125 (2d1pC)E23 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2d1pC)E26 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AYNN 2d1pC 19 :RLLS T0547 126 :GA 2d1pC 24 :GD T0547 129 :I 2d1pC 27 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=86698 # 1kaeA.121.150 read from T0547.t06.many.frag # found chain 1kaeA in training set Warning: unaligning (T0547)N123 (1kaeA)G153 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1kaeA)K156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1kaeA)V157 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1kaeA)V158 because E (beta_S) conformation "forbidden" or filtered. T0547 121 :AY 1kaeA 151 :IA T0547 124 :NE 1kaeA 154 :CK T0547 129 :I 1kaeA 159 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=86701 # 7odcA.122.100 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N123 (7odcA)G102 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (7odcA)V103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 122 :Y 7odcA 101 :L T0547 125 :EGA 7odcA 104 :PAE T0547 129 :IT 7odcA 108 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=86704 # 1f1eA.122.15 read from T0547.t06.many.frag # found chain 1f1eA in training set Warning: unaligning (T0547)G126 (1f1eA)E20 because G (3-10) conformation "forbidden" or filtered. T0547 122 :YNNE 1f1eA 16 :QGIG T0547 127 :APIT 1f1eA 21 :RRLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=86706 # 1q0rA.122.90 read from T0547.t06.many.frag # found chain 1q0rA in training set T0547 122 :YNNEGAPIT 1q0rA 91 :WGVDRAHVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86707 # 1wzuA.122.45 read from T0547.t06.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)N123 (1wzuA)R47 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1wzuA)A50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 1wzuA 46 :T T0547 124 :NE 1wzuA 48 :VD T0547 127 :A 1wzuA 51 :D T0547 129 :IT 1wzuA 53 :IV Number of specific fragments extracted= 4 number of extra gaps= 3 total=86711 # 1vb3A.122.145 read from T0547.t06.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)N123 (1vb3A)G147 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vb3A)K152 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 1vb3A 146 :Y T0547 124 :NEGA 1vb3A 148 :LPNV T0547 129 :IT 1vb3A 153 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=86714 # 2apjA.122.105 read from T0547.t06.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)N123 (2apjA)E107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2apjA)V112 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 2apjA 106 :L T0547 124 :NEGA 2apjA 108 :TDSA T0547 129 :IT 2apjA 113 :IG Number of specific fragments extracted= 3 number of extra gaps= 2 total=86717 # 1onrA.122.120 read from T0547.t06.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)N123 (1onrA)G123 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1onrA)R128 because G (3-10) conformation "forbidden" or filtered. T0547 122 :Y 1onrA 122 :A T0547 124 :NEGA 1onrA 124 :ISND T0547 129 :IT 1onrA 129 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=86720 # 1c7nA.122.108 read from T0547.t06.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)N123 (1c7nA)T110 because Y (epsilon') conformation "forbidden" or filtered. T0547 122 :Y 1c7nA 109 :F T0547 124 :NEGAPIT 1c7nA 111 :KPGDGVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=86722 # 1uwcA.122.147 read from T0547.t06.many.frag # found chain 1uwcA in training set Warning: unaligning (T0547)E125 (1uwcA)D151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1uwcA)R154 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNN 1uwcA 148 :ATY T0547 126 :GA 1uwcA 152 :NV T0547 129 :IT 1uwcA 155 :LY Number of specific fragments extracted= 3 number of extra gaps= 2 total=86725 # 1zjcA.122.52 read from T0547.t06.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)P128 (1zjcA)R56 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNEGA 1zjcA 50 :CGASDV T0547 129 :IT 1zjcA 57 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86727 # 2bzgA.122.44 read from T0547.t06.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)N123 (2bzgA)G59 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (2bzgA)K60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2bzgA)R64 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 2bzgA 58 :K T0547 125 :EGA 2bzgA 61 :SGL T0547 129 :IT 2bzgA 65 :VF Number of specific fragments extracted= 3 number of extra gaps= 2 total=86730 # 2az4A.122.248 read from T0547.t06.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)G126 (2az4A)N253 because D (zeta) conformation "forbidden" or filtered. T0547 122 :YNNE 2az4A 249 :LENP T0547 127 :APIT 2az4A 254 :RQIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=86732 # 1u9yA.122.151 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)P128 (1u9yA)I158 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNEGA 1u9yA 152 :DKLNDP T0547 129 :IT 1u9yA 159 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86734 # 1vqoN.122.95 read from T0547.t06.many.frag # found chain 1vqoN in template set Warning: unaligning (T0547)N123 (1vqoN)G96 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vqoN)V101 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :Y 1vqoN 95 :A T0547 124 :NEGA 1vqoN 97 :VEEA T0547 129 :IT 1vqoN 102 :LD Number of specific fragments extracted= 3 number of extra gaps= 2 total=86737 # 1r9jA.122.174 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)N123 (1r9jA)A174 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1r9jA)K177 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1r9jA)I179 because D (zeta) conformation "forbidden" or filtered. T0547 122 :Y 1r9jA 173 :L T0547 124 :NE 1r9jA 175 :LE T0547 127 :A 1r9jA 178 :L T0547 129 :IT 1r9jA 180 :VI Number of specific fragments extracted= 4 number of extra gaps= 3 total=86741 # 1dpgA.122.105 read from T0547.t06.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)A127 (1dpgA)N111 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1dpgA)R112 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNEG 1dpgA 106 :FDIDG T0547 129 :IT 1dpgA 113 :IF Number of specific fragments extracted= 2 number of extra gaps= 1 total=86743 # 1zc6A.122.118 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)Y122 (1zc6A)H119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1zc6A)G121 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1zc6A)G124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1zc6A)I125 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :N 1zc6A 120 :G T0547 125 :EG 1zc6A 122 :QP T0547 129 :IT 1zc6A 126 :IV Number of specific fragments extracted= 3 number of extra gaps= 3 total=86746 # 1mpxA.122.45 read from T0547.t06.many.frag # found chain 1mpxA in template set Warning: unaligning (T0547)N123 (1mpxA)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 122 :Y 1mpxA 68 :K T0547 124 :NEGAPIT 1mpxA 70 :AKNAPIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86748 # 1cs1A.122.86 read from T0547.t06.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNEGA 1cs1A 87 :FLKPGD T0547 129 :IT 1cs1A 94 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86750 # 1ej0A.122.42 read from T0547.t06.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)N124 (1ej0A)G74 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 122 :YN 1ej0A 72 :QI T0547 125 :EGA 1ej0A 75 :GKG T0547 129 :IT 1ej0A 79 :II Number of specific fragments extracted= 3 number of extra gaps= 2 total=86753 # 1ct5A.122.79 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 122 :YNNE 1ct5A 81 :LLPD T0547 128 :PIT 1ct5A 87 :KWH Number of specific fragments extracted= 2 number of extra gaps= 1 total=86755 # 1pe9A.122.49 read from T0547.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0547)E125 (1pe9A)E53 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1pe9A)A54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1pe9A)I56 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNN 1pe9A 50 :AGA T0547 127 :A 1pe9A 55 :K T0547 129 :IT 1pe9A 57 :IQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=86758 # 1vq2A.122.117 read from T0547.t06.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)N124 (1vq2A)I120 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vq2A)T124 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YN 1vq2A 118 :SS T0547 125 :EGA 1vq2A 121 :EGA T0547 129 :IT 1vq2A 125 :MY Number of specific fragments extracted= 3 number of extra gaps= 2 total=86761 # 1o66A.122.73 read from T0547.t06.many.frag # found chain 1o66A in training set T0547 122 :YNNEGAPIT 1o66A 72 :RGAKNAMIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86762 # 2b0cA.122.160 read from T0547.t06.many.frag # found chain 2b0cA in template set Warning: unaligning (T0547)P128 (2b0cA)D167 because G (3-10) conformation "forbidden" or filtered. T0547 122 :YNNEGA 2b0cA 161 :EGFSPS T0547 129 :IT 2b0cA 168 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86764 # 1dp4A.122.143 read from T0547.t06.many.frag # found chain 1dp4A in template set Warning: unaligning (T0547)P128 (1dp4A)A150 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNEGA 1dp4A 144 :LGWEHQ T0547 129 :IT 1dp4A 151 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86766 # 2d1pC.122.19 read from T0547.t06.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)P128 (2d1pC)E26 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNEGA 2d1pC 20 :LLSEGD T0547 129 :IT 2d1pC 27 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86768 # 1pswA.122.25 read from T0547.t06.many.frag # found chain 1pswA in template set Warning: unaligning (T0547)P128 (1pswA)I32 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNEGA 1pswA 26 :ARYPQA T0547 129 :IT 1pswA 33 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=86770 # 1qsgA.122.4 read from T0547.t06.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)Y122 because first residue in template chain is (1qsgA)G2 Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. T0547 123 :NNEGA 1qsgA 3 :FLSGK T0547 129 :IT 1qsgA 9 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86772 # 2d13A.122.26 read from T0547.t06.many.frag # found chain 2d13A in template set Warning: unaligning (T0547)P128 (2d13A)Y33 because E (beta_S) conformation "forbidden" or filtered. T0547 122 :YNNEGA 2d13A 27 :SGLRVR T0547 129 :IT 2d13A 34 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86774 # 1c7nA.123.109 read from T0547.t06.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)N123 (1c7nA)T110 because Y (epsilon') conformation "forbidden" or filtered. T0547 124 :NEGAPITV 1c7nA 111 :KPGDGVII Number of specific fragments extracted= 1 number of extra gaps= 1 total=86775 # 2apjA.123.106 read from T0547.t06.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)N123 (2apjA)E107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2apjA)V112 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 2apjA 108 :TDSA T0547 129 :ITV 2apjA 113 :IGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=86777 # 1wzuA.123.46 read from T0547.t06.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)N123 (1wzuA)R47 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 1wzuA 48 :VDAD T0547 129 :ITV 1wzuA 53 :IVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=86779 # 1cs1A.123.87 read from T0547.t06.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 1cs1A 88 :LKPGD T0547 129 :ITV 1cs1A 94 :LVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86781 # 1vq2A.123.118 read from T0547.t06.many.frag # found chain 1vq2A in template set Warning: unaligning (T0547)E125 (1vq2A)E121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vq2A)T124 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NN 1vq2A 119 :SI T0547 126 :GA 1vq2A 122 :GA T0547 129 :ITV 1vq2A 125 :MYV Number of specific fragments extracted= 3 number of extra gaps= 2 total=86784 # 1ne2A.123.48 read from T0547.t06.many.frag # found chain 1ne2A in training set Warning: unaligning (T0547)E125 (1ne2A)G48 because P (beta_P) conformation "forbidden" or filtered. T0547 123 :NN 1ne2A 46 :NI T0547 126 :GAPITV 1ne2A 49 :GRSVID Number of specific fragments extracted= 2 number of extra gaps= 1 total=86786 # 1id1A.123.0 read from T0547.t06.many.frag # found chain 1id1A in template set Warning: unaligning (T0547)N123 because first residue in template chain is (1id1A)H3 Warning: unaligning (T0547)A127 (1id1A)H7 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1id1A)F8 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEG 1id1A 4 :RKD T0547 129 :ITV 1id1A 9 :IVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=86788 # 1qsgA.123.5 read from T0547.t06.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)A127 (1qsgA)K7 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. T0547 123 :NNEG 1qsgA 3 :FLSG T0547 129 :ITV 1qsgA 9 :ILV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86790 # 2az4A.123.249 read from T0547.t06.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. T0547 123 :NNEG 2az4A 250 :ENPN T0547 128 :PITV 2az4A 255 :QITF Number of specific fragments extracted= 2 number of extra gaps= 1 total=86792 # 1v8bA.123.42 read from T0547.t06.many.frag # found chain 1v8bA in template set Warning: unaligning (T0547)E125 (1v8bA)K45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1v8bA)K48 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NN 1v8bA 43 :PL T0547 126 :GA 1v8bA 46 :NA T0547 129 :ITV 1v8bA 49 :ITG Number of specific fragments extracted= 3 number of extra gaps= 2 total=86795 # 1u9yA.123.152 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)P128 (1u9yA)I158 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 1u9yA 153 :KLNDP T0547 129 :ITV 1u9yA 159 :VLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86797 # 2fhpA.123.41 read from T0547.t06.many.frag # found chain 2fhpA in training set Warning: unaligning (T0547)P128 (2fhpA)M44 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 2fhpA 39 :YFDGG T0547 129 :ITV 2fhpA 45 :ALD Number of specific fragments extracted= 2 number of extra gaps= 1 total=86799 # 1ej0A.123.43 read from T0547.t06.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)N124 (1ej0A)G74 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 123 :N 1ej0A 73 :I T0547 125 :EGA 1ej0A 75 :GKG T0547 129 :ITV 1ej0A 79 :IIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=86802 # 7odcA.123.101 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E125 (7odcA)P104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 123 :NN 7odcA 102 :GV T0547 126 :GA 7odcA 105 :AE T0547 129 :ITV 7odcA 108 :VIY Number of specific fragments extracted= 3 number of extra gaps= 2 total=86805 # 2bzgA.123.45 read from T0547.t06.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)N124 (2bzgA)K60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2bzgA)R64 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :N 2bzgA 59 :G T0547 125 :EGA 2bzgA 61 :SGL T0547 129 :ITV 2bzgA 65 :VFF Number of specific fragments extracted= 3 number of extra gaps= 2 total=86808 # 1nytA.123.115 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)N123 (1nytA)I116 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1nytA)R117 because Y (epsilon') conformation "forbidden" or filtered. T0547 125 :EGAPITV 1nytA 118 :PGLRILL Number of specific fragments extracted= 1 number of extra gaps= 1 total=86809 # 1zk4A.123.2 read from T0547.t06.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)P128 (1zk4A)V8 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 1zk4A 3 :RLDGK T0547 129 :ITV 1zk4A 9 :AII Number of specific fragments extracted= 2 number of extra gaps= 1 total=86811 # 1uwcA.123.148 read from T0547.t06.many.frag # found chain 1uwcA in training set Warning: unaligning (T0547)A127 (1uwcA)V153 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1uwcA)R154 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEG 1uwcA 149 :TYDN T0547 129 :ITV 1uwcA 155 :LYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=86813 # 1ct5A.123.80 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)N124 (1ct5A)P83 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 123 :N 1ct5A 82 :L T0547 125 :E 1ct5A 84 :D T0547 128 :PITV 1ct5A 87 :KWHF Number of specific fragments extracted= 3 number of extra gaps= 2 total=86816 # 2b9eA.123.97 read from T0547.t06.many.frag # found chain 2b9eA in training set Warning: unaligning (T0547)N124 (2b9eA)P225 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2b9eA)H229 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :N 2b9eA 224 :P T0547 125 :EGA 2b9eA 226 :PGS T0547 129 :ITV 2b9eA 230 :VID Number of specific fragments extracted= 3 number of extra gaps= 2 total=86819 # 1q5xA.123.54 read from T0547.t06.many.frag # found chain 1q5xA in template set Warning: unaligning (T0547)P128 (1q5xA)V60 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNEGA 1q5xA 55 :NGRGR T0547 129 :ITV 1q5xA 61 :LVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86821 # 2b20A.123.225 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)G126 (2b20A)P226 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2b20A)V228 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :NNE 2b20A 223 :QLP T0547 127 :A 2b20A 227 :A T0547 129 :ITV 2b20A 229 :YVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=86824 # 1y1pA.123.7 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)N124 (1y1pA)P10 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E125 (1y1pA)E11 because P (beta_P) conformation "forbidden" or filtered. T0547 123 :N 1y1pA 9 :L T0547 126 :GAPITV 1y1pA 12 :GSLVLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86826 # 1o66A.123.74 read from T0547.t06.many.frag # found chain 1o66A in training set T0547 123 :NNEGAPITV 1o66A 73 :GAKNAMIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=86827 # 1r9jA.123.175 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)P128 (1r9jA)I179 because D (zeta) conformation "forbidden" or filtered. T0547 123 :NNEGA 1r9jA 174 :ALEKL T0547 129 :ITV 1r9jA 180 :VIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=86829 # 1fcdA.123.143 read from T0547.t06.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)P128 (1fcdA)T149 because S (epsilon) conformation "forbidden" or filtered. T0547 123 :NNEGA 1fcdA 144 :MADGG T0547 129 :ITV 1fcdA 150 :VVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=86831 # 1vp4A.123.129 read from T0547.t06.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)N124 (1vp4A)D119 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (1vp4A)E121 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vp4A)Y123 because E (beta_S) conformation "forbidden" or filtered. T0547 123 :N 1vp4A 118 :L T0547 125 :E 1vp4A 120 :D T0547 127 :A 1vp4A 122 :S T0547 129 :ITV 1vp4A 124 :CVL Number of specific fragments extracted= 4 number of extra gaps= 3 total=86835 # 1k92A.123.6 read from T0547.t06.many.frag # found chain 1k92A in training set T0547 123 :NNEGAPITV 1k92A 7 :LPVGQRIGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=86836 # 1y5mA.123.14 read from T0547.t06.many.frag # found chain 1y5mA in template set T0547 123 :NNEGAPITV 1y5mA 31 :MLQGKKVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=86837 # 1q0rA.123.91 read from T0547.t06.many.frag # found chain 1q0rA in training set Warning: unaligning (T0547)N123 (1q0rA)G92 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N124 (1q0rA)V93 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGAPITV 1q0rA 94 :DRAHVVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=86838 # 1wzuA.124.47 read from T0547.t06.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)G126 (1wzuA)A50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NE 1wzuA 48 :VD T0547 127 :A 1wzuA 51 :D T0547 129 :ITVN 1wzuA 53 :IVFA Number of specific fragments extracted= 3 number of extra gaps= 2 total=86841 # 2az4A.124.250 read from T0547.t06.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)N124 (2az4A)N251 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G126 (2az4A)N253 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. T0547 125 :E 2az4A 252 :P T0547 128 :PITVN 2az4A 255 :QITFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=86843 # 1c7nA.124.110 read from T0547.t06.many.frag # found chain 1c7nA in template set T0547 124 :NEGAPITVN 1c7nA 111 :KPGDGVIII Number of specific fragments extracted= 1 number of extra gaps= 0 total=86844 # 1qsgA.124.6 read from T0547.t06.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. T0547 124 :NEGA 1qsgA 4 :LSGK T0547 129 :ITVN 1qsgA 9 :ILVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=86846 # 1y1pA.124.8 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 124 :NEGAPITVN 1y1pA 10 :PEGSLVLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=86847 # 1v8bA.124.43 read from T0547.t06.many.frag # found chain 1v8bA in template set Warning: unaligning (T0547)E125 (1v8bA)K45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1v8bA)A47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1v8bA)K48 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :N 1v8bA 44 :L T0547 126 :G 1v8bA 46 :N T0547 129 :ITVN 1v8bA 49 :ITGC Number of specific fragments extracted= 3 number of extra gaps= 2 total=86850 # 1cs1A.124.88 read from T0547.t06.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 1cs1A 89 :KPGD T0547 129 :ITVN 1cs1A 94 :LVAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=86852 # 1y5mA.124.15 read from T0547.t06.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)N132 (1y5mA)T40 because P (beta_P) conformation "forbidden" or filtered. T0547 124 :NEGAPITV 1y5mA 32 :LQGKKVIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=86853 # 1i24A.124.8 read from T0547.t06.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)G126 because first residue in template chain is (1i24A)G1 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1i24A)S2 Warning: unaligning (T0547)P128 (1i24A)R3 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVN 1i24A 4 :VMVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=86854 # 2apjA.124.107 read from T0547.t06.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)A127 (2apjA)A111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2apjA)V112 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEG 2apjA 108 :TDS T0547 129 :ITVN 2apjA 113 :IGLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86856 # 1nytA.124.116 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)N124 (1nytA)R117 because Y (epsilon') conformation "forbidden" or filtered. T0547 125 :EGAPITVN 1nytA 118 :PGLRILLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=86857 # 1efdN.124.2 read from T0547.t06.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)P128 (1efdN)R37 because G (3-10) conformation "forbidden" or filtered. T0547 124 :NEGA 1efdN 33 :IDPN T0547 129 :ITVN 1efdN 38 :IVAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86859 # 7odcA.124.102 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E125 (7odcA)P104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 124 :N 7odcA 103 :V T0547 126 :GA 7odcA 105 :AE T0547 129 :ITVN 7odcA 108 :VIYA Number of specific fragments extracted= 3 number of extra gaps= 2 total=86862 # 2etjA.124.110 read from T0547.t06.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)G126 (2etjA)P101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2etjA)F103 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NE 2etjA 99 :VK T0547 127 :A 2etjA 102 :S T0547 129 :ITVN 2etjA 104 :VLVD Number of specific fragments extracted= 3 number of extra gaps= 2 total=86865 # 1fcdA.124.144 read from T0547.t06.many.frag # found chain 1fcdA in template set T0547 124 :NEGAPITVN 1fcdA 145 :ADGGTVVIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86866 # 1ej0A.124.44 read from T0547.t06.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)G126 (1ej0A)K76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 124 :NE 1ej0A 74 :GG T0547 127 :A 1ej0A 77 :G T0547 129 :ITVN 1ej0A 79 :IIAC Number of specific fragments extracted= 3 number of extra gaps= 2 total=86869 # 1vp4A.124.130 read from T0547.t06.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)G126 (1vp4A)E121 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vp4A)Y123 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vp4A)D128 T0547 124 :NE 1vp4A 119 :DD T0547 127 :A 1vp4A 122 :S T0547 129 :ITV 1vp4A 124 :CVL Number of specific fragments extracted= 3 number of extra gaps= 3 total=86872 # 1ne2A.124.49 read from T0547.t06.many.frag # found chain 1ne2A in training set Warning: unaligning (T0547)A127 (1ne2A)R50 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEG 1ne2A 47 :IGG T0547 128 :PITVN 1ne2A 51 :SVIDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86874 # 1ofuX.124.54 read from T0547.t06.many.frag # found chain 1ofuX in template set Warning: unaligning (T0547)P128 (1ofuX)R101 because G (3-10) conformation "forbidden" or filtered. T0547 124 :NEGA 1ofuX 97 :LNRE T0547 129 :ITVN 1ofuX 102 :ILLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86876 # 2f62A.124.6 read from T0547.t06.many.frag # found chain 2f62A in training set Warning: unaligning (T0547)E125 (2f62A)H8 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2f62A)K11 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :N 2f62A 7 :H T0547 126 :GA 2f62A 9 :MR T0547 129 :ITVN 2f62A 12 :IYIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=86879 # 1nt2A.124.55 read from T0547.t06.many.frag # found chain 1nt2A in template set T0547 124 :NEGAPITVN 1nt2A 56 :RGDERVLYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=86880 # 1rkxA.124.6 read from T0547.t06.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)E125 (1rkxA)Q8 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A127 (1rkxA)K10 because P (beta_P) conformation "forbidden" or filtered. T0547 124 :N 1rkxA 7 :W T0547 126 :G 1rkxA 9 :G T0547 128 :PITVN 1rkxA 11 :RVFVT Number of specific fragments extracted= 3 number of extra gaps= 2 total=86883 # 1k92A.124.7 read from T0547.t06.many.frag # found chain 1k92A in training set T0547 124 :NEGAPITVN 1k92A 8 :PVGQRIGIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86884 # 1id1A.124.1 read from T0547.t06.many.frag # found chain 1id1A in template set Warning: unaligning (T0547)A127 (1id1A)H7 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1id1A)F8 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1id1A)G12 because S (epsilon) conformation "forbidden" or filtered. T0547 124 :NEG 1id1A 4 :RKD T0547 129 :ITV 1id1A 9 :IVC Number of specific fragments extracted= 2 number of extra gaps= 2 total=86886 # 1o66A.124.75 read from T0547.t06.many.frag # found chain 1o66A in training set Warning: unaligning (T0547)N124 (1o66A)A74 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGAPITVN 1o66A 75 :KNAMIVSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=86887 # 1oxxK.124.156 read from T0547.t06.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)E125 (1oxxK)D158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1oxxK)L161 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :N 1oxxK 157 :K T0547 126 :GA 1oxxK 159 :PS T0547 129 :ITVN 1oxxK 162 :LLLD Number of specific fragments extracted= 3 number of extra gaps= 2 total=86890 # 1lzlA.124.148 read from T0547.t06.many.frag # found chain 1lzlA in training set Warning: unaligning (T0547)A127 (1lzlA)S152 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1lzlA)R153 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1lzlA)G157 because Y (epsilon') conformation "forbidden" or filtered. T0547 124 :NEG 1lzlA 149 :IDP T0547 129 :ITV 1lzlA 154 :IAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=86892 # 2fnaA.124.134 read from T0547.t06.many.frag # found chain 2fnaA in template set Warning: unaligning (T0547)G126 (2fnaA)D136 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2fnaA)V138 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NE 2fnaA 134 :SK T0547 127 :A 2fnaA 137 :N T0547 129 :ITVN 2fnaA 139 :IIVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=86895 # 1ct5A.124.81 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 124 :NE 1ct5A 83 :PD T0547 128 :PITVN 1ct5A 87 :KWHFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=86897 # 1uslA.124.67 read from T0547.t06.many.frag # found chain 1uslA in template set Warning: unaligning (T0547)P128 (1uslA)L64 because E (beta_S) conformation "forbidden" or filtered. T0547 124 :NEGA 1uslA 60 :DPGS T0547 129 :ITVN 1uslA 65 :GIVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86899 # 1wzuA.125.48 read from T0547.t06.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 1wzuA 49 :DAD T0547 129 :ITVNG 1wzuA 53 :IVFAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=86901 # 2az4A.125.251 read from T0547.t06.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)G126 (2az4A)N253 because D (zeta) conformation "forbidden" or filtered. T0547 125 :E 2az4A 252 :P T0547 127 :APITVNG 2az4A 254 :RQITFNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=86903 # 1qsgA.125.7 read from T0547.t06.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. T0547 125 :EGA 1qsgA 5 :SGK T0547 129 :ITVNG 1qsgA 9 :ILVTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=86905 # 1y5mA.125.16 read from T0547.t06.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)N132 (1y5mA)T40 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGAPITV 1y5mA 33 :QGKKVIV T0547 133 :G 1y5mA 41 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=86907 # 1v8bA.125.44 read from T0547.t06.many.frag # found chain 1v8bA in template set Warning: unaligning (T0547)P128 (1v8bA)K48 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 1v8bA 45 :KNA T0547 129 :ITVNG 1v8bA 49 :ITGCL Number of specific fragments extracted= 2 number of extra gaps= 1 total=86909 # 1c7nA.125.111 read from T0547.t06.many.frag # found chain 1c7nA in template set T0547 125 :EGAPITVNG 1c7nA 112 :PGDGVIIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=86910 # 1nytA.125.117 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)N132 (1nytA)I125 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGAPITV 1nytA 118 :PGLRILL T0547 133 :G 1nytA 126 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=86912 # 1ct5A.125.82 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 T0547 125 :E 1ct5A 84 :D T0547 128 :PITVNG 1ct5A 87 :KWHFIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=86914 # 7odcA.125.103 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 125 :EGA 7odcA 104 :PAE T0547 129 :ITVNG 7odcA 108 :VIYAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=86916 # 1y1pA.125.9 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)N132 (1y1pA)T18 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGAPITV 1y1pA 11 :EGSLVLV T0547 133 :G 1y1pA 19 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=86918 # 1efdN.125.3 read from T0547.t06.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)P128 (1efdN)R37 because G (3-10) conformation "forbidden" or filtered. T0547 125 :EGA 1efdN 34 :DPN T0547 129 :ITVNG 1efdN 38 :IVALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=86920 # 1i24A.125.9 read from T0547.t06.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)G126 because first residue in template chain is (1i24A)G1 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1i24A)S2 Warning: unaligning (T0547)P128 (1i24A)R3 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNG 1i24A 4 :VMVIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=86921 # 1nt2A.125.56 read from T0547.t06.many.frag # found chain 1nt2A in template set Warning: unaligning (T0547)G126 (1nt2A)D58 because N (gamma') conformation "forbidden" or filtered. T0547 125 :E 1nt2A 57 :G T0547 127 :APITVNG 1nt2A 59 :ERVLYLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=86923 # 2etjA.125.111 read from T0547.t06.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)P128 (2etjA)F103 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 2etjA 100 :KPS T0547 129 :ITVNG 2etjA 104 :VLVDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=86925 # 1rkxA.125.7 read from T0547.t06.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)A127 (1rkxA)K10 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1rkxA)T15 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EG 1rkxA 8 :QG T0547 128 :PITV 1rkxA 11 :RVFV T0547 133 :G 1rkxA 16 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=86928 # 1cs1A.125.89 read from T0547.t06.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 1cs1A 90 :PGD T0547 129 :ITVNG 1cs1A 94 :LVAPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=86930 # 2apjA.125.108 read from T0547.t06.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)P128 (2apjA)V112 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 2apjA 109 :DSA T0547 129 :ITVNG 2apjA 113 :IGLVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=86932 # 1vp4A.125.131 read from T0547.t06.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)G126 (1vp4A)E121 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vp4A)Y123 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vp4A)D128 Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vp4A)D128 T0547 125 :E 1vp4A 120 :D T0547 127 :A 1vp4A 122 :S T0547 129 :ITV 1vp4A 124 :CVL Number of specific fragments extracted= 3 number of extra gaps= 3 total=86935 # 2f62A.125.7 read from T0547.t06.many.frag # found chain 2f62A in training set Warning: unaligning (T0547)E125 (2f62A)H8 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2f62A)K11 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 2f62A 9 :MR T0547 129 :ITVNG 2f62A 12 :IYIAG Number of specific fragments extracted= 2 number of extra gaps= 2 total=86937 # 1ej0A.125.45 read from T0547.t06.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 125 :EGA 1ej0A 75 :GKG T0547 129 :ITVNG 1ej0A 79 :IIACD Number of specific fragments extracted= 2 number of extra gaps= 1 total=86939 # 1vi6A.125.114 read from T0547.t06.many.frag # found chain 1vi6A in template set Warning: unaligning (T0547)E125 (1vi6A)E114 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vi6A)V117 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1vi6A)D122 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1vi6A 115 :PE T0547 129 :ITVN 1vi6A 118 :VFVN Number of specific fragments extracted= 2 number of extra gaps= 3 total=86941 # 1ofuX.125.55 read from T0547.t06.many.frag # found chain 1ofuX in template set Warning: unaligning (T0547)P128 (1ofuX)R101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1ofuX)Q106 because P (beta_P) conformation "forbidden" or filtered. T0547 125 :EGA 1ofuX 98 :NRE T0547 129 :ITVN 1ofuX 102 :ILLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=86943 # 1id1A.125.2 read from T0547.t06.many.frag # found chain 1id1A in template set Warning: unaligning (T0547)P128 (1id1A)F8 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1id1A)H13 because G (3-10) conformation "forbidden" or filtered. T0547 125 :EGA 1id1A 5 :KDH T0547 129 :ITVN 1id1A 9 :IVCG Number of specific fragments extracted= 2 number of extra gaps= 2 total=86945 # 1fcdA.125.145 read from T0547.t06.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)P128 (1fcdA)T149 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE in next template residue (1fcdA)P155 T0547 125 :EGA 1fcdA 146 :DGG T0547 129 :ITVN 1fcdA 150 :VVIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=86947 # 1zk4A.125.4 read from T0547.t06.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)P128 (1zk4A)V8 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 1zk4A 5 :DGK T0547 129 :ITVNG 1zk4A 9 :AIITG Number of specific fragments extracted= 2 number of extra gaps= 1 total=86949 # 2ak3A.125.81 read from T0547.t06.many.frag # found chain 2ak3A in template set Warning: unaligning (T0547)G126 (2ak3A)Q82 because G (3-10) conformation "forbidden" or filtered. T0547 125 :E 2ak3A 81 :T T0547 127 :APITVNG 2ak3A 83 :YNWLLDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=86951 # 1uslA.125.68 read from T0547.t06.many.frag # found chain 1uslA in template set Warning: unaligning (T0547)P128 (1uslA)L64 because E (beta_S) conformation "forbidden" or filtered. T0547 125 :EGA 1uslA 61 :PGS T0547 129 :ITVNG 1uslA 65 :GIVLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=86953 # 2fnuA.125.72 read from T0547.t06.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)P128 (2fnuA)E76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V131 (2fnuA)T79 because Y (epsilon') conformation "forbidden" or filtered. T0547 125 :EGA 2fnuA 73 :DRN T0547 129 :IT 2fnuA 77 :II T0547 132 :NG 2fnuA 80 :TP Number of specific fragments extracted= 3 number of extra gaps= 2 total=86956 # 1lzlA.125.149 read from T0547.t06.many.frag # found chain 1lzlA in training set Warning: unaligning (T0547)P128 (1lzlA)R153 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1lzlA)G157 because Y (epsilon') conformation "forbidden" or filtered. T0547 125 :EGA 1lzlA 150 :DPS T0547 129 :ITV 1lzlA 154 :IAV T0547 133 :G 1lzlA 158 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=86959 # 1k92A.125.8 read from T0547.t06.many.frag # found chain 1k92A in training set Warning: unaligning (T0547)G133 (1k92A)F17 because N (gamma') conformation "forbidden" or filtered. T0547 125 :EGAPITVN 1k92A 9 :VGQRIGIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=86960 # 1wzuA.126.49 read from T0547.t06.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)G126 (1wzuA)A50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1wzuA 51 :D T0547 129 :ITVNGF 1wzuA 53 :IVFAGV Number of specific fragments extracted= 2 number of extra gaps= 2 total=86962 # 2az4A.126.252 read from T0547.t06.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)A127 (2az4A)R254 because Y (epsilon') conformation "forbidden" or filtered. T0547 126 :G 2az4A 253 :N T0547 128 :PITVNGF 2az4A 255 :QITFNGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=86964 # 1qsgA.126.8 read from T0547.t06.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. T0547 126 :GA 1qsgA 6 :GK T0547 129 :ITVNGF 1qsgA 9 :ILVTGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=86966 # 1y5mA.126.17 read from T0547.t06.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)N132 (1y5mA)T40 because P (beta_P) conformation "forbidden" or filtered. T0547 126 :GAPITV 1y5mA 34 :GKKVIV T0547 133 :GF 1y5mA 41 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=86968 # 1ct5A.126.83 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G126 because of BadResidue code BAD_PEPTIDE in next template residue (1ct5A)I86 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 Warning: unaligning (T0547)G133 (1ct5A)G92 because Y (epsilon') conformation "forbidden" or filtered. T0547 128 :PITVN 1ct5A 87 :KWHFI T0547 134 :F 1ct5A 93 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=86970 # 1c7nA.126.112 read from T0547.t06.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)F134 (1c7nA)P121 because C (cis) conformation "forbidden" or filtered. T0547 126 :GAPITVNG 1c7nA 113 :GDGVIIIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=86971 # 1v8bA.126.45 read from T0547.t06.many.frag # found chain 1v8bA in template set Warning: unaligning (T0547)P128 (1v8bA)K48 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1v8bA)L53 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1v8bA 46 :NA T0547 129 :ITVN 1v8bA 49 :ITGC T0547 134 :F 1v8bA 54 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=86974 # 1y1pA.126.10 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 126 :GAPITVNGF 1y1pA 12 :GSLVLVTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86975 # 1nt2A.126.57 read from T0547.t06.many.frag # found chain 1nt2A in template set T0547 126 :GAPITVNGF 1nt2A 58 :DERVLYLGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=86976 # 1nytA.126.118 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)G133 (1nytA)G126 because S (epsilon) conformation "forbidden" or filtered. T0547 126 :GAPITVN 1nytA 119 :GLRILLI T0547 134 :F 1nytA 127 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=86978 # 7odcA.126.104 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P128 (7odcA)R107 because G (3-10) conformation "forbidden" or filtered. T0547 126 :GA 7odcA 105 :AE T0547 129 :ITVNGF 7odcA 108 :VIYANP Number of specific fragments extracted= 2 number of extra gaps= 1 total=86980 # 1ej0A.126.46 read from T0547.t06.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1ej0A)D83 because Y (epsilon') conformation "forbidden" or filtered. T0547 126 :GA 1ej0A 76 :KG T0547 129 :ITVN 1ej0A 79 :IIAC T0547 134 :F 1ej0A 84 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=86983 # 1i24A.126.10 read from T0547.t06.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)G126 because first residue in template chain is (1i24A)G1 Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1i24A)S2 Warning: unaligning (T0547)P128 (1i24A)R3 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1i24A 4 :VMVIGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=86984 # 1rkxA.126.8 read from T0547.t06.many.frag # found chain 1rkxA in template set T0547 126 :GAPITVNGF 1rkxA 9 :GKRVFVTGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=86985 # 1cs1A.126.90 read from T0547.t06.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1cs1A 91 :GD T0547 129 :ITVNGF 1cs1A 94 :LVAPHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=86987 # 1vp4A.126.132 read from T0547.t06.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)P128 (1vp4A)Y123 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vp4A)D128 Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vp4A)D128 Warning: unaligning (T0547)F134 (1vp4A)P129 because C (cis) conformation "forbidden" or filtered. T0547 126 :GA 1vp4A 121 :ES T0547 129 :ITV 1vp4A 124 :CVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=86989 # 2etjA.126.112 read from T0547.t06.many.frag # found chain 2etjA in training set Warning: unaligning (T0547)P128 (2etjA)F103 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 2etjA 101 :PS T0547 129 :ITVNGF 2etjA 104 :VLVDGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=86991 # 2fnuA.126.73 read from T0547.t06.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)G126 (2fnuA)R74 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (2fnuA)E76 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 2fnuA 75 :N T0547 129 :ITVNGF 2fnuA 77 :IITTPI Number of specific fragments extracted= 2 number of extra gaps= 2 total=86993 # 1vi6A.126.115 read from T0547.t06.many.frag # found chain 1vi6A in template set Warning: unaligning (T0547)G126 (1vi6A)P115 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1vi6A)V117 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1vi6A 116 :E T0547 129 :ITVNGF 1vi6A 118 :VFVNDP Number of specific fragments extracted= 2 number of extra gaps= 2 total=86995 # 1uslA.126.69 read from T0547.t06.many.frag # found chain 1uslA in template set Warning: unaligning (T0547)A127 (1uslA)S63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1uslA)L64 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :G 1uslA 62 :G T0547 129 :ITVNGF 1uslA 65 :GIVLGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=86997 # 1kaeA.126.154 read from T0547.t06.many.frag # found chain 1kaeA in training set Warning: unaligning (T0547)P128 (1kaeA)V157 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1kaeA)P162 because P (beta_P) conformation "forbidden" or filtered. T0547 126 :GA 1kaeA 155 :KK T0547 129 :ITVN 1kaeA 158 :VLCS T0547 134 :F 1kaeA 163 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=87000 # 1yzyA.126.245 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)P128 (1yzyA)T247 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1yzyA 245 :GK T0547 129 :ITVNGF 1yzyA 248 :VVLSGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=87002 # 1fyeA.126.79 read from T0547.t06.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)P128 (1fyeA)I82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1fyeA)G88 because S (epsilon) conformation "forbidden" or filtered. T0547 126 :GA 1fyeA 80 :AE T0547 129 :ITVNG 1fyeA 83 :IIVGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=87004 # 1zk4A.126.5 read from T0547.t06.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)P128 (1zk4A)V8 because E (beta_S) conformation "forbidden" or filtered. T0547 126 :GA 1zk4A 6 :GK T0547 129 :ITVNGF 1zk4A 9 :AIITGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=87006 # 2f62A.126.8 read from T0547.t06.many.frag # found chain 2f62A in training set Warning: unaligning (T0547)P128 (2f62A)K11 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (2f62A)P17 because G (3-10) conformation "forbidden" or filtered. T0547 126 :GA 2f62A 9 :MR T0547 129 :ITVNG 2f62A 12 :IYIAG Number of specific fragments extracted= 2 number of extra gaps= 2 total=87008 # 1v77A.126.52 read from T0547.t06.many.frag # found chain 1v77A in training set Warning: unaligning (T0547)A127 (1v77A)K54 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1v77A)V55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1v77A)S60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1v77A)N61 because L (left) conformation "forbidden" or filtered. T0547 126 :G 1v77A 53 :G T0547 129 :ITVN 1v77A 56 :AILL Number of specific fragments extracted= 2 number of extra gaps= 2 total=87010 # 1id1A.126.3 read from T0547.t06.many.frag # found chain 1id1A in template set Warning: unaligning (T0547)P128 (1id1A)F8 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1id1A)G12 because S (epsilon) conformation "forbidden" or filtered. T0547 126 :GA 1id1A 6 :DH T0547 129 :ITV 1id1A 9 :IVC T0547 133 :GF 1id1A 13 :HS Number of specific fragments extracted= 3 number of extra gaps= 2 total=87013 # 1mugA.126.8 read from T0547.t06.many.frag # found chain 1mugA in training set T0547 126 :GAPITVNGF 1mugA 9 :GLRVVFCGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87014 # 1km4A.126.91 read from T0547.t06.many.frag # found chain 1km4A in template set Warning: unaligning (T0547)G126 (1km4A)A92 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1km4A)A94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1km4A)G99 because G (3-10) conformation "forbidden" or filtered. T0547 127 :A 1km4A 93 :D T0547 129 :ITVN 1km4A 95 :IIVH T0547 134 :F 1km4A 100 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=87017 # 1knwA.126.94 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G126 (1knwA)D95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1knwA)I97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1knwA)A101 because Y (epsilon') conformation "forbidden" or filtered. T0547 127 :A 1knwA 96 :D T0547 129 :ITV 1knwA 98 :VFT T0547 133 :GF 1knwA 102 :DV Number of specific fragments extracted= 3 number of extra gaps= 3 total=87020 # 1qsgA.127.9 read from T0547.t06.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. T0547 127 :A 1qsgA 7 :K T0547 129 :ITVNGFK 1qsgA 9 :ILVTGVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87022 # 1y5mA.127.18 read from T0547.t06.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)N132 (1y5mA)T40 because P (beta_P) conformation "forbidden" or filtered. T0547 127 :APITV 1y5mA 35 :KKVIV T0547 133 :GFK 1y5mA 41 :GAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=87024 # 1km4A.127.92 read from T0547.t06.many.frag # found chain 1km4A in template set Warning: unaligning (T0547)P128 (1km4A)A94 because Y (epsilon') conformation "forbidden" or filtered. T0547 127 :A 1km4A 93 :D T0547 129 :ITVNGFK 1km4A 95 :IIVHGFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=87026 # 1y1pA.127.11 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 127 :APITVNGFK 1y1pA 13 :SLVLVTGAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=87027 # 1c7nA.127.113 read from T0547.t06.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)F134 (1c7nA)P121 because C (cis) conformation "forbidden" or filtered. T0547 127 :APITVNG 1c7nA 114 :DGVIIIT T0547 135 :K 1c7nA 122 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=87029 # 1fyeA.127.80 read from T0547.t06.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)P128 (1fyeA)I82 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1fyeA 81 :E T0547 129 :ITVNGFK 1fyeA 83 :IIVGGGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=87031 # 2fnuA.127.74 read from T0547.t06.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)P128 (2fnuA)E76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (2fnuA)T80 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (2fnuA)S83 because Y (epsilon') conformation "forbidden" or filtered. T0547 127 :A 2fnuA 75 :N T0547 129 :ITV 2fnuA 77 :IIT T0547 133 :GF 2fnuA 81 :PI Number of specific fragments extracted= 3 number of extra gaps= 3 total=87034 # 1ct5A.127.84 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1ct5A)I86 Warning: unaligning (T0547)G133 (1ct5A)G92 because Y (epsilon') conformation "forbidden" or filtered. T0547 128 :PITVN 1ct5A 87 :KWHFI T0547 134 :FK 1ct5A 93 :GL Number of specific fragments extracted= 2 number of extra gaps= 2 total=87036 # 1rkxA.127.9 read from T0547.t06.many.frag # found chain 1rkxA in template set T0547 127 :APITVNGFK 1rkxA 10 :KRVFVTGHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87037 # 1vp4A.127.133 read from T0547.t06.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)P128 (1vp4A)Y123 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vp4A)D128 Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vp4A)D128 Warning: unaligning (T0547)F134 (1vp4A)P129 because C (cis) conformation "forbidden" or filtered. T0547 127 :A 1vp4A 122 :S T0547 129 :ITV 1vp4A 124 :CVL T0547 135 :K 1vp4A 130 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=87040 # 1yzyA.127.246 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)P128 (1yzyA)T247 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1yzyA)G252 because G (3-10) conformation "forbidden" or filtered. T0547 127 :A 1yzyA 246 :K T0547 129 :ITVN 1yzyA 248 :VVLS T0547 134 :FK 1yzyA 253 :SC Number of specific fragments extracted= 3 number of extra gaps= 2 total=87043 # 2az4A.127.253 read from T0547.t06.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)N132 (2az4A)N259 because Y (epsilon') conformation "forbidden" or filtered. T0547 127 :APITV 2az4A 254 :RQITF T0547 133 :GFK 2az4A 260 :GYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=87045 # 1cs1A.127.91 read from T0547.t06.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1cs1A)D99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1cs1A)C100 because P (beta_P) conformation "forbidden" or filtered. T0547 127 :A 1cs1A 92 :D T0547 129 :ITVNG 1cs1A 94 :LVAPH Number of specific fragments extracted= 2 number of extra gaps= 2 total=87047 # 1i24A.127.11 read from T0547.t06.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)A127 because of BadResidue code BAD_PEPTIDE at template residue (1i24A)S2 Warning: unaligning (T0547)P128 (1i24A)R3 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1i24A 4 :VMVIGGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=87048 # 1zk4A.127.6 read from T0547.t06.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)P128 (1zk4A)V8 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1zk4A 7 :K T0547 129 :ITVNGFK 1zk4A 9 :AIITGGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=87050 # 1uslA.127.70 read from T0547.t06.many.frag # found chain 1uslA in template set Warning: unaligning (T0547)P128 (1uslA)L64 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1uslA 63 :S T0547 129 :ITVNGFK 1uslA 65 :GIVLGGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=87052 # 1yacA.127.105 read from T0547.t06.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE in next template residue (1yacA)V114 Warning: unaligning (T0547)K135 because of BadResidue code BAD_PEPTIDE at template residue (1yacA)V114 T0547 127 :APITVNG 1yacA 106 :KQLIIAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=87053 # 1wzuA.127.50 read from T0547.t06.many.frag # found chain 1wzuA in template set Warning: unaligning (T0547)P128 (1wzuA)V52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1wzuA)G57 because Y (epsilon') conformation "forbidden" or filtered. T0547 127 :A 1wzuA 51 :D T0547 129 :ITVN 1wzuA 53 :IVFA T0547 134 :FK 1wzuA 58 :VD Number of specific fragments extracted= 3 number of extra gaps= 2 total=87056 # 1kaeA.127.155 read from T0547.t06.many.frag # found chain 1kaeA in training set Warning: unaligning (T0547)P128 (1kaeA)V157 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1kaeA)P164 because C (cis) conformation "forbidden" or filtered. T0547 127 :A 1kaeA 156 :K T0547 129 :ITVNGF 1kaeA 158 :VLCSPP Number of specific fragments extracted= 2 number of extra gaps= 2 total=87058 # 1v77A.127.53 read from T0547.t06.many.frag # found chain 1v77A in training set Warning: unaligning (T0547)P128 (1v77A)V55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1v77A)S60 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1v77A 54 :K T0547 129 :ITVN 1v77A 56 :AILL T0547 134 :FK 1v77A 61 :NP Number of specific fragments extracted= 3 number of extra gaps= 2 total=87061 # 1s95A.127.97 read from T0547.t06.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)A127 (1s95A)N264 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1s95A)D271 because L (left) conformation "forbidden" or filtered. T0547 128 :PITVNG 1s95A 265 :PYIFNG T0547 135 :K 1s95A 272 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=87063 # 1nt2A.127.58 read from T0547.t06.many.frag # found chain 1nt2A in template set Warning: unaligning (T0547)K135 (1nt2A)A67 because S (epsilon) conformation "forbidden" or filtered. T0547 127 :APITVNGF 1nt2A 59 :ERVLYLGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=87064 # 1vi6A.127.116 read from T0547.t06.many.frag # found chain 1vi6A in template set Warning: unaligning (T0547)P128 (1vi6A)V117 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1vi6A 116 :E T0547 129 :ITVNGFK 1vi6A 118 :VFVNDPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87066 # 1nytA.127.119 read from T0547.t06.many.frag # found chain 1nytA in training set T0547 127 :APITVNGFK 1nytA 120 :LRILLIGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87067 # 1v8bA.127.46 read from T0547.t06.many.frag # found chain 1v8bA in template set Warning: unaligning (T0547)A127 (1v8bA)A47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P128 (1v8bA)K48 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1v8bA 49 :ITGCLHM Number of specific fragments extracted= 1 number of extra gaps= 1 total=87068 # 1knwA.127.95 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P128 (1knwA)I97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1knwA)A101 because Y (epsilon') conformation "forbidden" or filtered. T0547 127 :A 1knwA 96 :D T0547 129 :ITV 1knwA 98 :VFT T0547 133 :GFK 1knwA 102 :DVI Number of specific fragments extracted= 3 number of extra gaps= 2 total=87071 # 1t2dA.127.28 read from T0547.t06.many.frag # found chain 1t2dA in training set Warning: unaligning (T0547)A127 (1t2dA)G28 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1t2dA)D34 because Y (epsilon') conformation "forbidden" or filtered. T0547 128 :PITVN 1t2dA 29 :DVVLF T0547 134 :FK 1t2dA 35 :IV Number of specific fragments extracted= 2 number of extra gaps= 2 total=87073 # 1nmoA.127.35 read from T0547.t06.many.frag # found chain 1nmoA in template set Warning: unaligning (T0547)P128 (1nmoA)K37 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1nmoA)G41 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1nmoA)A44 because N (gamma') conformation "forbidden" or filtered. T0547 127 :A 1nmoA 36 :Q T0547 129 :ITV 1nmoA 38 :IVT T0547 133 :GF 1nmoA 42 :VT Number of specific fragments extracted= 3 number of extra gaps= 3 total=87076 # 1ej0A.127.47 read from T0547.t06.many.frag # found chain 1ej0A in training set Warning: unaligning (T0547)P128 (1ej0A)R78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1ej0A)C82 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1ej0A 77 :G T0547 129 :ITV 1ej0A 79 :IIA T0547 133 :GFK 1ej0A 83 :DLL Number of specific fragments extracted= 3 number of extra gaps= 2 total=87079 # 1v72A.127.83 read from T0547.t06.many.frag # found chain 1v72A in template set Warning: unaligning (T0547)P128 (1v72A)N85 because E (beta_S) conformation "forbidden" or filtered. T0547 127 :A 1v72A 84 :G T0547 129 :ITVNGFK 1v72A 86 :IYCHPAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=87081 # 1km4A.128.93 read from T0547.t06.many.frag # found chain 1km4A in template set Warning: unaligning (T0547)P128 (1km4A)A94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1km4A)G99 because G (3-10) conformation "forbidden" or filtered. T0547 129 :ITVN 1km4A 95 :IIVH T0547 134 :FKD 1km4A 100 :FPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=87083 # 1ct5A.128.85 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 128 :PITVNGFKD 1ct5A 87 :KWHFIGGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=87084 # 1qsgA.128.10 read from T0547.t06.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)P128 (1qsgA)R8 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1qsgA)S16 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1qsgA 9 :ILVTGVA Number of specific fragments extracted= 1 number of extra gaps= 2 total=87085 # 2fnuA.128.75 read from T0547.t06.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)P128 (2fnuA)E76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (2fnuA)T80 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (2fnuA)S83 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITV 2fnuA 77 :IIT T0547 133 :GF 2fnuA 81 :PI T0547 136 :D 2fnuA 84 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=87088 # 1y5mA.128.19 read from T0547.t06.many.frag # found chain 1y5mA in template set T0547 128 :PITVNGFKD 1y5mA 36 :KVIVTGASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87089 # 1y1pA.128.12 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 128 :PITVNGFKD 1y1pA 14 :LVLVTGANG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87090 # 1fyeA.128.81 read from T0547.t06.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)P128 (1fyeA)I82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1fyeA)G88 because S (epsilon) conformation "forbidden" or filtered. T0547 129 :ITVNG 1fyeA 83 :IIVGG T0547 135 :KD 1fyeA 89 :NT Number of specific fragments extracted= 2 number of extra gaps= 2 total=87092 # 1rkxA.128.10 read from T0547.t06.many.frag # found chain 1rkxA in template set T0547 128 :PITVNGFKD 1rkxA 11 :RVFVTGHTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87093 # 1yacA.128.106 read from T0547.t06.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)N132 (1yacA)A111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE in next template residue (1yacA)V114 Warning: unaligning (T0547)K135 because of BadResidue code BAD_PEPTIDE at template residue (1yacA)V114 T0547 128 :PITV 1yacA 107 :QLII T0547 133 :G 1yacA 112 :G T0547 136 :D 1yacA 115 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=87096 # 1yzyA.128.247 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)P128 (1yzyA)T247 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1yzyA 248 :VVLSGSCS Number of specific fragments extracted= 1 number of extra gaps= 1 total=87097 # 1c7nA.128.114 read from T0547.t06.many.frag # found chain 1c7nA in template set Warning: unaligning (T0547)G133 (1c7nA)T120 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1c7nA)P121 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1c7nA)V122 because Y (epsilon') conformation "forbidden" or filtered. T0547 128 :PITVN 1c7nA 115 :GVIII T0547 136 :D 1c7nA 123 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=87099 # 1thfD.128.76 read from T0547.t06.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)P128 (1thfD)F77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1thfD)G81 because L (left) conformation "forbidden" or filtered. T0547 129 :ITV 1thfD 78 :TVG T0547 133 :GFKD 1thfD 82 :GIHD Number of specific fragments extracted= 2 number of extra gaps= 2 total=87101 # 1vp4A.128.134 read from T0547.t06.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)P128 (1vp4A)Y123 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V131 (1vp4A)L126 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vp4A)D128 Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vp4A)D128 Warning: unaligning (T0547)F134 (1vp4A)P129 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1vp4A)Y131 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :IT 1vp4A 124 :CV T0547 135 :K 1vp4A 130 :A Number of specific fragments extracted= 2 number of extra gaps= 3 total=87103 # 1i24A.128.12 read from T0547.t06.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)P128 (1i24A)R3 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1i24A 4 :VMVIGGDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=87104 # 1uslA.128.71 read from T0547.t06.many.frag # found chain 1uslA in template set Warning: unaligning (T0547)P128 (1uslA)L64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1uslA)G72 because T (delta_L) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1uslA 65 :GIVLGGS Number of specific fragments extracted= 1 number of extra gaps= 2 total=87105 # 1v77A.128.54 read from T0547.t06.many.frag # found chain 1v77A in training set Warning: unaligning (T0547)P128 (1v77A)V55 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1v77A 56 :AILLSNPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=87106 # 1zk4A.128.7 read from T0547.t06.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)P128 (1zk4A)V8 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 because of BadResidue code BAD_PEPTIDE in next template residue (1zk4A)G17 T0547 129 :ITVNGFK 1zk4A 9 :AIITGGT Number of specific fragments extracted= 1 number of extra gaps= 2 total=87107 # 1t2dA.128.29 read from T0547.t06.many.frag # found chain 1t2dA in training set Warning: unaligning (T0547)N132 (1t2dA)F33 because P (beta_P) conformation "forbidden" or filtered. T0547 128 :PITV 1t2dA 29 :DVVL T0547 133 :GFKD 1t2dA 34 :DIVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=87109 # 1tt7A.128.152 read from T0547.t06.many.frag # found chain 1tt7A in template set Warning: unaligning (T0547)N132 (1tt7A)T157 because P (beta_P) conformation "forbidden" or filtered. T0547 128 :PITV 1tt7A 153 :SVLV T0547 133 :GFKD 1tt7A 158 :GATG Number of specific fragments extracted= 2 number of extra gaps= 1 total=87111 # 1cs1A.128.92 read from T0547.t06.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P128 (1cs1A)L93 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1cs1A 94 :LVAPHDCY Number of specific fragments extracted= 1 number of extra gaps= 1 total=87112 # 1nt2A.128.59 read from T0547.t06.many.frag # found chain 1nt2A in template set Warning: unaligning (T0547)K135 (1nt2A)A67 because S (epsilon) conformation "forbidden" or filtered. T0547 128 :PITVNGF 1nt2A 60 :RVLYLGA T0547 136 :D 1nt2A 68 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=87114 # 2b20A.128.230 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)P128 (2b20A)V228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2b20A)A234 Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2b20A)A234 T0547 129 :ITVN 2b20A 229 :YVLI T0547 135 :KD 2b20A 235 :ID Number of specific fragments extracted= 2 number of extra gaps= 2 total=87116 # 1owlA.128.94 read from T0547.t06.many.frag # found chain 1owlA in training set Warning: unaligning (T0547)P128 (1owlA)A95 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1owlA)Q100 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVN 1owlA 96 :VYWN T0547 134 :FKD 1owlA 101 :DIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=87118 # 1iirA.128.1 read from T0547.t06.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)P128 (1iirA)R2 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1iirA)G9 because T (delta_L) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1iirA 3 :VLLATC T0547 136 :D 1iirA 10 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=87120 # 1knwA.128.96 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P128 (1knwA)I97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1knwA)A101 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITV 1knwA 98 :VFT T0547 133 :GFKD 1knwA 102 :DVID Number of specific fragments extracted= 2 number of extra gaps= 2 total=87122 # 1tvlA.128.213 read from T0547.t06.many.frag # found chain 1tvlA in template set Warning: unaligning (T0547)K135 (1tvlA)S219 because G (3-10) conformation "forbidden" or filtered. T0547 128 :PITVNGF 1tvlA 212 :PVVFQAG T0547 136 :D 1tvlA 220 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=87124 # 1epuA.128.99 read from T0547.t06.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)P128 (1epuA)H100 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)T130 (1epuA)F102 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1epuA)E105 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :I 1epuA 101 :I T0547 131 :VN 1epuA 103 :FT T0547 134 :FKD 1epuA 106 :ACP Number of specific fragments extracted= 3 number of extra gaps= 3 total=87127 # 1v8bA.128.47 read from T0547.t06.many.frag # found chain 1v8bA in template set Warning: unaligning (T0547)P128 (1v8bA)K48 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1v8bA)T56 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1v8bA 49 :ITGCLHM Number of specific fragments extracted= 1 number of extra gaps= 2 total=87128 # 1kqfA.128.224 read from T0547.t06.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)P128 (1kqfA)V225 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N132 (1kqfA)M229 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITV 1kqfA 226 :VMV T0547 133 :GFKD 1kqfA 230 :GGNA Number of specific fragments extracted= 2 number of extra gaps= 2 total=87130 # 1hdoA.128.4 read from T0547.t06.many.frag # found chain 1hdoA in training set Warning: unaligning (T0547)P128 (1hdoA)K5 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVNGFKD 1hdoA 6 :IAIFGATG Number of specific fragments extracted= 1 number of extra gaps= 1 total=87131 # 1yacA.129.107 read from T0547.t06.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)N132 (1yacA)A111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE in next template residue (1yacA)V114 Warning: unaligning (T0547)K135 because of BadResidue code BAD_PEPTIDE at template residue (1yacA)V114 T0547 129 :ITV 1yacA 108 :LII T0547 133 :G 1yacA 112 :G T0547 136 :DR 1yacA 115 :TE Number of specific fragments extracted= 3 number of extra gaps= 2 total=87134 # 1km4A.129.94 read from T0547.t06.many.frag # found chain 1km4A in template set T0547 129 :ITVNGFKDR 1km4A 95 :IIVHGFPGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87135 # 1yzyA.129.248 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)N132 (1yzyA)S251 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITV 1yzyA 248 :VVL T0547 133 :GFKDR 1yzyA 252 :GSCSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=87137 # 1uslA.129.72 read from T0547.t06.many.frag # found chain 1uslA in template set Warning: unaligning (T0547)D136 (1uslA)G72 because T (delta_L) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1uslA 65 :GIVLGGS T0547 137 :R 1uslA 73 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=87139 # 1p3dA.129.44 read from T0547.t06.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)G133 (1p3dA)D49 because E (beta_S) conformation "forbidden" or filtered. T0547 129 :ITVN 1p3dA 45 :ISGS T0547 134 :FKDR 1p3dA 50 :IADG Number of specific fragments extracted= 2 number of extra gaps= 1 total=87141 # 1thfD.129.77 read from T0547.t06.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)D136 (1thfD)D85 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1thfD 78 :TVGGGIH T0547 137 :R 1thfD 86 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=87143 # 1fyeA.129.82 read from T0547.t06.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)F134 (1fyeA)G88 because S (epsilon) conformation "forbidden" or filtered. T0547 129 :ITVNG 1fyeA 83 :IIVGG T0547 135 :KDR 1fyeA 89 :NTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=87145 # 1u0fA.129.180 read from T0547.t06.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)G133 (1u0fA)S184 because G (3-10) conformation "forbidden" or filtered. T0547 129 :ITVN 1u0fA 180 :VWFV T0547 134 :FKDR 1u0fA 185 :NIDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=87147 # 1ct5A.129.86 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 129 :ITVNGFKDR 1ct5A 88 :WHFIGGLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87148 # 1knwA.129.97 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N132 (1knwA)A101 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITV 1knwA 98 :VFT T0547 133 :GFKDR 1knwA 102 :DVIDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=87150 # 1v2xA.129.24 read from T0547.t06.many.frag # found chain 1v2xA in training set T0547 129 :ITVNGFKDR 1v2xA 25 :VLLENVHKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=87151 # 1rkxA.129.11 read from T0547.t06.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)D136 (1rkxA)G19 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1rkxA 12 :VFVTGHT T0547 137 :R 1rkxA 20 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=87153 # 2fnuA.129.76 read from T0547.t06.many.frag # found chain 2fnuA in training set Warning: unaligning (T0547)K135 (2fnuA)S83 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITVNGF 2fnuA 77 :IITTPI T0547 136 :DR 2fnuA 84 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=87155 # 1vp4A.129.135 read from T0547.t06.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vp4A)D128 Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vp4A)D128 Warning: unaligning (T0547)F134 (1vp4A)P129 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1vp4A)Y131 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITV 1vp4A 124 :CVL T0547 135 :K 1vp4A 130 :A T0547 137 :R 1vp4A 132 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=87158 # 2f46A.129.23 read from T0547.t06.many.frag # found chain 2f46A in training set Warning: unaligning (T0547)N132 (2f46A)S26 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITV 2f46A 23 :LYI T0547 133 :GFKDR 2f46A 27 :PQLTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=87160 # 1w5qA.129.82 read from T0547.t06.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)G133 (1w5qA)P87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1w5qA)P90 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVN 1w5qA 83 :LALF T0547 134 :FK 1w5qA 88 :VT T0547 137 :R 1w5qA 91 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=87163 # 1e5kA.129.49 read from T0547.t06.many.frag # found chain 1e5kA in training set Warning: unaligning (T0547)G133 (1e5kA)A54 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1e5kA)R56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1e5kA)H57 because L (left) conformation "forbidden" or filtered. T0547 129 :ITVN 1e5kA 50 :VVVN T0547 134 :F 1e5kA 55 :N T0547 137 :R 1e5kA 58 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=87166 # 1tvlA.129.214 read from T0547.t06.many.frag # found chain 1tvlA in template set Warning: unaligning (T0547)G133 (1tvlA)A217 because G (3-10) conformation "forbidden" or filtered. T0547 129 :ITVN 1tvlA 213 :VVFQ T0547 134 :FKDR 1tvlA 218 :GSSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=87168 # 1ajsA.129.132 read from T0547.t06.many.frag # found chain 1ajsA in training set Warning: unaligning (T0547)N132 (1ajsA)S136 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1ajsA)P138 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1ajsA)T139 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITV 1ajsA 133 :VYV T0547 133 :G 1ajsA 137 :S T0547 136 :DR 1ajsA 140 :WE Number of specific fragments extracted= 3 number of extra gaps= 2 total=87171 # 1y1pA.129.13 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)K135 (1y1pA)N21 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1y1pA)G22 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1y1pA 15 :VLVTGA T0547 137 :R 1y1pA 23 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=87173 # 1jqnA.129.471 read from T0547.t06.many.frag # found chain 1jqnA in template set T0547 129 :ITVNGFKDR 1jqnA 472 :YVISMAKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=87174 # 1v58A.129.131 read from T0547.t06.many.frag # found chain 1v58A in training set T0547 129 :ITVNGFKDR 1v58A 132 :TLLVGVIKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=87175 # 1qwgA.129.16 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)K135 (1qwgA)L23 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVNGF 1qwgA 17 :VVLDKG T0547 136 :DR 1qwgA 24 :PP Number of specific fragments extracted= 2 number of extra gaps= 1 total=87177 # 1t2dA.129.30 read from T0547.t06.many.frag # found chain 1t2dA in training set Warning: unaligning (T0547)G133 (1t2dA)D34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1t2dA)V36 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVN 1t2dA 30 :VVLF T0547 134 :F 1t2dA 35 :I T0547 136 :DR 1t2dA 37 :KN Number of specific fragments extracted= 3 number of extra gaps= 2 total=87180 # 1iirA.129.2 read from T0547.t06.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)D136 (1iirA)S10 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1iirA 3 :VLLATCG T0547 137 :R 1iirA 11 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=87182 # 2b20A.129.231 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2b20A)A234 Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2b20A)A234 Warning: unaligning (T0547)D136 (2b20A)D236 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITVN 2b20A 229 :YVLI T0547 135 :K 2b20A 235 :I T0547 137 :R 2b20A 237 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=87185 # 1v77A.129.55 read from T0547.t06.many.frag # found chain 1v77A in training set Warning: unaligning (T0547)F134 (1v77A)N61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1v77A)P62 because P (beta_P) conformation "forbidden" or filtered. T0547 129 :ITVNG 1v77A 56 :AILLS T0547 136 :DR 1v77A 63 :KP Number of specific fragments extracted= 2 number of extra gaps= 1 total=87187 # 1m5wA.129.68 read from T0547.t06.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)T130 (1m5wA)N70 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1m5wA)M73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1m5wA)V75 because N (gamma') conformation "forbidden" or filtered. T0547 129 :I 1m5wA 69 :M T0547 131 :VN 1m5wA 71 :LE T0547 134 :F 1m5wA 74 :A T0547 136 :DR 1m5wA 76 :TE Number of specific fragments extracted= 4 number of extra gaps= 3 total=87191 # 1qsgA.129.11 read from T0547.t06.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)D136 (1qsgA)S16 because Y (epsilon') conformation "forbidden" or filtered. T0547 129 :ITVNGFK 1qsgA 9 :ILVTGVA T0547 137 :R 1qsgA 17 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=87193 # 1xccA.129.67 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)S72 Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)S72 Warning: unaligning (T0547)F134 (1xccA)C73 because G (3-10) conformation "forbidden" or filtered. T0547 129 :ITV 1xccA 68 :LIG T0547 135 :KDR 1xccA 74 :NSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=87195 # 1yacA.130.108 read from T0547.t06.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)N132 (1yacA)A111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE in next template residue (1yacA)V114 Warning: unaligning (T0547)K135 because of BadResidue code BAD_PEPTIDE at template residue (1yacA)V114 T0547 130 :TV 1yacA 109 :II T0547 133 :G 1yacA 112 :G T0547 136 :DRE 1yacA 115 :TEV Number of specific fragments extracted= 3 number of extra gaps= 2 total=87198 # 1u0fA.130.181 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 130 :TVNGFKDRE 1u0fA 181 :WFVSNIDGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87199 # 1knwA.130.98 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N132 (1knwA)A101 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TV 1knwA 99 :FT T0547 133 :GFKDRE 1knwA 102 :DVIDQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87201 # 1thfD.130.78 read from T0547.t06.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)N132 (1thfD)G81 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1thfD)D85 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TV 1thfD 79 :VG T0547 133 :GFK 1thfD 82 :GIH T0547 137 :RE 1thfD 86 :FE Number of specific fragments extracted= 3 number of extra gaps= 2 total=87204 # 1tg6A.130.85 read from T0547.t06.many.frag # found chain 1tg6A in template set Warning: unaligning (T0547)N132 (1tg6A)M32 because E (beta_S) conformation "forbidden" or filtered. T0547 130 :TV 1tg6A 30 :CV T0547 133 :GFKDRE 1tg6A 33 :GPIDDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=87206 # 1km4A.130.95 read from T0547.t06.many.frag # found chain 1km4A in template set Warning: unaligning (T0547)D136 (1km4A)G102 because S (epsilon) conformation "forbidden" or filtered. T0547 130 :TVNGFK 1km4A 96 :IVHGFP T0547 137 :RE 1km4A 103 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=87208 # 1yzyA.130.249 read from T0547.t06.many.frag # found chain 1yzyA in template set T0547 130 :TVNGFKDRE 1yzyA 249 :VLSGSCSVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=87209 # 1jqnA.130.472 read from T0547.t06.many.frag # found chain 1jqnA in template set T0547 130 :TVNGFKDRE 1jqnA 473 :VISMAKTPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87210 # 2f46A.130.24 read from T0547.t06.many.frag # found chain 2f46A in training set Warning: unaligning (T0547)K135 (2f46A)L29 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TVNGF 2f46A 24 :YISPQ T0547 136 :DRE 2f46A 30 :TKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87212 # 1qwgA.130.17 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)F134 (1qwgA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 130 :TVNG 1qwgA 18 :VLDK T0547 135 :KDRE 1qwgA 23 :LPPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=87214 # 7odcA.130.109 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 130 :TVNGFKDRE 7odcA 110 :YANPCKQVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87215 # 1r6wA.130.190 read from T0547.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0547)D136 (1r6wA)T195 because E (beta_S) conformation "forbidden" or filtered. T0547 130 :TVNGFK 1r6wA 189 :LEEPCK T0547 137 :RE 1r6wA 196 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=87217 # 1v58A.130.132 read from T0547.t06.many.frag # found chain 1v58A in training set T0547 130 :TVNGFKDRE 1v58A 133 :LLVGVIKPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87218 # 1sr9A.130.140 read from T0547.t06.many.frag # found chain 1sr9A in template set T0547 130 :TVNGFKDRE 1sr9A 141 :QVLTQCRPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87219 # 1p3dA.130.45 read from T0547.t06.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)R137 (1p3dA)G53 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TVNGFKD 1p3dA 46 :SGSDIAD T0547 138 :E 1p3dA 54 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=87221 # 1v2xA.130.25 read from T0547.t06.many.frag # found chain 1v2xA in training set T0547 130 :TVNGFKDRE 1v2xA 26 :LLENVHKPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=87222 # 1epuA.130.101 read from T0547.t06.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)T130 (1epuA)F102 because D (zeta) conformation "forbidden" or filtered. T0547 131 :VNGFKDRE 1epuA 103 :FTEACPEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=87223 # 1fyeA.130.83 read from T0547.t06.many.frag # found chain 1fyeA in training set Warning: unaligning (T0547)G133 (1fyeA)G87 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TVN 1fyeA 84 :IVG T0547 134 :FKDRE 1fyeA 88 :GNTFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=87225 # 2a5yB.130.247 read from T0547.t06.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)D136 (2a5yB)Q254 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TVNGFK 2a5yB 248 :VFDDVV T0547 137 :RE 2a5yB 255 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=87227 # 1w5qA.130.83 read from T0547.t06.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)K135 (1w5qA)T89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1w5qA)P90 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TVNGF 1w5qA 84 :ALFPV T0547 137 :RE 1w5qA 91 :VE Number of specific fragments extracted= 2 number of extra gaps= 1 total=87229 # 1xccA.130.68 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)S72 Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)S72 Warning: unaligning (T0547)D136 (1xccA)S75 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TV 1xccA 69 :IG T0547 134 :FK 1xccA 73 :CN T0547 137 :RE 1xccA 76 :KE Number of specific fragments extracted= 3 number of extra gaps= 2 total=87232 # 1ixh.130.53 read from T0547.t06.many.frag # found chain 1ixh in training set T0547 130 :TVNGFKDRE 1ixh 54 :ASDAPLSDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87233 # 1uslA.130.73 read from T0547.t06.many.frag # found chain 1uslA in template set Warning: unaligning (T0547)G133 (1uslA)G69 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1uslA)G72 because T (delta_L) conformation "forbidden" or filtered. T0547 130 :TVN 1uslA 66 :IVL T0547 134 :FK 1uslA 70 :GS T0547 137 :RE 1uslA 73 :NG Number of specific fragments extracted= 3 number of extra gaps= 2 total=87236 # 1ct5A.130.87 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)K135 (1ct5A)L94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1ct5A)Q95 because E (beta_S) conformation "forbidden" or filtered. T0547 130 :TVNGF 1ct5A 89 :HFIGG T0547 137 :RE 1ct5A 96 :TN Number of specific fragments extracted= 2 number of extra gaps= 1 total=87238 # 1v77A.130.56 read from T0547.t06.many.frag # found chain 1v77A in training set Warning: unaligning (T0547)F134 (1v77A)N61 because L (left) conformation "forbidden" or filtered. T0547 130 :TVNG 1v77A 57 :ILLS T0547 135 :KDRE 1v77A 62 :PKPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=87240 # 1zk4A.130.33 read from T0547.t06.many.frag # found chain 1zk4A in training set T0547 130 :TVNGFKDRE 1zk4A 34 :MITGRHSDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87241 # 1ajsA.130.133 read from T0547.t06.many.frag # found chain 1ajsA in training set Warning: unaligning (T0547)G133 (1ajsA)S137 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1ajsA)P138 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1ajsA)T139 because Y (epsilon') conformation "forbidden" or filtered. T0547 130 :TVN 1ajsA 134 :YVS T0547 136 :DRE 1ajsA 140 :WEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=87243 # 2b20A.130.232 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2b20A)A234 Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2b20A)A234 T0547 130 :TVN 2b20A 230 :VLI T0547 135 :KDRE 2b20A 235 :IDTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=87245 # 1m5wA.130.69 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 130 :TVNGFKDRE 1m5wA 70 :NLEMAVTEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87246 # 1vp4A.130.136 read from T0547.t06.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vp4A)D128 Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vp4A)D128 Warning: unaligning (T0547)F134 (1vp4A)P129 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1vp4A)Y131 because P (beta_P) conformation "forbidden" or filtered. T0547 130 :TV 1vp4A 125 :VL T0547 135 :K 1vp4A 130 :A T0547 137 :RE 1vp4A 132 :LG Number of specific fragments extracted= 3 number of extra gaps= 2 total=87249 # 1thfD.131.79 read from T0547.t06.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)K135 (1thfD)H84 because G (3-10) conformation "forbidden" or filtered. T0547 131 :VNGF 1thfD 80 :GGGI T0547 136 :DREL 1thfD 85 :DFET Number of specific fragments extracted= 2 number of extra gaps= 1 total=87251 # 1knwA.131.99 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 131 :VNGFKDREL 1knwA 100 :TADVIDQAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87252 # 1u0fA.131.182 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 131 :VNGFKDREL 1u0fA 182 :FVSNIDGTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=87253 # 1yacA.131.109 read from T0547.t06.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE in next template residue (1yacA)V114 Warning: unaligning (T0547)K135 because of BadResidue code BAD_PEPTIDE at template residue (1yacA)V114 T0547 131 :VNG 1yacA 110 :IAG T0547 136 :DREL 1yacA 115 :TEVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=87255 # 7odcA.131.110 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D136 (7odcA)Q116 because P (beta_P) conformation "forbidden" or filtered. T0547 131 :VNGFK 7odcA 111 :ANPCK T0547 137 :REL 7odcA 117 :VSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=87257 # 1tg6A.131.86 read from T0547.t06.many.frag # found chain 1tg6A in template set T0547 131 :VNGFKDREL 1tg6A 31 :VMGPIDDSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87258 # 1r6wA.131.191 read from T0547.t06.many.frag # found chain 1r6wA in training set T0547 131 :VNGFKDREL 1r6wA 190 :EEPCKTRDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=87259 # 1sr9A.131.141 read from T0547.t06.many.frag # found chain 1sr9A in template set T0547 131 :VNGFKDREL 1sr9A 142 :VLTQCRPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87260 # 2a5yB.131.248 read from T0547.t06.many.frag # found chain 2a5yB in template set T0547 131 :VNGFKDREL 2a5yB 249 :FDDVVQEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=87261 # 1km4A.131.96 read from T0547.t06.many.frag # found chain 1km4A in template set Warning: unaligning (T0547)G133 (1km4A)G99 because G (3-10) conformation "forbidden" or filtered. T0547 131 :VN 1km4A 97 :VH T0547 134 :FKDREL 1km4A 100 :FPGADS Number of specific fragments extracted= 2 number of extra gaps= 1 total=87263 # 1jqnA.131.473 read from T0547.t06.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)D136 (1jqnA)T479 because E (beta_S) conformation "forbidden" or filtered. T0547 131 :VNGFK 1jqnA 474 :ISMAK T0547 137 :REL 1jqnA 480 :PSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=87265 # 1qwgA.131.18 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)F134 (1qwgA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 131 :VNG 1qwgA 19 :LDK T0547 135 :KDREL 1qwgA 23 :LPPKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=87267 # 1fyeA.131.84 read from T0547.t06.many.frag # found chain 1fyeA in training set T0547 131 :VNGFKDREL 1fyeA 85 :VGGGNTFQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87268 # 1m0dA.131.54 read from T0547.t06.many.frag # found chain 1m0dA in template set Warning: unaligning (T0547)K135 (1m0dA)W70 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1m0dA)E71 because P (beta_P) conformation "forbidden" or filtered. T0547 131 :VNGF 1m0dA 66 :TKGL T0547 137 :REL 1m0dA 72 :SDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=87270 # 1epuA.131.102 read from T0547.t06.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)G133 (1epuA)E105 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1epuA)C107 because P (beta_P) conformation "forbidden" or filtered. T0547 131 :VN 1epuA 103 :FT T0547 134 :F 1epuA 106 :A T0547 136 :DREL 1epuA 108 :PEEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=87273 # 1yzyA.131.250 read from T0547.t06.many.frag # found chain 1yzyA in template set T0547 131 :VNGFKDREL 1yzyA 250 :LSGSCSVMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87274 # 1ixh.131.54 read from T0547.t06.many.frag # found chain 1ixh in training set Warning: unaligning (T0547)G133 (1ixh)A57 because P (beta_P) conformation "forbidden" or filtered. T0547 131 :VN 1ixh 55 :SD T0547 134 :FKDREL 1ixh 58 :PLSDEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=87276 # 1zjcA.131.33 read from T0547.t06.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)G133 (1zjcA)S33 because E (beta_S) conformation "forbidden" or filtered. T0547 131 :VN 1zjcA 31 :RS T0547 134 :FKDREL 1zjcA 34 :VETLEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=87278 # 2bh1X.131.41 read from T0547.t06.many.frag # found chain 2bh1X in template set Warning: unaligning (T0547)G133 (2bh1X)A44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (2bh1X)P45 because C (cis) conformation "forbidden" or filtered. T0547 131 :VN 2bh1X 42 :YL T0547 135 :KDREL 2bh1X 46 :LSMEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87280 # 1m5wA.131.70 read from T0547.t06.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)D136 (1m5wA)T76 because E (beta_S) conformation "forbidden" or filtered. T0547 131 :VNGFK 1m5wA 71 :LEMAV T0547 137 :REL 1m5wA 77 :EEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=87282 # 1rcqA.131.77 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 131 :VNGFKDREL 1rcqA 78 :LEGFFEASE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87283 # 1xccA.131.69 read from T0547.t06.many.frag # found chain 1xccA in template set Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE in next template residue (1xccA)S72 Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE at template residue (1xccA)S72 T0547 131 :V 1xccA 70 :G T0547 134 :FKDREL 1xccA 73 :CNSKES Number of specific fragments extracted= 2 number of extra gaps= 1 total=87285 # 1wbhA.131.92 read from T0547.t06.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)K135 (1wbhA)L96 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1wbhA)T97 because E (beta_S) conformation "forbidden" or filtered. T0547 131 :VNGF 1wbhA 92 :ISPG T0547 137 :REL 1wbhA 98 :EPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=87287 # 2b20A.131.233 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)N132 (2b20A)I232 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2b20A)A234 Warning: unaligning (T0547)F134 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2b20A)A234 T0547 131 :V 2b20A 231 :L T0547 135 :KDREL 2b20A 235 :IDTTH Number of specific fragments extracted= 2 number of extra gaps= 1 total=87289 # 1m1nA.131.251 read from T0547.t06.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)V131 because of BadResidue code BAD_PEPTIDE in next template residue (1m1nA)S254 Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (1m1nA)S254 Warning: unaligning (T0547)F134 (1m1nA)D256 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1m1nA)S258 because E (beta_S) conformation "forbidden" or filtered. T0547 133 :G 1m1nA 255 :G T0547 135 :K 1m1nA 257 :G T0547 137 :REL 1m1nA 259 :ISE Number of specific fragments extracted= 3 number of extra gaps= 3 total=87292 # 2f46A.131.25 read from T0547.t06.many.frag # found chain 2f46A in training set T0547 131 :VNGFKDREL 2f46A 25 :ISPQLTKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=87293 # 1tvlA.131.216 read from T0547.t06.many.frag # found chain 1tvlA in template set Warning: unaligning (T0547)G133 (1tvlA)A217 because G (3-10) conformation "forbidden" or filtered. T0547 131 :VN 1tvlA 215 :FQ T0547 134 :FKDREL 1tvlA 218 :GSSETG Number of specific fragments extracted= 2 number of extra gaps= 1 total=87295 # 1v2xA.131.26 read from T0547.t06.many.frag # found chain 1v2xA in training set T0547 131 :VNGFKDREL 1v2xA 27 :LENVHKPHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=87296 # 2bmaA.131.116 read from T0547.t06.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)N132 (2bmaA)H95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (2bmaA)N99 because Y (epsilon') conformation "forbidden" or filtered. T0547 131 :V 2bmaA 94 :F T0547 133 :GFK 2bmaA 96 :PSV T0547 137 :REL 2bmaA 100 :LSI Number of specific fragments extracted= 3 number of extra gaps= 2 total=87299 # 1v77A.131.57 read from T0547.t06.many.frag # found chain 1v77A in training set Warning: unaligning (T0547)N132 (1v77A)L59 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1v77A)N61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1v77A)P62 because P (beta_P) conformation "forbidden" or filtered. T0547 131 :V 1v77A 58 :L T0547 133 :G 1v77A 60 :S T0547 136 :DREL 1v77A 63 :KPSL Number of specific fragments extracted= 3 number of extra gaps= 2 total=87302 # 1knwA.132.100 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N132 (1knwA)A101 because Y (epsilon') conformation "forbidden" or filtered. T0547 133 :GFKDRELI 1knwA 102 :DVIDQATL Number of specific fragments extracted= 1 number of extra gaps= 1 total=87303 # 1u0fA.132.183 read from T0547.t06.many.frag # found chain 1u0fA in template set Warning: unaligning (T0547)G133 (1u0fA)S184 because G (3-10) conformation "forbidden" or filtered. T0547 132 :N 1u0fA 183 :V T0547 134 :FKDRELI 1u0fA 185 :NIDGTHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=87305 # 1m0dA.132.55 read from T0547.t06.many.frag # found chain 1m0dA in template set Warning: unaligning (T0547)N132 (1m0dA)K67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1m0dA)E71 because P (beta_P) conformation "forbidden" or filtered. T0547 133 :GFK 1m0dA 68 :GLW T0547 137 :RELI 1m0dA 72 :SDDR Number of specific fragments extracted= 2 number of extra gaps= 2 total=87307 # 1epuA.132.103 read from T0547.t06.many.frag # found chain 1epuA in template set T0547 132 :NGFKDRELI 1epuA 104 :TEACPEELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=87308 # 7odcA.132.111 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 132 :NGFKDRELI 7odcA 112 :NPCKQVSQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87309 # 1m15A.132.136 read from T0547.t06.many.frag # found chain 1m15A in training set T0547 132 :NGFKDRELI 1m15A 137 :NPCLTAEQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=87310 # 2b1eA.132.111 read from T0547.t06.many.frag # found chain 2b1eA in template set Warning: unaligning (T0547)G133 (2b1eA)P172 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :N 2b1eA 171 :F T0547 134 :FKDRELI 2b1eA 173 :YYEDQQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=87312 # 2a5yB.132.249 read from T0547.t06.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)N132 (2a5yB)D250 because P (beta_P) conformation "forbidden" or filtered. T0547 133 :GFKDRELI 2a5yB 251 :DVVQEETI Number of specific fragments extracted= 1 number of extra gaps= 1 total=87313 # 1thfD.132.80 read from T0547.t06.many.frag # found chain 1thfD in training set T0547 132 :NGFKDRELI 1thfD 81 :GGIHDFETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87314 # 1m5wA.132.71 read from T0547.t06.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)N132 (1m5wA)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1m5wA)M73 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :FKDRELI 1m5wA 74 :AVTEEML Number of specific fragments extracted= 1 number of extra gaps= 1 total=87315 # 1qwgA.132.19 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)G133 (1qwgA)K21 because G (3-10) conformation "forbidden" or filtered. T0547 132 :N 1qwgA 20 :D T0547 134 :FKDRELI 1qwgA 22 :GLPPKFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=87317 # 1sfsA.132.34 read from T0547.t06.many.frag # found chain 1sfsA in training set Warning: unaligning (T0547)G133 (1sfsA)Q12 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :N 1sfsA 11 :A T0547 134 :FKDRELI 1sfsA 13 :VVTDQLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=87319 # 2bh1X.132.42 read from T0547.t06.many.frag # found chain 2bh1X in template set Warning: unaligning (T0547)G133 (2bh1X)A44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (2bh1X)P45 because C (cis) conformation "forbidden" or filtered. T0547 132 :N 2bh1X 43 :L T0547 135 :KDRELI 2bh1X 46 :LSMEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=87321 # 1r6wA.132.192 read from T0547.t06.many.frag # found chain 1r6wA in training set T0547 132 :NGFKDRELI 1r6wA 191 :EPCKTRDDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87322 # 1wbhA.132.93 read from T0547.t06.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)D136 (1wbhA)T97 because E (beta_S) conformation "forbidden" or filtered. T0547 132 :NGFK 1wbhA 93 :SPGL T0547 137 :RELI 1wbhA 98 :EPLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=87324 # 1sr9A.132.142 read from T0547.t06.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)N132 (1sr9A)L143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G133 (1sr9A)T144 because E (beta_S) conformation "forbidden" or filtered. T0547 134 :FKDRELI 1sr9A 145 :QCRPELI Number of specific fragments extracted= 1 number of extra gaps= 1 total=87325 # 1jqnA.132.474 read from T0547.t06.many.frag # found chain 1jqnA in template set T0547 132 :NGFKDRELI 1jqnA 475 :SMAKTPSDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87326 # 1pg4A.132.162 read from T0547.t06.many.frag # found chain 1pg4A in training set Warning: unaligning (T0547)N132 (1pg4A)F163 because P (beta_P) conformation "forbidden" or filtered. T0547 133 :GFKDRELI 1pg4A 164 :GGFSPEAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=87327 # 1ig0A.132.97 read from T0547.t06.many.frag # found chain 1ig0A in training set Warning: unaligning (T0547)N132 (1ig0A)L98 because T (delta_L) conformation "forbidden" or filtered. T0547 133 :GFKDRELI 1ig0A 99 :DSLSEKVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=87328 # 1m1nA.132.252 read from T0547.t06.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)N132 because of BadResidue code BAD_PEPTIDE at template residue (1m1nA)S254 Warning: unaligning (T0547)F134 (1m1nA)D256 because L (left) conformation "forbidden" or filtered. T0547 133 :G 1m1nA 255 :G T0547 135 :KDRELI 1m1nA 257 :GSISEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=87330 # 1nmoA.132.40 read from T0547.t06.many.frag # found chain 1nmoA in template set Warning: unaligning (T0547)N132 (1nmoA)G41 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1nmoA)S45 because P (beta_P) conformation "forbidden" or filtered. T0547 133 :GFK 1nmoA 42 :VTA T0547 137 :RELI 1nmoA 46 :QALL Number of specific fragments extracted= 2 number of extra gaps= 2 total=87332 1l1sA expands to /projects/compbio/data/pdb/1l1s.pdb.gz 1l1sA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1l1sA.132.9 read from T0547.t06.many.frag # adding 1l1sA to template set # found chain 1l1sA in template set T0547 132 :NGFKDRELI 1l1sA 10 :IDEDDESRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87333 # 1vprA.132.114 read from T0547.t06.many.frag # found chain 1vprA in training set Warning: unaligning (T0547)G133 (1vprA)P981 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :N 1vprA 980 :C T0547 134 :FKDRELI 1vprA 982 :QLTKEQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=87335 # 1ixh.132.55 read from T0547.t06.many.frag # found chain 1ixh in training set Warning: unaligning (T0547)G133 (1ixh)A57 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :N 1ixh 56 :D T0547 134 :FKDRELI 1ixh 58 :PLSDEKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=87337 # 1v77A.132.58 read from T0547.t06.many.frag # found chain 1v77A in training set Warning: unaligning (T0547)N132 (1v77A)L59 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F134 (1v77A)N61 because L (left) conformation "forbidden" or filtered. T0547 133 :G 1v77A 60 :S T0547 135 :KDRELI 1v77A 62 :PKPSLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=87339 # 1ekqA.132.65 read from T0547.t06.many.frag # found chain 1ekqA in training set Warning: unaligning (T0547)N132 (1ekqA)I66 because G (3-10) conformation "forbidden" or filtered. T0547 133 :GFKDRELI 1ekqA 67 :GTLSKESV Number of specific fragments extracted= 1 number of extra gaps= 1 total=87340 # 1tg6A.132.87 read from T0547.t06.many.frag # found chain 1tg6A in template set Warning: unaligning (T0547)G133 (1tg6A)G33 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1tg6A)I35 because P (beta_P) conformation "forbidden" or filtered. T0547 132 :N 1tg6A 32 :M T0547 134 :F 1tg6A 34 :P T0547 136 :DRELI 1tg6A 36 :DDSVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=87343 # 1xg0C.132.70 read from T0547.t06.many.frag # found chain 1xg0C in training set Warning: unaligning (T0547)N132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xg0C)C73 Warning: unaligning (T0547)F134 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xg0C)C73 Warning: unaligning (T0547)D136 (1xg0C)T75 because S (epsilon) conformation "forbidden" or filtered. T0547 135 :K 1xg0C 74 :Y T0547 137 :RELI 1xg0C 76 :NRRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=87345 # 1evlA.132.184 read from T0547.t06.many.frag # found chain 1evlA in training set Warning: unaligning (T0547)G133 (1evlA)R427 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1evlA)G429 because S (epsilon) conformation "forbidden" or filtered. T0547 132 :N 1evlA 426 :K T0547 134 :F 1evlA 428 :I T0547 136 :DRELI 1evlA 430 :SDEMW Number of specific fragments extracted= 3 number of extra gaps= 2 total=87348 # 2bvlA.132.103 read from T0547.t06.many.frag # found chain 2bvlA in template set Warning: unaligning (T0547)N132 (2bvlA)G104 because T (delta_L) conformation "forbidden" or filtered. T0547 133 :GFKDRELI 2bvlA 105 :GQINDTAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=87349 # 1knwA.133.101 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K135 (1knwA)I104 because E (beta_S) conformation "forbidden" or filtered. T0547 133 :GF 1knwA 102 :DV T0547 136 :DRELIN 1knwA 105 :DQATLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=87351 # 1epuA.133.104 read from T0547.t06.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)G133 (1epuA)E105 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :FKDRELIN 1epuA 106 :ACPEELFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=87352 # 1m0dA.133.56 read from T0547.t06.many.frag # found chain 1m0dA in template set T0547 133 :GFKDRELIN 1m0dA 68 :GLWESDDRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87353 # 1m15A.133.137 read from T0547.t06.many.frag # found chain 1m15A in training set T0547 133 :GFKDRELIN 1m15A 138 :PCLTAEQYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87354 # 7odcA.133.112 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 133 :GFKDRELIN 7odcA 113 :PCKQVSQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87355 # 1u0fA.133.184 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 133 :GFKDRELIN 1u0fA 184 :SNIDGTHIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87356 # 1vprA.133.115 read from T0547.t06.many.frag # found chain 1vprA in training set Warning: unaligning (T0547)D136 (1vprA)T984 because P (beta_P) conformation "forbidden" or filtered. T0547 133 :GFK 1vprA 981 :PQL T0547 137 :RELIN 1vprA 985 :KEQVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87358 # 1thfD.133.81 read from T0547.t06.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)D136 (1thfD)D85 because Y (epsilon') conformation "forbidden" or filtered. T0547 133 :GFK 1thfD 82 :GIH T0547 137 :RELIN 1thfD 86 :FETAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=87360 # 1sfsA.133.35 read from T0547.t06.many.frag # found chain 1sfsA in training set Warning: unaligning (T0547)D136 (1sfsA)T15 because P (beta_P) conformation "forbidden" or filtered. T0547 133 :GFK 1sfsA 12 :QVV T0547 137 :RELIN 1sfsA 16 :DQLFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=87362 # 1l1sA.133.10 read from T0547.t06.many.frag # found chain 1l1sA in template set T0547 133 :GFKDRELIN 1l1sA 11 :DEDDESRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87363 # 1sr9A.133.143 read from T0547.t06.many.frag # found chain 1sr9A in template set T0547 133 :GFKDRELIN 1sr9A 144 :TQCRPELIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87364 # 1u02A.133.21 read from T0547.t06.many.frag # found chain 1u02A in template set Warning: unaligning (T0547)K135 (1u02A)A24 because P (beta_P) conformation "forbidden" or filtered. T0547 133 :GF 1u02A 22 :SY T0547 136 :DRELIN 1u02A 25 :DAGLLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=87366 # 2a5yB.133.250 read from T0547.t06.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)D136 (2a5yB)Q254 because P (beta_P) conformation "forbidden" or filtered. T0547 133 :GFK 2a5yB 251 :DVV T0547 137 :RELIN 2a5yB 255 :EETIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=87368 # 1ofcX.133.91 read from T0547.t06.many.frag # found chain 1ofcX in template set Warning: unaligning (T0547)G133 (1ofcX)E779 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K135 (1ofcX)L781 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1ofcX)T782 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :F 1ofcX 780 :P T0547 137 :RELIN 1ofcX 783 :EEEIQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=87370 # 1vjrA.133.134 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 133 :GFKDRELIN 1vjrA 123 :KTLTYERLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87371 # 1m5wA.133.72 read from T0547.t06.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)K135 (1m5wA)V75 because N (gamma') conformation "forbidden" or filtered. T0547 133 :GF 1m5wA 73 :MA T0547 136 :DRELIN 1m5wA 76 :TEEMLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87373 # 1byrA.133.35 read from T0547.t06.many.frag # found chain 1byrA in template set T0547 133 :GFKDRELIN 1byrA 36 :SFTAPDIMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87374 # 1r6wA.133.193 read from T0547.t06.many.frag # found chain 1r6wA in training set T0547 133 :GFKDRELIN 1r6wA 192 :PCKTRDDSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87375 # 1ig0A.133.98 read from T0547.t06.many.frag # found chain 1ig0A in training set Warning: unaligning (T0547)K135 (1ig0A)L101 because P (beta_P) conformation "forbidden" or filtered. T0547 133 :GF 1ig0A 99 :DS T0547 136 :DRELIN 1ig0A 102 :SEKVYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=87377 # 1m1nA.133.253 read from T0547.t06.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)F134 (1m1nA)D256 because L (left) conformation "forbidden" or filtered. T0547 133 :G 1m1nA 255 :G T0547 135 :KDRELIN 1m1nA 257 :GSISEIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=87379 # 2bh1X.133.43 read from T0547.t06.many.frag # found chain 2bh1X in template set Warning: unaligning (T0547)F134 (2bh1X)P45 because C (cis) conformation "forbidden" or filtered. T0547 133 :G 2bh1X 44 :A T0547 135 :KDRELIN 2bh1X 46 :LSMEALV Number of specific fragments extracted= 2 number of extra gaps= 1 total=87381 1v9mA expands to /projects/compbio/data/pdb/1v9m.pdb.gz 1v9mA:# 1v9mA.133.17 read from T0547.t06.many.frag # adding 1v9mA to template set # found chain 1v9mA in template set Warning: unaligning (T0547)K135 (1v9mA)L20 because P (beta_P) conformation "forbidden" or filtered. T0547 133 :GF 1v9mA 18 :TL T0547 136 :DRELIN 1v9mA 21 :KESFFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=87383 # 1yvhA.133.26 read from T0547.t06.many.frag # found chain 1yvhA in template set Warning: unaligning (T0547)G133 (1yvhA)G49 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :FKDRELIN 1yvhA 50 :TVDKKMVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=87384 # 1yt3A.133.141 read from T0547.t06.many.frag # found chain 1yt3A in training set Warning: unaligning (T0547)F134 (1yt3A)P143 because C (cis) conformation "forbidden" or filtered. T0547 133 :G 1yt3A 142 :R T0547 135 :KDRELIN 1yt3A 144 :LTERQCE Number of specific fragments extracted= 2 number of extra gaps= 1 total=87386 # 1vlpA.133.89 read from T0547.t06.many.frag # found chain 1vlpA in training set T0547 133 :GFKDRELIN 1vlpA 78 :PYLPSAYIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87387 1vjnA expands to /projects/compbio/data/pdb/1vjn.pdb.gz 1vjnA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vjnA.133.125 read from T0547.t06.many.frag # adding 1vjnA to template set # found chain 1vjnA in template set T0547 133 :GFKDRELIN 1vjnA 114 :HVLTPAQVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87388 # 1qwgA.133.20 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)F134 (1qwgA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 133 :G 1qwgA 21 :K T0547 135 :KDRELIN 1qwgA 23 :LPPKFVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=87390 # 1nmoA.133.41 read from T0547.t06.many.frag # found chain 1nmoA in template set T0547 133 :GFKDRELIN 1nmoA 42 :VTASQALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=87391 # 1lshA.133.385 read from T0547.t06.many.frag # found chain 1lshA in template set T0547 133 :GFKDRELIN 1lshA 402 :QQATRESLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87392 # 1wbhA.133.94 read from T0547.t06.many.frag # found chain 1wbhA in training set T0547 133 :GFKDRELIN 1wbhA 94 :PGLTEPLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87393 # 1knwA.134.102 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 134 :FKDRELINI 1knwA 103 :VIDQATLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=87394 # 1m5wA.134.73 read from T0547.t06.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)D136 (1m5wA)T76 because E (beta_S) conformation "forbidden" or filtered. T0547 134 :FK 1m5wA 74 :AV T0547 137 :RELINI 1m5wA 77 :EEMLAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=87396 # 1m0dA.134.57 read from T0547.t06.many.frag # found chain 1m0dA in template set T0547 134 :FKDRELINI 1m0dA 69 :LWESDDRKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87397 # 1epuA.134.105 read from T0547.t06.many.frag # found chain 1epuA in template set T0547 134 :FKDRELINI 1epuA 106 :ACPEELFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87398 # 1byrA.134.36 read from T0547.t06.many.frag # found chain 1byrA in template set Warning: unaligning (T0547)K135 (1byrA)T38 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1byrA)A39 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :F 1byrA 37 :F T0547 137 :RELINI 1byrA 40 :PDIMKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87400 # 7odcA.134.113 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 134 :FKDRELINI 7odcA 114 :CKQVSQIKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=87401 # 1u0fA.134.185 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 134 :FKDRELINI 1u0fA 185 :NIDGTHIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87402 # 1u02A.134.22 read from T0547.t06.many.frag # found chain 1u02A in template set T0547 134 :FKDRELINI 1u02A 23 :YADAGLLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87403 # 1sfsA.134.36 read from T0547.t06.many.frag # found chain 1sfsA in training set T0547 134 :FKDRELINI 1sfsA 13 :VVTDQLFQC Number of specific fragments extracted= 1 number of extra gaps= 0 total=87404 # 1sr9A.134.144 read from T0547.t06.many.frag # found chain 1sr9A in template set T0547 134 :FKDRELINI 1sr9A 145 :QCRPELIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=87405 # 1m15A.134.138 read from T0547.t06.many.frag # found chain 1m15A in training set T0547 134 :FKDRELINI 1m15A 139 :CLTAEQYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87406 # 1vjnA.134.126 read from T0547.t06.many.frag # found chain 1vjnA in template set T0547 134 :FKDRELINI 1vjnA 115 :VLTPAQVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87407 # 1vprA.134.116 read from T0547.t06.many.frag # found chain 1vprA in training set Warning: unaligning (T0547)K135 (1vprA)L983 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1vprA)T984 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :F 1vprA 982 :Q T0547 137 :RELINI 1vprA 985 :KEQVAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=87409 # 1vjrA.134.135 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)D136 (1vjrA)T126 because E (beta_S) conformation "forbidden" or filtered. T0547 134 :FK 1vjrA 124 :TL T0547 137 :RELINI 1vjrA 127 :YERLKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=87411 # 1l1sA.134.11 read from T0547.t06.many.frag # found chain 1l1sA in template set T0547 134 :FKDRELINI 1l1sA 12 :EDDESRVLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87412 # 1zwxA.134.54 read from T0547.t06.many.frag # found chain 1zwxA in template set T0547 134 :FKDRELINI 1zwxA 89 :AFDTSASHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87413 # 1v9mA.134.18 read from T0547.t06.many.frag # found chain 1v9mA in template set T0547 134 :FKDRELINI 1v9mA 19 :LLKESFFQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87414 # 1dd9A.134.192 read from T0547.t06.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)F134 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dd9A)S288 Warning: unaligning (T0547)K135 (1dd9A)T289 because N (gamma') conformation "forbidden" or filtered. T0547 136 :DRELINI 1dd9A 290 :TADHIQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87415 # 1thfD.134.82 read from T0547.t06.many.frag # found chain 1thfD in training set T0547 134 :FKDRELINI 1thfD 83 :IHDFETASE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87416 # 1lshA.134.386 read from T0547.t06.many.frag # found chain 1lshA in template set Warning: unaligning (T0547)K135 (1lshA)A404 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :F 1lshA 403 :Q T0547 136 :DRELINI 1lshA 405 :TRESLSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=87418 # 1ig0A.134.99 read from T0547.t06.many.frag # found chain 1ig0A in training set T0547 134 :FKDRELINI 1ig0A 100 :SLSEKVYKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=87419 # 1nofA.134.27 read from T0547.t06.many.frag # found chain 1nofA in training set T0547 134 :FKDRELINI 1nofA 58 :DLTTEQINT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87420 # 1wbhA.134.95 read from T0547.t06.many.frag # found chain 1wbhA in training set T0547 134 :FKDRELINI 1wbhA 95 :GLTEPLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87421 # 1vlpA.134.90 read from T0547.t06.many.frag # found chain 1vlpA in training set T0547 134 :FKDRELINI 1vlpA 79 :YLPSAYIKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=87422 # 2ajtA.134.17 read from T0547.t06.many.frag # found chain 2ajtA in template set T0547 134 :FKDRELINI 2ajtA 18 :LYGPETLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=87423 # 1ne9A.134.111 read from T0547.t06.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)D136 (1ne9A)S114 because Y (epsilon') conformation "forbidden" or filtered. T0547 134 :FK 1ne9A 112 :AY T0547 137 :RELINI 1ne9A 115 :DEFNTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=87425 # 1yt3A.134.142 read from T0547.t06.many.frag # found chain 1yt3A in training set Warning: unaligning (T0547)F134 (1yt3A)P143 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1yt3A)T145 because P (beta_P) conformation "forbidden" or filtered. T0547 135 :K 1yt3A 144 :L T0547 137 :RELINI 1yt3A 146 :ERQCEY Number of specific fragments extracted= 2 number of extra gaps= 2 total=87427 # 2ar0A.134.151 read from T0547.t06.many.frag # found chain 2ar0A in template set T0547 134 :FKDRELINI 2ar0A 152 :FTPRPLIKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87428 # 2f6uA.134.19 read from T0547.t06.many.frag # found chain 2f6uA in training set Warning: unaligning (T0547)D136 (2f6uA)T1019 because P (beta_P) conformation "forbidden" or filtered. T0547 134 :FK 2f6uA 1017 :TN T0547 137 :RELINI 2f6uA 1020 :DEIIKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87430 # 1ezwA.134.176 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 134 :FKDRELINI 1ezwA 177 :AQGPIMLKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87431 # 1knwA.135.103 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 135 :KDRELINIG 1knwA 104 :IDQATLERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87432 # 1m0dA.135.58 read from T0547.t06.many.frag # found chain 1m0dA in template set T0547 135 :KDRELINIG 1m0dA 70 :WESDDRKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=87433 # 7odcA.135.114 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 135 :KDRELINIG 7odcA 115 :KQVSQIKYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87434 # 1byrA.135.37 read from T0547.t06.many.frag # found chain 1byrA in template set T0547 135 :KDRELINIG 1byrA 38 :TAPDIMKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87435 # 2f6uA.135.20 read from T0547.t06.many.frag # found chain 2f6uA in training set T0547 135 :KDRELINIG 2f6uA 1018 :NTDEIIKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87436 # 2ajtA.135.18 read from T0547.t06.many.frag # found chain 2ajtA in template set Warning: unaligning (T0547)D136 (2ajtA)G20 because Y (epsilon') conformation "forbidden" or filtered. T0547 135 :K 2ajtA 19 :Y T0547 137 :RELINIG 2ajtA 21 :PETLRQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=87438 # 1sr9A.135.145 read from T0547.t06.many.frag # found chain 1sr9A in template set T0547 135 :KDRELINIG 1sr9A 146 :CRPELIERT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87439 # 1m5wA.135.74 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 135 :KDRELINIG 1m5wA 75 :VTEEMLAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87440 # 1nofA.135.28 read from T0547.t06.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)K135 (1nofA)L59 because P (beta_P) conformation "forbidden" or filtered. T0547 136 :DRELINIG 1nofA 60 :TTEQINTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=87441 # 1vjrA.135.136 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)K135 (1vjrA)L125 because P (beta_P) conformation "forbidden" or filtered. T0547 136 :DRELINIG 1vjrA 126 :TYERLKKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=87442 # 1rcqA.135.81 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 135 :KDRELINIG 1rcqA 82 :FEASELELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87443 # 1wbhA.135.96 read from T0547.t06.many.frag # found chain 1wbhA in training set T0547 135 :KDRELINIG 1wbhA 96 :LTEPLLKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87444 # 1lshA.135.387 read from T0547.t06.many.frag # found chain 1lshA in template set Warning: unaligning (T0547)D136 (1lshA)T405 because Y (epsilon') conformation "forbidden" or filtered. T0547 135 :K 1lshA 404 :A T0547 137 :RELINIG 1lshA 406 :RESLSYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87446 # 1u02A.135.23 read from T0547.t06.many.frag # found chain 1u02A in template set T0547 135 :KDRELINIG 1u02A 24 :ADAGLLSLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87447 # 1v9mA.135.19 read from T0547.t06.many.frag # found chain 1v9mA in template set Warning: unaligning (T0547)K135 (1v9mA)L20 because P (beta_P) conformation "forbidden" or filtered. T0547 136 :DRELINIG 1v9mA 21 :KESFFQEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=87448 # 1ne9A.135.112 read from T0547.t06.many.frag # found chain 1ne9A in training set Warning: unaligning (T0547)K135 (1ne9A)Y113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1ne9A)S114 because Y (epsilon') conformation "forbidden" or filtered. T0547 137 :RELINIG 1ne9A 115 :DEFNTTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=87449 # 1sfsA.135.37 read from T0547.t06.many.frag # found chain 1sfsA in training set T0547 135 :KDRELINIG 1sfsA 14 :VTDQLFQCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87450 # 1epuA.135.106 read from T0547.t06.many.frag # found chain 1epuA in template set T0547 135 :KDRELINIG 1epuA 107 :CPEELFKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87451 # 1zhaA.135.105 read from T0547.t06.many.frag # found chain 1zhaA in template set T0547 135 :KDRELINIG 1zhaA 1106 :GQTDLLLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87452 # 1dd9A.135.193 read from T0547.t06.many.frag # found chain 1dd9A in training set T0547 135 :KDRELINIG 1dd9A 289 :TTADHIQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87453 # 1g61A.135.31 read from T0547.t06.many.frag # found chain 1g61A in training set T0547 135 :KDRELINIG 1g61A 2032 :LDKDDVNEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87454 # 1twdA.135.37 read from T0547.t06.many.frag # found chain 1twdA in training set T0547 135 :KDRELINIG 1twdA 38 :PSLGVLKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87455 # 1ig0A.135.100 read from T0547.t06.many.frag # found chain 1ig0A in training set Warning: unaligning (T0547)D136 (1ig0A)S102 because P (beta_P) conformation "forbidden" or filtered. T0547 135 :K 1ig0A 101 :L T0547 137 :RELINIG 1ig0A 103 :EKVYKYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=87457 # 1gvfA.135.84 read from T0547.t06.many.frag # found chain 1gvfA in training set Warning: unaligning (T0547)K135 (1gvfA)E85 because G (3-10) conformation "forbidden" or filtered. T0547 136 :DRELINIG 1gvfA 86 :SLDDIRRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=87458 # 1l1sA.135.12 read from T0547.t06.many.frag # found chain 1l1sA in template set T0547 135 :KDRELINIG 1l1sA 13 :DDESRVLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87459 # 1ezwA.135.177 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 135 :KDRELINIG 1ezwA 178 :QGPIMLKTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87460 # 1vkfA.135.70 read from T0547.t06.many.frag # found chain 1vkfA in training set Warning: unaligning (T0547)K135 (1vkfA)E59 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D136 (1vkfA)G60 because S (epsilon) conformation "forbidden" or filtered. T0547 137 :RELINIG 1vkfA 61 :EEAILFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=87461 # 2a5yB.135.252 read from T0547.t06.many.frag # found chain 2a5yB in template set Warning: unaligning (T0547)D136 (2a5yB)Q254 because P (beta_P) conformation "forbidden" or filtered. T0547 135 :K 2a5yB 253 :V T0547 137 :RELINIG 2a5yB 255 :EETIRWA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87463 # 1nmoA.135.43 read from T0547.t06.many.frag # found chain 1nmoA in template set T0547 135 :KDRELINIG 1nmoA 44 :ASQALLDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87464 # 1mf7A.135.17 read from T0547.t06.many.frag # found chain 1mf7A in training set T0547 135 :KDRELINIG 1mf7A 145 :IIPHDFRRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=87465 # 1byrA.136.38 read from T0547.t06.many.frag # found chain 1byrA in template set T0547 136 :DRELINIGF 1byrA 39 :APDIMKALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87466 # 1nofA.136.29 read from T0547.t06.many.frag # found chain 1nofA in training set T0547 136 :DRELINIGF 1nofA 60 :TTEQINTAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=87467 # 1sr9A.136.146 read from T0547.t06.many.frag # found chain 1sr9A in template set T0547 136 :DRELINIGF 1sr9A 147 :RPELIERTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=87468 # 1rcqA.136.82 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 136 :DRELINIGF 1rcqA 83 :EASELELIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87469 # 1wbhA.136.97 read from T0547.t06.many.frag # found chain 1wbhA in training set T0547 136 :DRELINIGF 1wbhA 97 :TEPLLKAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87470 # 1knwA.136.104 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 136 :DRELINIGF 1knwA 105 :DQATLERVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87471 # 2f6uA.136.21 read from T0547.t06.many.frag # found chain 2f6uA in training set Warning: unaligning (T0547)D136 (2f6uA)T1019 because P (beta_P) conformation "forbidden" or filtered. T0547 137 :RELINIGF 2f6uA 1020 :DEIIKAVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=87472 # 1u02A.136.24 read from T0547.t06.many.frag # found chain 1u02A in template set T0547 136 :DRELINIGF 1u02A 25 :DAGLLSLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87473 # 1lshA.136.388 read from T0547.t06.many.frag # found chain 1lshA in template set Warning: unaligning (T0547)D136 (1lshA)T405 because Y (epsilon') conformation "forbidden" or filtered. T0547 137 :RELINIGF 1lshA 406 :RESLSYAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=87474 # 7odcA.136.115 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 136 :DRELINIGF 7odcA 116 :QVSQIKYAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87475 # 1q5xA.136.74 read from T0547.t06.many.frag # found chain 1q5xA in template set T0547 136 :DRELINIGF 1q5xA 75 :DAELARLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87476 # 1vkyA.136.238 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 136 :DRELINIGF 1vkyA 227 :PKETVRKLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87477 # 2ajtA.136.19 read from T0547.t06.many.frag # found chain 2ajtA in template set Warning: unaligning (T0547)D136 (2ajtA)G20 because Y (epsilon') conformation "forbidden" or filtered. T0547 137 :RELINIGF 2ajtA 21 :PETLRQVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=87478 # 1v9mA.136.20 read from T0547.t06.many.frag # found chain 1v9mA in template set T0547 136 :DRELINIGF 1v9mA 21 :KESFFQEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87479 # 1dd9A.136.194 read from T0547.t06.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)F144 (1dd9A)F298 because G (3-10) conformation "forbidden" or filtered. T0547 136 :DRELINIG 1dd9A 290 :TADHIQLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=87480 # 2a5yB.136.253 read from T0547.t06.many.frag # found chain 2a5yB in template set T0547 136 :DRELINIGF 2a5yB 254 :QEETIRWAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=87481 # 1nmoA.136.44 read from T0547.t06.many.frag # found chain 1nmoA in template set T0547 136 :DRELINIGF 1nmoA 45 :SQALLDEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87482 # 1m5wA.136.75 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 136 :DRELINIGF 1m5wA 76 :TEEMLAIAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87483 # 1ezwA.136.178 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 136 :DRELINIGF 1ezwA 179 :GPIMLKTAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87484 # 1h1nA.136.32 read from T0547.t06.many.frag # found chain 1h1nA in training set T0547 136 :DRELINIGF 1h1nA 33 :DPNTIDTLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87485 # 1gvfA.136.85 read from T0547.t06.many.frag # found chain 1gvfA in training set T0547 136 :DRELINIGF 1gvfA 86 :SLDDIRRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87486 2aamA expands to /projects/compbio/data/pdb/2aam.pdb.gz 2aamA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 881, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 883, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 885, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 887, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 889, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 1234, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 1236, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 1238, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 1240, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 1242, because occupancy 0.500 <= existing 0.500 in 2aamA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1758, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 1760, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 1762, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 1764, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 1795, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 1797, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 2012, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 2014, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 2016, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 2018, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 2066, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 2068, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 2168, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 2170, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 2172, because occupancy 0.500 <= existing 0.500 in 2aamA Skipped atom 2174, because occupancy 0.500 <= existing 0.500 in 2aamA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2305, because occupancy 0.500 <= existing 0.500 in 2aamA # 2aamA.136.57 read from T0547.t06.many.frag # adding 2aamA to template set # found chain 2aamA in template set T0547 136 :DRELINIGF 2aamA 72 :SPEEIKIMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87487 # 1zhaA.136.106 read from T0547.t06.many.frag # found chain 1zhaA in template set T0547 136 :DRELINIGF 1zhaA 1107 :QTDLLLAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87488 # 1vjrA.136.137 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 136 :DRELINIGF 1vjrA 126 :TYERLKKAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=87489 # 1m0dA.136.59 read from T0547.t06.many.frag # found chain 1m0dA in template set T0547 136 :DRELINIGF 1m0dA 71 :ESDDRKKHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87490 # 1vkfA.136.71 read from T0547.t06.many.frag # found chain 1vkfA in training set T0547 136 :DRELINIGF 1vkfA 60 :GEEAILFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87491 # 2ar0A.136.153 read from T0547.t06.many.frag # found chain 2ar0A in template set Warning: unaligning (T0547)D136 (2ar0A)P154 because P (beta_P) conformation "forbidden" or filtered. T0547 137 :RELINIGF 2ar0A 155 :RPLIKTII Number of specific fragments extracted= 1 number of extra gaps= 1 total=87492 # 1dekA.136.177 read from T0547.t06.many.frag # found chain 1dekA in template set T0547 136 :DRELINIGF 1dekA 178 :QDHEMDAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87493 # 1onrA.136.134 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 136 :DRELINIGF 1onrA 136 :TWQGIRAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87494 # 1yxyA.136.89 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 136 :DRELINIGF 1yxyA 90 :TMTEVDQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87495 # 1sr9A.137.147 read from T0547.t06.many.frag # found chain 1sr9A in template set T0547 137 :RELINIGFI 1sr9A 148 :PELIERTFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=87496 # 1vkyA.137.239 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 137 :RELINIGFI 1vkyA 228 :KETVRKLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87497 # 1byrA.137.39 read from T0547.t06.many.frag # found chain 1byrA in template set T0547 137 :RELINIGFI 1byrA 40 :PDIMKALVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87498 # 1vjrA.137.138 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 137 :RELINIGFI 1vjrA 127 :YERLKKACI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87499 # 1onrA.137.135 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 137 :RELINIGFI 1onrA 137 :WQGIRAAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=87500 # 1m0dA.137.60 read from T0547.t06.many.frag # found chain 1m0dA in template set T0547 137 :RELINIGFI 1m0dA 72 :SDDRKKHLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87501 # 7odcA.137.116 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 137 :RELINIGFI 7odcA 117 :VSQIKYAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87502 # 1gvfA.137.86 read from T0547.t06.many.frag # found chain 1gvfA in training set T0547 137 :RELINIGFI 1gvfA 87 :LDDIRRKVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=87503 # 1rcqA.137.83 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 137 :RELINIGFI 1rcqA 84 :ASELELIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87504 # 1vkfA.137.72 read from T0547.t06.many.frag # found chain 1vkfA in training set T0547 137 :RELINIGFI 1vkfA 61 :EEAILFVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87505 # 1lw7A.137.15 read from T0547.t06.many.frag # found chain 1lw7A in template set T0547 137 :RELINIGFI 1lw7A 72 :TGHINMIYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87506 # 2a5yB.137.254 read from T0547.t06.many.frag # found chain 2a5yB in template set T0547 137 :RELINIGFI 2a5yB 255 :EETIRWAQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87507 # 1h1nA.137.33 read from T0547.t06.many.frag # found chain 1h1nA in training set T0547 137 :RELINIGFI 1h1nA 34 :PNTIDTLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87508 # 2ar0A.137.154 read from T0547.t06.many.frag # found chain 2ar0A in template set T0547 137 :RELINIGFI 2ar0A 155 :RPLIKTIIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=87509 # 1knwA.137.105 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 137 :RELINIGFI 1knwA 106 :QATLERVSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87510 # 1u02A.137.25 read from T0547.t06.many.frag # found chain 1u02A in template set T0547 137 :RELINIGFI 1u02A 26 :AGLLSLISD Number of specific fragments extracted= 1 number of extra gaps= 0 total=87511 # 1q5xA.137.75 read from T0547.t06.many.frag # found chain 1q5xA in template set T0547 137 :RELINIGFI 1q5xA 76 :AELARLAVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=87512 # 1yt3A.137.145 read from T0547.t06.many.frag # found chain 1yt3A in training set T0547 137 :RELINIGFI 1yt3A 146 :ERQCEYAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87513 # 1dd9A.137.195 read from T0547.t06.many.frag # found chain 1dd9A in training set Warning: unaligning (T0547)F144 (1dd9A)F298 because G (3-10) conformation "forbidden" or filtered. T0547 137 :RELINIG 1dd9A 291 :ADHIQLL T0547 145 :I 1dd9A 299 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=87515 # 2aamA.137.58 read from T0547.t06.many.frag # found chain 2aamA in template set T0547 137 :RELINIGFI 2aamA 73 :PEEIKIMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=87516 # 1lshA.137.389 read from T0547.t06.many.frag # found chain 1lshA in template set T0547 137 :RELINIGFI 1lshA 406 :RESLSYARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87517 # 1izcA.137.106 read from T0547.t06.many.frag # found chain 1izcA in training set T0547 137 :RELINIGFI 1izcA 107 :EVSLSTALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=87518 # 1vd6A.137.108 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 137 :RELINIGFI 1vd6A 109 :EEAARRLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87519 # 1nmoA.137.45 read from T0547.t06.many.frag # found chain 1nmoA in template set T0547 137 :RELINIGFI 1nmoA 46 :QALLDEAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87520 # 1wbhA.137.98 read from T0547.t06.many.frag # found chain 1wbhA in training set T0547 137 :RELINIGFI 1wbhA 98 :EPLLKAATE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87521 # 1ezwA.137.179 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 137 :RELINIGFI 1ezwA 180 :PIMLKTAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87522 # 1vkmA.137.75 read from T0547.t06.many.frag # found chain 1vkmA in template set T0547 137 :RELINIGFI 1vkmA 64 :EEELEAMMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87523 # 1nofA.137.30 read from T0547.t06.many.frag # found chain 1nofA in training set T0547 137 :RELINIGFI 1nofA 61 :TEQINTAYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87524 # 1thfD.137.85 read from T0547.t06.many.frag # found chain 1thfD in training set T0547 137 :RELINIGFI 1thfD 86 :FETASELIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87525 # 1yxyA.137.90 read from T0547.t06.many.frag # found chain 1yxyA in training set T0547 137 :RELINIGFI 1yxyA 91 :MTEVDQLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87526 # 1vjrA.138.139 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 138 :ELINIGFIA 1vjrA 128 :ERLKKACIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87527 # 1vkyA.138.240 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 138 :ELINIGFIA 1vkyA 229 :ETVRKLRET Number of specific fragments extracted= 1 number of extra gaps= 0 total=87528 # 1sr9A.138.148 read from T0547.t06.many.frag # found chain 1sr9A in template set T0547 138 :ELINIGFIA 1sr9A 149 :ELIERTFQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87529 # 1byrA.138.40 read from T0547.t06.many.frag # found chain 1byrA in template set T0547 138 :ELINIGFIA 1byrA 41 :DIMKALVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87530 # 1lw7A.138.16 read from T0547.t06.many.frag # found chain 1lw7A in template set T0547 138 :ELINIGFIA 1lw7A 73 :GHINMIYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87531 # 1onrA.138.136 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 138 :ELINIGFIA 1onrA 138 :QGIRAAEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87532 # 2bdeA.138.189 read from T0547.t06.many.frag # found chain 2bdeA in template set T0547 138 :ELINIGFIA 2bdeA 190 :EVVEGLKHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=87533 # 1u02A.138.26 read from T0547.t06.many.frag # found chain 1u02A in template set T0547 138 :ELINIGFIA 1u02A 27 :GLLSLISDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87534 # 1zxxA.138.103 read from T0547.t06.many.frag # found chain 1zxxA in template set T0547 138 :ELINIGFIA 1zxxA 104 :GSYHGALQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87535 # 1l6rA.138.25 read from T0547.t06.many.frag # found chain 1l6rA in training set T0547 138 :ELINIGFIA 1l6rA 23 :KAIESIRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87536 # 1cs1A.138.102 read from T0547.t06.many.frag # found chain 1cs1A in training set T0547 138 :ELINIGFIA 1cs1A 103 :GSYRLFDSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87537 # 1m0dA.138.61 read from T0547.t06.many.frag # found chain 1m0dA in template set T0547 138 :ELINIGFIA 1m0dA 73 :DDRKKHLLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87538 # 1wddA.138.183 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 138 :ELINIGFIA 1wddA 184 :NYGRACYEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=87539 # 1uhvA.138.33 read from T0547.t06.many.frag # found chain 1uhvA in template set T0547 138 :ELINIGFIA 1uhvA 34 :EYIETLKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87540 # 1yt3A.138.146 read from T0547.t06.many.frag # found chain 1yt3A in training set T0547 138 :ELINIGFIA 1yt3A 147 :RQCEYAAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=87541 # 2ar0A.138.155 read from T0547.t06.many.frag # found chain 2ar0A in template set T0547 138 :ELINIGFIA 2ar0A 156 :PLIKTIIHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87542 # 2a3nA.138.116 read from T0547.t06.many.frag # found chain 2a3nA in training set T0547 138 :ELINIGFIA 2a3nA 105 :ESVAIAEWC Number of specific fragments extracted= 1 number of extra gaps= 0 total=87543 # 1lshA.138.390 read from T0547.t06.many.frag # found chain 1lshA in template set T0547 138 :ELINIGFIA 1lshA 407 :ESLSYAREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87544 # 1zroA.138.213 read from T0547.t06.many.frag # found chain 1zroA in template set T0547 138 :ELINIGFIA 1zroA 214 :ECIDPCMKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=87545 # 1oi7A.138.75 read from T0547.t06.many.frag # found chain 1oi7A in training set T0547 138 :ELINIGFIA 1oi7A 76 :AAADAALEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87546 # 1moq.138.113 read from T0547.t06.many.frag # found chain 1moq in training set T0547 138 :ELINIGFIA 1moq 354 :DTLAGLRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87547 # 1vd6A.138.109 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 138 :ELINIGFIA 1vd6A 110 :EAARRLAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87548 2afaA expands to /projects/compbio/data/pdb/2afa.pdb.gz 2afaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2afaA.138.193 read from T0547.t06.many.frag # adding 2afaA to template set # found chain 2afaA in template set T0547 138 :ELINIGFIA 2afaA 194 :KWLDRALRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87549 # 1k92A.138.21 read from T0547.t06.many.frag # found chain 1k92A in training set T0547 138 :ELINIGFIA 1k92A 22 :DTSAALLWM Number of specific fragments extracted= 1 number of extra gaps= 0 total=87550 # 2b8nA.138.107 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 138 :ELINIGFIA 2b8nA 96 :NTIKTTRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87551 # 1dd9A.138.196 read from T0547.t06.many.frag # found chain 1dd9A in training set T0547 138 :ELINIGFIA 1dd9A 292 :DHIQLLFRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87552 # 1knwA.138.106 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 138 :ELINIGFIA 1knwA 107 :ATLERVSEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87553 # 1ezwA.138.180 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 138 :ELINIGFIA 1ezwA 181 :IMLKTAGEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87554 # 1oltA.138.120 read from T0547.t06.many.frag # found chain 1oltA in template set T0547 138 :ELINIGFIA 1oltA 121 :AQISRLMKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87555 # 7odcA.138.117 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 138 :ELINIGFIA 7odcA 118 :SQIKYAASN Number of specific fragments extracted= 1 number of extra gaps= 0 total=87556 # 1vjrA.139.140 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 139 :LINIGFIAA 1vjrA 129 :RLKKACILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87557 # 1vkyA.139.241 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 139 :LINIGFIAA 1vkyA 230 :TVRKLRETR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87558 # 1onrA.139.137 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 139 :LINIGFIAA 1onrA 139 :GIRAAEQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87559 # 1zxxA.139.104 read from T0547.t06.many.frag # found chain 1zxxA in template set T0547 139 :LINIGFIAA 1zxxA 105 :SYHGALQLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87560 # 1oi7A.139.76 read from T0547.t06.many.frag # found chain 1oi7A in training set T0547 139 :LINIGFIAA 1oi7A 77 :AADAALEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87561 # 1lw7A.139.17 read from T0547.t06.many.frag # found chain 1lw7A in template set T0547 139 :LINIGFIAA 1lw7A 74 :HINMIYEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=87562 # 1k92A.139.22 read from T0547.t06.many.frag # found chain 1k92A in training set T0547 139 :LINIGFIAA 1k92A 23 :TSAALLWMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87563 # 1byrA.139.41 read from T0547.t06.many.frag # found chain 1byrA in template set T0547 139 :LINIGFIAA 1byrA 42 :IMKALVAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87564 # 2a3nA.139.117 read from T0547.t06.many.frag # found chain 2a3nA in training set T0547 139 :LINIGFIAA 2a3nA 106 :SVAIAEWCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87565 # 1sr9A.139.149 read from T0547.t06.many.frag # found chain 1sr9A in template set T0547 139 :LINIGFIAA 1sr9A 150 :LIERTFQAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=87566 # 1wddA.139.184 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 139 :LINIGFIAA 1wddA 185 :YGRACYECL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87567 # 1u02A.139.27 read from T0547.t06.many.frag # found chain 1u02A in template set T0547 139 :LINIGFIAA 1u02A 28 :LLSLISDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87568 # 1cs1A.139.103 read from T0547.t06.many.frag # found chain 1cs1A in training set T0547 139 :LINIGFIAA 1cs1A 104 :SYRLFDSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87569 # 1yt3A.139.147 read from T0547.t06.many.frag # found chain 1yt3A in training set T0547 139 :LINIGFIAA 1yt3A 148 :QCEYAAADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87570 # 1m0dA.139.62 read from T0547.t06.many.frag # found chain 1m0dA in template set T0547 139 :LINIGFIAA 1m0dA 74 :DRKKHLLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87571 # 2afaA.139.194 read from T0547.t06.many.frag # found chain 2afaA in template set T0547 139 :LINIGFIAA 2afaA 195 :WLDRALRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87572 # 2bdeA.139.190 read from T0547.t06.many.frag # found chain 2bdeA in template set T0547 139 :LINIGFIAA 2bdeA 191 :VVEGLKHFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87573 # 1h6dA.139.162 read from T0547.t06.many.frag # found chain 1h6dA in template set T0547 139 :LINIGFIAA 1h6dA 163 :HAEFAIRAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=87574 # 1gqiA.139.185 read from T0547.t06.many.frag # found chain 1gqiA in training set T0547 139 :LINIGFIAA 1gqiA 190 :YTDYARINA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87575 # 1uhvA.139.34 read from T0547.t06.many.frag # found chain 1uhvA in template set T0547 139 :LINIGFIAA 1uhvA 35 :YIETLKYVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87576 # 1moq.139.114 read from T0547.t06.many.frag # found chain 1moq in training set T0547 139 :LINIGFIAA 1moq 355 :TLAGLRLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87577 # 2ar0A.139.156 read from T0547.t06.many.frag # found chain 2ar0A in template set T0547 139 :LINIGFIAA 2ar0A 157 :LIKTIIHLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87578 # 1xdpA.139.380 read from T0547.t06.many.frag # found chain 1xdpA in template set T0547 139 :LINIGFIAA 1xdpA 382 :IIDSMIHAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87579 # 1zroA.139.214 read from T0547.t06.many.frag # found chain 1zroA in template set T0547 139 :LINIGFIAA 1zroA 215 :CIDPCMKYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87580 # 1l6rA.139.26 read from T0547.t06.many.frag # found chain 1l6rA in training set T0547 139 :LINIGFIAA 1l6rA 24 :AIESIRSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87581 # 1k78A.139.36 read from T0547.t06.many.frag # found chain 1k78A in template set T0547 139 :LINIGFIAA 1k78A 37 :VRQRIVELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87582 # 2fb6A.139.59 read from T0547.t06.many.frag # found chain 2fb6A in training set T0547 139 :LINIGFIAA 2fb6A 57 :VQTEILEML Number of specific fragments extracted= 1 number of extra gaps= 0 total=87583 # 1xpjA.139.28 read from T0547.t06.many.frag # found chain 1xpjA in template set T0547 139 :LINIGFIAA 1xpjA 29 :VIEQLREYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=87584 # 1onwA.139.115 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 139 :LINIGFIAA 1onwA 116 :LLAKTRALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=87585 # 1o66A.139.96 read from T0547.t06.many.frag # found chain 1o66A in training set T0547 139 :LINIGFIAA 1o66A 95 :AFAAAAELM Number of specific fragments extracted= 1 number of extra gaps= 0 total=87586 # 1vjrA.140.141 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 140 :INIGFIAAE 1vjrA 130 :LKKACILLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87587 # 1vkyA.140.242 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 140 :INIGFIAAE 1vkyA 231 :VRKLRETRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87588 # 1onrA.140.138 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 140 :INIGFIAAE 1onrA 140 :IRAAEQLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87589 # 1oi7A.140.77 read from T0547.t06.many.frag # found chain 1oi7A in training set T0547 140 :INIGFIAAE 1oi7A 78 :ADAALEAAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=87590 # 1byrA.140.42 read from T0547.t06.many.frag # found chain 1byrA in template set T0547 140 :INIGFIAAE 1byrA 43 :MKALVAAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87591 # 1zxxA.140.105 read from T0547.t06.many.frag # found chain 1zxxA in template set T0547 140 :INIGFIAAE 1zxxA 106 :YHGALQLTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87592 # 1k92A.140.23 read from T0547.t06.many.frag # found chain 1k92A in training set T0547 140 :INIGFIAAE 1k92A 24 :SAALLWMRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=87593 # 2a3nA.140.118 read from T0547.t06.many.frag # found chain 2a3nA in training set T0547 140 :INIGFIAAE 2a3nA 107 :VAIAEWCKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87594 # 1lw7A.140.18 read from T0547.t06.many.frag # found chain 1lw7A in template set T0547 140 :INIGFIAAE 1lw7A 75 :INMIYEAFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87595 # 2bdeA.140.191 read from T0547.t06.many.frag # found chain 2bdeA in template set T0547 140 :INIGFIAAE 2bdeA 192 :VEGLKHFIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87596 # 1wddA.140.185 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 140 :INIGFIAAE 1wddA 186 :GRACYECLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87597 # 1xdpA.140.381 read from T0547.t06.many.frag # found chain 1xdpA in template set T0547 140 :INIGFIAAE 1xdpA 383 :IDSMIHAAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=87598 # 1sr9A.140.150 read from T0547.t06.many.frag # found chain 1sr9A in template set T0547 140 :INIGFIAAE 1sr9A 151 :IERTFQACS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87599 # 1h6dA.140.163 read from T0547.t06.many.frag # found chain 1h6dA in template set T0547 140 :INIGFIAAE 1h6dA 164 :AEFAIRAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87600 # 1l6rA.140.27 read from T0547.t06.many.frag # found chain 1l6rA in training set T0547 140 :INIGFIAAE 1l6rA 25 :IESIRSAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87601 # 2afaA.140.195 read from T0547.t06.many.frag # found chain 2afaA in template set T0547 140 :INIGFIAAE 2afaA 196 :LDRALRIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87602 # 1lshA.140.392 read from T0547.t06.many.frag # found chain 1lshA in template set T0547 140 :INIGFIAAE 1lshA 409 :LSYARELLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=87603 # 1xpjA.140.29 read from T0547.t06.many.frag # found chain 1xpjA in template set T0547 140 :INIGFIAAE 1xpjA 30 :IEQLREYHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=87604 # 1cs1A.140.104 read from T0547.t06.many.frag # found chain 1cs1A in training set T0547 140 :INIGFIAAE 1cs1A 105 :YRLFDSLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87605 # 1u02A.140.28 read from T0547.t06.many.frag # found chain 1u02A in template set T0547 140 :INIGFIAAE 1u02A 29 :LSLISDLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87606 # 1zroA.140.215 read from T0547.t06.many.frag # found chain 1zroA in template set T0547 140 :INIGFIAAE 1zroA 216 :IDPCMKYRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=87607 # 1o66A.140.97 read from T0547.t06.many.frag # found chain 1o66A in training set T0547 140 :INIGFIAAE 1o66A 96 :FAAAAELMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87608 # 1m0dA.140.63 read from T0547.t06.many.frag # found chain 1m0dA in template set T0547 140 :INIGFIAAE 1m0dA 75 :RKKHLLIRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87609 # 1moq.140.115 read from T0547.t06.many.frag # found chain 1moq in training set T0547 140 :INIGFIAAE 1moq 356 :LAGLRLSKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87610 # 1yt3A.140.148 read from T0547.t06.many.frag # found chain 1yt3A in training set T0547 140 :INIGFIAAE 1yt3A 149 :CEYAAADVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=87611 1wv2A expands to /projects/compbio/data/pdb/1wv2.pdb.gz 1wv2A:# 1wv2A.140.124 read from T0547.t06.many.frag # adding 1wv2A to template set # found chain 1wv2A in template set T0547 140 :INIGFIAAE 1wv2A 1125 :LKAAEQLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87612 # 2fb6A.140.60 read from T0547.t06.many.frag # found chain 2fb6A in training set T0547 140 :INIGFIAAE 2fb6A 58 :QTEILEMLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=87613 # 1uhvA.140.35 read from T0547.t06.many.frag # found chain 1uhvA in template set T0547 140 :INIGFIAAE 1uhvA 36 :IETLKYVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87614 # 1k78A.140.37 read from T0547.t06.many.frag # found chain 1k78A in template set T0547 140 :INIGFIAAE 1k78A 38 :RQRIVELAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=87615 # 1onwA.140.116 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 140 :INIGFIAAE 1onwA 117 :LAKTRALNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87616 # 1vkyA.141.243 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 141 :NIGFIAAEM 1vkyA 232 :RKLRETRER Number of specific fragments extracted= 1 number of extra gaps= 0 total=87617 # 1vjrA.141.142 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 141 :NIGFIAAEM 1vjrA 131 :KKACILLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87618 # 1byrA.141.43 read from T0547.t06.many.frag # found chain 1byrA in template set T0547 141 :NIGFIAAEM 1byrA 44 :KALVAAKKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87619 # 1k92A.141.24 read from T0547.t06.many.frag # found chain 1k92A in training set Warning: unaligning (T0547)M149 (1k92A)K33 because G (3-10) conformation "forbidden" or filtered. T0547 141 :NIGFIAAE 1k92A 25 :AALLWMRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=87620 # 1zxxA.141.106 read from T0547.t06.many.frag # found chain 1zxxA in template set T0547 141 :NIGFIAAEM 1zxxA 107 :HGALQLTRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=87621 # 1oi7A.141.78 read from T0547.t06.many.frag # found chain 1oi7A in training set T0547 141 :NIGFIAAEM 1oi7A 79 :DAALEAAHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87622 # 1onrA.141.139 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 141 :NIGFIAAEM 1onrA 141 :RAAEQLEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87623 # 2bdeA.141.192 read from T0547.t06.many.frag # found chain 2bdeA in template set T0547 141 :NIGFIAAEM 2bdeA 193 :EGLKHFIRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=87624 # 2a3nA.141.119 read from T0547.t06.many.frag # found chain 2a3nA in training set T0547 141 :NIGFIAAEM 2a3nA 108 :AIAEWCKAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=87625 # 1xdpA.141.382 read from T0547.t06.many.frag # found chain 1xdpA in template set T0547 141 :NIGFIAAEM 1xdpA 384 :DSMIHAAHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=87626 # 1h6dA.141.164 read from T0547.t06.many.frag # found chain 1h6dA in template set T0547 141 :NIGFIAAEM 1h6dA 165 :EFAIRAFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87627 # 1lw7A.141.19 read from T0547.t06.many.frag # found chain 1lw7A in template set T0547 141 :NIGFIAAEM 1lw7A 76 :NMIYEAFSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87628 # 1l6rA.141.28 read from T0547.t06.many.frag # found chain 1l6rA in training set T0547 141 :NIGFIAAEM 1l6rA 26 :ESIRSAEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87629 # 1v8bA.141.60 read from T0547.t06.many.frag # found chain 1v8bA in template set T0547 141 :NIGFIAAEM 1v8bA 61 :LLIETLQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87630 # 1wddA.141.186 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 141 :NIGFIAAEM 1wddA 187 :RACYECLRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87631 # 1ls1A.141.116 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 141 :NIGFIAAEM 1ls1A 117 :KLALYYKGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87632 # 1moq.141.116 read from T0547.t06.many.frag # found chain 1moq in training set T0547 141 :NIGFIAAEM 1moq 357 :AGLRLSKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87633 # 1onwA.141.117 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 141 :NIGFIAAEM 1onwA 118 :AKTRALNEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87634 # 1cs1A.141.105 read from T0547.t06.many.frag # found chain 1cs1A in training set T0547 141 :NIGFIAAEM 1cs1A 106 :RLFDSLAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87635 # 1o66A.141.98 read from T0547.t06.many.frag # found chain 1o66A in training set T0547 141 :NIGFIAAEM 1o66A 97 :AAAAELMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87636 # 2fb6A.141.61 read from T0547.t06.many.frag # found chain 2fb6A in training set T0547 141 :NIGFIAAEM 2fb6A 59 :TEILEMLQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87637 # 1wv2A.141.125 read from T0547.t06.many.frag # found chain 1wv2A in template set T0547 141 :NIGFIAAEM 1wv2A 1126 :KAAEQLVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=87638 # 1xpjA.141.30 read from T0547.t06.many.frag # found chain 1xpjA in template set T0547 141 :NIGFIAAEM 1xpjA 31 :EQLREYHQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87639 # 2basA.141.160 read from T0547.t06.many.frag # found chain 2basA in template set T0547 141 :NIGFIAAEM 2basA 137 :HMLAYYRTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=87640 # 1k78A.141.38 read from T0547.t06.many.frag # found chain 1k78A in template set T0547 141 :NIGFIAAEM 1k78A 39 :QRIVELAHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=87641 # 1f2vA.141.70 read from T0547.t06.many.frag # found chain 1f2vA in template set T0547 141 :NIGFIAAEM 1f2vA 62 :SSARAALKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87642 # 1hdoA.141.17 read from T0547.t06.many.frag # found chain 1hdoA in training set T0547 141 :NIGFIAAEM 1hdoA 18 :TTLAQAVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87643 # 1sr9A.141.151 read from T0547.t06.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)A147 (1sr9A)C158 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M149 (1sr9A)G160 because T (delta_L) conformation "forbidden" or filtered. T0547 141 :NIGFIA 1sr9A 152 :ERTFQA T0547 148 :E 1sr9A 159 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=87645 # 1gqiA.141.187 read from T0547.t06.many.frag # found chain 1gqiA in training set T0547 141 :NIGFIAAEM 1gqiA 192 :DYARINASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87646 # 1qtwA.141.15 read from T0547.t06.many.frag # found chain 1qtwA in training set T0547 141 :NIGFIAAEM 1qtwA 16 :NAAIRAAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87647 # 1k92A.142.25 read from T0547.t06.many.frag # found chain 1k92A in training set T0547 142 :IGFIAAEMG 1k92A 26 :ALLWMRQKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87648 # 1zxxA.142.107 read from T0547.t06.many.frag # found chain 1zxxA in template set Warning: unaligning (T0547)M149 (1zxxA)H115 because G (3-10) conformation "forbidden" or filtered. T0547 142 :IGFIAAE 1zxxA 108 :GALQLTR T0547 150 :G 1zxxA 116 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=87650 # 1vjrA.142.143 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 142 :IGFIAAEMG 1vjrA 132 :KACILLRKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87651 # 1byrA.142.44 read from T0547.t06.many.frag # found chain 1byrA in template set T0547 142 :IGFIAAEMG 1byrA 45 :ALVAAKKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87652 # 1vkyA.142.244 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 142 :IGFIAAEMG 1vkyA 233 :KLRETRERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87653 # 2bdeA.142.193 read from T0547.t06.many.frag # found chain 2bdeA in template set T0547 142 :IGFIAAEMG 2bdeA 194 :GLKHFIRYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87654 # 1oi7A.142.79 read from T0547.t06.many.frag # found chain 1oi7A in training set Warning: unaligning (T0547)M149 (1oi7A)A87 because G (3-10) conformation "forbidden" or filtered. T0547 142 :IGFIAAE 1oi7A 80 :AALEAAH T0547 150 :G 1oi7A 88 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=87656 # 1xdpA.142.383 read from T0547.t06.many.frag # found chain 1xdpA in template set T0547 142 :IGFIAAEMG 1xdpA 385 :SMIHAAHNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87657 # 1v8bA.142.61 read from T0547.t06.many.frag # found chain 1v8bA in template set T0547 142 :IGFIAAEMG 1v8bA 62 :LIETLQKLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87658 # 1onrA.142.140 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 142 :IGFIAAEMG 1onrA 142 :AAEQLEKEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87659 # 1h6dA.142.165 read from T0547.t06.many.frag # found chain 1h6dA in template set T0547 142 :IGFIAAEMG 1h6dA 166 :FAIRAFKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87660 # 1ls1A.142.117 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 142 :IGFIAAEMG 1ls1A 118 :LALYYKGKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87661 # 2basA.142.161 read from T0547.t06.many.frag # found chain 2basA in template set T0547 142 :IGFIAAEMG 2basA 138 :MLAYYRTYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87662 # 1o66A.142.99 read from T0547.t06.many.frag # found chain 1o66A in training set T0547 142 :IGFIAAEMG 1o66A 98 :AAAELMAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87663 # 1wv2A.142.126 read from T0547.t06.many.frag # found chain 1wv2A in template set T0547 142 :IGFIAAEMG 1wv2A 1127 :AAEQLVKDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87664 # 2a3nA.142.120 read from T0547.t06.many.frag # found chain 2a3nA in training set T0547 142 :IGFIAAEMG 2a3nA 109 :IAEWCKAQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87665 # 1l6rA.142.29 read from T0547.t06.many.frag # found chain 1l6rA in training set T0547 142 :IGFIAAEMG 1l6rA 27 :SIRSAEKKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87666 # 1gsa.142.23 read from T0547.t06.many.frag # found chain 1gsa in template set Warning: unaligning (T0547)M149 (1gsa)R31 because G (3-10) conformation "forbidden" or filtered. T0547 142 :IGFIAAE 1gsa 24 :MLLEAQR T0547 150 :G 1gsa 32 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=87668 # 1k78A.142.39 read from T0547.t06.many.frag # found chain 1k78A in template set T0547 142 :IGFIAAEMG 1k78A 40 :RIVELAHQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87669 # 1wddA.142.187 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 142 :IGFIAAEMG 1wddA 188 :ACYECLRGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87670 # 1cs1A.142.106 read from T0547.t06.many.frag # found chain 1cs1A in training set T0547 142 :IGFIAAEMG 1cs1A 107 :LFDSLAKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87671 # 1f2vA.142.71 read from T0547.t06.many.frag # found chain 1f2vA in template set T0547 142 :IGFIAAEMG 1f2vA 63 :SARAALKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87672 # 1hdoA.142.18 read from T0547.t06.many.frag # found chain 1hdoA in training set T0547 142 :IGFIAAEMG 1hdoA 19 :TLAQAVQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87673 # 1onwA.142.118 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 142 :IGFIAAEMG 1onwA 119 :KTRALNEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87674 # 1moq.142.117 read from T0547.t06.many.frag # found chain 1moq in training set T0547 142 :IGFIAAEMG 1moq 358 :GLRLSKELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87675 # 1ofuX.142.73 read from T0547.t06.many.frag # found chain 1ofuX in template set T0547 142 :IGFIAAEMG 1ofuX 116 :LSCEALRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87676 # 2fb6A.142.62 read from T0547.t06.many.frag # found chain 2fb6A in training set T0547 142 :IGFIAAEMG 2fb6A 60 :EILEMLQSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87677 # 1ir6A.142.24 read from T0547.t06.many.frag # found chain 1ir6A in template set T0547 142 :IGFIAAEMG 1ir6A 64 :LLEEALRQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87678 # 2avuE.142.14 read from T0547.t06.many.frag # found chain 2avuE in template set T0547 142 :IGFIAAEMG 2avuE 15 :LAMELITLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87679 # 1k3yA.142.19 read from T0547.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0547)G150 (1k3yA)E29 because P (beta_P) conformation "forbidden" or filtered. T0547 142 :IGFIAAEM 1k3yA 21 :WLLAAAGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=87680 # 1zxxA.143.108 read from T0547.t06.many.frag # found chain 1zxxA in template set T0547 143 :GFIAAEMGH 1zxxA 109 :ALQLTRHGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=87681 # 1byrA.143.45 read from T0547.t06.many.frag # found chain 1byrA in template set T0547 143 :GFIAAEMGH 1byrA 46 :LVAAKKRGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87682 # 2bdeA.143.194 read from T0547.t06.many.frag # found chain 2bdeA in template set T0547 143 :GFIAAEMGH 2bdeA 195 :LKHFIRYGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87683 # 1v8bA.143.62 read from T0547.t06.many.frag # found chain 1v8bA in template set Warning: unaligning (T0547)M149 (1v8bA)L69 because G (3-10) conformation "forbidden" or filtered. T0547 143 :GFIAAE 1v8bA 63 :IETLQK T0547 150 :GH 1v8bA 70 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87685 # 1oi7A.143.80 read from T0547.t06.many.frag # found chain 1oi7A in training set T0547 143 :GFIAAEMGH 1oi7A 81 :ALEAAHAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87686 # 1k92A.143.26 read from T0547.t06.many.frag # found chain 1k92A in training set T0547 143 :GFIAAEMGH 1k92A 27 :LLWMRQKGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87687 # 1vjrA.143.144 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 143 :GFIAAEMGH 1vjrA 133 :ACILLRKGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87688 # 1vkyA.143.245 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 143 :GFIAAEMGH 1vkyA 234 :LRETRERGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=87689 # 1xdpA.143.384 read from T0547.t06.many.frag # found chain 1xdpA in template set T0547 143 :GFIAAEMGH 1xdpA 386 :MIHAAHNGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87690 # 1onrA.143.141 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 143 :GFIAAEMGH 1onrA 143 :AEQLEKEGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87691 # 1o66A.143.100 read from T0547.t06.many.frag # found chain 1o66A in training set T0547 143 :GFIAAEMGH 1o66A 99 :AAELMAAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87692 # 1l6rA.143.30 read from T0547.t06.many.frag # found chain 1l6rA in training set T0547 143 :GFIAAEMGH 1l6rA 28 :IRSAEKKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87693 # 2a3nA.143.121 read from T0547.t06.many.frag # found chain 2a3nA in training set T0547 143 :GFIAAEMGH 2a3nA 110 :AEWCKAQGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87694 # 1gsa.143.24 read from T0547.t06.many.frag # found chain 1gsa in template set T0547 143 :GFIAAEMGH 1gsa 25 :LLEAQRRGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=87695 # 1i24A.143.27 read from T0547.t06.many.frag # found chain 1i24A in template set T0547 143 :GFIAAEMGH 1i24A 18 :ALHLSKKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=87696 # 1ls1A.143.118 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 143 :GFIAAEMGH 1ls1A 119 :ALYYKGKGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87697 # 2basA.143.162 read from T0547.t06.many.frag # found chain 2basA in template set T0547 143 :GFIAAEMGH 2basA 139 :LAYYRTYGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87698 # 1h6dA.143.166 read from T0547.t06.many.frag # found chain 1h6dA in template set T0547 143 :GFIAAEMGH 1h6dA 167 :AIRAFKAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87699 # 2avuE.143.15 read from T0547.t06.many.frag # found chain 2avuE in template set T0547 143 :GFIAAEMGH 2avuE 16 :AMELITLGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87700 # 1y5mA.143.34 read from T0547.t06.many.frag # found chain 1y5mA in template set T0547 143 :GFIAAEMGH 1y5mA 51 :AYHLSKMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87701 # 1onwA.143.119 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 143 :GFIAAEMGH 1onwA 120 :TRALNEEGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87702 # 1us0A.143.144 read from T0547.t06.many.frag # found chain 1us0A in training set T0547 143 :GFIAAEMGH 1us0A 144 :MEELVDEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87703 # 1wddA.143.188 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 143 :GFIAAEMGH 1wddA 189 :CYECLRGGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87704 # 1b43A.143.64 read from T0547.t06.many.frag # found chain 1b43A in template set T0547 143 :GFIAAEMGH 1b43A 64 :TINLMEAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87705 # 2f5tX.143.41 read from T0547.t06.many.frag # found chain 2f5tX in training set Warning: unaligning (T0547)G143 because of BadResidue code BAD_PEPTIDE at template residue (2f5tX)L151 T0547 144 :FIAAEMGH 2f5tX 152 :IKTLERGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=87706 # 1pgjA.143.16 read from T0547.t06.many.frag # found chain 1pgjA in template set T0547 143 :GFIAAEMGH 1pgjA 17 :ALNIAEKGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=87707 # 1rkxA.143.25 read from T0547.t06.many.frag # found chain 1rkxA in template set T0547 143 :GFIAAEMGH 1rkxA 26 :SLWLQTMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87708 # 1wv2A.143.127 read from T0547.t06.many.frag # found chain 1wv2A in template set Warning: unaligning (T0547)M149 (1wv2A)D1134 because G (3-10) conformation "forbidden" or filtered. T0547 143 :GFIAAE 1wv2A 1128 :AEQLVK T0547 150 :GH 1wv2A 1135 :GF Number of specific fragments extracted= 2 number of extra gaps= 1 total=87710 # 1k78A.143.40 read from T0547.t06.many.frag # found chain 1k78A in template set T0547 143 :GFIAAEMGH 1k78A 41 :IVELAHQGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87711 # 1ir6A.143.25 read from T0547.t06.many.frag # found chain 1ir6A in template set T0547 143 :GFIAAEMGH 1ir6A 65 :LEEALRQGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87712 # 1zxxA.144.109 read from T0547.t06.many.frag # found chain 1zxxA in template set Warning: unaligning (T0547)M149 (1zxxA)H115 because G (3-10) conformation "forbidden" or filtered. T0547 144 :FIAAE 1zxxA 110 :LQLTR T0547 150 :GHN 1zxxA 116 :GFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=87714 # 1v8bA.144.63 read from T0547.t06.many.frag # found chain 1v8bA in template set T0547 144 :FIAAEMGHN 1v8bA 64 :ETLQKLGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=87715 # 2bdeA.144.195 read from T0547.t06.many.frag # found chain 2bdeA in template set Warning: unaligning (T0547)M149 (2bdeA)Y201 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (2bdeA)K203 because P (beta_P) conformation "forbidden" or filtered. T0547 144 :FIAAE 2bdeA 196 :KHFIR T0547 150 :G 2bdeA 202 :G T0547 152 :N 2bdeA 204 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=87718 # 1k92A.144.27 read from T0547.t06.many.frag # found chain 1k92A in training set Warning: unaligning (T0547)H151 (1k92A)A35 because P (beta_P) conformation "forbidden" or filtered. T0547 144 :FIAAEMG 1k92A 28 :LWMRQKG T0547 152 :N 1k92A 36 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=87720 # 1oi7A.144.81 read from T0547.t06.many.frag # found chain 1oi7A in training set T0547 144 :FIAAEMGHN 1oi7A 82 :LEAAHAGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=87721 # 1y5mA.144.35 read from T0547.t06.many.frag # found chain 1y5mA in template set T0547 144 :FIAAEMGHN 1y5mA 52 :YHLSKMGAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=87722 # 1byrA.144.46 read from T0547.t06.many.frag # found chain 1byrA in template set T0547 144 :FIAAEMGHN 1byrA 47 :VAAKKRGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=87723 # 1xdpA.144.385 read from T0547.t06.many.frag # found chain 1xdpA in template set T0547 144 :FIAAEMGHN 1xdpA 387 :IHAAHNGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87724 # 1o66A.144.101 read from T0547.t06.many.frag # found chain 1o66A in training set T0547 144 :FIAAEMGHN 1o66A 100 :AELMAAGAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=87725 # 2a3nA.144.122 read from T0547.t06.many.frag # found chain 2a3nA in training set T0547 144 :FIAAEMGHN 2a3nA 111 :EWCKAQGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87726 # 1ls1A.144.119 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 144 :FIAAEMGHN 1ls1A 120 :LYYKGKGRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87727 # 1b43A.144.65 read from T0547.t06.many.frag # found chain 1b43A in template set T0547 144 :FIAAEMGHN 1b43A 65 :INLMEAGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87728 # 1pgjA.144.17 read from T0547.t06.many.frag # found chain 1pgjA in template set T0547 144 :FIAAEMGHN 1pgjA 18 :LNIAEKGFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87729 # 1vkyA.144.246 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 144 :FIAAEMGHN 1vkyA 235 :RETRERGNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87730 # 1i24A.144.28 read from T0547.t06.many.frag # found chain 1i24A in template set T0547 144 :FIAAEMGHN 1i24A 19 :LHLSKKNYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87731 # 1h6dA.144.167 read from T0547.t06.many.frag # found chain 1h6dA in template set T0547 144 :FIAAEMGHN 1h6dA 168 :IRAFKAGKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=87732 # 2basA.144.163 read from T0547.t06.many.frag # found chain 2basA in template set T0547 144 :FIAAEMGHN 2basA 140 :AYYRTYGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87733 # 1l6rA.144.31 read from T0547.t06.many.frag # found chain 1l6rA in training set T0547 144 :FIAAEMGHN 1l6rA 29 :RSAEKKGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87734 # 1y1pA.144.28 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 144 :FIAAEMGHN 1y1pA 30 :EQLLEHGYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87735 # 1gsa.144.25 read from T0547.t06.many.frag # found chain 1gsa in template set T0547 144 :FIAAEMGHN 1gsa 26 :LEAQRRGYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87736 # 1vjrA.144.145 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 144 :FIAAEMGHN 1vjrA 134 :CILLRKGKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=87737 # 1tzlA.144.61 read from T0547.t06.many.frag # found chain 1tzlA in template set T0547 144 :FIAAEMGHN 1tzlA 63 :RELVGAGYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87738 # 1hdoA.144.20 read from T0547.t06.many.frag # found chain 1hdoA in training set T0547 144 :FIAAEMGHN 1hdoA 21 :AQAVQAGYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87739 # 1wv2A.144.128 read from T0547.t06.many.frag # found chain 1wv2A in template set T0547 144 :FIAAEMGHN 1wv2A 1129 :EQLVKDGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=87740 # 1ir6A.144.26 read from T0547.t06.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)M149 (1ir6A)Q71 because G (3-10) conformation "forbidden" or filtered. T0547 144 :FIAAE 1ir6A 66 :EEALR T0547 150 :GHN 1ir6A 72 :GKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=87742 # 1n4wA.144.21 read from T0547.t06.many.frag # found chain 1n4wA in training set T0547 144 :FIAAEMGHN 1n4wA 27 :LRLGEAGVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=87743 # 1onwA.144.120 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 144 :FIAAEMGHN 1onwA 121 :RALNEEGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87744 # 1rkxA.144.26 read from T0547.t06.many.frag # found chain 1rkxA in template set T0547 144 :FIAAEMGHN 1rkxA 27 :LWLQTMGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87745 # 1onrA.144.142 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 144 :FIAAEMGHN 1onrA 144 :EQLEKEGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=87746 # 1wddA.144.189 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 144 :FIAAEMGHN 1wddA 190 :YECLRGGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=87747 # 1zxxA.145.110 read from T0547.t06.many.frag # found chain 1zxxA in template set Warning: unaligning (T0547)N152 (1zxxA)N118 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAEMGH 1zxxA 111 :QLTRHGF T0547 153 :I 1zxxA 119 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=87749 # 1byrA.145.47 read from T0547.t06.many.frag # found chain 1byrA in template set T0547 145 :IAAEMGHNI 1byrA 48 :AAKKRGVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87750 # 1oi7A.145.82 read from T0547.t06.many.frag # found chain 1oi7A in training set T0547 145 :IAAEMGHNI 1oi7A 83 :EAAHAGIPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87751 # 2a3nA.145.123 read from T0547.t06.many.frag # found chain 2a3nA in training set T0547 145 :IAAEMGHNI 2a3nA 112 :WCKAQGIRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87752 # 1xdpA.145.386 read from T0547.t06.many.frag # found chain 1xdpA in template set T0547 145 :IAAEMGHNI 1xdpA 388 :HAAHNGKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87753 # 1vkyA.145.247 read from T0547.t06.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)N152 (1vkyA)R243 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAEMGH 1vkyA 236 :ETRERGN T0547 153 :I 1vkyA 244 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=87755 # 1n4wA.145.22 read from T0547.t06.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)H151 (1n4wA)V34 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAEMG 1n4wA 28 :RLGEAG T0547 152 :NI 1n4wA 35 :QT Number of specific fragments extracted= 2 number of extra gaps= 1 total=87757 # 1i24A.145.29 read from T0547.t06.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)H151 (1i24A)Y26 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAEMG 1i24A 20 :HLSKKN T0547 152 :NI 1i24A 27 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=87759 # 1gsa.145.26 read from T0547.t06.many.frag # found chain 1gsa in template set Warning: unaligning (T0547)H151 (1gsa)Y33 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAEMG 1gsa 27 :EAQRRG T0547 152 :NI 1gsa 34 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=87761 # 1k92A.145.28 read from T0547.t06.many.frag # found chain 1k92A in training set T0547 145 :IAAEMGHNI 1k92A 29 :WMRQKGAVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=87762 # 1yacA.145.124 read from T0547.t06.many.frag # found chain 1yacA in training set Warning: unaligning (T0547)M149 (1yacA)E129 because G (3-10) conformation "forbidden" or filtered. T0547 145 :IAAE 1yacA 125 :SAIE T0547 150 :GHNI 1yacA 130 :GFDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=87764 # 1pgjA.145.18 read from T0547.t06.many.frag # found chain 1pgjA in template set T0547 145 :IAAEMGHNI 1pgjA 19 :NIAEKGFKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87765 # 2bdeA.145.196 read from T0547.t06.many.frag # found chain 2bdeA in template set T0547 145 :IAAEMGHNI 2bdeA 197 :HFIRYGKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87766 # 1b43A.145.66 read from T0547.t06.many.frag # found chain 1b43A in template set T0547 145 :IAAEMGHNI 1b43A 66 :NLMEAGIKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=87767 # 1v8bA.145.64 read from T0547.t06.many.frag # found chain 1v8bA in template set T0547 145 :IAAEMGHNI 1v8bA 65 :TLQKLGAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87768 # 1em8A.145.30 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 145 :IAAEMGHNI 1em8A 31 :ERWRSGKRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87769 # 1ir6A.145.27 read from T0547.t06.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)M149 (1ir6A)Q71 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H151 (1ir6A)K73 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAE 1ir6A 67 :EALR T0547 150 :G 1ir6A 72 :G T0547 152 :NI 1ir6A 74 :RI Number of specific fragments extracted= 3 number of extra gaps= 2 total=87772 # 1w2wB.145.79 read from T0547.t06.many.frag # found chain 1w2wB in training set T0547 145 :IAAEMGHNI 1w2wB 300 :ICKQFGIKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=87773 # 1o66A.145.102 read from T0547.t06.many.frag # found chain 1o66A in training set T0547 145 :IAAEMGHNI 1o66A 101 :ELMAAGAHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=87774 # 1y5mA.145.36 read from T0547.t06.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)N152 (1y5mA)H60 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAEMGH 1y5mA 53 :HLSKMGA T0547 153 :I 1y5mA 61 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=87776 # 1ybdA.145.40 read from T0547.t06.many.frag # found chain 1ybdA in template set T0547 145 :IAAEMGHNI 1ybdA 43 :EVVKMGVQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87777 # 2d0oA.145.149 read from T0547.t06.many.frag # found chain 2d0oA in template set T0547 145 :IAAEMGHNI 2d0oA 150 :ASLRAGYQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87778 # 1rkxA.145.27 read from T0547.t06.many.frag # found chain 1rkxA in template set T0547 145 :IAAEMGHNI 1rkxA 28 :WLQTMGATV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87779 # 1ls1A.145.120 read from T0547.t06.many.frag # found chain 1ls1A in training set Warning: unaligning (T0547)M149 (1ls1A)K125 because G (3-10) conformation "forbidden" or filtered. T0547 145 :IAAE 1ls1A 121 :YYKG T0547 150 :GHNI 1ls1A 126 :GRRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=87781 # 1l6rA.145.32 read from T0547.t06.many.frag # found chain 1l6rA in training set T0547 145 :IAAEMGHNI 1l6rA 30 :SAEKKGLTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87782 # 1hdoA.145.21 read from T0547.t06.many.frag # found chain 1hdoA in training set T0547 145 :IAAEMGHNI 1hdoA 22 :QAVQAGYEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87783 # 1vjrA.145.146 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)H151 (1vjrA)K141 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAEMG 1vjrA 135 :ILLRKG T0547 152 :NI 1vjrA 142 :FY Number of specific fragments extracted= 2 number of extra gaps= 1 total=87785 # 2c1lA.145.58 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 145 :IAAEMGHNI 2c1lA 59 :EHINQGGRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87786 # 1s3eA.145.21 read from T0547.t06.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)N152 (1s3eA)N29 because P (beta_P) conformation "forbidden" or filtered. T0547 145 :IAAEMGH 1s3eA 22 :LLHDSGL T0547 153 :I 1s3eA 30 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=87788 # 1y1pA.145.29 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 145 :IAAEMGHNI 1y1pA 31 :QLLEHGYKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87789 # 2a3nA.146.124 read from T0547.t06.many.frag # found chain 2a3nA in training set T0547 146 :AAEMGHNIT 2a3nA 113 :CKAQGIRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87790 # 1n4wA.146.23 read from T0547.t06.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)N152 (1n4wA)Q35 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAEMGH 1n4wA 29 :LGEAGV T0547 153 :IT 1n4wA 36 :TL Number of specific fragments extracted= 2 number of extra gaps= 1 total=87792 # 1byrA.146.48 read from T0547.t06.many.frag # found chain 1byrA in template set T0547 146 :AAEMGHNIT 1byrA 49 :AKKRGVDVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87793 # 1oi7A.146.83 read from T0547.t06.many.frag # found chain 1oi7A in training set T0547 146 :AAEMGHNIT 1oi7A 84 :AAHAGIPLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87794 # 1xdpA.146.387 read from T0547.t06.many.frag # found chain 1xdpA in template set T0547 146 :AAEMGHNIT 1xdpA 389 :AAHNGKKVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87795 # 1zxxA.146.111 read from T0547.t06.many.frag # found chain 1zxxA in template set T0547 146 :AAEMGHNIT 1zxxA 112 :LTRHGFNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87796 # 1w2wB.146.80 read from T0547.t06.many.frag # found chain 1w2wB in training set T0547 146 :AAEMGHNIT 1w2wB 301 :CKQFGIKFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=87797 # 1b43A.146.67 read from T0547.t06.many.frag # found chain 1b43A in template set T0547 146 :AAEMGHNIT 1b43A 67 :LMEAGIKPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87798 # 1vkyA.146.248 read from T0547.t06.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)N152 (1vkyA)R243 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAEMGH 1vkyA 237 :TRERGN T0547 153 :IT 1vkyA 244 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=87800 # 1yacA.146.125 read from T0547.t06.many.frag # found chain 1yacA in training set T0547 146 :AAEMGHNIT 1yacA 126 :AIEEGFDVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=87801 # 1i24A.146.30 read from T0547.t06.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)N152 (1i24A)E27 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAEMGH 1i24A 21 :LSKKNY T0547 153 :IT 1i24A 28 :VC Number of specific fragments extracted= 2 number of extra gaps= 1 total=87803 # 1pgjA.146.19 read from T0547.t06.many.frag # found chain 1pgjA in template set Warning: unaligning (T0547)M149 (1pgjA)K23 because G (3-10) conformation "forbidden" or filtered. T0547 146 :AAE 1pgjA 20 :IAE T0547 150 :GHNIT 1pgjA 24 :GFKVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87805 # 1gsa.146.27 read from T0547.t06.many.frag # found chain 1gsa in template set Warning: unaligning (T0547)N152 (1gsa)E34 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAEMGH 1gsa 28 :AQRRGY T0547 153 :IT 1gsa 35 :LH Number of specific fragments extracted= 2 number of extra gaps= 1 total=87807 # 1ybdA.146.41 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)H151 (1ybdA)V49 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAEMG 1ybdA 44 :VVKMG T0547 152 :NIT 1ybdA 50 :QVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=87809 # 1em8A.146.31 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 146 :AAEMGHNIT 1em8A 32 :RWRSGKRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87810 # 1hdoA.146.22 read from T0547.t06.many.frag # found chain 1hdoA in training set T0547 146 :AAEMGHNIT 1hdoA 23 :AVQAGYEVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87811 # 2bdeA.146.197 read from T0547.t06.many.frag # found chain 2bdeA in template set Warning: unaligning (T0547)H151 (2bdeA)K203 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (2bdeA)K204 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAEMG 2bdeA 198 :FIRYG T0547 153 :IT 2bdeA 205 :IF Number of specific fragments extracted= 2 number of extra gaps= 1 total=87813 # 1ir6A.146.28 read from T0547.t06.many.frag # found chain 1ir6A in template set T0547 146 :AAEMGHNIT 1ir6A 68 :ALRQGKRIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87814 # 1rkxA.146.28 read from T0547.t06.many.frag # found chain 1rkxA in template set T0547 146 :AAEMGHNIT 1rkxA 29 :LQTMGATVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87815 # 1k92A.146.29 read from T0547.t06.many.frag # found chain 1k92A in training set T0547 146 :AAEMGHNIT 1k92A 30 :MRQKGAVPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=87816 # 1y5mA.146.37 read from T0547.t06.many.frag # found chain 1y5mA in template set T0547 146 :AAEMGHNIT 1y5mA 54 :LSKMGAHVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87817 # 1v8bA.146.65 read from T0547.t06.many.frag # found chain 1v8bA in template set T0547 146 :AAEMGHNIT 1v8bA 66 :LQKLGAQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87818 # 1e9rA.146.76 read from T0547.t06.many.frag # found chain 1e9rA in template set T0547 146 :AAEMGHNIT 1e9rA 147 :GLLRGDRMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87819 # 1ykjA.146.20 read from T0547.t06.many.frag # found chain 1ykjA in template set T0547 146 :AAEMGHNIT 1ykjA 1021 :LHKAGIDNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87820 # 2c5aA.146.48 read from T0547.t06.many.frag # found chain 2c5aA in training set Warning: unaligning (T0547)H151 (2c5aA)H52 because P (beta_P) conformation "forbidden" or filtered. T0547 146 :AAEMG 2c5aA 47 :LKHEG T0547 152 :NIT 2c5aA 53 :YVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=87822 # 1o66A.146.103 read from T0547.t06.many.frag # found chain 1o66A in training set T0547 146 :AAEMGHNIT 1o66A 102 :LMAAGAHMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87823 # 1wv2A.146.130 read from T0547.t06.many.frag # found chain 1wv2A in template set T0547 146 :AAEMGHNIT 1wv2A 1131 :LVKDGFDVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=87824 # 1tt7A.146.170 read from T0547.t06.many.frag # found chain 1tt7A in template set T0547 146 :AAEMGHNIT 1tt7A 171 :LNKRGYDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87825 # 2c1lA.146.59 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 146 :AAEMGHNIT 2c1lA 60 :HINQGGRVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87826 # 1txgA.146.18 read from T0547.t06.many.frag # found chain 1txgA in training set T0547 146 :AAEMGHNIT 1txgA 19 :LVDNGNEVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87827 # 1em8A.147.32 read from T0547.t06.many.frag # found chain 1em8A in template set Warning: unaligning (T0547)N152 (1em8A)R38 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 1em8A 33 :WRSGK T0547 153 :ITL 1em8A 39 :VLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=87829 # 2a3nA.147.125 read from T0547.t06.many.frag # found chain 2a3nA in training set T0547 147 :AEMGHNITL 2a3nA 114 :KAQGIRVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87830 # 1pgjA.147.20 read from T0547.t06.many.frag # found chain 1pgjA in template set T0547 147 :AEMGHNITL 1pgjA 21 :AEKGFKVAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87831 # 1e9rA.147.77 read from T0547.t06.many.frag # found chain 1e9rA in template set T0547 147 :AEMGHNITL 1e9rA 148 :LLRGDRMVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87832 # 1n4wA.147.24 read from T0547.t06.many.frag # found chain 1n4wA in training set T0547 147 :AEMGHNITL 1n4wA 30 :GEAGVQTLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=87833 # 1b43A.147.68 read from T0547.t06.many.frag # found chain 1b43A in template set T0547 147 :AEMGHNITL 1b43A 68 :MEAGIKPVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=87834 # 1y1pA.147.31 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)M149 (1y1pA)H35 because G (3-10) conformation "forbidden" or filtered. T0547 147 :AE 1y1pA 33 :LE T0547 150 :GHNITL 1y1pA 36 :GYKVRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=87836 # 1hdoA.147.23 read from T0547.t06.many.frag # found chain 1hdoA in training set T0547 147 :AEMGHNITL 1hdoA 24 :VQAGYEVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87837 # 1j0dA.147.88 read from T0547.t06.many.frag # found chain 1j0dA in template set T0547 147 :AEMGHNITL 1j0dA 89 :AKLGKKCVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87838 # 1nytA.147.138 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)N152 (1nytA)A144 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 1nytA 139 :LSLDC T0547 153 :ITL 1nytA 145 :VTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=87840 # 1w2wB.147.81 read from T0547.t06.many.frag # found chain 1w2wB in training set T0547 147 :AEMGHNITL 1w2wB 302 :KQFGIKFFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87841 # 1ir6A.147.29 read from T0547.t06.many.frag # found chain 1ir6A in template set Warning: unaligning (T0547)N152 (1ir6A)R74 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 1ir6A 69 :LRQGK T0547 153 :ITL 1ir6A 75 :IRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=87843 # 1ybdA.147.42 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)H151 (1ybdA)V49 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMG 1ybdA 45 :VKMG T0547 152 :NITL 1ybdA 50 :QVGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=87845 # 1wv2A.147.131 read from T0547.t06.many.frag # found chain 1wv2A in template set T0547 147 :AEMGHNITL 1wv2A 1132 :VKDGFDVMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87846 # 2bdeA.147.198 read from T0547.t06.many.frag # found chain 2bdeA in template set Warning: unaligning (T0547)H151 (2bdeA)K203 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMG 2bdeA 199 :IRYG T0547 152 :NITL 2bdeA 204 :KIFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=87848 # 1xdpA.147.388 read from T0547.t06.many.frag # found chain 1xdpA in template set Warning: unaligning (T0547)L155 (1xdpA)V398 because D (zeta) conformation "forbidden" or filtered. T0547 147 :AEMGHNIT 1xdpA 390 :AHNGKKVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=87849 # 1kjnA.147.32 read from T0547.t06.many.frag # found chain 1kjnA in template set T0547 147 :AEMGHNITL 1kjnA 33 :KKKGFRVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87850 # 1zxxA.147.112 read from T0547.t06.many.frag # found chain 1zxxA in template set T0547 147 :AEMGHNITL 1zxxA 113 :TRHGFNSIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87851 # 1i24A.147.31 read from T0547.t06.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)N152 (1i24A)E27 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 1i24A 22 :SKKNY T0547 153 :ITL 1i24A 28 :VCI Number of specific fragments extracted= 2 number of extra gaps= 1 total=87853 # 1ykjA.147.21 read from T0547.t06.many.frag # found chain 1ykjA in template set Warning: unaligning (T0547)H151 (1ykjA)I1026 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMG 1ykjA 1022 :HKAG T0547 152 :NITL 1ykjA 1027 :DNVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=87855 # 2c1lA.147.60 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 147 :AEMGHNITL 2c1lA 61 :INQGGRVIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87856 # 1yacA.147.126 read from T0547.t06.many.frag # found chain 1yacA in training set T0547 147 :AEMGHNITL 1yacA 127 :IEEGFDVFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87857 # 1vkyA.147.249 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 147 :AEMGHNITL 1vkyA 238 :RERGNRIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87858 # 2f5tX.147.45 read from T0547.t06.many.frag # found chain 2f5tX in training set Warning: unaligning (T0547)N152 (2f5tX)T160 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 2f5tX 155 :LERGV T0547 153 :ITL 2f5tX 161 :VSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=87860 # 1byrA.147.49 read from T0547.t06.many.frag # found chain 1byrA in template set T0547 147 :AEMGHNITL 1byrA 50 :KKRGVDVKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87861 # 1tt7A.147.171 read from T0547.t06.many.frag # found chain 1tt7A in template set T0547 147 :AEMGHNITL 1tt7A 172 :NKRGYDVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87862 # 1v4vA.147.87 read from T0547.t06.many.frag # found chain 1v4vA in training set T0547 147 :AEMGHNITL 1v4vA 88 :KEMGADYVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87863 # 2bzgA.147.66 read from T0547.t06.many.frag # found chain 2bzgA in template set T0547 147 :AEMGHNITL 2bzgA 80 :ADRGHSVVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87864 # 1zcjA.147.56 read from T0547.t06.many.frag # found chain 1zcjA in template set T0547 147 :AEMGHNITL 1zcjA 316 :ARVGISVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87865 # 1kjqA.147.30 read from T0547.t06.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)N152 (1kjqA)E37 because P (beta_P) conformation "forbidden" or filtered. T0547 147 :AEMGH 1kjqA 32 :QRLGV T0547 153 :ITL 1kjqA 38 :VIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87867 # 1y1pA.148.32 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)N152 (1y1pA)K38 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :EMGH 1y1pA 34 :EHGY T0547 153 :ITLT 1y1pA 39 :VRGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=87869 # 1n4wA.148.25 read from T0547.t06.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)N152 (1n4wA)Q35 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :EMGH 1n4wA 31 :EAGV T0547 153 :ITLT 1n4wA 36 :TLML Number of specific fragments extracted= 2 number of extra gaps= 1 total=87871 # 2a3nA.148.126 read from T0547.t06.many.frag # found chain 2a3nA in training set T0547 148 :EMGHNITLT 2a3nA 115 :AQGIRVVAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87872 # 1em8A.148.33 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 148 :EMGHNITLT 1em8A 34 :RSGKRVLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87873 # 1kjnA.148.33 read from T0547.t06.many.frag # found chain 1kjnA in template set T0547 148 :EMGHNITLT 1kjnA 34 :KKGFRVTVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87874 # 1e9rA.148.78 read from T0547.t06.many.frag # found chain 1e9rA in template set T0547 148 :EMGHNITLT 1e9rA 149 :LRGDRMVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87875 # 1hdoA.148.24 read from T0547.t06.many.frag # found chain 1hdoA in training set T0547 148 :EMGHNITLT 1hdoA 25 :QAGYEVTVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87876 # 2bzgA.148.67 read from T0547.t06.many.frag # found chain 2bzgA in template set T0547 148 :EMGHNITLT 2bzgA 81 :DRGHSVVGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87877 # 1ywfA.148.65 read from T0547.t06.many.frag # found chain 1ywfA in template set T0547 148 :EMGHNITLT 1ywfA 46 :RLGITDVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=87878 # 1nytA.148.139 read from T0547.t06.many.frag # found chain 1nytA in training set T0547 148 :EMGHNITLT 1nytA 140 :SLDCAVTIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87879 # 1nmoA.148.53 read from T0547.t06.many.frag # found chain 1nmoA in template set T0547 148 :EMGHNITLT 1nmoA 54 :RLGADAVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87880 # 1pgjA.148.21 read from T0547.t06.many.frag # found chain 1pgjA in template set T0547 148 :EMGHNITLT 1pgjA 22 :EKGFKVAVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=87881 # 1ybdA.148.43 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)H151 (1ybdA)V49 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :EMG 1ybdA 46 :KMG T0547 152 :NITLT 1ybdA 50 :QVGIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=87883 # 1yz4A.148.30 read from T0547.t06.many.frag # found chain 1yz4A in template set Warning: unaligning (T0547)N152 (1yz4A)T32 because G (3-10) conformation "forbidden" or filtered. T0547 148 :EMGH 1yz4A 28 :RNKI T0547 153 :ITLT 1yz4A 33 :HIIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=87885 # 1tt7A.148.172 read from T0547.t06.many.frag # found chain 1tt7A in template set T0547 148 :EMGHNITLT 1tt7A 173 :KRGYDVVAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87886 # 1zcjA.148.57 read from T0547.t06.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)M149 (1zcjA)V318 because G (3-10) conformation "forbidden" or filtered. T0547 148 :E 1zcjA 317 :R T0547 150 :GHNITLT 1zcjA 319 :GISVVAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=87888 # 1j0dA.148.89 read from T0547.t06.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)M149 (1j0dA)L91 because G (3-10) conformation "forbidden" or filtered. T0547 148 :E 1j0dA 90 :K T0547 150 :GHNITLT 1j0dA 92 :GKKCVLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=87890 # 1c1dA.148.195 read from T0547.t06.many.frag # found chain 1c1dA in training set T0547 148 :EMGHNITLT 1c1dA 196 :EAGAQLLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87891 # 1rqbA.148.127 read from T0547.t06.many.frag # found chain 1rqbA in template set T0547 148 :EMGHNITLT 1rqbA 117 :ENGMDVFRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87892 # 1ykjA.148.22 read from T0547.t06.many.frag # found chain 1ykjA in template set T0547 148 :EMGHNITLT 1ykjA 1023 :KAGIDNVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87893 # 1xdpA.148.389 read from T0547.t06.many.frag # found chain 1xdpA in template set T0547 148 :EMGHNITLT 1xdpA 391 :HNGKKVTVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87894 # 2bdeA.148.199 read from T0547.t06.many.frag # found chain 2bdeA in template set Warning: unaligning (T0547)H151 (2bdeA)K203 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :EMG 2bdeA 200 :RYG T0547 152 :NITLT 2bdeA 204 :KIFIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=87896 # 1wv2A.148.132 read from T0547.t06.many.frag # found chain 1wv2A in template set T0547 148 :EMGHNITLT 1wv2A 1133 :KDGFDVMVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=87897 # 1gesA.148.24 read from T0547.t06.many.frag # found chain 1gesA in template set T0547 148 :EMGHNITLT 1gesA 25 :MYGQKCALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87898 # 2f46A.148.39 read from T0547.t06.many.frag # found chain 2f46A in training set T0547 148 :EMGHNITLT 2f46A 39 :QLGIKTIIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=87899 # 1cnv.148.73 read from T0547.t06.many.frag # found chain 1cnv in training set T0547 148 :EMGHNITLT 1cnv 74 :RMGVKVFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87900 # 1b43A.148.69 read from T0547.t06.many.frag # found chain 1b43A in template set T0547 148 :EMGHNITLT 1b43A 69 :EAGIKPVYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87901 # 1p4cA.148.146 read from T0547.t06.many.frag # found chain 1p4cA in training set T0547 148 :EMGHNITLT 1p4cA 147 :HTGYTTLVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87902 # 1z5zA.148.109 read from T0547.t06.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)N152 (1z5zA)K749 because P (beta_P) conformation "forbidden" or filtered. T0547 148 :EMGH 1z5zA 745 :DEGD T0547 153 :ITLT 1z5zA 750 :IAIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=87904 # 1kjqA.148.31 read from T0547.t06.many.frag # found chain 1kjqA in training set T0547 148 :EMGHNITLT 1kjqA 33 :RLGVEVIAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87905 # 1em8A.149.34 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 149 :MGHNITLTI 1em8A 35 :SGKRVLIAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=87906 # 2a3nA.149.127 read from T0547.t06.many.frag # found chain 2a3nA in training set Warning: unaligning (T0547)N152 (2a3nA)R119 because P (beta_P) conformation "forbidden" or filtered. T0547 149 :MGH 2a3nA 116 :QGI T0547 153 :ITLTI 2a3nA 120 :VVAIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=87908 # 1e9rA.149.79 read from T0547.t06.many.frag # found chain 1e9rA in template set T0547 149 :MGHNITLTI 1e9rA 150 :RGDRMVIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=87909 # 1hdoA.149.25 read from T0547.t06.many.frag # found chain 1hdoA in training set T0547 149 :MGHNITLTI 1hdoA 26 :AGYEVTVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87910 # 1tt7A.149.173 read from T0547.t06.many.frag # found chain 1tt7A in template set T0547 149 :MGHNITLTI 1tt7A 174 :RGYDVVAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=87911 # 1gu7A.149.190 read from T0547.t06.many.frag # found chain 1gu7A in training set T0547 149 :MGHNITLTI 1gu7A 213 :LNFNSISVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87912 # 1v4vA.149.89 read from T0547.t06.many.frag # found chain 1v4vA in training set T0547 149 :MGHNITLTI 1v4vA 90 :MGADYVLVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=87913 # 1rqbA.149.128 read from T0547.t06.many.frag # found chain 1rqbA in template set T0547 149 :MGHNITLTI 1rqbA 118 :NGMDVFRVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=87914 # 1xeaA.149.61 read from T0547.t06.many.frag # found chain 1xeaA in template set Warning: unaligning (T0547)L155 (1xeaA)M68 because D (zeta) conformation "forbidden" or filtered. T0547 149 :MGHNIT 1xeaA 62 :YGVDAV T0547 156 :TI 1xeaA 69 :IH Number of specific fragments extracted= 2 number of extra gaps= 1 total=87916 # 1kjnA.149.34 read from T0547.t06.many.frag # found chain 1kjnA in template set T0547 149 :MGHNITLTI 1kjnA 35 :KGFRVTVTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87917 # 1yz4A.149.31 read from T0547.t06.many.frag # found chain 1yz4A in template set T0547 149 :MGHNITLTI 1yz4A 29 :NKITHIISI Number of specific fragments extracted= 1 number of extra gaps= 0 total=87918 # 1wuiS.149.65 read from T0547.t06.many.frag # found chain 1wuiS in training set T0547 149 :MGHNITLTI 1wuiS 66 :SPHGFIAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87919 # 1zcjA.149.58 read from T0547.t06.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)H151 (1zcjA)I320 because P (beta_P) conformation "forbidden" or filtered. T0547 149 :MG 1zcjA 318 :VG T0547 152 :NITLTI 1zcjA 321 :SVVAVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=87921 # 1ywfA.149.66 read from T0547.t06.many.frag # found chain 1ywfA in template set Warning: unaligning (T0547)I157 (1ywfA)L55 because G (3-10) conformation "forbidden" or filtered. T0547 149 :MGHNITLT 1ywfA 47 :LGITDVAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=87922 # 1c1dA.149.196 read from T0547.t06.many.frag # found chain 1c1dA in training set Warning: unaligning (T0547)N152 (1c1dA)Q200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I157 (1c1dA)D205 because Y (epsilon') conformation "forbidden" or filtered. T0547 149 :MGH 1c1dA 197 :AGA T0547 153 :ITLT 1c1dA 201 :LLVA Number of specific fragments extracted= 2 number of extra gaps= 2 total=87924 # 1z5zA.149.110 read from T0547.t06.many.frag # found chain 1z5zA in template set T0547 149 :MGHNITLTI 1z5zA 746 :EGDKIAIFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=87925 # 1gesA.149.25 read from T0547.t06.many.frag # found chain 1gesA in template set T0547 149 :MGHNITLTI 1gesA 26 :YGQKCALIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87926 # 1u5hA.149.102 read from T0547.t06.many.frag # found chain 1u5hA in template set Warning: unaligning (T0547)G150 (1u5hA)P104 because C (cis) conformation "forbidden" or filtered. T0547 149 :M 1u5hA 103 :A T0547 151 :HNITLTI 1u5hA 105 :RDVIALV Number of specific fragments extracted= 2 number of extra gaps= 1 total=87928 # 1l1eA.149.85 read from T0547.t06.many.frag # found chain 1l1eA in template set Warning: unaligning (T0547)M149 (1l1eA)Y86 because G (3-10) conformation "forbidden" or filtered. T0547 150 :GHNITLTI 1l1eA 87 :DVNVVGLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=87929 # 1yzhA.149.63 read from T0547.t06.many.frag # found chain 1yzhA in template set Warning: unaligning (T0547)G150 (1yzhA)D62 because G (3-10) conformation "forbidden" or filtered. T0547 149 :M 1yzhA 61 :P T0547 151 :HNITLTI 1yzhA 63 :INYIGID Number of specific fragments extracted= 2 number of extra gaps= 1 total=87931 # 1pii.149.155 read from T0547.t06.many.frag # found chain 1pii in template set T0547 149 :MGHNITLTI 1pii 156 :LEMGVLTEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87932 # 1srvA.149.51 read from T0547.t06.many.frag # found chain 1srvA in template set T0547 149 :MGHNITLTI 1srvA 243 :TGKPLLIIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87933 # 1y1pA.149.33 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)N152 (1y1pA)K38 because P (beta_P) conformation "forbidden" or filtered. T0547 149 :MGH 1y1pA 35 :HGY T0547 153 :ITLTI 1y1pA 39 :VRGTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87935 # 1ybdA.149.44 read from T0547.t06.many.frag # found chain 1ybdA in template set T0547 149 :MGHNITLTI 1ybdA 47 :MGVQVGIVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87936 # 1nytA.149.140 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)N152 (1nytA)A144 because P (beta_P) conformation "forbidden" or filtered. T0547 149 :MGH 1nytA 141 :LDC T0547 153 :ITLTI 1nytA 145 :VTITN Number of specific fragments extracted= 2 number of extra gaps= 1 total=87938 # 1j0dA.149.90 read from T0547.t06.many.frag # found chain 1j0dA in template set T0547 149 :MGHNITLTI 1j0dA 91 :LGKKCVLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=87939 # 1oxxK.149.189 read from T0547.t06.many.frag # found chain 1oxxK in training set T0547 149 :MGHNITLTI 1oxxK 190 :LGVTLLVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87940 # 1xdpA.149.390 read from T0547.t06.many.frag # found chain 1xdpA in template set T0547 149 :MGHNITLTI 1xdpA 392 :NGKKVTVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=87941 # 2bzgA.149.68 read from T0547.t06.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)M149 (2bzgA)R82 because G (3-10) conformation "forbidden" or filtered. T0547 150 :GHNITLTI 2bzgA 83 :GHSVVGVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=87942 # 1kjqA.149.32 read from T0547.t06.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)M149 (1kjqA)L34 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I157 (1kjqA)D42 because Y (epsilon') conformation "forbidden" or filtered. T0547 150 :GHNITLT 1kjqA 35 :GVEVIAV Number of specific fragments extracted= 1 number of extra gaps= 2 total=87943 # 1hdoA.150.26 read from T0547.t06.many.frag # found chain 1hdoA in training set T0547 150 :GHNITLTIE 1hdoA 27 :GYEVTVLVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87944 # 1gu7A.150.191 read from T0547.t06.many.frag # found chain 1gu7A in training set T0547 150 :GHNITLTIE 1gu7A 214 :NFNSISVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87945 # 1e9rA.150.80 read from T0547.t06.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)H151 (1e9rA)D152 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :G 1e9rA 151 :G T0547 152 :NITLTIE 1e9rA 153 :RMVIVDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=87947 # 2a3nA.150.128 read from T0547.t06.many.frag # found chain 2a3nA in training set T0547 150 :GHNITLTIE 2a3nA 117 :GIRVVAITK Number of specific fragments extracted= 1 number of extra gaps= 0 total=87948 # 1tt7A.150.174 read from T0547.t06.many.frag # found chain 1tt7A in template set T0547 150 :GHNITLTIE 1tt7A 175 :GYDVVASTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87949 # 1em8A.150.35 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 150 :GHNITLTIE 1em8A 36 :GKRVLIACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87950 # 1v4vA.150.90 read from T0547.t06.many.frag # found chain 1v4vA in training set T0547 150 :GHNITLTIE 1v4vA 91 :GADYVLVHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87951 # 1pii.150.156 read from T0547.t06.many.frag # found chain 1pii in template set T0547 150 :GHNITLTIE 1pii 157 :EMGVLTEVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=87952 # 1u5hA.150.103 read from T0547.t06.many.frag # found chain 1u5hA in template set Warning: unaligning (T0547)G150 (1u5hA)P104 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)N152 (1u5hA)D106 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :H 1u5hA 105 :R T0547 153 :ITLTIE 1u5hA 107 :VIALVE Number of specific fragments extracted= 2 number of extra gaps= 2 total=87954 # 2ak3A.150.105 read from T0547.t06.many.frag # found chain 2ak3A in template set Warning: unaligning (T0547)G150 (2ak3A)Q105 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :HNITLTIE 2ak3A 106 :IDTVINLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=87955 # 1ybdA.150.45 read from T0547.t06.many.frag # found chain 1ybdA in template set T0547 150 :GHNITLTIE 1ybdA 48 :GVQVGIVVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=87956 # 1tf5A.150.123 read from T0547.t06.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)N152 (1tf5A)G123 because S (epsilon) conformation "forbidden" or filtered. T0547 150 :GH 1tf5A 121 :GK T0547 153 :ITLTIE 1tf5A 124 :VHVVTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=87958 # 1oxxK.150.190 read from T0547.t06.many.frag # found chain 1oxxK in training set T0547 150 :GHNITLTIE 1oxxK 191 :GVTLLVVSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=87959 # 1y1pA.150.34 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)N152 (1y1pA)K38 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :GH 1y1pA 36 :GY T0547 153 :ITLTIE 1y1pA 39 :VRGTAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=87961 # 1wuiS.150.66 read from T0547.t06.many.frag # found chain 1wuiS in training set Warning: unaligning (T0547)H151 (1wuiS)H68 because H (helix) conformation "forbidden" or filtered. T0547 150 :G 1wuiS 67 :P T0547 152 :NITLTIE 1wuiS 69 :GFIAVVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=87963 # 1l1eA.150.86 read from T0547.t06.many.frag # found chain 1l1eA in template set T0547 150 :GHNITLTIE 1l1eA 87 :DVNVVGLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=87964 # 1nytA.150.141 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)N152 (1nytA)A144 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I157 (1nytA)N149 because Y (epsilon') conformation "forbidden" or filtered. T0547 150 :GH 1nytA 142 :DC T0547 153 :ITLT 1nytA 145 :VTIT T0547 158 :E 1nytA 150 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=87967 # 1kjnA.150.35 read from T0547.t06.many.frag # found chain 1kjnA in template set Warning: unaligning (T0547)N152 (1kjnA)R38 because E (beta_S) conformation "forbidden" or filtered. T0547 150 :GH 1kjnA 36 :GF T0547 153 :ITLTIE 1kjnA 39 :VTVTAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=87969 # 1z5zA.150.111 read from T0547.t06.many.frag # found chain 1z5zA in template set T0547 150 :GHNITLTIE 1z5zA 747 :GDKIAIFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=87970 # 1zcjA.150.59 read from T0547.t06.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)T154 (1zcjA)V323 because D (zeta) conformation "forbidden" or filtered. T0547 150 :GHNI 1zcjA 319 :GISV T0547 155 :LTIE 1zcjA 324 :AVES Number of specific fragments extracted= 2 number of extra gaps= 1 total=87972 # 1lyvA.150.115 read from T0547.t06.many.frag # found chain 1lyvA in training set T0547 150 :GHNITLTIE 1lyvA 278 :RTPVLAVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=87973 # 1c1dA.150.197 read from T0547.t06.many.frag # found chain 1c1dA in training set Warning: unaligning (T0547)H151 (1c1dA)A199 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :G 1c1dA 198 :G T0547 152 :NITLTIE 1c1dA 200 :QLLVADT Number of specific fragments extracted= 2 number of extra gaps= 1 total=87975 # 1srvA.150.52 read from T0547.t06.many.frag # found chain 1srvA in template set T0547 150 :GHNITLTIE 1srvA 244 :GKPLLIIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=87976 # 1rifA.150.156 read from T0547.t06.many.frag # found chain 1rifA in template set T0547 150 :GHNITLTIE 1rifA 157 :EGKILIIVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=87977 # 1zk4A.150.29 read from T0547.t06.many.frag # found chain 1zk4A in training set T0547 150 :GHNITLTIE 1zk4A 30 :GAKVMITGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=87978 # 2b7nA.150.181 read from T0547.t06.many.frag # found chain 2b7nA in template set Warning: unaligning (T0547)G150 (2b7nA)T182 because G (3-10) conformation "forbidden" or filtered. T0547 151 :HNITLTIE 2b7nA 183 :AKIEIECE Number of specific fragments extracted= 1 number of extra gaps= 1 total=87979 # 1gesA.150.26 read from T0547.t06.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)N152 (1gesA)K29 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :GH 1gesA 27 :GQ T0547 153 :ITLTIE 1gesA 30 :CALIEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=87981 # 1o66A.150.107 read from T0547.t06.many.frag # found chain 1o66A in training set Warning: unaligning (T0547)E158 (1o66A)G114 because Y (epsilon') conformation "forbidden" or filtered. T0547 150 :GHNITLTI 1o66A 106 :GAHMVKLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=87982 # 2btoA.150.198 read from T0547.t06.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)I153 (2btoA)A202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E158 (2btoA)D207 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :GHN 2btoA 199 :SAD T0547 154 :TLTI 2btoA 203 :CLIF Number of specific fragments extracted= 2 number of extra gaps= 2 total=87984 # 1xeaA.150.62 read from T0547.t06.many.frag # found chain 1xeaA in template set Warning: unaligning (T0547)E158 (1xeaA)A71 because P (beta_P) conformation "forbidden" or filtered. T0547 150 :GHNITLTI 1xeaA 63 :GVDAVMIH Number of specific fragments extracted= 1 number of extra gaps= 1 total=87985 # 1gu7A.151.192 read from T0547.t06.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)N152 (1gu7A)N216 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1gu7A)D223 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :H 1gu7A 215 :F T0547 153 :ITLTIE 1gu7A 217 :SISVIR Number of specific fragments extracted= 2 number of extra gaps= 2 total=87987 # 1oxxK.151.191 read from T0547.t06.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)G159 (1oxxK)D200 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1oxxK 192 :VTLLVVSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=87988 # 1hdoA.151.27 read from T0547.t06.many.frag # found chain 1hdoA in training set Warning: unaligning (T0547)G159 (1hdoA)D36 because D (zeta) conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1hdoA 28 :YEVTVLVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=87989 # 1em8A.151.36 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 151 :HNITLTIEG 1em8A 37 :KRVLIACED Number of specific fragments extracted= 1 number of extra gaps= 0 total=87990 # 1y1pA.151.35 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G159 (1y1pA)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 151 :HNITLTIE 1y1pA 37 :YKVRGTAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=87991 # 1e9rA.151.81 read from T0547.t06.many.frag # found chain 1e9rA in template set T0547 151 :HNITLTIEG 1e9rA 152 :DRMVIVDPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=87992 # 1v4vA.151.91 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)E158 (1v4vA)G99 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1v4vA)D100 because G (3-10) conformation "forbidden" or filtered. T0547 151 :HNITLTI 1v4vA 92 :ADYVLVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=87993 # 1u5hA.151.104 read from T0547.t06.many.frag # found chain 1u5hA in template set T0547 151 :HNITLTIEG 1u5hA 105 :RDVIALVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=87994 # 1tt7A.151.175 read from T0547.t06.many.frag # found chain 1tt7A in template set Warning: unaligning (T0547)T154 (1tt7A)V179 because D (zeta) conformation "forbidden" or filtered. T0547 151 :HNI 1tt7A 176 :YDV T0547 155 :LTIEG 1tt7A 180 :ASTGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=87996 # 1rifA.151.157 read from T0547.t06.many.frag # found chain 1rifA in template set Warning: unaligning (T0547)N152 (1rifA)K159 because E (beta_S) conformation "forbidden" or filtered. T0547 151 :H 1rifA 158 :G T0547 153 :ITLTIEG 1rifA 160 :ILIIVPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=87998 # 1pii.151.157 read from T0547.t06.many.frag # found chain 1pii in template set T0547 151 :HNITLTIEG 1pii 158 :MGVLTEVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=87999 # 2a3nA.151.129 read from T0547.t06.many.frag # found chain 2a3nA in training set Warning: unaligning (T0547)N152 (2a3nA)R119 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I157 (2a3nA)T124 because Y (epsilon') conformation "forbidden" or filtered. T0547 151 :H 2a3nA 118 :I T0547 153 :ITLT 2a3nA 120 :VVAI T0547 158 :EG 2a3nA 125 :KN Number of specific fragments extracted= 3 number of extra gaps= 2 total=88002 # 1nytA.151.142 read from T0547.t06.many.frag # found chain 1nytA in training set T0547 151 :HNITLTIEG 1nytA 143 :CAVTITNRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=88003 # 1z5zA.151.112 read from T0547.t06.many.frag # found chain 1z5zA in template set T0547 151 :HNITLTIEG 1z5zA 748 :DKIAIFTQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=88004 # 1y5mA.151.42 read from T0547.t06.many.frag # found chain 1y5mA in template set T0547 151 :HNITLTIEG 1y5mA 59 :AHVVLTARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88005 # 1tf5A.151.124 read from T0547.t06.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)N152 (1tf5A)G123 because S (epsilon) conformation "forbidden" or filtered. T0547 151 :H 1tf5A 122 :K T0547 153 :ITLTIEG 1tf5A 124 :VHVVTVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=88007 # 1nv8A.151.146 read from T0547.t06.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)H151 (1nv8A)A145 because P (beta_P) conformation "forbidden" or filtered. T0547 152 :NITLTIEG 1nv8A 146 :IVFATDVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=88008 # 1zcjA.151.60 read from T0547.t06.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)N152 (1zcjA)S321 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1zcjA)D328 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :H 1zcjA 320 :I T0547 153 :ITLTIE 1zcjA 322 :VVAVES Number of specific fragments extracted= 2 number of extra gaps= 2 total=88010 # 1q0uA.151.72 read from T0547.t06.many.frag # found chain 1q0uA in template set T0547 151 :HNITLTIEG 1q0uA 73 :VQAVITAPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=88011 # 1l1eA.151.87 read from T0547.t06.many.frag # found chain 1l1eA in template set T0547 151 :HNITLTIEG 1l1eA 88 :VNVVGLTLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88012 # 1zk4A.151.30 read from T0547.t06.many.frag # found chain 1zk4A in training set Warning: unaligning (T0547)N152 (1zk4A)K32 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :H 1zk4A 31 :A T0547 153 :ITLTIEG 1zk4A 33 :VMITGRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=88014 # 1lyvA.151.116 read from T0547.t06.many.frag # found chain 1lyvA in training set T0547 151 :HNITLTIEG 1lyvA 279 :TPVLAVLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88015 # 1yt8A.151.186 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)I157 (1yt8A)C193 because Y (epsilon') conformation "forbidden" or filtered. T0547 151 :HNITLT 1yt8A 187 :TRVIVN T0547 158 :EG 1yt8A 194 :AG Number of specific fragments extracted= 2 number of extra gaps= 1 total=88017 # 1ybdA.151.46 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)E158 (1ybdA)G56 because P (beta_P) conformation "forbidden" or filtered. T0547 151 :HNITLTI 1ybdA 49 :VQVGIVV T0547 159 :G 1ybdA 57 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=88019 # 2b7nA.151.182 read from T0547.t06.many.frag # found chain 2b7nA in template set T0547 151 :HNITLTIEG 2b7nA 183 :AKIEIECES Number of specific fragments extracted= 1 number of extra gaps= 0 total=88020 # 1o0sA.151.170 read from T0547.t06.many.frag # found chain 1o0sA in template set T0547 151 :HNITLTIEG 1o0sA 171 :VRAIVVTDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88021 # 2ak3A.151.106 read from T0547.t06.many.frag # found chain 2ak3A in template set T0547 151 :HNITLTIEG 2ak3A 106 :IDTVINLNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88022 # 1dljA.151.22 read from T0547.t06.many.frag # found chain 1dljA in training set T0547 151 :HNITLTIEG 1dljA 23 :NEVTIVDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88023 # 1srvA.151.53 read from T0547.t06.many.frag # found chain 1srvA in template set Warning: unaligning (T0547)N152 (1srvA)P246 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1srvA)D253 because Y (epsilon') conformation "forbidden" or filtered. T0547 151 :H 1srvA 245 :K T0547 153 :ITLTIE 1srvA 247 :LLIIAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=88025 # 2b9eA.151.125 read from T0547.t06.many.frag # found chain 2b9eA in training set T0547 151 :HNITLTIEG 2b9eA 252 :GKIFAFDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=88026 # 1y1pA.152.36 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G159 (1y1pA)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 152 :NITLTIE 1y1pA 38 :KVRGTAR T0547 160 :L 1y1pA 46 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=88028 # 1hdoA.152.28 read from T0547.t06.many.frag # found chain 1hdoA in training set T0547 152 :NITLTIEGL 1hdoA 29 :EVTVLVRDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88029 # 1oxxK.152.192 read from T0547.t06.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)N152 (1oxxK)T193 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIEGL 1oxxK 194 :LLVVSHDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=88030 # 2fcjA.152.4 read from T0547.t06.many.frag # found chain 2fcjA in training set T0547 152 :NITLTIEGL 2fcjA 5 :EKVIIVEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88031 # 1pii.152.158 read from T0547.t06.many.frag # found chain 1pii in template set T0547 152 :NITLTIEGL 1pii 159 :GVLTEVSNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88032 # 1em8A.152.37 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 152 :NITLTIEGL 1em8A 38 :RVLIACEDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88033 # 1u5hA.152.105 read from T0547.t06.many.frag # found chain 1u5hA in template set T0547 152 :NITLTIEGL 1u5hA 106 :DVIALVETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88034 # 1z5zA.152.113 read from T0547.t06.many.frag # found chain 1z5zA in template set T0547 152 :NITLTIEGL 1z5zA 749 :KIAIFTQFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88035 # 1gu7A.152.193 read from T0547.t06.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)E158 (1gu7A)R222 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L160 (1gu7A)R224 because Y (epsilon') conformation "forbidden" or filtered. T0547 152 :NITLTI 1gu7A 216 :NSISVI T0547 159 :G 1gu7A 223 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=88037 # 1lyvA.152.117 read from T0547.t06.many.frag # found chain 1lyvA in training set Warning: unaligning (T0547)G159 (1lyvA)S287 because P (beta_P) conformation "forbidden" or filtered. T0547 152 :NITLTIE 1lyvA 280 :PVLAVLA T0547 160 :L 1lyvA 288 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=88039 # 1q0uA.152.73 read from T0547.t06.many.frag # found chain 1q0uA in template set T0547 152 :NITLTIEGL 1q0uA 74 :QAVITAPTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88040 # 1rifA.152.158 read from T0547.t06.many.frag # found chain 1rifA in template set Warning: unaligning (T0547)G159 (1rifA)T166 because E (beta_S) conformation "forbidden" or filtered. T0547 152 :NITLTIE 1rifA 159 :KILIIVP T0547 160 :L 1rifA 167 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=88042 # 1l1eA.152.88 read from T0547.t06.many.frag # found chain 1l1eA in template set T0547 152 :NITLTIEGL 1l1eA 89 :NVVGLTLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88043 # 1tf5A.152.125 read from T0547.t06.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)G159 (1tf5A)N130 because E (beta_S) conformation "forbidden" or filtered. T0547 152 :NITLTIE 1tf5A 123 :GVHVVTV T0547 160 :L 1tf5A 131 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=88045 # 1y5mA.152.43 read from T0547.t06.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)G159 (1y5mA)S67 because P (beta_P) conformation "forbidden" or filtered. T0547 152 :NITLTIE 1y5mA 60 :HVVLTAR T0547 160 :L 1y5mA 68 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=88047 # 2b7nA.152.183 read from T0547.t06.many.frag # found chain 2b7nA in template set Warning: unaligning (T0547)N152 (2b7nA)K184 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (2b7nA)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLTIE 2b7nA 185 :IEIECE T0547 160 :L 2b7nA 192 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=88049 # 1v4vA.152.92 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)E158 (1v4vA)G99 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1v4vA)D100 because G (3-10) conformation "forbidden" or filtered. T0547 152 :NITLTI 1v4vA 93 :DYVLVH T0547 160 :L 1v4vA 101 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=88051 # 1zcjA.152.61 read from T0547.t06.many.frag # found chain 1zcjA in template set T0547 152 :NITLTIEGL 1zcjA 321 :SVVAVESDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=88052 # 1nv8A.152.147 read from T0547.t06.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)G159 (1nv8A)S153 because P (beta_P) conformation "forbidden" or filtered. T0547 152 :NITLTIE 1nv8A 146 :IVFATDV T0547 160 :L 1nv8A 154 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=88054 # 1e9rA.152.82 read from T0547.t06.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)E158 (1e9rA)P159 because P (beta_P) conformation "forbidden" or filtered. T0547 152 :NITLTI 1e9rA 153 :RMVIVD T0547 159 :GL 1e9rA 160 :NG Number of specific fragments extracted= 2 number of extra gaps= 1 total=88056 # 1tt7A.152.176 read from T0547.t06.many.frag # found chain 1tt7A in template set T0547 152 :NITLTIEGL 1tt7A 177 :DVVASTGNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88057 # 1nytA.152.143 read from T0547.t06.many.frag # found chain 1nytA in training set T0547 152 :NITLTIEGL 1nytA 144 :AVTITNRTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88058 # 2a3nA.152.130 read from T0547.t06.many.frag # found chain 2a3nA in training set Warning: unaligning (T0547)N152 (2a3nA)R119 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I157 (2a3nA)T124 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLT 2a3nA 120 :VVAI T0547 158 :EGL 2a3nA 125 :KNA Number of specific fragments extracted= 2 number of extra gaps= 2 total=88060 # 1dljA.152.23 read from T0547.t06.many.frag # found chain 1dljA in training set Warning: unaligning (T0547)G159 (1dljA)L31 because E (beta_S) conformation "forbidden" or filtered. T0547 152 :NITLTIE 1dljA 24 :EVTIVDI T0547 160 :L 1dljA 32 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=88062 # 1c4oA.152.54 read from T0547.t06.many.frag # found chain 1c4oA in template set T0547 152 :NITLTIEGL 1c4oA 56 :PALVLAPNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88063 # 2fnaA.152.171 read from T0547.t06.many.frag # found chain 2fnaA in template set Warning: unaligning (T0547)G159 (2fnaA)E178 because D (zeta) conformation "forbidden" or filtered. T0547 152 :NITLTIE 2fnaA 171 :KFIMSGS T0547 160 :L 2fnaA 179 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=88065 # 1xeaA.152.64 read from T0547.t06.many.frag # found chain 1xeaA in template set Warning: unaligning (T0547)I157 (1xeaA)H70 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1xeaA)A72 because P (beta_P) conformation "forbidden" or filtered. T0547 152 :NITLT 1xeaA 65 :DAVMI T0547 158 :E 1xeaA 71 :A T0547 160 :L 1xeaA 73 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=88068 # 1gkpA.152.177 read from T0547.t06.many.frag # found chain 1gkpA in training set Warning: unaligning (T0547)E158 (1gkpA)E185 because Y (epsilon') conformation "forbidden" or filtered. T0547 152 :NITLTI 1gkpA 179 :IVTAHC T0547 159 :GL 1gkpA 186 :NA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88070 1em8B expands to /projects/compbio/data/pdb/1em8.pdb.gz 1em8B:# 1em8B.152.12 read from T0547.t06.many.frag # adding 1em8B to template set # found chain 1em8B in template set Warning: unaligning (T0547)I157 (1em8B)A43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1em8B)D45 because D (zeta) conformation "forbidden" or filtered. T0547 152 :NITLT 1em8B 38 :RLVMV T0547 158 :E 1em8B 44 :N T0547 160 :L 1em8B 46 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=88073 # 2ahrA.152.27 read from T0547.t06.many.frag # found chain 2ahrA in template set T0547 152 :NITLTIEGL 2ahrA 25 :ELIISGSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88074 # 2fcjA.153.5 read from T0547.t06.many.frag # found chain 2fcjA in training set T0547 153 :ITLTIEGLN 2fcjA 6 :KVIIVEGRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88075 # 1hdoA.153.29 read from T0547.t06.many.frag # found chain 1hdoA in training set T0547 153 :ITLTIEGLN 1hdoA 30 :VTVLVRDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88076 # 1y1pA.153.37 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 153 :ITLTIEGLN 1y1pA 39 :VRGTARSAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88077 # 1oxxK.153.193 read from T0547.t06.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)G159 (1oxxK)D200 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1oxxK 194 :LLVVSH T0547 160 :LN 1oxxK 201 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88079 # 1em8A.153.38 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 153 :ITLTIEGLN 1em8A 39 :VLIACEDEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88080 # 1gu7A.153.194 read from T0547.t06.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)G159 (1gu7A)D223 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1gu7A 217 :SISVIR T0547 160 :LN 1gu7A 224 :RP Number of specific fragments extracted= 2 number of extra gaps= 1 total=88082 # 1rifA.153.159 read from T0547.t06.many.frag # found chain 1rifA in template set Warning: unaligning (T0547)G159 (1rifA)T166 because E (beta_S) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1rifA 160 :ILIIVP T0547 160 :LN 1rifA 167 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88084 # 1u5hA.153.106 read from T0547.t06.many.frag # found chain 1u5hA in template set T0547 153 :ITLTIEGLN 1u5hA 107 :VIALVETAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88085 # 1lyvA.153.118 read from T0547.t06.many.frag # found chain 1lyvA in training set T0547 153 :ITLTIEGLN 1lyvA 281 :VLAVLASSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88086 # 2a3nA.153.131 read from T0547.t06.many.frag # found chain 2a3nA in training set Warning: unaligning (T0547)I157 (2a3nA)T124 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLT 2a3nA 120 :VVAI T0547 158 :EGLN 2a3nA 125 :KNAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=88088 # 1l1eA.153.89 read from T0547.t06.many.frag # found chain 1l1eA in template set T0547 153 :ITLTIEGLN 1l1eA 90 :VVGLTLSEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=88089 # 1pii.153.159 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G159 (1pii)N166 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLTIE 1pii 160 :VLTEVS T0547 160 :LN 1pii 167 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=88091 # 2b4aA.153.17 read from T0547.t06.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)G159 (2b4aA)E12 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIE 2b4aA 6 :VTLVED T0547 160 :LN 2b4aA 13 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=88093 # 1zcjA.153.62 read from T0547.t06.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)G159 (1zcjA)D328 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1zcjA 322 :VVAVES T0547 160 :LN 1zcjA 329 :PK Number of specific fragments extracted= 2 number of extra gaps= 1 total=88095 # 1tt7A.153.177 read from T0547.t06.many.frag # found chain 1tt7A in template set Warning: unaligning (T0547)G159 (1tt7A)N184 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N161 (1tt7A)E186 because T (delta_L) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1tt7A 178 :VVASTG T0547 160 :L 1tt7A 185 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=88097 # 1q0uA.153.74 read from T0547.t06.many.frag # found chain 1q0uA in template set T0547 153 :ITLTIEGLN 1q0uA 75 :AVITAPTRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88098 # 1z5zA.153.114 read from T0547.t06.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)G159 (1z5zA)F756 because E (beta_S) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1z5zA 750 :IAIFTQ T0547 160 :LN 1z5zA 757 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=88100 # 1k7jA.153.64 read from T0547.t06.many.frag # found chain 1k7jA in training set T0547 153 :ITLTIEGLN 1k7jA 65 :FTLMCRDLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88101 # 1v4vA.153.93 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)E158 (1v4vA)G99 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1v4vA)D100 because G (3-10) conformation "forbidden" or filtered. T0547 153 :ITLTI 1v4vA 94 :YVLVH T0547 160 :LN 1v4vA 101 :TL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88103 # 1tf5A.153.126 read from T0547.t06.many.frag # found chain 1tf5A in template set T0547 153 :ITLTIEGLN 1tf5A 124 :VHVVTVNEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=88104 # 1y5mA.153.44 read from T0547.t06.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)G159 (1y5mA)S67 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1y5mA 61 :VVLTAR T0547 160 :LN 1y5mA 68 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=88106 # 1c4oA.153.55 read from T0547.t06.many.frag # found chain 1c4oA in template set Warning: unaligning (T0547)G159 (1c4oA)N63 because Y (epsilon') conformation "forbidden" or filtered. T0547 153 :ITLTIE 1c4oA 57 :ALVLAP T0547 160 :LN 1c4oA 64 :KI Number of specific fragments extracted= 2 number of extra gaps= 1 total=88108 # 1yzhA.153.67 read from T0547.t06.many.frag # found chain 1yzhA in template set T0547 153 :ITLTIEGLN 1yzhA 65 :YIGIDIQKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88109 # 2b7nA.153.184 read from T0547.t06.many.frag # found chain 2b7nA in template set T0547 153 :ITLTIEGLN 2b7nA 185 :IEIECESFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88110 # 1nv8A.153.148 read from T0547.t06.many.frag # found chain 1nv8A in template set T0547 153 :ITLTIEGLN 1nv8A 147 :VFATDVSSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88111 # 1ua4A.153.86 read from T0547.t06.many.frag # found chain 1ua4A in template set Warning: unaligning (T0547)G159 (1ua4A)S93 because P (beta_P) conformation "forbidden" or filtered. T0547 153 :ITLTIE 1ua4A 87 :AELFVE T0547 160 :LN 1ua4A 94 :CP Number of specific fragments extracted= 2 number of extra gaps= 1 total=88113 # 2fnaA.153.172 read from T0547.t06.many.frag # found chain 2fnaA in template set T0547 153 :ITLTIEGLN 2fnaA 172 :FIMSGSEMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88114 # 1e9rA.153.83 read from T0547.t06.many.frag # found chain 1e9rA in template set Warning: unaligning (T0547)I153 (1e9rA)M154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L160 (1e9rA)G161 because L (left) conformation "forbidden" or filtered. T0547 154 :TLTIEG 1e9rA 155 :VIVDPN T0547 161 :N 1e9rA 162 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=88116 # 1usgA.153.140 read from T0547.t06.many.frag # found chain 1usgA in training set T0547 153 :ITLTIEGLN 1usgA 141 :IAIIHDKQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88117 # 1gkpA.153.178 read from T0547.t06.many.frag # found chain 1gkpA in training set T0547 153 :ITLTIEGLN 1gkpA 180 :VTAHCENAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88118 # 1y1pA.154.38 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G159 (1y1pA)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTIE 1y1pA 40 :RGTAR T0547 160 :LNE 1y1pA 46 :ASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=88120 # 2fcjA.154.6 read from T0547.t06.many.frag # found chain 2fcjA in training set Warning: unaligning (T0547)G159 (2fcjA)G12 because E (beta_S) conformation "forbidden" or filtered. T0547 154 :TLTIE 2fcjA 7 :VIIVE T0547 160 :LNE 2fcjA 13 :RSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=88122 # 1pii.154.160 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G159 (1pii)N166 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTIE 1pii 161 :LTEVS T0547 160 :LNE 1pii 167 :EEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=88124 # 1hdoA.154.30 read from T0547.t06.many.frag # found chain 1hdoA in training set T0547 154 :TLTIEGLNE 1hdoA 31 :TVLVRDSSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88125 # 1rifA.154.160 read from T0547.t06.many.frag # found chain 1rifA in template set T0547 154 :TLTIEGLNE 1rifA 161 :LIIVPTTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88126 # 1ct5A.154.109 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G159 (1ct5A)S116 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTIE 1ct5A 111 :VETID T0547 160 :LNE 1ct5A 117 :LKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=88128 # 1em8A.154.39 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 154 :TLTIEGLNE 1em8A 40 :LIACEDEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88129 # 1u5hA.154.107 read from T0547.t06.many.frag # found chain 1u5hA in template set T0547 154 :TLTIEGLNE 1u5hA 108 :IALVETARG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88130 # 1k7jA.154.65 read from T0547.t06.many.frag # found chain 1k7jA in training set T0547 154 :TLTIEGLNE 1k7jA 66 :TLMCRDLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88131 # 2b7nA.154.185 read from T0547.t06.many.frag # found chain 2b7nA in template set T0547 154 :TLTIEGLNE 2b7nA 186 :EIECESFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88132 # 1wiwA.154.217 read from T0547.t06.many.frag # found chain 1wiwA in template set Warning: unaligning (T0547)E158 (1wiwA)G222 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1wiwA)P223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L160 (1wiwA)G224 because S (epsilon) conformation "forbidden" or filtered. T0547 154 :TLTI 1wiwA 218 :AVLL T0547 161 :NE 1wiwA 225 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=88134 # 1wbhA.154.112 read from T0547.t06.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)G159 (1wbhA)T117 because E (beta_S) conformation "forbidden" or filtered. T0547 154 :TLTIE 1wbhA 112 :IPGIS T0547 160 :LNE 1wbhA 118 :VSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=88136 # 1l1eA.154.90 read from T0547.t06.many.frag # found chain 1l1eA in template set Warning: unaligning (T0547)G159 (1l1eA)S96 because P (beta_P) conformation "forbidden" or filtered. T0547 154 :TLTIE 1l1eA 91 :VGLTL T0547 160 :LNE 1l1eA 97 :ENQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=88138 # 1y5mA.154.45 read from T0547.t06.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)G159 (1y5mA)S67 because P (beta_P) conformation "forbidden" or filtered. T0547 154 :TLTIE 1y5mA 62 :VLTAR T0547 160 :LNE 1y5mA 68 :EEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=88140 # 1oxxK.154.194 read from T0547.t06.many.frag # found chain 1oxxK in training set T0547 154 :TLTIEGLNE 1oxxK 195 :LVVSHDPAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=88141 # 1lyvA.154.119 read from T0547.t06.many.frag # found chain 1lyvA in training set Warning: unaligning (T0547)G159 (1lyvA)S287 because P (beta_P) conformation "forbidden" or filtered. T0547 154 :TLTIE 1lyvA 282 :LAVLA T0547 160 :LNE 1lyvA 288 :SSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=88143 # 2b4aA.154.18 read from T0547.t06.many.frag # found chain 2b4aA in template set T0547 154 :TLTIEGLNE 2b4aA 7 :TLVEDEPSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=88144 # 1gu7A.154.195 read from T0547.t06.many.frag # found chain 1gu7A in training set Warning: unaligning (T0547)E158 (1gu7A)R222 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1gu7A)D223 because P (beta_P) conformation "forbidden" or filtered. T0547 154 :TLTI 1gu7A 218 :ISVI T0547 160 :LNE 1gu7A 224 :RPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=88146 # 1jqnA.154.501 read from T0547.t06.many.frag # found chain 1jqnA in template set T0547 154 :TLTIEGLNE 1jqnA 502 :APLFETLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=88147 # 1ua4A.154.87 read from T0547.t06.many.frag # found chain 1ua4A in template set T0547 154 :TLTIEGLNE 1ua4A 88 :ELFVESCPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88148 # 1v4vA.154.94 read from T0547.t06.many.frag # found chain 1v4vA in training set T0547 154 :TLTIEGLNE 1v4vA 95 :VLVHGDTLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=88149 # 1q0uA.154.75 read from T0547.t06.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)G159 (1q0uA)T81 because E (beta_S) conformation "forbidden" or filtered. T0547 154 :TLTIE 1q0uA 76 :VITAP T0547 160 :LNE 1q0uA 82 :REL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88151 # 1rjdA.154.123 read from T0547.t06.many.frag # found chain 1rjdA in training set Warning: unaligning (T0547)E158 (1rjdA)D128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1rjdA)Y129 because P (beta_P) conformation "forbidden" or filtered. T0547 154 :TLTI 1rjdA 124 :YVDI T0547 160 :LNE 1rjdA 130 :NES Number of specific fragments extracted= 2 number of extra gaps= 1 total=88153 # 1zcjA.154.63 read from T0547.t06.many.frag # found chain 1zcjA in template set T0547 154 :TLTIEGLNE 1zcjA 323 :VAVESDPKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88154 # 1nv8A.154.149 read from T0547.t06.many.frag # found chain 1nv8A in template set T0547 154 :TLTIEGLNE 1nv8A 148 :FATDVSSKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88155 # 1gkpA.154.179 read from T0547.t06.many.frag # found chain 1gkpA in training set Warning: unaligning (T0547)G159 (1gkpA)N186 because E (beta_S) conformation "forbidden" or filtered. T0547 154 :TLTIE 1gkpA 181 :TAHCE T0547 160 :LNE 1gkpA 187 :AEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88157 # 1vd6A.154.125 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 154 :TLTIEGLNE 1vd6A 126 :WVSSFDPLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88158 # 1yzhA.154.68 read from T0547.t06.many.frag # found chain 1yzhA in template set Warning: unaligning (T0547)G159 (1yzhA)Q71 because E (beta_S) conformation "forbidden" or filtered. T0547 154 :TLTIE 1yzhA 66 :IGIDI T0547 160 :LNE 1yzhA 72 :KSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=88160 # 2carA.154.12 read from T0547.t06.many.frag # found chain 2carA in training set Warning: unaligning (T0547)G159 (2carA)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 154 :TLTIE 2carA 11 :VFVTG T0547 160 :LNE 2carA 17 :AKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=88162 # 1usgA.154.141 read from T0547.t06.many.frag # found chain 1usgA in training set T0547 154 :TLTIEGLNE 1usgA 142 :AIIHDKQQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=88163 # 1ct5A.155.110 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G159 (1ct5A)S116 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LTIE 1ct5A 112 :ETID T0547 160 :LNEL 1ct5A 117 :LKKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88165 # 2b7nA.155.186 read from T0547.t06.many.frag # found chain 2b7nA in template set T0547 155 :LTIEGLNEL 2b7nA 187 :IECESFEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88166 # 1y1pA.155.39 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G159 (1y1pA)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LTIE 1y1pA 41 :GTAR T0547 160 :LNEL 1y1pA 46 :ASKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88168 # 1em8A.155.40 read from T0547.t06.many.frag # found chain 1em8A in template set Warning: unaligning (T0547)G159 (1em8A)D45 because E (beta_S) conformation "forbidden" or filtered. T0547 155 :LTIE 1em8A 41 :IACE T0547 160 :LNEL 1em8A 46 :EKQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88170 # 1k7jA.155.66 read from T0547.t06.many.frag # found chain 1k7jA in training set Warning: unaligning (T0547)G159 (1k7jA)D71 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LTIE 1k7jA 67 :LMCR T0547 160 :LNEL 1k7jA 72 :LSEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88172 # 2b4aA.155.19 read from T0547.t06.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)G159 (2b4aA)E12 because P (beta_P) conformation "forbidden" or filtered. T0547 155 :LTIE 2b4aA 8 :LVED T0547 160 :LNEL 2b4aA 13 :PSHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88174 # 1oxxK.155.195 read from T0547.t06.many.frag # found chain 1oxxK in training set Warning: unaligning (T0547)G159 (1oxxK)D200 because P (beta_P) conformation "forbidden" or filtered. T0547 155 :LTIE 1oxxK 196 :VVSH T0547 160 :LNEL 1oxxK 201 :PADI Number of specific fragments extracted= 2 number of extra gaps= 1 total=88176 # 1y5mA.155.46 read from T0547.t06.many.frag # found chain 1y5mA in template set T0547 155 :LTIEGLNEL 1y5mA 63 :LTARSEEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88177 # 1rifA.155.161 read from T0547.t06.many.frag # found chain 1rifA in template set T0547 155 :LTIEGLNEL 1rifA 162 :IIVPTTALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=88178 # 1wbhA.155.113 read from T0547.t06.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)G159 (1wbhA)T117 because E (beta_S) conformation "forbidden" or filtered. T0547 155 :LTIE 1wbhA 113 :PGIS T0547 160 :LNEL 1wbhA 118 :VSEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88180 # 1zcjA.155.64 read from T0547.t06.many.frag # found chain 1zcjA in template set T0547 155 :LTIEGLNEL 1zcjA 324 :AVESDPKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88181 # 1knwA.155.118 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 155 :LTIEGLNEL 1knwA 119 :VNAGSVDML Number of specific fragments extracted= 1 number of extra gaps= 0 total=88182 # 1vd6A.155.126 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)G159 (1vd6A)D131 because N (gamma') conformation "forbidden" or filtered. T0547 155 :LTIE 1vd6A 127 :VSSF T0547 160 :LNEL 1vd6A 132 :PLAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88184 # 1gxjA.155.60 read from T0547.t06.many.frag # found chain 1gxjA in template set T0547 155 :LTIEGLNEL 1gxjA 545 :IVVRNVDTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88185 # 7odcA.155.130 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 155 :LTIEGLNEL 7odcA 131 :MTFDSEIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88186 # 1jqnA.155.502 read from T0547.t06.many.frag # found chain 1jqnA in template set T0547 155 :LTIEGLNEL 1jqnA 503 :PLFETLDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88187 # 1ua4A.155.88 read from T0547.t06.many.frag # found chain 1ua4A in template set T0547 155 :LTIEGLNEL 1ua4A 89 :LFVESCPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88188 # 2fnaA.155.174 read from T0547.t06.many.frag # found chain 2fnaA in template set Warning: unaligning (T0547)G159 (2fnaA)E178 because D (zeta) conformation "forbidden" or filtered. T0547 155 :LTIE 2fnaA 174 :MSGS T0547 160 :LNEL 2fnaA 179 :MGLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88190 # 1q0uA.155.76 read from T0547.t06.many.frag # found chain 1q0uA in template set T0547 155 :LTIEGLNEL 1q0uA 77 :ITAPTRELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88191 # 1wn2A.155.59 read from T0547.t06.many.frag # found chain 1wn2A in training set Warning: unaligning (T0547)G159 (1wn2A)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LTIE 1wn2A 60 :VKVE T0547 160 :LNEL 1wn2A 65 :EEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88193 # 1nytA.155.146 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)I157 (1nytA)N149 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LT 1nytA 147 :IT T0547 158 :EGLNEL 1nytA 150 :RTVSRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88195 # 1l1eA.155.91 read from T0547.t06.many.frag # found chain 1l1eA in template set T0547 155 :LTIEGLNEL 1l1eA 92 :GLTLSENQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88196 # 1pii.155.161 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G159 (1pii)N166 because Y (epsilon') conformation "forbidden" or filtered. T0547 155 :LTIE 1pii 162 :TEVS T0547 160 :LNEL 1pii 167 :EEEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=88198 # 2fcjA.155.7 read from T0547.t06.many.frag # found chain 2fcjA in training set T0547 155 :LTIEGLNEL 2fcjA 8 :IIVEGRSDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88199 # 1gkpA.155.180 read from T0547.t06.many.frag # found chain 1gkpA in training set T0547 155 :LTIEGLNEL 1gkpA 182 :AHCENAELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88200 # 1rjdA.155.124 read from T0547.t06.many.frag # found chain 1rjdA in training set T0547 155 :LTIEGLNEL 1rjdA 125 :VDIDYNESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88201 # 2bz1A.155.146 read from T0547.t06.many.frag # found chain 2bz1A in training set Warning: unaligning (T0547)G159 (2bz1A)N151 because D (zeta) conformation "forbidden" or filtered. T0547 155 :LTIE 2bz1A 147 :LLTN T0547 160 :LNEL 2bz1A 152 :PKKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=88203 # 1nv8A.155.150 read from T0547.t06.many.frag # found chain 1nv8A in template set T0547 155 :LTIEGLNEL 1nv8A 149 :ATDVSSKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88204 # 2b20A.155.279 read from T0547.t06.many.frag # found chain 2b20A in template set Warning: unaligning (T0547)G159 (2b20A)S281 because S (epsilon) conformation "forbidden" or filtered. T0547 155 :LTIE 2b20A 277 :VAGQ T0547 160 :LNEL 2b20A 282 :FGGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88206 # 1z5zA.155.116 read from T0547.t06.many.frag # found chain 1z5zA in template set T0547 155 :LTIEGLNEL 1z5zA 752 :IFTQFVDMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88207 # 2b7nA.156.187 read from T0547.t06.many.frag # found chain 2b7nA in template set Warning: unaligning (T0547)G159 (2b7nA)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 2b7nA 188 :ECE T0547 160 :LNELE 2b7nA 192 :FEEAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=88209 # 1k3yA.156.32 read from T0547.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0547)G159 (1k3yA)S37 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 1k3yA 34 :FIK T0547 160 :LNELE 1k3yA 38 :AEDLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=88211 # 1ct5A.156.111 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 156 :TIEGLNELE 1ct5A 113 :TIDSLKKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88212 # 1y1pA.156.40 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G159 (1y1pA)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 1y1pA 42 :TAR T0547 160 :LNELE 1y1pA 46 :ASKLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88214 # 1knwA.156.119 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G159 (1knwA)S123 because E (beta_S) conformation "forbidden" or filtered. T0547 156 :TIE 1knwA 120 :NAG T0547 160 :LNELE 1knwA 124 :VDMLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=88216 # 7odcA.156.131 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G159 (7odcA)S135 because E (beta_S) conformation "forbidden" or filtered. T0547 156 :TIE 7odcA 132 :TFD T0547 160 :LNELE 7odcA 136 :EIELM Number of specific fragments extracted= 2 number of extra gaps= 1 total=88218 # 1k7jA.156.67 read from T0547.t06.many.frag # found chain 1k7jA in training set T0547 156 :TIEGLNELE 1k7jA 68 :MCRDLSELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88219 # 1em8A.156.41 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 156 :TIEGLNELE 1em8A 42 :ACEDEKQAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=88220 # 2b4aA.156.20 read from T0547.t06.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)G159 (2b4aA)E12 because P (beta_P) conformation "forbidden" or filtered. T0547 156 :TIE 2b4aA 9 :VED T0547 160 :LNELE 2b4aA 13 :PSHAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=88222 # 1pii.156.162 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G159 (1pii)N166 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 1pii 163 :EVS T0547 160 :LNELE 1pii 167 :EEEQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=88224 # 1l1eA.156.92 read from T0547.t06.many.frag # found chain 1l1eA in template set Warning: unaligning (T0547)G159 (1l1eA)S96 because P (beta_P) conformation "forbidden" or filtered. T0547 156 :TIE 1l1eA 93 :LTL T0547 160 :LNELE 1l1eA 97 :ENQAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=88226 # 1oxxK.156.196 read from T0547.t06.many.frag # found chain 1oxxK in training set T0547 156 :TIEGLNELE 1oxxK 197 :VSHDPADIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=88227 # 1a8y.156.128 read from T0547.t06.many.frag # found chain 1a8y in template set T0547 156 :TIEGLNELE 1a8y 129 :LIEGERELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88228 # 1vd6A.156.127 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)I157 (1vd6A)S129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1vd6A)D131 because N (gamma') conformation "forbidden" or filtered. T0547 156 :T 1vd6A 128 :S T0547 158 :E 1vd6A 130 :F T0547 160 :LNELE 1vd6A 132 :PLALL Number of specific fragments extracted= 3 number of extra gaps= 2 total=88231 # 1q0uA.156.77 read from T0547.t06.many.frag # found chain 1q0uA in template set T0547 156 :TIEGLNELE 1q0uA 78 :TAPTRELAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=88232 # 1epuA.156.142 read from T0547.t06.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)E158 (1epuA)D145 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1epuA)S146 because D (zeta) conformation "forbidden" or filtered. T0547 156 :TI 1epuA 143 :SL T0547 160 :LNELE 1epuA 147 :PDTFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=88234 # 1wn2A.156.60 read from T0547.t06.many.frag # found chain 1wn2A in training set Warning: unaligning (T0547)G159 (1wn2A)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 1wn2A 61 :KVE T0547 160 :LNELE 1wn2A 65 :EEELF Number of specific fragments extracted= 2 number of extra gaps= 1 total=88236 # 1y5mA.156.47 read from T0547.t06.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)I157 (1y5mA)A65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1y5mA)S67 because P (beta_P) conformation "forbidden" or filtered. T0547 156 :T 1y5mA 64 :T T0547 158 :E 1y5mA 66 :R T0547 160 :LNELE 1y5mA 68 :EEGLQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=88239 # 1gxjA.156.61 read from T0547.t06.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G159 (1gxjA)N549 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 1gxjA 546 :VVR T0547 160 :LNELE 1gxjA 550 :VDTAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=88241 # 1jqnA.156.503 read from T0547.t06.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)G159 (1jqnA)T507 because E (beta_S) conformation "forbidden" or filtered. T0547 156 :TIE 1jqnA 504 :LFE T0547 160 :LNELE 1jqnA 508 :LDDLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=88243 # 1wiwA.156.219 read from T0547.t06.many.frag # found chain 1wiwA in template set Warning: unaligning (T0547)G159 (1wiwA)P223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L160 (1wiwA)G224 because S (epsilon) conformation "forbidden" or filtered. T0547 156 :TIE 1wiwA 220 :LLG T0547 161 :NELE 1wiwA 225 :EEAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88245 # 1v4vA.156.96 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)G159 (1v4vA)D100 because G (3-10) conformation "forbidden" or filtered. T0547 156 :TIE 1v4vA 97 :VHG T0547 160 :LNELE 1v4vA 101 :TLTTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=88247 # 1rjdA.156.125 read from T0547.t06.many.frag # found chain 1rjdA in training set Warning: unaligning (T0547)E158 (1rjdA)D128 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TI 1rjdA 126 :DI T0547 159 :GLNELE 1rjdA 129 :YNESVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=88249 # 1rifA.156.162 read from T0547.t06.many.frag # found chain 1rifA in template set Warning: unaligning (T0547)G159 (1rifA)T166 because E (beta_S) conformation "forbidden" or filtered. T0547 156 :TIE 1rifA 163 :IVP T0547 160 :LNELE 1rifA 167 :TALTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=88251 # 1nytA.156.147 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)G159 (1nytA)T151 because N (gamma') conformation "forbidden" or filtered. T0547 156 :TIE 1nytA 148 :TNR T0547 160 :LNELE 1nytA 152 :VSRAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=88253 # 1nv8A.156.151 read from T0547.t06.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)G159 (1nv8A)S153 because P (beta_P) conformation "forbidden" or filtered. T0547 156 :TIE 1nv8A 150 :TDV T0547 160 :LNELE 1nv8A 154 :SKAVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=88255 # 1z5zA.156.117 read from T0547.t06.many.frag # found chain 1z5zA in template set T0547 156 :TIEGLNELE 1z5zA 753 :FTQFVDMGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88256 # 1uslA.156.96 read from T0547.t06.many.frag # found chain 1uslA in template set Warning: unaligning (T0547)G159 (1uslA)S92 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 1uslA 89 :LAW T0547 160 :LNELE 1uslA 93 :VQTAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88258 # 2carA.156.14 read from T0547.t06.many.frag # found chain 2carA in training set Warning: unaligning (T0547)G159 (2carA)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 156 :TIE 2carA 13 :VTG T0547 160 :LNELE 2carA 17 :AKKLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=88260 # 1rcqA.156.97 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 156 :TIEGLNELE 1rcqA 98 :VVHCAWQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88261 # 1l1eA.157.93 read from T0547.t06.many.frag # found chain 1l1eA in template set Warning: unaligning (T0547)G159 (1l1eA)S96 because P (beta_P) conformation "forbidden" or filtered. T0547 157 :IE 1l1eA 94 :TL T0547 160 :LNELEA 1l1eA 97 :ENQAGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=88263 # 1ct5A.157.112 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G159 (1ct5A)S116 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1ct5A 114 :ID T0547 160 :LNELEA 1ct5A 117 :LKKAKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=88265 # 2b7nA.157.188 read from T0547.t06.many.frag # found chain 2b7nA in template set T0547 157 :IEGLNELEA 2b7nA 189 :CESFEEAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=88266 # 7odcA.157.132 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I157 (7odcA)F133 because Y (epsilon') conformation "forbidden" or filtered. T0547 158 :EGLNELEA 7odcA 134 :DSEIELMK Number of specific fragments extracted= 1 number of extra gaps= 1 total=88267 # 2b4aA.157.21 read from T0547.t06.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)G159 (2b4aA)E12 because P (beta_P) conformation "forbidden" or filtered. T0547 157 :IE 2b4aA 10 :ED T0547 160 :LNELEA 2b4aA 13 :PSHATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88269 # 1knwA.157.120 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 157 :IEGLNELEA 1knwA 121 :AGSVDMLDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88270 # 1wn2A.157.61 read from T0547.t06.many.frag # found chain 1wn2A in training set Warning: unaligning (T0547)G159 (1wn2A)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1wn2A 62 :VE T0547 160 :LNELEA 1wn2A 65 :EEELFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=88272 # 1k7jA.157.68 read from T0547.t06.many.frag # found chain 1k7jA in training set Warning: unaligning (T0547)G159 (1k7jA)D71 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1k7jA 69 :CR T0547 160 :LNELEA 1k7jA 72 :LSELST Number of specific fragments extracted= 2 number of extra gaps= 1 total=88274 # 1k3yA.157.33 read from T0547.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0547)G159 (1k3yA)S37 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1k3yA 35 :IK T0547 160 :LNELEA 1k3yA 38 :AEDLDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=88276 # 1jqnA.157.504 read from T0547.t06.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)G159 (1jqnA)T507 because E (beta_S) conformation "forbidden" or filtered. T0547 157 :IE 1jqnA 505 :FE T0547 160 :LNELEA 1jqnA 508 :LDDLNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=88278 # 1epuA.157.143 read from T0547.t06.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)E158 (1epuA)D145 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1epuA)S146 because D (zeta) conformation "forbidden" or filtered. T0547 157 :I 1epuA 144 :L T0547 160 :LNELEA 1epuA 147 :PDTFQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=88280 # 1wiwA.157.220 read from T0547.t06.many.frag # found chain 1wiwA in template set Warning: unaligning (T0547)G159 (1wiwA)P223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L160 (1wiwA)G224 because S (epsilon) conformation "forbidden" or filtered. T0547 157 :IE 1wiwA 221 :LG T0547 161 :NELEA 1wiwA 225 :EEAAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88282 # 1em8A.157.42 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 157 :IEGLNELEA 1em8A 43 :CEDEKQAYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88283 # 1gxjA.157.62 read from T0547.t06.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G159 (1gxjA)N549 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1gxjA 547 :VR T0547 160 :LNELEA 1gxjA 550 :VDTAKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88285 # 1q0uA.157.78 read from T0547.t06.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)G159 (1q0uA)T81 because E (beta_S) conformation "forbidden" or filtered. T0547 157 :IE 1q0uA 79 :AP T0547 160 :LNELEA 1q0uA 82 :RELATQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=88287 # 1y1pA.157.41 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G159 (1y1pA)S45 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1y1pA 43 :AR T0547 160 :LNELEA 1y1pA 46 :ASKLAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=88289 # 1rcqA.157.98 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)G159 (1rcqA)C101 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1rcqA 99 :VH T0547 160 :LNELEA 1rcqA 102 :AWQLEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88291 # 1vd6A.157.128 read from T0547.t06.many.frag # found chain 1vd6A in training set T0547 157 :IEGLNELEA 1vd6A 129 :SFDPLALLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88292 # 1izcA.157.125 read from T0547.t06.many.frag # found chain 1izcA in training set T0547 157 :IEGLNELEA 1izcA 126 :VETVEEVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88293 # 1oxxK.157.197 read from T0547.t06.many.frag # found chain 1oxxK in training set T0547 157 :IEGLNELEA 1oxxK 198 :SHDPADIFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88294 # 1vchA.157.129 read from T0547.t06.many.frag # found chain 1vchA in template set Warning: unaligning (T0547)L160 (1vchA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 157 :IEG 1vchA 130 :VAS T0547 161 :NELEA 1vchA 134 :ETMRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88296 # 1pii.157.163 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)G159 (1pii)N166 because Y (epsilon') conformation "forbidden" or filtered. T0547 157 :IE 1pii 164 :VS T0547 160 :LNELEA 1pii 167 :EEEQER Number of specific fragments extracted= 2 number of extra gaps= 1 total=88298 # 1nytA.157.148 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)G159 (1nytA)T151 because N (gamma') conformation "forbidden" or filtered. T0547 157 :IE 1nytA 149 :NR T0547 160 :LNELEA 1nytA 152 :VSRAEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=88300 # 1a8y.157.129 read from T0547.t06.many.frag # found chain 1a8y in template set Warning: unaligning (T0547)G159 (1a8y)G132 because S (epsilon) conformation "forbidden" or filtered. T0547 157 :IE 1a8y 130 :IE T0547 160 :LNELEA 1a8y 133 :ERELQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88302 # 1z5zA.157.118 read from T0547.t06.many.frag # found chain 1z5zA in template set T0547 157 :IEGLNELEA 1z5zA 754 :TQFVDMGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=88303 # 1y5mA.157.48 read from T0547.t06.many.frag # found chain 1y5mA in template set T0547 157 :IEGLNELEA 1y5mA 65 :ARSEEGLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88304 # 1zcjA.157.66 read from T0547.t06.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)G159 (1zcjA)D328 because P (beta_P) conformation "forbidden" or filtered. T0547 157 :IE 1zcjA 326 :ES T0547 160 :LNELEA 1zcjA 329 :PKQLDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88306 # 1rjdA.157.126 read from T0547.t06.many.frag # found chain 1rjdA in training set Warning: unaligning (T0547)E158 (1rjdA)D128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1rjdA)Y129 because P (beta_P) conformation "forbidden" or filtered. T0547 157 :I 1rjdA 127 :I T0547 160 :LNELEA 1rjdA 130 :NESVEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88308 # 1ne2A.157.80 read from T0547.t06.many.frag # found chain 1ne2A in training set T0547 157 :IEGLNELEA 1ne2A 78 :DIDPDAIET Number of specific fragments extracted= 1 number of extra gaps= 0 total=88309 # 2b9eA.157.131 read from T0547.t06.many.frag # found chain 2b9eA in training set T0547 157 :IEGLNELEA 2b9eA 258 :DLDAKRLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88310 # 1ct5A.158.113 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 158 :EGLNELEAI 1ct5A 115 :DSLKKAKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88311 # 1em8A.158.43 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 158 :EGLNELEAI 1em8A 44 :EDEKQAYRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88312 # 1knwA.158.121 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 158 :EGLNELEAI 1knwA 122 :GSVDMLDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88313 # 1nytA.158.149 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)G159 (1nytA)T151 because N (gamma') conformation "forbidden" or filtered. T0547 158 :E 1nytA 150 :R T0547 160 :LNELEAI 1nytA 152 :VSRAEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88315 # 1wn2A.158.62 read from T0547.t06.many.frag # found chain 1wn2A in training set Warning: unaligning (T0547)G159 (1wn2A)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 158 :E 1wn2A 63 :E T0547 160 :LNELEAI 1wn2A 65 :EEELFKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88317 # 1y1pA.158.42 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 158 :EGLNELEAI 1y1pA 44 :RSASKLANL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88318 # 7odcA.158.133 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 158 :EGLNELEAI 7odcA 134 :DSEIELMKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88319 # 1y5mA.158.49 read from T0547.t06.many.frag # found chain 1y5mA in template set T0547 158 :EGLNELEAI 1y5mA 66 :RSEEGLQKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88320 # 1jqnA.158.505 read from T0547.t06.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)G159 (1jqnA)T507 because E (beta_S) conformation "forbidden" or filtered. T0547 158 :E 1jqnA 506 :E T0547 160 :LNELEAI 1jqnA 508 :LDDLNNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88322 # 1vchA.158.130 read from T0547.t06.many.frag # found chain 1vchA in template set Warning: unaligning (T0547)L160 (1vchA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 158 :EG 1vchA 131 :AS T0547 161 :NELEAI 1vchA 134 :ETMRAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=88324 # 2b4aA.158.22 read from T0547.t06.many.frag # found chain 2b4aA in template set T0547 158 :EGLNELEAI 2b4aA 11 :DEPSHATLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=88325 # 1q0uA.158.79 read from T0547.t06.many.frag # found chain 1q0uA in template set T0547 158 :EGLNELEAI 1q0uA 80 :PTRELATQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=88326 # 2b7nA.158.189 read from T0547.t06.many.frag # found chain 2b7nA in template set Warning: unaligning (T0547)G159 (2b7nA)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 158 :E 2b7nA 190 :E T0547 160 :LNELEAI 2b7nA 192 :FEEAKNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88328 # 1wiwA.158.221 read from T0547.t06.many.frag # found chain 1wiwA in template set Warning: unaligning (T0547)E158 (1wiwA)G222 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1wiwA)P223 because P (beta_P) conformation "forbidden" or filtered. T0547 160 :LNELEAI 1wiwA 224 :GEEAALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=88329 # 1gxjA.158.63 read from T0547.t06.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G159 (1gxjA)N549 because Y (epsilon') conformation "forbidden" or filtered. T0547 158 :E 1gxjA 548 :R T0547 160 :LNELEAI 1gxjA 550 :VDTAKAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=88331 # 1rlr.158.231 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 158 :EGLNELEAI 1rlr 232 :DSLDSINAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=88332 # 1izcA.158.126 read from T0547.t06.many.frag # found chain 1izcA in training set T0547 158 :EGLNELEAI 1izcA 127 :ETVEEVREF Number of specific fragments extracted= 1 number of extra gaps= 0 total=88333 # 2b9eA.158.132 read from T0547.t06.many.frag # found chain 2b9eA in training set T0547 158 :EGLNELEAI 2b9eA 259 :LDAKRLASM Number of specific fragments extracted= 1 number of extra gaps= 0 total=88334 # 1iuqA.158.113 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 158 :EGLNELEAI 1iuqA 115 :GNLSLFKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=88335 # 1k3yA.158.34 read from T0547.t06.many.frag # found chain 1k3yA in training set T0547 158 :EGLNELEAI 1k3yA 36 :KSAEDLDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88336 # 1jalA.158.213 read from T0547.t06.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)E158 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)E214 Warning: unaligning (T0547)G159 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)N216 Warning: unaligning (T0547)L160 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)N216 T0547 161 :NELEAI 1jalA 217 :PYLDRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=88337 # 1l1eA.158.94 read from T0547.t06.many.frag # found chain 1l1eA in template set Warning: unaligning (T0547)G159 (1l1eA)S96 because P (beta_P) conformation "forbidden" or filtered. T0547 158 :E 1l1eA 95 :L T0547 160 :LNELEAI 1l1eA 97 :ENQAGHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=88339 # 1nt2A.158.88 read from T0547.t06.many.frag # found chain 1nt2A in template set T0547 158 :EGLNELEAI 1nt2A 89 :YSAKPFEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88340 # 1wbhA.158.116 read from T0547.t06.many.frag # found chain 1wbhA in training set T0547 158 :EGLNELEAI 1wbhA 116 :STVSELMLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88341 # 1z5zA.158.119 read from T0547.t06.many.frag # found chain 1z5zA in template set T0547 158 :EGLNELEAI 1z5zA 755 :QFVDMGKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=88342 # 1rcqA.158.99 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 158 :EGLNELEAI 1rcqA 100 :HCAWQLEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=88343 # 1h6dA.158.184 read from T0547.t06.many.frag # found chain 1h6dA in template set T0547 158 :EGLNELEAI 1h6dA 185 :TSVADCQRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=88344 # 1jubA.158.168 read from T0547.t06.many.frag # found chain 1jubA in training set T0547 158 :EGLNELEAI 1jubA 169 :FDLVHFDIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=88345 # 1k7jA.158.69 read from T0547.t06.many.frag # found chain 1k7jA in training set T0547 158 :EGLNELEAI 1k7jA 70 :RDLSELSTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=88346 # 1epuA.158.144 read from T0547.t06.many.frag # found chain 1epuA in template set Warning: unaligning (T0547)E158 (1epuA)D145 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G159 (1epuA)S146 because D (zeta) conformation "forbidden" or filtered. T0547 160 :LNELEAI 1epuA 147 :PDTFQVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=88347 # 1ct5A.159.114 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)G159 (1ct5A)S116 because Y (epsilon') conformation "forbidden" or filtered. T0547 160 :LNELEAII 1ct5A 117 :LKKAKKLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=88348 # 1knwA.159.122 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G159 (1knwA)S123 because E (beta_S) conformation "forbidden" or filtered. T0547 160 :LNELEAII 1knwA 124 :VDMLDQLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=88349 # 7odcA.159.134 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 159 :GLNELEAII 7odcA 135 :SEIELMKVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88350 # 1em8A.159.44 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 159 :GLNELEAII 1em8A 45 :DEKQAYRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=88351 # 2b4aA.159.23 read from T0547.t06.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)G159 (2b4aA)E12 because P (beta_P) conformation "forbidden" or filtered. T0547 160 :LNELEAII 2b4aA 13 :PSHATLIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=88352 # 1wn2A.159.63 read from T0547.t06.many.frag # found chain 1wn2A in training set Warning: unaligning (T0547)G159 (1wn2A)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 160 :LNELEAII 1wn2A 65 :EEELFKLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=88353 # 1gxjA.159.64 read from T0547.t06.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)G159 (1gxjA)N549 because Y (epsilon') conformation "forbidden" or filtered. T0547 160 :LNELEAII 1gxjA 550 :VDTAKAIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=88354 # 1y1pA.159.43 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 159 :GLNELEAII 1y1pA 45 :SASKLANLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88355 # 1wiwA.159.222 read from T0547.t06.many.frag # found chain 1wiwA in template set T0547 159 :GLNELEAII 1wiwA 223 :PGEEAALAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88356 # 1y5mA.159.50 read from T0547.t06.many.frag # found chain 1y5mA in template set Warning: unaligning (T0547)G159 (1y5mA)S67 because P (beta_P) conformation "forbidden" or filtered. T0547 160 :LNELEAII 1y5mA 68 :EEGLQKVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=88357 # 1jalA.159.214 read from T0547.t06.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)G159 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1jalA)N216 Warning: unaligning (T0547)L160 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)N216 T0547 161 :NELEAII 1jalA 217 :PYLDRVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=88358 # 1vchA.159.131 read from T0547.t06.many.frag # found chain 1vchA in template set T0547 159 :GLNELEAII 1vchA 132 :SGETMRAME Number of specific fragments extracted= 1 number of extra gaps= 0 total=88359 # 1q0uA.159.80 read from T0547.t06.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)G159 (1q0uA)T81 because E (beta_S) conformation "forbidden" or filtered. T0547 160 :LNELEAII 1q0uA 82 :RELATQIY Number of specific fragments extracted= 1 number of extra gaps= 1 total=88360 # 1izcA.159.127 read from T0547.t06.many.frag # found chain 1izcA in training set T0547 159 :GLNELEAII 1izcA 128 :TVEEVREFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88361 # 1jqnA.159.506 read from T0547.t06.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)A165 (1jqnA)N513 because G (3-10) conformation "forbidden" or filtered. T0547 159 :GLNELE 1jqnA 507 :TLDDLN T0547 166 :II 1jqnA 514 :AN Number of specific fragments extracted= 2 number of extra gaps= 1 total=88363 # 1g61A.159.76 read from T0547.t06.many.frag # found chain 1g61A in training set T0547 159 :GLNELEAII 1g61A 2077 :EDEELDRIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88364 # 1l1eA.159.95 read from T0547.t06.many.frag # found chain 1l1eA in template set Warning: unaligning (T0547)G159 (1l1eA)S96 because P (beta_P) conformation "forbidden" or filtered. T0547 160 :LNELEAII 1l1eA 97 :ENQAGHVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=88365 # 1iuqA.159.114 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 159 :GLNELEAII 1iuqA 116 :NLSLFKDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88366 # 2bbrA.159.107 read from T0547.t06.many.frag # found chain 2bbrA in training set T0547 159 :GLNELEAII 2bbrA 108 :DSSELRALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88367 # 1nt2A.159.89 read from T0547.t06.many.frag # found chain 1nt2A in template set T0547 159 :GLNELEAII 1nt2A 90 :SAKPFEKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88368 # 2b9eA.159.133 read from T0547.t06.many.frag # found chain 2b9eA in training set T0547 159 :GLNELEAII 2b9eA 260 :DAKRLASMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88369 # 1k3yA.159.35 read from T0547.t06.many.frag # found chain 1k3yA in training set T0547 159 :GLNELEAII 1k3yA 37 :SAEDLDKLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88370 # 1h6dA.159.185 read from T0547.t06.many.frag # found chain 1h6dA in template set T0547 159 :GLNELEAII 1h6dA 186 :SVADCQRMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=88371 1y14A expands to /projects/compbio/data/pdb/1y14.pdb.gz 1y14A:# 1y14A.159.121 read from T0547.t06.many.frag # adding 1y14A to template set # found chain 1y14A in template set T0547 159 :GLNELEAII 1y14A 156 :DQETVGAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=88372 # 1vefA.159.203 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 159 :GLNELEAII 1vefA 204 :TPEFLRAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88373 # 2b7nA.159.190 read from T0547.t06.many.frag # found chain 2b7nA in template set Warning: unaligning (T0547)G159 (2b7nA)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 160 :LNELEAII 2b7nA 192 :FEEAKNAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=88374 # 1f74A.159.21 read from T0547.t06.many.frag # found chain 1f74A in training set T0547 159 :GLNELEAII 1f74A 22 :NEKGLRQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=88375 # 1nytA.159.150 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)G159 (1nytA)T151 because N (gamma') conformation "forbidden" or filtered. T0547 160 :LNELEAII 1nytA 152 :VSRAEELA Number of specific fragments extracted= 1 number of extra gaps= 1 total=88376 # 1vd6A.159.130 read from T0547.t06.many.frag # found chain 1vd6A in training set Warning: unaligning (T0547)G159 (1vd6A)D131 because N (gamma') conformation "forbidden" or filtered. T0547 160 :LNELEAII 1vd6A 132 :PLALLALR Number of specific fragments extracted= 1 number of extra gaps= 1 total=88377 # 1jubA.159.169 read from T0547.t06.many.frag # found chain 1jubA in training set Warning: unaligning (T0547)G159 (1jubA)D170 because E (beta_S) conformation "forbidden" or filtered. T0547 160 :LNELEAII 1jubA 171 :LVHFDIMA Number of specific fragments extracted= 1 number of extra gaps= 1 total=88378 # 1ct5A.160.115 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 160 :LNELEAIID 1ct5A 117 :LKKAKKLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88379 # 1em8A.160.45 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 160 :LNELEAIID 1em8A 46 :EKQAYRLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88380 # 1knwA.160.123 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 160 :LNELEAIID 1knwA 124 :VDMLDQLGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88381 # 1vchA.160.132 read from T0547.t06.many.frag # found chain 1vchA in template set Warning: unaligning (T0547)L160 (1vchA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 161 :NELEAIID 1vchA 134 :ETMRAMEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=88382 # 1wn2A.160.64 read from T0547.t06.many.frag # found chain 1wn2A in training set T0547 160 :LNELEAIID 1wn2A 65 :EEELFKLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88383 # 1y1pA.160.44 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 160 :LNELEAIID 1y1pA 46 :ASKLANLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88384 # 7odcA.160.135 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 160 :LNELEAIID 7odcA 136 :EIELMKVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88385 # 1jalA.160.215 read from T0547.t06.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)L160 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1jalA)N216 T0547 161 :NELEAIID 1jalA 217 :PYLDRVRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=88386 # 1h6dA.160.186 read from T0547.t06.many.frag # found chain 1h6dA in template set T0547 160 :LNELEAIID 1h6dA 187 :VADCQRMID Number of specific fragments extracted= 1 number of extra gaps= 0 total=88387 # 1nytA.160.151 read from T0547.t06.many.frag # found chain 1nytA in training set T0547 160 :LNELEAIID 1nytA 152 :VSRAEELAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88388 # 1nt2A.160.90 read from T0547.t06.many.frag # found chain 1nt2A in template set T0547 160 :LNELEAIID 1nt2A 91 :AKPFEKLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88389 # 1g61A.160.77 read from T0547.t06.many.frag # found chain 1g61A in training set T0547 160 :LNELEAIID 1g61A 2078 :DEELDRIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=88390 # 1gxjA.160.65 read from T0547.t06.many.frag # found chain 1gxjA in template set T0547 160 :LNELEAIID 1gxjA 550 :VDTAKAIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88391 # 1y14A.160.122 read from T0547.t06.many.frag # found chain 1y14A in template set T0547 160 :LNELEAIID 1y14A 157 :QETVGAVIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88392 # 2b4aA.160.24 read from T0547.t06.many.frag # found chain 2b4aA in template set T0547 160 :LNELEAIID 2b4aA 13 :PSHATLIQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=88393 # 1jqnA.160.507 read from T0547.t06.many.frag # found chain 1jqnA in template set T0547 160 :LNELEAIID 1jqnA 508 :LDDLNNAND Number of specific fragments extracted= 1 number of extra gaps= 0 total=88394 # 1y5mA.160.51 read from T0547.t06.many.frag # found chain 1y5mA in template set T0547 160 :LNELEAIID 1y5mA 68 :EEGLQKVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88395 # 1iuqA.160.115 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 160 :LNELEAIID 1iuqA 117 :LSLFKDIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88396 # 1izcA.160.128 read from T0547.t06.many.frag # found chain 1izcA in training set T0547 160 :LNELEAIID 1izcA 129 :VEEVREFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88397 # 1wiwA.160.223 read from T0547.t06.many.frag # found chain 1wiwA in template set Warning: unaligning (T0547)L160 (1wiwA)G224 because S (epsilon) conformation "forbidden" or filtered. T0547 161 :NELEAIID 1wiwA 225 :EEAALAKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=88398 # 1q0uA.160.81 read from T0547.t06.many.frag # found chain 1q0uA in template set T0547 160 :LNELEAIID 1q0uA 82 :RELATQIYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=88399 # 2b8nA.160.149 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 160 :LNELEAIID 2b8nA 138 :LEEIQKLTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88400 # 1vefA.160.204 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 160 :LNELEAIID 1vefA 205 :PEFLRAARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88401 # 2b9eA.160.134 read from T0547.t06.many.frag # found chain 2b9eA in training set T0547 160 :LNELEAIID 2b9eA 261 :AKRLASMAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=88402 # 1qgoA.160.86 read from T0547.t06.many.frag # found chain 1qgoA in template set Warning: unaligning (T0547)L160 (1qgoA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0547 161 :NELEAIID 1qgoA 88 :DEYEKIVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=88403 # 1yiiA.160.117 read from T0547.t06.many.frag # found chain 1yiiA in training set T0547 160 :LNELEAIID 1yiiA 119 :PAEVQNIKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88404 # 1ttzA.160.10 read from T0547.t06.many.frag # found chain 1ttzA in template set T0547 160 :LNELEAIID 1ttzA 11 :CHLCDQAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88405 # 1vliA.160.169 read from T0547.t06.many.frag # found chain 1vliA in template set T0547 160 :LNELEAIID 1vliA 158 :ISDVHEAWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88406 # 2bbrA.160.108 read from T0547.t06.many.frag # found chain 2bbrA in training set T0547 160 :LNELEAIID 2bbrA 109 :SSELRALRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88407 # 1zzmA.160.74 read from T0547.t06.many.frag # found chain 1zzmA in training set T0547 160 :LNELEAIID 1zzmA 75 :DVSLEQLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88408 # 1ct5A.161.116 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 161 :NELEAIIDI 1ct5A 118 :KKAKKLNES Number of specific fragments extracted= 1 number of extra gaps= 0 total=88409 # 1em8A.161.46 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 161 :NELEAIIDI 1em8A 47 :KQAYRLDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88410 # 1wn2A.161.65 read from T0547.t06.many.frag # found chain 1wn2A in training set T0547 161 :NELEAIIDI 1wn2A 66 :EELFKLKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88411 # 1y1pA.161.45 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 161 :NELEAIIDI 1y1pA 47 :SKLANLQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88412 # 1g61A.161.78 read from T0547.t06.many.frag # found chain 1g61A in training set T0547 161 :NELEAIIDI 1g61A 2079 :EELDRIKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=88413 # 1vchA.161.133 read from T0547.t06.many.frag # found chain 1vchA in template set T0547 161 :NELEAIIDI 1vchA 134 :ETMRAMEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=88414 # 1jalA.161.216 read from T0547.t06.many.frag # found chain 1jalA in template set T0547 161 :NELEAIIDI 1jalA 217 :PYLDRVREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=88415 # 1knwA.161.124 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 161 :NELEAIIDI 1knwA 125 :DMLDQLGQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88416 # 1zzmA.161.75 read from T0547.t06.many.frag # found chain 1zzmA in training set T0547 161 :NELEAIIDI 1zzmA 76 :VSLEQLQQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88417 # 1nt2A.161.91 read from T0547.t06.many.frag # found chain 1nt2A in template set T0547 161 :NELEAIIDI 1nt2A 92 :KPFEKLLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88418 # 8abp.161.68 read from T0547.t06.many.frag # found chain 8abp in training set T0547 161 :NELEAIIDI 8abp 69 :KLGSAIVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88419 # 1gxjA.161.66 read from T0547.t06.many.frag # found chain 1gxjA in template set T0547 161 :NELEAIIDI 1gxjA 551 :DTAKAIVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=88420 # 1y5mA.161.52 read from T0547.t06.many.frag # found chain 1y5mA in template set T0547 161 :NELEAIIDI 1y5mA 69 :EGLQKVVSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88421 # 1iuqA.161.116 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 161 :NELEAIIDI 1iuqA 118 :SLFKDIEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88422 # 1y14A.161.123 read from T0547.t06.many.frag # found chain 1y14A in template set T0547 161 :NELEAIIDI 1y14A 158 :ETVGAVIQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88423 # 1h6dA.161.187 read from T0547.t06.many.frag # found chain 1h6dA in template set T0547 161 :NELEAIIDI 1h6dA 188 :ADCQRMIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88424 # 1qgoA.161.87 read from T0547.t06.many.frag # found chain 1qgoA in template set T0547 161 :NELEAIIDI 1qgoA 88 :DEYEKIVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88425 # 2b8nA.161.150 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 161 :NELEAIIDI 2b8nA 139 :EEIQKLTSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88426 # 1vefA.161.205 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 161 :NELEAIIDI 1vefA 206 :EFLRAAREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=88427 # 1ls1A.161.139 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 161 :NELEAIIDI 1ls1A 140 :AAREQLRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88428 # 1yiiA.161.118 read from T0547.t06.many.frag # found chain 1yiiA in training set T0547 161 :NELEAIIDI 1yiiA 120 :AEVQNIKQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88429 # 1q0uA.161.82 read from T0547.t06.many.frag # found chain 1q0uA in template set T0547 161 :NELEAIIDI 1q0uA 83 :ELATQIYHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88430 # 1nytA.161.152 read from T0547.t06.many.frag # found chain 1nytA in training set T0547 161 :NELEAIIDI 1nytA 153 :SRAEELAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88431 # 1r6fA.161.7 read from T0547.t06.many.frag # found chain 1r6fA in template set T0547 161 :NELEAIIDI 1r6fA 30 :SVLEELVQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88432 # 2b9eA.161.135 read from T0547.t06.many.frag # found chain 2b9eA in training set T0547 161 :NELEAIIDI 2b9eA 262 :KRLASMATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88433 # 1dqaA.161.191 read from T0547.t06.many.frag # found chain 1dqaA in template set T0547 161 :NELEAIIDI 1dqaA 613 :EGFAVIKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88434 # 7odcA.161.136 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 161 :NELEAIIDI 7odcA 137 :IELMKVARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88435 # 1ttzA.161.11 read from T0547.t06.many.frag # found chain 1ttzA in template set T0547 161 :NELEAIIDI 1ttzA 12 :HLCDQAVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88436 # 1vliA.161.170 read from T0547.t06.many.frag # found chain 1vliA in template set T0547 161 :NELEAIIDI 1vliA 159 :SDVHEAWRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=88437 # 2b4aA.161.25 read from T0547.t06.many.frag # found chain 2b4aA in template set T0547 161 :NELEAIIDI 2b4aA 14 :SHATLIQYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=88438 # 1wn2A.162.66 read from T0547.t06.many.frag # found chain 1wn2A in training set T0547 162 :ELEAIIDIA 1wn2A 67 :ELFKLKAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88439 # 1em8A.162.47 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 162 :ELEAIIDIA 1em8A 48 :QAYRLDEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88440 # 1ct5A.162.117 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 162 :ELEAIIDIA 1ct5A 119 :KAKKLNESR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88441 # 8abp.162.69 read from T0547.t06.many.frag # found chain 8abp in training set T0547 162 :ELEAIIDIA 8abp 70 :LGSAIVAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88442 # 1zzmA.162.76 read from T0547.t06.many.frag # found chain 1zzmA in training set T0547 162 :ELEAIIDIA 1zzmA 77 :SLEQLQQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88443 # 1jalA.162.217 read from T0547.t06.many.frag # found chain 1jalA in template set T0547 162 :ELEAIIDIA 1jalA 218 :YLDRVREIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88444 # 1y1pA.162.46 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 162 :ELEAIIDIA 1y1pA 48 :KLANLQKRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=88445 # 1nt2A.162.92 read from T0547.t06.many.frag # found chain 1nt2A in template set T0547 162 :ELEAIIDIA 1nt2A 93 :PFEKLLELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88446 # 1g61A.162.79 read from T0547.t06.many.frag # found chain 1g61A in training set T0547 162 :ELEAIIDIA 1g61A 2080 :ELDRIKNFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88447 # 2b8nA.162.151 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 162 :ELEAIIDIA 2b8nA 140 :EIQKLTSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88448 # 1vchA.162.134 read from T0547.t06.many.frag # found chain 1vchA in template set T0547 162 :ELEAIIDIA 1vchA 135 :TMRAMEKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88449 # 1y5mA.162.53 read from T0547.t06.many.frag # found chain 1y5mA in template set T0547 162 :ELEAIIDIA 1y5mA 70 :GLQKVVSRC Number of specific fragments extracted= 1 number of extra gaps= 0 total=88450 # 1q0uA.162.83 read from T0547.t06.many.frag # found chain 1q0uA in template set T0547 162 :ELEAIIDIA 1q0uA 84 :LATQIYHET Number of specific fragments extracted= 1 number of extra gaps= 0 total=88451 # 1y14A.162.124 read from T0547.t06.many.frag # found chain 1y14A in template set T0547 162 :ELEAIIDIA 1y14A 159 :TVGAVIQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88452 # 1wcwA.162.170 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 162 :ELEAIIDIA 1wcwA 171 :GILRLEEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88453 # 1knwA.162.125 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I169 (1knwA)V133 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A170 (1knwA)S134 because D (zeta) conformation "forbidden" or filtered. T0547 162 :ELEAIID 1knwA 126 :MLDQLGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=88454 # 1h6dA.162.188 read from T0547.t06.many.frag # found chain 1h6dA in template set T0547 162 :ELEAIIDIA 1h6dA 189 :DCQRMIDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88455 # 1ls1A.162.140 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 162 :ELEAIIDIA 1ls1A 141 :AREQLRLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88456 # 2b4aA.162.26 read from T0547.t06.many.frag # found chain 2b4aA in template set T0547 162 :ELEAIIDIA 2b4aA 15 :HATLIQYHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88457 # 1nytA.162.153 read from T0547.t06.many.frag # found chain 1nytA in training set T0547 162 :ELEAIIDIA 1nytA 154 :RAEELAKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=88458 # 1rttA.162.61 read from T0547.t06.many.frag # found chain 1rttA in training set T0547 162 :ELEAIIDIA 1rttA 62 :AVERFREQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=88459 # 1r6fA.162.8 read from T0547.t06.many.frag # found chain 1r6fA in template set T0547 162 :ELEAIIDIA 1r6fA 31 :VLEELVQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88460 # 7odcA.162.137 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A170 (7odcA)H146 because D (zeta) conformation "forbidden" or filtered. T0547 162 :ELEAIIDI 7odcA 138 :ELMKVARA Number of specific fragments extracted= 1 number of extra gaps= 1 total=88461 # 1vefA.162.206 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 162 :ELEAIIDIA 1vefA 207 :FLRAAREIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=88462 1p99A expands to /projects/compbio/data/pdb/1p99.pdb.gz 1p99A:# 1p99A.162.51 read from T0547.t06.many.frag # adding 1p99A to template set # found chain 1p99A in template set T0547 162 :ELEAIIDIA 1p99A 52 :AWEKVKELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88463 # 1xovA.162.70 read from T0547.t06.many.frag # found chain 1xovA in template set T0547 162 :ELEAIIDIA 1xovA 59 :NLNKIVNWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=88464 # 1gxjA.162.67 read from T0547.t06.many.frag # found chain 1gxjA in template set T0547 162 :ELEAIIDIA 1gxjA 552 :TAKAIVEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88465 # 2f02A.162.64 read from T0547.t06.many.frag # found chain 2f02A in template set T0547 162 :ELEAIIDIA 2f02A 63 :HGAFIANEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88466 # 1p1xA.162.150 read from T0547.t06.many.frag # found chain 1p1xA in training set T0547 162 :ELEAIIDIA 1p1xA 150 :LIRKASEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88467 # 1qgoA.162.88 read from T0547.t06.many.frag # found chain 1qgoA in template set T0547 162 :ELEAIIDIA 1qgoA 89 :EYEKIVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88468 # 1wn2A.163.67 read from T0547.t06.many.frag # found chain 1wn2A in training set T0547 163 :LEAIIDIAK 1wn2A 68 :LFKLKAEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88469 # 1ct5A.163.118 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 163 :LEAIIDIAK 1ct5A 120 :AKKLNESRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88470 # 1em8A.163.48 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 163 :LEAIIDIAK 1em8A 49 :AYRLDEALW Number of specific fragments extracted= 1 number of extra gaps= 0 total=88471 # 1zzmA.163.77 read from T0547.t06.many.frag # found chain 1zzmA in training set T0547 163 :LEAIIDIAK 1zzmA 78 :LEQLQQALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88472 # 8abp.163.70 read from T0547.t06.many.frag # found chain 8abp in training set T0547 163 :LEAIIDIAK 8abp 71 :GSAIVAKAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88473 # 1nt2A.163.93 read from T0547.t06.many.frag # found chain 1nt2A in template set T0547 163 :LEAIIDIAK 1nt2A 94 :FEKLLELVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88474 # 1jalA.163.218 read from T0547.t06.many.frag # found chain 1jalA in template set T0547 163 :LEAIIDIAK 1jalA 219 :LDRVREIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88475 # 1y1pA.163.47 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 163 :LEAIIDIAK 1y1pA 49 :LANLQKRWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=88476 # 1g61A.163.80 read from T0547.t06.many.frag # found chain 1g61A in training set T0547 163 :LEAIIDIAK 1g61A 2081 :LDRIKNFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88477 # 1vefA.163.207 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 163 :LEAIIDIAK 1vefA 208 :LRAAREITQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88478 # 1ls1A.163.141 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 163 :LEAIIDIAK 1ls1A 142 :REQLRLLGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88479 # 1y5mA.163.54 read from T0547.t06.many.frag # found chain 1y5mA in template set T0547 163 :LEAIIDIAK 1y5mA 71 :LQKVVSRCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88480 # 1vchA.163.135 read from T0547.t06.many.frag # found chain 1vchA in template set T0547 163 :LEAIIDIAK 1vchA 136 :MRAMEKMVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88481 # 1duvG.163.197 read from T0547.t06.many.frag # found chain 1duvG in training set T0547 163 :LEAIIDIAK 1duvG 198 :VTECRALAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88482 # 1rttA.163.62 read from T0547.t06.many.frag # found chain 1rttA in training set T0547 163 :LEAIIDIAK 1rttA 63 :VERFREQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88483 # 2b8nA.163.152 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 163 :LEAIIDIAK 2b8nA 141 :IQKLTSALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88484 # 1p99A.163.52 read from T0547.t06.many.frag # found chain 1p99A in template set T0547 163 :LEAIIDIAK 1p99A 53 :WEKVKELAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88485 # 1vliA.163.172 read from T0547.t06.many.frag # found chain 1vliA in template set T0547 163 :LEAIIDIAK 1vliA 161 :VHEAWRTIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88486 # 1y14A.163.125 read from T0547.t06.many.frag # found chain 1y14A in template set T0547 163 :LEAIIDIAK 1y14A 160 :VGAVIQLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88487 # 1r6fA.163.9 read from T0547.t06.many.frag # found chain 1r6fA in template set T0547 163 :LEAIIDIAK 1r6fA 32 :LEELVQLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88488 # 1l1eA.163.99 read from T0547.t06.many.frag # found chain 1l1eA in template set T0547 163 :LEAIIDIAK 1l1eA 100 :AGHVQKMFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=88489 # 1gxjA.163.68 read from T0547.t06.many.frag # found chain 1gxjA in template set T0547 163 :LEAIIDIAK 1gxjA 553 :AKAIVEFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88490 # 1q0uA.163.84 read from T0547.t06.many.frag # found chain 1q0uA in template set T0547 163 :LEAIIDIAK 1q0uA 85 :ATQIYHETL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88491 # 1zxxA.163.149 read from T0547.t06.many.frag # found chain 1zxxA in template set T0547 163 :LEAIIDIAK 1zxxA 150 :IDKIRDTAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88492 # 1wcwA.163.171 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 163 :LEAIIDIAK 1wcwA 172 :ILRLEEALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88493 # 1dqaA.163.193 read from T0547.t06.many.frag # found chain 1dqaA in template set T0547 163 :LEAIIDIAK 1dqaA 615 :FAVIKEAFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=88494 # 1w8sA.163.126 read from T0547.t06.many.frag # found chain 1w8sA in template set T0547 163 :LEAIIDIAK 1w8sA 127 :LARIKRDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88495 # 1knwA.163.126 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A170 (1knwA)S134 because D (zeta) conformation "forbidden" or filtered. T0547 163 :LEAIIDI 1knwA 127 :LDQLGQV T0547 171 :K 1knwA 135 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=88497 # 7odcA.163.138 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A170 (7odcA)H146 because D (zeta) conformation "forbidden" or filtered. T0547 163 :LEAIIDI 7odcA 139 :LMKVARA T0547 171 :K 7odcA 147 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=88499 # 2b9eA.163.137 read from T0547.t06.many.frag # found chain 2b9eA in training set T0547 163 :LEAIIDIAK 2b9eA 264 :LASMATLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88500 # 1zzmA.164.78 read from T0547.t06.many.frag # found chain 1zzmA in training set T0547 164 :EAIIDIAKE 1zzmA 79 :EQLQQALER Number of specific fragments extracted= 1 number of extra gaps= 0 total=88501 # 1ct5A.164.119 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 164 :EAIIDIAKE 1ct5A 121 :KKLNESRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88502 # 1wn2A.164.68 read from T0547.t06.many.frag # found chain 1wn2A in training set T0547 164 :EAIIDIAKE 1wn2A 69 :FKLKAEAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88503 # 8abp.164.71 read from T0547.t06.many.frag # found chain 8abp in training set T0547 164 :EAIIDIAKE 8abp 72 :SAIVAKARG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88504 # 1em8A.164.49 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 164 :EAIIDIAKE 1em8A 50 :YRLDEALWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88505 # 1vefA.164.208 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 164 :EAIIDIAKE 1vefA 209 :RAAREITQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88506 # 1g61A.164.81 read from T0547.t06.many.frag # found chain 1g61A in training set T0547 164 :EAIIDIAKE 1g61A 2082 :DRIKNFLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88507 # 1duvG.164.198 read from T0547.t06.many.frag # found chain 1duvG in training set T0547 164 :EAIIDIAKE 1duvG 199 :TECRALAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88508 # 1p99A.164.53 read from T0547.t06.many.frag # found chain 1p99A in template set T0547 164 :EAIIDIAKE 1p99A 54 :EKVKELAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88509 # 1nt2A.164.94 read from T0547.t06.many.frag # found chain 1nt2A in template set T0547 164 :EAIIDIAKE 1nt2A 95 :EKLLELVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88510 # 1y1pA.164.48 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 164 :EAIIDIAKE 1y1pA 50 :ANLQKRWDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88511 # 1jalA.164.219 read from T0547.t06.many.frag # found chain 1jalA in template set T0547 164 :EAIIDIAKE 1jalA 220 :DRVREIAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88512 # 1r6fA.164.10 read from T0547.t06.many.frag # found chain 1r6fA in template set T0547 164 :EAIIDIAKE 1r6fA 33 :EELVQLVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88513 # 1l1eA.164.100 read from T0547.t06.many.frag # found chain 1l1eA in template set T0547 164 :EAIIDIAKE 1l1eA 101 :GHVQKMFDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88514 # 1dqaA.164.194 read from T0547.t06.many.frag # found chain 1dqaA in template set T0547 164 :EAIIDIAKE 1dqaA 616 :AVIKEAFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88515 # 1gxjA.164.69 read from T0547.t06.many.frag # found chain 1gxjA in template set T0547 164 :EAIIDIAKE 1gxjA 554 :KAIVEFLKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88516 # 1rttA.164.63 read from T0547.t06.many.frag # found chain 1rttA in training set T0547 164 :EAIIDIAKE 1rttA 64 :ERFREQIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88517 # 1yiiA.164.121 read from T0547.t06.many.frag # found chain 1yiiA in training set T0547 164 :EAIIDIAKE 1yiiA 123 :QNIKQVYMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88518 # 1ls1A.164.142 read from T0547.t06.many.frag # found chain 1ls1A in training set T0547 164 :EAIIDIAKE 1ls1A 143 :EQLRLLGEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88519 # 1vliA.164.173 read from T0547.t06.many.frag # found chain 1vliA in template set T0547 164 :EAIIDIAKE 1vliA 162 :HEAWRTIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88520 # 1muwA.164.161 read from T0547.t06.many.frag # found chain 1muwA in training set T0547 164 :EAIIDIAKE 1muwA 162 :DLLGEYVTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88521 # 1xovA.164.72 read from T0547.t06.many.frag # found chain 1xovA in template set T0547 164 :EAIIDIAKE 1xovA 61 :NKIVNWHNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88522 # 1m1nA.164.278 read from T0547.t06.many.frag # found chain 1m1nA in training set T0547 164 :EAIIDIAKE 1m1nA 280 :NYISRHMEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88523 # 1oi0A.164.11 read from T0547.t06.many.frag # found chain 1oi0A in training set T0547 164 :EAIIDIAKE 1oi0A 12 :KTILEAAKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88524 # 1zj8A.164.121 read from T0547.t06.many.frag # found chain 1zj8A in template set T0547 164 :EAIIDIAKE 1zj8A 111 :RTLGQISTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88525 # 1wcwA.164.172 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 164 :EAIIDIAKE 1wcwA 173 :LRLEEALLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88526 # 1y14A.164.126 read from T0547.t06.many.frag # found chain 1y14A in template set T0547 164 :EAIIDIAKE 1y14A 161 :GAVIQLLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88527 # 1ttzA.164.14 read from T0547.t06.many.frag # found chain 1ttzA in template set T0547 164 :EAIIDIAKE 1ttzA 15 :DQAVEALAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88528 # 1yrbA.164.99 read from T0547.t06.many.frag # found chain 1yrbA in training set T0547 164 :EAIIDIAKE 1yrbA 86 :NKILRLEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88529 # 1ok7A.164.72 read from T0547.t06.many.frag # found chain 1ok7A in training set T0547 164 :EAIIDIAKE 1ok7A 73 :RKFFDICRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88530 # 8abp.165.72 read from T0547.t06.many.frag # found chain 8abp in training set T0547 165 :AIIDIAKER 8abp 73 :AIVAKARGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=88531 # 1ct5A.165.120 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 165 :AIIDIAKER 1ct5A 122 :KLNESRAKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=88532 # 1zzmA.165.79 read from T0547.t06.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)R173 (1zzmA)R88 because L (left) conformation "forbidden" or filtered. T0547 165 :AIIDIAKE 1zzmA 80 :QLQQALER Number of specific fragments extracted= 1 number of extra gaps= 1 total=88533 # 1wn2A.165.69 read from T0547.t06.many.frag # found chain 1wn2A in training set T0547 165 :AIIDIAKER 1wn2A 70 :KLKAEAEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88534 # 1y1pA.165.49 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 165 :AIIDIAKER 1y1pA 51 :NLQKRWDAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88535 # 1em8A.165.50 read from T0547.t06.many.frag # found chain 1em8A in template set T0547 165 :AIIDIAKER 1em8A 51 :RLDEALWAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88536 # 1oi0A.165.12 read from T0547.t06.many.frag # found chain 1oi0A in training set T0547 165 :AIIDIAKER 1oi0A 13 :TILEAAKSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88537 # 1gxjA.165.70 read from T0547.t06.many.frag # found chain 1gxjA in template set T0547 165 :AIIDIAKER 1gxjA 555 :AIVEFLKQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=88538 # 1m1nA.165.279 read from T0547.t06.many.frag # found chain 1m1nA in training set T0547 165 :AIIDIAKER 1m1nA 281 :YISRHMEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88539 # 1vefA.165.209 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 165 :AIIDIAKER 1vefA 210 :AAREITQEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88540 # 1duvG.165.199 read from T0547.t06.many.frag # found chain 1duvG in training set T0547 165 :AIIDIAKER 1duvG 200 :ECRALAQQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=88541 # 1dqaA.165.195 read from T0547.t06.many.frag # found chain 1dqaA in template set T0547 165 :AIIDIAKER 1dqaA 617 :VIKEAFDST Number of specific fragments extracted= 1 number of extra gaps= 0 total=88542 # 1p99A.165.54 read from T0547.t06.many.frag # found chain 1p99A in template set T0547 165 :AIIDIAKER 1p99A 55 :KVKELAKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=88543 # 1vflA.165.162 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 165 :AIIDIAKER 1vflA 161 :EVVELCKKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=88544 # 1z5zA.165.126 read from T0547.t06.many.frag # found chain 1z5zA in template set T0547 165 :AIIDIAKER 1z5zA 762 :IIRNIIEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88545 # 1l1eA.165.101 read from T0547.t06.many.frag # found chain 1l1eA in template set T0547 165 :AIIDIAKER 1l1eA 102 :HVQKMFDQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=88546 # 1jalA.165.220 read from T0547.t06.many.frag # found chain 1jalA in template set T0547 165 :AIIDIAKER 1jalA 221 :RVREIAAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88547 # 1r6fA.165.11 read from T0547.t06.many.frag # found chain 1r6fA in template set T0547 165 :AIIDIAKER 1r6fA 34 :ELVQLVAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88548 # 1g61A.165.82 read from T0547.t06.many.frag # found chain 1g61A in training set Warning: unaligning (T0547)R173 (1g61A)N2091 because G (3-10) conformation "forbidden" or filtered. T0547 165 :AIIDIAKE 1g61A 2083 :RIKNFLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=88549 # 1ttzA.165.15 read from T0547.t06.many.frag # found chain 1ttzA in template set T0547 165 :AIIDIAKER 1ttzA 16 :QAVEALAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88550 # 2fn0A.165.21 read from T0547.t06.many.frag # found chain 2fn0A in template set T0547 165 :AIIDIAKER 2fn0A 19 :TISGVLRQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=88551 # 2a84A.165.48 read from T0547.t06.many.frag # found chain 2a84A in training set Warning: unaligning (T0547)R173 (2a84A)V57 because P (beta_P) conformation "forbidden" or filtered. T0547 165 :AIIDIAKE 2a84A 49 :ALVRAAKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=88552 # 1c4oA.165.67 read from T0547.t06.many.frag # found chain 1c4oA in template set T0547 165 :AIIDIAKER 1c4oA 69 :QLAAEFREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88553 # 1yiiA.165.122 read from T0547.t06.many.frag # found chain 1yiiA in training set T0547 165 :AIIDIAKER 1yiiA 124 :NIKQVYMQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88554 # 1zj8A.165.122 read from T0547.t06.many.frag # found chain 1zj8A in template set T0547 165 :AIIDIAKER 1zj8A 112 :TLGQISTEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=88555 # 2f02A.165.67 read from T0547.t06.many.frag # found chain 2f02A in template set T0547 165 :AIIDIAKER 2f02A 66 :FIANELKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88556 # 1jx6A.165.162 read from T0547.t06.many.frag # found chain 1jx6A in training set T0547 165 :AIIDIAKER 1jx6A 186 :ELATEFGKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=88557 # 1y5mA.165.56 read from T0547.t06.many.frag # found chain 1y5mA in template set T0547 165 :AIIDIAKER 1y5mA 73 :KVVSRCLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88558 # 2a0b.165.64 read from T0547.t06.many.frag # found chain 2a0b in training set T0547 165 :AIIDIAKER 2a0b 716 :KIKGAAGSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=88559 # 1p1mA.165.150 read from T0547.t06.many.frag # found chain 1p1mA in training set T0547 165 :AIIDIAKER 1p1mA 151 :ENLKLYNEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=88560 # 1zzmA.166.80 read from T0547.t06.many.frag # found chain 1zzmA in training set T0547 166 :IIDIAKERF 1zzmA 81 :LQQALERRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=88561 # 1oi0A.166.13 read from T0547.t06.many.frag # found chain 1oi0A in training set T0547 166 :IIDIAKERF 1oi0A 14 :ILEAAKSAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=88562 # 8abp.166.73 read from T0547.t06.many.frag # found chain 8abp in training set Warning: unaligning (T0547)F174 (8abp)D82 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 8abp 74 :IVAKARGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=88563 # 1m1nA.166.280 read from T0547.t06.many.frag # found chain 1m1nA in training set T0547 166 :IIDIAKERF 1m1nA 282 :ISRHMEEKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=88564 # 1ct5A.166.121 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 166 :IIDIAKERF 1ct5A 123 :LNESRAKFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88565 # 1dqaA.166.196 read from T0547.t06.many.frag # found chain 1dqaA in template set T0547 166 :IIDIAKERF 1dqaA 618 :IKEAFDSTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88566 # 1p1mA.166.151 read from T0547.t06.many.frag # found chain 1p1mA in training set T0547 166 :IIDIAKERF 1p1mA 152 :NLKLYNEWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=88567 # 1duvG.166.200 read from T0547.t06.many.frag # found chain 1duvG in training set Warning: unaligning (T0547)F174 (1duvG)G209 because T (delta_L) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1duvG 201 :CRALAQQN Number of specific fragments extracted= 1 number of extra gaps= 1 total=88568 # 1gxjA.166.71 read from T0547.t06.many.frag # found chain 1gxjA in template set T0547 166 :IIDIAKERF 1gxjA 556 :IVEFLKQNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88569 # 2fn0A.166.22 read from T0547.t06.many.frag # found chain 2fn0A in template set T0547 166 :IIDIAKERF 2fn0A 20 :ISGVLRQFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88570 # 1vflA.166.163 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 166 :IIDIAKERF 1vflA 162 :VVELCKKYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88571 # 1c4oA.166.68 read from T0547.t06.many.frag # found chain 1c4oA in template set T0547 166 :IIDIAKERF 1c4oA 70 :LAAEFRELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=88572 # 1z5zA.166.127 read from T0547.t06.many.frag # found chain 1z5zA in template set T0547 166 :IIDIAKERF 1z5zA 763 :IRNIIEKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88573 # 1zj8A.166.123 read from T0547.t06.many.frag # found chain 1zj8A in template set Warning: unaligning (T0547)F174 (1zj8A)A121 because G (3-10) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1zj8A 113 :LGQISTEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=88574 # 1y1pA.166.50 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 166 :IIDIAKERF 1y1pA 52 :LQKRWDAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=88575 # 1sqsA.166.23 read from T0547.t06.many.frag # found chain 1sqsA in training set T0547 166 :IIDIAKERF 1sqsA 24 :LSSIISSRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=88576 # 1tljA.166.116 read from T0547.t06.many.frag # found chain 1tljA in template set Warning: unaligning (T0547)F174 (1tljA)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1tljA 117 :ILKIAREA Number of specific fragments extracted= 1 number of extra gaps= 1 total=88577 # 1vefA.166.210 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 166 :IIDIAKERF 1vefA 211 :AREITQEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88578 # 1jx6A.166.163 read from T0547.t06.many.frag # found chain 1jx6A in training set T0547 166 :IIDIAKERF 1jx6A 187 :LATEFGKFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=88579 # 2axpA.166.44 read from T0547.t06.many.frag # found chain 2axpA in template set T0547 166 :IIDIAKERF 2axpA 45 :LFEHFNKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88580 # 1wn2A.166.70 read from T0547.t06.many.frag # found chain 1wn2A in training set Warning: unaligning (T0547)F174 (1wn2A)G79 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKER 1wn2A 71 :LKAEAEKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=88581 # 1nvmB.166.86 read from T0547.t06.many.frag # found chain 1nvmB in training set T0547 166 :IIDIAKERF 1nvmB 87 :NEALLRQAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88582 # 2a84A.166.49 read from T0547.t06.many.frag # found chain 2a84A in training set T0547 166 :IIDIAKERF 2a84A 50 :LVRAAKRVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=88583 # 1yiiA.166.123 read from T0547.t06.many.frag # found chain 1yiiA in training set T0547 166 :IIDIAKERF 1yiiA 125 :IKQVYMQEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=88584 # 1vjoA.166.123 read from T0547.t06.many.frag # found chain 1vjoA in training set T0547 166 :IIDIAKERF 1vjoA 112 :LVDMAGRYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88585 # 1sv6A.166.12 read from T0547.t06.many.frag # found chain 1sv6A in template set Warning: unaligning (T0547)R173 (1sv6A)G20 because L (left) conformation "forbidden" or filtered. T0547 166 :IIDIAKE 1sv6A 13 :LRRAAEQ T0547 174 :F 1sv6A 21 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=88587 # 1p99A.166.55 read from T0547.t06.many.frag # found chain 1p99A in template set T0547 166 :IIDIAKERF 1p99A 56 :VKELAKKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=88588 # 1ttzA.166.16 read from T0547.t06.many.frag # found chain 1ttzA in template set T0547 166 :IIDIAKERF 1ttzA 17 :AVEALAQAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88589 # 2avuE.166.39 read from T0547.t06.many.frag # found chain 2avuE in template set T0547 166 :IIDIAKERF 2avuE 40 :LIKLYKELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88590 # 1v6sA.166.170 read from T0547.t06.many.frag # found chain 1v6sA in training set T0547 166 :IIDIAKERF 1v6sA 171 :EVRALSRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88591 # 1oi0A.167.14 read from T0547.t06.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)K175 (1oi0A)P23 because C (cis) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1oi0A 15 :LEAAKSAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=88592 # 1m1nA.167.281 read from T0547.t06.many.frag # found chain 1m1nA in training set T0547 167 :IDIAKERFK 1m1nA 283 :SRHMEEKYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88593 # 1zzmA.167.81 read from T0547.t06.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)K175 (1zzmA)A90 because T (delta_L) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1zzmA 82 :QQALERRP Number of specific fragments extracted= 1 number of extra gaps= 1 total=88594 # 1dqaA.167.197 read from T0547.t06.many.frag # found chain 1dqaA in template set T0547 167 :IDIAKERFK 1dqaA 619 :KEAFDSTSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88595 # 1p1mA.167.152 read from T0547.t06.many.frag # found chain 1p1mA in training set T0547 167 :IDIAKERFK 1p1mA 153 :LKLYNEWNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88596 # 2fn0A.167.23 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)K175 (2fn0A)E29 because T (delta_L) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 2fn0A 21 :SGVLRQFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=88597 # 1jx6A.167.164 read from T0547.t06.many.frag # found chain 1jx6A in training set T0547 167 :IDIAKERFK 1jx6A 188 :ATEFGKFFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=88598 # 1z5zA.167.128 read from T0547.t06.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)K175 (1z5zA)N772 because L (left) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1z5zA 764 :RNIIEKEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=88599 # 1c4oA.167.69 read from T0547.t06.many.frag # found chain 1c4oA in template set T0547 167 :IDIAKERFK 1c4oA 71 :AAEFRELFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=88600 # 1vflA.167.164 read from T0547.t06.many.frag # found chain 1vflA in training set Warning: unaligning (T0547)K175 (1vflA)E171 because T (delta_L) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1vflA 163 :VELCKKYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=88601 # 1ct5A.167.122 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 167 :IDIAKERFK 1ct5A 124 :NESRAKFQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=88602 # 1gxjA.167.72 read from T0547.t06.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)F174 (1gxjA)E564 because L (left) conformation "forbidden" or filtered. T0547 167 :IDIAKER 1gxjA 557 :VEFLKQN T0547 175 :K 1gxjA 565 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=88604 # 2avuE.167.40 read from T0547.t06.many.frag # found chain 2avuE in template set T0547 167 :IDIAKERFK 2avuE 41 :IKLYKELRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88605 # 2axpA.167.45 read from T0547.t06.many.frag # found chain 2axpA in template set T0547 167 :IDIAKERFK 2axpA 46 :FEHFNKLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=88606 # 1zx0A.167.117 read from T0547.t06.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)K175 (1zx0A)D126 because P (beta_P) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1zx0A 118 :EDVAPTLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=88607 # 1y1pA.167.51 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 167 :IDIAKERFK 1y1pA 53 :QKRWDAKYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=88608 # 1nnfA.167.16 read from T0547.t06.many.frag # found chain 1nnfA in training set T0547 167 :IDIAKERFK 1nnfA 17 :AKAFEQETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88609 # 1v6sA.167.171 read from T0547.t06.many.frag # found chain 1v6sA in training set T0547 167 :IDIAKERFK 1v6sA 172 :VRALSRLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88610 # 1sqsA.167.24 read from T0547.t06.many.frag # found chain 1sqsA in training set T0547 167 :IDIAKERFK 1sqsA 25 :SSIISSRNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=88611 # 2a84A.167.50 read from T0547.t06.many.frag # found chain 2a84A in training set Warning: unaligning (T0547)K175 (2a84A)G59 because T (delta_L) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 2a84A 51 :VRAAKRVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=88612 # 1nvmB.167.87 read from T0547.t06.many.frag # found chain 1nvmB in training set T0547 167 :IDIAKERFK 1nvmB 88 :EALLRQAKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=88613 # 1zj8A.167.124 read from T0547.t06.many.frag # found chain 1zj8A in template set T0547 167 :IDIAKERFK 1zj8A 114 :GQISTEFAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=88614 # 1h70A.167.93 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 167 :IDIAKERFK 1h70A 93 :EETVQRFYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=88615 # 1zvdA.167.11 read from T0547.t06.many.frag # found chain 1zvdA in template set T0547 167 :IDIAKERFK 1zvdA 380 :RQELSQQQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=88616 # 1sr9A.167.199 read from T0547.t06.many.frag # found chain 1sr9A in template set T0547 167 :IDIAKERFK 1sr9A 200 :VEQAAKYPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88617 # 1sv6A.167.13 read from T0547.t06.many.frag # found chain 1sv6A in template set T0547 167 :IDIAKERFK 1sv6A 14 :RRAAEQGEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88618 # 2cvbA.167.55 read from T0547.t06.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)R173 (2cvbA)Y62 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (2cvbA)G64 because T (delta_L) conformation "forbidden" or filtered. T0547 167 :IDIAKE 2cvbA 56 :VALAER T0547 174 :F 2cvbA 63 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=88620 # 1yovA.167.92 read from T0547.t06.many.frag # found chain 1yovA in template set T0547 167 :IDIAKERFK 1yovA 90 :MEFLQELNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88621 # 1yiiA.167.124 read from T0547.t06.many.frag # found chain 1yiiA in training set Warning: unaligning (T0547)K175 (1yiiA)E134 because L (left) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1yiiA 126 :KQVYMQEY Number of specific fragments extracted= 1 number of extra gaps= 1 total=88622 # 1yzyA.167.290 read from T0547.t06.many.frag # found chain 1yzyA in template set Warning: unaligning (T0547)K175 (1yzyA)D298 because G (3-10) conformation "forbidden" or filtered. T0547 167 :IDIAKERF 1yzyA 290 :YQWVIANL Number of specific fragments extracted= 1 number of extra gaps= 1 total=88623 # 2avuE.168.41 read from T0547.t06.many.frag # found chain 2avuE in template set T0547 168 :DIAKERFKP 2avuE 42 :KLYKELRGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88624 # 1oi0A.168.15 read from T0547.t06.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)K175 (1oi0A)P23 because C (cis) conformation "forbidden" or filtered. T0547 168 :DIAKERF 1oi0A 16 :EAAKSAH T0547 176 :P 1oi0A 24 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=88626 # 1jx6A.168.165 read from T0547.t06.many.frag # found chain 1jx6A in training set T0547 168 :DIAKERFKP 1jx6A 189 :TEFGKFFPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88627 # 1nnfA.168.17 read from T0547.t06.many.frag # found chain 1nnfA in training set T0547 168 :DIAKERFKP 1nnfA 18 :KAFEQETGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=88628 # 2cvbA.168.56 read from T0547.t06.many.frag # found chain 2cvbA in training set T0547 168 :DIAKERFKP 2cvbA 57 :ALAERYRGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88629 # 1m1nA.168.282 read from T0547.t06.many.frag # found chain 1m1nA in training set T0547 168 :DIAKERFKP 1m1nA 284 :RHMEEKYGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=88630 # 2fn0A.168.24 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)K175 (2fn0A)E29 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (2fn0A)E30 because E (beta_S) conformation "forbidden" or filtered. T0547 168 :DIAKERF 2fn0A 22 :GVLRQFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=88631 # 1zx0A.168.118 read from T0547.t06.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)P176 (1zx0A)G127 because L (left) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1zx0A 119 :DVAPTLPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=88632 # 1p1mA.168.153 read from T0547.t06.many.frag # found chain 1p1mA in training set T0547 168 :DIAKERFKP 1p1mA 154 :KLYNEWNGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=88633 # 1z5zA.168.129 read from T0547.t06.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)P176 (1z5zA)T773 because E (beta_S) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1z5zA 765 :NIIEKELN Number of specific fragments extracted= 1 number of extra gaps= 1 total=88634 # 1sr9A.168.200 read from T0547.t06.many.frag # found chain 1sr9A in template set T0547 168 :DIAKERFKP 1sr9A 201 :EQAAKYPGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=88635 # 1zvdA.168.12 read from T0547.t06.many.frag # found chain 1zvdA in template set T0547 168 :DIAKERFKP 1zvdA 381 :QELSQQQPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88636 # 1y1pA.168.52 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)P176 (1y1pA)G62 because L (left) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1y1pA 54 :KRWDAKYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=88637 # 1gxjA.168.73 read from T0547.t06.many.frag # found chain 1gxjA in template set Warning: unaligning (T0547)F174 (1gxjA)E564 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1gxjA)G566 because Y (epsilon') conformation "forbidden" or filtered. T0547 168 :DIAKER 1gxjA 558 :EFLKQN T0547 175 :K 1gxjA 565 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=88639 # 1atg.168.18 read from T0547.t06.many.frag # found chain 1atg in training set Warning: unaligning (T0547)K175 (1atg)G27 because T (delta_L) conformation "forbidden" or filtered. T0547 168 :DIAKERF 1atg 20 :GQFAKQT T0547 176 :P 1atg 28 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=88641 # 1vyiA.168.17 read from T0547.t06.many.frag # found chain 1vyiA in training set T0547 168 :DIAKERFKP 1vyiA 203 :HQIAESFSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=88642 # 1ct5A.168.123 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)P176 (1ct5A)D133 because G (3-10) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1ct5A 125 :ESRAKFQP Number of specific fragments extracted= 1 number of extra gaps= 1 total=88643 # 1h70A.168.94 read from T0547.t06.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)P176 (1h70A)G102 because L (left) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1h70A 94 :ETVQRFYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=88644 # 1dozA.168.129 read from T0547.t06.many.frag # found chain 1dozA in template set Warning: unaligning (T0547)F174 (1dozA)G137 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1dozA)G138 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1dozA)L139 because E (beta_S) conformation "forbidden" or filtered. T0547 168 :DIAKER 1dozA 131 :EEAEKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=88645 # 2axpA.168.46 read from T0547.t06.many.frag # found chain 2axpA in template set T0547 168 :DIAKERFKP 2axpA 47 :EHFNKLADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88646 1wy9A expands to /projects/compbio/data/pdb/1wy9.pdb.gz 1wy9A:# 1wy9A.168.25 read from T0547.t06.many.frag # adding 1wy9A to template set # found chain 1wy9A in template set T0547 168 :DIAKERFKP 1wy9A 26 :GINKQFLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=88647 # 1c4oA.168.70 read from T0547.t06.many.frag # found chain 1c4oA in template set Warning: unaligning (T0547)P176 (1c4oA)E80 because G (3-10) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1c4oA 72 :AEFRELFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=88648 # 1dqaA.168.198 read from T0547.t06.many.frag # found chain 1dqaA in template set Warning: unaligning (T0547)P176 (1dqaA)F628 because G (3-10) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1dqaA 620 :EAFDSTSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=88649 # 1k78A.168.69 read from T0547.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0547)F174 (1k78A)G76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1k78A)I78 because G (3-10) conformation "forbidden" or filtered. T0547 168 :DIAKER 1k78A 70 :GRYYET T0547 175 :K 1k78A 77 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=88651 # 1yzyA.168.291 read from T0547.t06.many.frag # found chain 1yzyA in template set T0547 168 :DIAKERFKP 1yzyA 291 :QWVIANLDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=88652 # 1zzmA.168.82 read from T0547.t06.many.frag # found chain 1zzmA in training set Warning: unaligning (T0547)R173 (1zzmA)R88 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1zzmA)K91 because G (3-10) conformation "forbidden" or filtered. T0547 168 :DIAKE 1zzmA 83 :QALER T0547 174 :FK 1zzmA 89 :PA Number of specific fragments extracted= 2 number of extra gaps= 2 total=88654 # 1l8aA.168.452 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)P176 (1l8aA)Y461 because E (beta_S) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1l8aA 453 :AQRQKLHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=88655 # 1vflA.168.165 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 168 :DIAKERFKP 1vflA 164 :ELCKKYREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=88656 # 1nkiA.168.19 read from T0547.t06.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)K175 (1nkiA)G27 because T (delta_L) conformation "forbidden" or filtered. T0547 168 :DIAKERF 1nkiA 20 :AFYRDLL T0547 176 :P 1nkiA 28 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=88658 # 1hbnA.168.112 read from T0547.t06.many.frag # found chain 1hbnA in training set Warning: unaligning (T0547)P176 (1hbnA)K122 because E (beta_S) conformation "forbidden" or filtered. T0547 168 :DIAKERFK 1hbnA 114 :AVIEKRLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=88659 # 2avuE.169.42 read from T0547.t06.many.frag # found chain 2avuE in template set T0547 169 :IAKERFKPK 2avuE 43 :LYKELRGSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=88660 # 1jx6A.169.166 read from T0547.t06.many.frag # found chain 1jx6A in training set T0547 169 :IAKERFKPK 1jx6A 190 :EFGKFFPKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=88661 # 1nnfA.169.18 read from T0547.t06.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)K175 (1nnfA)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1nnfA)K27 because P (beta_P) conformation "forbidden" or filtered. T0547 169 :IAKERF 1nnfA 19 :AFEQET T0547 176 :P 1nnfA 26 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=88663 # 1m1nA.169.283 read from T0547.t06.many.frag # found chain 1m1nA in training set T0547 169 :IAKERFKPK 1m1nA 285 :HMEEKYGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=88664 # 1oi0A.169.16 read from T0547.t06.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)K175 (1oi0A)P23 because C (cis) conformation "forbidden" or filtered. T0547 169 :IAKERF 1oi0A 17 :AAKSAH T0547 176 :PK 1oi0A 24 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=88666 # 1nkiA.169.20 read from T0547.t06.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)F174 (1nkiA)L26 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1nkiA)G27 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1nkiA)R29 because P (beta_P) conformation "forbidden" or filtered. T0547 169 :IAKER 1nkiA 21 :FYRDL T0547 176 :P 1nkiA 28 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=88668 # 1z5zA.169.130 read from T0547.t06.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)K175 (1z5zA)N772 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z5zA)T773 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKERF 1z5zA 766 :IIEKEL T0547 177 :K 1z5zA 774 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=88670 # 1atg.169.19 read from T0547.t06.many.frag # found chain 1atg in training set T0547 169 :IAKERFKPK 1atg 21 :QFAKQTGHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88671 # 1vyiA.169.18 read from T0547.t06.many.frag # found chain 1vyiA in training set Warning: unaligning (T0547)K175 (1vyiA)S210 because G (3-10) conformation "forbidden" or filtered. T0547 169 :IAKERF 1vyiA 204 :QIAESF T0547 176 :PK 1vyiA 211 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=88673 # 2a2cA.169.44 read from T0547.t06.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)P176 (2a2cA)S32 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKERFK 2a2cA 25 :MFNSKFG T0547 177 :K 2a2cA 33 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=88675 # 1yzyA.169.292 read from T0547.t06.many.frag # found chain 1yzyA in template set T0547 169 :IAKERFKPK 1yzyA 292 :WVIANLDSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88676 # 1hbnA.169.113 read from T0547.t06.many.frag # found chain 1hbnA in training set Warning: unaligning (T0547)P176 (1hbnA)K122 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1hbnA 115 :VIEKRLG T0547 177 :K 1hbnA 123 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=88678 # 1k78A.169.70 read from T0547.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0547)F174 (1k78A)G76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1k78A)I78 because G (3-10) conformation "forbidden" or filtered. T0547 169 :IAKER 1k78A 71 :RYYET T0547 175 :K 1k78A 77 :S T0547 177 :K 1k78A 79 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=88681 # 1tr9A.169.48 read from T0547.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)K175 (1tr9A)K54 because T (delta_L) conformation "forbidden" or filtered. T0547 169 :IAKERF 1tr9A 48 :AIRQAA T0547 176 :PK 1tr9A 55 :RP Number of specific fragments extracted= 2 number of extra gaps= 1 total=88683 # 1h70A.169.95 read from T0547.t06.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)P176 (1h70A)G102 because L (left) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1h70A 95 :TVQRFYP T0547 177 :K 1h70A 103 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=88685 # 2axpA.169.47 read from T0547.t06.many.frag # found chain 2axpA in template set Warning: unaligning (T0547)K177 (2axpA)D56 because Y (epsilon') conformation "forbidden" or filtered. T0547 169 :IAKERFKP 2axpA 48 :HFNKLADE Number of specific fragments extracted= 1 number of extra gaps= 1 total=88686 # 2cvbA.169.57 read from T0547.t06.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)R173 (2cvbA)Y62 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (2cvbA)G64 because T (delta_L) conformation "forbidden" or filtered. T0547 169 :IAKE 2cvbA 58 :LAER T0547 174 :F 2cvbA 63 :R T0547 176 :PK 2cvbA 65 :KV Number of specific fragments extracted= 3 number of extra gaps= 2 total=88689 # 1zvdA.169.13 read from T0547.t06.many.frag # found chain 1zvdA in template set T0547 169 :IAKERFKPK 1zvdA 382 :ELSQQQPQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88690 # 1gvnA.169.78 read from T0547.t06.many.frag # found chain 1gvnA in template set T0547 169 :IAKERFKPK 1gvnA 79 :YSKQVLNKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=88691 # 1y1pA.169.53 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)P176 (1y1pA)G62 because L (left) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1y1pA 55 :RWDAKYP T0547 177 :K 1y1pA 63 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=88693 # 1c4oA.169.71 read from T0547.t06.many.frag # found chain 1c4oA in template set Warning: unaligning (T0547)P176 (1c4oA)E80 because G (3-10) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1c4oA 73 :EFRELFP T0547 177 :K 1c4oA 81 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=88695 # 1wuiL.169.134 read from T0547.t06.many.frag # found chain 1wuiL in training set Warning: unaligning (T0547)K175 because of BadResidue code BAD_PEPTIDE in next template residue (1wuiL)R160 Warning: unaligning (T0547)P176 because of BadResidue code BAD_PEPTIDE at template residue (1wuiL)R160 Warning: unaligning (T0547)K177 (1wuiL)K161 because P (beta_P) conformation "forbidden" or filtered. T0547 169 :IAKERF 1wuiL 153 :VASSIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=88696 # 1za0A.169.23 read from T0547.t06.many.frag # found chain 1za0A in template set Warning: unaligning (T0547)K175 because of BadResidue code BAD_PEPTIDE in next template residue (1za0A)I31 Warning: unaligning (T0547)P176 because of BadResidue code BAD_PEPTIDE at template residue (1za0A)I31 T0547 169 :IAKERF 1za0A 24 :RHLDTE T0547 177 :K 1za0A 32 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=88698 # 1sr9A.169.201 read from T0547.t06.many.frag # found chain 1sr9A in template set Warning: unaligning (T0547)K175 (1sr9A)G208 because T (delta_L) conformation "forbidden" or filtered. T0547 169 :IAKERF 1sr9A 202 :QAAKYP T0547 176 :PK 1sr9A 209 :TQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=88700 # 2fn0A.169.25 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)K175 (2fn0A)E29 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (2fn0A)E30 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKERF 2fn0A 23 :VLRQFA T0547 177 :K 2fn0A 31 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=88702 # 1zj8A.169.126 read from T0547.t06.many.frag # found chain 1zj8A in template set Warning: unaligning (T0547)K175 (1zj8A)R122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1zj8A)D123 because T (delta_L) conformation "forbidden" or filtered. T0547 169 :IAKERF 1zj8A 116 :ISTEFA T0547 177 :K 1zj8A 124 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=88704 # 1ct5A.169.124 read from T0547.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0547)P176 (1ct5A)D133 because G (3-10) conformation "forbidden" or filtered. T0547 169 :IAKERFK 1ct5A 126 :SRAKFQP T0547 177 :K 1ct5A 134 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=88706 # 1dozA.169.130 read from T0547.t06.many.frag # found chain 1dozA in template set Warning: unaligning (T0547)F174 (1dozA)G137 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1dozA)G138 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1dozA)L139 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKER 1dozA 132 :EAEKL T0547 177 :K 1dozA 140 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=88708 # 1y8aA.169.133 read from T0547.t06.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K175 (1y8aA)G118 because L (left) conformation "forbidden" or filtered. T0547 169 :IAKERF 1y8aA 112 :RTASMI T0547 176 :PK 1y8aA 119 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=88710 # 1yiiA.169.126 read from T0547.t06.many.frag # found chain 1yiiA in training set Warning: unaligning (T0547)K175 (1yiiA)E134 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1yiiA)A135 because E (beta_S) conformation "forbidden" or filtered. T0547 169 :IAKERF 1yiiA 128 :VYMQEY T0547 177 :K 1yiiA 136 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=88712 # 2avuE.170.43 read from T0547.t06.many.frag # found chain 2avuE in template set T0547 170 :AKERFKPKP 2avuE 44 :YKELRGSPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=88713 # 1jx6A.170.167 read from T0547.t06.many.frag # found chain 1jx6A in training set T0547 170 :AKERFKPKP 1jx6A 191 :FGKFFPKHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=88714 # 1i24A.170.70 read from T0547.t06.many.frag # found chain 1i24A in template set T0547 170 :AKERFKPKP 1i24A 61 :WKALTGKSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=88715 # 1nnfA.170.19 read from T0547.t06.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)P178 (1nnfA)V28 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKPK 1nnfA 20 :FEQETGIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=88716 # 1m1nA.170.284 read from T0547.t06.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)K175 (1m1nA)G291 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1m1nA)P293 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1m1nA)W294 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERF 1m1nA 286 :MEEKY T0547 176 :P 1m1nA 292 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=88718 # 2a2cA.170.45 read from T0547.t06.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)P176 (2a2cA)S32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2a2cA)I33 because P (beta_P) conformation "forbidden" or filtered. T0547 170 :AKERFK 2a2cA 26 :FNSKFG T0547 178 :P 2a2cA 34 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=88720 # 1oi0A.170.17 read from T0547.t06.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)K175 (1oi0A)P23 because C (cis) conformation "forbidden" or filtered. T0547 170 :AKERF 1oi0A 18 :AKSAH T0547 176 :PKP 1oi0A 24 :DEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=88722 # 1z5zA.170.131 read from T0547.t06.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)P176 (1z5zA)T773 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1z5zA)V775 because D (zeta) conformation "forbidden" or filtered. T0547 170 :AKERFK 1z5zA 767 :IEKELN T0547 177 :K 1z5zA 774 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=88724 # 1nkiA.170.21 read from T0547.t06.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)K175 (1nkiA)G27 because T (delta_L) conformation "forbidden" or filtered. T0547 170 :AKERF 1nkiA 22 :YRDLL T0547 176 :PKP 1nkiA 28 :FRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88726 # 1atg.170.20 read from T0547.t06.many.frag # found chain 1atg in training set Warning: unaligning (T0547)K175 (1atg)G27 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1atg)V30 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERF 1atg 22 :FAKQT T0547 176 :PK 1atg 28 :HA Number of specific fragments extracted= 2 number of extra gaps= 2 total=88728 # 1nu0A.170.82 read from T0547.t06.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)F174 (1nu0A)F87 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nu0A)V91 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKER 1nu0A 83 :IHGR T0547 175 :KPK 1nu0A 88 :GVE Number of specific fragments extracted= 2 number of extra gaps= 2 total=88730 # 1tr9A.170.49 read from T0547.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)P178 (1tr9A)I57 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKPK 1tr9A 49 :IRQAAKRP Number of specific fragments extracted= 1 number of extra gaps= 1 total=88731 # 2cvbA.170.58 read from T0547.t06.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)K175 (2cvbA)G64 because T (delta_L) conformation "forbidden" or filtered. T0547 170 :AKERF 2cvbA 59 :AERYR T0547 176 :PKP 2cvbA 65 :KVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88733 # 1y8aA.170.134 read from T0547.t06.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K175 (1y8aA)G118 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1y8aA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0547 170 :AKERF 1y8aA 113 :TASMI T0547 176 :PK 1y8aA 119 :VR Number of specific fragments extracted= 2 number of extra gaps= 2 total=88735 # 1vdkA.170.249 read from T0547.t06.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)P176 (1vdkA)L256 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFK 1vdkA 250 :LAEETG T0547 177 :KP 1vdkA 257 :PF Number of specific fragments extracted= 2 number of extra gaps= 1 total=88737 # 1bupA.170.130 read from T0547.t06.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)K175 (1bupA)G136 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1bupA)K137 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1bupA)V139 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERF 1bupA 131 :AEAYL T0547 177 :K 1bupA 138 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=88739 # 1z7aA.170.151 read from T0547.t06.many.frag # found chain 1z7aA in training set Warning: unaligning (T0547)P176 (1z7aA)Q158 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFK 1z7aA 152 :LTELTG T0547 177 :KP 1z7aA 159 :RP Number of specific fragments extracted= 2 number of extra gaps= 1 total=88741 # 1h70A.170.96 read from T0547.t06.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)P176 (1h70A)G102 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1h70A)V104 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFK 1h70A 96 :VQRFYP T0547 177 :K 1h70A 103 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=88743 # 1l8aA.170.454 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)K175 (1l8aA)G460 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1l8aA)Y461 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERF 1l8aA 455 :RQKLH T0547 177 :KP 1l8aA 462 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=88745 # 1vyiA.170.19 read from T0547.t06.many.frag # found chain 1vyiA in training set Warning: unaligning (T0547)P178 (1vyiA)Y213 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKPK 1vyiA 205 :IAESFSKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=88746 # 1vjrA.170.180 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)P176 (1vjrA)R175 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFK 1vjrA 169 :IEASTG T0547 177 :KP 1vjrA 176 :KP Number of specific fragments extracted= 2 number of extra gaps= 1 total=88748 # 1xkrA.170.26 read from T0547.t06.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)F174 (1xkrA)I30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1xkrA)K32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1xkrA)V34 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKER 1xkrA 26 :ISYM T0547 175 :K 1xkrA 31 :N T0547 177 :K 1xkrA 33 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=88751 # 1zvdA.170.14 read from T0547.t06.many.frag # found chain 1zvdA in template set Warning: unaligning (T0547)P178 (1zvdA)G391 because S (epsilon) conformation "forbidden" or filtered. T0547 170 :AKERFKPK 1zvdA 383 :LSQQQPQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=88752 # 1k78A.170.71 read from T0547.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0547)P176 (1k78A)I78 because G (3-10) conformation "forbidden" or filtered. T0547 170 :AKERFK 1k78A 72 :YYETGS T0547 177 :KP 1k78A 79 :KP Number of specific fragments extracted= 2 number of extra gaps= 1 total=88754 # 2aqjA.170.23 read from T0547.t06.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFK 2aqjA 24 :LVRALQ T0547 177 :K 2aqjA 31 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=88756 # 2axpA.170.48 read from T0547.t06.many.frag # found chain 2axpA in template set Warning: unaligning (T0547)K177 (2axpA)D56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2axpA)N57 because L (left) conformation "forbidden" or filtered. T0547 170 :AKERFKP 2axpA 49 :FNKLADE Number of specific fragments extracted= 1 number of extra gaps= 1 total=88757 # 1h99A.170.27 read from T0547.t06.many.frag # found chain 1h99A in training set Warning: unaligning (T0547)P176 (1h99A)K87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1h99A)K88 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1h99A)L89 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFK 1h99A 81 :AKLQLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=88758 # 1dozA.170.131 read from T0547.t06.many.frag # found chain 1dozA in template set Warning: unaligning (T0547)F174 (1dozA)G137 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1dozA)G138 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1dozA)L139 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1dozA)I141 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKER 1dozA 133 :AEKL T0547 177 :K 1dozA 140 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=88760 # 1su8A.170.385 read from T0547.t06.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)K177 (1su8A)P393 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1su8A)V394 because E (beta_S) conformation "forbidden" or filtered. T0547 170 :AKERFKP 1su8A 386 :FKRRKGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=88761 # 1dp4A.170.174 read from T0547.t06.many.frag # found chain 1dp4A in template set Warning: unaligning (T0547)K175 (1dp4A)N180 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1dp4A)V183 because D (zeta) conformation "forbidden" or filtered. T0547 170 :AKERF 1dp4A 175 :VRERL T0547 176 :PK 1dp4A 181 :IT Number of specific fragments extracted= 2 number of extra gaps= 2 total=88763 # 1i24A.171.71 read from T0547.t06.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)K175 (1i24A)G66 because T (delta_L) conformation "forbidden" or filtered. T0547 171 :KERF 1i24A 62 :KALT T0547 176 :PKPN 1i24A 67 :KSIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=88765 # 2a2cA.171.46 read from T0547.t06.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)P176 (2a2cA)S32 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFK 2a2cA 27 :NSKFG T0547 177 :KPN 2a2cA 33 :IPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=88767 # 1z7aA.171.152 read from T0547.t06.many.frag # found chain 1z7aA in training set Warning: unaligning (T0547)K175 (1z7aA)G157 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z7aA)Q158 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1z7aA)R159 because P (beta_P) conformation "forbidden" or filtered. T0547 171 :KERF 1z7aA 153 :TELT T0547 178 :PN 1z7aA 160 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=88769 # 1tr9A.171.50 read from T0547.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)K175 (1tr9A)K54 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1tr9A)I57 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1tr9A 50 :RQAA T0547 176 :PK 1tr9A 55 :RP T0547 179 :N 1tr9A 58 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=88772 # 1vdkA.171.250 read from T0547.t06.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)K175 (1vdkA)G255 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1vdkA)L256 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1vdkA)R259 because Y (epsilon') conformation "forbidden" or filtered. T0547 171 :KERF 1vdkA 251 :AEET T0547 177 :KP 1vdkA 257 :PF Number of specific fragments extracted= 2 number of extra gaps= 2 total=88774 # 1oi0A.171.18 read from T0547.t06.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)K175 (1oi0A)P23 because C (cis) conformation "forbidden" or filtered. T0547 171 :KERF 1oi0A 19 :KSAH T0547 176 :PKPN 1oi0A 24 :DEFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=88776 # 1z5zA.171.132 read from T0547.t06.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)K175 (1z5zA)N772 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z5zA)T773 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1z5zA)V775 because D (zeta) conformation "forbidden" or filtered. T0547 171 :KERF 1z5zA 768 :EKEL T0547 177 :K 1z5zA 774 :E T0547 179 :N 1z5zA 776 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=88779 # 1nnfA.171.20 read from T0547.t06.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)K175 (1nnfA)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nnfA)V28 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1nnfA 21 :EQET T0547 176 :PK 1nnfA 26 :IK T0547 179 :N 1nnfA 29 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=88782 # 2avuE.171.44 read from T0547.t06.many.frag # found chain 2avuE in template set T0547 171 :KERFKPKPN 2avuE 45 :KELRGSPPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=88783 # 1bupA.171.131 read from T0547.t06.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)P176 (1bupA)K137 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1bupA)V139 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFK 1bupA 132 :EAYLG T0547 177 :K 1bupA 138 :T T0547 179 :N 1bupA 140 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=88786 # 1nu0A.171.83 read from T0547.t06.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)K175 (1nu0A)G88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nu0A)V91 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1nu0A 84 :HGRF T0547 176 :PK 1nu0A 89 :VE T0547 179 :N 1nu0A 92 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=88789 # 1jx6A.171.168 read from T0547.t06.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)K177 (1jx6A)H198 because L (left) conformation "forbidden" or filtered. T0547 171 :KERFKP 1jx6A 192 :GKFFPK T0547 178 :PN 1jx6A 199 :TY Number of specific fragments extracted= 2 number of extra gaps= 1 total=88791 # 2aqjA.171.24 read from T0547.t06.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFK 2aqjA 25 :VRALQ T0547 177 :K 2aqjA 31 :Q T0547 179 :N 2aqjA 33 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=88794 # 1y8aA.171.135 read from T0547.t06.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)P178 (1y8aA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0547 171 :KERFKPK 1y8aA 114 :ASMIGVR T0547 179 :N 1y8aA 122 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=88796 # 1vjrA.171.181 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)K175 (1vjrA)G174 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1vjrA)R175 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1vjrA 170 :EAST T0547 177 :KPN 1vjrA 176 :KPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=88798 # 2cvbA.171.59 read from T0547.t06.many.frag # found chain 2cvbA in training set T0547 171 :KERFKPKPN 2cvbA 60 :ERYRGKVAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=88799 # 1atg.171.21 read from T0547.t06.many.frag # found chain 1atg in training set Warning: unaligning (T0547)K175 (1atg)G27 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1atg)V30 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1atg 23 :AKQT T0547 176 :PK 1atg 28 :HA T0547 179 :N 1atg 31 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=88802 # 1dj0A.171.37 read from T0547.t06.many.frag # found chain 1dj0A in training set Warning: unaligning (T0547)P176 (1dj0A)E49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1dj0A)I51 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFK 1dj0A 44 :SQVAN T0547 177 :K 1dj0A 50 :P T0547 179 :N 1dj0A 52 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=88805 # 1h70A.171.97 read from T0547.t06.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)K175 (1h70A)P101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1h70A)G102 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1h70A)V104 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1h70A 97 :QRFY T0547 177 :K 1h70A 103 :K T0547 179 :N 1h70A 105 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=88808 # 1m1nA.171.285 read from T0547.t06.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)K175 (1m1nA)G291 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1m1nA)P293 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1m1nA)W294 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1m1nA 287 :EEKY T0547 176 :P 1m1nA 292 :I T0547 179 :N 1m1nA 295 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=88811 # 1kyqA.171.127 read from T0547.t06.many.frag # found chain 1kyqA in template set T0547 171 :KERFKPKPN 1kyqA 128 :KERFGKQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88812 # 1su8A.171.386 read from T0547.t06.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)R173 (1su8A)R389 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1su8A)G391 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1su8A)V394 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KE 1su8A 387 :KR T0547 174 :F 1su8A 390 :K T0547 176 :PK 1su8A 392 :KP T0547 179 :N 1su8A 395 :E Number of specific fragments extracted= 4 number of extra gaps= 3 total=88816 # 1z90A.171.121 read from T0547.t06.many.frag # found chain 1z90A in template set T0547 171 :KERFKPKPN 1z90A 122 :NNKYGCKVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=88817 # 1a4iA.171.28 read from T0547.t06.many.frag # found chain 1a4iA in training set Warning: unaligning (T0547)K177 (1a4iA)T35 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFKP 1a4iA 29 :EQVPGF T0547 178 :PN 1a4iA 36 :PR Number of specific fragments extracted= 2 number of extra gaps= 1 total=88819 # 1pgjA.171.62 read from T0547.t06.many.frag # found chain 1pgjA in template set Warning: unaligning (T0547)K177 (1pgjA)P69 because C (cis) conformation "forbidden" or filtered. T0547 171 :KERFKP 1pgjA 63 :AASLKK T0547 178 :PN 1pgjA 70 :RK Number of specific fragments extracted= 2 number of extra gaps= 1 total=88821 # 1xkrA.171.27 read from T0547.t06.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)K175 (1xkrA)N31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1xkrA)K32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1xkrA)V34 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1xkrA 27 :SYMI T0547 177 :K 1xkrA 33 :K T0547 179 :N 1xkrA 35 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=88824 # 2axpA.171.49 read from T0547.t06.many.frag # found chain 2axpA in template set Warning: unaligning (T0547)K177 (2axpA)D56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2axpA)N57 because L (left) conformation "forbidden" or filtered. T0547 171 :KERFKP 2axpA 50 :NKLADE T0547 179 :N 2axpA 58 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=88826 # 1h99A.171.28 read from T0547.t06.many.frag # found chain 1h99A in training set Warning: unaligning (T0547)K175 (1h99A)G86 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1h99A)K87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1h99A)K88 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1h99A)L89 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERF 1h99A 82 :KLQL T0547 179 :N 1h99A 90 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=88828 # 1zx0A.171.121 read from T0547.t06.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)P176 (1zx0A)G127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1zx0A)F129 because E (beta_S) conformation "forbidden" or filtered. T0547 171 :KERFK 1zx0A 122 :PTLPD T0547 177 :K 1zx0A 128 :H T0547 179 :N 1zx0A 130 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=88831 # 1nkiA.171.22 read from T0547.t06.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)K177 (1nkiA)R29 because P (beta_P) conformation "forbidden" or filtered. T0547 171 :KERFKP 1nkiA 23 :RDLLGF T0547 178 :PN 1nkiA 30 :LE Number of specific fragments extracted= 2 number of extra gaps= 1 total=88833 # 1i24A.172.72 read from T0547.t06.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)K175 (1i24A)G66 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1i24A)S68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1i24A)E70 because P (beta_P) conformation "forbidden" or filtered. T0547 172 :ERF 1i24A 63 :ALT T0547 176 :P 1i24A 67 :K T0547 178 :P 1i24A 69 :I T0547 180 :I 1i24A 71 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=88837 # 2a2cA.172.47 read from T0547.t06.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)F174 (2a2cA)F30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (2a2cA)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (2a2cA)S32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2a2cA)I33 because P (beta_P) conformation "forbidden" or filtered. T0547 172 :ER 2a2cA 28 :SK T0547 178 :PNI 2a2cA 34 :PKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=88839 # 2cvbA.172.60 read from T0547.t06.many.frag # found chain 2cvbA in training set Warning: unaligning (T0547)R173 (2cvbA)Y62 because G (3-10) conformation "forbidden" or filtered. T0547 172 :E 2cvbA 61 :R T0547 174 :FKPKPNI 2cvbA 63 :RGKVAFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=88841 # 1z7aA.172.153 read from T0547.t06.many.frag # found chain 1z7aA in training set Warning: unaligning (T0547)K175 (1z7aA)G157 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z7aA)Q158 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERF 1z7aA 154 :ELT T0547 177 :KPNI 1z7aA 159 :RPVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=88843 # 1tr9A.172.51 read from T0547.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)K175 (1tr9A)K54 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1tr9A)P56 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1tr9A)I57 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERF 1tr9A 51 :QAA T0547 176 :P 1tr9A 55 :R T0547 179 :NI 1tr9A 58 :LI Number of specific fragments extracted= 3 number of extra gaps= 2 total=88846 # 1nu0A.172.84 read from T0547.t06.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)K175 (1nu0A)G88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nu0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1nu0A)K92 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERF 1nu0A 85 :GRF T0547 176 :PK 1nu0A 89 :VE T0547 180 :I 1nu0A 93 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=88849 # 1vdkA.172.251 read from T0547.t06.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)K175 (1vdkA)G255 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1vdkA)L256 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1vdkA)R259 because Y (epsilon') conformation "forbidden" or filtered. T0547 172 :ERF 1vdkA 252 :EET T0547 177 :KP 1vdkA 257 :PF T0547 180 :I 1vdkA 260 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=88852 # 2aqjA.172.25 read from T0547.t06.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFK 2aqjA 26 :RALQ T0547 177 :K 2aqjA 31 :Q T0547 179 :NI 2aqjA 33 :NI Number of specific fragments extracted= 3 number of extra gaps= 2 total=88855 # 1nnfA.172.21 read from T0547.t06.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)K175 (1nnfA)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nnfA)V28 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERF 1nnfA 22 :QET T0547 176 :PK 1nnfA 26 :IK T0547 179 :NI 1nnfA 29 :TL Number of specific fragments extracted= 3 number of extra gaps= 2 total=88858 # 1e0tA.172.54 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)P178 (1e0tA)A61 because Y (epsilon') conformation "forbidden" or filtered. T0547 172 :ERFKPK 1e0tA 55 :SKTGKT T0547 179 :NI 1e0tA 62 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=88860 # 1jx6A.172.169 read from T0547.t06.many.frag # found chain 1jx6A in training set T0547 172 :ERFKPKPNI 1jx6A 193 :KFFPKHTYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=88861 # 1a4iA.172.29 read from T0547.t06.many.frag # found chain 1a4iA in training set T0547 172 :ERFKPKPNI 1a4iA 30 :QVPGFTPRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=88862 # 1z90A.172.122 read from T0547.t06.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)K175 (1z90A)G126 because T (delta_L) conformation "forbidden" or filtered. T0547 172 :ERF 1z90A 123 :NKY T0547 176 :PKPNI 1z90A 127 :CKVPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88864 # 1y8aA.172.136 read from T0547.t06.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)F174 (1y8aA)I117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1y8aA)G118 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1y8aA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0547 172 :ER 1y8aA 115 :SM T0547 176 :PK 1y8aA 119 :VR T0547 179 :NI 1y8aA 122 :EL Number of specific fragments extracted= 3 number of extra gaps= 2 total=88867 # 1oi0A.172.19 read from T0547.t06.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)K175 (1oi0A)P23 because C (cis) conformation "forbidden" or filtered. T0547 172 :ERF 1oi0A 20 :SAH T0547 176 :PKPNI 1oi0A 24 :DEFIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88869 # 1atg.172.22 read from T0547.t06.many.frag # found chain 1atg in training set Warning: unaligning (T0547)K175 (1atg)G27 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1atg)V30 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERF 1atg 24 :KQT T0547 176 :PK 1atg 28 :HA T0547 179 :NI 1atg 31 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=88872 # 1kyqA.172.128 read from T0547.t06.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)K175 (1kyqA)G132 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1kyqA)L136 because P (beta_P) conformation "forbidden" or filtered. T0547 172 :ERF 1kyqA 129 :ERF T0547 176 :PKP 1kyqA 133 :KQQ T0547 180 :I 1kyqA 137 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=88875 # 1itxA.172.207 read from T0547.t06.many.frag # found chain 1itxA in training set Warning: unaligning (T0547)F174 (1itxA)D242 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1itxA)G243 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1itxA)K244 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1itxA)Y246 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ER 1itxA 240 :AV T0547 177 :K 1itxA 245 :K T0547 179 :NI 1itxA 247 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=88878 # 1zx0A.172.122 read from T0547.t06.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)P176 (1zx0A)G127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1zx0A)F129 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFK 1zx0A 123 :TLPD T0547 177 :K 1zx0A 128 :H T0547 179 :NI 1zx0A 130 :DG Number of specific fragments extracted= 3 number of extra gaps= 2 total=88881 # 1pgjA.172.63 read from T0547.t06.many.frag # found chain 1pgjA in template set Warning: unaligning (T0547)K177 (1pgjA)P69 because C (cis) conformation "forbidden" or filtered. T0547 172 :ERFKP 1pgjA 64 :ASLKK T0547 178 :PNI 1pgjA 70 :RKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88883 # 1bupA.172.132 read from T0547.t06.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)K175 (1bupA)G136 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1bupA)K137 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1bupA)V139 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERF 1bupA 133 :AYL T0547 177 :K 1bupA 138 :T T0547 179 :NI 1bupA 140 :TN Number of specific fragments extracted= 3 number of extra gaps= 2 total=88886 # 1m55A.172.68 read from T0547.t06.many.frag # found chain 1m55A in training set Warning: unaligning (T0547)P176 (1m55A)Q73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1m55A)K76 because P (beta_P) conformation "forbidden" or filtered. T0547 172 :ERFK 1m55A 69 :KFSK T0547 177 :KP 1m55A 74 :ES T0547 180 :I 1m55A 77 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=88889 # 1cvrA.172.63 read from T0547.t06.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)K175 (1cvrA)G67 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1cvrA)N68 because L (left) conformation "forbidden" or filtered. T0547 172 :ERF 1cvrA 64 :EKE T0547 177 :KPNI 1cvrA 69 :DLTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=88891 # 1z5zA.172.133 read from T0547.t06.many.frag # found chain 1z5zA in template set Warning: unaligning (T0547)P176 (1z5zA)T773 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1z5zA)V775 because D (zeta) conformation "forbidden" or filtered. T0547 172 :ERFK 1z5zA 769 :KELN T0547 177 :K 1z5zA 774 :E T0547 179 :NI 1z5zA 776 :PF Number of specific fragments extracted= 3 number of extra gaps= 2 total=88894 # 1vjrA.172.182 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)P176 (1vjrA)R175 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFK 1vjrA 171 :ASTG T0547 177 :KPNI 1vjrA 176 :KPDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88896 # 1n8kA.172.255 read from T0547.t06.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)K175 (1n8kA)N259 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1n8kA)G260 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1n8kA)G261 because S (epsilon) conformation "forbidden" or filtered. T0547 172 :ERF 1n8kA 256 :EMS T0547 178 :PNI 1n8kA 262 :VDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=88898 # 1fcqA.172.253 read from T0547.t06.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)P176 (1fcqA)S258 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1fcqA)K261 because P (beta_P) conformation "forbidden" or filtered. T0547 172 :ERFK 1fcqA 254 :QMTT T0547 177 :KP 1fcqA 259 :RK T0547 180 :I 1fcqA 262 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=88901 # 1y7tA.172.27 read from T0547.t06.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)P178 (1y7tA)Q33 because D (zeta) conformation "forbidden" or filtered. T0547 172 :ERFKPK 1y7tA 27 :EMLGKD T0547 179 :NI 1y7tA 34 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=88903 # 1dj0A.172.38 read from T0547.t06.many.frag # found chain 1dj0A in training set Warning: unaligning (T0547)P176 (1dj0A)E49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1dj0A)I51 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERFK 1dj0A 45 :QVAN T0547 177 :K 1dj0A 50 :P T0547 179 :NI 1dj0A 52 :TV Number of specific fragments extracted= 3 number of extra gaps= 2 total=88906 # 2az4A.172.290 read from T0547.t06.many.frag # found chain 2az4A in template set Warning: unaligning (T0547)K175 (2az4A)G294 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2az4A)V297 because E (beta_S) conformation "forbidden" or filtered. T0547 172 :ERF 2az4A 291 :EVF T0547 176 :PK 2az4A 295 :IE T0547 179 :NI 2az4A 298 :RY Number of specific fragments extracted= 3 number of extra gaps= 2 total=88909 # 1e0tA.173.55 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)K177 (1e0tA)T60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1e0tA)A61 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1e0tA)A62 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1e0tA)L64 because P (beta_P) conformation "forbidden" or filtered. T0547 173 :RFKP 1e0tA 56 :KTGK T0547 180 :I 1e0tA 63 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=88911 # 2aqjA.173.26 read from T0547.t06.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFK 2aqjA 27 :ALQ T0547 177 :K 2aqjA 31 :Q T0547 179 :NIG 2aqjA 33 :NIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=88914 # 2a2cA.173.48 read from T0547.t06.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K175 (2a2cA)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (2a2cA)S32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2a2cA)I33 because P (beta_P) conformation "forbidden" or filtered. T0547 173 :RF 2a2cA 29 :KF T0547 178 :PNIG 2a2cA 34 :PKFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=88916 # 2cvbA.173.61 read from T0547.t06.many.frag # found chain 2cvbA in training set T0547 173 :RFKPKPNIG 2cvbA 62 :YRGKVAFVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=88917 # 1i24A.173.73 read from T0547.t06.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)G181 (1i24A)Y72 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFKPKPNI 1i24A 64 :LTGKSIEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=88918 # 1a4iA.173.30 read from T0547.t06.many.frag # found chain 1a4iA in training set T0547 173 :RFKPKPNIG 1a4iA 31 :VPGFTPRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88919 # 1cvrA.173.64 read from T0547.t06.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)P176 (1cvrA)N68 because L (left) conformation "forbidden" or filtered. T0547 173 :RFK 1cvrA 65 :KEG T0547 177 :KPNIG 1cvrA 69 :DLTYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=88921 # 1tr9A.173.52 read from T0547.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)K175 (1tr9A)K54 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1tr9A)I57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1tr9A)G60 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RF 1tr9A 52 :AA T0547 176 :PK 1tr9A 55 :RP T0547 179 :NI 1tr9A 58 :LI Number of specific fragments extracted= 3 number of extra gaps= 3 total=88924 # 1jx6A.173.170 read from T0547.t06.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)K177 (1jx6A)H198 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I180 (1jx6A)Y201 because Y (epsilon') conformation "forbidden" or filtered. T0547 173 :RFKP 1jx6A 194 :FFPK T0547 178 :PN 1jx6A 199 :TY T0547 181 :G 1jx6A 202 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=88927 # 1itxA.173.208 read from T0547.t06.many.frag # found chain 1itxA in training set Warning: unaligning (T0547)P176 (1itxA)K244 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1itxA)Y246 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFK 1itxA 241 :VDG T0547 177 :K 1itxA 245 :K T0547 179 :NIG 1itxA 247 :LLT Number of specific fragments extracted= 3 number of extra gaps= 2 total=88930 # 1z90A.173.123 read from T0547.t06.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)G181 (1z90A)V132 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFKPKPNI 1z90A 124 :KYGCKVPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=88931 # 1zx0A.173.123 read from T0547.t06.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)K175 (1zx0A)D126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1zx0A)G127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1zx0A)F129 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RF 1zx0A 124 :LP T0547 177 :K 1zx0A 128 :H T0547 179 :NIG 1zx0A 130 :DGI Number of specific fragments extracted= 3 number of extra gaps= 2 total=88934 # 2fa8A.173.2 read from T0547.t06.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)P176 because first residue in template chain is (2fa8A)T4 T0547 177 :KPNIG 2fa8A 5 :KPRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=88935 # 1muwA.173.169 read from T0547.t06.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)K175 (1muwA)G172 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 because of BadResidue code BAD_PEPTIDE in next template residue (1muwA)D174 Warning: unaligning (T0547)K177 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)D174 Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)I175 T0547 173 :RF 1muwA 170 :SQ T0547 179 :NIG 1muwA 176 :RFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=88937 # 1z7aA.173.154 read from T0547.t06.many.frag # found chain 1z7aA in training set Warning: unaligning (T0547)F174 (1z7aA)T156 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1z7aA)Q158 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :R 1z7aA 155 :L T0547 175 :K 1z7aA 157 :G T0547 177 :KPNIG 1z7aA 159 :RPVGW Number of specific fragments extracted= 3 number of extra gaps= 2 total=88940 # 1bouB.173.45 read from T0547.t06.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)K175 (1bouB)G48 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1bouB)N49 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1bouB)M50 because P (beta_P) conformation "forbidden" or filtered. T0547 173 :RF 1bouB 46 :QP T0547 178 :PNIG 1bouB 51 :PDVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=88942 # 1y7tA.173.28 read from T0547.t06.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)P178 (1y7tA)Q33 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1y7tA)I36 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFKPK 1y7tA 28 :MLGKD T0547 179 :NI 1y7tA 34 :PV Number of specific fragments extracted= 2 number of extra gaps= 2 total=88944 # 1ss9A.173.25 read from T0547.t06.many.frag # found chain 1ss9A in template set Warning: unaligning (T0547)P176 (1ss9A)T29 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFK 1ss9A 26 :HPD T0547 177 :KPNIG 1ss9A 30 :EIRFH Number of specific fragments extracted= 2 number of extra gaps= 1 total=88946 # 1nu0A.173.85 read from T0547.t06.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)K175 (1nu0A)G88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nu0A)V91 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RF 1nu0A 86 :RF T0547 176 :PK 1nu0A 89 :VE T0547 179 :NIG 1nu0A 92 :KLH Number of specific fragments extracted= 3 number of extra gaps= 2 total=88949 # 1jykA.173.20 read from T0547.t06.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)K175 because first residue in template chain is (1jykA)E3 T0547 176 :PKPNIG 1jykA 4 :IRVKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=88950 # 1kyqA.173.129 read from T0547.t06.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)F174 (1kyqA)F131 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K175 (1kyqA)G132 because S (epsilon) conformation "forbidden" or filtered. T0547 173 :R 1kyqA 130 :R T0547 176 :PKPNIG 1kyqA 133 :KQQLVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=88952 # 1n8kA.173.256 read from T0547.t06.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)K175 (1n8kA)N259 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1n8kA)G260 because T (delta_L) conformation "forbidden" or filtered. T0547 173 :RF 1n8kA 257 :MS T0547 177 :KPNIG 1n8kA 261 :GVDFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=88954 # 1m55A.173.69 read from T0547.t06.many.frag # found chain 1m55A in training set Warning: unaligning (T0547)K175 (1m55A)K72 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1m55A)Q73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1m55A)K76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I180 (1m55A)F77 because Y (epsilon') conformation "forbidden" or filtered. T0547 173 :RF 1m55A 70 :FS T0547 177 :KP 1m55A 74 :ES T0547 181 :G 1m55A 78 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=88957 # 2b4aA.173.83 read from T0547.t06.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)P176 (2b4aA)K75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE in next template residue (2b4aA)S78 Warning: unaligning (T0547)N179 because of BadResidue code BAD_PEPTIDE at template residue (2b4aA)S78 Warning: unaligning (T0547)G181 (2b4aA)L80 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFK 2b4aA 72 :EQT T0547 177 :K 2b4aA 76 :Q T0547 180 :I 2b4aA 79 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=88960 # 1jl1A.173.57 read from T0547.t06.many.frag # found chain 1jl1A in training set Warning: unaligning (T0547)P176 (1jl1A)E61 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1jl1A)H62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1jl1A)A63 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1jl1A)E64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1jl1A)I66 because D (zeta) conformation "forbidden" or filtered. T0547 173 :RFK 1jl1A 58 :ALK T0547 180 :I 1jl1A 65 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=88962 # 1q77A.173.29 read from T0547.t06.many.frag # found chain 1q77A in template set Warning: unaligning (T0547)K175 (1q77A)G29 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1q77A)D33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1q77A)L35 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RF 1q77A 27 :KL T0547 176 :PKP 1q77A 30 :AEL T0547 180 :I 1q77A 34 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=88965 # 1ybdA.173.94 read from T0547.t06.many.frag # found chain 1ybdA in template set Warning: unaligning (T0547)P176 (1ybdA)I100 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1ybdA)A102 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFK 1ybdA 97 :TLG T0547 177 :K 1ybdA 101 :K T0547 179 :NIG 1ybdA 103 :RVQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=88968 # 1nnfA.173.22 read from T0547.t06.many.frag # found chain 1nnfA in training set Warning: unaligning (T0547)P178 (1nnfA)V28 because E (beta_S) conformation "forbidden" or filtered. T0547 173 :RFKPK 1nnfA 23 :ETGIK T0547 179 :NIG 1nnfA 29 :TLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=88970 # 1pgjA.173.64 read from T0547.t06.many.frag # found chain 1pgjA in template set Warning: unaligning (T0547)K177 (1pgjA)P69 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1pgjA)L73 because P (beta_P) conformation "forbidden" or filtered. T0547 173 :RFKP 1pgjA 65 :SLKK T0547 178 :PNI 1pgjA 70 :RKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=88972 # 1oi0A.173.20 read from T0547.t06.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)K175 (1oi0A)P23 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1oi0A)L29 because P (beta_P) conformation "forbidden" or filtered. T0547 173 :RF 1oi0A 21 :AH T0547 176 :PKPNI 1oi0A 24 :DEFIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=88974 # 2aqjA.174.27 read from T0547.t06.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FK 2aqjA 28 :LQ T0547 177 :K 2aqjA 31 :Q T0547 179 :NIGL 2aqjA 33 :NITL Number of specific fragments extracted= 3 number of extra gaps= 2 total=88977 # 1e0tA.174.56 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)P178 (1e0tA)A61 because Y (epsilon') conformation "forbidden" or filtered. T0547 174 :FKPK 1e0tA 57 :TGKT T0547 179 :NIGL 1e0tA 62 :AILL Number of specific fragments extracted= 2 number of extra gaps= 1 total=88979 # 2fa8A.174.3 read from T0547.t06.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)P176 because first residue in template chain is (2fa8A)T4 Warning: unaligning (T0547)G181 (2fa8A)A9 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 2fa8A 5 :KPRI T0547 182 :L 2fa8A 10 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=88981 # 1jx6A.174.171 read from T0547.t06.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)K177 (1jx6A)H198 because L (left) conformation "forbidden" or filtered. T0547 174 :FKP 1jx6A 195 :FPK T0547 178 :PNIGL 1jx6A 199 :TYYSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=88983 # 1cvrA.174.65 read from T0547.t06.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)P176 (1cvrA)N68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1cvrA)T71 because G (3-10) conformation "forbidden" or filtered. T0547 174 :FK 1cvrA 66 :EG T0547 177 :KP 1cvrA 69 :DL T0547 180 :IGL 1cvrA 72 :YVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=88986 # 1y7tA.174.29 read from T0547.t06.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)K175 (1y7tA)G30 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1y7tA)Q33 because D (zeta) conformation "forbidden" or filtered. T0547 174 :F 1y7tA 29 :L T0547 176 :PK 1y7tA 31 :KD T0547 179 :NIGL 1y7tA 34 :PVIL Number of specific fragments extracted= 3 number of extra gaps= 2 total=88989 # 2a2cA.174.49 read from T0547.t06.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K175 (2a2cA)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (2a2cA)S32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2a2cA)I33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I180 (2a2cA)F36 because Y (epsilon') conformation "forbidden" or filtered. T0547 174 :F 2a2cA 30 :F T0547 178 :PN 2a2cA 34 :PK T0547 181 :GL 2a2cA 37 :YV Number of specific fragments extracted= 3 number of extra gaps= 2 total=88992 # 1jykA.174.21 read from T0547.t06.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)K175 because first residue in template chain is (1jykA)E3 Warning: unaligning (T0547)N179 (1jykA)K7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1jykA)I9 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PKP 1jykA 4 :IRV T0547 180 :I 1jykA 8 :A T0547 182 :L 1jykA 10 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=88995 # 1itxA.174.209 read from T0547.t06.many.frag # found chain 1itxA in training set Warning: unaligning (T0547)P176 (1itxA)K244 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1itxA)Y246 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1itxA)T249 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FK 1itxA 242 :DG T0547 177 :K 1itxA 245 :K T0547 179 :NI 1itxA 247 :LL T0547 182 :L 1itxA 250 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=88999 # 1o7jA.174.0 read from T0547.t06.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)P176 because first residue in template chain is (1o7jA)K3 Warning: unaligning (T0547)G181 (1o7jA)V8 because P (beta_P) conformation "forbidden" or filtered. T0547 177 :KPNI 1o7jA 4 :LPNI T0547 182 :L 1o7jA 9 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=89001 # 1xgkA.174.101 read from T0547.t06.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)P176 (1xgkA)T104 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1xgkA)I105 because P (beta_P) conformation "forbidden" or filtered. T0547 174 :FK 1xgkA 102 :AG T0547 178 :PNIGL 1xgkA 106 :QHYIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=89003 # 1tv8A.174.92 read from T0547.t06.many.frag # found chain 1tv8A in template set Warning: unaligning (T0547)P176 (1tv8A)G95 because T (delta_L) conformation "forbidden" or filtered. T0547 174 :FK 1tv8A 93 :ID T0547 177 :KPNIGL 1tv8A 96 :IEDIGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89005 # 1zx0A.174.124 read from T0547.t06.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)P176 (1zx0A)G127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1zx0A)F129 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1zx0A)I132 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FK 1zx0A 125 :PD T0547 177 :K 1zx0A 128 :H T0547 179 :NI 1zx0A 130 :DG T0547 182 :L 1zx0A 133 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=89009 # 1bouB.174.46 read from T0547.t06.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)P176 (1bouB)N49 because G (3-10) conformation "forbidden" or filtered. T0547 174 :FK 1bouB 47 :PG T0547 177 :KPNIGL 1bouB 50 :MPDVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=89011 # 1z90A.174.124 read from T0547.t06.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)K175 (1z90A)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1z90A)P130 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1z90A)V132 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :F 1z90A 125 :Y T0547 176 :PKP 1z90A 127 :CKV T0547 180 :I 1z90A 131 :L T0547 182 :L 1z90A 133 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=89015 # 1muwA.174.170 read from T0547.t06.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)K175 (1muwA)G172 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 because of BadResidue code BAD_PEPTIDE in next template residue (1muwA)D174 Warning: unaligning (T0547)K177 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)D174 Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)I175 T0547 174 :F 1muwA 171 :Q T0547 179 :NIGL 1muwA 176 :RFAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=89017 # 2bogX.174.146 read from T0547.t06.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)K175 (2bogX)S148 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :F 2bogX 147 :G T0547 176 :PKPNIGL 2bogX 149 :SQARIYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=89019 # 1ok7A.174.81 read from T0547.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0547)K177 (1ok7A)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 174 :FKP 1ok7A 82 :LPE T0547 178 :PNIGL 1ok7A 86 :AEIAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=89021 # 1tr9A.174.53 read from T0547.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)K175 (1tr9A)K54 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1tr9A)I57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1tr9A)G60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L182 (1tr9A)V61 because Y (epsilon') conformation "forbidden" or filtered. T0547 174 :F 1tr9A 53 :A T0547 176 :PK 1tr9A 55 :RP T0547 179 :NI 1tr9A 58 :LI Number of specific fragments extracted= 3 number of extra gaps= 3 total=89024 # 1odzA.174.161 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)K175 (1odzA)G200 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1odzA)P204 because P (beta_P) conformation "forbidden" or filtered. T0547 174 :F 1odzA 199 :Q T0547 176 :PKP 1odzA 201 :RLI T0547 180 :IGL 1odzA 205 :VIF Number of specific fragments extracted= 3 number of extra gaps= 2 total=89027 # 1chmA.174.113 read from T0547.t06.many.frag # found chain 1chmA in template set Warning: unaligning (T0547)P176 (1chmA)K117 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)R119 Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)R119 T0547 174 :FK 1chmA 115 :LP T0547 179 :NIGL 1chmA 120 :RIGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=89029 # 1n8kA.174.257 read from T0547.t06.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)K175 (1n8kA)N259 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1n8kA)G260 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1n8kA)G261 because S (epsilon) conformation "forbidden" or filtered. T0547 174 :F 1n8kA 258 :S T0547 178 :PNIGL 1n8kA 262 :VDFSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=89031 # 1yqeA.174.183 read from T0547.t06.many.frag # found chain 1yqeA in template set Warning: unaligning (T0547)K175 (1yqeA)K181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1yqeA)M182 because G (3-10) conformation "forbidden" or filtered. T0547 174 :F 1yqeA 180 :E T0547 177 :KPNIGL 1yqeA 183 :DWNVAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=89033 # 2cvbA.174.62 read from T0547.t06.many.frag # found chain 2cvbA in training set T0547 174 :FKPKPNIGL 2cvbA 63 :RGKVAFVGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=89034 # 1lc5A.174.142 read from T0547.t06.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)K177 (1lc5A)D146 because G (3-10) conformation "forbidden" or filtered. T0547 174 :FKP 1lc5A 143 :LTP T0547 178 :PNIGL 1lc5A 147 :LDCLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=89036 # 1xtpA.174.154 read from T0547.t06.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)P176 (1xtpA)N157 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1xtpA)Y159 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1xtpA)I162 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FK 1xtpA 155 :PP T0547 177 :K 1xtpA 158 :T T0547 179 :NI 1xtpA 160 :DL T0547 182 :L 1xtpA 163 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=89040 # 1r2qA.174.107 read from T0547.t06.many.frag # found chain 1r2qA in training set Warning: unaligning (T0547)K175 (1r2qA)S123 because P (beta_P) conformation "forbidden" or filtered. T0547 174 :F 1r2qA 122 :A T0547 176 :PKPNIGL 1r2qA 124 :PNIVIAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89042 # 1a4iA.174.31 read from T0547.t06.many.frag # found chain 1a4iA in training set Warning: unaligning (T0547)K175 (1a4iA)G33 because T (delta_L) conformation "forbidden" or filtered. T0547 174 :F 1a4iA 32 :P T0547 176 :PKPNIGL 1a4iA 34 :FTPRLAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=89044 # 1wduA.174.76 read from T0547.t06.many.frag # found chain 1wduA in template set Warning: unaligning (T0547)P176 (1wduA)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1wduA)V84 because E (beta_S) conformation "forbidden" or filtered. T0547 174 :FK 1wduA 80 :GD T0547 177 :K 1wduA 83 :T T0547 179 :NIGL 1wduA 85 :KAAI Number of specific fragments extracted= 3 number of extra gaps= 2 total=89047 # 1pgjA.174.65 read from T0547.t06.many.frag # found chain 1pgjA in template set Warning: unaligning (T0547)K177 (1pgjA)P69 because C (cis) conformation "forbidden" or filtered. T0547 174 :FKP 1pgjA 66 :LKK T0547 178 :PNIGL 1pgjA 70 :RKALI Number of specific fragments extracted= 2 number of extra gaps= 1 total=89049 # 2aqjA.175.28 read from T0547.t06.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2aqjA)Q31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (2aqjA)N33 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :K 2aqjA 29 :Q T0547 180 :IGLR 2aqjA 34 :ITLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=89051 # 2fa8A.175.4 read from T0547.t06.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)P176 because first residue in template chain is (2fa8A)T4 T0547 177 :KPNIGLR 2fa8A 5 :KPRIAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=89052 # 1bouB.175.47 read from T0547.t06.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)P176 (1bouB)N49 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1bouB)V54 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :K 1bouB 48 :G T0547 177 :KPNI 1bouB 50 :MPDV T0547 182 :LR 1bouB 55 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=89055 # 1e0tA.175.57 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)K175 (1e0tA)G58 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1e0tA)A61 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1e0tA)L64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)T67 T0547 176 :PK 1e0tA 59 :KT T0547 179 :NI 1e0tA 62 :AI T0547 182 :L 1e0tA 65 :L Number of specific fragments extracted= 3 number of extra gaps= 4 total=89058 # 1o7jA.175.1 read from T0547.t06.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)P176 because first residue in template chain is (1o7jA)K3 Warning: unaligning (T0547)G181 (1o7jA)V8 because P (beta_P) conformation "forbidden" or filtered. T0547 177 :KPNI 1o7jA 4 :LPNI T0547 182 :LR 1o7jA 9 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89060 # 1y7tA.175.30 read from T0547.t06.many.frag # found chain 1y7tA in training set Warning: unaligning (T0547)K175 (1y7tA)G30 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1y7tA)Q33 because D (zeta) conformation "forbidden" or filtered. T0547 176 :PK 1y7tA 31 :KD T0547 179 :NIGLR 1y7tA 34 :PVILQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=89062 # 1tv8A.175.93 read from T0547.t06.many.frag # found chain 1tv8A in template set Warning: unaligning (T0547)K175 (1tv8A)D94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (1tv8A)G95 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1tv8A)D98 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KP 1tv8A 96 :IE T0547 180 :IGLR 1tv8A 99 :IGLT Number of specific fragments extracted= 2 number of extra gaps= 2 total=89064 # 1eexB.175.57 read from T0547.t06.many.frag # found chain 1eexB in training set Warning: unaligning (T0547)P176 (1eexB)Q59 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1eexB)D61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1eexB)I64 because P (beta_P) conformation "forbidden" or filtered. T0547 175 :K 1eexB 58 :T T0547 177 :K 1eexB 60 :Q T0547 179 :NI 1eexB 62 :EV T0547 182 :LR 1eexB 65 :IA Number of specific fragments extracted= 4 number of extra gaps= 3 total=89068 # 1qvzA.175.0 read from T0547.t06.many.frag # found chain 1qvzA in template set Warning: unaligning (T0547)P176 because first residue in template chain is (1qvzA)A2 Warning: unaligning (T0547)G181 (1qvzA)L7 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1qvzA 3 :PKKV T0547 182 :LR 1qvzA 8 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=89070 # 1xgkA.175.102 read from T0547.t06.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)P176 (1xgkA)T104 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1xgkA)I109 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :K 1xgkA 103 :G T0547 177 :KPNI 1xgkA 105 :IQHY T0547 182 :LR 1xgkA 110 :YS Number of specific fragments extracted= 3 number of extra gaps= 2 total=89073 # 2aebA.175.221 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P176 (2aebA)K223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2aebA)K224 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. T0547 175 :K 2aebA 222 :R T0547 179 :NIGLR 2aebA 226 :PIHLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=89075 # 1lc5A.175.143 read from T0547.t06.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)K177 (1lc5A)D146 because G (3-10) conformation "forbidden" or filtered. T0547 175 :KP 1lc5A 144 :TP T0547 178 :PNIGLR 1lc5A 147 :LDCLFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89077 # 1jykA.175.22 read from T0547.t06.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)K175 because first residue in template chain is (1jykA)E3 Warning: unaligning (T0547)N179 (1jykA)K7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1jykA)I9 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PKP 1jykA 4 :IRV T0547 180 :I 1jykA 8 :A T0547 182 :LR 1jykA 10 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=89080 # 2a2cA.175.50 read from T0547.t06.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)K175 (2a2cA)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 (2a2cA)S32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (2a2cA)I33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I180 (2a2cA)F36 because Y (epsilon') conformation "forbidden" or filtered. T0547 178 :PN 2a2cA 34 :PK T0547 181 :GLR 2a2cA 37 :YVR Number of specific fragments extracted= 2 number of extra gaps= 2 total=89082 # 1mvlA.175.16 read from T0547.t06.many.frag # found chain 1mvlA in template set Warning: unaligning (T0547)K177 because first residue in template chain is (1mvlA)K19 T0547 178 :PNIGLR 1mvlA 20 :PRVLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=89083 # 1rlr.175.248 read from T0547.t06.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)P178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rlr)G253 Warning: unaligning (T0547)N179 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rlr)G253 Warning: unaligning (T0547)I180 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1rlr)I254 T0547 175 :KPK 1rlr 249 :SQR T0547 181 :GLR 1rlr 255 :GIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=89085 # 1h72C.175.162 read from T0547.t06.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)P176 (1h72C)F168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1h72C)L170 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1h72C)L173 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :K 1h72C 167 :D T0547 177 :K 1h72C 169 :K T0547 179 :NI 1h72C 171 :DI T0547 182 :LR 1h72C 174 :IA Number of specific fragments extracted= 4 number of extra gaps= 3 total=89089 # 1vliA.175.183 read from T0547.t06.many.frag # found chain 1vliA in template set Warning: unaligning (T0547)K175 (1vliA)G172 because T (delta_L) conformation "forbidden" or filtered. T0547 176 :PKPNIGLR 1vliA 173 :NNQIAIMH Number of specific fragments extracted= 1 number of extra gaps= 1 total=89090 # 1z90A.175.125 read from T0547.t06.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)R183 (1z90A)M134 because P (beta_P) conformation "forbidden" or filtered. T0547 175 :KPKPNIGL 1z90A 126 :GCKVPLVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=89091 # 1omhA.175.76 read from T0547.t06.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)P176 (1omhA)S78 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :K 1omhA 77 :D T0547 177 :KPNIGLR 1omhA 79 :KERIGLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=89093 # 1odzA.175.162 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)N179 (1odzA)P204 because P (beta_P) conformation "forbidden" or filtered. T0547 175 :KPKP 1odzA 200 :GRLI T0547 180 :IGLR 1odzA 205 :VIFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=89095 # 1nytA.175.177 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)K175 (1nytA)G178 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1nytA)F181 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PK 1nytA 179 :HE T0547 179 :NIGLR 1nytA 182 :DLIIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=89097 # 1muwA.175.171 read from T0547.t06.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)K175 (1muwA)G172 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P176 because of BadResidue code BAD_PEPTIDE in next template residue (1muwA)D174 Warning: unaligning (T0547)K177 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)D174 Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)I175 T0547 179 :NIGLR 1muwA 176 :RFAIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=89098 # 1cvrA.175.66 read from T0547.t06.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)P176 (1cvrA)N68 because L (left) conformation "forbidden" or filtered. T0547 175 :K 1cvrA 67 :G T0547 177 :KPNIGLR 1cvrA 69 :DLTYVLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89100 # 1n8kA.175.258 read from T0547.t06.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)P176 (1n8kA)G260 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1n8kA)G261 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1n8kA)S265 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :K 1n8kA 259 :N T0547 178 :PNI 1n8kA 262 :VDF T0547 182 :LR 1n8kA 266 :FE Number of specific fragments extracted= 3 number of extra gaps= 2 total=89103 # 1pgjA.175.66 read from T0547.t06.many.frag # found chain 1pgjA in template set Warning: unaligning (T0547)K177 (1pgjA)P69 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1pgjA)L73 because P (beta_P) conformation "forbidden" or filtered. T0547 175 :KP 1pgjA 67 :KK T0547 178 :PNI 1pgjA 70 :RKA T0547 182 :LR 1pgjA 74 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=89106 # 1zsqA.175.241 read from T0547.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0547)P178 (1zsqA)H314 because G (3-10) conformation "forbidden" or filtered. T0547 175 :KPK 1zsqA 311 :AQS T0547 179 :NIGLR 1zsqA 315 :KIFIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=89108 # 1yqeA.175.184 read from T0547.t06.many.frag # found chain 1yqeA in template set Warning: unaligning (T0547)P176 (1yqeA)M182 because G (3-10) conformation "forbidden" or filtered. T0547 175 :K 1yqeA 181 :K T0547 177 :KPNIGLR 1yqeA 183 :DWNVAVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=89110 # 1fuiA.175.100 read from T0547.t06.many.frag # found chain 1fuiA in template set T0547 175 :KPKPNIGLR 1fuiA 101 :PTRPKAIWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=89111 # 1zx0A.175.125 read from T0547.t06.many.frag # found chain 1zx0A in template set Warning: unaligning (T0547)P176 (1zx0A)G127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1zx0A)F129 because E (beta_S) conformation "forbidden" or filtered. T0547 175 :K 1zx0A 126 :D T0547 177 :K 1zx0A 128 :H T0547 179 :NIGLR 1zx0A 130 :DGILY Number of specific fragments extracted= 3 number of extra gaps= 2 total=89114 # 1bouB.176.48 read from T0547.t06.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)P176 (1bouB)N49 because G (3-10) conformation "forbidden" or filtered. T0547 177 :KPNIGLRV 1bouB 50 :MPDVVILV Number of specific fragments extracted= 1 number of extra gaps= 1 total=89115 # 1e0tA.176.58 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)K177 (1e0tA)T60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1e0tA)A61 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1e0tA)L64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)T67 Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)T67 T0547 176 :P 1e0tA 59 :K T0547 179 :NI 1e0tA 62 :AI T0547 182 :L 1e0tA 65 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=89118 # 2fa8A.176.5 read from T0547.t06.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)P176 because first residue in template chain is (2fa8A)T4 T0547 177 :KPNIGLRV 2fa8A 5 :KPRIAIRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=89119 # 1odzA.176.163 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)G181 (1odzA)I206 because N (gamma') conformation "forbidden" or filtered. T0547 176 :PKPNI 1odzA 201 :RLIPV T0547 182 :LRV 1odzA 207 :FRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89121 # 2aqjA.176.29 read from T0547.t06.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)P176 (2aqjA)Q30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (2aqjA)N33 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :K 2aqjA 31 :Q T0547 180 :IGLRV 2aqjA 34 :ITLIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=89123 # 1knwA.176.134 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N179 (1knwA)R138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1knwA)W140 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PKP 1knwA 135 :PGH T0547 180 :I 1knwA 139 :V T0547 182 :LRV 1knwA 141 :LRV Number of specific fragments extracted= 3 number of extra gaps= 2 total=89126 # 1mvlA.176.17 read from T0547.t06.many.frag # found chain 1mvlA in template set Warning: unaligning (T0547)K177 because first residue in template chain is (1mvlA)K19 Warning: unaligning (T0547)G181 (1mvlA)L23 because P (beta_P) conformation "forbidden" or filtered. T0547 178 :PNI 1mvlA 20 :PRV T0547 182 :LRV 1mvlA 24 :LAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=89128 # 1eexB.176.58 read from T0547.t06.many.frag # found chain 1eexB in training set Warning: unaligning (T0547)P176 (1eexB)Q59 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1eexB)Q60 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1eexB)D61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1eexB)I64 because P (beta_P) conformation "forbidden" or filtered. T0547 179 :NI 1eexB 62 :EV T0547 182 :LRV 1eexB 65 :IAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=89130 # 1nytA.176.178 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)P178 (1nytA)F181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V184 (1nytA)A187 because G (3-10) conformation "forbidden" or filtered. T0547 176 :PK 1nytA 179 :HE T0547 179 :NIGLR 1nytA 182 :DLIIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=89132 # 1lc5A.176.144 read from T0547.t06.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)G181 (1lc5A)L150 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PKPNI 1lc5A 145 :PDLDC T0547 182 :LRV 1lc5A 151 :FLC Number of specific fragments extracted= 2 number of extra gaps= 1 total=89134 # 1o7jA.176.2 read from T0547.t06.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)P176 because first residue in template chain is (1o7jA)K3 Warning: unaligning (T0547)K177 (1o7jA)L4 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1o7jA)V8 because P (beta_P) conformation "forbidden" or filtered. T0547 178 :PNI 1o7jA 5 :PNI T0547 182 :LRV 1o7jA 9 :ILA Number of specific fragments extracted= 2 number of extra gaps= 1 total=89136 # 1z90A.176.126 read from T0547.t06.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)G181 (1z90A)V132 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PKPNI 1z90A 127 :CKVPL T0547 182 :LRV 1z90A 133 :LMN Number of specific fragments extracted= 2 number of extra gaps= 1 total=89138 # 1h72C.176.163 read from T0547.t06.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)P176 (1h72C)F168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K177 (1h72C)K169 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1h72C)L170 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1h72C)D171 because P (beta_P) conformation "forbidden" or filtered. T0547 180 :IGLRV 1h72C 172 :ILIAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=89139 # 1vliA.176.184 read from T0547.t06.many.frag # found chain 1vliA in template set T0547 176 :PKPNIGLRV 1vliA 173 :NNQIAIMHC Number of specific fragments extracted= 1 number of extra gaps= 0 total=89140 # 1qvzA.176.1 read from T0547.t06.many.frag # found chain 1qvzA in template set Warning: unaligning (T0547)P176 because first residue in template chain is (1qvzA)A2 Warning: unaligning (T0547)G181 (1qvzA)L7 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1qvzA 3 :PKKV T0547 182 :LRV 1qvzA 8 :LAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89142 # 2a2cA.176.51 read from T0547.t06.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)P176 (2a2cA)S32 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNIGLRV 2a2cA 33 :IPKFYVRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=89143 # 1n8kA.176.259 read from T0547.t06.many.frag # found chain 1n8kA in training set Warning: unaligning (T0547)P176 (1n8kA)G260 because T (delta_L) conformation "forbidden" or filtered. T0547 177 :KPNIGLRV 1n8kA 261 :GVDFSFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=89144 # 1jykA.176.23 read from T0547.t06.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)N179 (1jykA)K7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1jykA)I9 because E (beta_S) conformation "forbidden" or filtered. T0547 176 :PKP 1jykA 4 :IRV T0547 180 :I 1jykA 8 :A T0547 182 :LRV 1jykA 10 :ILA Number of specific fragments extracted= 3 number of extra gaps= 2 total=89147 # 1xgkA.176.103 read from T0547.t06.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)P176 (1xgkA)T104 because G (3-10) conformation "forbidden" or filtered. T0547 177 :KPNIGLRV 1xgkA 105 :IQHYIYSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=89148 # 1r2qA.176.109 read from T0547.t06.many.frag # found chain 1r2qA in training set T0547 176 :PKPNIGLRV 1r2qA 124 :PNIVIALSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=89149 # 1cs1A.176.135 read from T0547.t06.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)P176 (1cs1A)E136 because G (3-10) conformation "forbidden" or filtered. T0547 177 :KPNIGLRV 1cs1A 137 :KPKLVLVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=89150 # 1tv8A.176.94 read from T0547.t06.many.frag # found chain 1tv8A in template set Warning: unaligning (T0547)P176 (1tv8A)G95 because T (delta_L) conformation "forbidden" or filtered. T0547 177 :KPNIGLRV 1tv8A 96 :IEDIGLTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=89151 # 2bogX.176.148 read from T0547.t06.many.frag # found chain 2bogX in training set Warning: unaligning (T0547)N179 (2bogX)R152 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (2bogX)Y154 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V184 (2bogX)A157 because G (3-10) conformation "forbidden" or filtered. T0547 176 :PKP 2bogX 149 :SQA T0547 180 :I 2bogX 153 :I T0547 182 :LR 2bogX 155 :FD Number of specific fragments extracted= 3 number of extra gaps= 3 total=89154 # 1wuaA.176.146 read from T0547.t06.many.frag # found chain 1wuaA in template set Warning: unaligning (T0547)P176 (1wuaA)R147 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1wuaA)T149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1wuaA)G150 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1wuaA)V152 because P (beta_P) conformation "forbidden" or filtered. T0547 177 :K 1wuaA 148 :T T0547 180 :I 1wuaA 151 :I T0547 182 :LRV 1wuaA 153 :LDS Number of specific fragments extracted= 3 number of extra gaps= 3 total=89157 # 1fuiA.176.101 read from T0547.t06.many.frag # found chain 1fuiA in template set T0547 176 :PKPNIGLRV 1fuiA 102 :TRPKAIWGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=89158 # 1yqeA.176.185 read from T0547.t06.many.frag # found chain 1yqeA in template set Warning: unaligning (T0547)P176 (1yqeA)M182 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1yqeA)N185 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1yqeA)A187 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KP 1yqeA 183 :DW T0547 180 :I 1yqeA 186 :V T0547 182 :LRV 1yqeA 188 :VGV Number of specific fragments extracted= 3 number of extra gaps= 3 total=89161 # 1muwA.176.172 read from T0547.t06.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)P176 because of BadResidue code BAD_PEPTIDE in next template residue (1muwA)D174 Warning: unaligning (T0547)K177 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)D174 Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)I175 T0547 179 :NIGLRV 1muwA 176 :RFAIEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=89162 # 2aebA.176.222 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P176 (2aebA)K223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :K 2aebA 224 :K T0547 179 :NIGLRV 2aebA 226 :PIHLSF Number of specific fragments extracted= 2 number of extra gaps= 2 total=89164 # 1zpdA.176.157 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)P176 (1zpdA)E158 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1zpdA)K160 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1zpdA)P161 because P (beta_P) conformation "forbidden" or filtered. T0547 177 :K 1zpdA 159 :K T0547 180 :IGLRV 1zpdA 162 :VYLEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=89166 # 1lzlA.176.247 read from T0547.t06.many.frag # found chain 1lzlA in training set Warning: unaligning (T0547)P176 (1lzlA)G248 because T (delta_L) conformation "forbidden" or filtered. T0547 177 :KPNIGLRV 1lzlA 249 :LPPTYLST Number of specific fragments extracted= 1 number of extra gaps= 1 total=89167 # 1knwA.177.135 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G181 (1knwA)W140 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1knwA 136 :GHRV T0547 182 :LRVR 1knwA 141 :LRVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=89169 # 1odzA.177.164 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)G181 (1odzA)I206 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1odzA)Y210 because L (left) conformation "forbidden" or filtered. T0547 177 :KPNI 1odzA 202 :LIPV T0547 182 :LRV 1odzA 207 :FRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=89171 # 7odcA.177.147 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)R183 (7odcA)R154 because P (beta_P) conformation "forbidden" or filtered. T0547 177 :KPNIGL 7odcA 148 :KAKLVL T0547 184 :VR 7odcA 155 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=89173 # 2fa8A.177.6 read from T0547.t06.many.frag # found chain 2fa8A in template set T0547 177 :KPNIGLRVR 2fa8A 5 :KPRIAIRYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=89174 # 1e0tA.177.59 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)P178 (1e0tA)A61 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)T67 Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)T67 T0547 177 :K 1e0tA 60 :T T0547 179 :NIGL 1e0tA 62 :AILL T0547 185 :R 1e0tA 68 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=89177 # 1bouB.177.49 read from T0547.t06.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)K177 (1bouB)M50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1bouB)V54 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1bouB)Y58 because Y (epsilon') conformation "forbidden" or filtered. T0547 178 :PNI 1bouB 51 :PDV T0547 182 :LRV 1bouB 55 :ILV Number of specific fragments extracted= 2 number of extra gaps= 3 total=89179 # 1zpdA.177.158 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)P178 (1zpdA)K160 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1zpdA)P161 because P (beta_P) conformation "forbidden" or filtered. T0547 177 :K 1zpdA 159 :K T0547 180 :IGLRVR 1zpdA 162 :VYLEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=89181 # 1lc5A.177.145 read from T0547.t06.many.frag # found chain 1lc5A in training set T0547 177 :KPNIGLRVR 1lc5A 146 :DLDCLFLCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=89182 # 1z90A.177.127 read from T0547.t06.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)R183 (1z90A)M134 because P (beta_P) conformation "forbidden" or filtered. T0547 177 :KPNIGL 1z90A 128 :KVPLVL T0547 184 :VR 1z90A 135 :NS Number of specific fragments extracted= 2 number of extra gaps= 1 total=89184 # 1r2qA.177.110 read from T0547.t06.many.frag # found chain 1r2qA in training set T0547 177 :KPNIGLRVR 1r2qA 125 :NIVIALSGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=89185 # 2b8nA.177.190 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)K177 (2b8nA)P179 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (2b8nA)L187 because D (zeta) conformation "forbidden" or filtered. T0547 178 :PNIGLRV 2b8nA 180 :AKVVALV Number of specific fragments extracted= 1 number of extra gaps= 2 total=89186 # 1zp4A.177.143 read from T0547.t06.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)G181 (1zp4A)S148 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1zp4A 144 :DFDI T0547 182 :LRVR 1zp4A 149 :VAAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=89188 # 1yqeA.177.186 read from T0547.t06.many.frag # found chain 1yqeA in template set T0547 177 :KPNIGLRVR 1yqeA 183 :DWNVAVGVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=89189 # 1h2wA.177.628 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)N179 (1h2wA)P631 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1h2wA)T637 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :KP 1h2wA 629 :QY T0547 180 :IGLRV 1h2wA 632 :SMLLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=89191 # 1vliA.177.185 read from T0547.t06.many.frag # found chain 1vliA in template set T0547 177 :KPNIGLRVR 1vliA 174 :NQIAIMHCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=89192 # 1m5wA.177.126 read from T0547.t06.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)G181 (1m5wA)S131 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1m5wA 127 :GIQV T0547 182 :LRVR 1m5wA 132 :LFID Number of specific fragments extracted= 2 number of extra gaps= 1 total=89194 # 1cs1A.177.136 read from T0547.t06.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)G181 (1cs1A)V141 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :KPNI 1cs1A 137 :KPKL T0547 182 :LRVR 1cs1A 142 :LVES Number of specific fragments extracted= 2 number of extra gaps= 1 total=89196 # 1eexB.177.59 read from T0547.t06.many.frag # found chain 1eexB in training set Warning: unaligning (T0547)P178 (1eexB)D61 because G (3-10) conformation "forbidden" or filtered. T0547 177 :K 1eexB 60 :Q T0547 179 :NIGLRVR 1eexB 62 :EVIIAVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=89198 # 1w8sA.177.137 read from T0547.t06.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)K177 (1w8sA)D138 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1w8sA)L139 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVR 1w8sA 140 :PLVVESF Number of specific fragments extracted= 1 number of extra gaps= 1 total=89199 # 2axoA.177.40 read from T0547.t06.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)I180 (2axoA)G44 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :KPN 2axoA 41 :AVK T0547 181 :GLRVR 2axoA 45 :VVELF Number of specific fragments extracted= 2 number of extra gaps= 1 total=89201 # 1vhvA.177.86 read from T0547.t06.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)P178 (1vhvA)K75 because E (beta_S) conformation "forbidden" or filtered. T0547 177 :K 1vhvA 74 :S T0547 179 :NIGLRVR 1vhvA 76 :SVVLLVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=89203 # 2aqjA.177.30 read from T0547.t06.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)K177 (2aqjA)Q31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (2aqjA)A32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (2aqjA)T35 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NI 2aqjA 33 :NI T0547 182 :LRVR 2aqjA 36 :LIES Number of specific fragments extracted= 2 number of extra gaps= 2 total=89205 # 1nytA.177.179 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)P178 (1nytA)F181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V184 (1nytA)A187 because G (3-10) conformation "forbidden" or filtered. T0547 177 :K 1nytA 180 :E T0547 179 :NIGLR 1nytA 182 :DLIIN T0547 185 :R 1nytA 188 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=89208 # 1ccwA.177.53 read from T0547.t06.many.frag # found chain 1ccwA in training set Warning: unaligning (T0547)K177 (1ccwA)K54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE in next template residue (1ccwA)D56 Warning: unaligning (T0547)N179 because of BadResidue code BAD_PEPTIDE at template residue (1ccwA)D56 T0547 180 :IGLRVR 1ccwA 57 :AILVSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=89209 # 1v72A.177.139 read from T0547.t06.many.frag # found chain 1v72A in template set Warning: unaligning (T0547)K177 (1v72A)T140 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P178 (1v72A)Q141 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1v72A)C144 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NI 1v72A 142 :PA T0547 182 :LRVR 1v72A 145 :VSIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=89211 # 2aebA.177.223 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :K 2aebA 224 :K T0547 179 :NIGLRVR 2aebA 226 :PIHLSFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=89213 # 1cvrA.177.68 read from T0547.t06.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)N179 (1cvrA)T71 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1cvrA)V73 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1cvrA)G77 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :KP 1cvrA 69 :DL T0547 180 :I 1cvrA 72 :Y T0547 182 :LRV 1cvrA 74 :LLV Number of specific fragments extracted= 3 number of extra gaps= 3 total=89216 # 1vbkA.177.148 read from T0547.t06.many.frag # found chain 1vbkA in template set Warning: unaligning (T0547)P178 (1vbkA)I150 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1vbkA)G153 because P (beta_P) conformation "forbidden" or filtered. T0547 177 :K 1vbkA 149 :D T0547 179 :NI 1vbkA 151 :EI T0547 182 :LRVR 1vbkA 154 :IEIM Number of specific fragments extracted= 3 number of extra gaps= 2 total=89219 # 1xovA.177.82 read from T0547.t06.many.frag # found chain 1xovA in template set Warning: unaligning (T0547)P178 (1xovA)A72 because Y (epsilon') conformation "forbidden" or filtered. T0547 177 :K 1xovA 71 :P T0547 179 :NIGLRVR 1xovA 73 :DVHISVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=89221 # 1rttA.177.71 read from T0547.t06.many.frag # found chain 1rttA in training set T0547 177 :KPNIGLRVR 1rttA 72 :AADALLFAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=89222 # 1knwA.178.136 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 178 :PNIGLRVRL 1knwA 137 :HRVWLRVNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=89223 # 7odcA.178.148 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 T0547 178 :PNIGLRVR 7odcA 149 :AKLVLRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=89224 # 2fa8A.178.7 read from T0547.t06.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)R183 (2fa8A)R11 because P (beta_P) conformation "forbidden" or filtered. T0547 178 :PNIGL 2fa8A 6 :PRIAI T0547 184 :VRL 2fa8A 12 :YCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=89226 # 1odzA.178.165 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)N179 (1odzA)P204 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1odzA)I206 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1odzA)Y210 because L (left) conformation "forbidden" or filtered. T0547 178 :P 1odzA 203 :I T0547 180 :I 1odzA 205 :V T0547 182 :LRV 1odzA 207 :FRL T0547 186 :L 1odzA 211 :H Number of specific fragments extracted= 4 number of extra gaps= 3 total=89230 # 1rttA.178.72 read from T0547.t06.many.frag # found chain 1rttA in training set T0547 178 :PNIGLRVRL 1rttA 73 :ADALLFATP Number of specific fragments extracted= 1 number of extra gaps= 0 total=89231 # 1e0tA.178.60 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)P178 (1e0tA)A61 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1e0tA)A62 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1e0tA)L64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)T67 Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)T67 Warning: unaligning (T0547)L186 (1e0tA)G69 because S (epsilon) conformation "forbidden" or filtered. T0547 180 :I 1e0tA 63 :I T0547 182 :L 1e0tA 65 :L T0547 185 :R 1e0tA 68 :K Number of specific fragments extracted= 3 number of extra gaps= 4 total=89234 # 1zpdA.178.159 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)P178 (1zpdA)K160 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N179 (1zpdA)P161 because P (beta_P) conformation "forbidden" or filtered. T0547 180 :IGLRVRL 1zpdA 162 :VYLEIAC Number of specific fragments extracted= 1 number of extra gaps= 1 total=89235 # 1m4lA.178.102 read from T0547.t06.many.frag # found chain 1m4lA in training set Warning: unaligning (T0547)P178 (1m4lA)M103 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1m4lA 104 :DIFLEIVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=89236 # 1zp4A.178.144 read from T0547.t06.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)G181 (1zp4A)S148 because E (beta_S) conformation "forbidden" or filtered. T0547 178 :PNI 1zp4A 145 :FDI T0547 182 :LRVRL 1zp4A 149 :VAAYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=89238 # 1vhvA.178.87 read from T0547.t06.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)P178 (1vhvA)K75 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1vhvA 76 :SVVLLVPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=89239 # 2b8nA.178.191 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)G181 (2b8nA)V183 because D (zeta) conformation "forbidden" or filtered. T0547 178 :PNI 2b8nA 180 :AKV T0547 182 :LRVRL 2b8nA 184 :ALVLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=89241 # 1w8sA.178.138 read from T0547.t06.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)P178 (1w8sA)L139 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1w8sA 140 :PLVVESFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=89242 # 1vliA.178.186 read from T0547.t06.many.frag # found chain 1vliA in template set T0547 178 :PNIGLRVRL 1vliA 175 :QIAIMHCVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=89243 # 1lc5A.178.146 read from T0547.t06.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)L186 (1lc5A)P155 because C (cis) conformation "forbidden" or filtered. T0547 178 :PNIGLRVR 1lc5A 147 :LDCLFLCT Number of specific fragments extracted= 1 number of extra gaps= 1 total=89244 # 1z90A.178.128 read from T0547.t06.many.frag # found chain 1z90A in template set T0547 178 :PNIGLRVRL 1z90A 129 :VPLVLMNSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=89245 # 1r2qA.178.111 read from T0547.t06.many.frag # found chain 1r2qA in training set Warning: unaligning (T0547)L186 (1r2qA)K134 because L (left) conformation "forbidden" or filtered. T0547 178 :PNIGLRVR 1r2qA 126 :IVIALSGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=89246 # 1bouB.178.50 read from T0547.t06.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)R185 (1bouB)Y58 because Y (epsilon') conformation "forbidden" or filtered. T0547 178 :PNIGLRV 1bouB 51 :PDVVILV T0547 186 :L 1bouB 59 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=89248 # 1cs1A.178.137 read from T0547.t06.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)L186 (1cs1A)P146 because C (cis) conformation "forbidden" or filtered. T0547 178 :PNIGLRVR 1cs1A 138 :PKLVLVES Number of specific fragments extracted= 1 number of extra gaps= 1 total=89249 # 1m5wA.178.127 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 178 :PNIGLRVRL 1m5wA 128 :IQVSLFIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=89250 # 1hqsA.178.138 read from T0547.t06.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)P178 (1hqsA)D139 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1hqsA)I142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1hqsA)N146 because G (3-10) conformation "forbidden" or filtered. T0547 179 :NI 1hqsA 140 :MV T0547 182 :LRV 1hqsA 143 :FRE T0547 186 :L 1hqsA 147 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=89253 # 1v72A.178.140 read from T0547.t06.many.frag # found chain 1v72A in template set Warning: unaligning (T0547)P178 (1v72A)Q141 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1v72A)A150 T0547 179 :NIGLRVR 1v72A 142 :PACVSIT Number of specific fragments extracted= 1 number of extra gaps= 2 total=89254 # 1gqiA.178.232 read from T0547.t06.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)P178 (1gqiA)I237 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1gqiA 238 :KMYLSINF Number of specific fragments extracted= 1 number of extra gaps= 1 total=89255 # 1nytA.178.180 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)P178 (1nytA)F181 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1nytA 182 :DLIINATS Number of specific fragments extracted= 1 number of extra gaps= 1 total=89256 # 1vbkA.178.149 read from T0547.t06.many.frag # found chain 1vbkA in template set Warning: unaligning (T0547)P178 (1vbkA)I150 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 (1vbkA)Q158 because L (left) conformation "forbidden" or filtered. T0547 179 :NIGLRVR 1vbkA 151 :EIGIEIM Number of specific fragments extracted= 1 number of extra gaps= 2 total=89257 # 1xovA.178.83 read from T0547.t06.many.frag # found chain 1xovA in template set Warning: unaligning (T0547)P178 (1xovA)A72 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1xovA 73 :DVHISVHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=89258 # 2aebA.178.224 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)P178 (2aebA)R225 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 2aebA 226 :PIHLSFDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=89259 # 1yqeA.178.187 read from T0547.t06.many.frag # found chain 1yqeA in template set T0547 178 :PNIGLRVRL 1yqeA 184 :WNVAVGVGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=89260 # 1qs1A.178.200 read from T0547.t06.many.frag # found chain 1qs1A in training set T0547 178 :PNIGLRVRL 1qs1A 201 :ERVILKVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=89261 # 1h2wA.178.629 read from T0547.t06.many.frag # found chain 1h2wA in training set T0547 178 :PNIGLRVRL 1h2wA 630 :YPSMLLLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=89262 # 1muwA.178.174 read from T0547.t06.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)P178 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)I175 T0547 179 :NIGLRVRL 1muwA 176 :RFAIEPKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=89263 # 1knwA.179.137 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N179 (1knwA)R138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G181 (1knwA)W140 because E (beta_S) conformation "forbidden" or filtered. T0547 180 :I 1knwA 139 :V T0547 182 :LRVRLH 1knwA 141 :LRVNPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=89265 # 7odcA.179.149 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 T0547 179 :NIGLRVR 7odcA 150 :KLVLRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=89266 # 2fa8A.179.8 read from T0547.t06.many.frag # found chain 2fa8A in template set T0547 179 :NIGLRVRLH 2fa8A 7 :RIAIRYCTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=89267 # 1odzA.179.166 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)G181 (1odzA)I206 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1odzA)Y210 because L (left) conformation "forbidden" or filtered. T0547 179 :NI 1odzA 204 :PV T0547 182 :LRV 1odzA 207 :FRL T0547 186 :LH 1odzA 211 :HE Number of specific fragments extracted= 3 number of extra gaps= 2 total=89270 # 1rttA.179.73 read from T0547.t06.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)I180 (1rttA)A75 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :N 1rttA 74 :D T0547 181 :GLRVRLH 1rttA 76 :LLFATPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=89272 # 1zpdA.179.160 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)G181 (1zpdA)Y163 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NI 1zpdA 161 :PV T0547 182 :LRVRLH 1zpdA 164 :LEIACN Number of specific fragments extracted= 2 number of extra gaps= 1 total=89274 # 1zp4A.179.145 read from T0547.t06.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)G181 (1zp4A)S148 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1zp4A)E154 because G (3-10) conformation "forbidden" or filtered. T0547 179 :NI 1zp4A 146 :DI T0547 182 :LRVRL 1zp4A 149 :VAAYP Number of specific fragments extracted= 2 number of extra gaps= 2 total=89276 # 1e0tA.179.61 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)R183 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)T67 Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)T67 Warning: unaligning (T0547)L186 (1e0tA)G69 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1e0tA)P70 because P (beta_P) conformation "forbidden" or filtered. T0547 179 :NIGL 1e0tA 62 :AILL T0547 185 :R 1e0tA 68 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=89278 # 1w8sA.179.139 read from T0547.t06.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)G181 (1w8sA)V142 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1w8sA)R148 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NI 1w8sA 140 :PL T0547 182 :LRVRL 1w8sA 143 :VESFP Number of specific fragments extracted= 2 number of extra gaps= 2 total=89280 # 1vhvA.179.88 read from T0547.t06.many.frag # found chain 1vhvA in template set T0547 179 :NIGLRVRLH 1vhvA 76 :SVVLLVPGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=89281 # 1eexB.179.61 read from T0547.t06.many.frag # found chain 1eexB in training set Warning: unaligning (T0547)G181 (1eexB)I64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1eexB)A70 because G (3-10) conformation "forbidden" or filtered. T0547 179 :NI 1eexB 62 :EV T0547 182 :LRVRL 1eexB 65 :IAVGP Number of specific fragments extracted= 2 number of extra gaps= 2 total=89283 # 1m4lA.179.103 read from T0547.t06.many.frag # found chain 1m4lA in training set T0547 179 :NIGLRVRLH 1m4lA 104 :DIFLEIVTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=89284 # 2b8nA.179.192 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)G181 (2b8nA)V183 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (2b8nA)D189 because G (3-10) conformation "forbidden" or filtered. T0547 179 :NI 2b8nA 181 :KV T0547 182 :LRVRL 2b8nA 184 :ALVLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=89286 # 1vliA.179.187 read from T0547.t06.many.frag # found chain 1vliA in template set T0547 179 :NIGLRVRLH 1vliA 176 :IAIMHCVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=89287 # 1gqiA.179.233 read from T0547.t06.many.frag # found chain 1gqiA in training set T0547 179 :NIGLRVRLH 1gqiA 238 :KMYLSINFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=89288 # 1hqsA.179.139 read from T0547.t06.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)H187 (1hqsA)E148 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NIGLRVRL 1hqsA 140 :MVIFRENT Number of specific fragments extracted= 1 number of extra gaps= 1 total=89289 # 1xgkA.179.106 read from T0547.t06.many.frag # found chain 1xgkA in training set T0547 179 :NIGLRVRLH 1xgkA 107 :HYIYSSMPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=89290 # 1qvzA.179.4 read from T0547.t06.many.frag # found chain 1qvzA in template set T0547 179 :NIGLRVRLH 1qvzA 5 :KVLLALTSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=89291 # 1r2qA.179.112 read from T0547.t06.many.frag # found chain 1r2qA in training set Warning: unaligning (T0547)L186 (1r2qA)K134 because L (left) conformation "forbidden" or filtered. T0547 179 :NIGLRVR 1r2qA 127 :VIALSGN T0547 187 :H 1r2qA 135 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=89293 # 1cs1A.179.138 read from T0547.t06.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)L186 (1cs1A)P146 because C (cis) conformation "forbidden" or filtered. T0547 179 :NIGLRVR 1cs1A 139 :KLVLVES T0547 187 :H 1cs1A 147 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=89295 # 1iuqA.179.130 read from T0547.t06.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (1iuqA)N138 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (1iuqA)N138 T0547 179 :NIGLR 1iuqA 132 :NVVLI T0547 186 :LH 1iuqA 139 :HQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=89297 # 2aqjA.179.32 read from T0547.t06.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)G181 (2aqjA)T35 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NI 2aqjA 33 :NI T0547 182 :LRVRLH 2aqjA 36 :LIESAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=89299 # 2cvbA.179.67 read from T0547.t06.many.frag # found chain 2cvbA in training set T0547 179 :NIGLRVRLH 2cvbA 68 :FVGINANDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=89300 # 1nytA.179.181 read from T0547.t06.many.frag # found chain 1nytA in training set T0547 179 :NIGLRVRLH 1nytA 182 :DLIINATSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=89301 # 1bouB.179.51 read from T0547.t06.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)G181 (1bouB)V54 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1bouB)Y58 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NI 1bouB 52 :DV T0547 182 :LRV 1bouB 55 :ILV T0547 186 :LH 1bouB 59 :ND Number of specific fragments extracted= 3 number of extra gaps= 2 total=89304 # 2bfdB.179.131 read from T0547.t06.many.frag # found chain 2bfdB in training set T0547 179 :NIGLRVRLH 2bfdB 129 :SLTIRSPWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=89305 # 1muwA.179.175 read from T0547.t06.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)G181 (1muwA)A178 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1muwA)N184 because Y (epsilon') conformation "forbidden" or filtered. T0547 179 :NI 1muwA 176 :RF T0547 182 :LRVRL 1muwA 179 :IEPKP Number of specific fragments extracted= 2 number of extra gaps= 2 total=89307 # 1z90A.179.129 read from T0547.t06.many.frag # found chain 1z90A in template set T0547 179 :NIGLRVRLH 1z90A 130 :PLVLMNSFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=89308 # 1v72A.179.141 read from T0547.t06.many.frag # found chain 1v72A in template set Warning: unaligning (T0547)G181 (1v72A)C144 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1v72A)A150 Warning: unaligning (T0547)H187 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v72A)A150 T0547 179 :NI 1v72A 142 :PA T0547 182 :LRVR 1v72A 145 :VSIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=89310 # 2aebA.179.225 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)G181 (2aebA)H228 because E (beta_S) conformation "forbidden" or filtered. T0547 179 :NI 2aebA 226 :PI T0547 182 :LRVRLH 2aebA 229 :LSFDVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=89312 # 1knwA.180.138 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 180 :IGLRVRLHS 1knwA 139 :VWLRVNPGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=89313 # 7odcA.180.150 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G181 (7odcA)V152 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (7odcA)R154 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 T0547 180 :I 7odcA 151 :L T0547 182 :L 7odcA 153 :L T0547 184 :VR 7odcA 155 :IA Number of specific fragments extracted= 3 number of extra gaps= 2 total=89316 # 2fa8A.180.9 read from T0547.t06.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)G181 (2fa8A)A9 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L182 (2fa8A)I10 because D (zeta) conformation "forbidden" or filtered. T0547 180 :I 2fa8A 8 :I T0547 183 :RVRLHS 2fa8A 11 :RYCTQC Number of specific fragments extracted= 2 number of extra gaps= 1 total=89318 # 1eexB.180.62 read from T0547.t06.many.frag # found chain 1eexB in training set Warning: unaligning (T0547)G181 (1eexB)I64 because P (beta_P) conformation "forbidden" or filtered. T0547 180 :I 1eexB 63 :V T0547 182 :LRVRLHS 1eexB 65 :IAVGPAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=89320 # 1rttA.180.74 read from T0547.t06.many.frag # found chain 1rttA in training set T0547 180 :IGLRVRLHS 1rttA 75 :ALLFATPEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=89321 # 1zp4A.180.146 read from T0547.t06.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)S188 (1zp4A)V155 because S (epsilon) conformation "forbidden" or filtered. T0547 180 :IGLRVRLH 1zp4A 147 :ISVAAYPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=89322 # 1zpdA.180.161 read from T0547.t06.many.frag # found chain 1zpdA in template set T0547 180 :IGLRVRLHS 1zpdA 162 :VYLEIACNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=89323 # 1w8sA.180.140 read from T0547.t06.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)H187 (1w8sA)R148 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :IGLRVRL 1w8sA 141 :LVVESFP T0547 188 :S 1w8sA 149 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=89325 # 2b8nA.180.193 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 180 :IGLRVRLHS 2b8nA 182 :VVALVLSDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=89326 # 1xgkA.180.107 read from T0547.t06.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)R185 (1xgkA)M113 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :IGLRV 1xgkA 108 :YIYSS T0547 186 :LHS 1xgkA 114 :PDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=89328 # 1q2lA.180.253 read from T0547.t06.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)G181 (1q2lA)I278 because E (beta_S) conformation "forbidden" or filtered. T0547 180 :I 1q2lA 277 :I T0547 182 :LRVRLHS 1q2lA 279 :IHYVPAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89330 # 1odzA.180.167 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)R185 (1odzA)Y210 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1odzA)E212 because L (left) conformation "forbidden" or filtered. T0547 180 :IGLRV 1odzA 205 :VIFRL T0547 186 :L 1odzA 211 :H T0547 188 :S 1odzA 213 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=89333 # 1bouB.180.52 read from T0547.t06.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)R185 (1bouB)Y58 because Y (epsilon') conformation "forbidden" or filtered. T0547 180 :IGLRV 1bouB 53 :VVILV T0547 186 :LHS 1bouB 59 :NDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=89335 # 1hqsA.180.140 read from T0547.t06.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)S188 (1hqsA)D149 because S (epsilon) conformation "forbidden" or filtered. T0547 180 :IGLRVRLH 1hqsA 141 :VIFRENTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=89336 # 1iuqA.180.131 read from T0547.t06.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)G181 (1iuqA)V134 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (1iuqA)N138 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (1iuqA)N138 T0547 180 :I 1iuqA 133 :V T0547 182 :LR 1iuqA 135 :LI T0547 186 :LHS 1iuqA 139 :HQT Number of specific fragments extracted= 3 number of extra gaps= 2 total=89339 # 1gqiA.180.234 read from T0547.t06.many.frag # found chain 1gqiA in training set T0547 180 :IGLRVRLHS 1gqiA 239 :MYLSINFNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=89340 # 1vhvA.180.89 read from T0547.t06.many.frag # found chain 1vhvA in template set Warning: unaligning (T0547)L186 (1vhvA)G83 because S (epsilon) conformation "forbidden" or filtered. T0547 180 :IGLRVR 1vhvA 77 :VVLLVP T0547 187 :HS 1vhvA 84 :DP Number of specific fragments extracted= 2 number of extra gaps= 1 total=89342 # 1tqjA.180.114 read from T0547.t06.many.frag # found chain 1tqjA in training set T0547 180 :IGLRVRLHS 1tqjA 115 :AGAVLNPST Number of specific fragments extracted= 1 number of extra gaps= 0 total=89343 # 2cx7A.180.32 read from T0547.t06.many.frag # found chain 2cx7A in training set Warning: unaligning (T0547)G181 (2cx7A)A34 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (2cx7A)R38 because P (beta_P) conformation "forbidden" or filtered. T0547 180 :I 2cx7A 33 :L T0547 182 :LRV 2cx7A 35 :LAV T0547 186 :LHS 2cx7A 39 :PDP Number of specific fragments extracted= 3 number of extra gaps= 2 total=89346 # 1vliA.180.188 read from T0547.t06.many.frag # found chain 1vliA in template set T0547 180 :IGLRVRLHS 1vliA 177 :AIMHCVAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=89347 # 1f9vA.180.6 read from T0547.t06.many.frag # found chain 1f9vA in training set T0547 180 :IGLRVRLHS 1f9vA 389 :VYCRIRPAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=89348 # 2bfdB.180.132 read from T0547.t06.many.frag # found chain 2bfdB in training set T0547 180 :IGLRVRLHS 2bfdB 130 :LTIRSPWGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=89349 # 1k5cA.180.222 read from T0547.t06.many.frag # found chain 1k5cA in training set Warning: unaligning (T0547)G181 (1k5cA)G224 because H (helix) conformation "forbidden" or filtered. T0547 180 :I 1k5cA 223 :Y T0547 182 :LRVRLHS 1k5cA 225 :VRIKAQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=89351 # 2f62A.180.69 read from T0547.t06.many.frag # found chain 2f62A in training set Warning: unaligning (T0547)I180 (2f62A)A70 because Y (epsilon') conformation "forbidden" or filtered. T0547 181 :GLRVRLHS 2f62A 71 :VIADLSPF Number of specific fragments extracted= 1 number of extra gaps= 1 total=89352 # 1kgdA.180.119 read from T0547.t06.many.frag # found chain 1kgdA in training set Warning: unaligning (T0547)R185 (1kgdA)A854 because P (beta_P) conformation "forbidden" or filtered. T0547 180 :IGLRV 1kgdA 849 :VVFIA T0547 186 :LHS 1kgdA 855 :PTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=89354 # 1lu4A.180.27 read from T0547.t06.many.frag # found chain 1lu4A in training set Warning: unaligning (T0547)G181 (1lu4A)L1029 because P (beta_P) conformation "forbidden" or filtered. T0547 180 :I 1lu4A 1028 :V T0547 182 :LRVRLHS 1lu4A 1030 :WFWTPWC Number of specific fragments extracted= 2 number of extra gaps= 1 total=89356 # 1qvzA.180.5 read from T0547.t06.many.frag # found chain 1qvzA in template set Warning: unaligning (T0547)S188 (1qvzA)N14 because D (zeta) conformation "forbidden" or filtered. T0547 180 :IGLRVRLH 1qvzA 6 :VLLALTSY Number of specific fragments extracted= 1 number of extra gaps= 1 total=89357 # 1r2qA.180.113 read from T0547.t06.many.frag # found chain 1r2qA in training set Warning: unaligning (T0547)L186 (1r2qA)K134 because L (left) conformation "forbidden" or filtered. T0547 180 :IGLRVR 1r2qA 128 :IALSGN T0547 187 :HS 1r2qA 135 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=89359 # 1x9iA.180.81 read from T0547.t06.many.frag # found chain 1x9iA in training set T0547 180 :IGLRVRLHS 1x9iA 82 :LLIAVSYSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=89360 # 1v72A.180.142 read from T0547.t06.many.frag # found chain 1v72A in template set Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1v72A)A150 Warning: unaligning (T0547)H187 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v72A)A150 Warning: unaligning (T0547)S188 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v72A)T151 T0547 180 :IGLRVR 1v72A 143 :ACVSIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=89361 # 1knwA.181.139 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G181 (1knwA)W140 because E (beta_S) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1knwA 141 :LRVNPGFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=89362 # 2fa8A.181.10 read from T0547.t06.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)A189 (2fa8A)N17 because L (left) conformation "forbidden" or filtered. T0547 181 :GLRVRLHS 2fa8A 9 :AIRYCTQC Number of specific fragments extracted= 1 number of extra gaps= 1 total=89363 # 1q2lA.181.254 read from T0547.t06.many.frag # found chain 1q2lA in template set T0547 181 :GLRVRLHSA 1q2lA 278 :IIHYVPALP Number of specific fragments extracted= 1 number of extra gaps= 0 total=89364 # 1f9vA.181.7 read from T0547.t06.many.frag # found chain 1f9vA in training set T0547 181 :GLRVRLHSA 1f9vA 390 :YCRIRPALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=89365 # 1eexB.181.63 read from T0547.t06.many.frag # found chain 1eexB in training set Warning: unaligning (T0547)G181 (1eexB)I64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1eexB)G72 because T (delta_L) conformation "forbidden" or filtered. T0547 182 :LRVRLHS 1eexB 65 :IAVGPAF Number of specific fragments extracted= 1 number of extra gaps= 2 total=89366 # 2b8nA.181.194 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)G181 (2b8nA)V183 because D (zeta) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 2b8nA 184 :ALVLSDVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=89367 # 1k5cA.181.223 read from T0547.t06.many.frag # found chain 1k5cA in training set T0547 181 :GLRVRLHSA 1k5cA 224 :GVRIKAQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=89368 # 2bfdB.181.133 read from T0547.t06.many.frag # found chain 2bfdB in training set T0547 181 :GLRVRLHSA 2bfdB 131 :TIRSPWGCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=89369 # 1zpdA.181.162 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)H187 (1zpdA)N169 because G (3-10) conformation "forbidden" or filtered. T0547 181 :GLRVRL 1zpdA 163 :YLEIAC T0547 188 :SA 1zpdA 170 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=89371 # 1tqjA.181.115 read from T0547.t06.many.frag # found chain 1tqjA in training set Warning: unaligning (T0547)A189 (1tqjA)P124 because P (beta_P) conformation "forbidden" or filtered. T0547 181 :GLRVRLHS 1tqjA 116 :GAVLNPST Number of specific fragments extracted= 1 number of extra gaps= 1 total=89372 # 1iuqA.181.132 read from T0547.t06.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (1iuqA)N138 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (1iuqA)N138 T0547 181 :GLR 1iuqA 134 :VLI T0547 186 :LHSA 1iuqA 139 :HQTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=89374 # 1zp4A.181.147 read from T0547.t06.many.frag # found chain 1zp4A in template set T0547 181 :GLRVRLHSA 1zp4A 148 :SVAAYPEVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=89375 # 2cx7A.181.33 read from T0547.t06.many.frag # found chain 2cx7A in training set T0547 181 :GLRVRLHSA 2cx7A 34 :ALAVRPDPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=89376 # 1lu4A.181.28 read from T0547.t06.many.frag # found chain 1lu4A in training set Warning: unaligning (T0547)G181 (1lu4A)L1029 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1lu4A 1030 :WFWTPWCP Number of specific fragments extracted= 1 number of extra gaps= 1 total=89377 # 1nofA.181.48 read from T0547.t06.many.frag # found chain 1nofA in training set T0547 181 :GLRVRLHSA 1nofA 79 :IMRVRIDPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=89378 # 1rttA.181.75 read from T0547.t06.many.frag # found chain 1rttA in training set Warning: unaligning (T0547)G181 (1rttA)L76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1rttA)N84 because L (left) conformation "forbidden" or filtered. T0547 182 :LRVRLHS 1rttA 77 :LFATPEY Number of specific fragments extracted= 1 number of extra gaps= 2 total=89379 # 1gqiA.181.235 read from T0547.t06.many.frag # found chain 1gqiA in training set Warning: unaligning (T0547)R183 (1gqiA)S242 because P (beta_P) conformation "forbidden" or filtered. T0547 181 :GL 1gqiA 240 :YL T0547 184 :VRLHSA 1gqiA 243 :INFNSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=89381 # 1whsA.181.50 read from T0547.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)L186 (1whsA)G52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1whsA)G53 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1whsA)P54 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1whsA)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 181 :GLRVR 1whsA 47 :VLWLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=89382 # 7odcA.181.151 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G181 (7odcA)V152 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)K169 T0547 182 :LRVR 7odcA 153 :LRIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=89383 # 1w8sA.181.141 read from T0547.t06.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)G181 (1w8sA)V142 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1w8sA)R148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1w8sA)G149 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1w8sA)G150 because S (epsilon) conformation "forbidden" or filtered. T0547 182 :LRVRL 1w8sA 143 :VESFP Number of specific fragments extracted= 1 number of extra gaps= 2 total=89384 # 2akaB.181.64 read from T0547.t06.many.frag # found chain 2akaB in template set T0547 181 :GLRVRLHSA 2akaB 70 :VLQLVNSTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=89385 # 1byi.181.141 read from T0547.t06.many.frag # found chain 1byi in training set Warning: unaligning (T0547)H187 (1byi)K148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1byi)L149 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1byi)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 181 :GLRVRL 1byi 142 :ILVVGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=89386 # 2bfwA.181.37 read from T0547.t06.many.frag # found chain 2bfwA in training set T0547 181 :GLRVRLHSA 2bfwA 251 :TFMFIGRFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=89387 # 1hjrA.181.2 read from T0547.t06.many.frag # found chain 1hjrA in template set T0547 181 :GLRVRLHSA 1hjrA 3 :ILGIDPGSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=89388 # 1t71A.181.118 read from T0547.t06.many.frag # found chain 1t71A in template set Warning: unaligning (T0547)G181 (1t71A)R119 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1t71A)G125 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRVRL 1t71A 120 :ITNLL T0547 188 :SA 1t71A 126 :TS Number of specific fragments extracted= 2 number of extra gaps= 2 total=89390 # 1xgkA.181.108 read from T0547.t06.many.frag # found chain 1xgkA in training set Warning: unaligning (T0547)R185 (1xgkA)M113 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1xgkA)D115 because D (zeta) conformation "forbidden" or filtered. T0547 181 :GLRV 1xgkA 109 :IYSS T0547 186 :L 1xgkA 114 :P T0547 188 :SA 1xgkA 116 :HS Number of specific fragments extracted= 3 number of extra gaps= 2 total=89393 # 1kv7A.181.60 read from T0547.t06.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)G181 (1kv7A)D89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R185 (1kv7A)Q93 because G (3-10) conformation "forbidden" or filtered. T0547 182 :LRV 1kv7A 90 :IYN T0547 186 :LHSA 1kv7A 94 :LTEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=89395 # 1ccwA.181.57 read from T0547.t06.many.frag # found chain 1ccwA in training set Warning: unaligning (T0547)G181 (1ccwA)I58 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1ccwA)Y64 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1ccwA)G65 because T (delta_L) conformation "forbidden" or filtered. T0547 182 :LRVRL 1ccwA 59 :LVSSL T0547 189 :A 1ccwA 66 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=89397 # 2axoA.181.44 read from T0547.t06.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)G181 (2axoA)V45 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L186 (2axoA)T50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (2axoA)S51 because Y (epsilon') conformation "forbidden" or filtered. T0547 182 :LRVR 2axoA 46 :VELF T0547 188 :SA 2axoA 52 :QG Number of specific fragments extracted= 2 number of extra gaps= 2 total=89399 # 1hqsA.181.141 read from T0547.t06.many.frag # found chain 1hqsA in training set T0547 181 :GLRVRLHSA 1hqsA 142 :IFRENTEDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=89400 # 1knwA.182.140 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)H187 (1knwA)G146 because T (delta_L) conformation "forbidden" or filtered. T0547 182 :LRVRL 1knwA 141 :LRVNP T0547 188 :SAG 1knwA 147 :FGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=89402 # 1q2lA.182.255 read from T0547.t06.many.frag # found chain 1q2lA in template set T0547 182 :LRVRLHSAG 1q2lA 279 :IHYVPALPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=89403 # 2b8nA.182.195 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 182 :LRVRLHSAG 2b8nA 184 :ALVLSDVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=89404 # 1k5cA.182.224 read from T0547.t06.many.frag # found chain 1k5cA in training set Warning: unaligning (T0547)A189 (1k5cA)T232 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1k5cA)A233 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRVRLHS 1k5cA 225 :VRIKAQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=89405 # 2bfdB.182.134 read from T0547.t06.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)H187 (2bfdB)G137 because S (epsilon) conformation "forbidden" or filtered. T0547 182 :LRVRL 2bfdB 132 :IRSPW T0547 188 :SAG 2bfdB 138 :CVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=89407 # 2fa8A.182.11 read from T0547.t06.many.frag # found chain 2fa8A in template set Warning: unaligning (T0547)R183 (2fa8A)R11 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :L 2fa8A 10 :I T0547 184 :VRLHSAG 2fa8A 12 :YCTQCNW Number of specific fragments extracted= 2 number of extra gaps= 1 total=89409 # 1ob8A.182.85 read from T0547.t06.many.frag # found chain 1ob8A in training set T0547 182 :LRVRLHSAG 1ob8A 86 :IAIKFKQVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=89410 # 1tqjA.182.116 read from T0547.t06.many.frag # found chain 1tqjA in training set T0547 182 :LRVRLHSAG 1tqjA 117 :AVLNPSTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=89411 # 1oygA.182.234 read from T0547.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)L182 (1oygA)F261 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R183 (1oygA)E262 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V184 (1oygA)A263 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1oygA)E268 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1oygA)D269 because G (3-10) conformation "forbidden" or filtered. T0547 185 :RLHS 1oygA 264 :NTGT Number of specific fragments extracted= 1 number of extra gaps= 2 total=89412 # 2cx7A.182.34 read from T0547.t06.many.frag # found chain 2cx7A in training set T0547 182 :LRVRLHSAG 2cx7A 35 :LAVRPDPKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=89413 # 2akaB.182.65 read from T0547.t06.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)A189 (2akaB)T78 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRVRLHS 2akaB 71 :LQLVNST T0547 190 :G 2akaB 79 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=89415 # 1o12A.182.161 read from T0547.t06.many.frag # found chain 1o12A in template set T0547 182 :LRVRLHSAG 1o12A 150 :LTFAPEIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=89416 # 1lfdA.182.5 read from T0547.t06.many.frag # found chain 1lfdA in template set Warning: unaligning (T0547)A189 (1lfdA)D26 because D (zeta) conformation "forbidden" or filtered. T0547 182 :LRVRLHS 1lfdA 19 :IRVSLDV T0547 190 :G 1lfdA 27 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=89418 # 2bw4A.182.82 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)L186 (2bw4A)N87 because D (zeta) conformation "forbidden" or filtered. T0547 182 :LRVR 2bw4A 83 :LRLI T0547 187 :HSAG 2bw4A 88 :PDTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=89420 # 2bfwA.182.38 read from T0547.t06.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)L186 (2bfwA)G256 because Y (epsilon') conformation "forbidden" or filtered. T0547 182 :LRVR 2bfwA 252 :FMFI T0547 187 :HSAG 2bfwA 257 :RFDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=89422 # 1nofA.182.49 read from T0547.t06.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)H187 (1nofA)D85 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRVRL 1nofA 80 :MRVRI T0547 188 :SAG 1nofA 86 :PDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=89424 # 2fkcA.182.64 read from T0547.t06.many.frag # found chain 2fkcA in template set T0547 182 :LRVRLHSAG 2fkcA 65 :VQVLVFYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=89425 # 1t77A.182.77 read from T0547.t06.many.frag # found chain 1t77A in template set T0547 182 :LRVRLHSAG 1t77A 2153 :LEIFMANRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=89426 # 1pcxA.182.382 read from T0547.t06.many.frag # found chain 1pcxA in template set T0547 182 :LRVRLHSAG 1pcxA 499 :LFLASEDYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=89427 # 1zpdA.182.163 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)G190 (1zpdA)S172 because G (3-10) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 1zpdA 164 :LEIACNIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=89428 # 1twdA.182.90 read from T0547.t06.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)R183 (1twdA)T92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V184 (1twdA)G93 because Y (epsilon') conformation "forbidden" or filtered. T0547 182 :L 1twdA 91 :V T0547 185 :RLHSAG 1twdA 94 :VLDVDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=89430 # 1whsA.182.51 read from T0547.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)L186 (1whsA)G52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H187 (1whsA)G53 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S188 (1whsA)P54 because C (cis) conformation "forbidden" or filtered. T0547 182 :LRVR 1whsA 48 :LWLN T0547 189 :AG 1whsA 55 :GC Number of specific fragments extracted= 2 number of extra gaps= 1 total=89432 # 1kv7A.182.61 read from T0547.t06.many.frag # found chain 1kv7A in training set T0547 182 :LRVRLHSAG 1kv7A 90 :IYNQLTEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=89433 # 2pth.182.131 read from T0547.t06.many.frag # found chain 2pth in training set T0547 182 :LRVRLHSAG 2pth 132 :LRIGIGHPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=89434 # 2b0tA.182.195 read from T0547.t06.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)A189 (2b0tA)G203 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2b0tA)T204 because P (beta_P) conformation "forbidden" or filtered. T0547 182 :LRVRLHS 2b0tA 196 :IKHIAAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=89435 # 1iuqA.182.133 read from T0547.t06.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)V184 because of BadResidue code BAD_PEPTIDE in next template residue (1iuqA)N138 Warning: unaligning (T0547)R185 because of BadResidue code BAD_PEPTIDE at template residue (1iuqA)N138 T0547 182 :LR 1iuqA 135 :LI T0547 186 :LHSAG 1iuqA 139 :HQTEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=89437 # 1zp4A.182.148 read from T0547.t06.many.frag # found chain 1zp4A in template set Warning: unaligning (T0547)S188 (1zp4A)V155 because S (epsilon) conformation "forbidden" or filtered. T0547 182 :LRVRLH 1zp4A 149 :VAAYPE T0547 189 :AG 1zp4A 156 :HP Number of specific fragments extracted= 2 number of extra gaps= 1 total=89439 1x9gA expands to /projects/compbio/data/pdb/1x9g.pdb.gz 1x9gA:# 1x9gA.182.63 read from T0547.t06.many.frag # adding 1x9gA to template set # found chain 1x9gA in template set Warning: unaligning (T0547)L186 (1x9gA)Y60 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1x9gA)G63 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1x9gA)G65 T0547 182 :LRVR 1x9gA 56 :VTEH T0547 187 :HS 1x9gA 61 :PK Number of specific fragments extracted= 2 number of extra gaps= 2 total=89441 # 1f9vA.182.8 read from T0547.t06.many.frag # found chain 1f9vA in training set T0547 182 :LRVRLHSAG 1f9vA 391 :CRIRPALKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=89442 # 2plc.182.153 read from T0547.t06.many.frag # found chain 2plc in template set Warning: unaligning (T0547)G190 (2plc)K182 because E (beta_S) conformation "forbidden" or filtered. T0547 182 :LRVRLHSA 2plc 174 :LLSENHTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=89443 # 1knwA.183.141 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)H187 (1knwA)G146 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1knwA)G148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1knwA)H149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1knwA)G150 because S (epsilon) conformation "forbidden" or filtered. T0547 183 :RVRL 1knwA 142 :RVNP T0547 188 :S 1knwA 147 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=89445 # 2b8nA.183.196 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)R185 (2b8nA)L187 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (2b8nA)D193 because L (left) conformation "forbidden" or filtered. T0547 183 :RV 2b8nA 185 :LV T0547 186 :LHSAG 2b8nA 188 :SDVLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=89447 # 1lfdA.183.6 read from T0547.t06.many.frag # found chain 1lfdA in template set Warning: unaligning (T0547)G190 (1lfdA)N27 because G (3-10) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1lfdA 20 :RVSLDVD T0547 191 :V 1lfdA 28 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=89449 # 1o12A.183.162 read from T0547.t06.many.frag # found chain 1o12A in template set Warning: unaligning (T0547)S188 (1o12A)I156 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1o12A)E157 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RVRLH 1o12A 151 :TFAPE T0547 190 :GV 1o12A 158 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=89451 # 1q2lA.183.256 read from T0547.t06.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)G190 (1q2lA)R287 because E (beta_S) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1q2lA 280 :HYVPALP T0547 191 :V 1q2lA 288 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=89453 # 2bfdB.183.135 read from T0547.t06.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)A189 (2bfdB)V139 because G (3-10) conformation "forbidden" or filtered. T0547 183 :RVRLHS 2bfdB 133 :RSPWGC T0547 190 :GV 2bfdB 140 :GH Number of specific fragments extracted= 2 number of extra gaps= 1 total=89455 # 1mpgA.183.48 read from T0547.t06.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)V191 (1mpgA)H57 because L (left) conformation "forbidden" or filtered. T0547 183 :RVRLHSAG 1mpgA 49 :TAIPDIAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=89456 # 1nofA.183.50 read from T0547.t06.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)R183 (1nofA)R81 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRLHSAGV 1nofA 82 :VRIDPDSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=89457 # 1unnC.183.52 read from T0547.t06.many.frag # found chain 1unnC in template set Warning: unaligning (T0547)S188 (1unnC)D294 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1unnC)F295 because T (delta_L) conformation "forbidden" or filtered. T0547 183 :RVRLH 1unnC 289 :KLKFD T0547 190 :GV 1unnC 296 :QQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=89459 # 2b0tA.183.196 read from T0547.t06.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)A189 (2b0tA)G203 because T (delta_L) conformation "forbidden" or filtered. T0547 183 :RVRLHS 2b0tA 197 :KHIAAD T0547 190 :GV 2b0tA 204 :TE Number of specific fragments extracted= 2 number of extra gaps= 1 total=89461 # 1twdA.183.91 read from T0547.t06.many.frag # found chain 1twdA in training set T0547 183 :RVRLHSAGV 1twdA 92 :TGVLDVDGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=89462 # 1oygA.183.235 read from T0547.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)G190 (1oygA)D269 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1oygA)G270 because L (left) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1oygA 262 :EANTGTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=89463 # 2bfwA.183.39 read from T0547.t06.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)L186 (2bfwA)G256 because Y (epsilon') conformation "forbidden" or filtered. T0547 183 :RVR 2bfwA 253 :MFI T0547 187 :HSAGV 2bfwA 257 :RFDRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=89465 # 1t9hA.183.91 read from T0547.t06.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)G190 (1t9hA)P90 because C (cis) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1t9hA 83 :LVFSAVQ T0547 191 :V 1t9hA 91 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=89467 # 1k5cA.183.225 read from T0547.t06.many.frag # found chain 1k5cA in training set Warning: unaligning (T0547)G190 (1k5cA)A233 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1k5cA 226 :RIKAQRT T0547 191 :V 1k5cA 234 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=89469 # 1rcqA.183.119 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)A189 (1rcqA)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1rcqA)H128 because L (left) conformation "forbidden" or filtered. T0547 183 :R 1rcqA 120 :W T0547 187 :HS 1rcqA 124 :DS T0547 190 :G 1rcqA 127 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=89472 # 1c93A.183.41 read from T0547.t06.many.frag # found chain 1c93A in template set Warning: unaligning (T0547)G190 (1c93A)T54 because G (3-10) conformation "forbidden" or filtered. T0547 183 :RVRLHSA 1c93A 47 :NINYDTG T0547 191 :V 1c93A 55 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=89474 # 2c27A.183.65 read from T0547.t06.many.frag # found chain 2c27A in template set Warning: unaligning (T0547)A189 (2c27A)G72 because S (epsilon) conformation "forbidden" or filtered. T0547 183 :RVRLHS 2c27A 66 :NLSPPR T0547 190 :GV 2c27A 73 :AG Number of specific fragments extracted= 2 number of extra gaps= 1 total=89476 # 1ynfA.183.204 read from T0547.t06.many.frag # found chain 1ynfA in template set Warning: unaligning (T0547)H187 (1ynfA)R198 because Y (epsilon') conformation "forbidden" or filtered. T0547 183 :RVRL 1ynfA 194 :FVYG T0547 188 :SAGV 1ynfA 199 :EEGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=89478 # 1hqz1.183.33 read from T0547.t06.many.frag # found chain 1hqz1 in template set T0547 183 :RVRLHSAGV 1hqz1 34 :IISPNAKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=89479 # 1k0mA.183.10 read from T0547.t06.many.frag # found chain 1k0mA in training set Warning: unaligning (T0547)H187 (1k0mA)G15 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RVRL 1k0mA 11 :FVKA T0547 188 :SAGV 1k0mA 16 :SDGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=89481 2c36A expands to /projects/compbio/data/pdb/2c36.pdb.gz 2c36A:Skipped atom 1608, because occupancy 0.400 <= existing 0.600 in 2c36A Skipped atom 1609, because occupancy 0.400 <= existing 0.600 in 2c36A Skipped atom 1610, because occupancy 0.400 <= existing 0.600 in 2c36A Skipped atom 1611, because occupancy 0.400 <= existing 0.600 in 2c36A # 2c36A.183.157 read from T0547.t06.many.frag # adding 2c36A to template set # found chain 2c36A in template set T0547 183 :RVRLHSAGV 2c36A 180 :ILEHRAKGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=89482 # 1knyA.183.53 read from T0547.t06.many.frag # found chain 1knyA in template set Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1knyA)T59 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1knyA)T59 T0547 183 :RVRL 1knyA 54 :MCVM T0547 189 :AGV 1knyA 60 :EEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=89484 # 1t77A.183.78 read from T0547.t06.many.frag # found chain 1t77A in template set Warning: unaligning (T0547)A189 (1t77A)R2160 because T (delta_L) conformation "forbidden" or filtered. T0547 183 :RVRLHS 1t77A 2154 :EIFMAN T0547 190 :GV 1t77A 2161 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=89486 # 1tqjA.183.117 read from T0547.t06.many.frag # found chain 1tqjA in training set Warning: unaligning (T0547)A189 (1tqjA)P124 because P (beta_P) conformation "forbidden" or filtered. T0547 183 :RVRLHS 1tqjA 118 :VLNPST T0547 190 :GV 1tqjA 125 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=89488 # 1xi1A.183.103 read from T0547.t06.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)A189 (1xi1A)K110 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1xi1A)K112 because T (delta_L) conformation "forbidden" or filtered. T0547 183 :RVRLHS 1xi1A 104 :DICLGY T0547 190 :G 1xi1A 111 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=89490 # 1vjjA.183.132 read from T0547.t06.many.frag # found chain 1vjjA in template set T0547 183 :RVRLHSAGV 1vjjA 133 :LFNPWLNVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=89491 # 1xovA.183.88 read from T0547.t06.many.frag # found chain 1xovA in template set Warning: unaligning (T0547)A189 (1xovA)G83 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE in next template residue (1xovA)G85 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE at template residue (1xovA)G85 T0547 183 :RVRLHS 1xovA 77 :SVHLNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=89492 1ixmA expands to /projects/compbio/data/pdb/1ixm.pdb.gz 1ixmA:# 1ixmA.183.135 read from T0547.t06.many.frag # adding 1ixmA to template set # found chain 1ixmA in template set T0547 183 :RVRLHSAGV 1ixmA 136 :SLQTDHPDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=89493 # 1jfrA.183.85 read from T0547.t06.many.frag # found chain 1jfrA in template set Warning: unaligning (T0547)A189 (1jfrA)T92 because G (3-10) conformation "forbidden" or filtered. T0547 183 :RVRLHS 1jfrA 86 :TIDTNT T0547 190 :GV 1jfrA 93 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=89495 # 1o12A.184.163 read from T0547.t06.many.frag # found chain 1o12A in template set T0547 184 :VRLHSAGVG 1o12A 152 :FAPEIESSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=89496 # 1lfdA.184.7 read from T0547.t06.many.frag # found chain 1lfdA in template set Warning: unaligning (T0547)H187 (1lfdA)D24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1lfdA)N27 because G (3-10) conformation "forbidden" or filtered. T0547 184 :VRL 1lfdA 21 :VSL T0547 188 :SA 1lfdA 25 :VD T0547 191 :VG 1lfdA 28 :GN Number of specific fragments extracted= 3 number of extra gaps= 2 total=89499 # 1mpgA.184.49 read from T0547.t06.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)G190 (1mpgA)R56 because G (3-10) conformation "forbidden" or filtered. T0547 184 :VRLHSA 1mpgA 50 :AIPDIA T0547 191 :VG 1mpgA 57 :HT Number of specific fragments extracted= 2 number of extra gaps= 1 total=89501 # 1knwA.184.142 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G192 (1knwA)H151 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRLHSAGV 1knwA 143 :VNPGFGHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=89502 # 2b8nA.184.197 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)V191 (2b8nA)D193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (2b8nA)R194 because N (gamma') conformation "forbidden" or filtered. T0547 184 :VRLHSAG 2b8nA 186 :VLSDVLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=89503 # 1unnC.184.53 read from T0547.t06.many.frag # found chain 1unnC in template set Warning: unaligning (T0547)A189 (1unnC)F295 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1unnC)Q296 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRLHS 1unnC 290 :LKFDD T0547 191 :VG 1unnC 297 :QT Number of specific fragments extracted= 2 number of extra gaps= 1 total=89505 # 2b0tA.184.197 read from T0547.t06.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)G190 (2b0tA)T204 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRLHSA 2b0tA 198 :HIAADG T0547 191 :VG 2b0tA 205 :ET Number of specific fragments extracted= 2 number of extra gaps= 1 total=89507 # 1c93A.184.42 read from T0547.t06.many.frag # found chain 1c93A in template set Warning: unaligning (T0547)G190 (1c93A)T54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1c93A)K55 because L (left) conformation "forbidden" or filtered. T0547 184 :VRLHSA 1c93A 48 :INYDTG T0547 192 :G 1c93A 56 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=89509 # 1hqz1.184.34 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)H187 (1hqz1)N38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1hqz1)Y43 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRL 1hqz1 35 :ISP T0547 188 :SAGV 1hqz1 39 :AKKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=89511 # 1xi1A.184.104 read from T0547.t06.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)V191 (1xi1A)K112 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1xi1A)R113 because E (beta_S) conformation "forbidden" or filtered. T0547 184 :VRLHSAG 1xi1A 105 :ICLGYKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=89512 # 1nofA.184.51 read from T0547.t06.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)G192 (1nofA)K90 because G (3-10) conformation "forbidden" or filtered. T0547 184 :VRLHSAGV 1nofA 82 :VRIDPDSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=89513 # 2c27A.184.66 read from T0547.t06.many.frag # found chain 2c27A in template set Warning: unaligning (T0547)A189 (2c27A)G72 because S (epsilon) conformation "forbidden" or filtered. T0547 184 :VRLHS 2c27A 67 :LSPPR T0547 190 :GVG 2c27A 73 :AGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=89515 # 2bfwA.184.40 read from T0547.t06.many.frag # found chain 2bfwA in training set Warning: unaligning (T0547)L186 (2bfwA)G256 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (2bfwA)D259 because Y (epsilon') conformation "forbidden" or filtered. T0547 184 :VR 2bfwA 254 :FI T0547 187 :HS 2bfwA 257 :RF T0547 190 :GVG 2bfwA 260 :RGQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=89518 # 2bfdB.184.136 read from T0547.t06.many.frag # found chain 2bfdB in training set Warning: unaligning (T0547)H187 (2bfdB)G137 because S (epsilon) conformation "forbidden" or filtered. T0547 184 :VRL 2bfdB 134 :SPW T0547 188 :SAGVG 2bfdB 138 :CVGHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=89520 # 1gmuA.184.31 read from T0547.t06.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)S188 (1gmuA)D36 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1gmuA)G37 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1gmuA)R38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1gmuA)A40 because Y (epsilon') conformation "forbidden" or filtered. T0547 184 :VRLH 1gmuA 32 :VTLN T0547 191 :V 1gmuA 39 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=89522 # 1q2lA.184.257 read from T0547.t06.many.frag # found chain 1q2lA in template set T0547 184 :VRLHSAGVG 1q2lA 281 :YVPALPRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=89523 # 1oygA.184.236 read from T0547.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)V184 (1oygA)A263 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1oygA)G270 because L (left) conformation "forbidden" or filtered. T0547 185 :RLHSAG 1oygA 264 :NTGTED T0547 192 :G 1oygA 271 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=89525 # 1twdA.184.92 read from T0547.t06.many.frag # found chain 1twdA in training set T0547 184 :VRLHSAGVG 1twdA 93 :GVLDVDGNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=89526 # 1knyA.184.54 read from T0547.t06.many.frag # found chain 1knyA in template set Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1knyA)T59 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1knyA)T59 Warning: unaligning (T0547)G192 (1knyA)E63 because D (zeta) conformation "forbidden" or filtered. T0547 184 :VRL 1knyA 55 :CVM T0547 189 :AGV 1knyA 60 :EEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=89528 # 1dabA.184.519 read from T0547.t06.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)A189 (1dabA)N525 because D (zeta) conformation "forbidden" or filtered. T0547 184 :VRLHS 1dabA 520 :YRLAA T0547 190 :GVG 1dabA 526 :GNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=89530 # 1n35A.184.662 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)A189 (1n35A)S668 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1n35A)G670 because T (delta_L) conformation "forbidden" or filtered. T0547 184 :VRLHS 1n35A 663 :VNDSF T0547 190 :G 1n35A 669 :P T0547 192 :G 1n35A 671 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=89533 # 1hs6A.184.104 read from T0547.t06.many.frag # found chain 1hs6A in template set T0547 184 :VRLHSAGVG 1hs6A 104 :ISFETSPKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=89534 # 1vlaA.184.104 read from T0547.t06.many.frag # found chain 1vlaA in training set Warning: unaligning (T0547)A189 (1vlaA)D98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1vlaA)P101 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRLHS 1vlaA 93 :YIFKF T0547 190 :GV 1vlaA 99 :GE Number of specific fragments extracted= 2 number of extra gaps= 2 total=89536 # 1ixmA.184.136 read from T0547.t06.many.frag # found chain 1ixmA in template set T0547 184 :VRLHSAGVG 1ixmA 137 :LQTDHPDRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=89537 # 1rcqA.184.120 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)V184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rcqA)M123 Warning: unaligning (T0547)L186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rcqA)M123 Warning: unaligning (T0547)A189 (1rcqA)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1rcqA)H128 because L (left) conformation "forbidden" or filtered. T0547 187 :HS 1rcqA 124 :DS T0547 190 :G 1rcqA 127 :M T0547 192 :G 1rcqA 129 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=89540 # 2c36A.184.158 read from T0547.t06.many.frag # found chain 2c36A in template set Warning: unaligning (T0547)G192 (2c36A)C189 because P (beta_P) conformation "forbidden" or filtered. T0547 184 :VRLHSAGV 2c36A 181 :LEHRAKGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=89541 # 1tqjA.184.118 read from T0547.t06.many.frag # found chain 1tqjA in training set T0547 184 :VRLHSAGVG 1tqjA 119 :LNPSTPLDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=89542 # 1wn5A.184.32 read from T0547.t06.many.frag # found chain 1wn5A in training set T0547 184 :VRLHSAGVG 1wn5A 33 :ALSSDGRIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=89543 # 1pg6A.184.94 read from T0547.t06.many.frag # found chain 1pg6A in training set T0547 184 :VRLHSAGVG 1pg6A 88 :LAPNTPGQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=89544 # 1k0mA.184.11 read from T0547.t06.many.frag # found chain 1k0mA in training set T0547 184 :VRLHSAGVG 1k0mA 12 :VKAGSDGAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=89545 # 1o12A.185.164 read from T0547.t06.many.frag # found chain 1o12A in template set Warning: unaligning (T0547)H187 (1o12A)E155 because G (3-10) conformation "forbidden" or filtered. T0547 185 :RL 1o12A 153 :AP T0547 188 :SAGVGI 1o12A 156 :IESSEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89547 # 1mpgA.185.50 read from T0547.t06.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)R185 (1mpgA)I51 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1mpgA)R56 because G (3-10) conformation "forbidden" or filtered. T0547 186 :LHSA 1mpgA 52 :PDIA T0547 191 :VGI 1mpgA 57 :HTL Number of specific fragments extracted= 2 number of extra gaps= 2 total=89549 # 1lfdA.185.8 read from T0547.t06.many.frag # found chain 1lfdA in template set Warning: unaligning (T0547)G190 (1lfdA)N27 because G (3-10) conformation "forbidden" or filtered. T0547 185 :RLHSA 1lfdA 22 :SLDVD T0547 191 :VGI 1lfdA 28 :GNM Number of specific fragments extracted= 2 number of extra gaps= 1 total=89551 # 2b0tA.185.198 read from T0547.t06.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)A189 (2b0tA)G203 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2b0tA)T204 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (2b0tA)T206 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLHS 2b0tA 199 :IAAD T0547 191 :V 2b0tA 205 :E T0547 193 :I 2b0tA 207 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=89554 # 1c93A.185.43 read from T0547.t06.many.frag # found chain 1c93A in template set Warning: unaligning (T0547)G190 (1c93A)T54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1c93A)K55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1c93A)T56 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLHSA 1c93A 49 :NYDTG T0547 193 :I 1c93A 57 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=89556 # 1knwA.185.143 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)H187 (1knwA)G146 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1knwA)G148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1knwA)G150 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1knwA)H151 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RL 1knwA 144 :NP T0547 188 :S 1knwA 147 :F T0547 190 :G 1knwA 149 :H T0547 193 :I 1knwA 152 :S Number of specific fragments extracted= 4 number of extra gaps= 3 total=89560 # 1unnC.185.54 read from T0547.t06.many.frag # found chain 1unnC in template set Warning: unaligning (T0547)G192 (1unnC)T298 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLHSAGV 1unnC 291 :KFDDFQQ T0547 193 :I 1unnC 299 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=89562 # 1hqz1.185.35 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)G192 (1hqz1)Y43 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RLHSAGV 1hqz1 36 :SPNAKKE T0547 193 :I 1hqz1 44 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=89564 # 1dabA.185.520 read from T0547.t06.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)A189 (1dabA)N525 because D (zeta) conformation "forbidden" or filtered. T0547 185 :RLHS 1dabA 521 :RLAA T0547 190 :GVGI 1dabA 526 :GNGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=89566 # 1hs6A.185.105 read from T0547.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0547)V191 (1hs6A)K111 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1hs6A)S112 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RLHSAG 1hs6A 105 :SFETSP T0547 193 :I 1hs6A 113 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=89568 # 2b8nA.185.198 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)V191 (2b8nA)D193 because L (left) conformation "forbidden" or filtered. T0547 185 :RLHSAG 2b8nA 187 :LSDVLG T0547 192 :GI 2b8nA 194 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89570 # 2c27A.185.67 read from T0547.t06.many.frag # found chain 2c27A in template set Warning: unaligning (T0547)G192 (2c27A)G75 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RLHSAGV 2c27A 68 :SPPRGAG T0547 193 :I 2c27A 76 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=89572 # 1pg6A.185.95 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)G190 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 185 :RLHSA 1pg6A 89 :APNTP T0547 191 :VGI 1pg6A 95 :QIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=89574 # 1gmuA.185.32 read from T0547.t06.many.frag # found chain 1gmuA in training set T0547 185 :RLHSAGVGI 1gmuA 33 :TLNDGRDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=89575 # 1xi1A.185.105 read from T0547.t06.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)H187 (1xi1A)G108 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1xi1A)K110 because D (zeta) conformation "forbidden" or filtered. T0547 185 :RL 1xi1A 106 :CL T0547 188 :S 1xi1A 109 :Y T0547 190 :GVGI 1xi1A 111 :GKRK Number of specific fragments extracted= 3 number of extra gaps= 2 total=89578 # 1n35A.185.663 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)A189 (1n35A)S668 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1n35A)P669 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1n35A)G670 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1n35A)N671 because N (gamma') conformation "forbidden" or filtered. T0547 185 :RLHS 1n35A 664 :NDSF T0547 193 :I 1n35A 672 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=89580 # 1oygA.185.237 read from T0547.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0547)V191 (1oygA)G270 because L (left) conformation "forbidden" or filtered. T0547 185 :RLHSAG 1oygA 264 :NTGTED T0547 192 :GI 1oygA 271 :YQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=89582 # 1twdA.185.93 read from T0547.t06.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)G192 (1twdA)V101 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RLHSAGV 1twdA 94 :VLDVDGN T0547 193 :I 1twdA 102 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=89584 # 1knyA.185.55 read from T0547.t06.many.frag # found chain 1knyA in template set Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1knyA)T59 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1knyA)T59 Warning: unaligning (T0547)G192 (1knyA)E63 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (1knyA)F64 because Y (epsilon') conformation "forbidden" or filtered. T0547 185 :RL 1knyA 56 :VM T0547 189 :AGV 1knyA 60 :EEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=89586 # 1wn5A.185.33 read from T0547.t06.many.frag # found chain 1wn5A in training set Warning: unaligning (T0547)G190 (1wn5A)R39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1wn5A)F41 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLHSA 1wn5A 34 :LSSDG T0547 191 :V 1wn5A 40 :I T0547 193 :I 1wn5A 42 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=89589 # 1vsrA.185.42 read from T0547.t06.many.frag # found chain 1vsrA in training set T0547 185 :RLHSAGVGI 1vsrA 63 :THGCFWHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=89590 # 1xubA.185.70 read from T0547.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0547)A189 (1xubA)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1xubA)A58 because Y (epsilon') conformation "forbidden" or filtered. T0547 185 :RLHS 1xubA 51 :KPRN T0547 190 :GV 1xubA 56 :GD T0547 193 :I 1xubA 59 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=89593 # 1nofA.185.52 read from T0547.t06.many.frag # found chain 1nofA in training set Warning: unaligning (T0547)R185 (1nofA)R83 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :LHSAGVGI 1nofA 84 :IDPDSSKW Number of specific fragments extracted= 1 number of extra gaps= 1 total=89594 # 2bduA.185.190 read from T0547.t06.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)V191 (2bduA)N197 because G (3-10) conformation "forbidden" or filtered. T0547 185 :RLHSAG 2bduA 191 :FMDFDE T0547 192 :GI 2bduA 198 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=89596 # 1wv8A.185.8 read from T0547.t06.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)V191 (1wv8A)G15 because L (left) conformation "forbidden" or filtered. T0547 185 :RLHSAG 1wv8A 9 :LWDGEA T0547 192 :GI 1wv8A 16 :VW Number of specific fragments extracted= 2 number of extra gaps= 1 total=89598 # 1h7sA.185.204 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)H187 (1h7sA)G207 because S (epsilon) conformation "forbidden" or filtered. T0547 185 :RL 1h7sA 205 :QL T0547 188 :SAGVGI 1h7sA 208 :QGKRQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=89600 # 2c36A.185.159 read from T0547.t06.many.frag # found chain 2c36A in template set Warning: unaligning (T0547)G192 (2c36A)C189 because P (beta_P) conformation "forbidden" or filtered. T0547 185 :RLHSAGV 2c36A 182 :EHRAKGS T0547 193 :I 2c36A 190 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=89602 # 1txvA.185.132 read from T0547.t06.many.frag # found chain 1txvA in template set Warning: unaligning (T0547)G192 (1txvA)R140 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLHSAGV 1txvA 133 :AQPESGR T0547 193 :I 1txvA 141 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=89604 # 1ykdA.185.50 read from T0547.t06.many.frag # found chain 1ykdA in template set Warning: unaligning (T0547)G190 (1ykdA)K113 because G (3-10) conformation "forbidden" or filtered. T0547 185 :RLHSA 1ykdA 108 :LLDEE T0547 191 :VGI 1ykdA 114 :QEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89606 # 1kv7A.185.64 read from T0547.t06.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)G192 (1kv7A)L100 because E (beta_S) conformation "forbidden" or filtered. T0547 185 :RLHSAGV 1kv7A 93 :QLTEETT T0547 193 :I 1kv7A 101 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=89608 # 1mpgA.186.51 read from T0547.t06.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)H187 (1mpgA)D53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1mpgA)R56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1mpgA)T58 because E (beta_S) conformation "forbidden" or filtered. T0547 186 :L 1mpgA 52 :P T0547 188 :SA 1mpgA 54 :IA T0547 191 :V 1mpgA 57 :H T0547 193 :IW 1mpgA 59 :LH Number of specific fragments extracted= 4 number of extra gaps= 3 total=89612 # 1o12A.186.165 read from T0547.t06.many.frag # found chain 1o12A in template set T0547 186 :LHSAGVGIW 1o12A 154 :PEIESSELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=89613 # 2b0tA.186.199 read from T0547.t06.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)G190 (2b0tA)T204 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :LHSA 2b0tA 200 :AADG T0547 191 :VGIW 2b0tA 205 :ETIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89615 # 1c93A.186.44 read from T0547.t06.many.frag # found chain 1c93A in template set T0547 186 :LHSAGVGIW 1c93A 50 :YDTGTKTAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=89616 # 1lfdA.186.9 read from T0547.t06.many.frag # found chain 1lfdA in template set Warning: unaligning (T0547)G190 (1lfdA)N27 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1lfdA)Y31 because Y (epsilon') conformation "forbidden" or filtered. T0547 186 :LHSA 1lfdA 23 :LDVD T0547 191 :VGI 1lfdA 28 :GNM Number of specific fragments extracted= 2 number of extra gaps= 2 total=89618 # 1io1A.186.95 read from T0547.t06.many.frag # found chain 1io1A in template set Warning: unaligning (T0547)A189 (1io1A)D151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1io1A)T154 because E (beta_S) conformation "forbidden" or filtered. T0547 186 :LHS 1io1A 148 :GAN T0547 190 :GV 1io1A 152 :GE T0547 193 :IW 1io1A 155 :ID Number of specific fragments extracted= 3 number of extra gaps= 2 total=89621 # 1hqz1.186.36 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)H187 (1hqz1)N38 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :L 1hqz1 37 :P T0547 188 :SAGVGIW 1hqz1 39 :AKKEYEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=89623 # 1dabA.186.521 read from T0547.t06.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)A189 (1dabA)N525 because D (zeta) conformation "forbidden" or filtered. T0547 186 :LHS 1dabA 522 :LAA T0547 190 :GVGIW 1dabA 526 :GNGQW Number of specific fragments extracted= 2 number of extra gaps= 1 total=89625 # 1hs6A.186.106 read from T0547.t06.many.frag # found chain 1hs6A in template set T0547 186 :LHSAGVGIW 1hs6A 106 :FETSPKSSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=89626 # 1pg6A.186.96 read from T0547.t06.many.frag # found chain 1pg6A in training set T0547 186 :LHSAGVGIW 1pg6A 90 :PNTPGQIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=89627 # 1unnC.186.55 read from T0547.t06.many.frag # found chain 1unnC in template set Warning: unaligning (T0547)A189 (1unnC)F295 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE in next template residue (1unnC)E301 T0547 186 :LHS 1unnC 292 :FDD T0547 190 :GVGI 1unnC 296 :QQTT Number of specific fragments extracted= 2 number of extra gaps= 2 total=89629 # 2c27A.186.68 read from T0547.t06.many.frag # found chain 2c27A in template set T0547 186 :LHSAGVGIW 2c27A 69 :PPRGAGGAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=89630 # 1n35A.186.664 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)W194 (1n35A)F673 because Y (epsilon') conformation "forbidden" or filtered. T0547 186 :LHSAGVGI 1n35A 665 :DSFSPGND Number of specific fragments extracted= 1 number of extra gaps= 1 total=89631 # 2b8nA.186.199 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)G192 (2b8nA)R194 because N (gamma') conformation "forbidden" or filtered. T0547 186 :LHSAGV 2b8nA 188 :SDVLGD T0547 193 :IW 2b8nA 195 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=89633 # 1gmuA.186.33 read from T0547.t06.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)A189 (1gmuA)G37 because T (delta_L) conformation "forbidden" or filtered. T0547 186 :LHS 1gmuA 34 :LND T0547 190 :GVGIW 1gmuA 38 :RDAGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89635 # 1xubA.186.71 read from T0547.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0547)A189 (1xubA)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1xubA)A58 because Y (epsilon') conformation "forbidden" or filtered. T0547 186 :LHS 1xubA 52 :PRN T0547 190 :GV 1xubA 56 :GD T0547 193 :IW 1xubA 59 :LI Number of specific fragments extracted= 3 number of extra gaps= 2 total=89638 # 1o97D.186.120 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)V191 (1o97D)D126 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1o97D)E127 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :LHSAG 1o97D 121 :VEYQG T0547 193 :IW 1o97D 128 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=89640 # 1h7sA.186.205 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G192 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :LHSAGV 1h7sA 206 :LGQGKR T0547 193 :IW 1h7sA 213 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=89642 # 1knwA.186.144 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A189 (1knwA)G148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1knwA)H149 because E (beta_S) conformation "forbidden" or filtered. T0547 186 :LHS 1knwA 145 :PGF T0547 191 :VGIW 1knwA 150 :GHSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=89644 # 1xi1A.186.106 read from T0547.t06.many.frag # found chain 1xi1A in template set Warning: unaligning (T0547)A189 (1xi1A)K110 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1xi1A)R113 because E (beta_S) conformation "forbidden" or filtered. T0547 186 :LHS 1xi1A 107 :LGY T0547 190 :GV 1xi1A 111 :GK T0547 193 :IW 1xi1A 114 :KI Number of specific fragments extracted= 3 number of extra gaps= 2 total=89647 # 1wv8A.186.9 read from T0547.t06.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)G190 (1wv8A)A14 because G (3-10) conformation "forbidden" or filtered. T0547 186 :LHSA 1wv8A 10 :WDGE T0547 191 :VGIW 1wv8A 15 :GVWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=89649 # 1fy7A.186.122 read from T0547.t06.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)L186 (1fy7A)D280 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1fy7A)G283 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1fy7A)L286 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1fy7A)G288 because Y (epsilon') conformation "forbidden" or filtered. T0547 187 :HS 1fy7A 281 :EL T0547 190 :GV 1fy7A 284 :HH T0547 193 :I 1fy7A 287 :V Number of specific fragments extracted= 3 number of extra gaps= 4 total=89652 # 2bduA.186.191 read from T0547.t06.many.frag # found chain 2bduA in template set T0547 186 :LHSAGVGIW 2bduA 192 :MDFDENGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=89653 # 1xmtA.186.29 read from T0547.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)S188 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. T0547 186 :LH 1xmtA 30 :MR T0547 190 :GVGIW 1xmtA 34 :GKVMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=89655 # 1vsrA.186.43 read from T0547.t06.many.frag # found chain 1vsrA in training set T0547 186 :LHSAGVGIW 1vsrA 64 :HGCFWHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=89656 # 1twdA.186.94 read from T0547.t06.many.frag # found chain 1twdA in training set T0547 186 :LHSAGVGIW 1twdA 95 :LDVDGNVDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=89657 # 1knyA.186.56 read from T0547.t06.many.frag # found chain 1knyA in template set Warning: unaligning (T0547)H187 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1knyA)T59 Warning: unaligning (T0547)S188 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1knyA)T59 T0547 186 :L 1knyA 57 :M T0547 189 :AGVGIW 1knyA 60 :EEAEFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=89659 # 1ib2A.186.276 read from T0547.t06.many.frag # found chain 1ib2A in template set T0547 186 :LHSAGVGIW 1ib2A 1104 :MNDGPHSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=89660 # 1kv7A.186.65 read from T0547.t06.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)H187 (1kv7A)T95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1kv7A)T98 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1kv7A)L100 because E (beta_S) conformation "forbidden" or filtered. T0547 186 :L 1kv7A 94 :L T0547 188 :SA 1kv7A 96 :EE T0547 191 :V 1kv7A 99 :T T0547 193 :IW 1kv7A 101 :HW Number of specific fragments extracted= 4 number of extra gaps= 3 total=89664 # 1b8oA.186.121 read from T0547.t06.many.frag # found chain 1b8oA in training set Warning: unaligning (T0547)A189 (1b8oA)E125 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1b8oA)V126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1b8oA)G127 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1b8oA)D128 because P (beta_P) conformation "forbidden" or filtered. T0547 186 :LHS 1b8oA 122 :PNF T0547 193 :IW 1b8oA 129 :IM Number of specific fragments extracted= 2 number of extra gaps= 1 total=89666 # 1mpgA.187.52 read from T0547.t06.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)V191 (1mpgA)H57 because L (left) conformation "forbidden" or filtered. T0547 187 :HSAG 1mpgA 53 :DIAR T0547 192 :GIWA 1mpgA 58 :TLHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=89668 # 1io1A.187.96 read from T0547.t06.many.frag # found chain 1io1A in template set T0547 187 :HSAGVGIWA 1io1A 149 :ANDGETIDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=89669 # 2b0tA.187.200 read from T0547.t06.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)A189 (2b0tA)G203 because T (delta_L) conformation "forbidden" or filtered. T0547 187 :HS 2b0tA 201 :AD T0547 190 :GVGIWA 2b0tA 204 :TETILK Number of specific fragments extracted= 2 number of extra gaps= 1 total=89671 # 1c93A.187.45 read from T0547.t06.many.frag # found chain 1c93A in template set Warning: unaligning (T0547)G190 (1c93A)T54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1c93A)T56 because E (beta_S) conformation "forbidden" or filtered. T0547 187 :HSA 1c93A 51 :DTG T0547 191 :V 1c93A 55 :K T0547 193 :IWA 1c93A 57 :AYL Number of specific fragments extracted= 3 number of extra gaps= 2 total=89674 # 1o12A.187.166 read from T0547.t06.many.frag # found chain 1o12A in template set T0547 187 :HSAGVGIWA 1o12A 155 :EIESSELLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=89675 # 1fy7A.187.123 read from T0547.t06.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)A189 (1fy7A)G283 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (1fy7A)V287 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1fy7A)G288 because Y (epsilon') conformation "forbidden" or filtered. T0547 187 :HS 1fy7A 281 :EL T0547 190 :GVG 1fy7A 284 :HHL T0547 195 :A 1fy7A 289 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=89678 # 1hs6A.187.107 read from T0547.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0547)V191 (1hs6A)K111 because G (3-10) conformation "forbidden" or filtered. T0547 187 :HSAG 1hs6A 107 :ETSP T0547 192 :GIWA 1hs6A 112 :SSAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89680 # 1hqz1.187.37 read from T0547.t06.many.frag # found chain 1hqz1 in template set T0547 187 :HSAGVGIWA 1hqz1 38 :NAKKEYEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=89681 # 1dabA.187.522 read from T0547.t06.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)A189 (1dabA)N525 because D (zeta) conformation "forbidden" or filtered. T0547 187 :HS 1dabA 523 :AA T0547 190 :GVGIWA 1dabA 526 :GNGQWS Number of specific fragments extracted= 2 number of extra gaps= 1 total=89683 # 2c27A.187.69 read from T0547.t06.many.frag # found chain 2c27A in template set Warning: unaligning (T0547)H187 (2c27A)P70 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A189 (2c27A)G72 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2c27A)A73 because G (3-10) conformation "forbidden" or filtered. T0547 188 :S 2c27A 71 :R T0547 191 :VGIWA 2c27A 74 :GGAMA Number of specific fragments extracted= 2 number of extra gaps= 2 total=89685 # 1n35A.187.665 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)A189 (1n35A)S668 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1n35A)P669 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1n35A)N671 because N (gamma') conformation "forbidden" or filtered. T0547 187 :HS 1n35A 666 :SF T0547 191 :V 1n35A 670 :G T0547 193 :IWA 1n35A 672 :DFT Number of specific fragments extracted= 3 number of extra gaps= 2 total=89688 # 1lfdA.187.10 read from T0547.t06.many.frag # found chain 1lfdA in template set Warning: unaligning (T0547)A189 (1lfdA)D26 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1lfdA)G28 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1lfdA)Y31 because Y (epsilon') conformation "forbidden" or filtered. T0547 187 :HS 1lfdA 24 :DV T0547 190 :G 1lfdA 27 :N T0547 192 :GI 1lfdA 29 :NM T0547 195 :A 1lfdA 32 :K Number of specific fragments extracted= 4 number of extra gaps= 3 total=89692 # 1l8aA.187.429 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)W194 (1l8aA)P437 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSAGVGI 1l8aA 430 :DADIEKL T0547 195 :A 1l8aA 438 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=89694 # 1pg6A.187.97 read from T0547.t06.many.frag # found chain 1pg6A in training set T0547 187 :HSAGVGIWA 1pg6A 91 :NTPGQIVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=89695 # 1gmuA.187.34 read from T0547.t06.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)G192 (1gmuA)A40 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1gmuA)L43 because D (zeta) conformation "forbidden" or filtered. T0547 187 :HSAGV 1gmuA 35 :NDGRD T0547 193 :IW 1gmuA 41 :GL Number of specific fragments extracted= 2 number of extra gaps= 2 total=89697 # 1td6A.187.129 read from T0547.t06.many.frag # found chain 1td6A in template set Warning: unaligning (T0547)G190 (1td6A)N121 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSA 1td6A 118 :DYP T0547 191 :VGIWA 1td6A 122 :KLNMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=89699 # 1o97D.187.121 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)A189 (1o97D)Q124 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1o97D)G125 because S (epsilon) conformation "forbidden" or filtered. T0547 187 :HS 1o97D 122 :EY T0547 191 :VGIWA 1o97D 126 :DELVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=89701 # 1xubA.187.72 read from T0547.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0547)S188 (1xubA)N54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1xubA)A58 because Y (epsilon') conformation "forbidden" or filtered. T0547 187 :H 1xubA 53 :R T0547 189 :AGV 1xubA 55 :GGD T0547 193 :IWA 1xubA 59 :LIR Number of specific fragments extracted= 3 number of extra gaps= 2 total=89704 # 1wv8A.187.10 read from T0547.t06.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)G190 (1wv8A)A14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1wv8A)G15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1wv8A)A19 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSA 1wv8A 11 :DGE T0547 192 :GIW 1wv8A 16 :VWV Number of specific fragments extracted= 2 number of extra gaps= 2 total=89706 # 1h7sA.187.206 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)H187 (1h7sA)G207 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1h7sA)K210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SA 1h7sA 208 :QG T0547 191 :V 1h7sA 211 :R T0547 193 :IW 1h7sA 213 :PV Number of specific fragments extracted= 3 number of extra gaps= 4 total=89709 # 1xmtA.187.30 read from T0547.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)A189 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1xmtA)K35 because G (3-10) conformation "forbidden" or filtered. T0547 187 :HS 1xmtA 31 :RN T0547 190 :G 1xmtA 34 :G T0547 192 :GIWA 1xmtA 36 :VMDL Number of specific fragments extracted= 3 number of extra gaps= 2 total=89712 # 1ib2A.187.277 read from T0547.t06.many.frag # found chain 1ib2A in template set Warning: unaligning (T0547)S188 (1ib2A)D1106 because D (zeta) conformation "forbidden" or filtered. T0547 187 :H 1ib2A 1105 :N T0547 189 :AGVGIWA 1ib2A 1107 :GPHSALY Number of specific fragments extracted= 2 number of extra gaps= 1 total=89714 # 2bduA.187.192 read from T0547.t06.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)A189 (2bduA)D195 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HS 2bduA 193 :DF T0547 190 :GVGIWA 2bduA 196 :ENGVLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=89716 # 1vqoB.187.89 read from T0547.t06.many.frag # found chain 1vqoB in template set Warning: unaligning (T0547)V191 (1vqoB)G93 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1vqoB)Q94 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSAG 1vqoB 89 :DTPY T0547 193 :IWA 1vqoB 95 :RPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89718 # 1bvoA.187.62 read from T0547.t06.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)G192 (1bvoA)P115 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSAGV 1bvoA 110 :GPEHK T0547 193 :IWA 1bvoA 116 :HPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=89720 # 1q3iA.187.112 read from T0547.t06.many.frag # found chain 1q3iA in template set T0547 187 :HSAGVGIWA 1q3iA 490 :DNPQSHVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=89721 # 1h4gA.187.20 read from T0547.t06.many.frag # found chain 1h4gA in training set Warning: unaligning (T0547)A189 (1h4gA)G23 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1h4gA)G24 because S (epsilon) conformation "forbidden" or filtered. T0547 187 :HS 1h4gA 21 :DS T0547 191 :VGIWA 1h4gA 25 :SGTMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=89723 # 2b8nA.187.200 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)V191 (2b8nA)D193 because L (left) conformation "forbidden" or filtered. T0547 187 :HSAG 2b8nA 189 :DVLG T0547 192 :GIWA 2b8nA 194 :RLDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=89725 # 1kv7A.187.66 read from T0547.t06.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)A195 (1kv7A)H103 because P (beta_P) conformation "forbidden" or filtered. T0547 187 :HSAGVGIW 1kv7A 95 :TEETTLHW Number of specific fragments extracted= 1 number of extra gaps= 1 total=89726 # 1unnC.187.56 read from T0547.t06.many.frag # found chain 1unnC in template set Warning: unaligning (T0547)G190 (1unnC)Q296 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1unnC)T298 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE in next template residue (1unnC)E301 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE at template residue (1unnC)E301 T0547 187 :HSA 1unnC 293 :DDF T0547 191 :V 1unnC 297 :Q T0547 193 :I 1unnC 299 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=89729 # 1mpgA.188.53 read from T0547.t06.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)G190 (1mpgA)R56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1mpgA)H57 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1mpgA)H60 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SA 1mpgA 54 :IA T0547 192 :GI 1mpgA 58 :TL T0547 195 :AK 1mpgA 61 :IN Number of specific fragments extracted= 3 number of extra gaps= 2 total=89732 # 1io1A.188.97 read from T0547.t06.many.frag # found chain 1io1A in template set T0547 188 :SAGVGIWAK 1io1A 150 :NDGETIDID Number of specific fragments extracted= 1 number of extra gaps= 0 total=89733 # 1hs6A.188.108 read from T0547.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0547)V191 (1hs6A)K111 because G (3-10) conformation "forbidden" or filtered. T0547 188 :SAG 1hs6A 108 :TSP T0547 192 :GIWAK 1hs6A 112 :SSALQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=89735 # 1fy7A.188.124 read from T0547.t06.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)S188 (1fy7A)L282 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1fy7A)H284 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1fy7A)L286 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1fy7A)G288 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1fy7A)Y289 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :A 1fy7A 283 :G T0547 191 :V 1fy7A 285 :H T0547 193 :I 1fy7A 287 :V T0547 196 :K 1fy7A 290 :F Number of specific fragments extracted= 4 number of extra gaps= 4 total=89739 # 2b0tA.188.201 read from T0547.t06.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)G190 (2b0tA)T204 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SA 2b0tA 202 :DG T0547 191 :VGIWAK 2b0tA 205 :ETILKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=89741 # 1hqz1.188.38 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)K196 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SAGVGIWA 1hqz1 39 :AKKEYEPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=89742 # 1dabA.188.523 read from T0547.t06.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)A189 (1dabA)N525 because D (zeta) conformation "forbidden" or filtered. T0547 188 :S 1dabA 524 :A T0547 190 :GVGIWAK 1dabA 526 :GNGQWSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89744 # 1o12A.188.167 read from T0547.t06.many.frag # found chain 1o12A in template set T0547 188 :SAGVGIWAK 1o12A 156 :IESSELLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=89745 # 2c27A.188.70 read from T0547.t06.many.frag # found chain 2c27A in template set Warning: unaligning (T0547)A189 (2c27A)G72 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2c27A)A73 because G (3-10) conformation "forbidden" or filtered. T0547 188 :S 2c27A 71 :R T0547 191 :VGIWAK 2c27A 74 :GGAMAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=89747 # 1n35A.188.666 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)A189 (1n35A)S668 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1n35A)G670 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1n35A)N671 because N (gamma') conformation "forbidden" or filtered. T0547 188 :S 1n35A 667 :F T0547 190 :G 1n35A 669 :P T0547 193 :IWAK 1n35A 672 :DFTH Number of specific fragments extracted= 3 number of extra gaps= 2 total=89750 # 1c93A.188.46 read from T0547.t06.many.frag # found chain 1c93A in template set Warning: unaligning (T0547)G190 (1c93A)T54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1c93A)K55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1c93A)H60 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :SA 1c93A 52 :TG T0547 192 :GIWA 1c93A 56 :TAYL Number of specific fragments extracted= 2 number of extra gaps= 2 total=89752 # 1pg6A.188.98 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)G192 (1pg6A)I96 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :SAGV 1pg6A 92 :TPGQ T0547 193 :IWAK 1pg6A 97 :VALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=89754 # 1l8aA.188.430 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)G192 (1l8aA)K435 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1l8aA)I439 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SAGV 1l8aA 431 :ADIE T0547 193 :IWA 1l8aA 436 :LPY Number of specific fragments extracted= 2 number of extra gaps= 2 total=89756 # 1bvoA.188.63 read from T0547.t06.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)G190 (1bvoA)H113 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SA 1bvoA 111 :PE T0547 191 :VGIWAK 1bvoA 114 :KPHPHN Number of specific fragments extracted= 2 number of extra gaps= 1 total=89758 # 1xubA.188.73 read from T0547.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0547)A189 (1xubA)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1xubA)A58 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :S 1xubA 54 :N T0547 190 :GV 1xubA 56 :GD T0547 193 :IWAK 1xubA 59 :LIRI Number of specific fragments extracted= 3 number of extra gaps= 2 total=89761 # 2bduA.188.193 read from T0547.t06.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)V191 (2bduA)N197 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (2bduA)G202 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SAG 2bduA 194 :FDE T0547 192 :GIWA 2bduA 198 :GVLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=89763 # 1gmuA.188.35 read from T0547.t06.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)A189 (1gmuA)G37 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1gmuA)R38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1gmuA)L44 because E (beta_S) conformation "forbidden" or filtered. T0547 188 :S 1gmuA 36 :D T0547 191 :VGIWA 1gmuA 39 :DAGLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=89765 # 1o97D.188.122 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)A189 (1o97D)Q124 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1o97D)G125 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1o97D)D126 because G (3-10) conformation "forbidden" or filtered. T0547 188 :S 1o97D 123 :Y T0547 192 :GIWAK 1o97D 127 :ELVAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=89767 # 1vqoB.188.90 read from T0547.t06.many.frag # found chain 1vqoB in template set T0547 188 :SAGVGIWAK 1vqoB 90 :TPYGQRPLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=89768 # 1td6A.188.130 read from T0547.t06.many.frag # found chain 1td6A in template set T0547 188 :SAGVGIWAK 1td6A 119 :YPNKLNMIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=89769 # 1ib2A.188.278 read from T0547.t06.many.frag # found chain 1ib2A in template set T0547 188 :SAGVGIWAK 1ib2A 1106 :DGPHSALYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=89770 # 1xubA.188.32 read from T0547.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0547)G192 (1xubA)G17 because S (epsilon) conformation "forbidden" or filtered. T0547 188 :SAGV 1xubA 13 :VPLE T0547 193 :IWAK 1xubA 18 :NPVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=89772 # 1h7sA.188.207 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G192 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SAGV 1h7sA 208 :QGKR T0547 193 :IWAK 1h7sA 213 :PVVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=89774 # 1wv8A.188.11 read from T0547.t06.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)G190 (1wv8A)A14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1wv8A)G15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1wv8A)V16 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SA 1wv8A 12 :GE T0547 193 :IWAK 1wv8A 17 :WVAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=89776 # 2ae0X.188.113 read from T0547.t06.many.frag # found chain 2ae0X in template set T0547 188 :SAGVGIWAK 2ae0X 114 :GEFQYPIYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=89777 # 1o59A.188.88 read from T0547.t06.many.frag # found chain 1o59A in template set Warning: unaligning (T0547)W194 (1o59A)W83 because Y (epsilon') conformation "forbidden" or filtered. T0547 188 :SAGVGI 1o59A 77 :NEMEYD T0547 195 :AK 1o59A 84 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=89779 1eaiC expands to /projects/compbio/data/pdb/1eai.pdb.gz 1eaiC:# 1eaiC.188.4 read from T0547.t06.many.frag # adding 1eaiC to template set # found chain 1eaiC in template set Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE in next template residue (1eaiC)N8 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE at template residue (1eaiC)N8 Warning: unaligning (T0547)G192 (1eaiC)E9 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :SA 1eaiC 5 :CG T0547 193 :IWAK 1eaiC 10 :VWTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=89781 # 1lfdA.188.11 read from T0547.t06.many.frag # found chain 1lfdA in template set Warning: unaligning (T0547)A189 (1lfdA)D26 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1lfdA)N27 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1lfdA)G28 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1lfdA)K32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1lfdA)S33 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :S 1lfdA 25 :V T0547 192 :GIW 1lfdA 29 :NMY Number of specific fragments extracted= 2 number of extra gaps= 2 total=89783 # 1xdpA.188.598 read from T0547.t06.many.frag # found chain 1xdpA in template set T0547 188 :SAGVGIWAK 1xdpA 600 :NGGDKKVYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=89784 # 2bh1A.188.12 read from T0547.t06.many.frag # found chain 2bh1A in template set Warning: unaligning (T0547)A189 (2bh1A)E14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2bh1A)A15 because P (beta_P) conformation "forbidden" or filtered. T0547 188 :S 2bh1A 13 :K T0547 191 :VGIWAK 2bh1A 16 :DIPWLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=89786 # 1hs6A.189.109 read from T0547.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0547)K196 (1hs6A)Q116 because E (beta_S) conformation "forbidden" or filtered. T0547 189 :AGVGIWA 1hs6A 109 :SPKSSAL T0547 197 :S 1hs6A 117 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=89788 # 1fy7A.189.125 read from T0547.t06.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)A189 (1fy7A)G283 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1fy7A)H284 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1fy7A)L286 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1fy7A)Y289 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1fy7A)F290 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :V 1fy7A 285 :H T0547 193 :IW 1fy7A 287 :VG T0547 197 :S 1fy7A 291 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=89791 # 1mpgA.189.54 read from T0547.t06.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)G190 (1mpgA)R56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1mpgA)T58 because E (beta_S) conformation "forbidden" or filtered. T0547 189 :A 1mpgA 55 :A T0547 191 :V 1mpgA 57 :H T0547 193 :IWAKS 1mpgA 59 :LHINL Number of specific fragments extracted= 3 number of extra gaps= 2 total=89794 # 1dabA.189.524 read from T0547.t06.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)A189 (1dabA)N525 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1dabA)L532 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1dabA)G534 T0547 190 :GVGIWA 1dabA 526 :GNGQWS Number of specific fragments extracted= 1 number of extra gaps= 2 total=89795 # 1io1A.189.98 read from T0547.t06.many.frag # found chain 1io1A in template set Warning: unaligning (T0547)A189 (1io1A)D151 because P (beta_P) conformation "forbidden" or filtered. T0547 190 :GVGIWAKS 1io1A 152 :GETIDIDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=89796 # 1bvoA.189.64 read from T0547.t06.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)G190 (1bvoA)H113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1bvoA)P115 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :A 1bvoA 112 :E T0547 191 :V 1bvoA 114 :K T0547 193 :IWAKS 1bvoA 116 :HPHNL Number of specific fragments extracted= 3 number of extra gaps= 2 total=89799 # 1hqz1.189.39 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)K196 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :AGVGIWA 1hqz1 40 :KKEYEPE T0547 197 :S 1hqz1 48 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=89801 # 1pg6A.189.99 read from T0547.t06.many.frag # found chain 1pg6A in training set T0547 189 :AGVGIWAKS 1pg6A 93 :PGQIVALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=89802 # 2c27A.189.71 read from T0547.t06.many.frag # found chain 2c27A in template set Warning: unaligning (T0547)A189 (2c27A)G72 because S (epsilon) conformation "forbidden" or filtered. T0547 190 :GVGIWAKS 2c27A 73 :AGGAMAEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=89803 # 2bduA.189.194 read from T0547.t06.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)K196 (2bduA)G202 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :AGVGIWA 2bduA 195 :DENGVLK T0547 197 :S 2bduA 203 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=89805 # 2ae0X.189.114 read from T0547.t06.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)G192 (2ae0X)Y118 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (2ae0X)R122 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :AGV 2ae0X 115 :EFQ T0547 193 :IWA 2ae0X 119 :PIY T0547 197 :S 2ae0X 123 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=89808 # 2b0tA.189.202 read from T0547.t06.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)A189 (2b0tA)G203 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2b0tA)T204 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWAKS 2b0tA 205 :ETILKDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=89809 # 1o97D.189.123 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)V191 (1o97D)D126 because G (3-10) conformation "forbidden" or filtered. T0547 189 :AG 1o97D 124 :QG T0547 192 :GIWAKS 1o97D 127 :ELVATR Number of specific fragments extracted= 2 number of extra gaps= 1 total=89811 # 1o59A.189.89 read from T0547.t06.many.frag # found chain 1o59A in template set Warning: unaligning (T0547)G190 (1o59A)M79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1o59A)Y81 because E (beta_S) conformation "forbidden" or filtered. T0547 189 :A 1o59A 78 :E T0547 191 :V 1o59A 80 :E T0547 193 :IWAKS 1o59A 82 :DWVII Number of specific fragments extracted= 3 number of extra gaps= 2 total=89814 # 1l8aA.189.431 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 189 :AGVGIWAKS 1l8aA 432 :DIEKLPYIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=89815 # 1eaiC.189.5 read from T0547.t06.many.frag # found chain 1eaiC in template set Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE in next template residue (1eaiC)N8 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE at template residue (1eaiC)N8 Warning: unaligning (T0547)G192 (1eaiC)E9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1eaiC)C14 because D (zeta) conformation "forbidden" or filtered. T0547 189 :A 1eaiC 6 :G T0547 193 :IWAK 1eaiC 10 :VWTE Number of specific fragments extracted= 2 number of extra gaps= 2 total=89817 # 2b61A.189.78 read from T0547.t06.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)A189 (2b61A)G60 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (2b61A)R61 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWAKS 2b61A 62 :DGWWQNF Number of specific fragments extracted= 1 number of extra gaps= 1 total=89818 # 1on3A.189.272 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)G190 (1on3A)P275 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1on3A)D281 because G (3-10) conformation "forbidden" or filtered. T0547 189 :A 1on3A 274 :S T0547 191 :VGIWA 1on3A 276 :NTELR T0547 197 :S 1on3A 282 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=89821 # 1n35A.189.667 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)A189 (1n35A)S668 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1n35A)P669 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (1n35A)G670 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1n35A)M676 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GIWAK 1n35A 671 :NDFTH Number of specific fragments extracted= 1 number of extra gaps= 2 total=89822 # 1gmuA.189.36 read from T0547.t06.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)A189 (1gmuA)G37 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1gmuA)R38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1gmuA)L43 because D (zeta) conformation "forbidden" or filtered. T0547 191 :VGIW 1gmuA 39 :DAGL T0547 196 :KS 1gmuA 44 :LP Number of specific fragments extracted= 2 number of extra gaps= 2 total=89824 # 1ib2A.189.279 read from T0547.t06.many.frag # found chain 1ib2A in template set Warning: unaligning (T0547)G192 (1ib2A)S1110 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :AGV 1ib2A 1107 :GPH T0547 193 :IWAKS 1ib2A 1111 :ALYTM Number of specific fragments extracted= 2 number of extra gaps= 1 total=89826 # 1o12A.189.168 read from T0547.t06.many.frag # found chain 1o12A in template set T0547 189 :AGVGIWAKS 1o12A 157 :ESSELLLRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=89827 # 1h7sA.189.208 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)A189 (1h7sA)G209 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G190 (1h7sA)K210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :V 1h7sA 211 :R T0547 193 :IW 1h7sA 213 :PV T0547 196 :KS 1h7sA 216 :CT Number of specific fragments extracted= 3 number of extra gaps= 3 total=89830 # 1xdpA.189.599 read from T0547.t06.many.frag # found chain 1xdpA in template set T0547 189 :AGVGIWAKS 1xdpA 601 :GGDKKVYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=89831 # 1extA.189.23 read from T0547.t06.many.frag # found chain 1extA in template set Warning: unaligning (T0547)V191 (1extA)G36 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1extA)T37 because E (beta_S) conformation "forbidden" or filtered. T0547 189 :AG 1extA 34 :HK T0547 193 :IWAKS 1extA 38 :YLYND Number of specific fragments extracted= 2 number of extra gaps= 1 total=89833 # 1td6A.189.131 read from T0547.t06.many.frag # found chain 1td6A in template set T0547 189 :AGVGIWAKS 1td6A 120 :PNKLNMIHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=89834 # 1xubA.189.33 read from T0547.t06.many.frag # found chain 1xubA in training set T0547 189 :AGVGIWAKS 1xubA 14 :PLEGNPVAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=89835 # 1vqoB.189.91 read from T0547.t06.many.frag # found chain 1vqoB in template set Warning: unaligning (T0547)G190 (1vqoB)Y92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1vqoB)T98 because Y (epsilon') conformation "forbidden" or filtered. T0547 189 :A 1vqoB 91 :P T0547 191 :VGIWA 1vqoB 93 :GQRPL T0547 197 :S 1vqoB 99 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=89838 # 1wleA.189.165 read from T0547.t06.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)G192 (1wleA)A169 because P (beta_P) conformation "forbidden" or filtered. T0547 189 :AGV 1wleA 166 :ESQ T0547 193 :IWAKS 1wleA 170 :RVLHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=89840 # 1xubA.189.74 read from T0547.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0547)A189 (1xubA)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1xubA)A58 because Y (epsilon') conformation "forbidden" or filtered. T0547 190 :GV 1xubA 56 :GD T0547 193 :IWAKS 1xubA 59 :LIRIF Number of specific fragments extracted= 2 number of extra gaps= 2 total=89842 # 1hs6A.190.110 read from T0547.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0547)G192 (1hs6A)S112 because P (beta_P) conformation "forbidden" or filtered. T0547 190 :GV 1hs6A 110 :PK T0547 193 :IWAKSG 1hs6A 113 :SALQWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=89844 # 1on3A.190.273 read from T0547.t06.many.frag # found chain 1on3A in template set T0547 190 :GVGIWAKSG 1on3A 275 :PNTELRDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=89845 # 1l8aA.190.432 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)G192 (1l8aA)K435 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1l8aA)P437 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1l8aA)Y438 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1l8aA)I439 because P (beta_P) conformation "forbidden" or filtered. T0547 190 :GV 1l8aA 433 :IE T0547 193 :I 1l8aA 436 :L T0547 197 :SG 1l8aA 440 :TF Number of specific fragments extracted= 3 number of extra gaps= 2 total=89848 # 1bvoA.190.65 read from T0547.t06.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)G190 (1bvoA)H113 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWAKSG 1bvoA 114 :KPHPHNLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=89849 # 2ae0X.190.115 read from T0547.t06.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)G190 (2ae0X)F116 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)V191 (2ae0X)Q117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (2ae0X)Y118 because D (zeta) conformation "forbidden" or filtered. T0547 193 :IWAKSG 2ae0X 119 :PIYRMP Number of specific fragments extracted= 1 number of extra gaps= 1 total=89850 # 1eaiC.190.6 read from T0547.t06.many.frag # found chain 1eaiC in template set Warning: unaligning (T0547)G190 because of BadResidue code BAD_PEPTIDE in next template residue (1eaiC)N8 Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE at template residue (1eaiC)N8 Warning: unaligning (T0547)G198 (1eaiC)T15 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GIWAKS 1eaiC 9 :EVWTEC Number of specific fragments extracted= 1 number of extra gaps= 2 total=89851 # 2b61A.190.79 read from T0547.t06.many.frag # found chain 2b61A in training set T0547 190 :GVGIWAKSG 2b61A 61 :RDGWWQNFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=89852 # 1fy7A.190.126 read from T0547.t06.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)G190 (1fy7A)H284 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G192 (1fy7A)L286 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1fy7A)G288 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :V 1fy7A 285 :H T0547 193 :I 1fy7A 287 :V T0547 195 :AKSG 1fy7A 289 :YFSK Number of specific fragments extracted= 3 number of extra gaps= 3 total=89855 # 1extA.190.24 read from T0547.t06.many.frag # found chain 1extA in template set Warning: unaligning (T0547)V191 (1extA)G36 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1extA)C43 because P (beta_P) conformation "forbidden" or filtered. T0547 190 :G 1extA 35 :K T0547 192 :GIWAKS 1extA 37 :TYLYND Number of specific fragments extracted= 2 number of extra gaps= 2 total=89857 # 1pg6A.190.100 read from T0547.t06.many.frag # found chain 1pg6A in training set T0547 190 :GVGIWAKSG 1pg6A 94 :GQIVALELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=89858 # 1hqz1.190.40 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)K196 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 190 :GVGIWA 1hqz1 41 :KEYEPE T0547 197 :SG 1hqz1 48 :TG Number of specific fragments extracted= 2 number of extra gaps= 1 total=89860 # 1h7sA.190.209 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0547 190 :GVGIW 1h7sA 210 :KRQPV T0547 196 :KSG 1h7sA 216 :CTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=89862 # 1dabA.190.525 read from T0547.t06.many.frag # found chain 1dabA in template set Warning: unaligning (T0547)S197 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1dabA)G534 Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1dabA)G534 T0547 190 :GVGIWAK 1dabA 526 :GNGQWSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=89863 # 1gmuA.190.37 read from T0547.t06.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)G190 (1gmuA)R38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1gmuA)R46 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWAKS 1gmuA 39 :DAGLLLP Number of specific fragments extracted= 1 number of extra gaps= 2 total=89864 # 1wleA.190.166 read from T0547.t06.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)K196 (1wleA)H173 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1wleA)V175 because E (beta_S) conformation "forbidden" or filtered. T0547 190 :GVGIWA 1wleA 167 :SQARVL T0547 197 :S 1wleA 174 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=89866 # 2b0tA.190.203 read from T0547.t06.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)G198 (2b0tA)L212 because D (zeta) conformation "forbidden" or filtered. T0547 190 :GVGIWAKS 2b0tA 204 :TETILKDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=89867 # 2bduA.190.195 read from T0547.t06.many.frag # found chain 2bduA in template set Warning: unaligning (T0547)K196 (2bduA)G202 because Y (epsilon') conformation "forbidden" or filtered. T0547 190 :GVGIWA 2bduA 196 :ENGVLK T0547 197 :SG 2bduA 203 :FK Number of specific fragments extracted= 2 number of extra gaps= 1 total=89869 # 1o97D.190.124 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)G192 (1o97D)E127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1o97D)R132 because Y (epsilon') conformation "forbidden" or filtered. T0547 190 :GV 1o97D 125 :GD T0547 193 :IWAK 1o97D 128 :LVAT T0547 198 :G 1o97D 133 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=89872 # 1td6A.190.132 read from T0547.t06.many.frag # found chain 1td6A in template set T0547 190 :GVGIWAKSG 1td6A 121 :NKLNMIHYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=89873 # 1t9hA.190.64 read from T0547.t06.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)G190 (1t9hA)K56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1t9hA)E62 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :VGIWA 1t9hA 57 :EGYLM T0547 197 :SG 1t9hA 63 :IK Number of specific fragments extracted= 2 number of extra gaps= 2 total=89875 # 1n35A.190.668 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)G192 (1n35A)N671 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1n35A)F673 because Y (epsilon') conformation "forbidden" or filtered. T0547 190 :GV 1n35A 669 :PG T0547 193 :I 1n35A 672 :D T0547 195 :AKSG 1n35A 674 :THMT Number of specific fragments extracted= 3 number of extra gaps= 2 total=89878 # 2c43A.190.135 read from T0547.t06.many.frag # found chain 2c43A in template set Warning: unaligning (T0547)G198 (2c43A)S144 because E (beta_S) conformation "forbidden" or filtered. T0547 190 :GVGIWAKS 2c43A 136 :VGIDIMKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=89879 # 2c27A.190.72 read from T0547.t06.many.frag # found chain 2c27A in template set Warning: unaligning (T0547)G192 (2c27A)G75 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (2c27A)V81 because E (beta_S) conformation "forbidden" or filtered. T0547 190 :GV 2c27A 73 :AG T0547 193 :IWAKS 2c27A 76 :AMAEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=89881 # 1xdpA.190.600 read from T0547.t06.many.frag # found chain 1xdpA in template set Warning: unaligning (T0547)G192 (1xdpA)K604 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1xdpA)S610 because G (3-10) conformation "forbidden" or filtered. T0547 190 :GV 1xdpA 602 :GD T0547 193 :IWAKS 1xdpA 605 :KVYLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=89883 # 1io1A.190.99 read from T0547.t06.many.frag # found chain 1io1A in template set Warning: unaligning (T0547)G192 (1io1A)T154 because E (beta_S) conformation "forbidden" or filtered. T0547 190 :GV 1io1A 152 :GE T0547 193 :IWAKSG 1io1A 155 :IDIDLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=89885 # 1fp3A.190.33 read from T0547.t06.many.frag # found chain 1fp3A in template set Warning: unaligning (T0547)G198 (1fp3A)L42 because E (beta_S) conformation "forbidden" or filtered. T0547 190 :GVGIWAKS 1fp3A 34 :EHGGFFTC Number of specific fragments extracted= 1 number of extra gaps= 1 total=89886 # 1m40A.190.26 read from T0547.t06.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)K196 (1m40A)E58 because Y (epsilon') conformation "forbidden" or filtered. T0547 190 :GVGIWA 1m40A 52 :NSGKIL T0547 197 :SG 1m40A 59 :SF Number of specific fragments extracted= 2 number of extra gaps= 1 total=89888 # 1xqwA.190.39 read from T0547.t06.many.frag # found chain 1xqwA in template set T0547 190 :GVGIWAKSG 1xqwA 40 :MSHDYLLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=89889 1wspA expands to /projects/compbio/data/pdb/1wsp.pdb.gz 1wspA:# 1wspA.190.54 read from T0547.t06.many.frag # adding 1wspA to template set # found chain 1wspA in template set Warning: unaligning (T0547)V191 (1wspA)G804 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1wspA)R811 because G (3-10) conformation "forbidden" or filtered. T0547 190 :G 1wspA 803 :C T0547 192 :GIWAKS 1wspA 805 :VVFEEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=89891 # 1mpgA.190.55 read from T0547.t06.many.frag # found chain 1mpgA in training set Warning: unaligning (T0547)G192 (1mpgA)T58 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1mpgA)H60 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1mpgA)S64 because P (beta_P) conformation "forbidden" or filtered. T0547 190 :GV 1mpgA 56 :RH T0547 193 :I 1mpgA 59 :L T0547 195 :AKS 1mpgA 61 :INL Number of specific fragments extracted= 3 number of extra gaps= 3 total=89894 # 1on3A.191.274 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)G199 (1on3A)P284 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWAKSG 1on3A 276 :NTELRDIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=89895 # 1l8aA.191.433 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)G192 (1l8aA)K435 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (1l8aA)L436 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1l8aA)I439 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 1l8aA 434 :E T0547 194 :WA 1l8aA 437 :PY T0547 197 :SGG 1l8aA 440 :TFP Number of specific fragments extracted= 3 number of extra gaps= 2 total=89898 # 2ae0X.191.116 read from T0547.t06.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)G192 (2ae0X)Y118 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (2ae0X)P124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (2ae0X)P125 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 2ae0X 117 :Q T0547 193 :IWAKS 2ae0X 119 :PIYRM Number of specific fragments extracted= 2 number of extra gaps= 2 total=89900 # 1hs6A.191.111 read from T0547.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0547)G199 (1hs6A)T119 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWAKSG 1hs6A 111 :KSSALQWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=89901 # 1extA.191.25 read from T0547.t06.many.frag # found chain 1extA in template set Warning: unaligning (T0547)V191 (1extA)G36 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1extA)C43 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GIWAKS 1extA 37 :TYLYND T0547 199 :G 1extA 44 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=89903 # 1bvoA.191.66 read from T0547.t06.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)G199 (1bvoA)G122 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :VGIWAKSG 1bvoA 114 :KPHPHNLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=89904 # 1eaiC.191.7 read from T0547.t06.many.frag # found chain 1eaiC in template set Warning: unaligning (T0547)V191 because of BadResidue code BAD_PEPTIDE at template residue (1eaiC)N8 Warning: unaligning (T0547)G192 (1eaiC)E9 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWAKSGG 1eaiC 10 :VWTECTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=89905 # 2b61A.191.80 read from T0547.t06.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)G192 (2b61A)G63 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 2b61A 62 :D T0547 193 :IWAKSGG 2b61A 64 :WWQNFMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=89907 # 1gmuA.191.38 read from T0547.t06.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)G192 (1gmuA)A40 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W194 (1gmuA)L42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1gmuA)L43 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1gmuA)R46 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 1gmuA 39 :D T0547 193 :I 1gmuA 41 :G T0547 196 :KS 1gmuA 44 :LP T0547 199 :G 1gmuA 47 :G Number of specific fragments extracted= 4 number of extra gaps= 3 total=89911 # 1h7sA.191.210 read from T0547.t06.many.frag # found chain 1h7sA in template set T0547 191 :VGIWAKSGG 1h7sA 211 :RQPVVCTGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=89912 # 1xmtA.191.35 read from T0547.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G198 (1xmtA)Y43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1xmtA)V44 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :VGIWAKS 1xmtA 36 :VMDLVHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=89913 # 1fy7A.191.127 read from T0547.t06.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)I193 (1fy7A)V287 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1fy7A)K292 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1fy7A)E293 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VG 1fy7A 285 :HL T0547 194 :WAKS 1fy7A 288 :GYFS Number of specific fragments extracted= 2 number of extra gaps= 2 total=89915 # 1n35A.191.306 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)G192 (1n35A)F308 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :V 1n35A 307 :K T0547 193 :IWAKSGG 1n35A 309 :MYMGVMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=89917 # 1lml.191.80 read from T0547.t06.many.frag # found chain 1lml in template set Warning: unaligning (T0547)G198 (1lml)V187 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :VGIWAKS 1lml 180 :KWKVTDM T0547 199 :G 1lml 188 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=89919 # 2c43A.191.136 read from T0547.t06.many.frag # found chain 2c43A in template set Warning: unaligning (T0547)S197 (2c43A)T143 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (2c43A)S144 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :VGIWAK 2c43A 137 :GIDIMK T0547 199 :G 2c43A 145 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=89921 # 1hqz1.191.41 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)W194 (1hqz1)P45 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGI 1hqz1 42 :EYE T0547 195 :AKSGG 1hqz1 46 :ESTGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=89923 # 1pg6A.191.101 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)G192 (1pg6A)I96 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1pg6A)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :V 1pg6A 95 :Q T0547 193 :IW 1pg6A 97 :VA T0547 196 :KSGG 1pg6A 100 :ELGE Number of specific fragments extracted= 3 number of extra gaps= 2 total=89926 # 2b0tA.191.204 read from T0547.t06.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)G192 (2b0tA)T206 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (2b0tA)L212 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (2b0tA)K213 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :V 2b0tA 205 :E T0547 193 :IWAKS 2b0tA 207 :ILKDS Number of specific fragments extracted= 2 number of extra gaps= 2 total=89928 # 1wdaA.191.478 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K196 (1wdaA)S477 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1wdaA)V479 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1wdaA)P480 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWA 1wdaA 472 :VDEFL T0547 197 :S 1wdaA 478 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=89930 # 1wleA.191.167 read from T0547.t06.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)G192 (1wleA)A169 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1wleA)H173 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :V 1wleA 168 :Q T0547 193 :IWA 1wleA 170 :RVL T0547 197 :SGG 1wleA 174 :VVG Number of specific fragments extracted= 3 number of extra gaps= 2 total=89933 # 1knmA.191.69 read from T0547.t06.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)G198 (1knmA)W77 because G (3-10) conformation "forbidden" or filtered. T0547 191 :VGIWAKS 1knmA 70 :KVQIYSC T0547 199 :G 1knmA 78 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=89935 # 1o97D.191.125 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)G192 (1o97D)E127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1o97D)T131 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1o97D)R132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1o97D)G134 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :V 1o97D 126 :D T0547 193 :IWA 1o97D 128 :LVA T0547 198 :G 1o97D 133 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=89938 # 1fp3A.191.34 read from T0547.t06.many.frag # found chain 1fp3A in template set Warning: unaligning (T0547)I193 (1fp3A)G37 because S (epsilon) conformation "forbidden" or filtered. T0547 191 :VG 1fp3A 35 :HG T0547 194 :WAKSGG 1fp3A 38 :FFTCLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=89940 # 1td6A.191.133 read from T0547.t06.many.frag # found chain 1td6A in template set Warning: unaligning (T0547)V191 (1td6A)K122 because T (delta_L) conformation "forbidden" or filtered. T0547 192 :GIWAKSGG 1td6A 123 :LNMIHYLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=89941 # 1xqwA.191.40 read from T0547.t06.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)V191 (1xqwA)S41 because Y (epsilon') conformation "forbidden" or filtered. T0547 192 :GIWAKSGG 1xqwA 42 :HDYLLSLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=89942 # 1wdpA.191.129 read from T0547.t06.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)G192 (1wdpA)N131 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1wdpA)Y134 because Y (epsilon') conformation "forbidden" or filtered. T0547 191 :V 1wdpA 130 :R T0547 193 :IW 1wdpA 132 :KE T0547 196 :KSGG 1wdpA 135 :LTVG Number of specific fragments extracted= 3 number of extra gaps= 2 total=89945 # 1l1dA.191.106 read from T0547.t06.many.frag # found chain 1l1dA in template set Warning: unaligning (T0547)G199 (1l1dA)G485 because P (beta_P) conformation "forbidden" or filtered. T0547 191 :VGIWAKSG 1l1dA 477 :HLGHVFPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=89946 # 1m40A.191.27 read from T0547.t06.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)S197 (1m40A)S59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1m40A)F60 because E (beta_S) conformation "forbidden" or filtered. T0547 191 :VGIWAK 1m40A 53 :SGKILE T0547 199 :G 1m40A 61 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=89948 # 1xdpA.191.601 read from T0547.t06.many.frag # found chain 1xdpA in template set Warning: unaligning (T0547)G192 (1xdpA)K604 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1xdpA)S610 because G (3-10) conformation "forbidden" or filtered. T0547 191 :V 1xdpA 603 :D T0547 193 :IWAKS 1xdpA 605 :KVYLS T0547 199 :G 1xdpA 611 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=89951 # 1jy1A.191.6 read from T0547.t06.many.frag # found chain 1jy1A in training set Warning: unaligning (T0547)G192 (1jy1A)Q152 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1jy1A)L158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1jy1A)D159 because N (gamma') conformation "forbidden" or filtered. T0547 191 :V 1jy1A 151 :G T0547 193 :IWAKS 1jy1A 153 :DIWDM Number of specific fragments extracted= 2 number of extra gaps= 2 total=89953 # 1l8aA.192.434 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)G192 (1l8aA)K435 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (1l8aA)L436 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1l8aA)I439 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1l8aA)P442 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :WA 1l8aA 437 :PY T0547 197 :SG 1l8aA 440 :TF T0547 200 :I 1l8aA 443 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=89956 # 1on3A.192.275 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)G199 (1on3A)P284 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GIWAKSG 1on3A 277 :TELRDIV T0547 200 :I 1on3A 285 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=89958 # 2ae0X.192.117 read from T0547.t06.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)G192 (2ae0X)Y118 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (2ae0X)P124 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWAKS 2ae0X 119 :PIYRM T0547 199 :GI 2ae0X 125 :PK Number of specific fragments extracted= 2 number of extra gaps= 2 total=89960 # 1hs6A.192.112 read from T0547.t06.many.frag # found chain 1hs6A in template set T0547 192 :GIWAKSGGI 1hs6A 112 :SSALQWLTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=89961 # 1extA.192.26 read from T0547.t06.many.frag # found chain 1extA in template set Warning: unaligning (T0547)W194 (1extA)L39 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GI 1extA 37 :TY T0547 195 :AKSGGI 1extA 40 :YNDCPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=89963 # 1xmtA.192.36 read from T0547.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)K196 (1xmtA)H41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1xmtA)V44 because E (beta_S) conformation "forbidden" or filtered. T0547 192 :GIWA 1xmtA 37 :MDLV T0547 197 :SG 1xmtA 42 :TY T0547 200 :I 1xmtA 45 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=89966 # 1bvoA.192.67 read from T0547.t06.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)G199 (1bvoA)G122 because Y (epsilon') conformation "forbidden" or filtered. T0547 192 :GIWAKSG 1bvoA 115 :PHPHNLV T0547 200 :I 1bvoA 123 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=89968 # 1h7sA.192.211 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)G192 (1h7sA)Q212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IW 1h7sA 213 :PV T0547 196 :KSGGI 1h7sA 216 :CTGGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=89970 # 1gmuA.192.39 read from T0547.t06.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)G192 (1gmuA)A40 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1gmuA)L43 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1gmuA)R46 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IW 1gmuA 41 :GL T0547 196 :KS 1gmuA 44 :LP T0547 199 :GI 1gmuA 47 :GL Number of specific fragments extracted= 3 number of extra gaps= 3 total=89973 # 1n35A.192.307 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)K196 (1n35A)G312 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1n35A)M314 because N (gamma') conformation "forbidden" or filtered. T0547 192 :GIWA 1n35A 308 :FMYM T0547 197 :S 1n35A 313 :V T0547 199 :GI 1n35A 315 :PL Number of specific fragments extracted= 3 number of extra gaps= 2 total=89976 # 2b61A.192.81 read from T0547.t06.many.frag # found chain 2b61A in training set T0547 192 :GIWAKSGGI 2b61A 63 :GWWQNFMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=89977 # 1fy7A.192.128 read from T0547.t06.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)G192 (1fy7A)L286 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1fy7A)Y289 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1fy7A)E293 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IW 1fy7A 287 :VG T0547 196 :KSG 1fy7A 290 :FSK T0547 200 :I 1fy7A 294 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=89980 # 1o97D.192.126 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)G192 (1o97D)E127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1o97D)R132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1o97D)Y135 because L (left) conformation "forbidden" or filtered. T0547 193 :IWAK 1o97D 128 :LVAT T0547 198 :GG 1o97D 133 :GG Number of specific fragments extracted= 2 number of extra gaps= 3 total=89982 # 1eaiC.192.8 read from T0547.t06.many.frag # found chain 1eaiC in template set Warning: unaligning (T0547)S197 (1eaiC)C14 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1eaiC)T15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1eaiC)E18 T0547 192 :GIWAK 1eaiC 9 :EVWTE T0547 199 :G 1eaiC 16 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=89984 # 1knmA.192.70 read from T0547.t06.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)G192 (1knmA)V71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I193 (1knmA)Q72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1knmA)Y74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1knmA)W77 because G (3-10) conformation "forbidden" or filtered. T0547 194 :W 1knmA 73 :I T0547 196 :KS 1knmA 75 :SC T0547 199 :GI 1knmA 78 :GG Number of specific fragments extracted= 3 number of extra gaps= 3 total=89987 # 1fp3A.192.35 read from T0547.t06.many.frag # found chain 1fp3A in template set Warning: unaligning (T0547)I193 (1fp3A)G37 because S (epsilon) conformation "forbidden" or filtered. T0547 192 :G 1fp3A 36 :G T0547 194 :WAKSGGI 1fp3A 38 :FFTCLGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=89989 # 1l1dA.192.107 read from T0547.t06.many.frag # found chain 1l1dA in template set Warning: unaligning (T0547)G198 (1l1dA)D484 because G (3-10) conformation "forbidden" or filtered. T0547 192 :GIWAKS 1l1dA 478 :LGHVFP T0547 199 :GI 1l1dA 485 :GP Number of specific fragments extracted= 2 number of extra gaps= 1 total=89991 # 1hqz1.192.42 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)G192 (1hqz1)Y43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IWA 1hqz1 44 :EPE T0547 197 :SGGI 1hqz1 48 :TGSS Number of specific fragments extracted= 2 number of extra gaps= 2 total=89993 # 2c43A.192.137 read from T0547.t06.many.frag # found chain 2c43A in template set Warning: unaligning (T0547)A195 (2c43A)M141 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (2c43A)S144 because E (beta_S) conformation "forbidden" or filtered. T0547 192 :GIW 2c43A 138 :IDI T0547 196 :KS 2c43A 142 :KT T0547 199 :GI 2c43A 145 :FP Number of specific fragments extracted= 3 number of extra gaps= 2 total=89996 # 1lml.192.81 read from T0547.t06.many.frag # found chain 1lml in template set T0547 192 :GIWAKSGGI 1lml 181 :WKVTDMVGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=89997 # 1pg6A.192.102 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)G198 (1pg6A)G102 because Y (epsilon') conformation "forbidden" or filtered. T0547 192 :GIWAKS 1pg6A 96 :IVALEL T0547 199 :GI 1pg6A 103 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=89999 # 1m40A.192.28 read from T0547.t06.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)K196 (1m40A)E58 because Y (epsilon') conformation "forbidden" or filtered. T0547 192 :GIWA 1m40A 54 :GKIL T0547 197 :SGGI 1m40A 59 :SFRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=90001 # 1wdaA.192.479 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G192 (1wdaA)D473 because G (3-10) conformation "forbidden" or filtered. T0547 193 :IWAKSGGI 1wdaA 474 :EFLSFVPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=90002 # 1jy1A.192.7 read from T0547.t06.many.frag # found chain 1jy1A in training set Warning: unaligning (T0547)I193 (1jy1A)D153 because Y (epsilon') conformation "forbidden" or filtered. T0547 192 :G 1jy1A 152 :Q T0547 194 :WAKSGGI 1jy1A 154 :IWDMLDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=90004 # 1wleA.192.168 read from T0547.t06.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)G192 (1wleA)A169 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1wleA)H173 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1wleA)V175 because E (beta_S) conformation "forbidden" or filtered. T0547 193 :IWA 1wleA 170 :RVL T0547 197 :S 1wleA 174 :V T0547 199 :GI 1wleA 176 :GD Number of specific fragments extracted= 3 number of extra gaps= 3 total=90007 # 1wdpA.192.130 read from T0547.t06.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)G199 (1wdpA)G138 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1wdpA)V139 because G (3-10) conformation "forbidden" or filtered. T0547 192 :GIWAKSG 1wdpA 131 :NKEYLTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=90008 # 1sf8A.192.36 read from T0547.t06.many.frag # found chain 1sf8A in template set Warning: unaligning (T0547)G198 (1sf8A)T541 because E (beta_S) conformation "forbidden" or filtered. T0547 192 :GIWAKS 1sf8A 535 :TPAIVS T0547 199 :GI 1sf8A 542 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=90010 # 1knwA.192.151 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 192 :GIWAKSGGI 1knwA 152 :SQKTNTGGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90011 # 1zwxA.192.115 read from T0547.t06.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G192 (1zwxA)Q150 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1zwxA)G157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1zwxA)G158 because S (epsilon) conformation "forbidden" or filtered. T0547 193 :IWAKSG 1zwxA 151 :HIFQRG Number of specific fragments extracted= 1 number of extra gaps= 2 total=90012 # 1wspA.192.56 read from T0547.t06.many.frag # found chain 1wspA in template set Warning: unaligning (T0547)G198 (1wspA)R811 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1wspA)E812 because P (beta_P) conformation "forbidden" or filtered. T0547 192 :GIWAKS 1wspA 805 :VVFEEV T0547 200 :I 1wspA 813 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=90014 # 1l8aA.193.435 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)I193 (1l8aA)L436 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1l8aA)F441 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1l8aA)G444 because T (delta_L) conformation "forbidden" or filtered. T0547 194 :WAKS 1l8aA 437 :PYIT T0547 199 :GI 1l8aA 442 :PE Number of specific fragments extracted= 2 number of extra gaps= 3 total=90016 # 1on3A.193.276 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)G199 (1on3A)P284 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWAKSG 1on3A 278 :ELRDIV T0547 200 :IN 1on3A 285 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=90018 # 2ae0X.193.118 read from T0547.t06.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)S197 (2ae0X)M123 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (2ae0X)P124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (2ae0X)P125 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWAK 2ae0X 119 :PIYR T0547 200 :IN 2ae0X 126 :KR Number of specific fragments extracted= 2 number of extra gaps= 1 total=90020 # 1fy7A.193.129 read from T0547.t06.many.frag # found chain 1fy7A in template set T0547 193 :IWAKSGGIN 1fy7A 287 :VGYFSKEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90021 # 1hs6A.193.113 read from T0547.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0547)A195 (1hs6A)L115 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1hs6A)T119 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IW 1hs6A 113 :SA T0547 196 :KSG 1hs6A 116 :QWL T0547 200 :IN 1hs6A 120 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=90024 # 1xmtA.193.37 read from T0547.t06.many.frag # found chain 1xmtA in training set T0547 193 :IWAKSGGIN 1xmtA 38 :DLVHTYVPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90025 # 1extA.193.27 read from T0547.t06.many.frag # found chain 1extA in template set Warning: unaligning (T0547)W194 (1extA)L39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1extA)P44 because G (3-10) conformation "forbidden" or filtered. T0547 193 :I 1extA 38 :Y T0547 195 :AKSG 1extA 40 :YNDC T0547 200 :IN 1extA 45 :GP Number of specific fragments extracted= 3 number of extra gaps= 2 total=90028 # 1n35A.193.308 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)K196 (1n35A)G312 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1n35A)M314 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1n35A)P315 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWA 1n35A 309 :MYM T0547 197 :S 1n35A 313 :V T0547 200 :IN 1n35A 316 :LS Number of specific fragments extracted= 3 number of extra gaps= 2 total=90031 # 1o97D.193.127 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)S197 (1o97D)R132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1o97D)Y135 because L (left) conformation "forbidden" or filtered. T0547 193 :IWAK 1o97D 128 :LVAT T0547 198 :GG 1o97D 133 :GG T0547 201 :N 1o97D 136 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=90034 # 1gmuA.193.40 read from T0547.t06.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)A195 (1gmuA)L43 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1gmuA)R46 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IW 1gmuA 41 :GL T0547 196 :KS 1gmuA 44 :LP T0547 199 :GIN 1gmuA 47 :GLL Number of specific fragments extracted= 3 number of extra gaps= 2 total=90037 # 1h7sA.193.212 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IW 1h7sA 213 :PV T0547 196 :KSGGIN 1h7sA 216 :CTGGSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=90039 # 1knmA.193.71 read from T0547.t06.many.frag # found chain 1knmA in training set T0547 193 :IWAKSGGIN 1knmA 72 :QIYSCWGGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90040 # 1knwA.193.152 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K196 (1knwA)N156 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1knwA)G158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1knwA)N161 because G (3-10) conformation "forbidden" or filtered. T0547 193 :IWA 1knwA 153 :QKT T0547 197 :S 1knwA 157 :T T0547 199 :GI 1knwA 159 :GE Number of specific fragments extracted= 3 number of extra gaps= 3 total=90043 # 1bvoA.193.68 read from T0547.t06.many.frag # found chain 1bvoA in template set T0547 193 :IWAKSGGIN 1bvoA 116 :HPHNLVGKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90044 # 1cfr.193.1 read from T0547.t06.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)G198 (1cfr)S7 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1cfr)G10 because S (epsilon) conformation "forbidden" or filtered. T0547 193 :IWAKS 1cfr 2 :DIISK T0547 199 :GI 1cfr 8 :GE Number of specific fragments extracted= 2 number of extra gaps= 2 total=90046 # 1fp3A.193.36 read from T0547.t06.many.frag # found chain 1fp3A in template set Warning: unaligning (T0547)G199 (1fp3A)G43 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWAKSG 1fp3A 37 :GFFTCL T0547 200 :IN 1fp3A 44 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=90048 # 2b61A.193.82 read from T0547.t06.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)S197 (2b61A)F68 because G (3-10) conformation "forbidden" or filtered. T0547 193 :IWAK 2b61A 64 :WWQN T0547 198 :GGIN 2b61A 69 :MGAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=90050 # 1l1dA.193.108 read from T0547.t06.many.frag # found chain 1l1dA in template set T0547 193 :IWAKSGGIN 1l1dA 479 :GHVFPDGPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90051 # 1m40A.193.29 read from T0547.t06.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)K196 (1m40A)E58 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1m40A)S59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1m40A)F60 because E (beta_S) conformation "forbidden" or filtered. T0547 193 :IWA 1m40A 55 :KIL T0547 199 :GIN 1m40A 61 :RPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=90053 # 1eaiC.193.9 read from T0547.t06.many.frag # found chain 1eaiC in template set Warning: unaligning (T0547)G198 (1eaiC)T15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1eaiC)E18 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1eaiC)E18 T0547 193 :IWAKS 1eaiC 10 :VWTEC T0547 199 :G 1eaiC 16 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=90055 # 1jy1A.193.8 read from T0547.t06.many.frag # found chain 1jy1A in training set Warning: unaligning (T0547)G198 (1jy1A)L158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1jy1A)G161 because T (delta_L) conformation "forbidden" or filtered. T0547 193 :IWAKS 1jy1A 153 :DIWDM T0547 199 :GI 1jy1A 159 :DK Number of specific fragments extracted= 2 number of extra gaps= 2 total=90057 # 1sf8A.193.37 read from T0547.t06.many.frag # found chain 1sf8A in template set Warning: unaligning (T0547)S197 (1sf8A)S540 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1sf8A)T541 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1sf8A)D542 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWAK 1sf8A 536 :PAIV T0547 200 :IN 1sf8A 543 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=90059 # 1a12A.193.184 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)K196 (1a12A)L196 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1a12A)G197 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1a12A)G199 because G (3-10) conformation "forbidden" or filtered. T0547 193 :IWA 1a12A 193 :LYT T0547 198 :G 1a12A 198 :C T0547 200 :IN 1a12A 200 :EQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=90062 # 1wdaA.193.480 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)W194 (1wdaA)F475 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1wdaA)S477 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1wdaA)V479 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1wdaA)P480 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :I 1wdaA 474 :E T0547 195 :A 1wdaA 476 :L T0547 197 :S 1wdaA 478 :F T0547 200 :IN 1wdaA 481 :AP Number of specific fragments extracted= 4 number of extra gaps= 3 total=90066 # 1io1A.193.102 read from T0547.t06.many.frag # found chain 1io1A in template set Warning: unaligning (T0547)A195 (1io1A)I157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1io1A)Q161 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IW 1io1A 155 :ID T0547 196 :KSG 1io1A 158 :DLK T0547 200 :IN 1io1A 162 :IN Number of specific fragments extracted= 3 number of extra gaps= 2 total=90069 # 1wleA.193.169 read from T0547.t06.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)K196 (1wleA)H173 because Y (epsilon') conformation "forbidden" or filtered. T0547 193 :IWA 1wleA 170 :RVL T0547 197 :SGGIN 1wleA 174 :VVGDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=90071 # 2c43A.193.138 read from T0547.t06.many.frag # found chain 2c43A in template set Warning: unaligning (T0547)G198 (2c43A)S144 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (2c43A)F145 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWAKS 2c43A 139 :DIMKT T0547 200 :IN 2c43A 146 :PG Number of specific fragments extracted= 2 number of extra gaps= 1 total=90073 # 1pg6A.193.103 read from T0547.t06.many.frag # found chain 1pg6A in training set T0547 193 :IWAKSGGIN 1pg6A 97 :VALELGEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=90074 # 1rw1A.193.90 read from T0547.t06.many.frag # found chain 1rw1A in training set Warning: unaligning (T0547)I193 because of BadResidue code BAD_PEPTIDE in next template residue (1rw1A)P93 Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE at template residue (1rw1A)P93 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE at template residue (1rw1A)V94 Warning: unaligning (T0547)I200 (1rw1A)G99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1rw1A)R100 because Y (epsilon') conformation "forbidden" or filtered. T0547 196 :KSGG 1rw1A 95 :LELG Number of specific fragments extracted= 1 number of extra gaps= 2 total=90075 # 1wspA.193.57 read from T0547.t06.many.frag # found chain 1wspA in template set Warning: unaligning (T0547)K196 (1wspA)E809 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1wspA)E812 because P (beta_P) conformation "forbidden" or filtered. T0547 193 :IWA 1wspA 806 :VFE T0547 197 :SG 1wspA 810 :VR T0547 200 :IN 1wspA 813 :DE Number of specific fragments extracted= 3 number of extra gaps= 2 total=90078 # 1on3A.194.277 read from T0547.t06.many.frag # found chain 1on3A in template set T0547 194 :WAKSGGINS 1on3A 279 :LRDIVPIDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90079 # 2ae0X.194.119 read from T0547.t06.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)K196 (2ae0X)R122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (2ae0X)M123 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (2ae0X)P124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (2ae0X)P125 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :WA 2ae0X 120 :IY T0547 200 :INS 2ae0X 126 :KRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=90081 # 1l8aA.194.436 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)G199 (1l8aA)P442 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :WAKSG 1l8aA 437 :PYITF T0547 200 :INS 1l8aA 443 :EGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=90083 # 1knwA.194.153 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 194 :WAKSGGINS 1knwA 154 :KTNTGGENS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90084 # 1xmtA.194.38 read from T0547.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G198 (1xmtA)Y43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1xmtA)V44 because E (beta_S) conformation "forbidden" or filtered. T0547 194 :WAKS 1xmtA 39 :LVHT T0547 200 :INS 1xmtA 45 :PSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=90086 # 1fy7A.194.130 read from T0547.t06.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)W194 (1fy7A)G288 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A195 (1fy7A)Y289 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1fy7A)E293 because P (beta_P) conformation "forbidden" or filtered. T0547 196 :KSG 1fy7A 290 :FSK T0547 200 :INS 1fy7A 294 :KES Number of specific fragments extracted= 2 number of extra gaps= 2 total=90088 # 1hs6A.194.114 read from T0547.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0547)G199 (1hs6A)T119 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :WAKSG 1hs6A 114 :ALQWL T0547 200 :INS 1hs6A 120 :PEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=90090 # 1o97D.194.128 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)G198 (1o97D)G133 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1o97D)Y135 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1o97D)Q137 because L (left) conformation "forbidden" or filtered. T0547 194 :WAKS 1o97D 129 :VATR T0547 199 :G 1o97D 134 :G T0547 201 :N 1o97D 136 :N Number of specific fragments extracted= 3 number of extra gaps= 3 total=90093 # 1n35A.194.309 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)N201 (1n35A)S317 because Y (epsilon') conformation "forbidden" or filtered. T0547 194 :WAKSGGI 1n35A 310 :YMGVMPL T0547 202 :S 1n35A 318 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=90095 # 1h7sA.194.213 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0547 194 :W 1h7sA 214 :V T0547 196 :KSGGINS 1h7sA 216 :CTGGSPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=90097 # 1cfr.194.2 read from T0547.t06.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)S202 (1cfr)N11 because G (3-10) conformation "forbidden" or filtered. T0547 194 :WAKSGGIN 1cfr 3 :IISKSGEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=90098 # 1knmA.194.72 read from T0547.t06.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)K196 (1knmA)S75 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1knmA)W77 because G (3-10) conformation "forbidden" or filtered. T0547 194 :WA 1knmA 73 :IY T0547 197 :S 1knmA 76 :C T0547 199 :GINS 1knmA 78 :GGDN Number of specific fragments extracted= 3 number of extra gaps= 2 total=90101 # 1extA.194.28 read from T0547.t06.many.frag # found chain 1extA in template set Warning: unaligning (T0547)W194 (1extA)L39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1extA)D42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1extA)C43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1extA)P44 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1extA)G45 because Y (epsilon') conformation "forbidden" or filtered. T0547 195 :AK 1extA 40 :YN T0547 201 :NS 1extA 46 :PG Number of specific fragments extracted= 2 number of extra gaps= 2 total=90103 # 1gmuA.194.41 read from T0547.t06.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)A195 (1gmuA)L43 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1gmuA)L50 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :W 1gmuA 42 :L T0547 196 :KSGGIN 1gmuA 44 :LPRGLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=90105 # 1wdaA.194.481 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K196 (1wdaA)S477 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1wdaA)V479 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. T0547 194 :WA 1wdaA 475 :FL T0547 197 :S 1wdaA 478 :F T0547 199 :GIN 1wdaA 480 :PAP Number of specific fragments extracted= 3 number of extra gaps= 3 total=90108 # 1a12A.194.185 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)K196 (1a12A)L196 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1a12A)C198 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1a12A)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 194 :WA 1a12A 194 :YT T0547 197 :S 1a12A 197 :G T0547 199 :GIN 1a12A 199 :GEQ Number of specific fragments extracted= 3 number of extra gaps= 3 total=90111 # 1pjhA.194.20 read from T0547.t06.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)G198 (1pjhA)I25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1pjhA)N26 because D (zeta) conformation "forbidden" or filtered. T0547 194 :WAKS 1pjhA 21 :IIHL T0547 200 :INS 1pjhA 27 :PDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=90113 # 1fp3A.194.37 read from T0547.t06.many.frag # found chain 1fp3A in template set Warning: unaligning (T0547)G199 (1fp3A)G43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1fp3A)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 194 :WAKSG 1fp3A 38 :FFTCL T0547 200 :IN 1fp3A 44 :RD Number of specific fragments extracted= 2 number of extra gaps= 2 total=90115 # 1bvoA.194.69 read from T0547.t06.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)G198 (1bvoA)V121 because E (beta_S) conformation "forbidden" or filtered. T0547 194 :WAKS 1bvoA 117 :PHNL T0547 199 :GINS 1bvoA 122 :GKEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=90117 # 1m40A.194.30 read from T0547.t06.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)S197 (1m40A)S59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1m40A)F60 because E (beta_S) conformation "forbidden" or filtered. T0547 194 :WAK 1m40A 56 :ILE T0547 199 :GINS 1m40A 61 :RPEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=90119 # 1jy1A.194.9 read from T0547.t06.many.frag # found chain 1jy1A in training set Warning: unaligning (T0547)G198 (1jy1A)L158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1jy1A)D159 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1jy1A)G161 because T (delta_L) conformation "forbidden" or filtered. T0547 194 :WAKS 1jy1A 154 :IWDM T0547 200 :I 1jy1A 160 :K T0547 202 :S 1jy1A 162 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=90122 # 1rw1A.194.91 read from T0547.t06.many.frag # found chain 1rw1A in training set Warning: unaligning (T0547)W194 because of BadResidue code BAD_PEPTIDE at template residue (1rw1A)P93 Warning: unaligning (T0547)A195 because of BadResidue code BAD_PEPTIDE at template residue (1rw1A)V94 Warning: unaligning (T0547)K196 (1rw1A)L95 because E (beta_S) conformation "forbidden" or filtered. T0547 197 :SGGINS 1rw1A 96 :ELGGRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=90123 # 1l1dA.194.109 read from T0547.t06.many.frag # found chain 1l1dA in template set T0547 194 :WAKSGGINS 1l1dA 480 :HVFPDGPRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90124 # 1wleA.194.170 read from T0547.t06.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)N201 (1wleA)K178 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :WAKSGGI 1wleA 171 :VLHVVGD T0547 202 :S 1wleA 179 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=90126 # 1sf8A.194.38 read from T0547.t06.many.frag # found chain 1sf8A in template set Warning: unaligning (T0547)G199 (1sf8A)D542 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :WAKSG 1sf8A 537 :AIVST T0547 200 :INS 1sf8A 543 :ADE Number of specific fragments extracted= 2 number of extra gaps= 1 total=90128 # 2b61A.194.83 read from T0547.t06.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)G199 (2b61A)G70 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (2b61A)L73 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :WAKSG 2b61A 65 :WQNFM T0547 200 :IN 2b61A 71 :AG Number of specific fragments extracted= 2 number of extra gaps= 2 total=90130 1v84A expands to /projects/compbio/data/pdb/1v84.pdb.gz 1v84A:# 1v84A.194.159 read from T0547.t06.many.frag # adding 1v84A to template set # found chain 1v84A in template set Warning: unaligning (T0547)K196 (1v84A)T243 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1v84A)F245 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :WA 1v84A 241 :WK T0547 197 :S 1v84A 244 :V T0547 199 :GINS 1v84A 246 :DPHR Number of specific fragments extracted= 3 number of extra gaps= 2 total=90133 # 1s4cA.194.2 read from T0547.t06.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)A195 (1s4cA)S4 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1s4cA)N8 because P (beta_P) conformation "forbidden" or filtered. T0547 194 :W 1s4cA 3 :I T0547 196 :KSG 1s4cA 5 :SLT T0547 200 :INS 1s4cA 9 :PNF Number of specific fragments extracted= 3 number of extra gaps= 2 total=90136 # 1hyoA.194.203 read from T0547.t06.many.frag # found chain 1hyoA in training set Warning: unaligning (T0547)G198 (1hyoA)V206 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE in next template residue (1hyoA)N210 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE at template residue (1hyoA)N210 T0547 194 :WAKS 1hyoA 202 :MAFF T0547 199 :GI 1hyoA 207 :GP Number of specific fragments extracted= 2 number of extra gaps= 2 total=90138 # 1tyv.194.90 read from T0547.t06.many.frag # found chain 1tyv in training set T0547 194 :WAKSGGINS 1tyv 203 :VIKPWTDDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=90139 # 1knwA.195.154 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K196 (1knwA)N156 because Y (epsilon') conformation "forbidden" or filtered. T0547 195 :A 1knwA 155 :T T0547 197 :SGGINSK 1knwA 157 :TGGENSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=90141 # 1on3A.195.278 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)G198 (1on3A)V283 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1on3A)P284 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKS 1on3A 280 :RDI T0547 200 :INSK 1on3A 285 :IDGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=90143 # 1xmtA.195.39 read from T0547.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)K196 (1xmtA)H41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1xmtA)Y43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1xmtA)V44 because E (beta_S) conformation "forbidden" or filtered. T0547 195 :A 1xmtA 40 :V T0547 197 :S 1xmtA 42 :T T0547 200 :INSK 1xmtA 45 :PSFK Number of specific fragments extracted= 3 number of extra gaps= 2 total=90146 # 2ae0X.195.120 read from T0547.t06.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)G198 (2ae0X)P124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (2ae0X)P125 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKS 2ae0X 121 :YRM T0547 200 :INSK 2ae0X 126 :KRGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=90148 # 1l8aA.195.437 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)G198 (1l8aA)F441 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1l8aA)G444 because T (delta_L) conformation "forbidden" or filtered. T0547 195 :AKS 1l8aA 438 :YIT T0547 199 :GI 1l8aA 442 :PE T0547 202 :SK 1l8aA 445 :SE Number of specific fragments extracted= 3 number of extra gaps= 2 total=90151 # 1hs6A.195.115 read from T0547.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0547)G198 (1hs6A)L118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1hs6A)T119 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKS 1hs6A 115 :LQW T0547 200 :INSK 1hs6A 120 :PEQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=90153 # 1fy7A.195.131 read from T0547.t06.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)G198 (1fy7A)K292 because E (beta_S) conformation "forbidden" or filtered. T0547 195 :AKS 1fy7A 289 :YFS T0547 199 :GINSK 1fy7A 293 :EKESA Number of specific fragments extracted= 2 number of extra gaps= 1 total=90155 # 1o97D.195.129 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)S197 (1o97D)R132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1o97D)G133 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1o97D)Q137 because L (left) conformation "forbidden" or filtered. T0547 195 :AK 1o97D 130 :AT T0547 199 :GIN 1o97D 134 :GYN T0547 203 :K 1o97D 138 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=90158 # 1n35A.195.310 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)G198 (1n35A)M314 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1n35A)P315 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKS 1n35A 311 :MGV T0547 200 :INSK 1n35A 316 :LSAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=90160 # 1hyoA.195.204 read from T0547.t06.many.frag # found chain 1hyoA in training set Warning: unaligning (T0547)G198 (1hyoA)V206 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE in next template residue (1hyoA)N210 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE at template residue (1hyoA)N210 T0547 195 :AKS 1hyoA 203 :AFF T0547 199 :GI 1hyoA 207 :GP T0547 203 :K 1hyoA 211 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=90163 # 1wdaA.195.482 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)A195 (1wdaA)L476 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1wdaA)S477 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1wdaA)V479 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1wdaA)P480 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. T0547 197 :S 1wdaA 478 :F T0547 200 :IN 1wdaA 481 :AP T0547 203 :K 1wdaA 484 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=90166 # 1a12A.195.186 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)S197 (1a12A)G197 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1a12A)G199 because G (3-10) conformation "forbidden" or filtered. T0547 195 :AK 1a12A 195 :TL T0547 198 :G 1a12A 198 :C T0547 200 :INSK 1a12A 200 :EQGQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=90169 # 1cfr.195.3 read from T0547.t06.many.frag # found chain 1cfr in template set T0547 195 :AKSGGINSK 1cfr 4 :ISKSGEGNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90170 # 1ze3D.195.48 read from T0547.t06.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)K196 (1ze3D)T50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1ze3D)N52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1ze3D)T53 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :A 1ze3D 49 :V T0547 197 :S 1ze3D 51 :F T0547 200 :INSK 1ze3D 54 :GDSE Number of specific fragments extracted= 3 number of extra gaps= 2 total=90173 # 1pjhA.195.21 read from T0547.t06.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)G199 (1pjhA)N26 because D (zeta) conformation "forbidden" or filtered. T0547 195 :AKSG 1pjhA 22 :IHLI T0547 200 :INSK 1pjhA 27 :PDNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=90175 # 1s4cA.195.3 read from T0547.t06.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)A195 (1s4cA)S4 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1s4cA)N8 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1s4cA)N10 because G (3-10) conformation "forbidden" or filtered. T0547 196 :KSG 1s4cA 5 :SLT T0547 200 :I 1s4cA 9 :P T0547 202 :SK 1s4cA 11 :FK Number of specific fragments extracted= 3 number of extra gaps= 3 total=90178 # 1m40A.195.31 read from T0547.t06.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)K196 (1m40A)E58 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1m40A)R65 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :A 1m40A 57 :L T0547 197 :SGGINS 1m40A 59 :SFRPEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=90180 # 1l1dA.195.110 read from T0547.t06.many.frag # found chain 1l1dA in template set T0547 195 :AKSGGINSK 1l1dA 481 :VFPDGPRDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90181 # 1fp3A.195.38 read from T0547.t06.many.frag # found chain 1fp3A in template set Warning: unaligning (T0547)A195 (1fp3A)F39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1fp3A)L42 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1fp3A)G43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1fp3A)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 196 :KS 1fp3A 40 :TC T0547 200 :IN 1fp3A 44 :RD T0547 203 :K 1fp3A 47 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=90184 # 1jy1A.195.10 read from T0547.t06.many.frag # found chain 1jy1A in training set Warning: unaligning (T0547)G198 (1jy1A)L158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1jy1A)D159 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1jy1A)G161 because T (delta_L) conformation "forbidden" or filtered. T0547 195 :AKS 1jy1A 155 :WDM T0547 200 :I 1jy1A 160 :K T0547 202 :SK 1jy1A 162 :NP Number of specific fragments extracted= 3 number of extra gaps= 2 total=90187 # 1gmuA.195.42 read from T0547.t06.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)A195 (1gmuA)L43 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1gmuA)R46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1gmuA)L50 because P (beta_P) conformation "forbidden" or filtered. T0547 196 :KS 1gmuA 44 :LP T0547 199 :GIN 1gmuA 47 :GLL T0547 203 :K 1gmuA 51 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=90190 # 1h7sA.195.214 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)A195 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0547 196 :KSGGINSK 1h7sA 216 :CTGGSPSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=90191 # 1ft5A.195.62 read from T0547.t06.many.frag # found chain 1ft5A in training set Warning: unaligning (T0547)S197 (1ft5A)V65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1ft5A)D66 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AK 1ft5A 63 :CH T0547 199 :GINSK 1ft5A 67 :GFGQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=90193 # 1bvoA.195.70 read from T0547.t06.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)G198 (1bvoA)V121 because E (beta_S) conformation "forbidden" or filtered. T0547 195 :AKS 1bvoA 118 :HNL T0547 199 :GINSK 1bvoA 122 :GKEGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=90195 # 1tyv.195.91 read from T0547.t06.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)N201 (1tyv)D210 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1tyv)N211 because L (left) conformation "forbidden" or filtered. T0547 195 :AKSGGI 1tyv 204 :IKPWTD T0547 203 :K 1tyv 212 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=90197 # 1v84A.195.160 read from T0547.t06.many.frag # found chain 1v84A in template set Warning: unaligning (T0547)N201 (1v84A)H248 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1v84A)R249 because P (beta_P) conformation "forbidden" or filtered. T0547 195 :AKSGGI 1v84A 242 :KTVFDP T0547 203 :K 1v84A 250 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=90199 # 1knmA.195.73 read from T0547.t06.many.frag # found chain 1knmA in training set Warning: unaligning (T0547)A195 (1knmA)Y74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1knmA)S75 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1knmA)W77 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1knmA)Q82 because G (3-10) conformation "forbidden" or filtered. T0547 197 :S 1knmA 76 :C T0547 199 :GINS 1knmA 78 :GGDN Number of specific fragments extracted= 2 number of extra gaps= 3 total=90201 # 1szwA.195.135 read from T0547.t06.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)A195 (1szwA)Y114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K196 (1szwA)A115 because Y (epsilon') conformation "forbidden" or filtered. T0547 197 :SGGINSK 1szwA 116 :RHKRKLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=90202 # 1fpoA.195.3 read from T0547.t06.many.frag # found chain 1fpoA in training set T0547 195 :AKSGGINSK 1fpoA 4 :FTLFGLPAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90203 # 1extA.195.29 read from T0547.t06.many.frag # found chain 1extA in template set Warning: unaligning (T0547)N201 (1extA)P46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1extA)G47 because T (delta_L) conformation "forbidden" or filtered. T0547 195 :AKSGGI 1extA 40 :YNDCPG T0547 203 :K 1extA 48 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=90205 # 1knwA.196.155 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N201 (1knwA)N161 because G (3-10) conformation "forbidden" or filtered. T0547 196 :KSGGI 1knwA 156 :NTGGE T0547 202 :SKF 1knwA 162 :SKH Number of specific fragments extracted= 2 number of extra gaps= 1 total=90207 # 1xmtA.196.40 read from T0547.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G199 (1xmtA)V44 because E (beta_S) conformation "forbidden" or filtered. T0547 196 :KSG 1xmtA 41 :HTY T0547 200 :INSKF 1xmtA 45 :PSFKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=90209 # 1on3A.196.279 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)G198 (1on3A)V283 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1on3A)P284 because P (beta_P) conformation "forbidden" or filtered. T0547 196 :KS 1on3A 281 :DI T0547 200 :INSKF 1on3A 285 :IDGKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=90211 # 1n35A.196.311 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)K196 (1n35A)G312 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1n35A)M314 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1n35A)S317 because Y (epsilon') conformation "forbidden" or filtered. T0547 197 :S 1n35A 313 :V T0547 199 :GI 1n35A 315 :PL T0547 202 :SKF 1n35A 318 :AKY Number of specific fragments extracted= 3 number of extra gaps= 3 total=90214 # 1qo7A.196.43 read from T0547.t06.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)G199 (1qo7A)Q49 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. T0547 196 :KSG 1qo7A 46 :ESL T0547 200 :IN 1qo7A 50 :AD T0547 203 :KF 1qo7A 53 :RF Number of specific fragments extracted= 3 number of extra gaps= 2 total=90217 # 1hs6A.196.116 read from T0547.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0547)K196 (1hs6A)Q116 because E (beta_S) conformation "forbidden" or filtered. T0547 197 :SGGINSKF 1hs6A 117 :WLTPEQTS Number of specific fragments extracted= 1 number of extra gaps= 1 total=90218 # 2ae0X.196.121 read from T0547.t06.many.frag # found chain 2ae0X in template set T0547 196 :KSGGINSKF 2ae0X 122 :RMPPKRGRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90219 # 1wdaA.196.483 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K196 (1wdaA)S477 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1wdaA)V479 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1wdaA)P480 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. T0547 197 :S 1wdaA 478 :F T0547 200 :IN 1wdaA 481 :AP T0547 203 :KF 1wdaA 484 :RK Number of specific fragments extracted= 3 number of extra gaps= 3 total=90222 # 1ze3D.196.49 read from T0547.t06.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)G199 (1ze3D)T53 because P (beta_P) conformation "forbidden" or filtered. T0547 196 :KSG 1ze3D 50 :TFN T0547 200 :INSKF 1ze3D 54 :GDSEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=90224 # 1l8aA.196.438 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 196 :KSGGINSKF 1l8aA 439 :ITFPEGSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90225 # 1fy7A.196.132 read from T0547.t06.many.frag # found chain 1fy7A in template set T0547 196 :KSGGINSKF 1fy7A 290 :FSKEKESAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90226 # 1a12A.196.187 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)K196 (1a12A)L196 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1a12A)G197 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1a12A)C198 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1a12A)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 199 :GIN 1a12A 199 :GEQ T0547 203 :KF 1a12A 203 :QL Number of specific fragments extracted= 2 number of extra gaps= 2 total=90228 # 1o97D.196.130 read from T0547.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0547)S197 (1o97D)R132 because Y (epsilon') conformation "forbidden" or filtered. T0547 196 :K 1o97D 131 :T T0547 198 :GGINSKF 1o97D 133 :GGYNQKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=90230 # 1cfr.196.4 read from T0547.t06.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)G198 (1cfr)S7 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1cfr)G10 because S (epsilon) conformation "forbidden" or filtered. T0547 196 :KS 1cfr 5 :SK T0547 199 :GI 1cfr 8 :GE T0547 202 :SKF 1cfr 11 :NKY Number of specific fragments extracted= 3 number of extra gaps= 2 total=90233 # 1s4cA.196.4 read from T0547.t06.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)K196 (1s4cA)S5 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1s4cA)N8 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :SG 1s4cA 6 :LT T0547 200 :INSKF 1s4cA 9 :PNFKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=90235 # 1v84A.196.161 read from T0547.t06.many.frag # found chain 1v84A in template set Warning: unaligning (T0547)K196 (1v84A)T243 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1v84A)F251 because D (zeta) conformation "forbidden" or filtered. T0547 197 :SGGINSK 1v84A 244 :VFDPHRP Number of specific fragments extracted= 1 number of extra gaps= 2 total=90236 # 1ft5A.196.63 read from T0547.t06.many.frag # found chain 1ft5A in training set Warning: unaligning (T0547)S197 (1ft5A)V65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1ft5A)G72 because T (delta_L) conformation "forbidden" or filtered. T0547 196 :K 1ft5A 64 :H T0547 198 :GGINSK 1ft5A 66 :DGFGQK Number of specific fragments extracted= 2 number of extra gaps= 2 total=90238 # 1pjhA.196.22 read from T0547.t06.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)G198 (1pjhA)I25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1pjhA)N26 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1pjhA)L30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1pjhA)N31 because L (left) conformation "forbidden" or filtered. T0547 196 :KS 1pjhA 23 :HL T0547 200 :INS 1pjhA 27 :PDN Number of specific fragments extracted= 2 number of extra gaps= 2 total=90240 # 1l1dA.196.111 read from T0547.t06.many.frag # found chain 1l1dA in template set Warning: unaligning (T0547)G198 (1l1dA)D484 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1l1dA)G490 because T (delta_L) conformation "forbidden" or filtered. T0547 196 :KS 1l1dA 482 :FP T0547 199 :GINSK 1l1dA 485 :GPRDK Number of specific fragments extracted= 2 number of extra gaps= 2 total=90242 # 1hyoA.196.205 read from T0547.t06.many.frag # found chain 1hyoA in training set Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE in next template residue (1hyoA)N210 Warning: unaligning (T0547)S202 because of BadResidue code BAD_PEPTIDE at template residue (1hyoA)N210 T0547 196 :KSGGI 1hyoA 204 :FFVGP T0547 203 :KF 1hyoA 211 :RF Number of specific fragments extracted= 2 number of extra gaps= 1 total=90244 # 1senA.196.122 read from T0547.t06.many.frag # found chain 1senA in training set Warning: unaligning (T0547)G199 (1senA)N134 because P (beta_P) conformation "forbidden" or filtered. T0547 196 :KSG 1senA 131 :ENG T0547 200 :INSKF 1senA 135 :PSYKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=90246 # 1gmuA.196.43 read from T0547.t06.many.frag # found chain 1gmuA in training set Warning: unaligning (T0547)G198 (1gmuA)R46 because P (beta_P) conformation "forbidden" or filtered. T0547 196 :KS 1gmuA 44 :LP T0547 199 :GINSKF 1gmuA 47 :GLLLRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=90248 # 1z3xA.196.88 read from T0547.t06.many.frag # found chain 1z3xA in training set T0547 196 :KSGGINSKF 1z3xA 86 :GVIPLRSDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90249 # 1m40A.196.32 read from T0547.t06.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)K196 (1m40A)E58 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S197 (1m40A)S59 because Y (epsilon') conformation "forbidden" or filtered. T0547 198 :GGINSKF 1m40A 60 :FRPEERF Number of specific fragments extracted= 1 number of extra gaps= 1 total=90250 # 1jy1A.196.11 read from T0547.t06.many.frag # found chain 1jy1A in training set Warning: unaligning (T0547)G198 (1jy1A)L158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1jy1A)D159 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1jy1A)G161 because T (delta_L) conformation "forbidden" or filtered. T0547 196 :KS 1jy1A 156 :DM T0547 200 :I 1jy1A 160 :K T0547 202 :SKF 1jy1A 162 :NPF Number of specific fragments extracted= 3 number of extra gaps= 2 total=90253 # 1urjA.196.499 read from T0547.t06.many.frag # found chain 1urjA in template set Warning: unaligning (T0547)N201 (1urjA)D505 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1urjA)T506 because G (3-10) conformation "forbidden" or filtered. T0547 196 :KSGGI 1urjA 500 :NLCTF T0547 203 :KF 1urjA 507 :RH Number of specific fragments extracted= 2 number of extra gaps= 1 total=90255 # 1ta0A.196.111 read from T0547.t06.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)G199 (1ta0A)K190 because N (gamma') conformation "forbidden" or filtered. T0547 196 :KSG 1ta0A 187 :NYV T0547 200 :INSKF 1ta0A 191 :DLSRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=90257 # 1fp3A.196.39 read from T0547.t06.many.frag # found chain 1fp3A in template set Warning: unaligning (T0547)K196 (1fp3A)T40 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1fp3A)G43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1fp3A)D45 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1fp3A)G46 because T (delta_L) conformation "forbidden" or filtered. T0547 197 :SG 1fp3A 41 :CL T0547 200 :I 1fp3A 44 :R T0547 203 :KF 1fp3A 47 :RV Number of specific fragments extracted= 3 number of extra gaps= 3 total=90260 # 1fpoA.196.4 read from T0547.t06.many.frag # found chain 1fpoA in training set Warning: unaligning (T0547)K203 (1fpoA)R12 because Y (epsilon') conformation "forbidden" or filtered. T0547 196 :KSGGINS 1fpoA 5 :TLFGLPA T0547 204 :F 1fpoA 13 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=90262 # 1szwA.196.136 read from T0547.t06.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)K196 (1szwA)A115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1szwA)H117 because E (beta_S) conformation "forbidden" or filtered. T0547 197 :S 1szwA 116 :R T0547 199 :GINSKF 1szwA 118 :KRKLRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=90264 # 1knwA.197.156 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N201 (1knwA)N161 because G (3-10) conformation "forbidden" or filtered. T0547 197 :SGGI 1knwA 157 :TGGE T0547 202 :SKFG 1knwA 162 :SKHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=90266 # 1qo7A.197.44 read from T0547.t06.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)F204 (1qo7A)F54 because G (3-10) conformation "forbidden" or filtered. T0547 197 :SGGINSK 1qo7A 47 :SLQADGR T0547 205 :G 1qo7A 55 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=90268 # 1xmtA.197.41 read from T0547.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G199 (1xmtA)V44 because E (beta_S) conformation "forbidden" or filtered. T0547 197 :SG 1xmtA 42 :TY T0547 200 :INSKFG 1xmtA 45 :PSFKRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=90270 # 1on3A.197.280 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)G198 (1on3A)V283 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :S 1on3A 282 :I T0547 199 :GINSKFG 1on3A 284 :PIDGKKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=90272 # 1wdaA.197.484 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)N201 (1wdaA)P482 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1wdaA)K485 because T (delta_L) conformation "forbidden" or filtered. T0547 197 :SGGI 1wdaA 478 :FVPA T0547 203 :K 1wdaA 484 :R T0547 205 :G 1wdaA 486 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=90275 # 1n35A.197.312 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)G198 (1n35A)M314 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1n35A)S317 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1n35A)A321 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :S 1n35A 313 :V T0547 199 :GI 1n35A 315 :PL T0547 202 :SKF 1n35A 318 :AKY Number of specific fragments extracted= 3 number of extra gaps= 3 total=90278 # 1v84A.197.162 read from T0547.t06.many.frag # found chain 1v84A in template set Warning: unaligning (T0547)S202 (1v84A)R249 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1v84A)F251 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1v84A)A252 because N (gamma') conformation "forbidden" or filtered. T0547 197 :SGGIN 1v84A 244 :VFDPH T0547 203 :K 1v84A 250 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=90280 # 1lwbA.197.45 read from T0547.t06.many.frag # found chain 1lwbA in training set T0547 197 :SGGINSKFG 1lwbA 46 :TQAPDNPFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90281 # 1tx4A.197.1 read from T0547.t06.many.frag # found chain 1tx4A in training set Warning: unaligning (T0547)G198 because first residue in template chain is (1tx4A)P39 T0547 199 :GINSKFG 1tx4A 40 :LPNQQFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90282 # 1a12A.197.188 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)G198 (1a12A)C198 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1a12A)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 197 :S 1a12A 197 :G T0547 199 :GIN 1a12A 199 :GEQ T0547 203 :KFG 1a12A 203 :QLG Number of specific fragments extracted= 3 number of extra gaps= 2 total=90285 # 1hs6A.197.117 read from T0547.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0547)G199 (1hs6A)T119 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :SG 1hs6A 117 :WL T0547 200 :INSKFG 1hs6A 120 :PEQTSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=90287 # 1ft5A.197.64 read from T0547.t06.many.frag # found chain 1ft5A in training set Warning: unaligning (T0547)S197 (1ft5A)V65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G198 (1ft5A)D66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1ft5A)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1ft5A)G72 because T (delta_L) conformation "forbidden" or filtered. T0547 199 :GI 1ft5A 67 :GF T0547 202 :SK 1ft5A 70 :QK T0547 205 :G 1ft5A 73 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=90290 # 1ze3D.197.50 read from T0547.t06.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)G199 (1ze3D)T53 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :SG 1ze3D 51 :FN T0547 200 :INSKFG 1ze3D 54 :GDSEQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=90292 # 1qvzA.197.16 read from T0547.t06.many.frag # found chain 1qvzA in template set Warning: unaligning (T0547)G198 (1qvzA)Y18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1qvzA)D20 because G (3-10) conformation "forbidden" or filtered. T0547 197 :S 1qvzA 17 :F T0547 199 :G 1qvzA 19 :S T0547 201 :NSKFG 1qvzA 21 :GMKTG Number of specific fragments extracted= 3 number of extra gaps= 2 total=90295 # 1z3xA.197.89 read from T0547.t06.many.frag # found chain 1z3xA in training set Warning: unaligning (T0547)G199 (1z3xA)P89 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :SG 1z3xA 87 :VI T0547 200 :INSKFG 1z3xA 90 :LRSDRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=90297 # 2ae0X.197.122 read from T0547.t06.many.frag # found chain 2ae0X in template set T0547 197 :SGGINSKFG 2ae0X 123 :MPPKRGRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90298 # 1senA.197.123 read from T0547.t06.many.frag # found chain 1senA in training set Warning: unaligning (T0547)G199 (1senA)N134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1senA)F140 because N (gamma') conformation "forbidden" or filtered. T0547 197 :SG 1senA 132 :NG T0547 200 :INSKF 1senA 135 :PSYKY Number of specific fragments extracted= 2 number of extra gaps= 2 total=90300 # 1s4cA.197.5 read from T0547.t06.many.frag # found chain 1s4cA in template set T0547 197 :SGGINSKFG 1s4cA 6 :LTNPNFKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90301 # 1k47A.197.96 read from T0547.t06.many.frag # found chain 1k47A in template set T0547 197 :SGGINSKFG 1k47A 95 :MEREGKKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90302 # 1fy7A.197.133 read from T0547.t06.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)G198 (1fy7A)K292 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1fy7A)E293 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :S 1fy7A 291 :S T0547 200 :INSKFG 1fy7A 294 :KESADG Number of specific fragments extracted= 2 number of extra gaps= 1 total=90304 1fjgK expands to /projects/compbio/data/pdb/1fjg.pdb.gz 1fjgK:# 1fjgK.197.47 read from T0547.t06.many.frag # adding 1fjgK to template set # found chain 1fjgK in template set T0547 197 :SGGINSKFG 1fjgK 48 :IGYKGSRKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90305 # 1cfr.197.5 read from T0547.t06.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)S202 (1cfr)N11 because G (3-10) conformation "forbidden" or filtered. T0547 197 :SGGIN 1cfr 6 :KSGEG T0547 203 :KFG 1cfr 12 :KYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=90307 # 1nu7D.197.11 read from T0547.t06.many.frag # found chain 1nu7D in template set Warning: unaligning (T0547)G199 (1nu7D)N13 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1nu7D)G19 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :SG 1nu7D 11 :RV T0547 200 :INSKF 1nu7D 14 :ENSKY Number of specific fragments extracted= 2 number of extra gaps= 2 total=90309 # 1pjhA.197.23 read from T0547.t06.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)K203 (1pjhA)L30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1pjhA)N31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1pjhA)A32 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :SGGINS 1pjhA 24 :LINPDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=90310 # 1fpoA.197.5 read from T0547.t06.many.frag # found chain 1fpoA in training set Warning: unaligning (T0547)G198 (1fpoA)F7 because G (3-10) conformation "forbidden" or filtered. T0547 197 :S 1fpoA 6 :L T0547 199 :GINSKFG 1fpoA 8 :GLPARYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=90312 # 1ta0A.197.112 read from T0547.t06.many.frag # found chain 1ta0A in template set T0547 197 :SGGINSKFG 1ta0A 188 :YVKDLSRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90313 # 1rw1A.197.94 read from T0547.t06.many.frag # found chain 1rw1A in training set Warning: unaligning (T0547)K203 (1rw1A)L102 because E (beta_S) conformation "forbidden" or filtered. T0547 197 :SGGINS 1rw1A 96 :ELGGRT T0547 204 :FG 1rw1A 103 :VG Number of specific fragments extracted= 2 number of extra gaps= 1 total=90315 # 1ijyA.197.24 read from T0547.t06.many.frag # found chain 1ijyA in training set Warning: unaligning (T0547)G198 (1ijyA)T24 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1ijyA)Y25 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1ijyA)P27 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1ijyA)F30 because G (3-10) conformation "forbidden" or filtered. T0547 197 :S 1ijyA 23 :Y T0547 200 :I 1ijyA 26 :M T0547 202 :SK 1ijyA 28 :NQ T0547 205 :G 1ijyA 31 :N Number of specific fragments extracted= 4 number of extra gaps= 3 total=90319 # 1l1dA.197.112 read from T0547.t06.many.frag # found chain 1l1dA in template set Warning: unaligning (T0547)G198 (1l1dA)D484 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1l1dA)D488 because G (3-10) conformation "forbidden" or filtered. T0547 197 :S 1l1dA 483 :P T0547 199 :GIN 1l1dA 485 :GPR T0547 203 :KFG 1l1dA 489 :KGG Number of specific fragments extracted= 3 number of extra gaps= 2 total=90322 # 1oxwA.197.74 read from T0547.t06.many.frag # found chain 1oxwA in template set Warning: unaligning (T0547)G198 (1oxwA)P89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1oxwA)N90 because P (beta_P) conformation "forbidden" or filtered. T0547 197 :S 1oxwA 88 :T T0547 200 :INSKFG 1oxwA 91 :ENNRPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=90324 # 1knwA.198.157 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G198 (1knwA)G158 because Y (epsilon') conformation "forbidden" or filtered. T0547 199 :GINSKFGL 1knwA 159 :GENSKHGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=90325 # 1qo7A.198.45 read from T0547.t06.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)G199 (1qo7A)Q49 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1qo7A)G55 because S (epsilon) conformation "forbidden" or filtered. T0547 198 :G 1qo7A 48 :L T0547 200 :IN 1qo7A 50 :AD T0547 203 :KF 1qo7A 53 :RF T0547 206 :L 1qo7A 56 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=90329 # 1lwbA.198.46 read from T0547.t06.many.frag # found chain 1lwbA in training set Warning: unaligning (T0547)G198 (1lwbA)Q47 because G (3-10) conformation "forbidden" or filtered. T0547 199 :GINSKFGL 1lwbA 48 :APDNPFGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=90330 # 1tx4A.198.2 read from T0547.t06.many.frag # found chain 1tx4A in training set Warning: unaligning (T0547)G198 because first residue in template chain is (1tx4A)P39 T0547 199 :GINSKFGL 1tx4A 40 :LPNQQFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90331 # 1xmtA.198.42 read from T0547.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G198 (1xmtA)Y43 because E (beta_S) conformation "forbidden" or filtered. T0547 199 :GINSKFGL 1xmtA 44 :VPSFKRGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=90332 # 1k47A.198.97 read from T0547.t06.many.frag # found chain 1k47A in template set T0547 198 :GGINSKFGL 1k47A 96 :EREGKKFGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90333 # 1on3A.198.281 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)L206 (1on3A)Y291 because Y (epsilon') conformation "forbidden" or filtered. T0547 198 :GGINSKFG 1on3A 283 :VPIDGKKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=90334 # 1qvzA.198.17 read from T0547.t06.many.frag # found chain 1qvzA in template set Warning: unaligning (T0547)I200 (1qvzA)D20 because G (3-10) conformation "forbidden" or filtered. T0547 198 :GG 1qvzA 18 :YS T0547 201 :NSKFGL 1qvzA 21 :GMKTGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=90336 # 1v84A.198.163 read from T0547.t06.many.frag # found chain 1v84A in template set Warning: unaligning (T0547)G205 (1v84A)A252 because N (gamma') conformation "forbidden" or filtered. T0547 198 :GGINSKF 1v84A 245 :FDPHRPF T0547 206 :L 1v84A 253 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=90338 # 1wdaA.198.485 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G199 (1wdaA)P480 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1wdaA)R484 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L206 (1wdaA)F487 because Y (epsilon') conformation "forbidden" or filtered. T0547 198 :G 1wdaA 479 :V T0547 200 :IN 1wdaA 481 :AP T0547 204 :FG 1wdaA 485 :KG Number of specific fragments extracted= 3 number of extra gaps= 3 total=90341 # 1fjgK.198.48 read from T0547.t06.many.frag # found chain 1fjgK in template set T0547 198 :GGINSKFGL 1fjgK 49 :GYKGSRKGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=90342 # 7odcA.198.163 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 204 :FGL 7odcA 170 :FGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90343 # 1ta0A.198.113 read from T0547.t06.many.frag # found chain 1ta0A in template set Warning: unaligning (T0547)G199 (1ta0A)K190 because N (gamma') conformation "forbidden" or filtered. T0547 198 :G 1ta0A 189 :V T0547 200 :INSKFGL 1ta0A 191 :DLSRLGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=90345 # 1senA.198.124 read from T0547.t06.many.frag # found chain 1senA in training set Warning: unaligning (T0547)G199 (1senA)N134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1senA)F140 because N (gamma') conformation "forbidden" or filtered. T0547 198 :G 1senA 133 :G T0547 200 :INSKF 1senA 135 :PSYKY T0547 206 :L 1senA 141 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=90348 # 1ft5A.198.65 read from T0547.t06.many.frag # found chain 1ft5A in training set Warning: unaligning (T0547)G198 (1ft5A)D66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1ft5A)G72 because T (delta_L) conformation "forbidden" or filtered. T0547 199 :GINSK 1ft5A 67 :GFGQK T0547 205 :GL 1ft5A 73 :GY Number of specific fragments extracted= 2 number of extra gaps= 2 total=90350 # 1z3xA.198.90 read from T0547.t06.many.frag # found chain 1z3xA in training set Warning: unaligning (T0547)K203 (1z3xA)D93 because G (3-10) conformation "forbidden" or filtered. T0547 198 :GGINS 1z3xA 88 :IPLRS T0547 204 :FGL 1z3xA 94 :RGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=90352 # 1s4cA.198.6 read from T0547.t06.many.frag # found chain 1s4cA in template set T0547 198 :GGINSKFGL 1s4cA 7 :TNPNFKVGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90353 # 1a12A.198.189 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)G199 (1a12A)G199 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1a12A)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 198 :G 1a12A 198 :C T0547 200 :IN 1a12A 200 :EQ T0547 203 :KFGL 1a12A 203 :QLGR Number of specific fragments extracted= 3 number of extra gaps= 2 total=90356 # 1fpoA.198.6 read from T0547.t06.many.frag # found chain 1fpoA in training set Warning: unaligning (T0547)G198 (1fpoA)F7 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1fpoA)R12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L206 (1fpoA)L15 because Y (epsilon') conformation "forbidden" or filtered. T0547 199 :GINS 1fpoA 8 :GLPA T0547 204 :FG 1fpoA 13 :YQ Number of specific fragments extracted= 2 number of extra gaps= 3 total=90358 # 1e1hB.198.74 read from T0547.t06.many.frag # found chain 1e1hB in training set Warning: unaligning (T0547)G199 (1e1hB)D325 because P (beta_P) conformation "forbidden" or filtered. T0547 198 :G 1e1hB 324 :E T0547 200 :INSKFGL 1e1hB 326 :TSGKFSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=90360 # 1n35A.198.313 read from T0547.t06.many.frag # found chain 1n35A in template set T0547 198 :GGINSKFGL 1n35A 314 :MPLSAKYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90361 1ppjF expands to /projects/compbio/data/pdb/1ppj.pdb.gz 1ppjF:# 1ppjF.198.22 read from T0547.t06.many.frag # adding 1ppjF to template set # found chain 1ppjF in template set T0547 198 :GGINSKFGL 1ppjF 23 :AAGFNKLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90362 # 1rw1A.198.95 read from T0547.t06.many.frag # found chain 1rw1A in training set Warning: unaligning (T0547)N201 (1rw1A)R100 because Y (epsilon') conformation "forbidden" or filtered. T0547 198 :GGI 1rw1A 97 :LGG T0547 202 :SKFGL 1rw1A 101 :TLVGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=90364 # 1cfr.198.6 read from T0547.t06.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)N201 (1cfr)G10 because S (epsilon) conformation "forbidden" or filtered. T0547 198 :GGI 1cfr 7 :SGE T0547 202 :SKFGL 1cfr 11 :NKYTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=90366 # 1lml.198.88 read from T0547.t06.many.frag # found chain 1lml in template set Warning: unaligning (T0547)G199 (1lml)D189 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1lml)D193 because G (3-10) conformation "forbidden" or filtered. T0547 198 :G 1lml 188 :G T0547 200 :INS 1lml 190 :ICG T0547 204 :FGL 1lml 194 :FKV Number of specific fragments extracted= 3 number of extra gaps= 2 total=90369 # 1rv9A.198.46 read from T0547.t06.many.frag # found chain 1rv9A in training set Warning: unaligning (T0547)G198 because of BadResidue code BAD_PEPTIDE at template residue (1rv9A)L47 Warning: unaligning (T0547)G199 (1rv9A)N48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I200 (1rv9A)L49 because G (3-10) conformation "forbidden" or filtered. T0547 201 :NSKFGL 1rv9A 50 :GTHVGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=90370 # 1lvfA.198.71 read from T0547.t06.many.frag # found chain 1lvfA in template set T0547 198 :GGINSKFGL 1lvfA 72 :EANPRKFNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90371 # 1nu7D.198.12 read from T0547.t06.many.frag # found chain 1nu7D in template set Warning: unaligning (T0547)G198 (1nu7D)V12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1nu7D)N13 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1nu7D)G19 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :INSKF 1nu7D 14 :ENSKY T0547 206 :L 1nu7D 20 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=90373 # 1ze3D.198.51 read from T0547.t06.many.frag # found chain 1ze3D in template set Warning: unaligning (T0547)G198 (1ze3D)N52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G199 (1ze3D)T53 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1ze3D)S56 because Y (epsilon') conformation "forbidden" or filtered. T0547 200 :IN 1ze3D 54 :GD T0547 203 :KFGL 1ze3D 57 :EQGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=90375 # 1vquA.198.159 read from T0547.t06.many.frag # found chain 1vquA in template set Warning: unaligning (T0547)S202 (1vquA)V152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vquA)G155 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vquA)G155 T0547 198 :GGIN 1vquA 148 :EALG T0547 203 :K 1vquA 153 :N T0547 206 :L 1vquA 156 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=90378 # 1qo7A.199.46 read from T0547.t06.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)G199 (1qo7A)Q49 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. T0547 200 :IN 1qo7A 50 :AD T0547 203 :KFGLT 1qo7A 53 :RFGIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=90380 # 1knwA.199.158 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G199 (1knwA)G159 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1knwA)N161 because G (3-10) conformation "forbidden" or filtered. T0547 200 :I 1knwA 160 :E T0547 202 :SKFGLT 1knwA 162 :SKHGIW Number of specific fragments extracted= 2 number of extra gaps= 2 total=90382 # 1lwbA.199.47 read from T0547.t06.many.frag # found chain 1lwbA in training set Warning: unaligning (T0547)G199 (1lwbA)A48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1lwbA)D50 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :I 1lwbA 49 :P T0547 202 :SKFGLT 1lwbA 51 :NPFGFP Number of specific fragments extracted= 2 number of extra gaps= 2 total=90384 # 1tx4A.199.3 read from T0547.t06.many.frag # found chain 1tx4A in training set Warning: unaligning (T0547)N201 (1tx4A)N42 because G (3-10) conformation "forbidden" or filtered. T0547 199 :GI 1tx4A 40 :LP T0547 202 :SKFGLT 1tx4A 43 :QQFGVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=90386 # 7odcA.199.164 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 204 :FGLT 7odcA 170 :FGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=90387 # 1qvzA.199.18 read from T0547.t06.many.frag # found chain 1qvzA in template set T0547 199 :GINSKFGLT 1qvzA 19 :SDGMKTGVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=90388 # 1k47A.199.98 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)T207 (1k47A)G105 because L (left) conformation "forbidden" or filtered. T0547 199 :GINSKFGL 1k47A 97 :REGKKFGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=90389 # 1ta0A.199.114 read from T0547.t06.many.frag # found chain 1ta0A in template set T0547 199 :GINSKFGLT 1ta0A 190 :KDLSRLGRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90390 # 1xmtA.199.43 read from T0547.t06.many.frag # found chain 1xmtA in training set T0547 199 :GINSKFGLT 1xmtA 44 :VPSFKRGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90391 # 1f1mA.199.105 read from T0547.t06.many.frag # found chain 1f1mA in training set Warning: unaligning (T0547)K203 (1f1mA)K147 because Y (epsilon') conformation "forbidden" or filtered. T0547 199 :GINS 1f1mA 143 :TDLG T0547 204 :FGLT 1f1mA 148 :EGVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=90393 # 1v84A.199.164 read from T0547.t06.many.frag # found chain 1v84A in template set Warning: unaligning (T0547)G205 (1v84A)A252 because N (gamma') conformation "forbidden" or filtered. T0547 199 :GINSKF 1v84A 246 :DPHRPF T0547 206 :LT 1v84A 253 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=90395 # 1a12A.199.190 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)N201 (1a12A)Q201 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1a12A)G202 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T207 (1a12A)V207 because D (zeta) conformation "forbidden" or filtered. T0547 199 :GI 1a12A 199 :GE T0547 203 :KFGL 1a12A 203 :QLGR Number of specific fragments extracted= 2 number of extra gaps= 2 total=90397 # 1senA.199.125 read from T0547.t06.many.frag # found chain 1senA in training set Warning: unaligning (T0547)G205 (1senA)F140 because N (gamma') conformation "forbidden" or filtered. T0547 199 :GINSKF 1senA 134 :NPSYKY T0547 206 :LT 1senA 141 :YV Number of specific fragments extracted= 2 number of extra gaps= 1 total=90399 # 1on3A.199.282 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)L206 (1on3A)Y291 because Y (epsilon') conformation "forbidden" or filtered. T0547 199 :GINSKFG 1on3A 284 :PIDGKKG T0547 207 :T 1on3A 292 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=90401 # 1z3xA.199.91 read from T0547.t06.many.frag # found chain 1z3xA in training set Warning: unaligning (T0547)G199 (1z3xA)P89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1z3xA)D93 because G (3-10) conformation "forbidden" or filtered. T0547 200 :INS 1z3xA 90 :LRS T0547 204 :FGLT 1z3xA 94 :RGVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=90403 # 1ft5A.199.66 read from T0547.t06.many.frag # found chain 1ft5A in training set Warning: unaligning (T0547)N201 (1ft5A)G69 because T (delta_L) conformation "forbidden" or filtered. T0547 199 :GI 1ft5A 67 :GF T0547 202 :SKFGLT 1ft5A 70 :QKGGYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=90405 # 1rv9A.199.47 read from T0547.t06.many.frag # found chain 1rv9A in training set Warning: unaligning (T0547)G199 (1rv9A)N48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1rv9A)H52 because G (3-10) conformation "forbidden" or filtered. T0547 200 :INS 1rv9A 49 :LGT T0547 204 :FGLT 1rv9A 53 :VGDN Number of specific fragments extracted= 2 number of extra gaps= 2 total=90407 # 1fpoA.199.7 read from T0547.t06.many.frag # found chain 1fpoA in training set Warning: unaligning (T0547)K203 (1fpoA)R12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1fpoA)Q14 because P (beta_P) conformation "forbidden" or filtered. T0547 199 :GINS 1fpoA 8 :GLPA T0547 204 :F 1fpoA 13 :Y T0547 206 :LT 1fpoA 15 :LD Number of specific fragments extracted= 3 number of extra gaps= 2 total=90410 # 1rw1A.199.96 read from T0547.t06.many.frag # found chain 1rw1A in training set Warning: unaligning (T0547)N201 (1rw1A)R100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L206 (1rw1A)F105 because D (zeta) conformation "forbidden" or filtered. T0547 199 :GI 1rw1A 98 :GG T0547 202 :SKFG 1rw1A 101 :TLVG T0547 207 :T 1rw1A 106 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=90413 # 1fjgK.199.49 read from T0547.t06.many.frag # found chain 1fjgK in template set Warning: unaligning (T0547)G199 (1fjgK)Y50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1fjgK)G56 because G (3-10) conformation "forbidden" or filtered. T0547 200 :INSKF 1fjgK 51 :KGSRK T0547 206 :LT 1fjgK 57 :TP Number of specific fragments extracted= 2 number of extra gaps= 2 total=90415 # 1ppjB.199.178 read from T0547.t06.many.frag # found chain 1ppjB in template set Warning: unaligning (T0547)G205 (1ppjB)K185 because G (3-10) conformation "forbidden" or filtered. T0547 199 :GINSKF 1ppjB 179 :PDYRIG T0547 206 :LT 1ppjB 186 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=90417 # 1bo1A.199.104 read from T0547.t06.many.frag # found chain 1bo1A in template set Warning: unaligning (T0547)F204 (1bo1A)F110 because G (3-10) conformation "forbidden" or filtered. T0547 199 :GINSK 1bo1A 105 :NLRER T0547 205 :GLT 1bo1A 111 :GID Number of specific fragments extracted= 2 number of extra gaps= 1 total=90419 # 1wdaA.199.486 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)S202 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1wdaA)R484 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L206 (1wdaA)F487 because Y (epsilon') conformation "forbidden" or filtered. T0547 199 :GIN 1wdaA 480 :PAP T0547 204 :FG 1wdaA 485 :KG T0547 207 :T 1wdaA 488 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=90422 # 1jfxA.199.103 read from T0547.t06.many.frag # found chain 1jfxA in training set Warning: unaligning (T0547)F204 (1jfxA)Y109 because L (left) conformation "forbidden" or filtered. T0547 199 :GINSK 1jfxA 104 :SGAMC T0547 205 :GLT 1jfxA 110 :GLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=90424 # 1e1hB.199.75 read from T0547.t06.many.frag # found chain 1e1hB in training set Warning: unaligning (T0547)G199 (1e1hB)D325 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1e1hB)K329 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1e1hB)S331 because Y (epsilon') conformation "forbidden" or filtered. T0547 200 :INS 1e1hB 326 :TSG T0547 204 :F 1e1hB 330 :F T0547 206 :LT 1e1hB 332 :VD Number of specific fragments extracted= 3 number of extra gaps= 3 total=90427 # 1ppjF.199.23 read from T0547.t06.many.frag # found chain 1ppjF in template set Warning: unaligning (T0547)I200 (1ppjF)G25 because T (delta_L) conformation "forbidden" or filtered. T0547 199 :G 1ppjF 24 :A T0547 201 :NSKFGLT 1ppjF 26 :FNKLGLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=90429 # 1lml.199.89 read from T0547.t06.many.frag # found chain 1lml in template set Warning: unaligning (T0547)G199 (1lml)D189 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :INSKFGLT 1lml 190 :ICGDFKVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=90430 # 1vquA.199.160 read from T0547.t06.many.frag # found chain 1vquA in template set Warning: unaligning (T0547)I200 (1vquA)L150 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1vquA)G151 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vquA)G155 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vquA)G155 T0547 199 :G 1vquA 149 :A T0547 202 :SK 1vquA 152 :VN T0547 206 :LT 1vquA 156 :AS Number of specific fragments extracted= 3 number of extra gaps= 2 total=90433 # 1s95A.199.187 read from T0547.t06.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 199 :G 1s95A 354 :G T0547 202 :SKFGLT 1s95A 357 :SEDGVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=90435 # 1rqlA.199.205 read from T0547.t06.many.frag # found chain 1rqlA in template set T0547 199 :GINSKFGLT 1rqlA 206 :LGSSELGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=90436 # 1qo7A.200.47 read from T0547.t06.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)S202 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. T0547 200 :IN 1qo7A 50 :AD T0547 203 :KFGLTS 1qo7A 53 :RFGITS Number of specific fragments extracted= 2 number of extra gaps= 1 total=90438 # 1knwA.200.159 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 200 :INSKFGLTS 1knwA 160 :ENSKHGIWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=90439 # 1lwbA.200.48 read from T0547.t06.many.frag # found chain 1lwbA in training set Warning: unaligning (T0547)F204 (1lwbA)F53 because G (3-10) conformation "forbidden" or filtered. T0547 200 :INSK 1lwbA 49 :PDNP T0547 205 :GLTS 1lwbA 54 :GFPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=90441 # 7odcA.200.165 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 204 :FGLTS 7odcA 170 :FGATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90442 # 1tx4A.200.4 read from T0547.t06.many.frag # found chain 1tx4A in training set T0547 200 :INSKFGLTS 1tx4A 41 :PNQQFGVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90443 # 1f1mA.200.106 read from T0547.t06.many.frag # found chain 1f1mA in training set Warning: unaligning (T0547)G205 (1f1mA)G149 because N (gamma') conformation "forbidden" or filtered. T0547 200 :INSKF 1f1mA 144 :DLGKE T0547 206 :LTS 1f1mA 150 :VTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=90445 # 1qvzA.200.19 read from T0547.t06.many.frag # found chain 1qvzA in template set Warning: unaligning (T0547)I200 (1qvzA)D20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N201 (1qvzA)G21 because T (delta_L) conformation "forbidden" or filtered. T0547 202 :SKFGLTS 1qvzA 22 :MKTGVFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=90446 # 1rv9A.200.48 read from T0547.t06.many.frag # found chain 1rv9A in training set T0547 200 :INSKFGLTS 1rv9A 49 :LGTHVGDNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=90447 # 1k47A.200.99 read from T0547.t06.many.frag # found chain 1k47A in template set T0547 200 :INSKFGLTS 1k47A 98 :EGKKFGLGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90448 # 1jfxA.200.104 read from T0547.t06.many.frag # found chain 1jfxA in training set Warning: unaligning (T0547)I200 (1jfxA)G105 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1jfxA)Y109 because L (left) conformation "forbidden" or filtered. T0547 201 :NSK 1jfxA 106 :AMC T0547 205 :GLTS 1jfxA 110 :GLST Number of specific fragments extracted= 2 number of extra gaps= 2 total=90450 # 1s95A.200.188 read from T0547.t06.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)I200 because of BadResidue code BAD_PEPTIDE in next template residue (1s95A)F356 Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 202 :SKFGLTS 1s95A 357 :SEDGVTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=90451 # 1bo1A.200.105 read from T0547.t06.many.frag # found chain 1bo1A in template set T0547 200 :INSKFGLTS 1bo1A 106 :LRERFGIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90452 # 1ta0A.200.115 read from T0547.t06.many.frag # found chain 1ta0A in template set T0547 200 :INSKFGLTS 1ta0A 191 :DLSRLGRDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90453 # 1o82A.200.0 read from T0547.t06.many.frag # found chain 1o82A in training set Warning: unaligning (T0547)I200 because first residue in template chain is (1o82A)M1 Warning: unaligning (T0547)K203 (1o82A)E4 because G (3-10) conformation "forbidden" or filtered. T0547 201 :NS 1o82A 2 :AK T0547 204 :FGLTS 1o82A 5 :FGIPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=90455 # 1rcqA.200.125 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)S202 (1rcqA)H128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1rcqA)G131 because S (epsilon) conformation "forbidden" or filtered. T0547 200 :IN 1rcqA 126 :GM T0547 203 :KF 1rcqA 129 :RV T0547 206 :LTS 1rcqA 132 :FFP Number of specific fragments extracted= 3 number of extra gaps= 2 total=90458 # 1jkoC.200.26 read from T0547.t06.many.frag # found chain 1jkoC in template set T0547 200 :INSKFGLTS 1jkoC 165 :LAIIFGIGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90459 # 1vquA.200.161 read from T0547.t06.many.frag # found chain 1vquA in template set Warning: unaligning (T0547)K203 (1vquA)N153 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vquA)G155 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vquA)G155 T0547 200 :INS 1vquA 150 :LGV T0547 206 :LTS 1vquA 156 :ASP Number of specific fragments extracted= 2 number of extra gaps= 1 total=90461 # 1in0A.200.95 read from T0547.t06.many.frag # found chain 1in0A in template set T0547 200 :INSKFGLTS 1in0A 96 :IKLKQGIET Number of specific fragments extracted= 1 number of extra gaps= 0 total=90462 # 1z3xA.200.92 read from T0547.t06.many.frag # found chain 1z3xA in training set T0547 200 :INSKFGLTS 1z3xA 90 :LRSDRGVDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=90463 # 2b0lA.200.48 read from T0547.t06.many.frag # found chain 2b0lA in template set T0547 200 :INSKFGLTS 2b0lA 206 :IADRVGITR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90464 # 1rqlA.200.206 read from T0547.t06.many.frag # found chain 1rqlA in template set T0547 200 :INSKFGLTS 1rqlA 207 :GSSELGLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90465 # 1xmtA.200.44 read from T0547.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)T207 (1xmtA)G52 because T (delta_L) conformation "forbidden" or filtered. T0547 200 :INSKFGL 1xmtA 45 :PSFKRGL T0547 208 :S 1xmtA 53 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=90467 # 1ppjB.200.179 read from T0547.t06.many.frag # found chain 1ppjB in template set Warning: unaligning (T0547)F204 (1ppjB)G184 because T (delta_L) conformation "forbidden" or filtered. T0547 200 :INSK 1ppjB 180 :DYRI T0547 205 :GLTS 1ppjB 185 :KVTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=90469 # 1tv9A.200.99 read from T0547.t06.many.frag # found chain 1tv9A in template set T0547 200 :INSKFGLTS 1tv9A 100 :LTRVSGIGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=90470 # 1rw1A.200.97 read from T0547.t06.many.frag # found chain 1rw1A in training set Warning: unaligning (T0547)I200 (1rw1A)G99 because G (3-10) conformation "forbidden" or filtered. T0547 201 :NSKFGLTS 1rw1A 100 :RTLVGFKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=90471 # 1zx4A.200.29 read from T0547.t06.many.frag # found chain 1zx4A in template set T0547 200 :INSKFGLTS 1zx4A 171 :IAAKEGLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=90472 # 1lml.200.90 read from T0547.t06.many.frag # found chain 1lml in template set Warning: unaligning (T0547)I200 (1lml)I190 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1lml)K195 because N (gamma') conformation "forbidden" or filtered. T0547 201 :NSKF 1lml 191 :CGDF T0547 206 :LTS 1lml 196 :VPQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=90474 1oeyA expands to /projects/compbio/data/pdb/1oey.pdb.gz 1oeyA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1oeyA.200.17 read from T0547.t06.many.frag # adding 1oeyA to template set # found chain 1oeyA in template set T0547 200 :INSKFGLTS 1oeyA 364 :MKTQPGLPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=90475 # 1ft5A.200.67 read from T0547.t06.many.frag # found chain 1ft5A in training set Warning: unaligning (T0547)N201 (1ft5A)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K203 (1ft5A)K71 because P (beta_P) conformation "forbidden" or filtered. T0547 200 :I 1ft5A 68 :F T0547 202 :S 1ft5A 70 :Q T0547 204 :FGLTS 1ft5A 72 :GGYTI Number of specific fragments extracted= 3 number of extra gaps= 2 total=90478 # 1yrtA.200.81 read from T0547.t06.many.frag # found chain 1yrtA in template set Warning: unaligning (T0547)I200 (1yrtA)L82 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 because of BadResidue code BAD_PEPTIDE in next template residue (1yrtA)G87 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE at template residue (1yrtA)G87 T0547 201 :NSK 1yrtA 83 :SKL T0547 206 :LTS 1yrtA 88 :RAP Number of specific fragments extracted= 2 number of extra gaps= 2 total=90480 # 1qo7A.201.48 read from T0547.t06.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)S202 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 (1qo7A)F54 because G (3-10) conformation "forbidden" or filtered. T0547 201 :N 1qo7A 51 :D T0547 203 :K 1qo7A 53 :R T0547 205 :GLTST 1qo7A 55 :GITSE Number of specific fragments extracted= 3 number of extra gaps= 2 total=90483 # 1knwA.201.160 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N201 (1knwA)N161 because G (3-10) conformation "forbidden" or filtered. T0547 202 :SKFGLTST 1knwA 162 :SKHGIWYT Number of specific fragments extracted= 1 number of extra gaps= 1 total=90484 # 7odcA.201.166 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 T0547 204 :FGLTST 7odcA 170 :FGATLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90485 # 1f1mA.201.107 read from T0547.t06.many.frag # found chain 1f1mA in training set Warning: unaligning (T0547)N201 (1f1mA)L145 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1f1mA)G149 because N (gamma') conformation "forbidden" or filtered. T0547 202 :SKF 1f1mA 146 :GKE T0547 206 :LTST 1f1mA 150 :VTDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=90487 # 1lwbA.201.49 read from T0547.t06.many.frag # found chain 1lwbA in training set Warning: unaligning (T0547)N201 (1lwbA)D50 because P (beta_P) conformation "forbidden" or filtered. T0547 202 :SKFGLTST 1lwbA 51 :NPFGFPFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=90488 # 1tx4A.201.5 read from T0547.t06.many.frag # found chain 1tx4A in training set Warning: unaligning (T0547)N201 (1tx4A)N42 because G (3-10) conformation "forbidden" or filtered. T0547 202 :SKFGLTST 1tx4A 43 :QQFGVSLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=90489 # 1rv9A.201.49 read from T0547.t06.many.frag # found chain 1rv9A in training set T0547 201 :NSKFGLTST 1rv9A 50 :GTHVGDNPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90490 # 1rcqA.201.126 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)S202 (1rcqA)H128 because L (left) conformation "forbidden" or filtered. T0547 201 :N 1rcqA 127 :M T0547 203 :KFGLTST 1rcqA 129 :RVGFFPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=90492 # 1jfxA.201.105 read from T0547.t06.many.frag # found chain 1jfxA in training set T0547 201 :NSKFGLTST 1jfxA 106 :AMCYGLSTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=90493 # 1ppjB.201.180 read from T0547.t06.many.frag # found chain 1ppjB in template set Warning: unaligning (T0547)F204 (1ppjB)G184 because T (delta_L) conformation "forbidden" or filtered. T0547 201 :NSK 1ppjB 181 :YRI T0547 205 :GLTST 1ppjB 185 :KVTPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=90495 # 1tv9A.201.100 read from T0547.t06.many.frag # found chain 1tv9A in template set T0547 201 :NSKFGLTST 1tv9A 101 :TRVSGIGPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90496 # 1s95A.201.189 read from T0547.t06.many.frag # found chain 1s95A in training set Warning: unaligning (T0547)N201 because of BadResidue code BAD_PEPTIDE at template residue (1s95A)F356 T0547 202 :SKFGLTST 1s95A 357 :SEDGVTLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=90497 # 1yrtA.201.82 read from T0547.t06.many.frag # found chain 1yrtA in template set Warning: unaligning (T0547)F204 because of BadResidue code BAD_PEPTIDE in next template residue (1yrtA)G87 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE at template residue (1yrtA)G87 T0547 201 :NSK 1yrtA 83 :SKL T0547 206 :LTST 1yrtA 88 :RAPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=90499 # 1jkoC.201.27 read from T0547.t06.many.frag # found chain 1jkoC in template set T0547 201 :NSKFGLTST 1jkoC 166 :AIIFGIGVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90500 # 1vquA.201.162 read from T0547.t06.many.frag # found chain 1vquA in template set Warning: unaligning (T0547)F204 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vquA)G155 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vquA)G155 T0547 201 :NSK 1vquA 151 :GVN T0547 206 :LTST 1vquA 156 :ASPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=90502 # 1u24A.201.142 read from T0547.t06.many.frag # found chain 1u24A in template set T0547 201 :NSKFGLTST 1u24A 143 :WANLGKSQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=90503 # 1o82A.201.1 read from T0547.t06.many.frag # found chain 1o82A in training set T0547 201 :NSKFGLTST 1o82A 2 :AKEFGIPAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90504 # 1zx4A.201.30 read from T0547.t06.many.frag # found chain 1zx4A in template set T0547 201 :NSKFGLTST 1zx4A 172 :AAKEGLSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90505 # 1in0A.201.96 read from T0547.t06.many.frag # found chain 1in0A in template set T0547 201 :NSKFGLTST 1in0A 97 :KLKQGIETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90506 # 1rqlA.201.207 read from T0547.t06.many.frag # found chain 1rqlA in template set Warning: unaligning (T0547)N201 (1rqlA)S208 because P (beta_P) conformation "forbidden" or filtered. T0547 202 :SKFGLTST 1rqlA 209 :SELGLTEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=90507 # 1qvzA.201.20 read from T0547.t06.many.frag # found chain 1qvzA in template set Warning: unaligning (T0547)N201 (1qvzA)G21 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S202 (1qvzA)M22 because P (beta_P) conformation "forbidden" or filtered. T0547 203 :KFGLTST 1qvzA 23 :KTGVFVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=90508 # 1al3.201.178 read from T0547.t06.many.frag # found chain 1al3 in training set Warning: unaligning (T0547)F204 (1al3)G182 because T (delta_L) conformation "forbidden" or filtered. T0547 201 :NSK 1al3 179 :ATK T0547 205 :GLTST 1al3 183 :SVSIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=90510 # 1bo1A.201.106 read from T0547.t06.many.frag # found chain 1bo1A in template set T0547 201 :NSKFGLTST 1bo1A 107 :RERFGIDDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=90511 # 2b0lA.201.49 read from T0547.t06.many.frag # found chain 2b0lA in template set T0547 201 :NSKFGLTST 2b0lA 207 :ADRVGITRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90512 # 1vkeA.201.81 read from T0547.t06.many.frag # found chain 1vkeA in training set T0547 201 :NSKFGLTST 1vkeA 70 :CVQEGASDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90513 # 1ie9A.201.131 read from T0547.t06.many.frag # found chain 1ie9A in training set T0547 201 :NSKFGLTST 1ie9A 300 :VTKAGHSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90514 # 1nkiA.201.63 read from T0547.t06.many.frag # found chain 1nkiA in training set Warning: unaligning (T0547)N201 (1nkiA)H64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1nkiA)G68 because P (beta_P) conformation "forbidden" or filtered. T0547 202 :SKF 1nkiA 65 :YAF T0547 206 :LTST 1nkiA 69 :IAAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=90516 # 2erbA.201.26 read from T0547.t06.many.frag # found chain 2erbA in training set T0547 201 :NSKFGLTST 2erbA 27 :LGKTGVTEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90517 # 1z3xA.201.93 read from T0547.t06.many.frag # found chain 1z3xA in training set Warning: unaligning (T0547)F204 (1z3xA)R94 because G (3-10) conformation "forbidden" or filtered. T0547 201 :NSK 1z3xA 91 :RSD T0547 205 :GLTST 1z3xA 95 :GVDYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=90519 # 1t8kA.201.28 read from T0547.t06.many.frag # found chain 1t8kA in training set T0547 201 :NSKFGLTST 1t8kA 29 :VEDLGADSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90520 # 1qo7A.202.49 read from T0547.t06.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)S202 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. T0547 203 :KFGLTSTE 1qo7A 53 :RFGITSEW Number of specific fragments extracted= 1 number of extra gaps= 1 total=90521 # 7odcA.202.167 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)G205 (7odcA)G171 because S (epsilon) conformation "forbidden" or filtered. T0547 204 :F 7odcA 170 :F T0547 206 :LTSTE 7odcA 172 :ATLKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=90523 # 1f1mA.202.108 read from T0547.t06.many.frag # found chain 1f1mA in training set Warning: unaligning (T0547)G205 (1f1mA)G149 because N (gamma') conformation "forbidden" or filtered. T0547 202 :SKF 1f1mA 146 :GKE T0547 206 :LTSTE 1f1mA 150 :VTDDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=90525 # 1rcqA.202.127 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 202 :SKFGLTSTE 1rcqA 128 :HRVGFFPED Number of specific fragments extracted= 1 number of extra gaps= 0 total=90526 # 1rv9A.202.50 read from T0547.t06.many.frag # found chain 1rv9A in training set T0547 202 :SKFGLTSTE 1rv9A 51 :THVGDNPEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90527 # 1knwA.202.161 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)T209 (1knwA)T169 because G (3-10) conformation "forbidden" or filtered. T0547 202 :SKFGLTS 1knwA 162 :SKHGIWY T0547 210 :E 1knwA 170 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=90529 # 1vkeA.202.82 read from T0547.t06.many.frag # found chain 1vkeA in training set T0547 202 :SKFGLTSTE 1vkeA 71 :VQEGASDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90530 # 1jfxA.202.106 read from T0547.t06.many.frag # found chain 1jfxA in training set Warning: unaligning (T0547)F204 (1jfxA)Y109 because L (left) conformation "forbidden" or filtered. T0547 202 :SK 1jfxA 107 :MC T0547 205 :GLTSTE 1jfxA 110 :GLSTTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=90532 # 1vquA.202.163 read from T0547.t06.many.frag # found chain 1vquA in template set Warning: unaligning (T0547)K203 (1vquA)N153 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)F204 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vquA)G155 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vquA)G155 T0547 202 :S 1vquA 152 :V T0547 206 :LTSTE 1vquA 156 :ASPEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=90534 # 1s95A.202.190 read from T0547.t06.many.frag # found chain 1s95A in training set T0547 202 :SKFGLTSTE 1s95A 357 :SEDGVTLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90535 # 1u24A.202.143 read from T0547.t06.many.frag # found chain 1u24A in template set T0547 202 :SKFGLTSTE 1u24A 144 :ANLGKSQHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90536 # 1yrtA.202.83 read from T0547.t06.many.frag # found chain 1yrtA in template set Warning: unaligning (T0547)F204 because of BadResidue code BAD_PEPTIDE in next template residue (1yrtA)G87 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE at template residue (1yrtA)G87 T0547 202 :SK 1yrtA 84 :KL T0547 206 :LTSTE 1yrtA 88 :RAPEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=90538 # 1tv9A.202.101 read from T0547.t06.many.frag # found chain 1tv9A in template set T0547 202 :SKFGLTSTE 1tv9A 102 :RVSGIGPSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90539 # 1zx4A.202.31 read from T0547.t06.many.frag # found chain 1zx4A in template set T0547 202 :SKFGLTSTE 1zx4A 173 :AKEGLSQAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90540 # 1tbfA.202.188 read from T0547.t06.many.frag # found chain 1tbfA in training set Warning: unaligning (T0547)G205 (1tbfA)G703 because G (3-10) conformation "forbidden" or filtered. T0547 202 :SKF 1tbfA 700 :ILS T0547 206 :LTSTE 1tbfA 704 :LSIEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=90542 # 1nkiA.202.64 read from T0547.t06.many.frag # found chain 1nkiA in training set T0547 202 :SKFGLTSTE 1nkiA 65 :YAFGIAAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90543 # 1ppjB.202.181 read from T0547.t06.many.frag # found chain 1ppjB in template set Warning: unaligning (T0547)K203 (1ppjB)I183 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1ppjB)K185 because G (3-10) conformation "forbidden" or filtered. T0547 202 :S 1ppjB 182 :R T0547 204 :F 1ppjB 184 :G T0547 206 :LTSTE 1ppjB 186 :VTPVE Number of specific fragments extracted= 3 number of extra gaps= 2 total=90546 # 1zavA.202.28 read from T0547.t06.many.frag # found chain 1zavA in template set T0547 202 :SKFGLTSTE 1zavA 28 :DFLGFTVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90547 # 2aebA.202.247 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)F204 (2aebA)G250 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (2aebA)G251 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T209 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0547)E210 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 T0547 202 :SK 2aebA 248 :VV T0547 206 :LTS 2aebA 252 :LTY Number of specific fragments extracted= 2 number of extra gaps= 2 total=90549 # 1xg4A.202.126 read from T0547.t06.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)S202 (1xg4A)N128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1xg4A)I131 because E (beta_S) conformation "forbidden" or filtered. T0547 203 :KF 1xg4A 129 :KA T0547 206 :LTSTE 1xg4A 132 :VSKEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=90551 # 1lwbA.202.50 read from T0547.t06.many.frag # found chain 1lwbA in training set Warning: unaligning (T0547)F204 (1lwbA)F53 because G (3-10) conformation "forbidden" or filtered. T0547 202 :SK 1lwbA 51 :NP T0547 205 :GLTSTE 1lwbA 54 :GFPFNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=90553 # 1o82A.202.2 read from T0547.t06.many.frag # found chain 1o82A in training set T0547 202 :SKFGLTSTE 1o82A 3 :KEFGIPAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90554 # 1jkoC.202.28 read from T0547.t06.many.frag # found chain 1jkoC in template set T0547 202 :SKFGLTSTE 1jkoC 167 :IIFGIGVST Number of specific fragments extracted= 1 number of extra gaps= 0 total=90555 # 1lvaA.202.164 read from T0547.t06.many.frag # found chain 1lvaA in template set Warning: unaligning (T0547)F204 (1lvaA)F543 because G (3-10) conformation "forbidden" or filtered. T0547 202 :SK 1lvaA 541 :GS T0547 205 :GLTSTE 1lvaA 544 :NLDPSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=90557 # 1wvfA.202.7 read from T0547.t06.many.frag # found chain 1wvfA in training set T0547 202 :SKFGLTSTE 1wvfA 9 :LPKGVTQGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90558 # 1tx4A.202.6 read from T0547.t06.many.frag # found chain 1tx4A in training set T0547 202 :SKFGLTSTE 1tx4A 43 :QQFGVSLQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=90559 # 1jkeA.202.92 read from T0547.t06.many.frag # found chain 1jkeA in training set T0547 202 :SKFGLTSTE 1jkeA 93 :FSKGASPDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90560 # 2b0lA.202.50 read from T0547.t06.many.frag # found chain 2b0lA in template set T0547 202 :SKFGLTSTE 2b0lA 208 :DRVGITRSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90561 # 1oeyA.202.19 read from T0547.t06.many.frag # found chain 1oeyA in template set T0547 202 :SKFGLTSTE 1oeyA 366 :TQPGLPYSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=90562 # 2erbA.202.27 read from T0547.t06.many.frag # found chain 2erbA in training set T0547 202 :SKFGLTSTE 2erbA 28 :GKTGVTEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90563 # 7odcA.203.168 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)K169 Warning: unaligning (T0547)G205 (7odcA)G171 because S (epsilon) conformation "forbidden" or filtered. T0547 204 :F 7odcA 170 :F T0547 206 :LTSTEL 7odcA 172 :ATLKTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=90565 # 1rcqA.203.128 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 203 :KFGLTSTEL 1rcqA 129 :RVGFFPEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=90566 # 1f1mA.203.109 read from T0547.t06.many.frag # found chain 1f1mA in training set T0547 203 :KFGLTSTEL 1f1mA 147 :KEGVTDDNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90567 # 1rv9A.203.51 read from T0547.t06.many.frag # found chain 1rv9A in training set T0547 203 :KFGLTSTEL 1rv9A 52 :HVGDNPEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90568 # 1qo7A.203.50 read from T0547.t06.many.frag # found chain 1qo7A in training set T0547 203 :KFGLTSTEL 1qo7A 53 :RFGITSEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90569 # 1s95A.203.191 read from T0547.t06.many.frag # found chain 1s95A in training set T0547 203 :KFGLTSTEL 1s95A 358 :EDGVTLDDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90570 # 1vkeA.203.83 read from T0547.t06.many.frag # found chain 1vkeA in training set T0547 203 :KFGLTSTEL 1vkeA 72 :QEGASDEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90571 # 1jkeA.203.93 read from T0547.t06.many.frag # found chain 1jkeA in training set Warning: unaligning (T0547)G205 (1jkeA)G96 because P (beta_P) conformation "forbidden" or filtered. T0547 203 :KF 1jkeA 94 :SK T0547 206 :LTSTEL 1jkeA 97 :ASPDRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=90573 # 1tv9A.203.102 read from T0547.t06.many.frag # found chain 1tv9A in template set T0547 203 :KFGLTSTEL 1tv9A 103 :VSGIGPSAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90574 # 1nkiA.203.65 read from T0547.t06.many.frag # found chain 1nkiA in training set T0547 203 :KFGLTSTEL 1nkiA 66 :AFGIAAADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=90575 # 2aebA.203.248 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)F204 (2aebA)G250 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T209 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0547)E210 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 T0547 203 :K 2aebA 249 :V T0547 205 :GLTS 2aebA 251 :GLTY T0547 211 :L 2aebA 257 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=90578 # 1zavA.203.29 read from T0547.t06.many.frag # found chain 1zavA in template set T0547 203 :KFGLTSTEL 1zavA 29 :FLGFTVADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90579 # 1lvaA.203.165 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 203 :KFGLTSTEL 1lvaA 542 :SFNLDPSEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90580 # 1xg4A.203.127 read from T0547.t06.many.frag # found chain 1xg4A in training set T0547 203 :KFGLTSTEL 1xg4A 129 :KAIVSKEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=90581 # 1jfxA.203.107 read from T0547.t06.many.frag # found chain 1jfxA in training set T0547 203 :KFGLTSTEL 1jfxA 108 :CYGLSTTQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=90582 # 1u24A.203.144 read from T0547.t06.many.frag # found chain 1u24A in template set T0547 203 :KFGLTSTEL 1u24A 145 :NLGKSQHEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90583 # 1tbfA.203.189 read from T0547.t06.many.frag # found chain 1tbfA in training set Warning: unaligning (T0547)G205 (1tbfA)G703 because G (3-10) conformation "forbidden" or filtered. T0547 203 :KF 1tbfA 701 :LS T0547 206 :LTSTEL 1tbfA 704 :LSIEEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=90585 # 1knwA.203.162 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 203 :KFGLTSTEL 1knwA 163 :KHGIWYTDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90586 # 1ofcX.203.139 read from T0547.t06.many.frag # found chain 1ofcX in template set T0547 203 :KFGLTSTEL 1ofcX 827 :VEGKTPEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90587 # 2ajtA.203.51 read from T0547.t06.many.frag # found chain 2ajtA in template set Warning: unaligning (T0547)G205 (2ajtA)G54 because N (gamma') conformation "forbidden" or filtered. T0547 203 :KF 2ajtA 52 :PL T0547 206 :LTSTEL 2ajtA 55 :TTPDEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=90589 # 1vquA.203.164 read from T0547.t06.many.frag # found chain 1vquA in template set Warning: unaligning (T0547)F204 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vquA)G155 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vquA)G155 T0547 203 :K 1vquA 153 :N T0547 206 :LTSTEL 1vquA 156 :ASPEKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=90591 # 1o82A.203.3 read from T0547.t06.many.frag # found chain 1o82A in training set Warning: unaligning (T0547)F204 (1o82A)F5 because G (3-10) conformation "forbidden" or filtered. T0547 203 :K 1o82A 4 :E T0547 205 :GLTSTEL 1o82A 6 :GIPAAVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=90593 # 1jkoC.203.29 read from T0547.t06.many.frag # found chain 1jkoC in template set T0547 203 :KFGLTSTEL 1jkoC 168 :IFGIGVSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90594 # 2b0lA.203.51 read from T0547.t06.many.frag # found chain 2b0lA in template set T0547 203 :KFGLTSTEL 2b0lA 209 :RVGITRSVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90595 # 1t8kA.203.30 read from T0547.t06.many.frag # found chain 1t8kA in training set Warning: unaligning (T0547)F204 (1t8kA)L32 because G (3-10) conformation "forbidden" or filtered. T0547 203 :K 1t8kA 31 :D T0547 205 :GLTSTEL 1t8kA 33 :GADSLDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=90597 # 1oeyA.203.20 read from T0547.t06.many.frag # found chain 1oeyA in template set Warning: unaligning (T0547)K203 (1oeyA)Q367 because P (beta_P) conformation "forbidden" or filtered. T0547 204 :FGLTSTEL 1oeyA 368 :PGLPYSQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=90598 # 1svsA.203.56 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)F204 (1svsA)A59 because L (left) conformation "forbidden" or filtered. T0547 203 :K 1svsA 58 :E T0547 205 :GLTSTEL 1svsA 60 :GYSEEEC Number of specific fragments extracted= 2 number of extra gaps= 1 total=90600 # 1v4sA.203.11 read from T0547.t06.many.frag # found chain 1v4sA in template set Warning: unaligning (T0547)G205 (1v4sA)Q24 because P (beta_P) conformation "forbidden" or filtered. T0547 203 :KF 1v4sA 22 :EF T0547 206 :LTSTEL 1v4sA 25 :LQEEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=90602 # 1al3.203.180 read from T0547.t06.many.frag # found chain 1al3 in training set T0547 203 :KFGLTSTEL 1al3 181 :KGSVSIEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90603 # 1yrtA.203.84 read from T0547.t06.many.frag # found chain 1yrtA in template set Warning: unaligning (T0547)F204 because of BadResidue code BAD_PEPTIDE in next template residue (1yrtA)G87 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE at template residue (1yrtA)G87 T0547 203 :K 1yrtA 85 :L T0547 206 :LTSTEL 1yrtA 88 :RAPEVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=90605 # 7odcA.204.169 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 204 :FGLTSTELI 7odcA 170 :FGATLKTSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90606 # 1rcqA.204.129 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 204 :FGLTSTELI 1rcqA 130 :VGFFPEDFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90607 # 1f1mA.204.110 read from T0547.t06.many.frag # found chain 1f1mA in training set T0547 204 :FGLTSTELI 1f1mA 148 :EGVTDDNAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90608 # 1rv9A.204.52 read from T0547.t06.many.frag # found chain 1rv9A in training set T0547 204 :FGLTSTELI 1rv9A 53 :VGDNPEAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90609 # 1vquA.204.165 read from T0547.t06.many.frag # found chain 1vquA in template set Warning: unaligning (T0547)F204 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vquA)G155 Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vquA)G155 T0547 206 :LTSTELI 1vquA 156 :ASPEKVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=90610 # 1vkeA.204.84 read from T0547.t06.many.frag # found chain 1vkeA in training set T0547 204 :FGLTSTELI 1vkeA 73 :EGASDEEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=90611 # 1tv9A.204.103 read from T0547.t06.many.frag # found chain 1tv9A in template set T0547 204 :FGLTSTELI 1tv9A 104 :SGIGPSAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90612 # 1lvaA.204.166 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 204 :FGLTSTELI 1lvaA 543 :FNLDPSELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90613 # 2aebA.204.249 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)F204 (2aebA)G250 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (2aebA)G251 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T209 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0547)E210 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 T0547 206 :LTS 2aebA 252 :LTY T0547 211 :LI 2aebA 257 :GL Number of specific fragments extracted= 2 number of extra gaps= 2 total=90615 # 1s95A.204.192 read from T0547.t06.many.frag # found chain 1s95A in training set T0547 204 :FGLTSTELI 1s95A 359 :DGVTLDDIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90616 # 1zavA.204.30 read from T0547.t06.many.frag # found chain 1zavA in template set T0547 204 :FGLTSTELI 1zavA 30 :LGFTVADLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=90617 # 1o82A.204.4 read from T0547.t06.many.frag # found chain 1o82A in training set T0547 204 :FGLTSTELI 1o82A 5 :FGIPAAVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90618 # 1tfzA.204.99 read from T0547.t06.many.frag # found chain 1tfzA in training set T0547 204 :FGLTSTELI 1tfzA 100 :PSFDHGSCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90619 # 1xg4A.204.128 read from T0547.t06.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)G205 (1xg4A)I131 because E (beta_S) conformation "forbidden" or filtered. T0547 204 :F 1xg4A 130 :A T0547 206 :LTSTELI 1xg4A 132 :VSKEEMV Number of specific fragments extracted= 2 number of extra gaps= 1 total=90621 # 1wvfA.204.9 read from T0547.t06.many.frag # found chain 1wvfA in training set T0547 204 :FGLTSTELI 1wvfA 11 :KGVTQGEFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=90622 # 2ajtA.204.52 read from T0547.t06.many.frag # found chain 2ajtA in template set T0547 204 :FGLTSTELI 2ajtA 53 :LGTTPDEIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=90623 # 1nkiA.204.66 read from T0547.t06.many.frag # found chain 1nkiA in training set T0547 204 :FGLTSTELI 1nkiA 67 :FGIAAADFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90624 # 1oeyA.204.21 read from T0547.t06.many.frag # found chain 1oeyA in template set T0547 204 :FGLTSTELI 1oeyA 368 :PGLPYSQVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90625 # 1tbfA.204.190 read from T0547.t06.many.frag # found chain 1tbfA in training set T0547 204 :FGLTSTELI 1tbfA 702 :SGLSIEEYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90626 # 1xo0A.204.44 read from T0547.t06.many.frag # found chain 1xo0A in template set Warning: unaligning (T0547)G205 (1xo0A)P65 because C (cis) conformation "forbidden" or filtered. T0547 204 :F 1xo0A 64 :F T0547 206 :LTSTELI 1xo0A 66 :AEPEDVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=90628 # 1v4sA.204.12 read from T0547.t06.many.frag # found chain 1v4sA in template set Warning: unaligning (T0547)G205 (1v4sA)Q24 because P (beta_P) conformation "forbidden" or filtered. T0547 204 :F 1v4sA 23 :F T0547 206 :LTSTELI 1v4sA 25 :LQEEDLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=90630 # 1ydxA.204.147 read from T0547.t06.many.frag # found chain 1ydxA in template set T0547 204 :FGLTSTELI 1ydxA 125 :QNIRISDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90631 # 1svsA.204.57 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)F204 (1svsA)A59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G205 (1svsA)G60 because S (epsilon) conformation "forbidden" or filtered. T0547 206 :LTSTELI 1svsA 61 :YSEEECK Number of specific fragments extracted= 1 number of extra gaps= 1 total=90632 # 1jkeA.204.94 read from T0547.t06.many.frag # found chain 1jkeA in training set Warning: unaligning (T0547)G205 (1jkeA)G96 because P (beta_P) conformation "forbidden" or filtered. T0547 204 :F 1jkeA 95 :K T0547 206 :LTSTELI 1jkeA 97 :ASPDRAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=90634 # 1f74A.204.51 read from T0547.t06.many.frag # found chain 1f74A in training set T0547 204 :FGLTSTELI 1f74A 52 :FMLSTEEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90635 # 1pmmA.204.186 read from T0547.t06.many.frag # found chain 1pmmA in template set T0547 204 :FGLTSTELI 1pmmA 187 :LFMDPKRMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90636 # 1ofcX.204.140 read from T0547.t06.many.frag # found chain 1ofcX in template set T0547 204 :FGLTSTELI 1ofcX 828 :EGKTPEEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90637 # 1jkoC.204.30 read from T0547.t06.many.frag # found chain 1jkoC in template set T0547 204 :FGLTSTELI 1jkoC 169 :FGIGVSTLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=90638 # 1u24A.204.145 read from T0547.t06.many.frag # found chain 1u24A in template set T0547 204 :FGLTSTELI 1u24A 146 :LGKSQHEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90639 # 1uarA.204.145 read from T0547.t06.many.frag # found chain 1uarA in training set T0547 204 :FGLTSTELI 1uarA 146 :IRAYRDDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90640 # 1rcqA.205.130 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 205 :GLTSTELIE 1rcqA 131 :GFFPEDFRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90641 # 1rv9A.205.53 read from T0547.t06.many.frag # found chain 1rv9A in training set T0547 205 :GLTSTELIE 1rv9A 54 :GDNPEAVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90642 # 1lvaA.205.167 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 205 :GLTSTELIE 1lvaA 544 :NLDPSELEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90643 # 1vquA.205.166 read from T0547.t06.many.frag # found chain 1vquA in template set Warning: unaligning (T0547)G205 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vquA)G155 T0547 206 :LTSTELIE 1vquA 156 :ASPEKVQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=90644 # 1zavA.205.31 read from T0547.t06.many.frag # found chain 1zavA in template set T0547 205 :GLTSTELIE 1zavA 31 :GFTVADLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90645 # 2ajtA.205.53 read from T0547.t06.many.frag # found chain 2ajtA in template set Warning: unaligning (T0547)G205 (2ajtA)G54 because N (gamma') conformation "forbidden" or filtered. T0547 206 :LTSTELIE 2ajtA 55 :TTPDEITA Number of specific fragments extracted= 1 number of extra gaps= 1 total=90646 # 1ofcX.205.141 read from T0547.t06.many.frag # found chain 1ofcX in template set T0547 205 :GLTSTELIE 1ofcX 829 :GKTPEEVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90647 # 1xg4A.205.129 read from T0547.t06.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)G205 (1xg4A)I131 because E (beta_S) conformation "forbidden" or filtered. T0547 206 :LTSTELIE 1xg4A 132 :VSKEEMVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=90648 # 1tv9A.205.104 read from T0547.t06.many.frag # found chain 1tv9A in template set T0547 205 :GLTSTELIE 1tv9A 105 :GIGPSAARK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90649 # 1ydxA.205.148 read from T0547.t06.many.frag # found chain 1ydxA in template set T0547 205 :GLTSTELIE 1ydxA 126 :NIRISDLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90650 # 1uarA.205.146 read from T0547.t06.many.frag # found chain 1uarA in training set T0547 205 :GLTSTELIE 1uarA 147 :RAYRDDVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90651 # 1s95A.205.193 read from T0547.t06.many.frag # found chain 1s95A in training set T0547 205 :GLTSTELIE 1s95A 360 :GVTLDDIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90652 # 1vkeA.205.85 read from T0547.t06.many.frag # found chain 1vkeA in training set T0547 205 :GLTSTELIE 1vkeA 74 :GASDEEIFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90653 # 1gk9B.205.275 read from T0547.t06.many.frag # found chain 1gk9B in training set Warning: unaligning (T0547)G205 (1gk9B)R276 because E (beta_S) conformation "forbidden" or filtered. T0547 206 :LTSTELIE 1gk9B 277 :LTADQAWD Number of specific fragments extracted= 1 number of extra gaps= 1 total=90654 # 2cw6A.205.151 read from T0547.t06.many.frag # found chain 2cw6A in template set T0547 205 :GLTSTELIE 2cw6A 179 :KISPAKVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90655 # 2f02A.205.109 read from T0547.t06.many.frag # found chain 2f02A in template set T0547 205 :GLTSTELIE 2f02A 108 :TVSPEEISN Number of specific fragments extracted= 1 number of extra gaps= 0 total=90656 # 1vrmA.205.124 read from T0547.t06.many.frag # found chain 1vrmA in training set Warning: unaligning (T0547)G205 (1vrmA)V152 because N (gamma') conformation "forbidden" or filtered. T0547 206 :LTSTELIE 1vrmA 153 :PSREEIEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=90657 # 2a8eA.205.147 read from T0547.t06.many.frag # found chain 2a8eA in template set T0547 205 :GLTSTELIE 2a8eA 148 :EMDKEQLKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=90658 # 1f1mA.205.111 read from T0547.t06.many.frag # found chain 1f1mA in training set T0547 205 :GLTSTELIE 1f1mA 149 :GVTDDNAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90659 # 2aebA.205.250 read from T0547.t06.many.frag # found chain 2aebA in training set Warning: unaligning (T0547)T209 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0547)E210 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 T0547 205 :GLTS 2aebA 251 :GLTY T0547 211 :LIE 2aebA 257 :GLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=90661 # 1y9iA.205.21 read from T0547.t06.many.frag # found chain 1y9iA in training set T0547 205 :GLTSTELIE 1y9iA 22 :GVEIDDIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90662 # 2b8nA.205.218 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 205 :GLTSTELIE 2b8nA 207 :SSTSEDALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90663 # 1o12A.205.189 read from T0547.t06.many.frag # found chain 1o12A in template set T0547 205 :GLTSTELIE 1o12A 178 :IATFEEFMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90664 # 1tbfA.205.191 read from T0547.t06.many.frag # found chain 1tbfA in training set Warning: unaligning (T0547)G205 (1tbfA)G703 because G (3-10) conformation "forbidden" or filtered. T0547 206 :LTSTELIE 1tbfA 704 :LSIEEYKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=90665 # 1xo0A.205.45 read from T0547.t06.many.frag # found chain 1xo0A in template set Warning: unaligning (T0547)G205 (1xo0A)P65 because C (cis) conformation "forbidden" or filtered. T0547 206 :LTSTELIE 1xo0A 66 :AEPEDVRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=90666 # 7odcA.205.170 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 205 :GLTSTELIE 7odcA 171 :GATLKTSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90667 # 1nkiA.205.67 read from T0547.t06.many.frag # found chain 1nkiA in training set T0547 205 :GLTSTELIE 1nkiA 68 :GIAAADFAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90668 # 1f74A.205.52 read from T0547.t06.many.frag # found chain 1f74A in training set T0547 205 :GLTSTELIE 1f74A 53 :MLSTEEKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90669 # 1wvfA.205.10 read from T0547.t06.many.frag # found chain 1wvfA in training set T0547 205 :GLTSTELIE 1wvfA 12 :GVTQGEFNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90670 # 1tfzA.205.100 read from T0547.t06.many.frag # found chain 1tfzA in training set T0547 205 :GLTSTELIE 1tfzA 101 :SFDHGSCRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90671 # 1vkeA.206.86 read from T0547.t06.many.frag # found chain 1vkeA in training set T0547 206 :LTSTELIEA 1vkeA 75 :ASDEEIFEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90672 # 1rcqA.206.131 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 206 :LTSTELIEA 1rcqA 132 :FFPEDFRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90673 # 1lv7A.206.87 read from T0547.t06.many.frag # found chain 1lv7A in training set Warning: unaligning (T0547)T207 (1lv7A)G232 because S (epsilon) conformation "forbidden" or filtered. T0547 206 :L 1lv7A 231 :V T0547 208 :STELIEA 1lv7A 233 :ASRVRDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=90675 # 1xo0A.206.46 read from T0547.t06.many.frag # found chain 1xo0A in template set T0547 206 :LTSTELIEA 1xo0A 66 :AEPEDVRDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=90676 # 2cw6A.206.152 read from T0547.t06.many.frag # found chain 2cw6A in template set T0547 206 :LTSTELIEA 2cw6A 180 :ISPAKVAEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90677 # 1rv9A.206.54 read from T0547.t06.many.frag # found chain 1rv9A in training set T0547 206 :LTSTELIEA 1rv9A 55 :DNPEAVRRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=90678 # 2f02A.206.110 read from T0547.t06.many.frag # found chain 2f02A in template set T0547 206 :LTSTELIEA 2f02A 109 :VSPEEISNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=90679 # 1ppjB.206.185 read from T0547.t06.many.frag # found chain 1ppjB in template set T0547 206 :LTSTELIEA 1ppjB 186 :VTPVELHDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=90680 # 1k0fA.206.193 read from T0547.t06.many.frag # found chain 1k0fA in template set T0547 206 :LTSTELIEA 1k0fA 225 :ASAHDMQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90681 # 1uarA.206.147 read from T0547.t06.many.frag # found chain 1uarA in training set T0547 206 :LTSTELIEA 1uarA 148 :AYRDDVLEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=90682 # 1y9iA.206.22 read from T0547.t06.many.frag # found chain 1y9iA in training set T0547 206 :LTSTELIEA 1y9iA 23 :VEIDDIAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90683 # 1xg4A.206.130 read from T0547.t06.many.frag # found chain 1xg4A in training set T0547 206 :LTSTELIEA 1xg4A 132 :VSKEEMVDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90684 # 2aeuA.206.155 read from T0547.t06.many.frag # found chain 2aeuA in training set T0547 206 :LTSTELIEA 2aeuA 156 :IELENFKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90685 # 1q6zA.206.184 read from T0547.t06.many.frag # found chain 1q6zA in training set T0547 206 :LTSTELIEA 1q6zA 185 :LNDQDLDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90686 # 2ajtA.206.54 read from T0547.t06.many.frag # found chain 2ajtA in template set T0547 206 :LTSTELIEA 2ajtA 55 :TTPDEITAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90687 # 1ikpA.206.416 read from T0547.t06.many.frag # found chain 1ikpA in training set T0547 206 :LTSTELIEA 1ikpA 417 :WTVERLLQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90688 # 1y3nA.206.154 read from T0547.t06.many.frag # found chain 1y3nA in template set T0547 206 :LTSTELIEA 1y3nA 155 :QTVDELYTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90689 # 1vqoW.206.140 read from T0547.t06.many.frag # found chain 1vqoW in template set T0547 206 :LTSTELIEA 1vqoW 141 :HDTEGIDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90690 # 1ofcX.206.142 read from T0547.t06.many.frag # found chain 1ofcX in template set T0547 206 :LTSTELIEA 1ofcX 830 :KTPEEVIEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=90691 # 1wvfA.206.11 read from T0547.t06.many.frag # found chain 1wvfA in training set T0547 206 :LTSTELIEA 1wvfA 13 :VTQGEFNKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90692 # 1vpqA.206.223 read from T0547.t06.many.frag # found chain 1vpqA in template set T0547 206 :LTSTELIEA 1vpqA 212 :YSEEELKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90693 # 1v72A.206.156 read from T0547.t06.many.frag # found chain 1v72A in template set T0547 206 :LTSTELIEA 1v72A 157 :YTLDEIEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90694 # 2a8eA.206.148 read from T0547.t06.many.frag # found chain 2a8eA in template set T0547 206 :LTSTELIEA 2a8eA 149 :MDKEQLKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90695 # 1u55A.206.42 read from T0547.t06.many.frag # found chain 1u55A in training set T0547 206 :LTSTELIEA 1u55A 43 :IDDDEVRRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90696 # 1lvaA.206.168 read from T0547.t06.many.frag # found chain 1lvaA in template set T0547 206 :LTSTELIEA 1lvaA 545 :LDPSELEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90697 # 1colA.206.53 read from T0547.t06.many.frag # found chain 1colA in template set T0547 206 :LTSTELIEA 1colA 54 :RSFDDAMAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90698 # 1f74A.206.53 read from T0547.t06.many.frag # found chain 1f74A in training set T0547 206 :LTSTELIEA 1f74A 54 :LSTEEKKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90699 # 1v4sA.206.14 read from T0547.t06.many.frag # found chain 1v4sA in template set T0547 206 :LTSTELIEA 1v4sA 25 :LQEEDLKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90700 # 1zavA.206.32 read from T0547.t06.many.frag # found chain 1zavA in template set T0547 206 :LTSTELIEA 1zavA 32 :FTVADLTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90701 # 1wyzA.206.67 read from T0547.t06.many.frag # found chain 1wyzA in template set T0547 206 :LTSTELIEA 1wyzA 68 :TSPEDISGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=90702 # 1senA.207.134 read from T0547.t06.many.frag # found chain 1senA in training set T0547 207 :TSTELIEAV 1senA 143 :SAEQVVQGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=90703 # 1xg4A.207.131 read from T0547.t06.many.frag # found chain 1xg4A in training set T0547 207 :TSTELIEAV 1xg4A 133 :SKEEMVDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90704 # 1colA.207.54 read from T0547.t06.many.frag # found chain 1colA in template set T0547 207 :TSTELIEAV 1colA 55 :SFDDAMASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90705 # 1uslA.207.123 read from T0547.t06.many.frag # found chain 1uslA in template set T0547 207 :TSTELIEAV 1uslA 116 :TVAEALAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90706 # 1y3nA.207.155 read from T0547.t06.many.frag # found chain 1y3nA in template set T0547 207 :TSTELIEAV 1y3nA 156 :TVDELYTVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90707 # 1ofcX.207.143 read from T0547.t06.many.frag # found chain 1ofcX in template set T0547 207 :TSTELIEAV 1ofcX 831 :TPEEVIEYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=90708 # 2ajtA.207.55 read from T0547.t06.many.frag # found chain 2ajtA in template set T0547 207 :TSTELIEAV 2ajtA 56 :TPDEITAIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=90709 # 1vkeA.207.87 read from T0547.t06.many.frag # found chain 1vkeA in training set T0547 207 :TSTELIEAV 1vkeA 76 :SDEEIFEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90710 # 1v72A.207.157 read from T0547.t06.many.frag # found chain 1v72A in template set T0547 207 :TSTELIEAV 1v72A 158 :TLDEIEAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90711 # 1ct5A.207.154 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 207 :TSTELIEAV 1ct5A 156 :NEAEIFEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90712 # 1xo0A.207.47 read from T0547.t06.many.frag # found chain 1xo0A in template set T0547 207 :TSTELIEAV 1xo0A 67 :EPEDVRDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90713 # 1uarA.207.148 read from T0547.t06.many.frag # found chain 1uarA in training set T0547 207 :TSTELIEAV 1uarA 149 :YRDDVLEHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90714 # 2absA.207.193 read from T0547.t06.many.frag # found chain 2absA in training set T0547 207 :TSTELIEAV 2absA 174 :TPKNALEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90715 # 1rcqA.207.132 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 207 :TSTELIEAV 1rcqA 133 :FPEDFRAAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=90716 # 2fnaA.207.209 read from T0547.t06.many.frag # found chain 2fnaA in template set T0547 207 :TSTELIEAV 2fnaA 209 :SREEAIEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90717 # 1g5aA.207.160 read from T0547.t06.many.frag # found chain 1g5aA in training set T0547 207 :TSTELIEAV 1g5aA 161 :TIGDLREVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90718 # 2a8eA.207.149 read from T0547.t06.many.frag # found chain 2a8eA in template set T0547 207 :TSTELIEAV 2a8eA 150 :DKEQLKTLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=90719 # 1ikpA.207.417 read from T0547.t06.many.frag # found chain 1ikpA in training set T0547 207 :TSTELIEAV 1ikpA 418 :TVERLLQAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=90720 # 1up8A.207.72 read from T0547.t06.many.frag # found chain 1up8A in template set T0547 207 :TSTELIEAV 1up8A 72 :DPDDFLAFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90721 # 1uv7A.207.57 read from T0547.t06.many.frag # found chain 1uv7A in training set T0547 207 :TSTELIEAV 1uv7A 121 :PFSQLVSWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90722 # 1sflA.207.139 read from T0547.t06.many.frag # found chain 1sflA in template set T0547 207 :TSTELIEAV 1sflA 140 :PLDELQFIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=90723 # 1na3A.207.57 read from T0547.t06.many.frag # found chain 1na3A in training set T0547 207 :TSTELIEAV 1na3A 53 :DYDEAIEYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=90724 # 1kptA.207.61 read from T0547.t06.many.frag # found chain 1kptA in training set T0547 207 :TSTELIEAV 1kptA 62 :SGTEACRHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90725 # 1w6gA.207.13 read from T0547.t06.many.frag # found chain 1w6gA in training set T0547 207 :TSTELIEAV 1w6gA 16 :SAGEISEVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=90726 # 2cw6A.207.153 read from T0547.t06.many.frag # found chain 2cw6A in template set T0547 207 :TSTELIEAV 2cw6A 181 :SPAKVAEVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=90727 # 1gci.207.100 read from T0547.t06.many.frag # found chain 1gci in training set T0547 207 :TSTELIEAV 1gci 103 :SVSSIAQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90728 # 2aeuA.207.156 read from T0547.t06.many.frag # found chain 2aeuA in training set T0547 207 :TSTELIEAV 2aeuA 157 :ELENFKKVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90729 # 1hbnA.207.123 read from T0547.t06.many.frag # found chain 1hbnA in training set T0547 207 :TSTELIEAV 1hbnA 125 :TPETITHYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90730 # 1ed1A.207.29 read from T0547.t06.many.frag # found chain 1ed1A in template set T0547 207 :TSTELIEAV 1ed1A 30 :MLKHVVWAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90731 # 1ppjB.207.186 read from T0547.t06.many.frag # found chain 1ppjB in template set T0547 207 :TSTELIEAV 1ppjB 187 :TPVELHDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90732 # 1ikpA.208.418 read from T0547.t06.many.frag # found chain 1ikpA in training set T0547 208 :STELIEAVN 1ikpA 419 :VERLLQAHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90733 # 1vkeA.208.88 read from T0547.t06.many.frag # found chain 1vkeA in training set T0547 208 :STELIEAVN 1vkeA 77 :DEEIFEALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90734 # 1xo0A.208.48 read from T0547.t06.many.frag # found chain 1xo0A in template set T0547 208 :STELIEAVN 1xo0A 68 :PEDVRDYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90735 # 2cw6A.208.154 read from T0547.t06.many.frag # found chain 2cw6A in template set T0547 208 :STELIEAVN 2cw6A 182 :PAKVAEVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90736 # 1g5aA.208.161 read from T0547.t06.many.frag # found chain 1g5aA in training set T0547 208 :STELIEAVN 1g5aA 162 :IGDLREVIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90737 # 1ct5A.208.155 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 208 :STELIEAVN 1ct5A 157 :EAEIFEVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=90738 # 1kptA.208.62 read from T0547.t06.many.frag # found chain 1kptA in training set T0547 208 :STELIEAVN 1kptA 63 :GTEACRHLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=90739 # 1y3nA.208.156 read from T0547.t06.many.frag # found chain 1y3nA in template set T0547 208 :STELIEAVN 1y3nA 157 :VDELYTVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90740 # 1xeaA.208.99 read from T0547.t06.many.frag # found chain 1xeaA in template set T0547 208 :STELIEAVN 1xeaA 100 :AQECENLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90741 # 1ofcX.208.144 read from T0547.t06.many.frag # found chain 1ofcX in template set T0547 208 :STELIEAVN 1ofcX 832 :PEEVIEYNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90742 # 1na3A.208.58 read from T0547.t06.many.frag # found chain 1na3A in training set T0547 208 :STELIEAVN 1na3A 54 :YDEAIEYYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=90743 # 1jakA.208.229 read from T0547.t06.many.frag # found chain 1jakA in training set T0547 208 :STELIEAVN 1jakA 224 :KAEYKEIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90744 # 1zj8A.208.150 read from T0547.t06.many.frag # found chain 1zj8A in template set T0547 208 :STELIEAVN 1zj8A 140 :VENVPEIWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90745 # 1pu6A.208.44 read from T0547.t06.many.frag # found chain 1pu6A in training set T0547 208 :STELIEAVN 1pu6A 45 :FEAVLKSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90746 # 1hbnA.208.124 read from T0547.t06.many.frag # found chain 1hbnA in training set T0547 208 :STELIEAVN 1hbnA 126 :PETITHYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90747 # 1lv7A.208.89 read from T0547.t06.many.frag # found chain 1lv7A in training set T0547 208 :STELIEAVN 1lv7A 233 :ASRVRDMFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90748 # 2b7nA.208.212 read from T0547.t06.many.frag # found chain 2b7nA in template set T0547 208 :STELIEAVN 2b7nA 213 :VLETKEIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90749 # 1senA.208.135 read from T0547.t06.many.frag # found chain 1senA in training set T0547 208 :STELIEAVN 1senA 144 :AEQVVQGMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90750 # 2absA.208.194 read from T0547.t06.many.frag # found chain 2absA in training set T0547 208 :STELIEAVN 2absA 175 :PKNALEVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90751 # 2ajtA.208.56 read from T0547.t06.many.frag # found chain 2ajtA in template set T0547 208 :STELIEAVN 2ajtA 57 :PDEITAICR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90752 # 2b0lA.208.56 read from T0547.t06.many.frag # found chain 2b0lA in template set Warning: unaligning (T0547)E213 because of BadResidue code BAD_PEPTIDE in next template residue (2b0lA)A220 Warning: unaligning (T0547)A214 because of BadResidue code BAD_PEPTIDE at template residue (2b0lA)A220 T0547 208 :STELI 2b0lA 214 :RSVIV T0547 215 :VN 2b0lA 221 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=90754 # 1bli.208.79 read from T0547.t06.many.frag # found chain 1bli in template set T0547 208 :STELIEAVN 1bli 80 :KGELQSAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90755 # 2aeuA.208.157 read from T0547.t06.many.frag # found chain 2aeuA in training set T0547 208 :STELIEAVN 2aeuA 158 :LENFKKVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=90756 # 2a8eA.208.150 read from T0547.t06.many.frag # found chain 2a8eA in template set T0547 208 :STELIEAVN 2a8eA 151 :KEQLKTLFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90757 # 1k0fA.208.195 read from T0547.t06.many.frag # found chain 1k0fA in template set T0547 208 :STELIEAVN 1k0fA 227 :AHDMQELAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90758 # 1go3F.208.48 read from T0547.t06.many.frag # found chain 1go3F in training set T0547 208 :STELIEAVN 1go3F 49 :KEEAKKLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90759 # 1v72A.208.158 read from T0547.t06.many.frag # found chain 1v72A in template set T0547 208 :STELIEAVN 1v72A 159 :LDEIEAIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90760 # 1uslA.208.124 read from T0547.t06.many.frag # found chain 1uslA in template set T0547 208 :STELIEAVN 1uslA 117 :VAEALAIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90761 # 1t06A.208.145 read from T0547.t06.many.frag # found chain 1t06A in template set T0547 208 :STELIEAVN 1t06A 146 :ESKISDMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90762 # 1wyzA.208.69 read from T0547.t06.many.frag # found chain 1wyzA in template set T0547 208 :STELIEAVN 1wyzA 70 :PEDISGYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90763 # 1ikpA.209.419 read from T0547.t06.many.frag # found chain 1ikpA in training set T0547 209 :TELIEAVNL 1ikpA 420 :ERLLQAHRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=90764 # 2absA.209.195 read from T0547.t06.many.frag # found chain 2absA in training set T0547 209 :TELIEAVNL 2absA 176 :KNALEVAGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=90765 # 1ct5A.209.156 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 209 :TELIEAVNL 1ct5A 158 :AEIFEVIDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=90766 # 1g5aA.209.162 read from T0547.t06.many.frag # found chain 1g5aA in training set T0547 209 :TELIEAVNL 1g5aA 163 :GDLREVIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90767 # 1bli.209.80 read from T0547.t06.many.frag # found chain 1bli in template set T0547 209 :TELIEAVNL 1bli 81 :GELQSAIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90768 # 2aeuA.209.158 read from T0547.t06.many.frag # found chain 2aeuA in training set T0547 209 :TELIEAVNL 2aeuA 159 :ENFKKVINT Number of specific fragments extracted= 1 number of extra gaps= 0 total=90769 # 1xeaA.209.100 read from T0547.t06.many.frag # found chain 1xeaA in template set T0547 209 :TELIEAVNL 1xeaA 101 :QECENLYEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90770 # 2b0lA.209.57 read from T0547.t06.many.frag # found chain 2b0lA in template set Warning: unaligning (T0547)E213 because of BadResidue code BAD_PEPTIDE in next template residue (2b0lA)A220 Warning: unaligning (T0547)A214 because of BadResidue code BAD_PEPTIDE at template residue (2b0lA)A220 T0547 209 :TELI 2b0lA 215 :SVIV T0547 215 :VNL 2b0lA 221 :LRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=90772 # 1jakA.209.230 read from T0547.t06.many.frag # found chain 1jakA in training set T0547 209 :TELIEAVNL 1jakA 225 :AEYKEIVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=90773 # 1v72A.209.159 read from T0547.t06.many.frag # found chain 1v72A in template set T0547 209 :TELIEAVNL 1v72A 160 :DEIEAIGDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90774 # 1k0fA.209.196 read from T0547.t06.many.frag # found chain 1k0fA in template set T0547 209 :TELIEAVNL 1k0fA 228 :HDMQELAAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=90775 # 2a8eA.209.151 read from T0547.t06.many.frag # found chain 2a8eA in template set T0547 209 :TELIEAVNL 2a8eA 152 :EQLKTLFER Number of specific fragments extracted= 1 number of extra gaps= 0 total=90776 # 1px5A.209.166 read from T0547.t06.many.frag # found chain 1px5A in training set T0547 209 :TELIEAVNL 1px5A 167 :EIYVQLIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90777 # 1ofcX.209.145 read from T0547.t06.many.frag # found chain 1ofcX in template set T0547 209 :TELIEAVNL 1ofcX 833 :EEVIEYNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90778 # 1pu6A.209.45 read from T0547.t06.many.frag # found chain 1pu6A in training set T0547 209 :TELIEAVNL 1pu6A 46 :EAVLKSLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=90779 # 1xw8A.209.37 read from T0547.t06.many.frag # found chain 1xw8A in template set T0547 209 :TELIEAVNL 1xw8A 38 :QIMQACVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90780 # 1zj8A.209.151 read from T0547.t06.many.frag # found chain 1zj8A in template set T0547 209 :TELIEAVNL 1zj8A 141 :ENVPEIWRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90781 # 1vkeA.209.89 read from T0547.t06.many.frag # found chain 1vkeA in training set T0547 209 :TELIEAVNL 1vkeA 78 :EEIFEALDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90782 # 1xcbA.209.150 read from T0547.t06.many.frag # found chain 1xcbA in template set T0547 209 :TELIEAVNL 1xcbA 151 :EAAQKAADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90783 # 1xo0A.209.49 read from T0547.t06.many.frag # found chain 1xo0A in template set T0547 209 :TELIEAVNL 1xo0A 69 :EDVRDYLLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=90784 # 1y3nA.209.157 read from T0547.t06.many.frag # found chain 1y3nA in template set T0547 209 :TELIEAVNL 1y3nA 158 :DELYTVLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90785 # 1go3F.209.49 read from T0547.t06.many.frag # found chain 1go3F in training set T0547 209 :TELIEAVNL 1go3F 50 :EEAKKLVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90786 # 1w6gA.209.15 read from T0547.t06.many.frag # found chain 1w6gA in training set T0547 209 :TELIEAVNL 1w6gA 18 :GEISEVQGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90787 # 1rcqA.209.134 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 209 :TELIEAVNL 1rcqA 135 :EDFRAAHER Number of specific fragments extracted= 1 number of extra gaps= 0 total=90788 # 1kptA.209.63 read from T0547.t06.many.frag # found chain 1kptA in training set T0547 209 :TELIEAVNL 1kptA 64 :TEACRHLTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=90789 # 1t06A.209.146 read from T0547.t06.many.frag # found chain 1t06A in template set T0547 209 :TELIEAVNL 1t06A 147 :SKISDMLEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=90790 # 1na3A.209.59 read from T0547.t06.many.frag # found chain 1na3A in training set T0547 209 :TELIEAVNL 1na3A 55 :DEAIEYYQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90791 # 1lv7A.209.90 read from T0547.t06.many.frag # found chain 1lv7A in training set T0547 209 :TELIEAVNL 1lv7A 234 :SRVRDMFEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=90792 # 2ajtA.209.57 read from T0547.t06.many.frag # found chain 2ajtA in template set T0547 209 :TELIEAVNL 2ajtA 58 :DEITAICRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90793 # 1hbnA.209.125 read from T0547.t06.many.frag # found chain 1hbnA in training set T0547 209 :TELIEAVNL 1hbnA 127 :ETITHYLET Number of specific fragments extracted= 1 number of extra gaps= 0 total=90794 # 1ct5A.210.157 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 210 :ELIEAVNLL 1ct5A 159 :EIFEVIDFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=90795 # 2absA.210.196 read from T0547.t06.many.frag # found chain 2absA in training set T0547 210 :ELIEAVNLL 2absA 177 :NALEVAGYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90796 # 2b0lA.210.58 read from T0547.t06.many.frag # found chain 2b0lA in template set Warning: unaligning (T0547)E213 because of BadResidue code BAD_PEPTIDE in next template residue (2b0lA)A220 Warning: unaligning (T0547)A214 because of BadResidue code BAD_PEPTIDE at template residue (2b0lA)A220 T0547 210 :ELI 2b0lA 216 :VIV T0547 215 :VNLL 2b0lA 221 :LRKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=90798 # 1g5aA.210.163 read from T0547.t06.many.frag # found chain 1g5aA in training set T0547 210 :ELIEAVNLL 1g5aA 164 :DLREVIAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90799 # 1bli.210.81 read from T0547.t06.many.frag # found chain 1bli in template set T0547 210 :ELIEAVNLL 1bli 82 :ELQSAIKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90800 # 1xeaA.210.101 read from T0547.t06.many.frag # found chain 1xeaA in template set T0547 210 :ELIEAVNLL 1xeaA 102 :ECENLYELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90801 # 2aeuA.210.159 read from T0547.t06.many.frag # found chain 2aeuA in training set T0547 210 :ELIEAVNLL 2aeuA 160 :NFKKVINTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90802 # 1px5A.210.167 read from T0547.t06.many.frag # found chain 1px5A in training set T0547 210 :ELIEAVNLL 1px5A 168 :IYVQLIKEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=90803 # 1jakA.210.231 read from T0547.t06.many.frag # found chain 1jakA in training set T0547 210 :ELIEAVNLL 1jakA 226 :EYKEIVRYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90804 # 2a8eA.210.152 read from T0547.t06.many.frag # found chain 2a8eA in template set T0547 210 :ELIEAVNLL 2a8eA 153 :QLKTLFERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90805 # 1drw.210.83 read from T0547.t06.many.frag # found chain 1drw in template set T0547 210 :ELIEAVNLL 1drw 84 :GTLNHLAFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=90806 # 1pu6A.210.46 read from T0547.t06.many.frag # found chain 1pu6A in training set T0547 210 :ELIEAVNLL 1pu6A 47 :AVLKSLENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90807 # 1zj8A.210.152 read from T0547.t06.many.frag # found chain 1zj8A in template set T0547 210 :ELIEAVNLL 1zj8A 142 :NVPEIWRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90808 # 1xw8A.210.38 read from T0547.t06.many.frag # found chain 1xw8A in template set T0547 210 :ELIEAVNLL 1xw8A 39 :IMQACVREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90809 # 1k0fA.210.197 read from T0547.t06.many.frag # found chain 1k0fA in template set T0547 210 :ELIEAVNLL 1k0fA 229 :DMQELAAFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90810 # 1ikpA.210.420 read from T0547.t06.many.frag # found chain 1ikpA in training set T0547 210 :ELIEAVNLL 1ikpA 421 :RLLQAHRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90811 # 1xcbA.210.151 read from T0547.t06.many.frag # found chain 1xcbA in template set T0547 210 :ELIEAVNLL 1xcbA 152 :AAQKAADLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90812 # 1wb4A.210.234 read from T0547.t06.many.frag # found chain 1wb4A in training set T0547 210 :ELIEAVNLL 1wb4A 1023 :NMNPQIEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=90813 # 1ofcX.210.146 read from T0547.t06.many.frag # found chain 1ofcX in template set T0547 210 :ELIEAVNLL 1ofcX 834 :EVIEYNAVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=90814 # 1xo0A.210.50 read from T0547.t06.many.frag # found chain 1xo0A in template set T0547 210 :ELIEAVNLL 1xo0A 70 :DVRDYLLYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90815 # 1qwgA.210.55 read from T0547.t06.many.frag # found chain 1qwgA in training set T0547 210 :ELIEAVNLL 1qwgA 56 :VVKEKINYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=90816 # 1y3nA.210.158 read from T0547.t06.many.frag # found chain 1y3nA in template set T0547 210 :ELIEAVNLL 1y3nA 159 :ELYTVLKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=90817 # 1go3F.210.50 read from T0547.t06.many.frag # found chain 1go3F in training set T0547 210 :ELIEAVNLL 1go3F 51 :EAKKLVEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90818 # 1fcqA.210.281 read from T0547.t06.many.frag # found chain 1fcqA in training set T0547 210 :ELIEAVNLL 1fcqA 282 :DLEATLRKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90819 # 1kptA.210.64 read from T0547.t06.many.frag # found chain 1kptA in training set T0547 210 :ELIEAVNLL 1kptA 65 :EACRHLTNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90820 # 1gci.210.103 read from T0547.t06.many.frag # found chain 1gci in training set T0547 210 :ELIEAVNLL 1gci 106 :SIAQGLEWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90821 # 1na3A.210.60 read from T0547.t06.many.frag # found chain 1na3A in training set T0547 210 :ELIEAVNLL 1na3A 56 :EAIEYYQKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90822 # 1p1mA.210.181 read from T0547.t06.many.frag # found chain 1p1mA in training set T0547 210 :ELIEAVNLL 1p1mA 182 :YLKRVFDTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90823 # 1oltA.210.189 read from T0547.t06.many.frag # found chain 1oltA in template set T0547 210 :ELIEAVNLL 1oltA 190 :FIFALLNHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90824 # 1t06A.210.147 read from T0547.t06.many.frag # found chain 1t06A in template set T0547 210 :ELIEAVNLL 1t06A 148 :KISDMLEMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90825 # 1pu6A.211.47 read from T0547.t06.many.frag # found chain 1pu6A in training set T0547 211 :LIEAVNLLK 1pu6A 48 :VLKSLENLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90826 # 2absA.211.197 read from T0547.t06.many.frag # found chain 2absA in training set T0547 211 :LIEAVNLLK 2absA 178 :ALEVAGYAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=90827 # 2b0lA.211.59 read from T0547.t06.many.frag # found chain 2b0lA in template set Warning: unaligning (T0547)E213 because of BadResidue code BAD_PEPTIDE in next template residue (2b0lA)A220 Warning: unaligning (T0547)A214 because of BadResidue code BAD_PEPTIDE at template residue (2b0lA)A220 T0547 211 :LI 2b0lA 217 :IV T0547 215 :VNLLK 2b0lA 221 :LRKLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=90829 # 1rcqA.211.136 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 211 :LIEAVNLLK 1rcqA 137 :FRAAHERLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90830 # 1drw.211.84 read from T0547.t06.many.frag # found chain 1drw in template set T0547 211 :LIEAVNLLK 1drw 85 :TLNHLAFCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90831 # 1knwA.211.170 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 211 :LIEAVNLLK 1knwA 171 :LPAALDVIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=90832 # 1g5aA.211.164 read from T0547.t06.many.frag # found chain 1g5aA in training set T0547 211 :LIEAVNLLK 1g5aA 165 :LREVIAALH Number of specific fragments extracted= 1 number of extra gaps= 0 total=90833 # 1bli.211.82 read from T0547.t06.many.frag # found chain 1bli in template set T0547 211 :LIEAVNLLK 1bli 83 :LQSAIKSLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=90834 # 1xeaA.211.102 read from T0547.t06.many.frag # found chain 1xeaA in template set T0547 211 :LIEAVNLLK 1xeaA 103 :CENLYELAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90835 # 2aeuA.211.160 read from T0547.t06.many.frag # found chain 2aeuA in training set T0547 211 :LIEAVNLLK 2aeuA 161 :FKKVINTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90836 # 1ikpA.211.421 read from T0547.t06.many.frag # found chain 1ikpA in training set T0547 211 :LIEAVNLLK 1ikpA 422 :LLQAHRQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90837 # 1px5A.211.168 read from T0547.t06.many.frag # found chain 1px5A in training set T0547 211 :LIEAVNLLK 1px5A 169 :YVQLIKECK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90838 # 1jakA.211.232 read from T0547.t06.many.frag # found chain 1jakA in training set T0547 211 :LIEAVNLLK 1jakA 227 :YKEIVRYAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90839 # 1v72A.211.161 read from T0547.t06.many.frag # found chain 1v72A in template set T0547 211 :LIEAVNLLK 1v72A 162 :IEAIGDVCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90840 # 2a8eA.211.153 read from T0547.t06.many.frag # found chain 2a8eA in template set T0547 211 :LIEAVNLLK 2a8eA 154 :LKTLFERLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=90841 # 1fcqA.211.282 read from T0547.t06.many.frag # found chain 1fcqA in training set T0547 211 :LIEAVNLLK 1fcqA 283 :LEATLRKIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=90842 # 1d8wA.211.121 read from T0547.t06.many.frag # found chain 1d8wA in training set T0547 211 :LIEAVNLLK 1d8wA 123 :FKNWVEWAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90843 # 1wb4A.211.235 read from T0547.t06.many.frag # found chain 1wb4A in training set T0547 211 :LIEAVNLLK 1wb4A 1024 :MNPQIEAMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90844 # 1k0fA.211.198 read from T0547.t06.many.frag # found chain 1k0fA in template set T0547 211 :LIEAVNLLK 1k0fA 230 :MQELAAFIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90845 # 1lc5A.211.167 read from T0547.t06.many.frag # found chain 1lc5A in training set T0547 211 :LIEAVNLLK 1lc5A 168 :LQAIADRCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90846 # 1ct5A.211.158 read from T0547.t06.many.frag # found chain 1ct5A in template set T0547 211 :LIEAVNLLK 1ct5A 160 :IFEVIDFFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90847 # 1xw8A.211.39 read from T0547.t06.many.frag # found chain 1xw8A in template set T0547 211 :LIEAVNLLK 1xw8A 40 :MQACVREAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90848 # 1zj8A.211.153 read from T0547.t06.many.frag # found chain 1zj8A in template set T0547 211 :LIEAVNLLK 1zj8A 143 :VPEIWRRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90849 # 1gci.211.104 read from T0547.t06.many.frag # found chain 1gci in training set T0547 211 :LIEAVNLLK 1gci 107 :IAQGLEWAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90850 # 1p1mA.211.182 read from T0547.t06.many.frag # found chain 1p1mA in training set T0547 211 :LIEAVNLLK 1p1mA 183 :LKRVFDTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90851 # 1w6gA.211.17 read from T0547.t06.many.frag # found chain 1w6gA in training set T0547 211 :LIEAVNLLK 1w6gA 20 :ISEVQGILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90852 # 1yhtA.211.96 read from T0547.t06.many.frag # found chain 1yhtA in template set T0547 211 :LIEAVNLLK 1yhtA 97 :LDDIKAYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90853 # 1xcbA.211.152 read from T0547.t06.many.frag # found chain 1xcbA in template set T0547 211 :LIEAVNLLK 1xcbA 153 :AQKAADLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90854 # 1go3F.211.51 read from T0547.t06.many.frag # found chain 1go3F in training set T0547 211 :LIEAVNLLK 1go3F 52 :AKKLVEELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90855 # 1hx0A.211.78 read from T0547.t06.many.frag # found chain 1hx0A in training set T0547 211 :LIEAVNLLK 1hx0A 79 :FRDMVTRCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=90856 # 1fcqA.212.283 read from T0547.t06.many.frag # found chain 1fcqA in training set T0547 212 :IEAVNLLKE 1fcqA 284 :EATLRKITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90857 # 1rcqA.212.137 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 212 :IEAVNLLKE 1rcqA 138 :RAAHERLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90858 # 1lc5A.212.168 read from T0547.t06.many.frag # found chain 1lc5A in training set T0547 212 :IEAVNLLKE 1lc5A 169 :QAIADRCKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90859 # 2b0lA.212.60 read from T0547.t06.many.frag # found chain 2b0lA in template set Warning: unaligning (T0547)E213 because of BadResidue code BAD_PEPTIDE in next template residue (2b0lA)A220 Warning: unaligning (T0547)A214 because of BadResidue code BAD_PEPTIDE at template residue (2b0lA)A220 T0547 212 :I 2b0lA 218 :V T0547 215 :VNLLKE 2b0lA 221 :LRKLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=90861 # 1px5A.212.169 read from T0547.t06.many.frag # found chain 1px5A in training set T0547 212 :IEAVNLLKE 1px5A 170 :VQLIKECKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90862 # 1pu6A.212.48 read from T0547.t06.many.frag # found chain 1pu6A in training set T0547 212 :IEAVNLLKE 1pu6A 49 :LKSLENLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=90863 # 2a8eA.212.154 read from T0547.t06.many.frag # found chain 2a8eA in template set T0547 212 :IEAVNLLKE 2a8eA 155 :KTLFERLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=90864 # 1bli.212.83 read from T0547.t06.many.frag # found chain 1bli in template set T0547 212 :IEAVNLLKE 1bli 84 :QSAIKSLHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90865 # 1drw.212.85 read from T0547.t06.many.frag # found chain 1drw in template set T0547 212 :IEAVNLLKE 1drw 86 :LNHLAFCRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=90866 # 1wb4A.212.236 read from T0547.t06.many.frag # found chain 1wb4A in training set T0547 212 :IEAVNLLKE 1wb4A 1025 :NPQIEAMKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90867 # 1p1mA.212.183 read from T0547.t06.many.frag # found chain 1p1mA in training set T0547 212 :IEAVNLLKE 1p1mA 184 :KRVFDTAKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90868 # 1d8wA.212.122 read from T0547.t06.many.frag # found chain 1d8wA in training set T0547 212 :IEAVNLLKE 1d8wA 124 :KNWVEWAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90869 # 1go3F.212.52 read from T0547.t06.many.frag # found chain 1go3F in training set T0547 212 :IEAVNLLKE 1go3F 53 :KKLVEELIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90870 # 2aeuA.212.161 read from T0547.t06.many.frag # found chain 2aeuA in training set T0547 212 :IEAVNLLKE 2aeuA 162 :KKVINTAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=90871 # 1xw8A.212.40 read from T0547.t06.many.frag # found chain 1xw8A in template set T0547 212 :IEAVNLLKE 1xw8A 41 :QACVREAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90872 # 1g5aA.212.165 read from T0547.t06.many.frag # found chain 1g5aA in training set T0547 212 :IEAVNLLKE 1g5aA 166 :REVIAALHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90873 # 1r6wA.212.247 read from T0547.t06.many.frag # found chain 1r6wA in training set T0547 212 :IEAVNLLKE 1r6wA 246 :REQVQAAHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90874 # 1jakA.212.233 read from T0547.t06.many.frag # found chain 1jakA in training set T0547 212 :IEAVNLLKE 1jakA 228 :KEIVRYAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90875 # 7odcA.212.177 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 212 :IEAVNLLKE 7odcA 178 :RLLLERAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90876 # 1gci.212.105 read from T0547.t06.many.frag # found chain 1gci in training set T0547 212 :IEAVNLLKE 1gci 108 :AQGLEWAGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=90877 # 1ikpA.212.422 read from T0547.t06.many.frag # found chain 1ikpA in training set T0547 212 :IEAVNLLKE 1ikpA 423 :LQAHRQLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90878 # 2absA.212.198 read from T0547.t06.many.frag # found chain 2absA in training set T0547 212 :IEAVNLLKE 2absA 179 :LEVAGYAHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90879 # 1zj8A.212.154 read from T0547.t06.many.frag # found chain 1zj8A in template set T0547 212 :IEAVNLLKE 1zj8A 144 :PEIWRRLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90880 # 1qwgA.212.57 read from T0547.t06.many.frag # found chain 1qwgA in training set T0547 212 :IEAVNLLKE 1qwgA 58 :KEKINYYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90881 # 1xeaA.212.103 read from T0547.t06.many.frag # found chain 1xeaA in template set T0547 212 :IEAVNLLKE 1xeaA 104 :ENLYELAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90882 # 1p1xA.212.183 read from T0547.t06.many.frag # found chain 1p1xA in training set T0547 212 :IEAVNLLKE 1p1xA 183 :RIMMEVIRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90883 # 1hp1A.212.171 read from T0547.t06.many.frag # found chain 1hp1A in training set T0547 212 :IEAVNLLKE 1hp1A 197 :KLVIQELQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=90884 # 1kwgA.212.53 read from T0547.t06.many.frag # found chain 1kwgA in training set T0547 212 :IEAVNLLKE 1kwgA 54 :DEAIATLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90885 # 1pea.212.186 read from T0547.t06.many.frag # found chain 1pea in template set T0547 212 :IEAVNLLKE 1pea 187 :QRAVERIYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=90886 # 1oltA.212.191 read from T0547.t06.many.frag # found chain 1oltA in template set T0547 212 :IEAVNLLKE 1oltA 192 :FALLNHARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90887 # 1fcqA.213.284 read from T0547.t06.many.frag # found chain 1fcqA in training set T0547 213 :EAVNLLKEN 1fcqA 285 :ATLRKITDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90888 # 1lc5A.213.169 read from T0547.t06.many.frag # found chain 1lc5A in training set T0547 213 :EAVNLLKEN 1lc5A 170 :AIADRCKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90889 # 1p1mA.213.184 read from T0547.t06.many.frag # found chain 1p1mA in training set T0547 213 :EAVNLLKEN 1p1mA 185 :RVFDTAKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90890 # 1wb4A.213.237 read from T0547.t06.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)N221 (1wb4A)L1034 because P (beta_P) conformation "forbidden" or filtered. T0547 213 :EAVNLLKE 1wb4A 1026 :PQIEAMKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=90891 # 2b0lA.213.61 read from T0547.t06.many.frag # found chain 2b0lA in template set Warning: unaligning (T0547)E213 because of BadResidue code BAD_PEPTIDE in next template residue (2b0lA)A220 Warning: unaligning (T0547)A214 because of BadResidue code BAD_PEPTIDE at template residue (2b0lA)A220 T0547 215 :VNLLKEN 2b0lA 221 :LRKLESA Number of specific fragments extracted= 1 number of extra gaps= 1 total=90892 # 1rcqA.213.138 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 T0547 213 :EAVNLLKE 1rcqA 139 :AAHERLRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=90893 # 1d8wA.213.123 read from T0547.t06.many.frag # found chain 1d8wA in training set T0547 213 :EAVNLLKEN 1d8wA 125 :NWVEWAKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=90894 # 1bli.213.84 read from T0547.t06.many.frag # found chain 1bli in template set Warning: unaligning (T0547)N221 (1bli)R93 because G (3-10) conformation "forbidden" or filtered. T0547 213 :EAVNLLKE 1bli 85 :SAIKSLHS Number of specific fragments extracted= 1 number of extra gaps= 1 total=90895 # 2aeuA.213.162 read from T0547.t06.many.frag # found chain 2aeuA in training set T0547 213 :EAVNLLKEN 2aeuA 163 :KVINTAKNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90896 # 1px5A.213.170 read from T0547.t06.many.frag # found chain 1px5A in training set T0547 213 :EAVNLLKEN 1px5A 171 :QLIKECKSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=90897 # 1pu6A.213.49 read from T0547.t06.many.frag # found chain 1pu6A in training set T0547 213 :EAVNLLKEN 1pu6A 50 :KSLENLKNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90898 # 1byi.213.156 read from T0547.t06.many.frag # found chain 1byi in training set T0547 213 :EAVNLLKEN 1byi 157 :LTAQVIQHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90899 # 1p1xA.213.184 read from T0547.t06.many.frag # found chain 1p1xA in training set T0547 213 :EAVNLLKEN 1p1xA 184 :IMMEVIRDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=90900 # 2a8eA.213.155 read from T0547.t06.many.frag # found chain 2a8eA in template set T0547 213 :EAVNLLKEN 2a8eA 156 :TLFERLQTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90901 # 1ikpA.213.423 read from T0547.t06.many.frag # found chain 1ikpA in training set T0547 213 :EAVNLLKEN 1ikpA 424 :QAHRQLEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=90902 # 1xw8A.213.41 read from T0547.t06.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)N221 (1xw8A)N50 because G (3-10) conformation "forbidden" or filtered. T0547 213 :EAVNLLKE 1xw8A 42 :ACVREAIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=90903 # 1gci.213.106 read from T0547.t06.many.frag # found chain 1gci in training set T0547 213 :EAVNLLKEN 1gci 109 :QGLEWAGNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=90904 # 1w6gA.213.19 read from T0547.t06.many.frag # found chain 1w6gA in training set T0547 213 :EAVNLLKEN 1w6gA 22 :EVQGILRTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90905 # 1xcbA.213.154 read from T0547.t06.many.frag # found chain 1xcbA in template set T0547 213 :EAVNLLKEN 1xcbA 155 :KAADLLVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90906 # 1yhtA.213.98 read from T0547.t06.many.frag # found chain 1yhtA in template set T0547 213 :EAVNLLKEN 1yhtA 99 :DIKAYAKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90907 # 7odcA.213.178 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 213 :EAVNLLKEN 7odcA 179 :LLLERAKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90908 # 1v72A.213.163 read from T0547.t06.many.frag # found chain 1v72A in template set T0547 213 :EAVNLLKEN 1v72A 164 :AIGDVCKSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=90909 # 1go3F.213.53 read from T0547.t06.many.frag # found chain 1go3F in training set T0547 213 :EAVNLLKEN 1go3F 54 :KLVEELISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90910 # 1u9yA.213.222 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)N221 (1u9yA)Q231 because G (3-10) conformation "forbidden" or filtered. T0547 213 :EAVNLLKE 1u9yA 223 :TAVKLLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=90911 # 1oltA.213.192 read from T0547.t06.many.frag # found chain 1oltA in template set T0547 213 :EAVNLLKEN 1oltA 193 :ALLNHAREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90912 # 1drw.213.86 read from T0547.t06.many.frag # found chain 1drw in template set T0547 213 :EAVNLLKEN 1drw 87 :NHLAFCRQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=90913 # 1knwA.213.172 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 213 :EAVNLLKEN 1knwA 173 :AALDVIQRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=90914 # 1g5aA.213.166 read from T0547.t06.many.frag # found chain 1g5aA in training set T0547 213 :EAVNLLKEN 1g5aA 167 :EVIAALHEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90915 # 1r6wA.213.248 read from T0547.t06.many.frag # found chain 1r6wA in training set T0547 213 :EAVNLLKEN 1r6wA 247 :EQVQAAHAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=90916 # 1e58A.213.38 read from T0547.t06.many.frag # found chain 1e58A in training set T0547 213 :EAVNLLKEN 1e58A 39 :AAGKLLKEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90917 # 1d8wA.214.124 read from T0547.t06.many.frag # found chain 1d8wA in training set Warning: unaligning (T0547)N221 (1d8wA)N133 because G (3-10) conformation "forbidden" or filtered. T0547 214 :AVNLLKE 1d8wA 126 :WVEWAKA T0547 222 :K 1d8wA 134 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=90919 # 1rcqA.214.139 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 214 :AVNLLKE 1rcqA 140 :AHERLRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=90920 # 1p1mA.214.185 read from T0547.t06.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)K222 (1p1mA)N194 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1p1mA 186 :VFDTAKSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=90921 # 2aeuA.214.163 read from T0547.t06.many.frag # found chain 2aeuA in training set T0547 214 :AVNLLKENK 2aeuA 164 :VINTAKNKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=90922 # 1yhtA.214.99 read from T0547.t06.many.frag # found chain 1yhtA in template set Warning: unaligning (T0547)K222 (1yhtA)G108 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1yhtA 100 :IKAYAKAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=90923 # 7odcA.214.179 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K222 (7odcA)N188 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 7odcA 180 :LLERAKEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=90924 # 1w6gA.214.20 read from T0547.t06.many.frag # found chain 1w6gA in training set T0547 214 :AVNLLKENK 1w6gA 23 :VQGILRTAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90925 # 1wb4A.214.238 read from T0547.t06.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)N221 (1wb4A)L1034 because P (beta_P) conformation "forbidden" or filtered. T0547 214 :AVNLLKE 1wb4A 1027 :QIEAMKA T0547 222 :K 1wb4A 1035 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=90927 # 1lc5A.214.170 read from T0547.t06.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)N221 (1lc5A)L178 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1lc5A)N179 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKE 1lc5A 171 :IADRCKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=90928 # 1e58A.214.39 read from T0547.t06.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)K222 (1e58A)G48 because T (delta_L) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1e58A 40 :AGKLLKEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=90929 # 2f62A.214.89 read from T0547.t06.many.frag # found chain 2f62A in training set Warning: unaligning (T0547)K222 (2f62A)N98 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 2f62A 90 :EVGCAAAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=90930 # 1oltA.214.193 read from T0547.t06.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)K222 (1oltA)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1oltA 194 :LLNHAREI Number of specific fragments extracted= 1 number of extra gaps= 1 total=90931 # 1xcbA.214.155 read from T0547.t06.many.frag # found chain 1xcbA in template set Warning: unaligning (T0547)K222 (1xcbA)G164 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1xcbA 156 :AADLLVAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=90932 # 1gci.214.107 read from T0547.t06.many.frag # found chain 1gci in training set Warning: unaligning (T0547)K222 (1gci)G118 because T (delta_L) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1gci 110 :GLEWAGNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=90933 # 1u9yA.214.223 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)K222 (1u9yA)G232 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1u9yA 224 :AVKLLKEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=90934 # 2b0lA.214.62 read from T0547.t06.many.frag # found chain 2b0lA in template set Warning: unaligning (T0547)A214 because of BadResidue code BAD_PEPTIDE at template residue (2b0lA)A220 T0547 215 :VNLLKENK 2b0lA 221 :LRKLESAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=90935 # 1xw8A.214.42 read from T0547.t06.many.frag # found chain 1xw8A in template set T0547 214 :AVNLLKENK 1xw8A 43 :CVREAIKNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90936 # 1fcqA.214.285 read from T0547.t06.many.frag # found chain 1fcqA in training set T0547 214 :AVNLLKENK 1fcqA 286 :TLRKITDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90937 # 1ujcA.214.33 read from T0547.t06.many.frag # found chain 1ujcA in template set T0547 214 :AVNLLKENK 1ujcA 34 :MANWLKGQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90938 # 1p1xA.214.185 read from T0547.t06.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)K222 (1p1xA)G193 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1p1xA 185 :MMEVIRDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=90939 # 1bli.214.85 read from T0547.t06.many.frag # found chain 1bli in template set T0547 214 :AVNLLKENK 1bli 86 :AIKSLHSRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90940 # 1uasA.214.78 read from T0547.t06.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)K222 (1uasA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1uasA 79 :LADYVHAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=90941 # 1wddA.214.252 read from T0547.t06.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)K222 (1wddA)G261 because T (delta_L) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1wddA 253 :RAVFAREL Number of specific fragments extracted= 1 number of extra gaps= 1 total=90942 # 1pu6A.214.50 read from T0547.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0547)K222 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1pu6A 51 :SLENLKNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=90943 # 1g5aA.214.167 read from T0547.t06.many.frag # found chain 1g5aA in training set Warning: unaligning (T0547)K222 (1g5aA)G176 because L (left) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1g5aA 168 :VIAALHEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=90944 # 1xgkA.214.133 read from T0547.t06.many.frag # found chain 1xgkA in training set T0547 214 :AVNLLKENK 1xgkA 134 :VENYVRQLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90945 # 1byi.214.157 read from T0547.t06.many.frag # found chain 1byi in training set Warning: unaligning (T0547)K222 (1byi)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 214 :AVNLLKEN 1byi 158 :TAQVIQHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=90946 # 1fobA.214.64 read from T0547.t06.many.frag # found chain 1fobA in training set T0547 214 :AVNLLKENK 1fobA 65 :LAKRVKAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90947 # 1zy9A.214.254 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 214 :AVNLLKENK 1zy9A 243 :MAKVIAENG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90948 # 1c7nA.214.188 read from T0547.t06.many.frag # found chain 1c7nA in template set T0547 214 :AVNLLKENK 1c7nA 189 :IKDIVLKSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=90949 # 1rcqA.215.140 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 215 :VNLLKE 1rcqA 141 :HERLRA T0547 223 :L 1rcqA 149 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=90951 # 1wb4A.215.239 read from T0547.t06.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)N221 (1wb4A)L1034 because P (beta_P) conformation "forbidden" or filtered. T0547 215 :VNLLKE 1wb4A 1028 :IEAMKA T0547 222 :KL 1wb4A 1035 :PH Number of specific fragments extracted= 2 number of extra gaps= 1 total=90953 # 1w6gA.215.21 read from T0547.t06.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)K222 (1w6gA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1w6gA 24 :QGILRTA T0547 223 :L 1w6gA 32 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=90955 # 1u9yA.215.224 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)K222 (1u9yA)G232 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1u9yA 225 :VKLLKEQ T0547 223 :L 1u9yA 233 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=90957 # 1zy9A.215.255 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 215 :VNLLKENKL 1zy9A 244 :AKVIAENGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=90958 # 2aeuA.215.164 read from T0547.t06.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)K222 (2aeuA)E172 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 2aeuA 165 :INTAKNK T0547 223 :L 2aeuA 173 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=90960 # 2b0lA.215.63 read from T0547.t06.many.frag # found chain 2b0lA in template set T0547 215 :VNLLKENKL 2b0lA 221 :LRKLESAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90961 # 1g5aA.215.168 read from T0547.t06.many.frag # found chain 1g5aA in training set Warning: unaligning (T0547)N221 (1g5aA)A175 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1g5aA)G176 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKE 1g5aA 169 :IAALHE T0547 223 :L 1g5aA 177 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=90963 # 2f62A.215.90 read from T0547.t06.many.frag # found chain 2f62A in training set Warning: unaligning (T0547)N221 (2f62A)L97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (2f62A)N98 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKE 2f62A 91 :VGCAAA T0547 223 :L 2f62A 99 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=90965 # 1lc5A.215.171 read from T0547.t06.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)K222 (1lc5A)N179 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1lc5A 172 :ADRCKSL T0547 223 :L 1lc5A 180 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=90967 # 1p1mA.215.186 read from T0547.t06.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)N221 (1p1mA)L193 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1p1mA)N194 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKE 1p1mA 187 :FDTAKS T0547 223 :L 1p1mA 195 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=90969 # 1d8wA.215.125 read from T0547.t06.many.frag # found chain 1d8wA in training set Warning: unaligning (T0547)N221 (1d8wA)N133 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1d8wA)Q134 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKE 1d8wA 127 :VEWAKA T0547 223 :L 1d8wA 135 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=90971 # 1p1xA.215.186 read from T0547.t06.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)K222 (1p1xA)G193 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1p1xA 186 :MEVIRDM T0547 223 :L 1p1xA 194 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=90973 # 1o8bA.215.182 read from T0547.t06.many.frag # found chain 1o8bA in training set T0547 215 :VNLLKENKL 1o8bA 183 :ENAINAIPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90974 # 1e6iA.215.21 read from T0547.t06.many.frag # found chain 1e6iA in template set Warning: unaligning (T0547)N221 (1e6iA)H346 because P (beta_P) conformation "forbidden" or filtered. T0547 215 :VNLLKE 1e6iA 340 :LTELQN T0547 222 :KL 1e6iA 347 :AA Number of specific fragments extracted= 2 number of extra gaps= 1 total=90976 # 1wddA.215.253 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 215 :VNLLKENKL 1wddA 254 :AVFARELGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90977 # 1oygA.215.267 read from T0547.t06.many.frag # found chain 1oygA in training set T0547 215 :VNLLKENKL 1oygA 294 :SQKLLQSDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=90978 # 1qd1A.215.22 read from T0547.t06.many.frag # found chain 1qd1A in training set T0547 215 :VNLLKENKL 1qd1A 24 :SRAVAQTPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=90979 # 1gci.215.108 read from T0547.t06.many.frag # found chain 1gci in training set T0547 215 :VNLLKENKL 1gci 111 :LEWAGNNGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=90980 # 1pu6A.215.51 read from T0547.t06.many.frag # found chain 1pu6A in training set T0547 215 :VNLLKENKL 1pu6A 52 :LENLKNAFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90981 # 1nkiA.215.77 read from T0547.t06.many.frag # found chain 1nkiA in training set T0547 215 :VNLLKENKL 1nkiA 78 :AAQLRAHGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=90982 # 1j0dA.215.147 read from T0547.t06.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)K222 (1j0dA)G155 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1j0dA 148 :LQELEDA T0547 223 :L 1j0dA 156 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=90984 # 1xw8A.215.43 read from T0547.t06.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)K222 (1xw8A)G51 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1xw8A 44 :VREAIKN T0547 223 :L 1xw8A 52 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=90986 # 1fcqA.215.286 read from T0547.t06.many.frag # found chain 1fcqA in training set T0547 215 :VNLLKENKL 1fcqA 287 :LRKITDLGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90987 # 1e58A.215.40 read from T0547.t06.many.frag # found chain 1e58A in training set T0547 215 :VNLLKENKL 1e58A 41 :GKLLKEEGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=90988 # 1vflA.215.199 read from T0547.t06.many.frag # found chain 1vflA in training set Warning: unaligning (T0547)K222 (1vflA)G205 because L (left) conformation "forbidden" or filtered. T0547 215 :VNLLKEN 1vflA 198 :YAEAVKS T0547 223 :L 1vflA 206 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=90990 # 1kptA.215.69 read from T0547.t06.many.frag # found chain 1kptA in training set T0547 215 :VNLLKENKL 1kptA 70 :LTNLVNHGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=90991 # 1j2rA.215.149 read from T0547.t06.many.frag # found chain 1j2rA in training set T0547 215 :VNLLKENKL 1j2rA 150 :ARNAWELGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=90992 # 1colA.215.62 read from T0547.t06.many.frag # found chain 1colA in template set T0547 215 :VNLLKENKL 1colA 63 :LNKITANPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=90993 # 1yhtA.215.100 read from T0547.t06.many.frag # found chain 1yhtA in template set T0547 215 :VNLLKENKL 1yhtA 101 :KAYAKAKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=90994 # 1wb4A.216.240 read from T0547.t06.many.frag # found chain 1wb4A in training set T0547 216 :NLLKENKLL 1wb4A 1029 :EAMKALPHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=90995 # 1rcqA.216.141 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 216 :NLLKE 1rcqA 142 :ERLRA T0547 223 :LL 1rcqA 149 :KV Number of specific fragments extracted= 2 number of extra gaps= 1 total=90997 # 1w6gA.216.22 read from T0547.t06.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)K222 (1w6gA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1w6gA 25 :GILRTA T0547 223 :LL 1w6gA 32 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=90999 # 1qd1A.216.23 read from T0547.t06.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)L223 (1qd1A)G32 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKENK 1qd1A 25 :RAVAQTP T0547 224 :L 1qd1A 33 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=91001 # 1o8bA.216.183 read from T0547.t06.many.frag # found chain 1o8bA in training set T0547 216 :NLLKENKLL 1o8bA 184 :NAINAIPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91002 # 1u9yA.216.225 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 216 :NLLKENKLL 1u9yA 226 :KLLKEQGAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=91003 # 1e6iA.216.22 read from T0547.t06.many.frag # found chain 1e6iA in template set Warning: unaligning (T0547)N221 (1e6iA)H346 because P (beta_P) conformation "forbidden" or filtered. T0547 216 :NLLKE 1e6iA 341 :TELQN T0547 222 :KLL 1e6iA 347 :AAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=91005 # 1p1xA.216.187 read from T0547.t06.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)N221 (1p1xA)M192 because G (3-10) conformation "forbidden" or filtered. T0547 216 :NLLKE 1p1xA 187 :EVIRD T0547 222 :KLL 1p1xA 193 :GVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=91007 # 1pu6A.216.52 read from T0547.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0547)K222 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1pu6A 53 :ENLKNA T0547 223 :LL 1pu6A 60 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91009 # 1g5aA.216.169 read from T0547.t06.many.frag # found chain 1g5aA in training set T0547 216 :NLLKENKLL 1g5aA 170 :AALHEAGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=91010 # 1zy9A.216.256 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 216 :NLLKENKLL 1zy9A 245 :KVIAENGFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91011 # 2b0lA.216.64 read from T0547.t06.many.frag # found chain 2b0lA in template set Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2b0lA)E231 T0547 216 :NLLKENKL 2b0lA 222 :RKLESAGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=91012 # 1vp4A.216.176 read from T0547.t06.many.frag # found chain 1vp4A in template set T0547 216 :NLLKENKLL 1vp4A 165 :SEFDKNGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91013 # 1pa1A.216.207 read from T0547.t06.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)K222 (1pa1A)G702 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1pa1A 696 :FKVRES T0547 223 :LL 1pa1A 703 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91015 # 1ra0A.216.234 read from T0547.t06.many.frag # found chain 1ra0A in training set T0547 216 :NLLKENKLL 1ra0A 231 :ALAHHEGMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91016 # 2aeuA.216.165 read from T0547.t06.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)K222 (2aeuA)E172 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 2aeuA 166 :NTAKNK T0547 223 :LL 2aeuA 173 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=91018 # 2fn0A.216.83 read from T0547.t06.many.frag # found chain 2fn0A in template set T0547 216 :NLLKENKLL 2fn0A 81 :RRFMAHPQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91019 # 1hp1A.216.175 read from T0547.t06.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)K222 (1hp1A)E207 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L223 (1hp1A)K208 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1hp1A 201 :QELQQT T0547 224 :L 1hp1A 209 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=91021 # 1mla.216.180 read from T0547.t06.many.frag # found chain 1mla in training set T0547 216 :NLLKENKLL 1mla 181 :AACKAAGAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=91022 # 1cs1A.216.160 read from T0547.t06.many.frag # found chain 1cs1A in training set Warning: unaligning (T0547)K222 (1cs1A)G167 because T (delta_L) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1cs1A 161 :HLAREV T0547 223 :LL 1cs1A 168 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=91024 # 1colA.216.63 read from T0547.t06.many.frag # found chain 1colA in template set T0547 216 :NLLKENKLL 1colA 64 :NKITANPAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=91025 # 2f62A.216.91 read from T0547.t06.many.frag # found chain 2f62A in training set T0547 216 :NLLKENKLL 2f62A 92 :GCAAALNKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=91026 # 1e58A.216.41 read from T0547.t06.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)L224 (1e58A)S50 because Y (epsilon') conformation "forbidden" or filtered. T0547 216 :NLLKENKL 1e58A 42 :KLLKEEGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=91027 # 2absA.216.202 read from T0547.t06.many.frag # found chain 2absA in training set T0547 216 :NLLKENKLL 2absA 183 :GYAHGIPNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=91028 # 1p1mA.216.187 read from T0547.t06.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)K222 (1p1mA)N194 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1p1mA 188 :DTAKSL T0547 223 :LL 1p1mA 195 :AP Number of specific fragments extracted= 2 number of extra gaps= 1 total=91030 # 1wddA.216.254 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 216 :NLLKENKLL 1wddA 255 :VFARELGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=91031 # 1q52A.216.73 read from T0547.t06.many.frag # found chain 1q52A in training set T0547 216 :NLLKENKLL 1q52A 74 :DHARMSPDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91032 # 1wzdA.216.60 read from T0547.t06.many.frag # found chain 1wzdA in training set Warning: unaligning (T0547)K222 (1wzdA)G67 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1wzdA)A69 because L (left) conformation "forbidden" or filtered. T0547 216 :NLLKEN 1wzdA 61 :DAVRAS T0547 223 :L 1wzdA 68 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=91034 # 1lc5A.216.172 read from T0547.t06.many.frag # found chain 1lc5A in training set T0547 216 :NLLKENKLL 1lc5A 173 :DRCKSLNIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=91035 # 1zxxA.216.205 read from T0547.t06.many.frag # found chain 1zxxA in template set T0547 216 :NLLKENKLL 1zxxA 206 :KQAQESGKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91036 # 1qd1A.217.24 read from T0547.t06.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)E225 (1qd1A)V34 because E (beta_S) conformation "forbidden" or filtered. T0547 217 :LLKENKLL 1qd1A 26 :AVAQTPGC Number of specific fragments extracted= 1 number of extra gaps= 1 total=91037 # 1wb4A.217.241 read from T0547.t06.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)N221 (1wb4A)L1034 because P (beta_P) conformation "forbidden" or filtered. T0547 217 :LLKE 1wb4A 1030 :AMKA T0547 222 :KLLE 1wb4A 1035 :PHFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=91039 # 1o8bA.217.184 read from T0547.t06.many.frag # found chain 1o8bA in training set T0547 217 :LLKENKLLE 1o8bA 185 :AINAIPGVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91040 # 1rcqA.217.142 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 217 :LLKE 1rcqA 143 :RLRA T0547 223 :LLE 1rcqA 149 :KVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=91042 # 1w6gA.217.23 read from T0547.t06.many.frag # found chain 1w6gA in training set T0547 217 :LLKENKLLE 1w6gA 26 :ILRTAGLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91043 # 1g5aA.217.170 read from T0547.t06.many.frag # found chain 1g5aA in training set Warning: unaligning (T0547)K222 (1g5aA)G176 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKEN 1g5aA 171 :ALHEA T0547 223 :LLE 1g5aA 177 :ISA Number of specific fragments extracted= 2 number of extra gaps= 1 total=91045 # 1ra0A.217.235 read from T0547.t06.many.frag # found chain 1ra0A in training set T0547 217 :LLKENKLLE 1ra0A 232 :LAHHEGMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=91046 # 1e6iA.217.23 read from T0547.t06.many.frag # found chain 1e6iA in template set T0547 217 :LLKENKLLE 1e6iA 342 :ELQNHAAAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=91047 # 1u9yA.217.226 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 217 :LLKENKLLE 1u9yA 227 :LLKEQGAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=91048 # 2fn0A.217.84 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)E225 (2fn0A)K90 because P (beta_P) conformation "forbidden" or filtered. T0547 217 :LLKENKLL 2fn0A 82 :RFMAHPQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=91049 # 1u7nA.217.198 read from T0547.t06.many.frag # found chain 1u7nA in template set T0547 217 :LLKENKLLE 1u7nA 196 :LLAADETIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=91050 # 1zl0A.217.73 read from T0547.t06.many.frag # found chain 1zl0A in training set T0547 217 :LLKENKLLE 1zl0A 72 :NAFDMPDIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=91051 # 1pa1A.217.208 read from T0547.t06.many.frag # found chain 1pa1A in template set T0547 217 :LLKENKLLE 1pa1A 697 :KVRESGSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=91052 # 1vp4A.217.177 read from T0547.t06.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)K222 (1vp4A)G171 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKEN 1vp4A 166 :EFDKN T0547 223 :LLE 1vp4A 172 :KIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=91054 # 1jl0A.217.96 read from T0547.t06.many.frag # found chain 1jl0A in training set T0547 217 :LLKENKLLE 1jl0A 97 :LARDYSGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91055 # 1pu6A.217.53 read from T0547.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0547)N221 (1pu6A)A58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKE 1pu6A 54 :NLKN T0547 223 :LLE 1pu6A 60 :ILE Number of specific fragments extracted= 2 number of extra gaps= 1 total=91057 # 1colA.217.64 read from T0547.t06.many.frag # found chain 1colA in template set T0547 217 :LLKENKLLE 1colA 65 :KITANPAMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=91058 # 1p1xA.217.188 read from T0547.t06.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)K222 (1p1xA)G193 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKEN 1p1xA 188 :VIRDM T0547 223 :LLE 1p1xA 194 :VEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=91060 # 1zy9A.217.257 read from T0547.t06.many.frag # found chain 1zy9A in template set Warning: unaligning (T0547)K222 (1zy9A)G251 because T (delta_L) conformation "forbidden" or filtered. T0547 217 :LLKEN 1zy9A 246 :VIAEN T0547 223 :LLE 1zy9A 252 :FIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=91062 # 1wzdA.217.61 read from T0547.t06.many.frag # found chain 1wzdA in training set Warning: unaligning (T0547)K222 (1wzdA)G67 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1wzdA)A69 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKEN 1wzdA 62 :AVRAS T0547 223 :L 1wzdA 68 :F T0547 225 :E 1wzdA 70 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=91065 # 2b0lA.217.65 read from T0547.t06.many.frag # found chain 2b0lA in template set Warning: unaligning (T0547)K222 (2b0lA)G228 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2b0lA)E231 Warning: unaligning (T0547)E225 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2b0lA)E231 T0547 217 :LLKEN 2b0lA 223 :KLESA T0547 223 :L 2b0lA 229 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=91067 # 1yvvA.217.70 read from T0547.t06.many.frag # found chain 1yvvA in template set Warning: unaligning (T0547)K222 (1yvvA)G76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1yvvA)A79 because Y (epsilon') conformation "forbidden" or filtered. T0547 217 :LLKEN 1yvvA 71 :QWQAQ T0547 223 :LL 1yvvA 77 :HV Number of specific fragments extracted= 2 number of extra gaps= 2 total=91069 # 1q52A.217.74 read from T0547.t06.many.frag # found chain 1q52A in training set T0547 217 :LLKENKLLE 1q52A 75 :HARMSPDVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91070 # 2a2fX.217.126 read from T0547.t06.many.frag # found chain 2a2fX in template set Warning: unaligning (T0547)E225 (2a2fX)T135 because P (beta_P) conformation "forbidden" or filtered. T0547 217 :LLKENKLL 2a2fX 127 :VVFRQPSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=91071 # 1h8eA.217.218 read from T0547.t06.many.frag # found chain 1h8eA in template set T0547 217 :LLKENKLLE 1h8eA 219 :RLTDADAMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=91072 # 1u60A.217.173 read from T0547.t06.many.frag # found chain 1u60A in training set Warning: unaligning (T0547)N221 (1u60A)A178 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1u60A)G179 because T (delta_L) conformation "forbidden" or filtered. T0547 217 :LLKE 1u60A 174 :LLYS T0547 223 :LLE 1u60A 180 :YLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=91074 # 1cs1A.217.161 read from T0547.t06.many.frag # found chain 1cs1A in training set T0547 217 :LLKENKLLE 1cs1A 162 :LAREVGAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=91075 # 2audA.217.152 read from T0547.t06.many.frag # found chain 2audA in template set Warning: unaligning (T0547)N221 (2audA)N158 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (2audA)K159 because L (left) conformation "forbidden" or filtered. T0547 217 :LLKE 2audA 154 :KMID T0547 223 :LLE 2audA 160 :EFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=91077 # 2bhuA.217.200 read from T0547.t06.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)E225 (2bhuA)V209 because E (beta_S) conformation "forbidden" or filtered. T0547 217 :LLKENKLL 2bhuA 201 :AAHRLGLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=91078 # 1zxxA.217.206 read from T0547.t06.many.frag # found chain 1zxxA in template set Warning: unaligning (T0547)K222 (1zxxA)G212 because T (delta_L) conformation "forbidden" or filtered. T0547 217 :LLKEN 1zxxA 207 :QAQES T0547 223 :LLE 1zxxA 213 :KDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=91080 # 1qd1A.218.25 read from T0547.t06.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)K222 (1qd1A)P31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L223 (1qd1A)G32 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKEN 1qd1A 27 :VAQT T0547 224 :LEQ 1qd1A 33 :CVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91082 # 1wb4A.218.242 read from T0547.t06.many.frag # found chain 1wb4A in training set T0547 218 :LKENKLLEQ 1wb4A 1031 :MKALPHFDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=91083 # 1o8bA.218.185 read from T0547.t06.many.frag # found chain 1o8bA in training set Warning: unaligning (T0547)L223 (1o8bA)G191 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKENK 1o8bA 186 :INAIP T0547 224 :LEQ 1o8bA 192 :VVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=91085 # 1w6gA.218.24 read from T0547.t06.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)E225 (1w6gA)G34 because P (beta_P) conformation "forbidden" or filtered. T0547 218 :LKENKLL 1w6gA 27 :LRTAGLL T0547 226 :Q 1w6gA 35 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=91087 # 2fn0A.218.85 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)Q226 (2fn0A)G91 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKENKLLE 2fn0A 83 :FMAHPQVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=91088 # 1jl0A.218.97 read from T0547.t06.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)L223 (1jl0A)G103 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKENK 1jl0A 98 :ARDYS T0547 224 :LEQ 1jl0A 104 :FDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=91090 # 1g5aA.218.171 read from T0547.t06.many.frag # found chain 1g5aA in training set Warning: unaligning (T0547)K222 (1g5aA)G176 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1g5aA)A179 because P (beta_P) conformation "forbidden" or filtered. T0547 218 :LKEN 1g5aA 172 :LHEA T0547 223 :LL 1g5aA 177 :IS T0547 226 :Q 1g5aA 180 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=91093 # 1rcqA.218.143 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 218 :LKE 1rcqA 144 :LRA T0547 223 :LLEQ 1rcqA 149 :KVAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=91095 # 1zl0A.218.74 read from T0547.t06.many.frag # found chain 1zl0A in training set Warning: unaligning (T0547)Q226 (1zl0A)A81 because Y (epsilon') conformation "forbidden" or filtered. T0547 218 :LKENKLLE 1zl0A 73 :AFDMPDIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=91096 # 1u9yA.218.227 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)N221 (1u9yA)Q231 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1u9yA)G232 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1u9yA)K235 because P (beta_P) conformation "forbidden" or filtered. T0547 218 :LKE 1u9yA 228 :LKE T0547 223 :LL 1u9yA 233 :AK T0547 226 :Q 1u9yA 236 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=91099 # 1ra0A.218.236 read from T0547.t06.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)K222 (1ra0A)G237 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1ra0A 233 :AHHE T0547 223 :LLEQ 1ra0A 238 :MGAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=91101 # 1u7nA.218.199 read from T0547.t06.many.frag # found chain 1u7nA in template set T0547 218 :LKENKLLEQ 1u7nA 197 :LAADETINF Number of specific fragments extracted= 1 number of extra gaps= 0 total=91102 # 1e6iA.218.24 read from T0547.t06.many.frag # found chain 1e6iA in template set T0547 218 :LKENKLLEQ 1e6iA 343 :LQNHAAAWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=91103 # 1q52A.218.75 read from T0547.t06.many.frag # found chain 1q52A in training set T0547 218 :LKENKLLEQ 1q52A 76 :ARMSPDVGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91104 # 1colA.218.65 read from T0547.t06.many.frag # found chain 1colA in template set T0547 218 :LKENKLLEQ 1colA 66 :ITANPAMKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91105 # 1ufaA.218.130 read from T0547.t06.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)K222 (1ufaA)G135 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1ufaA)V137 because Y (epsilon') conformation "forbidden" or filtered. T0547 218 :LKEN 1ufaA 131 :AEEG T0547 223 :L 1ufaA 136 :Q T0547 225 :EQ 1ufaA 138 :EL Number of specific fragments extracted= 3 number of extra gaps= 2 total=91108 # 2a2fX.218.127 read from T0547.t06.many.frag # found chain 2a2fX in template set Warning: unaligning (T0547)N221 (2a2fX)Q131 because P (beta_P) conformation "forbidden" or filtered. T0547 218 :LKE 2a2fX 128 :VFR T0547 222 :KLLEQ 2a2fX 132 :PSITL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91110 # 1q0uA.218.139 read from T0547.t06.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)K222 (1q0uA)Q144 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1q0uA 140 :FIRE T0547 223 :LLEQ 1q0uA 145 :ALDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=91112 # 1vp4A.218.178 read from T0547.t06.many.frag # found chain 1vp4A in template set T0547 218 :LKENKLLEQ 1vp4A 167 :FDKNGKIKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=91113 # 1h8eA.218.219 read from T0547.t06.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K222 (1h8eA)D224 because L (left) conformation "forbidden" or filtered. T0547 218 :LKEN 1h8eA 220 :LTDA T0547 223 :LLEQ 1h8eA 225 :AMKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=91115 # 1q5yA.218.66 read from T0547.t06.many.frag # found chain 1q5yA in training set Warning: unaligning (T0547)L223 (1q5yA)G120 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKENK 1q5yA 115 :VIAQR T0547 224 :LEQ 1q5yA 121 :VRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=91117 1txuA expands to /projects/compbio/data/pdb/1txu.pdb.gz 1txuA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1txuA.218.120 read from T0547.t06.many.frag # adding 1txuA to template set # found chain 1txuA in template set T0547 218 :LKENKLLEQ 1txuA 242 :IRALRWVTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=91118 # 1b79A.218.80 read from T0547.t06.many.frag # found chain 1b79A in template set T0547 218 :LKENKLLEQ 1b79A 90 :LERQGQLDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=91119 # 2audA.218.153 read from T0547.t06.many.frag # found chain 2audA in template set T0547 218 :LKENKLLEQ 2audA 155 :MIDNKEFDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91120 # 1pa1A.218.209 read from T0547.t06.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)K222 (1pa1A)G702 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKEN 1pa1A 698 :VRES T0547 223 :LLEQ 1pa1A 703 :SLSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=91122 # 1ynfA.218.231 read from T0547.t06.many.frag # found chain 1ynfA in template set T0547 218 :LKENKLLEQ 1ynfA 221 :VARLNQVNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=91123 # 1f9yA.218.24 read from T0547.t06.many.frag # found chain 1f9yA in training set Warning: unaligning (T0547)N221 (1f9yA)I28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L223 (1f9yA)E30 because L (left) conformation "forbidden" or filtered. T0547 218 :LKE 1f9yA 25 :LGD T0547 222 :K 1f9yA 29 :P T0547 224 :LEQ 1f9yA 31 :SHI Number of specific fragments extracted= 3 number of extra gaps= 2 total=91126 # 1yvvA.218.71 read from T0547.t06.many.frag # found chain 1yvvA in template set Warning: unaligning (T0547)K222 (1yvvA)G76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1yvvA)A79 because Y (epsilon') conformation "forbidden" or filtered. T0547 218 :LKEN 1yvvA 72 :WQAQ T0547 223 :LL 1yvvA 77 :HV T0547 226 :Q 1yvvA 80 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=91129 # 1r0vA.218.188 read from T0547.t06.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)K222 (1r0vA)G193 because T (delta_L) conformation "forbidden" or filtered. T0547 218 :LKEN 1r0vA 189 :LLDL T0547 223 :LLEQ 1r0vA 194 :KLNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91131 # 2bhuA.218.201 read from T0547.t06.many.frag # found chain 2bhuA in training set T0547 218 :LKENKLLEQ 2bhuA 202 :AHRLGLGVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=91132 # 1qd1A.219.26 read from T0547.t06.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)K222 (1qd1A)P31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L223 (1qd1A)G32 because T (delta_L) conformation "forbidden" or filtered. T0547 219 :KEN 1qd1A 28 :AQT T0547 224 :LEQF 1qd1A 33 :CVLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91134 # 1wb4A.219.243 read from T0547.t06.many.frag # found chain 1wb4A in training set T0547 219 :KENKLLEQF 1wb4A 1032 :KALPHFDYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=91135 # 1o8bA.219.186 read from T0547.t06.many.frag # found chain 1o8bA in training set Warning: unaligning (T0547)L223 (1o8bA)G191 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1o8bA)T194 because E (beta_S) conformation "forbidden" or filtered. T0547 219 :KENK 1o8bA 187 :NAIP T0547 224 :LE 1o8bA 192 :VV T0547 227 :F 1o8bA 195 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=91138 # 1w6gA.219.25 read from T0547.t06.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)E225 (1w6gA)G34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F227 (1w6gA)E36 because G (3-10) conformation "forbidden" or filtered. T0547 219 :KENKLL 1w6gA 28 :RTAGLL T0547 226 :Q 1w6gA 35 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=91140 # 1u7nA.219.200 read from T0547.t06.many.frag # found chain 1u7nA in template set T0547 219 :KENKLLEQF 1u7nA 198 :AADETINFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91141 # 1q0uA.219.140 read from T0547.t06.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)K222 (1q0uA)Q144 because L (left) conformation "forbidden" or filtered. T0547 219 :KEN 1q0uA 141 :IRE T0547 223 :LLEQF 1q0uA 145 :ALDVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=91143 # 2fn0A.219.86 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)Q226 (2fn0A)G91 because T (delta_L) conformation "forbidden" or filtered. T0547 219 :KENKLLE 2fn0A 84 :MAHPQVK T0547 227 :F 2fn0A 92 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=91145 # 2nacA.219.108 read from T0547.t06.many.frag # found chain 2nacA in template set T0547 219 :KENKLLEQF 2nacA 109 :AKAKNLKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=91146 # 2b2aA.219.32 read from T0547.t06.many.frag # found chain 2b2aA in template set T0547 219 :KENKLLEQF 2b2aA 25 :KQISALKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91147 # 1ufaA.219.131 read from T0547.t06.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)K222 (1ufaA)G135 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1ufaA)V137 because Y (epsilon') conformation "forbidden" or filtered. T0547 219 :KEN 1ufaA 132 :EEG T0547 223 :L 1ufaA 136 :Q T0547 225 :EQF 1ufaA 138 :ELI Number of specific fragments extracted= 3 number of extra gaps= 2 total=91150 # 1rcqA.219.144 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 T0547 219 :KE 1rcqA 145 :RA T0547 223 :LLEQF 1rcqA 149 :KVAKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=91152 # 1zl0A.219.75 read from T0547.t06.many.frag # found chain 1zl0A in training set T0547 219 :KENKLLEQF 1zl0A 74 :FDMPDITAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91153 # 1r0vA.219.189 read from T0547.t06.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)K222 (1r0vA)G193 because T (delta_L) conformation "forbidden" or filtered. T0547 219 :KEN 1r0vA 190 :LDL T0547 223 :LLEQF 1r0vA 194 :KLNLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91155 # 1jl0A.219.98 read from T0547.t06.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)L223 (1jl0A)G103 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1jl0A)S106 because Y (epsilon') conformation "forbidden" or filtered. T0547 219 :KENK 1jl0A 99 :RDYS T0547 224 :LE 1jl0A 104 :FD T0547 227 :F 1jl0A 107 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=91158 # 1q5yA.219.67 read from T0547.t06.many.frag # found chain 1q5yA in training set Warning: unaligning (T0547)L223 (1q5yA)G120 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1q5yA)H123 because L (left) conformation "forbidden" or filtered. T0547 219 :KENK 1q5yA 116 :IAQR T0547 224 :LE 1q5yA 121 :VR T0547 227 :F 1q5yA 124 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=91161 # 2a2fX.219.128 read from T0547.t06.many.frag # found chain 2a2fX in template set Warning: unaligning (T0547)E225 (2a2fX)T135 because P (beta_P) conformation "forbidden" or filtered. T0547 219 :KENKLL 2a2fX 129 :FRQPSI T0547 226 :QF 2a2fX 136 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=91163 # 1u9yA.219.228 read from T0547.t06.many.frag # found chain 1u9yA in template set T0547 219 :KENKLLEQF 1u9yA 229 :KEQGAKKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=91164 # 1g5aA.219.172 read from T0547.t06.many.frag # found chain 1g5aA in training set T0547 219 :KENKLLEQF 1g5aA 173 :HEAGISAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91165 # 1b79A.219.81 read from T0547.t06.many.frag # found chain 1b79A in template set T0547 219 :KENKLLEQF 1b79A 91 :ERQGQLDSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91166 # 1q52A.219.76 read from T0547.t06.many.frag # found chain 1q52A in training set T0547 219 :KENKLLEQF 1q52A 77 :RMSPDVGVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91167 # 1f9yA.219.25 read from T0547.t06.many.frag # found chain 1f9yA in training set Warning: unaligning (T0547)N221 (1f9yA)I28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1f9yA)P29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1f9yA)S31 because Y (epsilon') conformation "forbidden" or filtered. T0547 219 :KE 1f9yA 26 :GD T0547 223 :L 1f9yA 30 :E T0547 225 :EQF 1f9yA 32 :HIL Number of specific fragments extracted= 3 number of extra gaps= 2 total=91170 # 1kicA.219.35 read from T0547.t06.many.frag # found chain 1kicA in training set T0547 219 :KENKLLEQF 1kicA 24 :SNTEKVRLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91171 # 1gudA.219.159 read from T0547.t06.many.frag # found chain 1gudA in training set Warning: unaligning (T0547)E225 (1gudA)K166 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F227 (1gudA)V168 because G (3-10) conformation "forbidden" or filtered. T0547 219 :KENKLL 1gudA 160 :KKASQI T0547 226 :Q 1gudA 167 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=91173 # 1ynfA.219.232 read from T0547.t06.many.frag # found chain 1ynfA in template set Warning: unaligning (T0547)L223 (1ynfA)Q226 because L (left) conformation "forbidden" or filtered. T0547 219 :KENK 1ynfA 222 :ARLN T0547 224 :LEQF 1ynfA 227 :VNPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=91175 # 1rloA.219.96 read from T0547.t06.many.frag # found chain 1rloA in template set Warning: unaligning (T0547)Q226 (1rloA)F104 because Y (epsilon') conformation "forbidden" or filtered. T0547 219 :KENKLLE 1rloA 97 :LKDKQLN T0547 227 :F 1rloA 105 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=91177 # 1lu4A.219.50 read from T0547.t06.many.frag # found chain 1lu4A in training set Warning: unaligning (T0547)N221 (1lu4A)N1053 because D (zeta) conformation "forbidden" or filtered. T0547 219 :KE 1lu4A 1051 :AA T0547 222 :KLLEQF 1lu4A 1054 :PAVTFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=91179 # 1colA.219.66 read from T0547.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0547)N221 (1colA)N69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1colA)K73 because P (beta_P) conformation "forbidden" or filtered. T0547 219 :KE 1colA 67 :TA T0547 222 :KLL 1colA 70 :PAM T0547 226 :QF 1colA 74 :IN Number of specific fragments extracted= 3 number of extra gaps= 2 total=91182 # 1h8eA.219.220 read from T0547.t06.many.frag # found chain 1h8eA in template set T0547 219 :KENKLLEQF 1h8eA 221 :TDADAMKYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=91183 # 2cu6A.219.68 read from T0547.t06.many.frag # found chain 2cu6A in template set Warning: unaligning (T0547)L223 (2cu6A)G73 because T (delta_L) conformation "forbidden" or filtered. T0547 219 :KENK 2cu6A 69 :SRLP T0547 224 :LEQF 2cu6A 74 :VEEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=91185 # 1r7jA.219.44 read from T0547.t06.many.frag # found chain 1r7jA in training set T0547 219 :KENKLLEQF 1r7jA 45 :MDLEIIRQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=91186 # 1qd1A.220.27 read from T0547.t06.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)L223 (1qd1A)G32 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T228 (1qd1A)D37 because Y (epsilon') conformation "forbidden" or filtered. T0547 220 :ENK 1qd1A 29 :QTP T0547 224 :LEQF 1qd1A 33 :CVLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=91188 # 1o8bA.220.187 read from T0547.t06.many.frag # found chain 1o8bA in training set Warning: unaligning (T0547)L223 (1o8bA)G191 because T (delta_L) conformation "forbidden" or filtered. T0547 220 :ENK 1o8bA 188 :AIP T0547 224 :LEQFT 1o8bA 192 :VVTVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=91190 # 1kicA.220.36 read from T0547.t06.many.frag # found chain 1kicA in training set T0547 220 :ENKLLEQFT 1kicA 25 :NTEKVRLIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91191 # 1u7nA.220.201 read from T0547.t06.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)T228 (1u7nA)G207 because S (epsilon) conformation "forbidden" or filtered. T0547 220 :ENKLLEQF 1u7nA 199 :ADETINFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=91192 # 1q0uA.220.141 read from T0547.t06.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)K222 (1q0uA)Q144 because L (left) conformation "forbidden" or filtered. T0547 220 :EN 1q0uA 142 :RE T0547 223 :LLEQFT 1q0uA 145 :ALDVHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=91194 # 1wb4A.220.244 read from T0547.t06.many.frag # found chain 1wb4A in training set Warning: unaligning (T0547)E225 (1wb4A)D1038 because E (beta_S) conformation "forbidden" or filtered. T0547 220 :ENKLL 1wb4A 1033 :ALPHF T0547 226 :QFT 1wb4A 1039 :YTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=91196 # 2b2aA.220.33 read from T0547.t06.many.frag # found chain 2b2aA in template set Warning: unaligning (T0547)T228 (2b2aA)S34 because Y (epsilon') conformation "forbidden" or filtered. T0547 220 :ENKLLEQF 2b2aA 26 :QISALKYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=91197 # 2nacA.220.109 read from T0547.t06.many.frag # found chain 2nacA in template set T0547 220 :ENKLLEQFT 2nacA 110 :KAKNLKLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91198 # 1jl0A.220.99 read from T0547.t06.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)L223 (1jl0A)G103 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1jl0A)S106 because Y (epsilon') conformation "forbidden" or filtered. T0547 220 :ENK 1jl0A 100 :DYS T0547 224 :LE 1jl0A 104 :FD T0547 227 :FT 1jl0A 107 :IQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=91201 # 1ufaA.220.132 read from T0547.t06.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)L224 (1ufaA)V137 because Y (epsilon') conformation "forbidden" or filtered. T0547 220 :ENKL 1ufaA 133 :EGGQ T0547 225 :EQFT 1ufaA 138 :ELIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=91203 # 1w6gA.220.26 read from T0547.t06.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)N221 (1w6gA)A30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1w6gA)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1w6gA)G34 because P (beta_P) conformation "forbidden" or filtered. T0547 220 :E 1w6gA 29 :T T0547 223 :LL 1w6gA 32 :LL T0547 226 :QFT 1w6gA 35 :PEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=91206 # 2ex0A.220.102 read from T0547.t06.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)E220 (2ex0A)H127 because D (zeta) conformation "forbidden" or filtered. T0547 221 :NKLLEQFT 2ex0A 128 :LDRVSIQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=91207 # 1u9yA.220.229 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)K222 (1u9yA)G232 because L (left) conformation "forbidden" or filtered. T0547 220 :EN 1u9yA 230 :EQ T0547 223 :LLEQFT 1u9yA 233 :AKKIIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=91209 # 2fn0A.220.87 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)Q226 (2fn0A)G91 because T (delta_L) conformation "forbidden" or filtered. T0547 220 :ENKLLE 2fn0A 85 :AHPQVK T0547 227 :FT 2fn0A 92 :RR Number of specific fragments extracted= 2 number of extra gaps= 1 total=91211 # 1bupA.220.162 read from T0547.t06.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)K222 (1bupA)A165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L223 (1bupA)G166 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T228 (1bupA)R171 because Y (epsilon') conformation "forbidden" or filtered. T0547 220 :EN 1bupA 163 :TI T0547 224 :LEQF 1bupA 167 :LNVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=91213 # 2cx7A.220.97 read from T0547.t06.many.frag # found chain 2cx7A in training set T0547 220 :ENKLLEQFT 2cx7A 98 :MRGLLELKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=91214 # 1nar.220.180 read from T0547.t06.many.frag # found chain 1nar in training set T0547 220 :ENKLLEQFT 1nar 181 :KKDYINWVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91215 # 1uhvA.220.188 read from T0547.t06.many.frag # found chain 1uhvA in template set T0547 220 :ENKLLEQFT 1uhvA 189 :VNENLKVGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91216 # 1lu4A.220.51 read from T0547.t06.many.frag # found chain 1lu4A in training set T0547 220 :ENKLLEQFT 1lu4A 1052 :ANPAVTFVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91217 # 1q5yA.220.68 read from T0547.t06.many.frag # found chain 1q5yA in training set Warning: unaligning (T0547)N221 (1q5yA)Q118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L223 (1q5yA)G120 because T (delta_L) conformation "forbidden" or filtered. T0547 220 :E 1q5yA 117 :A T0547 222 :K 1q5yA 119 :R T0547 224 :LEQFT 1q5yA 121 :VRHGH Number of specific fragments extracted= 3 number of extra gaps= 2 total=91220 # 1gudA.220.160 read from T0547.t06.many.frag # found chain 1gudA in training set T0547 220 :ENKLLEQFT 1gudA 161 :KASQIKLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=91221 # 1b79A.220.82 read from T0547.t06.many.frag # found chain 1b79A in template set Warning: unaligning (T0547)N221 (1b79A)Q93 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K222 (1b79A)G94 because T (delta_L) conformation "forbidden" or filtered. T0547 220 :E 1b79A 92 :R T0547 223 :LLEQFT 1b79A 95 :QLDSVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=91223 # 1rcqA.220.145 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N221 because of BadResidue code BAD_PEPTIDE in next template residue (1rcqA)G148 Warning: unaligning (T0547)K222 because of BadResidue code BAD_PEPTIDE at template residue (1rcqA)G148 Warning: unaligning (T0547)Q226 (1rcqA)K152 because P (beta_P) conformation "forbidden" or filtered. T0547 220 :E 1rcqA 146 :A T0547 223 :LLE 1rcqA 149 :KVA T0547 227 :FT 1rcqA 153 :IV Number of specific fragments extracted= 3 number of extra gaps= 2 total=91226 # 1tv8A.220.91 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 220 :ENKLLEQFT 1tv8A 92 :QIDGIEDIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91227 # 1ro7A.220.66 read from T0547.t06.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)K222 (1ro7A)Q69 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1ro7A)Y71 because Y (epsilon') conformation "forbidden" or filtered. T0547 220 :EN 1ro7A 67 :QN T0547 223 :L 1ro7A 70 :E T0547 225 :EQFT 1ro7A 72 :ETEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=91230 # 2f6uA.220.117 read from T0547.t06.many.frag # found chain 2f6uA in training set T0547 220 :ENKLLEQFT 2f6uA 1115 :ESEFIQIEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91231 # 1r0mA.220.258 read from T0547.t06.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)Q226 (1r0mA)V265 because E (beta_S) conformation "forbidden" or filtered. T0547 220 :ENKLLE 1r0mA 259 :ALGAGG T0547 227 :FT 1r0mA 266 :IN Number of specific fragments extracted= 2 number of extra gaps= 1 total=91233 # 1zl0A.220.76 read from T0547.t06.many.frag # found chain 1zl0A in training set Warning: unaligning (T0547)Q226 (1zl0A)A81 because Y (epsilon') conformation "forbidden" or filtered. T0547 220 :ENKLLE 1zl0A 75 :DMPDIT T0547 227 :FT 1zl0A 82 :VW Number of specific fragments extracted= 2 number of extra gaps= 1 total=91235 # 2a2fX.220.129 read from T0547.t06.many.frag # found chain 2a2fX in template set T0547 220 :ENKLLEQFT 2a2fX 130 :RQPSITLTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=91236 # 1q52A.220.77 read from T0547.t06.many.frag # found chain 1q52A in training set T0547 220 :ENKLLEQFT 1q52A 78 :MSPDVGVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91237 # 1kicA.221.37 read from T0547.t06.many.frag # found chain 1kicA in training set Warning: unaligning (T0547)E225 (1kicA)R30 because D (zeta) conformation "forbidden" or filtered. T0547 221 :NKLL 1kicA 26 :TEKV T0547 226 :QFTM 1kicA 31 :LIGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=91239 # 1u7nA.221.202 read from T0547.t06.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)E225 (1u7nA)N204 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)T228 (1u7nA)G207 because S (epsilon) conformation "forbidden" or filtered. T0547 221 :NKLL 1u7nA 200 :DETI T0547 226 :QF 1u7nA 205 :FV T0547 229 :M 1u7nA 208 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=91242 # 1o8bA.221.188 read from T0547.t06.many.frag # found chain 1o8bA in training set Warning: unaligning (T0547)N221 (1o8bA)I189 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L223 (1o8bA)G191 because T (delta_L) conformation "forbidden" or filtered. T0547 222 :K 1o8bA 190 :P T0547 224 :LEQFTM 1o8bA 192 :VVTVGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=91244 # 1bupA.221.163 read from T0547.t06.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)T228 (1bupA)R171 because Y (epsilon') conformation "forbidden" or filtered. T0547 221 :NKLLEQF 1bupA 164 :IAGLNVL T0547 229 :M 1bupA 172 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=91246 # 1uhvA.221.189 read from T0547.t06.many.frag # found chain 1uhvA in template set Warning: unaligning (T0547)M229 (1uhvA)P198 because C (cis) conformation "forbidden" or filtered. T0547 221 :NKLLEQFT 1uhvA 190 :NENLKVGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=91247 # 1qd1A.221.28 read from T0547.t06.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)L223 (1qd1A)G32 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T228 (1qd1A)D37 because Y (epsilon') conformation "forbidden" or filtered. T0547 221 :NK 1qd1A 30 :TP T0547 224 :LEQF 1qd1A 33 :CVLL T0547 229 :M 1qd1A 38 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=91250 # 1jl0A.221.100 read from T0547.t06.many.frag # found chain 1jl0A in training set T0547 221 :NKLLEQFTM 1jl0A 101 :YSGFDSIQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=91251 # 2ex0A.221.103 read from T0547.t06.many.frag # found chain 2ex0A in training set T0547 221 :NKLLEQFTM 2ex0A 128 :LDRVSIQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91252 # 1nar.221.181 read from T0547.t06.many.frag # found chain 1nar in training set T0547 221 :NKLLEQFTM 1nar 182 :KDYINWVDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=91253 # 2b2aA.221.34 read from T0547.t06.many.frag # found chain 2b2aA in template set Warning: unaligning (T0547)M229 (2b2aA)N35 because P (beta_P) conformation "forbidden" or filtered. T0547 221 :NKLLEQFT 2b2aA 27 :ISALKYVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=91254 # 1q0uA.221.142 read from T0547.t06.many.frag # found chain 1q0uA in template set T0547 221 :NKLLEQFTM 1q0uA 143 :EQALDVHTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=91255 # 2f6uA.221.118 read from T0547.t06.many.frag # found chain 2f6uA in training set T0547 221 :NKLLEQFTM 2f6uA 1116 :SEFIQIEGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=91256 # 1lu4A.221.52 read from T0547.t06.many.frag # found chain 1lu4A in training set T0547 221 :NKLLEQFTM 1lu4A 1053 :NPAVTFVGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91257 # 1ufaA.221.133 read from T0547.t06.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)K222 (1ufaA)G135 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (1ufaA)S142 because Y (epsilon') conformation "forbidden" or filtered. T0547 221 :N 1ufaA 134 :G T0547 223 :LLEQFT 1ufaA 136 :QVELIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=91259 # 1l8aA.221.507 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 221 :NKLLEQFTM 1l8aA 508 :NKSIKDRLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91260 # 2nacA.221.110 read from T0547.t06.many.frag # found chain 2nacA in template set T0547 221 :NKLLEQFTM 2nacA 111 :AKNLKLALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=91261 # 1nt2A.221.120 read from T0547.t06.many.frag # found chain 1nt2A in template set T0547 221 :NKLLEQFTM 1nt2A 121 :SGIVEKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91262 # 1gudA.221.161 read from T0547.t06.many.frag # found chain 1gudA in training set Warning: unaligning (T0547)F227 (1gudA)V168 because G (3-10) conformation "forbidden" or filtered. T0547 221 :NKLLEQ 1gudA 162 :ASQIKL T0547 228 :TM 1gudA 169 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=91264 # 1tv8A.221.92 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 221 :NKLLEQFTM 1tv8A 93 :IDGIEDIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91265 # 1qw9A.221.234 read from T0547.t06.many.frag # found chain 1qw9A in training set T0547 221 :NKLLEQFTM 1qw9A 235 :YDHVDYISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91266 # 1knwA.221.179 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L223 (1knwA)H182 because L (left) conformation "forbidden" or filtered. T0547 221 :NK 1knwA 180 :RH T0547 224 :LEQFTM 1knwA 183 :LQLVGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=91268 # 1q5yA.221.69 read from T0547.t06.many.frag # found chain 1q5yA in training set Warning: unaligning (T0547)Q226 (1q5yA)H123 because L (left) conformation "forbidden" or filtered. T0547 221 :NKLLE 1q5yA 118 :QRGVR T0547 227 :FTM 1q5yA 124 :GHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91270 # 1t4bA.221.23 read from T0547.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)K222 (1t4bA)R25 because L (left) conformation "forbidden" or filtered. T0547 221 :N 1t4bA 24 :E T0547 223 :LLEQFTM 1t4bA 26 :DFDAIRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=91272 # 1z7xW.221.225 read from T0547.t06.many.frag # found chain 1z7xW in template set T0547 221 :NKLLEQFTM 1z7xW 225 :KASLRELAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91273 # 2cx7A.221.98 read from T0547.t06.many.frag # found chain 2cx7A in training set Warning: unaligning (T0547)M229 (2cx7A)G107 because S (epsilon) conformation "forbidden" or filtered. T0547 221 :NKLLEQFT 2cx7A 99 :RGLLELKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=91274 # 2fn0A.221.88 read from T0547.t06.many.frag # found chain 2fn0A in template set T0547 221 :NKLLEQFTM 2fn0A 86 :HPQVKGRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91275 # 2cwkA.221.32 read from T0547.t06.many.frag # found chain 2cwkA in template set Warning: unaligning (T0547)L223 (2cwkA)G35 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)F227 (2cwkA)V39 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T228 (2cwkA)G40 because Y (epsilon') conformation "forbidden" or filtered. T0547 221 :NK 2cwkA 33 :KK T0547 224 :LEQ 2cwkA 36 :LKI T0547 229 :M 2cwkA 41 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=91278 # 1tjyA.221.157 read from T0547.t06.many.frag # found chain 1tjyA in training set T0547 221 :NKLLEQFTM 1tjyA 182 :HPGWEIVTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=91279 # 1musA.221.133 read from T0547.t06.many.frag # found chain 1musA in template set Warning: unaligning (T0547)L224 (1musA)F137 because L (left) conformation "forbidden" or filtered. T0547 221 :NKL 1musA 134 :ATT T0547 225 :EQFTM 1musA 138 :RTVGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91281 # 1ei9A.221.34 read from T0547.t06.many.frag # found chain 1ei9A in template set Warning: unaligning (T0547)K222 (1ei9A)P63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L223 (1ei9A)G64 because T (delta_L) conformation "forbidden" or filtered. T0547 221 :N 1ei9A 62 :I T0547 224 :LEQFTM 1ei9A 65 :IHVLSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91283 # 1bupA.222.164 read from T0547.t06.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)K222 (1bupA)A165 because G (3-10) conformation "forbidden" or filtered. T0547 223 :LLEQFTMI 1bupA 166 :GLNVLRII Number of specific fragments extracted= 1 number of extra gaps= 1 total=91284 # 1kicA.222.38 read from T0547.t06.many.frag # found chain 1kicA in training set Warning: unaligning (T0547)T228 (1kicA)G33 because Y (epsilon') conformation "forbidden" or filtered. T0547 222 :KLLEQF 1kicA 27 :EKVRLI T0547 229 :MI 1kicA 34 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91286 # 2ex0A.222.104 read from T0547.t06.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)Q226 (2ex0A)I133 because P (beta_P) conformation "forbidden" or filtered. T0547 222 :KLLE 2ex0A 129 :DRVS T0547 227 :FTMI 2ex0A 134 :QQLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=91288 # 1nt2A.222.121 read from T0547.t06.many.frag # found chain 1nt2A in template set T0547 222 :KLLEQFTMI 1nt2A 122 :GIVEKVDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91289 # 1u7nA.222.203 read from T0547.t06.many.frag # found chain 1u7nA in template set T0547 222 :KLLEQFTMI 1u7nA 201 :ETINFVGNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91290 # 1uhvA.222.190 read from T0547.t06.many.frag # found chain 1uhvA in template set Warning: unaligning (T0547)Q226 (1uhvA)V195 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (1uhvA)P198 because C (cis) conformation "forbidden" or filtered. T0547 222 :KLLE 1uhvA 191 :ENLK T0547 227 :FT 1uhvA 196 :GG T0547 230 :I 1uhvA 199 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=91293 # 1jl0A.222.101 read from T0547.t06.many.frag # found chain 1jl0A in training set Warning: unaligning (T0547)L223 (1jl0A)G103 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1jl0A)S106 because Y (epsilon') conformation "forbidden" or filtered. T0547 222 :K 1jl0A 102 :S T0547 224 :LE 1jl0A 104 :FD T0547 227 :FTMI 1jl0A 107 :IQSF Number of specific fragments extracted= 3 number of extra gaps= 2 total=91296 # 1rifA.222.220 read from T0547.t06.many.frag # found chain 1rifA in template set T0547 222 :KLLEQFTMI 1rifA 221 :EWFSQFGMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=91297 # 1q0uA.222.143 read from T0547.t06.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)I230 (1q0uA)H152 because G (3-10) conformation "forbidden" or filtered. T0547 222 :KLLEQFTM 1q0uA 144 :QALDVHTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=91298 # 1nar.222.182 read from T0547.t06.many.frag # found chain 1nar in training set T0547 222 :KLLEQFTMI 1nar 183 :DYINWVDYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=91299 # 2f6uA.222.119 read from T0547.t06.many.frag # found chain 2f6uA in training set T0547 222 :KLLEQFTMI 2f6uA 1117 :EFIQIEGYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91300 # 1byi.222.164 read from T0547.t06.many.frag # found chain 1byi in training set Warning: unaligning (T0547)E225 (1byi)T168 because P (beta_P) conformation "forbidden" or filtered. T0547 222 :KLL 1byi 165 :AGL T0547 226 :QFTMI 1byi 169 :LAGWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=91302 # 2cwkA.222.33 read from T0547.t06.many.frag # found chain 2cwkA in template set Warning: unaligning (T0547)L223 (2cwkA)G35 because T (delta_L) conformation "forbidden" or filtered. T0547 222 :K 2cwkA 34 :K T0547 224 :LEQFTMI 2cwkA 36 :LKIVGMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=91304 # 1uzeA.222.225 read from T0547.t06.many.frag # found chain 1uzeA in template set Warning: unaligning (T0547)M229 (1uzeA)P269 because P (beta_P) conformation "forbidden" or filtered. T0547 222 :KLLEQFT 1uzeA 262 :QHINLEG T0547 230 :I 1uzeA 270 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=91306 # 1musA.222.134 read from T0547.t06.many.frag # found chain 1musA in template set Warning: unaligning (T0547)T228 (1musA)G141 because Y (epsilon') conformation "forbidden" or filtered. T0547 222 :KLLEQF 1musA 135 :TTFRTV T0547 229 :MI 1musA 142 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91308 # 1knwA.222.180 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L223 (1knwA)H182 because L (left) conformation "forbidden" or filtered. T0547 222 :K 1knwA 181 :H T0547 224 :LEQFTMI 1knwA 183 :LQLVGIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=91310 # 1k8qA.222.55 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)K222 (1k8qA)G56 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1k8qA)V60 because P (beta_P) conformation "forbidden" or filtered. T0547 223 :LLE 1k8qA 57 :RRP T0547 227 :FTMI 1k8qA 61 :AFLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=91312 # 1r0mA.222.260 read from T0547.t06.many.frag # found chain 1r0mA in training set Warning: unaligning (T0547)K222 (1r0mA)G261 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1r0mA)G263 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :L 1r0mA 262 :A T0547 225 :EQFTMI 1r0mA 264 :GVINLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=91314 # 1ufaA.222.134 read from T0547.t06.many.frag # found chain 1ufaA in template set Warning: unaligning (T0547)L224 (1ufaA)V137 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (1ufaA)S142 because Y (epsilon') conformation "forbidden" or filtered. T0547 222 :KL 1ufaA 135 :GQ T0547 225 :EQFT 1ufaA 138 :ELIT T0547 230 :I 1ufaA 143 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=91317 # 1j93A.222.260 read from T0547.t06.many.frag # found chain 1j93A in template set T0547 222 :KLLEQFTMI 1j93A 260 :ERLPLTGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91318 # 1l8aA.222.508 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 222 :KLLEQFTMI 1l8aA 509 :KSIKDRLVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=91319 # 1eyeA.222.166 read from T0547.t06.many.frag # found chain 1eyeA in template set Warning: unaligning (T0547)L223 (1eyeA)G168 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (1eyeA)L174 because P (beta_P) conformation "forbidden" or filtered. T0547 222 :K 1eyeA 167 :A T0547 224 :LEQFT 1eyeA 169 :VDPAR T0547 230 :I 1eyeA 175 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=91322 # 1g8mA.222.91 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)L223 (1g8mA)D93 because L (left) conformation "forbidden" or filtered. T0547 222 :K 1g8mA 92 :Q T0547 224 :LEQFTMI 1g8mA 94 :FSLVRVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=91324 # 1lu4A.222.53 read from T0547.t06.many.frag # found chain 1lu4A in training set T0547 222 :KLLEQFTMI 1lu4A 1054 :PAVTFVGIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=91325 # 2bvcA.222.23 read from T0547.t06.many.frag # found chain 2bvcA in template set Warning: unaligning (T0547)L223 (2bvcA)K17 because L (left) conformation "forbidden" or filtered. T0547 222 :K 2bvcA 16 :E T0547 224 :LEQFTMI 2bvcA 18 :VEYVDVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=91327 # 2cu6A.222.71 read from T0547.t06.many.frag # found chain 2cu6A in template set T0547 222 :KLLEQFTMI 2cu6A 72 :PGVEEVEVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=91328 # 1t4bA.222.24 read from T0547.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)K222 (1t4bA)R25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F227 (1t4bA)I30 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLEQ 1t4bA 26 :DFDA T0547 228 :TMI 1t4bA 31 :RPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=91330 # 1qd1A.222.29 read from T0547.t06.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)K222 (1qd1A)P31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L223 (1qd1A)G32 because T (delta_L) conformation "forbidden" or filtered. T0547 224 :LEQFTMI 1qd1A 33 :CVLLDVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=91331 # 1l5aA.222.46 read from T0547.t06.many.frag # found chain 1l5aA in template set T0547 222 :KLLEQFTMI 1l5aA 47 :SEIDLFRAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=91332 # 2nacA.222.111 read from T0547.t06.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)M229 (2nacA)T119 because P (beta_P) conformation "forbidden" or filtered. T0547 222 :KLLEQFT 2nacA 112 :KNLKLAL T0547 230 :I 2nacA 120 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=91334 # 1byi.223.165 read from T0547.t06.many.frag # found chain 1byi in training set Warning: unaligning (T0547)L223 (1byi)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 224 :LEQFTMIH 1byi 167 :LTLAGWVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=91335 # 1kicA.223.39 read from T0547.t06.many.frag # found chain 1kicA in training set T0547 223 :LLEQFTMIH 1kicA 28 :KVRLIGALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=91336 # 2ex0A.223.105 read from T0547.t06.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)T228 (2ex0A)Q135 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLEQF 2ex0A 130 :RVSIQ T0547 229 :MIH 2ex0A 136 :LNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91338 # 1nt2A.223.122 read from T0547.t06.many.frag # found chain 1nt2A in template set Warning: unaligning (T0547)H231 (1nt2A)Y131 because P (beta_P) conformation "forbidden" or filtered. T0547 223 :LLEQFTMI 1nt2A 123 :IVEKVDLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=91339 # 1musA.223.135 read from T0547.t06.many.frag # found chain 1musA in template set Warning: unaligning (T0547)T228 (1musA)G141 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLEQF 1musA 136 :TFRTV T0547 229 :MIH 1musA 142 :LLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=91341 # 1rifA.223.221 read from T0547.t06.many.frag # found chain 1rifA in template set T0547 223 :LLEQFTMIH 1rifA 222 :WFSQFGMMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=91342 # 1eyeA.223.167 read from T0547.t06.many.frag # found chain 1eyeA in template set Warning: unaligning (T0547)M229 (1eyeA)L174 because P (beta_P) conformation "forbidden" or filtered. T0547 223 :LLEQFT 1eyeA 168 :GVDPAR T0547 230 :IH 1eyeA 175 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91344 # 1g8mA.223.92 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)L223 (1g8mA)D93 because L (left) conformation "forbidden" or filtered. T0547 224 :LEQFTMIH 1g8mA 94 :FSLVRVVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=91345 # 1bupA.223.165 read from T0547.t06.many.frag # found chain 1bupA in training set T0547 223 :LLEQFTMIH 1bupA 166 :GLNVLRIIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=91346 # 1ynpA.223.128 read from T0547.t06.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)L223 (1ynpA)Q109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L224 (1ynpA)T110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q226 (1ynpA)Y112 because E (beta_S) conformation "forbidden" or filtered. T0547 225 :E 1ynpA 111 :D T0547 227 :FTMIH 1ynpA 113 :IDLYQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=91348 # 1knwA.223.181 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L223 (1knwA)H182 because L (left) conformation "forbidden" or filtered. T0547 224 :LEQFTMIH 1knwA 183 :LQLVGIHM Number of specific fragments extracted= 1 number of extra gaps= 1 total=91349 # 2cwkA.223.34 read from T0547.t06.many.frag # found chain 2cwkA in template set Warning: unaligning (T0547)M229 (2cwkA)M41 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I230 (2cwkA)K42 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLEQFT 2cwkA 35 :GLKIVG T0547 231 :H 2cwkA 43 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=91351 # 1xtpA.223.185 read from T0547.t06.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)E225 (1xtpA)T188 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F227 (1xtpA)N190 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1xtpA)I193 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1xtpA)I193 T0547 223 :LL 1xtpA 186 :AL T0547 226 :Q 1xtpA 189 :P T0547 228 :T 1xtpA 191 :G T0547 231 :H 1xtpA 194 :F Number of specific fragments extracted= 4 number of extra gaps= 3 total=91355 # 1j93A.223.261 read from T0547.t06.many.frag # found chain 1j93A in template set T0547 223 :LLEQFTMIH 1j93A 261 :RLPLTGVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91356 # 1oi0A.223.61 read from T0547.t06.many.frag # found chain 1oi0A in training set T0547 223 :LLEQFTMIH 1oi0A 62 :GMKVFGTVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=91357 # 2f6uA.223.120 read from T0547.t06.many.frag # found chain 2f6uA in training set T0547 223 :LLEQFTMIH 2f6uA 1118 :FIQIEGYIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91358 # 7odcA.223.187 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)L223 (7odcA)N188 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F227 (7odcA)I192 because G (3-10) conformation "forbidden" or filtered. T0547 224 :LEQ 7odcA 189 :IDV T0547 228 :TMIH 7odcA 193 :GVSF Number of specific fragments extracted= 2 number of extra gaps= 2 total=91360 # 1q0uA.223.144 read from T0547.t06.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)I230 (1q0uA)H152 because G (3-10) conformation "forbidden" or filtered. T0547 223 :LLEQFTM 1q0uA 145 :ALDVHTA T0547 231 :H 1q0uA 153 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=91362 # 1uhvA.223.191 read from T0547.t06.many.frag # found chain 1uhvA in template set Warning: unaligning (T0547)E225 (1uhvA)K194 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T228 (1uhvA)G197 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 (1uhvA)P198 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)I230 (1uhvA)A199 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H231 (1uhvA)I200 because P (beta_P) conformation "forbidden" or filtered. T0547 223 :LL 1uhvA 192 :NL T0547 226 :QF 1uhvA 195 :VG Number of specific fragments extracted= 2 number of extra gaps= 2 total=91364 # 1qlmA.223.157 read from T0547.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)L223 (1qlmA)G158 because L (left) conformation "forbidden" or filtered. T0547 224 :LEQFTMIH 1qlmA 159 :VDPENLYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=91365 # 1odzA.223.206 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)E225 (1odzA)G246 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1odzA)L251 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1odzA)L251 T0547 223 :LL 1odzA 244 :VK T0547 226 :QFT 1odzA 247 :VRN T0547 231 :H 1odzA 252 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=91368 # 1g2qA.223.148 read from T0547.t06.many.frag # found chain 1g2qA in training set Warning: unaligning (T0547)L223 (1g2qA)E149 because L (left) conformation "forbidden" or filtered. T0547 224 :LEQFTMIH 1g2qA 150 :ANLLEYNF Number of specific fragments extracted= 1 number of extra gaps= 1 total=91369 # 1l8aA.223.509 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 223 :LLEQFTMIH 1l8aA 510 :SIKDRLVPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91370 # 1ug6A.223.209 read from T0547.t06.many.frag # found chain 1ug6A in training set Warning: unaligning (T0547)L223 (1ug6A)G210 because T (delta_L) conformation "forbidden" or filtered. T0547 224 :LEQFTMIH 1ug6A 211 :ARRVGIVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=91371 # 1jl0A.223.102 read from T0547.t06.many.frag # found chain 1jl0A in training set T0547 223 :LLEQFTMIH 1jl0A 103 :GFDSIQSFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=91372 # 1l5aA.223.47 read from T0547.t06.many.frag # found chain 1l5aA in template set T0547 223 :LLEQFTMIH 1l5aA 48 :EIDLFRARF Number of specific fragments extracted= 1 number of extra gaps= 0 total=91373 # 2anuA.223.47 read from T0547.t06.many.frag # found chain 2anuA in template set Warning: unaligning (T0547)L223 (2anuA)G36 because T (delta_L) conformation "forbidden" or filtered. T0547 224 :LEQFTMIH 2anuA 37 :VDVVSITD Number of specific fragments extracted= 1 number of extra gaps= 1 total=91374 # 1eokA.223.231 read from T0547.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0547)L223 (1eokA)K232 because L (left) conformation "forbidden" or filtered. T0547 224 :LEQFTMIH 1eokA 233 :IPASKMVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=91375 # 1vp4A.223.183 read from T0547.t06.many.frag # found chain 1vp4A in template set Warning: unaligning (T0547)M229 (1vp4A)F178 because Y (epsilon') conformation "forbidden" or filtered. T0547 223 :LLEQFT 1vp4A 172 :KIKQVK T0547 230 :IH 1vp4A 179 :IY Number of specific fragments extracted= 2 number of extra gaps= 1 total=91377 # 1chd.223.125 read from T0547.t06.many.frag # found chain 1chd in training set T0547 223 :LLEQFTMIH 1chd 272 :GRNAVGVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91378 # 1eyeA.224.168 read from T0547.t06.many.frag # found chain 1eyeA in template set T0547 224 :LEQFTMIHF 1eyeA 169 :VDPARLVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91379 # 1byi.224.166 read from T0547.t06.many.frag # found chain 1byi in training set T0547 224 :LEQFTMIHF 1byi 167 :LTLAGWVAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=91380 # 1xtpA.224.186 read from T0547.t06.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1xtpA)I193 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1xtpA)I193 T0547 224 :LEQFT 1xtpA 187 :LTPNG T0547 231 :HF 1xtpA 194 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=91382 # 1musA.224.136 read from T0547.t06.many.frag # found chain 1musA in template set Warning: unaligning (T0547)L224 (1musA)F137 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E225 (1musA)R138 because P (beta_P) conformation "forbidden" or filtered. T0547 226 :QFTMIHF 1musA 139 :TVGLLHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=91383 # 1rifA.224.222 read from T0547.t06.many.frag # found chain 1rifA in template set T0547 224 :LEQFTMIHF 1rifA 223 :FSQFGMMMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=91384 # 2f5xA.224.71 read from T0547.t06.many.frag # found chain 2f5xA in training set Warning: unaligning (T0547)Q226 (2f5xA)G62 because T (delta_L) conformation "forbidden" or filtered. T0547 224 :LE 2f5xA 60 :PD T0547 227 :FTMIHF 2f5xA 63 :YSILLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=91386 # 1oi0A.224.62 read from T0547.t06.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)T228 (1oi0A)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H231 (1oi0A)H70 because E (beta_S) conformation "forbidden" or filtered. T0547 224 :LEQF 1oi0A 63 :MKVF T0547 229 :MI 1oi0A 68 :TV T0547 232 :F 1oi0A 71 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=91389 # 1nt2A.224.123 read from T0547.t06.many.frag # found chain 1nt2A in template set T0547 224 :LEQFTMIHF 1nt2A 124 :VEKVDLIYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=91390 # 1g8mA.224.93 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)Q226 (1g8mA)L96 because P (beta_P) conformation "forbidden" or filtered. T0547 224 :LE 1g8mA 94 :FS T0547 227 :FTMIHF 1g8mA 97 :VRVVVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=91392 # 1ynpA.224.129 read from T0547.t06.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)L224 (1ynpA)T110 because Y (epsilon') conformation "forbidden" or filtered. T0547 225 :EQFTMIHF 1ynpA 111 :DYIDLYQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=91393 # 2ex0A.224.106 read from T0547.t06.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)T228 (2ex0A)Q135 because Y (epsilon') conformation "forbidden" or filtered. T0547 224 :LEQF 2ex0A 131 :VSIQ T0547 229 :MIHF 2ex0A 136 :LNLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=91395 # 1kicA.224.40 read from T0547.t06.many.frag # found chain 1kicA in training set Warning: unaligning (T0547)T228 (1kicA)G33 because Y (epsilon') conformation "forbidden" or filtered. T0547 224 :LEQF 1kicA 29 :VRLI T0547 229 :MIHF 1kicA 34 :ALCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=91397 # 1ug6A.224.210 read from T0547.t06.many.frag # found chain 1ug6A in training set T0547 224 :LEQFTMIHF 1ug6A 211 :ARRVGIVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=91398 # 1odzA.224.207 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)E225 (1odzA)G246 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1odzA)L251 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1odzA)L251 T0547 224 :L 1odzA 245 :K T0547 226 :QFT 1odzA 247 :VRN T0547 231 :HF 1odzA 252 :YA Number of specific fragments extracted= 3 number of extra gaps= 2 total=91401 # 1qlmA.224.158 read from T0547.t06.many.frag # found chain 1qlmA in template set T0547 224 :LEQFTMIHF 1qlmA 159 :VDPENLYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91402 # 1y0zA.224.57 read from T0547.t06.many.frag # found chain 1y0zA in template set T0547 224 :LEQFTMIHF 1y0zA 58 :LHESGAVLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=91403 # 1eokA.224.232 read from T0547.t06.many.frag # found chain 1eokA in training set T0547 224 :LEQFTMIHF 1eokA 233 :IPASKMVFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91404 # 1qsgA.224.84 read from T0547.t06.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)I230 (1qsgA)F88 because Y (epsilon') conformation "forbidden" or filtered. T0547 224 :LEQFTM 1qsgA 82 :WPKFDG T0547 231 :HF 1qsgA 89 :VH Number of specific fragments extracted= 2 number of extra gaps= 1 total=91406 # 1vquA.224.176 read from T0547.t06.many.frag # found chain 1vquA in template set Warning: unaligning (T0547)T228 (1vquA)G169 because T (delta_L) conformation "forbidden" or filtered. T0547 224 :LEQF 1vquA 165 :LQEV T0547 229 :MIHF 1vquA 170 :ITFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91408 # 1ppjB.224.198 read from T0547.t06.many.frag # found chain 1ppjB in template set T0547 224 :LEQFTMIHF 1ppjB 199 :FTSARMALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91409 # 1uuyA.224.68 read from T0547.t06.many.frag # found chain 1uuyA in training set T0547 224 :LEQFTMIHF 1uuyA 69 :VDEMDLILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=91410 # 1u0fA.224.257 read from T0547.t06.many.frag # found chain 1u0fA in template set T0547 224 :LEQFTMIHF 1u0fA 257 :IDPQNMLEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=91411 # 1vjoA.224.159 read from T0547.t06.many.frag # found chain 1vjoA in training set T0547 224 :LEQFTMIHF 1vjoA 148 :PAILALVHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=91412 # 8abp.224.129 read from T0547.t06.many.frag # found chain 8abp in training set T0547 224 :LEQFTMIHF 8abp 130 :WDVKESAVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=91413 # 1tqjA.224.131 read from T0547.t06.many.frag # found chain 1tqjA in training set T0547 224 :LEQFTMIHF 1tqjA 132 :LPVCDLILI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91414 # 1knwA.224.182 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 224 :LEQFTMIHF 1knwA 183 :LQLVGIHMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=91415 # 1uxoA.224.62 read from T0547.t06.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)E225 (1uxoA)H62 because Y (epsilon') conformation "forbidden" or filtered. T0547 224 :L 1uxoA 61 :L T0547 226 :QFTMIHF 1uxoA 63 :ENTYLVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=91417 # 1j93A.224.262 read from T0547.t06.many.frag # found chain 1j93A in template set T0547 224 :LEQFTMIHF 1j93A 262 :LPLTGVDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91418 # 1wraA.224.216 read from T0547.t06.many.frag # found chain 1wraA in template set T0547 224 :LEQFTMIHF 1wraA 243 :IGKVDLMKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=91419 # 1y44A.224.259 read from T0547.t06.many.frag # found chain 1y44A in template set T0547 224 :LEQFTMIHF 1y44A 260 :ARAKQLILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=91420 # 1xtpA.225.187 read from T0547.t06.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1xtpA)I193 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1xtpA)I193 T0547 225 :EQFT 1xtpA 188 :TPNG T0547 231 :HFH 1xtpA 194 :FFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=91422 # 2f5xA.225.72 read from T0547.t06.many.frag # found chain 2f5xA in training set Warning: unaligning (T0547)H233 (2f5xA)H69 because P (beta_P) conformation "forbidden" or filtered. T0547 225 :EQFTMIHF 2f5xA 61 :DGYSILLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=91423 # 1eyeA.225.169 read from T0547.t06.many.frag # found chain 1eyeA in template set T0547 225 :EQFTMIHFH 1eyeA 170 :DPARLVLDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=91424 # 1byi.225.167 read from T0547.t06.many.frag # found chain 1byi in training set T0547 225 :EQFTMIHFH 1byi 168 :TLAGWVAND Number of specific fragments extracted= 1 number of extra gaps= 0 total=91425 # 1oi0A.225.63 read from T0547.t06.many.frag # found chain 1oi0A in training set T0547 225 :EQFTMIHFH 1oi0A 64 :KVFGTVHSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=91426 # 1ynpA.225.130 read from T0547.t06.many.frag # found chain 1ynpA in training set T0547 225 :EQFTMIHFH 1ynpA 111 :DYIDLYQLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=91427 # 1nt2A.225.124 read from T0547.t06.many.frag # found chain 1nt2A in template set T0547 225 :EQFTMIHFH 1nt2A 125 :EKVDLIYQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91428 # 1g8mA.225.94 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 225 :EQFTMIHFH 1g8mA 95 :SLVRVVVCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=91429 # 1musA.225.137 read from T0547.t06.many.frag # found chain 1musA in template set Warning: unaligning (T0547)T228 (1musA)G141 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I230 (1musA)L143 because G (3-10) conformation "forbidden" or filtered. T0547 225 :EQF 1musA 138 :RTV T0547 229 :M 1musA 142 :L T0547 231 :HFH 1musA 144 :HQE Number of specific fragments extracted= 3 number of extra gaps= 2 total=91432 # 1rifA.225.223 read from T0547.t06.many.frag # found chain 1rifA in template set T0547 225 :EQFTMIHFH 1rifA 224 :SQFGMMMND Number of specific fragments extracted= 1 number of extra gaps= 0 total=91433 # 1qsgA.225.85 read from T0547.t06.many.frag # found chain 1qsgA in training set T0547 225 :EQFTMIHFH 1qsgA 83 :PKFDGFVHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=91434 # 1yq2A.225.430 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)M229 (1yq2A)I434 because P (beta_P) conformation "forbidden" or filtered. T0547 225 :EQFT 1yq2A 430 :NHPS T0547 230 :IHFH 1yq2A 435 :VMWS Number of specific fragments extracted= 2 number of extra gaps= 1 total=91436 # 1dp4A.225.231 read from T0547.t06.many.frag # found chain 1dp4A in template set T0547 225 :EQFTMIHFH 1dp4A 232 :TGEDYVFFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=91437 # 1odzA.225.208 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)E225 (1odzA)G246 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1odzA)L251 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1odzA)L251 T0547 226 :QFT 1odzA 247 :VRN T0547 231 :HFH 1odzA 252 :YAY Number of specific fragments extracted= 2 number of extra gaps= 2 total=91439 # 1ug6A.225.211 read from T0547.t06.many.frag # found chain 1ug6A in training set T0547 225 :EQFTMIHFH 1ug6A 212 :RRVGIVLNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=91440 # 1qlmA.225.159 read from T0547.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)E225 (1qlmA)D160 because P (beta_P) conformation "forbidden" or filtered. T0547 226 :QFTMIHFH 1qlmA 161 :PENLYLLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=91441 # 1vbkA.225.200 read from T0547.t06.many.frag # found chain 1vbkA in template set T0547 225 :EQFTMIHFH 1vbkA 201 :RGVEVIPVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=91442 # 1ppjB.225.199 read from T0547.t06.many.frag # found chain 1ppjB in template set Warning: unaligning (T0547)E225 (1ppjB)T200 because E (beta_S) conformation "forbidden" or filtered. T0547 226 :QFTMIHFH 1ppjB 201 :SARMALIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=91443 # 1g8kA.225.445 read from T0547.t06.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)Q226 (1g8kA)G447 because T (delta_L) conformation "forbidden" or filtered. T0547 225 :E 1g8kA 446 :K T0547 227 :FTMIHFH 1g8kA 448 :KGRIMTW Number of specific fragments extracted= 2 number of extra gaps= 1 total=91445 # 1y0zA.225.58 read from T0547.t06.many.frag # found chain 1y0zA in template set T0547 225 :EQFTMIHFH 1y0zA 59 :HESGAVLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=91446 # 1uuyA.225.69 read from T0547.t06.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)Q226 (1uuyA)E71 because L (left) conformation "forbidden" or filtered. T0547 225 :E 1uuyA 70 :D T0547 227 :FTMIHFH 1uuyA 72 :MDLILTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91448 # 1y44A.225.260 read from T0547.t06.many.frag # found chain 1y44A in template set Warning: unaligning (T0547)E225 (1y44A)R261 because L (left) conformation "forbidden" or filtered. T0547 226 :QFTMIHFH 1y44A 262 :AKQLILTH Number of specific fragments extracted= 1 number of extra gaps= 1 total=91449 # 1vjjA.225.167 read from T0547.t06.many.frag # found chain 1vjjA in template set Warning: unaligning (T0547)M229 (1vjjA)M172 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H231 (1vjjA)G174 because P (beta_P) conformation "forbidden" or filtered. T0547 225 :EQFT 1vjjA 168 :NRIG T0547 230 :I 1vjjA 173 :I T0547 232 :FH 1vjjA 175 :WN Number of specific fragments extracted= 3 number of extra gaps= 2 total=91452 # 1pswA.225.177 read from T0547.t06.many.frag # found chain 1pswA in template set Warning: unaligning (T0547)H233 (1pswA)C186 because D (zeta) conformation "forbidden" or filtered. T0547 225 :EQFTMIHF 1pswA 178 :SERPMIGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=91453 # 1vjoA.225.160 read from T0547.t06.many.frag # found chain 1vjoA in training set T0547 225 :EQFTMIHFH 1vjoA 149 :AILALVHAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=91454 # 1kicA.225.41 read from T0547.t06.many.frag # found chain 1kicA in training set T0547 225 :EQFTMIHFH 1kicA 30 :RLIGALCTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91455 # 2ex0A.225.107 read from T0547.t06.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)T228 (2ex0A)Q135 because Y (epsilon') conformation "forbidden" or filtered. T0547 225 :EQF 2ex0A 132 :SIQ T0547 229 :MIHFH 2ex0A 136 :LNLYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=91457 # 1vquA.225.177 read from T0547.t06.many.frag # found chain 1vquA in template set T0547 225 :EQFTMIHFH 1vquA 166 :QEVGITFLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=91458 # 1uxoA.225.63 read from T0547.t06.many.frag # found chain 1uxoA in training set T0547 225 :EQFTMIHFH 1uxoA 62 :HENTYLVAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=91459 # 2bw4A.225.126 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2bw4A)Y134 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2bw4A)Y134 T0547 225 :EQFTMI 2bw4A 127 :TKPGVF T0547 233 :H 2bw4A 135 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=91461 # 1xtpA.226.188 read from T0547.t06.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1xtpA)I193 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1xtpA)I193 Warning: unaligning (T0547)L234 (1xtpA)E197 because Y (epsilon') conformation "forbidden" or filtered. T0547 226 :QFT 1xtpA 189 :PNG T0547 231 :HFH 1xtpA 194 :FFK Number of specific fragments extracted= 2 number of extra gaps= 2 total=91463 # 1oi0A.226.64 read from T0547.t06.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)H233 (1oi0A)H72 because E (beta_S) conformation "forbidden" or filtered. T0547 226 :QFTMIHF 1oi0A 65 :VFGTVHS T0547 234 :L 1oi0A 73 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=91465 # 1ynpA.226.131 read from T0547.t06.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)H233 (1ynpA)H119 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1ynpA)G120 because T (delta_L) conformation "forbidden" or filtered. T0547 226 :QFTMIHF 1ynpA 112 :YIDLYQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=91466 # 1eyeA.226.170 read from T0547.t06.many.frag # found chain 1eyeA in template set Warning: unaligning (T0547)L234 (1eyeA)G179 because L (left) conformation "forbidden" or filtered. T0547 226 :QFTMIHFH 1eyeA 171 :PARLVLDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=91467 # 2f5xA.226.73 read from T0547.t06.many.frag # found chain 2f5xA in training set Warning: unaligning (T0547)H233 (2f5xA)H69 because P (beta_P) conformation "forbidden" or filtered. T0547 226 :QFTMIHF 2f5xA 62 :GYSILLM T0547 234 :L 2f5xA 70 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=91469 # 1dp4A.226.232 read from T0547.t06.many.frag # found chain 1dp4A in template set T0547 226 :QFTMIHFHL 1dp4A 233 :GEDYVFFHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91470 # 1yq2A.226.431 read from T0547.t06.many.frag # found chain 1yq2A in template set T0547 226 :QFTMIHFHL 1yq2A 431 :HPSIVMWSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91471 # 1odzA.226.209 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)Q226 (1odzA)V247 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1odzA)L251 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1odzA)L251 T0547 227 :FT 1odzA 248 :RN T0547 231 :HFHL 1odzA 252 :YAYS Number of specific fragments extracted= 2 number of extra gaps= 2 total=91473 # 1nt2A.226.125 read from T0547.t06.many.frag # found chain 1nt2A in template set T0547 226 :QFTMIHFHL 1nt2A 126 :KVDLIYQDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91474 # 1byi.226.168 read from T0547.t06.many.frag # found chain 1byi in training set T0547 226 :QFTMIHFHL 1byi 169 :LAGWVANDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91475 # 1g8mA.226.95 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 226 :QFTMIHFHL 1g8mA 96 :LVRVVVCNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91476 # 1musA.226.138 read from T0547.t06.many.frag # found chain 1musA in template set Warning: unaligning (T0547)I230 (1musA)L143 because G (3-10) conformation "forbidden" or filtered. T0547 226 :QFTM 1musA 139 :TVGL T0547 231 :HFHL 1musA 144 :HQEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=91478 # 1y44A.226.261 read from T0547.t06.many.frag # found chain 1y44A in template set Warning: unaligning (T0547)H233 (1y44A)H269 because L (left) conformation "forbidden" or filtered. T0547 226 :QFTMIHF 1y44A 262 :AKQLILT T0547 234 :L 1y44A 270 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=91480 # 1vbkA.226.201 read from T0547.t06.many.frag # found chain 1vbkA in template set T0547 226 :QFTMIHFHL 1vbkA 202 :GVEVIPVYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91481 # 1ppjB.226.200 read from T0547.t06.many.frag # found chain 1ppjB in template set T0547 226 :QFTMIHFHL 1ppjB 201 :SARMALIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91482 # 1eokA.226.234 read from T0547.t06.many.frag # found chain 1eokA in training set T0547 226 :QFTMIHFHL 1eokA 235 :ASKMVFGAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=91483 # 1pswA.226.178 read from T0547.t06.many.frag # found chain 1pswA in template set T0547 226 :QFTMIHFHL 1pswA 179 :ERPMIGFCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=91484 # 1sxrA.226.103 read from T0547.t06.many.frag # found chain 1sxrA in training set T0547 226 :QFTMIHFHL 1sxrA 104 :AIGTGIAFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91485 # 1vjoA.226.161 read from T0547.t06.many.frag # found chain 1vjoA in training set T0547 226 :QFTMIHFHL 1vjoA 150 :ILALVHAET Number of specific fragments extracted= 1 number of extra gaps= 0 total=91486 # 1g8kA.226.446 read from T0547.t06.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)T228 (1g8kA)G449 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 (1g8kA)W454 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1g8kA)W455 because D (zeta) conformation "forbidden" or filtered. T0547 226 :QF 1g8kA 447 :GK T0547 229 :MIHF 1g8kA 450 :RIMT Number of specific fragments extracted= 2 number of extra gaps= 2 total=91488 # 1qlmA.226.160 read from T0547.t06.many.frag # found chain 1qlmA in template set T0547 226 :QFTMIHFHL 1qlmA 161 :PENLYLLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=91489 # 1t71A.226.150 read from T0547.t06.many.frag # found chain 1t71A in template set T0547 226 :QFTMIHFHL 1t71A 151 :DLHIVDFHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=91490 # 7a3hA.226.93 read from T0547.t06.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 T0547 226 :QFTMIH 7a3hA 94 :IYVIID T0547 234 :L 7a3hA 102 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=91492 # 1uuyA.226.70 read from T0547.t06.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)Q226 (1uuyA)E71 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. T0547 227 :FTMIHFH 1uuyA 72 :MDLILTL Number of specific fragments extracted= 1 number of extra gaps= 2 total=91493 # 1qsgA.226.86 read from T0547.t06.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)M229 (1qsgA)G87 because S (epsilon) conformation "forbidden" or filtered. T0547 226 :QFT 1qsgA 84 :KFD T0547 230 :IHFHL 1qsgA 88 :FVHSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=91495 # 1l7dA.226.91 read from T0547.t06.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)F227 (1l7dA)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 226 :Q 1l7dA 92 :E T0547 228 :TMIHFHL 1l7dA 94 :AVLMCHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91497 # 1ug6A.226.212 read from T0547.t06.many.frag # found chain 1ug6A in training set T0547 226 :QFTMIHFHL 1ug6A 213 :RVGIVLNFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=91498 # 1vquA.226.178 read from T0547.t06.many.frag # found chain 1vquA in template set Warning: unaligning (T0547)T228 (1vquA)G169 because T (delta_L) conformation "forbidden" or filtered. T0547 226 :QF 1vquA 167 :EV T0547 229 :MIHFHL 1vquA 170 :ITFLFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=91500 # 2bw4A.226.127 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)T228 (2bw4A)G130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H231 because of BadResidue code BAD_PEPTIDE in next template residue (2bw4A)Y134 Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE at template residue (2bw4A)Y134 T0547 226 :QF 2bw4A 128 :KP T0547 229 :MI 2bw4A 131 :VF T0547 233 :HL 2bw4A 135 :HC Number of specific fragments extracted= 3 number of extra gaps= 2 total=91503 # 1rifA.226.224 read from T0547.t06.many.frag # found chain 1rifA in template set Warning: unaligning (T0547)H233 (1rifA)D232 because P (beta_P) conformation "forbidden" or filtered. T0547 226 :QFTMIHF 1rifA 225 :QFGMMMN T0547 234 :L 1rifA 233 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=91505 # 1xtpA.227.189 read from T0547.t06.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1xtpA)I193 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1xtpA)I193 Warning: unaligning (T0547)L234 (1xtpA)E197 because Y (epsilon') conformation "forbidden" or filtered. T0547 227 :FT 1xtpA 190 :NG T0547 231 :HFH 1xtpA 194 :FFK T0547 235 :G 1xtpA 198 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=91508 # 1y44A.227.262 read from T0547.t06.many.frag # found chain 1y44A in template set Warning: unaligning (T0547)G235 (1y44A)S271 because P (beta_P) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1y44A 263 :KQLILTHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=91509 # 1oi0A.227.65 read from T0547.t06.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)G235 (1oi0A)S74 because P (beta_P) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1oi0A 66 :FGTVHSHP Number of specific fragments extracted= 1 number of extra gaps= 1 total=91510 # 1yq2A.227.432 read from T0547.t06.many.frag # found chain 1yq2A in template set T0547 227 :FTMIHFHLG 1yq2A 432 :PSIVMWSLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91511 # 1odzA.227.210 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1odzA)L251 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1odzA)L251 T0547 227 :FT 1odzA 248 :RN T0547 231 :HFHLG 1odzA 252 :YAYSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=91513 # 1ynpA.227.132 read from T0547.t06.many.frag # found chain 1ynpA in training set T0547 227 :FTMIHFHLG 1ynpA 113 :IDLYQLHGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91514 # 2f5xA.227.74 read from T0547.t06.many.frag # found chain 2f5xA in training set Warning: unaligning (T0547)G235 (2f5xA)G71 because H (helix) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 2f5xA 63 :YSILLMHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=91515 # 1dp4A.227.233 read from T0547.t06.many.frag # found chain 1dp4A in template set T0547 227 :FTMIHFHLG 1dp4A 234 :EDYVFFHLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91516 # 1l7dA.227.92 read from T0547.t06.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)F232 (1l7dA)C98 because Y (epsilon') conformation "forbidden" or filtered. T0547 227 :FTMIH 1l7dA 93 :GAVLM T0547 233 :HLG 1l7dA 99 :HLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=91518 # 7a3hA.227.94 read from T0547.t06.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 T0547 227 :FTMIH 7a3hA 95 :YVIID T0547 234 :LG 7a3hA 102 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91520 # 1hp1A.227.185 read from T0547.t06.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)G235 (1hp1A)G219 because S (epsilon) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1hp1A 211 :IIIAATHM Number of specific fragments extracted= 1 number of extra gaps= 1 total=91521 # 1g8mA.227.96 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 227 :FTMIHFHLG 1g8mA 97 :VRVVVCNLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=91522 # 1sxrA.227.104 read from T0547.t06.many.frag # found chain 1sxrA in training set T0547 227 :FTMIHFHLG 1sxrA 105 :IGTGIAFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91523 # 1g8kA.227.447 read from T0547.t06.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)T228 (1g8kA)G449 because S (epsilon) conformation "forbidden" or filtered. T0547 227 :F 1g8kA 448 :K T0547 229 :MIHFHLG 1g8kA 450 :RIMTWWG Number of specific fragments extracted= 2 number of extra gaps= 1 total=91525 # 7odcA.227.190 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)M229 (7odcA)G193 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 (7odcA)H197 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (7odcA)G199 because S (epsilon) conformation "forbidden" or filtered. T0547 227 :FT 7odcA 191 :VI T0547 230 :IHF 7odcA 194 :VSF T0547 234 :L 7odcA 198 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=91528 # 1eyeA.227.171 read from T0547.t06.many.frag # found chain 1eyeA in template set T0547 227 :FTMIHFHLG 1eyeA 172 :ARLVLDPGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91529 # 1su8A.227.436 read from T0547.t06.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 T0547 227 :FTMIHFHL 1su8A 437 :IRGVCLFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=91530 # 2d81A.227.89 read from T0547.t06.many.frag # found chain 2d81A in training set Warning: unaligning (T0547)G235 (2d81A)G118 because P (beta_P) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 2d81A 110 :QRKIYMWT Number of specific fragments extracted= 1 number of extra gaps= 1 total=91531 # 2axoA.227.72 read from T0547.t06.many.frag # found chain 2axoA in training set T0547 227 :FTMIHFHLG 2axoA 73 :VVGLSYHVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91532 # 1knwA.227.184 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)M229 (1knwA)G187 because Y (epsilon') conformation "forbidden" or filtered. T0547 227 :FT 1knwA 185 :LV T0547 230 :IHFHLG 1knwA 188 :IHMHIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=91534 # 1pcxA.227.403 read from T0547.t06.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)F227 (1pcxA)A520 because T (delta_L) conformation "forbidden" or filtered. T0547 228 :TMIHFHLG 1pcxA 521 :GQTHFYPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=91535 # 1vbkA.227.202 read from T0547.t06.many.frag # found chain 1vbkA in template set T0547 227 :FTMIHFHLG 1vbkA 203 :VEVIPVYIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91536 # 1uuyA.227.71 read from T0547.t06.many.frag # found chain 1uuyA in training set T0547 227 :FTMIHFHLG 1uuyA 72 :MDLILTLGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91537 # 1musA.227.139 read from T0547.t06.many.frag # found chain 1musA in template set Warning: unaligning (T0547)I230 (1musA)L143 because G (3-10) conformation "forbidden" or filtered. T0547 227 :FTM 1musA 140 :VGL T0547 231 :HFHLG 1musA 144 :HQEWW Number of specific fragments extracted= 2 number of extra gaps= 1 total=91539 # 1cnv.227.122 read from T0547.t06.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)M229 (1cnv)G125 because Y (epsilon') conformation "forbidden" or filtered. T0547 227 :FT 1cnv 123 :LD T0547 230 :IHFHLG 1cnv 126 :IHFDIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=91541 # 1nt2A.227.126 read from T0547.t06.many.frag # found chain 1nt2A in template set Warning: unaligning (T0547)G235 (1nt2A)A135 because D (zeta) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1nt2A 127 :VDLIYQDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=91542 # 1byi.227.169 read from T0547.t06.many.frag # found chain 1byi in training set Warning: unaligning (T0547)G235 (1byi)T178 because E (beta_S) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1byi 170 :AGWVANDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=91543 # 1t71A.227.151 read from T0547.t06.many.frag # found chain 1t71A in template set Warning: unaligning (T0547)H231 (1t71A)D156 because D (zeta) conformation "forbidden" or filtered. T0547 227 :FTMI 1t71A 152 :LHIV T0547 232 :FHLG 1t71A 157 :FHAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=91545 # 1vjnA.227.166 read from T0547.t06.many.frag # found chain 1vjnA in template set Warning: unaligning (T0547)G235 (1vjnA)K163 because P (beta_P) conformation "forbidden" or filtered. T0547 227 :FTMIHFHL 1vjnA 155 :KVIIPMHY Number of specific fragments extracted= 1 number of extra gaps= 1 total=91546 # 1vjoA.227.162 read from T0547.t06.many.frag # found chain 1vjoA in training set T0547 227 :FTMIHFHLG 1vjoA 151 :LALVHAETS Number of specific fragments extracted= 1 number of extra gaps= 0 total=91547 # 7odcA.228.191 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)M229 (7odcA)G193 because Y (epsilon') conformation "forbidden" or filtered. T0547 228 :T 7odcA 192 :I T0547 230 :IHFHLGS 7odcA 194 :VSFHVGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=91549 # 1knwA.228.185 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)M229 (1knwA)G187 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 (1knwA)H191 because D (zeta) conformation "forbidden" or filtered. T0547 228 :T 1knwA 186 :V T0547 230 :IHF 1knwA 188 :IHM T0547 234 :LGS 1knwA 192 :IGS Number of specific fragments extracted= 3 number of extra gaps= 2 total=91552 # 1y44A.228.263 read from T0547.t06.many.frag # found chain 1y44A in template set Warning: unaligning (T0547)H231 (1y44A)L267 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1y44A)S271 because P (beta_P) conformation "forbidden" or filtered. T0547 228 :TMI 1y44A 264 :QLI T0547 232 :FHL 1y44A 268 :THI T0547 236 :S 1y44A 272 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=91555 # 1odzA.228.211 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1odzA)L251 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1odzA)L251 T0547 228 :T 1odzA 249 :N T0547 231 :HFHLGS 1odzA 252 :YAYSPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=91557 # 1su8A.228.437 read from T0547.t06.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)M229 (1su8A)G439 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1su8A)A444 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)C446 T0547 228 :T 1su8A 438 :R T0547 230 :IHFH 1su8A 440 :VCLF Number of specific fragments extracted= 2 number of extra gaps= 2 total=91559 # 1oi0A.228.66 read from T0547.t06.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)H231 (1oi0A)H70 because E (beta_S) conformation "forbidden" or filtered. T0547 228 :TMI 1oi0A 67 :GTV T0547 232 :FHLGS 1oi0A 71 :SHPSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=91561 # 1yq2A.228.433 read from T0547.t06.many.frag # found chain 1yq2A in template set T0547 228 :TMIHFHLGS 1yq2A 433 :SIVMWSLGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=91562 # 2d81A.228.90 read from T0547.t06.many.frag # found chain 2d81A in training set Warning: unaligning (T0547)G235 (2d81A)G118 because P (beta_P) conformation "forbidden" or filtered. T0547 228 :TMIHFHL 2d81A 111 :RKIYMWT T0547 236 :S 2d81A 119 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=91564 # 1hp1A.228.186 read from T0547.t06.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)H233 (1hp1A)H217 because D (zeta) conformation "forbidden" or filtered. T0547 228 :TMIHF 1hp1A 212 :IIAAT T0547 234 :LGS 1hp1A 218 :MGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=91566 # 1dp4A.228.234 read from T0547.t06.many.frag # found chain 1dp4A in template set Warning: unaligning (T0547)G235 (1dp4A)D242 because D (zeta) conformation "forbidden" or filtered. T0547 228 :TMIHFHL 1dp4A 235 :DYVFFHL T0547 236 :S 1dp4A 243 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=91568 # 1ynpA.228.133 read from T0547.t06.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)G235 (1ynpA)G121 because P (beta_P) conformation "forbidden" or filtered. T0547 228 :TMIHFHL 1ynpA 114 :DLYQLHG T0547 236 :S 1ynpA 122 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=91570 # 1xtpA.228.190 read from T0547.t06.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1xtpA)I193 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1xtpA)I193 T0547 228 :T 1xtpA 191 :G T0547 231 :HFHLGS 1xtpA 194 :FFKENC Number of specific fragments extracted= 2 number of extra gaps= 1 total=91572 # 2f5xA.228.75 read from T0547.t06.many.frag # found chain 2f5xA in training set T0547 228 :TMIHFHLGS 2f5xA 64 :SILLMHAGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=91573 # 1uuyA.228.72 read from T0547.t06.many.frag # found chain 1uuyA in training set T0547 228 :TMIHFHLGS 1uuyA 73 :DLILTLGGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=91574 # 1l7dA.228.93 read from T0547.t06.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)F232 (1l7dA)C98 because Y (epsilon') conformation "forbidden" or filtered. T0547 228 :TMIH 1l7dA 94 :AVLM T0547 233 :HLGS 1l7dA 99 :HLGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=91576 # 1pcxA.228.404 read from T0547.t06.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)H231 (1pcxA)H524 because E (beta_S) conformation "forbidden" or filtered. T0547 228 :TMI 1pcxA 521 :GQT T0547 232 :FHLGS 1pcxA 525 :FYPGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=91578 # 1lugA.228.89 read from T0547.t06.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)M229 (1lugA)Q92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1lugA)W97 because Y (epsilon') conformation "forbidden" or filtered. T0547 228 :T 1lugA 91 :I T0547 230 :IHFH 1lugA 93 :FHFH T0547 235 :GS 1lugA 98 :GS Number of specific fragments extracted= 3 number of extra gaps= 2 total=91581 # 2axoA.228.73 read from T0547.t06.many.frag # found chain 2axoA in training set T0547 228 :TMIHFHLGS 2axoA 74 :VGLSYHVDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=91582 # 7a3hA.228.95 read from T0547.t06.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 T0547 228 :TMIH 7a3hA 96 :VIID T0547 234 :LGS 7a3hA 102 :ILS Number of specific fragments extracted= 2 number of extra gaps= 1 total=91584 # 1y0zA.228.60 read from T0547.t06.many.frag # found chain 1y0zA in template set T0547 228 :TMIHFHLGS 1y0zA 61 :SGAVLFRGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=91585 # 1g8kA.228.448 read from T0547.t06.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)T228 (1g8kA)G449 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1g8kA)C457 because Y (epsilon') conformation "forbidden" or filtered. T0547 229 :MIHFHLG 1g8kA 450 :RIMTWWG Number of specific fragments extracted= 1 number of extra gaps= 2 total=91586 # 1onwA.228.195 read from T0547.t06.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)T228 (1onwA)G196 because L (left) conformation "forbidden" or filtered. T0547 229 :MIHFHLGS 1onwA 197 :VTVFHMGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=91587 # 1sxrA.228.105 read from T0547.t06.many.frag # found chain 1sxrA in training set T0547 228 :TMIHFHLGS 1sxrA 106 :GTGIAFIGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=91588 # 1l5oA.228.61 read from T0547.t06.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)L234 (1l5oA)A68 because Y (epsilon') conformation "forbidden" or filtered. T0547 228 :TMIHFH 1l5oA 62 :AVLVMC T0547 235 :GS 1l5oA 69 :DH Number of specific fragments extracted= 2 number of extra gaps= 1 total=91590 # 1cnv.228.123 read from T0547.t06.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)M229 (1cnv)G125 because Y (epsilon') conformation "forbidden" or filtered. T0547 228 :T 1cnv 124 :D T0547 230 :IHFHLGS 1cnv 126 :IHFDIQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=91592 # 1vbkA.228.203 read from T0547.t06.many.frag # found chain 1vbkA in template set T0547 228 :TMIHFHLGS 1vbkA 204 :EVIPVYIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=91593 # 1rkxA.228.80 read from T0547.t06.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)S236 (1rkxA)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 228 :TMIHFHLG 1rkxA 81 :PEIVFHMA Number of specific fragments extracted= 1 number of extra gaps= 1 total=91594 # 1uxoA.228.66 read from T0547.t06.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)L234 (1uxoA)S71 because S (epsilon) conformation "forbidden" or filtered. T0547 228 :TMIHFH 1uxoA 65 :TYLVAH T0547 235 :GS 1uxoA 72 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=91596 # 1vjnA.228.167 read from T0547.t06.many.frag # found chain 1vjnA in template set Warning: unaligning (T0547)H233 (1vjnA)H161 because L (left) conformation "forbidden" or filtered. T0547 228 :TMIHF 1vjnA 156 :VIIPM T0547 234 :LGS 1vjnA 162 :YKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=91598 # 1ra0A.228.244 read from T0547.t06.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)H231 (1ra0A)A244 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1ra0A)T247 because L (left) conformation "forbidden" or filtered. T0547 228 :TMI 1ra0A 241 :RVT T0547 232 :FH 1ra0A 245 :SH T0547 235 :GS 1ra0A 248 :TA Number of specific fragments extracted= 3 number of extra gaps= 2 total=91601 # 7odcA.229.192 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)M229 (7odcA)G193 because Y (epsilon') conformation "forbidden" or filtered. T0547 230 :IHFHLGSQ 7odcA 194 :VSFHVGSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=91602 # 1knwA.229.186 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)M229 (1knwA)G187 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1knwA)G195 because S (epsilon) conformation "forbidden" or filtered. T0547 230 :IHFHLGS 1knwA 188 :IHMHIGS Number of specific fragments extracted= 1 number of extra gaps= 2 total=91603 # 2d81A.229.91 read from T0547.t06.many.frag # found chain 2d81A in training set Warning: unaligning (T0547)G235 (2d81A)G118 because P (beta_P) conformation "forbidden" or filtered. T0547 229 :MIHFHL 2d81A 112 :KIYMWT T0547 236 :SQ 2d81A 119 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=91605 # 1su8A.229.438 read from T0547.t06.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)M229 (1su8A)G439 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)C446 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)N447 T0547 230 :IHFHL 1su8A 440 :VCLFA Number of specific fragments extracted= 1 number of extra gaps= 2 total=91606 # 1odzA.229.212 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1odzA)L251 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1odzA)L251 Warning: unaligning (T0547)S236 (1odzA)N257 because P (beta_P) conformation "forbidden" or filtered. T0547 231 :HFHLG 1odzA 252 :YAYSP T0547 237 :Q 1odzA 258 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=91608 # 2axoA.229.74 read from T0547.t06.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)G235 (2axoA)D81 because G (3-10) conformation "forbidden" or filtered. T0547 229 :MIHFHL 2axoA 75 :GLSYHV T0547 236 :SQ 2axoA 82 :YW Number of specific fragments extracted= 2 number of extra gaps= 1 total=91610 # 1yq2A.229.434 read from T0547.t06.many.frag # found chain 1yq2A in template set T0547 229 :MIHFHLGSQ 1yq2A 434 :IVMWSLGNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=91611 # 1y44A.229.264 read from T0547.t06.many.frag # found chain 1y44A in template set Warning: unaligning (T0547)H233 (1y44A)H269 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1y44A)S271 because P (beta_P) conformation "forbidden" or filtered. T0547 229 :MIHF 1y44A 265 :LILT T0547 234 :L 1y44A 270 :I T0547 236 :SQ 1y44A 272 :AR Number of specific fragments extracted= 3 number of extra gaps= 2 total=91614 # 1lugA.229.90 read from T0547.t06.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)L234 (1lugA)W97 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1lugA)G98 because E (beta_S) conformation "forbidden" or filtered. T0547 229 :MIHFH 1lugA 92 :QFHFH T0547 236 :SQ 1lugA 99 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91616 # 1oi0A.229.67 read from T0547.t06.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)G235 (1oi0A)S74 because P (beta_P) conformation "forbidden" or filtered. T0547 229 :MIHFHL 1oi0A 68 :TVHSHP T0547 236 :SQ 1oi0A 75 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=91618 # 1l7dA.229.94 read from T0547.t06.many.frag # found chain 1l7dA in template set T0547 229 :MIHFHLGSQ 1l7dA 95 :VLMCHLGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91619 # 1uuyA.229.73 read from T0547.t06.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)L234 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. T0547 229 :MIHFH 1uuyA 74 :LILTL T0547 235 :GSQ 1uuyA 80 :GTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=91621 # 1y0zA.229.61 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)M229 (1y0zA)G62 because T (delta_L) conformation "forbidden" or filtered. T0547 230 :IHFHLGSQ 1y0zA 63 :AVLFRGFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=91622 # 1hp1A.229.187 read from T0547.t06.many.frag # found chain 1hp1A in training set T0547 229 :MIHFHLGSQ 1hp1A 213 :IAATHMGHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=91623 # 1rifA.229.226 read from T0547.t06.many.frag # found chain 1rifA in template set T0547 229 :MIHFHLGSQ 1rifA 227 :GMMMNDECH Number of specific fragments extracted= 1 number of extra gaps= 0 total=91624 # 1cnv.229.124 read from T0547.t06.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)M229 (1cnv)G125 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H231 (1cnv)H127 because E (beta_S) conformation "forbidden" or filtered. T0547 230 :I 1cnv 126 :I T0547 232 :FHLGSQ 1cnv 128 :FDIQKP Number of specific fragments extracted= 2 number of extra gaps= 2 total=91626 # 1vhyA.229.190 read from T0547.t06.many.frag # found chain 1vhyA in template set Warning: unaligning (T0547)M229 (1vhyA)G189 because S (epsilon) conformation "forbidden" or filtered. T0547 230 :IHFHLGSQ 1vhyA 190 :VRLLIGSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=91627 # 1rkxA.229.81 read from T0547.t06.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)S236 (1rkxA)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 229 :MIHFHLG 1rkxA 82 :EIVFHMA T0547 237 :Q 1rkxA 90 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=91629 # 7a3hA.229.96 read from T0547.t06.many.frag # found chain 7a3hA in training set Warning: unaligning (T0547)F232 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)H101 Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE at template residue (7a3hA)H101 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (7a3hA)N106 T0547 229 :MIH 7a3hA 97 :IID T0547 234 :LGS 7a3hA 102 :ILS Number of specific fragments extracted= 2 number of extra gaps= 2 total=91631 # 1dp4A.229.235 read from T0547.t06.many.frag # found chain 1dp4A in template set Warning: unaligning (T0547)G235 (1dp4A)D242 because D (zeta) conformation "forbidden" or filtered. T0547 229 :MIHFHL 1dp4A 236 :YVFFHL T0547 236 :SQ 1dp4A 243 :VF Number of specific fragments extracted= 2 number of extra gaps= 1 total=91633 # 1ynpA.229.134 read from T0547.t06.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)H233 (1ynpA)H119 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1ynpA)G120 because T (delta_L) conformation "forbidden" or filtered. T0547 229 :MIHF 1ynpA 115 :LYQL T0547 235 :GSQ 1ynpA 121 :GTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=91635 # 1pcxA.229.405 read from T0547.t06.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)S236 (1pcxA)F529 because P (beta_P) conformation "forbidden" or filtered. T0547 229 :MIHFHLG 1pcxA 522 :QTHFYPG T0547 237 :Q 1pcxA 530 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=91637 # 1q74A.229.131 read from T0547.t06.many.frag # found chain 1q74A in training set Warning: unaligning (T0547)Q237 (1q74A)G140 because L (left) conformation "forbidden" or filtered. T0547 229 :MIHFHLGS 1q74A 132 :VVVTYDPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=91638 # 1onwA.229.196 read from T0547.t06.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)H233 (1onwA)H201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1onwA)G203 because P (beta_P) conformation "forbidden" or filtered. T0547 229 :MIHF 1onwA 197 :VTVF T0547 234 :L 1onwA 202 :M T0547 236 :SQ 1onwA 204 :DS Number of specific fragments extracted= 3 number of extra gaps= 2 total=91641 # 1xtpA.229.191 read from T0547.t06.many.frag # found chain 1xtpA in template set Warning: unaligning (T0547)M229 because of BadResidue code BAD_PEPTIDE in next template residue (1xtpA)I193 Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1xtpA)I193 Warning: unaligning (T0547)Q237 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xtpA)D203 T0547 231 :HFHLGS 1xtpA 194 :FFKENC Number of specific fragments extracted= 1 number of extra gaps= 1 total=91642 # 1pa1A.229.221 read from T0547.t06.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)H233 (1pa1A)H714 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1pa1A)D715 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1pa1A)G718 because L (left) conformation "forbidden" or filtered. T0547 229 :MIHF 1pa1A 710 :PVVV T0547 235 :GS 1pa1A 716 :SA Number of specific fragments extracted= 2 number of extra gaps= 2 total=91644 # 1yb0A.229.85 read from T0547.t06.many.frag # found chain 1yb0A in template set T0547 229 :MIHFHLGSQ 1yb0A 86 :SISVEICYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=91645 # 1l5oA.229.62 read from T0547.t06.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)L234 (1l5oA)A68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1l5oA)D69 because P (beta_P) conformation "forbidden" or filtered. T0547 229 :MIHFH 1l5oA 63 :VLVMC T0547 236 :SQ 1l5oA 70 :HG Number of specific fragments extracted= 2 number of extra gaps= 1 total=91647 # 1wbhA.229.131 read from T0547.t06.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)L234 (1wbhA)P136 because C (cis) conformation "forbidden" or filtered. T0547 229 :MIHFH 1wbhA 131 :EFKFF T0547 235 :GSQ 1wbhA 137 :AEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=91649 # 2b0tA.229.246 read from T0547.t06.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)H233 (2b0tA)H251 because D (zeta) conformation "forbidden" or filtered. T0547 229 :MIHF 2b0tA 247 :LFSA T0547 234 :LGSQ 2b0tA 252 :LKAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=91651 # 7odcA.230.193 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 230 :IHFHLGSQI 7odcA 194 :VSFHVGSGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=91652 # 1knwA.230.187 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)H233 (1knwA)H191 because D (zeta) conformation "forbidden" or filtered. T0547 230 :IHF 1knwA 188 :IHM T0547 234 :LGSQI 1knwA 192 :IGSGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=91654 # 2d81A.230.92 read from T0547.t06.many.frag # found chain 2d81A in training set T0547 230 :IHFHLGSQI 2d81A 113 :IYMWTGSSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91655 # 1su8A.230.439 read from T0547.t06.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)C446 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)N447 T0547 230 :IHFHL 1su8A 440 :VCLFA T0547 238 :I 1su8A 448 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=91657 # 1rifA.230.227 read from T0547.t06.many.frag # found chain 1rifA in template set T0547 230 :IHFHLGSQI 1rifA 228 :MMMNDECHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91658 # 1y0zA.230.62 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)S236 (1y0zA)F69 because P (beta_P) conformation "forbidden" or filtered. T0547 230 :IHFHLG 1y0zA 63 :AVLFRG T0547 237 :QI 1y0zA 70 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=91660 # 1vhyA.230.191 read from T0547.t06.many.frag # found chain 1vhyA in template set T0547 230 :IHFHLGSQI 1vhyA 190 :VRLLIGSEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91661 # 1yq2A.230.435 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)I230 (1yq2A)V435 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1yq2A)E442 because L (left) conformation "forbidden" or filtered. T0547 231 :HFHLGS 1yq2A 436 :MWSLGN T0547 238 :I 1yq2A 443 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=91663 # 1lugA.230.91 read from T0547.t06.many.frag # found chain 1lugA in training set Warning: unaligning (T0547)L234 (1lugA)W97 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1lugA)G98 because E (beta_S) conformation "forbidden" or filtered. T0547 230 :IHFH 1lugA 93 :FHFH T0547 236 :SQI 1lugA 99 :SLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=91665 # 2axoA.230.75 read from T0547.t06.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)G235 (2axoA)D81 because G (3-10) conformation "forbidden" or filtered. T0547 230 :IHFHL 2axoA 76 :LSYHV T0547 236 :SQI 2axoA 82 :YWN Number of specific fragments extracted= 2 number of extra gaps= 1 total=91667 # 1odzA.230.213 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1odzA)L251 T0547 231 :HFHLGSQI 1odzA 252 :YAYSPNNF Number of specific fragments extracted= 1 number of extra gaps= 1 total=91668 # 1rkxA.230.82 read from T0547.t06.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)S236 (1rkxA)A89 because Y (epsilon') conformation "forbidden" or filtered. T0547 230 :IHFHLG 1rkxA 83 :IVFHMA T0547 237 :QI 1rkxA 90 :QP Number of specific fragments extracted= 2 number of extra gaps= 1 total=91670 # 1y44A.230.265 read from T0547.t06.many.frag # found chain 1y44A in template set Warning: unaligning (T0547)H233 (1y44A)H269 because L (left) conformation "forbidden" or filtered. T0547 230 :IHF 1y44A 266 :ILT T0547 234 :LGSQI 1y44A 270 :ISARY Number of specific fragments extracted= 2 number of extra gaps= 1 total=91672 # 1l7dA.230.95 read from T0547.t06.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)F232 (1l7dA)C98 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1l7dA)T104 because G (3-10) conformation "forbidden" or filtered. T0547 230 :IH 1l7dA 96 :LM T0547 233 :HLGSQ 1l7dA 99 :HLGAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=91674 # 1oltA.230.207 read from T0547.t06.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)I230 because of BadResidue code BAD_PEPTIDE at template residue (1oltA)I208 Warning: unaligning (T0547)S236 (1oltA)L214 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1oltA)P215 because P (beta_P) conformation "forbidden" or filtered. T0547 231 :HFHLG 1oltA 209 :DLIYG T0547 238 :I 1oltA 216 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=91676 # 1uuyA.230.74 read from T0547.t06.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)Q237 (1uuyA)G82 because P (beta_P) conformation "forbidden" or filtered. T0547 230 :IHFHLGS 1uuyA 75 :ILTLGGT T0547 238 :I 1uuyA 83 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=91678 # 1cnv.230.125 read from T0547.t06.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)H231 (1cnv)H127 because E (beta_S) conformation "forbidden" or filtered. T0547 230 :I 1cnv 126 :I T0547 232 :FHLGSQI 1cnv 128 :FDIQKPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=91680 # 1yb0A.230.86 read from T0547.t06.many.frag # found chain 1yb0A in template set Warning: unaligning (T0547)S236 (1yb0A)Y93 because T (delta_L) conformation "forbidden" or filtered. T0547 230 :IHFHLG 1yb0A 87 :ISVEIC T0547 237 :QI 1yb0A 94 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=91682 # 1hp1A.230.188 read from T0547.t06.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)H231 (1hp1A)A215 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H233 (1hp1A)H217 because D (zeta) conformation "forbidden" or filtered. T0547 230 :I 1hp1A 214 :A T0547 232 :F 1hp1A 216 :T T0547 234 :LGSQI 1hp1A 218 :MGHYD Number of specific fragments extracted= 3 number of extra gaps= 2 total=91685 # 1pcxA.230.406 read from T0547.t06.many.frag # found chain 1pcxA in template set T0547 230 :IHFHLGSQI 1pcxA 523 :THFYPGFSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91686 # 1qw9A.230.242 read from T0547.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0547)G235 (1qw9A)G248 because Y (epsilon') conformation "forbidden" or filtered. T0547 230 :IHFHL 1qw9A 243 :LHQYY T0547 236 :SQI 1qw9A 249 :NRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=91688 # 1oi0A.230.68 read from T0547.t06.many.frag # found chain 1oi0A in training set Warning: unaligning (T0547)G235 (1oi0A)S74 because P (beta_P) conformation "forbidden" or filtered. T0547 230 :IHFHL 1oi0A 69 :VHSHP T0547 236 :SQI 1oi0A 75 :PSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=91690 # 1pa1A.230.222 read from T0547.t06.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)L234 (1pa1A)D715 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1pa1A)G718 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1pa1A)I719 because G (3-10) conformation "forbidden" or filtered. T0547 230 :IHFH 1pa1A 711 :VVVH T0547 235 :GS 1pa1A 716 :SA Number of specific fragments extracted= 2 number of extra gaps= 2 total=91692 # 2al2A.230.368 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)H373 Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)H373 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)R374 T0547 230 :IHF 2al2A 369 :VMV T0547 236 :SQI 2al2A 375 :SGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=91694 # 1vjrA.230.234 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)G235 (1vjrA)L228 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1vjrA)G230 because Y (epsilon') conformation "forbidden" or filtered. T0547 230 :IHFHL 1vjrA 223 :VSILV T0547 236 :S 1vjrA 229 :T T0547 238 :I 1vjrA 231 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=91697 # 2ajtA.230.75 read from T0547.t06.many.frag # found chain 2ajtA in template set Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2ajtA)H81 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2ajtA)H81 T0547 230 :IHFH 2ajtA 76 :LVVW T0547 236 :SQI 2ajtA 82 :TFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=91699 # 1srqA.230.189 read from T0547.t06.many.frag # found chain 1srqA in template set Warning: unaligning (T0547)H233 (1srqA)H267 because D (zeta) conformation "forbidden" or filtered. T0547 230 :IHF 1srqA 264 :IMF T0547 234 :LGSQI 1srqA 268 :VSTKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91701 # 1fcqA.230.297 read from T0547.t06.many.frag # found chain 1fcqA in training set Warning: unaligning (T0547)G235 (1fcqA)S303 because P (beta_P) conformation "forbidden" or filtered. T0547 230 :IHFHL 1fcqA 298 :FIIWG T0547 236 :SQI 1fcqA 304 :SDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=91703 # 1uf3A.230.65 read from T0547.t06.many.frag # found chain 1uf3A in template set T0547 230 :IHFHLGSQI 1uf3A 66 :TAYVPGPQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91704 # 1dp4A.230.236 read from T0547.t06.many.frag # found chain 1dp4A in template set Warning: unaligning (T0547)G235 (1dp4A)D242 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1dp4A)G245 because L (left) conformation "forbidden" or filtered. T0547 230 :IHFHL 1dp4A 237 :VFFHL T0547 236 :SQ 1dp4A 243 :VF Number of specific fragments extracted= 2 number of extra gaps= 2 total=91706 # 7odcA.231.194 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 231 :HFHLGSQIT 7odcA 195 :SFHVGSGCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=91707 # 2d81A.231.93 read from T0547.t06.many.frag # found chain 2d81A in training set T0547 231 :HFHLGSQIT 2d81A 114 :YMWTGSSDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=91708 # 1knwA.231.188 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G235 (1knwA)G193 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1knwA)G195 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1knwA)V196 because G (3-10) conformation "forbidden" or filtered. T0547 231 :HFHL 1knwA 189 :HMHI T0547 236 :S 1knwA 194 :S T0547 239 :T 1knwA 197 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=91711 # 1vjrA.231.235 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)G235 (1vjrA)L228 because G (3-10) conformation "forbidden" or filtered. T0547 231 :HFHL 1vjrA 224 :SILV T0547 236 :SQIT 1vjrA 229 :TGET Number of specific fragments extracted= 2 number of extra gaps= 1 total=91713 # 1vhyA.231.192 read from T0547.t06.many.frag # found chain 1vhyA in template set Warning: unaligning (T0547)G235 (1vhyA)G195 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T239 (1vhyA)G199 because S (epsilon) conformation "forbidden" or filtered. T0547 231 :HFHL 1vhyA 191 :RLLI T0547 236 :SQI 1vhyA 196 :SEG Number of specific fragments extracted= 2 number of extra gaps= 2 total=91715 # 1oltA.231.208 read from T0547.t06.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)S236 (1oltA)L214 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1oltA)P215 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1oltA)K216 because T (delta_L) conformation "forbidden" or filtered. T0547 231 :HFHLG 1oltA 209 :DLIYG T0547 239 :T 1oltA 217 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=91717 # 1rifA.231.228 read from T0547.t06.many.frag # found chain 1rifA in template set Warning: unaligning (T0547)I238 (1rifA)L236 because G (3-10) conformation "forbidden" or filtered. T0547 231 :HFHLGSQ 1rifA 229 :MMNDECH T0547 239 :T 1rifA 237 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=91719 # 1su8A.231.440 read from T0547.t06.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)C446 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)N447 T0547 231 :HFHL 1su8A 441 :CLFA T0547 238 :IT 1su8A 448 :NV Number of specific fragments extracted= 2 number of extra gaps= 1 total=91721 # 1uuyA.231.75 read from T0547.t06.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)I238 (1uuyA)F83 because G (3-10) conformation "forbidden" or filtered. T0547 231 :HFHLGSQ 1uuyA 76 :LTLGGTG T0547 239 :T 1uuyA 84 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=91723 # 1yb0A.231.87 read from T0547.t06.many.frag # found chain 1yb0A in template set Warning: unaligning (T0547)G235 (1yb0A)C92 because P (beta_P) conformation "forbidden" or filtered. T0547 231 :HFHL 1yb0A 88 :SVEI T0547 236 :SQIT 1yb0A 93 :YSKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=91725 # 1yq2A.231.436 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)I238 (1yq2A)S443 because G (3-10) conformation "forbidden" or filtered. T0547 231 :HFHLGSQ 1yq2A 436 :MWSLGNE T0547 239 :T 1yq2A 444 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=91727 # 1ox0A.231.120 read from T0547.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)G235 (1ox0A)A106 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1ox0A)I109 because G (3-10) conformation "forbidden" or filtered. T0547 231 :HFHL 1ox0A 102 :GVIV T0547 236 :SQ 1ox0A 107 :SG T0547 239 :T 1ox0A 110 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=91730 # 1y0zA.231.63 read from T0547.t06.many.frag # found chain 1y0zA in template set T0547 231 :HFHLGSQIT 1y0zA 64 :VLFRGFPVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=91731 # 2nacA.231.118 read from T0547.t06.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)H233 (2nacA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0547 231 :HF 2nacA 119 :TA T0547 234 :LGSQIT 2nacA 122 :IGSDHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=91733 # 1uf3A.231.66 read from T0547.t06.many.frag # found chain 1uf3A in template set T0547 231 :HFHLGSQIT 1uf3A 67 :AYVPGPQDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=91734 # 1l7dA.231.96 read from T0547.t06.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)F232 (1l7dA)C98 because Y (epsilon') conformation "forbidden" or filtered. T0547 231 :H 1l7dA 97 :M T0547 233 :HLGSQIT 1l7dA 99 :HLGALTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=91736 # 1pcxA.231.407 read from T0547.t06.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)H231 (1pcxA)H524 because E (beta_S) conformation "forbidden" or filtered. T0547 232 :FHLGSQIT 1pcxA 525 :FYPGFSGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=91737 # 1lml.231.111 read from T0547.t06.many.frag # found chain 1lml in template set Warning: unaligning (T0547)Q237 (1lml)V217 because E (beta_S) conformation "forbidden" or filtered. T0547 231 :HFHLGS 1lml 211 :VMYVAS T0547 238 :IT 1lml 218 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=91739 # 1pa1A.231.223 read from T0547.t06.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)H233 (1pa1A)H714 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L234 (1pa1A)D715 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1pa1A)G718 because L (left) conformation "forbidden" or filtered. T0547 231 :HF 1pa1A 712 :VV T0547 235 :GS 1pa1A 716 :SA T0547 238 :IT 1pa1A 719 :IG Number of specific fragments extracted= 3 number of extra gaps= 2 total=91742 # 1zcjA.231.144 read from T0547.t06.many.frag # found chain 1zcjA in template set T0547 231 :HFHLGSQIT 1zcjA 404 :FLCTNTSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91743 # 1ua4A.231.228 read from T0547.t06.many.frag # found chain 1ua4A in template set Warning: unaligning (T0547)L234 (1ua4A)S232 because Y (epsilon') conformation "forbidden" or filtered. T0547 231 :HFH 1ua4A 229 :AIL T0547 235 :GSQIT 1ua4A 233 :GLQAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91745 # 2al2A.231.369 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)H373 Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)H373 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)R374 T0547 231 :HF 2al2A 370 :MV T0547 236 :SQIT 2al2A 375 :SGET Number of specific fragments extracted= 2 number of extra gaps= 1 total=91747 # 1qw9A.231.243 read from T0547.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0547)H231 (1qw9A)H244 because E (beta_S) conformation "forbidden" or filtered. T0547 232 :FHLGSQIT 1qw9A 245 :QYYGNRDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=91748 # 1pv1A.231.51 read from T0547.t06.many.frag # found chain 1pv1A in template set Warning: unaligning (T0547)G235 (1pv1A)S56 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1pv1A)T59 because T (delta_L) conformation "forbidden" or filtered. T0547 231 :HFHL 1pv1A 52 :VFYL T0547 236 :SQ 1pv1A 57 :GL T0547 239 :T 1pv1A 60 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=91751 # 1rkxA.231.83 read from T0547.t06.many.frag # found chain 1rkxA in template set Warning: unaligning (T0547)S236 (1rkxA)A89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1rkxA)P91 because G (3-10) conformation "forbidden" or filtered. T0547 231 :HFHLG 1rkxA 84 :VFHMA T0547 237 :Q 1rkxA 90 :Q T0547 239 :T 1rkxA 92 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=91754 # 1srqA.231.190 read from T0547.t06.many.frag # found chain 1srqA in template set T0547 231 :HFHLGSQIT 1srqA 265 :MFHVSTKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=91755 # 2absA.231.212 read from T0547.t06.many.frag # found chain 2absA in training set Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0547)Q237 (2absA)A199 because Y (epsilon') conformation "forbidden" or filtered. T0547 231 :HFHL 2absA 193 :FTLN T0547 238 :IT 2absA 200 :PF Number of specific fragments extracted= 2 number of extra gaps= 1 total=91757 # 1q7zA.231.266 read from T0547.t06.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)L234 (1q7zA)G270 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1q7zA)C272 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1q7zA)G274 because T (delta_L) conformation "forbidden" or filtered. T0547 231 :HFH 1q7zA 267 :NIF T0547 235 :G 1q7zA 271 :G T0547 237 :Q 1q7zA 273 :C T0547 239 :T 1q7zA 275 :T Number of specific fragments extracted= 4 number of extra gaps= 3 total=91761 # 1l1lA.231.352 read from T0547.t06.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)L234 (1l1lA)V356 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1l1lA)D357 because Y (epsilon') conformation "forbidden" or filtered. T0547 231 :HFH 1l1lA 353 :SVA T0547 236 :SQIT 1l1lA 358 :SAFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=91763 # 1hp1A.231.189 read from T0547.t06.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)T239 (1hp1A)N223 because L (left) conformation "forbidden" or filtered. T0547 231 :HFHLGSQI 1hp1A 215 :ATHMGHYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=91764 # 7odcA.232.195 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G235 (7odcA)G199 because S (epsilon) conformation "forbidden" or filtered. T0547 232 :FHL 7odcA 196 :FHV T0547 236 :SQITE 7odcA 200 :SGCTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=91766 # 1vjrA.232.236 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)G235 (1vjrA)L228 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1vjrA)G230 because Y (epsilon') conformation "forbidden" or filtered. T0547 232 :FHL 1vjrA 225 :ILV T0547 236 :S 1vjrA 229 :T T0547 238 :ITE 1vjrA 231 :ETT Number of specific fragments extracted= 3 number of extra gaps= 2 total=91769 # 1rifA.232.229 read from T0547.t06.many.frag # found chain 1rifA in template set T0547 232 :FHLGSQITE 1rifA 230 :MNDECHLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=91770 # 2nacA.232.119 read from T0547.t06.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)I238 (2nacA)H126 because G (3-10) conformation "forbidden" or filtered. T0547 232 :FHLGSQ 2nacA 120 :AGIGSD T0547 239 :TE 2nacA 127 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=91772 # 2d81A.232.94 read from T0547.t06.many.frag # found chain 2d81A in training set Warning: unaligning (T0547)G235 (2d81A)G118 because P (beta_P) conformation "forbidden" or filtered. T0547 232 :FHL 2d81A 115 :MWT T0547 236 :SQITE 2d81A 119 :SSDTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=91774 # 1ox0A.232.121 read from T0547.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0547)I238 (1ox0A)I109 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T239 (1ox0A)G110 because S (epsilon) conformation "forbidden" or filtered. T0547 232 :FHLGSQ 1ox0A 103 :VIVASG T0547 240 :E 1ox0A 111 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=91776 # 1oltA.232.209 read from T0547.t06.many.frag # found chain 1oltA in template set T0547 232 :FHLGSQITE 1oltA 210 :LIYGLPKQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=91777 # 1yb0A.232.88 read from T0547.t06.many.frag # found chain 1yb0A in template set Warning: unaligning (T0547)G235 (1yb0A)C92 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1yb0A)G97 because S (epsilon) conformation "forbidden" or filtered. T0547 232 :FHL 1yb0A 89 :VEI T0547 236 :SQIT 1yb0A 93 :YSKS Number of specific fragments extracted= 2 number of extra gaps= 2 total=91779 # 1uf3A.232.67 read from T0547.t06.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)G235 (1uf3A)G71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 232 :FHL 1uf3A 68 :YVP T0547 236 :SQIT 1uf3A 72 :PQDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=91781 # 1qlwA.232.249 read from T0547.t06.many.frag # found chain 1qlwA in training set T0547 232 :FHLGSQITE 1qlwA 250 :VVFGDHIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=91782 # 1knwA.232.189 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)H233 (1knwA)H191 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1knwA)G195 because S (epsilon) conformation "forbidden" or filtered. T0547 232 :F 1knwA 190 :M T0547 234 :LGS 1knwA 192 :IGS T0547 238 :ITE 1knwA 196 :VDY Number of specific fragments extracted= 3 number of extra gaps= 2 total=91785 # 1uuyA.232.76 read from T0547.t06.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)L234 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. T0547 232 :FH 1uuyA 77 :TL T0547 235 :GSQITE 1uuyA 80 :GTGFTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=91787 # 1y0zA.232.64 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)S236 (1y0zA)F69 because P (beta_P) conformation "forbidden" or filtered. T0547 232 :FHLG 1y0zA 65 :LFRG T0547 237 :QITE 1y0zA 70 :PVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=91789 # 1pcxA.232.408 read from T0547.t06.many.frag # found chain 1pcxA in template set T0547 232 :FHLGSQITE 1pcxA 525 :FYPGFSGKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=91790 # 1su8A.232.441 read from T0547.t06.many.frag # found chain 1su8A in training set Warning: unaligning (T0547)L234 (1su8A)A444 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE in next template residue (1su8A)C446 Warning: unaligning (T0547)S236 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)C446 Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE at template residue (1su8A)N447 T0547 232 :FH 1su8A 442 :LF T0547 238 :ITE 1su8A 448 :NVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=91792 # 1vhyA.232.193 read from T0547.t06.many.frag # found chain 1vhyA in template set T0547 232 :FHLGSQITE 1vhyA 192 :LLIGSEGGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91793 # 1yq2A.232.437 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)Q237 (1yq2A)E442 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T239 (1yq2A)G444 because S (epsilon) conformation "forbidden" or filtered. T0547 232 :FHLGS 1yq2A 437 :WSLGN T0547 238 :I 1yq2A 443 :S T0547 240 :E 1yq2A 445 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=91796 # 1ua4A.232.229 read from T0547.t06.many.frag # found chain 1ua4A in template set Warning: unaligning (T0547)L234 (1ua4A)S232 because Y (epsilon') conformation "forbidden" or filtered. T0547 232 :FH 1ua4A 230 :IL T0547 235 :GSQITE 1ua4A 233 :GLQALT Number of specific fragments extracted= 2 number of extra gaps= 1 total=91798 # 1zcjA.232.145 read from T0547.t06.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)G235 (1zcjA)N408 because G (3-10) conformation "forbidden" or filtered. T0547 232 :FHL 1zcjA 405 :LCT T0547 236 :SQITE 1zcjA 409 :TSALN Number of specific fragments extracted= 2 number of extra gaps= 1 total=91800 # 1qw9A.232.244 read from T0547.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0547)T239 (1qw9A)N252 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1qw9A)D253 because D (zeta) conformation "forbidden" or filtered. T0547 232 :FHLGSQI 1qw9A 245 :QYYGNRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=91801 # 1s9rA.232.225 read from T0547.t06.many.frag # found chain 1s9rA in training set T0547 232 :FHLGSQITE 1s9rA 226 :VVGVSERTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91802 # 1p1xA.232.200 read from T0547.t06.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)Q237 (1p1xA)G205 because T (delta_L) conformation "forbidden" or filtered. T0547 232 :FHLGS 1p1xA 200 :FKPAG T0547 238 :ITE 1p1xA 206 :VRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=91804 # 1q7zA.232.267 read from T0547.t06.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)S236 (1q7zA)C272 because Y (epsilon') conformation "forbidden" or filtered. T0547 232 :FHLG 1q7zA 268 :IFGG T0547 237 :QITE 1q7zA 273 :CGTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=91806 # 1pv1A.232.52 read from T0547.t06.many.frag # found chain 1pv1A in template set Warning: unaligning (T0547)G235 (1pv1A)S56 because P (beta_P) conformation "forbidden" or filtered. T0547 232 :FHL 1pv1A 53 :FYL T0547 236 :SQITE 1pv1A 57 :GLTCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=91808 # 1l1lA.232.353 read from T0547.t06.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)L234 (1l1lA)V356 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1l1lA)D357 because Y (epsilon') conformation "forbidden" or filtered. T0547 232 :FH 1l1lA 354 :VA T0547 236 :SQITE 1l1lA 358 :SAFSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=91810 # 1rlr.232.303 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 232 :FHLGSQITE 1rlr 304 :LFYPMWHLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=91811 # 2al2A.232.370 read from T0547.t06.many.frag # found chain 2al2A in template set Warning: unaligning (T0547)H233 because of BadResidue code BAD_PEPTIDE in next template residue (2al2A)H373 Warning: unaligning (T0547)L234 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)H373 Warning: unaligning (T0547)G235 because of BadResidue code BAD_PEPTIDE at template residue (2al2A)R374 T0547 232 :F 2al2A 371 :V T0547 236 :SQITE 2al2A 375 :SGETE Number of specific fragments extracted= 2 number of extra gaps= 1 total=91813 # 1tca.232.35 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)Q237 (1tca)G41 because T (delta_L) conformation "forbidden" or filtered. T0547 232 :FHLGS 1tca 36 :LVPGT T0547 238 :ITE 1tca 42 :TTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=91815 # 1pa1A.232.224 read from T0547.t06.many.frag # found chain 1pa1A in template set Warning: unaligning (T0547)L234 (1pa1A)D715 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1pa1A)G718 because L (left) conformation "forbidden" or filtered. T0547 232 :FH 1pa1A 713 :VH T0547 235 :GS 1pa1A 716 :SA T0547 238 :ITE 1pa1A 719 :IGR Number of specific fragments extracted= 3 number of extra gaps= 2 total=91818 # 1lml.232.112 read from T0547.t06.many.frag # found chain 1lml in template set Warning: unaligning (T0547)G235 (1lml)A215 because E (beta_S) conformation "forbidden" or filtered. T0547 232 :FHL 1lml 212 :MYV T0547 236 :SQITE 1lml 216 :SVPSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=91820 # 7odcA.233.196 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 233 :HLGSQITEI 7odcA 197 :HVGSGCTDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=91821 # 1vjrA.233.237 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)G235 (1vjrA)L228 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1vjrA)G230 because Y (epsilon') conformation "forbidden" or filtered. T0547 233 :HL 1vjrA 226 :LV T0547 236 :S 1vjrA 229 :T T0547 238 :ITEI 1vjrA 231 :ETTP Number of specific fragments extracted= 3 number of extra gaps= 2 total=91824 # 2nacA.233.120 read from T0547.t06.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)H233 (2nacA)G121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (2nacA)H126 because G (3-10) conformation "forbidden" or filtered. T0547 234 :LGSQ 2nacA 122 :IGSD T0547 239 :TEI 2nacA 127 :VDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=91826 # 1rifA.233.230 read from T0547.t06.many.frag # found chain 1rifA in template set T0547 233 :HLGSQITEI 1rifA 231 :NDECHLATG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91827 # 1ox0A.233.122 read from T0547.t06.many.frag # found chain 1ox0A in training set T0547 233 :HLGSQITEI 1ox0A 104 :IVASGIGGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91828 # 1p1xA.233.201 read from T0547.t06.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)S236 (1p1xA)G204 because S (epsilon) conformation "forbidden" or filtered. T0547 233 :HLG 1p1xA 201 :KPA T0547 237 :QITEI 1p1xA 205 :GVRTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=91830 # 1oltA.233.210 read from T0547.t06.many.frag # found chain 1oltA in template set T0547 233 :HLGSQITEI 1oltA 211 :IYGLPKQTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=91831 # 1zcjA.233.146 read from T0547.t06.many.frag # found chain 1zcjA in template set T0547 233 :HLGSQITEI 1zcjA 406 :CTNTSALNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91832 # 1s9rA.233.226 read from T0547.t06.many.frag # found chain 1s9rA in training set T0547 233 :HLGSQITEI 1s9rA 227 :VGVSERTDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91833 # 1y0zA.233.65 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)E240 (1y0zA)S73 because Y (epsilon') conformation "forbidden" or filtered. T0547 233 :HLGSQIT 1y0zA 66 :FRGFPVN T0547 241 :I 1y0zA 74 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=91835 # 1qlwA.233.250 read from T0547.t06.many.frag # found chain 1qlwA in training set Warning: unaligning (T0547)Q237 (1qlwA)H255 because L (left) conformation "forbidden" or filtered. T0547 233 :HLGS 1qlwA 251 :VFGD T0547 238 :ITEI 1qlwA 256 :IEEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=91837 # 1dc1A.233.238 read from T0547.t06.many.frag # found chain 1dc1A in training set T0547 233 :HLGSQITEI 1dc1A 239 :GELKGGIDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=91838 # 1uf3A.233.68 read from T0547.t06.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 233 :HLGSQIT 1uf3A 69 :VPGPQDA T0547 241 :I 1uf3A 77 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=91840 # 1cliA.233.107 read from T0547.t06.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)S236 (1cliA)T111 because Y (epsilon') conformation "forbidden" or filtered. T0547 233 :HLG 1cliA 108 :YYA T0547 237 :QITEI 1cliA 112 :GKLDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=91842 # 1yb0A.233.89 read from T0547.t06.many.frag # found chain 1yb0A in template set Warning: unaligning (T0547)G235 (1yb0A)C92 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1yb0A)Y93 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1yb0A)G97 because S (epsilon) conformation "forbidden" or filtered. T0547 233 :HL 1yb0A 90 :EI T0547 237 :QIT 1yb0A 94 :SKS T0547 241 :I 1yb0A 98 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=91845 # 1q7zA.233.268 read from T0547.t06.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)G235 (1q7zA)G271 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1q7zA)C272 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1q7zA)G274 because T (delta_L) conformation "forbidden" or filtered. T0547 233 :HL 1q7zA 269 :FG T0547 237 :Q 1q7zA 273 :C T0547 239 :TEI 1q7zA 275 :TTP Number of specific fragments extracted= 3 number of extra gaps= 2 total=91848 # 1ua4A.233.230 read from T0547.t06.many.frag # found chain 1ua4A in template set Warning: unaligning (T0547)L234 (1ua4A)S232 because Y (epsilon') conformation "forbidden" or filtered. T0547 233 :H 1ua4A 231 :L T0547 235 :GSQITEI 1ua4A 233 :GLQALTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=91850 # 1l1lA.233.354 read from T0547.t06.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)L234 (1l1lA)V356 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1l1lA)D357 because Y (epsilon') conformation "forbidden" or filtered. T0547 233 :H 1l1lA 355 :A T0547 236 :SQITEI 1l1lA 358 :SAFSGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=91852 # 1efdN.233.71 read from T0547.t06.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)H233 (1efdN)W102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1efdN)A104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1efdN)S109 because P (beta_P) conformation "forbidden" or filtered. T0547 234 :L 1efdN 103 :S T0547 236 :SQIT 1efdN 105 :GYGP T0547 241 :I 1efdN 110 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=91855 # 1e0tA.233.188 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)G235 (1e0tA)A191 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1e0tA)K196 because Y (epsilon') conformation "forbidden" or filtered. T0547 233 :HL 1e0tA 189 :VA T0547 236 :SQIT 1e0tA 192 :SFIR T0547 241 :I 1e0tA 197 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=91858 # 1yq2A.233.481 read from T0547.t06.many.frag # found chain 1yq2A in template set T0547 233 :HLGSQITEI 1yq2A 481 :RMYSSIPET Number of specific fragments extracted= 1 number of extra gaps= 0 total=91859 # 1pv1A.233.53 read from T0547.t06.many.frag # found chain 1pv1A in template set Warning: unaligning (T0547)I238 (1pv1A)T59 because T (delta_L) conformation "forbidden" or filtered. T0547 233 :HLGSQ 1pv1A 54 :YLSGL T0547 239 :TEI 1pv1A 60 :CTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=91861 # 1j2rA.233.163 read from T0547.t06.many.frag # found chain 1j2rA in training set Warning: unaligning (T0547)G235 (1j2rA)A166 because G (3-10) conformation "forbidden" or filtered. T0547 233 :HL 1j2rA 164 :ED T0547 236 :SQITEI 1j2rA 167 :CSAASA Number of specific fragments extracted= 2 number of extra gaps= 1 total=91863 # 1rjdA.233.170 read from T0547.t06.many.frag # found chain 1rjdA in training set T0547 233 :HLGSQITEI 1rjdA 171 :LAACDLNDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91864 # 1pcxA.233.409 read from T0547.t06.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)E240 (1pcxA)N533 because N (gamma') conformation "forbidden" or filtered. T0547 233 :HLGSQIT 1pcxA 526 :YPGFSGK T0547 241 :I 1pcxA 534 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=91866 # 1uuyA.233.77 read from T0547.t06.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)L234 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. T0547 233 :H 1uuyA 78 :L T0547 235 :GSQITEI 1uuyA 80 :GTGFTPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=91868 # 2d81A.233.95 read from T0547.t06.many.frag # found chain 2d81A in training set Warning: unaligning (T0547)T239 (2d81A)T122 because G (3-10) conformation "forbidden" or filtered. T0547 233 :HLGSQI 2d81A 116 :WTGSSD T0547 240 :EI 2d81A 123 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=91870 # 1rqbA.233.194 read from T0547.t06.many.frag # found chain 1rqbA in template set Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rqbA)D185 Warning: unaligning (T0547)E240 (1rqbA)K191 because P (beta_P) conformation "forbidden" or filtered. T0547 235 :GSQIT 1rqbA 186 :MAALL T0547 241 :I 1rqbA 192 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=91872 # 1zxxA.233.218 read from T0547.t06.many.frag # found chain 1zxxA in template set T0547 233 :HLGSQITEI 1zxxA 219 :VVAEGVMTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=91873 # 1tca.233.36 read from T0547.t06.many.frag # found chain 1tca in training set T0547 233 :HLGSQITEI 1tca 37 :VPGTGTTGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=91874 # 7odcA.234.197 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G235 (7odcA)G199 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)T239 (7odcA)T203 because G (3-10) conformation "forbidden" or filtered. T0547 234 :L 7odcA 198 :V T0547 236 :SQI 7odcA 200 :SGC T0547 240 :EIH 7odcA 204 :DPD Number of specific fragments extracted= 3 number of extra gaps= 2 total=91877 # 1vjrA.234.238 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)G235 (1vjrA)L228 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1vjrA)T229 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1vjrA)G230 because Y (epsilon') conformation "forbidden" or filtered. T0547 234 :L 1vjrA 227 :V T0547 238 :ITEIH 1vjrA 231 :ETTPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=91879 # 2nacA.234.121 read from T0547.t06.many.frag # found chain 2nacA in template set T0547 234 :LGSQITEIH 2nacA 122 :IGSDHVDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=91880 # 1cliA.234.108 read from T0547.t06.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)G235 (1cliA)A110 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1cliA)T111 because Y (epsilon') conformation "forbidden" or filtered. T0547 234 :L 1cliA 109 :Y T0547 237 :QITEIH 1cliA 112 :GKLDVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=91882 # 1dc1A.234.239 read from T0547.t06.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)G235 (1dc1A)L241 because E (beta_S) conformation "forbidden" or filtered. T0547 234 :L 1dc1A 240 :E T0547 236 :SQITEIH 1dc1A 242 :KGGIDPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=91884 # 1rifA.234.231 read from T0547.t06.many.frag # found chain 1rifA in template set Warning: unaligning (T0547)I238 (1rifA)L236 because G (3-10) conformation "forbidden" or filtered. T0547 234 :LGSQ 1rifA 232 :DECH T0547 239 :TEIH 1rifA 237 :ATGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=91886 # 1s9rA.234.227 read from T0547.t06.many.frag # found chain 1s9rA in training set T0547 234 :LGSQITEIH 1s9rA 228 :GVSERTDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=91887 # 1p1xA.234.202 read from T0547.t06.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)G235 (1p1xA)A203 because E (beta_S) conformation "forbidden" or filtered. T0547 234 :L 1p1xA 202 :P T0547 236 :SQITEIH 1p1xA 204 :GGVRTAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=91889 # 1y0zA.234.66 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)S236 (1y0zA)F69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1y0zA)S73 because Y (epsilon') conformation "forbidden" or filtered. T0547 234 :LG 1y0zA 67 :RG T0547 237 :QIT 1y0zA 70 :PVN T0547 241 :IH 1y0zA 74 :AD Number of specific fragments extracted= 3 number of extra gaps= 2 total=91892 # 1zcjA.234.147 read from T0547.t06.many.frag # found chain 1zcjA in template set T0547 234 :LGSQITEIH 1zcjA 407 :TNTSALNVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91893 # 1ox0A.234.123 read from T0547.t06.many.frag # found chain 1ox0A in training set T0547 234 :LGSQITEIH 1ox0A 105 :VASGIGGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=91894 # 1rjdA.234.171 read from T0547.t06.many.frag # found chain 1rjdA in training set Warning: unaligning (T0547)E240 (1rjdA)D178 because D (zeta) conformation "forbidden" or filtered. T0547 234 :LGSQIT 1rjdA 172 :AACDLN T0547 241 :IH 1rjdA 179 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=91896 # 1j2rA.234.164 read from T0547.t06.many.frag # found chain 1j2rA in training set T0547 234 :LGSQITEIH 1j2rA 165 :DACSAASAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=91897 # 1uf3A.234.69 read from T0547.t06.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 234 :LGSQIT 1uf3A 70 :PGPQDA T0547 241 :IH 1uf3A 77 :IW Number of specific fragments extracted= 2 number of extra gaps= 1 total=91899 # 2fokA.234.295 read from T0547.t06.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)G235 (2fokA)A297 because Y (epsilon') conformation "forbidden" or filtered. T0547 234 :L 2fokA 296 :L T0547 236 :SQITEIH 2fokA 298 :TNLTDKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=91901 # 1oltA.234.211 read from T0547.t06.many.frag # found chain 1oltA in template set Warning: unaligning (T0547)I238 (1oltA)K216 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1oltA)T218 because E (beta_S) conformation "forbidden" or filtered. T0547 234 :LGSQ 1oltA 212 :YGLP T0547 239 :T 1oltA 217 :Q T0547 241 :IH 1oltA 219 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=91904 # 1efdN.234.72 read from T0547.t06.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)G235 (1efdN)A104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1efdN)G105 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1efdN)G107 because S (epsilon) conformation "forbidden" or filtered. T0547 234 :L 1efdN 103 :S T0547 237 :Q 1efdN 106 :Y T0547 239 :TEIH 1efdN 108 :PSPE Number of specific fragments extracted= 3 number of extra gaps= 2 total=91907 # 1l1lA.234.355 read from T0547.t06.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)L234 (1l1lA)V356 because Y (epsilon') conformation "forbidden" or filtered. T0547 235 :GSQITEIH 1l1lA 357 :DSAFSGYQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=91908 # 1qlwA.234.251 read from T0547.t06.many.frag # found chain 1qlwA in training set Warning: unaligning (T0547)G235 (1qlwA)G253 because P (beta_P) conformation "forbidden" or filtered. T0547 234 :L 1qlwA 252 :F T0547 236 :SQITEIH 1qlwA 254 :DHIEEFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=91910 # 1rqbA.234.195 read from T0547.t06.many.frag # found chain 1rqbA in template set Warning: unaligning (T0547)L234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rqbA)D185 Warning: unaligning (T0547)E240 (1rqbA)K191 because P (beta_P) conformation "forbidden" or filtered. T0547 235 :GSQIT 1rqbA 186 :MAALL T0547 241 :IH 1rqbA 192 :PQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=91912 # 1ua4A.234.231 read from T0547.t06.many.frag # found chain 1ua4A in template set Warning: unaligning (T0547)L234 (1ua4A)S232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1ua4A)T238 because E (beta_S) conformation "forbidden" or filtered. T0547 235 :GSQIT 1ua4A 233 :GLQAL T0547 241 :IH 1ua4A 239 :KE Number of specific fragments extracted= 2 number of extra gaps= 2 total=91914 # 1qg8A.234.59 read from T0547.t06.many.frag # found chain 1qg8A in training set T0547 234 :LGSQITEIH 1qg8A 61 :YQSDISGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=91915 # 1vlpA.234.189 read from T0547.t06.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)E240 (1vlpA)S184 because Y (epsilon') conformation "forbidden" or filtered. T0547 234 :LGSQIT 1vlpA 178 :GTRRRR T0547 241 :IH 1vlpA 185 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=91917 # 2c5qA.234.184 read from T0547.t06.many.frag # found chain 2c5qA in training set T0547 234 :LGSQITEIH 2c5qA 185 :IPVQETDIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=91918 # 2basA.234.177 read from T0547.t06.many.frag # found chain 2basA in template set T0547 234 :LGSQITEIH 2basA 154 :IGKESSNLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91919 # 1yq2A.234.482 read from T0547.t06.many.frag # found chain 1yq2A in template set T0547 234 :LGSQITEIH 1yq2A 482 :MYSSIPETD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91920 # 1lucA.234.190 read from T0547.t06.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)L234 (1lucA)I191 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1lucA)I195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1lucA)N197 because P (beta_P) conformation "forbidden" or filtered. T0547 235 :GSQ 1lucA 192 :LSW T0547 239 :T 1lucA 196 :I T0547 241 :IH 1lucA 198 :TH Number of specific fragments extracted= 3 number of extra gaps= 3 total=91923 # 1q7zA.234.269 read from T0547.t06.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)L234 (1q7zA)G270 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G235 (1q7zA)G271 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1q7zA)C272 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1q7zA)G274 because T (delta_L) conformation "forbidden" or filtered. T0547 237 :Q 1q7zA 273 :C T0547 239 :TEIH 1q7zA 275 :TTPE Number of specific fragments extracted= 2 number of extra gaps= 2 total=91925 # 1jixA.234.133 read from T0547.t06.many.frag # found chain 1jixA in training set Warning: unaligning (T0547)E240 (1jixA)N140 because N (gamma') conformation "forbidden" or filtered. T0547 234 :LGSQIT 1jixA 134 :VISQGI T0547 241 :IH 1jixA 141 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=91927 # 1i60A.234.68 read from T0547.t06.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)I238 (1i60A)N73 because L (left) conformation "forbidden" or filtered. T0547 234 :LGSQ 1i60A 69 :VFFN T0547 239 :TEIH 1i60A 74 :RDEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=91929 # 7odcA.235.198 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 235 :GSQITEIHP 7odcA 199 :GSGCTDPDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=91930 # 1vjrA.235.239 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)Q237 (1vjrA)G230 because Y (epsilon') conformation "forbidden" or filtered. T0547 235 :GS 1vjrA 228 :LT T0547 238 :ITEIHP 1vjrA 231 :ETTPED Number of specific fragments extracted= 2 number of extra gaps= 1 total=91932 # 1cliA.235.109 read from T0547.t06.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)S236 (1cliA)T111 because Y (epsilon') conformation "forbidden" or filtered. T0547 235 :G 1cliA 110 :A T0547 237 :QITEIHP 1cliA 112 :GKLDVDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=91934 # 1p1xA.235.203 read from T0547.t06.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)Q237 (1p1xA)G205 because T (delta_L) conformation "forbidden" or filtered. T0547 235 :GS 1p1xA 203 :AG T0547 238 :ITEIHP 1p1xA 206 :VRTAED Number of specific fragments extracted= 2 number of extra gaps= 1 total=91936 # 2nacA.235.122 read from T0547.t06.many.frag # found chain 2nacA in template set T0547 235 :GSQITEIHP 2nacA 123 :GSDHVDLQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=91937 # 1dc1A.235.240 read from T0547.t06.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)G235 (1dc1A)L241 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P243 (1dc1A)G249 because G (3-10) conformation "forbidden" or filtered. T0547 236 :SQITEIH 1dc1A 242 :KGGIDPA Number of specific fragments extracted= 1 number of extra gaps= 2 total=91938 # 1s9rA.235.228 read from T0547.t06.many.frag # found chain 1s9rA in training set Warning: unaligning (T0547)G235 (1s9rA)V229 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1s9rA)S230 because Y (epsilon') conformation "forbidden" or filtered. T0547 237 :QITEIHP 1s9rA 231 :ERTDLQT Number of specific fragments extracted= 1 number of extra gaps= 1 total=91939 # 1y0zA.235.67 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)E240 (1y0zA)S73 because Y (epsilon') conformation "forbidden" or filtered. T0547 235 :GSQIT 1y0zA 68 :GFPVN T0547 241 :IHP 1y0zA 74 :ADD Number of specific fragments extracted= 2 number of extra gaps= 1 total=91941 # 1j2rA.235.165 read from T0547.t06.many.frag # found chain 1j2rA in training set Warning: unaligning (T0547)G235 (1j2rA)A166 because G (3-10) conformation "forbidden" or filtered. T0547 236 :SQITEIHP 1j2rA 167 :CSAASAEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=91942 # 1rjdA.235.172 read from T0547.t06.many.frag # found chain 1rjdA in training set Warning: unaligning (T0547)G235 (1rjdA)A173 because P (beta_P) conformation "forbidden" or filtered. T0547 236 :SQITEIHP 1rjdA 174 :CDLNDITE Number of specific fragments extracted= 1 number of extra gaps= 1 total=91943 # 1v33A.235.69 read from T0547.t06.many.frag # found chain 1v33A in training set T0547 235 :GSQITEIHP 1v33A 50 :KNQYTDIRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=91944 # 2fokA.235.296 read from T0547.t06.many.frag # found chain 2fokA in template set T0547 235 :GSQITEIHP 2fokA 297 :ATNLTDKEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=91945 # 1uf3A.235.70 read from T0547.t06.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 235 :GSQIT 1uf3A 71 :GPQDA T0547 241 :IHP 1uf3A 77 :IWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=91947 # 1rifA.235.232 read from T0547.t06.many.frag # found chain 1rifA in template set T0547 235 :GSQITEIHP 1rifA 233 :ECHLATGKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=91948 # 1efdN.235.73 read from T0547.t06.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)G235 (1efdN)A104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S236 (1efdN)G105 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1efdN)G107 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1efdN)S109 because P (beta_P) conformation "forbidden" or filtered. T0547 237 :Q 1efdN 106 :Y T0547 239 :T 1efdN 108 :P T0547 241 :IHP 1efdN 110 :PEM Number of specific fragments extracted= 3 number of extra gaps= 3 total=91951 # 1zcjA.235.148 read from T0547.t06.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)G235 (1zcjA)N408 because G (3-10) conformation "forbidden" or filtered. T0547 236 :SQITEIHP 1zcjA 409 :TSALNVDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=91952 # 2c5qA.235.185 read from T0547.t06.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)I238 (2c5qA)E189 because G (3-10) conformation "forbidden" or filtered. T0547 235 :GSQ 2c5qA 186 :PVQ T0547 239 :TEIHP 2c5qA 190 :TDISK Number of specific fragments extracted= 2 number of extra gaps= 1 total=91954 # 3thiA.235.7 read from T0547.t06.many.frag # found chain 3thiA in template set T0547 235 :GSQITEIHP 3thiA 16 :YPYVPDPAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=91955 # 1kcfA.235.121 read from T0547.t06.many.frag # found chain 1kcfA in template set T0547 235 :GSQITEIHP 1kcfA 122 :RSGIATIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=91956 # 1vlpA.235.190 read from T0547.t06.many.frag # found chain 1vlpA in training set T0547 235 :GSQITEIHP 1vlpA 179 :TRRRRSLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=91957 # 1rqbA.235.196 read from T0547.t06.many.frag # found chain 1rqbA in template set Warning: unaligning (T0547)Q237 (1rqbA)A188 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I238 (1rqbA)L189 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1rqbA)K191 because P (beta_P) conformation "forbidden" or filtered. T0547 235 :GS 1rqbA 186 :MA T0547 239 :T 1rqbA 190 :L T0547 241 :IHP 1rqbA 192 :PQP Number of specific fragments extracted= 3 number of extra gaps= 2 total=91960 # 1p7tA.235.273 read from T0547.t06.many.frag # found chain 1p7tA in template set Warning: unaligning (T0547)G235 (1p7tA)S274 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1p7tA)D279 because Y (epsilon') conformation "forbidden" or filtered. T0547 236 :SQIT 1p7tA 275 :VAAV T0547 241 :IHP 1p7tA 280 :AED Number of specific fragments extracted= 2 number of extra gaps= 2 total=91962 # 1t1jA.235.15 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 235 :GSQITEIHP 1t1jA 9 :PYSHADAEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91963 # 1ofcX.235.158 read from T0547.t06.many.frag # found chain 1ofcX in template set T0547 235 :GSQITEIHP 1ofcX 846 :CTELQDIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=91964 # 1r0pA.235.63 read from T0547.t06.many.frag # found chain 1r0pA in training set Warning: unaligning (T0547)G235 (1r0pA)L1112 because P (beta_P) conformation "forbidden" or filtered. T0547 236 :SQITEIHP 1r0pA 1113 :NRITDIGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=91965 # 1oltA.235.212 read from T0547.t06.many.frag # found chain 1oltA in template set T0547 235 :GSQITEIHP 1oltA 213 :GLPKQTPES Number of specific fragments extracted= 1 number of extra gaps= 0 total=91966 # 1u5hA.235.181 read from T0547.t06.many.frag # found chain 1u5hA in template set T0547 235 :GSQITEIHP 1u5hA 182 :HLDILDVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=91967 # 1lucA.235.191 read from T0547.t06.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)I238 (1lucA)I195 because G (3-10) conformation "forbidden" or filtered. T0547 235 :GSQ 1lucA 192 :LSW T0547 239 :TEIHP 1lucA 196 :INTHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=91969 # 1m55A.235.94 read from T0547.t06.many.frag # found chain 1m55A in training set Warning: unaligning (T0547)I238 (1m55A)G98 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P243 (1m55A)V103 because G (3-10) conformation "forbidden" or filtered. T0547 235 :GSQ 1m55A 95 :ETS T0547 239 :TEIH 1m55A 99 :ISSM Number of specific fragments extracted= 2 number of extra gaps= 2 total=91971 # 1xubA.235.176 read from T0547.t06.many.frag # found chain 1xubA in training set T0547 235 :GSQITEIHP 1xubA 157 :FVGLPSIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=91972 # 7odcA.236.199 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 236 :SQITEIHPL 7odcA 200 :SGCTDPDTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=91973 # 1p1xA.236.204 read from T0547.t06.many.frag # found chain 1p1xA in training set Warning: unaligning (T0547)S236 (1p1xA)G204 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q237 (1p1xA)G205 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1p1xA)T208 because E (beta_S) conformation "forbidden" or filtered. T0547 238 :IT 1p1xA 206 :VR T0547 241 :IHPL 1p1xA 209 :AEDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=91975 # 1cliA.236.110 read from T0547.t06.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)S236 (1cliA)T111 because Y (epsilon') conformation "forbidden" or filtered. T0547 237 :QITEIHPL 1cliA 112 :GKLDVDTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=91976 # 1v33A.236.70 read from T0547.t06.many.frag # found chain 1v33A in training set T0547 236 :SQITEIHPL 1v33A 51 :NQYTDIRDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91977 # 1vjrA.236.240 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)Q237 (1vjrA)G230 because Y (epsilon') conformation "forbidden" or filtered. T0547 236 :S 1vjrA 229 :T T0547 238 :ITEIHPL 1vjrA 231 :ETTPEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=91979 # 1efdN.236.74 read from T0547.t06.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)Q237 (1efdN)Y106 because E (beta_S) conformation "forbidden" or filtered. T0547 236 :S 1efdN 105 :G T0547 238 :ITEIHPL 1efdN 107 :GPSPEML Number of specific fragments extracted= 2 number of extra gaps= 1 total=91981 # 1y0zA.236.68 read from T0547.t06.many.frag # found chain 1y0zA in template set T0547 236 :SQITEIHPL 1y0zA 69 :FPVNSADDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=91982 # 1uf3A.236.71 read from T0547.t06.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 236 :SQIT 1uf3A 72 :PQDA T0547 241 :IHPL 1uf3A 77 :IWEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=91984 # 2nacA.236.123 read from T0547.t06.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)I238 (2nacA)H126 because G (3-10) conformation "forbidden" or filtered. T0547 236 :SQ 2nacA 124 :SD T0547 239 :TEIHPL 2nacA 127 :VDLQSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=91986 # 1kcfA.236.122 read from T0547.t06.many.frag # found chain 1kcfA in template set Warning: unaligning (T0547)T239 (1kcfA)A126 because Y (epsilon') conformation "forbidden" or filtered. T0547 236 :SQI 1kcfA 123 :SGI T0547 240 :EIHPL 1kcfA 127 :TIPEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=91988 # 1j2rA.236.166 read from T0547.t06.many.frag # found chain 1j2rA in training set T0547 236 :SQITEIHPL 1j2rA 167 :CSAASAEQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=91989 # 1ie9A.236.175 read from T0547.t06.many.frag # found chain 1ie9A in training set T0547 236 :SQITEIHPL 1ie9A 344 :PGVQDAALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91990 # 1rjdA.236.173 read from T0547.t06.many.frag # found chain 1rjdA in training set T0547 236 :SQITEIHPL 1rjdA 174 :CDLNDITET Number of specific fragments extracted= 1 number of extra gaps= 0 total=91991 # 1dc1A.236.241 read from T0547.t06.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)P243 (1dc1A)G249 because G (3-10) conformation "forbidden" or filtered. T0547 236 :SQITEIH 1dc1A 242 :KGGIDPA T0547 244 :L 1dc1A 250 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=91993 # 1wcwA.236.199 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 236 :SQITEIHPL 1wcwA 200 :EGAKDPKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=91994 # 1ofcX.236.159 read from T0547.t06.many.frag # found chain 1ofcX in template set T0547 236 :SQITEIHPL 1ofcX 847 :TELQDIERI Number of specific fragments extracted= 1 number of extra gaps= 0 total=91995 # 1t1jA.236.16 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 236 :SQITEIHPL 1t1jA 10 :YSHADAEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=91996 # 1lucA.236.192 read from T0547.t06.many.frag # found chain 1lucA in training set T0547 236 :SQITEIHPL 1lucA 193 :SWIINTHEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=91997 # 1s9rA.236.229 read from T0547.t06.many.frag # found chain 1s9rA in training set Warning: unaligning (T0547)I238 (1s9rA)R232 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1s9rA)D234 because P (beta_P) conformation "forbidden" or filtered. T0547 236 :SQ 1s9rA 230 :SE T0547 239 :T 1s9rA 233 :T T0547 241 :IHPL 1s9rA 235 :LQTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=92000 # 1dj7A.236.27 read from T0547.t06.many.frag # found chain 1dj7A in template set Warning: unaligning (T0547)Q237 (1dj7A)F29 because P (beta_P) conformation "forbidden" or filtered. T0547 236 :S 1dj7A 28 :Y T0547 238 :ITEIHPL 1dj7A 30 :CSDLSVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=92002 # 1ccwB.236.331 read from T0547.t06.many.frag # found chain 1ccwB in training set Warning: unaligning (T0547)H242 because of BadResidue code BAD_PEPTIDE in next template residue (1ccwB)A339 Warning: unaligning (T0547)P243 because of BadResidue code BAD_PEPTIDE at template residue (1ccwB)A339 T0547 236 :SQITEI 1ccwB 332 :IGIPTK T0547 244 :L 1ccwB 340 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=92004 # 3thiA.236.8 read from T0547.t06.many.frag # found chain 3thiA in template set T0547 236 :SQITEIHPL 3thiA 17 :PYVPDPARF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92005 # 2fokA.236.297 read from T0547.t06.many.frag # found chain 2fokA in template set T0547 236 :SQITEIHPL 2fokA 298 :TNLTDKEYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92006 # 1qw2A.236.62 read from T0547.t06.many.frag # found chain 1qw2A in training set Warning: unaligning (T0547)Q237 (1qw2A)G77 because L (left) conformation "forbidden" or filtered. T0547 236 :S 1qw2A 76 :M T0547 238 :ITEIHPL 1qw2A 78 :VKTLDDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=92008 # 1p7tA.236.274 read from T0547.t06.many.frag # found chain 1p7tA in template set Warning: unaligning (T0547)E240 (1p7tA)D279 because Y (epsilon') conformation "forbidden" or filtered. T0547 236 :SQIT 1p7tA 275 :VAAV T0547 241 :IHPL 1p7tA 280 :AEDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=92010 # 1qf5A.236.148 read from T0547.t06.many.frag # found chain 1qf5A in template set T0547 236 :SQITEIHPL 1qf5A 149 :GDLFDKETF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92011 # 2c5qA.236.186 read from T0547.t06.many.frag # found chain 2c5qA in training set Warning: unaligning (T0547)I238 (2c5qA)E189 because G (3-10) conformation "forbidden" or filtered. T0547 236 :SQ 2c5qA 187 :VQ T0547 239 :TEIHPL 2c5qA 190 :TDISKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=92013 # 1t0hB.236.139 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 236 :SQITEIHPL 1t0hB 341 :VKISSPKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92014 1ezfA expands to /projects/compbio/data/pdb/1ezf.pdb.gz 1ezfA:# 1ezfA.236.129 read from T0547.t06.many.frag # adding 1ezfA to template set # found chain 1ezfA in template set T0547 236 :SQITEIHPL 1ezfA 160 :KHVTSEQEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=92015 # 1zcjA.236.149 read from T0547.t06.many.frag # found chain 1zcjA in template set Warning: unaligning (T0547)E240 (1zcjA)N413 because N (gamma') conformation "forbidden" or filtered. T0547 236 :SQIT 1zcjA 409 :TSAL T0547 241 :IHPL 1zcjA 414 :VDDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=92017 # 7odcA.237.200 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 237 :QITEIHPLK 7odcA 201 :GCTDPDTFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92018 # 1p1xA.237.205 read from T0547.t06.many.frag # found chain 1p1xA in training set T0547 237 :QITEIHPLK 1p1xA 205 :GVRTAEDAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92019 # 1cliA.237.111 read from T0547.t06.many.frag # found chain 1cliA in template set T0547 237 :QITEIHPLK 1cliA 112 :GKLDVDTAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92020 # 1v33A.237.71 read from T0547.t06.many.frag # found chain 1v33A in training set T0547 237 :QITEIHPLK 1v33A 52 :QYTDIRDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92021 # 1uf3A.237.72 read from T0547.t06.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 237 :QIT 1uf3A 73 :QDA T0547 241 :IHPLK 1uf3A 77 :IWEYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=92023 # 1j2rA.237.167 read from T0547.t06.many.frag # found chain 1j2rA in training set T0547 237 :QITEIHPLK 1j2rA 168 :SAASAEQHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92024 # 1ie9A.237.176 read from T0547.t06.many.frag # found chain 1ie9A in training set Warning: unaligning (T0547)Q237 (1ie9A)G345 because T (delta_L) conformation "forbidden" or filtered. T0547 238 :ITEIHPLK 1ie9A 346 :VQDAALIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=92025 # 1wcwA.237.200 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 237 :QITEIHPLK 1wcwA 201 :GAKDPKALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92026 # 1kcfA.237.123 read from T0547.t06.many.frag # found chain 1kcfA in template set T0547 237 :QITEIHPLK 1kcfA 124 :GIATIPEWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92027 # 1y0zA.237.69 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)E240 (1y0zA)S73 because Y (epsilon') conformation "forbidden" or filtered. T0547 237 :QIT 1y0zA 70 :PVN T0547 241 :IHPLK 1y0zA 74 :ADDFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=92029 # 1vjrA.237.241 read from T0547.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0547)Q237 (1vjrA)G230 because Y (epsilon') conformation "forbidden" or filtered. T0547 238 :ITEIHPLK 1vjrA 231 :ETTPEDLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=92030 # 1efdN.237.75 read from T0547.t06.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)I238 (1efdN)G107 because S (epsilon) conformation "forbidden" or filtered. T0547 237 :Q 1efdN 106 :Y T0547 239 :TEIHPLK 1efdN 108 :PSPEMLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=92032 # 1lucA.237.193 read from T0547.t06.many.frag # found chain 1lucA in training set T0547 237 :QITEIHPLK 1lucA 194 :WIINTHEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92033 # 1t0hB.237.140 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 237 :QITEIHPLK 1t0hB 342 :KISSPKVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92034 # 1zx4A.237.61 read from T0547.t06.many.frag # found chain 1zx4A in template set T0547 237 :QITEIHPLK 1zx4A 203 :SELTFSDYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92035 # 1ezfA.237.130 read from T0547.t06.many.frag # found chain 1ezfA in template set Warning: unaligning (T0547)Q237 (1ezfA)H161 because P (beta_P) conformation "forbidden" or filtered. T0547 238 :ITEIHPLK 1ezfA 162 :VTSEQEWD Number of specific fragments extracted= 1 number of extra gaps= 1 total=92036 # 1dj7A.237.28 read from T0547.t06.many.frag # found chain 1dj7A in template set T0547 237 :QITEIHPLK 1dj7A 29 :FCSDLSVTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92037 # 1oltA.237.214 read from T0547.t06.many.frag # found chain 1oltA in template set T0547 237 :QITEIHPLK 1oltA 215 :PKQTPESFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92038 # 1s4bP.237.268 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 237 :QITEIHPLK 1s4bP 284 :MAKTSQTVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92039 # 1hf8A.237.156 read from T0547.t06.many.frag # found chain 1hf8A in template set Warning: unaligning (T0547)E240 (1hf8A)N160 because P (beta_P) conformation "forbidden" or filtered. T0547 237 :QIT 1hf8A 157 :RTM T0547 241 :IHPLK 1hf8A 161 :TEKLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=92041 # 1nvvS.237.275 read from T0547.t06.many.frag # found chain 1nvvS in template set T0547 237 :QITEIHPLK 1nvvS 841 :ETENLEERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92042 # 1t1jA.237.17 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 237 :QITEIHPLK 1t1jA 11 :SHADAEVVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92043 # 1ccwB.237.332 read from T0547.t06.many.frag # found chain 1ccwB in training set Warning: unaligning (T0547)H242 because of BadResidue code BAD_PEPTIDE in next template residue (1ccwB)A339 Warning: unaligning (T0547)P243 because of BadResidue code BAD_PEPTIDE at template residue (1ccwB)A339 T0547 237 :QITEI 1ccwB 333 :GIPTK T0547 244 :LK 1ccwB 340 :NA Number of specific fragments extracted= 2 number of extra gaps= 1 total=92045 # 1p7tA.237.275 read from T0547.t06.many.frag # found chain 1p7tA in template set Warning: unaligning (T0547)E240 (1p7tA)D279 because Y (epsilon') conformation "forbidden" or filtered. T0547 237 :QIT 1p7tA 276 :AAV T0547 241 :IHPLK 1p7tA 280 :AEDKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=92047 # 1vjvA.237.65 read from T0547.t06.many.frag # found chain 1vjvA in training set T0547 237 :QITEIHPLK 1vjvA 150 :GAQDEEIHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92048 # 1m22A.237.343 read from T0547.t06.many.frag # found chain 1m22A in training set T0547 237 :QITEIHPLK 1m22A 381 :PLRSLADLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92049 # 1ew6A.237.112 read from T0547.t06.many.frag # found chain 1ew6A in training set Warning: unaligning (T0547)Q237 (1ew6A)Q113 because P (beta_P) conformation "forbidden" or filtered. T0547 238 :ITEIHPLK 1ew6A 114 :SFDSQSWD Number of specific fragments extracted= 1 number of extra gaps= 1 total=92050 # 1ytlA.237.155 read from T0547.t06.many.frag # found chain 1ytlA in training set T0547 237 :QITEIHPLK 1ytlA 156 :LWKKEEDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92051 # 1ofcX.237.160 read from T0547.t06.many.frag # found chain 1ofcX in template set T0547 237 :QITEIHPLK 1ofcX 848 :ELQDIERIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92052 # 1qzmA.237.46 read from T0547.t06.many.frag # found chain 1qzmA in template set Warning: unaligning (T0547)Q237 because of BadResidue code BAD_PEPTIDE in next template residue (1qzmA)E538 Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1qzmA)E538 T0547 239 :TEIHPLK 1qzmA 539 :AGVRGLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=92053 # 7odcA.238.201 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)T239 (7odcA)T203 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (7odcA)D204 because E (beta_S) conformation "forbidden" or filtered. T0547 238 :I 7odcA 202 :C T0547 241 :IHPLKK 7odcA 205 :PDTFVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=92055 # 1p1xA.238.206 read from T0547.t06.many.frag # found chain 1p1xA in training set T0547 238 :ITEIHPLKK 1p1xA 206 :VRTAEDAQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92056 # 1qzmA.238.47 read from T0547.t06.many.frag # found chain 1qzmA in template set Warning: unaligning (T0547)I238 because of BadResidue code BAD_PEPTIDE at template residue (1qzmA)E538 Warning: unaligning (T0547)E240 (1qzmA)G540 because P (beta_P) conformation "forbidden" or filtered. T0547 239 :T 1qzmA 539 :A T0547 241 :IHPLKK 1qzmA 541 :VRGLER Number of specific fragments extracted= 2 number of extra gaps= 2 total=92058 # 1v33A.238.72 read from T0547.t06.many.frag # found chain 1v33A in training set T0547 238 :ITEIHPLKK 1v33A 53 :YTDIRDLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=92059 # 1wcwA.238.201 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 238 :ITEIHPLKK 1wcwA 202 :AKDPKALRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92060 # 1ie9A.238.177 read from T0547.t06.many.frag # found chain 1ie9A in training set T0547 238 :ITEIHPLKK 1ie9A 346 :VQDAALIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92061 # 1cliA.238.112 read from T0547.t06.many.frag # found chain 1cliA in template set T0547 238 :ITEIHPLKK 1cliA 113 :KLDVDTASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92062 # 1m22A.238.344 read from T0547.t06.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)E240 (1m22A)S384 because Y (epsilon') conformation "forbidden" or filtered. T0547 238 :IT 1m22A 382 :LR T0547 241 :IHPLKK 1m22A 385 :LADLIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=92064 # 1lucA.238.194 read from T0547.t06.many.frag # found chain 1lucA in training set Warning: unaligning (T0547)E240 (1lucA)N197 because P (beta_P) conformation "forbidden" or filtered. T0547 238 :IT 1lucA 195 :II T0547 241 :IHPLKK 1lucA 198 :THEKKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=92066 # 1j2rA.238.168 read from T0547.t06.many.frag # found chain 1j2rA in training set T0547 238 :ITEIHPLKK 1j2rA 169 :AASAEQHNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92067 # 1efyA.238.90 read from T0547.t06.many.frag # found chain 1efyA in template set T0547 238 :ITEIHPLKK 1efyA 752 :LSNLEYIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92068 # 1uf3A.238.73 read from T0547.t06.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 238 :IT 1uf3A 74 :DA T0547 241 :IHPLKK 1uf3A 77 :IWEYLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=92070 # 1kcfA.238.124 read from T0547.t06.many.frag # found chain 1kcfA in template set T0547 238 :ITEIHPLKK 1kcfA 125 :IATIPEWTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92071 # 1t0hB.238.141 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 238 :ITEIHPLKK 1t0hB 343 :ISSPKVLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92072 # 1ytlA.238.156 read from T0547.t06.many.frag # found chain 1ytlA in training set T0547 238 :ITEIHPLKK 1ytlA 157 :WKKEEDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92073 # 1dj7A.238.29 read from T0547.t06.many.frag # found chain 1dj7A in template set T0547 238 :ITEIHPLKK 1dj7A 30 :CSDLSVTAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92074 # 1ezfA.238.131 read from T0547.t06.many.frag # found chain 1ezfA in template set T0547 238 :ITEIHPLKK 1ezfA 162 :VTSEQEWDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92075 # 1s4bP.238.269 read from T0547.t06.many.frag # found chain 1s4bP in template set Warning: unaligning (T0547)T239 (1s4bP)K286 because T (delta_L) conformation "forbidden" or filtered. T0547 238 :I 1s4bP 285 :A T0547 240 :EIHPLKK 1s4bP 287 :TSQTVAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=92077 # 1hf8A.238.157 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 238 :ITEIHPLKK 1hf8A 158 :TMNTEKLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92078 # 1zx4A.238.62 read from T0547.t06.many.frag # found chain 1zx4A in template set T0547 238 :ITEIHPLKK 1zx4A 204 :ELTFSDYKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92079 # 1vgjA.238.93 read from T0547.t06.many.frag # found chain 1vgjA in template set Warning: unaligning (T0547)E240 (1vgjA)N96 because L (left) conformation "forbidden" or filtered. T0547 238 :IT 1vgjA 94 :IE T0547 241 :IHPLKK 1vgjA 97 :DEIIRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=92081 # 1efdN.238.76 read from T0547.t06.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)I238 (1efdN)G107 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E240 (1efdN)S109 because P (beta_P) conformation "forbidden" or filtered. T0547 239 :T 1efdN 108 :P T0547 241 :IHPLKK 1efdN 110 :PEMLAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=92083 # 1w8sA.238.180 read from T0547.t06.many.frag # found chain 1w8sA in template set T0547 238 :ITEIHPLKK 1w8sA 181 :TGDPKTFSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=92084 # 1yb0A.238.94 read from T0547.t06.many.frag # found chain 1yb0A in template set Warning: unaligning (T0547)E240 (1yb0A)G97 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)I241 (1yb0A)G98 because S (epsilon) conformation "forbidden" or filtered. T0547 238 :IT 1yb0A 95 :KS T0547 242 :HPLKK 1yb0A 99 :DRYYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=92086 # 1t1jA.238.18 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 238 :ITEIHPLKK 1t1jA 12 :HADAEVVEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92087 # 1vjrA.238.242 read from T0547.t06.many.frag # found chain 1vjrA in template set T0547 238 :ITEIHPLKK 1vjrA 231 :ETTPEDLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=92088 # 1vjvA.238.66 read from T0547.t06.many.frag # found chain 1vjvA in training set T0547 238 :ITEIHPLKK 1vjvA 151 :AQDEEIHKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92089 # 1kr7A.238.35 read from T0547.t06.many.frag # found chain 1kr7A in training set T0547 238 :ITEIHPLKK 1kr7A 35 :LKGNAAYKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92090 # 2bjfA.238.112 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)E240 (2bjfA)S115 because Y (epsilon') conformation "forbidden" or filtered. T0547 238 :IT 2bjfA 113 :FS T0547 241 :IHPLKK 2bjfA 116 :VEEVKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=92092 # 1dfmA.238.95 read from T0547.t06.many.frag # found chain 1dfmA in training set T0547 238 :ITEIHPLKK 1dfmA 96 :FSNYPFLLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92093 # 7odcA.239.202 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)T239 (7odcA)T203 because G (3-10) conformation "forbidden" or filtered. T0547 240 :EIHPLKKA 7odcA 204 :DPDTFVQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=92094 # 1ie9A.239.178 read from T0547.t06.many.frag # found chain 1ie9A in training set Warning: unaligning (T0547)E240 (1ie9A)D348 because N (gamma') conformation "forbidden" or filtered. T0547 239 :T 1ie9A 347 :Q T0547 241 :IHPLKKA 1ie9A 349 :AALIEAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=92096 # 1p1xA.239.207 read from T0547.t06.many.frag # found chain 1p1xA in training set T0547 239 :TEIHPLKKA 1p1xA 207 :RTAEDAQKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92097 # 1efyA.239.91 read from T0547.t06.many.frag # found chain 1efyA in template set T0547 239 :TEIHPLKKA 1efyA 753 :SNLEYIQAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92098 # 1kr7A.239.36 read from T0547.t06.many.frag # found chain 1kr7A in training set T0547 239 :TEIHPLKKA 1kr7A 36 :KGNAAYKTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92099 # 1lucA.239.195 read from T0547.t06.many.frag # found chain 1lucA in training set T0547 239 :TEIHPLKKA 1lucA 196 :INTHEKKAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92100 # 1yb0A.239.95 read from T0547.t06.many.frag # found chain 1yb0A in template set T0547 239 :TEIHPLKKA 1yb0A 96 :SGGDRYYKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92101 # 1m22A.239.345 read from T0547.t06.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)E240 (1m22A)S384 because Y (epsilon') conformation "forbidden" or filtered. T0547 239 :T 1m22A 383 :R T0547 241 :IHPLKKA 1m22A 385 :LADLIAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=92103 # 1t0hB.239.142 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 239 :TEIHPLKKA 1t0hB 344 :SSPKVLQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92104 # 1vgjA.239.94 read from T0547.t06.many.frag # found chain 1vgjA in template set Warning: unaligning (T0547)E240 (1vgjA)N96 because L (left) conformation "forbidden" or filtered. T0547 239 :T 1vgjA 95 :E T0547 241 :IHPLKKA 1vgjA 97 :DEIIREM Number of specific fragments extracted= 2 number of extra gaps= 1 total=92106 # 1n93X.239.257 read from T0547.t06.many.frag # found chain 1n93X in training set T0547 239 :TEIHPLKKA 1n93X 253 :LTIPVVAYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92107 # 1vjvA.239.67 read from T0547.t06.many.frag # found chain 1vjvA in training set T0547 239 :TEIHPLKKA 1vjvA 152 :QDEEIHKQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92108 # 1r0dA.239.132 read from T0547.t06.many.frag # found chain 1r0dA in template set T0547 239 :TEIHPLKKA 1r0dA 898 :GKYEELIVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=92109 # 1wduA.239.127 read from T0547.t06.many.frag # found chain 1wduA in template set T0547 239 :TEIHPLKKA 1wduA 131 :KPIESYLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92110 # 1qzmA.239.48 read from T0547.t06.many.frag # found chain 1qzmA in template set Warning: unaligning (T0547)I241 (1qzmA)V541 because G (3-10) conformation "forbidden" or filtered. T0547 239 :TE 1qzmA 539 :AG T0547 242 :HPLKKA 1qzmA 542 :RGLERE Number of specific fragments extracted= 2 number of extra gaps= 1 total=92112 # 1t1jA.239.19 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 239 :TEIHPLKKA 1t1jA 13 :ADAEVVEQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92113 # 1ojrA.239.218 read from T0547.t06.many.frag # found chain 1ojrA in training set Warning: unaligning (T0547)E240 (1ojrA)T220 because E (beta_S) conformation "forbidden" or filtered. T0547 239 :T 1ojrA 219 :P T0547 241 :IHPLKKA 1ojrA 221 :LDETFGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=92115 # 1kcfA.239.125 read from T0547.t06.many.frag # found chain 1kcfA in template set T0547 239 :TEIHPLKKA 1kcfA 126 :ATIPEWTLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92116 # 1t6uA.239.8 read from T0547.t06.many.frag # found chain 1t6uA in training set Warning: unaligning (T0547)E240 (1t6uA)D10 because E (beta_S) conformation "forbidden" or filtered. T0547 239 :T 1t6uA 9 :Y T0547 241 :IHPLKKA 1t6uA 11 :PAQARIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=92118 # 1qtwA.239.78 read from T0547.t06.many.frag # found chain 1qtwA in training set T0547 239 :TEIHPLKKA 1qtwA 79 :PVTEALEKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92119 # 1w8sA.239.181 read from T0547.t06.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)T239 (1w8sA)G182 because T (delta_L) conformation "forbidden" or filtered. T0547 240 :EIHPLKKA 1w8sA 183 :DPKTFSWA Number of specific fragments extracted= 1 number of extra gaps= 1 total=92120 # 1ytlA.239.157 read from T0547.t06.many.frag # found chain 1ytlA in training set T0547 239 :TEIHPLKKA 1ytlA 158 :KKEEDYLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92121 # 1zx4A.239.63 read from T0547.t06.many.frag # found chain 1zx4A in template set T0547 239 :TEIHPLKKA 1zx4A 205 :LTFSDYKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92122 # 1onwA.239.172 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 239 :TEIHPLKKA 1onwA 173 :PDVYHLANM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92123 # 1wcwA.239.202 read from T0547.t06.many.frag # found chain 1wcwA in training set T0547 239 :TEIHPLKKA 1wcwA 203 :KDPKALREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92124 # 1dj7A.239.30 read from T0547.t06.many.frag # found chain 1dj7A in template set T0547 239 :TEIHPLKKA 1dj7A 31 :SDLSVTAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92125 # 1azo.239.14 read from T0547.t06.many.frag # found chain 1azo in training set T0547 239 :TEIHPLKKA 1azo 12 :ETEEQLLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92126 # 1ezfA.239.132 read from T0547.t06.many.frag # found chain 1ezfA in template set T0547 239 :TEIHPLKKA 1ezfA 163 :TSEQEWDKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92127 # 1uf3A.239.74 read from T0547.t06.many.frag # found chain 1uf3A in template set Warning: unaligning (T0547)E240 (1uf3A)P76 because C (cis) conformation "forbidden" or filtered. T0547 239 :T 1uf3A 75 :A T0547 241 :IHPLKKA 1uf3A 77 :IWEYLRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=92129 # 256bA.239.20 read from T0547.t06.many.frag # found chain 256bA in training set Warning: unaligning (T0547)E240 (256bA)N22 because Y (epsilon') conformation "forbidden" or filtered. T0547 239 :T 256bA 21 :D T0547 241 :IHPLKKA 256bA 23 :AAQVKDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=92131 # 7odcA.240.203 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 240 :EIHPLKKAL 7odcA 204 :DPDTFVQAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92132 # 1ie9A.240.179 read from T0547.t06.many.frag # found chain 1ie9A in training set T0547 240 :EIHPLKKAL 1ie9A 348 :DAALIEAIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92133 # 1lucA.240.196 read from T0547.t06.many.frag # found chain 1lucA in training set T0547 240 :EIHPLKKAL 1lucA 197 :NTHEKKAQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92134 # 1kr7A.240.37 read from T0547.t06.many.frag # found chain 1kr7A in training set T0547 240 :EIHPLKKAL 1kr7A 37 :GNAAYKTQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92135 # 1vjvA.240.68 read from T0547.t06.many.frag # found chain 1vjvA in training set T0547 240 :EIHPLKKAL 1vjvA 153 :DEEIHKQIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92136 # 1m22A.240.346 read from T0547.t06.many.frag # found chain 1m22A in training set Warning: unaligning (T0547)E240 (1m22A)S384 because Y (epsilon') conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1m22A 385 :LADLIAFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=92137 # 1efyA.240.92 read from T0547.t06.many.frag # found chain 1efyA in template set T0547 240 :EIHPLKKAL 1efyA 754 :NLEYIQAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92138 # 1n93X.240.258 read from T0547.t06.many.frag # found chain 1n93X in training set T0547 240 :EIHPLKKAL 1n93X 254 :TIPVVAYEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92139 # 1onwA.240.173 read from T0547.t06.many.frag # found chain 1onwA in training set Warning: unaligning (T0547)E240 (1onwA)D174 because P (beta_P) conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1onwA 175 :VYHLANMA Number of specific fragments extracted= 1 number of extra gaps= 1 total=92140 # 256bA.240.21 read from T0547.t06.many.frag # found chain 256bA in training set T0547 240 :EIHPLKKAL 256bA 22 :NAAQVKDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92141 # 1yb0A.240.96 read from T0547.t06.many.frag # found chain 1yb0A in template set T0547 240 :EIHPLKKAL 1yb0A 97 :GGDRYYKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92142 # 1r0dA.240.133 read from T0547.t06.many.frag # found chain 1r0dA in template set T0547 240 :EIHPLKKAL 1r0dA 899 :KYEELIVCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92143 # 1r5lA.240.45 read from T0547.t06.many.frag # found chain 1r5lA in training set T0547 240 :EIHPLKKAL 1r5lA 62 :DLDLAWRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92144 # 1t1jA.240.20 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 240 :EIHPLKKAL 1t1jA 14 :DAEVVEQRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92145 # 1k47A.240.248 read from T0547.t06.many.frag # found chain 1k47A in template set T0547 240 :EIHPLKKAL 1k47A 247 :KSEKIIEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92146 1otvA expands to /projects/compbio/data/pdb/1otv.pdb.gz 1otvA:# 1otvA.240.7 read from T0547.t06.many.frag # adding 1otvA to template set # found chain 1otvA in template set T0547 240 :EIHPLKKAL 1otvA 8 :SPQAFEEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92147 # 1hf8A.240.159 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 240 :EIHPLKKAL 1hf8A 160 :NTEKLLKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92148 # 1p1xA.240.208 read from T0547.t06.many.frag # found chain 1p1xA in training set T0547 240 :EIHPLKKAL 1p1xA 208 :TAEDAQKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92149 # 1pmi.240.211 read from T0547.t06.many.frag # found chain 1pmi in training set T0547 240 :EIHPLKKAL 1pmi 213 :DDDVIKQQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92150 # 1azo.240.15 read from T0547.t06.many.frag # found chain 1azo in training set T0547 240 :EIHPLKKAL 1azo 13 :TEEQLLAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92151 # 1dj7A.240.31 read from T0547.t06.many.frag # found chain 1dj7A in template set T0547 240 :EIHPLKKAL 1dj7A 32 :DLSVTAVVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92152 # 1ojrA.240.219 read from T0547.t06.many.frag # found chain 1ojrA in training set T0547 240 :EIHPLKKAL 1ojrA 220 :TLDETFGLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92153 # 1t6uA.240.9 read from T0547.t06.many.frag # found chain 1t6uA in training set T0547 240 :EIHPLKKAL 1t6uA 10 :DPAQARIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92154 # 1t0hB.240.143 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 240 :EIHPLKKAL 1t0hB 345 :SPKVLQRLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92155 # 1qtwA.240.79 read from T0547.t06.many.frag # found chain 1qtwA in training set T0547 240 :EIHPLKKAL 1qtwA 80 :VTEALEKSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92156 # 1w8sA.240.182 read from T0547.t06.many.frag # found chain 1w8sA in template set Warning: unaligning (T0547)E240 (1w8sA)D183 because E (beta_S) conformation "forbidden" or filtered. T0547 241 :IHPLKKAL 1w8sA 184 :PKTFSWAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=92157 # 1vgjA.240.95 read from T0547.t06.many.frag # found chain 1vgjA in template set Warning: unaligning (T0547)E240 (1vgjA)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I241 (1vgjA)D97 because G (3-10) conformation "forbidden" or filtered. T0547 242 :HPLKKAL 1vgjA 98 :EIIREMA Number of specific fragments extracted= 1 number of extra gaps= 1 total=92158 # 1zx4A.240.64 read from T0547.t06.many.frag # found chain 1zx4A in template set T0547 240 :EIHPLKKAL 1zx4A 206 :TFSDYKTLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=92159 # 2yhx.240.18 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)E240 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2yhx)P21 Warning: unaligning (T0547)I241 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2yhx)P21 Warning: unaligning (T0547)H242 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X22 T0547 243 :PLKKAL 2yhx 23 :ILQAVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=92160 # 2f22A.240.2 read from T0547.t06.many.frag # found chain 2f22A in training set T0547 240 :EIHPLKKAL 2f22A 2 :DTNGVLYAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92161 # 1ie9A.241.180 read from T0547.t06.many.frag # found chain 1ie9A in training set T0547 241 :IHPLKKALN 1ie9A 349 :AALIEAIQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92162 # 7odcA.241.204 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 241 :IHPLKKALN 7odcA 205 :PDTFVQAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92163 # 1yb0A.241.97 read from T0547.t06.many.frag # found chain 1yb0A in template set T0547 241 :IHPLKKALN 1yb0A 98 :GDRYYKAEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92164 # 1vjvA.241.69 read from T0547.t06.many.frag # found chain 1vjvA in training set T0547 241 :IHPLKKALN 1vjvA 154 :EEIHKQIVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92165 # 256bA.241.22 read from T0547.t06.many.frag # found chain 256bA in training set T0547 241 :IHPLKKALN 256bA 23 :AAQVKDALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92166 # 1onwA.241.174 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 241 :IHPLKKALN 1onwA 175 :VYHLANMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92167 # 1t1jA.241.21 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 241 :IHPLKKALN 1t1jA 15 :AEVVEQRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92168 # 1hf8A.241.160 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 241 :IHPLKKALN 1hf8A 161 :TEKLLKTVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=92169 # 1kr7A.241.38 read from T0547.t06.many.frag # found chain 1kr7A in training set T0547 241 :IHPLKKALN 1kr7A 38 :NAAYKTQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92170 # 1r5lA.241.46 read from T0547.t06.many.frag # found chain 1r5lA in training set T0547 241 :IHPLKKALN 1r5lA 63 :LDLAWRLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92171 # 1lucA.241.197 read from T0547.t06.many.frag # found chain 1lucA in training set T0547 241 :IHPLKKALN 1lucA 198 :THEKKAQLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92172 # 1k47A.241.249 read from T0547.t06.many.frag # found chain 1k47A in template set T0547 241 :IHPLKKALN 1k47A 248 :SEKIIEQVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92173 # 1n93X.241.259 read from T0547.t06.many.frag # found chain 1n93X in training set T0547 241 :IHPLKKALN 1n93X 255 :IPVVAYEIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92174 # 1r0dA.241.134 read from T0547.t06.many.frag # found chain 1r0dA in template set T0547 241 :IHPLKKALN 1r0dA 900 :YEELIVCSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=92175 # 1ylmA.241.5 read from T0547.t06.many.frag # found chain 1ylmA in template set Warning: unaligning (T0547)K245 because of BadResidue code BAD_PEPTIDE in next template residue (1ylmA)K11 Warning: unaligning (T0547)K246 because of BadResidue code BAD_PEPTIDE at template residue (1ylmA)K11 T0547 241 :IHPL 1ylmA 6 :RSKI T0547 247 :ALN 1ylmA 12 :TLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=92177 # 1o7qA.241.208 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 241 :IHPLKKALN 1o7qA 288 :PTQVLNITQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92178 # 1rtqA.241.38 read from T0547.t06.many.frag # found chain 1rtqA in training set T0547 241 :IHPLKKALN 1rtqA 39 :TTSGAQASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92179 # 1dj7A.241.32 read from T0547.t06.many.frag # found chain 1dj7A in template set T0547 241 :IHPLKKALN 1dj7A 33 :LSVTAVVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92180 # 2axpA.241.104 read from T0547.t06.many.frag # found chain 2axpA in template set T0547 241 :IHPLKKALN 2axpA 105 :PSVIKKRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92181 # 1efyA.241.93 read from T0547.t06.many.frag # found chain 1efyA in template set T0547 241 :IHPLKKALN 1efyA 755 :LEYIQAKVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92182 # 1m22A.241.347 read from T0547.t06.many.frag # found chain 1m22A in training set T0547 241 :IHPLKKALN 1m22A 385 :LADLIAFNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92183 # 1ei6A.241.210 read from T0547.t06.many.frag # found chain 1ei6A in template set T0547 241 :IHPLKKALN 1ei6A 212 :TPEANAFYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92184 # 1pmi.241.212 read from T0547.t06.many.frag # found chain 1pmi in training set T0547 241 :IHPLKKALN 1pmi 214 :DDVIKQQTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92185 # 1f60A.241.161 read from T0547.t06.many.frag # found chain 1f60A in training set T0547 241 :IHPLKKALN 1f60A 162 :ESRFQEIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92186 # 1zkeA.241.53 read from T0547.t06.many.frag # found chain 1zkeA in training set T0547 241 :IHPLKKALN 1zkeA 52 :FTQLSEEVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92187 # 1t6uA.241.10 read from T0547.t06.many.frag # found chain 1t6uA in training set T0547 241 :IHPLKKALN 1t6uA 11 :PAQARIEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92188 # 2f22A.241.3 read from T0547.t06.many.frag # found chain 2f22A in training set T0547 241 :IHPLKKALN 2f22A 3 :TNGVLYAAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92189 # 1qtwA.241.80 read from T0547.t06.many.frag # found chain 1qtwA in training set T0547 241 :IHPLKKALN 1qtwA 81 :TEALEKSRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92190 # 1vgjA.241.96 read from T0547.t06.many.frag # found chain 1vgjA in template set T0547 241 :IHPLKKALN 1vgjA 97 :DEIIREMAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92191 # 1ojrA.241.220 read from T0547.t06.many.frag # found chain 1ojrA in training set T0547 241 :IHPLKKALN 1ojrA 221 :LDETFGLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=92192 # 7odcA.242.205 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 242 :HPLKKALNE 7odcA 206 :DTFVQAVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92193 # 1yb0A.242.98 read from T0547.t06.many.frag # found chain 1yb0A in template set T0547 242 :HPLKKALNE 1yb0A 99 :DRYYKAENN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92194 # 1onwA.242.175 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 242 :HPLKKALNE 1onwA 176 :YHLANMAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92195 # 256bA.242.23 read from T0547.t06.many.frag # found chain 256bA in training set T0547 242 :HPLKKALNE 256bA 24 :AQVKDALTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92196 # 1ie9A.242.181 read from T0547.t06.many.frag # found chain 1ie9A in training set T0547 242 :HPLKKALNE 1ie9A 350 :ALIEAIQDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92197 # 1r5lA.242.47 read from T0547.t06.many.frag # found chain 1r5lA in training set T0547 242 :HPLKKALNE 1r5lA 64 :DLAWRLLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92198 # 1vjvA.242.70 read from T0547.t06.many.frag # found chain 1vjvA in training set T0547 242 :HPLKKALNE 1vjvA 155 :EIHKQIVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92199 # 1rtqA.242.39 read from T0547.t06.many.frag # found chain 1rtqA in training set T0547 242 :HPLKKALNE 1rtqA 40 :TSGAQASDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=92200 # 1o7qA.242.209 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 242 :HPLKKALNE 1o7qA 289 :TQVLNITQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92201 # 1lucA.242.198 read from T0547.t06.many.frag # found chain 1lucA in training set T0547 242 :HPLKKALNE 1lucA 199 :HEKKAQLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92202 # 1hf8A.242.161 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 242 :HPLKKALNE 1hf8A 162 :EKLLKTVPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92203 # 1t1jA.242.22 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 242 :HPLKKALNE 1t1jA 16 :EVVEQRFRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92204 # 1aep.242.131 read from T0547.t06.many.frag # found chain 1aep in template set T0547 242 :HPLKKALNE 1aep 132 :SALQEAAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92205 # 1k47A.242.250 read from T0547.t06.many.frag # found chain 1k47A in template set T0547 242 :HPLKKALNE 1k47A 249 :EKIIEQVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92206 # 1pmi.242.213 read from T0547.t06.many.frag # found chain 1pmi in training set T0547 242 :HPLKKALNE 1pmi 215 :DVIKQQTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92207 # 1f60A.242.162 read from T0547.t06.many.frag # found chain 1f60A in training set T0547 242 :HPLKKALNE 1f60A 163 :SRFQEIVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92208 # 1n93X.242.260 read from T0547.t06.many.frag # found chain 1n93X in training set T0547 242 :HPLKKALNE 1n93X 256 :PVVAYEIRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92209 # 1kr7A.242.39 read from T0547.t06.many.frag # found chain 1kr7A in training set T0547 242 :HPLKKALNE 1kr7A 39 :AAYKTQAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92210 # 1ylmA.242.6 read from T0547.t06.many.frag # found chain 1ylmA in template set Warning: unaligning (T0547)K245 because of BadResidue code BAD_PEPTIDE in next template residue (1ylmA)K11 Warning: unaligning (T0547)K246 because of BadResidue code BAD_PEPTIDE at template residue (1ylmA)K11 T0547 242 :HPL 1ylmA 7 :SKI T0547 247 :ALNE 1ylmA 12 :TLGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=92212 # 1ei6A.242.211 read from T0547.t06.many.frag # found chain 1ei6A in template set T0547 242 :HPLKKALNE 1ei6A 213 :PEANAFYAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92213 # 2axpA.242.105 read from T0547.t06.many.frag # found chain 2axpA in template set T0547 242 :HPLKKALNE 2axpA 106 :SVIKKRLRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92214 # 2f22A.242.4 read from T0547.t06.many.frag # found chain 2f22A in training set T0547 242 :HPLKKALNE 2f22A 4 :NGVLYAANM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92215 # 1f5qB.242.17 read from T0547.t06.many.frag # found chain 1f5qB in template set T0547 242 :HPLKKALNE 1f5qB 18 :EDCRQMIYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92216 # 2yhx.242.20 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)H242 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X22 T0547 243 :PLKKALNE 2yhx 23 :ILQAVVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=92217 # 1r0dA.242.135 read from T0547.t06.many.frag # found chain 1r0dA in template set T0547 242 :HPLKKALNE 1r0dA 901 :EELIVCSHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92218 # 1zkeA.242.54 read from T0547.t06.many.frag # found chain 1zkeA in training set T0547 242 :HPLKKALNE 1zkeA 53 :TQLSEEVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=92219 # 1ug6A.242.355 read from T0547.t06.many.frag # found chain 1ug6A in training set T0547 242 :HPLKKALNE 1ug6A 356 :PERVAYLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92220 1nlfA expands to /projects/compbio/data/pdb/1nlf.pdb.gz 1nlfA:# 1nlfA.242.153 read from T0547.t06.many.frag # adding 1nlfA to template set # found chain 1nlfA in template set T0547 242 :HPLKKALNE 1nlfA 154 :GPMAQVIGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92221 # 1jk0B.242.240 read from T0547.t06.many.frag # found chain 1jk0B in template set T0547 242 :HPLKKALNE 1jk0B 241 :KIIEKIITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92222 # 1dj7A.242.33 read from T0547.t06.many.frag # found chain 1dj7A in template set T0547 242 :HPLKKALNE 1dj7A 34 :SVTAVVIEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92223 # 7odcA.243.206 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 243 :PLKKALNEA 7odcA 207 :TFVQAVSDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92224 # 1onwA.243.176 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 243 :PLKKALNEA 1onwA 177 :HLANMAAES Number of specific fragments extracted= 1 number of extra gaps= 0 total=92225 # 1hf8A.243.162 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 243 :PLKKALNEA 1hf8A 163 :KLLKTVPII Number of specific fragments extracted= 1 number of extra gaps= 0 total=92226 # 1o7qA.243.210 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 243 :PLKKALNEA 1o7qA 290 :QVLNITQEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=92227 # 256bA.243.24 read from T0547.t06.many.frag # found chain 256bA in training set T0547 243 :PLKKALNEA 256bA 25 :QVKDALTKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92228 # 1yb0A.243.99 read from T0547.t06.many.frag # found chain 1yb0A in template set T0547 243 :PLKKALNEA 1yb0A 100 :RYYKAENNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92229 # 1vjvA.243.71 read from T0547.t06.many.frag # found chain 1vjvA in training set T0547 243 :PLKKALNEA 1vjvA 156 :IHKQIVIEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92230 # 1rtqA.243.40 read from T0547.t06.many.frag # found chain 1rtqA in training set T0547 243 :PLKKALNEA 1rtqA 41 :SGAQASDWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92231 # 1t1jA.243.23 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 243 :PLKKALNEA 1t1jA 17 :VVEQRFRAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=92232 # 1k47A.243.251 read from T0547.t06.many.frag # found chain 1k47A in template set T0547 243 :PLKKALNEA 1k47A 250 :KIIEQVEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92233 # 1ie9A.243.182 read from T0547.t06.many.frag # found chain 1ie9A in training set T0547 243 :PLKKALNEA 1ie9A 351 :LIEAIQDRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92234 # 1r5lA.243.48 read from T0547.t06.many.frag # found chain 1r5lA in training set T0547 243 :PLKKALNEA 1r5lA 65 :LAWRLLKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92235 # 1ylmA.243.7 read from T0547.t06.many.frag # found chain 1ylmA in template set Warning: unaligning (T0547)K245 because of BadResidue code BAD_PEPTIDE in next template residue (1ylmA)K11 Warning: unaligning (T0547)K246 because of BadResidue code BAD_PEPTIDE at template residue (1ylmA)K11 T0547 243 :PL 1ylmA 8 :KI T0547 247 :ALNEA 1ylmA 12 :TLGFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=92237 # 2f22A.243.5 read from T0547.t06.many.frag # found chain 2f22A in training set T0547 243 :PLKKALNEA 2f22A 5 :GVLYAANMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92238 # 1epuA.243.193 read from T0547.t06.many.frag # found chain 1epuA in template set T0547 243 :PLKKALNEA 1epuA 194 :ENASFAQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92239 # 1ei6A.243.212 read from T0547.t06.many.frag # found chain 1ei6A in template set T0547 243 :PLKKALNEA 1ei6A 214 :EANAFYAMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92240 # 1kwfA.243.199 read from T0547.t06.many.frag # found chain 1kwfA in training set T0547 243 :PLKKALNEA 1kwfA 232 :RWNQVADKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=92241 # 1lucA.243.199 read from T0547.t06.many.frag # found chain 1lucA in training set T0547 243 :PLKKALNEA 1lucA 200 :EKKAQLDLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92242 # 1f60A.243.163 read from T0547.t06.many.frag # found chain 1f60A in training set T0547 243 :PLKKALNEA 1f60A 164 :RFQEIVKET Number of specific fragments extracted= 1 number of extra gaps= 0 total=92243 # 1kr7A.243.40 read from T0547.t06.many.frag # found chain 1kr7A in training set T0547 243 :PLKKALNEA 1kr7A 40 :AYKTQAGKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92244 # 1r5yA.243.166 read from T0547.t06.many.frag # found chain 1r5yA in training set T0547 243 :PLKKALNEA 1r5yA 167 :RAASSMERS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92245 # 1aep.243.132 read from T0547.t06.many.frag # found chain 1aep in template set T0547 243 :PLKKALNEA 1aep 133 :ALQEAAEKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92246 # 1dj7A.243.34 read from T0547.t06.many.frag # found chain 1dj7A in template set T0547 243 :PLKKALNEA 1dj7A 35 :VTAVVIEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92247 # 1nigA.243.21 read from T0547.t06.many.frag # found chain 1nigA in template set T0547 243 :PLKKALNEA 1nigA 22 :KFRSEIEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92248 # 1pmi.243.214 read from T0547.t06.many.frag # found chain 1pmi in training set T0547 243 :PLKKALNEA 1pmi 216 :VIKQQTAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92249 # 1t6uA.243.12 read from T0547.t06.many.frag # found chain 1t6uA in training set T0547 243 :PLKKALNEA 1t6uA 13 :QARIEAESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92250 # 1n5uA.243.229 read from T0547.t06.many.frag # found chain 1n5uA in template set T0547 243 :PLKKALNEA 1n5uA 230 :EVSKLVTDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92251 # 1fjgT.243.50 read from T0547.t06.many.frag # found chain 1fjgT in template set T0547 243 :PLKKALNEA 1fjgT 51 :EALKIMRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92252 # 1n93X.243.261 read from T0547.t06.many.frag # found chain 1n93X in training set T0547 243 :PLKKALNEA 1n93X 257 :VVAYEIRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92253 # 1nlfA.243.154 read from T0547.t06.many.frag # found chain 1nlfA in template set T0547 243 :PLKKALNEA 1nlfA 155 :PMAQVIGRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92254 # 7odcA.244.207 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 244 :LKKALNEAG 7odcA 208 :FVQAVSDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92255 # 1o7qA.244.211 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 244 :LKKALNEAG 1o7qA 291 :VLNITQECF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92256 # 1onwA.244.177 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 244 :LKKALNEAG 1onwA 178 :LANMAAESR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92257 # 1hf8A.244.163 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 244 :LKKALNEAG 1hf8A 164 :LLKTVPIIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92258 # 256bA.244.25 read from T0547.t06.many.frag # found chain 256bA in training set T0547 244 :LKKALNEAG 256bA 26 :VKDALTKMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92259 # 1yb0A.244.100 read from T0547.t06.many.frag # found chain 1yb0A in template set T0547 244 :LKKALNEAG 1yb0A 101 :YYKAENNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92260 # 1vjvA.244.72 read from T0547.t06.many.frag # found chain 1vjvA in training set T0547 244 :LKKALNEAG 1vjvA 157 :HKQIVIEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92261 # 1ie9A.244.183 read from T0547.t06.many.frag # found chain 1ie9A in training set T0547 244 :LKKALNEAG 1ie9A 352 :IEAIQDRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92262 # 1rtqA.244.41 read from T0547.t06.many.frag # found chain 1rtqA in training set T0547 244 :LKKALNEAG 1rtqA 42 :GAQASDWIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92263 # 1t1jA.244.24 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 244 :LKKALNEAG 1t1jA 18 :VEQRFRACN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92264 # 1epuA.244.194 read from T0547.t06.many.frag # found chain 1epuA in template set T0547 244 :LKKALNEAG 1epuA 195 :NASFAQLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92265 # 1kwfA.244.200 read from T0547.t06.many.frag # found chain 1kwfA in training set T0547 244 :LKKALNEAG 1kwfA 233 :WNQVADKCY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92266 # 1r5lA.244.49 read from T0547.t06.many.frag # found chain 1r5lA in training set T0547 244 :LKKALNEAG 1r5lA 66 :AWRLLKNYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92267 # 2f22A.244.6 read from T0547.t06.many.frag # found chain 2f22A in training set T0547 244 :LKKALNEAG 2f22A 6 :VLYAANMTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92268 # 1f60A.244.164 read from T0547.t06.many.frag # found chain 1f60A in training set T0547 244 :LKKALNEAG 1f60A 165 :FQEIVKETS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92269 # 1ei6A.244.213 read from T0547.t06.many.frag # found chain 1ei6A in template set T0547 244 :LKKALNEAG 1ei6A 215 :ANAFYAMMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92270 # 1lucA.244.200 read from T0547.t06.many.frag # found chain 1lucA in training set T0547 244 :LKKALNEAG 1lucA 201 :KKAQLDLYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92271 # 1t6uA.244.13 read from T0547.t06.many.frag # found chain 1t6uA in training set T0547 244 :LKKALNEAG 1t6uA 14 :ARIEAESVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92272 # 1ylmA.244.8 read from T0547.t06.many.frag # found chain 1ylmA in template set Warning: unaligning (T0547)K245 because of BadResidue code BAD_PEPTIDE in next template residue (1ylmA)K11 Warning: unaligning (T0547)K246 because of BadResidue code BAD_PEPTIDE at template residue (1ylmA)K11 T0547 244 :L 1ylmA 9 :I T0547 247 :ALNEAG 1ylmA 12 :TLGFFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=92274 # 1r5yA.244.167 read from T0547.t06.many.frag # found chain 1r5yA in training set T0547 244 :LKKALNEAG 1r5yA 168 :AASSMERSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92275 # 1aep.244.133 read from T0547.t06.many.frag # found chain 1aep in template set T0547 244 :LKKALNEAG 1aep 134 :LQEAAEKTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92276 # 1nigA.244.22 read from T0547.t06.many.frag # found chain 1nigA in template set T0547 244 :LKKALNEAG 1nigA 23 :FRSEIEAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92277 # 1k47A.244.252 read from T0547.t06.many.frag # found chain 1k47A in template set T0547 244 :LKKALNEAG 1k47A 251 :IIEQVEVAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92278 # 1dj7A.244.35 read from T0547.t06.many.frag # found chain 1dj7A in template set T0547 244 :LKKALNEAG 1dj7A 36 :TAVVIEGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92279 # 1n5uA.244.230 read from T0547.t06.many.frag # found chain 1n5uA in template set T0547 244 :LKKALNEAG 1n5uA 231 :VSKLVTDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92280 # 1pmi.244.215 read from T0547.t06.many.frag # found chain 1pmi in training set T0547 244 :LKKALNEAG 1pmi 217 :IKQQTAKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92281 # 1fjgT.244.51 read from T0547.t06.many.frag # found chain 1fjgT in template set T0547 244 :LKKALNEAG 1fjgT 52 :ALKIMRKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92282 # 1kyqA.244.219 read from T0547.t06.many.frag # found chain 1kyqA in template set T0547 244 :LKKALNEAG 1kyqA 220 :RMDWARRCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92283 # 1r0dA.244.137 read from T0547.t06.many.frag # found chain 1r0dA in template set T0547 244 :LKKALNEAG 1r0dA 903 :LIVCSHEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92284 # 1nlfA.244.155 read from T0547.t06.many.frag # found chain 1nlfA in template set T0547 244 :LKKALNEAG 1nlfA 156 :MAQVIGRME Number of specific fragments extracted= 1 number of extra gaps= 0 total=92285 # 7odcA.245.208 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 245 :KKALNEAGN 7odcA 209 :VQAVSDARC Number of specific fragments extracted= 1 number of extra gaps= 0 total=92286 # 1o7qA.245.212 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 245 :KKALNEAGN 1o7qA 292 :LNITQECFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92287 # 256bA.245.26 read from T0547.t06.many.frag # found chain 256bA in training set T0547 245 :KKALNEAGN 256bA 27 :KDALTKMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92288 # 1hf8A.245.164 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 245 :KKALNEAGN 1hf8A 165 :LKTVPIIQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92289 # 1onwA.245.178 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 245 :KKALNEAGN 1onwA 179 :ANMAAESRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92290 # 1nigA.245.23 read from T0547.t06.many.frag # found chain 1nigA in template set T0547 245 :KKALNEAGN 1nigA 24 :RSEIEAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92291 # 1vjvA.245.73 read from T0547.t06.many.frag # found chain 1vjvA in training set T0547 245 :KKALNEAGN 1vjvA 158 :KQIVIEMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92292 # 1ie9A.245.184 read from T0547.t06.many.frag # found chain 1ie9A in training set T0547 245 :KKALNEAGN 1ie9A 353 :EAIQDRLSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92293 # 2cbiA.245.240 read from T0547.t06.many.frag # found chain 2cbiA in template set T0547 245 :KKALNEAGN 2cbiA 271 :EEDFNHLIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92294 # 1t6uA.245.14 read from T0547.t06.many.frag # found chain 1t6uA in training set T0547 245 :KKALNEAGN 1t6uA 15 :RIEAESVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92295 # 1ei6A.245.214 read from T0547.t06.many.frag # found chain 1ei6A in template set T0547 245 :KKALNEAGN 1ei6A 216 :NAFYAMMDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92296 # 1t1jA.245.25 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 245 :KKALNEAGN 1t1jA 19 :EQRFRACNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92297 # 1rtqA.245.42 read from T0547.t06.many.frag # found chain 1rtqA in training set T0547 245 :KKALNEAGN 1rtqA 43 :AQASDWIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92298 # 1yb0A.245.101 read from T0547.t06.many.frag # found chain 1yb0A in template set T0547 245 :KKALNEAGN 1yb0A 102 :YKAENNAVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92299 # 1kwfA.245.201 read from T0547.t06.many.frag # found chain 1kwfA in training set T0547 245 :KKALNEAGN 1kwfA 234 :NQVADKCYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92300 # 1r5yA.245.168 read from T0547.t06.many.frag # found chain 1r5yA in training set T0547 245 :KKALNEAGN 1r5yA 169 :ASSMERSMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92301 # 2f22A.245.7 read from T0547.t06.many.frag # found chain 2f22A in training set T0547 245 :KKALNEAGN 2f22A 7 :LYAANMTNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92302 # 1k47A.245.253 read from T0547.t06.many.frag # found chain 1k47A in template set T0547 245 :KKALNEAGN 1k47A 252 :IEQVEVASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92303 # 1qlwA.245.262 read from T0547.t06.many.frag # found chain 1qlwA in training set T0547 245 :KKALNEAGN 1qlwA 263 :APRLKACHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92304 # 1fjgT.245.52 read from T0547.t06.many.frag # found chain 1fjgT in template set T0547 245 :KKALNEAGN 1fjgT 53 :LKIMRKAES Number of specific fragments extracted= 1 number of extra gaps= 0 total=92305 # 1kr7A.245.42 read from T0547.t06.many.frag # found chain 1kr7A in training set T0547 245 :KKALNEAGN 1kr7A 42 :KTQAGKTVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92306 # 1dj7A.245.36 read from T0547.t06.many.frag # found chain 1dj7A in template set T0547 245 :KKALNEAGN 1dj7A 37 :AVVIEGLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92307 # 1m5wA.245.168 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 245 :KKALNEAGN 1m5wA 169 :AQELARIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92308 # 1f60A.245.165 read from T0547.t06.many.frag # found chain 1f60A in training set T0547 245 :KKALNEAGN 1f60A 166 :QEIVKETSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92309 # 1r5lA.245.50 read from T0547.t06.many.frag # found chain 1r5lA in training set T0547 245 :KKALNEAGN 1r5lA 67 :WRLLKNYYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92310 # 1aep.245.134 read from T0547.t06.many.frag # found chain 1aep in template set T0547 245 :KKALNEAGN 1aep 135 :QEAAEKTKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92311 # 1epuA.245.195 read from T0547.t06.many.frag # found chain 1epuA in template set T0547 245 :KKALNEAGN 1epuA 196 :ASFAQLVQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92312 # 1rz2A.245.42 read from T0547.t06.many.frag # found chain 1rz2A in training set T0547 245 :KKALNEAGN 1rz2A 43 :RKVMAEAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92313 # 1lucA.245.201 read from T0547.t06.many.frag # found chain 1lucA in training set T0547 245 :KKALNEAGN 1lucA 202 :KAQLDLYNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92314 # 1pmi.245.216 read from T0547.t06.many.frag # found chain 1pmi in training set T0547 245 :KKALNEAGN 1pmi 218 :KQQTAKLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92315 # 1ie9A.246.185 read from T0547.t06.many.frag # found chain 1ie9A in training set T0547 246 :KALNEAGNI 1ie9A 354 :AIQDRLSNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92316 # 1o7qA.246.213 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 246 :KALNEAGNI 1o7qA 293 :NITQECFKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92317 # 7odcA.246.209 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 246 :KALNEAGNI 7odcA 210 :QAVSDARCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92318 # 1m5wA.246.169 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 246 :KALNEAGNI 1m5wA 170 :QELARIAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92319 # 2cbiA.246.241 read from T0547.t06.many.frag # found chain 2cbiA in template set T0547 246 :KALNEAGNI 2cbiA 272 :EDFNHLITK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92320 # 1hf8A.246.165 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 246 :KALNEAGNI 1hf8A 166 :KTVPIIQNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92321 # 1nigA.246.24 read from T0547.t06.many.frag # found chain 1nigA in template set T0547 246 :KALNEAGNI 1nigA 25 :SEIEAAEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92322 # 1ei6A.246.215 read from T0547.t06.many.frag # found chain 1ei6A in template set T0547 246 :KALNEAGNI 1ei6A 217 :AFYAMMDSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92323 # 1t1jA.246.26 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 246 :KALNEAGNI 1t1jA 20 :QRFRACNEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92324 # 256bA.246.27 read from T0547.t06.many.frag # found chain 256bA in training set T0547 246 :KALNEAGNI 256bA 28 :DALTKMRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92325 # 1onwA.246.179 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 246 :KALNEAGNI 1onwA 180 :NMAAESRVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92326 # 1yb0A.246.102 read from T0547.t06.many.frag # found chain 1yb0A in template set T0547 246 :KALNEAGNI 1yb0A 103 :KAENNAVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92327 # 1qlwA.246.263 read from T0547.t06.many.frag # found chain 1qlwA in training set T0547 246 :KALNEAGNI 1qlwA 264 :PRLKACHAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92328 # 1k47A.246.254 read from T0547.t06.many.frag # found chain 1k47A in template set T0547 246 :KALNEAGNI 1k47A 253 :EQVEVASKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92329 # 1t6uA.246.15 read from T0547.t06.many.frag # found chain 1t6uA in training set T0547 246 :KALNEAGNI 1t6uA 16 :IEAESVKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92330 # 1vjvA.246.74 read from T0547.t06.many.frag # found chain 1vjvA in training set T0547 246 :KALNEAGNI 1vjvA 159 :QIVIEMKRC Number of specific fragments extracted= 1 number of extra gaps= 0 total=92331 # 1r5yA.246.169 read from T0547.t06.many.frag # found chain 1r5yA in training set T0547 246 :KALNEAGNI 1r5yA 170 :SSMERSMRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=92332 # 1fjgT.246.53 read from T0547.t06.many.frag # found chain 1fjgT in template set T0547 246 :KALNEAGNI 1fjgT 54 :KIMRKAESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92333 # 1kwfA.246.202 read from T0547.t06.many.frag # found chain 1kwfA in training set T0547 246 :KALNEAGNI 1kwfA 235 :QVADKCYQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92334 # 1rtqA.246.43 read from T0547.t06.many.frag # found chain 1rtqA in training set T0547 246 :KALNEAGNI 1rtqA 44 :QASDWIASE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92335 # 1ylmA.246.10 read from T0547.t06.many.frag # found chain 1ylmA in template set Warning: unaligning (T0547)K246 because of BadResidue code BAD_PEPTIDE at template residue (1ylmA)K11 T0547 247 :ALNEAGNI 1ylmA 12 :TLGFFEHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=92336 # 1dj7A.246.37 read from T0547.t06.many.frag # found chain 1dj7A in template set T0547 246 :KALNEAGNI 1dj7A 38 :VVIEGLARH Number of specific fragments extracted= 1 number of extra gaps= 0 total=92337 # 1epuA.246.196 read from T0547.t06.many.frag # found chain 1epuA in template set T0547 246 :KALNEAGNI 1epuA 197 :SFAQLVQQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92338 # 1kyqA.246.221 read from T0547.t06.many.frag # found chain 1kyqA in template set T0547 246 :KALNEAGNI 1kyqA 222 :DWARRCTDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92339 # 2a40B.246.141 read from T0547.t06.many.frag # found chain 2a40B in training set T0547 246 :KALNEAGNI 2a40B 142 :AEINSLYDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92340 # 2f22A.246.8 read from T0547.t06.many.frag # found chain 2f22A in training set T0547 246 :KALNEAGNI 2f22A 8 :YAANMTNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92341 # 1f60A.246.166 read from T0547.t06.many.frag # found chain 1f60A in training set T0547 246 :KALNEAGNI 1f60A 167 :EIVKETSNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92342 # 1sheA.246.16 read from T0547.t06.many.frag # found chain 1sheA in template set T0547 246 :KALNEAGNI 1sheA 9 :RILGEIEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92343 # 1rz2A.246.43 read from T0547.t06.many.frag # found chain 1rz2A in training set T0547 246 :KALNEAGNI 1rz2A 44 :KVMAEAQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92344 # 1gxyA.246.44 read from T0547.t06.many.frag # found chain 1gxyA in training set T0547 246 :KALNEAGNI 1gxyA 45 :VAWEEAKKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92345 # 1o7qA.247.214 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 247 :ALNEAGNIY 1o7qA 294 :ITQECFKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92346 # 1ie9A.247.186 read from T0547.t06.many.frag # found chain 1ie9A in training set T0547 247 :ALNEAGNIY 1ie9A 355 :IQDRLSNTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92347 # 2cbiA.247.242 read from T0547.t06.many.frag # found chain 2cbiA in template set T0547 247 :ALNEAGNIY 2cbiA 273 :DFNHLITKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92348 # 1m5wA.247.170 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 247 :ALNEAGNIY 1m5wA 171 :ELARIAKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92349 # 7odcA.247.210 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 247 :ALNEAGNIY 7odcA 211 :AVSDARCVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92350 # 1nigA.247.25 read from T0547.t06.many.frag # found chain 1nigA in template set T0547 247 :ALNEAGNIY 1nigA 26 :EIEAAEAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92351 # 1hf8A.247.166 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 247 :ALNEAGNIY 1hf8A 167 :TVPIIQNQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92352 # 1ei6A.247.216 read from T0547.t06.many.frag # found chain 1ei6A in template set T0547 247 :ALNEAGNIY 1ei6A 218 :FYAMMDSYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92353 # 1t1jA.247.27 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 247 :ALNEAGNIY 1t1jA 21 :RFRACNEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92354 # 1onwA.247.180 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 247 :ALNEAGNIY 1onwA 181 :MAAESRVGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92355 # 1yb0A.247.103 read from T0547.t06.many.frag # found chain 1yb0A in template set T0547 247 :ALNEAGNIY 1yb0A 104 :AENNAVDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92356 # 1kwfA.247.203 read from T0547.t06.many.frag # found chain 1kwfA in training set T0547 247 :ALNEAGNIY 1kwfA 236 :VADKCYQIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92357 # 1qlwA.247.264 read from T0547.t06.many.frag # found chain 1qlwA in training set T0547 247 :ALNEAGNIY 1qlwA 265 :RLKACHAFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92358 # 1r5yA.247.170 read from T0547.t06.many.frag # found chain 1r5yA in training set T0547 247 :ALNEAGNIY 1r5yA 171 :SMERSMRWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92359 # 1k47A.247.255 read from T0547.t06.many.frag # found chain 1k47A in template set T0547 247 :ALNEAGNIY 1k47A 254 :QVEVASKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92360 # 1kyqA.247.222 read from T0547.t06.many.frag # found chain 1kyqA in template set T0547 247 :ALNEAGNIY 1kyqA 223 :WARRCTDLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92361 # 1ylmA.247.11 read from T0547.t06.many.frag # found chain 1ylmA in template set T0547 247 :ALNEAGNIY 1ylmA 12 :TLGFFEHQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92362 # 2a40B.247.142 read from T0547.t06.many.frag # found chain 2a40B in training set T0547 247 :ALNEAGNIY 2a40B 143 :EINSLYDVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92363 # 256bA.247.28 read from T0547.t06.many.frag # found chain 256bA in training set T0547 247 :ALNEAGNIY 256bA 29 :ALTKMRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92364 # 1o5hA.247.87 read from T0547.t06.many.frag # found chain 1o5hA in template set T0547 247 :ALNEAGNIY 1o5hA 76 :LAKKDMEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92365 # 1f60A.247.167 read from T0547.t06.many.frag # found chain 1f60A in training set T0547 247 :ALNEAGNIY 1f60A 168 :IVKETSNFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92366 # 1fjgT.247.54 read from T0547.t06.many.frag # found chain 1fjgT in template set T0547 247 :ALNEAGNIY 1fjgT 55 :IMRKAESLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92367 # 1t6uA.247.16 read from T0547.t06.many.frag # found chain 1t6uA in training set T0547 247 :ALNEAGNIY 1t6uA 17 :EAESVKAVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92368 # 1wmwA.247.133 read from T0547.t06.many.frag # found chain 1wmwA in training set T0547 247 :ALNEAGNIY 1wmwA 134 :EFHEVVRRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92369 # 1vjvA.247.75 read from T0547.t06.many.frag # found chain 1vjvA in training set T0547 247 :ALNEAGNIY 1vjvA 160 :IVIEMKRCF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92370 # 1rz2A.247.44 read from T0547.t06.many.frag # found chain 1rz2A in training set T0547 247 :ALNEAGNIY 1rz2A 45 :VMAEAQNIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92371 # 1x91A.247.103 read from T0547.t06.many.frag # found chain 1x91A in training set T0547 247 :ALNEAGNIY 1x91A 100 :KVSAALDGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92372 # 1zgmA.247.112 read from T0547.t06.many.frag # found chain 1zgmA in template set T0547 247 :ALNEAGNIY 1zgmA 101 :IVNDANDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92373 # 2yhx.247.25 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)Y255 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X35 T0547 247 :ALNEAGNI 2yhx 27 :VVSILTTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=92374 # 1dj7A.247.38 read from T0547.t06.many.frag # found chain 1dj7A in template set T0547 247 :ALNEAGNIY 1dj7A 39 :VIEGLARHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92375 # 1ie9A.248.187 read from T0547.t06.many.frag # found chain 1ie9A in training set T0547 248 :LNEAGNIYT 1ie9A 356 :QDRLSNTLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92376 # 1o7qA.248.215 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 248 :LNEAGNIYT 1o7qA 295 :TQECFKGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92377 # 1t1jA.248.28 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 248 :LNEAGNIYT 1t1jA 22 :FRACNEVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92378 # 2cbiA.248.243 read from T0547.t06.many.frag # found chain 2cbiA in template set T0547 248 :LNEAGNIYT 2cbiA 274 :FNHLITKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92379 # 7odcA.248.211 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 248 :LNEAGNIYT 7odcA 212 :VSDARCVFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92380 # 1m5wA.248.171 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 248 :LNEAGNIYT 1m5wA 172 :LARIAKAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92381 # 1nigA.248.26 read from T0547.t06.many.frag # found chain 1nigA in template set T0547 248 :LNEAGNIYT 1nigA 27 :IEAAEAYLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92382 # 1hf8A.248.167 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 248 :LNEAGNIYT 1hf8A 168 :VPIIQNQMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92383 # 1ei6A.248.217 read from T0547.t06.many.frag # found chain 1ei6A in template set T0547 248 :LNEAGNIYT 1ei6A 219 :YAMMDSYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92384 # 1qlwA.248.265 read from T0547.t06.many.frag # found chain 1qlwA in training set T0547 248 :LNEAGNIYT 1qlwA 266 :LKACHAFID Number of specific fragments extracted= 1 number of extra gaps= 0 total=92385 # 1yb0A.248.104 read from T0547.t06.many.frag # found chain 1yb0A in template set T0547 248 :LNEAGNIYT 1yb0A 105 :ENNAVDVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92386 # 1k47A.248.256 read from T0547.t06.many.frag # found chain 1k47A in template set T0547 248 :LNEAGNIYT 1k47A 255 :VEVASKLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92387 # 1zy9A.248.317 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 248 :LNEAGNIYT 1zy9A 306 :LNWLFDLFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92388 # 1r5yA.248.171 read from T0547.t06.many.frag # found chain 1r5yA in training set T0547 248 :LNEAGNIYT 1r5yA 172 :MERSMRWAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92389 # 1kwfA.248.204 read from T0547.t06.many.frag # found chain 1kwfA in training set T0547 248 :LNEAGNIYT 1kwfA 237 :ADKCYQIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92390 # 1u8xX.248.147 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 248 :LNEAGNIYT 1u8xX 125 :IGGVLEILD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92391 # 2etsA.248.23 read from T0547.t06.many.frag # found chain 2etsA in template set T0547 248 :LNEAGNIYT 2etsA 12 :VNNMQQNFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92392 # 1onwA.248.181 read from T0547.t06.many.frag # found chain 1onwA in training set T0547 248 :LNEAGNIYT 1onwA 182 :AAESRVGGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92393 # 1kyqA.248.223 read from T0547.t06.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)T256 (1kyqA)G232 because S (epsilon) conformation "forbidden" or filtered. T0547 248 :LNEAGNIY 1kyqA 224 :ARRCTDLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=92394 # 2a40B.248.143 read from T0547.t06.many.frag # found chain 2a40B in training set T0547 248 :LNEAGNIYT 2a40B 144 :INSLYDVYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92395 # 1o5hA.248.88 read from T0547.t06.many.frag # found chain 1o5hA in template set T0547 248 :LNEAGNIYT 1o5hA 77 :AKKDMEAFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92396 # 1ylmA.248.12 read from T0547.t06.many.frag # found chain 1ylmA in template set T0547 248 :LNEAGNIYT 1ylmA 13 :LGFFEHQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92397 # 1fjgT.248.55 read from T0547.t06.many.frag # found chain 1fjgT in template set T0547 248 :LNEAGNIYT 1fjgT 56 :MRKAESLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=92398 # 1f60A.248.168 read from T0547.t06.many.frag # found chain 1f60A in training set T0547 248 :LNEAGNIYT 1f60A 169 :VKETSNFIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92399 # 256bA.248.29 read from T0547.t06.many.frag # found chain 256bA in training set T0547 248 :LNEAGNIYT 256bA 30 :LTKMRAAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92400 # 1t6uA.248.17 read from T0547.t06.many.frag # found chain 1t6uA in training set T0547 248 :LNEAGNIYT 1t6uA 18 :AESVKAVQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92401 # 1vjvA.248.76 read from T0547.t06.many.frag # found chain 1vjvA in training set T0547 248 :LNEAGNIYT 1vjvA 161 :VIEMKRCFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92402 # 1rz2A.248.45 read from T0547.t06.many.frag # found chain 1rz2A in training set T0547 248 :LNEAGNIYT 1rz2A 46 :MAEAQNIYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92403 # 1kr7A.248.45 read from T0547.t06.many.frag # found chain 1kr7A in training set T0547 248 :LNEAGNIYT 1kr7A 45 :AGKTVDYIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92404 # 1ay7B.248.66 read from T0547.t06.many.frag # found chain 1ay7B in training set Warning: unaligning (T0547)A251 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1ay7B)L71 Warning: unaligning (T0547)G252 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ay7B)L71 T0547 248 :LNE 1ay7B 67 :AES T0547 253 :NIYT 1ay7B 72 :QVFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=92406 # 1m5wA.249.172 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 249 :NEAGNIYTE 1m5wA 173 :ARIAKAATF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92407 # 7odcA.249.212 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 249 :NEAGNIYTE 7odcA 213 :SDARCVFDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92408 # 1t1jA.249.29 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 249 :NEAGNIYTE 1t1jA 23 :RACNEVAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92409 # 2cbiA.249.244 read from T0547.t06.many.frag # found chain 2cbiA in template set T0547 249 :NEAGNIYTE 2cbiA 275 :NHLITKAES Number of specific fragments extracted= 1 number of extra gaps= 0 total=92410 # 1hf8A.249.168 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 249 :NEAGNIYTE 1hf8A 169 :PIIQNQMDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92411 # 1nigA.249.27 read from T0547.t06.many.frag # found chain 1nigA in template set T0547 249 :NEAGNIYTE 1nigA 28 :EAAEAYLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92412 # 1qlwA.249.266 read from T0547.t06.many.frag # found chain 1qlwA in training set T0547 249 :NEAGNIYTE 1qlwA 267 :KACHAFIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92413 # 1ie9A.249.188 read from T0547.t06.many.frag # found chain 1ie9A in training set T0547 249 :NEAGNIYTE 1ie9A 357 :DRLSNTLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92414 # 1o7qA.249.216 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 249 :NEAGNIYTE 1o7qA 296 :QECFKGILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92415 # 1zy9A.249.318 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 249 :NEAGNIYTE 1zy9A 307 :NWLFDLFSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92416 # 1u8xX.249.148 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 249 :NEAGNIYTE 1u8xX 126 :GGVLEILDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92417 # 2a40B.249.144 read from T0547.t06.many.frag # found chain 2a40B in training set T0547 249 :NEAGNIYTE 2a40B 145 :NSLYDVYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92418 # 1ei6A.249.218 read from T0547.t06.many.frag # found chain 1ei6A in template set T0547 249 :NEAGNIYTE 1ei6A 220 :AMMDSYFKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92419 # 1ymtA.249.133 read from T0547.t06.many.frag # found chain 1ymtA in training set T0547 249 :NEAGNIYTE 1ymtA 350 :LRAQELVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92420 # 1ga6A.249.147 read from T0547.t06.many.frag # found chain 1ga6A in training set T0547 249 :NEAGNIYTE 1ga6A 148 :QAEDRIFAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92421 # 1kwfA.249.205 read from T0547.t06.many.frag # found chain 1kwfA in training set T0547 249 :NEAGNIYTE 1kwfA 238 :DKCYQIVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92422 # 1o5hA.249.89 read from T0547.t06.many.frag # found chain 1o5hA in template set T0547 249 :NEAGNIYTE 1o5hA 78 :KKDMEAFEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92423 # 1zgmA.249.114 read from T0547.t06.many.frag # found chain 1zgmA in template set T0547 249 :NEAGNIYTE 1zgmA 103 :NDANDVLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92424 # 1yb0A.249.105 read from T0547.t06.many.frag # found chain 1yb0A in template set T0547 249 :NEAGNIYTE 1yb0A 106 :NNAVDVVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92425 # 1aisB.249.126 read from T0547.t06.many.frag # found chain 1aisB in template set T0547 249 :NEAGNIYTE 1aisB 1227 :RRAIEILDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92426 # 1ay7B.249.67 read from T0547.t06.many.frag # found chain 1ay7B in training set Warning: unaligning (T0547)A251 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1ay7B)L71 Warning: unaligning (T0547)G252 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ay7B)L71 T0547 249 :NE 1ay7B 68 :ES T0547 253 :NIYTE 1ay7B 72 :QVFRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=92428 # 1qxyA.249.16 read from T0547.t06.many.frag # found chain 1qxyA in training set T0547 249 :NEAGNIYTE 1qxyA 17 :YICAKVRNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92429 # 1r5yA.249.172 read from T0547.t06.many.frag # found chain 1r5yA in training set T0547 249 :NEAGNIYTE 1r5yA 173 :ERSMRWAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92430 # 1g73A.249.106 read from T0547.t06.many.frag # found chain 1g73A in template set T0547 249 :NEAGNIYTE 1g73A 107 :GLSEMAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92431 # 2etsA.249.24 read from T0547.t06.many.frag # found chain 2etsA in template set T0547 249 :NEAGNIYTE 2etsA 13 :NNMQQNFEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92432 # 1kyqA.249.224 read from T0547.t06.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)T256 (1kyqA)G232 because S (epsilon) conformation "forbidden" or filtered. T0547 249 :NEAGNIY 1kyqA 225 :RRCTDLF T0547 257 :E 1kyqA 233 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=92434 # 2evrA.249.109 read from T0547.t06.many.frag # found chain 2evrA in template set T0547 249 :NEAGNIYTE 2evrA 98 :AEVIAFTQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92435 # 1qv9A.249.207 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 249 :NEAGNIYTE 1qv9A 208 :EIAENVADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92436 # 1yw0A.249.66 read from T0547.t06.many.frag # found chain 1yw0A in template set T0547 249 :NEAGNIYTE 1yw0A 89 :ARSKQVLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92437 # 1ylmA.249.13 read from T0547.t06.many.frag # found chain 1ylmA in template set T0547 249 :NEAGNIYTE 1ylmA 14 :GFFEHQLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92438 # 1qlwA.250.267 read from T0547.t06.many.frag # found chain 1qlwA in training set T0547 250 :EAGNIYTEL 1qlwA 268 :ACHAFIDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92439 # 1t1jA.250.30 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 250 :EAGNIYTEL 1t1jA 24 :ACNEVAATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92440 # 2cbiA.250.245 read from T0547.t06.many.frag # found chain 2cbiA in template set T0547 250 :EAGNIYTEL 2cbiA 276 :HLITKAESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92441 # 7odcA.250.213 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 250 :EAGNIYTEL 7odcA 214 :DARCVFDMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92442 # 1m5wA.250.173 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 250 :EAGNIYTEL 1m5wA 174 :RIAKAATFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92443 # 1nigA.250.28 read from T0547.t06.many.frag # found chain 1nigA in template set T0547 250 :EAGNIYTEL 1nigA 29 :AAEAYLGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92444 # 1o7qA.250.217 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 250 :EAGNIYTEL 1o7qA 297 :ECFKGILKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92445 # 1hf8A.250.169 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 250 :EAGNIYTEL 1hf8A 170 :IIQNQMDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92446 # 1u8xX.250.149 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 250 :EAGNIYTEL 1u8xX 127 :GVLEILDYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92447 # 1ei6A.250.219 read from T0547.t06.many.frag # found chain 1ei6A in template set T0547 250 :EAGNIYTEL 1ei6A 221 :MMDSYFKRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92448 # 1zy9A.250.319 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 250 :EAGNIYTEL 1zy9A 308 :WLFDLFSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92449 # 1ie9A.250.189 read from T0547.t06.many.frag # found chain 1ie9A in training set T0547 250 :EAGNIYTEL 1ie9A 358 :RLSNTLQTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92450 # 1ga6A.250.148 read from T0547.t06.many.frag # found chain 1ga6A in training set T0547 250 :EAGNIYTEL 1ga6A 149 :AEDRIFATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92451 # 1kwfA.250.206 read from T0547.t06.many.frag # found chain 1kwfA in training set T0547 250 :EAGNIYTEL 1kwfA 239 :KCYQIVEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92452 # 1o5hA.250.90 read from T0547.t06.many.frag # found chain 1o5hA in template set T0547 250 :EAGNIYTEL 1o5hA 79 :KDMEAFEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92453 # 1aisB.250.127 read from T0547.t06.many.frag # found chain 1aisB in template set T0547 250 :EAGNIYTEL 1aisB 1228 :RAIEILDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92454 # 1tv8A.250.146 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 250 :EAGNIYTEL 1tv8A 147 :TILEQIDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92455 # 2a40B.250.145 read from T0547.t06.many.frag # found chain 2a40B in training set T0547 250 :EAGNIYTEL 2a40B 146 :SLYDVYLDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92456 # 1ay7B.250.68 read from T0547.t06.many.frag # found chain 1ay7B in training set Warning: unaligning (T0547)A251 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1ay7B)L71 Warning: unaligning (T0547)G252 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ay7B)L71 T0547 250 :E 1ay7B 69 :S T0547 253 :NIYTEL 1ay7B 72 :QVFREA Number of specific fragments extracted= 2 number of extra gaps= 1 total=92458 # 1k47A.250.258 read from T0547.t06.many.frag # found chain 1k47A in template set T0547 250 :EAGNIYTEL 1k47A 257 :VASKLLEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92459 # 1hs6A.250.236 read from T0547.t06.many.frag # found chain 1hs6A in template set T0547 250 :EAGNIYTEL 1hs6A 236 :ETESMLKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92460 # 1ymtA.250.134 read from T0547.t06.many.frag # found chain 1ymtA in training set T0547 250 :EAGNIYTEL 1ymtA 351 :RAQELVLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92461 # 1yb0A.250.106 read from T0547.t06.many.frag # found chain 1yb0A in template set T0547 250 :EAGNIYTEL 1yb0A 107 :NAVDVVRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92462 # 1r5yA.250.173 read from T0547.t06.many.frag # found chain 1r5yA in training set T0547 250 :EAGNIYTEL 1r5yA 174 :RSMRWAKRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92463 # 1zgmA.250.115 read from T0547.t06.many.frag # found chain 1zgmA in template set T0547 250 :EAGNIYTEL 1zgmA 104 :DANDVLDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92464 # 1vjxA.250.113 read from T0547.t06.many.frag # found chain 1vjxA in template set T0547 250 :EAGNIYTEL 1vjxA 102 :DSIILYYEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92465 # 1g73A.250.107 read from T0547.t06.many.frag # found chain 1g73A in template set T0547 250 :EAGNIYTEL 1g73A 108 :LSEMAAEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92466 # 1kyqA.250.225 read from T0547.t06.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)T256 (1kyqA)G232 because S (epsilon) conformation "forbidden" or filtered. T0547 250 :EAGNIY 1kyqA 226 :RCTDLF T0547 257 :EL 1kyqA 233 :IQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=92468 # 1kr7A.250.47 read from T0547.t06.many.frag # found chain 1kr7A in training set T0547 250 :EAGNIYTEL 1kr7A 47 :KTVDYINAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92469 # 1epuA.250.200 read from T0547.t06.many.frag # found chain 1epuA in template set T0547 250 :EAGNIYTEL 1epuA 201 :LVQQKLDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92470 # 1t1jA.251.31 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 251 :AGNIYTELR 1t1jA 25 :CNEVAATIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92471 # 1qlwA.251.268 read from T0547.t06.many.frag # found chain 1qlwA in training set T0547 251 :AGNIYTELR 1qlwA 269 :CHAFIDALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92472 # 2cbiA.251.246 read from T0547.t06.many.frag # found chain 2cbiA in template set T0547 251 :AGNIYTELR 2cbiA 277 :LITKAESLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92473 # 7odcA.251.214 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 251 :AGNIYTELR 7odcA 215 :ARCVFDMAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92474 # 1nigA.251.29 read from T0547.t06.many.frag # found chain 1nigA in template set T0547 251 :AGNIYTELR 1nigA 30 :AEAYLGLAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92475 # 1m5wA.251.174 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 251 :AGNIYTELR 1m5wA 175 :IAKAATFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92476 # 1hf8A.251.170 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 251 :AGNIYTELR 1hf8A 171 :IQNQMDALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92477 # 1ei6A.251.220 read from T0547.t06.many.frag # found chain 1ei6A in template set T0547 251 :AGNIYTELR 1ei6A 222 :MDSYFKRYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=92478 # 1u8xX.251.150 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 251 :AGNIYTELR 1u8xX 128 :VLEILDYME Number of specific fragments extracted= 1 number of extra gaps= 0 total=92479 # 1zy9A.251.320 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 251 :AGNIYTELR 1zy9A 309 :LFDLFSSLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92480 # 1o7qA.251.218 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 251 :AGNIYTELR 1o7qA 298 :CFKGILKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92481 # 1aisB.251.128 read from T0547.t06.many.frag # found chain 1aisB in template set T0547 251 :AGNIYTELR 1aisB 1229 :AIEILDEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92482 # 1ie9A.251.190 read from T0547.t06.many.frag # found chain 1ie9A in training set T0547 251 :AGNIYTELR 1ie9A 359 :LSNTLQTYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92483 # 1tv8A.251.147 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 251 :AGNIYTELR 1tv8A 148 :ILEQIDYAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92484 # 1kwfA.251.207 read from T0547.t06.many.frag # found chain 1kwfA in training set T0547 251 :AGNIYTELR 1kwfA 240 :CYQIVEEVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92485 # 1ua4A.251.248 read from T0547.t06.many.frag # found chain 1ua4A in template set T0547 251 :AGNIYTELR 1ua4A 249 :VKSNLEVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92486 # 1ga6A.251.149 read from T0547.t06.many.frag # found chain 1ga6A in training set T0547 251 :AGNIYTELR 1ga6A 150 :EDRIFATAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92487 # 2a40B.251.146 read from T0547.t06.many.frag # found chain 2a40B in training set T0547 251 :AGNIYTELR 2a40B 147 :LYDVYLDVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92488 # 1hs6A.251.237 read from T0547.t06.many.frag # found chain 1hs6A in template set T0547 251 :AGNIYTELR 1hs6A 237 :TESMLKIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92489 # 1ay7B.251.69 read from T0547.t06.many.frag # found chain 1ay7B in training set Warning: unaligning (T0547)A251 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1ay7B)L71 Warning: unaligning (T0547)G252 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ay7B)L71 T0547 253 :NIYTELR 1ay7B 72 :QVFREAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=92490 # 1ymtA.251.135 read from T0547.t06.many.frag # found chain 1ymtA in training set T0547 251 :AGNIYTELR 1ymtA 352 :AQELVLQLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=92491 # 1vefA.251.293 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 251 :AGNIYTELR 1vefA 294 :GVAAIRYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92492 # 1r0mA.251.278 read from T0547.t06.many.frag # found chain 1r0mA in training set T0547 251 :AGNIYTELR 1r0mA 279 :SRRVHDVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92493 # 1wkqA.251.17 read from T0547.t06.many.frag # found chain 1wkqA in training set T0547 251 :AGNIYTELR 1wkqA 10 :AVTLACEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92494 # 1yb0A.251.107 read from T0547.t06.many.frag # found chain 1yb0A in template set T0547 251 :AGNIYTELR 1yb0A 108 :AVDVVRQLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92495 # 1g73A.251.108 read from T0547.t06.many.frag # found chain 1g73A in template set T0547 251 :AGNIYTELR 1g73A 109 :SEMAAEAAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92496 # 1w8sA.251.212 read from T0547.t06.many.frag # found chain 1w8sA in template set T0547 251 :AGNIYTELR 1w8sA 213 :FLKQVEGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92497 # 1r5yA.251.174 read from T0547.t06.many.frag # found chain 1r5yA in training set T0547 251 :AGNIYTELR 1r5yA 175 :SMRWAKRSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92498 # 1onrA.251.204 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 251 :AGNIYTELR 1onrA 206 :VSEIYQYYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92499 # 1ezwA.251.306 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 251 :AGNIYTELR 1ezwA 307 :VVDKIEELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92500 # 7odcA.252.215 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 252 :GNIYTELRK 7odcA 216 :RCVFDMATE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92501 # 1nigA.252.30 read from T0547.t06.many.frag # found chain 1nigA in template set T0547 252 :GNIYTELRK 1nigA 31 :EAYLGLAIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92502 # 1qlwA.252.269 read from T0547.t06.many.frag # found chain 1qlwA in training set T0547 252 :GNIYTELRK 1qlwA 270 :HAFIDALNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92503 # 1zy9A.252.321 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 252 :GNIYTELRK 1zy9A 310 :FDLFSSLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92504 # 2cbiA.252.247 read from T0547.t06.many.frag # found chain 2cbiA in template set T0547 252 :GNIYTELRK 2cbiA 278 :ITKAESLYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92505 # 1t1jA.252.32 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 252 :GNIYTELRK 1t1jA 26 :NEVAATIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92506 # 1m5wA.252.175 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 252 :GNIYTELRK 1m5wA 176 :AKAATFAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92507 # 1ei6A.252.221 read from T0547.t06.many.frag # found chain 1ei6A in template set T0547 252 :GNIYTELRK 1ei6A 223 :DSYFKRYHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92508 # 1o7qA.252.219 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 252 :GNIYTELRK 1o7qA 299 :FKGILKDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92509 # 1tv8A.252.148 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 252 :GNIYTELRK 1tv8A 149 :LEQIDYATS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92510 # 1aisB.252.129 read from T0547.t06.many.frag # found chain 1aisB in template set T0547 252 :GNIYTELRK 1aisB 1230 :IEILDEAYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92511 # 1ga6A.252.150 read from T0547.t06.many.frag # found chain 1ga6A in training set T0547 252 :GNIYTELRK 1ga6A 151 :DRIFATAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92512 # 1ymtA.252.136 read from T0547.t06.many.frag # found chain 1ymtA in training set T0547 252 :GNIYTELRK 1ymtA 353 :QELVLQLHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92513 # 1wkqA.252.18 read from T0547.t06.many.frag # found chain 1wkqA in training set T0547 252 :GNIYTELRK 1wkqA 11 :VTLACEGVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92514 # 1ezwA.252.307 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 252 :GNIYTELRK 1ezwA 308 :VDKIEELLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92515 # 1w8sA.252.213 read from T0547.t06.many.frag # found chain 1w8sA in template set T0547 252 :GNIYTELRK 1w8sA 214 :LKQVEGVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92516 # 1ay7B.252.70 read from T0547.t06.many.frag # found chain 1ay7B in training set Warning: unaligning (T0547)G252 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ay7B)L71 T0547 253 :NIYTELRK 1ay7B 72 :QVFREAKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=92517 # 1kwfA.252.208 read from T0547.t06.many.frag # found chain 1kwfA in training set T0547 252 :GNIYTELRK 1kwfA 241 :YQIVEEVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92518 # 1nekA.252.92 read from T0547.t06.many.frag # found chain 1nekA in template set T0547 252 :GNIYTELRK 1nekA 93 :PEAILELEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=92519 # 1hf8A.252.171 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 252 :GNIYTELRK 1hf8A 172 :QNQMDALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92520 # 1vefA.252.294 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 252 :GNIYTELRK 1vefA 295 :VAAIRYLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=92521 # 1sheA.252.22 read from T0547.t06.many.frag # found chain 1sheA in template set T0547 252 :GNIYTELRK 1sheA 15 :EEKMNELKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92522 # 1g73A.252.109 read from T0547.t06.many.frag # found chain 1g73A in template set T0547 252 :GNIYTELRK 1g73A 110 :EMAAEAAYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92523 # 2a40B.252.147 read from T0547.t06.many.frag # found chain 2a40B in training set T0547 252 :GNIYTELRK 2a40B 148 :YDVYLDVQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92524 # 1yb0A.252.108 read from T0547.t06.many.frag # found chain 1yb0A in template set T0547 252 :GNIYTELRK 1yb0A 109 :VDVVRQLMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92525 # 1onrA.252.205 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 252 :GNIYTELRK 1onrA 207 :SEIYQYYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92526 # 1e4cP.252.10 read from T0547.t06.many.frag # found chain 1e4cP in training set T0547 252 :GNIYTELRK 1e4cP 11 :IDTCLEMTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92527 # 1r5yA.252.175 read from T0547.t06.many.frag # found chain 1r5yA in training set T0547 252 :GNIYTELRK 1r5yA 176 :MRWAKRSRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92528 # 1xd7A.252.40 read from T0547.t06.many.frag # found chain 1xd7A in template set T0547 252 :GNIYTELRK 1xd7A 41 :RRMISLLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92529 # 2evrA.252.112 read from T0547.t06.many.frag # found chain 2evrA in template set T0547 252 :GNIYTELRK 2evrA 101 :IAFTQKAMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92530 # 1qlwA.253.270 read from T0547.t06.many.frag # found chain 1qlwA in training set T0547 253 :NIYTELRKM 1qlwA 271 :AFIDALNAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92531 # 7odcA.253.216 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 253 :NIYTELRKM 7odcA 217 :CVFDMATEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92532 # 1zy9A.253.322 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 253 :NIYTELRKM 1zy9A 311 :DLFSSLRKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92533 # 1t1jA.253.33 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 253 :NIYTELRKM 1t1jA 27 :EVAATIVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92534 # 1nigA.253.31 read from T0547.t06.many.frag # found chain 1nigA in template set T0547 253 :NIYTELRKM 1nigA 32 :AYLGLAISE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92535 # 1m5wA.253.176 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 253 :NIYTELRKM 1m5wA 177 :KAATFAASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92536 # 2cbiA.253.248 read from T0547.t06.many.frag # found chain 2cbiA in template set T0547 253 :NIYTELRKM 2cbiA 279 :TKAESLYDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92537 # 1ei6A.253.222 read from T0547.t06.many.frag # found chain 1ei6A in template set T0547 253 :NIYTELRKM 1ei6A 224 :SYFKRYHEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92538 # 1sheA.253.23 read from T0547.t06.many.frag # found chain 1sheA in template set T0547 253 :NIYTELRKM 1sheA 16 :EKMNELKMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92539 # 1tv8A.253.149 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 253 :NIYTELRKM 1tv8A 150 :EQIDYATSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92540 # 1aisB.253.130 read from T0547.t06.many.frag # found chain 1aisB in template set T0547 253 :NIYTELRKM 1aisB 1231 :EILDEAYKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92541 # 1wkqA.253.19 read from T0547.t06.many.frag # found chain 1wkqA in training set T0547 253 :NIYTELRKM 1wkqA 12 :TLACEGVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92542 # 1vefA.253.295 read from T0547.t06.many.frag # found chain 1vefA in training set T0547 253 :NIYTELRKM 1vefA 296 :AAIRYLERT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92543 # 1ymtA.253.137 read from T0547.t06.many.frag # found chain 1ymtA in training set T0547 253 :NIYTELRKM 1ymtA 354 :ELVLQLHAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92544 # 1ezwA.253.308 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 253 :NIYTELRKM 1ezwA 309 :DKIEELLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92545 # 1ua4A.253.250 read from T0547.t06.many.frag # found chain 1ua4A in template set T0547 253 :NIYTELRKM 1ua4A 251 :SNLEVLNER Number of specific fragments extracted= 1 number of extra gaps= 0 total=92546 # 1ay7B.253.71 read from T0547.t06.many.frag # found chain 1ay7B in training set T0547 253 :NIYTELRKM 1ay7B 72 :QVFREAKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92547 # 1ga6A.253.151 read from T0547.t06.many.frag # found chain 1ga6A in training set T0547 253 :NIYTELRKM 1ga6A 152 :RIFATAAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92548 # 1o7qA.253.220 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 253 :NIYTELRKM 1o7qA 300 :KGILKDKKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92549 # 1xd7A.253.41 read from T0547.t06.many.frag # found chain 1xd7A in template set T0547 253 :NIYTELRKM 1xd7A 42 :RMISLLKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92550 # 1w8sA.253.214 read from T0547.t06.many.frag # found chain 1w8sA in template set T0547 253 :NIYTELRKM 1w8sA 215 :KQVEGVLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92551 # 1onrA.253.206 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 253 :NIYTELRKM 1onrA 208 :EIYQYYKEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=92552 # 1r0mA.253.280 read from T0547.t06.many.frag # found chain 1r0mA in training set T0547 253 :NIYTELRKM 1r0mA 281 :RVHDVAQSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92553 # 1hd2A.253.56 read from T0547.t06.many.frag # found chain 1hd2A in training set T0547 253 :NIYTELRKM 1hd2A 57 :EQAEALKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92554 # 1nekA.253.93 read from T0547.t06.many.frag # found chain 1nekA in template set T0547 253 :NIYTELRKM 1nekA 94 :EAILELEHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92555 # 1kwfA.253.209 read from T0547.t06.many.frag # found chain 1kwfA in training set T0547 253 :NIYTELRKM 1kwfA 242 :QIVEEVKKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92556 # 1d3yA.253.15 read from T0547.t06.many.frag # found chain 1d3yA in template set T0547 253 :NIYTELRKM 1d3yA 84 :EFAKQLLET Number of specific fragments extracted= 1 number of extra gaps= 0 total=92557 # 1wu7A.253.243 read from T0547.t06.many.frag # found chain 1wu7A in template set T0547 253 :NIYTELRKM 1wu7A 244 :AVEDLLASY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92558 # 1hf8A.253.172 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 253 :NIYTELRKM 1hf8A 173 :NQMDALLDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92559 # 1g73A.253.110 read from T0547.t06.many.frag # found chain 1g73A in template set T0547 253 :NIYTELRKM 1g73A 111 :MAAEAAYQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92560 # 1zy9A.254.323 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 254 :IYTELRKMG 1zy9A 312 :LFSSLRKMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92561 # 1t1jA.254.34 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 254 :IYTELRKMG 1t1jA 28 :VAATIVRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92562 # 1m5wA.254.177 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 254 :IYTELRKMG 1m5wA 178 :AATFAASLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92563 # 1qlwA.254.271 read from T0547.t06.many.frag # found chain 1qlwA in training set T0547 254 :IYTELRKMG 1qlwA 272 :FIDALNAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92564 # 1ei6A.254.223 read from T0547.t06.many.frag # found chain 1ei6A in template set Warning: unaligning (T0547)M261 (1ei6A)Q232 because G (3-10) conformation "forbidden" or filtered. T0547 254 :IYTELRK 1ei6A 225 :YFKRYHE T0547 262 :G 1ei6A 233 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=92566 # 1ymtA.254.138 read from T0547.t06.many.frag # found chain 1ymtA in training set Warning: unaligning (T0547)M261 (1ymtA)L362 because G (3-10) conformation "forbidden" or filtered. T0547 254 :IYTELRK 1ymtA 355 :LVLQLHA T0547 262 :G 1ymtA 363 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=92568 # 1nigA.254.32 read from T0547.t06.many.frag # found chain 1nigA in template set T0547 254 :IYTELRKMG 1nigA 33 :YLGLAISEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92569 # 1nekA.254.94 read from T0547.t06.many.frag # found chain 1nekA in template set T0547 254 :IYTELRKMG 1nekA 95 :AILELEHMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92570 # 1aisB.254.131 read from T0547.t06.many.frag # found chain 1aisB in template set T0547 254 :IYTELRKMG 1aisB 1232 :ILDEAYKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92571 # 1sheA.254.24 read from T0547.t06.many.frag # found chain 1sheA in template set T0547 254 :IYTELRKMG 1sheA 17 :KMNELKMDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92572 # 7odcA.254.217 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 254 :IYTELRKMG 7odcA 218 :VFDMATEVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92573 # 1wkqA.254.20 read from T0547.t06.many.frag # found chain 1wkqA in training set T0547 254 :IYTELRKMG 1wkqA 13 :LACEGVNAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92574 # 1o7qA.254.221 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 254 :IYTELRKMG 1o7qA 301 :GILKDKKND Number of specific fragments extracted= 1 number of extra gaps= 0 total=92575 # 2cbiA.254.249 read from T0547.t06.many.frag # found chain 2cbiA in template set T0547 254 :IYTELRKMG 2cbiA 280 :KAESLYDMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92576 # 1ga6A.254.152 read from T0547.t06.many.frag # found chain 1ga6A in training set T0547 254 :IYTELRKMG 1ga6A 153 :IFATAAAQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92577 # 1hd2A.254.57 read from T0547.t06.many.frag # found chain 1hd2A in training set T0547 254 :IYTELRKMG 1hd2A 58 :QAEALKAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92578 # 1tv8A.254.150 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 254 :IYTELRKMG 1tv8A 151 :QIDYATSIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92579 # 1onrA.254.207 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 254 :IYTELRKMG 1onrA 209 :IYQYYKEHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92580 # 1ay7B.254.72 read from T0547.t06.many.frag # found chain 1ay7B in training set T0547 254 :IYTELRKMG 1ay7B 73 :VFREAKAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92581 # 1ezwA.254.309 read from T0547.t06.many.frag # found chain 1ezwA in training set T0547 254 :IYTELRKMG 1ezwA 310 :KIEELLKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92582 # 1vefA.254.296 read from T0547.t06.many.frag # found chain 1vefA in training set Warning: unaligning (T0547)M261 (1vefA)T304 because G (3-10) conformation "forbidden" or filtered. T0547 254 :IYTELRK 1vefA 297 :AIRYLER T0547 262 :G 1vefA 305 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=92584 # 1xd7A.254.42 read from T0547.t06.many.frag # found chain 1xd7A in template set Warning: unaligning (T0547)M261 (1xd7A)A50 because G (3-10) conformation "forbidden" or filtered. T0547 254 :IYTELRK 1xd7A 43 :MISLLKK T0547 262 :G 1xd7A 51 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=92586 # 1e4cP.254.12 read from T0547.t06.many.frag # found chain 1e4cP in training set T0547 254 :IYTELRKMG 1e4cP 13 :TCLEMTRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92587 # 1vsrA.254.79 read from T0547.t06.many.frag # found chain 1vsrA in training set T0547 254 :IYTELRKMG 1vsrA 100 :DISRLQELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92588 # 1ua4A.254.251 read from T0547.t06.many.frag # found chain 1ua4A in template set T0547 254 :IYTELRKMG 1ua4A 252 :NLEVLNERE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92589 # 1yzyA.254.337 read from T0547.t06.many.frag # found chain 1yzyA in template set T0547 254 :IYTELRKMG 1yzyA 337 :LAAKLKQYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92590 # 1r0mA.254.281 read from T0547.t06.many.frag # found chain 1r0mA in training set T0547 254 :IYTELRKMG 1r0mA 282 :VHDVAQSFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92591 # 1mtyD.254.371 read from T0547.t06.many.frag # found chain 1mtyD in training set T0547 254 :IYTELRKMG 1mtyD 386 :IYEEWRARG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92592 # 1d3yA.254.16 read from T0547.t06.many.frag # found chain 1d3yA in template set T0547 254 :IYTELRKMG 1d3yA 85 :FAKQLLETD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92593 # 1reqB.254.260 read from T0547.t06.many.frag # found chain 1reqB in template set T0547 254 :IYTELRKMG 1reqB 262 :YVRALVEQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92594 # 1ei6A.255.224 read from T0547.t06.many.frag # found chain 1ei6A in template set Warning: unaligning (T0547)A263 (1ei6A)A234 because P (beta_P) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 1ei6A 226 :FKRYHEQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=92595 # 1t1jA.255.35 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 255 :YTELRKMGA 1t1jA 29 :AATIVRAGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=92596 # 1m5wA.255.178 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 255 :YTELRKMGA 1m5wA 179 :ATFAASLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92597 # 7odcA.255.218 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A263 (7odcA)F227 because E (beta_S) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 7odcA 219 :FDMATEVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=92598 # 1qlwA.255.272 read from T0547.t06.many.frag # found chain 1qlwA in training set T0547 255 :YTELRKMGA 1qlwA 273 :IDALNAAGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92599 # 1nekA.255.95 read from T0547.t06.many.frag # found chain 1nekA in template set T0547 255 :YTELRKMGA 1nekA 96 :ILELEHMGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92600 # 1zy9A.255.324 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 255 :YTELRKMGA 1zy9A 313 :FSSLRKMGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92601 # 1o7qA.255.222 read from T0547.t06.many.frag # found chain 1o7qA in training set Warning: unaligning (T0547)M261 (1o7qA)N308 because G (3-10) conformation "forbidden" or filtered. T0547 255 :YTELRK 1o7qA 302 :ILKDKK T0547 262 :GA 1o7qA 309 :DI Number of specific fragments extracted= 2 number of extra gaps= 1 total=92603 # 1aisB.255.132 read from T0547.t06.many.frag # found chain 1aisB in template set Warning: unaligning (T0547)A263 (1aisB)L1241 because G (3-10) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 1aisB 1233 :LDEAYKRG Number of specific fragments extracted= 1 number of extra gaps= 1 total=92604 # 1r0mA.255.282 read from T0547.t06.many.frag # found chain 1r0mA in training set T0547 255 :YTELRKMGA 1r0mA 283 :HDVAQSFGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92605 # 1sheA.255.25 read from T0547.t06.many.frag # found chain 1sheA in template set T0547 255 :YTELRKMGA 1sheA 18 :MNELKMDGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92606 # 1hd2A.255.58 read from T0547.t06.many.frag # found chain 1hd2A in training set T0547 255 :YTELRKMGA 1hd2A 59 :AEALKAKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92607 # 1nigA.255.33 read from T0547.t06.many.frag # found chain 1nigA in template set Warning: unaligning (T0547)A263 because of BadResidue code BAD_PEPTIDE in next template residue (1nigA)K43 T0547 255 :YTELRKMG 1nigA 34 :LGLAISEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=92608 # 1ua4A.255.252 read from T0547.t06.many.frag # found chain 1ua4A in template set T0547 255 :YTELRKMGA 1ua4A 253 :LEVLNEREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92609 # 1wkqA.255.21 read from T0547.t06.many.frag # found chain 1wkqA in training set Warning: unaligning (T0547)M261 (1wkqA)A20 because G (3-10) conformation "forbidden" or filtered. T0547 255 :YTELRK 1wkqA 14 :ACEGVN T0547 262 :GA 1wkqA 21 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=92611 # 1xd7A.255.43 read from T0547.t06.many.frag # found chain 1xd7A in template set T0547 255 :YTELRKMGA 1xd7A 44 :ISLLKKADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92612 # 1tv8A.255.151 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 255 :YTELRKMGA 1tv8A 152 :IDYATSIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92613 # 1onrA.255.208 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 255 :YTELRKMGA 1onrA 210 :YQYYKEHGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92614 # 1wu7A.255.245 read from T0547.t06.many.frag # found chain 1wu7A in template set T0547 255 :YTELRKMGA 1wu7A 246 :EDLLASYGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92615 # 1ymtA.255.139 read from T0547.t06.many.frag # found chain 1ymtA in training set T0547 255 :YTELRKMGA 1ymtA 356 :VLQLHALQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92616 # 1vsrA.255.80 read from T0547.t06.many.frag # found chain 1vsrA in training set T0547 255 :YTELRKMGA 1vsrA 101 :ISRLQELGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=92617 # 1e4cP.255.13 read from T0547.t06.many.frag # found chain 1e4cP in training set T0547 255 :YTELRKMGA 1e4cP 14 :CLEMTRLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92618 # 1ga6A.255.153 read from T0547.t06.many.frag # found chain 1ga6A in training set T0547 255 :YTELRKMGA 1ga6A 154 :FATAAAQGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92619 # 2cbiA.255.250 read from T0547.t06.many.frag # found chain 2cbiA in template set T0547 255 :YTELRKMGA 2cbiA 281 :AESLYDMGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92620 # 1ezwA.255.310 read from T0547.t06.many.frag # found chain 1ezwA in training set Warning: unaligning (T0547)A263 (1ezwA)V319 because P (beta_P) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 1ezwA 311 :IEELLKAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=92621 # 1g73A.255.112 read from T0547.t06.many.frag # found chain 1g73A in template set T0547 255 :YTELRKMGA 1g73A 113 :AEAAYQTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92622 # 1yrtA.255.119 read from T0547.t06.many.frag # found chain 1yrtA in template set T0547 255 :YTELRKMGA 1yrtA 120 :LDYLRQAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92623 # 1hf2A.255.62 read from T0547.t06.many.frag # found chain 1hf2A in template set T0547 255 :YTELRKMGA 1hf2A 63 :VSHLRNLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92624 # 1mtyD.255.372 read from T0547.t06.many.frag # found chain 1mtyD in training set T0547 255 :YTELRKMGA 1mtyD 387 :YEEWRARGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=92625 # 1qwgA.255.90 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)A263 (1qwgA)F99 because P (beta_P) conformation "forbidden" or filtered. T0547 255 :YTELRKMG 1qwgA 91 :LNECEKLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=92626 # 1wu7A.256.246 read from T0547.t06.many.frag # found chain 1wu7A in template set T0547 256 :TELRKMGAK 1wu7A 247 :DLLASYGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92627 # 1r0mA.256.283 read from T0547.t06.many.frag # found chain 1r0mA in training set T0547 256 :TELRKMGAK 1r0mA 284 :DVAQSFGAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=92628 # 1t1jA.256.36 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 256 :TELRKMGAK 1t1jA 30 :ATIVRAGHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92629 # 1nekA.256.96 read from T0547.t06.many.frag # found chain 1nekA in template set Warning: unaligning (T0547)K264 (1nekA)P105 because N (gamma') conformation "forbidden" or filtered. T0547 256 :TELRKMGA 1nekA 97 :LELEHMGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=92630 # 1g73A.256.113 read from T0547.t06.many.frag # found chain 1g73A in template set T0547 256 :TELRKMGAK 1g73A 114 :EAAYQTGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92631 # 1m5wA.256.179 read from T0547.t06.many.frag # found chain 1m5wA in template set T0547 256 :TELRKMGAK 1m5wA 180 :TFAASLGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92632 # 1tueB.256.50 read from T0547.t06.many.frag # found chain 1tueB in template set Warning: unaligning (T0547)M261 (1tueB)H53 because G (3-10) conformation "forbidden" or filtered. T0547 256 :TELRK 1tueB 48 :FAARE T0547 262 :GAK 1tueB 54 :GIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=92634 # 1o7qA.256.223 read from T0547.t06.many.frag # found chain 1o7qA in training set T0547 256 :TELRKMGAK 1o7qA 303 :LKDKKNDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92635 # 1jx4A.256.191 read from T0547.t06.many.frag # found chain 1jx4A in training set T0547 256 :TELRKMGAK 1jx4A 192 :EKLKKLGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92636 # 2fokA.256.329 read from T0547.t06.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)M261 (2fokA)L335 because G (3-10) conformation "forbidden" or filtered. T0547 256 :TELRK 2fokA 330 :DNLKK T0547 262 :GAK 2fokA 336 :GFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=92638 # 3lzt.256.9 read from T0547.t06.many.frag # found chain 3lzt in training set T0547 256 :TELRKMGAK 3lzt 10 :AAMKRHGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92639 # 1ay7B.256.74 read from T0547.t06.many.frag # found chain 1ay7B in training set T0547 256 :TELRKMGAK 1ay7B 75 :REAKAEGCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92640 # 1vjjA.256.256 read from T0547.t06.many.frag # found chain 1vjjA in template set Warning: unaligning (T0547)A263 (1vjjA)L264 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1vjjA)S265 because P (beta_P) conformation "forbidden" or filtered. T0547 256 :TELRKMG 1vjjA 257 :KNWKKSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=92641 # 1vs0A.256.155 read from T0547.t06.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)A263 (1vs0A)W612 because P (beta_P) conformation "forbidden" or filtered. T0547 256 :TELRKMG 1vs0A 605 :ACSRKHG T0547 264 :K 1vs0A 613 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=92643 # 1qlwA.256.273 read from T0547.t06.many.frag # found chain 1qlwA in training set T0547 256 :TELRKMGAK 1qlwA 274 :DALNAAGGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92644 # 1aisB.256.133 read from T0547.t06.many.frag # found chain 1aisB in template set T0547 256 :TELRKMGAK 1aisB 1234 :DEAYKRGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92645 # 1jr2A.256.250 read from T0547.t06.many.frag # found chain 1jr2A in template set T0547 256 :TELRKMGAK 1jr2A 230 :RALAAQGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=92646 # 1zy9A.256.325 read from T0547.t06.many.frag # found chain 1zy9A in template set T0547 256 :TELRKMGAK 1zy9A 314 :SSLRKMGYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92647 # 1y88A.256.172 read from T0547.t06.many.frag # found chain 1y88A in template set Warning: unaligning (T0547)M261 (1y88A)I165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1y88A)S168 because P (beta_P) conformation "forbidden" or filtered. T0547 256 :TELRK 1y88A 160 :EKLRE T0547 262 :GA 1y88A 166 :GL Number of specific fragments extracted= 2 number of extra gaps= 2 total=92649 # 1tfzA.256.132 read from T0547.t06.many.frag # found chain 1tfzA in training set T0547 256 :TELRKMGAK 1tfzA 133 :SISVANGAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92650 # 1iow.256.101 read from T0547.t06.many.frag # found chain 1iow in template set T0547 256 :TELRKMGAK 1iow 102 :LLWQGAGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=92651 # 1onrA.256.209 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 256 :TELRKMGAK 1onrA 211 :QYYKEHGYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92652 # 1vk1A.256.114 read from T0547.t06.many.frag # found chain 1vk1A in training set Warning: unaligning (T0547)M261 (1vk1A)E120 because G (3-10) conformation "forbidden" or filtered. T0547 256 :TELRK 1vk1A 115 :ERLKA T0547 262 :GAK 1vk1A 121 :GLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=92654 1tf0B expands to /projects/compbio/data/pdb/1tf0.pdb.gz 1tf0B:# 1tf0B.256.15 read from T0547.t06.many.frag # adding 1tf0B to template set # found chain 1tf0B in template set T0547 256 :TELRKMGAK 1tf0B 16 :AELKKAGIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92655 # 1yrtA.256.120 read from T0547.t06.many.frag # found chain 1yrtA in template set Warning: unaligning (T0547)K264 (1yrtA)V129 because E (beta_S) conformation "forbidden" or filtered. T0547 256 :TELRKMGA 1yrtA 121 :DYLRQAGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=92656 # 1xi1A.256.177 read from T0547.t06.many.frag # found chain 1xi1A in template set T0547 256 :TELRKMGAK 1xi1A 178 :LIQFKQGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92657 # 1wd3A.256.4 read from T0547.t06.many.frag # found chain 1wd3A in training set T0547 256 :TELRKMGAK 1wd3A 22 :DIYEAGDTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=92658 # 1ua4A.256.253 read from T0547.t06.many.frag # found chain 1ua4A in template set T0547 256 :TELRKMGAK 1ua4A 254 :EVLNEREIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=92659 # 1umgA.256.80 read from T0547.t06.many.frag # found chain 1umgA in training set T0547 256 :TELRKMGAK 1umgA 83 :KVAKDLGLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92660 # 2aibA.256.60 read from T0547.t06.many.frag # found chain 2aibA in training set T0547 256 :TELRKMGAK 2aibA 61 :KKIVALNPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=92661 # 1wu7A.257.247 read from T0547.t06.many.frag # found chain 1wu7A in template set T0547 257 :ELRKMGAKN 1wu7A 248 :LLASYGVKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92662 # 1vjjA.257.257 read from T0547.t06.many.frag # found chain 1vjjA in template set Warning: unaligning (T0547)A263 (1vjjA)L264 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1vjjA)P266 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMG 1vjjA 258 :NWKKSG T0547 264 :K 1vjjA 265 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=92664 # 2atzA.257.92 read from T0547.t06.many.frag # found chain 2atzA in template set T0547 257 :ELRKMGAKN 2atzA 93 :LLREEGFMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92665 # 1h1nA.257.151 read from T0547.t06.many.frag # found chain 1h1nA in training set T0547 257 :ELRKMGAKN 1h1nA 152 :GIRSAGATS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92666 # 1w5qA.257.187 read from T0547.t06.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)A263 (1w5qA)H194 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1w5qA)N196 because G (3-10) conformation "forbidden" or filtered. T0547 257 :ELRKMG 1w5qA 188 :ALESAG T0547 264 :K 1w5qA 195 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=92668 # 1tqhA.257.78 read from T0547.t06.many.frag # found chain 1tqhA in training set T0547 257 :ELRKMGAKN 1tqhA 79 :FLKNKGYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92669 # 1jr2A.257.251 read from T0547.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0547)K264 (1jr2A)P238 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMGA 1jr2A 231 :ALAAQGL T0547 265 :N 1jr2A 239 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=92671 # 2fokA.257.330 read from T0547.t06.many.frag # found chain 2fokA in template set T0547 257 :ELRKMGAKN 2fokA 331 :NLKKLGFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92672 # 1muwA.257.272 read from T0547.t06.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)N265 (1muwA)G281 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMGAK 1muwA 273 :LLESAGYE Number of specific fragments extracted= 1 number of extra gaps= 1 total=92673 # 1m65A.257.229 read from T0547.t06.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)K264 (1m65A)A237 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1m65A)P238 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMGA 1m65A 230 :FLESRGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=92674 # 1nekA.257.97 read from T0547.t06.many.frag # found chain 1nekA in template set T0547 257 :ELRKMGAKN 1nekA 98 :ELEHMGLPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92675 # 1wb9A.257.560 read from T0547.t06.many.frag # found chain 1wb9A in template set T0547 257 :ELRKMGAKN 1wb9A 561 :RAYTLNYTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=92676 # 1t4bA.257.83 read from T0547.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)N265 (1t4bA)G92 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMGAK 1t4bA 84 :KLRESGWQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=92677 # 1tf0B.257.16 read from T0547.t06.many.frag # found chain 1tf0B in template set T0547 257 :ELRKMGAKN 1tf0B 17 :ELKKAGITS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92678 # 1vk1A.257.115 read from T0547.t06.many.frag # found chain 1vk1A in training set T0547 257 :ELRKMGAKN 1vk1A 116 :RLKAEGLEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92679 # 1w5tA.257.271 read from T0547.t06.many.frag # found chain 1w5tA in template set T0547 257 :ELRKMGAKN 1w5tA 272 :MAEAMGRDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92680 # 8abp.257.157 read from T0547.t06.many.frag # found chain 8abp in training set T0547 257 :ELRKMGAKN 8abp 158 :ALKAAGFPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92681 1r1mA expands to /projects/compbio/data/pdb/1r1m.pdb.gz 1r1mA:# 1r1mA.257.77 read from T0547.t06.many.frag # adding 1r1mA to template set # found chain 1r1mA in template set Warning: unaligning (T0547)A263 (1r1mA)V148 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMG 1r1mA 142 :NLVSNG T0547 264 :KN 1r1mA 149 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=92683 # 1tfzA.257.133 read from T0547.t06.many.frag # found chain 1tfzA in training set T0547 257 :ELRKMGAKN 1tfzA 134 :ISVANGAIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=92684 # 2tpsA.257.164 read from T0547.t06.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)N265 (2tpsA)I181 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMGAK 2tpsA 173 :AVRRQGIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=92685 # 1lxjA.257.65 read from T0547.t06.many.frag # found chain 1lxjA in training set Warning: unaligning (T0547)N265 (1lxjA)R74 because E (beta_S) conformation "forbidden" or filtered. T0547 257 :ELRKMGAK 1lxjA 66 :YGHEKGYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=92686 # 1umgA.257.81 read from T0547.t06.many.frag # found chain 1umgA in training set T0547 257 :ELRKMGAKN 1umgA 84 :VAKDLGLYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92687 # 1tueB.257.51 read from T0547.t06.many.frag # found chain 1tueB in template set Warning: unaligning (T0547)A263 (1tueB)I55 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMG 1tueB 49 :AAREHG T0547 264 :KN 1tueB 56 :QT Number of specific fragments extracted= 2 number of extra gaps= 1 total=92689 # 3lzt.257.10 read from T0547.t06.many.frag # found chain 3lzt in training set Warning: unaligning (T0547)N265 (3lzt)N19 because T (delta_L) conformation "forbidden" or filtered. T0547 257 :ELRKMGAK 3lzt 11 :AMKRHGLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=92690 # 1qw2A.257.81 read from T0547.t06.many.frag # found chain 1qw2A in training set Warning: unaligning (T0547)M261 (1qw2A)V99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1qw2A)P103 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRK 1qw2A 95 :EAQK T0547 262 :GAK 1qw2A 100 :GIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=92692 # 1wcwA.257.227 read from T0547.t06.many.frag # found chain 1wcwA in training set Warning: unaligning (T0547)N265 (1wcwA)P236 because P (beta_P) conformation "forbidden" or filtered. T0547 257 :ELRKMGAK 1wcwA 228 :ALREWGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=92693 # 1bykA.257.189 read from T0547.t06.many.frag # found chain 1bykA in template set T0547 257 :ELRKMGAKN 1bykA 250 :YLQEQRIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92694 # 1tzpA.257.64 read from T0547.t06.many.frag # found chain 1tzpA in training set T0547 257 :ELRKMGAKN 1tzpA 84 :QVSNLGMGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92695 # 1nytA.257.224 read from T0547.t06.many.frag # found chain 1nytA in training set T0547 257 :ELRKMGAKN 1nytA 225 :WCEQRGSKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92696 # 1r0mA.257.284 read from T0547.t06.many.frag # found chain 1r0mA in training set T0547 257 :ELRKMGAKN 1r0mA 285 :VAQSFGAPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92697 # 1wu7A.258.248 read from T0547.t06.many.frag # found chain 1wu7A in template set T0547 258 :LRKMGAKNL 1wu7A 249 :LASYGVKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92698 # 1muwA.258.273 read from T0547.t06.many.frag # found chain 1muwA in training set T0547 258 :LRKMGAKNL 1muwA 274 :LESAGYEGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=92699 # 1h1nA.258.152 read from T0547.t06.many.frag # found chain 1h1nA in training set T0547 258 :LRKMGAKNL 1h1nA 153 :IRSAGATSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92700 # 1wb9A.258.561 read from T0547.t06.many.frag # found chain 1wb9A in template set T0547 258 :LRKMGAKNL 1wb9A 562 :AYTLNYTCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=92701 # 1tqhA.258.79 read from T0547.t06.many.frag # found chain 1tqhA in training set T0547 258 :LRKMGAKNL 1tqhA 80 :LKNKGYEKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92702 # 1vjjA.258.258 read from T0547.t06.many.frag # found chain 1vjjA in template set Warning: unaligning (T0547)A263 (1vjjA)L264 because L (left) conformation "forbidden" or filtered. T0547 258 :LRKMG 1vjjA 259 :WKKSG T0547 264 :KNL 1vjjA 265 :SPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=92704 # 1bykA.258.190 read from T0547.t06.many.frag # found chain 1bykA in template set T0547 258 :LRKMGAKNL 1bykA 251 :LQEQRIDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92705 # 1w5qA.258.188 read from T0547.t06.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)M261 (1w5qA)A192 because G (3-10) conformation "forbidden" or filtered. T0547 258 :LRK 1w5qA 189 :LES T0547 262 :GAKNL 1w5qA 193 :GHTNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=92707 # 1itxA.258.288 read from T0547.t06.many.frag # found chain 1itxA in training set Warning: unaligning (T0547)K264 (1itxA)P327 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRKMGA 1itxA 321 :HLDAGV T0547 265 :NL 1itxA 328 :AA Number of specific fragments extracted= 2 number of extra gaps= 1 total=92709 # 1m65A.258.230 read from T0547.t06.many.frag # found chain 1m65A in training set T0547 258 :LRKMGAKNL 1m65A 231 :LESRGMAPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92710 # 1tjyA.258.207 read from T0547.t06.many.frag # found chain 1tjyA in training set T0547 258 :LRKMGAKNL 1tjyA 232 :AENLKRNNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92711 # 1w5tA.258.272 read from T0547.t06.many.frag # found chain 1w5tA in template set T0547 258 :LRKMGAKNL 1w5tA 273 :AEAMGRDSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92712 # 1woyA.258.272 read from T0547.t06.many.frag # found chain 1woyA in template set T0547 258 :LRKMGAKNL 1woyA 273 :LKAAGIPMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92713 # 2atzA.258.93 read from T0547.t06.many.frag # found chain 2atzA in template set Warning: unaligning (T0547)L266 (2atzA)F102 because Y (epsilon') conformation "forbidden" or filtered. T0547 258 :LRKMGAKN 2atzA 94 :LREEGFMN Number of specific fragments extracted= 1 number of extra gaps= 1 total=92714 # 1smbA.258.20 read from T0547.t06.many.frag # found chain 1smbA in training set Warning: unaligning (T0547)N265 (1smbA)P28 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRKMGAK 1smbA 21 :RQKHGVP T0547 266 :L 1smbA 29 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=92716 # 1nytA.258.225 read from T0547.t06.many.frag # found chain 1nytA in training set T0547 258 :LRKMGAKNL 1nytA 226 :CEQRGSKRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=92717 # 1tz9A.258.314 read from T0547.t06.many.frag # found chain 1tz9A in template set Warning: unaligning (T0547)A263 (1tz9A)Y310 because N (gamma') conformation "forbidden" or filtered. T0547 258 :LRKMG 1tz9A 305 :LVDVG T0547 264 :KNL 1tz9A 311 :EGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=92719 # 1tfzA.258.134 read from T0547.t06.many.frag # found chain 1tfzA in training set Warning: unaligning (T0547)K264 (1tfzA)I141 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRKMGA 1tfzA 135 :SVANGA T0547 265 :NL 1tfzA 142 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=92721 # 1iirA.258.173 read from T0547.t06.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)K264 (1iirA)P180 because P (beta_P) conformation "forbidden" or filtered. T0547 258 :LRKMGA 1iirA 174 :RDAIGL T0547 265 :NL 1iirA 181 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=92723 # 2fokA.258.331 read from T0547.t06.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)A263 (2fokA)F337 because D (zeta) conformation "forbidden" or filtered. T0547 258 :LRKMG 2fokA 332 :LKKLG T0547 264 :KNL 2fokA 338 :DEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=92725 # 8abp.258.158 read from T0547.t06.many.frag # found chain 8abp in training set T0547 258 :LRKMGAKNL 8abp 159 :LKAAGFPEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92726 # 1nekA.258.98 read from T0547.t06.many.frag # found chain 1nekA in template set T0547 258 :LRKMGAKNL 1nekA 99 :LEHMGLPFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92727 # 1ty9A.258.47 read from T0547.t06.many.frag # found chain 1ty9A in training set T0547 258 :LRKMGAKNL 1ty9A 48 :ARRVGIREP Number of specific fragments extracted= 1 number of extra gaps= 0 total=92728 # 1lxjA.258.66 read from T0547.t06.many.frag # found chain 1lxjA in training set Warning: unaligning (T0547)N265 (1lxjA)R74 because E (beta_S) conformation "forbidden" or filtered. T0547 258 :LRKMGAK 1lxjA 67 :GHEKGYV T0547 266 :L 1lxjA 75 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=92730 # 1t4bA.258.84 read from T0547.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)M261 (1t4bA)S88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1t4bA)Q91 because G (3-10) conformation "forbidden" or filtered. T0547 258 :LRK 1t4bA 85 :LRE T0547 262 :GA 1t4bA 89 :GW T0547 265 :NL 1t4bA 92 :GY Number of specific fragments extracted= 3 number of extra gaps= 2 total=92733 # 1jr2A.258.252 read from T0547.t06.many.frag # found chain 1jr2A in template set T0547 258 :LRKMGAKNL 1jr2A 232 :LAAQGLPVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92734 # 1tueB.258.52 read from T0547.t06.many.frag # found chain 1tueB in template set T0547 258 :LRKMGAKNL 1tueB 50 :AREHGIQTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92735 # 1hd2A.258.61 read from T0547.t06.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)M261 (1hd2A)K65 because G (3-10) conformation "forbidden" or filtered. T0547 258 :LRK 1hd2A 62 :LKA T0547 262 :GAKNL 1hd2A 66 :GVQVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=92737 # 1hi9A.258.45 read from T0547.t06.many.frag # found chain 1hi9A in template set T0547 258 :LRKMGAKNL 1hi9A 46 :AFNSGCTEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92738 # 1jx4A.258.193 read from T0547.t06.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)K264 (1jx4A)N200 because G (3-10) conformation "forbidden" or filtered. T0547 258 :LRKMGA 1jx4A 194 :LKKLGI T0547 265 :NL 1jx4A 201 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=92740 # 1wu7A.259.249 read from T0547.t06.many.frag # found chain 1wu7A in template set T0547 259 :RKMGAKNLK 1wu7A 250 :ASYGVKNVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92741 # 1smbA.259.21 read from T0547.t06.many.frag # found chain 1smbA in training set Warning: unaligning (T0547)N265 (1smbA)P28 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKMGAK 1smbA 22 :QKHGVP T0547 266 :LK 1smbA 29 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=92743 # 1muwA.259.274 read from T0547.t06.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)A263 (1muwA)Y279 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKMG 1muwA 275 :ESAG T0547 264 :KNLK 1muwA 280 :EGPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=92745 # 1h1nA.259.153 read from T0547.t06.many.frag # found chain 1h1nA in training set T0547 259 :RKMGAKNLK 1h1nA 154 :RSAGATSQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92746 # 1tqhA.259.80 read from T0547.t06.many.frag # found chain 1tqhA in training set Warning: unaligning (T0547)A263 (1tqhA)Y85 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1tqhA)A89 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKMG 1tqhA 81 :KNKG T0547 264 :KNL 1tqhA 86 :EKI Number of specific fragments extracted= 2 number of extra gaps= 2 total=92748 # 1itxA.259.289 read from T0547.t06.many.frag # found chain 1itxA in training set T0547 259 :RKMGAKNLK 1itxA 322 :LDAGVPAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92749 # 1wb9A.259.562 read from T0547.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0547)M261 (1wb9A)L565 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1wb9A)T568 because E (beta_S) conformation "forbidden" or filtered. T0547 259 :RK 1wb9A 563 :YT T0547 262 :GA 1wb9A 566 :NY T0547 265 :NLK 1wb9A 569 :CPT Number of specific fragments extracted= 3 number of extra gaps= 2 total=92752 # 1vjjA.259.259 read from T0547.t06.many.frag # found chain 1vjjA in template set Warning: unaligning (T0547)N265 (1vjjA)P266 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE in next template residue (1vjjA)Y269 T0547 259 :RKMGAK 1vjjA 260 :KKSGLS T0547 266 :L 1vjjA 267 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=92754 # 1iirA.259.174 read from T0547.t06.many.frag # found chain 1iirA in training set T0547 259 :RKMGAKNLK 1iirA 175 :DAIGLPPVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92755 # 1w5qA.259.189 read from T0547.t06.many.frag # found chain 1w5qA in training set T0547 259 :RKMGAKNLK 1w5qA 190 :ESAGHTNVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92756 # 1woyA.259.273 read from T0547.t06.many.frag # found chain 1woyA in template set T0547 259 :RKMGAKNLK 1woyA 274 :KAAGIPMYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=92757 # 1bykA.259.191 read from T0547.t06.many.frag # found chain 1bykA in template set T0547 259 :RKMGAKNLK 1bykA 252 :QEQRIDTLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=92758 # 1hd2A.259.62 read from T0547.t06.many.frag # found chain 1hd2A in training set T0547 259 :RKMGAKNLK 1hd2A 63 :KAKGVQVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92759 # 1tjyA.259.208 read from T0547.t06.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)M261 (1tjyA)L235 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1tjyA)N239 because L (left) conformation "forbidden" or filtered. T0547 259 :RK 1tjyA 233 :EN T0547 262 :GAK 1tjyA 236 :KRN T0547 266 :LK 1tjyA 240 :LA Number of specific fragments extracted= 3 number of extra gaps= 2 total=92762 # 1m65A.259.231 read from T0547.t06.many.frag # found chain 1m65A in training set T0547 259 :RKMGAKNLK 1m65A 232 :ESRGMAPIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92763 # 1lxjA.259.67 read from T0547.t06.many.frag # found chain 1lxjA in training set Warning: unaligning (T0547)A263 (1lxjA)Y72 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKMG 1lxjA 68 :HEKG T0547 264 :KNLK 1lxjA 73 :VRVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=92765 # 1f2vA.259.157 read from T0547.t06.many.frag # found chain 1f2vA in template set Warning: unaligning (T0547)N265 (1f2vA)K155 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKMGAK 1f2vA 149 :LRDGAP T0547 266 :LK 1f2vA 156 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=92767 # 1jx4A.259.194 read from T0547.t06.many.frag # found chain 1jx4A in training set Warning: unaligning (T0547)M261 (1jx4A)L197 because G (3-10) conformation "forbidden" or filtered. T0547 259 :RK 1jx4A 195 :KK T0547 262 :GAKNLK 1jx4A 198 :GINKLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=92769 # 1ty9A.259.48 read from T0547.t06.many.frag # found chain 1ty9A in training set Warning: unaligning (T0547)K264 (1ty9A)R54 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKMGA 1ty9A 49 :RRVGI T0547 265 :NLK 1ty9A 55 :EPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=92771 # 1w5tA.259.273 read from T0547.t06.many.frag # found chain 1w5tA in template set T0547 259 :RKMGAKNLK 1w5tA 274 :EAMGRDSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=92772 # 1dqzA.259.240 read from T0547.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0547)N265 (1dqzA)N249 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1dqzA)V251 because E (beta_S) conformation "forbidden" or filtered. T0547 259 :RKMGAK 1dqzA 243 :AADGGR T0547 266 :L 1dqzA 250 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=92774 # 1h7sA.259.46 read from T0547.t06.many.frag # found chain 1h7sA in template set T0547 259 :RKMGAKNLK 1h7sA 47 :LDAGATNID Number of specific fragments extracted= 1 number of extra gaps= 0 total=92775 # 1bo1A.259.271 read from T0547.t06.many.frag # found chain 1bo1A in template set Warning: unaligning (T0547)K264 (1bo1A)M277 because Y (epsilon') conformation "forbidden" or filtered. T0547 259 :RKMGA 1bo1A 272 :AQLKI T0547 265 :NLK 1bo1A 278 :DYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=92777 # 1wnaA.259.81 read from T0547.t06.many.frag # found chain 1wnaA in training set T0547 259 :RKMGAKNLK 1wnaA 82 :LAQGARRFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=92778 # 2atzA.259.94 read from T0547.t06.many.frag # found chain 2atzA in template set Warning: unaligning (T0547)N265 (2atzA)N101 because D (zeta) conformation "forbidden" or filtered. T0547 259 :RKMGAK 2atzA 95 :REEGFM T0547 266 :LK 2atzA 102 :FT Number of specific fragments extracted= 2 number of extra gaps= 1 total=92780 # 1e0tA.259.207 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)N265 (1e0tA)N214 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)H216 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)H216 T0547 259 :RKMGAK 1e0tA 208 :KAHGGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=92781 # 1rq2A.259.121 read from T0547.t06.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)A263 (1rq2A)A123 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKMG 1rq2A 119 :RKLG T0547 264 :KNLK 1rq2A 124 :LTVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=92783 # 1sfsA.259.112 read from T0547.t06.many.frag # found chain 1sfsA in training set Warning: unaligning (T0547)R259 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1sfsA)R90 Warning: unaligning (T0547)K260 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1sfsA)R90 Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE in next template residue (1sfsA)N96 Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE at template residue (1sfsA)N96 T0547 261 :MGAK 1sfsA 91 :LGIP T0547 267 :K 1sfsA 97 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=92785 # 1hi9A.259.46 read from T0547.t06.many.frag # found chain 1hi9A in template set T0547 259 :RKMGAKNLK 1hi9A 47 :FNSGCTEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92786 # 1nytA.259.226 read from T0547.t06.many.frag # found chain 1nytA in training set Warning: unaligning (T0547)A263 (1nytA)S231 because P (beta_P) conformation "forbidden" or filtered. T0547 259 :RKMG 1nytA 227 :EQRG T0547 264 :KNLK 1nytA 232 :KRNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=92788 # 1smbA.260.22 read from T0547.t06.many.frag # found chain 1smbA in training set Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1smbA)K33 T0547 260 :KMGAKNLK 1smbA 23 :KHGVPPLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=92789 # 1wu7A.260.250 read from T0547.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0547)K267 (1wu7A)R258 because E (beta_S) conformation "forbidden" or filtered. T0547 260 :KMGAKNL 1wu7A 251 :SYGVKNV T0547 268 :A 1wu7A 259 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=92791 # 1bykA.260.192 read from T0547.t06.many.frag # found chain 1bykA in template set T0547 260 :KMGAKNLKA 1bykA 253 :EQRIDTLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92792 # 1w5qA.260.190 read from T0547.t06.many.frag # found chain 1w5qA in training set T0547 260 :KMGAKNLKA 1w5qA 191 :SAGHTNVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92793 # 1muwA.260.275 read from T0547.t06.many.frag # found chain 1muwA in training set T0547 260 :KMGAKNLKA 1muwA 276 :SAGYEGPRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=92794 # 1e0tA.260.208 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)H216 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)H216 T0547 260 :KMGAKN 1e0tA 209 :AHGGEN T0547 268 :A 1e0tA 217 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=92796 # 1f2vA.260.158 read from T0547.t06.many.frag # found chain 1f2vA in template set Warning: unaligning (T0547)A263 (1f2vA)A153 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KMG 1f2vA 150 :RDG T0547 264 :KNLKA 1f2vA 154 :PKPAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=92798 # 1vkhA.260.109 read from T0547.t06.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)M261 (1vkhA)K99 because G (3-10) conformation "forbidden" or filtered. T0547 260 :K 1vkhA 98 :E T0547 262 :GAKNLKA 1vkhA 100 :GLTNINM Number of specific fragments extracted= 2 number of extra gaps= 1 total=92800 # 1hd2A.260.63 read from T0547.t06.many.frag # found chain 1hd2A in training set T0547 260 :KMGAKNLKA 1hd2A 64 :AKGVQVVAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=92801 # 1woyA.260.274 read from T0547.t06.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)K264 (1woyA)P279 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1woyA)M280 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KMGA 1woyA 275 :AAGI T0547 266 :LKA 1woyA 281 :YRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=92803 # 1h1nA.260.154 read from T0547.t06.many.frag # found chain 1h1nA in training set T0547 260 :KMGAKNLKA 1h1nA 155 :SAGATSQYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92804 # 1tjyA.260.209 read from T0547.t06.many.frag # found chain 1tjyA in training set T0547 260 :KMGAKNLKA 1tjyA 234 :NLKRNNLAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92805 # 1tqhA.260.81 read from T0547.t06.many.frag # found chain 1tqhA in training set Warning: unaligning (T0547)K267 (1tqhA)A89 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KMGAKNL 1tqhA 82 :NKGYEKI T0547 268 :A 1tqhA 90 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=92807 # 1xdnA.260.97 read from T0547.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)M261 (1xdnA)Y146 because G (3-10) conformation "forbidden" or filtered. T0547 260 :K 1xdnA 145 :K T0547 262 :GAKNLKA 1xdnA 147 :GLSRVGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=92809 # 1wb9A.260.563 read from T0547.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0547)N265 (1wb9A)C569 because P (beta_P) conformation "forbidden" or filtered. T0547 260 :KMGAK 1wb9A 564 :TLNYT T0547 266 :LKA 1wb9A 570 :PTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=92811 # 1wnaA.260.82 read from T0547.t06.many.frag # found chain 1wnaA in training set T0547 260 :KMGAKNLKA 1wnaA 83 :AQGARRFYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=92812 # 2b61A.260.148 read from T0547.t06.many.frag # found chain 2b61A in training set T0547 260 :KMGAKNLKA 2b61A 130 :HLGISHLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92813 # 1dqzA.260.241 read from T0547.t06.many.frag # found chain 1dqzA in training set T0547 260 :KMGAKNLKA 1dqzA 244 :ADGGRNGVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92814 # 1vjjA.260.260 read from T0547.t06.many.frag # found chain 1vjjA in template set Warning: unaligning (T0547)A263 (1vjjA)L264 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1vjjA)S265 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE in next template residue (1vjjA)Y269 Warning: unaligning (T0547)A268 because of BadResidue code BAD_PEPTIDE at template residue (1vjjA)Y269 T0547 260 :KMG 1vjjA 261 :KSG T0547 265 :NL 1vjjA 266 :PV Number of specific fragments extracted= 2 number of extra gaps= 2 total=92816 # 1dozA.260.208 read from T0547.t06.many.frag # found chain 1dozA in template set Warning: unaligning (T0547)L266 (1dozA)Y216 because Y (epsilon') conformation "forbidden" or filtered. T0547 260 :KMGAKN 1dozA 210 :GAGVSE T0547 267 :KA 1dozA 217 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=92818 # 1fsgA.260.166 read from T0547.t06.many.frag # found chain 1fsgA in training set T0547 260 :KMGAKNLKA 1fsgA 164 :AVGPKSMRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92819 # 1hi9A.260.47 read from T0547.t06.many.frag # found chain 1hi9A in template set Warning: unaligning (T0547)M261 (1hi9A)S49 because G (3-10) conformation "forbidden" or filtered. T0547 260 :K 1hi9A 48 :N T0547 262 :GAKNLKA 1hi9A 50 :GCTEVLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=92821 # 1iirA.260.175 read from T0547.t06.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)A268 (1iirA)D184 because D (zeta) conformation "forbidden" or filtered. T0547 260 :KMGAKNLK 1iirA 176 :AIGLPPVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=92822 # 1itxA.260.290 read from T0547.t06.many.frag # found chain 1itxA in training set T0547 260 :KMGAKNLKA 1itxA 323 :DAGVPAAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92823 # 2bjiA.260.183 read from T0547.t06.many.frag # found chain 2bjiA in training set Warning: unaligning (T0547)G262 (2bjiA)P1186 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (2bjiA)R1191 because Y (epsilon') conformation "forbidden" or filtered. T0547 260 :KM 2bjiA 1184 :CL T0547 263 :AKNL 2bjiA 1187 :IHGI T0547 268 :A 2bjiA 1192 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=92826 # 1h7sA.260.47 read from T0547.t06.many.frag # found chain 1h7sA in template set T0547 260 :KMGAKNLKA 1h7sA 48 :DAGATNIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92827 # 1xdzA.260.115 read from T0547.t06.many.frag # found chain 1xdzA in training set T0547 260 :KMGAKNLKA 1xdzA 115 :ALQLENTTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92828 # 1u9yA.260.254 read from T0547.t06.many.frag # found chain 1u9yA in template set Warning: unaligning (T0547)N265 (1u9yA)E260 because Y (epsilon') conformation "forbidden" or filtered. T0547 260 :KMGAK 1u9yA 255 :SAGVE T0547 266 :LKA 1u9yA 261 :VVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=92830 # 1ptmA.260.194 read from T0547.t06.many.frag # found chain 1ptmA in template set T0547 260 :KMGAKNLKA 1ptmA 195 :KFGIAEPRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92831 # 1lxjA.260.68 read from T0547.t06.many.frag # found chain 1lxjA in training set T0547 260 :KMGAKNLKA 1lxjA 69 :EKGYVRVHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92832 # 1bykA.261.193 read from T0547.t06.many.frag # found chain 1bykA in template set T0547 261 :MGAKNLKAI 1bykA 254 :QRIDTLQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92833 # 2bogX.261.207 read from T0547.t06.many.frag # found chain 2bogX in training set T0547 261 :MGAKNLKAI 2bogX 208 :IGNPSLRAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92834 # 1smbA.261.23 read from T0547.t06.many.frag # found chain 1smbA in training set Warning: unaligning (T0547)K264 (1smbA)P27 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1smbA)K33 T0547 261 :MGA 1smbA 24 :HGV T0547 265 :NLK 1smbA 28 :PLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=92836 # 1w5qA.261.191 read from T0547.t06.many.frag # found chain 1w5qA in training set T0547 261 :MGAKNLKAI 1w5qA 192 :AGHTNVRVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=92837 # 1mj5A.261.257 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)N265 (1mj5A)N262 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1mj5A)T264 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1mj5A)T264 T0547 261 :MGAK 1mj5A 258 :RTWP T0547 268 :AI 1mj5A 265 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=92839 # 1vkhA.261.110 read from T0547.t06.many.frag # found chain 1vkhA in template set T0547 261 :MGAKNLKAI 1vkhA 99 :KGLTNINMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92840 # 1tjyA.261.210 read from T0547.t06.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)K264 (1tjyA)N238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1tjyA)N239 because L (left) conformation "forbidden" or filtered. T0547 261 :MGA 1tjyA 235 :LKR T0547 266 :LKAI 1tjyA 240 :LAIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=92842 # 1wu7A.261.251 read from T0547.t06.many.frag # found chain 1wu7A in template set T0547 261 :MGAKNLKAI 1wu7A 252 :YGVKNVRYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92843 # 1e0tA.261.209 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)N265 (1e0tA)N214 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)H216 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)H216 T0547 261 :MGAK 1e0tA 210 :HGGE T0547 268 :AI 1e0tA 217 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=92845 # 1y1pA.261.118 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)G262 (1y1pA)A121 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1y1pA)T122 because D (zeta) conformation "forbidden" or filtered. T0547 261 :M 1y1pA 120 :A T0547 264 :KNLKAI 1y1pA 123 :PSVKRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=92847 # 1wbhA.261.151 read from T0547.t06.many.frag # found chain 1wbhA in training set T0547 261 :MGAKNLKAI 1wbhA 151 :GPFSQVRFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=92848 # 1v71A.261.196 read from T0547.t06.many.frag # found chain 1v71A in training set Warning: unaligning (T0547)K267 (1v71A)E203 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1v71A)V204 because E (beta_S) conformation "forbidden" or filtered. T0547 261 :MGAKNL 1v71A 197 :HFAPNC T0547 269 :I 1v71A 205 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=92850 # 2b61A.261.149 read from T0547.t06.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)N265 (2b61A)H135 because Y (epsilon') conformation "forbidden" or filtered. T0547 261 :MGAK 2b61A 131 :LGIS T0547 266 :LKAI 2b61A 136 :LKAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=92852 # 1f2vA.261.159 read from T0547.t06.many.frag # found chain 1f2vA in template set Warning: unaligning (T0547)A263 (1f2vA)A153 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :MG 1f2vA 151 :DG T0547 264 :KNLKAI 1f2vA 154 :PKPAAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=92854 # 1esc.261.173 read from T0547.t06.many.frag # found chain 1esc in template set Warning: unaligning (T0547)K267 (1esc)K180 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :MGAKNL 1esc 174 :YFAPDA T0547 268 :AI 1esc 181 :RV Number of specific fragments extracted= 2 number of extra gaps= 1 total=92856 # 2bzgA.261.127 read from T0547.t06.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)G262 (2bzgA)N142 because G (3-10) conformation "forbidden" or filtered. T0547 261 :M 2bzgA 141 :T T0547 263 :AKNLKAI 2bzgA 143 :IGKFDMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=92858 # 1es9A.261.163 read from T0547.t06.many.frag # found chain 1es9A in training set Warning: unaligning (T0547)A263 (1es9A)H166 because D (zeta) conformation "forbidden" or filtered. T0547 261 :MG 1es9A 164 :AG T0547 264 :KNLKAI 1es9A 167 :PRAHFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=92860 # 1muwA.261.276 read from T0547.t06.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)K264 (1muwA)E280 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1muwA)G281 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :MGA 1muwA 277 :AGY T0547 266 :LKAI 1muwA 282 :PRHF Number of specific fragments extracted= 2 number of extra gaps= 1 total=92862 # 1ptmA.261.195 read from T0547.t06.many.frag # found chain 1ptmA in template set T0547 261 :MGAKNLKAI 1ptmA 196 :FGIAEPRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92863 # 1woyA.261.275 read from T0547.t06.many.frag # found chain 1woyA in template set T0547 261 :MGAKNLKAI 1woyA 276 :AGIPMYRHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92864 # 2ar0A.261.256 read from T0547.t06.many.frag # found chain 2ar0A in template set Warning: unaligning (T0547)G262 (2ar0A)N258 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (2ar0A)P260 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :M 2ar0A 257 :E T0547 263 :A 2ar0A 259 :L T0547 265 :NLKAI 2ar0A 261 :KAHIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=92867 # 1njrA.261.179 read from T0547.t06.many.frag # found chain 1njrA in template set T0547 261 :MGAKNLKAI 1njrA 180 :HSPKDIDGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=92868 # 1xdzA.261.116 read from T0547.t06.many.frag # found chain 1xdzA in training set Warning: unaligning (T0547)A263 (1xdzA)L118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1xdzA)N120 because L (left) conformation "forbidden" or filtered. T0547 261 :MG 1xdzA 116 :LQ T0547 264 :K 1xdzA 119 :E T0547 266 :LKAI 1xdzA 121 :TTFC Number of specific fragments extracted= 3 number of extra gaps= 2 total=92871 # 1hd2A.261.64 read from T0547.t06.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)K267 (1hd2A)A71 because E (beta_S) conformation "forbidden" or filtered. T0547 261 :MGAKNL 1hd2A 65 :KGVQVV T0547 268 :AI 1hd2A 72 :CL Number of specific fragments extracted= 2 number of extra gaps= 1 total=92873 # 1id1A.261.66 read from T0547.t06.many.frag # found chain 1id1A in template set T0547 261 :MGAKNLKAI 1id1A 69 :AGIDRCRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92874 # 1tqhA.261.82 read from T0547.t06.many.frag # found chain 1tqhA in training set Warning: unaligning (T0547)N265 (1tqhA)K87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1tqhA)V90 because E (beta_S) conformation "forbidden" or filtered. T0547 261 :MGAK 1tqhA 83 :KGYE T0547 266 :LK 1tqhA 88 :IA T0547 269 :I 1tqhA 91 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=92877 # 2f8lA.261.126 read from T0547.t06.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)M261 (2f8lA)Q115 because S (epsilon) conformation "forbidden" or filtered. T0547 262 :GAKNLKAI 2f8lA 116 :KKKNVSIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=92878 # 1mqoA.261.197 read from T0547.t06.many.frag # found chain 1mqoA in training set Warning: unaligning (T0547)A263 (1mqoA)Y253 because D (zeta) conformation "forbidden" or filtered. T0547 261 :MG 1mqoA 251 :KR T0547 264 :KNLKAI 1mqoA 254 :RNINAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=92880 # 2bkxA.261.55 read from T0547.t06.many.frag # found chain 2bkxA in training set T0547 261 :MGAKNLKAI 2bkxA 56 :LSFQNITTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92881 # 1kwgA.261.127 read from T0547.t06.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)A263 (1kwgA)L130 because P (beta_P) conformation "forbidden" or filtered. T0547 261 :MG 1kwgA 128 :GG T0547 264 :KNLKAI 1kwgA 131 :EAVAGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=92883 # 1w5qA.262.192 read from T0547.t06.many.frag # found chain 1w5qA in training set T0547 262 :GAKNLKAIN 1w5qA 193 :GHTNVRVMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92884 # 2bogX.262.208 read from T0547.t06.many.frag # found chain 2bogX in training set T0547 262 :GAKNLKAIN 2bogX 209 :GNPSLRAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92885 # 1bykA.262.194 read from T0547.t06.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)N270 (1bykA)S263 because Y (epsilon') conformation "forbidden" or filtered. T0547 262 :GAKNLKAI 1bykA 255 :RIDTLQLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=92886 # 1wbhA.262.152 read from T0547.t06.many.frag # found chain 1wbhA in training set T0547 262 :GAKNLKAIN 1wbhA 152 :PFSQVRFCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=92887 # 1mj5A.262.258 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G262 (1mj5A)T259 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K264 (1mj5A)P261 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1mj5A)T264 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1mj5A)T264 T0547 263 :A 1mj5A 260 :W T0547 265 :N 1mj5A 262 :N T0547 268 :AIN 1mj5A 265 :EIT Number of specific fragments extracted= 3 number of extra gaps= 3 total=92890 # 2ar0A.262.257 read from T0547.t06.many.frag # found chain 2ar0A in template set Warning: unaligning (T0547)G262 (2ar0A)N258 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (2ar0A)K261 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (2ar0A)A266 because E (beta_S) conformation "forbidden" or filtered. T0547 263 :AK 2ar0A 259 :LP T0547 266 :LKAI 2ar0A 262 :AHIV Number of specific fragments extracted= 2 number of extra gaps= 3 total=92892 # 1esc.262.174 read from T0547.t06.many.frag # found chain 1esc in template set Warning: unaligning (T0547)A263 (1esc)A176 because D (zeta) conformation "forbidden" or filtered. T0547 262 :G 1esc 175 :F T0547 264 :KNLKAIN 1esc 177 :PDAKRVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=92894 # 1vkhA.262.111 read from T0547.t06.many.frag # found chain 1vkhA in template set T0547 262 :GAKNLKAIN 1vkhA 100 :GLTNINMVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92895 # 1y1pA.262.119 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)A263 (1y1pA)T122 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1y1pA)V129 because E (beta_S) conformation "forbidden" or filtered. T0547 262 :G 1y1pA 121 :A T0547 264 :KNLKAI 1y1pA 123 :PSVKRF Number of specific fragments extracted= 2 number of extra gaps= 2 total=92897 # 1ptmA.262.196 read from T0547.t06.many.frag # found chain 1ptmA in template set Warning: unaligning (T0547)N270 (1ptmA)V205 because E (beta_S) conformation "forbidden" or filtered. T0547 262 :GAKNLKAI 1ptmA 197 :GIAEPRIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=92898 # 1mqoA.262.198 read from T0547.t06.many.frag # found chain 1mqoA in training set T0547 262 :GAKNLKAIN 1mqoA 252 :RYRNINAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92899 # 1jx6A.262.230 read from T0547.t06.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)A263 (1jx6A)H255 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1jx6A)D259 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1jx6A)F260 because Y (epsilon') conformation "forbidden" or filtered. T0547 262 :G 1jx6A 254 :K T0547 264 :KNL 1jx6A 256 :PDV T0547 269 :IN 1jx6A 261 :IY Number of specific fragments extracted= 3 number of extra gaps= 2 total=92902 # 2bzgA.262.128 read from T0547.t06.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)K264 (2bzgA)G144 because S (epsilon) conformation "forbidden" or filtered. T0547 262 :GA 2bzgA 142 :NI T0547 265 :NLKAIN 2bzgA 145 :KFDMIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=92904 # 1v71A.262.197 read from T0547.t06.many.frag # found chain 1v71A in training set T0547 262 :GAKNLKAIN 1v71A 198 :FAPNCEVYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92905 # 1es9A.262.164 read from T0547.t06.many.frag # found chain 1es9A in training set Warning: unaligning (T0547)G262 (1es9A)G165 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A263 (1es9A)H166 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KNLKAIN 1es9A 167 :PRAHFLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=92906 # 2f8lA.262.127 read from T0547.t06.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)N265 (2f8lA)N119 because E (beta_S) conformation "forbidden" or filtered. T0547 262 :GAK 2f8lA 116 :KKK T0547 266 :LKAIN 2f8lA 120 :VSILD Number of specific fragments extracted= 2 number of extra gaps= 1 total=92908 # 1tjyA.262.211 read from T0547.t06.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)K267 (1tjyA)A241 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1tjyA)I242 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1tjyA)G244 because Y (epsilon') conformation "forbidden" or filtered. T0547 262 :GAKNL 1tjyA 236 :KRNNL T0547 269 :I 1tjyA 243 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=92910 # 1e0tA.262.210 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)H216 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)H216 T0547 262 :GAKN 1e0tA 211 :GGEN T0547 268 :AIN 1e0tA 217 :IIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=92912 # 1ye8A.262.126 read from T0547.t06.many.frag # found chain 1ye8A in training set T0547 262 :GAKNLKAIN 1ye8A 127 :HDPNVNVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92913 # 1woyA.262.276 read from T0547.t06.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)A263 (1woyA)I278 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1woyA)N285 because D (zeta) conformation "forbidden" or filtered. T0547 262 :G 1woyA 277 :G T0547 264 :KNLKAI 1woyA 279 :PMYRHL Number of specific fragments extracted= 2 number of extra gaps= 2 total=92915 # 1q0uA.262.177 read from T0547.t06.many.frag # found chain 1q0uA in template set Warning: unaligning (T0547)G262 (1q0uA)M178 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1q0uA)M184 because E (beta_S) conformation "forbidden" or filtered. T0547 263 :AKNLK 1q0uA 179 :PKDLQ T0547 269 :IN 1q0uA 185 :LV Number of specific fragments extracted= 2 number of extra gaps= 2 total=92917 # 1f2vA.262.160 read from T0547.t06.many.frag # found chain 1f2vA in template set Warning: unaligning (T0547)K264 (1f2vA)P154 because P (beta_P) conformation "forbidden" or filtered. T0547 262 :GA 1f2vA 152 :GA T0547 265 :NLKAIN 1f2vA 155 :KPAAIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=92919 # 12asA.262.160 read from T0547.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0547)G262 (12asA)L161 because P (beta_P) conformation "forbidden" or filtered. T0547 263 :AKNLKAIN 12asA 162 :PDQIHFVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=92920 # 1njrA.262.180 read from T0547.t06.many.frag # found chain 1njrA in template set Warning: unaligning (T0547)A268 (1njrA)G187 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1njrA)I189 because P (beta_P) conformation "forbidden" or filtered. T0547 262 :GAKNLK 1njrA 181 :SPKDID T0547 269 :I 1njrA 188 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=92922 # 1muwA.262.277 read from T0547.t06.many.frag # found chain 1muwA in training set T0547 262 :GAKNLKAIN 1muwA 278 :GYEGPRHFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=92923 # 1zkdA.262.77 read from T0547.t06.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)A268 (1zkdA)L84 because N (gamma') conformation "forbidden" or filtered. T0547 262 :GAKNLK 1zkdA 78 :EPQTLR T0547 269 :IN 1zkdA 85 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=92925 # 2b61A.262.150 read from T0547.t06.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)K264 (2b61A)S134 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (2b61A)H135 because Y (epsilon') conformation "forbidden" or filtered. T0547 262 :GA 2b61A 132 :GI T0547 266 :LKAIN 2b61A 136 :LKAII Number of specific fragments extracted= 2 number of extra gaps= 1 total=92927 # 1lnsA.262.360 read from T0547.t06.many.frag # found chain 1lnsA in template set Warning: unaligning (T0547)K264 (1lnsA)E363 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N265 (1lnsA)G364 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1lnsA)L367 because Y (epsilon') conformation "forbidden" or filtered. T0547 262 :GA 1lnsA 361 :GV T0547 266 :LK 1lnsA 365 :LE T0547 269 :IN 1lnsA 368 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=92930 # 1rqpA.262.33 read from T0547.t06.many.frag # found chain 1rqpA in training set Warning: unaligning (T0547)A263 (1rqpA)C35 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1rqpA)D42 because P (beta_P) conformation "forbidden" or filtered. T0547 262 :G 1rqpA 34 :I T0547 264 :KNLKAI 1rqpA 36 :PDVTVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=92932 # 1duvG.262.263 read from T0547.t06.many.frag # found chain 1duvG in training set T0547 262 :GAKNLKAIN 1duvG 264 :GNPEVKFLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=92933 # 1mqoA.263.199 read from T0547.t06.many.frag # found chain 1mqoA in training set Warning: unaligning (T0547)A263 (1mqoA)Y253 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1mqoA 254 :RNINAVVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=92934 # 1bykA.263.195 read from T0547.t06.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)N270 (1bykA)S263 because Y (epsilon') conformation "forbidden" or filtered. T0547 263 :AKNLKAI 1bykA 256 :IDTLQLA T0547 271 :L 1bykA 264 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=92936 # 1jx6A.263.231 read from T0547.t06.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)K267 (1jx6A)D259 because G (3-10) conformation "forbidden" or filtered. T0547 263 :AKNL 1jx6A 255 :HPDV T0547 268 :AINL 1jx6A 260 :FIYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=92938 # 1w5qA.263.193 read from T0547.t06.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)K267 (1w5qA)R198 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1w5qA)V199 because E (beta_S) conformation "forbidden" or filtered. T0547 263 :AKNL 1w5qA 194 :HTNV T0547 269 :INL 1w5qA 200 :MAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=92940 # 1y1pA.263.120 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)A263 (1y1pA)T122 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1y1pA 123 :PSVKRFVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=92941 # 1z7xW.263.282 read from T0547.t06.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)A263 (1z7xW)K282 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1z7xW 283 :ESLKELSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=92942 # 2bogX.263.209 read from T0547.t06.many.frag # found chain 2bogX in training set T0547 263 :AKNLKAINL 2bogX 210 :NPSLRAVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=92943 # 1esc.263.175 read from T0547.t06.many.frag # found chain 1esc in template set T0547 263 :AKNLKAINL 1esc 176 :APDAKRVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92944 # 1ptmA.263.197 read from T0547.t06.many.frag # found chain 1ptmA in template set T0547 263 :AKNLKAINL 1ptmA 198 :IAEPRILVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=92945 # 2ar0A.263.258 read from T0547.t06.many.frag # found chain 2ar0A in template set Warning: unaligning (T0547)K264 (2ar0A)P260 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (2ar0A)A266 because E (beta_S) conformation "forbidden" or filtered. T0547 263 :A 2ar0A 259 :L T0547 265 :NLKAI 2ar0A 261 :KAHIV T0547 271 :L 2ar0A 267 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=92948 # 1mj5A.263.259 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)N265 (1mj5A)N262 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1mj5A)T264 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1mj5A)T264 T0547 263 :AK 1mj5A 260 :WP T0547 268 :AINL 1mj5A 265 :EITV Number of specific fragments extracted= 2 number of extra gaps= 1 total=92950 # 1gudA.263.190 read from T0547.t06.many.frag # found chain 1gudA in training set Warning: unaligning (T0547)A263 (1gudA)N191 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1gudA 192 :PNIKAIYC Number of specific fragments extracted= 1 number of extra gaps= 1 total=92951 # 2bzgA.263.129 read from T0547.t06.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)K264 (2bzgA)G144 because S (epsilon) conformation "forbidden" or filtered. T0547 263 :A 2bzgA 143 :I T0547 265 :NLKAINL 2bzgA 145 :KFDMIWD Number of specific fragments extracted= 2 number of extra gaps= 1 total=92953 # 1v71A.263.198 read from T0547.t06.many.frag # found chain 1v71A in training set T0547 263 :AKNLKAINL 1v71A 199 :APNCEVYGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92954 # 1ye8A.263.127 read from T0547.t06.many.frag # found chain 1ye8A in training set T0547 263 :AKNLKAINL 1ye8A 128 :DPNVNVVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92955 # 1njrA.263.181 read from T0547.t06.many.frag # found chain 1njrA in template set Warning: unaligning (T0547)N265 (1njrA)D184 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1njrA)I189 because P (beta_P) conformation "forbidden" or filtered. T0547 263 :AK 1njrA 182 :PK T0547 266 :LKAI 1njrA 185 :IDGL T0547 271 :L 1njrA 190 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=92958 # 1wbhA.263.153 read from T0547.t06.many.frag # found chain 1wbhA in training set Warning: unaligning (T0547)A263 (1wbhA)F153 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1wbhA 154 :SQVRFCPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=92959 # 1i24A.263.144 read from T0547.t06.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)A263 (1i24A)G135 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1i24A)H139 because P (beta_P) conformation "forbidden" or filtered. T0547 264 :KNL 1i24A 136 :EEC T0547 268 :AINL 1i24A 140 :LVKL Number of specific fragments extracted= 2 number of extra gaps= 2 total=92961 # 1woyA.263.277 read from T0547.t06.many.frag # found chain 1woyA in template set T0547 263 :AKNLKAINL 1woyA 278 :IPMYRHLNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=92962 # 1q0uA.263.178 read from T0547.t06.many.frag # found chain 1q0uA in template set T0547 263 :AKNLKAINL 1q0uA 179 :PKDLQMLVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=92963 # 1oi7A.263.196 read from T0547.t06.many.frag # found chain 1oi7A in training set Warning: unaligning (T0547)A263 (1oi7A)D197 because N (gamma') conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1oi7A 198 :PETEAVVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=92964 # 2f8lA.263.128 read from T0547.t06.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)K267 (2f8lA)S121 because E (beta_S) conformation "forbidden" or filtered. T0547 263 :AKNL 2f8lA 117 :KKNV T0547 268 :AINL 2f8lA 122 :ILDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=92966 # 1rqpA.263.34 read from T0547.t06.many.frag # found chain 1rqpA in training set Warning: unaligning (T0547)A263 (1rqpA)C35 because D (zeta) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1rqpA 36 :PDVTVVDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=92967 # 1vkhA.263.112 read from T0547.t06.many.frag # found chain 1vkhA in template set Warning: unaligning (T0547)N265 (1vkhA)N103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1vkhA)M106 because P (beta_P) conformation "forbidden" or filtered. T0547 263 :AK 1vkhA 101 :LT T0547 266 :LK 1vkhA 104 :IN T0547 269 :INL 1vkhA 107 :VGH Number of specific fragments extracted= 3 number of extra gaps= 2 total=92970 # 1f2vA.263.161 read from T0547.t06.many.frag # found chain 1f2vA in template set Warning: unaligning (T0547)K264 (1f2vA)P154 because P (beta_P) conformation "forbidden" or filtered. T0547 263 :A 1f2vA 153 :A T0547 265 :NLKAINL 1f2vA 155 :KPAAILG Number of specific fragments extracted= 2 number of extra gaps= 1 total=92972 # 1p1mA.263.218 read from T0547.t06.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)A268 (1p1mA)T224 because E (beta_S) conformation "forbidden" or filtered. T0547 263 :AKNLK 1p1mA 219 :LKEVK T0547 269 :INL 1p1mA 225 :IAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=92974 # 1e0tA.263.211 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)A263 (1e0tA)G212 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)H216 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)H216 T0547 264 :KN 1e0tA 213 :EN T0547 268 :AINL 1e0tA 217 :IISK Number of specific fragments extracted= 2 number of extra gaps= 2 total=92976 # 1id1A.263.68 read from T0547.t06.many.frag # found chain 1id1A in template set T0547 263 :AKNLKAINL 1id1A 71 :IDRCRAILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92977 # 1tjyA.263.212 read from T0547.t06.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)K264 (1tjyA)N238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1tjyA)G244 because Y (epsilon') conformation "forbidden" or filtered. T0547 263 :A 1tjyA 237 :R T0547 265 :NLKAI 1tjyA 239 :NLAIV T0547 271 :L 1tjyA 245 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=92980 # 1zkdA.263.78 read from T0547.t06.many.frag # found chain 1zkdA in template set T0547 263 :AKNLKAINL 1zkdA 79 :PQTLRLIEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=92981 # 1z7xW.264.283 read from T0547.t06.many.frag # found chain 1z7xW in template set T0547 264 :KNLKAINLG 1z7xW 283 :ESLKELSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=92982 # 1woyA.264.278 read from T0547.t06.many.frag # found chain 1woyA in template set T0547 264 :KNLKAINLG 1woyA 279 :PMYRHLNVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92983 # 2bzgA.264.130 read from T0547.t06.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)K264 (2bzgA)G144 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)L271 (2bzgA)D151 because D (zeta) conformation "forbidden" or filtered. T0547 265 :NLKAIN 2bzgA 145 :KFDMIW T0547 272 :G 2bzgA 152 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=92985 # 1jx6A.264.232 read from T0547.t06.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)G272 (1jx6A)C264 because G (3-10) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1jx6A 256 :PDVDFIYA Number of specific fragments extracted= 1 number of extra gaps= 1 total=92986 # 1bykA.264.196 read from T0547.t06.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)N270 (1bykA)S263 because Y (epsilon') conformation "forbidden" or filtered. T0547 264 :KNLKAI 1bykA 257 :DTLQLA T0547 271 :LG 1bykA 264 :VG Number of specific fragments extracted= 2 number of extra gaps= 1 total=92988 # 1mqoA.264.200 read from T0547.t06.many.frag # found chain 1mqoA in training set T0547 264 :KNLKAINLG 1mqoA 254 :RNINAVVPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92989 # 2bogX.264.210 read from T0547.t06.many.frag # found chain 2bogX in training set T0547 264 :KNLKAINLG 2bogX 211 :PSLRAVIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92990 # 1w5qA.264.194 read from T0547.t06.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)N265 (1w5qA)N196 because G (3-10) conformation "forbidden" or filtered. T0547 264 :K 1w5qA 195 :T T0547 266 :LKAINLG 1w5qA 197 :VRVMAYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=92992 # 1y1pA.264.121 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 264 :KNLKAINLG 1y1pA 123 :PSVKRFVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=92993 # 2f8lA.264.129 read from T0547.t06.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)N265 (2f8lA)N119 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE in next template residue (2f8lA)C127 T0547 264 :K 2f8lA 118 :K T0547 266 :LKAINL 2f8lA 120 :VSILDP Number of specific fragments extracted= 2 number of extra gaps= 2 total=92995 # 1knwA.264.216 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 264 :KNLKAINLG 1knwA 217 :QDLQAISAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=92996 # 2ar0A.264.259 read from T0547.t06.many.frag # found chain 2ar0A in template set Warning: unaligning (T0547)N265 (2ar0A)K261 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (2ar0A)N268 because D (zeta) conformation "forbidden" or filtered. T0547 264 :K 2ar0A 260 :P T0547 266 :LKAINL 2ar0A 262 :AHIVAT Number of specific fragments extracted= 2 number of extra gaps= 2 total=92998 # 1zkdA.264.79 read from T0547.t06.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)N265 (1zkdA)T81 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K267 (1zkdA)R83 because P (beta_P) conformation "forbidden" or filtered. T0547 264 :K 1zkdA 80 :Q T0547 266 :L 1zkdA 82 :L T0547 268 :AINLG 1zkdA 84 :LIEIG Number of specific fragments extracted= 3 number of extra gaps= 2 total=93001 # 1esc.264.176 read from T0547.t06.many.frag # found chain 1esc in template set Warning: unaligning (T0547)G272 (1esc)G185 because P (beta_P) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1esc 177 :PDAKRVLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=93002 # 1mj5A.264.260 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)K264 (1mj5A)P261 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1mj5A)T264 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1mj5A)T264 Warning: unaligning (T0547)G272 (1mj5A)A269 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :N 1mj5A 262 :N T0547 268 :AINL 1mj5A 265 :EITV Number of specific fragments extracted= 2 number of extra gaps= 3 total=93004 # 1thfD.264.193 read from T0547.t06.many.frag # found chain 1thfD in training set T0547 264 :KNLKAINLG 1thfD 194 :TTLPIIASG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93005 # 1nrzA.264.96 read from T0547.t06.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)A268 (1nrzA)T102 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1nrzA)G106 because G (3-10) conformation "forbidden" or filtered. T0547 264 :KNLK 1nrzA 98 :VQIA T0547 269 :INL 1nrzA 103 :LNI Number of specific fragments extracted= 2 number of extra gaps= 2 total=93007 # 1zbsA.264.86 read from T0547.t06.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)A268 (1zbsA)R91 because E (beta_S) conformation "forbidden" or filtered. T0547 264 :KNLK 1zbsA 87 :PHCD T0547 269 :INLG 1zbsA 92 :IEVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=93009 # 1gudA.264.191 read from T0547.t06.many.frag # found chain 1gudA in training set T0547 264 :KNLKAINLG 1gudA 192 :PNIKAIYCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=93010 # 7odcA.264.226 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K267 (7odcA)H230 because G (3-10) conformation "forbidden" or filtered. T0547 264 :KNL 7odcA 227 :FSM T0547 268 :AINLG 7odcA 231 :LLDIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=93012 # 1xqwA.264.119 read from T0547.t06.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)N270 (1xqwA)I126 because E (beta_S) conformation "forbidden" or filtered. T0547 264 :KNLKAI 1xqwA 120 :DHLKGL T0547 271 :LG 1xqwA 127 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=93014 # 1njrA.264.182 read from T0547.t06.many.frag # found chain 1njrA in template set Warning: unaligning (T0547)G272 (1njrA)P191 because P (beta_P) conformation "forbidden" or filtered. T0547 264 :KNLKAINL 1njrA 183 :KDIDGLII Number of specific fragments extracted= 1 number of extra gaps= 1 total=93015 # 1ptmA.264.198 read from T0547.t06.many.frag # found chain 1ptmA in template set T0547 264 :KNLKAINLG 1ptmA 199 :AEPRILVCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93016 # 1xrjA.264.17 read from T0547.t06.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)L266 because first residue in template chain is (1xrjA)P20 Warning: unaligning (T0547)A268 (1xrjA)L22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1xrjA)S26 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :K 1xrjA 21 :F T0547 269 :INL 1xrjA 23 :IGV Number of specific fragments extracted= 2 number of extra gaps= 2 total=93018 # 1dc1A.264.272 read from T0547.t06.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)K267 (1dc1A)K276 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1dc1A)G281 because E (beta_S) conformation "forbidden" or filtered. T0547 264 :KNL 1dc1A 273 :LSP T0547 268 :AINL 1dc1A 277 :TIFI Number of specific fragments extracted= 2 number of extra gaps= 2 total=93020 # 1sheA.264.33 read from T0547.t06.many.frag # found chain 1sheA in template set T0547 264 :KNLKAINLG 1sheA 26 :FNPDIILFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93021 # 2ab0A.264.64 read from T0547.t06.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)K264 because of BadResidue code BAD_PEPTIDE in next template residue (2ab0A)E66 Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE at template residue (2ab0A)E66 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 Warning: unaligning (T0547)G272 (2ab0A)P73 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINL 2ab0A 68 :DVIVL Number of specific fragments extracted= 1 number of extra gaps= 2 total=93022 # 1oi7A.264.197 read from T0547.t06.many.frag # found chain 1oi7A in training set T0547 264 :KNLKAINLG 1oi7A 198 :PETEAVVLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=93023 # 1i24A.264.145 read from T0547.t06.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)K267 (1i24A)H139 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1i24A)G144 because P (beta_P) conformation "forbidden" or filtered. T0547 264 :KNL 1i24A 136 :EEC T0547 268 :AINL 1i24A 140 :LVKL Number of specific fragments extracted= 2 number of extra gaps= 2 total=93025 # 1nw3A.264.154 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 264 :KNLKAINLG 1nw3A 155 :DDDLFVDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93026 # 7odcA.265.227 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 265 :NLKAINLGG 7odcA 228 :SMHLLDIGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93027 # 1nrzA.265.97 read from T0547.t06.many.frag # found chain 1nrzA in training set T0547 265 :NLKAINLGG 1nrzA 99 :QIATLNIGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93028 # 1knwA.265.217 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 265 :NLKAINLGG 1knwA 218 :DLQAISAGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93029 # 1woyA.265.279 read from T0547.t06.many.frag # found chain 1woyA in template set T0547 265 :NLKAINLGG 1woyA 280 :MYRHLNVGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93030 # 1zkdA.265.80 read from T0547.t06.many.frag # found chain 1zkdA in template set T0547 265 :NLKAINLGG 1zkdA 81 :TLRLIEIGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=93031 # 1fobA.265.126 read from T0547.t06.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)N265 (1fobA)D127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1fobA)N135 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LKAINLG 1fobA 128 :IEIISIG Number of specific fragments extracted= 1 number of extra gaps= 2 total=93032 # 1xrjA.265.18 read from T0547.t06.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)L266 because first residue in template chain is (1xrjA)P20 Warning: unaligning (T0547)G273 (1xrjA)G27 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :KAINLG 1xrjA 21 :FLIGVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=93033 # 1nw3A.265.155 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 265 :NLKAINLGG 1nw3A 156 :DDLFVDLGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=93034 # 2f8lA.265.130 read from T0547.t06.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE in next template residue (2f8lA)C127 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (2f8lA)C127 T0547 265 :NLKAINL 2f8lA 119 :NVSILDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=93035 # 2ab0A.265.65 read from T0547.t06.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)N265 because of BadResidue code BAD_PEPTIDE at template residue (2ab0A)E66 Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 Warning: unaligning (T0547)G272 (2ab0A)P73 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINL 2ab0A 68 :DVIVL T0547 273 :G 2ab0A 74 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=93037 # 1thfD.265.194 read from T0547.t06.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)K267 (1thfD)P197 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1thfD)I198 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N270 (1thfD)A200 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NL 1thfD 195 :TL T0547 269 :I 1thfD 199 :I T0547 271 :LGG 1thfD 201 :SGG Number of specific fragments extracted= 3 number of extra gaps= 2 total=93040 # 1jg1A.265.91 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)K267 (1jg1A)N94 because N (gamma') conformation "forbidden" or filtered. T0547 265 :NL 1jg1A 92 :GM T0547 268 :AINLGG 1jg1A 95 :ILEVGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=93042 # 1zz1A.265.256 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)A268 (1zz1A)L260 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :NLK 1zz1A 257 :RPQ T0547 269 :INLGG 1zz1A 261 :IIVGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=93044 # 1l5oA.265.108 read from T0547.t06.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)N265 (1l5oA)K109 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A268 (1l5oA)V112 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1l5oA)G116 because D (zeta) conformation "forbidden" or filtered. T0547 266 :LK 1l5oA 110 :VH T0547 269 :INL 1l5oA 113 :IDV T0547 273 :G 1l5oA 117 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=93047 # 2bzgA.265.131 read from T0547.t06.many.frag # found chain 2bzgA in template set T0547 265 :NLKAINLGG 2bzgA 145 :KFDMIWDRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93048 # 1w5qA.265.195 read from T0547.t06.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)A268 (1w5qA)V199 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :NLK 1w5qA 196 :NVR T0547 269 :INLGG 1w5qA 200 :MAYSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=93050 # 1mj5A.265.261 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1mj5A)T264 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1mj5A)T264 Warning: unaligning (T0547)G272 (1mj5A)A269 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :N 1mj5A 262 :N T0547 268 :AINL 1mj5A 265 :EITV T0547 273 :G 1mj5A 270 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=93053 # 1dc1A.265.273 read from T0547.t06.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)K267 (1dc1A)K276 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1dc1A)G281 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :NL 1dc1A 274 :SP T0547 268 :AINL 1dc1A 277 :TIFI T0547 273 :G 1dc1A 282 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=93056 # 1jx6A.265.233 read from T0547.t06.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)G273 (1jx6A)S265 because Y (epsilon') conformation "forbidden" or filtered. T0547 265 :NLKAINLG 1jx6A 257 :DVDFIYAC Number of specific fragments extracted= 1 number of extra gaps= 1 total=93057 # 1zbsA.265.87 read from T0547.t06.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)G272 (1zbsA)A95 because E (beta_S) conformation "forbidden" or filtered. T0547 265 :NLKAINL 1zbsA 88 :HCDRIEV T0547 273 :G 1zbsA 96 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=93059 # 1bykA.265.197 read from T0547.t06.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)N270 (1bykA)S263 because Y (epsilon') conformation "forbidden" or filtered. T0547 265 :NLKAI 1bykA 258 :TLQLA T0547 271 :LGG 1bykA 264 :VGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=93061 # 1jqnA.265.573 read from T0547.t06.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)N270 (1jqnA)H579 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1jqnA)R581 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NLKAI 1jqnA 574 :ELTLF T0547 271 :L 1jqnA 580 :G T0547 273 :G 1jqnA 582 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=93064 # 1esc.265.177 read from T0547.t06.many.frag # found chain 1esc in template set Warning: unaligning (T0547)G272 (1esc)G185 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NLKAINL 1esc 178 :DAKRVLV T0547 273 :G 1esc 186 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=93066 # 1mugA.265.99 read from T0547.t06.many.frag # found chain 1mugA in training set T0547 265 :NLKAINLGG 1mugA 100 :QPQALAILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93067 # 2tpsA.265.171 read from T0547.t06.many.frag # found chain 2tpsA in training set Warning: unaligning (T0547)K267 (2tpsA)P182 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NL 2tpsA 180 :SI T0547 268 :AINLGG 2tpsA 183 :IVGIGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=93069 # 2etvA.265.175 read from T0547.t06.many.frag # found chain 2etvA in training set T0547 265 :NLKAINLGG 2etvA 188 :ESPTVYVGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93070 # 1i24A.265.146 read from T0547.t06.many.frag # found chain 1i24A in template set Warning: unaligning (T0547)G273 (1i24A)T145 because Y (epsilon') conformation "forbidden" or filtered. T0547 265 :NLKAINLG 1i24A 137 :ECHLVKLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=93071 # 1usgA.265.192 read from T0547.t06.many.frag # found chain 1usgA in training set T0547 265 :NLKAINLGG 1usgA 193 :NIDFVYYGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93072 # 2ar0A.265.260 read from T0547.t06.many.frag # found chain 2ar0A in template set Warning: unaligning (T0547)L271 (2ar0A)T267 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (2ar0A)P269 because P (beta_P) conformation "forbidden" or filtered. T0547 265 :NLKAIN 2ar0A 261 :KAHIVA T0547 272 :G 2ar0A 268 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=93074 # 1i4wA.265.58 read from T0547.t06.many.frag # found chain 1i4wA in template set T0547 265 :NLKAINLGG 1i4wA 47 :ELKVLDLYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=93075 # 7odcA.266.228 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G272 (7odcA)G235 because S (epsilon) conformation "forbidden" or filtered. T0547 266 :LKAINL 7odcA 229 :MHLLDI T0547 273 :GG 7odcA 236 :GG Number of specific fragments extracted= 2 number of extra gaps= 1 total=93077 # 1knwA.266.218 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L266 (1knwA)L219 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :KAINLGGG 1knwA 220 :QAISAGGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=93078 # 1woyA.266.280 read from T0547.t06.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)G272 (1woyA)G287 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINL 1woyA 281 :YRHLNV T0547 273 :GG 1woyA 288 :GF Number of specific fragments extracted= 2 number of extra gaps= 1 total=93080 # 1nrzA.266.98 read from T0547.t06.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)N270 (1nrzA)N104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1nrzA)G106 because G (3-10) conformation "forbidden" or filtered. T0547 266 :LKAI 1nrzA 100 :IATL T0547 271 :L 1nrzA 105 :I T0547 273 :GG 1nrzA 107 :GM Number of specific fragments extracted= 3 number of extra gaps= 2 total=93083 # 1zkdA.266.81 read from T0547.t06.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)G274 (1zkdA)G90 because S (epsilon) conformation "forbidden" or filtered. T0547 266 :LKAINLGG 1zkdA 82 :LRLIEIGP Number of specific fragments extracted= 1 number of extra gaps= 1 total=93084 # 1nw3A.266.156 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 266 :LKAINLGGG 1nw3A 157 :DLFVDLGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93085 # 1xrjA.266.19 read from T0547.t06.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)L266 because first residue in template chain is (1xrjA)P20 Warning: unaligning (T0547)G272 (1xrjA)S26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1xrjA)G28 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINL 1xrjA 21 :FLIGV T0547 273 :G 1xrjA 27 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=93087 # 1mj5A.266.262 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)L266 because of BadResidue code BAD_PEPTIDE in next template residue (1mj5A)T264 Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1mj5A)T264 Warning: unaligning (T0547)G273 (1mj5A)G270 because Y (epsilon') conformation "forbidden" or filtered. T0547 268 :AINLG 1mj5A 265 :EITVA T0547 274 :G 1mj5A 271 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=93089 # 2ab0A.266.66 read from T0547.t06.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)L266 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ab0A)Y67 T0547 267 :KAINLGGG 2ab0A 68 :DVIVLPGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=93090 # 1fobA.266.127 read from T0547.t06.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)G272 (1fobA)G134 because S (epsilon) conformation "forbidden" or filtered. T0547 266 :LKAINL 1fobA 128 :IEIISI T0547 273 :GG 1fobA 135 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=93092 # 2bzgA.266.132 read from T0547.t06.many.frag # found chain 2bzgA in template set Warning: unaligning (T0547)N270 (2bzgA)W150 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LKAI 2bzgA 146 :FDMI T0547 271 :LGGG 2bzgA 151 :DRGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=93094 # 2f8lA.266.131 read from T0547.t06.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)G272 because of BadResidue code BAD_PEPTIDE in next template residue (2f8lA)C127 Warning: unaligning (T0547)G273 because of BadResidue code BAD_PEPTIDE at template residue (2f8lA)C127 T0547 266 :LKAINL 2f8lA 120 :VSILDP T0547 274 :G 2f8lA 128 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=93096 # 1jg1A.266.92 read from T0547.t06.many.frag # found chain 1jg1A in training set T0547 266 :LKAINLGGG 1jg1A 93 :MNILEVGTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93097 # 1zz1A.266.257 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G272 (1zz1A)G264 because N (gamma') conformation "forbidden" or filtered. T0547 266 :LKAINL 1zz1A 258 :PQLIIV T0547 273 :GG 1zz1A 265 :SG Number of specific fragments extracted= 2 number of extra gaps= 1 total=93099 # 1dc1A.266.274 read from T0547.t06.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)G272 (1dc1A)G281 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1dc1A)A283 because D (zeta) conformation "forbidden" or filtered. T0547 266 :LKAINL 1dc1A 275 :PKTIFI T0547 273 :G 1dc1A 282 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=93101 # 1thfD.266.195 read from T0547.t06.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)G274 (1thfD)A204 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINLGG 1thfD 196 :LPIIASGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=93102 # 1rtqA.266.88 read from T0547.t06.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)G274 (1rtqA)H97 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LKAINLGG 1rtqA 89 :DEWIVIGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=93103 # 1i4wA.266.59 read from T0547.t06.many.frag # found chain 1i4wA in template set T0547 266 :LKAINLGGG 1i4wA 48 :LKVLDLYPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93104 # 1qvzA.266.98 read from T0547.t06.many.frag # found chain 1qvzA in template set T0547 266 :LKAINLGGG 1qvzA 99 :YQIFMASAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93105 # 1jqnA.266.574 read from T0547.t06.many.frag # found chain 1jqnA in template set Warning: unaligning (T0547)G272 (1jqnA)R581 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1jqnA)G583 because S (epsilon) conformation "forbidden" or filtered. T0547 266 :LKAINL 1jqnA 575 :LTLFHG T0547 273 :G 1jqnA 582 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=93107 # 1xqwA.266.121 read from T0547.t06.many.frag # found chain 1xqwA in template set T0547 266 :LKAINLGGG 1xqwA 122 :LKGLIVSGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93108 # 1l5oA.266.109 read from T0547.t06.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)K267 (1l5oA)H111 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1l5oA)D118 because N (gamma') conformation "forbidden" or filtered. T0547 266 :L 1l5oA 110 :V T0547 268 :AINLGG 1l5oA 112 :VIDVGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=93110 # 1w5qA.266.196 read from T0547.t06.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)K267 (1w5qA)R198 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1w5qA)A204 because D (zeta) conformation "forbidden" or filtered. T0547 266 :L 1w5qA 197 :V T0547 268 :AINLG 1w5qA 199 :VMAYS T0547 274 :G 1w5qA 205 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=93113 # 2etvA.266.176 read from T0547.t06.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)K267 (2etvA)P190 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (2etvA)I197 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :L 2etvA 189 :S T0547 268 :AINLGG 2etvA 191 :TVYVGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=93115 # 1t0bA.266.97 read from T0547.t06.many.frag # found chain 1t0bA in training set Warning: unaligning (T0547)G272 (1t0bA)H101 because S (epsilon) conformation "forbidden" or filtered. T0547 266 :LKAINL 1t0bA 95 :MGLIVL T0547 273 :GG 1t0bA 102 :SG Number of specific fragments extracted= 2 number of extra gaps= 1 total=93117 # 1z7xW.266.285 read from T0547.t06.many.frag # found chain 1z7xW in template set Warning: unaligning (T0547)G272 (1z7xW)A291 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINL 1z7xW 285 :LKELSL T0547 273 :GG 1z7xW 292 :GN Number of specific fragments extracted= 2 number of extra gaps= 1 total=93119 # 1esc.266.178 read from T0547.t06.many.frag # found chain 1esc in template set Warning: unaligning (T0547)G273 (1esc)Y186 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINLG 1esc 179 :AKRVLVG T0547 274 :G 1esc 187 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=93121 # 2bw4A.266.171 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)G272 (2bw4A)V178 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (2bw4A)G179 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (2bw4A)E180 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LKAINL 2bw4A 172 :YDKIYY Number of specific fragments extracted= 1 number of extra gaps= 1 total=93122 # 1zedA.266.195 read from T0547.t06.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)G272 (1zedA)G202 because P (beta_P) conformation "forbidden" or filtered. T0547 266 :LKAINL 1zedA 196 :IDVILG T0547 273 :GG 1zedA 203 :GR Number of specific fragments extracted= 2 number of extra gaps= 1 total=93124 # 1uteA.266.177 read from T0547.t06.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)G272 (1uteA)A184 because E (beta_S) conformation "forbidden" or filtered. T0547 266 :LKAINL 1uteA 178 :EDYVLV T0547 273 :GG 1uteA 185 :GH Number of specific fragments extracted= 2 number of extra gaps= 1 total=93126 # 7odcA.267.229 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 267 :KAINLGGGL 7odcA 230 :HLLDIGGGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=93127 # 1knwA.267.219 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G272 (1knwA)G225 because S (epsilon) conformation "forbidden" or filtered. T0547 267 :KAINL 1knwA 220 :QAISA T0547 273 :GGL 1knwA 226 :GGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=93129 # 1woyA.267.281 read from T0547.t06.many.frag # found chain 1woyA in template set T0547 267 :KAINLGGGL 1woyA 282 :RHLNVGGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=93130 # 1nw3A.267.157 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 267 :KAINLGGGL 1nw3A 158 :LFVDLGSGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=93131 # 1rtqA.267.89 read from T0547.t06.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)K267 (1rtqA)E90 because E (beta_S) conformation "forbidden" or filtered. T0547 268 :AINLGGGL 1rtqA 91 :WIVIGGHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=93132 # 1xrjA.267.20 read from T0547.t06.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)G272 (1xrjA)S26 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :KAINL 1xrjA 21 :FLIGV T0547 273 :GGL 1xrjA 27 :GGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=93134 # 1nrzA.267.99 read from T0547.t06.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)G272 (1nrzA)G106 because G (3-10) conformation "forbidden" or filtered. T0547 267 :KAINL 1nrzA 101 :ATLNI T0547 273 :GGL 1nrzA 107 :GMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=93136 # 1mj5A.267.263 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)K267 because of BadResidue code BAD_PEPTIDE at template residue (1mj5A)T264 Warning: unaligning (T0547)A268 (1mj5A)E265 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :INLGGGL 1mj5A 266 :ITVAGAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=93137 # 1fobA.267.128 read from T0547.t06.many.frag # found chain 1fobA in training set T0547 267 :KAINLGGGL 1fobA 129 :EIISIGNEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=93138 # 1zz1A.267.258 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G272 (1zz1A)G264 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1zz1A)S265 because N (gamma') conformation "forbidden" or filtered. T0547 267 :KAINL 1zz1A 259 :QLIIV T0547 274 :GL 1zz1A 266 :GF Number of specific fragments extracted= 2 number of extra gaps= 1 total=93140 # 1zkdA.267.82 read from T0547.t06.many.frag # found chain 1zkdA in template set T0547 267 :KAINLGGGL 1zkdA 83 :RLIEIGPGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=93141 # 1xqwA.267.122 read from T0547.t06.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)A268 (1xqwA)G124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1xqwA)G130 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :K 1xqwA 123 :K T0547 269 :INLGG 1xqwA 125 :LIVSG T0547 275 :L 1xqwA 131 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=93144 # 1jg1A.267.93 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)G274 (1jg1A)G101 because S (epsilon) conformation "forbidden" or filtered. T0547 267 :KAINLGG 1jg1A 94 :NILEVGT T0547 275 :L 1jg1A 102 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=93146 # 2ab0A.267.67 read from T0547.t06.many.frag # found chain 2ab0A in training set Warning: unaligning (T0547)N270 (2ab0A)V71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (2ab0A)P73 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAI 2ab0A 68 :DVI T0547 271 :L 2ab0A 72 :L T0547 273 :GGL 2ab0A 74 :GGI Number of specific fragments extracted= 3 number of extra gaps= 2 total=93149 # 1uteA.267.178 read from T0547.t06.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)N270 (1uteA)L182 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1uteA)G185 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :KAI 1uteA 179 :DYV T0547 271 :LG 1uteA 183 :VA T0547 274 :GL 1uteA 186 :HY Number of specific fragments extracted= 3 number of extra gaps= 2 total=93152 # 1dc1A.267.275 read from T0547.t06.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)A268 (1dc1A)T277 because E (beta_S) conformation "forbidden" or filtered. T0547 267 :K 1dc1A 276 :K T0547 269 :INLGGGL 1dc1A 278 :IFIGAAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=93154 # 2bw4A.267.172 read from T0547.t06.many.frag # found chain 2bw4A in training set T0547 267 :KAINLGGGL 2bw4A 173 :DKIYYVGEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=93155 # 1thfD.267.196 read from T0547.t06.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)N270 (1thfD)A200 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAI 1thfD 197 :PII T0547 271 :LGGGL 1thfD 201 :SGGAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=93157 # 1i4wA.267.60 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)A268 (1i4wA)V50 because E (beta_S) conformation "forbidden" or filtered. T0547 267 :K 1i4wA 49 :K T0547 269 :INLGGGL 1i4wA 51 :LDLYPGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=93159 # 2bzgA.267.133 read from T0547.t06.many.frag # found chain 2bzgA in template set T0547 267 :KAINLGGGL 2bzgA 147 :DMIWDRGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=93160 # 1uuyA.267.72 read from T0547.t06.many.frag # found chain 1uuyA in training set T0547 267 :KAINLGGGL 1uuyA 73 :DLILTLGGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=93161 # 2etvA.267.177 read from T0547.t06.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)G274 (2etvA)I197 because P (beta_P) conformation "forbidden" or filtered. T0547 267 :KAINLGG 2etvA 190 :PTVYVGG T0547 275 :L 2etvA 198 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=93163 # 1qvzA.267.99 read from T0547.t06.many.frag # found chain 1qvzA in template set Warning: unaligning (T0547)N270 (1qvzA)M103 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1qvzA)A106 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :KAI 1qvzA 100 :QIF T0547 271 :LG 1qvzA 104 :AS T0547 274 :GL 1qvzA 107 :GH Number of specific fragments extracted= 3 number of extra gaps= 2 total=93166 # 1zwxA.267.187 read from T0547.t06.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G274 (1zwxA)D229 because N (gamma') conformation "forbidden" or filtered. T0547 267 :KAINLGG 1zwxA 222 :EIIFIGG T0547 275 :L 1zwxA 230 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=93168 # 1esc.267.179 read from T0547.t06.many.frag # found chain 1esc in template set Warning: unaligning (T0547)K267 (1esc)K180 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AINLGGGL 1esc 181 :RVLVGYPR Number of specific fragments extracted= 1 number of extra gaps= 1 total=93169 # 1t0bA.267.98 read from T0547.t06.many.frag # found chain 1t0bA in training set T0547 267 :KAINLGGGL 1t0bA 96 :GLIVLHSGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=93170 # 1fobA.267.240 read from T0547.t06.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)G273 (1fobA)T247 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :KAINLG 1fobA 241 :PVVVVE T0547 274 :GL 1fobA 248 :NW Number of specific fragments extracted= 2 number of extra gaps= 1 total=93172 # 1kicA.267.170 read from T0547.t06.many.frag # found chain 1kicA in training set Warning: unaligning (T0547)G273 (1kicA)G165 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :KAINLG 1kicA 159 :EECVIM T0547 274 :GL 1kicA 166 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=93174 # 1zedA.267.196 read from T0547.t06.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)L271 (1zedA)G201 because Y (epsilon') conformation "forbidden" or filtered. T0547 267 :KAIN 1zedA 197 :DVIL T0547 272 :GGGL 1zedA 202 :GGRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=93176 # 1uz5A.267.247 read from T0547.t06.many.frag # found chain 1uz5A in template set Warning: unaligning (T0547)G274 (1uz5A)G255 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1uz5A)D262 T0547 267 :KAINLGG 1uz5A 248 :DVVVISG Number of specific fragments extracted= 1 number of extra gaps= 1 total=93177 # 7odcA.268.230 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 268 :AINLGGGLA 7odcA 231 :LLDIGGGFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=93178 # 1knwA.268.220 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A268 (1knwA)A221 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1knwA)G226 because Y (epsilon') conformation "forbidden" or filtered. T0547 269 :INLG 1knwA 222 :ISAG T0547 274 :GLA 1knwA 227 :GLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=93180 # 1xqwA.268.123 read from T0547.t06.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)A268 (1xqwA)G124 because Y (epsilon') conformation "forbidden" or filtered. T0547 269 :INLGGGLA 1xqwA 125 :LIVSGGLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=93181 # 1xrjA.268.21 read from T0547.t06.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)G272 (1xrjA)S26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1xrjA)G28 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AINL 1xrjA 22 :LIGV T0547 273 :G 1xrjA 27 :G T0547 275 :LA 1xrjA 29 :TA Number of specific fragments extracted= 3 number of extra gaps= 2 total=93184 # 1woyA.268.282 read from T0547.t06.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)G272 (1woyA)G287 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1woyA)F289 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AINL 1woyA 283 :HLNV T0547 273 :G 1woyA 288 :G T0547 275 :LA 1woyA 290 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=93187 # 1rtqA.268.90 read from T0547.t06.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)A268 (1rtqA)W91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1rtqA)G95 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1rtqA)H97 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :INL 1rtqA 92 :IVI T0547 273 :G 1rtqA 96 :G T0547 275 :LA 1rtqA 98 :LD Number of specific fragments extracted= 3 number of extra gaps= 3 total=93190 # 1nw3A.268.158 read from T0547.t06.many.frag # found chain 1nw3A in template set Warning: unaligning (T0547)A276 (1nw3A)G167 because T (delta_L) conformation "forbidden" or filtered. T0547 268 :AINLGGGL 1nw3A 159 :FVDLGSGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=93191 # 1zz1A.268.259 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G273 (1zz1A)S265 because N (gamma') conformation "forbidden" or filtered. T0547 268 :AINLG 1zz1A 260 :LIIVG T0547 274 :GLA 1zz1A 266 :GFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=93193 # 1mj5A.268.264 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)N270 (1mj5A)T267 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1mj5A)A269 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1mj5A)G270 because Y (epsilon') conformation "forbidden" or filtered. T0547 268 :AI 1mj5A 265 :EI T0547 271 :L 1mj5A 268 :V T0547 274 :GLA 1mj5A 271 :AHF Number of specific fragments extracted= 3 number of extra gaps= 2 total=93196 # 1nrzA.268.100 read from T0547.t06.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)N270 (1nrzA)N104 because P (beta_P) conformation "forbidden" or filtered. T0547 268 :AI 1nrzA 102 :TL T0547 271 :LGGGLA 1nrzA 105 :IGGMAW Number of specific fragments extracted= 2 number of extra gaps= 1 total=93198 # 1uteA.268.179 read from T0547.t06.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)G273 (1uteA)G185 because Y (epsilon') conformation "forbidden" or filtered. T0547 268 :AINLG 1uteA 180 :YVLVA T0547 274 :GLA 1uteA 186 :HYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=93200 # 1jg1A.268.94 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)A276 (1jg1A)G103 because T (delta_L) conformation "forbidden" or filtered. T0547 268 :AINLGGGL 1jg1A 95 :ILEVGTGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=93201 # 1i4wA.268.61 read from T0547.t06.many.frag # found chain 1i4wA in template set T0547 268 :AINLGGGLA 1i4wA 50 :VLDLYPGVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93202 # 1zwxA.268.188 read from T0547.t06.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G273 (1zwxA)G228 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1zwxA)D229 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. T0547 268 :AINLG 1zwxA 223 :IIFIG T0547 275 :L 1zwxA 230 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=93204 # 1fobA.268.129 read from T0547.t06.many.frag # found chain 1fobA in training set T0547 268 :AINLGGGLA 1fobA 130 :IISIGNEIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=93205 # 2bw4A.268.173 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)G272 (2bw4A)V178 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (2bw4A)G179 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (2bw4A)E180 because E (beta_S) conformation "forbidden" or filtered. T0547 268 :AINL 2bw4A 174 :KIYY T0547 275 :LA 2bw4A 181 :QD Number of specific fragments extracted= 2 number of extra gaps= 1 total=93207 # 1zkdA.268.83 read from T0547.t06.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)A268 (1zkdA)L84 because N (gamma') conformation "forbidden" or filtered. T0547 269 :INLGGGLA 1zkdA 85 :IEIGPGRG Number of specific fragments extracted= 1 number of extra gaps= 1 total=93208 # 1pcxA.268.325 read from T0547.t06.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)G274 (1pcxA)T448 because E (beta_S) conformation "forbidden" or filtered. T0547 268 :AINLGG 1pcxA 442 :IIVVSG T0547 275 :LA 1pcxA 449 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=93210 # 1kicA.268.171 read from T0547.t06.many.frag # found chain 1kicA in training set Warning: unaligning (T0547)A268 (1kicA)E160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1kicA)M164 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :INL 1kicA 161 :CVI T0547 273 :GGLA 1kicA 165 :GGAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=93212 # 2etvA.268.178 read from T0547.t06.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)G272 (2etvA)G195 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)G201 T0547 268 :AINL 2etvA 191 :TVYV T0547 273 :GGL 2etvA 196 :GIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=93214 # 1dc1A.268.276 read from T0547.t06.many.frag # found chain 1dc1A in training set Warning: unaligning (T0547)A268 (1dc1A)T277 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1dc1A)E285 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :INLGGGL 1dc1A 278 :IFIGAAI Number of specific fragments extracted= 1 number of extra gaps= 2 total=93215 # 1t0bA.268.99 read from T0547.t06.many.frag # found chain 1t0bA in training set T0547 268 :AINLGGGLA 1t0bA 97 :LIVLHSGHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=93216 # 1uuyA.268.73 read from T0547.t06.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)A268 (1uuyA)L74 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :INLGGGLA 1uuyA 75 :ILTLGGTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=93217 # 2ab0A.268.68 read from T0547.t06.many.frag # found chain 2ab0A in training set T0547 268 :AINLGGGLA 2ab0A 69 :VIVLPGGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=93218 # 1fobA.268.241 read from T0547.t06.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)G272 (1fobA)E246 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1fobA)T247 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1fobA)N248 because Y (epsilon') conformation "forbidden" or filtered. T0547 268 :AINL 1fobA 242 :VVVV T0547 275 :LA 1fobA 249 :WP Number of specific fragments extracted= 2 number of extra gaps= 1 total=93220 # 1qvzA.268.100 read from T0547.t06.many.frag # found chain 1qvzA in template set T0547 268 :AINLGGGLA 1qvzA 101 :IFMASAGHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93221 # 1thfD.268.197 read from T0547.t06.many.frag # found chain 1thfD in training set Warning: unaligning (T0547)A276 (1thfD)K206 because Y (epsilon') conformation "forbidden" or filtered. T0547 268 :AINLGGGL 1thfD 198 :IIASGGAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=93222 # 1zedA.268.197 read from T0547.t06.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)A268 (1zedA)V198 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L271 (1zedA)G201 because Y (epsilon') conformation "forbidden" or filtered. T0547 269 :IN 1zedA 199 :IL T0547 272 :GGGLA 1zedA 202 :GGRKY Number of specific fragments extracted= 2 number of extra gaps= 2 total=93224 # 1p3dA.268.119 read from T0547.t06.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)N270 (1p3dA)A122 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1p3dA)G125 because S (epsilon) conformation "forbidden" or filtered. T0547 268 :AI 1p3dA 120 :GI T0547 271 :LG 1p3dA 123 :VA T0547 274 :GLA 1p3dA 126 :THG Number of specific fragments extracted= 3 number of extra gaps= 2 total=93227 # 1ga6A.268.162 read from T0547.t06.many.frag # found chain 1ga6A in training set T0547 268 :AINLGGGLA 1ga6A 163 :TFSVSSGDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=93228 # 1knwA.269.221 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G272 (1knwA)G225 because S (epsilon) conformation "forbidden" or filtered. T0547 269 :INL 1knwA 222 :ISA T0547 273 :GGLAV 1knwA 226 :GGLSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=93230 # 7odcA.269.231 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 269 :INLGGGLAV 7odcA 232 :LDIGGGFPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93231 # 1xrjA.269.22 read from T0547.t06.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)N270 (1xrjA)G24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1xrjA)S26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1xrjA)A30 because L (left) conformation "forbidden" or filtered. T0547 269 :I 1xrjA 23 :I T0547 271 :L 1xrjA 25 :V T0547 273 :GGL 1xrjA 27 :GGT T0547 277 :V 1xrjA 31 :S Number of specific fragments extracted= 4 number of extra gaps= 3 total=93235 # 1xqwA.269.124 read from T0547.t06.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)G272 (1xqwA)S128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1xqwA)G130 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :INL 1xqwA 125 :LIV T0547 273 :G 1xqwA 129 :G T0547 275 :LAV 1xqwA 131 :LSS Number of specific fragments extracted= 3 number of extra gaps= 2 total=93238 # 1rtqA.269.91 read from T0547.t06.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)N270 (1rtqA)V93 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1rtqA)H97 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :I 1rtqA 92 :I T0547 271 :LGG 1rtqA 94 :IGG T0547 275 :LAV 1rtqA 98 :LDS Number of specific fragments extracted= 3 number of extra gaps= 2 total=93241 # 1zz1A.269.260 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G273 (1zz1A)S265 because N (gamma') conformation "forbidden" or filtered. T0547 269 :INLG 1zz1A 261 :IIVG T0547 274 :GLAV 1zz1A 266 :GFDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=93243 # 1zwxA.269.189 read from T0547.t06.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. T0547 269 :INLGGGL 1zwxA 224 :IFIGGDL T0547 277 :V 1zwxA 232 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=93245 # 1mj5A.269.265 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)G272 (1mj5A)A269 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :INL 1mj5A 266 :ITV T0547 273 :GGLAV 1mj5A 270 :GAHFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=93247 # 1woyA.269.283 read from T0547.t06.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)N270 (1woyA)N285 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1woyA)G288 because P (beta_P) conformation "forbidden" or filtered. T0547 269 :I 1woyA 284 :L T0547 271 :LG 1woyA 286 :VG T0547 274 :GLAV 1woyA 289 :FLLG Number of specific fragments extracted= 3 number of extra gaps= 2 total=93250 # 1nw3A.269.159 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 269 :INLGGGLAV 1nw3A 160 :VDLGSGVGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=93251 # 1uteA.269.180 read from T0547.t06.many.frag # found chain 1uteA in training set T0547 269 :INLGGGLAV 1uteA 181 :VLVAGHYPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=93252 # 1jg1A.269.95 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)G274 (1jg1A)G101 because S (epsilon) conformation "forbidden" or filtered. T0547 269 :INLGG 1jg1A 96 :LEVGT T0547 275 :LAV 1jg1A 102 :SGW Number of specific fragments extracted= 2 number of extra gaps= 1 total=93254 # 1pcxA.269.326 read from T0547.t06.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)G274 (1pcxA)T448 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :INLGG 1pcxA 443 :IVVSG T0547 275 :LAV 1pcxA 449 :LPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=93256 # 1fobA.269.242 read from T0547.t06.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)G274 (1fobA)N248 because Y (epsilon') conformation "forbidden" or filtered. T0547 269 :INLGG 1fobA 243 :VVVET T0547 275 :LAV 1fobA 249 :WPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=93258 # 1i4wA.269.62 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)A276 (1i4wA)G58 because L (left) conformation "forbidden" or filtered. T0547 269 :INLGGGL 1i4wA 51 :LDLYPGV T0547 277 :V 1i4wA 59 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=93260 # 1nrzA.269.101 read from T0547.t06.many.frag # found chain 1nrzA in training set Warning: unaligning (T0547)G272 (1nrzA)G106 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1nrzA)M108 because D (zeta) conformation "forbidden" or filtered. T0547 269 :INL 1nrzA 103 :LNI T0547 273 :G 1nrzA 107 :G T0547 275 :LAV 1nrzA 109 :AWR Number of specific fragments extracted= 3 number of extra gaps= 2 total=93263 # 2bw4A.269.174 read from T0547.t06.many.frag # found chain 2bw4A in training set T0547 269 :INLGGGLAV 2bw4A 175 :IYYVGEQDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=93264 # 1zedA.269.197 read from T0547.t06.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)G272 (1zedA)G201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1zedA)Y206 because G (3-10) conformation "forbidden" or filtered. T0547 269 :INL 1zedA 198 :VIL T0547 273 :GGLA 1zedA 202 :GGRK Number of specific fragments extracted= 2 number of extra gaps= 2 total=93266 # 1p3dA.269.120 read from T0547.t06.many.frag # found chain 1p3dA in training set T0547 269 :INLGGGLAV 1p3dA 121 :IAVAGTHGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=93267 # 1kicA.269.172 read from T0547.t06.many.frag # found chain 1kicA in training set Warning: unaligning (T0547)G273 (1kicA)G165 because Y (epsilon') conformation "forbidden" or filtered. T0547 269 :INLG 1kicA 161 :CVIM T0547 274 :GLAV 1kicA 166 :GAVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=93269 # 1ga6A.269.163 read from T0547.t06.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)G272 (1ga6A)S167 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1ga6A)G172 because S (epsilon) conformation "forbidden" or filtered. T0547 269 :INL 1ga6A 164 :FSV T0547 273 :GGLA 1ga6A 168 :SGDE Number of specific fragments extracted= 2 number of extra gaps= 2 total=93271 # 1l6rA.269.65 read from T0547.t06.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)L271 (1l6rA)E65 because L (left) conformation "forbidden" or filtered. T0547 269 :IN 1l6rA 63 :FG T0547 272 :GGGLAV 1l6rA 66 :NGGIMF Number of specific fragments extracted= 2 number of extra gaps= 1 total=93273 # 1qvzA.269.101 read from T0547.t06.many.frag # found chain 1qvzA in template set Warning: unaligning (T0547)G272 (1qvzA)S105 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1qvzA)A106 because Y (epsilon') conformation "forbidden" or filtered. T0547 269 :INL 1qvzA 102 :FMA T0547 274 :GLAV 1qvzA 107 :GHGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=93275 # 1m5wA.269.188 read from T0547.t06.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)L271 (1m5wA)A191 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1m5wA)T196 because Y (epsilon') conformation "forbidden" or filtered. T0547 269 :IN 1m5wA 189 :VN T0547 272 :GGGL 1m5wA 192 :GHGL T0547 277 :V 1m5wA 197 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=93278 # 1fcdA.269.5 read from T0547.t06.many.frag # found chain 1fcdA in template set T0547 269 :INLGGGLAV 1fcdA 6 :VVVGGGTGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93279 # 2etvA.269.179 read from T0547.t06.many.frag # found chain 2etvA in training set Warning: unaligning (T0547)G274 (2etvA)I197 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2etvA)G201 T0547 269 :INLGG 2etvA 192 :VYVGG T0547 275 :L 2etvA 198 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=93281 # 1zkdA.269.84 read from T0547.t06.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)G274 (1zkdA)G90 because S (epsilon) conformation "forbidden" or filtered. T0547 269 :INLGG 1zkdA 85 :IEIGP T0547 275 :LAV 1zkdA 91 :RGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=93283 # 1zzmA.269.175 read from T0547.t06.many.frag # found chain 1zzmA in training set T0547 269 :INLGGGLAV 1zzmA 176 :IGVGGTITY Number of specific fragments extracted= 1 number of extra gaps= 0 total=93284 # 1fobA.269.130 read from T0547.t06.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)G273 (1fobA)N135 because E (beta_S) conformation "forbidden" or filtered. T0547 269 :INLG 1fobA 131 :ISIG T0547 274 :GLAV 1fobA 136 :EIRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=93286 # 1zedA.269.198 read from T0547.t06.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)V277 (1zedA)M207 because G (3-10) conformation "forbidden" or filtered. T0547 269 :INLGGGLA 1zedA 199 :ILGGGRKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=93287 # 1knwA.270.222 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 270 :NLGGGLAVE 1knwA 223 :SAGGGLSVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=93288 # 7odcA.270.232 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 270 :NLGGGLAVE 7odcA 233 :DIGGGFPGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=93289 # 1zwxA.270.190 read from T0547.t06.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G273 (1zwxA)G228 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1zwxA)D229 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1zwxA)N233 because P (beta_P) conformation "forbidden" or filtered. T0547 270 :NLG 1zwxA 225 :FIG T0547 275 :LAV 1zwxA 230 :LNV Number of specific fragments extracted= 2 number of extra gaps= 2 total=93291 # 1xrjA.270.23 read from T0547.t06.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)N270 (1xrjA)G24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1xrjA)S26 because Y (epsilon') conformation "forbidden" or filtered. T0547 271 :L 1xrjA 25 :V T0547 273 :GGLAVE 1xrjA 27 :GGTASG Number of specific fragments extracted= 2 number of extra gaps= 2 total=93293 # 1xqwA.270.125 read from T0547.t06.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)L275 (1xqwA)L131 because Y (epsilon') conformation "forbidden" or filtered. T0547 270 :NLGGG 1xqwA 126 :IVSGG T0547 276 :AVE 1xqwA 132 :SSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=93295 # 1zz1A.270.261 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G274 (1zz1A)G266 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1zz1A)S270 because P (beta_P) conformation "forbidden" or filtered. T0547 270 :NLGG 1zz1A 262 :IVGS T0547 275 :LAV 1zz1A 267 :FDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=93297 # 1rtqA.270.92 read from T0547.t06.many.frag # found chain 1rtqA in training set T0547 270 :NLGGGLAVE 1rtqA 93 :VIGGHLDST Number of specific fragments extracted= 1 number of extra gaps= 0 total=93298 # 1pcxA.270.327 read from T0547.t06.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)G274 (1pcxA)T448 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1pcxA)N451 because G (3-10) conformation "forbidden" or filtered. T0547 270 :NLGG 1pcxA 444 :VVSG T0547 275 :LA 1pcxA 449 :LP T0547 278 :E 1pcxA 452 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=93301 # 1fobA.270.243 read from T0547.t06.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)G273 (1fobA)T247 because Y (epsilon') conformation "forbidden" or filtered. T0547 270 :NLG 1fobA 244 :VVE T0547 274 :GLAVE 1fobA 248 :NWPVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=93303 # 1l6rA.270.66 read from T0547.t06.many.frag # found chain 1l6rA in training set T0547 270 :NLGGGLAVE 1l6rA 64 :GENGGIMFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=93304 # 1uteA.270.181 read from T0547.t06.many.frag # found chain 1uteA in training set T0547 270 :NLGGGLAVE 1uteA 182 :LVAGHYPVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=93305 # 1mj5A.270.266 read from T0547.t06.many.frag # found chain 1mj5A in training set Warning: unaligning (T0547)N270 (1mj5A)T267 because E (beta_S) conformation "forbidden" or filtered. T0547 271 :LGGGLAVE 1mj5A 268 :VAGAHFIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=93306 # 1ga6A.270.164 read from T0547.t06.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)G272 (1ga6A)S167 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1ga6A)G172 because S (epsilon) conformation "forbidden" or filtered. T0547 270 :NL 1ga6A 165 :SV T0547 273 :GGLA 1ga6A 168 :SGDE T0547 278 :E 1ga6A 173 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=93309 # 1m5wA.270.189 read from T0547.t06.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)L271 (1m5wA)A191 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1m5wA)T196 because Y (epsilon') conformation "forbidden" or filtered. T0547 270 :N 1m5wA 190 :N T0547 272 :GGGL 1m5wA 192 :GHGL T0547 277 :VE 1m5wA 197 :YH Number of specific fragments extracted= 3 number of extra gaps= 2 total=93312 # 1woyA.270.284 read from T0547.t06.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)N270 (1woyA)N285 because D (zeta) conformation "forbidden" or filtered. T0547 271 :LGGGLAVE 1woyA 286 :VGGFLLGP Number of specific fragments extracted= 1 number of extra gaps= 1 total=93313 # 1nw3A.270.160 read from T0547.t06.many.frag # found chain 1nw3A in template set Warning: unaligning (T0547)A276 (1nw3A)G167 because T (delta_L) conformation "forbidden" or filtered. T0547 270 :NLGGGL 1nw3A 161 :DLGSGV T0547 277 :VE 1nw3A 168 :QV Number of specific fragments extracted= 2 number of extra gaps= 1 total=93315 # 2bw4A.270.175 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)G272 (2bw4A)V178 because N (gamma') conformation "forbidden" or filtered. T0547 270 :NL 2bw4A 176 :YY T0547 273 :GGLAVE 2bw4A 179 :GEQDFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=93317 # 1jykA.270.29 read from T0547.t06.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)G272 (1jykA)A12 because G (3-10) conformation "forbidden" or filtered. T0547 270 :NL 1jykA 10 :IL T0547 273 :GGLAVE 1jykA 13 :AGLGTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=93319 # 1zzmA.270.176 read from T0547.t06.many.frag # found chain 1zzmA in training set T0547 270 :NLGGGLAVE 1zzmA 177 :GVGGTITYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=93320 # 1jg1A.270.96 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)G274 (1jg1A)G101 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1jg1A)G103 because T (delta_L) conformation "forbidden" or filtered. T0547 270 :NLGG 1jg1A 97 :EVGT T0547 275 :L 1jg1A 102 :S T0547 277 :VE 1jg1A 104 :WN Number of specific fragments extracted= 3 number of extra gaps= 2 total=93323 # 1kicA.270.173 read from T0547.t06.many.frag # found chain 1kicA in training set T0547 270 :NLGGGLAVE 1kicA 162 :VIMGGAVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=93324 # 1qvzA.270.102 read from T0547.t06.many.frag # found chain 1qvzA in template set Warning: unaligning (T0547)G272 (1qvzA)S105 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1qvzA)A106 because Y (epsilon') conformation "forbidden" or filtered. T0547 270 :NL 1qvzA 103 :MA T0547 274 :GLAVE 1qvzA 107 :GHGTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=93326 # 1zedA.270.198 read from T0547.t06.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)G273 (1zedA)G202 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1zedA)Y206 because G (3-10) conformation "forbidden" or filtered. T0547 270 :NLG 1zedA 199 :ILG T0547 274 :GLA 1zedA 203 :GRK T0547 278 :E 1zedA 207 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=93329 # 1i4wA.270.63 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)G274 (1i4wA)G56 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1i4wA)G58 because L (left) conformation "forbidden" or filtered. T0547 270 :NLGG 1i4wA 52 :DLYP T0547 275 :L 1i4wA 57 :V T0547 277 :VE 1i4wA 59 :IQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=93332 # 1uuyA.270.75 read from T0547.t06.many.frag # found chain 1uuyA in training set Warning: unaligning (T0547)G273 (1uuyA)G79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1uuyA)F83 because G (3-10) conformation "forbidden" or filtered. T0547 270 :NLG 1uuyA 76 :LTL T0547 274 :GLA 1uuyA 80 :GTG T0547 278 :E 1uuyA 84 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=93335 # 2c5aA.270.141 read from T0547.t06.many.frag # found chain 2c5aA in training set T0547 270 :NLGGGLAVE 2c5aA 140 :YASSACIYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=93336 # 1u7gA.270.159 read from T0547.t06.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)V277 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)H168 Warning: unaligning (T0547)E278 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)H168 T0547 270 :NLGGGLA 1u7gA 160 :DFAGGTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=93337 # 1ro7A.270.148 read from T0547.t06.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)G274 (1ro7A)I153 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1ro7A)F155 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1ro7A)Y156 because L (left) conformation "forbidden" or filtered. T0547 270 :NLGG 1ro7A 149 :YLSG T0547 275 :L 1ro7A 154 :D T0547 278 :E 1ro7A 157 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=93340 # 2f6kA.270.151 read from T0547.t06.many.frag # found chain 2f6kA in template set Warning: unaligning (T0547)G272 (2f6kA)H154 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (2f6kA)I160 because E (beta_S) conformation "forbidden" or filtered. T0547 270 :NL 2f6kA 152 :AL T0547 273 :GGLAV 2f6kA 155 :PNEPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=93342 # 1fcdA.270.100 read from T0547.t06.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)N270 (1fcdA)V101 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G272 (1fcdA)A103 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1fcdA)G105 because S (epsilon) conformation "forbidden" or filtered. T0547 271 :L 1fcdA 102 :V T0547 273 :G 1fcdA 104 :P T0547 275 :LAVE 1fcdA 106 :IELI Number of specific fragments extracted= 3 number of extra gaps= 3 total=93345 # 1knwA.271.223 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G272 (1knwA)G225 because S (epsilon) conformation "forbidden" or filtered. T0547 271 :L 1knwA 224 :A T0547 273 :GGLAVEY 1knwA 226 :GGLSVPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=93347 # 1zwxA.271.191 read from T0547.t06.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G274 (1zwxA)D229 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1zwxA)N233 because P (beta_P) conformation "forbidden" or filtered. T0547 271 :LGG 1zwxA 226 :IGG T0547 275 :LAV 1zwxA 230 :LNV T0547 279 :Y 1zwxA 234 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=93350 # 7odcA.271.233 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 271 :LGGGLAVEY 7odcA 234 :IGGGFPGSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=93351 # 1fobA.271.244 read from T0547.t06.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)G274 (1fobA)N248 because Y (epsilon') conformation "forbidden" or filtered. T0547 271 :LGG 1fobA 245 :VET T0547 275 :LAVEY 1fobA 249 :WPVSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=93353 # 1zz1A.271.262 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G273 (1zz1A)S265 because N (gamma') conformation "forbidden" or filtered. T0547 271 :LG 1zz1A 263 :VG T0547 274 :GLAVEY 1zz1A 266 :GFDASM Number of specific fragments extracted= 2 number of extra gaps= 1 total=93355 # 1l6rA.271.67 read from T0547.t06.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)L271 (1l6rA)E65 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1l6rA)D72 because P (beta_P) conformation "forbidden" or filtered. T0547 272 :GGGLAV 1l6rA 66 :NGGIMF T0547 279 :Y 1l6rA 73 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=93357 # 1xqwA.271.126 read from T0547.t06.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)G274 (1xqwA)G130 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1xqwA)L131 because Y (epsilon') conformation "forbidden" or filtered. T0547 271 :LGG 1xqwA 127 :VSG T0547 276 :AVEY 1xqwA 132 :SSVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=93359 # 1xrjA.271.24 read from T0547.t06.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)G272 (1xrjA)S26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1xrjA)A30 because L (left) conformation "forbidden" or filtered. T0547 271 :L 1xrjA 25 :V T0547 273 :GGL 1xrjA 27 :GGT T0547 277 :VEY 1xrjA 31 :SGK Number of specific fragments extracted= 3 number of extra gaps= 2 total=93362 # 1wpoA.271.14 read from T0547.t06.many.frag # found chain 1wpoA in template set T0547 271 :LGGGLAVEY 1wpoA 15 :YVGGFLARY Number of specific fragments extracted= 1 number of extra gaps= 0 total=93363 # 1pcxA.271.328 read from T0547.t06.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)G273 (1pcxA)G447 because G (3-10) conformation "forbidden" or filtered. T0547 271 :LG 1pcxA 445 :VS T0547 274 :GLAVEY 1pcxA 448 :TLPNLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=93365 # 1rtqA.271.93 read from T0547.t06.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)G272 (1rtqA)G95 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1rtqA)G96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1rtqA)T101 because Y (epsilon') conformation "forbidden" or filtered. T0547 271 :L 1rtqA 94 :I T0547 274 :GLAV 1rtqA 97 :HLDS T0547 279 :Y 1rtqA 102 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=93368 # 1ga6A.271.165 read from T0547.t06.many.frag # found chain 1ga6A in training set T0547 271 :LGGGLAVEY 1ga6A 166 :VSSGDEGVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=93369 # 1uteA.271.182 read from T0547.t06.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)G272 (1uteA)A184 because E (beta_S) conformation "forbidden" or filtered. T0547 271 :L 1uteA 183 :V T0547 273 :GGLAVEY 1uteA 185 :GHYPVWS Number of specific fragments extracted= 2 number of extra gaps= 1 total=93371 # 1jykA.271.30 read from T0547.t06.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)G272 (1jykA)A12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1jykA)G14 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1jykA)G16 because L (left) conformation "forbidden" or filtered. T0547 271 :L 1jykA 11 :L T0547 273 :G 1jykA 13 :A T0547 275 :L 1jykA 15 :L T0547 277 :VEY 1jykA 17 :TRL Number of specific fragments extracted= 4 number of extra gaps= 3 total=93375 # 2bw4A.271.176 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)E278 (2bw4A)Y184 because D (zeta) conformation "forbidden" or filtered. T0547 271 :LGGGLAV 2bw4A 177 :YVGEQDF T0547 279 :Y 2bw4A 185 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=93377 # 1z90A.271.254 read from T0547.t06.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)A276 (1z90A)L260 because P (beta_P) conformation "forbidden" or filtered. T0547 271 :LGGGL 1z90A 255 :VKGGT T0547 277 :VEY 1z90A 261 :ISY Number of specific fragments extracted= 2 number of extra gaps= 1 total=93379 # 1mj5A.271.267 read from T0547.t06.many.frag # found chain 1mj5A in training set T0547 271 :LGGGLAVEY 1mj5A 268 :VAGAHFIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=93380 # 1m5wA.271.190 read from T0547.t06.many.frag # found chain 1m5wA in template set Warning: unaligning (T0547)L271 (1m5wA)A191 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1m5wA)T196 because Y (epsilon') conformation "forbidden" or filtered. T0547 272 :GGGL 1m5wA 192 :GHGL T0547 277 :VEY 1m5wA 197 :YHN Number of specific fragments extracted= 2 number of extra gaps= 2 total=93382 # 1r8gA.271.94 read from T0547.t06.many.frag # found chain 1r8gA in template set Warning: unaligning (T0547)L271 (1r8gA)C95 because Y (epsilon') conformation "forbidden" or filtered. T0547 272 :GGGLAVEY 1r8gA 96 :GGGTHPFQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=93383 # 1nw3A.271.161 read from T0547.t06.many.frag # found chain 1nw3A in template set Warning: unaligning (T0547)G274 (1nw3A)G165 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1nw3A)G167 because T (delta_L) conformation "forbidden" or filtered. T0547 271 :LGG 1nw3A 162 :LGS T0547 275 :L 1nw3A 166 :V T0547 277 :VEY 1nw3A 168 :QVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=93386 # 1qvzA.271.103 read from T0547.t06.many.frag # found chain 1qvzA in template set Warning: unaligning (T0547)G272 (1qvzA)S105 because P (beta_P) conformation "forbidden" or filtered. T0547 271 :L 1qvzA 104 :A T0547 273 :GGLAVEY 1qvzA 106 :AGHGTLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=93388 # 1jg1A.271.97 read from T0547.t06.many.frag # found chain 1jg1A in training set T0547 271 :LGGGLAVEY 1jg1A 98 :VGTGSGWNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=93389 # 1fcdA.271.101 read from T0547.t06.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)G272 (1fcdA)A103 because D (zeta) conformation "forbidden" or filtered. T0547 271 :L 1fcdA 102 :V T0547 273 :GGLAVEY 1fcdA 104 :PGIELIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=93391 # 1vkpA.271.161 read from T0547.t06.many.frag # found chain 1vkpA in training set T0547 271 :LGGGLAVEY 1vkpA 162 :EGGSIHVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93392 # 1w5qA.271.201 read from T0547.t06.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)A276 because of BadResidue code BAD_PEPTIDE in next template residue (1w5qA)S208 Warning: unaligning (T0547)V277 because of BadResidue code BAD_PEPTIDE at template residue (1w5qA)S208 T0547 271 :LGGGL 1w5qA 202 :YSAKY T0547 278 :EY 1w5qA 209 :AY Number of specific fragments extracted= 2 number of extra gaps= 1 total=93394 # 1i4wA.271.64 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)A276 (1i4wA)G58 because L (left) conformation "forbidden" or filtered. T0547 271 :LGGGL 1i4wA 53 :LYPGV T0547 277 :VEY 1i4wA 59 :IQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=93396 # 1u7gA.271.160 read from T0547.t06.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G272 (1u7gA)A162 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1u7gA)G164 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)H168 Warning: unaligning (T0547)E278 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)H168 T0547 271 :L 1u7gA 161 :F T0547 273 :G 1u7gA 163 :G T0547 275 :LA 1u7gA 165 :TV T0547 279 :Y 1u7gA 169 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=93400 # 2c5aA.271.142 read from T0547.t06.many.frag # found chain 2c5aA in training set Warning: unaligning (T0547)G272 (2c5aA)S142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (2c5aA)S143 because E (beta_S) conformation "forbidden" or filtered. T0547 271 :L 2c5aA 141 :A T0547 274 :GLAVEY 2c5aA 144 :ACIYPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=93402 # 1woyA.271.285 read from T0547.t06.many.frag # found chain 1woyA in template set Warning: unaligning (T0547)G274 (1woyA)F289 because P (beta_P) conformation "forbidden" or filtered. T0547 271 :LGG 1woyA 286 :VGG T0547 275 :LAVEY 1woyA 290 :LLGPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=93404 # 2a40B.271.164 read from T0547.t06.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)G274 (2a40B)D168 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (2a40B)N170 because L (left) conformation "forbidden" or filtered. T0547 271 :LGG 2a40B 165 :LMG T0547 275 :L 2a40B 169 :F T0547 277 :VEY 2a40B 171 :ADC Number of specific fragments extracted= 3 number of extra gaps= 2 total=93407 # 1knwA.272.224 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 272 :GGGLAVEYS 1knwA 225 :GGGLSVPYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=93408 # 1zwxA.272.192 read from T0547.t06.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1zwxA)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 272 :GGGL 1zwxA 227 :GGDL T0547 277 :VEY 1zwxA 232 :VNY Number of specific fragments extracted= 2 number of extra gaps= 2 total=93410 # 1fobA.272.245 read from T0547.t06.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)G272 (1fobA)E246 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (1fobA)T247 because Y (epsilon') conformation "forbidden" or filtered. T0547 274 :GLAVEYS 1fobA 248 :NWPVSCP Number of specific fragments extracted= 1 number of extra gaps= 1 total=93411 # 1wpoA.272.15 read from T0547.t06.many.frag # found chain 1wpoA in template set T0547 272 :GGGLAVEYS 1wpoA 16 :VGGFLARYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=93412 # 7odcA.272.234 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)V277 (7odcA)G240 because G (3-10) conformation "forbidden" or filtered. T0547 272 :GGGLA 7odcA 235 :GGGFP T0547 278 :EYS 7odcA 241 :SED Number of specific fragments extracted= 2 number of extra gaps= 1 total=93414 # 1zz1A.272.263 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)V277 (1zz1A)A269 because G (3-10) conformation "forbidden" or filtered. T0547 272 :GGGLA 1zz1A 264 :GSGFD T0547 278 :EYS 1zz1A 270 :SML Number of specific fragments extracted= 2 number of extra gaps= 1 total=93416 # 1l6rA.272.68 read from T0547.t06.many.frag # found chain 1l6rA in training set T0547 272 :GGGLAVEYS 1l6rA 66 :NGGIMFDND Number of specific fragments extracted= 1 number of extra gaps= 0 total=93417 # 2bw4A.272.177 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)G272 (2bw4A)V178 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G273 (2bw4A)G179 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (2bw4A)E180 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (2bw4A)P186 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :LAVEY 2bw4A 181 :QDFYV Number of specific fragments extracted= 1 number of extra gaps= 2 total=93418 # 1z90A.272.255 read from T0547.t06.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)S280 (1z90A)E264 because L (left) conformation "forbidden" or filtered. T0547 272 :GGGLAVEY 1z90A 256 :KGGTLISY Number of specific fragments extracted= 1 number of extra gaps= 1 total=93419 # 1rtqA.272.94 read from T0547.t06.many.frag # found chain 1rtqA in training set T0547 272 :GGGLAVEYS 1rtqA 95 :GGHLDSTIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93420 # 1jykA.272.31 read from T0547.t06.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)G272 (1jykA)A12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1jykA)G14 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1jykA)G16 because L (left) conformation "forbidden" or filtered. T0547 273 :G 1jykA 13 :A T0547 275 :L 1jykA 15 :L T0547 277 :VEYS 1jykA 17 :TRLR Number of specific fragments extracted= 3 number of extra gaps= 3 total=93423 # 1iu8A.272.158 read from T0547.t06.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)G272 (1iu8A)A159 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1iu8A)F161 because E (beta_S) conformation "forbidden" or filtered. T0547 273 :G 1iu8A 160 :G T0547 275 :LAVEYS 1iu8A 162 :IHVPYT Number of specific fragments extracted= 2 number of extra gaps= 2 total=93425 # 1ga6A.272.166 read from T0547.t06.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)V277 (1ga6A)G172 because S (epsilon) conformation "forbidden" or filtered. T0547 272 :GGGLA 1ga6A 167 :SSGDE T0547 278 :EYS 1ga6A 173 :VYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=93427 # 1r8gA.272.95 read from T0547.t06.many.frag # found chain 1r8gA in template set Warning: unaligning (T0547)G273 (1r8gA)G97 because S (epsilon) conformation "forbidden" or filtered. T0547 272 :G 1r8gA 96 :G T0547 274 :GLAVEYS 1r8gA 98 :GTHPFQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=93429 # 2a40B.272.165 read from T0547.t06.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)G272 (2a40B)M166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (2a40B)D168 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (2a40B)D172 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :G 2a40B 167 :G T0547 275 :LAV 2a40B 169 :FNA T0547 279 :YS 2a40B 173 :CS Number of specific fragments extracted= 3 number of extra gaps= 3 total=93432 # 1xqwA.272.127 read from T0547.t06.many.frag # found chain 1xqwA in template set Warning: unaligning (T0547)G274 (1xqwA)G130 because P (beta_P) conformation "forbidden" or filtered. T0547 272 :GG 1xqwA 128 :SG T0547 275 :LAVEYS 1xqwA 131 :LSSVPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=93434 # 1vkpA.272.162 read from T0547.t06.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)G274 (1vkpA)S165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (1vkpA)G170 because T (delta_L) conformation "forbidden" or filtered. T0547 272 :GG 1vkpA 163 :GG T0547 275 :LAVE 1vkpA 166 :IHVD T0547 280 :S 1vkpA 171 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=93437 # 1fcdA.272.102 read from T0547.t06.many.frag # found chain 1fcdA in template set Warning: unaligning (T0547)G272 (1fcdA)A103 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1fcdA)G105 because S (epsilon) conformation "forbidden" or filtered. T0547 273 :G 1fcdA 104 :P T0547 275 :LAVEYS 1fcdA 106 :IELIYD Number of specific fragments extracted= 2 number of extra gaps= 2 total=93439 # 1k2xB.272.95 read from T0547.t06.many.frag # found chain 1k2xB in training set Warning: unaligning (T0547)E278 (1k2xB)I280 because E (beta_S) conformation "forbidden" or filtered. T0547 272 :GGGLAV 1k2xB 274 :SGGLIA T0547 279 :YS 1k2xB 281 :DH Number of specific fragments extracted= 2 number of extra gaps= 1 total=93441 # 2c5aA.272.143 read from T0547.t06.many.frag # found chain 2c5aA in training set Warning: unaligning (T0547)G272 (2c5aA)S142 because P (beta_P) conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 2c5aA 143 :SACIYPEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=93442 # 1qvzA.272.104 read from T0547.t06.many.frag # found chain 1qvzA in template set T0547 272 :GGGLAVEYS 1qvzA 105 :SAGHGTLFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=93443 # 1vjoA.272.199 read from T0547.t06.many.frag # found chain 1vjoA in training set Warning: unaligning (T0547)G272 (1vjoA)L188 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1vjoA)G190 because G (3-10) conformation "forbidden" or filtered. T0547 273 :G 1vjoA 189 :G T0547 275 :LAVEYS 1vjoA 191 :VPIFLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=93445 # 1pcxA.272.329 read from T0547.t06.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)G272 (1pcxA)S446 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 1pcxA 447 :GTLPNLGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=93446 # 2bmaA.272.211 read from T0547.t06.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)G272 (2bmaA)G189 because N (gamma') conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 2bmaA 190 :TLTGKNVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=93447 # 1w5qA.272.202 read from T0547.t06.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)G274 (1w5qA)K205 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 because of BadResidue code BAD_PEPTIDE in next template residue (1w5qA)S208 Warning: unaligning (T0547)V277 because of BadResidue code BAD_PEPTIDE at template residue (1w5qA)S208 T0547 272 :GG 1w5qA 203 :SA T0547 275 :L 1w5qA 206 :Y T0547 278 :EYS 1w5qA 209 :AYY Number of specific fragments extracted= 3 number of extra gaps= 2 total=93450 # 1e19A.272.193 read from T0547.t06.many.frag # found chain 1e19A in training set T0547 272 :GGGLAVEYS 1e19A 194 :GGGVPVILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=93451 # 1uteA.272.183 read from T0547.t06.many.frag # found chain 1uteA in training set Warning: unaligning (T0547)G273 (1uteA)G185 because Y (epsilon') conformation "forbidden" or filtered. T0547 272 :G 1uteA 184 :A T0547 274 :GLAVEYS 1uteA 186 :HYPVWSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=93453 # 1odzA.272.280 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)A276 (1odzA)G322 because Y (epsilon') conformation "forbidden" or filtered. T0547 272 :GGGL 1odzA 318 :ISGI T0547 277 :VEYS 1odzA 323 :IRAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=93455 # 1u7zA.272.92 read from T0547.t06.many.frag # found chain 1u7zA in template set Warning: unaligning (T0547)G273 (1u7zA)C274 because G (3-10) conformation "forbidden" or filtered. T0547 272 :G 1u7zA 273 :G T0547 274 :GLAVEYS 1u7zA 275 :AAVADYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=93457 # 1jovA.272.69 read from T0547.t06.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)G272 (1jovA)R70 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1jovA)P78 because C (cis) conformation "forbidden" or filtered. T0547 273 :GGLAVEY 1jovA 71 :GGVPICY Number of specific fragments extracted= 1 number of extra gaps= 2 total=93458 # 1knwA.273.225 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 273 :GGLAVEYSQ 1knwA 226 :GGLSVPYQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=93459 # 1fobA.273.246 read from T0547.t06.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)G273 (1fobA)T247 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1fobA)N248 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1fobA)V251 because G (3-10) conformation "forbidden" or filtered. T0547 275 :LA 1fobA 249 :WP T0547 278 :EYSQ 1fobA 252 :SCPN Number of specific fragments extracted= 2 number of extra gaps= 2 total=93461 # 1wpoA.273.16 read from T0547.t06.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)Y279 (1wpoA)Y23 because G (3-10) conformation "forbidden" or filtered. T0547 273 :GGLAVE 1wpoA 17 :GGFLAR T0547 280 :SQ 1wpoA 24 :DQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=93463 # 1zwxA.273.193 read from T0547.t06.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)G274 (1zwxA)D229 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1zwxA)T236 because P (beta_P) conformation "forbidden" or filtered. T0547 273 :G 1zwxA 228 :G T0547 275 :L 1zwxA 230 :L T0547 277 :VEYS 1zwxA 232 :VNYG Number of specific fragments extracted= 3 number of extra gaps= 3 total=93466 # 1z90A.273.256 read from T0547.t06.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)G274 (1z90A)G258 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1z90A)S262 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1z90A)E264 because L (left) conformation "forbidden" or filtered. T0547 273 :G 1z90A 257 :G T0547 275 :LAV 1z90A 259 :TLI T0547 279 :Y 1z90A 263 :Y T0547 281 :Q 1z90A 265 :G Number of specific fragments extracted= 4 number of extra gaps= 3 total=93470 # 1l6rA.273.69 read from T0547.t06.many.frag # found chain 1l6rA in training set Warning: unaligning (T0547)Q281 (1l6rA)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 1l6rA 67 :GGIMFDND Number of specific fragments extracted= 1 number of extra gaps= 1 total=93471 # 1iu8A.273.159 read from T0547.t06.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)G274 (1iu8A)F161 because E (beta_S) conformation "forbidden" or filtered. T0547 273 :G 1iu8A 160 :G T0547 275 :LAVEYSQ 1iu8A 162 :IHVPYTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=93473 # 2bw4A.273.178 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)Q281 (2bw4A)K187 because E (beta_S) conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 2bw4A 179 :GEQDFYVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=93474 # 1jykA.273.32 read from T0547.t06.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)Q281 (1jykA)P21 because C (cis) conformation "forbidden" or filtered. T0547 273 :GGLAVEYS 1jykA 13 :AGLGTRLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=93475 # 1odzA.273.281 read from T0547.t06.many.frag # found chain 1odzA in training set Warning: unaligning (T0547)A276 (1odzA)G322 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :GGL 1odzA 319 :SGI T0547 277 :VEYSQ 1odzA 323 :IRAPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=93477 # 2fckA.273.70 read from T0547.t06.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)G273 (2fckA)Y68 because D (zeta) conformation "forbidden" or filtered. T0547 274 :GLAVEYSQ 2fckA 69 :GFGVFERQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=93478 # 1k2xB.273.96 read from T0547.t06.many.frag # found chain 1k2xB in training set Warning: unaligning (T0547)G273 (1k2xB)G275 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1k2xB)I278 because E (beta_S) conformation "forbidden" or filtered. T0547 274 :GL 1k2xB 276 :GL T0547 277 :VEYSQ 1k2xB 279 :AIDHE Number of specific fragments extracted= 2 number of extra gaps= 2 total=93480 # 1vkpA.273.163 read from T0547.t06.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)G273 (1vkpA)G164 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)G274 (1vkpA)S165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (1vkpA)G170 because T (delta_L) conformation "forbidden" or filtered. T0547 275 :LAVE 1vkpA 166 :IHVD T0547 280 :SQ 1vkpA 171 :EG Number of specific fragments extracted= 2 number of extra gaps= 2 total=93482 # 7odcA.273.235 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G273 (7odcA)G236 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (7odcA)S241 because E (beta_S) conformation "forbidden" or filtered. T0547 274 :GLAV 7odcA 237 :GFPG T0547 279 :YSQ 7odcA 242 :EDT Number of specific fragments extracted= 2 number of extra gaps= 2 total=93484 # 1rtqA.273.95 read from T0547.t06.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)E278 (1rtqA)T101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (1rtqA)I102 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1rtqA)G103 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 because of BadResidue code BAD_PEPTIDE in next template residue (1rtqA)H105 T0547 273 :GGLAV 1rtqA 96 :GHLDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=93485 # 1zavA.273.23 read from T0547.t06.many.frag # found chain 1zavA in template set Warning: unaligning (T0547)E278 (1zavA)D28 because P (beta_P) conformation "forbidden" or filtered. T0547 273 :GGLAV 1zavA 23 :LILFA T0547 279 :YSQ 1zavA 29 :FLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=93487 # 2a40B.273.166 read from T0547.t06.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)G273 (2a40B)G167 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (2a40B)N170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (2a40B)D172 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (2a40B)C173 because S (epsilon) conformation "forbidden" or filtered. T0547 274 :GL 2a40B 168 :DF T0547 277 :V 2a40B 171 :A T0547 280 :SQ 2a40B 174 :SY Number of specific fragments extracted= 3 number of extra gaps= 3 total=93490 # 1woqA.273.24 read from T0547.t06.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)L275 (1woqA)G27 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :GG 1woqA 25 :KG T0547 276 :AVEYSQ 1woqA 28 :IVDLKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=93492 # 2f8aA.273.83 read from T0547.t06.many.frag # found chain 2f8aA in training set T0547 273 :GGLAVEYSQ 2f8aA 72 :LGFPCNQFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93493 # 1fcdA.273.103 read from T0547.t06.many.frag # found chain 1fcdA in template set T0547 273 :GGLAVEYSQ 1fcdA 104 :PGIELIYDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=93494 # 2bmaA.273.212 read from T0547.t06.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)A276 (2bmaA)G193 because T (delta_L) conformation "forbidden" or filtered. T0547 273 :GGL 2bmaA 190 :TLT T0547 277 :VEYSQ 2bmaA 194 :KNVKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=93496 # 1tz9A.273.325 read from T0547.t06.many.frag # found chain 1tz9A in template set Warning: unaligning (T0547)G274 (1tz9A)D317 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1tz9A)G319 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1tz9A)W323 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1tz9A)D324 because L (left) conformation "forbidden" or filtered. T0547 273 :G 1tz9A 316 :P T0547 275 :L 1tz9A 318 :H T0547 277 :VEY 1tz9A 320 :RAI Number of specific fragments extracted= 3 number of extra gaps= 3 total=93499 # 1q6zA.273.234 read from T0547.t06.many.frag # found chain 1q6zA in training set Warning: unaligning (T0547)G273 (1q6zA)P235 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V277 (1q6zA)R239 because Y (epsilon') conformation "forbidden" or filtered. T0547 274 :GLA 1q6zA 236 :SAP T0547 278 :EYSQ 1q6zA 240 :CPFP Number of specific fragments extracted= 2 number of extra gaps= 2 total=93501 # 1hq0A.273.121 read from T0547.t06.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)E278 (1hq0A)A846 because P (beta_P) conformation "forbidden" or filtered. T0547 273 :GGLAV 1hq0A 841 :NGIKI T0547 279 :YSQ 1hq0A 847 :LEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=93503 # 1ej0A.273.129 read from T0547.t06.many.frag # found chain 1ej0A in training set T0547 273 :GGLAVEYSQ 1ej0A 159 :GSFVVKVFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=93504 # 1nuyA.273.133 read from T0547.t06.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)S280 because of BadResidue code BAD_PEPTIDE in next template residue (1nuyA)N1142 Warning: unaligning (T0547)Q281 because of BadResidue code BAD_PEPTIDE at template residue (1nuyA)N1142 T0547 273 :GGLAVEY 1nuyA 1134 :TIFGIYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=93505 # 1zz1A.273.264 read from T0547.t06.many.frag # found chain 1zz1A in training set Warning: unaligning (T0547)G273 (1zz1A)S265 because N (gamma') conformation "forbidden" or filtered. T0547 274 :GLAVEYSQ 1zz1A 266 :GFDASMLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=93506 # 1y4wA.273.83 read from T0547.t06.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)G274 (1y4wA)G104 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1y4wA)S105 because Y (epsilon') conformation "forbidden" or filtered. T0547 273 :G 1y4wA 103 :S T0547 276 :AVEYSQ 1y4wA 106 :AVADVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=93508 # 1w8kA.273.56 read from T0547.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)G273 (1w8kA)F97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1w8kA)G100 because Y (epsilon') conformation "forbidden" or filtered. T0547 274 :GL 1w8kA 98 :GK T0547 277 :VEYSQ 1w8kA 101 :IVIEN Number of specific fragments extracted= 2 number of extra gaps= 2 total=93510 # 1vjoA.273.200 read from T0547.t06.many.frag # found chain 1vjoA in training set T0547 273 :GGLAVEYSQ 1vjoA 189 :GGVPIFLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=93511 # 1knwA.274.226 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A276 (1knwA)S229 because P (beta_P) conformation "forbidden" or filtered. T0547 274 :GL 1knwA 227 :GL T0547 277 :VEYSQF 1knwA 230 :VPYQQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=93513 # 1fobA.274.247 read from T0547.t06.many.frag # found chain 1fobA in training set T0547 274 :GLAVEYSQF 1fobA 248 :NWPVSCPNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=93514 # 1wpoA.274.17 read from T0547.t06.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wpoA)L33 T0547 274 :GLAVEYSQ 1wpoA 18 :GFLARYDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=93515 # 1z90A.274.257 read from T0547.t06.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)G274 (1z90A)G258 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1z90A)L260 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1z90A)E264 because L (left) conformation "forbidden" or filtered. T0547 275 :L 1z90A 259 :T T0547 277 :VEY 1z90A 261 :ISY T0547 281 :QF 1z90A 265 :GK Number of specific fragments extracted= 3 number of extra gaps= 3 total=93518 # 1iu8A.274.160 read from T0547.t06.many.frag # found chain 1iu8A in training set T0547 274 :GLAVEYSQF 1iu8A 161 :FIHVPYTPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=93519 # 1zwxA.274.194 read from T0547.t06.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1zwxA)N233 because P (beta_P) conformation "forbidden" or filtered. T0547 274 :GL 1zwxA 229 :DL T0547 277 :V 1zwxA 232 :V T0547 279 :YSQF 1zwxA 234 :YGTD Number of specific fragments extracted= 3 number of extra gaps= 2 total=93522 # 1zavA.274.24 read from T0547.t06.many.frag # found chain 1zavA in template set Warning: unaligning (T0547)E278 (1zavA)D28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1zavA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 274 :GLAV 1zavA 24 :ILFA T0547 279 :YS 1zavA 29 :FL T0547 282 :F 1zavA 32 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=93525 # 2f8aA.274.84 read from T0547.t06.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)Q281 (2f8aA)G80 because L (left) conformation "forbidden" or filtered. T0547 274 :GLAVEYS 2f8aA 73 :GFPCNQF T0547 282 :F 2f8aA 81 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=93527 # 2fckA.274.71 read from T0547.t06.many.frag # found chain 2fckA in training set T0547 274 :GLAVEYSQF 2fckA 69 :GFGVFERQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=93528 # 2bw4A.274.179 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)G274 (2bw4A)E180 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (2bw4A)D182 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :L 2bw4A 181 :Q T0547 277 :VEYSQF 2bw4A 183 :FYVPKD Number of specific fragments extracted= 2 number of extra gaps= 2 total=93530 # 1odzA.274.282 read from T0547.t06.many.frag # found chain 1odzA in training set T0547 274 :GLAVEYSQF 1odzA 320 :GIGIRAPDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=93531 # 1l6rA.274.70 read from T0547.t06.many.frag # found chain 1l6rA in training set T0547 274 :GLAVEYSQF 1l6rA 68 :GIMFDNDGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=93532 # 1tz9A.274.326 read from T0547.t06.many.frag # found chain 1tz9A in template set Warning: unaligning (T0547)G274 (1tz9A)D317 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1tz9A)G319 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1tz9A)A321 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1tz9A)W323 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1tz9A)D324 because L (left) conformation "forbidden" or filtered. T0547 275 :L 1tz9A 318 :H T0547 277 :V 1tz9A 320 :R T0547 279 :Y 1tz9A 322 :I T0547 282 :F 1tz9A 325 :E Number of specific fragments extracted= 4 number of extra gaps= 4 total=93536 # 1w8kA.274.57 read from T0547.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)Q281 (1w8kA)N105 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1w8kA)S106 because Y (epsilon') conformation "forbidden" or filtered. T0547 274 :GLAVEYS 1w8kA 98 :GKGIVIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=93537 # 1hq0A.274.122 read from T0547.t06.many.frag # found chain 1hq0A in template set T0547 274 :GLAVEYSQF 1hq0A 842 :GIKIALEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=93538 # 1jykA.274.33 read from T0547.t06.many.frag # found chain 1jykA in training set Warning: unaligning (T0547)Q281 (1jykA)P21 because C (cis) conformation "forbidden" or filtered. T0547 274 :GLAVEYS 1jykA 14 :GLGTRLR T0547 282 :F 1jykA 22 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=93540 # 1woqA.274.25 read from T0547.t06.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)G274 (1woqA)G26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L275 (1woqA)G27 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1woqA)G34 because L (left) conformation "forbidden" or filtered. T0547 276 :AVEYSQ 1woqA 28 :IVDLKK Number of specific fragments extracted= 1 number of extra gaps= 2 total=93541 # 1jr7A.274.79 read from T0547.t06.many.frag # found chain 1jr7A in template set T0547 274 :GLAVEYSQF 1jr7A 94 :ALLINAVGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=93542 # 1nuyA.274.134 read from T0547.t06.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)S280 because of BadResidue code BAD_PEPTIDE in next template residue (1nuyA)N1142 Warning: unaligning (T0547)Q281 because of BadResidue code BAD_PEPTIDE at template residue (1nuyA)N1142 T0547 274 :GLAVEY 1nuyA 1135 :IFGIYR T0547 282 :F 1nuyA 1143 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=93544 # 2a40B.274.167 read from T0547.t06.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)Y279 (2a40B)C173 because S (epsilon) conformation "forbidden" or filtered. T0547 274 :GLAVE 2a40B 168 :DFNAD T0547 280 :SQF 2a40B 174 :SYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=93546 # 1h0hB.274.2 read from T0547.t06.many.frag # found chain 1h0hB in training set Warning: unaligning (T0547)G274 (1h0hB)G3 because Y (epsilon') conformation "forbidden" or filtered. T0547 275 :LAVEYSQF 1h0hB 4 :FFVDTTRC Number of specific fragments extracted= 1 number of extra gaps= 1 total=93547 # 1q6zA.274.235 read from T0547.t06.many.frag # found chain 1q6zA in training set Warning: unaligning (T0547)F282 (1q6zA)T244 because G (3-10) conformation "forbidden" or filtered. T0547 274 :GLAVEYSQ 1q6zA 236 :SAPRCPFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=93548 # 1vs0A.274.164 read from T0547.t06.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE in next template residue (1vs0A)I616 Warning: unaligning (T0547)A276 because of BadResidue code BAD_PEPTIDE at template residue (1vs0A)I616 T0547 274 :G 1vs0A 614 :G T0547 277 :VEYSQF 1vs0A 617 :AKRRDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=93550 # 1dqtA.274.17 read from T0547.t06.many.frag # found chain 1dqtA in template set Warning: unaligning (T0547)E278 (1dqtA)E22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1dqtA)P25 because C (cis) conformation "forbidden" or filtered. T0547 274 :GLAV 1dqtA 18 :SFPC T0547 279 :YS 1dqtA 23 :YS T0547 282 :F 1dqtA 26 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=93553 # 1rtqA.274.96 read from T0547.t06.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)G274 (1rtqA)H97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1rtqA)T101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1rtqA)G103 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 because of BadResidue code BAD_PEPTIDE in next template residue (1rtqA)H105 Warning: unaligning (T0547)F282 because of BadResidue code BAD_PEPTIDE at template residue (1rtqA)H105 T0547 275 :LAV 1rtqA 98 :LDS T0547 279 :Y 1rtqA 102 :I Number of specific fragments extracted= 2 number of extra gaps= 3 total=93555 # 1vkpA.274.164 read from T0547.t06.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)Y279 (1vkpA)G170 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1vkpA)G172 because T (delta_L) conformation "forbidden" or filtered. T0547 274 :GLAVE 1vkpA 165 :SIHVD T0547 280 :S 1vkpA 171 :E T0547 282 :F 1vkpA 173 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=93558 # 1bouB.274.148 read from T0547.t06.many.frag # found chain 1bouB in template set T0547 274 :GLAVEYSQF 1bouB 149 :PFPVNVVTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=93559 # 1k2xB.274.97 read from T0547.t06.many.frag # found chain 1k2xB in training set T0547 274 :GLAVEYSQF 1k2xB 276 :GLIAIDHEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93560 # 1fcdA.274.104 read from T0547.t06.many.frag # found chain 1fcdA in template set T0547 274 :GLAVEYSQF 1fcdA 105 :GIELIYDKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=93561 # 1sur.274.150 read from T0547.t06.many.frag # found chain 1sur in template set T0547 274 :GLAVEYSQF 1sur 151 :WFAGLRREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=93562 # 1knwA.275.227 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q281 (1knwA)Q234 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1knwA)G235 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1knwA)E236 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :LAVEYS 1knwA 228 :LSVPYQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=93563 # 1fobA.275.248 read from T0547.t06.many.frag # found chain 1fobA in training set Warning: unaligning (T0547)A276 (1fobA)P250 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :L 1fobA 249 :W T0547 277 :VEYSQFK 1fobA 251 :VSCPNPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=93565 # 1zavA.275.25 read from T0547.t06.many.frag # found chain 1zavA in template set Warning: unaligning (T0547)A276 (1zavA)F26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E278 (1zavA)D28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1zavA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 275 :L 1zavA 25 :L T0547 277 :V 1zavA 27 :A T0547 279 :YS 1zavA 29 :FL T0547 282 :FK 1zavA 32 :FT Number of specific fragments extracted= 4 number of extra gaps= 3 total=93569 # 1iu8A.275.161 read from T0547.t06.many.frag # found chain 1iu8A in training set T0547 275 :LAVEYSQFK 1iu8A 162 :IHVPYTPDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=93570 # 1wpoA.275.18 read from T0547.t06.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wpoA)L33 T0547 275 :LAVEYSQ 1wpoA 19 :FLARYDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=93571 # 2bw4A.275.180 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)E278 (2bw4A)Y184 because D (zeta) conformation "forbidden" or filtered. T0547 275 :LAV 2bw4A 181 :QDF T0547 279 :YSQFK 2bw4A 185 :VPKDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=93573 # 1onrA.275.259 read from T0547.t06.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)E278 (1onrA)S264 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1onrA)V269 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :LAV 1onrA 261 :RKL T0547 279 :YSQF 1onrA 265 :YTGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=93575 # 1w8kA.275.58 read from T0547.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)A276 (1w8kA)G100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1w8kA)N105 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1w8kA)D107 because G (3-10) conformation "forbidden" or filtered. T0547 275 :L 1w8kA 99 :K T0547 277 :VEYS 1w8kA 101 :IVIE T0547 282 :F 1w8kA 106 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=93578 # 1tz9A.275.327 read from T0547.t06.many.frag # found chain 1tz9A in template set Warning: unaligning (T0547)E278 (1tz9A)A321 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1tz9A)W323 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1tz9A)D324 because L (left) conformation "forbidden" or filtered. T0547 275 :LAV 1tz9A 318 :HGR T0547 279 :Y 1tz9A 322 :I T0547 282 :FK 1tz9A 325 :EK Number of specific fragments extracted= 3 number of extra gaps= 2 total=93581 # 2fckA.275.72 read from T0547.t06.many.frag # found chain 2fckA in training set Warning: unaligning (T0547)K283 (2fckA)Q78 because L (left) conformation "forbidden" or filtered. T0547 275 :LAVEYSQF 2fckA 70 :FGVFERQT Number of specific fragments extracted= 1 number of extra gaps= 1 total=93582 # 1zwxA.275.195 read from T0547.t06.many.frag # found chain 1zwxA in template set Warning: unaligning (T0547)A276 (1zwxA)N231 because L (left) conformation "forbidden" or filtered. T0547 275 :L 1zwxA 230 :L T0547 277 :VEYSQFK 1zwxA 232 :VNYGTDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=93584 # 1fvkA.275.158 read from T0547.t06.many.frag # found chain 1fvkA in training set Warning: unaligning (T0547)K283 (1fvkA)D167 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :LAVEYSQF 1fvkA 159 :YQLNPQGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=93585 # 1z90A.275.258 read from T0547.t06.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)S280 (1z90A)E264 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1z90A)G265 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1z90A)V267 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :LAVEY 1z90A 259 :TLISY T0547 282 :F 1z90A 266 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=93587 # 2f8aA.275.85 read from T0547.t06.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)Y279 (2f8aA)Q78 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (2f8aA)H81 because L (left) conformation "forbidden" or filtered. T0547 275 :LAVE 2f8aA 74 :FPCN T0547 280 :SQ 2f8aA 79 :FG T0547 283 :K 2f8aA 82 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=93590 # 1woqA.275.26 read from T0547.t06.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)L275 (1woqA)G27 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A276 (1woqA)I28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1woqA)G34 because L (left) conformation "forbidden" or filtered. T0547 277 :VEYSQ 1woqA 29 :VDLKK T0547 283 :K 1woqA 35 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=93592 # 1vs0A.275.165 read from T0547.t06.many.frag # found chain 1vs0A in template set Warning: unaligning (T0547)L275 because of BadResidue code BAD_PEPTIDE in next template residue (1vs0A)I616 Warning: unaligning (T0547)A276 because of BadResidue code BAD_PEPTIDE at template residue (1vs0A)I616 T0547 277 :VEYSQFK 1vs0A 617 :AKRRDSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=93593 # 1c6vX.275.10 read from T0547.t06.many.frag # found chain 1c6vX in template set Warning: unaligning (T0547)E278 (1c6vX)Y226 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :LAV 1c6vX 223 :FRV T0547 279 :YSQFK 1c6vX 227 :YREGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=93595 # 1nu0A.275.60 read from T0547.t06.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)A276 (1nu0A)P62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1nu0A)E69 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :L 1nu0A 61 :L T0547 277 :VEYSQF 1nu0A 63 :LNMDGT Number of specific fragments extracted= 2 number of extra gaps= 2 total=93597 # 1jr7A.275.80 read from T0547.t06.many.frag # found chain 1jr7A in template set Warning: unaligning (T0547)E278 (1jr7A)N98 because Y (epsilon') conformation "forbidden" or filtered. T0547 275 :LAV 1jr7A 95 :LLI T0547 279 :YSQFK 1jr7A 99 :AVGVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=93599 # 1zboA.275.66 read from T0547.t06.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)Q281 (1zboA)H73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1zboA)E75 because Y (epsilon') conformation "forbidden" or filtered. T0547 275 :LAVEYS 1zboA 67 :TMARID T0547 282 :F 1zboA 74 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=93601 # 1qu9A.275.32 read from T0547.t06.many.frag # found chain 1qu9A in training set T0547 275 :LAVEYSQFK 1qu9A 33 :IPVNPKTGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=93602 # 1h80A.275.119 read from T0547.t06.many.frag # found chain 1h80A in training set Warning: unaligning (T0547)A276 (1h80A)L148 because E (beta_S) conformation "forbidden" or filtered. T0547 275 :L 1h80A 147 :F T0547 277 :VEYSQFK 1h80A 149 :VDFKDSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=93604 # 2czlA.275.177 read from T0547.t06.many.frag # found chain 2czlA in training set T0547 275 :LAVEYSQFK 2czlA 178 :AILARRDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93605 # 1pguA.275.41 read from T0547.t06.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)S280 (1pguA)D47 because P (beta_P) conformation "forbidden" or filtered. T0547 275 :LAVEY 1pguA 42 :FVRCL T0547 281 :QFK 1pguA 48 :DGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=93607 1z4rA expands to /projects/compbio/data/pdb/1z4r.pdb.gz 1z4rA:# 1z4rA.275.83 read from T0547.t06.many.frag # adding 1z4rA to template set # found chain 1z4rA in template set T0547 275 :LAVEYSQFK 1z4rA 578 :FCAVTSNEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=93608 2b5iC expands to /projects/compbio/data/pdb/2b5i.pdb.gz 2b5iC:# 2b5iC.275.31 read from T0547.t06.many.frag # adding 2b5iC to template set # found chain 2b5iC in template set Warning: unaligning (T0547)S280 (2b5iC)K70 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (2b5iC)N71 because L (left) conformation "forbidden" or filtered. T0547 275 :LAVEY 2b5iC 65 :LHYWY T0547 282 :FK 2b5iC 72 :SD Number of specific fragments extracted= 2 number of extra gaps= 1 total=93610 # 2btoA.275.274 read from T0547.t06.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)E278 (2btoA)P278 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (2btoA)L279 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2btoA)E289 T0547 275 :LAV 2btoA 275 :AFA T0547 280 :SQF 2btoA 280 :TPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=93612 # 1h0hB.275.3 read from T0547.t06.many.frag # found chain 1h0hB in training set T0547 275 :LAVEYSQFK 1h0hB 4 :FFVDTTRCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=93613 # 1q6zA.275.236 read from T0547.t06.many.frag # found chain 1q6zA in training set Warning: unaligning (T0547)V277 (1q6zA)R239 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1q6zA)T244 because G (3-10) conformation "forbidden" or filtered. T0547 275 :LA 1q6zA 237 :AP T0547 278 :EYSQ 1q6zA 240 :CPFP T0547 283 :K 1q6zA 245 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=93616 # 1ogoX.275.440 read from T0547.t06.many.frag # found chain 1ogoX in training set T0547 275 :LAVEYSQFK 1ogoX 441 :IHTRYIKSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=93617 # 1knwA.276.228 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A276 (1knwA)S229 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1knwA)Q234 because P (beta_P) conformation "forbidden" or filtered. T0547 277 :VEYS 1knwA 230 :VPYQ T0547 282 :FKN 1knwA 235 :GEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=93619 # 1onrA.276.260 read from T0547.t06.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)E278 (1onrA)S264 because Y (epsilon') conformation "forbidden" or filtered. T0547 276 :AV 1onrA 262 :KL T0547 279 :YSQFKN 1onrA 265 :YTGEVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=93621 # 1zavA.276.26 read from T0547.t06.many.frag # found chain 1zavA in template set Warning: unaligning (T0547)A276 (1zavA)F26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1zavA)L30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1zavA)T33 because P (beta_P) conformation "forbidden" or filtered. T0547 277 :VEY 1zavA 27 :ADF T0547 281 :QF 1zavA 31 :GF T0547 284 :N 1zavA 34 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=93624 # 1w8kA.276.59 read from T0547.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)A276 (1w8kA)G100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1w8kA)N105 because L (left) conformation "forbidden" or filtered. T0547 277 :VEYS 1w8kA 101 :IVIE T0547 282 :FKN 1w8kA 106 :SDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=93626 # 1wpoA.276.19 read from T0547.t06.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)E278 (1wpoA)R22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wpoA)L33 T0547 276 :AV 1wpoA 20 :LA T0547 279 :YSQ 1wpoA 23 :YDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=93628 # 1fobA.276.249 read from T0547.t06.many.frag # found chain 1fobA in training set T0547 276 :AVEYSQFKN 1fobA 250 :PVSCPNPAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=93629 # 2bw4A.276.181 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)E278 (2bw4A)Y184 because D (zeta) conformation "forbidden" or filtered. T0547 276 :AV 2bw4A 182 :DF T0547 279 :YSQFKN 2bw4A 185 :VPKDEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=93631 # 1dfuP.276.26 read from T0547.t06.many.frag # found chain 1dfuP in training set Warning: unaligning (T0547)S280 (1dfuP)Y31 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1dfuP)G33 because S (epsilon) conformation "forbidden" or filtered. T0547 276 :AVEY 1dfuP 27 :PAII T0547 281 :Q 1dfuP 32 :G T0547 283 :KN 1dfuP 34 :KE Number of specific fragments extracted= 3 number of extra gaps= 2 total=93634 # 1iu8A.276.162 read from T0547.t06.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)E278 (1iu8A)P165 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1iu8A)V171 because G (3-10) conformation "forbidden" or filtered. T0547 276 :AV 1iu8A 163 :HV T0547 279 :YSQFK 1iu8A 166 :YTPDQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=93636 # 1fvkA.276.159 read from T0547.t06.many.frag # found chain 1fvkA in training set T0547 276 :AVEYSQFKN 1fvkA 160 :QLNPQGMDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=93637 # 1h80A.276.120 read from T0547.t06.many.frag # found chain 1h80A in training set T0547 276 :AVEYSQFKN 1h80A 148 :LVDFKDSRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=93638 # 1c6vX.276.11 read from T0547.t06.many.frag # found chain 1c6vX in template set Warning: unaligning (T0547)E278 (1c6vX)Y226 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1c6vX)D232 because Y (epsilon') conformation "forbidden" or filtered. T0547 276 :AV 1c6vX 224 :RV T0547 279 :YSQFK 1c6vX 227 :YREGR Number of specific fragments extracted= 2 number of extra gaps= 2 total=93640 # 1zboA.276.67 read from T0547.t06.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)Q281 (1zboA)H73 because Y (epsilon') conformation "forbidden" or filtered. T0547 276 :AVEYS 1zboA 68 :MARID T0547 282 :FKN 1zboA 74 :WEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=93642 # 1tz9A.276.328 read from T0547.t06.many.frag # found chain 1tz9A in template set Warning: unaligning (T0547)Q281 (1tz9A)D324 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1tz9A)A327 because P (beta_P) conformation "forbidden" or filtered. T0547 276 :AVEYS 1tz9A 319 :GRAIW T0547 282 :FK 1tz9A 325 :EK Number of specific fragments extracted= 2 number of extra gaps= 2 total=93644 # 1hdoA.276.112 read from T0547.t06.many.frag # found chain 1hdoA in training set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 T0547 276 :AVEYSQF 1hdoA 113 :FLLWDPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=93645 # 1qu9A.276.33 read from T0547.t06.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)F282 (1qu9A)G40 because T (delta_L) conformation "forbidden" or filtered. T0547 276 :AVEYSQ 1qu9A 34 :PVNPKT T0547 283 :KN 1qu9A 41 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=93647 # 2b5iC.276.32 read from T0547.t06.many.frag # found chain 2b5iC in template set Warning: unaligning (T0547)N284 (2b5iC)N74 because L (left) conformation "forbidden" or filtered. T0547 276 :AVEYSQFK 2b5iC 66 :HYWYKNSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=93648 # 1h6fA.276.38 read from T0547.t06.many.frag # found chain 1h6fA in training set T0547 276 :AVEYSQFKN 1h6fA 137 :KVRCSGLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=93649 # 1pguA.276.42 read from T0547.t06.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)K283 (1pguA)D50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1pguA)S51 because Y (epsilon') conformation "forbidden" or filtered. T0547 276 :AVEYSQF 1pguA 43 :VRCLDDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=93650 # 1nu0A.276.61 read from T0547.t06.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)E278 (1nu0A)N64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1nu0A)G67 because T (delta_L) conformation "forbidden" or filtered. T0547 276 :AV 1nu0A 62 :PL T0547 279 :YS 1nu0A 65 :MD T0547 282 :FKN 1nu0A 68 :TEQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=93653 # 1dqtA.276.19 read from T0547.t06.many.frag # found chain 1dqtA in template set Warning: unaligning (T0547)E278 (1dqtA)E22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1dqtA)P25 because C (cis) conformation "forbidden" or filtered. T0547 276 :AV 1dqtA 20 :PC T0547 279 :YS 1dqtA 23 :YS T0547 282 :FKN 1dqtA 26 :SHN Number of specific fragments extracted= 3 number of extra gaps= 2 total=93656 # 1q3iA.276.171 read from T0547.t06.many.frag # found chain 1q3iA in template set Warning: unaligning (T0547)A276 (1q3iA)Q550 because Y (epsilon') conformation "forbidden" or filtered. T0547 277 :VEYSQFKN 1q3iA 551 :LNLPSGKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=93657 # 1woqA.276.27 read from T0547.t06.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)A276 (1woqA)I28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1woqA)G34 because L (left) conformation "forbidden" or filtered. T0547 277 :VEYSQ 1woqA 29 :VDLKK T0547 283 :KN 1woqA 35 :KL Number of specific fragments extracted= 2 number of extra gaps= 2 total=93659 # 2czlA.276.178 read from T0547.t06.many.frag # found chain 2czlA in training set Warning: unaligning (T0547)A276 (2czlA)I179 because E (beta_S) conformation "forbidden" or filtered. T0547 277 :VEYSQFKN 2czlA 180 :LARRDLGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=93660 # 1jr7A.276.81 read from T0547.t06.many.frag # found chain 1jr7A in template set Warning: unaligning (T0547)E278 (1jr7A)N98 because Y (epsilon') conformation "forbidden" or filtered. T0547 276 :AV 1jr7A 96 :LI T0547 279 :YSQFKN 1jr7A 99 :AVGVDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=93662 # 2f8aA.276.86 read from T0547.t06.many.frag # found chain 2f8aA in training set Warning: unaligning (T0547)Q281 (2f8aA)G80 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (2f8aA)H81 because L (left) conformation "forbidden" or filtered. T0547 276 :AVEYS 2f8aA 75 :PCNQF T0547 283 :KN 2f8aA 82 :QE Number of specific fragments extracted= 2 number of extra gaps= 1 total=93664 # 1ro7A.276.151 read from T0547.t06.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)S280 (1ro7A)Y156 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1ro7A)G159 because S (epsilon) conformation "forbidden" or filtered. T0547 276 :AVEY 1ro7A 152 :GIDF T0547 281 :QF 1ro7A 157 :QN T0547 284 :N 1ro7A 160 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=93667 # 1v2bA.276.50 read from T0547.t06.many.frag # found chain 1v2bA in training set T0547 276 :AVEYSQFKN 1v2bA 60 :IVAITPTDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=93668 # 1e19A.276.240 read from T0547.t06.many.frag # found chain 1e19A in training set T0547 276 :AVEYSQFKN 1e19A 241 :ALYYGTEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=93669 # 1v84A.276.226 read from T0547.t06.many.frag # found chain 1v84A in template set T0547 276 :AVEYSQFKN 1v84A 308 :LVWHTRTEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=93670 # 1knwA.277.229 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)F282 (1knwA)G235 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1knwA)A238 because P (beta_P) conformation "forbidden" or filtered. T0547 277 :VEYSQ 1knwA 230 :VPYQQ T0547 283 :KN 1knwA 236 :EE Number of specific fragments extracted= 2 number of extra gaps= 2 total=93672 # 1onrA.277.261 read from T0547.t06.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)E278 (1onrA)S264 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1onrA)K270 because E (beta_S) conformation "forbidden" or filtered. T0547 277 :V 1onrA 263 :L T0547 279 :YSQFK 1onrA 265 :YTGEV T0547 285 :E 1onrA 271 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=93675 # 1w8kA.277.60 read from T0547.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)N284 (1w8kA)V108 because P (beta_P) conformation "forbidden" or filtered. T0547 277 :VEYSQFK 1w8kA 101 :IVIENSD T0547 285 :E 1w8kA 109 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=93677 # 1dfuP.277.27 read from T0547.t06.many.frag # found chain 1dfuP in training set Warning: unaligning (T0547)V277 (1dfuP)A28 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1dfuP)Y31 because Y (epsilon') conformation "forbidden" or filtered. T0547 278 :EY 1dfuP 29 :II T0547 281 :QFKNE 1dfuP 32 :GGKEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=93679 # 4dpvZ.277.230 read from T0547.t06.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)E278 (4dpvZ)I232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (4dpvZ)G235 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (4dpvZ)D237 because N (gamma') conformation "forbidden" or filtered. T0547 277 :V 4dpvZ 231 :N T0547 279 :YS 4dpvZ 233 :YH T0547 282 :F 4dpvZ 236 :T T0547 284 :NE 4dpvZ 238 :PD Number of specific fragments extracted= 4 number of extra gaps= 3 total=93683 # 1zboA.277.68 read from T0547.t06.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)Q281 (1zboA)H73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1zboA)E75 because Y (epsilon') conformation "forbidden" or filtered. T0547 277 :VEYS 1zboA 69 :ARID T0547 282 :F 1zboA 74 :W T0547 284 :NE 1zboA 76 :AP Number of specific fragments extracted= 3 number of extra gaps= 2 total=93686 # 1ro7A.277.152 read from T0547.t06.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)Y279 (1ro7A)F155 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1ro7A)G159 because S (epsilon) conformation "forbidden" or filtered. T0547 277 :VE 1ro7A 153 :ID T0547 280 :SQF 1ro7A 156 :YQN T0547 284 :NE 1ro7A 160 :SS Number of specific fragments extracted= 3 number of extra gaps= 2 total=93689 # 1wpoA.277.20 read from T0547.t06.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wpoA)L33 T0547 277 :VEYSQ 1wpoA 21 :ARYDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=93690 # 1h80A.277.121 read from T0547.t06.many.frag # found chain 1h80A in training set T0547 277 :VEYSQFKNE 1h80A 149 :VDFKDSRDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=93691 # 1zavA.277.27 read from T0547.t06.many.frag # found chain 1zavA in template set Warning: unaligning (T0547)Q281 (1zavA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 277 :VEYS 1zavA 27 :ADFL T0547 282 :FKNE 1zavA 32 :FTVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=93693 # 1fvkA.277.160 read from T0547.t06.many.frag # found chain 1fvkA in training set Warning: unaligning (T0547)K283 (1fvkA)D167 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1fvkA)T168 because G (3-10) conformation "forbidden" or filtered. T0547 277 :VEYSQF 1fvkA 161 :LNPQGM T0547 285 :E 1fvkA 169 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=93695 # 1hdoA.277.113 read from T0547.t06.many.frag # found chain 1hdoA in training set Warning: unaligning (T0547)S280 (1hdoA)D117 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 T0547 277 :VEY 1hdoA 114 :LLW T0547 281 :QF 1hdoA 118 :PT T0547 285 :E 1hdoA 122 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=93698 # 1qu9A.277.34 read from T0547.t06.many.frag # found chain 1qu9A in training set T0547 277 :VEYSQFKNE 1qu9A 35 :VNPKTGEVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=93699 # 1h6fA.277.39 read from T0547.t06.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)Q281 (1h6fA)G142 because L (left) conformation "forbidden" or filtered. T0547 277 :VEYS 1h6fA 138 :VRCS T0547 282 :FKNE 1h6fA 143 :LDKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=93701 # 2bw4A.277.182 read from T0547.t06.many.frag # found chain 2bw4A in training set T0547 277 :VEYSQFKNE 2bw4A 183 :FYVPKDEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=93702 # 1c6vX.277.12 read from T0547.t06.many.frag # found chain 1c6vX in template set Warning: unaligning (T0547)N284 (1c6vX)D232 because Y (epsilon') conformation "forbidden" or filtered. T0547 277 :VEYSQFK 1c6vX 225 :VYYREGR T0547 285 :E 1c6vX 233 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=93704 # 1e19A.277.241 read from T0547.t06.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)E278 (1e19A)Y243 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1e19A)Q250 because E (beta_S) conformation "forbidden" or filtered. T0547 277 :V 1e19A 242 :L T0547 279 :YSQFKN 1e19A 244 :YGTEKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=93706 # 4eugA.277.125 read from T0547.t06.many.frag # found chain 4eugA in template set Warning: unaligning (T0547)N284 (4eugA)A133 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (4eugA)H134 because T (delta_L) conformation "forbidden" or filtered. T0547 277 :VEYSQFK 4eugA 126 :LTVRAGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=93707 # 1iu8A.277.163 read from T0547.t06.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)N284 (1iu8A)V171 because G (3-10) conformation "forbidden" or filtered. T0547 277 :VEYSQFK 1iu8A 164 :VPYTPDQ T0547 285 :E 1iu8A 172 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=93709 # 1fobA.277.250 read from T0547.t06.many.frag # found chain 1fobA in training set T0547 277 :VEYSQFKNE 1fobA 251 :VSCPNPAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=93710 # 1r5lA.277.100 read from T0547.t06.many.frag # found chain 1r5lA in training set T0547 277 :VEYSQFKNE 1r5lA 117 :YRIAHWDPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=93711 # 1fviA.277.96 read from T0547.t06.many.frag # found chain 1fviA in template set Warning: unaligning (T0547)E278 (1fviA)D99 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (1fviA)Y100 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1fviA)T102 because T (delta_L) conformation "forbidden" or filtered. T0547 277 :V 1fviA 98 :F T0547 280 :S 1fviA 101 :V T0547 282 :FKNE 1fviA 103 :DDPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=93714 # 1nvmB.277.195 read from T0547.t06.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)E278 (1nvmB)I197 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1nvmB)P203 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1nvmB)P203 T0547 277 :V 1nvmB 196 :I T0547 279 :YSQF 1nvmB 198 :MNPA T0547 285 :E 1nvmB 204 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=93717 # 1v2bA.277.51 read from T0547.t06.many.frag # found chain 1v2bA in training set T0547 277 :VEYSQFKNE 1v2bA 61 :VAITPTDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=93718 # 1dqtA.277.20 read from T0547.t06.many.frag # found chain 1dqtA in template set Warning: unaligning (T0547)Q281 (1dqtA)P25 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1dqtA)H27 because E (beta_S) conformation "forbidden" or filtered. T0547 277 :VEYS 1dqtA 21 :CEYS T0547 282 :F 1dqtA 26 :S T0547 284 :NE 1dqtA 28 :NT Number of specific fragments extracted= 3 number of extra gaps= 2 total=93721 # 1pguA.277.43 read from T0547.t06.many.frag # found chain 1pguA in template set T0547 277 :VEYSQFKNE 1pguA 44 :RCLDDGDSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=93722 # 1nu0A.277.62 read from T0547.t06.many.frag # found chain 1nu0A in training set T0547 277 :VEYSQFKNE 1nu0A 63 :LNMDGTEQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=93723 # 1nar.277.267 read from T0547.t06.many.frag # found chain 1nar in training set Warning: unaligning (T0547)F282 (1nar)G273 because T (delta_L) conformation "forbidden" or filtered. T0547 277 :VEYSQ 1nar 268 :IPKRD T0547 283 :KNE 1nar 274 :DKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=93725 # 1k5cA.277.259 read from T0547.t06.many.frag # found chain 1k5cA in training set Warning: unaligning (T0547)S280 (1k5cA)P263 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1k5cA)V266 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1k5cA)G267 because S (epsilon) conformation "forbidden" or filtered. T0547 277 :VEY 1k5cA 260 :QSY T0547 281 :QF 1k5cA 264 :DD T0547 285 :E 1k5cA 268 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=93728 # 2a40B.277.170 read from T0547.t06.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)Y279 (2a40B)C173 because S (epsilon) conformation "forbidden" or filtered. T0547 277 :VE 2a40B 171 :AD T0547 280 :SQFKNE 2a40B 174 :SYVTSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=93730 # 1knwA.278.230 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K283 (1knwA)E236 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1knwA)E237 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1knwA)V239 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYSQF 1knwA 231 :PYQQG T0547 285 :E 1knwA 238 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=93732 # 1onrA.278.262 read from T0547.t06.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)Y279 (1onrA)Y265 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1onrA)T266 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1onrA)G267 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1onrA)K270 because E (beta_S) conformation "forbidden" or filtered. T0547 278 :E 1onrA 264 :S T0547 282 :FK 1onrA 268 :EV T0547 285 :EK 1onrA 271 :AR Number of specific fragments extracted= 3 number of extra gaps= 2 total=93735 # 4dpvZ.278.231 read from T0547.t06.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)E278 (4dpvZ)I232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (4dpvZ)Y233 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (4dpvZ)G235 because Y (epsilon') conformation "forbidden" or filtered. T0547 280 :S 4dpvZ 234 :H T0547 282 :FKNEK 4dpvZ 236 :TDPDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=93737 # 1zboA.278.69 read from T0547.t06.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)Q281 (1zboA)H73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1zboA)E75 because Y (epsilon') conformation "forbidden" or filtered. T0547 278 :EYS 1zboA 70 :RID T0547 282 :F 1zboA 74 :W T0547 284 :NEK 1zboA 76 :APM Number of specific fragments extracted= 3 number of extra gaps= 2 total=93740 # 1w8kA.278.61 read from T0547.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)Q281 (1w8kA)N105 because L (left) conformation "forbidden" or filtered. T0547 278 :EYS 1w8kA 102 :VIE T0547 282 :FKNEK 1w8kA 106 :SDVSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=93742 # 1ro7A.278.153 read from T0547.t06.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)Y279 (1ro7A)F155 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1ro7A)S161 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1ro7A)Y162 because Y (epsilon') conformation "forbidden" or filtered. T0547 278 :E 1ro7A 154 :D T0547 280 :SQFKN 1ro7A 156 :YQNGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=93744 # 1qu9A.278.35 read from T0547.t06.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)K283 (1qu9A)E41 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE in next template residue (1qu9A)D45 T0547 278 :EYSQF 1qu9A 36 :NPKTG T0547 284 :NE 1qu9A 42 :VP Number of specific fragments extracted= 2 number of extra gaps= 2 total=93746 # 1h80A.278.122 read from T0547.t06.many.frag # found chain 1h80A in training set T0547 278 :EYSQFKNEK 1h80A 150 :DFKDSRDKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=93747 # 1hdoA.278.114 read from T0547.t06.many.frag # found chain 1hdoA in training set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0547)E285 (1hdoA)P122 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYSQF 1hdoA 115 :LWDPT T0547 286 :K 1hdoA 123 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=93749 # 1dfuP.278.28 read from T0547.t06.many.frag # found chain 1dfuP in training set Warning: unaligning (T0547)E278 (1dfuP)I29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1dfuP)G32 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1dfuP)G33 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1dfuP)A36 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YS 1dfuP 30 :IY T0547 283 :KN 1dfuP 34 :KE T0547 286 :K 1dfuP 37 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=93752 # 1fvkA.278.161 read from T0547.t06.many.frag # found chain 1fvkA in training set Warning: unaligning (T0547)K283 (1fvkA)D167 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYSQF 1fvkA 162 :NPQGM T0547 284 :NEK 1fvkA 168 :TSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=93754 # 1wpoA.278.21 read from T0547.t06.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wpoA)L33 T0547 278 :EYSQ 1wpoA 22 :RYDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=93755 # 1e19A.278.242 read from T0547.t06.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)E278 (1e19A)Y243 because L (left) conformation "forbidden" or filtered. T0547 279 :YSQFKNEK 1e19A 244 :YGTEKEQW Number of specific fragments extracted= 1 number of extra gaps= 1 total=93756 # 2exrA.278.320 read from T0547.t06.many.frag # found chain 2exrA in training set T0547 278 :EYSQFKNEK 2exrA 321 :HYRDSDSNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=93757 # 4eugA.278.126 read from T0547.t06.many.frag # found chain 4eugA in template set Warning: unaligning (T0547)K283 (4eugA)Q132 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (4eugA)H134 because T (delta_L) conformation "forbidden" or filtered. T0547 278 :EYSQF 4eugA 127 :TVRAG T0547 284 :N 4eugA 133 :A T0547 286 :K 4eugA 135 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=93760 # 1nar.278.268 read from T0547.t06.many.frag # found chain 1nar in training set Warning: unaligning (T0547)F282 (1nar)G273 because T (delta_L) conformation "forbidden" or filtered. T0547 278 :EYSQ 1nar 269 :PKRD T0547 283 :KNEK 1nar 274 :DKPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=93762 # 1nu0A.278.63 read from T0547.t06.many.frag # found chain 1nu0A in training set Warning: unaligning (T0547)Q281 (1nu0A)G67 because T (delta_L) conformation "forbidden" or filtered. T0547 278 :EYS 1nu0A 64 :NMD T0547 282 :FKNEK 1nu0A 68 :TEQPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=93764 # 1fviA.278.97 read from T0547.t06.many.frag # found chain 1fviA in template set Warning: unaligning (T0547)E278 (1fviA)D99 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y279 (1fviA)Y100 because D (zeta) conformation "forbidden" or filtered. T0547 280 :SQFKNEK 1fviA 101 :VTDDPLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=93765 # 1nvmB.278.196 read from T0547.t06.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)E278 (1nvmB)I197 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1nvmB)P203 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1nvmB)P203 Warning: unaligning (T0547)K286 (1nvmB)L205 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQF 1nvmB 198 :MNPA T0547 285 :E 1nvmB 204 :P Number of specific fragments extracted= 2 number of extra gaps= 3 total=93767 # 2anxA.278.38 read from T0547.t06.many.frag # found chain 2anxA in training set Warning: unaligning (T0547)S280 (2anxA)D41 because L (left) conformation "forbidden" or filtered. T0547 278 :EY 2anxA 39 :KV T0547 281 :QFKNEK 2anxA 42 :GNSVAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=93769 # 1h6fA.278.40 read from T0547.t06.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)Q281 (1h6fA)G142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1h6fA)A147 because P (beta_P) conformation "forbidden" or filtered. T0547 278 :EYS 1h6fA 139 :RCS T0547 282 :FKNE 1h6fA 143 :LDKK Number of specific fragments extracted= 2 number of extra gaps= 2 total=93771 # 1zavA.278.28 read from T0547.t06.many.frag # found chain 1zavA in template set Warning: unaligning (T0547)Q281 (1zavA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 278 :EYS 1zavA 28 :DFL T0547 282 :FKNEK 1zavA 32 :FTVAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=93773 # 1wojA.278.70 read from T0547.t06.many.frag # found chain 1wojA in training set Warning: unaligning (T0547)S280 (1wojA)D238 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1wojA)Y239 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1wojA)G240 because T (delta_L) conformation "forbidden" or filtered. T0547 278 :EY 1wojA 236 :FC T0547 283 :KNEK 1wojA 241 :KAPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=93775 # 2btoA.278.277 read from T0547.t06.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)E278 (2btoA)P278 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2btoA)E289 T0547 279 :YSQF 2btoA 279 :LTPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=93776 # 1zgmA.278.123 read from T0547.t06.many.frag # found chain 1zgmA in template set Warning: unaligning (T0547)Y279 (1zgmA)T113 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1zgmA)L114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1zgmA)N115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1zgmA)G117 because Y (epsilon') conformation "forbidden" or filtered. T0547 278 :E 1zgmA 112 :L T0547 282 :F 1zgmA 116 :G T0547 284 :NEK 1zgmA 118 :REM Number of specific fragments extracted= 3 number of extra gaps= 2 total=93779 # 2bhuA.278.277 read from T0547.t06.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)K283 (2bhuA)D283 because G (3-10) conformation "forbidden" or filtered. T0547 278 :EYSQF 2bhuA 278 :PYMTD T0547 284 :NEK 2bhuA 284 :SET Number of specific fragments extracted= 2 number of extra gaps= 1 total=93781 # 1vp4A.278.233 read from T0547.t06.many.frag # found chain 1vp4A in template set T0547 278 :EYSQFKNEK 1vp4A 222 :RYEGETVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=93782 # 1v2bA.278.52 read from T0547.t06.many.frag # found chain 1v2bA in training set Warning: unaligning (T0547)E278 (1v2bA)A62 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1v2bA)K68 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQFK 1v2bA 63 :ITPTD T0547 285 :EK 1v2bA 69 :KS Number of specific fragments extracted= 2 number of extra gaps= 2 total=93784 # 2bw4A.278.183 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)E285 (2bw4A)G191 because T (delta_L) conformation "forbidden" or filtered. T0547 278 :EYSQFKN 2bw4A 184 :YVPKDEA T0547 286 :K 2bw4A 192 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=93786 # 1pguA.278.44 read from T0547.t06.many.frag # found chain 1pguA in template set T0547 278 :EYSQFKNEK 1pguA 45 :CLDDGDSKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=93787 # 1onrA.279.263 read from T0547.t06.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)K283 (1onrA)V269 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1onrA)P273 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQF 1onrA 265 :YTGE T0547 284 :NEK 1onrA 270 :KAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=93789 # 4dpvZ.279.232 read from T0547.t06.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)Q281 (4dpvZ)G235 because Y (epsilon') conformation "forbidden" or filtered. T0547 279 :YS 4dpvZ 233 :YH T0547 282 :FKNEKS 4dpvZ 236 :TDPDDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=93791 # 1knwA.279.231 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)F282 (1knwA)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 279 :YSQ 1knwA 232 :YQQ T0547 283 :KNEKS 1knwA 236 :EEAVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=93793 # 1ro7A.279.154 read from T0547.t06.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)Y279 (1ro7A)F155 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S280 (1ro7A)Y156 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1ro7A)G159 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1ro7A)Y162 because Y (epsilon') conformation "forbidden" or filtered. T0547 281 :QF 1ro7A 157 :QN T0547 284 :NE 1ro7A 160 :SS T0547 287 :S 1ro7A 163 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=93796 # 1zboA.279.70 read from T0547.t06.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)Q281 (1zboA)H73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1zboA)E75 because Y (epsilon') conformation "forbidden" or filtered. T0547 279 :YS 1zboA 71 :ID T0547 282 :F 1zboA 74 :W T0547 284 :NEKS 1zboA 76 :APMP Number of specific fragments extracted= 3 number of extra gaps= 2 total=93799 # 1w8kA.279.62 read from T0547.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)S280 (1w8kA)E104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1w8kA)N105 because L (left) conformation "forbidden" or filtered. T0547 279 :Y 1w8kA 103 :I T0547 282 :FKNEKS 1w8kA 106 :SDVSFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=93801 # 1e19A.279.243 read from T0547.t06.many.frag # found chain 1e19A in training set T0547 279 :YSQFKNEKS 1e19A 244 :YGTEKEQWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=93802 # 1hdoA.279.115 read from T0547.t06.many.frag # found chain 1hdoA in training set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 T0547 279 :YSQF 1hdoA 116 :WDPT T0547 285 :EKS 1hdoA 122 :PPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=93804 # 4eugA.279.127 read from T0547.t06.many.frag # found chain 4eugA in template set Warning: unaligning (T0547)F282 (4eugA)G131 because T (delta_L) conformation "forbidden" or filtered. T0547 279 :YSQ 4eugA 128 :VRA T0547 283 :KNEKS 4eugA 132 :QAHSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=93806 # 1fvkA.279.162 read from T0547.t06.many.frag # found chain 1fvkA in training set T0547 279 :YSQFKNEKS 1fvkA 163 :PQGMDTSNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=93807 # 1qu9A.279.36 read from T0547.t06.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)F282 (1qu9A)G40 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE in next template residue (1qu9A)D45 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1qu9A)D45 T0547 279 :YSQ 1qu9A 37 :PKT T0547 283 :KNE 1qu9A 41 :EVP Number of specific fragments extracted= 2 number of extra gaps= 2 total=93809 # 1wpoA.279.22 read from T0547.t06.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)S280 (1wpoA)D24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wpoA)L33 T0547 279 :Y 1wpoA 23 :Y T0547 281 :Q 1wpoA 25 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=93811 # 2btoA.279.278 read from T0547.t06.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2btoA)E289 T0547 279 :YSQF 2btoA 279 :LTPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=93812 # 1dfuP.279.29 read from T0547.t06.many.frag # found chain 1dfuP in training set Warning: unaligning (T0547)S280 (1dfuP)Y31 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1dfuP)G33 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1dfuP)A36 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :Y 1dfuP 30 :I T0547 281 :Q 1dfuP 32 :G T0547 283 :KN 1dfuP 34 :KE T0547 286 :KS 1dfuP 37 :PL Number of specific fragments extracted= 4 number of extra gaps= 3 total=93816 # 1nar.279.269 read from T0547.t06.many.frag # found chain 1nar in training set Warning: unaligning (T0547)F282 (1nar)G273 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1nar)F277 because L (left) conformation "forbidden" or filtered. T0547 279 :YSQ 1nar 270 :KRD T0547 283 :KNE 1nar 274 :DKP T0547 287 :S 1nar 278 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=93819 # 1zgmA.279.124 read from T0547.t06.many.frag # found chain 1zgmA in template set Warning: unaligning (T0547)S280 (1zgmA)L114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1zgmA)G116 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1zgmA)G117 because Y (epsilon') conformation "forbidden" or filtered. T0547 279 :Y 1zgmA 113 :T T0547 281 :Q 1zgmA 115 :N T0547 284 :NEKS 1zgmA 118 :REMW Number of specific fragments extracted= 3 number of extra gaps= 2 total=93822 # 1nvmB.279.197 read from T0547.t06.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1nvmB)P203 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1nvmB)P203 Warning: unaligning (T0547)E285 (1nvmB)P204 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQF 1nvmB 198 :MNPA T0547 286 :KS 1nvmB 205 :LI Number of specific fragments extracted= 2 number of extra gaps= 1 total=93824 # 2anxA.279.39 read from T0547.t06.many.frag # found chain 2anxA in training set Warning: unaligning (T0547)E285 (2anxA)A46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (2anxA)G48 because T (delta_L) conformation "forbidden" or filtered. T0547 279 :YSQFKN 2anxA 40 :VDGNSV T0547 286 :K 2anxA 47 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=93826 # 1nu0A.279.64 read from T0547.t06.many.frag # found chain 1nu0A in training set T0547 279 :YSQFKNEKS 1nu0A 65 :MDGTEQPLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=93827 # 2bw4A.279.184 read from T0547.t06.many.frag # found chain 2bw4A in training set T0547 279 :YSQFKNEKS 2bw4A 185 :VPKDEAGNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=93828 # 1wojA.279.71 read from T0547.t06.many.frag # found chain 1wojA in training set Warning: unaligning (T0547)Q281 (1wojA)Y239 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1wojA)G240 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1wojA)G244 because T (delta_L) conformation "forbidden" or filtered. T0547 279 :YS 1wojA 237 :CD T0547 283 :KNE 1wojA 241 :KAP T0547 287 :S 1wojA 245 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=93831 # 2bhuA.279.278 read from T0547.t06.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)K286 (2bhuA)T286 because E (beta_S) conformation "forbidden" or filtered. T0547 279 :YSQFKNE 2bhuA 279 :YMTDDSE T0547 287 :S 2bhuA 287 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=93833 # 1h80A.279.123 read from T0547.t06.many.frag # found chain 1h80A in training set Warning: unaligning (T0547)K286 (1h80A)N158 because N (gamma') conformation "forbidden" or filtered. T0547 279 :YSQFKNE 1h80A 151 :FKDSRDK T0547 287 :S 1h80A 159 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=93835 # 1puc.279.53 read from T0547.t06.many.frag # found chain 1puc in template set Warning: unaligning (T0547)E285 (1puc)G61 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1puc)L63 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YSQFKN 1puc 55 :YFNPET T0547 286 :K 1puc 62 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=93837 # 1tq5A.279.25 read from T0547.t06.many.frag # found chain 1tq5A in training set Warning: unaligning (T0547)S280 (1tq5A)A27 because S (epsilon) conformation "forbidden" or filtered. T0547 279 :Y 1tq5A 26 :F T0547 281 :QFKNEKS 1tq5A 28 :NYYDPNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=93839 # 2exrA.279.321 read from T0547.t06.many.frag # found chain 2exrA in training set T0547 279 :YSQFKNEKS 2exrA 322 :YRDSDSNST Number of specific fragments extracted= 1 number of extra gaps= 0 total=93840 # 2a40B.279.172 read from T0547.t06.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)Y279 (2a40B)C173 because S (epsilon) conformation "forbidden" or filtered. T0547 280 :SQFKNEKS 2a40B 174 :SYVTSSQW Number of specific fragments extracted= 1 number of extra gaps= 1 total=93841 # 2bjfA.279.88 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)F282 (2bjfA)E92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (2bjfA)G96 because T (delta_L) conformation "forbidden" or filtered. T0547 279 :YSQ 2bjfA 89 :YSK T0547 283 :KNE 2bjfA 93 :DIE T0547 287 :S 2bjfA 97 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=93844 # 1fviA.279.98 read from T0547.t06.many.frag # found chain 1fviA in template set Warning: unaligning (T0547)Q281 (1fviA)T102 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1fviA)K107 because P (beta_P) conformation "forbidden" or filtered. T0547 279 :YS 1fviA 100 :YV T0547 282 :FKNE 1fviA 103 :DDPL T0547 287 :S 1fviA 108 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=93847 # 1c6vX.279.14 read from T0547.t06.many.frag # found chain 1c6vX in template set Warning: unaligning (T0547)N284 (1c6vX)D232 because Y (epsilon') conformation "forbidden" or filtered. T0547 279 :YSQFK 1c6vX 227 :YREGR T0547 285 :EKS 1c6vX 233 :QLW Number of specific fragments extracted= 2 number of extra gaps= 1 total=93849 # 1onrA.280.264 read from T0547.t06.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)R288 (1onrA)A274 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQFKNEKS 1onrA 266 :TGEVKARP Number of specific fragments extracted= 1 number of extra gaps= 1 total=93850 # 4dpvZ.280.233 read from T0547.t06.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)Q281 (4dpvZ)G235 because Y (epsilon') conformation "forbidden" or filtered. T0547 280 :S 4dpvZ 234 :H T0547 282 :FKNEKSR 4dpvZ 236 :TDPDDVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=93852 # 1ro7A.280.155 read from T0547.t06.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)S280 (1ro7A)Y156 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1ro7A)G159 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1ro7A)F164 because Y (epsilon') conformation "forbidden" or filtered. T0547 281 :QF 1ro7A 157 :QN T0547 284 :NEKS 1ro7A 160 :SSYA Number of specific fragments extracted= 2 number of extra gaps= 3 total=93854 # 1e19A.280.244 read from T0547.t06.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)S280 (1e19A)G245 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1e19A)T246 because E (beta_S) conformation "forbidden" or filtered. T0547 282 :FKNEKSR 1e19A 247 :EKEQWLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=93855 # 4eugA.280.128 read from T0547.t06.many.frag # found chain 4eugA in template set Warning: unaligning (T0547)E285 (4eugA)H134 because T (delta_L) conformation "forbidden" or filtered. T0547 280 :SQFKN 4eugA 129 :RAGQA T0547 286 :KSR 4eugA 135 :SHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=93857 # 1zboA.280.71 read from T0547.t06.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)Q281 (1zboA)H73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1zboA)E75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1zboA)M78 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1zboA)P79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1zboA)A80 because T (delta_L) conformation "forbidden" or filtered. T0547 280 :S 1zboA 72 :D T0547 282 :F 1zboA 74 :W T0547 284 :NE 1zboA 76 :AP Number of specific fragments extracted= 3 number of extra gaps= 3 total=93860 # 1w8kA.280.63 read from T0547.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)Q281 (1w8kA)N105 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1w8kA)R112 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :S 1w8kA 104 :E T0547 282 :FKNEKS 1w8kA 106 :SDVSFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=93862 # 1zgmA.280.125 read from T0547.t06.many.frag # found chain 1zgmA in template set Warning: unaligning (T0547)S280 (1zgmA)L114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (1zgmA)N115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1zgmA)G117 because Y (epsilon') conformation "forbidden" or filtered. T0547 282 :F 1zgmA 116 :G T0547 284 :NEKSR 1zgmA 118 :REMWT Number of specific fragments extracted= 2 number of extra gaps= 2 total=93864 # 2bw4A.280.185 read from T0547.t06.many.frag # found chain 2bw4A in training set T0547 280 :SQFKNEKSR 2bw4A 186 :PKDEAGNYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=93865 # 1tq5A.280.26 read from T0547.t06.many.frag # found chain 1tq5A in training set Warning: unaligning (T0547)S280 (1tq5A)A27 because S (epsilon) conformation "forbidden" or filtered. T0547 281 :QFKNEKSR 1tq5A 28 :NYYDPNFM Number of specific fragments extracted= 1 number of extra gaps= 1 total=93866 # 2btoA.280.279 read from T0547.t06.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2btoA)E289 T0547 280 :SQF 2btoA 280 :TPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=93867 # 1fvkA.280.163 read from T0547.t06.many.frag # found chain 1fvkA in training set T0547 280 :SQFKNEKSR 1fvkA 164 :QGMDTSNMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=93868 # 1hdoA.280.116 read from T0547.t06.many.frag # found chain 1hdoA in training set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 T0547 280 :SQF 1hdoA 117 :DPT T0547 285 :EKSR 1hdoA 122 :PPRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=93870 # 1knwA.280.232 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K283 (1knwA)E236 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQF 1knwA 233 :QQG T0547 284 :NEKSR 1knwA 237 :EAVDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=93872 # 1puc.280.54 read from T0547.t06.many.frag # found chain 1puc in template set Warning: unaligning (T0547)S287 (1puc)L63 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQFKNEK 1puc 56 :FNPETGT T0547 288 :R 1puc 64 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=93874 # 1iv3A.280.60 read from T0547.t06.many.frag # found chain 1iv3A in training set Warning: unaligning (T0547)S287 (1iv3A)W68 because G (3-10) conformation "forbidden" or filtered. T0547 280 :SQFKNEK 1iv3A 61 :FPDTDPR T0547 288 :R 1iv3A 69 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=93876 # 1nar.280.270 read from T0547.t06.many.frag # found chain 1nar in training set Warning: unaligning (T0547)E285 (1nar)P276 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQFKN 1nar 271 :RDGDK T0547 286 :KSR 1nar 277 :FIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=93878 # 2bhuA.280.279 read from T0547.t06.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)N284 (2bhuA)S284 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQFK 2bhuA 280 :MTDD T0547 285 :EKSR 2bhuA 285 :ETHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=93880 # 2a40B.280.173 read from T0547.t06.many.frag # found chain 2a40B in training set T0547 280 :SQFKNEKSR 2a40B 174 :SYVTSSQWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=93881 # 1dfuP.280.30 read from T0547.t06.many.frag # found chain 1dfuP in training set Warning: unaligning (T0547)Q281 (1dfuP)G32 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F282 (1dfuP)G33 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1dfuP)P37 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :S 1dfuP 31 :Y T0547 283 :KNE 1dfuP 34 :KEA T0547 287 :SR 1dfuP 38 :LA Number of specific fragments extracted= 3 number of extra gaps= 2 total=93884 # 1nvmB.280.198 read from T0547.t06.many.frag # found chain 1nvmB in training set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1nvmB)P203 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1nvmB)P203 Warning: unaligning (T0547)R288 (1nvmB)M207 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQF 1nvmB 199 :NPA T0547 285 :EKS 1nvmB 204 :PLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=93886 # 1wpoA.280.23 read from T0547.t06.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wpoA)L33 T0547 280 :SQ 1wpoA 24 :DQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=93887 # 2bjfA.280.89 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)K286 (2bjfA)G96 because T (delta_L) conformation "forbidden" or filtered. T0547 280 :SQFKNE 2bjfA 90 :SKEDIE T0547 287 :SR 2bjfA 97 :KT Number of specific fragments extracted= 2 number of extra gaps= 1 total=93889 # 1k5cA.280.262 read from T0547.t06.many.frag # found chain 1k5cA in training set Warning: unaligning (T0547)S280 (1k5cA)P263 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1k5cA)G267 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1k5cA)N268 because L (left) conformation "forbidden" or filtered. T0547 281 :QFK 1k5cA 264 :DDV T0547 286 :KSR 1k5cA 269 :PGT Number of specific fragments extracted= 2 number of extra gaps= 2 total=93891 # 2anxA.280.40 read from T0547.t06.many.frag # found chain 2anxA in training set Warning: unaligning (T0547)S280 (2anxA)D41 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q281 (2anxA)G42 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (2anxA)A46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (2anxA)G48 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (2anxA)M49 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :FKN 2anxA 43 :NSV T0547 286 :K 2anxA 47 :S Number of specific fragments extracted= 2 number of extra gaps= 3 total=93893 # 1eyeA.280.135 read from T0547.t06.many.frag # found chain 1eyeA in template set T0547 280 :SQFKNEKSR 1eyeA 136 :SADTPHVPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=93894 # 1oqvA.280.156 read from T0547.t06.many.frag # found chain 1oqvA in training set Warning: unaligning (T0547)F282 (1oqvA)S166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1oqvA)A168 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQ 1oqvA 164 :IK T0547 283 :K 1oqvA 167 :I T0547 285 :EKSR 1oqvA 169 :PASK Number of specific fragments extracted= 3 number of extra gaps= 2 total=93897 # 1urjA.280.827 read from T0547.t06.many.frag # found chain 1urjA in template set Warning: unaligning (T0547)S280 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1urjA)P828 Warning: unaligning (T0547)N284 (1urjA)P832 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1urjA)G834 because T (delta_L) conformation "forbidden" or filtered. T0547 281 :QFK 1urjA 829 :NGK T0547 285 :E 1urjA 833 :P T0547 287 :SR 1urjA 835 :SN Number of specific fragments extracted= 3 number of extra gaps= 3 total=93900 # 1bouB.280.197 read from T0547.t06.many.frag # found chain 1bouB in template set Warning: unaligning (T0547)N284 (1bouB)A202 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1bouB)G203 because T (delta_L) conformation "forbidden" or filtered. T0547 280 :SQFK 1bouB 198 :QGPR T0547 286 :KSR 1bouB 204 :LIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=93902 # 1cvrA.280.150 read from T0547.t06.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)K286 (1cvrA)A157 because P (beta_P) conformation "forbidden" or filtered. T0547 280 :SQFKNE 1cvrA 151 :AEGGPS T0547 287 :SR 1cvrA 158 :DN Number of specific fragments extracted= 2 number of extra gaps= 1 total=93904 # 1onrA.281.265 read from T0547.t06.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)K283 (1onrA)V269 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1onrA)A271 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QF 1onrA 267 :GE T0547 284 :N 1onrA 270 :K T0547 286 :KSRN 1onrA 272 :RPAR Number of specific fragments extracted= 3 number of extra gaps= 2 total=93907 # 4dpvZ.281.234 read from T0547.t06.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)Q281 (4dpvZ)G235 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (4dpvZ)D240 because G (3-10) conformation "forbidden" or filtered. T0547 282 :FKNE 4dpvZ 236 :TDPD T0547 287 :SRN 4dpvZ 241 :VQF Number of specific fragments extracted= 2 number of extra gaps= 2 total=93909 # 1ro7A.281.156 read from T0547.t06.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)E285 (1ro7A)S161 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QFKN 1ro7A 157 :QNGS T0547 286 :KSRN 1ro7A 162 :YAFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=93911 # 1e19A.281.245 read from T0547.t06.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)K286 (1e19A)W251 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1e19A)E254 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QFKNE 1e19A 246 :TEKEQ T0547 287 :SR 1e19A 252 :LR Number of specific fragments extracted= 2 number of extra gaps= 2 total=93913 # 4eugA.281.129 read from T0547.t06.many.frag # found chain 4eugA in template set T0547 281 :QFKNEKSRN 4eugA 130 :AGQAHSHAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=93914 # 1zgmA.281.126 read from T0547.t06.many.frag # found chain 1zgmA in template set Warning: unaligning (T0547)F282 (1zgmA)G116 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1zgmA)G117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1zgmA)E119 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :Q 1zgmA 115 :N T0547 284 :N 1zgmA 118 :R T0547 286 :KSRN 1zgmA 120 :MWTP Number of specific fragments extracted= 3 number of extra gaps= 2 total=93917 # 2btoA.281.280 read from T0547.t06.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2btoA)E289 Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2btoA)E289 T0547 281 :QF 2btoA 281 :PP Number of specific fragments extracted= 1 number of extra gaps= 0 total=93918 # 1zboA.281.72 read from T0547.t06.many.frag # found chain 1zboA in template set Warning: unaligning (T0547)K283 (1zboA)E75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1zboA)A80 because T (delta_L) conformation "forbidden" or filtered. T0547 281 :QF 1zboA 73 :HW T0547 284 :NEKS 1zboA 76 :APMP T0547 289 :N 1zboA 81 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=93921 # 1tq5A.281.27 read from T0547.t06.many.frag # found chain 1tq5A in training set Warning: unaligning (T0547)N289 (1tq5A)G36 because Y (epsilon') conformation "forbidden" or filtered. T0547 281 :QFKNEKSR 1tq5A 28 :NYYDPNFM Number of specific fragments extracted= 1 number of extra gaps= 1 total=93922 # 1iv3A.281.61 read from T0547.t06.many.frag # found chain 1iv3A in training set Warning: unaligning (T0547)N284 (1iv3A)D65 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1iv3A)R69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1iv3A)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 281 :QFK 1iv3A 62 :PDT T0547 285 :EKS 1iv3A 66 :PRW Number of specific fragments extracted= 2 number of extra gaps= 2 total=93924 # 1w8kA.281.64 read from T0547.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)Q281 (1w8kA)N105 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1w8kA)V108 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1w8kA)S109 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :FK 1w8kA 106 :SD T0547 286 :KSRN 1w8kA 110 :FLRP Number of specific fragments extracted= 2 number of extra gaps= 2 total=93926 # 2bw4A.281.186 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bw4A)Y196 T0547 281 :QFKNEKSR 2bw4A 187 :KDEAGNYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=93927 # 1puc.281.55 read from T0547.t06.many.frag # found chain 1puc in template set Warning: unaligning (T0547)Q281 (1puc)N57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1puc)R64 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :FKNEKS 1puc 58 :PETGTL T0547 289 :N 1puc 65 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=93929 # 1urjA.281.828 read from T0547.t06.many.frag # found chain 1urjA in template set Warning: unaligning (T0547)K283 (1urjA)K831 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1urjA)P832 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1urjA)G834 because T (delta_L) conformation "forbidden" or filtered. T0547 281 :QF 1urjA 829 :NG T0547 285 :E 1urjA 833 :P T0547 287 :SRN 1urjA 835 :SNQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=93932 # 1cvrA.281.151 read from T0547.t06.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)F282 (1cvrA)G153 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1cvrA)N159 because L (left) conformation "forbidden" or filtered. T0547 281 :Q 1cvrA 152 :E T0547 283 :KNEKS 1cvrA 154 :GPSAD T0547 289 :N 1cvrA 160 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=93935 # 1eyeA.281.136 read from T0547.t06.many.frag # found chain 1eyeA in template set T0547 281 :QFKNEKSRN 1eyeA 137 :ADTPHVPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=93936 # 2anxA.281.41 read from T0547.t06.many.frag # found chain 2anxA in training set Warning: unaligning (T0547)Q281 (2anxA)G42 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (2anxA)S44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (2anxA)A46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (2anxA)G48 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (2anxA)M49 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :F 2anxA 43 :N T0547 284 :N 2anxA 45 :V T0547 286 :K 2anxA 47 :S T0547 289 :N 2anxA 50 :T Number of specific fragments extracted= 4 number of extra gaps= 4 total=93940 # 1x89A.281.12 read from T0547.t06.many.frag # found chain 1x89A in template set T0547 281 :QFKNEKSRN 1x89A 13 :LSKVPLQQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=93941 # 1qo7A.281.152 read from T0547.t06.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)Q281 (1qo7A)S155 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N284 (1qo7A)P158 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1qo7A)D161 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1qo7A)K162 because Y (epsilon') conformation "forbidden" or filtered. T0547 282 :FK 1qo7A 156 :SG T0547 285 :EK 1qo7A 159 :PL T0547 289 :N 1qo7A 163 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=93944 # 1pcxA.281.720 read from T0547.t06.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)K286 (1pcxA)V842 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QFKNE 1pcxA 837 :KQEIP T0547 287 :SRN 1pcxA 843 :VEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=93946 # 2bjfA.281.90 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)E285 (2bjfA)E95 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QFKN 2bjfA 91 :KEDI T0547 286 :KSRN 2bjfA 96 :GKTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=93948 # 2a40B.281.174 read from T0547.t06.many.frag # found chain 2a40B in training set T0547 281 :QFKNEKSRN 2a40B 175 :YVTSSQWSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=93949 # 1hdoA.281.117 read from T0547.t06.many.frag # found chain 1hdoA in training set Warning: unaligning (T0547)K283 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0547)N284 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 T0547 281 :QF 1hdoA 118 :PT T0547 285 :EKSRN 1hdoA 122 :PPRLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=93951 # 1r5lA.281.104 read from T0547.t06.many.frag # found chain 1r5lA in training set T0547 281 :QFKNEKSRN 1r5lA 121 :HWDPKVFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=93952 # 1oqvA.281.157 read from T0547.t06.many.frag # found chain 1oqvA in training set T0547 281 :QFKNEKSRN 1oqvA 165 :KSIAPASKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=93953 # 1wpoA.281.24 read from T0547.t06.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)F282 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wpoA)L33 Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wpoA)L33 T0547 281 :Q 1wpoA 25 :Q Number of specific fragments extracted= 1 number of extra gaps= 0 total=93954 # 1k5cA.281.263 read from T0547.t06.many.frag # found chain 1k5cA in training set Warning: unaligning (T0547)K283 (1k5cA)V266 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1k5cA)N268 because L (left) conformation "forbidden" or filtered. T0547 281 :QF 1k5cA 264 :DD T0547 284 :N 1k5cA 267 :G T0547 286 :KSRN 1k5cA 269 :PGTG Number of specific fragments extracted= 3 number of extra gaps= 2 total=93957 # 1uuhA.281.72 read from T0547.t06.many.frag # found chain 1uuhA in template set Warning: unaligning (T0547)S287 (1uuhA)A98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1uuhA)A99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1uuhA)N100 because T (delta_L) conformation "forbidden" or filtered. T0547 281 :QFKNEK 1uuhA 92 :HPNSIC Number of specific fragments extracted= 1 number of extra gaps= 1 total=93958 # 1w0hA.281.22 read from T0547.t06.many.frag # found chain 1w0hA in training set Warning: unaligning (T0547)F282 (1w0hA)G142 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1w0hA)H149 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :Q 1w0hA 141 :E T0547 283 :KNEKSR 1w0hA 143 :NPPEFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=93960 # 1v84A.281.231 read from T0547.t06.many.frag # found chain 1v84A in template set Warning: unaligning (T0547)K283 (1v84A)E315 because P (beta_P) conformation "forbidden" or filtered. T0547 281 :QF 1v84A 313 :RT T0547 284 :NEKSRN 1v84A 316 :KPVLVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=93962 # 1onrA.282.266 read from T0547.t06.many.frag # found chain 1onrA in template set T0547 282 :FKNEKSRNY 1onrA 268 :EVKARPARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=93963 # 1e19A.282.246 read from T0547.t06.many.frag # found chain 1e19A in training set T0547 282 :FKNEKSRNY 1e19A 247 :EKEQWLREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=93964 # 4eugA.282.130 read from T0547.t06.many.frag # found chain 4eugA in template set Warning: unaligning (T0547)E285 (4eugA)H134 because T (delta_L) conformation "forbidden" or filtered. T0547 282 :FKN 4eugA 131 :GQA T0547 286 :KSRNY 4eugA 135 :SHASL Number of specific fragments extracted= 2 number of extra gaps= 1 total=93966 # 1ro7A.282.157 read from T0547.t06.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)F282 (1ro7A)N158 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K283 (1ro7A)G159 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1ro7A)F164 because Y (epsilon') conformation "forbidden" or filtered. T0547 284 :NEKS 1ro7A 160 :SSYA T0547 289 :NY 1ro7A 165 :DT Number of specific fragments extracted= 2 number of extra gaps= 2 total=93968 # 4dpvZ.282.235 read from T0547.t06.many.frag # found chain 4dpvZ in template set T0547 282 :FKNEKSRNY 4dpvZ 236 :TDPDDVQFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=93969 # 1iv3A.282.62 read from T0547.t06.many.frag # found chain 1iv3A in training set T0547 282 :FKNEKSRNY 1iv3A 63 :DTDPRWRGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=93970 # 2btoA.282.281 read from T0547.t06.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2btoA)E289 Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2btoA)E289 T0547 282 :F 2btoA 282 :P T0547 290 :Y 2btoA 290 :L Number of specific fragments extracted= 2 number of extra gaps= 0 total=93972 # 1zgmA.282.127 read from T0547.t06.many.frag # found chain 1zgmA in template set Warning: unaligning (T0547)K283 (1zgmA)G117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1zgmA)E119 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :F 1zgmA 116 :G T0547 284 :N 1zgmA 118 :R T0547 286 :KSRNY 1zgmA 120 :MWTPE Number of specific fragments extracted= 3 number of extra gaps= 2 total=93975 # 1tq5A.282.28 read from T0547.t06.many.frag # found chain 1tq5A in training set Warning: unaligning (T0547)N289 (1tq5A)G36 because Y (epsilon') conformation "forbidden" or filtered. T0547 282 :FKNEKSR 1tq5A 29 :YYDPNFM T0547 290 :Y 1tq5A 37 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=93977 # 1x89A.282.13 read from T0547.t06.many.frag # found chain 1x89A in template set T0547 282 :FKNEKSRNY 1x89A 14 :SKVPLQQNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=93978 # 1puc.282.56 read from T0547.t06.many.frag # found chain 1puc in template set Warning: unaligning (T0547)E285 (1puc)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 282 :FKN 1puc 58 :PET T0547 286 :KSRNY 1puc 62 :TLRIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=93980 # 2bw4A.282.187 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)R288 (2bw4A)K194 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bw4A)Y196 Warning: unaligning (T0547)Y290 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bw4A)Y196 T0547 282 :FKNEKS 2bw4A 188 :DEAGNY Number of specific fragments extracted= 1 number of extra gaps= 1 total=93981 # 1pcxA.282.721 read from T0547.t06.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)N289 (1pcxA)N845 because L (left) conformation "forbidden" or filtered. T0547 282 :FKNEKSR 1pcxA 838 :QEIPVVE T0547 290 :Y 1pcxA 846 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=93983 # 1urjA.282.829 read from T0547.t06.many.frag # found chain 1urjA in template set Warning: unaligning (T0547)K286 (1urjA)G834 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1urjA)N836 because G (3-10) conformation "forbidden" or filtered. T0547 282 :FKNE 1urjA 830 :GKPP T0547 287 :S 1urjA 835 :S T0547 289 :NY 1urjA 837 :QP Number of specific fragments extracted= 3 number of extra gaps= 2 total=93986 # 1cvrA.282.152 read from T0547.t06.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)K283 (1cvrA)G154 because Y (epsilon') conformation "forbidden" or filtered. T0547 282 :F 1cvrA 153 :G T0547 284 :NEKSRNY 1cvrA 155 :PSADNGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=93988 # 1qo7A.282.153 read from T0547.t06.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)N284 (1qo7A)P158 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1qo7A)D161 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1qo7A)K162 because Y (epsilon') conformation "forbidden" or filtered. T0547 282 :FK 1qo7A 156 :SG T0547 285 :EK 1qo7A 159 :PL T0547 289 :NY 1qo7A 163 :DF Number of specific fragments extracted= 3 number of extra gaps= 2 total=93991 # 1k5cA.282.264 read from T0547.t06.many.frag # found chain 1k5cA in training set Warning: unaligning (T0547)E285 (1k5cA)N268 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1k5cA)P269 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :FKN 1k5cA 265 :DVG T0547 287 :SRNY 1k5cA 270 :GTGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=93993 # 1ofcX.282.209 read from T0547.t06.many.frag # found chain 1ofcX in template set Warning: unaligning (T0547)N284 (1ofcX)G899 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE in next template residue (1ofcX)N901 Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE at template residue (1ofcX)N901 T0547 282 :FK 1ofcX 897 :NK T0547 287 :SRNY 1ofcX 902 :YTEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=93995 # 2a40B.282.175 read from T0547.t06.many.frag # found chain 2a40B in training set T0547 282 :FKNEKSRNY 2a40B 176 :VTSSQWSSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=93996 # 1xkrA.282.94 read from T0547.t06.many.frag # found chain 1xkrA in training set T0547 282 :FKNEKSRNY 1xkrA 94 :RAPDNLLNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=93997 # 2bjfA.282.91 read from T0547.t06.many.frag # found chain 2bjfA in training set T0547 282 :FKNEKSRNY 2bjfA 92 :EDIEGKTNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=93998 # 1r5lA.282.105 read from T0547.t06.many.frag # found chain 1r5lA in training set T0547 282 :FKNEKSRNY 1r5lA 122 :WDPKVFTAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=93999 # 1eyeA.282.137 read from T0547.t06.many.frag # found chain 1eyeA in template set T0547 282 :FKNEKSRNY 1eyeA 138 :DTPHVPVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94000 # 2anxA.282.42 read from T0547.t06.many.frag # found chain 2anxA in training set Warning: unaligning (T0547)S287 (2anxA)G48 because T (delta_L) conformation "forbidden" or filtered. T0547 282 :FKNEK 2anxA 43 :NSVAS T0547 288 :RNY 2anxA 49 :MTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=94002 # 1oqvA.282.158 read from T0547.t06.many.frag # found chain 1oqvA in training set Warning: unaligning (T0547)N284 (1oqvA)A168 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1oqvA)N173 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE in next template residue (1oqvA)D175 T0547 282 :FK 1oqvA 166 :SI T0547 285 :EKSR 1oqvA 169 :PASK Number of specific fragments extracted= 2 number of extra gaps= 2 total=94004 # 1uuhA.282.73 read from T0547.t06.many.frag # found chain 1uuhA in template set Warning: unaligning (T0547)K286 (1uuhA)C97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1uuhA)A98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1uuhA)A99 because L (left) conformation "forbidden" or filtered. T0547 282 :FKNE 1uuhA 93 :PNSI T0547 289 :NY 1uuhA 100 :NN Number of specific fragments extracted= 2 number of extra gaps= 1 total=94006 # 1w8kA.282.65 read from T0547.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)K283 (1w8kA)D107 because G (3-10) conformation "forbidden" or filtered. T0547 282 :F 1w8kA 106 :S T0547 284 :NEKSRNY 1w8kA 108 :VSFLRPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=94008 # 1vpmA.282.32 read from T0547.t06.many.frag # found chain 1vpmA in training set Warning: unaligning (T0547)E285 (1vpmA)N24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1vpmA)G27 because T (delta_L) conformation "forbidden" or filtered. T0547 282 :FKN 1vpmA 21 :PDT T0547 286 :KS 1vpmA 25 :HL T0547 289 :NY 1vpmA 28 :TI Number of specific fragments extracted= 3 number of extra gaps= 2 total=94011 1rwtA expands to /projects/compbio/data/pdb/1rwt.pdb.gz 1rwtA:# 1rwtA.282.113 read from T0547.t06.many.frag # adding 1rwtA to template set # found chain 1rwtA in template set Warning: unaligning (T0547)K286 (1rwtA)L118 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1rwtA)V119 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1rwtA)H120 because L (left) conformation "forbidden" or filtered. T0547 282 :FKNE 1rwtA 114 :GNPS T0547 289 :NY 1rwtA 121 :AQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=94013 # 1iuqA.282.240 read from T0547.t06.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)N284 (1iuqA)E244 because P (beta_P) conformation "forbidden" or filtered. T0547 282 :FK 1iuqA 242 :TG T0547 285 :EKSRNY 1iuqA 245 :WYPAPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=94015 # 1iv3A.283.63 read from T0547.t06.many.frag # found chain 1iv3A in training set T0547 283 :KNEKSRNYT 1iv3A 64 :TDPRWRGER Number of specific fragments extracted= 1 number of extra gaps= 0 total=94016 # 4eugA.283.131 read from T0547.t06.many.frag # found chain 4eugA in template set Warning: unaligning (T0547)T291 (4eugA)G140 because T (delta_L) conformation "forbidden" or filtered. T0547 283 :KNEKSRNY 4eugA 132 :QAHSHASL Number of specific fragments extracted= 1 number of extra gaps= 1 total=94017 # 1onrA.283.267 read from T0547.t06.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)E285 (1onrA)A271 because P (beta_P) conformation "forbidden" or filtered. T0547 283 :KN 1onrA 269 :VK T0547 286 :KSRNYT 1onrA 272 :RPARIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=94019 # 1e19A.283.247 read from T0547.t06.many.frag # found chain 1e19A in training set T0547 283 :KNEKSRNYT 1e19A 248 :KEQWLREVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94020 # 4dpvZ.283.236 read from T0547.t06.many.frag # found chain 4dpvZ in template set Warning: unaligning (T0547)S287 (4dpvZ)V241 because P (beta_P) conformation "forbidden" or filtered. T0547 283 :KNEK 4dpvZ 237 :DPDD T0547 288 :RNYT 4dpvZ 242 :QFYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=94022 # 2btoA.283.282 read from T0547.t06.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)K283 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2btoA)E289 Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2btoA)E289 T0547 290 :YT 2btoA 290 :LG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94023 # 1ro7A.283.158 read from T0547.t06.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)K283 (1ro7A)G159 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1ro7A)Y162 because Y (epsilon') conformation "forbidden" or filtered. T0547 284 :NE 1ro7A 160 :SS T0547 287 :SRNYT 1ro7A 163 :AFDTK Number of specific fragments extracted= 2 number of extra gaps= 2 total=94025 # 1x89A.283.14 read from T0547.t06.many.frag # found chain 1x89A in template set T0547 283 :KNEKSRNYT 1x89A 15 :KVPLQQNFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94026 # 1zgmA.283.128 read from T0547.t06.many.frag # found chain 1zgmA in template set Warning: unaligning (T0547)K283 (1zgmA)G117 because Y (epsilon') conformation "forbidden" or filtered. T0547 284 :NEKSRNYT 1zgmA 118 :REMWTPEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=94027 # 1cvrA.283.153 read from T0547.t06.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)S287 (1cvrA)D158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1cvrA)N159 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1cvrA)G160 because L (left) conformation "forbidden" or filtered. T0547 283 :KNEK 1cvrA 154 :GPSA T0547 290 :YT 1cvrA 161 :ES Number of specific fragments extracted= 2 number of extra gaps= 1 total=94029 # 1pcxA.283.722 read from T0547.t06.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)E285 (1pcxA)P841 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1pcxA)V842 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1pcxA)N845 because L (left) conformation "forbidden" or filtered. T0547 283 :KN 1pcxA 839 :EI T0547 287 :SR 1pcxA 843 :VE T0547 290 :YT 1pcxA 846 :SE Number of specific fragments extracted= 3 number of extra gaps= 2 total=94032 # 1puc.283.57 read from T0547.t06.many.frag # found chain 1puc in template set Warning: unaligning (T0547)R288 (1puc)R64 because P (beta_P) conformation "forbidden" or filtered. T0547 283 :KNEKS 1puc 59 :ETGTL T0547 289 :NYT 1puc 65 :ILQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=94034 # 1urjA.283.830 read from T0547.t06.many.frag # found chain 1urjA in template set Warning: unaligning (T0547)N284 (1urjA)P832 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1urjA)G834 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1urjA)N836 because G (3-10) conformation "forbidden" or filtered. T0547 283 :K 1urjA 831 :K T0547 285 :E 1urjA 833 :P T0547 287 :S 1urjA 835 :S T0547 289 :NYT 1urjA 837 :QPN Number of specific fragments extracted= 4 number of extra gaps= 3 total=94038 # 1qo7A.283.154 read from T0547.t06.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)N284 (1qo7A)P158 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1qo7A)K162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1qo7A)D163 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T291 (1qo7A)G165 because Y (epsilon') conformation "forbidden" or filtered. T0547 283 :K 1qo7A 157 :G T0547 285 :EKS 1qo7A 159 :PLD T0547 290 :Y 1qo7A 164 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=94041 # 1tq5A.283.29 read from T0547.t06.many.frag # found chain 1tq5A in training set Warning: unaligning (T0547)K283 (1tq5A)Y30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1tq5A)G36 because Y (epsilon') conformation "forbidden" or filtered. T0547 284 :NEKSR 1tq5A 31 :DPNFM T0547 290 :YT 1tq5A 37 :FS Number of specific fragments extracted= 2 number of extra gaps= 2 total=94043 # 1ofcX.283.210 read from T0547.t06.many.frag # found chain 1ofcX in template set Warning: unaligning (T0547)N284 (1ofcX)G899 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE in next template residue (1ofcX)N901 Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE at template residue (1ofcX)N901 T0547 283 :K 1ofcX 898 :K T0547 287 :SRNYT 1ofcX 902 :YTEIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=94045 # 1r5lA.283.106 read from T0547.t06.many.frag # found chain 1r5lA in training set T0547 283 :KNEKSRNYT 1r5lA 123 :DPKVFTAYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94046 # 2bw4A.283.188 read from T0547.t06.many.frag # found chain 2bw4A in training set Warning: unaligning (T0547)E285 (2bw4A)G191 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (2bw4A)Y193 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bw4A)Y196 Warning: unaligning (T0547)Y290 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bw4A)Y196 T0547 283 :KN 2bw4A 189 :EA T0547 286 :K 2bw4A 192 :N T0547 288 :R 2bw4A 194 :K T0547 291 :T 2bw4A 197 :E Number of specific fragments extracted= 4 number of extra gaps= 3 total=94050 # 1k5cA.283.265 read from T0547.t06.many.frag # found chain 1k5cA in training set Warning: unaligning (T0547)S287 (1k5cA)G270 because P (beta_P) conformation "forbidden" or filtered. T0547 283 :KNEK 1k5cA 266 :VGNP T0547 288 :RNYT 1k5cA 271 :TGAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=94052 # 2a40B.283.176 read from T0547.t06.many.frag # found chain 2a40B in training set Warning: unaligning (T0547)K283 (2a40B)T177 because P (beta_P) conformation "forbidden" or filtered. T0547 284 :NEKSRNYT 2a40B 178 :SSQWSSIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=94053 # 1e58A.283.143 read from T0547.t06.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)N289 (1e58A)T150 because Y (epsilon') conformation "forbidden" or filtered. T0547 283 :KNEKSR 1e58A 144 :EKELPL T0547 290 :YT 1e58A 151 :ES Number of specific fragments extracted= 2 number of extra gaps= 1 total=94055 # 2anxA.283.43 read from T0547.t06.many.frag # found chain 2anxA in training set Warning: unaligning (T0547)E285 (2anxA)A46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (2anxA)M49 because P (beta_P) conformation "forbidden" or filtered. T0547 283 :KN 2anxA 44 :SV T0547 286 :KS 2anxA 47 :SG T0547 289 :NYT 2anxA 50 :TIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=94058 # 1vpmA.283.33 read from T0547.t06.many.frag # found chain 1vpmA in training set Warning: unaligning (T0547)S287 (1vpmA)L26 because G (3-10) conformation "forbidden" or filtered. T0547 283 :KNEK 1vpmA 22 :DTNH T0547 288 :RNYT 1vpmA 27 :GTIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=94060 # 1nuuA.283.192 read from T0547.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0547)E285 (1nuuA)P195 because N (gamma') conformation "forbidden" or filtered. T0547 283 :KN 1nuuA 193 :KE T0547 286 :KSRNYT 1nuuA 196 :VQNEIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=94062 # 1rwtA.283.114 read from T0547.t06.many.frag # found chain 1rwtA in template set Warning: unaligning (T0547)K283 (1rwtA)N115 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1rwtA)H120 because L (left) conformation "forbidden" or filtered. T0547 284 :NEKS 1rwtA 116 :PSLV T0547 289 :NYT 1rwtA 121 :AQS Number of specific fragments extracted= 2 number of extra gaps= 2 total=94064 1ogiA expands to /projects/compbio/data/pdb/1ogi.pdb.gz 1ogiA:# 1ogiA.283.226 read from T0547.t06.many.frag # adding 1ogiA to template set # found chain 1ogiA in template set Warning: unaligning (T0547)S287 (1ogiA)G231 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1ogiA)R233 because P (beta_P) conformation "forbidden" or filtered. T0547 283 :KNEK 1ogiA 227 :KNPQ T0547 288 :R 1ogiA 232 :G T0547 290 :YT 1ogiA 234 :MY Number of specific fragments extracted= 3 number of extra gaps= 2 total=94067 # 1u20A.283.13 read from T0547.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)K283 because first residue in template chain is (1u20A)D14 T0547 284 :NEKSRNYT 1u20A 15 :KPRPRNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94068 # 1wnyA.283.150 read from T0547.t06.many.frag # found chain 1wnyA in training set Warning: unaligning (T0547)K286 (1wnyA)P353 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1wnyA)G356 because T (delta_L) conformation "forbidden" or filtered. T0547 283 :KNE 1wnyA 350 :LVE T0547 287 :SR 1wnyA 354 :FK T0547 290 :YT 1wnyA 357 :LY Number of specific fragments extracted= 3 number of extra gaps= 2 total=94071 # 1uarA.283.208 read from T0547.t06.many.frag # found chain 1uarA in training set Warning: unaligning (T0547)K283 (1uarA)V209 because E (beta_S) conformation "forbidden" or filtered. T0547 284 :NEKSRNYT 1uarA 210 :NPDGTFKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=94072 # 1vh4A.283.46 read from T0547.t06.many.frag # found chain 1vh4A in training set Warning: unaligning (T0547)N289 (1vh4A)Y51 because G (3-10) conformation "forbidden" or filtered. T0547 283 :KNEKSR 1vh4A 45 :KHENWK T0547 290 :YT 1vh4A 52 :TP Number of specific fragments extracted= 2 number of extra gaps= 1 total=94074 # 4eugA.284.132 read from T0547.t06.many.frag # found chain 4eugA in template set Warning: unaligning (T0547)E285 (4eugA)H134 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (4eugA)H136 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T291 (4eugA)G140 because T (delta_L) conformation "forbidden" or filtered. T0547 284 :N 4eugA 133 :A T0547 286 :K 4eugA 135 :S T0547 288 :RNY 4eugA 137 :ASL T0547 292 :L 4eugA 141 :W Number of specific fragments extracted= 4 number of extra gaps= 3 total=94078 # 1iv3A.284.64 read from T0547.t06.many.frag # found chain 1iv3A in training set Warning: unaligning (T0547)R288 (1iv3A)R69 because P (beta_P) conformation "forbidden" or filtered. T0547 284 :NEKS 1iv3A 65 :DPRW T0547 289 :NYTL 1iv3A 70 :GERS Number of specific fragments extracted= 2 number of extra gaps= 1 total=94080 # 1x89A.284.15 read from T0547.t06.many.frag # found chain 1x89A in template set Warning: unaligning (T0547)E285 (1x89A)P17 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1x89A)N21 because L (left) conformation "forbidden" or filtered. T0547 284 :N 1x89A 16 :V T0547 286 :KSR 1x89A 18 :LQQ T0547 290 :YTL 1x89A 22 :FQD Number of specific fragments extracted= 3 number of extra gaps= 2 total=94083 # 1e19A.284.248 read from T0547.t06.many.frag # found chain 1e19A in training set T0547 284 :NEKSRNYTL 1e19A 249 :EQWLREVKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94084 # 4dpvZ.284.237 read from T0547.t06.many.frag # found chain 4dpvZ in template set T0547 284 :NEKSRNYTL 4dpvZ 238 :PDDVQFYTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94085 # 1k8qA.284.114 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)N284 (1k8qA)S115 because P (beta_P) conformation "forbidden" or filtered. T0547 285 :EKSRNYTL 1k8qA 116 :VEFWAFSF Number of specific fragments extracted= 1 number of extra gaps= 1 total=94086 # 1cvrA.284.154 read from T0547.t06.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)N289 (1cvrA)G160 because L (left) conformation "forbidden" or filtered. T0547 284 :NEKSR 1cvrA 155 :PSADN T0547 290 :YTL 1cvrA 161 :ESD Number of specific fragments extracted= 2 number of extra gaps= 1 total=94088 # 2btoA.284.283 read from T0547.t06.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2btoA)E289 T0547 290 :YTL 2btoA 290 :LGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94089 # 1zgmA.284.129 read from T0547.t06.many.frag # found chain 1zgmA in template set T0547 284 :NEKSRNYTL 1zgmA 118 :REMWTPEKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=94090 # 1pcxA.284.723 read from T0547.t06.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)E285 (1pcxA)P841 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1pcxA)E844 because P (beta_P) conformation "forbidden" or filtered. T0547 284 :N 1pcxA 840 :I T0547 286 :KS 1pcxA 842 :VV T0547 289 :NYTL 1pcxA 845 :NSEF Number of specific fragments extracted= 3 number of extra gaps= 2 total=94093 # 1onrA.284.268 read from T0547.t06.many.frag # found chain 1onrA in template set Warning: unaligning (T0547)K286 (1onrA)R272 because P (beta_P) conformation "forbidden" or filtered. T0547 284 :NE 1onrA 270 :KA T0547 287 :SRNYTL 1onrA 273 :PARITE Number of specific fragments extracted= 2 number of extra gaps= 1 total=94095 # 2amdA.284.50 read from T0547.t06.many.frag # found chain 2amdA in template set T0547 284 :NEKSRNYTL 2amdA 46 :AEDMLNPNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94096 # 1e58A.284.144 read from T0547.t06.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)N289 (1e58A)T150 because Y (epsilon') conformation "forbidden" or filtered. T0547 284 :NEKSR 1e58A 145 :KELPL T0547 290 :YTL 1e58A 151 :ESL Number of specific fragments extracted= 2 number of extra gaps= 1 total=94098 # 1u20A.284.14 read from T0547.t06.many.frag # found chain 1u20A in template set T0547 284 :NEKSRNYTL 1u20A 15 :KPRPRNISR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94099 # 1wnyA.284.151 read from T0547.t06.many.frag # found chain 1wnyA in training set Warning: unaligning (T0547)K286 (1wnyA)P353 because C (cis) conformation "forbidden" or filtered. T0547 284 :NE 1wnyA 351 :VE T0547 287 :SRNYTL 1wnyA 354 :FKGLYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=94101 # 1r5lA.284.107 read from T0547.t06.many.frag # found chain 1r5lA in training set Warning: unaligning (T0547)K286 (1r5lA)V126 because G (3-10) conformation "forbidden" or filtered. T0547 284 :NE 1r5lA 124 :PK T0547 287 :SRNYTL 1r5lA 127 :FTAYDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=94103 # 1qo7A.284.155 read from T0547.t06.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)N284 (1qo7A)P158 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 (1qo7A)P159 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1qo7A)D163 because P (beta_P) conformation "forbidden" or filtered. T0547 286 :KSR 1qo7A 160 :LDK T0547 290 :YTL 1qo7A 164 :FGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=94105 # 1ycdA.284.77 read from T0547.t06.many.frag # found chain 1ycdA in training set T0547 284 :NEKSRNYTL 1ycdA 78 :SEISHELDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94106 # 1h6pA.284.163 read from T0547.t06.many.frag # found chain 1h6pA in template set Warning: unaligning (T0547)K286 (1h6pA)V208 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1h6pA)I209 because T (delta_L) conformation "forbidden" or filtered. T0547 284 :NE 1h6pA 206 :HP T0547 288 :RNYTL 1h6pA 210 :QNFSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=94108 # 1nuuA.284.193 read from T0547.t06.many.frag # found chain 1nuuA in template set T0547 284 :NEKSRNYTL 1nuuA 194 :EPVQNEISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94109 # 1urjA.284.831 read from T0547.t06.many.frag # found chain 1urjA in template set T0547 284 :NEKSRNYTL 1urjA 832 :PPGSNQPNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=94110 # 1ro7A.284.159 read from T0547.t06.many.frag # found chain 1ro7A in training set Warning: unaligning (T0547)K286 (1ro7A)Y162 because Y (epsilon') conformation "forbidden" or filtered. T0547 284 :NE 1ro7A 160 :SS T0547 287 :SRNYTL 1ro7A 163 :AFDTKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=94112 # 1lkkA.284.4 read from T0547.t06.many.frag # found chain 1lkkA in training set T0547 284 :NEKSRNYTL 1lkkA 126 :PWFFKNLSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94113 # 1bu8A.284.241 read from T0547.t06.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)N284 (1bu8A)N240 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E285 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1bu8A)L242 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1bu8A)L242 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)S243 Warning: unaligning (T0547)R288 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (1bu8A)T244 Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bu8A)I245 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)V246 Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE in next template residue (1bu8A)I248 Warning: unaligning (T0547)L292 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)I248 Number of specific fragments extracted= 0 number of extra gaps= 1 total=94113 # 1p0yA.284.156 read from T0547.t06.many.frag # found chain 1p0yA in template set T0547 284 :NEKSRNYTL 1p0yA 201 :RLFPDPVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94114 # 2anxA.284.44 read from T0547.t06.many.frag # found chain 2anxA in training set Warning: unaligning (T0547)S287 (2anxA)G48 because T (delta_L) conformation "forbidden" or filtered. T0547 284 :NEK 2anxA 45 :VAS T0547 288 :RNYTL 2anxA 49 :MTITA Number of specific fragments extracted= 2 number of extra gaps= 1 total=94116 # 1dk0A.284.7 read from T0547.t06.many.frag # found chain 1dk0A in training set T0547 284 :NEKSRNYTL 1dk0A 8 :DSSFGGYSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94117 # 1vqoB.284.113 read from T0547.t06.many.frag # found chain 1vqoB in template set Warning: unaligning (T0547)E285 (1vqoB)D114 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)S287 (1vqoB)P116 because P (beta_P) conformation "forbidden" or filtered. T0547 284 :N 1vqoB 113 :L T0547 286 :K 1vqoB 115 :V T0547 288 :RNYTL 1vqoB 117 :EDHDP Number of specific fragments extracted= 3 number of extra gaps= 2 total=94120 # 1iu8A.284.173 read from T0547.t06.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)K286 (1iu8A)N176 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1iu8A)S179 because Y (epsilon') conformation "forbidden" or filtered. T0547 284 :NE 1iu8A 174 :KK T0547 287 :SR 1iu8A 177 :TP T0547 290 :YTL 1iu8A 180 :MSL Number of specific fragments extracted= 3 number of extra gaps= 2 total=94123 # 1ofcX.284.211 read from T0547.t06.many.frag # found chain 1ofcX in template set Warning: unaligning (T0547)E285 because of BadResidue code BAD_PEPTIDE in next template residue (1ofcX)N901 Warning: unaligning (T0547)K286 because of BadResidue code BAD_PEPTIDE at template residue (1ofcX)N901 T0547 284 :N 1ofcX 899 :G T0547 287 :SRNYTL 1ofcX 902 :YTEIED Number of specific fragments extracted= 2 number of extra gaps= 1 total=94125 # 4eugA.285.133 read from T0547.t06.many.frag # found chain 4eugA in template set Warning: unaligning (T0547)E285 (4eugA)H134 because T (delta_L) conformation "forbidden" or filtered. T0547 286 :KSRNYTLR 4eugA 135 :SHASLGWE Number of specific fragments extracted= 1 number of extra gaps= 1 total=94126 # 1iv3A.285.65 read from T0547.t06.many.frag # found chain 1iv3A in training set T0547 285 :EKSRNYTLR 1iv3A 66 :PRWRGERSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94127 # 1x89A.285.16 read from T0547.t06.many.frag # found chain 1x89A in template set T0547 285 :EKSRNYTLR 1x89A 17 :PLQQNFQDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94128 # 2amdA.285.51 read from T0547.t06.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)K286 (2amdA)D48 because N (gamma') conformation "forbidden" or filtered. T0547 285 :E 2amdA 47 :E T0547 287 :SRNYTLR 2amdA 49 :MLNPNYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=94130 # 2b4vA.285.336 read from T0547.t06.many.frag # found chain 2b4vA in training set Warning: unaligning (T0547)K286 (2b4vA)P357 because P (beta_P) conformation "forbidden" or filtered. T0547 285 :E 2b4vA 356 :S T0547 287 :SRNYTLR 2b4vA 358 :LYDCDPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=94132 # 1ycdA.285.78 read from T0547.t06.many.frag # found chain 1ycdA in training set T0547 285 :EKSRNYTLR 1ycdA 79 :EISHELDIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94133 # 1h6pA.285.164 read from T0547.t06.many.frag # found chain 1h6pA in template set Warning: unaligning (T0547)S287 (1h6pA)I209 because T (delta_L) conformation "forbidden" or filtered. T0547 285 :EK 1h6pA 207 :PV T0547 288 :RNYTLR 1h6pA 210 :QNFSYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=94135 # 1cvrA.285.155 read from T0547.t06.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)R288 (1cvrA)N159 because L (left) conformation "forbidden" or filtered. T0547 285 :EKS 1cvrA 156 :SAD T0547 289 :NYTLR 1cvrA 160 :GESDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=94137 # 1u20A.285.15 read from T0547.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)E285 (1u20A)P16 because P (beta_P) conformation "forbidden" or filtered. T0547 286 :KSRNYTLR 1u20A 17 :RPRNISRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=94138 # 1kt6A.285.9 read from T0547.t06.many.frag # found chain 1kt6A in training set Warning: unaligning (T0547)S287 (1kt6A)K12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1kt6A)N14 because L (left) conformation "forbidden" or filtered. T0547 285 :EK 1kt6A 10 :RV T0547 288 :R 1kt6A 13 :E T0547 290 :YTLR 1kt6A 15 :FDKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=94141 # 1vqoB.285.114 read from T0547.t06.many.frag # found chain 1vqoB in template set T0547 285 :EKSRNYTLR 1vqoB 114 :DVPEDHDPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94142 # 1lkkA.285.5 read from T0547.t06.many.frag # found chain 1lkkA in training set T0547 285 :EKSRNYTLR 1lkkA 127 :WFFKNLSRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94143 # 1wnyA.285.152 read from T0547.t06.many.frag # found chain 1wnyA in training set Warning: unaligning (T0547)K286 (1wnyA)P353 because C (cis) conformation "forbidden" or filtered. T0547 285 :E 1wnyA 352 :E T0547 287 :SRNYTLR 1wnyA 354 :FKGLYFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=94145 # 2akaA.285.323 read from T0547.t06.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)N289 (2akaA)G317 because T (delta_L) conformation "forbidden" or filtered. T0547 285 :EKSR 2akaA 313 :VDIK T0547 290 :YTLR 2akaA 318 :VSDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=94147 # 1k8qA.285.115 read from T0547.t06.many.frag # found chain 1k8qA in template set T0547 285 :EKSRNYTLR 1k8qA 116 :VEFWAFSFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94148 # 4dpvZ.285.238 read from T0547.t06.many.frag # found chain 4dpvZ in template set T0547 285 :EKSRNYTLR 4dpvZ 239 :DDVQFYTIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94149 # 2btoA.285.284 read from T0547.t06.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2btoA)E289 T0547 290 :YTLR 2btoA 290 :LGIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94150 1huw expands to /projects/compbio/data/pdb/1huw.pdb.gz 1huw:Warning: there is no chain 1huw will retry with 1huwA Skipped atom 238, because occupancy 0.500 <= existing 0.500 in 1huw Skipped atom 240, because occupancy 0.500 <= existing 0.500 in 1huw Skipped atom 242, because occupancy 0.500 <= existing 0.500 in 1huw Skipped atom 244, because occupancy 0.500 <= existing 0.500 in 1huw Skipped atom 246, because occupancy 0.500 <= existing 0.500 in 1huw Skipped atom 331, because occupancy 0.500 <= existing 0.500 in 1huw Skipped atom 333, because occupancy 0.500 <= existing 0.500 in 1huw Skipped atom 335, because occupancy 0.500 <= existing 0.500 in 1huw Skipped atom 337, because occupancy 0.500 <= existing 0.500 in 1huw Skipped atom 339, because occupancy 0.500 <= existing 0.500 in 1huw Skipped atom 962, because occupancy 0.500 <= existing 0.500 in 1huw Skipped atom 964, because occupancy 0.500 <= existing 0.500 in 1huw Skipped atom 966, because occupancy 0.500 <= existing 0.500 in 1huw Skipped atom 968, because occupancy 0.500 <= existing 0.500 in 1huw # 1huw.285.102 read from T0547.t06.many.frag # adding 1huw to template set # found chain 1huw in template set T0547 285 :EKSRNYTLR 1huw 103 :YGASDSNVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94151 # 1i4uA.285.9 read from T0547.t06.many.frag # found chain 1i4uA in training set Warning: unaligning (T0547)E285 (1i4uA)G10 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE in next template residue (1i4uA)D16 Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE at template residue (1i4uA)D16 T0547 286 :KSRN 1i4uA 11 :KCAS T0547 292 :LR 1i4uA 17 :RN Number of specific fragments extracted= 2 number of extra gaps= 2 total=94153 # 1dk0A.285.8 read from T0547.t06.many.frag # found chain 1dk0A in training set T0547 285 :EKSRNYTLR 1dk0A 9 :SSFGGYSIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=94154 # 1bu8A.285.242 read from T0547.t06.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)E285 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1bu8A)L242 Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1bu8A)L242 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)S243 Warning: unaligning (T0547)R288 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (1bu8A)T244 Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bu8A)I245 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)V246 Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE in next template residue (1bu8A)I248 Warning: unaligning (T0547)L292 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)I248 Warning: unaligning (T0547)R293 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)N249 Number of specific fragments extracted= 0 number of extra gaps= 1 total=94154 # 1zgmA.285.130 read from T0547.t06.many.frag # found chain 1zgmA in template set T0547 285 :EKSRNYTLR 1zgmA 119 :EMWTPEKWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94155 # 1woqA.285.43 read from T0547.t06.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N289 (1woqA)P48 because C (cis) conformation "forbidden" or filtered. T0547 285 :EKSR 1woqA 44 :PTPQ T0547 290 :YTLR 1woqA 49 :ATPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=94157 # 1qo7A.285.156 read from T0547.t06.many.frag # found chain 1qo7A in training set Warning: unaligning (T0547)R288 (1qo7A)K162 because Y (epsilon') conformation "forbidden" or filtered. T0547 285 :EKS 1qo7A 159 :PLD T0547 289 :NYTLR 1qo7A 163 :DFGLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=94159 # 1sz2A.285.218 read from T0547.t06.many.frag # found chain 1sz2A in template set T0547 285 :EKSRNYTLR 1sz2A 208 :RLPENLKPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94160 # 1pcxA.285.724 read from T0547.t06.many.frag # found chain 1pcxA in template set Warning: unaligning (T0547)K286 (1pcxA)V842 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1pcxA)N845 because L (left) conformation "forbidden" or filtered. T0547 285 :E 1pcxA 841 :P T0547 287 :SR 1pcxA 843 :VE T0547 290 :YTLR 1pcxA 846 :SEFN Number of specific fragments extracted= 3 number of extra gaps= 2 total=94163 # 1dlwA.285.30 read from T0547.t06.many.frag # found chain 1dlwA in training set Warning: unaligning (T0547)N289 (1dlwA)G35 because T (delta_L) conformation "forbidden" or filtered. T0547 285 :EKSR 1dlwA 31 :TFFN T0547 290 :YTLR 1dlwA 36 :IDMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=94165 # 1lla.285.258 read from T0547.t06.many.frag # found chain 1lla in template set Warning: unaligning (T0547)E285 (1lla)R259 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K286 (1lla)D260 because P (beta_P) conformation "forbidden" or filtered. T0547 287 :SRNYTLR 1lla 261 :LGDIEIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=94166 # 1e58A.285.145 read from T0547.t06.many.frag # found chain 1e58A in training set Warning: unaligning (T0547)K286 (1e58A)L147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1e58A)T150 because Y (epsilon') conformation "forbidden" or filtered. T0547 285 :E 1e58A 146 :E T0547 287 :SR 1e58A 148 :PL T0547 290 :YTLR 1e58A 151 :ESLA Number of specific fragments extracted= 3 number of extra gaps= 2 total=94169 # 1hf8A.285.153 read from T0547.t06.many.frag # found chain 1hf8A in template set T0547 285 :EKSRNYTLR 1hf8A 154 :GVMRTMNTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94170 # 4eugA.286.134 read from T0547.t06.many.frag # found chain 4eugA in template set T0547 286 :KSRNYTLRE 4eugA 135 :SHASLGWET Number of specific fragments extracted= 1 number of extra gaps= 0 total=94171 # 1x89A.286.17 read from T0547.t06.many.frag # found chain 1x89A in template set Warning: unaligning (T0547)N289 (1x89A)N21 because L (left) conformation "forbidden" or filtered. T0547 286 :KSR 1x89A 18 :LQQ T0547 290 :YTLRE 1x89A 22 :FQDNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=94173 # 1iv3A.286.66 read from T0547.t06.many.frag # found chain 1iv3A in training set Warning: unaligning (T0547)N289 (1iv3A)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 286 :KSR 1iv3A 67 :RWR T0547 290 :YTLRE 1iv3A 71 :ERSEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=94175 # 2b4vA.286.337 read from T0547.t06.many.frag # found chain 2b4vA in training set T0547 286 :KSRNYTLRE 2b4vA 357 :PLYDCDPTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94176 # 1vqoB.286.115 read from T0547.t06.many.frag # found chain 1vqoB in template set Warning: unaligning (T0547)K286 (1vqoB)V115 because P (beta_P) conformation "forbidden" or filtered. T0547 287 :SRNYTLRE 1vqoB 116 :PEDHDPDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=94177 # 1kt6A.286.10 read from T0547.t06.many.frag # found chain 1kt6A in training set T0547 286 :KSRNYTLRE 1kt6A 11 :VKENFDKAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94178 # 2akaA.286.324 read from T0547.t06.many.frag # found chain 2akaA in template set T0547 286 :KSRNYTLRE 2akaA 314 :DIKGVSDSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94179 # 1h6pA.286.165 read from T0547.t06.many.frag # found chain 1h6pA in template set T0547 286 :KSRNYTLRE 1h6pA 208 :VIQNFSYET Number of specific fragments extracted= 1 number of extra gaps= 0 total=94180 # 1u20A.286.16 read from T0547.t06.many.frag # found chain 1u20A in template set T0547 286 :KSRNYTLRE 1u20A 17 :RPRNISREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94181 # 1lkkA.286.6 read from T0547.t06.many.frag # found chain 1lkkA in training set T0547 286 :KSRNYTLRE 1lkkA 128 :FFKNLSRKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94182 # 1woqA.286.44 read from T0547.t06.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N289 (1woqA)P48 because C (cis) conformation "forbidden" or filtered. T0547 286 :KSR 1woqA 45 :TPQ T0547 290 :YTLRE 1woqA 49 :ATPES Number of specific fragments extracted= 2 number of extra gaps= 1 total=94184 # 1zb1A.286.296 read from T0547.t06.many.frag # found chain 1zb1A in template set Warning: unaligning (T0547)N289 (1zb1A)F295 because G (3-10) conformation "forbidden" or filtered. T0547 286 :KSR 1zb1A 292 :LVE T0547 290 :YTLRE 1zb1A 296 :IDFDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=94186 # 1p0yA.286.158 read from T0547.t06.many.frag # found chain 1p0yA in template set Warning: unaligning (T0547)K286 (1p0yA)F203 because D (zeta) conformation "forbidden" or filtered. T0547 287 :SRNYTLRE 1p0yA 204 :PDPVTLDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=94187 # 1lam.286.173 read from T0547.t06.many.frag # found chain 1lam in training set T0547 286 :KSRNYTLRE 1lam 174 :PANEMTPTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94188 # 1crzA.286.54 read from T0547.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)K286 (1crzA)S61 because Y (epsilon') conformation "forbidden" or filtered. T0547 287 :SRNYTLRE 1crzA 62 :AQEVQPAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=94189 # 1ycdA.286.79 read from T0547.t06.many.frag # found chain 1ycdA in training set T0547 286 :KSRNYTLRE 1ycdA 80 :ISHELDISE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94190 # 1h21A.286.19 read from T0547.t06.many.frag # found chain 1h21A in template set T0547 286 :KSRNYTLRE 1h21A 20 :KPHKLDPKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94191 # 1cvrA.286.156 read from T0547.t06.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)R288 (1cvrA)N159 because L (left) conformation "forbidden" or filtered. T0547 286 :KS 1cvrA 157 :AD T0547 289 :NYTLRE 1cvrA 160 :GESDIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=94193 # 1huw.286.103 read from T0547.t06.many.frag # found chain 1huw in template set T0547 286 :KSRNYTLRE 1huw 104 :GASDSNVYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94194 # 1bu8A.286.243 read from T0547.t06.many.frag # found chain 1bu8A in training set Warning: unaligning (T0547)K286 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1bu8A)L242 Warning: unaligning (T0547)S287 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)S243 Warning: unaligning (T0547)R288 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (1bu8A)T244 Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bu8A)I245 Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)V246 Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE in next template residue (1bu8A)I248 Warning: unaligning (T0547)L292 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)I248 Warning: unaligning (T0547)R293 because of BadResidue code BAD_PEPTIDE at template residue (1bu8A)N249 T0547 294 :E 1bu8A 250 :G Number of specific fragments extracted= 1 number of extra gaps= 1 total=94195 # 2amdA.286.52 read from T0547.t06.many.frag # found chain 2amdA in template set T0547 286 :KSRNYTLRE 2amdA 48 :DMLNPNYED Number of specific fragments extracted= 1 number of extra gaps= 0 total=94196 # 2btoA.286.285 read from T0547.t06.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2btoA)E289 T0547 290 :YTLRE 2btoA 290 :LGIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94197 # 1dk0A.286.9 read from T0547.t06.many.frag # found chain 1dk0A in training set T0547 286 :KSRNYTLRE 1dk0A 10 :SFGGYSIHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94198 # 2evrA.286.98 read from T0547.t06.many.frag # found chain 2evrA in template set T0547 286 :KSRNYTLRE 2evrA 87 :TFSESEIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94199 # 1i4uA.286.10 read from T0547.t06.many.frag # found chain 1i4uA in training set Warning: unaligning (T0547)Y290 because of BadResidue code BAD_PEPTIDE in next template residue (1i4uA)D16 Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE at template residue (1i4uA)D16 T0547 286 :KSRN 1i4uA 11 :KCAS T0547 292 :LRE 1i4uA 17 :RNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=94201 # 1dlwA.286.31 read from T0547.t06.many.frag # found chain 1dlwA in training set Warning: unaligning (T0547)N289 (1dlwA)G35 because T (delta_L) conformation "forbidden" or filtered. T0547 286 :KSR 1dlwA 32 :FFN T0547 290 :YTLRE 1dlwA 36 :IDMPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=94203 # 1va6A.286.249 read from T0547.t06.many.frag # found chain 1va6A in template set Warning: unaligning (T0547)K286 (1va6A)G250 because L (left) conformation "forbidden" or filtered. T0547 287 :SRNYTLRE 1va6A 251 :ITFNDLYE Number of specific fragments extracted= 1 number of extra gaps= 1 total=94204 # 1nd4A.286.160 read from T0547.t06.many.frag # found chain 1nd4A in template set T0547 286 :KSRNYTLRE 1nd4A 161 :EHQGLAPAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94205 # 1t1jA.286.58 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 286 :KSRNYTLRE 1t1jA 52 :CLAELDRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94206 # 1sz2A.286.219 read from T0547.t06.many.frag # found chain 1sz2A in template set T0547 286 :KSRNYTLRE 1sz2A 209 :LPENLKPKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94207 # 4eugA.287.135 read from T0547.t06.many.frag # found chain 4eugA in template set Warning: unaligning (T0547)S287 (4eugA)H136 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T291 (4eugA)G140 because T (delta_L) conformation "forbidden" or filtered. T0547 288 :RNY 4eugA 137 :ASL T0547 292 :LREY 4eugA 141 :WETF Number of specific fragments extracted= 2 number of extra gaps= 2 total=94209 # 2b4vA.287.338 read from T0547.t06.many.frag # found chain 2b4vA in training set T0547 287 :SRNYTLREY 2b4vA 358 :LYDCDPTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94210 # 1vqoB.287.116 read from T0547.t06.many.frag # found chain 1vqoB in template set T0547 287 :SRNYTLREY 1vqoB 116 :PEDHDPDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94211 # 1woqA.287.45 read from T0547.t06.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N289 (1woqA)P48 because C (cis) conformation "forbidden" or filtered. T0547 287 :SR 1woqA 46 :PQ T0547 290 :YTLREY 1woqA 49 :ATPESV Number of specific fragments extracted= 2 number of extra gaps= 1 total=94213 # 1x89A.287.18 read from T0547.t06.many.frag # found chain 1x89A in template set T0547 287 :SRNYTLREY 1x89A 19 :QQNFQDNQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94214 # 1h6pA.287.166 read from T0547.t06.many.frag # found chain 1h6pA in template set Warning: unaligning (T0547)S287 (1h6pA)I209 because T (delta_L) conformation "forbidden" or filtered. T0547 288 :RNYTLREY 1h6pA 210 :QNFSYETF Number of specific fragments extracted= 1 number of extra gaps= 1 total=94215 # 1h21A.287.20 read from T0547.t06.many.frag # found chain 1h21A in template set T0547 287 :SRNYTLREY 1h21A 21 :PHKLDPKEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=94216 # 1iv3A.287.67 read from T0547.t06.many.frag # found chain 1iv3A in training set Warning: unaligning (T0547)R288 (1iv3A)R69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1iv3A)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 287 :S 1iv3A 68 :W T0547 290 :YTLREY 1iv3A 71 :ERSEVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=94218 # 2akaA.287.325 read from T0547.t06.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)R288 (2akaA)K316 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (2akaA)G317 because T (delta_L) conformation "forbidden" or filtered. T0547 287 :S 2akaA 315 :I T0547 290 :YTLREY 2akaA 318 :VSDSEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=94220 # 1va6A.287.250 read from T0547.t06.many.frag # found chain 1va6A in template set T0547 287 :SRNYTLREY 1va6A 251 :ITFNDLYEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94221 # 1p0yA.287.159 read from T0547.t06.many.frag # found chain 1p0yA in template set T0547 287 :SRNYTLREY 1p0yA 204 :PDPVTLDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94222 # 1kt6A.287.11 read from T0547.t06.many.frag # found chain 1kt6A in training set Warning: unaligning (T0547)N289 (1kt6A)N14 because L (left) conformation "forbidden" or filtered. T0547 287 :SR 1kt6A 12 :KE T0547 290 :YTLREY 1kt6A 15 :FDKARF Number of specific fragments extracted= 2 number of extra gaps= 1 total=94224 # 1zb1A.287.297 read from T0547.t06.many.frag # found chain 1zb1A in template set T0547 287 :SRNYTLREY 1zb1A 293 :VEFIDFDGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94225 # 1lkkA.287.7 read from T0547.t06.many.frag # found chain 1lkkA in training set T0547 287 :SRNYTLREY 1lkkA 129 :FKNLSRKDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94226 # 1lam.287.174 read from T0547.t06.many.frag # found chain 1lam in training set T0547 287 :SRNYTLREY 1lam 175 :ANEMTPTKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94227 # 1u20A.287.17 read from T0547.t06.many.frag # found chain 1u20A in template set T0547 287 :SRNYTLREY 1u20A 18 :PRNISREES Number of specific fragments extracted= 1 number of extra gaps= 0 total=94228 # 1tu1A.287.47 read from T0547.t06.many.frag # found chain 1tu1A in template set T0547 287 :SRNYTLREY 1tu1A 46 :QGDAPFADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94229 # 1huw.287.104 read from T0547.t06.many.frag # found chain 1huw in template set Warning: unaligning (T0547)N289 (1huw)D107 because G (3-10) conformation "forbidden" or filtered. T0547 287 :SR 1huw 105 :AS T0547 290 :YTLREY 1huw 108 :SNVYDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=94231 # 1ycdA.287.80 read from T0547.t06.many.frag # found chain 1ycdA in training set T0547 287 :SRNYTLREY 1ycdA 81 :SHELDISEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94232 # 1nvmB.287.214 read from T0547.t06.many.frag # found chain 1nvmB in training set T0547 287 :SRNYTLREY 1nvmB 215 :SAAADQAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94233 # 2bghA.287.50 read from T0547.t06.many.frag # found chain 2bghA in template set T0547 287 :SRNYTLREY 2bghA 51 :DSNLDPAQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94234 # 1pi1A.287.74 read from T0547.t06.many.frag # found chain 1pi1A in template set Warning: unaligning (T0547)S287 (1pi1A)P85 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R288 (1pi1A)I86 because P (beta_P) conformation "forbidden" or filtered. T0547 289 :NYTLREY 1pi1A 87 :KCSAPKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=94235 # 1cvrA.287.157 read from T0547.t06.many.frag # found chain 1cvrA in template set Warning: unaligning (T0547)R288 (1cvrA)N159 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1cvrA)G160 because L (left) conformation "forbidden" or filtered. T0547 287 :S 1cvrA 158 :D T0547 290 :YTLREY 1cvrA 161 :ESDIQH Number of specific fragments extracted= 2 number of extra gaps= 1 total=94237 # 1u24A.287.144 read from T0547.t06.many.frag # found chain 1u24A in template set T0547 287 :SRNYTLREY 1u24A 145 :NLGKSQHEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94238 # 1nd4A.287.161 read from T0547.t06.many.frag # found chain 1nd4A in template set Warning: unaligning (T0547)N289 (1nd4A)G164 because T (delta_L) conformation "forbidden" or filtered. T0547 287 :SR 1nd4A 162 :HQ T0547 290 :YTLREY 1nd4A 165 :LAPAEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=94240 # 1crzA.287.55 read from T0547.t06.many.frag # found chain 1crzA in template set T0547 287 :SRNYTLREY 1crzA 62 :AQEVQPAAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=94241 # 1dlwA.287.32 read from T0547.t06.many.frag # found chain 1dlwA in training set T0547 287 :SRNYTLREY 1dlwA 33 :FNGIDMPNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94242 # 1sz7A.287.74 read from T0547.t06.many.frag # found chain 1sz7A in training set Warning: unaligning (T0547)S287 (1sz7A)G66 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1sz7A)C68 because Y (epsilon') conformation "forbidden" or filtered. T0547 288 :R 1sz7A 67 :R T0547 290 :YTLREY 1sz7A 69 :HDFRET Number of specific fragments extracted= 2 number of extra gaps= 2 total=94244 # 1t1jA.287.59 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 287 :SRNYTLREY 1t1jA 53 :LAELDRAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94245 # 1xd3A.287.125 read from T0547.t06.many.frag # found chain 1xd3A in training set T0547 287 :SRNYTLREY 1xd3A 126 :SVSMSPEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=94246 # 4eugA.288.136 read from T0547.t06.many.frag # found chain 4eugA in template set Warning: unaligning (T0547)T291 (4eugA)G140 because T (delta_L) conformation "forbidden" or filtered. T0547 288 :RNY 4eugA 137 :ASL T0547 292 :LREYA 4eugA 141 :WETFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=94248 # 1woqA.288.46 read from T0547.t06.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N289 (1woqA)P48 because C (cis) conformation "forbidden" or filtered. T0547 288 :R 1woqA 47 :Q T0547 290 :YTLREYA 1woqA 49 :ATPESVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=94250 # 2b4vA.288.339 read from T0547.t06.many.frag # found chain 2b4vA in training set T0547 288 :RNYTLREYA 2b4vA 359 :YDCDPTELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94251 # 1h6pA.288.167 read from T0547.t06.many.frag # found chain 1h6pA in template set Warning: unaligning (T0547)N289 (1h6pA)N211 because D (zeta) conformation "forbidden" or filtered. T0547 288 :R 1h6pA 210 :Q T0547 290 :YTLREYA 1h6pA 212 :FSYETFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=94253 # 1h21A.288.21 read from T0547.t06.many.frag # found chain 1h21A in template set T0547 288 :RNYTLREYA 1h21A 22 :HKLDPKECA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94254 # 1vqoB.288.117 read from T0547.t06.many.frag # found chain 1vqoB in template set T0547 288 :RNYTLREYA 1vqoB 117 :EDHDPDAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94255 # 2akaA.288.326 read from T0547.t06.many.frag # found chain 2akaA in template set T0547 288 :RNYTLREYA 2akaA 316 :KGVSDSEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94256 # 1nd4A.288.162 read from T0547.t06.many.frag # found chain 1nd4A in template set T0547 288 :RNYTLREYA 1nd4A 163 :QGLAPAELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94257 # 1lam.288.175 read from T0547.t06.many.frag # found chain 1lam in training set T0547 288 :RNYTLREYA 1lam 176 :NEMTPTKFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94258 # 1nvmB.288.215 read from T0547.t06.many.frag # found chain 1nvmB in training set T0547 288 :RNYTLREYA 1nvmB 216 :AAADQAAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94259 # 1xd3A.288.126 read from T0547.t06.many.frag # found chain 1xd3A in training set T0547 288 :RNYTLREYA 1xd3A 127 :VSMSPEERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94260 # 1zb1A.288.298 read from T0547.t06.many.frag # found chain 1zb1A in template set T0547 288 :RNYTLREYA 1zb1A 294 :EFIDFDGFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94261 # 1pi1A.288.75 read from T0547.t06.many.frag # found chain 1pi1A in template set T0547 288 :RNYTLREYA 1pi1A 86 :IKCSAPKYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94262 # 1vjvA.288.121 read from T0547.t06.many.frag # found chain 1vjvA in training set T0547 288 :RNYTLREYA 1vjvA 206 :KQQDAEELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94263 # 1iv3A.288.68 read from T0547.t06.many.frag # found chain 1iv3A in training set Warning: unaligning (T0547)R288 (1iv3A)R69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N289 (1iv3A)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 290 :YTLREYA 1iv3A 71 :ERSEVFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=94264 # 2bghA.288.51 read from T0547.t06.many.frag # found chain 2bghA in template set T0547 288 :RNYTLREYA 2bghA 52 :SNLDPAQTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94265 # 2btoA.288.287 read from T0547.t06.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2btoA)E289 T0547 290 :YTLREYA 2btoA 290 :LGIEEMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94266 # 1bu6O.288.44 read from T0547.t06.many.frag # found chain 1bu6O in template set T0547 288 :RNYTLREYA 1bu6O 45 :VEHDPMEIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=94267 # 1tu1A.288.48 read from T0547.t06.many.frag # found chain 1tu1A in template set Warning: unaligning (T0547)R288 (1tu1A)G47 because S (epsilon) conformation "forbidden" or filtered. T0547 289 :NYTLREYA 1tu1A 48 :DAPFADYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=94268 # 1bykA.288.219 read from T0547.t06.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)R288 (1bykA)V280 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T291 (1bykA)G283 because L (left) conformation "forbidden" or filtered. T0547 289 :NY 1bykA 281 :DP T0547 292 :LREYA 1bykA 284 :YAEAG Number of specific fragments extracted= 2 number of extra gaps= 2 total=94270 # 1ycdA.288.81 read from T0547.t06.many.frag # found chain 1ycdA in training set Warning: unaligning (T0547)T291 (1ycdA)D85 because D (zeta) conformation "forbidden" or filtered. T0547 288 :RNY 1ycdA 82 :HEL T0547 292 :LREYA 1ycdA 86 :ISEGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=94272 # 1t1jA.288.60 read from T0547.t06.many.frag # found chain 1t1jA in training set T0547 288 :RNYTLREYA 1t1jA 54 :AELDRAAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94273 # 1a41.288.212 read from T0547.t06.many.frag # found chain 1a41 in template set T0547 288 :RNYTLREYA 1a41 293 :SKTTFDEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94274 # 1p0yA.288.160 read from T0547.t06.many.frag # found chain 1p0yA in template set T0547 288 :RNYTLREYA 1p0yA 205 :DPVTLDDFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94275 # 1sz7A.288.75 read from T0547.t06.many.frag # found chain 1sz7A in training set Warning: unaligning (T0547)N289 (1sz7A)C68 because Y (epsilon') conformation "forbidden" or filtered. T0547 288 :R 1sz7A 67 :R T0547 290 :YTLREYA 1sz7A 69 :HDFRETA Number of specific fragments extracted= 2 number of extra gaps= 1 total=94277 # 1u24A.288.145 read from T0547.t06.many.frag # found chain 1u24A in template set Warning: unaligning (T0547)N289 (1u24A)G147 because T (delta_L) conformation "forbidden" or filtered. T0547 288 :R 1u24A 146 :L T0547 290 :YTLREYA 1u24A 148 :KSQHEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=94279 # 1lkkA.288.8 read from T0547.t06.many.frag # found chain 1lkkA in training set T0547 288 :RNYTLREYA 1lkkA 130 :KNLSRKDAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94280 # 1lla.288.261 read from T0547.t06.many.frag # found chain 1lla in template set T0547 288 :RNYTLREYA 1lla 262 :GDIEISEMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94281 # 1huw.288.105 read from T0547.t06.many.frag # found chain 1huw in template set T0547 288 :RNYTLREYA 1huw 106 :SDSNVYDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94282 # 1kufA.288.68 read from T0547.t06.many.frag # found chain 1kufA in template set T0547 288 :RNYTLREYA 1kufA 69 :VQADAPTTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94283 # 1woqA.289.47 read from T0547.t06.many.frag # found chain 1woqA in training set Warning: unaligning (T0547)N289 (1woqA)P48 because C (cis) conformation "forbidden" or filtered. T0547 290 :YTLREYAN 1woqA 49 :ATPESVAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=94284 # 2b4vA.289.340 read from T0547.t06.many.frag # found chain 2b4vA in training set Warning: unaligning (T0547)N289 (2b4vA)D360 because P (beta_P) conformation "forbidden" or filtered. T0547 290 :YTLREYAN 2b4vA 361 :CDPTELGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=94285 # 1h21A.289.22 read from T0547.t06.many.frag # found chain 1h21A in template set T0547 289 :NYTLREYAN 1h21A 23 :KLDPKECAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94286 # 4eugA.289.137 read from T0547.t06.many.frag # found chain 4eugA in template set Warning: unaligning (T0547)N289 (4eugA)S138 because G (3-10) conformation "forbidden" or filtered. T0547 290 :YTLREYAN 4eugA 139 :LGWETFTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=94287 # 1tu1A.289.49 read from T0547.t06.many.frag # found chain 1tu1A in template set T0547 289 :NYTLREYAN 1tu1A 48 :DAPFADYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94288 # 1pi1A.289.76 read from T0547.t06.many.frag # found chain 1pi1A in template set T0547 289 :NYTLREYAN 1pi1A 87 :KCSAPKYID Number of specific fragments extracted= 1 number of extra gaps= 0 total=94289 # 2bghA.289.52 read from T0547.t06.many.frag # found chain 2bghA in template set T0547 289 :NYTLREYAN 2bghA 53 :NLDPAQTSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94290 # 7odcA.289.244 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 289 :NYTLREYAN 7odcA 245 :KLKFEEITS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94291 # 1bu6O.289.45 read from T0547.t06.many.frag # found chain 1bu6O in template set T0547 289 :NYTLREYAN 1bu6O 46 :EHDPMEIWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94292 # 1xcrA.289.10 read from T0547.t06.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE in next template residue (1xcrA)L13 Warning: unaligning (T0547)L292 because of BadResidue code BAD_PEPTIDE at template residue (1xcrA)L13 Warning: unaligning (T0547)N297 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xcrA)V19 T0547 289 :NY 1xcrA 10 :VP T0547 293 :REYA 1xcrA 14 :EELA Number of specific fragments extracted= 2 number of extra gaps= 2 total=94294 # 1q9jA.289.296 read from T0547.t06.many.frag # found chain 1q9jA in template set T0547 289 :NYTLREYAN 1q9jA 297 :NTDIVDLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94295 # 1a41.289.213 read from T0547.t06.many.frag # found chain 1a41 in template set T0547 289 :NYTLREYAN 1a41 294 :KTTFDEFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94296 # 1va6A.289.252 read from T0547.t06.many.frag # found chain 1va6A in template set T0547 289 :NYTLREYAN 1va6A 253 :FNDLYEYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94297 # 1h6pA.289.168 read from T0547.t06.many.frag # found chain 1h6pA in template set T0547 289 :NYTLREYAN 1h6pA 211 :NFSYETFQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94298 # 1lam.289.176 read from T0547.t06.many.frag # found chain 1lam in training set T0547 289 :NYTLREYAN 1lam 177 :EMTPTKFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94299 # 1dqaA.289.300 read from T0547.t06.many.frag # found chain 1dqaA in template set T0547 289 :NYTLREYAN 1dqaA 722 :KTTTEAMIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94300 # 1zb1A.289.299 read from T0547.t06.many.frag # found chain 1zb1A in template set T0547 289 :NYTLREYAN 1zb1A 295 :FIDFDGFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94301 # 1knwA.289.237 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N289 (1knwA)A238 because P (beta_P) conformation "forbidden" or filtered. T0547 290 :YTLREYAN 1knwA 239 :VDTEHYYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=94302 # 2btoA.289.288 read from T0547.t06.many.frag # found chain 2btoA in template set Warning: unaligning (T0547)N289 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2btoA)E289 T0547 290 :YTLREYAN 2btoA 290 :LGIEEMIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94303 # 1nvmB.289.216 read from T0547.t06.many.frag # found chain 1nvmB in training set T0547 289 :NYTLREYAN 1nvmB 217 :AADQAAVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94304 # 2c0hA.289.194 read from T0547.t06.many.frag # found chain 2c0hA in training set T0547 289 :NYTLREYAN 2c0hA 209 :LYSAQEIGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94305 # 1el6A.289.118 read from T0547.t06.many.frag # found chain 1el6A in template set Warning: unaligning (T0547)N289 (1el6A)G119 because T (delta_L) conformation "forbidden" or filtered. T0547 290 :YTLREYAN 1el6A 120 :MTAIEFVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=94306 # 1sz7A.289.76 read from T0547.t06.many.frag # found chain 1sz7A in training set Warning: unaligning (T0547)N289 (1sz7A)C68 because Y (epsilon') conformation "forbidden" or filtered. T0547 290 :YTLREYAN 1sz7A 69 :HDFRETAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=94307 # 1nd4A.289.163 read from T0547.t06.many.frag # found chain 1nd4A in template set Warning: unaligning (T0547)N289 (1nd4A)G164 because T (delta_L) conformation "forbidden" or filtered. T0547 290 :YTLREYAN 1nd4A 165 :LAPAELFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=94308 # 1iruK.289.73 read from T0547.t06.many.frag # found chain 1iruK in template set T0547 289 :NYTLREYAN 1iruK 74 :ELSPTAAAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94309 # 1u24A.289.146 read from T0547.t06.many.frag # found chain 1u24A in template set T0547 289 :NYTLREYAN 1u24A 147 :GKSQHEALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94310 # 1bykA.289.220 read from T0547.t06.many.frag # found chain 1bykA in template set Warning: unaligning (T0547)T291 (1bykA)G283 because L (left) conformation "forbidden" or filtered. T0547 289 :NY 1bykA 281 :DP T0547 292 :LREYAN 1bykA 284 :YAEAGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=94312 # 1xd3A.289.127 read from T0547.t06.many.frag # found chain 1xd3A in training set T0547 289 :NYTLREYAN 1xd3A 128 :SMSPEERAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94313 # 1n1bA.289.388 read from T0547.t06.many.frag # found chain 1n1bA in template set T0547 289 :NYTLREYAN 1n1bA 438 :TPSLDEYLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94314 # 1nnhA.289.122 read from T0547.t06.many.frag # found chain 1nnhA in training set T0547 289 :NYTLREYAN 1nnhA 123 :RAKMEDIMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94315 # 1woqA.290.48 read from T0547.t06.many.frag # found chain 1woqA in training set T0547 290 :YTLREYAND 1woqA 49 :ATPESVAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94316 # 7odcA.290.245 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 290 :YTLREYAND 7odcA 246 :LKFEEITSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94317 # 1knwA.290.238 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 290 :YTLREYAND 1knwA 239 :VDTEHYYGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94318 # 1pi1A.290.77 read from T0547.t06.many.frag # found chain 1pi1A in template set T0547 290 :YTLREYAND 1pi1A 88 :CSAPKYIDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94319 # 1tu1A.290.50 read from T0547.t06.many.frag # found chain 1tu1A in template set T0547 290 :YTLREYAND 1tu1A 49 :APFADYVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94320 # 1dqaA.290.301 read from T0547.t06.many.frag # found chain 1dqaA in template set T0547 290 :YTLREYAND 1dqaA 723 :TTTEAMIEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94321 # 2b4vA.290.341 read from T0547.t06.many.frag # found chain 2b4vA in training set T0547 290 :YTLREYAND 2b4vA 361 :CDPTELGRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94322 # 1a41.290.214 read from T0547.t06.many.frag # found chain 1a41 in template set T0547 290 :YTLREYAND 1a41 295 :TTFDEFLSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94323 # 1xcrA.290.11 read from T0547.t06.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE in next template residue (1xcrA)L13 Warning: unaligning (T0547)L292 because of BadResidue code BAD_PEPTIDE at template residue (1xcrA)L13 Warning: unaligning (T0547)N297 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xcrA)V19 Warning: unaligning (T0547)D298 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xcrA)V19 T0547 290 :Y 1xcrA 11 :P T0547 293 :REYA 1xcrA 14 :EELA Number of specific fragments extracted= 2 number of extra gaps= 2 total=94325 # 1q9jA.290.297 read from T0547.t06.many.frag # found chain 1q9jA in template set T0547 290 :YTLREYAND 1q9jA 298 :TDIVDLASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94326 # 2bghA.290.53 read from T0547.t06.many.frag # found chain 2bghA in template set T0547 290 :YTLREYAND 2bghA 54 :LDPAQTSQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=94327 # 1lam.290.177 read from T0547.t06.many.frag # found chain 1lam in training set T0547 290 :YTLREYAND 1lam 178 :MTPTKFAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94328 # 1iruK.290.74 read from T0547.t06.many.frag # found chain 1iruK in template set T0547 290 :YTLREYAND 1iruK 75 :LSPTAAANF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94329 # 1ryp2.290.86 read from T0547.t06.many.frag # found chain 1ryp2 in template set T0547 290 :YTLREYAND 1ryp2 79 :LEPSYIFEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94330 # 1qtwA.290.116 read from T0547.t06.many.frag # found chain 1qtwA in training set T0547 290 :YTLREYAND 1qtwA 117 :ISEEDCLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94331 # 1wv8A.290.31 read from T0547.t06.many.frag # found chain 1wv8A in template set T0547 290 :YTLREYAND 1wv8A 32 :ATLEELLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94332 # 1h21A.290.23 read from T0547.t06.many.frag # found chain 1h21A in template set T0547 290 :YTLREYAND 1h21A 24 :LDPKECAQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94333 # 4eugA.290.138 read from T0547.t06.many.frag # found chain 4eugA in template set T0547 290 :YTLREYAND 4eugA 139 :LGWETFTDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94334 # 1el6A.290.119 read from T0547.t06.many.frag # found chain 1el6A in template set T0547 290 :YTLREYAND 1el6A 120 :MTAIEFVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94335 # 1d0cA.290.165 read from T0547.t06.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)T291 (1d0cA)S205 because Y (epsilon') conformation "forbidden" or filtered. T0547 290 :Y 1d0cA 204 :S T0547 292 :LREYAND 1d0cA 206 :AQEMFTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=94337 # 1va6A.290.253 read from T0547.t06.many.frag # found chain 1va6A in template set T0547 290 :YTLREYAND 1va6A 254 :NDLYEYVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94338 # 1h6pA.290.169 read from T0547.t06.many.frag # found chain 1h6pA in template set T0547 290 :YTLREYAND 1h6pA 212 :FSYETFQQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94339 # 1hziA.290.106 read from T0547.t06.many.frag # found chain 1hziA in template set T0547 290 :YTLREYAND 1hziA 107 :STLENFLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=94340 # 1yarA.290.106 read from T0547.t06.many.frag # found chain 1yarA in template set T0547 290 :YTLREYAND 1yarA 107 :VNIENLVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94341 # 1pp0A.290.93 read from T0547.t06.many.frag # found chain 1pp0A in training set T0547 290 :YTLREYAND 1pp0A 94 :VDLSKLAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94342 # 1j7xA.290.40 read from T0547.t06.many.frag # found chain 1j7xA in training set T0547 290 :YTLREYAND 1j7xA 42 :ISEEDIAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94343 # 1bu6O.290.46 read from T0547.t06.many.frag # found chain 1bu6O in template set T0547 290 :YTLREYAND 1bu6O 47 :HDPMEIWAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94344 # 1w66A.290.101 read from T0547.t06.many.frag # found chain 1w66A in training set Warning: unaligning (T0547)T291 (1w66A)D101 because D (zeta) conformation "forbidden" or filtered. T0547 290 :Y 1w66A 100 :L T0547 292 :LREYAND 1w66A 102 :VVNYVRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=94346 # 1sz7A.290.77 read from T0547.t06.many.frag # found chain 1sz7A in training set T0547 290 :YTLREYAND 1sz7A 69 :HDFRETADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94347 # 1zb1A.290.300 read from T0547.t06.many.frag # found chain 1zb1A in template set T0547 290 :YTLREYAND 1zb1A 296 :IDFDGFKET Number of specific fragments extracted= 1 number of extra gaps= 0 total=94348 # 1pi1A.291.78 read from T0547.t06.many.frag # found chain 1pi1A in template set T0547 291 :TLREYANDV 1pi1A 89 :SAPKYIDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94349 # 7odcA.291.246 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 291 :TLREYANDV 7odcA 247 :KFEEITSVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94350 # 1q9jA.291.298 read from T0547.t06.many.frag # found chain 1q9jA in template set T0547 291 :TLREYANDV 1q9jA 299 :DIVDLASDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94351 # 1tu1A.291.51 read from T0547.t06.many.frag # found chain 1tu1A in template set T0547 291 :TLREYANDV 1tu1A 50 :PFADYVARQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94352 # 1iruK.291.75 read from T0547.t06.many.frag # found chain 1iruK in template set T0547 291 :TLREYANDV 1iruK 76 :SPTAAANFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94353 # 1d0cA.291.166 read from T0547.t06.many.frag # found chain 1d0cA in training set T0547 291 :TLREYANDV 1d0cA 205 :SAQEMFTYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94354 # 1knwA.291.239 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 291 :TLREYANDV 1knwA 240 :DTEHYYGLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=94355 # 1woqA.291.49 read from T0547.t06.many.frag # found chain 1woqA in training set T0547 291 :TLREYANDV 1woqA 50 :TPESVAEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94356 # 1j24A.291.116 read from T0547.t06.many.frag # found chain 1j24A in training set T0547 291 :TLREYANDV 1j24A 117 :TPEETAQYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94357 # 1ryp2.291.87 read from T0547.t06.many.frag # found chain 1ryp2 in template set T0547 291 :TLREYANDV 1ryp2 80 :EPSYIFEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94358 # 1el6A.291.120 read from T0547.t06.many.frag # found chain 1el6A in template set T0547 291 :TLREYANDV 1el6A 121 :TAIEFVAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94359 # 1yarA.291.107 read from T0547.t06.many.frag # found chain 1yarA in template set T0547 291 :TLREYANDV 1yarA 108 :NIENLVKRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94360 # 1w66A.291.102 read from T0547.t06.many.frag # found chain 1w66A in training set T0547 291 :TLREYANDV 1w66A 101 :DVVNYVRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94361 # 1hziA.291.107 read from T0547.t06.many.frag # found chain 1hziA in template set T0547 291 :TLREYANDV 1hziA 108 :TLENFLERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94362 # 2anuA.291.80 read from T0547.t06.many.frag # found chain 2anuA in template set T0547 291 :TLREYANDV 2anuA 69 :KFQDYLKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94363 # 1qtwA.291.117 read from T0547.t06.many.frag # found chain 1qtwA in training set T0547 291 :TLREYANDV 1qtwA 118 :SEEDCLARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94364 # 1a41.291.215 read from T0547.t06.many.frag # found chain 1a41 in template set T0547 291 :TLREYANDV 1a41 296 :TFDEFLSIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94365 # 1xcrA.291.12 read from T0547.t06.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE in next template residue (1xcrA)L13 Warning: unaligning (T0547)L292 because of BadResidue code BAD_PEPTIDE at template residue (1xcrA)L13 Warning: unaligning (T0547)N297 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xcrA)V19 Warning: unaligning (T0547)D298 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xcrA)V19 T0547 293 :REYA 1xcrA 14 :EELA T0547 299 :V 1xcrA 20 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=94367 # 2b4vA.291.342 read from T0547.t06.many.frag # found chain 2b4vA in training set T0547 291 :TLREYANDV 2b4vA 362 :DPTELGRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94368 # 1t0hB.291.189 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 291 :TLREYANDV 1t0hB 391 :QLEDACEHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94369 # 1lam.291.178 read from T0547.t06.many.frag # found chain 1lam in training set T0547 291 :TLREYANDV 1lam 179 :TPTKFAEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94370 # 1pp0A.291.94 read from T0547.t06.many.frag # found chain 1pp0A in training set T0547 291 :TLREYANDV 1pp0A 95 :DLSKLAAII Number of specific fragments extracted= 1 number of extra gaps= 0 total=94371 # 1sz7A.291.78 read from T0547.t06.many.frag # found chain 1sz7A in training set T0547 291 :TLREYANDV 1sz7A 70 :DFRETADVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94372 # 1lw7A.291.221 read from T0547.t06.many.frag # found chain 1lw7A in template set T0547 291 :TLREYANDV 1lw7A 278 :DYPQMALGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=94373 # 1qu9A.291.44 read from T0547.t06.many.frag # found chain 1qu9A in training set Warning: unaligning (T0547)T291 because of BadResidue code BAD_PEPTIDE at template residue (1qu9A)D45 T0547 292 :LREYANDV 1qu9A 46 :VAAQARQS Number of specific fragments extracted= 1 number of extra gaps= 1 total=94374 # 1dqaA.291.302 read from T0547.t06.many.frag # found chain 1dqaA in template set T0547 291 :TLREYANDV 1dqaA 724 :TTEAMIEVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94375 # 1wv8A.291.32 read from T0547.t06.many.frag # found chain 1wv8A in template set T0547 291 :TLREYANDV 1wv8A 33 :TLEELLAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94376 # 1j7xA.291.41 read from T0547.t06.many.frag # found chain 1j7xA in training set T0547 291 :TLREYANDV 1j7xA 43 :SEEDIAAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94377 # 2d0oA.291.303 read from T0547.t06.many.frag # found chain 2d0oA in template set T0547 291 :TLREYANDV 2d0oA 304 :NIGGMLEHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94378 # 1bu6O.291.47 read from T0547.t06.many.frag # found chain 1bu6O in template set T0547 291 :TLREYANDV 1bu6O 48 :DPMEIWATQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94379 # 1pi1A.292.79 read from T0547.t06.many.frag # found chain 1pi1A in template set T0547 292 :LREYANDVV 1pi1A 90 :APKYIDYLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=94380 # 7odcA.292.247 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 292 :LREYANDVV 7odcA 248 :FEEITSVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94381 # 1iruK.292.76 read from T0547.t06.many.frag # found chain 1iruK in template set T0547 292 :LREYANDVV 1iruK 77 :PTAAANFTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94382 # 1ryp2.292.88 read from T0547.t06.many.frag # found chain 1ryp2 in template set T0547 292 :LREYANDVV 1ryp2 81 :PSYIFEYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94383 # 1q9jA.292.299 read from T0547.t06.many.frag # found chain 1q9jA in template set T0547 292 :LREYANDVV 1q9jA 300 :IVDLASDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94384 # 1knwA.292.240 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 292 :LREYANDVV 1knwA 241 :TEHYYGLWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94385 # 1d0cA.292.167 read from T0547.t06.many.frag # found chain 1d0cA in training set T0547 292 :LREYANDVV 1d0cA 206 :AQEMFTYIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=94386 # 1j24A.292.117 read from T0547.t06.many.frag # found chain 1j24A in training set T0547 292 :LREYANDVV 1j24A 118 :PEETAQYIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94387 # 1woqA.292.50 read from T0547.t06.many.frag # found chain 1woqA in training set T0547 292 :LREYANDVV 1woqA 51 :PESVAEAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94388 # 1tu1A.292.52 read from T0547.t06.many.frag # found chain 1tu1A in template set T0547 292 :LREYANDVV 1tu1A 51 :FADYVARQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94389 # 1el6A.292.121 read from T0547.t06.many.frag # found chain 1el6A in template set T0547 292 :LREYANDVV 1el6A 122 :AIEFVAKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94390 # 1t0hB.292.190 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 292 :LREYANDVV 1t0hB 392 :LEDACEHLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94391 # 2anuA.292.81 read from T0547.t06.many.frag # found chain 2anuA in template set T0547 292 :LREYANDVV 2anuA 70 :FQDYLKRLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=94392 # 1yarA.292.108 read from T0547.t06.many.frag # found chain 1yarA in template set T0547 292 :LREYANDVV 1yarA 109 :IENLVKRVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94393 # 1dqaA.292.303 read from T0547.t06.many.frag # found chain 1dqaA in template set T0547 292 :LREYANDVV 1dqaA 725 :TEAMIEVNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94394 # 1hziA.292.108 read from T0547.t06.many.frag # found chain 1hziA in template set T0547 292 :LREYANDVV 1hziA 109 :LENFLERLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94395 # 1nw3A.292.190 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 292 :LREYANDVV 1nw3A 191 :PAKYAETMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94396 # 1pp0A.292.95 read from T0547.t06.many.frag # found chain 1pp0A in training set T0547 292 :LREYANDVV 1pp0A 96 :LSKLAAIIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94397 # 1w66A.292.103 read from T0547.t06.many.frag # found chain 1w66A in training set T0547 292 :LREYANDVV 1w66A 102 :VVNYVRRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94398 # 1qtwA.292.118 read from T0547.t06.many.frag # found chain 1qtwA in training set T0547 292 :LREYANDVV 1qtwA 119 :EEDCLARIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94399 # 1sz7A.292.79 read from T0547.t06.many.frag # found chain 1sz7A in training set T0547 292 :LREYANDVV 1sz7A 71 :FRETADVIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94400 # 1lam.292.179 read from T0547.t06.many.frag # found chain 1lam in training set T0547 292 :LREYANDVV 1lam 180 :PTKFAEIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94401 # 1xcrA.292.13 read from T0547.t06.many.frag # found chain 1xcrA in training set Warning: unaligning (T0547)L292 because of BadResidue code BAD_PEPTIDE at template residue (1xcrA)L13 Warning: unaligning (T0547)N297 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xcrA)V19 Warning: unaligning (T0547)D298 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xcrA)V19 T0547 293 :REYA 1xcrA 14 :EELA T0547 299 :VV 1xcrA 20 :MQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=94403 # 1a41.292.216 read from T0547.t06.many.frag # found chain 1a41 in template set T0547 292 :LREYANDVV 1a41 297 :FDEFLSIVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94404 # 1wv8A.292.33 read from T0547.t06.many.frag # found chain 1wv8A in template set T0547 292 :LREYANDVV 1wv8A 34 :LEELLAKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94405 # 1lw7A.292.222 read from T0547.t06.many.frag # found chain 1lw7A in template set T0547 292 :LREYANDVV 1lw7A 279 :YPQMALGHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94406 # 1j7xA.292.42 read from T0547.t06.many.frag # found chain 1j7xA in training set T0547 292 :LREYANDVV 1j7xA 44 :EEDIAAKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94407 # 2d0oA.292.304 read from T0547.t06.many.frag # found chain 2d0oA in template set T0547 292 :LREYANDVV 2d0oA 305 :IGGMLEHVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94408 # 1v4sA.292.108 read from T0547.t06.many.frag # found chain 1v4sA in template set T0547 292 :LREYANDVV 1v4sA 119 :AEMLFDYIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94409 # 1qu9A.292.45 read from T0547.t06.many.frag # found chain 1qu9A in training set T0547 292 :LREYANDVV 1qu9A 46 :VAAQARQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94410 # 1pi1A.293.80 read from T0547.t06.many.frag # found chain 1pi1A in template set T0547 293 :REYANDVVF 1pi1A 91 :PKYIDYLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94411 # 1iruK.293.77 read from T0547.t06.many.frag # found chain 1iruK in template set T0547 293 :REYANDVVF 1iruK 78 :TAAANFTRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94412 # 1q9jA.293.300 read from T0547.t06.many.frag # found chain 1q9jA in template set T0547 293 :REYANDVVF 1q9jA 301 :VDLASDIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94413 # 7odcA.293.248 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 293 :REYANDVVF 7odcA 249 :EEITSVINP Number of specific fragments extracted= 1 number of extra gaps= 0 total=94414 # 1ryp2.293.89 read from T0547.t06.many.frag # found chain 1ryp2 in template set T0547 293 :REYANDVVF 1ryp2 82 :SYIFEYLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94415 # 1j24A.293.118 read from T0547.t06.many.frag # found chain 1j24A in training set T0547 293 :REYANDVVF 1j24A 119 :EETAQYIFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94416 # 1t0hB.293.191 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 293 :REYANDVVF 1t0hB 393 :EDACEHLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94417 # 1d0cA.293.168 read from T0547.t06.many.frag # found chain 1d0cA in training set T0547 293 :REYANDVVF 1d0cA 207 :QEMFTYICN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94418 # 1cg5B.293.56 read from T0547.t06.many.frag # found chain 1cg5B in training set T0547 293 :REYANDVVF 1cg5B 57 :QQHADKVQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94419 # 1el6A.293.122 read from T0547.t06.many.frag # found chain 1el6A in template set T0547 293 :REYANDVVF 1el6A 123 :IEFVAKVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94420 # 1nw3A.293.191 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 293 :REYANDVVF 1nw3A 192 :AKYAETMDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94421 # 1yarA.293.109 read from T0547.t06.many.frag # found chain 1yarA in template set T0547 293 :REYANDVVF 1yarA 110 :ENLVKRVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94422 # 1vj7A.293.214 read from T0547.t06.many.frag # found chain 1vj7A in template set T0547 293 :REYANDVVF 1vj7A 215 :EALVDDIVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94423 # 1hziA.293.109 read from T0547.t06.many.frag # found chain 1hziA in template set T0547 293 :REYANDVVF 1hziA 110 :ENFLERLKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94424 # 1tu1A.293.53 read from T0547.t06.many.frag # found chain 1tu1A in template set T0547 293 :REYANDVVF 1tu1A 52 :ADYVARQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94425 # 2anuA.293.82 read from T0547.t06.many.frag # found chain 2anuA in template set T0547 293 :REYANDVVF 2anuA 71 :QDYLKRLWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94426 # 1woqA.293.51 read from T0547.t06.many.frag # found chain 1woqA in training set T0547 293 :REYANDVVF 1woqA 52 :ESVAEAVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94427 # 1qu9A.293.46 read from T0547.t06.many.frag # found chain 1qu9A in training set T0547 293 :REYANDVVF 1qu9A 47 :AAQARQSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94428 # 1knwA.293.241 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 293 :REYANDVVF 1knwA 242 :EHYYGLWNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94429 # 1j7xA.293.43 read from T0547.t06.many.frag # found chain 1j7xA in training set T0547 293 :REYANDVVF 1j7xA 45 :EDIAAKLNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94430 # 1lam.293.180 read from T0547.t06.many.frag # found chain 1lam in training set T0547 293 :REYANDVVF 1lam 181 :TKFAEIVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94431 # 1lw7A.293.223 read from T0547.t06.many.frag # found chain 1lw7A in template set T0547 293 :REYANDVVF 1lw7A 280 :PQMALGHQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94432 # 1sz7A.293.80 read from T0547.t06.many.frag # found chain 1sz7A in training set T0547 293 :REYANDVVF 1sz7A 72 :RETADVIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94433 # 1huw.293.110 read from T0547.t06.many.frag # found chain 1huw in template set T0547 293 :REYANDVVF 1huw 111 :YDLLKDLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94434 # 2tpsA.293.209 read from T0547.t06.many.frag # found chain 2tpsA in training set T0547 293 :REYANDVVF 2tpsA 218 :ESAARKFRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94435 # 1dqaA.293.304 read from T0547.t06.many.frag # found chain 1dqaA in template set T0547 293 :REYANDVVF 1dqaA 726 :EAMIEVNIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94436 # 1pp0A.293.96 read from T0547.t06.many.frag # found chain 1pp0A in training set T0547 293 :REYANDVVF 1pp0A 97 :SKLAAIILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94437 # 2d0oA.293.305 read from T0547.t06.many.frag # found chain 2d0oA in template set T0547 293 :REYANDVVF 2d0oA 306 :GGMLEHVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94438 # 2ex0A.293.253 read from T0547.t06.many.frag # found chain 2ex0A in training set T0547 293 :REYANDVVF 2ex0A 278 :EYYAQQQLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94439 # 1tqhA.293.124 read from T0547.t06.many.frag # found chain 1tqhA in training set T0547 293 :REYANDVVF 1tqhA 125 :ETMYEGVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94440 # 1pi1A.294.81 read from T0547.t06.many.frag # found chain 1pi1A in template set T0547 294 :EYANDVVFI 1pi1A 92 :KYIDYLMTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=94441 # 7odcA.294.249 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 294 :EYANDVVFI 7odcA 250 :EITSVINPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94442 # 1ryp2.294.90 read from T0547.t06.many.frag # found chain 1ryp2 in template set T0547 294 :EYANDVVFI 1ryp2 83 :YIFEYLATV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94443 # 1q9jA.294.301 read from T0547.t06.many.frag # found chain 1q9jA in template set T0547 294 :EYANDVVFI 1q9jA 302 :DLASDIVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94444 # 1d0cA.294.169 read from T0547.t06.many.frag # found chain 1d0cA in training set T0547 294 :EYANDVVFI 1d0cA 208 :EMFTYICNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=94445 # 1j24A.294.119 read from T0547.t06.many.frag # found chain 1j24A in training set T0547 294 :EYANDVVFI 1j24A 120 :ETAQYIFLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94446 # 1el6A.294.123 read from T0547.t06.many.frag # found chain 1el6A in template set T0547 294 :EYANDVVFI 1el6A 124 :EFVAKVRVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94447 # 1iruK.294.78 read from T0547.t06.many.frag # found chain 1iruK in template set T0547 294 :EYANDVVFI 1iruK 79 :AAANFTRRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94448 # 1cg5B.294.57 read from T0547.t06.many.frag # found chain 1cg5B in training set T0547 294 :EYANDVVFI 1cg5B 58 :QHADKVQRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94449 # 2anuA.294.83 read from T0547.t06.many.frag # found chain 2anuA in template set T0547 294 :EYANDVVFI 2anuA 72 :DYLKRLWRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94450 # 1t0hB.294.192 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 294 :EYANDVVFI 1t0hB 394 :DACEHLADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94451 # 1woqA.294.52 read from T0547.t06.many.frag # found chain 1woqA in training set T0547 294 :EYANDVVFI 1woqA 53 :SVAEAVALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94452 # 1qtwA.294.120 read from T0547.t06.many.frag # found chain 1qtwA in training set T0547 294 :EYANDVVFI 1qtwA 121 :DCLARIAES Number of specific fragments extracted= 1 number of extra gaps= 0 total=94453 # 1hziA.294.110 read from T0547.t06.many.frag # found chain 1hziA in template set T0547 294 :EYANDVVFI 1hziA 111 :NFLERLKTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94454 # 1vj7A.294.215 read from T0547.t06.many.frag # found chain 1vj7A in template set T0547 294 :EYANDVVFI 1vj7A 216 :ALVDDIVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94455 # 1nw3A.294.192 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 294 :EYANDVVFI 1nw3A 193 :KYAETMDRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94456 # 1yarA.294.110 read from T0547.t06.many.frag # found chain 1yarA in template set T0547 294 :EYANDVVFI 1yarA 111 :NLVKRVADQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94457 # 1knwA.294.242 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 294 :EYANDVVFI 1knwA 243 :HYYGLWNAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94458 # 1yt3A.294.304 read from T0547.t06.many.frag # found chain 1yt3A in training set T0547 294 :EYANDVVFI 1yt3A 305 :KAFKAIKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94459 # 1tqhA.294.125 read from T0547.t06.many.frag # found chain 1tqhA in training set T0547 294 :EYANDVVFI 1tqhA 126 :TMYEGVLEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94460 # 1pp0A.294.97 read from T0547.t06.many.frag # found chain 1pp0A in training set T0547 294 :EYANDVVFI 1pp0A 98 :KLAAIILNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94461 # 1v4sA.294.110 read from T0547.t06.many.frag # found chain 1v4sA in template set T0547 294 :EYANDVVFI 1v4sA 121 :MLFDYISEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=94462 # 1scfA.294.98 read from T0547.t06.many.frag # found chain 1scfA in template set T0547 294 :EYANDVVFI 1scfA 74 :SIIDKLVNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94463 # 2tpsA.294.210 read from T0547.t06.many.frag # found chain 2tpsA in training set T0547 294 :EYANDVVFI 2tpsA 219 :SAARKFREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94464 # 1qu9A.294.47 read from T0547.t06.many.frag # found chain 1qu9A in training set T0547 294 :EYANDVVFI 1qu9A 48 :AQARQSLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94465 # 1hi9A.294.188 read from T0547.t06.many.frag # found chain 1hi9A in template set T0547 294 :EYANDVVFI 1hi9A 189 :KRGRLLTEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94466 # 2bk9A.294.59 read from T0547.t06.many.frag # found chain 2bk9A in training set T0547 294 :EYANDVVFI 2bk9A 60 :AHAGRIIRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94467 # 1wa5C.294.636 read from T0547.t06.many.frag # found chain 1wa5C in template set T0547 294 :EYANDVVFI 1wa5C 637 :LLVDSMMPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94468 # 1lam.294.181 read from T0547.t06.many.frag # found chain 1lam in training set T0547 294 :EYANDVVFI 1lam 182 :KFAEIVEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94469 # 2b8nA.294.293 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 294 :EYANDVVFI 2b8nA 282 :EAGRFIASI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94470 # 7odcA.295.250 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 295 :YANDVVFIL 7odcA 251 :ITSVINPAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94471 # 1d0cA.295.170 read from T0547.t06.many.frag # found chain 1d0cA in training set T0547 295 :YANDVVFIL 1d0cA 209 :MFTYICNHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94472 # 1q9jA.295.302 read from T0547.t06.many.frag # found chain 1q9jA in template set T0547 295 :YANDVVFIL 1q9jA 303 :LASDIVATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94473 # 1ryp2.295.91 read from T0547.t06.many.frag # found chain 1ryp2 in template set T0547 295 :YANDVVFIL 1ryp2 84 :IFEYLATVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=94474 # 1j24A.295.120 read from T0547.t06.many.frag # found chain 1j24A in training set T0547 295 :YANDVVFIL 1j24A 121 :TAQYIFLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94475 # 1pi1A.295.82 read from T0547.t06.many.frag # found chain 1pi1A in template set T0547 295 :YANDVVFIL 1pi1A 93 :YIDYLMTWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94476 # 1el6A.295.124 read from T0547.t06.many.frag # found chain 1el6A in template set T0547 295 :YANDVVFIL 1el6A 125 :FVAKVRVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94477 # 1t0hB.295.193 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 295 :YANDVVFIL 1t0hB 395 :ACEHLADYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94478 # 1iruK.295.79 read from T0547.t06.many.frag # found chain 1iruK in template set T0547 295 :YANDVVFIL 1iruK 80 :AANFTRRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94479 # 1vj7A.295.216 read from T0547.t06.many.frag # found chain 1vj7A in template set T0547 295 :YANDVVFIL 1vj7A 217 :LVDDIVTKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94480 # 1cg5B.295.58 read from T0547.t06.many.frag # found chain 1cg5B in training set T0547 295 :YANDVVFIL 1cg5B 59 :HADKVQRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94481 # 2anuA.295.84 read from T0547.t06.many.frag # found chain 2anuA in template set T0547 295 :YANDVVFIL 2anuA 73 :YLKRLWREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94482 # 1yarA.295.111 read from T0547.t06.many.frag # found chain 1yarA in template set T0547 295 :YANDVVFIL 1yarA 112 :LVKRVADQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=94483 # 1woqA.295.53 read from T0547.t06.many.frag # found chain 1woqA in training set T0547 295 :YANDVVFIL 1woqA 54 :VAEAVALVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94484 # 1tqhA.295.126 read from T0547.t06.many.frag # found chain 1tqhA in training set T0547 295 :YANDVVFIL 1tqhA 127 :MYEGVLEYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94485 # 1qtwA.295.121 read from T0547.t06.many.frag # found chain 1qtwA in training set T0547 295 :YANDVVFIL 1qtwA 122 :CLARIAESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94486 # 1hziA.295.111 read from T0547.t06.many.frag # found chain 1hziA in template set T0547 295 :YANDVVFIL 1hziA 112 :FLERLKTIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=94487 # 1yt3A.295.305 read from T0547.t06.many.frag # found chain 1yt3A in training set T0547 295 :YANDVVFIL 1yt3A 306 :AFKAIKSLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94488 # 1knwA.295.243 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 295 :YANDVVFIL 1knwA 244 :YYGLWNAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94489 # 1scfA.295.99 read from T0547.t06.many.frag # found chain 1scfA in template set T0547 295 :YANDVVFIL 1scfA 75 :IIDKLVNIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94490 # 1wa5C.295.637 read from T0547.t06.many.frag # found chain 1wa5C in template set T0547 295 :YANDVVFIL 1wa5C 638 :LVDSMMPTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94491 # 1v4sA.295.111 read from T0547.t06.many.frag # found chain 1v4sA in template set T0547 295 :YANDVVFIL 1v4sA 122 :LFDYISECI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94492 # 1pp0A.295.98 read from T0547.t06.many.frag # found chain 1pp0A in training set T0547 295 :YANDVVFIL 1pp0A 99 :LAAIILNTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94493 # 1nw3A.295.193 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 295 :YANDVVFIL 1nw3A 194 :YAETMDREF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94494 # 2bk9A.295.60 read from T0547.t06.many.frag # found chain 2bk9A in training set T0547 295 :YANDVVFIL 2bk9A 61 :HAGRIIRVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94495 # 1j7xA.295.45 read from T0547.t06.many.frag # found chain 1j7xA in training set T0547 295 :YANDVVFIL 1j7xA 47 :IAAKLNYEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94496 # 1hi9A.295.189 read from T0547.t06.many.frag # found chain 1hi9A in template set T0547 295 :YANDVVFIL 1hi9A 190 :RGRLLTEKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94497 # 1ygtA.295.39 read from T0547.t06.many.frag # found chain 1ygtA in training set T0547 295 :YANDVVFIL 1ygtA 40 :WTGQVVENC Number of specific fragments extracted= 1 number of extra gaps= 0 total=94498 # 2b8nA.295.294 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 295 :YANDVVFIL 2b8nA 283 :AGRFIASIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=94499 # 1fi4A.295.97 read from T0547.t06.many.frag # found chain 1fi4A in template set T0547 295 :YANDVVFIL 1fi4A 78 :CLRDLRQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94500 # 7odcA.296.251 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 296 :ANDVVFILK 7odcA 252 :TSVINPALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94501 # 1cg5B.296.59 read from T0547.t06.many.frag # found chain 1cg5B in training set T0547 296 :ANDVVFILK 1cg5B 60 :ADKVQRALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94502 # 1el6A.296.125 read from T0547.t06.many.frag # found chain 1el6A in template set T0547 296 :ANDVVFILK 1el6A 126 :VAKVRVALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94503 # 1d0cA.296.171 read from T0547.t06.many.frag # found chain 1d0cA in training set T0547 296 :ANDVVFILK 1d0cA 210 :FTYICNHIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94504 # 1ryp2.296.92 read from T0547.t06.many.frag # found chain 1ryp2 in template set T0547 296 :ANDVVFILK 1ryp2 85 :FEYLATVMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94505 # 1pi1A.296.83 read from T0547.t06.many.frag # found chain 1pi1A in template set T0547 296 :ANDVVFILK 1pi1A 94 :IDYLMTWVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94506 # 1iruK.296.80 read from T0547.t06.many.frag # found chain 1iruK in template set T0547 296 :ANDVVFILK 1iruK 81 :ANFTRRNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94507 # 1j24A.296.121 read from T0547.t06.many.frag # found chain 1j24A in training set T0547 296 :ANDVVFILK 1j24A 122 :AQYIFLIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94508 # 1q9jA.296.303 read from T0547.t06.many.frag # found chain 1q9jA in template set T0547 296 :ANDVVFILK 1q9jA 304 :ASDIVATLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94509 # 2anuA.296.85 read from T0547.t06.many.frag # found chain 2anuA in template set T0547 296 :ANDVVFILK 2anuA 74 :LKRLWREQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94510 # 1t0hB.296.194 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 296 :ANDVVFILK 1t0hB 396 :CEHLADYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94511 # 1knwA.296.244 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 296 :ANDVVFILK 1knwA 245 :YGLWNAARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94512 # 1yarA.296.112 read from T0547.t06.many.frag # found chain 1yarA in template set T0547 296 :ANDVVFILK 1yarA 113 :VKRVADQMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94513 # 1vj7A.296.217 read from T0547.t06.many.frag # found chain 1vj7A in template set T0547 296 :ANDVVFILK 1vj7A 218 :VDDIVTKIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94514 # 1woqA.296.54 read from T0547.t06.many.frag # found chain 1woqA in training set T0547 296 :ANDVVFILK 1woqA 55 :AEAVALVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94515 # 1qtwA.296.122 read from T0547.t06.many.frag # found chain 1qtwA in training set T0547 296 :ANDVVFILK 1qtwA 123 :LARIAESIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94516 # 1nw3A.296.194 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 296 :ANDVVFILK 1nw3A 195 :AETMDREFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94517 # 1hziA.296.112 read from T0547.t06.many.frag # found chain 1hziA in template set T0547 296 :ANDVVFILK 1hziA 113 :LERLKTIMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94518 # 1yt3A.296.306 read from T0547.t06.many.frag # found chain 1yt3A in training set T0547 296 :ANDVVFILK 1yt3A 307 :FKAIKSLIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94519 # 1tqhA.296.127 read from T0547.t06.many.frag # found chain 1tqhA in training set T0547 296 :ANDVVFILK 1tqhA 128 :YEGVLEYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94520 # 1v4sA.296.112 read from T0547.t06.many.frag # found chain 1v4sA in template set T0547 296 :ANDVVFILK 1v4sA 123 :FDYISECIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94521 # 1ufyA.296.19 read from T0547.t06.many.frag # found chain 1ufyA in training set T0547 296 :ANDVVFILK 1ufyA 20 :HQATRELLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94522 # 2bk9A.296.61 read from T0547.t06.many.frag # found chain 2bk9A in training set T0547 296 :ANDVVFILK 2bk9A 62 :AGRIIRVFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94523 # 1yn9A.296.96 read from T0547.t06.many.frag # found chain 1yn9A in training set T0547 296 :ANDVVFILK 1yn9A 96 :VQEFIDTVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94524 # 1wa5C.296.638 read from T0547.t06.many.frag # found chain 1wa5C in template set T0547 296 :ANDVVFILK 1wa5C 639 :VDSMMPTFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94525 # 1eexA.296.411 read from T0547.t06.many.frag # found chain 1eexA in training set T0547 296 :ANDVVFILK 1eexA 412 :RNKAARALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94526 # 1qw9A.296.267 read from T0547.t06.many.frag # found chain 1qw9A in training set T0547 296 :ANDVVFILK 1qw9A 268 :IRSVVAIAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94527 # 1hi9A.296.190 read from T0547.t06.many.frag # found chain 1hi9A in template set T0547 296 :ANDVVFILK 1hi9A 191 :GRLLTEKTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94528 # 1scfA.296.100 read from T0547.t06.many.frag # found chain 1scfA in template set T0547 296 :ANDVVFILK 1scfA 76 :IDKLVNIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94529 # 2b8nA.296.295 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 296 :ANDVVFILK 2b8nA 284 :GRFIASIMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94530 # 1cg5B.297.60 read from T0547.t06.many.frag # found chain 1cg5B in training set T0547 297 :NDVVFILKN 1cg5B 61 :DKVQRALGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94531 # 1iruK.297.81 read from T0547.t06.many.frag # found chain 1iruK in template set T0547 297 :NDVVFILKN 1iruK 82 :NFTRRNLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94532 # 1d0cA.297.172 read from T0547.t06.many.frag # found chain 1d0cA in training set T0547 297 :NDVVFILKN 1d0cA 211 :TYICNHIKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94533 # 1el6A.297.126 read from T0547.t06.many.frag # found chain 1el6A in template set T0547 297 :NDVVFILKN 1el6A 127 :AKVRVALQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94534 # 1pi1A.297.84 read from T0547.t06.many.frag # found chain 1pi1A in template set T0547 297 :NDVVFILKN 1pi1A 95 :DYLMTWVQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94535 # 7odcA.297.252 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 297 :NDVVFILKN 7odcA 253 :SVINPALDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94536 # 1q9jA.297.304 read from T0547.t06.many.frag # found chain 1q9jA in template set T0547 297 :NDVVFILKN 1q9jA 305 :SDIVATLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94537 # 1knwA.297.245 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 297 :NDVVFILKN 1knwA 246 :GLWNAAREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94538 # 1ryp2.297.93 read from T0547.t06.many.frag # found chain 1ryp2 in template set T0547 297 :NDVVFILKN 1ryp2 86 :EYLATVMYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94539 # 1j24A.297.122 read from T0547.t06.many.frag # found chain 1j24A in training set T0547 297 :NDVVFILKN 1j24A 123 :QYIFLIAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94540 # 1v4sA.297.113 read from T0547.t06.many.frag # found chain 1v4sA in template set T0547 297 :NDVVFILKN 1v4sA 124 :DYISECISD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94541 # 1ufyA.297.20 read from T0547.t06.many.frag # found chain 1ufyA in training set T0547 297 :NDVVFILKN 1ufyA 21 :QATRELLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94542 # 1t0hB.297.195 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 297 :NDVVFILKN 1t0hB 397 :EHLADYLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94543 # 2anuA.297.86 read from T0547.t06.many.frag # found chain 2anuA in template set T0547 297 :NDVVFILKN 2anuA 75 :KRLWREQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94544 # 1yarA.297.113 read from T0547.t06.many.frag # found chain 1yarA in template set T0547 297 :NDVVFILKN 1yarA 114 :KRVADQMQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94545 # 1nw3A.297.195 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 297 :NDVVFILKN 1nw3A 196 :ETMDREFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94546 # 1tqhA.297.128 read from T0547.t06.many.frag # found chain 1tqhA in training set T0547 297 :NDVVFILKN 1tqhA 129 :EGVLEYARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94547 # 1eexA.297.412 read from T0547.t06.many.frag # found chain 1eexA in training set T0547 297 :NDVVFILKN 1eexA 413 :NKAARALQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94548 # 1yt3A.297.307 read from T0547.t06.many.frag # found chain 1yt3A in training set T0547 297 :NDVVFILKN 1yt3A 308 :KAIKSLITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94549 # 1vj7A.297.218 read from T0547.t06.many.frag # found chain 1vj7A in template set T0547 297 :NDVVFILKN 1vj7A 219 :DDIVTKIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94550 # 1yn9A.297.97 read from T0547.t06.many.frag # found chain 1yn9A in training set T0547 297 :NDVVFILKN 1yn9A 97 :QEFIDTVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94551 # 1zr5A.297.169 read from T0547.t06.many.frag # found chain 1zr5A in template set T0547 297 :NDVVFILKN 1zr5A 326 :QLILKAISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94552 # 1qtwA.297.123 read from T0547.t06.many.frag # found chain 1qtwA in training set T0547 297 :NDVVFILKN 1qtwA 124 :ARIAESINI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94553 # 1xrsA.297.213 read from T0547.t06.many.frag # found chain 1xrsA in template set T0547 297 :NDVVFILKN 1xrsA 214 :RLMREALDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94554 # 1qw9A.297.268 read from T0547.t06.many.frag # found chain 1qw9A in training set T0547 297 :NDVVFILKN 1qw9A 269 :RSVVAIADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94555 # 1pq1A.297.87 read from T0547.t06.many.frag # found chain 1pq1A in training set T0547 297 :NDVVFILKN 1pq1A 88 :QALREAGDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94556 # 1msk.297.81 read from T0547.t06.many.frag # found chain 1msk in template set T0547 297 :NDVVFILKN 1msk 978 :KDANDMLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94557 # 1hziA.297.113 read from T0547.t06.many.frag # found chain 1hziA in template set T0547 297 :NDVVFILKN 1hziA 114 :ERLKTIMRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94558 # 1fi4A.297.99 read from T0547.t06.many.frag # found chain 1fi4A in template set T0547 297 :NDVVFILKN 1fi4A 80 :RDLRQLRKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94559 # 1wa5C.297.639 read from T0547.t06.many.frag # found chain 1wa5C in template set T0547 297 :NDVVFILKN 1wa5C 640 :DSMMPTFLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94560 # 1cg5B.298.61 read from T0547.t06.many.frag # found chain 1cg5B in training set T0547 298 :DVVFILKNI 1cg5B 62 :KVQRALGEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94561 # 1iruK.298.82 read from T0547.t06.many.frag # found chain 1iruK in template set Warning: unaligning (T0547)I306 (1iruK)C91 because G (3-10) conformation "forbidden" or filtered. T0547 298 :DVVFILKN 1iruK 83 :FTRRNLAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=94562 # 1el6A.298.127 read from T0547.t06.many.frag # found chain 1el6A in template set T0547 298 :DVVFILKNI 1el6A 128 :KVRVALQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94563 # 1pi1A.298.85 read from T0547.t06.many.frag # found chain 1pi1A in template set T0547 298 :DVVFILKNI 1pi1A 96 :YLMTWVQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94564 # 1d0cA.298.173 read from T0547.t06.many.frag # found chain 1d0cA in training set T0547 298 :DVVFILKNI 1d0cA 212 :YICNHIKYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94565 # 1ryp2.298.94 read from T0547.t06.many.frag # found chain 1ryp2 in template set T0547 298 :DVVFILKNI 1ryp2 87 :YLATVMYQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94566 # 7odcA.298.253 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 298 :DVVFILKNI 7odcA 254 :VINPALDKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94567 # 1v4sA.298.114 read from T0547.t06.many.frag # found chain 1v4sA in template set T0547 298 :DVVFILKNI 1v4sA 125 :YISECISDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94568 # 1vj7A.298.219 read from T0547.t06.many.frag # found chain 1vj7A in template set T0547 298 :DVVFILKNI 1vj7A 220 :DIVTKIKSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94569 # 1eexA.298.413 read from T0547.t06.many.frag # found chain 1eexA in training set T0547 298 :DVVFILKNI 1eexA 414 :KAARALQAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94570 # 1yarA.298.114 read from T0547.t06.many.frag # found chain 1yarA in template set T0547 298 :DVVFILKNI 1yarA 115 :RVADQMQQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94571 # 1t0hB.298.196 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 298 :DVVFILKNI 1t0hB 398 :HLADYLEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94572 # 1q9jA.298.305 read from T0547.t06.many.frag # found chain 1q9jA in template set T0547 298 :DVVFILKNI 1q9jA 306 :DIVATLRAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94573 # 1woqA.298.56 read from T0547.t06.many.frag # found chain 1woqA in training set T0547 298 :DVVFILKNI 1woqA 57 :AVALVVAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94574 # 1zr5A.298.170 read from T0547.t06.many.frag # found chain 1zr5A in template set T0547 298 :DVVFILKNI 1zr5A 327 :LILKAISSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94575 # 1ejbA.298.103 read from T0547.t06.many.frag # found chain 1ejbA in template set T0547 298 :DVVFILKNI 1ejbA 104 :STTHALMNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94576 # 1qtwA.298.124 read from T0547.t06.many.frag # found chain 1qtwA in training set T0547 298 :DVVFILKNI 1qtwA 125 :RIAESINIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94577 # 1j24A.298.123 read from T0547.t06.many.frag # found chain 1j24A in training set T0547 298 :DVVFILKNI 1j24A 124 :YIFLIAKRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94578 # 1nw3A.298.196 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 298 :DVVFILKNI 1nw3A 197 :TMDREFRKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=94579 # 1ufyA.298.21 read from T0547.t06.many.frag # found chain 1ufyA in training set T0547 298 :DVVFILKNI 1ufyA 22 :ATRELLLKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=94580 # 1qu9A.298.51 read from T0547.t06.many.frag # found chain 1qu9A in training set T0547 298 :DVVFILKNI 1qu9A 52 :QSLDNVKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94581 # 1knwA.298.246 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 298 :DVVFILKNI 1knwA 247 :LWNAAREQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94582 # 1qw9A.298.269 read from T0547.t06.many.frag # found chain 1qw9A in training set T0547 298 :DVVFILKNI 1qw9A 270 :SVVAIADYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94583 # 1yn9A.298.98 read from T0547.t06.many.frag # found chain 1yn9A in training set T0547 298 :DVVFILKNI 1yn9A 98 :EFIDTVKEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94584 # 1u14A.298.54 read from T0547.t06.many.frag # found chain 1u14A in training set T0547 298 :DVVFILKNI 1u14A 54 :GARNRVDNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94585 # 1n5uA.298.255 read from T0547.t06.many.frag # found chain 1n5uA in template set T0547 298 :DVVFILKNI 1n5uA 256 :DRADLAKYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94586 # 1scfA.298.102 read from T0547.t06.many.frag # found chain 1scfA in template set T0547 298 :DVVFILKNI 1scfA 78 :KLVNIVDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94587 # 1tqhA.298.129 read from T0547.t06.many.frag # found chain 1tqhA in training set T0547 298 :DVVFILKNI 1tqhA 130 :GVLEYAREY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94588 # 1hziA.298.114 read from T0547.t06.many.frag # found chain 1hziA in template set T0547 298 :DVVFILKNI 1hziA 115 :RLKTIMREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94589 # 1msk.298.82 read from T0547.t06.many.frag # found chain 1msk in template set T0547 298 :DVVFILKNI 1msk 979 :DANDMLDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94590 # 1cg5B.299.62 read from T0547.t06.many.frag # found chain 1cg5B in training set T0547 299 :VVFILKNIA 1cg5B 63 :VQRALGEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94591 # 1d0cA.299.174 read from T0547.t06.many.frag # found chain 1d0cA in training set T0547 299 :VVFILKNIA 1d0cA 213 :ICNHIKYAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94592 # 1el6A.299.128 read from T0547.t06.many.frag # found chain 1el6A in template set T0547 299 :VVFILKNIA 1el6A 129 :VRVALQEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94593 # 7odcA.299.254 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A307 (7odcA)F263 because D (zeta) conformation "forbidden" or filtered. T0547 299 :VVFILKNI 7odcA 255 :INPALDKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=94594 # 1pi1A.299.86 read from T0547.t06.many.frag # found chain 1pi1A in template set T0547 299 :VVFILKNIA 1pi1A 97 :LMTWVQDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94595 # 1iruK.299.83 read from T0547.t06.many.frag # found chain 1iruK in template set T0547 299 :VVFILKNIA 1iruK 84 :TRRNLADCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94596 # 1v4sA.299.115 read from T0547.t06.many.frag # found chain 1v4sA in template set T0547 299 :VVFILKNIA 1v4sA 126 :ISECISDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94597 # 1ryp2.299.95 read from T0547.t06.many.frag # found chain 1ryp2 in template set T0547 299 :VVFILKNIA 1ryp2 88 :LATVMYQRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94598 # 1j24A.299.124 read from T0547.t06.many.frag # found chain 1j24A in training set T0547 299 :VVFILKNIA 1j24A 125 :IFLIAKREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94599 # 1woqA.299.57 read from T0547.t06.many.frag # found chain 1woqA in training set T0547 299 :VVFILKNIA 1woqA 58 :VALVVAELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94600 # 1t0hB.299.197 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 299 :VVFILKNIA 1t0hB 399 :LADYLEAYW Number of specific fragments extracted= 1 number of extra gaps= 0 total=94601 # 1u14A.299.55 read from T0547.t06.many.frag # found chain 1u14A in training set T0547 299 :VVFILKNIA 1u14A 55 :ARNRVDNAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94602 # 1n5uA.299.256 read from T0547.t06.many.frag # found chain 1n5uA in template set T0547 299 :VVFILKNIA 1n5uA 257 :RADLAKYIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=94603 # 1qtwA.299.125 read from T0547.t06.many.frag # found chain 1qtwA in training set T0547 299 :VVFILKNIA 1qtwA 126 :IAESINIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94604 # 1eexA.299.414 read from T0547.t06.many.frag # found chain 1eexA in training set T0547 299 :VVFILKNIA 1eexA 415 :AARALQAVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94605 # 1xrsA.299.215 read from T0547.t06.many.frag # found chain 1xrsA in template set T0547 299 :VVFILKNIA 1xrsA 216 :MREALDKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94606 # 1zr5A.299.171 read from T0547.t06.many.frag # found chain 1zr5A in template set T0547 299 :VVFILKNIA 1zr5A 328 :ILKAISSYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94607 # 1yn9A.299.99 read from T0547.t06.many.frag # found chain 1yn9A in training set T0547 299 :VVFILKNIA 1yn9A 99 :FIDTVKEFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94608 # 1vj7A.299.220 read from T0547.t06.many.frag # found chain 1vj7A in template set T0547 299 :VVFILKNIA 1vj7A 221 :IVTKIKSYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94609 # 1msk.299.83 read from T0547.t06.many.frag # found chain 1msk in template set T0547 299 :VVFILKNIA 1msk 980 :ANDMLDKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94610 # 1ufyA.299.22 read from T0547.t06.many.frag # found chain 1ufyA in training set T0547 299 :VVFILKNIA 1ufyA 23 :TRELLLKML Number of specific fragments extracted= 1 number of extra gaps= 0 total=94611 # 1yarA.299.115 read from T0547.t06.many.frag # found chain 1yarA in template set T0547 299 :VVFILKNIA 1yarA 116 :VADQMQQYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94612 # 1nw3A.299.197 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 299 :VVFILKNIA 1nw3A 198 :MDREFRKWM Number of specific fragments extracted= 1 number of extra gaps= 0 total=94613 # 1hziA.299.115 read from T0547.t06.many.frag # found chain 1hziA in template set T0547 299 :VVFILKNIA 1hziA 116 :LKTIMREKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94614 # 1vqvA.299.99 read from T0547.t06.many.frag # found chain 1vqvA in template set T0547 299 :VVFILKNIA 1vqvA 100 :FYIGVKRAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=94615 # 1q9jA.299.306 read from T0547.t06.many.frag # found chain 1q9jA in template set T0547 299 :VVFILKNIA 1q9jA 307 :IVATLRADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94616 # 1tqhA.299.130 read from T0547.t06.many.frag # found chain 1tqhA in training set T0547 299 :VVFILKNIA 1tqhA 131 :VLEYAREYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94617 # 1qw9A.299.270 read from T0547.t06.many.frag # found chain 1qw9A in training set T0547 299 :VVFILKNIA 1qw9A 271 :VVAIADYVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94618 # 1ng6A.299.28 read from T0547.t06.many.frag # found chain 1ng6A in training set T0547 299 :VVFILKNIA 1ng6A 29 :VKASLQNEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94619 # 1tca.299.82 read from T0547.t06.many.frag # found chain 1tca in training set T0547 299 :VVFILKNIA 1tca 83 :MVNAITALY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94620 # 1cg5B.300.63 read from T0547.t06.many.frag # found chain 1cg5B in training set T0547 300 :VFILKNIAE 1cg5B 64 :QRALGEAID Number of specific fragments extracted= 1 number of extra gaps= 0 total=94621 # 1ryp2.300.96 read from T0547.t06.many.frag # found chain 1ryp2 in template set T0547 300 :VFILKNIAE 1ryp2 89 :ATVMYQRRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94622 # 1iruK.300.84 read from T0547.t06.many.frag # found chain 1iruK in template set T0547 300 :VFILKNIAE 1iruK 85 :RRNLADCLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94623 # 1v4sA.300.116 read from T0547.t06.many.frag # found chain 1v4sA in template set T0547 300 :VFILKNIAE 1v4sA 127 :SECISDFLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94624 # 1el6A.300.129 read from T0547.t06.many.frag # found chain 1el6A in template set T0547 300 :VFILKNIAE 1el6A 130 :RVALQEAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94625 # 7odcA.300.255 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A307 (7odcA)F263 because D (zeta) conformation "forbidden" or filtered. T0547 300 :VFILKNI 7odcA 256 :NPALDKY T0547 308 :E 7odcA 264 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=94627 # 1pi1A.300.87 read from T0547.t06.many.frag # found chain 1pi1A in template set T0547 300 :VFILKNIAE 1pi1A 98 :MTWVQDQLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94628 # 1vj7A.300.221 read from T0547.t06.many.frag # found chain 1vj7A in template set T0547 300 :VFILKNIAE 1vj7A 222 :VTKIKSYTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94629 # 1d0cA.300.175 read from T0547.t06.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)E308 (1d0cA)N222 because L (left) conformation "forbidden" or filtered. T0547 300 :VFILKNIA 1d0cA 214 :CNHIKYAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=94630 # 1woqA.300.58 read from T0547.t06.many.frag # found chain 1woqA in training set T0547 300 :VFILKNIAE 1woqA 59 :ALVVAELSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94631 # 1ejbA.300.105 read from T0547.t06.many.frag # found chain 1ejbA in template set T0547 300 :VFILKNIAE 1ejbA 106 :THALMNLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94632 # 1u14A.300.56 read from T0547.t06.many.frag # found chain 1u14A in training set T0547 300 :VFILKNIAE 1u14A 56 :RNRVDNARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94633 # 1t0hB.300.198 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 300 :VFILKNIAE 1t0hB 400 :ADYLEAYWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94634 # 1zr5A.300.172 read from T0547.t06.many.frag # found chain 1zr5A in template set T0547 300 :VFILKNIAE 1zr5A 329 :LKAISSYFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94635 # 1nw3A.300.198 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 300 :VFILKNIAE 1nw3A 199 :DREFRKWMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94636 # 1ufyA.300.23 read from T0547.t06.many.frag # found chain 1ufyA in training set T0547 300 :VFILKNIAE 1ufyA 24 :RELLLKMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94637 # 1yarA.300.116 read from T0547.t06.many.frag # found chain 1yarA in template set T0547 300 :VFILKNIAE 1yarA 117 :ADQMQQYTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94638 # 1eexA.300.415 read from T0547.t06.many.frag # found chain 1eexA in training set T0547 300 :VFILKNIAE 1eexA 416 :ARALQAVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94639 # 1wv8A.300.41 read from T0547.t06.many.frag # found chain 1wv8A in template set T0547 300 :VFILKNIAE 1wv8A 42 :AVMVPELLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94640 # 1n5uA.300.257 read from T0547.t06.many.frag # found chain 1n5uA in template set T0547 300 :VFILKNIAE 1n5uA 258 :ADLAKYICE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94641 # 1j24A.300.125 read from T0547.t06.many.frag # found chain 1j24A in training set T0547 300 :VFILKNIAE 1j24A 126 :FLIAKREQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94642 # 1yt3A.300.310 read from T0547.t06.many.frag # found chain 1yt3A in training set T0547 300 :VFILKNIAE 1yt3A 311 :KSLITDVSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94643 # 1tqhA.300.131 read from T0547.t06.many.frag # found chain 1tqhA in training set T0547 300 :VFILKNIAE 1tqhA 132 :LEYAREYKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94644 # 1wa5C.300.642 read from T0547.t06.many.frag # found chain 1wa5C in template set T0547 300 :VFILKNIAE 1wa5C 643 :MPTFLTVFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94645 # 1msk.300.84 read from T0547.t06.many.frag # found chain 1msk in template set T0547 300 :VFILKNIAE 1msk 981 :NDMLDKLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94646 # 1yn9A.300.100 read from T0547.t06.many.frag # found chain 1yn9A in training set T0547 300 :VFILKNIAE 1yn9A 100 :IDTVKEFTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94647 # 1pjr.300.336 read from T0547.t06.many.frag # found chain 1pjr in template set T0547 300 :VFILKNIAE 1pjr 337 :AGRIREAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94648 # 1xrsA.300.216 read from T0547.t06.many.frag # found chain 1xrsA in template set T0547 300 :VFILKNIAE 1xrsA 217 :REALDKVGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94649 # 1vqvA.300.100 read from T0547.t06.many.frag # found chain 1vqvA in template set T0547 300 :VFILKNIAE 1vqvA 101 :YIGVKRACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94650 # 1l1lA.300.525 read from T0547.t06.many.frag # found chain 1l1lA in training set T0547 300 :VFILKNIAE 1l1lA 526 :VKADQDYSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94651 # 1v4sA.301.117 read from T0547.t06.many.frag # found chain 1v4sA in template set T0547 301 :FILKNIAEQ 1v4sA 128 :ECISDFLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94652 # 1cg5B.301.64 read from T0547.t06.many.frag # found chain 1cg5B in training set T0547 301 :FILKNIAEQ 1cg5B 65 :RALGEAIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94653 # 1ryp2.301.97 read from T0547.t06.many.frag # found chain 1ryp2 in template set T0547 301 :FILKNIAEQ 1ryp2 90 :TVMYQRRSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94654 # 1n5uA.301.258 read from T0547.t06.many.frag # found chain 1n5uA in template set T0547 301 :FILKNIAEQ 1n5uA 259 :DLAKYICEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94655 # 1iruK.301.85 read from T0547.t06.many.frag # found chain 1iruK in template set Warning: unaligning (T0547)Q309 (1iruK)S94 because Y (epsilon') conformation "forbidden" or filtered. T0547 301 :FILKNIAE 1iruK 86 :RNLADCLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=94656 # 1vj7A.301.222 read from T0547.t06.many.frag # found chain 1vj7A in template set T0547 301 :FILKNIAEQ 1vj7A 223 :TKIKSYTTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94657 # 7odcA.301.256 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A307 (7odcA)F263 because D (zeta) conformation "forbidden" or filtered. T0547 301 :FILKNI 7odcA 257 :PALDKY T0547 308 :EQ 7odcA 264 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=94659 # 1woqA.301.59 read from T0547.t06.many.frag # found chain 1woqA in training set T0547 301 :FILKNIAEQ 1woqA 60 :LVVAELSAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94660 # 1el6A.301.130 read from T0547.t06.many.frag # found chain 1el6A in template set T0547 301 :FILKNIAEQ 1el6A 131 :VALQEAIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94661 # 1tqhA.301.132 read from T0547.t06.many.frag # found chain 1tqhA in training set T0547 301 :FILKNIAEQ 1tqhA 133 :EYAREYKKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94662 # 1nw3A.301.199 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 301 :FILKNIAEQ 1nw3A 200 :REFRKWMKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=94663 # 1d0cA.301.176 read from T0547.t06.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)Q309 (1d0cA)R223 because L (left) conformation "forbidden" or filtered. T0547 301 :FILKNIAE 1d0cA 215 :NHIKYATN Number of specific fragments extracted= 1 number of extra gaps= 1 total=94664 # 1wv8A.301.42 read from T0547.t06.many.frag # found chain 1wv8A in template set T0547 301 :FILKNIAEQ 1wv8A 43 :VMVPELLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94665 # 1t0hB.301.199 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 301 :FILKNIAEQ 1t0hB 401 :DYLEAYWKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94666 # 1wa5C.301.643 read from T0547.t06.many.frag # found chain 1wa5C in template set T0547 301 :FILKNIAEQ 1wa5C 644 :PTFLTVFSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94667 # 1ejbA.301.106 read from T0547.t06.many.frag # found chain 1ejbA in template set T0547 301 :FILKNIAEQ 1ejbA 107 :HALMNLQEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94668 # 1xpjA.301.66 read from T0547.t06.many.frag # found chain 1xpjA in template set T0547 301 :FILKNIAEQ 1xpjA 67 :PIITEWLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94669 # 1yn9A.301.101 read from T0547.t06.many.frag # found chain 1yn9A in training set T0547 301 :FILKNIAEQ 1yn9A 101 :DTVKEFTEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94670 # 1l1lA.301.526 read from T0547.t06.many.frag # found chain 1l1lA in training set T0547 301 :FILKNIAEQ 1l1lA 527 :KADQDYSKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94671 # 1u14A.301.57 read from T0547.t06.many.frag # found chain 1u14A in training set T0547 301 :FILKNIAEQ 1u14A 57 :NRVDNARRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94672 # 1vqvA.301.101 read from T0547.t06.many.frag # found chain 1vqvA in template set T0547 301 :FILKNIAEQ 1vqvA 102 :IGVKRACEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94673 # 1eexA.301.416 read from T0547.t06.many.frag # found chain 1eexA in training set T0547 301 :FILKNIAEQ 1eexA 417 :RALQAVFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94674 # 1yt3A.301.311 read from T0547.t06.many.frag # found chain 1yt3A in training set T0547 301 :FILKNIAEQ 1yt3A 312 :SLITDVSET Number of specific fragments extracted= 1 number of extra gaps= 0 total=94675 # 1xrsA.301.217 read from T0547.t06.many.frag # found chain 1xrsA in template set T0547 301 :FILKNIAEQ 1xrsA 218 :EALDKVGAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94676 # 1aocA.301.31 read from T0547.t06.many.frag # found chain 1aocA in template set T0547 301 :FILKNIAEQ 1aocA 32 :KAVEAVAQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94677 # 2ewcA.301.46 read from T0547.t06.many.frag # found chain 2ewcA in template set T0547 301 :FILKNIAEQ 2ewcA 47 :DEMERRLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94678 # 1zr5A.301.173 read from T0547.t06.many.frag # found chain 1zr5A in template set T0547 301 :FILKNIAEQ 1zr5A 330 :KAISSYFVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94679 # 1msk.301.85 read from T0547.t06.many.frag # found chain 1msk in template set T0547 301 :FILKNIAEQ 1msk 982 :DMLDKLSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94680 # 1pi1A.301.88 read from T0547.t06.many.frag # found chain 1pi1A in template set T0547 301 :FILKNIAEQ 1pi1A 99 :TWVQDQLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94681 # 1tca.301.84 read from T0547.t06.many.frag # found chain 1tca in training set T0547 301 :FILKNIAEQ 1tca 85 :NAITALYAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94682 # 1v4sA.302.118 read from T0547.t06.many.frag # found chain 1v4sA in template set T0547 302 :ILKNIAEQK 1v4sA 129 :CISDFLDKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=94683 # 1n5uA.302.259 read from T0547.t06.many.frag # found chain 1n5uA in template set T0547 302 :ILKNIAEQK 1n5uA 260 :LAKYICENQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94684 # 1cg5B.302.65 read from T0547.t06.many.frag # found chain 1cg5B in training set Warning: unaligning (T0547)Q309 (1cg5B)D73 because D (zeta) conformation "forbidden" or filtered. T0547 302 :ILKNIAE 1cg5B 66 :ALGEAID T0547 310 :K 1cg5B 74 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=94686 # 1ryp2.302.98 read from T0547.t06.many.frag # found chain 1ryp2 in template set T0547 302 :ILKNIAEQK 1ryp2 91 :VMYQRRSKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=94687 # 1wv8A.302.43 read from T0547.t06.many.frag # found chain 1wv8A in template set T0547 302 :ILKNIAEQK 1wv8A 44 :MVPELLEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94688 # 1tqhA.302.133 read from T0547.t06.many.frag # found chain 1tqhA in training set T0547 302 :ILKNIAEQK 1tqhA 134 :YAREYKKRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94689 # 1el6A.302.131 read from T0547.t06.many.frag # found chain 1el6A in template set T0547 302 :ILKNIAEQK 1el6A 132 :ALQEAIASF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94690 # 1i88A.302.281 read from T0547.t06.many.frag # found chain 1i88A in training set Warning: unaligning (T0547)K310 (1i88A)L290 because G (3-10) conformation "forbidden" or filtered. T0547 302 :ILKNIAEQ 1i88A 282 :ALVEAFEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=94691 # 7odcA.302.257 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A307 (7odcA)F263 because D (zeta) conformation "forbidden" or filtered. T0547 302 :ILKNI 7odcA 258 :ALDKY T0547 308 :EQK 7odcA 264 :PSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=94693 # 1zr5A.302.174 read from T0547.t06.many.frag # found chain 1zr5A in template set T0547 302 :ILKNIAEQK 1zr5A 331 :AISSYFVST Number of specific fragments extracted= 1 number of extra gaps= 0 total=94694 # 1iruK.302.86 read from T0547.t06.many.frag # found chain 1iruK in template set T0547 302 :ILKNIAEQK 1iruK 87 :NLADCLRSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94695 # 1nw3A.302.200 read from T0547.t06.many.frag # found chain 1nw3A in template set Warning: unaligning (T0547)K310 (1nw3A)Y209 because G (3-10) conformation "forbidden" or filtered. T0547 302 :ILKNIAEQ 1nw3A 201 :EFRKWMKW Number of specific fragments extracted= 1 number of extra gaps= 1 total=94696 # 1xpjA.302.67 read from T0547.t06.many.frag # found chain 1xpjA in template set T0547 302 :ILKNIAEQK 1xpjA 68 :IITEWLDKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=94697 # 1vj7A.302.223 read from T0547.t06.many.frag # found chain 1vj7A in template set T0547 302 :ILKNIAEQK 1vj7A 224 :KIKSYTTEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94698 # 1vqvA.302.102 read from T0547.t06.many.frag # found chain 1vqvA in template set T0547 302 :ILKNIAEQK 1vqvA 103 :GVKRACEFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94699 # 1woqA.302.60 read from T0547.t06.many.frag # found chain 1woqA in training set T0547 302 :ILKNIAEQK 1woqA 61 :VVAELSARP Number of specific fragments extracted= 1 number of extra gaps= 0 total=94700 # 1wa5C.302.644 read from T0547.t06.many.frag # found chain 1wa5C in template set Warning: unaligning (T0547)K310 (1wa5C)D653 because L (left) conformation "forbidden" or filtered. T0547 302 :ILKNIAEQ 1wa5C 645 :TFLTVFSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=94701 # 1eexA.302.417 read from T0547.t06.many.frag # found chain 1eexA in training set T0547 302 :ILKNIAEQK 1eexA 418 :ALQAVFAGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=94702 # 1ejbA.302.107 read from T0547.t06.many.frag # found chain 1ejbA in template set T0547 302 :ILKNIAEQK 1ejbA 108 :ALMNLQEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94703 # 2ewcA.302.47 read from T0547.t06.many.frag # found chain 2ewcA in template set T0547 302 :ILKNIAEQK 2ewcA 48 :EMERRLALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94704 # 1esc.302.229 read from T0547.t06.many.frag # found chain 1esc in template set T0547 302 :ILKNIAEQK 1esc 230 :AMKKAAADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94705 # 1t0hB.302.200 read from T0547.t06.many.frag # found chain 1t0hB in template set T0547 302 :ILKNIAEQK 1t0hB 402 :YLEAYWKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94706 # 1ufyA.302.25 read from T0547.t06.many.frag # found chain 1ufyA in training set T0547 302 :ILKNIAEQK 1ufyA 26 :LLLKMLEAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94707 # 1nv8A.302.229 read from T0547.t06.many.frag # found chain 1nv8A in template set T0547 302 :ILKNIAEQK 1nv8A 228 :FYREFFGRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=94708 # 1l1lA.302.527 read from T0547.t06.many.frag # found chain 1l1lA in training set T0547 302 :ILKNIAEQK 1l1lA 528 :ADQDYSKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94709 # 1kr7A.302.85 read from T0547.t06.many.frag # found chain 1kr7A in training set T0547 302 :ILKNIAEQK 1kr7A 85 :CLAKACSAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=94710 # 1w66A.302.113 read from T0547.t06.many.frag # found chain 1w66A in training set T0547 302 :ILKNIAEQK 1w66A 112 :SLIQVCADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94711 # 1pi1A.302.89 read from T0547.t06.many.frag # found chain 1pi1A in template set T0547 302 :ILKNIAEQK 1pi1A 100 :WVQDQLDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=94712 # 1wleA.302.356 read from T0547.t06.many.frag # found chain 1wleA in training set T0547 302 :ILKNIAEQK 1wleA 357 :LQMEILTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94713 # 1aocA.302.32 read from T0547.t06.many.frag # found chain 1aocA in template set T0547 302 :ILKNIAEQK 1aocA 33 :AVEAVAQES Number of specific fragments extracted= 1 number of extra gaps= 0 total=94714 # 1v4sA.303.119 read from T0547.t06.many.frag # found chain 1v4sA in template set T0547 303 :LKNIAEQKK 1v4sA 130 :ISDFLDKHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94715 # 1cg5B.303.66 read from T0547.t06.many.frag # found chain 1cg5B in training set T0547 303 :LKNIAEQKK 1cg5B 67 :LGEAIDDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94716 # 1n5uA.303.260 read from T0547.t06.many.frag # found chain 1n5uA in template set T0547 303 :LKNIAEQKK 1n5uA 261 :AKYICENQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94717 # 1tca.303.86 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)K310 (1tca)S94 because G (3-10) conformation "forbidden" or filtered. T0547 303 :LKNIAEQ 1tca 87 :ITALYAG T0547 311 :K 1tca 95 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=94719 # 1i88A.303.282 read from T0547.t06.many.frag # found chain 1i88A in training set Warning: unaligning (T0547)K311 (1i88A)G291 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1i88A 283 :LVEAFEPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=94720 # 1xpjA.303.68 read from T0547.t06.many.frag # found chain 1xpjA in template set Warning: unaligning (T0547)K311 (1xpjA)Q77 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1xpjA 69 :ITEWLDKH Number of specific fragments extracted= 1 number of extra gaps= 1 total=94721 # 1tqhA.303.134 read from T0547.t06.many.frag # found chain 1tqhA in training set Warning: unaligning (T0547)K311 (1tqhA)G143 because T (delta_L) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1tqhA 135 :AREYKKRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=94722 # 1wv8A.303.44 read from T0547.t06.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)K311 (1wv8A)G53 because N (gamma') conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1wv8A 45 :VPELLEEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=94723 # 1ryp2.303.99 read from T0547.t06.many.frag # found chain 1ryp2 in template set T0547 303 :LKNIAEQKK 1ryp2 92 :MYQRRSKMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94724 # 1aocA.303.33 read from T0547.t06.many.frag # found chain 1aocA in template set T0547 303 :LKNIAEQKK 1aocA 34 :VEAVAQESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94725 # 1vqvA.303.103 read from T0547.t06.many.frag # found chain 1vqvA in template set Warning: unaligning (T0547)K311 (1vqvA)K112 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1vqvA 104 :VKRACEFY Number of specific fragments extracted= 1 number of extra gaps= 1 total=94726 # 1kr7A.303.86 read from T0547.t06.many.frag # found chain 1kr7A in training set Warning: unaligning (T0547)K311 (1kr7A)G94 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1kr7A 86 :LAKACSAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=94727 # 1ufyA.303.26 read from T0547.t06.many.frag # found chain 1ufyA in training set Warning: unaligning (T0547)K311 (1ufyA)G35 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1ufyA 27 :LLKMLEAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=94728 # 1nv8A.303.230 read from T0547.t06.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)K310 (1nv8A)Y236 because E (beta_S) conformation "forbidden" or filtered. T0547 303 :LKNIAEQ 1nv8A 229 :YREFFGR T0547 311 :K 1nv8A 237 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=94730 # 1ejbA.303.108 read from T0547.t06.many.frag # found chain 1ejbA in template set T0547 303 :LKNIAEQKK 1ejbA 109 :LMNLQEKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=94731 # 1w66A.303.114 read from T0547.t06.many.frag # found chain 1w66A in training set Warning: unaligning (T0547)K311 (1w66A)G121 because T (delta_L) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1w66A 113 :LIQVCADL Number of specific fragments extracted= 1 number of extra gaps= 1 total=94732 # 1l1lA.303.528 read from T0547.t06.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)K311 (1l1lA)G537 because T (delta_L) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1l1lA 529 :DQDYSKTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=94733 # 1el6A.303.132 read from T0547.t06.many.frag # found chain 1el6A in template set Warning: unaligning (T0547)K310 (1el6A)F140 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQ 1el6A 133 :LQEAIAS T0547 311 :K 1el6A 141 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=94735 # 1jyhA.303.32 read from T0547.t06.many.frag # found chain 1jyhA in training set T0547 303 :LKNIAEQKK 1jyhA 33 :LMMWVDSKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=94736 # 1eexA.303.418 read from T0547.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)K310 (1eexA)M426 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1eexA)G427 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIAEQ 1eexA 419 :LQAVFAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=94737 # 1t0hB.303.201 read from T0547.t06.many.frag # found chain 1t0hB in template set Warning: unaligning (T0547)K311 (1t0hB)H411 because D (zeta) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1t0hB 403 :LEAYWKAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=94738 # 1nw3A.303.201 read from T0547.t06.many.frag # found chain 1nw3A in template set T0547 303 :LKNIAEQKK 1nw3A 202 :FRKWMKWYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94739 # 1zc6A.303.59 read from T0547.t06.many.frag # found chain 1zc6A in template set T0547 303 :LKNIAEQKK 1zc6A 60 :LEAAFQQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94740 # 2f5gA.303.39 read from T0547.t06.many.frag # found chain 2f5gA in training set Warning: unaligning (T0547)K311 (2f5gA)G48 because T (delta_L) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 2f5gA 40 :LKSIAEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=94741 # 1zr5A.303.175 read from T0547.t06.many.frag # found chain 1zr5A in template set T0547 303 :LKNIAEQKK 1zr5A 332 :ISSYFVSTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=94742 # 1qsgA.303.172 read from T0547.t06.many.frag # found chain 1qsgA in training set T0547 303 :LKNIAEQKK 1qsgA 170 :VRYMANAMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94743 # 1s4bP.303.301 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 303 :LKNIAEQKK 1s4bP 317 :KRAECERRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94744 # 1esc.303.230 read from T0547.t06.many.frag # found chain 1esc in template set Warning: unaligning (T0547)K311 (1esc)G239 because T (delta_L) conformation "forbidden" or filtered. T0547 303 :LKNIAEQK 1esc 231 :MKKAAADG Number of specific fragments extracted= 1 number of extra gaps= 1 total=94745 # 1iruK.303.87 read from T0547.t06.many.frag # found chain 1iruK in template set Warning: unaligning (T0547)Q309 (1iruK)S94 because Y (epsilon') conformation "forbidden" or filtered. T0547 303 :LKNIAE 1iruK 88 :LADCLR T0547 310 :KK 1iruK 95 :RT Number of specific fragments extracted= 2 number of extra gaps= 1 total=94747 # 1d0cA.303.178 read from T0547.t06.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)E308 (1d0cA)N222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q309 (1d0cA)R223 because L (left) conformation "forbidden" or filtered. T0547 303 :LKNIA 1d0cA 217 :IKYAT T0547 310 :KK 1d0cA 224 :GN Number of specific fragments extracted= 2 number of extra gaps= 1 total=94749 # 1v4sA.304.120 read from T0547.t06.many.frag # found chain 1v4sA in template set T0547 304 :KNIAEQKKD 1v4sA 131 :SDFLDKHQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=94750 # 1wv8A.304.45 read from T0547.t06.many.frag # found chain 1wv8A in template set T0547 304 :KNIAEQKKD 1wv8A 46 :PELLEENGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94751 # 1kr7A.304.87 read from T0547.t06.many.frag # found chain 1kr7A in training set Warning: unaligning (T0547)K310 (1kr7A)H93 because G (3-10) conformation "forbidden" or filtered. T0547 304 :KNIAEQ 1kr7A 87 :AKACSA T0547 311 :KD 1kr7A 94 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=94753 # 1i88A.304.283 read from T0547.t06.many.frag # found chain 1i88A in training set T0547 304 :KNIAEQKKD 1i88A 284 :VEAFEPLGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=94754 # 1xpjA.304.69 read from T0547.t06.many.frag # found chain 1xpjA in template set Warning: unaligning (T0547)K311 (1xpjA)Q77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1xpjA)V78 because P (beta_P) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1xpjA 70 :TEWLDKH Number of specific fragments extracted= 1 number of extra gaps= 1 total=94755 # 1cg5B.304.67 read from T0547.t06.many.frag # found chain 1cg5B in training set T0547 304 :KNIAEQKKD 1cg5B 68 :GEAIDDLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94756 # 1aocA.304.34 read from T0547.t06.many.frag # found chain 1aocA in template set T0547 304 :KNIAEQKKD 1aocA 35 :EAVAQESGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94757 # 1w66A.304.115 read from T0547.t06.many.frag # found chain 1w66A in training set T0547 304 :KNIAEQKKD 1w66A 114 :IQVCADLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94758 # 1nv8A.304.231 read from T0547.t06.many.frag # found chain 1nv8A in template set T0547 304 :KNIAEQKKD 1nv8A 230 :REFFGRYDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94759 # 1zc6A.304.60 read from T0547.t06.many.frag # found chain 1zc6A in template set T0547 304 :KNIAEQKKD 1zc6A 61 :EAAFQQAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94760 # 1jyhA.304.33 read from T0547.t06.many.frag # found chain 1jyhA in training set Warning: unaligning (T0547)K311 (1jyhA)N41 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1jyhA 34 :MMWVDSK T0547 312 :D 1jyhA 42 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=94762 # 1tca.304.87 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)K311 (1tca)G95 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1tca 88 :TALYAGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=94763 # 1q7lB.304.7 read from T0547.t06.many.frag # found chain 1q7lB in training set Warning: unaligning (T0547)K311 (1q7lB)N335 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1q7lB)L336 because P (beta_P) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1q7lB 328 :SRVCKDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=94764 # 1el6A.304.133 read from T0547.t06.many.frag # found chain 1el6A in template set Warning: unaligning (T0547)D312 (1el6A)A142 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQKK 1el6A 134 :QEAIASFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=94765 # 2a2lA.304.24 read from T0547.t06.many.frag # found chain 2a2lA in template set Warning: unaligning (T0547)K311 (2a2lA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (2a2lA)V34 because E (beta_S) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 2a2lA 26 :EKKATEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=94766 # 2bjvA.304.194 read from T0547.t06.many.frag # found chain 2bjvA in training set T0547 304 :KNIAEQKKD 2bjvA 195 :IQMCREIKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94767 # 1esc.304.231 read from T0547.t06.many.frag # found chain 1esc in template set T0547 304 :KNIAEQKKD 1esc 232 :KKAAADGGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=94768 # 1vqvA.304.104 read from T0547.t06.many.frag # found chain 1vqvA in template set Warning: unaligning (T0547)D312 (1vqvA)C113 because Y (epsilon') conformation "forbidden" or filtered. T0547 304 :KNIAEQKK 1vqvA 105 :KRACEFYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=94769 # 1fp2A.304.324 read from T0547.t06.many.frag # found chain 1fp2A in training set T0547 304 :KNIAEQKKD 1fp2A 325 :KKLFIEAGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94770 # 1e19A.304.97 read from T0547.t06.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)K311 (1e19A)G105 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1e19A 98 :KNELRKR T0547 312 :D 1e19A 106 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=94772 # 1s4bP.304.302 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 304 :KNIAEQKKD 1s4bP 318 :RAECERRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94773 # 1gwyA.304.17 read from T0547.t06.many.frag # found chain 1gwyA in training set Warning: unaligning (T0547)K311 (1gwyA)G25 because S (epsilon) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1gwyA 18 :DKVLEEL T0547 312 :D 1gwyA 26 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=94775 # 1ryp2.304.100 read from T0547.t06.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0547)K310 (1ryp2)M99 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQ 1ryp2 93 :YQRRSK T0547 311 :KD 1ryp2 100 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=94777 # 1y8aA.304.212 read from T0547.t06.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1y8aA 191 :RGYCESK T0547 312 :D 1y8aA 199 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=94779 # 1n5uA.304.261 read from T0547.t06.many.frag # found chain 1n5uA in template set T0547 304 :KNIAEQKKD 1n5uA 262 :KYICENQDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94780 # 1vj7A.304.225 read from T0547.t06.many.frag # found chain 1vj7A in template set Warning: unaligning (T0547)K310 (1vj7A)Q232 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1vj7A)G233 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQ 1vj7A 226 :KSYTTE T0547 312 :D 1vj7A 234 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=94782 # 1eexA.304.419 read from T0547.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)K311 (1eexA)G427 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1eexA 420 :QAVFAGM T0547 312 :D 1eexA 428 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=94784 # 2f5gA.304.40 read from T0547.t06.many.frag # found chain 2f5gA in training set T0547 304 :KNIAEQKKD 2f5gA 41 :KSIAEELGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=94785 # 1wleA.304.358 read from T0547.t06.many.frag # found chain 1wleA in training set Warning: unaligning (T0547)K310 (1wleA)L365 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1wleA)G366 because L (left) conformation "forbidden" or filtered. T0547 304 :KNIAEQ 1wleA 359 :MEILTE T0547 312 :D 1wleA 367 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=94787 # 1jg1A.304.130 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)K311 (1jg1A)G138 because T (delta_L) conformation "forbidden" or filtered. T0547 304 :KNIAEQK 1jg1A 131 :KRNLERA T0547 312 :D 1jg1A 139 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=94789 # 1kr7A.305.88 read from T0547.t06.many.frag # found chain 1kr7A in training set T0547 305 :NIAEQKKDL 1kr7A 88 :KACSAHGAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=94790 # 1xpjA.305.70 read from T0547.t06.many.frag # found chain 1xpjA in template set T0547 305 :NIAEQKKDL 1xpjA 71 :EWLDKHQVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=94791 # 1gwyA.305.18 read from T0547.t06.many.frag # found chain 1gwyA in training set T0547 305 :NIAEQKKDL 1gwyA 19 :KVLEELGKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94792 # 1fp2A.305.325 read from T0547.t06.many.frag # found chain 1fp2A in training set T0547 305 :NIAEQKKDL 1fp2A 326 :KLFIEAGFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=94793 # 1nv8A.305.232 read from T0547.t06.many.frag # found chain 1nv8A in template set Warning: unaligning (T0547)K310 (1nv8A)Y236 because E (beta_S) conformation "forbidden" or filtered. T0547 305 :NIAEQ 1nv8A 231 :EFFGR T0547 311 :KDL 1nv8A 237 :DTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=94795 # 1tca.305.88 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQKK 1tca 89 :ALYAGSG T0547 313 :L 1tca 97 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=94797 # 1wv8A.305.46 read from T0547.t06.many.frag # found chain 1wv8A in template set Warning: unaligning (T0547)L313 (1wv8A)A55 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQKKD 1wv8A 47 :ELLEENGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=94798 # 1ylxA.305.21 read from T0547.t06.many.frag # found chain 1ylxA in training set Warning: unaligning (T0547)K311 (1ylxA)G25 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1ylxA 19 :PMMEAY T0547 312 :DL 1ylxA 26 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=94800 # 1aocA.305.35 read from T0547.t06.many.frag # found chain 1aocA in template set Warning: unaligning (T0547)K311 (1aocA)G42 because T (delta_L) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1aocA 36 :AVAQES T0547 312 :DL 1aocA 43 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=94802 # 1s4bP.305.303 read from T0547.t06.many.frag # found chain 1s4bP in template set Warning: unaligning (T0547)K311 (1s4bP)G325 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1s4bP 319 :AECERR T0547 312 :DL 1s4bP 326 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=94804 # 1xkpB.305.9 read from T0547.t06.many.frag # found chain 1xkpB in training set Warning: unaligning (T0547)K311 (1xkpB)G16 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1xkpB 10 :HFCQDL T0547 312 :DL 1xkpB 17 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=94806 # 2bjvA.305.195 read from T0547.t06.many.frag # found chain 2bjvA in training set Warning: unaligning (T0547)K311 (2bjvA)K202 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 2bjvA 196 :QMCREI T0547 312 :DL 2bjvA 203 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=94808 # 1q7lB.305.8 read from T0547.t06.many.frag # found chain 1q7lB in training set Warning: unaligning (T0547)D312 (1q7lB)L336 because P (beta_P) conformation "forbidden" or filtered. T0547 305 :NIAEQKK 1q7lB 329 :RVCKDMN T0547 313 :L 1q7lB 337 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=94810 # 1w66A.305.116 read from T0547.t06.many.frag # found chain 1w66A in training set T0547 305 :NIAEQKKDL 1w66A 115 :QVCADLGLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=94811 # 1e19A.305.98 read from T0547.t06.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)D312 (1e19A)M106 because E (beta_S) conformation "forbidden" or filtered. T0547 305 :NIAEQKK 1e19A 99 :NELRKRG T0547 313 :L 1e19A 107 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=94813 # 1v4sA.305.121 read from T0547.t06.many.frag # found chain 1v4sA in template set Warning: unaligning (T0547)K310 (1v4sA)H137 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1v4sA)Q138 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQ 1v4sA 132 :DFLDK T0547 312 :DL 1v4sA 139 :MK Number of specific fragments extracted= 2 number of extra gaps= 1 total=94815 # 1ysrA.305.56 read from T0547.t06.many.frag # found chain 1ysrA in training set Warning: unaligning (T0547)K311 (1ysrA)G359 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1ysrA 353 :NAVKHG T0547 312 :DL 1ysrA 360 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=94817 # 1i88A.305.284 read from T0547.t06.many.frag # found chain 1i88A in training set Warning: unaligning (T0547)K311 (1i88A)G291 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1i88A 285 :EAFEPL T0547 312 :DL 1i88A 292 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=94819 # 1eexA.305.420 read from T0547.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)K311 (1eexA)G427 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1eexA 421 :AVFAGM T0547 312 :DL 1eexA 428 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=94821 # 1k8qA.305.136 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)K311 (1k8qA)G143 because T (delta_L) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1k8qA 137 :FILKKT T0547 312 :DL 1k8qA 144 :QD Number of specific fragments extracted= 2 number of extra gaps= 1 total=94823 # 1n81A.305.58 read from T0547.t06.many.frag # found chain 1n81A in template set Warning: unaligning (T0547)K311 (1n81A)N85 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1n81A 79 :KNQNRY T0547 312 :DL 1n81A 86 :YF Number of specific fragments extracted= 2 number of extra gaps= 1 total=94825 # 1ufyA.305.28 read from T0547.t06.many.frag # found chain 1ufyA in training set Warning: unaligning (T0547)K311 (1ufyA)G35 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1ufyA)I36 because P (beta_P) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1ufyA 29 :KMLEAN T0547 313 :L 1ufyA 37 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=94827 # 1uxoA.305.148 read from T0547.t06.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)K311 (1uxoA)D153 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1uxoA 147 :DLAQQI T0547 312 :DL 1uxoA 154 :AA Number of specific fragments extracted= 2 number of extra gaps= 1 total=94829 # 2a2lA.305.25 read from T0547.t06.many.frag # found chain 2a2lA in template set Warning: unaligning (T0547)K310 (2a2lA)I32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (2a2lA)N33 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQ 2a2lA 27 :KKATE T0547 312 :DL 2a2lA 34 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=94831 # 1esc.305.232 read from T0547.t06.many.frag # found chain 1esc in template set Warning: unaligning (T0547)K311 (1esc)G239 because T (delta_L) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1esc 233 :KAAADG T0547 312 :DL 1esc 240 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=94833 # 1n3lA.305.196 read from T0547.t06.many.frag # found chain 1n3lA in training set T0547 305 :NIAEQKKDL 1n3lA 197 :KYLPALGYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94834 # 1jg1A.305.131 read from T0547.t06.many.frag # found chain 1jg1A in training set T0547 305 :NIAEQKKDL 1jg1A 132 :RNLERAGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94835 # 1qd1A.305.112 read from T0547.t06.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)K311 (1qd1A)G120 because L (left) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1qd1A 114 :RLAEEL T0547 312 :DL 1qd1A 121 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=94837 # 1l1lA.305.530 read from T0547.t06.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)K311 (1l1lA)G537 because T (delta_L) conformation "forbidden" or filtered. T0547 305 :NIAEQK 1l1lA 531 :DYSKTL T0547 312 :DL 1l1lA 538 :CN Number of specific fragments extracted= 2 number of extra gaps= 1 total=94839 # 1ukkA.305.63 read from T0547.t06.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)K310 (1ukkA)E69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1ukkA)G70 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1ukkA)F71 because D (zeta) conformation "forbidden" or filtered. T0547 305 :NIAEQ 1ukkA 64 :ASLER T0547 313 :L 1ukkA 72 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=94841 # 1fp2A.306.326 read from T0547.t06.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)D312 (1fp2A)F333 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1fp2A)H335 because Y (epsilon') conformation "forbidden" or filtered. T0547 306 :IAEQKK 1fp2A 327 :LFIEAG T0547 313 :L 1fp2A 334 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=94843 # 1kr7A.306.89 read from T0547.t06.many.frag # found chain 1kr7A in training set Warning: unaligning (T0547)K311 (1kr7A)G94 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQK 1kr7A 89 :ACSAH T0547 312 :DLE 1kr7A 95 :APD Number of specific fragments extracted= 2 number of extra gaps= 1 total=94845 # 1ukkA.306.64 read from T0547.t06.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)K311 (1ukkA)G70 because T (delta_L) conformation "forbidden" or filtered. T0547 306 :IAEQK 1ukkA 65 :SLERE T0547 312 :DLE 1ukkA 71 :FPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=94847 # 1jg1A.306.132 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)K310 (1jg1A)A137 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1jg1A)G138 because T (delta_L) conformation "forbidden" or filtered. T0547 306 :IAEQ 1jg1A 133 :NLER T0547 312 :DLE 1jg1A 139 :VKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=94849 # 1tca.306.89 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQKK 1tca 90 :LYAGSG T0547 313 :LE 1tca 97 :NK Number of specific fragments extracted= 2 number of extra gaps= 1 total=94851 # 1ylxA.306.22 read from T0547.t06.many.frag # found chain 1ylxA in training set Warning: unaligning (T0547)K311 (1ylxA)G25 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQK 1ylxA 20 :MMEAY T0547 312 :DLE 1ylxA 26 :LDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=94853 # 1gwyA.306.19 read from T0547.t06.many.frag # found chain 1gwyA in training set T0547 306 :IAEQKKDLE 1gwyA 20 :VLEELGKVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94854 # 1xpjA.306.71 read from T0547.t06.many.frag # found chain 1xpjA in template set Warning: unaligning (T0547)K311 (1xpjA)Q77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1xpjA)V78 because P (beta_P) conformation "forbidden" or filtered. T0547 306 :IAEQK 1xpjA 72 :WLDKH T0547 313 :LE 1xpjA 79 :PY Number of specific fragments extracted= 2 number of extra gaps= 1 total=94856 # 1y8aA.306.214 read from T0547.t06.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1y8aA)I199 because N (gamma') conformation "forbidden" or filtered. T0547 306 :IAEQK 1y8aA 193 :YCESK T0547 313 :LE 1y8aA 200 :DF Number of specific fragments extracted= 2 number of extra gaps= 1 total=94858 # 2b61A.306.145 read from T0547.t06.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)K311 (2b61A)G132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2b61A)H135 because Y (epsilon') conformation "forbidden" or filtered. T0547 306 :IAEQK 2b61A 127 :LLEHL T0547 312 :DL 2b61A 133 :IS Number of specific fragments extracted= 2 number of extra gaps= 2 total=94860 # 1k8qA.306.137 read from T0547.t06.many.frag # found chain 1k8qA in template set T0547 306 :IAEQKKDLE 1k8qA 138 :ILKKTGQDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94861 # 1lu4A.306.90 read from T0547.t06.many.frag # found chain 1lu4A in training set Warning: unaligning (T0547)A307 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1lu4A)A1093 Warning: unaligning (T0547)E308 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1lu4A)A1093 Warning: unaligning (T0547)K311 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1lu4A)V1097 Warning: unaligning (T0547)D312 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1lu4A)V1097 Warning: unaligning (T0547)L313 because of BadResidue code BAD_PEPTIDE at template residue (1lu4A)P1098 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE at template residue (1lu4A)W1099 T0547 306 :I 1lu4A 1091 :I T0547 309 :QK 1lu4A 1094 :RY Number of specific fragments extracted= 2 number of extra gaps= 2 total=94863 # 1ysrA.306.57 read from T0547.t06.many.frag # found chain 1ysrA in training set T0547 306 :IAEQKKDLE 1ysrA 354 :AVKHGGATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94864 # 1xkpB.306.10 read from T0547.t06.many.frag # found chain 1xkpB in training set T0547 306 :IAEQKKDLE 1xkpB 11 :FCQDLGVPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=94865 # 1di2A.306.8 read from T0547.t06.many.frag # found chain 1di2A in template set Warning: unaligning (T0547)K311 (1di2A)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 306 :IAEQK 1di2A 120 :LAVQK T0547 312 :DLE 1di2A 126 :WRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=94867 # 1s4bP.306.304 read from T0547.t06.many.frag # found chain 1s4bP in template set Warning: unaligning (T0547)K311 (1s4bP)G325 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQK 1s4bP 320 :ECERR T0547 312 :DLE 1s4bP 326 :LPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=94869 # 1n3lA.306.197 read from T0547.t06.many.frag # found chain 1n3lA in training set T0547 306 :IAEQKKDLE 1n3lA 198 :YLPALGYSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=94870 # 1e19A.306.99 read from T0547.t06.many.frag # found chain 1e19A in training set Warning: unaligning (T0547)K311 (1e19A)G105 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQK 1e19A 100 :ELRKR T0547 312 :DLE 1e19A 106 :MEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=94872 # 1t13A.306.100 read from T0547.t06.many.frag # found chain 1t13A in template set Warning: unaligning (T0547)K311 (1t13A)E108 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQK 1t13A 103 :VQLET T0547 312 :DLE 1t13A 109 :VPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=94874 # 2bjvA.306.196 read from T0547.t06.many.frag # found chain 2bjvA in training set T0547 306 :IAEQKKDLE 2bjvA 197 :MCREIKLPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=94875 # 1nv8A.306.233 read from T0547.t06.many.frag # found chain 1nv8A in template set T0547 306 :IAEQKKDLE 1nv8A 232 :FFGRYDTSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=94876 # 1i88A.306.285 read from T0547.t06.many.frag # found chain 1i88A in training set Warning: unaligning (T0547)K311 (1i88A)G291 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1i88A)I292 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1i88A)D294 because N (gamma') conformation "forbidden" or filtered. T0547 306 :IAEQK 1i88A 286 :AFEPL T0547 313 :L 1i88A 293 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=94878 # 1eexA.306.421 read from T0547.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)K311 (1eexA)G427 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1eexA)P430 because P (beta_P) conformation "forbidden" or filtered. T0547 306 :IAEQK 1eexA 422 :VFAGM T0547 312 :DL 1eexA 428 :LP Number of specific fragments extracted= 2 number of extra gaps= 2 total=94880 # 1w66A.306.117 read from T0547.t06.many.frag # found chain 1w66A in training set Warning: unaligning (T0547)K311 (1w66A)G121 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1w66A)L122 because P (beta_P) conformation "forbidden" or filtered. T0547 306 :IAEQK 1w66A 116 :VCADL T0547 313 :LE 1w66A 123 :HA Number of specific fragments extracted= 2 number of extra gaps= 1 total=94882 # 1v33A.306.151 read from T0547.t06.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)K311 (1v33A)G137 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1v33A)D140 because D (zeta) conformation "forbidden" or filtered. T0547 306 :IAEQK 1v33A 132 :LREEL T0547 312 :DL 1v33A 138 :FN Number of specific fragments extracted= 2 number of extra gaps= 2 total=94884 # 2a2lA.306.26 read from T0547.t06.many.frag # found chain 2a2lA in template set Warning: unaligning (T0547)K311 (2a2lA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (2a2lA)V34 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (2a2lA)V37 T0547 306 :IAEQK 2a2lA 28 :KATEI T0547 313 :L 2a2lA 35 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=94886 # 1n81A.306.59 read from T0547.t06.many.frag # found chain 1n81A in template set Warning: unaligning (T0547)D312 (1n81A)Y86 because D (zeta) conformation "forbidden" or filtered. T0547 306 :IAEQKK 1n81A 80 :NQNRYN T0547 313 :LE 1n81A 87 :FL Number of specific fragments extracted= 2 number of extra gaps= 1 total=94888 # 1yvrA.306.485 read from T0547.t06.many.frag # found chain 1yvrA in template set Warning: unaligning (T0547)K311 (1yvrA)G491 because L (left) conformation "forbidden" or filtered. T0547 306 :IAEQK 1yvrA 486 :YREKM T0547 312 :DLE 1yvrA 492 :IPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=94890 # 1iirA.306.172 read from T0547.t06.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)K310 (1iirA)I177 because G (3-10) conformation "forbidden" or filtered. T0547 306 :IAEQ 1iirA 173 :HRDA T0547 311 :KDLE 1iirA 178 :GLPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=94892 # 1ejbA.306.111 read from T0547.t06.many.frag # found chain 1ejbA in template set Warning: unaligning (T0547)K311 (1ejbA)D117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1ejbA)M118 because Y (epsilon') conformation "forbidden" or filtered. T0547 306 :IAEQK 1ejbA 112 :LQEKV T0547 313 :LE 1ejbA 119 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=94894 # 1fp2A.307.327 read from T0547.t06.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)P315 (1fp2A)Y336 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKKDLE 1fp2A 328 :FIEAGFQH Number of specific fragments extracted= 1 number of extra gaps= 1 total=94895 # 1jg1A.307.133 read from T0547.t06.many.frag # found chain 1jg1A in training set T0547 307 :AEQKKDLEP 1jg1A 134 :LERAGVKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94896 # 1tca.307.90 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKK 1tca 91 :YAGSG T0547 313 :LE 1tca 97 :NK Number of specific fragments extracted= 2 number of extra gaps= 2 total=94898 # 1di2A.307.9 read from T0547.t06.many.frag # found chain 1di2A in template set T0547 307 :AEQKKDLEP 1di2A 121 :AVQKGWRLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=94899 # 2b61A.307.146 read from T0547.t06.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)K311 (2b61A)G132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2b61A)H135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2b61A)L136 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 2b61A 128 :LEHL T0547 312 :DL 2b61A 133 :IS Number of specific fragments extracted= 2 number of extra gaps= 2 total=94901 # 1y8aA.307.215 read from T0547.t06.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. T0547 307 :AEQK 1y8aA 194 :CESK T0547 312 :DLEP 1y8aA 199 :IDFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=94903 # 1kr7A.307.90 read from T0547.t06.many.frag # found chain 1kr7A in training set Warning: unaligning (T0547)K311 (1kr7A)G94 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1kr7A)L98 because G (3-10) conformation "forbidden" or filtered. T0547 307 :AEQK 1kr7A 90 :CSAH T0547 312 :DLE 1kr7A 95 :APD Number of specific fragments extracted= 2 number of extra gaps= 2 total=94905 # 1t13A.307.101 read from T0547.t06.many.frag # found chain 1t13A in template set Warning: unaligning (T0547)K311 (1t13A)E108 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1t13A)V109 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1t13A)V111 because D (zeta) conformation "forbidden" or filtered. T0547 307 :AEQK 1t13A 104 :QLET T0547 313 :L 1t13A 110 :P T0547 315 :P 1t13A 112 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=94908 # 1ukkA.307.65 read from T0547.t06.many.frag # found chain 1ukkA in training set Warning: unaligning (T0547)E314 (1ukkA)P73 because P (beta_P) conformation "forbidden" or filtered. T0547 307 :AEQKKDL 1ukkA 66 :LEREGFP T0547 315 :P 1ukkA 74 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=94910 # 1gwyA.307.20 read from T0547.t06.many.frag # found chain 1gwyA in training set Warning: unaligning (T0547)K311 (1gwyA)G25 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1gwyA)R29 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 1gwyA 21 :LEEL T0547 312 :DLE 1gwyA 26 :KVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=94912 # 1ylxA.307.23 read from T0547.t06.many.frag # found chain 1ylxA in training set Warning: unaligning (T0547)K311 (1ylxA)G25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1ylxA)Q28 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1ylxA)V29 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 1ylxA 21 :MEAY T0547 312 :DL 1ylxA 26 :LD Number of specific fragments extracted= 2 number of extra gaps= 2 total=94914 # 1lu4A.307.91 read from T0547.t06.many.frag # found chain 1lu4A in training set Warning: unaligning (T0547)A307 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1lu4A)A1093 Warning: unaligning (T0547)E308 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1lu4A)A1093 Warning: unaligning (T0547)K311 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1lu4A)V1097 Warning: unaligning (T0547)D312 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1lu4A)V1097 Warning: unaligning (T0547)L313 because of BadResidue code BAD_PEPTIDE at template residue (1lu4A)P1098 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE at template residue (1lu4A)W1099 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1lu4A)Q1100 T0547 309 :QK 1lu4A 1094 :RY Number of specific fragments extracted= 1 number of extra gaps= 2 total=94915 # 1k8qA.307.138 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)E314 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. T0547 307 :AEQKKDL 1k8qA 139 :LKKTGQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=94916 # 1fi4A.307.308 read from T0547.t06.many.frag # found chain 1fi4A in template set Warning: unaligning (T0547)P315 (1fi4A)V297 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKKDLE 1fi4A 289 :NQFYGETI Number of specific fragments extracted= 1 number of extra gaps= 1 total=94917 # 1iirA.307.173 read from T0547.t06.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)K310 (1iirA)I177 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1iirA)G178 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1iirA)L179 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQ 1iirA 174 :RDA T0547 313 :LEP 1iirA 180 :PPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=94919 # 2tpt.307.227 read from T0547.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0547)K311 (2tpt)G232 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (2tpt)V233 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2tpt)T236 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 2tpt 228 :ANGA T0547 313 :LE 2tpt 234 :RT Number of specific fragments extracted= 2 number of extra gaps= 2 total=94921 # 1v33A.307.152 read from T0547.t06.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)D312 (1v33A)F138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1v33A)D140 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1v33A)I141 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKK 1v33A 133 :REELG T0547 313 :L 1v33A 139 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=94923 # 1ejbA.307.112 read from T0547.t06.many.frag # found chain 1ejbA in template set Warning: unaligning (T0547)K311 (1ejbA)D117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1ejbA)M118 because Y (epsilon') conformation "forbidden" or filtered. T0547 307 :AEQK 1ejbA 113 :QEKV T0547 313 :LEP 1ejbA 119 :PVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=94925 # 1n81A.307.60 read from T0547.t06.many.frag # found chain 1n81A in template set Warning: unaligning (T0547)P315 (1n81A)I89 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKKDLE 1n81A 81 :QNRYNYFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=94926 # 1xpjA.307.72 read from T0547.t06.many.frag # found chain 1xpjA in template set Warning: unaligning (T0547)K311 (1xpjA)Q77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1xpjA)D81 because G (3-10) conformation "forbidden" or filtered. T0547 307 :AEQK 1xpjA 73 :LDKH T0547 312 :DLE 1xpjA 78 :VPY Number of specific fragments extracted= 2 number of extra gaps= 2 total=94928 # 1yvrA.307.486 read from T0547.t06.many.frag # found chain 1yvrA in template set Warning: unaligning (T0547)K311 (1yvrA)G491 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1yvrA)K495 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 1yvrA 487 :REKM T0547 312 :DLE 1yvrA 492 :IPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=94930 # 1n3lA.307.198 read from T0547.t06.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE in next template residue (1n3lA)V208 T0547 307 :AEQKKDLE 1n3lA 199 :LPALGYSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=94931 # 1xkpB.307.11 read from T0547.t06.many.frag # found chain 1xkpB in training set T0547 307 :AEQKKDLEP 1xkpB 12 :CQDLGVPTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=94932 # 1eexA.307.422 read from T0547.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0547)P315 (1eexA)I431 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQKKDLE 1eexA 423 :FAGMGLPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=94933 2bhvA expands to /projects/compbio/data/pdb/2bhv.pdb.gz 2bhvA:# 2bhvA.307.142 read from T0547.t06.many.frag # adding 2bhvA to template set # found chain 2bhvA in template set Warning: unaligning (T0547)K311 (2bhvA)G277 because T (delta_L) conformation "forbidden" or filtered. T0547 307 :AEQK 2bhvA 273 :FQRY T0547 312 :DLEP 2bhvA 278 :VPLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=94935 # 1zc6A.307.63 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)K311 (1zc6A)G68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1zc6A)A71 because P (beta_P) conformation "forbidden" or filtered. T0547 307 :AEQK 1zc6A 64 :FQQA T0547 312 :DL 1zc6A 69 :LP T0547 315 :P 1zc6A 72 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=94938 # 1f1eA.307.126 read from T0547.t06.many.frag # found chain 1f1eA in training set T0547 307 :AEQKKDLEP 1f1eA 127 :ADEDGRKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=94939 # 2bjvA.307.197 read from T0547.t06.many.frag # found chain 2bjvA in training set T0547 307 :AEQKKDLEP 2bjvA 198 :CREIKLPLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=94940 # 1uxoA.307.150 read from T0547.t06.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)K311 (1uxoA)D153 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1uxoA)Y157 because E (beta_S) conformation "forbidden" or filtered. T0547 307 :AEQK 1uxoA 149 :AQQI T0547 312 :DLE 1uxoA 154 :AAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=94942 # 1s4bP.307.305 read from T0547.t06.many.frag # found chain 1s4bP in template set Warning: unaligning (T0547)P315 (1s4bP)D329 because G (3-10) conformation "forbidden" or filtered. T0547 307 :AEQKKDLE 1s4bP 321 :CERRGLPF Number of specific fragments extracted= 1 number of extra gaps= 1 total=94943 # 1tca.308.91 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 1tca 92 :AGSGNNK T0547 316 :D 1tca 100 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=94945 # 1fp2A.308.328 read from T0547.t06.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)K310 (1fp2A)A331 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1fp2A)H335 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1fp2A)Y336 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1fp2A)K337 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQ 1fp2A 329 :IE T0547 311 :KDL 1fp2A 332 :GFQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=94947 # 1jg1A.308.134 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)K311 (1jg1A)G138 because T (delta_L) conformation "forbidden" or filtered. T0547 308 :EQK 1jg1A 135 :ERA T0547 312 :DLEPD 1jg1A 139 :VKNVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=94949 # 2b61A.308.147 read from T0547.t06.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)K311 (2b61A)G132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2b61A)H135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2b61A)L136 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQK 2b61A 129 :EHL T0547 312 :DL 2b61A 133 :IS T0547 316 :D 2b61A 137 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=94952 # 1t13A.308.102 read from T0547.t06.many.frag # found chain 1t13A in template set Warning: unaligning (T0547)K310 (1t13A)T107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1t13A)E108 because L (left) conformation "forbidden" or filtered. T0547 308 :EQ 1t13A 105 :LE T0547 312 :DLEPD 1t13A 109 :VPVLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=94954 # 2tpt.308.228 read from T0547.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0547)D312 (2tpt)V233 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2tpt)T236 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKK 2tpt 229 :NGAG T0547 313 :LE 2tpt 234 :RT T0547 316 :D 2tpt 237 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=94957 # 1di2A.308.10 read from T0547.t06.many.frag # found chain 1di2A in template set Warning: unaligning (T0547)K311 (1di2A)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 308 :EQK 1di2A 122 :VQK T0547 312 :DLEPD 1di2A 126 :WRLPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=94959 # 1k8qA.308.139 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)E314 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. T0547 308 :EQKKDL 1k8qA 140 :KKTGQD T0547 316 :D 1k8qA 148 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=94961 # 1v33A.308.153 read from T0547.t06.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)D312 (1v33A)F138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1v33A)I141 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKK 1v33A 134 :EELG T0547 313 :LE 1v33A 139 :ND T0547 316 :D 1v33A 142 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=94964 # 1fi4A.308.309 read from T0547.t06.many.frag # found chain 1fi4A in template set Warning: unaligning (T0547)K311 (1fi4A)G293 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1fi4A)V297 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQK 1fi4A 290 :QFY T0547 312 :DLE 1fi4A 294 :ETI T0547 316 :D 1fi4A 298 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=94967 # 1y8aA.308.216 read from T0547.t06.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)D312 (1y8aA)I199 because N (gamma') conformation "forbidden" or filtered. T0547 308 :EQKK 1y8aA 195 :ESKG T0547 313 :LEPD 1y8aA 200 :DFPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=94969 # 1ejbA.308.113 read from T0547.t06.many.frag # found chain 1ejbA in template set Warning: unaligning (T0547)K311 (1ejbA)D117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1ejbA)M118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1ejbA)V120 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1ejbA)F122 because N (gamma') conformation "forbidden" or filtered. T0547 308 :EQK 1ejbA 114 :EKV T0547 313 :L 1ejbA 119 :P T0547 315 :P 1ejbA 121 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=94972 # 1n3lA.308.199 read from T0547.t06.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)K311 (1n3lA)G203 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1n3lA)Y204 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE in next template residue (1n3lA)V208 Warning: unaligning (T0547)D316 because of BadResidue code BAD_PEPTIDE at template residue (1n3lA)V208 T0547 308 :EQK 1n3lA 200 :PAL T0547 313 :LE 1n3lA 205 :SK Number of specific fragments extracted= 2 number of extra gaps= 2 total=94974 # 1ylxA.308.24 read from T0547.t06.many.frag # found chain 1ylxA in training set Warning: unaligning (T0547)K311 (1ylxA)G25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1ylxA)V29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1ylxA)G30 because Y (epsilon') conformation "forbidden" or filtered. T0547 308 :EQK 1ylxA 22 :EAY T0547 312 :DLE 1ylxA 26 :LDQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=94976 # 1v7zA.308.138 read from T0547.t06.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)K311 (1v7zA)G142 because L (left) conformation "forbidden" or filtered. T0547 308 :EQK 1v7zA 139 :RYA T0547 312 :DLEPD 1v7zA 143 :IQDFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=94978 # 1gwyA.308.21 read from T0547.t06.many.frag # found chain 1gwyA in training set Warning: unaligning (T0547)P315 (1gwyA)R29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1gwyA)K30 because Y (epsilon') conformation "forbidden" or filtered. T0547 308 :EQKKDLE 1gwyA 22 :EELGKVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=94979 # 1yvrA.308.487 read from T0547.t06.many.frag # found chain 1yvrA in template set Warning: unaligning (T0547)P315 (1yvrA)K495 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 1yvrA 488 :EKMGIPA T0547 316 :D 1yvrA 496 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=94981 # 1uxoA.308.151 read from T0547.t06.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)D312 (1uxoA)A154 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1uxoA)Y157 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKK 1uxoA 150 :QQID T0547 313 :LE 1uxoA 155 :AL T0547 316 :D 1uxoA 158 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=94984 # 1kr7A.308.91 read from T0547.t06.many.frag # found chain 1kr7A in training set Warning: unaligning (T0547)P315 (1kr7A)L98 because G (3-10) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 1kr7A 91 :SAHGAPD T0547 316 :D 1kr7A 99 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=94986 # 1iirA.308.174 read from T0547.t06.many.frag # found chain 1iirA in training set Warning: unaligning (T0547)K311 (1iirA)G178 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1iirA)L179 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQK 1iirA 175 :DAI T0547 313 :LEPD 1iirA 180 :PPVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=94988 # 1lu4A.308.92 read from T0547.t06.many.frag # found chain 1lu4A in training set Warning: unaligning (T0547)E308 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1lu4A)A1093 Warning: unaligning (T0547)K311 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1lu4A)V1097 Warning: unaligning (T0547)D312 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1lu4A)V1097 Warning: unaligning (T0547)L313 because of BadResidue code BAD_PEPTIDE at template residue (1lu4A)P1098 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE at template residue (1lu4A)W1099 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1lu4A)Q1100 Warning: unaligning (T0547)D316 (1lu4A)P1101 because C (cis) conformation "forbidden" or filtered. T0547 309 :QK 1lu4A 1094 :RY Number of specific fragments extracted= 1 number of extra gaps= 2 total=94989 # 1yqeA.308.262 read from T0547.t06.many.frag # found chain 1yqeA in template set Warning: unaligning (T0547)K311 (1yqeA)G262 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1yqeA)L266 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1yqeA)K267 because P (beta_P) conformation "forbidden" or filtered. T0547 308 :EQK 1yqeA 259 :EVA T0547 312 :DLE 1yqeA 263 :VEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=94991 # 1ysrA.308.59 read from T0547.t06.many.frag # found chain 1ysrA in training set Warning: unaligning (T0547)P315 (1ysrA)V363 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 1ysrA 356 :KHGGATL T0547 316 :D 1ysrA 364 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=94993 # 2c5aA.308.191 read from T0547.t06.many.frag # found chain 2c5aA in training set Warning: unaligning (T0547)P315 (2c5aA)R197 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 2c5aA 190 :KDFGIEC T0547 316 :D 2c5aA 198 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=94995 # 1ukkA.308.66 read from T0547.t06.many.frag # found chain 1ukkA in training set T0547 308 :EQKKDLEPD 1ukkA 67 :EREGFPPKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=94996 # 1t3tA.308.773 read from T0547.t06.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)K311 (1t3tA)G769 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1t3tA)L770 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1t3tA)V774 because Y (epsilon') conformation "forbidden" or filtered. T0547 308 :EQK 1t3tA 766 :PQL T0547 313 :LEP 1t3tA 771 :TIP Number of specific fragments extracted= 2 number of extra gaps= 2 total=94998 # 1dfmA.308.155 read from T0547.t06.many.frag # found chain 1dfmA in training set Warning: unaligning (T0547)K311 (1dfmA)N159 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1dfmA)P164 because P (beta_P) conformation "forbidden" or filtered. T0547 308 :EQK 1dfmA 156 :AEY T0547 312 :DLEP 1dfmA 160 :VFDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=95000 # 1u14A.308.64 read from T0547.t06.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)P315 (1u14A)F71 because E (beta_S) conformation "forbidden" or filtered. T0547 308 :EQKKDLE 1u14A 64 :RLHPQAD T0547 316 :D 1u14A 72 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=95002 # 1f1eA.308.127 read from T0547.t06.many.frag # found chain 1f1eA in training set Warning: unaligning (T0547)K310 (1f1eA)D130 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1f1eA)G131 because L (left) conformation "forbidden" or filtered. T0547 308 :EQ 1f1eA 128 :DE T0547 312 :DLEPD 1f1eA 132 :RKTVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=95004 # 2yhx.308.377 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)K311 (2yhx)G382 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2yhx)G386 because Y (epsilon') conformation "forbidden" or filtered. T0547 308 :EQK 2yhx 379 :QKK T0547 312 :DLE 2yhx 383 :YSS T0547 316 :D 2yhx 387 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=95007 # 2b61A.309.148 read from T0547.t06.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)K311 (2b61A)G132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2b61A)H135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2b61A)L136 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 2b61A 130 :HL T0547 312 :DL 2b61A 133 :IS T0547 316 :DI 2b61A 137 :KA Number of specific fragments extracted= 3 number of extra gaps= 2 total=95010 # 1tca.309.92 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKKDLE 1tca 93 :GSGNNK T0547 316 :DI 1tca 100 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95012 # 1di2A.309.11 read from T0547.t06.many.frag # found chain 1di2A in template set Warning: unaligning (T0547)K311 (1di2A)G125 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1di2A)W126 because P (beta_P) conformation "forbidden" or filtered. T0547 309 :QK 1di2A 123 :QK T0547 313 :LEPDI 1di2A 127 :RLPEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=95014 # 1k8qA.309.140 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)K311 (1k8qA)G143 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1k8qA)Q144 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. T0547 309 :QK 1k8qA 141 :KT T0547 313 :L 1k8qA 145 :D T0547 316 :DI 1k8qA 148 :HY Number of specific fragments extracted= 3 number of extra gaps= 2 total=95017 # 1fp2A.309.329 read from T0547.t06.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)P315 (1fp2A)Y336 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKKDLE 1fp2A 330 :EAGFQH T0547 316 :DI 1fp2A 337 :KI Number of specific fragments extracted= 2 number of extra gaps= 1 total=95019 # 1jg1A.309.135 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)K311 (1jg1A)G138 because T (delta_L) conformation "forbidden" or filtered. T0547 309 :QK 1jg1A 136 :RA T0547 312 :DLEPDI 1jg1A 139 :VKNVHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95021 # 2tpt.309.229 read from T0547.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0547)K311 (2tpt)G232 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2tpt)T236 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 2tpt 230 :GA T0547 312 :DLE 2tpt 233 :VRT T0547 316 :DI 2tpt 237 :AL Number of specific fragments extracted= 3 number of extra gaps= 2 total=95024 # 1v33A.309.154 read from T0547.t06.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)K310 (1v33A)L136 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1v33A)G137 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1v33A)I141 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1v33A)H142 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :Q 1v33A 135 :E T0547 312 :DLE 1v33A 138 :FND T0547 317 :I 1v33A 143 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=95027 # 1t13A.309.103 read from T0547.t06.many.frag # found chain 1t13A in template set Warning: unaligning (T0547)K311 (1t13A)E108 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1t13A)V111 because D (zeta) conformation "forbidden" or filtered. T0547 309 :QK 1t13A 106 :ET T0547 312 :DL 1t13A 109 :VP T0547 315 :PDI 1t13A 112 :LSV Number of specific fragments extracted= 3 number of extra gaps= 2 total=95030 # 1fi4A.309.310 read from T0547.t06.many.frag # found chain 1fi4A in template set Warning: unaligning (T0547)K311 (1fi4A)G293 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1fi4A)V297 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1fi4A 291 :FY T0547 312 :DLE 1fi4A 294 :ETI T0547 316 :DI 1fi4A 298 :AY Number of specific fragments extracted= 3 number of extra gaps= 2 total=95033 # 1y8aA.309.217 read from T0547.t06.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. T0547 309 :QK 1y8aA 196 :SK T0547 312 :DLEPDI 1y8aA 199 :IDFPVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95035 # 1v7zA.309.139 read from T0547.t06.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)K311 (1v7zA)G142 because L (left) conformation "forbidden" or filtered. T0547 309 :QK 1v7zA 140 :YA T0547 312 :DLEPDI 1v7zA 143 :IQDFKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95037 # 1n3lA.309.200 read from T0547.t06.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE in next template residue (1n3lA)V208 Warning: unaligning (T0547)D316 because of BadResidue code BAD_PEPTIDE at template residue (1n3lA)V208 T0547 309 :QKKDLE 1n3lA 201 :ALGYSK T0547 317 :I 1n3lA 209 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=95039 # 1yvrA.309.488 read from T0547.t06.many.frag # found chain 1yvrA in template set Warning: unaligning (T0547)D312 (1yvrA)I492 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1yvrA)K495 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKK 1yvrA 489 :KMG T0547 313 :LE 1yvrA 493 :PA T0547 316 :DI 1yvrA 496 :LI Number of specific fragments extracted= 3 number of extra gaps= 2 total=95042 # 1ejbA.309.114 read from T0547.t06.many.frag # found chain 1ejbA in template set Warning: unaligning (T0547)K311 (1ejbA)D117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1ejbA)M118 because Y (epsilon') conformation "forbidden" or filtered. T0547 309 :QK 1ejbA 115 :KV T0547 313 :LEPDI 1ejbA 119 :PVIFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95044 # 1vkmA.309.215 read from T0547.t06.many.frag # found chain 1vkmA in template set Warning: unaligning (T0547)K311 (1vkmA)E206 because L (left) conformation "forbidden" or filtered. T0547 309 :QK 1vkmA 204 :EM T0547 312 :DLEPDI 1vkmA 207 :LEKTLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=95046 # 2yhx.309.378 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)K311 (2yhx)G382 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2yhx)S385 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2yhx)G386 because Y (epsilon') conformation "forbidden" or filtered. T0547 309 :QK 2yhx 380 :KK T0547 312 :DL 2yhx 383 :YS T0547 316 :DI 2yhx 387 :HI Number of specific fragments extracted= 3 number of extra gaps= 2 total=95049 # 1ysrA.309.60 read from T0547.t06.many.frag # found chain 1ysrA in training set Warning: unaligning (T0547)K311 (1ysrA)G359 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1ysrA)L362 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1ysrA)V363 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1ysrA 357 :HG T0547 312 :DL 1ysrA 360 :AT T0547 316 :DI 1ysrA 364 :QL Number of specific fragments extracted= 3 number of extra gaps= 2 total=95052 # 1ylxA.309.25 read from T0547.t06.many.frag # found chain 1ylxA in training set Warning: unaligning (T0547)K311 (1ylxA)G25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1ylxA)V29 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1ylxA 23 :AY T0547 312 :DLE 1ylxA 26 :LDQ T0547 316 :DI 1ylxA 30 :GI Number of specific fragments extracted= 3 number of extra gaps= 2 total=95055 # 1dfmA.309.156 read from T0547.t06.many.frag # found chain 1dfmA in training set Warning: unaligning (T0547)K311 (1dfmA)N159 because L (left) conformation "forbidden" or filtered. T0547 309 :QK 1dfmA 157 :EY T0547 312 :DLEPDI 1dfmA 160 :VFDVPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=95057 # 1uxoA.309.152 read from T0547.t06.many.frag # found chain 1uxoA in training set Warning: unaligning (T0547)K311 (1uxoA)D153 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1uxoA)L156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1uxoA)Y157 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1uxoA 151 :QI T0547 312 :DL 1uxoA 154 :AA T0547 316 :DI 1uxoA 158 :EV Number of specific fragments extracted= 3 number of extra gaps= 2 total=95060 # 1hjrA.309.92 read from T0547.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0547)K311 (1hjrA)E95 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1hjrA)F99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1hjrA)E100 because P (beta_P) conformation "forbidden" or filtered. T0547 309 :QK 1hjrA 93 :NQ T0547 312 :DLE 1hjrA 96 :LPV T0547 317 :I 1hjrA 101 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=95063 # 1t3tA.309.774 read from T0547.t06.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)D312 (1t3tA)L770 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1t3tA)V774 because Y (epsilon') conformation "forbidden" or filtered. T0547 309 :QKK 1t3tA 767 :QLG T0547 313 :LEP 1t3tA 771 :TIP T0547 317 :I 1t3tA 775 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=95066 # 1nnlA.309.167 read from T0547.t06.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)K311 (1nnlA)H170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1nnlA)K173 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1nnlA)I174 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QK 1nnlA 168 :KF T0547 312 :DL 1nnlA 171 :FK T0547 316 :DI 1nnlA 175 :IM Number of specific fragments extracted= 3 number of extra gaps= 2 total=95069 # 1gwyA.309.22 read from T0547.t06.many.frag # found chain 1gwyA in training set Warning: unaligning (T0547)P315 (1gwyA)R29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1gwyA)K30 because Y (epsilon') conformation "forbidden" or filtered. T0547 309 :QKKDLE 1gwyA 23 :ELGKVS T0547 317 :I 1gwyA 31 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=95071 # 1tjyA.309.209 read from T0547.t06.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)E314 (1tjyA)N239 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tjyA)L240 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKKDL 1tjyA 234 :NLKRN T0547 316 :DI 1tjyA 241 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=95073 # 1qsgA.309.178 read from T0547.t06.many.frag # found chain 1qsgA in training set Warning: unaligning (T0547)E314 (1qsgA)G181 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1qsgA)V182 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1qsgA)R183 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKKDL 1qsgA 176 :AMGPE T0547 317 :I 1qsgA 184 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=95075 # 2c5aA.309.192 read from T0547.t06.many.frag # found chain 2c5aA in training set Warning: unaligning (T0547)P315 (2c5aA)R197 because E (beta_S) conformation "forbidden" or filtered. T0547 309 :QKKDLE 2c5aA 191 :DFGIEC T0547 316 :DI 2c5aA 198 :IG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95077 # 1yqeA.309.263 read from T0547.t06.many.frag # found chain 1yqeA in template set Warning: unaligning (T0547)E314 (1yqeA)V265 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1yqeA)L266 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1yqeA)K267 because P (beta_P) conformation "forbidden" or filtered. T0547 309 :QKKDL 1yqeA 260 :VAGVE T0547 317 :I 1yqeA 268 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=95079 # 1nw3A.309.207 read from T0547.t06.many.frag # found chain 1nw3A in template set Warning: unaligning (T0547)K311 (1nw3A)G210 because L (left) conformation "forbidden" or filtered. T0547 309 :QK 1nw3A 208 :WY T0547 312 :DLEPDI 1nw3A 211 :KKHAEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=95081 # 1tca.310.93 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)K311 (1tca)G95 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1tca)K98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1tca)P100 because P (beta_P) conformation "forbidden" or filtered. T0547 310 :K 1tca 94 :S T0547 313 :L 1tca 97 :N T0547 317 :IF 1tca 101 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=95084 # 2b61A.310.149 read from T0547.t06.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)K311 (2b61A)G132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2b61A)H135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2b61A)L136 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I317 (2b61A)A138 because Y (epsilon') conformation "forbidden" or filtered. T0547 310 :K 2b61A 131 :L T0547 312 :DL 2b61A 133 :IS T0547 316 :D 2b61A 137 :K T0547 318 :F 2b61A 139 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=95088 # 1k8qA.310.141 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)K311 (1k8qA)G143 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. T0547 310 :K 1k8qA 142 :T T0547 312 :DLE 1k8qA 144 :QDK T0547 316 :DIF 1k8qA 148 :HYV Number of specific fragments extracted= 3 number of extra gaps= 2 total=95091 # 1v33A.310.155 read from T0547.t06.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)K311 (1v33A)G137 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1v33A)I141 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1v33A 136 :L T0547 312 :DLE 1v33A 138 :FND T0547 316 :DIF 1v33A 142 :HII Number of specific fragments extracted= 3 number of extra gaps= 2 total=95094 # 2yhx.310.379 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)D312 (2yhx)Y383 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2yhx)G386 because Y (epsilon') conformation "forbidden" or filtered. T0547 310 :KK 2yhx 381 :KG T0547 313 :LE 2yhx 384 :SS T0547 316 :DIF 2yhx 387 :HIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=95097 # 1nnlA.310.168 read from T0547.t06.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)K311 (1nnlA)H170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1nnlA)F171 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1nnlA)I174 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1nnlA)I175 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1nnlA 169 :F T0547 313 :LE 1nnlA 172 :KK T0547 317 :IF 1nnlA 176 :MI Number of specific fragments extracted= 3 number of extra gaps= 2 total=95100 # 1v7zA.310.140 read from T0547.t06.many.frag # found chain 1v7zA in training set Warning: unaligning (T0547)K311 (1v7zA)G142 because L (left) conformation "forbidden" or filtered. T0547 310 :K 1v7zA 141 :A T0547 312 :DLEPDIF 1v7zA 143 :IQDFKVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95102 # 1jg1A.310.136 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)D312 (1jg1A)V139 because P (beta_P) conformation "forbidden" or filtered. T0547 310 :KK 1jg1A 137 :AG T0547 313 :LEPDIF 1jg1A 140 :KNVHVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=95104 # 1y8aA.310.218 read from T0547.t06.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. T0547 310 :K 1y8aA 197 :K T0547 312 :DLEPDIF 1y8aA 199 :IDFPVVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95106 # 1fi4A.310.311 read from T0547.t06.many.frag # found chain 1fi4A in template set Warning: unaligning (T0547)P315 (1fi4A)V297 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1fi4A)A298 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDLE 1fi4A 292 :YGETI T0547 317 :IF 1fi4A 299 :YT Number of specific fragments extracted= 2 number of extra gaps= 1 total=95108 # 1t13A.310.104 read from T0547.t06.many.frag # found chain 1t13A in template set Warning: unaligning (T0547)K311 (1t13A)E108 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I317 (1t13A)V114 because G (3-10) conformation "forbidden" or filtered. T0547 310 :K 1t13A 107 :T T0547 312 :DLEPD 1t13A 109 :VPVLS T0547 318 :F 1t13A 115 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=95111 # 1di2A.310.12 read from T0547.t06.many.frag # found chain 1di2A in template set Warning: unaligning (T0547)E314 (1di2A)L128 because P (beta_P) conformation "forbidden" or filtered. T0547 310 :KKDL 1di2A 124 :KGWR T0547 315 :PDIF 1di2A 129 :PEYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=95113 # 2tpt.310.230 read from T0547.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0547)K311 (2tpt)G232 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2tpt)T236 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 2tpt 231 :A T0547 312 :DLE 2tpt 233 :VRT T0547 316 :DIF 2tpt 237 :ALL Number of specific fragments extracted= 3 number of extra gaps= 2 total=95116 # 1qtnA.310.94 read from T0547.t06.many.frag # found chain 1qtnA in template set Warning: unaligning (T0547)D312 (1qtnA)M307 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1qtnA)F310 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KK 1qtnA 305 :SN T0547 313 :LE 1qtnA 308 :DC T0547 316 :DIF 1qtnA 311 :ICC Number of specific fragments extracted= 3 number of extra gaps= 2 total=95119 # 1vkmA.310.216 read from T0547.t06.many.frag # found chain 1vkmA in template set Warning: unaligning (T0547)K310 (1vkmA)M205 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K311 (1vkmA)E206 because L (left) conformation "forbidden" or filtered. T0547 312 :DLEPDIF 1vkmA 207 :LEKTLMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=95120 # 1u14A.310.66 read from T0547.t06.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)P315 (1u14A)F71 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDLE 1u14A 66 :HPQAD T0547 316 :DIF 1u14A 72 :WVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95122 # 1to6A.310.180 read from T0547.t06.many.frag # found chain 1to6A in template set Warning: unaligning (T0547)P315 (1to6A)I186 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDLE 1to6A 181 :PEDVH T0547 316 :DIF 1to6A 187 :RIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95124 # 1qgoA.310.189 read from T0547.t06.many.frag # found chain 1qgoA in template set Warning: unaligning (T0547)E314 (1qgoA)G194 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1qgoA)V195 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDL 1qgoA 190 :EGVT T0547 316 :DIF 1qgoA 196 :HLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=95126 # 1ysrA.310.61 read from T0547.t06.many.frag # found chain 1ysrA in training set Warning: unaligning (T0547)K311 (1ysrA)G359 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1ysrA)V363 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1ysrA 358 :G T0547 312 :DLE 1ysrA 360 :ATL T0547 316 :DIF 1ysrA 364 :QLS Number of specific fragments extracted= 3 number of extra gaps= 2 total=95129 # 1l8aA.310.680 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)K311 (1l8aA)Q682 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1l8aA)Y686 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1l8aA)Y687 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1l8aA 681 :K T0547 312 :DLE 1l8aA 683 :ENV T0547 317 :IF 1l8aA 688 :YI Number of specific fragments extracted= 3 number of extra gaps= 2 total=95132 # 1fp2A.310.330 read from T0547.t06.many.frag # found chain 1fp2A in training set Warning: unaligning (T0547)E314 (1fp2A)H335 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1fp2A)Y336 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDL 1fp2A 331 :AGFQ T0547 316 :DIF 1fp2A 337 :KIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=95134 # 2bz1A.310.139 read from T0547.t06.many.frag # found chain 2bz1A in training set Warning: unaligning (T0547)P315 (2bz1A)V145 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDLE 2bz1A 140 :LGVNE T0547 316 :DIF 2bz1A 146 :RLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95136 1wc3A expands to /projects/compbio/data/pdb/1wc3.pdb.gz 1wc3A:# 1wc3A.310.125 read from T0547.t06.many.frag # adding 1wc3A to template set # found chain 1wc3A in template set Warning: unaligning (T0547)K311 (1wc3A)E1110 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1wc3A)R1115 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1wc3A 1109 :N T0547 312 :DLEP 1wc3A 1111 :VPPV T0547 317 :IF 1wc3A 1116 :FR Number of specific fragments extracted= 3 number of extra gaps= 2 total=95139 # 1yvrA.310.489 read from T0547.t06.many.frag # found chain 1yvrA in template set Warning: unaligning (T0547)E314 (1yvrA)A494 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1yvrA)K495 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDL 1yvrA 490 :MGIP T0547 316 :DIF 1yvrA 496 :LIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95141 # 1n3lA.310.201 read from T0547.t06.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE in next template residue (1n3lA)V208 Warning: unaligning (T0547)D316 because of BadResidue code BAD_PEPTIDE at template residue (1n3lA)V208 T0547 310 :KKDLE 1n3lA 202 :LGYSK T0547 317 :IF 1n3lA 209 :HL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95143 # 1tjyA.310.210 read from T0547.t06.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)P315 (1tjyA)L240 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDLE 1tjyA 235 :LKRNN T0547 316 :DIF 1tjyA 241 :AIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95145 # 2plc.310.246 read from T0547.t06.many.frag # found chain 2plc in template set Warning: unaligning (T0547)K310 (2plc)E267 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (2plc)G271 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2plc)L272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (2plc)G273 because S (epsilon) conformation "forbidden" or filtered. T0547 311 :KDL 2plc 268 :KVR T0547 317 :IF 2plc 274 :IL Number of specific fragments extracted= 2 number of extra gaps= 2 total=95147 # 1dfmA.310.157 read from T0547.t06.many.frag # found chain 1dfmA in training set T0547 310 :KKDLEPDIF 1dfmA 158 :YNVFDVPIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=95148 # 1wdpA.310.284 read from T0547.t06.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)P315 (1wdpA)V290 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1wdpA)K291 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :KKDLE 1wdpA 285 :FLGCK T0547 317 :IF 1wdpA 292 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95150 # 1hjrA.310.93 read from T0547.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0547)K311 (1hjrA)E95 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1hjrA)F99 because E (beta_S) conformation "forbidden" or filtered. T0547 310 :K 1hjrA 94 :Q T0547 312 :DLE 1hjrA 96 :LPV T0547 316 :DIF 1hjrA 100 :EYA Number of specific fragments extracted= 3 number of extra gaps= 2 total=95153 # 1tca.311.94 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)K311 (1tca)G95 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1tca)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1tca 97 :NK T0547 316 :DIFI 1tca 100 :PVLT Number of specific fragments extracted= 2 number of extra gaps= 2 total=95155 # 1k8qA.311.142 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)K311 (1k8qA)G143 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1k8qA)H148 because P (beta_P) conformation "forbidden" or filtered. T0547 312 :DL 1k8qA 144 :QD T0547 317 :IFI 1k8qA 149 :YVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=95157 # 1nnlA.311.169 read from T0547.t06.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)K311 (1nnlA)H170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1nnlA)I174 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1nnlA 171 :FKK T0547 316 :DIFI 1nnlA 175 :IMIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=95159 # 2b61A.311.150 read from T0547.t06.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)D312 (2b61A)I133 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2b61A)L136 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :K 2b61A 132 :G T0547 313 :LE 2b61A 134 :SH T0547 316 :DIFI 2b61A 137 :KAII Number of specific fragments extracted= 3 number of extra gaps= 2 total=95162 # 1to6A.311.181 read from T0547.t06.many.frag # found chain 1to6A in template set Warning: unaligning (T0547)P315 (1to6A)I186 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1to6A)R187 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 1to6A 182 :EDVH T0547 317 :IFI 1to6A 188 :ILA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95164 # 1zedA.311.301 read from T0547.t06.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)K311 (1zedA)N302 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1zedA)G305 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1zedA)F306 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DL 1zedA 303 :PR T0547 316 :DIFI 1zedA 307 :FLFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=95166 # 1i60A.311.132 read from T0547.t06.many.frag # found chain 1i60A in training set T0547 311 :KDLEPDIFI 1i60A 133 :EPYGVKIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=95167 # 1v33A.311.156 read from T0547.t06.many.frag # found chain 1v33A in training set Warning: unaligning (T0547)P315 (1v33A)I141 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 1v33A 137 :GFND T0547 316 :DIFI 1v33A 142 :HIIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=95169 # 2yhx.311.380 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)K311 (2yhx)G382 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2yhx)G386 because Y (epsilon') conformation "forbidden" or filtered. T0547 312 :DLE 2yhx 383 :YSS T0547 316 :DIFI 2yhx 387 :HIAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=95171 # 7odcA.311.264 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 311 :KDLEPDIFI 7odcA 265 :SDSGVRIIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=95172 # 1qj4A.311.69 read from T0547.t06.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)P315 (1qj4A)V74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1qj4A)I75 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 1qj4A 70 :PGEK T0547 317 :IFI 1qj4A 76 :LVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95174 # 1vkmA.311.217 read from T0547.t06.many.frag # found chain 1vkmA in template set Warning: unaligning (T0547)K311 (1vkmA)E206 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1vkmA)L207 because N (gamma') conformation "forbidden" or filtered. T0547 313 :LEPDIFI 1vkmA 208 :EKTLMVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=95175 # 1twdA.311.166 read from T0547.t06.many.frag # found chain 1twdA in training set T0547 311 :KDLEPDIFI 1twdA 167 :HRDAPIIMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=95176 # 1k87A.311.423 read from T0547.t06.many.frag # found chain 1k87A in template set Warning: unaligning (T0547)D312 (1k87A)R425 because L (left) conformation "forbidden" or filtered. T0547 311 :K 1k87A 424 :S T0547 313 :LEPDIFI 1k87A 426 :RRLMIRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95178 # 1pjhA.311.109 read from T0547.t06.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)E314 (1pjhA)K113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1pjhA)L115 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDL 1pjhA 110 :KHS T0547 315 :P 1pjhA 114 :V T0547 317 :IFI 1pjhA 116 :ICC Number of specific fragments extracted= 3 number of extra gaps= 2 total=95181 # 1u14A.311.67 read from T0547.t06.many.frag # found chain 1u14A in training set Warning: unaligning (T0547)P315 (1u14A)F71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1u14A)W72 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 1u14A 67 :PQAD T0547 317 :IFI 1u14A 73 :VAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=95183 # 1ks9A.311.87 read from T0547.t06.many.frag # found chain 1ks9A in training set T0547 311 :KDLEPDIFI 1ks9A 88 :PVTTPILLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=95184 # 1qtnA.311.95 read from T0547.t06.many.frag # found chain 1qtnA in template set Warning: unaligning (T0547)P315 (1qtnA)F310 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :KDLE 1qtnA 306 :NMDC T0547 316 :DIFI 1qtnA 311 :ICCI Number of specific fragments extracted= 2 number of extra gaps= 1 total=95186 # 1l8aA.311.681 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)K311 (1l8aA)Q682 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (1l8aA)E683 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1l8aA)V685 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1l8aA)Y686 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :L 1l8aA 684 :N T0547 316 :DIFI 1l8aA 687 :YYIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=95188 # 1fiqB.311.52 read from T0547.t06.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)E314 (1fiqB)F275 because D (zeta) conformation "forbidden" or filtered. T0547 311 :KDL 1fiqB 272 :NQL T0547 315 :PDIFI 1fiqB 276 :PMIIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=95190 # 1bli.311.251 read from T0547.t06.many.frag # found chain 1bli in template set Warning: unaligning (T0547)D312 (1bli)G253 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1bli)M256 because L (left) conformation "forbidden" or filtered. T0547 311 :K 1bli 252 :T T0547 313 :LE 1bli 254 :KE T0547 316 :DIFI 1bli 257 :FTVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=95193 # 2tpt.311.231 read from T0547.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0547)K311 (2tpt)G232 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D312 (2tpt)V233 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (2tpt)T236 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 2tpt 234 :RT T0547 316 :DIFI 2tpt 237 :ALLT Number of specific fragments extracted= 2 number of extra gaps= 2 total=95195 # 2b4aA.311.85 read from T0547.t06.many.frag # found chain 2b4aA in template set Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE in next template residue (2b4aA)S78 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (2b4aA)S78 T0547 311 :KDL 2b4aA 74 :TKQ T0547 316 :DIFI 2b4aA 79 :VLIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95197 # 1yvrA.311.490 read from T0547.t06.many.frag # found chain 1yvrA in template set Warning: unaligning (T0547)K311 (1yvrA)G491 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1yvrA)A494 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1yvrA)K495 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DL 1yvrA 492 :IP T0547 316 :DIFI 1yvrA 496 :LIVC Number of specific fragments extracted= 2 number of extra gaps= 2 total=95199 # 1bupA.311.189 read from T0547.t06.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)K311 (1bupA)G190 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1bupA)N194 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1bupA 191 :AER T0547 316 :DIFI 1bupA 195 :VLIF Number of specific fragments extracted= 2 number of extra gaps= 2 total=95201 # 1zpdA.311.377 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)D312 (1zpdA)T379 because E (beta_S) conformation "forbidden" or filtered. T0547 311 :K 1zpdA 378 :L T0547 313 :LEPDIFI 1zpdA 380 :PNTTVIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95203 # 1ei9A.311.102 read from T0547.t06.many.frag # found chain 1ei9A in template set Warning: unaligning (T0547)D312 (1ei9A)P131 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1ei9A)M133 because P (beta_P) conformation "forbidden" or filtered. T0547 311 :K 1ei9A 130 :S T0547 313 :L 1ei9A 132 :P T0547 315 :PDIFI 1ei9A 134 :VNLIS Number of specific fragments extracted= 3 number of extra gaps= 2 total=95206 # 1y8aA.311.219 read from T0547.t06.many.frag # found chain 1y8aA in training set Warning: unaligning (T0547)K311 (1y8aA)G198 because L (left) conformation "forbidden" or filtered. T0547 312 :DLEPDIFI 1y8aA 199 :IDFPVVVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=95207 # 1bc5A.311.97 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)L313 (1bc5A)G115 because S (epsilon) conformation "forbidden" or filtered. T0547 311 :KD 1bc5A 113 :RH T0547 314 :EPDIFI 1bc5A 116 :EYRVWS Number of specific fragments extracted= 2 number of extra gaps= 1 total=95209 # 1x9iA.311.177 read from T0547.t06.many.frag # found chain 1x9iA in training set Warning: unaligning (T0547)E314 (1x9iA)R181 because L (left) conformation "forbidden" or filtered. T0547 311 :KDL 1x9iA 178 :FQK T0547 315 :PDIFI 1x9iA 182 :PTIIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95211 # 1tca.312.95 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)E314 (1tca)K98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DL 1tca 96 :NN T0547 316 :DIFIE 1tca 100 :PVLTW Number of specific fragments extracted= 2 number of extra gaps= 1 total=95213 # 7odcA.312.265 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E314 (7odcA)G268 because T (delta_L) conformation "forbidden" or filtered. T0547 312 :DL 7odcA 266 :DS T0547 315 :PDIFIE 7odcA 269 :VRIIAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=95215 # 1k8qA.312.143 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)E314 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1k8qA)H152 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DL 1k8qA 144 :QD T0547 316 :DIFI 1k8qA 148 :HYVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=95217 # 1x9iA.312.178 read from T0547.t06.many.frag # found chain 1x9iA in training set T0547 312 :DLEPDIFIE 1x9iA 179 :QKRPTIIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=95218 # 1i60A.312.133 read from T0547.t06.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)D316 (1i60A)K138 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLEP 1i60A 134 :PYGV T0547 317 :IFIE 1i60A 139 :IALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=95220 # 1bli.312.252 read from T0547.t06.many.frag # found chain 1bli in template set Warning: unaligning (T0547)P315 (1bli)M256 because L (left) conformation "forbidden" or filtered. T0547 312 :DLE 1bli 253 :GKE T0547 316 :DIFIE 1bli 257 :FTVAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=95222 # 1to6A.312.182 read from T0547.t06.many.frag # found chain 1to6A in template set Warning: unaligning (T0547)P315 (1to6A)I186 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1to6A 183 :DVH T0547 316 :DIFIE 1to6A 187 :RILAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=95224 # 1nnlA.312.170 read from T0547.t06.many.frag # found chain 1nnlA in training set Warning: unaligning (T0547)P315 (1nnlA)I174 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1nnlA 171 :FKK T0547 316 :DIFIE 1nnlA 175 :IMIGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=95226 # 1zedA.312.302 read from T0547.t06.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)P315 (1zedA)F306 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1zedA)F307 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1zedA 303 :PRG T0547 317 :IFIE 1zedA 308 :LFVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=95228 # 2bhuA.312.299 read from T0547.t06.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)D312 (2bhuA)G300 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L313 (2bhuA)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 314 :EPDIFIE 2bhuA 302 :THLLLAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=95229 # 1iuqA.312.220 read from T0547.t06.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)L313 (1iuqA)G223 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1iuqA)S224 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1iuqA)L226 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :D 1iuqA 222 :G T0547 315 :P 1iuqA 225 :Q T0547 317 :IFIE 1iuqA 227 :IWIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=95232 # 1knwA.312.259 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)D312 (1knwA)G260 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L313 (1knwA)H261 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1knwA)V263 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1knwA)K264 because P (beta_P) conformation "forbidden" or filtered. T0547 314 :E 1knwA 262 :P T0547 317 :IFIE 1knwA 265 :LEIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=95234 # 2b61A.312.151 read from T0547.t06.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)P315 (2b61A)L136 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 2b61A 133 :ISH T0547 316 :DIFIE 2b61A 137 :KAIIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95236 # 1twdA.312.167 read from T0547.t06.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)D312 (1twdA)R168 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1twdA)G176 because Y (epsilon') conformation "forbidden" or filtered. T0547 313 :LEPDIFI 1twdA 169 :DAPIIMA Number of specific fragments extracted= 1 number of extra gaps= 2 total=95237 # 1qj4A.312.70 read from T0547.t06.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)D312 (1qj4A)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1qj4A)V74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1qj4A)E79 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :LE 1qj4A 72 :EK T0547 316 :DIFI 1qj4A 75 :ILVG Number of specific fragments extracted= 2 number of extra gaps= 3 total=95239 # 1jftA.312.235 read from T0547.t06.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)E320 (1jftA)C245 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLEPDIFI 1jftA 237 :PHRPTAVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=95240 # 2yhx.312.381 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)P315 (2yhx)G386 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X391 T0547 312 :DLE 2yhx 383 :YSS T0547 316 :DIFI 2yhx 387 :HIAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=95242 # 1tjyA.312.186 read from T0547.t06.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)P315 (1tjyA)L214 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLE 1tjyA 211 :YPD T0547 316 :DIFIE 1tjyA 215 :DAIIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95244 # 1j79A.312.167 read from T0547.t06.many.frag # found chain 1j79A in training set Warning: unaligning (T0547)D316 (1j79A)K172 because P (beta_P) conformation "forbidden" or filtered. T0547 312 :DLEP 1j79A 168 :LTAL T0547 317 :IFIE 1j79A 173 :VVFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=95246 # 1zpdA.312.378 read from T0547.t06.many.frag # found chain 1zpdA in template set T0547 312 :DLEPDIFIE 1zpdA 379 :TPNTTVIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=95247 # 2bjiA.312.81 read from T0547.t06.many.frag # found chain 2bjiA in training set Warning: unaligning (T0547)E314 (2bjiA)N1084 because P (beta_P) conformation "forbidden" or filtered. T0547 312 :DL 2bjiA 1082 :TD T0547 315 :PDIFIE 2bjiA 1085 :PTWIID Number of specific fragments extracted= 2 number of extra gaps= 1 total=95249 # 1woqA.312.73 read from T0547.t06.many.frag # found chain 1woqA in training set T0547 312 :DLEPDIFIE 1woqA 74 :AGSPVGVTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=95250 # 1k87A.312.424 read from T0547.t06.many.frag # found chain 1k87A in template set Warning: unaligning (T0547)D312 (1k87A)R425 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1k87A)R427 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :L 1k87A 426 :R T0547 315 :PDIFIE 1k87A 428 :LMIRLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=95252 # 1bc5A.312.98 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)L313 (1bc5A)G115 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1bc5A)E116 because P (beta_P) conformation "forbidden" or filtered. T0547 312 :D 1bc5A 114 :H T0547 315 :PDIFIE 1bc5A 117 :YRVWSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95254 # 1qtwA.312.136 read from T0547.t06.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)D312 (1qtwA)T137 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1qtwA)V140 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1qtwA)E145 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :LE 1qtwA 138 :QG T0547 316 :DIFI 1qtwA 141 :TAVI Number of specific fragments extracted= 2 number of extra gaps= 3 total=95256 # 1pjhA.312.110 read from T0547.t06.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)D312 (1pjhA)H111 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :LEPDIFIE 1pjhA 112 :SKVLICCL Number of specific fragments extracted= 1 number of extra gaps= 1 total=95257 # 1m1nA.312.344 read from T0547.t06.many.frag # found chain 1m1nA in training set T0547 312 :DLEPDIFIE 1m1nA 346 :LEGKRVMLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=95258 # 1bupA.312.190 read from T0547.t06.many.frag # found chain 1bupA in training set Warning: unaligning (T0547)P315 (1bupA)N194 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1bupA)V195 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1bupA)D199 because D (zeta) conformation "forbidden" or filtered. T0547 312 :DLE 1bupA 191 :AER T0547 317 :IFI 1bupA 196 :LIF Number of specific fragments extracted= 2 number of extra gaps= 2 total=95260 # 1q52A.312.145 read from T0547.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)D316 (1q52A)V150 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DLEP 1q52A 146 :MPKV T0547 317 :IFIE 1q52A 151 :ICLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95262 # 1eokA.312.177 read from T0547.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0547)E314 (1eokA)N180 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1eokA)K181 because E (beta_S) conformation "forbidden" or filtered. T0547 312 :DL 1eokA 178 :PN T0547 316 :DIFIE 1eokA 182 :QLQIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95264 # 7odcA.313.266 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E320 (7odcA)E274 because D (zeta) conformation "forbidden" or filtered. T0547 313 :LEPDIFI 7odcA 267 :SGVRIIA T0547 321 :S 7odcA 275 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=95266 # 1knwA.313.260 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)L313 (1knwA)H261 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1knwA)V263 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1knwA 262 :P T0547 316 :DIFIES 1knwA 264 :KLEIEP Number of specific fragments extracted= 2 number of extra gaps= 2 total=95268 # 1iuqA.313.221 read from T0547.t06.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)E314 (1iuqA)S224 because L (left) conformation "forbidden" or filtered. T0547 313 :L 1iuqA 223 :G T0547 315 :PDIFIES 1iuqA 225 :QLIWIAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=95270 # 1qwgA.313.125 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0547)D316 because of BadResidue code BAD_PEPTIDE at template residue (1qwgA)M129 T0547 313 :LE 1qwgA 126 :NG T0547 317 :IFIES 1qwgA 130 :VLTEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95272 # 1tjyA.313.187 read from T0547.t06.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)P315 (1tjyA)L214 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1tjyA 212 :PD T0547 316 :DIFIES 1tjyA 215 :DAIIAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=95274 # 2bhuA.313.300 read from T0547.t06.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)D316 (2bhuA)L304 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LEP 2bhuA 301 :GTH T0547 317 :IFIES 2bhuA 305 :LLAED Number of specific fragments extracted= 2 number of extra gaps= 1 total=95276 # 1j79A.313.168 read from T0547.t06.many.frag # found chain 1j79A in training set Warning: unaligning (T0547)D316 (1j79A)K172 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :LEP 1j79A 169 :TAL T0547 317 :IFIES 1j79A 173 :VVFEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=95278 # 1tca.313.96 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1tca)P100 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1tca)S105 because S (epsilon) conformation "forbidden" or filtered. T0547 313 :LE 1tca 97 :NK T0547 317 :IFIE 1tca 101 :VLTW Number of specific fragments extracted= 2 number of extra gaps= 2 total=95280 # 1to6A.313.183 read from T0547.t06.many.frag # found chain 1to6A in template set Warning: unaligning (T0547)P315 (1to6A)I186 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1to6A 184 :VH T0547 316 :DIFIES 1to6A 187 :RILADV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95282 # 1x9iA.313.179 read from T0547.t06.many.frag # found chain 1x9iA in training set Warning: unaligning (T0547)E314 (1x9iA)R181 because L (left) conformation "forbidden" or filtered. T0547 313 :L 1x9iA 180 :K T0547 315 :PDIFIES 1x9iA 182 :PTIIAAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=95284 # 1zpdA.313.379 read from T0547.t06.many.frag # found chain 1zpdA in template set T0547 313 :LEPDIFIES 1zpdA 380 :PNTTVIAET Number of specific fragments extracted= 1 number of extra gaps= 0 total=95285 # 1qj4A.313.71 read from T0547.t06.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)P315 (1qj4A)V74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1qj4A)S80 because S (epsilon) conformation "forbidden" or filtered. T0547 313 :LE 1qj4A 72 :EK T0547 316 :DIFIE 1qj4A 75 :ILVGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=95287 # 1i60A.313.134 read from T0547.t06.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)E314 (1i60A)G136 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1i60A)E142 because N (gamma') conformation "forbidden" or filtered. T0547 313 :L 1i60A 135 :Y T0547 315 :PDIFI 1i60A 137 :VKIAL T0547 321 :S 1i60A 143 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=95290 # 1qtwA.313.137 read from T0547.t06.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)P315 (1qtwA)V140 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1qtwA)E145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1qtwA)N146 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :LE 1qtwA 138 :QG T0547 316 :DIFI 1qtwA 141 :TAVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=95292 # 1jftA.313.236 read from T0547.t06.many.frag # found chain 1jftA in template set T0547 313 :LEPDIFIES 1jftA 238 :HRPTAVFCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=95293 # 1u7nA.313.91 read from T0547.t06.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)P315 (1u7nA)A91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1u7nA)S96 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1u7nA 89 :GE T0547 316 :DIFI 1u7nA 92 :DAIF T0547 321 :S 1u7nA 97 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=95296 # 1bli.313.253 read from T0547.t06.many.frag # found chain 1bli in template set Warning: unaligning (T0547)P315 (1bli)M256 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1bli)E261 because N (gamma') conformation "forbidden" or filtered. T0547 313 :LE 1bli 254 :KE T0547 316 :DIFI 1bli 257 :FTVA T0547 321 :S 1bli 262 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=95299 # 1k8qA.313.144 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)E314 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1k8qA)H148 because P (beta_P) conformation "forbidden" or filtered. T0547 313 :L 1k8qA 145 :D T0547 317 :IFIES 1k8qA 149 :YVGHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=95301 # 1zedA.313.303 read from T0547.t06.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)E314 (1zedA)G305 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1zedA)F306 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1zedA)E311 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :L 1zedA 304 :R T0547 316 :DIFI 1zedA 307 :FLFV T0547 321 :S 1zedA 312 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=95304 # 1m1nA.313.345 read from T0547.t06.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)E314 (1m1nA)G348 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1m1nA)R350 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1m1nA)I355 because Y (epsilon') conformation "forbidden" or filtered. T0547 313 :L 1m1nA 347 :E T0547 315 :P 1m1nA 349 :K T0547 317 :IFIE 1m1nA 351 :VMLY Number of specific fragments extracted= 3 number of extra gaps= 3 total=95307 # 1k87A.313.425 read from T0547.t06.many.frag # found chain 1k87A in template set Warning: unaligning (T0547)L313 (1k87A)R426 because Y (epsilon') conformation "forbidden" or filtered. T0547 314 :EPDIFIES 1k87A 427 :RLMIRLVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=95308 # 1muwA.313.172 read from T0547.t06.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)L313 because of BadResidue code BAD_PEPTIDE in next template residue (1muwA)D174 Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)D174 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)I175 Warning: unaligning (T0547)E320 (1muwA)E180 because N (gamma') conformation "forbidden" or filtered. T0547 316 :DIFI 1muwA 176 :RFAI T0547 321 :S 1muwA 181 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=95310 # 1eokA.313.178 read from T0547.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0547)L313 (1eokA)N179 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E314 (1eokA)N180 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1eokA)K181 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIES 1eokA 182 :QLQIAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=95311 # 1pjhA.313.111 read from T0547.t06.many.frag # found chain 1pjhA in template set T0547 313 :LEPDIFIES 1pjhA 112 :SKVLICCLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=95312 # 1dpgA.313.139 read from T0547.t06.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)L313 (1dpgA)G140 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P315 (1dpgA)N142 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1dpgA)E147 because P (beta_P) conformation "forbidden" or filtered. T0547 314 :E 1dpgA 141 :Y T0547 316 :DIFI 1dpgA 143 :RLMI T0547 321 :S 1dpgA 148 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=95315 # 1y7tA.313.121 read from T0547.t06.many.frag # found chain 1y7tA in training set T0547 313 :LEPDIFIES 1y7tA 121 :KDVKVLVVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=95316 # 2bjiA.313.205 read from T0547.t06.many.frag # found chain 2bjiA in training set Warning: unaligning (T0547)P315 (2bjiA)A1208 because Y (epsilon') conformation "forbidden" or filtered. T0547 313 :LE 2bjiA 1206 :GA T0547 316 :DIFIES 2bjiA 1209 :DAYYEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=95318 # 1twdA.313.168 read from T0547.t06.many.frag # found chain 1twdA in training set Warning: unaligning (T0547)E314 (1twdA)A170 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1twdA)G176 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1twdA)A177 because L (left) conformation "forbidden" or filtered. T0547 313 :L 1twdA 169 :D T0547 315 :PDIFI 1twdA 171 :PIIMA Number of specific fragments extracted= 2 number of extra gaps= 2 total=95320 # 2yhx.313.382 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)P315 (2yhx)G386 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X391 T0547 313 :LE 2yhx 384 :SS T0547 316 :DIFI 2yhx 387 :HIAA T0547 321 :S 2yhx 392 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=95323 # 1kqfA.313.546 read from T0547.t06.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)P315 (1kqfA)V549 because E (beta_S) conformation "forbidden" or filtered. T0547 313 :LE 1kqfA 547 :GK T0547 316 :DIFIES 1kqfA 550 :TGYFCQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=95325 # 7odcA.314.267 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E320 (7odcA)E274 because D (zeta) conformation "forbidden" or filtered. T0547 314 :EPDIFI 7odcA 268 :GVRIIA T0547 321 :SG 7odcA 275 :PG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95327 # 1knwA.314.261 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P315 (1knwA)V263 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1knwA 262 :P T0547 316 :DIFIESG 1knwA 264 :KLEIEPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95329 # 1qwgA.314.126 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0547)D316 because of BadResidue code BAD_PEPTIDE at template residue (1qwgA)M129 Warning: unaligning (T0547)G322 (1qwgA)G135 because Y (epsilon') conformation "forbidden" or filtered. T0547 314 :E 1qwgA 127 :G T0547 317 :IFIES 1qwgA 130 :VLTEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=95331 # 1iuqA.314.222 read from T0547.t06.many.frag # found chain 1iuqA in training set T0547 314 :EPDIFIESG 1iuqA 224 :SQLIWIAPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=95332 # 1zpdA.314.380 read from T0547.t06.many.frag # found chain 1zpdA in template set T0547 314 :EPDIFIESG 1zpdA 381 :NTTVIAETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=95333 # 1tjyA.314.188 read from T0547.t06.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)P315 (1tjyA)L214 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1tjyA 213 :D T0547 316 :DIFIESG 1tjyA 215 :DAIIAPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=95335 # 2bhuA.314.301 read from T0547.t06.many.frag # found chain 2bhuA in training set T0547 314 :EPDIFIESG 2bhuA 302 :THLLLAEDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=95336 # 1tca.314.97 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1tca)P100 because P (beta_P) conformation "forbidden" or filtered. T0547 314 :E 1tca 98 :K T0547 317 :IFIESG 1tca 101 :VLTWSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=95338 # 1bli.314.254 read from T0547.t06.many.frag # found chain 1bli in template set Warning: unaligning (T0547)P315 (1bli)M256 because L (left) conformation "forbidden" or filtered. T0547 314 :E 1bli 255 :E T0547 316 :DIFIESG 1bli 257 :FTVAEYW Number of specific fragments extracted= 2 number of extra gaps= 1 total=95340 # 1u7nA.314.92 read from T0547.t06.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)P315 (1u7nA)A91 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1u7nA 90 :E T0547 316 :DIFIESG 1u7nA 92 :DAIFSAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95342 # 1j79A.314.169 read from T0547.t06.many.frag # found chain 1j79A in training set Warning: unaligning (T0547)S321 (1j79A)H177 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1j79A)I178 because P (beta_P) conformation "forbidden" or filtered. T0547 314 :EPDIFIE 1j79A 170 :ALKVVFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=95343 # 1zedA.314.304 read from T0547.t06.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)P315 (1zedA)F306 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1zedA 305 :G T0547 316 :DIFIESG 1zedA 307 :FLFVEGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95345 # 1to6A.314.184 read from T0547.t06.many.frag # found chain 1to6A in template set Warning: unaligning (T0547)P315 (1to6A)I186 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1to6A)V193 because G (3-10) conformation "forbidden" or filtered. T0547 314 :E 1to6A 185 :H T0547 316 :DIFIES 1to6A 187 :RILADV Number of specific fragments extracted= 2 number of extra gaps= 2 total=95347 # 1jftA.314.237 read from T0547.t06.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)G322 (1jftA)G247 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :EPDIFIES 1jftA 239 :RPTAVFCG Number of specific fragments extracted= 1 number of extra gaps= 1 total=95348 # 1qj4A.314.72 read from T0547.t06.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)P315 (1qj4A)V74 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1qj4A 73 :K T0547 316 :DIFIESG 1qj4A 75 :ILVGESC Number of specific fragments extracted= 2 number of extra gaps= 1 total=95350 # 1i60A.314.135 read from T0547.t06.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)E314 (1i60A)G136 because T (delta_L) conformation "forbidden" or filtered. T0547 315 :PDIFIESG 1i60A 137 :VKIALEFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=95351 # 1muwA.314.173 read from T0547.t06.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)E314 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)D174 Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)I175 Warning: unaligning (T0547)G322 (1muwA)K182 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIES 1muwA 176 :RFAIEP Number of specific fragments extracted= 1 number of extra gaps= 2 total=95352 # 1k87A.314.426 read from T0547.t06.many.frag # found chain 1k87A in template set T0547 314 :EPDIFIESG 1k87A 427 :RLMIRLVKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=95353 # 1pjhA.314.112 read from T0547.t06.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)E314 (1pjhA)K113 because P (beta_P) conformation "forbidden" or filtered. T0547 315 :PDIFIESG 1pjhA 114 :VLICCLNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=95354 # 1yt8A.314.429 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)D316 (1yt8A)R432 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1yt8A)T436 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1yt8A)C437 because Y (epsilon') conformation "forbidden" or filtered. T0547 314 :EP 1yt8A 430 :AE T0547 317 :IFI 1yt8A 433 :YVL T0547 322 :G 1yt8A 438 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=95357 # 1qtwA.314.138 read from T0547.t06.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)P315 (1qtwA)V140 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1qtwA 139 :G T0547 316 :DIFIESG 1qtwA 141 :TAVIENT Number of specific fragments extracted= 2 number of extra gaps= 1 total=95359 # 1q52A.314.147 read from T0547.t06.many.frag # found chain 1q52A in training set T0547 314 :EPDIFIESG 1q52A 148 :KVVICLVNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=95360 # 1x9iA.314.180 read from T0547.t06.many.frag # found chain 1x9iA in training set Warning: unaligning (T0547)E314 (1x9iA)R181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I319 (1x9iA)A186 because Y (epsilon') conformation "forbidden" or filtered. T0547 315 :PDIF 1x9iA 182 :PTII T0547 320 :ESG 1x9iA 187 :AES Number of specific fragments extracted= 2 number of extra gaps= 2 total=95362 # 1k8qA.314.145 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)P315 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1k8qA)S153 because S (epsilon) conformation "forbidden" or filtered. T0547 314 :E 1k8qA 146 :K T0547 316 :DIFIE 1k8qA 148 :HYVGH T0547 322 :G 1k8qA 154 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=95365 # 1m1nA.314.346 read from T0547.t06.many.frag # found chain 1m1nA in training set T0547 314 :EPDIFIESG 1m1nA 348 :GKRVMLYIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=95366 # 1dpgA.314.140 read from T0547.t06.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)P315 (1dpgA)N142 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1dpgA)P149 because C (cis) conformation "forbidden" or filtered. T0547 314 :E 1dpgA 141 :Y T0547 316 :DIFIES 1dpgA 143 :RLMIEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=95368 # 1bc5A.314.100 read from T0547.t06.many.frag # found chain 1bc5A in template set T0547 314 :EPDIFIESG 1bc5A 116 :EYRVWSAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=95369 # 1uasA.314.156 read from T0547.t06.many.frag # found chain 1uasA in training set T0547 314 :EPDIFIESG 1uasA 157 :IFFSLCEWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=95370 # 1l5oA.314.167 read from T0547.t06.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)P315 (1l5oA)L169 because E (beta_S) conformation "forbidden" or filtered. T0547 314 :E 1l5oA 168 :T T0547 316 :DIFIESG 1l5oA 170 :FGVGELG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95372 # 1uf3A.314.179 read from T0547.t06.many.frag # found chain 1uf3A in template set T0547 314 :EPDIFIESG 1uf3A 180 :NPLLVLVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=95373 # 7odcA.315.268 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 315 :PDIFIESGR 7odcA 269 :VRIIAEPGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=95374 # 1knwA.315.262 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P315 (1knwA)V263 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1knwA 264 :KLEIEPGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=95375 # 1zpdA.315.381 read from T0547.t06.many.frag # found chain 1zpdA in template set T0547 315 :PDIFIESGR 1zpdA 382 :TTVIAETGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=95376 # 1qwgA.315.127 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0547)D316 because of BadResidue code BAD_PEPTIDE at template residue (1qwgA)M129 T0547 317 :IFIESGR 1qwgA 130 :VLTEVGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=95377 # 1iuqA.315.223 read from T0547.t06.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)D316 (1iuqA)L226 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1iuqA)G233 because T (delta_L) conformation "forbidden" or filtered. T0547 315 :P 1iuqA 225 :Q T0547 317 :IFIESG 1iuqA 227 :IWIAPS Number of specific fragments extracted= 2 number of extra gaps= 2 total=95379 # 1tca.315.98 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)P315 (1tca)L99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1tca)P100 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1tca)S105 because S (epsilon) conformation "forbidden" or filtered. T0547 317 :IFIE 1tca 101 :VLTW T0547 322 :GR 1tca 106 :QG Number of specific fragments extracted= 2 number of extra gaps= 2 total=95381 # 1zedA.315.305 read from T0547.t06.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)P315 (1zedA)F306 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1zedA 307 :FLFVEGGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=95382 # 1tjyA.315.189 read from T0547.t06.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)P315 (1tjyA)L214 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1tjyA 215 :DAIIAPDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=95383 # 1bli.315.255 read from T0547.t06.many.frag # found chain 1bli in template set Warning: unaligning (T0547)P315 (1bli)M256 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1bli)F257 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFIESGR 1bli 258 :TVAEYWS Number of specific fragments extracted= 1 number of extra gaps= 1 total=95384 # 2bhuA.315.302 read from T0547.t06.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)G322 (2bhuA)H310 because G (3-10) conformation "forbidden" or filtered. T0547 315 :PDIFIES 2bhuA 303 :HLLLAED T0547 323 :R 2bhuA 311 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=95386 # 1i60A.315.136 read from T0547.t06.many.frag # found chain 1i60A in training set T0547 315 :PDIFIESGR 1i60A 137 :VKIALEFVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=95387 # 1u7nA.315.93 read from T0547.t06.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)P315 (1u7nA)A91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1u7nA)G98 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :DIFIES 1u7nA 92 :DAIFSA T0547 323 :R 1u7nA 99 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=95389 # 1j79A.315.170 read from T0547.t06.many.frag # found chain 1j79A in training set Warning: unaligning (T0547)S321 (1j79A)H177 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1j79A)I178 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1j79A)T179 because G (3-10) conformation "forbidden" or filtered. T0547 315 :PDIFIE 1j79A 171 :LKVVFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=95390 # 1jftA.315.238 read from T0547.t06.many.frag # found chain 1jftA in template set T0547 315 :PDIFIESGR 1jftA 240 :PTAVFCGGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=95391 # 1qtwA.315.139 read from T0547.t06.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)P315 (1qtwA)V140 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D316 (1qtwA)T141 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFIESGR 1qtwA 142 :AVIENTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=95392 # 1yt8A.315.430 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)D316 (1yt8A)R432 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1yt8A)T436 because Y (epsilon') conformation "forbidden" or filtered. T0547 315 :P 1yt8A 431 :E T0547 317 :IFI 1yt8A 433 :YVL T0547 321 :SGR 1yt8A 437 :CGS Number of specific fragments extracted= 3 number of extra gaps= 2 total=95395 # 1qexA.315.93 read from T0547.t06.many.frag # found chain 1qexA in template set Warning: unaligning (T0547)P315 (1qexA)V94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1qexA)E99 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :DIFI 1qexA 95 :KVII T0547 321 :SGR 1qexA 100 :RGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=95397 # 1bc5A.315.101 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)R323 (1bc5A)S125 because S (epsilon) conformation "forbidden" or filtered. T0547 315 :PDIFIESG 1bc5A 117 :YRVWSAAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=95398 # 1q52A.315.148 read from T0547.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)D316 (1q52A)V150 because E (beta_S) conformation "forbidden" or filtered. T0547 315 :P 1q52A 149 :V T0547 317 :IFIESGR 1q52A 151 :ICLVNGW Number of specific fragments extracted= 2 number of extra gaps= 1 total=95400 # 1xw8A.315.133 read from T0547.t06.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)E320 (1xw8A)L139 because P (beta_P) conformation "forbidden" or filtered. T0547 315 :PDIFI 1xw8A 134 :LILVG T0547 321 :SGR 1xw8A 140 :AGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=95402 # 1to6A.315.185 read from T0547.t06.many.frag # found chain 1to6A in template set Warning: unaligning (T0547)P315 (1to6A)I186 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1to6A)V193 because G (3-10) conformation "forbidden" or filtered. T0547 316 :DIFIES 1to6A 187 :RILADV T0547 323 :R 1to6A 194 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=95404 # 1q7zA.315.467 read from T0547.t06.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)P315 (1q7zA)D468 because G (3-10) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1q7zA 469 :RVIFDPGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=95405 # 1m1nA.315.347 read from T0547.t06.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)S321 (1m1nA)I355 because Y (epsilon') conformation "forbidden" or filtered. T0547 315 :PDIFIE 1m1nA 349 :KRVMLY T0547 322 :GR 1m1nA 356 :GG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95407 # 1muwA.315.174 read from T0547.t06.many.frag # found chain 1muwA in training set Warning: unaligning (T0547)P315 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)I175 T0547 316 :DIFIESGR 1muwA 176 :RFAIEPKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=95408 # 2bmaA.315.252 read from T0547.t06.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)P315 (2bmaA)Q231 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (2bmaA)G237 because Y (epsilon') conformation "forbidden" or filtered. T0547 316 :DIFIE 2bmaA 232 :TAVVS T0547 322 :GR 2bmaA 238 :SG Number of specific fragments extracted= 2 number of extra gaps= 2 total=95410 # 1uasA.315.157 read from T0547.t06.many.frag # found chain 1uasA in training set T0547 315 :PDIFIESGR 1uasA 158 :FFSLCEWGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=95411 # 1pjhA.315.113 read from T0547.t06.many.frag # found chain 1pjhA in template set Warning: unaligning (T0547)D316 (1pjhA)L115 because E (beta_S) conformation "forbidden" or filtered. T0547 315 :P 1pjhA 114 :V T0547 317 :IFIESGR 1pjhA 116 :ICCLNGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=95413 # 1qj4A.315.73 read from T0547.t06.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)P315 (1qj4A)V74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1qj4A)S80 because S (epsilon) conformation "forbidden" or filtered. T0547 316 :DIFIE 1qj4A 75 :ILVGE T0547 322 :GR 1qj4A 81 :CG Number of specific fragments extracted= 2 number of extra gaps= 2 total=95415 # 1hd2A.315.93 read from T0547.t06.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)P315 (1hd2A)V94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1hd2A)T101 because G (3-10) conformation "forbidden" or filtered. T0547 316 :DIFIES 1hd2A 95 :RLLADP T0547 323 :R 1hd2A 102 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=95417 # 1k87A.315.427 read from T0547.t06.many.frag # found chain 1k87A in template set Warning: unaligning (T0547)E320 (1k87A)V433 because E (beta_S) conformation "forbidden" or filtered. T0547 315 :PDIFI 1k87A 428 :LMIRL T0547 321 :SGR 1k87A 434 :KGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95419 # 7odcA.316.269 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E320 (7odcA)E274 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (7odcA)G276 because H (helix) conformation "forbidden" or filtered. T0547 316 :DIFI 7odcA 270 :RIIA T0547 321 :S 7odcA 275 :P T0547 323 :RF 7odcA 277 :RY Number of specific fragments extracted= 3 number of extra gaps= 2 total=95422 # 1knwA.316.263 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)D316 (1knwA)K264 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1knwA)E268 because D (zeta) conformation "forbidden" or filtered. T0547 317 :IFI 1knwA 265 :LEI T0547 321 :SGRF 1knwA 269 :PGRF Number of specific fragments extracted= 2 number of extra gaps= 2 total=95424 # 1zpdA.316.382 read from T0547.t06.many.frag # found chain 1zpdA in template set T0547 316 :DIFIESGRF 1zpdA 383 :TVIAETGDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=95425 # 1qwgA.316.128 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)D316 because of BadResidue code BAD_PEPTIDE at template residue (1qwgA)M129 T0547 317 :IFIESGRF 1qwgA 130 :VLTEVGKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=95426 # 1zedA.316.306 read from T0547.t06.many.frag # found chain 1zedA in training set T0547 316 :DIFIESGRF 1zedA 307 :FLFVEGGRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=95427 # 1tca.316.99 read from T0547.t06.many.frag # found chain 1tca in training set T0547 316 :DIFIESGRF 1tca 100 :PVLTWSQGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=95428 # 1jftA.316.239 read from T0547.t06.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)G322 (1jftA)G247 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIES 1jftA 241 :TAVFCG T0547 323 :RF 1jftA 248 :DI Number of specific fragments extracted= 2 number of extra gaps= 1 total=95430 # 2bhuA.316.303 read from T0547.t06.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)E320 (2bhuA)E308 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (2bhuA)H310 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (2bhuA)N312 because L (left) conformation "forbidden" or filtered. T0547 316 :DIFI 2bhuA 304 :LLLA T0547 321 :S 2bhuA 309 :D T0547 323 :R 2bhuA 311 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=95433 # 1q7zA.316.468 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 316 :DIFIESGRF 1q7zA 469 :RVIFDPGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=95434 # 1u7nA.316.94 read from T0547.t06.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)I317 (1u7nA)A93 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1u7nA)G98 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :D 1u7nA 92 :D T0547 318 :FIES 1u7nA 94 :IFSA T0547 323 :RF 1u7nA 99 :NT Number of specific fragments extracted= 3 number of extra gaps= 2 total=95437 # 1vh4A.316.86 read from T0547.t06.many.frag # found chain 1vh4A in training set Warning: unaligning (T0547)S321 (1vh4A)D90 because L (left) conformation "forbidden" or filtered. T0547 316 :DIFIE 1vh4A 85 :RLVFV T0547 322 :GRF 1vh4A 91 :GRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=95439 # 2bmaA.316.253 read from T0547.t06.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)G322 (2bmaA)S238 because G (3-10) conformation "forbidden" or filtered. T0547 316 :DIFIES 2bmaA 232 :TAVVSG T0547 323 :RF 2bmaA 239 :GN Number of specific fragments extracted= 2 number of extra gaps= 1 total=95441 # 1m1nA.316.348 read from T0547.t06.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)S321 (1m1nA)I355 because Y (epsilon') conformation "forbidden" or filtered. T0547 316 :DIFIE 1m1nA 350 :RVMLY T0547 322 :GRF 1m1nA 356 :GGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95443 # 1i60A.316.137 read from T0547.t06.many.frag # found chain 1i60A in training set Warning: unaligning (T0547)S321 (1i60A)F143 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :DIFIE 1i60A 138 :KIALE T0547 322 :GRF 1i60A 144 :VGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=95445 # 1tjyA.316.190 read from T0547.t06.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)G322 (1tjyA)D221 because E (beta_S) conformation "forbidden" or filtered. T0547 316 :DIFIES 1tjyA 215 :DAIIAP T0547 323 :RF 1tjyA 222 :AN Number of specific fragments extracted= 2 number of extra gaps= 1 total=95447 # 1ualA.316.126 read from T0547.t06.many.frag # found chain 1ualA in training set Warning: unaligning (T0547)G322 (1ualA)G113 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :DIFIES 1ualA 107 :KLILVC T0547 323 :RF 1ualA 114 :RY Number of specific fragments extracted= 2 number of extra gaps= 1 total=95449 # 1qexA.316.94 read from T0547.t06.many.frag # found chain 1qexA in template set T0547 316 :DIFIESGRF 1qexA 95 :KVIIERGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=95450 # 1woqA.316.77 read from T0547.t06.many.frag # found chain 1woqA in training set T0547 316 :DIFIESGRF 1woqA 78 :VGVTFPGII Number of specific fragments extracted= 1 number of extra gaps= 0 total=95451 # 1yt8A.316.431 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)D316 (1yt8A)R432 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E320 (1yt8A)T436 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1yt8A)C437 because Y (epsilon') conformation "forbidden" or filtered. T0547 317 :IFI 1yt8A 433 :YVL T0547 322 :GRF 1yt8A 438 :GSS Number of specific fragments extracted= 2 number of extra gaps= 2 total=95453 # 1iuqA.316.224 read from T0547.t06.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)D316 (1iuqA)L226 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1iuqA)G233 because T (delta_L) conformation "forbidden" or filtered. T0547 317 :IFIESG 1iuqA 227 :IWIAPS T0547 324 :F 1iuqA 234 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=95455 # 1hd2A.316.94 read from T0547.t06.many.frag # found chain 1hd2A in training set Warning: unaligning (T0547)G322 (1hd2A)T101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1hd2A)G102 because L (left) conformation "forbidden" or filtered. T0547 316 :DIFIES 1hd2A 95 :RLLADP T0547 324 :F 1hd2A 103 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=95457 # 1q52A.316.149 read from T0547.t06.many.frag # found chain 1q52A in training set T0547 316 :DIFIESGRF 1q52A 150 :VICLVNGWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=95458 # 1xw8A.316.134 read from T0547.t06.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)S321 (1xw8A)A140 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1xw8A)S142 because P (beta_P) conformation "forbidden" or filtered. T0547 316 :DIFIE 1xw8A 135 :ILVGL T0547 322 :G 1xw8A 141 :G T0547 324 :F 1xw8A 143 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=95461 # 1uasA.316.158 read from T0547.t06.many.frag # found chain 1uasA in training set Warning: unaligning (T0547)F324 (1uasA)E167 because L (left) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1uasA 159 :FSLCEWGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=95462 # 1j79A.316.171 read from T0547.t06.many.frag # found chain 1j79A in training set Warning: unaligning (T0547)E320 (1j79A)E176 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1j79A)H177 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1j79A)T179 because G (3-10) conformation "forbidden" or filtered. T0547 316 :DIFI 1j79A 172 :KVVF T0547 322 :G 1j79A 178 :I T0547 324 :F 1j79A 180 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=95465 # 1bli.316.256 read from T0547.t06.many.frag # found chain 1bli in template set Warning: unaligning (T0547)E320 (1bli)E261 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1bli)W263 because N (gamma') conformation "forbidden" or filtered. T0547 316 :DIFI 1bli 257 :FTVA T0547 321 :S 1bli 262 :Y T0547 323 :RF 1bli 264 :SY Number of specific fragments extracted= 3 number of extra gaps= 2 total=95468 # 1oflA.316.296 read from T0547.t06.many.frag # found chain 1oflA in training set T0547 316 :DIFIESGRF 1oflA 322 :ALYLNPGAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=95469 # 1qtwA.316.140 read from T0547.t06.many.frag # found chain 1qtwA in training set Warning: unaligning (T0547)F324 (1qtwA)G149 because L (left) conformation "forbidden" or filtered. T0547 316 :DIFIESGR 1qtwA 141 :TAVIENTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=95470 # 1kqfA.316.549 read from T0547.t06.many.frag # found chain 1kqfA in training set T0547 316 :DIFIESGRF 1kqfA 550 :TGYFCQGFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=95471 # 1u0jA.316.150 read from T0547.t06.many.frag # found chain 1u0jA in template set T0547 316 :DIFIESGRF 1u0jA 374 :VIWWEEGKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=95472 # 1knwA.317.264 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E320 (1knwA)E268 because D (zeta) conformation "forbidden" or filtered. T0547 317 :IFI 1knwA 265 :LEI T0547 321 :SGRFV 1knwA 269 :PGRFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95474 # 7odcA.317.270 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 317 :IFIESGRFV 7odcA 271 :IIAEPGRYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=95475 # 1jftA.317.240 read from T0547.t06.many.frag # found chain 1jftA in template set Warning: unaligning (T0547)G322 (1jftA)G247 because E (beta_S) conformation "forbidden" or filtered. T0547 317 :IFIES 1jftA 242 :AVFCG T0547 323 :RFV 1jftA 248 :DIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=95477 # 1zedA.317.307 read from T0547.t06.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)R323 (1zedA)R314 because G (3-10) conformation "forbidden" or filtered. T0547 317 :IFIESG 1zedA 308 :LFVEGG T0547 324 :FV 1zedA 315 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=95479 # 1qwgA.317.129 read from T0547.t06.many.frag # found chain 1qwgA in training set T0547 317 :IFIESGRFV 1qwgA 130 :VLTEVGKKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=95480 # 1zpdA.317.383 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)E320 (1zpdA)E387 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFI 1zpdA 384 :VIA T0547 321 :SGRFV 1zpdA 388 :TGDSW Number of specific fragments extracted= 2 number of extra gaps= 1 total=95482 # 1u7nA.317.95 read from T0547.t06.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)I317 (1u7nA)A93 because Y (epsilon') conformation "forbidden" or filtered. T0547 318 :FIESGRFV 1u7nA 94 :IFSAGNTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=95483 # 2bmaA.317.254 read from T0547.t06.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)S321 (2bmaA)G237 because Y (epsilon') conformation "forbidden" or filtered. T0547 317 :IFIE 2bmaA 233 :AVVS T0547 322 :GRFV 2bmaA 238 :SGNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95485 # 1yt8A.317.432 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 317 :IFIESGRFV 1yt8A 433 :YVLTCGSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=95486 # 1vh4A.317.87 read from T0547.t06.many.frag # found chain 1vh4A in training set T0547 317 :IFIESGRFV 1vh4A 86 :LVFVDGRYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=95487 # 1rwrA.317.121 read from T0547.t06.many.frag # found chain 1rwrA in training set T0547 317 :IFIESGRFV 1rwrA 122 :LTLTTGRPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=95488 # 1q7zA.317.469 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 317 :IFIESGRFV 1q7zA 470 :VIFDPGVLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=95489 # 1ualA.317.127 read from T0547.t06.many.frag # found chain 1ualA in training set Warning: unaligning (T0547)E320 (1ualA)V111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1ualA)G113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1ualA)Y115 because S (epsilon) conformation "forbidden" or filtered. T0547 317 :IFI 1ualA 108 :LIL T0547 321 :S 1ualA 112 :C T0547 323 :R 1ualA 114 :R T0547 325 :V 1ualA 116 :E Number of specific fragments extracted= 4 number of extra gaps= 3 total=95493 # 1gjwA.317.381 read from T0547.t06.many.frag # found chain 1gjwA in template set T0547 317 :IFIESGRFV 1gjwA 382 :ARLDMGHAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=95494 # 1kqfA.317.550 read from T0547.t06.many.frag # found chain 1kqfA in training set T0547 317 :IFIESGRFV 1kqfA 551 :GYFCQGFNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=95495 # 1l5oA.317.170 read from T0547.t06.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)G322 (1l5oA)G176 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1l5oA)A178 because T (delta_L) conformation "forbidden" or filtered. T0547 317 :IFIES 1l5oA 171 :GVGEL T0547 323 :R 1l5oA 177 :M T0547 325 :V 1l5oA 179 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=95498 # 1wkcA.317.104 read from T0547.t06.many.frag # found chain 1wkcA in training set T0547 317 :IFIESGRFV 1wkcA 105 :LVVVPGLAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=95499 # 2bjiA.317.209 read from T0547.t06.many.frag # found chain 2bjiA in training set Warning: unaligning (T0547)E320 (2bjiA)E1213 because Y (epsilon') conformation "forbidden" or filtered. T0547 317 :IFI 2bjiA 1210 :AYY T0547 321 :SGRFV 2bjiA 1214 :MGIHC Number of specific fragments extracted= 2 number of extra gaps= 1 total=95501 # 1tca.317.100 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)E320 (1tca)W104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1tca)S105 because S (epsilon) conformation "forbidden" or filtered. T0547 317 :IFI 1tca 101 :VLT T0547 322 :GRFV 1tca 106 :QGGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95503 # 2bhuA.317.304 read from T0547.t06.many.frag # found chain 2bhuA in training set Warning: unaligning (T0547)E320 (2bhuA)E308 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (2bhuA)H310 because G (3-10) conformation "forbidden" or filtered. T0547 317 :IFI 2bhuA 305 :LLA T0547 321 :S 2bhuA 309 :D T0547 323 :RFV 2bhuA 311 :RNL Number of specific fragments extracted= 3 number of extra gaps= 2 total=95506 # 1m1nA.317.349 read from T0547.t06.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)S321 (1m1nA)I355 because Y (epsilon') conformation "forbidden" or filtered. T0547 317 :IFIE 1m1nA 351 :VMLY T0547 322 :GRFV 1m1nA 356 :GGLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=95508 # 1pmmA.317.268 read from T0547.t06.many.frag # found chain 1pmmA in template set T0547 317 :IFIESGRFV 1pmmA 269 :SISASGHKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=95509 # 1tjyA.317.191 read from T0547.t06.many.frag # found chain 1tjyA in training set T0547 317 :IFIESGRFV 1tjyA 216 :AIIAPDANA Number of specific fragments extracted= 1 number of extra gaps= 0 total=95510 # 2tpt.317.237 read from T0547.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0547)G322 (2tpt)N243 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (2tpt)Q244 because Y (epsilon') conformation "forbidden" or filtered. T0547 317 :IFIES 2tpt 238 :LLTDM T0547 324 :FV 2tpt 245 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95512 # 1xw8A.317.135 read from T0547.t06.many.frag # found chain 1xw8A in template set Warning: unaligning (T0547)S321 (1xw8A)A140 because P (beta_P) conformation "forbidden" or filtered. T0547 317 :IFIE 1xw8A 136 :LVGL T0547 322 :GRFV 1xw8A 141 :GSEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95514 # 1y4wA.317.206 read from T0547.t06.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)R323 (1y4wA)P232 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)V325 (1y4wA)N234 because S (epsilon) conformation "forbidden" or filtered. T0547 317 :IFIESG 1y4wA 226 :LVSEFG T0547 324 :F 1y4wA 233 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=95516 # 1sddA.317.61 read from T0547.t06.many.frag # found chain 1sddA in template set T0547 317 :IFIESGRFV 1sddA 62 :LYAEVGDIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=95517 # 1qj4A.317.75 read from T0547.t06.many.frag # found chain 1qj4A in training set T0547 317 :IFIESGRFV 1qj4A 76 :LVGESCGGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=95518 # 1oflA.317.297 read from T0547.t06.many.frag # found chain 1oflA in training set T0547 317 :IFIESGRFV 1oflA 323 :LYLNPGAMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=95519 # 2yhx.317.181 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)G322 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X188 T0547 317 :IFIES 2yhx 183 :SVADI T0547 323 :RFV 2yhx 189 :DSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=95521 # 1knwA.318.265 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 318 :FIESGRFVA 1knwA 266 :EIEPGRFLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=95522 # 7odcA.318.271 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E320 (7odcA)E274 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (7odcA)G276 because H (helix) conformation "forbidden" or filtered. T0547 318 :FI 7odcA 272 :IA T0547 321 :S 7odcA 275 :P T0547 323 :RFVA 7odcA 277 :RYYV Number of specific fragments extracted= 3 number of extra gaps= 2 total=95525 # 1jftA.318.241 read from T0547.t06.many.frag # found chain 1jftA in template set T0547 318 :FIESGRFVA 1jftA 243 :VFCGGDIMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=95526 # 1zedA.318.308 read from T0547.t06.many.frag # found chain 1zedA in training set T0547 318 :FIESGRFVA 1zedA 309 :FVEGGRIDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=95527 # 1u7nA.318.96 read from T0547.t06.many.frag # found chain 1u7nA in template set Warning: unaligning (T0547)G322 (1u7nA)G98 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FIES 1u7nA 94 :IFSA T0547 323 :RFVA 1u7nA 99 :NTGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95529 # 1zpdA.318.384 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)S321 (1zpdA)T388 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FIE 1zpdA 385 :IAE T0547 322 :GRFVA 1zpdA 389 :GDSWF Number of specific fragments extracted= 2 number of extra gaps= 1 total=95531 # 2bmaA.318.255 read from T0547.t06.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)S321 (2bmaA)G237 because Y (epsilon') conformation "forbidden" or filtered. T0547 318 :FIE 2bmaA 234 :VVS T0547 322 :GRFVA 2bmaA 238 :SGNVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95533 # 1rwrA.318.122 read from T0547.t06.many.frag # found chain 1rwrA in training set Warning: unaligning (T0547)G322 (1rwrA)G127 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FIES 1rwrA 123 :TLTT T0547 323 :RFVA 1rwrA 128 :RPSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95535 # 1yt8A.318.433 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)E320 (1yt8A)T436 because Y (epsilon') conformation "forbidden" or filtered. T0547 318 :FI 1yt8A 434 :VL T0547 321 :SGRFVA 1yt8A 437 :CGSSLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95537 # 1l5oA.318.171 read from T0547.t06.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)G322 (1l5oA)G176 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1l5oA)A178 because T (delta_L) conformation "forbidden" or filtered. T0547 318 :FIES 1l5oA 172 :VGEL T0547 323 :R 1l5oA 177 :M T0547 325 :VA 1l5oA 179 :NT Number of specific fragments extracted= 3 number of extra gaps= 2 total=95540 # 1qwgA.318.130 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)G322 (1qwgA)G135 because Y (epsilon') conformation "forbidden" or filtered. T0547 318 :FIES 1qwgA 131 :LTEV T0547 323 :RFVA 1qwgA 136 :KKMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=95542 # 1vh4A.318.88 read from T0547.t06.many.frag # found chain 1vh4A in training set T0547 318 :FIESGRFVA 1vh4A 87 :VFVDGRYVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=95543 # 1wkcA.318.105 read from T0547.t06.many.frag # found chain 1wkcA in training set Warning: unaligning (T0547)G322 (1wkcA)G110 because Y (epsilon') conformation "forbidden" or filtered. T0547 318 :FIES 1wkcA 106 :VVVP T0547 323 :RFVA 1wkcA 111 :LAFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=95545 # 1m1nA.318.350 read from T0547.t06.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)G322 (1m1nA)G356 because H (helix) conformation "forbidden" or filtered. T0547 318 :FIES 1m1nA 352 :MLYI T0547 323 :RFVA 1m1nA 357 :GLRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=95547 # 2bjiA.318.210 read from T0547.t06.many.frag # found chain 2bjiA in training set T0547 318 :FIESGRFVA 2bjiA 1211 :YYEMGIHCW Number of specific fragments extracted= 1 number of extra gaps= 0 total=95548 # 1y4wA.318.207 read from T0547.t06.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)R323 (1y4wA)P232 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1y4wA)A235 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FIESG 1y4wA 227 :VSEFG T0547 324 :FV 1y4wA 233 :YN Number of specific fragments extracted= 2 number of extra gaps= 2 total=95550 # 1kv7A.318.228 read from T0547.t06.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)E320 (1kv7A)S259 because Y (epsilon') conformation "forbidden" or filtered. T0547 318 :FI 1kv7A 257 :IA T0547 321 :SGRFVA 1kv7A 260 :DGGLLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=95552 # 1r9jA.318.490 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)E320 (1r9jA)P491 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1r9jA)D493 because Y (epsilon') conformation "forbidden" or filtered. T0547 318 :FI 1r9jA 489 :IR T0547 321 :S 1r9jA 492 :S T0547 323 :RFVA 1r9jA 494 :QTET Number of specific fragments extracted= 3 number of extra gaps= 2 total=95555 # 1kqfA.318.551 read from T0547.t06.many.frag # found chain 1kqfA in training set T0547 318 :FIESGRFVA 1kqfA 552 :YFCQGFNPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=95556 # 2tpt.318.238 read from T0547.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0547)E320 (2tpt)D241 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (2tpt)A247 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FI 2tpt 239 :LT T0547 321 :SGRFV 2tpt 242 :MNQVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=95558 # 1b43A.318.169 read from T0547.t06.many.frag # found chain 1b43A in template set T0547 318 :FIESGRFVA 1b43A 169 :ASQDYDSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=95559 # 1gjwA.318.382 read from T0547.t06.many.frag # found chain 1gjwA in template set Warning: unaligning (T0547)S321 (1gjwA)M386 because L (left) conformation "forbidden" or filtered. T0547 318 :FIE 1gjwA 383 :RLD T0547 322 :GRFVA 1gjwA 387 :GHALP Number of specific fragments extracted= 2 number of extra gaps= 1 total=95561 # 2yhx.318.182 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)S321 (2yhx)I187 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X188 T0547 318 :FIE 2yhx 184 :VAD T0547 323 :RFVA 2yhx 189 :DSHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95563 # 1ualA.318.128 read from T0547.t06.many.frag # found chain 1ualA in training set Warning: unaligning (T0547)G322 (1ualA)G113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1ualA)G117 because S (epsilon) conformation "forbidden" or filtered. T0547 318 :FIES 1ualA 109 :ILVC T0547 323 :RFV 1ualA 114 :RYE Number of specific fragments extracted= 2 number of extra gaps= 2 total=95565 # 1rcqA.318.205 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 318 :FIESGRFVA 1rcqA 206 :WVRPGILLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=95566 # 1lw7A.318.198 read from T0547.t06.many.frag # found chain 1lw7A in template set Warning: unaligning (T0547)E320 (1lw7A)E257 because P (beta_P) conformation "forbidden" or filtered. T0547 318 :FI 1lw7A 255 :AW T0547 321 :SGRFVA 1lw7A 258 :YGREFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95568 # 1tca.318.101 read from T0547.t06.many.frag # found chain 1tca in training set Warning: unaligning (T0547)S321 (1tca)S105 because S (epsilon) conformation "forbidden" or filtered. T0547 318 :FIE 1tca 102 :LTW T0547 322 :GRFVA 1tca 106 :QGGLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95570 # 1q7zA.318.470 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 318 :FIESGRFVA 1q7zA 471 :IFDPGVLPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=95571 # 1p7tA.318.423 read from T0547.t06.many.frag # found chain 1p7tA in template set T0547 318 :FIESGRFVA 1p7tA 424 :IMDEERRTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=95572 # 1tz9A.318.324 read from T0547.t06.many.frag # found chain 1tz9A in template set Warning: unaligning (T0547)E320 (1tz9A)D317 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1tz9A)R320 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1tz9A)W323 because L (left) conformation "forbidden" or filtered. T0547 318 :FI 1tz9A 315 :RP T0547 321 :SG 1tz9A 318 :HG T0547 324 :FV 1tz9A 321 :AI Number of specific fragments extracted= 3 number of extra gaps= 3 total=95575 # 1knwA.319.266 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 319 :IESGRFVAA 1knwA 267 :IEPGRFLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=95576 # 7odcA.319.272 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)S321 (7odcA)P275 because P (beta_P) conformation "forbidden" or filtered. T0547 319 :IE 7odcA 273 :AE T0547 322 :GRFVAA 7odcA 276 :GRYYVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95578 # 1jftA.319.242 read from T0547.t06.many.frag # found chain 1jftA in template set T0547 319 :IESGRFVAA 1jftA 244 :FCGGDIMAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=95579 # 1zedA.319.309 read from T0547.t06.many.frag # found chain 1zedA in training set Warning: unaligning (T0547)R323 (1zedA)R314 because G (3-10) conformation "forbidden" or filtered. T0547 319 :IESG 1zedA 310 :VEGG T0547 324 :FVAA 1zedA 315 :IDHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95581 # 2fn0A.319.230 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)A327 (2fn0A)G236 because Y (epsilon') conformation "forbidden" or filtered. T0547 319 :IESGRFVA 2fn0A 228 :RQEGREAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=95582 # 1ds1A.319.263 read from T0547.t06.many.frag # found chain 1ds1A in training set T0547 319 :IESGRFVAA 1ds1A 264 :LEPGDLLIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=95583 # 1rwrA.319.123 read from T0547.t06.many.frag # found chain 1rwrA in training set Warning: unaligning (T0547)E320 (1rwrA)T125 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1rwrA)N132 because D (zeta) conformation "forbidden" or filtered. T0547 319 :I 1rwrA 124 :L T0547 321 :SGRFVA 1rwrA 126 :TGRPSV Number of specific fragments extracted= 2 number of extra gaps= 2 total=95585 # 1u7nA.319.97 read from T0547.t06.many.frag # found chain 1u7nA in template set T0547 319 :IESGRFVAA 1u7nA 95 :FSAGNTGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=95586 # 2bmaA.319.256 read from T0547.t06.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)E320 (2bmaA)S236 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (2bmaA)G237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (2bmaA)S238 because G (3-10) conformation "forbidden" or filtered. T0547 319 :I 2bmaA 235 :V T0547 323 :RFVAA 2bmaA 239 :GNVAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95588 # 1vh4A.319.89 read from T0547.t06.many.frag # found chain 1vh4A in training set T0547 319 :IESGRFVAA 1vh4A 88 :FVDGRYVPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=95589 # 1yt8A.319.434 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)S321 (1yt8A)C437 because Y (epsilon') conformation "forbidden" or filtered. T0547 319 :IE 1yt8A 435 :LT T0547 322 :GRFVAA 1yt8A 438 :GSSLLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95591 # 1wkcA.319.106 read from T0547.t06.many.frag # found chain 1wkcA in training set T0547 319 :IESGRFVAA 1wkcA 107 :VVPGLAFDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=95592 # 1l5oA.319.172 read from T0547.t06.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)G322 (1l5oA)G176 because E (beta_S) conformation "forbidden" or filtered. T0547 319 :IES 1l5oA 173 :GEL T0547 323 :RFVAA 1l5oA 177 :MANTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=95594 # 1zpdA.319.385 read from T0547.t06.many.frag # found chain 1zpdA in template set Warning: unaligning (T0547)E320 (1zpdA)E387 because P (beta_P) conformation "forbidden" or filtered. T0547 319 :I 1zpdA 386 :A T0547 321 :SGRFVAA 1zpdA 388 :TGDSWFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=95596 # 1rcqA.319.206 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 319 :IESGRFVAA 1rcqA 207 :VRPGILLYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=95597 # 1kv7A.319.229 read from T0547.t06.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)E320 (1kv7A)S259 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1kv7A)E266 because Y (epsilon') conformation "forbidden" or filtered. T0547 319 :I 1kv7A 258 :A T0547 321 :SGRFVA 1kv7A 260 :DGGLLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=95599 # 1b43A.319.170 read from T0547.t06.many.frag # found chain 1b43A in template set Warning: unaligning (T0547)G322 (1b43A)Y173 because G (3-10) conformation "forbidden" or filtered. T0547 319 :IES 1b43A 170 :SQD T0547 323 :RFVAA 1b43A 174 :DSLLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=95601 # 1uvjA.319.449 read from T0547.t06.many.frag # found chain 1uvjA in template set Warning: unaligning (T0547)S321 (1uvjA)S452 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1uvjA)D453 because G (3-10) conformation "forbidden" or filtered. T0547 319 :IE 1uvjA 450 :SK T0547 323 :RFVAA 1uvjA 454 :DAMLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95603 # 1eybA.319.174 read from T0547.t06.many.frag # found chain 1eybA in template set Warning: unaligning (T0547)A327 (1eybA)V157 because D (zeta) conformation "forbidden" or filtered. T0547 319 :IESGRFVA 1eybA 149 :NSDGDFLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=95604 # 1r9jA.319.491 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 319 :IESGRFVAA 1r9jA 490 :RPSDQTETS Number of specific fragments extracted= 1 number of extra gaps= 0 total=95605 # 1y4wA.319.208 read from T0547.t06.many.frag # found chain 1y4wA in training set Warning: unaligning (T0547)E320 (1y4wA)E229 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1y4wA)P232 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)V325 (1y4wA)N234 because S (epsilon) conformation "forbidden" or filtered. T0547 319 :I 1y4wA 228 :S T0547 321 :SG 1y4wA 230 :FG T0547 324 :F 1y4wA 233 :Y T0547 326 :AA 1y4wA 235 :AQ Number of specific fragments extracted= 4 number of extra gaps= 3 total=95609 # 1xw8A.319.137 read from T0547.t06.many.frag # found chain 1xw8A in template set T0547 319 :IESGRFVAA 1xw8A 138 :GLAGSELIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=95610 # 2bpa1.319.21 read from T0547.t06.many.frag # found chain 2bpa1 in template set Warning: unaligning (T0547)I319 (2bpa1)G22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (2bpa1)G25 because G (3-10) conformation "forbidden" or filtered. T0547 320 :ES 2bpa1 23 :QI T0547 323 :RFVAA 2bpa1 26 :RLITI Number of specific fragments extracted= 2 number of extra gaps= 2 total=95612 # 1zhxA.319.218 read from T0547.t06.many.frag # found chain 1zhxA in training set T0547 319 :IESGRFVAA 1zhxA 215 :LEGKSYIQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=95613 # 1vlpA.319.362 read from T0547.t06.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)E320 (1vlpA)G352 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1vlpA)T358 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1vlpA)N359 because D (zeta) conformation "forbidden" or filtered. T0547 319 :I 1vlpA 351 :F T0547 321 :SGRFV 1vlpA 353 :IGTNF Number of specific fragments extracted= 2 number of extra gaps= 2 total=95615 # 1ogoX.319.269 read from T0547.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0547)E320 (1ogoX)A271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1ogoX)G278 because Y (epsilon') conformation "forbidden" or filtered. T0547 319 :I 1ogoX 270 :L T0547 321 :SGRFVA 1ogoX 272 :PGAYVK Number of specific fragments extracted= 2 number of extra gaps= 2 total=95617 # 1olzA.319.146 read from T0547.t06.many.frag # found chain 1olzA in template set T0547 319 :IESGRFVAA 1olzA 147 :MVDGELYSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=95618 # 2fgqX.319.165 read from T0547.t06.many.frag # found chain 2fgqX in training set Warning: unaligning (T0547)A326 (2fgqX)G173 because Y (epsilon') conformation "forbidden" or filtered. T0547 319 :IESGRFV 2fgqX 166 :DSVGRYI T0547 327 :A 2fgqX 174 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=95620 # 1lw7A.319.199 read from T0547.t06.many.frag # found chain 1lw7A in template set Warning: unaligning (T0547)E320 (1lw7A)E257 because P (beta_P) conformation "forbidden" or filtered. T0547 319 :I 1lw7A 256 :W T0547 321 :SGRFVAA 1lw7A 258 :YGREFVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=95622 # 1m1nA.319.351 read from T0547.t06.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)S321 (1m1nA)I355 because Y (epsilon') conformation "forbidden" or filtered. T0547 319 :IE 1m1nA 353 :LY T0547 322 :GRFVAA 1m1nA 356 :GGLRPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=95624 # 1knwA.320.267 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 320 :ESGRFVAAN 1knwA 268 :EPGRFLVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=95625 # 7odcA.320.273 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 320 :ESGRFVAAN 7odcA 274 :EPGRYYVAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=95626 # 2fn0A.320.231 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)S321 (2fn0A)E230 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (2fn0A)G236 because Y (epsilon') conformation "forbidden" or filtered. T0547 320 :E 2fn0A 229 :Q T0547 322 :GRFVA 2fn0A 231 :GREAL T0547 328 :N 2fn0A 237 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=95629 # 1jftA.320.243 read from T0547.t06.many.frag # found chain 1jftA in template set T0547 320 :ESGRFVAAN 1jftA 245 :CGGDIMAMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=95630 # 1ds1A.320.264 read from T0547.t06.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)E320 (1ds1A)E265 because E (beta_S) conformation "forbidden" or filtered. T0547 321 :SGRFVAAN 1ds1A 266 :PGDLLIVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=95631 # 1zbxB.320.10 read from T0547.t06.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)N328 (1zbxB)D498 because L (left) conformation "forbidden" or filtered. T0547 320 :ESGRFVAA 1zbxB 490 :VSPRFLVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=95632 # 1rwrA.320.124 read from T0547.t06.many.frag # found chain 1rwrA in training set Warning: unaligning (T0547)G322 (1rwrA)G127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1rwrA)N132 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1rwrA)G133 because S (epsilon) conformation "forbidden" or filtered. T0547 320 :ES 1rwrA 125 :TT T0547 323 :RFVA 1rwrA 128 :RPSV Number of specific fragments extracted= 2 number of extra gaps= 2 total=95634 # 1b43A.320.171 read from T0547.t06.many.frag # found chain 1b43A in template set Warning: unaligning (T0547)S321 (1b43A)D172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (1b43A)Y173 because G (3-10) conformation "forbidden" or filtered. T0547 320 :E 1b43A 171 :Q T0547 323 :RFVAAN 1b43A 174 :DSLLFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95636 # 1zedA.320.310 read from T0547.t06.many.frag # found chain 1zedA in training set T0547 320 :ESGRFVAAN 1zedA 311 :EGGRIDHGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=95637 # 1uvjA.320.450 read from T0547.t06.many.frag # found chain 1uvjA in template set Warning: unaligning (T0547)E320 (1uvjA)K451 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1uvjA)G458 because E (beta_S) conformation "forbidden" or filtered. T0547 321 :SGRFVA 1uvjA 452 :SDDAML T0547 328 :N 1uvjA 459 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=95639 # 2bmoA.320.298 read from T0547.t06.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)S321 (2bmoA)P300 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (2bmoA)L305 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. T0547 320 :E 2bmoA 299 :F T0547 322 :GRFV 2bmoA 301 :NNSF T0547 327 :A 2bmoA 306 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=95642 # 2bmaA.320.257 read from T0547.t06.many.frag # found chain 2bmaA in template set T0547 320 :ESGRFVAAN 2bmaA 236 :SGSGNVALY Number of specific fragments extracted= 1 number of extra gaps= 0 total=95643 # 1l5oA.320.173 read from T0547.t06.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)F324 (1l5oA)A178 because T (delta_L) conformation "forbidden" or filtered. T0547 320 :ESGR 1l5oA 174 :ELGM T0547 325 :VAAN 1l5oA 179 :NTTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=95645 # 1xruA.320.43 read from T0547.t06.many.frag # found chain 1xruA in template set Warning: unaligning (T0547)R323 (1xruA)R44 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1xruA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 320 :ESG 1xruA 41 :HID T0547 324 :FVA 1xruA 45 :IIV T0547 328 :N 1xruA 49 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=95648 # 2fgqX.320.166 read from T0547.t06.many.frag # found chain 2fgqX in training set Warning: unaligning (T0547)S321 (2fgqX)V168 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (2fgqX)R170 because P (beta_P) conformation "forbidden" or filtered. T0547 320 :E 2fgqX 167 :S T0547 322 :G 2fgqX 169 :G T0547 324 :FVAAN 2fgqX 171 :YIGGY Number of specific fragments extracted= 3 number of extra gaps= 2 total=95651 # 1eybA.320.175 read from T0547.t06.many.frag # found chain 1eybA in template set Warning: unaligning (T0547)A327 (1eybA)V157 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1eybA)P158 because P (beta_P) conformation "forbidden" or filtered. T0547 320 :ESGRFVA 1eybA 150 :SDGDFLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=95652 # 1kjqA.320.186 read from T0547.t06.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)E320 (1kjqA)G188 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1kjqA)G196 because P (beta_P) conformation "forbidden" or filtered. T0547 321 :SGRFVAA 1kjqA 189 :AGRVIVE Number of specific fragments extracted= 1 number of extra gaps= 2 total=95653 # 1yt8A.320.435 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)E320 (1yt8A)T436 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S321 (1yt8A)C437 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1yt8A)S440 because T (delta_L) conformation "forbidden" or filtered. T0547 322 :GR 1yt8A 438 :GS T0547 325 :VAAN 1yt8A 441 :LLAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=95655 # 1wkcA.320.107 read from T0547.t06.many.frag # found chain 1wkcA in training set T0547 320 :ESGRFVAAN 1wkcA 108 :VPGLAFDRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=95656 # 2bpa1.320.22 read from T0547.t06.many.frag # found chain 2bpa1 in template set Warning: unaligning (T0547)A327 (2bpa1)I30 because G (3-10) conformation "forbidden" or filtered. T0547 320 :ESGRFVA 2bpa1 23 :QIGRLIT T0547 328 :N 2bpa1 31 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=95658 # 1n8yC.320.409 read from T0547.t06.many.frag # found chain 1n8yC in template set Warning: unaligning (T0547)E320 because of BadResidue code BAD_PEPTIDE at template residue (1n8yC)I410 Warning: unaligning (T0547)A327 (1n8yC)D417 because L (left) conformation "forbidden" or filtered. T0547 321 :SGRFVA 1n8yC 411 :RGRILH T0547 328 :N 1n8yC 418 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=95660 # 1gq8A.320.153 read from T0547.t06.many.frag # found chain 1gq8A in training set Warning: unaligning (T0547)E320 (1gq8A)G154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1gq8A)D157 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1gq8A)G161 because S (epsilon) conformation "forbidden" or filtered. T0547 321 :SG 1gq8A 155 :TV T0547 324 :FVA 1gq8A 158 :FIF T0547 328 :N 1gq8A 162 :N Number of specific fragments extracted= 3 number of extra gaps= 3 total=95663 # 1zc6A.320.127 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)V325 (1zc6A)S133 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1zc6A)I134 because Y (epsilon') conformation "forbidden" or filtered. T0547 320 :ESGRF 1zc6A 128 :ALGTG T0547 327 :AN 1zc6A 135 :GE Number of specific fragments extracted= 2 number of extra gaps= 1 total=95665 1m4zA expands to /projects/compbio/data/pdb/1m4z.pdb.gz 1m4zA:# 1m4zA.320.53 read from T0547.t06.many.frag # adding 1m4zA to template set # found chain 1m4zA in template set T0547 320 :ESGRFVAAN 1m4zA 51 :GRGDSVVMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=95666 # 1t9hA.320.222 read from T0547.t06.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)A326 (1t9hA)A220 because P (beta_P) conformation "forbidden" or filtered. T0547 320 :ESGRFV 1t9hA 214 :TSGGLV T0547 327 :AN 1t9hA 221 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=95668 # 1tzlA.320.349 read from T0547.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)S321 (1tzlA)L352 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1tzlA)Y355 because L (left) conformation "forbidden" or filtered. T0547 320 :E 1tzlA 351 :S T0547 322 :GR 1tzlA 353 :GS T0547 325 :VAAN 1tzlA 356 :ITEQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=95671 # 1tca.320.103 read from T0547.t06.many.frag # found chain 1tca in training set T0547 320 :ESGRFVAAN 1tca 104 :WSQGGLVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=95672 # 2bmoA.320.299 read from T0547.t06.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)E320 (2bmoA)P300 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 T0547 321 :SGRFVA 2bmoA 301 :NNSFLT Number of specific fragments extracted= 1 number of extra gaps= 2 total=95673 # 2ae0X.320.251 read from T0547.t06.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)R323 (2ae0X)R255 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (2ae0X)S260 because Y (epsilon') conformation "forbidden" or filtered. T0547 320 :ESG 2ae0X 252 :LVG T0547 324 :FVAA 2ae0X 256 :ASVA Number of specific fragments extracted= 2 number of extra gaps= 2 total=95675 # 1xv2A.320.51 read from T0547.t06.many.frag # found chain 1xv2A in template set Warning: unaligning (T0547)S321 (1xv2A)D50 because L (left) conformation "forbidden" or filtered. T0547 320 :E 1xv2A 49 :L T0547 322 :GRFVAAN 1xv2A 51 :GKAYHAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=95677 # 1knwA.321.268 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 321 :SGRFVAANH 1knwA 269 :PGRFLVAQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=95678 # 7odcA.321.274 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 321 :SGRFVAANH 7odcA 275 :PGRYYVASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=95679 # 2fn0A.321.232 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)S321 (2fn0A)E230 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (2fn0A)G236 because Y (epsilon') conformation "forbidden" or filtered. T0547 322 :GRFVA 2fn0A 231 :GREAL T0547 328 :NH 2fn0A 237 :FS Number of specific fragments extracted= 2 number of extra gaps= 2 total=95681 # 1ds1A.321.265 read from T0547.t06.many.frag # found chain 1ds1A in training set T0547 321 :SGRFVAANH 1ds1A 266 :PGDLLIVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=95682 # 1u8xX.321.216 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)G322 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)R196 Warning: unaligning (T0547)R323 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)R196 Warning: unaligning (T0547)A326 (1u8xX)G199 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1u8xX)H202 because L (left) conformation "forbidden" or filtered. T0547 321 :S 1u8xX 194 :K T0547 324 :FV 1u8xX 197 :YY T0547 327 :AN 1u8xX 200 :LN Number of specific fragments extracted= 3 number of extra gaps= 3 total=95685 # 1jftA.321.244 read from T0547.t06.many.frag # found chain 1jftA in template set T0547 321 :SGRFVAANH 1jftA 246 :GGDIMAMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=95686 # 2bmoA.321.299 read from T0547.t06.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)S321 (2bmoA)P300 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)G322 (2bmoA)N301 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (2bmoA)T306 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 T0547 323 :RFVA 2bmoA 302 :NSFL Number of specific fragments extracted= 1 number of extra gaps= 2 total=95687 # 1zbxB.321.11 read from T0547.t06.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)N328 (1zbxB)D498 because L (left) conformation "forbidden" or filtered. T0547 321 :SGRFVAA 1zbxB 491 :SPRFLVA T0547 329 :H 1zbxB 499 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=95689 # 1b43A.321.172 read from T0547.t06.many.frag # found chain 1b43A in template set Warning: unaligning (T0547)N328 (1b43A)G179 because T (delta_L) conformation "forbidden" or filtered. T0547 321 :SGRFVAA 1b43A 172 :DYDSLLF T0547 329 :H 1b43A 180 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=95691 # 2bmoA.321.300 read from T0547.t06.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)A327 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 321 :SGRFVA 2bmoA 301 :NNSFLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=95692 # 1gq8A.321.154 read from T0547.t06.many.frag # found chain 1gq8A in training set Warning: unaligning (T0547)G322 (1gq8A)V156 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1gq8A)D157 because L (left) conformation "forbidden" or filtered. T0547 321 :S 1gq8A 155 :T T0547 324 :FVAANH 1gq8A 158 :FIFGNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95694 # 2fgqX.321.167 read from T0547.t06.many.frag # found chain 2fgqX in training set Warning: unaligning (T0547)R323 (2fgqX)R170 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (2fgqX)G173 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (2fgqX)G174 because Y (epsilon') conformation "forbidden" or filtered. T0547 321 :SG 2fgqX 168 :VG T0547 324 :FV 2fgqX 171 :YI T0547 328 :NH 2fgqX 175 :YV Number of specific fragments extracted= 3 number of extra gaps= 2 total=95697 # 1tzlA.321.350 read from T0547.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)F324 (1tzlA)Y355 because L (left) conformation "forbidden" or filtered. T0547 321 :SGR 1tzlA 352 :LGS T0547 325 :VAANH 1tzlA 356 :ITEQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=95699 # 1eybA.321.176 read from T0547.t06.many.frag # found chain 1eybA in template set Warning: unaligning (T0547)A327 (1eybA)V157 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1eybA)P158 because P (beta_P) conformation "forbidden" or filtered. T0547 321 :SGRFVA 1eybA 151 :DGDFLI T0547 329 :H 1eybA 159 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=95701 # 1n8yC.321.410 read from T0547.t06.many.frag # found chain 1n8yC in template set Warning: unaligning (T0547)A327 (1n8yC)D417 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1n8yC)A419 because G (3-10) conformation "forbidden" or filtered. T0547 321 :SGRFVA 1n8yC 411 :RGRILH T0547 328 :N 1n8yC 418 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=95703 # 2c8mA.321.74 read from T0547.t06.many.frag # found chain 2c8mA in template set T0547 321 :SGRFVAANH 2c8mA 75 :GGGAVYHDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=95704 # 1uvjA.321.451 read from T0547.t06.many.frag # found chain 1uvjA in template set Warning: unaligning (T0547)G322 (1uvjA)D453 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1uvjA)G458 because E (beta_S) conformation "forbidden" or filtered. T0547 321 :S 1uvjA 452 :S T0547 323 :RFVA 1uvjA 454 :DAML T0547 328 :NH 1uvjA 459 :WT Number of specific fragments extracted= 3 number of extra gaps= 2 total=95707 # 2bmaA.321.258 read from T0547.t06.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)S321 (2bmaA)G237 because Y (epsilon') conformation "forbidden" or filtered. T0547 322 :GRFVAANH 2bmaA 238 :SGNVALYC Number of specific fragments extracted= 1 number of extra gaps= 1 total=95708 # 1xruA.321.44 read from T0547.t06.many.frag # found chain 1xruA in template set Warning: unaligning (T0547)R323 (1xruA)R44 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1xruA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 321 :SG 1xruA 42 :ID T0547 324 :FVA 1xruA 45 :IIV T0547 328 :NH 1xruA 49 :GI Number of specific fragments extracted= 3 number of extra gaps= 2 total=95711 # 1v0wA.321.166 read from T0547.t06.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)S321 because of BadResidue code BAD_PEPTIDE at template residue (1v0wA)H170 Warning: unaligning (T0547)H329 (1v0wA)G178 because T (delta_L) conformation "forbidden" or filtered. T0547 322 :GRFVAAN 1v0wA 171 :SKILVVD Number of specific fragments extracted= 1 number of extra gaps= 2 total=95712 # 1a12A.321.233 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)R323 (1a12A)D244 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 because of BadResidue code BAD_PEPTIDE in next template residue (1a12A)G248 Warning: unaligning (T0547)A327 because of BadResidue code BAD_PEPTIDE at template residue (1a12A)G248 T0547 321 :SG 1a12A 242 :FQ T0547 324 :FV 1a12A 245 :AF T0547 328 :NH 1a12A 249 :AY Number of specific fragments extracted= 3 number of extra gaps= 2 total=95715 # 1m4zA.321.54 read from T0547.t06.many.frag # found chain 1m4zA in template set T0547 321 :SGRFVAANH 1m4zA 52 :RGDSVVMHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=95716 # 1vkdA.321.228 read from T0547.t06.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)G322 (1vkdA)Y218 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1vkdA)P219 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1vkdA)G225 because S (epsilon) conformation "forbidden" or filtered. T0547 321 :S 1vkdA 217 :P T0547 324 :FVAAN 1vkdA 220 :IETSE Number of specific fragments extracted= 2 number of extra gaps= 2 total=95718 # 2bpa1.321.23 read from T0547.t06.many.frag # found chain 2bpa1 in template set T0547 321 :SGRFVAANH 2bpa1 24 :IGRLITIST Number of specific fragments extracted= 1 number of extra gaps= 0 total=95719 # 2ae0X.321.252 read from T0547.t06.many.frag # found chain 2ae0X in template set T0547 321 :SGRFVAANH 2ae0X 253 :VGRASVASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=95720 # 1zhxA.321.220 read from T0547.t06.many.frag # found chain 1zhxA in training set T0547 321 :SGRFVAANH 1zhxA 217 :GKSYIQSST Number of specific fragments extracted= 1 number of extra gaps= 0 total=95721 # 1tca.321.104 read from T0547.t06.many.frag # found chain 1tca in training set T0547 321 :SGRFVAANH 1tca 105 :SQGGLVAQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=95722 # 1e7uA.321.815 read from T0547.t06.many.frag # found chain 1e7uA in template set Warning: unaligning (T0547)A327 (1e7uA)I963 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1e7uA)D964 because L (left) conformation "forbidden" or filtered. T0547 321 :SGRFVA 1e7uA 957 :TGNLFH T0547 329 :H 1e7uA 965 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=95724 # 1h4aX.321.31 read from T0547.t06.many.frag # found chain 1h4aX in training set Warning: unaligning (T0547)G322 (1h4aX)N33 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R323 (1h4aX)S34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1h4aX)S39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1h4aX)G40 because S (epsilon) conformation "forbidden" or filtered. T0547 321 :S 1h4aX 32 :C T0547 324 :FVAA 1h4aX 35 :ARVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=95726 # 1l5oA.321.174 read from T0547.t06.many.frag # found chain 1l5oA in training set Warning: unaligning (T0547)R323 (1l5oA)M177 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (1l5oA)A178 because T (delta_L) conformation "forbidden" or filtered. T0547 321 :SG 1l5oA 175 :LG T0547 325 :VAANH 1l5oA 179 :NTTPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95728 # 1knwA.322.269 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 322 :GRFVAANHA 1knwA 270 :GRFLVAQSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=95729 # 7odcA.322.275 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 322 :GRFVAANHA 7odcA 276 :GRYYVASAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=95730 # 1u8xX.322.217 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)G322 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)R196 Warning: unaligning (T0547)R323 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)R196 Warning: unaligning (T0547)N328 (1u8xX)N201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. T0547 324 :FVAA 1u8xX 197 :YYGL T0547 329 :H 1u8xX 202 :H Number of specific fragments extracted= 2 number of extra gaps= 3 total=95732 # 1gq8A.322.155 read from T0547.t06.many.frag # found chain 1gq8A in training set Warning: unaligning (T0547)R323 (1gq8A)D157 because L (left) conformation "forbidden" or filtered. T0547 322 :G 1gq8A 156 :V T0547 324 :FVAANHA 1gq8A 158 :FIFGNAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95734 # 1zbxB.322.12 read from T0547.t06.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)N328 (1zbxB)D498 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1zbxB)G499 because T (delta_L) conformation "forbidden" or filtered. T0547 322 :GRFVAA 1zbxB 492 :PRFLVA T0547 330 :A 1zbxB 500 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=95736 # 2fn0A.322.233 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)A327 (2fn0A)G236 because Y (epsilon') conformation "forbidden" or filtered. T0547 322 :GRFVA 2fn0A 231 :GREAL T0547 328 :NHA 2fn0A 237 :FSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=95738 # 1ds1A.322.266 read from T0547.t06.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)A327 (1ds1A)V272 because P (beta_P) conformation "forbidden" or filtered. T0547 322 :GRFVA 1ds1A 267 :GDLLI T0547 328 :NHA 1ds1A 273 :DNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=95740 # 2bmoA.322.301 read from T0547.t06.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)G322 (2bmoA)N302 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F324 (2bmoA)F304 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 323 :R 2bmoA 303 :S T0547 325 :VA 2bmoA 305 :LT T0547 330 :A 2bmoA 310 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=95743 # 2c8mA.322.75 read from T0547.t06.many.frag # found chain 2c8mA in template set Warning: unaligning (T0547)N328 (2c8mA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0547 322 :GRFVAA 2c8mA 76 :GGAVYH T0547 329 :HA 2c8mA 83 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95745 # 1a12A.322.234 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)R323 (1a12A)D244 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 because of BadResidue code BAD_PEPTIDE in next template residue (1a12A)G248 Warning: unaligning (T0547)A327 because of BadResidue code BAD_PEPTIDE at template residue (1a12A)G248 T0547 322 :G 1a12A 243 :Q T0547 324 :FV 1a12A 245 :AF T0547 328 :NHA 1a12A 249 :AYF Number of specific fragments extracted= 3 number of extra gaps= 2 total=95748 # 2bmoA.322.300 read from T0547.t06.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)G322 (2bmoA)N301 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 323 :RFVAA 2bmoA 302 :NSFLT Number of specific fragments extracted= 1 number of extra gaps= 2 total=95749 # 1b43A.322.173 read from T0547.t06.many.frag # found chain 1b43A in template set Warning: unaligning (T0547)H329 (1b43A)A180 because P (beta_P) conformation "forbidden" or filtered. T0547 322 :GRFVAAN 1b43A 173 :YDSLLFG T0547 330 :A 1b43A 181 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=95751 # 1vkdA.322.229 read from T0547.t06.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)H329 (1vkdA)G225 because S (epsilon) conformation "forbidden" or filtered. T0547 322 :GRFVAAN 1vkdA 218 :YPIETSE T0547 330 :A 1vkdA 226 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=95753 # 1jftA.322.245 read from T0547.t06.many.frag # found chain 1jftA in template set T0547 322 :GRFVAANHA 1jftA 247 :GDIMAMGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=95754 # 1y2qA.322.0 read from T0547.t06.many.frag # found chain 1y2qA in template set Warning: unaligning (T0547)G322 because first residue in template chain is (1y2qA)M1 Warning: unaligning (T0547)A326 (1y2qA)L5 because E (beta_S) conformation "forbidden" or filtered. T0547 323 :RFV 1y2qA 2 :RVL T0547 327 :ANHA 1y2qA 6 :IHSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=95756 # 1ds1A.322.267 read from T0547.t06.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)N328 (1ds1A)N274 because G (3-10) conformation "forbidden" or filtered. T0547 322 :GRFVAA 1ds1A 268 :DLLIVD T0547 329 :HA 1ds1A 275 :FR Number of specific fragments extracted= 2 number of extra gaps= 1 total=95758 # 1v0wA.322.167 read from T0547.t06.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)G322 (1v0wA)S171 because P (beta_P) conformation "forbidden" or filtered. T0547 323 :RFVAANHA 1v0wA 172 :KILVVDGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=95759 # 1n8yC.322.411 read from T0547.t06.many.frag # found chain 1n8yC in template set Warning: unaligning (T0547)A327 (1n8yC)D417 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1n8yC)G418 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1n8yC)A419 because G (3-10) conformation "forbidden" or filtered. T0547 322 :GRFVA 1n8yC 412 :GRILH T0547 330 :A 1n8yC 420 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=95761 # 1xruA.322.45 read from T0547.t06.many.frag # found chain 1xruA in template set Warning: unaligning (T0547)A330 (1xruA)M51 because D (zeta) conformation "forbidden" or filtered. T0547 322 :GRFVAANH 1xruA 43 :DRIIVGGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=95762 # 1t9hA.322.224 read from T0547.t06.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)R323 (1t9hA)G217 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1t9hA)G224 because P (beta_P) conformation "forbidden" or filtered. T0547 322 :G 1t9hA 216 :G T0547 324 :FVAANH 1t9hA 218 :LVADTP Number of specific fragments extracted= 2 number of extra gaps= 2 total=95764 # 1tzlA.322.351 read from T0547.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)A327 (1tzlA)E358 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1tzlA)L361 because E (beta_S) conformation "forbidden" or filtered. T0547 322 :GRFVA 1tzlA 353 :GSYIT T0547 328 :NH 1tzlA 359 :QS Number of specific fragments extracted= 2 number of extra gaps= 2 total=95766 # 2axtO.322.36 read from T0547.t06.many.frag # found chain 2axtO in template set T0547 322 :GRFVAANHA 2axtO 62 :QTYRIARLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=95767 # 1yqyA.322.259 read from T0547.t06.many.frag # found chain 1yqyA in template set Warning: unaligning (T0547)A326 (1yqyA)L521 because P (beta_P) conformation "forbidden" or filtered. T0547 322 :GRFV 1yqyA 517 :GKLI T0547 327 :ANHA 1yqyA 522 :QRNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=95769 # 1eybA.322.177 read from T0547.t06.many.frag # found chain 1eybA in template set Warning: unaligning (T0547)A327 (1eybA)V157 because D (zeta) conformation "forbidden" or filtered. T0547 322 :GRFVA 1eybA 152 :GDFLI T0547 328 :NHA 1eybA 158 :PQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=95771 # 1wckA.322.123 read from T0547.t06.many.frag # found chain 1wckA in training set T0547 322 :GRFVAANHA 1wckA 124 :DTFVISETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=95772 # 1h4aX.322.32 read from T0547.t06.many.frag # found chain 1h4aX in training set Warning: unaligning (T0547)R323 (1h4aX)S34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1h4aX)S39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1h4aX)G40 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1h4aX)C41 because E (beta_S) conformation "forbidden" or filtered. T0547 322 :G 1h4aX 33 :N T0547 324 :FVAA 1h4aX 35 :ARVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=95774 # 1zhxA.322.221 read from T0547.t06.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)G322 (1zhxA)K218 because E (beta_S) conformation "forbidden" or filtered. T0547 323 :RFVAANHA 1zhxA 219 :SYIQSSTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=95775 # 2fgqX.322.168 read from T0547.t06.many.frag # found chain 2fgqX in training set Warning: unaligning (T0547)A326 (2fgqX)G173 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (2fgqX)G174 because Y (epsilon') conformation "forbidden" or filtered. T0547 322 :GRFV 2fgqX 169 :GRYI T0547 328 :NHA 2fgqX 175 :YVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95777 # 1oewA.322.80 read from T0547.t06.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)A326 (1oewA)S85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1oewA)T90 T0547 322 :GRFV 1oewA 81 :GSSS T0547 327 :ANH 1oewA 86 :GDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=95779 # 1yt5A.322.112 read from T0547.t06.many.frag # found chain 1yt5A in template set T0547 322 :GRFVAANHA 1yt5A 113 :GNHLALNDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=95780 # 1knwA.323.270 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 323 :RFVAANHAV 1knwA 271 :RFLVAQSGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=95781 # 7odcA.323.276 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 323 :RFVAANHAV 7odcA 277 :RYYVASAFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=95782 # 1u8xX.323.218 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)R323 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)R196 Warning: unaligning (T0547)A326 (1u8xX)G199 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1u8xX)H202 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. T0547 324 :FV 1u8xX 197 :YY T0547 327 :AN 1u8xX 200 :LN T0547 331 :V 1u8xX 204 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=95785 # 1gq8A.323.156 read from T0547.t06.many.frag # found chain 1gq8A in training set Warning: unaligning (T0547)R323 (1gq8A)D157 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1gq8A)G161 because S (epsilon) conformation "forbidden" or filtered. T0547 324 :FVA 1gq8A 158 :FIF T0547 328 :NHAV 1gq8A 162 :NAAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=95787 # 2c8mA.323.76 read from T0547.t06.many.frag # found chain 2c8mA in template set Warning: unaligning (T0547)N328 (2c8mA)D82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (2c8mA)G84 because G (3-10) conformation "forbidden" or filtered. T0547 323 :RFVAA 2c8mA 77 :GAVYH T0547 329 :H 2c8mA 83 :L T0547 331 :V 2c8mA 85 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=95790 # 2fn0A.323.234 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)A327 (2fn0A)G236 because Y (epsilon') conformation "forbidden" or filtered. T0547 323 :RFVA 2fn0A 232 :REAL T0547 328 :NHAV 2fn0A 237 :FSPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=95792 # 1zbxB.323.13 read from T0547.t06.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)H329 (1zbxB)G499 because T (delta_L) conformation "forbidden" or filtered. T0547 323 :RFVAAN 1zbxB 493 :RFLVAD T0547 330 :AV 1zbxB 500 :FL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95794 # 1b43A.323.174 read from T0547.t06.many.frag # found chain 1b43A in template set T0547 323 :RFVAANHAV 1b43A 174 :DSLLFGAPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=95795 # 1a12A.323.235 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)R323 (1a12A)D244 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 because of BadResidue code BAD_PEPTIDE in next template residue (1a12A)G248 Warning: unaligning (T0547)A327 because of BadResidue code BAD_PEPTIDE at template residue (1a12A)G248 T0547 324 :FV 1a12A 245 :AF T0547 328 :NHAV 1a12A 249 :AYFT Number of specific fragments extracted= 2 number of extra gaps= 2 total=95797 # 1wckA.323.124 read from T0547.t06.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A326 (1wckA)I128 because E (beta_S) conformation "forbidden" or filtered. T0547 323 :RFV 1wckA 125 :TFV T0547 327 :ANHAV 1wckA 129 :SETGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=95799 # 1y2qA.323.1 read from T0547.t06.many.frag # found chain 1y2qA in template set Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1y2qA)I11 T0547 323 :RFVAANHA 1y2qA 2 :RVLLIHSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=95800 # 2bmoA.323.302 read from T0547.t06.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)F324 (2bmoA)F304 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 323 :R 2bmoA 303 :S T0547 325 :VAA 2bmoA 305 :LTG T0547 330 :AV 2bmoA 310 :AF Number of specific fragments extracted= 3 number of extra gaps= 2 total=95803 # 1vkdA.323.230 read from T0547.t06.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)H329 (1vkdA)G225 because S (epsilon) conformation "forbidden" or filtered. T0547 323 :RFVAAN 1vkdA 219 :PIETSE T0547 330 :AV 1vkdA 226 :WL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95805 # 2axtO.323.37 read from T0547.t06.many.frag # found chain 2axtO in template set T0547 323 :RFVAANHAV 2axtO 63 :TYRIARLCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=95806 # 1si6X.323.76 read from T0547.t06.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)A327 (1si6X)T81 because Y (epsilon') conformation "forbidden" or filtered. T0547 323 :RFVA 1si6X 77 :KNTI T0547 328 :NHAV 1si6X 82 :ETMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95808 # 1ds1A.323.267 read from T0547.t06.many.frag # found chain 1ds1A in training set T0547 323 :RFVAANHAV 1ds1A 268 :DLLIVDNFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=95809 # 2bmoA.323.301 read from T0547.t06.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)N328 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 323 :RFVAA 2bmoA 302 :NSFLT T0547 331 :V 2bmoA 310 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=95811 # 1v0wA.323.168 read from T0547.t06.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)N328 (1v0wA)D177 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1v0wA)G178 because T (delta_L) conformation "forbidden" or filtered. T0547 323 :RFVAA 1v0wA 172 :KILVV T0547 330 :AV 1v0wA 179 :QS Number of specific fragments extracted= 2 number of extra gaps= 1 total=95813 # 1tzlA.323.352 read from T0547.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)F324 (1tzlA)Y355 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1tzlA)E358 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1tzlA)S360 because P (beta_P) conformation "forbidden" or filtered. T0547 323 :R 1tzlA 354 :S T0547 325 :VA 1tzlA 356 :IT T0547 328 :N 1tzlA 359 :Q T0547 330 :AV 1tzlA 361 :LV Number of specific fragments extracted= 4 number of extra gaps= 3 total=95817 # 1h4aX.323.33 read from T0547.t06.many.frag # found chain 1h4aX in training set Warning: unaligning (T0547)R323 (1h4aX)S34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1h4aX)S39 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FVAA 1h4aX 35 :ARVD T0547 329 :HAV 1h4aX 40 :GCW Number of specific fragments extracted= 2 number of extra gaps= 2 total=95819 # 1ds1A.323.268 read from T0547.t06.many.frag # found chain 1ds1A in training set T0547 323 :RFVAANHAV 1ds1A 269 :LLIVDNFRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=95820 # 1n8yC.323.412 read from T0547.t06.many.frag # found chain 1n8yC in template set Warning: unaligning (T0547)N328 (1n8yC)G418 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1n8yC)A419 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 (1n8yC)S421 because G (3-10) conformation "forbidden" or filtered. T0547 323 :RFVAA 1n8yC 413 :RILHD T0547 330 :A 1n8yC 420 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=95822 # 1k47A.323.293 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)R323 (1k47A)G292 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)V325 (1k47A)G294 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A326 (1k47A)G295 because T (delta_L) conformation "forbidden" or filtered. T0547 324 :F 1k47A 293 :A T0547 327 :ANHAV 1k47A 296 :GDCGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=95824 # 1yqyA.323.260 read from T0547.t06.many.frag # found chain 1yqyA in template set Warning: unaligning (T0547)H329 (1yqyA)N524 because L (left) conformation "forbidden" or filtered. T0547 323 :RFVAAN 1yqyA 518 :KLILQR T0547 330 :AV 1yqyA 525 :IG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95826 # 1t9hA.323.225 read from T0547.t06.many.frag # found chain 1t9hA in training set Warning: unaligning (T0547)R323 (1t9hA)G217 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 (1t9hA)F225 because L (left) conformation "forbidden" or filtered. T0547 324 :FVAANHA 1t9hA 218 :LVADTPG Number of specific fragments extracted= 1 number of extra gaps= 2 total=95827 # 1yt5A.323.113 read from T0547.t06.many.frag # found chain 1yt5A in template set Warning: unaligning (T0547)H329 (1yt5A)D120 because Y (epsilon') conformation "forbidden" or filtered. T0547 323 :RFVAAN 1yt5A 114 :NHLALN T0547 330 :AV 1yt5A 121 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=95829 # 1kqfA.323.616 read from T0547.t06.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)A330 (1kqfA)G624 because Y (epsilon') conformation "forbidden" or filtered. T0547 323 :RFVAANH 1kqfA 617 :TCFAEED T0547 331 :V 1kqfA 625 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=95831 # 1zhxA.323.222 read from T0547.t06.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)A330 (1zhxA)G226 because T (delta_L) conformation "forbidden" or filtered. T0547 323 :RFVAANH 1zhxA 219 :SYIQSST T0547 331 :V 1zhxA 227 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=95833 # 1oewA.323.81 read from T0547.t06.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)A326 (1oewA)S85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1oewA)T90 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1oewA)T90 T0547 323 :RFV 1oewA 82 :SSS T0547 327 :ANH 1oewA 86 :GDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=95835 # 1xruA.323.46 read from T0547.t06.many.frag # found chain 1xruA in template set Warning: unaligning (T0547)A330 (1xruA)M51 because D (zeta) conformation "forbidden" or filtered. T0547 323 :RFVAANH 1xruA 44 :RIIVGGI T0547 331 :V 1xruA 52 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=95837 # 1knwA.324.271 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A330 (1knwA)G278 because E (beta_S) conformation "forbidden" or filtered. T0547 324 :FVAANH 1knwA 272 :FLVAQS T0547 331 :VL 1knwA 279 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95839 # 7odcA.324.277 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 324 :FVAANHAVL 7odcA 278 :YYVASAFTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=95840 # 1u8xX.324.219 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)A326 (1u8xX)G199 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1u8xX)L200 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 (1u8xX)G204 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FV 1u8xX 197 :YY T0547 328 :NH 1u8xX 201 :NH T0547 332 :L 1u8xX 205 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=95843 # 1gq8A.324.157 read from T0547.t06.many.frag # found chain 1gq8A in training set T0547 324 :FVAANHAVL 1gq8A 158 :FIFGNAAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=95844 # 2c8mA.324.77 read from T0547.t06.many.frag # found chain 2c8mA in template set Warning: unaligning (T0547)N328 (2c8mA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FVAA 2c8mA 78 :AVYH T0547 329 :HAVL 2c8mA 83 :LGDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95846 # 1b43A.324.175 read from T0547.t06.many.frag # found chain 1b43A in template set T0547 324 :FVAANHAVL 1b43A 175 :SLLFGAPRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=95847 # 1y2qA.324.2 read from T0547.t06.many.frag # found chain 1y2qA in template set Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1y2qA)I11 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1y2qA)I11 T0547 324 :FVAANHA 1y2qA 3 :VLLIHSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=95848 # 2fn0A.324.235 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)A327 (2fn0A)G236 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 (2fn0A)E240 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FVA 2fn0A 233 :EAL T0547 328 :NHA 2fn0A 237 :FSP T0547 332 :L 2fn0A 241 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=95851 # 1wckA.324.125 read from T0547.t06.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FVAANH 1wckA 126 :FVISET T0547 331 :VL 1wckA 133 :FY Number of specific fragments extracted= 2 number of extra gaps= 1 total=95853 # 2bmoA.324.303 read from T0547.t06.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)A327 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 324 :FVA 2bmoA 304 :FLT T0547 330 :AVL 2bmoA 310 :AFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=95855 # 1a12A.324.236 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)A326 because of BadResidue code BAD_PEPTIDE in next template residue (1a12A)G248 Warning: unaligning (T0547)A327 because of BadResidue code BAD_PEPTIDE at template residue (1a12A)G248 T0547 324 :FV 1a12A 245 :AF T0547 328 :NHAVL 1a12A 249 :AYFTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=95857 # 1si6X.324.77 read from T0547.t06.many.frag # found chain 1si6X in training set T0547 324 :FVAANHAVL 1si6X 78 :NTITETMGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=95858 # 1k47A.324.294 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)A326 (1k47A)G295 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1k47A)G296 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1k47A)D297 because S (epsilon) conformation "forbidden" or filtered. T0547 324 :FV 1k47A 293 :AG T0547 329 :HAVL 1k47A 298 :CGIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95860 # 1vkdA.324.231 read from T0547.t06.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)H329 (1vkdA)G225 because S (epsilon) conformation "forbidden" or filtered. T0547 324 :FVAAN 1vkdA 220 :IETSE T0547 330 :AVL 1vkdA 226 :WLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95862 # 1tzlA.324.353 read from T0547.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)F324 (1tzlA)Y355 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)C364 T0547 325 :VAANHAV 1tzlA 356 :ITEQSLV Number of specific fragments extracted= 1 number of extra gaps= 2 total=95863 # 2axtO.324.38 read from T0547.t06.many.frag # found chain 2axtO in template set T0547 324 :FVAANHAVL 2axtO 64 :YRIARLCLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=95864 # 1zbxB.324.14 read from T0547.t06.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)H329 (1zbxB)G499 because T (delta_L) conformation "forbidden" or filtered. T0547 324 :FVAAN 1zbxB 494 :FLVAD T0547 330 :AVL 1zbxB 500 :FLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=95866 # 1n8yC.324.413 read from T0547.t06.many.frag # found chain 1n8yC in template set Warning: unaligning (T0547)N328 (1n8yC)G418 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 (1n8yC)S421 because G (3-10) conformation "forbidden" or filtered. T0547 324 :FVAA 1n8yC 414 :ILHD T0547 329 :HA 1n8yC 419 :AY T0547 332 :L 1n8yC 422 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=95869 # 1uc2A.324.197 read from T0547.t06.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)A326 (1uc2A)S200 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1uc2A)G201 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FV 1uc2A 198 :LG T0547 328 :NH 1uc2A 202 :NH T0547 331 :VL 1uc2A 205 :LE Number of specific fragments extracted= 3 number of extra gaps= 2 total=95872 # 1h4aX.324.34 read from T0547.t06.many.frag # found chain 1h4aX in training set T0547 324 :FVAANHAVL 1h4aX 35 :ARVDSGCWM Number of specific fragments extracted= 1 number of extra gaps= 0 total=95873 # 1v0wA.324.169 read from T0547.t06.many.frag # found chain 1v0wA in training set Warning: unaligning (T0547)A326 (1v0wA)V175 because E (beta_S) conformation "forbidden" or filtered. T0547 324 :FV 1v0wA 173 :IL T0547 327 :ANHAVL 1v0wA 176 :VDGQSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95875 # 1oewA.324.82 read from T0547.t06.many.frag # found chain 1oewA in training set Warning: unaligning (T0547)A327 (1oewA)G86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE in next template residue (1oewA)T90 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1oewA)T90 Warning: unaligning (T0547)L332 (1oewA)D91 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FVA 1oewA 83 :SSS T0547 328 :NH 1oewA 87 :DV Number of specific fragments extracted= 2 number of extra gaps= 2 total=95877 # 2bmoA.324.302 read from T0547.t06.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)N328 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 324 :FVAA 2bmoA 303 :SFLT T0547 331 :VL 2bmoA 310 :AF Number of specific fragments extracted= 2 number of extra gaps= 1 total=95879 # 1xdnA.324.151 read from T0547.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)A326 (1xdnA)S201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1xdnA)H205 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FV 1xdnA 199 :QY T0547 327 :ANH 1xdnA 202 :PEL T0547 331 :VL 1xdnA 206 :FF Number of specific fragments extracted= 3 number of extra gaps= 2 total=95882 # 1yt5A.324.114 read from T0547.t06.many.frag # found chain 1yt5A in template set Warning: unaligning (T0547)H329 (1yt5A)D120 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FVAAN 1yt5A 115 :HLALN T0547 330 :AVL 1yt5A 121 :VTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95884 # 2bvcA.324.136 read from T0547.t06.many.frag # found chain 2bvcA in template set T0547 324 :FVAANHAVL 2bvcA 129 :YFGAEAEFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=95885 # 1t4bA.324.267 read from T0547.t06.many.frag # found chain 1t4bA in training set T0547 324 :FVAANHAVL 1t4bA 268 :VGALRCHSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=95886 # 1zhxA.324.223 read from T0547.t06.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)A327 (1zhxA)S223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1zhxA)G226 because T (delta_L) conformation "forbidden" or filtered. T0547 324 :FVA 1zhxA 220 :YIQ T0547 328 :NH 1zhxA 224 :ST T0547 331 :VL 1zhxA 227 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=95889 # 2fn0A.324.316 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)A326 (2fn0A)R316 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (2fn0A)Q320 because E (beta_S) conformation "forbidden" or filtered. T0547 324 :FV 2fn0A 314 :RQ T0547 327 :ANH 2fn0A 317 :GSV T0547 331 :VL 2fn0A 321 :HL Number of specific fragments extracted= 3 number of extra gaps= 2 total=95892 # 1kqfA.324.617 read from T0547.t06.many.frag # found chain 1kqfA in training set Warning: unaligning (T0547)A327 (1kqfA)E621 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1kqfA)E622 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1kqfA)G624 because Y (epsilon') conformation "forbidden" or filtered. T0547 324 :FVA 1kqfA 618 :CFA T0547 329 :H 1kqfA 623 :D T0547 331 :VL 1kqfA 625 :SI Number of specific fragments extracted= 3 number of extra gaps= 2 total=95895 # 1knwA.325.272 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 325 :VAANHAVLI 1knwA 273 :LVAQSGVLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=95896 # 7odcA.325.278 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 325 :VAANHAVLI 7odcA 279 :YVASAFTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=95897 # 1u8xX.325.220 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)A326 (1u8xX)G199 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. T0547 325 :V 1u8xX 198 :Y T0547 327 :ANH 1u8xX 200 :LNH T0547 331 :VLI 1u8xX 204 :GWW Number of specific fragments extracted= 3 number of extra gaps= 2 total=95900 # 1gq8A.325.158 read from T0547.t06.many.frag # found chain 1gq8A in training set Warning: unaligning (T0547)A327 (1gq8A)G161 because S (epsilon) conformation "forbidden" or filtered. T0547 325 :VA 1gq8A 159 :IF T0547 328 :NHAVLI 1gq8A 162 :NAAVVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95902 # 1wckA.325.126 read from T0547.t06.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VAANH 1wckA 127 :VISET T0547 331 :VLI 1wckA 133 :FYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=95904 # 2c8mA.325.78 read from T0547.t06.many.frag # found chain 2c8mA in template set Warning: unaligning (T0547)N328 (2c8mA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VAA 2c8mA 79 :VYH T0547 329 :HAVLI 2c8mA 83 :LGDLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=95906 # 1uc2A.325.198 read from T0547.t06.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)A326 (1uc2A)S200 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :V 1uc2A 199 :G T0547 327 :ANHAVLI 1uc2A 201 :GNHFLEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95908 # 2bmoA.325.304 read from T0547.t06.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)A327 (2bmoA)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 325 :VA 2bmoA 305 :LT T0547 330 :AVLI 2bmoA 310 :AFRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95910 # 1si6X.325.78 read from T0547.t06.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)A327 (1si6X)T81 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VA 1si6X 79 :TI T0547 328 :NHAVLI 1si6X 82 :ETMGLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=95912 # 1b43A.325.176 read from T0547.t06.many.frag # found chain 1b43A in template set T0547 325 :VAANHAVLI 1b43A 176 :LLFGAPRLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=95913 # 1y2qA.325.3 read from T0547.t06.many.frag # found chain 1y2qA in template set Warning: unaligning (T0547)N328 (1y2qA)H7 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1y2qA)I11 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1y2qA)I11 T0547 325 :VAA 1y2qA 4 :LLI T0547 329 :HA 1y2qA 8 :SD T0547 333 :I 1y2qA 12 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=95916 # 1k47A.325.295 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)A326 (1k47A)G295 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1k47A)G296 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1k47A)D297 because S (epsilon) conformation "forbidden" or filtered. T0547 325 :V 1k47A 294 :G T0547 329 :HAVLI 1k47A 298 :CGIAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=95918 # 1a12A.325.237 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)A326 because of BadResidue code BAD_PEPTIDE in next template residue (1a12A)G248 Warning: unaligning (T0547)A327 because of BadResidue code BAD_PEPTIDE at template residue (1a12A)G248 T0547 325 :V 1a12A 246 :F T0547 328 :NHAVLI 1a12A 249 :AYFTFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95920 # 1vkdA.325.232 read from T0547.t06.many.frag # found chain 1vkdA in template set T0547 325 :VAANHAVLI 1vkdA 221 :ETSEGWLLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=95921 # 1xdnA.325.152 read from T0547.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)A326 (1xdnA)S201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1xdnA)H205 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :V 1xdnA 200 :Y T0547 327 :ANH 1xdnA 202 :PEL T0547 331 :VLI 1xdnA 206 :FFA Number of specific fragments extracted= 3 number of extra gaps= 2 total=95924 # 2fn0A.325.236 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)A327 (2fn0A)G236 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VA 2fn0A 234 :AL T0547 328 :NHAVLI 2fn0A 237 :FSPELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95926 # 1rcqA.325.227 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 325 :VAANHAVLI 1rcqA 228 :RLRPVMTLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=95927 # 2axtO.325.39 read from T0547.t06.many.frag # found chain 2axtO in template set Warning: unaligning (T0547)A326 (2axtO)I66 because E (beta_S) conformation "forbidden" or filtered. T0547 325 :V 2axtO 65 :R T0547 327 :ANHAVLI 2axtO 67 :ARLCLQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=95929 # 1tzlA.325.354 read from T0547.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)A330 (1tzlA)L361 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)C364 Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)C364 T0547 325 :VAANH 1tzlA 356 :ITEQS T0547 331 :V 1tzlA 362 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=95931 # 1h4aX.325.35 read from T0547.t06.many.frag # found chain 1h4aX in training set Warning: unaligning (T0547)A326 (1h4aX)V37 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1h4aX)S39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1h4aX)G40 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1h4aX)C41 because E (beta_S) conformation "forbidden" or filtered. T0547 325 :V 1h4aX 36 :R T0547 327 :A 1h4aX 38 :D T0547 331 :VLI 1h4aX 42 :WML Number of specific fragments extracted= 3 number of extra gaps= 2 total=95934 # 1n8yC.325.414 read from T0547.t06.many.frag # found chain 1n8yC in template set Warning: unaligning (T0547)V331 (1n8yC)S421 because G (3-10) conformation "forbidden" or filtered. T0547 325 :VAANHA 1n8yC 415 :LHDGAY T0547 332 :LI 1n8yC 422 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=95936 # 1zn6A.325.100 read from T0547.t06.many.frag # found chain 1zn6A in training set Warning: unaligning (T0547)A330 (1zn6A)C106 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VAANH 1zn6A 101 :AKAQH T0547 331 :VLI 1zn6A 107 :IIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=95938 # 1f9vA.325.213 read from T0547.t06.many.frag # found chain 1f9vA in training set Warning: unaligning (T0547)N328 (1f9vA)S599 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1f9vA)H600 because P (beta_P) conformation "forbidden" or filtered. T0547 325 :VAA 1f9vA 596 :SSA T0547 330 :AVLI 1f9vA 601 :SIFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=95940 # 2bvcA.325.137 read from T0547.t06.many.frag # found chain 2bvcA in template set T0547 325 :VAANHAVLI 2bvcA 130 :FGAEAEFYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=95941 # 1ecrA.325.26 read from T0547.t06.many.frag # found chain 1ecrA in template set T0547 325 :VAANHAVLI 1ecrA 27 :HLEQHKLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=95942 # 2fn0A.325.317 read from T0547.t06.many.frag # found chain 2fn0A in template set Warning: unaligning (T0547)A326 (2fn0A)R316 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (2fn0A)G317 because S (epsilon) conformation "forbidden" or filtered. T0547 325 :V 2fn0A 315 :Q T0547 328 :NHAVLI 2fn0A 318 :SVQHLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=95944 # 1t4bA.325.268 read from T0547.t06.many.frag # found chain 1t4bA in training set T0547 325 :VAANHAVLI 1t4bA 269 :GALRCHSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=95945 # 1mg7A.325.296 read from T0547.t06.many.frag # found chain 1mg7A in training set Warning: unaligning (T0547)A330 (1mg7A)G308 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VAANH 1mg7A 303 :EVQQG T0547 331 :VLI 1mg7A 309 :ILV Number of specific fragments extracted= 2 number of extra gaps= 1 total=95947 # 2a5zA.325.96 read from T0547.t06.many.frag # found chain 2a5zA in template set Warning: unaligning (T0547)A330 (2a5zA)S102 because Y (epsilon') conformation "forbidden" or filtered. T0547 325 :VAANH 2a5zA 97 :TTANA T0547 331 :VLI 2a5zA 103 :FLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95949 # 1bvoA.325.137 read from T0547.t06.many.frag # found chain 1bvoA in template set T0547 325 :VAANHAVLI 1bvoA 185 :IDLNAVRLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=95950 # 1knwA.326.273 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A334 (1knwA)T282 because E (beta_S) conformation "forbidden" or filtered. T0547 326 :AANHAVLI 1knwA 274 :VAQSGVLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=95951 # 7odcA.326.279 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 326 :AANHAVLIA 7odcA 280 :VASAFTLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=95952 # 1u8xX.326.221 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)H329 (1u8xX)H202 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. T0547 326 :AAN 1u8xX 199 :GLN T0547 331 :VLIA 1u8xX 204 :GWWT Number of specific fragments extracted= 2 number of extra gaps= 1 total=95954 # 1wckA.326.127 read from T0547.t06.many.frag # found chain 1wckA in training set T0547 326 :AANHAVLIA 1wckA 128 :ISETGFYKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=95955 # 1rcqA.326.228 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :AANHAVLI 1rcqA 229 :LRPVMTLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=95956 # 1n7zA.326.122 read from T0547.t06.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)A326 (1n7zA)E123 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1n7zA)G125 because T (delta_L) conformation "forbidden" or filtered. T0547 327 :A 1n7zA 124 :S T0547 329 :HAVLIA 1n7zA 126 :AGWLVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=95958 # 2c8mA.326.79 read from T0547.t06.many.frag # found chain 2c8mA in template set Warning: unaligning (T0547)N328 (2c8mA)D82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (2c8mA)F88 because E (beta_S) conformation "forbidden" or filtered. T0547 326 :AA 2c8mA 80 :YH T0547 329 :HAVLI 2c8mA 83 :LGDLN Number of specific fragments extracted= 2 number of extra gaps= 2 total=95960 # 1si6X.326.79 read from T0547.t06.many.frag # found chain 1si6X in training set T0547 326 :AANHAVLIA 1si6X 80 :ITETMGLTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=95961 # 1xdnA.326.153 read from T0547.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)A326 (1xdnA)S201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1xdnA)H205 because Y (epsilon') conformation "forbidden" or filtered. T0547 327 :ANH 1xdnA 202 :PEL T0547 331 :VLIA 1xdnA 206 :FFAF Number of specific fragments extracted= 2 number of extra gaps= 2 total=95963 # 1gq8A.326.159 read from T0547.t06.many.frag # found chain 1gq8A in training set T0547 326 :AANHAVLIA 1gq8A 160 :FGNAAVVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=95964 # 1b43A.326.177 read from T0547.t06.many.frag # found chain 1b43A in template set Warning: unaligning (T0547)N328 (1b43A)G179 because T (delta_L) conformation "forbidden" or filtered. T0547 326 :AA 1b43A 177 :LF T0547 329 :HAVLIA 1b43A 180 :APRLVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=95966 # 1vkdA.326.233 read from T0547.t06.many.frag # found chain 1vkdA in template set T0547 326 :AANHAVLIA 1vkdA 222 :TSEGWLLIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=95967 # 1ecrA.326.27 read from T0547.t06.many.frag # found chain 1ecrA in template set T0547 326 :AANHAVLIA 1ecrA 28 :LEQHKLLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=95968 # 1uc2A.326.199 read from T0547.t06.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)A326 (1uc2A)S200 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A327 (1uc2A)G201 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. T0547 328 :NH 1uc2A 202 :NH T0547 331 :VLIA 1uc2A 205 :LEVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=95970 # 1y2qA.326.4 read from T0547.t06.many.frag # found chain 1y2qA in template set Warning: unaligning (T0547)N328 (1y2qA)H7 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1y2qA)I11 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1y2qA)I11 Warning: unaligning (T0547)A334 (1y2qA)Y13 because E (beta_S) conformation "forbidden" or filtered. T0547 326 :AA 1y2qA 5 :LI T0547 329 :HA 1y2qA 8 :SD T0547 333 :I 1y2qA 12 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=95973 # 1xjvA.326.152 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A327 (1xjvA)M159 because D (zeta) conformation "forbidden" or filtered. T0547 326 :A 1xjvA 158 :P T0547 328 :NHAVLIA 1xjvA 160 :QYFDLTC Number of specific fragments extracted= 2 number of extra gaps= 1 total=95975 # 2bmoA.326.305 read from T0547.t06.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 326 :AA 2bmoA 306 :TG T0547 330 :AVLIA 2bmoA 310 :AFRVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=95977 # 3sil.326.179 read from T0547.t06.many.frag # found chain 3sil in training set Warning: unaligning (T0547)A327 (3sil)L184 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (3sil)G187 because T (delta_L) conformation "forbidden" or filtered. T0547 326 :A 3sil 183 :Q T0547 328 :NH 3sil 185 :ND T0547 331 :VLIA 3sil 188 :KLVF Number of specific fragments extracted= 3 number of extra gaps= 2 total=95980 # 1k47A.326.296 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)A327 (1k47A)G296 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :A 1k47A 295 :G T0547 328 :NHAVLIA 1k47A 297 :DCGIALS Number of specific fragments extracted= 2 number of extra gaps= 1 total=95982 # 2bvcA.326.138 read from T0547.t06.many.frag # found chain 2bvcA in template set T0547 326 :AANHAVLIA 2bvcA 131 :GAEAEFYIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=95983 # 1bvoA.326.138 read from T0547.t06.many.frag # found chain 1bvoA in template set T0547 326 :AANHAVLIA 1bvoA 186 :DLNAVRLCF Number of specific fragments extracted= 1 number of extra gaps= 0 total=95984 # 1a12A.326.238 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)A326 because of BadResidue code BAD_PEPTIDE in next template residue (1a12A)G248 Warning: unaligning (T0547)A327 because of BadResidue code BAD_PEPTIDE at template residue (1a12A)G248 Warning: unaligning (T0547)A330 (1a12A)F251 because Y (epsilon') conformation "forbidden" or filtered. T0547 328 :NH 1a12A 249 :AY T0547 331 :VLIA 1a12A 252 :TFAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=95986 # 1w2fA.326.221 read from T0547.t06.many.frag # found chain 1w2fA in training set Warning: unaligning (T0547)A334 (1w2fA)I415 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :AANHAVLI 1w2fA 407 :CHRAGVWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=95987 # 1f9vA.326.214 read from T0547.t06.many.frag # found chain 1f9vA in training set T0547 326 :AANHAVLIA 1f9vA 597 :SASHSIFII Number of specific fragments extracted= 1 number of extra gaps= 0 total=95988 # 1h4aX.326.36 read from T0547.t06.many.frag # found chain 1h4aX in training set Warning: unaligning (T0547)N328 (1h4aX)S39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1h4aX)G40 because S (epsilon) conformation "forbidden" or filtered. T0547 326 :AA 1h4aX 37 :VD T0547 330 :AVLIA 1h4aX 41 :CWMLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=95990 # 1zn6A.326.101 read from T0547.t06.many.frag # found chain 1zn6A in training set Warning: unaligning (T0547)H329 (1zn6A)H105 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1zn6A)C106 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :AAN 1zn6A 102 :KAQ T0547 331 :VLIA 1zn6A 107 :IIPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=95992 # 1l1oC.326.22 read from T0547.t06.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)A327 (1l1oC)P459 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1l1oC)F462 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1l1oC)S464 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1l1oC)A466 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :A 1l1oC 458 :K T0547 328 :NH 1l1oC 460 :DY T0547 331 :V 1l1oC 463 :S T0547 333 :I 1l1oC 465 :V Number of specific fragments extracted= 4 number of extra gaps= 4 total=95996 # 1ieaB.326.138 read from T0547.t06.many.frag # found chain 1ieaB in template set Warning: unaligning (T0547)A327 (1ieaB)E110 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1ieaB)H111 because Y (epsilon') conformation "forbidden" or filtered. T0547 326 :A 1ieaB 109 :L T0547 329 :HAVLIA 1ieaB 112 :HNLLVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=95998 # 1n8yC.326.415 read from T0547.t06.many.frag # found chain 1n8yC in template set Warning: unaligning (T0547)A327 (1n8yC)D417 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1n8yC)Y420 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 (1n8yC)S421 because G (3-10) conformation "forbidden" or filtered. T0547 326 :A 1n8yC 416 :H T0547 328 :NH 1n8yC 418 :GA T0547 332 :LIA 1n8yC 422 :LTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=96001 # 2ae0X.326.264 read from T0547.t06.many.frag # found chain 2ae0X in template set T0547 326 :AANHAVLIA 2ae0X 265 :IPPGTTLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=96002 # 1knwA.327.274 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A334 (1knwA)T282 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVLI 1knwA 275 :AQSGVLI T0547 335 :P 1knwA 283 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=96004 # 7odcA.327.280 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 327 :ANHAVLIAP 7odcA 281 :ASAFTLAVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=96005 # 1u8xX.327.222 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANH 1u8xX 200 :LNH T0547 331 :VLIA 1u8xX 204 :GWWT Number of specific fragments extracted= 2 number of extra gaps= 2 total=96007 # 1n7zA.327.123 read from T0547.t06.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)A330 (1n7zA)G127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANH 1n7zA 124 :SGA T0547 331 :VLIA 1n7zA 128 :WLVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=96009 # 1wckA.327.128 read from T0547.t06.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)N328 (1wckA)E130 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :A 1wckA 129 :S T0547 329 :H 1wckA 131 :T T0547 331 :VLIA 1wckA 133 :FYKI Number of specific fragments extracted= 3 number of extra gaps= 3 total=96012 # 3sil.327.180 read from T0547.t06.many.frag # found chain 3sil in training set Warning: unaligning (T0547)A330 (3sil)G187 because T (delta_L) conformation "forbidden" or filtered. T0547 327 :ANH 3sil 184 :LND T0547 331 :VLIAP 3sil 188 :KLVFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=96014 # 1rcqA.327.229 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A327 (1rcqA)R230 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLI 1rcqA 231 :PVMTLE Number of specific fragments extracted= 1 number of extra gaps= 2 total=96015 # 1xjvA.327.153 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A327 (1xjvA)M159 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N328 (1xjvA)Q160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1xjvA)F162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 1xjvA 161 :Y T0547 331 :VLI 1xjvA 163 :DLT Number of specific fragments extracted= 2 number of extra gaps= 3 total=96017 # 1b43A.327.178 read from T0547.t06.many.frag # found chain 1b43A in template set Warning: unaligning (T0547)N328 (1b43A)G179 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1b43A)N186 because T (delta_L) conformation "forbidden" or filtered. T0547 327 :A 1b43A 178 :F T0547 329 :HAVLIA 1b43A 180 :APRLVR Number of specific fragments extracted= 2 number of extra gaps= 2 total=96019 # 1ecrA.327.28 read from T0547.t06.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)P335 (1ecrA)R37 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVLIA 1ecrA 29 :EQHKLLVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=96020 # 2c8mA.327.80 read from T0547.t06.many.frag # found chain 2c8mA in template set Warning: unaligning (T0547)N328 (2c8mA)D82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (2c8mA)G84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (2c8mA)S89 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :A 2c8mA 81 :H T0547 329 :H 2c8mA 83 :L T0547 331 :VLIA 2c8mA 85 :DLNF Number of specific fragments extracted= 3 number of extra gaps= 3 total=96023 # 1l1oC.327.23 read from T0547.t06.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)A334 (1l1oC)A466 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVLI 1l1oC 459 :PDYFSSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=96024 # 2bvcA.327.139 read from T0547.t06.many.frag # found chain 2bvcA in template set Warning: unaligning (T0547)V331 (2bvcA)F136 because Y (epsilon') conformation "forbidden" or filtered. T0547 327 :ANHA 2bvcA 132 :AEAE T0547 332 :LIAP 2bvcA 137 :YIFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=96026 # 1si6X.327.80 read from T0547.t06.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)P335 (1si6X)Y89 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVLIA 1si6X 81 :TETMGLTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=96027 # 1y2qA.327.5 read from T0547.t06.many.frag # found chain 1y2qA in template set Warning: unaligning (T0547)N328 (1y2qA)H7 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1y2qA)I11 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1y2qA)I11 Warning: unaligning (T0547)P335 (1y2qA)E14 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :A 1y2qA 6 :I T0547 329 :HA 1y2qA 8 :SD T0547 333 :IA 1y2qA 12 :EY Number of specific fragments extracted= 3 number of extra gaps= 3 total=96030 # 1xdnA.327.154 read from T0547.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)A330 (1xdnA)H205 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1xdnA)F207 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xdnA)D210 because Y (epsilon') conformation "forbidden" or filtered. T0547 327 :ANH 1xdnA 202 :PEL T0547 331 :V 1xdnA 206 :F T0547 333 :IA 1xdnA 208 :AF Number of specific fragments extracted= 3 number of extra gaps= 3 total=96033 # 2ae0X.327.265 read from T0547.t06.many.frag # found chain 2ae0X in template set T0547 327 :ANHAVLIAP 2ae0X 266 :PPGTTLLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=96034 # 1uc2A.327.200 read from T0547.t06.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)A330 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uc2A)V209 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANH 1uc2A 201 :GNH T0547 331 :VLIA 1uc2A 205 :LEVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=96036 # 1ieaB.327.139 read from T0547.t06.many.frag # found chain 1ieaB in template set T0547 327 :ANHAVLIAP 1ieaB 110 :EHHNLLVCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=96037 # 1vkdA.327.234 read from T0547.t06.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)H329 (1vkdA)G225 because S (epsilon) conformation "forbidden" or filtered. T0547 327 :AN 1vkdA 223 :SE T0547 330 :AVLIAP 1vkdA 226 :WLLIYH Number of specific fragments extracted= 2 number of extra gaps= 1 total=96039 # 1bvoA.327.139 read from T0547.t06.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)A330 (1bvoA)V190 because Y (epsilon') conformation "forbidden" or filtered. T0547 327 :ANH 1bvoA 187 :LNA T0547 331 :VLIAP 1bvoA 191 :RLCFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=96041 # 1br9.327.13 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :ANHAVLIA 1br9 14 :NADVVIRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=96042 # 1me4A.327.159 read from T0547.t06.many.frag # found chain 1me4A in training set Warning: unaligning (T0547)P335 (1me4A)G165 because Y (epsilon') conformation "forbidden" or filtered. T0547 327 :ANHAVLIA 1me4A 157 :LDHGVLLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=96043 # 1oz2A.327.161 read from T0547.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)A327 (1oz2A)N358 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1oz2A)C363 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1oz2A)C363 Warning: unaligning (T0547)A334 (1oz2A)A365 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1oz2A)S366 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHA 1oz2A 359 :PSL T0547 333 :I 1oz2A 364 :V Number of specific fragments extracted= 2 number of extra gaps= 3 total=96045 # 2bmoA.327.306 read from T0547.t06.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE in next template residue (2bmoA)A309 Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE at template residue (2bmoA)A309 T0547 327 :A 2bmoA 307 :G T0547 330 :AVLIAP 2bmoA 310 :AFRVWN Number of specific fragments extracted= 2 number of extra gaps= 1 total=96047 # 1bywA.327.77 read from T0547.t06.many.frag # found chain 1bywA in template set Warning: unaligning (T0547)P335 (1bywA)D111 because D (zeta) conformation "forbidden" or filtered. T0547 327 :ANHAVLIA 1bywA 103 :GSCFLCLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=96048 # 1zx5A.327.227 read from T0547.t06.many.frag # found chain 1zx5A in template set T0547 327 :ANHAVLIAP 1zx5A 227 :ENFGLEVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=96049 # 1gq8A.327.160 read from T0547.t06.many.frag # found chain 1gq8A in training set Warning: unaligning (T0547)A334 (1gq8A)Q168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1gq8A)D169 because L (left) conformation "forbidden" or filtered. T0547 327 :ANHAVLI 1gq8A 161 :GNAAVVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=96050 # 1f9vA.327.215 read from T0547.t06.many.frag # found chain 1f9vA in training set Warning: unaligning (T0547)H329 (1f9vA)H600 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1f9vA)H606 because E (beta_S) conformation "forbidden" or filtered. T0547 327 :AN 1f9vA 598 :AS T0547 330 :AVLIA 1f9vA 601 :SIFII Number of specific fragments extracted= 2 number of extra gaps= 2 total=96052 # 1oz2A.327.54 read from T0547.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)A327 because of BadResidue code BAD_PEPTIDE in next template residue (1oz2A)P252 Warning: unaligning (T0547)N328 because of BadResidue code BAD_PEPTIDE at template residue (1oz2A)P252 Warning: unaligning (T0547)P335 (1oz2A)T259 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1oz2A 253 :SMYFIL Number of specific fragments extracted= 1 number of extra gaps= 2 total=96053 # 1knwA.328.275 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 328 :NHAVLIAPV 1knwA 276 :QSGVLITQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=96054 # 7odcA.328.281 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 328 :NHAVLIAPV 7odcA 282 :SAFTLAVNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=96055 # 1u8xX.328.223 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1u8xX 201 :NH T0547 331 :VLIA 1u8xX 204 :GWWT T0547 336 :V 1u8xX 209 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=96058 # 1n7zA.328.124 read from T0547.t06.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)N328 (1n7zA)G125 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1n7zA 126 :AGWLVY T0547 336 :V 1n7zA 133 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=96060 # 1rcqA.328.230 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)N328 (1rcqA)P231 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLI 1rcqA 232 :VMTLE T0547 336 :V 1rcqA 239 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=96062 # 1wckA.328.129 read from T0547.t06.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1wckA 130 :ET T0547 331 :VLIA 1wckA 133 :FYKI T0547 336 :V 1wckA 138 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=96065 # 3sil.328.181 read from T0547.t06.many.frag # found chain 3sil in training set Warning: unaligning (T0547)A330 (3sil)G187 because T (delta_L) conformation "forbidden" or filtered. T0547 328 :NH 3sil 185 :ND T0547 331 :VLIAPV 3sil 188 :KLVFPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96067 # 1l1oC.328.24 read from T0547.t06.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)A330 (1l1oC)F462 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1l1oC)S464 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1l1oC 460 :DY T0547 331 :V 1l1oC 463 :S T0547 333 :IA 1l1oC 465 :VA T0547 336 :V 1l1oC 468 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=96071 # 1xjvA.328.154 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 1xjvA 160 :QYFDLTC T0547 336 :V 1xjvA 168 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=96073 # 1ecrA.328.29 read from T0547.t06.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)N328 (1ecrA)Q30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1ecrA)R37 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1ecrA 31 :HKLLVA T0547 336 :V 1ecrA 38 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=96075 # 1b43A.328.179 read from T0547.t06.many.frag # found chain 1b43A in template set Warning: unaligning (T0547)A334 (1b43A)R185 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1b43A)N186 because T (delta_L) conformation "forbidden" or filtered. T0547 328 :NHAVLI 1b43A 179 :GAPRLV T0547 336 :V 1b43A 187 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=96077 # 1te0A.328.16 read from T0547.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 T0547 328 :NHAVL 1te0A 53 :RAAPA T0547 335 :PV 1te0A 60 :NV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96079 # 1xdnA.328.155 read from T0547.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)A330 (1xdnA)H205 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xdnA)D210 because Y (epsilon') conformation "forbidden" or filtered. T0547 328 :NH 1xdnA 203 :EL T0547 331 :VLIA 1xdnA 206 :FFAF T0547 336 :V 1xdnA 211 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=96082 # 2bvcA.328.140 read from T0547.t06.many.frag # found chain 2bvcA in template set Warning: unaligning (T0547)A330 (2bvcA)E135 because P (beta_P) conformation "forbidden" or filtered. T0547 328 :NH 2bvcA 133 :EA T0547 331 :VLIAPV 2bvcA 136 :FYIFDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=96084 # 1bywA.328.78 read from T0547.t06.many.frag # found chain 1bywA in template set Warning: unaligning (T0547)P335 (1bywA)D111 because D (zeta) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 1bywA 104 :SCFLCLV T0547 336 :V 1bywA 112 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=96086 # 1oz2A.328.162 read from T0547.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1oz2A)C363 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1oz2A)C363 Warning: unaligning (T0547)A334 (1oz2A)A365 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1oz2A)S366 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHA 1oz2A 359 :PSL T0547 333 :I 1oz2A 364 :V T0547 336 :V 1oz2A 367 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=96089 # 2c8mA.328.81 read from T0547.t06.many.frag # found chain 2c8mA in template set Warning: unaligning (T0547)N328 (2c8mA)D82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (2c8mA)S89 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 2c8mA 83 :LGDLNF T0547 336 :V 2c8mA 90 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=96091 # 1cewI.328.30 read from T0547.t06.many.frag # found chain 1cewI in template set Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE in next template residue (1cewI)S41 Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S41 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S42 Warning: unaligning (T0547)P335 (1cewI)R46 because Y (epsilon') conformation "forbidden" or filtered. T0547 328 :N 1cewI 39 :K T0547 332 :LIA 1cewI 43 :RVV T0547 336 :V 1cewI 47 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=96094 # 1br9.328.14 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)A330 (1br9)V17 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1br9 15 :AD T0547 331 :VLIA 1br9 18 :VIRA T0547 336 :V 1br9 23 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=96097 # 2ae0X.328.266 read from T0547.t06.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)N328 (2ae0X)P267 because P (beta_P) conformation "forbidden" or filtered. T0547 329 :HAVLIAPV 2ae0X 268 :GTTLLAEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=96098 # 1y2qA.328.6 read from T0547.t06.many.frag # found chain 1y2qA in template set Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1y2qA)I11 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1y2qA)I11 Warning: unaligning (T0547)P335 (1y2qA)E14 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHA 1y2qA 7 :HSD T0547 333 :IA 1y2qA 12 :EY T0547 336 :V 1y2qA 15 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=96101 # 1si6X.328.81 read from T0547.t06.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)P335 (1si6X)Y89 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NHAVLIA 1si6X 82 :ETMGLTV T0547 336 :V 1si6X 90 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=96103 # 1s1dA.328.111 read from T0547.t06.many.frag # found chain 1s1dA in training set T0547 328 :NHAVLIAPV 1s1dA 112 :DRTGVVYQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=96104 # 1ieaB.328.140 read from T0547.t06.many.frag # found chain 1ieaB in template set Warning: unaligning (T0547)N328 (1ieaB)H111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H329 (1ieaB)H112 because P (beta_P) conformation "forbidden" or filtered. T0547 330 :AVLIAPV 1ieaB 113 :NLLVCSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=96105 # 1uc2A.328.201 read from T0547.t06.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)A330 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uc2A)V209 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :NH 1uc2A 202 :NH T0547 331 :VLIA 1uc2A 205 :LEVQ T0547 336 :V 1uc2A 210 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=96108 # 1vkdA.328.235 read from T0547.t06.many.frag # found chain 1vkdA in template set T0547 328 :NHAVLIAPV 1vkdA 224 :EGWLLIYHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=96109 # 1zx5A.328.228 read from T0547.t06.many.frag # found chain 1zx5A in template set Warning: unaligning (T0547)A330 (1zx5A)G230 because Y (epsilon') conformation "forbidden" or filtered. T0547 328 :NH 1zx5A 228 :NF T0547 331 :VLIAPV 1zx5A 231 :LEVVDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96111 # 1bvoA.328.140 read from T0547.t06.many.frag # found chain 1bvoA in template set T0547 328 :NHAVLIAPV 1bvoA 188 :NAVRLCFQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=96112 # 1lmiA.328.19 read from T0547.t06.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)H329 (1lmiA)Q21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. T0547 328 :N 1lmiA 20 :G T0547 330 :AVLIA 1lmiA 22 :VVLGW T0547 336 :V 1lmiA 28 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=96115 # 1fuiA.328.353 read from T0547.t06.many.frag # found chain 1fuiA in template set Warning: unaligning (T0547)N328 (1fuiA)G354 because T (delta_L) conformation "forbidden" or filtered. T0547 329 :HAVLIAPV 1fuiA 355 :TAQVFADV Number of specific fragments extracted= 1 number of extra gaps= 1 total=96116 # 1knwA.329.276 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 329 :HAVLIAPVL 1knwA 277 :SGVLITQVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=96117 # 7odcA.329.282 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 329 :HAVLIAPVL 7odcA 283 :AFTLAVNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=96118 # 1u8xX.329.224 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1u8xX 202 :HFGWWT T0547 336 :VL 1u8xX 209 :IQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=96120 # 1rcqA.329.231 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLI 1rcqA 232 :VMTLE T0547 336 :VL 1rcqA 239 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=96122 # 1n7zA.329.125 read from T0547.t06.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1n7zA 126 :AGWLVY T0547 336 :VL 1n7zA 133 :CL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96124 # 1wckA.329.130 read from T0547.t06.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 1wckA 131 :T T0547 331 :VLIA 1wckA 133 :FYKI T0547 336 :VL 1wckA 138 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=96127 # 1l1oC.329.25 read from T0547.t06.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)A330 (1l1oC)F462 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1l1oC)S464 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :H 1l1oC 461 :Y T0547 331 :V 1l1oC 463 :S T0547 333 :IA 1l1oC 465 :VA T0547 336 :VL 1l1oC 468 :VV Number of specific fragments extracted= 4 number of extra gaps= 3 total=96131 # 3sil.329.182 read from T0547.t06.many.frag # found chain 3sil in training set Warning: unaligning (T0547)H329 (3sil)D186 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (3sil)G187 because T (delta_L) conformation "forbidden" or filtered. T0547 331 :VLIAPVL 3sil 188 :KLVFPVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=96132 # 1te0A.329.17 read from T0547.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 T0547 329 :HAVL 1te0A 54 :AAPA T0547 335 :PVL 1te0A 60 :NVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=96134 # 1xjvA.329.155 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLI 1xjvA 161 :YFDLT T0547 336 :VL 1xjvA 168 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96136 # 1br9.329.15 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)A334 (1br9)A21 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLI 1br9 16 :DVVIR T0547 336 :VL 1br9 23 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96138 # 1zx5A.329.229 read from T0547.t06.many.frag # found chain 1zx5A in template set Warning: unaligning (T0547)H329 (1zx5A)F229 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIAPVL 1zx5A 230 :GLEVVDVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=96139 # 1oz2A.329.163 read from T0547.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1oz2A)C363 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1oz2A)C363 Warning: unaligning (T0547)P335 (1oz2A)S366 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HA 1oz2A 360 :SL T0547 333 :IA 1oz2A 364 :VA T0547 336 :VL 1oz2A 367 :VT Number of specific fragments extracted= 3 number of extra gaps= 2 total=96142 # 1bywA.329.79 read from T0547.t06.many.frag # found chain 1bywA in template set Warning: unaligning (T0547)P335 (1bywA)D111 because D (zeta) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1bywA 105 :CFLCLV T0547 336 :VL 1bywA 112 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96144 # 1cewI.329.31 read from T0547.t06.many.frag # found chain 1cewI in template set Warning: unaligning (T0547)H329 because of BadResidue code BAD_PEPTIDE in next template residue (1cewI)S41 Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S41 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S42 Warning: unaligning (T0547)P335 (1cewI)R46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 because of BadResidue code BAD_PEPTIDE in next template residue (1cewI)S49 T0547 332 :LIA 1cewI 43 :RVV T0547 336 :V 1cewI 47 :V Number of specific fragments extracted= 2 number of extra gaps= 3 total=96146 # 1s1dA.329.112 read from T0547.t06.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)V331 (1s1dA)G115 because T (delta_L) conformation "forbidden" or filtered. T0547 329 :HA 1s1dA 113 :RT T0547 332 :LIAPVL 1s1dA 116 :VVYQIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=96148 # 1fl0A.329.5 read from T0547.t06.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1fl0A 155 :LDLRIG T0547 336 :VL 1fl0A 162 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=96150 # 1xdnA.329.156 read from T0547.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)A330 (1xdnA)H205 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L332 (1xdnA)F207 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xdnA)D210 because Y (epsilon') conformation "forbidden" or filtered. T0547 329 :H 1xdnA 204 :L T0547 331 :V 1xdnA 206 :F T0547 333 :IA 1xdnA 208 :AF T0547 336 :VL 1xdnA 211 :IK Number of specific fragments extracted= 4 number of extra gaps= 3 total=96154 # 1ecrA.329.30 read from T0547.t06.many.frag # found chain 1ecrA in template set Warning: unaligning (T0547)H329 (1ecrA)H31 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A330 (1ecrA)K32 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1ecrA)R37 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1ecrA 33 :LLVA T0547 336 :VL 1ecrA 38 :VF Number of specific fragments extracted= 2 number of extra gaps= 2 total=96156 # 1lmiA.329.20 read from T0547.t06.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)H329 (1lmiA)Q21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIA 1lmiA 22 :VVLGW T0547 336 :V 1lmiA 28 :V Number of specific fragments extracted= 2 number of extra gaps= 3 total=96158 # 2bvcA.329.141 read from T0547.t06.many.frag # found chain 2bvcA in template set T0547 329 :HAVLIAPVL 2bvcA 134 :AEFYIFDSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=96159 # 1ieaB.329.141 read from T0547.t06.many.frag # found chain 1ieaB in template set T0547 329 :HAVLIAPVL 1ieaB 112 :HNLLVCSVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=96160 # 1uc2A.329.202 read from T0547.t06.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)P335 (1uc2A)V209 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1uc2A 203 :HFLEVQ T0547 336 :VL 1uc2A 210 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=96162 # 1y2qA.329.7 read from T0547.t06.many.frag # found chain 1y2qA in template set Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1y2qA)I11 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1y2qA)I11 Warning: unaligning (T0547)P335 (1y2qA)E14 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1y2qA)K16 because Y (epsilon') conformation "forbidden" or filtered. T0547 329 :HA 1y2qA 8 :SD T0547 333 :IA 1y2qA 12 :EY T0547 336 :V 1y2qA 15 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=96165 # 2ae0X.329.267 read from T0547.t06.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)H329 (2ae0X)G268 because T (delta_L) conformation "forbidden" or filtered. T0547 330 :AVLIAPVL 2ae0X 269 :TTLLAEVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=96166 # 2c8mA.329.82 read from T0547.t06.many.frag # found chain 2c8mA in template set Warning: unaligning (T0547)P335 (2c8mA)S89 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 2c8mA 83 :LGDLNF T0547 336 :VL 2c8mA 90 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96168 # 1o75A.329.70 read from T0547.t06.many.frag # found chain 1o75A in template set T0547 329 :HAVLIAPVL 1o75A 71 :VEVLGEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=96169 # 1b43A.329.180 read from T0547.t06.many.frag # found chain 1b43A in template set Warning: unaligning (T0547)P335 (1b43A)N186 because T (delta_L) conformation "forbidden" or filtered. T0547 329 :HAVLIA 1b43A 180 :APRLVR T0547 336 :VL 1b43A 187 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=96171 # 2aneA.329.76 read from T0547.t06.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 329 :HAVLIA 2aneA 70 :TVGTVA T0547 336 :VL 2aneA 77 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96173 # 1fuiA.329.354 read from T0547.t06.many.frag # found chain 1fuiA in template set T0547 329 :HAVLIAPVL 1fuiA 355 :TAQVFADVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=96174 # 1knwA.330.277 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 330 :AVLIAPVLE 1knwA 278 :GVLITQVRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=96175 # 7odcA.330.283 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIAPVL 7odcA 284 :FTLAVNII Number of specific fragments extracted= 1 number of extra gaps= 1 total=96176 # 1rcqA.330.232 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLI 1rcqA 233 :MTLE T0547 336 :VLE 1rcqA 239 :VIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=96178 # 1u8xX.330.225 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)A330 (1u8xX)F203 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1u8xX 204 :GWWT T0547 336 :VLE 1u8xX 209 :IQD Number of specific fragments extracted= 2 number of extra gaps= 2 total=96180 # 1n7zA.330.126 read from T0547.t06.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)A334 (1n7zA)Y131 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLI 1n7zA 127 :GWLV T0547 336 :VLE 1n7zA 133 :CLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=96182 # 1l1oC.330.26 read from T0547.t06.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)L332 (1l1oC)S464 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1l1oC)A466 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1l1oC)Y470 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AV 1l1oC 462 :FS T0547 333 :I 1l1oC 465 :V T0547 336 :VL 1l1oC 468 :VV Number of specific fragments extracted= 3 number of extra gaps= 3 total=96185 # 1wckA.330.131 read from T0547.t06.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A330 (1wckA)G132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1wckA 133 :FYKI T0547 336 :VLE 1wckA 138 :VIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=96187 # 1te0A.330.18 read from T0547.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 T0547 330 :AVL 1te0A 55 :APA T0547 335 :PVLE 1te0A 60 :NVYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=96189 # 1br9.330.16 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)A330 (1br9)V17 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIA 1br9 18 :VIRA T0547 336 :VL 1br9 23 :AV Number of specific fragments extracted= 2 number of extra gaps= 3 total=96191 # 3sil.330.183 read from T0547.t06.many.frag # found chain 3sil in training set T0547 330 :AVLIAPVLE 3sil 187 :GKLVFPVQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=96192 # 1cewI.330.32 read from T0547.t06.many.frag # found chain 1cewI in template set Warning: unaligning (T0547)A330 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S41 Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S42 Warning: unaligning (T0547)P335 (1cewI)R46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 because of BadResidue code BAD_PEPTIDE in next template residue (1cewI)S49 Warning: unaligning (T0547)E338 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S49 T0547 332 :LIA 1cewI 43 :RVV T0547 336 :V 1cewI 47 :V Number of specific fragments extracted= 2 number of extra gaps= 3 total=96194 # 1xjvA.330.156 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A330 (1xjvA)F162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1xjvA)G170 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLI 1xjvA 163 :DLT T0547 336 :VL 1xjvA 168 :LL Number of specific fragments extracted= 2 number of extra gaps= 3 total=96196 # 1lmiA.330.21 read from T0547.t06.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIA 1lmiA 22 :VVLGW T0547 336 :V 1lmiA 28 :V T0547 338 :E 1lmiA 30 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=96199 # 1fl0A.330.6 read from T0547.t06.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 1fl0A 156 :DLRIG T0547 336 :VLE 1fl0A 162 :IIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=96201 # 1bywA.330.80 read from T0547.t06.many.frag # found chain 1bywA in template set Warning: unaligning (T0547)P335 (1bywA)D111 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1bywA)V113 because D (zeta) conformation "forbidden" or filtered. T0547 330 :AVLIA 1bywA 106 :FLCLV T0547 336 :V 1bywA 112 :V T0547 338 :E 1bywA 114 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=96204 # 1s1dA.330.113 read from T0547.t06.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)V331 (1s1dA)G115 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1s1dA)G122 because S (epsilon) conformation "forbidden" or filtered. T0547 330 :A 1s1dA 114 :T T0547 332 :LIAPVL 1s1dA 116 :VVYQIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=96206 # 1oz2A.330.164 read from T0547.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1oz2A)C363 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1oz2A)C363 Warning: unaligning (T0547)P335 (1oz2A)S366 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :A 1oz2A 361 :L T0547 333 :IA 1oz2A 364 :VA T0547 336 :VLE 1oz2A 367 :VTD Number of specific fragments extracted= 3 number of extra gaps= 2 total=96209 # 1zx5A.330.230 read from T0547.t06.many.frag # found chain 1zx5A in template set Warning: unaligning (T0547)E338 (1zx5A)G238 because S (epsilon) conformation "forbidden" or filtered. T0547 330 :AVLIAPVL 1zx5A 230 :GLEVVDVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=96210 # 1o75A.330.71 read from T0547.t06.many.frag # found chain 1o75A in template set T0547 330 :AVLIAPVLE 1o75A 72 :EVLGEKVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=96211 # 2aneA.330.77 read from T0547.t06.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 2aneA 71 :VGTVA T0547 336 :VLE 2aneA 77 :ILQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=96213 # 1uc2A.330.203 read from T0547.t06.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)A330 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1uc2A)V209 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1uc2A 205 :LEVQ T0547 336 :VLE 1uc2A 210 :VDK Number of specific fragments extracted= 2 number of extra gaps= 2 total=96215 # 1xdnA.330.157 read from T0547.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0547)A330 (1xdnA)H205 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xdnA)D210 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIA 1xdnA 206 :FFAF T0547 336 :VLE 1xdnA 211 :IKY Number of specific fragments extracted= 2 number of extra gaps= 2 total=96217 # 1fuiA.330.355 read from T0547.t06.many.frag # found chain 1fuiA in template set T0547 330 :AVLIAPVLE 1fuiA 356 :AQVFADVRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=96218 # 1ieaB.330.142 read from T0547.t06.many.frag # found chain 1ieaB in template set Warning: unaligning (T0547)E338 (1ieaB)D121 because L (left) conformation "forbidden" or filtered. T0547 330 :AVLIAPVL 1ieaB 113 :NLLVCSVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=96219 # 1ucdA.330.158 read from T0547.t06.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)A330 (1ucdA)V159 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1ucdA)Q164 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1ucdA)A167 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1ucdA 160 :SYLV T0547 336 :VL 1ucdA 165 :VV Number of specific fragments extracted= 2 number of extra gaps= 3 total=96221 # 2bvcA.330.142 read from T0547.t06.many.frag # found chain 2bvcA in template set Warning: unaligning (T0547)V336 (2bvcA)S141 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIAP 2bvcA 135 :EFYIFD T0547 337 :LE 2bvcA 142 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=96223 # 1y2qA.330.8 read from T0547.t06.many.frag # found chain 1y2qA in template set Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1y2qA)I11 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1y2qA)I11 Warning: unaligning (T0547)P335 (1y2qA)E14 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1y2qA)D17 because P (beta_P) conformation "forbidden" or filtered. T0547 330 :A 1y2qA 9 :D T0547 333 :IA 1y2qA 12 :EY T0547 336 :VL 1y2qA 15 :VK Number of specific fragments extracted= 3 number of extra gaps= 3 total=96226 # 1go3E.330.41 read from T0547.t06.many.frag # found chain 1go3E in training set Warning: unaligning (T0547)V331 (1go3E)G43 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1go3E)S47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1go3E)D50 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :A 1go3E 42 :V T0547 332 :LIA 1go3E 44 :FVL T0547 336 :VL 1go3E 48 :IV Number of specific fragments extracted= 3 number of extra gaps= 3 total=96229 # 2f1lA.330.19 read from T0547.t06.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)P335 (2f1lA)K13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2f1lA)S16 because Y (epsilon') conformation "forbidden" or filtered. T0547 330 :AVLIA 2f1lA 8 :LVVIG T0547 336 :VL 2f1lA 14 :IV Number of specific fragments extracted= 2 number of extra gaps= 2 total=96231 2bi0A expands to /projects/compbio/data/pdb/2bi0.pdb.gz 2bi0A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2bi0A.330.108 read from T0547.t06.many.frag # adding 2bi0A to template set # found chain 2bi0A in template set Warning: unaligning (T0547)P335 (2bi0A)E114 because E (beta_S) conformation "forbidden" or filtered. T0547 330 :AVLIA 2bi0A 109 :LYTRT T0547 336 :VLE 2bi0A 115 :VVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=96233 # 1knwA.331.278 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 331 :VLIAPVLEL 1knwA 279 :VLITQVRSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=96234 # 7odcA.331.284 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIAPVL 7odcA 285 :TLAVNII T0547 339 :L 7odcA 293 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=96236 # 1rcqA.331.233 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLI 1rcqA 234 :TLE T0547 336 :VLEL 1rcqA 239 :VISV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96238 # 1n7zA.331.127 read from T0547.t06.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1n7zA 128 :WLVY T0547 336 :VLEL 1n7zA 133 :CLDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96240 # 1l1oC.331.27 read from T0547.t06.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)L332 (1l1oC)S464 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A334 (1l1oC)A466 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1l1oC)Y470 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :V 1l1oC 463 :S T0547 333 :I 1l1oC 465 :V T0547 336 :VL 1l1oC 468 :VV T0547 339 :L 1l1oC 471 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=96244 # 1u8xX.331.226 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)A334 (1u8xX)T207 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLI 1u8xX 204 :GWW T0547 336 :VLEL 1u8xX 209 :IQDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=96246 # 1br9.331.17 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1br9 18 :VIRA T0547 336 :VLEL 1br9 23 :AVSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=96248 # 1wckA.331.132 read from T0547.t06.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1wckA 133 :FYKI T0547 336 :VLEL 1wckA 138 :VIAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=96250 # 1lmiA.331.22 read from T0547.t06.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. T0547 331 :VLIA 1lmiA 23 :VLGW T0547 336 :V 1lmiA 28 :V T0547 339 :L 1lmiA 31 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=96253 # 1xjvA.331.157 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLI 1xjvA 163 :DLT T0547 336 :VLEL 1xjvA 168 :LLGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=96255 # 1te0A.331.19 read from T0547.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 T0547 331 :VL 1te0A 56 :PA T0547 335 :PVLEL 1te0A 60 :NVYNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=96257 # 1fl0A.331.7 read from T0547.t06.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1fl0A 157 :LRIG T0547 336 :VLEL 1fl0A 162 :IITA Number of specific fragments extracted= 2 number of extra gaps= 1 total=96259 # 3sil.331.184 read from T0547.t06.many.frag # found chain 3sil in training set T0547 331 :VLIAPVLEL 3sil 188 :KLVFPVQMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=96260 # 1cewI.331.33 read from T0547.t06.many.frag # found chain 1cewI in template set Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S42 Warning: unaligning (T0547)P335 (1cewI)R46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 because of BadResidue code BAD_PEPTIDE in next template residue (1cewI)S49 Warning: unaligning (T0547)E338 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S49 T0547 332 :LIA 1cewI 43 :RVV T0547 336 :V 1cewI 47 :V T0547 339 :L 1cewI 50 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=96263 # 1bywA.331.81 read from T0547.t06.many.frag # found chain 1bywA in template set Warning: unaligning (T0547)P335 (1bywA)D111 because D (zeta) conformation "forbidden" or filtered. T0547 331 :VLIA 1bywA 107 :LCLV T0547 336 :VLEL 1bywA 112 :VVPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96265 # 1s1dA.331.114 read from T0547.t06.many.frag # found chain 1s1dA in training set Warning: unaligning (T0547)V331 (1s1dA)G115 because T (delta_L) conformation "forbidden" or filtered. T0547 332 :LIAPVLEL 1s1dA 116 :VVYQIEGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=96266 # 1o75A.331.72 read from T0547.t06.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)E338 (1o75A)S80 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIAPVL 1o75A 73 :VLGEKVL T0547 339 :L 1o75A 81 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=96268 # 1oz2A.331.165 read from T0547.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)V331 because of BadResidue code BAD_PEPTIDE in next template residue (1oz2A)C363 Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1oz2A)C363 Warning: unaligning (T0547)A334 (1oz2A)A365 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1oz2A)S366 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :I 1oz2A 364 :V T0547 336 :VLEL 1oz2A 367 :VTDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=96270 # 2aneA.331.78 read from T0547.t06.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)V331 (2aneA)G72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 2aneA 73 :TVA T0547 336 :VLEL 2aneA 77 :ILQM Number of specific fragments extracted= 2 number of extra gaps= 2 total=96272 # 1c8uA.331.71 read from T0547.t06.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1c8uA 73 :PIIY T0547 336 :VLEL 1c8uA 78 :VETL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96274 # 2f1lA.331.20 read from T0547.t06.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)A334 (2f1lA)G12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (2f1lA)K13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2f1lA)S16 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLI 2f1lA 9 :VVI T0547 336 :VL 2f1lA 14 :IV T0547 339 :L 2f1lA 17 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=96277 # 2bi0A.331.109 read from T0547.t06.many.frag # found chain 2bi0A in template set Warning: unaligning (T0547)P335 (2bi0A)E114 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2bi0A)G117 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIA 2bi0A 110 :YTRT T0547 336 :VL 2bi0A 115 :VV T0547 339 :L 2bi0A 118 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=96280 # 1pfbA.331.3 read from T0547.t06.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)P335 (1pfbA)K30 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIA 1pfbA 26 :YAAE T0547 336 :VL 1pfbA 31 :II T0547 339 :L 1pfbA 34 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=96283 # 1go3E.331.42 read from T0547.t06.many.frag # found chain 1go3E in training set Warning: unaligning (T0547)V331 (1go3E)G43 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1go3E)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1go3E 44 :FVL T0547 336 :VLEL 1go3E 48 :IVDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=96285 # 1zx5A.331.231 read from T0547.t06.many.frag # found chain 1zx5A in template set T0547 331 :VLIAPVLEL 1zx5A 231 :LEVVDVTGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=96286 # 1ieaB.331.143 read from T0547.t06.many.frag # found chain 1ieaB in template set T0547 331 :VLIAPVLEL 1ieaB 114 :LLVCSVSDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=96287 # 1zd7A.331.121 read from T0547.t06.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)E338 (1zd7A)G129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1zd7A)R130 because Y (epsilon') conformation "forbidden" or filtered. T0547 331 :VLIAPVL 1zd7A 122 :IKMVKVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=96288 # 1uc2A.331.204 read from T0547.t06.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)P335 (1uc2A)V209 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1uc2A 205 :LEVQ T0547 336 :VLEL 1uc2A 210 :VDKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=96290 # 1x6oA.331.45 read from T0547.t06.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)P335 (1x6oA)K42 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1x6oA 38 :GRPC T0547 336 :VLEL 1x6oA 43 :VIDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96292 # 1ucdA.331.159 read from T0547.t06.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P335 (1ucdA)Q164 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1ucdA)A167 because E (beta_S) conformation "forbidden" or filtered. T0547 331 :VLIA 1ucdA 160 :SYLV T0547 336 :VL 1ucdA 165 :VV T0547 339 :L 1ucdA 168 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=96295 # 7odcA.332.285 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIAPVL 7odcA 286 :LAVNII T0547 339 :LF 7odcA 293 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=96297 # 1rcqA.332.234 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LI 1rcqA 235 :LE T0547 336 :VLELF 1rcqA 239 :VISVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=96299 # 1knwA.332.279 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 332 :LIAPVLELF 1knwA 280 :LITQVRSVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=96300 # 1l1oC.332.28 read from T0547.t06.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1l1oC 464 :SVA T0547 336 :VLELF 1l1oC 468 :VVYLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=96302 # 1n7zA.332.128 read from T0547.t06.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1n7zA)D135 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1n7zA 129 :LVY T0547 336 :VL 1n7zA 133 :CL T0547 339 :LF 1n7zA 136 :VP Number of specific fragments extracted= 3 number of extra gaps= 2 total=96305 # 1br9.332.18 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)A334 (1br9)A21 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LI 1br9 19 :IR T0547 336 :VL 1br9 23 :AV T0547 339 :LF 1br9 26 :EK Number of specific fragments extracted= 3 number of extra gaps= 2 total=96308 # 1xjvA.332.158 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1xjvA 164 :LTC T0547 336 :VLELF 1xjvA 168 :LLGKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=96310 # 1pfbA.332.4 read from T0547.t06.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)P335 (1pfbA)K30 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1pfbA 27 :AAE T0547 336 :VL 1pfbA 31 :II T0547 339 :LF 1pfbA 34 :KR Number of specific fragments extracted= 3 number of extra gaps= 2 total=96313 # 1wckA.332.133 read from T0547.t06.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1wckA 134 :YKI T0547 336 :VLELF 1wckA 138 :VIANT Number of specific fragments extracted= 2 number of extra gaps= 1 total=96315 # 1fl0A.332.8 read from T0547.t06.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1fl0A 158 :RIG T0547 336 :VLELF 1fl0A 162 :IITAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=96317 # 1lmiA.332.23 read from T0547.t06.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)A334 (1lmiA)W26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. T0547 332 :LI 1lmiA 24 :LG T0547 336 :V 1lmiA 28 :V T0547 339 :LF 1lmiA 31 :LK Number of specific fragments extracted= 3 number of extra gaps= 2 total=96320 # 1te0A.332.20 read from T0547.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)L66 T0547 332 :L 1te0A 57 :A T0547 335 :PVLEL 1te0A 60 :NVYNR Number of specific fragments extracted= 2 number of extra gaps= 2 total=96322 # 1cewI.332.34 read from T0547.t06.many.frag # found chain 1cewI in template set Warning: unaligning (T0547)P335 (1cewI)R46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 because of BadResidue code BAD_PEPTIDE in next template residue (1cewI)S49 Warning: unaligning (T0547)E338 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S49 T0547 332 :LIA 1cewI 43 :RVV T0547 336 :V 1cewI 47 :V T0547 339 :LF 1cewI 50 :AK Number of specific fragments extracted= 3 number of extra gaps= 2 total=96325 # 1zd7A.332.122 read from T0547.t06.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)E338 (1zd7A)G129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1zd7A)R130 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIAPVL 1zd7A 123 :KMVKVI T0547 340 :F 1zd7A 131 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=96327 # 1x6oA.332.46 read from T0547.t06.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)P335 (1x6oA)K42 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1x6oA 39 :RPC T0547 336 :VLELF 1x6oA 43 :VIDLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=96329 # 2f1lA.332.21 read from T0547.t06.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)A334 (2f1lA)G12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (2f1lA)K13 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LI 2f1lA 10 :VI T0547 336 :VLELF 2f1lA 14 :IVSVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=96331 # 1u8xX.332.227 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)P335 (1u8xX)S208 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1u8xX 205 :WWT T0547 336 :VLELF 1u8xX 209 :IQDQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=96333 # 2aneA.332.79 read from T0547.t06.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 2aneA 73 :TVA T0547 336 :VLELF 2aneA 77 :ILQML Number of specific fragments extracted= 2 number of extra gaps= 1 total=96335 # 1go3E.332.43 read from T0547.t06.many.frag # found chain 1go3E in training set Warning: unaligning (T0547)P335 (1go3E)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1go3E 44 :FVL T0547 336 :VLELF 1go3E 48 :IVDVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=96337 # 3sil.332.185 read from T0547.t06.many.frag # found chain 3sil in training set T0547 332 :LIAPVLELF 3sil 189 :LVFPVQMVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=96338 # 2bi0A.332.110 read from T0547.t06.many.frag # found chain 2bi0A in template set Warning: unaligning (T0547)P335 (2bi0A)E114 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2bi0A)G117 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 2bi0A 111 :TRT T0547 336 :VL 2bi0A 115 :VV T0547 339 :LF 2bi0A 118 :LR Number of specific fragments extracted= 3 number of extra gaps= 2 total=96341 # 1c8uA.332.72 read from T0547.t06.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 1c8uA 74 :IIY T0547 336 :VLELF 1c8uA 78 :VETLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=96343 # 1bywA.332.82 read from T0547.t06.many.frag # found chain 1bywA in template set Warning: unaligning (T0547)P335 (1bywA)D111 because D (zeta) conformation "forbidden" or filtered. T0547 332 :LIA 1bywA 108 :CLV T0547 336 :VLELF 1bywA 112 :VVPVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=96345 # 1o75A.332.73 read from T0547.t06.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)E338 (1o75A)S80 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIAPVL 1o75A 74 :LGEKVL T0547 339 :LF 1o75A 81 :KQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=96347 # 1s1dA.332.115 read from T0547.t06.many.frag # found chain 1s1dA in training set T0547 332 :LIAPVLELF 1s1dA 116 :VVYQIEGSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=96348 # 1ieaB.332.144 read from T0547.t06.many.frag # found chain 1ieaB in template set Warning: unaligning (T0547)E338 (1ieaB)D121 because L (left) conformation "forbidden" or filtered. T0547 332 :LIAPVL 1ieaB 115 :LVCSVS T0547 339 :LF 1ieaB 122 :FY Number of specific fragments extracted= 2 number of extra gaps= 1 total=96350 # 1oz2A.332.166 read from T0547.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)L332 because of BadResidue code BAD_PEPTIDE at template residue (1oz2A)C363 Warning: unaligning (T0547)P335 (1oz2A)S366 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1oz2A)D369 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1oz2A 364 :VA T0547 336 :VL 1oz2A 367 :VT T0547 339 :LF 1oz2A 370 :VV Number of specific fragments extracted= 3 number of extra gaps= 3 total=96353 # 1jb0E.332.18 read from T0547.t06.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)P335 (1jb0E)T22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 332 :LIA 1jb0E 19 :EVG T0547 336 :VL 1jb0E 23 :VA T0547 339 :LF 1jb0E 26 :VD Number of specific fragments extracted= 3 number of extra gaps= 2 total=96356 # 2b3gA.332.25 read from T0547.t06.many.frag # found chain 2b3gA in training set Warning: unaligning (T0547)P335 (2b3gA)Q26 because E (beta_S) conformation "forbidden" or filtered. T0547 332 :LIA 2b3gA 23 :PIL T0547 336 :VLELF 2b3gA 27 :VINIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=96358 # 1zx5A.332.232 read from T0547.t06.many.frag # found chain 1zx5A in template set T0547 332 :LIAPVLELF 1zx5A 232 :EVVDVTGTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=96359 # 1knwA.333.280 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 333 :IAPVLELFS 1knwA 281 :ITQVRSVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=96360 # 1rcqA.333.235 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1rcqA)S241 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :I 1rcqA 236 :E T0547 336 :VL 1rcqA 239 :VI T0547 339 :LFS 1rcqA 242 :VRD Number of specific fragments extracted= 3 number of extra gaps= 2 total=96363 # 7odcA.333.286 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IAPVL 7odcA 287 :AVNII T0547 339 :LFS 7odcA 293 :KKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=96365 # 1l1oC.333.29 read from T0547.t06.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1l1oC)Y470 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1l1oC 465 :VA T0547 336 :VL 1l1oC 468 :VV T0547 339 :LFS 1l1oC 471 :LRK Number of specific fragments extracted= 3 number of extra gaps= 2 total=96368 # 1pfbA.333.5 read from T0547.t06.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)P335 (1pfbA)K30 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1pfbA 28 :AE T0547 336 :VL 1pfbA 31 :II T0547 339 :LFS 1pfbA 34 :KRV Number of specific fragments extracted= 3 number of extra gaps= 2 total=96371 # 1br9.333.19 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1br9 20 :RA T0547 336 :VL 1br9 23 :AV T0547 339 :LFS 1br9 26 :EKE Number of specific fragments extracted= 3 number of extra gaps= 2 total=96374 # 1n7zA.333.129 read from T0547.t06.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1n7zA)D135 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1n7zA 130 :VY T0547 336 :VL 1n7zA 133 :CL T0547 339 :LFS 1n7zA 136 :VPD Number of specific fragments extracted= 3 number of extra gaps= 2 total=96377 # 1xjvA.333.159 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :I 1xjvA 165 :T T0547 336 :VLELFS 1xjvA 168 :LLGKAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=96379 # 1fl0A.333.9 read from T0547.t06.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 1fl0A 159 :IG T0547 336 :VLELFS 1fl0A 162 :IITARK Number of specific fragments extracted= 2 number of extra gaps= 1 total=96381 # 1lmiA.333.24 read from T0547.t06.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. T0547 333 :IA 1lmiA 25 :GW T0547 336 :V 1lmiA 28 :V T0547 339 :LFS 1lmiA 31 :LKS Number of specific fragments extracted= 3 number of extra gaps= 2 total=96384 # 2f1lA.333.22 read from T0547.t06.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)A334 (2f1lA)G12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (2f1lA)K13 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :I 2f1lA 11 :I T0547 336 :VLELFS 2f1lA 14 :IVSVYG Number of specific fragments extracted= 2 number of extra gaps= 1 total=96386 # 1zd7A.333.123 read from T0547.t06.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)E338 (1zd7A)G129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1zd7A)R130 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IAPVL 1zd7A 124 :MVKVI T0547 340 :FS 1zd7A 131 :RS Number of specific fragments extracted= 2 number of extra gaps= 1 total=96388 # 1c8uA.333.73 read from T0547.t06.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)A334 (1c8uA)Y76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :I 1c8uA 75 :I T0547 336 :VLELFS 1c8uA 78 :VETLRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=96390 # 1go3E.333.44 read from T0547.t06.many.frag # found chain 1go3E in training set Warning: unaligning (T0547)P335 (1go3E)S47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1go3E)D50 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1go3E 45 :VL T0547 336 :VL 1go3E 48 :IV T0547 339 :LFS 1go3E 51 :VKD Number of specific fragments extracted= 3 number of extra gaps= 2 total=96393 # 1te0A.333.21 read from T0547.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)I333 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)L66 Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)L66 T0547 335 :PVLEL 1te0A 60 :NVYNR Number of specific fragments extracted= 1 number of extra gaps= 2 total=96394 # 1wckA.333.134 read from T0547.t06.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 1wckA 135 :KI T0547 336 :VLELFS 1wckA 138 :VIANTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=96396 # 1x6oA.333.47 read from T0547.t06.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)A334 (1x6oA)C41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1x6oA)K42 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :I 1x6oA 40 :P T0547 336 :VLELFS 1x6oA 43 :VIDLSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96398 # 1cewI.333.35 read from T0547.t06.many.frag # found chain 1cewI in template set Warning: unaligning (T0547)P335 (1cewI)R46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 because of BadResidue code BAD_PEPTIDE in next template residue (1cewI)S49 Warning: unaligning (T0547)E338 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S49 T0547 333 :IA 1cewI 44 :VV T0547 336 :V 1cewI 47 :V T0547 339 :LFS 1cewI 50 :AKR Number of specific fragments extracted= 3 number of extra gaps= 2 total=96401 # 2bi0A.333.111 read from T0547.t06.many.frag # found chain 2bi0A in template set Warning: unaligning (T0547)P335 (2bi0A)E114 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2bi0A)G117 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 2bi0A 112 :RT T0547 336 :VL 2bi0A 115 :VV T0547 339 :LFS 2bi0A 118 :LRA Number of specific fragments extracted= 3 number of extra gaps= 2 total=96404 # 1jb0E.333.19 read from T0547.t06.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)A334 (1jb0E)G21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1jb0E)T22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :I 1jb0E 20 :V T0547 336 :VL 1jb0E 23 :VA T0547 339 :LFS 1jb0E 26 :VDQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=96407 # 3sil.333.186 read from T0547.t06.many.frag # found chain 3sil in training set T0547 333 :IAPVLELFS 3sil 190 :VFPVQMVRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=96408 # 2aneA.333.80 read from T0547.t06.many.frag # found chain 2aneA in template set Warning: unaligning (T0547)P335 (2aneA)S76 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 2aneA 74 :VA T0547 336 :VLELFS 2aneA 77 :ILQMLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=96410 # 1ieaB.333.145 read from T0547.t06.many.frag # found chain 1ieaB in template set Warning: unaligning (T0547)E338 (1ieaB)D121 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1ieaB)P124 because C (cis) conformation "forbidden" or filtered. T0547 333 :IAPVL 1ieaB 116 :VCSVS T0547 339 :LF 1ieaB 122 :FY Number of specific fragments extracted= 2 number of extra gaps= 2 total=96412 # 1i8dA.333.8 read from T0547.t06.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E338 (1i8dA)S14 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IAPVL 1i8dA 9 :TAKLV T0547 339 :LFS 1i8dA 15 :IDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=96414 # 1vie.333.22 read from T0547.t06.many.frag # found chain 1vie in training set Warning: unaligning (T0547)A334 (1vie)G40 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1vie)G44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1vie)W45 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :I 1vie 39 :Q T0547 335 :PVL 1vie 41 :QIV T0547 340 :FS 1vie 46 :YC Number of specific fragments extracted= 3 number of extra gaps= 2 total=96417 # 1f60A.333.244 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)A334 (1f60A)L246 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1f60A)D250 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :I 1f60A 245 :R T0547 335 :PVL 1f60A 247 :PLQ T0547 339 :LFS 1f60A 251 :VYK Number of specific fragments extracted= 3 number of extra gaps= 2 total=96420 # 2b3gA.333.26 read from T0547.t06.many.frag # found chain 2b3gA in training set Warning: unaligning (T0547)P335 (2b3gA)Q26 because E (beta_S) conformation "forbidden" or filtered. T0547 333 :IA 2b3gA 24 :IL T0547 336 :VLELFS 2b3gA 27 :VINIRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=96422 # 1bywA.333.83 read from T0547.t06.many.frag # found chain 1bywA in template set Warning: unaligning (T0547)P335 (1bywA)D111 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1bywA)V115 because D (zeta) conformation "forbidden" or filtered. T0547 333 :IA 1bywA 109 :LV T0547 336 :VLE 1bywA 112 :VVP T0547 340 :FS 1bywA 116 :KN Number of specific fragments extracted= 3 number of extra gaps= 2 total=96425 # 1vqoA.333.39 read from T0547.t06.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)P335 (1vqoA)T41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1vqoA)D44 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :IA 1vqoA 39 :AG T0547 336 :VL 1vqoA 42 :VV T0547 339 :LFS 1vqoA 45 :IEH Number of specific fragments extracted= 3 number of extra gaps= 2 total=96428 # 1y71A.333.23 read from T0547.t06.many.frag # found chain 1y71A in template set Warning: unaligning (T0547)A334 (1y71A)G22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1y71A)E23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1y71A)N26 because Y (epsilon') conformation "forbidden" or filtered. T0547 333 :I 1y71A 21 :I T0547 336 :VL 1y71A 24 :VT T0547 339 :LFS 1y71A 27 :SRP Number of specific fragments extracted= 3 number of extra gaps= 2 total=96431 # 1knwA.334.281 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E338 (1knwA)S286 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :APVL 1knwA 282 :TQVR T0547 339 :LFSQ 1knwA 287 :VKQM Number of specific fragments extracted= 2 number of extra gaps= 1 total=96433 # 7odcA.334.287 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A334 (7odcA)V288 because E (beta_S) conformation "forbidden" or filtered. T0547 335 :PVLELFSQ 7odcA 289 :NIIAKKTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=96434 # 1rcqA.334.236 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A334 (1rcqA)S237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1rcqA 239 :VISVRDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=96435 # 1pfbA.334.6 read from T0547.t06.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)P335 (1pfbA)K30 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :A 1pfbA 29 :E T0547 336 :VL 1pfbA 31 :II T0547 339 :LFSQ 1pfbA 34 :KRVK Number of specific fragments extracted= 3 number of extra gaps= 2 total=96438 # 1xjvA.334.160 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)A334 (1xjvA)C166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1xjvA 168 :LLGKAEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=96439 # 1fl0A.334.10 read from T0547.t06.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1fl0A 160 :G T0547 336 :VLELFSQ 1fl0A 162 :IITARKH Number of specific fragments extracted= 2 number of extra gaps= 1 total=96441 # 1br9.334.20 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :A 1br9 21 :A T0547 336 :VL 1br9 23 :AV T0547 339 :LFSQ 1br9 26 :EKEV Number of specific fragments extracted= 3 number of extra gaps= 2 total=96444 # 1l1oC.334.30 read from T0547.t06.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1l1oC 466 :A T0547 336 :VLELFSQ 1l1oC 468 :VVYLRKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=96446 # 1lmiA.334.25 read from T0547.t06.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :A 1lmiA 26 :W T0547 336 :V 1lmiA 28 :V T0547 338 :ELFSQ 1lmiA 30 :DLKSS Number of specific fragments extracted= 3 number of extra gaps= 2 total=96449 # 2f1lA.334.23 read from T0547.t06.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)A334 (2f1lA)G12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (2f1lA)K13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2f1lA)S16 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 2f1lA 14 :IV T0547 339 :LFSQ 2f1lA 17 :VYGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=96451 # 1c8uA.334.74 read from T0547.t06.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F340 (1c8uA)R82 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :A 1c8uA 76 :Y T0547 336 :VLEL 1c8uA 78 :VETL T0547 341 :SQ 1c8uA 83 :DG Number of specific fragments extracted= 3 number of extra gaps= 2 total=96454 # 1te0A.334.22 read from T0547.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)A334 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)L66 Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)L66 T0547 335 :PVLEL 1te0A 60 :NVYNR T0547 342 :Q 1te0A 67 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=96456 # 1wckA.334.135 read from T0547.t06.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)A334 (1wckA)I136 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1wckA 138 :VIANTAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=96457 # 1zd7A.334.124 read from T0547.t06.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)E338 (1zd7A)G129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1zd7A)R130 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :APVL 1zd7A 125 :VKVI T0547 340 :FSQ 1zd7A 131 :RSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96459 # 1jb0E.334.20 read from T0547.t06.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)P335 (1jb0E)T22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :A 1jb0E 21 :G T0547 336 :VL 1jb0E 23 :VA T0547 339 :LFSQ 1jb0E 26 :VDQT Number of specific fragments extracted= 3 number of extra gaps= 2 total=96462 # 1i8dA.334.9 read from T0547.t06.many.frag # found chain 1i8dA in template set T0547 334 :APVLELFSQ 1i8dA 10 :AKLVSIDEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=96463 # 3sil.334.187 read from T0547.t06.many.frag # found chain 3sil in training set T0547 334 :APVLELFSQ 3sil 191 :FPVQMVRTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=96464 # 1n7zA.334.130 read from T0547.t06.many.frag # found chain 1n7zA in template set Warning: unaligning (T0547)A334 (1n7zA)Y131 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P335 (1n7zA)R132 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1n7zA 133 :CLDVPDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=96465 # 1f60A.334.245 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)A334 (1f60A)L246 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1f60A)D250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1f60A)K253 because D (zeta) conformation "forbidden" or filtered. T0547 335 :PVL 1f60A 247 :PLQ T0547 339 :LF 1f60A 251 :VY T0547 342 :Q 1f60A 254 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=96468 # 2bi0A.334.112 read from T0547.t06.many.frag # found chain 2bi0A in template set Warning: unaligning (T0547)P335 (2bi0A)E114 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2bi0A)G117 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :A 2bi0A 113 :T T0547 336 :VL 2bi0A 115 :VV T0547 339 :LFSQ 2bi0A 118 :LRAN Number of specific fragments extracted= 3 number of extra gaps= 2 total=96471 # 1x6oA.334.48 read from T0547.t06.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)P335 (1x6oA)K42 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1x6oA 41 :C T0547 336 :VLELFSQ 1x6oA 43 :VIDLSVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=96473 # 1vie.334.23 read from T0547.t06.many.frag # found chain 1vie in training set Warning: unaligning (T0547)A334 (1vie)G40 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1vie)W45 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1vie)T48 because Y (epsilon') conformation "forbidden" or filtered. T0547 335 :PVLE 1vie 41 :QIVG T0547 340 :FS 1vie 46 :YC Number of specific fragments extracted= 2 number of extra gaps= 3 total=96475 # 1z6fA.334.236 read from T0547.t06.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)P335 (1z6fA)A238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1z6fA)G241 because L (left) conformation "forbidden" or filtered. T0547 334 :A 1z6fA 237 :S T0547 336 :VL 1z6fA 239 :VM T0547 339 :LFSQ 1z6fA 242 :GRTF Number of specific fragments extracted= 3 number of extra gaps= 2 total=96478 # 1x89A.334.63 read from T0547.t06.many.frag # found chain 1x89A in template set Warning: unaligning (T0547)E338 (1x89A)S68 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :APVL 1x89A 64 :YNVT T0547 339 :LFSQ 1x89A 69 :VLFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=96480 # 1go3E.334.45 read from T0547.t06.many.frag # found chain 1go3E in training set Warning: unaligning (T0547)P335 (1go3E)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :A 1go3E 46 :L T0547 336 :VLELFSQ 1go3E 48 :IVDVKDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=96482 # 1n4wA.334.242 read from T0547.t06.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)P335 (1n4wA)Q249 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 1n4wA 248 :H T0547 336 :VLELFSQ 1n4wA 250 :VKTIRQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=96484 # 1cewI.334.36 read from T0547.t06.many.frag # found chain 1cewI in template set Warning: unaligning (T0547)P335 (1cewI)R46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 because of BadResidue code BAD_PEPTIDE in next template residue (1cewI)S49 Warning: unaligning (T0547)E338 because of BadResidue code BAD_PEPTIDE at template residue (1cewI)S49 T0547 334 :A 1cewI 45 :V T0547 336 :V 1cewI 47 :V T0547 339 :LFSQ 1cewI 50 :AKRQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=96487 # 2b3gA.334.27 read from T0547.t06.many.frag # found chain 2b3gA in training set Warning: unaligning (T0547)P335 (2b3gA)Q26 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :A 2b3gA 25 :L T0547 336 :VLELFSQ 2b3gA 27 :VINIRPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=96489 # 1vqoA.334.40 read from T0547.t06.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)P335 (1vqoA)T41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1vqoA)D44 because Y (epsilon') conformation "forbidden" or filtered. T0547 334 :A 1vqoA 40 :G T0547 336 :VL 1vqoA 42 :VV T0547 339 :LFSQ 1vqoA 45 :IEHD Number of specific fragments extracted= 3 number of extra gaps= 2 total=96492 # 1w4sA.334.46 read from T0547.t06.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)E338 (1w4sA)R980 because E (beta_S) conformation "forbidden" or filtered. T0547 334 :APVL 1w4sA 976 :VCIE T0547 339 :LFSQ 1w4sA 981 :LWED Number of specific fragments extracted= 2 number of extra gaps= 1 total=96494 # 1knwA.335.282 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E343 (1knwA)G291 because S (epsilon) conformation "forbidden" or filtered. T0547 335 :PVLELFSQ 1knwA 283 :QVRSVKQM Number of specific fragments extracted= 1 number of extra gaps= 1 total=96495 # 1rcqA.335.237 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)P335 (1rcqA)K238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1rcqA)L245 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFS 1rcqA 239 :VISVRD T0547 343 :E 1rcqA 246 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=96497 # 7odcA.335.288 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 T0547 335 :PVLELFSQ 7odcA 289 :NIIAKKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=96498 # 1pfbA.335.7 read from T0547.t06.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)P335 (1pfbA)K30 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. T0547 336 :VL 1pfbA 31 :II T0547 339 :LFSQ 1pfbA 34 :KRVK Number of specific fragments extracted= 2 number of extra gaps= 3 total=96500 # 1xjvA.335.161 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)P335 (1xjvA)Q167 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1xjvA 168 :LLGKAEVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=96501 # 1fl0A.335.11 read from T0547.t06.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)P335 (1fl0A)C161 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1fl0A 162 :IITARKHP Number of specific fragments extracted= 1 number of extra gaps= 1 total=96502 # 1br9.335.21 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P335 (1br9)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1br9 23 :AV T0547 339 :LFSQE 1br9 26 :EKEVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=96504 # 1zd7A.335.125 read from T0547.t06.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)E338 (1zd7A)G129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1zd7A)G134 because S (epsilon) conformation "forbidden" or filtered. T0547 335 :PVL 1zd7A 126 :KVI T0547 339 :LFSQ 1zd7A 130 :RRSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=96506 # 2f1lA.335.24 read from T0547.t06.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)P335 (2f1lA)K13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2f1lA)S16 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 2f1lA 14 :IV T0547 339 :LFSQE 2f1lA 17 :VYGIR Number of specific fragments extracted= 2 number of extra gaps= 2 total=96508 # 1i8dA.335.10 read from T0547.t06.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)Q342 (1i8dA)K18 because E (beta_S) conformation "forbidden" or filtered. T0547 335 :PVLELFS 1i8dA 11 :KLVSIDE T0547 343 :E 1i8dA 19 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=96510 # 1jb0E.335.21 read from T0547.t06.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)P335 (1jb0E)T22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1jb0E)P30 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VL 1jb0E 23 :VA T0547 339 :LFSQ 1jb0E 26 :VDQT Number of specific fragments extracted= 2 number of extra gaps= 3 total=96512 # 1f60A.335.246 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E338 (1f60A)D250 because Y (epsilon') conformation "forbidden" or filtered. T0547 335 :PVL 1f60A 247 :PLQ T0547 339 :LFSQE 1f60A 251 :VYKIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=96514 # 1l1oC.335.31 read from T0547.t06.many.frag # found chain 1l1oC in template set Warning: unaligning (T0547)P335 (1l1oC)T467 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1l1oC)K473 because G (3-10) conformation "forbidden" or filtered. T0547 336 :VLELF 1l1oC 468 :VVYLR T0547 342 :QE 1l1oC 474 :EN Number of specific fragments extracted= 2 number of extra gaps= 2 total=96516 # 1vie.335.24 read from T0547.t06.many.frag # found chain 1vie in training set Warning: unaligning (T0547)E338 (1vie)G44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1vie)W45 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1vie)T48 because Y (epsilon') conformation "forbidden" or filtered. T0547 335 :PVL 1vie 41 :QIV T0547 340 :FS 1vie 46 :YC T0547 343 :E 1vie 49 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=96519 # 1te0A.335.23 read from T0547.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)F340 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)L66 Warning: unaligning (T0547)S341 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)L66 T0547 335 :PVLEL 1te0A 60 :NVYNR T0547 342 :QE 1te0A 67 :NT Number of specific fragments extracted= 2 number of extra gaps= 1 total=96521 # 1lmiA.335.26 read from T0547.t06.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P335 (1lmiA)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L337 (1lmiA)S29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. T0547 336 :V 1lmiA 28 :V T0547 339 :LFSQE 1lmiA 31 :LKSST Number of specific fragments extracted= 2 number of extra gaps= 2 total=96523 # 1c8uA.335.75 read from T0547.t06.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)P335 (1c8uA)D77 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1c8uA 78 :VETLRDGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=96524 # 1x89A.335.64 read from T0547.t06.many.frag # found chain 1x89A in template set Warning: unaligning (T0547)E343 (1x89A)K73 because L (left) conformation "forbidden" or filtered. T0547 335 :PVLELFSQ 1x89A 65 :NVTSVLFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=96525 # 1wckA.335.136 read from T0547.t06.many.frag # found chain 1wckA in training set Warning: unaligning (T0547)P335 (1wckA)T137 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1wckA)A140 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VL 1wckA 138 :VI T0547 339 :LFSQE 1wckA 141 :NTATA Number of specific fragments extracted= 2 number of extra gaps= 2 total=96527 # 1z6fA.335.237 read from T0547.t06.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)P335 (1z6fA)A238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1z6fA)G241 because L (left) conformation "forbidden" or filtered. T0547 336 :VL 1z6fA 239 :VM T0547 339 :LFSQE 1z6fA 242 :GRTFK Number of specific fragments extracted= 2 number of extra gaps= 2 total=96529 # 3sil.335.188 read from T0547.t06.many.frag # found chain 3sil in training set T0547 335 :PVLELFSQE 3sil 192 :PVQMVRTKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=96530 # 2bi0A.335.113 read from T0547.t06.many.frag # found chain 2bi0A in template set Warning: unaligning (T0547)P335 (2bi0A)E114 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (2bi0A)G117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (2bi0A)N121 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VL 2bi0A 115 :VV T0547 339 :LFS 2bi0A 118 :LRA T0547 343 :E 2bi0A 122 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=96533 # 1x6oA.335.49 read from T0547.t06.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)P335 (1x6oA)K42 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1x6oA 43 :VIDLSVSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=96534 # 1nqeA.335.152 read from T0547.t06.many.frag # found chain 1nqeA in template set Warning: unaligning (T0547)P335 (1nqeA)D153 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1nqeA)G161 because S (epsilon) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1nqeA 154 :VSTQQQL Number of specific fragments extracted= 1 number of extra gaps= 2 total=96535 # 1ntvA.335.22 read from T0547.t06.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)P335 (1ntvA)K45 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1ntvA 46 :LIGIDEVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=96536 # 1ucdA.335.163 read from T0547.t06.many.frag # found chain 1ucdA in training set Warning: unaligning (T0547)P335 (1ucdA)Q164 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1ucdA 165 :VVACFAQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=96537 # 1n4wA.335.243 read from T0547.t06.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)P335 (1n4wA)Q249 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VLELFSQE 1n4wA 250 :VKTIRQTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=96538 # 1vqoA.335.41 read from T0547.t06.many.frag # found chain 1vqoA in template set Warning: unaligning (T0547)P335 (1vqoA)T41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E338 (1vqoA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1vqoA)H47 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VL 1vqoA 42 :VV T0547 339 :LF 1vqoA 45 :IE T0547 342 :QE 1vqoA 48 :DP Number of specific fragments extracted= 3 number of extra gaps= 3 total=96541 # 1v8qA.335.64 read from T0547.t06.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)P335 (1v8qA)G65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1v8qA)D71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1v8qA)G73 because S (epsilon) conformation "forbidden" or filtered. T0547 336 :VLELF 1v8qA 66 :VVEFQ T0547 342 :Q 1v8qA 72 :R Number of specific fragments extracted= 2 number of extra gaps= 3 total=96543 # 1jovA.335.40 read from T0547.t06.many.frag # found chain 1jovA in training set T0547 335 :PVLELFSQE 1jovA 41 :QLISWKPQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=96544 # 1knwA.336.283 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E343 (1knwA)G291 because S (epsilon) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1knwA 284 :VRSVKQM T0547 344 :Y 1knwA 292 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=96546 # 1xjvA.336.162 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)S341 (1xjvA)E173 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VLELF 1xjvA 168 :LLGKA T0547 342 :QEY 1xjvA 174 :VDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=96548 # 1pfbA.336.8 read from T0547.t06.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1pfbA 31 :II T0547 339 :LFSQEY 1pfbA 34 :KRVKKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=96550 # 1rcqA.336.238 read from T0547.t06.many.frag # found chain 1rcqA in training set T0547 336 :VLELFSQEY 1rcqA 239 :VISVRDLPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=96551 # 1fl0A.336.12 read from T0547.t06.many.frag # found chain 1fl0A in training set T0547 336 :VLELFSQEY 1fl0A 162 :IITARKHPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=96552 # 1i8dA.336.11 read from T0547.t06.many.frag # found chain 1i8dA in template set T0547 336 :VLELFSQEY 1i8dA 12 :LVSIDEKPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=96553 # 1zd7A.336.126 read from T0547.t06.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)L339 (1zd7A)R130 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VLE 1zd7A 127 :VIG T0547 340 :FSQEY 1zd7A 131 :RSLGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96555 # 7odcA.336.289 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E338 (7odcA)A292 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (7odcA)E311 T0547 336 :VL 7odcA 290 :II T0547 339 :LFSQ 7odcA 293 :KKTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96557 # 1f60A.336.247 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E338 (1f60A)D250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1f60A)G256 because T (delta_L) conformation "forbidden" or filtered. T0547 336 :VL 1f60A 248 :LQ T0547 339 :LFSQE 1f60A 251 :VYKIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=96559 # 2f1lA.336.25 read from T0547.t06.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)E338 (2f1lA)S16 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (2f1lA)G19 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (2f1lA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 336 :VL 2f1lA 14 :IV T0547 339 :LF 2f1lA 17 :VY T0547 342 :QE 2f1lA 20 :IR Number of specific fragments extracted= 3 number of extra gaps= 3 total=96562 # 1n4wA.336.244 read from T0547.t06.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)E338 (1n4wA)T252 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1n4wA)T256 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VL 1n4wA 250 :VK T0547 339 :LFS 1n4wA 253 :IRQ T0547 343 :EY 1n4wA 257 :KD Number of specific fragments extracted= 3 number of extra gaps= 2 total=96565 # 1jb0E.336.22 read from T0547.t06.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)E343 (1jb0E)P30 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1jb0E 23 :VASVDQT T0547 344 :Y 1jb0E 31 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=96567 # 1nqeA.336.153 read from T0547.t06.many.frag # found chain 1nqeA in template set T0547 336 :VLELFSQEY 1nqeA 154 :VSTQQQLGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=96568 # 1gmlA.336.140 read from T0547.t06.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)E338 (1gmlA)E351 because E (beta_S) conformation "forbidden" or filtered. T0547 336 :VL 1gmlA 349 :LL T0547 339 :LFSQEY 1gmlA 352 :IKKIGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=96570 # 1ntvA.336.23 read from T0547.t06.many.frag # found chain 1ntvA in training set T0547 336 :VLELFSQEY 1ntvA 46 :LIGIDEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=96571 # 1wwhA.336.49 read from T0547.t06.many.frag # found chain 1wwhA in template set Warning: unaligning (T0547)E338 (1wwhA)K200 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1wwhA 198 :IL T0547 339 :LFSQEY 1wwhA 201 :HVMSNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=96573 # 1x89A.336.65 read from T0547.t06.many.frag # found chain 1x89A in template set Warning: unaligning (T0547)E338 (1x89A)S68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1x89A)K73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1x89A)K74 because T (delta_L) conformation "forbidden" or filtered. T0547 336 :VL 1x89A 66 :VT T0547 339 :LFSQ 1x89A 69 :VLFR Number of specific fragments extracted= 2 number of extra gaps= 2 total=96575 # 1v8qA.336.65 read from T0547.t06.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)E343 (1v8qA)G73 because S (epsilon) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1v8qA 66 :VVEFQDR T0547 344 :Y 1v8qA 74 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=96577 # 1el6A.336.142 read from T0547.t06.many.frag # found chain 1el6A in template set Warning: unaligning (T0547)E338 (1el6A)S145 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1el6A 143 :IN T0547 339 :LFSQEY 1el6A 146 :YKDHPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=96579 # 1br9.336.22 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)E338 (1br9)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1br9 23 :AV T0547 339 :LFSQEY 1br9 26 :EKEVDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=96581 # 1r7mA.336.185 read from T0547.t06.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)E338 (1r7mA)Y188 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1r7mA)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. T0547 336 :VL 1r7mA 186 :NC T0547 339 :LFSQ 1r7mA 189 :VKIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=96583 # 1vie.336.25 read from T0547.t06.many.frag # found chain 1vie in training set Warning: unaligning (T0547)E338 (1vie)G44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L339 (1vie)W45 because Y (epsilon') conformation "forbidden" or filtered. T0547 336 :VL 1vie 42 :IV T0547 340 :FSQEY 1vie 46 :YCTNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96585 # 3prn.336.34 read from T0547.t06.many.frag # found chain 3prn in template set Warning: unaligning (T0547)S341 (3prn)E40 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VLELF 3prn 35 :IVGTT T0547 342 :QEY 3prn 41 :TDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=96587 # 1t6sA.336.136 read from T0547.t06.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)E338 (1t6sA)G139 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1t6sA)S143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1t6sA)P144 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VL 1t6sA 137 :VR T0547 339 :LFS 1t6sA 140 :RAD T0547 344 :Y 1t6sA 145 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=96590 # 1o59A.336.148 read from T0547.t06.many.frag # found chain 1o59A in template set T0547 336 :VLELFSQEY 1o59A 137 :IVEKFECGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=96591 # 2aqjA.336.186 read from T0547.t06.many.frag # found chain 2aqjA in training set T0547 336 :VLELFSQEY 2aqjA 187 :VVDVRLNNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=96592 # 1ucdA.336.164 read from T0547.t06.many.frag # found chain 1ucdA in training set T0547 336 :VLELFSQEY 1ucdA 165 :VVACFAQDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=96593 # 1c8uA.336.76 read from T0547.t06.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)Q342 (1c8uA)G84 because P (beta_P) conformation "forbidden" or filtered. T0547 336 :VLELFS 1c8uA 78 :VETLRD T0547 343 :EY 1c8uA 85 :NS Number of specific fragments extracted= 2 number of extra gaps= 1 total=96595 # 1xqbA.336.106 read from T0547.t06.many.frag # found chain 1xqbA in template set Warning: unaligning (T0547)E343 (1xqbA)N114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1xqbA)G115 because L (left) conformation "forbidden" or filtered. T0547 336 :VLELFSQ 1xqbA 107 :LRQVECI Number of specific fragments extracted= 1 number of extra gaps= 1 total=96596 # 1w4sA.336.48 read from T0547.t06.many.frag # found chain 1w4sA in training set T0547 336 :VLELFSQEY 1w4sA 978 :IERLWEDSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=96597 # 1knwA.337.284 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E343 (1knwA)G291 because S (epsilon) conformation "forbidden" or filtered. T0547 337 :LELFSQ 1knwA 285 :RSVKQM T0547 344 :YA 1knwA 292 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=96599 # 1xjvA.337.163 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)Y344 (1xjvA)G176 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :LELFSQE 1xjvA 169 :LGKAEVD T0547 345 :A 1xjvA 177 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=96601 # 1pfbA.337.9 read from T0547.t06.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. T0547 337 :L 1pfbA 32 :I T0547 339 :LFSQ 1pfbA 34 :KRVK T0547 344 :YA 1pfbA 39 :GV Number of specific fragments extracted= 3 number of extra gaps= 2 total=96604 # 1fl0A.337.13 read from T0547.t06.many.frag # found chain 1fl0A in training set T0547 337 :LELFSQEYA 1fl0A 163 :ITARKHPDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=96605 # 1r7mA.337.186 read from T0547.t06.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)E343 (1r7mA)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. T0547 337 :LELFSQ 1r7mA 187 :CYVKIN T0547 345 :A 1r7mA 195 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=96607 # 1jb0E.337.23 read from T0547.t06.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :L 1jb0E 24 :A T0547 339 :LFSQEYA 1jb0E 26 :VDQTPGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96609 # 1gmlA.337.141 read from T0547.t06.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)Y344 (1gmlA)D357 because G (3-10) conformation "forbidden" or filtered. T0547 337 :LELFSQE 1gmlA 350 :LEIKKIG T0547 345 :A 1gmlA 358 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=96611 # 1wwhA.337.50 read from T0547.t06.many.frag # found chain 1wwhA in template set Warning: unaligning (T0547)E338 (1wwhA)K200 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :L 1wwhA 199 :L T0547 339 :LFSQEYA 1wwhA 201 :HVMSNTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=96613 # 1f60A.337.248 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E338 (1f60A)D250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1f60A)G256 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :L 1f60A 249 :Q T0547 339 :LFSQE 1f60A 251 :VYKIG T0547 345 :A 1f60A 257 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=96616 # 1i8dA.337.12 read from T0547.t06.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E338 (1i8dA)S14 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1i8dA)F21 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :L 1i8dA 13 :V T0547 339 :LFSQEY 1i8dA 15 :IDEKPN Number of specific fragments extracted= 2 number of extra gaps= 2 total=96618 # 1n4wA.337.245 read from T0547.t06.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)A345 (1n4wA)G259 because S (epsilon) conformation "forbidden" or filtered. T0547 337 :LELFSQEY 1n4wA 251 :KTIRQTKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=96619 # 1xqbA.337.107 read from T0547.t06.many.frag # found chain 1xqbA in template set Warning: unaligning (T0547)Q342 (1xqbA)I113 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1xqbA)G115 because L (left) conformation "forbidden" or filtered. T0547 337 :LELFS 1xqbA 108 :RQVEC T0547 343 :E 1xqbA 114 :N T0547 345 :A 1xqbA 116 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=96622 # 1nqeA.337.154 read from T0547.t06.many.frag # found chain 1nqeA in template set Warning: unaligning (T0547)S341 (1nqeA)Q159 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1nqeA)G161 because S (epsilon) conformation "forbidden" or filtered. T0547 337 :LELF 1nqeA 155 :STQQ T0547 342 :Q 1nqeA 160 :L T0547 344 :YA 1nqeA 162 :DK Number of specific fragments extracted= 3 number of extra gaps= 2 total=96625 # 1zd7A.337.127 read from T0547.t06.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)L339 (1zd7A)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1zd7A)G134 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1zd7A)Q136 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :LE 1zd7A 128 :IG T0547 340 :FSQ 1zd7A 131 :RSL T0547 344 :Y 1zd7A 135 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=96628 # 1w4sA.337.49 read from T0547.t06.many.frag # found chain 1w4sA in training set T0547 337 :LELFSQEYA 1w4sA 979 :ERLWEDSAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=96629 # 1rcqA.337.239 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)A345 (1rcqA)G248 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :LELFSQEY 1rcqA 240 :ISVRDLPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=96630 # 1yqyA.337.274 read from T0547.t06.many.frag # found chain 1yqyA in template set Warning: unaligning (T0547)Q342 (1yqyA)Q537 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1yqyA)S538 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1yqyA)E539 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :LELFS 1yqyA 532 :VQIIK T0547 345 :A 1yqyA 540 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=96632 # 1t6sA.337.137 read from T0547.t06.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)E338 (1t6sA)G139 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :L 1t6sA 138 :R T0547 339 :LFSQEYA 1t6sA 140 :RADSPGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=96634 # 1el6A.337.143 read from T0547.t06.many.frag # found chain 1el6A in template set Warning: unaligning (T0547)E338 (1el6A)S145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1el6A)D148 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1el6A)D152 because E (beta_S) conformation "forbidden" or filtered. T0547 337 :L 1el6A 144 :N T0547 339 :LF 1el6A 146 :YK T0547 342 :QEY 1el6A 149 :HPT Number of specific fragments extracted= 3 number of extra gaps= 3 total=96637 # 1v8qA.337.66 read from T0547.t06.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)E338 (1v8qA)E68 because E (beta_S) conformation "forbidden" or filtered. T0547 337 :L 1v8qA 67 :V T0547 339 :LFSQEYA 1v8qA 69 :FQDRGRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96639 # 2f1lA.337.26 read from T0547.t06.many.frag # found chain 2f1lA in template set Warning: unaligning (T0547)Y344 (2f1lA)G22 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :LELFSQE 2f1lA 15 :VSVYGIR T0547 345 :A 2f1lA 23 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=96641 # 2arcA.337.47 read from T0547.t06.many.frag # found chain 2arcA in training set T0547 337 :LELFSQEYA 2arcA 54 :QGVVKNQGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=96642 # 1xxaA.337.8 read from T0547.t06.many.frag # found chain 1xxaA in template set Warning: unaligning (T0547)E338 (1xxaA)D88 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1xxaA)V95 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :L 1xxaA 87 :L T0547 339 :LFSQEY 1xxaA 89 :IDYNDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=96644 # 1dfuP.337.74 read from T0547.t06.many.frag # found chain 1dfuP in training set Warning: unaligning (T0547)E338 (1dfuP)D76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1dfuP)H80 because P (beta_P) conformation "forbidden" or filtered. T0547 337 :L 1dfuP 75 :Q T0547 339 :LFS 1dfuP 77 :VQR T0547 343 :EYA 1dfuP 81 :PYK Number of specific fragments extracted= 3 number of extra gaps= 2 total=96647 # 1qs1A.337.244 read from T0547.t06.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)E343 (1qs1A)K251 because L (left) conformation "forbidden" or filtered. T0547 337 :LELFSQ 1qs1A 245 :VSKVVK T0547 344 :YA 1qs1A 252 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96649 # 1c4qA.337.9 read from T0547.t06.many.frag # found chain 1c4qA in training set Warning: unaligning (T0547)E338 (1c4qA)Y111 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :L 1c4qA 110 :E T0547 339 :LFSQEYA 1c4qA 112 :TKYNDDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=96651 # 1jovA.337.42 read from T0547.t06.many.frag # found chain 1jovA in training set Warning: unaligning (T0547)Q342 (1jovA)Q48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1jovA)N49 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :LELFS 1jovA 43 :ISWKP T0547 344 :YA 1jovA 50 :AK Number of specific fragments extracted= 2 number of extra gaps= 1 total=96653 # 3bamA.337.95 read from T0547.t06.many.frag # found chain 3bamA in training set T0547 337 :LELFSQEYA 3bamA 96 :YKEFIENSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=96654 # 1ntvA.337.24 read from T0547.t06.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)E338 (1ntvA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0547 337 :L 1ntvA 47 :I T0547 339 :LFSQEYA 1ntvA 49 :IDEVSAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=96656 # 1iznA.337.142 read from T0547.t06.many.frag # found chain 1iznA in template set Warning: unaligning (T0547)E338 (1iznA)Y144 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1iznA)D149 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1iznA)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 337 :L 1iznA 143 :V T0547 339 :LFSQ 1iznA 145 :GKSI T0547 345 :A 1iznA 151 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=96659 # 1knwA.338.285 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E343 (1knwA)G291 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1knwA)H294 because N (gamma') conformation "forbidden" or filtered. T0547 338 :ELFSQ 1knwA 286 :SVKQM T0547 344 :YA 1knwA 292 :SR Number of specific fragments extracted= 2 number of extra gaps= 2 total=96661 # 1r7mA.338.187 read from T0547.t06.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)E343 (1r7mA)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. T0547 338 :ELFSQ 1r7mA 188 :YVKIN T0547 345 :AE 1r7mA 195 :KP Number of specific fragments extracted= 2 number of extra gaps= 1 total=96663 # 1xjvA.338.164 read from T0547.t06.many.frag # found chain 1xjvA in training set T0547 338 :ELFSQEYAE 1xjvA 170 :GKAEVDGAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=96664 # 1pfbA.338.10 read from T0547.t06.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E338 (1pfbA)Q33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1pfbA)V41 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFSQ 1pfbA 34 :KRVK T0547 344 :YA 1pfbA 39 :GV Number of specific fragments extracted= 2 number of extra gaps= 3 total=96666 # 1fl0A.338.14 read from T0547.t06.many.frag # found chain 1fl0A in training set T0547 338 :ELFSQEYAE 1fl0A 164 :TARKHPDAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=96667 # 1wwhA.338.51 read from T0547.t06.many.frag # found chain 1wwhA in template set T0547 338 :ELFSQEYAE 1wwhA 200 :KHVMSNTGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=96668 # 1gmlA.338.142 read from T0547.t06.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)E343 (1gmlA)G356 because S (epsilon) conformation "forbidden" or filtered. T0547 338 :ELFSQ 1gmlA 351 :EIKKI T0547 344 :YAE 1gmlA 357 :DEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=96670 # 1jb0E.338.24 read from T0547.t06.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)E338 (1jb0E)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1jb0E)T29 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFS 1jb0E 26 :VDQ T0547 343 :EYAE 1jb0E 30 :PGVK Number of specific fragments extracted= 2 number of extra gaps= 2 total=96672 # 1f60A.338.249 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E338 (1f60A)D250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (1f60A)K253 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1f60A)I254 because E (beta_S) conformation "forbidden" or filtered. T0547 339 :LF 1f60A 251 :VY T0547 343 :EYAE 1f60A 255 :GGIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=96674 # 1xqbA.338.108 read from T0547.t06.many.frag # found chain 1xqbA in template set Warning: unaligning (T0547)E343 (1xqbA)N114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1xqbA)G115 because L (left) conformation "forbidden" or filtered. T0547 338 :ELFSQ 1xqbA 109 :QVECI T0547 345 :AE 1xqbA 116 :NI Number of specific fragments extracted= 2 number of extra gaps= 1 total=96676 # 1yqyA.338.275 read from T0547.t06.many.frag # found chain 1yqyA in template set Warning: unaligning (T0547)Q342 (1yqyA)Q537 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1yqyA)S538 because L (left) conformation "forbidden" or filtered. T0547 338 :ELFS 1yqyA 533 :QIIK T0547 344 :YAE 1yqyA 539 :EKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=96678 # 1n4wA.338.246 read from T0547.t06.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)A345 (1n4wA)G259 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1n4wA)G260 because S (epsilon) conformation "forbidden" or filtered. T0547 338 :ELFSQEY 1n4wA 252 :TIRQTKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=96679 # 1t6sA.338.138 read from T0547.t06.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)E338 (1t6sA)G139 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1t6sA)P144 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1t6sA)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1t6sA)R146 because L (left) conformation "forbidden" or filtered. T0547 339 :LFSQ 1t6sA 140 :RADS T0547 346 :E 1t6sA 147 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=96681 # 2arcA.338.48 read from T0547.t06.many.frag # found chain 2arcA in training set T0547 338 :ELFSQEYAE 2arcA 55 :GVVKNQGRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=96682 # 1qs1A.338.245 read from T0547.t06.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)E338 (1qs1A)S246 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1qs1A)K251 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1qs1A)G252 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQ 1qs1A 247 :KVVK T0547 345 :AE 1qs1A 253 :VE Number of specific fragments extracted= 2 number of extra gaps= 2 total=96684 # 1w4sA.338.50 read from T0547.t06.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)A345 (1w4sA)G987 because T (delta_L) conformation "forbidden" or filtered. T0547 338 :ELFSQEY 1w4sA 980 :RLWEDSA T0547 346 :E 1w4sA 988 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=96686 # 1vraA.338.181 read from T0547.t06.many.frag # found chain 1vraA in template set Warning: unaligning (T0547)E343 (1vraA)N175 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1vraA)G176 because T (delta_L) conformation "forbidden" or filtered. T0547 338 :ELFSQ 1vraA 170 :YQTIV T0547 345 :AE 1vraA 177 :KT Number of specific fragments extracted= 2 number of extra gaps= 1 total=96688 # 3bamA.338.96 read from T0547.t06.many.frag # found chain 3bamA in training set Warning: unaligning (T0547)Y344 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. T0547 338 :ELFSQE 3bamA 97 :KEFIEN T0547 345 :AE 3bamA 104 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96690 # 1iznA.338.143 read from T0547.t06.many.frag # found chain 1iznA in template set Warning: unaligning (T0547)E338 (1iznA)Y144 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1iznA)D149 because L (left) conformation "forbidden" or filtered. T0547 339 :LFSQ 1iznA 145 :GKSI T0547 344 :YAE 1iznA 150 :GQQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=96692 # 2f6eA.338.12 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)E338 (2f6eA)G14 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S341 (2f6eA)I17 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (2f6eA)N22 because E (beta_S) conformation "forbidden" or filtered. T0547 339 :LF 2f6eA 15 :YK T0547 342 :QE 2f6eA 18 :ID T0547 345 :A 2f6eA 21 :K Number of specific fragments extracted= 3 number of extra gaps= 4 total=96695 1c52 expands to /projects/compbio/data/pdb/1c52.pdb.gz 1c52:Warning: there is no chain 1c52 will retry with 1c52A # 1c52.338.55 read from T0547.t06.many.frag # adding 1c52 to template set # found chain 1c52 in template set Warning: unaligning (T0547)E338 (1c52)G56 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1c52)K61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1c52)G62 because L (left) conformation "forbidden" or filtered. T0547 339 :LFSQ 1c52 57 :QIEV T0547 345 :AE 1c52 63 :MK Number of specific fragments extracted= 2 number of extra gaps= 2 total=96697 # 1nqeA.338.155 read from T0547.t06.many.frag # found chain 1nqeA in template set Warning: unaligning (T0547)E338 (1nqeA)T156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1nqeA)G161 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1nqeA)K163 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQ 1nqeA 157 :QQQL T0547 344 :Y 1nqeA 162 :D T0547 346 :E 1nqeA 164 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=96700 # 1dq3A.338.356 read from T0547.t06.many.frag # found chain 1dq3A in template set Warning: unaligning (T0547)E343 (1dq3A)G362 because S (epsilon) conformation "forbidden" or filtered. T0547 338 :ELFSQ 1dq3A 357 :EFKTN T0547 344 :YAE 1dq3A 363 :SQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=96702 # 1c4qA.338.10 read from T0547.t06.many.frag # found chain 1c4qA in training set Warning: unaligning (T0547)E338 (1c4qA)Y111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1c4qA)D118 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQEY 1c4qA 112 :TKYNDD T0547 346 :E 1c4qA 119 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=96704 # 1zd7A.338.128 read from T0547.t06.many.frag # found chain 1zd7A in training set Warning: unaligning (T0547)E343 (1zd7A)G134 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1zd7A)Q136 because Y (epsilon') conformation "forbidden" or filtered. T0547 338 :ELFSQ 1zd7A 129 :GRRSL T0547 344 :Y 1zd7A 135 :V T0547 346 :E 1zd7A 137 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=96707 # 1tg7A.338.455 read from T0547.t06.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)L339 (1tg7A)W497 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1tg7A)F500 because D (zeta) conformation "forbidden" or filtered. T0547 338 :E 1tg7A 496 :T T0547 340 :FS 1tg7A 498 :KK T0547 343 :EYAE 1tg7A 501 :NNEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=96710 # 1i8dA.338.13 read from T0547.t06.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E346 (1i8dA)R22 because E (beta_S) conformation "forbidden" or filtered. T0547 338 :ELFSQEYA 1i8dA 14 :SIDEKPNF Number of specific fragments extracted= 1 number of extra gaps= 1 total=96711 # 1v8qA.338.67 read from T0547.t06.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)E343 (1v8qA)G73 because S (epsilon) conformation "forbidden" or filtered. T0547 338 :ELFSQ 1v8qA 68 :EFQDR T0547 344 :YAE 1v8qA 74 :RLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=96713 # 1ynfA.338.318 read from T0547.t06.many.frag # found chain 1ynfA in template set Warning: unaligning (T0547)A345 (1ynfA)G315 because T (delta_L) conformation "forbidden" or filtered. T0547 338 :ELFSQEY 1ynfA 308 :QLLSRDD T0547 346 :E 1ynfA 316 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=96715 # 2fa1A.338.52 read from T0547.t06.many.frag # found chain 2fa1A in training set Warning: unaligning (T0547)E346 (2fa1A)A142 because P (beta_P) conformation "forbidden" or filtered. T0547 338 :ELFSQEYA 2fa1A 134 :TLRRVNGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=96716 # 1knwA.339.286 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A345 (1knwA)R293 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFSQEY 1knwA 287 :VKQMGS T0547 346 :EN 1knwA 294 :HF Number of specific fragments extracted= 2 number of extra gaps= 1 total=96718 # 1xjvA.339.165 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)E346 (1xjvA)S178 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1xjvA)F179 because E (beta_S) conformation "forbidden" or filtered. T0547 339 :LFSQEYA 1xjvA 171 :KAEVDGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=96719 # 1r7mA.339.188 read from T0547.t06.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)E343 (1r7mA)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1r7mA)K195 because E (beta_S) conformation "forbidden" or filtered. T0547 339 :LFSQ 1r7mA 189 :VKIN T0547 346 :EN 1r7mA 196 :PI Number of specific fragments extracted= 2 number of extra gaps= 1 total=96721 # 1gmlA.339.143 read from T0547.t06.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)Y344 (1gmlA)D357 because G (3-10) conformation "forbidden" or filtered. T0547 339 :LFSQE 1gmlA 352 :IKKIG T0547 345 :AEN 1gmlA 358 :EYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=96723 # 1fl0A.339.15 read from T0547.t06.many.frag # found chain 1fl0A in training set T0547 339 :LFSQEYAEN 1fl0A 165 :ARKHPDADS Number of specific fragments extracted= 1 number of extra gaps= 0 total=96724 # 1f60A.339.250 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)S341 (1f60A)K253 because D (zeta) conformation "forbidden" or filtered. T0547 339 :LF 1f60A 251 :VY T0547 342 :QEYAEN 1f60A 254 :IGGIGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=96726 # 1pfbA.339.11 read from T0547.t06.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1pfbA)G39 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQ 1pfbA 34 :KRVK T0547 345 :AEN 1pfbA 40 :VVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=96728 # 1jb0E.339.25 read from T0547.t06.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)S341 (1jb0E)Q28 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1jb0E)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LF 1jb0E 26 :VD T0547 342 :QE 1jb0E 29 :TP T0547 345 :AEN 1jb0E 32 :VKY Number of specific fragments extracted= 3 number of extra gaps= 2 total=96731 # 1t6sA.339.139 read from T0547.t06.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)Q342 (1t6sA)S143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1t6sA)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1t6sA)R146 because L (left) conformation "forbidden" or filtered. T0547 339 :LFS 1t6sA 140 :RAD T0547 343 :E 1t6sA 144 :P T0547 346 :EN 1t6sA 147 :PL Number of specific fragments extracted= 3 number of extra gaps= 2 total=96734 # 1vraA.339.182 read from T0547.t06.many.frag # found chain 1vraA in template set Warning: unaligning (T0547)F340 (1vraA)T172 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1vraA)K177 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :L 1vraA 171 :Q T0547 341 :SQEY 1vraA 173 :IVNG T0547 346 :EN 1vraA 178 :TV Number of specific fragments extracted= 3 number of extra gaps= 2 total=96737 # 2arcA.339.49 read from T0547.t06.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)E343 (2arcA)Q60 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (2arcA)G61 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (2arcA)R62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (2arcA)E63 because E (beta_S) conformation "forbidden" or filtered. T0547 339 :LFSQ 2arcA 56 :VVKN T0547 347 :N 2arcA 64 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=96739 # 1iznA.339.144 read from T0547.t06.many.frag # found chain 1iznA in template set Warning: unaligning (T0547)E343 (1iznA)D149 because L (left) conformation "forbidden" or filtered. T0547 339 :LFSQ 1iznA 145 :GKSI T0547 344 :YAEN 1iznA 150 :GQQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=96741 # 3bamA.339.97 read from T0547.t06.many.frag # found chain 3bamA in training set Warning: unaligning (T0547)Y344 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQE 3bamA 98 :EFIEN T0547 345 :AEN 3bamA 104 :ELK Number of specific fragments extracted= 2 number of extra gaps= 1 total=96743 # 1wwhA.339.52 read from T0547.t06.many.frag # found chain 1wwhA in template set Warning: unaligning (T0547)N347 (1wwhA)W209 because Y (epsilon') conformation "forbidden" or filtered. T0547 339 :LFSQEYAE 1wwhA 201 :HVMSNTGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=96744 # 1qs1A.339.246 read from T0547.t06.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)E343 (1qs1A)K251 because L (left) conformation "forbidden" or filtered. T0547 339 :LFSQ 1qs1A 247 :KVVK T0547 344 :YAEN 1qs1A 252 :GVEC Number of specific fragments extracted= 2 number of extra gaps= 1 total=96746 # 1xqbA.339.109 read from T0547.t06.many.frag # found chain 1xqbA in template set Warning: unaligning (T0547)E343 (1xqbA)N114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1xqbA)G115 because L (left) conformation "forbidden" or filtered. T0547 339 :LFSQ 1xqbA 110 :VECI T0547 345 :AEN 1xqbA 116 :NIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=96748 # 1c52.339.56 read from T0547.t06.many.frag # found chain 1c52 in template set Warning: unaligning (T0547)E343 (1c52)K61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1c52)G62 because L (left) conformation "forbidden" or filtered. T0547 339 :LFSQ 1c52 57 :QIEV T0547 345 :AEN 1c52 63 :MKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=96750 # 2f6eA.339.13 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)S341 (2f6eA)I17 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (2f6eA)D19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. T0547 339 :LF 2f6eA 15 :YK T0547 342 :Q 2f6eA 18 :I T0547 345 :AEN 2f6eA 21 :KNF Number of specific fragments extracted= 3 number of extra gaps= 2 total=96753 # 1yqyA.339.276 read from T0547.t06.many.frag # found chain 1yqyA in template set Warning: unaligning (T0547)E343 (1yqyA)S538 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1yqyA)E539 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQ 1yqyA 534 :IIKQ T0547 345 :AEN 1yqyA 540 :KEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=96755 # 1n4wA.339.247 read from T0547.t06.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)N347 (1n4wA)Y261 because E (beta_S) conformation "forbidden" or filtered. T0547 339 :LFSQEYAE 1n4wA 253 :IRQTKDGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=96756 # 1w4sA.339.51 read from T0547.t06.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)A345 (1w4sA)G987 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1w4sA)K989 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFSQEY 1w4sA 981 :LWEDSA T0547 346 :E 1w4sA 988 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=96758 # 1uc2A.339.335 read from T0547.t06.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)E343 (1uc2A)D340 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1uc2A)G341 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQ 1uc2A 336 :EHEV T0547 345 :AEN 1uc2A 342 :KRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96760 1y8xB expands to /projects/compbio/data/pdb/1y8x.pdb.gz 1y8xB:# 1y8xB.339.37 read from T0547.t06.many.frag # adding 1y8xB to template set # found chain 1y8xB in template set Warning: unaligning (T0547)Y344 (1y8xB)G387 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1y8xB)N389 because P (beta_P) conformation "forbidden" or filtered. T0547 339 :LFSQE 1y8xB 382 :TATLE T0547 345 :A 1y8xB 388 :K T0547 347 :N 1y8xB 390 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=96763 # 1nqeA.339.156 read from T0547.t06.many.frag # found chain 1nqeA in template set Warning: unaligning (T0547)A345 (1nqeA)K163 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQEY 1nqeA 157 :QQQLGD T0547 346 :EN 1nqeA 164 :TR Number of specific fragments extracted= 2 number of extra gaps= 1 total=96765 # 1omhA.339.127 read from T0547.t06.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)E343 (1omhA)Q132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1omhA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQ 1omhA 128 :RQKI T0547 345 :AEN 1omhA 134 :KTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=96767 # 1i27A.339.59 read from T0547.t06.many.frag # found chain 1i27A in training set Warning: unaligning (T0547)A345 (1i27A)K510 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1i27A)H512 because E (beta_S) conformation "forbidden" or filtered. T0547 339 :LFSQEY 1i27A 504 :RKMIND T0547 346 :E 1i27A 511 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=96769 # 2fa1A.339.53 read from T0547.t06.many.frag # found chain 2fa1A in training set Warning: unaligning (T0547)Q342 (2fa1A)V138 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (2fa1A)N139 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (2fa1A)G140 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFS 2fa1A 135 :LRR T0547 345 :AEN 2fa1A 141 :VAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96771 # 1p9yA.339.7 read from T0547.t06.many.frag # found chain 1p9yA in template set Warning: unaligning (T0547)Y344 (1p9yA)G10 because S (epsilon) conformation "forbidden" or filtered. T0547 339 :LFSQE 1p9yA 5 :VETTQ T0547 345 :AEN 1p9yA 11 :LGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=96773 # 1bob.339.125 read from T0547.t06.many.frag # found chain 1bob in template set Warning: unaligning (T0547)Y344 (1bob)G131 because T (delta_L) conformation "forbidden" or filtered. T0547 339 :LFSQE 1bob 126 :EYSLN T0547 345 :AEN 1bob 132 :EEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=96775 # 1c4qA.339.11 read from T0547.t06.many.frag # found chain 1c4qA in training set T0547 339 :LFSQEYAEN 1c4qA 112 :TKYNDDDTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=96776 # 1gmlA.340.144 read from T0547.t06.many.frag # found chain 1gmlA in template set T0547 340 :FSQEYAENK 1gmlA 353 :KKIGDEYFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=96777 # 1xjvA.340.166 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)Y344 (1xjvA)G176 because T (delta_L) conformation "forbidden" or filtered. T0547 340 :FSQE 1xjvA 172 :AEVD T0547 345 :AENK 1xjvA 177 :ASFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96779 # 1jb0E.340.26 read from T0547.t06.many.frag # found chain 1jb0E in template set T0547 340 :FSQEYAENK 1jb0E 27 :DQTPGVKYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=96780 # 1fl0A.340.16 read from T0547.t06.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)F340 (1fl0A)R166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q342 (1fl0A)H168 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1fl0A)D170 because G (3-10) conformation "forbidden" or filtered. T0547 341 :S 1fl0A 167 :K T0547 343 :E 1fl0A 169 :P T0547 345 :AENK 1fl0A 171 :ADSL Number of specific fragments extracted= 3 number of extra gaps= 3 total=96783 # 1r7mA.340.189 read from T0547.t06.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)E343 (1r7mA)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. T0547 340 :FSQ 1r7mA 190 :KIN T0547 345 :AENK 1r7mA 195 :KPII Number of specific fragments extracted= 2 number of extra gaps= 1 total=96785 # 2arcA.340.50 read from T0547.t06.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)E343 (2arcA)Q60 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (2arcA)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 340 :FSQ 2arcA 57 :VKN T0547 345 :AENK 2arcA 62 :REFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96787 # 1t6sA.340.140 read from T0547.t06.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)Q342 (1t6sA)S143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1t6sA)P144 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1t6sA)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1t6sA)R146 because L (left) conformation "forbidden" or filtered. T0547 340 :FS 1t6sA 141 :AD T0547 346 :ENK 1t6sA 147 :PLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=96789 # 3bamA.340.98 read from T0547.t06.many.frag # found chain 3bamA in training set T0547 340 :FSQEYAENK 3bamA 99 :FIENSELKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=96790 # 1knwA.340.287 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Y344 (1knwA)S292 because G (3-10) conformation "forbidden" or filtered. T0547 340 :FSQE 1knwA 288 :KQMG T0547 345 :AENK 1knwA 293 :RHFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96792 # 1f60A.340.251 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)E346 (1f60A)G258 because S (epsilon) conformation "forbidden" or filtered. T0547 340 :FSQEYA 1f60A 252 :YKIGGI T0547 347 :NK 1f60A 259 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96794 # 1vraA.340.183 read from T0547.t06.many.frag # found chain 1vraA in template set Warning: unaligning (T0547)Y344 (1vraA)G176 because T (delta_L) conformation "forbidden" or filtered. T0547 340 :FSQE 1vraA 172 :TIVN T0547 345 :AENK 1vraA 177 :KTVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=96796 # 1pfbA.340.12 read from T0547.t06.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1pfbA)G39 because T (delta_L) conformation "forbidden" or filtered. T0547 340 :FSQ 1pfbA 35 :RVK T0547 345 :AENK 1pfbA 40 :VVEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=96798 # 1iznA.340.145 read from T0547.t06.many.frag # found chain 1iznA in template set Warning: unaligning (T0547)E343 (1iznA)D149 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1iznA)T153 because E (beta_S) conformation "forbidden" or filtered. T0547 340 :FSQ 1iznA 146 :KSI T0547 344 :YAE 1iznA 150 :GQQ T0547 348 :K 1iznA 154 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=96801 # 1qs1A.340.247 read from T0547.t06.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)E343 (1qs1A)K251 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1qs1A)E254 because P (beta_P) conformation "forbidden" or filtered. T0547 340 :FSQ 1qs1A 248 :VVK T0547 344 :YA 1qs1A 252 :GV T0547 347 :NK 1qs1A 255 :CL Number of specific fragments extracted= 3 number of extra gaps= 2 total=96804 # 1y8xB.340.38 read from T0547.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0547)E343 (1y8xB)E386 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1y8xB)G387 because T (delta_L) conformation "forbidden" or filtered. T0547 340 :FSQ 1y8xB 383 :ATL T0547 345 :AENK 1y8xB 388 :KNRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=96806 # 1bob.340.126 read from T0547.t06.many.frag # found chain 1bob in template set Warning: unaligning (T0547)Y344 (1bob)G131 because T (delta_L) conformation "forbidden" or filtered. T0547 340 :FSQE 1bob 127 :YSLN T0547 345 :AENK 1bob 132 :EEFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96808 # 1w4sA.340.52 read from T0547.t06.many.frag # found chain 1w4sA in training set T0547 340 :FSQEYAENK 1w4sA 982 :WEDSAGEKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=96809 # 1wwhA.340.53 read from T0547.t06.many.frag # found chain 1wwhA in template set Warning: unaligning (T0547)N347 (1wwhA)W209 because Y (epsilon') conformation "forbidden" or filtered. T0547 340 :FSQEYAE 1wwhA 202 :VMSNTGN T0547 348 :K 1wwhA 210 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=96811 # 1c52.340.57 read from T0547.t06.many.frag # found chain 1c52 in template set Warning: unaligning (T0547)Y344 (1c52)G62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1c52)M63 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1c52)K64 because P (beta_P) conformation "forbidden" or filtered. T0547 340 :FSQE 1c52 58 :IEVK T0547 347 :NK 1c52 65 :YN Number of specific fragments extracted= 2 number of extra gaps= 1 total=96813 # 1omhA.340.128 read from T0547.t06.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)E343 (1omhA)Q132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1omhA)G133 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1omhA)T135 because P (beta_P) conformation "forbidden" or filtered. T0547 340 :FSQ 1omhA 129 :QKI T0547 345 :A 1omhA 134 :K T0547 347 :NK 1omhA 136 :RI Number of specific fragments extracted= 3 number of extra gaps= 2 total=96816 # 2f6eA.340.14 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)E343 (2f6eA)D19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (2f6eA)K21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (2f6eA)F23 because E (beta_S) conformation "forbidden" or filtered. T0547 340 :FSQ 2f6eA 16 :KII T0547 346 :E 2f6eA 22 :N T0547 348 :K 2f6eA 24 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=96819 # 1gx5A.340.373 read from T0547.t06.many.frag # found chain 1gx5A in template set T0547 340 :FSQEYAENK 1gx5A 374 :HDASGKRVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=96820 # 1uc2A.340.336 read from T0547.t06.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)Q342 (1uc2A)V339 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1uc2A)D340 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1uc2A)G341 because T (delta_L) conformation "forbidden" or filtered. T0547 340 :FS 1uc2A 337 :HE T0547 345 :AENK 1uc2A 342 :KRVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=96822 # 1utcA.340.41 read from T0547.t06.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)Q342 (1utcA)V44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1utcA)E46 because G (3-10) conformation "forbidden" or filtered. T0547 340 :FS 1utcA 42 :EK T0547 343 :E 1utcA 45 :G T0547 345 :AENK 1utcA 47 :QAQV Number of specific fragments extracted= 3 number of extra gaps= 2 total=96825 # 2fa1A.340.54 read from T0547.t06.many.frag # found chain 2fa1A in training set Warning: unaligning (T0547)E343 (2fa1A)N139 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (2fa1A)C144 because E (beta_S) conformation "forbidden" or filtered. T0547 340 :FSQ 2fa1A 136 :RRV T0547 344 :YAEN 2fa1A 140 :GVAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=96827 # 1p9yA.340.8 read from T0547.t06.many.frag # found chain 1p9yA in template set T0547 340 :FSQEYAENK 1p9yA 6 :ETTQGLGRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=96828 # 1fjgL.340.58 read from T0547.t06.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)Y344 (1fjgL)G63 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1fjgL)V66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1fjgL)T67 because P (beta_P) conformation "forbidden" or filtered. T0547 340 :FSQE 1fjgL 59 :RLTS T0547 345 :AE 1fjgL 64 :YE Number of specific fragments extracted= 2 number of extra gaps= 2 total=96830 # 1n4wA.340.248 read from T0547.t06.many.frag # found chain 1n4wA in training set T0547 340 :FSQEYAENK 1n4wA 254 :RQTKDGGYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=96831 # 1ktgA.340.11 read from T0547.t06.many.frag # found chain 1ktgA in training set Warning: unaligning (T0547)Y344 (1ktgA)G16 because T (delta_L) conformation "forbidden" or filtered. T0547 340 :FSQE 1ktgA 12 :RKLA T0547 345 :AENK 1ktgA 17 :KIEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=96833 # 1v8qA.340.69 read from T0547.t06.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)E343 (1v8qA)G73 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1v8qA)L75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1v8qA)G76 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1v8qA)R77 because E (beta_S) conformation "forbidden" or filtered. T0547 340 :FSQ 1v8qA 70 :QDR T0547 344 :Y 1v8qA 74 :R T0547 348 :K 1v8qA 78 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=96836 # 1gx5A.341.374 read from T0547.t06.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. T0547 341 :SQEYAENK 1gx5A 375 :DASGKRVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=96837 # 1jb0E.341.27 read from T0547.t06.many.frag # found chain 1jb0E in template set T0547 341 :SQEYAENKL 1jb0E 28 :QTPGVKYPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=96838 # 3bamA.341.99 read from T0547.t06.many.frag # found chain 3bamA in training set Warning: unaligning (T0547)E346 (3bamA)L105 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (3bamA)R107 because E (beta_S) conformation "forbidden" or filtered. T0547 341 :SQEYA 3bamA 100 :IENSE T0547 347 :N 3bamA 106 :K T0547 349 :L 3bamA 108 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=96841 # 1gmlA.341.145 read from T0547.t06.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)E343 (1gmlA)G356 because S (epsilon) conformation "forbidden" or filtered. T0547 341 :SQ 1gmlA 354 :KI T0547 344 :YAENKL 1gmlA 357 :DEYFTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=96843 # 1xjvA.341.167 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)Y344 (1xjvA)G176 because T (delta_L) conformation "forbidden" or filtered. T0547 341 :SQE 1xjvA 173 :EVD T0547 345 :AENKL 1xjvA 177 :ASFLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96845 # 1t6sA.341.141 read from T0547.t06.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)Q342 (1t6sA)S143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1t6sA)R146 because L (left) conformation "forbidden" or filtered. T0547 341 :S 1t6sA 142 :D T0547 343 :EY 1t6sA 144 :PG T0547 346 :ENKL 1t6sA 147 :PLQY Number of specific fragments extracted= 3 number of extra gaps= 2 total=96848 # 1fjgL.341.59 read from T0547.t06.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)Y344 (1fjgL)G63 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1fjgL)V66 because E (beta_S) conformation "forbidden" or filtered. T0547 341 :SQE 1fjgL 60 :LTS T0547 345 :AE 1fjgL 64 :YE T0547 348 :KL 1fjgL 67 :TA Number of specific fragments extracted= 3 number of extra gaps= 2 total=96851 # 1bob.341.127 read from T0547.t06.many.frag # found chain 1bob in template set Warning: unaligning (T0547)E343 (1bob)N130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1bob)G131 because T (delta_L) conformation "forbidden" or filtered. T0547 341 :SQ 1bob 128 :SL T0547 345 :AENKL 1bob 132 :EEFVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96853 # 1fl0A.341.17 read from T0547.t06.many.frag # found chain 1fl0A in training set T0547 341 :SQEYAENKL 1fl0A 167 :KHPDADSLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=96854 # 2arcA.341.51 read from T0547.t06.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)E343 (2arcA)Q60 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (2arcA)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 341 :SQ 2arcA 58 :KN T0547 345 :AENKL 2arcA 62 :REFVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=96856 # 1ynfA.341.321 read from T0547.t06.many.frag # found chain 1ynfA in template set Warning: unaligning (T0547)K348 (1ynfA)M318 because E (beta_S) conformation "forbidden" or filtered. T0547 341 :SQEYAEN 1ynfA 311 :SRDDGSM T0547 349 :L 1ynfA 319 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=96858 # 1y8xB.341.39 read from T0547.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0547)A345 (1y8xB)K388 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1y8xB)N389 because P (beta_P) conformation "forbidden" or filtered. T0547 341 :SQEY 1y8xB 384 :TLEG T0547 347 :NKL 1y8xB 390 :RTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96860 # 1w4sA.341.53 read from T0547.t06.many.frag # found chain 1w4sA in training set T0547 341 :SQEYAENKL 1w4sA 983 :EDSAGEKWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=96861 # 1cv8.341.129 read from T0547.t06.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)Y344 (1cv8)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 341 :SQE 1cv8 130 :LNN T0547 345 :AENKL 1cv8 134 :QEVII Number of specific fragments extracted= 2 number of extra gaps= 1 total=96863 # 1utcA.341.42 read from T0547.t06.many.frag # found chain 1utcA in template set T0547 341 :SQEYAENKL 1utcA 43 :KVGEQAQVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=96864 # 1vraA.341.184 read from T0547.t06.many.frag # found chain 1vraA in template set Warning: unaligning (T0547)E343 (1vraA)N175 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1vraA)T178 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1vraA)T180 because E (beta_S) conformation "forbidden" or filtered. T0547 341 :SQ 1vraA 173 :IV T0547 344 :YA 1vraA 176 :GK T0547 347 :N 1vraA 179 :V T0547 349 :L 1vraA 181 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=96868 # 1r7mA.341.190 read from T0547.t06.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)E343 (1r7mA)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r7mA)N194 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1r7mA)K195 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1r7mA)P196 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1r7mA)I198 because E (beta_S) conformation "forbidden" or filtered. T0547 341 :SQ 1r7mA 191 :IN T0547 347 :N 1r7mA 197 :I T0547 349 :L 1r7mA 199 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=96871 # 1f60A.341.252 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)Y344 (1f60A)G256 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1f60A)G258 because S (epsilon) conformation "forbidden" or filtered. T0547 341 :SQE 1f60A 253 :KIG T0547 345 :A 1f60A 257 :I T0547 347 :NKL 1f60A 259 :TVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=96874 # 1c4qA.341.13 read from T0547.t06.many.frag # found chain 1c4qA in training set T0547 341 :SQEYAENKL 1c4qA 114 :YNDDDTFTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=96875 # 1ktgA.341.12 read from T0547.t06.many.frag # found chain 1ktgA in training set Warning: unaligning (T0547)Y344 (1ktgA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1ktgA)I18 because P (beta_P) conformation "forbidden" or filtered. T0547 341 :SQE 1ktgA 13 :KLA T0547 345 :A 1ktgA 17 :K T0547 347 :NKL 1ktgA 19 :EFL Number of specific fragments extracted= 3 number of extra gaps= 2 total=96878 # 2fa1A.341.55 read from T0547.t06.many.frag # found chain 2fa1A in training set Warning: unaligning (T0547)E343 (2fa1A)N139 because L (left) conformation "forbidden" or filtered. T0547 341 :SQ 2fa1A 137 :RV T0547 344 :YAENKL 2fa1A 140 :GVALCL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96880 # 1r9jA.341.542 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)Y344 (1r9jA)D544 because L (left) conformation "forbidden" or filtered. T0547 341 :SQE 1r9jA 541 :DVP T0547 345 :AENKL 1r9jA 545 :LQLVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=96882 # 1v8qA.341.70 read from T0547.t06.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)E343 (1v8qA)G73 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1v8qA)G76 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1v8qA)R77 because E (beta_S) conformation "forbidden" or filtered. T0547 341 :SQ 1v8qA 71 :DR T0547 344 :YA 1v8qA 74 :RL T0547 348 :KL 1v8qA 78 :YV Number of specific fragments extracted= 3 number of extra gaps= 2 total=96885 # 1iznA.341.146 read from T0547.t06.many.frag # found chain 1iznA in template set Warning: unaligning (T0547)E343 (1iznA)D149 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1iznA)G150 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1iznA)Q151 because P (beta_P) conformation "forbidden" or filtered. T0547 341 :SQ 1iznA 147 :SI T0547 346 :ENKL 1iznA 152 :QTII Number of specific fragments extracted= 2 number of extra gaps= 1 total=96887 # 1pfbA.341.13 read from T0547.t06.many.frag # found chain 1pfbA in training set Warning: unaligning (T0547)E343 (1pfbA)K38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1pfbA)G39 because T (delta_L) conformation "forbidden" or filtered. T0547 341 :SQ 1pfbA 36 :VK T0547 345 :AENKL 1pfbA 40 :VVEYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=96889 # 1xubA.341.126 read from T0547.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0547)E343 (1xubA)N109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1xubA)G110 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1xubA)V112 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1xubA)A114 because Y (epsilon') conformation "forbidden" or filtered. T0547 341 :SQ 1xubA 107 :RQ T0547 345 :A 1xubA 111 :S T0547 347 :N 1xubA 113 :I T0547 349 :L 1xubA 115 :A Number of specific fragments extracted= 4 number of extra gaps= 3 total=96893 # 1omhA.341.129 read from T0547.t06.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)A345 (1omhA)K134 because P (beta_P) conformation "forbidden" or filtered. T0547 341 :SQEY 1omhA 130 :KIQG T0547 346 :ENKL 1omhA 135 :TRIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=96895 # 1p9yA.341.9 read from T0547.t06.many.frag # found chain 1p9yA in template set Warning: unaligning (T0547)Y344 (1p9yA)G10 because S (epsilon) conformation "forbidden" or filtered. T0547 341 :SQE 1p9yA 7 :TTQ T0547 345 :AENKL 1p9yA 11 :LGRRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96897 # 1uc2A.341.337 read from T0547.t06.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)Q342 (1uc2A)V339 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (1uc2A)D340 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1uc2A)G341 because T (delta_L) conformation "forbidden" or filtered. T0547 341 :S 1uc2A 338 :E T0547 345 :AENKL 1uc2A 342 :KRVKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96899 # 1wdvA.341.49 read from T0547.t06.many.frag # found chain 1wdvA in training set T0547 341 :SQEYAENKL 1wdvA 50 :DNAGGVYAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=96900 # 1gx5A.342.375 read from T0547.t06.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)E346 (1gx5A)R380 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1gx5A)Y382 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. T0547 342 :QEYA 1gx5A 376 :ASGK T0547 347 :N 1gx5A 381 :V T0547 350 :I 1gx5A 384 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=96903 # 1fjgL.342.60 read from T0547.t06.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)Y344 (1fjgL)G63 because T (delta_L) conformation "forbidden" or filtered. T0547 342 :QE 1fjgL 61 :TS T0547 345 :AENKLI 1fjgL 64 :YEVTAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=96905 # 1bob.342.128 read from T0547.t06.many.frag # found chain 1bob in template set Warning: unaligning (T0547)Y344 (1bob)G131 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1bob)E133 because P (beta_P) conformation "forbidden" or filtered. T0547 342 :QE 1bob 129 :LN T0547 345 :A 1bob 132 :E T0547 347 :NKLI 1bob 134 :FVVY Number of specific fragments extracted= 3 number of extra gaps= 2 total=96908 # 1ynfA.342.322 read from T0547.t06.many.frag # found chain 1ynfA in template set Warning: unaligning (T0547)Y344 (1ynfA)D314 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1ynfA)S316 because P (beta_P) conformation "forbidden" or filtered. T0547 342 :QE 1ynfA 312 :RD T0547 345 :A 1ynfA 315 :G T0547 347 :NKLI 1ynfA 317 :MMLV Number of specific fragments extracted= 3 number of extra gaps= 2 total=96911 # 1cv8.342.130 read from T0547.t06.many.frag # found chain 1cv8 in training set T0547 342 :QEYAENKLI 1cv8 131 :NNGQEVIII Number of specific fragments extracted= 1 number of extra gaps= 0 total=96912 # 1t6sA.342.142 read from T0547.t06.many.frag # found chain 1t6sA in template set Warning: unaligning (T0547)Q342 (1t6sA)S143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1t6sA)G145 because T (delta_L) conformation "forbidden" or filtered. T0547 343 :E 1t6sA 144 :P T0547 345 :AENKLI 1t6sA 146 :RPLQYG Number of specific fragments extracted= 2 number of extra gaps= 2 total=96914 # 1r9jA.342.543 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)E343 (1r9jA)P543 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1r9jA)D544 because L (left) conformation "forbidden" or filtered. T0547 342 :Q 1r9jA 542 :V T0547 345 :AENKLI 1r9jA 545 :LQLVIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96916 # 1jb0E.342.28 read from T0547.t06.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)Q342 (1jb0E)T29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1jb0E)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 343 :E 1jb0E 30 :P T0547 345 :AENKLI 1jb0E 32 :VKYPVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=96918 # 1w4sA.342.54 read from T0547.t06.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)A345 (1w4sA)G987 because T (delta_L) conformation "forbidden" or filtered. T0547 342 :QEY 1w4sA 984 :DSA T0547 346 :ENKLI 1w4sA 988 :EKWLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=96920 # 1gmlA.342.146 read from T0547.t06.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)E343 (1gmlA)G356 because S (epsilon) conformation "forbidden" or filtered. T0547 342 :Q 1gmlA 355 :I T0547 344 :YAENKLI 1gmlA 357 :DEYFTFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=96922 # 1xjvA.342.168 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)N347 (1xjvA)F179 because E (beta_S) conformation "forbidden" or filtered. T0547 342 :QEYAE 1xjvA 174 :VDGAS T0547 348 :KLI 1xjvA 180 :LLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=96924 # 1yj7A.342.32 read from T0547.t06.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)A345 (1yj7A)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1yj7A)N56 because P (beta_P) conformation "forbidden" or filtered. T0547 342 :QEY 1yj7A 52 :DKS T0547 347 :NKLI 1yj7A 57 :MTLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=96926 # 1r5mA.342.157 read from T0547.t06.many.frag # found chain 1r5mA in training set T0547 342 :QEYAENKLI 1r5mA 270 :NKDGTHIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=96927 # 1utcA.342.43 read from T0547.t06.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)Y344 (1utcA)E46 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1utcA)V50 because E (beta_S) conformation "forbidden" or filtered. T0547 342 :QE 1utcA 44 :VG T0547 345 :AEN 1utcA 47 :QAQ T0547 349 :LI 1utcA 51 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=96930 # 3bamA.342.100 read from T0547.t06.many.frag # found chain 3bamA in training set Warning: unaligning (T0547)Y344 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (3bamA)L105 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (3bamA)R107 because E (beta_S) conformation "forbidden" or filtered. T0547 342 :QE 3bamA 101 :EN T0547 345 :A 3bamA 104 :E T0547 347 :N 3bamA 106 :K T0547 349 :LI 3bamA 108 :VG Number of specific fragments extracted= 4 number of extra gaps= 3 total=96934 # 1fl0A.342.18 read from T0547.t06.many.frag # found chain 1fl0A in training set T0547 342 :QEYAENKLI 1fl0A 168 :HPDADSLYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=96935 # 1ktgA.342.13 read from T0547.t06.many.frag # found chain 1ktgA in training set Warning: unaligning (T0547)K348 (1ktgA)F20 because E (beta_S) conformation "forbidden" or filtered. T0547 342 :QEYAEN 1ktgA 14 :LAGKIE T0547 349 :LI 1ktgA 21 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96937 # 1v8qA.342.71 read from T0547.t06.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)E343 (1v8qA)G73 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1v8qA)Y78 because P (beta_P) conformation "forbidden" or filtered. T0547 342 :Q 1v8qA 72 :R T0547 344 :YAEN 1v8qA 74 :RLGR T0547 349 :LI 1v8qA 79 :VH Number of specific fragments extracted= 3 number of extra gaps= 2 total=96940 1t4wA expands to /projects/compbio/data/pdb/1t4w.pdb.gz 1t4wA:# 1t4wA.342.23 read from T0547.t06.many.frag # adding 1t4wA to template set # found chain 1t4wA in template set Warning: unaligning (T0547)A345 (1t4wA)H249 because T (delta_L) conformation "forbidden" or filtered. T0547 342 :QEY 1t4wA 246 :SSE T0547 346 :ENKLI 1t4wA 250 :EKYLW Number of specific fragments extracted= 2 number of extra gaps= 1 total=96942 # 1y8xB.342.40 read from T0547.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0547)E343 (1y8xB)E386 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1y8xB)K388 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I350 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1y8xB)Q395 T0547 342 :Q 1y8xB 385 :L T0547 344 :Y 1y8xB 387 :G T0547 346 :ENKL 1y8xB 389 :NRTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=96945 # 1ix9A.342.133 read from T0547.t06.many.frag # found chain 1ix9A in training set Warning: unaligning (T0547)E343 (1ix9A)G135 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1ix9A)V140 because E (beta_S) conformation "forbidden" or filtered. T0547 342 :Q 1ix9A 134 :K T0547 344 :YAEN 1ix9A 136 :DKLA T0547 349 :LI 1ix9A 141 :VS Number of specific fragments extracted= 3 number of extra gaps= 2 total=96948 # 1wdvA.342.50 read from T0547.t06.many.frag # found chain 1wdvA in training set Warning: unaligning (T0547)Y344 (1wdvA)G53 because T (delta_L) conformation "forbidden" or filtered. T0547 342 :QE 1wdvA 51 :NA T0547 345 :AENKLI 1wdvA 54 :GVYAVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96950 # 2pth.342.52 read from T0547.t06.many.frag # found chain 2pth in training set Warning: unaligning (T0547)Q342 (2pth)L53 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E343 (2pth)G54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (2pth)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (2pth)D57 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :A 2pth 56 :E T0547 347 :NKLI 2pth 58 :VRLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=96952 # 1kjqA.342.224 read from T0547.t06.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)E343 (1kjqA)D227 because L (left) conformation "forbidden" or filtered. T0547 342 :Q 1kjqA 226 :E T0547 344 :YAENKLI 1kjqA 228 :GDYRESW Number of specific fragments extracted= 2 number of extra gaps= 1 total=96954 # 1uc2A.342.338 read from T0547.t06.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)E343 (1uc2A)D340 because L (left) conformation "forbidden" or filtered. T0547 342 :Q 1uc2A 339 :V T0547 344 :YAENKLI 1uc2A 341 :GKRVKVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=96956 # 1gvjA.342.109 read from T0547.t06.many.frag # found chain 1gvjA in training set T0547 342 :QEYAENKLI 1gvjA 405 :TAGKRYVYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=96957 # 2ai4A.342.20 read from T0547.t06.many.frag # found chain 2ai4A in training set Warning: unaligning (T0547)E346 (2ai4A)P22 because P (beta_P) conformation "forbidden" or filtered. T0547 342 :QEYA 2ai4A 18 :ENGE T0547 347 :NKLI 2ai4A 23 :VFIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=96959 # 1p9yA.342.10 read from T0547.t06.many.frag # found chain 1p9yA in template set Warning: unaligning (T0547)Y344 (1p9yA)G10 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1p9yA)G12 because P (beta_P) conformation "forbidden" or filtered. T0547 342 :QE 1p9yA 8 :TQ T0547 345 :A 1p9yA 11 :L T0547 347 :NKLI 1p9yA 13 :RRVT Number of specific fragments extracted= 3 number of extra gaps= 2 total=96962 # 1k8kD.342.156 read from T0547.t06.many.frag # found chain 1k8kD in template set Warning: unaligning (T0547)A345 (1k8kD)R160 because Y (epsilon') conformation "forbidden" or filtered. T0547 342 :QEY 1k8kD 157 :KKD T0547 346 :ENKLI 1k8kD 161 :VTVVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=96964 # 1wruA.342.199 read from T0547.t06.many.frag # found chain 1wruA in template set T0547 342 :QEYAENKLI 1wruA 200 :FRDRFSEYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=96965 # 1gx5A.343.376 read from T0547.t06.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)Y344 (1gx5A)G378 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1gx5A)T385 because Y (epsilon') conformation "forbidden" or filtered. T0547 343 :E 1gx5A 377 :S T0547 345 :AENKLI 1gx5A 379 :KRVYYL Number of specific fragments extracted= 2 number of extra gaps= 2 total=96967 # 1fjgL.343.61 read from T0547.t06.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)Y344 (1fjgL)G63 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1fjgL)E65 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1fjgL)V66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1fjgL)I70 because D (zeta) conformation "forbidden" or filtered. T0547 343 :E 1fjgL 62 :S T0547 345 :A 1fjgL 64 :Y T0547 348 :KLI 1fjgL 67 :TAY Number of specific fragments extracted= 3 number of extra gaps= 3 total=96970 # 1ynfA.343.323 read from T0547.t06.many.frag # found chain 1ynfA in template set Warning: unaligning (T0547)A345 (1ynfA)G315 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1ynfA)S316 because P (beta_P) conformation "forbidden" or filtered. T0547 343 :EY 1ynfA 313 :DD T0547 347 :NKLIL 1ynfA 317 :MMLVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96972 # 1utcA.343.44 read from T0547.t06.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)E343 (1utcA)G45 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1utcA)A48 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :YA 1utcA 46 :EQ T0547 347 :NKLIL 1utcA 49 :QVVII Number of specific fragments extracted= 2 number of extra gaps= 2 total=96974 # 1r9jA.343.544 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)Y344 (1r9jA)D544 because L (left) conformation "forbidden" or filtered. T0547 343 :E 1r9jA 543 :P T0547 345 :AENKLIL 1r9jA 545 :LQLVIVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=96976 # 1yj7A.343.33 read from T0547.t06.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)A345 (1yj7A)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 343 :EY 1yj7A 53 :KS T0547 346 :ENKLIL 1yj7A 56 :NMTLSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96978 # 1ktgA.343.14 read from T0547.t06.many.frag # found chain 1ktgA in training set Warning: unaligning (T0547)N347 (1ktgA)E19 because E (beta_S) conformation "forbidden" or filtered. T0547 343 :EYAE 1ktgA 15 :AGKI T0547 348 :KLIL 1ktgA 20 :FLLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=96980 # 1t4wA.343.24 read from T0547.t06.many.frag # found chain 1t4wA in template set Warning: unaligning (T0547)Y344 (1t4wA)E248 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1t4wA)T255 because Y (epsilon') conformation "forbidden" or filtered. T0547 343 :E 1t4wA 247 :S T0547 345 :AENKLI 1t4wA 249 :HEKYLW Number of specific fragments extracted= 2 number of extra gaps= 2 total=96982 # 1bob.343.129 read from T0547.t06.many.frag # found chain 1bob in template set Warning: unaligning (T0547)E343 (1bob)N130 because L (left) conformation "forbidden" or filtered. T0547 344 :YAENKLIL 1bob 131 :GEEFVVYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=96983 # 1jb0E.343.29 read from T0547.t06.many.frag # found chain 1jb0E in template set Warning: unaligning (T0547)Y344 (1jb0E)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 343 :E 1jb0E 30 :P T0547 345 :AENKLIL 1jb0E 32 :VKYPVIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=96985 # 1wdvA.343.51 read from T0547.t06.many.frag # found chain 1wdvA in training set Warning: unaligning (T0547)Y344 (1wdvA)G53 because T (delta_L) conformation "forbidden" or filtered. T0547 343 :E 1wdvA 52 :A T0547 345 :AENKLIL 1wdvA 54 :GVYAVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=96987 # 2fimA.343.150 read from T0547.t06.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fimA)R366 T0547 346 :ENKLIL 2fimA 367 :RMTVII Number of specific fragments extracted= 1 number of extra gaps= 0 total=96988 # 1cv8.343.131 read from T0547.t06.many.frag # found chain 1cv8 in training set Warning: unaligning (T0547)Y344 (1cv8)G133 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1cv8)Q134 because P (beta_P) conformation "forbidden" or filtered. T0547 343 :E 1cv8 132 :N T0547 346 :ENKLIL 1cv8 135 :EVIIIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=96990 # 2pth.343.53 read from T0547.t06.many.frag # found chain 2pth in training set Warning: unaligning (T0547)E343 (2pth)G54 because L (left) conformation "forbidden" or filtered. T0547 344 :YAENKLIL 2pth 55 :GEDVRLLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=96991 # 1ztpA.343.31 read from T0547.t06.many.frag # found chain 1ztpA in template set Warning: unaligning (T0547)K348 (1ztpA)W37 because E (beta_S) conformation "forbidden" or filtered. T0547 343 :EYAEN 1ztpA 32 :ADMDP T0547 349 :LIL 1ztpA 38 :LVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=96993 # 1tuoA.343.280 read from T0547.t06.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)Y344 (1tuoA)G282 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1tuoA)G285 because S (epsilon) conformation "forbidden" or filtered. T0547 343 :E 1tuoA 281 :K T0547 345 :AE 1tuoA 283 :HR T0547 348 :KLIL 1tuoA 286 :RAVK Number of specific fragments extracted= 3 number of extra gaps= 2 total=96996 # 1uc2A.343.339 read from T0547.t06.many.frag # found chain 1uc2A in template set Warning: unaligning (T0547)E343 (1uc2A)D340 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y344 (1uc2A)G341 because T (delta_L) conformation "forbidden" or filtered. T0547 345 :AENKLIL 1uc2A 342 :KRVKVIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=96997 # 1atg.343.101 read from T0547.t06.many.frag # found chain 1atg in training set Warning: unaligning (T0547)K348 (1atg)I108 because E (beta_S) conformation "forbidden" or filtered. T0547 343 :EYAEN 1atg 103 :NGWRH T0547 349 :LIL 1atg 109 :AIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=96999 # 1gmlA.343.147 read from T0547.t06.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)A345 (1gmlA)E358 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1gmlA)T364 because Y (epsilon') conformation "forbidden" or filtered. T0547 343 :EY 1gmlA 356 :GD T0547 346 :ENKLI 1gmlA 359 :YFTFI Number of specific fragments extracted= 2 number of extra gaps= 2 total=97001 # 1gvjA.343.110 read from T0547.t06.many.frag # found chain 1gvjA in training set Warning: unaligning (T0547)E343 (1gvjA)A406 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :YAENKLIL 1gvjA 407 :GKRYVYRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=97002 # 1r5mA.343.158 read from T0547.t06.many.frag # found chain 1r5mA in training set Warning: unaligning (T0547)A345 (1r5mA)G273 because L (left) conformation "forbidden" or filtered. T0547 343 :EY 1r5mA 271 :KD T0547 346 :ENKLIL 1r5mA 274 :THIISM Number of specific fragments extracted= 2 number of extra gaps= 1 total=97004 # 1fl0A.343.19 read from T0547.t06.many.frag # found chain 1fl0A in training set Warning: unaligning (T0547)A345 (1fl0A)A171 because D (zeta) conformation "forbidden" or filtered. T0547 343 :EY 1fl0A 169 :PD T0547 346 :ENKLIL 1fl0A 172 :DSLYVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97006 # 1xtoA.343.45 read from T0547.t06.many.frag # found chain 1xtoA in template set Warning: unaligning (T0547)A345 (1xtoA)G48 because T (delta_L) conformation "forbidden" or filtered. T0547 343 :EY 1xtoA 46 :DD T0547 346 :ENKLIL 1xtoA 49 :VHWILC Number of specific fragments extracted= 2 number of extra gaps= 1 total=97008 # 1xjvA.343.169 read from T0547.t06.many.frag # found chain 1xjvA in training set Warning: unaligning (T0547)Y344 (1xjvA)G176 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1xjvA)V183 because Y (epsilon') conformation "forbidden" or filtered. T0547 343 :E 1xjvA 175 :D T0547 345 :AENKLI 1xjvA 177 :ASFLLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=97010 # 1wdaA.343.366 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K348 (1wdaA)P365 because P (beta_P) conformation "forbidden" or filtered. T0547 343 :EYAEN 1wdaA 360 :PHKTL T0547 349 :LIL 1wdaA 366 :VVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=97012 # 1ix9A.343.134 read from T0547.t06.many.frag # found chain 1ix9A in training set Warning: unaligning (T0547)E343 (1ix9A)G135 because S (epsilon) conformation "forbidden" or filtered. T0547 344 :YAENKLIL 1ix9A 136 :DKLAVVST Number of specific fragments extracted= 1 number of extra gaps= 1 total=97013 # 7odcA.343.309 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 345 :AENKLIL 7odcA 312 :QTFMYYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=97014 # 1kjqA.343.225 read from T0547.t06.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)Y344 (1kjqA)G228 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I350 (1kjqA)W234 because Y (epsilon') conformation "forbidden" or filtered. T0547 343 :E 1kjqA 227 :D T0547 345 :AENKL 1kjqA 229 :DYRES T0547 351 :L 1kjqA 235 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=97017 # 1xzpB.343.42 read from T0547.t06.many.frag # found chain 1xzpB in template set Warning: unaligning (T0547)Y344 (1xzpB)G12 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1xzpB)G14 because Y (epsilon') conformation "forbidden" or filtered. T0547 343 :E 1xzpB 11 :P T0547 345 :A 1xzpB 13 :K T0547 347 :NKLIL 1xzpB 15 :AIAIL Number of specific fragments extracted= 3 number of extra gaps= 2 total=97020 # 1v8qA.343.72 read from T0547.t06.many.frag # found chain 1v8qA in template set Warning: unaligning (T0547)K348 (1v8qA)Y78 because P (beta_P) conformation "forbidden" or filtered. T0547 343 :EYAEN 1v8qA 73 :GRLGR T0547 349 :LIL 1v8qA 79 :VHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=97022 # 1tuoA.344.281 read from T0547.t06.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)Y344 (1tuoA)G282 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1tuoA)R284 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1tuoA)R286 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1tuoA)N290 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :A 1tuoA 283 :H T0547 347 :N 1tuoA 285 :G T0547 349 :LIL 1tuoA 287 :AVK Number of specific fragments extracted= 3 number of extra gaps= 4 total=97025 # 1gx5A.344.377 read from T0547.t06.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)Y344 (1gx5A)G378 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1gx5A)T385 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :AENK 1gx5A 379 :KRVY T0547 350 :I 1gx5A 384 :L Number of specific fragments extracted= 2 number of extra gaps= 3 total=97027 # 1fjgL.344.62 read from T0547.t06.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)Y344 (1fjgL)G63 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1fjgL)Y64 because E (beta_S) conformation "forbidden" or filtered. T0547 346 :ENKLILK 1fjgL 65 :EVTAYIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=97028 # 2fimA.344.151 read from T0547.t06.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fimA)R366 T0547 346 :ENKLILK 2fimA 367 :RMTVIIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97029 # 2pth.344.54 read from T0547.t06.many.frag # found chain 2pth in training set Warning: unaligning (T0547)Y344 (2pth)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (2pth)R59 because E (beta_S) conformation "forbidden" or filtered. T0547 345 :AEN 2pth 56 :EDV T0547 349 :LILK 2pth 60 :LLVP Number of specific fragments extracted= 2 number of extra gaps= 2 total=97031 # 1ynfA.344.324 read from T0547.t06.many.frag # found chain 1ynfA in template set T0547 344 :YAENKLILK 1ynfA 314 :DGSMMLVLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97032 # 7odcA.344.310 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Y344 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (7odcA)E311 T0547 345 :AENKLILK 7odcA 312 :QTFMYYVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97033 # 1atg.344.102 read from T0547.t06.many.frag # found chain 1atg in training set Warning: unaligning (T0547)A345 (1atg)W105 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :Y 1atg 104 :G T0547 346 :ENKLILK 1atg 106 :RHIAISN Number of specific fragments extracted= 2 number of extra gaps= 1 total=97035 # 1yj7A.344.34 read from T0547.t06.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)A345 (1yj7A)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1yj7A)N56 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N347 (1yj7A)M57 because E (beta_S) conformation "forbidden" or filtered. T0547 344 :Y 1yj7A 54 :S T0547 348 :KLILK 1yj7A 58 :TLSVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=97037 # 1ztpA.344.32 read from T0547.t06.many.frag # found chain 1ztpA in template set Warning: unaligning (T0547)N347 (1ztpA)P36 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :YAE 1ztpA 33 :DMD T0547 348 :KLILK 1ztpA 37 :WLVFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=97039 # 1wdaA.344.367 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K348 (1wdaA)P365 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :YAEN 1wdaA 361 :HKTL T0547 349 :LILK 1wdaA 366 :VVFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=97041 # 1utcA.344.45 read from T0547.t06.many.frag # found chain 1utcA in template set T0547 344 :YAENKLILK 1utcA 46 :EQAQVVIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=97042 # 1w5rA.344.121 read from T0547.t06.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)N347 (1w5rA)G122 because S (epsilon) conformation "forbidden" or filtered. T0547 344 :YAE 1w5rA 119 :GAD T0547 348 :KLILK 1w5rA 123 :RYLVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=97044 # 1r9jA.344.545 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)L351 (1r9jA)A551 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1r9jA)S552 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :YAENKLI 1r9jA 544 :DLQLVIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=97045 # 1xtoA.344.46 read from T0547.t06.many.frag # found chain 1xtoA in template set Warning: unaligning (T0547)A345 (1xtoA)G48 because T (delta_L) conformation "forbidden" or filtered. T0547 344 :Y 1xtoA 47 :D T0547 346 :ENKLILK 1xtoA 49 :VHWILCN Number of specific fragments extracted= 2 number of extra gaps= 1 total=97047 # 1wpnA.344.66 read from T0547.t06.many.frag # found chain 1wpnA in training set Warning: unaligning (T0547)A345 (1wpnA)V68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1wpnA)D75 because T (delta_L) conformation "forbidden" or filtered. T0547 344 :Y 1wpnA 67 :E T0547 346 :ENKLIL 1wpnA 69 :NGVILV Number of specific fragments extracted= 2 number of extra gaps= 2 total=97049 # 1bob.344.130 read from T0547.t06.many.frag # found chain 1bob in template set Warning: unaligning (T0547)E346 (1bob)E133 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1bob)V135 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1bob)S139 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :YA 1bob 131 :GE T0547 347 :N 1bob 134 :F T0547 349 :LIL 1bob 136 :VYK Number of specific fragments extracted= 3 number of extra gaps= 3 total=97052 # 1t4wA.344.25 read from T0547.t06.many.frag # found chain 1t4wA in template set Warning: unaligning (T0547)L351 (1t4wA)T255 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :YAENKLI 1t4wA 248 :EHEKYLW T0547 352 :K 1t4wA 256 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=97054 # 1rtqA.344.185 read from T0547.t06.many.frag # found chain 1rtqA in training set T0547 344 :YAENKLILK 1rtqA 186 :SAQDVVFIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=97055 # 1nuyA.344.203 read from T0547.t06.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)L351 (1nuyA)I1211 because Y (epsilon') conformation "forbidden" or filtered. T0547 344 :YAENKLI 1nuyA 1204 :KKGSIYS T0547 352 :K 1nuyA 1212 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=97057 # 1fy7A.344.32 read from T0547.t06.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)Y344 (1fy7A)T190 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :AENKLILK 1fy7A 191 :DEDFIYID Number of specific fragments extracted= 1 number of extra gaps= 1 total=97058 # 1vpbA.344.243 read from T0547.t06.many.frag # found chain 1vpbA in training set Warning: unaligning (T0547)K352 (1vpbA)D240 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :YAENKLIL 1vpbA 232 :SGKYTMVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=97059 # 1ix9A.344.135 read from T0547.t06.many.frag # found chain 1ix9A in training set Warning: unaligning (T0547)E346 (1ix9A)L138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1ix9A)A144 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :YA 1ix9A 136 :DK T0547 347 :NKLIL 1ix9A 139 :AVVST Number of specific fragments extracted= 2 number of extra gaps= 2 total=97061 # 1wdvA.344.52 read from T0547.t06.many.frag # found chain 1wdvA in training set T0547 344 :YAENKLILK 1wdvA 53 :GGVYAVVIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97062 # 1jb0E.344.30 read from T0547.t06.many.frag # found chain 1jb0E in template set T0547 344 :YAENKLILK 1jb0E 31 :GVKYPVIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97063 # 1ktgA.344.15 read from T0547.t06.many.frag # found chain 1ktgA in training set Warning: unaligning (T0547)K352 (1ktgA)Q24 because P (beta_P) conformation "forbidden" or filtered. T0547 344 :YAENKLIL 1ktgA 16 :GKIEFLLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=97064 # 3bamA.344.102 read from T0547.t06.many.frag # found chain 3bamA in training set Warning: unaligning (T0547)A345 (3bamA)E104 because E (beta_S) conformation "forbidden" or filtered. T0547 344 :Y 3bamA 103 :S T0547 346 :ENKLILK 3bamA 105 :LKRVGME Number of specific fragments extracted= 2 number of extra gaps= 1 total=97066 # 1obdA.344.224 read from T0547.t06.many.frag # found chain 1obdA in template set Warning: unaligning (T0547)A345 (1obdA)T226 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E346 (1obdA)N227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1obdA)I229 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1obdA)D233 because S (epsilon) conformation "forbidden" or filtered. T0547 344 :Y 1obdA 225 :K T0547 347 :N 1obdA 228 :E T0547 349 :LIL 1obdA 230 :ILV Number of specific fragments extracted= 3 number of extra gaps= 3 total=97069 # 1knwA.344.290 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Y344 (1knwA)G291 because S (epsilon) conformation "forbidden" or filtered. T0547 345 :AENKLILK 1knwA 292 :SRHFVLVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=97070 # 1kjqA.344.226 read from T0547.t06.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)Y344 (1kjqA)G228 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A345 (1kjqA)D229 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1kjqA)E232 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1kjqA)P236 because C (cis) conformation "forbidden" or filtered. T0547 346 :EN 1kjqA 230 :YR T0547 349 :LIL 1kjqA 233 :SWQ Number of specific fragments extracted= 2 number of extra gaps= 3 total=97072 # 1tuoA.345.282 read from T0547.t06.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)N347 (1tuoA)G285 because S (epsilon) conformation "forbidden" or filtered. T0547 345 :AE 1tuoA 283 :HR T0547 348 :KLILKK 1tuoA 286 :RAVKNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=97074 # 1gx5A.345.378 read from T0547.t06.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1gx5A)T385 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :AENK 1gx5A 379 :KRVY T0547 350 :I 1gx5A 384 :L T0547 352 :KK 1gx5A 386 :RD Number of specific fragments extracted= 3 number of extra gaps= 2 total=97077 # 7odcA.345.311 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K352 (7odcA)N319 because G (3-10) conformation "forbidden" or filtered. T0547 345 :AENKLIL 7odcA 312 :QTFMYYV T0547 353 :K 7odcA 320 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=97079 # 1fjgL.345.63 read from T0547.t06.many.frag # found chain 1fjgL in template set T0547 345 :AENKLILKK 1fjgL 64 :YEVTAYIPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=97080 # 1wdaA.345.368 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K348 (1wdaA)P365 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :AEN 1wdaA 362 :KTL T0547 349 :LILKK 1wdaA 366 :VVFDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=97082 # 2fimA.345.152 read from T0547.t06.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)A345 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fimA)R366 Warning: unaligning (T0547)K348 (2fimA)T369 because E (beta_S) conformation "forbidden" or filtered. T0547 346 :EN 2fimA 367 :RM T0547 349 :LILKK 2fimA 370 :VIIPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=97084 # 1ztpA.345.33 read from T0547.t06.many.frag # found chain 1ztpA in template set T0547 345 :AENKLILKK 1ztpA 34 :MDPWLVFDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97085 # 2pth.345.55 read from T0547.t06.many.frag # found chain 2pth in training set Warning: unaligning (T0547)A345 (2pth)E56 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (2pth)P63 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :ENKLIL 2pth 57 :DVRLLV T0547 353 :K 2pth 64 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=97087 # 1atg.345.103 read from T0547.t06.many.frag # found chain 1atg in training set T0547 345 :AENKLILKK 1atg 105 :WRHIAISNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97088 # 1yj7A.345.35 read from T0547.t06.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)A345 (1yj7A)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :ENKLILKK 1yj7A 56 :NMTLSVAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=97089 # 1fy7A.345.33 read from T0547.t06.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)E346 (1fy7A)E192 because E (beta_S) conformation "forbidden" or filtered. T0547 345 :A 1fy7A 191 :D T0547 347 :NKLILKK 1fy7A 193 :DFIYIDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=97091 # 1knwA.345.291 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K352 (1knwA)D299 because G (3-10) conformation "forbidden" or filtered. T0547 345 :AENKLIL 1knwA 292 :SRHFVLV T0547 353 :K 1knwA 300 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=97093 # 2jdxA.345.327 read from T0547.t06.many.frag # found chain 2jdxA in template set T0547 345 :AENKLILKK 2jdxA 366 :DEKRVMVDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97094 # 1nuyA.345.204 read from T0547.t06.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)E346 (1nuyA)G1206 because Y (epsilon') conformation "forbidden" or filtered. T0547 345 :A 1nuyA 1205 :K T0547 347 :NKLILKK 1nuyA 1207 :SIYSINE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97096 # 1rtqA.345.186 read from T0547.t06.many.frag # found chain 1rtqA in training set T0547 345 :AENKLILKK 1rtqA 187 :AQDVVFITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=97097 # 1vpbA.345.244 read from T0547.t06.many.frag # found chain 1vpbA in training set Warning: unaligning (T0547)A345 (1vpbA)G233 because Y (epsilon') conformation "forbidden" or filtered. T0547 346 :ENKLILKK 1vpbA 234 :KYTMVVDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=97098 # 1utcA.345.46 read from T0547.t06.many.frag # found chain 1utcA in template set T0547 345 :AENKLILKK 1utcA 47 :QAQVVIIDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=97099 # 1wpnA.345.67 read from T0547.t06.many.frag # found chain 1wpnA in training set Warning: unaligning (T0547)A345 (1wpnA)V68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1wpnA)D75 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :ENKLIL 1wpnA 69 :NGVILV T0547 353 :K 1wpnA 76 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=97101 # 1kjqA.345.227 read from T0547.t06.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)K352 (1kjqA)P236 because C (cis) conformation "forbidden" or filtered. T0547 345 :AENKLIL 1kjqA 229 :DYRESWQ T0547 353 :K 1kjqA 237 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=97103 # 1w5rA.345.122 read from T0547.t06.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)N347 (1w5rA)G122 because S (epsilon) conformation "forbidden" or filtered. T0547 345 :AE 1w5rA 120 :AD T0547 348 :KLILKK 1w5rA 123 :RYLVDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=97105 # 1xy7A.345.25 read from T0547.t06.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)K353 (1xy7A)A34 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :AENKLILK 1xy7A 26 :FKQMLLVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=97106 1zymA expands to /projects/compbio/data/pdb/1zym.pdb.gz 1zymA:# 1zymA.345.213 read from T0547.t06.many.frag # adding 1zymA to template set # found chain 1zymA in template set Warning: unaligning (T0547)E346 (1zymA)D215 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1zymA)Y217 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1zymA)A222 because L (left) conformation "forbidden" or filtered. T0547 345 :A 1zymA 214 :N T0547 347 :N 1zymA 216 :D T0547 349 :LILK 1zymA 218 :LILD Number of specific fragments extracted= 3 number of extra gaps= 3 total=97109 # 1ix9A.345.136 read from T0547.t06.many.frag # found chain 1ix9A in training set T0547 345 :AENKLILKK 1ix9A 137 :KLAVVSTAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97110 # 1nmoA.345.163 read from T0547.t06.many.frag # found chain 1nmoA in template set Warning: unaligning (T0547)L351 (1nmoA)W170 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1nmoA)T172 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :AENKLI 1nmoA 164 :VVQRVA T0547 352 :K 1nmoA 171 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=97112 # 2nacA.345.273 read from T0547.t06.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)N347 (2nacA)G276 because T (delta_L) conformation "forbidden" or filtered. T0547 345 :AE 2nacA 274 :KR T0547 348 :KLILKK 2nacA 277 :AYIVNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=97114 # 1ynfA.345.325 read from T0547.t06.many.frag # found chain 1ynfA in template set Warning: unaligning (T0547)E346 (1ynfA)S316 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1ynfA)P322 because P (beta_P) conformation "forbidden" or filtered. T0547 345 :A 1ynfA 315 :G T0547 347 :NKLIL 1ynfA 317 :MMLVL T0547 353 :K 1ynfA 323 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=97117 # 3bamA.345.103 read from T0547.t06.many.frag # found chain 3bamA in training set T0547 345 :AENKLILKK 3bamA 104 :ELKRVGMEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=97118 # 1xtoA.345.47 read from T0547.t06.many.frag # found chain 1xtoA in template set Warning: unaligning (T0547)A345 (1xtoA)G48 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :ENKLILKK 1xtoA 49 :VHWILCNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=97119 # 1c7kA.345.60 read from T0547.t06.many.frag # found chain 1c7kA in training set T0547 345 :AENKLILKK 1c7kA 61 :GRGYIFLDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=97120 # 1zbxB.345.123 read from T0547.t06.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)A345 (1zbxB)Q603 because T (delta_L) conformation "forbidden" or filtered. T0547 346 :ENKLILKK 1zbxB 604 :TVQYLYDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=97121 # 1gx5A.346.379 read from T0547.t06.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1gx5A)T385 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. T0547 346 :ENK 1gx5A 380 :RVY T0547 350 :I 1gx5A 384 :L T0547 353 :KQ 1gx5A 387 :DP Number of specific fragments extracted= 3 number of extra gaps= 2 total=97124 # 1tuoA.346.283 read from T0547.t06.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)N347 (1tuoA)G285 because S (epsilon) conformation "forbidden" or filtered. T0547 346 :E 1tuoA 284 :R T0547 348 :KLILKKQ 1tuoA 286 :RAVKNFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=97126 # 7odcA.346.312 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N347 (7odcA)F314 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (7odcA)G321 because Y (epsilon') conformation "forbidden" or filtered. T0547 346 :E 7odcA 313 :T T0547 348 :KLILKK 7odcA 315 :MYYVND Number of specific fragments extracted= 2 number of extra gaps= 2 total=97128 # 2fimA.346.153 read from T0547.t06.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)E346 (2fimA)R367 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :NKLILKKQ 2fimA 368 :MTVIIPGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=97129 # 1fjgL.346.64 read from T0547.t06.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)K348 (1fjgL)T67 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :EN 1fjgL 65 :EV T0547 349 :LILKKQ 1fjgL 68 :AYIPGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97131 # 1fy7A.346.34 read from T0547.t06.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)N347 (1fy7A)D193 because G (3-10) conformation "forbidden" or filtered. T0547 346 :E 1fy7A 192 :E T0547 348 :KLILKKQ 1fy7A 194 :FIYIDDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=97133 # 2jdxA.346.328 read from T0547.t06.many.frag # found chain 2jdxA in template set T0547 346 :ENKLILKKQ 2jdxA 367 :EKRVMVDAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97134 # 1ztpA.346.34 read from T0547.t06.many.frag # found chain 1ztpA in template set Warning: unaligning (T0547)E346 (1ztpA)D35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 because of BadResidue code BAD_PEPTIDE in next template residue (1ztpA)T44 T0547 347 :NKLILKK 1ztpA 36 :PWLVFDA Number of specific fragments extracted= 1 number of extra gaps= 2 total=97135 # 1knwA.346.292 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 346 :ENKLILKKQ 1knwA 293 :RHFVLVDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=97136 # 1wdaA.346.369 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K348 (1wdaA)P365 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1wdaA)D369 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1wdaA)S370 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :EN 1wdaA 363 :TL T0547 349 :LIL 1wdaA 366 :VVF T0547 354 :Q 1wdaA 371 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=97139 # 1utcA.346.47 read from T0547.t06.many.frag # found chain 1utcA in template set T0547 346 :ENKLILKKQ 1utcA 48 :AQVVIIDMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97140 # 1yj7A.346.36 read from T0547.t06.many.frag # found chain 1yj7A in training set T0547 346 :ENKLILKKQ 1yj7A 56 :NMTLSVAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97141 # 1yt8A.346.346 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)K352 (1yt8A)D353 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :ENKLIL 1yt8A 347 :WQVAVL T0547 353 :KQ 1yt8A 354 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=97143 # 2pth.346.56 read from T0547.t06.many.frag # found chain 2pth in training set Warning: unaligning (T0547)N347 (2pth)V58 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (2pth)V62 because D (zeta) conformation "forbidden" or filtered. T0547 346 :E 2pth 57 :D T0547 348 :KLI 2pth 59 :RLL T0547 352 :KKQ 2pth 63 :PTT Number of specific fragments extracted= 3 number of extra gaps= 2 total=97146 # 1vpbA.346.245 read from T0547.t06.many.frag # found chain 1vpbA in training set T0547 346 :ENKLILKKQ 1vpbA 234 :KYTMVVDPM Number of specific fragments extracted= 1 number of extra gaps= 0 total=97147 # 1nuyA.346.205 read from T0547.t06.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)K353 (1nuyA)E1213 because G (3-10) conformation "forbidden" or filtered. T0547 346 :ENKLILK 1nuyA 1206 :GSIYSIN T0547 354 :Q 1nuyA 1214 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=97149 # 1zymA.346.214 read from T0547.t06.many.frag # found chain 1zymA in template set Warning: unaligning (T0547)N347 (1zymA)D216 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1zymA)A222 because L (left) conformation "forbidden" or filtered. T0547 346 :E 1zymA 215 :D T0547 348 :KLILK 1zymA 217 :YLILD T0547 354 :Q 1zymA 223 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=97152 # 1rtqA.346.187 read from T0547.t06.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)Q354 (1rtqA)Y196 because L (left) conformation "forbidden" or filtered. T0547 346 :ENKLILKK 1rtqA 188 :QDVVFITD Number of specific fragments extracted= 1 number of extra gaps= 1 total=97153 # 1atg.346.104 read from T0547.t06.many.frag # found chain 1atg in training set Warning: unaligning (T0547)N347 (1atg)H107 because E (beta_S) conformation "forbidden" or filtered. T0547 346 :E 1atg 106 :R T0547 348 :KLILKKQ 1atg 108 :IAISNPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=97155 # 1xy7A.346.26 read from T0547.t06.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)E346 (1xy7A)K27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1xy7A)E33 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :NKLIL 1xy7A 28 :QMLLV T0547 353 :KQ 1xy7A 34 :AQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=97157 # 1wpnA.346.68 read from T0547.t06.many.frag # found chain 1wpnA in training set Warning: unaligning (T0547)K352 (1wpnA)D75 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1wpnA)H76 because Y (epsilon') conformation "forbidden" or filtered. T0547 346 :ENKLIL 1wpnA 69 :NGVILV T0547 354 :Q 1wpnA 77 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=97159 # 1wdvA.346.54 read from T0547.t06.many.frag # found chain 1wdvA in training set T0547 346 :ENKLILKKQ 1wdvA 55 :VYAVVIPGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=97160 # 1r7mA.346.194 read from T0547.t06.many.frag # found chain 1r7mA in template set T0547 346 :ENKLILKKQ 1r7mA 195 :KPIIYIDSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=97161 # 1kjqA.346.228 read from T0547.t06.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)K352 (1kjqA)P236 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1kjqA)Q238 because P (beta_P) conformation "forbidden" or filtered. T0547 346 :ENKLIL 1kjqA 230 :YRESWQ T0547 353 :K 1kjqA 237 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=97163 # 1cliA.346.263 read from T0547.t06.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)E346 (1cliA)N264 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1cliA)D270 because N (gamma') conformation "forbidden" or filtered. T0547 347 :NKLIL 1cliA 265 :TQAVI T0547 353 :KQ 1cliA 271 :ES Number of specific fragments extracted= 2 number of extra gaps= 2 total=97165 # 1quqA.346.46 read from T0547.t06.many.frag # found chain 1quqA in template set Warning: unaligning (T0547)E346 (1quqA)N89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1quqA)M97 because T (delta_L) conformation "forbidden" or filtered. T0547 347 :NKLILKK 1quqA 90 :IVYKIDD Number of specific fragments extracted= 1 number of extra gaps= 2 total=97166 # 1bob.346.132 read from T0547.t06.many.frag # found chain 1bob in template set Warning: unaligning (T0547)K348 (1bob)V135 because E (beta_S) conformation "forbidden" or filtered. T0547 346 :EN 1bob 133 :EF T0547 349 :LILKKQ 1bob 136 :VYKSSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=97168 # 2nacA.346.274 read from T0547.t06.many.frag # found chain 2nacA in template set Warning: unaligning (T0547)K352 (2nacA)N281 because D (zeta) conformation "forbidden" or filtered. T0547 346 :ENKLIL 2nacA 275 :RGAYIV T0547 353 :KQ 2nacA 282 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=97170 # 1zbxB.346.124 read from T0547.t06.many.frag # found chain 1zbxB in template set T0547 346 :ENKLILKKQ 1zbxB 604 :TVQYLYDDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97171 # 3bamA.346.104 read from T0547.t06.many.frag # found chain 3bamA in training set T0547 346 :ENKLILKKQ 3bamA 105 :LKRVGMEFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97172 # 1tuoA.347.284 read from T0547.t06.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)N347 (1tuoA)G285 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1tuoA)N290 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLIL 1tuoA 286 :RAVK T0547 353 :KQN 1tuoA 291 :FAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=97174 # 1gx5A.347.380 read from T0547.t06.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)K348 (1gx5A)Y382 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. T0547 347 :N 1gx5A 381 :V T0547 350 :IL 1gx5A 384 :LT T0547 353 :KQN 1gx5A 387 :DPT Number of specific fragments extracted= 3 number of extra gaps= 2 total=97177 # 2fimA.347.154 read from T0547.t06.many.frag # found chain 2fimA in template set T0547 347 :NKLILKKQN 2fimA 368 :MTVIIPGMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97178 # 1yt8A.347.347 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 347 :NKLILKKQN 1yt8A 348 :QVAVLDGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97179 # 7odcA.347.313 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Q354 (7odcA)G321 because Y (epsilon') conformation "forbidden" or filtered. T0547 347 :NKLILKK 7odcA 314 :FMYYVND T0547 355 :N 7odcA 322 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=97181 # 1knwA.347.293 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 347 :NKLILKKQN 1knwA 294 :HFVLVDAGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=97182 # 1fy7A.347.35 read from T0547.t06.many.frag # found chain 1fy7A in template set T0547 347 :NKLILKKQN 1fy7A 193 :DFIYIDDFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=97183 # 1fjgL.347.65 read from T0547.t06.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)N347 (1fjgL)V66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1fjgL)G72 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1fjgL)G74 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLILK 1fjgL 67 :TAYIP T0547 354 :Q 1fjgL 73 :E Number of specific fragments extracted= 2 number of extra gaps= 3 total=97185 # 2jdxA.347.329 read from T0547.t06.many.frag # found chain 2jdxA in template set T0547 347 :NKLILKKQN 2jdxA 368 :KRVMVDANE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97186 # 1wdaA.347.370 read from T0547.t06.many.frag # found chain 1wdaA in template set T0547 347 :NKLILKKQN 1wdaA 364 :LPVVFDSPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97187 # 1zymA.347.215 read from T0547.t06.many.frag # found chain 1zymA in template set Warning: unaligning (T0547)K353 (1zymA)A222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1zymA)N224 because G (3-10) conformation "forbidden" or filtered. T0547 347 :NKLILK 1zymA 216 :DYLILD T0547 354 :Q 1zymA 223 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=97189 # 1vpbA.347.246 read from T0547.t06.many.frag # found chain 1vpbA in training set T0547 347 :NKLILKKQN 1vpbA 235 :YTMVVDPMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97190 # 1rtqA.347.188 read from T0547.t06.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)Q354 (1rtqA)Y196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1rtqA)T197 because E (beta_S) conformation "forbidden" or filtered. T0547 347 :NKLILKK 1rtqA 189 :DVVFITD Number of specific fragments extracted= 1 number of extra gaps= 1 total=97191 # 1yj7A.347.37 read from T0547.t06.many.frag # found chain 1yj7A in training set T0547 347 :NKLILKKQN 1yj7A 57 :MTLSVAAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=97192 # 1nuyA.347.206 read from T0547.t06.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)L351 (1nuyA)I1211 because Y (epsilon') conformation "forbidden" or filtered. T0547 347 :NKLI 1nuyA 1207 :SIYS T0547 352 :KKQN 1nuyA 1212 :NEGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=97194 # 1ztpA.347.35 read from T0547.t06.many.frag # found chain 1ztpA in template set Warning: unaligning (T0547)Q354 because of BadResidue code BAD_PEPTIDE in next template residue (1ztpA)T44 Warning: unaligning (T0547)N355 because of BadResidue code BAD_PEPTIDE at template residue (1ztpA)T44 T0547 347 :NKLILKK 1ztpA 36 :PWLVFDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=97195 # 1cliA.347.264 read from T0547.t06.many.frag # found chain 1cliA in template set T0547 347 :NKLILKKQN 1cliA 265 :TQAVIDESS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97196 # 1r7mA.347.195 read from T0547.t06.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)K348 (1r7mA)I197 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1r7mA)D201 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :N 1r7mA 196 :P T0547 349 :LIL 1r7mA 198 :IYI T0547 353 :KQN 1r7mA 202 :SMS Number of specific fragments extracted= 3 number of extra gaps= 2 total=97199 # 1gk9A.347.16 read from T0547.t06.many.frag # found chain 1gk9A in training set Warning: unaligning (T0547)L351 (1gk9A)A21 because Y (epsilon') conformation "forbidden" or filtered. T0547 347 :NKLI 1gk9A 17 :PHIY T0547 352 :KKQN 1gk9A 22 :NDTW Number of specific fragments extracted= 2 number of extra gaps= 1 total=97201 # 1h70A.347.210 read from T0547.t06.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)N347 (1h70A)E210 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1h70A)R211 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1h70A)A216 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1h70A)G217 because T (delta_L) conformation "forbidden" or filtered. T0547 349 :LILK 1h70A 212 :VIMP T0547 355 :N 1h70A 218 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=97203 # 1utcA.347.48 read from T0547.t06.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)K352 (1utcA)D54 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :NKLIL 1utcA 49 :QVVII T0547 353 :KQN 1utcA 55 :MND Number of specific fragments extracted= 2 number of extra gaps= 1 total=97205 # 1atg.347.105 read from T0547.t06.many.frag # found chain 1atg in training set Warning: unaligning (T0547)K352 (1atg)N112 because P (beta_P) conformation "forbidden" or filtered. T0547 347 :NKLIL 1atg 107 :HIAIS T0547 353 :KQN 1atg 113 :PQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=97207 # 1xy7A.347.27 read from T0547.t06.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)N347 (1xy7A)Q28 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1xy7A)E33 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLIL 1xy7A 29 :MLLV T0547 353 :KQN 1xy7A 34 :AQK Number of specific fragments extracted= 2 number of extra gaps= 2 total=97209 # 2pth.347.57 read from T0547.t06.many.frag # found chain 2pth in training set Warning: unaligning (T0547)L351 (2pth)V62 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (2pth)P63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (2pth)F66 because S (epsilon) conformation "forbidden" or filtered. T0547 347 :NKLI 2pth 58 :VRLL T0547 353 :KQ 2pth 64 :TT Number of specific fragments extracted= 2 number of extra gaps= 2 total=97211 # 1f2vA.347.192 read from T0547.t06.many.frag # found chain 1f2vA in template set Warning: unaligning (T0547)N347 (1f2vA)P184 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1f2vA)F185 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1f2vA)G190 because S (epsilon) conformation "forbidden" or filtered. T0547 349 :LILK 1f2vA 186 :AIVR T0547 354 :QN 1f2vA 191 :RL Number of specific fragments extracted= 2 number of extra gaps= 2 total=97213 # 1vb3A.347.326 read from T0547.t06.many.frag # found chain 1vb3A in template set Warning: unaligning (T0547)N347 (1vb3A)G327 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K348 (1vb3A)Y328 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1vb3A)D332 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LIL 1vb3A 329 :AAV T0547 353 :KQN 1vb3A 333 :DET Number of specific fragments extracted= 2 number of extra gaps= 2 total=97215 # 1kjqA.347.229 read from T0547.t06.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)K352 (1kjqA)P236 because C (cis) conformation "forbidden" or filtered. T0547 347 :NKLIL 1kjqA 231 :RESWQ T0547 353 :KQN 1kjqA 237 :QQM Number of specific fragments extracted= 2 number of extra gaps= 1 total=97217 # 1quqA.347.47 read from T0547.t06.many.frag # found chain 1quqA in template set Warning: unaligning (T0547)Q354 (1quqA)M97 because T (delta_L) conformation "forbidden" or filtered. T0547 347 :NKLILKK 1quqA 90 :IVYKIDD T0547 355 :N 1quqA 98 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=97219 # 2nacA.347.275 read from T0547.t06.many.frag # found chain 2nacA in template set T0547 347 :NKLILKKQN 2nacA 276 :GAYIVNTAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97220 # 1o2dA.347.177 read from T0547.t06.many.frag # found chain 1o2dA in training set Warning: unaligning (T0547)K352 (1o2dA)D171 because D (zeta) conformation "forbidden" or filtered. T0547 347 :NKLIL 1o2dA 166 :VYAFL T0547 353 :KQN 1o2dA 172 :PRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=97222 # 1tuoA.348.285 read from T0547.t06.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)K352 (1tuoA)N290 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLIL 1tuoA 286 :RAVK T0547 353 :KQNP 1tuoA 291 :FAVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=97224 # 2fimA.348.155 read from T0547.t06.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)K352 (2fimA)P373 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLIL 2fimA 369 :TVII T0547 353 :KQNP 2fimA 374 :GMSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=97226 # 1r7mA.348.196 read from T0547.t06.many.frag # found chain 1r7mA in template set T0547 348 :KLILKKQNP 1r7mA 197 :IIYIDSMSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=97227 # 1yt8A.348.348 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)Q354 (1yt8A)L355 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :KLILKK 1yt8A 349 :VAVLDG T0547 355 :NP 1yt8A 356 :SE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97229 # 2jdxA.348.330 read from T0547.t06.many.frag # found chain 2jdxA in template set T0547 348 :KLILKKQNP 2jdxA 369 :RVMVDANEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=97230 # 1gx5A.348.381 read from T0547.t06.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L351 (1gx5A)T385 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1gx5A)D387 because P (beta_P) conformation "forbidden" or filtered. T0547 348 :K 1gx5A 382 :Y T0547 350 :I 1gx5A 384 :L T0547 354 :QNP 1gx5A 388 :PTT Number of specific fragments extracted= 3 number of extra gaps= 2 total=97233 # 1h70A.348.211 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 348 :KLILKKQNP 1h70A 211 :RVIMPAGYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97234 # 1cliA.348.265 read from T0547.t06.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)P356 (1cliA)W274 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLILKKQN 1cliA 266 :QAVIDESS Number of specific fragments extracted= 1 number of extra gaps= 1 total=97235 # 1fy7A.348.36 read from T0547.t06.many.frag # found chain 1fy7A in template set Warning: unaligning (T0547)P356 (1fy7A)L202 because T (delta_L) conformation "forbidden" or filtered. T0547 348 :KLILKKQN 1fy7A 194 :FIYIDDFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=97236 # 1zymA.348.216 read from T0547.t06.many.frag # found chain 1zymA in template set Warning: unaligning (T0547)K353 (1zymA)A222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1zymA)N225 because L (left) conformation "forbidden" or filtered. T0547 348 :KLILK 1zymA 217 :YLILD T0547 354 :QN 1zymA 223 :VN Number of specific fragments extracted= 2 number of extra gaps= 2 total=97238 # 1xy7A.348.28 read from T0547.t06.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)Q354 (1xy7A)Q35 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1xy7A)K36 because G (3-10) conformation "forbidden" or filtered. T0547 348 :KLILKK 1xy7A 29 :MLLVEA T0547 356 :P 1xy7A 37 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=97240 # 1atg.348.106 read from T0547.t06.many.frag # found chain 1atg in training set Warning: unaligning (T0547)K348 (1atg)I108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1atg)A116 because D (zeta) conformation "forbidden" or filtered. T0547 349 :LILKKQN 1atg 109 :AISNPQI Number of specific fragments extracted= 1 number of extra gaps= 2 total=97241 # 1vpbA.348.247 read from T0547.t06.many.frag # found chain 1vpbA in training set Warning: unaligning (T0547)N355 (1vpbA)N243 because G (3-10) conformation "forbidden" or filtered. T0547 348 :KLILKKQ 1vpbA 236 :TMVVDPM T0547 356 :P 1vpbA 244 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=97243 # 1gk9A.348.17 read from T0547.t06.many.frag # found chain 1gk9A in training set Warning: unaligning (T0547)L351 (1gk9A)A21 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLI 1gk9A 18 :HIY T0547 352 :KKQNP 1gk9A 22 :NDTWH Number of specific fragments extracted= 2 number of extra gaps= 1 total=97245 # 1nuyA.348.207 read from T0547.t06.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)K352 (1nuyA)N1212 because N (gamma') conformation "forbidden" or filtered. T0547 348 :KLIL 1nuyA 1208 :IYSI T0547 353 :KQNP 1nuyA 1213 :EGYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=97247 # 1rtqA.348.189 read from T0547.t06.many.frag # found chain 1rtqA in training set Warning: unaligning (T0547)Q354 (1rtqA)Y196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1rtqA)D198 because E (beta_S) conformation "forbidden" or filtered. T0547 348 :KLILKK 1rtqA 190 :VVFITD T0547 355 :N 1rtqA 197 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=97249 # 1knwA.348.294 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 348 :KLILKKQNP 1knwA 295 :FVLVDAGFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97250 # 1yj7A.348.38 read from T0547.t06.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)N355 (1yj7A)D65 because G (3-10) conformation "forbidden" or filtered. T0547 348 :KLILKKQ 1yj7A 58 :TLSVAAA T0547 356 :P 1yj7A 66 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=97252 # 1fjgL.348.66 read from T0547.t06.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)K352 (1fjgL)P71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1fjgL)G74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1fjgL)H75 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLIL 1fjgL 67 :TAYI T0547 353 :KQ 1fjgL 72 :GE Number of specific fragments extracted= 2 number of extra gaps= 2 total=97254 # 1tf5A.348.458 read from T0547.t06.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)K348 (1tf5A)H456 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1tf5A)A461 because L (left) conformation "forbidden" or filtered. T0547 349 :LILK 1tf5A 457 :QVLN T0547 354 :QNP 1tf5A 462 :KNH Number of specific fragments extracted= 2 number of extra gaps= 2 total=97256 # 1ztpA.348.36 read from T0547.t06.many.frag # found chain 1ztpA in template set Warning: unaligning (T0547)Q354 because of BadResidue code BAD_PEPTIDE in next template residue (1ztpA)T44 Warning: unaligning (T0547)N355 because of BadResidue code BAD_PEPTIDE at template residue (1ztpA)T44 Warning: unaligning (T0547)P356 (1ztpA)T45 because E (beta_S) conformation "forbidden" or filtered. T0547 348 :KLILKK 1ztpA 37 :WLVFDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=97257 # 1ou8A.348.27 read from T0547.t06.many.frag # found chain 1ou8A in training set T0547 348 :KLILKKQNP 1ou8A 28 :YLVVDATYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97258 # 7odcA.348.314 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Q354 (7odcA)G321 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLILKK 7odcA 315 :MYYVND T0547 355 :NP 7odcA 322 :VY Number of specific fragments extracted= 2 number of extra gaps= 1 total=97260 # 1utcA.348.49 read from T0547.t06.many.frag # found chain 1utcA in template set T0547 348 :KLILKKQNP 1utcA 50 :VVIIDMNDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97261 # 1vb3A.348.327 read from T0547.t06.many.frag # found chain 1vb3A in template set T0547 348 :KLILKKQNP 1vb3A 328 :YAAVDDETT Number of specific fragments extracted= 1 number of extra gaps= 0 total=97262 # 1quqA.348.48 read from T0547.t06.many.frag # found chain 1quqA in template set Warning: unaligning (T0547)K352 (1quqA)D95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1quqA)A99 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLIL 1quqA 91 :VYKI T0547 353 :KQN 1quqA 96 :DMT Number of specific fragments extracted= 2 number of extra gaps= 2 total=97264 # 1wdaA.348.371 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)P356 (1wdaA)N373 because L (left) conformation "forbidden" or filtered. T0547 348 :KLILKKQN 1wdaA 365 :PVVFDSPR Number of specific fragments extracted= 1 number of extra gaps= 1 total=97265 # 2a14A.348.79 read from T0547.t06.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)K348 (2a14A)D80 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (2a14A)T87 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LILKKQ 2a14A 81 :ITLSDF T0547 356 :P 2a14A 88 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=97267 # 2arhA.348.64 read from T0547.t06.many.frag # found chain 2arhA in template set Warning: unaligning (T0547)K352 (2arhA)F67 because Y (epsilon') conformation "forbidden" or filtered. T0547 348 :KLIL 2arhA 63 :WVEV T0547 353 :KQNP 2arhA 68 :GVNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=97269 # 2pth.348.58 read from T0547.t06.many.frag # found chain 2pth in training set Warning: unaligning (T0547)K352 (2pth)P63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (2pth)F66 because S (epsilon) conformation "forbidden" or filtered. T0547 348 :KLIL 2pth 59 :RLLV T0547 353 :KQ 2pth 64 :TT T0547 356 :P 2pth 67 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=97272 # 1h70A.349.212 read from T0547.t06.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)Q354 (1h70A)G217 because T (delta_L) conformation "forbidden" or filtered. T0547 349 :LILKK 1h70A 212 :VIMPA T0547 355 :NPK 1h70A 218 :YPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=97274 # 2jdxA.349.331 read from T0547.t06.many.frag # found chain 2jdxA in template set T0547 349 :LILKKQNPK 2jdxA 370 :VMVDANEVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97275 # 1tuoA.349.286 read from T0547.t06.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)N355 (1tuoA)V293 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LILKKQ 1tuoA 287 :AVKNFA T0547 356 :PK 1tuoA 294 :TW Number of specific fragments extracted= 2 number of extra gaps= 1 total=97277 # 2a14A.349.80 read from T0547.t06.many.frag # found chain 2a14A in training set T0547 349 :LILKKQNPK 2a14A 81 :ITLSDFTDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97278 # 2fimA.349.156 read from T0547.t06.many.frag # found chain 2fimA in template set T0547 349 :LILKKQNPK 2fimA 370 :VIIPGMSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97279 # 1wqgA.349.64 read from T0547.t06.many.frag # found chain 1wqgA in template set Warning: unaligning (T0547)K353 (1wqgA)P69 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LILK 1wqgA 65 :VVIK T0547 354 :QNPK 1wqgA 70 :YEAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=97281 # 1ou8A.349.28 read from T0547.t06.many.frag # found chain 1ou8A in training set T0547 349 :LILKKQNPK 1ou8A 29 :LVVDATYLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=97282 # 1r7mA.349.197 read from T0547.t06.many.frag # found chain 1r7mA in template set Warning: unaligning (T0547)K352 (1r7mA)D201 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LIL 1r7mA 198 :IYI T0547 353 :KQNPK 1r7mA 202 :SMSYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=97284 # 2arhA.349.65 read from T0547.t06.many.frag # found chain 2arhA in template set Warning: unaligning (T0547)K352 (2arhA)F67 because Y (epsilon') conformation "forbidden" or filtered. T0547 349 :LIL 2arhA 64 :VEV T0547 353 :KQNPK 2arhA 68 :GVNPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=97286 # 1yt8A.349.349 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)K353 (1yt8A)G354 because T (delta_L) conformation "forbidden" or filtered. T0547 349 :LILK 1yt8A 350 :AVLD T0547 354 :QNPK 1yt8A 355 :LSEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=97288 # 1zymA.349.217 read from T0547.t06.many.frag # found chain 1zymA in template set Warning: unaligning (T0547)P356 (1zymA)N225 because L (left) conformation "forbidden" or filtered. T0547 349 :LILKKQN 1zymA 218 :LILDAVN T0547 357 :K 1zymA 226 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=97290 # 1q2lA.349.452 read from T0547.t06.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)L349 (1q2lA)Y476 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :ILKKQNPK 1q2lA 477 :QVDKISAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=97291 # 1m1nA.349.397 read from T0547.t06.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)K353 (1m1nA)D403 because L (left) conformation "forbidden" or filtered. T0547 349 :LILK 1m1nA 399 :LLYD T0547 354 :QNPK 1m1nA 404 :VTGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=97293 # 1x9iA.349.211 read from T0547.t06.many.frag # found chain 1x9iA in training set Warning: unaligning (T0547)K352 (1x9iA)P215 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1x9iA)H219 because G (3-10) conformation "forbidden" or filtered. T0547 349 :LIL 1x9iA 212 :EIL T0547 353 :KQN 1x9iA 216 :EAH T0547 357 :K 1x9iA 220 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=97296 # 1g8mA.349.341 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)K353 (1g8mA)G346 because Y (epsilon') conformation "forbidden" or filtered. T0547 349 :LILK 1g8mA 342 :VVAP T0547 354 :QNPK 1g8mA 347 :YEEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97298 # 1gx5A.349.382 read from T0547.t06.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)L349 (1gx5A)Y383 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1gx5A)R386 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1gx5A)D387 because P (beta_P) conformation "forbidden" or filtered. T0547 350 :IL 1gx5A 384 :LT T0547 354 :QNPK 1gx5A 388 :PTTP Number of specific fragments extracted= 2 number of extra gaps= 2 total=97300 1wj9A expands to /projects/compbio/data/pdb/1wj9.pdb.gz 1wj9A:# 1wj9A.349.5 read from T0547.t06.many.frag # adding 1wj9A to template set # found chain 1wj9A in template set T0547 349 :LILKKQNPK 1wj9A 6 :LVLNPASRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97301 # 1wwhA.349.61 read from T0547.t06.many.frag # found chain 1wwhA in template set T0547 349 :LILKKQNPK 1wwhA 210 :MHIRYQSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97302 # 1s9rA.349.360 read from T0547.t06.many.frag # found chain 1s9rA in training set Warning: unaligning (T0547)L351 (1s9rA)G363 because Y (epsilon') conformation "forbidden" or filtered. T0547 349 :LI 1s9rA 361 :VI T0547 352 :KKQNPK 1s9rA 364 :YSRNEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=97304 # 1gk9A.349.18 read from T0547.t06.many.frag # found chain 1gk9A in training set Warning: unaligning (T0547)L351 (1gk9A)A21 because Y (epsilon') conformation "forbidden" or filtered. T0547 349 :LI 1gk9A 19 :IY T0547 352 :KKQNPK 1gk9A 22 :NDTWHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=97306 # 1cliA.349.266 read from T0547.t06.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)P356 (1cliA)W274 because Y (epsilon') conformation "forbidden" or filtered. T0547 349 :LILKKQN 1cliA 267 :AVIDESS T0547 357 :K 1cliA 275 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=97308 # 1tf5A.349.459 read from T0547.t06.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)K353 (1tf5A)A461 because L (left) conformation "forbidden" or filtered. T0547 349 :LILK 1tf5A 457 :QVLN T0547 354 :QNPK 1tf5A 462 :KNHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97310 # 1quqA.349.49 read from T0547.t06.many.frag # found chain 1quqA in template set Warning: unaligning (T0547)Q354 (1quqA)M97 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1quqA)A99 because Y (epsilon') conformation "forbidden" or filtered. T0547 349 :LILKK 1quqA 92 :YKIDD T0547 355 :N 1quqA 98 :T T0547 357 :K 1quqA 100 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=97313 # 2atfA.349.60 read from T0547.t06.many.frag # found chain 2atfA in template set Warning: unaligning (T0547)L349 (2atfA)N61 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (2atfA)G66 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (2atfA)N67 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (2atfA)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 350 :ILKK 2atfA 62 :LVDQ T0547 357 :K 2atfA 69 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=97315 # 1wvqA.349.60 read from T0547.t06.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)L351 (1wvqA)H63 because Y (epsilon') conformation "forbidden" or filtered. T0547 349 :LI 1wvqA 61 :VR T0547 352 :KKQNPK 1wvqA 64 :EANDEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97317 1yewA expands to /projects/compbio/data/pdb/1yew.pdb.gz 1yewA:# 1yewA.349.124 read from T0547.t06.many.frag # adding 1yewA to template set # found chain 1yewA in template set Warning: unaligning (T0547)K353 (1yewA)G161 because S (epsilon) conformation "forbidden" or filtered. T0547 349 :LILK 1yewA 157 :ITVE T0547 354 :QNPK 1yewA 162 :SMSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97319 # 1vpbA.349.248 read from T0547.t06.many.frag # found chain 1vpbA in training set T0547 349 :LILKKQNPK 1vpbA 237 :MVVDPMNSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97320 # 1ztpA.349.37 read from T0547.t06.many.frag # found chain 1ztpA in template set Warning: unaligning (T0547)Q354 because of BadResidue code BAD_PEPTIDE in next template residue (1ztpA)T44 Warning: unaligning (T0547)N355 because of BadResidue code BAD_PEPTIDE at template residue (1ztpA)T44 Warning: unaligning (T0547)P356 (1ztpA)T45 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K357 (1ztpA)P46 because P (beta_P) conformation "forbidden" or filtered. T0547 349 :LILKK 1ztpA 38 :LVFDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=97321 # 1g61A.349.207 read from T0547.t06.many.frag # found chain 1g61A in training set T0547 349 :LILKKQNPK 1g61A 2208 :VVGGDTTGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97322 # 1xy7A.349.29 read from T0547.t06.many.frag # found chain 1xy7A in training set Warning: unaligning (T0547)K352 (1xy7A)E33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1xy7A)Q35 because T (delta_L) conformation "forbidden" or filtered. T0547 349 :LIL 1xy7A 30 :LLV T0547 353 :K 1xy7A 34 :A T0547 355 :NPK 1xy7A 36 :KVG Number of specific fragments extracted= 3 number of extra gaps= 2 total=97325 # 2a14A.350.81 read from T0547.t06.many.frag # found chain 2a14A in training set T0547 350 :ILKKQNPKL 2a14A 82 :TLSDFTDRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97326 # 1h70A.350.213 read from T0547.t06.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)Q354 (1h70A)G217 because T (delta_L) conformation "forbidden" or filtered. T0547 350 :ILKK 1h70A 213 :IMPA T0547 355 :NPKL 1h70A 218 :YPRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=97328 # 2jdxA.350.332 read from T0547.t06.many.frag # found chain 2jdxA in template set T0547 350 :ILKKQNPKL 2jdxA 371 :MVDANEVPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97329 # 1wqgA.350.65 read from T0547.t06.many.frag # found chain 1wqgA in template set T0547 350 :ILKKQNPKL 1wqgA 66 :VIKPYEANQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=97330 # 1tuoA.350.287 read from T0547.t06.many.frag # found chain 1tuoA in training set Warning: unaligning (T0547)K352 (1tuoA)N290 because P (beta_P) conformation "forbidden" or filtered. T0547 350 :IL 1tuoA 288 :VK T0547 353 :KQNPKL 1tuoA 291 :FAVTWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=97332 # 2arhA.350.66 read from T0547.t06.many.frag # found chain 2arhA in template set Warning: unaligning (T0547)K352 (2arhA)F67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (2arhA)G68 because L (left) conformation "forbidden" or filtered. T0547 350 :IL 2arhA 65 :EV T0547 354 :QNPKL 2arhA 69 :VNPNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=97334 # 1q2lA.350.453 read from T0547.t06.many.frag # found chain 1q2lA in template set T0547 350 :ILKKQNPKL 1q2lA 477 :QVDKISAQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=97335 # 1m1nA.350.398 read from T0547.t06.many.frag # found chain 1m1nA in training set T0547 350 :ILKKQNPKL 1m1nA 400 :LYDDVTGYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97336 # 1g8mA.350.342 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)L351 (1g8mA)A344 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1g8mA)G346 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :I 1g8mA 343 :V T0547 352 :K 1g8mA 345 :P T0547 354 :QNPKL 1g8mA 347 :YEEEA Number of specific fragments extracted= 3 number of extra gaps= 2 total=97339 # 1s9rA.350.361 read from T0547.t06.many.frag # found chain 1s9rA in training set Warning: unaligning (T0547)L351 (1s9rA)G363 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :I 1s9rA 362 :I T0547 352 :KKQNPKL 1s9rA 364 :YSRNEKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=97341 # 1ou8A.350.29 read from T0547.t06.many.frag # found chain 1ou8A in training set Warning: unaligning (T0547)K352 (1ou8A)D32 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)K357 (1ou8A)G37 because T (delta_L) conformation "forbidden" or filtered. T0547 350 :IL 1ou8A 30 :VV T0547 353 :KQNP 1ou8A 33 :ATYL T0547 358 :L 1ou8A 38 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=97344 # 1efyA.350.199 read from T0547.t06.many.frag # found chain 1efyA in template set Warning: unaligning (T0547)K352 (1efyA)G863 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1efyA)S864 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :IL 1efyA 861 :WH T0547 354 :QNPKL 1efyA 865 :RTTNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=97346 # 1wj9A.350.6 read from T0547.t06.many.frag # found chain 1wj9A in template set T0547 350 :ILKKQNPKL 1wj9A 7 :VLNPASRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97347 # 1wvqA.350.61 read from T0547.t06.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)K353 (1wvqA)A65 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :ILK 1wvqA 62 :RHE T0547 354 :QNPKL 1wvqA 66 :NDEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=97349 # 1g61A.350.208 read from T0547.t06.many.frag # found chain 1g61A in training set T0547 350 :ILKKQNPKL 1g61A 2209 :VGGDTTGPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97350 # 1gxuA.350.48 read from T0547.t06.many.frag # found chain 1gxuA in training set T0547 350 :ILKKQNP 1gxuA 49 :RLREDPE T0547 358 :L 1gxuA 57 :F Number of specific fragments extracted= 2 number of extra gaps= 0 total=97352 # 1ysjA.350.318 read from T0547.t06.many.frag # found chain 1ysjA in template set T0547 350 :ILKKQNPKL 1ysjA 295 :QNDGTFLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97353 # 1x9iA.350.212 read from T0547.t06.many.frag # found chain 1x9iA in training set Warning: unaligning (T0547)K352 (1x9iA)P215 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1x9iA)H219 because G (3-10) conformation "forbidden" or filtered. T0547 350 :IL 1x9iA 213 :IL T0547 353 :KQN 1x9iA 216 :EAH T0547 357 :KL 1x9iA 220 :NW Number of specific fragments extracted= 3 number of extra gaps= 2 total=97356 # 1tf5A.350.460 read from T0547.t06.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)K352 (1tf5A)N460 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1tf5A)A461 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1tf5A)N463 because D (zeta) conformation "forbidden" or filtered. T0547 350 :IL 1tf5A 458 :VL T0547 354 :Q 1tf5A 462 :K T0547 356 :PKL 1tf5A 464 :HER Number of specific fragments extracted= 3 number of extra gaps= 2 total=97359 # 1l7dA.350.198 read from T0547.t06.many.frag # found chain 1l7dA in template set Warning: unaligning (T0547)N355 (1l7dA)R204 because P (beta_P) conformation "forbidden" or filtered. T0547 350 :ILKKQ 1l7dA 199 :MATDV T0547 356 :PKL 1l7dA 205 :AAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=97361 # 1q9uA.350.55 read from T0547.t06.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)K353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1q9uA)N58 Warning: unaligning (T0547)N355 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q9uA)N58 T0547 350 :ILK 1q9uA 53 :ILE T0547 356 :PKL 1q9uA 59 :PQE Number of specific fragments extracted= 2 number of extra gaps= 0 total=97363 # 1wwhA.350.62 read from T0547.t06.many.frag # found chain 1wwhA in template set T0547 350 :ILKKQNPKL 1wwhA 211 :HIRYQSKLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=97364 # 1r7mA.350.198 read from T0547.t06.many.frag # found chain 1r7mA in template set T0547 350 :ILKKQNPKL 1r7mA 199 :YIDSMSYLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97365 # 2czlA.350.120 read from T0547.t06.many.frag # found chain 2czlA in training set Warning: unaligning (T0547)L351 (2czlA)V122 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (2czlA)D127 because G (3-10) conformation "forbidden" or filtered. T0547 350 :I 2czlA 121 :P T0547 352 :KKQN 2czlA 123 :EVRY T0547 357 :KL 2czlA 128 :RI Number of specific fragments extracted= 3 number of extra gaps= 2 total=97368 # 2fimA.350.157 read from T0547.t06.many.frag # found chain 2fimA in template set Warning: unaligning (T0547)L358 (2fimA)N379 because L (left) conformation "forbidden" or filtered. T0547 350 :ILKKQNPK 2fimA 371 :IIPGMSAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=97369 # 1yt8A.350.350 read from T0547.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0547)N355 (1yt8A)S356 because E (beta_S) conformation "forbidden" or filtered. T0547 350 :ILKKQ 1yt8A 351 :VLDGL T0547 356 :PKL 1yt8A 357 :EAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=97371 # 1hqsA.350.280 read from T0547.t06.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)Q354 (1hqsA)I285 because P (beta_P) conformation "forbidden" or filtered. T0547 350 :ILKK 1hqsA 281 :IKDS T0547 355 :NPKL 1hqsA 286 :ADIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=97373 # 1yewA.350.125 read from T0547.t06.many.frag # found chain 1yewA in template set Warning: unaligning (T0547)K353 (1yewA)G161 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1yewA)S162 because E (beta_S) conformation "forbidden" or filtered. T0547 350 :ILK 1yewA 158 :TVE T0547 355 :NPKL 1yewA 163 :MSEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=97375 # 1izcA.350.250 read from T0547.t06.many.frag # found chain 1izcA in training set Warning: unaligning (T0547)K353 (1izcA)A254 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1izcA)S256 because E (beta_S) conformation "forbidden" or filtered. T0547 350 :ILK 1izcA 251 :FGG T0547 354 :Q 1izcA 255 :L T0547 356 :PKL 1izcA 257 :VDM Number of specific fragments extracted= 3 number of extra gaps= 2 total=97378 # 1k87A.350.482 read from T0547.t06.many.frag # found chain 1k87A in template set Warning: unaligning (T0547)K353 (1k87A)T486 because Y (epsilon') conformation "forbidden" or filtered. T0547 350 :ILK 1k87A 483 :QFA T0547 354 :QNPKL 1k87A 487 :HNAHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=97380 # 1h70A.351.214 read from T0547.t06.many.frag # found chain 1h70A in training set Warning: unaligning (T0547)Q354 (1h70A)G217 because T (delta_L) conformation "forbidden" or filtered. T0547 351 :LKK 1h70A 214 :MPA T0547 355 :NPKLI 1h70A 218 :YPRTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=97382 # 2a14A.351.82 read from T0547.t06.many.frag # found chain 2a14A in training set T0547 351 :LKKQNPKLI 2a14A 83 :LSDFTDRNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97383 # 2jdxA.351.333 read from T0547.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0547)K352 (2jdxA)D373 because P (beta_P) conformation "forbidden" or filtered. T0547 351 :L 2jdxA 372 :V T0547 353 :KQNPKLI 2jdxA 374 :ANEVPIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=97385 # 1wqgA.351.66 read from T0547.t06.many.frag # found chain 1wqgA in template set T0547 351 :LKKQNPKLI 1wqgA 67 :IKPYEANQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97386 # 1efyA.351.200 read from T0547.t06.many.frag # found chain 1efyA in template set Warning: unaligning (T0547)K353 (1efyA)S864 because Y (epsilon') conformation "forbidden" or filtered. T0547 351 :LK 1efyA 862 :HG T0547 354 :QNPKLI 1efyA 865 :RTTNFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=97388 # 2czlA.351.121 read from T0547.t06.many.frag # found chain 2czlA in training set Warning: unaligning (T0547)L351 (2czlA)V122 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (2czlA)E123 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (2czlA)D127 because G (3-10) conformation "forbidden" or filtered. T0547 353 :KQN 2czlA 124 :VRY T0547 357 :KLI 2czlA 128 :RIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=97390 # 1wvqA.351.62 read from T0547.t06.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)L351 (1wvqA)H63 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 (1wvqA)A65 because Y (epsilon') conformation "forbidden" or filtered. T0547 352 :K 1wvqA 64 :E T0547 354 :QNPKLI 1wvqA 66 :NDEELR Number of specific fragments extracted= 2 number of extra gaps= 2 total=97392 # 1g61A.351.209 read from T0547.t06.many.frag # found chain 1g61A in training set T0547 351 :LKKQNPKLI 1g61A 2210 :GGDTTGPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97393 # 1q2lA.351.454 read from T0547.t06.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)K352 (1q2lA)D479 because E (beta_S) conformation "forbidden" or filtered. T0547 351 :L 1q2lA 478 :V T0547 353 :KQNPKLI 1q2lA 480 :KISAQTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=97395 # 1hqsA.351.281 read from T0547.t06.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)Q354 (1hqsA)I285 because P (beta_P) conformation "forbidden" or filtered. T0547 351 :LKK 1hqsA 282 :KDS T0547 355 :NPKLI 1hqsA 286 :ADIFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=97397 # 1g8mA.351.343 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)L351 (1g8mA)A344 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q354 (1g8mA)Y347 because E (beta_S) conformation "forbidden" or filtered. T0547 352 :KK 1g8mA 345 :PG T0547 355 :NPKLI 1g8mA 348 :EEEAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=97399 # 1tuoA.351.288 read from T0547.t06.many.frag # found chain 1tuoA in training set T0547 351 :LKKQNPKLI 1tuoA 289 :KNFAVTWLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97400 # 1gxuA.351.49 read from T0547.t06.many.frag # found chain 1gxuA in training set T0547 351 :LKKQNP 1gxuA 50 :LREDPE T0547 358 :LI 1gxuA 57 :FL Number of specific fragments extracted= 2 number of extra gaps= 0 total=97402 # 2arhA.351.67 read from T0547.t06.many.frag # found chain 2arhA in template set Warning: unaligning (T0547)K353 (2arhA)G68 because L (left) conformation "forbidden" or filtered. T0547 351 :LK 2arhA 66 :VF T0547 354 :QNPKLI 2arhA 69 :VNPNLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=97404 # 1s9rA.351.362 read from T0547.t06.many.frag # found chain 1s9rA in training set Warning: unaligning (T0547)L351 (1s9rA)G363 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K352 (1s9rA)Y364 because P (beta_P) conformation "forbidden" or filtered. T0547 353 :KQNPKLI 1s9rA 365 :SRNEKTN Number of specific fragments extracted= 1 number of extra gaps= 1 total=97405 # 1k87A.351.483 read from T0547.t06.many.frag # found chain 1k87A in template set T0547 351 :LKKQNPKLI 1k87A 484 :FATHNAHTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97406 # 1nuyA.351.211 read from T0547.t06.many.frag # found chain 1nuyA in training set T0547 351 :LKKQNPKLI 1nuyA 1212 :NEGYAKEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=97407 # 1vjvA.351.180 read from T0547.t06.many.frag # found chain 1vjvA in training set Warning: unaligning (T0547)K352 (1vjvA)S266 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1vjvA)N270 because G (3-10) conformation "forbidden" or filtered. T0547 351 :L 1vjvA 265 :I T0547 353 :KQN 1vjvA 267 :GTT T0547 357 :KLI 1vjvA 271 :FMR Number of specific fragments extracted= 3 number of extra gaps= 2 total=97410 # 1m1nA.351.399 read from T0547.t06.many.frag # found chain 1m1nA in training set Warning: unaligning (T0547)K353 (1m1nA)D403 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1m1nA)T405 because P (beta_P) conformation "forbidden" or filtered. T0547 351 :LK 1m1nA 401 :YD T0547 354 :Q 1m1nA 404 :V T0547 356 :PKLI 1m1nA 406 :GYEF Number of specific fragments extracted= 3 number of extra gaps= 2 total=97413 # 1wj9A.351.7 read from T0547.t06.many.frag # found chain 1wj9A in template set T0547 351 :LKKQNPKLI 1wj9A 8 :LNPASRAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97414 # 1rloA.351.114 read from T0547.t06.many.frag # found chain 1rloA in template set T0547 351 :LKKQNPKLI 1rloA 115 :SENAPEAFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=97415 # 1wpoA.351.85 read from T0547.t06.many.frag # found chain 1wpoA in template set Warning: unaligning (T0547)N355 (1wpoA)S90 because P (beta_P) conformation "forbidden" or filtered. T0547 351 :LKKQ 1wpoA 86 :GCVT T0547 356 :PKLI 1wpoA 91 :PRFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=97417 # 1ll2A.351.39 read from T0547.t06.many.frag # found chain 1ll2A in template set T0547 351 :LKKQNPKLI 1ll2A 40 :TPQVSDTMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97418 # 1wgzA.351.259 read from T0547.t06.many.frag # found chain 1wgzA in template set Warning: unaligning (T0547)L351 (1wgzA)T260 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1wgzA)D265 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K357 (1wgzA)F266 because D (zeta) conformation "forbidden" or filtered. T0547 352 :KKQN 1wgzA 261 :RYYE T0547 358 :LI 1wgzA 267 :FN Number of specific fragments extracted= 2 number of extra gaps= 2 total=97420 # 1whsA.351.150 read from T0547.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0547)L351 (1whsA)G144 because Y (epsilon') conformation "forbidden" or filtered. T0547 352 :KKQNPKLI 1whsA 145 :ESYAGHYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=97421 # 1q9uA.351.56 read from T0547.t06.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)K352 (1q9uA)E55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1q9uA)N58 Warning: unaligning (T0547)N355 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q9uA)N58 T0547 351 :L 1q9uA 54 :L T0547 356 :PKLI 1q9uA 59 :PQEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=97423 # 1izcA.351.251 read from T0547.t06.many.frag # found chain 1izcA in training set Warning: unaligning (T0547)L351 (1izcA)G252 because Y (epsilon') conformation "forbidden" or filtered. T0547 352 :KKQNPKLI 1izcA 253 :GALSVDMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=97424 # 1wwhA.351.63 read from T0547.t06.many.frag # found chain 1wwhA in template set T0547 351 :LKKQNPKLI 1wwhA 212 :IRYQSKLQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97425 # 1l7dA.351.199 read from T0547.t06.many.frag # found chain 1l7dA in template set T0547 351 :LKKQNPKLI 1l7dA 200 :ATDVRAATK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97426 # 1oltA.351.424 read from T0547.t06.many.frag # found chain 1oltA in template set T0547 351 :LKKQNPKLI 1oltA 425 :VTAKGRLLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97427 # 2a14A.352.83 read from T0547.t06.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)K353 (2a14A)D85 because E (beta_S) conformation "forbidden" or filtered. T0547 352 :K 2a14A 84 :S T0547 354 :QNPKLID 2a14A 86 :FTDRNRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97429 # 1h70A.352.215 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 352 :KKQNPKLID 1h70A 215 :PAGYPRTRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97430 # 2jdxA.352.334 read from T0547.t06.many.frag # found chain 2jdxA in template set T0547 352 :KKQNPKLID 2jdxA 373 :DANEVPIQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97431 # 1w9zA.352.200 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)Q354 (1w9zA)T203 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1w9zA)C205 because Y (epsilon') conformation "forbidden" or filtered. T0547 352 :KK 1w9zA 201 :AE T0547 355 :N 1w9zA 204 :S T0547 357 :KLID 1w9zA 206 :ASLT Number of specific fragments extracted= 3 number of extra gaps= 2 total=97434 # 1g61A.352.210 read from T0547.t06.many.frag # found chain 1g61A in training set T0547 352 :KKQNPKLID 1g61A 2211 :GDTTGPELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97435 # 1efyA.352.201 read from T0547.t06.many.frag # found chain 1efyA in template set T0547 352 :KKQNPKLID 1efyA 863 :GSRTTNFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=97436 # 1kjqA.352.235 read from T0547.t06.many.frag # found chain 1kjqA in training set Warning: unaligning (T0547)Q354 (1kjqA)M239 because E (beta_S) conformation "forbidden" or filtered. T0547 352 :KK 1kjqA 237 :QQ T0547 355 :NPKLID 1kjqA 240 :SPLALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97438 # 1gxuA.352.50 read from T0547.t06.many.frag # found chain 1gxuA in training set Warning: unaligning (T0547)N355 (1gxuA)P54 because G (3-10) conformation "forbidden" or filtered. T0547 352 :KKQ 1gxuA 51 :RED T0547 356 :P 1gxuA 55 :E T0547 358 :LID 1gxuA 57 :FLV Number of specific fragments extracted= 3 number of extra gaps= 1 total=97441 # 1nuyA.352.212 read from T0547.t06.many.frag # found chain 1nuyA in training set Warning: unaligning (T0547)K352 (1nuyA)E1213 because G (3-10) conformation "forbidden" or filtered. T0547 353 :KQNPKLID 1nuyA 1214 :GYAKEFDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=97442 # 1rloA.352.115 read from T0547.t06.many.frag # found chain 1rloA in template set Warning: unaligning (T0547)N355 (1rloA)P119 because P (beta_P) conformation "forbidden" or filtered. T0547 352 :KKQ 1rloA 116 :ENA T0547 356 :PKLID 1rloA 120 :EAFVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=97444 # 1wqgA.352.67 read from T0547.t06.many.frag # found chain 1wqgA in template set T0547 352 :KKQNPKLID 1wqgA 68 :KPYEANQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97445 # 2czlA.352.122 read from T0547.t06.many.frag # found chain 2czlA in training set Warning: unaligning (T0547)K353 (2czlA)V124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (2czlA)D127 because G (3-10) conformation "forbidden" or filtered. T0547 352 :K 2czlA 123 :E T0547 354 :QN 2czlA 125 :RY T0547 357 :KLID 2czlA 128 :RILP Number of specific fragments extracted= 3 number of extra gaps= 2 total=97448 # 1knwA.352.299 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K353 (1knwA)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 352 :K 1knwA 300 :A T0547 354 :QNPKLID 1knwA 302 :FNDLMRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=97450 # 1vjvA.352.181 read from T0547.t06.many.frag # found chain 1vjvA in training set Warning: unaligning (T0547)K352 (1vjvA)S266 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1vjvA)N270 because G (3-10) conformation "forbidden" or filtered. T0547 353 :KQN 1vjvA 267 :GTT T0547 357 :KLID 1vjvA 271 :FMRN Number of specific fragments extracted= 2 number of extra gaps= 2 total=97452 # 1g8mA.352.344 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)K353 (1g8mA)G346 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1g8mA)E348 because P (beta_P) conformation "forbidden" or filtered. T0547 352 :K 1g8mA 345 :P T0547 354 :Q 1g8mA 347 :Y T0547 356 :PKLID 1g8mA 349 :EEALK Number of specific fragments extracted= 3 number of extra gaps= 2 total=97455 # 1wvqA.352.63 read from T0547.t06.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)K353 (1wvqA)A65 because Y (epsilon') conformation "forbidden" or filtered. T0547 352 :K 1wvqA 64 :E T0547 354 :QNPKLID 1wvqA 66 :NDEELRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=97457 # 1e2kA.352.284 read from T0547.t06.many.frag # found chain 1e2kA in training set Warning: unaligning (T0547)K353 (1e2kA)Q331 because Y (epsilon') conformation "forbidden" or filtered. T0547 352 :K 1e2kA 330 :D T0547 354 :QNPKLID 1e2kA 332 :SPAGCRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=97459 # 1hqsA.352.282 read from T0547.t06.many.frag # found chain 1hqsA in training set Warning: unaligning (T0547)Q354 (1hqsA)I285 because P (beta_P) conformation "forbidden" or filtered. T0547 352 :KK 1hqsA 283 :DS T0547 355 :NPKLID 1hqsA 286 :ADIFLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=97461 # 1nmoA.352.171 read from T0547.t06.many.frag # found chain 1nmoA in template set Warning: unaligning (T0547)K352 (1nmoA)T172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1nmoA)G175 because G (3-10) conformation "forbidden" or filtered. T0547 353 :KQ 1nmoA 173 :GG T0547 356 :PKLID 1nmoA 176 :QSFID Number of specific fragments extracted= 2 number of extra gaps= 2 total=97463 # 1wdaA.352.376 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)N355 (1wdaA)N373 because L (left) conformation "forbidden" or filtered. T0547 352 :KKQ 1wdaA 370 :SPR T0547 356 :PKLID 1wdaA 374 :RGLKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97465 # 1s9rA.352.363 read from T0547.t06.many.frag # found chain 1s9rA in training set T0547 352 :KKQNPKLID 1s9rA 364 :YSRNEKTNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97466 # 1k87A.352.484 read from T0547.t06.many.frag # found chain 1k87A in template set Warning: unaligning (T0547)K353 (1k87A)T486 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1k87A)N488 because P (beta_P) conformation "forbidden" or filtered. T0547 352 :K 1k87A 485 :A T0547 354 :Q 1k87A 487 :H T0547 356 :PKLID 1k87A 489 :AHTLA Number of specific fragments extracted= 3 number of extra gaps= 2 total=97469 # 1q2lA.352.455 read from T0547.t06.many.frag # found chain 1q2lA in template set Warning: unaligning (T0547)N355 (1q2lA)S482 because P (beta_P) conformation "forbidden" or filtered. T0547 352 :KKQ 1q2lA 479 :DKI T0547 356 :PKLID 1q2lA 483 :AQTFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=97471 # 1ll2A.352.40 read from T0547.t06.many.frag # found chain 1ll2A in template set T0547 352 :KKQNPKLID 1ll2A 41 :PQVSDTMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97472 # 2f06A.352.117 read from T0547.t06.many.frag # found chain 2f06A in template set T0547 352 :KKQNPKLID 2f06A 115 :PSNMDKCIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97473 # 1wpoA.352.86 read from T0547.t06.many.frag # found chain 1wpoA in template set T0547 352 :KKQNPKLID 1wpoA 87 :CVTSPRFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97474 # 1pii.352.334 read from T0547.t06.many.frag # found chain 1pii in template set T0547 352 :KKQNPKLID 1pii 335 :GNEEQLYID Number of specific fragments extracted= 1 number of extra gaps= 0 total=97475 # 1xdpA.352.537 read from T0547.t06.many.frag # found chain 1xdpA in template set T0547 352 :KKQNPKLID 1xdpA 539 :NLVDKGLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=97476 # 1ye8A.352.161 read from T0547.t06.many.frag # found chain 1ye8A in training set Warning: unaligning (T0547)P356 (1ye8A)D166 because G (3-10) conformation "forbidden" or filtered. T0547 352 :KKQN 1ye8A 162 :PENR T0547 357 :KLID 1ye8A 167 :VILE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97478 # 1dekA.352.174 read from T0547.t06.many.frag # found chain 1dekA in template set T0547 352 :KKQNPKLID 1dekA 175 :DTRQDHEMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=97479 # 1w9zA.353.201 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)P356 (1w9zA)C205 because Y (epsilon') conformation "forbidden" or filtered. T0547 353 :KQN 1w9zA 202 :ETS T0547 357 :KLIDE 1w9zA 206 :ASLTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=97481 # 1knwA.353.300 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K353 (1knwA)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 354 :QNPKLIDE 1knwA 302 :FNDLMRPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=97482 # 2a14A.353.84 read from T0547.t06.many.frag # found chain 2a14A in training set T0547 353 :KQNPKLIDE 2a14A 85 :DFTDRNREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97483 # 1h70A.353.216 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 353 :KQNPKLIDE 1h70A 216 :AGYPRTREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97484 # 1nuyA.353.213 read from T0547.t06.many.frag # found chain 1nuyA in training set T0547 353 :KQNPKLIDE 1nuyA 1214 :GYAKEFDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97485 # 1rloA.353.116 read from T0547.t06.many.frag # found chain 1rloA in template set Warning: unaligning (T0547)N355 (1rloA)P119 because P (beta_P) conformation "forbidden" or filtered. T0547 353 :KQ 1rloA 117 :NA T0547 356 :PKLIDE 1rloA 120 :EAFVAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=97487 # 1g61A.353.211 read from T0547.t06.many.frag # found chain 1g61A in training set Warning: unaligning (T0547)Q354 (1g61A)T2213 because P (beta_P) conformation "forbidden" or filtered. T0547 353 :K 1g61A 2212 :D T0547 355 :NPKLIDE 1g61A 2214 :TGPELLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=97489 # 1kjqA.353.236 read from T0547.t06.many.frag # found chain 1kjqA in training set T0547 353 :KQNPKLIDE 1kjqA 238 :QMSPLALER Number of specific fragments extracted= 1 number of extra gaps= 0 total=97490 # 1pii.353.335 read from T0547.t06.many.frag # found chain 1pii in template set T0547 353 :KQNPKLIDE 1pii 336 :NEEQLYIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=97491 # 1wqgA.353.68 read from T0547.t06.many.frag # found chain 1wqgA in template set T0547 353 :KQNPKLIDE 1wqgA 69 :PYEANQLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97492 # 2jdxA.353.335 read from T0547.t06.many.frag # found chain 2jdxA in template set T0547 353 :KQNPKLIDE 2jdxA 374 :ANEVPIQKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=97493 # 1g8mA.353.345 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)K353 (1g8mA)G346 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1g8mA)E348 because P (beta_P) conformation "forbidden" or filtered. T0547 354 :Q 1g8mA 347 :Y T0547 356 :PKLIDE 1g8mA 349 :EEALKI Number of specific fragments extracted= 2 number of extra gaps= 2 total=97495 # 1nmoA.353.172 read from T0547.t06.many.frag # found chain 1nmoA in template set T0547 353 :KQNPKLIDE 1nmoA 173 :GGGQSFIDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97496 # 1efyA.353.202 read from T0547.t06.many.frag # found chain 1efyA in template set Warning: unaligning (T0547)K353 (1efyA)S864 because Y (epsilon') conformation "forbidden" or filtered. T0547 354 :QNPKLIDE 1efyA 865 :RTTNFAGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=97497 # 1gxuA.353.51 read from T0547.t06.many.frag # found chain 1gxuA in training set Warning: unaligning (T0547)K353 (1gxuA)E52 because P (beta_P) conformation "forbidden" or filtered. T0547 354 :QNP 1gxuA 53 :DPE T0547 358 :LIDE 1gxuA 57 :FLVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=97499 # 1ll2A.353.41 read from T0547.t06.many.frag # found chain 1ll2A in template set Warning: unaligning (T0547)Q354 (1ll2A)V43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N355 (1ll2A)S44 because P (beta_P) conformation "forbidden" or filtered. T0547 353 :K 1ll2A 42 :Q T0547 356 :PKLIDE 1ll2A 45 :DTMRKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=97501 # 1e2kA.353.285 read from T0547.t06.many.frag # found chain 1e2kA in training set T0547 353 :KQNPKLIDE 1e2kA 331 :QSPAGCRDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97502 # 2czlA.353.123 read from T0547.t06.many.frag # found chain 2czlA in training set Warning: unaligning (T0547)K353 (2czlA)V124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (2czlA)D127 because G (3-10) conformation "forbidden" or filtered. T0547 354 :QN 2czlA 125 :RY T0547 357 :KLIDE 2czlA 128 :RILPM Number of specific fragments extracted= 2 number of extra gaps= 2 total=97504 # 1wvqA.353.64 read from T0547.t06.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)K353 (1wvqA)A65 because Y (epsilon') conformation "forbidden" or filtered. T0547 354 :QNPKLIDE 1wvqA 66 :NDEELRNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=97505 # 1wdaA.353.377 read from T0547.t06.many.frag # found chain 1wdaA in template set T0547 353 :KQNPKLIDE 1wdaA 371 :PRNRGLKEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=97506 # 1m55A.353.20 read from T0547.t06.many.frag # found chain 1m55A in training set T0547 353 :KQNPKLIDE 1m55A 21 :GISDSFVDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=97507 # 1ye8A.353.162 read from T0547.t06.many.frag # found chain 1ye8A in training set Warning: unaligning (T0547)P356 (1ye8A)D166 because G (3-10) conformation "forbidden" or filtered. T0547 353 :KQN 1ye8A 163 :ENR T0547 357 :KLIDE 1ye8A 167 :VILED Number of specific fragments extracted= 2 number of extra gaps= 1 total=97509 # 1dekA.353.175 read from T0547.t06.many.frag # found chain 1dekA in template set T0547 353 :KQNPKLIDE 1dekA 176 :TRQDHEMDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97510 # 1jbwA.353.345 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 353 :KQNPKLIDE 1jbwA 346 :KDYAAMADR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97511 # 1iv3A.353.102 read from T0547.t06.many.frag # found chain 1iv3A in training set Warning: unaligning (T0547)K353 (1iv3A)P103 because C (cis) conformation "forbidden" or filtered. T0547 354 :QNPKLIDE 1iv3A 104 :KLGPHRKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=97512 # 1wpoA.353.87 read from T0547.t06.many.frag # found chain 1wpoA in template set T0547 353 :KQNPKLIDE 1wpoA 88 :VTSPRFLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97513 # 1ijbA.353.156 read from T0547.t06.many.frag # found chain 1ijbA in training set T0547 353 :KQNPKLIDE 1ijbA 656 :HANLKQIRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97514 # 1hqsA.353.283 read from T0547.t06.many.frag # found chain 1hqsA in training set T0547 353 :KQNPKLIDE 1hqsA 284 :SIADIFLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=97515 # 2f06A.353.118 read from T0547.t06.many.frag # found chain 2f06A in template set T0547 353 :KQNPKLIDE 2f06A 116 :SNMDKCIEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=97516 # 1vjvA.353.182 read from T0547.t06.many.frag # found chain 1vjvA in training set Warning: unaligning (T0547)P356 (1vjvA)N270 because G (3-10) conformation "forbidden" or filtered. T0547 353 :KQN 1vjvA 267 :GTT T0547 357 :KLIDE 1vjvA 271 :FMRNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=97518 # 1w9zA.354.202 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)P356 (1w9zA)C205 because Y (epsilon') conformation "forbidden" or filtered. T0547 354 :QN 1w9zA 203 :TS T0547 357 :KLIDEL 1w9zA 206 :ASLTAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=97520 # 1knwA.354.301 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 354 :QNPKLIDEL 1knwA 302 :FNDLMRPAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=97521 # 1rloA.354.117 read from T0547.t06.many.frag # found chain 1rloA in template set T0547 354 :QNPKLIDEL 1rloA 118 :APEAFVALM Number of specific fragments extracted= 1 number of extra gaps= 0 total=97522 # 1h70A.354.217 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 354 :QNPKLIDEL 1h70A 217 :GYPRTREKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97523 # 1pii.354.336 read from T0547.t06.many.frag # found chain 1pii in template set T0547 354 :QNPKLIDEL 1pii 337 :EEQLYIDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97524 # 1nmoA.354.173 read from T0547.t06.many.frag # found chain 1nmoA in template set T0547 354 :QNPKLIDEL 1nmoA 174 :GGQSFIDSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97525 # 1kjqA.354.237 read from T0547.t06.many.frag # found chain 1kjqA in training set T0547 354 :QNPKLIDEL 1kjqA 239 :MSPLALERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97526 # 1nuyA.354.214 read from T0547.t06.many.frag # found chain 1nuyA in training set T0547 354 :QNPKLIDEL 1nuyA 1215 :YAKEFDPAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97527 # 1ll2A.354.42 read from T0547.t06.many.frag # found chain 1ll2A in template set Warning: unaligning (T0547)Q354 (1ll2A)V43 because P (beta_P) conformation "forbidden" or filtered. T0547 355 :NPKLIDEL 1ll2A 44 :SDTMRKAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=97528 # 1na6A.354.139 read from T0547.t06.many.frag # found chain 1na6A in template set Warning: unaligning (T0547)N355 (1na6A)S141 because Y (epsilon') conformation "forbidden" or filtered. T0547 354 :Q 1na6A 140 :A T0547 356 :PKLIDEL 1na6A 142 :TDEEDVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=97530 # 1iv3A.354.103 read from T0547.t06.many.frag # found chain 1iv3A in training set T0547 354 :QNPKLIDEL 1iv3A 104 :KLGPHRKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97531 # 2jdxA.354.283 read from T0547.t06.many.frag # found chain 2jdxA in template set T0547 354 :QNPKLIDEL 2jdxA 322 :RPCHQIDLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=97532 # 1ijbA.354.157 read from T0547.t06.many.frag # found chain 1ijbA in training set T0547 354 :QNPKLIDEL 1ijbA 657 :ANLKQIRLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97533 # 2a14A.354.85 read from T0547.t06.many.frag # found chain 2a14A in training set T0547 354 :QNPKLIDEL 2a14A 86 :FTDRNREEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97534 # 1ye8A.354.163 read from T0547.t06.many.frag # found chain 1ye8A in training set Warning: unaligning (T0547)P356 (1ye8A)D166 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K357 (1ye8A)V167 because G (3-10) conformation "forbidden" or filtered. T0547 354 :QN 1ye8A 164 :NR T0547 358 :LIDEL 1ye8A 168 :ILEDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=97536 # 1gxuA.354.52 read from T0547.t06.many.frag # found chain 1gxuA in training set T0547 354 :QNP 1gxuA 53 :DPE T0547 358 :LIDEL 1gxuA 57 :FLVQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=97538 # 1g61A.354.212 read from T0547.t06.many.frag # found chain 1g61A in training set T0547 354 :QNPKLIDEL 1g61A 2213 :TTGPELLII Number of specific fragments extracted= 1 number of extra gaps= 0 total=97539 # 1wqgA.354.69 read from T0547.t06.many.frag # found chain 1wqgA in template set Warning: unaligning (T0547)N355 (1wqgA)E71 because E (beta_S) conformation "forbidden" or filtered. T0547 354 :Q 1wqgA 70 :Y T0547 356 :PKLIDEL 1wqgA 72 :ANQLRAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=97541 # 1e2kA.354.286 read from T0547.t06.many.frag # found chain 1e2kA in training set T0547 354 :QNPKLIDEL 1e2kA 332 :SPAGCRDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97542 # 1wdaA.354.378 read from T0547.t06.many.frag # found chain 1wdaA in template set T0547 354 :QNPKLIDEL 1wdaA 372 :RNRGLKEFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97543 # 1jbwA.354.346 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 354 :QNPKLIDEL 1jbwA 347 :DYAAMADRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97544 # 2jdxA.354.336 read from T0547.t06.many.frag # found chain 2jdxA in template set T0547 354 :QNPKLIDEL 2jdxA 375 :NEVPIQKMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=97545 # 1wvqA.354.65 read from T0547.t06.many.frag # found chain 1wvqA in training set T0547 354 :QNPKLIDEL 1wvqA 66 :NDEELRNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97546 # 1wpoA.354.88 read from T0547.t06.many.frag # found chain 1wpoA in template set T0547 354 :QNPKLIDEL 1wpoA 89 :TSPRFLEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=97547 # 1izcA.354.254 read from T0547.t06.many.frag # found chain 1izcA in training set T0547 354 :QNPKLIDEL 1izcA 255 :LSVDMVPSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97548 # 1xdpA.354.539 read from T0547.t06.many.frag # found chain 1xdpA in template set Warning: unaligning (T0547)N355 (1xdpA)D542 because P (beta_P) conformation "forbidden" or filtered. T0547 354 :Q 1xdpA 541 :V T0547 356 :PKLIDEL 1xdpA 543 :KGLVDRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=97550 # 1k87A.354.486 read from T0547.t06.many.frag # found chain 1k87A in template set Warning: unaligning (T0547)N355 (1k87A)N488 because P (beta_P) conformation "forbidden" or filtered. T0547 354 :Q 1k87A 487 :H T0547 356 :PKLIDEL 1k87A 489 :AHTLAAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=97552 # 1h72C.354.268 read from T0547.t06.many.frag # found chain 1h72C in training set T0547 354 :QNPKLIDEL 1h72C 273 :FIDEVENIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97553 # 2f06A.354.119 read from T0547.t06.many.frag # found chain 2f06A in template set T0547 354 :QNPKLIDEL 2f06A 117 :NMDKCIEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97554 # 1efyA.354.203 read from T0547.t06.many.frag # found chain 1efyA in template set T0547 354 :QNPKLIDEL 1efyA 865 :RTTNFAGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97555 # 1w9zA.355.203 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)N355 (1w9zA)S204 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P356 (1w9zA)C205 because Y (epsilon') conformation "forbidden" or filtered. T0547 357 :KLIDELY 1w9zA 206 :ASLTAMT Number of specific fragments extracted= 1 number of extra gaps= 1 total=97556 # 1rloA.355.118 read from T0547.t06.many.frag # found chain 1rloA in template set T0547 355 :NPKLIDELY 1rloA 119 :PEAFVALMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97557 # 1pii.355.337 read from T0547.t06.many.frag # found chain 1pii in template set T0547 355 :NPKLIDELY 1pii 338 :EQLYIDTLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97558 # 1knwA.355.302 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 355 :NPKLIDELY 1knwA 303 :NDLMRPAMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=97559 # 1h70A.355.218 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 355 :NPKLIDELY 1h70A 218 :YPRTREKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97560 # 1nuyA.355.215 read from T0547.t06.many.frag # found chain 1nuyA in training set T0547 355 :NPKLIDELY 1nuyA 1216 :AKEFDPAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=97561 # 1na6A.355.140 read from T0547.t06.many.frag # found chain 1na6A in template set Warning: unaligning (T0547)N355 (1na6A)S141 because Y (epsilon') conformation "forbidden" or filtered. T0547 356 :PKLIDELY 1na6A 142 :TDEEDVIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=97562 # 1nmoA.355.174 read from T0547.t06.many.frag # found chain 1nmoA in template set T0547 355 :NPKLIDELY 1nmoA 175 :GQSFIDSAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97563 # 1ll2A.355.43 read from T0547.t06.many.frag # found chain 1ll2A in template set Warning: unaligning (T0547)N355 (1ll2A)S44 because P (beta_P) conformation "forbidden" or filtered. T0547 356 :PKLIDELY 1ll2A 45 :DTMRKALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=97564 # 2jdxA.355.284 read from T0547.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0547)N355 (2jdxA)P323 because P (beta_P) conformation "forbidden" or filtered. T0547 356 :PKLIDELY 2jdxA 324 :CHQIDLFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=97565 # 1wpoA.355.89 read from T0547.t06.many.frag # found chain 1wpoA in template set T0547 355 :NPKLIDELY 1wpoA 90 :SPRFLEIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97566 1ee4A expands to /projects/compbio/data/pdb/1ee4.pdb.gz 1ee4A:# 1ee4A.355.168 read from T0547.t06.many.frag # adding 1ee4A to template set # found chain 1ee4A in template set T0547 355 :NPKLIDELY 1ee4A 255 :VSQALPTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97567 # 1kjqA.355.238 read from T0547.t06.many.frag # found chain 1kjqA in training set T0547 355 :NPKLIDELY 1kjqA 240 :SPLALERAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=97568 # 1e2kA.355.287 read from T0547.t06.many.frag # found chain 1e2kA in training set T0547 355 :NPKLIDELY 1e2kA 333 :PAGCRDALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97569 # 1iv3A.355.104 read from T0547.t06.many.frag # found chain 1iv3A in training set T0547 355 :NPKLIDELY 1iv3A 105 :LGPHRKALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=97570 # 1h72C.355.269 read from T0547.t06.many.frag # found chain 1h72C in training set T0547 355 :NPKLIDELY 1h72C 274 :IDEVENILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97571 # 1jbwA.355.347 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 355 :NPKLIDELY 1jbwA 348 :YAAMADRLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=97572 # 1u5hA.355.209 read from T0547.t06.many.frag # found chain 1u5hA in template set T0547 355 :NPKLIDELY 1u5hA 210 :HPSQIPVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97573 # 1dvoA.355.64 read from T0547.t06.many.frag # found chain 1dvoA in template set Warning: unaligning (T0547)K357 (1dvoA)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 355 :NP 1dvoA 97 :AC T0547 358 :LIDELY 1dvoA 100 :IRDVLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=97575 # 1ye8A.355.164 read from T0547.t06.many.frag # found chain 1ye8A in training set Warning: unaligning (T0547)P356 (1ye8A)D166 because G (3-10) conformation "forbidden" or filtered. T0547 355 :N 1ye8A 165 :R T0547 357 :KLIDELY 1ye8A 167 :VILEDIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=97577 # 1yj7A.355.46 read from T0547.t06.many.frag # found chain 1yj7A in training set T0547 355 :NPKLIDELY 1yj7A 66 :FVRAITILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97578 # 1l1lA.355.579 read from T0547.t06.many.frag # found chain 1l1lA in training set T0547 355 :NPKLIDELY 1l1lA 580 :SDPLLPALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97579 # 1iu8A.355.113 read from T0547.t06.many.frag # found chain 1iu8A in training set T0547 355 :NPKLIDELY 1iu8A 114 :TREIVEEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97580 # 1rp4A.355.260 read from T0547.t06.many.frag # found chain 1rp4A in template set T0547 355 :NPKLIDELY 1rp4A 299 :NKEIKNKMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=97581 # 1vb3A.355.335 read from T0547.t06.many.frag # found chain 1vb3A in template set T0547 355 :NPKLIDELY 1vb3A 336 :TQQTMRELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97582 # 1llfA.355.369 read from T0547.t06.many.frag # found chain 1llfA in training set T0547 355 :NPKLIDELY 1llfA 370 :SDAEIDTLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=97583 # 1gxuA.355.53 read from T0547.t06.many.frag # found chain 1gxuA in training set T0547 355 :NP 1gxuA 54 :PE T0547 358 :LIDELY 1gxuA 57 :FLVQLY Number of specific fragments extracted= 2 number of extra gaps= 0 total=97585 2a25A expands to /projects/compbio/data/pdb/2a25.pdb.gz 2a25A:# 2a25A.355.51 read from T0547.t06.many.frag # adding 2a25A to template set # found chain 2a25A in template set T0547 355 :NPKLIDELY 2a25A 141 :LDAVMPHLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=97586 # 1ijbA.355.158 read from T0547.t06.many.frag # found chain 1ijbA in training set T0547 355 :NPKLIDELY 1ijbA 658 :NLKQIRLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97587 # 1m55A.355.22 read from T0547.t06.many.frag # found chain 1m55A in training set Warning: unaligning (T0547)N355 (1m55A)S23 because P (beta_P) conformation "forbidden" or filtered. T0547 356 :PKLIDELY 1m55A 24 :DSFVDWVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=97588 # 1w9zA.356.204 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)P356 (1w9zA)C205 because Y (epsilon') conformation "forbidden" or filtered. T0547 357 :KLIDELYD 1w9zA 206 :ASLTAMTN Number of specific fragments extracted= 1 number of extra gaps= 1 total=97589 # 1na6A.356.141 read from T0547.t06.many.frag # found chain 1na6A in template set T0547 356 :PKLIDELYD 1na6A 142 :TDEEDVIET Number of specific fragments extracted= 1 number of extra gaps= 0 total=97590 # 1rloA.356.119 read from T0547.t06.many.frag # found chain 1rloA in template set T0547 356 :PKLIDELYD 1rloA 120 :EAFVALMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97591 # 1u5hA.356.210 read from T0547.t06.many.frag # found chain 1u5hA in template set T0547 356 :PKLIDELYD 1u5hA 211 :PSQIPVVRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97592 # 1pii.356.338 read from T0547.t06.many.frag # found chain 1pii in template set T0547 356 :PKLIDELYD 1pii 339 :QLYIDTLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97593 # 1yj7A.356.47 read from T0547.t06.many.frag # found chain 1yj7A in training set T0547 356 :PKLIDELYD 1yj7A 67 :VRAITILNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97594 # 2jdxA.356.285 read from T0547.t06.many.frag # found chain 2jdxA in template set T0547 356 :PKLIDELYD 2jdxA 324 :CHQIDLFKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97595 # 1h70A.356.219 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 356 :PKLIDELYD 1h70A 219 :PRTREKIAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97596 # 1e2kA.356.288 read from T0547.t06.many.frag # found chain 1e2kA in training set T0547 356 :PKLIDELYD 1e2kA 334 :AGCRDALLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=97597 # 1khxA.356.78 read from T0547.t06.many.frag # found chain 1khxA in training set T0547 356 :PKLIDELYD 1khxA 319 :VNRNATVEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=97598 # 1jbwA.356.348 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 356 :PKLIDELYD 1jbwA 349 :AAMADRLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97599 # 1h72C.356.270 read from T0547.t06.many.frag # found chain 1h72C in training set T0547 356 :PKLIDELYD 1h72C 275 :DEVENILRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=97600 # 1nmoA.356.175 read from T0547.t06.many.frag # found chain 1nmoA in template set T0547 356 :PKLIDELYD 1nmoA 176 :QSFIDSAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97601 # 1ee4A.356.169 read from T0547.t06.many.frag # found chain 1ee4A in template set T0547 356 :PKLIDELYD 1ee4A 256 :SQALPTLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97602 # 1wpoA.356.90 read from T0547.t06.many.frag # found chain 1wpoA in template set T0547 356 :PKLIDELYD 1wpoA 91 :PRFLEIVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97603 # 1ijbA.356.159 read from T0547.t06.many.frag # found chain 1ijbA in training set T0547 356 :PKLIDELYD 1ijbA 659 :LKQIRLIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97604 # 1vb3A.356.336 read from T0547.t06.many.frag # found chain 1vb3A in template set T0547 356 :PKLIDELYD 1vb3A 337 :QQTMRELKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97605 # 1iv3A.356.105 read from T0547.t06.many.frag # found chain 1iv3A in training set T0547 356 :PKLIDELYD 1iv3A 106 :GPHRKALVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=97606 # 2apjA.356.203 read from T0547.t06.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)P356 (2apjA)G204 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K357 (2apjA)G205 because S (epsilon) conformation "forbidden" or filtered. T0547 358 :LIDELYD 2apjA 206 :YIDKVRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=97607 # 1llfA.356.370 read from T0547.t06.many.frag # found chain 1llfA in training set T0547 356 :PKLIDELYD 1llfA 371 :DAEIDTLMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97608 # 1m40A.356.175 read from T0547.t06.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)P356 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0547)K357 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0547 358 :LIDELYD 1m40A 203 :SRQQLID Number of specific fragments extracted= 1 number of extra gaps= 1 total=97609 # 1rp4A.356.261 read from T0547.t06.many.frag # found chain 1rp4A in template set T0547 356 :PKLIDELYD 1rp4A 300 :KEIKNKMDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97610 # 1dvoA.356.65 read from T0547.t06.many.frag # found chain 1dvoA in template set Warning: unaligning (T0547)K357 (1dvoA)G99 because T (delta_L) conformation "forbidden" or filtered. T0547 356 :P 1dvoA 98 :C T0547 358 :LIDELYD 1dvoA 100 :IRDVLLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97612 # 1f74A.356.169 read from T0547.t06.many.frag # found chain 1f74A in training set T0547 356 :PKLIDELYD 1f74A 170 :FYLLERLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97613 # 1l1lA.356.580 read from T0547.t06.many.frag # found chain 1l1lA in training set T0547 356 :PKLIDELYD 1l1lA 581 :DPLLPALKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97614 # 1knwA.356.303 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Y363 (1knwA)Y311 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D364 (1knwA)G312 because T (delta_L) conformation "forbidden" or filtered. T0547 356 :PKLIDEL 1knwA 304 :DLMRPAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=97615 1vfjA expands to /projects/compbio/data/pdb/1vfj.pdb.gz 1vfjA:# 1vfjA.356.13 read from T0547.t06.many.frag # adding 1vfjA to template set # found chain 1vfjA in template set T0547 356 :PKLIDELYD 1vfjA 14 :NEVLKALFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=97616 # 1iu8A.356.114 read from T0547.t06.many.frag # found chain 1iu8A in training set T0547 356 :PKLIDELYD 1iu8A 115 :REIVEEMKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97617 # 2a25A.356.52 read from T0547.t06.many.frag # found chain 2a25A in template set T0547 356 :PKLIDELYD 2a25A 142 :DAVMPHLMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=97618 # 1ll2A.356.44 read from T0547.t06.many.frag # found chain 1ll2A in template set T0547 356 :PKLIDELYD 1ll2A 45 :DTMRKALEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97619 # 1w9zA.357.205 read from T0547.t06.many.frag # found chain 1w9zA in template set T0547 357 :KLIDELYDL 1w9zA 206 :ASLTAMTNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97620 # 1na6A.357.142 read from T0547.t06.many.frag # found chain 1na6A in template set T0547 357 :KLIDELYDL 1na6A 143 :DEEDVIETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97621 # 1rloA.357.120 read from T0547.t06.many.frag # found chain 1rloA in template set T0547 357 :KLIDELYDL 1rloA 121 :AFVALMAKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=97622 # 1yj7A.357.48 read from T0547.t06.many.frag # found chain 1yj7A in training set T0547 357 :KLIDELYDL 1yj7A 68 :RAITILNNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97623 # 1u5hA.357.211 read from T0547.t06.many.frag # found chain 1u5hA in template set T0547 357 :KLIDELYDL 1u5hA 212 :SQIPVVRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97624 # 1pii.357.339 read from T0547.t06.many.frag # found chain 1pii in template set T0547 357 :KLIDELYDL 1pii 340 :LYIDTLREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97625 # 1jbwA.357.349 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 357 :KLIDELYDL 1jbwA 350 :AMADRLTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97626 # 1ee4A.357.170 read from T0547.t06.many.frag # found chain 1ee4A in template set T0547 357 :KLIDELYDL 1ee4A 257 :QALPTLAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97627 # 1h72C.357.271 read from T0547.t06.many.frag # found chain 1h72C in training set T0547 357 :KLIDELYDL 1h72C 276 :EVENILRDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=97628 # 1vfjA.357.14 read from T0547.t06.many.frag # found chain 1vfjA in template set T0547 357 :KLIDELYDL 1vfjA 15 :EVLKALFQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97629 # 1m7gA.357.110 read from T0547.t06.many.frag # found chain 1m7gA in training set T0547 357 :KLIDELYDL 1m7gA 111 :KDRDTARQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97630 # 1llfA.357.371 read from T0547.t06.many.frag # found chain 1llfA in training set T0547 357 :KLIDELYDL 1llfA 372 :AEIDTLMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97631 # 1vb3A.357.337 read from T0547.t06.many.frag # found chain 1vb3A in template set T0547 357 :KLIDELYDL 1vb3A 338 :QTMRELKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97632 # 1e2kA.357.289 read from T0547.t06.many.frag # found chain 1e2kA in training set T0547 357 :KLIDELYDL 1e2kA 335 :GCRDALLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97633 # 1khxA.357.79 read from T0547.t06.many.frag # found chain 1khxA in training set T0547 357 :KLIDELYDL 1khxA 320 :NRNATVEMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=97634 # 1rp4A.357.262 read from T0547.t06.many.frag # found chain 1rp4A in template set T0547 357 :KLIDELYDL 1rp4A 301 :EIKNKMDNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=97635 # 1iv3A.357.106 read from T0547.t06.many.frag # found chain 1iv3A in training set T0547 357 :KLIDELYDL 1iv3A 107 :PHRKALVDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97636 # 1h70A.357.220 read from T0547.t06.many.frag # found chain 1h70A in training set T0547 357 :KLIDELYDL 1h70A 220 :RTREKIARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97637 # 1f74A.357.170 read from T0547.t06.many.frag # found chain 1f74A in training set T0547 357 :KLIDELYDL 1f74A 171 :YLLERLKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97638 # 1m40A.357.176 read from T0547.t06.many.frag # found chain 1m40A in training set Warning: unaligning (T0547)K357 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0547 358 :LIDELYDL 1m40A 203 :SRQQLIDW Number of specific fragments extracted= 1 number of extra gaps= 1 total=97639 # 2apjA.357.204 read from T0547.t06.many.frag # found chain 2apjA in training set Warning: unaligning (T0547)K357 (2apjA)G205 because S (epsilon) conformation "forbidden" or filtered. T0547 358 :LIDELYDL 2apjA 206 :YIDKVREA Number of specific fragments extracted= 1 number of extra gaps= 1 total=97640 # 2ex0A.357.291 read from T0547.t06.many.frag # found chain 2ex0A in training set T0547 357 :KLIDELYDL 2ex0A 316 :EINDYILNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97641 # 2a25A.357.53 read from T0547.t06.many.frag # found chain 2a25A in template set T0547 357 :KLIDELYDL 2a25A 143 :AVMPHLMHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=97642 # 2jdxA.357.286 read from T0547.t06.many.frag # found chain 2jdxA in template set T0547 357 :KLIDELYDL 2jdxA 325 :HQIDLFKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97643 # 1iu8A.357.115 read from T0547.t06.many.frag # found chain 1iu8A in training set T0547 357 :KLIDELYDL 1iu8A 116 :EIVEEMKKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97644 # 1wpoA.357.91 read from T0547.t06.many.frag # found chain 1wpoA in template set T0547 357 :KLIDELYDL 1wpoA 92 :RFLEIVRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97645 # 1l1lA.357.581 read from T0547.t06.many.frag # found chain 1l1lA in training set T0547 357 :KLIDELYDL 1l1lA 582 :PLLPALKAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=97646 # 1dvoA.357.66 read from T0547.t06.many.frag # found chain 1dvoA in template set T0547 357 :KLIDELYDL 1dvoA 99 :GIRDVLLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=97647 # 2f46A.357.145 read from T0547.t06.many.frag # found chain 2f46A in training set T0547 357 :KLIDELYDL 2f46A 145 :NFRERLDNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97648 # 1gxuA.357.55 read from T0547.t06.many.frag # found chain 1gxuA in training set T0547 358 :LIDELYDL 1gxuA 57 :FLVQLYQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=97649 # 1w9zA.358.206 read from T0547.t06.many.frag # found chain 1w9zA in template set T0547 358 :LIDELYDLY 1w9zA 207 :SLTAMTNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=97650 # 1na6A.358.143 read from T0547.t06.many.frag # found chain 1na6A in template set T0547 358 :LIDELYDLY 1na6A 144 :EEDVIETAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97651 # 1rloA.358.121 read from T0547.t06.many.frag # found chain 1rloA in template set Warning: unaligning (T0547)Y366 (1rloA)Y130 because D (zeta) conformation "forbidden" or filtered. T0547 358 :LIDELYDL 1rloA 122 :FVALMAKH Number of specific fragments extracted= 1 number of extra gaps= 1 total=97652 # 1yj7A.358.49 read from T0547.t06.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)Y366 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. T0547 358 :LIDELYDL 1yj7A 69 :AITILNNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=97653 # 1u5hA.358.212 read from T0547.t06.many.frag # found chain 1u5hA in template set T0547 358 :LIDELYDLY 1u5hA 213 :QIPVVRKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=97654 # 1m7gA.358.111 read from T0547.t06.many.frag # found chain 1m7gA in training set T0547 358 :LIDELYDLY 1m7gA 112 :DRDTARQLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=97655 # 1h72C.358.272 read from T0547.t06.many.frag # found chain 1h72C in training set T0547 358 :LIDELYDLY 1h72C 277 :VENILRDYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=97656 # 1pii.358.340 read from T0547.t06.many.frag # found chain 1pii in template set T0547 358 :LIDELYDLY 1pii 341 :YIDTLREAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97657 # 1jbwA.358.350 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 358 :LIDELYDLY 1jbwA 351 :MADRLTAAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=97658 # 1rp4A.358.263 read from T0547.t06.many.frag # found chain 1rp4A in template set T0547 358 :LIDELYDLY 1rp4A 302 :IKNKMDNVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97659 # 1vfjA.358.15 read from T0547.t06.many.frag # found chain 1vfjA in template set Warning: unaligning (T0547)Y366 (1vfjA)E24 because L (left) conformation "forbidden" or filtered. T0547 358 :LIDELYDL 1vfjA 16 :VLKALFQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=97660 # 1khxA.358.80 read from T0547.t06.many.frag # found chain 1khxA in training set T0547 358 :LIDELYDLY 1khxA 321 :RNATVEMTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97661 # 1llfA.358.372 read from T0547.t06.many.frag # found chain 1llfA in training set T0547 358 :LIDELYDLY 1llfA 373 :EIDTLMAAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=97662 # 1m40A.358.177 read from T0547.t06.many.frag # found chain 1m40A in training set T0547 358 :LIDELYDLY 1m40A 203 :SRQQLIDWM Number of specific fragments extracted= 1 number of extra gaps= 0 total=97663 # 1o9iA.358.187 read from T0547.t06.many.frag # found chain 1o9iA in training set T0547 358 :LIDELYDLY 1o9iA 188 :AQEELEEKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=97664 # 1us0A.358.284 read from T0547.t06.many.frag # found chain 1us0A in training set T0547 358 :LIDELYDLY 1us0A 284 :DMTTLLSYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97665 # 1l1lA.358.582 read from T0547.t06.many.frag # found chain 1l1lA in training set T0547 358 :LIDELYDLY 1l1lA 583 :LLPALKACG Number of specific fragments extracted= 1 number of extra gaps= 0 total=97666 # 1zhvA.358.113 read from T0547.t06.many.frag # found chain 1zhvA in training set T0547 358 :LIDELYDLY 1zhvA 115 :TADLLANAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=97667 # 1a8d.358.236 read from T0547.t06.many.frag # found chain 1a8d in training set T0547 358 :LIDELYDLY 1a8d 237 :EIEKLYTSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=97668 # 2a25A.358.54 read from T0547.t06.many.frag # found chain 2a25A in template set T0547 358 :LIDELYDLY 2a25A 144 :VMPHLMHQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=97669 # 1qmgA.358.369 read from T0547.t06.many.frag # found chain 1qmgA in training set T0547 358 :LIDELYDLY 1qmgA 441 :MWKVGEKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97670 # 2apjA.358.205 read from T0547.t06.many.frag # found chain 2apjA in training set T0547 358 :LIDELYDLY 2apjA 206 :YIDKVREAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=97671 # 1wb9A.358.402 read from T0547.t06.many.frag # found chain 1wb9A in template set T0547 358 :LIDELYDLY 1wb9A 403 :LRDLLERAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97672 # 1ee4A.358.171 read from T0547.t06.many.frag # found chain 1ee4A in template set T0547 358 :LIDELYDLY 1ee4A 258 :ALPTLAKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97673 # 1ecrA.358.65 read from T0547.t06.many.frag # found chain 1ecrA in template set T0547 358 :LIDELYDLY 1ecrA 66 :AQSLALRHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=97674 # 1gxuA.358.56 read from T0547.t06.many.frag # found chain 1gxuA in training set T0547 358 :LIDELYDLY 1gxuA 57 :FLVQLYQHC Number of specific fragments extracted= 1 number of extra gaps= 0 total=97675 # 1oxwA.358.116 read from T0547.t06.many.frag # found chain 1oxwA in template set T0547 358 :LIDELYDLY 1oxwA 130 :LMQVLQEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97676 # 2jdxA.358.287 read from T0547.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0547)Y366 (2jdxA)G334 because L (left) conformation "forbidden" or filtered. T0547 358 :LIDELYDL 2jdxA 326 :QIDLFKKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=97677 # 1k87A.358.490 read from T0547.t06.many.frag # found chain 1k87A in template set T0547 358 :LIDELYDLY 1k87A 491 :TLAAIYQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97678 # 1f74A.358.171 read from T0547.t06.many.frag # found chain 1f74A in training set Warning: unaligning (T0547)Y366 (1f74A)Y180 because D (zeta) conformation "forbidden" or filtered. T0547 358 :LIDELYDL 1f74A 172 :LLERLKKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=97679 # 1w9zA.359.207 read from T0547.t06.many.frag # found chain 1w9zA in template set T0547 359 :IDELYDLYK 1w9zA 208 :LTAMTNLVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97680 # 1rloA.359.122 read from T0547.t06.many.frag # found chain 1rloA in template set T0547 359 :IDELYDLYK 1rloA 123 :VALMAKHYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=97681 # 1na6A.359.144 read from T0547.t06.many.frag # found chain 1na6A in template set Warning: unaligning (T0547)K367 (1na6A)G153 because S (epsilon) conformation "forbidden" or filtered. T0547 359 :IDELYDLY 1na6A 145 :EDVIETAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=97682 # 1yj7A.359.50 read from T0547.t06.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)Y366 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. T0547 359 :IDELYDL 1yj7A 70 :ITILNNN T0547 367 :K 1yj7A 78 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=97684 # 1u5hA.359.213 read from T0547.t06.many.frag # found chain 1u5hA in template set T0547 359 :IDELYDLYK 1u5hA 214 :IPVVRKAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97685 # 1m7gA.359.112 read from T0547.t06.many.frag # found chain 1m7gA in training set T0547 359 :IDELYDLYK 1m7gA 113 :RDTARQLHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97686 # 1o9iA.359.188 read from T0547.t06.many.frag # found chain 1o9iA in training set Warning: unaligning (T0547)K367 (1o9iA)G197 because S (epsilon) conformation "forbidden" or filtered. T0547 359 :IDELYDLY 1o9iA 189 :QEELEEKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=97687 # 1h72C.359.273 read from T0547.t06.many.frag # found chain 1h72C in training set T0547 359 :IDELYDLYK 1h72C 278 :ENILRDYYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97688 # 1jbwA.359.351 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 359 :IDELYDLYK 1jbwA 352 :ADRLTAAFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97689 # 1rp4A.359.264 read from T0547.t06.many.frag # found chain 1rp4A in template set T0547 359 :IDELYDLYK 1rp4A 303 :KNKMDNVIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97690 # 1oxwA.359.117 read from T0547.t06.many.frag # found chain 1oxwA in template set T0547 359 :IDELYDLYK 1oxwA 131 :MQVLQEKLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=97691 # 1ecrA.359.66 read from T0547.t06.many.frag # found chain 1ecrA in template set T0547 359 :IDELYDLYK 1ecrA 67 :QSLALRHFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97692 # 1pii.359.341 read from T0547.t06.many.frag # found chain 1pii in template set T0547 359 :IDELYDLYK 1pii 342 :IDTLREALP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97693 # 1ee4A.359.172 read from T0547.t06.many.frag # found chain 1ee4A in template set T0547 359 :IDELYDLYK 1ee4A 259 :LPTLAKLIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=97694 # 1khxA.359.81 read from T0547.t06.many.frag # found chain 1khxA in training set T0547 359 :IDELYDLYK 1khxA 322 :NATVEMTRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97695 # 2ex0A.359.293 read from T0547.t06.many.frag # found chain 2ex0A in training set T0547 359 :IDELYDLYK 2ex0A 318 :NDYILNNAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97696 # 1hx0A.359.206 read from T0547.t06.many.frag # found chain 1hx0A in training set T0547 359 :IDELYDLYK 1hx0A 207 :IKAVLDKLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=97697 # 1m40A.359.178 read from T0547.t06.many.frag # found chain 1m40A in training set T0547 359 :IDELYDLYK 1m40A 204 :RQQLIDWME Number of specific fragments extracted= 1 number of extra gaps= 0 total=97698 # 1uzbA.359.338 read from T0547.t06.many.frag # found chain 1uzbA in template set T0547 359 :IDELYDLYK 1uzbA 339 :LERVLKRAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97699 # 2a25A.359.55 read from T0547.t06.many.frag # found chain 2a25A in template set T0547 359 :IDELYDLYK 2a25A 145 :MPHLMHQHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97700 # 1qmgA.359.370 read from T0547.t06.many.frag # found chain 1qmgA in training set T0547 359 :IDELYDLYK 1qmgA 442 :WKVGEKVRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97701 # 1vfjA.359.16 read from T0547.t06.many.frag # found chain 1vfjA in template set Warning: unaligning (T0547)Y366 (1vfjA)E24 because L (left) conformation "forbidden" or filtered. T0547 359 :IDELYDL 1vfjA 17 :LKALFQA T0547 367 :K 1vfjA 25 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=97703 # 2apjA.359.206 read from T0547.t06.many.frag # found chain 2apjA in training set T0547 359 :IDELYDLYK 2apjA 207 :IDKVREAQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97704 # 1wb9A.359.403 read from T0547.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0547)K367 (1wb9A)I412 because P (beta_P) conformation "forbidden" or filtered. T0547 359 :IDELYDLY 1wb9A 404 :RDLLERAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=97705 # 1t9iA.359.54 read from T0547.t06.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)K367 (1t9iA)G63 because T (delta_L) conformation "forbidden" or filtered. T0547 359 :IDELYDLY 1t9iA 55 :LDKLVDEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=97706 # 1us0A.359.285 read from T0547.t06.many.frag # found chain 1us0A in training set T0547 359 :IDELYDLYK 1us0A 285 :MTTLLSYNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97707 # 1zhvA.359.114 read from T0547.t06.many.frag # found chain 1zhvA in training set Warning: unaligning (T0547)Y366 (1zhvA)G123 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K367 (1zhvA)H124 because P (beta_P) conformation "forbidden" or filtered. T0547 359 :IDELYDL 1zhvA 116 :ADLLANA Number of specific fragments extracted= 1 number of extra gaps= 1 total=97708 # 1a8d.359.237 read from T0547.t06.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)Y366 (1a8d)Y245 because G (3-10) conformation "forbidden" or filtered. T0547 359 :IDELYDL 1a8d 238 :IEKLYTS T0547 367 :K 1a8d 246 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=97710 # 1llfA.359.373 read from T0547.t06.many.frag # found chain 1llfA in training set T0547 359 :IDELYDLYK 1llfA 374 :IDTLMAAYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97711 # 1kcqA.359.82 read from T0547.t06.many.frag # found chain 1kcqA in training set T0547 359 :IDELYDLYK 1kcqA 240 :PEAMLQVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=97712 # 1w9zA.360.208 read from T0547.t06.many.frag # found chain 1w9zA in template set T0547 360 :DELYDLYKS 1w9zA 209 :TAMTNLVNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97713 # 1rloA.360.123 read from T0547.t06.many.frag # found chain 1rloA in template set T0547 360 :DELYDLYKS 1rloA 124 :ALMAKHYHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97714 # 1na6A.360.145 read from T0547.t06.many.frag # found chain 1na6A in template set T0547 360 :DELYDLYKS 1na6A 146 :DVIETAIGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97715 # 1o9iA.360.189 read from T0547.t06.many.frag # found chain 1o9iA in training set Warning: unaligning (T0547)Y366 (1o9iA)Y196 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K367 (1o9iA)G197 because S (epsilon) conformation "forbidden" or filtered. T0547 360 :DELYDL 1o9iA 190 :EELEEK T0547 368 :S 1o9iA 198 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=97717 # 1yj7A.360.51 read from T0547.t06.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)Y366 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S368 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0547 360 :DELYDL 1yj7A 71 :TILNNN T0547 367 :K 1yj7A 78 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=97719 # 1m7gA.360.113 read from T0547.t06.many.frag # found chain 1m7gA in training set T0547 360 :DELYDLYKS 1m7gA 114 :DTARQLHEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=97720 # 1khxA.360.82 read from T0547.t06.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)S368 (1khxA)H331 because G (3-10) conformation "forbidden" or filtered. T0547 360 :DELYDLYK 1khxA 323 :ATVEMTRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=97721 # 1u5hA.360.214 read from T0547.t06.many.frag # found chain 1u5hA in template set Warning: unaligning (T0547)S368 because last residue in template chain is (1u5hA)A223 T0547 360 :DELYDLYK 1u5hA 215 :PVVRKAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97722 # 1ecrA.360.67 read from T0547.t06.many.frag # found chain 1ecrA in template set T0547 360 :DELYDLYKS 1ecrA 68 :SLALRHFRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=97723 # 1rp4A.360.265 read from T0547.t06.many.frag # found chain 1rp4A in template set T0547 360 :DELYDLYKS 1rp4A 304 :NKMDNVISQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=97724 # 1qmgA.360.371 read from T0547.t06.many.frag # found chain 1qmgA in training set T0547 360 :DELYDLYKS 1qmgA 443 :KVGEKVRSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=97725 # 1hx0A.360.207 read from T0547.t06.many.frag # found chain 1hx0A in training set T0547 360 :DELYDLYKS 1hx0A 208 :KAVLDKLHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97726 # 2fokA.360.391 read from T0547.t06.many.frag # found chain 2fokA in template set T0547 360 :DELYDLYKS 2fokA 392 :EKKSELRHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97727 # 1h72C.360.274 read from T0547.t06.many.frag # found chain 1h72C in training set Warning: unaligning (T0547)Y366 (1h72C)Y285 because D (zeta) conformation "forbidden" or filtered. T0547 360 :DELYDL 1h72C 279 :NILRDY T0547 367 :KS 1h72C 286 :EN Number of specific fragments extracted= 2 number of extra gaps= 1 total=97729 # 1d0cA.360.235 read from T0547.t06.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)Y366 (1d0cA)G280 because T (delta_L) conformation "forbidden" or filtered. T0547 360 :DELYDL 1d0cA 274 :ELCIQH T0547 367 :KS 1d0cA 281 :WT Number of specific fragments extracted= 2 number of extra gaps= 1 total=97731 # 1oxwA.360.118 read from T0547.t06.many.frag # found chain 1oxwA in template set Warning: unaligning (T0547)K367 (1oxwA)G139 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S368 (1oxwA)E140 because G (3-10) conformation "forbidden" or filtered. T0547 360 :DELYDLY 1oxwA 132 :QVLQEKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=97732 # 1t9iA.360.55 read from T0547.t06.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)K367 (1t9iA)G63 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S368 (1t9iA)V64 because Y (epsilon') conformation "forbidden" or filtered. T0547 360 :DELYDLY 1t9iA 56 :DKLVDEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=97733 # 2a25A.360.56 read from T0547.t06.many.frag # found chain 2a25A in template set T0547 360 :DELYDLYKS 2a25A 146 :PHLMHQHKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97734 # 2ex0A.360.294 read from T0547.t06.many.frag # found chain 2ex0A in training set Warning: unaligning (T0547)K367 (2ex0A)K326 because P (beta_P) conformation "forbidden" or filtered. T0547 360 :DELYDLY 2ex0A 319 :DYILNNA T0547 368 :S 2ex0A 327 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=97736 # 1kcqA.360.83 read from T0547.t06.many.frag # found chain 1kcqA in training set Warning: unaligning (T0547)K367 (1kcqA)G248 because S (epsilon) conformation "forbidden" or filtered. T0547 360 :DELYDLY 1kcqA 241 :EAMLQVL T0547 368 :S 1kcqA 249 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=97738 # 1jbwA.360.352 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 360 :DELYDLYKS 1jbwA 353 :DRLTAAFST Number of specific fragments extracted= 1 number of extra gaps= 0 total=97739 # 1g5tA.360.164 read from T0547.t06.many.frag # found chain 1g5tA in training set T0547 360 :DELYDLYKS 1g5tA 165 :RDILDLADT Number of specific fragments extracted= 1 number of extra gaps= 0 total=97740 # 1a8d.360.238 read from T0547.t06.many.frag # found chain 1a8d in training set T0547 360 :DELYDLYKS 1a8d 239 :EKLYTSYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97741 # 1uw4A.360.15 read from T0547.t06.many.frag # found chain 1uw4A in template set Warning: unaligning (T0547)K367 (1uw4A)Q72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S368 (1uw4A)P73 because C (cis) conformation "forbidden" or filtered. T0547 360 :DELYDLY 1uw4A 65 :EQLQEHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=97742 # 1qqp3.360.45 read from T0547.t06.many.frag # found chain 1qqp3 in template set T0547 360 :DELYDLYKS 1qqp3 46 :DVAEACPTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=97743 # 1wb9A.360.404 read from T0547.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0547)K367 (1wb9A)I412 because P (beta_P) conformation "forbidden" or filtered. T0547 360 :DELYDLY 1wb9A 405 :DLLERAI T0547 368 :S 1wb9A 413 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=97745 # 1m40A.360.179 read from T0547.t06.many.frag # found chain 1m40A in training set T0547 360 :DELYDLYKS 1m40A 205 :QQLIDWMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97746 # 2jdxA.360.289 read from T0547.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0547)Y366 (2jdxA)G334 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K367 (2jdxA)W335 because P (beta_P) conformation "forbidden" or filtered. T0547 360 :DELYDL 2jdxA 328 :DLFKKA T0547 368 :S 2jdxA 336 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=97748 # 1vfjA.360.17 read from T0547.t06.many.frag # found chain 1vfjA in template set Warning: unaligning (T0547)Y366 (1vfjA)E24 because L (left) conformation "forbidden" or filtered. T0547 360 :DELYDL 1vfjA 18 :KALFQA T0547 367 :KS 1vfjA 25 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=97750 # 1wdpA.360.470 read from T0547.t06.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)S368 (1wdpA)P479 because P (beta_P) conformation "forbidden" or filtered. T0547 360 :DELYDLYK 1wdpA 471 :EVLLEATK Number of specific fragments extracted= 1 number of extra gaps= 1 total=97751 # 1w9zA.361.209 read from T0547.t06.many.frag # found chain 1w9zA in template set T0547 361 :ELYDLYKSI 1w9zA 210 :AMTNLVNSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97752 # 1o9iA.361.190 read from T0547.t06.many.frag # found chain 1o9iA in training set Warning: unaligning (T0547)K367 (1o9iA)G197 because S (epsilon) conformation "forbidden" or filtered. T0547 361 :ELYDLY 1o9iA 191 :ELEEKY T0547 368 :SI 1o9iA 198 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=97754 # 1rloA.361.124 read from T0547.t06.many.frag # found chain 1rloA in template set T0547 361 :ELYDLYKSI 1rloA 125 :LMAKHYHRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97755 # 1na6A.361.146 read from T0547.t06.many.frag # found chain 1na6A in template set Warning: unaligning (T0547)K367 (1na6A)G153 because S (epsilon) conformation "forbidden" or filtered. T0547 361 :ELYDLY 1na6A 147 :VIETAI T0547 368 :SI 1na6A 154 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=97757 # 1m7gA.361.114 read from T0547.t06.many.frag # found chain 1m7gA in training set T0547 361 :ELYDLYKSI 1m7gA 115 :TARQLHEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97758 # 1khxA.361.83 read from T0547.t06.many.frag # found chain 1khxA in training set T0547 361 :ELYDLYKSI 1khxA 324 :TVEMTRRHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97759 # 1rp4A.361.266 read from T0547.t06.many.frag # found chain 1rp4A in template set T0547 361 :ELYDLYKSI 1rp4A 305 :KMDNVISQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97760 # 2fokA.361.392 read from T0547.t06.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)K367 (2fokA)H399 because N (gamma') conformation "forbidden" or filtered. T0547 361 :ELYDLY 2fokA 393 :KKSELR T0547 368 :SI 2fokA 400 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=97762 # 1qmgA.361.372 read from T0547.t06.many.frag # found chain 1qmgA in training set T0547 361 :ELYDLYKSI 1qmgA 444 :VGEKVRSVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97763 # 1ecrA.361.68 read from T0547.t06.many.frag # found chain 1ecrA in template set T0547 361 :ELYDLYKSI 1ecrA 69 :LALRHFRHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97764 # 1h72C.361.275 read from T0547.t06.many.frag # found chain 1h72C in training set T0547 361 :ELYDLYKSI 1h72C 280 :ILRDYYENT Number of specific fragments extracted= 1 number of extra gaps= 0 total=97765 # 1uw4A.361.16 read from T0547.t06.many.frag # found chain 1uw4A in template set Warning: unaligning (T0547)K367 (1uw4A)Q72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S368 (1uw4A)P73 because C (cis) conformation "forbidden" or filtered. T0547 361 :ELYDLY 1uw4A 66 :QLQEHL T0547 369 :I 1uw4A 74 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=97767 # 1t9iA.361.56 read from T0547.t06.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)S368 (1t9iA)V64 because Y (epsilon') conformation "forbidden" or filtered. T0547 361 :ELYDLYK 1t9iA 57 :KLVDEIG T0547 369 :I 1t9iA 65 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=97769 # 1hx0A.361.208 read from T0547.t06.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)S368 (1hx0A)N216 because P (beta_P) conformation "forbidden" or filtered. T0547 361 :ELYDLYK 1hx0A 209 :AVLDKLH T0547 369 :I 1hx0A 217 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=97771 # 1g5tA.361.165 read from T0547.t06.many.frag # found chain 1g5tA in training set T0547 361 :ELYDLYKSI 1g5tA 166 :DILDLADTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=97772 # 1kcqA.361.84 read from T0547.t06.many.frag # found chain 1kcqA in training set T0547 361 :ELYDLYKSI 1kcqA 242 :AMLQVLGPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97773 # 1u5hA.361.215 read from T0547.t06.many.frag # found chain 1u5hA in template set Warning: unaligning (T0547)S368 because last residue in template chain is (1u5hA)A223 T0547 361 :ELYDLYK 1u5hA 216 :VVRKAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97774 # 2ex0A.361.295 read from T0547.t06.many.frag # found chain 2ex0A in training set T0547 361 :ELYDLYKSI 2ex0A 320 :YILNNAKNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97775 # 1yj7A.361.52 read from T0547.t06.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)S368 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0547 361 :ELYDLYK 1yj7A 72 :ILNNNGF T0547 369 :I 1yj7A 80 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=97777 # 2bjiA.361.260 read from T0547.t06.many.frag # found chain 2bjiA in training set Warning: unaligning (T0547)K367 (2bjiA)Q1267 because P (beta_P) conformation "forbidden" or filtered. T0547 361 :ELYDLY 2bjiA 1261 :RIAKEI T0547 368 :SI 2bjiA 1268 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=97779 # 1su0B.361.12 read from T0547.t06.many.frag # found chain 1su0B in template set T0547 361 :ELYDLYKSI 1su0B 13 :VVADHSKRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97780 # 1kyfA.361.143 read from T0547.t06.many.frag # found chain 1kyfA in training set T0547 361 :ELYDLYKSI 1kyfA 835 :DFFQRWKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97781 # 1uzbA.361.340 read from T0547.t06.many.frag # found chain 1uzbA in template set T0547 361 :ELYDLYKSI 1uzbA 341 :RVLKRAERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97782 # 1m40A.361.180 read from T0547.t06.many.frag # found chain 1m40A in training set T0547 361 :ELYDLYKSI 1m40A 206 :QLIDWMEAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=97783 # 2a25A.361.57 read from T0547.t06.many.frag # found chain 2a25A in template set T0547 361 :ELYDLYKSI 2a25A 147 :HLMHQHKSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97784 # 1oxwA.361.119 read from T0547.t06.many.frag # found chain 1oxwA in template set Warning: unaligning (T0547)Y366 (1oxwA)L138 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K367 (1oxwA)G139 because S (epsilon) conformation "forbidden" or filtered. T0547 361 :ELYDL 1oxwA 133 :VLQEK T0547 368 :SI 1oxwA 140 :ET Number of specific fragments extracted= 2 number of extra gaps= 1 total=97786 # 1ikpA.361.525 read from T0547.t06.many.frag # found chain 1ikpA in training set Warning: unaligning (T0547)K367 (1ikpA)G532 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S368 (1ikpA)H533 because Y (epsilon') conformation "forbidden" or filtered. T0547 361 :ELYDLY 1ikpA 526 :EVERLI T0547 369 :I 1ikpA 534 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=97788 # 1jbwA.361.353 read from T0547.t06.many.frag # found chain 1jbwA in template set T0547 361 :ELYDLYKSI 1jbwA 354 :RLTAAFSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=97789 # 1hz4A.361.232 read from T0547.t06.many.frag # found chain 1hz4A in training set T0547 361 :ELYDLYKSI 1hz4A 231 :AAANWLRHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=97790 # 1d0cA.361.236 read from T0547.t06.many.frag # found chain 1d0cA in training set T0547 361 :ELYDLYKSI 1d0cA 275 :LCIQHGWTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97791 # 1w9zA.362.210 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)K370 (1w9zA)V219 because P (beta_P) conformation "forbidden" or filtered. T0547 362 :LYDLYKSI 1w9zA 211 :MTNLVNSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=97792 # 1o9iA.362.191 read from T0547.t06.many.frag # found chain 1o9iA in training set Warning: unaligning (T0547)K367 (1o9iA)G197 because S (epsilon) conformation "forbidden" or filtered. T0547 362 :LYDLY 1o9iA 192 :LEEKY T0547 368 :SIK 1o9iA 198 :IIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=97794 # 1rloA.362.125 read from T0547.t06.many.frag # found chain 1rloA in template set T0547 362 :LYDLYKSIK 1rloA 126 :MAKHYHRLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97795 # 1na6A.362.147 read from T0547.t06.many.frag # found chain 1na6A in template set Warning: unaligning (T0547)K367 (1na6A)G153 because S (epsilon) conformation "forbidden" or filtered. T0547 362 :LYDLY 1na6A 148 :IETAI T0547 368 :SIK 1na6A 154 :EVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=97797 # 1m7gA.362.115 read from T0547.t06.many.frag # found chain 1m7gA in training set T0547 362 :LYDLYKSIK 1m7gA 116 :ARQLHEVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=97798 # 2fokA.362.393 read from T0547.t06.many.frag # found chain 2fokA in template set T0547 362 :LYDLYKSIK 2fokA 394 :KSELRHKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97799 # 1qmgA.362.373 read from T0547.t06.many.frag # found chain 1qmgA in training set T0547 362 :LYDLYKSIK 1qmgA 445 :GEKVRSVRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97800 # 1t9iA.362.57 read from T0547.t06.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)K367 (1t9iA)G63 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S368 (1t9iA)V64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 (1t9iA)Y66 because Y (epsilon') conformation "forbidden" or filtered. T0547 362 :LYDLY 1t9iA 58 :LVDEI T0547 369 :I 1t9iA 65 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=97802 # 1ecrA.362.69 read from T0547.t06.many.frag # found chain 1ecrA in template set T0547 362 :LYDLYKSIK 1ecrA 70 :ALRHFRHLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=97803 # 1hz4A.362.233 read from T0547.t06.many.frag # found chain 1hz4A in training set T0547 362 :LYDLYKSIK 1hz4A 232 :AANWLRHTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97804 # 1uw4A.362.17 read from T0547.t06.many.frag # found chain 1uw4A in template set Warning: unaligning (T0547)S368 (1uw4A)P73 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 (1uw4A)P75 because P (beta_P) conformation "forbidden" or filtered. T0547 362 :LYDLYK 1uw4A 67 :LQEHLQ T0547 369 :I 1uw4A 74 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=97806 # 1su0B.362.13 read from T0547.t06.many.frag # found chain 1su0B in template set T0547 362 :LYDLYKSIK 1su0B 14 :VADHSKRPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=97807 # 1uzbA.362.341 read from T0547.t06.many.frag # found chain 1uzbA in template set T0547 362 :LYDLYKSIK 1uzbA 342 :VLKRAERLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97808 # 1g5tA.362.166 read from T0547.t06.many.frag # found chain 1g5tA in training set T0547 362 :LYDLYKSIK 1g5tA 167 :ILDLADTVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97809 # 1rp4A.362.267 read from T0547.t06.many.frag # found chain 1rp4A in template set T0547 362 :LYDLYKSIK 1rp4A 306 :MDNVISQLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=97810 # 1yj7A.362.53 read from T0547.t06.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)S368 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0547 362 :LYDLYK 1yj7A 73 :LNNNGF T0547 369 :IK 1yj7A 80 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=97812 # 2bjiA.362.261 read from T0547.t06.many.frag # found chain 2bjiA in training set T0547 362 :LYDLYKSIK 2bjiA 1262 :IAKEIQIIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97813 1y1oA expands to /projects/compbio/data/pdb/1y1o.pdb.gz 1y1oA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1y1oA.362.174 read from T0547.t06.many.frag # adding 1y1oA to template set # found chain 1y1oA in template set T0547 362 :LYDLYKSIK 1y1oA 172 :IERHGHSIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97814 # 1ckmA.362.167 read from T0547.t06.many.frag # found chain 1ckmA in template set T0547 362 :LYDLYKSIK 1ckmA 168 :MKRSLKEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97815 # 1h72C.362.276 read from T0547.t06.many.frag # found chain 1h72C in training set T0547 362 :LYDLYKSIK 1h72C 281 :LRDYYENTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97816 # 2a25A.362.58 read from T0547.t06.many.frag # found chain 2a25A in template set T0547 362 :LYDLYKSIK 2a25A 148 :LMHQHKSIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=97817 # 1xtoA.362.62 read from T0547.t06.many.frag # found chain 1xtoA in template set T0547 362 :LYDLYKSIK 1xtoA 63 :QLQAFAPMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=97818 # 1hx0A.362.209 read from T0547.t06.many.frag # found chain 1hx0A in training set T0547 362 :LYDLYKSIK 1hx0A 210 :VLDKLHNLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97819 # 1e42A.362.157 read from T0547.t06.many.frag # found chain 1e42A in template set T0547 362 :LYDLYKSIK 1e42A 837 :FLATWKDIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97820 # 1ikpA.362.526 read from T0547.t06.many.frag # found chain 1ikpA in training set Warning: unaligning (T0547)K367 (1ikpA)G532 because T (delta_L) conformation "forbidden" or filtered. T0547 362 :LYDLY 1ikpA 527 :VERLI T0547 368 :SIK 1ikpA 533 :HPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=97822 # 1kyfA.362.144 read from T0547.t06.many.frag # found chain 1kyfA in training set T0547 362 :LYDLYKSIK 1kyfA 836 :FFQRWKQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97823 # 1d0cA.362.237 read from T0547.t06.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)Y366 (1d0cA)G280 because T (delta_L) conformation "forbidden" or filtered. T0547 362 :LYDL 1d0cA 276 :CIQH T0547 367 :KSIK 1d0cA 281 :WTPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=97825 # 1jmkC.362.127 read from T0547.t06.many.frag # found chain 1jmkC in training set T0547 362 :LYDLYKSIK 1jmkC 129 :LMNVNRDNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97826 # 1wdpA.362.472 read from T0547.t06.many.frag # found chain 1wdpA in training set T0547 362 :LYDLYKSIK 1wdpA 473 :LLEATKPTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=97827 # 1i12A.362.20 read from T0547.t06.many.frag # found chain 1i12A in training set Warning: unaligning (T0547)K370 (1i12A)T28 because Y (epsilon') conformation "forbidden" or filtered. T0547 362 :LYDLYKSI 1i12A 20 :VTETLKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=97828 # 1o9iA.363.192 read from T0547.t06.many.frag # found chain 1o9iA in training set Warning: unaligning (T0547)K367 (1o9iA)G197 because S (epsilon) conformation "forbidden" or filtered. T0547 363 :YDLY 1o9iA 193 :EEKY T0547 368 :SIKP 1o9iA 198 :IIVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=97830 # 1w9zA.363.211 read from T0547.t06.many.frag # found chain 1w9zA in template set T0547 363 :YDLYKSIKP 1w9zA 212 :TNLVNSLVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97831 # 1rloA.363.126 read from T0547.t06.many.frag # found chain 1rloA in template set T0547 363 :YDLYKSIKP 1rloA 127 :AKHYHRLKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97832 # 1m7gA.363.116 read from T0547.t06.many.frag # found chain 1m7gA in training set Warning: unaligning (T0547)S368 (1m7gA)V122 because P (beta_P) conformation "forbidden" or filtered. T0547 363 :YDLYK 1m7gA 117 :RQLHE T0547 369 :IKP 1m7gA 123 :ATP Number of specific fragments extracted= 2 number of extra gaps= 1 total=97834 # 2fokA.363.394 read from T0547.t06.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 2fokA 395 :SELRHKLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=97835 # 1t9iA.363.58 read from T0547.t06.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)S368 (1t9iA)V64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I369 (1t9iA)G65 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 (1t9iA)Y66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1t9iA)V67 because E (beta_S) conformation "forbidden" or filtered. T0547 363 :YDLYK 1t9iA 59 :VDEIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=97836 # 1ecrA.363.70 read from T0547.t06.many.frag # found chain 1ecrA in template set T0547 363 :YDLYKSIKP 1ecrA 71 :LRHFRHLFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=97837 # 1uzbA.363.342 read from T0547.t06.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)K370 (1uzbA)S350 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1uzbA)V351 because E (beta_S) conformation "forbidden" or filtered. T0547 363 :YDLYKSI 1uzbA 343 :LKRAERL Number of specific fragments extracted= 1 number of extra gaps= 1 total=97838 # 2bw3A.363.448 read from T0547.t06.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)P371 (2bw3A)V532 because E (beta_S) conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 2bw3A 524 :FEFYRKEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=97839 # 1ckmA.363.168 read from T0547.t06.many.frag # found chain 1ckmA in template set T0547 363 :YDLYKSIKP 1ckmA 169 :KRSLKEFKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97840 # 1na6A.363.148 read from T0547.t06.many.frag # found chain 1na6A in template set Warning: unaligning (T0547)K367 (1na6A)G153 because S (epsilon) conformation "forbidden" or filtered. T0547 363 :YDLY 1na6A 149 :ETAI T0547 368 :SIKP 1na6A 154 :EVIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=97842 # 1hz4A.363.234 read from T0547.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0547)P371 (1hz4A)K241 because D (zeta) conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1hz4A 233 :ANWLRHTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=97843 # 1g5tA.363.167 read from T0547.t06.many.frag # found chain 1g5tA in training set Warning: unaligning (T0547)P371 (1g5tA)E176 because E (beta_S) conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1g5tA 168 :LDLADTVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=97844 # 2a25A.363.59 read from T0547.t06.many.frag # found chain 2a25A in template set Warning: unaligning (T0547)K370 (2a25A)T156 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2a25A)T157 because E (beta_S) conformation "forbidden" or filtered. T0547 363 :YDLYKSI 2a25A 149 :MHQHKSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=97845 # 1xtoA.363.63 read from T0547.t06.many.frag # found chain 1xtoA in template set T0547 363 :YDLYKSIKP 1xtoA 64 :LQAFAPMQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97846 # 1uw4A.363.18 read from T0547.t06.many.frag # found chain 1uw4A in template set Warning: unaligning (T0547)S368 (1uw4A)P73 because C (cis) conformation "forbidden" or filtered. T0547 363 :YDLYK 1uw4A 68 :QEHLQ T0547 369 :IKP 1uw4A 74 :MPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97848 # 1qmgA.363.374 read from T0547.t06.many.frag # found chain 1qmgA in training set T0547 363 :YDLYKSIKP 1qmgA 446 :EKVRSVRPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97849 # 1y1oA.363.175 read from T0547.t06.many.frag # found chain 1y1oA in template set Warning: unaligning (T0547)P371 (1y1oA)L181 because E (beta_S) conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1y1oA 173 :ERHGHSIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=97850 # 1e42A.363.158 read from T0547.t06.many.frag # found chain 1e42A in template set T0547 363 :YDLYKSIKP 1e42A 838 :LATWKDIPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97851 # 1rp4A.363.268 read from T0547.t06.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)P371 (1rp4A)T315 because Y (epsilon') conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1rp4A 307 :DNVISQLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=97852 # 1scfA.363.147 read from T0547.t06.many.frag # found chain 1scfA in template set T0547 363 :YDLYKSIKP 1scfA 123 :IDAFKDFVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=97853 # 1kyfA.363.145 read from T0547.t06.many.frag # found chain 1kyfA in training set T0547 363 :YDLYKSIKP 1kyfA 837 :FQRWKQLSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=97854 # 1su0B.363.14 read from T0547.t06.many.frag # found chain 1su0B in template set Warning: unaligning (T0547)P371 (1su0B)H23 because L (left) conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1su0B 15 :ADHSKRPH Number of specific fragments extracted= 1 number of extra gaps= 1 total=97855 # 1i12A.363.21 read from T0547.t06.many.frag # found chain 1i12A in training set Warning: unaligning (T0547)K370 (1i12A)T28 because Y (epsilon') conformation "forbidden" or filtered. T0547 363 :YDLYKSI 1i12A 21 :TETLKVL T0547 371 :P 1i12A 29 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=97857 # 1hxn.363.102 read from T0547.t06.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)K367 (1hxn)G322 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1hxn)V326 because G (3-10) conformation "forbidden" or filtered. T0547 363 :YDLY 1hxn 318 :EKEL T0547 368 :SIK 1hxn 323 :SPP Number of specific fragments extracted= 2 number of extra gaps= 2 total=97859 # 2bjiA.363.262 read from T0547.t06.many.frag # found chain 2bjiA in training set Warning: unaligning (T0547)K370 (2bjiA)P1270 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2bjiA)L1271 because E (beta_S) conformation "forbidden" or filtered. T0547 363 :YDLYKSI 2bjiA 1263 :AKEIQII Number of specific fragments extracted= 1 number of extra gaps= 1 total=97860 # 1bco.363.221 read from T0547.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0547)S368 (1bco)R474 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1bco)V477 because E (beta_S) conformation "forbidden" or filtered. T0547 363 :YDLYK 1bco 469 :EREYA T0547 369 :IK 1bco 475 :TI Number of specific fragments extracted= 2 number of extra gaps= 2 total=97862 # 1acc.363.612 read from T0547.t06.many.frag # found chain 1acc in template set Warning: unaligning (T0547)P371 (1acc)N621 because Y (epsilon') conformation "forbidden" or filtered. T0547 363 :YDLYKSIK 1acc 613 :KEAHREVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=97863 # 1yj7A.363.54 read from T0547.t06.many.frag # found chain 1yj7A in training set Warning: unaligning (T0547)Y366 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S368 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0547 363 :YDL 1yj7A 74 :NNN T0547 367 :K 1yj7A 78 :F T0547 369 :IKP 1yj7A 80 :KKK Number of specific fragments extracted= 3 number of extra gaps= 2 total=97866 # 1jmkC.363.128 read from T0547.t06.many.frag # found chain 1jmkC in training set Warning: unaligning (T0547)Y366 (1jmkC)N133 because G (3-10) conformation "forbidden" or filtered. T0547 363 :YDL 1jmkC 130 :MNV T0547 367 :KSIKP 1jmkC 134 :RDNEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=97868 # 1o9iA.364.193 read from T0547.t06.many.frag # found chain 1o9iA in training set Warning: unaligning (T0547)K367 (1o9iA)G197 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1o9iA)P201 because C (cis) conformation "forbidden" or filtered. T0547 364 :DLY 1o9iA 194 :EKY T0547 368 :SIK 1o9iA 198 :IIV T0547 372 :S 1o9iA 202 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=97871 # 1w9zA.364.212 read from T0547.t06.many.frag # found chain 1w9zA in template set T0547 364 :DLYKSIKPS 1w9zA 213 :NLVNSLVPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=97872 # 1m7gA.364.117 read from T0547.t06.many.frag # found chain 1m7gA in training set Warning: unaligning (T0547)S372 (1m7gA)G126 because T (delta_L) conformation "forbidden" or filtered. T0547 364 :DLYKSIKP 1m7gA 118 :QLHEVATP Number of specific fragments extracted= 1 number of extra gaps= 1 total=97873 # 1rloA.364.127 read from T0547.t06.many.frag # found chain 1rloA in template set T0547 364 :DLYKSIKPS 1rloA 128 :KHYHRLKPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=97874 # 1uzbA.364.343 read from T0547.t06.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)P371 (1uzbA)V351 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1uzbA)G352 because Y (epsilon') conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1uzbA 344 :KRAERLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=97875 # 2fokA.364.395 read from T0547.t06.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 364 :DLYKSIK 2fokA 396 :ELRHKLK T0547 372 :S 2fokA 404 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=97877 # 1hz4A.364.235 read from T0547.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0547)K370 (1hz4A)A240 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1hz4A)K241 because D (zeta) conformation "forbidden" or filtered. T0547 364 :DLYKSI 1hz4A 234 :NWLRHT T0547 372 :S 1hz4A 242 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=97879 # 1t9iA.364.59 read from T0547.t06.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)K367 (1t9iA)G63 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S368 (1t9iA)V64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 (1t9iA)Y66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1t9iA)V67 because E (beta_S) conformation "forbidden" or filtered. T0547 364 :DLY 1t9iA 60 :DEI T0547 369 :I 1t9iA 65 :G T0547 372 :S 1t9iA 68 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=97882 # 1ecrA.364.71 read from T0547.t06.many.frag # found chain 1ecrA in template set T0547 364 :DLYKSIKPS 1ecrA 72 :RHFRHLFIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=97883 # 1ckmA.364.169 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)Y366 (1ckmA)L172 because G (3-10) conformation "forbidden" or filtered. T0547 364 :DL 1ckmA 170 :RS T0547 367 :KSIKPS 1ckmA 173 :KEFKNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=97885 # 2bw3A.364.449 read from T0547.t06.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)K370 (2bw3A)I531 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2bw3A)V532 because E (beta_S) conformation "forbidden" or filtered. T0547 364 :DLYKSI 2bw3A 525 :EFYRKE T0547 372 :S 2bw3A 533 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=97887 # 2a25A.364.60 read from T0547.t06.many.frag # found chain 2a25A in template set Warning: unaligning (T0547)K370 (2a25A)T156 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2a25A)T157 because E (beta_S) conformation "forbidden" or filtered. T0547 364 :DLYKSI 2a25A 150 :HQHKSI T0547 372 :S 2a25A 158 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=97889 # 1g5tA.364.168 read from T0547.t06.many.frag # found chain 1g5tA in training set Warning: unaligning (T0547)P371 (1g5tA)E176 because E (beta_S) conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1g5tA 169 :DLADTVS T0547 372 :S 1g5tA 177 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=97891 # 1no7A.364.386 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)K370 (1no7A)V843 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1no7A)V844 because D (zeta) conformation "forbidden" or filtered. T0547 364 :DLYKSI 1no7A 837 :ATLQNM T0547 372 :S 1no7A 845 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=97893 # 1i12A.364.22 read from T0547.t06.many.frag # found chain 1i12A in training set Warning: unaligning (T0547)K370 (1i12A)T28 because Y (epsilon') conformation "forbidden" or filtered. T0547 364 :DLYKSI 1i12A 22 :ETLKVL T0547 371 :PS 1i12A 29 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=97895 # 1hxn.364.103 read from T0547.t06.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)Y366 (1hxn)L321 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K367 (1hxn)G322 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1hxn)V326 because G (3-10) conformation "forbidden" or filtered. T0547 364 :DL 1hxn 319 :KE T0547 368 :SIK 1hxn 323 :SPP T0547 372 :S 1hxn 327 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=97898 # 1scfA.364.148 read from T0547.t06.many.frag # found chain 1scfA in template set T0547 364 :DLYKSIKPS 1scfA 124 :DAFKDFVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97899 # 1pc6A.364.18 read from T0547.t06.many.frag # found chain 1pc6A in template set T0547 364 :DLYKSIKPS 1pc6A 19 :HAVQQILPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=97900 # 1e42A.364.159 read from T0547.t06.many.frag # found chain 1e42A in template set T0547 364 :DLYKSIKPS 1e42A 839 :ATWKDIPNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97901 # 1xtoA.364.64 read from T0547.t06.many.frag # found chain 1xtoA in template set Warning: unaligning (T0547)S372 (1xtoA)A73 because L (left) conformation "forbidden" or filtered. T0547 364 :DLYKSIKP 1xtoA 65 :QAFAPMQP Number of specific fragments extracted= 1 number of extra gaps= 1 total=97902 # 1kyfA.364.146 read from T0547.t06.many.frag # found chain 1kyfA in training set T0547 364 :DLYKSIKPS 1kyfA 838 :QRWKQLSNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97903 # 1rp4A.364.269 read from T0547.t06.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)P371 (1rp4A)T315 because Y (epsilon') conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1rp4A 308 :NVISQLD T0547 372 :S 1rp4A 316 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=97905 # 1y1oA.364.176 read from T0547.t06.many.frag # found chain 1y1oA in template set Warning: unaligning (T0547)P371 (1y1oA)L181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1y1oA)G182 because Y (epsilon') conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1y1oA 174 :RHGHSIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=97906 # 1tu1A.364.133 read from T0547.t06.many.frag # found chain 1tu1A in template set T0547 364 :DLYKSIKPS 1tu1A 132 :QAMQTLVPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=97907 # 1su0B.364.15 read from T0547.t06.many.frag # found chain 1su0B in template set Warning: unaligning (T0547)P371 (1su0B)H23 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1su0B)H24 because P (beta_P) conformation "forbidden" or filtered. T0547 364 :DLYKSIK 1su0B 16 :DHSKRPH Number of specific fragments extracted= 1 number of extra gaps= 1 total=97908 # 1wdpA.364.474 read from T0547.t06.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)K367 (1wdpA)K478 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 (1wdpA)L481 because P (beta_P) conformation "forbidden" or filtered. T0547 364 :DLY 1wdpA 475 :EAT T0547 368 :SI 1wdpA 479 :PT T0547 371 :PS 1wdpA 482 :PF Number of specific fragments extracted= 3 number of extra gaps= 2 total=97911 # 2akaA.364.401 read from T0547.t06.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)P371 (2akaA)I398 because E (beta_S) conformation "forbidden" or filtered. T0547 364 :DLYKSIK 2akaA 391 :KALMEPR T0547 372 :S 2akaA 399 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=97913 # 1qmgA.364.375 read from T0547.t06.many.frag # found chain 1qmgA in training set Warning: unaligning (T0547)S372 (1qmgA)G455 because T (delta_L) conformation "forbidden" or filtered. T0547 364 :DLYKSIKP 1qmgA 447 :KVRSVRPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=97914 # 2anxA.364.117 read from T0547.t06.many.frag # found chain 2anxA in training set T0547 364 :DLYKSIKPS 2anxA 118 :DAFLLWKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97915 # 1xv5A.364.152 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)K367 (1xv5A)Y1155 because D (zeta) conformation "forbidden" or filtered. T0547 364 :DLY 1xv5A 1152 :KEW T0547 368 :SIKPS 1xv5A 1156 :PETVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=97917 # 1o9iA.365.194 read from T0547.t06.many.frag # found chain 1o9iA in training set Warning: unaligning (T0547)K367 (1o9iA)G197 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 (1o9iA)V200 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1o9iA)P201 because C (cis) conformation "forbidden" or filtered. T0547 365 :LY 1o9iA 195 :KY T0547 368 :SI 1o9iA 198 :II T0547 372 :SN 1o9iA 202 :GD Number of specific fragments extracted= 3 number of extra gaps= 2 total=97920 # 1w9zA.365.213 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)K370 (1w9zA)V219 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKSI 1w9zA 214 :LVNSL T0547 371 :PSN 1w9zA 220 :PGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97922 # 1m7gA.365.118 read from T0547.t06.many.frag # found chain 1m7gA in training set Warning: unaligning (T0547)K370 (1m7gA)T124 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKSI 1m7gA 119 :LHEVA T0547 371 :PSN 1m7gA 125 :PGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97924 # 1uzbA.365.344 read from T0547.t06.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)P371 (1uzbA)V351 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1uzbA)G352 because Y (epsilon') conformation "forbidden" or filtered. T0547 365 :LYKSIK 1uzbA 345 :RAERLS T0547 373 :N 1uzbA 353 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=97926 # 1hz4A.365.236 read from T0547.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0547)K370 (1hz4A)A240 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1hz4A)K241 because D (zeta) conformation "forbidden" or filtered. T0547 365 :LYKSI 1hz4A 235 :WLRHT T0547 372 :SN 1hz4A 242 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97928 # 1ckmA.365.170 read from T0547.t06.many.frag # found chain 1ckmA in template set T0547 365 :LYKSIKPSN 1ckmA 171 :SLKEFKNVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97929 # 2a25A.365.61 read from T0547.t06.many.frag # found chain 2a25A in template set Warning: unaligning (T0547)P371 (2a25A)T157 because E (beta_S) conformation "forbidden" or filtered. T0547 365 :LYKSIK 2a25A 151 :QHKSIT T0547 372 :SN 2a25A 158 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=97931 # 1pc6A.365.19 read from T0547.t06.many.frag # found chain 1pc6A in template set T0547 365 :LYKSIKPSN 1pc6A 20 :AVQQILPDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=97932 # 1no7A.365.387 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P371 (1no7A)V844 because D (zeta) conformation "forbidden" or filtered. T0547 365 :LYKSIK 1no7A 838 :TLQNMV T0547 372 :SN 1no7A 845 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=97934 # 1t9iA.365.60 read from T0547.t06.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)K367 (1t9iA)G63 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1t9iA)V67 because E (beta_S) conformation "forbidden" or filtered. T0547 365 :LY 1t9iA 61 :EI T0547 368 :SIK 1t9iA 64 :VGY T0547 372 :SN 1t9iA 68 :RD Number of specific fragments extracted= 3 number of extra gaps= 2 total=97937 # 1rloA.365.128 read from T0547.t06.many.frag # found chain 1rloA in template set T0547 365 :LYKSIKPSN 1rloA 129 :HYHRLKPVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=97938 # 2fokA.365.396 read from T0547.t06.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 365 :LYKSIK 2fokA 397 :LRHKLK T0547 372 :SN 2fokA 404 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=97940 # 2bw3A.365.450 read from T0547.t06.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)P371 (2bw3A)V532 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (2bw3A)L534 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKSIK 2bw3A 526 :FYRKEI T0547 372 :S 2bw3A 533 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=97942 # 1ecrA.365.72 read from T0547.t06.many.frag # found chain 1ecrA in template set T0547 365 :LYKSIKPSN 1ecrA 73 :HFRHLFIQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=97943 # 1scfA.365.149 read from T0547.t06.many.frag # found chain 1scfA in template set T0547 365 :LYKSIKPSN 1scfA 125 :AFKDFVVAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=97944 # 1up8A.365.302 read from T0547.t06.many.frag # found chain 1up8A in template set Warning: unaligning (T0547)P371 (1up8A)F308 because G (3-10) conformation "forbidden" or filtered. T0547 365 :LYKSIK 1up8A 302 :VQDAAD T0547 372 :SN 1up8A 309 :RG Number of specific fragments extracted= 2 number of extra gaps= 1 total=97946 # 1hxn.365.104 read from T0547.t06.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)Y366 (1hxn)L321 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1hxn)V326 because G (3-10) conformation "forbidden" or filtered. T0547 365 :L 1hxn 320 :E T0547 367 :KSIK 1hxn 322 :GSPP T0547 372 :SN 1hxn 327 :IS Number of specific fragments extracted= 3 number of extra gaps= 2 total=97949 # 1i12A.365.23 read from T0547.t06.many.frag # found chain 1i12A in training set Warning: unaligning (T0547)K370 (1i12A)T28 because Y (epsilon') conformation "forbidden" or filtered. T0547 365 :LYKSI 1i12A 23 :TLKVL T0547 371 :PSN 1i12A 29 :TVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=97951 # 1e42A.365.160 read from T0547.t06.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)K370 (1e42A)P845 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKSI 1e42A 840 :TWKDI T0547 371 :PSN 1e42A 846 :NEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=97953 # 1xtoA.365.65 read from T0547.t06.many.frag # found chain 1xtoA in template set Warning: unaligning (T0547)K370 (1xtoA)Q71 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1xtoA)A73 because L (left) conformation "forbidden" or filtered. T0547 365 :LYKSI 1xtoA 66 :AFAPM T0547 371 :P 1xtoA 72 :P T0547 373 :N 1xtoA 74 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=97956 # 1wdpA.365.475 read from T0547.t06.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)K370 (1wdpA)L481 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKSI 1wdpA 476 :ATKPT T0547 371 :PSN 1wdpA 482 :PFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=97958 # 2anxA.365.118 read from T0547.t06.many.frag # found chain 2anxA in training set T0547 365 :LYKSIKPSN 2anxA 119 :AFLLWKKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=97959 # 1rp4A.365.270 read from T0547.t06.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)P371 (1rp4A)T315 because Y (epsilon') conformation "forbidden" or filtered. T0547 365 :LYKSIK 1rp4A 309 :VISQLD T0547 372 :SN 1rp4A 316 :KI Number of specific fragments extracted= 2 number of extra gaps= 1 total=97961 # 1sjwA.365.13 read from T0547.t06.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)R19 Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE at template residue (1sjwA)R19 Warning: unaligning (T0547)P371 (1sjwA)T20 because G (3-10) conformation "forbidden" or filtered. T0547 365 :LYKS 1sjwA 14 :AFNT T0547 372 :SN 1sjwA 21 :DD Number of specific fragments extracted= 2 number of extra gaps= 1 total=97963 # 1bco.365.223 read from T0547.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0547)K370 (1bco)I476 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1bco)V477 because E (beta_S) conformation "forbidden" or filtered. T0547 365 :LYKSI 1bco 471 :EYART T0547 372 :SN 1bco 478 :RK Number of specific fragments extracted= 2 number of extra gaps= 1 total=97965 # 1kzfA.365.104 read from T0547.t06.many.frag # found chain 1kzfA in training set T0547 365 :LYKSIKPSN 1kzfA 85 :CFSDVTLPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=97966 # 1tu1A.365.134 read from T0547.t06.many.frag # found chain 1tu1A in template set Warning: unaligning (T0547)K370 (1tu1A)V138 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1tu1A)R140 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKSI 1tu1A 133 :AMQTL T0547 371 :P 1tu1A 139 :P T0547 373 :N 1tu1A 141 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=97969 # 1xv5A.365.153 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)N373 (1xv5A)L1161 because G (3-10) conformation "forbidden" or filtered. T0547 365 :LYKSIKPS 1xv5A 1153 :EWYPETVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=97970 # 1g5tA.365.169 read from T0547.t06.many.frag # found chain 1g5tA in training set Warning: unaligning (T0547)P371 (1g5tA)E176 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1g5tA)R178 because P (beta_P) conformation "forbidden" or filtered. T0547 365 :LYKSIK 1g5tA 170 :LADTVS T0547 372 :S 1g5tA 177 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=97972 # 1kyfA.365.147 read from T0547.t06.many.frag # found chain 1kyfA in training set T0547 365 :LYKSIKPSN 1kyfA 839 :RWKQLSNPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=97973 # 1o9iA.366.195 read from T0547.t06.many.frag # found chain 1o9iA in training set T0547 366 :YKSIKPSNA 1o9iA 196 :YGIIVPGDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=97974 # 1w9zA.366.214 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)A374 (1w9zA)R223 because P (beta_P) conformation "forbidden" or filtered. T0547 366 :YKSIKPSN 1w9zA 215 :VNSLVPGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=97975 # 1m7gA.366.119 read from T0547.t06.many.frag # found chain 1m7gA in training set T0547 366 :YKSIKPSNA 1m7gA 120 :HEVATPGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97976 # 1uzbA.366.345 read from T0547.t06.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)P371 (1uzbA)V351 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1uzbA)G352 because Y (epsilon') conformation "forbidden" or filtered. T0547 366 :YKSIK 1uzbA 346 :AERLS T0547 373 :NA 1uzbA 353 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=97978 # 1pc6A.366.20 read from T0547.t06.many.frag # found chain 1pc6A in template set T0547 366 :YKSIKPSNA 1pc6A 21 :VQQILPDPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=97979 # 1ckmA.366.171 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)A374 (1ckmA)E180 because G (3-10) conformation "forbidden" or filtered. T0547 366 :YKSIKPSN 1ckmA 172 :LKEFKNVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=97980 # 1hz4A.366.237 read from T0547.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0547)P371 (1hz4A)K241 because D (zeta) conformation "forbidden" or filtered. T0547 366 :YKSIK 1hz4A 236 :LRHTA T0547 372 :SNA 1hz4A 242 :PEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=97982 # 2a25A.366.62 read from T0547.t06.many.frag # found chain 2a25A in template set Warning: unaligning (T0547)P371 (2a25A)T157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (2a25A)G160 because Y (epsilon') conformation "forbidden" or filtered. T0547 366 :YKSIK 2a25A 152 :HKSIT T0547 372 :SN 2a25A 158 :LQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=97984 # 1no7A.366.388 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P371 (1no7A)V844 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1no7A)P845 because P (beta_P) conformation "forbidden" or filtered. T0547 366 :YKSIK 1no7A 839 :LQNMV T0547 373 :NA 1no7A 846 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=97986 # 1t9iA.366.61 read from T0547.t06.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)S368 (1t9iA)V64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I369 (1t9iA)G65 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 (1t9iA)Y66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1t9iA)V67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1t9iA)R70 because D (zeta) conformation "forbidden" or filtered. T0547 366 :YK 1t9iA 62 :IG T0547 372 :SN 1t9iA 68 :RD Number of specific fragments extracted= 2 number of extra gaps= 2 total=97988 # 1scfA.366.150 read from T0547.t06.many.frag # found chain 1scfA in template set T0547 366 :YKSIKPSNA 1scfA 126 :FKDFVVASE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97989 # 1e42A.366.161 read from T0547.t06.many.frag # found chain 1e42A in template set T0547 366 :YKSIKPSNA 1e42A 841 :WKDIPNENE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97990 # 1hxn.366.105 read from T0547.t06.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)P371 (1hxn)V326 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1hxn)L329 because P (beta_P) conformation "forbidden" or filtered. T0547 366 :YKSIK 1hxn 321 :LGSPP T0547 372 :SN 1hxn 327 :IS Number of specific fragments extracted= 2 number of extra gaps= 2 total=97992 # 1up8A.366.303 read from T0547.t06.many.frag # found chain 1up8A in template set Warning: unaligning (T0547)K367 (1up8A)D304 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S368 (1up8A)A305 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1up8A)F308 because G (3-10) conformation "forbidden" or filtered. T0547 366 :Y 1up8A 303 :Q T0547 369 :IK 1up8A 306 :AD T0547 372 :SNA 1up8A 309 :RGF Number of specific fragments extracted= 3 number of extra gaps= 2 total=97995 # 2bw3A.366.451 read from T0547.t06.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)P371 (2bw3A)V532 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (2bw3A)L534 because P (beta_P) conformation "forbidden" or filtered. T0547 366 :YKSIK 2bw3A 527 :YRKEI T0547 372 :S 2bw3A 533 :I T0547 374 :A 2bw3A 535 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=97998 # 1wdpA.366.476 read from T0547.t06.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)K367 (1wdpA)K478 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1wdpA)F483 because P (beta_P) conformation "forbidden" or filtered. T0547 366 :Y 1wdpA 477 :T T0547 368 :SIKP 1wdpA 479 :PTLP T0547 373 :NA 1wdpA 484 :PW Number of specific fragments extracted= 3 number of extra gaps= 2 total=98001 # 1h7sA.366.238 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)S368 (1h7sA)P241 because P (beta_P) conformation "forbidden" or filtered. T0547 366 :YK 1h7sA 239 :LI T0547 369 :IKPSNA 1h7sA 242 :FVQLPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=98003 # 1rloA.366.129 read from T0547.t06.many.frag # found chain 1rloA in template set T0547 366 :YKSIKPSNA 1rloA 130 :YHRLKPVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98004 # 2fokA.366.397 read from T0547.t06.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 366 :YKSIK 2fokA 398 :RHKLK T0547 372 :SNA 2fokA 404 :VPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=98006 # 1i12A.366.24 read from T0547.t06.many.frag # found chain 1i12A in training set Warning: unaligning (T0547)K370 (1i12A)T28 because Y (epsilon') conformation "forbidden" or filtered. T0547 366 :YKSI 1i12A 24 :LKVL T0547 371 :PSNA 1i12A 29 :TVGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=98008 # 1xtoA.366.66 read from T0547.t06.many.frag # found chain 1xtoA in template set Warning: unaligning (T0547)S372 (1xtoA)A73 because L (left) conformation "forbidden" or filtered. T0547 366 :YKSIKP 1xtoA 67 :FAPMQP T0547 373 :NA 1xtoA 74 :RA Number of specific fragments extracted= 2 number of extra gaps= 1 total=98010 # 2bj0A.366.13 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)P371 (2bj0A)L19 because E (beta_S) conformation "forbidden" or filtered. T0547 366 :YKSIK 2bj0A 14 :SDVIP T0547 372 :SNA 2bj0A 20 :SNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=98012 # 1sjwA.366.14 read from T0547.t06.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)R19 Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE at template residue (1sjwA)R19 Warning: unaligning (T0547)P371 (1sjwA)T20 because G (3-10) conformation "forbidden" or filtered. T0547 366 :YKS 1sjwA 15 :FNT T0547 372 :SNA 1sjwA 21 :DDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=98014 # 1ecrA.366.73 read from T0547.t06.many.frag # found chain 1ecrA in template set T0547 366 :YKSIKPSNA 1ecrA 74 :FRHLFIQQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=98015 # 2anxA.366.119 read from T0547.t06.many.frag # found chain 2anxA in training set T0547 366 :YKSIKPSNA 2anxA 120 :FLLWKKAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98016 # 1kzfA.366.105 read from T0547.t06.many.frag # found chain 1kzfA in training set T0547 366 :YKSIKPSNA 1kzfA 86 :FSDVTLPAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=98017 # 1t0bA.366.220 read from T0547.t06.many.frag # found chain 1t0bA in training set Warning: unaligning (T0547)I369 (1t0bA)A221 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE in next template residue (1t0bA)R226 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE at template residue (1t0bA)R226 T0547 366 :YKS 1t0bA 218 :VRW T0547 370 :KPS 1t0bA 222 :APV Number of specific fragments extracted= 2 number of extra gaps= 2 total=98019 # 1q74A.366.193 read from T0547.t06.many.frag # found chain 1q74A in training set Warning: unaligning (T0547)K370 (1q74A)V198 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1q74A)L202 because E (beta_S) conformation "forbidden" or filtered. T0547 366 :YKSI 1q74A 194 :ARAL T0547 371 :PSN 1q74A 199 :PDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=98021 # 1rp4A.366.271 read from T0547.t06.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)S368 (1rp4A)Q312 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I369 (1rp4A)L313 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1rp4A)T315 because Y (epsilon') conformation "forbidden" or filtered. T0547 366 :YK 1rp4A 310 :IS T0547 370 :K 1rp4A 314 :D T0547 372 :SNA 1rp4A 316 :KIF Number of specific fragments extracted= 3 number of extra gaps= 2 total=98024 # 1y1oA.366.178 read from T0547.t06.many.frag # found chain 1y1oA in template set Warning: unaligning (T0547)P371 (1y1oA)L181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1y1oA)G182 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1y1oA)Q184 because L (left) conformation "forbidden" or filtered. T0547 366 :YKSIK 1y1oA 176 :GHSIP T0547 373 :N 1y1oA 183 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=98026 # 1o9iA.367.196 read from T0547.t06.many.frag # found chain 1o9iA in training set T0547 367 :KSIKPSNAL 1o9iA 197 :GIIVPGDMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98027 # 1w9zA.367.215 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)N373 (1w9zA)E222 because G (3-10) conformation "forbidden" or filtered. T0547 367 :KSIKPS 1w9zA 216 :NSLVPG T0547 374 :AL 1w9zA 223 :RT Number of specific fragments extracted= 2 number of extra gaps= 1 total=98029 # 1uzbA.367.346 read from T0547.t06.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)P371 (1uzbA)V351 because E (beta_S) conformation "forbidden" or filtered. T0547 367 :KSIK 1uzbA 347 :ERLS T0547 372 :SNAL 1uzbA 352 :GPAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=98031 # 1m7gA.367.120 read from T0547.t06.many.frag # found chain 1m7gA in training set Warning: unaligning (T0547)S368 (1m7gA)V122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1m7gA)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1m7gA)E128 because G (3-10) conformation "forbidden" or filtered. T0547 367 :K 1m7gA 121 :E T0547 369 :IKP 1m7gA 123 :ATP T0547 373 :N 1m7gA 127 :E T0547 375 :L 1m7gA 129 :T Number of specific fragments extracted= 4 number of extra gaps= 3 total=98035 # 1pc6A.367.21 read from T0547.t06.many.frag # found chain 1pc6A in template set T0547 367 :KSIKPSNAL 1pc6A 22 :QQILPDPTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98036 # 1ckmA.367.172 read from T0547.t06.many.frag # found chain 1ckmA in template set T0547 367 :KSIKPSNAL 1ckmA 173 :KEFKNVPED Number of specific fragments extracted= 1 number of extra gaps= 0 total=98037 # 2a25A.367.63 read from T0547.t06.many.frag # found chain 2a25A in template set Warning: unaligning (T0547)P371 (2a25A)T157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (2a25A)Q159 because P (beta_P) conformation "forbidden" or filtered. T0547 367 :KSIK 2a25A 153 :KSIT T0547 372 :S 2a25A 158 :L T0547 374 :AL 2a25A 160 :GE Number of specific fragments extracted= 3 number of extra gaps= 2 total=98040 # 1hz4A.367.238 read from T0547.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0547)P371 (1hz4A)K241 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L375 (1hz4A)A245 because L (left) conformation "forbidden" or filtered. T0547 367 :KSIK 1hz4A 237 :RHTA T0547 372 :SNA 1hz4A 242 :PEF Number of specific fragments extracted= 2 number of extra gaps= 2 total=98042 # 1t9iA.367.62 read from T0547.t06.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)S368 (1t9iA)V64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1t9iA)V67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1t9iA)R70 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L375 (1t9iA)G71 because S (epsilon) conformation "forbidden" or filtered. T0547 367 :K 1t9iA 63 :G T0547 369 :IK 1t9iA 65 :GY T0547 372 :SN 1t9iA 68 :RD Number of specific fragments extracted= 3 number of extra gaps= 3 total=98045 # 1scfA.367.151 read from T0547.t06.many.frag # found chain 1scfA in template set Warning: unaligning (T0547)A374 (1scfA)E134 because G (3-10) conformation "forbidden" or filtered. T0547 367 :KSIKPSN 1scfA 127 :KDFVVAS T0547 375 :L 1scfA 135 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=98047 # 1no7A.367.389 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P371 (1no7A)V844 because D (zeta) conformation "forbidden" or filtered. T0547 367 :KSIK 1no7A 840 :QNMV T0547 372 :SNAL 1no7A 845 :PEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=98049 # 1hxn.367.106 read from T0547.t06.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)P371 (1hxn)V326 because G (3-10) conformation "forbidden" or filtered. T0547 367 :KSIK 1hxn 322 :GSPP T0547 372 :SNAL 1hxn 327 :ISLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=98051 # 1up8A.367.304 read from T0547.t06.many.frag # found chain 1up8A in template set Warning: unaligning (T0547)S368 (1up8A)A305 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1up8A)F308 because G (3-10) conformation "forbidden" or filtered. T0547 367 :K 1up8A 304 :D T0547 369 :IK 1up8A 306 :AD T0547 372 :SNAL 1up8A 309 :RGFE Number of specific fragments extracted= 3 number of extra gaps= 2 total=98054 # 1h7sA.367.239 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)K370 (1h7sA)V243 because D (zeta) conformation "forbidden" or filtered. T0547 367 :KSI 1h7sA 240 :IPF T0547 371 :PSNAL 1h7sA 244 :QLPPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=98056 # 2bj0A.367.14 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)P371 (2bj0A)L19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (2bj0A)N21 because S (epsilon) conformation "forbidden" or filtered. T0547 367 :KSIK 2bj0A 15 :DVIP T0547 372 :S 2bj0A 20 :S T0547 374 :AL 2bj0A 22 :NT Number of specific fragments extracted= 3 number of extra gaps= 2 total=98059 # 1sjwA.367.15 read from T0547.t06.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)R19 Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE at template residue (1sjwA)R19 Warning: unaligning (T0547)P371 (1sjwA)T20 because G (3-10) conformation "forbidden" or filtered. T0547 367 :KS 1sjwA 16 :NT T0547 372 :SNAL 1sjwA 21 :DDVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=98061 # 1wdpA.367.477 read from T0547.t06.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)N373 (1wdpA)P484 because P (beta_P) conformation "forbidden" or filtered. T0547 367 :KSIKPS 1wdpA 478 :KPTLPF T0547 374 :AL 1wdpA 485 :WL Number of specific fragments extracted= 2 number of extra gaps= 1 total=98063 # 1e42A.367.162 read from T0547.t06.many.frag # found chain 1e42A in template set T0547 367 :KSIKPSNAL 1e42A 842 :KDIPNENEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98064 # 1t0bA.367.221 read from T0547.t06.many.frag # found chain 1t0bA in training set Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE in next template residue (1t0bA)R226 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE at template residue (1t0bA)R226 T0547 367 :KSIKPS 1t0bA 219 :RWAAPV T0547 375 :L 1t0bA 227 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=98066 # 1kzfA.367.106 read from T0547.t06.many.frag # found chain 1kzfA in training set T0547 367 :KSIKPSNAL 1kzfA 87 :SDVTLPAYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=98067 # 2bw3A.367.452 read from T0547.t06.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)S368 (2bw3A)K529 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2bw3A)V532 because E (beta_S) conformation "forbidden" or filtered. T0547 367 :K 2bw3A 528 :R T0547 369 :IK 2bw3A 530 :EI T0547 372 :SNAL 2bw3A 533 :ILSE Number of specific fragments extracted= 3 number of extra gaps= 2 total=98070 # 1xtoA.367.67 read from T0547.t06.many.frag # found chain 1xtoA in template set Warning: unaligning (T0547)S372 (1xtoA)A73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1xtoA)A75 because Y (epsilon') conformation "forbidden" or filtered. T0547 367 :KSIKP 1xtoA 68 :APMQP T0547 373 :N 1xtoA 74 :R T0547 375 :L 1xtoA 76 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=98073 # 1i12A.367.25 read from T0547.t06.many.frag # found chain 1i12A in training set Warning: unaligning (T0547)A374 (1i12A)T32 because P (beta_P) conformation "forbidden" or filtered. T0547 367 :KSIKPSN 1i12A 25 :KVLTTVG T0547 375 :L 1i12A 33 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=98075 # 1vqoT.367.12 read from T0547.t06.many.frag # found chain 1vqoT in template set T0547 367 :KSIKPSNAL 1vqoT 12 :RRAPLHERH Number of specific fragments extracted= 1 number of extra gaps= 0 total=98076 # 1rp4A.367.272 read from T0547.t06.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)P371 (1rp4A)T315 because Y (epsilon') conformation "forbidden" or filtered. T0547 367 :KSIK 1rp4A 311 :SQLD T0547 372 :SNAL 1rp4A 316 :KIFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=98078 # 2fokA.367.398 read from T0547.t06.many.frag # found chain 2fokA in template set Warning: unaligning (T0547)P371 (2fokA)Y403 because G (3-10) conformation "forbidden" or filtered. T0547 367 :KSIK 2fokA 399 :HKLK T0547 372 :SNAL 2fokA 404 :VPHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=98080 # 2anxA.367.120 read from T0547.t06.many.frag # found chain 2anxA in training set Warning: unaligning (T0547)N373 (2anxA)G127 because S (epsilon) conformation "forbidden" or filtered. T0547 367 :KSIKPS 2anxA 121 :LLWKKA T0547 374 :AL 2anxA 128 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=98082 # 1rloA.367.130 read from T0547.t06.many.frag # found chain 1rloA in template set T0547 367 :KSIKPSNAL 1rloA 131 :HRLKPVKDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=98083 # 1q74A.367.194 read from T0547.t06.many.frag # found chain 1q74A in training set Warning: unaligning (T0547)K370 (1q74A)V198 because E (beta_S) conformation "forbidden" or filtered. T0547 367 :KSI 1q74A 195 :RAL T0547 371 :PSNAL 1q74A 199 :PDDLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=98085 # 1vk5A.367.49 read from T0547.t06.many.frag # found chain 1vk5A in training set T0547 367 :KSIKPSNAL 1vk5A 50 :KQVPIPTNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=98086 # 1uzbA.368.347 read from T0547.t06.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)P371 (1uzbA)V351 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1uzbA)G352 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1uzbA)P353 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SIK 1uzbA 348 :RLS T0547 374 :ALE 1uzbA 354 :AEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=98088 # 1o9iA.368.197 read from T0547.t06.many.frag # found chain 1o9iA in training set T0547 368 :SIKPSNALE 1o9iA 198 :IIVPGDMKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98089 # 1m7gA.368.121 read from T0547.t06.many.frag # found chain 1m7gA in training set Warning: unaligning (T0547)E376 (1m7gA)G130 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SIKPSNAL 1m7gA 122 :VATPGEET Number of specific fragments extracted= 1 number of extra gaps= 1 total=98090 # 1pc6A.368.22 read from T0547.t06.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)S368 (1pc6A)Q23 because G (3-10) conformation "forbidden" or filtered. T0547 369 :IKPSNALE 1pc6A 24 :ILPDPTKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=98091 # 1w9zA.368.216 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)K370 (1w9zA)V219 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1w9zA)R223 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SI 1w9zA 217 :SL T0547 371 :PSN 1w9zA 220 :PGE T0547 375 :LE 1w9zA 224 :TR Number of specific fragments extracted= 3 number of extra gaps= 2 total=98094 # 1ckmA.368.173 read from T0547.t06.many.frag # found chain 1ckmA in template set T0547 368 :SIKPSNALE 1ckmA 174 :EFKNVPEDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=98095 # 2a25A.368.64 read from T0547.t06.many.frag # found chain 2a25A in template set Warning: unaligning (T0547)P371 (2a25A)T157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (2a25A)G160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (2a25A)D162 because D (zeta) conformation "forbidden" or filtered. T0547 368 :SIK 2a25A 154 :SIT T0547 372 :SN 2a25A 158 :LQ T0547 375 :L 2a25A 161 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=98098 # 1hz4A.368.239 read from T0547.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0547)K370 (1hz4A)A240 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1hz4A)K241 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1hz4A)P242 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L375 (1hz4A)A245 because L (left) conformation "forbidden" or filtered. T0547 368 :SI 1hz4A 238 :HT T0547 373 :NA 1hz4A 243 :EF T0547 376 :E 1hz4A 246 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=98101 # 1t9iA.368.63 read from T0547.t06.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)S368 (1t9iA)V64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I369 (1t9iA)G65 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1t9iA)V67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1t9iA)R70 because D (zeta) conformation "forbidden" or filtered. T0547 370 :K 1t9iA 66 :Y T0547 372 :SN 1t9iA 68 :RD T0547 375 :LE 1t9iA 71 :GS Number of specific fragments extracted= 3 number of extra gaps= 3 total=98104 # 1no7A.368.390 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P371 (1no7A)V844 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1no7A)I847 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SIK 1no7A 841 :NMV T0547 372 :SN 1no7A 845 :PE T0547 375 :LE 1no7A 848 :AP Number of specific fragments extracted= 3 number of extra gaps= 2 total=98107 # 1scfA.368.152 read from T0547.t06.many.frag # found chain 1scfA in template set T0547 368 :SIKPSNALE 1scfA 128 :DFVVASETS Number of specific fragments extracted= 1 number of extra gaps= 0 total=98108 # 1hxn.368.107 read from T0547.t06.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)P371 (1hxn)V326 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1hxn)A331 because Y (epsilon') conformation "forbidden" or filtered. T0547 368 :SIK 1hxn 323 :SPP T0547 372 :SNAL 1hxn 327 :ISLE Number of specific fragments extracted= 2 number of extra gaps= 2 total=98110 # 1h7sA.368.240 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)K370 (1h7sA)V243 because D (zeta) conformation "forbidden" or filtered. T0547 368 :SI 1h7sA 241 :PF T0547 371 :PSNALE 1h7sA 244 :QLPPSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=98112 # 1t0bA.368.222 read from T0547.t06.many.frag # found chain 1t0bA in training set Warning: unaligning (T0547)K370 (1t0bA)A222 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE in next template residue (1t0bA)R226 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE at template residue (1t0bA)R226 Warning: unaligning (T0547)L375 (1t0bA)G227 because S (epsilon) conformation "forbidden" or filtered. T0547 368 :SI 1t0bA 220 :WA T0547 371 :PS 1t0bA 223 :PV T0547 376 :E 1t0bA 228 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=98115 # 1vqoT.368.13 read from T0547.t06.many.frag # found chain 1vqoT in template set Warning: unaligning (T0547)S368 (1vqoT)R13 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K370 (1vqoT)P15 because P (beta_P) conformation "forbidden" or filtered. T0547 369 :I 1vqoT 14 :A T0547 371 :PSNALE 1vqoT 16 :LHERHK Number of specific fragments extracted= 2 number of extra gaps= 2 total=98117 # 1kzfA.368.107 read from T0547.t06.many.frag # found chain 1kzfA in training set T0547 368 :SIKPSNALE 1kzfA 88 :DVTLPAYGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=98118 # 1up8A.368.305 read from T0547.t06.many.frag # found chain 1up8A in template set Warning: unaligning (T0547)P371 (1up8A)F308 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1up8A)S313 because E (beta_S) conformation "forbidden" or filtered. T0547 368 :SIK 1up8A 305 :AAD T0547 372 :SNAL 1up8A 309 :RGFE Number of specific fragments extracted= 2 number of extra gaps= 2 total=98120 # 2bj0A.368.15 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)P371 (2bj0A)L19 because E (beta_S) conformation "forbidden" or filtered. T0547 368 :SIK 2bj0A 16 :VIP T0547 372 :SNALE 2bj0A 20 :SNNTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=98122 # 1bco.368.226 read from T0547.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0547)P371 (1bco)V477 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1bco)P480 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SIK 1bco 474 :RTI T0547 372 :SN 1bco 478 :RK T0547 375 :LE 1bco 481 :TE Number of specific fragments extracted= 3 number of extra gaps= 2 total=98125 # 1k8wA.368.154 read from T0547.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)I369 (1k8wA)G143 because L (left) conformation "forbidden" or filtered. T0547 368 :S 1k8wA 142 :Q T0547 370 :KPSNALE 1k8wA 144 :IEVPREA Number of specific fragments extracted= 2 number of extra gaps= 1 total=98127 # 1sjwA.368.16 read from T0547.t06.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)I369 because of BadResidue code BAD_PEPTIDE in next template residue (1sjwA)R19 Warning: unaligning (T0547)K370 because of BadResidue code BAD_PEPTIDE at template residue (1sjwA)R19 Warning: unaligning (T0547)P371 (1sjwA)T20 because G (3-10) conformation "forbidden" or filtered. T0547 368 :S 1sjwA 17 :T T0547 372 :SNALE 1sjwA 21 :DDVDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=98129 # 2bw3A.368.453 read from T0547.t06.many.frag # found chain 2bw3A in template set Warning: unaligning (T0547)P371 (2bw3A)V532 because E (beta_S) conformation "forbidden" or filtered. T0547 368 :SIK 2bw3A 529 :KEI T0547 372 :SNALE 2bw3A 533 :ILSED Number of specific fragments extracted= 2 number of extra gaps= 1 total=98131 # 1wdpA.368.478 read from T0547.t06.many.frag # found chain 1wdpA in training set T0547 368 :SIKPSNALE 1wdpA 479 :PTLPFPWLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=98132 # 1xtoA.368.68 read from T0547.t06.many.frag # found chain 1xtoA in template set Warning: unaligning (T0547)K370 (1xtoA)Q71 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1xtoA)R77 because L (left) conformation "forbidden" or filtered. T0547 368 :SI 1xtoA 69 :PM T0547 371 :PSNAL 1xtoA 72 :PARAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=98134 # 2yhx.368.411 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)P371 (2yhx)Q416 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X419 Warning: unaligning (T0547)L375 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X420 T0547 368 :SIK 2yhx 413 :GWP T0547 372 :SN 2yhx 417 :SA T0547 376 :E 2yhx 421 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=98137 # 1br9.368.74 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)S372 (1br9)G79 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1br9)G80 because T (delta_L) conformation "forbidden" or filtered. T0547 368 :SIKP 1br9 75 :SLDV T0547 374 :ALE 1br9 81 :KKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=98139 # 1i12A.368.26 read from T0547.t06.many.frag # found chain 1i12A in training set Warning: unaligning (T0547)K370 (1i12A)T28 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1i12A)G31 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1i12A)T34 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SI 1i12A 26 :VL T0547 371 :PS 1i12A 29 :TV T0547 374 :AL 1i12A 32 :TI Number of specific fragments extracted= 3 number of extra gaps= 3 total=98142 # 1su0B.368.19 read from T0547.t06.many.frag # found chain 1su0B in template set Warning: unaligning (T0547)S368 (1su0B)R20 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1su0B)H23 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1su0B)G25 because S (epsilon) conformation "forbidden" or filtered. T0547 369 :IK 1su0B 21 :PH T0547 372 :S 1su0B 24 :H T0547 374 :ALE 1su0B 26 :QLD Number of specific fragments extracted= 3 number of extra gaps= 3 total=98145 # 1rp4A.368.273 read from T0547.t06.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)P371 (1rp4A)T315 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1rp4A)E320 because P (beta_P) conformation "forbidden" or filtered. T0547 368 :SIK 1rp4A 312 :QLD T0547 372 :SNAL 1rp4A 316 :KIFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=98147 # 1vk5A.368.50 read from T0547.t06.many.frag # found chain 1vk5A in training set T0547 368 :SIKPSNALE 1vk5A 51 :QVPIPTNRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=98148 # 1ckmA.369.174 read from T0547.t06.many.frag # found chain 1ckmA in template set T0547 369 :IKPSNALEY 1ckmA 175 :FKNVPEDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98149 # 1m7gA.369.122 read from T0547.t06.many.frag # found chain 1m7gA in training set Warning: unaligning (T0547)S372 (1m7gA)G126 because T (delta_L) conformation "forbidden" or filtered. T0547 369 :IKP 1m7gA 123 :ATP T0547 373 :NALEY 1m7gA 127 :EETGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=98151 # 1pc6A.369.23 read from T0547.t06.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)S372 (1pc6A)D27 because D (zeta) conformation "forbidden" or filtered. T0547 369 :IKP 1pc6A 24 :ILP T0547 373 :NALEY 1pc6A 28 :PTKPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=98153 # 1w9zA.369.217 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)A374 (1w9zA)R223 because P (beta_P) conformation "forbidden" or filtered. T0547 369 :IKPSN 1w9zA 218 :LVPGE T0547 375 :LEY 1w9zA 224 :TRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=98155 # 1kzfA.369.108 read from T0547.t06.many.frag # found chain 1kzfA in training set Warning: unaligning (T0547)K370 (1kzfA)T90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L375 (1kzfA)G95 because Y (epsilon') conformation "forbidden" or filtered. T0547 369 :I 1kzfA 89 :V T0547 371 :PSNA 1kzfA 91 :LPAY T0547 376 :EY 1kzfA 96 :TE Number of specific fragments extracted= 3 number of extra gaps= 2 total=98158 # 1uzbA.369.348 read from T0547.t06.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)P371 (1uzbA)V351 because E (beta_S) conformation "forbidden" or filtered. T0547 369 :IK 1uzbA 349 :LS T0547 372 :SNALEY 1uzbA 352 :GPAEEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=98160 # 1hz4A.369.240 read from T0547.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0547)P371 (1hz4A)K241 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)L375 (1hz4A)A245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1hz4A)N246 because L (left) conformation "forbidden" or filtered. T0547 369 :IK 1hz4A 239 :TA T0547 372 :SNA 1hz4A 242 :PEF T0547 377 :Y 1hz4A 247 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=98163 # 1o9iA.369.198 read from T0547.t06.many.frag # found chain 1o9iA in training set T0547 369 :IKPSNALEY 1o9iA 199 :IVPGDMKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=98164 # 1h7sA.369.241 read from T0547.t06.many.frag # found chain 1h7sA in template set T0547 369 :IKPSNALEY 1h7sA 242 :FVQLPPSDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=98165 # 2a25A.369.65 read from T0547.t06.many.frag # found chain 2a25A in template set Warning: unaligning (T0547)P371 (2a25A)T157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (2a25A)G160 because Y (epsilon') conformation "forbidden" or filtered. T0547 369 :IK 2a25A 155 :IT T0547 372 :SN 2a25A 158 :LQ T0547 375 :LEY 2a25A 161 :EDI Number of specific fragments extracted= 3 number of extra gaps= 2 total=98168 # 1k8wA.369.155 read from T0547.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)K370 (1k8wA)I144 because E (beta_S) conformation "forbidden" or filtered. T0547 369 :I 1k8wA 143 :G T0547 371 :PSNALEY 1k8wA 145 :EVPREAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=98170 # 1eerA.369.124 read from T0547.t06.many.frag # found chain 1eerA in template set Warning: unaligning (T0547)A374 (1eerA)L130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L375 (1eerA)R131 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1eerA)T132 because L (left) conformation "forbidden" or filtered. T0547 369 :IKPSN 1eerA 125 :ASAAP T0547 377 :Y 1eerA 133 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=98172 # 2yhx.369.412 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)P371 (2yhx)Q416 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (2yhx)A418 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X419 Warning: unaligning (T0547)L375 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X420 T0547 369 :IK 2yhx 414 :WP T0547 372 :S 2yhx 417 :S T0547 376 :EY 2yhx 421 :SK Number of specific fragments extracted= 3 number of extra gaps= 2 total=98175 # 1hxn.369.108 read from T0547.t06.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)P371 (1hxn)V326 because G (3-10) conformation "forbidden" or filtered. T0547 369 :IK 1hxn 324 :PP T0547 372 :SNALEY 1hxn 327 :ISLEAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=98177 # 1t9iA.369.64 read from T0547.t06.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)K370 (1t9iA)Y66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1t9iA)V67 because E (beta_S) conformation "forbidden" or filtered. T0547 369 :I 1t9iA 65 :G T0547 372 :SNALEY 1t9iA 68 :RDRGSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=98179 # 1xtoA.369.69 read from T0547.t06.many.frag # found chain 1xtoA in template set Warning: unaligning (T0547)S372 (1xtoA)A73 because L (left) conformation "forbidden" or filtered. T0547 369 :IKP 1xtoA 70 :MQP T0547 373 :NALEY 1xtoA 74 :RALRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=98181 # 1vk5A.369.51 read from T0547.t06.many.frag # found chain 1vk5A in training set T0547 369 :IKPSNALEY 1vk5A 52 :VPIPTNRGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=98182 # 1t0bA.369.223 read from T0547.t06.many.frag # found chain 1t0bA in training set Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE in next template residue (1t0bA)R226 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE at template residue (1t0bA)R226 T0547 369 :IKPS 1t0bA 221 :AAPV T0547 375 :LEY 1t0bA 227 :GEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=98184 # 1scfA.369.153 read from T0547.t06.many.frag # found chain 1scfA in template set T0547 369 :IKPSNALEY 1scfA 129 :FVVASETSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98185 # 1br9.369.75 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE in next template residue (1br9)L85 T0547 369 :IKPSNALE 1br9 76 :LDVGGKKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=98186 # 2bj0A.369.16 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)P371 (2bj0A)L19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (2bj0A)P24 because P (beta_P) conformation "forbidden" or filtered. T0547 369 :IK 2bj0A 17 :IP T0547 372 :SNAL 2bj0A 20 :SNNT T0547 377 :Y 2bj0A 25 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=98189 # 1no7A.369.391 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)K370 (1no7A)V843 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1no7A)V844 because D (zeta) conformation "forbidden" or filtered. T0547 369 :I 1no7A 842 :M T0547 372 :SNALEY 1no7A 845 :PEIAPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=98191 # 1vqoT.369.14 read from T0547.t06.many.frag # found chain 1vqoT in template set Warning: unaligning (T0547)A374 (1vqoT)R19 because G (3-10) conformation "forbidden" or filtered. T0547 369 :IKPSN 1vqoT 14 :APLHE T0547 375 :LEY 1vqoT 20 :HKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=98193 # 1e42A.369.164 read from T0547.t06.many.frag # found chain 1e42A in template set T0547 369 :IKPSNALEY 1e42A 844 :IPNENELQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=98194 # 1bco.369.227 read from T0547.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0547)K370 (1bco)I476 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1bco)V477 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1bco)K479 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1bco)P480 because P (beta_P) conformation "forbidden" or filtered. T0547 369 :I 1bco 475 :T T0547 372 :S 1bco 478 :R T0547 375 :LEY 1bco 481 :TEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=98197 # 1wdpA.369.479 read from T0547.t06.many.frag # found chain 1wdpA in training set Warning: unaligning (T0547)N373 (1wdpA)P484 because P (beta_P) conformation "forbidden" or filtered. T0547 369 :IKPS 1wdpA 480 :TLPF T0547 374 :ALEY 1wdpA 485 :WLPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=98199 # 2d2mC.369.18 read from T0547.t06.many.frag # found chain 2d2mC in template set Warning: unaligning (T0547)I369 (2d2mC)A19 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2d2mC)S21 because E (beta_S) conformation "forbidden" or filtered. T0547 370 :K 2d2mC 20 :W T0547 372 :SNALEY 2d2mC 22 :AAYSDR Number of specific fragments extracted= 2 number of extra gaps= 2 total=98201 # 1fjgI.369.52 read from T0547.t06.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)K370 (1fjgI)D54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1fjgI)A55 because Y (epsilon') conformation "forbidden" or filtered. T0547 369 :I 1fjgI 53 :V T0547 372 :SNALEY 1fjgI 56 :LGRFDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=98203 # 1p0yA.369.259 read from T0547.t06.many.frag # found chain 1p0yA in template set T0547 369 :IKPSNALEY 1p0yA 304 :EPNENRHAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=98204 # 1rp4A.369.274 read from T0547.t06.many.frag # found chain 1rp4A in template set Warning: unaligning (T0547)P371 (1rp4A)T315 because Y (epsilon') conformation "forbidden" or filtered. T0547 369 :IK 1rp4A 313 :LD T0547 372 :SNALEY 1rp4A 316 :KIFNED Number of specific fragments extracted= 2 number of extra gaps= 1 total=98206 # 1ckmA.370.175 read from T0547.t06.many.frag # found chain 1ckmA in template set T0547 370 :KPSNALEYL 1ckmA 176 :KNVPEDPAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=98207 # 1m7gA.370.123 read from T0547.t06.many.frag # found chain 1m7gA in training set Warning: unaligning (T0547)S372 (1m7gA)G126 because T (delta_L) conformation "forbidden" or filtered. T0547 370 :KP 1m7gA 124 :TP T0547 373 :NALEYL 1m7gA 127 :EETGLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=98209 # 1kzfA.370.109 read from T0547.t06.many.frag # found chain 1kzfA in training set Warning: unaligning (T0547)K370 (1kzfA)T90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1kzfA)Y94 because E (beta_S) conformation "forbidden" or filtered. T0547 371 :PSN 1kzfA 91 :LPA T0547 375 :LEYL 1kzfA 95 :GTES Number of specific fragments extracted= 2 number of extra gaps= 2 total=98211 # 1pc6A.370.24 read from T0547.t06.many.frag # found chain 1pc6A in template set T0547 370 :KPSNALEYL 1pc6A 25 :LPDPTKPIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=98212 # 1eerA.370.125 read from T0547.t06.many.frag # found chain 1eerA in template set Warning: unaligning (T0547)K370 (1eerA)S126 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1eerA)A128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1eerA)T132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L378 (1eerA)T134 because Y (epsilon') conformation "forbidden" or filtered. T0547 371 :P 1eerA 127 :A T0547 373 :NAL 1eerA 129 :PLR T0547 377 :Y 1eerA 133 :I Number of specific fragments extracted= 3 number of extra gaps= 4 total=98215 # 1w9zA.370.218 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)E376 (1w9zA)R225 because P (beta_P) conformation "forbidden" or filtered. T0547 370 :KPSNAL 1w9zA 219 :VPGERT T0547 377 :YL 1w9zA 226 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=98217 # 1hz4A.370.241 read from T0547.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0547)P371 (1hz4A)K241 because D (zeta) conformation "forbidden" or filtered. T0547 370 :K 1hz4A 240 :A T0547 372 :SNALEYL 1hz4A 242 :PEFANNH Number of specific fragments extracted= 2 number of extra gaps= 1 total=98219 # 2yhx.370.413 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)P371 (2yhx)Q416 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X419 Warning: unaligning (T0547)L375 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X420 T0547 370 :K 2yhx 415 :P T0547 372 :SN 2yhx 417 :SA T0547 376 :EYL 2yhx 421 :SKP Number of specific fragments extracted= 3 number of extra gaps= 2 total=98222 # 2a25A.370.66 read from T0547.t06.many.frag # found chain 2a25A in template set Warning: unaligning (T0547)K370 (2a25A)T156 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (2a25A)T157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (2a25A)Q159 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (2a25A)G160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (2a25A)D162 because D (zeta) conformation "forbidden" or filtered. T0547 372 :S 2a25A 158 :L T0547 375 :L 2a25A 161 :E T0547 377 :YL 2a25A 163 :IV Number of specific fragments extracted= 3 number of extra gaps= 3 total=98225 # 1k8wA.370.156 read from T0547.t06.many.frag # found chain 1k8wA in template set T0547 370 :KPSNALEYL 1k8wA 144 :IEVPREARP Number of specific fragments extracted= 1 number of extra gaps= 0 total=98226 # 1hxn.370.109 read from T0547.t06.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)P371 (1hxn)V326 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1hxn)A331 because Y (epsilon') conformation "forbidden" or filtered. T0547 370 :K 1hxn 325 :P T0547 372 :SNAL 1hxn 327 :ISLE T0547 377 :YL 1hxn 332 :VD Number of specific fragments extracted= 3 number of extra gaps= 2 total=98229 # 1p0yA.370.260 read from T0547.t06.many.frag # found chain 1p0yA in template set T0547 370 :KPSNALEYL 1p0yA 305 :PNENRHAYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=98230 # 1br9.370.76 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)N373 (1br9)G80 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE in next template residue (1br9)L85 Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE at template residue (1br9)L85 T0547 370 :KPS 1br9 77 :DVG T0547 374 :ALE 1br9 81 :KKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=98232 # 1uzbA.370.349 read from T0547.t06.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)P371 (1uzbA)V351 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1uzbA)G352 because Y (epsilon') conformation "forbidden" or filtered. T0547 370 :K 1uzbA 350 :S T0547 373 :NALEYL 1uzbA 353 :PAEENP Number of specific fragments extracted= 2 number of extra gaps= 1 total=98234 # 1t9iA.370.65 read from T0547.t06.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)P371 (1t9iA)V67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1t9iA)R70 because D (zeta) conformation "forbidden" or filtered. T0547 370 :K 1t9iA 66 :Y T0547 372 :SN 1t9iA 68 :RD T0547 375 :LEYL 1t9iA 71 :GSVS Number of specific fragments extracted= 3 number of extra gaps= 2 total=98237 # 2bj0A.370.17 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)P371 (2bj0A)L19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (2bj0A)P24 because P (beta_P) conformation "forbidden" or filtered. T0547 370 :K 2bj0A 18 :P T0547 372 :SNAL 2bj0A 20 :SNNT T0547 377 :YL 2bj0A 25 :LN Number of specific fragments extracted= 3 number of extra gaps= 2 total=98240 # 1fjgI.370.53 read from T0547.t06.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)P371 (1fjgI)A55 because Y (epsilon') conformation "forbidden" or filtered. T0547 370 :K 1fjgI 54 :D T0547 372 :SNALEYL 1fjgI 56 :LGRFDAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=98242 # 1t0bA.370.224 read from T0547.t06.many.frag # found chain 1t0bA in training set Warning: unaligning (T0547)N373 because of BadResidue code BAD_PEPTIDE in next template residue (1t0bA)R226 Warning: unaligning (T0547)A374 because of BadResidue code BAD_PEPTIDE at template residue (1t0bA)R226 Warning: unaligning (T0547)L375 (1t0bA)G227 because S (epsilon) conformation "forbidden" or filtered. T0547 370 :KPS 1t0bA 222 :APV T0547 376 :EYL 1t0bA 228 :EIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=98244 # 1vk5A.370.52 read from T0547.t06.many.frag # found chain 1vk5A in training set Warning: unaligning (T0547)S372 (1vk5A)P55 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1vk5A)N57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1vk5A)G59 because P (beta_P) conformation "forbidden" or filtered. T0547 370 :KP 1vk5A 53 :PI T0547 373 :N 1vk5A 56 :T T0547 375 :L 1vk5A 58 :R T0547 377 :YL 1vk5A 60 :SL Number of specific fragments extracted= 4 number of extra gaps= 3 total=98248 # 1e42A.370.165 read from T0547.t06.many.frag # found chain 1e42A in template set T0547 370 :KPSNALEYL 1e42A 845 :PNENELQFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=98249 # 1h7sA.370.242 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)N373 (1h7sA)P246 because P (beta_P) conformation "forbidden" or filtered. T0547 370 :KPS 1h7sA 243 :VQL T0547 374 :ALEYL 1h7sA 247 :PSDSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=98251 # 1l8aA.370.716 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)K370 (1l8aA)E717 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1l8aA)T718 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y377 (1l8aA)G724 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :SNALE 1l8aA 719 :IEGSK T0547 378 :L 1l8aA 725 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=98253 # 1xtoA.370.70 read from T0547.t06.many.frag # found chain 1xtoA in template set Warning: unaligning (T0547)S372 (1xtoA)A73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1xtoA)R74 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1xtoA)R77 because L (left) conformation "forbidden" or filtered. T0547 370 :KP 1xtoA 71 :QP T0547 374 :AL 1xtoA 75 :AL T0547 377 :YL 1xtoA 78 :DT Number of specific fragments extracted= 3 number of extra gaps= 2 total=98256 # 1wpnA.370.100 read from T0547.t06.many.frag # found chain 1wpnA in training set Warning: unaligning (T0547)P371 (1wpnA)N102 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1wpnA)T105 because E (beta_S) conformation "forbidden" or filtered. T0547 370 :K 1wpnA 101 :A T0547 372 :SN 1wpnA 103 :FE T0547 375 :LEYL 1wpnA 106 :AEPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=98259 # 1vqoT.370.15 read from T0547.t06.many.frag # found chain 1vqoT in template set T0547 370 :KPSNALEYL 1vqoT 15 :PLHERHKQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=98260 # 1kpsB.370.107 read from T0547.t06.many.frag # found chain 1kpsB in template set Warning: unaligning (T0547)K370 (1kpsB)K526 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P371 (1kpsB)S527 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1kpsB)K530 because L (left) conformation "forbidden" or filtered. T0547 372 :SN 1kpsB 528 :ED T0547 375 :LEYL 1kpsB 531 :IKAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=98262 # 1na6A.370.54 read from T0547.t06.many.frag # found chain 1na6A in template set Warning: unaligning (T0547)P371 (1na6A)H56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1na6A)E59 because Y (epsilon') conformation "forbidden" or filtered. T0547 370 :K 1na6A 55 :N T0547 372 :SN 1na6A 57 :TR T0547 375 :LEYL 1na6A 60 :LNPS Number of specific fragments extracted= 3 number of extra gaps= 2 total=98265 # 2b0tA.370.359 read from T0547.t06.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)A374 (2b0tA)D364 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (2b0tA)E366 because P (beta_P) conformation "forbidden" or filtered. T0547 370 :KPSN 2b0tA 360 :WNKD T0547 375 :L 2b0tA 365 :Q T0547 377 :YL 2b0tA 367 :QD Number of specific fragments extracted= 3 number of extra gaps= 2 total=98268 # 1o9iA.370.199 read from T0547.t06.many.frag # found chain 1o9iA in training set Warning: unaligning (T0547)P371 (1o9iA)P201 because C (cis) conformation "forbidden" or filtered. T0547 370 :K 1o9iA 200 :V T0547 372 :SNALEYL 1o9iA 202 :GDMKEIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=98270 1nezG expands to /projects/compbio/data/pdb/1nez.pdb.gz 1nezG:# 1nezG.370.16 read from T0547.t06.many.frag # adding 1nezG to template set # found chain 1nezG in template set Warning: unaligning (T0547)S372 (1nezG)G19 because T (delta_L) conformation "forbidden" or filtered. T0547 370 :KP 1nezG 17 :EL T0547 373 :NALEYL 1nezG 20 :QKVDLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=98272 # 1ckmA.371.176 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)A374 (1ckmA)E180 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H379 (1ckmA)L185 because P (beta_P) conformation "forbidden" or filtered. T0547 371 :PSN 1ckmA 177 :NVP T0547 375 :LEYL 1ckmA 181 :DPAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=98274 # 1m7gA.371.124 read from T0547.t06.many.frag # found chain 1m7gA in training set T0547 371 :PSNALEYLH 1m7gA 125 :PGEETGLPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=98275 # 1kzfA.371.110 read from T0547.t06.many.frag # found chain 1kzfA in training set Warning: unaligning (T0547)L375 (1kzfA)G95 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H379 (1kzfA)S99 because Y (epsilon') conformation "forbidden" or filtered. T0547 371 :PSNA 1kzfA 91 :LPAY T0547 376 :EYL 1kzfA 96 :TES Number of specific fragments extracted= 2 number of extra gaps= 2 total=98277 # 1pc6A.371.25 read from T0547.t06.many.frag # found chain 1pc6A in template set T0547 371 :PSNALEYLH 1pc6A 26 :PDPTKPIVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=98278 # 1eerA.371.126 read from T0547.t06.many.frag # found chain 1eerA in template set Warning: unaligning (T0547)A374 (1eerA)L130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L375 (1eerA)R131 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1eerA)T132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L378 (1eerA)T134 because Y (epsilon') conformation "forbidden" or filtered. T0547 371 :PSN 1eerA 127 :AAP T0547 377 :Y 1eerA 133 :I T0547 379 :H 1eerA 135 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=98281 # 2yhx.371.414 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)P371 (2yhx)Q416 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (2yhx)A418 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X419 Warning: unaligning (T0547)L375 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X420 T0547 372 :S 2yhx 417 :S T0547 376 :EYLH 2yhx 421 :SKPI Number of specific fragments extracted= 2 number of extra gaps= 2 total=98283 # 1hz4A.371.242 read from T0547.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0547)P371 (1hz4A)K241 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1hz4A)N246 because L (left) conformation "forbidden" or filtered. T0547 372 :SNAL 1hz4A 242 :PEFA T0547 377 :YLH 1hz4A 247 :NHF Number of specific fragments extracted= 2 number of extra gaps= 2 total=98285 # 7odcA.371.344 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P371 (7odcA)K345 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (7odcA)Y350 because E (beta_S) conformation "forbidden" or filtered. T0547 372 :SNAL 7odcA 346 :PDEK T0547 377 :YLH 7odcA 351 :YSS Number of specific fragments extracted= 2 number of extra gaps= 2 total=98287 # 1p0yA.371.261 read from T0547.t06.many.frag # found chain 1p0yA in template set T0547 371 :PSNALEYLH 1p0yA 306 :NENRHAYTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98288 # 1t9iA.371.66 read from T0547.t06.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)P371 (1t9iA)V67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1t9iA)R70 because D (zeta) conformation "forbidden" or filtered. T0547 372 :SN 1t9iA 68 :RD T0547 375 :LEYLH 1t9iA 71 :GSVSD Number of specific fragments extracted= 2 number of extra gaps= 2 total=98290 # 1hxn.371.110 read from T0547.t06.many.frag # found chain 1hxn in training set Warning: unaligning (T0547)P371 (1hxn)V326 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1hxn)A331 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H379 (1hxn)A334 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :SNAL 1hxn 327 :ISLE T0547 377 :YL 1hxn 332 :VD Number of specific fragments extracted= 2 number of extra gaps= 3 total=98292 # 2b0tA.371.360 read from T0547.t06.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)E376 (2b0tA)E366 because P (beta_P) conformation "forbidden" or filtered. T0547 371 :PSNAL 2b0tA 361 :NKDDQ T0547 377 :YLH 2b0tA 367 :QDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=98294 # 2bj0A.371.18 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)P371 (2bj0A)L19 because E (beta_S) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 2bj0A 20 :SNNTPLNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=98295 # 1br9.371.77 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)N373 (1br9)G80 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE in next template residue (1br9)L85 Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE at template residue (1br9)L85 T0547 371 :PS 1br9 78 :VG T0547 374 :ALE 1br9 81 :KKE T0547 379 :H 1br9 86 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=98298 # 2a25A.371.67 read from T0547.t06.many.frag # found chain 2a25A in template set Warning: unaligning (T0547)P371 (2a25A)T157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (2a25A)G160 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :SN 2a25A 158 :LQ T0547 375 :LEYLH 2a25A 161 :EDIVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=98300 # 1xhnA.371.59 read from T0547.t06.many.frag # found chain 1xhnA in template set Warning: unaligning (T0547)S372 (1xhnA)G61 because T (delta_L) conformation "forbidden" or filtered. T0547 371 :P 1xhnA 60 :P T0547 373 :NALEYLH 1xhnA 62 :AGSGVPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=98302 # 1s4cA.371.30 read from T0547.t06.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)Y377 (1s4cA)G37 because S (epsilon) conformation "forbidden" or filtered. T0547 371 :PSNALE 1s4cA 31 :LNALEN T0547 378 :LH 1s4cA 38 :RH Number of specific fragments extracted= 2 number of extra gaps= 1 total=98304 # 1uzbA.371.350 read from T0547.t06.many.frag # found chain 1uzbA in template set Warning: unaligning (T0547)P371 (1uzbA)V351 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1uzbA)G352 because Y (epsilon') conformation "forbidden" or filtered. T0547 373 :NALEYLH 1uzbA 353 :PAEENPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=98305 # 1vk5A.371.53 read from T0547.t06.many.frag # found chain 1vk5A in training set Warning: unaligning (T0547)E376 (1vk5A)G59 because P (beta_P) conformation "forbidden" or filtered. T0547 371 :PSNAL 1vk5A 54 :IPTNR T0547 377 :YLH 1vk5A 60 :SLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=98307 # 1lm8V.371.87 read from T0547.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)N373 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1lm8V)P146 because P (beta_P) conformation "forbidden" or filtered. T0547 371 :PS 1lm8V 141 :NV T0547 374 :AL 1lm8V 144 :GQ T0547 377 :YLH 1lm8V 147 :IFA Number of specific fragments extracted= 3 number of extra gaps= 2 total=98310 # 1ycdA.371.202 read from T0547.t06.many.frag # found chain 1ycdA in training set Warning: unaligning (T0547)P371 (1ycdA)N203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1ycdA)G204 because T (delta_L) conformation "forbidden" or filtered. T0547 373 :NALEYLH 1ycdA 205 :NKEKVLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=98311 # 1puc.371.28 read from T0547.t06.many.frag # found chain 1puc in template set Warning: unaligning (T0547)N373 (1puc)A32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1puc)D33 because Y (epsilon') conformation "forbidden" or filtered. T0547 371 :PS 1puc 30 :RY T0547 375 :LEYLH 1puc 34 :DEYEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=98313 # 1twfH.371.48 read from T0547.t06.many.frag # found chain 1twfH in template set Warning: unaligning (T0547)P371 (1twfH)V49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S372 (1twfH)A50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1twfH)Q52 because L (left) conformation "forbidden" or filtered. T0547 373 :N 1twfH 51 :A T0547 375 :LEYLH 1twfH 53 :DSLTV Number of specific fragments extracted= 2 number of extra gaps= 2 total=98315 # 1k8wA.371.157 read from T0547.t06.many.frag # found chain 1k8wA in template set T0547 371 :PSNALEYLH 1k8wA 145 :EVPREARPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=98316 # 1w9zA.371.219 read from T0547.t06.many.frag # found chain 1w9zA in template set T0547 371 :PSNALEYLH 1w9zA 220 :PGERTRPVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=98317 # 1nezG.371.17 read from T0547.t06.many.frag # found chain 1nezG in template set T0547 371 :PSNALEYLH 1nezG 18 :LGQKVDLVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=98318 # 1na6A.371.55 read from T0547.t06.many.frag # found chain 1na6A in template set Warning: unaligning (T0547)P371 (1na6A)H56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1na6A)N61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L378 (1na6A)S63 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :SNAL 1na6A 57 :TREL T0547 377 :Y 1na6A 62 :P T0547 379 :H 1na6A 64 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=98321 # 1jb7B.371.79 read from T0547.t06.many.frag # found chain 1jb7B in template set T0547 371 :PSNALEYLH 1jb7B 80 :IVDLTDKVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=98322 # 1vlpA.371.327 read from T0547.t06.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)P371 (1vlpA)K316 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L375 (1vlpA)F320 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1vlpA)I324 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1vlpA)I324 T0547 372 :SNA 1vlpA 317 :LPK T0547 376 :EY 1vlpA 321 :SK Number of specific fragments extracted= 2 number of extra gaps= 3 total=98324 # 1nlfA.371.201 read from T0547.t06.many.frag # found chain 1nlfA in template set T0547 371 :PSNALEYLH 1nlfA 202 :LVDNIRWQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=98325 # 7odcA.372.345 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N373 (7odcA)D347 because L (left) conformation "forbidden" or filtered. T0547 372 :S 7odcA 346 :P T0547 374 :ALEYLHD 7odcA 348 :EKYYSSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=98327 # 2yhx.372.415 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)A374 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X419 Warning: unaligning (T0547)L375 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X420 Warning: unaligning (T0547)D380 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X425 T0547 372 :SN 2yhx 417 :SA T0547 376 :EYLH 2yhx 421 :SKPI Number of specific fragments extracted= 2 number of extra gaps= 2 total=98329 # 1eerA.372.127 read from T0547.t06.many.frag # found chain 1eerA in template set Warning: unaligning (T0547)A374 (1eerA)L130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1eerA)T132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L378 (1eerA)T134 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :SN 1eerA 128 :AP T0547 375 :L 1eerA 131 :R T0547 377 :Y 1eerA 133 :I T0547 379 :HD 1eerA 135 :AD Number of specific fragments extracted= 4 number of extra gaps= 3 total=98333 # 1xhnA.372.60 read from T0547.t06.many.frag # found chain 1xhnA in template set Warning: unaligning (T0547)S372 (1xhnA)G61 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1xhnA)G65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1xhnA)F69 because E (beta_S) conformation "forbidden" or filtered. T0547 373 :NAL 1xhnA 62 :AGS T0547 377 :YLH 1xhnA 66 :VPY Number of specific fragments extracted= 2 number of extra gaps= 3 total=98335 # 1m7gA.372.125 read from T0547.t06.many.frag # found chain 1m7gA in training set T0547 372 :SNALEYLHD 1m7gA 126 :GEETGLPFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=98336 # 1kzfA.372.111 read from T0547.t06.many.frag # found chain 1kzfA in training set Warning: unaligning (T0547)H379 (1kzfA)S99 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :SNALEYL 1kzfA 92 :PAYGTES T0547 380 :D 1kzfA 100 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=98338 # 1ckmA.372.177 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)A374 (1ckmA)E180 because G (3-10) conformation "forbidden" or filtered. T0547 372 :SN 1ckmA 178 :VP T0547 375 :LEYLHD 1ckmA 181 :DPAILR Number of specific fragments extracted= 2 number of extra gaps= 1 total=98340 # 1sx5A.372.96 read from T0547.t06.many.frag # found chain 1sx5A in training set T0547 372 :SNALEYLHD 1sx5A 98 :KENEKIKFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=98341 # 1hz4A.372.243 read from T0547.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0547)L375 (1hz4A)A245 because L (left) conformation "forbidden" or filtered. T0547 372 :SNA 1hz4A 242 :PEF T0547 376 :EYLHD 1hz4A 246 :NNHFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=98343 # 1pc6A.372.26 read from T0547.t06.many.frag # found chain 1pc6A in template set T0547 372 :SNALEYLHD 1pc6A 27 :DPTKPIVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=98344 # 1suuA.372.95 read from T0547.t06.many.frag # found chain 1suuA in training set T0547 372 :SNALEYLHD 1suuA 594 :LGDQEEILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=98345 # 2b0tA.372.361 read from T0547.t06.many.frag # found chain 2b0tA in training set T0547 372 :SNALEYLHD 2b0tA 362 :KDDQEQDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98346 # 1twfH.372.49 read from T0547.t06.many.frag # found chain 1twfH in template set Warning: unaligning (T0547)S372 (1twfH)A50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N373 (1twfH)A51 because P (beta_P) conformation "forbidden" or filtered. T0547 374 :ALEYLHD 1twfH 52 :QDSLTVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=98347 # 1t9iA.372.67 read from T0547.t06.many.frag # found chain 1t9iA in training set Warning: unaligning (T0547)A374 (1t9iA)R70 because D (zeta) conformation "forbidden" or filtered. T0547 372 :SN 1t9iA 68 :RD T0547 375 :LEYLHD 1t9iA 71 :GSVSDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=98349 # 1lm8V.372.88 read from T0547.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)N373 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1lm8V)N150 because P (beta_P) conformation "forbidden" or filtered. T0547 372 :S 1lm8V 142 :V T0547 374 :ALEYLH 1lm8V 144 :GQPIFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=98351 # 1puc.372.29 read from T0547.t06.many.frag # found chain 1puc in template set Warning: unaligning (T0547)N373 (1puc)A32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1puc)D33 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :S 1puc 31 :Y T0547 375 :LEYLHD 1puc 34 :DEYEYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=98353 # 2c1lA.372.192 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 372 :SNALEYLHD 2c1lA 193 :LDETERVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98354 # 1vlpA.372.328 read from T0547.t06.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1vlpA)I324 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1vlpA)I324 T0547 372 :SNALEY 1vlpA 317 :LPKFSK T0547 380 :D 1vlpA 325 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=98356 # 1na6A.372.56 read from T0547.t06.many.frag # found chain 1na6A in template set Warning: unaligning (T0547)L378 (1na6A)S63 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1na6A)F65 because P (beta_P) conformation "forbidden" or filtered. T0547 372 :SNALEY 1na6A 57 :TRELNP T0547 379 :H 1na6A 64 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=98358 # 1e7lA.372.46 read from T0547.t06.many.frag # found chain 1e7lA in training set Warning: unaligning (T0547)E376 (1e7lA)G51 because T (delta_L) conformation "forbidden" or filtered. T0547 372 :SNAL 1e7lA 47 :GPKA T0547 377 :YLHD 1e7lA 52 :KVRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=98360 # 1nezG.372.18 read from T0547.t06.many.frag # found chain 1nezG in template set Warning: unaligning (T0547)S372 (1nezG)G19 because T (delta_L) conformation "forbidden" or filtered. T0547 373 :NALEYLHD 1nezG 20 :QKVDLVCE Number of specific fragments extracted= 1 number of extra gaps= 1 total=98361 # 1txgA.372.125 read from T0547.t06.many.frag # found chain 1txgA in training set Warning: unaligning (T0547)D380 (1txgA)A134 because E (beta_S) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1txgA 126 :HDLRERTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=98362 # 1wpnA.372.102 read from T0547.t06.many.frag # found chain 1wpnA in training set T0547 372 :SNALEYLHD 1wpnA 103 :FETAEPLYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=98363 # 1m15A.372.160 read from T0547.t06.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)E376 (1m15A)G165 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :SNAL 1m15A 161 :DELK T0547 377 :YLHD 1m15A 166 :TYYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=98365 # 1jg5A.372.38 read from T0547.t06.many.frag # found chain 1jg5A in template set Warning: unaligning (T0547)A374 (1jg5A)N41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1jg5A)Y47 because Y (epsilon') conformation "forbidden" or filtered. T0547 372 :SN 1jg5A 39 :LG T0547 375 :LEYLH 1jg5A 42 :NFYEY Number of specific fragments extracted= 2 number of extra gaps= 2 total=98367 # 1bu6O.372.229 read from T0547.t06.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)N373 (1bu6O)G231 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1bu6O)T235 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1bu6O)T235 Warning: unaligning (T0547)D380 (1bu6O)P238 because P (beta_P) conformation "forbidden" or filtered. T0547 372 :S 1bu6O 230 :G T0547 374 :AL 1bu6O 232 :KG T0547 378 :LH 1bu6O 236 :RI Number of specific fragments extracted= 3 number of extra gaps= 3 total=98370 # 1vk5A.372.54 read from T0547.t06.many.frag # found chain 1vk5A in training set T0547 372 :SNALEYLHD 1vk5A 55 :PTNRGSLIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=98371 # 1l8aA.372.718 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)D380 (1l8aA)Q727 because E (beta_S) conformation "forbidden" or filtered. T0547 372 :SNALEYLH 1l8aA 719 :IEGSKGKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=98372 # 1vkpA.372.265 read from T0547.t06.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)A374 (1vkpA)G268 because T (delta_L) conformation "forbidden" or filtered. T0547 372 :SN 1vkpA 266 :AR T0547 375 :LEYLHD 1vkpA 269 :RKIQVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=98374 # 1k8wA.372.158 read from T0547.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)N373 (1k8wA)P147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1k8wA)R148 because E (beta_S) conformation "forbidden" or filtered. T0547 372 :S 1k8wA 146 :V T0547 375 :LEYLHD 1k8wA 149 :EARPIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=98376 # 7odcA.373.346 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 373 :NALEYLHDS 7odcA 347 :DEKYYSSSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=98377 # 2yhx.373.416 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)A374 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X419 Warning: unaligning (T0547)L375 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X420 Warning: unaligning (T0547)D380 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X425 Warning: unaligning (T0547)S381 (2yhx)I426 because P (beta_P) conformation "forbidden" or filtered. T0547 373 :N 2yhx 418 :A T0547 376 :EYLH 2yhx 421 :SKPI Number of specific fragments extracted= 2 number of extra gaps= 2 total=98379 # 1xhnA.373.61 read from T0547.t06.many.frag # found chain 1xhnA in template set T0547 373 :NALEYLHDS 1xhnA 62 :AGSGVPYFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=98380 # 1sx5A.373.97 read from T0547.t06.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)E376 (1sx5A)K102 because P (beta_P) conformation "forbidden" or filtered. T0547 373 :NAL 1sx5A 99 :ENE T0547 377 :YLHDS 1sx5A 103 :IKFTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=98382 # 1eerA.373.128 read from T0547.t06.many.frag # found chain 1eerA in template set Warning: unaligning (T0547)A374 (1eerA)L130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L375 (1eerA)R131 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1eerA)T132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L378 (1eerA)T134 because Y (epsilon') conformation "forbidden" or filtered. T0547 373 :N 1eerA 129 :P T0547 377 :Y 1eerA 133 :I T0547 379 :HDS 1eerA 135 :ADT Number of specific fragments extracted= 3 number of extra gaps= 2 total=98385 # 1e7lA.373.47 read from T0547.t06.many.frag # found chain 1e7lA in training set T0547 373 :NALEYLHDS 1e7lA 48 :PKAGKVRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98386 # 1knwA.373.328 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)D380 (1knwA)V336 because P (beta_P) conformation "forbidden" or filtered. T0547 373 :NALEYLH 1knwA 329 :HAPTVET T0547 381 :S 1knwA 337 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=98388 # 2c1lA.373.193 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 373 :NALEYLHDS 2c1lA 194 :DETERVTLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=98389 # 1suuA.373.96 read from T0547.t06.many.frag # found chain 1suuA in training set T0547 373 :NALEYLHDS 1suuA 595 :GDQEEILTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=98390 # 1m7gA.373.126 read from T0547.t06.many.frag # found chain 1m7gA in training set T0547 373 :NALEYLHDS 1m7gA 127 :EETGLPFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98391 # 1hz4A.373.244 read from T0547.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0547)L375 (1hz4A)A245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1hz4A)N246 because L (left) conformation "forbidden" or filtered. T0547 373 :NA 1hz4A 243 :EF T0547 377 :YLHDS 1hz4A 247 :NHFLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=98393 # 2b0tA.373.362 read from T0547.t06.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)A374 (2b0tA)D364 because L (left) conformation "forbidden" or filtered. T0547 373 :N 2b0tA 363 :D T0547 375 :LEYLHDS 2b0tA 365 :QEQDTLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=98395 # 1bu6O.373.230 read from T0547.t06.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1bu6O)T235 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1bu6O)T235 T0547 373 :NAL 1bu6O 231 :GKG T0547 378 :LHDS 1bu6O 236 :RIPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=98397 # 1kzfA.373.112 read from T0547.t06.many.frag # found chain 1kzfA in training set Warning: unaligning (T0547)L375 (1kzfA)G95 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H379 (1kzfA)S99 because Y (epsilon') conformation "forbidden" or filtered. T0547 373 :NA 1kzfA 93 :AY T0547 376 :EYL 1kzfA 96 :TES T0547 380 :DS 1kzfA 100 :RF Number of specific fragments extracted= 3 number of extra gaps= 2 total=98400 # 1m15A.373.161 read from T0547.t06.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)E376 (1m15A)G165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1m15A)P169 because P (beta_P) conformation "forbidden" or filtered. T0547 373 :NAL 1m15A 162 :ELK T0547 377 :YLH 1m15A 166 :TYY T0547 381 :S 1m15A 170 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=98403 # 1puc.373.30 read from T0547.t06.many.frag # found chain 1puc in template set Warning: unaligning (T0547)N373 (1puc)A32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A374 (1puc)D33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1puc)R39 because Y (epsilon') conformation "forbidden" or filtered. T0547 375 :LEYLH 1puc 34 :DEYEY T0547 381 :S 1puc 40 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=98405 1nh1A expands to /projects/compbio/data/pdb/1nh1.pdb.gz 1nh1A:# 1nh1A.373.118 read from T0547.t06.many.frag # adding 1nh1A to template set # found chain 1nh1A in template set Warning: unaligning (T0547)E376 (1nh1A)D122 because P (beta_P) conformation "forbidden" or filtered. T0547 373 :NAL 1nh1A 119 :SDT T0547 377 :YLHDS 1nh1A 123 :AVTPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=98407 # 1wpnA.373.103 read from T0547.t06.many.frag # found chain 1wpnA in training set Warning: unaligning (T0547)N373 (1wpnA)E104 because E (beta_S) conformation "forbidden" or filtered. T0547 374 :ALEYLHDS 1wpnA 105 :TAEPLYYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=98408 # 1r26A.373.14 read from T0547.t06.many.frag # found chain 1r26A in training set Warning: unaligning (T0547)A374 (1r26A)A-3 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1r26A)S1 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1r26A)S1 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE in next template residue (1r26A)V3 Warning: unaligning (T0547)D380 because of BadResidue code BAD_PEPTIDE at template residue (1r26A)V3 T0547 373 :N 1r26A -4 :R T0547 375 :LE 1r26A -2 :RY T0547 381 :S 1r26A 4 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=98411 # 1y93A.373.71 read from T0547.t06.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)E376 (1y93A)G179 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H379 (1y93A)A182 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1y93A)H183 because Y (epsilon') conformation "forbidden" or filtered. T0547 373 :NAL 1y93A 176 :GKG T0547 377 :YL 1y93A 180 :IL T0547 381 :S 1y93A 184 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=98414 # 1txgA.373.126 read from T0547.t06.many.frag # found chain 1txgA in training set Warning: unaligning (T0547)D380 (1txgA)A134 because E (beta_S) conformation "forbidden" or filtered. T0547 373 :NALEYLH 1txgA 127 :DLRERTV T0547 381 :S 1txgA 135 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=98416 # 1l8aA.373.719 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 373 :NALEYLHDS 1l8aA 720 :EGSKGKVQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98417 # 1ckmA.373.178 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)D380 (1ckmA)R186 because E (beta_S) conformation "forbidden" or filtered. T0547 373 :NALEYLH 1ckmA 179 :PEDPAIL T0547 381 :S 1ckmA 187 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=98419 # 1fjgL.373.91 read from T0547.t06.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)A374 (1fjgL)L93 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1fjgL)G95 because T (delta_L) conformation "forbidden" or filtered. T0547 373 :N 1fjgL 92 :D T0547 375 :L 1fjgL 94 :P T0547 377 :YLHDS 1fjgL 96 :VRYHI Number of specific fragments extracted= 3 number of extra gaps= 2 total=98422 # 2blnA.373.188 read from T0547.t06.many.frag # found chain 2blnA in training set T0547 373 :NALEYLHDS 2blnA 189 :AQRENEATC Number of specific fragments extracted= 1 number of extra gaps= 0 total=98423 # 1lm8V.373.89 read from T0547.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)A374 (1lm8V)G144 because L (left) conformation "forbidden" or filtered. T0547 373 :N 1lm8V 143 :D T0547 375 :LEYLHDS 1lm8V 145 :QPIFANI Number of specific fragments extracted= 2 number of extra gaps= 1 total=98425 # 1nlfA.373.203 read from T0547.t06.many.frag # found chain 1nlfA in template set T0547 373 :NALEYLHDS 1nlfA 204 :DNIRWQSYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98426 # 1kpsB.373.110 read from T0547.t06.many.frag # found chain 1kpsB in template set Warning: unaligning (T0547)A374 (1kpsB)K530 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1kpsB)S536 because E (beta_S) conformation "forbidden" or filtered. T0547 373 :N 1kpsB 529 :D T0547 375 :LEYLH 1kpsB 531 :IKAIP T0547 381 :S 1kpsB 537 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=98429 2bxxA expands to /projects/compbio/data/pdb/2bxx.pdb.gz 2bxxA:# 2bxxA.373.81 read from T0547.t06.many.frag # adding 2bxxA to template set # found chain 2bxxA in template set Warning: unaligning (T0547)A374 (2bxxA)T109 because P (beta_P) conformation "forbidden" or filtered. T0547 373 :N 2bxxA 108 :D T0547 375 :LEYLHDS 2bxxA 110 :QDGIVWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=98431 # 1lst.373.130 read from T0547.t06.many.frag # found chain 1lst in training set Warning: unaligning (T0547)E376 (1lst)G134 because T (delta_L) conformation "forbidden" or filtered. T0547 373 :NAL 1lst 131 :RTK T0547 377 :YLHDS 1lst 135 :VDVVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=98433 # 7odcA.374.347 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 374 :ALEYLHDSI 7odcA 348 :EKYYSSSIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=98434 # 1knwA.374.329 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 374 :ALEYLHDSI 1knwA 330 :APTVETVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98435 # 1xhnA.374.62 read from T0547.t06.many.frag # found chain 1xhnA in template set Warning: unaligning (T0547)A374 (1xhnA)G63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1xhnA)G65 because T (delta_L) conformation "forbidden" or filtered. T0547 375 :L 1xhnA 64 :S T0547 377 :YLHDSI 1xhnA 66 :VPYFYL Number of specific fragments extracted= 2 number of extra gaps= 2 total=98437 # 2yhx.374.417 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)A374 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X419 Warning: unaligning (T0547)L375 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X420 Warning: unaligning (T0547)D380 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X425 T0547 376 :EYLH 2yhx 421 :SKPI T0547 381 :SI 2yhx 426 :IT Number of specific fragments extracted= 2 number of extra gaps= 2 total=98439 # 1sx5A.374.98 read from T0547.t06.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)I382 (1sx5A)G108 because S (epsilon) conformation "forbidden" or filtered. T0547 374 :ALEYLHDS 1sx5A 100 :NEKIKFTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=98440 # 1lst.374.131 read from T0547.t06.many.frag # found chain 1lst in training set Warning: unaligning (T0547)E376 (1lst)G134 because T (delta_L) conformation "forbidden" or filtered. T0547 374 :AL 1lst 132 :TK T0547 377 :YLHDSI 1lst 135 :VDVVAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=98442 # 1eerA.374.129 read from T0547.t06.many.frag # found chain 1eerA in template set Warning: unaligning (T0547)A374 (1eerA)L130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L375 (1eerA)R131 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1eerA)T132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L378 (1eerA)T134 because Y (epsilon') conformation "forbidden" or filtered. T0547 377 :Y 1eerA 133 :I T0547 379 :HDSI 1eerA 135 :ADTF Number of specific fragments extracted= 2 number of extra gaps= 2 total=98444 # 2c1lA.374.194 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 374 :ALEYLHDSI 2c1lA 195 :ETERVTLIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=98445 # 1e7lA.374.48 read from T0547.t06.many.frag # found chain 1e7lA in training set Warning: unaligning (T0547)D380 (1e7lA)G55 because Y (epsilon') conformation "forbidden" or filtered. T0547 374 :ALEYLH 1e7lA 49 :KAGKVR T0547 381 :SI 1e7lA 56 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=98447 # 1r26A.374.15 read from T0547.t06.many.frag # found chain 1r26A in training set Warning: unaligning (T0547)A374 (1r26A)A-3 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1r26A)S1 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1r26A)S1 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE in next template residue (1r26A)V3 Warning: unaligning (T0547)D380 because of BadResidue code BAD_PEPTIDE at template residue (1r26A)V3 T0547 375 :LE 1r26A -2 :RY T0547 381 :SI 1r26A 4 :DV Number of specific fragments extracted= 2 number of extra gaps= 2 total=98449 # 1y93A.374.72 read from T0547.t06.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)E376 (1y93A)G179 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1y93A)H183 because Y (epsilon') conformation "forbidden" or filtered. T0547 374 :AL 1y93A 177 :KG T0547 377 :YLH 1y93A 180 :ILA T0547 381 :SI 1y93A 184 :AF Number of specific fragments extracted= 3 number of extra gaps= 2 total=98452 # 1puc.374.31 read from T0547.t06.many.frag # found chain 1puc in template set Warning: unaligning (T0547)A374 (1puc)D33 because Y (epsilon') conformation "forbidden" or filtered. T0547 375 :LEYLHDSI 1puc 34 :DEYEYRHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=98453 # 1a4iA.374.162 read from T0547.t06.many.frag # found chain 1a4iA in training set T0547 374 :ALEYLHDSI 1a4iA 163 :IAGRHAVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=98454 # 1kmvA.374.81 read from T0547.t06.many.frag # found chain 1kmvA in training set Warning: unaligning (T0547)D380 (1kmvA)F88 because E (beta_S) conformation "forbidden" or filtered. T0547 374 :ALEYLH 1kmvA 82 :PPQGAH T0547 381 :SI 1kmvA 89 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=98456 # 1bu6O.374.231 read from T0547.t06.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)E376 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1bu6O)T235 Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1bu6O)T235 T0547 374 :AL 1bu6O 232 :KG T0547 378 :LHDSI 1bu6O 236 :RIPIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=98458 # 1xbiA.374.69 read from T0547.t06.many.frag # found chain 1xbiA in training set Warning: unaligning (T0547)E376 (1xbiA)G69 because L (left) conformation "forbidden" or filtered. T0547 374 :AL 1xbiA 67 :EK T0547 377 :YLHDSI 1xbiA 70 :IPYAYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=98460 # 2blnA.374.189 read from T0547.t06.many.frag # found chain 2blnA in training set T0547 374 :ALEYLHDSI 2blnA 190 :QRENEATCF Number of specific fragments extracted= 1 number of extra gaps= 0 total=98461 # 1nh1A.374.119 read from T0547.t06.many.frag # found chain 1nh1A in template set Warning: unaligning (T0547)I382 (1nh1A)V128 because Y (epsilon') conformation "forbidden" or filtered. T0547 374 :ALEYLHDS 1nh1A 120 :DTDAVTPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=98462 # 1jy1A.374.287 read from T0547.t06.many.frag # found chain 1jy1A in training set Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jy1A)S434 T0547 377 :YLHDSI 1jy1A 435 :VPLYLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=98463 # 1txgA.374.127 read from T0547.t06.many.frag # found chain 1txgA in training set T0547 374 :ALEYLHDSI 1txgA 128 :LRERTVAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=98464 # 1m15A.374.162 read from T0547.t06.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)E376 (1m15A)G165 because Y (epsilon') conformation "forbidden" or filtered. T0547 374 :AL 1m15A 163 :LK T0547 377 :YLHDSI 1m15A 166 :TYYPLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=98466 # 2bycA.374.89 read from T0547.t06.many.frag # found chain 2bycA in template set T0547 374 :ALEYLHDSI 2bycA 89 :FPDWSMRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=98467 # 1rcqA.374.287 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)L375 (1rcqA)D289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1rcqA)G290 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H379 (1rcqA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0547 374 :A 1rcqA 288 :I T0547 377 :YL 1rcqA 291 :KP T0547 380 :DSI 1rcqA 294 :RLV Number of specific fragments extracted= 3 number of extra gaps= 2 total=98470 # 1rkuA.374.142 read from T0547.t06.many.frag # found chain 1rkuA in training set Warning: unaligning (T0547)E376 (1rkuA)Y144 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1rkuA)I148 because E (beta_S) conformation "forbidden" or filtered. T0547 374 :AL 1rkuA 142 :SL T0547 377 :YLH 1rkuA 145 :YRV T0547 381 :SI 1rkuA 149 :AA Number of specific fragments extracted= 3 number of extra gaps= 2 total=98473 # 1m7gA.374.127 read from T0547.t06.many.frag # found chain 1m7gA in training set T0547 374 :ALEYLHDSI 1m7gA 128 :ETGLPFVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=98474 # 2bkxA.374.146 read from T0547.t06.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)A374 (2bkxA)S147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (2bkxA)H153 because Y (epsilon') conformation "forbidden" or filtered. T0547 375 :LEYLH 2bkxA 148 :FKSRT T0547 381 :SI 2bkxA 154 :VV Number of specific fragments extracted= 2 number of extra gaps= 2 total=98476 # 1jayA.374.145 read from T0547.t06.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)L375 (1jayA)F147 because Y (epsilon') conformation "forbidden" or filtered. T0547 374 :A 1jayA 146 :K T0547 376 :EYLHDSI 1jayA 148 :DWDVPVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=98478 # 2b0tA.374.363 read from T0547.t06.many.frag # found chain 2b0tA in training set Warning: unaligning (T0547)A374 (2b0tA)D364 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (2b0tA)E366 because P (beta_P) conformation "forbidden" or filtered. T0547 375 :L 2b0tA 365 :Q T0547 377 :YLHDSI 2b0tA 367 :QDTLAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=98480 # 1fjgL.374.92 read from T0547.t06.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)A374 (1fjgL)L93 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1fjgL)G95 because T (delta_L) conformation "forbidden" or filtered. T0547 375 :L 1fjgL 94 :P T0547 377 :YLHDSI 1fjgL 96 :VRYHIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=98482 # 1iu8A.374.102 read from T0547.t06.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)A374 (1iu8A)G103 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L378 (1iu8A)A107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1iu8A)A110 because P (beta_P) conformation "forbidden" or filtered. T0547 375 :LEY 1iu8A 104 :GPA T0547 379 :HD 1iu8A 108 :YF T0547 382 :I 1iu8A 111 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=98485 # 7odcA.375.348 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D383 (7odcA)G357 because P (beta_P) conformation "forbidden" or filtered. T0547 375 :LEYLHDSI 7odcA 349 :KYYSSSIW Number of specific fragments extracted= 1 number of extra gaps= 1 total=98486 # 1knwA.375.330 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 375 :LEYLHDSID 1knwA 331 :PTVETVVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=98487 # 1xhnA.375.63 read from T0547.t06.many.frag # found chain 1xhnA in template set Warning: unaligning (T0547)E376 (1xhnA)G65 because T (delta_L) conformation "forbidden" or filtered. T0547 375 :L 1xhnA 64 :S T0547 377 :YLHDSID 1xhnA 66 :VPYFYLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=98489 # 1lst.375.132 read from T0547.t06.many.frag # found chain 1lst in training set Warning: unaligning (T0547)D380 (1lst)V138 because E (beta_S) conformation "forbidden" or filtered. T0547 375 :LEYLH 1lst 133 :KGVDV T0547 381 :SID 1lst 139 :AYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=98491 # 2bkxA.375.147 read from T0547.t06.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D380 (2bkxA)H153 because Y (epsilon') conformation "forbidden" or filtered. T0547 375 :LEYLH 2bkxA 148 :FKSRT T0547 381 :SID 2bkxA 154 :VVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=98493 # 1sx5A.375.99 read from T0547.t06.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)S381 (1sx5A)L107 because G (3-10) conformation "forbidden" or filtered. T0547 375 :LEYLHD 1sx5A 101 :EKIKFT T0547 382 :ID 1sx5A 108 :GG Number of specific fragments extracted= 2 number of extra gaps= 1 total=98495 # 1r26A.375.16 read from T0547.t06.many.frag # found chain 1r26A in training set Warning: unaligning (T0547)Y377 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1r26A)S1 Warning: unaligning (T0547)L378 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1r26A)S1 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE in next template residue (1r26A)V3 Warning: unaligning (T0547)D380 because of BadResidue code BAD_PEPTIDE at template residue (1r26A)V3 T0547 375 :LE 1r26A -2 :RY T0547 381 :SID 1r26A 4 :DVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=98497 # 1kmvA.375.82 read from T0547.t06.many.frag # found chain 1kmvA in training set Warning: unaligning (T0547)Y377 (1kmvA)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 375 :LE 1kmvA 83 :PQ T0547 378 :LHDSID 1kmvA 86 :AHFLSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=98499 # 1e7lA.375.49 read from T0547.t06.many.frag # found chain 1e7lA in training set Warning: unaligning (T0547)E376 (1e7lA)G51 because T (delta_L) conformation "forbidden" or filtered. T0547 375 :L 1e7lA 50 :A T0547 377 :YLHDSID 1e7lA 52 :KVRGLLC Number of specific fragments extracted= 2 number of extra gaps= 1 total=98501 # 1eerA.375.130 read from T0547.t06.many.frag # found chain 1eerA in template set Warning: unaligning (T0547)L375 (1eerA)R131 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E376 (1eerA)T132 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L378 (1eerA)T134 because Y (epsilon') conformation "forbidden" or filtered. T0547 377 :Y 1eerA 133 :I T0547 379 :HDSID 1eerA 135 :ADTFR Number of specific fragments extracted= 2 number of extra gaps= 2 total=98503 # 1xbiA.375.70 read from T0547.t06.many.frag # found chain 1xbiA in training set Warning: unaligning (T0547)E376 (1xbiA)G69 because L (left) conformation "forbidden" or filtered. T0547 375 :L 1xbiA 68 :K T0547 377 :YLHDSID 1xbiA 70 :IPYAYVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=98505 # 1rkuA.375.143 read from T0547.t06.many.frag # found chain 1rkuA in training set Warning: unaligning (T0547)E376 (1rkuA)Y144 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1rkuA)G151 because Y (epsilon') conformation "forbidden" or filtered. T0547 375 :L 1rkuA 143 :L T0547 377 :YLHDSI 1rkuA 145 :YRVIAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=98507 # 1y93A.375.73 read from T0547.t06.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)E376 (1y93A)G179 because S (epsilon) conformation "forbidden" or filtered. T0547 375 :L 1y93A 178 :G T0547 377 :YLHDSID 1y93A 180 :ILAHAFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=98509 # 1jy1A.375.288 read from T0547.t06.many.frag # found chain 1jy1A in training set Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jy1A)S434 T0547 377 :YLHDSID 1jy1A 435 :VPLYLIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=98510 # 1nh1A.375.120 read from T0547.t06.many.frag # found chain 1nh1A in template set Warning: unaligning (T0547)Y377 (1nh1A)A123 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I382 (1nh1A)V128 because Y (epsilon') conformation "forbidden" or filtered. T0547 375 :LE 1nh1A 121 :TD T0547 378 :LHDS 1nh1A 124 :VTPL T0547 383 :D 1nh1A 129 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=98513 # 1m15A.375.163 read from T0547.t06.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)D383 (1m15A)G172 because T (delta_L) conformation "forbidden" or filtered. T0547 375 :LEYLHDSI 1m15A 164 :KGTYYPLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=98514 # 1to6A.375.252 read from T0547.t06.many.frag # found chain 1to6A in template set T0547 375 :LEYLHDSID 1to6A 253 :AFAQASIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=98515 # 1rcqA.375.288 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)L375 (1rcqA)D289 because L (left) conformation "forbidden" or filtered. T0547 376 :EYLHDSID 1rcqA 290 :GKPGRLVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=98516 # 1puc.375.32 read from T0547.t06.many.frag # found chain 1puc in template set Warning: unaligning (T0547)D380 (1puc)R39 because Y (epsilon') conformation "forbidden" or filtered. T0547 375 :LEYLH 1puc 34 :DEYEY T0547 381 :SID 1puc 40 :HVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=98518 # 1g6sA.375.396 read from T0547.t06.many.frag # found chain 1g6sA in training set Warning: unaligning (T0547)L375 (1g6sA)S397 because Y (epsilon') conformation "forbidden" or filtered. T0547 376 :EYLHDSID 1g6sA 398 :DTPVTILD Number of specific fragments extracted= 1 number of extra gaps= 1 total=98519 # 1a4iA.375.163 read from T0547.t06.many.frag # found chain 1a4iA in training set Warning: unaligning (T0547)E376 (1a4iA)G165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1a4iA)V169 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1a4iA)G172 because S (epsilon) conformation "forbidden" or filtered. T0547 375 :L 1a4iA 164 :A T0547 377 :YLH 1a4iA 166 :RHA T0547 381 :SI 1a4iA 170 :VV Number of specific fragments extracted= 3 number of extra gaps= 3 total=98522 # 2yhx.375.418 read from T0547.t06.many.frag # found chain 2yhx in template set Warning: unaligning (T0547)L375 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X420 Warning: unaligning (T0547)D380 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X425 T0547 376 :EYLH 2yhx 421 :SKPI T0547 381 :SID 2yhx 426 :ITP Number of specific fragments extracted= 2 number of extra gaps= 2 total=98524 # 1l1lA.375.539 read from T0547.t06.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)E376 (1l1lA)S541 because P (beta_P) conformation "forbidden" or filtered. T0547 375 :L 1l1lA 540 :E T0547 377 :YLHDSID 1l1lA 542 :IKHTTVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=98526 # 1i6lA.375.199 read from T0547.t06.many.frag # found chain 1i6lA in training set T0547 375 :LEYLHDSID 1i6lA 200 :PKAYITLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98527 # 1s2oA.375.176 read from T0547.t06.many.frag # found chain 1s2oA in training set Warning: unaligning (T0547)D383 (1s2oA)G185 because Y (epsilon') conformation "forbidden" or filtered. T0547 375 :LEYLHDSI 1s2oA 177 :EPSQTLVC Number of specific fragments extracted= 1 number of extra gaps= 1 total=98528 # 1jayA.375.146 read from T0547.t06.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)L375 (1jayA)F147 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H379 (1jayA)V151 because D (zeta) conformation "forbidden" or filtered. T0547 376 :EYL 1jayA 148 :DWD T0547 380 :DSID 1jayA 152 :PVCG Number of specific fragments extracted= 2 number of extra gaps= 2 total=98530 # 2bycA.375.90 read from T0547.t06.many.frag # found chain 2bycA in template set T0547 375 :LEYLHDSID 2bycA 90 :PDWSMRIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=98531 # 2blnA.375.190 read from T0547.t06.many.frag # found chain 2blnA in training set T0547 375 :LEYLHDSID 2blnA 191 :RENEATCFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=98532 # 1hqz1.375.41 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)Y377 (1hqz1)E44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 375 :LE 1hqz1 42 :EY T0547 378 :LH 1hqz1 45 :PE T0547 381 :SID 1hqz1 48 :TGS Number of specific fragments extracted= 3 number of extra gaps= 2 total=98535 # 1e0tA.375.369 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)T378 Warning: unaligning (T0547)D383 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)T378 T0547 375 :LEYLHDS 1e0tA 370 :DAPLIVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=98536 # 7odcA.376.349 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 376 :EYLHDSIDH 7odcA 350 :YYSSSIWGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=98537 # 1knwA.376.331 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 376 :EYLHDSIDH 1knwA 332 :TVETVVAGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=98538 # 1lst.376.133 read from T0547.t06.many.frag # found chain 1lst in training set Warning: unaligning (T0547)E376 (1lst)G134 because T (delta_L) conformation "forbidden" or filtered. T0547 377 :YLHDSIDH 1lst 135 :VDVVAYAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=98539 # 1to6A.376.253 read from T0547.t06.many.frag # found chain 1to6A in template set Warning: unaligning (T0547)L378 (1to6A)Q256 because L (left) conformation "forbidden" or filtered. T0547 376 :EY 1to6A 254 :FA T0547 379 :HDSIDH 1to6A 257 :ASIVSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=98541 # 1xhnA.376.64 read from T0547.t06.many.frag # found chain 1xhnA in template set Warning: unaligning (T0547)E376 (1xhnA)G65 because T (delta_L) conformation "forbidden" or filtered. T0547 377 :YLHDSIDH 1xhnA 66 :VPYFYLSP Number of specific fragments extracted= 1 number of extra gaps= 1 total=98542 # 1sx5A.376.100 read from T0547.t06.many.frag # found chain 1sx5A in training set Warning: unaligning (T0547)I382 (1sx5A)G108 because S (epsilon) conformation "forbidden" or filtered. T0547 376 :EYLHDS 1sx5A 102 :KIKFTL T0547 383 :DH 1sx5A 109 :GY Number of specific fragments extracted= 2 number of extra gaps= 1 total=98544 # 2bkxA.376.148 read from T0547.t06.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D380 (2bkxA)H153 because Y (epsilon') conformation "forbidden" or filtered. T0547 376 :EYLH 2bkxA 149 :KSRT T0547 381 :SIDH 2bkxA 154 :VVTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=98546 # 1m15A.376.164 read from T0547.t06.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)E376 (1m15A)G165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1m15A)P169 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1m15A)G172 because T (delta_L) conformation "forbidden" or filtered. T0547 377 :YLH 1m15A 166 :TYY T0547 381 :SI 1m15A 170 :LT T0547 384 :H 1m15A 173 :M Number of specific fragments extracted= 3 number of extra gaps= 3 total=98549 # 1l1lA.376.540 read from T0547.t06.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)S381 (1l1lA)T546 because Y (epsilon') conformation "forbidden" or filtered. T0547 376 :EYLHD 1l1lA 541 :SIKHT T0547 382 :IDH 1l1lA 547 :VKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=98551 # 1kmvA.376.83 read from T0547.t06.many.frag # found chain 1kmvA in training set Warning: unaligning (T0547)H379 (1kmvA)H87 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1kmvA)F88 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1kmvA)S92 because Y (epsilon') conformation "forbidden" or filtered. T0547 376 :EYL 1kmvA 84 :QGA T0547 381 :SID 1kmvA 89 :LSR Number of specific fragments extracted= 2 number of extra gaps= 2 total=98553 # 1rkuA.376.144 read from T0547.t06.many.frag # found chain 1rkuA in training set T0547 376 :EYLHDSIDH 1rkuA 144 :YYRVIAAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98554 # 1qmeA.376.645 read from T0547.t06.many.frag # found chain 1qmeA in template set T0547 376 :EYLHDSIDH 1qmeA 694 :EEVPDMYGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=98555 # 1hqz1.376.42 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)D380 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 376 :EYLH 1hqz1 43 :YEPE T0547 381 :SIDH 1hqz1 48 :TGSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=98557 # 1y93A.376.74 read from T0547.t06.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)E376 (1y93A)G179 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H379 (1y93A)A182 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1y93A)H183 because Y (epsilon') conformation "forbidden" or filtered. T0547 377 :YL 1y93A 180 :IL T0547 381 :SIDH 1y93A 184 :AFGP Number of specific fragments extracted= 2 number of extra gaps= 2 total=98559 # 2d0oA.376.381 read from T0547.t06.many.frag # found chain 2d0oA in template set Warning: unaligning (T0547)E376 (2d0oA)N382 because L (left) conformation "forbidden" or filtered. T0547 377 :YLHDSIDH 2d0oA 383 :IDVQIGGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=98560 # 1fjgJ.376.68 read from T0547.t06.many.frag # found chain 1fjgJ in template set Warning: unaligning (T0547)Y377 (1fjgJ)R70 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H379 (1fjgJ)V72 because S (epsilon) conformation "forbidden" or filtered. T0547 376 :E 1fjgJ 69 :N T0547 378 :L 1fjgJ 71 :L T0547 380 :DSIDH 1fjgJ 73 :DIINP Number of specific fragments extracted= 3 number of extra gaps= 2 total=98563 # 1vqvA.376.202 read from T0547.t06.many.frag # found chain 1vqvA in template set Warning: unaligning (T0547)H384 (1vqvA)G211 because S (epsilon) conformation "forbidden" or filtered. T0547 376 :EYLHDSID 1vqvA 203 :NASMDISD Number of specific fragments extracted= 1 number of extra gaps= 1 total=98564 # 1g6sA.376.397 read from T0547.t06.many.frag # found chain 1g6sA in training set T0547 376 :EYLHDSIDH 1g6sA 398 :DTPVTILDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=98565 # 1jayA.376.147 read from T0547.t06.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)D383 (1jayA)G155 because Y (epsilon') conformation "forbidden" or filtered. T0547 376 :EYLHDSI 1jayA 148 :DWDVPVC T0547 384 :H 1jayA 156 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=98567 # 1nh1A.376.121 read from T0547.t06.many.frag # found chain 1nh1A in template set Warning: unaligning (T0547)H384 (1nh1A)P130 because C (cis) conformation "forbidden" or filtered. T0547 376 :EYLHDSID 1nh1A 122 :DAVTPLVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=98568 # 1xbiA.376.71 read from T0547.t06.many.frag # found chain 1xbiA in training set Warning: unaligning (T0547)E376 (1xbiA)G69 because L (left) conformation "forbidden" or filtered. T0547 377 :YLHDSIDH 1xbiA 70 :IPYAYVAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=98569 # 1rcqA.376.289 read from T0547.t06.many.frag # found chain 1rcqA in training set Warning: unaligning (T0547)H379 (1rcqA)G293 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1rcqA)L295 because P (beta_P) conformation "forbidden" or filtered. T0547 376 :EYL 1rcqA 290 :GKP T0547 380 :D 1rcqA 294 :R T0547 382 :IDH 1rcqA 296 :VGR Number of specific fragments extracted= 3 number of extra gaps= 2 total=98572 1qd6C expands to /projects/compbio/data/pdb/1qd6.pdb.gz 1qd6C:# 1qd6C.376.143 read from T0547.t06.many.frag # adding 1qd6C to template set # found chain 1qd6C in template set Warning: unaligning (T0547)H379 (1qd6C)W176 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1qd6C)G180 because S (epsilon) conformation "forbidden" or filtered. T0547 376 :EYL 1qd6C 173 :VKP T0547 380 :DSI 1qd6C 177 :YVV T0547 384 :H 1qd6C 181 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=98575 # 1xv5A.376.168 read from T0547.t06.many.frag # found chain 1xv5A in training set T0547 376 :EYLHDSIDH 1xv5A 1168 :APTVYNFQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=98576 # 1h5uA.376.704 read from T0547.t06.many.frag # found chain 1h5uA in template set Warning: unaligning (T0547)D383 (1h5uA)G712 because S (epsilon) conformation "forbidden" or filtered. T0547 376 :EYLHDSI 1h5uA 705 :EENFFIF T0547 384 :H 1h5uA 713 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=98578 # 1i6lA.376.200 read from T0547.t06.many.frag # found chain 1i6lA in training set T0547 376 :EYLHDSIDH 1i6lA 201 :KAYITLLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98579 # 1e0tA.376.370 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)T378 Warning: unaligning (T0547)D383 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)T378 T0547 376 :EYLHDS 1e0tA 371 :APLIVV T0547 384 :H 1e0tA 379 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=98581 # 1no7A.376.38 read from T0547.t06.many.frag # found chain 1no7A in template set T0547 376 :EYLHDSIDH 1no7A 489 :AYVAAPAGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=98582 # 1e7lA.376.50 read from T0547.t06.many.frag # found chain 1e7lA in training set Warning: unaligning (T0547)D380 (1e7lA)G55 because Y (epsilon') conformation "forbidden" or filtered. T0547 376 :EYLH 1e7lA 51 :GKVR T0547 381 :SIDH 1e7lA 56 :LLCN Number of specific fragments extracted= 2 number of extra gaps= 1 total=98584 # 1jy1A.376.289 read from T0547.t06.many.frag # found chain 1jy1A in training set Warning: unaligning (T0547)E376 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jy1A)S434 T0547 377 :YLHDSIDH 1jy1A 435 :VPLYLIYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=98585 # 7odcA.377.350 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 377 :YLHDSIDHL 7odcA 351 :YSSSIWGPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=98586 # 1knwA.377.332 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 377 :YLHDSIDHL 1knwA 333 :VETVVAGPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98587 # 1lst.377.134 read from T0547.t06.many.frag # found chain 1lst in training set T0547 377 :YLHDSIDHL 1lst 135 :VDVVAYANQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=98588 # 1to6A.377.254 read from T0547.t06.many.frag # found chain 1to6A in template set Warning: unaligning (T0547)H379 (1to6A)A257 because P (beta_P) conformation "forbidden" or filtered. T0547 377 :YL 1to6A 255 :AQ T0547 380 :DSIDHL 1to6A 258 :SIVSGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=98590 # 1xhnA.377.65 read from T0547.t06.many.frag # found chain 1xhnA in template set T0547 377 :YLHDSIDHL 1xhnA 66 :VPYFYLSPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98591 # 1fjgJ.377.69 read from T0547.t06.many.frag # found chain 1fjgJ in template set Warning: unaligning (T0547)H379 (1fjgJ)V72 because S (epsilon) conformation "forbidden" or filtered. T0547 377 :YL 1fjgJ 70 :RL T0547 380 :DSIDHL 1fjgJ 73 :DIINPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=98593 # 1l1lA.377.541 read from T0547.t06.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)S381 (1l1lA)T546 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1l1lA)K548 because E (beta_S) conformation "forbidden" or filtered. T0547 377 :YLHD 1l1lA 542 :IKHT T0547 382 :I 1l1lA 547 :V T0547 384 :HL 1l1lA 549 :PS Number of specific fragments extracted= 3 number of extra gaps= 2 total=98596 # 1atg.377.137 read from T0547.t06.many.frag # found chain 1atg in training set Warning: unaligning (T0547)Y377 (1atg)E139 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1atg)S146 because Y (epsilon') conformation "forbidden" or filtered. T0547 378 :LHDSID 1atg 140 :RIVEAN T0547 385 :L 1atg 147 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=98598 # 1vqvA.377.203 read from T0547.t06.many.frag # found chain 1vqvA in template set Warning: unaligning (T0547)I382 (1vqvA)S209 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1vqvA)G211 because S (epsilon) conformation "forbidden" or filtered. T0547 377 :YLHDS 1vqvA 204 :ASMDI T0547 383 :D 1vqvA 210 :D T0547 385 :L 1vqvA 212 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=98601 # 1no7A.377.39 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)D383 (1no7A)G496 because S (epsilon) conformation "forbidden" or filtered. T0547 377 :YLHDSI 1no7A 490 :YVAAPA T0547 384 :HL 1no7A 497 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=98603 # 1qd6C.377.144 read from T0547.t06.many.frag # found chain 1qd6C in template set Warning: unaligning (T0547)H379 (1qd6C)W176 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1qd6C)G180 because S (epsilon) conformation "forbidden" or filtered. T0547 377 :YL 1qd6C 174 :KP T0547 380 :DSI 1qd6C 177 :YVV T0547 384 :HL 1qd6C 181 :NT Number of specific fragments extracted= 3 number of extra gaps= 2 total=98606 # 1hqz1.377.43 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)Y377 (1hqz1)E44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 378 :LH 1hqz1 45 :PE T0547 381 :SIDHL 1hqz1 48 :TGSSF Number of specific fragments extracted= 2 number of extra gaps= 2 total=98608 # 2d0oA.377.382 read from T0547.t06.many.frag # found chain 2d0oA in template set T0547 377 :YLHDSIDHL 2d0oA 383 :IDVQIGGAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98609 # 1e0tA.377.371 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)D380 (1e0tA)V375 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)T378 Warning: unaligning (T0547)D383 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)T378 T0547 377 :YLH 1e0tA 372 :PLI T0547 381 :S 1e0tA 376 :V T0547 384 :HL 1e0tA 379 :QG Number of specific fragments extracted= 3 number of extra gaps= 2 total=98612 # 1kmvA.377.84 read from T0547.t06.many.frag # found chain 1kmvA in training set Warning: unaligning (T0547)D380 (1kmvA)F88 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1kmvA)S92 because Y (epsilon') conformation "forbidden" or filtered. T0547 377 :YLH 1kmvA 85 :GAH T0547 381 :SID 1kmvA 89 :LSR T0547 385 :L 1kmvA 93 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=98615 # 1qmeA.377.646 read from T0547.t06.many.frag # found chain 1qmeA in template set Warning: unaligning (T0547)S381 (1qmeA)M699 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1qmeA)G701 because T (delta_L) conformation "forbidden" or filtered. T0547 377 :YLHD 1qmeA 695 :EVPD T0547 382 :I 1qmeA 700 :Y T0547 384 :HL 1qmeA 702 :WT Number of specific fragments extracted= 3 number of extra gaps= 2 total=98618 # 1xv5A.377.169 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)D380 (1xv5A)Y1172 because P (beta_P) conformation "forbidden" or filtered. T0547 377 :YLH 1xv5A 1169 :PTV T0547 381 :SIDHL 1xv5A 1173 :NFQPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=98620 # 1rkuA.377.145 read from T0547.t06.many.frag # found chain 1rkuA in training set Warning: unaligning (T0547)D383 (1rkuA)G151 because Y (epsilon') conformation "forbidden" or filtered. T0547 377 :YLHDSI 1rkuA 145 :YRVIAA T0547 384 :HL 1rkuA 152 :DS Number of specific fragments extracted= 2 number of extra gaps= 1 total=98622 # 2bkxA.377.149 read from T0547.t06.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D380 (2bkxA)H153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (2bkxA)V154 because P (beta_P) conformation "forbidden" or filtered. T0547 377 :YLH 2bkxA 150 :SRT T0547 382 :IDHL 2bkxA 155 :VTLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=98624 # 1g6sA.377.398 read from T0547.t06.many.frag # found chain 1g6sA in training set T0547 377 :YLHDSIDHL 1g6sA 399 :TPVTILDPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98625 # 1m15A.377.165 read from T0547.t06.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)H379 (1m15A)Y168 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1m15A)G172 because T (delta_L) conformation "forbidden" or filtered. T0547 377 :YL 1m15A 166 :TY T0547 380 :DSI 1m15A 169 :PLT T0547 384 :HL 1m15A 173 :MS Number of specific fragments extracted= 3 number of extra gaps= 2 total=98628 # 1jayA.377.148 read from T0547.t06.many.frag # found chain 1jayA in training set Warning: unaligning (T0547)H379 (1jayA)V151 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1jayA)G155 because Y (epsilon') conformation "forbidden" or filtered. T0547 377 :YL 1jayA 149 :WD T0547 380 :DSI 1jayA 152 :PVC T0547 384 :HL 1jayA 156 :DD Number of specific fragments extracted= 3 number of extra gaps= 2 total=98631 # 1vk1A.377.173 read from T0547.t06.many.frag # found chain 1vk1A in training set T0547 377 :YLHDSIDHL 1vk1A 174 :IELVYYGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98632 # 1y93A.377.75 read from T0547.t06.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)D380 (1y93A)H183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1y93A)G186 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L385 (1y93A)G188 because Y (epsilon') conformation "forbidden" or filtered. T0547 377 :YLH 1y93A 180 :ILA T0547 381 :SI 1y93A 184 :AF T0547 384 :H 1y93A 187 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=98635 # 1vqoB.377.162 read from T0547.t06.many.frag # found chain 1vqoB in template set T0547 377 :YLHDSIDHL 1vqoB 162 :METRVGGGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=98636 # 1i6lA.377.201 read from T0547.t06.many.frag # found chain 1i6lA in training set Warning: unaligning (T0547)D380 (1i6lA)T205 because P (beta_P) conformation "forbidden" or filtered. T0547 377 :YLH 1i6lA 202 :AYI T0547 381 :SIDHL 1i6lA 206 :LLDDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=98638 # 1zbsA.377.261 read from T0547.t06.many.frag # found chain 1zbsA in template set T0547 377 :YLHDSIDHL 1zbsA 262 :TLGSVLQSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=98639 # 1sx5A.377.101 read from T0547.t06.many.frag # found chain 1sx5A in training set T0547 377 :YLHDSIDHL 1sx5A 103 :IKFTLGGYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=98640 # 1t1uA.377.456 read from T0547.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1t1uA)D460 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)D460 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)I462 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)I462 T0547 377 :Y 1t1uA 458 :R T0547 382 :IDHL 1t1uA 463 :RSAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=98642 # 1qw9A.377.292 read from T0547.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0547)Y377 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)D293 Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E294 Warning: unaligning (T0547)D380 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)V297 Warning: unaligning (T0547)S381 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)V297 T0547 379 :H 1qw9A 295 :W T0547 382 :IDHL 1qw9A 298 :WYHS Number of specific fragments extracted= 2 number of extra gaps= 2 total=98644 # 7odcA.378.351 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 378 :LHDSIDHLE 7odcA 352 :SSSIWGPTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=98645 # 1knwA.378.333 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 378 :LHDSIDHLE 1knwA 334 :ETVVAGPLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=98646 # 1xhnA.378.66 read from T0547.t06.many.frag # found chain 1xhnA in template set T0547 378 :LHDSIDHLE 1xhnA 67 :PYFYLSPLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=98647 # 1to6A.378.255 read from T0547.t06.many.frag # found chain 1to6A in template set Warning: unaligning (T0547)L378 (1to6A)Q256 because L (left) conformation "forbidden" or filtered. T0547 379 :HDSIDHLE 1to6A 257 :ASIVSGID Number of specific fragments extracted= 1 number of extra gaps= 1 total=98648 # 1lst.378.135 read from T0547.t06.many.frag # found chain 1lst in training set Warning: unaligning (T0547)H384 (1lst)N142 because Y (epsilon') conformation "forbidden" or filtered. T0547 378 :LHDSID 1lst 136 :DVVAYA T0547 385 :LE 1lst 143 :QD Number of specific fragments extracted= 2 number of extra gaps= 1 total=98650 # 1fjgJ.378.70 read from T0547.t06.many.frag # found chain 1fjgJ in template set Warning: unaligning (T0547)H379 (1fjgJ)V72 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1fjgJ)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E386 (1fjgJ)R79 because T (delta_L) conformation "forbidden" or filtered. T0547 378 :L 1fjgJ 71 :L T0547 380 :DSI 1fjgJ 73 :DII T0547 384 :HL 1fjgJ 77 :PN Number of specific fragments extracted= 3 number of extra gaps= 3 total=98653 # 1vqvA.378.204 read from T0547.t06.many.frag # found chain 1vqvA in template set Warning: unaligning (T0547)H379 (1vqvA)M206 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1vqvA)G211 because S (epsilon) conformation "forbidden" or filtered. T0547 378 :L 1vqvA 205 :S T0547 380 :DSID 1vqvA 207 :DISD T0547 385 :LE 1vqvA 212 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=98656 # 1vk1A.378.174 read from T0547.t06.many.frag # found chain 1vk1A in training set T0547 378 :LHDSIDHLE 1vk1A 175 :ELVYYGLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98657 # 1atg.378.138 read from T0547.t06.many.frag # found chain 1atg in training set T0547 378 :LHDSIDHLE 1atg 140 :RIVEANSVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=98658 # 1no7A.378.40 read from T0547.t06.many.frag # found chain 1no7A in template set T0547 378 :LHDSIDHLE 1no7A 491 :VAAPAGPAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98659 # 1kmvA.378.85 read from T0547.t06.many.frag # found chain 1kmvA in training set Warning: unaligning (T0547)H384 (1kmvA)S92 because Y (epsilon') conformation "forbidden" or filtered. T0547 378 :LHDSID 1kmvA 86 :AHFLSR T0547 385 :LE 1kmvA 93 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=98661 # 2d0oA.378.383 read from T0547.t06.many.frag # found chain 2d0oA in template set Warning: unaligning (T0547)S381 (2d0oA)I387 because P (beta_P) conformation "forbidden" or filtered. T0547 378 :LHD 2d0oA 384 :DVQ T0547 382 :IDHLE 2d0oA 388 :GGAEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=98663 # 1twuA.378.14 read from T0547.t06.many.frag # found chain 1twuA in template set T0547 378 :LHDSIDHLE 1twuA 15 :IARPTGQLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98664 # 1l1lA.378.542 read from T0547.t06.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)H379 (1l1lA)H544 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1l1lA)T546 because Y (epsilon') conformation "forbidden" or filtered. T0547 378 :L 1l1lA 543 :K T0547 380 :D 1l1lA 545 :T T0547 382 :IDHLE 1l1lA 547 :VKPSG Number of specific fragments extracted= 3 number of extra gaps= 2 total=98667 # 1qd6C.378.145 read from T0547.t06.many.frag # found chain 1qd6C in template set Warning: unaligning (T0547)H379 (1qd6C)W176 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1qd6C)G180 because S (epsilon) conformation "forbidden" or filtered. T0547 378 :L 1qd6C 175 :P T0547 380 :DSI 1qd6C 177 :YVV T0547 384 :HLE 1qd6C 181 :NTD Number of specific fragments extracted= 3 number of extra gaps= 2 total=98670 # 1hqz1.378.44 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)D380 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 378 :LH 1hqz1 45 :PE T0547 381 :SIDHLE 1hqz1 48 :TGSSFH Number of specific fragments extracted= 2 number of extra gaps= 1 total=98672 # 1g6sA.378.399 read from T0547.t06.many.frag # found chain 1g6sA in training set Warning: unaligning (T0547)D380 (1g6sA)T402 because E (beta_S) conformation "forbidden" or filtered. T0547 378 :LH 1g6sA 400 :PV T0547 381 :SIDHLE 1g6sA 403 :ILDPKC Number of specific fragments extracted= 2 number of extra gaps= 1 total=98674 # 1zbsA.378.262 read from T0547.t06.many.frag # found chain 1zbsA in template set T0547 378 :LHDSIDHLE 1zbsA 263 :LGSVLQSPM Number of specific fragments extracted= 1 number of extra gaps= 0 total=98675 # 1qmeA.378.647 read from T0547.t06.many.frag # found chain 1qmeA in template set Warning: unaligning (T0547)D383 (1qmeA)G701 because T (delta_L) conformation "forbidden" or filtered. T0547 378 :LHDSI 1qmeA 696 :VPDMY T0547 384 :HLE 1qmeA 702 :WTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=98677 # 1lb3A.378.84 read from T0547.t06.many.frag # found chain 1lb3A in training set T0547 378 :LHDSIDHLE 1lb3A 89 :SQDEWGKTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=98678 # 2bkxA.378.150 read from T0547.t06.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D383 (2bkxA)T156 because P (beta_P) conformation "forbidden" or filtered. T0547 378 :LHDSI 2bkxA 151 :RTHVV T0547 384 :HLE 2bkxA 157 :LNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=98680 # 1xubA.378.142 read from T0547.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0547)D380 (1xubA)T125 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1xubA)G128 because L (left) conformation "forbidden" or filtered. T0547 378 :LH 1xubA 123 :TW T0547 381 :SI 1xubA 126 :AL T0547 384 :HLE 1xubA 129 :RDA Number of specific fragments extracted= 3 number of extra gaps= 2 total=98683 # 1t1uA.378.457 read from T0547.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)L378 because of BadResidue code BAD_PEPTIDE in next template residue (1t1uA)D460 Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)D460 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)I462 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)I462 T0547 382 :IDHLE 1t1uA 463 :RSATP Number of specific fragments extracted= 1 number of extra gaps= 1 total=98684 # 1e0tA.378.372 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)T378 Warning: unaligning (T0547)D383 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)T378 Warning: unaligning (T0547)E386 (1e0tA)G381 because T (delta_L) conformation "forbidden" or filtered. T0547 378 :LHDS 1e0tA 373 :LIVV T0547 384 :HL 1e0tA 379 :QG Number of specific fragments extracted= 2 number of extra gaps= 2 total=98686 # 1m15A.378.166 read from T0547.t06.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)D383 (1m15A)G172 because T (delta_L) conformation "forbidden" or filtered. T0547 378 :LHDSI 1m15A 167 :YYPLT T0547 384 :HLE 1m15A 173 :MSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=98688 # 1rkuA.378.146 read from T0547.t06.many.frag # found chain 1rkuA in training set Warning: unaligning (T0547)D380 (1rkuA)I148 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1rkuA)G151 because Y (epsilon') conformation "forbidden" or filtered. T0547 378 :LH 1rkuA 146 :RV T0547 381 :SI 1rkuA 149 :AA T0547 384 :HLE 1rkuA 152 :DSY Number of specific fragments extracted= 3 number of extra gaps= 2 total=98691 # 1xv5A.378.170 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)D380 (1xv5A)Y1172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I382 (1xv5A)F1174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E386 (1xv5A)M1178 because E (beta_S) conformation "forbidden" or filtered. T0547 378 :LH 1xv5A 1170 :TV T0547 381 :S 1xv5A 1173 :N T0547 383 :DHL 1xv5A 1175 :QPP Number of specific fragments extracted= 3 number of extra gaps= 3 total=98694 # 1vqoB.378.163 read from T0547.t06.many.frag # found chain 1vqoB in template set Warning: unaligning (T0547)D383 (1vqoB)G168 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1vqoB)G169 because S (epsilon) conformation "forbidden" or filtered. T0547 378 :LHDSI 1vqoB 163 :ETRVG T0547 385 :LE 1vqoB 170 :SV Number of specific fragments extracted= 2 number of extra gaps= 1 total=98696 # 1e7lA.378.52 read from T0547.t06.many.frag # found chain 1e7lA in training set T0547 378 :LHDSIDHLE 1e7lA 53 :VRGLLCNLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=98697 # 1jg5A.378.44 read from T0547.t06.many.frag # found chain 1jg5A in template set Warning: unaligning (T0547)D380 (1jg5A)Y47 because Y (epsilon') conformation "forbidden" or filtered. T0547 378 :LH 1jg5A 45 :EY T0547 381 :SIDHLE 1jg5A 48 :VNDPPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=98699 # 7odcA.379.352 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D383 (7odcA)G357 because P (beta_P) conformation "forbidden" or filtered. T0547 379 :HDSI 7odcA 353 :SSIW T0547 384 :HLES 7odcA 358 :PTCD Number of specific fragments extracted= 2 number of extra gaps= 1 total=98701 # 1knwA.379.334 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)D383 (1knwA)G339 because P (beta_P) conformation "forbidden" or filtered. T0547 379 :HDSI 1knwA 335 :TVVA T0547 384 :HLES 1knwA 340 :PLCE Number of specific fragments extracted= 2 number of extra gaps= 1 total=98703 # 1xhnA.379.67 read from T0547.t06.many.frag # found chain 1xhnA in template set T0547 379 :HDSIDHLES 1xhnA 68 :YFYLSPLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98704 # 1to6A.379.256 read from T0547.t06.many.frag # found chain 1to6A in template set T0547 379 :HDSIDHLES 1to6A 257 :ASIVSGIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=98705 # 1lst.379.136 read from T0547.t06.many.frag # found chain 1lst in training set Warning: unaligning (T0547)H379 (1lst)V137 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1lst)N142 because Y (epsilon') conformation "forbidden" or filtered. T0547 380 :DSID 1lst 138 :VAYA T0547 385 :LES 1lst 143 :QDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=98707 # 1vk1A.379.175 read from T0547.t06.many.frag # found chain 1vk1A in training set T0547 379 :HDSIDHLES 1vk1A 176 :LVYYGLKED Number of specific fragments extracted= 1 number of extra gaps= 0 total=98708 # 1fjgJ.379.71 read from T0547.t06.many.frag # found chain 1fjgJ in template set Warning: unaligning (T0547)D383 (1fjgJ)N76 because L (left) conformation "forbidden" or filtered. T0547 379 :HDSI 1fjgJ 72 :VDII T0547 384 :HLES 1fjgJ 77 :PNRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=98710 # 1lb3A.379.85 read from T0547.t06.many.frag # found chain 1lb3A in training set Warning: unaligning (T0547)I382 (1lb3A)W93 because G (3-10) conformation "forbidden" or filtered. T0547 379 :HDS 1lb3A 90 :QDE T0547 383 :DHLES 1lb3A 94 :GKTQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=98712 # 1kmvA.379.86 read from T0547.t06.many.frag # found chain 1kmvA in training set Warning: unaligning (T0547)H384 (1kmvA)S92 because Y (epsilon') conformation "forbidden" or filtered. T0547 379 :HDSID 1kmvA 87 :HFLSR T0547 385 :LES 1kmvA 93 :LDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=98714 # 1atg.379.139 read from T0547.t06.many.frag # found chain 1atg in training set Warning: unaligning (T0547)D380 (1atg)V142 because E (beta_S) conformation "forbidden" or filtered. T0547 379 :H 1atg 141 :I T0547 381 :SIDHLES 1atg 143 :EANSVGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=98716 # 2d0oA.379.384 read from T0547.t06.many.frag # found chain 2d0oA in template set T0547 379 :HDSIDHLES 2d0oA 385 :VQIGGAEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98717 # 1twuA.379.15 read from T0547.t06.many.frag # found chain 1twuA in template set Warning: unaligning (T0547)D380 (1twuA)R17 because E (beta_S) conformation "forbidden" or filtered. T0547 379 :H 1twuA 16 :A T0547 381 :SIDHLES 1twuA 18 :PTGQLDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=98719 # 1iu8A.379.107 read from T0547.t06.many.frag # found chain 1iu8A in training set T0547 379 :HDSIDHLES 1iu8A 108 :YFATIPTRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98720 # 2bkxA.379.151 read from T0547.t06.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D380 (2bkxA)H153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (2bkxA)T156 because P (beta_P) conformation "forbidden" or filtered. T0547 379 :H 2bkxA 152 :T T0547 381 :SI 2bkxA 154 :VV T0547 384 :HLES 2bkxA 157 :LNEQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=98723 # 1vqvA.379.205 read from T0547.t06.many.frag # found chain 1vqvA in template set T0547 379 :HDSIDHLES 1vqvA 206 :MDISDGLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98724 # 1xubA.379.143 read from T0547.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0547)H379 (1xubA)W124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D380 (1xubA)T125 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1xubA)G128 because L (left) conformation "forbidden" or filtered. T0547 381 :SI 1xubA 126 :AL T0547 384 :HLES 1xubA 129 :RDAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=98726 # 1f74A.379.183 read from T0547.t06.many.frag # found chain 1f74A in training set Warning: unaligning (T0547)H384 (1f74A)F189 because D (zeta) conformation "forbidden" or filtered. T0547 379 :HDSID 1f74A 184 :LIWAG T0547 385 :LES 1f74A 190 :DEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=98728 # 1zbsA.379.263 read from T0547.t06.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)D380 (1zbsA)S265 because Y (epsilon') conformation "forbidden" or filtered. T0547 379 :H 1zbsA 264 :G T0547 381 :SIDHLES 1zbsA 266 :VLQSPME Number of specific fragments extracted= 2 number of extra gaps= 1 total=98730 # 1e0tA.379.373 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)T378 Warning: unaligning (T0547)D383 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)T378 Warning: unaligning (T0547)E386 (1e0tA)G381 because T (delta_L) conformation "forbidden" or filtered. T0547 379 :HDS 1e0tA 374 :IVV T0547 384 :HL 1e0tA 379 :QG T0547 387 :S 1e0tA 382 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=98733 # 1g8mA.379.341 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)D383 (1g8mA)G346 because Y (epsilon') conformation "forbidden" or filtered. T0547 379 :HDSI 1g8mA 342 :VVAP T0547 384 :HLES 1g8mA 347 :YEEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=98735 # 1t1uA.379.458 read from T0547.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)H379 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)D460 Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)I462 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)I462 T0547 382 :IDHLES 1t1uA 463 :RSATPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=98736 # 1qmeA.379.648 read from T0547.t06.many.frag # found chain 1qmeA in template set T0547 379 :HDSIDHLES 1qmeA 697 :PDMYGWTKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98737 # 1no7A.379.41 read from T0547.t06.many.frag # found chain 1no7A in template set T0547 379 :HDSIDHLES 1no7A 492 :AAPAGPAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98738 # 1xbiA.379.74 read from T0547.t06.many.frag # found chain 1xbiA in training set Warning: unaligning (T0547)D380 (1xbiA)A73 because Y (epsilon') conformation "forbidden" or filtered. T0547 379 :H 1xbiA 72 :Y T0547 381 :SIDHLES 1xbiA 74 :YVASKQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=98740 # 1l1lA.379.543 read from T0547.t06.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)D380 (1l1lA)T545 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S381 (1l1lA)T546 because Y (epsilon') conformation "forbidden" or filtered. T0547 379 :H 1l1lA 544 :H T0547 382 :IDHLES 1l1lA 547 :VKPSGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=98742 # 1hqz1.379.45 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)D380 (1hqz1)S47 because Y (epsilon') conformation "forbidden" or filtered. T0547 379 :H 1hqz1 46 :E T0547 381 :SIDHLES 1hqz1 48 :TGSSFHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=98744 # 1cfr.379.137 read from T0547.t06.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)D383 (1cfr)G142 because T (delta_L) conformation "forbidden" or filtered. T0547 379 :HDSI 1cfr 138 :IDIR T0547 384 :HLES 1cfr 143 :RREE Number of specific fragments extracted= 2 number of extra gaps= 1 total=98746 # 1qd6C.379.146 read from T0547.t06.many.frag # found chain 1qd6C in template set Warning: unaligning (T0547)H379 (1qd6C)W176 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1qd6C)G180 because S (epsilon) conformation "forbidden" or filtered. T0547 380 :DSI 1qd6C 177 :YVV T0547 384 :HLES 1qd6C 181 :NTDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=98748 # 1g6sA.379.400 read from T0547.t06.many.frag # found chain 1g6sA in training set T0547 379 :HDSIDHLES 1g6sA 401 :VTILDPKCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=98749 # 1jg5A.379.45 read from T0547.t06.many.frag # found chain 1jg5A in template set Warning: unaligning (T0547)D380 (1jg5A)Y47 because Y (epsilon') conformation "forbidden" or filtered. T0547 379 :H 1jg5A 46 :Y T0547 381 :SIDHLES 1jg5A 48 :VNDPPRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=98751 # 7odcA.380.353 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D380 (7odcA)S354 because E (beta_S) conformation "forbidden" or filtered. T0547 381 :SIDHLESI 7odcA 355 :IWGPTCDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=98752 # 1knwA.380.335 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I382 (1knwA)A338 because Y (epsilon') conformation "forbidden" or filtered. T0547 380 :DS 1knwA 336 :VV T0547 383 :DHLESI 1knwA 339 :GPLCES Number of specific fragments extracted= 2 number of extra gaps= 1 total=98754 # 1xhnA.380.68 read from T0547.t06.many.frag # found chain 1xhnA in template set Warning: unaligning (T0547)E386 (1xhnA)Q75 because P (beta_P) conformation "forbidden" or filtered. T0547 380 :DSIDHL 1xhnA 69 :FYLSPL T0547 387 :SI 1xhnA 76 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=98756 # 1kmvA.380.87 read from T0547.t06.many.frag # found chain 1kmvA in training set Warning: unaligning (T0547)H384 (1kmvA)S92 because Y (epsilon') conformation "forbidden" or filtered. T0547 380 :DSID 1kmvA 88 :FLSR T0547 385 :LESI 1kmvA 93 :LDDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=98758 # 1vk1A.380.176 read from T0547.t06.many.frag # found chain 1vk1A in training set T0547 380 :DSIDHLESI 1vk1A 177 :VYYGLKEDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98759 # 1to6A.380.257 read from T0547.t06.many.frag # found chain 1to6A in template set T0547 380 :DSIDHLESI 1to6A 258 :SIVSGIDTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=98760 # 1lst.380.137 read from T0547.t06.many.frag # found chain 1lst in training set Warning: unaligning (T0547)H384 (1lst)N142 because Y (epsilon') conformation "forbidden" or filtered. T0547 380 :DSID 1lst 138 :VAYA T0547 385 :LESI 1lst 143 :QDLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=98762 # 1lb3A.380.86 read from T0547.t06.many.frag # found chain 1lb3A in training set T0547 380 :DSIDHLESI 1lb3A 91 :DEWGKTQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98763 # 1twuA.380.16 read from T0547.t06.many.frag # found chain 1twuA in template set Warning: unaligning (T0547)S381 (1twuA)P18 because P (beta_P) conformation "forbidden" or filtered. T0547 380 :D 1twuA 17 :R T0547 382 :IDHLESI 1twuA 19 :TGQLDEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=98765 # 1atg.380.140 read from T0547.t06.many.frag # found chain 1atg in training set T0547 380 :DSIDHLESI 1atg 142 :VEANSVGQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98766 # 1fjgJ.380.72 read from T0547.t06.many.frag # found chain 1fjgJ in template set Warning: unaligning (T0547)D383 (1fjgJ)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1fjgJ)P77 because P (beta_P) conformation "forbidden" or filtered. T0547 380 :DSI 1fjgJ 73 :DII T0547 385 :LESI 1fjgJ 78 :NRKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=98768 # 1iu8A.380.108 read from T0547.t06.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)S381 (1iu8A)A110 because P (beta_P) conformation "forbidden" or filtered. T0547 380 :D 1iu8A 109 :F T0547 382 :IDHLESI 1iu8A 111 :TIPTREI Number of specific fragments extracted= 2 number of extra gaps= 1 total=98770 # 2d0oA.380.385 read from T0547.t06.many.frag # found chain 2d0oA in template set T0547 380 :DSIDHLESI 2d0oA 386 :QIGGAEAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98771 # 1f74A.380.184 read from T0547.t06.many.frag # found chain 1f74A in training set Warning: unaligning (T0547)D380 (1f74A)I185 because E (beta_S) conformation "forbidden" or filtered. T0547 381 :SIDHLESI 1f74A 186 :WAGFDEMM Number of specific fragments extracted= 1 number of extra gaps= 1 total=98772 # 2bkxA.380.152 read from T0547.t06.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D380 (2bkxA)H153 because Y (epsilon') conformation "forbidden" or filtered. T0547 381 :SIDHLESI 2bkxA 154 :VVTLNEQT Number of specific fragments extracted= 1 number of extra gaps= 1 total=98773 # 1g8mA.380.342 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 380 :DSIDHLESI 1g8mA 343 :VAPGYEEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98774 # 1t1uA.380.459 read from T0547.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)D380 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)I462 Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)I462 T0547 382 :IDHLESI 1t1uA 463 :RSATPEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=98775 # 1cfr.380.138 read from T0547.t06.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)D383 (1cfr)G142 because T (delta_L) conformation "forbidden" or filtered. T0547 380 :DSI 1cfr 139 :DIR T0547 384 :HLESI 1cfr 143 :RREEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=98777 # 1vqvA.380.206 read from T0547.t06.many.frag # found chain 1vqvA in template set T0547 380 :DSIDHLESI 1vqvA 207 :DISDGLVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98778 # 1e0tA.380.374 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)T378 Warning: unaligning (T0547)D383 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)T378 T0547 380 :DS 1e0tA 375 :VV T0547 384 :HLESI 1e0tA 379 :QGGKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=98780 # 1qmeA.380.649 read from T0547.t06.many.frag # found chain 1qmeA in template set Warning: unaligning (T0547)D383 (1qmeA)G701 because T (delta_L) conformation "forbidden" or filtered. T0547 380 :DSI 1qmeA 698 :DMY T0547 384 :HLESI 1qmeA 702 :WTKET Number of specific fragments extracted= 2 number of extra gaps= 1 total=98782 # 1zbsA.380.264 read from T0547.t06.many.frag # found chain 1zbsA in template set T0547 380 :DSIDHLESI 1zbsA 265 :SVLQSPMEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=98783 # 1tr9A.380.251 read from T0547.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)I382 (1tr9A)G253 because S (epsilon) conformation "forbidden" or filtered. T0547 380 :DS 1tr9A 251 :VM T0547 383 :DHLESI 1tr9A 254 :GPVERS Number of specific fragments extracted= 2 number of extra gaps= 1 total=98785 # 1xbiA.380.75 read from T0547.t06.many.frag # found chain 1xbiA in training set Warning: unaligning (T0547)D380 (1xbiA)A73 because Y (epsilon') conformation "forbidden" or filtered. T0547 381 :SIDHLESI 1xbiA 74 :YVASKQDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=98786 # 1n3lA.380.232 read from T0547.t06.many.frag # found chain 1n3lA in training set T0547 380 :DSIDHLESI 1n3lA 233 :DLLDRKEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=98787 # 1hqz1.380.46 read from T0547.t06.many.frag # found chain 1hqz1 in template set T0547 380 :DSIDHLESI 1hqz1 47 :STGSSFHDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=98788 # 1h5uA.380.708 read from T0547.t06.many.frag # found chain 1h5uA in template set T0547 380 :DSIDHLESI 1h5uA 709 :FIFGMRVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=98789 # 1xubA.380.144 read from T0547.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0547)D380 (1xubA)T125 because Y (epsilon') conformation "forbidden" or filtered. T0547 381 :SIDHLESI 1xubA 126 :ALGRDAEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=98790 # 1xrkA.380.10 read from T0547.t06.many.frag # found chain 1xrkA in training set T0547 380 :DSIDHLESI 1xrkA 11 :LTARDVAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98791 # 1jy1A.380.293 read from T0547.t06.many.frag # found chain 1jy1A in training set Warning: unaligning (T0547)D383 (1jy1A)Y441 because E (beta_S) conformation "forbidden" or filtered. T0547 380 :DSI 1jy1A 438 :YLI T0547 384 :HLESI 1jy1A 442 :PSVEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=98793 # 1knwA.381.336 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 381 :SIDHLESIL 1knwA 337 :VAGPLCESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=98794 # 7odcA.381.354 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E386 (7odcA)C360 because N (gamma') conformation "forbidden" or filtered. T0547 381 :SIDHL 7odcA 355 :IWGPT T0547 387 :SIL 7odcA 361 :DGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=98796 # 1xhnA.381.69 read from T0547.t06.many.frag # found chain 1xhnA in template set T0547 381 :SIDHLESIL 1xhnA 70 :YLSPLQLSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=98797 # 1kmvA.381.88 read from T0547.t06.many.frag # found chain 1kmvA in training set Warning: unaligning (T0547)H384 (1kmvA)S92 because Y (epsilon') conformation "forbidden" or filtered. T0547 381 :SID 1kmvA 89 :LSR T0547 385 :LESIL 1kmvA 93 :LDDAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=98799 # 1vk1A.381.177 read from T0547.t06.many.frag # found chain 1vk1A in training set T0547 381 :SIDHLESIL 1vk1A 178 :YYGLKEDAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98800 # 1lst.381.138 read from T0547.t06.many.frag # found chain 1lst in training set Warning: unaligning (T0547)H384 (1lst)N142 because Y (epsilon') conformation "forbidden" or filtered. T0547 381 :SID 1lst 139 :AYA T0547 385 :LESIL 1lst 143 :QDLIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=98802 # 1lb3A.381.87 read from T0547.t06.many.frag # found chain 1lb3A in training set Warning: unaligning (T0547)D383 (1lb3A)G94 because S (epsilon) conformation "forbidden" or filtered. T0547 381 :SI 1lb3A 92 :EW T0547 384 :HLESIL 1lb3A 95 :KTQEAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=98804 # 1to6A.381.258 read from T0547.t06.many.frag # found chain 1to6A in template set T0547 381 :SIDHLESIL 1to6A 259 :IVSGIDTCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98805 # 1iu8A.381.109 read from T0547.t06.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)I382 (1iu8A)T111 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D383 (1iu8A)I112 because P (beta_P) conformation "forbidden" or filtered. T0547 381 :S 1iu8A 110 :A T0547 384 :HLESIL 1iu8A 113 :PTREIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=98807 # 1atg.381.141 read from T0547.t06.many.frag # found chain 1atg in training set Warning: unaligning (T0547)H384 (1atg)S146 because Y (epsilon') conformation "forbidden" or filtered. T0547 381 :SID 1atg 143 :EAN T0547 385 :LESIL 1atg 147 :VGQAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=98809 # 1twuA.381.17 read from T0547.t06.many.frag # found chain 1twuA in template set Warning: unaligning (T0547)S381 (1twuA)P18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H384 (1twuA)Q21 because D (zeta) conformation "forbidden" or filtered. T0547 382 :ID 1twuA 19 :TG T0547 385 :LESIL 1twuA 22 :LDEII Number of specific fragments extracted= 2 number of extra gaps= 2 total=98811 # 1f74A.381.185 read from T0547.t06.many.frag # found chain 1f74A in training set Warning: unaligning (T0547)S387 (1f74A)M192 because G (3-10) conformation "forbidden" or filtered. T0547 381 :SIDHLE 1f74A 186 :WAGFDE T0547 388 :IL 1f74A 193 :ML Number of specific fragments extracted= 2 number of extra gaps= 1 total=98813 # 1t1uA.381.460 read from T0547.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)S381 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)I462 T0547 382 :IDHLESIL 1t1uA 463 :RSATPEAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=98814 # 2bkxA.381.153 read from T0547.t06.many.frag # found chain 2bkxA in training set T0547 381 :SIDHLESIL 2bkxA 154 :VVTLNEQTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=98815 # 1tr9A.381.252 read from T0547.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)I382 (1tr9A)G253 because S (epsilon) conformation "forbidden" or filtered. T0547 381 :S 1tr9A 252 :M T0547 383 :DHLESIL 1tr9A 254 :GPVERSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=98817 # 1fjgJ.381.73 read from T0547.t06.many.frag # found chain 1fjgJ in template set Warning: unaligning (T0547)D383 (1fjgJ)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E386 (1fjgJ)R79 because T (delta_L) conformation "forbidden" or filtered. T0547 381 :SI 1fjgJ 74 :II T0547 384 :HL 1fjgJ 77 :PN T0547 387 :SIL 1fjgJ 80 :KTI Number of specific fragments extracted= 3 number of extra gaps= 2 total=98820 # 1cfr.381.139 read from T0547.t06.many.frag # found chain 1cfr in template set T0547 381 :SIDHLESIL 1cfr 140 :IRGRREELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98821 # 1qmeA.381.650 read from T0547.t06.many.frag # found chain 1qmeA in template set T0547 381 :SIDHLESIL 1qmeA 699 :MYGWTKETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98822 # 1n3lA.381.233 read from T0547.t06.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)I382 (1n3lA)L235 because G (3-10) conformation "forbidden" or filtered. T0547 381 :S 1n3lA 234 :L T0547 383 :DHLESIL 1n3lA 236 :DRKEDVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=98824 # 1h5uA.381.709 read from T0547.t06.many.frag # found chain 1h5uA in template set T0547 381 :SIDHLESIL 1h5uA 710 :IFGMRVEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=98825 # 1a4iA.381.123 read from T0547.t06.many.frag # found chain 1a4iA in training set T0547 381 :SIDHLESIL 1a4iA 124 :VDGLTSINA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98826 # 1g8mA.381.343 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)S381 (1g8mA)A344 because Y (epsilon') conformation "forbidden" or filtered. T0547 382 :IDHLESIL 1g8mA 345 :PGYEEEAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=98827 # 1s3rA.381.363 read from T0547.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0547)D383 (1s3rA)G363 because Y (epsilon') conformation "forbidden" or filtered. T0547 381 :SI 1s3rA 361 :IT T0547 384 :HLESIL 1s3rA 364 :NIDTLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=98829 # 1xubA.381.145 read from T0547.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0547)D383 (1xubA)G128 because L (left) conformation "forbidden" or filtered. T0547 381 :SI 1xubA 126 :AL T0547 384 :HLESIL 1xubA 129 :RDAELL Number of specific fragments extracted= 2 number of extra gaps= 1 total=98831 # 2d0oA.381.386 read from T0547.t06.many.frag # found chain 2d0oA in template set T0547 381 :SIDHLESIL 2d0oA 387 :IGGAEAEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98832 # 1s2oA.381.182 read from T0547.t06.many.frag # found chain 1s2oA in training set Warning: unaligning (T0547)D383 (1s2oA)G185 because Y (epsilon') conformation "forbidden" or filtered. T0547 381 :SI 1s2oA 183 :VC T0547 384 :HLESIL 1s2oA 186 :DSGNDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=98834 # 1nnfA.381.170 read from T0547.t06.many.frag # found chain 1nnfA in training set T0547 381 :SIDHLESIL 1nnfA 171 :LYAKNSVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98835 # 1zymA.381.227 read from T0547.t06.many.frag # found chain 1zymA in template set Warning: unaligning (T0547)D383 (1zymA)N230 because L (left) conformation "forbidden" or filtered. T0547 381 :SI 1zymA 228 :YV T0547 384 :HLESIL 1zymA 231 :PTNEVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=98837 # 1e0tA.381.375 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)T378 Warning: unaligning (T0547)D383 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)T378 T0547 381 :S 1e0tA 376 :V T0547 384 :HLESIL 1e0tA 379 :QGGKSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=98839 # 1i4wA.381.181 read from T0547.t06.many.frag # found chain 1i4wA in template set T0547 381 :SIDHLESIL 1i4wA 170 :LWMPSTTAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=98840 # 1knwA.382.337 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 382 :IDHLESILT 1knwA 338 :AGPLCESGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98841 # 7odcA.382.355 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D383 (7odcA)G357 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E386 (7odcA)C360 because N (gamma') conformation "forbidden" or filtered. T0547 382 :I 7odcA 356 :W T0547 384 :HL 7odcA 358 :PT T0547 387 :SILT 7odcA 361 :DGLD Number of specific fragments extracted= 3 number of extra gaps= 2 total=98844 # 1xhnA.382.70 read from T0547.t06.many.frag # found chain 1xhnA in template set T0547 382 :IDHLESILT 1xhnA 71 :LSPLQLSVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=98845 # 1kmvA.382.89 read from T0547.t06.many.frag # found chain 1kmvA in training set T0547 382 :IDHLESILT 1kmvA 90 :SRSLDDALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98846 # 1atg.382.142 read from T0547.t06.many.frag # found chain 1atg in training set Warning: unaligning (T0547)H384 (1atg)S146 because Y (epsilon') conformation "forbidden" or filtered. T0547 382 :ID 1atg 144 :AN T0547 385 :LESILT 1atg 147 :VGQAHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=98848 # 1lst.382.139 read from T0547.t06.many.frag # found chain 1lst in training set Warning: unaligning (T0547)H384 (1lst)N142 because Y (epsilon') conformation "forbidden" or filtered. T0547 382 :ID 1lst 140 :YA T0547 385 :LESILT 1lst 143 :QDLIYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=98850 # 1vk1A.382.178 read from T0547.t06.many.frag # found chain 1vk1A in training set T0547 382 :IDHLESILT 1vk1A 179 :YGLKEDAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98851 # 1iu8A.382.110 read from T0547.t06.many.frag # found chain 1iu8A in training set Warning: unaligning (T0547)I382 (1iu8A)T111 because G (3-10) conformation "forbidden" or filtered. T0547 383 :DHLESILT 1iu8A 112 :IPTREIVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=98852 # 1lb3A.382.88 read from T0547.t06.many.frag # found chain 1lb3A in training set T0547 382 :IDHLESILT 1lb3A 93 :WGKTQEAME Number of specific fragments extracted= 1 number of extra gaps= 0 total=98853 # 1t1uA.382.461 read from T0547.t06.many.frag # found chain 1t1uA in template set T0547 382 :IDHLESILT 1t1uA 463 :RSATPEALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98854 # 1twuA.382.18 read from T0547.t06.many.frag # found chain 1twuA in template set Warning: unaligning (T0547)H384 (1twuA)Q21 because D (zeta) conformation "forbidden" or filtered. T0547 382 :ID 1twuA 19 :TG T0547 385 :LESILT 1twuA 22 :LDEIIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=98856 # 1g8mA.382.344 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 382 :IDHLESILT 1g8mA 345 :PGYEEEALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98857 # 1zymA.382.228 read from T0547.t06.many.frag # found chain 1zymA in template set Warning: unaligning (T0547)H384 (1zymA)P231 because P (beta_P) conformation "forbidden" or filtered. T0547 382 :ID 1zymA 229 :VN T0547 385 :LESILT 1zymA 232 :TNEVID Number of specific fragments extracted= 2 number of extra gaps= 1 total=98859 # 1n3lA.382.234 read from T0547.t06.many.frag # found chain 1n3lA in training set T0547 382 :IDHLESILT 1n3lA 235 :LDRKEDVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98860 # 1to6A.382.259 read from T0547.t06.many.frag # found chain 1to6A in template set T0547 382 :IDHLESILT 1to6A 260 :VSGIDTCLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98861 # 1nnfA.382.171 read from T0547.t06.many.frag # found chain 1nnfA in training set T0547 382 :IDHLESILT 1nnfA 172 :YAKNSVALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=98862 # 2bkxA.382.154 read from T0547.t06.many.frag # found chain 2bkxA in training set Warning: unaligning (T0547)D383 (2bkxA)T156 because P (beta_P) conformation "forbidden" or filtered. T0547 382 :I 2bkxA 155 :V T0547 384 :HLESILT 2bkxA 157 :LNEQTRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=98864 # 1f74A.382.186 read from T0547.t06.many.frag # found chain 1f74A in training set Warning: unaligning (T0547)H384 (1f74A)F189 because D (zeta) conformation "forbidden" or filtered. T0547 382 :ID 1f74A 187 :AG T0547 385 :LESILT 1f74A 190 :DEMMLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=98866 # 1s3rA.382.364 read from T0547.t06.many.frag # found chain 1s3rA in template set T0547 382 :IDHLESILT 1s3rA 362 :TGNIDTLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98867 1ev7A expands to /projects/compbio/data/pdb/1ev7.pdb.gz 1ev7A:# 1ev7A.382.174 read from T0547.t06.many.frag # adding 1ev7A to template set # found chain 1ev7A in template set T0547 382 :IDHLESILT 1ev7A 175 :LHIPGDVRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98868 # 1fjgJ.382.74 read from T0547.t06.many.frag # found chain 1fjgJ in template set T0547 382 :IDHLESILT 1fjgJ 75 :INPNRKTIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98869 # 1tr9A.382.253 read from T0547.t06.many.frag # found chain 1tr9A in training set T0547 382 :IDHLESILT 1tr9A 253 :GGPVERSHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=98870 # 1uzbA.382.427 read from T0547.t06.many.frag # found chain 1uzbA in template set T0547 382 :IDHLESILT 1uzbA 428 :VKDFAEALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98871 # 1qmeA.382.651 read from T0547.t06.many.frag # found chain 1qmeA in template set T0547 382 :IDHLESILT 1qmeA 700 :YGWTKETAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98872 # 1a4iA.382.124 read from T0547.t06.many.frag # found chain 1a4iA in training set Warning: unaligning (T0547)D383 (1a4iA)G126 because L (left) conformation "forbidden" or filtered. T0547 382 :I 1a4iA 125 :D T0547 384 :HLESILT 1a4iA 127 :LTSINAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=98874 # 1xubA.382.146 read from T0547.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0547)D383 (1xubA)G128 because L (left) conformation "forbidden" or filtered. T0547 382 :I 1xubA 127 :L T0547 384 :HLESILT 1xubA 129 :RDAELLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=98876 # 1xrkA.382.12 read from T0547.t06.many.frag # found chain 1xrkA in training set T0547 382 :IDHLESILT 1xrkA 13 :ARDVAEAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98877 # 1cfr.382.140 read from T0547.t06.many.frag # found chain 1cfr in template set T0547 382 :IDHLESILT 1cfr 141 :RGRREELKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=98878 # 1gtkA.382.148 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)D383 (1gtkA)G150 because S (epsilon) conformation "forbidden" or filtered. T0547 382 :I 1gtkA 149 :R T0547 384 :HLESILT 1gtkA 151 :NVGTRLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=98880 # 1e0tA.382.376 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)I382 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)T378 Warning: unaligning (T0547)D383 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)T378 Warning: unaligning (T0547)E386 (1e0tA)G381 because T (delta_L) conformation "forbidden" or filtered. T0547 384 :HL 1e0tA 379 :QG T0547 387 :SILT 1e0tA 382 :KSAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=98882 # 1knwA.383.338 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)H384 (1knwA)P340 because G (3-10) conformation "forbidden" or filtered. T0547 383 :D 1knwA 339 :G T0547 385 :LESILTL 1knwA 341 :LCESGDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=98884 # 7odcA.383.356 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 383 :DHLESILTL 7odcA 357 :GPTCDGLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=98885 # 1xhnA.383.71 read from T0547.t06.many.frag # found chain 1xhnA in template set Warning: unaligning (T0547)D383 (1xhnA)S72 because E (beta_S) conformation "forbidden" or filtered. T0547 384 :HLESILTL 1xhnA 73 :PLQLSVSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=98886 # 1atg.383.143 read from T0547.t06.many.frag # found chain 1atg in training set Warning: unaligning (T0547)H384 (1atg)S146 because Y (epsilon') conformation "forbidden" or filtered. T0547 383 :D 1atg 145 :N T0547 385 :LESILTL 1atg 147 :VGQAHSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=98888 # 1kmvA.383.90 read from T0547.t06.many.frag # found chain 1kmvA in training set Warning: unaligning (T0547)H384 (1kmvA)S92 because Y (epsilon') conformation "forbidden" or filtered. T0547 383 :D 1kmvA 91 :R T0547 385 :LESILTL 1kmvA 93 :LDDALKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=98890 # 1vk1A.383.179 read from T0547.t06.many.frag # found chain 1vk1A in training set T0547 383 :DHLESILTL 1vk1A 180 :GLKEDAKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98891 # 1lst.383.140 read from T0547.t06.many.frag # found chain 1lst in training set Warning: unaligning (T0547)H384 (1lst)N142 because Y (epsilon') conformation "forbidden" or filtered. T0547 383 :D 1lst 141 :A T0547 385 :LESILTL 1lst 143 :QDLIYSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=98893 # 1iu8A.383.111 read from T0547.t06.many.frag # found chain 1iu8A in training set T0547 383 :DHLESILTL 1iu8A 112 :IPTREIVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98894 # 1t1uA.383.462 read from T0547.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)L391 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)V473 T0547 383 :DHLESILT 1t1uA 464 :SATPEALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=98895 # 1ev7A.383.175 read from T0547.t06.many.frag # found chain 1ev7A in template set T0547 383 :DHLESILTL 1ev7A 176 :HIPGDVRDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=98896 # 1zymA.383.229 read from T0547.t06.many.frag # found chain 1zymA in template set Warning: unaligning (T0547)D383 (1zymA)N230 because L (left) conformation "forbidden" or filtered. T0547 384 :HLESILTL 1zymA 231 :PTNEVIDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=98897 # 1g8mA.383.345 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)D383 (1g8mA)G346 because Y (epsilon') conformation "forbidden" or filtered. T0547 384 :HLESILTL 1g8mA 347 :YEEEALKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=98898 # 1s3rA.383.365 read from T0547.t06.many.frag # found chain 1s3rA in template set T0547 383 :DHLESILTL 1s3rA 363 :GNIDTLKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98899 # 1n3lA.383.235 read from T0547.t06.many.frag # found chain 1n3lA in training set T0547 383 :DHLESILTL 1n3lA 236 :DRKEDVKKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98900 # 1twuA.383.19 read from T0547.t06.many.frag # found chain 1twuA in template set T0547 383 :DHLESILTL 1twuA 20 :GQLDEIIRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=98901 # 1tr9A.383.254 read from T0547.t06.many.frag # found chain 1tr9A in training set T0547 383 :DHLESILTL 1tr9A 254 :GPVERSHQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98902 # 1nnfA.383.172 read from T0547.t06.many.frag # found chain 1nnfA in training set T0547 383 :DHLESILTL 1nnfA 173 :AKNSVALQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98903 # 1to6A.383.260 read from T0547.t06.many.frag # found chain 1to6A in template set T0547 383 :DHLESILTL 1to6A 261 :SGIDTCLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98904 # 1lb3A.383.89 read from T0547.t06.many.frag # found chain 1lb3A in training set Warning: unaligning (T0547)D383 (1lb3A)G94 because S (epsilon) conformation "forbidden" or filtered. T0547 384 :HLESILTL 1lb3A 95 :KTQEAMEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=98905 # 1rv9A.383.173 read from T0547.t06.many.frag # found chain 1rv9A in training set T0547 383 :DHLESILTL 1rv9A 174 :EVGQDVFDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98906 # 1a4iA.383.125 read from T0547.t06.many.frag # found chain 1a4iA in training set T0547 383 :DHLESILTL 1a4iA 126 :GLTSINAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=98907 # 1qmeA.383.652 read from T0547.t06.many.frag # found chain 1qmeA in template set Warning: unaligning (T0547)D383 (1qmeA)G701 because T (delta_L) conformation "forbidden" or filtered. T0547 384 :HLESILTL 1qmeA 702 :WTKETAET Number of specific fragments extracted= 1 number of extra gaps= 1 total=98908 # 1f74A.383.187 read from T0547.t06.many.frag # found chain 1f74A in training set T0547 383 :DHLESILTL 1f74A 188 :GFDEMMLPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98909 # 1gtkA.383.149 read from T0547.t06.many.frag # found chain 1gtkA in training set T0547 383 :DHLESILTL 1gtkA 150 :GNVGTRLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98910 # 1h5uA.383.711 read from T0547.t06.many.frag # found chain 1h5uA in template set T0547 383 :DHLESILTL 1h5uA 712 :GMRVEDVDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=98911 # 1tl9A.383.182 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 383 :DHLESILTL 1tl9A 208 :GCTSEAFED Number of specific fragments extracted= 1 number of extra gaps= 0 total=98912 # 1xubA.383.147 read from T0547.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0547)D383 (1xubA)G128 because L (left) conformation "forbidden" or filtered. T0547 384 :HLESILTL 1xubA 129 :RDAELLKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=98913 1twfJ expands to /projects/compbio/data/pdb/1twf.pdb.gz 1twfJ:# 1twfJ.383.15 read from T0547.t06.many.frag # adding 1twfJ to template set # found chain 1twfJ in template set Warning: unaligning (T0547)H384 (1twfJ)K17 because G (3-10) conformation "forbidden" or filtered. T0547 383 :D 1twfJ 16 :D T0547 385 :LESILTL 1twfJ 18 :WESYLNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=98915 # 1o20A.383.333 read from T0547.t06.many.frag # found chain 1o20A in template set Warning: unaligning (T0547)H384 (1o20A)N323 because Y (epsilon') conformation "forbidden" or filtered. T0547 383 :D 1o20A 322 :K T0547 385 :LESILTL 1o20A 324 :VDEAIEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=98917 # 1ooyA.383.340 read from T0547.t06.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)D383 (1ooyA)F341 because Y (epsilon') conformation "forbidden" or filtered. T0547 384 :HLESILTL 1ooyA 342 :SSDESFAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=98918 # 1knwA.384.339 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E386 (1knwA)C342 because N (gamma') conformation "forbidden" or filtered. T0547 384 :HL 1knwA 340 :PL T0547 387 :SILTLF 1knwA 343 :ESGDVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=98920 # 7odcA.384.357 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E386 (7odcA)C360 because N (gamma') conformation "forbidden" or filtered. T0547 384 :HL 7odcA 358 :PT T0547 387 :SILTLF 7odcA 361 :DGLDRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=98922 # 1xhnA.384.72 read from T0547.t06.many.frag # found chain 1xhnA in template set T0547 384 :HLESILTLF 1xhnA 73 :PLQLSVSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98923 # 1atg.384.144 read from T0547.t06.many.frag # found chain 1atg in training set Warning: unaligning (T0547)H384 (1atg)S146 because Y (epsilon') conformation "forbidden" or filtered. T0547 385 :LESILTLF 1atg 147 :VGQAHSQT Number of specific fragments extracted= 1 number of extra gaps= 1 total=98924 # 1ev7A.384.176 read from T0547.t06.many.frag # found chain 1ev7A in template set T0547 384 :HLESILTLF 1ev7A 177 :IPGDVRDQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=98925 # 1lst.384.141 read from T0547.t06.many.frag # found chain 1lst in training set Warning: unaligning (T0547)H384 (1lst)N142 because Y (epsilon') conformation "forbidden" or filtered. T0547 385 :LESILTLF 1lst 143 :QDLIYSDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=98926 # 1iu8A.384.112 read from T0547.t06.many.frag # found chain 1iu8A in training set T0547 384 :HLESILTLF 1iu8A 113 :PTREIVEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=98927 # 1zymA.384.230 read from T0547.t06.many.frag # found chain 1zymA in template set T0547 384 :HLESILTLF 1zymA 231 :PTNEVIDKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=98928 # 1t1uA.384.463 read from T0547.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)L391 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)V473 Warning: unaligning (T0547)F392 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)V473 T0547 384 :HLESILT 1t1uA 465 :ATPEALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=98929 # 1vk1A.384.180 read from T0547.t06.many.frag # found chain 1vk1A in training set T0547 384 :HLESILTLF 1vk1A 181 :LKEDAKADM Number of specific fragments extracted= 1 number of extra gaps= 0 total=98930 # 1rv9A.384.174 read from T0547.t06.many.frag # found chain 1rv9A in training set T0547 384 :HLESILTLF 1rv9A 175 :VGQDVFDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=98931 # 1n3lA.384.236 read from T0547.t06.many.frag # found chain 1n3lA in training set T0547 384 :HLESILTLF 1n3lA 237 :RKEDVKKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98932 # 1kmvA.384.91 read from T0547.t06.many.frag # found chain 1kmvA in training set Warning: unaligning (T0547)H384 (1kmvA)S92 because Y (epsilon') conformation "forbidden" or filtered. T0547 385 :LESILTLF 1kmvA 93 :LDDALKLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=98933 # 1nnfA.384.173 read from T0547.t06.many.frag # found chain 1nnfA in training set T0547 384 :HLESILTLF 1nnfA 174 :KNSVALQAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=98934 # 1s3rA.384.366 read from T0547.t06.many.frag # found chain 1s3rA in template set T0547 384 :HLESILTLF 1s3rA 364 :NIDTLKDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=98935 # 1gtkA.384.150 read from T0547.t06.many.frag # found chain 1gtkA in training set T0547 384 :HLESILTLF 1gtkA 151 :NVGTRLSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98936 # 1e0tA.384.378 read from T0547.t06.many.frag # found chain 1e0tA in template set T0547 384 :HLESILTLF 1e0tA 379 :QGGKSARAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=98937 # 1g8mA.384.346 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 384 :HLESILTLF 1g8mA 347 :YEEEALKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98938 # 1ooyA.384.341 read from T0547.t06.many.frag # found chain 1ooyA in training set T0547 384 :HLESILTLF 1ooyA 342 :SSDESFAMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=98939 # 1tl9A.384.183 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 384 :HLESILTLF 1tl9A 209 :CTSEAFEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=98940 # 1h5uA.384.712 read from T0547.t06.many.frag # found chain 1h5uA in template set T0547 384 :HLESILTLF 1h5uA 713 :MRVEDVDRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98941 # 1kqpA.384.225 read from T0547.t06.many.frag # found chain 1kqpA in training set T0547 384 :HLESILTLF 1kqpA 226 :ISYDEIDDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=98942 # 1o20A.384.334 read from T0547.t06.many.frag # found chain 1o20A in template set Warning: unaligning (T0547)H384 (1o20A)N323 because Y (epsilon') conformation "forbidden" or filtered. T0547 385 :LESILTLF 1o20A 324 :VDEAIEHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=98943 # 1to6A.384.261 read from T0547.t06.many.frag # found chain 1to6A in template set T0547 384 :HLESILTLF 1to6A 262 :GIDTCLDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=98944 # 1a4iA.384.126 read from T0547.t06.many.frag # found chain 1a4iA in training set T0547 384 :HLESILTLF 1a4iA 127 :LTSINAGRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=98945 # 1twuA.384.20 read from T0547.t06.many.frag # found chain 1twuA in template set Warning: unaligning (T0547)H384 (1twuA)Q21 because D (zeta) conformation "forbidden" or filtered. T0547 385 :LESILTLF 1twuA 22 :LDEIIRFY Number of specific fragments extracted= 1 number of extra gaps= 1 total=98946 # 1xubA.384.148 read from T0547.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0547)H384 (1xubA)R129 because G (3-10) conformation "forbidden" or filtered. T0547 385 :LESILTLF 1xubA 130 :DAELLKAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=98947 # 1kuuA.384.161 read from T0547.t06.many.frag # found chain 1kuuA in template set T0547 384 :HLESILTLF 1kuuA 162 :SPEEAAEFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=98948 # 1jx6A.384.267 read from T0547.t06.many.frag # found chain 1jx6A in training set Warning: unaligning (T0547)H384 (1jx6A)G291 because L (left) conformation "forbidden" or filtered. T0547 385 :LESILTLF 1jx6A 292 :GSAELDAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=98949 # 1pb7A.384.204 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 384 :HLESILTLF 1pb7A 205 :SAAEAIQAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=98950 # 1atg.385.145 read from T0547.t06.many.frag # found chain 1atg in training set T0547 385 :LESILTLFD 1atg 147 :VGQAHSQTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98951 # 1knwA.385.340 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 385 :LESILTLFD 1knwA 341 :LCESGDVFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=98952 # 1ev7A.385.177 read from T0547.t06.many.frag # found chain 1ev7A in template set T0547 385 :LESILTLFD 1ev7A 178 :PGDVRDQIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=98953 # 1xhnA.385.73 read from T0547.t06.many.frag # found chain 1xhnA in template set T0547 385 :LESILTLFD 1xhnA 74 :LQLSVSNLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=98954 # 1lst.385.142 read from T0547.t06.many.frag # found chain 1lst in training set T0547 385 :LESILTLFD 1lst 143 :QDLIYSDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=98955 # 7odcA.385.358 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D393 (7odcA)V367 because E (beta_S) conformation "forbidden" or filtered. T0547 385 :LESILTLF 7odcA 359 :TCDGLDRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=98956 # 1t1uA.385.464 read from T0547.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)L391 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)V473 Warning: unaligning (T0547)F392 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)V473 Warning: unaligning (T0547)D393 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q474 T0547 385 :LESILT 1t1uA 466 :TPEALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=98957 # 1qwgA.385.185 read from T0547.t06.many.frag # found chain 1qwgA in training set T0547 385 :LESILTLFD 1qwgA 186 :KENELDVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98958 # 1zymA.385.231 read from T0547.t06.many.frag # found chain 1zymA in template set T0547 385 :LESILTLFD 1zymA 232 :TNEVIDKMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=98959 # 1rv9A.385.175 read from T0547.t06.many.frag # found chain 1rv9A in training set T0547 385 :LESILTLFD 1rv9A 176 :GQDVFDAFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=98960 # 1ooyA.385.342 read from T0547.t06.many.frag # found chain 1ooyA in training set T0547 385 :LESILTLFD 1ooyA 343 :SDESFAMIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=98961 # 1gtkA.385.151 read from T0547.t06.many.frag # found chain 1gtkA in training set T0547 385 :LESILTLFD 1gtkA 152 :VGTRLSKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98962 # 1iu8A.385.113 read from T0547.t06.many.frag # found chain 1iu8A in training set T0547 385 :LESILTLFD 1iu8A 114 :TREIVEEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98963 # 1vk1A.385.181 read from T0547.t06.many.frag # found chain 1vk1A in training set T0547 385 :LESILTLFD 1vk1A 182 :KEDAKADME Number of specific fragments extracted= 1 number of extra gaps= 0 total=98964 # 1n3lA.385.237 read from T0547.t06.many.frag # found chain 1n3lA in training set T0547 385 :LESILTLFD 1n3lA 238 :KEDVKKKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98965 # 2akaB.385.207 read from T0547.t06.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)S387 (2akaB)D215 because Y (epsilon') conformation "forbidden" or filtered. T0547 385 :LE 2akaB 213 :GT T0547 388 :ILTLFD 2akaB 216 :ARDVLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=98967 # 1to6A.385.262 read from T0547.t06.many.frag # found chain 1to6A in template set T0547 385 :LESILTLFD 1to6A 263 :IDTCLDLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=98968 # 1s3rA.385.367 read from T0547.t06.many.frag # found chain 1s3rA in template set T0547 385 :LESILTLFD 1s3rA 365 :IDTLKDLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=98969 # 1vyrA.385.304 read from T0547.t06.many.frag # found chain 1vyrA in training set T0547 385 :LESILTLFD 1vyrA 305 :AEKAEDLIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=98970 # 2ab5A.385.140 read from T0547.t06.many.frag # found chain 2ab5A in template set T0547 385 :LESILTLFD 2ab5A 389 :FNTTEDILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=98971 # 1tl9A.385.184 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 385 :LESILTLFD 1tl9A 210 :TSEAFEDFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=98972 # 1o20A.385.335 read from T0547.t06.many.frag # found chain 1o20A in template set T0547 385 :LESILTLFD 1o20A 324 :VDEAIEHIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98973 # 1yovA.385.242 read from T0547.t06.many.frag # found chain 1yovA in template set T0547 385 :LESILTLFD 1yovA 240 :KEDFRDLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=98974 # 1kmvA.385.92 read from T0547.t06.many.frag # found chain 1kmvA in training set T0547 385 :LESILTLFD 1kmvA 93 :LDDALKLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98975 # 1tv9A.385.315 read from T0547.t06.many.frag # found chain 1tv9A in template set Warning: unaligning (T0547)F392 (1tv9A)I323 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D393 (1tv9A)Q324 because L (left) conformation "forbidden" or filtered. T0547 385 :LESILTL 1tv9A 316 :EKDIFDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=98976 # 1oohA.385.25 read from T0547.t06.many.frag # found chain 1oohA in training set T0547 385 :LESILTLFD 1oohA 24 :KTEDLDRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=98977 # 1a4iA.385.127 read from T0547.t06.many.frag # found chain 1a4iA in training set T0547 385 :LESILTLFD 1a4iA 128 :TSINAGRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98978 # 1twuA.385.21 read from T0547.t06.many.frag # found chain 1twuA in template set T0547 385 :LESILTLFD 1twuA 22 :LDEIIRFYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98979 # 1jx6A.385.268 read from T0547.t06.many.frag # found chain 1jx6A in training set T0547 385 :LESILTLFD 1jx6A 292 :GSAELDAIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=98980 # 1h5uA.385.713 read from T0547.t06.many.frag # found chain 1h5uA in template set T0547 385 :LESILTLFD 1h5uA 714 :RVEDVDRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98981 # 1atg.386.146 read from T0547.t06.many.frag # found chain 1atg in training set T0547 386 :ESILTLFDL 1atg 148 :GQAHSQTAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=98982 # 1ev7A.386.178 read from T0547.t06.many.frag # found chain 1ev7A in template set T0547 386 :ESILTLFDL 1ev7A 179 :GDVRDQIFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=98983 # 1vyrA.386.305 read from T0547.t06.many.frag # found chain 1vyrA in training set T0547 386 :ESILTLFDL 1vyrA 306 :EKAEDLIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98984 # 1lst.386.143 read from T0547.t06.many.frag # found chain 1lst in training set T0547 386 :ESILTLFDL 1lst 144 :DLIYSDLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=98985 # 1qwgA.386.186 read from T0547.t06.many.frag # found chain 1qwgA in training set T0547 386 :ESILTLFDL 1qwgA 187 :ENELDVLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98986 # 1ooyA.386.343 read from T0547.t06.many.frag # found chain 1ooyA in training set T0547 386 :ESILTLFDL 1ooyA 344 :DESFAMIRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=98987 # 1xhnA.386.74 read from T0547.t06.many.frag # found chain 1xhnA in template set T0547 386 :ESILTLFDL 1xhnA 75 :QLSVSNLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98988 # 1gtkA.386.152 read from T0547.t06.many.frag # found chain 1gtkA in training set T0547 386 :ESILTLFDL 1gtkA 153 :GTRLSKLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=98989 # 1pa7A.386.44 read from T0547.t06.many.frag # found chain 1pa7A in training set T0547 386 :ESILTLFDL 1pa7A 45 :CQFMDMLFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=98990 # 2ab5A.386.141 read from T0547.t06.many.frag # found chain 2ab5A in template set T0547 386 :ESILTLFDL 2ab5A 390 :NTTEDILNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98991 # 1e0tA.386.380 read from T0547.t06.many.frag # found chain 1e0tA in template set T0547 386 :ESILTLFDL 1e0tA 381 :GKSARAVRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=98992 # 1epuA.386.484 read from T0547.t06.many.frag # found chain 1epuA in template set T0547 386 :ESILTLFDL 1epuA 485 :KDIMEAAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98993 # 1h6fA.386.92 read from T0547.t06.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)E386 (1h6fA)P191 because C (cis) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1h6fA 192 :ATGEQWMS Number of specific fragments extracted= 1 number of extra gaps= 1 total=98994 # 1t1uA.386.465 read from T0547.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)L391 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)V473 Warning: unaligning (T0547)F392 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)V473 Warning: unaligning (T0547)D393 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q474 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE in next template residue (1t1uA)M476 T0547 386 :ESILT 1t1uA 467 :PEALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=98995 # 1rv9A.386.176 read from T0547.t06.many.frag # found chain 1rv9A in training set T0547 386 :ESILTLFDL 1rv9A 177 :QDVFDAFCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=98996 # 1r26A.386.27 read from T0547.t06.many.frag # found chain 1r26A in training set T0547 386 :ESILTLFDL 1r26A 9 :EQFRNIMSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98997 # 1tl9A.386.185 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)L394 (1tl9A)G219 because T (delta_L) conformation "forbidden" or filtered. T0547 386 :ESILTLFD 1tl9A 211 :SEAFEDFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=98998 # 1pb7A.386.206 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 386 :ESILTLFDL 1pb7A 207 :AEAIQAVRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=98999 # 2akaB.386.208 read from T0547.t06.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)S387 (2akaB)D215 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I388 (2akaB)A216 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L394 (2akaB)N222 because L (left) conformation "forbidden" or filtered. T0547 386 :E 2akaB 214 :T T0547 389 :LTLFD 2akaB 217 :RDVLE Number of specific fragments extracted= 2 number of extra gaps= 2 total=99001 # 1knwA.386.341 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 386 :ESILTLFDL 1knwA 342 :CESGDVFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=99002 # 1h5uA.386.714 read from T0547.t06.many.frag # found chain 1h5uA in template set T0547 386 :ESILTLFDL 1h5uA 715 :VEDVDRLDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=99003 # 1zymA.386.232 read from T0547.t06.many.frag # found chain 1zymA in template set T0547 386 :ESILTLFDL 1zymA 233 :NEVIDKMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99004 # 1a4iA.386.128 read from T0547.t06.many.frag # found chain 1a4iA in training set T0547 386 :ESILTLFDL 1a4iA 129 :SINAGRLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=99005 # 1yovA.386.243 read from T0547.t06.many.frag # found chain 1yovA in template set T0547 386 :ESILTLFDL 1yovA 241 :EDFRDLIRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=99006 # 1n3lA.386.238 read from T0547.t06.many.frag # found chain 1n3lA in training set T0547 386 :ESILTLFDL 1n3lA 239 :EDVKKKLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99007 # 1kuuA.386.163 read from T0547.t06.many.frag # found chain 1kuuA in template set T0547 386 :ESILTLFDL 1kuuA 164 :EEAAEFILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99008 # 1tv9A.386.316 read from T0547.t06.many.frag # found chain 1tv9A in template set Warning: unaligning (T0547)D393 (1tv9A)Q324 because L (left) conformation "forbidden" or filtered. T0547 386 :ESILTLF 1tv9A 317 :KDIFDYI T0547 394 :L 1tv9A 325 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=99010 # 1iu8A.386.114 read from T0547.t06.many.frag # found chain 1iu8A in training set T0547 386 :ESILTLFDL 1iu8A 115 :REIVEEMKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99011 # 1no7A.386.440 read from T0547.t06.many.frag # found chain 1no7A in template set T0547 386 :ESILTLFDL 1no7A 891 :MLTLQVLAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=99012 # 1mswD.386.614 read from T0547.t06.many.frag # found chain 1mswD in template set T0547 386 :ESILTLFDL 1mswD 615 :ALAGQWLAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99013 # 1atg.387.147 read from T0547.t06.many.frag # found chain 1atg in training set T0547 387 :SILTLFDLG 1atg 149 :QAHSQTASG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99014 # 1vyrA.387.306 read from T0547.t06.many.frag # found chain 1vyrA in training set T0547 387 :SILTLFDLG 1vyrA 307 :KAEDLIGKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99015 # 1lst.387.144 read from T0547.t06.many.frag # found chain 1lst in training set T0547 387 :SILTLFDLG 1lst 145 :LIYSDLTAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99016 # 1qwgA.387.187 read from T0547.t06.many.frag # found chain 1qwgA in training set T0547 387 :SILTLFDLG 1qwgA 188 :NELDVLAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=99017 # 1pa7A.387.45 read from T0547.t06.many.frag # found chain 1pa7A in training set T0547 387 :SILTLFDLG 1pa7A 46 :QFMDMLFPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99018 # 1ooyA.387.344 read from T0547.t06.many.frag # found chain 1ooyA in training set T0547 387 :SILTLFDLG 1ooyA 345 :ESFAMIRGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99019 # 1r26A.387.28 read from T0547.t06.many.frag # found chain 1r26A in training set Warning: unaligning (T0547)G395 (1r26A)D18 because N (gamma') conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1r26A 10 :QFRNIMSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=99020 # 1gtkA.387.153 read from T0547.t06.many.frag # found chain 1gtkA in training set T0547 387 :SILTLFDLG 1gtkA 154 :TRLSKLDNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99021 # 1ev7A.387.179 read from T0547.t06.many.frag # found chain 1ev7A in template set Warning: unaligning (T0547)G395 (1ev7A)A188 because Y (epsilon') conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1ev7A 180 :DVRDQIFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=99022 # 1h6fA.387.93 read from T0547.t06.many.frag # found chain 1h6fA in training set T0547 387 :SILTLFDLG 1h6fA 192 :ATGEQWMSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99023 # 1e0tA.387.381 read from T0547.t06.many.frag # found chain 1e0tA in template set T0547 387 :SILTLFDLG 1e0tA 382 :KSARAVRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99024 # 2akaB.387.209 read from T0547.t06.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)S387 (2akaB)D215 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L394 (2akaB)N222 because L (left) conformation "forbidden" or filtered. T0547 388 :ILTLFD 2akaB 216 :ARDVLE T0547 395 :G 2akaB 223 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=99026 # 1xhnA.387.75 read from T0547.t06.many.frag # found chain 1xhnA in template set T0547 387 :SILTLFDLG 1xhnA 76 :LSVSNLQEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=99027 # 1epuA.387.485 read from T0547.t06.many.frag # found chain 1epuA in template set T0547 387 :SILTLFDLG 1epuA 486 :DIMEAAVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=99028 # 1zcjA.387.369 read from T0547.t06.many.frag # found chain 1zcjA in template set T0547 387 :SILTLFDLG 1zcjA 629 :EAFRILEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99029 # 1pb7A.387.207 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 387 :SILTLFDLG 1pb7A 208 :EAIQAVRDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=99030 # 2bo4A.387.298 read from T0547.t06.many.frag # found chain 2bo4A in template set Warning: unaligning (T0547)G395 (2bo4A)R307 because Y (epsilon') conformation "forbidden" or filtered. T0547 387 :SILTLFDL 2bo4A 299 :EGLRTCQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=99031 # 2ab5A.387.142 read from T0547.t06.many.frag # found chain 2ab5A in template set Warning: unaligning (T0547)G395 (2ab5A)N399 because G (3-10) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 2ab5A 391 :TTEDILNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=99032 # 1yovA.387.244 read from T0547.t06.many.frag # found chain 1yovA in template set T0547 387 :SILTLFDLG 1yovA 242 :DFRDLIRQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99033 # 1tv9A.387.317 read from T0547.t06.many.frag # found chain 1tv9A in template set Warning: unaligning (T0547)D393 (1tv9A)Q324 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G395 (1tv9A)K326 because P (beta_P) conformation "forbidden" or filtered. T0547 387 :SILTLF 1tv9A 318 :DIFDYI T0547 394 :L 1tv9A 325 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=99035 # 1no7A.387.441 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)G395 (1no7A)N900 because D (zeta) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1no7A 892 :LTLQVLAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=99036 # 1mswD.387.615 read from T0547.t06.many.frag # found chain 1mswD in template set T0547 387 :SILTLFDLG 1mswD 616 :LAGQWLAYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99037 # 1d0qA.387.17 read from T0547.t06.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)G395 (1d0qA)Y26 because G (3-10) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1d0qA 18 :DIVDVIGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=99038 # 1a4iA.387.129 read from T0547.t06.many.frag # found chain 1a4iA in training set T0547 387 :SILTLFDLG 1a4iA 130 :INAGRLARG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99039 # 1n3lA.387.239 read from T0547.t06.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)G395 (1n3lA)A248 because P (beta_P) conformation "forbidden" or filtered. T0547 387 :SILTLFDL 1n3lA 240 :DVKKKLKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=99040 # 1tl9A.387.186 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 387 :SILTLFDLG 1tl9A 212 :EAFEDFTGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99041 # 1t4fM.387.65 read from T0547.t06.many.frag # found chain 1t4fM in template set Warning: unaligning (T0547)D393 (1t4fM)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 387 :SILTLF 1t4fM 81 :LLGDLF T0547 394 :LG 1t4fM 88 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=99043 1r71A expands to /projects/compbio/data/pdb/1r71.pdb.gz 1r71A:# 1r71A.387.80 read from T0547.t06.many.frag # adding 1r71A to template set # found chain 1r71A in template set T0547 387 :SILTLFDLG 1r71A 197 :KIADAFNTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99044 # 1rv9A.387.177 read from T0547.t06.many.frag # found chain 1rv9A in training set T0547 387 :SILTLFDLG 1rv9A 178 :DVFDAFCTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99045 # 1t1uA.387.466 read from T0547.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0547)L391 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)V473 Warning: unaligning (T0547)F392 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)V473 Warning: unaligning (T0547)D393 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q474 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE in next template residue (1t1uA)M476 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)M476 T0547 387 :SILT 1t1uA 468 :EALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=99046 # 1vyrA.388.307 read from T0547.t06.many.frag # found chain 1vyrA in training set T0547 388 :ILTLFDLGY 1vyrA 308 :AEDLIGKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99047 # 1atg.388.148 read from T0547.t06.many.frag # found chain 1atg in training set T0547 388 :ILTLFDLGY 1atg 150 :AHSQTASGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99048 # 1pa7A.388.46 read from T0547.t06.many.frag # found chain 1pa7A in training set T0547 388 :ILTLFDLGY 1pa7A 47 :FMDMLFPGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=99049 # 1lst.388.145 read from T0547.t06.many.frag # found chain 1lst in training set T0547 388 :ILTLFDLGY 1lst 146 :IYSDLTAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=99050 # 1r26A.388.29 read from T0547.t06.many.frag # found chain 1r26A in training set Warning: unaligning (T0547)G395 (1r26A)D18 because N (gamma') conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1r26A 11 :FRNIMSE T0547 396 :Y 1r26A 19 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=99052 # 1qwgA.388.188 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)G395 (1qwgA)N196 because G (3-10) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1qwgA 189 :ELDVLAK T0547 396 :Y 1qwgA 197 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=99054 # 1gtkA.388.154 read from T0547.t06.many.frag # found chain 1gtkA in training set T0547 388 :ILTLFDLGY 1gtkA 155 :RLSKLDNGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=99055 # 1h6fA.388.94 read from T0547.t06.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)G395 (1h6fA)K200 because E (beta_S) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1h6fA 193 :TGEQWMS T0547 396 :Y 1h6fA 201 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=99057 # 1ooyA.388.345 read from T0547.t06.many.frag # found chain 1ooyA in training set T0547 388 :ILTLFDLGY 1ooyA 346 :SFAMIRGGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=99058 # 1e0tA.388.382 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)G395 (1e0tA)Y390 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y396 (1e0tA)F391 because L (left) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1e0tA 383 :SARAVRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=99059 # 1zcjA.388.370 read from T0547.t06.many.frag # found chain 1zcjA in template set T0547 388 :ILTLFDLGY 1zcjA 630 :AFRILEEGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=99060 # 1d0qA.388.18 read from T0547.t06.many.frag # found chain 1d0qA in training set T0547 388 :ILTLFDLGY 1d0qA 19 :IVDVIGEYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99061 # 1epuA.388.486 read from T0547.t06.many.frag # found chain 1epuA in template set T0547 388 :ILTLFDLGY 1epuA 487 :IMEAAVEDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99062 # 2akaB.388.210 read from T0547.t06.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)L394 (2akaB)N222 because L (left) conformation "forbidden" or filtered. T0547 388 :ILTLFD 2akaB 216 :ARDVLE T0547 395 :GY 2akaB 223 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99064 # 1wpuA.388.80 read from T0547.t06.many.frag # found chain 1wpuA in training set Warning: unaligning (T0547)L394 (1wpuA)R88 because L (left) conformation "forbidden" or filtered. T0547 388 :ILTLFD 1wpuA 82 :ALHGVT T0547 395 :GY 1wpuA 89 :GE Number of specific fragments extracted= 2 number of extra gaps= 1 total=99066 # 1tv9A.388.318 read from T0547.t06.many.frag # found chain 1tv9A in template set Warning: unaligning (T0547)D393 (1tv9A)Q324 because L (left) conformation "forbidden" or filtered. T0547 388 :ILTLF 1tv9A 319 :IFDYI T0547 394 :LGY 1tv9A 325 :WKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=99068 # 1r0vA.388.185 read from T0547.t06.many.frag # found chain 1r0vA in template set T0547 388 :ILTLFDLGY 1r0vA 186 :SLYLLDLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99069 # 1jc9A.388.48 read from T0547.t06.many.frag # found chain 1jc9A in template set T0547 388 :ILTLFDLGY 1jc9A 49 :CADILLNGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99070 # 2bo4A.388.299 read from T0547.t06.many.frag # found chain 2bo4A in template set T0547 388 :ILTLFDLGY 2bo4A 300 :GLRTCQRRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99071 # 1pb7A.388.208 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 388 :ILTLFDLGY 1pb7A 209 :AIQAVRDNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99072 # 1r71A.388.81 read from T0547.t06.many.frag # found chain 1r71A in template set T0547 388 :ILTLFDLGY 1r71A 198 :IADAFNTGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=99073 # 1a4iA.388.130 read from T0547.t06.many.frag # found chain 1a4iA in training set T0547 388 :ILTLFDLGY 1a4iA 131 :NAGRLARGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99074 # 1xhnA.388.76 read from T0547.t06.many.frag # found chain 1xhnA in template set T0547 388 :ILTLFDLGY 1xhnA 77 :SVSNLQENP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99075 # 1t4fM.388.66 read from T0547.t06.many.frag # found chain 1t4fM in template set Warning: unaligning (T0547)D393 (1t4fM)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 388 :ILTLF 1t4fM 82 :LGDLF T0547 394 :LGY 1t4fM 88 :VPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=99077 # 1mswD.388.616 read from T0547.t06.many.frag # found chain 1mswD in template set T0547 388 :ILTLFDLGY 1mswD 617 :AGQWLAYGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99078 # 1f74A.388.192 read from T0547.t06.many.frag # found chain 1f74A in training set T0547 388 :ILTLFDLGY 1f74A 193 :MLPAASLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99079 # 2ab5A.388.116 read from T0547.t06.many.frag # found chain 2ab5A in template set T0547 388 :ILTLFDLGY 2ab5A 365 :FKDNLLKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=99080 # 2ab5A.388.143 read from T0547.t06.many.frag # found chain 2ab5A in template set Warning: unaligning (T0547)G395 (2ab5A)N399 because G (3-10) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 2ab5A 392 :TEDILNK T0547 396 :Y 2ab5A 400 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=99082 # 1yovA.388.245 read from T0547.t06.many.frag # found chain 1yovA in template set Warning: unaligning (T0547)G395 (1yovA)G250 because G (3-10) conformation "forbidden" or filtered. T0547 388 :ILTLFDL 1yovA 243 :FRDLIRQ T0547 396 :Y 1yovA 251 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=99084 # 1rv9A.388.178 read from T0547.t06.many.frag # found chain 1rv9A in training set T0547 388 :ILTLFDLGY 1rv9A 179 :VFDAFCTPM Number of specific fragments extracted= 1 number of extra gaps= 0 total=99085 # 1vyrA.389.308 read from T0547.t06.many.frag # found chain 1vyrA in training set T0547 389 :LTLFDLGYV 1vyrA 309 :EDLIGKGLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=99086 # 1pa7A.389.47 read from T0547.t06.many.frag # found chain 1pa7A in training set T0547 389 :LTLFDLGYV 1pa7A 48 :MDMLFPGSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=99087 # 1r26A.389.30 read from T0547.t06.many.frag # found chain 1r26A in training set T0547 389 :LTLFDLGYV 1r26A 12 :RNIMSEDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99088 # 1atg.389.149 read from T0547.t06.many.frag # found chain 1atg in training set T0547 389 :LTLFDLGYV 1atg 151 :HSQTASGAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99089 # 1lst.389.146 read from T0547.t06.many.frag # found chain 1lst in training set T0547 389 :LTLFDLGYV 1lst 147 :YSDLTAGRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99090 # 1h6fA.389.95 read from T0547.t06.many.frag # found chain 1h6fA in training set T0547 389 :LTLFDLGYV 1h6fA 194 :GEQWMSKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99091 # 1qwgA.389.189 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)G395 (1qwgA)N196 because G (3-10) conformation "forbidden" or filtered. T0547 389 :LTLFDL 1qwgA 190 :LDVLAK T0547 396 :YV 1qwgA 197 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=99093 # 1d0qA.389.19 read from T0547.t06.many.frag # found chain 1d0qA in training set Warning: unaligning (T0547)G395 (1d0qA)Y26 because G (3-10) conformation "forbidden" or filtered. T0547 389 :LTLFDL 1d0qA 20 :VDVIGE T0547 396 :YV 1d0qA 27 :VQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=99095 # 1zcjA.389.371 read from T0547.t06.many.frag # found chain 1zcjA in template set T0547 389 :LTLFDLGYV 1zcjA 631 :FRILEEGMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99096 # 1gtkA.389.155 read from T0547.t06.many.frag # found chain 1gtkA in training set T0547 389 :LTLFDLGYV 1gtkA 156 :LSKLDNGEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99097 # 2ab5A.389.117 read from T0547.t06.many.frag # found chain 2ab5A in template set T0547 389 :LTLFDLGYV 2ab5A 366 :KDNLLKDIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99098 # 1e0tA.389.383 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)Y396 (1e0tA)F391 because L (left) conformation "forbidden" or filtered. T0547 389 :LTLFDLG 1e0tA 384 :ARAVRKY T0547 397 :V 1e0tA 392 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=99100 # 2akaB.389.211 read from T0547.t06.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)L394 (2akaB)N222 because L (left) conformation "forbidden" or filtered. T0547 389 :LTLFD 2akaB 217 :RDVLE T0547 395 :GYV 2akaB 223 :KLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99102 # 1wpuA.389.81 read from T0547.t06.many.frag # found chain 1wpuA in training set T0547 389 :LTLFDLGYV 1wpuA 83 :LHGVTRGEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=99103 # 1ooyA.389.346 read from T0547.t06.many.frag # found chain 1ooyA in training set T0547 389 :LTLFDLGYV 1ooyA 347 :FAMIRGGHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99104 # 1r71A.389.82 read from T0547.t06.many.frag # found chain 1r71A in template set T0547 389 :LTLFDLGYV 1r71A 199 :ADAFNTGRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99105 # 1epuA.389.487 read from T0547.t06.many.frag # found chain 1epuA in template set T0547 389 :LTLFDLGYV 1epuA 488 :MEAAVEDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99106 # 1jc9A.389.49 read from T0547.t06.many.frag # found chain 1jc9A in template set T0547 389 :LTLFDLGYV 1jc9A 50 :ADILLNGYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=99107 # 2cx6A.389.38 read from T0547.t06.many.frag # found chain 2cx6A in template set T0547 389 :LTLFDLGYV 2cx6A 39 :WDVLMNDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99108 # 1pb7A.389.209 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 389 :LTLFDLGYV 1pb7A 210 :IQAVRDNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99109 # 1r0vA.389.186 read from T0547.t06.many.frag # found chain 1r0vA in template set T0547 389 :LTLFDLGYV 1r0vA 187 :LYLLDLGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99110 # 1y60A.389.94 read from T0547.t06.many.frag # found chain 1y60A in template set T0547 389 :LTLFDLGYV 1y60A 96 :QDAVAEGII Number of specific fragments extracted= 1 number of extra gaps= 0 total=99111 # 1yovA.389.246 read from T0547.t06.many.frag # found chain 1yovA in template set T0547 389 :LTLFDLGYV 1yovA 244 :RDLIRQGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99112 # 1musA.389.404 read from T0547.t06.many.frag # found chain 1musA in template set T0547 389 :LTLFDLGYV 1musA 405 :LGYLDKGKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=99113 # 1rv9A.389.179 read from T0547.t06.many.frag # found chain 1rv9A in training set T0547 389 :LTLFDLGYV 1rv9A 180 :FDAFCTPMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99114 1ekrA expands to /projects/compbio/data/pdb/1ekr.pdb.gz 1ekrA:Skipped atom 405, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 407, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 409, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 411, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 413, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 540, because occupancy 0.300 <= existing 0.700 in 1ekrA Skipped atom 542, because occupancy 0.300 <= existing 0.700 in 1ekrA Skipped atom 544, because occupancy 0.300 <= existing 0.700 in 1ekrA Skipped atom 546, because occupancy 0.300 <= existing 0.700 in 1ekrA Skipped atom 913, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 915, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 917, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 919, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 1019, because occupancy 0.400 <= existing 0.600 in 1ekrA Skipped atom 1021, because occupancy 0.400 <= existing 0.600 in 1ekrA Skipped atom 1023, because occupancy 0.400 <= existing 0.600 in 1ekrA Skipped atom 1025, because occupancy 0.400 <= existing 0.600 in 1ekrA Skipped atom 1027, because occupancy 0.400 <= existing 0.600 in 1ekrA Skipped atom 1029, because occupancy 0.400 <= existing 0.600 in 1ekrA Skipped atom 1031, because occupancy 0.400 <= existing 0.600 in 1ekrA # 1ekrA.389.40 read from T0547.t06.many.frag # adding 1ekrA to template set # found chain 1ekrA in template set Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1ekrA)D46 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ekrA)D46 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ekrA)G47 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ekrA)R48 T0547 389 :LTLF 1ekrA 41 :LAMI T0547 397 :V 1ekrA 49 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=99116 # 1t4fM.389.67 read from T0547.t06.many.frag # found chain 1t4fM in template set Warning: unaligning (T0547)D393 (1t4fM)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 389 :LTLF 1t4fM 83 :GDLF T0547 394 :LGYV 1t4fM 88 :VPSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=99118 # 1lniA.389.18 read from T0547.t06.many.frag # found chain 1lniA in training set Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE in next template residue (1lniA)P27 Warning: unaligning (T0547)V397 because of BadResidue code BAD_PEPTIDE at template residue (1lniA)P27 T0547 389 :LTLFDLG 1lniA 19 :LNLIASD Number of specific fragments extracted= 1 number of extra gaps= 1 total=99119 # 2b0aA.389.136 read from T0547.t06.many.frag # found chain 2b0aA in training set T0547 389 :LTLFDLGYV 2b0aA 137 :KRLLSNNIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99120 # 1z90A.389.304 read from T0547.t06.many.frag # found chain 1z90A in template set T0547 389 :LTLFDLGYV 1z90A 305 :KKLVEADAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99121 # 1pa7A.390.48 read from T0547.t06.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)D393 (1pa7A)F52 because D (zeta) conformation "forbidden" or filtered. T0547 390 :TLF 1pa7A 49 :DML T0547 394 :LGYVD 1pa7A 53 :PGSIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=99123 # 1vyrA.390.309 read from T0547.t06.many.frag # found chain 1vyrA in training set T0547 390 :TLFDLGYVD 1vyrA 310 :DLIGKGLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=99124 # 1lst.390.147 read from T0547.t06.many.frag # found chain 1lst in training set T0547 390 :TLFDLGYVD 1lst 148 :SDLTAGRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99125 # 1wpuA.390.82 read from T0547.t06.many.frag # found chain 1wpuA in training set Warning: unaligning (T0547)L394 (1wpuA)R88 because L (left) conformation "forbidden" or filtered. T0547 390 :TLFD 1wpuA 84 :HGVT T0547 395 :GYVD 1wpuA 89 :GEML Number of specific fragments extracted= 2 number of extra gaps= 1 total=99127 # 1h6fA.390.96 read from T0547.t06.many.frag # found chain 1h6fA in training set Warning: unaligning (T0547)D398 (1h6fA)T203 because E (beta_S) conformation "forbidden" or filtered. T0547 390 :TLFDLGYV 1h6fA 195 :EQWMSKVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=99128 # 2cx6A.390.39 read from T0547.t06.many.frag # found chain 2cx6A in template set T0547 390 :TLFDLGYVD 2cx6A 40 :DVLMNDVLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99129 # 2ab5A.390.118 read from T0547.t06.many.frag # found chain 2ab5A in template set T0547 390 :TLFDLGYVD 2ab5A 367 :DNLLKDIKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99130 # 1atg.390.150 read from T0547.t06.many.frag # found chain 1atg in training set T0547 390 :TLFDLGYVD 1atg 152 :SQTASGAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99131 # 1r26A.390.31 read from T0547.t06.many.frag # found chain 1r26A in training set Warning: unaligning (T0547)G395 (1r26A)D18 because N (gamma') conformation "forbidden" or filtered. T0547 390 :TLFDL 1r26A 13 :NIMSE T0547 396 :YVD 1r26A 19 :ILT Number of specific fragments extracted= 2 number of extra gaps= 1 total=99133 # 1r0vA.390.187 read from T0547.t06.many.frag # found chain 1r0vA in template set T0547 390 :TLFDLGYVD 1r0vA 188 :YLLDLGKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=99134 # 1epuA.390.488 read from T0547.t06.many.frag # found chain 1epuA in template set T0547 390 :TLFDLGYVD 1epuA 489 :EAAVEDKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99135 # 1e0tA.390.384 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)Y396 (1e0tA)F391 because L (left) conformation "forbidden" or filtered. T0547 390 :TLFDLG 1e0tA 385 :RAVRKY T0547 397 :VD 1e0tA 392 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=99137 # 1zcjA.390.372 read from T0547.t06.many.frag # found chain 1zcjA in template set T0547 390 :TLFDLGYVD 1zcjA 632 :RILEEGMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99138 # 1ekrA.390.41 read from T0547.t06.many.frag # found chain 1ekrA in template set Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1ekrA)D46 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ekrA)D46 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ekrA)G47 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ekrA)R48 T0547 390 :TLF 1ekrA 42 :AMI T0547 397 :VD 1ekrA 49 :HH Number of specific fragments extracted= 2 number of extra gaps= 1 total=99140 # 1pb7A.390.210 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 390 :TLFDLGYVD 1pb7A 211 :QAVRDNKLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=99141 # 1lrv.390.90 read from T0547.t06.many.frag # found chain 1lrv in template set T0547 390 :TLFDLGYVD 1lrv 91 :RRAVAYRLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99142 # 1zvdA.390.141 read from T0547.t06.many.frag # found chain 1zvdA in template set T0547 390 :TLFDLGYVD 1zvdA 510 :KQLLGKSIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=99143 # 1z90A.390.305 read from T0547.t06.many.frag # found chain 1z90A in template set T0547 390 :TLFDLGYVD 1z90A 306 :KLVEADALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99144 # 1j0dA.390.304 read from T0547.t06.many.frag # found chain 1j0dA in template set T0547 390 :TLFDLGYVD 1j0dA 305 :ALIKEDYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99145 # 1y60A.390.95 read from T0547.t06.many.frag # found chain 1y60A in template set Warning: unaligning (T0547)D398 (1y60A)P105 because P (beta_P) conformation "forbidden" or filtered. T0547 390 :TLFDLGYV 1y60A 97 :DAVAEGII Number of specific fragments extracted= 1 number of extra gaps= 1 total=99146 # 1ooyA.390.347 read from T0547.t06.many.frag # found chain 1ooyA in training set T0547 390 :TLFDLGYVD 1ooyA 348 :AMIRGGHVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=99147 # 1yovA.390.247 read from T0547.t06.many.frag # found chain 1yovA in template set T0547 390 :TLFDLGYVD 1yovA 245 :DLIRQGILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99148 # 1gtkA.390.156 read from T0547.t06.many.frag # found chain 1gtkA in training set T0547 390 :TLFDLGYVD 1gtkA 157 :SKLDNGEYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99149 # 1m6eX.390.264 read from T0547.t06.many.frag # found chain 1m6eX in template set Warning: unaligning (T0547)G395 (1m6eX)G270 because N (gamma') conformation "forbidden" or filtered. T0547 390 :TLFDL 1m6eX 265 :EILKE T0547 396 :YVD 1m6eX 271 :SFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99151 # 1iicA.390.194 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 390 :TLFDLGYVD 1iicA 228 :KLYEVDFTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99152 # 1qwgA.390.190 read from T0547.t06.many.frag # found chain 1qwgA in training set Warning: unaligning (T0547)G395 (1qwgA)N196 because G (3-10) conformation "forbidden" or filtered. T0547 390 :TLFDL 1qwgA 191 :DVLAK T0547 396 :YVD 1qwgA 197 :VDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=99154 # 1jc9A.390.50 read from T0547.t06.many.frag # found chain 1jc9A in template set T0547 390 :TLFDLGYVD 1jc9A 51 :DILLNGYRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=99155 # 1musA.390.405 read from T0547.t06.many.frag # found chain 1musA in template set T0547 390 :TLFDLGYVD 1musA 406 :GYLDKGKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99156 # 2akaB.390.212 read from T0547.t06.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)L394 (2akaB)N222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (2akaB)P226 because P (beta_P) conformation "forbidden" or filtered. T0547 390 :TLFD 2akaB 218 :DVLE T0547 395 :GYV 2akaB 223 :KLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=99158 # 1r71A.390.83 read from T0547.t06.many.frag # found chain 1r71A in template set T0547 390 :TLFDLGYVD 1r71A 200 :DAFNTGRVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=99159 # 1pa7A.391.49 read from T0547.t06.many.frag # found chain 1pa7A in training set T0547 391 :LFDLGYVDL 1pa7A 50 :MLFPGSIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99160 # 2cx6A.391.40 read from T0547.t06.many.frag # found chain 2cx6A in template set T0547 391 :LFDLGYVDL 2cx6A 41 :VLMNDVLPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99161 # 1wpuA.391.83 read from T0547.t06.many.frag # found chain 1wpuA in training set Warning: unaligning (T0547)L394 (1wpuA)R88 because L (left) conformation "forbidden" or filtered. T0547 391 :LFD 1wpuA 85 :GVT T0547 395 :GYVDL 1wpuA 89 :GEMLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99163 # 1h6fA.391.97 read from T0547.t06.many.frag # found chain 1h6fA in training set T0547 391 :LFDLGYVDL 1h6fA 196 :QWMSKVVTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=99164 # 2ab5A.391.119 read from T0547.t06.many.frag # found chain 2ab5A in template set T0547 391 :LFDLGYVDL 2ab5A 368 :NLLKDIKYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99165 # 1lst.391.148 read from T0547.t06.many.frag # found chain 1lst in training set Warning: unaligning (T0547)L399 (1lst)A157 because Y (epsilon') conformation "forbidden" or filtered. T0547 391 :LFDLGYVD 1lst 149 :DLTAGRLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=99166 # 1iicA.391.195 read from T0547.t06.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)D398 (1iicA)G236 because P (beta_P) conformation "forbidden" or filtered. T0547 391 :LFDLGYV 1iicA 229 :LYEVDFT T0547 399 :L 1iicA 237 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=99168 # 1vyrA.391.310 read from T0547.t06.many.frag # found chain 1vyrA in training set T0547 391 :LFDLGYVDL 1vyrA 311 :LIGKGLIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99169 # 1r0vA.391.188 read from T0547.t06.many.frag # found chain 1r0vA in template set T0547 391 :LFDLGYVDL 1r0vA 189 :LLDLGKLNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99170 # 1e0tA.391.385 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)Y396 (1e0tA)F391 because L (left) conformation "forbidden" or filtered. T0547 391 :LFDLG 1e0tA 386 :AVRKY T0547 397 :VDL 1e0tA 392 :PDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=99172 # 1lrv.391.91 read from T0547.t06.many.frag # found chain 1lrv in template set T0547 391 :LFDLGYVDL 1lrv 92 :RAVAYRLPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=99173 # 1y60A.391.96 read from T0547.t06.many.frag # found chain 1y60A in template set T0547 391 :LFDLGYVDL 1y60A 98 :AVAEGIIPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99174 # 1z90A.391.306 read from T0547.t06.many.frag # found chain 1z90A in template set T0547 391 :LFDLGYVDL 1z90A 307 :LVEADALKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=99175 # 1j0dA.391.305 read from T0547.t06.many.frag # found chain 1j0dA in template set T0547 391 :LFDLGYVDL 1j0dA 306 :LIKEDYFKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99176 # 1epuA.391.489 read from T0547.t06.many.frag # found chain 1epuA in template set T0547 391 :LFDLGYVDL 1epuA 490 :AAVEDKLDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=99177 # 2akaB.391.213 read from T0547.t06.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)L394 (2akaB)N222 because L (left) conformation "forbidden" or filtered. T0547 391 :LFD 2akaB 219 :VLE T0547 395 :GYVDL 2akaB 223 :KLLPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99179 # 1atg.391.151 read from T0547.t06.many.frag # found chain 1atg in training set T0547 391 :LFDLGYVDL 1atg 153 :QTASGAADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99180 # 1ekrA.391.42 read from T0547.t06.many.frag # found chain 1ekrA in template set Warning: unaligning (T0547)D393 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1ekrA)D46 Warning: unaligning (T0547)L394 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ekrA)D46 Warning: unaligning (T0547)G395 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ekrA)G47 Warning: unaligning (T0547)Y396 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1ekrA)R48 T0547 391 :LF 1ekrA 43 :MI T0547 397 :VDL 1ekrA 49 :HHK Number of specific fragments extracted= 2 number of extra gaps= 1 total=99182 # 1yw0A.391.152 read from T0547.t06.many.frag # found chain 1yw0A in template set Warning: unaligning (T0547)G395 (1yw0A)F179 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y396 (1yw0A)G180 because T (delta_L) conformation "forbidden" or filtered. T0547 391 :LFDL 1yw0A 175 :YLAR T0547 397 :VDL 1yw0A 181 :HAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=99184 # 1zvdA.391.142 read from T0547.t06.many.frag # found chain 1zvdA in template set Warning: unaligning (T0547)L394 (1zvdA)G514 because T (delta_L) conformation "forbidden" or filtered. T0547 391 :LFD 1zvdA 511 :QLL T0547 395 :GYVDL 1zvdA 515 :KSITL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99186 # 1zcjA.391.373 read from T0547.t06.many.frag # found chain 1zcjA in template set T0547 391 :LFDLGYVDL 1zcjA 633 :ILEEGMAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=99187 # 2f22A.391.53 read from T0547.t06.many.frag # found chain 2f22A in training set Warning: unaligning (T0547)D398 (2f22A)K60 because D (zeta) conformation "forbidden" or filtered. T0547 391 :LFDLGYV 2f22A 53 :GLKTGSI T0547 399 :L 2f22A 61 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=99189 # 1yovA.391.248 read from T0547.t06.many.frag # found chain 1yovA in template set Warning: unaligning (T0547)G395 (1yovA)G250 because G (3-10) conformation "forbidden" or filtered. T0547 391 :LFDL 1yovA 246 :LIRQ T0547 396 :YVDL 1yovA 251 :ILKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=99191 # 1pb7A.391.211 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 391 :LFDLGYVDL 1pb7A 212 :AVRDNKLHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99192 # 1ywmA.391.46 read from T0547.t06.many.frag # found chain 1ywmA in template set T0547 391 :LFDLGYVDL 1ywmA 85 :DVKLGKIDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99193 # 1qv9A.391.166 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 391 :LFDLGYVDL 1qv9A 167 :KAKEDEISE Number of specific fragments extracted= 1 number of extra gaps= 0 total=99194 # 1x75A.391.46 read from T0547.t06.many.frag # found chain 1x75A in template set Warning: unaligning (T0547)L399 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1x75A)N419 T0547 391 :LFDLGYVD 1x75A 409 :ALVANPWQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=99195 # 1r71A.391.84 read from T0547.t06.many.frag # found chain 1r71A in template set T0547 391 :LFDLGYVDL 1r71A 201 :AFNTGRVRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99196 # 1r26A.391.32 read from T0547.t06.many.frag # found chain 1r26A in training set Warning: unaligning (T0547)G395 (1r26A)D18 because N (gamma') conformation "forbidden" or filtered. T0547 391 :LFDL 1r26A 14 :IMSE T0547 396 :YVDL 1r26A 19 :ILTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99198 # 1m6eX.391.265 read from T0547.t06.many.frag # found chain 1m6eX in template set T0547 391 :LFDLGYVDL 1m6eX 266 :ILKEGSFLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=99199 # 1pa7A.392.50 read from T0547.t06.many.frag # found chain 1pa7A in training set T0547 392 :FDLGYVDLQ 1pa7A 51 :LFPGSIALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99200 # 1iicA.392.196 read from T0547.t06.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)Y396 (1iicA)F234 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1iicA)G236 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1iicA)P238 because P (beta_P) conformation "forbidden" or filtered. T0547 392 :FDLG 1iicA 230 :YEVD T0547 397 :V 1iicA 235 :T T0547 399 :L 1iicA 237 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=99203 # 2cx6A.392.41 read from T0547.t06.many.frag # found chain 2cx6A in template set Warning: unaligning (T0547)Q400 (2cx6A)P50 because C (cis) conformation "forbidden" or filtered. T0547 392 :FDLGYVDL 2cx6A 42 :LMNDVLPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=99204 # 1r0vA.392.189 read from T0547.t06.many.frag # found chain 1r0vA in template set T0547 392 :FDLGYVDLQ 1r0vA 190 :LDLGKLNLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99205 # 1wpuA.392.84 read from T0547.t06.many.frag # found chain 1wpuA in training set Warning: unaligning (T0547)D398 (1wpuA)L92 because E (beta_S) conformation "forbidden" or filtered. T0547 392 :FDLGYV 1wpuA 86 :VTRGEM T0547 399 :LQ 1wpuA 93 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=99207 # 1lrv.392.92 read from T0547.t06.many.frag # found chain 1lrv in template set T0547 392 :FDLGYVDLQ 1lrv 93 :AVAYRLPRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=99208 # 1h6fA.392.98 read from T0547.t06.many.frag # found chain 1h6fA in training set T0547 392 :FDLGYVDLQ 1h6fA 197 :WMSKVVTFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=99209 # 2ab5A.392.120 read from T0547.t06.many.frag # found chain 2ab5A in template set Warning: unaligning (T0547)V397 (2ab5A)K374 because G (3-10) conformation "forbidden" or filtered. T0547 392 :FDLGY 2ab5A 369 :LLKDI T0547 398 :DLQ 2ab5A 375 :YYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=99211 # 1tbfA.392.227 read from T0547.t06.many.frag # found chain 1tbfA in training set Warning: unaligning (T0547)D398 (1tbfA)N745 because D (zeta) conformation "forbidden" or filtered. T0547 392 :FDLGYV 1tbfA 739 :IRKNQF T0547 399 :LQ 1tbfA 746 :LE Number of specific fragments extracted= 2 number of extra gaps= 1 total=99213 # 1y60A.392.97 read from T0547.t06.many.frag # found chain 1y60A in template set T0547 392 :FDLGYVDLQ 1y60A 99 :VAEGIIPAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99214 # 1lst.392.149 read from T0547.t06.many.frag # found chain 1lst in training set Warning: unaligning (T0547)L399 (1lst)A157 because Y (epsilon') conformation "forbidden" or filtered. T0547 392 :FDLGYVD 1lst 150 :LTAGRLD T0547 400 :Q 1lst 158 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=99216 # 1yovA.392.249 read from T0547.t06.many.frag # found chain 1yovA in template set Warning: unaligning (T0547)G395 (1yovA)G250 because G (3-10) conformation "forbidden" or filtered. T0547 392 :FDL 1yovA 247 :IRQ T0547 396 :YVDLQ 1yovA 251 :ILKNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=99218 # 1fpoA.392.71 read from T0547.t06.many.frag # found chain 1fpoA in training set T0547 392 :FDLGYVDLQ 1fpoA 72 :LSLHGFDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99219 # 1z90A.392.307 read from T0547.t06.many.frag # found chain 1z90A in template set T0547 392 :FDLGYVDLQ 1z90A 308 :VEADALKME Number of specific fragments extracted= 1 number of extra gaps= 0 total=99220 # 1qv9A.392.167 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 392 :FDLGYVDLQ 1qv9A 168 :AKEDEISEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=99221 # 1ywmA.392.47 read from T0547.t06.many.frag # found chain 1ywmA in template set T0547 392 :FDLGYVDLQ 1ywmA 86 :VKLGKIDPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99222 # 2akaB.392.214 read from T0547.t06.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)L394 (2akaB)N222 because L (left) conformation "forbidden" or filtered. T0547 392 :FD 2akaB 220 :LE T0547 395 :GYVDLQ 2akaB 223 :KLLPLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=99224 # 1vyrA.392.311 read from T0547.t06.many.frag # found chain 1vyrA in training set Warning: unaligning (T0547)L399 (1vyrA)A319 because Y (epsilon') conformation "forbidden" or filtered. T0547 392 :FDLGYVD 1vyrA 312 :IGKGLID T0547 400 :Q 1vyrA 320 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=99226 # 1jihA.392.294 read from T0547.t06.many.frag # found chain 1jihA in template set T0547 392 :FDLGYVDLQ 1jihA 295 :LDCGKFEIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=99227 # 1cf7B.392.71 read from T0547.t06.many.frag # found chain 1cf7B in template set Warning: unaligning (T0547)L399 (1cf7B)K138 because L (left) conformation "forbidden" or filtered. T0547 392 :FDLGYVD 1cf7B 131 :MAMNIIS T0547 400 :Q 1cf7B 139 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=99229 # 1j0dA.392.306 read from T0547.t06.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)Q400 (1j0dA)G315 because T (delta_L) conformation "forbidden" or filtered. T0547 392 :FDLGYVDL 1j0dA 307 :IKEDYFKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=99230 # 2f22A.392.54 read from T0547.t06.many.frag # found chain 2f22A in training set Warning: unaligning (T0547)D398 (2f22A)K60 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (2f22A)P62 because C (cis) conformation "forbidden" or filtered. T0547 392 :FDLGYV 2f22A 54 :LKTGSI T0547 399 :L 2f22A 61 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=99232 2a6hE expands to /projects/compbio/data/pdb/2a6h.pdb.gz 2a6hE:# 2a6hE.392.67 read from T0547.t06.many.frag # adding 2a6hE to template set # found chain 2a6hE in template set T0547 392 :FDLGYVDLQ 2a6hE 68 :LLTGRLVFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99233 # 1epuA.392.490 read from T0547.t06.many.frag # found chain 1epuA in template set T0547 392 :FDLGYVDLQ 1epuA 491 :AVEDKLDTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=99234 # 1e0tA.392.386 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)G395 (1e0tA)Y390 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y396 (1e0tA)F391 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1e0tA)T395 because P (beta_P) conformation "forbidden" or filtered. T0547 392 :FDL 1e0tA 387 :VRK T0547 397 :VDL 1e0tA 392 :PDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=99236 # 1m6eX.392.266 read from T0547.t06.many.frag # found chain 1m6eX in template set Warning: unaligning (T0547)Q400 (1m6eX)D275 because Y (epsilon') conformation "forbidden" or filtered. T0547 392 :FDLGYVDL 1m6eX 267 :LKEGSFLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=99237 # 1kpsB.392.129 read from T0547.t06.many.frag # found chain 1kpsB in template set Warning: unaligning (T0547)D398 (1kpsB)P554 because P (beta_P) conformation "forbidden" or filtered. T0547 392 :FDLGYV 1kpsB 548 :VRQDYF T0547 399 :LQ 1kpsB 555 :KA Number of specific fragments extracted= 2 number of extra gaps= 1 total=99239 # 1r5iD.392.195 read from T0547.t06.many.frag # found chain 1r5iD in template set T0547 392 :FDLGYVDLQ 1r5iD 193 :YYEGDIELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99240 # 1wy6A.392.63 read from T0547.t06.many.frag # found chain 1wy6A in template set T0547 392 :FDLGYVDLQ 1wy6A 65 :KIGSYFDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99241 # 1mnnA.392.221 read from T0547.t06.many.frag # found chain 1mnnA in training set Warning: unaligning (T0547)D398 (1mnnA)N228 because N (gamma') conformation "forbidden" or filtered. T0547 392 :FDLGYV 1mnnA 222 :LHRDHV T0547 399 :LQ 1mnnA 229 :YE Number of specific fragments extracted= 2 number of extra gaps= 1 total=99243 # 1pa7A.393.51 read from T0547.t06.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)D398 (1pa7A)A57 because N (gamma') conformation "forbidden" or filtered. T0547 393 :DLGYV 1pa7A 52 :FPGSI T0547 399 :LQD 1pa7A 58 :LKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=99245 # 1iicA.393.197 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 393 :DLGYVDLQD 1iicA 231 :EVDFTGLPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99246 # 1wy6A.393.64 read from T0547.t06.many.frag # found chain 1wy6A in template set T0547 393 :DLGYVDLQD 1wy6A 66 :IGSYFDLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99247 # 2cx6A.393.42 read from T0547.t06.many.frag # found chain 2cx6A in template set Warning: unaligning (T0547)D398 (2cx6A)P48 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (2cx6A)P50 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (2cx6A)L51 because Y (epsilon') conformation "forbidden" or filtered. T0547 393 :DLGYV 2cx6A 43 :MNDVL T0547 399 :L 2cx6A 49 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=99249 # 1r0vA.393.190 read from T0547.t06.many.frag # found chain 1r0vA in template set T0547 393 :DLGYVDLQD 1r0vA 191 :DLGKLNLLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=99250 # 1lrv.393.93 read from T0547.t06.many.frag # found chain 1lrv in template set T0547 393 :DLGYVDLQD 1lrv 94 :VAYRLPREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=99251 # 1wpuA.393.85 read from T0547.t06.many.frag # found chain 1wpuA in training set Warning: unaligning (T0547)L394 (1wpuA)R88 because L (left) conformation "forbidden" or filtered. T0547 393 :D 1wpuA 87 :T T0547 395 :GYVDLQD 1wpuA 89 :GEMLLGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=99253 # 1tbfA.393.228 read from T0547.t06.many.frag # found chain 1tbfA in training set T0547 393 :DLGYVDLQD 1tbfA 740 :RKNQFNLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=99254 # 1bkrA.393.44 read from T0547.t06.many.frag # found chain 1bkrA in training set T0547 393 :DLGYVDLQD 1bkrA 45 :RPDLIDFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99255 # 1v7zA.393.190 read from T0547.t06.many.frag # found chain 1v7zA in training set T0547 393 :DLGYVDLQD 1v7zA 191 :YPDLVDLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=99256 # 2ab5A.393.121 read from T0547.t06.many.frag # found chain 2ab5A in template set T0547 393 :DLGYVDLQD 2ab5A 370 :LKDIKYYND Number of specific fragments extracted= 1 number of extra gaps= 0 total=99257 # 1h6fA.393.99 read from T0547.t06.many.frag # found chain 1h6fA in training set T0547 393 :DLGYVDLQD 1h6fA 198 :MSKVVTFHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99258 # 1yovA.393.250 read from T0547.t06.many.frag # found chain 1yovA in template set Warning: unaligning (T0547)D398 (1yovA)K253 because E (beta_S) conformation "forbidden" or filtered. T0547 393 :DLGYV 1yovA 248 :RQGIL T0547 399 :LQD 1yovA 254 :NEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=99260 # 1s4cA.393.24 read from T0547.t06.many.frag # found chain 1s4cA in template set T0547 393 :DLGYVDLQD 1s4cA 25 :YLNTLDLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99261 # 1y60A.393.98 read from T0547.t06.many.frag # found chain 1y60A in template set T0547 393 :DLGYVDLQD 1y60A 100 :AEGIIPADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=99262 # 1r5iD.393.196 read from T0547.t06.many.frag # found chain 1r5iD in template set T0547 393 :DLGYVDLQD 1r5iD 194 :YEGDIELKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=99263 # 1p99A.393.124 read from T0547.t06.many.frag # found chain 1p99A in template set T0547 393 :DLGYVDLQD 1p99A 125 :SDKIKDVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99264 # 1jihA.393.295 read from T0547.t06.many.frag # found chain 1jihA in template set Warning: unaligning (T0547)D398 (1jihA)E301 because E (beta_S) conformation "forbidden" or filtered. T0547 393 :DLGYV 1jihA 296 :DCGKF T0547 399 :LQD 1jihA 302 :ITS Number of specific fragments extracted= 2 number of extra gaps= 1 total=99266 # 1rv9A.393.183 read from T0547.t06.many.frag # found chain 1rv9A in training set T0547 393 :DLGYVDLQD 1rv9A 184 :CTPMPEAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=99267 # 1mixA.393.61 read from T0547.t06.many.frag # found chain 1mixA in training set T0547 393 :DLGYVDLQD 1mixA 256 :KPGFLELKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99268 # 1yge.393.292 read from T0547.t06.many.frag # found chain 1yge in training set Warning: unaligning (T0547)G395 (1yge)G295 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y396 (1yge)G296 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1yge)K298 because P (beta_P) conformation "forbidden" or filtered. T0547 393 :DL 1yge 293 :YE T0547 397 :V 1yge 297 :I T0547 399 :LQD 1yge 299 :LPR Number of specific fragments extracted= 3 number of extra gaps= 2 total=99271 # 1n8kA.393.335 read from T0547.t06.many.frag # found chain 1n8kA in training set T0547 393 :DLGYVDLQD 1n8kA 336 :MAKKFALDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99272 # 1t7lA.393.381 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)L394 (1t7lA)G351 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1t7lA)N358 because P (beta_P) conformation "forbidden" or filtered. T0547 393 :D 1t7lA 350 :E T0547 395 :GYVDLQ 1t7lA 352 :KTFDLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=99274 # 1nw1A.393.210 read from T0547.t06.many.frag # found chain 1nw1A in template set Warning: unaligning (T0547)G395 (1nw1A)H213 because P (beta_P) conformation "forbidden" or filtered. T0547 393 :DL 1nw1A 211 :AE T0547 396 :YVDLQD 1nw1A 214 :RFDLPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=99276 # 1gtkA.393.109 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)G395 (1gtkA)N112 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1gtkA)S115 because Y (epsilon') conformation "forbidden" or filtered. T0547 393 :DL 1gtkA 110 :SN T0547 396 :YV 1gtkA 113 :YD T0547 399 :LQD 1gtkA 116 :LDA Number of specific fragments extracted= 3 number of extra gaps= 2 total=99279 # 1ev7A.393.100 read from T0547.t06.many.frag # found chain 1ev7A in template set T0547 393 :DLGYVDLQD 1ev7A 101 :SQGAWMLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99280 # 1ywmA.393.48 read from T0547.t06.many.frag # found chain 1ywmA in template set T0547 393 :DLGYVDLQD 1ywmA 87 :KLGKIDPLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=99281 # 1uwkA.393.545 read from T0547.t06.many.frag # found chain 1uwkA in training set Warning: unaligning (T0547)G395 (1uwkA)Q548 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y396 (1uwkA)G549 because L (left) conformation "forbidden" or filtered. T0547 393 :DL 1uwkA 546 :KE T0547 397 :VDLQD 1uwkA 550 :LDLPM Number of specific fragments extracted= 2 number of extra gaps= 1 total=99283 # 1vlpA.393.322 read from T0547.t06.many.frag # found chain 1vlpA in training set Warning: unaligning (T0547)V397 (1vlpA)L315 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1vlpA)K319 because P (beta_P) conformation "forbidden" or filtered. T0547 393 :DLGY 1vlpA 311 :YHDV T0547 398 :DLQ 1vlpA 316 :KLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=99285 # 1cf7B.393.72 read from T0547.t06.many.frag # found chain 1cf7B in template set Warning: unaligning (T0547)L399 (1cf7B)K138 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1cf7B)K140 because L (left) conformation "forbidden" or filtered. T0547 393 :DLGYVD 1cf7B 132 :AMNIIS T0547 400 :Q 1cf7B 139 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=99287 # 1pa7A.394.52 read from T0547.t06.many.frag # found chain 1pa7A in training set T0547 394 :LGYVDLQDR 1pa7A 53 :PGSIALKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99288 # 1wy6A.394.65 read from T0547.t06.many.frag # found chain 1wy6A in template set Warning: unaligning (T0547)R402 (1wy6A)C75 because P (beta_P) conformation "forbidden" or filtered. T0547 394 :LGYVDLQD 1wy6A 67 :GSYFDLDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=99289 # 1iicA.394.198 read from T0547.t06.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)Y396 (1iicA)F234 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1iicA)G240 because T (delta_L) conformation "forbidden" or filtered. T0547 394 :LG 1iicA 232 :VD T0547 397 :VDLQD 1iicA 235 :TGLPD Number of specific fragments extracted= 2 number of extra gaps= 2 total=99291 # 1r0vA.394.191 read from T0547.t06.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)R402 (1r0vA)A200 because Y (epsilon') conformation "forbidden" or filtered. T0547 394 :LGYVDLQD 1r0vA 192 :LGKLNLLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=99292 # 1tbfA.394.229 read from T0547.t06.many.frag # found chain 1tbfA in training set T0547 394 :LGYVDLQDR 1tbfA 741 :KNQFNLEDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99293 # 1lrv.394.94 read from T0547.t06.many.frag # found chain 1lrv in template set T0547 394 :LGYVDLQDR 1lrv 95 :AYRLPREQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99294 # 1gtkA.394.110 read from T0547.t06.many.frag # found chain 1gtkA in training set T0547 394 :LGYVDLQDR 1gtkA 111 :NNYDSLDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99295 # 1p99A.394.125 read from T0547.t06.many.frag # found chain 1p99A in template set T0547 394 :LGYVDLQDR 1p99A 126 :DKIKDVKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99296 # 1wpuA.394.86 read from T0547.t06.many.frag # found chain 1wpuA in training set T0547 394 :LGYVDLQDR 1wpuA 88 :RGEMLLGSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99297 # 1s4cA.394.25 read from T0547.t06.many.frag # found chain 1s4cA in template set T0547 394 :LGYVDLQDR 1s4cA 26 :LNTLDLNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99298 # 1dpgA.394.318 read from T0547.t06.many.frag # found chain 1dpgA in template set T0547 394 :LGYVDLQDR 1dpgA 319 :ELQFDLPRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=99299 # 2cx6A.394.43 read from T0547.t06.many.frag # found chain 2cx6A in template set Warning: unaligning (T0547)Q400 (2cx6A)P50 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (2cx6A)L51 because Y (epsilon') conformation "forbidden" or filtered. T0547 394 :LGYVDL 2cx6A 44 :NDVLPL T0547 402 :R 2cx6A 52 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=99301 # 1uwkA.394.546 read from T0547.t06.many.frag # found chain 1uwkA in training set Warning: unaligning (T0547)G395 (1uwkA)Q548 because G (3-10) conformation "forbidden" or filtered. T0547 394 :L 1uwkA 547 :E T0547 396 :YVDLQDR 1uwkA 549 :GLDLPMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=99303 # 1mg4A.394.73 read from T0547.t06.many.frag # found chain 1mg4A in training set Warning: unaligning (T0547)G395 (1mg4A)K116 because P (beta_P) conformation "forbidden" or filtered. T0547 394 :L 1mg4A 115 :K T0547 396 :YVDLQDR 1mg4A 117 :ISSLDQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99305 # 1bkrA.394.45 read from T0547.t06.many.frag # found chain 1bkrA in training set T0547 394 :LGYVDLQDR 1bkrA 46 :PDLIDFDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99306 # 1v7zA.394.191 read from T0547.t06.many.frag # found chain 1v7zA in training set T0547 394 :LGYVDLQDR 1v7zA 192 :PDLVDLDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99307 # 2ab5A.394.122 read from T0547.t06.many.frag # found chain 2ab5A in template set Warning: unaligning (T0547)V397 (2ab5A)K374 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (2ab5A)Y375 because E (beta_S) conformation "forbidden" or filtered. T0547 394 :LGY 2ab5A 371 :KDI T0547 399 :LQDR 2ab5A 376 :YNDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99309 # 1yovA.394.251 read from T0547.t06.many.frag # found chain 1yovA in template set Warning: unaligning (T0547)G395 (1yovA)G250 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1yovA)K253 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1yovA)G257 because T (delta_L) conformation "forbidden" or filtered. T0547 394 :L 1yovA 249 :Q T0547 396 :YV 1yovA 251 :IL T0547 399 :LQD 1yovA 254 :NEN Number of specific fragments extracted= 3 number of extra gaps= 3 total=99312 # 1bc5A.394.149 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)V397 (1bc5A)Y168 because Y (epsilon') conformation "forbidden" or filtered. T0547 394 :LGY 1bc5A 165 :SGI T0547 398 :DLQDR 1bc5A 169 :RLSEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99314 # 1mixA.394.62 read from T0547.t06.many.frag # found chain 1mixA in training set T0547 394 :LGYVDLQDR 1mixA 257 :PGFLELKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=99315 1aihA expands to /projects/compbio/data/pdb/1aih.pdb.gz 1aihA:# 1aihA.394.100 read from T0547.t06.many.frag # adding 1aihA to template set # found chain 1aihA in template set Warning: unaligning (T0547)Y396 (1aihA)E270 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1aihA)E272 because P (beta_P) conformation "forbidden" or filtered. T0547 394 :LG 1aihA 268 :RA T0547 397 :V 1aihA 271 :I T0547 399 :LQDR 1aihA 273 :LPKG Number of specific fragments extracted= 3 number of extra gaps= 2 total=99318 # 1ta8A.394.158 read from T0547.t06.many.frag # found chain 1ta8A in training set Warning: unaligning (T0547)G395 (1ta8A)V160 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1ta8A)R163 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1ta8A)E166 because E (beta_S) conformation "forbidden" or filtered. T0547 394 :L 1ta8A 159 :S T0547 396 :YV 1ta8A 161 :PM T0547 399 :LQ 1ta8A 164 :LT T0547 402 :R 1ta8A 167 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=99322 # 1h6fA.394.100 read from T0547.t06.many.frag # found chain 1h6fA in training set T0547 394 :LGYVDLQDR 1h6fA 199 :SKVVTFHKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99323 # 1xv5A.394.186 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)G395 (1xv5A)Y1187 because G (3-10) conformation "forbidden" or filtered. T0547 394 :L 1xv5A 1186 :T T0547 396 :YVDLQDR 1xv5A 1188 :WKDVSEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=99325 # 1ev7A.394.101 read from T0547.t06.many.frag # found chain 1ev7A in template set Warning: unaligning (T0547)Y396 (1ev7A)A104 because G (3-10) conformation "forbidden" or filtered. T0547 394 :LG 1ev7A 102 :QG T0547 397 :VDLQDR 1ev7A 105 :WMLPPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=99327 # 1t7lA.394.382 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)L394 (1t7lA)G351 because T (delta_L) conformation "forbidden" or filtered. T0547 395 :GYVDLQDR 1t7lA 352 :KTFDLPNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=99328 # 1r5iD.394.197 read from T0547.t06.many.frag # found chain 1r5iD in template set T0547 394 :LGYVDLQDR 1r5iD 195 :EGDIELKTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=99329 # 1qv9A.394.169 read from T0547.t06.many.frag # found chain 1qv9A in training set T0547 394 :LGYVDLQDR 1qv9A 170 :EDEISENDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99330 # 2bhuA.394.493 read from T0547.t06.many.frag # found chain 2bhuA in training set T0547 394 :LGYVDLQDR 2bhuA 494 :NSKLNWAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=99331 # 1nw1A.394.211 read from T0547.t06.many.frag # found chain 1nw1A in template set Warning: unaligning (T0547)G395 (1nw1A)H213 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q400 (1nw1A)P218 because P (beta_P) conformation "forbidden" or filtered. T0547 394 :L 1nw1A 212 :E T0547 396 :YVDL 1nw1A 214 :RFDL T0547 401 :DR 1nw1A 219 :EE Number of specific fragments extracted= 3 number of extra gaps= 2 total=99334 # 1pa7A.395.53 read from T0547.t06.many.frag # found chain 1pa7A in training set T0547 395 :GYVDLQDRS 1pa7A 54 :GSIALKKVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99335 # 1wy6A.395.66 read from T0547.t06.many.frag # found chain 1wy6A in template set Warning: unaligning (T0547)Y396 (1wy6A)Y69 because G (3-10) conformation "forbidden" or filtered. T0547 395 :G 1wy6A 68 :S T0547 397 :VDLQDRS 1wy6A 70 :FDLDKCQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=99337 # 1iicA.395.199 read from T0547.t06.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)R402 (1iicA)G240 because T (delta_L) conformation "forbidden" or filtered. T0547 395 :GYVDLQD 1iicA 233 :DFTGLPD T0547 403 :S 1iicA 241 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=99339 # 1p99A.395.126 read from T0547.t06.many.frag # found chain 1p99A in template set Warning: unaligning (T0547)D398 (1p99A)D130 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (1p99A)K135 because P (beta_P) conformation "forbidden" or filtered. T0547 395 :GYV 1p99A 127 :KIK T0547 399 :LQDR 1p99A 131 :VKKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=99341 # 1s4cA.395.26 read from T0547.t06.many.frag # found chain 1s4cA in template set T0547 395 :GYVDLQDRS 1s4cA 27 :NTLDLNALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=99342 # 1r0vA.395.192 read from T0547.t06.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)R402 (1r0vA)A200 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (1r0vA)D201 because Y (epsilon') conformation "forbidden" or filtered. T0547 395 :GYVDLQD 1r0vA 193 :GKLNLLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=99343 # 1gtkA.395.111 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)G395 (1gtkA)N112 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1gtkA)S115 because Y (epsilon') conformation "forbidden" or filtered. T0547 396 :YV 1gtkA 113 :YD T0547 399 :LQDRS 1gtkA 116 :LDALP Number of specific fragments extracted= 2 number of extra gaps= 2 total=99345 # 1dpgA.395.319 read from T0547.t06.many.frag # found chain 1dpgA in template set T0547 395 :GYVDLQDRS 1dpgA 320 :LQFDLPRWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=99346 # 1lrv.395.95 read from T0547.t06.many.frag # found chain 1lrv in template set Warning: unaligning (T0547)D398 (1lrv)P99 because P (beta_P) conformation "forbidden" or filtered. T0547 395 :GYV 1lrv 96 :YRL T0547 399 :LQDRS 1lrv 100 :REQLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=99348 # 1mg4A.395.74 read from T0547.t06.many.frag # found chain 1mg4A in training set Warning: unaligning (T0547)R402 (1mg4A)L123 because P (beta_P) conformation "forbidden" or filtered. T0547 395 :GYVDLQD 1mg4A 116 :KISSLDQ T0547 403 :S 1mg4A 124 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=99350 # 1wpuA.395.87 read from T0547.t06.many.frag # found chain 1wpuA in training set Warning: unaligning (T0547)S403 (1wpuA)L97 because L (left) conformation "forbidden" or filtered. T0547 395 :GYVDLQDR 1wpuA 89 :GEMLLGSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=99351 # 1aihA.395.101 read from T0547.t06.many.frag # found chain 1aihA in template set Warning: unaligning (T0547)Y396 (1aihA)E270 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1aihA)G276 because L (left) conformation "forbidden" or filtered. T0547 395 :G 1aihA 269 :A T0547 397 :VDLQD 1aihA 271 :IELPK T0547 403 :S 1aihA 277 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=99354 # 1bkrA.395.46 read from T0547.t06.many.frag # found chain 1bkrA in training set T0547 395 :GYVDLQDRS 1bkrA 47 :DLIDFDKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99355 # 1tbfA.395.230 read from T0547.t06.many.frag # found chain 1tbfA in training set T0547 395 :GYVDLQDRS 1tbfA 742 :NQFNLEDPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=99356 # 1uwkA.395.547 read from T0547.t06.many.frag # found chain 1uwkA in training set Warning: unaligning (T0547)G395 (1uwkA)Q548 because G (3-10) conformation "forbidden" or filtered. T0547 396 :YVDLQDRS 1uwkA 549 :GLDLPMIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=99357 # 1v7zA.395.192 read from T0547.t06.many.frag # found chain 1v7zA in training set T0547 395 :GYVDLQDRS 1v7zA 193 :DLVDLDRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99358 # 1ra6A.395.313 read from T0547.t06.many.frag # found chain 1ra6A in template set Warning: unaligning (T0547)Y396 (1ra6A)G315 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1ra6A)L321 because P (beta_P) conformation "forbidden" or filtered. T0547 395 :G 1ra6A 314 :K T0547 397 :VDLQD 1ra6A 316 :IDLDH T0547 403 :S 1ra6A 322 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=99361 # 1hqz1.395.68 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)R402 (1hqz1)S76 because Y (epsilon') conformation "forbidden" or filtered. T0547 395 :GYVDLQD 1hqz1 69 :ARVSPPG T0547 403 :S 1hqz1 77 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=99363 # 1bc5A.395.150 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D398 (1bc5A)R169 because P (beta_P) conformation "forbidden" or filtered. T0547 395 :GYV 1bc5A 166 :GIY T0547 399 :LQDRS 1bc5A 170 :LSELK Number of specific fragments extracted= 2 number of extra gaps= 1 total=99365 # 1ev7A.395.102 read from T0547.t06.many.frag # found chain 1ev7A in template set Warning: unaligning (T0547)D398 (1ev7A)M106 because N (gamma') conformation "forbidden" or filtered. T0547 395 :GYV 1ev7A 103 :GAW T0547 399 :LQDRS 1ev7A 107 :LPPES Number of specific fragments extracted= 2 number of extra gaps= 1 total=99367 # 2evrA.395.164 read from T0547.t06.many.frag # found chain 2evrA in template set T0547 395 :GYVDLQDRS 2evrA 153 :QPITIAELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99368 # 1mixA.395.63 read from T0547.t06.many.frag # found chain 1mixA in training set T0547 395 :GYVDLQDRS 1mixA 258 :GFLELKDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99369 # 1zkdA.395.138 read from T0547.t06.many.frag # found chain 1zkdA in template set T0547 395 :GYVDLQDRS 1zkdA 139 :WHDSFEDVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99370 # 1gsa.395.196 read from T0547.t06.many.frag # found chain 1gsa in template set Warning: unaligning (T0547)G395 (1gsa)A197 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1gsa)Y200 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YV 1gsa 198 :QN T0547 399 :LQDRS 1gsa 201 :LPAIK Number of specific fragments extracted= 2 number of extra gaps= 2 total=99372 # 2cxhA.395.127 read from T0547.t06.many.frag # found chain 2cxhA in training set Warning: unaligning (T0547)G395 (2cxhA)R108 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y396 (2cxhA)R109 because L (left) conformation "forbidden" or filtered. T0547 397 :VDLQDRS 2cxhA 110 :WGLPSLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=99373 # 1us5A.395.153 read from T0547.t06.many.frag # found chain 1us5A in training set Warning: unaligning (T0547)G395 (1us5A)Y154 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y396 (1us5A)G155 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1us5A)T157 because Y (epsilon') conformation "forbidden" or filtered. T0547 397 :V 1us5A 156 :L T0547 399 :LQDRS 1us5A 158 :FDDLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=99375 # 1kwgA.395.387 read from T0547.t06.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)D398 (1kwgA)A391 because P (beta_P) conformation "forbidden" or filtered. T0547 395 :GYV 1kwgA 388 :AAL T0547 399 :LQDRS 1kwgA 392 :LPPVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=99377 # 1at0.395.13 read from T0547.t06.many.frag # found chain 1at0 in template set T0547 395 :GYVDLQDRS 1at0 271 :VRKPLGELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=99378 # 1r5iD.395.198 read from T0547.t06.many.frag # found chain 1r5iD in template set T0547 395 :GYVDLQDRS 1r5iD 196 :GDIELKTTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=99379 # 1t7lA.395.383 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)V397 (1t7lA)F354 because G (3-10) conformation "forbidden" or filtered. T0547 395 :GY 1t7lA 352 :KT T0547 398 :DLQDRS 1t7lA 355 :DLPNVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=99381 # 1wy6A.396.67 read from T0547.t06.many.frag # found chain 1wy6A in template set Warning: unaligning (T0547)N404 (1wy6A)N77 because G (3-10) conformation "forbidden" or filtered. T0547 396 :YVDLQDRS 1wy6A 69 :YFDLDKCQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=99382 # 1p99A.396.127 read from T0547.t06.many.frag # found chain 1p99A in template set T0547 396 :YVDLQDRSN 1p99A 128 :IKDVKKVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99383 # 1gtkA.396.112 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)D398 (1gtkA)S115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (1gtkA)P120 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YV 1gtkA 113 :YD T0547 399 :LQDR 1gtkA 116 :LDAL T0547 404 :N 1gtkA 121 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=99386 # 1pa7A.396.54 read from T0547.t06.many.frag # found chain 1pa7A in training set T0547 396 :YVDLQDRSN 1pa7A 55 :SIALKKVKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=99387 # 1zkdA.396.139 read from T0547.t06.many.frag # found chain 1zkdA in template set T0547 396 :YVDLQDRSN 1zkdA 140 :HDSFEDVPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=99388 # 1at0.396.14 read from T0547.t06.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)N404 (1at0)I280 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQDRS 1at0 272 :RKPLGELS Number of specific fragments extracted= 1 number of extra gaps= 1 total=99389 # 1gsa.396.197 read from T0547.t06.many.frag # found chain 1gsa in template set T0547 396 :YVDLQDRSN 1gsa 198 :QNYLPAIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99390 # 1s4cA.396.27 read from T0547.t06.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)R402 (1s4cA)L34 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQD 1s4cA 28 :TLDLNA T0547 403 :SN 1s4cA 35 :EN Number of specific fragments extracted= 2 number of extra gaps= 1 total=99392 # 1dpgA.396.320 read from T0547.t06.many.frag # found chain 1dpgA in template set T0547 396 :YVDLQDRSN 1dpgA 321 :QFDLPRWEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99393 # 1mg4A.396.75 read from T0547.t06.many.frag # found chain 1mg4A in training set T0547 396 :YVDLQDRSN 1mg4A 117 :ISSLDQLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=99394 # 2cxhA.396.128 read from T0547.t06.many.frag # found chain 2cxhA in training set Warning: unaligning (T0547)Y396 (2cxhA)R109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (2cxhA)G111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (2cxhA)R116 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (2cxhA)G117 because S (epsilon) conformation "forbidden" or filtered. T0547 397 :V 2cxhA 110 :W T0547 399 :LQDR 2cxhA 112 :LPSL Number of specific fragments extracted= 2 number of extra gaps= 3 total=99396 # 7odcA.396.368 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D401 (7odcA)E374 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDLQ 7odcA 369 :RCNLP T0547 402 :RSN 7odcA 375 :MHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99398 # 1bkrA.396.47 read from T0547.t06.many.frag # found chain 1bkrA in training set T0547 396 :YVDLQDRSN 1bkrA 48 :LIDFDKLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99399 # 1r0vA.396.193 read from T0547.t06.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)S403 (1r0vA)D201 because Y (epsilon') conformation "forbidden" or filtered. T0547 396 :YVDLQDR 1r0vA 194 :KLNLLNA T0547 404 :N 1r0vA 202 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=99401 # 2ew0A.396.57 read from T0547.t06.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)Y396 (2ew0A)D58 because L (left) conformation "forbidden" or filtered. T0547 397 :VDLQDRSN 2ew0A 59 :IDADNVNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=99402 # 1ls1A.396.243 read from T0547.t06.many.frag # found chain 1ls1A in training set Warning: unaligning (T0547)D398 (1ls1A)K246 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (1ls1A)A251 because G (3-10) conformation "forbidden" or filtered. T0547 396 :YV 1ls1A 244 :LT T0547 399 :LQDR 1ls1A 247 :LDGD T0547 404 :N 1ls1A 252 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=99405 # 2evrA.396.165 read from T0547.t06.many.frag # found chain 2evrA in template set T0547 396 :YVDLQDRSN 2evrA 154 :PITIAELVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99406 # 1xkpA.396.114 read from T0547.t06.many.frag # found chain 1xkpA in training set Warning: unaligning (T0547)Y396 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xkpA)G148 Warning: unaligning (T0547)D398 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xkpA)G148 Warning: unaligning (T0547)L399 (1xkpA)R149 because D (zeta) conformation "forbidden" or filtered. T0547 400 :QDRSN 1xkpA 150 :PELAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=99407 # 1kwgA.396.388 read from T0547.t06.many.frag # found chain 1kwgA in training set T0547 396 :YVDLQDRSN 1kwgA 389 :ALALPPVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=99408 # 1ra6A.396.314 read from T0547.t06.many.frag # found chain 1ra6A in template set T0547 396 :YVDLQDRSN 1ra6A 315 :GIDLDHLKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=99409 # 1iicA.396.200 read from T0547.t06.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)R402 (1iicA)G240 because T (delta_L) conformation "forbidden" or filtered. T0547 396 :YVDLQD 1iicA 234 :FTGLPD T0547 403 :SN 1iicA 241 :HT Number of specific fragments extracted= 2 number of extra gaps= 1 total=99411 1vqoU expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoU:# 1vqoU.396.42 read from T0547.t06.many.frag # adding 1vqoU to template set # found chain 1vqoU in template set T0547 396 :YVDLQDRSN 1vqoU 43 :GREARNLEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=99412 # 1hqz1.396.69 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)Q400 (1hqz1)P74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1hqz1)G75 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1hqz1)S76 because Y (epsilon') conformation "forbidden" or filtered. T0547 396 :YVDL 1hqz1 70 :RVSP T0547 403 :SN 1hqz1 77 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99414 # 1tbfA.396.231 read from T0547.t06.many.frag # found chain 1tbfA in training set T0547 396 :YVDLQDRSN 1tbfA 743 :QFNLEDPHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=99415 # 1uwkA.396.548 read from T0547.t06.many.frag # found chain 1uwkA in training set Warning: unaligning (T0547)N404 because last residue in template chain is (1uwkA)G557 T0547 396 :YVDLQDRS 1uwkA 549 :GLDLPMIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=99416 # 1txlA.396.148 read from T0547.t06.many.frag # found chain 1txlA in training set T0547 396 :YVDLQDRSN 1txlA 149 :ECKDPESKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99417 # 1lrv.396.96 read from T0547.t06.many.frag # found chain 1lrv in template set Warning: unaligning (T0547)Y396 (1lrv)R97 because G (3-10) conformation "forbidden" or filtered. T0547 397 :VDLQDRSN 1lrv 98 :LPREQLSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=99418 # 1zeqX.396.51 read from T0547.t06.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)Q400 (1zeqX)S60 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1zeqX)T64 because P (beta_P) conformation "forbidden" or filtered. T0547 396 :YVDL 1zeqX 56 :QTKM T0547 401 :DRS 1zeqX 61 :EIK Number of specific fragments extracted= 2 number of extra gaps= 2 total=99420 # 1aihA.396.102 read from T0547.t06.many.frag # found chain 1aihA in template set Warning: unaligning (T0547)Y396 (1aihA)E270 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1aihA)E272 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1aihA)G276 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (1aihA)Q277 because G (3-10) conformation "forbidden" or filtered. T0547 397 :V 1aihA 271 :I T0547 399 :LQD 1aihA 273 :LPK T0547 404 :N 1aihA 278 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=99423 # 1i8dA.396.69 read from T0547.t06.many.frag # found chain 1i8dA in template set T0547 396 :YVDLQDRSN 1i8dA 70 :ITNLGDLKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99424 # 1at0.397.15 read from T0547.t06.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)D398 (1at0)P274 because P (beta_P) conformation "forbidden" or filtered. T0547 397 :V 1at0 273 :K T0547 399 :LQDRSNA 1at0 275 :LGELSIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=99426 # 7odcA.397.369 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 397 :VDLQDRSNA 7odcA 370 :CNLPEMHVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99427 # 1gtkA.397.113 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)V397 (1gtkA)D114 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1gtkA)S115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (1gtkA)P120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1gtkA)G122 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQDR 1gtkA 116 :LDAL T0547 404 :N 1gtkA 121 :A Number of specific fragments extracted= 2 number of extra gaps= 3 total=99429 # 1p99A.397.128 read from T0547.t06.many.frag # found chain 1p99A in template set Warning: unaligning (T0547)V397 (1p99A)K129 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1p99A)D136 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1p99A)G137 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :DLQDRS 1p99A 130 :DVKKVK Number of specific fragments extracted= 1 number of extra gaps= 2 total=99430 # 1wy6A.397.68 read from T0547.t06.many.frag # found chain 1wy6A in template set T0547 397 :VDLQDRSNA 1wy6A 70 :FDLDKCQNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99431 # 1zkdA.397.140 read from T0547.t06.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)R402 (1zkdA)V146 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1zkdA)E148 because P (beta_P) conformation "forbidden" or filtered. T0547 397 :VDLQD 1zkdA 141 :DSFED T0547 403 :S 1zkdA 147 :P T0547 405 :A 1zkdA 149 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=99434 # 1mg4A.397.76 read from T0547.t06.many.frag # found chain 1mg4A in training set Warning: unaligning (T0547)V397 (1mg4A)S118 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D398 (1mg4A)S119 because E (beta_S) conformation "forbidden" or filtered. T0547 399 :LQDRSNA 1mg4A 120 :LDQLVEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=99435 # 2cxhA.397.129 read from T0547.t06.many.frag # found chain 2cxhA in training set Warning: unaligning (T0547)D398 (2cxhA)G111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (2cxhA)G117 because S (epsilon) conformation "forbidden" or filtered. T0547 397 :V 2cxhA 110 :W T0547 399 :LQDRS 2cxhA 112 :LPSLR T0547 405 :A 2cxhA 118 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=99438 # 2evrA.397.166 read from T0547.t06.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)N404 (2evrA)A162 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (2evrA)G163 because T (delta_L) conformation "forbidden" or filtered. T0547 397 :VDLQDRS 2evrA 155 :ITIAELV Number of specific fragments extracted= 1 number of extra gaps= 1 total=99439 # 1i8dA.397.70 read from T0547.t06.many.frag # found chain 1i8dA in template set T0547 397 :VDLQDRSNA 1i8dA 71 :TNLGDLKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99440 # 1gsa.397.198 read from T0547.t06.many.frag # found chain 1gsa in template set Warning: unaligning (T0547)A405 (1gsa)G207 because S (epsilon) conformation "forbidden" or filtered. T0547 397 :VDLQDRSN 1gsa 199 :NYLPAIKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=99441 # 2ew0A.397.58 read from T0547.t06.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)A405 (2ew0A)H67 because Y (epsilon') conformation "forbidden" or filtered. T0547 397 :VDLQDRSN 2ew0A 59 :IDADNVNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=99442 # 1ls1A.397.244 read from T0547.t06.many.frag # found chain 1ls1A in training set Warning: unaligning (T0547)D398 (1ls1A)K246 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1ls1A)G253 because T (delta_L) conformation "forbidden" or filtered. T0547 397 :V 1ls1A 245 :T T0547 399 :LQDRSN 1ls1A 247 :LDGDAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=99444 # 1hqz1.397.70 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)R402 (1hqz1)S76 because Y (epsilon') conformation "forbidden" or filtered. T0547 397 :VDLQD 1hqz1 71 :VSPPG T0547 403 :SNA 1hqz1 77 :DVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=99446 # 1xkpA.397.115 read from T0547.t06.many.frag # found chain 1xkpA in training set Warning: unaligning (T0547)D398 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xkpA)G148 Warning: unaligning (T0547)L399 (1xkpA)R149 because D (zeta) conformation "forbidden" or filtered. T0547 400 :QDRSNA 1xkpA 150 :PELAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99447 # 1s4cA.397.28 read from T0547.t06.many.frag # found chain 1s4cA in template set T0547 397 :VDLQDRSNA 1s4cA 29 :LDLNALENG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99448 # 1kwgA.397.389 read from T0547.t06.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)D401 (1kwgA)P394 because P (beta_P) conformation "forbidden" or filtered. T0547 397 :VDLQ 1kwgA 390 :LALP T0547 402 :RSNA 1kwgA 395 :VAQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=99450 # 1txlA.397.149 read from T0547.t06.many.frag # found chain 1txlA in training set Warning: unaligning (T0547)R402 (1txlA)S155 because P (beta_P) conformation "forbidden" or filtered. T0547 397 :VDLQD 1txlA 150 :CKDPE T0547 403 :SNA 1txlA 156 :KAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=99452 # 1bkrA.397.48 read from T0547.t06.many.frag # found chain 1bkrA in training set T0547 397 :VDLQDRSNA 1bkrA 49 :IDFDKLKKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=99453 # 2biwA.397.336 read from T0547.t06.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)D398 (2biwA)N338 because D (zeta) conformation "forbidden" or filtered. T0547 397 :V 2biwA 337 :T T0547 399 :LQDRSNA 2biwA 339 :FDNLDPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=99455 # 1zeqX.397.52 read from T0547.t06.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)D398 (1zeqX)K58 because N (gamma') conformation "forbidden" or filtered. T0547 397 :V 1zeqX 57 :T T0547 399 :LQDRSNA 1zeqX 59 :MSEIKTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=99457 # 1cliA.397.169 read from T0547.t06.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)L399 (1cliA)G172 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1cliA)G178 because T (delta_L) conformation "forbidden" or filtered. T0547 397 :VD 1cliA 170 :ID T0547 400 :QDRSN 1cliA 173 :SKVSD Number of specific fragments extracted= 2 number of extra gaps= 2 total=99459 # 1vqoU.397.43 read from T0547.t06.many.frag # found chain 1vqoU in template set Warning: unaligning (T0547)R402 (1vqoU)L49 because D (zeta) conformation "forbidden" or filtered. T0547 397 :VDLQD 1vqoU 44 :REARN T0547 403 :SNA 1vqoU 50 :EWT Number of specific fragments extracted= 2 number of extra gaps= 1 total=99461 # 1dpgA.397.321 read from T0547.t06.many.frag # found chain 1dpgA in template set Warning: unaligning (T0547)S403 (1dpgA)E328 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1dpgA)G329 because T (delta_L) conformation "forbidden" or filtered. T0547 397 :VDLQDR 1dpgA 322 :FDLPRW T0547 405 :A 1dpgA 330 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=99463 # 1jg1A.397.150 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)D398 (1jg1A)G152 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1jg1A)P158 because C (cis) conformation "forbidden" or filtered. T0547 397 :V 1jg1A 151 :K T0547 399 :LQDRS 1jg1A 153 :FPPKA T0547 405 :A 1jg1A 159 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=99466 # 1pa7A.397.55 read from T0547.t06.many.frag # found chain 1pa7A in training set Warning: unaligning (T0547)D398 (1pa7A)A57 because N (gamma') conformation "forbidden" or filtered. T0547 397 :V 1pa7A 56 :I T0547 399 :LQDRSNA 1pa7A 58 :LKKVKFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=99468 # 1gppA.397.25 read from T0547.t06.many.frag # found chain 1gppA in training set Warning: unaligning (T0547)R402 (1gppA)I21 because P (beta_P) conformation "forbidden" or filtered. T0547 397 :VDLQD 1gppA 16 :ECIEN T0547 403 :SNA 1gppA 22 :EVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=99470 # 2a74A.397.437 read from T0547.t06.many.frag # found chain 2a74A in template set Warning: unaligning (T0547)V397 because of BadResidue code BAD_PEPTIDE at template residue (2a74A)V438 Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2a74A)T441 Warning: unaligning (T0547)Q400 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2a74A)T441 Warning: unaligning (T0547)N404 (2a74A)P445 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (2a74A)G446 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :D 2a74A 439 :L T0547 401 :DRS 2a74A 442 :ELR Number of specific fragments extracted= 2 number of extra gaps= 3 total=99472 # 2ccwA.397.96 read from T0547.t06.many.frag # found chain 2ccwA in training set Warning: unaligning (T0547)A405 (2ccwA)G105 because T (delta_L) conformation "forbidden" or filtered. T0547 397 :VDLQDRSN 2ccwA 97 :FDVSKIAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=99473 # 1ra6A.397.315 read from T0547.t06.many.frag # found chain 1ra6A in template set T0547 397 :VDLQDRSNA 1ra6A 316 :IDLDHLKMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=99474 # 7odcA.398.370 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D401 (7odcA)E374 because P (beta_P) conformation "forbidden" or filtered. T0547 398 :DLQ 7odcA 371 :NLP T0547 402 :RSNAE 7odcA 375 :MHVGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=99476 # 1at0.398.16 read from T0547.t06.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)N404 (1at0)I280 because P (beta_P) conformation "forbidden" or filtered. T0547 398 :DLQDRS 1at0 274 :PLGELS T0547 405 :AE 1at0 281 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=99478 # 1gtkA.398.114 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)D398 (1gtkA)S115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1gtkA)A121 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQDRS 1gtkA 116 :LDALP T0547 405 :AE 1gtkA 122 :GS Number of specific fragments extracted= 2 number of extra gaps= 2 total=99480 # 1p99A.398.129 read from T0547.t06.many.frag # found chain 1p99A in template set Warning: unaligning (T0547)N404 (1p99A)D136 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1p99A)G137 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :DLQDRS 1p99A 130 :DVKKVK T0547 406 :E 1p99A 138 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=99482 # 1zkdA.398.141 read from T0547.t06.many.frag # found chain 1zkdA in template set T0547 398 :DLQDRSNAE 1zkdA 142 :SFEDVPEGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99483 # 1i8dA.398.71 read from T0547.t06.many.frag # found chain 1i8dA in template set T0547 398 :DLQDRSNAE 1i8dA 72 :NLGDLKVGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99484 # 2evrA.398.167 read from T0547.t06.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)R402 (2evrA)L160 because P (beta_P) conformation "forbidden" or filtered. T0547 398 :DLQD 2evrA 156 :TIAE T0547 403 :SNAE 2evrA 161 :VAGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=99486 # 1wy6A.398.69 read from T0547.t06.many.frag # found chain 1wy6A in template set T0547 398 :DLQDRSNAE 1wy6A 71 :DLDKCQNLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99487 # 2cxhA.398.130 read from T0547.t06.many.frag # found chain 2cxhA in training set Warning: unaligning (T0547)A405 (2cxhA)G118 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :DLQDRSN 2cxhA 111 :GLPSLRG T0547 406 :E 2cxhA 119 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=99489 # 1gsa.398.199 read from T0547.t06.many.frag # found chain 1gsa in template set T0547 398 :DLQDRSNAE 1gsa 200 :YLPAIKDGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99490 # 1mg4A.398.77 read from T0547.t06.many.frag # found chain 1mg4A in training set Warning: unaligning (T0547)D398 (1mg4A)S119 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1mg4A)E125 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQDRS 1mg4A 120 :LDQLV T0547 405 :AE 1mg4A 126 :GE Number of specific fragments extracted= 2 number of extra gaps= 2 total=99492 # 1jg1A.398.151 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)S403 (1jg1A)A157 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1jg1A)P158 because C (cis) conformation "forbidden" or filtered. T0547 398 :DLQDR 1jg1A 152 :GFPPK T0547 405 :AE 1jg1A 159 :YD Number of specific fragments extracted= 2 number of extra gaps= 1 total=99494 # 1xkpA.398.116 read from T0547.t06.many.frag # found chain 1xkpA in training set Warning: unaligning (T0547)D398 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xkpA)G148 T0547 399 :LQDRSNAE 1xkpA 149 :RPELAHLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=99495 # 1hqz1.398.71 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)D398 (1hqz1)S72 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1hqz1)G75 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1hqz1)S76 because Y (epsilon') conformation "forbidden" or filtered. T0547 399 :LQ 1hqz1 73 :PP T0547 403 :SNAE 1hqz1 77 :DVEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=99497 # 1knwA.398.359 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 398 :DLQDRSNAE 1knwA 360 :ALPEVKAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99498 # 2ew0A.398.59 read from T0547.t06.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)A405 (2ew0A)H67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2ew0A)E68 because P (beta_P) conformation "forbidden" or filtered. T0547 398 :DLQDRSN 2ew0A 60 :DADNVNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=99499 # 1kwgA.398.390 read from T0547.t06.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)A405 (1kwgA)A398 because P (beta_P) conformation "forbidden" or filtered. T0547 398 :DLQDRSN 1kwgA 391 :ALPPVAQ T0547 406 :E 1kwgA 399 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=99501 # 1cliA.398.170 read from T0547.t06.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)L399 (1cliA)G172 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1cliA)G178 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1cliA)D179 because P (beta_P) conformation "forbidden" or filtered. T0547 398 :D 1cliA 171 :D T0547 400 :QDRSN 1cliA 173 :SKVSD Number of specific fragments extracted= 2 number of extra gaps= 2 total=99503 # 1rlr.398.470 read from T0547.t06.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)D401 (1rlr)N474 because E (beta_S) conformation "forbidden" or filtered. T0547 398 :DLQ 1rlr 471 :AIN T0547 402 :RSNAE 1rlr 475 :LDELD Number of specific fragments extracted= 2 number of extra gaps= 1 total=99505 # 1txlA.398.150 read from T0547.t06.many.frag # found chain 1txlA in training set T0547 398 :DLQDRSNAE 1txlA 151 :KDPESKAPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99506 # 1ls1A.398.245 read from T0547.t06.many.frag # found chain 1ls1A in training set Warning: unaligning (T0547)D398 (1ls1A)K246 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1ls1A)G253 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQDRSN 1ls1A 247 :LDGDAR T0547 406 :E 1ls1A 254 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=99508 # 1zeqX.398.53 read from T0547.t06.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)Q400 (1zeqX)S60 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1zeqX)T64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1zeqX)G65 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :DL 1zeqX 58 :KM T0547 401 :DRS 1zeqX 61 :EIK T0547 406 :E 1zeqX 66 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=99511 # 2biwA.398.337 read from T0547.t06.many.frag # found chain 2biwA in template set T0547 398 :DLQDRSNAE 2biwA 338 :NFDNLDPGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=99512 # 2a74A.398.438 read from T0547.t06.many.frag # found chain 2a74A in template set Warning: unaligning (T0547)L399 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2a74A)T441 Warning: unaligning (T0547)Q400 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2a74A)T441 T0547 398 :D 2a74A 439 :L T0547 401 :DRSNAE 2a74A 442 :ELRPGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=99514 # 1f60A.398.313 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)S403 (1f60A)R319 because Y (epsilon') conformation "forbidden" or filtered. T0547 398 :DLQDR 1f60A 314 :SVKEI T0547 404 :NAE 1f60A 320 :RGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=99516 # 1gppA.398.26 read from T0547.t06.many.frag # found chain 1gppA in training set T0547 398 :DLQDRSNAE 1gppA 17 :CIENIEVGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=99517 # 2dpmA.398.180 read from T0547.t06.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)A405 (2dpmA)G188 because T (delta_L) conformation "forbidden" or filtered. T0547 398 :DLQDRSN 2dpmA 181 :AIVDVRT T0547 406 :E 2dpmA 189 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=99519 # 1wmmA.398.30 read from T0547.t06.many.frag # found chain 1wmmA in template set Warning: unaligning (T0547)A405 (1wmmA)G38 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1wmmA)D39 because P (beta_P) conformation "forbidden" or filtered. T0547 398 :DLQDRSN 1wmmA 31 :TLSRVKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=99520 # 1zupA.398.46 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)D401 (1zupA)E38 because P (beta_P) conformation "forbidden" or filtered. T0547 398 :DLQ 1zupA 35 :EQR T0547 402 :RSNAE 1zupA 39 :GEILD Number of specific fragments extracted= 2 number of extra gaps= 1 total=99522 # 1vqoU.398.44 read from T0547.t06.many.frag # found chain 1vqoU in template set Warning: unaligning (T0547)D398 (1vqoU)E45 because E (beta_S) conformation "forbidden" or filtered. T0547 399 :LQDRSNAE 1vqoU 46 :ARNLEWTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=99523 # 7odcA.399.371 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 399 :LQDRSNAEI 7odcA 372 :LPEMHVGDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=99524 # 1at0.399.17 read from T0547.t06.many.frag # found chain 1at0 in template set T0547 399 :LQDRSNAEI 1at0 275 :LGELSIGDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=99525 # 1i8dA.399.72 read from T0547.t06.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E406 (1i8dA)D80 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQDRSNA 1i8dA 73 :LGDLKVG T0547 407 :I 1i8dA 81 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=99527 # 2evrA.399.168 read from T0547.t06.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)A405 (2evrA)G163 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2evrA)D164 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQDRSN 2evrA 157 :IAELVA T0547 407 :I 2evrA 165 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=99529 # 1gtkA.399.115 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)R402 (1gtkA)L119 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1gtkA)A121 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQD 1gtkA 116 :LDA T0547 403 :S 1gtkA 120 :P T0547 405 :AEI 1gtkA 122 :GSI Number of specific fragments extracted= 3 number of extra gaps= 2 total=99532 # 1p99A.399.130 read from T0547.t06.many.frag # found chain 1p99A in template set Warning: unaligning (T0547)A405 (1p99A)G137 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1p99A)A138 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQDRSN 1p99A 131 :VKKVKD T0547 407 :I 1p99A 139 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=99534 # 1jg1A.399.152 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)N404 (1jg1A)P158 because C (cis) conformation "forbidden" or filtered. T0547 399 :LQDRS 1jg1A 153 :FPPKA T0547 405 :AEI 1jg1A 159 :YDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99536 # 1zkdA.399.142 read from T0547.t06.many.frag # found chain 1zkdA in template set T0547 399 :LQDRSNAEI 1zkdA 143 :FEDVPEGPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99537 # 1gsa.399.200 read from T0547.t06.many.frag # found chain 1gsa in template set Warning: unaligning (T0547)A405 (1gsa)G207 because S (epsilon) conformation "forbidden" or filtered. T0547 399 :LQDRSN 1gsa 201 :LPAIKD T0547 406 :EI 1gsa 208 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=99539 # 1knwA.399.360 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 399 :LQDRSNAEI 1knwA 361 :LPEVKAGDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99540 # 1mg4A.399.78 read from T0547.t06.many.frag # found chain 1mg4A in training set Warning: unaligning (T0547)A405 (1mg4A)G126 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQDRSN 1mg4A 120 :LDQLVE T0547 406 :EI 1mg4A 127 :ES Number of specific fragments extracted= 2 number of extra gaps= 1 total=99542 # 1hqz1.399.72 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)Q400 (1hqz1)P74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1hqz1)V78 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :L 1hqz1 73 :P T0547 401 :DRS 1hqz1 75 :GSD T0547 405 :AEI 1hqz1 79 :EKI Number of specific fragments extracted= 3 number of extra gaps= 2 total=99545 # 2dpmA.399.181 read from T0547.t06.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)A405 (2dpmA)G188 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQDRSN 2dpmA 182 :IVDVRT T0547 406 :EI 2dpmA 189 :DF Number of specific fragments extracted= 2 number of extra gaps= 1 total=99547 # 1rlr.399.471 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 399 :LQDRSNAEI 1rlr 472 :INNLDELDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=99548 # 1zupA.399.47 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)D401 (1zupA)E38 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQ 1zupA 36 :QR T0547 402 :RSNAEI 1zupA 39 :GEILDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=99550 # 1wy6A.399.70 read from T0547.t06.many.frag # found chain 1wy6A in template set Warning: unaligning (T0547)R402 (1wy6A)C75 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQD 1wy6A 72 :LDK T0547 403 :SNAEI 1wy6A 76 :QNLKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=99552 # 1xkpA.399.117 read from T0547.t06.many.frag # found chain 1xkpA in training set T0547 399 :LQDRSNAEI 1xkpA 149 :RPELAHLSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=99553 # 1txlA.399.151 read from T0547.t06.many.frag # found chain 1txlA in training set T0547 399 :LQDRSNAEI 1txlA 152 :DPESKAPKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99554 # 2ew0A.399.60 read from T0547.t06.many.frag # found chain 2ew0A in training set T0547 399 :LQDRSNAEI 2ew0A 61 :ADNVNPHEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99555 # 2cxhA.399.131 read from T0547.t06.many.frag # found chain 2cxhA in training set Warning: unaligning (T0547)E406 (2cxhA)E119 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQDRSNA 2cxhA 112 :LPSLRGG T0547 407 :I 2cxhA 120 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=99557 # 1wmmA.399.31 read from T0547.t06.many.frag # found chain 1wmmA in template set T0547 399 :LQDRSNAEI 1wmmA 32 :LSRVKPGDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99558 # 1kwgA.399.391 read from T0547.t06.many.frag # found chain 1kwgA in training set T0547 399 :LQDRSNAEI 1kwgA 392 :LPPVAQAPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99559 # 1cliA.399.171 read from T0547.t06.many.frag # found chain 1cliA in template set Warning: unaligning (T0547)L399 (1cliA)G172 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1cliA)D177 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1cliA)G178 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QDRS 1cliA 173 :SKVS T0547 406 :EI 1cliA 179 :DV Number of specific fragments extracted= 2 number of extra gaps= 2 total=99561 # 1zeqX.399.54 read from T0547.t06.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)N404 (1zeqX)T64 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQDRS 1zeqX 59 :MSEIK T0547 405 :AEI 1zeqX 65 :GDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=99563 # 1efdN.399.196 read from T0547.t06.many.frag # found chain 1efdN in template set T0547 399 :LQDRSNAEI 1efdN 227 :LAAYKDVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99564 # 1vqoL.399.97 read from T0547.t06.many.frag # found chain 1vqoL in template set Warning: unaligning (T0547)D401 (1vqoL)E99 because L (left) conformation "forbidden" or filtered. T0547 399 :LQ 1vqoL 97 :VE T0547 402 :RSNAEI 1vqoL 100 :ADDADY Number of specific fragments extracted= 2 number of extra gaps= 1 total=99566 # 1f60A.399.296 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)N404 (1f60A)P302 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1f60A)G303 because T (delta_L) conformation "forbidden" or filtered. T0547 399 :LQDRS 1f60A 297 :LEQGV T0547 406 :EI 1f60A 304 :DN Number of specific fragments extracted= 2 number of extra gaps= 1 total=99568 # 2be1A.399.3 read from T0547.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)D401 (2be1A)E116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (2be1A)S120 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQ 2be1A 114 :LN T0547 402 :RSN 2be1A 117 :LSL T0547 406 :EI 2be1A 121 :DI Number of specific fragments extracted= 3 number of extra gaps= 2 total=99571 # 2bwrA.399.288 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)Q400 (2bwrA)T290 because Y (epsilon') conformation "forbidden" or filtered. T0547 399 :L 2bwrA 289 :L T0547 401 :DRSNAEI 2bwrA 291 :NKKVGDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=99573 # 1f60A.399.314 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)S403 (1f60A)R319 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1f60A)R320 because P (beta_P) conformation "forbidden" or filtered. T0547 399 :LQDR 1f60A 315 :VKEI T0547 405 :AEI 1f60A 321 :GNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99575 # 2evrA.400.169 read from T0547.t06.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)N404 (2evrA)A162 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2evrA)D164 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :QDRS 2evrA 158 :AELV T0547 405 :A 2evrA 163 :G T0547 407 :IL 2evrA 165 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=99578 # 7odcA.400.372 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)N404 (7odcA)V377 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :QDRS 7odcA 373 :PEMH T0547 405 :AEIL 7odcA 378 :GDWM Number of specific fragments extracted= 2 number of extra gaps= 1 total=99580 # 1jg1A.400.153 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)N404 (1jg1A)P158 because C (cis) conformation "forbidden" or filtered. T0547 400 :QDRS 1jg1A 154 :PPKA T0547 405 :AEIL 1jg1A 159 :YDVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=99582 # 1at0.400.18 read from T0547.t06.many.frag # found chain 1at0 in template set T0547 400 :QDRSNAEIL 1at0 276 :GELSIGDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99583 # 2dpmA.400.182 read from T0547.t06.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)N404 (2dpmA)T187 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :QDRS 2dpmA 183 :VDVR T0547 405 :AEIL 2dpmA 188 :GDFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99585 # 1knwA.400.361 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A405 (1knwA)G367 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QDRSN 1knwA 362 :PEVKA T0547 406 :EIL 1knwA 368 :DYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99587 # 1gtkA.400.116 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)E406 (1gtkA)S123 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :QDRSNA 1gtkA 117 :DALPAG T0547 407 :IL 1gtkA 124 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99589 # 1i8dA.400.73 read from T0547.t06.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)E406 (1i8dA)D80 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :QDRSNA 1i8dA 74 :GDLKVG T0547 407 :IL 1i8dA 81 :WV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99591 # 2be1A.400.4 read from T0547.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)N404 (2be1A)L119 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :QDRS 2be1A 115 :NELS T0547 405 :AEIL 2be1A 120 :SDIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99593 # 1zkdA.400.143 read from T0547.t06.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)A405 (1zkdA)G149 because S (epsilon) conformation "forbidden" or filtered. T0547 400 :QDRSN 1zkdA 144 :EDVPE T0547 406 :EIL 1zkdA 150 :PAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99595 # 1zupA.400.48 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 400 :QDRSNAEIL 1zupA 37 :REGEILDQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=99596 # 1efdN.400.197 read from T0547.t06.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)E406 (1efdN)D234 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :QDRSNA 1efdN 228 :AAYKDV T0547 407 :IL 1efdN 235 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99598 # 1p99A.400.131 read from T0547.t06.many.frag # found chain 1p99A in template set Warning: unaligning (T0547)N404 (1p99A)D136 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :QDRS 1p99A 132 :KKVK T0547 405 :AEIL 1p99A 137 :GAKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99600 # 1mg4A.400.79 read from T0547.t06.many.frag # found chain 1mg4A in training set Warning: unaligning (T0547)A405 (1mg4A)G126 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QDRSN 1mg4A 121 :DQLVE T0547 406 :EIL 1mg4A 127 :ESY Number of specific fragments extracted= 2 number of extra gaps= 1 total=99602 # 1rlr.400.472 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 400 :QDRSNAEIL 1rlr 473 :NNLDELDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99603 # 1wmmA.400.32 read from T0547.t06.many.frag # found chain 1wmmA in template set Warning: unaligning (T0547)A405 (1wmmA)G38 because T (delta_L) conformation "forbidden" or filtered. T0547 400 :QDRSN 1wmmA 33 :SRVKP T0547 406 :EIL 1wmmA 39 :DKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99605 # 1txlA.400.152 read from T0547.t06.many.frag # found chain 1txlA in training set T0547 400 :QDRSNAEIL 1txlA 153 :PESKAPKYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=99606 # 1hqz1.400.73 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)D401 (1hqz1)G75 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)R402 (1hqz1)S76 because Y (epsilon') conformation "forbidden" or filtered. T0547 400 :Q 1hqz1 74 :P T0547 403 :SNAEIL 1hqz1 77 :DVEKII Number of specific fragments extracted= 2 number of extra gaps= 1 total=99608 # 1gsa.400.201 read from T0547.t06.many.frag # found chain 1gsa in template set T0547 400 :QDRSNAEIL 1gsa 202 :PAIKDGDKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=99609 # 2ew0A.400.61 read from T0547.t06.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)R402 (2ew0A)V64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (2ew0A)H67 because Y (epsilon') conformation "forbidden" or filtered. T0547 400 :QD 2ew0A 62 :DN T0547 403 :SN 2ew0A 65 :NP T0547 406 :EIL 2ew0A 68 :EVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=99612 # 1f60A.400.315 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)S403 (1f60A)R319 because Y (epsilon') conformation "forbidden" or filtered. T0547 400 :QDR 1f60A 316 :KEI T0547 404 :NAEIL 1f60A 320 :RGNVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=99614 # 1kwgA.400.392 read from T0547.t06.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)Q400 (1kwgA)P393 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1kwgA)P394 because P (beta_P) conformation "forbidden" or filtered. T0547 402 :RSNAEIL 1kwgA 395 :VAQAPVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=99615 # 2bwrA.400.289 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)Q400 (2bwrA)T290 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (2bwrA)K293 because L (left) conformation "forbidden" or filtered. T0547 401 :DR 2bwrA 291 :NK T0547 404 :NAEIL 2bwrA 294 :VGDII Number of specific fragments extracted= 2 number of extra gaps= 2 total=99617 # 1f60A.400.297 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)A405 (1f60A)G303 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1f60A)D304 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :QDRSN 1f60A 298 :EQGVP T0547 407 :IL 1f60A 305 :NV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99619 # 1vqoL.400.98 read from T0547.t06.many.frag # found chain 1vqoL in template set Warning: unaligning (T0547)Q400 (1vqoL)E98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D401 (1vqoL)E99 because L (left) conformation "forbidden" or filtered. T0547 402 :RSNAEIL 1vqoL 100 :ADDADYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=99620 # 1wy6A.400.71 read from T0547.t06.many.frag # found chain 1wy6A in template set T0547 400 :QDRSNAEIL 1wy6A 73 :DKCQNLKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99621 # 1zeqX.400.55 read from T0547.t06.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)Q400 (1zeqX)S60 because Y (epsilon') conformation "forbidden" or filtered. T0547 401 :DRSNAEIL 1zeqX 61 :EIKTGDKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=99622 # 1zx8A.400.70 read from T0547.t06.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)E406 (1zx8A)D65 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :QDRSNA 1zx8A 59 :EVVEIG T0547 407 :IL 1zx8A 66 :VG Number of specific fragments extracted= 2 number of extra gaps= 1 total=99624 # 2cxhA.400.132 read from T0547.t06.many.frag # found chain 2cxhA in training set Warning: unaligning (T0547)N404 (2cxhA)G117 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (2cxhA)G118 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2cxhA)E119 because P (beta_P) conformation "forbidden" or filtered. T0547 400 :QDRS 2cxhA 113 :PSLR T0547 407 :IL 2cxhA 120 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99626 # 1b12A.400.47 read from T0547.t06.many.frag # found chain 1b12A in template set T0547 400 :QDRSNAEIL 1b12A 123 :GHPKRGDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99627 # 7odcA.401.373 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D401 (7odcA)E374 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (7odcA)V377 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (7odcA)G378 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RS 7odcA 375 :MH T0547 406 :EILT 7odcA 379 :DWML Number of specific fragments extracted= 2 number of extra gaps= 2 total=99629 # 2evrA.401.170 read from T0547.t06.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)N404 (2evrA)A162 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (2evrA)G163 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2evrA)D164 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :DRS 2evrA 159 :ELV T0547 407 :ILT 2evrA 165 :LVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=99631 # 1knwA.401.362 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A405 (1knwA)G367 because T (delta_L) conformation "forbidden" or filtered. T0547 401 :DRSN 1knwA 363 :EVKA T0547 406 :EILT 1knwA 368 :DYLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99633 # 2dpmA.401.183 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 401 :DRSNAEILT 2dpmA 184 :DVRTGDFVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99634 # 1jg1A.401.154 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)N404 (1jg1A)P158 because C (cis) conformation "forbidden" or filtered. T0547 401 :DRS 1jg1A 155 :PKA T0547 405 :AEILT 1jg1A 159 :YDVII Number of specific fragments extracted= 2 number of extra gaps= 1 total=99636 # 1i8dA.401.74 read from T0547.t06.many.frag # found chain 1i8dA in template set T0547 401 :DRSNAEILT 1i8dA 75 :DLKVGDWVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=99637 # 1at0.401.19 read from T0547.t06.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)A405 (1at0)G281 because T (delta_L) conformation "forbidden" or filtered. T0547 401 :DRSN 1at0 277 :ELSI T0547 406 :EILT 1at0 282 :DRVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99639 # 1efdN.401.198 read from T0547.t06.many.frag # found chain 1efdN in template set T0547 401 :DRSNAEILT 1efdN 229 :AYKDVDVLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=99640 # 1zupA.401.49 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 401 :DRSNAEILT 1zupA 38 :EGEILDQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=99641 # 2be1A.401.5 read from T0547.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)R402 (2be1A)L117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (2be1A)L119 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (2be1A)S120 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :D 2be1A 116 :E T0547 403 :S 2be1A 118 :S T0547 406 :EILT 2be1A 121 :DILI Number of specific fragments extracted= 3 number of extra gaps= 2 total=99644 # 1hqz1.401.74 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)R402 (1hqz1)S76 because Y (epsilon') conformation "forbidden" or filtered. T0547 401 :D 1hqz1 75 :G T0547 403 :SNAEILT 1hqz1 77 :DVEKIII Number of specific fragments extracted= 2 number of extra gaps= 1 total=99646 # 1wkcA.401.98 read from T0547.t06.many.frag # found chain 1wkcA in training set T0547 401 :DRSNAEILT 1wkcA 99 :DPRVLDLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99647 # 1gtkA.401.117 read from T0547.t06.many.frag # found chain 1gtkA in training set T0547 401 :DRSNAEILT 1gtkA 118 :ALPAGSIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99648 # 1txlA.401.153 read from T0547.t06.many.frag # found chain 1txlA in training set T0547 401 :DRSNAEILT 1txlA 154 :ESKAPKYIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=99649 # 1zx8A.401.71 read from T0547.t06.many.frag # found chain 1zx8A in template set T0547 401 :DRSNAEILT 1zx8A 60 :VVEIGDVGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99650 # 2bwrA.401.290 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)S403 (2bwrA)K293 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (2bwrA)V294 because E (beta_S) conformation "forbidden" or filtered. T0547 401 :DR 2bwrA 291 :NK T0547 405 :AEILT 2bwrA 295 :GDIIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=99652 # 1wmmA.401.33 read from T0547.t06.many.frag # found chain 1wmmA in template set T0547 401 :DRSNAEILT 1wmmA 34 :RVKPGDKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99653 # 1zkdA.401.144 read from T0547.t06.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)A405 (1zkdA)G149 because S (epsilon) conformation "forbidden" or filtered. T0547 401 :DRSN 1zkdA 145 :DVPE T0547 406 :EILT 1zkdA 150 :PAVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=99655 # 1b12A.401.48 read from T0547.t06.many.frag # found chain 1b12A in template set Warning: unaligning (T0547)N404 (1b12A)R127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1b12A)G128 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1b12A)D129 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :DRS 1b12A 124 :HPK T0547 407 :ILT 1b12A 130 :IVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99657 # 1kwgA.401.393 read from T0547.t06.many.frag # found chain 1kwgA in training set T0547 401 :DRSNAEILT 1kwgA 394 :PVAQAPVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99658 # 1y0zA.401.296 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)N404 (1y0zA)R300 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1y0zA)G301 because T (delta_L) conformation "forbidden" or filtered. T0547 401 :DRS 1y0zA 297 :PWQ T0547 406 :EILT 1y0zA 302 :DVLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99660 # 1ei6A.401.331 read from T0547.t06.many.frag # found chain 1ei6A in template set T0547 401 :DRSNAEILT 1ei6A 333 :EDRIGDLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99661 # 2b0aA.401.79 read from T0547.t06.many.frag # found chain 2b0aA in training set Warning: unaligning (T0547)D401 because of BadResidue code BAD_PEPTIDE at template residue (2b0aA)K80 T0547 402 :RSNAEILT 2b0aA 81 :LPACDILL Number of specific fragments extracted= 1 number of extra gaps= 1 total=99662 # 1vqoL.401.99 read from T0547.t06.many.frag # found chain 1vqoL in template set Warning: unaligning (T0547)D401 (1vqoL)E99 because L (left) conformation "forbidden" or filtered. T0547 402 :RSNAEILT 1vqoL 100 :ADDADYVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=99663 # 1rlr.401.473 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 401 :DRSNAEILT 1rlr 474 :NLDELDELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99664 # 1d4oA.401.93 read from T0547.t06.many.frag # found chain 1d4oA in training set T0547 401 :DRSNAEILT 1d4oA 94 :DFPDTDLVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99665 # 1gwyA.401.78 read from T0547.t06.many.frag # found chain 1gwyA in training set Warning: unaligning (T0547)D401 (1gwyA)P79 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1gwyA)T82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L408 (1gwyA)A86 because Y (epsilon') conformation "forbidden" or filtered. T0547 402 :RS 1gwyA 80 :VA T0547 405 :AEI 1gwyA 83 :GAV T0547 409 :T 1gwyA 87 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=99668 # 1mg4A.401.80 read from T0547.t06.many.frag # found chain 1mg4A in training set T0547 401 :DRSNAEILT 1mg4A 122 :QLVEGESYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99669 # 1i4wA.401.173 read from T0547.t06.many.frag # found chain 1i4wA in template set T0547 401 :DRSNAEILT 1i4wA 162 :RFGKVKMLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99670 # 1p99A.401.132 read from T0547.t06.many.frag # found chain 1p99A in template set Warning: unaligning (T0547)A405 (1p99A)G137 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1p99A)A138 because P (beta_P) conformation "forbidden" or filtered. T0547 401 :DRSN 1p99A 133 :KVKD T0547 407 :ILT 1p99A 139 :KVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99672 # 1knwA.402.363 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E406 (1knwA)D368 because P (beta_P) conformation "forbidden" or filtered. T0547 402 :RSNA 1knwA 364 :VKAG T0547 407 :ILTH 1knwA 369 :YLVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99674 # 7odcA.402.374 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A405 (7odcA)G378 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSN 7odcA 375 :MHV T0547 406 :EILTH 7odcA 379 :DWMLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=99676 # 2dpmA.402.184 read from T0547.t06.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)A405 (2dpmA)G188 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (2dpmA)D189 because P (beta_P) conformation "forbidden" or filtered. T0547 402 :RSN 2dpmA 185 :VRT T0547 407 :ILTH 2dpmA 190 :FVYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=99678 # 2evrA.402.171 read from T0547.t06.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)A405 (2evrA)G163 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSN 2evrA 160 :LVA T0547 406 :EILTH 2evrA 164 :DLVFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=99680 # 1i8dA.402.75 read from T0547.t06.many.frag # found chain 1i8dA in template set T0547 402 :RSNAEILTH 1i8dA 76 :LKVGDWVNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99681 # 1at0.402.20 read from T0547.t06.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)A405 (1at0)G281 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSN 1at0 278 :LSI T0547 406 :EILTH 1at0 282 :DRVLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=99683 # 1jg1A.402.155 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)N404 (1jg1A)P158 because C (cis) conformation "forbidden" or filtered. T0547 402 :RS 1jg1A 156 :KA T0547 405 :AEILTH 1jg1A 159 :YDVIIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99685 # 1wmmA.402.34 read from T0547.t06.many.frag # found chain 1wmmA in template set T0547 402 :RSNAEILTH 1wmmA 35 :VKPGDKLVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=99686 # 1sv6A.402.221 read from T0547.t06.many.frag # found chain 1sv6A in template set Warning: unaligning (T0547)R402 (1sv6A)L222 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (1sv6A)T224 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1sv6A)G225 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :S 1sv6A 223 :R T0547 406 :EILTH 1sv6A 226 :DIILT Number of specific fragments extracted= 2 number of extra gaps= 2 total=99688 # 2be1A.402.6 read from T0547.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)R402 (2be1A)L117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A126 T0547 403 :SNAEILT 2be1A 118 :SLSDILI Number of specific fragments extracted= 1 number of extra gaps= 2 total=99689 # 1zupA.402.50 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 402 :RSNAEILTH 1zupA 39 :GEILDQIIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=99690 # 1efdN.402.199 read from T0547.t06.many.frag # found chain 1efdN in template set T0547 402 :RSNAEILTH 1efdN 230 :YKDVDVLCF Number of specific fragments extracted= 1 number of extra gaps= 0 total=99691 # 1wkcA.402.99 read from T0547.t06.many.frag # found chain 1wkcA in training set T0547 402 :RSNAEILTH 1wkcA 100 :PRVLDLVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99692 # 1b12A.402.49 read from T0547.t06.many.frag # found chain 1b12A in template set T0547 402 :RSNAEILTH 1b12A 125 :PKRGDIVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=99693 # 1zx8A.402.72 read from T0547.t06.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)H410 (1zx8A)W69 because D (zeta) conformation "forbidden" or filtered. T0547 402 :RSNAEILT 1zx8A 61 :VEIGDVGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=99694 # 1gtkA.402.118 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)H410 (1gtkA)T127 because Y (epsilon') conformation "forbidden" or filtered. T0547 402 :RSNAEILT 1gtkA 119 :LPAGSIVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=99695 # 1hqz1.402.75 read from T0547.t06.many.frag # found chain 1hqz1 in template set T0547 402 :RSNAEILTH 1hqz1 76 :SDVEKIIII Number of specific fragments extracted= 1 number of extra gaps= 0 total=99696 # 1txlA.402.154 read from T0547.t06.many.frag # found chain 1txlA in training set T0547 402 :RSNAEILTH 1txlA 155 :SKAPKYIQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=99697 # 1i4wA.402.174 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)R402 (1i4wA)F163 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S403 (1i4wA)G164 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1i4wA)K167 because P (beta_P) conformation "forbidden" or filtered. T0547 404 :NA 1i4wA 165 :KV T0547 407 :ILTH 1i4wA 168 :MLLW Number of specific fragments extracted= 2 number of extra gaps= 2 total=99699 # 1y93A.402.101 read from T0547.t06.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)R402 (1y93A)H206 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1y93A)G209 because S (epsilon) conformation "forbidden" or filtered. T0547 403 :SN 1y93A 207 :SG T0547 406 :EILTH 1y93A 210 :TNLFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=99701 # 2bwrA.402.291 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)S403 (2bwrA)K293 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (2bwrA)G295 because P (beta_P) conformation "forbidden" or filtered. T0547 402 :R 2bwrA 292 :K T0547 404 :N 2bwrA 294 :V T0547 406 :EILTH 2bwrA 296 :DIIGF Number of specific fragments extracted= 3 number of extra gaps= 2 total=99704 # 1zkdA.402.145 read from T0547.t06.many.frag # found chain 1zkdA in template set T0547 402 :RSNAEILTH 1zkdA 146 :VPEGPAVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99705 # 1olzA.402.203 read from T0547.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)S403 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1olzA)G205 Warning: unaligning (T0547)E406 (1olzA)D208 because P (beta_P) conformation "forbidden" or filtered. T0547 404 :NA 1olzA 206 :ED T0547 407 :ILTH 1olzA 209 :RVYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=99707 # 1mg4A.402.81 read from T0547.t06.many.frag # found chain 1mg4A in training set Warning: unaligning (T0547)A405 (1mg4A)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1mg4A)E127 because P (beta_P) conformation "forbidden" or filtered. T0547 402 :RSN 1mg4A 123 :LVE T0547 407 :ILTH 1mg4A 128 :SYVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=99709 # 1qxyA.402.83 read from T0547.t06.many.frag # found chain 1qxyA in training set Warning: unaligning (T0547)A405 (1qxyA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSN 1qxyA 84 :IRE T0547 406 :EILTH 1qxyA 88 :DLVNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=99711 # 2b0aA.402.80 read from T0547.t06.many.frag # found chain 2b0aA in training set Warning: unaligning (T0547)A405 (2b0aA)C84 because Y (epsilon') conformation "forbidden" or filtered. T0547 402 :RSN 2b0aA 81 :LPA T0547 406 :EILTH 2b0aA 85 :DILLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=99713 # 1a4iA.402.205 read from T0547.t06.many.frag # found chain 1a4iA in training set T0547 402 :RSNAEILTH 1a4iA 206 :VNKGDILVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99714 # 1d4oA.402.94 read from T0547.t06.many.frag # found chain 1d4oA in training set T0547 402 :RSNAEILTH 1d4oA 95 :FPDTDLVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99715 # 1y0zA.402.297 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)A405 (1y0zA)G301 because T (delta_L) conformation "forbidden" or filtered. T0547 402 :RSN 1y0zA 298 :WQR T0547 406 :EILTH 1y0zA 302 :DVLLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=99717 # 1v8bA.402.309 read from T0547.t06.many.frag # found chain 1v8bA in template set Warning: unaligning (T0547)A405 (1v8bA)G313 because P (beta_P) conformation "forbidden" or filtered. T0547 402 :RSN 1v8bA 310 :VDK T0547 406 :EILTH 1v8bA 314 :DFFIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=99719 # 1knwA.403.364 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A405 (1knwA)G367 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SN 1knwA 365 :KA T0547 406 :EILTHL 1knwA 368 :DYLVLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=99721 # 7odcA.403.375 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A405 (7odcA)G378 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SN 7odcA 376 :HV T0547 406 :EILTHL 7odcA 379 :DWMLFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=99723 # 2evrA.403.172 read from T0547.t06.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)L411 (2evrA)G169 because Y (epsilon') conformation "forbidden" or filtered. T0547 403 :SNAEILTH 2evrA 161 :VAGDLVFF Number of specific fragments extracted= 1 number of extra gaps= 1 total=99724 # 2dpmA.403.185 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 403 :SNAEILTHL 2dpmA 186 :RTGDFVYFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99725 # 1i8dA.403.76 read from T0547.t06.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)N404 (1i8dA)V78 because P (beta_P) conformation "forbidden" or filtered. T0547 403 :S 1i8dA 77 :K T0547 405 :AEILTHL 1i8dA 79 :GDWVNVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=99727 # 2be1A.403.7 read from T0547.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A126 Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A126 T0547 403 :SNAEILT 2be1A 118 :SLSDILI Number of specific fragments extracted= 1 number of extra gaps= 1 total=99728 # 1sv6A.403.222 read from T0547.t06.many.frag # found chain 1sv6A in template set Warning: unaligning (T0547)N404 (1sv6A)T224 because P (beta_P) conformation "forbidden" or filtered. T0547 403 :S 1sv6A 223 :R T0547 405 :AEILTHL 1sv6A 225 :GDIILTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=99730 # 1d4oA.403.95 read from T0547.t06.many.frag # found chain 1d4oA in training set T0547 403 :SNAEILTHL 1d4oA 96 :PDTDLVLVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=99731 # 1wmmA.403.35 read from T0547.t06.many.frag # found chain 1wmmA in template set T0547 403 :SNAEILTHL 1wmmA 36 :KPGDKLVIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99732 # 1wkcA.403.100 read from T0547.t06.many.frag # found chain 1wkcA in training set T0547 403 :SNAEILTHL 1wkcA 101 :RVLDLVVVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99733 # 1olzA.403.204 read from T0547.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)S403 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1olzA)G205 Warning: unaligning (T0547)E406 (1olzA)D208 because P (beta_P) conformation "forbidden" or filtered. T0547 404 :NA 1olzA 206 :ED T0547 407 :ILTHL 1olzA 209 :RVYFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=99735 # 1jg1A.403.156 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)N404 (1jg1A)P158 because C (cis) conformation "forbidden" or filtered. T0547 403 :S 1jg1A 157 :A T0547 405 :AEILTHL 1jg1A 159 :YDVIIVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=99737 # 1zupA.403.51 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 403 :SNAEILTHL 1zupA 40 :EILDQIIFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99738 # 1y93A.403.102 read from T0547.t06.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)N404 (1y93A)G208 because P (beta_P) conformation "forbidden" or filtered. T0547 403 :S 1y93A 207 :S T0547 405 :AEILTHL 1y93A 209 :GTNLFLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=99740 # 1efdN.403.200 read from T0547.t06.many.frag # found chain 1efdN in template set T0547 403 :SNAEILTHL 1efdN 231 :KDVDVLCFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99741 # 1a4iA.403.206 read from T0547.t06.many.frag # found chain 1a4iA in training set T0547 403 :SNAEILTHL 1a4iA 207 :NKGDILVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99742 # 1at0.403.21 read from T0547.t06.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)A405 (1at0)G281 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SN 1at0 279 :SI T0547 406 :EILTHL 1at0 282 :DRVLSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=99744 # 1i4wA.403.175 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)S403 (1i4wA)G164 because S (epsilon) conformation "forbidden" or filtered. T0547 404 :NAEILTHL 1i4wA 165 :KVKMLLWM Number of specific fragments extracted= 1 number of extra gaps= 1 total=99745 # 1xfiA.403.309 read from T0547.t06.many.frag # found chain 1xfiA in training set T0547 403 :SNAEILTHL 1xfiA 310 :SDADLVIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=99746 # 1qxyA.403.84 read from T0547.t06.many.frag # found chain 1qxyA in training set T0547 403 :SNAEILTHL 1qxyA 85 :REGDLVNID Number of specific fragments extracted= 1 number of extra gaps= 0 total=99747 # 1b12A.403.50 read from T0547.t06.many.frag # found chain 1b12A in template set Warning: unaligning (T0547)A405 (1b12A)G128 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1b12A)D129 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H410 (1b12A)F133 because Y (epsilon') conformation "forbidden" or filtered. T0547 403 :SN 1b12A 126 :KR T0547 407 :ILT 1b12A 130 :IVV T0547 411 :L 1b12A 134 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=99750 # 1mg4A.403.82 read from T0547.t06.many.frag # found chain 1mg4A in training set Warning: unaligning (T0547)A405 (1mg4A)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)H410 (1mg4A)C131 because P (beta_P) conformation "forbidden" or filtered. T0547 403 :SN 1mg4A 124 :VE T0547 406 :EILT 1mg4A 127 :ESYV T0547 411 :L 1mg4A 132 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=99753 # 1xpkC.403.294 read from T0547.t06.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)A405 (1xpkC)G297 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :SN 1xpkC 295 :QA T0547 406 :EILTHL 1xpkC 298 :ETIGLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=99755 # 2b0aA.403.81 read from T0547.t06.many.frag # found chain 2b0aA in training set T0547 403 :SNAEILTHL 2b0aA 82 :PACDILLIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99756 # 1y0zA.403.298 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)N404 (1y0zA)R300 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1y0zA)G301 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :S 1y0zA 299 :Q T0547 406 :EILTHL 1y0zA 302 :DVLLID Number of specific fragments extracted= 2 number of extra gaps= 1 total=99758 # 1ds1A.403.264 read from T0547.t06.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)N404 (1ds1A)P266 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1ds1A)G267 because T (delta_L) conformation "forbidden" or filtered. T0547 403 :S 1ds1A 265 :E T0547 406 :EILTHL 1ds1A 268 :DLLIVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=99760 # 1chmA.403.239 read from T0547.t06.many.frag # found chain 1chmA in template set Warning: unaligning (T0547)S403 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)N241 Warning: unaligning (T0547)N404 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)G243 Warning: unaligning (T0547)A405 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)G243 T0547 406 :EILTHL 1chmA 244 :DILSLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=99761 # 1hqz1.403.76 read from T0547.t06.many.frag # found chain 1hqz1 in template set T0547 403 :SNAEILTHL 1hqz1 77 :DVEKIIIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99762 # 2bwrA.403.292 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)S403 (2bwrA)K293 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N404 (2bwrA)V294 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (2bwrA)G295 because P (beta_P) conformation "forbidden" or filtered. T0547 406 :EILTHL 2bwrA 296 :DIIGFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=99763 # 1rlr.403.475 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 403 :SNAEILTHL 1rlr 476 :DELDELAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99764 # 1knwA.404.365 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A405 (1knwA)G367 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :N 1knwA 366 :A T0547 406 :EILTHLI 1knwA 368 :DYLVLHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=99766 # 7odcA.404.376 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I412 (7odcA)N385 because L (left) conformation "forbidden" or filtered. T0547 404 :NAEILTHL 7odcA 377 :VGDWMLFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=99767 # 1i4wA.404.176 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)A405 (1i4wA)V166 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1i4wA)K167 because P (beta_P) conformation "forbidden" or filtered. T0547 404 :N 1i4wA 165 :K T0547 407 :ILTHLI 1i4wA 168 :MLLWMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=99769 # 2be1A.404.8 read from T0547.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)A405 (2be1A)S120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A126 Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A126 T0547 404 :N 2be1A 119 :L T0547 406 :EILT 2be1A 121 :DILI T0547 412 :I 2be1A 127 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=99772 # 1y93A.404.103 read from T0547.t06.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)A405 (1y93A)G209 because S (epsilon) conformation "forbidden" or filtered. T0547 404 :N 1y93A 208 :G T0547 406 :EILTHLI 1y93A 210 :TNLFLTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=99774 # 1i8dA.404.77 read from T0547.t06.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)N404 (1i8dA)V78 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1i8dA)G79 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E406 (1i8dA)D80 because P (beta_P) conformation "forbidden" or filtered. T0547 407 :ILTHLI 1i8dA 81 :WVNVER Number of specific fragments extracted= 1 number of extra gaps= 1 total=99775 # 1rlr.404.476 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 404 :NAEILTHLI 1rlr 477 :ELDELAILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99776 # 1wkcA.404.101 read from T0547.t06.many.frag # found chain 1wkcA in training set Warning: unaligning (T0547)I412 (1wkcA)G110 because Y (epsilon') conformation "forbidden" or filtered. T0547 404 :NAEILTHL 1wkcA 102 :VLDLVVVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=99777 # 1sv6A.404.223 read from T0547.t06.many.frag # found chain 1sv6A in template set T0547 404 :NAEILTHLI 1sv6A 224 :TGDIILTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99778 # 2evrA.404.173 read from T0547.t06.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)A405 (2evrA)G163 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L411 (2evrA)G169 because Y (epsilon') conformation "forbidden" or filtered. T0547 404 :N 2evrA 162 :A T0547 406 :EILTH 2evrA 164 :DLVFF T0547 412 :I 2evrA 170 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=99781 # 1wmmA.404.36 read from T0547.t06.many.frag # found chain 1wmmA in template set T0547 404 :NAEILTHLI 1wmmA 37 :PGDKLVIYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99782 # 1zupA.404.52 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 404 :NAEILTHLI 1zupA 41 :ILDQIIFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99783 # 1olzA.404.205 read from T0547.t06.many.frag # found chain 1olzA in template set T0547 404 :NAEILTHLI 1olzA 206 :EDDRVYFFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=99784 # 1d4oA.404.96 read from T0547.t06.many.frag # found chain 1d4oA in training set Warning: unaligning (T0547)I412 (1d4oA)G105 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :NAEILTHL 1d4oA 97 :DTDLVLVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=99785 # 1jg1A.404.157 read from T0547.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0547)N404 (1jg1A)P158 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A405 (1jg1A)Y159 because E (beta_S) conformation "forbidden" or filtered. T0547 406 :EILTHLI 1jg1A 160 :DVIIVTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=99786 # 1xpkC.404.295 read from T0547.t06.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)E406 (1xpkC)E298 because P (beta_P) conformation "forbidden" or filtered. T0547 404 :NA 1xpkC 296 :AG T0547 407 :ILTHLI 1xpkC 299 :TIGLFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=99788 # 1xfiA.404.310 read from T0547.t06.many.frag # found chain 1xfiA in training set Warning: unaligning (T0547)N404 (1xfiA)D311 because G (3-10) conformation "forbidden" or filtered. T0547 405 :AEILTHLI 1xfiA 312 :ADLVIVEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=99789 # 1efdN.404.201 read from T0547.t06.many.frag # found chain 1efdN in template set T0547 404 :NAEILTHLI 1efdN 232 :DVDVLCFDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=99790 # 2dpmA.404.186 read from T0547.t06.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)A405 (2dpmA)G188 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :N 2dpmA 187 :T T0547 406 :EILTHLI 2dpmA 189 :DFVYFDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=99792 # 1kwgA.404.396 read from T0547.t06.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)H410 (1kwgA)V403 because P (beta_P) conformation "forbidden" or filtered. T0547 404 :NAEILT 1kwgA 397 :QAPVAL T0547 411 :LI 1kwgA 404 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=99794 # 2b0aA.404.82 read from T0547.t06.many.frag # found chain 2b0aA in training set Warning: unaligning (T0547)A405 (2b0aA)C84 because Y (epsilon') conformation "forbidden" or filtered. T0547 404 :N 2b0aA 83 :A T0547 406 :EILTHLI 2b0aA 85 :DILLIYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=99796 # 1a4iA.404.207 read from T0547.t06.many.frag # found chain 1a4iA in training set T0547 404 :NAEILTHLI 1a4iA 208 :KGDILVVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=99797 # 1ds1A.404.265 read from T0547.t06.many.frag # found chain 1ds1A in training set T0547 404 :NAEILTHLI 1ds1A 266 :PGDLLIVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=99798 # 1xrjA.404.127 read from T0547.t06.many.frag # found chain 1xrjA in template set T0547 404 :NAEILTHLI 1xrjA 128 :PADVVLFEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99799 # 1y0zA.404.299 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)A405 (1y0zA)G301 because T (delta_L) conformation "forbidden" or filtered. T0547 404 :N 1y0zA 300 :R T0547 406 :EILTHLI 1y0zA 302 :DVLLIDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=99801 # 1b12A.404.51 read from T0547.t06.many.frag # found chain 1b12A in template set T0547 404 :NAEILTHLI 1b12A 127 :RGDIVVFKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99802 # 1svsA.404.259 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 404 :NAEILTHLI 1svsA 261 :DTSIILFLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=99803 # 2b5nA.404.34 read from T0547.t06.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)N404 (2b5nA)T421 because P (beta_P) conformation "forbidden" or filtered. T0547 405 :AEILTHLI 2b5nA 422 :YDTLVLSF Number of specific fragments extracted= 1 number of extra gaps= 1 total=99804 # 2bwrA.404.293 read from T0547.t06.many.frag # found chain 2bwrA in training set T0547 404 :NAEILTHLI 2bwrA 294 :VGDIIGFGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99805 # 1izoA.404.363 read from T0547.t06.many.frag # found chain 1izoA in template set Warning: unaligning (T0547)A405 (1izoA)G365 because G (3-10) conformation "forbidden" or filtered. T0547 404 :N 1izoA 364 :P T0547 406 :EILTHLI 1izoA 366 :EGITIEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99807 # 1knwA.405.366 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A405 (1knwA)G367 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)I412 (1knwA)D374 because L (left) conformation "forbidden" or filtered. T0547 406 :EILTHL 1knwA 368 :DYLVLH T0547 413 :T 1knwA 375 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=99809 # 7odcA.405.377 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A405 (7odcA)G378 because T (delta_L) conformation "forbidden" or filtered. T0547 406 :EILTHLIT 7odcA 379 :DWMLFENM Number of specific fragments extracted= 1 number of extra gaps= 1 total=99810 # 1i4wA.405.177 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)E406 (1i4wA)K167 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L411 (1i4wA)M172 because Y (epsilon') conformation "forbidden" or filtered. T0547 405 :A 1i4wA 166 :V T0547 407 :ILTH 1i4wA 168 :MLLW T0547 412 :IT 1i4wA 173 :PS Number of specific fragments extracted= 3 number of extra gaps= 2 total=99813 # 1y93A.405.104 read from T0547.t06.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)A405 (1y93A)G209 because S (epsilon) conformation "forbidden" or filtered. T0547 406 :EILTHLIT 1y93A 210 :TNLFLTAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=99814 # 1sv6A.405.224 read from T0547.t06.many.frag # found chain 1sv6A in template set Warning: unaligning (T0547)A405 (1sv6A)G225 because T (delta_L) conformation "forbidden" or filtered. T0547 406 :EILTHLIT 1sv6A 226 :DIILTGAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=99815 # 2be1A.405.9 read from T0547.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A126 Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A126 T0547 405 :AEILT 2be1A 120 :SDILI T0547 412 :IT 2be1A 127 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99817 # 1rlr.405.477 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 405 :AEILTHLIT 1rlr 478 :LDELAILAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99818 # 1svsA.405.260 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)E406 (1svsA)S263 because P (beta_P) conformation "forbidden" or filtered. T0547 405 :A 1svsA 262 :T T0547 407 :ILTHLIT 1svsA 264 :IILFLNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=99820 # 1xrjA.405.128 read from T0547.t06.many.frag # found chain 1xrjA in template set T0547 405 :AEILTHLIT 1xrjA 129 :ADVVLFEGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=99821 # 1ds1A.405.266 read from T0547.t06.many.frag # found chain 1ds1A in training set T0547 405 :AEILTHLIT 1ds1A 267 :GDLLIVDNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=99822 # 1wkcA.405.102 read from T0547.t06.many.frag # found chain 1wkcA in training set T0547 405 :AEILTHLIT 1wkcA 103 :LDLVVVPGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99823 # 1efdN.405.202 read from T0547.t06.many.frag # found chain 1efdN in template set Warning: unaligning (T0547)T413 (1efdN)D241 because L (left) conformation "forbidden" or filtered. T0547 405 :AEILTHLI 1efdN 233 :VDVLCFDH Number of specific fragments extracted= 1 number of extra gaps= 1 total=99824 # 1y0zA.405.300 read from T0547.t06.many.frag # found chain 1y0zA in template set T0547 405 :AEILTHLIT 1y0zA 301 :GDVLLIDNW Number of specific fragments extracted= 1 number of extra gaps= 0 total=99825 # 1wmmA.405.37 read from T0547.t06.many.frag # found chain 1wmmA in template set Warning: unaligning (T0547)E406 (1wmmA)D39 because P (beta_P) conformation "forbidden" or filtered. T0547 405 :A 1wmmA 38 :G T0547 407 :ILTHLIT 1wmmA 40 :KLVIYVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=99827 # 1jg1A.405.158 read from T0547.t06.many.frag # found chain 1jg1A in training set T0547 405 :AEILTHLIT 1jg1A 159 :YDVIIVTAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99828 # 1b12A.405.52 read from T0547.t06.many.frag # found chain 1b12A in template set Warning: unaligning (T0547)H410 (1b12A)F133 because Y (epsilon') conformation "forbidden" or filtered. T0547 405 :AEILT 1b12A 128 :GDIVV T0547 411 :LIT 1b12A 134 :KYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=99830 # 1d4oA.405.97 read from T0547.t06.many.frag # found chain 1d4oA in training set T0547 405 :AEILTHLIT 1d4oA 98 :TDLVLVIGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99831 # 1izoA.405.364 read from T0547.t06.many.frag # found chain 1izoA in template set T0547 405 :AEILTHLIT 1izoA 365 :GEGITIEVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=99832 # 1a4iA.405.208 read from T0547.t06.many.frag # found chain 1a4iA in training set Warning: unaligning (T0547)T413 (1a4iA)G217 because L (left) conformation "forbidden" or filtered. T0547 405 :AEILTHLI 1a4iA 209 :GDILVVAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=99833 # 1j0dA.405.315 read from T0547.t06.many.frag # found chain 1j0dA in template set T0547 405 :AEILTHLIT 1j0dA 316 :ANVLYVHLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99834 # 1xpkC.405.296 read from T0547.t06.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)A405 (1xpkC)G297 because T (delta_L) conformation "forbidden" or filtered. T0547 406 :EILTHLIT 1xpkC 298 :ETIGLFSY Number of specific fragments extracted= 1 number of extra gaps= 1 total=99835 # 1olzA.405.206 read from T0547.t06.many.frag # found chain 1olzA in template set T0547 405 :AEILTHLIT 1olzA 207 :DDRVYFFFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=99836 # 1xfiA.405.311 read from T0547.t06.many.frag # found chain 1xfiA in training set Warning: unaligning (T0547)A405 (1xfiA)A312 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I412 (1xfiA)G319 because S (epsilon) conformation "forbidden" or filtered. T0547 406 :EILTHL 1xfiA 313 :DLVIVE T0547 413 :T 1xfiA 320 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=99838 # 1kwgA.405.397 read from T0547.t06.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)A405 (1kwgA)A398 because P (beta_P) conformation "forbidden" or filtered. T0547 406 :EILTHLIT 1kwgA 399 :PVALVFDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=99839 # 2b5nA.405.35 read from T0547.t06.many.frag # found chain 2b5nA in template set T0547 405 :AEILTHLIT 2b5nA 422 :YDTLVLSFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99840 # 2bwrA.405.294 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)E406 (2bwrA)D296 because P (beta_P) conformation "forbidden" or filtered. T0547 405 :A 2bwrA 295 :G T0547 407 :ILTHLIT 2bwrA 297 :IIGFGDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=99842 # 1o2dA.405.218 read from T0547.t06.many.frag # found chain 1o2dA in training set T0547 405 :AEILTHLIT 1o2dA 207 :SDALAIEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=99843 # 2dpmA.405.187 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 405 :AEILTHLIT 2dpmA 188 :GDFVYFDPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99844 # 2evrA.405.174 read from T0547.t06.many.frag # found chain 2evrA in template set Warning: unaligning (T0547)L411 (2evrA)G169 because Y (epsilon') conformation "forbidden" or filtered. T0547 405 :AEILTH 2evrA 163 :GDLVFF T0547 412 :IT 2evrA 170 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=99846 # 1zupA.405.53 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 405 :AEILTHLIT 1zupA 42 :LDQIIFVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99847 # 1knwA.406.367 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E406 (1knwA)D368 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I412 (1knwA)D374 because L (left) conformation "forbidden" or filtered. T0547 407 :ILTHL 1knwA 369 :YLVLH T0547 413 :TK 1knwA 375 :TG Number of specific fragments extracted= 2 number of extra gaps= 2 total=99849 # 7odcA.406.378 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)E406 (7odcA)D379 because P (beta_P) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 7odcA 380 :WMLFENMG Number of specific fragments extracted= 1 number of extra gaps= 1 total=99850 # 1i4wA.406.178 read from T0547.t06.many.frag # found chain 1i4wA in template set T0547 406 :EILTHLITK 1i4wA 167 :KMLLWMPST Number of specific fragments extracted= 1 number of extra gaps= 0 total=99851 # 1y93A.406.105 read from T0547.t06.many.frag # found chain 1y93A in training set T0547 406 :EILTHLITK 1y93A 210 :TNLFLTAVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=99852 # 1sv6A.406.225 read from T0547.t06.many.frag # found chain 1sv6A in template set Warning: unaligning (T0547)K414 (1sv6A)G234 because Y (epsilon') conformation "forbidden" or filtered. T0547 406 :EILTHLIT 1sv6A 226 :DIILTGAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=99853 # 2be1A.406.10 read from T0547.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A126 Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A126 T0547 406 :EILT 2be1A 121 :DILI T0547 412 :ITK 2be1A 127 :DVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=99855 # 1svsA.406.261 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)T413 (1svsA)K270 because L (left) conformation "forbidden" or filtered. T0547 406 :EILTHLI 1svsA 263 :SIILFLN T0547 414 :K 1svsA 271 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=99857 # 1d4oA.406.98 read from T0547.t06.many.frag # found chain 1d4oA in training set T0547 406 :EILTHLITK 1d4oA 99 :DLVLVIGAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=99858 # 1rlr.406.478 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 406 :EILTHLITK 1rlr 479 :DELAILAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=99859 # 1xrjA.406.129 read from T0547.t06.many.frag # found chain 1xrjA in template set T0547 406 :EILTHLITK 1xrjA 130 :DVVLFEGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99860 # 1j0dA.406.316 read from T0547.t06.many.frag # found chain 1j0dA in template set T0547 406 :EILTHLITK 1j0dA 317 :NVLYVHLGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99861 # 1ds1A.406.267 read from T0547.t06.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)I412 (1ds1A)N274 because G (3-10) conformation "forbidden" or filtered. T0547 406 :EILTHL 1ds1A 268 :DLLIVD T0547 413 :TK 1ds1A 275 :FR Number of specific fragments extracted= 2 number of extra gaps= 1 total=99863 # 1b12A.406.53 read from T0547.t06.many.frag # found chain 1b12A in template set Warning: unaligning (T0547)E406 (1b12A)D129 because P (beta_P) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1b12A 130 :IVVFKYPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=99864 # 2bwrA.406.295 read from T0547.t06.many.frag # found chain 2bwrA in training set T0547 406 :EILTHLITK 2bwrA 296 :DIIGFGDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99865 # 1xfiA.406.312 read from T0547.t06.many.frag # found chain 1xfiA in training set Warning: unaligning (T0547)I412 (1xfiA)G319 because S (epsilon) conformation "forbidden" or filtered. T0547 406 :EILTHL 1xfiA 313 :DLVIVE T0547 413 :TK 1xfiA 320 :MG Number of specific fragments extracted= 2 number of extra gaps= 1 total=99867 # 1izoA.406.365 read from T0547.t06.many.frag # found chain 1izoA in template set T0547 406 :EILTHLITK 1izoA 366 :EGITIEVMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99868 # 1wkcA.406.103 read from T0547.t06.many.frag # found chain 1wkcA in training set Warning: unaligning (T0547)K414 (1wkcA)A112 because Y (epsilon') conformation "forbidden" or filtered. T0547 406 :EILTHLIT 1wkcA 104 :DLVVVPGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=99869 # 1y0zA.406.301 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)E406 (1y0zA)D302 because P (beta_P) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1y0zA 303 :VLLIDNWA Number of specific fragments extracted= 1 number of extra gaps= 1 total=99870 # 1efdN.406.203 read from T0547.t06.many.frag # found chain 1efdN in template set T0547 406 :EILTHLITK 1efdN 234 :DVLCFDHDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=99871 # 1c9kA.406.74 read from T0547.t06.many.frag # found chain 1c9kA in template set Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE in next template residue (1c9kA)C81 Warning: unaligning (T0547)I412 because of BadResidue code BAD_PEPTIDE at template residue (1c9kA)C81 T0547 406 :EILTH 1c9kA 75 :DAILL T0547 413 :TK 1c9kA 82 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=99873 # 1kwgA.406.398 read from T0547.t06.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)H410 (1kwgA)V403 because P (beta_P) conformation "forbidden" or filtered. T0547 406 :EILT 1kwgA 399 :PVAL T0547 411 :LITK 1kwgA 404 :FDYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=99875 # 1o2dA.406.219 read from T0547.t06.many.frag # found chain 1o2dA in training set T0547 406 :EILTHLITK 1o2dA 208 :DALAIEAMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99876 # 1vctA.406.174 read from T0547.t06.many.frag # found chain 1vctA in template set T0547 406 :EILTHLITK 1vctA 175 :DVLIGRGTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=99877 # 1rz2A.406.134 read from T0547.t06.many.frag # found chain 1rz2A in training set Warning: unaligning (T0547)H410 (1rz2A)G139 because Y (epsilon') conformation "forbidden" or filtered. T0547 406 :EILT 1rz2A 135 :TILY T0547 411 :LITK 1rz2A 140 :HRMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=99879 # 1p99A.406.137 read from T0547.t06.many.frag # found chain 1p99A in template set Warning: unaligning (T0547)I412 (1p99A)N144 because G (3-10) conformation "forbidden" or filtered. T0547 406 :EILTHL 1p99A 138 :AKVVIP T0547 413 :TK 1p99A 145 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=99881 # 2b5nA.406.36 read from T0547.t06.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)K414 (2b5nA)G431 because T (delta_L) conformation "forbidden" or filtered. T0547 406 :EILTHLIT 2b5nA 423 :DTLVLSFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=99882 # 1zupA.406.54 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 406 :EILTHLITK 1zupA 43 :DQIIFVDGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=99883 # 1zx8A.406.76 read from T0547.t06.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)H410 (1zx8A)W69 because D (zeta) conformation "forbidden" or filtered. T0547 406 :EILT 1zx8A 65 :DVGY T0547 411 :LITK 1zx8A 70 :PPGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=99885 # 1a4iA.406.209 read from T0547.t06.many.frag # found chain 1a4iA in training set T0547 406 :EILTHLITK 1a4iA 210 :DILVVATGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=99886 # 1lnsA.406.458 read from T0547.t06.many.frag # found chain 1lnsA in template set T0547 406 :EILTHLITK 1lnsA 459 :DVLIVHGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=99887 # 1knwA.407.368 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I412 (1knwA)D374 because L (left) conformation "forbidden" or filtered. T0547 407 :ILTHL 1knwA 369 :YLVLH T0547 413 :TKK 1knwA 375 :TGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=99889 # 7odcA.407.379 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I412 (7odcA)N385 because L (left) conformation "forbidden" or filtered. T0547 407 :ILTHL 7odcA 380 :WMLFE T0547 413 :TKK 7odcA 386 :MGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=99891 # 1i4wA.407.179 read from T0547.t06.many.frag # found chain 1i4wA in template set T0547 407 :ILTHLITKK 1i4wA 168 :MLLWMPSTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=99892 # 1y93A.407.106 read from T0547.t06.many.frag # found chain 1y93A in training set T0547 407 :ILTHLITKK 1y93A 211 :NLFLTAVHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=99893 # 1svsA.407.262 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 407 :ILTHLITKK 1svsA 264 :IILFLNKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99894 # 1j0dA.407.317 read from T0547.t06.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)I412 (1j0dA)L323 because G (3-10) conformation "forbidden" or filtered. T0547 407 :ILTHL 1j0dA 318 :VLYVH T0547 413 :TKK 1j0dA 324 :GGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=99896 # 1rlr.407.479 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 407 :ILTHLITKK 1rlr 480 :ELAILAVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99897 # 1d4oA.407.99 read from T0547.t06.many.frag # found chain 1d4oA in training set T0547 407 :ILTHLITKK 1d4oA 100 :LVLVIGAND Number of specific fragments extracted= 1 number of extra gaps= 0 total=99898 # 2be1A.407.11 read from T0547.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A126 Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A126 Warning: unaligning (T0547)K415 (2be1A)G130 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILT 2be1A 122 :ILI T0547 412 :ITK 2be1A 127 :DVE Number of specific fragments extracted= 2 number of extra gaps= 2 total=99900 # 1izoA.407.366 read from T0547.t06.many.frag # found chain 1izoA in template set T0547 407 :ILTHLITKK 1izoA 367 :GITIEVMKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99901 # 1xfiA.407.313 read from T0547.t06.many.frag # found chain 1xfiA in training set T0547 407 :ILTHLITKK 1xfiA 314 :LVIVEGMGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=99902 # 1s2oA.407.180 read from T0547.t06.many.frag # found chain 1s2oA in training set Warning: unaligning (T0547)L411 (1s2oA)G185 because Y (epsilon') conformation "forbidden" or filtered. T0547 407 :ILTH 1s2oA 181 :TLVC T0547 412 :ITKK 1s2oA 186 :DSGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=99904 # 1sv6A.407.226 read from T0547.t06.many.frag # found chain 1sv6A in template set Warning: unaligning (T0547)H410 (1sv6A)T230 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (1sv6A)G234 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1sv6A)P235 because P (beta_P) conformation "forbidden" or filtered. T0547 407 :ILT 1sv6A 227 :IIL T0547 411 :LIT 1sv6A 231 :GAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=99906 # 2bwrA.407.296 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)K414 (2bwrA)G304 because Y (epsilon') conformation "forbidden" or filtered. T0547 407 :ILTHLIT 2bwrA 297 :IIGFGDA T0547 415 :K 2bwrA 305 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=99908 # 1c9kA.407.75 read from T0547.t06.many.frag # found chain 1c9kA in template set Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE in next template residue (1c9kA)C81 Warning: unaligning (T0547)I412 because of BadResidue code BAD_PEPTIDE at template residue (1c9kA)C81 T0547 407 :ILTH 1c9kA 76 :AILL T0547 413 :TKK 1c9kA 82 :ITT Number of specific fragments extracted= 2 number of extra gaps= 1 total=99910 # 1kwgA.407.399 read from T0547.t06.many.frag # found chain 1kwgA in training set T0547 407 :ILTHLITKK 1kwgA 400 :VALVFDYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99911 # 1xrjA.407.130 read from T0547.t06.many.frag # found chain 1xrjA in template set Warning: unaligning (T0547)K414 (1xrjA)L138 because G (3-10) conformation "forbidden" or filtered. T0547 407 :ILTHLIT 1xrjA 131 :VVLFEGI T0547 415 :K 1xrjA 139 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=99913 # 1zx8A.407.77 read from T0547.t06.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)H410 (1zx8A)W69 because D (zeta) conformation "forbidden" or filtered. T0547 407 :ILT 1zx8A 66 :VGY T0547 411 :LITKK 1zx8A 70 :PPGKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=99915 # 1o2dA.407.220 read from T0547.t06.many.frag # found chain 1o2dA in training set T0547 407 :ILTHLITKK 1o2dA 209 :ALAIEAMKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=99916 # 1b12A.407.54 read from T0547.t06.many.frag # found chain 1b12A in template set Warning: unaligning (T0547)H410 (1b12A)F133 because Y (epsilon') conformation "forbidden" or filtered. T0547 407 :ILT 1b12A 130 :IVV T0547 411 :LITKK 1b12A 134 :KYPED Number of specific fragments extracted= 2 number of extra gaps= 1 total=99918 # 1jlyA.407.111 read from T0547.t06.many.frag # found chain 1jlyA in template set Warning: unaligning (T0547)H410 (1jlyA)H114 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (1jlyA)G118 because L (left) conformation "forbidden" or filtered. T0547 407 :ILT 1jlyA 111 :RLL T0547 411 :LIT 1jlyA 115 :VQL T0547 415 :K 1jlyA 119 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=99921 # 1vctA.407.175 read from T0547.t06.many.frag # found chain 1vctA in template set T0547 407 :ILTHLITKK 1vctA 176 :VLIGRGTRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=99922 # 1gwmA.407.111 read from T0547.t06.many.frag # found chain 1gwmA in training set Warning: unaligning (T0547)K415 (1gwmA)G120 because L (left) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1gwmA 112 :RIDFQDAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=99923 # 1ds1A.407.268 read from T0547.t06.many.frag # found chain 1ds1A in training set T0547 407 :ILTHLITKK 1ds1A 269 :LLIVDNFRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=99924 # 1w5qA.407.279 read from T0547.t06.many.frag # found chain 1w5qA in training set T0547 407 :ILTHLITKK 1w5qA 280 :TFVYQVSGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=99925 # 1y0zA.407.302 read from T0547.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0547)K415 (1y0zA)V311 because E (beta_S) conformation "forbidden" or filtered. T0547 407 :ILTHLITK 1y0zA 303 :VLLIDNWA Number of specific fragments extracted= 1 number of extra gaps= 1 total=99926 # 1mml.407.135 read from T0547.t06.many.frag # found chain 1mml in training set Warning: unaligning (T0547)K414 (1mml)K152 because P (beta_P) conformation "forbidden" or filtered. T0547 407 :ILTHLIT 1mml 145 :WYTVLDL T0547 415 :K 1mml 153 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=99928 # 1cnv.407.260 read from T0547.t06.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)I407 (1cnv)G261 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE in next template residue (1cnv)N266 Warning: unaligning (T0547)I412 because of BadResidue code BAD_PEPTIDE at template residue (1cnv)N266 T0547 408 :LTH 1cnv 262 :IAL T0547 413 :TKK 1cnv 267 :RQA Number of specific fragments extracted= 2 number of extra gaps= 2 total=99930 # 2b5nA.407.37 read from T0547.t06.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)K414 (2b5nA)G431 because T (delta_L) conformation "forbidden" or filtered. T0547 407 :ILTHLIT 2b5nA 424 :TLVLSFV T0547 415 :K 2b5nA 432 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=99932 # 1t3gA.407.69 read from T0547.t06.many.frag # found chain 1t3gA in template set T0547 407 :ILTHLITKK 1t3gA 472 :RLIIVMTPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=99933 # 1knwA.408.369 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I412 (1knwA)D374 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K415 (1knwA)A377 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. T0547 408 :LTHL 1knwA 370 :LVLH T0547 413 :TK 1knwA 375 :TG Number of specific fragments extracted= 2 number of extra gaps= 2 total=99935 # 7odcA.408.380 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A416 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. T0547 408 :LTHLITKK 7odcA 381 :MLFENMGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=99936 # 1i4wA.408.180 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)L411 (1i4wA)M172 because Y (epsilon') conformation "forbidden" or filtered. T0547 408 :LTH 1i4wA 169 :LLW T0547 412 :ITKKA 1i4wA 173 :PSTTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=99938 # 1y93A.408.107 read from T0547.t06.many.frag # found chain 1y93A in training set T0547 408 :LTHLITKKA 1y93A 212 :LFLTAVHEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=99939 # 1svsA.408.263 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)T413 (1svsA)K270 because L (left) conformation "forbidden" or filtered. T0547 408 :LTHLI 1svsA 265 :ILFLN T0547 414 :KKA 1svsA 271 :KDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=99941 # 1rlr.408.480 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 408 :LTHLITKKA 1rlr 481 :LAILAVRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99942 # 1izoA.408.367 read from T0547.t06.many.frag # found chain 1izoA in template set T0547 408 :LTHLITKKA 1izoA 368 :ITIEVMKAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=99943 # 1j0dA.408.318 read from T0547.t06.many.frag # found chain 1j0dA in template set T0547 408 :LTHLITKKA 1j0dA 319 :LYVHLGGAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=99944 # 1kwgA.408.400 read from T0547.t06.many.frag # found chain 1kwgA in training set T0547 408 :LTHLITKKA 1kwgA 401 :ALVFDYEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99945 # 1c9kA.408.76 read from T0547.t06.many.frag # found chain 1c9kA in template set Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE in next template residue (1c9kA)C81 Warning: unaligning (T0547)I412 because of BadResidue code BAD_PEPTIDE at template residue (1c9kA)C81 T0547 408 :LTH 1c9kA 77 :ILL T0547 413 :TKKA 1c9kA 82 :ITTM Number of specific fragments extracted= 2 number of extra gaps= 1 total=99947 # 1f86A.408.60 read from T0547.t06.many.frag # found chain 1f86A in training set T0547 408 :LTHLITKKA 1f86A 70 :KVEIDTKSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99948 # 1o2dA.408.221 read from T0547.t06.many.frag # found chain 1o2dA in training set T0547 408 :LTHLITKKA 1o2dA 210 :LAIEAMKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=99949 # 1cnv.408.261 read from T0547.t06.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE in next template residue (1cnv)N266 Warning: unaligning (T0547)I412 because of BadResidue code BAD_PEPTIDE at template residue (1cnv)N266 T0547 408 :LTH 1cnv 262 :IAL T0547 413 :TKKA 1cnv 267 :RQAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=99951 # 1jlyA.408.112 read from T0547.t06.many.frag # found chain 1jlyA in template set Warning: unaligning (T0547)H410 (1jlyA)H114 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (1jlyA)G118 because L (left) conformation "forbidden" or filtered. T0547 408 :LT 1jlyA 112 :LL T0547 411 :LIT 1jlyA 115 :VQL T0547 415 :KA 1jlyA 119 :HY Number of specific fragments extracted= 3 number of extra gaps= 2 total=99954 # 1mml.408.136 read from T0547.t06.many.frag # found chain 1mml in training set T0547 408 :LTHLITKKA 1mml 146 :YTVLDLKDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=99955 # 1d4oA.408.100 read from T0547.t06.many.frag # found chain 1d4oA in training set Warning: unaligning (T0547)I412 (1d4oA)G105 because T (delta_L) conformation "forbidden" or filtered. T0547 408 :LTHL 1d4oA 101 :VLVI T0547 413 :TKKA 1d4oA 106 :ANDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=99957 # 1ug3A.408.245 read from T0547.t06.many.frag # found chain 1ug3A in template set T0547 408 :LTHLITKKA 1ug3A 1479 :LVRALMTAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99958 # 1xfiA.408.314 read from T0547.t06.many.frag # found chain 1xfiA in training set Warning: unaligning (T0547)I412 (1xfiA)G319 because S (epsilon) conformation "forbidden" or filtered. T0547 408 :LTHL 1xfiA 315 :VIVE T0547 413 :TKKA 1xfiA 320 :MGRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=99960 # 1t3gA.408.70 read from T0547.t06.many.frag # found chain 1t3gA in template set T0547 408 :LTHLITKKA 1t3gA 473 :LIIVMTPNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99961 # 2be1A.408.12 read from T0547.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)H410 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A126 Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A126 Warning: unaligning (T0547)K415 (2be1A)G130 because T (delta_L) conformation "forbidden" or filtered. T0547 408 :LT 2be1A 123 :LI T0547 412 :ITK 2be1A 127 :DVE T0547 416 :A 2be1A 131 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=99964 # 1odmA.408.247 read from T0547.t06.many.frag # found chain 1odmA in training set Warning: unaligning (T0547)H410 (1odmA)L250 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I412 (1odmA)N252 because Y (epsilon') conformation "forbidden" or filtered. T0547 408 :LT 1odmA 248 :GY T0547 411 :L 1odmA 251 :I T0547 413 :TKKA 1odmA 253 :CGSY Number of specific fragments extracted= 3 number of extra gaps= 2 total=99967 # 1xv5A.408.320 read from T0547.t06.many.frag # found chain 1xv5A in training set T0547 408 :LTHLITKKA 1xv5A 1320 :VFWKSTGEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=99968 # 1w5qA.408.280 read from T0547.t06.many.frag # found chain 1w5qA in training set T0547 408 :LTHLITKKA 1w5qA 281 :FVYQVSGEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99969 # 1a12A.408.288 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)L411 (1a12A)S300 because Y (epsilon') conformation "forbidden" or filtered. T0547 408 :LTH 1a12A 297 :VGF T0547 412 :ITKKA 1a12A 301 :GGQHH Number of specific fragments extracted= 2 number of extra gaps= 1 total=99971 # 1qazA.408.208 read from T0547.t06.many.frag # found chain 1qazA in training set T0547 408 :LTHLITKKA 1qazA 212 :LFRWGLGRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=99972 # 1s2oA.408.181 read from T0547.t06.many.frag # found chain 1s2oA in training set Warning: unaligning (T0547)L411 (1s2oA)G185 because Y (epsilon') conformation "forbidden" or filtered. T0547 408 :LTH 1s2oA 182 :LVC T0547 412 :ITKKA 1s2oA 186 :DSGND Number of specific fragments extracted= 2 number of extra gaps= 1 total=99974 # 1ekqA.408.198 read from T0547.t06.many.frag # found chain 1ekqA in training set Warning: unaligning (T0547)L408 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)L199 T0547 409 :THLITKKA 1ekqA 200 :LTSVVGAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=99975 # 1szqA.408.319 read from T0547.t06.many.frag # found chain 1szqA in template set Warning: unaligning (T0547)I412 (1szqA)T324 because Y (epsilon') conformation "forbidden" or filtered. T0547 408 :LTHL 1szqA 320 :VTIR T0547 413 :TKKA 1szqA 325 :HEAC Number of specific fragments extracted= 2 number of extra gaps= 1 total=99977 # 2bghA.408.247 read from T0547.t06.many.frag # found chain 2bghA in template set T0547 408 :LTHLITKKA 2bghA 248 :VVAYIWKHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=99978 # 1w6sA.408.486 read from T0547.t06.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)H410 (1w6sA)Y489 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 because of BadResidue code BAD_PEPTIDE in next template residue (1w6sA)L496 T0547 408 :LT 1w6sA 487 :VF T0547 411 :LITKK 1w6sA 490 :GTLDG Number of specific fragments extracted= 2 number of extra gaps= 2 total=99980 # 1knwA.409.370 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)T413 (1knwA)T375 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. T0547 409 :THLI 1knwA 371 :VLHD T0547 414 :KK 1knwA 376 :GA T0547 417 :I 1knwA 379 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=99983 # 7odcA.409.381 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I412 (7odcA)N385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. T0547 409 :THL 7odcA 382 :LFE T0547 413 :TKK 7odcA 386 :MGA T0547 417 :I 7odcA 390 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=99986 # 1y93A.409.108 read from T0547.t06.many.frag # found chain 1y93A in training set T0547 409 :THLITKKAI 1y93A 213 :FLTAVHEIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=99987 # 1i4wA.409.181 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)L411 (1i4wA)M172 because Y (epsilon') conformation "forbidden" or filtered. T0547 409 :TH 1i4wA 170 :LW T0547 412 :ITKKAI 1i4wA 173 :PSTTAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=99989 # 1rlr.409.481 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 409 :THLITKKAI 1rlr 482 :AILAVRALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=99990 # 1odmA.409.248 read from T0547.t06.many.frag # found chain 1odmA in training set Warning: unaligning (T0547)H410 (1odmA)L250 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (1odmA)G254 because P (beta_P) conformation "forbidden" or filtered. T0547 409 :T 1odmA 249 :Y T0547 411 :LIT 1odmA 251 :INC T0547 415 :KAI 1odmA 255 :SYM Number of specific fragments extracted= 3 number of extra gaps= 2 total=99993 # 1izoA.409.368 read from T0547.t06.many.frag # found chain 1izoA in template set T0547 409 :THLITKKAI 1izoA 369 :TIEVMKASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=99994 # 1ug3A.409.246 read from T0547.t06.many.frag # found chain 1ug3A in template set T0547 409 :THLITKKAI 1ug3A 1480 :VRALMTAVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=99995 # 1f86A.409.61 read from T0547.t06.many.frag # found chain 1f86A in training set T0547 409 :THLITKKAI 1f86A 71 :VEIDTKSYW Number of specific fragments extracted= 1 number of extra gaps= 0 total=99996 # 1o2dA.409.222 read from T0547.t06.many.frag # found chain 1o2dA in training set T0547 409 :THLITKKAI 1o2dA 211 :AIEAMKIIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=99997 # 1mml.409.137 read from T0547.t06.many.frag # found chain 1mml in training set Warning: unaligning (T0547)K414 (1mml)K152 because P (beta_P) conformation "forbidden" or filtered. T0547 409 :THLIT 1mml 147 :TVLDL T0547 415 :KAI 1mml 153 :DAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=99999 # 1jlyA.409.113 read from T0547.t06.many.frag # found chain 1jlyA in template set Warning: unaligning (T0547)H410 (1jlyA)H114 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (1jlyA)G118 because L (left) conformation "forbidden" or filtered. T0547 409 :T 1jlyA 113 :L T0547 411 :LIT 1jlyA 115 :VQL T0547 415 :KAI 1jlyA 119 :HYT Number of specific fragments extracted= 3 number of extra gaps= 2 total=100002 # 1kwgA.409.401 read from T0547.t06.many.frag # found chain 1kwgA in training set T0547 409 :THLITKKAI 1kwgA 402 :LVFDYEAAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=100003 # 1qazA.409.209 read from T0547.t06.many.frag # found chain 1qazA in training set T0547 409 :THLITKKAI 1qazA 213 :FRWGLGRYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100004 # 1cnv.409.262 read from T0547.t06.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE in next template residue (1cnv)N266 Warning: unaligning (T0547)I412 because of BadResidue code BAD_PEPTIDE at template residue (1cnv)N266 T0547 409 :TH 1cnv 263 :AL T0547 413 :TKKAI 1cnv 267 :RQADK Number of specific fragments extracted= 2 number of extra gaps= 1 total=100006 # 1ekqA.409.199 read from T0547.t06.many.frag # found chain 1ekqA in training set T0547 409 :THLITKKAI 1ekqA 200 :LTSVVGAFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=100007 # 1w5qA.409.281 read from T0547.t06.many.frag # found chain 1w5qA in training set T0547 409 :THLITKKAI 1w5qA 282 :VYQVSGEYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100008 # 1v7wA.409.430 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 409 :THLITKKAI 1v7wA 431 :LIPTICKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100009 # 1svsA.409.264 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)T413 (1svsA)K270 because L (left) conformation "forbidden" or filtered. T0547 409 :THLI 1svsA 266 :LFLN T0547 414 :KKAI 1svsA 271 :KDLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=100011 # 1j0dA.409.319 read from T0547.t06.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)I412 (1j0dA)L323 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T413 (1j0dA)G324 because S (epsilon) conformation "forbidden" or filtered. T0547 409 :THL 1j0dA 320 :YVH T0547 414 :KKAI 1j0dA 325 :GAPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=100013 # 1szqA.409.320 read from T0547.t06.many.frag # found chain 1szqA in template set T0547 409 :THLITKKAI 1szqA 321 :TIRTHEACI Number of specific fragments extracted= 1 number of extra gaps= 0 total=100014 # 2d0oA.409.528 read from T0547.t06.many.frag # found chain 2d0oA in template set T0547 409 :THLITKKAI 2d0oA 529 :FVTNALRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100015 # 2bghA.409.248 read from T0547.t06.many.frag # found chain 2bghA in template set T0547 409 :THLITKKAI 2bghA 249 :VAYIWKHVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=100016 # 1jdhA.409.435 read from T0547.t06.many.frag # found chain 1jdhA in template set T0547 409 :THLITKKAI 1jdhA 570 :VEGCTGALH Number of specific fragments extracted= 1 number of extra gaps= 0 total=100017 # 1t3gA.409.71 read from T0547.t06.many.frag # found chain 1t3gA in template set T0547 409 :THLITKKAI 1t3gA 474 :IIVMTPNYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100018 # 1kicA.409.198 read from T0547.t06.many.frag # found chain 1kicA in training set T0547 409 :THLITKKAI 1kicA 187 :IYWDPASAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100019 # 1w5tA.409.312 read from T0547.t06.many.frag # found chain 1w5tA in template set T0547 409 :THLITKKAI 1w5tA 313 :ILRLIAEAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=100020 # 1vioA.409.111 read from T0547.t06.many.frag # found chain 1vioA in training set Warning: unaligning (T0547)L411 (1vioA)T112 because Y (epsilon') conformation "forbidden" or filtered. T0547 409 :TH 1vioA 110 :LL T0547 412 :ITKKAI 1vioA 113 :DDGQWS Number of specific fragments extracted= 2 number of extra gaps= 1 total=100022 # 1z53A.409.108 read from T0547.t06.many.frag # found chain 1z53A in template set T0547 409 :THLITKKAI 1z53A 109 :SLGGVTAVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=100023 # 1a12A.409.289 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)L411 (1a12A)S300 because Y (epsilon') conformation "forbidden" or filtered. T0547 409 :TH 1a12A 298 :GF T0547 412 :ITKKAI 1a12A 301 :GGQHHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=100025 # 1knwA.410.371 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)T413 (1knwA)T375 because G (3-10) conformation "forbidden" or filtered. T0547 410 :HLI 1knwA 372 :LHD T0547 414 :KKAIL 1knwA 376 :GAYGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=100027 # 7odcA.410.382 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A416 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. T0547 410 :HLITKK 7odcA 383 :FENMGA T0547 417 :IL 7odcA 390 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=100029 # 1y93A.410.109 read from T0547.t06.many.frag # found chain 1y93A in training set T0547 410 :HLITKKAIL 1y93A 214 :LTAVHEIGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=100030 # 1odmA.410.249 read from T0547.t06.many.frag # found chain 1odmA in training set T0547 410 :HLITKKAIL 1odmA 250 :LINCGSYMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100031 # 1rlr.410.482 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 410 :HLITKKAIL 1rlr 483 :ILAVRALDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100032 # 1ug3A.410.247 read from T0547.t06.many.frag # found chain 1ug3A in template set T0547 410 :HLITKKAIL 1ug3A 1481 :RALMTAVCY Number of specific fragments extracted= 1 number of extra gaps= 0 total=100033 # 1jlyA.410.114 read from T0547.t06.many.frag # found chain 1jlyA in template set Warning: unaligning (T0547)H410 (1jlyA)H114 because P (beta_P) conformation "forbidden" or filtered. T0547 411 :LITKKAIL 1jlyA 115 :VQLGHYTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=100034 # 1f86A.410.62 read from T0547.t06.many.frag # found chain 1f86A in training set T0547 410 :HLITKKAIL 1f86A 72 :EIDTKSYWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100035 # 1o2dA.410.223 read from T0547.t06.many.frag # found chain 1o2dA in training set T0547 410 :HLITKKAIL 1o2dA 212 :IEAMKIIHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=100036 # 1qazA.410.210 read from T0547.t06.many.frag # found chain 1qazA in training set T0547 410 :HLITKKAIL 1qazA 214 :RWGLGRYVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=100037 # 1izoA.410.369 read from T0547.t06.many.frag # found chain 1izoA in template set T0547 410 :HLITKKAIL 1izoA 370 :IEVMKASLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=100038 # 1i4wA.410.182 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)L411 (1i4wA)M172 because Y (epsilon') conformation "forbidden" or filtered. T0547 410 :H 1i4wA 171 :W T0547 412 :ITKKAIL 1i4wA 173 :PSTTARK Number of specific fragments extracted= 2 number of extra gaps= 1 total=100040 # 1mml.410.138 read from T0547.t06.many.frag # found chain 1mml in training set Warning: unaligning (T0547)K415 (1mml)D153 because L (left) conformation "forbidden" or filtered. T0547 410 :HLITK 1mml 148 :VLDLK T0547 416 :AIL 1mml 154 :AFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=100042 # 1ekqA.410.200 read from T0547.t06.many.frag # found chain 1ekqA in training set T0547 410 :HLITKKAIL 1ekqA 201 :TSVVGAFCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100043 # 1ak0.410.86 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 410 :HLITKKAIL 1ak0 87 :ISAIANYTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=100044 # 1v7wA.410.431 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 410 :HLITKKAIL 1v7wA 432 :IPTICKYVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=100045 # 1a12A.410.290 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)L411 (1a12A)S300 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1a12A)H305 because E (beta_S) conformation "forbidden" or filtered. T0547 410 :H 1a12A 299 :F T0547 412 :ITKK 1a12A 301 :GGQH T0547 417 :IL 1a12A 306 :TV Number of specific fragments extracted= 3 number of extra gaps= 2 total=100048 # 1szqA.410.321 read from T0547.t06.many.frag # found chain 1szqA in template set Warning: unaligning (T0547)I412 (1szqA)T324 because Y (epsilon') conformation "forbidden" or filtered. T0547 410 :HL 1szqA 322 :IR T0547 413 :TKKAIL 1szqA 325 :HEACIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=100050 # 1w5qA.410.282 read from T0547.t06.many.frag # found chain 1w5qA in training set T0547 410 :HLITKKAIL 1w5qA 283 :YQVSGEYAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=100051 # 1kwgA.410.402 read from T0547.t06.many.frag # found chain 1kwgA in training set Warning: unaligning (T0547)H410 (1kwgA)V403 because P (beta_P) conformation "forbidden" or filtered. T0547 411 :LITKKAIL 1kwgA 404 :FDYEAAWI Number of specific fragments extracted= 1 number of extra gaps= 1 total=100052 # 1pjr.410.391 read from T0547.t06.many.frag # found chain 1pjr in template set T0547 410 :HLITKKAIL 1pjr 392 :IKDILAYLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=100053 # 1z70X.410.138 read from T0547.t06.many.frag # found chain 1z70X in training set T0547 410 :HLITKKAIL 1z70X 1211 :WNDAVAYCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=100054 # 2d0oA.410.529 read from T0547.t06.many.frag # found chain 2d0oA in template set T0547 410 :HLITKKAIL 2d0oA 530 :VTNALRALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=100055 # 1jdhA.410.436 read from T0547.t06.many.frag # found chain 1jdhA in template set T0547 410 :HLITKKAIL 1jdhA 571 :EGCTGALHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=100056 # 1cnv.410.263 read from T0547.t06.many.frag # found chain 1cnv in training set Warning: unaligning (T0547)L411 because of BadResidue code BAD_PEPTIDE in next template residue (1cnv)N266 Warning: unaligning (T0547)I412 because of BadResidue code BAD_PEPTIDE at template residue (1cnv)N266 T0547 410 :H 1cnv 264 :L T0547 413 :TKKAIL 1cnv 267 :RQADKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100058 # 2bghA.410.249 read from T0547.t06.many.frag # found chain 2bghA in template set T0547 410 :HLITKKAIL 2bghA 250 :AYIWKHVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=100059 # 1kicA.410.199 read from T0547.t06.many.frag # found chain 1kicA in training set T0547 410 :HLITKKAIL 1kicA 188 :YWDPASAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=100060 # 1tl9A.410.163 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 410 :HLITKKAIL 1tl9A 189 :ALLEKAYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100061 # 1z53A.410.109 read from T0547.t06.many.frag # found chain 1z53A in template set T0547 410 :HLITKKAIL 1z53A 110 :LGGVTAVQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100062 # 1w5tA.410.313 read from T0547.t06.many.frag # found chain 1w5tA in template set T0547 410 :HLITKKAIL 1w5tA 314 :LRLIAEATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100063 # 1knwA.411.372 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A416 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. T0547 411 :LITKK 1knwA 373 :HDTGA T0547 417 :ILL 1knwA 379 :GAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=100065 # 7odcA.411.383 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I412 (7odcA)N385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. T0547 411 :L 7odcA 384 :E T0547 413 :TKK 7odcA 386 :MGA T0547 417 :ILL 7odcA 390 :TVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=100068 # 1y93A.411.110 read from T0547.t06.many.frag # found chain 1y93A in training set T0547 411 :LITKKAILL 1y93A 215 :TAVHEIGHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100069 # 1odmA.411.250 read from T0547.t06.many.frag # found chain 1odmA in training set Warning: unaligning (T0547)K414 (1odmA)G254 because P (beta_P) conformation "forbidden" or filtered. T0547 411 :LIT 1odmA 251 :INC T0547 415 :KAILL 1odmA 255 :SYMAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=100071 # 1jlyA.411.115 read from T0547.t06.many.frag # found chain 1jlyA in template set Warning: unaligning (T0547)K414 (1jlyA)G118 because L (left) conformation "forbidden" or filtered. T0547 411 :LIT 1jlyA 115 :VQL T0547 415 :KAILL 1jlyA 119 :HYTQN Number of specific fragments extracted= 2 number of extra gaps= 1 total=100073 # 1ug3A.411.248 read from T0547.t06.many.frag # found chain 1ug3A in template set T0547 411 :LITKKAILL 1ug3A 1482 :ALMTAVCYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100074 # 1ak0.411.87 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 411 :LITKKAILL 1ak0 88 :SAIANYTQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=100075 # 1rlr.411.483 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 411 :LITKKAILL 1rlr 484 :LAVRALDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100076 # 1qazA.411.211 read from T0547.t06.many.frag # found chain 1qazA in training set T0547 411 :LITKKAILL 1qazA 215 :WGLGRYVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100077 # 1ekqA.411.201 read from T0547.t06.many.frag # found chain 1ekqA in training set T0547 411 :LITKKAILL 1ekqA 202 :SVVGAFCAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100078 # 1f86A.411.63 read from T0547.t06.many.frag # found chain 1f86A in training set T0547 411 :LITKKAILL 1f86A 73 :IDTKSYWKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100079 # 1a12A.411.291 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)L411 (1a12A)S300 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1a12A)H305 because E (beta_S) conformation "forbidden" or filtered. T0547 412 :ITKK 1a12A 301 :GGQH T0547 417 :ILL 1a12A 306 :TVC Number of specific fragments extracted= 2 number of extra gaps= 2 total=100081 # 1o2dA.411.224 read from T0547.t06.many.frag # found chain 1o2dA in training set T0547 411 :LITKKAILL 1o2dA 213 :EAMKIIHRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=100082 # 1pjr.411.392 read from T0547.t06.many.frag # found chain 1pjr in template set T0547 411 :LITKKAILL 1pjr 393 :KDILAYLRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100083 # 1z70X.411.139 read from T0547.t06.many.frag # found chain 1z70X in training set T0547 411 :LITKKAILL 1z70X 1212 :NDAVAYCTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=100084 # 1v7wA.411.432 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 411 :LITKKAILL 1v7wA 433 :PTICKYVME Number of specific fragments extracted= 1 number of extra gaps= 0 total=100085 # 1mml.411.139 read from T0547.t06.many.frag # found chain 1mml in training set Warning: unaligning (T0547)K415 (1mml)D153 because L (left) conformation "forbidden" or filtered. T0547 411 :LITK 1mml 149 :LDLK T0547 416 :AILL 1mml 154 :AFFC Number of specific fragments extracted= 2 number of extra gaps= 1 total=100087 # 1w5qA.411.283 read from T0547.t06.many.frag # found chain 1w5qA in training set T0547 411 :LITKKAILL 1w5qA 284 :QVSGEYAMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=100088 # 1kuuA.411.91 read from T0547.t06.many.frag # found chain 1kuuA in template set T0547 411 :LITKKAILL 1kuuA 92 :DAIGLSLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100089 # 1tl9A.411.164 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 411 :LITKKAILL 1tl9A 190 :LLEKAYAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100090 # 1izoA.411.370 read from T0547.t06.many.frag # found chain 1izoA in template set T0547 411 :LITKKAILL 1izoA 371 :EVMKASLDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=100091 # 1szqA.411.322 read from T0547.t06.many.frag # found chain 1szqA in template set Warning: unaligning (T0547)I412 (1szqA)T324 because Y (epsilon') conformation "forbidden" or filtered. T0547 411 :L 1szqA 323 :R T0547 413 :TKKAILL 1szqA 325 :HEACIRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=100093 # 1z53A.411.110 read from T0547.t06.many.frag # found chain 1z53A in template set T0547 411 :LITKKAILL 1z53A 111 :GGVTAVQEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=100094 # 2d0oA.411.530 read from T0547.t06.many.frag # found chain 2d0oA in template set T0547 411 :LITKKAILL 2d0oA 531 :TNALRALRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=100095 # 1i4wA.411.183 read from T0547.t06.many.frag # found chain 1i4wA in template set T0547 411 :LITKKAILL 1i4wA 172 :MPSTTARKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100096 # 1jdhA.411.437 read from T0547.t06.many.frag # found chain 1jdhA in template set T0547 411 :LITKKAILL 1jdhA 572 :GCTGALHIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100097 # 1j0dA.411.321 read from T0547.t06.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)K414 (1j0dA)G325 because T (delta_L) conformation "forbidden" or filtered. T0547 411 :LIT 1j0dA 322 :HLG T0547 415 :KAILL 1j0dA 326 :APALS Number of specific fragments extracted= 2 number of extra gaps= 1 total=100099 # 1vioA.411.113 read from T0547.t06.many.frag # found chain 1vioA in training set T0547 411 :LITKKAILL 1vioA 112 :TDDGQWSHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=100100 # 1wurA.411.154 read from T0547.t06.many.frag # found chain 1wurA in template set T0547 411 :LITKKAILL 1wurA 155 :QIAEAIQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100101 # 1gw5A.411.347 read from T0547.t06.many.frag # found chain 1gw5A in template set T0547 411 :LITKKAILL 1gw5A 348 :LALESMCTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100102 # 1knwA.412.373 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)I412 (1knwA)D374 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. T0547 413 :TKK 1knwA 375 :TGA T0547 417 :ILLL 1knwA 379 :GASM Number of specific fragments extracted= 2 number of extra gaps= 2 total=100104 # 7odcA.412.384 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)I412 (7odcA)N385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A416 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. T0547 413 :TKK 7odcA 386 :MGA T0547 417 :ILLL 7odcA 390 :TVAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=100106 # 1y93A.412.111 read from T0547.t06.many.frag # found chain 1y93A in training set T0547 412 :ITKKAILLL 1y93A 216 :AVHEIGHSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100107 # 1odmA.412.251 read from T0547.t06.many.frag # found chain 1odmA in training set Warning: unaligning (T0547)I412 (1odmA)N252 because Y (epsilon') conformation "forbidden" or filtered. T0547 413 :TKKAILLL 1odmA 253 :CGSYMAHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=100108 # 1jlyA.412.116 read from T0547.t06.many.frag # found chain 1jlyA in template set T0547 412 :ITKKAILLL 1jlyA 116 :QLGHYTQNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=100109 # 1ak0.412.88 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 412 :ITKKAILLL 1ak0 89 :AIANYTQRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100110 # 1ug3A.412.249 read from T0547.t06.many.frag # found chain 1ug3A in template set T0547 412 :ITKKAILLL 1ug3A 1483 :LMTAVCYSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100111 # 1a12A.412.292 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)I412 (1a12A)G301 because Y (epsilon') conformation "forbidden" or filtered. T0547 413 :TKKAILLL 1a12A 302 :GQHHTVCM Number of specific fragments extracted= 1 number of extra gaps= 1 total=100112 # 1ekqA.412.202 read from T0547.t06.many.frag # found chain 1ekqA in training set T0547 412 :ITKKAILLL 1ekqA 203 :VVGAFCAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100113 # 1qazA.412.212 read from T0547.t06.many.frag # found chain 1qazA in training set T0547 412 :ITKKAILLL 1qazA 216 :GLGRYVQAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=100114 # 1rlr.412.484 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 412 :ITKKAILLL 1rlr 485 :AVRALDALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100115 # 1z70X.412.140 read from T0547.t06.many.frag # found chain 1z70X in training set T0547 412 :ITKKAILLL 1z70X 1213 :DAVAYCTWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100116 # 1kuuA.412.92 read from T0547.t06.many.frag # found chain 1kuuA in template set T0547 412 :ITKKAILLL 1kuuA 93 :AIGLSLLAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=100117 # 1f86A.412.64 read from T0547.t06.many.frag # found chain 1f86A in training set T0547 412 :ITKKAILLL 1f86A 74 :DTKSYWKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100118 # 1pjr.412.393 read from T0547.t06.many.frag # found chain 1pjr in template set T0547 412 :ITKKAILLL 1pjr 394 :DILAYLRVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=100119 # 1v7wA.412.433 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 412 :ITKKAILLL 1v7wA 434 :TICKYVMET Number of specific fragments extracted= 1 number of extra gaps= 0 total=100120 # 1tl9A.412.165 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 412 :ITKKAILLL 1tl9A 191 :LEKAYAKVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=100121 # 1j0dA.412.322 read from T0547.t06.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)T413 (1j0dA)G324 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K414 (1j0dA)G325 because T (delta_L) conformation "forbidden" or filtered. T0547 412 :I 1j0dA 323 :L T0547 415 :KAILLL 1j0dA 326 :APALSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=100123 # 1mml.412.140 read from T0547.t06.many.frag # found chain 1mml in training set T0547 412 :ITKKAILLL 1mml 150 :DLKDAFFCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100124 # 1zx8A.412.82 read from T0547.t06.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)K414 (1zx8A)K73 because L (left) conformation "forbidden" or filtered. T0547 412 :IT 1zx8A 71 :PG T0547 415 :KAILLL 1zx8A 74 :ALCLFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=100126 # 1w5qA.412.284 read from T0547.t06.many.frag # found chain 1w5qA in training set T0547 412 :ITKKAILLL 1w5qA 285 :VSGEYAMHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=100127 # 1o2dA.412.225 read from T0547.t06.many.frag # found chain 1o2dA in training set T0547 412 :ITKKAILLL 1o2dA 214 :AMKIIHRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100128 # 1wurA.412.155 read from T0547.t06.many.frag # found chain 1wurA in template set T0547 412 :ITKKAILLL 1wurA 156 :IAEAIQEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100129 # 1szqA.412.323 read from T0547.t06.many.frag # found chain 1szqA in template set T0547 412 :ITKKAILLL 1szqA 324 :THEACIRII Number of specific fragments extracted= 1 number of extra gaps= 0 total=100130 # 1z53A.412.111 read from T0547.t06.many.frag # found chain 1z53A in template set T0547 412 :ITKKAILLL 1z53A 112 :GVTAVQEMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=100131 # 1w6kA.412.484 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 412 :ITKKAILLL 1w6kA 485 :DAVAVLLNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=100132 # 1gw5A.412.348 read from T0547.t06.many.frag # found chain 1gw5A in template set T0547 412 :ITKKAILLL 1gw5A 349 :ALESMCTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100133 # 1vioA.412.114 read from T0547.t06.many.frag # found chain 1vioA in training set T0547 412 :ITKKAILLL 1vioA 113 :DDGQWSHRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=100134 # 1k5nA.412.166 read from T0547.t06.many.frag # found chain 1k5nA in training set T0547 412 :ITKKAILLL 1k5nA 167 :WLRRYLENG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100135 # 2d0oA.412.531 read from T0547.t06.many.frag # found chain 2d0oA in template set T0547 412 :ITKKAILLL 2d0oA 532 :NALRALRQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100136 # 1knwA.413.374 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A416 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. T0547 413 :TKK 1knwA 375 :TGA T0547 417 :ILLLG 1knwA 379 :GASMS Number of specific fragments extracted= 2 number of extra gaps= 1 total=100138 # 7odcA.413.385 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A416 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (7odcA)A394 because P (beta_P) conformation "forbidden" or filtered. T0547 413 :TKK 7odcA 386 :MGA T0547 417 :ILLL 7odcA 390 :TVAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=100140 # 1y93A.413.112 read from T0547.t06.many.frag # found chain 1y93A in training set T0547 413 :TKKAILLLG 1y93A 217 :VHEIGHSLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100141 # 1odmA.413.252 read from T0547.t06.many.frag # found chain 1odmA in training set Warning: unaligning (T0547)G421 (1odmA)T261 because G (3-10) conformation "forbidden" or filtered. T0547 413 :TKKAILLL 1odmA 253 :CGSYMAHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=100142 # 1ak0.413.89 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 413 :TKKAILLLG 1ak0 90 :IANYTQRVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100143 # 1tl9A.413.166 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 413 :TKKAILLLG 1tl9A 192 :EKAYAKVNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100144 # 1ekqA.413.203 read from T0547.t06.many.frag # found chain 1ekqA in training set T0547 413 :TKKAILLLG 1ekqA 204 :VGAFCAVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100145 # 1jlyA.413.117 read from T0547.t06.many.frag # found chain 1jlyA in template set Warning: unaligning (T0547)K414 (1jlyA)G118 because L (left) conformation "forbidden" or filtered. T0547 413 :T 1jlyA 117 :L T0547 415 :KAILLLG 1jlyA 119 :HYTQNYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=100147 # 1kuuA.413.93 read from T0547.t06.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)G421 (1kuuA)D102 because S (epsilon) conformation "forbidden" or filtered. T0547 413 :TKKAILLL 1kuuA 94 :IGLSLLAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=100148 # 1ug3A.413.250 read from T0547.t06.many.frag # found chain 1ug3A in template set Warning: unaligning (T0547)G421 (1ug3A)I1492 because P (beta_P) conformation "forbidden" or filtered. T0547 413 :TKKAILLL 1ug3A 1484 :MTAVCYSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=100149 # 1gw5A.413.349 read from T0547.t06.many.frag # found chain 1gw5A in template set T0547 413 :TKKAILLLG 1gw5A 350 :LESMCTLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100150 # 1v7wA.413.434 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 413 :TKKAILLLG 1v7wA 435 :ICKYVMETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100151 # 1a12A.413.293 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)G421 (1a12A)D310 because P (beta_P) conformation "forbidden" or filtered. T0547 413 :TKKAILLL 1a12A 302 :GQHHTVCM Number of specific fragments extracted= 1 number of extra gaps= 1 total=100152 # 1qazA.413.213 read from T0547.t06.many.frag # found chain 1qazA in training set T0547 413 :TKKAILLLG 1qazA 217 :LGRYVQAMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100153 # 1z70X.413.141 read from T0547.t06.many.frag # found chain 1z70X in training set T0547 413 :TKKAILLLG 1z70X 1214 :AVAYCTWAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100154 # 1f86A.413.65 read from T0547.t06.many.frag # found chain 1f86A in training set T0547 413 :TKKAILLLG 1f86A 75 :TKSYWKALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100155 # 1rlr.413.485 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 413 :TKKAILLLG 1rlr 486 :VRALDALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=100156 # 1wurA.413.156 read from T0547.t06.many.frag # found chain 1wurA in template set T0547 413 :TKKAILLLG 1wurA 157 :AEAIQEVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100157 # 1zx8A.413.83 read from T0547.t06.many.frag # found chain 1zx8A in template set T0547 413 :TKKAILLLG 1zx8A 72 :GKALCLFFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100158 # 1pjr.413.394 read from T0547.t06.many.frag # found chain 1pjr in template set T0547 413 :TKKAILLLG 1pjr 395 :ILAYLRVIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100159 # 1mml.413.141 read from T0547.t06.many.frag # found chain 1mml in training set Warning: unaligning (T0547)K415 (1mml)D153 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1mml)R159 because P (beta_P) conformation "forbidden" or filtered. T0547 413 :TK 1mml 151 :LK T0547 416 :AILLL 1mml 154 :AFFCL Number of specific fragments extracted= 2 number of extra gaps= 2 total=100161 # 1rwhA.413.569 read from T0547.t06.many.frag # found chain 1rwhA in training set Warning: unaligning (T0547)L420 (1rwhA)D577 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1rwhA)D578 because G (3-10) conformation "forbidden" or filtered. T0547 413 :TKKAILL 1rwhA 570 :FGGYAML Number of specific fragments extracted= 1 number of extra gaps= 1 total=100162 # 1w6kA.413.485 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 413 :TKKAILLLG 1w6kA 486 :AVAVLLNMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=100163 # 1k5nA.413.167 read from T0547.t06.many.frag # found chain 1k5nA in training set T0547 413 :TKKAILLLG 1k5nA 168 :LRRYLENGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100164 # 1zd0A.413.57 read from T0547.t06.many.frag # found chain 1zd0A in training set Warning: unaligning (T0547)G421 (1zd0A)E65 because G (3-10) conformation "forbidden" or filtered. T0547 413 :TKKAILLL 1zd0A 57 :IIAIKAVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=100165 # 1w5qA.413.285 read from T0547.t06.many.frag # found chain 1w5qA in training set T0547 413 :TKKAILLLG 1w5qA 286 :SGEYAMHMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100166 # 1z53A.413.112 read from T0547.t06.many.frag # found chain 1z53A in template set Warning: unaligning (T0547)G421 (1z53A)G121 because P (beta_P) conformation "forbidden" or filtered. T0547 413 :TKKAILLL 1z53A 113 :VTAVQEMQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=100167 # 1zsqA.413.439 read from T0547.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0547)L419 (1zsqA)C515 because L (left) conformation "forbidden" or filtered. T0547 413 :TKKAIL 1zsqA 509 :LDHLYS T0547 420 :LG 1zsqA 516 :LF Number of specific fragments extracted= 2 number of extra gaps= 1 total=100169 # 2bmoA.413.414 read from T0547.t06.many.frag # found chain 2bmoA in training set T0547 413 :TKKAILLLG 2bmoA 415 :YRAYQAHIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100170 # 1xm9A.413.304 read from T0547.t06.many.frag # found chain 1xm9A in template set T0547 413 :TKKAILLLG 1xm9A 548 :AGALQNLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100171 # 1knwA.414.375 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 414 :KKAILLLGD 1knwA 376 :GAYGASMSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100172 # 7odcA.414.386 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)G421 (7odcA)A394 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KKAILLL 7odcA 387 :GAYTVAA T0547 422 :D 7odcA 395 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=100174 # 1y93A.414.113 read from T0547.t06.many.frag # found chain 1y93A in training set T0547 414 :KKAILLLGD 1y93A 218 :HEIGHSLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100175 # 1odmA.414.253 read from T0547.t06.many.frag # found chain 1odmA in training set Warning: unaligning (T0547)D422 (1odmA)N262 because L (left) conformation "forbidden" or filtered. T0547 414 :KKAILLLG 1odmA 254 :GSYMAHLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=100176 # 1ak0.414.90 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 414 :KKAILLLGD 1ak0 91 :ANYTQRVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=100177 # 1tl9A.414.167 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 414 :KKAILLLGD 1tl9A 193 :KAYAKVNGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100178 # 1gw5A.414.350 read from T0547.t06.many.frag # found chain 1gw5A in template set Warning: unaligning (T0547)G421 (1gw5A)S358 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1gw5A)S359 because E (beta_S) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1gw5A 351 :ESMCTLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=100179 # 1ug3A.414.251 read from T0547.t06.many.frag # found chain 1ug3A in template set Warning: unaligning (T0547)G421 (1ug3A)I1492 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1ug3A)I1493 because E (beta_S) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1ug3A 1485 :TAVCYSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=100180 # 1kuuA.414.94 read from T0547.t06.many.frag # found chain 1kuuA in template set T0547 414 :KKAILLLGD 1kuuA 95 :GLSLLAMDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=100181 # 1zx8A.414.84 read from T0547.t06.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)A416 (1zx8A)L75 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KK 1zx8A 73 :KA T0547 417 :ILLLGD 1zx8A 76 :CLFFGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=100183 # 1v7wA.414.435 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 414 :KKAILLLGD 1v7wA 436 :CKYVMETGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100184 # 1ekqA.414.204 read from T0547.t06.many.frag # found chain 1ekqA in training set Warning: unaligning (T0547)D422 (1ekqA)N213 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KKAILLLG 1ekqA 205 :GAFCAVEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=100185 # 2bmoA.414.415 read from T0547.t06.many.frag # found chain 2bmoA in training set T0547 414 :KKAILLLGD 2bmoA 416 :RAYQAHISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100186 # 1jlyA.414.118 read from T0547.t06.many.frag # found chain 1jlyA in template set Warning: unaligning (T0547)K414 (1jlyA)G118 because L (left) conformation "forbidden" or filtered. T0547 415 :KAILLLGD 1jlyA 119 :HYTQNYTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=100187 # 1rwhA.414.570 read from T0547.t06.many.frag # found chain 1rwhA in training set Warning: unaligning (T0547)K414 (1rwhA)G571 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L420 (1rwhA)D577 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1rwhA)D578 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1rwhA)S579 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILL 1rwhA 572 :GYAML Number of specific fragments extracted= 1 number of extra gaps= 2 total=100188 # 1wurA.414.157 read from T0547.t06.many.frag # found chain 1wurA in template set T0547 414 :KKAILLLGD 1wurA 158 :EAIQEVLEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=100189 # 1zd0A.414.58 read from T0547.t06.many.frag # found chain 1zd0A in training set Warning: unaligning (T0547)G421 (1zd0A)E65 because G (3-10) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1zd0A 58 :IAIKAVK T0547 422 :D 1zd0A 66 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=100191 # 1xm9A.414.305 read from T0547.t06.many.frag # found chain 1xm9A in template set T0547 414 :KKAILLLGD 1xm9A 549 :GALQNLTAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100192 # 1w6kA.414.486 read from T0547.t06.many.frag # found chain 1w6kA in template set Warning: unaligning (T0547)D422 (1w6kA)N495 because E (beta_S) conformation "forbidden" or filtered. T0547 414 :KKAILLLG 1w6kA 487 :VAVLLNMR Number of specific fragments extracted= 1 number of extra gaps= 1 total=100193 # 1a12A.414.294 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)G421 (1a12A)D310 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1a12A 303 :QHHTVCM T0547 422 :D 1a12A 311 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=100195 # 1ok7A.414.139 read from T0547.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0547)G421 (1ok7A)A147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1ok7A)H148 because E (beta_S) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1ok7A 140 :EATQFSM Number of specific fragments extracted= 1 number of extra gaps= 1 total=100196 # 1mml.414.142 read from T0547.t06.many.frag # found chain 1mml in training set T0547 414 :KKAILLLGD 1mml 152 :KDAFFCLRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100197 # 1k5nA.414.168 read from T0547.t06.many.frag # found chain 1k5nA in training set T0547 414 :KKAILLLGD 1k5nA 169 :RRYLENGKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100198 # 1f86A.414.66 read from T0547.t06.many.frag # found chain 1f86A in training set T0547 414 :KKAILLLGD 1f86A 76 :KSYWKALGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=100199 # 1j0dA.414.324 read from T0547.t06.many.frag # found chain 1j0dA in template set Warning: unaligning (T0547)K414 (1j0dA)G325 because T (delta_L) conformation "forbidden" or filtered. T0547 415 :KAILLLGD 1j0dA 326 :APALSAYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=100200 # 2bo9B.414.144 read from T0547.t06.many.frag # found chain 2bo9B in training set Warning: unaligning (T0547)D422 (2bo9B)T153 because Y (epsilon') conformation "forbidden" or filtered. T0547 414 :KKAILLLG 2bo9B 145 :GYIIWQNS Number of specific fragments extracted= 1 number of extra gaps= 1 total=100201 # 1zsqA.414.440 read from T0547.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0547)G421 (1zsqA)F517 because E (beta_S) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1zsqA 510 :DHLYSCL T0547 422 :D 1zsqA 518 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=100203 # 1u7gA.414.326 read from T0547.t06.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G421 (1u7gA)A334 because P (beta_P) conformation "forbidden" or filtered. T0547 414 :KKAILLL 1u7gA 327 :IMTGIFA T0547 422 :D 1u7gA 335 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=100205 # 1u7gA.414.267 read from T0547.t06.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)C276 Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)C276 T0547 414 :KKAILLL 1u7gA 268 :GLVGVTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=100206 # 1z53A.414.113 read from T0547.t06.many.frag # found chain 1z53A in template set Warning: unaligning (T0547)L420 (1z53A)Q120 because T (delta_L) conformation "forbidden" or filtered. T0547 414 :KKAILL 1z53A 114 :TAVQEM T0547 421 :GD 1z53A 121 :GP Number of specific fragments extracted= 2 number of extra gaps= 1 total=100208 # 1knwA.415.376 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G421 (1knwA)S383 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLL 1knwA 377 :AYGASM T0547 422 :DK 1knwA 384 :SN Number of specific fragments extracted= 2 number of extra gaps= 1 total=100210 # 7odcA.415.387 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A416 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. T0547 415 :K 7odcA 388 :A T0547 417 :ILLLGDK 7odcA 390 :TVAAAST Number of specific fragments extracted= 2 number of extra gaps= 1 total=100212 # 1y93A.415.114 read from T0547.t06.many.frag # found chain 1y93A in training set T0547 415 :KAILLLGDK 1y93A 219 :EIGHSLGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100213 # 1odmA.415.254 read from T0547.t06.many.frag # found chain 1odmA in training set Warning: unaligning (T0547)G421 (1odmA)T261 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1odmA)N262 because L (left) conformation "forbidden" or filtered. T0547 415 :KAILLL 1odmA 255 :SYMAHL T0547 423 :K 1odmA 263 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=100215 # 1ak0.415.91 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 415 :KAILLLGDK 1ak0 92 :NYTQRVSDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100216 # 1gw5A.415.351 read from T0547.t06.many.frag # found chain 1gw5A in template set T0547 415 :KAILLLGDK 1gw5A 352 :SMCTLASSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100217 # 1zx8A.415.85 read from T0547.t06.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)G421 (1zx8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0547 415 :KAILLL 1zx8A 74 :ALCLFF T0547 422 :DK 1zx8A 81 :KT Number of specific fragments extracted= 2 number of extra gaps= 1 total=100219 # 1tl9A.415.168 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)D422 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 415 :KAILLLG 1tl9A 194 :AYAKVNG T0547 423 :K 1tl9A 202 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=100221 # 2bmoA.415.416 read from T0547.t06.many.frag # found chain 2bmoA in training set T0547 415 :KAILLLGDK 2bmoA 417 :AYQAHISSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100222 # 1zd0A.415.59 read from T0547.t06.many.frag # found chain 1zd0A in training set Warning: unaligning (T0547)G421 (1zd0A)E65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1zd0A)G66 because L (left) conformation "forbidden" or filtered. T0547 415 :KAILLL 1zd0A 59 :AIKAVK T0547 423 :K 1zd0A 67 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=100224 # 1kuuA.415.95 read from T0547.t06.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)D422 (1kuuA)Y103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1kuuA)E104 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLLG 1kuuA 96 :LSLLAMD Number of specific fragments extracted= 1 number of extra gaps= 1 total=100225 # 1xm9A.415.306 read from T0547.t06.many.frag # found chain 1xm9A in template set Warning: unaligning (T0547)K423 (1xm9A)K558 because L (left) conformation "forbidden" or filtered. T0547 415 :KAILLLGD 1xm9A 550 :ALQNLTAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=100226 # 1ug3A.415.252 read from T0547.t06.many.frag # found chain 1ug3A in template set Warning: unaligning (T0547)K423 (1ug3A)F1494 because N (gamma') conformation "forbidden" or filtered. T0547 415 :KAILLLGD 1ug3A 1486 :AVCYSAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=100227 # 1wurA.415.158 read from T0547.t06.many.frag # found chain 1wurA in template set Warning: unaligning (T0547)D422 (1wurA)P166 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLLG 1wurA 159 :AIQEVLE T0547 423 :K 1wurA 167 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=100229 # 1v7wA.415.436 read from T0547.t06.many.frag # found chain 1v7wA in training set T0547 415 :KAILLLGDK 1v7wA 437 :KYVMETGET Number of specific fragments extracted= 1 number of extra gaps= 0 total=100230 # 1k5nA.415.169 read from T0547.t06.many.frag # found chain 1k5nA in training set T0547 415 :KAILLLGDK 1k5nA 170 :RYLENGKET Number of specific fragments extracted= 1 number of extra gaps= 0 total=100231 # 1rwhA.415.571 read from T0547.t06.many.frag # found chain 1rwhA in training set Warning: unaligning (T0547)K423 (1rwhA)P580 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLLGD 1rwhA 572 :GYAMLDDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=100232 # 1jlyA.415.119 read from T0547.t06.many.frag # found chain 1jlyA in template set Warning: unaligning (T0547)K423 (1jlyA)G127 because Y (epsilon') conformation "forbidden" or filtered. T0547 415 :KAILLLGD 1jlyA 119 :HYTQNYTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=100233 # 1ok7A.415.140 read from T0547.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0547)G421 (1ok7A)A147 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLL 1ok7A 141 :ATQFSM T0547 422 :DK 1ok7A 148 :HQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=100235 # 1a12A.415.295 read from T0547.t06.many.frag # found chain 1a12A in training set T0547 415 :KAILLLGDK 1a12A 304 :HHTVCMDSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100236 # 1u7gA.415.327 read from T0547.t06.many.frag # found chain 1u7gA in training set T0547 415 :KAILLLGDK 1u7gA 328 :MTGIFAASS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100237 # 1ga6A.415.297 read from T0547.t06.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)D422 (1ga6A)S305 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1ga6A)N306 because L (left) conformation "forbidden" or filtered. T0547 415 :KAILLLG 1ga6A 298 :ARLQSAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=100238 # 1pjr.415.396 read from T0547.t06.many.frag # found chain 1pjr in template set T0547 415 :KAILLLGDK 1pjr 397 :AYLRVIANP Number of specific fragments extracted= 1 number of extra gaps= 0 total=100239 # 1i4wA.415.187 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)D422 (1i4wA)R183 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1i4wA)P184 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLLG 1i4wA 176 :TARKLLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=100240 # 1tf5A.415.639 read from T0547.t06.many.frag # found chain 1tf5A in template set Warning: unaligning (T0547)D422 (1tf5A)P644 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLLG 1tf5A 637 :RAIAAYT T0547 423 :K 1tf5A 645 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=100242 # 1pc6A.415.54 read from T0547.t06.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)G421 (1pc6A)E61 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLL 1pc6A 55 :DVSRQV T0547 422 :DK 1pc6A 62 :WH Number of specific fragments extracted= 2 number of extra gaps= 1 total=100244 # 1szqA.415.326 read from T0547.t06.many.frag # found chain 1szqA in template set Warning: unaligning (T0547)G421 (1szqA)D333 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1szqA)K334 because E (beta_S) conformation "forbidden" or filtered. T0547 415 :KAILLL 1szqA 327 :ACIRII T0547 423 :K 1szqA 335 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=100246 # 1yaxA.415.84 read from T0547.t06.many.frag # found chain 1yaxA in template set T0547 415 :KAILLLGDK 1yaxA 128 :ATSTLLSED Number of specific fragments extracted= 1 number of extra gaps= 0 total=100247 # 1hbnB.415.392 read from T0547.t06.many.frag # found chain 1hbnB in training set T0547 415 :KAILLLGDK 1hbnB 394 :AAAMALDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100248 # 1w6kA.415.487 read from T0547.t06.many.frag # found chain 1w6kA in template set Warning: unaligning (T0547)G421 (1w6kA)R494 because P (beta_P) conformation "forbidden" or filtered. T0547 415 :KAILLL 1w6kA 488 :AVLLNM T0547 422 :DK 1w6kA 495 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=100250 # 1knwA.416.377 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A416 (1knwA)Y378 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1knwA)S383 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLL 1knwA 379 :GASM T0547 422 :DKQ 1knwA 384 :SNY Number of specific fragments extracted= 2 number of extra gaps= 2 total=100252 # 7odcA.416.388 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)A416 (7odcA)Y389 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (7odcA)T396 because G (3-10) conformation "forbidden" or filtered. T0547 417 :ILLLGD 7odcA 390 :TVAAAS T0547 424 :Q 7odcA 397 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=100254 # 1ak0.416.92 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 416 :AILLLGDKQ 1ak0 93 :YTQRVSDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100255 # 1y93A.416.115 read from T0547.t06.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)D422 (1y93A)L226 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AILLLG 1y93A 220 :IGHSLG T0547 423 :KQ 1y93A 227 :GH Number of specific fragments extracted= 2 number of extra gaps= 1 total=100257 # 1odmA.416.255 read from T0547.t06.many.frag # found chain 1odmA in training set Warning: unaligning (T0547)D422 (1odmA)N262 because L (left) conformation "forbidden" or filtered. T0547 416 :AILLLG 1odmA 256 :YMAHLT T0547 423 :KQ 1odmA 263 :NY Number of specific fragments extracted= 2 number of extra gaps= 1 total=100259 # 1gw5A.416.352 read from T0547.t06.many.frag # found chain 1gw5A in template set Warning: unaligning (T0547)G421 (1gw5A)S358 because G (3-10) conformation "forbidden" or filtered. T0547 416 :AILLL 1gw5A 353 :MCTLA T0547 422 :DKQ 1gw5A 359 :SEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=100261 # 1zx8A.416.86 read from T0547.t06.many.frag # found chain 1zx8A in template set T0547 416 :AILLLGDKQ 1zx8A 75 :LCLFFGKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=100262 # 1kuuA.416.96 read from T0547.t06.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)G421 (1kuuA)D102 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1kuuA)E104 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AILLL 1kuuA 97 :SLLAM T0547 422 :D 1kuuA 103 :Y T0547 424 :Q 1kuuA 105 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=100265 # 1ga6A.416.298 read from T0547.t06.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)G421 (1ga6A)N304 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1ga6A)S305 because L (left) conformation "forbidden" or filtered. T0547 416 :AILLL 1ga6A 299 :RLQSA T0547 423 :KQ 1ga6A 306 :NS Number of specific fragments extracted= 2 number of extra gaps= 1 total=100267 # 2aqjA.416.283 read from T0547.t06.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)L420 (2aqjA)F288 because Y (epsilon') conformation "forbidden" or filtered. T0547 416 :AILL 2aqjA 284 :SGYV T0547 421 :GDKQ 2aqjA 289 :SSHF Number of specific fragments extracted= 2 number of extra gaps= 1 total=100269 # 1zd0A.416.60 read from T0547.t06.many.frag # found chain 1zd0A in training set T0547 416 :AILLLGDKQ 1zd0A 60 :IKAVKEGRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100270 # 2bmoA.416.417 read from T0547.t06.many.frag # found chain 2bmoA in training set Warning: unaligning (T0547)G421 (2bmoA)S423 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (2bmoA)S424 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (2bmoA)N426 because Y (epsilon') conformation "forbidden" or filtered. T0547 416 :AILLL 2bmoA 418 :YQAHI T0547 423 :K 2bmoA 425 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=100272 # 1xm9A.416.307 read from T0547.t06.many.frag # found chain 1xm9A in template set Warning: unaligning (T0547)Q424 (1xm9A)G559 because Y (epsilon') conformation "forbidden" or filtered. T0547 416 :AILLLGDK 1xm9A 551 :LQNLTASK Number of specific fragments extracted= 1 number of extra gaps= 1 total=100273 # 1i4wA.416.188 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)G421 (1i4wA)A182 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1i4wA)G185 because T (delta_L) conformation "forbidden" or filtered. T0547 416 :AILLL 1i4wA 177 :ARKLL T0547 422 :DK 1i4wA 183 :RP Number of specific fragments extracted= 2 number of extra gaps= 2 total=100275 # 1tf5A.416.640 read from T0547.t06.many.frag # found chain 1tf5A in template set T0547 416 :AILLLGDKQ 1tf5A 638 :AIAAYTPRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100276 # 1a12A.416.296 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)G421 (1a12A)D310 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AILLL 1a12A 305 :HTVCM T0547 422 :DKQ 1a12A 311 :SEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=100278 # 1hbnB.416.393 read from T0547.t06.many.frag # found chain 1hbnB in training set Warning: unaligning (T0547)G421 (1hbnB)D400 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AILLL 1hbnB 395 :AAMAL T0547 422 :DKQ 1hbnB 401 :AGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=100280 # 1mtpA.416.218 read from T0547.t06.many.frag # found chain 1mtpA in training set T0547 416 :AILLLGDKQ 1mtpA 221 :VDVLLPPGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=100281 # 2axtB.416.316 read from T0547.t06.many.frag # found chain 2axtB in template set Warning: unaligning (T0547)D422 (2axtB)G323 because Y (epsilon') conformation "forbidden" or filtered. T0547 416 :AILLLG 2axtB 317 :NNPAKG T0547 423 :KQ 2axtB 324 :LF Number of specific fragments extracted= 2 number of extra gaps= 1 total=100283 # 1uw4B.416.185 read from T0547.t06.many.frag # found chain 1uw4B in template set T0547 416 :AILLLGDKQ 1uw4B 953 :VWWKKSLEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100284 # 1wd3A.416.289 read from T0547.t06.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)I417 (1wd3A)E308 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L418 (1wd3A)G309 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L419 (1wd3A)V310 because Y (epsilon') conformation "forbidden" or filtered. T0547 416 :A 1wd3A 307 :Y T0547 420 :LGDKQ 1wd3A 311 :MTSGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=100286 # 1tl9A.416.169 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)D422 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 416 :AILLLG 1tl9A 195 :YAKVNG T0547 423 :KQ 1tl9A 202 :YE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100288 # 1ok7A.416.141 read from T0547.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0547)K423 (1ok7A)Q149 because L (left) conformation "forbidden" or filtered. T0547 416 :AILLLGD 1ok7A 142 :TQFSMAH T0547 424 :Q 1ok7A 150 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=100290 # 1u7gA.416.328 read from T0547.t06.many.frag # found chain 1u7gA in training set T0547 416 :AILLLGDKQ 1u7gA 329 :TGIFAASSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100291 # 1pc6A.416.55 read from T0547.t06.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)K423 (1pc6A)H63 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1pc6A)G64 because T (delta_L) conformation "forbidden" or filtered. T0547 416 :AILLLGD 1pc6A 56 :VSRQVEW Number of specific fragments extracted= 1 number of extra gaps= 1 total=100292 # 1iomA.416.209 read from T0547.t06.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)D422 (1iomA)G216 because P (beta_P) conformation "forbidden" or filtered. T0547 416 :AILLLG 1iomA 210 :AVASLK T0547 423 :KQ 1iomA 217 :PR Number of specific fragments extracted= 2 number of extra gaps= 1 total=100294 # 1pjr.416.397 read from T0547.t06.many.frag # found chain 1pjr in template set T0547 416 :AILLLGDKQ 1pjr 398 :YLRVIANPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=100295 # 1z90A.416.303 read from T0547.t06.many.frag # found chain 1z90A in template set Warning: unaligning (T0547)K423 (1z90A)D311 because L (left) conformation "forbidden" or filtered. T0547 416 :AILLLGD 1z90A 304 :IKKLVEA T0547 424 :Q 1z90A 312 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=100297 # 1wuaA.416.315 read from T0547.t06.many.frag # found chain 1wuaA in template set T0547 416 :AILLLGDKQ 1wuaA 316 :EITALAPST Number of specific fragments extracted= 1 number of extra gaps= 0 total=100298 # 2pvbA.416.44 read from T0547.t06.many.frag # found chain 2pvbA in training set Warning: unaligning (T0547)G421 (2pvbA)D51 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (2pvbA)K54 because L (left) conformation "forbidden" or filtered. T0547 416 :AILLL 2pvbA 46 :AFYVI T0547 422 :DK 2pvbA 52 :QD Number of specific fragments extracted= 2 number of extra gaps= 2 total=100300 # 1knwA.417.378 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 417 :ILLLGDKQN 1knwA 379 :GASMSSNYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=100301 # 7odcA.417.389 read from T0547.t06.many.frag # found chain 7odcA in training set T0547 417 :ILLLGDKQN 7odcA 390 :TVAAASTFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=100302 # 1ak0.417.93 read from T0547.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0547)G421 (1ak0)S98 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1ak0)L102 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLL 1ak0 94 :TQRV T0547 422 :DKQ 1ak0 99 :DSS Number of specific fragments extracted= 2 number of extra gaps= 2 total=100304 # 1odmA.417.256 read from T0547.t06.many.frag # found chain 1odmA in training set Warning: unaligning (T0547)G421 (1odmA)T261 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1odmA)N262 because L (left) conformation "forbidden" or filtered. T0547 417 :ILLL 1odmA 257 :MAHL T0547 423 :KQN 1odmA 263 :NYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=100306 # 2aqjA.417.284 read from T0547.t06.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)L420 (2aqjA)F288 because Y (epsilon') conformation "forbidden" or filtered. T0547 417 :ILL 2aqjA 285 :GYV T0547 421 :GDKQN 2aqjA 289 :SSHFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=100308 # 1y93A.417.116 read from T0547.t06.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)K423 (1y93A)G227 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLLGD 1y93A 221 :GHSLGL T0547 424 :QN 1y93A 228 :HS Number of specific fragments extracted= 2 number of extra gaps= 1 total=100310 # 1ga6A.417.299 read from T0547.t06.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)G421 (1ga6A)N304 because G (3-10) conformation "forbidden" or filtered. T0547 417 :ILLL 1ga6A 300 :LQSA T0547 422 :DKQN 1ga6A 305 :SNSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=100312 # 1wd3A.417.290 read from T0547.t06.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)L418 (1wd3A)G309 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (1wd3A)T312 because E (beta_S) conformation "forbidden" or filtered. T0547 417 :I 1wd3A 308 :E T0547 419 :LL 1wd3A 310 :VM T0547 422 :DKQN 1wd3A 313 :SGYP Number of specific fragments extracted= 3 number of extra gaps= 2 total=100315 # 1gw5A.417.353 read from T0547.t06.many.frag # found chain 1gw5A in template set Warning: unaligning (T0547)D422 (1gw5A)S359 because E (beta_S) conformation "forbidden" or filtered. T0547 417 :ILLLG 1gw5A 354 :CTLAS T0547 423 :KQN 1gw5A 360 :EFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=100317 # 1c8nA.417.153 read from T0547.t06.many.frag # found chain 1c8nA in template set Warning: unaligning (T0547)L419 (1c8nA)C156 because Y (epsilon') conformation "forbidden" or filtered. T0547 417 :IL 1c8nA 154 :AM T0547 420 :LGDKQN 1c8nA 157 :LSYDRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=100319 # 1yukA.417.21 read from T0547.t06.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)G421 (1yukA)K26 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLL 1yukA 22 :TWCQ T0547 422 :DKQN 1yukA 27 :LNFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=100321 # 1iomA.417.210 read from T0547.t06.many.frag # found chain 1iomA in training set T0547 417 :ILLLGDKQN 1iomA 211 :VASLKGPRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=100322 # 1kuuA.417.97 read from T0547.t06.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)G421 (1kuuA)D102 because S (epsilon) conformation "forbidden" or filtered. T0547 417 :ILLL 1kuuA 98 :LLAM T0547 422 :DKQN 1kuuA 103 :YEKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=100324 # 1a12A.417.297 read from T0547.t06.many.frag # found chain 1a12A in training set Warning: unaligning (T0547)G421 (1a12A)D310 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLL 1a12A 306 :TVCM T0547 422 :DKQN 1a12A 311 :SEGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=100326 # 2ahrA.417.123 read from T0547.t06.many.frag # found chain 2ahrA in template set Warning: unaligning (T0547)L420 (2ahrA)T124 because Y (epsilon') conformation "forbidden" or filtered. T0547 417 :ILL 2ahrA 121 :TAL T0547 421 :GDKQN 2ahrA 125 :GNALV Number of specific fragments extracted= 2 number of extra gaps= 1 total=100328 # 1hbnB.417.394 read from T0547.t06.many.frag # found chain 1hbnB in training set Warning: unaligning (T0547)K423 (1hbnB)G402 because T (delta_L) conformation "forbidden" or filtered. T0547 417 :ILLLGD 1hbnB 396 :AMALDA T0547 424 :QN 1hbnB 403 :TQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=100330 # 1tq5A.417.115 read from T0547.t06.many.frag # found chain 1tq5A in training set T0547 417 :ILLLGDKQN 1tq5A 116 :QIWIMPEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=100331 # 1dy5A.417.81 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)G421 (1dy5A)E86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1dy5A)S90 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLL 1dy5A 82 :TDCR T0547 422 :DKQ 1dy5A 87 :TGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=100333 # 1i4wA.417.189 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)G421 (1i4wA)A182 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1i4wA)G185 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1i4wA)M186 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLL 1i4wA 178 :RKLL T0547 422 :DK 1i4wA 183 :RP Number of specific fragments extracted= 2 number of extra gaps= 2 total=100335 # 1xfsA.417.60 read from T0547.t06.many.frag # found chain 1xfsA in training set Warning: unaligning (T0547)G421 (1xfsA)D65 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1xfsA)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 417 :ILLL 1xfsA 61 :TVMQ T0547 422 :DK 1xfsA 66 :PE T0547 425 :N 1xfsA 69 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=100338 # 2pvbA.417.45 read from T0547.t06.many.frag # found chain 2pvbA in training set Warning: unaligning (T0547)Q424 (2pvbA)K54 because L (left) conformation "forbidden" or filtered. T0547 417 :ILLLGDK 2pvbA 47 :FYVIDQD T0547 425 :N 2pvbA 55 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=100340 # 1ok7A.417.142 read from T0547.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0547)G421 (1ok7A)A147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1ok7A)Q149 because L (left) conformation "forbidden" or filtered. T0547 417 :ILLL 1ok7A 143 :QFSM T0547 422 :D 1ok7A 148 :H T0547 424 :QN 1ok7A 150 :DV Number of specific fragments extracted= 3 number of extra gaps= 2 total=100343 # 1zd0A.417.61 read from T0547.t06.many.frag # found chain 1zd0A in training set Warning: unaligning (T0547)D422 (1zd0A)G66 because L (left) conformation "forbidden" or filtered. T0547 417 :ILLLG 1zd0A 61 :KAVKE T0547 423 :KQN 1zd0A 67 :RSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=100345 # 1mtpA.417.219 read from T0547.t06.many.frag # found chain 1mtpA in training set Warning: unaligning (T0547)G421 (1mtpA)P226 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLL 1mtpA 222 :DVLL T0547 422 :DKQN 1mtpA 227 :PGTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=100347 # 1xrsA.417.369 read from T0547.t06.many.frag # found chain 1xrsA in template set T0547 417 :ILLLGDKQN 1xrsA 370 :KYMPPTKFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=100348 # 2axtB.417.317 read from T0547.t06.many.frag # found chain 2axtB in template set Warning: unaligning (T0547)G421 (2axtB)G322 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (2axtB)G323 because Y (epsilon') conformation "forbidden" or filtered. T0547 417 :ILLL 2axtB 318 :NPAK T0547 423 :KQN 2axtB 324 :LFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=100350 # 1uw4B.417.186 read from T0547.t06.many.frag # found chain 1uw4B in template set Warning: unaligning (T0547)G421 (1uw4B)S958 because G (3-10) conformation "forbidden" or filtered. T0547 417 :ILLL 1uw4B 954 :WWKK T0547 422 :DKQN 1uw4B 959 :LEVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=100352 # 1k47A.417.263 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)G421 (1k47A)S266 because E (beta_S) conformation "forbidden" or filtered. T0547 417 :ILLL 1k47A 262 :LEGL T0547 422 :DKQN 1k47A 267 :TDIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=100354 # 1v04A.417.178 read from T0547.t06.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)Q424 (1v04A)F186 because P (beta_P) conformation "forbidden" or filtered. T0547 417 :ILLLGDK 1v04A 179 :YATNDHY T0547 425 :N 1v04A 187 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=100356 # 1okcA.417.235 read from T0547.t06.many.frag # found chain 1okcA in template set T0547 417 :ILLLGDKQN 1okcA 236 :RMMMQSGRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100357 # 1knwA.418.379 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G421 (1knwA)S383 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1knwA)S384 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1knwA)N387 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1knwA)S388 because L (left) conformation "forbidden" or filtered. T0547 418 :LLL 1knwA 380 :ASM T0547 423 :KQ 1knwA 385 :NY Number of specific fragments extracted= 2 number of extra gaps= 2 total=100359 # 7odcA.418.390 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)D422 (7odcA)S395 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. T0547 418 :LLLG 7odcA 391 :VAAA T0547 423 :KQN 7odcA 396 :TFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=100361 # 2aqjA.418.285 read from T0547.t06.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)L420 (2aqjA)F288 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G421 (2aqjA)S289 because E (beta_S) conformation "forbidden" or filtered. T0547 418 :LL 2aqjA 286 :YV T0547 422 :DKQNP 2aqjA 290 :SHFTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=100363 # 1ak0.418.94 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 418 :LLLGDKQNP 1ak0 95 :QRVSDSSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100364 # 1wd3A.418.291 read from T0547.t06.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)L418 (1wd3A)G309 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L419 (1wd3A)V310 because Y (epsilon') conformation "forbidden" or filtered. T0547 420 :LGDKQNP 1wd3A 311 :MTSGYPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=100365 # 1yukA.418.22 read from T0547.t06.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)G421 (1yukA)K26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1yukA)L27 because P (beta_P) conformation "forbidden" or filtered. T0547 418 :LLL 1yukA 23 :WCQ T0547 423 :KQNP 1yukA 28 :NFTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=100367 # 1odmA.418.257 read from T0547.t06.many.frag # found chain 1odmA in training set T0547 418 :LLLGDKQNP 1odmA 258 :AHLTNNYYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100368 # 2ahrA.418.124 read from T0547.t06.many.frag # found chain 2ahrA in template set Warning: unaligning (T0547)G421 (2ahrA)G125 because E (beta_S) conformation "forbidden" or filtered. T0547 418 :LLL 2ahrA 122 :ALT T0547 422 :DKQNP 2ahrA 126 :NALVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=100370 # 1xrsA.418.370 read from T0547.t06.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)N425 (1xrsA)M378 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1xrsA)T379 because E (beta_S) conformation "forbidden" or filtered. T0547 418 :LLLGDKQ 1xrsA 371 :YMPPTKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=100371 # 1ga6A.418.300 read from T0547.t06.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)D422 (1ga6A)S305 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1ga6A)N306 because L (left) conformation "forbidden" or filtered. T0547 418 :LLLG 1ga6A 301 :QSAN T0547 424 :QNP 1ga6A 307 :SLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=100373 # 1nc5A.418.288 read from T0547.t06.many.frag # found chain 1nc5A in training set T0547 418 :LLLGDKQNP 1nc5A 289 :KGINKGYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=100374 # 1c8nA.418.154 read from T0547.t06.many.frag # found chain 1c8nA in template set Warning: unaligning (T0547)N425 (1c8nA)N162 because G (3-10) conformation "forbidden" or filtered. T0547 418 :LLLGDKQ 1c8nA 155 :MCLSYDR T0547 426 :P 1c8nA 163 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=100376 # 1tq5A.418.116 read from T0547.t06.many.frag # found chain 1tq5A in training set Warning: unaligning (T0547)P426 (1tq5A)G125 because L (left) conformation "forbidden" or filtered. T0547 418 :LLLGDKQN 1tq5A 117 :IWIMPEEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=100377 # 1dy5A.418.82 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)P426 (1dy5A)K91 because E (beta_S) conformation "forbidden" or filtered. T0547 418 :LLLGDKQN 1dy5A 83 :DCRETGSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=100378 # 2pvbA.418.46 read from T0547.t06.many.frag # found chain 2pvbA in training set Warning: unaligning (T0547)Q424 (2pvbA)K54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2pvbA)G56 because T (delta_L) conformation "forbidden" or filtered. T0547 418 :LLLGDK 2pvbA 48 :YVIDQD T0547 425 :N 2pvbA 55 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=100380 # 1gw5A.418.354 read from T0547.t06.many.frag # found chain 1gw5A in template set T0547 418 :LLLGDKQNP 1gw5A 355 :TLASSEFSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=100381 # 1hbnB.418.395 read from T0547.t06.many.frag # found chain 1hbnB in training set Warning: unaligning (T0547)K423 (1hbnB)G402 because T (delta_L) conformation "forbidden" or filtered. T0547 418 :LLLGD 1hbnB 397 :MALDA T0547 424 :QNP 1hbnB 403 :TQM Number of specific fragments extracted= 2 number of extra gaps= 1 total=100383 # 1kuuA.418.98 read from T0547.t06.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)G421 (1kuuA)D102 because S (epsilon) conformation "forbidden" or filtered. T0547 418 :LLL 1kuuA 99 :LAM T0547 422 :DKQNP 1kuuA 103 :YEKDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100385 # 2axtB.418.318 read from T0547.t06.many.frag # found chain 2axtB in template set Warning: unaligning (T0547)D422 (2axtB)G323 because Y (epsilon') conformation "forbidden" or filtered. T0547 418 :LLLG 2axtB 319 :PAKG T0547 423 :KQNP 2axtB 324 :LFRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=100387 # 1gqeA.418.200 read from T0547.t06.many.frag # found chain 1gqeA in template set Warning: unaligning (T0547)L420 (1gqeA)R203 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1gqeA)D208 because P (beta_P) conformation "forbidden" or filtered. T0547 418 :LL 1gqeA 201 :LV T0547 421 :GDKQ 1gqeA 204 :KSPF T0547 426 :P 1gqeA 209 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=100390 # 1k47A.418.264 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)P426 (1k47A)T271 because E (beta_S) conformation "forbidden" or filtered. T0547 418 :LLLGDKQN 1k47A 263 :EGLSTDIY Number of specific fragments extracted= 1 number of extra gaps= 1 total=100391 # 1u7gA.418.271 read from T0547.t06.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)C276 Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)C276 T0547 418 :LLL 1u7gA 272 :VTP T0547 423 :KQNP 1u7gA 277 :GYIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=100393 # 1iomA.418.211 read from T0547.t06.many.frag # found chain 1iomA in training set Warning: unaligning (T0547)P426 (1iomA)G220 because T (delta_L) conformation "forbidden" or filtered. T0547 418 :LLLGDKQN 1iomA 212 :ASLKGPRH Number of specific fragments extracted= 1 number of extra gaps= 1 total=100394 # 1ok7A.418.143 read from T0547.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0547)K423 (1ok7A)Q149 because L (left) conformation "forbidden" or filtered. T0547 418 :LLLGD 1ok7A 144 :FSMAH T0547 424 :QNP 1ok7A 150 :DVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=100396 # 1wbeA.418.132 read from T0547.t06.many.frag # found chain 1wbeA in training set T0547 418 :LLLGDKQNP 1wbeA 133 :EMALKKYHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100397 # 1v04A.418.179 read from T0547.t06.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)D422 (1v04A)H184 because Y (epsilon') conformation "forbidden" or filtered. T0547 418 :LLLG 1v04A 180 :ATND T0547 423 :KQNP 1v04A 185 :YFID Number of specific fragments extracted= 2 number of extra gaps= 1 total=100399 # 1h54A.418.200 read from T0547.t06.many.frag # found chain 1h54A in template set Warning: unaligning (T0547)G421 (1h54A)K204 because E (beta_S) conformation "forbidden" or filtered. T0547 418 :LLL 1h54A 201 :IVA T0547 422 :DKQNP 1h54A 205 :TTPNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=100401 # 1y93A.418.117 read from T0547.t06.many.frag # found chain 1y93A in training set Warning: unaligning (T0547)Q424 (1y93A)H228 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1y93A)S230 because G (3-10) conformation "forbidden" or filtered. T0547 418 :LLLGDK 1y93A 222 :HSLGLG T0547 425 :N 1y93A 229 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=100403 # 1ra6A.418.308 read from T0547.t06.many.frag # found chain 1ra6A in template set T0547 418 :LLLGDKQNP 1ra6A 309 :LLKTYKGID Number of specific fragments extracted= 1 number of extra gaps= 0 total=100404 # 1u61A.418.60 read from T0547.t06.many.frag # found chain 1u61A in template set Warning: unaligning (T0547)K423 (1u61A)A63 because L (left) conformation "forbidden" or filtered. T0547 418 :LLLGD 1u61A 58 :HLLET T0547 424 :QNP 1u61A 64 :FLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=100406 # 1knwA.419.380 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N425 (1knwA)N387 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1knwA)S388 because L (left) conformation "forbidden" or filtered. T0547 419 :LLGDKQ 1knwA 381 :SMSSNY T0547 427 :A 1knwA 389 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=100408 # 7odcA.419.391 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P426 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. T0547 419 :LLGDKQN 7odcA 392 :AAASTFN T0547 427 :A 7odcA 400 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=100410 # 2aqjA.419.286 read from T0547.t06.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)L420 (2aqjA)F288 because Y (epsilon') conformation "forbidden" or filtered. T0547 419 :L 2aqjA 287 :V T0547 421 :GDKQNPA 2aqjA 289 :SSHFTSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=100412 # 1nc5A.419.289 read from T0547.t06.many.frag # found chain 1nc5A in training set T0547 419 :LLGDKQNPA 1nc5A 290 :GINKGYLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=100413 # 2ahrA.419.125 read from T0547.t06.many.frag # found chain 2ahrA in template set Warning: unaligning (T0547)L420 (2ahrA)T124 because Y (epsilon') conformation "forbidden" or filtered. T0547 419 :L 2ahrA 123 :L T0547 421 :GDKQNPA 2ahrA 125 :GNALVSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=100415 # 1xrsA.419.371 read from T0547.t06.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)N425 (1xrsA)M378 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1xrsA)T379 because E (beta_S) conformation "forbidden" or filtered. T0547 419 :LLGDKQ 1xrsA 372 :MPPTKF T0547 427 :A 1xrsA 380 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=100417 # 1wd3A.419.292 read from T0547.t06.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)L419 (1wd3A)V310 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1wd3A)G314 because S (epsilon) conformation "forbidden" or filtered. T0547 420 :LGD 1wd3A 311 :MTS T0547 424 :QNPA 1wd3A 315 :YPSD Number of specific fragments extracted= 2 number of extra gaps= 2 total=100419 # 1ak0.419.95 read from T0547.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0547)G421 (1ak0)S98 because G (3-10) conformation "forbidden" or filtered. T0547 419 :LL 1ak0 96 :RV T0547 422 :DKQNPA 1ak0 99 :DSSLSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=100421 # 1yukA.419.23 read from T0547.t06.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)K423 (1yukA)N28 because L (left) conformation "forbidden" or filtered. T0547 419 :LLGD 1yukA 24 :CQKL T0547 424 :QNPA 1yukA 29 :FTGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=100423 # 1ga6A.419.301 read from T0547.t06.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)G421 (1ga6A)N304 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1ga6A)S305 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1ga6A)P311 T0547 419 :LL 1ga6A 302 :SA T0547 423 :KQNP 1ga6A 306 :NSLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=100425 # 1c8nA.419.155 read from T0547.t06.many.frag # found chain 1c8nA in template set Warning: unaligning (T0547)L419 (1c8nA)C156 because Y (epsilon') conformation "forbidden" or filtered. T0547 420 :LGDKQNPA 1c8nA 157 :LSYDRNDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=100426 # 1zj8A.419.316 read from T0547.t06.many.frag # found chain 1zj8A in template set Warning: unaligning (T0547)P426 (1zj8A)K313 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1zj8A)R314 because Y (epsilon') conformation "forbidden" or filtered. T0547 419 :LLGDKQN 1zj8A 306 :VLETEYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=100427 # 1u61A.419.61 read from T0547.t06.many.frag # found chain 1u61A in template set Warning: unaligning (T0547)K423 (1u61A)A63 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1u61A)L65 because P (beta_P) conformation "forbidden" or filtered. T0547 419 :LLGD 1u61A 59 :LLET T0547 424 :Q 1u61A 64 :F T0547 426 :PA 1u61A 66 :TE Number of specific fragments extracted= 3 number of extra gaps= 2 total=100430 # 1u7gA.419.272 read from T0547.t06.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)C276 Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)C276 T0547 419 :LL 1u7gA 273 :TP T0547 423 :KQNPA 1u7gA 277 :GYIGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=100432 # 1gw5A.419.355 read from T0547.t06.many.frag # found chain 1gw5A in template set Warning: unaligning (T0547)G421 (1gw5A)S358 because G (3-10) conformation "forbidden" or filtered. T0547 419 :LL 1gw5A 356 :LA T0547 422 :DKQNPA 1gw5A 359 :SEFSHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100434 # 1odmA.419.258 read from T0547.t06.many.frag # found chain 1odmA in training set Warning: unaligning (T0547)D422 (1odmA)N262 because L (left) conformation "forbidden" or filtered. T0547 419 :LLG 1odmA 259 :HLT T0547 423 :KQNPA 1odmA 263 :NYYKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=100436 # 1gqeA.419.201 read from T0547.t06.many.frag # found chain 1gqeA in template set Warning: unaligning (T0547)G421 (1gqeA)K204 because P (beta_P) conformation "forbidden" or filtered. T0547 419 :LL 1gqeA 202 :VR T0547 422 :DKQNPA 1gqeA 205 :SPFDSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=100438 # 1k47A.419.265 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)G421 (1k47A)S266 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1k47A)T271 because E (beta_S) conformation "forbidden" or filtered. T0547 419 :LL 1k47A 264 :GL T0547 422 :DKQN 1k47A 267 :TDIY T0547 427 :A 1k47A 272 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=100441 # 1tv8A.419.274 read from T0547.t06.many.frag # found chain 1tv8A in template set Warning: unaligning (T0547)N425 (1tv8A)A281 because E (beta_S) conformation "forbidden" or filtered. T0547 419 :LLGDKQ 1tv8A 275 :FYGCLF T0547 426 :PA 1tv8A 282 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=100443 # 1dy5A.419.83 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)D422 (1dy5A)T87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1dy5A)K91 because E (beta_S) conformation "forbidden" or filtered. T0547 419 :LLG 1dy5A 84 :CRE T0547 423 :KQN 1dy5A 88 :GSS T0547 427 :A 1dy5A 92 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=100446 # 1svpA.419.98 read from T0547.t06.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)P426 (1svpA)G211 because Y (epsilon') conformation "forbidden" or filtered. T0547 419 :LLGDKQN 1svpA 204 :TIPRGVG T0547 427 :A 1svpA 212 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=100448 # 2pvbA.419.47 read from T0547.t06.many.frag # found chain 2pvbA in training set Warning: unaligning (T0547)G421 (2pvbA)D51 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2pvbA)G56 because T (delta_L) conformation "forbidden" or filtered. T0547 419 :LL 2pvbA 49 :VI T0547 422 :DKQN 2pvbA 52 :QDKS T0547 427 :A 2pvbA 57 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=100451 # 1wbeA.419.133 read from T0547.t06.many.frag # found chain 1wbeA in training set T0547 419 :LLGDKQNPA 1wbeA 134 :MALKKYHGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=100452 # 1ok7A.419.144 read from T0547.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0547)G421 (1ok7A)A147 because P (beta_P) conformation "forbidden" or filtered. T0547 419 :LL 1ok7A 145 :SM T0547 422 :DKQNPA 1ok7A 148 :HQDVRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=100454 # 2bptA.419.687 read from T0547.t06.many.frag # found chain 2bptA in template set T0547 419 :LLGDKQNPA 2bptA 688 :MISNPNARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=100455 # 2axtB.419.319 read from T0547.t06.many.frag # found chain 2axtB in template set Warning: unaligning (T0547)D422 (2axtB)G323 because Y (epsilon') conformation "forbidden" or filtered. T0547 419 :LLG 2axtB 320 :AKG T0547 423 :KQNPA 2axtB 324 :LFRTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=100457 # 1yleA.419.180 read from T0547.t06.many.frag # found chain 1yleA in training set T0547 419 :LLGDKQNPA 1yleA 179 :AVGRNFFDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100458 1cfb expands to /projects/compbio/data/pdb/1cfb.pdb.gz 1cfb:Warning: there is no chain 1cfb will retry with 1cfbA # 1cfb.419.40 read from T0547.t06.many.frag # adding 1cfb to template set # found chain 1cfb in template set T0547 419 :LLGDKQNPA 1cfb 650 :QFNTSFTPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100459 # 1tq5A.419.117 read from T0547.t06.many.frag # found chain 1tq5A in training set Warning: unaligning (T0547)P426 (1tq5A)G125 because L (left) conformation "forbidden" or filtered. T0547 419 :LLGDKQN 1tq5A 118 :WIMPEEN T0547 427 :A 1tq5A 126 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=100461 # 1ra6A.419.309 read from T0547.t06.many.frag # found chain 1ra6A in template set T0547 419 :LLGDKQNPA 1ra6A 310 :LKTYKGIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100462 # 7odcA.420.392 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)Q424 (7odcA)F397 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. T0547 420 :LGDK 7odcA 393 :AAST T0547 425 :N 7odcA 398 :N T0547 427 :AD 7odcA 400 :FQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=100465 # 1knwA.420.381 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)K423 (1knwA)N385 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1knwA)S388 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1knwA)R389 because E (beta_S) conformation "forbidden" or filtered. T0547 420 :LGD 1knwA 382 :MSS T0547 424 :QN 1knwA 386 :YN T0547 428 :D 1knwA 390 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=100468 # 2aqjA.420.287 read from T0547.t06.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)L420 (2aqjA)F288 because Y (epsilon') conformation "forbidden" or filtered. T0547 421 :GDKQNPAD 2aqjA 289 :SSHFTSRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=100469 # 1nc5A.420.290 read from T0547.t06.many.frag # found chain 1nc5A in training set T0547 420 :LGDKQNPAD 1nc5A 291 :INKGYLDRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100470 # 2ahrA.420.126 read from T0547.t06.many.frag # found chain 2ahrA in template set Warning: unaligning (T0547)L420 (2ahrA)T124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (2ahrA)N126 because P (beta_P) conformation "forbidden" or filtered. T0547 421 :G 2ahrA 125 :G T0547 423 :KQNPAD 2ahrA 127 :ALVSQE Number of specific fragments extracted= 2 number of extra gaps= 2 total=100472 # 1xrsA.420.372 read from T0547.t06.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)G421 (1xrsA)P374 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1xrsA)T379 because E (beta_S) conformation "forbidden" or filtered. T0547 420 :L 1xrsA 373 :P T0547 422 :DKQN 1xrsA 375 :TKFM T0547 427 :AD 1xrsA 380 :GN Number of specific fragments extracted= 3 number of extra gaps= 2 total=100475 # 1ga6A.420.302 read from T0547.t06.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)D422 (1ga6A)S305 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1ga6A)N306 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1ga6A)P311 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1ga6A)P311 T0547 420 :LG 1ga6A 303 :AN T0547 424 :QNP 1ga6A 307 :SLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=100477 # 1wd3A.420.293 read from T0547.t06.many.frag # found chain 1wd3A in training set T0547 420 :LGDKQNPAD 1wd3A 311 :MTSGYPSDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=100478 # 1tv8A.420.275 read from T0547.t06.many.frag # found chain 1tv8A in template set Warning: unaligning (T0547)D422 (1tv8A)C278 because Y (epsilon') conformation "forbidden" or filtered. T0547 420 :LG 1tv8A 276 :YG T0547 423 :KQNPAD 1tv8A 279 :LFATVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=100480 # 1ak0.420.96 read from T0547.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0547)G421 (1ak0)S98 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1ak0)L102 because P (beta_P) conformation "forbidden" or filtered. T0547 420 :L 1ak0 97 :V T0547 422 :DKQ 1ak0 99 :DSS T0547 426 :PAD 1ak0 103 :SSE Number of specific fragments extracted= 3 number of extra gaps= 2 total=100483 # 1u61A.420.62 read from T0547.t06.many.frag # found chain 1u61A in template set Warning: unaligning (T0547)K423 (1u61A)A63 because L (left) conformation "forbidden" or filtered. T0547 420 :LGD 1u61A 60 :LET T0547 424 :QNPAD 1u61A 64 :FLTEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100485 # 1u7gA.420.273 read from T0547.t06.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)C276 Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)C276 Warning: unaligning (T0547)N425 (1u7gA)I279 because E (beta_S) conformation "forbidden" or filtered. T0547 420 :L 1u7gA 274 :P T0547 423 :KQ 1u7gA 277 :GY T0547 426 :PAD 1u7gA 280 :GVG Number of specific fragments extracted= 3 number of extra gaps= 2 total=100488 # 1c8nA.420.156 read from T0547.t06.many.frag # found chain 1c8nA in template set T0547 420 :LGDKQNPAD 1c8nA 157 :LSYDRNDVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100489 # 1yukA.420.24 read from T0547.t06.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)G421 (1yukA)K26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1yukA)N28 because L (left) conformation "forbidden" or filtered. T0547 420 :L 1yukA 25 :Q T0547 422 :D 1yukA 27 :L T0547 424 :QNPAD 1yukA 29 :FTGPG Number of specific fragments extracted= 3 number of extra gaps= 2 total=100492 # 1zj8A.420.317 read from T0547.t06.many.frag # found chain 1zj8A in template set Warning: unaligning (T0547)P426 (1zj8A)K313 because L (left) conformation "forbidden" or filtered. T0547 420 :LGDKQN 1zj8A 307 :LETEYL T0547 427 :AD 1zj8A 314 :RP Number of specific fragments extracted= 2 number of extra gaps= 1 total=100494 # 1k47A.420.266 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)P426 (1k47A)T271 because E (beta_S) conformation "forbidden" or filtered. T0547 420 :LGDKQN 1k47A 265 :LSTDIY T0547 427 :AD 1k47A 272 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=100496 # 1dy5A.420.84 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)P426 (1dy5A)K91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1dy5A)P93 because C (cis) conformation "forbidden" or filtered. T0547 420 :LGDKQN 1dy5A 85 :RETGSS T0547 427 :A 1dy5A 92 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=100498 # 2bptA.420.688 read from T0547.t06.many.frag # found chain 2bptA in template set Warning: unaligning (T0547)D422 (2bptA)N691 because P (beta_P) conformation "forbidden" or filtered. T0547 420 :LG 2bptA 689 :IS T0547 423 :KQNPAD 2bptA 692 :PNARRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100500 # 1svpA.420.99 read from T0547.t06.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)P426 (1svpA)G211 because Y (epsilon') conformation "forbidden" or filtered. T0547 420 :LGDKQN 1svpA 205 :IPRGVG T0547 427 :AD 1svpA 212 :RG Number of specific fragments extracted= 2 number of extra gaps= 1 total=100502 # 1gqeA.420.202 read from T0547.t06.many.frag # found chain 1gqeA in template set T0547 420 :LGDKQNPAD 1gqeA 203 :RKSPFDSGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100503 # 2pvbA.420.48 read from T0547.t06.many.frag # found chain 2pvbA in training set Warning: unaligning (T0547)Q424 (2pvbA)K54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2pvbA)G56 because T (delta_L) conformation "forbidden" or filtered. T0547 420 :LGDK 2pvbA 50 :IDQD T0547 425 :N 2pvbA 55 :S T0547 427 :AD 2pvbA 57 :FI Number of specific fragments extracted= 3 number of extra gaps= 2 total=100506 # 1odmA.420.259 read from T0547.t06.many.frag # found chain 1odmA in training set Warning: unaligning (T0547)G421 (1odmA)T261 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1odmA)N262 because L (left) conformation "forbidden" or filtered. T0547 420 :L 1odmA 260 :L T0547 423 :KQNPAD 1odmA 263 :NYYKAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=100508 # 1gw5A.420.356 read from T0547.t06.many.frag # found chain 1gw5A in template set Warning: unaligning (T0547)G421 (1gw5A)S358 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1gw5A)S359 because E (beta_S) conformation "forbidden" or filtered. T0547 420 :L 1gw5A 357 :A T0547 423 :KQNPAD 1gw5A 360 :EFSHEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=100510 # 2fq3A.420.15 read from T0547.t06.many.frag # found chain 2fq3A in training set Warning: unaligning (T0547)G421 because first residue in template chain is (2fq3A)S311 Warning: unaligning (T0547)A427 (2fq3A)E317 because G (3-10) conformation "forbidden" or filtered. T0547 422 :DKQNP 2fq3A 312 :KWFNL T0547 428 :D 2fq3A 318 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=100512 # 1eteA.420.58 read from T0547.t06.many.frag # found chain 1eteA in template set T0547 420 :LGDKQNPAD 1eteA 59 :RLKTVAGSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100513 # 1cfb.420.41 read from T0547.t06.many.frag # found chain 1cfb in template set T0547 420 :LGDKQNPAD 1cfb 651 :FNTSFTPAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100514 # 1yleA.420.181 read from T0547.t06.many.frag # found chain 1yleA in training set T0547 420 :LGDKQNPAD 1yleA 180 :VGRNFFDLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=100515 # 1ok7A.420.145 read from T0547.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0547)G421 (1ok7A)A147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1ok7A)Q149 because L (left) conformation "forbidden" or filtered. T0547 420 :L 1ok7A 146 :M T0547 422 :D 1ok7A 148 :H T0547 424 :QNPAD 1ok7A 150 :DVRYY Number of specific fragments extracted= 3 number of extra gaps= 2 total=100518 # 1smxA.420.48 read from T0547.t06.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)D422 (1smxA)A80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1smxA)S83 because P (beta_P) conformation "forbidden" or filtered. T0547 420 :LG 1smxA 78 :FP T0547 423 :KQ 1smxA 81 :NY T0547 426 :PAD 1smxA 84 :AHG Number of specific fragments extracted= 3 number of extra gaps= 2 total=100521 # 1t3tA.420.121 read from T0547.t06.many.frag # found chain 1t3tA in template set Warning: unaligning (T0547)G421 (1t3tA)E115 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1t3tA)S117 because N (gamma') conformation "forbidden" or filtered. T0547 420 :L 1t3tA 114 :I T0547 422 :D 1t3tA 116 :A T0547 424 :QNPAD 1t3tA 118 :TLTAE Number of specific fragments extracted= 3 number of extra gaps= 2 total=100524 # 1knwA.421.382 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)G421 (1knwA)S383 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1knwA)S388 because L (left) conformation "forbidden" or filtered. T0547 422 :DKQN 1knwA 384 :SNYN T0547 427 :ADL 1knwA 389 :RPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=100526 # 7odcA.421.393 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P426 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. T0547 421 :GDKQN 7odcA 394 :ASTFN T0547 427 :ADL 7odcA 400 :FQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=100528 # 2aqjA.421.288 read from T0547.t06.many.frag # found chain 2aqjA in training set Warning: unaligning (T0547)G421 (2aqjA)S289 because E (beta_S) conformation "forbidden" or filtered. T0547 422 :DKQNPADL 2aqjA 290 :SHFTSRDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=100529 # 1xrsA.421.373 read from T0547.t06.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)G421 (1xrsA)P374 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1xrsA)T379 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1xrsA)N381 because N (gamma') conformation "forbidden" or filtered. T0547 422 :DKQN 1xrsA 375 :TKFM T0547 427 :A 1xrsA 380 :G T0547 429 :L 1xrsA 382 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=100532 # 2ahrA.421.127 read from T0547.t06.many.frag # found chain 2ahrA in template set Warning: unaligning (T0547)D422 (2ahrA)N126 because P (beta_P) conformation "forbidden" or filtered. T0547 421 :G 2ahrA 125 :G T0547 423 :KQNPADL 2ahrA 127 :ALVSQEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=100534 # 1ga6A.421.303 read from T0547.t06.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)G421 (1ga6A)N304 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1ga6A)S305 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1ga6A)P311 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1ga6A)P311 T0547 423 :KQNP 1ga6A 306 :NSLG T0547 429 :L 1ga6A 312 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=100536 # 1nc5A.421.291 read from T0547.t06.many.frag # found chain 1nc5A in training set T0547 421 :GDKQNPADL 1nc5A 292 :NKGYLDRAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=100537 # 1tv8A.421.276 read from T0547.t06.many.frag # found chain 1tv8A in template set Warning: unaligning (T0547)D422 (1tv8A)C278 because Y (epsilon') conformation "forbidden" or filtered. T0547 421 :G 1tv8A 277 :G T0547 423 :KQNPADL 1tv8A 279 :LFATVDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=100539 # 1u61A.421.63 read from T0547.t06.many.frag # found chain 1u61A in template set Warning: unaligning (T0547)K423 (1u61A)A63 because L (left) conformation "forbidden" or filtered. T0547 421 :GD 1u61A 61 :ET T0547 424 :QNPADL 1u61A 64 :FLTEEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100541 # 1u7gA.421.274 read from T0547.t06.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)G421 because of BadResidue code BAD_PEPTIDE in next template residue (1u7gA)C276 Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)C276 T0547 423 :KQNPADL 1u7gA 277 :GYIGVGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=100542 # 1ak0.421.97 read from T0547.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0547)G421 (1ak0)S98 because G (3-10) conformation "forbidden" or filtered. T0547 422 :DKQNPADL 1ak0 99 :DSSLSSEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=100543 # 1wd3A.421.294 read from T0547.t06.many.frag # found chain 1wd3A in training set T0547 421 :GDKQNPADL 1wd3A 312 :TSGYPSDDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=100544 # 1k47A.421.267 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)P426 (1k47A)T271 because E (beta_S) conformation "forbidden" or filtered. T0547 421 :GDKQN 1k47A 266 :STDIY T0547 427 :ADL 1k47A 272 :PLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=100546 # 1yukA.421.25 read from T0547.t06.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)G421 (1yukA)K26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1yukA)N28 because L (left) conformation "forbidden" or filtered. T0547 422 :D 1yukA 27 :L T0547 424 :QNPADL 1yukA 29 :FTGPGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=100548 # 1eteA.421.59 read from T0547.t06.many.frag # found chain 1eteA in template set T0547 421 :GDKQNPADL 1eteA 60 :LKTVAGSKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=100549 # 1c8nA.421.157 read from T0547.t06.many.frag # found chain 1c8nA in template set Warning: unaligning (T0547)G421 (1c8nA)S158 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1c8nA)N162 because G (3-10) conformation "forbidden" or filtered. T0547 422 :DKQ 1c8nA 159 :YDR T0547 426 :PADL 1c8nA 163 :DVAP Number of specific fragments extracted= 2 number of extra gaps= 2 total=100551 # 1zj8A.421.318 read from T0547.t06.many.frag # found chain 1zj8A in template set Warning: unaligning (T0547)P426 (1zj8A)K313 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1zj8A)P315 because P (beta_P) conformation "forbidden" or filtered. T0547 421 :GDKQN 1zj8A 308 :ETEYL T0547 427 :A 1zj8A 314 :R T0547 429 :L 1zj8A 316 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=100554 # 2fq3A.421.16 read from T0547.t06.many.frag # found chain 2fq3A in training set Warning: unaligning (T0547)G421 because first residue in template chain is (2fq3A)S311 Warning: unaligning (T0547)D428 (2fq3A)K318 because Y (epsilon') conformation "forbidden" or filtered. T0547 422 :DKQNPA 2fq3A 312 :KWFNLE T0547 429 :L 2fq3A 319 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=100556 # 1ucdA.421.92 read from T0547.t06.many.frag # found chain 1ucdA in training set T0547 421 :GDKQNPADL 1ucdA 93 :ESTFNQAAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=100557 # 1qlmA.421.256 read from T0547.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)P426 (1qlmA)G262 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1qlmA)K263 because E (beta_S) conformation "forbidden" or filtered. T0547 421 :GDKQN 1qlmA 257 :ASEDY T0547 428 :DL 1qlmA 264 :PF Number of specific fragments extracted= 2 number of extra gaps= 1 total=100559 # 1cfb.421.42 read from T0547.t06.many.frag # found chain 1cfb in template set T0547 421 :GDKQNPADL 1cfb 652 :NTSFTPASW Number of specific fragments extracted= 1 number of extra gaps= 0 total=100560 # 1yleA.421.182 read from T0547.t06.many.frag # found chain 1yleA in training set T0547 421 :GDKQNPADL 1yleA 181 :GRNFFDLNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=100561 # 1smxA.421.49 read from T0547.t06.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)D422 (1smxA)A80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1smxA)S83 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1smxA)G86 because S (epsilon) conformation "forbidden" or filtered. T0547 421 :G 1smxA 79 :P T0547 423 :KQ 1smxA 81 :NY T0547 426 :PA 1smxA 84 :AH T0547 429 :L 1smxA 87 :R Number of specific fragments extracted= 4 number of extra gaps= 3 total=100565 # 2bptA.421.689 read from T0547.t06.many.frag # found chain 2bptA in template set Warning: unaligning (T0547)D422 (2bptA)N691 because P (beta_P) conformation "forbidden" or filtered. T0547 421 :G 2bptA 690 :S T0547 423 :KQNPADL 2bptA 692 :PNARREL Number of specific fragments extracted= 2 number of extra gaps= 1 total=100567 # 1svpA.421.100 read from T0547.t06.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)K423 (1svpA)G208 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1svpA)G211 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1svpA)G213 because T (delta_L) conformation "forbidden" or filtered. T0547 421 :GD 1svpA 206 :PR T0547 424 :QN 1svpA 209 :VG T0547 427 :A 1svpA 212 :R T0547 429 :L 1svpA 214 :D Number of specific fragments extracted= 4 number of extra gaps= 3 total=100571 # 1njrA.421.217 read from T0547.t06.many.frag # found chain 1njrA in template set Warning: unaligning (T0547)D422 (1njrA)G219 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1njrA)I222 because E (beta_S) conformation "forbidden" or filtered. T0547 421 :G 1njrA 218 :A T0547 423 :KQ 1njrA 220 :DH T0547 426 :PADL 1njrA 223 :SKEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=100574 # 2pvbA.421.49 read from T0547.t06.many.frag # found chain 2pvbA in training set Warning: unaligning (T0547)K423 (2pvbA)D53 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (2pvbA)K54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2pvbA)G56 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (2pvbA)F57 because E (beta_S) conformation "forbidden" or filtered. T0547 421 :GD 2pvbA 51 :DQ T0547 425 :N 2pvbA 55 :S T0547 428 :DL 2pvbA 58 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=100577 # 1gw5A.421.508 read from T0547.t06.many.frag # found chain 1gw5A in template set Warning: unaligning (T0547)G421 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X509 Warning: unaligning (T0547)D422 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X510 Warning: unaligning (T0547)K423 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X511 Warning: unaligning (T0547)Q424 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X512 Warning: unaligning (T0547)N425 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X513 Warning: unaligning (T0547)P426 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X514 Warning: unaligning (T0547)A427 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X515 Warning: unaligning (T0547)D428 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X516 Warning: unaligning (T0547)L429 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X517 Number of specific fragments extracted= 0 number of extra gaps= 1 total=100577 # 1odmA.421.260 read from T0547.t06.many.frag # found chain 1odmA in training set Warning: unaligning (T0547)G421 (1odmA)T261 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1odmA)N262 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1odmA)P268 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQNPA 1odmA 263 :NYYKA T0547 429 :L 1odmA 269 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=100579 # 1ok7A.421.146 read from T0547.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0547)G421 (1ok7A)A147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D422 (1ok7A)H148 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1ok7A)Q149 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1ok7A)D150 because P (beta_P) conformation "forbidden" or filtered. T0547 425 :NPADL 1ok7A 151 :VRYYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=100580 # 1knwA.422.383 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P426 (1knwA)S388 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1knwA)P390 because P (beta_P) conformation "forbidden" or filtered. T0547 422 :DKQN 1knwA 384 :SNYN T0547 427 :A 1knwA 389 :R T0547 429 :LL 1knwA 391 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=100583 # 7odcA.422.394 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P426 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. T0547 422 :DKQN 7odcA 395 :STFN T0547 427 :ADLL 7odcA 400 :FQRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=100585 # 1xrsA.422.374 read from T0547.t06.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)N425 (1xrsA)M378 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1xrsA)T379 because E (beta_S) conformation "forbidden" or filtered. T0547 422 :DKQ 1xrsA 375 :TKF T0547 427 :ADLL 1xrsA 380 :GNIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=100587 # 2aqjA.422.289 read from T0547.t06.many.frag # found chain 2aqjA in training set T0547 422 :DKQNPADLL 2aqjA 290 :SHFTSRDQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100588 # 1ga6A.422.304 read from T0547.t06.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)K423 (1ga6A)N306 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1ga6A)P311 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1ga6A)P311 T0547 422 :D 1ga6A 305 :S T0547 424 :QNP 1ga6A 307 :SLG T0547 429 :LL 1ga6A 312 :AA Number of specific fragments extracted= 3 number of extra gaps= 2 total=100591 # 2ahrA.422.128 read from T0547.t06.many.frag # found chain 2ahrA in template set T0547 422 :DKQNPADLL 2ahrA 126 :NALVSQELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=100592 # 1tv8A.422.277 read from T0547.t06.many.frag # found chain 1tv8A in template set Warning: unaligning (T0547)D422 (1tv8A)C278 because Y (epsilon') conformation "forbidden" or filtered. T0547 423 :KQNPADLL 1tv8A 279 :LFATVDGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=100593 # 1u61A.422.64 read from T0547.t06.many.frag # found chain 1u61A in template set Warning: unaligning (T0547)K423 (1u61A)A63 because L (left) conformation "forbidden" or filtered. T0547 422 :D 1u61A 62 :T T0547 424 :QNPADLL 1u61A 64 :FLTEEEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100595 # 1nc5A.422.292 read from T0547.t06.many.frag # found chain 1nc5A in training set Warning: unaligning (T0547)N425 (1nc5A)L296 because E (beta_S) conformation "forbidden" or filtered. T0547 422 :DKQ 1nc5A 293 :KGY T0547 426 :PADLL 1nc5A 297 :DRAYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100597 # 1k47A.422.268 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)P426 (1k47A)T271 because E (beta_S) conformation "forbidden" or filtered. T0547 422 :DKQN 1k47A 267 :TDIY T0547 427 :ADLL 1k47A 272 :PLLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=100599 # 1qlmA.422.257 read from T0547.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)D422 (1qlmA)S258 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1qlmA)G262 because T (delta_L) conformation "forbidden" or filtered. T0547 423 :KQN 1qlmA 259 :EDY T0547 427 :ADLL 1qlmA 263 :KPFM Number of specific fragments extracted= 2 number of extra gaps= 2 total=100601 # 1u7gA.422.275 read from T0547.t06.many.frag # found chain 1u7gA in training set Warning: unaligning (T0547)D422 because of BadResidue code BAD_PEPTIDE at template residue (1u7gA)C276 T0547 423 :KQNPADLL 1u7gA 277 :GYIGVGGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=100602 # 1ak0.422.98 read from T0547.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0547)N425 (1ak0)L102 because P (beta_P) conformation "forbidden" or filtered. T0547 422 :DKQ 1ak0 99 :DSS T0547 426 :PADLL 1ak0 103 :SSENH Number of specific fragments extracted= 2 number of extra gaps= 1 total=100604 # 2fq3A.422.17 read from T0547.t06.many.frag # found chain 2fq3A in training set Warning: unaligning (T0547)D428 (2fq3A)K318 because Y (epsilon') conformation "forbidden" or filtered. T0547 422 :DKQNPA 2fq3A 312 :KWFNLE T0547 429 :LL 2fq3A 319 :IH Number of specific fragments extracted= 2 number of extra gaps= 1 total=100606 # 1yukA.422.26 read from T0547.t06.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)N425 (1yukA)T30 because P (beta_P) conformation "forbidden" or filtered. T0547 422 :DKQ 1yukA 27 :LNF T0547 426 :PADLL 1yukA 31 :GPGDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=100608 # 1zj8A.422.319 read from T0547.t06.many.frag # found chain 1zj8A in template set Warning: unaligning (T0547)P426 (1zj8A)K313 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1zj8A)R314 because Y (epsilon') conformation "forbidden" or filtered. T0547 422 :DKQN 1zj8A 309 :TEYL T0547 428 :DLL 1zj8A 315 :PLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=100610 # 1smxA.422.50 read from T0547.t06.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)D422 (1smxA)A80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K423 (1smxA)N81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1smxA)S83 because P (beta_P) conformation "forbidden" or filtered. T0547 424 :Q 1smxA 82 :Y T0547 426 :PADLL 1smxA 84 :AHGRP Number of specific fragments extracted= 2 number of extra gaps= 2 total=100612 # 1eteA.422.60 read from T0547.t06.many.frag # found chain 1eteA in template set T0547 422 :DKQNPADLL 1eteA 61 :KTVAGSKMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=100613 # 2bptA.422.690 read from T0547.t06.many.frag # found chain 2bptA in template set T0547 422 :DKQNPADLL 2bptA 691 :NPNARRELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100614 # 1c8nA.422.158 read from T0547.t06.many.frag # found chain 1c8nA in template set T0547 422 :DKQNPADLL 1c8nA 159 :YDRNDVAPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100615 # 1ucdA.422.93 read from T0547.t06.many.frag # found chain 1ucdA in training set T0547 422 :DKQNPADLL 1ucdA 94 :STFNQAAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=100616 # 1yleA.422.183 read from T0547.t06.many.frag # found chain 1yleA in training set Warning: unaligning (T0547)D428 (1yleA)N188 because P (beta_P) conformation "forbidden" or filtered. T0547 422 :DKQNPA 1yleA 182 :RNFFDL T0547 429 :LL 1yleA 189 :YI Number of specific fragments extracted= 2 number of extra gaps= 1 total=100618 # 1cfb.422.43 read from T0547.t06.many.frag # found chain 1cfb in template set T0547 422 :DKQNPADLL 1cfb 653 :TSFTPASWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=100619 # 1njrA.422.218 read from T0547.t06.many.frag # found chain 1njrA in template set T0547 422 :DKQNPADLL 1njrA 219 :GDHISKELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100620 # 1wd3A.422.295 read from T0547.t06.many.frag # found chain 1wd3A in training set Warning: unaligning (T0547)K423 (1wd3A)G314 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N425 (1wd3A)P316 because P (beta_P) conformation "forbidden" or filtered. T0547 422 :D 1wd3A 313 :S T0547 424 :Q 1wd3A 315 :Y T0547 426 :PADLL 1wd3A 317 :SDDTE Number of specific fragments extracted= 3 number of extra gaps= 2 total=100623 2au5A expands to /projects/compbio/data/pdb/2au5.pdb.gz 2au5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 15, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 17, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 19, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 21, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 23, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 25, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 27, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 29, because occupancy 0.500 <= existing 0.500 in 2au5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 379, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 381, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 383, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 385, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 387, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 389, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 391, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 393, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 395, because occupancy 0.500 <= existing 0.500 in 2au5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 569, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 577, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 581, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 585, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 625, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 627, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 629, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 631, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 633, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 635, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 637, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 639, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 641, because occupancy 0.500 <= existing 0.500 in 2au5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2au5A.422.39 read from T0547.t06.many.frag # adding 2au5A to template set # found chain 2au5A in template set T0547 422 :DKQNPADLL 2au5A 37 :ISHFSPIVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100624 # 1v70A.422.9 read from T0547.t06.many.frag # found chain 1v70A in training set Warning: unaligning (T0547)K423 (1v70A)R11 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q424 (1v70A)Y12 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1v70A)K16 because Y (epsilon') conformation "forbidden" or filtered. T0547 422 :D 1v70A 10 :A T0547 425 :NPA 1v70A 13 :NPE T0547 429 :LL 1v70A 17 :MA Number of specific fragments extracted= 3 number of extra gaps= 2 total=100627 # 1gw5A.422.509 read from T0547.t06.many.frag # found chain 1gw5A in template set Warning: unaligning (T0547)D422 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X510 Warning: unaligning (T0547)K423 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X511 Warning: unaligning (T0547)Q424 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X512 Warning: unaligning (T0547)N425 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X513 Warning: unaligning (T0547)P426 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X514 Warning: unaligning (T0547)A427 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X515 Warning: unaligning (T0547)D428 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X516 Warning: unaligning (T0547)L429 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X517 Warning: unaligning (T0547)L430 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X518 Number of specific fragments extracted= 0 number of extra gaps= 1 total=100627 # 1dlwA.422.30 read from T0547.t06.many.frag # found chain 1dlwA in training set Warning: unaligning (T0547)P426 (1dlwA)G35 because T (delta_L) conformation "forbidden" or filtered. T0547 422 :DKQN 1dlwA 31 :TFFN T0547 427 :ADLL 1dlwA 36 :IDMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=100629 # 2pvbA.422.50 read from T0547.t06.many.frag # found chain 2pvbA in training set Warning: unaligning (T0547)Q424 (2pvbA)K54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (2pvbA)G56 because T (delta_L) conformation "forbidden" or filtered. T0547 422 :DK 2pvbA 52 :QD T0547 425 :N 2pvbA 55 :S T0547 427 :ADLL 2pvbA 57 :FIEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=100632 # 1knwA.423.384 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P426 (1knwA)S388 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1knwA)P390 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQN 1knwA 385 :NYN T0547 427 :A 1knwA 389 :R T0547 429 :LLA 1knwA 391 :LLP Number of specific fragments extracted= 3 number of extra gaps= 2 total=100635 # 7odcA.423.395 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)K423 (7odcA)T396 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A431 (7odcA)N404 because P (beta_P) conformation "forbidden" or filtered. T0547 424 :QN 7odcA 397 :FN T0547 427 :ADLL 7odcA 400 :FQRP Number of specific fragments extracted= 2 number of extra gaps= 3 total=100637 # 1xrsA.423.375 read from T0547.t06.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)P426 (1xrsA)T379 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1xrsA)N381 because N (gamma') conformation "forbidden" or filtered. T0547 423 :KQN 1xrsA 376 :KFM T0547 427 :A 1xrsA 380 :G T0547 429 :LLA 1xrsA 382 :IFK Number of specific fragments extracted= 3 number of extra gaps= 2 total=100640 # 1ga6A.423.305 read from T0547.t06.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)K423 (1ga6A)N306 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1ga6A)P311 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1ga6A)P311 T0547 424 :QNP 1ga6A 307 :SLG T0547 429 :LLA 1ga6A 312 :AAS Number of specific fragments extracted= 2 number of extra gaps= 2 total=100642 # 2ahrA.423.129 read from T0547.t06.many.frag # found chain 2ahrA in template set T0547 423 :KQNPADLLA 2ahrA 127 :ALVSQELQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100643 # 1tv8A.423.278 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 423 :KQNPADLLA 1tv8A 279 :LFATVDGFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=100644 # 1u61A.423.65 read from T0547.t06.many.frag # found chain 1u61A in template set Warning: unaligning (T0547)K423 (1u61A)A63 because L (left) conformation "forbidden" or filtered. T0547 424 :QNPADLLA 1u61A 64 :FLTEEEEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=100645 # 1qlmA.423.258 read from T0547.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)P426 (1qlmA)G262 because T (delta_L) conformation "forbidden" or filtered. T0547 423 :KQN 1qlmA 259 :EDY T0547 427 :ADLLA 1qlmA 263 :KPFMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=100647 # 2aqjA.423.290 read from T0547.t06.many.frag # found chain 2aqjA in training set T0547 423 :KQNPADLLA 2aqjA 291 :HFTSRDQAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=100648 # 1k47A.423.269 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)P426 (1k47A)T271 because E (beta_S) conformation "forbidden" or filtered. T0547 423 :KQN 1k47A 268 :DIY T0547 427 :ADLLA 1k47A 272 :PLLRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=100650 # 1nc5A.423.293 read from T0547.t06.many.frag # found chain 1nc5A in training set T0547 423 :KQNPADLLA 1nc5A 294 :GYLDRAYET Number of specific fragments extracted= 1 number of extra gaps= 0 total=100651 # 1smxA.423.51 read from T0547.t06.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)K423 (1smxA)N81 because P (beta_P) conformation "forbidden" or filtered. T0547 424 :QNPADLLA 1smxA 82 :YSAHGRPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=100652 # 2bptA.423.691 read from T0547.t06.many.frag # found chain 2bptA in template set T0547 423 :KQNPADLLA 2bptA 692 :PNARRELKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=100653 # 1eteA.423.61 read from T0547.t06.many.frag # found chain 1eteA in template set T0547 423 :KQNPADLLA 1eteA 62 :TVAGSKMQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100654 # 2fq3A.423.18 read from T0547.t06.many.frag # found chain 2fq3A in training set Warning: unaligning (T0547)D428 (2fq3A)K318 because Y (epsilon') conformation "forbidden" or filtered. T0547 423 :KQNPA 2fq3A 313 :WFNLE T0547 429 :LLA 2fq3A 319 :IHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=100656 # 1v70A.423.10 read from T0547.t06.many.frag # found chain 1v70A in training set Warning: unaligning (T0547)K423 (1v70A)R11 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1v70A)K16 because Y (epsilon') conformation "forbidden" or filtered. T0547 424 :QNPA 1v70A 12 :YNPE T0547 429 :LLA 1v70A 17 :MAK Number of specific fragments extracted= 2 number of extra gaps= 2 total=100658 # 1ak0.423.99 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 423 :KQNPADLLA 1ak0 100 :SSLSSENHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100659 # 2au5A.423.40 read from T0547.t06.many.frag # found chain 2au5A in template set Warning: unaligning (T0547)N425 (2au5A)F40 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQ 2au5A 38 :SH T0547 426 :PADLLA 2au5A 41 :SPIVLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=100661 # 1tl9A.423.178 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)P426 (1tl9A)G207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1tl9A)G208 because Y (epsilon') conformation "forbidden" or filtered. T0547 423 :KQN 1tl9A 204 :ALS T0547 428 :DLLA 1tl9A 209 :CTSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100663 # 1tl2A.423.162 read from T0547.t06.many.frag # found chain 1tl2A in template set Warning: unaligning (T0547)Q424 (1tl2A)S164 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1tl2A)Q166 because G (3-10) conformation "forbidden" or filtered. T0547 423 :K 1tl2A 163 :V T0547 425 :N 1tl2A 165 :N T0547 427 :ADLLA 1tl2A 167 :DNWLA Number of specific fragments extracted= 3 number of extra gaps= 2 total=100666 # 1zj8A.423.320 read from T0547.t06.many.frag # found chain 1zj8A in template set Warning: unaligning (T0547)P426 (1zj8A)K313 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1zj8A)R314 because Y (epsilon') conformation "forbidden" or filtered. T0547 423 :KQN 1zj8A 310 :EYL T0547 428 :DLLA 1zj8A 315 :PLID Number of specific fragments extracted= 2 number of extra gaps= 1 total=100668 # 1c8nA.423.159 read from T0547.t06.many.frag # found chain 1c8nA in template set Warning: unaligning (T0547)N425 (1c8nA)N162 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A431 (1c8nA)S168 because Y (epsilon') conformation "forbidden" or filtered. T0547 423 :KQ 1c8nA 160 :DR T0547 426 :PADLL 1c8nA 163 :DVAPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=100670 # 1yleA.423.184 read from T0547.t06.many.frag # found chain 1yleA in training set Warning: unaligning (T0547)D428 (1yleA)N188 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQNPA 1yleA 183 :NFFDL T0547 429 :LLA 1yleA 189 :YIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100672 # 1e4cP.423.129 read from T0547.t06.many.frag # found chain 1e4cP in training set T0547 423 :KQNPADLLA 1e4cP 130 :TFGTRELSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100673 # 1yukA.423.27 read from T0547.t06.many.frag # found chain 1yukA in training set Warning: unaligning (T0547)K423 (1yukA)N28 because L (left) conformation "forbidden" or filtered. T0547 424 :QNPADLLA 1yukA 29 :FTGPGDPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=100674 # 1u8xX.423.302 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)P426 (1u8xX)H283 because D (zeta) conformation "forbidden" or filtered. T0547 423 :KQN 1u8xX 280 :NPN T0547 427 :ADLLA 1u8xX 284 :TRANE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100676 # 1u7gA.423.276 read from T0547.t06.many.frag # found chain 1u7gA in training set T0547 423 :KQNPADLLA 1u7gA 277 :GYIGVGGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100677 # 1cfb.423.44 read from T0547.t06.many.frag # found chain 1cfb in template set Warning: unaligning (T0547)D428 (1cfb)S659 because E (beta_S) conformation "forbidden" or filtered. T0547 423 :KQNPA 1cfb 654 :SFTPA T0547 429 :LLA 1cfb 660 :WDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=100679 # 1e5kA.423.102 read from T0547.t06.many.frag # found chain 1e5kA in training set T0547 423 :KQNPADLLA 1e5kA 103 :PYIPPDLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100680 # 1l3lA.423.91 read from T0547.t06.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)N425 (1l3lA)L94 because P (beta_P) conformation "forbidden" or filtered. T0547 423 :KQ 1l3lA 92 :PT T0547 426 :PADLLA 1l3lA 95 :SKDERA Number of specific fragments extracted= 2 number of extra gaps= 1 total=100682 # 1knwA.424.385 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N425 (1knwA)N387 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1knwA)S388 because L (left) conformation "forbidden" or filtered. T0547 424 :Q 1knwA 386 :Y T0547 427 :ADLLAI 1knwA 389 :RPLLPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100684 # 7odcA.424.396 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P426 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. T0547 424 :QN 7odcA 397 :FN T0547 427 :ADLLAI 7odcA 400 :FQRPNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=100686 # 1xrsA.424.376 read from T0547.t06.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)N425 (1xrsA)M378 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1xrsA)T379 because E (beta_S) conformation "forbidden" or filtered. T0547 424 :Q 1xrsA 377 :F T0547 427 :ADLLAI 1xrsA 380 :GNIFKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=100688 # 1u61A.424.66 read from T0547.t06.many.frag # found chain 1u61A in template set T0547 424 :QNPADLLAI 1u61A 64 :FLTEEEEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100689 # 1tv8A.424.279 read from T0547.t06.many.frag # found chain 1tv8A in template set Warning: unaligning (T0547)A427 (1tv8A)V283 because E (beta_S) conformation "forbidden" or filtered. T0547 424 :QNP 1tv8A 280 :FAT T0547 428 :DLLAI 1tv8A 284 :DGFNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=100691 # 1qlmA.424.259 read from T0547.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)P426 (1qlmA)G262 because T (delta_L) conformation "forbidden" or filtered. T0547 424 :QN 1qlmA 260 :DY T0547 427 :ADLLAI 1qlmA 263 :KPFMKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=100693 # 1ga6A.424.306 read from T0547.t06.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1ga6A)P311 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1ga6A)P311 T0547 424 :QNP 1ga6A 307 :SLG T0547 429 :LLAI 1ga6A 312 :AASF Number of specific fragments extracted= 2 number of extra gaps= 1 total=100695 # 2ahrA.424.130 read from T0547.t06.many.frag # found chain 2ahrA in template set T0547 424 :QNPADLLAI 2ahrA 128 :LVSQELQAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=100696 # 1nc5A.424.294 read from T0547.t06.many.frag # found chain 1nc5A in training set T0547 424 :QNPADLLAI 1nc5A 295 :YLDRAYETT Number of specific fragments extracted= 1 number of extra gaps= 0 total=100697 # 1tl9A.424.179 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)P426 (1tl9A)G207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1tl9A)G208 because Y (epsilon') conformation "forbidden" or filtered. T0547 424 :QN 1tl9A 205 :LS T0547 428 :DLLAI 1tl9A 209 :CTSEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=100699 # 2au5A.424.41 read from T0547.t06.many.frag # found chain 2au5A in template set T0547 424 :QNPADLLAI 2au5A 39 :HFSPIVLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100700 # 1v70A.424.11 read from T0547.t06.many.frag # found chain 1v70A in training set Warning: unaligning (T0547)D428 (1v70A)K16 because Y (epsilon') conformation "forbidden" or filtered. T0547 424 :QNPA 1v70A 12 :YNPE T0547 429 :LLAI 1v70A 17 :MAKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=100702 # 1k47A.424.270 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)P426 (1k47A)T271 because E (beta_S) conformation "forbidden" or filtered. T0547 424 :QN 1k47A 269 :IY T0547 427 :ADLLAI 1k47A 272 :PLLRQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=100704 # 1eteA.424.62 read from T0547.t06.many.frag # found chain 1eteA in template set T0547 424 :QNPADLLAI 1eteA 63 :VAGSKMQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100705 # 1smxA.424.52 read from T0547.t06.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)Q424 (1smxA)Y82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1smxA)G86 because S (epsilon) conformation "forbidden" or filtered. T0547 425 :NPA 1smxA 83 :SAH T0547 429 :LLAI 1smxA 87 :RPNI Number of specific fragments extracted= 2 number of extra gaps= 2 total=100707 # 1tl2A.424.163 read from T0547.t06.many.frag # found chain 1tl2A in template set Warning: unaligning (T0547)Q424 (1tl2A)S164 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1tl2A)Q166 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1tl2A)N168 because N (gamma') conformation "forbidden" or filtered. T0547 425 :N 1tl2A 165 :N T0547 427 :A 1tl2A 167 :D T0547 429 :LLAI 1tl2A 169 :WLAR Number of specific fragments extracted= 3 number of extra gaps= 3 total=100710 # 2fq3A.424.19 read from T0547.t06.many.frag # found chain 2fq3A in training set Warning: unaligning (T0547)D428 (2fq3A)K318 because Y (epsilon') conformation "forbidden" or filtered. T0547 424 :QNPA 2fq3A 314 :FNLE T0547 429 :LLAI 2fq3A 319 :IHSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=100712 # 2bptA.424.692 read from T0547.t06.many.frag # found chain 2bptA in template set T0547 424 :QNPADLLAI 2bptA 693 :NARRELKPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100713 # 1pb7A.424.200 read from T0547.t06.many.frag # found chain 1pb7A in training set Warning: unaligning (T0547)D428 (1pb7A)S205 because Y (epsilon') conformation "forbidden" or filtered. T0547 424 :QNPA 1pb7A 201 :HNYE T0547 429 :LLAI 1pb7A 206 :AAEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=100715 # 1l3lA.424.92 read from T0547.t06.many.frag # found chain 1l3lA in training set Warning: unaligning (T0547)N425 (1l3lA)L94 because P (beta_P) conformation "forbidden" or filtered. T0547 424 :Q 1l3lA 93 :T T0547 426 :PADLLAI 1l3lA 95 :SKDERAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=100717 # 1zd0A.424.68 read from T0547.t06.many.frag # found chain 1zd0A in training set Warning: unaligning (T0547)Q424 (1zd0A)S68 because P (beta_P) conformation "forbidden" or filtered. T0547 425 :NPADLLAI 1zd0A 69 :IAKTVPGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=100718 # 1u8xX.424.303 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)P426 (1u8xX)H283 because D (zeta) conformation "forbidden" or filtered. T0547 424 :QN 1u8xX 281 :PN T0547 427 :ADLLAI 1u8xX 284 :TRANEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=100720 # 1rq2A.424.205 read from T0547.t06.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)A427 (1rq2A)V206 because D (zeta) conformation "forbidden" or filtered. T0547 424 :QNP 1rq2A 203 :LIN T0547 428 :DLLAI 1rq2A 207 :DFADV Number of specific fragments extracted= 2 number of extra gaps= 1 total=100722 # 1mtyD.424.458 read from T0547.t06.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)P426 (1mtyD)G475 because T (delta_L) conformation "forbidden" or filtered. T0547 424 :QN 1mtyD 473 :YE T0547 427 :ADLLAI 1mtyD 476 :RELSEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=100724 # 1l8aA.424.779 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 424 :QNPADLLAI 1l8aA 780 :LETPRVPYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=100725 # 1yqyA.424.451 read from T0547.t06.many.frag # found chain 1yqyA in template set T0547 424 :QNPADLLAI 1yqyA 709 :TNSKKFIDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=100726 # 1jsdA.424.147 read from T0547.t06.many.frag # found chain 1jsdA in training set Warning: unaligning (T0547)Q424 (1jsdA)N148 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1jsdA)A150 because E (beta_S) conformation "forbidden" or filtered. T0547 425 :N 1jsdA 149 :N T0547 427 :ADLLAI 1jsdA 151 :YPIQDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=100728 # 1e4cP.424.130 read from T0547.t06.many.frag # found chain 1e4cP in training set Warning: unaligning (T0547)N425 (1e4cP)G132 because T (delta_L) conformation "forbidden" or filtered. T0547 424 :Q 1e4cP 131 :F T0547 426 :PADLLAI 1e4cP 133 :TRELSEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=100730 # 1ak0.424.100 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 424 :QNPADLLAI 1ak0 101 :SLSSENHAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100731 # 2aqjA.424.291 read from T0547.t06.many.frag # found chain 2aqjA in training set T0547 424 :QNPADLLAI 2aqjA 292 :FTSRDQATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100732 # 1knwA.425.386 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N425 (1knwA)N387 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P426 (1knwA)S388 because L (left) conformation "forbidden" or filtered. T0547 427 :ADLLAIQ 1knwA 389 :RPLLPEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=100733 # 1tv8A.425.280 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 425 :NPADLLAIQ 1tv8A 281 :ATVDGFNVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100734 # 7odcA.425.397 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P426 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. T0547 425 :N 7odcA 398 :N T0547 427 :ADLLAIQ 7odcA 400 :FQRPNIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=100736 # 1qlmA.425.260 read from T0547.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)P426 (1qlmA)G262 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1qlmA)K263 because E (beta_S) conformation "forbidden" or filtered. T0547 425 :N 1qlmA 261 :Y T0547 428 :DLLAIQ 1qlmA 264 :PFMKIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=100738 # 1xrsA.425.377 read from T0547.t06.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)P426 (1xrsA)T379 because E (beta_S) conformation "forbidden" or filtered. T0547 425 :N 1xrsA 378 :M T0547 427 :ADLLAIQ 1xrsA 380 :GNIFKGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=100740 # 1tl9A.425.180 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)P426 (1tl9A)G207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1tl9A)G208 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1tl9A)C209 because E (beta_S) conformation "forbidden" or filtered. T0547 425 :N 1tl9A 206 :S T0547 429 :LLAIQ 1tl9A 210 :TSEAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=100742 # 1v70A.425.12 read from T0547.t06.many.frag # found chain 1v70A in training set Warning: unaligning (T0547)D428 (1v70A)K16 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q433 (1v70A)P21 because P (beta_P) conformation "forbidden" or filtered. T0547 425 :NPA 1v70A 13 :NPE T0547 429 :LLAI 1v70A 17 :MAKI Number of specific fragments extracted= 2 number of extra gaps= 2 total=100744 # 1u61A.425.67 read from T0547.t06.many.frag # found chain 1u61A in template set Warning: unaligning (T0547)N425 (1u61A)L65 because P (beta_P) conformation "forbidden" or filtered. T0547 426 :PADLLAIQ 1u61A 66 :TEEEEAVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=100745 # 1ga6A.425.307 read from T0547.t06.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1ga6A)P311 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1ga6A)P311 T0547 425 :NP 1ga6A 308 :LG T0547 429 :LLAIQ 1ga6A 312 :AASFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=100747 # 1smxA.425.53 read from T0547.t06.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)D428 (1smxA)G86 because S (epsilon) conformation "forbidden" or filtered. T0547 425 :NPA 1smxA 83 :SAH T0547 429 :LLAIQ 1smxA 87 :RPNIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=100749 # 1l8aA.425.780 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 425 :NPADLLAIQ 1l8aA 781 :ETPRVPYIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100750 1jfiA expands to /projects/compbio/data/pdb/1jfi.pdb.gz 1jfiA:# 1jfiA.425.9 read from T0547.t06.many.frag # adding 1jfiA to template set # found chain 1jfiA in template set Warning: unaligning (T0547)N425 because first residue in template chain is (1jfiA)A10 T0547 426 :PADLLAIQ 1jfiA 11 :RFPPARIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100751 # 1mtyD.425.459 read from T0547.t06.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)P426 (1mtyD)G475 because T (delta_L) conformation "forbidden" or filtered. T0547 425 :N 1mtyD 474 :E T0547 427 :ADLLAIQ 1mtyD 476 :RELSEVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=100753 # 1pb7A.425.201 read from T0547.t06.many.frag # found chain 1pb7A in training set Warning: unaligning (T0547)D428 (1pb7A)S205 because Y (epsilon') conformation "forbidden" or filtered. T0547 425 :NPA 1pb7A 202 :NYE T0547 429 :LLAIQ 1pb7A 206 :AAEAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=100755 # 1rq2A.425.206 read from T0547.t06.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)A427 (1rq2A)V206 because D (zeta) conformation "forbidden" or filtered. T0547 425 :NP 1rq2A 204 :IN T0547 428 :DLLAIQ 1rq2A 207 :DFADVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=100757 # 2fq3A.425.20 read from T0547.t06.many.frag # found chain 2fq3A in training set T0547 425 :NPADLLAIQ 2fq3A 315 :NLEKIHSIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100758 # 1u8xX.425.304 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)P426 (1u8xX)H283 because D (zeta) conformation "forbidden" or filtered. T0547 425 :N 1u8xX 282 :N T0547 427 :ADLLAIQ 1u8xX 284 :TRANEVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=100760 # 1zd0A.425.69 read from T0547.t06.many.frag # found chain 1zd0A in training set T0547 425 :NPADLLAIQ 1zd0A 69 :IAKTVPGEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=100761 # 2ahrA.425.131 read from T0547.t06.many.frag # found chain 2ahrA in template set T0547 425 :NPADLLAIQ 2ahrA 129 :VSQELQARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100762 # 1yqyA.425.452 read from T0547.t06.many.frag # found chain 1yqyA in template set T0547 425 :NPADLLAIQ 1yqyA 710 :NSKKFIDIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=100763 # 1eteA.425.63 read from T0547.t06.many.frag # found chain 1eteA in template set Warning: unaligning (T0547)N425 (1eteA)A64 because P (beta_P) conformation "forbidden" or filtered. T0547 426 :PADLLAIQ 1eteA 65 :GSKMQGLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=100764 # 1tl2A.425.164 read from T0547.t06.many.frag # found chain 1tl2A in template set Warning: unaligning (T0547)P426 (1tl2A)Q166 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1tl2A)D167 because P (beta_P) conformation "forbidden" or filtered. T0547 425 :N 1tl2A 165 :N T0547 428 :DLLAIQ 1tl2A 168 :NWLARA Number of specific fragments extracted= 2 number of extra gaps= 1 total=100766 # 1k47A.425.271 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)P426 (1k47A)T271 because E (beta_S) conformation "forbidden" or filtered. T0547 425 :N 1k47A 270 :Y T0547 427 :ADLLAIQ 1k47A 272 :PLLRQLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=100768 # 1nc5A.425.295 read from T0547.t06.many.frag # found chain 1nc5A in training set T0547 425 :NPADLLAIQ 1nc5A 296 :LDRAYETTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100769 # 1l3lA.425.93 read from T0547.t06.many.frag # found chain 1l3lA in training set T0547 425 :NPADLLAIQ 1l3lA 94 :LSKDERAFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=100770 # 1jsdA.425.148 read from T0547.t06.many.frag # found chain 1jsdA in training set Warning: unaligning (T0547)P426 (1jsdA)A150 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A431 (1jsdA)D155 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q433 (1jsdA)Q157 because E (beta_S) conformation "forbidden" or filtered. T0547 425 :N 1jsdA 149 :N T0547 427 :ADLL 1jsdA 151 :YPIQ T0547 432 :I 1jsdA 156 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=100773 # 1c8nA.425.161 read from T0547.t06.many.frag # found chain 1c8nA in template set T0547 425 :NPADLLAIQ 1c8nA 162 :NDVAPGSRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100774 # 1e5kA.425.104 read from T0547.t06.many.frag # found chain 1e5kA in training set Warning: unaligning (T0547)A427 (1e5kA)P107 because G (3-10) conformation "forbidden" or filtered. T0547 425 :NP 1e5kA 105 :IP T0547 428 :DLLAIQ 1e5kA 108 :DLAARL Number of specific fragments extracted= 2 number of extra gaps= 1 total=100776 # 1e4cP.425.131 read from T0547.t06.many.frag # found chain 1e4cP in training set T0547 425 :NPADLLAIQ 1e4cP 132 :GTRELSEHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100777 # 2bptA.425.693 read from T0547.t06.many.frag # found chain 2bptA in template set T0547 425 :NPADLLAIQ 2bptA 694 :ARRELKPAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100778 # 1tv8A.426.281 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 426 :PADLLAIQD 1tv8A 282 :TVDGFNVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100779 # 1v70A.426.13 read from T0547.t06.many.frag # found chain 1v70A in training set T0547 426 :PADLLAIQD 1v70A 14 :PEKMAKIPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100780 # 1knwA.426.387 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)P426 (1knwA)S388 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1knwA)P390 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q433 (1knwA)V395 because E (beta_S) conformation "forbidden" or filtered. T0547 427 :A 1knwA 389 :R T0547 429 :LLAI 1knwA 391 :LLPE T0547 434 :D 1knwA 396 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=100783 # 1tl9A.426.181 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)P426 (1tl9A)G207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1tl9A)C209 because E (beta_S) conformation "forbidden" or filtered. T0547 427 :A 1tl9A 208 :G T0547 429 :LLAIQD 1tl9A 210 :TSEAFE Number of specific fragments extracted= 2 number of extra gaps= 2 total=100785 # 1smxA.426.54 read from T0547.t06.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)D428 (1smxA)G86 because S (epsilon) conformation "forbidden" or filtered. T0547 426 :PA 1smxA 84 :AH T0547 429 :LLAIQD 1smxA 87 :RPNIKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=100787 # 1qlmA.426.261 read from T0547.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)P426 (1qlmA)G262 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A427 (1qlmA)K263 because E (beta_S) conformation "forbidden" or filtered. T0547 428 :DLLAIQD 1qlmA 264 :PFMKIFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=100788 # 1jfiA.426.10 read from T0547.t06.many.frag # found chain 1jfiA in template set Warning: unaligning (T0547)A427 (1jfiA)F12 because E (beta_S) conformation "forbidden" or filtered. T0547 426 :P 1jfiA 11 :R T0547 428 :DLLAIQD 1jfiA 13 :PPARIKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=100790 # 1xrsA.426.378 read from T0547.t06.many.frag # found chain 1xrsA in template set Warning: unaligning (T0547)P426 (1xrsA)T379 because E (beta_S) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 1xrsA 380 :GNIFKGHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=100791 # 1pb7A.426.202 read from T0547.t06.many.frag # found chain 1pb7A in training set Warning: unaligning (T0547)D428 (1pb7A)S205 because Y (epsilon') conformation "forbidden" or filtered. T0547 426 :PA 1pb7A 203 :YE T0547 429 :LLAIQD 1pb7A 206 :AAEAIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=100793 # 1l8aA.426.781 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 426 :PADLLAIQD 1l8aA 782 :TPRVPYIAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=100794 # 1yqyA.426.453 read from T0547.t06.many.frag # found chain 1yqyA in template set T0547 426 :PADLLAIQD 1yqyA 711 :SKKFIDIFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100795 # 1mtyD.426.460 read from T0547.t06.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)P426 (1mtyD)G475 because T (delta_L) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 1mtyD 476 :RELSEVIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=100796 # 1u61A.426.68 read from T0547.t06.many.frag # found chain 1u61A in template set T0547 426 :PADLLAIQD 1u61A 66 :TEEEEAVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=100797 # 1zd0A.426.70 read from T0547.t06.many.frag # found chain 1zd0A in training set T0547 426 :PADLLAIQD 1zd0A 70 :AKTVPGEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100798 # 7odcA.426.398 read from T0547.t06.many.frag # found chain 7odcA in training set Warning: unaligning (T0547)P426 (7odcA)G399 because T (delta_L) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 7odcA 400 :FQRPNIYY Number of specific fragments extracted= 1 number of extra gaps= 1 total=100799 # 1cczA.426.19 read from T0547.t06.many.frag # found chain 1cczA in training set T0547 426 :PADLLAIQD 1cczA 20 :NVPLKEVLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=100800 # 2fq3A.426.21 read from T0547.t06.many.frag # found chain 2fq3A in training set Warning: unaligning (T0547)A427 (2fq3A)E317 because G (3-10) conformation "forbidden" or filtered. T0547 426 :P 2fq3A 316 :L T0547 428 :DLLAIQD 2fq3A 318 :KIHSIEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=100802 # 1rq2A.426.207 read from T0547.t06.many.frag # found chain 1rq2A in template set T0547 426 :PADLLAIQD 1rq2A 205 :NVDFADVKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100803 # 1ospO.426.31 read from T0547.t06.many.frag # found chain 1ospO in template set Warning: unaligning (T0547)D428 (1ospO)G50 because L (left) conformation "forbidden" or filtered. T0547 426 :PA 1ospO 48 :KD T0547 429 :LLAIQD 1ospO 51 :KYDLIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=100805 # 1e4cP.426.132 read from T0547.t06.many.frag # found chain 1e4cP in training set T0547 426 :PADLLAIQD 1e4cP 133 :TRELSEHVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100806 # 1k47A.426.272 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)P426 (1k47A)T271 because E (beta_S) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 1k47A 272 :PLLRQLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=100807 # 1tl2A.426.165 read from T0547.t06.many.frag # found chain 1tl2A in template set Warning: unaligning (T0547)P426 (1tl2A)Q166 because G (3-10) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 1tl2A 167 :DNWLARAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=100808 # 1lktA.426.37 read from T0547.t06.many.frag # found chain 1lktA in template set Warning: unaligning (T0547)Q433 (1lktA)Y50 because E (beta_S) conformation "forbidden" or filtered. T0547 426 :PADLLAI 1lktA 43 :PANQIPV T0547 434 :D 1lktA 51 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=100810 # 1ga6A.426.308 read from T0547.t06.many.frag # found chain 1ga6A in training set Warning: unaligning (T0547)A427 because of BadResidue code BAD_PEPTIDE in next template residue (1ga6A)P311 Warning: unaligning (T0547)D428 because of BadResidue code BAD_PEPTIDE at template residue (1ga6A)P311 T0547 426 :P 1ga6A 309 :G T0547 429 :LLAIQD 1ga6A 312 :AASFYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=100812 # 2anuA.426.130 read from T0547.t06.many.frag # found chain 2anuA in template set T0547 426 :PADLLAIQD 2anuA 119 :SLPVEEIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100813 # 1e5kA.426.105 read from T0547.t06.many.frag # found chain 1e5kA in training set T0547 426 :PADLLAIQD 1e5kA 106 :PPDLAARLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=100814 # 1c8nA.426.162 read from T0547.t06.many.frag # found chain 1c8nA in template set T0547 426 :PADLLAIQD 1c8nA 163 :DVAPGSRVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=100815 # 1twfH.426.107 read from T0547.t06.many.frag # found chain 1twfH in template set Warning: unaligning (T0547)Q433 (1twfH)Y115 because E (beta_S) conformation "forbidden" or filtered. T0547 426 :PADLLAI 1twfH 108 :SKDLIAV T0547 434 :D 1twfH 116 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=100817 # 1cfr.426.140 read from T0547.t06.many.frag # found chain 1cfr in template set T0547 426 :PADLLAIQD 1cfr 141 :RGRREELKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100818 # 1u8xX.426.305 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)P426 (1u8xX)H283 because D (zeta) conformation "forbidden" or filtered. T0547 427 :ADLLAIQD 1u8xX 284 :TRANEVME Number of specific fragments extracted= 1 number of extra gaps= 1 total=100819 # 1tv8A.427.282 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 427 :ADLLAIQDE 1tv8A 283 :VDGFNVKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=100820 # 1v70A.427.14 read from T0547.t06.many.frag # found chain 1v70A in training set T0547 427 :ADLLAIQDE 1v70A 15 :EKMAKIPVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=100821 # 1smxA.427.55 read from T0547.t06.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)D428 (1smxA)G86 because S (epsilon) conformation "forbidden" or filtered. T0547 427 :A 1smxA 85 :H T0547 429 :LLAIQDE 1smxA 87 :RPNIKDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=100823 # 1tl9A.427.182 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)D428 (1tl9A)C209 because E (beta_S) conformation "forbidden" or filtered. T0547 427 :A 1tl9A 208 :G T0547 429 :LLAIQDE 1tl9A 210 :TSEAFED Number of specific fragments extracted= 2 number of extra gaps= 1 total=100825 # 1cczA.427.20 read from T0547.t06.many.frag # found chain 1cczA in training set T0547 427 :ADLLAIQDE 1cczA 21 :VPLKEVLWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100826 # 1yqyA.427.454 read from T0547.t06.many.frag # found chain 1yqyA in template set T0547 427 :ADLLAIQDE 1yqyA 712 :KKFIDIFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100827 # 1pb7A.427.203 read from T0547.t06.many.frag # found chain 1pb7A in training set Warning: unaligning (T0547)D428 (1pb7A)S205 because Y (epsilon') conformation "forbidden" or filtered. T0547 427 :A 1pb7A 204 :E T0547 429 :LLAIQDE 1pb7A 206 :AAEAIQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=100829 # 1jfiA.427.11 read from T0547.t06.many.frag # found chain 1jfiA in template set T0547 427 :ADLLAIQDE 1jfiA 12 :FPPARIKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=100830 # 1qlmA.427.262 read from T0547.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)D428 (1qlmA)P264 because P (beta_P) conformation "forbidden" or filtered. T0547 427 :A 1qlmA 263 :K T0547 429 :LLAIQDE 1qlmA 265 :FMKIFEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100832 # 1l8aA.427.782 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 427 :ADLLAIQDE 1l8aA 783 :PRVPYIAQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100833 # 1u61A.427.69 read from T0547.t06.many.frag # found chain 1u61A in template set T0547 427 :ADLLAIQDE 1u61A 67 :EEEEAVLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=100834 # 1twfH.427.108 read from T0547.t06.many.frag # found chain 1twfH in template set Warning: unaligning (T0547)D434 (1twfH)Y116 because E (beta_S) conformation "forbidden" or filtered. T0547 427 :ADLLAIQ 1twfH 109 :KDLIAVY T0547 435 :E 1twfH 117 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=100836 # 1mtyD.427.461 read from T0547.t06.many.frag # found chain 1mtyD in training set Warning: unaligning (T0547)A427 (1mtyD)R476 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1mtyD)E477 because P (beta_P) conformation "forbidden" or filtered. T0547 429 :LLAIQDE 1mtyD 478 :LSEVIAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=100837 # 1j3wA.427.78 read from T0547.t06.many.frag # found chain 1j3wA in training set Warning: unaligning (T0547)L429 (1j3wA)R81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D434 (1j3wA)V86 because E (beta_S) conformation "forbidden" or filtered. T0547 427 :AD 1j3wA 79 :EA T0547 430 :LAIQ 1j3wA 82 :FQEE T0547 435 :E 1j3wA 87 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=100840 # 1zd0A.427.71 read from T0547.t06.many.frag # found chain 1zd0A in training set T0547 427 :ADLLAIQDE 1zd0A 71 :KTVPGEILV Number of specific fragments extracted= 1 number of extra gaps= 0 total=100841 # 1rq2A.427.208 read from T0547.t06.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)A427 (1rq2A)V206 because D (zeta) conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 1rq2A 207 :DFADVKGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=100842 # 1lktA.427.38 read from T0547.t06.many.frag # found chain 1lktA in template set T0547 427 :ADLLAIQDE 1lktA 44 :ANQIPVYIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100843 # 1ospO.427.32 read from T0547.t06.many.frag # found chain 1ospO in template set Warning: unaligning (T0547)Q433 (1ospO)I55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D434 (1ospO)A56 because E (beta_S) conformation "forbidden" or filtered. T0547 427 :ADLLAI 1ospO 49 :DGKYDL T0547 435 :E 1ospO 57 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=100845 # 1mml.427.155 read from T0547.t06.many.frag # found chain 1mml in training set Warning: unaligning (T0547)A431 (1mml)A169 because P (beta_P) conformation "forbidden" or filtered. T0547 427 :ADLL 1mml 165 :QPLF T0547 432 :IQDE 1mml 170 :FEWR Number of specific fragments extracted= 2 number of extra gaps= 1 total=100847 # 1e4cP.427.133 read from T0547.t06.many.frag # found chain 1e4cP in training set T0547 427 :ADLLAIQDE 1e4cP 134 :RELSEHVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100848 # 1knwA.427.388 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)A427 (1knwA)R389 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D428 (1knwA)P390 because P (beta_P) conformation "forbidden" or filtered. T0547 429 :LLAIQDE 1knwA 391 :LLPEVLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=100849 # 1xrsA.427.379 read from T0547.t06.many.frag # found chain 1xrsA in template set T0547 427 :ADLLAIQDE 1xrsA 380 :GNIFKGHIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=100850 # 1c8nA.427.163 read from T0547.t06.many.frag # found chain 1c8nA in template set Warning: unaligning (T0547)D428 (1c8nA)A165 because P (beta_P) conformation "forbidden" or filtered. T0547 427 :A 1c8nA 164 :V T0547 429 :LLAIQDE 1c8nA 166 :PGSRVQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=100852 # 1tl2A.427.166 read from T0547.t06.many.frag # found chain 1tl2A in template set Warning: unaligning (T0547)I432 (1tl2A)R172 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q433 (1tl2A)A173 because P (beta_P) conformation "forbidden" or filtered. T0547 427 :ADLLA 1tl2A 167 :DNWLA T0547 434 :DE 1tl2A 174 :TK Number of specific fragments extracted= 2 number of extra gaps= 1 total=100854 # 1cfr.427.141 read from T0547.t06.many.frag # found chain 1cfr in template set T0547 427 :ADLLAIQDE 1cfr 142 :GRREELKSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=100855 # 1qs1A.427.216 read from T0547.t06.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)A427 (1qs1A)T217 because D (zeta) conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 1qs1A 218 :PTKAGVIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=100856 # 2d1pC.427.11 read from T0547.t06.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)A427 (2d1pC)T12 because E (beta_S) conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 2d1pC 13 :DFAALLRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=100857 # 1u8xX.427.306 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)A427 (1u8xX)T284 because P (beta_P) conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 1u8xX 285 :RANEVMEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=100858 # 2fq3A.427.22 read from T0547.t06.many.frag # found chain 2fq3A in training set Warning: unaligning (T0547)D428 (2fq3A)K318 because Y (epsilon') conformation "forbidden" or filtered. T0547 427 :A 2fq3A 317 :E T0547 429 :LLAIQDE 2fq3A 319 :IHSIEVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=100860 # 1l3lA.427.95 read from T0547.t06.many.frag # found chain 1l3lA in training set T0547 427 :ADLLAIQDE 1l3lA 96 :KDERAFYDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=100861 # 1tv8A.428.283 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 428 :DLLAIQDEV 1tv8A 284 :DGFNVKAFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=100862 # 1yqyA.428.455 read from T0547.t06.many.frag # found chain 1yqyA in template set T0547 428 :DLLAIQDEV 1yqyA 713 :KFIDIFKEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100863 # 1tl9A.428.183 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)V436 (1tl9A)F217 because G (3-10) conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 1tl9A 209 :CTSEAFED Number of specific fragments extracted= 1 number of extra gaps= 1 total=100864 # 1v70A.428.15 read from T0547.t06.many.frag # found chain 1v70A in training set Warning: unaligning (T0547)D428 (1v70A)K16 because Y (epsilon') conformation "forbidden" or filtered. T0547 429 :LLAIQDEV 1v70A 17 :MAKIPVFQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=100865 # 1jfiA.428.12 read from T0547.t06.many.frag # found chain 1jfiA in template set T0547 428 :DLLAIQDEV 1jfiA 13 :PPARIKKIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=100866 # 1cczA.428.21 read from T0547.t06.many.frag # found chain 1cczA in training set Warning: unaligning (T0547)D434 (1cczA)W28 because E (beta_S) conformation "forbidden" or filtered. T0547 428 :DLLAIQ 1cczA 22 :PLKEVL T0547 435 :EV 1cczA 29 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=100868 # 1smxA.428.56 read from T0547.t06.many.frag # found chain 1smxA in training set T0547 428 :DLLAIQDEV 1smxA 86 :GRPNIKDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100869 # 1pb7A.428.204 read from T0547.t06.many.frag # found chain 1pb7A in training set Warning: unaligning (T0547)D428 (1pb7A)S205 because Y (epsilon') conformation "forbidden" or filtered. T0547 429 :LLAIQDEV 1pb7A 206 :AAEAIQAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=100870 # 1u61A.428.70 read from T0547.t06.many.frag # found chain 1u61A in template set T0547 428 :DLLAIQDEV 1u61A 68 :EEEAVLRRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100871 # 1rq2A.428.209 read from T0547.t06.many.frag # found chain 1rq2A in template set T0547 428 :DLLAIQDEV 1rq2A 207 :DFADVKGIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=100872 # 1qlmA.428.263 read from T0547.t06.many.frag # found chain 1qlmA in template set T0547 428 :DLLAIQDEV 1qlmA 264 :PFMKIFEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100873 # 1l8aA.428.783 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 428 :DLLAIQDEV 1l8aA 784 :RVPYIAQVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=100874 # 1twfH.428.109 read from T0547.t06.many.frag # found chain 1twfH in template set T0547 428 :DLLAIQDEV 1twfH 110 :DLIAVYYSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=100875 # 1mml.428.156 read from T0547.t06.many.frag # found chain 1mml in training set T0547 428 :DLLAIQDEV 1mml 166 :PLFAFEWRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=100876 # 1mtyD.428.462 read from T0547.t06.many.frag # found chain 1mtyD in training set T0547 428 :DLLAIQDEV 1mtyD 477 :ELSEVIAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100877 # 1e4cP.428.134 read from T0547.t06.many.frag # found chain 1e4cP in training set T0547 428 :DLLAIQDEV 1e4cP 135 :ELSEHVALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100878 # 1uscA.428.77 read from T0547.t06.many.frag # found chain 1uscA in training set T0547 428 :DLLAIQDEV 1uscA 78 :GQKDLVHWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100879 # 2d1pC.428.12 read from T0547.t06.many.frag # found chain 2d1pC in template set T0547 428 :DLLAIQDEV 2d1pC 13 :DFAALLRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100880 # 1j3wA.428.79 read from T0547.t06.many.frag # found chain 1j3wA in training set Warning: unaligning (T0547)L429 (1j3wA)R81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q433 (1j3wA)E85 because E (beta_S) conformation "forbidden" or filtered. T0547 428 :D 1j3wA 80 :A T0547 430 :LAI 1j3wA 82 :FQE T0547 434 :DEV 1j3wA 86 :VHQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=100883 # 1qs1A.428.217 read from T0547.t06.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)D428 (1qs1A)P218 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I432 (1qs1A)G222 because Y (epsilon') conformation "forbidden" or filtered. T0547 429 :LLA 1qs1A 219 :TKA T0547 433 :QDEV 1qs1A 223 :VILN Number of specific fragments extracted= 2 number of extra gaps= 2 total=100885 # 1lktA.428.39 read from T0547.t06.many.frag # found chain 1lktA in template set T0547 428 :DLLAIQDEV 1lktA 45 :NQIPVYIEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=100886 # 1jtgB.428.95 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)D428 (1jtgB)T96 because P (beta_P) conformation "forbidden" or filtered. T0547 429 :LLAIQDEV 1jtgB 97 :RAQVLATV Number of specific fragments extracted= 1 number of extra gaps= 1 total=100887 # 1cfr.428.142 read from T0547.t06.many.frag # found chain 1cfr in template set T0547 428 :DLLAIQDEV 1cfr 143 :RREELKSML Number of specific fragments extracted= 1 number of extra gaps= 0 total=100888 # 1l3lA.428.96 read from T0547.t06.many.frag # found chain 1l3lA in training set T0547 428 :DLLAIQDEV 1l3lA 97 :DERAFYDHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=100889 # 1xffA.428.197 read from T0547.t06.many.frag # found chain 1xffA in training set Warning: unaligning (T0547)L430 (1xffA)T200 because Y (epsilon') conformation "forbidden" or filtered. T0547 428 :DL 1xffA 198 :PV T0547 431 :AIQDEV 1xffA 201 :RRFIFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=100891 # 1srqA.428.144 read from T0547.t06.many.frag # found chain 1srqA in template set T0547 428 :DLLAIQDEV 1srqA 219 :AFVEFLEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100892 1d9cA expands to /projects/compbio/data/pdb/1d9c.pdb.gz 1d9cA:# 1d9cA.428.27 read from T0547.t06.many.frag # adding 1d9cA to template set # found chain 1d9cA in template set Warning: unaligning (T0547)V436 (1d9cA)W36 because G (3-10) conformation "forbidden" or filtered. T0547 428 :DLLAIQDE 1d9cA 28 :LFSEILKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=100893 # 1u8xX.428.307 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 428 :DLLAIQDEV 1u8xX 285 :RANEVMEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=100894 # 1pb7A.428.189 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 428 :DLLAIQDEV 1pb7A 190 :ELSTMYRHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=100895 # 1ospO.428.33 read from T0547.t06.many.frag # found chain 1ospO in template set Warning: unaligning (T0547)D428 (1ospO)G50 because L (left) conformation "forbidden" or filtered. T0547 429 :LLAIQDEV 1ospO 51 :KYDLIATV Number of specific fragments extracted= 1 number of extra gaps= 1 total=100896 # 1yqyA.429.456 read from T0547.t06.many.frag # found chain 1yqyA in template set T0547 429 :LLAIQDEVQ 1yqyA 714 :FIDIFKEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100897 # 1v70A.429.16 read from T0547.t06.many.frag # found chain 1v70A in training set Warning: unaligning (T0547)Q437 (1v70A)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 429 :LLAIQDEV 1v70A 17 :MAKIPVFQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=100898 # 1rq2A.429.210 read from T0547.t06.many.frag # found chain 1rq2A in template set T0547 429 :LLAIQDEVQ 1rq2A 208 :FADVKGIMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100899 # 2d1pC.429.13 read from T0547.t06.many.frag # found chain 2d1pC in template set T0547 429 :LLAIQDEVQ 2d1pC 14 :FAALLRLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100900 # 1jfiA.429.13 read from T0547.t06.many.frag # found chain 1jfiA in template set T0547 429 :LLAIQDEVQ 1jfiA 14 :PARIKKIMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=100901 # 1tl9A.429.184 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 429 :LLAIQDEVQ 1tl9A 210 :TSEAFEDFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=100902 # 1tv8A.429.284 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 429 :LLAIQDEVQ 1tv8A 285 :GFNVKAFIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=100903 # 1pb7A.429.205 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 429 :LLAIQDEVQ 1pb7A 206 :AAEAIQAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=100904 # 1u61A.429.71 read from T0547.t06.many.frag # found chain 1u61A in template set Warning: unaligning (T0547)Q437 because of BadResidue code BAD_PEPTIDE in next template residue (1u61A)N78 T0547 429 :LLAIQDEV 1u61A 69 :EEAVLRRG Number of specific fragments extracted= 1 number of extra gaps= 1 total=100905 # 1qlmA.429.264 read from T0547.t06.many.frag # found chain 1qlmA in template set T0547 429 :LLAIQDEVQ 1qlmA 265 :FMKIFEEAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=100906 # 1l8aA.429.784 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)Q437 (1l8aA)N793 because Y (epsilon') conformation "forbidden" or filtered. T0547 429 :LLAIQDEV 1l8aA 785 :VPYIAQVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=100907 # 1e4cP.429.135 read from T0547.t06.many.frag # found chain 1e4cP in training set T0547 429 :LLAIQDEVQ 1e4cP 136 :LSEHVALAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=100908 # 1cczA.429.22 read from T0547.t06.many.frag # found chain 1cczA in training set Warning: unaligning (T0547)Q433 (1cczA)L27 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q437 (1cczA)Q31 because S (epsilon) conformation "forbidden" or filtered. T0547 429 :LLAI 1cczA 23 :LKEV T0547 434 :DEV 1cczA 28 :WKK Number of specific fragments extracted= 2 number of extra gaps= 2 total=100910 # 1cfr.429.143 read from T0547.t06.many.frag # found chain 1cfr in template set T0547 429 :LLAIQDEVQ 1cfr 144 :REELKSMLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100911 # 1mtyD.429.463 read from T0547.t06.many.frag # found chain 1mtyD in training set T0547 429 :LLAIQDEVQ 1mtyD 478 :LSEVIAELH Number of specific fragments extracted= 1 number of extra gaps= 0 total=100912 # 1mml.429.157 read from T0547.t06.many.frag # found chain 1mml in training set Warning: unaligning (T0547)I432 (1mml)F170 because Y (epsilon') conformation "forbidden" or filtered. T0547 429 :LLA 1mml 167 :LFA T0547 433 :QDEVQ 1mml 171 :EWRDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=100914 # 1twfH.429.110 read from T0547.t06.many.frag # found chain 1twfH in template set Warning: unaligning (T0547)D434 (1twfH)Y116 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q437 (1twfH)G119 because L (left) conformation "forbidden" or filtered. T0547 429 :LLAIQ 1twfH 111 :LIAVY T0547 435 :EV 1twfH 117 :SF Number of specific fragments extracted= 2 number of extra gaps= 2 total=100916 # 1jtgB.429.96 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)V436 (1jtgB)V104 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q437 (1jtgB)G105 because S (epsilon) conformation "forbidden" or filtered. T0547 429 :LLAIQDE 1jtgB 97 :RAQVLAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=100917 # 2a1rA.429.342 read from T0547.t06.many.frag # found chain 2a1rA in template set T0547 429 :LLAIQDEVQ 2a1rA 343 :LAELEKRLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100918 # 1pb7A.429.190 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 429 :LLAIQDEVQ 1pb7A 191 :LSTMYRHME Number of specific fragments extracted= 1 number of extra gaps= 0 total=100919 # 1gtkA.429.151 read from T0547.t06.many.frag # found chain 1gtkA in training set T0547 429 :LLAIQDEVQ 1gtkA 152 :VGTRLSKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=100920 # 1smxA.429.57 read from T0547.t06.many.frag # found chain 1smxA in training set T0547 429 :LLAIQDEVQ 1smxA 87 :RPNIKDVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=100921 # 1lktA.429.40 read from T0547.t06.many.frag # found chain 1lktA in template set Warning: unaligning (T0547)Q433 (1lktA)Y50 because E (beta_S) conformation "forbidden" or filtered. T0547 429 :LLAI 1lktA 46 :QIPV T0547 434 :DEVQ 1lktA 51 :IENE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100923 # 1xffA.429.198 read from T0547.t06.many.frag # found chain 1xffA in training set Warning: unaligning (T0547)Q433 (1xffA)F203 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E435 (1xffA)F205 because P (beta_P) conformation "forbidden" or filtered. T0547 429 :LLAI 1xffA 199 :VTRR T0547 434 :D 1xffA 204 :I T0547 436 :VQ 1xffA 206 :LE Number of specific fragments extracted= 3 number of extra gaps= 2 total=100926 # 1d9cA.429.28 read from T0547.t06.many.frag # found chain 1d9cA in template set T0547 429 :LLAIQDEVQ 1d9cA 29 :FSEILKNWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100927 # 1lshA.429.764 read from T0547.t06.many.frag # found chain 1lshA in template set T0547 429 :LLAIQDEVQ 1lshA 781 :IGAVVSKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100928 # 1uscA.429.78 read from T0547.t06.many.frag # found chain 1uscA in training set T0547 429 :LLAIQDEVQ 1uscA 79 :QKDLVHWLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100929 # 1k47A.429.275 read from T0547.t06.many.frag # found chain 1k47A in template set T0547 429 :LLAIQDEVQ 1k47A 274 :LRQLKEASQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=100930 # 1srqA.429.145 read from T0547.t06.many.frag # found chain 1srqA in template set T0547 429 :LLAIQDEVQ 1srqA 220 :FVEFLEFLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100931 # 1j3wA.429.80 read from T0547.t06.many.frag # found chain 1j3wA in training set Warning: unaligning (T0547)L429 (1j3wA)R81 because Y (epsilon') conformation "forbidden" or filtered. T0547 430 :LAIQDEVQ 1j3wA 82 :FQEEVHQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=100932 # 1yqyA.430.457 read from T0547.t06.many.frag # found chain 1yqyA in template set T0547 430 :LAIQDEVQE 1yqyA 715 :IDIFKEEGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100933 # 2d1pC.430.14 read from T0547.t06.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)E438 (2d1pC)E23 because P (beta_P) conformation "forbidden" or filtered. T0547 430 :LAIQDEVQ 2d1pC 15 :AALLRLLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=100934 # 1rq2A.430.211 read from T0547.t06.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)E438 (1rq2A)G217 because L (left) conformation "forbidden" or filtered. T0547 430 :LAIQDEVQ 1rq2A 209 :ADVKGIMS Number of specific fragments extracted= 1 number of extra gaps= 1 total=100935 # 1jtgB.430.97 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)Q437 (1jtgB)G105 because S (epsilon) conformation "forbidden" or filtered. T0547 430 :LAIQDEV 1jtgB 98 :AQVLATV T0547 438 :E 1jtgB 106 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=100937 # 1v70A.430.17 read from T0547.t06.many.frag # found chain 1v70A in training set Warning: unaligning (T0547)Q437 (1v70A)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 430 :LAIQDEV 1v70A 18 :AKIPVFQ T0547 438 :E 1v70A 26 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=100939 # 1tl9A.430.185 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 430 :LAIQDEVQE 1tl9A 211 :SEAFEDFTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100940 # 1jfiA.430.14 read from T0547.t06.many.frag # found chain 1jfiA in template set T0547 430 :LAIQDEVQE 1jfiA 15 :ARIKKIMQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=100941 # 1pb7A.430.206 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 430 :LAIQDEVQE 1pb7A 207 :AEAIQAVRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=100942 # 1e4cP.430.136 read from T0547.t06.many.frag # found chain 1e4cP in training set T0547 430 :LAIQDEVQE 1e4cP 137 :SEHVALALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100943 # 1u61A.430.72 read from T0547.t06.many.frag # found chain 1u61A in template set Warning: unaligning (T0547)Q437 because of BadResidue code BAD_PEPTIDE in next template residue (1u61A)N78 Warning: unaligning (T0547)E438 because of BadResidue code BAD_PEPTIDE at template residue (1u61A)N78 T0547 430 :LAIQDEV 1u61A 70 :EAVLRRG Number of specific fragments extracted= 1 number of extra gaps= 1 total=100944 # 1qlmA.430.265 read from T0547.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)E438 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0547 430 :LAIQDEVQ 1qlmA 266 :MKIFEEAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=100945 # 1xffA.430.199 read from T0547.t06.many.frag # found chain 1xffA in training set Warning: unaligning (T0547)E438 (1xffA)E208 because P (beta_P) conformation "forbidden" or filtered. T0547 430 :LAIQDEVQ 1xffA 200 :TRRFIFLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=100946 # 1l8aA.430.785 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 430 :LAIQDEVQE 1l8aA 786 :PYIAQVMND Number of specific fragments extracted= 1 number of extra gaps= 0 total=100947 # 1lktA.430.41 read from T0547.t06.many.frag # found chain 1lktA in template set T0547 430 :LAIQDEVQE 1lktA 47 :IPVYIENED Number of specific fragments extracted= 1 number of extra gaps= 0 total=100948 # 1gtkA.430.152 read from T0547.t06.many.frag # found chain 1gtkA in training set T0547 430 :LAIQDEVQE 1gtkA 153 :GTRLSKLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=100949 # 1lshA.430.765 read from T0547.t06.many.frag # found chain 1lshA in template set T0547 430 :LAIQDEVQE 1lshA 782 :GAVVSKLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=100950 # 1tv8A.430.285 read from T0547.t06.many.frag # found chain 1tv8A in template set Warning: unaligning (T0547)A431 (1tv8A)N287 because N (gamma') conformation "forbidden" or filtered. T0547 430 :L 1tv8A 286 :F T0547 432 :IQDEVQE 1tv8A 288 :VKAFIRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=100952 # 1k47A.430.276 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)E438 (1k47A)D283 because L (left) conformation "forbidden" or filtered. T0547 430 :LAIQDEVQ 1k47A 275 :RQLKEASQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=100953 # 1yvrA.430.430 read from T0547.t06.many.frag # found chain 1yvrA in template set T0547 430 :LAIQDEVQE 1yvrA 431 :HEVVEKMSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=100954 # 2a1rA.430.343 read from T0547.t06.many.frag # found chain 2a1rA in template set T0547 430 :LAIQDEVQE 2a1rA 344 :AELEKRLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=100955 # 1cfr.430.144 read from T0547.t06.many.frag # found chain 1cfr in template set Warning: unaligning (T0547)V436 (1cfr)L151 because G (3-10) conformation "forbidden" or filtered. T0547 430 :LAIQDE 1cfr 145 :EELKSM T0547 437 :QE 1cfr 152 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=100957 # 1pb7A.430.191 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 430 :LAIQDEVQE 1pb7A 192 :STMYRHMEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100958 # 1uscA.430.79 read from T0547.t06.many.frag # found chain 1uscA in training set T0547 430 :LAIQDEVQE 1uscA 80 :KDLVHWLGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=100959 # 1mml.430.158 read from T0547.t06.many.frag # found chain 1mml in training set Warning: unaligning (T0547)A431 (1mml)A169 because P (beta_P) conformation "forbidden" or filtered. T0547 430 :L 1mml 168 :F T0547 432 :IQDEVQE 1mml 170 :FEWRDPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=100961 # 1l3lA.430.98 read from T0547.t06.many.frag # found chain 1l3lA in training set T0547 430 :LAIQDEVQE 1l3lA 99 :RAFYDHASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=100962 # 3seb.430.70 read from T0547.t06.many.frag # found chain 3seb in training set Warning: unaligning (T0547)E438 (3seb)D79 because T (delta_L) conformation "forbidden" or filtered. T0547 430 :LAIQDEVQ 3seb 71 :KDLADKYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=100963 # 1d9cA.430.29 read from T0547.t06.many.frag # found chain 1d9cA in template set T0547 430 :LAIQDEVQE 1d9cA 30 :SEILKNWKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=100964 # 1twfH.430.111 read from T0547.t06.many.frag # found chain 1twfH in template set Warning: unaligning (T0547)D434 (1twfH)Y116 because E (beta_S) conformation "forbidden" or filtered. T0547 430 :LAIQ 1twfH 112 :IAVY T0547 435 :EVQE 1twfH 117 :SFGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=100966 # 1u8xX.430.309 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)E438 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1u8xX)F296 T0547 430 :LAIQDEVQ 1u8xX 287 :NEVMEGRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=100967 # 1g8mA.430.351 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)E438 (1g8mA)N360 because L (left) conformation "forbidden" or filtered. T0547 430 :LAIQDEVQ 1g8mA 352 :LKILSKKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=100968 # 1jtgB.431.98 read from T0547.t06.many.frag # found chain 1jtgB in template set T0547 431 :AIQDEVQER 1jtgB 99 :QVLATVGQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100969 # 2d1pC.431.15 read from T0547.t06.many.frag # found chain 2d1pC in template set T0547 431 :AIQDEVQER 2d1pC 16 :ALLRLLSEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=100970 # 3seb.431.71 read from T0547.t06.many.frag # found chain 3seb in training set T0547 431 :AIQDEVQER 3seb 72 :DLADKYKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=100971 # 1yqyA.431.458 read from T0547.t06.many.frag # found chain 1yqyA in template set T0547 431 :AIQDEVQER 1yqyA 716 :DIFKEEGSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=100972 # 1gtkA.431.153 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)R439 (1gtkA)G162 because T (delta_L) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 1gtkA 154 :TRLSKLDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=100973 # 1jfiA.431.15 read from T0547.t06.many.frag # found chain 1jfiA in template set Warning: unaligning (T0547)Q437 (1jfiA)Q22 because G (3-10) conformation "forbidden" or filtered. T0547 431 :AIQDEV 1jfiA 16 :RIKKIM T0547 438 :ER 1jfiA 23 :TD Number of specific fragments extracted= 2 number of extra gaps= 1 total=100975 # 1rq2A.431.212 read from T0547.t06.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)E438 (1rq2A)G217 because L (left) conformation "forbidden" or filtered. T0547 431 :AIQDEVQ 1rq2A 210 :DVKGIMS T0547 439 :R 1rq2A 218 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=100977 # 1v70A.431.18 read from T0547.t06.many.frag # found chain 1v70A in training set Warning: unaligning (T0547)Q437 (1v70A)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 431 :AIQDEV 1v70A 19 :KIPVFQ T0547 438 :ER 1v70A 26 :ER Number of specific fragments extracted= 2 number of extra gaps= 1 total=100979 # 1k47A.431.277 read from T0547.t06.many.frag # found chain 1k47A in template set Warning: unaligning (T0547)E438 (1k47A)D283 because L (left) conformation "forbidden" or filtered. T0547 431 :AIQDEVQ 1k47A 276 :QLKEASQ T0547 439 :R 1k47A 284 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=100981 # 1pb7A.431.207 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 431 :AIQDEVQER 1pb7A 208 :EAIQAVRDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=100982 # 1lktA.431.42 read from T0547.t06.many.frag # found chain 1lktA in template set Warning: unaligning (T0547)A431 (1lktA)P48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D434 (1lktA)I51 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1lktA)G56 because T (delta_L) conformation "forbidden" or filtered. T0547 432 :IQ 1lktA 49 :VY T0547 435 :EVQE 1lktA 52 :ENED Number of specific fragments extracted= 2 number of extra gaps= 3 total=100984 # 1xffA.431.200 read from T0547.t06.many.frag # found chain 1xffA in training set Warning: unaligning (T0547)D434 (1xffA)I204 because E (beta_S) conformation "forbidden" or filtered. T0547 431 :AIQ 1xffA 201 :RRF T0547 435 :EVQER 1xffA 205 :FLEEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=100986 # 1w8kA.431.141 read from T0547.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)R439 (1w8kA)K190 because L (left) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 1w8kA 182 :PAVYDEKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=100987 # 1tl9A.431.186 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)V436 (1tl9A)F217 because G (3-10) conformation "forbidden" or filtered. T0547 431 :AIQDE 1tl9A 212 :EAFED T0547 437 :QER 1tl9A 218 :TGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=100989 # 1pb7A.431.192 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 431 :AIQDEVQER 1pb7A 193 :TMYRHMEKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=100990 # 1cfr.431.145 read from T0547.t06.many.frag # found chain 1cfr in template set T0547 431 :AIQDEVQER 1cfr 146 :ELKSMLKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=100991 # 1l8aA.431.786 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)Q437 (1l8aA)N793 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1l8aA)A795 because P (beta_P) conformation "forbidden" or filtered. T0547 431 :AIQDEV 1l8aA 787 :YIAQVM T0547 438 :E 1l8aA 794 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=100993 # 2blnA.431.229 read from T0547.t06.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)A431 (2blnA)G230 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D434 (2blnA)S233 because Y (epsilon') conformation "forbidden" or filtered. T0547 432 :IQ 2blnA 231 :AF T0547 435 :EVQER 2blnA 234 :YVGNQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=100995 # 1umwA.431.45 read from T0547.t06.many.frag # found chain 1umwA in template set Warning: unaligning (T0547)Q433 (1umwA)W414 because Y (epsilon') conformation "forbidden" or filtered. T0547 431 :AI 1umwA 412 :SK T0547 434 :DEVQER 1umwA 415 :VDYSDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=100997 # 1tv8A.431.286 read from T0547.t06.many.frag # found chain 1tv8A in template set Warning: unaligning (T0547)R439 (1tv8A)G295 because L (left) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 1tv8A 287 :NVKAFIRS Number of specific fragments extracted= 1 number of extra gaps= 1 total=100998 # 1u61A.431.73 read from T0547.t06.many.frag # found chain 1u61A in template set Warning: unaligning (T0547)Q437 because of BadResidue code BAD_PEPTIDE in next template residue (1u61A)N78 Warning: unaligning (T0547)E438 because of BadResidue code BAD_PEPTIDE at template residue (1u61A)N78 Warning: unaligning (T0547)R439 because of BadResidue code BAD_PEPTIDE in next template residue (1u61A)N80 T0547 431 :AIQDEV 1u61A 71 :AVLRRG Number of specific fragments extracted= 1 number of extra gaps= 1 total=100999 # 1h72C.431.239 read from T0547.t06.many.frag # found chain 1h72C in training set T0547 431 :AIQDEVQER 1h72C 244 :KIKEEVKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101000 # 1qs1A.431.220 read from T0547.t06.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)Q437 (1qs1A)N227 because L (left) conformation "forbidden" or filtered. T0547 431 :AIQDEV 1qs1A 221 :AGVILN T0547 438 :ER 1qs1A 228 :SE Number of specific fragments extracted= 2 number of extra gaps= 1 total=101002 # 1yvrA.431.431 read from T0547.t06.many.frag # found chain 1yvrA in template set T0547 431 :AIQDEVQER 1yvrA 432 :EVVEKMSDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101003 # 2c5uA.431.145 read from T0547.t06.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)R439 (2c5uA)G153 because T (delta_L) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 2c5uA 145 :RLKELAED Number of specific fragments extracted= 1 number of extra gaps= 1 total=101004 # 1l3lA.431.99 read from T0547.t06.many.frag # found chain 1l3lA in training set T0547 431 :AIQDEVQER 1l3lA 100 :AFYDHASDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=101005 1ex2A expands to /projects/compbio/data/pdb/1ex2.pdb.gz 1ex2A:# 1ex2A.431.90 read from T0547.t06.many.frag # adding 1ex2A to template set # found chain 1ex2A in template set Warning: unaligning (T0547)E438 (1ex2A)G98 because L (left) conformation "forbidden" or filtered. T0547 431 :AIQDEVQ 1ex2A 91 :SMLRRLS T0547 439 :R 1ex2A 99 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=101007 # 1g8mA.431.352 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)Q437 (1g8mA)K359 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1g8mA)G361 because T (delta_L) conformation "forbidden" or filtered. T0547 431 :AIQDEV 1g8mA 353 :KILSKK T0547 438 :E 1g8mA 360 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=101009 # 1lshA.431.766 read from T0547.t06.many.frag # found chain 1lshA in template set Warning: unaligning (T0547)R439 (1lshA)G791 because S (epsilon) conformation "forbidden" or filtered. T0547 431 :AIQDEVQE 1lshA 783 :AVVSKLEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=101010 # 1uscA.431.80 read from T0547.t06.many.frag # found chain 1uscA in training set T0547 431 :AIQDEVQER 1uscA 81 :DLVHWLGSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=101011 # 1jtgB.432.99 read from T0547.t06.many.frag # found chain 1jtgB in template set T0547 432 :IQDEVQERY 1jtgB 100 :VLATVGQGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101012 # 1gtkA.432.154 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)R439 (1gtkA)G162 because T (delta_L) conformation "forbidden" or filtered. T0547 432 :IQDEVQE 1gtkA 155 :RLSKLDN T0547 440 :Y 1gtkA 163 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=101014 # 2d1pC.432.16 read from T0547.t06.many.frag # found chain 2d1pC in template set T0547 432 :IQDEVQERY 2d1pC 17 :LLRLLSEGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=101015 # 3seb.432.72 read from T0547.t06.many.frag # found chain 3seb in training set Warning: unaligning (T0547)Q437 (3seb)K78 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (3seb)D79 because T (delta_L) conformation "forbidden" or filtered. T0547 432 :IQDEV 3seb 73 :LADKY T0547 439 :RY 3seb 80 :KY Number of specific fragments extracted= 2 number of extra gaps= 1 total=101017 # 1xffA.432.201 read from T0547.t06.many.frag # found chain 1xffA in training set Warning: unaligning (T0547)D434 (1xffA)I204 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q437 (1xffA)E207 because P (beta_P) conformation "forbidden" or filtered. T0547 432 :IQ 1xffA 202 :RF T0547 435 :EV 1xffA 205 :FL T0547 438 :ERY 1xffA 208 :EGD Number of specific fragments extracted= 3 number of extra gaps= 2 total=101020 # 1umwA.432.46 read from T0547.t06.many.frag # found chain 1umwA in template set Warning: unaligning (T0547)Q433 (1umwA)W414 because Y (epsilon') conformation "forbidden" or filtered. T0547 432 :I 1umwA 413 :K T0547 434 :DEVQERY 1umwA 415 :VDYSDKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=101022 # 1w8kA.432.142 read from T0547.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)D434 (1w8kA)Y185 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1w8kA)K190 because L (left) conformation "forbidden" or filtered. T0547 432 :IQ 1w8kA 183 :AV T0547 435 :EVQE 1w8kA 186 :DEKE T0547 440 :Y 1w8kA 191 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=101025 # 2c5uA.432.146 read from T0547.t06.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)R439 (2c5uA)G153 because T (delta_L) conformation "forbidden" or filtered. T0547 432 :IQDEVQE 2c5uA 146 :LKELAED T0547 440 :Y 2c5uA 154 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=101027 # 1v70A.432.19 read from T0547.t06.many.frag # found chain 1v70A in training set T0547 432 :IQDEVQERY 1v70A 20 :IPVFQSERM Number of specific fragments extracted= 1 number of extra gaps= 0 total=101028 # 1ry9A.432.54 read from T0547.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0547)E435 (1ry9A)A46 because Y (epsilon') conformation "forbidden" or filtered. T0547 432 :IQD 1ry9A 43 :INI T0547 436 :VQERY 1ry9A 47 :LVNEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=101030 # 1j3wA.432.83 read from T0547.t06.many.frag # found chain 1j3wA in training set Warning: unaligning (T0547)Q437 (1j3wA)G89 because P (beta_P) conformation "forbidden" or filtered. T0547 432 :IQDEV 1j3wA 84 :EEVHQ T0547 438 :ERY 1j3wA 90 :ERM Number of specific fragments extracted= 2 number of extra gaps= 1 total=101032 # 2blnA.432.230 read from T0547.t06.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)D434 (2blnA)S233 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q437 (2blnA)G236 because S (epsilon) conformation "forbidden" or filtered. T0547 432 :IQ 2blnA 231 :AF T0547 435 :EV 2blnA 234 :YV T0547 438 :ERY 2blnA 237 :NQK Number of specific fragments extracted= 3 number of extra gaps= 2 total=101035 # 1pb7A.432.208 read from T0547.t06.many.frag # found chain 1pb7A in training set Warning: unaligning (T0547)R439 (1pb7A)N216 because L (left) conformation "forbidden" or filtered. T0547 432 :IQDEVQE 1pb7A 209 :AIQAVRD T0547 440 :Y 1pb7A 217 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=101037 # 1a8d.432.101 read from T0547.t06.many.frag # found chain 1a8d in training set T0547 432 :IQDEVQERY 1a8d 102 :HLEQYGTNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101038 # 1jfiA.432.16 read from T0547.t06.many.frag # found chain 1jfiA in template set T0547 432 :IQDEVQERY 1jfiA 17 :IKKIMQTDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101039 # 1yqyA.432.459 read from T0547.t06.many.frag # found chain 1yqyA in template set T0547 432 :IQDEVQERY 1yqyA 717 :IFKEEGSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101040 # 1ylnA.432.80 read from T0547.t06.many.frag # found chain 1ylnA in template set Warning: unaligning (T0547)Q437 (1ylnA)Q86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1ylnA)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 432 :IQDEV 1ylnA 81 :LQYFF T0547 438 :E 1ylnA 87 :E T0547 440 :Y 1ylnA 89 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=101043 # 2bj0A.432.100 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)D434 (2bj0A)V103 because E (beta_S) conformation "forbidden" or filtered. T0547 432 :IQ 2bj0A 101 :RV T0547 435 :EVQERY 2bj0A 104 :VSKDGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=101045 # 1pb7A.432.193 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 432 :IQDEVQERY 1pb7A 194 :MYRHMEKHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=101046 # 1tl9A.432.187 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)E438 (1tl9A)G219 because T (delta_L) conformation "forbidden" or filtered. T0547 432 :IQDEVQ 1tl9A 213 :AFEDFT T0547 439 :RY 1tl9A 220 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=101048 # 1g8mA.432.353 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)Q437 (1g8mA)K359 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (1g8mA)N360 because L (left) conformation "forbidden" or filtered. T0547 432 :IQDEV 1g8mA 354 :ILSKK T0547 439 :RY 1g8mA 361 :GG Number of specific fragments extracted= 2 number of extra gaps= 1 total=101050 # 1qs1A.432.221 read from T0547.t06.many.frag # found chain 1qs1A in training set Warning: unaligning (T0547)Q437 (1qs1A)N227 because L (left) conformation "forbidden" or filtered. T0547 432 :IQDEV 1qs1A 222 :GVILN T0547 438 :ERY 1qs1A 228 :SEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=101052 # 1tv8A.432.287 read from T0547.t06.many.frag # found chain 1tv8A in template set Warning: unaligning (T0547)R439 (1tv8A)G295 because L (left) conformation "forbidden" or filtered. T0547 432 :IQDEVQE 1tv8A 288 :VKAFIRS T0547 440 :Y 1tv8A 296 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=101054 # 1cczA.432.25 read from T0547.t06.many.frag # found chain 1cczA in training set Warning: unaligning (T0547)D434 (1cczA)W28 because E (beta_S) conformation "forbidden" or filtered. T0547 432 :IQ 1cczA 26 :VL T0547 435 :EVQERY 1cczA 29 :KKQKDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=101056 # 1rq2A.432.213 read from T0547.t06.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)Q437 (1rq2A)S216 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (1rq2A)G217 because L (left) conformation "forbidden" or filtered. T0547 432 :IQDEV 1rq2A 211 :VKGIM T0547 439 :RY 1rq2A 218 :AG Number of specific fragments extracted= 2 number of extra gaps= 1 total=101058 # 1ex2A.432.91 read from T0547.t06.many.frag # found chain 1ex2A in template set Warning: unaligning (T0547)E438 (1ex2A)G98 because L (left) conformation "forbidden" or filtered. T0547 432 :IQDEVQ 1ex2A 92 :MLRRLS T0547 439 :RY 1ex2A 99 :RS Number of specific fragments extracted= 2 number of extra gaps= 1 total=101060 # 1h72C.432.240 read from T0547.t06.many.frag # found chain 1h72C in training set T0547 432 :IQDEVQERY 1h72C 245 :IKEEVKDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101061 # 1qxmA.432.62 read from T0547.t06.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)Q433 (1qxmA)L50 because P (beta_P) conformation "forbidden" or filtered. T0547 432 :I 1qxmA 49 :R T0547 434 :DEVQERY 1qxmA 51 :IYDTNKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=101063 # 1lktA.432.43 read from T0547.t06.many.frag # found chain 1lktA in template set T0547 432 :IQDEVQERY 1lktA 49 :VYIENEDGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101064 # 1gesA.432.358 read from T0547.t06.many.frag # found chain 1gesA in template set Warning: unaligning (T0547)V436 (1gesA)Y363 because G (3-10) conformation "forbidden" or filtered. T0547 432 :IQDE 1gesA 359 :AREQ T0547 437 :QERY 1gesA 364 :GDDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=101066 # 1jtgB.433.100 read from T0547.t06.many.frag # found chain 1jtgB in template set T0547 433 :QDEVQERYL 1jtgB 101 :LATVGQGSC Number of specific fragments extracted= 1 number of extra gaps= 0 total=101067 # 1gtkA.433.155 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)R439 (1gtkA)G162 because T (delta_L) conformation "forbidden" or filtered. T0547 433 :QDEVQE 1gtkA 156 :LSKLDN T0547 440 :YL 1gtkA 163 :EY Number of specific fragments extracted= 2 number of extra gaps= 1 total=101069 # 2c5uA.433.147 read from T0547.t06.many.frag # found chain 2c5uA in template set T0547 433 :QDEVQERYL 2c5uA 147 :KELAEDGFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=101070 # 3seb.433.73 read from T0547.t06.many.frag # found chain 3seb in training set Warning: unaligning (T0547)V436 (3seb)Y77 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (3seb)D79 because T (delta_L) conformation "forbidden" or filtered. T0547 433 :QDE 3seb 74 :ADK T0547 437 :Q 3seb 78 :K T0547 439 :RYL 3seb 80 :KYV Number of specific fragments extracted= 3 number of extra gaps= 2 total=101073 # 2d1pC.433.17 read from T0547.t06.many.frag # found chain 2d1pC in template set Warning: unaligning (T0547)R439 (2d1pC)G24 because T (delta_L) conformation "forbidden" or filtered. T0547 433 :QDEVQE 2d1pC 18 :LRLLSE T0547 440 :YL 2d1pC 25 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=101075 # 1ylnA.433.81 read from T0547.t06.many.frag # found chain 1ylnA in template set T0547 433 :QDEVQERYL 1ylnA 82 :QYFFQEGFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=101076 # 1ry9A.433.55 read from T0547.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0547)E435 (1ry9A)A46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (1ry9A)N49 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1ry9A)E50 because L (left) conformation "forbidden" or filtered. T0547 433 :QD 1ry9A 44 :NI T0547 436 :VQ 1ry9A 47 :LV T0547 440 :YL 1ry9A 51 :QV Number of specific fragments extracted= 3 number of extra gaps= 2 total=101079 # 1umwA.433.47 read from T0547.t06.many.frag # found chain 1umwA in template set Warning: unaligning (T0547)V436 (1umwA)Y417 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L441 (1umwA)G422 because Y (epsilon') conformation "forbidden" or filtered. T0547 433 :QDE 1umwA 414 :WVD T0547 437 :QERY 1umwA 418 :SDKY Number of specific fragments extracted= 2 number of extra gaps= 2 total=101081 # 1xffA.433.202 read from T0547.t06.many.frag # found chain 1xffA in training set Warning: unaligning (T0547)Q437 (1xffA)E207 because P (beta_P) conformation "forbidden" or filtered. T0547 433 :QDEV 1xffA 203 :FIFL T0547 438 :ERYL 1xffA 208 :EGDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=101083 # 1a8d.433.102 read from T0547.t06.many.frag # found chain 1a8d in training set T0547 433 :QDEVQERYL 1a8d 103 :LEQYGTNEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=101084 # 1v70A.433.20 read from T0547.t06.many.frag # found chain 1v70A in training set Warning: unaligning (T0547)Q437 (1v70A)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 433 :QDEV 1v70A 21 :PVFQ T0547 438 :ERYL 1v70A 26 :ERML Number of specific fragments extracted= 2 number of extra gaps= 1 total=101086 # 2bj0A.433.101 read from T0547.t06.many.frag # found chain 2bj0A in template set T0547 433 :QDEVQERYL 2bj0A 102 :VVVSKDGSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101087 # 1w8kA.433.143 read from T0547.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)D434 (1w8kA)Y185 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1w8kA)K190 because L (left) conformation "forbidden" or filtered. T0547 433 :Q 1w8kA 184 :V T0547 435 :EVQE 1w8kA 186 :DEKE T0547 440 :YL 1w8kA 191 :TC Number of specific fragments extracted= 3 number of extra gaps= 2 total=101090 # 2blnA.433.231 read from T0547.t06.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)Q433 (2blnA)F232 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D434 (2blnA)S233 because Y (epsilon') conformation "forbidden" or filtered. T0547 435 :EVQERYL 2blnA 234 :YVGNQKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=101091 # 1smxA.433.61 read from T0547.t06.many.frag # found chain 1smxA in training set Warning: unaligning (T0547)Q437 (1smxA)R95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (1smxA)E96 because P (beta_P) conformation "forbidden" or filtered. T0547 433 :QDEV 1smxA 91 :KDVL T0547 439 :RYL 1smxA 97 :GQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=101093 # 1j3wA.433.84 read from T0547.t06.many.frag # found chain 1j3wA in training set Warning: unaligning (T0547)Q437 (1j3wA)G89 because P (beta_P) conformation "forbidden" or filtered. T0547 433 :QDEV 1j3wA 85 :EVHQ T0547 438 :ERYL 1j3wA 90 :ERMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=101095 # 1d5tA.433.258 read from T0547.t06.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)Q433 (1d5tA)D257 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (1d5tA)N262 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1d5tA)G263 because T (delta_L) conformation "forbidden" or filtered. T0547 434 :DEVQ 1d5tA 258 :IIME T0547 440 :YL 1d5tA 264 :KV Number of specific fragments extracted= 2 number of extra gaps= 2 total=101097 # 1gesA.433.359 read from T0547.t06.many.frag # found chain 1gesA in template set T0547 433 :QDEVQERYL 1gesA 360 :REQYGDDQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101098 # 1szwA.433.266 read from T0547.t06.many.frag # found chain 1szwA in template set T0547 433 :QDEVQERYL 1szwA 245 :QRRVNDKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101099 # 1uv4A.433.187 read from T0547.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)D434 (1uv4A)L189 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1uv4A)G194 because T (delta_L) conformation "forbidden" or filtered. T0547 433 :Q 1uv4A 188 :T T0547 435 :EVQE 1uv4A 190 :TYQN T0547 440 :YL 1uv4A 195 :YY Number of specific fragments extracted= 3 number of extra gaps= 2 total=101102 # 2axoA.433.225 read from T0547.t06.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)L441 (2axoA)C234 because Y (epsilon') conformation "forbidden" or filtered. T0547 433 :QDEVQERY 2axoA 226 :VAKVKKGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=101103 # 1srqA.433.210 read from T0547.t06.many.frag # found chain 1srqA in template set T0547 433 :QDEVQERYL 1srqA 285 :KRHIGNDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101104 # 1zjcA.433.286 read from T0547.t06.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)Q437 (1zjcA)K288 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (1zjcA)D289 because L (left) conformation "forbidden" or filtered. T0547 433 :QDEV 1zjcA 284 :KLMF T0547 439 :RYL 1zjcA 290 :GEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=101106 # 1h72C.433.241 read from T0547.t06.many.frag # found chain 1h72C in training set T0547 433 :QDEVQERYL 1h72C 246 :KEEVKDKVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=101107 # 1tl9A.433.188 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)E438 (1tl9A)G219 because T (delta_L) conformation "forbidden" or filtered. T0547 433 :QDEVQ 1tl9A 214 :FEDFT T0547 439 :RYL 1tl9A 220 :GVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=101109 # 1pb7A.433.194 read from T0547.t06.many.frag # found chain 1pb7A in training set T0547 433 :QDEVQERYL 1pb7A 195 :YRHMEKHNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=101110 # 1tv8A.433.288 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 433 :QDEVQERYL 1tv8A 289 :KAFIRSGVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=101111 # 1cczA.433.26 read from T0547.t06.many.frag # found chain 1cczA in training set Warning: unaligning (T0547)Q437 (1cczA)Q31 because S (epsilon) conformation "forbidden" or filtered. T0547 433 :QDEV 1cczA 27 :LWKK T0547 438 :ERYL 1cczA 32 :KDKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=101113 # 1tyv.433.468 read from T0547.t06.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)Q433 (1tyv)L593 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (1tyv)G598 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1tyv)S599 because L (left) conformation "forbidden" or filtered. T0547 434 :DEVQ 1tyv 594 :TAIS T0547 440 :YL 1tyv 600 :TP Number of specific fragments extracted= 2 number of extra gaps= 2 total=101115 # 1g8mA.433.354 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)Q437 (1g8mA)K359 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (1g8mA)N360 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1g8mA)G361 because T (delta_L) conformation "forbidden" or filtered. T0547 433 :QDEV 1g8mA 355 :LSKK T0547 440 :YL 1g8mA 362 :GY Number of specific fragments extracted= 2 number of extra gaps= 1 total=101117 # 1jtgB.434.101 read from T0547.t06.many.frag # found chain 1jtgB in template set T0547 434 :DEVQERYLV 1jtgB 102 :ATVGQGSCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=101118 # 2c5uA.434.148 read from T0547.t06.many.frag # found chain 2c5uA in template set T0547 434 :DEVQERYLV 2c5uA 148 :ELAEDGFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101119 # 3seb.434.74 read from T0547.t06.many.frag # found chain 3seb in training set Warning: unaligning (T0547)V436 (3seb)Y77 because G (3-10) conformation "forbidden" or filtered. T0547 434 :DE 3seb 75 :DK T0547 437 :QERYLV 3seb 78 :KDKYVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=101121 # 1gtkA.434.156 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)R439 (1gtkA)G162 because T (delta_L) conformation "forbidden" or filtered. T0547 434 :DEVQE 1gtkA 157 :SKLDN T0547 440 :YLV 1gtkA 163 :EYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=101123 # 1ry9A.434.56 read from T0547.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0547)E435 (1ry9A)A46 because Y (epsilon') conformation "forbidden" or filtered. T0547 434 :D 1ry9A 45 :I T0547 436 :VQERYLV 1ry9A 47 :LVNEQVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=101125 # 1ylnA.434.82 read from T0547.t06.many.frag # found chain 1ylnA in template set Warning: unaligning (T0547)R439 (1ylnA)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 434 :DEVQE 1ylnA 83 :YFFQE T0547 440 :YLV 1ylnA 89 :FWM Number of specific fragments extracted= 2 number of extra gaps= 1 total=101127 # 1umwA.434.48 read from T0547.t06.many.frag # found chain 1umwA in template set Warning: unaligning (T0547)V436 (1umwA)Y417 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1umwA)K420 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L441 (1umwA)G422 because Y (epsilon') conformation "forbidden" or filtered. T0547 434 :DE 1umwA 415 :VD T0547 437 :QE 1umwA 418 :SD T0547 440 :Y 1umwA 421 :Y T0547 442 :V 1umwA 423 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=101131 # 1uv4A.434.188 read from T0547.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)Q437 (1uv4A)Q192 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (1uv4A)N193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1uv4A)G194 because T (delta_L) conformation "forbidden" or filtered. T0547 434 :DEV 1uv4A 189 :LTY T0547 440 :YLV 1uv4A 195 :YYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=101133 # 1a8d.434.103 read from T0547.t06.many.frag # found chain 1a8d in training set T0547 434 :DEVQERYLV 1a8d 104 :EQYGTNEYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101134 # 1w8kA.434.144 read from T0547.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)R439 (1w8kA)K190 because L (left) conformation "forbidden" or filtered. T0547 434 :DEVQE 1w8kA 185 :YDEKE T0547 440 :YLV 1w8kA 191 :TCH Number of specific fragments extracted= 2 number of extra gaps= 1 total=101136 # 2d1pC.434.18 read from T0547.t06.many.frag # found chain 2d1pC in template set T0547 434 :DEVQERYLV 2d1pC 19 :RLLSEGDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101137 # 1xeaA.434.189 read from T0547.t06.many.frag # found chain 1xeaA in template set T0547 434 :DEVQERYLV 1xeaA 190 :YHMSEGLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101138 # 1ng0A.434.145 read from T0547.t06.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)R439 (1ng0A)S151 because P (beta_P) conformation "forbidden" or filtered. T0547 434 :DEVQE 1ng0A 146 :RTMAS T0547 440 :YLV 1ng0A 152 :TSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=101140 # 1smxA.434.62 read from T0547.t06.many.frag # found chain 1smxA in training set T0547 434 :DEVQERYLV 1smxA 92 :DVLREGQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101141 # 1g8mA.434.355 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)E438 (1g8mA)N360 because L (left) conformation "forbidden" or filtered. T0547 434 :DEVQ 1g8mA 356 :SKKK T0547 439 :RYLV 1g8mA 361 :GGYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=101143 # 2blnA.434.232 read from T0547.t06.many.frag # found chain 2blnA in training set T0547 434 :DEVQERYLV 2blnA 233 :SYVGNQKFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=101144 # 1v70A.434.21 read from T0547.t06.many.frag # found chain 1v70A in training set Warning: unaligning (T0547)Q437 (1v70A)S25 because Y (epsilon') conformation "forbidden" or filtered. T0547 434 :DEV 1v70A 22 :VFQ T0547 438 :ERYLV 1v70A 26 :ERMLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=101146 # 1sjwA.434.108 read from T0547.t06.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)E438 (1sjwA)D113 because L (left) conformation "forbidden" or filtered. T0547 434 :DEVQ 1sjwA 109 :MRIV T0547 439 :RYLV 1sjwA 114 :GKIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=101148 # 1szwA.434.267 read from T0547.t06.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)R439 (1szwA)K251 because L (left) conformation "forbidden" or filtered. T0547 434 :DEVQE 1szwA 246 :RRVND T0547 440 :YLV 1szwA 252 :ELM Number of specific fragments extracted= 2 number of extra gaps= 1 total=101150 # 1ewfA.434.306 read from T0547.t06.many.frag # found chain 1ewfA in training set T0547 434 :DEVQERYLV 1ewfA 307 :KKFPNMKIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=101151 # 1j3wA.434.85 read from T0547.t06.many.frag # found chain 1j3wA in training set Warning: unaligning (T0547)D434 (1j3wA)V86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E435 (1j3wA)H87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1j3wA)R91 because G (3-10) conformation "forbidden" or filtered. T0547 436 :VQE 1j3wA 88 :QGE T0547 440 :YLV 1j3wA 92 :MGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=101153 # 1gesA.434.360 read from T0547.t06.many.frag # found chain 1gesA in template set T0547 434 :DEVQERYLV 1gesA 361 :EQYGDDQVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101154 # 1d5tA.434.259 read from T0547.t06.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)E438 (1d5tA)N262 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1d5tA)G263 because T (delta_L) conformation "forbidden" or filtered. T0547 434 :DEVQ 1d5tA 258 :IIME T0547 440 :YLV 1d5tA 264 :KVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=101156 # 2axoA.434.226 read from T0547.t06.many.frag # found chain 2axoA in training set Warning: unaligning (T0547)L441 (2axoA)C234 because Y (epsilon') conformation "forbidden" or filtered. T0547 434 :DEVQERY 2axoA 227 :AKVKKGG T0547 442 :V 2axoA 235 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=101158 # 1zjcA.434.287 read from T0547.t06.many.frag # found chain 1zjcA in training set Warning: unaligning (T0547)E438 (1zjcA)D289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1zjcA)G290 because T (delta_L) conformation "forbidden" or filtered. T0547 434 :DEVQ 1zjcA 285 :LMFK T0547 440 :YLV 1zjcA 291 :EII Number of specific fragments extracted= 2 number of extra gaps= 1 total=101160 # 2bj0A.434.102 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)R439 (2bj0A)G108 because T (delta_L) conformation "forbidden" or filtered. T0547 434 :DEVQE 2bj0A 103 :VVSKD T0547 440 :YLV 2bj0A 109 :SVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=101162 # 1g1kA.434.66 read from T0547.t06.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)D434 (1g1kA)S68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1g1kA)G73 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1g1kA)G73 T0547 435 :EVQ 1g1kA 69 :SAS T0547 440 :YLV 1g1kA 74 :TIS Number of specific fragments extracted= 2 number of extra gaps= 2 total=101164 # 1xffA.434.203 read from T0547.t06.many.frag # found chain 1xffA in training set Warning: unaligning (T0547)E435 (1xffA)F205 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1xffA)G209 because T (delta_L) conformation "forbidden" or filtered. T0547 434 :D 1xffA 204 :I T0547 436 :VQE 1xffA 206 :LEE T0547 440 :YLV 1xffA 210 :DIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=101167 # 1dzfA.434.187 read from T0547.t06.many.frag # found chain 1dzfA in template set Warning: unaligning (T0547)E435 (1dzfA)G189 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1dzfA)G193 because T (delta_L) conformation "forbidden" or filtered. T0547 434 :D 1dzfA 188 :L T0547 436 :VQE 1dzfA 190 :LKR T0547 440 :YLV 1dzfA 194 :EVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=101170 # 1cczA.434.27 read from T0547.t06.many.frag # found chain 1cczA in training set Warning: unaligning (T0547)R439 (1cczA)D33 because P (beta_P) conformation "forbidden" or filtered. T0547 434 :DEVQE 1cczA 28 :WKKQK T0547 440 :YLV 1cczA 34 :KVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=101172 # 1ry9A.435.57 read from T0547.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0547)E435 (1ry9A)A46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (1ry9A)N49 because L (left) conformation "forbidden" or filtered. T0547 436 :VQ 1ry9A 47 :LV T0547 439 :RYLVN 1ry9A 50 :EQVML Number of specific fragments extracted= 2 number of extra gaps= 2 total=101174 # 2c5uA.435.149 read from T0547.t06.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)N443 (2c5uA)N157 because E (beta_S) conformation "forbidden" or filtered. T0547 435 :EVQERYLV 2c5uA 149 :LAEDGFTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=101175 # 1jtgB.435.102 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)Q437 (1jtgB)G105 because S (epsilon) conformation "forbidden" or filtered. T0547 435 :EV 1jtgB 103 :TV T0547 438 :ERYLVN 1jtgB 106 :QGSCTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=101177 # 3seb.435.75 read from T0547.t06.many.frag # found chain 3seb in training set T0547 435 :EVQERYLVN 3seb 76 :KYKDKYVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101178 # 1uv4A.435.189 read from T0547.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)E438 (1uv4A)N193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1uv4A)L198 because E (beta_S) conformation "forbidden" or filtered. T0547 435 :EVQ 1uv4A 190 :TYQ T0547 439 :RYLV 1uv4A 194 :GYYY Number of specific fragments extracted= 2 number of extra gaps= 2 total=101180 # 1gtkA.435.157 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)N443 (1gtkA)A166 because Y (epsilon') conformation "forbidden" or filtered. T0547 435 :EVQERYLV 1gtkA 158 :KLDNGEYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=101181 # 1a8d.435.104 read from T0547.t06.many.frag # found chain 1a8d in training set T0547 435 :EVQERYLVN 1a8d 105 :QYGTNEYSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101182 # 1ylnA.435.83 read from T0547.t06.many.frag # found chain 1ylnA in template set T0547 435 :EVQERYLVN 1ylnA 84 :FFQEGFWMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=101183 # 1g1kA.435.67 read from T0547.t06.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)E435 (1g1kA)S69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1g1kA)G73 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1g1kA)G73 T0547 436 :VQ 1g1kA 70 :AS T0547 440 :YLVN 1g1kA 74 :TISF Number of specific fragments extracted= 2 number of extra gaps= 2 total=101185 # 1umwA.435.49 read from T0547.t06.many.frag # found chain 1umwA in template set T0547 435 :EVQERYLVN 1umwA 416 :DYSDKYGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=101186 # 1w8kA.435.145 read from T0547.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0547)E435 (1w8kA)D186 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1w8kA)K190 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1w8kA)M194 because P (beta_P) conformation "forbidden" or filtered. T0547 436 :VQE 1w8kA 187 :EKE T0547 440 :YLV 1w8kA 191 :TCH Number of specific fragments extracted= 2 number of extra gaps= 3 total=101188 # 1xeaA.435.190 read from T0547.t06.many.frag # found chain 1xeaA in template set T0547 435 :EVQERYLVN 1xeaA 191 :HMSEGLLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=101189 # 1uhvA.435.371 read from T0547.t06.many.frag # found chain 1uhvA in template set T0547 435 :EVQERYLVN 1uhvA 372 :RRDDGSVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101190 1i31A expands to /projects/compbio/data/pdb/1i31.pdb.gz 1i31A:# 1i31A.435.144 read from T0547.t06.many.frag # adding 1i31A to template set # found chain 1i31A in template set Warning: unaligning (T0547)L441 (1i31A)F272 because Y (epsilon') conformation "forbidden" or filtered. T0547 435 :EVQERY 1i31A 266 :IPPDGE T0547 442 :VN 1i31A 273 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=101192 # 2blnA.435.233 read from T0547.t06.many.frag # found chain 2blnA in training set T0547 435 :EVQERYLVN 2blnA 234 :YVGNQKFTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101193 # 1h2wA.435.239 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)R439 (1h2wA)G244 because T (delta_L) conformation "forbidden" or filtered. T0547 435 :EVQE 1h2wA 240 :LSDD T0547 440 :YLVN 1h2wA 245 :RYVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=101195 # 1wlgA.435.130 read from T0547.t06.many.frag # found chain 1wlgA in training set T0547 435 :EVQERYLVN 1wlgA 201 :KTKDNEWAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101196 # 1w5rA.435.214 read from T0547.t06.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)E435 (1w5rA)V212 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1w5rA)N220 because E (beta_S) conformation "forbidden" or filtered. T0547 436 :VQERYLV 1w5rA 213 :VTDDARY Number of specific fragments extracted= 1 number of extra gaps= 2 total=101197 # 1h16A.435.547 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)R439 (1h16A)G552 because T (delta_L) conformation "forbidden" or filtered. T0547 435 :EVQE 1h16A 548 :RDED T0547 440 :YLVN 1h16A 553 :LAID Number of specific fragments extracted= 2 number of extra gaps= 1 total=101199 # 1ng0A.435.146 read from T0547.t06.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)R439 (1ng0A)S151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L441 (1ng0A)S153 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1ng0A)T155 because Y (epsilon') conformation "forbidden" or filtered. T0547 435 :EVQE 1ng0A 147 :TMAS T0547 440 :Y 1ng0A 152 :T T0547 442 :V 1ng0A 154 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=101202 # 1d5tA.435.260 read from T0547.t06.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)E438 (1d5tA)N262 because L (left) conformation "forbidden" or filtered. T0547 435 :EVQ 1d5tA 259 :IME T0547 439 :RYLVN 1d5tA 263 :GKVVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=101204 # 1ewfA.435.307 read from T0547.t06.many.frag # found chain 1ewfA in training set Warning: unaligning (T0547)E438 (1ewfA)N311 because L (left) conformation "forbidden" or filtered. T0547 435 :EVQ 1ewfA 308 :KFP T0547 439 :RYLVN 1ewfA 312 :MKIQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=101206 1vmoA expands to /projects/compbio/data/pdb/1vmo.pdb.gz 1vmoA:# 1vmoA.435.77 read from T0547.t06.many.frag # adding 1vmoA to template set # found chain 1vmoA in template set T0547 435 :EVQERYLVN 1vmoA 78 :VCPTGYLVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101207 # 1dzfA.435.188 read from T0547.t06.many.frag # found chain 1dzfA in template set T0547 435 :EVQERYLVN 1dzfA 189 :GLKRGEVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101208 # 1n9pA.435.38 read from T0547.t06.many.frag # found chain 1n9pA in training set Warning: unaligning (T0547)E438 (1n9pA)D206 because L (left) conformation "forbidden" or filtered. T0547 435 :EVQ 1n9pA 203 :SMR T0547 439 :RYLVN 1n9pA 207 :GKLTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=101210 # 1kyqA.435.154 read from T0547.t06.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)N443 (1kyqA)L163 because E (beta_S) conformation "forbidden" or filtered. T0547 435 :EVQERYLV 1kyqA 155 :EIGDRLQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=101211 # 1sjwA.435.109 read from T0547.t06.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)E435 (1sjwA)R110 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (1sjwA)D113 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1sjwA)G114 because T (delta_L) conformation "forbidden" or filtered. T0547 436 :VQ 1sjwA 111 :IV T0547 440 :YLVN 1sjwA 115 :KIRD Number of specific fragments extracted= 2 number of extra gaps= 2 total=101213 # 1k3sA.435.33 read from T0547.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0547)N443 (1k3sA)M42 because P (beta_P) conformation "forbidden" or filtered. T0547 435 :EVQERYLV 1k3sA 34 :NESDHTLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=101214 # 1g8mA.435.356 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)Q437 (1g8mA)K359 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (1g8mA)N360 because L (left) conformation "forbidden" or filtered. T0547 435 :EV 1g8mA 357 :KK T0547 439 :RYLVN 1g8mA 361 :GGYCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=101216 # 2biwA.435.308 read from T0547.t06.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)E435 (2biwA)F309 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q437 (2biwA)E311 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (2biwA)N312 because L (left) conformation "forbidden" or filtered. T0547 436 :V 2biwA 310 :E T0547 439 :RYLVN 2biwA 313 :GKIIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=101218 # 1ry9A.436.58 read from T0547.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0547)E438 (1ry9A)N49 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1ry9A)E50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1ry9A)L54 because E (beta_S) conformation "forbidden" or filtered. T0547 436 :VQ 1ry9A 47 :LV T0547 440 :YLV 1ry9A 51 :QVM T0547 444 :F 1ry9A 55 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=101221 # 2c5uA.436.150 read from T0547.t06.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)R439 (2c5uA)G153 because T (delta_L) conformation "forbidden" or filtered. T0547 436 :VQE 2c5uA 150 :AED T0547 440 :YLVNF 2c5uA 154 :FTANF Number of specific fragments extracted= 2 number of extra gaps= 1 total=101223 # 3seb.436.76 read from T0547.t06.many.frag # found chain 3seb in training set Warning: unaligning (T0547)E438 (3seb)D79 because T (delta_L) conformation "forbidden" or filtered. T0547 436 :VQ 3seb 77 :YK T0547 439 :RYLVNF 3seb 80 :KYVDVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=101225 # 1uv4A.436.190 read from T0547.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)E438 (1uv4A)N193 because L (left) conformation "forbidden" or filtered. T0547 436 :VQ 1uv4A 191 :YQ T0547 439 :RYLVNF 1uv4A 194 :GYYYLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=101227 # 1jtgB.436.103 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)Q437 (1jtgB)G105 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1jtgB)T111 because P (beta_P) conformation "forbidden" or filtered. T0547 436 :V 1jtgB 104 :V T0547 438 :ERYLV 1jtgB 106 :QGSCT T0547 444 :F 1jtgB 112 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=101230 # 1uhvA.436.372 read from T0547.t06.many.frag # found chain 1uhvA in template set T0547 436 :VQERYLVNF 1uhvA 373 :RDDGSVALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101231 # 1k3sA.436.34 read from T0547.t06.many.frag # found chain 1k3sA in template set T0547 436 :VQERYLVNF 1k3sA 35 :ESDHTLEMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=101232 # 1wlgA.436.131 read from T0547.t06.many.frag # found chain 1wlgA in training set Warning: unaligning (T0547)Q437 (1wlgA)K203 because Y (epsilon') conformation "forbidden" or filtered. T0547 436 :V 1wlgA 202 :T T0547 438 :ERYLVNF 1wlgA 204 :DNEWAVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=101234 # 1ylnA.436.84 read from T0547.t06.many.frag # found chain 1ylnA in template set T0547 436 :VQERYLVNF 1ylnA 85 :FQEGFWMNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101235 # 1g1kA.436.68 read from T0547.t06.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)E438 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1g1kA)G73 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1g1kA)G73 T0547 436 :VQ 1g1kA 70 :AS T0547 440 :YLVNF 1g1kA 74 :TISFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=101237 # 1h2wA.436.240 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)R439 (1h2wA)G244 because T (delta_L) conformation "forbidden" or filtered. T0547 436 :VQE 1h2wA 241 :SDD T0547 440 :YLVNF 1h2wA 245 :RYVLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=101239 # 1a8d.436.105 read from T0547.t06.many.frag # found chain 1a8d in training set T0547 436 :VQERYLVNF 1a8d 106 :YGTNEYSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=101240 # 1n9pA.436.39 read from T0547.t06.many.frag # found chain 1n9pA in training set Warning: unaligning (T0547)E438 (1n9pA)D206 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1n9pA)G207 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1n9pA)L211 because P (beta_P) conformation "forbidden" or filtered. T0547 436 :VQ 1n9pA 204 :MR T0547 440 :YLV 1n9pA 208 :KLT T0547 444 :F 1n9pA 212 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=101243 # 1i31A.436.145 read from T0547.t06.many.frag # found chain 1i31A in template set Warning: unaligning (T0547)L441 (1i31A)F272 because Y (epsilon') conformation "forbidden" or filtered. T0547 436 :VQERY 1i31A 267 :PPDGE T0547 442 :VNF 1i31A 273 :ELM Number of specific fragments extracted= 2 number of extra gaps= 1 total=101245 # 1yfuA.436.99 read from T0547.t06.many.frag # found chain 1yfuA in template set Warning: unaligning (T0547)R439 (1yfuA)G103 because T (delta_L) conformation "forbidden" or filtered. T0547 436 :VQE 1yfuA 100 :PEA T0547 440 :YLVNF 1yfuA 104 :SACLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=101247 # 1w5rA.436.215 read from T0547.t06.many.frag # found chain 1w5rA in training set T0547 436 :VQERYLVNF 1w5rA 213 :VTDDARYNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101248 # 1h16A.436.548 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)V442 (1h16A)I555 because G (3-10) conformation "forbidden" or filtered. T0547 436 :VQERYL 1h16A 549 :DEDGLA T0547 443 :NF 1h16A 556 :DF Number of specific fragments extracted= 2 number of extra gaps= 1 total=101250 # 1umwA.436.50 read from T0547.t06.many.frag # found chain 1umwA in template set Warning: unaligning (T0547)L441 (1umwA)G422 because Y (epsilon') conformation "forbidden" or filtered. T0547 436 :VQERY 1umwA 417 :YSDKY T0547 442 :VNF 1umwA 423 :LGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=101252 # 1vmoA.436.78 read from T0547.t06.many.frag # found chain 1vmoA in template set T0547 436 :VQERYLVNF 1vmoA 79 :CPTGYLVSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=101253 # 1stfI.436.58 read from T0547.t06.many.frag # found chain 1stfI in template set Warning: unaligning (T0547)V436 because of BadResidue code BAD_PEPTIDE at template residue (1stfI)V66 Warning: unaligning (T0547)Q437 because of BadResidue code BAD_PEPTIDE at template residue (1stfI)G67 T0547 438 :ERYLVNF 1stfI 68 :DEDFVHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=101254 # 1knwA.436.396 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E438 (1knwA)N399 because L (left) conformation "forbidden" or filtered. T0547 436 :VQ 1knwA 397 :FD T0547 439 :RYLVNF 1knwA 400 :GQARLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=101256 # 1w0pA.436.298 read from T0547.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)R439 (1w0pA)N302 because L (left) conformation "forbidden" or filtered. T0547 436 :VQE 1w0pA 299 :PSS T0547 440 :YLVNF 1w0pA 303 :TVLVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=101258 # 2bbkL.436.57 read from T0547.t06.many.frag # found chain 2bbkL in template set Warning: unaligning (T0547)R439 (2bbkL)G67 because L (left) conformation "forbidden" or filtered. T0547 436 :VQE 2bbkL 64 :PTD T0547 440 :YLVNF 2bbkL 68 :QSYLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=101260 # 1xeaA.436.191 read from T0547.t06.many.frag # found chain 1xeaA in template set T0547 436 :VQERYLVNF 1xeaA 192 :MSEGLLARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101261 # 1v3eA.436.118 read from T0547.t06.many.frag # found chain 1v3eA in template set T0547 436 :VQERYLVNF 1v3eA 260 :LLNTDVYQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101262 # 1dzfA.436.189 read from T0547.t06.many.frag # found chain 1dzfA in template set T0547 436 :VQERYLVNF 1dzfA 190 :LKRGEVVKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101263 # 1v04A.436.57 read from T0547.t06.many.frag # found chain 1v04A in template set T0547 436 :VQERYLVNF 1v04A 58 :LPNGLAFIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101264 # 1g8mA.436.357 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)Q437 (1g8mA)K359 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1g8mA)G361 because T (delta_L) conformation "forbidden" or filtered. T0547 436 :V 1g8mA 358 :K T0547 438 :E 1g8mA 360 :N T0547 440 :YLVNF 1g8mA 362 :GYCVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=101267 # 2biwA.436.309 read from T0547.t06.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)E438 (2biwA)N312 because L (left) conformation "forbidden" or filtered. T0547 436 :VQ 2biwA 310 :EE T0547 439 :RYLVNF 2biwA 313 :GKIILD Number of specific fragments extracted= 2 number of extra gaps= 1 total=101269 # 1p3dA.436.334 read from T0547.t06.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)R439 (1p3dA)G338 because Y (epsilon') conformation "forbidden" or filtered. T0547 436 :VQE 1p3dA 335 :RPN T0547 440 :YLVNF 1p3dA 339 :KVRLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=101271 # 1ry9A.437.59 read from T0547.t06.many.frag # found chain 1ry9A in template set T0547 437 :QERYLVNFS 1ry9A 48 :VNEQVMLWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101272 # 1k3sA.437.35 read from T0547.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0547)Q437 (1k3sA)S36 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :ERYLVNFS 1k3sA 37 :DHTLEMCC Number of specific fragments extracted= 1 number of extra gaps= 1 total=101273 # 1uhvA.437.373 read from T0547.t06.many.frag # found chain 1uhvA in template set T0547 437 :QERYLVNFS 1uhvA 374 :DDGSVALIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101274 # 1stfI.437.59 read from T0547.t06.many.frag # found chain 1stfI in template set Warning: unaligning (T0547)Q437 because of BadResidue code BAD_PEPTIDE at template residue (1stfI)G67 T0547 438 :ERYLVNFS 1stfI 68 :DEDFVHLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=101275 # 1yfuA.437.100 read from T0547.t06.many.frag # found chain 1yfuA in template set Warning: unaligning (T0547)R439 (1yfuA)G103 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1yfuA)L107 because P (beta_P) conformation "forbidden" or filtered. T0547 437 :QE 1yfuA 101 :EA T0547 440 :YLV 1yfuA 104 :SAC T0547 444 :FS 1yfuA 108 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=101278 # 1uv4A.437.191 read from T0547.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)R439 (1uv4A)G194 because T (delta_L) conformation "forbidden" or filtered. T0547 437 :QE 1uv4A 192 :QN T0547 440 :YLVNFS 1uv4A 195 :YYYLMV Number of specific fragments extracted= 2 number of extra gaps= 1 total=101280 # 1v3eA.437.119 read from T0547.t06.many.frag # found chain 1v3eA in template set Warning: unaligning (T0547)E438 (1v3eA)N262 because S (epsilon) conformation "forbidden" or filtered. T0547 437 :Q 1v3eA 261 :L T0547 439 :RYLVNFS 1v3eA 263 :TDVYQLC Number of specific fragments extracted= 2 number of extra gaps= 1 total=101282 # 1g1kA.437.69 read from T0547.t06.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)E438 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1g1kA)G73 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1g1kA)G73 T0547 437 :Q 1g1kA 71 :S T0547 440 :YLVNFS 1g1kA 74 :TISFLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=101284 # 1i31A.437.146 read from T0547.t06.many.frag # found chain 1i31A in template set Warning: unaligning (T0547)L441 (1i31A)F272 because Y (epsilon') conformation "forbidden" or filtered. T0547 437 :QERY 1i31A 268 :PDGE T0547 442 :VNFS 1i31A 273 :ELMR Number of specific fragments extracted= 2 number of extra gaps= 1 total=101286 # 1lyqA.437.62 read from T0547.t06.many.frag # found chain 1lyqA in training set T0547 437 :QERYLVNFS 1lyqA 63 :ADPKSMVII Number of specific fragments extracted= 1 number of extra gaps= 0 total=101287 # 1wlgA.437.132 read from T0547.t06.many.frag # found chain 1wlgA in training set Warning: unaligning (T0547)Q437 (1wlgA)K203 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :ERYLVNFS 1wlgA 204 :DNEWAVYT Number of specific fragments extracted= 1 number of extra gaps= 1 total=101288 # 1sqwA.437.136 read from T0547.t06.many.frag # found chain 1sqwA in template set T0547 437 :QERYLVNFS 1sqwA 137 :ADIPLGFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101289 # 2c5uA.437.151 read from T0547.t06.many.frag # found chain 2c5uA in template set T0547 437 :QERYLVNFS 2c5uA 151 :EDGFTANFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101290 # 1ylnA.437.85 read from T0547.t06.many.frag # found chain 1ylnA in template set Warning: unaligning (T0547)N443 (1ylnA)N92 because E (beta_S) conformation "forbidden" or filtered. T0547 437 :QERYLV 1ylnA 86 :QEGFWM T0547 444 :FS 1ylnA 93 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=101292 # 1arb.437.109 read from T0547.t06.many.frag # found chain 1arb in training set Warning: unaligning (T0547)R439 (1arb)S112 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y440 (1arb)D113 because L (left) conformation "forbidden" or filtered. T0547 437 :QE 1arb 110 :AT T0547 441 :LVNFS 1arb 114 :FTLLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=101294 # 1knwA.437.397 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 437 :QERYLVNFS 1knwA 398 :DNGQARLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=101295 # 1vmoA.437.79 read from T0547.t06.many.frag # found chain 1vmoA in template set T0547 437 :QERYLVNFS 1vmoA 80 :PTGYLVSFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101296 # 1n9pA.437.40 read from T0547.t06.many.frag # found chain 1n9pA in training set Warning: unaligning (T0547)Q437 (1n9pA)R205 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E438 (1n9pA)D206 because L (left) conformation "forbidden" or filtered. T0547 439 :RYLVNFS 1n9pA 207 :GKLTLMF Number of specific fragments extracted= 1 number of extra gaps= 1 total=101297 # 1a8d.437.106 read from T0547.t06.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)N443 (1a8d)I113 because G (3-10) conformation "forbidden" or filtered. T0547 437 :QERYLV 1a8d 107 :GTNEYS T0547 444 :FS 1a8d 114 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=101299 # 3seb.437.77 read from T0547.t06.many.frag # found chain 3seb in training set Warning: unaligning (T0547)S445 (3seb)G86 because Y (epsilon') conformation "forbidden" or filtered. T0547 437 :QERYLVNF 3seb 78 :KDKYVDVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=101300 # 1h2wA.437.241 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)R439 (1h2wA)G244 because T (delta_L) conformation "forbidden" or filtered. T0547 437 :QE 1h2wA 242 :DD T0547 440 :YLVNFS 1h2wA 245 :RYVLLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=101302 # 1h16A.437.549 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)N443 (1h16A)D556 because Y (epsilon') conformation "forbidden" or filtered. T0547 437 :QERYLV 1h16A 550 :EDGLAI T0547 444 :FS 1h16A 557 :FE Number of specific fragments extracted= 2 number of extra gaps= 1 total=101304 # 1r0vA.437.123 read from T0547.t06.many.frag # found chain 1r0vA in template set T0547 437 :QERYLVNFS 1r0vA 124 :EESEITYFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=101305 # 1uv4A.437.80 read from T0547.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)E438 (1uv4A)N82 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1uv4A)G83 because T (delta_L) conformation "forbidden" or filtered. T0547 437 :Q 1uv4A 81 :Y T0547 440 :YLVNFS 1uv4A 84 :KYWLYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=101307 # 1qouA.437.65 read from T0547.t06.many.frag # found chain 1qouA in template set T0547 437 :QERYLVNFS 1qouA 60 :MRSFFTLIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=101308 # 1p3dA.437.335 read from T0547.t06.many.frag # found chain 1p3dA in training set T0547 437 :QERYLVNFS 1p3dA 336 :PNGKVRLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=101309 # 1jtgB.437.104 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)Q437 (1jtgB)G105 because S (epsilon) conformation "forbidden" or filtered. T0547 438 :ERYLVNFS 1jtgB 106 :QGSCTTWS Number of specific fragments extracted= 1 number of extra gaps= 1 total=101310 # 1w5rA.437.216 read from T0547.t06.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)N443 (1w5rA)N220 because E (beta_S) conformation "forbidden" or filtered. T0547 437 :QERYLV 1w5rA 214 :TDDARY T0547 444 :FS 1w5rA 221 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=101312 # 2fh5A.437.68 read from T0547.t06.many.frag # found chain 2fh5A in template set Warning: unaligning (T0547)Y440 (2fh5A)E63 because L (left) conformation "forbidden" or filtered. T0547 437 :QER 2fh5A 60 :NQF T0547 441 :LVNFS 2fh5A 64 :LVFVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=101314 # 1qxmA.437.67 read from T0547.t06.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)R439 (1qxmA)K56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y440 (1qxmA)Q57 because L (left) conformation "forbidden" or filtered. T0547 437 :QE 1qxmA 54 :TN T0547 441 :LVNFS 1qxmA 58 :AYKIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=101316 # 1ry9A.438.60 read from T0547.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0547)E438 (1ry9A)N49 because L (left) conformation "forbidden" or filtered. T0547 439 :RYLVNFSL 1ry9A 50 :EQVMLWAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=101317 # 1knwA.438.398 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)E438 (1knwA)N399 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1knwA)G400 because T (delta_L) conformation "forbidden" or filtered. T0547 440 :YLVNFSL 1knwA 401 :QARLIRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=101318 # 1v3eA.438.120 read from T0547.t06.many.frag # found chain 1v3eA in template set Warning: unaligning (T0547)E438 (1v3eA)N262 because S (epsilon) conformation "forbidden" or filtered. T0547 439 :RYLVNFSL 1v3eA 263 :TDVYQLCS Number of specific fragments extracted= 1 number of extra gaps= 1 total=101319 # 1stfI.438.60 read from T0547.t06.many.frag # found chain 1stfI in template set T0547 438 :ERYLVNFSL 1stfI 68 :DEDFVHLRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101320 # 1k3sA.438.36 read from T0547.t06.many.frag # found chain 1k3sA in template set T0547 438 :ERYLVNFSL 1k3sA 37 :DHTLEMCCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=101321 # 1vmoA.438.80 read from T0547.t06.many.frag # found chain 1vmoA in template set T0547 438 :ERYLVNFSL 1vmoA 81 :TGYLVSFSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101322 # 1uv4A.438.192 read from T0547.t06.many.frag # found chain 1uv4A in training set T0547 438 :ERYLVNFSL 1uv4A 193 :NGYYYLMVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101323 # 1lyqA.438.63 read from T0547.t06.many.frag # found chain 1lyqA in training set Warning: unaligning (T0547)E438 (1lyqA)D64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R439 (1lyqA)P65 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1lyqA)V69 because E (beta_S) conformation "forbidden" or filtered. T0547 440 :YLV 1lyqA 66 :KSM T0547 444 :FSL 1lyqA 70 :IIP Number of specific fragments extracted= 2 number of extra gaps= 2 total=101325 # 1h16A.438.550 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)N443 (1h16A)D556 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :ERYLV 1h16A 551 :DGLAI T0547 444 :FSL 1h16A 557 :FEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=101327 # 1g1kA.438.70 read from T0547.t06.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)E438 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1g1kA)G73 Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1g1kA)G73 T0547 440 :YLVNFSL 1g1kA 74 :TISFLFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=101328 # 1arb.438.110 read from T0547.t06.many.frag # found chain 1arb in training set T0547 438 :ERYLVNFSL 1arb 111 :TSDFTLLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101329 # 1ylnA.438.86 read from T0547.t06.many.frag # found chain 1ylnA in template set Warning: unaligning (T0547)V442 (1ylnA)M91 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :ERYL 1ylnA 87 :EGFW T0547 443 :NFSL 1ylnA 92 :NIRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=101331 # 1h2wA.438.242 read from T0547.t06.many.frag # found chain 1h2wA in training set T0547 438 :ERYLVNFSL 1h2wA 243 :DGRYVLLSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101332 # 1wlgA.438.133 read from T0547.t06.many.frag # found chain 1wlgA in training set Warning: unaligning (T0547)R439 (1wlgA)N205 because T (delta_L) conformation "forbidden" or filtered. T0547 438 :E 1wlgA 204 :D T0547 440 :YLVNFSL 1wlgA 206 :EWAVYTH Number of specific fragments extracted= 2 number of extra gaps= 1 total=101334 # 1i31A.438.147 read from T0547.t06.many.frag # found chain 1i31A in template set Warning: unaligning (T0547)R439 (1i31A)G270 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)L441 (1i31A)F272 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :E 1i31A 269 :D T0547 440 :Y 1i31A 271 :E T0547 442 :VNFSL 1i31A 273 :ELMRY Number of specific fragments extracted= 3 number of extra gaps= 2 total=101337 # 1yfuA.438.101 read from T0547.t06.many.frag # found chain 1yfuA in template set Warning: unaligning (T0547)R439 (1yfuA)G103 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L446 (1yfuA)E110 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :E 1yfuA 102 :A T0547 440 :YLVNFS 1yfuA 104 :SACLVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=101339 # 1sqwA.438.137 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)E438 (1sqwA)D138 because L (left) conformation "forbidden" or filtered. T0547 439 :RYLVNFSL 1sqwA 139 :IPLGFGVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=101340 1v0aA expands to /projects/compbio/data/pdb/1v0a.pdb.gz 1v0aA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1v0aA.438.37 read from T0547.t06.many.frag # adding 1v0aA to template set # found chain 1v0aA in template set Warning: unaligning (T0547)L441 (1v0aA)G41 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :ERY 1v0aA 38 :TGN T0547 442 :VNFSL 1v0aA 42 :MEVSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=101342 # 1r0vA.438.124 read from T0547.t06.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)R439 (1r0vA)S126 because L (left) conformation "forbidden" or filtered. T0547 438 :E 1r0vA 125 :E T0547 440 :YLVNFSL 1r0vA 127 :EITYFRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=101344 # 1qxmA.438.68 read from T0547.t06.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)Y440 (1qxmA)Q57 because L (left) conformation "forbidden" or filtered. T0547 438 :ER 1qxmA 55 :NK T0547 441 :LVNFSL 1qxmA 58 :AYKIKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=101346 # 1p3dA.438.336 read from T0547.t06.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)R439 (1p3dA)G338 because Y (epsilon') conformation "forbidden" or filtered. T0547 438 :E 1p3dA 337 :N T0547 440 :YLVNFSL 1p3dA 339 :KVRLVDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=101348 # 1a8d.438.107 read from T0547.t06.many.frag # found chain 1a8d in training set T0547 438 :ERYLVNFSL 1a8d 108 :TNEYSIISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101349 # 1n9pA.438.41 read from T0547.t06.many.frag # found chain 1n9pA in training set Warning: unaligning (T0547)R439 (1n9pA)G207 because T (delta_L) conformation "forbidden" or filtered. T0547 438 :E 1n9pA 206 :D T0547 440 :YLVNFSL 1n9pA 208 :KLTLMFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=101351 # 2c5uA.438.152 read from T0547.t06.many.frag # found chain 2c5uA in template set T0547 438 :ERYLVNFSL 2c5uA 152 :DGFTANFEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=101352 # 1uhvA.438.374 read from T0547.t06.many.frag # found chain 1uhvA in template set Warning: unaligning (T0547)R439 (1uhvA)G376 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1uhvA)L380 because E (beta_S) conformation "forbidden" or filtered. T0547 438 :E 1uhvA 375 :D T0547 440 :YLV 1uhvA 377 :SVA T0547 444 :FSL 1uhvA 381 :IAW Number of specific fragments extracted= 3 number of extra gaps= 2 total=101355 # 1uv4A.438.81 read from T0547.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)E438 (1uv4A)N82 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1uv4A)Y89 because Y (epsilon') conformation "forbidden" or filtered. T0547 439 :RYLVNF 1uv4A 83 :GKYWLY T0547 446 :L 1uv4A 90 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=101357 # 1s4cA.438.42 read from T0547.t06.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)E438 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1s4cA)D43 T0547 439 :RYLVNFSL 1s4cA 44 :QIYMNVME Number of specific fragments extracted= 1 number of extra gaps= 1 total=101358 # 1w0pA.438.300 read from T0547.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)R439 (1w0pA)N302 because L (left) conformation "forbidden" or filtered. T0547 438 :E 1w0pA 301 :S T0547 440 :YLVNFSL 1w0pA 303 :TVLVSYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=101360 # 1sjwA.438.112 read from T0547.t06.many.frag # found chain 1sjwA in training set Warning: unaligning (T0547)E438 (1sjwA)D113 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1sjwA)D118 because E (beta_S) conformation "forbidden" or filtered. T0547 439 :RYLV 1sjwA 114 :GKIR T0547 444 :FSL 1sjwA 119 :HRD Number of specific fragments extracted= 2 number of extra gaps= 2 total=101362 # 1utcA.438.223 read from T0547.t06.many.frag # found chain 1utcA in template set T0547 438 :ERYLVNFSL 1utcA 224 :AGGKLHIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101363 # 1ry9A.439.61 read from T0547.t06.many.frag # found chain 1ry9A in template set T0547 439 :RYLVNFSLF 1ry9A 50 :EQVMLWANF Number of specific fragments extracted= 1 number of extra gaps= 0 total=101364 # 1knwA.439.399 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 439 :RYLVNFSLF 1knwA 400 :GQARLIRRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=101365 # 1vmoA.439.81 read from T0547.t06.many.frag # found chain 1vmoA in template set T0547 439 :RYLVNFSLF 1vmoA 82 :GYLVSFSLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=101366 # 1uv4A.439.193 read from T0547.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)R439 (1uv4A)G194 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1uv4A)L198 because E (beta_S) conformation "forbidden" or filtered. T0547 440 :YLV 1uv4A 195 :YYY T0547 444 :FSLF 1uv4A 199 :MVSF Number of specific fragments extracted= 2 number of extra gaps= 2 total=101368 # 1v3eA.439.121 read from T0547.t06.many.frag # found chain 1v3eA in template set T0547 439 :RYLVNFSLF 1v3eA 263 :TDVYQLCST Number of specific fragments extracted= 1 number of extra gaps= 0 total=101369 # 1h16A.439.551 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)R439 (1h16A)G552 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)V442 (1h16A)I555 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1h16A)D556 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YL 1h16A 553 :LA T0547 444 :FSLF 1h16A 557 :FEIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=101371 # 1ylnA.439.87 read from T0547.t06.many.frag # found chain 1ylnA in template set Warning: unaligning (T0547)R439 (1ylnA)G88 because T (delta_L) conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1ylnA 89 :FWMNIRAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=101372 # 1stfI.439.61 read from T0547.t06.many.frag # found chain 1stfI in template set T0547 439 :RYLVNFSLF 1stfI 92 :EDFVHLRVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=101373 # 1lyqA.439.64 read from T0547.t06.many.frag # found chain 1lyqA in training set T0547 439 :RYLVNFSLF 1lyqA 65 :PKSMVIIPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=101374 # 1k3sA.439.37 read from T0547.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0547)S445 (1k3sA)C44 because D (zeta) conformation "forbidden" or filtered. T0547 439 :RYLVNF 1k3sA 38 :HTLEMC T0547 446 :LF 1k3sA 45 :PF Number of specific fragments extracted= 2 number of extra gaps= 1 total=101376 # 1g1kA.439.71 read from T0547.t06.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)R439 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1g1kA)G73 T0547 440 :YLVNFSLF 1g1kA 74 :TISFLFLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=101377 # 1i31A.439.148 read from T0547.t06.many.frag # found chain 1i31A in template set Warning: unaligning (T0547)L441 (1i31A)F272 because Y (epsilon') conformation "forbidden" or filtered. T0547 439 :RY 1i31A 270 :GE T0547 442 :VNFSLF 1i31A 273 :ELMRYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=101379 # 1r0vA.439.125 read from T0547.t06.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)R439 (1r0vA)S126 because L (left) conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1r0vA 127 :EITYFRVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=101380 # 1sqwA.439.138 read from T0547.t06.many.frag # found chain 1sqwA in template set T0547 439 :RYLVNFSLF 1sqwA 139 :IPLGFGVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101381 # 1p3dA.439.337 read from T0547.t06.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)R439 (1p3dA)G338 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1p3dA)D344 because P (beta_P) conformation "forbidden" or filtered. T0547 440 :YLVNF 1p3dA 339 :KVRLV T0547 446 :LF 1p3dA 345 :DY Number of specific fragments extracted= 2 number of extra gaps= 2 total=101383 # 1v0aA.439.38 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)N443 (1v0aA)E43 because P (beta_P) conformation "forbidden" or filtered. T0547 439 :RYLV 1v0aA 39 :GNGM T0547 444 :FSLF 1v0aA 44 :VSYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=101385 # 1h2wA.439.243 read from T0547.t06.many.frag # found chain 1h2wA in training set T0547 439 :RYLVNFSLF 1h2wA 244 :GRYVLLSIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=101386 # 1s4cA.439.43 read from T0547.t06.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)N443 (1s4cA)N48 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1s4cA)M50 because Y (epsilon') conformation "forbidden" or filtered. T0547 439 :RYLV 1s4cA 44 :QIYM T0547 444 :F 1s4cA 49 :V T0547 446 :LF 1s4cA 51 :EP Number of specific fragments extracted= 3 number of extra gaps= 2 total=101389 # 1yfuA.439.102 read from T0547.t06.many.frag # found chain 1yfuA in template set Warning: unaligning (T0547)R439 (1yfuA)G103 because T (delta_L) conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1yfuA 104 :SACLVIER Number of specific fragments extracted= 1 number of extra gaps= 1 total=101390 # 1a8d.439.108 read from T0547.t06.many.frag # found chain 1a8d in training set T0547 439 :RYLVNFSLF 1a8d 109 :NEYSIISSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=101391 # 1ng0A.439.150 read from T0547.t06.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)R439 (1ng0A)S151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L441 (1ng0A)S153 because L (left) conformation "forbidden" or filtered. T0547 440 :Y 1ng0A 152 :T T0547 442 :VNFSLF 1ng0A 154 :FTTSNV Number of specific fragments extracted= 2 number of extra gaps= 2 total=101393 # 1utcA.439.224 read from T0547.t06.many.frag # found chain 1utcA in template set T0547 439 :RYLVNFSLF 1utcA 225 :GGKLHIIEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101394 # 1wlgA.439.134 read from T0547.t06.many.frag # found chain 1wlgA in training set Warning: unaligning (T0547)R439 (1wlgA)N205 because T (delta_L) conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1wlgA 206 :EWAVYTHD Number of specific fragments extracted= 1 number of extra gaps= 1 total=101395 # 1w0pA.439.301 read from T0547.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)R439 (1w0pA)N302 because L (left) conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1w0pA 303 :TVLVSYAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=101396 # 1z6fA.439.293 read from T0547.t06.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)N443 (1z6fA)L298 because E (beta_S) conformation "forbidden" or filtered. T0547 439 :RYLV 1z6fA 294 :KDVY T0547 444 :FSLF 1z6fA 299 :TIPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=101398 # 1arb.439.111 read from T0547.t06.many.frag # found chain 1arb in training set T0547 439 :RYLVNFSLF 1arb 112 :SDFTLLELN Number of specific fragments extracted= 1 number of extra gaps= 0 total=101399 # 1wcdJ.439.77 read from T0547.t06.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0547)R439 (1wcdJ)G78 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1wcdJ)Q84 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YLVNF 1wcdJ 79 :NYKFD T0547 446 :LF 1wcdJ 85 :ML Number of specific fragments extracted= 2 number of extra gaps= 2 total=101401 # 1n9pA.439.42 read from T0547.t06.many.frag # found chain 1n9pA in training set T0547 439 :RYLVNFSLF 1n9pA 207 :GKLTLMFRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101402 # 1qxmA.439.69 read from T0547.t06.many.frag # found chain 1qxmA in training set Warning: unaligning (T0547)Y440 (1qxmA)Q57 because L (left) conformation "forbidden" or filtered. T0547 439 :R 1qxmA 56 :K T0547 441 :LVNFSLF 1qxmA 58 :AYKIKVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=101404 # 2bbhA.439.106 read from T0547.t06.many.frag # found chain 2bbhA in template set Warning: unaligning (T0547)Y440 (2bbhA)Y105 because Y (epsilon') conformation "forbidden" or filtered. T0547 439 :R 2bbhA 104 :N T0547 441 :LVNFSLF 2bbhA 106 :VFIVLKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=101406 # 1knwA.440.400 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)N443 (1knwA)L404 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F444 (1knwA)I405 because G (3-10) conformation "forbidden" or filtered. T0547 440 :YLV 1knwA 401 :QAR T0547 445 :SLFQ 1knwA 406 :RRRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=101408 # 1ry9A.440.62 read from T0547.t06.many.frag # found chain 1ry9A in template set T0547 440 :YLVNFSLFQ 1ry9A 51 :QVMLWANFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=101409 # 1lyqA.440.65 read from T0547.t06.many.frag # found chain 1lyqA in training set Warning: unaligning (T0547)Y440 (1lyqA)K66 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1lyqA)V69 because E (beta_S) conformation "forbidden" or filtered. T0547 441 :LV 1lyqA 67 :SM T0547 444 :FSLFQ 1lyqA 70 :IIPRE Number of specific fragments extracted= 2 number of extra gaps= 2 total=101411 # 1uv4A.440.194 read from T0547.t06.many.frag # found chain 1uv4A in training set T0547 440 :YLVNFSLFQ 1uv4A 195 :YYYLMVSFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=101412 # 1s4cA.440.44 read from T0547.t06.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)L441 (1s4cA)Y46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1s4cA)N48 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1s4cA)M50 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :Y 1s4cA 45 :I T0547 442 :V 1s4cA 47 :M T0547 444 :F 1s4cA 49 :V T0547 446 :LFQ 1s4cA 51 :EPE Number of specific fragments extracted= 4 number of extra gaps= 3 total=101416 # 1v3eA.440.122 read from T0547.t06.many.frag # found chain 1v3eA in template set Warning: unaligning (T0547)Q448 (1v3eA)P272 because P (beta_P) conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1v3eA 264 :DVYQLCST Number of specific fragments extracted= 1 number of extra gaps= 1 total=101417 # 1sqwA.440.139 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)Q448 (1sqwA)K148 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1sqwA 140 :PLGFGVAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=101418 # 1ylnA.440.88 read from T0547.t06.many.frag # found chain 1ylnA in template set T0547 440 :YLVNFSLFQ 1ylnA 89 :FWMNIRAIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101419 # 1vmoA.440.82 read from T0547.t06.many.frag # found chain 1vmoA in template set T0547 440 :YLVNFSLFQ 1vmoA 83 :YLVSFSLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101420 # 1v0aA.440.39 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)L441 (1v0aA)G41 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1v0aA)G48 because P (beta_P) conformation "forbidden" or filtered. T0547 440 :Y 1v0aA 40 :N T0547 442 :VNFSLF 1v0aA 42 :MEVSYT Number of specific fragments extracted= 2 number of extra gaps= 2 total=101422 # 1g1kA.440.72 read from T0547.t06.many.frag # found chain 1g1kA in template set T0547 440 :YLVNFSLFQ 1g1kA 74 :TISFLFLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=101423 # 1stfI.440.62 read from T0547.t06.many.frag # found chain 1stfI in template set T0547 440 :YLVNFSLFQ 1stfI 93 :DFVHLRVFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=101424 # 1z6fA.440.294 read from T0547.t06.many.frag # found chain 1z6fA in training set T0547 440 :YLVNFSLFQ 1z6fA 295 :DVYLTIPRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=101425 # 1ng0A.440.151 read from T0547.t06.many.frag # found chain 1ng0A in template set T0547 440 :YLVNFSLFQ 1ng0A 152 :TSFTTSNVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=101426 # 1k3sA.440.38 read from T0547.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0547)N443 (1k3sA)M42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1k3sA)M47 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YLV 1k3sA 39 :TLE T0547 444 :FSLF 1k3sA 43 :CCPF Number of specific fragments extracted= 2 number of extra gaps= 2 total=101428 # 1h2wA.440.244 read from T0547.t06.many.frag # found chain 1h2wA in training set T0547 440 :YLVNFSLFQ 1h2wA 245 :RYVLLSIRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101429 # 1h16A.440.552 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)V442 (1h16A)I555 because G (3-10) conformation "forbidden" or filtered. T0547 440 :YL 1h16A 553 :LA T0547 443 :NFSLFQ 1h16A 556 :DFEIEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=101431 # 1r0vA.440.126 read from T0547.t06.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)F447 (1r0vA)Y134 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YLVNFSL 1r0vA 127 :EITYFRV T0547 448 :Q 1r0vA 135 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=101433 # 1i31A.440.149 read from T0547.t06.many.frag # found chain 1i31A in template set Warning: unaligning (T0547)L441 (1i31A)F272 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L446 (1i31A)Y277 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :Y 1i31A 271 :E T0547 442 :VNFS 1i31A 273 :ELMR T0547 447 :FQ 1i31A 278 :RT Number of specific fragments extracted= 3 number of extra gaps= 2 total=101436 # 1utcA.440.225 read from T0547.t06.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)N443 (1utcA)H229 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1utcA)G234 because S (epsilon) conformation "forbidden" or filtered. T0547 440 :YLV 1utcA 226 :GKL T0547 444 :FSLF 1utcA 230 :IIEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=101438 # 1a8d.440.109 read from T0547.t06.many.frag # found chain 1a8d in training set T0547 440 :YLVNFSLFQ 1a8d 110 :EYSIISSMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101439 # 1p3dA.440.338 read from T0547.t06.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)N443 (1p3dA)L342 because E (beta_S) conformation "forbidden" or filtered. T0547 440 :YLV 1p3dA 339 :KVR T0547 444 :FSLFQ 1p3dA 343 :VDDYG Number of specific fragments extracted= 2 number of extra gaps= 1 total=101441 # 1arb.440.112 read from T0547.t06.many.frag # found chain 1arb in training set Warning: unaligning (T0547)Y440 (1arb)D113 because L (left) conformation "forbidden" or filtered. T0547 441 :LVNFSLFQ 1arb 114 :FTLLELNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=101442 # 1yfuA.440.103 read from T0547.t06.many.frag # found chain 1yfuA in template set Warning: unaligning (T0547)Q448 (1yfuA)Q112 because P (beta_P) conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1yfuA 104 :SACLVIER Number of specific fragments extracted= 1 number of extra gaps= 1 total=101443 # 1svsA.440.193 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 440 :YLVNFSLFQ 1svsA 195 :HFKMFDVGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=101444 # 1w0pA.440.302 read from T0547.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)S445 (1w0pA)Y308 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YLVNF 1w0pA 303 :TVLVS T0547 446 :LFQ 1w0pA 309 :ARW Number of specific fragments extracted= 2 number of extra gaps= 1 total=101446 # 1c8uA.440.176 read from T0547.t06.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)S445 (1c8uA)R183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1c8uA)G186 because Y (epsilon') conformation "forbidden" or filtered. T0547 440 :YLVNF 1c8uA 178 :RQVWI T0547 446 :LF 1c8uA 184 :AN Number of specific fragments extracted= 2 number of extra gaps= 2 total=101448 # 1l8bA.440.31 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 440 :YLVNFSLFQ 1l8bA 59 :NLRLISKFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=101449 # 1kyqA.440.159 read from T0547.t06.many.frag # found chain 1kyqA in template set Warning: unaligning (T0547)Q448 (1kyqA)G168 because L (left) conformation "forbidden" or filtered. T0547 440 :YLVNFSLF 1kyqA 160 :LQILISTN Number of specific fragments extracted= 1 number of extra gaps= 1 total=101450 # 1wlgA.440.135 read from T0547.t06.many.frag # found chain 1wlgA in training set T0547 440 :YLVNFSLFQ 1wlgA 206 :EWAVYTHDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101451 # 1knwA.441.401 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q448 (1knwA)Q409 because P (beta_P) conformation "forbidden" or filtered. T0547 441 :LVNFSLF 1knwA 402 :ARLIRRR T0547 449 :S 1knwA 410 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=101453 # 1ry9A.441.63 read from T0547.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0547)N443 (1ry9A)L54 because E (beta_S) conformation "forbidden" or filtered. T0547 441 :LV 1ry9A 52 :VM T0547 444 :FSLFQS 1ry9A 55 :WANFDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=101455 # 1s4cA.441.45 read from T0547.t06.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)L441 (1s4cA)Y46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1s4cA)M50 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :VNF 1s4cA 47 :MNV T0547 446 :LFQS 1s4cA 51 :EPET Number of specific fragments extracted= 2 number of extra gaps= 2 total=101457 # 1v3eA.441.123 read from T0547.t06.many.frag # found chain 1v3eA in template set T0547 441 :LVNFSLFQS 1v3eA 265 :VYQLCSTPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101458 # 1sqwA.441.140 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)Q448 (1sqwA)K148 because Y (epsilon') conformation "forbidden" or filtered. T0547 441 :LVNFSLF 1sqwA 141 :LGFGVAA T0547 449 :S 1sqwA 149 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=101460 # 1lyqA.441.66 read from T0547.t06.many.frag # found chain 1lyqA in training set Warning: unaligning (T0547)N443 (1lyqA)V69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1lyqA)E74 because Y (epsilon') conformation "forbidden" or filtered. T0547 441 :LV 1lyqA 67 :SM T0547 444 :FSLF 1lyqA 70 :IIPR T0547 449 :S 1lyqA 75 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=101463 # 1v0aA.441.40 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)L441 (1v0aA)G41 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N443 (1v0aA)E43 because P (beta_P) conformation "forbidden" or filtered. T0547 442 :V 1v0aA 42 :M T0547 444 :FSLFQS 1v0aA 44 :VSYTGT Number of specific fragments extracted= 2 number of extra gaps= 2 total=101465 # 1arb.441.113 read from T0547.t06.many.frag # found chain 1arb in training set T0547 441 :LVNFSLFQS 1arb 114 :FTLLELNNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101466 # 1ylnA.441.89 read from T0547.t06.many.frag # found chain 1ylnA in template set T0547 441 :LVNFSLFQS 1ylnA 90 :WMNIRAISP Number of specific fragments extracted= 1 number of extra gaps= 0 total=101467 # 1svsA.441.194 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 441 :LVNFSLFQS 1svsA 196 :FKMFDVGGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=101468 # 1ng0A.441.152 read from T0547.t06.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)L441 (1ng0A)S153 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1ng0A)G161 because P (beta_P) conformation "forbidden" or filtered. T0547 442 :VNFSLFQ 1ng0A 154 :FTTSNVW Number of specific fragments extracted= 1 number of extra gaps= 2 total=101469 # 1z6fA.441.295 read from T0547.t06.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)Q448 (1z6fA)G303 because T (delta_L) conformation "forbidden" or filtered. T0547 441 :LVNFSLF 1z6fA 296 :VYLTIPR T0547 449 :S 1z6fA 304 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=101471 # 1l8bA.441.32 read from T0547.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)S445 (1l8bA)S64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F447 (1l8bA)F66 because Y (epsilon') conformation "forbidden" or filtered. T0547 441 :LVNF 1l8bA 60 :LRLI T0547 446 :L 1l8bA 65 :K T0547 448 :QS 1l8bA 67 :DT Number of specific fragments extracted= 3 number of extra gaps= 2 total=101474 # 1c8uA.441.177 read from T0547.t06.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)S445 (1c8uA)R183 because Y (epsilon') conformation "forbidden" or filtered. T0547 441 :LVNF 1c8uA 179 :QVWI T0547 446 :LFQS 1c8uA 184 :ANGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=101476 # 1g1kA.441.73 read from T0547.t06.many.frag # found chain 1g1kA in template set T0547 441 :LVNFSLFQS 1g1kA 75 :ISFLFLDNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=101477 # 1stfI.441.63 read from T0547.t06.many.frag # found chain 1stfI in template set T0547 441 :LVNFSLFQS 1stfI 94 :FVHLRVFQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101478 # 1uv4A.441.195 read from T0547.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)N443 (1uv4A)L198 because E (beta_S) conformation "forbidden" or filtered. T0547 441 :LV 1uv4A 196 :YY T0547 444 :FSLFQS 1uv4A 199 :MVSFDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=101480 # 1yfuA.441.104 read from T0547.t06.many.frag # found chain 1yfuA in template set Warning: unaligning (T0547)L446 (1yfuA)E110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1yfuA)Q112 because P (beta_P) conformation "forbidden" or filtered. T0547 441 :LVNFS 1yfuA 105 :ACLVI T0547 447 :F 1yfuA 111 :R T0547 449 :S 1yfuA 113 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=101483 # 1h2wA.441.245 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)N443 (1h2wA)L248 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1h2wA)G254 because S (epsilon) conformation "forbidden" or filtered. T0547 441 :LV 1h2wA 246 :YV T0547 444 :FSLFQ 1h2wA 249 :LSIRE Number of specific fragments extracted= 2 number of extra gaps= 2 total=101485 # 1p3dA.441.339 read from T0547.t06.many.frag # found chain 1p3dA in training set T0547 441 :LVNFSLFQS 1p3dA 340 :VRLVDDYGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=101486 # 1i31A.441.150 read from T0547.t06.many.frag # found chain 1i31A in template set Warning: unaligning (T0547)L441 (1i31A)F272 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L446 (1i31A)Y277 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1i31A)T280 because G (3-10) conformation "forbidden" or filtered. T0547 442 :VNFS 1i31A 273 :ELMR T0547 447 :FQ 1i31A 278 :RT Number of specific fragments extracted= 2 number of extra gaps= 3 total=101488 # 1utcA.441.226 read from T0547.t06.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)N443 (1utcA)H229 because E (beta_S) conformation "forbidden" or filtered. T0547 441 :LV 1utcA 227 :KL T0547 444 :FSLFQS 1utcA 230 :IIEVGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=101490 # 1k3sA.441.39 read from T0547.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0547)Q448 (1k3sA)M47 because Y (epsilon') conformation "forbidden" or filtered. T0547 441 :LVNFSLF 1k3sA 40 :LEMCCPF T0547 449 :S 1k3sA 48 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=101492 # 1vmoA.441.83 read from T0547.t06.many.frag # found chain 1vmoA in template set T0547 441 :LVNFSLFQS 1vmoA 84 :LVSFSLRSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101493 # 1xt5A.441.106 read from T0547.t06.many.frag # found chain 1xt5A in training set T0547 441 :LVNFSLFQS 1xt5A 107 :YWCQVAQWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101494 # 3vub.441.32 read from T0547.t06.many.frag # found chain 3vub in training set T0547 441 :LVNFSLFQS 3vub 33 :VIPLASARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101495 # 1r0vA.441.127 read from T0547.t06.many.frag # found chain 1r0vA in template set T0547 441 :LVNFSLFQS 1r0vA 128 :ITYFRVYEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=101496 # 1a8d.441.110 read from T0547.t06.many.frag # found chain 1a8d in training set T0547 441 :LVNFSLFQS 1a8d 111 :YSIISSMKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101497 # 1h16A.441.553 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)N443 (1h16A)D556 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1h16A)G561 because S (epsilon) conformation "forbidden" or filtered. T0547 441 :LV 1h16A 554 :AI T0547 444 :FSLF 1h16A 557 :FEIE T0547 449 :S 1h16A 562 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=101500 # 1wlgA.441.136 read from T0547.t06.many.frag # found chain 1wlgA in training set T0547 441 :LVNFSLFQS 1wlgA 207 :WAVYTHDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101501 # 1knwA.442.402 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 442 :VNFSLFQSM 1knwA 403 :RLIRRRQTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101502 # 1sqwA.442.141 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)N443 (1sqwA)F143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1sqwA)K148 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :V 1sqwA 142 :G T0547 444 :FSLF 1sqwA 144 :GVAA T0547 449 :SM 1sqwA 149 :ST Number of specific fragments extracted= 3 number of extra gaps= 2 total=101505 # 1ry9A.442.64 read from T0547.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0547)N443 (1ry9A)L54 because E (beta_S) conformation "forbidden" or filtered. T0547 442 :V 1ry9A 53 :M T0547 444 :FSLFQSM 1ry9A 55 :WANFDAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=101507 # 1v3eA.442.124 read from T0547.t06.many.frag # found chain 1v3eA in template set T0547 442 :VNFSLFQSM 1v3eA 266 :YQLCSTPKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101508 # 1arb.442.114 read from T0547.t06.many.frag # found chain 1arb in training set T0547 442 :VNFSLFQSM 1arb 115 :TLLELNNAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101509 # 1c8uA.442.178 read from T0547.t06.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)N443 (1c8uA)W181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S445 (1c8uA)R183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1c8uA)G186 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :V 1c8uA 180 :V T0547 444 :F 1c8uA 182 :I T0547 446 :LF 1c8uA 184 :AN T0547 449 :SM 1c8uA 187 :SV Number of specific fragments extracted= 4 number of extra gaps= 3 total=101513 # 1l8bA.442.33 read from T0547.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)S445 (1l8bA)S64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F447 (1l8bA)F66 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :VNF 1l8bA 61 :RLI T0547 446 :L 1l8bA 65 :K T0547 448 :QSM 1l8bA 67 :DTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=101516 # 1stfI.442.64 read from T0547.t06.many.frag # found chain 1stfI in template set T0547 442 :VNFSLFQSM 1stfI 95 :VHLRVFQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101517 # 1lyqA.442.67 read from T0547.t06.many.frag # found chain 1lyqA in training set T0547 442 :VNFSLFQSM 1lyqA 68 :MVIIPREPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101518 # 1v0aA.442.41 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)Q448 (1v0aA)G48 because P (beta_P) conformation "forbidden" or filtered. T0547 442 :VNFSLF 1v0aA 42 :MEVSYT T0547 449 :SM 1v0aA 49 :TT Number of specific fragments extracted= 2 number of extra gaps= 1 total=101520 # 1yfuA.442.105 read from T0547.t06.many.frag # found chain 1yfuA in template set Warning: unaligning (T0547)L446 (1yfuA)E110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1yfuA)Q112 because P (beta_P) conformation "forbidden" or filtered. T0547 442 :VNFS 1yfuA 106 :CLVI T0547 447 :F 1yfuA 111 :R T0547 449 :SM 1yfuA 113 :RP Number of specific fragments extracted= 3 number of extra gaps= 2 total=101523 # 1g1kA.442.74 read from T0547.t06.many.frag # found chain 1g1kA in template set T0547 442 :VNFSLFQSM 1g1kA 76 :SFLFLDNTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101524 # 1svsA.442.195 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 442 :VNFSLFQSM 1svsA 197 :KMFDVGGQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=101525 # 1ylnA.442.90 read from T0547.t06.many.frag # found chain 1ylnA in template set T0547 442 :VNFSLFQSM 1ylnA 91 :MNIRAISPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=101526 # 1s4cA.442.46 read from T0547.t06.many.frag # found chain 1s4cA in template set Warning: unaligning (T0547)S445 (1s4cA)M50 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :VNF 1s4cA 47 :MNV T0547 446 :LFQSM 1s4cA 51 :EPETA Number of specific fragments extracted= 2 number of extra gaps= 1 total=101528 # 1xt5A.442.107 read from T0547.t06.many.frag # found chain 1xt5A in training set T0547 442 :VNFSLFQSM 1xt5A 108 :WCQVAQWSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101529 # 1z6fA.442.296 read from T0547.t06.many.frag # found chain 1z6fA in training set T0547 442 :VNFSLFQSM 1z6fA 297 :YLTIPRGRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=101530 # 1ng0A.442.153 read from T0547.t06.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)N443 (1ng0A)T155 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :V 1ng0A 154 :F T0547 444 :FSLFQSM 1ng0A 156 :TSNVWGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=101532 # 1i31A.442.151 read from T0547.t06.many.frag # found chain 1i31A in template set Warning: unaligning (T0547)L446 (1i31A)Y277 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :VNFS 1i31A 273 :ELMR T0547 447 :FQSM 1i31A 278 :RTTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=101534 # 1y0hA.442.9 read from T0547.t06.many.frag # found chain 1y0hA in training set T0547 442 :VNFSLFQSM 1y0hA 7 :AVIARFMPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=101535 # 1k3sA.442.40 read from T0547.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0547)Q448 (1k3sA)M47 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :VNFSLF 1k3sA 41 :EMCCPF T0547 449 :SM 1k3sA 48 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=101537 # 1h2wA.442.246 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)S449 (1h2wA)G254 because S (epsilon) conformation "forbidden" or filtered. T0547 442 :VNFSLFQ 1h2wA 247 :VLLSIRE T0547 450 :M 1h2wA 255 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=101539 # 1kr4A.442.24 read from T0547.t06.many.frag # found chain 1kr4A in training set Warning: unaligning (T0547)N443 (1kr4A)V10 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1kr4A)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 442 :V 1kr4A 9 :L T0547 444 :FSLFQ 1kr4A 11 :YSTFP T0547 450 :M 1kr4A 17 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=101542 # 1utcA.442.227 read from T0547.t06.many.frag # found chain 1utcA in template set T0547 442 :VNFSLFQSM 1utcA 228 :LHIIEVGTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=101543 # 2fh5A.442.73 read from T0547.t06.many.frag # found chain 2fh5A in template set Warning: unaligning (T0547)N443 (2fh5A)F66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (2fh5A)K72 because L (left) conformation "forbidden" or filtered. T0547 442 :V 2fh5A 65 :V T0547 444 :FSLFQ 2fh5A 67 :VVGFQ T0547 450 :M 2fh5A 73 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=101546 # 2cfeA.442.125 read from T0547.t06.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)S449 (2cfeA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 442 :VNFSLFQ 2cfeA 126 :VFGEVID T0547 450 :M 2cfeA 134 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=101548 # 1p3dA.442.340 read from T0547.t06.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)S449 (1p3dA)H348 because G (3-10) conformation "forbidden" or filtered. T0547 442 :VNFSLFQ 1p3dA 341 :RLVDDYG T0547 450 :M 1p3dA 349 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=101550 # 1uv4A.442.196 read from T0547.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)M450 because of BadResidue code BAD_PEPTIDE in next template residue (1uv4A)C206 T0547 442 :VNFSLFQS 1uv4A 197 :YLMVSFDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=101551 # 1zx8A.442.108 read from T0547.t06.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)S449 (1zx8A)G104 because T (delta_L) conformation "forbidden" or filtered. T0547 442 :VNFSLFQ 1zx8A 97 :VIGKIVE T0547 450 :M 1zx8A 105 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=101553 # 1zhxA.442.249 read from T0547.t06.many.frag # found chain 1zhxA in training set T0547 442 :VNFSLFQSM 1zhxA 246 :FKARIYKDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101554 # 1knwA.443.403 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q448 (1knwA)Q409 because P (beta_P) conformation "forbidden" or filtered. T0547 443 :NFSLF 1knwA 404 :LIRRR T0547 449 :SMP 1knwA 410 :TIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=101556 # 1stfI.443.65 read from T0547.t06.many.frag # found chain 1stfI in template set T0547 443 :NFSLFQSMP 1stfI 96 :HLRVFQSLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=101557 # 1l8bA.443.34 read from T0547.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)S445 (1l8bA)S64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)F447 (1l8bA)F66 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NF 1l8bA 62 :LI T0547 446 :L 1l8bA 65 :K T0547 448 :QSMP 1l8bA 67 :DTVE Number of specific fragments extracted= 3 number of extra gaps= 2 total=101560 # 1sqwA.443.142 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)Q448 (1sqwA)K148 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NFSLF 1sqwA 143 :FGVAA T0547 449 :SMP 1sqwA 149 :STQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=101562 # 1c8uA.443.179 read from T0547.t06.many.frag # found chain 1c8uA in template set T0547 443 :NFSLFQSMP 1c8uA 181 :WIRANGSVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=101563 # 1y0hA.443.10 read from T0547.t06.many.frag # found chain 1y0hA in training set T0547 443 :NFSLFQSMP 1y0hA 8 :VIARFMPRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=101564 # 1ry9A.443.65 read from T0547.t06.many.frag # found chain 1ry9A in template set T0547 443 :NFSLFQSMP 1ry9A 54 :LWANFDAPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101565 # 1v3eA.443.125 read from T0547.t06.many.frag # found chain 1v3eA in template set T0547 443 :NFSLFQSMP 1v3eA 267 :QLCSTPKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=101566 # 1v0aA.443.42 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)N443 (1v0aA)E43 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1v0aA)D51 because G (3-10) conformation "forbidden" or filtered. T0547 444 :FSLFQSM 1v0aA 44 :VSYTGTT Number of specific fragments extracted= 1 number of extra gaps= 2 total=101567 # 2cfeA.443.126 read from T0547.t06.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)S449 (2cfeA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 443 :NFSLFQ 2cfeA 127 :FGEVID T0547 450 :MP 2cfeA 134 :MN Number of specific fragments extracted= 2 number of extra gaps= 1 total=101569 # 1svsA.443.196 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 443 :NFSLFQSMP 1svsA 198 :MFDVGGQRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101570 # 1kr4A.443.25 read from T0547.t06.many.frag # found chain 1kr4A in training set Warning: unaligning (T0547)S449 (1kr4A)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NFSLFQ 1kr4A 10 :VYSTFP T0547 450 :MP 1kr4A 17 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=101572 # 1zx8A.443.109 read from T0547.t06.many.frag # found chain 1zx8A in template set T0547 443 :NFSLFQSMP 1zx8A 98 :IGKIVEGLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101573 # 1z6fA.443.297 read from T0547.t06.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)Q448 (1z6fA)G303 because T (delta_L) conformation "forbidden" or filtered. T0547 443 :NFSLF 1z6fA 298 :LTIPR T0547 449 :SMP 1z6fA 304 :RMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=101575 # 1qd1A.443.184 read from T0547.t06.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)Q448 (1qd1A)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NFSLF 1qd1A 186 :NINLL T0547 449 :SMP 1qd1A 192 :TRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=101577 # 2fh5A.443.74 read from T0547.t06.many.frag # found chain 2fh5A in template set Warning: unaligning (T0547)F447 (2fh5A)F70 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NFSL 2fh5A 66 :FVVG T0547 448 :QSMP 2fh5A 71 :QKIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=101579 # 2cxaA.443.171 read from T0547.t06.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)L446 (2cxaA)M158 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NFS 2cxaA 155 :GES T0547 447 :FQSMP 2cxaA 159 :FSRME Number of specific fragments extracted= 2 number of extra gaps= 1 total=101581 # 1zhxA.443.250 read from T0547.t06.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)S449 (1zhxA)D253 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NFSLFQ 1zhxA 247 :KARIYK T0547 450 :MP 1zhxA 254 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=101583 # 1ng0A.443.154 read from T0547.t06.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)N443 (1ng0A)T155 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :FSLFQSMP 1ng0A 156 :TSNVWGGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=101584 # 1k3sA.443.41 read from T0547.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0547)F447 (1k3sA)F46 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1k3sA)M47 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NFSL 1k3sA 42 :MCCP T0547 449 :SMP 1k3sA 48 :PLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=101586 # 1xt5A.443.108 read from T0547.t06.many.frag # found chain 1xt5A in training set T0547 443 :NFSLFQSMP 1xt5A 109 :CQVAQWSIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=101587 # 1g1kA.443.75 read from T0547.t06.many.frag # found chain 1g1kA in template set T0547 443 :NFSLFQSMP 1g1kA 77 :FLFLDNTIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=101588 # 1i31A.443.152 read from T0547.t06.many.frag # found chain 1i31A in template set Warning: unaligning (T0547)L446 (1i31A)Y277 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1i31A)D282 because L (left) conformation "forbidden" or filtered. T0547 443 :NFS 1i31A 274 :LMR T0547 447 :FQSM 1i31A 278 :RTTK Number of specific fragments extracted= 2 number of extra gaps= 2 total=101590 # 2ftrA.443.10 read from T0547.t06.many.frag # found chain 2ftrA in training set Warning: unaligning (T0547)N443 (2ftrA)L10 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (2ftrA)P17 because P (beta_P) conformation "forbidden" or filtered. T0547 444 :FSLFQS 2ftrA 11 :IALYEQ T0547 451 :P 2ftrA 18 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=101592 # 1tyjA.443.87 read from T0547.t06.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)N443 (1tyjA)F89 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :FSLFQSMP 1tyjA 90 :GRLYMNLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=101593 # 1arb.443.115 read from T0547.t06.many.frag # found chain 1arb in training set T0547 443 :NFSLFQSMP 1arb 116 :LLELNNAAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=101594 # 1ylnA.443.91 read from T0547.t06.many.frag # found chain 1ylnA in template set T0547 443 :NFSLFQSMP 1ylnA 92 :NIRAISPRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=101595 # 1tu1A.443.114 read from T0547.t06.many.frag # found chain 1tu1A in template set Warning: unaligning (T0547)N443 (1tu1A)I113 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1tu1A)T118 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :FSLF 1tu1A 114 :TTLT T0547 449 :SMP 1tu1A 119 :TPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=101597 # 2bsdA.443.186 read from T0547.t06.many.frag # found chain 2bsdA in template set Warning: unaligning (T0547)P451 (2bsdA)S195 because Y (epsilon') conformation "forbidden" or filtered. T0547 443 :NFSLFQSM 2bsdA 187 :IVRFFGSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=101598 # 1yfuA.443.106 read from T0547.t06.many.frag # found chain 1yfuA in template set T0547 443 :NFSLFQSMP 1yfuA 107 :LVIERQRPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101599 # 1l8bA.444.35 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 444 :FSLFQSMPD 1l8bA 63 :ISKFDTVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=101600 # 1knwA.444.404 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 444 :FSLFQSMPD 1knwA 405 :IRRRQTIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101601 # 1stfI.444.66 read from T0547.t06.many.frag # found chain 1stfI in template set T0547 444 :FSLFQSMPD 1stfI 97 :LRVFQSLPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=101602 # 1sqwA.444.143 read from T0547.t06.many.frag # found chain 1sqwA in template set T0547 444 :FSLFQSMPD 1sqwA 144 :GVAAKSTQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=101603 # 1ry9A.444.66 read from T0547.t06.many.frag # found chain 1ry9A in template set T0547 444 :FSLFQSMPD 1ry9A 55 :WANFDAPSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=101604 # 2cxaA.444.172 read from T0547.t06.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)L446 (2cxaA)M158 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :FS 2cxaA 156 :ES T0547 447 :FQSMPD 2cxaA 159 :FSRMEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=101606 # 1zx8A.444.110 read from T0547.t06.many.frag # found chain 1zx8A in template set T0547 444 :FSLFQSMPD 1zx8A 99 :GKIVEGLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=101607 # 1y0hA.444.11 read from T0547.t06.many.frag # found chain 1y0hA in training set Warning: unaligning (T0547)Q448 (1y0hA)M13 because D (zeta) conformation "forbidden" or filtered. T0547 444 :FSLF 1y0hA 9 :IARF T0547 449 :SMPD 1y0hA 14 :PRPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=101609 # 2cfeA.444.127 read from T0547.t06.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)F444 (2cfeA)G128 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLFQSMPD 2cfeA 129 :EVIDGMNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=101610 # 1c8uA.444.180 read from T0547.t06.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)Q448 (1c8uA)G186 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :FSLF 1c8uA 182 :IRAN T0547 449 :SMPD 1c8uA 187 :SVPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=101612 # 2ftrA.444.11 read from T0547.t06.many.frag # found chain 2ftrA in training set T0547 444 :FSLFQSMPD 2ftrA 11 :IALYEQPED Number of specific fragments extracted= 1 number of extra gaps= 0 total=101613 # 1kr4A.444.26 read from T0547.t06.many.frag # found chain 1kr4A in training set T0547 444 :FSLFQSMPD 1kr4A 11 :YSTFPNEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101614 # 1qd1A.444.185 read from T0547.t06.many.frag # found chain 1qd1A in training set T0547 444 :FSLFQSMPD 1qd1A 187 :INLLSTREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=101615 # 1v0aA.444.43 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)P451 (1v0aA)D51 because G (3-10) conformation "forbidden" or filtered. T0547 444 :FSLFQSM 1v0aA 44 :VSYTGTT T0547 452 :D 1v0aA 52 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=101617 # 1zhxA.444.251 read from T0547.t06.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)S449 (1zhxA)D253 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :FSLFQ 1zhxA 248 :ARIYK T0547 450 :MPD 1zhxA 254 :SKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=101619 # 1dy5A.444.44 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)Q448 (1dy5A)E49 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :FSLF 1dy5A 45 :TFVH T0547 449 :SMPD 1dy5A 50 :SLAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=101621 # 1xpkC.444.312 read from T0547.t06.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)S445 (1xpkC)Y314 because Y (epsilon') conformation "forbidden" or filtered. T0547 444 :F 1xpkC 313 :F T0547 446 :LFQSMPD 1xpkC 315 :SATLVEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=101623 # 2bbdA.444.154 read from T0547.t06.many.frag # found chain 2bbdA in template set T0547 444 :FSLFQSMPD 2bbdA 156 :TYERVTAQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101624 # 1uw4A.444.48 read from T0547.t06.many.frag # found chain 1uw4A in template set T0547 444 :FSLFQSMPD 1uw4A 98 :YINFKNQED Number of specific fragments extracted= 1 number of extra gaps= 0 total=101625 # 1v3eA.444.126 read from T0547.t06.many.frag # found chain 1v3eA in template set T0547 444 :FSLFQSMPD 1v3eA 268 :LCSTPKVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101626 # 1svsA.444.197 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 444 :FSLFQSMPD 1svsA 199 :FDVGGQRSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101627 # 1tu1A.444.115 read from T0547.t06.many.frag # found chain 1tu1A in template set T0547 444 :FSLFQSMPD 1tu1A 114 :TTLTTTPAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=101628 # 1ng0A.444.155 read from T0547.t06.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)M450 (1ng0A)G162 because T (delta_L) conformation "forbidden" or filtered. T0547 444 :FSLFQS 1ng0A 156 :TSNVWG T0547 451 :PD 1ng0A 163 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=101630 # 1z6fA.444.298 read from T0547.t06.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)Q448 (1z6fA)G303 because T (delta_L) conformation "forbidden" or filtered. T0547 444 :FSLF 1z6fA 299 :TIPR T0547 449 :SMPD 1z6fA 304 :RMKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=101632 # 1tyjA.444.88 read from T0547.t06.many.frag # found chain 1tyjA in template set T0547 444 :FSLFQSMPD 1tyjA 90 :GRLYMNLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101633 # 1jh6A.444.87 read from T0547.t06.many.frag # found chain 1jh6A in training set T0547 444 :FSLFQSMPD 1jh6A 88 :FLLLQTTPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101634 1s28A expands to /projects/compbio/data/pdb/1s28.pdb.gz 1s28A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1s28A.444.54 read from T0547.t06.many.frag # adding 1s28A to template set # found chain 1s28A in template set Warning: unaligning (T0547)Q448 (1s28A)G59 because S (epsilon) conformation "forbidden" or filtered. T0547 444 :FSLF 1s28A 55 :LSDI T0547 449 :SMPD 1s28A 60 :VIDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=101636 # 1w0pA.444.306 read from T0547.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)S445 (1w0pA)Y308 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1w0pA)D314 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (1w0pA)A315 because E (beta_S) conformation "forbidden" or filtered. T0547 444 :F 1w0pA 307 :S T0547 446 :LFQSM 1w0pA 309 :ARWPT Number of specific fragments extracted= 2 number of extra gaps= 2 total=101638 # 1k3sA.444.42 read from T0547.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0547)F447 (1k3sA)F46 because G (3-10) conformation "forbidden" or filtered. T0547 444 :FSL 1k3sA 43 :CCP T0547 448 :QSMPD 1k3sA 47 :MPLPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=101640 # 1wcdJ.444.82 read from T0547.t06.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0547)S445 (1wcdJ)Q84 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1wcdJ)Q90 because E (beta_S) conformation "forbidden" or filtered. T0547 444 :F 1wcdJ 83 :D T0547 446 :LFQSM 1wcdJ 85 :MLLTA T0547 452 :D 1wcdJ 91 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=101643 # 1l8bA.445.36 read from T0547.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)S445 (1l8bA)S64 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LFQSMPDF 1l8bA 65 :KFDTVEDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=101644 # 1knwA.445.405 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 445 :SLFQSMPDF 1knwA 406 :RRRQTIEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101645 # 1stfI.445.67 read from T0547.t06.many.frag # found chain 1stfI in template set T0547 445 :SLFQSMPDF 1stfI 98 :RVFQSLPHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101646 # 1zx8A.445.111 read from T0547.t06.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)S449 (1zx8A)G104 because T (delta_L) conformation "forbidden" or filtered. T0547 445 :SLFQ 1zx8A 100 :KIVE T0547 450 :MPDF 1zx8A 105 :LEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=101648 # 2cxaA.445.173 read from T0547.t06.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)S445 (2cxaA)S157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L446 (2cxaA)M158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (2cxaA)N164 because L (left) conformation "forbidden" or filtered. T0547 447 :FQSMP 2cxaA 159 :FSRME T0547 453 :F 2cxaA 165 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=101650 # 1sqwA.445.144 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)Q448 (1sqwA)K148 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLF 1sqwA 145 :VAA T0547 449 :SMPDF 1sqwA 149 :STQDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=101652 # 2cfeA.445.128 read from T0547.t06.many.frag # found chain 2cfeA in training set T0547 445 :SLFQSMPDF 2cfeA 129 :EVIDGMNVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101653 # 2ftrA.445.12 read from T0547.t06.many.frag # found chain 2ftrA in training set T0547 445 :SLFQSMPDF 2ftrA 12 :ALYEQPEDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101654 # 1y0hA.445.12 read from T0547.t06.many.frag # found chain 1y0hA in training set T0547 445 :SLFQSMPDF 1y0hA 10 :ARFMPRPDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101655 # 1gy7A.445.41 read from T0547.t06.many.frag # found chain 1gy7A in training set T0547 445 :SLFQSMPDF 1gy7A 42 :SQLQGAKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101656 # 1zhxA.445.252 read from T0547.t06.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)S449 (1zhxA)D253 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLFQ 1zhxA 249 :RIYK T0547 450 :MPDF 1zhxA 254 :SKDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=101658 # 1dy5A.445.45 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)Q448 (1dy5A)E49 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLF 1dy5A 46 :FVH T0547 449 :SMPDF 1dy5A 50 :SLADV Number of specific fragments extracted= 2 number of extra gaps= 1 total=101660 # 1xpkC.445.313 read from T0547.t06.many.frag # found chain 1xpkC in template set T0547 445 :SLFQSMPDF 1xpkC 314 :YSATLVEGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=101661 # 1qd1A.445.186 read from T0547.t06.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)Q448 (1qd1A)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLF 1qd1A 188 :NLL T0547 449 :SMPDF 1qd1A 192 :TREQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=101663 # 1wcdJ.445.83 read from T0547.t06.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0547)S445 (1wcdJ)Q84 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (1wcdJ)L87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1wcdJ)Q90 because E (beta_S) conformation "forbidden" or filtered. T0547 446 :LF 1wcdJ 85 :ML T0547 449 :SM 1wcdJ 88 :TA T0547 452 :DF 1wcdJ 91 :NL Number of specific fragments extracted= 3 number of extra gaps= 3 total=101666 # 1c8uA.445.181 read from T0547.t06.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)Q448 (1c8uA)G186 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLF 1c8uA 183 :RAN T0547 449 :SMPDF 1c8uA 187 :SVPDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=101668 # 1v0aA.445.44 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)P451 (1v0aA)D51 because G (3-10) conformation "forbidden" or filtered. T0547 445 :SLFQSM 1v0aA 45 :SYTGTT T0547 452 :DF 1v0aA 52 :GY Number of specific fragments extracted= 2 number of extra gaps= 1 total=101670 # 1svsA.445.198 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 445 :SLFQSMPDF 1svsA 200 :DVGGQRSER Number of specific fragments extracted= 1 number of extra gaps= 0 total=101671 # 1jh6A.445.88 read from T0547.t06.many.frag # found chain 1jh6A in training set T0547 445 :SLFQSMPDF 1jh6A 89 :LLLQTTPEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101672 # 1tyjA.445.89 read from T0547.t06.many.frag # found chain 1tyjA in template set T0547 445 :SLFQSMPDF 1tyjA 91 :RLYMNLSAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=101673 # 1tu1A.445.116 read from T0547.t06.many.frag # found chain 1tu1A in template set Warning: unaligning (T0547)Q448 (1tu1A)T118 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLF 1tu1A 115 :TLT T0547 449 :SMPDF 1tu1A 119 :TPADL Number of specific fragments extracted= 2 number of extra gaps= 1 total=101675 # 1kr4A.445.27 read from T0547.t06.many.frag # found chain 1kr4A in training set Warning: unaligning (T0547)S449 (1kr4A)N16 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLFQ 1kr4A 12 :STFP T0547 450 :MPDF 1kr4A 17 :EEKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=101677 # 2arcA.445.88 read from T0547.t06.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)S445 (2arcA)W95 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q448 (2arcA)F98 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (2arcA)P100 because P (beta_P) conformation "forbidden" or filtered. T0547 446 :LF 2arcA 96 :VY T0547 449 :S 2arcA 99 :R T0547 451 :PDF 2arcA 101 :RAY Number of specific fragments extracted= 3 number of extra gaps= 3 total=101680 # 1zceA.445.94 read from T0547.t06.many.frag # found chain 1zceA in training set T0547 445 :SLFQSMPDF 1zceA 95 :PQPVSLKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101681 # 1ry9A.445.67 read from T0547.t06.many.frag # found chain 1ry9A in template set T0547 445 :SLFQSMPDF 1ry9A 56 :ANFDAPSDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101682 # 1xv5A.445.232 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)M450 (1xv5A)S1237 because Y (epsilon') conformation "forbidden" or filtered. T0547 445 :SLFQS 1xv5A 1232 :EGLER T0547 451 :PDF 1xv5A 1238 :PAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=101684 # 2bbdA.445.155 read from T0547.t06.many.frag # found chain 2bbdA in template set T0547 445 :SLFQSMPDF 2bbdA 157 :YERVTAQEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101685 # 2bsdA.445.188 read from T0547.t06.many.frag # found chain 2bsdA in template set Warning: unaligning (T0547)P451 (2bsdA)S195 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (2bsdA)N196 because L (left) conformation "forbidden" or filtered. T0547 445 :SLFQSM 2bsdA 189 :RFFGSV T0547 453 :F 2bsdA 197 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=101687 # 2eng.445.184 read from T0547.t06.many.frag # found chain 2eng in training set T0547 445 :SLFQSMPDF 2eng 185 :RQVQCPAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101688 # 1w0pA.445.307 read from T0547.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)S445 (1w0pA)Y308 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1w0pA)P312 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1w0pA)D314 because G (3-10) conformation "forbidden" or filtered. T0547 446 :LFQ 1w0pA 309 :ARW T0547 450 :M 1w0pA 313 :T T0547 452 :DF 1w0pA 315 :AA Number of specific fragments extracted= 3 number of extra gaps= 3 total=101691 # 1l8bA.446.37 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 446 :LFQSMPDFW 1l8bA 65 :KFDTVEDFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=101692 # 1knwA.446.406 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 446 :LFQSMPDFW 1knwA 407 :RRQTIEELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101693 # 1zx8A.446.112 read from T0547.t06.many.frag # found chain 1zx8A in template set T0547 446 :LFQSMPDFW 1zx8A 101 :IVEGLEDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101694 # 1gy7A.446.42 read from T0547.t06.many.frag # found chain 1gy7A in training set T0547 446 :LFQSMPDFW 1gy7A 43 :QLQGAKDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101695 # 2cxaA.446.174 read from T0547.t06.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)D452 (2cxaA)N164 because L (left) conformation "forbidden" or filtered. T0547 446 :LFQSMP 2cxaA 158 :MFSRME T0547 453 :FW 2cxaA 165 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=101697 # 1wcdJ.446.84 read from T0547.t06.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0547)Q448 (1wcdJ)L87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1wcdJ)Q90 because E (beta_S) conformation "forbidden" or filtered. T0547 446 :LF 1wcdJ 85 :ML T0547 449 :SM 1wcdJ 88 :TA T0547 452 :DFW 1wcdJ 91 :NLP Number of specific fragments extracted= 3 number of extra gaps= 2 total=101700 # 1sqwA.446.145 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)Q448 (1sqwA)K148 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LF 1sqwA 146 :AA T0547 449 :SMPDFW 1sqwA 149 :STQDCR Number of specific fragments extracted= 2 number of extra gaps= 1 total=101702 # 1stfI.446.68 read from T0547.t06.many.frag # found chain 1stfI in template set T0547 446 :LFQSMPDFW 1stfI 99 :VFQSLPHEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=101703 # 2cfeA.446.129 read from T0547.t06.many.frag # found chain 2cfeA in training set T0547 446 :LFQSMPDFW 2cfeA 130 :VIDGMNVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101704 # 1dy5A.446.46 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)Q448 (1dy5A)E49 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LF 1dy5A 47 :VH T0547 449 :SMPDFW 1dy5A 50 :SLADVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=101706 # 1zceA.446.95 read from T0547.t06.many.frag # found chain 1zceA in training set T0547 446 :LFQSMPDFW 1zceA 96 :QPVSLKDVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101707 # 1jh6A.446.89 read from T0547.t06.many.frag # found chain 1jh6A in training set Warning: unaligning (T0547)M450 (1jh6A)T94 because P (beta_P) conformation "forbidden" or filtered. T0547 446 :LFQS 1jh6A 90 :LLQT T0547 451 :PDFW 1jh6A 95 :PEVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=101709 # 1xv5A.446.233 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)M450 (1xv5A)S1237 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LFQS 1xv5A 1233 :GLER T0547 451 :PDFW 1xv5A 1238 :PAFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=101711 # 1r0vA.446.247 read from T0547.t06.many.frag # found chain 1r0vA in template set T0547 446 :LFQSMPDFW 1r0vA 248 :KVESVDDLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=101712 # 1xpkC.446.314 read from T0547.t06.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)D452 (1xpkC)G321 because T (delta_L) conformation "forbidden" or filtered. T0547 446 :LFQSMP 1xpkC 315 :SATLVE T0547 453 :FW 1xpkC 322 :YK Number of specific fragments extracted= 2 number of extra gaps= 1 total=101714 # 1zhxA.446.253 read from T0547.t06.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)S449 (1zhxA)D253 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LFQ 1zhxA 250 :IYK T0547 450 :MPDFW 1zhxA 254 :SKDSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=101716 # 1y0hA.446.13 read from T0547.t06.many.frag # found chain 1y0hA in training set Warning: unaligning (T0547)S449 (1y0hA)P14 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (1y0hA)R15 because P (beta_P) conformation "forbidden" or filtered. T0547 446 :LFQ 1y0hA 11 :RFM T0547 451 :PDFW 1y0hA 16 :PDAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=101718 # 2ftrA.446.13 read from T0547.t06.many.frag # found chain 2ftrA in training set Warning: unaligning (T0547)S449 (2ftrA)Q16 because P (beta_P) conformation "forbidden" or filtered. T0547 446 :LFQ 2ftrA 13 :LYE T0547 450 :MPDFW 2ftrA 17 :PEDKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=101720 # 1svsA.446.199 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 446 :LFQSMPDFW 1svsA 201 :VGGQRSERK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101721 # 2eng.446.185 read from T0547.t06.many.frag # found chain 2eng in training set T0547 446 :LFQSMPDFW 2eng 186 :QVQCPAELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101722 # 1hqz1.446.47 read from T0547.t06.many.frag # found chain 1hqz1 in template set T0547 446 :LFQSMPDFW 1hqz1 48 :TGSSFHDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101723 # 1qd1A.446.187 read from T0547.t06.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)Q448 (1qd1A)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LF 1qd1A 189 :LL T0547 449 :SMPDFW 1qd1A 192 :TREQAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=101725 # 1v0aA.446.45 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)P451 (1v0aA)D51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (1v0aA)G52 because P (beta_P) conformation "forbidden" or filtered. T0547 446 :LFQSM 1v0aA 46 :YTGTT T0547 453 :FW 1v0aA 53 :YW Number of specific fragments extracted= 2 number of extra gaps= 1 total=101727 # 1umgA.446.180 read from T0547.t06.many.frag # found chain 1umgA in training set Warning: unaligning (T0547)F447 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1umgA)Q185 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1umgA)Q185 T0547 446 :L 1umgA 183 :A T0547 449 :SMPDFW 1umgA 186 :EIYDLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=101729 # 2bj0A.446.53 read from T0547.t06.many.frag # found chain 2bj0A in template set T0547 446 :LFQSMPDFW 2bj0A 54 :ASWKVPYYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101730 # 1t71A.446.264 read from T0547.t06.many.frag # found chain 1t71A in template set Warning: unaligning (T0547)S449 (1t71A)D268 because P (beta_P) conformation "forbidden" or filtered. T0547 446 :LFQ 1t71A 265 :IVE T0547 450 :MPDFW 1t71A 269 :DPRYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=101732 # 1t3tA.446.146 read from T0547.t06.many.frag # found chain 1t3tA in template set T0547 446 :LFQSMPDFW 1t3tA 139 :VFSSLTDAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101733 # 1c8uA.446.182 read from T0547.t06.many.frag # found chain 1c8uA in template set Warning: unaligning (T0547)Q448 (1c8uA)G186 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LF 1c8uA 184 :AN T0547 449 :SMPDFW 1c8uA 187 :SVPDDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=101735 # 2c1lA.446.316 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 446 :LFQSMPDFW 2c1lA 317 :IKQGTPEHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101736 # 1tu1A.446.117 read from T0547.t06.many.frag # found chain 1tu1A in template set Warning: unaligning (T0547)Q448 (1tu1A)T118 because Y (epsilon') conformation "forbidden" or filtered. T0547 446 :LF 1tu1A 116 :LT T0547 449 :SMPDFW 1tu1A 119 :TPADLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=101738 # 1l8bA.447.38 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 447 :FQSMPDFWG 1l8bA 66 :FDTVEDFWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101739 # 1gy7A.447.43 read from T0547.t06.many.frag # found chain 1gy7A in training set Warning: unaligning (T0547)S449 (1gy7A)G46 because S (epsilon) conformation "forbidden" or filtered. T0547 447 :FQ 1gy7A 44 :LQ T0547 450 :MPDFWG 1gy7A 47 :AKDIVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=101741 # 1knwA.447.407 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 447 :FQSMPDFWG 1knwA 408 :RQTIEELLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101742 # 1zx8A.447.113 read from T0547.t06.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)F447 (1zx8A)V102 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S449 (1zx8A)G104 because T (delta_L) conformation "forbidden" or filtered. T0547 448 :Q 1zx8A 103 :E T0547 450 :MPDFWG 1zx8A 105 :LEDLKK Number of specific fragments extracted= 2 number of extra gaps= 2 total=101744 # 1xv5A.447.234 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)M450 (1xv5A)S1237 because Y (epsilon') conformation "forbidden" or filtered. T0547 447 :FQS 1xv5A 1234 :LER T0547 451 :PDFWG 1xv5A 1238 :PAFIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=101746 # 1wcdJ.447.85 read from T0547.t06.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0547)Q448 (1wcdJ)L87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1wcdJ)Q90 because E (beta_S) conformation "forbidden" or filtered. T0547 447 :F 1wcdJ 86 :L T0547 449 :SM 1wcdJ 88 :TA T0547 452 :DFWG 1wcdJ 91 :NLPA Number of specific fragments extracted= 3 number of extra gaps= 2 total=101749 # 1dy5A.447.47 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)Q448 (1dy5A)E49 because Y (epsilon') conformation "forbidden" or filtered. T0547 447 :F 1dy5A 48 :H T0547 449 :SMPDFWG 1dy5A 50 :SLADVQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=101751 # 1r0vA.447.248 read from T0547.t06.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)S449 (1r0vA)S251 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1r0vA)H257 because G (3-10) conformation "forbidden" or filtered. T0547 447 :FQ 1r0vA 249 :VE T0547 450 :MPDFW 1r0vA 252 :VDDLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=101753 # 1umgA.447.181 read from T0547.t06.many.frag # found chain 1umgA in training set Warning: unaligning (T0547)F447 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1umgA)Q185 Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1umgA)Q185 T0547 449 :SMPDFWG 1umgA 186 :EIYDLLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=101754 # 2cxaA.447.175 read from T0547.t06.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)D452 (2cxaA)N164 because L (left) conformation "forbidden" or filtered. T0547 447 :FQSMP 2cxaA 159 :FSRME T0547 453 :FWG 2cxaA 165 :ASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=101756 # 1jh6A.447.90 read from T0547.t06.many.frag # found chain 1jh6A in training set T0547 447 :FQSMPDFWG 1jh6A 91 :LQTTPEVME Number of specific fragments extracted= 1 number of extra gaps= 0 total=101757 # 2cfeA.447.130 read from T0547.t06.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)S449 (2cfeA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 447 :FQ 2cfeA 131 :ID T0547 450 :MPDFWG 2cfeA 134 :MNVVKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=101759 # 1zceA.447.96 read from T0547.t06.many.frag # found chain 1zceA in training set Warning: unaligning (T0547)G455 (1zceA)A105 because G (3-10) conformation "forbidden" or filtered. T0547 447 :FQSMPDFW 1zceA 97 :PVSLKDVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=101760 # 1t3tA.447.147 read from T0547.t06.many.frag # found chain 1t3tA in template set T0547 447 :FQSMPDFWG 1t3tA 140 :FSSLTDAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101761 # 1sqwA.447.146 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)Q448 (1sqwA)K148 because Y (epsilon') conformation "forbidden" or filtered. T0547 447 :F 1sqwA 147 :A T0547 449 :SMPDFWG 1sqwA 149 :STQDCRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=101763 # 1zhxA.447.254 read from T0547.t06.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)S449 (1zhxA)D253 because Y (epsilon') conformation "forbidden" or filtered. T0547 447 :FQ 1zhxA 251 :YK T0547 450 :MPDFWG 1zhxA 254 :SKDSKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=101765 # 1v0aA.447.46 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)P451 (1v0aA)D51 because G (3-10) conformation "forbidden" or filtered. T0547 447 :FQSM 1v0aA 47 :TGTT T0547 452 :DFWG 1v0aA 52 :GYWG Number of specific fragments extracted= 2 number of extra gaps= 1 total=101767 # 1hqz1.447.48 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)G455 (1hqz1)Q57 because G (3-10) conformation "forbidden" or filtered. T0547 447 :FQSMPDFW 1hqz1 49 :GSSFHDFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=101768 # 2eng.447.186 read from T0547.t06.many.frag # found chain 2eng in training set T0547 447 :FQSMPDFWG 2eng 187 :VQCPAELVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101769 # 2bj0A.447.54 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)Q448 (2bj0A)W56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (2bj0A)S63 because G (3-10) conformation "forbidden" or filtered. T0547 447 :F 2bj0A 55 :S T0547 449 :SMPDFW 2bj0A 57 :KVPYYS Number of specific fragments extracted= 2 number of extra gaps= 2 total=101771 # 1f46A.447.83 read from T0547.t06.many.frag # found chain 1f46A in training set Warning: unaligning (T0547)Q448 (1f46A)P89 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1f46A)G92 because T (delta_L) conformation "forbidden" or filtered. T0547 447 :F 1f46A 88 :V T0547 449 :SM 1f46A 90 :SY T0547 452 :DFWG 1f46A 93 :DELQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=101774 # 2c1lA.447.317 read from T0547.t06.many.frag # found chain 2c1lA in template set Warning: unaligning (T0547)S449 (2c1lA)G320 because L (left) conformation "forbidden" or filtered. T0547 447 :FQ 2c1lA 318 :KQ T0547 450 :MPDFWG 2c1lA 321 :TPEHSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=101776 # 2ftrA.447.14 read from T0547.t06.many.frag # found chain 2ftrA in training set Warning: unaligning (T0547)M450 (2ftrA)P17 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (2ftrA)D19 because D (zeta) conformation "forbidden" or filtered. T0547 447 :FQS 2ftrA 14 :YEQ T0547 451 :P 2ftrA 18 :E T0547 453 :FWG 2ftrA 20 :KQA Number of specific fragments extracted= 3 number of extra gaps= 2 total=101779 # 1t71A.447.265 read from T0547.t06.many.frag # found chain 1t71A in template set T0547 447 :FQSMPDFWG 1t71A 266 :VEDDPRYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101780 # 1svsA.447.200 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)G455 (1svsA)K210 because G (3-10) conformation "forbidden" or filtered. T0547 447 :FQSMPDFW 1svsA 202 :GGQRSERK Number of specific fragments extracted= 1 number of extra gaps= 1 total=101781 # 1y0hA.447.14 read from T0547.t06.many.frag # found chain 1y0hA in training set Warning: unaligning (T0547)Q448 (1y0hA)M13 because D (zeta) conformation "forbidden" or filtered. T0547 447 :F 1y0hA 12 :F T0547 449 :SMPDFWG 1y0hA 14 :PRPDARS Number of specific fragments extracted= 2 number of extra gaps= 1 total=101783 # 1qd1A.447.188 read from T0547.t06.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)Q448 (1qd1A)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 447 :F 1qd1A 190 :L T0547 449 :SMPDFWG 1qd1A 192 :TREQAHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=101785 # 1tu1A.447.118 read from T0547.t06.many.frag # found chain 1tu1A in template set Warning: unaligning (T0547)Q448 (1tu1A)T118 because Y (epsilon') conformation "forbidden" or filtered. T0547 447 :F 1tu1A 117 :T T0547 449 :SMPDFWG 1tu1A 119 :TPADLPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=101787 # 1xpkC.447.315 read from T0547.t06.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)S449 (1xpkC)L318 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (1xpkC)G321 because T (delta_L) conformation "forbidden" or filtered. T0547 447 :FQ 1xpkC 316 :AT T0547 450 :MP 1xpkC 319 :VE T0547 453 :FWG 1xpkC 322 :YKD Number of specific fragments extracted= 3 number of extra gaps= 2 total=101790 # 1ko6A.447.50 read from T0547.t06.many.frag # found chain 1ko6A in template set Warning: unaligning (T0547)Q448 (1ko6A)P728 because C (cis) conformation "forbidden" or filtered. T0547 447 :F 1ko6A 727 :I T0547 449 :SMPDFWG 1ko6A 729 :SMDDLAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=101792 # 1l8bA.448.39 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 448 :QSMPDFWGL 1l8bA 67 :DTVEDFWAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101793 # 1gy7A.448.44 read from T0547.t06.many.frag # found chain 1gy7A in training set T0547 448 :QSMPDFWGL 1gy7A 45 :QGAKDIVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101794 # 1zx8A.448.114 read from T0547.t06.many.frag # found chain 1zx8A in template set T0547 448 :QSMPDFWGL 1zx8A 103 :EGLEDLKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101795 # 1xv5A.448.235 read from T0547.t06.many.frag # found chain 1xv5A in training set T0547 448 :QSMPDFWGL 1xv5A 1235 :ERSPAFIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101796 # 1knwA.448.408 read from T0547.t06.many.frag # found chain 1knwA in template set Warning: unaligning (T0547)Q448 (1knwA)Q409 because P (beta_P) conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1knwA 410 :TIEELLAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=101797 # 1v0aA.448.47 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)P451 (1v0aA)D51 because G (3-10) conformation "forbidden" or filtered. T0547 448 :QSM 1v0aA 48 :GTT T0547 452 :DFWGL 1v0aA 52 :GYWGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=101799 # 1umgA.448.182 read from T0547.t06.many.frag # found chain 1umgA in training set Warning: unaligning (T0547)Q448 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1umgA)Q185 T0547 449 :SMPDFWGL 1umgA 186 :EIYDLLAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=101800 # 1t3tA.448.148 read from T0547.t06.many.frag # found chain 1t3tA in template set T0547 448 :QSMPDFWGL 1t3tA 141 :SSLTDAEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101801 # 1r0vA.448.249 read from T0547.t06.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)W454 (1r0vA)P256 because G (3-10) conformation "forbidden" or filtered. T0547 448 :QSMPDF 1r0vA 250 :ESVDDL T0547 455 :GL 1r0vA 257 :HS Number of specific fragments extracted= 2 number of extra gaps= 1 total=101803 # 1wcdJ.448.86 read from T0547.t06.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0547)Q448 (1wcdJ)L87 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1wcdJ)Q90 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (1wcdJ)N91 because N (gamma') conformation "forbidden" or filtered. T0547 449 :SM 1wcdJ 88 :TA T0547 453 :FWGL 1wcdJ 92 :LPAS Number of specific fragments extracted= 2 number of extra gaps= 2 total=101805 # 1dy5A.448.48 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)Q448 (1dy5A)E49 because Y (epsilon') conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1dy5A 50 :SLADVQAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=101806 # 2cfeA.448.131 read from T0547.t06.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)S449 (2cfeA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 448 :Q 2cfeA 132 :D T0547 450 :MPDFWGL 2cfeA 134 :MNVVKAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=101808 # 2bj0A.448.55 read from T0547.t06.many.frag # found chain 2bj0A in template set T0547 448 :QSMPDFWGL 2bj0A 56 :WKVPYYSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101809 # 2c1lA.448.318 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 448 :QSMPDFWGL 2c1lA 319 :QGTPEHSQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101810 # 1f46A.448.84 read from T0547.t06.many.frag # found chain 1f46A in training set Warning: unaligning (T0547)Q448 (1f46A)P89 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1f46A)G92 because T (delta_L) conformation "forbidden" or filtered. T0547 449 :SM 1f46A 90 :SY T0547 452 :DFWGL 1f46A 93 :DELQL Number of specific fragments extracted= 2 number of extra gaps= 2 total=101812 # 1zceA.448.97 read from T0547.t06.many.frag # found chain 1zceA in training set T0547 448 :QSMPDFWGL 1zceA 98 :VSLKDVKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=101813 # 1sqwA.448.147 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)Q448 (1sqwA)K148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1sqwA)K155 because G (3-10) conformation "forbidden" or filtered. T0547 449 :SMPDFW 1sqwA 149 :STQDCR T0547 456 :L 1sqwA 156 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=101815 # 1q52A.448.218 read from T0547.t06.many.frag # found chain 1q52A in training set T0547 448 :QSMPDFWGL 1q52A 219 :YTAEQMHQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=101816 # 2eng.448.187 read from T0547.t06.many.frag # found chain 2eng in training set T0547 448 :QSMPDFWGL 2eng 188 :QCPAELVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=101817 # 1zhxA.448.255 read from T0547.t06.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)S449 (1zhxA)D253 because Y (epsilon') conformation "forbidden" or filtered. T0547 448 :Q 1zhxA 252 :K T0547 450 :MPDFWGL 1zhxA 254 :SKDSKDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=101819 # 1svsA.448.201 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 448 :QSMPDFWGL 1svsA 203 :GQRSERKKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=101820 # 1hqz1.448.49 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)G455 (1hqz1)Q57 because G (3-10) conformation "forbidden" or filtered. T0547 448 :QSMPDFW 1hqz1 50 :SSFHDFL T0547 456 :L 1hqz1 58 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=101822 # 1jh6A.448.91 read from T0547.t06.many.frag # found chain 1jh6A in training set T0547 448 :QSMPDFWGL 1jh6A 92 :QTTPEVMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101823 # 1tu1A.448.119 read from T0547.t06.many.frag # found chain 1tu1A in template set Warning: unaligning (T0547)Q448 (1tu1A)T118 because Y (epsilon') conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1tu1A 119 :TPADLPHH Number of specific fragments extracted= 1 number of extra gaps= 1 total=101824 # 1ko6A.448.51 read from T0547.t06.many.frag # found chain 1ko6A in template set Warning: unaligning (T0547)Q448 (1ko6A)P728 because C (cis) conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1ko6A 729 :SMDDLAKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=101825 # 2cxaA.448.176 read from T0547.t06.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)D452 (2cxaA)N164 because L (left) conformation "forbidden" or filtered. T0547 448 :QSMP 2cxaA 160 :SRME T0547 453 :FWGL 2cxaA 165 :ASKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=101827 # 1t71A.448.266 read from T0547.t06.many.frag # found chain 1t71A in template set Warning: unaligning (T0547)G455 (1t71A)K274 because G (3-10) conformation "forbidden" or filtered. T0547 448 :QSMPDFW 1t71A 267 :EDDPRYL T0547 456 :L 1t71A 275 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=101829 # 1qd1A.448.189 read from T0547.t06.many.frag # found chain 1qd1A in training set Warning: unaligning (T0547)Q448 (1qd1A)S191 because Y (epsilon') conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1qd1A 192 :TREQAHRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=101830 # 2ftrA.448.15 read from T0547.t06.many.frag # found chain 2ftrA in training set Warning: unaligning (T0547)D452 (2ftrA)D19 because D (zeta) conformation "forbidden" or filtered. T0547 448 :QSMP 2ftrA 15 :EQPE T0547 453 :FWGL 2ftrA 20 :KQAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=101832 # 1y0hA.448.15 read from T0547.t06.many.frag # found chain 1y0hA in training set Warning: unaligning (T0547)Q448 (1y0hA)M13 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)M450 (1y0hA)R15 because P (beta_P) conformation "forbidden" or filtered. T0547 449 :S 1y0hA 14 :P T0547 451 :PDFWGL 1y0hA 16 :PDARSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=101834 # 1l8bA.449.40 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 449 :SMPDFWGLE 1l8bA 68 :TVEDFWALY Number of specific fragments extracted= 1 number of extra gaps= 0 total=101835 # 1gy7A.449.45 read from T0547.t06.many.frag # found chain 1gy7A in training set T0547 449 :SMPDFWGLE 1gy7A 46 :GAKDIVEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101836 # 1zx8A.449.115 read from T0547.t06.many.frag # found chain 1zx8A in template set T0547 449 :SMPDFWGLE 1zx8A 104 :GLEDLKKIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101837 # 1umgA.449.183 read from T0547.t06.many.frag # found chain 1umgA in training set T0547 449 :SMPDFWGLE 1umgA 186 :EIYDLLALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101838 # 1v0aA.449.48 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)P451 (1v0aA)D51 because G (3-10) conformation "forbidden" or filtered. T0547 449 :SM 1v0aA 49 :TT T0547 452 :DFWGLE 1v0aA 52 :GYWGTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=101840 # 1t3tA.449.149 read from T0547.t06.many.frag # found chain 1t3tA in template set T0547 449 :SMPDFWGLE 1t3tA 142 :SLTDAEKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=101841 # 1xv5A.449.236 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)M450 (1xv5A)S1237 because Y (epsilon') conformation "forbidden" or filtered. T0547 449 :S 1xv5A 1236 :R T0547 451 :PDFWGLE 1xv5A 1238 :PAFIAIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=101843 # 1r0vA.449.250 read from T0547.t06.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)S449 (1r0vA)S251 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W454 (1r0vA)P256 because G (3-10) conformation "forbidden" or filtered. T0547 450 :MPDF 1r0vA 252 :VDDL T0547 455 :GLE 1r0vA 257 :HSE Number of specific fragments extracted= 2 number of extra gaps= 2 total=101845 # 2bj0A.449.56 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)G455 (2bj0A)S63 because G (3-10) conformation "forbidden" or filtered. T0547 449 :SMPDFW 2bj0A 57 :KVPYYS T0547 456 :LE 2bj0A 64 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=101847 # 1knwA.449.409 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 449 :SMPDFWGLE 1knwA 410 :TIEELLALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101848 # 1wcdJ.449.87 read from T0547.t06.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0547)S449 (1wcdJ)T88 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P451 (1wcdJ)Q90 because E (beta_S) conformation "forbidden" or filtered. T0547 450 :M 1wcdJ 89 :A T0547 452 :DFWGLE 1wcdJ 91 :NLPASY Number of specific fragments extracted= 2 number of extra gaps= 2 total=101850 # 2c1lA.449.319 read from T0547.t06.many.frag # found chain 2c1lA in template set Warning: unaligning (T0547)S449 (2c1lA)G320 because L (left) conformation "forbidden" or filtered. T0547 450 :MPDFWGLE 2c1lA 321 :TPEHSQLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=101851 # 1dy5A.449.49 read from T0547.t06.many.frag # found chain 1dy5A in training set T0547 449 :SMPDFWGLE 1dy5A 50 :SLADVQAVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=101852 # 1q52A.449.219 read from T0547.t06.many.frag # found chain 1q52A in training set T0547 449 :SMPDFWGLE 1q52A 220 :TAEQMHQMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=101853 # 1svsA.449.202 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)G455 (1svsA)K210 because G (3-10) conformation "forbidden" or filtered. T0547 449 :SMPDFW 1svsA 204 :QRSERK T0547 456 :LE 1svsA 211 :WI Number of specific fragments extracted= 2 number of extra gaps= 1 total=101855 # 1zhxA.449.256 read from T0547.t06.many.frag # found chain 1zhxA in training set Warning: unaligning (T0547)S449 (1zhxA)D253 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G455 (1zhxA)D259 because D (zeta) conformation "forbidden" or filtered. T0547 450 :MPDFW 1zhxA 254 :SKDSK T0547 456 :LE 1zhxA 260 :KE Number of specific fragments extracted= 2 number of extra gaps= 2 total=101857 # 2cfeA.449.132 read from T0547.t06.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)S449 (2cfeA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 450 :MPDFWGLE 2cfeA 134 :MNVVKAIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=101858 # 1f46A.449.85 read from T0547.t06.many.frag # found chain 1f46A in training set Warning: unaligning (T0547)P451 (1f46A)G92 because T (delta_L) conformation "forbidden" or filtered. T0547 449 :SM 1f46A 90 :SY T0547 452 :DFWGLE 1f46A 93 :DELQLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=101860 # 1hqz1.449.50 read from T0547.t06.many.frag # found chain 1hqz1 in template set Warning: unaligning (T0547)G455 (1hqz1)Q57 because G (3-10) conformation "forbidden" or filtered. T0547 449 :SMPDFW 1hqz1 51 :SFHDFL T0547 456 :LE 1hqz1 58 :LF Number of specific fragments extracted= 2 number of extra gaps= 1 total=101862 # 1mkaA.449.59 read from T0547.t06.many.frag # found chain 1mkaA in template set T0547 449 :SMPDFWGLE 1mkaA 60 :INPDLWFFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=101863 # 2arcA.449.92 read from T0547.t06.many.frag # found chain 2arcA in training set T0547 449 :SMPDFWGLE 2arcA 99 :RPRAYWHEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=101864 # 2eng.449.188 read from T0547.t06.many.frag # found chain 2eng in training set T0547 449 :SMPDFWGLE 2eng 189 :CPAELVART Number of specific fragments extracted= 1 number of extra gaps= 0 total=101865 # 1tu1A.449.120 read from T0547.t06.many.frag # found chain 1tu1A in template set Warning: unaligning (T0547)S449 (1tu1A)T119 because P (beta_P) conformation "forbidden" or filtered. T0547 450 :MPDFWGLE 1tu1A 120 :PADLPHHE Number of specific fragments extracted= 1 number of extra gaps= 1 total=101866 # 1zceA.449.98 read from T0547.t06.many.frag # found chain 1zceA in training set Warning: unaligning (T0547)G455 (1zceA)A105 because G (3-10) conformation "forbidden" or filtered. T0547 449 :SMPDFW 1zceA 99 :SLKDVK T0547 456 :LE 1zceA 106 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=101868 # 1iicA.449.256 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 449 :SMPDFWGLE 1iicA 290 :TKEEFEHNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=101869 # 1sqwA.449.148 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)G455 (1sqwA)K155 because G (3-10) conformation "forbidden" or filtered. T0547 449 :SMPDFW 1sqwA 149 :STQDCR T0547 456 :LE 1sqwA 156 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=101871 # 1y9lA.449.13 read from T0547.t06.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)G455 (1y9lA)S47 because G (3-10) conformation "forbidden" or filtered. T0547 449 :SMPDFW 1y9lA 41 :VSKDYF T0547 456 :LE 1y9lA 48 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=101873 # 1ko6A.449.52 read from T0547.t06.many.frag # found chain 1ko6A in template set Warning: unaligning (T0547)E457 (1ko6A)T737 because P (beta_P) conformation "forbidden" or filtered. T0547 449 :SMPDFWGL 1ko6A 729 :SMDDLAKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=101874 # 1cl8A.449.198 read from T0547.t06.many.frag # found chain 1cl8A in training set T0547 449 :SMPDFWGLE 1cl8A 200 :RLDRLTAAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=101875 # 1ojrA.449.219 read from T0547.t06.many.frag # found chain 1ojrA in training set T0547 449 :SMPDFWGLE 1ojrA 220 :TLDETFGLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101876 # 1l8bA.450.41 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 450 :MPDFWGLEQ 1l8bA 69 :VEDFWALYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=101877 # 1gy7A.450.46 read from T0547.t06.many.frag # found chain 1gy7A in training set T0547 450 :MPDFWGLEQ 1gy7A 47 :AKDIVEKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101878 # 1zx8A.450.116 read from T0547.t06.many.frag # found chain 1zx8A in template set T0547 450 :MPDFWGLEQ 1zx8A 105 :LEDLKKIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=101879 # 1t3tA.450.150 read from T0547.t06.many.frag # found chain 1t3tA in template set T0547 450 :MPDFWGLEQ 1t3tA 143 :LTDAEKLFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101880 # 1umgA.450.184 read from T0547.t06.many.frag # found chain 1umgA in training set T0547 450 :MPDFWGLEQ 1umgA 187 :IYDLLALIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=101881 # 1q52A.450.220 read from T0547.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)E457 (1q52A)G228 because T (delta_L) conformation "forbidden" or filtered. T0547 450 :MPDFWGL 1q52A 221 :AEQMHQM T0547 458 :Q 1q52A 229 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=101883 # 2bj0A.450.57 read from T0547.t06.many.frag # found chain 2bj0A in template set T0547 450 :MPDFWGLEQ 2bj0A 58 :VPYYSSLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101884 # 1v0aA.450.49 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)P451 (1v0aA)D51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D452 (1v0aA)G52 because P (beta_P) conformation "forbidden" or filtered. T0547 450 :M 1v0aA 50 :T T0547 453 :FWGLEQ 1v0aA 53 :YWGTVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=101886 # 2c1lA.450.320 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 450 :MPDFWGLEQ 2c1lA 321 :TPEHSQLDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=101887 # 1xv5A.450.237 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)M450 (1xv5A)S1237 because Y (epsilon') conformation "forbidden" or filtered. T0547 451 :PDFWGLEQ 1xv5A 1238 :PAFIAIKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=101888 # 1dy5A.450.50 read from T0547.t06.many.frag # found chain 1dy5A in training set T0547 450 :MPDFWGLEQ 1dy5A 51 :LADVQAVCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101889 # 1svsA.450.203 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)G455 (1svsA)K210 because G (3-10) conformation "forbidden" or filtered. T0547 450 :MPDFW 1svsA 205 :RSERK T0547 456 :LEQ 1svsA 211 :WIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=101891 # 1wcdJ.450.88 read from T0547.t06.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0547)P451 (1wcdJ)Q90 because E (beta_S) conformation "forbidden" or filtered. T0547 450 :M 1wcdJ 89 :A T0547 452 :DFWGLEQ 1wcdJ 91 :NLPASYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=101893 # 1iicA.450.257 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 450 :MPDFWGLEQ 1iicA 291 :KEEFEHNFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101894 # 2arcA.450.93 read from T0547.t06.many.frag # found chain 2arcA in training set T0547 450 :MPDFWGLEQ 2arcA 100 :PRAYWHEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101895 # 1r0vA.450.251 read from T0547.t06.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)G455 (1r0vA)H257 because G (3-10) conformation "forbidden" or filtered. T0547 450 :MPDFW 1r0vA 252 :VDDLP T0547 456 :LEQ 1r0vA 258 :SEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=101897 # 1knwA.450.410 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 450 :MPDFWGLEQ 1knwA 411 :IEELLALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101898 # 2cfeA.450.133 read from T0547.t06.many.frag # found chain 2cfeA in training set T0547 450 :MPDFWGLEQ 2cfeA 134 :MNVVKAIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101899 # 1zhxA.450.257 read from T0547.t06.many.frag # found chain 1zhxA in training set T0547 450 :MPDFWGLEQ 1zhxA 254 :SKDSKDKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101900 # 1cl8A.450.199 read from T0547.t06.many.frag # found chain 1cl8A in training set T0547 450 :MPDFWGLEQ 1cl8A 201 :LDRLTAANY Number of specific fragments extracted= 1 number of extra gaps= 0 total=101901 # 1mkaA.450.60 read from T0547.t06.many.frag # found chain 1mkaA in template set T0547 450 :MPDFWGLEQ 1mkaA 61 :NPDLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=101902 # 1hqz1.450.51 read from T0547.t06.many.frag # found chain 1hqz1 in template set T0547 450 :MPDFWGLEQ 1hqz1 52 :FHDFLQLFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=101903 # 1yc61.450.76 read from T0547.t06.many.frag # found chain 1yc61 in template set T0547 450 :MPDFWGLEQ 1yc61 112 :QAQAEAAFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=101904 # 2eng.450.189 read from T0547.t06.many.frag # found chain 2eng in training set Warning: unaligning (T0547)Q458 (2eng)G198 because T (delta_L) conformation "forbidden" or filtered. T0547 450 :MPDFWGLE 2eng 190 :PAELVART Number of specific fragments extracted= 1 number of extra gaps= 1 total=101905 # 1y9lA.450.14 read from T0547.t06.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)G455 (1y9lA)S47 because G (3-10) conformation "forbidden" or filtered. T0547 450 :MPDFW 1y9lA 42 :SKDYF T0547 456 :LEQ 1y9lA 48 :IPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=101907 # 1ng0A.450.161 read from T0547.t06.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)M450 (1ng0A)G162 because T (delta_L) conformation "forbidden" or filtered. T0547 451 :PDFWGLEQ 1ng0A 163 :GDGSSLLH Number of specific fragments extracted= 1 number of extra gaps= 1 total=101908 # 2fa1A.450.70 read from T0547.t06.many.frag # found chain 2fa1A in training set T0547 450 :MPDFWGLEQ 2fa1A 152 :DLTLWPTLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=101909 # 1sdeA.450.136 read from T0547.t06.many.frag # found chain 1sdeA in template set T0547 450 :MPDFWGLEQ 1sdeA 137 :YQDLITLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101910 # 1sqwA.450.149 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)G455 (1sqwA)K155 because G (3-10) conformation "forbidden" or filtered. T0547 450 :MPDFW 1sqwA 150 :TQDCR T0547 456 :LEQ 1sqwA 156 :VDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=101912 # 1ko6A.450.53 read from T0547.t06.many.frag # found chain 1ko6A in template set Warning: unaligning (T0547)Q458 (1ko6A)N738 because P (beta_P) conformation "forbidden" or filtered. T0547 450 :MPDFWGLE 1ko6A 730 :MDDLAKIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=101913 # 1l8bA.451.42 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 451 :PDFWGLEQN 1l8bA 70 :EDFWALYNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=101914 # 1gy7A.451.47 read from T0547.t06.many.frag # found chain 1gy7A in training set T0547 451 :PDFWGLEQN 1gy7A 48 :KDIVEKLVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101915 # 1q52A.451.221 read from T0547.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)E457 (1q52A)G228 because T (delta_L) conformation "forbidden" or filtered. T0547 451 :PDFWGL 1q52A 222 :EQMHQM T0547 458 :QN 1q52A 229 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=101917 # 1t3tA.451.151 read from T0547.t06.many.frag # found chain 1t3tA in template set T0547 451 :PDFWGLEQN 1t3tA 144 :TDAEKLFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=101918 # 1umgA.451.185 read from T0547.t06.many.frag # found chain 1umgA in training set T0547 451 :PDFWGLEQN 1umgA 188 :YDLLALIGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=101919 # 1zx8A.451.117 read from T0547.t06.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)Q458 (1zx8A)D113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1zx8A)G114 because T (delta_L) conformation "forbidden" or filtered. T0547 451 :PDFWGLE 1zx8A 106 :EDLKKIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=101920 # 2bj0A.451.58 read from T0547.t06.many.frag # found chain 2bj0A in template set T0547 451 :PDFWGLEQN 2bj0A 59 :PYYSSLLSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101921 # 1iicA.451.258 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 451 :PDFWGLEQN 1iicA 292 :EEFEHNFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=101922 # 2c1lA.451.321 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 451 :PDFWGLEQN 2c1lA 322 :PEHSQLDPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=101923 # 2arcA.451.94 read from T0547.t06.many.frag # found chain 2arcA in training set T0547 451 :PDFWGLEQN 2arcA 101 :RAYWHEWLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=101924 # 1svsA.451.204 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)G455 (1svsA)K210 because G (3-10) conformation "forbidden" or filtered. T0547 451 :PDFW 1svsA 206 :SERK T0547 456 :LEQN 1svsA 211 :WIHC Number of specific fragments extracted= 2 number of extra gaps= 1 total=101926 # 1v0aA.451.50 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)P451 (1v0aA)D51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1v0aA)S59 because P (beta_P) conformation "forbidden" or filtered. T0547 452 :DFWGLEQ 1v0aA 52 :GYWGTVY Number of specific fragments extracted= 1 number of extra gaps= 2 total=101927 # 1cl8A.451.200 read from T0547.t06.many.frag # found chain 1cl8A in training set Warning: unaligning (T0547)N459 (1cl8A)G210 because T (delta_L) conformation "forbidden" or filtered. T0547 451 :PDFWGLEQ 1cl8A 202 :DRLTAANY Number of specific fragments extracted= 1 number of extra gaps= 1 total=101928 # 2cfeA.451.134 read from T0547.t06.many.frag # found chain 2cfeA in training set T0547 451 :PDFWGLEQN 2cfeA 135 :NVVKAIEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101929 # 1xv5A.451.238 read from T0547.t06.many.frag # found chain 1xv5A in training set T0547 451 :PDFWGLEQN 1xv5A 1238 :PAFIAIKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101930 # 1knwA.451.411 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 451 :PDFWGLEQN 1knwA 412 :EELLALELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101931 # 1mkaA.451.61 read from T0547.t06.many.frag # found chain 1mkaA in template set Warning: unaligning (T0547)N459 because of BadResidue code BAD_PEPTIDE in next template residue (1mkaA)F71 T0547 451 :PDFWGLEQ 1mkaA 62 :PDLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 1 total=101932 # 1dy5A.451.51 read from T0547.t06.many.frag # found chain 1dy5A in training set T0547 451 :PDFWGLEQN 1dy5A 52 :ADVQAVCSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=101933 # 1on3A.451.477 read from T0547.t06.many.frag # found chain 1on3A in template set T0547 451 :PDFWGLEQN 1on3A 479 :YVAAARGQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101934 # 2fa1A.451.71 read from T0547.t06.many.frag # found chain 2fa1A in training set T0547 451 :PDFWGLEQN 2fa1A 153 :LTLWPTLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=101935 # 1yc61.451.77 read from T0547.t06.many.frag # found chain 1yc61 in template set T0547 451 :PDFWGLEQN 1yc61 113 :AQAEAAFQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=101936 # 1no7A.451.382 read from T0547.t06.many.frag # found chain 1no7A in template set T0547 451 :PDFWGLEQN 1no7A 833 :DRVYATLQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=101937 # 1qwyA.451.101 read from T0547.t06.many.frag # found chain 1qwyA in training set T0547 451 :PDFWGLEQN 1qwyA 127 :QHINQYGYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=101938 # 1r0vA.451.252 read from T0547.t06.many.frag # found chain 1r0vA in template set Warning: unaligning (T0547)G455 (1r0vA)H257 because G (3-10) conformation "forbidden" or filtered. T0547 451 :PDFW 1r0vA 253 :DDLP T0547 456 :LEQN 1r0vA 258 :SEYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=101940 # 1w2xA.451.625 read from T0547.t06.many.frag # found chain 1w2xA in template set T0547 451 :PDFWGLEQN 1w2xA 2101 :SRMVAKGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101941 # 1zhxA.451.258 read from T0547.t06.many.frag # found chain 1zhxA in training set T0547 451 :PDFWGLEQN 1zhxA 255 :KDSKDKEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101942 # 1d0cA.451.284 read from T0547.t06.many.frag # found chain 1d0cA in training set Warning: unaligning (T0547)E457 (1d0cA)G329 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1d0cA)R331 because Y (epsilon') conformation "forbidden" or filtered. T0547 451 :PDFWGL 1d0cA 323 :EWFAAL T0547 458 :Q 1d0cA 330 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=101944 # 1wcdJ.451.89 read from T0547.t06.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0547)P451 (1wcdJ)Q90 because E (beta_S) conformation "forbidden" or filtered. T0547 452 :DFWGLEQN 1wcdJ 91 :NLPASYNY Number of specific fragments extracted= 1 number of extra gaps= 1 total=101945 # 1sdeA.451.137 read from T0547.t06.many.frag # found chain 1sdeA in template set T0547 451 :PDFWGLEQN 1sdeA 138 :QDLITLSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=101946 # 1ng0A.451.162 read from T0547.t06.many.frag # found chain 1ng0A in template set T0547 451 :PDFWGLEQN 1ng0A 163 :GDGSSLLHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=101947 # 1l8bA.452.43 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 452 :DFWGLEQNF 1l8bA 71 :DFWALYNHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=101948 # 1q52A.452.222 read from T0547.t06.many.frag # found chain 1q52A in training set T0547 452 :DFWGLEQNF 1q52A 223 :QMHQMGAVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=101949 # 1gy7A.452.48 read from T0547.t06.many.frag # found chain 1gy7A in training set T0547 452 :DFWGLEQNF 1gy7A 49 :DIVEKLVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101950 # 1t3tA.452.152 read from T0547.t06.many.frag # found chain 1t3tA in template set T0547 452 :DFWGLEQNF 1t3tA 145 :DAEKLFIHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=101951 # 1iicA.452.259 read from T0547.t06.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)N459 (1iicA)G300 because P (beta_P) conformation "forbidden" or filtered. T0547 452 :DFWGLEQ 1iicA 293 :EFEHNFI T0547 460 :F 1iicA 301 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=101953 # 1no7A.452.383 read from T0547.t06.many.frag # found chain 1no7A in template set T0547 452 :DFWGLEQNF 1no7A 834 :RVYATLQNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=101954 # 2bj0A.452.59 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)G455 (2bj0A)S63 because G (3-10) conformation "forbidden" or filtered. T0547 452 :DFW 2bj0A 60 :YYS T0547 456 :LEQNF 2bj0A 64 :LLSSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=101956 # 1umgA.452.186 read from T0547.t06.many.frag # found chain 1umgA in training set T0547 452 :DFWGLEQNF 1umgA 189 :DLLALIGTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=101957 # 2arcA.452.95 read from T0547.t06.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)F453 (2arcA)Y103 because G (3-10) conformation "forbidden" or filtered. T0547 452 :D 2arcA 102 :A T0547 454 :WGLEQNF 2arcA 104 :WHEWLNW Number of specific fragments extracted= 2 number of extra gaps= 1 total=101959 # 1v0aA.452.51 read from T0547.t06.many.frag # found chain 1v0aA in template set T0547 452 :DFWGLEQNF 1v0aA 52 :GYWGTVYSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101960 # 1cl8A.452.201 read from T0547.t06.many.frag # found chain 1cl8A in training set Warning: unaligning (T0547)Q458 (1cl8A)Y209 because L (left) conformation "forbidden" or filtered. T0547 452 :DFWGLE 1cl8A 203 :RLTAAN T0547 459 :NF 1cl8A 210 :GM Number of specific fragments extracted= 2 number of extra gaps= 1 total=101962 # 2c1lA.452.322 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 452 :DFWGLEQNF 2c1lA 323 :EHSQLDPYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101963 # 2cfeA.452.135 read from T0547.t06.many.frag # found chain 2cfeA in training set T0547 452 :DFWGLEQNF 2cfeA 136 :VVKAIEAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=101964 # 1zx8A.452.118 read from T0547.t06.many.frag # found chain 1zx8A in template set Warning: unaligning (T0547)N459 (1zx8A)G114 because T (delta_L) conformation "forbidden" or filtered. T0547 452 :DFWGLEQ 1zx8A 107 :DLKKIKD T0547 460 :F 1zx8A 115 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=101966 # 1qwyA.452.102 read from T0547.t06.many.frag # found chain 1qwyA in training set T0547 452 :DFWGLEQNF 1qwyA 128 :HINQYGYQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=101967 # 1svsA.452.205 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 452 :DFWGLEQNF 1svsA 207 :ERKKWIHCF Number of specific fragments extracted= 1 number of extra gaps= 0 total=101968 # 1xv5A.452.239 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)F460 (1xv5A)G1247 because T (delta_L) conformation "forbidden" or filtered. T0547 452 :DFWGLEQN 1xv5A 1239 :AFIAIKEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=101969 # 1on3A.452.478 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)E457 (1on3A)G485 because T (delta_L) conformation "forbidden" or filtered. T0547 452 :DFWGL 1on3A 480 :VAAAR T0547 458 :QNF 1on3A 486 :QVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=101971 # 2fa1A.452.72 read from T0547.t06.many.frag # found chain 2fa1A in training set T0547 452 :DFWGLEQNF 2fa1A 154 :TLWPTLQRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=101972 # 1mkaA.452.62 read from T0547.t06.many.frag # found chain 1mkaA in template set Warning: unaligning (T0547)N459 because of BadResidue code BAD_PEPTIDE in next template residue (1mkaA)F71 Warning: unaligning (T0547)F460 because of BadResidue code BAD_PEPTIDE at template residue (1mkaA)F71 T0547 452 :DFWGLEQ 1mkaA 63 :DLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 1 total=101973 # 1w2xA.452.626 read from T0547.t06.many.frag # found chain 1w2xA in template set Warning: unaligning (T0547)E457 (1w2xA)G2107 because L (left) conformation "forbidden" or filtered. T0547 452 :DFWGL 1w2xA 2102 :RMVAK T0547 458 :QNF 1w2xA 2108 :VIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=101975 # 2bvlA.452.354 read from T0547.t06.many.frag # found chain 2bvlA in template set T0547 452 :DFWGLEQNF 2bvlA 355 :DKSEIFSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=101976 # 1ursA.452.258 read from T0547.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)E457 (1ursA)K264 because L (left) conformation "forbidden" or filtered. T0547 452 :DFWGL 1ursA 259 :DIEKA T0547 458 :QNF 1ursA 265 :IDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=101978 # 1g8kA.452.631 read from T0547.t06.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)F460 (1g8kA)G640 because S (epsilon) conformation "forbidden" or filtered. T0547 452 :DFWGLEQN 1g8kA 632 :RLRKSGNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=101979 # 1dy5A.452.52 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N459 (1dy5A)Q60 because Y (epsilon') conformation "forbidden" or filtered. T0547 452 :DFWGLEQ 1dy5A 53 :DVQAVCS T0547 460 :F 1dy5A 61 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=101981 # 1hx0A.452.275 read from T0547.t06.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)F460 (1hx0A)W284 because G (3-10) conformation "forbidden" or filtered. T0547 452 :DFWGLEQN 1hx0A 276 :YLKNWGEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=101982 # 1yc61.452.78 read from T0547.t06.many.frag # found chain 1yc61 in template set T0547 452 :DFWGLEQNF 1yc61 114 :QAEAAFQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=101983 # 1knwA.452.412 read from T0547.t06.many.frag # found chain 1knwA in template set T0547 452 :DFWGLEQNF 1knwA 413 :ELLALELLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=101984 # 1ng0A.452.163 read from T0547.t06.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)N459 (1ng0A)T171 because P (beta_P) conformation "forbidden" or filtered. T0547 452 :DFWGLEQ 1ng0A 164 :DGSSLLH T0547 460 :F 1ng0A 172 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=101986 1pl3A expands to /projects/compbio/data/pdb/1pl3.pdb.gz 1pl3A:Bad short name: OE for alphabet: pdb_atoms # 1pl3A.452.91 read from T0547.t06.many.frag # adding 1pl3A to template set # found chain 1pl3A in template set Warning: unaligning (T0547)G455 (1pl3A)A95 because P (beta_P) conformation "forbidden" or filtered. T0547 452 :DFW 1pl3A 92 :QPT T0547 456 :LEQNF 1pl3A 96 :YTGTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=101988 # 1q52A.453.223 read from T0547.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)E457 (1q52A)G228 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1q52A)A232 because Y (epsilon') conformation "forbidden" or filtered. T0547 453 :FWGL 1q52A 224 :MHQM T0547 458 :QNF 1q52A 229 :AVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=101990 # 1gy7A.453.49 read from T0547.t06.many.frag # found chain 1gy7A in training set T0547 453 :FWGLEQNFP 1gy7A 50 :IVEKLVSLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=101991 # 1t3tA.453.153 read from T0547.t06.many.frag # found chain 1t3tA in template set T0547 453 :FWGLEQNFP 1t3tA 146 :AEKLFIHHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=101992 # 1iicA.453.260 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 453 :FWGLEQNFP 1iicA 294 :FEHNFIGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=101993 # 1no7A.453.384 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P461 (1no7A)V843 because D (zeta) conformation "forbidden" or filtered. T0547 453 :FWGLEQNF 1no7A 835 :VYATLQNM Number of specific fragments extracted= 1 number of extra gaps= 1 total=101994 # 1l8bA.453.44 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 453 :FWGLEQNFP 1l8bA 72 :FWALYNHIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=101995 # 1qwyA.453.103 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)E457 (1qwyA)G133 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1qwyA)N137 because G (3-10) conformation "forbidden" or filtered. T0547 453 :FWGL 1qwyA 129 :INQY T0547 458 :QNF 1qwyA 134 :YQS Number of specific fragments extracted= 2 number of extra gaps= 2 total=101997 # 2cfeA.453.136 read from T0547.t06.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)P461 (2cfeA)S145 because Y (epsilon') conformation "forbidden" or filtered. T0547 453 :FWGLEQNF 2cfeA 137 :VKAIEAEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=101998 # 1v0aA.453.52 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)G455 (1v0aA)G55 because Y (epsilon') conformation "forbidden" or filtered. T0547 453 :FW 1v0aA 53 :YW T0547 456 :LEQNFP 1v0aA 56 :TVYSLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102000 # 2bj0A.453.60 read from T0547.t06.many.frag # found chain 2bj0A in template set T0547 453 :FWGLEQNFP 2bj0A 61 :YSSLLSSSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=102001 # 1on3A.453.479 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)E457 (1on3A)G485 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1on3A)D489 because Y (epsilon') conformation "forbidden" or filtered. T0547 453 :FWGL 1on3A 481 :AAAR T0547 458 :QNF 1on3A 486 :QVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=102003 # 1w2xA.453.627 read from T0547.t06.many.frag # found chain 1w2xA in template set Warning: unaligning (T0547)E457 (1w2xA)G2107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1w2xA)K2111 because Y (epsilon') conformation "forbidden" or filtered. T0547 453 :FWGL 1w2xA 2103 :MVAK T0547 458 :QNF 1w2xA 2108 :VIS Number of specific fragments extracted= 2 number of extra gaps= 2 total=102005 # 2c1lA.453.323 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 453 :FWGLEQNFP 2c1lA 324 :HSQLDPYAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=102006 # 1svsA.453.206 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)N459 (1svsA)C214 because G (3-10) conformation "forbidden" or filtered. T0547 453 :FWGLEQ 1svsA 208 :RKKWIH T0547 460 :FP 1svsA 215 :FE Number of specific fragments extracted= 2 number of extra gaps= 1 total=102008 # 1hx0A.453.276 read from T0547.t06.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)G455 (1hx0A)N279 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (1hx0A)G281 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 453 :FW 1hx0A 277 :LK T0547 456 :L 1hx0A 280 :W T0547 458 :QNF 1hx0A 282 :EGW Number of specific fragments extracted= 3 number of extra gaps= 3 total=102011 # 1g8kA.453.632 read from T0547.t06.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)P461 (1g8kA)V641 because E (beta_S) conformation "forbidden" or filtered. T0547 453 :FWGLEQNF 1g8kA 633 :LRKSGNNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=102012 # 1cl8A.453.202 read from T0547.t06.many.frag # found chain 1cl8A in training set Warning: unaligning (T0547)Q458 (1cl8A)Y209 because L (left) conformation "forbidden" or filtered. T0547 453 :FWGLE 1cl8A 204 :LTAAN T0547 459 :NFP 1cl8A 210 :GMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102014 # 1ursA.453.259 read from T0547.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)E457 (1ursA)K264 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1ursA)G268 because E (beta_S) conformation "forbidden" or filtered. T0547 453 :FWGL 1ursA 260 :IEKA T0547 458 :QNF 1ursA 265 :IDF Number of specific fragments extracted= 2 number of extra gaps= 2 total=102016 # 2arcA.453.96 read from T0547.t06.many.frag # found chain 2arcA in training set T0547 453 :FWGLEQNFP 2arcA 103 :YWHEWLNWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=102017 # 2bvlA.453.355 read from T0547.t06.many.frag # found chain 2bvlA in template set T0547 453 :FWGLEQNFP 2bvlA 356 :KSEIFSSLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=102018 # 1u8xX.453.325 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)N459 (1u8xX)S309 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1u8xX)N312 T0547 453 :FWGLEQ 1u8xX 303 :MITREQ T0547 460 :F 1u8xX 310 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=102020 # 1xv5A.453.240 read from T0547.t06.many.frag # found chain 1xv5A in training set T0547 453 :FWGLEQNFP 1xv5A 1240 :FIAIKEKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=102021 # 1umgA.453.187 read from T0547.t06.many.frag # found chain 1umgA in training set T0547 453 :FWGLEQNFP 1umgA 190 :LLALIGTPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=102022 # 2fa1A.453.73 read from T0547.t06.many.frag # found chain 2fa1A in training set T0547 453 :FWGLEQNFP 2fa1A 155 :LWPTLQRFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=102023 # 1t6eX.453.184 read from T0547.t06.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)N459 (1t6eX)S191 because G (3-10) conformation "forbidden" or filtered. T0547 453 :FWGLEQ 1t6eX 185 :WPQFTQ T0547 460 :FP 1t6eX 192 :MP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102025 # 1qg8A.453.193 read from T0547.t06.many.frag # found chain 1qg8A in training set Warning: unaligning (T0547)N459 (1qg8A)F201 because G (3-10) conformation "forbidden" or filtered. T0547 453 :FWGLEQ 1qg8A 195 :FWRVNH T0547 460 :FP 1qg8A 202 :YP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102027 # 1pl3A.453.92 read from T0547.t06.many.frag # found chain 1pl3A in template set Warning: unaligning (T0547)G455 (1pl3A)A95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1pl3A)T101 because E (beta_S) conformation "forbidden" or filtered. T0547 453 :FW 1pl3A 93 :PT T0547 456 :LEQNF 1pl3A 96 :YTGTA Number of specific fragments extracted= 2 number of extra gaps= 2 total=102029 # 1sg4A.453.174 read from T0547.t06.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 453 :FWGLEQNF 1sg4A 175 :ALQVGIVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=102030 # 2a6zA.453.135 read from T0547.t06.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)N459 (2a6zA)S147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (2a6zA)A149 because Y (epsilon') conformation "forbidden" or filtered. T0547 453 :FWGLEQ 2a6zA 141 :TKIYDQ T0547 460 :F 2a6zA 148 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=102032 # 2bopA.453.60 read from T0547.t06.many.frag # found chain 2bopA in training set T0547 453 :FWGLEQNFP 2bopA 386 :RQDFLKHVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=102033 # 1q52A.454.224 read from T0547.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)E457 (1q52A)G228 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1q52A)A232 because Y (epsilon') conformation "forbidden" or filtered. T0547 454 :WGL 1q52A 225 :HQM T0547 458 :QNF 1q52A 229 :AVN T0547 462 :I 1q52A 233 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=102036 # 1no7A.454.385 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P461 (1no7A)V843 because D (zeta) conformation "forbidden" or filtered. T0547 454 :WGLEQNF 1no7A 836 :YATLQNM T0547 462 :I 1no7A 844 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=102038 # 1iicA.454.261 read from T0547.t06.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)Q458 (1iicA)I299 because D (zeta) conformation "forbidden" or filtered. T0547 454 :WGLE 1iicA 295 :EHNF T0547 459 :NFPI 1iicA 300 :GEES Number of specific fragments extracted= 2 number of extra gaps= 1 total=102040 # 1v0aA.454.53 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)G455 (1v0aA)G55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1v0aA)S59 because P (beta_P) conformation "forbidden" or filtered. T0547 454 :W 1v0aA 54 :W T0547 456 :LEQ 1v0aA 56 :TVY T0547 460 :FPI 1v0aA 60 :LPD Number of specific fragments extracted= 3 number of extra gaps= 2 total=102043 # 1t3tA.454.154 read from T0547.t06.many.frag # found chain 1t3tA in template set T0547 454 :WGLEQNFPI 1t3tA 147 :EKLFIHHQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=102044 # 1gy7A.454.50 read from T0547.t06.many.frag # found chain 1gy7A in training set T0547 454 :WGLEQNFPI 1gy7A 51 :VEKLVSLPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=102045 # 1qwyA.454.104 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)E457 (1qwyA)G133 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F460 (1qwyA)S136 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1qwyA)N137 because G (3-10) conformation "forbidden" or filtered. T0547 454 :WGL 1qwyA 130 :NQY T0547 458 :QN 1qwyA 134 :YQ T0547 462 :I 1qwyA 138 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=102048 # 1t6eX.454.185 read from T0547.t06.many.frag # found chain 1t6eX in training set T0547 454 :WGLEQNFPI 1t6eX 186 :PQFTQSMPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=102049 # 1u8xX.454.326 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)N459 (1u8xX)S309 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1u8xX)N312 Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1u8xX)N312 T0547 454 :WGLEQ 1u8xX 304 :ITREQ T0547 460 :F 1u8xX 310 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=102051 # 1hx0A.454.277 read from T0547.t06.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)G455 (1hx0A)N279 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E457 (1hx0A)G281 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 454 :W 1hx0A 278 :K T0547 456 :L 1hx0A 280 :W T0547 458 :QNF 1hx0A 282 :EGW T0547 462 :I 1hx0A 286 :F Number of specific fragments extracted= 4 number of extra gaps= 3 total=102055 # 1g8kA.454.633 read from T0547.t06.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)F460 (1g8kA)G640 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1g8kA)V641 because E (beta_S) conformation "forbidden" or filtered. T0547 454 :WGLEQN 1g8kA 634 :RKSGNN T0547 462 :I 1g8kA 642 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=102057 # 1on3A.454.480 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)P461 (1on3A)D489 because Y (epsilon') conformation "forbidden" or filtered. T0547 454 :WGLEQNF 1on3A 482 :AARGQVD T0547 462 :I 1on3A 490 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=102059 # 2cfeA.454.137 read from T0547.t06.many.frag # found chain 2cfeA in training set Warning: unaligning (T0547)P461 (2cfeA)S145 because Y (epsilon') conformation "forbidden" or filtered. T0547 454 :WGLEQNF 2cfeA 138 :KAIEAEG T0547 462 :I 2cfeA 146 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=102061 # 2arcA.454.97 read from T0547.t06.many.frag # found chain 2arcA in training set T0547 454 :WGLEQNFPI 2arcA 104 :WHEWLNWPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=102062 # 2a6zA.454.136 read from T0547.t06.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)Q458 (2a6zA)Q146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (2a6zA)S147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (2a6zA)A149 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (2a6zA)S150 because Y (epsilon') conformation "forbidden" or filtered. T0547 454 :WGLE 2a6zA 142 :KIYD T0547 460 :F 2a6zA 148 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=102064 # 1w2xA.454.628 read from T0547.t06.many.frag # found chain 1w2xA in template set Warning: unaligning (T0547)E457 (1w2xA)G2107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1w2xA)K2111 because Y (epsilon') conformation "forbidden" or filtered. T0547 454 :WGL 1w2xA 2104 :VAK T0547 458 :QNF 1w2xA 2108 :VIS T0547 462 :I 1w2xA 2112 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=102067 # 1svsA.454.207 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)G455 (1svsA)K210 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1svsA)C214 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (1svsA)G217 because L (left) conformation "forbidden" or filtered. T0547 454 :W 1svsA 209 :K T0547 456 :LEQ 1svsA 211 :WIH T0547 460 :FP 1svsA 215 :FE Number of specific fragments extracted= 3 number of extra gaps= 3 total=102070 # 2b4vA.454.327 read from T0547.t06.many.frag # found chain 2b4vA in training set Warning: unaligning (T0547)G455 (2b4vA)H348 because G (3-10) conformation "forbidden" or filtered. T0547 454 :W 2b4vA 347 :A T0547 456 :LEQNFPI 2b4vA 349 :LPRYPDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=102072 # 1ursA.454.260 read from T0547.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)P461 (1ursA)G268 because E (beta_S) conformation "forbidden" or filtered. T0547 454 :WGLEQNF 1ursA 261 :EKAKIDF T0547 462 :I 1ursA 269 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=102074 # 1cl8A.454.203 read from T0547.t06.many.frag # found chain 1cl8A in training set Warning: unaligning (T0547)Q458 (1cl8A)Y209 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1cl8A)G210 because T (delta_L) conformation "forbidden" or filtered. T0547 454 :WGLE 1cl8A 205 :TAAN T0547 460 :FPI 1cl8A 211 :MPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=102076 # 1pgl2.454.274 read from T0547.t06.many.frag # found chain 1pgl2 in template set T0547 454 :WGLEQNFPI 1pgl2 275 :TINFEAFPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=102077 # 1pl3A.454.93 read from T0547.t06.many.frag # found chain 1pl3A in template set Warning: unaligning (T0547)G455 (1pl3A)A95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1pl3A)T101 because E (beta_S) conformation "forbidden" or filtered. T0547 454 :W 1pl3A 94 :T T0547 456 :LEQNF 1pl3A 96 :YTGTA T0547 462 :I 1pl3A 102 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=102080 # 2c1lA.454.324 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 454 :WGLEQNFPI 2c1lA 325 :SQLDPYAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=102081 # 2bvlA.454.356 read from T0547.t06.many.frag # found chain 2bvlA in template set T0547 454 :WGLEQNFPI 2bvlA 357 :SEIFSSLGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=102082 # 1l8bA.454.45 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 454 :WGLEQNFPI 1l8bA 73 :WALYNHIQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102083 # 1sg4A.454.175 read from T0547.t06.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 454 :WGLEQNF 1sg4A 176 :LQVGIVD T0547 462 :I 1sg4A 184 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=102085 # 2bj0A.454.61 read from T0547.t06.many.frag # found chain 2bj0A in template set T0547 454 :WGLEQNFPI 2bj0A 62 :SSLLSSSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102086 # 1qg8A.454.194 read from T0547.t06.many.frag # found chain 1qg8A in training set T0547 454 :WGLEQNFPI 1qg8A 196 :WRVNHFYPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=102087 # 1w0pA.454.316 read from T0547.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)G455 (1w0pA)N318 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1w0pA)I322 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (1w0pA)W325 because G (3-10) conformation "forbidden" or filtered. T0547 454 :W 1w0pA 317 :Q T0547 456 :LEQ 1w0pA 319 :GDR T0547 460 :FP 1w0pA 323 :KP Number of specific fragments extracted= 3 number of extra gaps= 3 total=102090 # 1kcfA.454.27 read from T0547.t06.many.frag # found chain 1kcfA in template set T0547 454 :WGLEQNFPI 1kcfA 28 :LRRIVDSPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=102091 # 1no7A.455.386 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P461 (1no7A)V843 because D (zeta) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1no7A 837 :ATLQNM T0547 462 :IM 1no7A 844 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102093 # 1t6eX.455.186 read from T0547.t06.many.frag # found chain 1t6eX in training set T0547 455 :GLEQNFPIM 1t6eX 187 :QFTQSMPYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=102094 # 1q52A.455.225 read from T0547.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)E457 (1q52A)G228 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1q52A)V230 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1q52A)A232 because Y (epsilon') conformation "forbidden" or filtered. T0547 455 :GL 1q52A 226 :QM T0547 458 :Q 1q52A 229 :A T0547 460 :F 1q52A 231 :N T0547 462 :IM 1q52A 233 :VA Number of specific fragments extracted= 4 number of extra gaps= 3 total=102098 # 1iicA.455.262 read from T0547.t06.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)I462 (1iicA)S303 because L (left) conformation "forbidden" or filtered. T0547 455 :GLEQNFP 1iicA 296 :HNFIGEE T0547 463 :M 1iicA 304 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=102100 # 1v0aA.455.54 read from T0547.t06.many.frag # found chain 1v0aA in template set T0547 455 :GLEQNFPIM 1v0aA 55 :GTVYSLPDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=102101 # 1gy7A.455.51 read from T0547.t06.many.frag # found chain 1gy7A in training set T0547 455 :GLEQNFPIM 1gy7A 52 :EKLVSLPFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=102102 # 1hx0A.455.278 read from T0547.t06.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1hx0A 279 :NWGEGW T0547 462 :IM 1hx0A 286 :FM Number of specific fragments extracted= 2 number of extra gaps= 1 total=102104 # 1qwyA.455.105 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)E457 (1qwyA)G133 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1qwyA)N137 because G (3-10) conformation "forbidden" or filtered. T0547 455 :GL 1qwyA 131 :QY T0547 458 :QNF 1qwyA 134 :YQS T0547 462 :IM 1qwyA 138 :VG Number of specific fragments extracted= 3 number of extra gaps= 2 total=102107 # 1g8kA.455.634 read from T0547.t06.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)F460 (1g8kA)G640 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1g8kA)V641 because E (beta_S) conformation "forbidden" or filtered. T0547 455 :GLEQN 1g8kA 635 :KSGNN T0547 462 :IM 1g8kA 642 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=102109 # 1tr9A.455.281 read from T0547.t06.many.frag # found chain 1tr9A in training set T0547 455 :GLEQNFPIM 1tr9A 281 :EVLDNLPIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=102110 # 1t3tA.455.155 read from T0547.t06.many.frag # found chain 1t3tA in template set T0547 455 :GLEQNFPIM 1t3tA 148 :KLFIHHQPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=102111 # 1u8xX.455.327 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)Q458 (1u8xX)Q308 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (1u8xX)S309 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1u8xX)N312 Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1u8xX)N312 Warning: unaligning (T0547)M463 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1u8xX)S313 T0547 455 :GLE 1u8xX 305 :TRE T0547 460 :F 1u8xX 310 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=102113 # 1pgl2.455.275 read from T0547.t06.many.frag # found chain 1pgl2 in template set T0547 455 :GLEQNFPIM 1pgl2 276 :INFEAFPHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=102114 # 1on3A.455.481 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)N459 (1on3A)V487 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1on3A)D489 because Y (epsilon') conformation "forbidden" or filtered. T0547 455 :GLEQ 1on3A 483 :ARGQ T0547 460 :F 1on3A 488 :D T0547 462 :IM 1on3A 490 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=102117 # 2b4vA.455.328 read from T0547.t06.many.frag # found chain 2b4vA in training set Warning: unaligning (T0547)G455 (2b4vA)H348 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N459 (2b4vA)Y352 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQ 2b4vA 349 :LPR T0547 460 :FPIM 2b4vA 353 :PDFS Number of specific fragments extracted= 2 number of extra gaps= 2 total=102119 # 2a6zA.455.137 read from T0547.t06.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)Q458 (2a6zA)Q146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (2a6zA)A149 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (2a6zA)S150 because Y (epsilon') conformation "forbidden" or filtered. T0547 455 :GLE 2a6zA 143 :IYD T0547 459 :NF 2a6zA 147 :SF T0547 463 :M 2a6zA 151 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=102122 # 1pl3A.455.94 read from T0547.t06.many.frag # found chain 1pl3A in template set Warning: unaligning (T0547)G455 (1pl3A)A95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1pl3A)T101 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNF 1pl3A 96 :YTGTA T0547 462 :IM 1pl3A 102 :LT Number of specific fragments extracted= 2 number of extra gaps= 2 total=102124 # 1wuiL.455.335 read from T0547.t06.many.frag # found chain 1wuiL in training set Warning: unaligning (T0547)G455 (1wuiL)K354 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1wuiL)K360 because D (zeta) conformation "forbidden" or filtered. T0547 456 :LEQNF 1wuiL 355 :GQTQP T0547 462 :IM 1wuiL 361 :YT Number of specific fragments extracted= 2 number of extra gaps= 2 total=102126 # 1ursA.455.261 read from T0547.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)E457 (1ursA)K264 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1ursA)G268 because E (beta_S) conformation "forbidden" or filtered. T0547 455 :GL 1ursA 262 :KA T0547 458 :QNF 1ursA 265 :IDF T0547 462 :IM 1ursA 269 :VT Number of specific fragments extracted= 3 number of extra gaps= 2 total=102129 # 1w2xA.455.629 read from T0547.t06.many.frag # found chain 1w2xA in template set Warning: unaligning (T0547)E457 (1w2xA)G2107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1w2xA)K2111 because Y (epsilon') conformation "forbidden" or filtered. T0547 455 :GL 1w2xA 2105 :AK T0547 458 :QNF 1w2xA 2108 :VIS T0547 462 :IM 1w2xA 2112 :EL Number of specific fragments extracted= 3 number of extra gaps= 2 total=102132 # 1fo8A.455.257 read from T0547.t06.many.frag # found chain 1fo8A in training set T0547 455 :GLEQNFPIM 1fo8A 362 :ARVYGAPQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102133 # 1sg4A.455.176 read from T0547.t06.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1sg4A 177 :QVGIVD T0547 462 :IM 1sg4A 184 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=102135 # 2bvlA.455.357 read from T0547.t06.many.frag # found chain 2bvlA in template set T0547 455 :GLEQNFPIM 2bvlA 358 :EIFSSLGDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=102136 # 1m15A.455.251 read from T0547.t06.many.frag # found chain 1m15A in training set T0547 455 :GLEQNFPIM 1m15A 252 :NIESKLPFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=102137 # 1kcfA.455.28 read from T0547.t06.many.frag # found chain 1kcfA in template set T0547 455 :GLEQNFPIM 1kcfA 29 :RRIVDSPIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=102138 # 1zbxB.455.47 read from T0547.t06.many.frag # found chain 1zbxB in template set T0547 455 :GLEQNFPIM 1zbxB 527 :AMIDQMNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=102139 # 1nlnA.455.144 read from T0547.t06.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 455 :GLEQNF 1nlnA 145 :PTMNLI T0547 462 :IM 1nlnA 152 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=102141 # 1svsA.455.208 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)I462 (1svsA)G217 because L (left) conformation "forbidden" or filtered. T0547 455 :GLEQNFP 1svsA 210 :KWIHCFE T0547 463 :M 1svsA 218 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=102143 # 1cl8A.455.204 read from T0547.t06.many.frag # found chain 1cl8A in training set Warning: unaligning (T0547)N459 (1cl8A)G210 because T (delta_L) conformation "forbidden" or filtered. T0547 455 :GLEQ 1cl8A 206 :AANY T0547 460 :FPIM 1cl8A 211 :MPIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=102145 # 2bjiA.455.260 read from T0547.t06.many.frag # found chain 2bjiA in training set T0547 455 :GLEQNFPIM 2bjiA 1261 :RIAKEIQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=102146 # 1t6eX.456.187 read from T0547.t06.many.frag # found chain 1t6eX in training set T0547 456 :LEQNFPIMP 1t6eX 188 :FTQSMPYTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=102147 # 1no7A.456.387 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)N459 (1no7A)N841 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1no7A)V843 because D (zeta) conformation "forbidden" or filtered. T0547 456 :LEQ 1no7A 838 :TLQ T0547 460 :F 1no7A 842 :M T0547 462 :IMP 1no7A 844 :VPE Number of specific fragments extracted= 3 number of extra gaps= 2 total=102150 # 1q52A.456.226 read from T0547.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)E457 (1q52A)G228 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1q52A)A232 because Y (epsilon') conformation "forbidden" or filtered. T0547 456 :L 1q52A 227 :M T0547 458 :QNF 1q52A 229 :AVN T0547 462 :IMP 1q52A 233 :VAE Number of specific fragments extracted= 3 number of extra gaps= 2 total=102153 # 1hx0A.456.279 read from T0547.t06.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 456 :LEQNF 1hx0A 280 :WGEGW T0547 462 :IMP 1hx0A 286 :FMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102155 # 1v0aA.456.55 read from T0547.t06.many.frag # found chain 1v0aA in template set T0547 456 :LEQNFPIMP 1v0aA 56 :TVYSLPDGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=102156 # 1tr9A.456.282 read from T0547.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)N459 (1tr9A)N285 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1tr9A)E290 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQ 1tr9A 282 :VLD T0547 460 :FPIM 1tr9A 286 :LPIM Number of specific fragments extracted= 2 number of extra gaps= 2 total=102158 # 1iicA.456.263 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 456 :LEQNFPIMP 1iicA 297 :NFIGEESLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=102159 # 1g8kA.456.635 read from T0547.t06.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)P461 (1g8kA)V641 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1g8kA)P644 because C (cis) conformation "forbidden" or filtered. T0547 456 :LEQNF 1g8kA 636 :SGNNG T0547 462 :IM 1g8kA 642 :QL Number of specific fragments extracted= 2 number of extra gaps= 2 total=102161 # 1qwyA.456.106 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)E457 (1qwyA)G133 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q458 (1qwyA)Y134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1qwyA)N137 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1qwyA)G139 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1qwyA)P140 because C (cis) conformation "forbidden" or filtered. T0547 456 :L 1qwyA 132 :Y T0547 459 :NF 1qwyA 135 :QS T0547 462 :I 1qwyA 138 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=102164 # 1u8xX.456.328 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)N459 (1u8xX)S309 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1u8xX)N312 Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1u8xX)N312 Warning: unaligning (T0547)M463 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1u8xX)S313 T0547 456 :LEQ 1u8xX 306 :REQ T0547 460 :F 1u8xX 310 :S T0547 464 :P 1u8xX 314 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=102167 # 1on3A.456.482 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)E457 (1on3A)G485 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1on3A)D489 because Y (epsilon') conformation "forbidden" or filtered. T0547 456 :L 1on3A 484 :R T0547 458 :QNF 1on3A 486 :QVD T0547 462 :IMP 1on3A 490 :VID Number of specific fragments extracted= 3 number of extra gaps= 2 total=102170 # 1sg4A.456.177 read from T0547.t06.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)E457 (1sg4A)G179 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :L 1sg4A 178 :V T0547 458 :QNF 1sg4A 180 :IVD T0547 462 :IMP 1sg4A 184 :VVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=102173 # 2b4vA.456.329 read from T0547.t06.many.frag # found chain 2b4vA in training set T0547 456 :LEQNFPIMP 2b4vA 349 :LPRYPDFSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=102174 # 2a6zA.456.138 read from T0547.t06.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)N459 (2a6zA)S147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (2a6zA)A149 because Y (epsilon') conformation "forbidden" or filtered. T0547 456 :LEQ 2a6zA 144 :YDQ T0547 460 :F 2a6zA 148 :F T0547 462 :IMP 2a6zA 150 :SCL Number of specific fragments extracted= 3 number of extra gaps= 2 total=102177 # 2bjiA.456.261 read from T0547.t06.many.frag # found chain 2bjiA in training set T0547 456 :LEQNFPIMP 2bjiA 1262 :IAKEIQIIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=102178 # 1t82A.456.108 read from T0547.t06.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)Q458 (1t82A)V101 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1t82A)T106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. T0547 456 :LE 1t82A 99 :VK T0547 459 :NFPI 1t82A 102 :RWPD Number of specific fragments extracted= 2 number of extra gaps= 2 total=102180 # 1pgl2.456.276 read from T0547.t06.many.frag # found chain 1pgl2 in template set T0547 456 :LEQNFPIMP 1pgl2 277 :NFEAFPHKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102181 # 1pl3A.456.95 read from T0547.t06.many.frag # found chain 1pl3A in template set Warning: unaligning (T0547)P461 (1pl3A)T101 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNF 1pl3A 96 :YTGTA T0547 462 :IMP 1pl3A 102 :LTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=102183 # 1ursA.456.262 read from T0547.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)E457 (1ursA)K264 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1ursA)G268 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :L 1ursA 263 :A T0547 458 :QNF 1ursA 265 :IDF T0547 462 :IMP 1ursA 269 :VTP Number of specific fragments extracted= 3 number of extra gaps= 2 total=102186 # 1nlnA.456.145 read from T0547.t06.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNF 1nlnA 146 :TMNLI T0547 462 :IMP 1nlnA 152 :GVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102188 # 1t3tA.456.156 read from T0547.t06.many.frag # found chain 1t3tA in template set T0547 456 :LEQNFPIMP 1t3tA 149 :LFIHHQPAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=102189 # 1wuiL.456.336 read from T0547.t06.many.frag # found chain 1wuiL in training set Warning: unaligning (T0547)P461 (1wuiL)K360 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1wuiL)D363 because S (epsilon) conformation "forbidden" or filtered. T0547 456 :LEQNF 1wuiL 355 :GQTQP T0547 462 :IM 1wuiL 361 :YT Number of specific fragments extracted= 2 number of extra gaps= 2 total=102191 # 1gy7A.456.52 read from T0547.t06.many.frag # found chain 1gy7A in training set Warning: unaligning (T0547)P464 (1gy7A)K61 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNFPIM 1gy7A 53 :KLVSLPFQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=102192 # 1fo8A.456.258 read from T0547.t06.many.frag # found chain 1fo8A in training set T0547 456 :LEQNFPIMP 1fo8A 363 :RVYGAPQLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=102193 # 1m15A.456.252 read from T0547.t06.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)P464 (1m15A)H261 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNFPIM 1m15A 253 :IESKLPFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=102194 # 1zbxB.456.48 read from T0547.t06.many.frag # found chain 1zbxB in template set Warning: unaligning (T0547)M463 (1zbxB)V535 because P (beta_P) conformation "forbidden" or filtered. T0547 456 :LEQNFPI 1zbxB 528 :MIDQMNL T0547 464 :P 1zbxB 536 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=102196 # 1va6A.456.381 read from T0547.t06.many.frag # found chain 1va6A in template set Warning: unaligning (T0547)P464 (1va6A)T390 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNFPIM 1va6A 382 :LEGRKPGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=102197 # 1i4wA.456.233 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)M463 (1i4wA)F229 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1i4wA)S230 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNFPI 1i4wA 222 :EEWDPIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=102198 1x84A expands to /projects/compbio/data/pdb/1x84.pdb.gz 1x84A:# 1x84A.456.85 read from T0547.t06.many.frag # adding 1x84A to template set # found chain 1x84A in template set T0547 456 :LEQNFPIMP 1x84A 86 :YELGVEITP Number of specific fragments extracted= 1 number of extra gaps= 0 total=102199 # 1zn6A.456.200 read from T0547.t06.many.frag # found chain 1zn6A in training set Warning: unaligning (T0547)P461 (1zn6A)L206 because E (beta_S) conformation "forbidden" or filtered. T0547 456 :LEQNF 1zn6A 201 :TRDFL T0547 462 :IMP 1zn6A 207 :PYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102201 # 1t6eX.457.188 read from T0547.t06.many.frag # found chain 1t6eX in training set T0547 457 :EQNFPIMPL 1t6eX 189 :TQSMPYTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102202 # 1hx0A.457.280 read from T0547.t06.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)E457 (1hx0A)G281 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 458 :QNF 1hx0A 282 :EGW T0547 462 :IMPL 1hx0A 286 :FMPS Number of specific fragments extracted= 2 number of extra gaps= 2 total=102204 # 1no7A.457.388 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P461 (1no7A)V843 because D (zeta) conformation "forbidden" or filtered. T0547 457 :EQNF 1no7A 839 :LQNM T0547 462 :IMPL 1no7A 844 :VPEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=102206 # 1qwyA.457.107 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)N459 (1qwyA)Q135 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1qwyA)N137 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1qwyA)P140 because C (cis) conformation "forbidden" or filtered. T0547 457 :EQ 1qwyA 133 :GY T0547 460 :F 1qwyA 136 :S T0547 462 :IM 1qwyA 138 :VG T0547 465 :L 1qwyA 141 :D Number of specific fragments extracted= 4 number of extra gaps= 3 total=102210 # 1t82A.457.109 read from T0547.t06.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)M463 (1t82A)T106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. T0547 457 :EQNFPI 1t82A 100 :KVRWPD T0547 465 :L 1t82A 108 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=102212 # 1v0aA.457.56 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)N459 (1v0aA)S59 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1v0aA)G63 because G (3-10) conformation "forbidden" or filtered. T0547 457 :EQ 1v0aA 57 :VY T0547 460 :FPI 1v0aA 60 :LPD T0547 464 :PL 1v0aA 64 :DW Number of specific fragments extracted= 3 number of extra gaps= 2 total=102215 # 1q52A.457.227 read from T0547.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)E457 (1q52A)G228 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1q52A)A232 because Y (epsilon') conformation "forbidden" or filtered. T0547 458 :QNF 1q52A 229 :AVN T0547 462 :IMPL 1q52A 233 :VAEH Number of specific fragments extracted= 2 number of extra gaps= 2 total=102217 # 1g8kA.457.636 read from T0547.t06.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)E457 (1g8kA)G637 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1g8kA)V641 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNF 1g8kA 638 :NNG T0547 462 :IMPL 1g8kA 642 :QLPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=102219 # 1tr9A.457.283 read from T0547.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)P464 (1tr9A)E290 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L465 (1tr9A)V291 because D (zeta) conformation "forbidden" or filtered. T0547 457 :EQNFPIM 1tr9A 283 :LDNLPIM Number of specific fragments extracted= 1 number of extra gaps= 1 total=102220 # 2b4vA.457.330 read from T0547.t06.many.frag # found chain 2b4vA in training set T0547 457 :EQNFPIMPL 2b4vA 350 :PRYPDFSPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102221 # 1nlnA.457.146 read from T0547.t06.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNF 1nlnA 147 :MNLI T0547 462 :IMPL 1nlnA 152 :GVPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=102223 # 1iicA.457.264 read from T0547.t06.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)I462 (1iicA)S303 because L (left) conformation "forbidden" or filtered. T0547 457 :EQNFP 1iicA 298 :FIGEE T0547 463 :MPL 1iicA 304 :LPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=102225 # 1on3A.457.483 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)E457 (1on3A)G485 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1on3A)D489 because Y (epsilon') conformation "forbidden" or filtered. T0547 458 :QNF 1on3A 486 :QVD T0547 462 :IMPL 1on3A 490 :VIDP Number of specific fragments extracted= 2 number of extra gaps= 2 total=102227 # 1i4wA.457.234 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)N459 (1i4wA)D225 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1i4wA)F229 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1i4wA)S230 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQ 1i4wA 223 :EW T0547 460 :FPI 1i4wA 226 :PIL T0547 465 :L 1i4wA 231 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=102230 # 1oz2A.457.233 read from T0547.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)N459 (1oz2A)G432 because T (delta_L) conformation "forbidden" or filtered. T0547 457 :EQ 1oz2A 430 :ET T0547 460 :FPIMPL 1oz2A 433 :ASAVPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=102232 # 1pl3A.457.96 read from T0547.t06.many.frag # found chain 1pl3A in template set Warning: unaligning (T0547)P461 (1pl3A)T101 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNF 1pl3A 97 :TGTA T0547 462 :IMPL 1pl3A 102 :LTTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=102234 # 1pgl2.457.277 read from T0547.t06.many.frag # found chain 1pgl2 in template set T0547 457 :EQNFPIMPL 1pgl2 278 :FEAFPHKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=102235 # 1sg4A.457.178 read from T0547.t06.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)E457 (1sg4A)G179 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNF 1sg4A 180 :IVD T0547 462 :IMPL 1sg4A 184 :VVPE Number of specific fragments extracted= 2 number of extra gaps= 2 total=102237 # 1u8xX.457.329 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)P461 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1u8xX)N312 Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1u8xX)N312 Warning: unaligning (T0547)M463 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1u8xX)S313 T0547 457 :EQNF 1u8xX 307 :EQSS T0547 464 :PL 1u8xX 314 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=102239 # 1ursA.457.263 read from T0547.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)E457 (1ursA)K264 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1ursA)G268 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNF 1ursA 265 :IDF T0547 462 :IMPL 1ursA 269 :VTPW Number of specific fragments extracted= 2 number of extra gaps= 2 total=102241 # 1wuiL.457.337 read from T0547.t06.many.frag # found chain 1wuiL in training set Warning: unaligning (T0547)P461 (1wuiL)K360 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1wuiL)D363 because S (epsilon) conformation "forbidden" or filtered. T0547 457 :EQNF 1wuiL 356 :QTQP T0547 462 :IM 1wuiL 361 :YT T0547 465 :L 1wuiL 364 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=102244 # 1va6A.457.382 read from T0547.t06.many.frag # found chain 1va6A in template set Warning: unaligning (T0547)I462 (1va6A)G388 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1va6A)T390 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNFP 1va6A 383 :EGRKP T0547 463 :M 1va6A 389 :L T0547 465 :L 1va6A 391 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=102247 # 2czrA.457.201 read from T0547.t06.many.frag # found chain 2czrA in template set T0547 457 :EQNFPIMPL 2czrA 194 :DKFGGEVPM Number of specific fragments extracted= 1 number of extra gaps= 0 total=102248 # 2bjiA.457.262 read from T0547.t06.many.frag # found chain 2bjiA in training set T0547 457 :EQNFPIMPL 2bjiA 1263 :AKEIQIIPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102249 # 2a6zA.457.139 read from T0547.t06.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)P461 (2a6zA)A149 because Y (epsilon') conformation "forbidden" or filtered. T0547 457 :EQNF 2a6zA 145 :DQSF T0547 462 :IMPL 2a6zA 150 :SCLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=102251 # 1gy7A.457.53 read from T0547.t06.many.frag # found chain 1gy7A in training set Warning: unaligning (T0547)P464 (1gy7A)K61 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNFPIM 1gy7A 54 :LVSLPFQ T0547 465 :L 1gy7A 62 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=102253 # 1m15A.457.253 read from T0547.t06.many.frag # found chain 1m15A in training set Warning: unaligning (T0547)M463 (1m15A)S260 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1m15A)H261 because E (beta_S) conformation "forbidden" or filtered. T0547 457 :EQNFPI 1m15A 254 :ESKLPF T0547 465 :L 1m15A 262 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=102255 # 1pi1A.457.158 read from T0547.t06.many.frag # found chain 1pi1A in template set Warning: unaligning (T0547)P461 (1pi1A)N173 because L (left) conformation "forbidden" or filtered. T0547 457 :EQNF 1pi1A 169 :VQEF T0547 462 :IMPL 1pi1A 174 :LIDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=102257 # 1zbxB.457.49 read from T0547.t06.many.frag # found chain 1zbxB in template set T0547 457 :EQNFPIMPL 1zbxB 529 :IDQMNLVKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=102258 # 1x84A.457.86 read from T0547.t06.many.frag # found chain 1x84A in template set Warning: unaligning (T0547)M463 (1x84A)T93 because P (beta_P) conformation "forbidden" or filtered. T0547 457 :EQNFPI 1x84A 87 :ELGVEI T0547 464 :PL 1x84A 94 :PP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102260 # 1t6eX.458.189 read from T0547.t06.many.frag # found chain 1t6eX in training set T0547 458 :QNFPIMPLD 1t6eX 190 :QSMPYTPLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=102261 # 1hx0A.458.281 read from T0547.t06.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 458 :QNF 1hx0A 282 :EGW T0547 462 :IMPLD 1hx0A 286 :FMPSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=102263 # 1nlnA.458.147 read from T0547.t06.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNF 1nlnA 148 :NLI T0547 462 :IMPLD 1nlnA 152 :GVPNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=102265 # 1qwyA.458.108 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)P461 (1qwyA)N137 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1qwyA)G139 because Y (epsilon') conformation "forbidden" or filtered. T0547 458 :QNF 1qwyA 134 :YQS T0547 462 :I 1qwyA 138 :V T0547 464 :PLD 1qwyA 140 :PDA Number of specific fragments extracted= 3 number of extra gaps= 2 total=102268 # 1t82A.458.110 read from T0547.t06.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)M463 (1t82A)T106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. T0547 458 :QNFPI 1t82A 101 :VRWPD T0547 465 :LD 1t82A 108 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=102270 # 1no7A.458.389 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)N459 (1no7A)N841 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1no7A)V843 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D466 (1no7A)A848 because P (beta_P) conformation "forbidden" or filtered. T0547 458 :Q 1no7A 840 :Q T0547 460 :F 1no7A 842 :M T0547 462 :IMPL 1no7A 844 :VPEI Number of specific fragments extracted= 3 number of extra gaps= 3 total=102273 # 1v0aA.458.57 read from T0547.t06.many.frag # found chain 1v0aA in template set Warning: unaligning (T0547)Q458 (1v0aA)Y58 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NFPIMPLD 1v0aA 59 :SLPDGDWS Number of specific fragments extracted= 1 number of extra gaps= 1 total=102274 # 1iicA.458.265 read from T0547.t06.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)I462 (1iicA)S303 because L (left) conformation "forbidden" or filtered. T0547 458 :QNFP 1iicA 299 :IGEE T0547 463 :MPLD 1iicA 304 :LPLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=102276 # 1q52A.458.228 read from T0547.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)P461 (1q52A)A232 because Y (epsilon') conformation "forbidden" or filtered. T0547 458 :QNF 1q52A 229 :AVN T0547 462 :IMPLD 1q52A 233 :VAEHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=102278 # 1i4wA.458.235 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)N459 (1i4wA)D225 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1i4wA)S230 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :Q 1i4wA 224 :W T0547 460 :FPIM 1i4wA 226 :PILF T0547 465 :LD 1i4wA 231 :AA Number of specific fragments extracted= 3 number of extra gaps= 2 total=102281 # 2b4vA.458.331 read from T0547.t06.many.frag # found chain 2b4vA in training set T0547 458 :QNFPIMPLD 2b4vA 351 :RYPDFSPLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=102282 # 1oz2A.458.234 read from T0547.t06.many.frag # found chain 1oz2A in training set T0547 458 :QNFPIMPLD 1oz2A 431 :TGASAVPTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=102283 # 1tr9A.458.284 read from T0547.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)N459 (1tr9A)N285 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1tr9A)E290 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :Q 1tr9A 284 :D T0547 460 :FPIM 1tr9A 286 :LPIM T0547 465 :LD 1tr9A 291 :VP Number of specific fragments extracted= 3 number of extra gaps= 2 total=102286 # 1ursA.458.264 read from T0547.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)P461 (1ursA)G268 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D466 (1ursA)P273 because P (beta_P) conformation "forbidden" or filtered. T0547 458 :QNF 1ursA 265 :IDF T0547 462 :IMPL 1ursA 269 :VTPW Number of specific fragments extracted= 2 number of extra gaps= 2 total=102288 # 1on3A.458.484 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)P461 (1on3A)D489 because Y (epsilon') conformation "forbidden" or filtered. T0547 458 :QNF 1on3A 486 :QVD T0547 462 :IMPLD 1on3A 490 :VIDPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=102290 # 1ryoA.458.227 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)F460 (1ryoA)N230 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1ryoA)T231 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QN 1ryoA 228 :LD T0547 462 :IMPLD 1ryoA 232 :RKPVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=102292 # 1sg4A.458.179 read from T0547.t06.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNF 1sg4A 180 :IVD T0547 462 :IMPLD 1sg4A 184 :VVPEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=102294 # 1g8kA.458.637 read from T0547.t06.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)F460 (1g8kA)G640 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1g8kA)V641 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1g8kA)L643 because P (beta_P) conformation "forbidden" or filtered. T0547 458 :QN 1g8kA 638 :NN T0547 462 :I 1g8kA 642 :Q T0547 464 :PLD 1g8kA 644 :PVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=102297 # 1pl3A.458.97 read from T0547.t06.many.frag # found chain 1pl3A in template set Warning: unaligning (T0547)P461 (1pl3A)T101 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNF 1pl3A 98 :GTA T0547 462 :IMPLD 1pl3A 102 :LTTLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102299 # 2czrA.458.202 read from T0547.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)F460 (2czrA)G197 because T (delta_L) conformation "forbidden" or filtered. T0547 458 :QN 2czrA 195 :KF T0547 461 :PIMPLD 2czrA 198 :GEVPMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=102301 # 2cy7A.458.305 read from T0547.t06.many.frag # found chain 2cy7A in template set T0547 458 :QNFPIMPLD 2cy7A 303 :HPPCRMSIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=102302 # 1wuiL.458.338 read from T0547.t06.many.frag # found chain 1wuiL in training set Warning: unaligning (T0547)P461 (1wuiL)K360 because D (zeta) conformation "forbidden" or filtered. T0547 458 :QNF 1wuiL 357 :TQP T0547 462 :IMPLD 1wuiL 361 :YTDLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=102304 # 1br9.458.99 read from T0547.t06.many.frag # found chain 1br9 in template set T0547 458 :QNFPIMPLD 1br9 100 :LCDFIVPWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=102305 # 1iq4A.458.135 read from T0547.t06.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)P464 (1iq4A)D142 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNFPIM 1iq4A 136 :LIFPEI T0547 465 :LD 1iq4A 143 :YD Number of specific fragments extracted= 2 number of extra gaps= 1 total=102307 # 1pi1A.458.159 read from T0547.t06.many.frag # found chain 1pi1A in template set Warning: unaligning (T0547)P461 (1pi1A)N173 because L (left) conformation "forbidden" or filtered. T0547 458 :QNF 1pi1A 170 :QEF T0547 462 :IMPLD 1pi1A 174 :LIDRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=102309 # 1r6wA.458.307 read from T0547.t06.many.frag # found chain 1r6wA in training set T0547 458 :QNFPIMPLD 1r6wA 306 :STLPVVEVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=102310 # 1va6A.458.383 read from T0547.t06.many.frag # found chain 1va6A in template set Warning: unaligning (T0547)I462 (1va6A)G388 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1va6A)T390 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNFP 1va6A 384 :GRKP T0547 463 :M 1va6A 389 :L T0547 465 :LD 1va6A 391 :LG Number of specific fragments extracted= 3 number of extra gaps= 2 total=102313 # 2bswA.458.18 read from T0547.t06.many.frag # found chain 2bswA in template set T0547 458 :QNFPIMPLD 2bswA 19 :ILRPNQPIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=102314 # 1zbxB.458.50 read from T0547.t06.many.frag # found chain 1zbxB in template set T0547 458 :QNFPIMPLD 1zbxB 530 :DQMNLVKWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=102315 # 1pgl2.458.278 read from T0547.t06.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0547)D466 (1pgl2)Q287 because E (beta_S) conformation "forbidden" or filtered. T0547 458 :QNFPIMPL 1pgl2 279 :EAFPHKLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=102316 # 1t6eX.459.190 read from T0547.t06.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)R467 (1t6eX)T199 because P (beta_P) conformation "forbidden" or filtered. T0547 459 :NFPIMPLD 1t6eX 191 :SMPYTPLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=102317 # 1hx0A.459.282 read from T0547.t06.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 459 :NF 1hx0A 283 :GW T0547 462 :IMPLDR 1hx0A 286 :FMPSDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=102319 # 1nlnA.459.148 read from T0547.t06.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NF 1nlnA 149 :LI T0547 462 :IMPLDR 1nlnA 152 :GVPNSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=102321 # 1t82A.459.111 read from T0547.t06.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)N459 (1t82A)R102 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1t82A)T106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. T0547 460 :FPI 1t82A 103 :WPD T0547 465 :LDR 1t82A 108 :LSP Number of specific fragments extracted= 2 number of extra gaps= 2 total=102323 # 1qwyA.459.109 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)P461 (1qwyA)N137 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1qwyA)G139 because Y (epsilon') conformation "forbidden" or filtered. T0547 459 :NF 1qwyA 135 :QS T0547 462 :I 1qwyA 138 :V T0547 464 :PLDR 1qwyA 140 :PDAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=102326 # 1ryoA.459.228 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P461 (1ryoA)T231 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NF 1ryoA 229 :DN T0547 462 :IMPLDR 1ryoA 232 :RKPVDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=102328 # 1sg4A.459.180 read from T0547.t06.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NF 1sg4A 181 :VD T0547 462 :IMPLDR 1sg4A 184 :VVPEEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=102330 # 1i4wA.459.236 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)P464 (1i4wA)S230 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NFPIM 1i4wA 225 :DPILF T0547 465 :LDR 1i4wA 231 :AAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=102332 # 1no7A.459.390 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P461 (1no7A)V843 because D (zeta) conformation "forbidden" or filtered. T0547 459 :NF 1no7A 841 :NM T0547 462 :IMPLDR 1no7A 844 :VPEIAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102334 # 1iicA.459.266 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 459 :NFPIMPLDR 1iicA 300 :GEESLPLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=102335 # 1oz2A.459.235 read from T0547.t06.many.frag # found chain 1oz2A in training set T0547 459 :NFPIMPLDR 1oz2A 432 :GASAVPTWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=102336 # 1q52A.459.229 read from T0547.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)P461 (1q52A)A232 because Y (epsilon') conformation "forbidden" or filtered. T0547 459 :NF 1q52A 230 :VN T0547 462 :IMPLDR 1q52A 233 :VAEHAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=102338 # 1ursA.459.265 read from T0547.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)P461 (1ursA)G268 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1ursA)T274 because P (beta_P) conformation "forbidden" or filtered. T0547 459 :NF 1ursA 266 :DF T0547 462 :IMPLD 1ursA 269 :VTPWP Number of specific fragments extracted= 2 number of extra gaps= 2 total=102340 # 1r6wA.459.308 read from T0547.t06.many.frag # found chain 1r6wA in training set T0547 459 :NFPIMPLDR 1r6wA 307 :TLPVVEVDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=102341 # 2b4vA.459.332 read from T0547.t06.many.frag # found chain 2b4vA in training set T0547 459 :NFPIMPLDR 2b4vA 352 :YPDFSPLYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=102342 # 1iq4A.459.136 read from T0547.t06.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)P464 (1iq4A)D142 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NFPIM 1iq4A 137 :IFPEI T0547 465 :LDR 1iq4A 143 :YDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=102344 # 1br9.459.100 read from T0547.t06.many.frag # found chain 1br9 in template set T0547 459 :NFPIMPLDR 1br9 101 :CDFIVPWDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=102345 # 2czrA.459.203 read from T0547.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)F460 (2czrA)G197 because T (delta_L) conformation "forbidden" or filtered. T0547 459 :N 2czrA 196 :F T0547 461 :PIMPLDR 2czrA 198 :GEVPMDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=102347 2d00A expands to /projects/compbio/data/pdb/2d00.pdb.gz 2d00A:# 2d00A.459.75 read from T0547.t06.many.frag # adding 2d00A to template set # found chain 2d00A in template set Warning: unaligning (T0547)P464 (2d00A)G81 because L (left) conformation "forbidden" or filtered. T0547 459 :NFPIM 2d00A 76 :LLPIA T0547 465 :LDR 2d00A 82 :LKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=102349 # 1on3A.459.485 read from T0547.t06.many.frag # found chain 1on3A in template set Warning: unaligning (T0547)P461 (1on3A)D489 because Y (epsilon') conformation "forbidden" or filtered. T0547 459 :NF 1on3A 487 :VD T0547 462 :IMPLDR 1on3A 490 :VIDPAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=102351 # 1tr9A.459.285 read from T0547.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0547)P464 (1tr9A)E290 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NFPIM 1tr9A 285 :NLPIM T0547 465 :LDR 1tr9A 291 :VPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=102353 # 1pl3A.459.98 read from T0547.t06.many.frag # found chain 1pl3A in template set Warning: unaligning (T0547)P461 (1pl3A)T101 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NF 1pl3A 99 :TA T0547 462 :IMPLDR 1pl3A 102 :LTTLPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=102355 # 2cy7A.459.306 read from T0547.t06.many.frag # found chain 2cy7A in template set T0547 459 :NFPIMPLDR 2cy7A 304 :PPCRMSIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=102356 # 4bcl.459.238 read from T0547.t06.many.frag # found chain 4bcl in template set T0547 459 :NFPIMPLDR 4bcl 239 :WTELFPVEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=102357 # 1zbxB.459.51 read from T0547.t06.many.frag # found chain 1zbxB in template set T0547 459 :NFPIMPLDR 1zbxB 531 :QMNLVKWND Number of specific fragments extracted= 1 number of extra gaps= 0 total=102358 # 1g8kA.459.638 read from T0547.t06.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)F460 (1g8kA)G640 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1g8kA)V641 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1g8kA)S647 because Y (epsilon') conformation "forbidden" or filtered. T0547 459 :N 1g8kA 639 :N T0547 462 :IMPLD 1g8kA 642 :QLPVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=102360 # 1m65A.459.232 read from T0547.t06.many.frag # found chain 1m65A in training set Warning: unaligning (T0547)P461 (1m65A)G235 because T (delta_L) conformation "forbidden" or filtered. T0547 459 :NF 1m65A 233 :SR T0547 462 :IMPLDR 1m65A 236 :MAPIAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=102362 # 2bswA.459.19 read from T0547.t06.many.frag # found chain 2bswA in template set T0547 459 :NFPIMPLDR 2bswA 20 :LRPNQPIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=102363 # 1tjyA.459.276 read from T0547.t06.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)P461 (1tjyA)T303 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NF 1tjyA 301 :KV T0547 462 :IMPLDR 1tjyA 304 :VSPNSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=102365 # 2ae5B.459.219 read from T0547.t06.many.frag # found chain 2ae5B in template set Warning: unaligning (T0547)P461 (2ae5B)E222 because E (beta_S) conformation "forbidden" or filtered. T0547 459 :NF 2ae5B 220 :WT T0547 462 :IMPLDR 2ae5B 223 :THPLDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=102367 # 1nlnA.460.149 read from T0547.t06.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1nlnA 150 :I T0547 462 :IMPLDRL 1nlnA 152 :GVPNSML Number of specific fragments extracted= 2 number of extra gaps= 1 total=102369 # 1t6eX.460.191 read from T0547.t06.many.frag # found chain 1t6eX in training set T0547 460 :FPIMPLDRL 1t6eX 192 :MPYTPLVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=102370 # 1t82A.460.112 read from T0547.t06.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. T0547 460 :FPIM 1t82A 103 :WPDT T0547 465 :LDRL 1t82A 108 :LSPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=102372 # 1hx0A.460.283 read from T0547.t06.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. T0547 460 :F 1hx0A 284 :W T0547 462 :IMPLDRL 1hx0A 286 :FMPSDRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=102374 # 1ryoA.460.229 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)F460 (1ryoA)N230 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1ryoA)T231 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRL 1ryoA 232 :RKPVDEY Number of specific fragments extracted= 1 number of extra gaps= 1 total=102375 # 1qwyA.460.110 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)F460 (1qwyA)S136 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P461 (1qwyA)N137 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1qwyA)G139 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :I 1qwyA 138 :V T0547 464 :PLDRL 1qwyA 140 :PDASY Number of specific fragments extracted= 2 number of extra gaps= 2 total=102377 # 1sg4A.460.181 read from T0547.t06.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1sg4A 182 :D T0547 462 :IMPLDRL 1sg4A 184 :VVPEEQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=102379 # 1i4wA.460.237 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)M463 (1i4wA)F229 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1i4wA)S230 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :FPI 1i4wA 226 :PIL T0547 465 :LDRL 1i4wA 231 :AAEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=102381 # 1oz2A.460.236 read from T0547.t06.many.frag # found chain 1oz2A in training set T0547 460 :FPIMPLDRL 1oz2A 433 :ASAVPTWAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=102382 # 1quqB.460.8 read from T0547.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)M463 (1quqB)I12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1quqB)N13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1quqB)M16 because G (3-10) conformation "forbidden" or filtered. T0547 460 :FPI 1quqB 9 :RSR T0547 465 :LD 1quqB 14 :AG T0547 468 :L 1quqB 17 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=102385 # 1iq4A.460.137 read from T0547.t06.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)P464 (1iq4A)D142 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1iq4A)K145 because G (3-10) conformation "forbidden" or filtered. T0547 460 :FPIM 1iq4A 138 :FPEI T0547 465 :LD 1iq4A 143 :YD T0547 468 :L 1iq4A 146 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=102388 # 1q52A.460.230 read from T0547.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)P461 (1q52A)A232 because Y (epsilon') conformation "forbidden" or filtered. T0547 460 :F 1q52A 231 :N T0547 462 :IMPLDRL 1q52A 233 :VAEHAEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=102390 # 2d00A.460.76 read from T0547.t06.many.frag # found chain 2d00A in template set Warning: unaligning (T0547)P464 (2d00A)G81 because L (left) conformation "forbidden" or filtered. T0547 460 :FPIM 2d00A 77 :LPIA T0547 465 :LDRL 2d00A 82 :LKEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=102392 # 1tjyA.460.277 read from T0547.t06.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)P461 (1tjyA)T303 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1tjyA 302 :V T0547 462 :IMPLDRL 1tjyA 304 :VSPNSEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=102394 # 1iicA.460.267 read from T0547.t06.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)I462 (1iicA)S303 because L (left) conformation "forbidden" or filtered. T0547 460 :FP 1iicA 301 :EE T0547 463 :MPLDRL 1iicA 304 :LPLDKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=102396 # 1ursA.460.266 read from T0547.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)P461 (1ursA)G268 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1ursA)T274 because P (beta_P) conformation "forbidden" or filtered. T0547 460 :F 1ursA 267 :F T0547 462 :IMPLD 1ursA 269 :VTPWP T0547 468 :L 1ursA 275 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=102399 # 1no7A.460.391 read from T0547.t06.many.frag # found chain 1no7A in template set Warning: unaligning (T0547)P461 (1no7A)V843 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D466 (1no7A)A848 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L468 (1no7A)G850 because T (delta_L) conformation "forbidden" or filtered. T0547 460 :F 1no7A 842 :M T0547 462 :IMPL 1no7A 844 :VPEI T0547 467 :R 1no7A 849 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=102402 # 1pii.460.385 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)F460 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)G386 Warning: unaligning (T0547)P461 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)Q387 Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)R388 T0547 463 :MPLDRL 1pii 389 :FDWSLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=102403 # 1nxmA.460.46 read from T0547.t06.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)P461 (1nxmA)L48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I462 (1nxmA)G49 because T (delta_L) conformation "forbidden" or filtered. T0547 460 :F 1nxmA 47 :P T0547 463 :MPLDRL 1nxmA 50 :FPESFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=102405 # 1o26A.460.109 read from T0547.t06.many.frag # found chain 1o26A in training set T0547 460 :FPIMPLDRL 1o26A 98 :FYIPSPERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102406 # 2czrA.460.204 read from T0547.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)F460 (2czrA)G197 because T (delta_L) conformation "forbidden" or filtered. T0547 461 :PIMPLDRL 2czrA 198 :GEVPMDKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=102407 # 1br9.460.101 read from T0547.t06.many.frag # found chain 1br9 in template set T0547 460 :FPIMPLDRL 1br9 102 :DFIVPWDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102408 # 1r6wA.460.309 read from T0547.t06.many.frag # found chain 1r6wA in training set T0547 460 :FPIMPLDRL 1r6wA 308 :LPVVEVDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102409 # 2ae5B.460.220 read from T0547.t06.many.frag # found chain 2ae5B in template set Warning: unaligning (T0547)P461 (2ae5B)E222 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 2ae5B 221 :T T0547 462 :IMPLDRL 2ae5B 223 :THPLDDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=102411 # 1eybA.460.233 read from T0547.t06.many.frag # found chain 1eybA in template set Warning: unaligning (T0547)P461 (1eybA)E209 because E (beta_S) conformation "forbidden" or filtered. T0547 460 :F 1eybA 208 :F T0547 462 :IMPLDRL 1eybA 210 :LPDLGPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=102413 # 1wuiL.460.340 read from T0547.t06.many.frag # found chain 1wuiL in training set Warning: unaligning (T0547)P461 (1wuiL)K360 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1wuiL)D363 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D466 (1wuiL)H365 because T (delta_L) conformation "forbidden" or filtered. T0547 460 :F 1wuiL 359 :P T0547 462 :IM 1wuiL 361 :YT T0547 465 :L 1wuiL 364 :L T0547 467 :RL 1wuiL 366 :GD Number of specific fragments extracted= 4 number of extra gaps= 3 total=102417 # 1v8bA.460.300 read from T0547.t06.many.frag # found chain 1v8bA in template set Warning: unaligning (T0547)M463 (1v8bA)V304 because Y (epsilon') conformation "forbidden" or filtered. T0547 460 :FPI 1v8bA 301 :FNV T0547 464 :PLDRL 1v8bA 305 :TLDEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=102419 # 1t6eX.460.121 read from T0547.t06.many.frag # found chain 1t6eX in training set T0547 460 :FPIMPLDRL 1t6eX 122 :AACAPSKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102420 # 4bcl.460.239 read from T0547.t06.many.frag # found chain 4bcl in template set T0547 460 :FPIMPLDRL 4bcl 240 :TELFPVEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102421 # 1ze3C.460.89 read from T0547.t06.many.frag # found chain 1ze3C in template set T0547 460 :FPIMPLDRL 1ze3C 90 :IPSMDKSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102422 # 1nlnA.461.150 read from T0547.t06.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)P461 (1nlnA)T151 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1nlnA 152 :GVPNSMLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=102423 # 1t82A.461.113 read from T0547.t06.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)M463 (1t82A)T106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. T0547 461 :PI 1t82A 104 :PD T0547 465 :LDRLD 1t82A 108 :LSPLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=102425 # 1ryoA.461.230 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P461 (1ryoA)T231 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1ryoA)E237 because G (3-10) conformation "forbidden" or filtered. T0547 462 :IMPLD 1ryoA 232 :RKPVD T0547 468 :LD 1ryoA 238 :YK Number of specific fragments extracted= 2 number of extra gaps= 2 total=102427 # 1t6eX.461.192 read from T0547.t06.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)D469 (1t6eX)G201 because P (beta_P) conformation "forbidden" or filtered. T0547 461 :PIMPLDRL 1t6eX 193 :PYTPLVTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=102428 # 1qwyA.461.111 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)P461 (1qwyA)N137 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M463 (1qwyA)G139 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :I 1qwyA 138 :V T0547 464 :PLDRLD 1qwyA 140 :PDASYY Number of specific fragments extracted= 2 number of extra gaps= 2 total=102430 # 1hx0A.461.284 read from T0547.t06.many.frag # found chain 1hx0A in training set Warning: unaligning (T0547)P461 (1hx0A)G285 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1hx0A)R291 because G (3-10) conformation "forbidden" or filtered. T0547 462 :IMPLD 1hx0A 286 :FMPSD T0547 468 :LD 1hx0A 292 :AL Number of specific fragments extracted= 2 number of extra gaps= 2 total=102432 # 1quqB.461.9 read from T0547.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)M463 (1quqB)I12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1quqB)N13 because E (beta_S) conformation "forbidden" or filtered. T0547 461 :PI 1quqB 10 :SR T0547 465 :LDRLD 1quqB 14 :AGMLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=102434 # 1i4wA.461.238 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)M463 (1i4wA)F229 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1i4wA)S230 because E (beta_S) conformation "forbidden" or filtered. T0547 461 :PI 1i4wA 227 :IL T0547 465 :LDRLD 1i4wA 231 :AAEIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=102436 # 1sg4A.461.182 read from T0547.t06.many.frag # found chain 1sg4A in training set Warning: unaligning (T0547)P461 (1sg4A)Q183 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1sg4A 184 :VVPEEQVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=102437 # 1h2wA.461.261 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)P461 (1h2wA)W262 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1h2wA 263 :YCDLQQES Number of specific fragments extracted= 1 number of extra gaps= 1 total=102438 # 1iq4A.461.138 read from T0547.t06.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)P464 (1iq4A)D142 because E (beta_S) conformation "forbidden" or filtered. T0547 461 :PIM 1iq4A 139 :PEI T0547 465 :LDRLD 1iq4A 143 :YDKVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=102440 # 1o26A.461.110 read from T0547.t06.many.frag # found chain 1o26A in training set T0547 461 :PIMPLDRLD 1o26A 99 :YIPSPERLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=102441 # 1nxmA.461.47 read from T0547.t06.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)P461 (1nxmA)L48 because G (3-10) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1nxmA 49 :GFPESFFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=102442 # 2exrA.461.297 read from T0547.t06.many.frag # found chain 2exrA in training set Warning: unaligning (T0547)P461 (2exrA)H298 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 2exrA 299 :EFDPTRLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=102443 # 1oz2A.461.237 read from T0547.t06.many.frag # found chain 1oz2A in training set T0547 461 :PIMPLDRLD 1oz2A 434 :SAVPTWAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=102444 # 1pii.461.386 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)P461 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)Q387 Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)R388 T0547 463 :MPLDRLD 1pii 389 :FDWSLLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=102445 # 1gp0A.461.17 read from T0547.t06.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)P464 (1gp0A)D1528 because E (beta_S) conformation "forbidden" or filtered. T0547 461 :PIM 1gp0A 1525 :HLF T0547 465 :LDRLD 1gp0A 1529 :LSSLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=102447 # 1eybA.461.234 read from T0547.t06.many.frag # found chain 1eybA in template set Warning: unaligning (T0547)P461 (1eybA)E209 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D466 (1eybA)G214 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1eybA)G217 because S (epsilon) conformation "forbidden" or filtered. T0547 462 :IMPL 1eybA 210 :LPDL T0547 467 :RL 1eybA 215 :PI Number of specific fragments extracted= 2 number of extra gaps= 3 total=102449 # 1tjyA.461.278 read from T0547.t06.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)P461 (1tjyA)T303 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1tjyA 304 :VSPNSEQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=102450 # 1q52A.461.231 read from T0547.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0547)P461 (1q52A)A232 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1q52A 233 :VAEHAELE Number of specific fragments extracted= 1 number of extra gaps= 1 total=102451 # 1ursA.461.267 read from T0547.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)P461 (1ursA)G268 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1ursA 269 :VTPWPTLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=102452 # 2cu6A.461.84 read from T0547.t06.many.frag # found chain 2cu6A in template set Warning: unaligning (T0547)P464 (2cu6A)T88 because Y (epsilon') conformation "forbidden" or filtered. T0547 461 :PIM 2cu6A 85 :PPW T0547 465 :LDRLD 2cu6A 89 :LARLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=102454 # 1d5tA.461.320 read from T0547.t06.many.frag # found chain 1d5tA in training set Warning: unaligning (T0547)P461 (1d5tA)I319 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1d5tA 320 :IIPQNQVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=102455 # 1qyrA.461.157 read from T0547.t06.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)P461 (1qyrA)L174 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1qyrA 175 :EVPPSAFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=102456 # 2czrA.461.205 read from T0547.t06.many.frag # found chain 2czrA in template set T0547 461 :PIMPLDRLD 2czrA 198 :GEVPMDKFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=102457 # 1t6eX.461.122 read from T0547.t06.many.frag # found chain 1t6eX in training set T0547 461 :PIMPLDRLD 1t6eX 123 :ACAPSKLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=102458 # 1ze3C.461.90 read from T0547.t06.many.frag # found chain 1ze3C in template set Warning: unaligning (T0547)M463 (1ze3C)M93 because Y (epsilon') conformation "forbidden" or filtered. T0547 461 :PI 1ze3C 91 :PS T0547 464 :PLDRLD 1ze3C 94 :DKSKLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=102460 # 2cy7A.461.308 read from T0547.t06.many.frag # found chain 2cy7A in template set T0547 461 :PIMPLDRLD 2cy7A 306 :CRMSIAELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=102461 # 1iicA.461.268 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 461 :PIMPLDRLD 1iicA 302 :ESLPLDKQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=102462 # 2d00A.461.77 read from T0547.t06.many.frag # found chain 2d00A in template set Warning: unaligning (T0547)M463 (2d00A)A80 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (2d00A)G81 because L (left) conformation "forbidden" or filtered. T0547 461 :PI 2d00A 78 :PI T0547 465 :LDRLD 2d00A 82 :LKEAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=102464 # 1t82A.462.114 read from T0547.t06.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :IM 1t82A 105 :DT T0547 465 :LDRLDE 1t82A 108 :LSPLQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=102466 # 1ryoA.462.231 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 462 :IMPLDRLDE 1ryoA 232 :RKPVDEYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=102467 # 1nlnA.462.151 read from T0547.t06.many.frag # found chain 1nlnA in training set T0547 462 :IMPLDRLDE 1nlnA 152 :GVPNSMLNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=102468 # 1t6eX.462.193 read from T0547.t06.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)D466 (1t6eX)V198 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IMPL 1t6eX 194 :YTPL T0547 467 :RLDE 1t6eX 199 :TKGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=102470 # 1qwyA.462.112 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)M463 (1qwyA)G139 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qwyA)S183 T0547 462 :I 1qwyA 138 :V T0547 464 :PLDRLD 1qwyA 140 :PDASYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=102472 # 1h2wA.462.262 read from T0547.t06.many.frag # found chain 1h2wA in training set T0547 462 :IMPLDRLDE 1h2wA 263 :YCDLQQESN Number of specific fragments extracted= 1 number of extra gaps= 0 total=102473 # 1quqB.462.10 read from T0547.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)M463 (1quqB)I12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1quqB)N13 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :I 1quqB 11 :R T0547 465 :LDRLDE 1quqB 14 :AGMLAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=102475 # 2exrA.462.298 read from T0547.t06.many.frag # found chain 2exrA in training set Warning: unaligning (T0547)D469 (2exrA)P306 because P (beta_P) conformation "forbidden" or filtered. T0547 462 :IMPLDRL 2exrA 299 :EFDPTRL T0547 470 :E 2exrA 307 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=102477 # 1i4wA.462.239 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)M463 (1i4wA)F229 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1i4wA)S230 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :I 1i4wA 228 :L T0547 465 :LDRLDE 1i4wA 231 :AAEIWP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102479 # 1sg4A.462.183 read from T0547.t06.many.frag # found chain 1sg4A in training set T0547 462 :IMPLDRLDE 1sg4A 184 :VVPEEQVQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=102480 # 1eybA.462.235 read from T0547.t06.many.frag # found chain 1eybA in template set Warning: unaligning (T0547)D469 (1eybA)G217 because S (epsilon) conformation "forbidden" or filtered. T0547 462 :IMPLDRL 1eybA 210 :LPDLGPI T0547 470 :E 1eybA 218 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=102482 # 1nxmA.462.48 read from T0547.t06.many.frag # found chain 1nxmA in training set T0547 462 :IMPLDRLDE 1nxmA 49 :GFPESFFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=102483 # 1pii.462.387 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)I462 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1pii)R388 T0547 463 :MPLDRLDE 1pii 389 :FDWSLLNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=102484 # 1iq4A.462.139 read from T0547.t06.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)P464 (1iq4A)D142 because E (beta_S) conformation "forbidden" or filtered. T0547 462 :IM 1iq4A 140 :EI T0547 465 :LDRLDE 1iq4A 143 :YDKVNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=102486 # 1o26A.462.111 read from T0547.t06.many.frag # found chain 1o26A in training set T0547 462 :IMPLDRLDE 1o26A 100 :IPSPERLEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=102487 # 2bj0A.462.120 read from T0547.t06.many.frag # found chain 2bj0A in template set T0547 462 :IMPLDRLDE 2bj0A 121 :TCDLINVDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=102488 # 1ursA.462.268 read from T0547.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)D466 (1ursA)P273 because P (beta_P) conformation "forbidden" or filtered. T0547 462 :IMPL 1ursA 269 :VTPW T0547 467 :RLDE 1ursA 274 :TLPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=102490 # 1gp0A.462.18 read from T0547.t06.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)P464 (1gp0A)D1528 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1gp0A)S1533 because P (beta_P) conformation "forbidden" or filtered. T0547 462 :IM 1gp0A 1526 :LF T0547 465 :LDRL 1gp0A 1529 :LSSL T0547 470 :E 1gp0A 1534 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=102493 # 1ikoP.462.71 read from T0547.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0547)P464 (1ikoP)N103 because D (zeta) conformation "forbidden" or filtered. T0547 462 :IM 1ikoP 101 :LL T0547 465 :LDRLDE 1ikoP 104 :CARPDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=102495 # 1tjyA.462.279 read from T0547.t06.many.frag # found chain 1tjyA in training set Warning: unaligning (T0547)D469 (1tjyA)G311 because T (delta_L) conformation "forbidden" or filtered. T0547 462 :IMPLDRL 1tjyA 304 :VSPNSEQ T0547 470 :E 1tjyA 312 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=102497 # 1z70X.462.32 read from T0547.t06.many.frag # found chain 1z70X in training set T0547 462 :IMPLDRLDE 1z70X 1105 :DPQIKQDGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=102498 # 1xmxA.462.361 read from T0547.t06.many.frag # found chain 1xmxA in template set T0547 462 :IMPLDRLDE 1xmxA 360 :LIGPDELKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=102499 # 1va6A.462.387 read from T0547.t06.many.frag # found chain 1va6A in template set Warning: unaligning (T0547)I462 (1va6A)G388 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1va6A)T390 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L468 (1va6A)G394 because S (epsilon) conformation "forbidden" or filtered. T0547 463 :M 1va6A 389 :L T0547 465 :LDR 1va6A 391 :LGI T0547 469 :DE 1va6A 395 :CE Number of specific fragments extracted= 3 number of extra gaps= 3 total=102502 # 1f8vA.462.209 read from T0547.t06.many.frag # found chain 1f8vA in template set Warning: unaligning (T0547)P464 (1f8vA)G218 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1f8vA)R223 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :IM 1f8vA 216 :IN T0547 465 :LDRL 1f8vA 219 :LRGI T0547 470 :E 1f8vA 224 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=102505 # 1oz2A.462.238 read from T0547.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0547)M463 (1oz2A)V436 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 because of BadResidue code BAD_PEPTIDE in next template residue (1oz2A)R444 T0547 462 :I 1oz2A 435 :A T0547 464 :PLDRLD 1oz2A 437 :PTWAFK Number of specific fragments extracted= 2 number of extra gaps= 2 total=102507 # 1qyrA.462.158 read from T0547.t06.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)E470 (1qyrA)P183 because C (cis) conformation "forbidden" or filtered. T0547 462 :IMPLDRLD 1qyrA 175 :EVPPSAFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=102508 # 1uxy.462.155 read from T0547.t06.many.frag # found chain 1uxy in training set Warning: unaligning (T0547)M463 (1uxy)R159 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1uxy)D160 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L465 (1uxy)S161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1uxy)H165 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :I 1uxy 158 :Y T0547 466 :DRL 1uxy 162 :IFK T0547 470 :E 1uxy 166 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=102511 # 1kshB.462.49 read from T0547.t06.many.frag # found chain 1kshB in training set T0547 462 :IMPLDRLDE 1kshB 48 :RVPKKILKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=102512 # 2cy7A.462.309 read from T0547.t06.many.frag # found chain 2cy7A in template set T0547 462 :IMPLDRLDE 2cy7A 307 :RMSIAELDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=102513 # 1g8kA.462.641 read from T0547.t06.many.frag # found chain 1g8kA in training set Warning: unaligning (T0547)R467 (1g8kA)S647 because Y (epsilon') conformation "forbidden" or filtered. T0547 462 :IMPLD 1g8kA 642 :QLPVV T0547 468 :LDE 1g8kA 648 :WDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=102515 # 1t82A.463.115 read from T0547.t06.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)M463 (1t82A)T106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1t82A)G114 because L (left) conformation "forbidden" or filtered. T0547 465 :LDRLDE 1t82A 108 :LSPLQR Number of specific fragments extracted= 1 number of extra gaps= 2 total=102516 # 1ryoA.463.232 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 463 :MPLDRLDEE 1ryoA 233 :KPVDEYKDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=102517 # 1nlnA.463.152 read from T0547.t06.many.frag # found chain 1nlnA in training set T0547 463 :MPLDRLDEE 1nlnA 153 :VPNSMLNSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=102518 # 2exrA.463.299 read from T0547.t06.many.frag # found chain 2exrA in training set Warning: unaligning (T0547)D469 (2exrA)P306 because P (beta_P) conformation "forbidden" or filtered. T0547 463 :MPLDRL 2exrA 300 :FDPTRL T0547 470 :EE 2exrA 307 :QS Number of specific fragments extracted= 2 number of extra gaps= 1 total=102520 # 1t6eX.463.194 read from T0547.t06.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)D466 (1t6eX)V198 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1t6eX)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 463 :MPL 1t6eX 195 :TPL T0547 467 :RLD 1t6eX 199 :TKG T0547 471 :E 1t6eX 203 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=102523 # 1h2wA.463.263 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)E471 (1h2wA)G272 because S (epsilon) conformation "forbidden" or filtered. T0547 463 :MPLDRLDE 1h2wA 264 :CDLQQESN Number of specific fragments extracted= 1 number of extra gaps= 1 total=102524 # 1quqB.463.11 read from T0547.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)M463 (1quqB)I12 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1quqB)N13 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1quqB 14 :AGMLAQF Number of specific fragments extracted= 1 number of extra gaps= 1 total=102525 # 1qwyA.463.113 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)E470 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qwyA)S183 T0547 463 :MPLDRLD 1qwyA 139 :GPDASYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=102526 # 2bj0A.463.121 read from T0547.t06.many.frag # found chain 2bj0A in template set T0547 463 :MPLDRLDEE 2bj0A 122 :CDLINVDTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=102527 # 1ikoP.463.72 read from T0547.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0547)P464 (1ikoP)N103 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1ikoP)R106 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. T0547 463 :M 1ikoP 102 :L T0547 465 :LD 1ikoP 104 :CA T0547 468 :LD 1ikoP 107 :PD T0547 471 :E 1ikoP 110 :D Number of specific fragments extracted= 4 number of extra gaps= 3 total=102531 # 1nxmA.463.49 read from T0547.t06.many.frag # found chain 1nxmA in training set T0547 463 :MPLDRLDEE 1nxmA 50 :FPESFFAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=102532 # 1pii.463.388 read from T0547.t06.many.frag # found chain 1pii in template set T0547 463 :MPLDRLDEE 1pii 389 :FDWSLLNGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=102533 # 1i4wA.463.240 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)P464 (1i4wA)S230 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1i4wA)T237 because P (beta_P) conformation "forbidden" or filtered. T0547 463 :M 1i4wA 229 :F T0547 465 :LDRLDE 1i4wA 231 :AAEIWP Number of specific fragments extracted= 2 number of extra gaps= 2 total=102535 # 1eybA.463.236 read from T0547.t06.many.frag # found chain 1eybA in template set Warning: unaligning (T0547)D466 (1eybA)G214 because S (epsilon) conformation "forbidden" or filtered. T0547 463 :MPL 1eybA 211 :PDL T0547 467 :RLDEE 1eybA 215 :PIGAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=102537 # 1iq4A.463.140 read from T0547.t06.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)P464 (1iq4A)D142 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1iq4A)K148 because Y (epsilon') conformation "forbidden" or filtered. T0547 463 :M 1iq4A 141 :I T0547 465 :LDRLD 1iq4A 143 :YDKVN T0547 471 :E 1iq4A 149 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=102540 # 1f8vA.463.210 read from T0547.t06.many.frag # found chain 1f8vA in template set Warning: unaligning (T0547)P464 (1f8vA)G218 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1f8vA)R223 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1f8vA)L225 because N (gamma') conformation "forbidden" or filtered. T0547 463 :M 1f8vA 217 :N T0547 465 :LDRL 1f8vA 219 :LRGI T0547 470 :E 1f8vA 224 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=102543 # 1o26A.463.112 read from T0547.t06.many.frag # found chain 1o26A in training set T0547 463 :MPLDRLDEE 1o26A 101 :PSPERLEGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=102544 # 1ursA.463.269 read from T0547.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0547)R467 (1ursA)T274 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1ursA)G278 because T (delta_L) conformation "forbidden" or filtered. T0547 463 :MPLD 1ursA 270 :TPWP T0547 468 :LDE 1ursA 275 :LPN Number of specific fragments extracted= 2 number of extra gaps= 2 total=102546 # 1uxy.463.156 read from T0547.t06.many.frag # found chain 1uxy in training set Warning: unaligning (T0547)M463 (1uxy)R159 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1uxy)D160 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L465 (1uxy)S161 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRLDEE 1uxy 162 :IFKHEY Number of specific fragments extracted= 1 number of extra gaps= 1 total=102547 # 1xv5A.463.256 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)P464 (1xv5A)E1257 because G (3-10) conformation "forbidden" or filtered. T0547 463 :M 1xv5A 1256 :R T0547 465 :LDRLDEE 1xv5A 1258 :IDKMNLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=102549 # 1gp0A.463.19 read from T0547.t06.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)P464 (1gp0A)D1528 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1gp0A)G1534 because S (epsilon) conformation "forbidden" or filtered. T0547 463 :M 1gp0A 1527 :F T0547 465 :LDRLD 1gp0A 1529 :LSSLS T0547 471 :E 1gp0A 1535 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=102552 # 1bc5A.463.193 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)M463 (1bc5A)S209 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P464 (1bc5A)S210 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1bc5A 211 :VNLLEKQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=102553 # 1va6A.463.388 read from T0547.t06.many.frag # found chain 1va6A in template set Warning: unaligning (T0547)P464 (1va6A)T390 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L468 (1va6A)G394 because S (epsilon) conformation "forbidden" or filtered. T0547 463 :M 1va6A 389 :L T0547 465 :LDR 1va6A 391 :LGI T0547 469 :DEE 1va6A 395 :CET Number of specific fragments extracted= 3 number of extra gaps= 2 total=102556 # 1dzkA.463.23 read from T0547.t06.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)P464 (1dzkA)D25 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1dzkA)G30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1dzkA)N32 because L (left) conformation "forbidden" or filtered. T0547 463 :M 1dzkA 24 :S T0547 465 :LDRL 1dzkA 26 :LEKI T0547 470 :E 1dzkA 31 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=102559 # 1ng0A.463.183 read from T0547.t06.many.frag # found chain 1ng0A in template set T0547 463 :MPLDRLDEE 1ng0A 184 :LPCDEFSNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=102560 # 1z70X.463.33 read from T0547.t06.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)D469 (1z70X)G1112 because L (left) conformation "forbidden" or filtered. T0547 463 :MPLDRL 1z70X 1106 :PQIKQD T0547 470 :EE 1z70X 1113 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=102562 # 1t62A.463.92 read from T0547.t06.many.frag # found chain 1t62A in template set T0547 463 :MPLDRLDEE 1t62A 1093 :MPMNKVSES Number of specific fragments extracted= 1 number of extra gaps= 0 total=102563 # 1qyrA.463.159 read from T0547.t06.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)D469 (1qyrA)T182 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1qyrA)P183 because C (cis) conformation "forbidden" or filtered. T0547 463 :MPLDRL 1qyrA 176 :VPPSAF T0547 471 :E 1qyrA 184 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=102565 # 1suuA.463.191 read from T0547.t06.many.frag # found chain 1suuA in training set T0547 463 :MPLDRLDEE 1suuA 690 :VCGMKLKEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=102566 2c4xA expands to /projects/compbio/data/pdb/2c4x.pdb.gz 2c4xA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2c4xA.463.201 read from T0547.t06.many.frag # adding 2c4xA to template set # found chain 2c4xA in template set Warning: unaligning (T0547)E471 (2c4xA)D207 because L (left) conformation "forbidden" or filtered. T0547 463 :MPLDRLDE 2c4xA 199 :KGYTMVKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=102567 # 1t82A.464.116 read from T0547.t06.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)P464 (1t82A)N107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1t82A)G114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDE 1t82A 108 :LSPLQR Number of specific fragments extracted= 1 number of extra gaps= 2 total=102568 # 1ryoA.464.233 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRLDEE 1ryoA 234 :PVDEYKDC Number of specific fragments extracted= 1 number of extra gaps= 1 total=102569 # 2exrA.464.300 read from T0547.t06.many.frag # found chain 2exrA in training set T0547 464 :PLDRLDEEP 2exrA 301 :DPTRLPQSC Number of specific fragments extracted= 1 number of extra gaps= 0 total=102570 # 1h2wA.464.264 read from T0547.t06.many.frag # found chain 1h2wA in training set T0547 464 :PLDRLDEEP 1h2wA 265 :DLQQESNGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=102571 # 1quqB.464.12 read from T0547.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)P464 (1quqB)N13 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 1quqB 14 :AGMLAQFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=102572 # 1nlnA.464.153 read from T0547.t06.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)E470 (1nlnA)S160 because P (beta_P) conformation "forbidden" or filtered. T0547 464 :PLDRLD 1nlnA 154 :PNSMLN T0547 471 :EP 1nlnA 161 :PQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=102574 # 2bj0A.464.122 read from T0547.t06.many.frag # found chain 2bj0A in template set T0547 464 :PLDRLDEEP 2bj0A 123 :DLINVDTEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=102575 # 1xv5A.464.257 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)P464 (1xv5A)E1257 because G (3-10) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 1xv5A 1258 :IDKMNLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=102576 # 1bc5A.464.194 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)P464 (1bc5A)S210 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 1bc5A 211 :VNLLEKQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=102577 # 1pii.464.389 read from T0547.t06.many.frag # found chain 1pii in template set Warning: unaligning (T0547)D469 (1pii)N395 because P (beta_P) conformation "forbidden" or filtered. T0547 464 :PLDRL 1pii 390 :DWSLL T0547 470 :EEP 1pii 396 :GQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=102579 # 1t6eX.464.195 read from T0547.t06.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)D466 (1t6eX)V198 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1t6eX)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 464 :PL 1t6eX 196 :PL T0547 467 :RLD 1t6eX 199 :TKG T0547 471 :EP 1t6eX 203 :SP Number of specific fragments extracted= 3 number of extra gaps= 2 total=102582 # 1i4wA.464.241 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)P464 (1i4wA)S230 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1i4wA)K238 because L (left) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1i4wA 231 :AAEIWPT Number of specific fragments extracted= 1 number of extra gaps= 2 total=102583 # 1ikoP.464.73 read from T0547.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0547)P464 (1ikoP)N103 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)R467 (1ikoP)R106 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ikoP)V111 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LD 1ikoP 104 :CA T0547 468 :LDEE 1ikoP 107 :PDQD Number of specific fragments extracted= 2 number of extra gaps= 3 total=102585 # 1qwyA.464.114 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)E470 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qwyA)S183 T0547 464 :PLDRLD 1qwyA 140 :PDASYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=102586 # 1nxmA.464.50 read from T0547.t06.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)E471 (1nxmA)G58 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1nxmA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRLDE 1nxmA 51 :PESFFAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=102587 # 1f8vA.464.211 read from T0547.t06.many.frag # found chain 1f8vA in template set Warning: unaligning (T0547)P464 (1f8vA)G218 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1f8vA)R223 because Y (epsilon') conformation "forbidden" or filtered. T0547 465 :LDRL 1f8vA 219 :LRGI T0547 470 :EEP 1f8vA 224 :PLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=102589 # 1uxy.464.157 read from T0547.t06.many.frag # found chain 1uxy in training set Warning: unaligning (T0547)P464 (1uxy)D160 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L465 (1uxy)S161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1uxy)H165 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRL 1uxy 162 :IFK T0547 470 :EEP 1uxy 166 :EYQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=102591 # 1z70X.464.34 read from T0547.t06.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)E471 (1z70X)A1114 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRLDE 1z70X 1107 :QIKQDGE T0547 472 :P 1z70X 1115 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=102593 # 1qyrA.464.160 read from T0547.t06.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)E470 (1qyrA)P183 because C (cis) conformation "forbidden" or filtered. T0547 464 :PLDRLD 1qyrA 177 :PPSAFT T0547 471 :EP 1qyrA 184 :PP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102595 # 1ng0A.464.184 read from T0547.t06.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)P472 (1ng0A)W193 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRLDEE 1ng0A 185 :PCDEFSNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=102596 # 1eybA.464.237 read from T0547.t06.many.frag # found chain 1eybA in template set Warning: unaligning (T0547)D466 (1eybA)G214 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1eybA)G217 because S (epsilon) conformation "forbidden" or filtered. T0547 464 :PL 1eybA 212 :DL T0547 467 :RL 1eybA 215 :PI T0547 470 :EEP 1eybA 218 :ANG Number of specific fragments extracted= 3 number of extra gaps= 2 total=102599 # 1iq4A.464.141 read from T0547.t06.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)P464 (1iq4A)D142 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1iq4A)K148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1iq4A)R150 because Y (epsilon') conformation "forbidden" or filtered. T0547 465 :LDRLD 1iq4A 143 :YDKVN T0547 471 :E 1iq4A 149 :V Number of specific fragments extracted= 2 number of extra gaps= 3 total=102601 # 1va6A.464.389 read from T0547.t06.many.frag # found chain 1va6A in template set Warning: unaligning (T0547)P464 (1va6A)T390 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 1va6A 391 :LGIGCETA Number of specific fragments extracted= 1 number of extra gaps= 1 total=102602 # 1sdeA.464.196 read from T0547.t06.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)P464 (1sdeA)F197 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L468 (1sdeA)P201 because C (cis) conformation "forbidden" or filtered. T0547 465 :LDR 1sdeA 198 :YVH T0547 469 :DEEP 1sdeA 202 :DTVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=102604 # 1o26A.464.113 read from T0547.t06.many.frag # found chain 1o26A in training set T0547 464 :PLDRLDEEP 1o26A 102 :SPERLEGYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=102605 # 1gp0A.464.20 read from T0547.t06.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)P464 (1gp0A)D1528 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1gp0A)G1534 because S (epsilon) conformation "forbidden" or filtered. T0547 465 :LDRLD 1gp0A 1529 :LSSLS T0547 471 :EP 1gp0A 1535 :RA Number of specific fragments extracted= 2 number of extra gaps= 2 total=102607 # 1dzkA.464.24 read from T0547.t06.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)P464 (1dzkA)D25 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1dzkA)G30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1dzkA)E31 because P (beta_P) conformation "forbidden" or filtered. T0547 465 :LDRL 1dzkA 26 :LEKI T0547 471 :EP 1dzkA 32 :NA Number of specific fragments extracted= 2 number of extra gaps= 2 total=102609 # 1suuA.464.192 read from T0547.t06.many.frag # found chain 1suuA in training set Warning: unaligning (T0547)D466 (1suuA)M693 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1suuA)G698 because T (delta_L) conformation "forbidden" or filtered. T0547 464 :PL 1suuA 691 :CG T0547 467 :RLDE 1suuA 694 :KLKE T0547 472 :P 1suuA 699 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=102612 # 4bcl.464.243 read from T0547.t06.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)P472 (4bcl)A252 because E (beta_S) conformation "forbidden" or filtered. T0547 464 :PLDRLDEE 4bcl 244 :PVEQLNKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=102613 # 1t6eX.464.125 read from T0547.t06.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)E470 (1t6eX)S132 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1t6eX)L133 because P (beta_P) conformation "forbidden" or filtered. T0547 464 :PLDRLD 1t6eX 126 :PSKLLA T0547 472 :P 1t6eX 134 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=102615 # 1ryoA.465.234 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)R467 (1ryoA)E237 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LD 1ryoA 235 :VD T0547 468 :LDEE 1ryoA 238 :YKDC T0547 473 :T 1ryoA 243 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=102618 # 1t82A.465.117 read from T0547.t06.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)E471 (1t82A)G114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDE 1t82A 108 :LSPLQR T0547 473 :T 1t82A 116 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=102620 # 2exrA.465.301 read from T0547.t06.many.frag # found chain 2exrA in training set T0547 465 :LDRLDEEPT 2exrA 302 :PTRLPQSCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=102621 # 1quqB.465.13 read from T0547.t06.many.frag # found chain 1quqB in template set T0547 465 :LDRLDEEPT 1quqB 14 :AGMLAQFID Number of specific fragments extracted= 1 number of extra gaps= 0 total=102622 # 1h2wA.465.265 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)E471 (1h2wA)G272 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1h2wA)T274 because G (3-10) conformation "forbidden" or filtered. T0547 465 :LDRLDE 1h2wA 266 :LQQESN T0547 472 :P 1h2wA 273 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=102624 # 1qyrA.465.161 read from T0547.t06.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)E470 (1qyrA)P183 because C (cis) conformation "forbidden" or filtered. T0547 465 :LDRLD 1qyrA 178 :PSAFT T0547 471 :EPT 1qyrA 184 :PPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=102626 # 2bj0A.465.123 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)R467 (2bj0A)N126 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (2bj0A)G132 because S (epsilon) conformation "forbidden" or filtered. T0547 465 :LD 2bj0A 124 :LI T0547 468 :LDEEP 2bj0A 127 :VDTEP Number of specific fragments extracted= 2 number of extra gaps= 2 total=102628 # 1bc5A.465.195 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D469 (1bc5A)E215 because P (beta_P) conformation "forbidden" or filtered. T0547 465 :LDRL 1bc5A 211 :VNLL T0547 470 :EEPT 1bc5A 216 :KQYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=102630 # 1xv5A.465.258 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)T473 (1xv5A)N1266 because L (left) conformation "forbidden" or filtered. T0547 465 :LDRLDEEP 1xv5A 1258 :IDKMNLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=102631 # 1pii.465.390 read from T0547.t06.many.frag # found chain 1pii in template set T0547 465 :LDRLDEEPT 1pii 391 :WSLLNGQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102632 # 1f8vA.465.212 read from T0547.t06.many.frag # found chain 1f8vA in template set Warning: unaligning (T0547)D469 (1f8vA)R223 because Y (epsilon') conformation "forbidden" or filtered. T0547 465 :LDRL 1f8vA 219 :LRGI T0547 470 :EEPT 1f8vA 224 :PLAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102634 # 1nxmA.465.51 read from T0547.t06.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)E471 (1nxmA)G58 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1nxmA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDE 1nxmA 52 :ESFFAE T0547 473 :T 1nxmA 60 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=102636 # 1z70X.465.35 read from T0547.t06.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)L465 (1z70X)I1108 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1z70X)G1112 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1z70X)P1115 because C (cis) conformation "forbidden" or filtered. T0547 466 :DRL 1z70X 1109 :KQD T0547 470 :EE 1z70X 1113 :EA T0547 473 :T 1z70X 1116 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=102639 # 1nlnA.465.154 read from T0547.t06.many.frag # found chain 1nlnA in training set Warning: unaligning (T0547)E470 (1nlnA)S160 because P (beta_P) conformation "forbidden" or filtered. T0547 465 :LDRLD 1nlnA 155 :NSMLN T0547 471 :EPT 1nlnA 161 :PQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=102641 # 1uxy.465.158 read from T0547.t06.many.frag # found chain 1uxy in training set Warning: unaligning (T0547)L465 (1uxy)S161 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRLDEEPT 1uxy 162 :IFKHEYQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=102642 # 1i4wA.465.242 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)E470 (1i4wA)P236 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1i4wA)K238 because L (left) conformation "forbidden" or filtered. T0547 465 :LDRLD 1i4wA 231 :AAEIW T0547 471 :E 1i4wA 237 :T T0547 473 :T 1i4wA 239 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=102645 # 1ikoP.465.74 read from T0547.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0547)P472 (1ikoP)V111 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1ikoP 104 :CARPDQD T0547 473 :T 1ikoP 112 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=102647 # 1t6eX.465.196 read from T0547.t06.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)E470 (1t6eX)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 465 :LDRLD 1t6eX 197 :LVTKG T0547 471 :EPT 1t6eX 203 :SPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=102649 # 2b5gA.465.42 read from T0547.t06.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)D469 (2b5gA)G47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (2b5gA)H49 because D (zeta) conformation "forbidden" or filtered. T0547 465 :LDRL 2b5gA 43 :EDGF T0547 470 :E 2b5gA 48 :E T0547 472 :PT 2b5gA 50 :PF Number of specific fragments extracted= 3 number of extra gaps= 2 total=102652 # 1ng0A.465.185 read from T0547.t06.many.frag # found chain 1ng0A in template set Warning: unaligning (T0547)P472 (1ng0A)W193 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1ng0A 186 :CDEFSNK T0547 473 :T 1ng0A 194 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=102654 # 1qwyA.465.115 read from T0547.t06.many.frag # found chain 1qwyA in training set Warning: unaligning (T0547)E470 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qwyA)S183 T0547 465 :LDRLD 1qwyA 141 :DASYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=102655 # 1sdeA.465.197 read from T0547.t06.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)L468 (1sdeA)P201 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1sdeA)V204 because P (beta_P) conformation "forbidden" or filtered. T0547 465 :LDR 1sdeA 198 :YVH T0547 469 :DE 1sdeA 202 :DT T0547 472 :PT 1sdeA 205 :IP Number of specific fragments extracted= 3 number of extra gaps= 2 total=102658 # 4bcl.465.244 read from T0547.t06.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)E470 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (4bcl)A252 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLD 4bcl 245 :VEQLN T0547 471 :E 4bcl 251 :P T0547 473 :T 4bcl 253 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=102661 # 1vp6A.465.44 read from T0547.t06.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1vp6A 262 :ICRIGEP T0547 473 :T 1vp6A 270 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=102663 # 1eybA.465.238 read from T0547.t06.many.frag # found chain 1eybA in template set Warning: unaligning (T0547)P472 (1eybA)G220 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1eybA)L221 because S (epsilon) conformation "forbidden" or filtered. T0547 465 :LDRLDEE 1eybA 213 :LGPIGAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=102664 # 1va6A.465.390 read from T0547.t06.many.frag # found chain 1va6A in template set Warning: unaligning (T0547)L468 (1va6A)G394 because S (epsilon) conformation "forbidden" or filtered. T0547 465 :LDR 1va6A 391 :LGI T0547 469 :DEEPT 1va6A 395 :CETAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=102666 # 1dzkA.465.25 read from T0547.t06.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)E470 (1dzkA)E31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1dzkA)N32 because L (left) conformation "forbidden" or filtered. T0547 465 :LDRLD 1dzkA 26 :LEKIG T0547 472 :PT 1dzkA 33 :AP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102668 # 1o26A.465.114 read from T0547.t06.many.frag # found chain 1o26A in training set Warning: unaligning (T0547)E470 (1o26A)G108 because T (delta_L) conformation "forbidden" or filtered. T0547 465 :LDRLD 1o26A 103 :PERLE T0547 471 :EPT 1o26A 109 :YKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=102670 # 1iq4A.465.142 read from T0547.t06.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)E470 (1iq4A)K148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1iq4A)V149 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1iq4A)R150 because Y (epsilon') conformation "forbidden" or filtered. T0547 465 :LDRLD 1iq4A 143 :YDKVN T0547 473 :T 1iq4A 151 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=102672 # 1ttuA.465.296 read from T0547.t06.many.frag # found chain 1ttuA in template set Warning: unaligning (T0547)E470 (1ttuA)E488 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1ttuA)P489 because P (beta_P) conformation "forbidden" or filtered. T0547 465 :LDRLD 1ttuA 483 :ASCSE T0547 472 :PT 1ttuA 490 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=102674 # 1ryoA.466.235 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)E471 (1ryoA)C241 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1ryoA)A244 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRLDE 1ryoA 236 :DEYKD T0547 473 :T 1ryoA 243 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=102676 # 2exrA.466.302 read from T0547.t06.many.frag # found chain 2exrA in training set T0547 466 :DRLDEEPTR 2exrA 303 :TRLPQSCGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=102677 # 1t82A.466.118 read from T0547.t06.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)E471 (1t82A)G114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRLDE 1t82A 109 :SPLQR T0547 473 :TR 1t82A 116 :KA Number of specific fragments extracted= 2 number of extra gaps= 1 total=102679 # 1quqB.466.14 read from T0547.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)T473 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0547 466 :DRLDEEP 1quqB 15 :GMLAQFI T0547 474 :R 1quqB 23 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=102681 # 2bj0A.466.124 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)E470 (2bj0A)T129 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (2bj0A)G132 because S (epsilon) conformation "forbidden" or filtered. T0547 466 :DRLD 2bj0A 125 :INVD T0547 471 :EP 2bj0A 130 :EP T0547 474 :R 2bj0A 133 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=102684 # 1bc5A.466.196 read from T0547.t06.many.frag # found chain 1bc5A in template set T0547 466 :DRLDEEPTR 1bc5A 212 :NLLEKQYNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=102685 # 1h2wA.466.266 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)E470 (1h2wA)N271 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1h2wA)G272 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1h2wA)T274 because G (3-10) conformation "forbidden" or filtered. T0547 466 :DRLD 1h2wA 267 :QQES T0547 472 :P 1h2wA 273 :I T0547 474 :R 1h2wA 275 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=102688 # 1qyrA.466.162 read from T0547.t06.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)D469 (1qyrA)T182 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1qyrA)P183 because C (cis) conformation "forbidden" or filtered. T0547 466 :DRL 1qyrA 179 :SAF T0547 471 :EPTR 1qyrA 184 :PPKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=102690 # 1z70X.466.36 read from T0547.t06.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)D469 (1z70X)G1112 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1z70X)A1114 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRL 1z70X 1109 :KQD T0547 470 :E 1z70X 1113 :E T0547 472 :PTR 1z70X 1115 :PAR Number of specific fragments extracted= 3 number of extra gaps= 2 total=102693 # 1xv5A.466.259 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)E471 (1xv5A)A1264 because P (beta_P) conformation "forbidden" or filtered. T0547 466 :DRLDE 1xv5A 1259 :DKMNL T0547 472 :PTR 1xv5A 1265 :PNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=102695 # 2b5gA.466.43 read from T0547.t06.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R467 (2b5gA)G45 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :D 2b5gA 44 :D T0547 468 :LDEEPT 2b5gA 46 :FGEHPF Number of specific fragments extracted= 2 number of extra gaps= 2 total=102697 # 1nxmA.466.52 read from T0547.t06.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)E471 (1nxmA)G58 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1nxmA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRLDE 1nxmA 53 :SFFAE T0547 473 :TR 1nxmA 60 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=102699 # 1f8vA.466.213 read from T0547.t06.many.frag # found chain 1f8vA in template set Warning: unaligning (T0547)D469 (1f8vA)R223 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRL 1f8vA 220 :RGI T0547 470 :EEPTR 1f8vA 224 :PLAPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=102701 # 1pii.466.391 read from T0547.t06.many.frag # found chain 1pii in template set T0547 466 :DRLDEEPTR 1pii 392 :SLLNGQSLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=102702 # 1uxy.466.159 read from T0547.t06.many.frag # found chain 1uxy in training set Warning: unaligning (T0547)D469 (1uxy)H165 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRL 1uxy 162 :IFK T0547 470 :EEPTR 1uxy 166 :EYQDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=102704 # 1ikoP.466.75 read from T0547.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0547)P472 (1ikoP)V111 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRLDEE 1ikoP 105 :ARPDQD T0547 473 :TR 1ikoP 112 :KF Number of specific fragments extracted= 2 number of extra gaps= 1 total=102706 # 1t6eX.466.197 read from T0547.t06.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)D469 (1t6eX)G201 because P (beta_P) conformation "forbidden" or filtered. T0547 466 :DRL 1t6eX 198 :VTK T0547 470 :EEPTR 1t6eX 202 :GSPAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=102708 # 1i4wA.466.243 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)P472 (1i4wA)K238 because L (left) conformation "forbidden" or filtered. T0547 466 :DRLDEE 1i4wA 232 :AEIWPT T0547 473 :TR 1i4wA 239 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=102710 # 1vp6A.466.45 read from T0547.t06.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)D469 (1vp6A)G266 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1vp6A)R271 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRL 1vp6A 263 :CRI T0547 470 :EE 1vp6A 267 :EP T0547 473 :T 1vp6A 270 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=102713 # 1sdeA.466.198 read from T0547.t06.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)L468 (1sdeA)P201 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1sdeA)G207 because S (epsilon) conformation "forbidden" or filtered. T0547 466 :DR 1sdeA 199 :VH T0547 469 :DEEPT 1sdeA 202 :DTVIP Number of specific fragments extracted= 2 number of extra gaps= 2 total=102715 # 1i7nA.466.144 read from T0547.t06.many.frag # found chain 1i7nA in template set Warning: unaligning (T0547)E471 (1i7nA)L262 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1i7nA)F265 because P (beta_P) conformation "forbidden" or filtered. T0547 466 :DRLDE 1i7nA 257 :REMLT T0547 472 :PT 1i7nA 263 :PT Number of specific fragments extracted= 2 number of extra gaps= 2 total=102717 # 1va6A.466.391 read from T0547.t06.many.frag # found chain 1va6A in template set Warning: unaligning (T0547)E471 (1va6A)T397 because P (beta_P) conformation "forbidden" or filtered. T0547 466 :DRLDE 1va6A 392 :GIGCE T0547 472 :PTR 1va6A 398 :AQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=102719 # 1zxuA.466.30 read from T0547.t06.many.frag # found chain 1zxuA in training set Warning: unaligning (T0547)D469 (1zxuA)A34 because P (beta_P) conformation "forbidden" or filtered. T0547 466 :DRL 1zxuA 31 :KYC T0547 470 :EEPTR 1zxuA 35 :PYPID Number of specific fragments extracted= 2 number of extra gaps= 1 total=102721 # 1ttuA.466.297 read from T0547.t06.many.frag # found chain 1ttuA in template set T0547 466 :DRLDEEPTR 1ttuA 484 :SCSEEPVSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=102722 # 1eybA.466.239 read from T0547.t06.many.frag # found chain 1eybA in template set Warning: unaligning (T0547)D466 (1eybA)G214 because S (epsilon) conformation "forbidden" or filtered. T0547 467 :RLDEEPTR 1eybA 215 :PIGANGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=102723 # 1suuA.466.194 read from T0547.t06.many.frag # found chain 1suuA in training set Warning: unaligning (T0547)D466 (1suuA)M693 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D469 (1suuA)K696 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1suuA)G698 because T (delta_L) conformation "forbidden" or filtered. T0547 467 :RL 1suuA 694 :KL T0547 470 :E 1suuA 697 :E T0547 472 :PTR 1suuA 699 :DLF Number of specific fragments extracted= 3 number of extra gaps= 3 total=102726 # 1bco.466.273 read from T0547.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0547)E471 (1bco)A526 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1bco)G527 because D (zeta) conformation "forbidden" or filtered. T0547 466 :DRLDE 1bco 521 :MALMN T0547 473 :TR 1bco 528 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=102728 # 1iq4A.466.143 read from T0547.t06.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)E471 (1iq4A)V149 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1iq4A)R150 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1iq4A)M152 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRLDE 1iq4A 144 :DKVNK T0547 473 :T 1iq4A 151 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=102730 # 1gp0A.466.22 read from T0547.t06.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)D469 (1gp0A)S1533 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1gp0A)G1537 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1gp0A)F1538 because Y (epsilon') conformation "forbidden" or filtered. T0547 466 :DRL 1gp0A 1530 :SSL T0547 470 :EEP 1gp0A 1534 :GRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=102732 # 4bcl.466.245 read from T0547.t06.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)P472 (4bcl)A252 because E (beta_S) conformation "forbidden" or filtered. T0547 466 :DRLDEE 4bcl 246 :EQLNKP T0547 473 :TR 4bcl 253 :SI Number of specific fragments extracted= 2 number of extra gaps= 1 total=102734 # 2exrA.467.303 read from T0547.t06.many.frag # found chain 2exrA in training set T0547 467 :RLDEEPTRS 2exrA 304 :RLPQSCGSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=102735 # 1ryoA.467.236 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)E471 (1ryoA)C241 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1ryoA)A244 because Y (epsilon') conformation "forbidden" or filtered. T0547 467 :RLDE 1ryoA 237 :EYKD T0547 473 :T 1ryoA 243 :L T0547 475 :S 1ryoA 245 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=102738 # 2bj0A.467.125 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)T473 (2bj0A)G132 because S (epsilon) conformation "forbidden" or filtered. T0547 467 :RLDEEP 2bj0A 126 :NVDTEP T0547 474 :RS 2bj0A 133 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=102740 # 1bc5A.467.197 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D469 (1bc5A)E215 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1bc5A)Q217 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RL 1bc5A 213 :LL T0547 470 :E 1bc5A 216 :K T0547 472 :PTRS 1bc5A 218 :YNVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=102743 # 1h2wA.467.267 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)E470 (1h2wA)N271 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1h2wA)G275 because Y (epsilon') conformation "forbidden" or filtered. T0547 467 :RLD 1h2wA 268 :QES T0547 471 :EPT 1h2wA 272 :GIT T0547 475 :S 1h2wA 276 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=102746 # 1qyrA.467.163 read from T0547.t06.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)E470 (1qyrA)P183 because C (cis) conformation "forbidden" or filtered. T0547 467 :RLD 1qyrA 180 :AFT T0547 471 :EPTRS 1qyrA 184 :PPKVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=102748 # 1t82A.467.119 read from T0547.t06.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RLDEE 1t82A 110 :PLQRG T0547 473 :TRS 1t82A 116 :KAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=102750 # 2b5gA.467.44 read from T0547.t06.many.frag # found chain 2b5gA in training set T0547 467 :RLDEEPTRS 2b5gA 45 :GFGEHPFYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=102751 # 1quqB.467.15 read from T0547.t06.many.frag # found chain 1quqB in template set T0547 467 :RLDEEPTRS 1quqB 16 :MLAQFIDKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=102752 # 1z70X.467.37 read from T0547.t06.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)D469 (1z70X)G1112 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1z70X)P1115 because C (cis) conformation "forbidden" or filtered. T0547 467 :RL 1z70X 1110 :QD T0547 470 :EE 1z70X 1113 :EA T0547 473 :TRS 1z70X 1116 :ARR Number of specific fragments extracted= 3 number of extra gaps= 2 total=102755 # 1xv5A.467.260 read from T0547.t06.many.frag # found chain 1xv5A in training set T0547 467 :RLDEEPTRS 1xv5A 1260 :KMNLAPNQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=102756 # 1nxmA.467.53 read from T0547.t06.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)E471 (1nxmA)G58 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1nxmA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RLDE 1nxmA 54 :FFAE T0547 473 :TRS 1nxmA 60 :LQN Number of specific fragments extracted= 2 number of extra gaps= 1 total=102758 # 1vp6A.467.46 read from T0547.t06.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)D469 (1vp6A)G266 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1vp6A)R271 because Y (epsilon') conformation "forbidden" or filtered. T0547 467 :RL 1vp6A 264 :RI T0547 470 :EE 1vp6A 267 :EP T0547 473 :T 1vp6A 270 :D T0547 475 :S 1vp6A 272 :M Number of specific fragments extracted= 4 number of extra gaps= 3 total=102762 # 1ikoP.467.76 read from T0547.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0547)R467 (1ikoP)R106 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ikoP)V111 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :LD 1ikoP 107 :PD T0547 471 :E 1ikoP 110 :D T0547 473 :TRS 1ikoP 112 :KFT Number of specific fragments extracted= 3 number of extra gaps= 3 total=102765 # 1t6eX.467.198 read from T0547.t06.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)D469 (1t6eX)G201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1t6eX)G202 because T (delta_L) conformation "forbidden" or filtered. T0547 467 :RL 1t6eX 199 :TK T0547 471 :EPTRS 1t6eX 203 :SPAHY Number of specific fragments extracted= 2 number of extra gaps= 1 total=102767 # 1uxy.467.160 read from T0547.t06.many.frag # found chain 1uxy in training set Warning: unaligning (T0547)D469 (1uxy)H165 because Y (epsilon') conformation "forbidden" or filtered. T0547 467 :RL 1uxy 163 :FK T0547 470 :EEPTRS 1uxy 166 :EYQDRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=102769 # 1f8vA.467.214 read from T0547.t06.many.frag # found chain 1f8vA in template set T0547 467 :RLDEEPTRS 1f8vA 221 :GIRPLAPRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=102770 # 1zxuA.467.31 read from T0547.t06.many.frag # found chain 1zxuA in training set T0547 467 :RLDEEPTRS 1zxuA 32 :YCAPYPIDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=102771 # 1i7nA.467.145 read from T0547.t06.many.frag # found chain 1i7nA in template set Warning: unaligning (T0547)S475 (1i7nA)P266 because C (cis) conformation "forbidden" or filtered. T0547 467 :RLDEEPTR 1i7nA 258 :EMLTLPTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=102772 # 1sdeA.467.199 read from T0547.t06.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)L468 (1sdeA)P201 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1sdeA)T208 because P (beta_P) conformation "forbidden" or filtered. T0547 467 :R 1sdeA 200 :H T0547 469 :DEEPTR 1sdeA 202 :DTVIPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=102774 # 1suuA.467.195 read from T0547.t06.many.frag # found chain 1suuA in training set Warning: unaligning (T0547)R467 (1suuA)K694 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1suuA)G698 because T (delta_L) conformation "forbidden" or filtered. T0547 468 :LDE 1suuA 695 :LKE T0547 472 :PTRS 1suuA 699 :DLFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=102776 # 1i4wA.467.244 read from T0547.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0547)E470 (1i4wA)P236 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1i4wA)T237 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1i4wA)K238 because L (left) conformation "forbidden" or filtered. T0547 467 :RLD 1i4wA 233 :EIW T0547 473 :TRS 1i4wA 239 :GKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102778 # 1va6A.467.392 read from T0547.t06.many.frag # found chain 1va6A in template set Warning: unaligning (T0547)L468 (1va6A)G394 because S (epsilon) conformation "forbidden" or filtered. T0547 467 :R 1va6A 393 :I T0547 469 :DEEPTRS 1va6A 395 :CETAQFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=102780 # 1bco.467.274 read from T0547.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0547)P472 (1bco)G527 because D (zeta) conformation "forbidden" or filtered. T0547 467 :RLDEE 1bco 522 :ALMNA T0547 473 :TRS 1bco 528 :VKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=102782 # 1dmhA.467.141 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E470 (1dmhA)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1dmhA)N150 because T (delta_L) conformation "forbidden" or filtered. T0547 467 :RLD 1dmhA 142 :DAD T0547 471 :EPTR 1dmhA 146 :KPLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=102784 # 1gsoA.467.322 read from T0547.t06.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)E470 (1gsoA)S324 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1gsoA)W326 because E (beta_S) conformation "forbidden" or filtered. T0547 467 :RLD 1gsoA 321 :EKT T0547 471 :E 1gsoA 325 :E T0547 473 :TRS 1gsoA 327 :DER Number of specific fragments extracted= 3 number of extra gaps= 2 total=102787 # 1rx0A.467.214 read from T0547.t06.many.frag # found chain 1rx0A in training set Warning: unaligning (T0547)R467 (1rx0A)G215 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1rx0A)R222 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDEEPT 1rx0A 216 :WNSQPT T0547 475 :S 1rx0A 223 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=102789 # 1fjgL.467.25 read from T0547.t06.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)E470 (1fjgL)G29 because L (left) conformation "forbidden" or filtered. T0547 467 :RLD 1fjgL 26 :ALK T0547 471 :EPTRS 1fjgL 30 :APFRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=102791 # 1ttuA.467.298 read from T0547.t06.many.frag # found chain 1ttuA in template set Warning: unaligning (T0547)S475 (1ttuA)L493 because L (left) conformation "forbidden" or filtered. T0547 467 :RLDEEPTR 1ttuA 485 :CSEEPVSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=102792 # 1qg3A.467.57 read from T0547.t06.many.frag # found chain 1qg3A in template set Warning: unaligning (T0547)D469 (1qg3A)N1185 because L (left) conformation "forbidden" or filtered. T0547 467 :RL 1qg3A 1183 :LT T0547 470 :EEPTRS 1qg3A 1186 :LYPYCD Number of specific fragments extracted= 2 number of extra gaps= 1 total=102794 # 1ryoA.468.237 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1ryoA)A244 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1ryoA)V246 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :LDEE 1ryoA 238 :YKDC T0547 473 :T 1ryoA 243 :L T0547 475 :S 1ryoA 245 :Q Number of specific fragments extracted= 3 number of extra gaps= 3 total=102797 # 2exrA.468.304 read from T0547.t06.many.frag # found chain 2exrA in training set T0547 468 :LDEEPTRSA 2exrA 305 :LPQSCGSVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102798 # 2bj0A.468.126 read from T0547.t06.many.frag # found chain 2bj0A in template set T0547 468 :LDEEPTRSA 2bj0A 127 :VDTEPGATC Number of specific fragments extracted= 1 number of extra gaps= 0 total=102799 # 1bc5A.468.198 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D469 (1bc5A)E215 because P (beta_P) conformation "forbidden" or filtered. T0547 468 :L 1bc5A 214 :L T0547 470 :EEPTRSA 1bc5A 216 :KQYNVPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=102801 # 2b5gA.468.45 read from T0547.t06.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDEEPT 2b5gA 46 :FGEHPF T0547 475 :SA 2b5gA 53 :HC Number of specific fragments extracted= 2 number of extra gaps= 1 total=102803 # 1qyrA.468.164 read from T0547.t06.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)E470 (1qyrA)P183 because C (cis) conformation "forbidden" or filtered. T0547 468 :LD 1qyrA 181 :FT T0547 471 :EPTRSA 1qyrA 184 :PPKVDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=102805 # 1h2wA.468.268 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)R474 (1h2wA)G275 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1h2wA)L277 because P (beta_P) conformation "forbidden" or filtered. T0547 468 :LDEEPT 1h2wA 269 :ESNGIT T0547 475 :S 1h2wA 276 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=102807 # 1vp6A.468.47 read from T0547.t06.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)E471 (1vp6A)P268 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1vp6A)F273 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :LDE 1vp6A 265 :IGE T0547 473 :TRS 1vp6A 270 :DRM Number of specific fragments extracted= 2 number of extra gaps= 2 total=102809 # 1quqB.468.16 read from T0547.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)T473 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDEEP 1quqB 17 :LAQFI T0547 474 :RS 1quqB 23 :KP Number of specific fragments extracted= 2 number of extra gaps= 2 total=102811 # 1t6eX.468.199 read from T0547.t06.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)E470 (1t6eX)G202 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1t6eX)I208 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LD 1t6eX 200 :KG T0547 471 :EPTRS 1t6eX 203 :SPAHY Number of specific fragments extracted= 2 number of extra gaps= 2 total=102813 # 1jc9A.468.146 read from T0547.t06.many.frag # found chain 1jc9A in template set Warning: unaligning (T0547)E471 (1jc9A)N150 because T (delta_L) conformation "forbidden" or filtered. T0547 468 :LDE 1jc9A 147 :DKE T0547 472 :PTRSA 1jc9A 151 :DTRYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=102815 # 1z70X.468.38 read from T0547.t06.many.frag # found chain 1z70X in training set Warning: unaligning (T0547)D469 (1z70X)G1112 because L (left) conformation "forbidden" or filtered. T0547 468 :L 1z70X 1111 :D T0547 470 :EEPTRSA 1z70X 1113 :EAPARRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=102817 # 1xv5A.468.261 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)D469 (1xv5A)N1262 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1xv5A)N1266 because L (left) conformation "forbidden" or filtered. T0547 468 :L 1xv5A 1261 :M T0547 470 :EEP 1xv5A 1263 :LAP T0547 474 :RSA 1xv5A 1267 :QPA Number of specific fragments extracted= 3 number of extra gaps= 2 total=102820 # 1t82A.468.120 read from T0547.t06.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)E471 (1t82A)G114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :LDE 1t82A 111 :LQR T0547 473 :TRSA 1t82A 116 :KAKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=102822 # 1nxmA.468.54 read from T0547.t06.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)E471 (1nxmA)G58 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1nxmA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :LDE 1nxmA 55 :FAE T0547 473 :TRSA 1nxmA 60 :LQNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=102824 # 1ikoP.468.77 read from T0547.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0547)E470 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ikoP)V111 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :LD 1ikoP 107 :PD T0547 471 :E 1ikoP 110 :D T0547 473 :TRSA 1ikoP 112 :KFTI Number of specific fragments extracted= 3 number of extra gaps= 2 total=102827 # 1suuA.468.196 read from T0547.t06.many.frag # found chain 1suuA in training set Warning: unaligning (T0547)E470 (1suuA)E697 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1suuA)G698 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE in next template residue (1suuA)V704 T0547 468 :LD 1suuA 695 :LK T0547 472 :PTRS 1suuA 699 :DLFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=102829 # 1rx0A.468.215 read from T0547.t06.many.frag # found chain 1rx0A in training set Warning: unaligning (T0547)R474 (1rx0A)R222 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDEEPT 1rx0A 216 :WNSQPT T0547 475 :SA 1rx0A 223 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=102831 # 1fjgL.468.26 read from T0547.t06.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)D469 (1fjgL)K28 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1fjgL)G29 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1fjgL)R34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1fjgL)G35 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :L 1fjgL 27 :L T0547 471 :EPTR 1fjgL 30 :APFR Number of specific fragments extracted= 2 number of extra gaps= 2 total=102833 # 2a13A.468.68 read from T0547.t06.many.frag # found chain 2a13A in training set T0547 468 :LDEEPTRSA 2a13A 69 :LESGAPMHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=102834 # 1uxy.468.161 read from T0547.t06.many.frag # found chain 1uxy in training set Warning: unaligning (T0547)D469 (1uxy)H165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1uxy)D169 because T (delta_L) conformation "forbidden" or filtered. T0547 468 :L 1uxy 164 :K T0547 470 :EEP 1uxy 166 :EYQ T0547 474 :RSA 1uxy 170 :RFA Number of specific fragments extracted= 3 number of extra gaps= 2 total=102837 # 1zxuA.468.32 read from T0547.t06.many.frag # found chain 1zxuA in training set T0547 468 :LDEEPTRSA 1zxuA 33 :CAPYPIDMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=102838 # 1qg3A.468.58 read from T0547.t06.many.frag # found chain 1qg3A in template set Warning: unaligning (T0547)D469 (1qg3A)N1185 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1qg3A)Y1189 because L (left) conformation "forbidden" or filtered. T0547 468 :L 1qg3A 1184 :T T0547 470 :EEP 1qg3A 1186 :LYP T0547 474 :RSA 1qg3A 1190 :CDY Number of specific fragments extracted= 3 number of extra gaps= 2 total=102841 # 1gsoA.468.323 read from T0547.t06.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)P472 (1gsoA)W326 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1gsoA)A330 because P (beta_P) conformation "forbidden" or filtered. T0547 468 :LDEE 1gsoA 322 :KTSE T0547 473 :TRS 1gsoA 327 :DER Number of specific fragments extracted= 2 number of extra gaps= 2 total=102843 # 1i7nA.468.146 read from T0547.t06.many.frag # found chain 1i7nA in template set Warning: unaligning (T0547)S475 (1i7nA)P266 because C (cis) conformation "forbidden" or filtered. T0547 468 :LDEEPTR 1i7nA 259 :MLTLPTF T0547 476 :A 1i7nA 267 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=102845 # 1sdeA.468.200 read from T0547.t06.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)L468 (1sdeA)P201 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1sdeA)G207 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1sdeA)H209 because E (beta_S) conformation "forbidden" or filtered. T0547 469 :DEEPT 1sdeA 202 :DTVIP T0547 475 :S 1sdeA 208 :T Number of specific fragments extracted= 2 number of extra gaps= 3 total=102847 # 1ewnA.468.31 read from T0547.t06.many.frag # found chain 1ewnA in template set T0547 468 :LDEEPTRSA 1ewnA 111 :LPNGTELRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=102848 # 2ew0A.468.113 read from T0547.t06.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)D469 (2ew0A)N115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (2ew0A)G117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (2ew0A)R120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (2ew0A)Y121 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :L 2ew0A 114 :H T0547 470 :E 2ew0A 116 :E T0547 472 :PT 2ew0A 118 :VG T0547 476 :A 2ew0A 122 :Q Number of specific fragments extracted= 4 number of extra gaps= 3 total=102852 # 1tovA.468.24 read from T0547.t06.many.frag # found chain 1tovA in training set Warning: unaligning (T0547)A476 (1tovA)G164 because Y (epsilon') conformation "forbidden" or filtered. T0547 468 :LDEEPTRS 1tovA 156 :VGAQMARR Number of specific fragments extracted= 1 number of extra gaps= 1 total=102853 # 1jtgB.468.118 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)D469 (1jtgB)P120 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1jtgB)S121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1jtgB)G124 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1jtgB)L127 because E (beta_S) conformation "forbidden" or filtered. T0547 468 :L 1jtgB 119 :Y T0547 471 :EP 1jtgB 122 :TA T0547 474 :RS 1jtgB 125 :VT Number of specific fragments extracted= 3 number of extra gaps= 3 total=102856 # 1ryoA.469.238 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1ryoA)A244 because Y (epsilon') conformation "forbidden" or filtered. T0547 469 :DEE 1ryoA 239 :KDC T0547 473 :T 1ryoA 243 :L T0547 475 :SAS 1ryoA 245 :QVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=102859 # 2b5gA.469.46 read from T0547.t06.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)E471 (2b5gA)H49 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. T0547 469 :DE 2b5gA 47 :GE T0547 472 :PT 2b5gA 50 :PF T0547 475 :SAS 2b5gA 53 :HCL Number of specific fragments extracted= 3 number of extra gaps= 2 total=102862 # 1qyrA.469.165 read from T0547.t06.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)D469 (1qyrA)T182 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1qyrA)P183 because C (cis) conformation "forbidden" or filtered. T0547 471 :EPTRSAS 1qyrA 184 :PPKVDSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=102863 # 2exrA.469.305 read from T0547.t06.many.frag # found chain 2exrA in training set Warning: unaligning (T0547)A476 (2exrA)L313 because E (beta_S) conformation "forbidden" or filtered. T0547 469 :DEEPTRS 2exrA 306 :PQSCGSV T0547 477 :S 2exrA 314 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=102865 # 2bj0A.469.127 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)A476 (2bj0A)C135 because E (beta_S) conformation "forbidden" or filtered. T0547 469 :DEEPTRS 2bj0A 128 :DTEPGAT T0547 477 :S 2bj0A 136 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=102867 # 1bc5A.469.199 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)D469 (1bc5A)E215 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (1bc5A)P223 because C (cis) conformation "forbidden" or filtered. T0547 470 :EEPTRSA 1bc5A 216 :KQYNVPG Number of specific fragments extracted= 1 number of extra gaps= 2 total=102868 # 1jc9A.469.147 read from T0547.t06.many.frag # found chain 1jc9A in template set T0547 469 :DEEPTRSAS 1jc9A 148 :KENDTRYAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=102869 # 1vp6A.469.48 read from T0547.t06.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)E470 (1vp6A)E267 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 469 :D 1vp6A 266 :G T0547 471 :E 1vp6A 268 :P T0547 473 :TRSAS 1vp6A 270 :DRMFF Number of specific fragments extracted= 3 number of extra gaps= 2 total=102872 # 1ewnA.469.32 read from T0547.t06.many.frag # found chain 1ewnA in template set T0547 469 :DEEPTRSAS 1ewnA 112 :PNGTELRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=102873 # 1tovA.469.25 read from T0547.t06.many.frag # found chain 1tovA in training set Warning: unaligning (T0547)D469 (1tovA)G157 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E471 (1tovA)Q159 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1tovA)R163 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1tovA)G164 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :E 1tovA 158 :A T0547 472 :PTR 1tovA 160 :MAR T0547 477 :S 1tovA 165 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=102876 # 1h2wA.469.269 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)E471 (1h2wA)G272 because S (epsilon) conformation "forbidden" or filtered. T0547 469 :DE 1h2wA 270 :SN T0547 472 :PTRSAS 1h2wA 273 :ITGILK Number of specific fragments extracted= 2 number of extra gaps= 1 total=102878 # 1rx0A.469.216 read from T0547.t06.many.frag # found chain 1rx0A in training set T0547 469 :DEEPTRSAS 1rx0A 217 :NSQPTRAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=102879 # 1quqB.469.17 read from T0547.t06.many.frag # found chain 1quqB in template set T0547 469 :DEEPTRSAS 1quqB 18 :AQFIDKPVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=102880 # 2a13A.469.69 read from T0547.t06.many.frag # found chain 2a13A in training set Warning: unaligning (T0547)S477 (2a13A)E78 because Y (epsilon') conformation "forbidden" or filtered. T0547 469 :DEEPTRSA 2a13A 70 :ESGAPMHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=102881 # 1vh4A.469.146 read from T0547.t06.many.frag # found chain 1vh4A in training set Warning: unaligning (T0547)D469 (1vh4A)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1vh4A)P151 because P (beta_P) conformation "forbidden" or filtered. T0547 470 :EEPTR 1vh4A 146 :QRPAK T0547 476 :AS 1vh4A 152 :LL Number of specific fragments extracted= 2 number of extra gaps= 2 total=102883 # 1xv5A.469.262 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)T473 (1xv5A)N1266 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (1xv5A)Q1270 because P (beta_P) conformation "forbidden" or filtered. T0547 469 :DEEP 1xv5A 1262 :NLAP T0547 474 :RSA 1xv5A 1267 :QPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=102885 2cxvA expands to /projects/compbio/data/pdb/2cxv.pdb.gz 2cxvA:# 2cxvA.469.109 read from T0547.t06.many.frag # adding 2cxvA to template set # found chain 2cxvA in template set Warning: unaligning (T0547)T473 (2cxvA)N114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (2cxvA)L116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (2cxvA)A117 because Y (epsilon') conformation "forbidden" or filtered. T0547 469 :DEEP 2cxvA 110 :PRAL T0547 474 :R 2cxvA 115 :R T0547 477 :S 2cxvA 118 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=102888 # 1uxy.469.162 read from T0547.t06.many.frag # found chain 1uxy in training set Warning: unaligning (T0547)D469 (1uxy)H165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1uxy)D169 because T (delta_L) conformation "forbidden" or filtered. T0547 470 :EEP 1uxy 166 :EYQ T0547 474 :RSAS 1uxy 170 :RFAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=102890 # 1gsoA.469.324 read from T0547.t06.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)P472 (1gsoA)W326 because E (beta_S) conformation "forbidden" or filtered. T0547 469 :DEE 1gsoA 323 :TSE T0547 473 :TRSAS 1gsoA 327 :DERAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=102892 # 1fjgL.469.27 read from T0547.t06.many.frag # found chain 1fjgL in template set Warning: unaligning (T0547)E470 (1fjgL)G29 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1fjgL)F32 because Y (epsilon') conformation "forbidden" or filtered. T0547 469 :D 1fjgL 28 :K T0547 471 :EP 1fjgL 30 :AP T0547 474 :RSAS 1fjgL 33 :RRGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=102895 # 1nxmA.469.55 read from T0547.t06.many.frag # found chain 1nxmA in training set Warning: unaligning (T0547)P472 (1nxmA)K59 because E (beta_S) conformation "forbidden" or filtered. T0547 469 :DEE 1nxmA 56 :AEG T0547 473 :TRSAS 1nxmA 60 :LQNNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=102897 # 1jtgB.469.119 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)D469 (1jtgB)P120 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1jtgB)G124 because T (delta_L) conformation "forbidden" or filtered. T0547 470 :EEP 1jtgB 121 :STA T0547 474 :RSAS 1jtgB 125 :VTLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=102899 # 1t6eX.469.200 read from T0547.t06.many.frag # found chain 1t6eX in training set Warning: unaligning (T0547)D469 (1t6eX)G201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E470 (1t6eX)G202 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1t6eX)I208 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EPTRS 1t6eX 203 :SPAHY T0547 477 :S 1t6eX 209 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=102901 # 2akaA.469.453 read from T0547.t06.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)R474 (2akaA)Y448 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (2akaA)F449 because Y (epsilon') conformation "forbidden" or filtered. T0547 469 :DEEPT 2akaA 443 :QERKA T0547 476 :AS 2akaA 450 :IG Number of specific fragments extracted= 2 number of extra gaps= 1 total=102903 # 2ew0A.469.114 read from T0547.t06.many.frag # found chain 2ew0A in training set Warning: unaligning (T0547)D469 (2ew0A)N115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (2ew0A)G119 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (2ew0A)Y121 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EEP 2ew0A 116 :EGV T0547 474 :R 2ew0A 120 :R T0547 476 :AS 2ew0A 122 :QI Number of specific fragments extracted= 3 number of extra gaps= 3 total=102906 # 1dmhA.469.143 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E470 (1dmhA)G145 because T (delta_L) conformation "forbidden" or filtered. T0547 469 :D 1dmhA 144 :D T0547 471 :EPTRSAS 1dmhA 146 :KPLPNAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=102908 # 1z70X.469.39 read from T0547.t06.many.frag # found chain 1z70X in training set T0547 469 :DEEPTRSAS 1z70X 1112 :GEAPARRVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=102909 # 1t82A.469.121 read from T0547.t06.many.frag # found chain 1t82A in training set Warning: unaligning (T0547)E471 (1t82A)G114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1t82A)R115 because E (beta_S) conformation "forbidden" or filtered. T0547 469 :DE 1t82A 112 :QR T0547 473 :TRSAS 1t82A 116 :KAKVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=102911 # 2f8lA.469.290 read from T0547.t06.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)E470 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2f8lA)Q282 Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)Q282 Warning: unaligning (T0547)T473 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)A283 T0547 469 :D 2f8lA 279 :K T0547 474 :RSAS 2f8lA 284 :RKSI Number of specific fragments extracted= 2 number of extra gaps= 0 total=102913 # 1nls.469.40 read from T0547.t06.many.frag # found chain 1nls in training set Warning: unaligning (T0547)E470 (1nls)M42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1nls)G45 because T (delta_L) conformation "forbidden" or filtered. T0547 469 :D 1nls 41 :N T0547 471 :EP 1nls 43 :QN T0547 474 :RSAS 1nls 46 :KVGT Number of specific fragments extracted= 3 number of extra gaps= 2 total=102916 # 1qyrA.470.166 read from T0547.t06.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)E470 (1qyrA)P183 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1qyrA)S189 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (1qyrA)A190 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EPTRS 1qyrA 184 :PPKVD T0547 478 :I 1qyrA 191 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=102918 # 2b5gA.470.47 read from T0547.t06.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)A476 (2b5gA)C54 because E (beta_S) conformation "forbidden" or filtered. T0547 470 :EEPTRS 2b5gA 48 :EHPFYH T0547 477 :SI 2b5gA 55 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=102920 # 1ryoA.470.239 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1ryoA)A244 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EE 1ryoA 240 :DC T0547 473 :T 1ryoA 243 :L T0547 475 :SASI 1ryoA 245 :QVPS Number of specific fragments extracted= 3 number of extra gaps= 2 total=102923 # 1jc9A.470.148 read from T0547.t06.many.frag # found chain 1jc9A in template set T0547 470 :EEPTRSASI 1jc9A 149 :ENDTRYAIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=102924 # 2exrA.470.306 read from T0547.t06.many.frag # found chain 2exrA in training set T0547 470 :EEPTRSASI 2exrA 307 :QSCGSVLYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=102925 # 1tovA.470.26 read from T0547.t06.many.frag # found chain 1tovA in training set T0547 470 :EEPTRSASI 1tovA 158 :AQMARRGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=102926 # 1bc5A.470.200 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)S477 (1bc5A)P223 because C (cis) conformation "forbidden" or filtered. T0547 470 :EEPTRSA 1bc5A 216 :KQYNVPG T0547 478 :I 1bc5A 224 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=102928 # 1ewnA.470.33 read from T0547.t06.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)E471 (1ewnA)G114 because T (delta_L) conformation "forbidden" or filtered. T0547 470 :E 1ewnA 113 :N T0547 472 :PTRSASI 1ewnA 115 :TELRGRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=102930 # 1dmhA.470.144 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E470 (1dmhA)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T473 (1dmhA)L148 because D (zeta) conformation "forbidden" or filtered. T0547 471 :EP 1dmhA 146 :KP T0547 474 :RSASI 1dmhA 149 :PNAKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=102932 # 2bj0A.470.128 read from T0547.t06.many.frag # found chain 2bj0A in template set Warning: unaligning (T0547)T473 (2bj0A)G132 because S (epsilon) conformation "forbidden" or filtered. T0547 470 :EEP 2bj0A 129 :TEP T0547 474 :RSASI 2bj0A 133 :ATCRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=102934 # 1n4wA.470.362 read from T0547.t06.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)E470 because of BadResidue code BAD_PEPTIDE at template residue (1n4wA)G368 Warning: unaligning (T0547)E471 (1n4wA)L369 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1n4wA)W372 because T (delta_L) conformation "forbidden" or filtered. T0547 472 :PT 1n4wA 370 :ET T0547 475 :SASI 1n4wA 373 :VSLY Number of specific fragments extracted= 2 number of extra gaps= 2 total=102936 # 1nls.470.41 read from T0547.t06.many.frag # found chain 1nls in training set Warning: unaligning (T0547)E470 (1nls)M42 because P (beta_P) conformation "forbidden" or filtered. T0547 471 :EPTRSASI 1nls 43 :QNGKVGTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=102937 # 2akaA.470.454 read from T0547.t06.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)R474 (2akaA)Y448 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (2akaA)F449 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EEPT 2akaA 444 :ERKA T0547 476 :ASI 2akaA 450 :IGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=102939 # 1rx0A.470.217 read from T0547.t06.many.frag # found chain 1rx0A in training set T0547 470 :EEPTRSASI 1rx0A 218 :SQPTRAVIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=102940 # 1xv5A.470.263 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)T473 (1xv5A)N1266 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1xv5A)P1268 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1xv5A)A1269 because P (beta_P) conformation "forbidden" or filtered. T0547 470 :EEP 1xv5A 1263 :LAP T0547 474 :R 1xv5A 1267 :Q T0547 477 :SI 1xv5A 1270 :QI Number of specific fragments extracted= 3 number of extra gaps= 2 total=102943 # 1vh4A.470.147 read from T0547.t06.many.frag # found chain 1vh4A in training set Warning: unaligning (T0547)E470 (1vh4A)Q146 because P (beta_P) conformation "forbidden" or filtered. T0547 471 :EPTRSASI 1vh4A 147 :RPAKPLLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=102944 # 2cxvA.470.110 read from T0547.t06.many.frag # found chain 2cxvA in template set Warning: unaligning (T0547)T473 (2cxvA)N114 because L (left) conformation "forbidden" or filtered. T0547 470 :EEP 2cxvA 111 :RAL T0547 474 :RSASI 2cxvA 115 :RLATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=102946 # 1ds1A.470.288 read from T0547.t06.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)P472 (1ds1A)K291 because G (3-10) conformation "forbidden" or filtered. T0547 470 :EE 1ds1A 289 :DG T0547 473 :TRSASI 1ds1A 292 :DRWLHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=102948 # 1vp6A.470.49 read from T0547.t06.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)P472 (1vp6A)G269 because E (beta_S) conformation "forbidden" or filtered. T0547 470 :EE 1vp6A 267 :EP T0547 473 :TRSASI 1vp6A 270 :DRMFFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=102950 # 1gsoA.470.325 read from T0547.t06.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)P472 (1gsoA)W326 because E (beta_S) conformation "forbidden" or filtered. T0547 470 :EE 1gsoA 324 :SE T0547 473 :TRSASI 1gsoA 327 :DERASL Number of specific fragments extracted= 2 number of extra gaps= 1 total=102952 # 2bjfA.470.269 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)P472 (2bjfA)K272 because E (beta_S) conformation "forbidden" or filtered. T0547 470 :EE 2bjfA 270 :EE T0547 473 :TRSASI 2bjfA 273 :SDLTQY Number of specific fragments extracted= 2 number of extra gaps= 1 total=102954 # 1hq0A.470.247 read from T0547.t06.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)E471 (1hq0A)P968 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1hq0A)G971 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1hq0A)F972 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :E 1hq0A 967 :I T0547 472 :PT 1hq0A 969 :EH T0547 476 :ASI 1hq0A 973 :GTS Number of specific fragments extracted= 3 number of extra gaps= 2 total=102957 # 1jtgB.470.120 read from T0547.t06.many.frag # found chain 1jtgB in template set T0547 470 :EEPTRSASI 1jtgB 121 :STAGVTLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102958 # 1bob.470.208 read from T0547.t06.many.frag # found chain 1bob in template set Warning: unaligning (T0547)E470 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1bob)I209 Warning: unaligning (T0547)P472 (1bob)K211 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1bob)F213 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :E 1bob 210 :D T0547 473 :T 1bob 212 :K T0547 475 :SASI 1bob 214 :RAKI Number of specific fragments extracted= 3 number of extra gaps= 2 total=102961 # 1h2wA.470.270 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)R474 (1h2wA)G275 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EEPT 1h2wA 271 :NGIT T0547 475 :SASI 1h2wA 276 :ILKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=102963 # 1vlyA.470.282 read from T0547.t06.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)P472 (1vlyA)W273 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1vlyA)G277 because S (epsilon) conformation "forbidden" or filtered. T0547 470 :EE 1vlyA 271 :EN T0547 473 :TRS 1vlyA 274 :RRT T0547 477 :SI 1vlyA 278 :TV Number of specific fragments extracted= 3 number of extra gaps= 2 total=102966 # 1ykdA.470.316 read from T0547.t06.many.frag # found chain 1ykdA in template set Warning: unaligning (T0547)P472 (1ykdA)Q376 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1ykdA)G380 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EE 1ykdA 374 :GD T0547 473 :TRS 1ykdA 377 :ELI T0547 477 :SI 1ykdA 381 :VT Number of specific fragments extracted= 3 number of extra gaps= 2 total=102969 # 2f8lA.470.291 read from T0547.t06.many.frag # found chain 2f8lA in template set Warning: unaligning (T0547)E470 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2f8lA)Q282 Warning: unaligning (T0547)P472 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)Q282 Warning: unaligning (T0547)T473 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f8lA)A283 T0547 474 :RSASI 2f8lA 284 :RKSIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102970 # 1quqB.470.18 read from T0547.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0547)T473 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0547 470 :EEP 1quqB 19 :QFI T0547 474 :RSASI 1quqB 23 :KPVCF Number of specific fragments extracted= 2 number of extra gaps= 1 total=102972 # 2a13A.470.70 read from T0547.t06.many.frag # found chain 2a13A in training set Warning: unaligning (T0547)S477 (2a13A)E78 because Y (epsilon') conformation "forbidden" or filtered. T0547 470 :EEPTRSA 2a13A 71 :SGAPMHA T0547 478 :I 2a13A 79 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=102974 # 1qyrA.471.167 read from T0547.t06.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)S475 (1qyrA)D188 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (1qyrA)A190 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EPTR 1qyrA 184 :PPKV T0547 476 :A 1qyrA 189 :S T0547 478 :IW 1qyrA 191 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=102977 # 2b5gA.471.48 read from T0547.t06.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. T0547 471 :EPT 2b5gA 49 :HPF T0547 475 :SASIW 2b5gA 53 :HCLVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=102979 # 1dmhA.471.145 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E471 (1dmhA)K146 because E (beta_S) conformation "forbidden" or filtered. T0547 472 :PTRSASIW 1dmhA 147 :PLPNAKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=102980 # 1n4wA.471.363 read from T0547.t06.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)E471 (1n4wA)L369 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1n4wA)V373 because P (beta_P) conformation "forbidden" or filtered. T0547 472 :PTR 1n4wA 370 :ETW T0547 476 :ASIW 1n4wA 374 :SLYL Number of specific fragments extracted= 2 number of extra gaps= 2 total=102982 # 1ryoA.471.240 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)E471 (1ryoA)C241 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1ryoA)A244 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (1ryoA)P247 because P (beta_P) conformation "forbidden" or filtered. T0547 473 :T 1ryoA 243 :L T0547 475 :SA 1ryoA 245 :QV T0547 478 :IW 1ryoA 248 :SH Number of specific fragments extracted= 3 number of extra gaps= 3 total=102985 # 1pmhX.471.41 read from T0547.t06.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)P472 (1pmhX)G43 because T (delta_L) conformation "forbidden" or filtered. T0547 471 :E 1pmhX 42 :P T0547 473 :TRSASIW 1pmhX 44 :NKYALRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=102987 # 1nls.471.42 read from T0547.t06.many.frag # found chain 1nls in training set Warning: unaligning (T0547)T473 (1nls)G45 because T (delta_L) conformation "forbidden" or filtered. T0547 471 :EP 1nls 43 :QN T0547 474 :RSASIW 1nls 46 :KVGTAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=102989 # 1jc9A.471.149 read from T0547.t06.many.frag # found chain 1jc9A in template set Warning: unaligning (T0547)E471 (1jc9A)N150 because T (delta_L) conformation "forbidden" or filtered. T0547 472 :PTRSASIW 1jc9A 151 :DTRYAIYQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=102990 # 1pq7A.471.112 read from T0547.t06.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)T473 (1pq7A)G130 because T (delta_L) conformation "forbidden" or filtered. T0547 471 :EP 1pq7A 128 :VA T0547 474 :RSASIW 1pq7A 131 :SSATVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=102992 # 2exrA.471.307 read from T0547.t06.many.frag # found chain 2exrA in training set T0547 471 :EPTRSASIW 2exrA 308 :SCGSVLYCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=102993 # 1bc5A.471.201 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)S477 (1bc5A)P223 because C (cis) conformation "forbidden" or filtered. T0547 471 :EPTRSA 1bc5A 217 :QYNVPG T0547 478 :IW 1bc5A 224 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=102995 # 1vh4A.471.148 read from T0547.t06.many.frag # found chain 1vh4A in training set T0547 471 :EPTRSASIW 1vh4A 147 :RPAKPLLLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=102996 # 1gsoA.471.326 read from T0547.t06.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)E471 (1gsoA)E325 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1gsoA)W326 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :TRSASIW 1gsoA 327 :DERASLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=102997 # 1q7lA.471.68 read from T0547.t06.many.frag # found chain 1q7lA in training set Warning: unaligning (T0547)R474 (1q7lA)L72 because P (beta_P) conformation "forbidden" or filtered. T0547 471 :EPT 1q7lA 69 :NPT T0547 475 :SASIW 1q7lA 73 :SSILL Number of specific fragments extracted= 2 number of extra gaps= 1 total=102999 # 1pv5A.471.79 read from T0547.t06.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)E471 (1pv5A)Y77 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1pv5A)S80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1pv5A)G81 because S (epsilon) conformation "forbidden" or filtered. T0547 472 :PT 1pv5A 78 :PS T0547 476 :ASIW 1pv5A 82 :ILQF Number of specific fragments extracted= 2 number of extra gaps= 2 total=103001 # 1bob.471.209 read from T0547.t06.many.frag # found chain 1bob in template set Warning: unaligning (T0547)E471 (1bob)D210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (1bob)K211 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1bob)F213 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :T 1bob 212 :K T0547 475 :SASIW 1bob 214 :RAKIS Number of specific fragments extracted= 2 number of extra gaps= 2 total=103003 # 2bjfA.471.270 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)E471 (2bjfA)E271 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P472 (2bjfA)K272 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :TRSASIW 2bjfA 273 :SDLTQYT Number of specific fragments extracted= 1 number of extra gaps= 1 total=103004 # 1hq0A.471.248 read from T0547.t06.many.frag # found chain 1hq0A in template set Warning: unaligning (T0547)E471 (1hq0A)P968 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1hq0A)G971 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1hq0A)F972 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PT 1hq0A 969 :EH T0547 476 :ASIW 1hq0A 973 :GTSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=103006 # 1ykdA.471.317 read from T0547.t06.many.frag # found chain 1ykdA in template set Warning: unaligning (T0547)P472 (1ykdA)Q376 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1ykdA)G380 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1ykdA)L384 T0547 471 :E 1ykdA 375 :D T0547 473 :TRS 1ykdA 377 :ELI T0547 477 :SI 1ykdA 381 :VT Number of specific fragments extracted= 3 number of extra gaps= 3 total=103009 # 1xv5A.471.264 read from T0547.t06.many.frag # found chain 1xv5A in training set Warning: unaligning (T0547)T473 (1xv5A)N1266 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1xv5A)A1269 because P (beta_P) conformation "forbidden" or filtered. T0547 471 :EP 1xv5A 1264 :AP T0547 474 :RS 1xv5A 1267 :QP T0547 477 :SIW 1xv5A 1270 :QIL Number of specific fragments extracted= 3 number of extra gaps= 2 total=103012 # 1jtgB.471.121 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)T473 (1jtgB)G124 because T (delta_L) conformation "forbidden" or filtered. T0547 471 :EP 1jtgB 122 :TA T0547 474 :RSASIW 1jtgB 125 :VTLSLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=103014 # 1vlyA.471.283 read from T0547.t06.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)P472 (1vlyA)W273 because E (beta_S) conformation "forbidden" or filtered. T0547 471 :E 1vlyA 272 :N T0547 473 :TRSASIW 1vlyA 274 :RRTGTVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=103016 # 2akaA.471.455 read from T0547.t06.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)S475 (2akaA)F449 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (2akaA)I450 because E (beta_S) conformation "forbidden" or filtered. T0547 471 :EPTR 2akaA 445 :RKAY T0547 477 :SIW 2akaA 451 :GVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=103018 # 1qouA.471.83 read from T0547.t06.many.frag # found chain 1qouA in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1qouA)E83 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1qouA)E83 T0547 471 :EPTR 1qouA 78 :DPYL T0547 477 :SIW 1qouA 84 :HLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=103020 # 1ewnA.471.34 read from T0547.t06.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)W479 (1ewnA)V122 because G (3-10) conformation "forbidden" or filtered. T0547 471 :EPTRSASI 1ewnA 114 :GTELRGRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=103021 # 1ds1A.471.289 read from T0547.t06.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)P472 (1ds1A)K291 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1ds1A)W294 because D (zeta) conformation "forbidden" or filtered. T0547 471 :E 1ds1A 290 :G T0547 473 :TR 1ds1A 292 :DR T0547 476 :ASIW 1ds1A 295 :LHRV Number of specific fragments extracted= 3 number of extra gaps= 2 total=103024 # 1tovA.471.27 read from T0547.t06.many.frag # found chain 1tovA in training set Warning: unaligning (T0547)E471 (1tovA)Q159 because P (beta_P) conformation "forbidden" or filtered. T0547 472 :PTRSASIW 1tovA 160 :MARRGEVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=103025 # 1zpsA.471.71 read from T0547.t06.many.frag # found chain 1zpsA in training set T0547 471 :EPTRSASIW 1zpsA 72 :SSGHVQRVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=103026 # 1uasA.471.322 read from T0547.t06.many.frag # found chain 1uasA in training set T0547 471 :EPTRSASIW 1uasA 323 :AGSVAVTAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=103027 # 1xszA.471.269 read from T0547.t06.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)P472 (1xszA)T269 because G (3-10) conformation "forbidden" or filtered. T0547 471 :E 1xszA 268 :K T0547 473 :TRSASIW 1xszA 270 :SAQATIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=103029 # 1dmhA.472.146 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)R474 (1dmhA)P149 because P (beta_P) conformation "forbidden" or filtered. T0547 472 :PT 1dmhA 147 :PL T0547 475 :SASIWD 1dmhA 150 :NAKVEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=103031 # 1pq7A.472.113 read from T0547.t06.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)D480 (1pq7A)G137 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PTRSASIW 1pq7A 129 :AGSSATVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=103032 # 1qyrA.472.168 read from T0547.t06.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)A476 (1qyrA)S189 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1qyrA)R193 because E (beta_S) conformation "forbidden" or filtered. T0547 472 :PTRS 1qyrA 185 :PKVD T0547 477 :SIW 1qyrA 190 :AVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=103034 # 1gsoA.472.327 read from T0547.t06.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)P472 (1gsoA)W326 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :TRSASIWD 1gsoA 327 :DERASLGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=103035 # 1nls.472.43 read from T0547.t06.many.frag # found chain 1nls in training set Warning: unaligning (T0547)T473 (1nls)G45 because T (delta_L) conformation "forbidden" or filtered. T0547 472 :P 1nls 44 :N T0547 474 :RSASIWD 1nls 46 :KVGTAHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=103037 # 2b5gA.472.49 read from T0547.t06.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PT 2b5gA 50 :PF T0547 475 :SASIWD 2b5gA 53 :HCLVAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=103039 # 1vh4A.472.149 read from T0547.t06.many.frag # found chain 1vh4A in training set Warning: unaligning (T0547)D480 (1vh4A)H156 because E (beta_S) conformation "forbidden" or filtered. T0547 472 :PTRSASIW 1vh4A 148 :PAKPLLLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=103040 # 1pv5A.472.80 read from T0547.t06.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)R474 (1pv5A)S80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1pv5A)I82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (1pv5A)L83 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1pv5A)Y86 because E (beta_S) conformation "forbidden" or filtered. T0547 472 :PT 1pv5A 78 :PS T0547 475 :S 1pv5A 81 :G T0547 478 :IW 1pv5A 84 :QF Number of specific fragments extracted= 3 number of extra gaps= 3 total=103043 # 1vlyA.472.284 read from T0547.t06.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)P472 (1vlyA)W273 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1vlyA)G277 because S (epsilon) conformation "forbidden" or filtered. T0547 473 :TRS 1vlyA 274 :RRT T0547 477 :SIWD 1vlyA 278 :TVLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=103045 # 1pmhX.472.42 read from T0547.t06.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)P472 (1pmhX)G43 because T (delta_L) conformation "forbidden" or filtered. T0547 473 :TRSASIWD 1pmhX 44 :NKYALRLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=103046 # 1ryoA.472.241 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)P472 (1ryoA)H242 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :TRSASIWD 1ryoA 243 :LAQVPSHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=103047 # 2bjfA.472.271 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)P472 (2bjfA)K272 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :TRSASIWD 2bjfA 273 :SDLTQYTS Number of specific fragments extracted= 1 number of extra gaps= 1 total=103048 # 1bc5A.472.202 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)S477 (1bc5A)P223 because C (cis) conformation "forbidden" or filtered. T0547 472 :PTRSA 1bc5A 218 :YNVPG T0547 478 :IWD 1bc5A 224 :FDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=103050 # 1jc9A.472.150 read from T0547.t06.many.frag # found chain 1jc9A in template set T0547 472 :PTRSASIWD 1jc9A 151 :DTRYAIYQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=103051 # 2c5uA.472.172 read from T0547.t06.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)S475 (2c5uA)K175 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PTR 2c5uA 172 :QEM T0547 476 :ASIWD 2c5uA 176 :IILLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=103053 # 1n4wA.472.364 read from T0547.t06.many.frag # found chain 1n4wA in training set T0547 472 :PTRSASIWD 1n4wA 370 :ETWVSLYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=103054 # 1qouA.472.84 read from T0547.t06.many.frag # found chain 1qouA in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1qouA)E83 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1qouA)E83 Warning: unaligning (T0547)D480 (1qouA)W87 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PTR 1qouA 79 :PYL T0547 477 :SIW 1qouA 84 :HLH Number of specific fragments extracted= 2 number of extra gaps= 2 total=103056 # 1sr4C.472.58 read from T0547.t06.many.frag # found chain 1sr4C in template set Warning: unaligning (T0547)P472 (1sr4C)L79 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1sr4C)G82 because T (delta_L) conformation "forbidden" or filtered. T0547 473 :TR 1sr4C 80 :RD T0547 476 :ASIWD 1sr4C 83 :GTLVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=103058 # 1q7lA.472.69 read from T0547.t06.many.frag # found chain 1q7lA in training set Warning: unaligning (T0547)D480 (1q7lA)N78 because E (beta_S) conformation "forbidden" or filtered. T0547 472 :PTRSASIW 1q7lA 70 :PTLSSILL Number of specific fragments extracted= 1 number of extra gaps= 1 total=103059 # 1te0A.472.112 read from T0547.t06.many.frag # found chain 1te0A in template set T0547 472 :PTRSASIWD 1te0A 149 :PHIGDVVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=103060 # 1jtgB.472.122 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)D480 (1jtgB)C131 because E (beta_S) conformation "forbidden" or filtered. T0547 472 :PTRSASIW 1jtgB 123 :AGVTLSLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=103061 # 2exrA.472.308 read from T0547.t06.many.frag # found chain 2exrA in training set T0547 472 :PTRSASIWD 2exrA 309 :CGSVLYCLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103062 # 1bob.472.210 read from T0547.t06.many.frag # found chain 1bob in template set Warning: unaligning (T0547)P472 (1bob)K211 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)R474 (1bob)F213 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :T 1bob 212 :K T0547 475 :SASIWD 1bob 214 :RAKISQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=103064 # 1ykdA.472.318 read from T0547.t06.many.frag # found chain 1ykdA in template set Warning: unaligning (T0547)P472 (1ykdA)Q376 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1ykdA)L384 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1ykdA)L384 T0547 473 :TRSASI 1ykdA 377 :ELIGVT Number of specific fragments extracted= 1 number of extra gaps= 2 total=103065 # 2ar0A.472.372 read from T0547.t06.many.frag # found chain 2ar0A in template set T0547 472 :PTRSASIWD 2ar0A 373 :CTDDVWVYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=103066 # 2akaA.472.456 read from T0547.t06.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)R474 (2akaA)Y448 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (2akaA)F449 because Y (epsilon') conformation "forbidden" or filtered. T0547 472 :PT 2akaA 446 :KA T0547 476 :ASIWD 2akaA 450 :IGVLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=103068 # 1xszA.472.270 read from T0547.t06.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)P472 (1xszA)T269 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1xszA)V277 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :TRSASIW 1xszA 270 :SAQATIQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=103069 # 1y08A.472.243 read from T0547.t06.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)P472 (1y08A)I260 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1y08A)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :TRSASIW 1y08A 261 :NHVINLW Number of specific fragments extracted= 1 number of extra gaps= 2 total=103070 # 1si6X.472.124 read from T0547.t06.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)P472 (1si6X)Y125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1si6X)T133 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1si6X)T133 T0547 473 :TRSASI 1si6X 126 :NKRFSF Number of specific fragments extracted= 1 number of extra gaps= 2 total=103071 # 1vkdA.472.289 read from T0547.t06.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)P472 (1vkdA)V278 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1vkdA)V282 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1vkdA)V282 T0547 473 :TR 1vkdA 279 :PN T0547 477 :SIWD 1vkdA 283 :FPCA Number of specific fragments extracted= 2 number of extra gaps= 2 total=103073 # 1dmhA.473.147 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)A476 (1dmhA)A151 because P (beta_P) conformation "forbidden" or filtered. T0547 473 :TRS 1dmhA 148 :LPN T0547 477 :SIWDI 1dmhA 152 :KVEIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=103075 # 1vlyA.473.285 read from T0547.t06.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)R474 (1vlyA)R275 because P (beta_P) conformation "forbidden" or filtered. T0547 473 :T 1vlyA 274 :R T0547 475 :SASIWDI 1vlyA 276 :TGTVLAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=103077 # 2c5uA.473.173 read from T0547.t06.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)S475 (2c5uA)K175 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2c5uA)N180 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :TR 2c5uA 173 :EM T0547 476 :ASIW 2c5uA 176 :IILL T0547 481 :I 2c5uA 181 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=103080 # 1pq7A.473.114 read from T0547.t06.many.frag # found chain 1pq7A in training set T0547 473 :TRSASIWDI 1pq7A 130 :GSSATVAGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=103081 # 1nls.473.44 read from T0547.t06.many.frag # found chain 1nls in training set Warning: unaligning (T0547)T473 (1nls)G45 because T (delta_L) conformation "forbidden" or filtered. T0547 474 :RSASIWDI 1nls 46 :KVGTAHII Number of specific fragments extracted= 1 number of extra gaps= 1 total=103082 # 1bc5A.473.203 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)S477 (1bc5A)P223 because C (cis) conformation "forbidden" or filtered. T0547 473 :TRSA 1bc5A 219 :NVPG T0547 478 :IWDI 1bc5A 224 :FDAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=103084 # 1ryoA.473.242 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)R474 (1ryoA)A244 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :T 1ryoA 243 :L T0547 475 :SASIWDI 1ryoA 245 :QVPSHTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103086 # 1sr4C.473.59 read from T0547.t06.many.frag # found chain 1sr4C in template set Warning: unaligning (T0547)R474 (1sr4C)D81 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1sr4C)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1sr4C)V86 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :T 1sr4C 80 :R T0547 476 :ASI 1sr4C 83 :GTL T0547 480 :DI 1sr4C 87 :QF Number of specific fragments extracted= 3 number of extra gaps= 2 total=103089 # 1pmhX.473.43 read from T0547.t06.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)S477 (1pmhX)L48 because P (beta_P) conformation "forbidden" or filtered. T0547 473 :TRSA 1pmhX 44 :NKYA T0547 478 :IWDI 1pmhX 49 :RLDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103091 # 1te0A.473.113 read from T0547.t06.many.frag # found chain 1te0A in template set T0547 473 :TRSASIWDI 1te0A 150 :HIGDVVLAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=103092 # 2bjfA.473.272 read from T0547.t06.many.frag # found chain 2bjfA in training set T0547 473 :TRSASIWDI 2bjfA 273 :SDLTQYTSC Number of specific fragments extracted= 1 number of extra gaps= 0 total=103093 # 1vh4A.473.150 read from T0547.t06.many.frag # found chain 1vh4A in training set T0547 473 :TRSASIWDI 1vh4A 149 :AKPLLLMHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=103094 # 1qouA.473.85 read from T0547.t06.many.frag # found chain 1qouA in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1qouA)E83 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1qouA)E83 Warning: unaligning (T0547)D480 (1qouA)W87 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :TR 1qouA 80 :YL T0547 477 :SIW 1qouA 84 :HLH T0547 481 :I 1qouA 88 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=103097 # 1gsoA.473.328 read from T0547.t06.many.frag # found chain 1gsoA in training set Warning: unaligning (T0547)A476 (1gsoA)A330 because P (beta_P) conformation "forbidden" or filtered. T0547 473 :TRS 1gsoA 327 :DER T0547 477 :SIWDI 1gsoA 331 :SLGVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103099 # 1jc9A.473.151 read from T0547.t06.many.frag # found chain 1jc9A in template set T0547 473 :TRSASIWDI 1jc9A 152 :TRYAIYQDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=103100 # 1qyrA.473.169 read from T0547.t06.many.frag # found chain 1qyrA in template set Warning: unaligning (T0547)D480 (1qyrA)R193 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :TRSASIW 1qyrA 186 :KVDSAVV T0547 481 :I 1qyrA 194 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=103102 # 1pv5A.473.81 read from T0547.t06.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)R474 (1pv5A)S80 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :T 1pv5A 79 :S T0547 475 :SASIWDI 1pv5A 81 :GILQFYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=103104 # 1vkdA.473.290 read from T0547.t06.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)R474 (1vkdA)N280 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1vkdA)V282 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1vkdA)V282 T0547 473 :T 1vkdA 279 :P T0547 477 :SIWDI 1vkdA 283 :FPCAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=103106 # 1n4wA.473.365 read from T0547.t06.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)T473 (1n4wA)T371 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1n4wA)V373 because P (beta_P) conformation "forbidden" or filtered. T0547 474 :R 1n4wA 372 :W T0547 476 :ASIWDI 1n4wA 374 :SLYLAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=103108 # 1a8d.473.164 read from T0547.t06.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)T473 because of BadResidue code BAD_PEPTIDE in next template residue (1a8d)N166 Warning: unaligning (T0547)R474 because of BadResidue code BAD_PEPTIDE at template residue (1a8d)N166 T0547 475 :SASIWDI 1a8d 167 :KWVFITI Number of specific fragments extracted= 1 number of extra gaps= 1 total=103109 # 1bob.473.211 read from T0547.t06.many.frag # found chain 1bob in template set T0547 473 :TRSASIWDI 1bob 212 :KFRAKISQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=103110 # 1y08A.473.244 read from T0547.t06.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)D480 (1y08A)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :TRSASIW 1y08A 261 :NHVINLW T0547 481 :I 1y08A 269 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=103112 # 1svpA.473.131 read from T0547.t06.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)T473 (1svpA)G237 because T (delta_L) conformation "forbidden" or filtered. T0547 474 :RSASIWDI 1svpA 238 :TRTALSVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=103113 # 2akaA.473.457 read from T0547.t06.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)R474 (2akaA)Y448 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (2akaA)F449 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2akaA)D454 because E (beta_S) conformation "forbidden" or filtered. T0547 473 :T 2akaA 447 :A T0547 476 :ASIW 2akaA 450 :IGVL T0547 481 :I 2akaA 455 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=103116 # 1q7lA.473.70 read from T0547.t06.many.frag # found chain 1q7lA in training set Warning: unaligning (T0547)D480 (1q7lA)N78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I481 (1q7lA)S79 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :TRSASIW 1q7lA 71 :TLSSILL Number of specific fragments extracted= 1 number of extra gaps= 1 total=103117 # 2b5gA.473.50 read from T0547.t06.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)R474 (2b5gA)Y52 because Y (epsilon') conformation "forbidden" or filtered. T0547 473 :T 2b5gA 51 :F T0547 475 :SASIWDI 2b5gA 53 :HCLVAEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103119 # 2ar0A.473.373 read from T0547.t06.many.frag # found chain 2ar0A in template set T0547 473 :TRSASIWDI 2ar0A 374 :TDDVWVYDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=103120 # 1xszA.473.271 read from T0547.t06.many.frag # found chain 1xszA in training set T0547 473 :TRSASIWDI 1xszA 270 :SAQATIQVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=103121 # 1si6X.473.125 read from T0547.t06.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)T473 (1si6X)N126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (1si6X)R128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1si6X)T133 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1si6X)T133 T0547 474 :R 1si6X 127 :K T0547 476 :ASI 1si6X 129 :FSF T0547 481 :I 1si6X 134 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=103124 # 1jtgB.473.123 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)T473 (1jtgB)G124 because T (delta_L) conformation "forbidden" or filtered. T0547 474 :RSASIWDI 1jtgB 125 :VTLSLSCF Number of specific fragments extracted= 1 number of extra gaps= 1 total=103125 # 2c5uA.474.174 read from T0547.t06.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)R474 (2c5uA)M174 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 (2c5uA)K175 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2c5uA)N180 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIW 2c5uA 176 :IILL T0547 481 :IT 2c5uA 181 :VR Number of specific fragments extracted= 2 number of extra gaps= 2 total=103127 # 1vlyA.474.286 read from T0547.t06.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)A476 (1vlyA)G277 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1vlyA)A281 because Y (epsilon') conformation "forbidden" or filtered. T0547 474 :RS 1vlyA 275 :RT T0547 477 :SIW 1vlyA 278 :TVL T0547 481 :IT 1vlyA 282 :AV Number of specific fragments extracted= 3 number of extra gaps= 2 total=103130 # 1sr4C.474.60 read from T0547.t06.many.frag # found chain 1sr4C in template set Warning: unaligning (T0547)R474 (1sr4C)D81 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1sr4C)G83 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1sr4C)V86 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :S 1sr4C 82 :G T0547 477 :SI 1sr4C 84 :TL T0547 480 :DIT 1sr4C 87 :QFK Number of specific fragments extracted= 3 number of extra gaps= 3 total=103133 # 1pq7A.474.115 read from T0547.t06.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)I481 (1pq7A)W138 because G (3-10) conformation "forbidden" or filtered. T0547 474 :RSASIWD 1pq7A 131 :SSATVAG T0547 482 :T 1pq7A 139 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=103135 # 1ryoA.474.243 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)R474 (1ryoA)A244 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASIWDIT 1ryoA 245 :QVPSHTVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=103136 # 1a8d.474.165 read from T0547.t06.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)R474 because of BadResidue code BAD_PEPTIDE at template residue (1a8d)N166 T0547 475 :SASIWDIT 1a8d 167 :KWVFITIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=103137 # 1nls.474.45 read from T0547.t06.many.frag # found chain 1nls in training set Warning: unaligning (T0547)A476 (1nls)G48 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)T482 (1nls)Y54 because Y (epsilon') conformation "forbidden" or filtered. T0547 474 :RS 1nls 46 :KV T0547 477 :SIWDI 1nls 49 :TAHII Number of specific fragments extracted= 2 number of extra gaps= 2 total=103139 # 2bjfA.474.273 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)A476 (2bjfA)T276 because N (gamma') conformation "forbidden" or filtered. T0547 474 :RS 2bjfA 274 :DL T0547 477 :SIWDIT 2bjfA 277 :QYTSCM Number of specific fragments extracted= 2 number of extra gaps= 1 total=103141 # 1dmhA.474.148 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)R474 (1dmhA)P149 because P (beta_P) conformation "forbidden" or filtered. T0547 475 :SASIWDIT 1dmhA 150 :NAKVEIWH Number of specific fragments extracted= 1 number of extra gaps= 1 total=103142 # 1vkdA.474.291 read from T0547.t06.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)R474 (1vkdA)N280 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1vkdA)V282 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1vkdA)V282 Warning: unaligning (T0547)S477 (1vkdA)F283 because D (zeta) conformation "forbidden" or filtered. T0547 478 :IWDIT 1vkdA 284 :PCAAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=103143 # 1te0A.474.114 read from T0547.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)T482 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)N160 T0547 474 :RSASIWDI 1te0A 151 :IGDVVLAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=103144 # 1pmhX.474.44 read from T0547.t06.many.frag # found chain 1pmhX in training set T0547 474 :RSASIWDIT 1pmhX 45 :KYALRLDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103145 # 1qouA.474.86 read from T0547.t06.many.frag # found chain 1qouA in template set Warning: unaligning (T0547)R474 (1qouA)L81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1qouA)E83 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1qouA)E83 Warning: unaligning (T0547)D480 (1qouA)W87 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 1qouA 84 :HLH T0547 481 :IT 1qouA 88 :IV Number of specific fragments extracted= 2 number of extra gaps= 2 total=103147 # 1bc5A.474.204 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)S477 (1bc5A)P223 because C (cis) conformation "forbidden" or filtered. T0547 474 :RSA 1bc5A 220 :VPG T0547 478 :IWDIT 1bc5A 224 :FDAIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=103149 # 1jc9A.474.152 read from T0547.t06.many.frag # found chain 1jc9A in template set Warning: unaligning (T0547)W479 (1jc9A)Q158 because P (beta_P) conformation "forbidden" or filtered. T0547 474 :RSASI 1jc9A 153 :RYAIY T0547 480 :DIT 1jc9A 159 :DFW Number of specific fragments extracted= 2 number of extra gaps= 1 total=103151 # 1bob.474.212 read from T0547.t06.many.frag # found chain 1bob in template set Warning: unaligning (T0547)R474 (1bob)F213 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASIWDIT 1bob 214 :RAKISQFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=103152 # 1f60A.474.335 read from T0547.t06.many.frag # found chain 1f60A in training set T0547 474 :RSASIWDIT 1f60A 336 :ASFNATVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103153 # 1si6X.474.126 read from T0547.t06.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)S475 (1si6X)R128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1si6X)T133 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1si6X)T133 T0547 474 :R 1si6X 127 :K T0547 476 :ASI 1si6X 129 :FSF T0547 481 :IT 1si6X 134 :SR Number of specific fragments extracted= 3 number of extra gaps= 2 total=103156 # 2ar0A.474.374 read from T0547.t06.many.frag # found chain 2ar0A in template set Warning: unaligning (T0547)S477 (2ar0A)W378 because P (beta_P) conformation "forbidden" or filtered. T0547 474 :RSA 2ar0A 375 :DDV T0547 478 :IWDIT 2ar0A 379 :VYDLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=103158 # 1n4wA.474.366 read from T0547.t06.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)S475 (1n4wA)V373 because P (beta_P) conformation "forbidden" or filtered. T0547 474 :R 1n4wA 372 :W T0547 476 :ASIWDIT 1n4wA 374 :SLYLAIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=103160 # 1vh4A.474.151 read from T0547.t06.many.frag # found chain 1vh4A in training set T0547 474 :RSASIWDIT 1vh4A 150 :KPLLLMHIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=103161 # 1svpA.474.132 read from T0547.t06.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)D480 (1svpA)V244 because E (beta_S) conformation "forbidden" or filtered. T0547 474 :RSASIW 1svpA 238 :TRTALS T0547 481 :IT 1svpA 245 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=103163 # 2biwA.474.207 read from T0547.t06.many.frag # found chain 2biwA in template set T0547 474 :RSASIWDIT 2biwA 208 :LSSTLTLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103164 # 2b4wA.474.261 read from T0547.t06.many.frag # found chain 2b4wA in template set Warning: unaligning (T0547)R474 (2b4wA)D262 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2b4wA)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASIW 2b4wA 263 :CVFAS T0547 481 :IT 2b4wA 269 :IV Number of specific fragments extracted= 2 number of extra gaps= 2 total=103166 # 1zpsA.474.74 read from T0547.t06.many.frag # found chain 1zpsA in training set T0547 474 :RSASIWDIT 1zpsA 75 :HVQRVKDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=103167 # 1y08A.474.245 read from T0547.t06.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)D480 (1y08A)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 474 :RSASIW 1y08A 262 :HVINLW T0547 481 :IT 1y08A 269 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=103169 # 1pv5A.474.82 read from T0547.t06.many.frag # found chain 1pv5A in training set Warning: unaligning (T0547)R474 (1pv5A)S80 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASIWDIT 1pv5A 81 :GILQFYIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=103170 # 2akaA.474.458 read from T0547.t06.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)R474 (2akaA)Y448 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASIWDIT 2akaA 449 :FIGVLDIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=103171 # 1dzkA.474.13 read from T0547.t06.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)R474 (1dzkA)G14 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1dzkA)Y20 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASIW 1dzkA 15 :KWITS T0547 481 :IT 1dzkA 21 :IG Number of specific fragments extracted= 2 number of extra gaps= 2 total=103173 # 1ykdA.474.320 read from T0547.t06.many.frag # found chain 1ykdA in template set Warning: unaligning (T0547)A476 (1ykdA)G380 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1ykdA)L384 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1ykdA)L384 T0547 474 :RS 1ykdA 378 :LI T0547 477 :SI 1ykdA 381 :VT T0547 481 :IT 1ykdA 385 :VN Number of specific fragments extracted= 3 number of extra gaps= 2 total=103176 # 2c5uA.475.175 read from T0547.t06.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)D480 (2c5uA)N180 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASIW 2c5uA 175 :KIILL T0547 481 :ITC 2c5uA 181 :VRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=103178 # 1a8d.475.166 read from T0547.t06.many.frag # found chain 1a8d in training set T0547 475 :SASIWDITC 1a8d 167 :KWVFITITN Number of specific fragments extracted= 1 number of extra gaps= 0 total=103179 # 1vlyA.475.287 read from T0547.t06.many.frag # found chain 1vlyA in training set T0547 475 :SASIWDITC 1vlyA 276 :TGTVLAAVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=103180 # 1pq7A.475.116 read from T0547.t06.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)I481 (1pq7A)W138 because G (3-10) conformation "forbidden" or filtered. T0547 475 :SASIWD 1pq7A 132 :SATVAG T0547 482 :TC 1pq7A 139 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=103182 # 1sr4C.475.61 read from T0547.t06.many.frag # found chain 1sr4C in template set Warning: unaligning (T0547)S475 (1sr4C)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (1sr4C)V86 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASI 1sr4C 83 :GTL T0547 480 :DITC 1sr4C 87 :QFKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=103184 # 2bjfA.475.274 read from T0547.t06.many.frag # found chain 2bjfA in training set T0547 475 :SASIWDITC 2bjfA 275 :LTQYTSCMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=103185 # 1vkdA.475.292 read from T0547.t06.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1vkdA)V282 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1vkdA)V282 Warning: unaligning (T0547)D480 (1vkdA)A286 because E (beta_S) conformation "forbidden" or filtered. T0547 477 :SIW 1vkdA 283 :FPC T0547 481 :ITC 1vkdA 287 :ALC Number of specific fragments extracted= 2 number of extra gaps= 2 total=103187 # 1nls.475.46 read from T0547.t06.many.frag # found chain 1nls in training set Warning: unaligning (T0547)D480 (1nls)I52 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASIW 1nls 47 :VGTAH T0547 481 :ITC 1nls 53 :IYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=103189 # 1ryoA.475.244 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)W479 (1ryoA)H249 because P (beta_P) conformation "forbidden" or filtered. T0547 475 :SASI 1ryoA 245 :QVPS T0547 480 :DITC 1ryoA 250 :TVVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=103191 # 1te0A.475.115 read from T0547.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)T482 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)N160 Warning: unaligning (T0547)C483 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)N160 T0547 475 :SASIWDI 1te0A 152 :GDVVLAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=103192 # 1dmhA.475.149 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)D480 (1dmhA)I155 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASIW 1dmhA 150 :NAKVE T0547 481 :ITC 1dmhA 156 :WHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=103194 # 1f60A.475.336 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)D480 (1f60A)V342 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASIW 1f60A 337 :SFNAT T0547 481 :ITC 1f60A 343 :IVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=103196 # 1bob.475.213 read from T0547.t06.many.frag # found chain 1bob in template set Warning: unaligning (T0547)D480 (1bob)Q219 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASIW 1bob 214 :RAKIS T0547 481 :ITC 1bob 220 :FLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=103198 # 2b4wA.475.262 read from T0547.t06.many.frag # found chain 2b4wA in template set T0547 475 :SASIWDITC 2b4wA 263 :CVFASGIVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=103199 # 1qouA.475.87 read from T0547.t06.many.frag # found chain 1qouA in template set Warning: unaligning (T0547)S475 because of BadResidue code BAD_PEPTIDE in next template residue (1qouA)E83 Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1qouA)E83 Warning: unaligning (T0547)D480 (1qouA)W87 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 1qouA 84 :HLH T0547 481 :ITC 1qouA 88 :IVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=103201 # 1jc9A.475.153 read from T0547.t06.many.frag # found chain 1jc9A in template set T0547 475 :SASIWDITC 1jc9A 154 :YAIYQDFWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=103202 # 1pmhX.475.45 read from T0547.t06.many.frag # found chain 1pmhX in training set T0547 475 :SASIWDITC 1pmhX 46 :YALRLDVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=103203 # 1zpsA.475.75 read from T0547.t06.many.frag # found chain 1zpsA in training set Warning: unaligning (T0547)D480 (1zpsA)D81 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASIW 1zpsA 76 :VQRVK T0547 481 :ITC 1zpsA 82 :VLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103205 # 1svpA.475.133 read from T0547.t06.many.frag # found chain 1svpA in template set T0547 475 :SASIWDITC 1svpA 239 :RTALSVVTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=103206 # 1si6X.475.127 read from T0547.t06.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)S475 (1si6X)R128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (1si6X)F129 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1si6X)T133 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1si6X)T133 Warning: unaligning (T0547)I481 (1si6X)S134 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SI 1si6X 130 :SF T0547 482 :TC 1si6X 135 :RM Number of specific fragments extracted= 2 number of extra gaps= 2 total=103208 # 1bc5A.475.205 read from T0547.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0547)A476 (1bc5A)G222 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (1bc5A)P223 because C (cis) conformation "forbidden" or filtered. T0547 475 :S 1bc5A 221 :P T0547 478 :IWDITC 1bc5A 224 :FDAIFC Number of specific fragments extracted= 2 number of extra gaps= 1 total=103210 # 2biwA.475.208 read from T0547.t06.many.frag # found chain 2biwA in template set T0547 475 :SASIWDITC 2biwA 209 :SSTLTLLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=103211 # 1at0.475.51 read from T0547.t06.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)D480 (1at0)Q314 because E (beta_S) conformation "forbidden" or filtered. T0547 475 :SASIW 1at0 309 :MQNFV T0547 481 :ITC 1at0 315 :LHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=103213 # 1mfmA.475.80 read from T0547.t06.many.frag # found chain 1mfmA in training set Warning: unaligning (T0547)W479 (1mfmA)G85 because S (epsilon) conformation "forbidden" or filtered. T0547 475 :SASI 1mfmA 81 :VGDL T0547 480 :DITC 1mfmA 86 :NVTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=103215 # 2akaA.475.459 read from T0547.t06.many.frag # found chain 2akaA in template set T0547 475 :SASIWDITC 2akaA 449 :FIGVLDISG Number of specific fragments extracted= 1 number of extra gaps= 0 total=103216 # 1pjxA.475.224 read from T0547.t06.many.frag # found chain 1pjxA in training set Warning: unaligning (T0547)S477 (1pjxA)G227 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SA 1pjxA 225 :EG T0547 478 :IWDITC 1pjxA 228 :ADGMDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=103218 # 1dzkA.475.14 read from T0547.t06.many.frag # found chain 1dzkA in training set T0547 475 :SASIWDITC 1dzkA 15 :KWITSYIGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=103219 # 1n4wA.475.367 read from T0547.t06.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)D480 (1n4wA)A378 because P (beta_P) conformation "forbidden" or filtered. T0547 475 :SASIW 1n4wA 373 :VSLYL T0547 481 :ITC 1n4wA 379 :ITK Number of specific fragments extracted= 2 number of extra gaps= 1 total=103221 # 1pguA.475.115 read from T0547.t06.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)D480 (1pguA)D121 because Y (epsilon') conformation "forbidden" or filtered. T0547 475 :SASIW 1pguA 116 :AGPIS T0547 481 :ITC 1pguA 122 :ISW Number of specific fragments extracted= 2 number of extra gaps= 1 total=103223 # 2arcA.475.83 read from T0547.t06.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)S475 (2arcA)E90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A476 (2arcA)W91 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2arcA)W95 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 2arcA 92 :YHQ T0547 481 :ITC 2arcA 96 :VYF Number of specific fragments extracted= 2 number of extra gaps= 2 total=103225 # 2c5uA.476.176 read from T0547.t06.many.frag # found chain 2c5uA in template set T0547 476 :ASIWDITCD 2c5uA 176 :IILLNVREN Number of specific fragments extracted= 1 number of extra gaps= 0 total=103226 # 1a8d.476.167 read from T0547.t06.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)A476 (1a8d)W168 because P (beta_P) conformation "forbidden" or filtered. T0547 477 :SIWDITCD 1a8d 169 :VFITITND Number of specific fragments extracted= 1 number of extra gaps= 1 total=103227 # 1vlyA.476.288 read from T0547.t06.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)D480 (1vlyA)A281 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIW 1vlyA 277 :GTVL T0547 481 :ITCD 1vlyA 282 :AVKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=103229 # 1sr4C.476.62 read from T0547.t06.many.frag # found chain 1sr4C in template set Warning: unaligning (T0547)W479 (1sr4C)V86 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASI 1sr4C 83 :GTL T0547 480 :DITCD 1sr4C 87 :QFKVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103231 # 1pq7A.476.117 read from T0547.t06.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)D480 (1pq7A)G137 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIW 1pq7A 133 :ATVA T0547 481 :ITCD 1pq7A 138 :WGAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=103233 # 1vkdA.476.293 read from T0547.t06.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1vkdA)V282 T0547 477 :SIWDITCD 1vkdA 283 :FPCAALCD Number of specific fragments extracted= 1 number of extra gaps= 1 total=103234 # 1nls.476.47 read from T0547.t06.many.frag # found chain 1nls in training set T0547 476 :ASIWDITCD 1nls 48 :GTAHIIYNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=103235 # 2b4wA.476.263 read from T0547.t06.many.frag # found chain 2b4wA in template set Warning: unaligning (T0547)D480 (2b4wA)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIW 2b4wA 264 :VFAS T0547 481 :ITCD 2b4wA 269 :IVMR Number of specific fragments extracted= 2 number of extra gaps= 1 total=103237 # 2bjfA.476.275 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)A476 (2bjfA)T276 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)I478 (2bjfA)Y278 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :S 2bjfA 277 :Q T0547 479 :WDITCD 2bjfA 279 :TSCMCL Number of specific fragments extracted= 2 number of extra gaps= 2 total=103239 # 1svpA.476.134 read from T0547.t06.many.frag # found chain 1svpA in template set T0547 476 :ASIWDITCD 1svpA 240 :TALSVVTWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=103240 # 1f60A.476.337 read from T0547.t06.many.frag # found chain 1f60A in training set T0547 476 :ASIWDITCD 1f60A 338 :FNATVIVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=103241 # 2biwA.476.209 read from T0547.t06.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)D480 (2biwA)L214 because E (beta_S) conformation "forbidden" or filtered. T0547 476 :ASIW 2biwA 210 :STLT T0547 481 :ITCD 2biwA 215 :LELD Number of specific fragments extracted= 2 number of extra gaps= 1 total=103243 # 1zpsA.476.76 read from T0547.t06.many.frag # found chain 1zpsA in training set Warning: unaligning (T0547)A476 (1zpsA)Q77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S477 (1zpsA)R78 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1zpsA)D81 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IW 1zpsA 79 :VK T0547 481 :ITCD 1zpsA 82 :VLVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=103245 # 1ryoA.476.245 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)A476 (1ryoA)V246 because E (beta_S) conformation "forbidden" or filtered. T0547 477 :SIWDITCD 1ryoA 247 :PSHTVVAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=103246 # 1dmhA.476.150 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)D484 (1dmhA)N159 because P (beta_P) conformation "forbidden" or filtered. T0547 476 :ASIWDITC 1dmhA 151 :AKVEIWHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=103247 # 1mfmA.476.81 read from T0547.t06.many.frag # found chain 1mfmA in training set T0547 476 :ASIWDITCD 1mfmA 82 :GDLGNVTAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=103248 # 1pguA.476.116 read from T0547.t06.many.frag # found chain 1pguA in template set T0547 476 :ASIWDITCD 1pguA 117 :GPISDISWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=103249 # 1te0A.476.116 read from T0547.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)A476 (1te0A)D153 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)T482 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)N160 Warning: unaligning (T0547)C483 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)N160 Warning: unaligning (T0547)D484 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)Y162 T0547 477 :SIWDI 1te0A 154 :VVLAI Number of specific fragments extracted= 1 number of extra gaps= 2 total=103250 # 1si6X.476.128 read from T0547.t06.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1si6X)T133 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1si6X)T133 Warning: unaligning (T0547)I481 (1si6X)S134 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASI 1si6X 129 :FSF T0547 482 :TCD 1si6X 135 :RMS Number of specific fragments extracted= 2 number of extra gaps= 1 total=103252 # 1jc9A.476.154 read from T0547.t06.many.frag # found chain 1jc9A in template set T0547 476 :ASIWDITCD 1jc9A 155 :AIYQDFWIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103253 # 1dzkA.476.15 read from T0547.t06.many.frag # found chain 1dzkA in training set T0547 476 :ASIWDITCD 1dzkA 16 :WITSYIGSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=103254 # 1bob.476.214 read from T0547.t06.many.frag # found chain 1bob in template set T0547 476 :ASIWDITCD 1bob 215 :AKISQFLIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=103255 # 1qouA.476.88 read from T0547.t06.many.frag # found chain 1qouA in template set Warning: unaligning (T0547)A476 because of BadResidue code BAD_PEPTIDE at template residue (1qouA)E83 Warning: unaligning (T0547)D480 (1qouA)W87 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 1qouA 84 :HLH T0547 481 :ITCD 1qouA 88 :IVTD Number of specific fragments extracted= 2 number of extra gaps= 2 total=103257 # 1pjxA.476.225 read from T0547.t06.many.frag # found chain 1pjxA in training set T0547 476 :ASIWDITCD 1pjxA 226 :GGADGMDFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=103258 # 1at0.476.52 read from T0547.t06.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)S477 (1at0)N311 because P (beta_P) conformation "forbidden" or filtered. T0547 476 :A 1at0 310 :Q T0547 478 :IWDITCD 1at0 312 :FVQLHTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=103260 # 1y08A.476.247 read from T0547.t06.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)D480 (1y08A)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIW 1y08A 264 :INLW T0547 481 :ITCD 1y08A 269 :ADFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=103262 # 2arcA.476.84 read from T0547.t06.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)A476 (2arcA)W91 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)W479 (2arcA)Q94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (2arcA)W95 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SI 2arcA 92 :YH T0547 481 :ITCD 2arcA 96 :VYFR Number of specific fragments extracted= 2 number of extra gaps= 2 total=103264 # 1n4wA.476.368 read from T0547.t06.many.frag # found chain 1n4wA in training set Warning: unaligning (T0547)W479 (1n4wA)L377 because D (zeta) conformation "forbidden" or filtered. T0547 476 :ASI 1n4wA 374 :SLY T0547 480 :DITCD 1n4wA 378 :AITKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=103266 # 1xszA.476.274 read from T0547.t06.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)D484 (1xszA)N281 because Y (epsilon') conformation "forbidden" or filtered. T0547 476 :ASIWDITC 1xszA 273 :ATIQVYTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=103267 # 1pmhX.476.46 read from T0547.t06.many.frag # found chain 1pmhX in training set T0547 476 :ASIWDITCD 1pmhX 47 :ALRLDVEFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=103268 # 1a8d.477.168 read from T0547.t06.many.frag # found chain 1a8d in training set T0547 477 :SIWDITCDS 1a8d 169 :VFITITNDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=103269 # 2c5uA.477.177 read from T0547.t06.many.frag # found chain 2c5uA in template set T0547 477 :SIWDITCDS 2c5uA 177 :ILLNVRENE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103270 # 1vlyA.477.289 read from T0547.t06.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)D484 (1vlyA)L285 because P (beta_P) conformation "forbidden" or filtered. T0547 477 :SIWDITC 1vlyA 278 :TVLAAVK T0547 485 :S 1vlyA 286 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=103272 # 1vkdA.477.294 read from T0547.t06.many.frag # found chain 1vkdA in template set T0547 477 :SIWDITCDS 1vkdA 283 :FPCAALCDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=103273 # 2b4wA.477.264 read from T0547.t06.many.frag # found chain 2b4wA in template set Warning: unaligning (T0547)D480 (2b4wA)G268 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (2b4wA)R272 because E (beta_S) conformation "forbidden" or filtered. T0547 477 :SIW 2b4wA 265 :FAS T0547 481 :ITC 2b4wA 269 :IVM T0547 485 :S 2b4wA 273 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=103276 # 1svpA.477.135 read from T0547.t06.many.frag # found chain 1svpA in template set T0547 477 :SIWDITCDS 1svpA 241 :ALSVVTWNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=103277 # 1f60A.477.338 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)S485 (1f60A)H347 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIWDITCD 1f60A 339 :NATVIVLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=103278 # 1nls.477.48 read from T0547.t06.many.frag # found chain 1nls in training set Warning: unaligning (T0547)T482 (1nls)Y54 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIWDI 1nls 49 :TAHII T0547 483 :CDS 1nls 55 :NSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103280 # 1pq7A.477.118 read from T0547.t06.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)D480 (1pq7A)G137 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 1pq7A 134 :TVA T0547 481 :ITCDS 1pq7A 138 :WGATS Number of specific fragments extracted= 2 number of extra gaps= 1 total=103282 # 2bjfA.477.276 read from T0547.t06.many.frag # found chain 2bjfA in training set T0547 477 :SIWDITCDS 2bjfA 277 :QYTSCMCLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103283 # 1sr4C.477.63 read from T0547.t06.many.frag # found chain 1sr4C in template set Warning: unaligning (T0547)W479 (1sr4C)V86 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SI 1sr4C 84 :TL T0547 480 :DITCDS 1sr4C 87 :QFKVVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=103285 # 2biwA.477.210 read from T0547.t06.many.frag # found chain 2biwA in template set T0547 477 :SIWDITCDS 2biwA 211 :TLTLLELDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=103286 # 1zpsA.477.77 read from T0547.t06.many.frag # found chain 1zpsA in training set Warning: unaligning (T0547)D480 (1zpsA)D81 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 1zpsA 78 :RVK T0547 481 :ITCDS 1zpsA 82 :VLVDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=103288 # 1mfmA.477.82 read from T0547.t06.many.frag # found chain 1mfmA in training set T0547 477 :SIWDITCDS 1mfmA 83 :DLGNVTADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=103289 # 1pguA.477.117 read from T0547.t06.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)D480 (1pguA)D121 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 1pguA 118 :PIS T0547 481 :ITCDS 1pguA 122 :ISWDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=103291 # 1y08A.477.248 read from T0547.t06.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)D480 (1y08A)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 1y08A 265 :NLW T0547 481 :ITCDS 1y08A 269 :ADFDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=103293 # 1te0A.477.117 read from T0547.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)T482 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)N160 Warning: unaligning (T0547)C483 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)N160 Warning: unaligning (T0547)D484 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)Y162 Warning: unaligning (T0547)S485 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)Y162 T0547 477 :SIWDI 1te0A 154 :VVLAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=103294 # 1ryoA.477.246 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)D480 (1ryoA)T250 because E (beta_S) conformation "forbidden" or filtered. T0547 477 :SIW 1ryoA 247 :PSH T0547 481 :ITCDS 1ryoA 251 :VVARS Number of specific fragments extracted= 2 number of extra gaps= 1 total=103296 # 1rp0A.477.180 read from T0547.t06.many.frag # found chain 1rp0A in training set T0547 477 :SIWDITCDS 1rp0A 181 :KIVVSSCGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=103297 # 1dmhA.477.151 read from T0547.t06.many.frag # found chain 1dmhA in training set T0547 477 :SIWDITCDS 1dmhA 152 :KVEIWHANT Number of specific fragments extracted= 1 number of extra gaps= 0 total=103298 # 1si6X.477.129 read from T0547.t06.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1si6X)T133 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1si6X)T133 T0547 477 :SI 1si6X 130 :SF T0547 481 :ITCDS 1si6X 134 :SRMSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=103300 # 1pjxA.477.226 read from T0547.t06.many.frag # found chain 1pjxA in training set T0547 477 :SIWDITCDS 1pjxA 227 :GADGMDFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103301 # 1nlqA.477.32 read from T0547.t06.many.frag # found chain 1nlqA in training set T0547 477 :SIWDITCDS 1nlqA 33 :VIKQILLGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=103302 # 1jc9A.477.155 read from T0547.t06.many.frag # found chain 1jc9A in template set Warning: unaligning (T0547)D484 (1jc9A)E163 because P (beta_P) conformation "forbidden" or filtered. T0547 477 :SIWDITC 1jc9A 156 :IYQDFWI T0547 485 :S 1jc9A 164 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=103304 # 1dzkA.477.16 read from T0547.t06.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)D480 (1dzkA)Y20 because E (beta_S) conformation "forbidden" or filtered. T0547 477 :SIW 1dzkA 17 :ITS T0547 481 :ITCDS 1dzkA 21 :IGSSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=103306 # 1n4wA.477.369 read from T0547.t06.many.frag # found chain 1n4wA in training set T0547 477 :SIWDITCDS 1n4wA 375 :LYLAITKNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=103307 # 1ykdA.477.323 read from T0547.t06.many.frag # found chain 1ykdA in template set Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1ykdA)L384 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1ykdA)L384 Warning: unaligning (T0547)T482 (1ykdA)N386 because L (left) conformation "forbidden" or filtered. T0547 477 :SI 1ykdA 381 :VT T0547 481 :I 1ykdA 385 :V T0547 483 :CDS 1ykdA 387 :KKK Number of specific fragments extracted= 3 number of extra gaps= 2 total=103310 # 1w0pA.477.404 read from T0547.t06.many.frag # found chain 1w0pA in training set T0547 477 :SIWDITCDS 1w0pA 405 :YVVTLSIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103311 # 2arcA.477.85 read from T0547.t06.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)S485 (2arcA)P100 because P (beta_P) conformation "forbidden" or filtered. T0547 477 :SIWDITCD 2arcA 92 :YHQWVYFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=103312 # 1bdo.477.57 read from T0547.t06.many.frag # found chain 1bdo in training set Warning: unaligning (T0547)D480 (1bdo)A137 because Y (epsilon') conformation "forbidden" or filtered. T0547 477 :SIW 1bdo 134 :TVK T0547 481 :ITCDS 1bdo 138 :ILVES Number of specific fragments extracted= 2 number of extra gaps= 1 total=103314 # 1a8d.478.169 read from T0547.t06.many.frag # found chain 1a8d in training set T0547 478 :IWDITCDSD 1a8d 170 :FITITNDRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=103315 # 1svpA.478.136 read from T0547.t06.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)D484 (1svpA)N248 because P (beta_P) conformation "forbidden" or filtered. T0547 478 :IWDITC 1svpA 242 :LSVVTW T0547 485 :SD 1svpA 249 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=103317 # 2c5uA.478.178 read from T0547.t06.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)D480 (2c5uA)N180 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IW 2c5uA 178 :LL T0547 481 :ITCDSD 2c5uA 181 :VRENET Number of specific fragments extracted= 2 number of extra gaps= 1 total=103319 # 1vlyA.478.290 read from T0547.t06.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)D480 (1vlyA)A281 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IW 1vlyA 279 :VL T0547 481 :ITCDSD 1vlyA 282 :AVKLED Number of specific fragments extracted= 2 number of extra gaps= 1 total=103321 # 1vkdA.478.295 read from T0547.t06.many.frag # found chain 1vkdA in template set T0547 478 :IWDITCDSD 1vkdA 284 :PCAALCDAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=103322 # 2b4wA.478.265 read from T0547.t06.many.frag # found chain 2b4wA in template set T0547 478 :IWDITCDSD 2b4wA 266 :ASGIVMRSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=103323 # 1f60A.478.339 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)D484 (1f60A)N346 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S485 (1f60A)H347 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IWDITC 1f60A 340 :ATVIVL T0547 486 :D 1f60A 348 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=103325 # 2bjfA.478.277 read from T0547.t06.many.frag # found chain 2bjfA in training set T0547 478 :IWDITCDSD 2bjfA 278 :YTSCMCLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=103326 # 1nls.478.49 read from T0547.t06.many.frag # found chain 1nls in training set T0547 478 :IWDITCDSD 1nls 50 :AHIIYNSVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=103327 # 1w0pA.478.405 read from T0547.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)T482 (1w0pA)S410 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IWDI 1w0pA 406 :VVTL T0547 483 :CDSD 1w0pA 411 :IDES Number of specific fragments extracted= 2 number of extra gaps= 1 total=103329 # 2biwA.478.211 read from T0547.t06.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)D480 (2biwA)L214 because E (beta_S) conformation "forbidden" or filtered. T0547 478 :IW 2biwA 212 :LT T0547 481 :ITCDSD 2biwA 215 :LELDPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=103331 # 1xksA.478.164 read from T0547.t06.many.frag # found chain 1xksA in template set T0547 478 :IWDITCDSD 1xksA 229 :LIRLIPESS Number of specific fragments extracted= 1 number of extra gaps= 0 total=103332 # 1pguA.478.118 read from T0547.t06.many.frag # found chain 1pguA in template set T0547 478 :IWDITCDSD 1pguA 119 :ISDISWDFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103333 # 1pq7A.478.119 read from T0547.t06.many.frag # found chain 1pq7A in training set T0547 478 :IWDITCDSD 1pq7A 135 :VAGWGATSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103334 # 1y08A.478.249 read from T0547.t06.many.frag # found chain 1y08A in template set T0547 478 :IWDITCDSD 1y08A 266 :LWGADFDSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=103335 # 1rp0A.478.181 read from T0547.t06.many.frag # found chain 1rp0A in training set T0547 478 :IWDITCDSD 1rp0A 182 :IVVSSCGHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=103336 # 1ryoA.478.247 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)C483 (1ryoA)A253 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IWDIT 1ryoA 248 :SHTVV T0547 484 :DSD 1ryoA 254 :RSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=103338 # 1mfmA.478.83 read from T0547.t06.many.frag # found chain 1mfmA in training set T0547 478 :IWDITCDSD 1mfmA 84 :LGNVTADKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=103339 # 1sr4C.478.64 read from T0547.t06.many.frag # found chain 1sr4C in template set Warning: unaligning (T0547)W479 (1sr4C)V86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1sr4C)Q87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S485 (1sr4C)G92 because T (delta_L) conformation "forbidden" or filtered. T0547 478 :I 1sr4C 85 :L T0547 481 :ITCD 1sr4C 88 :FKVV T0547 486 :D 1sr4C 93 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=103342 # 1ykdA.478.324 read from T0547.t06.many.frag # found chain 1ykdA in template set Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1ykdA)L384 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1ykdA)L384 Warning: unaligning (T0547)T482 (1ykdA)N386 because L (left) conformation "forbidden" or filtered. T0547 478 :I 1ykdA 382 :T T0547 481 :I 1ykdA 385 :V T0547 483 :CDSD 1ykdA 387 :KKKT Number of specific fragments extracted= 3 number of extra gaps= 2 total=103345 # 1rq2A.478.260 read from T0547.t06.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)D484 (1rq2A)G264 because P (beta_P) conformation "forbidden" or filtered. T0547 478 :IWDITC 1rq2A 258 :LMSIAG T0547 485 :SD 1rq2A 265 :SD Number of specific fragments extracted= 2 number of extra gaps= 1 total=103347 # 1si6X.478.130 read from T0547.t06.many.frag # found chain 1si6X in training set Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1si6X)T133 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1si6X)T133 Warning: unaligning (T0547)D484 (1si6X)S137 because P (beta_P) conformation "forbidden" or filtered. T0547 478 :I 1si6X 131 :F T0547 481 :ITC 1si6X 134 :SRM T0547 485 :SD 1si6X 138 :DE Number of specific fragments extracted= 3 number of extra gaps= 2 total=103350 # 1odmA.478.282 read from T0547.t06.many.frag # found chain 1odmA in training set T0547 478 :IWDITCDSD 1odmA 283 :PFFVNLGYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=103351 # 1pjxA.478.227 read from T0547.t06.many.frag # found chain 1pjxA in training set T0547 478 :IWDITCDSD 1pjxA 228 :ADGMDFDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=103352 # 1dmhA.478.152 read from T0547.t06.many.frag # found chain 1dmhA in training set T0547 478 :IWDITCDSD 1dmhA 153 :VEIWHANTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=103353 # 1dyoA.478.89 read from T0547.t06.many.frag # found chain 1dyoA in template set Warning: unaligning (T0547)W479 (1dyoA)K91 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :I 1dyoA 90 :M T0547 480 :DITCDSD 1dyoA 92 :LQYVDGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=103355 # 1dzkA.478.17 read from T0547.t06.many.frag # found chain 1dzkA in training set T0547 478 :IWDITCDSD 1dzkA 18 :TSYIGSSDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=103356 # 1te0A.478.118 read from T0547.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0547)T482 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)N160 Warning: unaligning (T0547)C483 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)N160 Warning: unaligning (T0547)D484 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1te0A)Y162 Warning: unaligning (T0547)S485 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)Y162 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1te0A)N163 T0547 478 :IWDI 1te0A 155 :VLAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=103357 # 1h2wA.478.278 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)D484 (1h2wA)N285 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IWDITC 1h2wA 279 :WVKLID T0547 485 :SD 1h2wA 286 :FE Number of specific fragments extracted= 2 number of extra gaps= 1 total=103359 # 2arcA.478.86 read from T0547.t06.many.frag # found chain 2arcA in training set Warning: unaligning (T0547)D480 (2arcA)W95 because Y (epsilon') conformation "forbidden" or filtered. T0547 478 :IW 2arcA 93 :HQ T0547 481 :ITCDSD 2arcA 96 :VYFRPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=103361 # 1a8d.479.170 read from T0547.t06.many.frag # found chain 1a8d in training set T0547 479 :WDITCDSDG 1a8d 171 :ITITNDRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=103362 # 1svpA.479.137 read from T0547.t06.many.frag # found chain 1svpA in template set T0547 479 :WDITCDSDG 1svpA 243 :SVVTWNSKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=103363 # 1xksA.479.165 read from T0547.t06.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)D484 (1xksA)E235 because P (beta_P) conformation "forbidden" or filtered. T0547 479 :WDITC 1xksA 230 :IRLIP T0547 485 :SDG 1xksA 236 :SSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=103365 # 2b4wA.479.266 read from T0547.t06.many.frag # found chain 2b4wA in template set Warning: unaligning (T0547)D480 (2b4wA)G268 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (2b4wA)R272 because E (beta_S) conformation "forbidden" or filtered. T0547 479 :W 2b4wA 267 :S T0547 481 :ITC 2b4wA 269 :IVM T0547 485 :SDG 2b4wA 273 :SDG Number of specific fragments extracted= 3 number of extra gaps= 2 total=103368 # 2c5uA.479.179 read from T0547.t06.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)D480 (2c5uA)N180 because Y (epsilon') conformation "forbidden" or filtered. T0547 479 :W 2c5uA 179 :L T0547 481 :ITCDSDG 2c5uA 181 :VRENETG Number of specific fragments extracted= 2 number of extra gaps= 1 total=103370 # 1pguA.479.119 read from T0547.t06.many.frag # found chain 1pguA in template set T0547 479 :WDITCDSDG 1pguA 120 :SDISWDFEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=103371 # 1w0pA.479.406 read from T0547.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)T482 (1w0pA)S410 because Y (epsilon') conformation "forbidden" or filtered. T0547 479 :WDI 1w0pA 407 :VTL T0547 483 :CDSDG 1w0pA 411 :IDESG Number of specific fragments extracted= 2 number of extra gaps= 1 total=103373 # 2biwA.479.212 read from T0547.t06.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)D480 (2biwA)L214 because E (beta_S) conformation "forbidden" or filtered. T0547 479 :W 2biwA 213 :T T0547 481 :ITCDSDG 2biwA 215 :LELDPQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=103375 # 1ryoA.479.248 read from T0547.t06.many.frag # found chain 1ryoA in training set T0547 479 :WDITCDSDG 1ryoA 249 :HTVVARSMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=103376 # 1vlyA.479.291 read from T0547.t06.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)D480 (1vlyA)A281 because Y (epsilon') conformation "forbidden" or filtered. T0547 479 :W 1vlyA 280 :L T0547 481 :ITCDSDG 1vlyA 282 :AVKLEDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=103378 # 1vkdA.479.296 read from T0547.t06.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)C483 (1vkdA)C289 because E (beta_S) conformation "forbidden" or filtered. T0547 479 :WDIT 1vkdA 285 :CAAL T0547 484 :DSDG 1vkdA 290 :DADT Number of specific fragments extracted= 2 number of extra gaps= 1 total=103380 # 1w6gA.479.322 read from T0547.t06.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)D480 (1w6gA)P326 because P (beta_P) conformation "forbidden" or filtered. T0547 479 :W 1w6gA 325 :S T0547 481 :ITCDSDG 1w6gA 327 :VISDAFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=103382 # 1f60A.479.340 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)W479 (1f60A)T341 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S485 (1f60A)H347 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (1f60A)P348 because N (gamma') conformation "forbidden" or filtered. T0547 480 :DITCD 1f60A 342 :VIVLN T0547 487 :G 1f60A 349 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=103384 # 1y08A.479.250 read from T0547.t06.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)D480 (1y08A)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 479 :W 1y08A 267 :W T0547 481 :ITCDSDG 1y08A 269 :ADFDSNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=103386 # 2bjfA.479.278 read from T0547.t06.many.frag # found chain 2bjfA in training set T0547 479 :WDITCDSDG 2bjfA 279 :TSCMCLEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=103387 # 1dyoA.479.90 read from T0547.t06.many.frag # found chain 1dyoA in template set Warning: unaligning (T0547)W479 (1dyoA)K91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (1dyoA)L92 because E (beta_S) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 1dyoA 93 :QYVDGSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=103388 # 2ae0X.479.273 read from T0547.t06.many.frag # found chain 2ae0X in template set T0547 479 :WDITCDSDG 2ae0X 274 :EVPLLDNNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=103389 # 1mfmA.479.84 read from T0547.t06.many.frag # found chain 1mfmA in training set T0547 479 :WDITCDSDG 1mfmA 85 :GNVTADKDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=103390 # 1nls.479.50 read from T0547.t06.many.frag # found chain 1nls in training set T0547 479 :WDITCDSDG 1nls 51 :HIIYNSVDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=103391 # 1iicA.479.279 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 479 :WDITCDSDG 1iicA 313 :SYVVEQPDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=103392 # 1pq7A.479.120 read from T0547.t06.many.frag # found chain 1pq7A in training set Warning: unaligning (T0547)D480 (1pq7A)G137 because Y (epsilon') conformation "forbidden" or filtered. T0547 479 :W 1pq7A 136 :A T0547 481 :ITCDSDG 1pq7A 138 :WGATSEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=103394 # 1xe7A.479.111 read from T0547.t06.many.frag # found chain 1xe7A in training set T0547 479 :WDITCDSDG 1xe7A 112 :QYVLVYPDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=103395 # 1ykdA.479.325 read from T0547.t06.many.frag # found chain 1ykdA in template set Warning: unaligning (T0547)W479 because of BadResidue code BAD_PEPTIDE in next template residue (1ykdA)L384 Warning: unaligning (T0547)D480 because of BadResidue code BAD_PEPTIDE at template residue (1ykdA)L384 Warning: unaligning (T0547)T482 (1ykdA)N386 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (1ykdA)K388 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :I 1ykdA 385 :V T0547 483 :C 1ykdA 387 :K T0547 485 :SDG 1ykdA 389 :KTG Number of specific fragments extracted= 3 number of extra gaps= 3 total=103398 # 1rp0A.479.182 read from T0547.t06.many.frag # found chain 1rp0A in training set Warning: unaligning (T0547)T482 (1rp0A)S186 because D (zeta) conformation "forbidden" or filtered. T0547 479 :WDI 1rp0A 183 :VVS T0547 483 :CDSDG 1rp0A 187 :CGHDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=103400 1fjgE expands to /projects/compbio/data/pdb/1fjg.pdb.gz 1fjgE:# 1fjgE.479.30 read from T0547.t06.many.frag # adding 1fjgE to template set # found chain 1fjgE in template set T0547 479 :WDITCDSDG 1fjgE 31 :LVVVGDRQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=103401 # 3seb.479.115 read from T0547.t06.many.frag # found chain 3seb in training set Warning: unaligning (T0547)W479 (3seb)G116 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D480 (3seb)G117 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (3seb)G123 because T (delta_L) conformation "forbidden" or filtered. T0547 481 :ITCDS 3seb 118 :VTEHN T0547 487 :G 3seb 124 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=103403 # 2a74A.479.511 read from T0547.t06.many.frag # found chain 2a74A in template set T0547 479 :WDITCDSDG 2a74A 512 :YYTLIGASG Number of specific fragments extracted= 1 number of extra gaps= 0 total=103404 # 1rq2A.479.261 read from T0547.t06.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)C483 (1rq2A)G263 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (1rq2A)G264 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G487 (1rq2A)L267 because P (beta_P) conformation "forbidden" or filtered. T0547 479 :WDIT 1rq2A 259 :MSIA T0547 485 :SD 1rq2A 265 :SD Number of specific fragments extracted= 2 number of extra gaps= 2 total=103406 # 1l2hA.479.57 read from T0547.t06.many.frag # found chain 1l2hA in template set Warning: unaligning (T0547)S485 (1l2hA)E64 because L (left) conformation "forbidden" or filtered. T0547 479 :WDITCD 1l2hA 58 :VALGLK T0547 486 :DG 1l2hA 65 :KN Number of specific fragments extracted= 2 number of extra gaps= 1 total=103408 # 1ntyA.479.235 read from T0547.t06.many.frag # found chain 1ntyA in training set Warning: unaligning (T0547)W479 (1ntyA)S1460 because Y (epsilon') conformation "forbidden" or filtered. T0547 480 :DITCDSDG 1ntyA 1461 :KEVKDSSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=103409 # 1svpA.480.138 read from T0547.t06.many.frag # found chain 1svpA in template set T0547 480 :DITCDSDGE 1svpA 244 :VVTWNSKGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=103410 # 2b4wA.480.267 read from T0547.t06.many.frag # found chain 2b4wA in template set T0547 480 :DITCDSDGE 2b4wA 268 :GIVMRSDGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=103411 # 1xksA.480.166 read from T0547.t06.many.frag # found chain 1xksA in template set T0547 480 :DITCDSDGE 1xksA 231 :RLIPESSGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=103412 # 1a8d.480.171 read from T0547.t06.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)D480 (1a8d)T172 because E (beta_S) conformation "forbidden" or filtered. T0547 481 :ITCDSDGE 1a8d 173 :ITNDRLSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=103413 # 1w6gA.480.323 read from T0547.t06.many.frag # found chain 1w6gA in training set T0547 480 :DITCDSDGE 1w6gA 326 :PVISDAFGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=103414 # 1pguA.480.120 read from T0547.t06.many.frag # found chain 1pguA in template set T0547 480 :DITCDSDGE 1pguA 121 :DISWDFEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=103415 # 1iicA.480.280 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 480 :DITCDSDGE 1iicA 314 :YVVEQPDGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=103416 # 2biwA.480.213 read from T0547.t06.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)D480 (2biwA)L214 because E (beta_S) conformation "forbidden" or filtered. T0547 481 :ITCDSDGE 2biwA 215 :LELDPQGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=103417 # 1xe7A.480.112 read from T0547.t06.many.frag # found chain 1xe7A in training set Warning: unaligning (T0547)D480 (1xe7A)Y113 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D484 (1xe7A)Y117 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :ITC 1xe7A 114 :VLV T0547 485 :SDGE 1xe7A 118 :PDGQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=103419 # 1vlyA.480.292 read from T0547.t06.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)D480 (1vlyA)A281 because Y (epsilon') conformation "forbidden" or filtered. T0547 481 :ITCDSDGE 1vlyA 282 :AVKLEDGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=103420 # 1w0pA.480.407 read from T0547.t06.many.frag # found chain 1w0pA in training set T0547 480 :DITCDSDGE 1w0pA 408 :TLSIDESGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=103421 # 1dyoA.480.91 read from T0547.t06.many.frag # found chain 1dyoA in template set T0547 480 :DITCDSDGE 1dyoA 92 :LQYVDGSGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=103422 # 1br9.480.165 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)S485 because of BadResidue code BAD_PEPTIDE in next template residue (1br9)D172 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE at template residue (1br9)D172 Warning: unaligning (T0547)E488 (1br9)S174 because P (beta_P) conformation "forbidden" or filtered. T0547 480 :DITCD 1br9 166 :ACIKR T0547 487 :G 1br9 173 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=103424 # 1mfmA.480.85 read from T0547.t06.many.frag # found chain 1mfmA in training set T0547 480 :DITCDSDGE 1mfmA 86 :NVTADKDGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103425 # 1y08A.480.251 read from T0547.t06.many.frag # found chain 1y08A in template set Warning: unaligning (T0547)D480 (1y08A)G268 because Y (epsilon') conformation "forbidden" or filtered. T0547 481 :ITCDSDGE 1y08A 269 :ADFDSNGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=103426 # 1f60A.480.341 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)D484 (1f60A)N346 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S485 (1f60A)H347 because Y (epsilon') conformation "forbidden" or filtered. T0547 480 :DITC 1f60A 342 :VIVL T0547 486 :DGE 1f60A 348 :PGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=103428 # 1vkdA.480.297 read from T0547.t06.many.frag # found chain 1vkdA in template set Warning: unaligning (T0547)G487 (1vkdA)T293 because G (3-10) conformation "forbidden" or filtered. T0547 480 :DITCDSD 1vkdA 286 :AALCDAD T0547 488 :E 1vkdA 294 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=103430 1xvsA expands to /projects/compbio/data/pdb/1xvs.pdb.gz 1xvsA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xvsA.480.50 read from T0547.t06.many.frag # adding 1xvsA to template set # found chain 1xvsA in template set Warning: unaligning (T0547)D484 because of BadResidue code BAD_PEPTIDE in next template residue (1xvsA)A56 Warning: unaligning (T0547)S485 because of BadResidue code BAD_PEPTIDE at template residue (1xvsA)A56 T0547 480 :DITC 1xvsA 51 :WLIT T0547 486 :DGE 1xvsA 57 :DGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=103432 # 1ryoA.480.249 read from T0547.t06.many.frag # found chain 1ryoA in training set Warning: unaligning (T0547)D486 (1ryoA)M256 because E (beta_S) conformation "forbidden" or filtered. T0547 480 :DITCDS 1ryoA 250 :TVVARS T0547 487 :GE 1ryoA 257 :GG Number of specific fragments extracted= 2 number of extra gaps= 1 total=103434 # 2bjfA.480.279 read from T0547.t06.many.frag # found chain 2bjfA in training set T0547 480 :DITCDSDGE 2bjfA 280 :SCMCLEKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=103435 # 2ae0X.480.274 read from T0547.t06.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)E488 (2ae0X)K283 because E (beta_S) conformation "forbidden" or filtered. T0547 480 :DITCDSDG 2ae0X 275 :VPLLDNNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=103436 # 1nls.480.51 read from T0547.t06.many.frag # found chain 1nls in training set T0547 480 :DITCDSDGE 1nls 52 :IIYNSVDKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=103437 # 1lm8V.480.32 read from T0547.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)D480 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1lm8V)E94 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 1lm8V 87 :VWLNFDG Number of specific fragments extracted= 1 number of extra gaps= 2 total=103438 # 2c5uA.480.180 read from T0547.t06.many.frag # found chain 2c5uA in template set Warning: unaligning (T0547)D480 (2c5uA)N180 because Y (epsilon') conformation "forbidden" or filtered. T0547 481 :ITCDSDGE 2c5uA 181 :VRENETGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=103439 # 2a74A.480.512 read from T0547.t06.many.frag # found chain 2a74A in template set T0547 480 :DITCDSDGE 2a74A 513 :YTLIGASGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=103440 # 1ntyA.480.236 read from T0547.t06.many.frag # found chain 1ntyA in training set T0547 480 :DITCDSDGE 1ntyA 1461 :KEVKDSSGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=103441 # 1rp0A.480.183 read from T0547.t06.many.frag # found chain 1rp0A in training set Warning: unaligning (T0547)D484 (1rp0A)G188 because S (epsilon) conformation "forbidden" or filtered. T0547 480 :DITC 1rp0A 184 :VSSC T0547 485 :SDGE 1rp0A 189 :HDGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=103443 # 3seb.480.116 read from T0547.t06.many.frag # found chain 3seb in training set Warning: unaligning (T0547)D486 (3seb)G123 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G487 (3seb)N124 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (3seb)Q125 because P (beta_P) conformation "forbidden" or filtered. T0547 480 :DITCDS 3seb 117 :GVTEHN Number of specific fragments extracted= 1 number of extra gaps= 1 total=103444 # 1f86A.480.22 read from T0547.t06.many.frag # found chain 1f86A in training set T0547 480 :DITCDSDGE 1f86A 32 :VFRKAADDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=103445 # 1dzkA.480.101 read from T0547.t06.many.frag # found chain 1dzkA in training set Warning: unaligning (T0547)E488 (1dzkA)D110 because P (beta_P) conformation "forbidden" or filtered. T0547 480 :DITCDSDG 1dzkA 102 :NINVDEEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=103446 # 1xksA.481.167 read from T0547.t06.many.frag # found chain 1xksA in template set T0547 481 :ITCDSDGEI 1xksA 232 :LIPESSGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=103447 # 1iicA.481.281 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 481 :ITCDSDGEI 1iicA 315 :VVEQPDGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=103448 # 1svpA.481.139 read from T0547.t06.many.frag # found chain 1svpA in template set Warning: unaligning (T0547)E488 (1svpA)K252 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :ITCDSDG 1svpA 245 :VTWNSKG T0547 489 :I 1svpA 253 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=103450 # 2b4wA.481.268 read from T0547.t06.many.frag # found chain 2b4wA in template set Warning: unaligning (T0547)D484 (2b4wA)R272 because E (beta_S) conformation "forbidden" or filtered. T0547 481 :ITC 2b4wA 269 :IVM T0547 485 :SDGEI 2b4wA 273 :SDGKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103452 # 1w6gA.481.324 read from T0547.t06.many.frag # found chain 1w6gA in training set T0547 481 :ITCDSDGEI 1w6gA 327 :VISDAFGNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=103453 # 1xe7A.481.113 read from T0547.t06.many.frag # found chain 1xe7A in training set T0547 481 :ITCDSDGEI 1xe7A 114 :VLVYPDGQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103454 # 2biwA.481.214 read from T0547.t06.many.frag # found chain 2biwA in template set T0547 481 :ITCDSDGEI 2biwA 215 :LELDPQGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=103455 # 1xvsA.481.51 read from T0547.t06.many.frag # found chain 1xvsA in template set Warning: unaligning (T0547)D484 because of BadResidue code BAD_PEPTIDE in next template residue (1xvsA)A56 Warning: unaligning (T0547)S485 because of BadResidue code BAD_PEPTIDE at template residue (1xvsA)A56 T0547 481 :ITC 1xvsA 52 :LIT T0547 486 :DGEI 1xvsA 57 :DGKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=103457 # 1pguA.481.121 read from T0547.t06.many.frag # found chain 1pguA in template set T0547 481 :ITCDSDGEI 1pguA 122 :ISWDFEGRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=103458 # 1br9.481.166 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)S485 because of BadResidue code BAD_PEPTIDE in next template residue (1br9)D172 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE at template residue (1br9)D172 T0547 481 :ITCD 1br9 167 :CIKR T0547 487 :GEI 1br9 173 :GSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=103460 # 1mfmA.481.86 read from T0547.t06.many.frag # found chain 1mfmA in training set T0547 481 :ITCDSDGEI 1mfmA 87 :VTADKDGVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=103461 # 1a8d.481.172 read from T0547.t06.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)G487 (1a8d)S179 because Y (epsilon') conformation "forbidden" or filtered. T0547 481 :ITCDSD 1a8d 173 :ITNDRL T0547 488 :EI 1a8d 180 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=103463 # 1vlyA.481.293 read from T0547.t06.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)D484 (1vlyA)L285 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :ITC 1vlyA 282 :AVK T0547 485 :SDGEI 1vlyA 286 :EDGQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103465 # 1w0pA.481.408 read from T0547.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)T482 (1w0pA)S410 because Y (epsilon') conformation "forbidden" or filtered. T0547 481 :I 1w0pA 409 :L T0547 483 :CDSDGEI 1w0pA 411 :IDESGGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=103467 # 1dyoA.481.92 read from T0547.t06.many.frag # found chain 1dyoA in template set T0547 481 :ITCDSDGEI 1dyoA 93 :QYVDGSGTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=103468 # 1cqyA.481.66 read from T0547.t06.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)I481 (1cqyA)F484 because Y (epsilon') conformation "forbidden" or filtered. T0547 482 :TCDSDGEI 1cqyA 485 :IKSKDGTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=103469 # 2ae0X.481.275 read from T0547.t06.many.frag # found chain 2ae0X in template set T0547 481 :ITCDSDGEI 2ae0X 276 :PLLDNNGKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=103470 # 1y08A.481.252 read from T0547.t06.many.frag # found chain 1y08A in template set T0547 481 :ITCDSDGEI 1y08A 269 :ADFDSNGNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=103471 # 1lm8V.481.33 read from T0547.t06.many.frag # found chain 1lm8V in template set T0547 481 :ITCDSDGEI 1lm8V 87 :VWLNFDGEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=103472 # 1rp0A.481.184 read from T0547.t06.many.frag # found chain 1rp0A in training set Warning: unaligning (T0547)T482 (1rp0A)S186 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)C483 (1rp0A)C187 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S485 (1rp0A)H189 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I489 (1rp0A)F193 because G (3-10) conformation "forbidden" or filtered. T0547 481 :I 1rp0A 185 :S T0547 484 :D 1rp0A 188 :G T0547 486 :DGE 1rp0A 190 :DGP Number of specific fragments extracted= 3 number of extra gaps= 3 total=103475 # 1yq2A.481.658 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)D484 (1yq2A)G661 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (1yq2A)D663 because D (zeta) conformation "forbidden" or filtered. T0547 481 :ITC 1yq2A 658 :AAE T0547 485 :S 1yq2A 662 :S T0547 487 :GEI 1yq2A 664 :GPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=103478 # 1nls.481.52 read from T0547.t06.many.frag # found chain 1nls in training set Warning: unaligning (T0547)T482 (1nls)Y54 because Y (epsilon') conformation "forbidden" or filtered. T0547 481 :I 1nls 53 :I T0547 483 :CDSDGEI 1nls 55 :NSVDKRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=103480 # 1ntyA.481.237 read from T0547.t06.many.frag # found chain 1ntyA in training set T0547 481 :ITCDSDGEI 1ntyA 1462 :EVKDSSGRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=103481 # 1rg8A.481.28 read from T0547.t06.many.frag # found chain 1rg8A in training set T0547 481 :ITCDSDGEI 1rg8A 23 :LRILPDGTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103482 # 1f86A.481.23 read from T0547.t06.many.frag # found chain 1f86A in training set T0547 481 :ITCDSDGEI 1f86A 33 :FRKAADDTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=103483 # 1pbyB.481.86 read from T0547.t06.many.frag # found chain 1pbyB in training set Warning: unaligning (T0547)D484 (1pbyB)S90 because P (beta_P) conformation "forbidden" or filtered. T0547 481 :ITC 1pbyB 87 :AAL T0547 485 :SDGEI 1pbyB 91 :PDGKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=103485 # 1omhA.481.168 read from T0547.t06.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)T482 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1omhA)T170 T0547 483 :CDSDGEI 1omhA 171 :KRSDGQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=103486 # 1f60A.481.342 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)D484 (1f60A)N346 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S485 (1f60A)H347 because Y (epsilon') conformation "forbidden" or filtered. T0547 481 :ITC 1f60A 343 :IVL T0547 486 :DGEI 1f60A 348 :PGQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=103488 # 1fviA.481.234 read from T0547.t06.many.frag # found chain 1fviA in template set Warning: unaligning (T0547)S485 (1fviA)Y240 because L (left) conformation "forbidden" or filtered. T0547 481 :ITCD 1fviA 236 :IEVD T0547 486 :DGEI 1fviA 241 :DGVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103490 # 1ykdA.481.327 read from T0547.t06.many.frag # found chain 1ykdA in template set T0547 481 :ITCDSDGEI 1ykdA 385 :VNKKKTGEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=103491 # 1iicA.482.282 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 482 :TCDSDGEIS 1iicA 316 :VEQPDGKIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=103492 # 1xksA.482.168 read from T0547.t06.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)D484 (1xksA)E235 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TC 1xksA 233 :IP T0547 485 :SDGEIS 1xksA 236 :SSGKIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=103494 # 1xe7A.482.114 read from T0547.t06.many.frag # found chain 1xe7A in training set T0547 482 :TCDSDGEIS 1xe7A 115 :LVYPDGQVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=103495 # 2b4wA.482.269 read from T0547.t06.many.frag # found chain 2b4wA in template set Warning: unaligning (T0547)E488 (2b4wA)K276 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TCDSDG 2b4wA 270 :VMRSDG T0547 489 :IS 2b4wA 277 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=103497 # 1w6gA.482.325 read from T0547.t06.many.frag # found chain 1w6gA in training set T0547 482 :TCDSDGEIS 1w6gA 328 :ISDAFGNPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=103498 # 1xvsA.482.52 read from T0547.t06.many.frag # found chain 1xvsA in template set Warning: unaligning (T0547)D484 because of BadResidue code BAD_PEPTIDE in next template residue (1xvsA)A56 Warning: unaligning (T0547)S485 because of BadResidue code BAD_PEPTIDE at template residue (1xvsA)A56 T0547 482 :TC 1xvsA 53 :IT T0547 486 :DGEIS 1xvsA 57 :DGKQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=103500 # 1svpA.482.140 read from T0547.t06.many.frag # found chain 1svpA in template set T0547 482 :TCDSDGEIS 1svpA 246 :TWNSKGKTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=103501 # 1br9.482.167 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)S485 because of BadResidue code BAD_PEPTIDE in next template residue (1br9)D172 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE at template residue (1br9)D172 Warning: unaligning (T0547)S490 (1br9)A176 because Y (epsilon') conformation "forbidden" or filtered. T0547 482 :TCD 1br9 168 :IKR T0547 487 :GEI 1br9 173 :GSC Number of specific fragments extracted= 2 number of extra gaps= 2 total=103503 # 2biwA.482.215 read from T0547.t06.many.frag # found chain 2biwA in template set T0547 482 :TCDSDGEIS 2biwA 216 :ELDPQGKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=103504 # 1mfmA.482.87 read from T0547.t06.many.frag # found chain 1mfmA in training set T0547 482 :TCDSDGEIS 1mfmA 88 :TADKDGVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=103505 # 1cqyA.482.67 read from T0547.t06.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)E488 (1cqyA)T491 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TCDSDG 1cqyA 485 :IKSKDG T0547 489 :IS 1cqyA 492 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=103507 # 1yq2A.482.659 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)S490 (1yq2A)R667 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TCDSDGEI 1yq2A 659 :AEGSDGPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=103508 # 1y08A.482.253 read from T0547.t06.many.frag # found chain 1y08A in template set T0547 482 :TCDSDGEIS 1y08A 270 :DFDSNGNLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=103509 # 1lm8V.482.34 read from T0547.t06.many.frag # found chain 1lm8V in template set T0547 482 :TCDSDGEIS 1lm8V 88 :WLNFDGEPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=103510 # 2ae0X.482.276 read from T0547.t06.many.frag # found chain 2ae0X in template set T0547 482 :TCDSDGEIS 2ae0X 277 :LLDNNGKFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=103511 # 1omhA.482.169 read from T0547.t06.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)T482 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1omhA)T170 T0547 483 :CDSDGEIS 1omhA 171 :KRSDGQWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=103512 # 1w0pA.482.409 read from T0547.t06.many.frag # found chain 1w0pA in training set T0547 482 :TCDSDGEIS 1w0pA 410 :SIDESGGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103513 # 1ou8A.482.92 read from T0547.t06.many.frag # found chain 1ou8A in training set T0547 482 :TCDSDGEIS 1ou8A 93 :YARENGDGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103514 # 1rg8A.482.29 read from T0547.t06.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)E488 (1rg8A)T30 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TCDSDG 1rg8A 24 :RILPDG T0547 489 :IS 1rg8A 31 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=103516 # 1rg8A.482.71 read from T0547.t06.many.frag # found chain 1rg8A in training set T0547 482 :TCDSDGEIS 1rg8A 66 :AMDTDGLLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=103517 # 1vlyA.482.294 read from T0547.t06.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)D484 (1vlyA)L285 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TC 1vlyA 283 :VK T0547 485 :SDGEIS 1vlyA 286 :EDGQVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103519 # 1pguA.482.122 read from T0547.t06.many.frag # found chain 1pguA in template set T0547 482 :TCDSDGEIS 1pguA 123 :SWDFEGRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=103520 # 1w0pA.482.334 read from T0547.t06.many.frag # found chain 1w0pA in training set T0547 482 :TCDSDGEIS 1w0pA 335 :YDVASGNWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=103521 # 1o7jA.482.276 read from T0547.t06.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)E488 (1o7jA)I283 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TCDSDG 1o7jA 277 :TRTGNG T0547 489 :IS 1o7jA 284 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=103523 # 1acc.482.645 read from T0547.t06.many.frag # found chain 1acc in template set T0547 482 :TCDSDGEIS 1acc 646 :IEDTEGLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103524 # 1dyoA.482.93 read from T0547.t06.many.frag # found chain 1dyoA in template set T0547 482 :TCDSDGEIS 1dyoA 94 :YVDGSGTQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=103525 # 1f60A.482.343 read from T0547.t06.many.frag # found chain 1f60A in training set T0547 482 :TCDSDGEIS 1f60A 344 :VLNHPGQIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=103526 # 1sacA.482.97 read from T0547.t06.many.frag # found chain 1sacA in template set Warning: unaligning (T0547)E488 (1sacA)I104 because P (beta_P) conformation "forbidden" or filtered. T0547 482 :TCDSDG 1sacA 98 :WESSSG T0547 489 :IS 1sacA 105 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=103528 # 1fviA.482.235 read from T0547.t06.many.frag # found chain 1fviA in template set Warning: unaligning (T0547)S485 (1fviA)Y240 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1fviA)V243 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1fviA)F245 because Y (epsilon') conformation "forbidden" or filtered. T0547 482 :TCD 1fviA 237 :EVD T0547 486 :DG 1fviA 241 :DG T0547 489 :I 1fviA 244 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=103531 # 1qopB.482.285 read from T0547.t06.many.frag # found chain 1qopB in training set T0547 482 :TCDSDGEIS 1qopB 287 :MQTADGQIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103532 # 1iicA.483.283 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 483 :CDSDGEISY 1iicA 317 :EQPDGKITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=103533 # 1xksA.483.169 read from T0547.t06.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)D484 (1xksA)E235 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :C 1xksA 234 :P T0547 485 :SDGEISY 1xksA 236 :SSGKIHQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=103535 # 2b4wA.483.270 read from T0547.t06.many.frag # found chain 2b4wA in template set T0547 483 :CDSDGEISY 2b4wA 271 :MRSDGKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=103536 # 1xe7A.483.115 read from T0547.t06.many.frag # found chain 1xe7A in training set T0547 483 :CDSDGEISY 1xe7A 116 :VYPDGQVKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=103537 # 1br9.483.168 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)S485 because of BadResidue code BAD_PEPTIDE in next template residue (1br9)D172 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE at template residue (1br9)D172 Warning: unaligning (T0547)S490 (1br9)A176 because Y (epsilon') conformation "forbidden" or filtered. T0547 483 :CD 1br9 169 :KR T0547 487 :GEI 1br9 173 :GSC T0547 491 :Y 1br9 177 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=103540 # 1w6gA.483.326 read from T0547.t06.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)E488 (1w6gA)N334 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :CDSDG 1w6gA 329 :SDAFG T0547 489 :ISY 1w6gA 335 :PRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=103542 # 1cqyA.483.68 read from T0547.t06.many.frag # found chain 1cqyA in template set T0547 483 :CDSDGEISY 1cqyA 486 :KSKDGTVKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=103543 # 1mfmA.483.88 read from T0547.t06.many.frag # found chain 1mfmA in training set T0547 483 :CDSDGEISY 1mfmA 89 :ADKDGVADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103544 # 1y08A.483.254 read from T0547.t06.many.frag # found chain 1y08A in template set T0547 483 :CDSDGEISY 1y08A 271 :FDSNGNLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=103545 # 1xvsA.483.53 read from T0547.t06.many.frag # found chain 1xvsA in template set Warning: unaligning (T0547)D484 because of BadResidue code BAD_PEPTIDE in next template residue (1xvsA)A56 Warning: unaligning (T0547)S485 because of BadResidue code BAD_PEPTIDE at template residue (1xvsA)A56 T0547 483 :C 1xvsA 54 :T T0547 486 :DGEISY 1xvsA 57 :DGKQTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103547 # 2biwA.483.216 read from T0547.t06.many.frag # found chain 2biwA in template set T0547 483 :CDSDGEISY 2biwA 217 :LDPQGKLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=103548 # 1svpA.483.141 read from T0547.t06.many.frag # found chain 1svpA in template set T0547 483 :CDSDGEISY 1svpA 247 :WNSKGKTIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=103549 # 1yq2A.483.660 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)D484 (1yq2A)G661 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G487 (1yq2A)G664 because S (epsilon) conformation "forbidden" or filtered. T0547 483 :C 1yq2A 660 :E T0547 485 :SD 1yq2A 662 :SD T0547 488 :EISY 1yq2A 665 :PLRA Number of specific fragments extracted= 3 number of extra gaps= 2 total=103552 # 1rg8A.483.30 read from T0547.t06.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)D32 because Y (epsilon') conformation "forbidden" or filtered. T0547 483 :CDSDGEI 1rg8A 25 :ILPDGTV T0547 491 :Y 1rg8A 33 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=103554 # 1lm8V.483.35 read from T0547.t06.many.frag # found chain 1lm8V in template set T0547 483 :CDSDGEISY 1lm8V 89 :LNFDGEPQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=103555 # 2ae0X.483.277 read from T0547.t06.many.frag # found chain 2ae0X in template set Warning: unaligning (T0547)E488 (2ae0X)K283 because E (beta_S) conformation "forbidden" or filtered. T0547 483 :CDSDG 2ae0X 278 :LDNNG T0547 489 :ISY 2ae0X 284 :FNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=103557 # 1omhA.483.170 read from T0547.t06.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)S490 (1omhA)R178 because Y (epsilon') conformation "forbidden" or filtered. T0547 483 :CDSDGEI 1omhA 171 :KRSDGQW T0547 491 :Y 1omhA 179 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=103559 # 1rg8A.483.72 read from T0547.t06.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)Y74 because Y (epsilon') conformation "forbidden" or filtered. T0547 483 :CDSDGEI 1rg8A 67 :MDTDGLL T0547 491 :Y 1rg8A 75 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=103561 # 1fviA.483.236 read from T0547.t06.many.frag # found chain 1fviA in template set Warning: unaligning (T0547)S485 (1fviA)Y240 because L (left) conformation "forbidden" or filtered. T0547 483 :CD 1fviA 238 :VD T0547 486 :DGEISY 1fviA 241 :DGVVFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=103563 # 1o7iA.483.86 read from T0547.t06.many.frag # found chain 1o7iA in training set T0547 483 :CDSDGEISY 1o7iA 87 :AGSKTKIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103564 # 1w0pA.483.410 read from T0547.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)E488 (1w0pA)G416 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :CDSDG 1w0pA 411 :IDESG T0547 489 :ISY 1w0pA 417 :LVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=103566 # 1ou8A.483.93 read from T0547.t06.many.frag # found chain 1ou8A in training set T0547 483 :CDSDGEISY 1ou8A 94 :ARENGDGVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=103567 # 2a13A.483.83 read from T0547.t06.many.frag # found chain 2a13A in training set T0547 483 :CDSDGEISY 2a13A 84 :PRPDGSIEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103568 # 1acc.483.646 read from T0547.t06.many.frag # found chain 1acc in template set T0547 483 :CDSDGEISY 1acc 647 :EDTEGLKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103569 # 1qopB.483.286 read from T0547.t06.many.frag # found chain 1qopB in training set T0547 483 :CDSDGEISY 1qopB 288 :QTADGQIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103570 # 1w0pA.483.335 read from T0547.t06.many.frag # found chain 1w0pA in training set T0547 483 :CDSDGEISY 1w0pA 336 :DVASGNWQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=103571 # 1o7jA.483.277 read from T0547.t06.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)E488 (1o7jA)I283 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :CDSDG 1o7jA 278 :RTGNG T0547 489 :ISY 1o7jA 284 :VPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=103573 # 1vlyA.483.295 read from T0547.t06.many.frag # found chain 1vlyA in training set T0547 483 :CDSDGEISY 1vlyA 284 :KLEDGQVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103574 # 1f60A.483.344 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)S485 (1f60A)H347 because Y (epsilon') conformation "forbidden" or filtered. T0547 483 :CD 1f60A 345 :LN T0547 486 :DGEISY 1f60A 348 :PGQISA Number of specific fragments extracted= 2 number of extra gaps= 1 total=103576 # 1sacA.483.98 read from T0547.t06.many.frag # found chain 1sacA in template set Warning: unaligning (T0547)E488 (1sacA)I104 because P (beta_P) conformation "forbidden" or filtered. T0547 483 :CDSDG 1sacA 99 :ESSSG T0547 489 :ISY 1sacA 105 :AEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=103578 # 1iicA.484.284 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 484 :DSDGEISYS 1iicA 318 :QPDGKITDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=103579 # 1xksA.484.170 read from T0547.t06.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)S492 (1xksA)H243 because Y (epsilon') conformation "forbidden" or filtered. T0547 484 :DSDGEISY 1xksA 235 :ESSGKIHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=103580 # 1br9.484.169 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)S485 because of BadResidue code BAD_PEPTIDE in next template residue (1br9)D172 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE at template residue (1br9)D172 T0547 484 :D 1br9 170 :R T0547 487 :GEISYS 1br9 173 :GSCAWY Number of specific fragments extracted= 2 number of extra gaps= 1 total=103582 # 1cqyA.484.69 read from T0547.t06.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)E488 (1cqyA)T491 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y491 (1cqyA)S494 because Y (epsilon') conformation "forbidden" or filtered. T0547 484 :DSDG 1cqyA 487 :SKDG T0547 489 :IS 1cqyA 492 :VK T0547 492 :S 1cqyA 495 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=103585 # 2b4wA.484.271 read from T0547.t06.many.frag # found chain 2b4wA in template set T0547 484 :DSDGEISYS 2b4wA 272 :RSDGKVDLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=103586 # 1xe7A.484.116 read from T0547.t06.many.frag # found chain 1xe7A in training set T0547 484 :DSDGEISYS 1xe7A 117 :YPDGQVKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=103587 # 1y08A.484.255 read from T0547.t06.many.frag # found chain 1y08A in template set T0547 484 :DSDGEISYS 1y08A 272 :DSNGNLKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=103588 # 1w6gA.484.327 read from T0547.t06.many.frag # found chain 1w6gA in training set T0547 484 :DSDGEISYS 1w6gA 330 :DAFGNPREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=103589 # 1rg8A.484.31 read from T0547.t06.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)E488 (1rg8A)T30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1rg8A)D32 because Y (epsilon') conformation "forbidden" or filtered. T0547 484 :DSDG 1rg8A 26 :LPDG T0547 489 :I 1rg8A 31 :V T0547 491 :YS 1rg8A 33 :GT Number of specific fragments extracted= 3 number of extra gaps= 2 total=103592 # 1mfmA.484.89 read from T0547.t06.many.frag # found chain 1mfmA in training set Warning: unaligning (T0547)E488 (1mfmA)V94 because E (beta_S) conformation "forbidden" or filtered. T0547 484 :DSDG 1mfmA 90 :DKDG T0547 489 :ISYS 1mfmA 95 :ADVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=103594 # 1yq2A.484.661 read from T0547.t06.many.frag # found chain 1yq2A in template set T0547 484 :DSDGEISYS 1yq2A 661 :GSDGPLRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=103595 # 1lm8V.484.36 read from T0547.t06.many.frag # found chain 1lm8V in template set T0547 484 :DSDGEISYS 1lm8V 90 :NFDGEPQPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=103596 # 1xvsA.484.54 read from T0547.t06.many.frag # found chain 1xvsA in template set Warning: unaligning (T0547)D484 because of BadResidue code BAD_PEPTIDE in next template residue (1xvsA)A56 Warning: unaligning (T0547)S485 because of BadResidue code BAD_PEPTIDE at template residue (1xvsA)A56 T0547 486 :DGEISYS 1xvsA 57 :DGKQTVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=103597 # 1omhA.484.171 read from T0547.t06.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)S490 (1omhA)R178 because Y (epsilon') conformation "forbidden" or filtered. T0547 484 :DSDGEI 1omhA 172 :RSDGQW T0547 491 :YS 1omhA 179 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=103599 # 2ae0X.484.278 read from T0547.t06.many.frag # found chain 2ae0X in template set T0547 484 :DSDGEISYS 2ae0X 279 :DNNGKFNGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=103600 # 1o7iA.484.87 read from T0547.t06.many.frag # found chain 1o7iA in training set Warning: unaligning (T0547)D484 (1o7iA)G88 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEISYS 1o7iA 89 :SKTKIAEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=103601 # 1bjt.484.570 read from T0547.t06.many.frag # found chain 1bjt in template set T0547 484 :DSDGEISYS 1bjt 979 :DPHGKIKKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=103602 # 1rg8A.484.73 read from T0547.t06.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)Y74 because Y (epsilon') conformation "forbidden" or filtered. T0547 484 :DSDGEI 1rg8A 68 :DTDGLL T0547 491 :YS 1rg8A 75 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=103604 # 1fviA.484.237 read from T0547.t06.many.frag # found chain 1fviA in template set Warning: unaligning (T0547)S485 (1fviA)Y240 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (1fviA)D241 because L (left) conformation "forbidden" or filtered. T0547 484 :D 1fviA 239 :D T0547 487 :GEISYS 1fviA 242 :GVVFSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=103606 # 1svpA.484.142 read from T0547.t06.many.frag # found chain 1svpA in template set T0547 484 :DSDGEISYS 1svpA 248 :NSKGKTIKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=103607 # 2biwA.484.217 read from T0547.t06.many.frag # found chain 2biwA in template set Warning: unaligning (T0547)E488 (2biwA)K222 because P (beta_P) conformation "forbidden" or filtered. T0547 484 :DSDG 2biwA 218 :DPQG T0547 489 :ISYS 2biwA 223 :LLRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=103609 # 1acc.484.647 read from T0547.t06.many.frag # found chain 1acc in template set Warning: unaligning (T0547)E488 (1acc)L652 because P (beta_P) conformation "forbidden" or filtered. T0547 484 :DSDG 1acc 648 :DTEG T0547 489 :ISYS 1acc 653 :KEVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=103611 # 2a13A.484.84 read from T0547.t06.many.frag # found chain 2a13A in training set T0547 484 :DSDGEISYS 2a13A 85 :RPDGSIEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103612 # 1ou8A.484.94 read from T0547.t06.many.frag # found chain 1ou8A in training set T0547 484 :DSDGEISYS 1ou8A 95 :RENGDGVMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=103613 # 1qopB.484.287 read from T0547.t06.many.frag # found chain 1qopB in training set T0547 484 :DSDGEISYS 1qopB 289 :TADGQIEES Number of specific fragments extracted= 1 number of extra gaps= 0 total=103614 # 1g6xA.484.24 read from T0547.t06.many.frag # found chain 1g6xA in training set Warning: unaligning (T0547)G487 because of BadResidue code BAD_PEPTIDE in next template residue (1g6xA)L29 Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE at template residue (1g6xA)L29 Warning: unaligning (T0547)I489 because of BadResidue code BAD_PEPTIDE at template residue (1g6xA)C30 Warning: unaligning (T0547)S492 (1g6xA)F33 because Y (epsilon') conformation "forbidden" or filtered. T0547 484 :DSD 1g6xA 25 :AKA T0547 490 :SY 1g6xA 31 :QT Number of specific fragments extracted= 2 number of extra gaps= 2 total=103616 # 1t61A.484.176 read from T0547.t06.many.frag # found chain 1t61A in training set T0547 484 :DSDGEISYS 1t61A 177 :HGRGTCNYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=103617 # 1sacA.484.99 read from T0547.t06.many.frag # found chain 1sacA in template set T0547 484 :DSDGEISYS 1sacA 100 :SSSGIAEFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=103618 # 1h2wA.484.284 read from T0547.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0547)D484 (1h2wA)N285 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEISYS 1h2wA 286 :FEGEYDYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=103619 # 1nwzA.484.33 read from T0547.t06.many.frag # found chain 1nwzA in training set Warning: unaligning (T0547)E488 (1nwzA)N38 because P (beta_P) conformation "forbidden" or filtered. T0547 484 :DSDG 1nwzA 34 :DGDG T0547 489 :ISYS 1nwzA 39 :ILQY Number of specific fragments extracted= 2 number of extra gaps= 1 total=103621 # 1iicA.485.285 read from T0547.t06.many.frag # found chain 1iicA in template set T0547 485 :SDGEISYSK 1iicA 319 :PDGKITDFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=103622 # 1xksA.485.171 read from T0547.t06.many.frag # found chain 1xksA in template set T0547 485 :SDGEISYSK 1xksA 236 :SSGKIHQHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=103623 # 1cqyA.485.70 read from T0547.t06.many.frag # found chain 1cqyA in template set T0547 485 :SDGEISYSK 1cqyA 488 :KDGTVKSWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=103624 # 1br9.485.170 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)S485 because of BadResidue code BAD_PEPTIDE in next template residue (1br9)D172 Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE at template residue (1br9)D172 T0547 487 :GEISYSK 1br9 173 :GSCAWYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=103625 # 1xe7A.485.117 read from T0547.t06.many.frag # found chain 1xe7A in training set T0547 485 :SDGEISYSK 1xe7A 118 :PDGQVKSFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=103626 # 1rg8A.485.32 read from T0547.t06.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)D32 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEI 1rg8A 27 :PDGTV T0547 491 :YSK 1rg8A 33 :GTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=103628 # 1w6gA.485.328 read from T0547.t06.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)E488 (1w6gA)N334 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1w6gA)R339 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDG 1w6gA 331 :AFG T0547 489 :ISYS 1w6gA 335 :PREI Number of specific fragments extracted= 2 number of extra gaps= 2 total=103630 # 1yq2A.485.662 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)S492 (1yq2A)G669 because T (delta_L) conformation "forbidden" or filtered. T0547 485 :SDGEISY 1yq2A 662 :SDGPLRA T0547 493 :K 1yq2A 670 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=103632 # 1lm8V.485.37 read from T0547.t06.many.frag # found chain 1lm8V in template set T0547 485 :SDGEISYSK 1lm8V 91 :FDGEPQPYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=103633 # 2b4wA.485.272 read from T0547.t06.many.frag # found chain 2b4wA in template set T0547 485 :SDGEISYSK 2b4wA 273 :SDGKVDLYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=103634 # 1y08A.485.256 read from T0547.t06.many.frag # found chain 1y08A in template set T0547 485 :SDGEISYSK 1y08A 273 :SNGNLKAIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=103635 # 1o7iA.485.88 read from T0547.t06.many.frag # found chain 1o7iA in training set Warning: unaligning (T0547)G487 (1o7iA)T91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1o7iA)K92 because E (beta_S) conformation "forbidden" or filtered. T0547 485 :SD 1o7iA 89 :SK T0547 489 :ISYSK 1o7iA 93 :IAEAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=103637 # 1g6xA.485.25 read from T0547.t06.many.frag # found chain 1g6xA in training set Warning: unaligning (T0547)G487 because of BadResidue code BAD_PEPTIDE in next template residue (1g6xA)L29 Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE at template residue (1g6xA)L29 Warning: unaligning (T0547)I489 because of BadResidue code BAD_PEPTIDE at template residue (1g6xA)C30 T0547 485 :SD 1g6xA 26 :KA T0547 490 :SYSK 1g6xA 31 :QTFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103639 # 1bjt.485.571 read from T0547.t06.many.frag # found chain 1bjt in template set T0547 485 :SDGEISYSK 1bjt 980 :PHGKIKKYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=103640 # 1nwzA.485.34 read from T0547.t06.many.frag # found chain 1nwzA in training set T0547 485 :SDGEISYSK 1nwzA 35 :GDGNILQYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=103641 # 2ae0X.485.279 read from T0547.t06.many.frag # found chain 2ae0X in template set T0547 485 :SDGEISYSK 2ae0X 280 :NNGKFNGQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=103642 # 1omhA.485.172 read from T0547.t06.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)S490 (1omhA)R178 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEI 1omhA 173 :SDGQW T0547 491 :YSK 1omhA 179 :ALK Number of specific fragments extracted= 2 number of extra gaps= 1 total=103644 # 1rg8A.485.74 read from T0547.t06.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)Y74 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEI 1rg8A 69 :TDGLL T0547 491 :YSK 1rg8A 75 :GSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=103646 # 1qopB.485.288 read from T0547.t06.many.frag # found chain 1qopB in training set T0547 485 :SDGEISYSK 1qopB 290 :ADGQIEESY Number of specific fragments extracted= 1 number of extra gaps= 0 total=103647 # 1xvsA.485.55 read from T0547.t06.many.frag # found chain 1xvsA in template set Warning: unaligning (T0547)S485 because of BadResidue code BAD_PEPTIDE at template residue (1xvsA)A56 T0547 486 :DGEISYSK 1xvsA 57 :DGKQTVVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=103648 # 1mfmA.485.90 read from T0547.t06.many.frag # found chain 1mfmA in training set T0547 485 :SDGEISYSK 1mfmA 91 :KDGVADVSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=103649 # 1ou8A.485.95 read from T0547.t06.many.frag # found chain 1ou8A in training set Warning: unaligning (T0547)E488 (1ou8A)D99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S492 (1ou8A)F103 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDG 1ou8A 96 :ENG T0547 489 :ISY 1ou8A 100 :GVM T0547 493 :K 1ou8A 104 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=103652 # 1acc.485.648 read from T0547.t06.many.frag # found chain 1acc in template set Warning: unaligning (T0547)E488 (1acc)L652 because P (beta_P) conformation "forbidden" or filtered. T0547 485 :SDG 1acc 649 :TEG T0547 489 :ISYSK 1acc 653 :KEVIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=103654 # 1yarA.485.152 read from T0547.t06.many.frag # found chain 1yarA in template set T0547 485 :SDGEISYSK 1yarA 153 :PAGTINEYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=103655 # 1sacA.485.100 read from T0547.t06.many.frag # found chain 1sacA in template set T0547 485 :SDGEISYSK 1sacA 101 :SSGIAEFWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=103656 # 1o7jA.485.279 read from T0547.t06.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)S485 (1o7jA)G280 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D486 (1o7jA)N281 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :GEISYSK 1o7jA 282 :GIVPPDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=103657 # 2c4xA.485.36 read from T0547.t06.many.frag # found chain 2c4xA in template set Warning: unaligning (T0547)Y491 (2c4xA)Y40 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEIS 2c4xA 34 :EDGTIA T0547 492 :SK 2c4xA 41 :YV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103659 # 1w0pA.485.337 read from T0547.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)K493 (1w0pA)I346 because E (beta_S) conformation "forbidden" or filtered. T0547 485 :SDGEISYS 1w0pA 338 :ASGNWQAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=103660 # 1t61A.485.177 read from T0547.t06.many.frag # found chain 1t61A in training set Warning: unaligning (T0547)S490 (1t61A)N183 because Y (epsilon') conformation "forbidden" or filtered. T0547 485 :SDGEI 1t61A 178 :GRGTC T0547 491 :YSK 1t61A 184 :YYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=103662 # 1wlgA.485.162 read from T0547.t06.many.frag # found chain 1wlgA in training set Warning: unaligning (T0547)Y491 (1wlgA)S239 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S492 (1wlgA)G240 because T (delta_L) conformation "forbidden" or filtered. T0547 485 :SDGEIS 1wlgA 233 :ENGILE T0547 493 :K 1wlgA 241 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=103664 # 1iicA.486.286 read from T0547.t06.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)D494 (1iicA)S328 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :DGEISYSK 1iicA 320 :DGKITDFF Number of specific fragments extracted= 1 number of extra gaps= 1 total=103665 # 1cqyA.486.71 read from T0547.t06.many.frag # found chain 1cqyA in template set T0547 486 :DGEISYSKD 1cqyA 489 :DGTVKSWQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=103666 # 1xksA.486.172 read from T0547.t06.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)E488 (1xksA)K239 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S492 (1xksA)H243 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1xksA)L245 because P (beta_P) conformation "forbidden" or filtered. T0547 486 :DG 1xksA 237 :SG T0547 489 :ISY 1xksA 240 :IHQ T0547 493 :K 1xksA 244 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=103669 # 1br9.486.171 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)D486 because of BadResidue code BAD_PEPTIDE at template residue (1br9)D172 Warning: unaligning (T0547)S490 (1br9)A176 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :GEI 1br9 173 :GSC T0547 491 :YSKD 1br9 177 :WYRG Number of specific fragments extracted= 2 number of extra gaps= 2 total=103671 # 1yq2A.486.663 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)G487 (1yq2A)G664 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1yq2A)P665 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S492 (1yq2A)G669 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1yq2A)S671 because E (beta_S) conformation "forbidden" or filtered. T0547 486 :D 1yq2A 663 :D T0547 489 :ISY 1yq2A 666 :LRA T0547 493 :K 1yq2A 670 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=103674 # 1rg8A.486.33 read from T0547.t06.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)K493 (1rg8A)R35 because G (3-10) conformation "forbidden" or filtered. T0547 486 :DGEISYS 1rg8A 28 :DGTVDGT T0547 494 :D 1rg8A 36 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=103676 # 1bjt.486.572 read from T0547.t06.many.frag # found chain 1bjt in template set T0547 486 :DGEISYSKD 1bjt 981 :HGKIKKYNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=103677 # 1qopB.486.289 read from T0547.t06.many.frag # found chain 1qopB in training set Warning: unaligning (T0547)D494 (1qopB)S299 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :DGEISYSK 1qopB 291 :DGQIEESY Number of specific fragments extracted= 1 number of extra gaps= 1 total=103678 # 1twfB.486.886 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)E488 (1twfB)T889 because D (zeta) conformation "forbidden" or filtered. T0547 486 :DG 1twfB 887 :HG T0547 489 :ISYSKD 1twfB 890 :YDKLDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=103680 # 1o7iA.486.89 read from T0547.t06.many.frag # found chain 1o7iA in training set Warning: unaligning (T0547)G487 (1o7iA)T91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1o7iA)K92 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1o7iA)S97 because P (beta_P) conformation "forbidden" or filtered. T0547 486 :D 1o7iA 90 :K T0547 489 :ISYS 1o7iA 93 :IAEA T0547 494 :D 1o7iA 98 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=103683 # 1w6gA.486.329 read from T0547.t06.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)K493 (1w6gA)R339 because P (beta_P) conformation "forbidden" or filtered. T0547 486 :DGEISYS 1w6gA 332 :FGNPREI T0547 494 :D 1w6gA 340 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=103685 # 1lm8V.486.38 read from T0547.t06.many.frag # found chain 1lm8V in template set T0547 486 :DGEISYSKD 1lm8V 92 :DGEPQPYPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=103686 # 1rg8A.486.75 read from T0547.t06.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)S490 (1rg8A)Y74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1rg8A)T78 because E (beta_S) conformation "forbidden" or filtered. T0547 486 :DGEI 1rg8A 70 :DGLL T0547 491 :YSK 1rg8A 75 :GSQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=103688 # 1g6xA.486.26 read from T0547.t06.many.frag # found chain 1g6xA in training set Warning: unaligning (T0547)G487 because of BadResidue code BAD_PEPTIDE in next template residue (1g6xA)L29 Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE at template residue (1g6xA)L29 Warning: unaligning (T0547)I489 because of BadResidue code BAD_PEPTIDE at template residue (1g6xA)C30 T0547 486 :D 1g6xA 27 :A T0547 490 :SYSKD 1g6xA 31 :QTFVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=103690 # 1nwzA.486.35 read from T0547.t06.many.frag # found chain 1nwzA in training set T0547 486 :DGEISYSKD 1nwzA 36 :DGNILQYNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=103691 # 1xe7A.486.118 read from T0547.t06.many.frag # found chain 1xe7A in training set T0547 486 :DGEISYSKD 1xe7A 119 :DGQVKSFKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103692 # 1w0pA.486.338 read from T0547.t06.many.frag # found chain 1w0pA in training set T0547 486 :DGEISYSKD 1w0pA 339 :SGNWQAPID Number of specific fragments extracted= 1 number of extra gaps= 0 total=103693 # 2ae0X.486.280 read from T0547.t06.many.frag # found chain 2ae0X in template set T0547 486 :DGEISYSKD 2ae0X 281 :NGKFNGQYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103694 # 1o7jA.486.280 read from T0547.t06.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)D486 (1o7jA)N281 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :GEISYSKD 1o7jA 282 :GIVPPDEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=103695 # 1y08A.486.257 read from T0547.t06.many.frag # found chain 1y08A in template set T0547 486 :DGEISYSKD 1y08A 274 :NGNLKAIYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103696 # 1f60A.486.347 read from T0547.t06.many.frag # found chain 1f60A in training set Warning: unaligning (T0547)D494 (1f60A)S356 because D (zeta) conformation "forbidden" or filtered. T0547 486 :DGEISYSK 1f60A 348 :PGQISAGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=103697 # 2a7bA.486.39 read from T0547.t06.many.frag # found chain 2a7bA in training set Warning: unaligning (T0547)G487 (2a7bA)L743 because E (beta_S) conformation "forbidden" or filtered. T0547 486 :D 2a7bA 742 :E T0547 488 :EISYSKD 2a7bA 744 :DMTDFVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=103699 # 1omhA.486.173 read from T0547.t06.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)S490 (1omhA)R178 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :DGEI 1omhA 174 :DGQW T0547 491 :YSKD 1omhA 179 :ALKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=103701 # 2c4xA.486.37 read from T0547.t06.many.frag # found chain 2c4xA in template set T0547 486 :DGEISYSKD 2c4xA 35 :DGTIAYYVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=103702 # 1yarA.486.153 read from T0547.t06.many.frag # found chain 1yarA in template set T0547 486 :DGEISYSKD 1yarA 154 :AGTINEYKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=103703 # 1wlgA.486.163 read from T0547.t06.many.frag # found chain 1wlgA in training set Warning: unaligning (T0547)Y491 (1wlgA)S239 because Y (epsilon') conformation "forbidden" or filtered. T0547 486 :DGEIS 1wlgA 234 :NGILE T0547 492 :SKD 1wlgA 240 :GGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=103705 # 1pea.486.347 read from T0547.t06.many.frag # found chain 1pea in template set T0547 486 :DGEISYSKD 1pea 348 :RGVFQVRWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=103706 # 1xipA.486.190 read from T0547.t06.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)D486 (1xipA)N190 because L (left) conformation "forbidden" or filtered. T0547 487 :GEISYSKD 1xipA 191 :GEMEKQFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=103707 # 1mkfA.486.325 read from T0547.t06.many.frag # found chain 1mkfA in template set T0547 486 :DGEISYSKD 1mkfA 326 :DGVWTSTSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=103708 # 1t61A.486.178 read from T0547.t06.many.frag # found chain 1t61A in training set T0547 486 :DGEISYSKD 1t61A 179 :RGTCNYYAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=103709 # 1twfB.487.887 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)I489 (1twfB)Y890 because G (3-10) conformation "forbidden" or filtered. T0547 487 :GE 1twfB 888 :GT T0547 490 :SYSKDK 1twfB 891 :DKLDDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=103711 # 1cqyA.487.72 read from T0547.t06.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)E488 (1cqyA)T491 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y491 (1cqyA)S494 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1cqyA)Q496 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :G 1cqyA 490 :G T0547 489 :IS 1cqyA 492 :VK T0547 492 :S 1cqyA 495 :W T0547 494 :DK 1cqyA 497 :TI Number of specific fragments extracted= 4 number of extra gaps= 3 total=103715 # 1yq2A.487.664 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)E488 (1yq2A)P665 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1yq2A)A672 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :G 1yq2A 664 :G T0547 489 :ISYSKD 1yq2A 666 :LRAGES Number of specific fragments extracted= 2 number of extra gaps= 2 total=103717 # 1br9.487.172 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)S490 (1br9)A176 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1br9)G180 because S (epsilon) conformation "forbidden" or filtered. T0547 487 :GEI 1br9 173 :GSC T0547 491 :YSK 1br9 177 :WYR T0547 495 :K 1br9 181 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=103720 # 1rg8A.487.34 read from T0547.t06.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)E488 (1rg8A)T30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1rg8A)D32 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :G 1rg8A 29 :G T0547 489 :I 1rg8A 31 :V T0547 491 :YSKDK 1rg8A 33 :GTRDR Number of specific fragments extracted= 3 number of extra gaps= 2 total=103723 # 1o7iA.487.90 read from T0547.t06.many.frag # found chain 1o7iA in training set Warning: unaligning (T0547)G487 (1o7iA)T91 because P (beta_P) conformation "forbidden" or filtered. T0547 488 :EISYSKDK 1o7iA 92 :KIAEASED Number of specific fragments extracted= 1 number of extra gaps= 1 total=103724 # 1xksA.487.173 read from T0547.t06.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)S492 (1xksA)H243 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :GEISY 1xksA 238 :GKIHQ T0547 493 :KDK 1xksA 244 :ILP Number of specific fragments extracted= 2 number of extra gaps= 1 total=103726 # 1mkfA.487.326 read from T0547.t06.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)E488 (1mkfA)V328 because D (zeta) conformation "forbidden" or filtered. T0547 487 :G 1mkfA 327 :G T0547 489 :ISYSKDK 1mkfA 329 :WTSTSSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=103728 # 1yarA.487.154 read from T0547.t06.many.frag # found chain 1yarA in template set T0547 487 :GEISYSKDK 1yarA 155 :GTINEYKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=103729 # 2msbA.487.59 read from T0547.t06.many.frag # found chain 2msbA in training set T0547 487 :GEISYSKDK 2msbA 166 :GQFMYVTGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=103730 # 1g6xA.487.27 read from T0547.t06.many.frag # found chain 1g6xA in training set Warning: unaligning (T0547)G487 because of BadResidue code BAD_PEPTIDE in next template residue (1g6xA)L29 Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE at template residue (1g6xA)L29 Warning: unaligning (T0547)I489 because of BadResidue code BAD_PEPTIDE at template residue (1g6xA)C30 Warning: unaligning (T0547)S492 (1g6xA)F33 because Y (epsilon') conformation "forbidden" or filtered. T0547 490 :SY 1g6xA 31 :QT T0547 493 :KDK 1g6xA 34 :VYG Number of specific fragments extracted= 2 number of extra gaps= 2 total=103732 # 1iicA.487.287 read from T0547.t06.many.frag # found chain 1iicA in template set Warning: unaligning (T0547)D494 (1iicA)S328 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :GEISYSK 1iicA 321 :GKITDFF T0547 495 :K 1iicA 329 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=103734 # 1o7jA.487.281 read from T0547.t06.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)G487 (1o7jA)G282 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E488 (1o7jA)I283 because P (beta_P) conformation "forbidden" or filtered. T0547 489 :ISYSKDK 1o7jA 284 :VPPDEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=103735 # 1bjt.487.573 read from T0547.t06.many.frag # found chain 1bjt in template set Warning: unaligning (T0547)D494 (1bjt)S989 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :GEISYSK 1bjt 982 :GKIKKYN T0547 495 :K 1bjt 990 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=103737 # 1qopB.487.290 read from T0547.t06.many.frag # found chain 1qopB in training set Warning: unaligning (T0547)D494 (1qopB)S299 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :GEISYSK 1qopB 292 :GQIEESY T0547 495 :K 1qopB 300 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=103739 # 2czrA.487.197 read from T0547.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)E488 (2czrA)K191 because E (beta_S) conformation "forbidden" or filtered. T0547 487 :G 2czrA 190 :G T0547 489 :ISYSKDK 2czrA 192 :VFDKFGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=103741 # 1w6gA.487.330 read from T0547.t06.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)D494 (1w6gA)N340 because L (left) conformation "forbidden" or filtered. T0547 487 :GEISYSK 1w6gA 333 :GNPREIR T0547 495 :K 1w6gA 341 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=103743 # 1w0pA.487.339 read from T0547.t06.many.frag # found chain 1w0pA in training set T0547 487 :GEISYSKDK 1w0pA 340 :GNWQAPIDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103744 # 2a7bA.487.40 read from T0547.t06.many.frag # found chain 2a7bA in training set Warning: unaligning (T0547)Y491 (2a7bA)D747 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S492 (2a7bA)F748 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :GEIS 2a7bA 743 :LDMT T0547 493 :KDK 2a7bA 749 :VFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=103746 # 1wlgA.487.164 read from T0547.t06.many.frag # found chain 1wlgA in training set T0547 487 :GEISYSKDK 1wlgA 235 :GILESGGTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103747 # 1xipA.487.191 read from T0547.t06.many.frag # found chain 1xipA in template set T0547 487 :GEISYSKDK 1xipA 191 :GEMEKQFEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=103748 # 1lm8V.487.39 read from T0547.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)K493 (1lm8V)P99 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :GEISYS 1lm8V 93 :GEPQPY T0547 494 :DK 1lm8V 100 :TL Number of specific fragments extracted= 2 number of extra gaps= 1 total=103750 # 1rg8A.487.76 read from T0547.t06.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)E488 (1rg8A)L72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S490 (1rg8A)Y74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1rg8A)T78 because E (beta_S) conformation "forbidden" or filtered. T0547 487 :G 1rg8A 71 :G T0547 489 :I 1rg8A 73 :L T0547 491 :YSK 1rg8A 75 :GSQ T0547 495 :K 1rg8A 79 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=103754 # 4bcl.487.320 read from T0547.t06.many.frag # found chain 4bcl in template set Warning: unaligning (T0547)D494 (4bcl)P328 because C (cis) conformation "forbidden" or filtered. T0547 487 :GEISYSK 4bcl 321 :YKIRYAA T0547 495 :K 4bcl 329 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=103756 # 1ylxA.487.68 read from T0547.t06.many.frag # found chain 1ylxA in training set Warning: unaligning (T0547)E488 (1ylxA)E67 because P (beta_P) conformation "forbidden" or filtered. T0547 487 :G 1ylxA 66 :G T0547 489 :ISYSKDK 1ylxA 68 :LALEKQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=103758 # 1ou8A.487.97 read from T0547.t06.many.frag # found chain 1ou8A in training set Warning: unaligning (T0547)I489 (1ou8A)G100 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :GE 1ou8A 98 :GD T0547 490 :SYSKDK 1ou8A 101 :VMFEPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=103760 # 1acc.487.650 read from T0547.t06.many.frag # found chain 1acc in template set T0547 487 :GEISYSKDK 1acc 651 :GLKEVINDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=103761 # 1t61A.487.179 read from T0547.t06.many.frag # found chain 1t61A in training set T0547 487 :GEISYSKDK 1t61A 180 :GTCNYYANA Number of specific fragments extracted= 1 number of extra gaps= 0 total=103762 # 1pl3A.487.90 read from T0547.t06.many.frag # found chain 1pl3A in template set T0547 487 :GEISYSKDK 1pl3A 91 :VQPTAYTGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=103763 # 1zupA.487.93 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)T84 Warning: unaligning (T0547)I489 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)T84 Warning: unaligning (T0547)K493 (1zupA)F88 because Y (epsilon') conformation "forbidden" or filtered. T0547 487 :G 1zupA 82 :G T0547 490 :SYS 1zupA 85 :KTL T0547 494 :DK 1zupA 89 :SP Number of specific fragments extracted= 3 number of extra gaps= 2 total=103766 # 1twfB.488.888 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)E488 (1twfB)T889 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)S492 (1twfB)L893 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1twfB)G897 because L (left) conformation "forbidden" or filtered. T0547 489 :ISY 1twfB 890 :YDK T0547 493 :KDK 1twfB 894 :DDD Number of specific fragments extracted= 2 number of extra gaps= 3 total=103768 # 1cqyA.488.73 read from T0547.t06.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)E488 (1cqyA)T491 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1cqyA)Q496 because P (beta_P) conformation "forbidden" or filtered. T0547 489 :ISYS 1cqyA 492 :VKSW T0547 494 :DKP 1cqyA 497 :TIQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=103770 # 1yq2A.488.665 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)K493 (1yq2A)E670 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1yq2A)A672 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1yq2A)T673 because E (beta_S) conformation "forbidden" or filtered. T0547 488 :EISYS 1yq2A 665 :PLRAG T0547 494 :D 1yq2A 671 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=103772 # 1br9.488.173 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)P496 because last residue in template chain is (1br9)A182 T0547 488 :EISYSKDK 1br9 174 :SCAWYRGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=103773 # 2msbA.488.60 read from T0547.t06.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)D494 (2msbA)G173 because S (epsilon) conformation "forbidden" or filtered. T0547 488 :EISYSK 2msbA 167 :QFMYVT T0547 495 :KP 2msbA 174 :GR Number of specific fragments extracted= 2 number of extra gaps= 1 total=103775 # 1rg8A.488.35 read from T0547.t06.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)P496 (1rg8A)S38 because G (3-10) conformation "forbidden" or filtered. T0547 488 :EISYSKDK 1rg8A 30 :TVDGTRDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=103776 # 2czrA.488.198 read from T0547.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)D494 (2czrA)G197 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (2czrA)G198 because P (beta_P) conformation "forbidden" or filtered. T0547 488 :EISYSK 2czrA 191 :KVFDKF T0547 496 :P 2czrA 199 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=103778 # 1mkfA.488.327 read from T0547.t06.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)E488 (1mkfA)V328 because D (zeta) conformation "forbidden" or filtered. T0547 489 :ISYSKDKP 1mkfA 329 :WTSTSSEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=103779 # 1o7iA.488.91 read from T0547.t06.many.frag # found chain 1o7iA in training set Warning: unaligning (T0547)P496 (1o7iA)G100 because T (delta_L) conformation "forbidden" or filtered. T0547 488 :EISYSKDK 1o7iA 92 :KIAEASED Number of specific fragments extracted= 1 number of extra gaps= 1 total=103780 # 1g6xA.488.28 read from T0547.t06.many.frag # found chain 1g6xA in training set Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE at template residue (1g6xA)L29 Warning: unaligning (T0547)I489 because of BadResidue code BAD_PEPTIDE at template residue (1g6xA)C30 Warning: unaligning (T0547)S492 (1g6xA)F33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1g6xA)G37 because T (delta_L) conformation "forbidden" or filtered. T0547 490 :SY 1g6xA 31 :QT T0547 493 :KDK 1g6xA 34 :VYG Number of specific fragments extracted= 2 number of extra gaps= 3 total=103782 # 1k8kC.488.1 read from T0547.t06.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)E488 because first residue in template chain is (1k8kC)A2 Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)I11 T0547 489 :ISYSKDK 1k8kC 3 :YHSFLVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=103783 # 1acc.488.651 read from T0547.t06.many.frag # found chain 1acc in template set T0547 488 :EISYSKDKP 1acc 652 :LKEVINDRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=103784 # 2a7bA.488.41 read from T0547.t06.many.frag # found chain 2a7bA in training set Warning: unaligning (T0547)P496 (2a7bA)A752 because E (beta_S) conformation "forbidden" or filtered. T0547 488 :EISYSKDK 2a7bA 744 :DMTDFVFQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=103785 # 1pl3A.488.91 read from T0547.t06.many.frag # found chain 1pl3A in template set Warning: unaligning (T0547)P496 (1pl3A)A100 because E (beta_S) conformation "forbidden" or filtered. T0547 488 :EISYSKDK 1pl3A 92 :QPTAYTGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=103786 # 1xipA.488.192 read from T0547.t06.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)E488 (1xipA)E192 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1xipA)F197 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1xipA)F199 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1xipA)S200 because E (beta_S) conformation "forbidden" or filtered. T0547 489 :ISYS 1xipA 193 :MEKQ T0547 494 :D 1xipA 198 :E Number of specific fragments extracted= 2 number of extra gaps= 3 total=103788 # 1o7jA.488.282 read from T0547.t06.many.frag # found chain 1o7jA in training set T0547 488 :EISYSKDKP 1o7jA 283 :IVPPDEELP Number of specific fragments extracted= 1 number of extra gaps= 0 total=103789 # 1pg6A.488.91 read from T0547.t06.many.frag # found chain 1pg6A in training set T0547 488 :EISYSKDKP 1pg6A 85 :KLALAPNTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=103790 # 1utcA.488.189 read from T0547.t06.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)D494 (1utcA)G196 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1utcA)A198 because E (beta_S) conformation "forbidden" or filtered. T0547 488 :EISYSK 1utcA 190 :VSQPIE T0547 495 :K 1utcA 197 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=103792 # 1zupA.488.94 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)E488 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)T84 Warning: unaligning (T0547)I489 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)T84 Warning: unaligning (T0547)D494 (1zupA)S89 because Y (epsilon') conformation "forbidden" or filtered. T0547 490 :SYSK 1zupA 85 :KTLF T0547 495 :KP 1zupA 90 :PD Number of specific fragments extracted= 2 number of extra gaps= 2 total=103794 # 1yarA.488.155 read from T0547.t06.many.frag # found chain 1yarA in template set Warning: unaligning (T0547)D494 (1yarA)A162 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1yarA)T163 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1yarA)A164 because E (beta_S) conformation "forbidden" or filtered. T0547 488 :EISYSK 1yarA 156 :TINEYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=103795 # 1yu0A.488.88 read from T0547.t06.many.frag # found chain 1yu0A in training set T0547 488 :EISYSKDKP 1yu0A 89 :LVQFTADTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=103796 # 1xksA.488.174 read from T0547.t06.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)S492 (1xksA)H243 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1xksA)P246 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1xksA)Q247 because L (left) conformation "forbidden" or filtered. T0547 488 :EISY 1xksA 239 :KIHQ T0547 493 :KD 1xksA 244 :IL Number of specific fragments extracted= 2 number of extra gaps= 2 total=103798 # 1vp6A.488.61 read from T0547.t06.many.frag # found chain 1vp6A in training set T0547 488 :EISYSKDKP 1vp6A 279 :SVSVATPNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=103799 # 1w6gA.488.331 read from T0547.t06.many.frag # found chain 1w6gA in training set Warning: unaligning (T0547)P496 (1w6gA)I342 because E (beta_S) conformation "forbidden" or filtered. T0547 488 :EISYSKDK 1w6gA 334 :NPREIRNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=103800 # 2bwrA.488.317 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)E488 (2bwrA)P318 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (2bwrA)N325 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2bwrA)F326 because T (delta_L) conformation "forbidden" or filtered. T0547 489 :ISYSKD 2bwrA 319 :VKRVID Number of specific fragments extracted= 1 number of extra gaps= 2 total=103801 # 1hufA.488.34 read from T0547.t06.many.frag # found chain 1hufA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hufA)E36 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hufA)E36 T0547 488 :EISYS 1hufA 30 :NVAAN T0547 495 :KP 1hufA 37 :TT Number of specific fragments extracted= 2 number of extra gaps= 1 total=103803 # 1vcc.488.66 read from T0547.t06.many.frag # found chain 1vcc in training set Warning: unaligning (T0547)E488 (1vcc)R67 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1vcc)M75 because G (3-10) conformation "forbidden" or filtered. T0547 489 :ISYSKDK 1vcc 68 :RQYFYGK Number of specific fragments extracted= 1 number of extra gaps= 2 total=103804 # 1w4sA.488.137 read from T0547.t06.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)K495 (1w4sA)W1074 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. T0547 488 :EISYSKD 1w4sA 1067 :SFKKIKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=103805 # 1wlgA.488.165 read from T0547.t06.many.frag # found chain 1wlgA in training set T0547 488 :EISYSKDKP 1wlgA 236 :ILESGGTVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=103806 # 2c43A.488.296 read from T0547.t06.many.frag # found chain 2c43A in template set Warning: unaligning (T0547)K493 (2c43A)W302 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (2c43A)D303 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2c43A)F305 because E (beta_S) conformation "forbidden" or filtered. T0547 488 :EISYS 2c43A 297 :EDPSF T0547 495 :K 2c43A 304 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=103808 # 1twfB.489.889 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)I489 (1twfB)Y890 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y491 (1twfB)K892 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1twfB)G897 because L (left) conformation "forbidden" or filtered. T0547 490 :S 1twfB 891 :D T0547 492 :SKDK 1twfB 893 :LDDD T0547 497 :L 1twfB 898 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=103811 # 1cqyA.489.74 read from T0547.t06.many.frag # found chain 1cqyA in template set T0547 489 :ISYSKDKPL 1cqyA 492 :VKSWQTIQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=103812 # 1yq2A.489.666 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)S492 (1yq2A)G669 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1yq2A)E670 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1yq2A)S671 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1yq2A)A672 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1yq2A)T673 because E (beta_S) conformation "forbidden" or filtered. T0547 489 :ISY 1yq2A 666 :LRA T0547 497 :L 1yq2A 674 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=103814 # 2msbA.489.61 read from T0547.t06.many.frag # found chain 2msbA in training set T0547 489 :ISYSKDKPL 2msbA 168 :FMYVTGGRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=103815 # 1acc.489.652 read from T0547.t06.many.frag # found chain 1acc in template set Warning: unaligning (T0547)K493 (1acc)N657 because N (gamma') conformation "forbidden" or filtered. T0547 489 :ISYS 1acc 653 :KEVI T0547 494 :DKPL 1acc 658 :DRYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=103817 # 1yu0A.489.89 read from T0547.t06.many.frag # found chain 1yu0A in training set T0547 489 :ISYSKDKPL 1yu0A 90 :VQFTADTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=103818 # 1k8kC.489.2 read from T0547.t06.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)I11 Warning: unaligning (T0547)L497 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)I11 T0547 489 :ISYSKDK 1k8kC 3 :YHSFLVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=103819 # 2bwrA.489.318 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)K495 (2bwrA)N325 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2bwrA)F326 because T (delta_L) conformation "forbidden" or filtered. T0547 489 :ISYSKD 2bwrA 319 :VKRVID T0547 497 :L 2bwrA 327 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=103821 # 1pg6A.489.92 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)K495 (1pg6A)T92 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 489 :ISYSKD 1pg6A 86 :LALAPN T0547 496 :P 1pg6A 93 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=103823 # 2czrA.489.199 read from T0547.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)K493 (2czrA)F196 because G (3-10) conformation "forbidden" or filtered. T0547 489 :ISYS 2czrA 192 :VFDK T0547 494 :DKPL 2czrA 197 :GGEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103825 # 1br9.489.174 read from T0547.t06.many.frag # found chain 1br9 in template set Warning: unaligning (T0547)S490 (1br9)A176 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 because last residue in template chain is (1br9)A182 T0547 489 :I 1br9 175 :C T0547 491 :YSKDK 1br9 177 :WYRGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=103827 # 1g6xA.489.29 read from T0547.t06.many.frag # found chain 1g6xA in training set Warning: unaligning (T0547)I489 because of BadResidue code BAD_PEPTIDE at template residue (1g6xA)C30 Warning: unaligning (T0547)S492 (1g6xA)F33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1g6xA)V34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1g6xA)G37 because T (delta_L) conformation "forbidden" or filtered. T0547 490 :SY 1g6xA 31 :QT T0547 494 :DK 1g6xA 35 :YG T0547 497 :L 1g6xA 38 :C Number of specific fragments extracted= 3 number of extra gaps= 3 total=103830 # 1w4sA.489.138 read from T0547.t06.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)S492 (1w4sA)I1071 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. T0547 489 :ISY 1w4sA 1068 :FKK T0547 493 :KDK 1w4sA 1072 :KLW T0547 497 :L 1w4sA 1076 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=103833 # 1vp6A.489.62 read from T0547.t06.many.frag # found chain 1vp6A in training set T0547 489 :ISYSKDKPL 1vp6A 280 :VSVATPNPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=103834 # 1mkfA.489.328 read from T0547.t06.many.frag # found chain 1mkfA in template set T0547 489 :ISYSKDKPL 1mkfA 329 :WTSTSSEQC Number of specific fragments extracted= 1 number of extra gaps= 0 total=103835 # 1pl3A.489.92 read from T0547.t06.many.frag # found chain 1pl3A in template set Warning: unaligning (T0547)P496 (1pl3A)A100 because E (beta_S) conformation "forbidden" or filtered. T0547 489 :ISYSKDK 1pl3A 93 :PTAYTGT T0547 497 :L 1pl3A 101 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=103837 # 1rg8A.489.36 read from T0547.t06.many.frag # found chain 1rg8A in training set Warning: unaligning (T0547)P496 (1rg8A)S38 because G (3-10) conformation "forbidden" or filtered. T0547 489 :ISYSKDK 1rg8A 31 :VDGTRDR T0547 497 :L 1rg8A 39 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=103839 # 1mspA.489.8 read from T0547.t06.many.frag # found chain 1mspA in template set Warning: unaligning (T0547)K493 (1mspA)P13 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1mspA)K16 because Y (epsilon') conformation "forbidden" or filtered. T0547 489 :ISYS 1mspA 9 :INTQ T0547 494 :DK 1mspA 14 :SQ T0547 497 :L 1mspA 17 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=103842 # 1hufA.489.35 read from T0547.t06.many.frag # found chain 1hufA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hufA)E36 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hufA)E36 T0547 489 :ISYS 1hufA 31 :VAAN T0547 495 :KPL 1hufA 37 :TTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=103844 # 1o7iA.489.92 read from T0547.t06.many.frag # found chain 1o7iA in training set Warning: unaligning (T0547)P496 (1o7iA)G100 because T (delta_L) conformation "forbidden" or filtered. T0547 489 :ISYSKDK 1o7iA 93 :IAEASED T0547 497 :L 1o7iA 101 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=103846 # 1vcc.489.67 read from T0547.t06.many.frag # found chain 1vcc in training set Warning: unaligning (T0547)P496 (1vcc)M75 because G (3-10) conformation "forbidden" or filtered. T0547 489 :ISYSKDK 1vcc 68 :RQYFYGK T0547 497 :L 1vcc 76 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=103848 # 1ntyA.489.245 read from T0547.t06.many.frag # found chain 1ntyA in training set Warning: unaligning (T0547)S490 (1ntyA)K1471 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1ntyA)S1476 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1ntyA)K1477 because E (beta_S) conformation "forbidden" or filtered. T0547 489 :I 1ntyA 1470 :S T0547 491 :YSKD 1ntyA 1472 :YLYK T0547 497 :L 1ntyA 1478 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=103851 # 1utcA.489.190 read from T0547.t06.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)P496 (1utcA)A198 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1utcA)A199 because Y (epsilon') conformation "forbidden" or filtered. T0547 489 :ISYSKDK 1utcA 191 :SQPIEGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=103852 # 1xipA.489.193 read from T0547.t06.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)K495 (1xipA)F199 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1xipA)S200 because E (beta_S) conformation "forbidden" or filtered. T0547 489 :ISYSKD 1xipA 193 :MEKQFE T0547 497 :L 1xipA 201 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=103854 # 2ffeA.489.227 read from T0547.t06.many.frag # found chain 2ffeA in template set Warning: unaligning (T0547)S490 (2ffeA)S229 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2ffeA)L235 because G (3-10) conformation "forbidden" or filtered. T0547 489 :I 2ffeA 228 :V T0547 491 :YSKDK 2ffeA 230 :GPAGK T0547 497 :L 2ffeA 236 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=103857 # 2c43A.489.297 read from T0547.t06.many.frag # found chain 2c43A in template set Warning: unaligning (T0547)S492 (2c43A)F301 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2c43A)F305 because E (beta_S) conformation "forbidden" or filtered. T0547 489 :ISY 2c43A 298 :DPS T0547 493 :KDK 2c43A 302 :WDC T0547 497 :L 2c43A 306 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=103860 # 1dmlA.489.209 read from T0547.t06.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)S492 (1dmlA)F213 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1dmlA)T214 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1dmlA)T217 because E (beta_S) conformation "forbidden" or filtered. T0547 489 :ISY 1dmlA 210 :FSV T0547 494 :DK 1dmlA 215 :TS T0547 497 :L 1dmlA 218 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=103863 # 1m9zA.489.64 read from T0547.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)P496 (1m9zA)T97 because E (beta_S) conformation "forbidden" or filtered. T0547 489 :ISYSKDK 1m9zA 90 :LEDAASP T0547 497 :L 1m9zA 98 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=103865 # 1zupA.489.95 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)I489 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)T84 Warning: unaligning (T0547)K493 (1zupA)F88 because Y (epsilon') conformation "forbidden" or filtered. T0547 490 :SYS 1zupA 85 :KTL T0547 494 :DKPL 1zupA 89 :SPDK Number of specific fragments extracted= 2 number of extra gaps= 2 total=103867 # 1lmiA.489.27 read from T0547.t06.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)Y491 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1lmiA)K32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1lmiA)T35 because G (3-10) conformation "forbidden" or filtered. T0547 489 :IS 1lmiA 28 :VS T0547 492 :S 1lmiA 31 :L T0547 494 :DK 1lmiA 33 :SS T0547 497 :L 1lmiA 36 :A Number of specific fragments extracted= 4 number of extra gaps= 3 total=103871 # 1twfB.490.890 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)K495 (1twfB)D896 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1twfB)G897 because L (left) conformation "forbidden" or filtered. T0547 490 :SYSKD 1twfB 891 :DKLDD T0547 497 :LF 1twfB 898 :LI Number of specific fragments extracted= 2 number of extra gaps= 1 total=103873 # 1yq2A.490.667 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)K495 (1yq2A)A672 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1yq2A)T673 because E (beta_S) conformation "forbidden" or filtered. T0547 490 :SYSKD 1yq2A 667 :RAGES T0547 497 :LF 1yq2A 674 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=103875 # 1yu0A.490.90 read from T0547.t06.many.frag # found chain 1yu0A in training set T0547 490 :SYSKDKPLF 1yu0A 91 :QFTADTAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=103876 # 1cqyA.490.75 read from T0547.t06.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)Y491 (1cqyA)S494 because Y (epsilon') conformation "forbidden" or filtered. T0547 490 :S 1cqyA 493 :K T0547 492 :SKDKPLF 1cqyA 495 :WQTIQQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=103878 # 2msbA.490.62 read from T0547.t06.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)K493 (2msbA)T172 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (2msbA)G173 because S (epsilon) conformation "forbidden" or filtered. T0547 490 :SYS 2msbA 169 :MYV T0547 495 :KPLF 2msbA 174 :GRLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=103880 # 2czrA.490.200 read from T0547.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)D494 (2czrA)G197 because T (delta_L) conformation "forbidden" or filtered. T0547 490 :SYSK 2czrA 193 :FDKF T0547 495 :KPLF 2czrA 198 :GEVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=103882 # 1k8kC.490.3 read from T0547.t06.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)I11 Warning: unaligning (T0547)L497 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)I11 T0547 490 :SYSKDK 1k8kC 4 :HSFLVE T0547 498 :F 1k8kC 12 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=103884 # 1pg6A.490.93 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)L497 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 490 :SYSKDKP 1pg6A 87 :ALAPNTP T0547 498 :F 1pg6A 95 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=103886 # 1m9zA.490.65 read from T0547.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)P496 (1m9zA)T97 because E (beta_S) conformation "forbidden" or filtered. T0547 490 :SYSKDK 1m9zA 91 :EDAASP T0547 497 :LF 1m9zA 98 :CI Number of specific fragments extracted= 2 number of extra gaps= 1 total=103888 # 2ffeA.490.228 read from T0547.t06.many.frag # found chain 2ffeA in template set Warning: unaligning (T0547)P496 (2ffeA)L235 because G (3-10) conformation "forbidden" or filtered. T0547 490 :SYSKDK 2ffeA 229 :SGPAGK T0547 497 :LF 2ffeA 236 :MP Number of specific fragments extracted= 2 number of extra gaps= 1 total=103890 # 2bwrA.490.319 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)K495 (2bwrA)N325 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2bwrA)F326 because T (delta_L) conformation "forbidden" or filtered. T0547 490 :SYSKD 2bwrA 320 :KRVID T0547 497 :LF 2bwrA 327 :GY Number of specific fragments extracted= 2 number of extra gaps= 1 total=103892 # 1mspA.490.9 read from T0547.t06.many.frag # found chain 1mspA in template set Warning: unaligning (T0547)K493 (1mspA)P13 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1mspA)Q15 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1mspA)K16 because Y (epsilon') conformation "forbidden" or filtered. T0547 490 :SYS 1mspA 10 :NTQ T0547 494 :D 1mspA 14 :S T0547 497 :LF 1mspA 17 :IV Number of specific fragments extracted= 3 number of extra gaps= 2 total=103895 # 1acc.490.653 read from T0547.t06.many.frag # found chain 1acc in template set T0547 490 :SYSKDKPLF 1acc 654 :EVINDRYDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=103896 # 1w4sA.490.139 read from T0547.t06.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. T0547 490 :SYSKDK 1w4sA 1069 :KKIKLW T0547 497 :LF 1w4sA 1076 :MP Number of specific fragments extracted= 2 number of extra gaps= 1 total=103898 # 1g6xA.490.30 read from T0547.t06.many.frag # found chain 1g6xA in training set Warning: unaligning (T0547)S492 (1g6xA)F33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1g6xA)G37 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1g6xA)R39 because L (left) conformation "forbidden" or filtered. T0547 490 :SY 1g6xA 31 :QT T0547 493 :KDK 1g6xA 34 :VYG T0547 497 :L 1g6xA 38 :C Number of specific fragments extracted= 3 number of extra gaps= 3 total=103901 # 1vp6A.490.63 read from T0547.t06.many.frag # found chain 1vp6A in training set T0547 490 :SYSKDKPLF 1vp6A 281 :SVATPNPVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=103902 # 1hufA.490.36 read from T0547.t06.many.frag # found chain 1hufA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hufA)E36 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hufA)E36 T0547 490 :SYS 1hufA 32 :AAN T0547 495 :KPLF 1hufA 37 :TTFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=103904 # 1ntyA.490.246 read from T0547.t06.many.frag # found chain 1ntyA in training set Warning: unaligning (T0547)K493 (1ntyA)Y1474 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1ntyA)S1476 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1ntyA)K1477 because E (beta_S) conformation "forbidden" or filtered. T0547 490 :SYS 1ntyA 1471 :KYL T0547 494 :D 1ntyA 1475 :K T0547 497 :LF 1ntyA 1478 :LF Number of specific fragments extracted= 3 number of extra gaps= 2 total=103907 # 1z6fA.490.310 read from T0547.t06.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)Y491 (1z6fA)Y312 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1z6fA)S316 because E (beta_S) conformation "forbidden" or filtered. T0547 490 :S 1z6fA 311 :S T0547 492 :SKD 1z6fA 313 :VLN T0547 496 :PLF 1z6fA 317 :SEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=103910 # 1lmiA.490.28 read from T0547.t06.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)Y491 (1lmiA)D30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1lmiA)T35 because G (3-10) conformation "forbidden" or filtered. T0547 490 :S 1lmiA 29 :S T0547 492 :SKDK 1lmiA 31 :LKSS T0547 497 :LF 1lmiA 36 :AV Number of specific fragments extracted= 3 number of extra gaps= 2 total=103913 # 1xipA.490.194 read from T0547.t06.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)D494 (1xipA)E198 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1xipA)F199 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1xipA)S200 because E (beta_S) conformation "forbidden" or filtered. T0547 490 :SYSK 1xipA 194 :EKQF T0547 497 :LF 1xipA 201 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=103915 # 1qg3A.490.150 read from T0547.t06.many.frag # found chain 1qg3A in template set Warning: unaligning (T0547)P496 (1qg3A)M1282 because E (beta_S) conformation "forbidden" or filtered. T0547 490 :SYSKDK 1qg3A 1276 :DNPKNR T0547 497 :LF 1qg3A 1283 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=103917 # 1mkfA.490.329 read from T0547.t06.many.frag # found chain 1mkfA in template set Warning: unaligning (T0547)D494 (1mkfA)S334 because E (beta_S) conformation "forbidden" or filtered. T0547 490 :SYSK 1mkfA 330 :TSTS T0547 495 :KPLF 1mkfA 335 :EQCP Number of specific fragments extracted= 2 number of extra gaps= 1 total=103919 # 1iq4A.490.128 read from T0547.t06.many.frag # found chain 1iq4A in training set T0547 490 :SYSKDKPLF 1iq4A 129 :TLGIKEQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=103920 # 1sdeA.490.87 read from T0547.t06.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)D494 (1sdeA)P92 because P (beta_P) conformation "forbidden" or filtered. T0547 490 :SYSK 1sdeA 88 :NTYL T0547 495 :KPLF 1sdeA 93 :GLLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=103922 # 1o7iA.490.93 read from T0547.t06.many.frag # found chain 1o7iA in training set Warning: unaligning (T0547)K493 (1o7iA)S97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1o7iA)G100 because T (delta_L) conformation "forbidden" or filtered. T0547 490 :SYS 1o7iA 94 :AEA T0547 494 :DK 1o7iA 98 :ED T0547 497 :LF 1o7iA 101 :FP Number of specific fragments extracted= 3 number of extra gaps= 2 total=103925 # 1utcA.490.191 read from T0547.t06.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)D494 (1utcA)G196 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1utcA)A198 because E (beta_S) conformation "forbidden" or filtered. T0547 490 :SYSK 1utcA 192 :QPIE T0547 495 :K 1utcA 197 :H T0547 497 :LF 1utcA 199 :AS Number of specific fragments extracted= 3 number of extra gaps= 2 total=103928 # 1pl3A.490.93 read from T0547.t06.many.frag # found chain 1pl3A in template set Warning: unaligning (T0547)P496 (1pl3A)A100 because E (beta_S) conformation "forbidden" or filtered. T0547 490 :SYSKDK 1pl3A 94 :TAYTGT T0547 497 :LF 1pl3A 101 :TL Number of specific fragments extracted= 2 number of extra gaps= 1 total=103930 # 1vcc.490.68 read from T0547.t06.many.frag # found chain 1vcc in training set Warning: unaligning (T0547)D494 (1vcc)G73 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1vcc)M75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 because last residue in template chain is (1vcc)V77 T0547 490 :SYSK 1vcc 69 :QYFY T0547 495 :K 1vcc 74 :K T0547 497 :L 1vcc 76 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=103933 # 1gycA.490.177 read from T0547.t06.many.frag # found chain 1gycA in template set T0547 490 :SYSKDKPLF 1gycA 178 :ASTPTAALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=103934 # 1twfB.491.891 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)Y491 (1twfB)K892 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1twfB)G897 because L (left) conformation "forbidden" or filtered. T0547 492 :SKDK 1twfB 893 :LDDD T0547 497 :LFL 1twfB 898 :LIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=103936 # 1yq2A.491.668 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)S492 (1yq2A)G669 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1yq2A)A672 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1yq2A)T673 because E (beta_S) conformation "forbidden" or filtered. T0547 491 :Y 1yq2A 668 :A T0547 493 :KD 1yq2A 670 :ES T0547 497 :LFL 1yq2A 674 :IAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=103939 # 1yu0A.491.91 read from T0547.t06.many.frag # found chain 1yu0A in training set T0547 491 :YSKDKPLFL 1yu0A 92 :FTADTAITM Number of specific fragments extracted= 1 number of extra gaps= 0 total=103940 # 1pg6A.491.94 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)K495 (1pg6A)T92 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 491 :YSKD 1pg6A 88 :LAPN T0547 496 :P 1pg6A 93 :P T0547 498 :FL 1pg6A 95 :QI Number of specific fragments extracted= 3 number of extra gaps= 2 total=103943 # 1m9zA.491.66 read from T0547.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)P496 (1m9zA)T97 because E (beta_S) conformation "forbidden" or filtered. T0547 491 :YSKDK 1m9zA 92 :DAASP T0547 497 :LFL 1m9zA 98 :CIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=103945 # 1cqyA.491.76 read from T0547.t06.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)Y491 (1cqyA)S494 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1cqyA)Q496 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1cqyA)S501 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :S 1cqyA 495 :W T0547 494 :DKPL 1cqyA 497 :TIQQ T0547 499 :L 1cqyA 502 :W Number of specific fragments extracted= 3 number of extra gaps= 3 total=103948 # 2msbA.491.63 read from T0547.t06.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)K495 (2msbA)G174 because S (epsilon) conformation "forbidden" or filtered. T0547 491 :YSKD 2msbA 170 :YVTG T0547 496 :PLFL 2msbA 175 :RLTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=103950 # 2ffeA.491.229 read from T0547.t06.many.frag # found chain 2ffeA in template set Warning: unaligning (T0547)P496 (2ffeA)L235 because G (3-10) conformation "forbidden" or filtered. T0547 491 :YSKDK 2ffeA 230 :GPAGK T0547 497 :LFL 2ffeA 236 :MPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=103952 # 2czrA.491.201 read from T0547.t06.many.frag # found chain 2czrA in template set T0547 491 :YSKDKPLFL 2czrA 194 :DKFGGEVPM Number of specific fragments extracted= 1 number of extra gaps= 0 total=103953 # 1k8kC.491.4 read from T0547.t06.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)I11 Warning: unaligning (T0547)L497 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)I11 T0547 491 :YSKDK 1k8kC 5 :SFLVE T0547 498 :FL 1k8kC 12 :SC Number of specific fragments extracted= 2 number of extra gaps= 1 total=103955 # 1qg3A.491.151 read from T0547.t06.many.frag # found chain 1qg3A in template set Warning: unaligning (T0547)P496 (1qg3A)M1282 because E (beta_S) conformation "forbidden" or filtered. T0547 491 :YSKDK 1qg3A 1277 :NPKNR T0547 497 :LFL 1qg3A 1283 :LLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=103957 # 1w4sA.491.140 read from T0547.t06.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)D494 (1w4sA)L1073 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. T0547 491 :YSK 1w4sA 1070 :KIK T0547 495 :K 1w4sA 1074 :W T0547 497 :LFL 1w4sA 1076 :MPV Number of specific fragments extracted= 3 number of extra gaps= 2 total=103960 # 2bwrA.491.320 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)K495 (2bwrA)N325 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2bwrA)F326 because T (delta_L) conformation "forbidden" or filtered. T0547 491 :YSKD 2bwrA 321 :RVID T0547 497 :LFL 2bwrA 327 :GYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=103962 # 1mspA.491.10 read from T0547.t06.many.frag # found chain 1mspA in template set Warning: unaligning (T0547)K493 (1mspA)P13 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1mspA)K16 because Y (epsilon') conformation "forbidden" or filtered. T0547 491 :YS 1mspA 11 :TQ T0547 494 :DK 1mspA 14 :SQ T0547 497 :LFL 1mspA 17 :IVF Number of specific fragments extracted= 3 number of extra gaps= 2 total=103965 # 1ntyA.491.247 read from T0547.t06.many.frag # found chain 1ntyA in training set Warning: unaligning (T0547)K493 (1ntyA)Y1474 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1ntyA)S1476 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1ntyA)K1477 because E (beta_S) conformation "forbidden" or filtered. T0547 491 :YS 1ntyA 1472 :YL T0547 494 :D 1ntyA 1475 :K T0547 497 :LFL 1ntyA 1478 :LFT Number of specific fragments extracted= 3 number of extra gaps= 2 total=103968 # 1vp6A.491.64 read from T0547.t06.many.frag # found chain 1vp6A in training set T0547 491 :YSKDKPLFL 1vp6A 282 :VATPNPVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=103969 # 1gycA.491.178 read from T0547.t06.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)S492 (1gycA)T180 because D (zeta) conformation "forbidden" or filtered. T0547 491 :Y 1gycA 179 :S T0547 493 :KDKPLFL 1gycA 181 :PTAALAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103971 # 1acc.491.654 read from T0547.t06.many.frag # found chain 1acc in template set Warning: unaligning (T0547)K495 (1acc)R659 because E (beta_S) conformation "forbidden" or filtered. T0547 491 :YSKD 1acc 655 :VIND T0547 496 :PLFL 1acc 660 :YDML Number of specific fragments extracted= 2 number of extra gaps= 1 total=103973 # 1hufA.491.37 read from T0547.t06.many.frag # found chain 1hufA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hufA)E36 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hufA)E36 Warning: unaligning (T0547)L499 (1hufA)G41 because L (left) conformation "forbidden" or filtered. T0547 491 :YS 1hufA 33 :AN T0547 495 :KPLF 1hufA 37 :TTFQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=103975 # 1lmiA.491.29 read from T0547.t06.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)S492 (1lmiA)L31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K493 (1lmiA)K32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1lmiA)S34 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1lmiA)T35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L499 because of BadResidue code BAD_PEPTIDE in next template residue (1lmiA)P39 T0547 491 :Y 1lmiA 30 :D T0547 494 :D 1lmiA 33 :S T0547 497 :LF 1lmiA 36 :AV Number of specific fragments extracted= 3 number of extra gaps= 3 total=103978 # 1ssxA.491.79 read from T0547.t06.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)K493 (1ssxA)G120E because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1ssxA)S120H because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1ssxA)F120I because E (beta_S) conformation "forbidden" or filtered. T0547 491 :YS 1ssxA 120C:AN T0547 494 :D 1ssxA 120G:S T0547 497 :LFL 1ssxA 120J:VTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=103981 # 1n12A.491.86 read from T0547.t06.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)S492 (1n12A)T99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1n12A)G101 because T (delta_L) conformation "forbidden" or filtered. T0547 491 :Y 1n12A 98 :I T0547 493 :K 1n12A 100 :L T0547 495 :KPLFL 1n12A 102 :TPFTP Number of specific fragments extracted= 3 number of extra gaps= 2 total=103984 # 1utcA.491.192 read from T0547.t06.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)D494 (1utcA)G196 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1utcA)A198 because E (beta_S) conformation "forbidden" or filtered. T0547 491 :YSK 1utcA 193 :PIE T0547 495 :K 1utcA 197 :H T0547 497 :LFL 1utcA 199 :ASF Number of specific fragments extracted= 3 number of extra gaps= 2 total=103987 # 1iq4A.491.129 read from T0547.t06.many.frag # found chain 1iq4A in training set T0547 491 :YSKDKPLFL 1iq4A 130 :LGIKEQLIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=103988 # 1ckmA.491.258 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)D494 (1ckmA)R262 because L (left) conformation "forbidden" or filtered. T0547 491 :YSK 1ckmA 259 :PNL T0547 495 :KPLFL 1ckmA 263 :KNVPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=103990 # 1wcdJ.491.127 read from T0547.t06.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0547)D494 (1wcdJ)G131 because Y (epsilon') conformation "forbidden" or filtered. T0547 491 :YSK 1wcdJ 128 :TFQ T0547 495 :KPLFL 1wcdJ 132 :SLSEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=103992 # 1qmyA.491.4 read from T0547.t06.many.frag # found chain 1qmyA in template set T0547 491 :YSKDKPLFL 1qmyA 33 :LYNGEKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=103993 # 1sdeA.491.88 read from T0547.t06.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)K493 (1sdeA)L91 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1sdeA)G93 because T (delta_L) conformation "forbidden" or filtered. T0547 491 :YS 1sdeA 89 :TY T0547 494 :D 1sdeA 92 :P T0547 496 :PLFL 1sdeA 94 :LLPD Number of specific fragments extracted= 3 number of extra gaps= 2 total=103996 # 1z6fA.491.311 read from T0547.t06.many.frag # found chain 1z6fA in training set Warning: unaligning (T0547)Y491 (1z6fA)Y312 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :SKDKPLFL 1z6fA 313 :VLNSSELH Number of specific fragments extracted= 1 number of extra gaps= 1 total=103997 # 1cfb.491.159 read from T0547.t06.many.frag # found chain 1cfb in template set Warning: unaligning (T0547)P496 (1cfb)N774 because Y (epsilon') conformation "forbidden" or filtered. T0547 491 :YSKDK 1cfb 769 :DWRQN T0547 497 :LFL 1cfb 775 :IVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=103999 # 1twfB.492.892 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)P496 (1twfB)G897 because L (left) conformation "forbidden" or filtered. T0547 492 :SKDK 1twfB 893 :LDDD T0547 497 :LFLH 1twfB 898 :LIAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=104001 # 1yu0A.492.92 read from T0547.t06.many.frag # found chain 1yu0A in training set T0547 492 :SKDKPLFLH 1yu0A 93 :TADTAITMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=104002 # 1yq2A.492.669 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)K495 (1yq2A)A672 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1yq2A)T673 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1yq2A)P677 because P (beta_P) conformation "forbidden" or filtered. T0547 492 :SKD 1yq2A 669 :GES T0547 497 :LFL 1yq2A 674 :IAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=104004 # 1m9zA.492.67 read from T0547.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)D494 (1m9zA)S95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1m9zA)T97 because E (beta_S) conformation "forbidden" or filtered. T0547 492 :SK 1m9zA 93 :AA T0547 495 :K 1m9zA 96 :P T0547 497 :LFLH 1m9zA 98 :CIMK Number of specific fragments extracted= 3 number of extra gaps= 2 total=104007 # 1pg6A.492.95 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)L497 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :SKDKP 1pg6A 89 :APNTP T0547 498 :FLH 1pg6A 95 :QIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=104009 # 2ffeA.492.230 read from T0547.t06.many.frag # found chain 2ffeA in template set Warning: unaligning (T0547)P496 (2ffeA)L235 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (2ffeA)C239 because G (3-10) conformation "forbidden" or filtered. T0547 492 :SKDK 2ffeA 231 :PAGK T0547 497 :LFL 2ffeA 236 :MPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=104011 # 1cqyA.492.77 read from T0547.t06.many.frag # found chain 1cqyA in template set T0547 492 :SKDKPLFLH 1cqyA 495 :WQTIQQSWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104012 # 1n12A.492.87 read from T0547.t06.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)S492 (1n12A)T99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1n12A)G101 because T (delta_L) conformation "forbidden" or filtered. T0547 493 :K 1n12A 100 :L T0547 495 :KPLFLH 1n12A 102 :TPFTPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=104014 # 1qg3A.492.152 read from T0547.t06.many.frag # found chain 1qg3A in template set Warning: unaligning (T0547)D494 (1qg3A)N1280 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1qg3A)M1282 because E (beta_S) conformation "forbidden" or filtered. T0547 492 :SK 1qg3A 1278 :PK T0547 495 :K 1qg3A 1281 :R T0547 497 :LFLH 1qg3A 1283 :LLIE Number of specific fragments extracted= 3 number of extra gaps= 2 total=104017 # 2msbA.492.64 read from T0547.t06.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)H500 (2msbA)S179 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :SKDKPLFL 2msbA 171 :VTGGRLTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=104018 # 2czrA.492.202 read from T0547.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)D494 (2czrA)G197 because T (delta_L) conformation "forbidden" or filtered. T0547 492 :SK 2czrA 195 :KF T0547 495 :KPLFLH 2czrA 198 :GEVPMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=104020 # 1w4sA.492.141 read from T0547.t06.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1w4sA)S1079 because P (beta_P) conformation "forbidden" or filtered. T0547 492 :SKDK 1w4sA 1071 :IKLW T0547 497 :LFL 1w4sA 1076 :MPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=104022 # 1ntyA.492.248 read from T0547.t06.many.frag # found chain 1ntyA in training set Warning: unaligning (T0547)K495 (1ntyA)S1476 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1ntyA)K1477 because E (beta_S) conformation "forbidden" or filtered. T0547 492 :SKD 1ntyA 1473 :LYK T0547 497 :LFLH 1ntyA 1478 :LFTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=104024 # 1gycA.492.179 read from T0547.t06.many.frag # found chain 1gycA in template set T0547 492 :SKDKPLFLH 1gycA 180 :TPTAALAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=104025 # 1k8kC.492.5 read from T0547.t06.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)K493 (1k8kC)L7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)I11 Warning: unaligning (T0547)L497 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)I11 Warning: unaligning (T0547)H500 (1k8kC)H14 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :S 1k8kC 6 :F T0547 494 :DK 1k8kC 8 :VE T0547 498 :FL 1k8kC 12 :SC Number of specific fragments extracted= 3 number of extra gaps= 3 total=104028 # 1w9zA.492.241 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE in next template residue (1w9zA)S244 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE at template residue (1w9zA)S244 Warning: unaligning (T0547)K495 (1w9zA)G245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1w9zA)S246 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :S 1w9zA 242 :A T0547 497 :LFLH 1w9zA 247 :LPLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=104030 # 2bwrA.492.321 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)K495 (2bwrA)N325 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2bwrA)F326 because T (delta_L) conformation "forbidden" or filtered. T0547 492 :SKD 2bwrA 322 :VID T0547 497 :LFLH 2bwrA 327 :GYNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=104032 # 1ssxA.492.80 read from T0547.t06.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)P496 (1ssxA)F120I because E (beta_S) conformation "forbidden" or filtered. T0547 492 :SKDK 1ssxA 120D:NGSS T0547 497 :LFLH 1ssxA 120J:VTVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=104034 # 1mspA.492.11 read from T0547.t06.many.frag # found chain 1mspA in template set Warning: unaligning (T0547)K493 (1mspA)P13 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1mspA)K16 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :S 1mspA 12 :Q T0547 494 :DK 1mspA 14 :SQ T0547 497 :LFLH 1mspA 17 :IVFN Number of specific fragments extracted= 3 number of extra gaps= 2 total=104037 # 1o7jA.492.287 read from T0547.t06.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)P496 (1o7jA)G292 because S (epsilon) conformation "forbidden" or filtered. T0547 492 :SKDK 1o7jA 288 :EELP T0547 497 :LFLH 1o7jA 293 :LVSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=104039 # 1iq4A.492.130 read from T0547.t06.many.frag # found chain 1iq4A in training set T0547 492 :SKDKPLFLH 1iq4A 131 :GIKEQLIFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=104040 # 1cby.492.149 read from T0547.t06.many.frag # found chain 1cby in template set Warning: unaligning (T0547)K493 (1cby)D151 because T (delta_L) conformation "forbidden" or filtered. T0547 492 :S 1cby 150 :I T0547 494 :DKPLFLH 1cby 152 :EAWIFWH Number of specific fragments extracted= 2 number of extra gaps= 1 total=104042 # 1qmyA.492.5 read from T0547.t06.many.frag # found chain 1qmyA in template set Warning: unaligning (T0547)D494 (1qmyA)G36 because T (delta_L) conformation "forbidden" or filtered. T0547 492 :SK 1qmyA 34 :YN T0547 495 :KPLFLH 1qmyA 37 :EKKTFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=104044 # 2bjfA.492.296 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)D494 (2bjfA)I299 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2bjfA)A301 because E (beta_S) conformation "forbidden" or filtered. T0547 492 :SK 2bjfA 297 :NQ T0547 495 :K 2bjfA 300 :N T0547 497 :LFLH 2bjfA 302 :IDMN Number of specific fragments extracted= 3 number of extra gaps= 2 total=104047 # 1lmiA.492.30 read from T0547.t06.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P496 (1lmiA)T35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L499 because of BadResidue code BAD_PEPTIDE in next template residue (1lmiA)P39 Warning: unaligning (T0547)H500 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)P39 T0547 492 :SKDK 1lmiA 31 :LKSS T0547 497 :LF 1lmiA 36 :AV Number of specific fragments extracted= 2 number of extra gaps= 2 total=104049 # 1hufA.492.38 read from T0547.t06.many.frag # found chain 1hufA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1hufA)E36 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1hufA)E36 Warning: unaligning (T0547)L499 (1hufA)G41 because L (left) conformation "forbidden" or filtered. T0547 492 :S 1hufA 34 :N T0547 495 :KPLF 1hufA 37 :TTFQ T0547 500 :H 1hufA 42 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=104052 # 1vp6A.492.65 read from T0547.t06.many.frag # found chain 1vp6A in training set Warning: unaligning (T0547)K493 (1vp6A)T284 because P (beta_P) conformation "forbidden" or filtered. T0547 492 :S 1vp6A 283 :A T0547 494 :DKPLFLH 1vp6A 285 :PNPVELG Number of specific fragments extracted= 2 number of extra gaps= 1 total=104054 # 1utcA.492.193 read from T0547.t06.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)D494 (1utcA)G196 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1utcA)A198 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1utcA)A199 because Y (epsilon') conformation "forbidden" or filtered. T0547 492 :SK 1utcA 194 :IE T0547 495 :K 1utcA 197 :H T0547 498 :FLH 1utcA 200 :SFA Number of specific fragments extracted= 3 number of extra gaps= 2 total=104057 # 1vb3A.492.402 read from T0547.t06.many.frag # found chain 1vb3A in template set T0547 492 :SKDKPLFLH 1vb3A 403 :RADLPLLSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=104058 # 1pguA.492.281 read from T0547.t06.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)D494 (1pguA)S284 because L (left) conformation "forbidden" or filtered. T0547 492 :SK 1pguA 282 :TT T0547 495 :KPLFLH 1pguA 285 :KCVQKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=104060 # 1yq2A.493.670 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)K493 (1yq2A)E670 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1yq2A)S671 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1yq2A)A672 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1yq2A)T673 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHD 1yq2A 674 :IALPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=104061 # 1yu0A.493.93 read from T0547.t06.many.frag # found chain 1yu0A in training set T0547 493 :KDKPLFLHD 1yu0A 94 :ADTAITMPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=104062 # 1twfB.493.893 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)P496 (1twfB)G897 because L (left) conformation "forbidden" or filtered. T0547 493 :KDK 1twfB 894 :DDD T0547 497 :LFLHD 1twfB 898 :LIAPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=104064 # 1pg6A.493.96 read from T0547.t06.many.frag # found chain 1pg6A in training set T0547 493 :KDKPLFLHD 1pg6A 90 :PNTPGQIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=104065 # 1n12A.493.88 read from T0547.t06.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)D494 (1n12A)G101 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1n12A)K108 because D (zeta) conformation "forbidden" or filtered. T0547 493 :K 1n12A 100 :L T0547 495 :KPLFLH 1n12A 102 :TPFTPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=104067 # 1m9zA.493.68 read from T0547.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)P496 (1m9zA)T97 because E (beta_S) conformation "forbidden" or filtered. T0547 493 :KDK 1m9zA 94 :ASP T0547 497 :LFLHD 1m9zA 98 :CIMKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=104069 # 1w9zA.493.242 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)K493 because of BadResidue code BAD_PEPTIDE in next template residue (1w9zA)S244 Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE at template residue (1w9zA)S244 Warning: unaligning (T0547)K495 (1w9zA)G245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1w9zA)S246 because Y (epsilon') conformation "forbidden" or filtered. T0547 497 :LFLHD 1w9zA 247 :LPLTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=104070 # 2ffeA.493.231 read from T0547.t06.many.frag # found chain 2ffeA in template set Warning: unaligning (T0547)P496 (2ffeA)L235 because G (3-10) conformation "forbidden" or filtered. T0547 493 :KDK 2ffeA 232 :AGK T0547 497 :LFLHD 2ffeA 236 :MPACG Number of specific fragments extracted= 2 number of extra gaps= 1 total=104072 # 1qg3A.493.153 read from T0547.t06.many.frag # found chain 1qg3A in template set Warning: unaligning (T0547)D494 (1qg3A)N1280 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1qg3A)R1281 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1qg3A)M1282 because E (beta_S) conformation "forbidden" or filtered. T0547 493 :K 1qg3A 1279 :K T0547 497 :LFLHD 1qg3A 1283 :LLIEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=104074 # 1cqyA.493.78 read from T0547.t06.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)K493 (1cqyA)Q496 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1cqyA)P504 because C (cis) conformation "forbidden" or filtered. T0547 494 :DKPLFLH 1cqyA 497 :TIQQSWN Number of specific fragments extracted= 1 number of extra gaps= 2 total=104075 # 1gycA.493.180 read from T0547.t06.many.frag # found chain 1gycA in template set T0547 493 :KDKPLFLHD 1gycA 181 :PTAALAVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104076 # 2bjfA.493.297 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)P496 (2bjfA)A301 because E (beta_S) conformation "forbidden" or filtered. T0547 493 :KDK 2bjfA 298 :QIN T0547 497 :LFLHD 2bjfA 302 :IDMNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=104078 # 1ssxA.493.81 read from T0547.t06.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)K493 (1ssxA)G120E because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1ssxA)F120I because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1ssxA)G123 because Y (epsilon') conformation "forbidden" or filtered. T0547 494 :DK 1ssxA 120G:SS T0547 497 :LFLH 1ssxA 120J:VTVR Number of specific fragments extracted= 2 number of extra gaps= 3 total=104080 # 1iq4A.493.131 read from T0547.t06.many.frag # found chain 1iq4A in training set T0547 493 :KDKPLFLHD 1iq4A 132 :IKEQLIFPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=104081 # 1cby.493.150 read from T0547.t06.many.frag # found chain 1cby in template set Warning: unaligning (T0547)D501 (1cby)S159 because L (left) conformation "forbidden" or filtered. T0547 493 :KDKPLFLH 1cby 151 :DEAWIFWH Number of specific fragments extracted= 1 number of extra gaps= 1 total=104082 # 1w4sA.493.142 read from T0547.t06.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)D494 (1w4sA)L1073 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. T0547 493 :K 1w4sA 1072 :K T0547 495 :K 1w4sA 1074 :W T0547 497 :LFLHD 1w4sA 1076 :MPVSS Number of specific fragments extracted= 3 number of extra gaps= 2 total=104085 # 1ntyA.493.249 read from T0547.t06.many.frag # found chain 1ntyA in training set Warning: unaligning (T0547)K493 (1ntyA)Y1474 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1ntyA)S1476 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1ntyA)K1477 because E (beta_S) conformation "forbidden" or filtered. T0547 494 :D 1ntyA 1475 :K T0547 497 :LFLHD 1ntyA 1478 :LFTSE Number of specific fragments extracted= 2 number of extra gaps= 2 total=104087 # 2bwrA.493.322 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)K495 (2bwrA)N325 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2bwrA)F326 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (2bwrA)G331 because T (delta_L) conformation "forbidden" or filtered. T0547 493 :KD 2bwrA 323 :ID T0547 497 :LFLH 2bwrA 327 :GYNQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=104089 # 1d3yA.493.223 read from T0547.t06.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)K495 (1d3yA)Y294 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1d3yA)D295 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1d3yA)H299 because E (beta_S) conformation "forbidden" or filtered. T0547 493 :KD 1d3yA 292 :ID T0547 497 :LFL 1d3yA 296 :LPT T0547 501 :D 1d3yA 300 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=104092 # 1pguA.493.282 read from T0547.t06.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)D494 (1pguA)S284 because L (left) conformation "forbidden" or filtered. T0547 493 :K 1pguA 283 :T T0547 495 :KPLFLHD 1pguA 285 :KCVQKWT Number of specific fragments extracted= 2 number of extra gaps= 1 total=104094 # 2bm5A.493.135 read from T0547.t06.many.frag # found chain 2bm5A in template set Warning: unaligning (T0547)P496 (2bm5A)G136 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (2bm5A)D141 because T (delta_L) conformation "forbidden" or filtered. T0547 493 :KDK 2bm5A 133 :RTT T0547 497 :LFLH 2bm5A 137 :ARLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=104096 # 2czrA.493.203 read from T0547.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0547)K495 (2czrA)G198 because P (beta_P) conformation "forbidden" or filtered. T0547 493 :KD 2czrA 196 :FG T0547 496 :PLFLHD 2czrA 199 :EVPMDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=104098 # 1at0.493.82 read from T0547.t06.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)D494 (1at0)L341 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1at0)T342 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1at0)F343 because E (beta_S) conformation "forbidden" or filtered. T0547 493 :K 1at0 340 :K T0547 497 :LFLHD 1at0 344 :VFADR Number of specific fragments extracted= 2 number of extra gaps= 1 total=104100 # 1lmiA.493.31 read from T0547.t06.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)K493 (1lmiA)K32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D494 (1lmiA)S33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1lmiA)T35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L499 because of BadResidue code BAD_PEPTIDE in next template residue (1lmiA)P39 Warning: unaligning (T0547)H500 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)P39 Warning: unaligning (T0547)D501 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)G40 T0547 495 :K 1lmiA 34 :S T0547 497 :LF 1lmiA 36 :AV Number of specific fragments extracted= 2 number of extra gaps= 3 total=104102 # 2c3vA.493.35 read from T0547.t06.many.frag # found chain 2c3vA in training set Warning: unaligning (T0547)K495 (2c3vA)P115 because C (cis) conformation "forbidden" or filtered. T0547 493 :KD 2c3vA 113 :TL T0547 496 :PLFLHD 2c3vA 116 :GVPLTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=104104 # 2msbA.493.65 read from T0547.t06.many.frag # found chain 2msbA in training set Warning: unaligning (T0547)K493 (2msbA)T172 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (2msbA)G174 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (2msbA)S179 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (2msbA)N180 because D (zeta) conformation "forbidden" or filtered. T0547 494 :D 2msbA 173 :G T0547 496 :PLFL 2msbA 175 :RLTY Number of specific fragments extracted= 2 number of extra gaps= 3 total=104106 # 1k8kC.493.6 read from T0547.t06.many.frag # found chain 1k8kC in template set Warning: unaligning (T0547)K493 (1k8kC)L7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 because of BadResidue code BAD_PEPTIDE in next template residue (1k8kC)I11 Warning: unaligning (T0547)L497 because of BadResidue code BAD_PEPTIDE at template residue (1k8kC)I11 Warning: unaligning (T0547)L499 (1k8kC)C13 because Y (epsilon') conformation "forbidden" or filtered. T0547 494 :DK 1k8kC 8 :VE T0547 498 :F 1k8kC 12 :S T0547 500 :HD 1k8kC 14 :HA Number of specific fragments extracted= 3 number of extra gaps= 3 total=104109 1id2A expands to /projects/compbio/data/pdb/1id2.pdb.gz 1id2A:# 1id2A.493.63 read from T0547.t06.many.frag # adding 1id2A to template set # found chain 1id2A in template set Warning: unaligning (T0547)K493 (1id2A)G64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K495 (1id2A)D66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1id2A)E71 because P (beta_P) conformation "forbidden" or filtered. T0547 494 :D 1id2A 65 :E T0547 496 :PLFL 1id2A 67 :AFRG T0547 501 :D 1id2A 72 :M Number of specific fragments extracted= 3 number of extra gaps= 3 total=104112 # 1p99A.493.218 read from T0547.t06.many.frag # found chain 1p99A in template set T0547 493 :KDKPLFLHD 1p99A 219 :KNDPIFLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=104113 # 2sns.493.34 read from T0547.t06.many.frag # found chain 2sns in template set Warning: unaligning (T0547)P496 (2sns)L38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (2sns)P42 because P (beta_P) conformation "forbidden" or filtered. T0547 493 :KDK 2sns 35 :RLL T0547 497 :LFL 2sns 39 :VDT T0547 501 :D 2sns 43 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=104116 # 1yq2A.494.671 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)K495 (1yq2A)A672 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1yq2A)T673 because E (beta_S) conformation "forbidden" or filtered. T0547 494 :D 1yq2A 671 :S T0547 497 :LFLHDV 1yq2A 674 :IALPAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=104118 # 1yu0A.494.94 read from T0547.t06.many.frag # found chain 1yu0A in training set T0547 494 :DKPLFLHDV 1yu0A 95 :DTAITMPAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104119 # 1pg6A.494.97 read from T0547.t06.many.frag # found chain 1pg6A in training set T0547 494 :DKPLFLHDV 1pg6A 91 :NTPGQIVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104120 # 1twfB.494.894 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)P496 (1twfB)G897 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1twfB)G902 because T (delta_L) conformation "forbidden" or filtered. T0547 494 :DK 1twfB 895 :DD T0547 497 :LFLH 1twfB 898 :LIAP T0547 502 :V 1twfB 903 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=104123 # 1n12A.494.89 read from T0547.t06.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)D494 (1n12A)G101 because T (delta_L) conformation "forbidden" or filtered. T0547 495 :KPLFLHDV 1n12A 102 :TPFTPGKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=104124 # 1m9zA.494.69 read from T0547.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)P496 (1m9zA)T97 because E (beta_S) conformation "forbidden" or filtered. T0547 494 :DK 1m9zA 95 :SP T0547 497 :LFLHDV 1m9zA 98 :CIMKEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=104126 # 1w9zA.494.243 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)D494 because of BadResidue code BAD_PEPTIDE at template residue (1w9zA)S244 Warning: unaligning (T0547)K495 (1w9zA)G245 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1w9zA)S246 because Y (epsilon') conformation "forbidden" or filtered. T0547 497 :LFLHDV 1w9zA 247 :LPLTTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=104127 # 1d3yA.494.224 read from T0547.t06.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)P496 (1d3yA)D295 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1d3yA)P300 because P (beta_P) conformation "forbidden" or filtered. T0547 494 :DK 1d3yA 293 :DY T0547 497 :LFLH 1d3yA 296 :LPTH T0547 502 :V 1d3yA 301 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=104130 # 2bjfA.494.298 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)P496 (2bjfA)A301 because E (beta_S) conformation "forbidden" or filtered. T0547 494 :DK 2bjfA 299 :IN T0547 497 :LFLHDV 2bjfA 302 :IDMNKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=104132 # 1qg3A.494.154 read from T0547.t06.many.frag # found chain 1qg3A in template set Warning: unaligning (T0547)P496 (1qg3A)M1282 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1qg3A)N1287 because L (left) conformation "forbidden" or filtered. T0547 494 :DK 1qg3A 1280 :NR T0547 497 :LFLH 1qg3A 1283 :LLIE T0547 502 :V 1qg3A 1288 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=104135 # 1cby.494.151 read from T0547.t06.many.frag # found chain 1cby in template set Warning: unaligning (T0547)D501 (1cby)S159 because L (left) conformation "forbidden" or filtered. T0547 494 :DKPLFLH 1cby 152 :EAWIFWH T0547 502 :V 1cby 160 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=104137 # 2ffeA.494.232 read from T0547.t06.many.frag # found chain 2ffeA in template set Warning: unaligning (T0547)P496 (2ffeA)L235 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (2ffeA)G240 because T (delta_L) conformation "forbidden" or filtered. T0547 494 :DK 2ffeA 233 :GK T0547 497 :LFLH 2ffeA 236 :MPAC T0547 502 :V 2ffeA 241 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=104140 # 1gycA.494.181 read from T0547.t06.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)K495 (1gycA)A183 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1gycA)N189 because P (beta_P) conformation "forbidden" or filtered. T0547 494 :D 1gycA 182 :T T0547 496 :PLFLH 1gycA 184 :ALAVI T0547 502 :V 1gycA 190 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=104143 # 1at0.494.83 read from T0547.t06.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)P496 (1at0)F343 because E (beta_S) conformation "forbidden" or filtered. T0547 494 :DK 1at0 341 :LT T0547 497 :LFLHDV 1at0 344 :VFADRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=104145 # 2c3vA.494.36 read from T0547.t06.many.frag # found chain 2c3vA in training set Warning: unaligning (T0547)K495 (2c3vA)P115 because C (cis) conformation "forbidden" or filtered. T0547 494 :D 2c3vA 114 :L T0547 496 :PLFLHDV 2c3vA 116 :GVPLTKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=104147 # 1cqyA.494.79 read from T0547.t06.many.frag # found chain 1cqyA in template set Warning: unaligning (T0547)L499 (1cqyA)W502 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1cqyA)P504 because C (cis) conformation "forbidden" or filtered. T0547 494 :DKPLF 1cqyA 497 :TIQQS T0547 500 :H 1cqyA 503 :N T0547 502 :V 1cqyA 505 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=104150 # 1pguA.494.283 read from T0547.t06.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)D494 (1pguA)S284 because L (left) conformation "forbidden" or filtered. T0547 495 :KPLFLHDV 1pguA 285 :KCVQKWTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=104151 # 1gpiA.494.302 read from T0547.t06.many.frag # found chain 1gpiA in training set Warning: unaligning (T0547)D494 (1gpiA)G303 because T (delta_L) conformation "forbidden" or filtered. T0547 495 :KPLFLHDV 1gpiA 304 :KVIQNSVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=104152 # 1iq4A.494.132 read from T0547.t06.many.frag # found chain 1iq4A in training set Warning: unaligning (T0547)K495 (1iq4A)E134 because E (beta_S) conformation "forbidden" or filtered. T0547 494 :D 1iq4A 133 :K T0547 496 :PLFLHDV 1iq4A 135 :QLIFPEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=104154 # 1ssxA.494.82 read from T0547.t06.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)P496 (1ssxA)F120I because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1ssxA)G123 because Y (epsilon') conformation "forbidden" or filtered. T0547 494 :DK 1ssxA 120G:SS T0547 497 :LFLH 1ssxA 120J:VTVR T0547 502 :V 1ssxA 124 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=104157 # 2sns.494.35 read from T0547.t06.many.frag # found chain 2sns in template set Warning: unaligning (T0547)P496 (2sns)L38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (2sns)V39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (2sns)E43 because P (beta_P) conformation "forbidden" or filtered. T0547 494 :DK 2sns 36 :LL T0547 498 :FLH 2sns 40 :DTP T0547 502 :V 2sns 44 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=104160 # 1wcdJ.494.130 read from T0547.t06.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0547)D501 (1wcdJ)D138 because E (beta_S) conformation "forbidden" or filtered. T0547 494 :DKPLFLH 1wcdJ 131 :GSLSELT T0547 502 :V 1wcdJ 139 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=104162 # 1twfC.494.138 read from T0547.t06.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)D494 (1twfC)G139 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1twfC)C145 because Y (epsilon') conformation "forbidden" or filtered. T0547 495 :KPLFL 1twfC 140 :NGVLI T0547 501 :DV 1twfC 146 :KL Number of specific fragments extracted= 2 number of extra gaps= 2 total=104164 # 2bm5A.494.136 read from T0547.t06.many.frag # found chain 2bm5A in template set Warning: unaligning (T0547)P496 (2bm5A)G136 because T (delta_L) conformation "forbidden" or filtered. T0547 494 :DK 2bm5A 134 :TT T0547 497 :LFLHDV 2bm5A 137 :ARLDDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=104166 # 1w4sA.494.143 read from T0547.t06.many.frag # found chain 1w4sA in training set Warning: unaligning (T0547)P496 (1w4sA)T1075 because G (3-10) conformation "forbidden" or filtered. T0547 494 :DK 1w4sA 1073 :LW T0547 497 :LFLHDV 1w4sA 1076 :MPVSSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=104168 # 2bwrA.494.323 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)K495 (2bwrA)N325 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2bwrA)F326 because T (delta_L) conformation "forbidden" or filtered. T0547 494 :D 2bwrA 324 :D T0547 497 :LFLHDV 2bwrA 327 :GYNQGW Number of specific fragments extracted= 2 number of extra gaps= 1 total=104170 # 1l2hA.494.76 read from T0547.t06.many.frag # found chain 1l2hA in template set Warning: unaligning (T0547)K495 (1l2hA)P78 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1l2hA)T79 because E (beta_S) conformation "forbidden" or filtered. T0547 494 :D 1l2hA 77 :K T0547 497 :LFLHDV 1l2hA 80 :LQLESV Number of specific fragments extracted= 2 number of extra gaps= 1 total=104172 # 1lmiA.494.32 read from T0547.t06.many.frag # found chain 1lmiA in training set Warning: unaligning (T0547)P496 (1lmiA)T35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)L499 because of BadResidue code BAD_PEPTIDE in next template residue (1lmiA)P39 Warning: unaligning (T0547)H500 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)P39 Warning: unaligning (T0547)D501 because of BadResidue code BAD_PEPTIDE at template residue (1lmiA)G40 T0547 494 :DK 1lmiA 33 :SS T0547 497 :LF 1lmiA 36 :AV T0547 502 :V 1lmiA 41 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=104175 # 1njhA.494.51 read from T0547.t06.many.frag # found chain 1njhA in training set Warning: unaligning (T0547)P496 (1njhA)K51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1njhA)V52 because Y (epsilon') conformation "forbidden" or filtered. T0547 494 :DK 1njhA 49 :NA T0547 498 :FLHDV 1njhA 53 :TYHQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=104177 # 1qazA.494.259 read from T0547.t06.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)P496 (1qazA)G265 because L (left) conformation "forbidden" or filtered. T0547 494 :DK 1qazA 263 :RQ T0547 497 :LFLHDV 1qazA 266 :IDLYAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=104179 # 1yu0A.495.95 read from T0547.t06.many.frag # found chain 1yu0A in training set T0547 495 :KPLFLHDVD 1yu0A 96 :TAITMPALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=104180 # 1yq2A.495.672 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)K495 (1yq2A)A672 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1yq2A)T673 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1yq2A)A678 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLH 1yq2A 674 :IALP T0547 502 :VD 1yq2A 679 :MP Number of specific fragments extracted= 2 number of extra gaps= 2 total=104182 # 2bjfA.495.299 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)P496 (2bjfA)A301 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :K 2bjfA 300 :N T0547 497 :LFLHDVD 2bjfA 302 :IDMNKEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=104184 # 1pg6A.495.98 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)L497 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1pg6A)A98 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :KP 1pg6A 92 :TP T0547 498 :FLH 1pg6A 95 :QIV T0547 502 :VD 1pg6A 99 :LE Number of specific fragments extracted= 3 number of extra gaps= 2 total=104187 # 1twfB.495.895 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)P496 (1twfB)G897 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1twfB)G902 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1twfB)R904 because P (beta_P) conformation "forbidden" or filtered. T0547 495 :K 1twfB 896 :D T0547 497 :LFLH 1twfB 898 :LIAP T0547 502 :V 1twfB 903 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=104190 # 1d3yA.495.225 read from T0547.t06.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)P496 (1d3yA)D295 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1d3yA)H299 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :K 1d3yA 294 :Y T0547 497 :LFL 1d3yA 296 :LPT T0547 501 :DVD 1d3yA 300 :PLK Number of specific fragments extracted= 3 number of extra gaps= 2 total=104193 # 1w9zA.495.244 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)P496 (1w9zA)S246 because Y (epsilon') conformation "forbidden" or filtered. T0547 495 :K 1w9zA 245 :G T0547 497 :LFLHDVD 1w9zA 247 :LPLTTIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=104195 # 1n12A.495.90 read from T0547.t06.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)D501 (1n12A)K108 because D (zeta) conformation "forbidden" or filtered. T0547 495 :KPLFLH 1n12A 102 :TPFTPG T0547 502 :VD 1n12A 109 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=104197 # 1m9zA.495.70 read from T0547.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)P496 (1m9zA)T97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1m9zA)E102 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1m9zA)K104 because P (beta_P) conformation "forbidden" or filtered. T0547 495 :K 1m9zA 96 :P T0547 497 :LFLH 1m9zA 98 :CIMK T0547 502 :V 1m9zA 103 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=104200 # 1gpiA.495.303 read from T0547.t06.many.frag # found chain 1gpiA in training set T0547 495 :KPLFLHDVD 1gpiA 304 :KVIQNSVAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104201 # 1cby.495.152 read from T0547.t06.many.frag # found chain 1cby in template set Warning: unaligning (T0547)D503 (1cby)S161 because Y (epsilon') conformation "forbidden" or filtered. T0547 495 :KPLFLHDV 1cby 153 :AWIFWHSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=104202 # 2c3vA.495.37 read from T0547.t06.many.frag # found chain 2c3vA in training set Warning: unaligning (T0547)K495 (2c3vA)P115 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (2c3vA)G116 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c3vA)E125 T0547 497 :LFLHDV 2c3vA 117 :VPLTKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=104203 # 1pguA.495.284 read from T0547.t06.many.frag # found chain 1pguA in template set T0547 495 :KPLFLHDVD 1pguA 285 :KCVQKWTLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=104204 # 1l2hA.495.77 read from T0547.t06.many.frag # found chain 1l2hA in template set Warning: unaligning (T0547)P496 (1l2hA)T79 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :K 1l2hA 78 :P T0547 497 :LFLHDVD 1l2hA 80 :LQLESVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=104206 # 1qazA.495.260 read from T0547.t06.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)P496 (1qazA)G265 because L (left) conformation "forbidden" or filtered. T0547 495 :K 1qazA 264 :Q T0547 497 :LFLHDVD 1qazA 266 :IDLYAYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=104208 # 1r77A.495.80 read from T0547.t06.many.frag # found chain 1r77A in training set Warning: unaligning (T0547)P496 (1r77A)Y341 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1r77A)R345 because Y (epsilon') conformation "forbidden" or filtered. T0547 495 :K 1r77A 340 :V T0547 497 :LFL 1r77A 342 :LPV T0547 501 :DVD 1r77A 346 :TWN Number of specific fragments extracted= 3 number of extra gaps= 2 total=104211 # 1at0.495.84 read from T0547.t06.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)P496 (1at0)F343 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :K 1at0 342 :T T0547 497 :LFLHDVD 1at0 344 :VFADRIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=104213 # 2bm5A.495.137 read from T0547.t06.many.frag # found chain 2bm5A in template set Warning: unaligning (T0547)P496 (2bm5A)G136 because T (delta_L) conformation "forbidden" or filtered. T0547 495 :K 2bm5A 135 :T T0547 497 :LFLHDVD 2bm5A 137 :ARLDDAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=104215 # 1qg3A.495.155 read from T0547.t06.many.frag # found chain 1qg3A in template set Warning: unaligning (T0547)K495 (1qg3A)R1281 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P496 (1qg3A)M1282 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1qg3A)N1287 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1qg3A)R1289 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLH 1qg3A 1283 :LLIE T0547 502 :V 1qg3A 1288 :L Number of specific fragments extracted= 2 number of extra gaps= 3 total=104217 # 1twfC.495.139 read from T0547.t06.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)P496 (1twfC)G141 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1twfC)K146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1twfC)R148 because P (beta_P) conformation "forbidden" or filtered. T0547 495 :K 1twfC 140 :N T0547 497 :LFLH 1twfC 142 :VLIC T0547 502 :V 1twfC 147 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=104220 # 2sns.495.36 read from T0547.t06.many.frag # found chain 2sns in template set Warning: unaligning (T0547)P496 (2sns)L38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (2sns)V39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V502 (2sns)T44 because G (3-10) conformation "forbidden" or filtered. T0547 495 :K 2sns 37 :L T0547 498 :FLHD 2sns 40 :DTPE T0547 503 :D 2sns 45 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=104223 # 1ssxA.495.83 read from T0547.t06.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)P496 (1ssxA)F120I because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1ssxA)G123 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1ssxA)T125 because P (beta_P) conformation "forbidden" or filtered. T0547 495 :K 1ssxA 120H:S T0547 497 :LFLH 1ssxA 120J:VTVR T0547 502 :V 1ssxA 124 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=104226 # 2ffeA.495.233 read from T0547.t06.many.frag # found chain 2ffeA in template set Warning: unaligning (T0547)P496 (2ffeA)L235 because G (3-10) conformation "forbidden" or filtered. T0547 495 :K 2ffeA 234 :K T0547 497 :LFLHDVD 2ffeA 236 :MPACGIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=104228 # 1u5uA.495.328 read from T0547.t06.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)P496 (1u5uA)S330 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1u5uA)G332 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1u5uA)E335 because P (beta_P) conformation "forbidden" or filtered. T0547 495 :K 1u5uA 329 :A T0547 497 :L 1u5uA 331 :L T0547 499 :LH 1u5uA 333 :LL T0547 502 :VD 1u5uA 336 :AK Number of specific fragments extracted= 4 number of extra gaps= 3 total=104232 # 1i8dA.495.144 read from T0547.t06.many.frag # found chain 1i8dA in template set Warning: unaligning (T0547)D503 (1i8dA)T153 because Y (epsilon') conformation "forbidden" or filtered. T0547 495 :KPLFLHDV 1i8dA 145 :ISLTVGEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=104233 # 2f69A.495.108 read from T0547.t06.many.frag # found chain 2f69A in training set Warning: unaligning (T0547)P496 (2f69A)R215 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (2f69A)A219 because Y (epsilon') conformation "forbidden" or filtered. T0547 495 :K 2f69A 214 :E T0547 497 :LFL 2f69A 216 :VYV T0547 501 :DVD 2f69A 220 :ESL Number of specific fragments extracted= 3 number of extra gaps= 2 total=104236 # 2b5iC.495.150 read from T0547.t06.many.frag # found chain 2b5iC in template set Warning: unaligning (T0547)P496 (2b5iC)K185 because E (beta_S) conformation "forbidden" or filtered. T0547 495 :K 2b5iC 184 :H T0547 497 :LFLHDVD 2b5iC 186 :FSLPSVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=104238 # 1njhA.495.52 read from T0547.t06.many.frag # found chain 1njhA in training set Warning: unaligning (T0547)P496 (1njhA)K51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1njhA)V52 because Y (epsilon') conformation "forbidden" or filtered. T0547 495 :K 1njhA 50 :A T0547 498 :FLHDVD 1njhA 53 :TYHQAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=104240 # 1khxA.495.68 read from T0547.t06.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)P496 (1khxA)R310 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1khxA)S317 because P (beta_P) conformation "forbidden" or filtered. T0547 495 :K 1khxA 309 :E T0547 497 :LFLHDV 1khxA 311 :FCLGLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=104242 # 1id2A.495.65 read from T0547.t06.many.frag # found chain 1id2A in template set T0547 495 :KPLFLHDVD 1id2A 66 :DAFRGEMMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=104243 # 2bjfA.496.300 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)P496 (2bjfA)A301 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 2bjfA 302 :IDMNKENL Number of specific fragments extracted= 1 number of extra gaps= 1 total=104244 # 1yu0A.496.96 read from T0547.t06.many.frag # found chain 1yu0A in training set T0547 496 :PLFLHDVDV 1yu0A 97 :AITMPALTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=104245 # 1pg6A.496.99 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)L497 (1pg6A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1pg6A)A98 because E (beta_S) conformation "forbidden" or filtered. T0547 496 :P 1pg6A 93 :P T0547 498 :FLH 1pg6A 95 :QIV T0547 502 :VDV 1pg6A 99 :LEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=104248 # 1yq2A.496.673 read from T0547.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0547)P496 (1yq2A)T673 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1yq2A 674 :IALPAMPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=104249 # 1n12A.496.91 read from T0547.t06.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)D503 (1n12A)T110 because E (beta_S) conformation "forbidden" or filtered. T0547 496 :PLFLHDV 1n12A 103 :PFTPGKI T0547 504 :V 1n12A 111 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=104251 # 1m9zA.496.71 read from T0547.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)P496 (1m9zA)T97 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1m9zA 98 :CIMKEKKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=104252 # 1w9zA.496.245 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)P496 (1w9zA)S246 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1w9zA)T251 because Y (epsilon') conformation "forbidden" or filtered. T0547 497 :LFLH 1w9zA 247 :LPLT T0547 502 :VDV 1w9zA 252 :IPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=104254 # 1twfB.496.896 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)P496 (1twfB)G897 because L (left) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1twfB 898 :LIAPGVRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=104255 # 1r77A.496.81 read from T0547.t06.many.frag # found chain 1r77A in training set Warning: unaligning (T0547)P496 (1r77A)Y341 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1r77A)R345 because Y (epsilon') conformation "forbidden" or filtered. T0547 497 :LFL 1r77A 342 :LPV T0547 501 :DVDV 1r77A 346 :TWNE Number of specific fragments extracted= 2 number of extra gaps= 2 total=104257 # 1l2hA.496.78 read from T0547.t06.many.frag # found chain 1l2hA in template set Warning: unaligning (T0547)P496 (1l2hA)T79 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1l2hA 80 :LQLESVDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=104258 # 1pguA.496.285 read from T0547.t06.many.frag # found chain 1pguA in template set T0547 496 :PLFLHDVDV 1pguA 286 :CVQKWTLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=104259 # 1gpiA.496.304 read from T0547.t06.many.frag # found chain 1gpiA in training set T0547 496 :PLFLHDVDV 1gpiA 305 :VIQNSVANI Number of specific fragments extracted= 1 number of extra gaps= 0 total=104260 # 1at0.496.85 read from T0547.t06.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)P496 (1at0)F343 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1at0 344 :VFADRIEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=104261 # 2bm5A.496.138 read from T0547.t06.many.frag # found chain 2bm5A in template set Warning: unaligning (T0547)P496 (2bm5A)G136 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (2bm5A)D143 because D (zeta) conformation "forbidden" or filtered. T0547 497 :LFLHDV 2bm5A 137 :ARLDDA T0547 504 :V 2bm5A 144 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=104263 # 1d3yA.496.226 read from T0547.t06.many.frag # found chain 1d3yA in template set Warning: unaligning (T0547)P496 (1d3yA)D295 because L (left) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1d3yA 296 :LPTHPLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=104264 # 1qg3A.496.156 read from T0547.t06.many.frag # found chain 1qg3A in template set Warning: unaligning (T0547)P496 (1qg3A)M1282 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1qg3A 1283 :LLIENLRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=104265 # 2c3vA.496.38 read from T0547.t06.many.frag # found chain 2c3vA in training set Warning: unaligning (T0547)D503 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c3vA)E125 T0547 496 :PLFLHDV 2c3vA 116 :GVPLTKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=104266 # 1qazA.496.261 read from T0547.t06.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)P496 (1qazA)G265 because L (left) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1qazA 266 :IDLYAYKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=104267 # 1khxA.496.69 read from T0547.t06.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)P496 (1khxA)R310 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1khxA 311 :FCLGLLSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=104268 # 2b5iC.496.151 read from T0547.t06.many.frag # found chain 2b5iC in template set Warning: unaligning (T0547)P496 (2b5iC)K185 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (2b5iC)D192 because E (beta_S) conformation "forbidden" or filtered. T0547 497 :LFLHDV 2b5iC 186 :FSLPSV T0547 504 :V 2b5iC 193 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=104270 # 1cby.496.153 read from T0547.t06.many.frag # found chain 1cby in template set Warning: unaligning (T0547)H500 (1cby)H158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1cby)S159 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1cby)S161 because Y (epsilon') conformation "forbidden" or filtered. T0547 496 :PLFL 1cby 154 :WIFW T0547 502 :V 1cby 160 :L T0547 504 :V 1cby 162 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=104273 # 1twfC.496.140 read from T0547.t06.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)H500 (1twfC)C145 because Y (epsilon') conformation "forbidden" or filtered. T0547 496 :PLFL 1twfC 141 :GVLI T0547 501 :DVDV 1twfC 146 :KLRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=104275 # 1o75A.496.346 read from T0547.t06.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)P496 (1o75A)V347 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1o75A)G351 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1o75A)G352 because T (delta_L) conformation "forbidden" or filtered. T0547 497 :LFL 1o75A 348 :LTI T0547 502 :VDV 1o75A 353 :ADA Number of specific fragments extracted= 2 number of extra gaps= 2 total=104277 1axiB expands to /projects/compbio/data/pdb/1axi.pdb.gz 1axiB:# 1axiB.496.195 read from T0547.t06.many.frag # adding 1axiB to template set # found chain 1axiB in template set Warning: unaligning (T0547)P496 (1axiB)S196 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (1axiB)V197 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1axiB)S201 because L (left) conformation "forbidden" or filtered. T0547 498 :FLH 1axiB 198 :PVY T0547 502 :VDV 1axiB 202 :LKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=104279 # 2sns.496.37 read from T0547.t06.many.frag # found chain 2sns in template set Warning: unaligning (T0547)P496 (2sns)L38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L497 (2sns)V39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (2sns)K45 because Y (epsilon') conformation "forbidden" or filtered. T0547 498 :FLHDV 2sns 40 :DTPET T0547 504 :V 2sns 46 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=104281 # 2bwrA.496.325 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)P496 (2bwrA)F326 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (2bwrA)G331 because T (delta_L) conformation "forbidden" or filtered. T0547 497 :LFLH 2bwrA 327 :GYNQ T0547 502 :VDV 2bwrA 332 :WRV Number of specific fragments extracted= 2 number of extra gaps= 2 total=104283 # 1u5uA.496.329 read from T0547.t06.many.frag # found chain 1u5uA in template set Warning: unaligning (T0547)P496 (1u5uA)S330 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F498 (1u5uA)G332 because S (epsilon) conformation "forbidden" or filtered. T0547 497 :L 1u5uA 331 :L T0547 499 :LHDVDV 1u5uA 333 :LLEAKS Number of specific fragments extracted= 2 number of extra gaps= 2 total=104285 # 1ssxA.496.84 read from T0547.t06.many.frag # found chain 1ssxA in template set Warning: unaligning (T0547)P496 (1ssxA)F120I because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (1ssxA)R122 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1ssxA)G123 because Y (epsilon') conformation "forbidden" or filtered. T0547 497 :LFL 1ssxA 120J:VTV T0547 502 :VDV 1ssxA 124 :STE Number of specific fragments extracted= 2 number of extra gaps= 2 total=104287 # 1w96A.496.459 read from T0547.t06.many.frag # found chain 1w96A in training set T0547 496 :PLFLHDVDV 1w96A 472 :GGTLHELNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=104288 # 2f69A.496.109 read from T0547.t06.many.frag # found chain 2f69A in training set Warning: unaligning (T0547)P496 (2f69A)R215 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H500 (2f69A)A219 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (2f69A)E220 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFL 2f69A 216 :VYV T0547 502 :VDV 2f69A 221 :SLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=104290 # 2bjfA.497.301 read from T0547.t06.many.frag # found chain 2bjfA in training set T0547 497 :LFLHDVDVE 2bjfA 302 :IDMNKENLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=104291 # 1pg6A.497.100 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)E505 (1pg6A)G102 because Y (epsilon') conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1pg6A 94 :GQIVALEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=104292 # 1m9zA.497.72 read from T0547.t06.many.frag # found chain 1m9zA in training set T0547 497 :LFLHDVDVE 1m9zA 98 :CIMKEKKKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=104293 # 1n12A.497.92 read from T0547.t06.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)V504 (1n12A)G111 because S (epsilon) conformation "forbidden" or filtered. T0547 497 :LFLHDVD 1n12A 104 :FTPGKIT T0547 505 :E 1n12A 112 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=104295 # 1yu0A.497.97 read from T0547.t06.many.frag # found chain 1yu0A in training set T0547 497 :LFLHDVDVE 1yu0A 98 :ITMPALTAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=104296 # 1r77A.497.82 read from T0547.t06.many.frag # found chain 1r77A in training set Warning: unaligning (T0547)H500 (1r77A)R345 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1r77A)N348 because N (gamma') conformation "forbidden" or filtered. T0547 497 :LFL 1r77A 342 :LPV T0547 501 :DV 1r77A 346 :TW T0547 504 :VE 1r77A 349 :ES Number of specific fragments extracted= 3 number of extra gaps= 2 total=104299 # 1yq2A.497.674 read from T0547.t06.many.frag # found chain 1yq2A in template set T0547 497 :LFLHDVDVE 1yq2A 674 :IALPAMPAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=104300 # 1w9zA.497.246 read from T0547.t06.many.frag # found chain 1w9zA in template set Warning: unaligning (T0547)D501 (1w9zA)T251 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1w9zA)P253 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLH 1w9zA 247 :LPLT T0547 502 :V 1w9zA 252 :I T0547 504 :VE 1w9zA 254 :AV Number of specific fragments extracted= 3 number of extra gaps= 2 total=104303 # 1l2hA.497.79 read from T0547.t06.many.frag # found chain 1l2hA in template set T0547 497 :LFLHDVDVE 1l2hA 80 :LQLESVDPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=104304 # 1at0.497.86 read from T0547.t06.many.frag # found chain 1at0 in template set T0547 497 :LFLHDVDVE 1at0 344 :VFADRIEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=104305 # 1twfB.497.897 read from T0547.t06.many.frag # found chain 1twfB in template set T0547 497 :LFLHDVDVE 1twfB 898 :LIAPGVRVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=104306 # 1qg3A.497.157 read from T0547.t06.many.frag # found chain 1qg3A in template set Warning: unaligning (T0547)D501 (1qg3A)N1287 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1qg3A)R1289 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1qg3A)S1291 because L (left) conformation "forbidden" or filtered. T0547 497 :LFLH 1qg3A 1283 :LLIE T0547 502 :V 1qg3A 1288 :L T0547 504 :V 1qg3A 1290 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=104309 # 1w96A.497.460 read from T0547.t06.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)L497 (1w96A)G473 because S (epsilon) conformation "forbidden" or filtered. T0547 498 :FLHDVDVE 1w96A 474 :TLHELNFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=104310 # 1twfC.497.141 read from T0547.t06.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)H500 (1twfC)C145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1twfC)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 497 :LFL 1twfC 142 :VLI T0547 501 :DVDV 1twfC 146 :KLRK Number of specific fragments extracted= 2 number of extra gaps= 2 total=104312 # 1axiB.497.196 read from T0547.t06.many.frag # found chain 1axiB in template set Warning: unaligning (T0547)L497 (1axiB)V197 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1axiB)S201 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1axiB)K203 because P (beta_P) conformation "forbidden" or filtered. T0547 498 :FLH 1axiB 198 :PVY T0547 502 :V 1axiB 202 :L T0547 504 :VE 1axiB 204 :VD Number of specific fragments extracted= 3 number of extra gaps= 3 total=104315 # 2c3vA.497.39 read from T0547.t06.many.frag # found chain 2c3vA in training set Warning: unaligning (T0547)D503 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c3vA)E125 Warning: unaligning (T0547)E505 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2c3vA)E125 T0547 497 :LFLHDV 2c3vA 117 :VPLTKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=104316 # 1pguA.497.286 read from T0547.t06.many.frag # found chain 1pguA in template set T0547 497 :LFLHDVDVE 1pguA 287 :VQKWTLDKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=104317 # 1gpiA.497.305 read from T0547.t06.many.frag # found chain 1gpiA in training set Warning: unaligning (T0547)D501 (1gpiA)V310 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLH 1gpiA 306 :IQNS T0547 502 :VDVE 1gpiA 311 :ANIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=104319 # 1jb7B.497.94 read from T0547.t06.many.frag # found chain 1jb7B in template set T0547 497 :LFLHDVDVE 1jb7B 95 :LELRRVNSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=104320 # 2bwrA.497.326 read from T0547.t06.many.frag # found chain 2bwrA in training set T0547 497 :LFLHDVDVE 2bwrA 327 :GYNQGWRVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=104321 # 1khxA.497.70 read from T0547.t06.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)D503 (1khxA)S317 because P (beta_P) conformation "forbidden" or filtered. T0547 497 :LFLHDV 1khxA 311 :FCLGLL T0547 504 :VE 1khxA 318 :NV Number of specific fragments extracted= 2 number of extra gaps= 1 total=104323 # 2f69A.497.110 read from T0547.t06.many.frag # found chain 2f69A in training set T0547 497 :LFLHDVDVE 2f69A 216 :VYVAESLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=104324 # 2bm5A.497.139 read from T0547.t06.many.frag # found chain 2bm5A in template set Warning: unaligning (T0547)D501 (2bm5A)D141 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (2bm5A)D143 because D (zeta) conformation "forbidden" or filtered. T0547 497 :LFLH 2bm5A 137 :ARLD T0547 502 :V 2bm5A 142 :A T0547 504 :VE 2bm5A 144 :LR Number of specific fragments extracted= 3 number of extra gaps= 2 total=104327 # 2b5iC.497.152 read from T0547.t06.many.frag # found chain 2b5iC in template set Warning: unaligning (T0547)D501 (2b5iC)S190 because D (zeta) conformation "forbidden" or filtered. T0547 497 :LFLH 2b5iC 186 :FSLP T0547 502 :VDVE 2b5iC 191 :VDGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=104329 # 1p99A.497.222 read from T0547.t06.many.frag # found chain 1p99A in template set Warning: unaligning (T0547)V502 (1p99A)S228 because G (3-10) conformation "forbidden" or filtered. T0547 497 :LFLHD 1p99A 223 :IFLEK T0547 503 :DVE 1p99A 229 :NSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=104331 # 2eulA.497.134 read from T0547.t06.many.frag # found chain 2eulA in template set Warning: unaligning (T0547)L497 (2eulA)G135 because T (delta_L) conformation "forbidden" or filtered. T0547 498 :FLHDVDVE 2eulA 136 :DVLSLDTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=104332 # 1qazA.497.262 read from T0547.t06.many.frag # found chain 1qazA in training set Warning: unaligning (T0547)E505 (1qazA)N274 because L (left) conformation "forbidden" or filtered. T0547 497 :LFLHDVDV 1qazA 266 :IDLYAYKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=104333 # 1l5aA.497.336 read from T0547.t06.many.frag # found chain 1l5aA in template set T0547 497 :LFLHDVDVE 1l5aA 337 :LPFESPHFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=104334 # 1bvoA.497.82 read from T0547.t06.many.frag # found chain 1bvoA in template set T0547 497 :LFLHDVDVE 1bvoA 130 :VCTVEINST Number of specific fragments extracted= 1 number of extra gaps= 0 total=104335 # 1utcA.497.198 read from T0547.t06.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)L497 (1utcA)A199 because Y (epsilon') conformation "forbidden" or filtered. T0547 498 :FLHDVDVE 1utcA 200 :SFAQFKME Number of specific fragments extracted= 1 number of extra gaps= 1 total=104336 # 2bjfA.498.302 read from T0547.t06.many.frag # found chain 2bjfA in training set T0547 498 :FLHDVDVEK 2bjfA 303 :DMNKENLDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=104337 # 1m9zA.498.73 read from T0547.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)D501 (1m9zA)E102 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1m9zA)P106 because P (beta_P) conformation "forbidden" or filtered. T0547 498 :FLH 1m9zA 99 :IMK T0547 502 :VDV 1m9zA 103 :KKK T0547 506 :K 1m9zA 107 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=104340 # 1n12A.498.93 read from T0547.t06.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)K506 (1n12A)N113 because E (beta_S) conformation "forbidden" or filtered. T0547 498 :FLHDVDVE 1n12A 105 :TPGKITGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=104341 # 1pg6A.498.101 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)E505 (1pg6A)G102 because Y (epsilon') conformation "forbidden" or filtered. T0547 498 :FLHDVDV 1pg6A 95 :QIVALEL T0547 506 :K 1pg6A 103 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=104343 # 1w96A.498.461 read from T0547.t06.many.frag # found chain 1w96A in training set T0547 498 :FLHDVDVEK 1w96A 474 :TLHELNFRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=104344 # 1r77A.498.83 read from T0547.t06.many.frag # found chain 1r77A in training set Warning: unaligning (T0547)H500 (1r77A)R345 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1r77A)T346 because P (beta_P) conformation "forbidden" or filtered. T0547 498 :FL 1r77A 343 :PV T0547 502 :VDVEK 1r77A 347 :WNEST Number of specific fragments extracted= 2 number of extra gaps= 1 total=104346 # 1bvoA.498.83 read from T0547.t06.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)D503 (1bvoA)N136 because P (beta_P) conformation "forbidden" or filtered. T0547 498 :FLHDV 1bvoA 131 :CTVEI T0547 504 :VEK 1bvoA 137 :STT Number of specific fragments extracted= 2 number of extra gaps= 1 total=104348 # 1l2hA.498.80 read from T0547.t06.many.frag # found chain 1l2hA in template set T0547 498 :FLHDVDVEK 1l2hA 81 :QLESVDPKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104349 # 1yymG.498.128 read from T0547.t06.many.frag # found chain 1yymG in template set T0547 498 :FLHDVDVEK 1yymG 271 :VIRSENFTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104350 # 1l5aA.498.337 read from T0547.t06.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)D501 (1l5aA)S341 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1l5aA)D346 because L (left) conformation "forbidden" or filtered. T0547 498 :FLH 1l5aA 338 :PFE T0547 502 :VDVE 1l5aA 342 :PHFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=104352 # 2bwrA.498.327 read from T0547.t06.many.frag # found chain 2bwrA in training set T0547 498 :FLHDVDVEK 2bwrA 328 :YNQGWRVDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=104353 # 1gpiA.498.306 read from T0547.t06.many.frag # found chain 1gpiA in training set Warning: unaligning (T0547)D503 (1gpiA)N312 because D (zeta) conformation "forbidden" or filtered. T0547 498 :FLHDV 1gpiA 307 :QNSVA T0547 504 :VEK 1gpiA 313 :IPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=104355 # 1twfB.498.898 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)D501 (1twfB)G902 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1twfB)R904 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1twfB)S906 because Y (epsilon') conformation "forbidden" or filtered. T0547 498 :FLH 1twfB 899 :IAP T0547 502 :V 1twfB 903 :V T0547 504 :V 1twfB 905 :V T0547 506 :K 1twfB 907 :G Number of specific fragments extracted= 4 number of extra gaps= 3 total=104359 # 1twfC.498.142 read from T0547.t06.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)H500 (1twfC)C145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1twfC)K146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1twfC)G150 because T (delta_L) conformation "forbidden" or filtered. T0547 498 :FL 1twfC 143 :LI T0547 502 :VDV 1twfC 147 :LRK T0547 506 :K 1twfC 151 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=104362 # 1yu0A.498.98 read from T0547.t06.many.frag # found chain 1yu0A in training set Warning: unaligning (T0547)E505 (1yu0A)G106 because L (left) conformation "forbidden" or filtered. T0547 498 :FLHDVDV 1yu0A 99 :TMPALTA T0547 506 :K 1yu0A 107 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=104364 # 2eulA.498.135 read from T0547.t06.many.frag # found chain 2eulA in template set T0547 498 :FLHDVDVEK 2eulA 136 :DVLSLDTPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=104365 # 1at0.498.87 read from T0547.t06.many.frag # found chain 1at0 in template set Warning: unaligning (T0547)D503 (1at0)E350 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1at0)K352 because T (delta_L) conformation "forbidden" or filtered. T0547 498 :FLHDV 1at0 345 :FADRI T0547 504 :V 1at0 351 :E T0547 506 :K 1at0 353 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=104368 # 1jb7B.498.95 read from T0547.t06.many.frag # found chain 1jb7B in template set T0547 498 :FLHDVDVEK 1jb7B 96 :ELRRVNSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=104369 # 1khxA.498.71 read from T0547.t06.many.frag # found chain 1khxA in training set T0547 498 :FLHDVDVEK 1khxA 312 :CLGLLSNVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104370 # 2f69A.498.111 read from T0547.t06.many.frag # found chain 2f69A in training set Warning: unaligning (T0547)H500 (2f69A)A219 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (2f69A)S225 because L (left) conformation "forbidden" or filtered. T0547 498 :FL 2f69A 217 :YV T0547 501 :DVDVE 2f69A 220 :ESLIS Number of specific fragments extracted= 2 number of extra gaps= 2 total=104372 # 1p99A.498.223 read from T0547.t06.many.frag # found chain 1p99A in template set Warning: unaligning (T0547)V502 (1p99A)S228 because G (3-10) conformation "forbidden" or filtered. T0547 498 :FLHD 1p99A 224 :FLEK T0547 503 :DVEK 1p99A 229 :NSDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=104374 # 1qg3A.498.158 read from T0547.t06.many.frag # found chain 1qg3A in template set Warning: unaligning (T0547)D501 (1qg3A)N1287 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1qg3A)R1289 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1qg3A)S1291 because L (left) conformation "forbidden" or filtered. T0547 498 :FLH 1qg3A 1284 :LIE T0547 502 :V 1qg3A 1288 :L T0547 504 :V 1qg3A 1290 :E T0547 506 :K 1qg3A 1292 :Q Number of specific fragments extracted= 4 number of extra gaps= 3 total=104378 # 1pguA.498.287 read from T0547.t06.many.frag # found chain 1pguA in template set T0547 498 :FLHDVDVEK 1pguA 288 :QKWTLDKQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=104379 # 1c5eA.498.30 read from T0547.t06.many.frag # found chain 1c5eA in training set Warning: unaligning (T0547)F498 because of BadResidue code BAD_PEPTIDE at template residue (1c5eA)K45 Warning: unaligning (T0547)H500 (1c5eA)V47 because Y (epsilon') conformation "forbidden" or filtered. T0547 499 :L 1c5eA 46 :L T0547 501 :DVDVEK 1c5eA 48 :AWDGTT Number of specific fragments extracted= 2 number of extra gaps= 2 total=104381 # 1axiB.498.197 read from T0547.t06.many.frag # found chain 1axiB in template set T0547 498 :FLHDVDVEK 1axiB 198 :PVYSLKVDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=104382 # 1pguA.498.240 read from T0547.t06.many.frag # found chain 1pguA in template set T0547 498 :FLHDVDVEK 1pguA 241 :FLKYIEDDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=104383 # 1yq2A.498.675 read from T0547.t06.many.frag # found chain 1yq2A in template set T0547 498 :FLHDVDVEK 1yq2A 675 :ALPAMPAAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=104384 # 1t4bA.498.227 read from T0547.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)D503 (1t4bA)Q233 because P (beta_P) conformation "forbidden" or filtered. T0547 498 :FLHDV 1t4bA 228 :PWIDK T0547 504 :VEK 1t4bA 234 :LDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=104386 # 1w9zA.498.247 read from T0547.t06.many.frag # found chain 1w9zA in template set T0547 498 :FLHDVDVEK 1w9zA 248 :PLTTIPAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=104387 # 1txkA.498.170 read from T0547.t06.many.frag # found chain 1txkA in template set T0547 498 :FLHDVDVEK 1txkA 192 :WIERPKPTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=104388 # 1n12A.499.94 read from T0547.t06.many.frag # found chain 1n12A in template set T0547 499 :LHDVDVEKE 1n12A 106 :PGKITGNNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=104389 # 1w96A.499.462 read from T0547.t06.many.frag # found chain 1w96A in training set T0547 499 :LHDVDVEKE 1w96A 475 :LHELNFRSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=104390 # 1pg6A.499.102 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)D501 (1pg6A)A98 because E (beta_S) conformation "forbidden" or filtered. T0547 499 :LH 1pg6A 96 :IV T0547 502 :VDVEKE 1pg6A 99 :LELGEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=104392 # 2bjfA.499.303 read from T0547.t06.many.frag # found chain 2bjfA in training set T0547 499 :LHDVDVEKE 2bjfA 304 :MNKENLDGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104393 # 1m9zA.499.74 read from T0547.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)E505 (1m9zA)P106 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1m9zA)G107 because T (delta_L) conformation "forbidden" or filtered. T0547 499 :LHDVDV 1m9zA 100 :MKEKKK T0547 507 :E 1m9zA 108 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=104395 # 1yymG.499.129 read from T0547.t06.many.frag # found chain 1yymG in template set T0547 499 :LHDVDVEKE 1yymG 272 :IRSENFTNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104396 # 1bvoA.499.84 read from T0547.t06.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)D503 (1bvoA)N136 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :LHDV 1bvoA 132 :TVEI T0547 504 :VEKE 1bvoA 137 :STTM Number of specific fragments extracted= 2 number of extra gaps= 1 total=104398 # 1t4bA.499.228 read from T0547.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)E507 (1t4bA)G237 because T (delta_L) conformation "forbidden" or filtered. T0547 499 :LHDVDVEK 1t4bA 229 :WIDKQLDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=104399 # 1r77A.499.84 read from T0547.t06.many.frag # found chain 1r77A in training set Warning: unaligning (T0547)H500 (1r77A)R345 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1r77A)G352 because T (delta_L) conformation "forbidden" or filtered. T0547 499 :L 1r77A 344 :V T0547 501 :DVDVEK 1r77A 346 :TWNEST Number of specific fragments extracted= 2 number of extra gaps= 2 total=104401 # 1l2hA.499.81 read from T0547.t06.many.frag # found chain 1l2hA in template set T0547 499 :LHDVDVEKE 1l2hA 82 :LESVDPKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=104402 # 2eulA.499.136 read from T0547.t06.many.frag # found chain 2eulA in template set Warning: unaligning (T0547)E507 (2eulA)G145 because Y (epsilon') conformation "forbidden" or filtered. T0547 499 :LHDVDVEK 2eulA 137 :VLSLDTPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=104403 # 2bwrA.499.328 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)E507 (2bwrA)H337 because D (zeta) conformation "forbidden" or filtered. T0547 499 :LHDVDVEK 2bwrA 329 :NQGWRVDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=104404 # 1c5eA.499.31 read from T0547.t06.many.frag # found chain 1c5eA in training set Warning: unaligning (T0547)H500 (1c5eA)V47 because Y (epsilon') conformation "forbidden" or filtered. T0547 499 :L 1c5eA 46 :L T0547 501 :DVDVEKE 1c5eA 48 :AWDGTTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=104406 # 1jb7B.499.96 read from T0547.t06.many.frag # found chain 1jb7B in template set Warning: unaligning (T0547)D501 (1jb7B)R99 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :LH 1jb7B 97 :LR T0547 502 :VDVEKE 1jb7B 100 :VNSAEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=104408 # 1gpiA.499.307 read from T0547.t06.many.frag # found chain 1gpiA in training set Warning: unaligning (T0547)H500 (1gpiA)S309 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :L 1gpiA 308 :N T0547 501 :DVDVEKE 1gpiA 310 :VANIPGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=104410 # 1khxA.499.72 read from T0547.t06.many.frag # found chain 1khxA in training set T0547 499 :LHDVDVEKE 1khxA 313 :LGLLSNVNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=104411 # 1txkA.499.171 read from T0547.t06.many.frag # found chain 1txkA in template set T0547 499 :LHDVDVEKE 1txkA 193 :IERPKPTDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=104412 # 1l5aA.499.338 read from T0547.t06.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)E505 (1l5aA)A345 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1l5aA)D346 because L (left) conformation "forbidden" or filtered. T0547 499 :LHDVDV 1l5aA 339 :FESPHF T0547 507 :E 1l5aA 347 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=104414 # 1pguA.499.241 read from T0547.t06.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)H500 (1pguA)K243 because Y (epsilon') conformation "forbidden" or filtered. T0547 499 :L 1pguA 242 :L T0547 501 :DVDVEKE 1pguA 244 :YIEDDQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=104416 # 2f69A.499.112 read from T0547.t06.many.frag # found chain 2f69A in training set Warning: unaligning (T0547)H500 (2f69A)A219 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (2f69A)S224 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (2f69A)S225 because L (left) conformation "forbidden" or filtered. T0547 499 :L 2f69A 218 :V T0547 501 :DVDV 2f69A 220 :ESLI T0547 507 :E 2f69A 226 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=104419 # 1ln1A.499.119 read from T0547.t06.many.frag # found chain 1ln1A in template set Warning: unaligning (T0547)K506 (1ln1A)G127 because T (delta_L) conformation "forbidden" or filtered. T0547 499 :LHDVDVE 1ln1A 120 :RRDLDME T0547 507 :E 1ln1A 128 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=104421 # 1p99A.499.224 read from T0547.t06.many.frag # found chain 1p99A in template set Warning: unaligning (T0547)V502 (1p99A)S228 because G (3-10) conformation "forbidden" or filtered. T0547 499 :LHD 1p99A 225 :LEK T0547 503 :DVEKE 1p99A 229 :NSDAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=104423 # 1ddlA.499.128 read from T0547.t06.many.frag # found chain 1ddlA in template set Warning: unaligning (T0547)D501 (1ddlA)E131 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :LH 1ddlA 129 :DV T0547 502 :VDVEKE 1ddlA 132 :ANLTNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=104425 # 1r17A.499.183 read from T0547.t06.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)E507 (1r17A)H447 because L (left) conformation "forbidden" or filtered. T0547 499 :LHDVDVEK 1r17A 439 :FTNIDTKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=104426 # 1twfC.499.143 read from T0547.t06.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)H500 (1twfC)C145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1twfC)R148 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1twfC)G150 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1twfC)Q151 because P (beta_P) conformation "forbidden" or filtered. T0547 499 :L 1twfC 144 :I T0547 501 :DV 1twfC 146 :KL T0547 504 :V 1twfC 149 :K T0547 507 :E 1twfC 152 :E Number of specific fragments extracted= 4 number of extra gaps= 3 total=104430 # 1utcA.499.200 read from T0547.t06.many.frag # found chain 1utcA in template set T0547 499 :LHDVDVEKE 1utcA 201 :FAQFKMEGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104431 # 2a6zA.499.182 read from T0547.t06.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)L499 (2a6zA)T188 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (2a6zA)G196 because Y (epsilon') conformation "forbidden" or filtered. T0547 500 :HDVDVEK 2a6zA 189 :RKVRFPS Number of specific fragments extracted= 1 number of extra gaps= 2 total=104432 # 1twfB.499.899 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)H500 (1twfB)P901 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1twfB)G902 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1twfB)S906 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1twfB)G907 because S (epsilon) conformation "forbidden" or filtered. T0547 499 :L 1twfB 900 :A T0547 502 :VDV 1twfB 903 :VRV T0547 507 :E 1twfB 908 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=104435 # 1pguA.499.288 read from T0547.t06.many.frag # found chain 1pguA in template set T0547 499 :LHDVDVEKE 1pguA 289 :KWTLDKQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104436 # 1tyjA.499.75 read from T0547.t06.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)D501 (1tyjA)K79 because D (zeta) conformation "forbidden" or filtered. T0547 499 :LH 1tyjA 77 :MS T0547 502 :VDVEKE 1tyjA 80 :HNLSQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=104438 # 1n12A.500.95 read from T0547.t06.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)D503 (1n12A)T110 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)V504 (1n12A)G111 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1n12A)N113 because E (beta_S) conformation "forbidden" or filtered. T0547 500 :HDV 1n12A 107 :GKI T0547 505 :E 1n12A 112 :N T0547 507 :EN 1n12A 114 :AD Number of specific fragments extracted= 3 number of extra gaps= 2 total=104441 # 1w96A.500.463 read from T0547.t06.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)D503 (1w96A)N479 because N (gamma') conformation "forbidden" or filtered. T0547 500 :HDV 1w96A 476 :HEL T0547 504 :VEKEN 1w96A 480 :FRSSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=104443 # 1pg6A.500.103 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)E505 (1pg6A)G102 because Y (epsilon') conformation "forbidden" or filtered. T0547 500 :HDVDV 1pg6A 97 :VALEL T0547 506 :KEN 1pg6A 103 :EKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=104445 # 1m9zA.500.75 read from T0547.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)K506 (1m9zA)G107 because T (delta_L) conformation "forbidden" or filtered. T0547 500 :HDVDVE 1m9zA 101 :KEKKKP T0547 507 :EN 1m9zA 108 :ET Number of specific fragments extracted= 2 number of extra gaps= 1 total=104447 # 2bjfA.500.304 read from T0547.t06.many.frag # found chain 2bjfA in training set T0547 500 :HDVDVEKEN 2bjfA 305 :NKENLDGNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=104448 # 1bvoA.500.85 read from T0547.t06.many.frag # found chain 1bvoA in template set T0547 500 :HDVDVEKEN 1bvoA 133 :VEINSTTMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=104449 # 1ddlA.500.129 read from T0547.t06.many.frag # found chain 1ddlA in template set T0547 500 :HDVDVEKEN 1ddlA 130 :VEANLTNLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104450 # 1yymG.500.130 read from T0547.t06.many.frag # found chain 1yymG in template set T0547 500 :HDVDVEKEN 1yymG 273 :RSENFTNNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=104451 # 2bwrA.500.329 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)D501 (2bwrA)G331 because T (delta_L) conformation "forbidden" or filtered. T0547 500 :H 2bwrA 330 :Q T0547 502 :VDVEKEN 2bwrA 332 :WRVDKHP Number of specific fragments extracted= 2 number of extra gaps= 1 total=104453 # 1gpiA.500.308 read from T0547.t06.many.frag # found chain 1gpiA in training set Warning: unaligning (T0547)D501 (1gpiA)V310 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1gpiA)N312 because D (zeta) conformation "forbidden" or filtered. T0547 500 :H 1gpiA 309 :S T0547 502 :V 1gpiA 311 :A T0547 504 :VEKEN 1gpiA 313 :IPGVD Number of specific fragments extracted= 3 number of extra gaps= 2 total=104456 # 2a6zA.500.183 read from T0547.t06.many.frag # found chain 2a6zA in training set T0547 500 :HDVDVEKEN 2a6zA 189 :RKVRFPSGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=104457 # 1r17A.500.184 read from T0547.t06.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)D501 (1r17A)N441 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1r17A)H447 because L (left) conformation "forbidden" or filtered. T0547 500 :H 1r17A 440 :T T0547 502 :VDVEK 1r17A 442 :IDTKN T0547 508 :N 1r17A 448 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=104460 # 1pguA.500.242 read from T0547.t06.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)H500 (1pguA)K243 because Y (epsilon') conformation "forbidden" or filtered. T0547 501 :DVDVEKEN 1pguA 244 :YIEDDQEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=104461 # 1l5aA.500.339 read from T0547.t06.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)H500 (1l5aA)E340 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D501 (1l5aA)S341 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D503 (1l5aA)H343 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1l5aA)D346 because L (left) conformation "forbidden" or filtered. T0547 502 :V 1l5aA 342 :P T0547 504 :VE 1l5aA 344 :FA T0547 507 :EN 1l5aA 347 :CQ Number of specific fragments extracted= 3 number of extra gaps= 3 total=104464 # 1t4bA.500.229 read from T0547.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)E507 (1t4bA)G237 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1t4bA)Q238 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDVDVEK 1t4bA 230 :IDKQLDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=104465 # 1r77A.500.85 read from T0547.t06.many.frag # found chain 1r77A in training set Warning: unaligning (T0547)H500 (1r77A)R345 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1r77A)T351 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1r77A)G352 because T (delta_L) conformation "forbidden" or filtered. T0547 501 :DVDVE 1r77A 346 :TWNES T0547 508 :N 1r77A 353 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=104467 # 1tyjA.500.76 read from T0547.t06.many.frag # found chain 1tyjA in template set T0547 500 :HDVDVEKEN 1tyjA 78 :SKHNLSQGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104468 # 2eulA.500.137 read from T0547.t06.many.frag # found chain 2eulA in template set T0547 500 :HDVDVEKEN 2eulA 138 :LSLDTPKGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=104469 # 1l2hA.500.82 read from T0547.t06.many.frag # found chain 1l2hA in template set Warning: unaligning (T0547)N508 (1l2hA)P91 because C (cis) conformation "forbidden" or filtered. T0547 500 :HDVDVEKE 1l2hA 83 :ESVDPKNY Number of specific fragments extracted= 1 number of extra gaps= 1 total=104470 # 1khxA.500.73 read from T0547.t06.many.frag # found chain 1khxA in training set T0547 500 :HDVDVEKEN 1khxA 314 :GLLSNVNRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104471 # 1ln1A.500.120 read from T0547.t06.many.frag # found chain 1ln1A in template set Warning: unaligning (T0547)K506 (1ln1A)G127 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1ln1A)R128 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDVDVE 1ln1A 121 :RDLDME T0547 508 :N 1ln1A 129 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=104473 # 2f69A.500.113 read from T0547.t06.many.frag # found chain 2f69A in training set Warning: unaligning (T0547)H500 (2f69A)A219 because Y (epsilon') conformation "forbidden" or filtered. T0547 501 :DVDVEKEN 2f69A 220 :ESLISSAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=104474 # 1twfB.500.900 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)H500 (1twfB)P901 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1twfB)S906 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1twfB)D909 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DVDV 1twfB 902 :GVRV T0547 506 :KE 1twfB 907 :GE Number of specific fragments extracted= 2 number of extra gaps= 3 total=104476 # 1c5eA.500.32 read from T0547.t06.many.frag # found chain 1c5eA in training set Warning: unaligning (T0547)H500 (1c5eA)V47 because Y (epsilon') conformation "forbidden" or filtered. T0547 501 :DVDVEKEN 1c5eA 48 :AWDGTTDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=104477 # 1utcA.500.201 read from T0547.t06.many.frag # found chain 1utcA in template set Warning: unaligning (T0547)K506 (1utcA)G208 because T (delta_L) conformation "forbidden" or filtered. T0547 500 :HDVDVE 1utcA 202 :AQFKME T0547 507 :EN 1utcA 209 :NA Number of specific fragments extracted= 2 number of extra gaps= 1 total=104479 # 1jg5A.500.6 read from T0547.t06.many.frag # found chain 1jg5A in template set Warning: unaligning (T0547)V502 because of BadResidue code BAD_PEPTIDE in next template residue (1jg5A)R10 Warning: unaligning (T0547)D503 because of BadResidue code BAD_PEPTIDE at template residue (1jg5A)R10 Warning: unaligning (T0547)N508 (1jg5A)P15 because C (cis) conformation "forbidden" or filtered. T0547 500 :HD 1jg5A 7 :TQ T0547 504 :VEKE 1jg5A 11 :MEVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=104481 # 1txkA.500.172 read from T0547.t06.many.frag # found chain 1txkA in template set Warning: unaligning (T0547)D503 (1txkA)K197 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1txkA)D200 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDV 1txkA 194 :ERP T0547 504 :VE 1txkA 198 :PT T0547 507 :EN 1txkA 201 :KR Number of specific fragments extracted= 3 number of extra gaps= 2 total=104484 # 1jb7B.500.97 read from T0547.t06.many.frag # found chain 1jb7B in template set T0547 500 :HDVDVEKEN 1jb7B 98 :RRVNSAEVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=104485 # 1lm8V.500.84 read from T0547.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)D503 (1lm8V)N141 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1lm8V)G144 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1lm8V)Q145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1lm8V)P146 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDV 1lm8V 138 :PSL T0547 504 :V 1lm8V 142 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=104487 # 2brfA.500.21 read from T0547.t06.many.frag # found chain 2brfA in training set Warning: unaligning (T0547)E505 (2brfA)D27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (2brfA)G28 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2brfA)A30 because P (beta_P) conformation "forbidden" or filtered. T0547 500 :HDVDV 2brfA 22 :IFLPS T0547 507 :E 2brfA 29 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=104489 # 1w96A.501.464 read from T0547.t06.many.frag # found chain 1w96A in training set T0547 501 :DVDVEKENY 1w96A 477 :ELNFRSSSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104490 # 2a6zA.501.184 read from T0547.t06.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)N508 (2a6zA)S197 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DVDVEKE 2a6zA 190 :KVRFPSG T0547 509 :Y 2a6zA 198 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=104492 # 1n12A.501.96 read from T0547.t06.many.frag # found chain 1n12A in template set T0547 501 :DVDVEKENY 1n12A 108 :KITGNNADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=104493 # 1pg6A.501.104 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)E505 (1pg6A)G102 because Y (epsilon') conformation "forbidden" or filtered. T0547 501 :DVDV 1pg6A 98 :ALEL T0547 506 :KENY 1pg6A 103 :EKQY Number of specific fragments extracted= 2 number of extra gaps= 1 total=104495 # 1tyjA.501.77 read from T0547.t06.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)E507 (1tyjA)G85 because L (left) conformation "forbidden" or filtered. T0547 501 :DVDVEK 1tyjA 79 :KHNLSQ T0547 508 :NY 1tyjA 86 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=104497 # 1m9zA.501.76 read from T0547.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)E507 (1m9zA)E108 because Y (epsilon') conformation "forbidden" or filtered. T0547 501 :DVDVEK 1m9zA 102 :EKKKPG T0547 508 :NY 1m9zA 109 :TF Number of specific fragments extracted= 2 number of extra gaps= 1 total=104499 # 1r17A.501.185 read from T0547.t06.many.frag # found chain 1r17A in template set T0547 501 :DVDVEKENY 1r17A 441 :NIDTKNHTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104500 # 1bvoA.501.86 read from T0547.t06.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)D501 (1bvoA)E134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1bvoA)M140 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1bvoA)S141 because E (beta_S) conformation "forbidden" or filtered. T0547 502 :VDVEK 1bvoA 135 :INSTT T0547 509 :Y 1bvoA 142 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=104502 # 2bjfA.501.305 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)N508 (2bjfA)E313 because E (beta_S) conformation "forbidden" or filtered. T0547 501 :DVDVEKE 2bjfA 306 :KENLDGN T0547 509 :Y 2bjfA 314 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=104504 # 1ddlA.501.130 read from T0547.t06.many.frag # found chain 1ddlA in template set T0547 501 :DVDVEKENY 1ddlA 131 :EANLTNLNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=104505 # 1yymG.501.131 read from T0547.t06.many.frag # found chain 1yymG in template set Warning: unaligning (T0547)D501 (1yymG)S274 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1yymG)A281 because G (3-10) conformation "forbidden" or filtered. T0547 502 :VDVEKE 1yymG 275 :ENFTNN T0547 509 :Y 1yymG 282 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=104507 # 1l5aA.501.340 read from T0547.t06.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)K506 (1l5aA)D346 because L (left) conformation "forbidden" or filtered. T0547 501 :DVDVE 1l5aA 341 :SPHFA T0547 507 :ENY 1l5aA 347 :CQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=104509 # 2bwrA.501.330 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)D501 (2bwrA)G331 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (2bwrA)H337 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2bwrA)P338 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :VDVEK 2bwrA 332 :WRVDK T0547 509 :Y 2bwrA 339 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=104511 # 1t4bA.501.230 read from T0547.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)D501 (1t4bA)D231 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1t4bA)N236 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1t4bA)G237 because T (delta_L) conformation "forbidden" or filtered. T0547 502 :VDVE 1t4bA 232 :KQLD T0547 508 :NY 1t4bA 238 :QS Number of specific fragments extracted= 2 number of extra gaps= 2 total=104513 # 1twfB.501.901 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)K506 (1twfB)G907 because S (epsilon) conformation "forbidden" or filtered. T0547 501 :DVDVE 1twfB 902 :GVRVS T0547 507 :ENY 1twfB 908 :EDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=104515 # 1pguA.501.243 read from T0547.t06.many.frag # found chain 1pguA in template set T0547 501 :DVDVEKENY 1pguA 244 :YIEDDQEPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104516 # 1ln1A.501.121 read from T0547.t06.many.frag # found chain 1ln1A in template set Warning: unaligning (T0547)E507 (1ln1A)R128 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DVDVEK 1ln1A 122 :DLDMEG T0547 508 :NY 1ln1A 129 :KI Number of specific fragments extracted= 2 number of extra gaps= 1 total=104518 # 1gpiA.501.309 read from T0547.t06.many.frag # found chain 1gpiA in training set Warning: unaligning (T0547)D501 (1gpiA)V310 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1gpiA)P314 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1gpiA)D317 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :VDV 1gpiA 311 :ANI T0547 506 :KE 1gpiA 315 :GV T0547 509 :Y 1gpiA 318 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=104521 # 1jg5A.501.7 read from T0547.t06.many.frag # found chain 1jg5A in template set Warning: unaligning (T0547)D501 (1jg5A)Q8 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)V502 because of BadResidue code BAD_PEPTIDE in next template residue (1jg5A)R10 Warning: unaligning (T0547)D503 because of BadResidue code BAD_PEPTIDE at template residue (1jg5A)R10 Warning: unaligning (T0547)N508 (1jg5A)P15 because C (cis) conformation "forbidden" or filtered. T0547 504 :VEKE 1jg5A 11 :MEVG T0547 509 :Y 1jg5A 16 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=104523 # 1pmhX.501.37 read from T0547.t06.many.frag # found chain 1pmhX in training set T0547 501 :DVDVEKENY 1pmhX 38 :DLQRPGNKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=104524 # 1a8d.501.212 read from T0547.t06.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)E507 (1a8d)Q219 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1a8d)Y220 because Y (epsilon') conformation "forbidden" or filtered. T0547 501 :DVDVEK 1a8d 213 :RCNNNN T0547 509 :Y 1a8d 221 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=104526 # 2f69A.501.114 read from T0547.t06.many.frag # found chain 2f69A in training set Warning: unaligning (T0547)E505 (2f69A)S224 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (2f69A)S225 because L (left) conformation "forbidden" or filtered. T0547 501 :DVDV 2f69A 220 :ESLI T0547 507 :ENY 2f69A 226 :AGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=104528 # 2eulA.501.138 read from T0547.t06.many.frag # found chain 2eulA in template set T0547 501 :DVDVEKENY 2eulA 139 :SLDTPKGRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=104529 # 1o0sA.501.463 read from T0547.t06.many.frag # found chain 1o0sA in template set Warning: unaligning (T0547)D501 (1o0sA)N464 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (1o0sA)N468 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1o0sA)T471 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :VDV 1o0sA 465 :FEL T0547 506 :KE 1o0sA 469 :GH T0547 509 :Y 1o0sA 472 :Y Number of specific fragments extracted= 3 number of extra gaps= 3 total=104532 # 1r77A.501.86 read from T0547.t06.many.frag # found chain 1r77A in training set Warning: unaligning (T0547)N508 (1r77A)E353 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DVDVEKE 1r77A 346 :TWNESTG T0547 509 :Y 1r77A 354 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=104534 # 1lm8V.501.85 read from T0547.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)D501 (1lm8V)S139 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1lm8V)G144 because L (left) conformation "forbidden" or filtered. T0547 502 :VDVE 1lm8V 140 :LNVD T0547 507 :ENY 1lm8V 145 :QPI Number of specific fragments extracted= 2 number of extra gaps= 2 total=104536 # 2f6eA.501.83 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)K506 (2f6eA)G90 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (2f6eA)N91 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DVDVE 2f6eA 85 :WQTIN T0547 508 :NY 2f6eA 92 :MY Number of specific fragments extracted= 2 number of extra gaps= 1 total=104538 # 1txkA.501.173 read from T0547.t06.many.frag # found chain 1txkA in template set T0547 501 :DVDVEKENY 1txkA 195 :RPKPTDKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104539 # 1p3dA.501.331 read from T0547.t06.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)N508 (1p3dA)K339 because P (beta_P) conformation "forbidden" or filtered. T0547 501 :DVDVEKE 1p3dA 332 :EFIRPNG T0547 509 :Y 1p3dA 340 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=104541 # 1p99A.501.226 read from T0547.t06.many.frag # found chain 1p99A in template set T0547 501 :DVDVEKENY 1p99A 227 :KSNSDAVKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=104542 # 2a6zA.502.185 read from T0547.t06.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)E505 (2a6zA)P194 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (2a6zA)S195 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (2a6zA)G196 because Y (epsilon') conformation "forbidden" or filtered. T0547 502 :VDV 2a6zA 191 :VRF T0547 508 :NYF 2a6zA 197 :SYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=104544 # 1w96A.502.465 read from T0547.t06.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)E507 (1w96A)S483 because E (beta_S) conformation "forbidden" or filtered. T0547 502 :VDVEK 1w96A 478 :LNFRS T0547 508 :NYF 1w96A 484 :SNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=104546 # 1n12A.502.97 read from T0547.t06.many.frag # found chain 1n12A in template set T0547 502 :VDVEKENYF 1n12A 109 :ITGNNADKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=104547 # 1tyjA.502.78 read from T0547.t06.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)D503 (1tyjA)N81 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1tyjA)G85 because L (left) conformation "forbidden" or filtered. T0547 502 :V 1tyjA 80 :H T0547 504 :VEK 1tyjA 82 :LSQ T0547 508 :NYF 1tyjA 86 :VLN Number of specific fragments extracted= 3 number of extra gaps= 2 total=104550 # 1m9zA.502.77 read from T0547.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)E505 (1m9zA)P106 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1m9zA)G107 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1m9zA)E108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1m9zA)T109 because E (beta_S) conformation "forbidden" or filtered. T0547 502 :VDV 1m9zA 103 :KKK T0547 509 :YF 1m9zA 110 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=104552 # 1pg6A.502.105 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)E505 (1pg6A)G102 because Y (epsilon') conformation "forbidden" or filtered. T0547 502 :VDV 1pg6A 99 :LEL T0547 506 :KENYF 1pg6A 103 :EKQYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=104554 # 1r17A.502.186 read from T0547.t06.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)E507 (1r17A)H447 because L (left) conformation "forbidden" or filtered. T0547 502 :VDVEK 1r17A 442 :IDTKN T0547 508 :NYF 1r17A 448 :TVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=104556 # 1yymG.502.132 read from T0547.t06.many.frag # found chain 1yymG in template set T0547 502 :VDVEKENYF 1yymG 275 :ENFTNNAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=104557 # 1bvoA.502.87 read from T0547.t06.many.frag # found chain 1bvoA in template set Warning: unaligning (T0547)E507 (1bvoA)M140 because L (left) conformation "forbidden" or filtered. T0547 502 :VDVEK 1bvoA 135 :INSTT T0547 508 :NYF 1bvoA 141 :SYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=104559 # 1t4bA.502.231 read from T0547.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)E507 (1t4bA)G237 because T (delta_L) conformation "forbidden" or filtered. T0547 502 :VDVEK 1t4bA 232 :KQLDN T0547 508 :NYF 1t4bA 238 :QSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=104561 # 2bjfA.502.306 read from T0547.t06.many.frag # found chain 2bjfA in training set Warning: unaligning (T0547)K506 (2bjfA)G311 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :VDVE 2bjfA 307 :ENLD T0547 507 :ENYF 2bjfA 312 :NEIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=104563 # 1l5aA.502.341 read from T0547.t06.many.frag # found chain 1l5aA in template set Warning: unaligning (T0547)D503 (1l5aA)H343 because P (beta_P) conformation "forbidden" or filtered. T0547 502 :V 1l5aA 342 :P T0547 504 :VEKENYF 1l5aA 344 :FADCQTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=104565 # 1ddlA.502.131 read from T0547.t06.many.frag # found chain 1ddlA in template set T0547 502 :VDVEKENYF 1ddlA 132 :ANLTNLNPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=104566 # 1ln1A.502.122 read from T0547.t06.many.frag # found chain 1ln1A in template set T0547 502 :VDVEKENYF 1ln1A 123 :LDMEGRKIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=104567 # 1a8d.502.213 read from T0547.t06.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)E507 (1a8d)Q219 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1a8d)Y220 because Y (epsilon') conformation "forbidden" or filtered. T0547 502 :VDVEK 1a8d 214 :CNNNN T0547 509 :YF 1a8d 221 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=104569 # 1jg5A.502.8 read from T0547.t06.many.frag # found chain 1jg5A in template set Warning: unaligning (T0547)V502 because of BadResidue code BAD_PEPTIDE in next template residue (1jg5A)R10 Warning: unaligning (T0547)D503 because of BadResidue code BAD_PEPTIDE at template residue (1jg5A)R10 Warning: unaligning (T0547)N508 (1jg5A)P15 because C (cis) conformation "forbidden" or filtered. T0547 504 :VEKE 1jg5A 11 :MEVG T0547 509 :YF 1jg5A 16 :TM Number of specific fragments extracted= 2 number of extra gaps= 2 total=104571 # 1txkA.502.174 read from T0547.t06.many.frag # found chain 1txkA in template set T0547 502 :VDVEKENYF 1txkA 196 :PKPTDKRLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=104572 # 1pmhX.502.38 read from T0547.t06.many.frag # found chain 1pmhX in training set T0547 502 :VDVEKENYF 1pmhX 39 :LQRPGNKYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=104573 # 2bwrA.502.331 read from T0547.t06.many.frag # found chain 2bwrA in training set Warning: unaligning (T0547)D503 (2bwrA)R333 because E (beta_S) conformation "forbidden" or filtered. T0547 502 :V 2bwrA 332 :W T0547 504 :VEKENYF 2bwrA 334 :VDKHPRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=104575 # 1twfB.502.902 read from T0547.t06.many.frag # found chain 1twfB in template set T0547 502 :VDVEKENYF 1twfB 903 :VRVSGEDVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=104576 # 1pguA.502.244 read from T0547.t06.many.frag # found chain 1pguA in template set Warning: unaligning (T0547)D503 (1pguA)E246 because E (beta_S) conformation "forbidden" or filtered. T0547 502 :V 1pguA 245 :I T0547 504 :VEKENYF 1pguA 247 :DDQEPVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=104578 # 2f69A.502.115 read from T0547.t06.many.frag # found chain 2f69A in training set Warning: unaligning (T0547)K506 (2f69A)S225 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2f69A)G227 because S (epsilon) conformation "forbidden" or filtered. T0547 502 :VDVE 2f69A 221 :SLIS T0547 507 :E 2f69A 226 :A T0547 509 :YF 2f69A 228 :EG Number of specific fragments extracted= 3 number of extra gaps= 2 total=104581 # 1lm8V.502.86 read from T0547.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)E505 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1lm8V)G144 because L (left) conformation "forbidden" or filtered. T0547 502 :VDV 1lm8V 140 :LNV T0547 507 :ENYF 1lm8V 145 :QPIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=104583 # 2eulA.502.139 read from T0547.t06.many.frag # found chain 2eulA in template set Warning: unaligning (T0547)E507 (2eulA)G145 because Y (epsilon') conformation "forbidden" or filtered. T0547 502 :VDVEK 2eulA 140 :LDTPK T0547 508 :NYF 2eulA 146 :RRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=104585 # 1dmhA.502.182 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E507 (1dmhA)G188 because L (left) conformation "forbidden" or filtered. T0547 502 :VDVEK 1dmhA 183 :ITDEN T0547 508 :NYF 1dmhA 189 :QYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=104587 # 1tzlA.502.436 read from T0547.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)D503 (1tzlA)F439 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1tzlA)H443 because D (zeta) conformation "forbidden" or filtered. T0547 502 :V 1tzlA 438 :L T0547 504 :VEK 1tzlA 440 :QPS T0547 508 :NYF 1tzlA 444 :PWH Number of specific fragments extracted= 3 number of extra gaps= 2 total=104590 # 2f6eA.502.84 read from T0547.t06.many.frag # found chain 2f6eA in template set T0547 502 :VDVEKENYF 2f6eA 86 :QTINGNMYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=104591 # 1kcmA.502.181 read from T0547.t06.many.frag # found chain 1kcmA in template set T0547 502 :VDVEKENYF 1kcmA 183 :VNQKDCPYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=104592 # 1p3dA.502.332 read from T0547.t06.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)D503 (1p3dA)I334 because N (gamma') conformation "forbidden" or filtered. T0547 502 :V 1p3dA 333 :F T0547 504 :VEKENYF 1p3dA 335 :RPNGKVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=104594 # 1thqA.502.94 read from T0547.t06.many.frag # found chain 1thqA in template set T0547 502 :VDVEKENYF 1thqA 94 :RPLADENFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=104595 # 2a6zA.503.186 read from T0547.t06.many.frag # found chain 2a6zA in training set T0547 503 :DVEKENYFL 2a6zA 192 :RFPSGSYRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=104596 # 1w96A.503.466 read from T0547.t06.many.frag # found chain 1w96A in training set T0547 503 :DVEKENYFL 1w96A 479 :NFRSSSNVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=104597 # 1tyjA.503.79 read from T0547.t06.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)E507 (1tyjA)G85 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L511 (1tyjA)F89 because Y (epsilon') conformation "forbidden" or filtered. T0547 503 :DVEK 1tyjA 81 :NLSQ T0547 508 :NYF 1tyjA 86 :VLN Number of specific fragments extracted= 2 number of extra gaps= 2 total=104599 # 1n12A.503.98 read from T0547.t06.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)V504 (1n12A)G111 because S (epsilon) conformation "forbidden" or filtered. T0547 503 :D 1n12A 110 :T T0547 505 :EKENYFL 1n12A 112 :NNADKTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=104601 # 1r17A.503.187 read from T0547.t06.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)E507 (1r17A)H447 because L (left) conformation "forbidden" or filtered. T0547 503 :DVEK 1r17A 443 :DTKN T0547 508 :NYFL 1r17A 448 :TVEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=104603 # 1yymG.503.133 read from T0547.t06.many.frag # found chain 1yymG in template set T0547 503 :DVEKENYFL 1yymG 276 :NFTNNAKTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=104604 # 1txkA.503.175 read from T0547.t06.many.frag # found chain 1txkA in template set T0547 503 :DVEKENYFL 1txkA 197 :KPTDKRLTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=104605 # 1t4bA.503.232 read from T0547.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)E507 (1t4bA)G237 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DVEK 1t4bA 233 :QLDN T0547 508 :NYFL 1t4bA 238 :QSRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=104607 # 1m9zA.503.78 read from T0547.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)E505 (1m9zA)P106 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1m9zA)G107 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DV 1m9zA 104 :KK T0547 507 :ENYFL 1m9zA 108 :ETFFM Number of specific fragments extracted= 2 number of extra gaps= 1 total=104609 # 1kcmA.503.182 read from T0547.t06.many.frag # found chain 1kcmA in template set Warning: unaligning (T0547)E505 (1kcmA)K186 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1kcmA)P189 because P (beta_P) conformation "forbidden" or filtered. T0547 503 :DV 1kcmA 184 :NQ T0547 506 :KE 1kcmA 187 :DC T0547 509 :YFL 1kcmA 190 :YMC Number of specific fragments extracted= 3 number of extra gaps= 2 total=104612 # 1lm8V.503.87 read from T0547.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)E505 (1lm8V)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1lm8V)G144 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1lm8V)P146 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L511 (1lm8V)A149 because D (zeta) conformation "forbidden" or filtered. T0547 503 :DV 1lm8V 141 :NV T0547 507 :E 1lm8V 145 :Q T0547 509 :YF 1lm8V 147 :IF Number of specific fragments extracted= 3 number of extra gaps= 3 total=104615 # 1dmhA.503.183 read from T0547.t06.many.frag # found chain 1dmhA in training set T0547 503 :DVEKENYFL 1dmhA 184 :TDENGQYRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104616 # 1qz8A.503.33 read from T0547.t06.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)V504 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1qz8A)K36 Warning: unaligning (T0547)E505 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1qz8A)K36 T0547 503 :D 1qz8A 34 :N T0547 506 :KENYFL 1qz8A 37 :GGRFVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=104618 # 1pg6A.503.106 read from T0547.t06.many.frag # found chain 1pg6A in training set Warning: unaligning (T0547)E505 (1pg6A)G102 because Y (epsilon') conformation "forbidden" or filtered. T0547 503 :DV 1pg6A 100 :EL T0547 506 :KENYFL 1pg6A 103 :EKQYRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=104620 # 2bpa2.503.133 read from T0547.t06.many.frag # found chain 2bpa2 in template set T0547 503 :DVEKENYFL 2bpa2 134 :RTPGNNVYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104621 # 1bvoA.503.88 read from T0547.t06.many.frag # found chain 1bvoA in template set T0547 503 :DVEKENYFL 1bvoA 136 :NSTTMSYTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=104622 # 1ddlA.503.132 read from T0547.t06.many.frag # found chain 1ddlA in template set Warning: unaligning (T0547)V504 (1ddlA)L134 because G (3-10) conformation "forbidden" or filtered. T0547 503 :D 1ddlA 133 :N T0547 505 :EKENYFL 1ddlA 135 :TNLNPII Number of specific fragments extracted= 2 number of extra gaps= 1 total=104624 # 1a8d.503.214 read from T0547.t06.many.frag # found chain 1a8d in training set Warning: unaligning (T0547)N508 (1a8d)Y220 because Y (epsilon') conformation "forbidden" or filtered. T0547 503 :DVEKE 1a8d 215 :NNNNQ T0547 509 :YFL 1a8d 221 :VSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=104626 # 1thqA.503.95 read from T0547.t06.many.frag # found chain 1thqA in template set T0547 503 :DVEKENYFL 1thqA 95 :PLADENFHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104627 # 1ln1A.503.123 read from T0547.t06.many.frag # found chain 1ln1A in template set Warning: unaligning (T0547)E505 (1ln1A)E126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1ln1A)G127 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DV 1ln1A 124 :DM T0547 507 :ENYFL 1ln1A 128 :RKIHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=104629 # 1pmhX.503.39 read from T0547.t06.many.frag # found chain 1pmhX in training set Warning: unaligning (T0547)K506 (1pmhX)G43 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DVE 1pmhX 40 :QRP T0547 507 :ENYFL 1pmhX 44 :NKYAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=104631 # 1jg5A.503.9 read from T0547.t06.many.frag # found chain 1jg5A in template set Warning: unaligning (T0547)D503 because of BadResidue code BAD_PEPTIDE at template residue (1jg5A)R10 Warning: unaligning (T0547)N508 (1jg5A)P15 because C (cis) conformation "forbidden" or filtered. T0547 504 :VEKE 1jg5A 11 :MEVG T0547 509 :YFL 1jg5A 16 :TMV Number of specific fragments extracted= 2 number of extra gaps= 2 total=104633 # 1v2bA.503.110 read from T0547.t06.many.frag # found chain 1v2bA in training set Warning: unaligning (T0547)E505 (1v2bA)G122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1v2bA)G123 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DV 1v2bA 120 :EV T0547 507 :ENYFL 1v2bA 124 :KQYYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=104635 # 1tzlA.503.437 read from T0547.t06.many.frag # found chain 1tzlA in template set T0547 503 :DVEKENYFL 1tzlA 439 :FQPSHPWHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=104636 # 1v04A.503.120 read from T0547.t06.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)E507 (1v04A)N125 because T (delta_L) conformation "forbidden" or filtered. T0547 503 :DVEK 1v04A 121 :IDDD T0547 508 :NYFL 1v04A 126 :TVYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=104638 # 2eulA.503.140 read from T0547.t06.many.frag # found chain 2eulA in template set Warning: unaligning (T0547)E507 (2eulA)G145 because Y (epsilon') conformation "forbidden" or filtered. T0547 503 :DVEK 2eulA 141 :DTPK T0547 508 :NYFL 2eulA 146 :RREF Number of specific fragments extracted= 2 number of extra gaps= 1 total=104640 # 2f6eA.503.85 read from T0547.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0547)D503 (2f6eA)T87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E505 (2f6eA)N89 because L (left) conformation "forbidden" or filtered. T0547 504 :V 2f6eA 88 :I T0547 506 :KENYFL 2f6eA 90 :GNMYYF Number of specific fragments extracted= 2 number of extra gaps= 2 total=104642 # 2bjfA.503.307 read from T0547.t06.many.frag # found chain 2bjfA in training set T0547 503 :DVEKENYFL 2bjfA 308 :NLDGNEIKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=104643 # 1twfB.503.903 read from T0547.t06.many.frag # found chain 1twfB in template set Warning: unaligning (T0547)E505 (1twfB)S906 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1twfB)G907 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1twfB)D909 because P (beta_P) conformation "forbidden" or filtered. T0547 503 :DV 1twfB 904 :RV T0547 507 :E 1twfB 908 :E T0547 509 :YFL 1twfB 910 :VII Number of specific fragments extracted= 3 number of extra gaps= 2 total=104646 # 3eipA.503.66 read from T0547.t06.many.frag # found chain 3eipA in training set T0547 503 :DVEKENYFL 3eipA 67 :DISDNEYFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104647 # 2a6zA.504.187 read from T0547.t06.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)N508 (2a6zA)S197 because P (beta_P) conformation "forbidden" or filtered. T0547 504 :VEKE 2a6zA 193 :FPSG T0547 509 :YFLG 2a6zA 198 :YRIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=104649 # 1w96A.504.467 read from T0547.t06.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)Y509 (1w96A)N485 because G (3-10) conformation "forbidden" or filtered. T0547 504 :VEKEN 1w96A 480 :FRSSS T0547 510 :FLG 1w96A 486 :VWG Number of specific fragments extracted= 2 number of extra gaps= 1 total=104651 # 1tyjA.504.80 read from T0547.t06.many.frag # found chain 1tyjA in template set T0547 504 :VEKENYFLG 1tyjA 82 :LSQGVLNFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=104652 # 1yymG.504.134 read from T0547.t06.many.frag # found chain 1yymG in template set T0547 504 :VEKENYFLG 1yymG 277 :FTNNAKTII Number of specific fragments extracted= 1 number of extra gaps= 0 total=104653 # 1kcmA.504.183 read from T0547.t06.many.frag # found chain 1kcmA in template set Warning: unaligning (T0547)K506 (1kcmA)D187 because T (delta_L) conformation "forbidden" or filtered. T0547 504 :VE 1kcmA 185 :QK T0547 507 :ENYFLG 1kcmA 188 :CPYMCA Number of specific fragments extracted= 2 number of extra gaps= 1 total=104655 # 1thqA.504.96 read from T0547.t06.many.frag # found chain 1thqA in template set T0547 504 :VEKENYFLG 1thqA 96 :LADENFHLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=104656 # 1lm8V.504.88 read from T0547.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0547)E507 (1lm8V)Q145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1lm8V)P146 because P (beta_P) conformation "forbidden" or filtered. T0547 504 :VEK 1lm8V 142 :VDG T0547 509 :YFLG 1lm8V 147 :IFAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=104658 # 1qz8A.504.34 read from T0547.t06.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)V504 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1qz8A)K36 Warning: unaligning (T0547)E505 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1qz8A)K36 Warning: unaligning (T0547)E507 (1qz8A)G38 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1qz8A)A43 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :K 1qz8A 37 :G T0547 508 :NYFL 1qz8A 39 :RFVL Number of specific fragments extracted= 2 number of extra gaps= 3 total=104660 # 1v04A.504.121 read from T0547.t06.many.frag # found chain 1v04A in template set T0547 504 :VEKENYFLG 1v04A 122 :DDDNTVYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104661 # 1m9zA.504.79 read from T0547.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0547)E505 (1m9zA)P106 because P (beta_P) conformation "forbidden" or filtered. T0547 504 :V 1m9zA 105 :K T0547 506 :KENYFLG 1m9zA 107 :GETFFMC Number of specific fragments extracted= 2 number of extra gaps= 1 total=104663 # 2bpa2.504.134 read from T0547.t06.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0547)E507 (2bpa2)N138 because P (beta_P) conformation "forbidden" or filtered. T0547 504 :VEK 2bpa2 135 :TPG T0547 508 :NYFLG 2bpa2 139 :NVYVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=104665 # 1tg7A.504.748 read from T0547.t06.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)E505 (1tg7A)S790 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1tg7A)G791 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1tg7A)K792 because P (beta_P) conformation "forbidden" or filtered. T0547 504 :V 1tg7A 789 :Q T0547 508 :NYFLG 1tg7A 793 :NYVIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=104667 # 1dmhA.504.184 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E507 (1dmhA)G188 because L (left) conformation "forbidden" or filtered. T0547 504 :VEK 1dmhA 185 :DEN T0547 508 :NYFLG 1dmhA 189 :QYRVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=104669 # 1r17A.504.188 read from T0547.t06.many.frag # found chain 1r17A in template set Warning: unaligning (T0547)N508 (1r17A)T448 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VEKE 1r17A 444 :TKNH T0547 509 :YFLG 1r17A 449 :VEQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=104671 # 1t7lA.504.688 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)E507 (1t7lA)W660 because P (beta_P) conformation "forbidden" or filtered. T0547 504 :VEK 1t7lA 657 :FKG T0547 508 :NYFLG 1t7lA 661 :IKQIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=104673 # 1k8wA.504.297 read from T0547.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)E505 (1k8wA)G286 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. T0547 504 :V 1k8wA 285 :E T0547 506 :KE 1k8wA 287 :EN T0547 509 :YFLG 1k8wA 290 :KFIG Number of specific fragments extracted= 3 number of extra gaps= 2 total=104676 # 1txkA.504.176 read from T0547.t06.many.frag # found chain 1txkA in template set Warning: unaligning (T0547)G512 (1txkA)Y206 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VEKENYFL 1txkA 198 :PTDKRLTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=104677 # 1sdeA.504.311 read from T0547.t06.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)E507 (1sdeA)G315 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1sdeA)T320 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VEK 1sdeA 312 :SKD T0547 508 :NYFL 1sdeA 316 :KRSV Number of specific fragments extracted= 2 number of extra gaps= 2 total=104679 # 2b5gA.504.64 read from T0547.t06.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)E507 (2b5gA)G68 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (2b5gA)G73 because Y (epsilon') conformation "forbidden" or filtered. T0547 504 :VEK 2b5gA 65 :TPE T0547 508 :NYFL 2b5gA 69 :HSIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=104681 # 1n12A.504.99 read from T0547.t06.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)V504 (1n12A)G111 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1n12A)S119 because E (beta_S) conformation "forbidden" or filtered. T0547 505 :EKENYFL 1n12A 112 :NNADKTI Number of specific fragments extracted= 1 number of extra gaps= 2 total=104682 # 1d02A.504.141 read from T0547.t06.many.frag # found chain 1d02A in training set T0547 504 :VEKENYFLG 1d02A 142 :DEEILPFWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104683 # 1uv4A.504.138 read from T0547.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)E507 (1uv4A)G142 because T (delta_L) conformation "forbidden" or filtered. T0547 504 :VEK 1uv4A 139 :DKD T0547 508 :NYFLG 1uv4A 143 :NPWLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=104685 # 1tzlA.504.438 read from T0547.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)G512 (1tzlA)Q448 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VEKENYFL 1tzlA 440 :QPSHPWHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=104686 # 1t4bA.504.233 read from T0547.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0547)E507 (1t4bA)G237 because T (delta_L) conformation "forbidden" or filtered. T0547 504 :VEK 1t4bA 234 :LDN T0547 508 :NYFLG 1t4bA 238 :QSREE Number of specific fragments extracted= 2 number of extra gaps= 1 total=104688 # 1gycA.504.190 read from T0547.t06.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)K506 (1gycA)G193 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1gycA)R199 because D (zeta) conformation "forbidden" or filtered. T0547 504 :VE 1gycA 191 :QH T0547 507 :ENYFL 1gycA 194 :KRYRF Number of specific fragments extracted= 2 number of extra gaps= 2 total=104690 # 1guiA.504.124 read from T0547.t06.many.frag # found chain 1guiA in template set Warning: unaligning (T0547)G512 (1guiA)I135 because P (beta_P) conformation "forbidden" or filtered. T0547 504 :VEKENYFL 1guiA 127 :DDADEVVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=104691 # 1ln1A.504.124 read from T0547.t06.many.frag # found chain 1ln1A in template set Warning: unaligning (T0547)K506 (1ln1A)G127 because T (delta_L) conformation "forbidden" or filtered. T0547 504 :VE 1ln1A 125 :ME T0547 507 :ENYFLG 1ln1A 128 :RKIHVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=104693 # 1sacA.504.53 read from T0547.t06.many.frag # found chain 1sacA in template set Warning: unaligning (T0547)G512 (1sacA)L62 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VEKENYFL 1sacA 54 :TQGRDNEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=104694 # 1suuA.504.248 read from T0547.t06.many.frag # found chain 1suuA in training set Warning: unaligning (T0547)N508 (1suuA)G751 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1suuA)D755 because Y (epsilon') conformation "forbidden" or filtered. T0547 504 :VEKE 1suuA 747 :DKKA T0547 509 :YFL 1suuA 752 :SVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=104696 # 2atfA.504.145 read from T0547.t06.many.frag # found chain 2atfA in template set Warning: unaligning (T0547)G512 (2atfA)L154 because E (beta_S) conformation "forbidden" or filtered. T0547 504 :VEKENYFL 2atfA 146 :SHTEPAVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=104697 # 1w96A.505.468 read from T0547.t06.many.frag # found chain 1w96A in training set T0547 505 :EKENYFLGF 1w96A 481 :RSSSNVWGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=104698 # 2a6zA.505.188 read from T0547.t06.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)K506 (2a6zA)S195 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (2a6zA)G196 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2a6zA)S197 because P (beta_P) conformation "forbidden" or filtered. T0547 505 :E 2a6zA 194 :P T0547 509 :YFLGF 2a6zA 198 :YRIGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=104700 # 1v04A.505.122 read from T0547.t06.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)E507 (1v04A)N125 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1v04A)L130 because E (beta_S) conformation "forbidden" or filtered. T0547 505 :EK 1v04A 123 :DD T0547 508 :NYFL 1v04A 126 :TVYL T0547 513 :F 1v04A 131 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=104703 # 1tyjA.505.81 read from T0547.t06.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)E507 (1tyjA)G85 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L511 (1tyjA)F89 because Y (epsilon') conformation "forbidden" or filtered. T0547 505 :EK 1tyjA 83 :SQ T0547 508 :NYF 1tyjA 86 :VLN T0547 512 :GF 1tyjA 90 :GR Number of specific fragments extracted= 3 number of extra gaps= 2 total=104706 # 1thqA.505.97 read from T0547.t06.many.frag # found chain 1thqA in template set T0547 505 :EKENYFLGF 1thqA 97 :ADENFHLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104707 # 1yymG.505.135 read from T0547.t06.many.frag # found chain 1yymG in template set T0547 505 :EKENYFLGF 1yymG 278 :TNNAKTIIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104708 # 1tg7A.505.749 read from T0547.t06.many.frag # found chain 1tg7A in template set T0547 505 :EKENYFLGF 1tg7A 790 :SGKNYVITV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104709 # 1k8wA.505.298 read from T0547.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0547)N508 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. T0547 505 :EKE 1k8wA 286 :GEN T0547 509 :YFLGF 1k8wA 290 :KFIGM Number of specific fragments extracted= 2 number of extra gaps= 1 total=104711 # 1qz8A.505.35 read from T0547.t06.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)E505 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1qz8A)K36 Warning: unaligning (T0547)G512 (1qz8A)A43 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :KENYFL 1qz8A 37 :GGRFVL T0547 513 :F 1qz8A 44 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=104713 # 1t7lA.505.689 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)G512 (1t7lA)G665 because N (gamma') conformation "forbidden" or filtered. T0547 505 :EKENYFL 1t7lA 658 :KGWIKQI T0547 513 :F 1t7lA 666 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=104715 # 1sdeA.505.312 read from T0547.t06.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)E507 (1sdeA)G315 because T (delta_L) conformation "forbidden" or filtered. T0547 505 :EK 1sdeA 313 :KD T0547 508 :NYFLGF 1sdeA 316 :KRSVTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=104717 # 2bpa2.505.135 read from T0547.t06.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0547)N508 (2bpa2)N139 because E (beta_S) conformation "forbidden" or filtered. T0547 505 :EKE 2bpa2 136 :PGN T0547 509 :YFLGF 2bpa2 140 :VYVGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=104719 # 2b5gA.505.65 read from T0547.t06.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)K506 (2b5gA)E67 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (2b5gA)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 505 :E 2b5gA 66 :P T0547 508 :NYFLGF 2b5gA 69 :HSIVGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=104721 # 1uv4A.505.139 read from T0547.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0547)E507 (1uv4A)G142 because T (delta_L) conformation "forbidden" or filtered. T0547 505 :EK 1uv4A 140 :KD T0547 508 :NYFLGF 1uv4A 143 :NPWLAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=104723 # 1kcmA.505.184 read from T0547.t06.many.frag # found chain 1kcmA in template set T0547 505 :EKENYFLGF 1kcmA 186 :KDCPYMCAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=104724 # 1dmhA.505.185 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E507 (1dmhA)G188 because L (left) conformation "forbidden" or filtered. T0547 505 :EK 1dmhA 186 :EN T0547 508 :NYFLGF 1dmhA 189 :QYRVRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=104726 # 1txkA.505.177 read from T0547.t06.many.frag # found chain 1txkA in template set T0547 505 :EKENYFLGF 1txkA 199 :TDKRLTIYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=104727 # 1kv7A.505.462 read from T0547.t06.many.frag # found chain 1kv7A in training set T0547 505 :EKENYFLGF 1kv7A 491 :PKEHAYMAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=104728 # 1h7sA.505.282 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)K506 (1h7sA)S284 because Y (epsilon') conformation "forbidden" or filtered. T0547 505 :E 1h7sA 283 :S T0547 507 :ENYFLGF 1h7sA 285 :TDRQFFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=104730 # 1sacA.505.54 read from T0547.t06.many.frag # found chain 1sacA in template set Warning: unaligning (T0547)Y509 (1sacA)N59 because L (left) conformation "forbidden" or filtered. T0547 505 :EKEN 1sacA 55 :QGRD T0547 510 :FLGF 1sacA 60 :ELLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=104732 # 2atfA.505.146 read from T0547.t06.many.frag # found chain 2atfA in template set T0547 505 :EKENYFLGF 2atfA 147 :HTEPAVSLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=104733 # 1y7mA.505.51 read from T0547.t06.many.frag # found chain 1y7mA in template set Warning: unaligning (T0547)N508 (1y7mA)P55 because G (3-10) conformation "forbidden" or filtered. T0547 505 :EKE 1y7mA 52 :YTI T0547 509 :YFLGF 1y7mA 56 :YHIAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=104735 # 1d02A.505.142 read from T0547.t06.many.frag # found chain 1d02A in training set T0547 505 :EKENYFLGF 1d02A 143 :EEILPFWVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104736 # 1s3eA.505.334 read from T0547.t06.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)E505 (1s3eA)G335 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1s3eA)G342 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :KENYFL 1s3eA 336 :NYAAIM T0547 513 :F 1s3eA 343 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=104738 # 1gycA.505.191 read from T0547.t06.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)E505 (1gycA)H192 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1gycA)G193 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1gycA)R199 because D (zeta) conformation "forbidden" or filtered. T0547 507 :ENYFL 1gycA 194 :KRYRF T0547 513 :F 1gycA 200 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=104740 # 1guiA.505.125 read from T0547.t06.many.frag # found chain 1guiA in template set Warning: unaligning (T0547)K506 (1guiA)A129 because P (beta_P) conformation "forbidden" or filtered. T0547 505 :E 1guiA 128 :D T0547 507 :ENYFLGF 1guiA 130 :DEVVQIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=104742 # 1u20A.505.115 read from T0547.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)E505 (1u20A)H116 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)K506 (1u20A)P117 because L (left) conformation "forbidden" or filtered. T0547 507 :ENYFLGF 1u20A 118 :QKCVTHF Number of specific fragments extracted= 1 number of extra gaps= 1 total=104743 # 1hp1A.505.452 read from T0547.t06.many.frag # found chain 1hp1A in training set T0547 505 :EKENYFLGF 1hp1A 487 :PAKTYRMAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=104744 # 1tzlA.505.439 read from T0547.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0547)E507 (1tzlA)H443 because D (zeta) conformation "forbidden" or filtered. T0547 505 :EK 1tzlA 441 :PS T0547 508 :NYFLGF 1tzlA 444 :PWHTQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=104746 # 1wdaA.505.489 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)E505 (1wdaA)D483 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1wdaA)G486 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1wdaA)L490 because P (beta_P) conformation "forbidden" or filtered. T0547 506 :KE 1wdaA 484 :RK T0547 509 :YFL 1wdaA 487 :FRL T0547 513 :F 1wdaA 491 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=104749 # 1w96A.506.469 read from T0547.t06.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)F513 (1w96A)Y489 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :KENYFLG 1w96A 482 :SSSNVWG T0547 514 :F 1w96A 490 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=104751 # 1t7lA.506.690 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)K506 (1t7lA)G659 because T (delta_L) conformation "forbidden" or filtered. T0547 507 :ENYFLGFF 1t7lA 660 :WIKQIGVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=104752 # 1tyjA.506.82 read from T0547.t06.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)E507 (1tyjA)G85 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L511 (1tyjA)F89 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :K 1tyjA 84 :Q T0547 508 :NYF 1tyjA 86 :VLN T0547 512 :GFF 1tyjA 90 :GRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=104755 # 2b5gA.506.66 read from T0547.t06.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)E507 (2b5gA)G68 because T (delta_L) conformation "forbidden" or filtered. T0547 506 :K 2b5gA 67 :E T0547 508 :NYFLGFF 2b5gA 69 :HSIVGFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=104757 # 2a6zA.506.189 read from T0547.t06.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)K506 (2a6zA)S195 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (2a6zA)G196 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYFLGFF 2a6zA 197 :SYRIGVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=104758 # 1tg7A.506.750 read from T0547.t06.many.frag # found chain 1tg7A in template set T0547 506 :KENYFLGFF 1tg7A 791 :GKNYVITVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104759 # 1qz8A.506.36 read from T0547.t06.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)G512 (1qz8A)A43 because Y (epsilon') conformation "forbidden" or filtered. T0547 506 :KENYFL 1qz8A 37 :GGRFVL T0547 513 :FF 1qz8A 44 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=104761 # 1yymG.506.136 read from T0547.t06.many.frag # found chain 1yymG in template set Warning: unaligning (T0547)G512 (1yymG)I285 because P (beta_P) conformation "forbidden" or filtered. T0547 506 :KENYFL 1yymG 279 :NNAKTI T0547 513 :FF 1yymG 286 :VQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=104763 # 1v04A.506.123 read from T0547.t06.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)E507 (1v04A)N125 because T (delta_L) conformation "forbidden" or filtered. T0547 506 :K 1v04A 124 :D T0547 508 :NYFLGFF 1v04A 126 :TVYLLVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=104765 # 1k8wA.506.299 read from T0547.t06.many.frag # found chain 1k8wA in template set T0547 506 :KENYFLGFF 1k8wA 287 :ENGKFIGMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=104766 # 1thqA.506.98 read from T0547.t06.many.frag # found chain 1thqA in template set T0547 506 :KENYFLGFF 1thqA 98 :DENFHLGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=104767 # 2bpa2.506.136 read from T0547.t06.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0547)E507 (2bpa2)N138 because P (beta_P) conformation "forbidden" or filtered. T0547 506 :K 2bpa2 137 :G T0547 508 :NYFLGFF 2bpa2 139 :NVYVGFM Number of specific fragments extracted= 2 number of extra gaps= 1 total=104769 # 1kv7A.506.463 read from T0547.t06.many.frag # found chain 1kv7A in training set T0547 506 :KENYFLGFF 1kv7A 492 :KEHAYMAHC Number of specific fragments extracted= 1 number of extra gaps= 0 total=104770 # 1yavA.506.122 read from T0547.t06.many.frag # found chain 1yavA in template set Warning: unaligning (T0547)N508 (1yavA)Q125 because L (left) conformation "forbidden" or filtered. T0547 506 :KE 1yavA 123 :DE T0547 509 :YFLGFF 1yavA 126 :VFEGIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=104772 # 1sdeA.506.313 read from T0547.t06.many.frag # found chain 1sdeA in template set Warning: unaligning (T0547)K506 (1sdeA)D314 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1sdeA)T320 because E (beta_S) conformation "forbidden" or filtered. T0547 507 :ENYFL 1sdeA 315 :GKRSV T0547 513 :FF 1sdeA 321 :AL Number of specific fragments extracted= 2 number of extra gaps= 2 total=104774 # 1s3eA.506.334 read from T0547.t06.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)N508 (1s3eA)Y337 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1s3eA)M341 because P (beta_P) conformation "forbidden" or filtered. T0547 506 :KE 1s3eA 335 :GN T0547 509 :YFL 1s3eA 338 :AAI T0547 513 :FF 1s3eA 342 :GF Number of specific fragments extracted= 3 number of extra gaps= 2 total=104777 # 1kcmA.506.185 read from T0547.t06.many.frag # found chain 1kcmA in template set Warning: unaligning (T0547)N508 (1kcmA)P189 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1kcmA)A193 because P (beta_P) conformation "forbidden" or filtered. T0547 506 :KE 1kcmA 187 :DC T0547 509 :YFL 1kcmA 190 :YMC T0547 513 :FF 1kcmA 194 :YK Number of specific fragments extracted= 3 number of extra gaps= 2 total=104780 # 1h7sA.506.283 read from T0547.t06.many.frag # found chain 1h7sA in template set T0547 506 :KENYFLGFF 1h7sA 284 :STDRQFFFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=104781 # 1guiA.506.126 read from T0547.t06.many.frag # found chain 1guiA in template set Warning: unaligning (T0547)E507 (1guiA)D130 because P (beta_P) conformation "forbidden" or filtered. T0547 506 :K 1guiA 129 :A T0547 508 :NYFLGFF 1guiA 131 :EVVQISF Number of specific fragments extracted= 2 number of extra gaps= 1 total=104783 # 1pot.506.196 read from T0547.t06.many.frag # found chain 1pot in training set Warning: unaligning (T0547)E507 (1pot)G221 because L (left) conformation "forbidden" or filtered. T0547 506 :K 1pot 220 :E T0547 508 :NYFLGFF 1pot 222 :EVNLGMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=104785 # 1d02A.506.143 read from T0547.t06.many.frag # found chain 1d02A in training set Warning: unaligning (T0547)E507 (1d02A)I145 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1d02A)L146 because P (beta_P) conformation "forbidden" or filtered. T0547 506 :K 1d02A 144 :E T0547 509 :YFLGFF 1d02A 147 :PFWVVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=104787 # 1txkA.506.178 read from T0547.t06.many.frag # found chain 1txkA in template set T0547 506 :KENYFLGFF 1txkA 200 :DKRLTIYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104788 # 1wdaA.506.490 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)K506 (1wdaA)R484 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E507 (1wdaA)K485 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (1wdaA)G486 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y509 (1wdaA)F487 because Y (epsilon') conformation "forbidden" or filtered. T0547 510 :FLGFF 1wdaA 488 :RLLLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=104789 # 2fbeA.506.124 read from T0547.t06.many.frag # found chain 2fbeA in template set Warning: unaligning (T0547)N508 (2fbeA)L127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (2fbeA)G131 because P (beta_P) conformation "forbidden" or filtered. T0547 506 :KE 2fbeA 125 :PQ T0547 509 :YFL 2fbeA 128 :HRV T0547 513 :FF 2fbeA 132 :IF Number of specific fragments extracted= 3 number of extra gaps= 2 total=104792 2aenA expands to /projects/compbio/data/pdb/2aen.pdb.gz 2aenA:Skipped atom 21, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 23, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 25, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 27, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 159, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 161, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 163, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 209, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 211, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 219, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 221, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 223, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 225, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 227, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 229, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 231, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 233, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 235, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 237, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 239, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 399, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 434, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 436, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 438, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 440, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 442, because occupancy 0.500 <= existing 0.500 in 2aenA # 2aenA.506.38 read from T0547.t06.many.frag # adding 2aenA to template set # found chain 2aenA in template set Warning: unaligning (T0547)K506 (2aenA)N98 because L (left) conformation "forbidden" or filtered. T0547 507 :ENYFLGFF 2aenA 99 :NDFWTAVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=104793 # 1dmhA.506.186 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E507 (1dmhA)G188 because L (left) conformation "forbidden" or filtered. T0547 506 :K 1dmhA 187 :N T0547 508 :NYFLGFF 1dmhA 189 :QYRVRTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=104795 # 1hp1A.506.453 read from T0547.t06.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)G512 (1hp1A)A494 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :KENYFL 1hp1A 488 :AKTYRM T0547 513 :FF 1hp1A 495 :TL Number of specific fragments extracted= 2 number of extra gaps= 1 total=104797 # 2akaA.506.455 read from T0547.t06.many.frag # found chain 2akaA in template set T0547 506 :KENYFLGFF 2akaA 445 :RKAYFIGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104798 # 1c5eA.506.38 read from T0547.t06.many.frag # found chain 1c5eA in training set Warning: unaligning (T0547)N508 (1c5eA)G55 because T (delta_L) conformation "forbidden" or filtered. T0547 506 :KE 1c5eA 53 :TD T0547 509 :YFLGFF 1c5eA 56 :AAVGIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=104800 # 1sacA.506.55 read from T0547.t06.many.frag # found chain 1sacA in template set Warning: unaligning (T0547)E507 (1sacA)R57 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1sacA)L62 because E (beta_S) conformation "forbidden" or filtered. T0547 506 :K 1sacA 56 :G T0547 508 :NYFL 1sacA 58 :DNEL T0547 513 :FF 1sacA 63 :VY Number of specific fragments extracted= 3 number of extra gaps= 2 total=104803 # 1tyjA.507.83 read from T0547.t06.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)L511 (1tyjA)F89 because Y (epsilon') conformation "forbidden" or filtered. T0547 507 :ENYF 1tyjA 85 :GVLN T0547 512 :GFFL 1tyjA 90 :GRLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=104805 # 1w96A.507.470 read from T0547.t06.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)Y509 (1w96A)N485 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F513 (1w96A)Y489 because Y (epsilon') conformation "forbidden" or filtered. T0547 507 :EN 1w96A 483 :SS T0547 510 :FLG 1w96A 486 :VWG T0547 514 :FL 1w96A 490 :FS Number of specific fragments extracted= 3 number of extra gaps= 2 total=104808 # 2b5gA.507.67 read from T0547.t06.many.frag # found chain 2b5gA in training set T0547 507 :ENYFLGFFL 2b5gA 68 :GHSIVGFAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=104809 # 1t7lA.507.691 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)E507 (1t7lA)W660 because P (beta_P) conformation "forbidden" or filtered. T0547 508 :NYFLGFFL 1t7lA 661 :IKQIGVGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=104810 # 1tg7A.507.751 read from T0547.t06.many.frag # found chain 1tg7A in template set T0547 507 :ENYFLGFFL 1tg7A 792 :KNYVITVVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=104811 # 2a6zA.507.190 read from T0547.t06.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)E507 (2a6zA)G196 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N508 (2a6zA)S197 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (2a6zA)A204 because Y (epsilon') conformation "forbidden" or filtered. T0547 509 :YFLGFF 2a6zA 198 :YRIGVT Number of specific fragments extracted= 1 number of extra gaps= 2 total=104812 # 1qz8A.507.37 read from T0547.t06.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)E507 (1qz8A)G38 because S (epsilon) conformation "forbidden" or filtered. T0547 508 :NYFLGFFL 1qz8A 39 :RFVLALLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=104813 # 1pot.507.197 read from T0547.t06.many.frag # found chain 1pot in training set Warning: unaligning (T0547)E507 (1pot)G221 because L (left) conformation "forbidden" or filtered. T0547 508 :NYFLGFFL 1pot 222 :EVNLGMIW Number of specific fragments extracted= 1 number of extra gaps= 1 total=104814 # 2bpa2.507.137 read from T0547.t06.many.frag # found chain 2bpa2 in template set T0547 507 :ENYFLGFFL 2bpa2 138 :NNVYVGFMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104815 # 1yavA.507.123 read from T0547.t06.many.frag # found chain 1yavA in template set Warning: unaligning (T0547)N508 (1yavA)Q125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1yavA)G129 because Y (epsilon') conformation "forbidden" or filtered. T0547 507 :E 1yavA 124 :E T0547 509 :YFL 1yavA 126 :VFE T0547 513 :FFL 1yavA 130 :IFT Number of specific fragments extracted= 3 number of extra gaps= 2 total=104818 # 1v04A.507.124 read from T0547.t06.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)E507 (1v04A)N125 because T (delta_L) conformation "forbidden" or filtered. T0547 508 :NYFLGFFL 1v04A 126 :TVYLLVVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=104819 # 1k8wA.507.300 read from T0547.t06.many.frag # found chain 1k8wA in template set T0547 507 :ENYFLGFFL 1k8wA 288 :NGKFIGMGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=104820 # 1oruA.507.64 read from T0547.t06.many.frag # found chain 1oruA in training set T0547 507 :ENYFLGFFL 1oruA 62 :NRRQISIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=104821 # 1yymG.507.137 read from T0547.t06.many.frag # found chain 1yymG in template set Warning: unaligning (T0547)G512 (1yymG)I285 because P (beta_P) conformation "forbidden" or filtered. T0547 507 :ENYFL 1yymG 280 :NAKTI T0547 513 :FFL 1yymG 286 :VQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=104823 # 1txkA.507.179 read from T0547.t06.many.frag # found chain 1txkA in template set T0547 507 :ENYFLGFFL 1txkA 201 :KRLTIYALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104824 # 2akaA.507.456 read from T0547.t06.many.frag # found chain 2akaA in template set T0547 507 :ENYFLGFFL 2akaA 446 :KAYFIGVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=104825 # 1p3dA.507.365 read from T0547.t06.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)N508 (1p3dA)K367 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1p3dA)M371 because E (beta_S) conformation "forbidden" or filtered. T0547 507 :E 1p3dA 366 :D T0547 509 :YFL 1p3dA 368 :RIV T0547 513 :FFL 1p3dA 372 :IFQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=104828 # 1kv7A.507.464 read from T0547.t06.many.frag # found chain 1kv7A in training set T0547 507 :ENYFLGFFL 1kv7A 493 :EHAYMAHCH Number of specific fragments extracted= 1 number of extra gaps= 0 total=104829 # 1gycA.507.193 read from T0547.t06.many.frag # found chain 1gycA in template set T0547 507 :ENYFLGFFL 1gycA 194 :KRYRFRLVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=104830 # 1wdaA.507.491 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G512 (1wdaA)L490 because P (beta_P) conformation "forbidden" or filtered. T0547 507 :ENYFL 1wdaA 485 :KGFRL T0547 513 :FFL 1wdaA 491 :LAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=104832 # 1guiA.507.127 read from T0547.t06.many.frag # found chain 1guiA in template set T0547 507 :ENYFLGFFL 1guiA 130 :DEVVQISFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=104833 # 2amdA.507.201 read from T0547.t06.many.frag # found chain 2amdA in template set T0547 507 :ENYFLGFFL 2amdA 197 :DTTITLNVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104834 # 2fbeA.507.125 read from T0547.t06.many.frag # found chain 2fbeA in template set Warning: unaligning (T0547)N508 (2fbeA)L127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F514 (2fbeA)F133 because D (zeta) conformation "forbidden" or filtered. T0547 507 :E 2fbeA 126 :Q T0547 509 :YFLGF 2fbeA 128 :HRVGI T0547 515 :L 2fbeA 134 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=104837 # 1hp1A.507.454 read from T0547.t06.many.frag # found chain 1hp1A in training set Warning: unaligning (T0547)N508 (1hp1A)T490 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1hp1A)A494 because E (beta_S) conformation "forbidden" or filtered. T0547 507 :E 1hp1A 489 :K T0547 509 :YFL 1hp1A 491 :YRM T0547 513 :FFL 1hp1A 495 :TLN Number of specific fragments extracted= 3 number of extra gaps= 2 total=104840 # 1kcmA.507.186 read from T0547.t06.many.frag # found chain 1kcmA in template set Warning: unaligning (T0547)N508 (1kcmA)P189 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1kcmA)A193 because P (beta_P) conformation "forbidden" or filtered. T0547 507 :E 1kcmA 188 :C T0547 509 :YFL 1kcmA 190 :YMC T0547 513 :FFL 1kcmA 194 :YKL Number of specific fragments extracted= 3 number of extra gaps= 2 total=104843 # 1u20A.507.117 read from T0547.t06.many.frag # found chain 1u20A in template set T0547 507 :ENYFLGFFL 1u20A 118 :QKCVTHFYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=104844 # 2aenA.507.39 read from T0547.t06.many.frag # found chain 2aenA in template set Warning: unaligning (T0547)G512 (2aenA)A104 because E (beta_S) conformation "forbidden" or filtered. T0547 507 :ENYFL 2aenA 99 :NDFWT T0547 513 :FFL 2aenA 105 :VIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=104846 # 1d02A.507.144 read from T0547.t06.many.frag # found chain 1d02A in training set T0547 507 :ENYFLGFFL 1d02A 145 :ILPFWVVFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=104847 # 1thqA.507.99 read from T0547.t06.many.frag # found chain 1thqA in template set Warning: unaligning (T0547)L515 (1thqA)F107 because Y (epsilon') conformation "forbidden" or filtered. T0547 507 :ENYFLGFF 1thqA 99 :ENFHLGLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=104848 # 1h7sA.507.284 read from T0547.t06.many.frag # found chain 1h7sA in template set Warning: unaligning (T0547)L515 (1h7sA)N293 because L (left) conformation "forbidden" or filtered. T0547 507 :ENYFLGFF 1h7sA 285 :TDRQFFFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=104849 # 1tyjA.508.84 read from T0547.t06.many.frag # found chain 1tyjA in template set T0547 508 :NYFLGFFLV 1tyjA 86 :VLNFGRLYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=104850 # 1w96A.508.471 read from T0547.t06.many.frag # found chain 1w96A in training set T0547 508 :NYFLGFFLV 1w96A 484 :SNVWGYFSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104851 # 1t7lA.508.692 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)G512 (1t7lA)G665 because N (gamma') conformation "forbidden" or filtered. T0547 508 :NYFL 1t7lA 661 :IKQI T0547 513 :FFLV 1t7lA 666 :VGVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=104853 # 1tg7A.508.752 read from T0547.t06.many.frag # found chain 1tg7A in template set T0547 508 :NYFLGFFLV 1tg7A 793 :NYVITVVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=104854 # 1oruA.508.65 read from T0547.t06.many.frag # found chain 1oruA in training set Warning: unaligning (T0547)G512 (1oruA)S67 because E (beta_S) conformation "forbidden" or filtered. T0547 508 :NYFL 1oruA 63 :RRQI T0547 513 :FFLV 1oruA 68 :IVSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=104856 # 1pot.508.198 read from T0547.t06.many.frag # found chain 1pot in training set T0547 508 :NYFLGFFLV 1pot 222 :EVNLGMIWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104857 # 1qz8A.508.38 read from T0547.t06.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)G512 (1qz8A)A43 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYFL 1qz8A 39 :RFVL T0547 513 :FFLV 1qz8A 44 :LLSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=104859 # 2a6zA.508.191 read from T0547.t06.many.frag # found chain 2a6zA in training set T0547 508 :NYFLGFFLV 2a6zA 197 :SYRIGVTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=104860 # 2b5gA.508.68 read from T0547.t06.many.frag # found chain 2b5gA in training set T0547 508 :NYFLGFFLV 2b5gA 69 :HSIVGFAMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=104861 # 2bpa2.508.138 read from T0547.t06.many.frag # found chain 2bpa2 in template set T0547 508 :NYFLGFFLV 2bpa2 139 :NVYVGFMVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=104862 # 1gycA.508.194 read from T0547.t06.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)G512 (1gycA)R199 because D (zeta) conformation "forbidden" or filtered. T0547 508 :NYFL 1gycA 195 :RYRF T0547 513 :FFLV 1gycA 200 :LVSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=104864 # 2amdA.508.202 read from T0547.t06.many.frag # found chain 2amdA in template set T0547 508 :NYFLGFFLV 2amdA 198 :TTITLNVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=104865 # 1wdaA.508.492 read from T0547.t06.many.frag # found chain 1wdaA in template set T0547 508 :NYFLGFFLV 1wdaA 486 :GFRLLLASP Number of specific fragments extracted= 1 number of extra gaps= 0 total=104866 # 1v04A.508.125 read from T0547.t06.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)N508 (1v04A)T126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1v04A)L130 because E (beta_S) conformation "forbidden" or filtered. T0547 509 :YFL 1v04A 127 :VYL T0547 513 :FFLV 1v04A 131 :VVNH Number of specific fragments extracted= 2 number of extra gaps= 2 total=104868 # 1guiA.508.128 read from T0547.t06.many.frag # found chain 1guiA in template set T0547 508 :NYFLGFFLV 1guiA 131 :EVVQISFEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104869 # 1hp1A.508.455 read from T0547.t06.many.frag # found chain 1hp1A in training set T0547 508 :NYFLGFFLV 1hp1A 490 :TYRMATLNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=104870 # 1zpsA.508.35 read from T0547.t06.many.frag # found chain 1zpsA in training set Warning: unaligning (T0547)G512 (1zpsA)A40 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :NYFL 1zpsA 36 :VLMV T0547 513 :FFLV 1zpsA 41 :YMNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=104872 # 1yavA.508.124 read from T0547.t06.many.frag # found chain 1yavA in template set T0547 508 :NYFLGFFLV 1yavA 125 :QVFEGIFTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=104873 # 2bjqA.508.306 read from T0547.t06.many.frag # found chain 2bjqA in training set T0547 508 :NYFLGFFLV 2bjqA 307 :TERLGNLHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=104874 # 1usyA.508.123 read from T0547.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)G512 (1usyA)E128 because P (beta_P) conformation "forbidden" or filtered. T0547 508 :NYFL 1usyA 124 :PVIV T0547 513 :FFLV 1usyA 129 :IGHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=104876 # 1kv7A.508.465 read from T0547.t06.many.frag # found chain 1kv7A in training set T0547 508 :NYFLGFFLV 1kv7A 494 :HAYMAHCHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104877 # 1xg4A.508.227 read from T0547.t06.many.frag # found chain 1xg4A in training set T0547 508 :NYFLGFFLV 1xg4A 229 :HVAMALYPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104878 # 1rz2A.508.224 read from T0547.t06.many.frag # found chain 1rz2A in training set T0547 508 :NYFLGFFLV 1rz2A 225 :DQIVTLSTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=104879 # 2fbeA.508.126 read from T0547.t06.many.frag # found chain 2fbeA in template set T0547 508 :NYFLGFFLV 2fbeA 127 :LHRVGIFLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=104880 # 1p3dA.508.366 read from T0547.t06.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)G512 (1p3dA)M371 because E (beta_S) conformation "forbidden" or filtered. T0547 508 :NYFL 1p3dA 367 :KRIV T0547 513 :FFLV 1p3dA 372 :IFQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=104882 # 2akaA.508.457 read from T0547.t06.many.frag # found chain 2akaA in template set Warning: unaligning (T0547)Y509 (2akaA)Y448 because Y (epsilon') conformation "forbidden" or filtered. T0547 508 :N 2akaA 447 :A T0547 510 :FLGFFLV 2akaA 449 :FIGVLDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=104884 # 1kcmA.508.187 read from T0547.t06.many.frag # found chain 1kcmA in template set Warning: unaligning (T0547)N508 (1kcmA)P189 because P (beta_P) conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 1kcmA 190 :YMCAYKLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=104885 # 1txkA.508.180 read from T0547.t06.many.frag # found chain 1txkA in template set Warning: unaligning (T0547)G512 (1txkA)Y206 because E (beta_S) conformation "forbidden" or filtered. T0547 508 :NYFL 1txkA 202 :RLTI T0547 513 :FFLV 1txkA 207 :ALLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=104887 # 2erfA.508.89 read from T0547.t06.many.frag # found chain 2erfA in training set Warning: unaligning (T0547)N508 (2erfA)G96 because S (epsilon) conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 2erfA 97 :QVFSVVSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=104888 # 1k8wA.508.301 read from T0547.t06.many.frag # found chain 1k8wA in template set T0547 508 :NYFLGFFLV 1k8wA 289 :GKFIGMGEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=104889 # 1tyjA.509.85 read from T0547.t06.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)L511 (1tyjA)F89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1tyjA)G90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1tyjA)N95 because N (gamma') conformation "forbidden" or filtered. T0547 509 :YF 1tyjA 87 :LN T0547 513 :FFLV 1tyjA 91 :RLYM Number of specific fragments extracted= 2 number of extra gaps= 2 total=104891 # 1w96A.509.472 read from T0547.t06.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)G512 (1w96A)G488 because Y (epsilon') conformation "forbidden" or filtered. T0547 509 :YFL 1w96A 485 :NVW T0547 513 :FFLVG 1w96A 489 :YFSVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=104893 # 1oruA.509.66 read from T0547.t06.many.frag # found chain 1oruA in training set T0547 509 :YFLGFFLVG 1oruA 64 :RQISIVSIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=104894 # 1pot.509.199 read from T0547.t06.many.frag # found chain 1pot in training set T0547 509 :YFLGFFLVG 1pot 223 :VNLGMIWNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=104895 # 1tg7A.509.753 read from T0547.t06.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)G517 (1tg7A)N802 because E (beta_S) conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 1tg7A 794 :YVITVVID Number of specific fragments extracted= 1 number of extra gaps= 1 total=104896 # 1t7lA.509.693 read from T0547.t06.many.frag # found chain 1t7lA in template set T0547 509 :YFLGFFLVG 1t7lA 662 :KQIGVGVWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=104897 # 1yavA.509.125 read from T0547.t06.many.frag # found chain 1yavA in template set T0547 509 :YFLGFFLVG 1yavA 126 :VFEGIFTRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=104898 # 1zpsA.509.36 read from T0547.t06.many.frag # found chain 1zpsA in training set T0547 509 :YFLGFFLVG 1zpsA 37 :LMVAYMNRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=104899 # 1qz8A.509.39 read from T0547.t06.many.frag # found chain 1qz8A in template set T0547 509 :YFLGFFLVG 1qz8A 40 :FVLALLSDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=104900 # 1hp1A.509.456 read from T0547.t06.many.frag # found chain 1hp1A in training set T0547 509 :YFLGFFLVG 1hp1A 491 :YRMATLNFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104901 # 2a6zA.509.192 read from T0547.t06.many.frag # found chain 2a6zA in training set T0547 509 :YFLGFFLVG 2a6zA 198 :YRIGVTAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104902 # 1gycA.509.195 read from T0547.t06.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)G512 (1gycA)R199 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1gycA)S204 because P (beta_P) conformation "forbidden" or filtered. T0547 509 :YFL 1gycA 196 :YRF T0547 513 :FFLV 1gycA 200 :LVSI Number of specific fragments extracted= 2 number of extra gaps= 2 total=104904 # 2bpa2.509.139 read from T0547.t06.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0547)G512 (2bpa2)G143 because Y (epsilon') conformation "forbidden" or filtered. T0547 509 :YFL 2bpa2 140 :VYV T0547 513 :FFLVG 2bpa2 144 :FMVWS Number of specific fragments extracted= 2 number of extra gaps= 1 total=104906 # 1svsA.509.262 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)G512 (1svsA)F267 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (1svsA)K270 because L (left) conformation "forbidden" or filtered. T0547 509 :YFL 1svsA 264 :IIL T0547 513 :FF 1svsA 268 :LN T0547 516 :VG 1svsA 271 :KD Number of specific fragments extracted= 3 number of extra gaps= 2 total=104909 # 2amdA.509.203 read from T0547.t06.many.frag # found chain 2amdA in template set T0547 509 :YFLGFFLVG 2amdA 199 :TITLNVLAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=104910 # 1usyA.509.124 read from T0547.t06.many.frag # found chain 1usyA in template set T0547 509 :YFLGFFLVG 1usyA 125 :VIVEIGHTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=104911 # 1knyA.509.74 read from T0547.t06.many.frag # found chain 1knyA in template set T0547 509 :YFLGFFLVG 1knyA 75 :VEVNFYSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=104912 # 1wdaA.509.493 read from T0547.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0547)G512 (1wdaA)L490 because P (beta_P) conformation "forbidden" or filtered. T0547 509 :YFL 1wdaA 487 :FRL T0547 513 :FFLVG 1wdaA 491 :LASPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=104914 # 2bjqA.509.307 read from T0547.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0547)G517 (2bjqA)G316 because H (helix) conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 2bjqA 308 :ERLGNLHM Number of specific fragments extracted= 1 number of extra gaps= 1 total=104915 # 1v04A.509.126 read from T0547.t06.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)G517 (1v04A)P135 because P (beta_P) conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 1v04A 127 :VYLLVVNH Number of specific fragments extracted= 1 number of extra gaps= 1 total=104916 # 1xg4A.509.228 read from T0547.t06.many.frag # found chain 1xg4A in training set T0547 509 :YFLGFFLVG 1xg4A 230 :VAMALYPLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=104917 # 2b5gA.509.69 read from T0547.t06.many.frag # found chain 2b5gA in training set Warning: unaligning (T0547)G517 (2b5gA)Y78 because Y (epsilon') conformation "forbidden" or filtered. T0547 509 :YFLGFFLV 2b5gA 70 :SIVGFAMY Number of specific fragments extracted= 1 number of extra gaps= 1 total=104918 # 1rz2A.509.225 read from T0547.t06.many.frag # found chain 1rz2A in training set Warning: unaligning (T0547)G517 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rz2A)A241 T0547 509 :YFLGFFLV 1rz2A 226 :QIVTLSTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=104919 # 2fbeA.509.127 read from T0547.t06.many.frag # found chain 2fbeA in template set T0547 509 :YFLGFFLVG 2fbeA 128 :HRVGIFLDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104920 # 1vlyA.509.127 read from T0547.t06.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)G512 (1vlyA)G119 because E (beta_S) conformation "forbidden" or filtered. T0547 509 :YFL 1vlyA 116 :VLL T0547 513 :FFLVG 1vlyA 120 :VAGFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=104922 # 1kv7A.509.466 read from T0547.t06.many.frag # found chain 1kv7A in training set Warning: unaligning (T0547)G512 (1kv7A)A498 because E (beta_S) conformation "forbidden" or filtered. T0547 509 :YFL 1kv7A 495 :AYM T0547 513 :FFLVG 1kv7A 499 :HCHLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=104924 # 1guiA.509.129 read from T0547.t06.many.frag # found chain 1guiA in template set Warning: unaligning (T0547)F510 (1guiA)V133 because Y (epsilon') conformation "forbidden" or filtered. T0547 509 :Y 1guiA 132 :V T0547 511 :LGFFLVG 1guiA 134 :QISFELG Number of specific fragments extracted= 2 number of extra gaps= 1 total=104926 # 1p3dA.509.367 read from T0547.t06.many.frag # found chain 1p3dA in training set T0547 509 :YFLGFFLVG 1p3dA 368 :RIVMIFQPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=104927 # 1s3eA.509.338 read from T0547.t06.many.frag # found chain 1s3eA in training set T0547 509 :YFLGFFLVG 1s3eA 339 :AIMGFILAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=104928 # 1l1lA.509.467 read from T0547.t06.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)G512 (1l1lA)G471 because D (zeta) conformation "forbidden" or filtered. T0547 509 :YFL 1l1lA 468 :RRI T0547 513 :FFLVG 1l1lA 472 :ISMSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=104930 # 1tyjA.510.86 read from T0547.t06.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)L511 (1tyjA)F89 because Y (epsilon') conformation "forbidden" or filtered. T0547 510 :F 1tyjA 88 :N T0547 512 :GFFLVGA 1tyjA 90 :GRLYMNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=104932 # 1pot.510.200 read from T0547.t06.many.frag # found chain 1pot in training set T0547 510 :FLGFFLVGA 1pot 224 :NLGMIWNGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=104933 # 1oruA.510.67 read from T0547.t06.many.frag # found chain 1oruA in training set T0547 510 :FLGFFLVGA 1oruA 65 :QISIVSIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=104934 # 1w96A.510.473 read from T0547.t06.many.frag # found chain 1w96A in training set T0547 510 :FLGFFLVGA 1w96A 486 :VWGYFSVGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=104935 # 1yavA.510.126 read from T0547.t06.many.frag # found chain 1yavA in template set T0547 510 :FLGFFLVGA 1yavA 127 :FEGIFTRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104936 # 1zpsA.510.37 read from T0547.t06.many.frag # found chain 1zpsA in training set T0547 510 :FLGFFLVGA 1zpsA 38 :MVAYMNREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=104937 # 1svsA.510.263 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)G512 (1svsA)F267 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (1svsA)K270 because L (left) conformation "forbidden" or filtered. T0547 510 :FL 1svsA 265 :IL T0547 513 :FF 1svsA 268 :LN T0547 516 :VGA 1svsA 271 :KDL Number of specific fragments extracted= 3 number of extra gaps= 2 total=104940 # 1t7lA.510.694 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)G517 (1t7lA)D670 because N (gamma') conformation "forbidden" or filtered. T0547 510 :FLGFFLV 1t7lA 663 :QIGVGVW T0547 518 :A 1t7lA 671 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=104942 # 1khxA.510.196 read from T0547.t06.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)G512 (1khxA)E439 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1khxA)G444 because H (helix) conformation "forbidden" or filtered. T0547 510 :FL 1khxA 437 :WI T0547 513 :FFLV 1khxA 440 :LHLN T0547 518 :A 1khxA 445 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=104945 # 1tg7A.510.754 read from T0547.t06.many.frag # found chain 1tg7A in template set T0547 510 :FLGFFLVGA 1tg7A 795 :VITVVIDNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=104946 # 1gycA.510.196 read from T0547.t06.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)G512 (1gycA)R199 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1gycA)S204 because P (beta_P) conformation "forbidden" or filtered. T0547 510 :FL 1gycA 197 :RF T0547 513 :FFLV 1gycA 200 :LVSI T0547 518 :A 1gycA 205 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=104949 # 1xg4A.510.229 read from T0547.t06.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)V516 (1xg4A)L237 because G (3-10) conformation "forbidden" or filtered. T0547 510 :FLGFFL 1xg4A 231 :AMALYP T0547 517 :GA 1xg4A 238 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=104951 # 1usyA.510.125 read from T0547.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)L511 (1usyA)V127 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G512 (1usyA)E128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F514 (1usyA)G130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1usyA)G133 because H (helix) conformation "forbidden" or filtered. T0547 510 :F 1usyA 126 :I T0547 513 :F 1usyA 129 :I T0547 515 :LV 1usyA 131 :HT T0547 518 :A 1usyA 134 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=104955 # 1kv7A.510.467 read from T0547.t06.many.frag # found chain 1kv7A in training set T0547 510 :FLGFFLVGA 1kv7A 496 :YMAHCHLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=104956 # 1s3eA.510.339 read from T0547.t06.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)V516 (1s3eA)A346 because S (epsilon) conformation "forbidden" or filtered. T0547 510 :FLGFFL 1s3eA 340 :IMGFIL T0547 517 :GA 1s3eA 347 :HK Number of specific fragments extracted= 2 number of extra gaps= 1 total=104958 # 1guiA.510.130 read from T0547.t06.many.frag # found chain 1guiA in template set T0547 510 :FLGFFLVGA 1guiA 133 :VQISFELGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=104959 # 1hp1A.510.457 read from T0547.t06.many.frag # found chain 1hp1A in training set T0547 510 :FLGFFLVGA 1hp1A 492 :RMATLNFNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=104960 # 2amdA.510.204 read from T0547.t06.many.frag # found chain 2amdA in template set T0547 510 :FLGFFLVGA 2amdA 200 :ITLNVLAWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104961 # 1knyA.510.75 read from T0547.t06.many.frag # found chain 1knyA in template set Warning: unaligning (T0547)F514 (1knyA)Y80 because Y (epsilon') conformation "forbidden" or filtered. T0547 510 :FLGF 1knyA 76 :EVNF T0547 515 :LVGA 1knyA 81 :SEEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=104963 # 1z6nA.510.86 read from T0547.t06.many.frag # found chain 1z6nA in training set T0547 510 :FLGFFLVGA 1z6nA 87 :ELAIISKGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=104964 # 2c1lA.510.340 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 510 :FLGFFLVGA 2c1lA 341 :RFGYISNEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=104965 # 1qz8A.510.40 read from T0547.t06.many.frag # found chain 1qz8A in template set Warning: unaligning (T0547)G512 (1qz8A)A43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1qz8A)H48 because P (beta_P) conformation "forbidden" or filtered. T0547 510 :FL 1qz8A 41 :VL T0547 513 :FFLV 1qz8A 44 :LLSD T0547 518 :A 1qz8A 49 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=104968 # 1vlyA.510.128 read from T0547.t06.many.frag # found chain 1vlyA in training set Warning: unaligning (T0547)F514 (1vlyA)A121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)L515 (1vlyA)G122 because S (epsilon) conformation "forbidden" or filtered. T0547 510 :FLGF 1vlyA 117 :LLGV T0547 516 :VGA 1vlyA 123 :FQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=104970 # 2fbeA.510.128 read from T0547.t06.many.frag # found chain 2fbeA in template set T0547 510 :FLGFFLVGA 2fbeA 129 :RVGIFLDVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=104971 # 1zkdA.510.293 read from T0547.t06.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)G512 (1zkdA)G296 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F513 (1zkdA)P297 because C (cis) conformation "forbidden" or filtered. T0547 510 :FL 1zkdA 294 :AH T0547 514 :FLVGA 1zkdA 298 :VTQGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=104973 # 1v04A.510.127 read from T0547.t06.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)G512 (1v04A)L130 because E (beta_S) conformation "forbidden" or filtered. T0547 510 :FL 1v04A 128 :YL T0547 513 :FFLVGA 1v04A 131 :VVNHPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=104975 # 1p3dA.510.368 read from T0547.t06.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)G512 (1p3dA)M371 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A518 (1p3dA)R377 because S (epsilon) conformation "forbidden" or filtered. T0547 510 :FL 1p3dA 369 :IV T0547 513 :FFLVG 1p3dA 372 :IFQPH Number of specific fragments extracted= 2 number of extra gaps= 2 total=104977 # 2a6zA.510.193 read from T0547.t06.many.frag # found chain 2a6zA in training set Warning: unaligning (T0547)A518 (2a6zA)G207 because S (epsilon) conformation "forbidden" or filtered. T0547 510 :FLGFFLVG 2a6zA 199 :RIGVTAQN Number of specific fragments extracted= 1 number of extra gaps= 1 total=104978 # 1tl9A.510.160 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 510 :FLGFFLVGA 1tl9A 186 :FWSALLEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=104979 # 1wdaA.510.494 read from T0547.t06.many.frag # found chain 1wdaA in template set T0547 510 :FLGFFLVGA 1wdaA 488 :RLLLASPRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=104980 # 1tyjA.511.87 read from T0547.t06.many.frag # found chain 1tyjA in template set Warning: unaligning (T0547)L511 (1tyjA)F89 because Y (epsilon') conformation "forbidden" or filtered. T0547 512 :GFFLVGAY 1tyjA 90 :GRLYMNLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=104981 # 1khxA.511.197 read from T0547.t06.many.frag # found chain 1khxA in training set Warning: unaligning (T0547)G517 (1khxA)G444 because H (helix) conformation "forbidden" or filtered. T0547 511 :LGFFLV 1khxA 438 :IELHLN T0547 518 :AY 1khxA 445 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=104983 # 1pot.511.201 read from T0547.t06.many.frag # found chain 1pot in training set T0547 511 :LGFFLVGAY 1pot 225 :LGMIWNGSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=104984 # 1svsA.511.264 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)L515 (1svsA)K270 because L (left) conformation "forbidden" or filtered. T0547 511 :LGFF 1svsA 266 :LFLN T0547 516 :VGAY 1svsA 271 :KDLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=104986 # 1oruA.511.68 read from T0547.t06.many.frag # found chain 1oruA in training set T0547 511 :LGFFLVGAY 1oruA 66 :ISIVSIEEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=104987 # 1yavA.511.127 read from T0547.t06.many.frag # found chain 1yavA in template set T0547 511 :LGFFLVGAY 1yavA 128 :EGIFTRRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=104988 # 1w96A.511.474 read from T0547.t06.many.frag # found chain 1w96A in training set Warning: unaligning (T0547)Y519 (1w96A)N495 because L (left) conformation "forbidden" or filtered. T0547 511 :LGFFLVGA 1w96A 487 :WGYFSVGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=104989 # 1zpsA.511.38 read from T0547.t06.many.frag # found chain 1zpsA in training set T0547 511 :LGFFLVGAY 1zpsA 39 :VAYMNREAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=104990 # 1bu6O.511.303 read from T0547.t06.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)G512 (1bu6O)A305 because E (beta_S) conformation "forbidden" or filtered. T0547 511 :L 1bu6O 304 :G T0547 513 :FFLVGAY 1bu6O 306 :VFMAGAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=104992 # 1usyA.511.126 read from T0547.t06.many.frag # found chain 1usyA in template set T0547 511 :LGFFLVGAY 1usyA 127 :VEIGHTGVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=104993 # 1z6nA.511.87 read from T0547.t06.many.frag # found chain 1z6nA in training set Warning: unaligning (T0547)G512 (1z6nA)A89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1z6nA)G94 because H (helix) conformation "forbidden" or filtered. T0547 511 :L 1z6nA 88 :L T0547 513 :FFLV 1z6nA 90 :IISK T0547 518 :AY 1z6nA 95 :RA Number of specific fragments extracted= 3 number of extra gaps= 2 total=104996 # 1zkdA.511.294 read from T0547.t06.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)F513 (1zkdA)P297 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)F514 (1zkdA)V298 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1zkdA)G301 because H (helix) conformation "forbidden" or filtered. T0547 511 :LG 1zkdA 295 :HG T0547 515 :LV 1zkdA 299 :TQ T0547 518 :AY 1zkdA 302 :AF Number of specific fragments extracted= 3 number of extra gaps= 2 total=104999 # 1xg4A.511.230 read from T0547.t06.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)G512 (1xg4A)A233 because E (beta_S) conformation "forbidden" or filtered. T0547 511 :L 1xg4A 232 :M T0547 513 :FFLVGAY 1xg4A 234 :LYPLSAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105001 # 2amdA.511.205 read from T0547.t06.many.frag # found chain 2amdA in template set T0547 511 :LGFFLVGAY 2amdA 201 :TLNVLAWLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=105002 # 1knyA.511.76 read from T0547.t06.many.frag # found chain 1knyA in template set Warning: unaligning (T0547)G512 (1knyA)N78 because E (beta_S) conformation "forbidden" or filtered. T0547 511 :L 1knyA 77 :V T0547 513 :FFLVGAY 1knyA 79 :FYSEEIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105004 # 1t7lA.511.695 read from T0547.t06.many.frag # found chain 1t7lA in template set Warning: unaligning (T0547)G517 (1t7lA)D670 because N (gamma') conformation "forbidden" or filtered. T0547 511 :LGFFLV 1t7lA 664 :IGVGVW T0547 518 :AY 1t7lA 671 :IH Number of specific fragments extracted= 2 number of extra gaps= 1 total=105006 # 2c1lA.511.341 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 511 :LGFFLVGAY 2c1lA 342 :FGYISNEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=105007 # 1kv7A.511.468 read from T0547.t06.many.frag # found chain 1kv7A in training set T0547 511 :LGFFLVGAY 1kv7A 497 :MAHCHLLEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=105008 # 1tg7A.511.755 read from T0547.t06.many.frag # found chain 1tg7A in template set Warning: unaligning (T0547)Y519 (1tg7A)G804 because S (epsilon) conformation "forbidden" or filtered. T0547 511 :LGFFLVGA 1tg7A 796 :ITVVIDNM Number of specific fragments extracted= 1 number of extra gaps= 1 total=105009 # 1tl9A.511.161 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 511 :LGFFLVGAY 1tl9A 187 :WSALLEKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=105010 # 1s3eA.511.340 read from T0547.t06.many.frag # found chain 1s3eA in training set Warning: unaligning (T0547)G512 (1s3eA)G342 because E (beta_S) conformation "forbidden" or filtered. T0547 511 :L 1s3eA 341 :M T0547 513 :FFLVGAY 1s3eA 343 :FILAHKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=105012 # 1p3dA.511.369 read from T0547.t06.many.frag # found chain 1p3dA in training set Warning: unaligning (T0547)G512 (1p3dA)M371 because E (beta_S) conformation "forbidden" or filtered. T0547 511 :L 1p3dA 370 :V T0547 513 :FFLVGAY 1p3dA 372 :IFQPHRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=105014 # 1w5qA.511.280 read from T0547.t06.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)G512 (1w5qA)V282 because E (beta_S) conformation "forbidden" or filtered. T0547 511 :L 1w5qA 281 :F T0547 513 :FFLVGAY 1w5qA 283 :YQVSGEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=105016 # 1tn6A.511.310 read from T0547.t06.many.frag # found chain 1tn6A in template set T0547 511 :LGFFLVGAY 1tn6A 311 :LIAFLVDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=105017 # 1guiA.511.131 read from T0547.t06.many.frag # found chain 1guiA in template set Warning: unaligning (T0547)G512 (1guiA)I135 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A518 (1guiA)E141 because T (delta_L) conformation "forbidden" or filtered. T0547 511 :L 1guiA 134 :Q T0547 513 :FFLVG 1guiA 136 :SFELG T0547 519 :Y 1guiA 142 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=105020 # 1nwaA.511.114 read from T0547.t06.many.frag # found chain 1nwaA in training set T0547 511 :LGFFLVGAY 1nwaA 94 :SAIFYFDEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=105021 # 1l1lA.511.469 read from T0547.t06.many.frag # found chain 1l1lA in training set T0547 511 :LGFFLVGAY 1l1lA 470 :IGISMSGIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=105022 # 1gycA.511.197 read from T0547.t06.many.frag # found chain 1gycA in template set Warning: unaligning (T0547)G517 (1gycA)S204 because P (beta_P) conformation "forbidden" or filtered. T0547 511 :LGFFLV 1gycA 198 :FRLVSI T0547 518 :AY 1gycA 205 :CD Number of specific fragments extracted= 2 number of extra gaps= 1 total=105024 # 1zkoA.511.31 read from T0547.t06.many.frag # found chain 1zkoA in training set T0547 511 :LGFFLVGAY 1zkoA 20 :ATVGITNHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105025 # 1uocA.511.194 read from T0547.t06.many.frag # found chain 1uocA in template set T0547 511 :LGFFLVGAY 1uocA 195 :PNFYDLNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105026 # 1bu6O.512.304 read from T0547.t06.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)G517 (1bu6O)G310 because H (helix) conformation "forbidden" or filtered. T0547 512 :GFFLV 1bu6O 305 :AVFMA T0547 518 :AYQ 1bu6O 311 :ASI Number of specific fragments extracted= 2 number of extra gaps= 1 total=105028 # 1khxA.512.198 read from T0547.t06.many.frag # found chain 1khxA in training set T0547 512 :GFFLVGAYQ 1khxA 439 :ELHLNGPLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=105029 # 1pot.512.202 read from T0547.t06.many.frag # found chain 1pot in training set T0547 512 :GFFLVGAYQ 1pot 226 :GMIWNGSAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=105030 # 1usyA.512.127 read from T0547.t06.many.frag # found chain 1usyA in template set T0547 512 :GFFLVGAYQ 1usyA 128 :EIGHTGVYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105031 # 1zkdA.512.295 read from T0547.t06.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)G512 (1zkdA)G296 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)F513 (1zkdA)P297 because C (cis) conformation "forbidden" or filtered. T0547 514 :FLVGAYQ 1zkdA 298 :VTQGAFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=105032 # 1oruA.512.69 read from T0547.t06.many.frag # found chain 1oruA in training set Warning: unaligning (T0547)G512 (1oruA)S67 because E (beta_S) conformation "forbidden" or filtered. T0547 513 :FFLVGAYQ 1oruA 68 :IVSIEECN Number of specific fragments extracted= 1 number of extra gaps= 1 total=105033 # 1z6nA.512.88 read from T0547.t06.many.frag # found chain 1z6nA in training set Warning: unaligning (T0547)G512 (1z6nA)A89 because E (beta_S) conformation "forbidden" or filtered. T0547 513 :FFLVGAYQ 1z6nA 90 :IISKGRAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=105034 # 1tyjA.512.88 read from T0547.t06.many.frag # found chain 1tyjA in template set T0547 512 :GFFLVGAYQ 1tyjA 90 :GRLYMNLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105035 # 1xg4A.512.231 read from T0547.t06.many.frag # found chain 1xg4A in training set Warning: unaligning (T0547)G512 (1xg4A)A233 because E (beta_S) conformation "forbidden" or filtered. T0547 513 :FFLVGAYQ 1xg4A 234 :LYPLSAFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=105036 # 1zpsA.512.39 read from T0547.t06.many.frag # found chain 1zpsA in training set T0547 512 :GFFLVGAYQ 1zpsA 40 :AYMNREALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=105037 # 1svsA.512.265 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 512 :GFFLVGAYQ 1svsA 267 :FLNKKDLFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105038 # 2amdA.512.206 read from T0547.t06.many.frag # found chain 2amdA in template set T0547 512 :GFFLVGAYQ 2amdA 202 :LNVLAWLYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105039 # 1lam.512.356 read from T0547.t06.many.frag # found chain 1lam in training set T0547 512 :GFFLVGAYQ 1lam 357 :AATLTGAMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=105040 # 1tl9A.512.162 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 512 :GFFLVGAYQ 1tl9A 188 :SALLEKAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105041 # 1yavA.512.128 read from T0547.t06.many.frag # found chain 1yavA in template set T0547 512 :GFFLVGAYQ 1yavA 129 :GIFTRRVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105042 # 1rlr.512.515 read from T0547.t06.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)F513 because of BadResidue code BAD_PEPTIDE in next template residue (1rlr)I518 Warning: unaligning (T0547)F514 because of BadResidue code BAD_PEPTIDE at template residue (1rlr)I518 T0547 512 :G 1rlr 516 :G T0547 515 :LVGAYQ 1rlr 519 :NFAYYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105044 # 1knyA.512.77 read from T0547.t06.many.frag # found chain 1knyA in template set T0547 512 :GFFLVGAYQ 1knyA 78 :NFYSEEILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105045 # 1zkoA.512.32 read from T0547.t06.many.frag # found chain 1zkoA in training set Warning: unaligning (T0547)G512 (1zkoA)T21 because P (beta_P) conformation "forbidden" or filtered. T0547 513 :FFLVGAYQ 1zkoA 22 :VGITNHAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=105046 # 2c1lA.512.342 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 512 :GFFLVGAYQ 2c1lA 343 :GYISNEEFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=105047 # 1tn6A.512.311 read from T0547.t06.many.frag # found chain 1tn6A in template set T0547 512 :GFFLVGAYQ 1tn6A 312 :IAFLVDIYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105048 # 1kv7A.512.469 read from T0547.t06.many.frag # found chain 1kv7A in training set T0547 512 :GFFLVGAYQ 1kv7A 498 :AHCHLLEHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105049 # 1uocA.512.195 read from T0547.t06.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)G512 (1uocA)N196 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)F513 (1uocA)F197 because Y (epsilon') conformation "forbidden" or filtered. T0547 514 :FLVGAYQ 1uocA 198 :YDLNLVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=105050 # 1w5qA.512.281 read from T0547.t06.many.frag # found chain 1w5qA in training set Warning: unaligning (T0547)G512 (1w5qA)V282 because E (beta_S) conformation "forbidden" or filtered. T0547 513 :FFLVGAYQ 1w5qA 283 :YQVSGEYA Number of specific fragments extracted= 1 number of extra gaps= 1 total=105051 # 1yt8A.512.442 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 512 :GFFLVGAYQ 1yt8A 443 :ARFAVAEVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=105052 # 1ujpA.512.224 read from T0547.t06.many.frag # found chain 1ujpA in training set Warning: unaligning (T0547)G512 (1ujpA)G225 because E (beta_S) conformation "forbidden" or filtered. T0547 513 :FFLVGAYQ 1ujpA 226 :VVVGSALV Number of specific fragments extracted= 1 number of extra gaps= 1 total=105053 # 1hi9A.512.150 read from T0547.t06.many.frag # found chain 1hi9A in template set T0547 512 :GFFLVGAYQ 1hi9A 151 :VAGDDRAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105054 # 1l1lA.512.470 read from T0547.t06.many.frag # found chain 1l1lA in training set Warning: unaligning (T0547)G512 (1l1lA)G471 because D (zeta) conformation "forbidden" or filtered. T0547 513 :FFLVGAYQ 1l1lA 472 :ISMSGIQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=105055 # 1nwaA.512.115 read from T0547.t06.many.frag # found chain 1nwaA in training set Warning: unaligning (T0547)V516 (1nwaA)F99 because G (3-10) conformation "forbidden" or filtered. T0547 512 :GFFL 1nwaA 95 :AIFY T0547 517 :GAYQ 1nwaA 100 :DEQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=105057 # 1s4bP.512.350 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 512 :GFFLVGAYQ 1s4bP 366 :THGLLGIYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=105058 # 1f86A.512.61 read from T0547.t06.many.frag # found chain 1f86A in training set T0547 512 :GFFLVGAYQ 1f86A 71 :VEIDTKSYW Number of specific fragments extracted= 1 number of extra gaps= 0 total=105059 # 1bu6O.513.305 read from T0547.t06.many.frag # found chain 1bu6O in template set T0547 513 :FFLVGAYQE 1bu6O 306 :VFMAGASIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=105060 # 1z6nA.513.89 read from T0547.t06.many.frag # found chain 1z6nA in training set T0547 513 :FFLVGAYQE 1z6nA 90 :IISKGRAED Number of specific fragments extracted= 1 number of extra gaps= 0 total=105061 # 1lam.513.357 read from T0547.t06.many.frag # found chain 1lam in training set T0547 513 :FFLVGAYQE 1lam 358 :ATLTGAMDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105062 # 1usyA.513.128 read from T0547.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)F514 (1usyA)G130 because Y (epsilon') conformation "forbidden" or filtered. T0547 513 :F 1usyA 129 :I T0547 515 :LVGAYQE 1usyA 131 :HTGVYED Number of specific fragments extracted= 2 number of extra gaps= 1 total=105064 # 1zkdA.513.296 read from T0547.t06.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)F513 (1zkdA)P297 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)F514 (1zkdA)V298 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G517 (1zkdA)G301 because H (helix) conformation "forbidden" or filtered. T0547 515 :LV 1zkdA 299 :TQ T0547 518 :AYQE 1zkdA 302 :AFLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=105066 # 1pot.513.203 read from T0547.t06.many.frag # found chain 1pot in training set Warning: unaligning (T0547)G517 (1pot)G231 because H (helix) conformation "forbidden" or filtered. T0547 513 :FFLV 1pot 227 :MIWN T0547 518 :AYQE 1pot 232 :SAFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105068 # 1khxA.513.199 read from T0547.t06.many.frag # found chain 1khxA in training set T0547 513 :FFLVGAYQE 1khxA 440 :LHLNGPLQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=105069 # 2amdA.513.207 read from T0547.t06.many.frag # found chain 2amdA in template set T0547 513 :FFLVGAYQE 2amdA 203 :NVLAWLYAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105070 # 1xg4A.513.232 read from T0547.t06.many.frag # found chain 1xg4A in training set T0547 513 :FFLVGAYQE 1xg4A 234 :LYPLSAFRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105071 # 1tl9A.513.163 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 513 :FFLVGAYQE 1tl9A 189 :ALLEKAYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105072 # 1oruA.513.70 read from T0547.t06.many.frag # found chain 1oruA in training set T0547 513 :FFLVGAYQE 1oruA 68 :IVSIEECNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105073 # 1zpsA.513.40 read from T0547.t06.many.frag # found chain 1zpsA in training set T0547 513 :FFLVGAYQE 1zpsA 41 :YMNREALRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=105074 # 1s4bP.513.351 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 513 :FFLVGAYQE 1s4bP 367 :HGLLGIYQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105075 # 1svsA.513.266 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)L515 (1svsA)K270 because L (left) conformation "forbidden" or filtered. T0547 513 :FF 1svsA 268 :LN T0547 516 :VGAYQE 1svsA 271 :KDLFEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=105077 # 1rlr.513.516 read from T0547.t06.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)F513 because of BadResidue code BAD_PEPTIDE in next template residue (1rlr)I518 Warning: unaligning (T0547)F514 because of BadResidue code BAD_PEPTIDE at template residue (1rlr)I518 Warning: unaligning (T0547)L515 (1rlr)N519 because L (left) conformation "forbidden" or filtered. T0547 516 :VGAYQE 1rlr 520 :FAYYLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=105078 # 1yt8A.513.443 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 513 :FFLVGAYQE 1yt8A 444 :RFAVAEVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105079 # 1zkoA.513.33 read from T0547.t06.many.frag # found chain 1zkoA in training set T0547 513 :FFLVGAYQE 1zkoA 22 :VGITNHAQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105080 # 1tn6A.513.312 read from T0547.t06.many.frag # found chain 1tn6A in template set T0547 513 :FFLVGAYQE 1tn6A 313 :AFLVDIYED Number of specific fragments extracted= 1 number of extra gaps= 0 total=105081 # 1sqwA.513.97 read from T0547.t06.many.frag # found chain 1sqwA in template set T0547 513 :FFLVGAYQE 1sqwA 98 :WIKPGAEQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=105082 # 1uocA.513.196 read from T0547.t06.many.frag # found chain 1uocA in template set T0547 513 :FFLVGAYQE 1uocA 197 :FYDLNLVYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105083 # 2bfwA.513.143 read from T0547.t06.many.frag # found chain 2bfwA in training set T0547 513 :FFLVGAYQE 2bfwA 357 :ASAVGGLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=105084 # 2c1lA.513.343 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 513 :FFLVGAYQE 2c1lA 344 :YISNEEFGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=105085 # 1ujpA.513.225 read from T0547.t06.many.frag # found chain 1ujpA in training set T0547 513 :FFLVGAYQE 1ujpA 226 :VVVGSALVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=105086 # 1kv7A.513.470 read from T0547.t06.many.frag # found chain 1kv7A in training set T0547 513 :FFLVGAYQE 1kv7A 499 :HCHLLEHED Number of specific fragments extracted= 1 number of extra gaps= 0 total=105087 # 1j0pA.513.77 read from T0547.t06.many.frag # found chain 1j0pA in training set Warning: unaligning (T0547)G517 (1j0pA)G81 because H (helix) conformation "forbidden" or filtered. T0547 513 :FFLV 1j0pA 77 :KSCV T0547 518 :AYQE 1j0pA 82 :CHLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=105089 # 1hi9A.513.151 read from T0547.t06.many.frag # found chain 1hi9A in template set T0547 513 :FFLVGAYQE 1hi9A 152 :AGDDRAAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105090 # 1v4pA.513.12 read from T0547.t06.many.frag # found chain 1v4pA in training set T0547 513 :FFLVGAYQE 1v4pA 13 :HVVKGAVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105091 # 1l1lA.513.471 read from T0547.t06.many.frag # found chain 1l1lA in training set T0547 513 :FFLVGAYQE 1l1lA 472 :ISMSGIQDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=105092 # 1knyA.513.78 read from T0547.t06.many.frag # found chain 1knyA in template set T0547 513 :FFLVGAYQE 1knyA 79 :FYSEEILLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=105093 # 1tyjA.513.89 read from T0547.t06.many.frag # found chain 1tyjA in template set T0547 513 :FFLVGAYQE 1tyjA 91 :RLYMNLSAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=105094 # 1bu6O.514.306 read from T0547.t06.many.frag # found chain 1bu6O in template set T0547 514 :FLVGAYQEV 1bu6O 307 :FMAGASIQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=105095 # 1lam.514.358 read from T0547.t06.many.frag # found chain 1lam in training set T0547 514 :FLVGAYQEV 1lam 359 :TLTGAMDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105096 # 1z6nA.514.90 read from T0547.t06.many.frag # found chain 1z6nA in training set T0547 514 :FLVGAYQEV 1z6nA 91 :ISKGRAEDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=105097 # 1s4bP.514.352 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 514 :FLVGAYQEV 1s4bP 368 :GLLGIYQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105098 # 1usyA.514.129 read from T0547.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)G517 (1usyA)G133 because H (helix) conformation "forbidden" or filtered. T0547 514 :FLV 1usyA 130 :GHT T0547 518 :AYQEV 1usyA 134 :VYEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105100 # 2amdA.514.208 read from T0547.t06.many.frag # found chain 2amdA in template set T0547 514 :FLVGAYQEV 2amdA 204 :VLAWLYAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105101 # 1tl9A.514.164 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 514 :FLVGAYQEV 1tl9A 190 :LLEKAYAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105102 # 1yt8A.514.444 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 514 :FLVGAYQEV 1yt8A 445 :FAVAEVQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105103 # 1zkdA.514.297 read from T0547.t06.many.frag # found chain 1zkdA in template set T0547 514 :FLVGAYQEV 1zkdA 298 :VTQGAFLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=105104 # 1pot.514.204 read from T0547.t06.many.frag # found chain 1pot in training set T0547 514 :FLVGAYQEV 1pot 228 :IWNGSAFVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105105 # 1zpsA.514.41 read from T0547.t06.many.frag # found chain 1zpsA in training set T0547 514 :FLVGAYQEV 1zpsA 42 :MNREALRRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105106 # 1zkoA.514.34 read from T0547.t06.many.frag # found chain 1zkoA in training set T0547 514 :FLVGAYQEV 1zkoA 23 :GITNHAQEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=105107 # 1xg4A.514.233 read from T0547.t06.many.frag # found chain 1xg4A in training set T0547 514 :FLVGAYQEV 1xg4A 235 :YPLSAFRAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=105108 # 1vkyA.514.321 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 514 :FLVGAYQEV 1vkyA 310 :FVMEAYREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105109 # 1oruA.514.71 read from T0547.t06.many.frag # found chain 1oruA in training set T0547 514 :FLVGAYQEV 1oruA 69 :VSIEECNEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105110 # 1tn6A.514.313 read from T0547.t06.many.frag # found chain 1tn6A in template set T0547 514 :FLVGAYQEV 1tn6A 314 :FLVDIYEDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=105111 # 1uocA.514.197 read from T0547.t06.many.frag # found chain 1uocA in template set T0547 514 :FLVGAYQEV 1uocA 198 :YDLNLVYKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105112 # 2bfwA.514.144 read from T0547.t06.many.frag # found chain 2bfwA in training set T0547 514 :FLVGAYQEV 2bfwA 358 :SAVGGLRDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105113 # 1khxA.514.200 read from T0547.t06.many.frag # found chain 1khxA in training set T0547 514 :FLVGAYQEV 1khxA 441 :HLNGPLQWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105114 # 1rlr.514.517 read from T0547.t06.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)F514 because of BadResidue code BAD_PEPTIDE at template residue (1rlr)I518 Warning: unaligning (T0547)L515 (1rlr)N519 because L (left) conformation "forbidden" or filtered. T0547 516 :VGAYQEV 1rlr 520 :FAYYLAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=105115 # 1svsA.514.267 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)L515 (1svsA)K270 because L (left) conformation "forbidden" or filtered. T0547 514 :F 1svsA 269 :N T0547 516 :VGAYQEV 1svsA 271 :KDLFEEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=105117 # 1sqwA.514.98 read from T0547.t06.many.frag # found chain 1sqwA in template set T0547 514 :FLVGAYQEV 1sqwA 99 :IKPGAEQSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=105118 # 1dmhA.514.202 read from T0547.t06.many.frag # found chain 1dmhA in training set T0547 514 :FLVGAYQEV 1dmhA 203 :PPEGPTQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105119 # 1v4pA.514.13 read from T0547.t06.many.frag # found chain 1v4pA in training set Warning: unaligning (T0547)G517 (1v4pA)G17 because H (helix) conformation "forbidden" or filtered. T0547 514 :FLV 1v4pA 14 :VVK T0547 518 :AYQEV 1v4pA 18 :AVVKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105121 # 1j0pA.514.78 read from T0547.t06.many.frag # found chain 1j0pA in training set T0547 514 :FLVGAYQEV 1j0pA 78 :SCVGCHLET Number of specific fragments extracted= 1 number of extra gaps= 0 total=105122 # 2a14A.514.170 read from T0547.t06.many.frag # found chain 2a14A in training set T0547 514 :FLVGAYQEV 2a14A 171 :CSLDAYRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105123 # 2bg1A.514.317 read from T0547.t06.many.frag # found chain 2bg1A in template set T0547 514 :FLVGAYQEV 2bg1A 615 :IMQGLLREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105124 # 1wddA.514.384 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 514 :FLVGAYQEV 1wddA 385 :WHMPALTEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105125 # 1l1lA.514.472 read from T0547.t06.many.frag # found chain 1l1lA in training set T0547 514 :FLVGAYQEV 1l1lA 473 :SMSGIQDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105126 # 1ujpA.514.226 read from T0547.t06.many.frag # found chain 1ujpA in training set T0547 514 :FLVGAYQEV 1ujpA 227 :VVGSALVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105127 # 1bu6O.515.307 read from T0547.t06.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)G517 (1bu6O)G310 because H (helix) conformation "forbidden" or filtered. T0547 515 :LV 1bu6O 308 :MA T0547 518 :AYQEVL 1bu6O 311 :ASIQWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105129 # 1s4bP.515.353 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 515 :LVGAYQEVL 1s4bP 369 :LLGIYQELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105130 # 1lam.515.359 read from T0547.t06.many.frag # found chain 1lam in training set T0547 515 :LVGAYQEVL 1lam 360 :LTGAMDIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105131 # 1z6nA.515.91 read from T0547.t06.many.frag # found chain 1z6nA in training set T0547 515 :LVGAYQEVL 1z6nA 92 :SKGRAEDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105132 # 1usyA.515.130 read from T0547.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)G517 (1usyA)G133 because H (helix) conformation "forbidden" or filtered. T0547 515 :LV 1usyA 131 :HT T0547 518 :AYQEVL 1usyA 134 :VYEDLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105134 # 2amdA.515.209 read from T0547.t06.many.frag # found chain 2amdA in template set T0547 515 :LVGAYQEVL 2amdA 205 :LAWLYAAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105135 # 1tl9A.515.165 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 515 :LVGAYQEVL 1tl9A 191 :LEKAYAKVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=105136 # 1yt8A.515.445 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 515 :LVGAYQEVL 1yt8A 446 :AVAEVQALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=105137 # 1zkdA.515.298 read from T0547.t06.many.frag # found chain 1zkdA in template set T0547 515 :LVGAYQEVL 1zkdA 299 :TQGAFLKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105138 # 1zkoA.515.35 read from T0547.t06.many.frag # found chain 1zkoA in training set T0547 515 :LVGAYQEVL 1zkoA 24 :ITNHAQEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105139 # 1dmhA.515.203 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)V516 (1dmhA)E205 because G (3-10) conformation "forbidden" or filtered. T0547 515 :L 1dmhA 204 :P T0547 517 :GAYQEVL 1dmhA 206 :GPTQQLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105141 # 1zpsA.515.42 read from T0547.t06.many.frag # found chain 1zpsA in training set T0547 515 :LVGAYQEVL 1zpsA 43 :NREALRRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105142 # 1vkyA.515.322 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 515 :LVGAYQEVL 1vkyA 311 :VMEAYREAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105143 # 1uocA.515.198 read from T0547.t06.many.frag # found chain 1uocA in template set T0547 515 :LVGAYQEVL 1uocA 199 :DLNLVYKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=105144 # 1tn6A.515.314 read from T0547.t06.many.frag # found chain 1tn6A in template set T0547 515 :LVGAYQEVL 1tn6A 315 :LVDIYEDML Number of specific fragments extracted= 1 number of extra gaps= 0 total=105145 # 1sqwA.515.99 read from T0547.t06.many.frag # found chain 1sqwA in template set T0547 515 :LVGAYQEVL 1sqwA 100 :KPGAEQSFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105146 # 1wddA.515.385 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 515 :LVGAYQEVL 1wddA 386 :HMPALTEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=105147 # 2a14A.515.171 read from T0547.t06.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)L515 (2a14A)S172 because Y (epsilon') conformation "forbidden" or filtered. T0547 516 :VGAYQEVL 2a14A 173 :LDAYRAAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=105148 # 1v4pA.515.14 read from T0547.t06.many.frag # found chain 1v4pA in training set Warning: unaligning (T0547)G517 (1v4pA)G17 because H (helix) conformation "forbidden" or filtered. T0547 515 :LV 1v4pA 15 :VK T0547 518 :AYQEVL 1v4pA 18 :AVVKVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105150 # 1pot.515.205 read from T0547.t06.many.frag # found chain 1pot in training set T0547 515 :LVGAYQEVL 1pot 229 :WNGSAFVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=105151 # 1rlr.515.518 read from T0547.t06.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)L515 (1rlr)N519 because L (left) conformation "forbidden" or filtered. T0547 516 :VGAYQEVL 1rlr 520 :FAYYLAKH Number of specific fragments extracted= 1 number of extra gaps= 1 total=105152 # 1oruA.515.72 read from T0547.t06.many.frag # found chain 1oruA in training set T0547 515 :LVGAYQEVL 1oruA 70 :SIEECNEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105153 # 2bg1A.515.318 read from T0547.t06.many.frag # found chain 2bg1A in template set T0547 515 :LVGAYQEVL 2bg1A 616 :MQGLLREVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105154 # 1jmuB.515.553 read from T0547.t06.many.frag # found chain 1jmuB in template set T0547 515 :LVGAYQEVL 1jmuB 596 :ASRAMQAFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105155 # 1xmxA.515.257 read from T0547.t06.many.frag # found chain 1xmxA in template set T0547 515 :LVGAYQEVL 1xmxA 256 :VHSTVKQIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=105156 # 1j0pA.515.79 read from T0547.t06.many.frag # found chain 1j0pA in training set T0547 515 :LVGAYQEVL 1j0pA 79 :CVGCHLETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105157 # 1n62A.515.85 read from T0547.t06.many.frag # found chain 1n62A in training set T0547 515 :LVGAYQEVL 1n62A 86 :TLSALQEGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=105158 # 1xg4A.515.234 read from T0547.t06.many.frag # found chain 1xg4A in training set T0547 515 :LVGAYQEVL 1xg4A 236 :PLSAFRAMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=105159 # 2bfwA.515.145 read from T0547.t06.many.frag # found chain 2bfwA in training set T0547 515 :LVGAYQEVL 2bfwA 359 :AVGGLRDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=105160 # 1mkaA.515.88 read from T0547.t06.many.frag # found chain 1mkaA in template set Warning: unaligning (T0547)G517 (1mkaA)G91 because H (helix) conformation "forbidden" or filtered. T0547 515 :LV 1mkaA 89 :LV T0547 518 :AYQEVL 1mkaA 92 :FYLGWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105162 # 1s4bP.516.354 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 516 :VGAYQEVLG 1s4bP 370 :LGIYQELLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=105163 # 1bu6O.516.308 read from T0547.t06.many.frag # found chain 1bu6O in template set T0547 516 :VGAYQEVLG 1bu6O 309 :AGASIQWLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=105164 # 1z6nA.516.92 read from T0547.t06.many.frag # found chain 1z6nA in training set Warning: unaligning (T0547)V522 (1z6nA)D99 because G (3-10) conformation "forbidden" or filtered. T0547 516 :VGAYQE 1z6nA 93 :KGRAED T0547 523 :LG 1z6nA 100 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=105166 # 1lam.516.360 read from T0547.t06.many.frag # found chain 1lam in training set Warning: unaligning (T0547)G517 (1lam)G362 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)G524 (1lam)G369 because S (epsilon) conformation "forbidden" or filtered. T0547 516 :V 1lam 361 :T T0547 518 :AYQEVL 1lam 363 :AMDIAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=105168 # 2amdA.516.210 read from T0547.t06.many.frag # found chain 2amdA in template set T0547 516 :VGAYQEVLG 2amdA 206 :AWLYAAVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=105169 # 1yt8A.516.446 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 516 :VGAYQEVLG 1yt8A 447 :VAEVQALSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=105170 # 1usyA.516.131 read from T0547.t06.many.frag # found chain 1usyA in template set T0547 516 :VGAYQEVLG 1usyA 132 :TGVYEDLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105171 # 1dmhA.516.204 read from T0547.t06.many.frag # found chain 1dmhA in training set T0547 516 :VGAYQEVLG 1dmhA 205 :EGPTQQLLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=105172 # 1tl9A.516.166 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 516 :VGAYQEVLG 1tl9A 192 :EKAYAKVNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=105173 # 1wddA.516.386 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 516 :VGAYQEVLG 1wddA 387 :MPALTEIFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=105174 # 2a14A.516.172 read from T0547.t06.many.frag # found chain 2a14A in training set T0547 516 :VGAYQEVLG 2a14A 173 :LDAYRAALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=105175 # 1jmuB.516.554 read from T0547.t06.many.frag # found chain 1jmuB in template set Warning: unaligning (T0547)G524 (1jmuB)G605 because H (helix) conformation "forbidden" or filtered. T0547 516 :VGAYQEVL 1jmuB 597 :SRAMQAFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=105176 # 1zkoA.516.36 read from T0547.t06.many.frag # found chain 1zkoA in training set T0547 516 :VGAYQEVLG 1zkoA 25 :TNHAQEQLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=105177 # 1vkyA.516.323 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 516 :VGAYQEVLG 1vkyA 312 :MEAYREAVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105178 # 1uocA.516.199 read from T0547.t06.many.frag # found chain 1uocA in template set T0547 516 :VGAYQEVLG 1uocA 200 :LNLVYKIIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=105179 # 1zkdA.516.299 read from T0547.t06.many.frag # found chain 1zkdA in template set Warning: unaligning (T0547)G517 (1zkdA)G301 because H (helix) conformation "forbidden" or filtered. T0547 516 :V 1zkdA 300 :Q T0547 518 :AYQEVLG 1zkdA 302 :AFLKRLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=105181 # 1tn6A.516.315 read from T0547.t06.many.frag # found chain 1tn6A in template set T0547 516 :VGAYQEVLG 1tn6A 316 :VDIYEDMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105182 # 1zpsA.516.43 read from T0547.t06.many.frag # found chain 1zpsA in training set T0547 516 :VGAYQEVLG 1zpsA 44 :REALRRTLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105183 # 2bg1A.516.319 read from T0547.t06.many.frag # found chain 2bg1A in template set T0547 516 :VGAYQEVLG 2bg1A 617 :QGLLREVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=105184 # 1xmxA.516.258 read from T0547.t06.many.frag # found chain 1xmxA in template set T0547 516 :VGAYQEVLG 1xmxA 257 :HSTVKQIQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=105185 # 1v4pA.516.15 read from T0547.t06.many.frag # found chain 1v4pA in training set T0547 516 :VGAYQEVLG 1v4pA 16 :KGAVVKVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=105186 # 1sqwA.516.100 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)G517 (1sqwA)G102 because H (helix) conformation "forbidden" or filtered. T0547 516 :V 1sqwA 101 :P T0547 518 :AYQEVLG 1sqwA 103 :AEQSFLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=105188 # 1rlr.516.519 read from T0547.t06.many.frag # found chain 1rlr in template set Warning: unaligning (T0547)V522 (1rlr)K526 because G (3-10) conformation "forbidden" or filtered. T0547 516 :VGAYQE 1rlr 520 :FAYYLA T0547 523 :LG 1rlr 527 :HG Number of specific fragments extracted= 2 number of extra gaps= 1 total=105190 # 1oruA.516.73 read from T0547.t06.many.frag # found chain 1oruA in training set T0547 516 :VGAYQEVLG 1oruA 71 :IEECNEIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105191 # 1mkaA.516.89 read from T0547.t06.many.frag # found chain 1mkaA in template set T0547 516 :VGAYQEVLG 1mkaA 90 :VGFYLGWLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=105192 # 1l8bA.516.103 read from T0547.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)G524 (1l8bA)G139 because G (3-10) conformation "forbidden" or filtered. T0547 516 :VGAYQEVL 1l8bA 131 :LETLLCLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=105193 # 1zupA.516.258 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 516 :VGAYQEVLG 1zupA 247 :RKVFDDLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105194 # 1n62A.516.86 read from T0547.t06.many.frag # found chain 1n62A in training set T0547 516 :VGAYQEVLG 1n62A 87 :LSALQEGFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=105195 # 2bfwA.516.146 read from T0547.t06.many.frag # found chain 2bfwA in training set T0547 516 :VGAYQEVLG 2bfwA 360 :VGGLRDIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105196 # 1j0pA.516.80 read from T0547.t06.many.frag # found chain 1j0pA in training set T0547 516 :VGAYQEVLG 1j0pA 80 :VGCHLETAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=105197 # 1s4bP.517.355 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 517 :GAYQEVLGM 1s4bP 371 :GIYQELLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105198 # 1bu6O.517.309 read from T0547.t06.many.frag # found chain 1bu6O in template set T0547 517 :GAYQEVLGM 1bu6O 310 :GASIQWLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=105199 # 1z6nA.517.93 read from T0547.t06.many.frag # found chain 1z6nA in training set T0547 517 :GAYQEVLGM 1z6nA 94 :GRAEDDLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=105200 # 1yt8A.517.447 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 517 :GAYQEVLGM 1yt8A 448 :AEVQALSGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105201 # 2amdA.517.211 read from T0547.t06.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)G524 (2amdA)N214 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (2amdA)G215 because T (delta_L) conformation "forbidden" or filtered. T0547 517 :GAYQEVL 2amdA 207 :WLYAAVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=105202 # 1lam.517.361 read from T0547.t06.many.frag # found chain 1lam in training set T0547 517 :GAYQEVLGM 1lam 362 :GAMDIALGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=105203 # 1jmuB.517.555 read from T0547.t06.many.frag # found chain 1jmuB in template set T0547 517 :GAYQEVLGM 1jmuB 598 :RAMQAFIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=105204 # 1dmhA.517.205 read from T0547.t06.many.frag # found chain 1dmhA in training set T0547 517 :GAYQEVLGM 1dmhA 206 :GPTQQLLNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=105205 # 1usyA.517.132 read from T0547.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0547)G517 (1usyA)G133 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (1usyA)E141 because G (3-10) conformation "forbidden" or filtered. T0547 518 :AYQEVLG 1usyA 134 :VYEDLLK Number of specific fragments extracted= 1 number of extra gaps= 2 total=105206 # 1wddA.517.387 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 517 :GAYQEVLGM 1wddA 388 :PALTEIFGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=105207 # 1tl9A.517.167 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 517 :GAYQEVLG 1tl9A 193 :KAYAKVNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=105208 # 2a14A.517.173 read from T0547.t06.many.frag # found chain 2a14A in training set T0547 517 :GAYQEVLGM 2a14A 174 :DAYRAALCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=105209 # 1xmxA.517.259 read from T0547.t06.many.frag # found chain 1xmxA in template set T0547 517 :GAYQEVLGM 1xmxA 258 :STVKQIQDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=105210 # 1vkyA.517.324 read from T0547.t06.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)M525 (1vkyA)R321 because G (3-10) conformation "forbidden" or filtered. T0547 517 :GAYQEVLG 1vkyA 313 :EAYREAVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=105211 # 1zkoA.517.37 read from T0547.t06.many.frag # found chain 1zkoA in training set T0547 517 :GAYQEVLGM 1zkoA 26 :NHAQEQLGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=105212 # 1tn6A.517.316 read from T0547.t06.many.frag # found chain 1tn6A in template set T0547 517 :GAYQEVLGM 1tn6A 317 :DIYEDMLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=105213 # 1uocA.517.200 read from T0547.t06.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)G524 (1uocA)Q208 because N (gamma') conformation "forbidden" or filtered. T0547 517 :GAYQEVL 1uocA 201 :NLVYKII T0547 525 :M 1uocA 209 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=105215 # 1l8bA.517.104 read from T0547.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)M525 (1l8bA)E140 because L (left) conformation "forbidden" or filtered. T0547 517 :GAYQEVLG 1l8bA 132 :ETLLCLIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=105216 # 2bg1A.517.320 read from T0547.t06.many.frag # found chain 2bg1A in template set Warning: unaligning (T0547)G517 (2bg1A)G618 because H (helix) conformation "forbidden" or filtered. T0547 518 :AYQEVLGM 2bg1A 619 :LLREVLSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=105217 # 1zpsA.517.44 read from T0547.t06.many.frag # found chain 1zpsA in training set T0547 517 :GAYQEVLGM 1zpsA 45 :EALRRTLET Number of specific fragments extracted= 1 number of extra gaps= 0 total=105218 # 1sqwA.517.101 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)G524 (1sqwA)Y109 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (1sqwA)G110 because T (delta_L) conformation "forbidden" or filtered. T0547 517 :GAYQEVL 1sqwA 102 :GAEQSFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=105219 # 1rlr.517.520 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 517 :GAYQEVLGM 1rlr 521 :AYYLAKHGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105220 # 1svsA.517.270 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 517 :GAYQEVLGM 1svsA 272 :DLFEEKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105221 # 1v4pA.517.16 read from T0547.t06.many.frag # found chain 1v4pA in training set T0547 517 :GAYQEVLGM 1v4pA 17 :GAVVKVLGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=105222 # 1zupA.517.259 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 517 :GAYQEVLGM 1zupA 248 :KVFDDLAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105223 # 2c1lA.517.347 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 517 :GAYQEVLGM 2c1lA 348 :EEFGRIIGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105224 # 1dxrC.517.233 read from T0547.t06.many.frag # found chain 1dxrC in template set Warning: unaligning (T0547)M525 (1dxrC)T242 because Y (epsilon') conformation "forbidden" or filtered. T0547 517 :GAYQEVLG 1dxrC 234 :MSISDSLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=105225 # 2bfwA.517.147 read from T0547.t06.many.frag # found chain 2bfwA in training set T0547 517 :GAYQEVLGM 2bfwA 361 :GGLRDIITN Number of specific fragments extracted= 1 number of extra gaps= 0 total=105226 # 1j0pA.517.81 read from T0547.t06.many.frag # found chain 1j0pA in training set Warning: unaligning (T0547)G524 (1j0pA)G88 because S (epsilon) conformation "forbidden" or filtered. T0547 517 :GAYQEVL 1j0pA 81 :GCHLETA T0547 525 :M 1j0pA 89 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=105228 # 1mkaA.517.90 read from T0547.t06.many.frag # found chain 1mkaA in template set T0547 517 :GAYQEVLGM 1mkaA 91 :GFYLGWLGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=105229 # 1bu6O.518.310 read from T0547.t06.many.frag # found chain 1bu6O in template set T0547 518 :AYQEVLGMK 1bu6O 311 :ASIQWLRDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105230 # 1yt8A.518.448 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 518 :AYQEVLGMK 1yt8A 449 :EVQALSGKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105231 # 1jmuB.518.556 read from T0547.t06.many.frag # found chain 1jmuB in template set T0547 518 :AYQEVLGMK 1jmuB 599 :AMQAFIGDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105232 # 2amdA.518.212 read from T0547.t06.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)M525 (2amdA)G215 because T (delta_L) conformation "forbidden" or filtered. T0547 518 :AYQEVLG 2amdA 208 :LYAAVIN T0547 526 :K 2amdA 216 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=105234 # 1z6nA.518.94 read from T0547.t06.many.frag # found chain 1z6nA in training set Warning: unaligning (T0547)V522 (1z6nA)D99 because G (3-10) conformation "forbidden" or filtered. T0547 518 :AYQE 1z6nA 95 :RAED T0547 523 :LGMK 1z6nA 100 :LRQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=105236 # 1s4bP.518.356 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 518 :AYQEVLGMK 1s4bP 372 :IYQELLGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105237 # 1dmhA.518.206 read from T0547.t06.many.frag # found chain 1dmhA in training set T0547 518 :AYQEVLGMK 1dmhA 207 :PTQQLLNQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105238 # 1lam.518.362 read from T0547.t06.many.frag # found chain 1lam in training set T0547 518 :AYQEVLGMK 1lam 363 :AMDIALGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=105239 # 1wddA.518.388 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 518 :AYQEVLGMK 1wddA 389 :ALTEIFGDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=105240 # 2a14A.518.174 read from T0547.t06.many.frag # found chain 2a14A in training set T0547 518 :AYQEVLGMK 2a14A 175 :AYRAALCNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105241 # 2bfwA.518.148 read from T0547.t06.many.frag # found chain 2bfwA in training set T0547 518 :AYQEVLGMK 2bfwA 362 :GLRDIITNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105242 # 1xmxA.518.260 read from T0547.t06.many.frag # found chain 1xmxA in template set T0547 518 :AYQEVLGMK 1xmxA 259 :TVKQIQDDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=105243 # 1l8bA.518.105 read from T0547.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)G524 (1l8bA)G139 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (1l8bA)E140 because L (left) conformation "forbidden" or filtered. T0547 518 :AYQEVL 1l8bA 133 :TLLCLI T0547 526 :K 1l8bA 141 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=105245 # 1tl9A.518.168 read from T0547.t06.many.frag # found chain 1tl9A in template set T0547 518 :AYQEVLGMK 1tl9A 194 :AYAKVNGSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=105246 # 1tn6A.518.317 read from T0547.t06.many.frag # found chain 1tn6A in template set Warning: unaligning (T0547)K526 (1tn6A)Q326 because L (left) conformation "forbidden" or filtered. T0547 518 :AYQEVLGM 1tn6A 318 :IYEDMLEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=105247 # 1usyA.518.133 read from T0547.t06.many.frag # found chain 1usyA in template set T0547 518 :AYQEVLGMK 1usyA 134 :VYEDLLKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105248 # 1zkoA.518.38 read from T0547.t06.many.frag # found chain 1zkoA in training set Warning: unaligning (T0547)M525 (1zkoA)D34 because P (beta_P) conformation "forbidden" or filtered. T0547 518 :AYQEVLG 1zkoA 27 :HAQEQLG T0547 526 :K 1zkoA 35 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=105250 # 1r6fA.518.212 read from T0547.t06.many.frag # found chain 1r6fA in template set Warning: unaligning (T0547)G524 (1r6fA)G241 because G (3-10) conformation "forbidden" or filtered. T0547 518 :AYQEVL 1r6fA 235 :SIKDFL T0547 525 :MK 1r6fA 242 :SE Number of specific fragments extracted= 2 number of extra gaps= 1 total=105252 # 1dxrC.518.234 read from T0547.t06.many.frag # found chain 1dxrC in template set T0547 518 :AYQEVLGMK 1dxrC 235 :SISDSLGTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=105253 # 2bg1A.518.321 read from T0547.t06.many.frag # found chain 2bg1A in template set T0547 518 :AYQEVLGMK 2bg1A 619 :LLREVLSSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=105254 # 1vkyA.518.325 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 518 :AYQEVLGMK 1vkyA 314 :AYREAVKRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=105255 # 2c1lA.518.348 read from T0547.t06.many.frag # found chain 2c1lA in template set T0547 518 :AYQEVLGMK 2c1lA 349 :EFGRIIGVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105256 # 1uocA.518.201 read from T0547.t06.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)G524 (1uocA)Q208 because N (gamma') conformation "forbidden" or filtered. T0547 518 :AYQEVL 1uocA 202 :LVYKII T0547 525 :MK 1uocA 209 :EF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105258 # 1sqwA.518.102 read from T0547.t06.many.frag # found chain 1sqwA in template set T0547 518 :AYQEVLGMK 1sqwA 103 :AEQSFLYGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=105259 # 1rlr.518.521 read from T0547.t06.many.frag # found chain 1rlr in template set T0547 518 :AYQEVLGMK 1rlr 522 :YYLAKHGKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=105260 # 1zupA.518.260 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 518 :AYQEVLGMK 1zupA 249 :VFDDLAKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105261 # 1n62A.518.88 read from T0547.t06.many.frag # found chain 1n62A in training set T0547 518 :AYQEVLGMK 1n62A 89 :ALQEGFRMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=105262 # 1svsA.518.271 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 518 :AYQEVLGMK 1svsA 273 :LFEEKIKKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=105263 # 1mkaA.518.91 read from T0547.t06.many.frag # found chain 1mkaA in template set T0547 518 :AYQEVLGMK 1mkaA 92 :FYLGWLGGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105264 # 1j93A.518.280 read from T0547.t06.many.frag # found chain 1j93A in template set Warning: unaligning (T0547)M525 (1j93A)P287 because G (3-10) conformation "forbidden" or filtered. T0547 518 :AYQEVLG 1j93A 280 :DGRRRLG T0547 526 :K 1j93A 288 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=105266 # 1jmuB.519.557 read from T0547.t06.many.frag # found chain 1jmuB in template set T0547 519 :YQEVLGMKH 1jmuB 600 :MQAFIGDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=105267 # 1yt8A.519.449 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 519 :YQEVLGMKH 1yt8A 450 :VQALSGKPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105268 # 2amdA.519.213 read from T0547.t06.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)G524 (2amdA)N214 because G (3-10) conformation "forbidden" or filtered. T0547 519 :YQEVL 2amdA 209 :YAAVI T0547 525 :MKH 2amdA 215 :GDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=105270 # 1bu6O.519.311 read from T0547.t06.many.frag # found chain 1bu6O in template set T0547 519 :YQEVLGMKH 1bu6O 312 :SIQWLRDEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=105271 # 1dmhA.519.207 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)H527 (1dmhA)G216 because L (left) conformation "forbidden" or filtered. T0547 519 :YQEVLGMK 1dmhA 208 :TQQLLNQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=105272 # 1r6fA.519.213 read from T0547.t06.many.frag # found chain 1r6fA in template set T0547 519 :YQEVLGMKH 1r6fA 236 :IKDFLGSEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=105273 # 1z6nA.519.95 read from T0547.t06.many.frag # found chain 1z6nA in training set T0547 519 :YQEVLGMKH 1z6nA 96 :AEDDLRQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105274 # 1xmxA.519.261 read from T0547.t06.many.frag # found chain 1xmxA in template set T0547 519 :YQEVLGMKH 1xmxA 260 :VKQIQDDMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105275 # 1lam.519.363 read from T0547.t06.many.frag # found chain 1lam in training set Warning: unaligning (T0547)H527 (1lam)A372 because Y (epsilon') conformation "forbidden" or filtered. T0547 519 :YQEVLGMK 1lam 364 :MDIALGSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=105276 # 1wddA.519.389 read from T0547.t06.many.frag # found chain 1wddA in training set T0547 519 :YQEVLGMKH 1wddA 390 :LTEIFGDDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=105277 # 1s4bP.519.357 read from T0547.t06.many.frag # found chain 1s4bP in template set Warning: unaligning (T0547)K526 (1s4bP)A380 because E (beta_S) conformation "forbidden" or filtered. T0547 519 :YQEVLGM 1s4bP 373 :YQELLGL T0547 527 :H 1s4bP 381 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=105279 # 1l8bA.519.106 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 519 :YQEVLGMKH 1l8bA 134 :LLCLIGESF Number of specific fragments extracted= 1 number of extra gaps= 0 total=105280 # 2c1lA.519.349 read from T0547.t06.many.frag # found chain 2c1lA in template set Warning: unaligning (T0547)H527 because last residue in template chain is (2c1lA)F358 T0547 519 :YQEVLGMK 2c1lA 350 :FGRIIGVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105281 # 1dxrC.519.235 read from T0547.t06.many.frag # found chain 1dxrC in template set Warning: unaligning (T0547)M525 (1dxrC)T242 because Y (epsilon') conformation "forbidden" or filtered. T0547 519 :YQEVLG 1dxrC 236 :ISDSLG T0547 526 :KH 1dxrC 243 :NC Number of specific fragments extracted= 2 number of extra gaps= 1 total=105283 # 2a14A.519.175 read from T0547.t06.many.frag # found chain 2a14A in training set T0547 519 :YQEVLGMKH 2a14A 176 :YRAALCNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105284 # 1omzA.519.215 read from T0547.t06.many.frag # found chain 1omzA in template set T0547 519 :YQEVLGMKH 1omzA 253 :VTRHTGKPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=105285 # 1zkoA.519.39 read from T0547.t06.many.frag # found chain 1zkoA in training set T0547 519 :YQEVLGMKH 1zkoA 28 :AQEQLGDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105286 # 1tl9A.519.169 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 519 :YQEVLG 1tl9A 195 :YAKVNG T0547 526 :KH 1tl9A 202 :YE Number of specific fragments extracted= 2 number of extra gaps= 1 total=105288 # 1n62A.519.89 read from T0547.t06.many.frag # found chain 1n62A in training set T0547 519 :YQEVLGMKH 1n62A 90 :LQEGFRMMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=105289 # 1zupA.519.261 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 519 :YQEVLGMKH 1zupA 250 :FDDLAKTLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105290 # 1tn6A.519.318 read from T0547.t06.many.frag # found chain 1tn6A in template set T0547 519 :YQEVLGMKH 1tn6A 319 :YEDMLENQC Number of specific fragments extracted= 1 number of extra gaps= 0 total=105291 # 2cx1A.519.101 read from T0547.t06.many.frag # found chain 2cx1A in training set Warning: unaligning (T0547)M525 (2cx1A)G107 because T (delta_L) conformation "forbidden" or filtered. T0547 519 :YQEVLG 2cx1A 101 :AIALAK T0547 526 :KH 2cx1A 108 :AH Number of specific fragments extracted= 2 number of extra gaps= 1 total=105293 # 2bg1A.519.322 read from T0547.t06.many.frag # found chain 2bg1A in template set T0547 519 :YQEVLGMKH 2bg1A 620 :LREVLSSRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105294 # 2cxaA.519.190 read from T0547.t06.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)K526 (2cxaA)G181 because T (delta_L) conformation "forbidden" or filtered. T0547 519 :YQEVLGM 2cxaA 174 :CEEFIGH T0547 527 :H 2cxaA 182 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=105296 # 1vkyA.519.326 read from T0547.t06.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)K526 (1vkyA)R322 because L (left) conformation "forbidden" or filtered. T0547 519 :YQEVLGM 1vkyA 315 :YREAVKR T0547 527 :H 1vkyA 323 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=105298 # 1uocA.519.202 read from T0547.t06.many.frag # found chain 1uocA in template set T0547 519 :YQEVLGMKH 1uocA 203 :VYKIIQEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105299 # 1llfA.519.521 read from T0547.t06.many.frag # found chain 1llfA in training set Warning: unaligning (T0547)V522 because of BadResidue code BAD_PEPTIDE in next template residue (1llfA)M526 Warning: unaligning (T0547)L523 because of BadResidue code BAD_PEPTIDE at template residue (1llfA)M526 T0547 519 :YQE 1llfA 522 :YDA T0547 524 :GMKH 1llfA 527 :TNPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=105301 # 1sqwA.519.103 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)M525 (1sqwA)G110 because T (delta_L) conformation "forbidden" or filtered. T0547 519 :YQEVLG 1sqwA 104 :EQSFLY T0547 526 :KH 1sqwA 111 :NH Number of specific fragments extracted= 2 number of extra gaps= 1 total=105303 # 1usyA.519.134 read from T0547.t06.many.frag # found chain 1usyA in template set T0547 519 :YQEVLGMKH 1usyA 135 :YEDLLKEIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105304 # 1j3aA.519.133 read from T0547.t06.many.frag # found chain 1j3aA in training set Warning: unaligning (T0547)M525 (1j3aA)G140 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 because last residue in template chain is (1j3aA)F142 T0547 519 :YQEVLG 1j3aA 134 :VAKFLG T0547 526 :K 1j3aA 141 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=105306 # 1jmuB.520.558 read from T0547.t06.many.frag # found chain 1jmuB in template set T0547 520 :QEVLGMKHN 1jmuB 601 :QAFIGDPST Number of specific fragments extracted= 1 number of extra gaps= 0 total=105307 # 1yt8A.520.450 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 520 :QEVLGMKHN 1yt8A 451 :QALSGKPVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=105308 # 2amdA.520.214 read from T0547.t06.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)G524 (2amdA)N214 because G (3-10) conformation "forbidden" or filtered. T0547 520 :QEVL 2amdA 210 :AAVI T0547 525 :MKHN 2amdA 215 :GDRW Number of specific fragments extracted= 2 number of extra gaps= 1 total=105310 # 1bu6O.520.312 read from T0547.t06.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)N528 (1bu6O)K321 because L (left) conformation "forbidden" or filtered. T0547 520 :QEVLGMKH 1bu6O 313 :IQWLRDEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=105311 # 1dmhA.520.208 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)H527 (1dmhA)G216 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1dmhA)R217 because E (beta_S) conformation "forbidden" or filtered. T0547 520 :QEVLGMK 1dmhA 209 :QQLLNQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=105312 # 2a14A.520.176 read from T0547.t06.many.frag # found chain 2a14A in training set T0547 520 :QEVLGMKHN 2a14A 177 :RAALCNLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=105313 # 1xmxA.520.262 read from T0547.t06.many.frag # found chain 1xmxA in template set Warning: unaligning (T0547)K526 (1xmxA)M267 because D (zeta) conformation "forbidden" or filtered. T0547 520 :QEVLGM 1xmxA 261 :KQIQDD T0547 527 :HN 1xmxA 268 :PT Number of specific fragments extracted= 2 number of extra gaps= 1 total=105315 # 1r6fA.520.214 read from T0547.t06.many.frag # found chain 1r6fA in template set Warning: unaligning (T0547)G524 (1r6fA)G241 because G (3-10) conformation "forbidden" or filtered. T0547 520 :QEVL 1r6fA 237 :KDFL T0547 525 :MKHN 1r6fA 242 :SENK Number of specific fragments extracted= 2 number of extra gaps= 1 total=105317 # 1lam.520.364 read from T0547.t06.many.frag # found chain 1lam in training set Warning: unaligning (T0547)G524 (1lam)G369 because S (epsilon) conformation "forbidden" or filtered. T0547 520 :QEVL 1lam 365 :DIAL T0547 525 :MKHN 1lam 370 :SGAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=105319 # 1omzA.520.216 read from T0547.t06.many.frag # found chain 1omzA in template set Warning: unaligning (T0547)N528 (1omzA)G262 because Y (epsilon') conformation "forbidden" or filtered. T0547 520 :QEVLGMKH 1omzA 254 :TRHTGKPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=105320 # 1wddA.520.390 read from T0547.t06.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)G524 (1wddA)G395 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1wddA)S398 because Y (epsilon') conformation "forbidden" or filtered. T0547 520 :QEVL 1wddA 391 :TEIF T0547 525 :MK 1wddA 396 :DD T0547 528 :N 1wddA 399 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=105323 # 1n62A.520.90 read from T0547.t06.many.frag # found chain 1n62A in training set T0547 520 :QEVLGMKHN 1n62A 91 :QEGFRMMHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=105324 # 2cx1A.520.102 read from T0547.t06.many.frag # found chain 2cx1A in training set Warning: unaligning (T0547)H527 (2cx1A)H109 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (2cx1A)L110 because P (beta_P) conformation "forbidden" or filtered. T0547 520 :QEVLGMK 2cx1A 102 :IALAKGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=105325 # 1l8bA.520.107 read from T0547.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)M525 (1l8bA)E140 because L (left) conformation "forbidden" or filtered. T0547 520 :QEVLG 1l8bA 135 :LCLIG T0547 526 :KHN 1l8bA 141 :SFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=105327 # 1z6nA.520.96 read from T0547.t06.many.frag # found chain 1z6nA in training set T0547 520 :QEVLGMKHN 1z6nA 97 :EDDLRQRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105328 # 1zupA.520.262 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 520 :QEVLGMKHN 1zupA 251 :DDLAKTLPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=105329 # 1zkoA.520.40 read from T0547.t06.many.frag # found chain 1zkoA in training set Warning: unaligning (T0547)N528 (1zkoA)Y37 because E (beta_S) conformation "forbidden" or filtered. T0547 520 :QEVLGMKH 1zkoA 29 :QEQLGDVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=105330 # 2cxaA.520.191 read from T0547.t06.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)K526 (2cxaA)G181 because T (delta_L) conformation "forbidden" or filtered. T0547 520 :QEVLGM 2cxaA 175 :EEFIGH T0547 527 :HN 2cxaA 182 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=105332 # 1tl9A.520.170 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 520 :QEVLG 1tl9A 196 :AKVNG T0547 526 :KHN 1tl9A 202 :YEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=105334 # 1tn6A.520.319 read from T0547.t06.many.frag # found chain 1tn6A in template set T0547 520 :QEVLGMKHN 1tn6A 320 :EDMLENQCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=105335 # 2cz1B.520.163 read from T0547.t06.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. T0547 520 :QEVLGM 2cz1B 164 :PDAIGH T0547 527 :HN 2cz1B 171 :RN Number of specific fragments extracted= 2 number of extra gaps= 1 total=105337 # 1vkyA.520.327 read from T0547.t06.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)N528 (1vkyA)R324 because P (beta_P) conformation "forbidden" or filtered. T0547 520 :QEVLGMKH 1vkyA 316 :REAVKRRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=105338 # 1dxrC.520.236 read from T0547.t06.many.frag # found chain 1dxrC in template set Warning: unaligning (T0547)M525 (1dxrC)T242 because Y (epsilon') conformation "forbidden" or filtered. T0547 520 :QEVLG 1dxrC 237 :SDSLG T0547 526 :KHN 1dxrC 243 :NCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=105340 2czcA expands to /projects/compbio/data/pdb/2czc.pdb.gz 2czcA:# 2czcA.520.259 read from T0547.t06.many.frag # adding 2czcA to template set # found chain 2czcA in template set Warning: unaligning (T0547)H527 (2czcA)H267 because L (left) conformation "forbidden" or filtered. T0547 520 :QEVLGMK 2czcA 260 :IEFARDL T0547 528 :N 2czcA 268 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=105342 # 2bg1A.520.323 read from T0547.t06.many.frag # found chain 2bg1A in template set T0547 520 :QEVLGMKHN 2bg1A 621 :REVLSSRVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105343 # 1uocA.520.203 read from T0547.t06.many.frag # found chain 1uocA in template set Warning: unaligning (T0547)G524 (1uocA)Q208 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1uocA)Q226 T0547 520 :QEVL 1uocA 204 :YKII T0547 525 :MKH 1uocA 209 :EFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=105345 # 1sqwA.520.104 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)N528 (1sqwA)V113 because P (beta_P) conformation "forbidden" or filtered. T0547 520 :QEVLGMKH 1sqwA 105 :QSFLYGNH Number of specific fragments extracted= 1 number of extra gaps= 1 total=105346 # 1s4bP.520.358 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 520 :QEVLGMKHN 1s4bP 374 :QELLGLAFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=105347 # 1llfA.520.522 read from T0547.t06.many.frag # found chain 1llfA in training set Warning: unaligning (T0547)V522 because of BadResidue code BAD_PEPTIDE in next template residue (1llfA)M526 Warning: unaligning (T0547)L523 because of BadResidue code BAD_PEPTIDE at template residue (1llfA)M526 T0547 520 :QE 1llfA 523 :DA T0547 524 :GMKHN 1llfA 527 :TNPSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=105349 # 1zy7A.520.338 read from T0547.t06.many.frag # found chain 1zy7A in training set T0547 520 :QEVLGMKHN 1zy7A 637 :MRVHGKVPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=105350 # 1jmuB.521.559 read from T0547.t06.many.frag # found chain 1jmuB in template set T0547 521 :EVLGMKHNL 1jmuB 602 :AFIGDPSTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105351 # 2a14A.521.177 read from T0547.t06.many.frag # found chain 2a14A in training set T0547 521 :EVLGMKHNL 2a14A 178 :AALCNLASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105352 # 1bu6O.521.313 read from T0547.t06.many.frag # found chain 1bu6O in template set T0547 521 :EVLGMKHNL 1bu6O 314 :QWLRDEMKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105353 # 1dmhA.521.209 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)H527 (1dmhA)G216 because L (left) conformation "forbidden" or filtered. T0547 521 :EVLGMK 1dmhA 210 :QLLNQL T0547 528 :NL 1dmhA 217 :RH Number of specific fragments extracted= 2 number of extra gaps= 1 total=105355 # 1n62A.521.91 read from T0547.t06.many.frag # found chain 1n62A in training set Warning: unaligning (T0547)K526 (1n62A)M97 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVLGM 1n62A 92 :EGFRM T0547 527 :HNL 1n62A 98 :HGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105357 # 1zupA.521.263 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 521 :EVLGMKHNL 1zupA 252 :DLAKTLPHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105358 # 1yt8A.521.451 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 521 :EVLGMKHNL 1yt8A 452 :ALSGKPVFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105359 # 1omzA.521.217 read from T0547.t06.many.frag # found chain 1omzA in template set Warning: unaligning (T0547)N528 (1omzA)G262 because Y (epsilon') conformation "forbidden" or filtered. T0547 521 :EVLGMKH 1omzA 255 :RHTGKPS T0547 529 :L 1omzA 263 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=105361 # 1xmxA.521.263 read from T0547.t06.many.frag # found chain 1xmxA in template set T0547 521 :EVLGMKHNL 1xmxA 262 :QIQDDMPTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105362 # 2amdA.521.215 read from T0547.t06.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)M525 (2amdA)G215 because T (delta_L) conformation "forbidden" or filtered. T0547 521 :EVLG 2amdA 211 :AVIN T0547 526 :KHNL 2amdA 216 :DRWF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105364 # 2cxaA.521.192 read from T0547.t06.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)G524 (2cxaA)G179 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (2cxaA)G181 because T (delta_L) conformation "forbidden" or filtered. T0547 521 :EVL 2cxaA 176 :EFI T0547 525 :M 2cxaA 180 :H T0547 527 :HNL 2cxaA 182 :GKL Number of specific fragments extracted= 3 number of extra gaps= 2 total=105367 # 1r6fA.521.215 read from T0547.t06.many.frag # found chain 1r6fA in template set Warning: unaligning (T0547)G524 (1r6fA)G241 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVL 1r6fA 238 :DFL T0547 525 :MKHNL 1r6fA 242 :SENKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=105369 # 1tl9A.521.171 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 521 :EVLG 1tl9A 197 :KVNG T0547 526 :KHNL 1tl9A 202 :YEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105371 # 1l8bA.521.108 read from T0547.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)G524 (1l8bA)G139 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (1l8bA)E140 because L (left) conformation "forbidden" or filtered. T0547 521 :EVL 1l8bA 136 :CLI T0547 526 :KHNL 1l8bA 141 :SFDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=105373 # 1wddA.521.391 read from T0547.t06.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)H527 (1wddA)S398 because Y (epsilon') conformation "forbidden" or filtered. T0547 521 :EVLGMK 1wddA 392 :EIFGDD T0547 528 :NL 1wddA 399 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105375 # 1lam.521.365 read from T0547.t06.many.frag # found chain 1lam in training set T0547 521 :EVLGMKHNL 1lam 366 :IALGSGATG Number of specific fragments extracted= 1 number of extra gaps= 0 total=105376 # 1ud9A.521.198 read from T0547.t06.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)K526 (1ud9A)I204 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVLGM 1ud9A 199 :EYLND T0547 527 :HNL 1ud9A 205 :ISL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105378 # 2cx1A.521.103 read from T0547.t06.many.frag # found chain 2cx1A in training set Warning: unaligning (T0547)G524 (2cx1A)K106 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVL 2cx1A 103 :ALA T0547 525 :MKHNL 2cx1A 107 :GAHLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=105380 # 1w6sA.521.559 read from T0547.t06.many.frag # found chain 1w6sA in training set T0547 521 :EVLGMKHNL 1w6sA 560 :GAFKKLANY Number of specific fragments extracted= 1 number of extra gaps= 0 total=105381 # 1vkyA.521.328 read from T0547.t06.many.frag # found chain 1vkyA in template set T0547 521 :EVLGMKHNL 1vkyA 317 :EAVKRRYRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=105382 # 2czcA.521.260 read from T0547.t06.many.frag # found chain 2czcA in template set Warning: unaligning (T0547)H527 (2czcA)H267 because L (left) conformation "forbidden" or filtered. T0547 521 :EVLGMK 2czcA 261 :EFARDL T0547 528 :NL 2czcA 268 :RE Number of specific fragments extracted= 2 number of extra gaps= 1 total=105384 # 2cb5A.521.359 read from T0547.t06.many.frag # found chain 2cb5A in template set Warning: unaligning (T0547)L529 (2cb5A)L369 because Y (epsilon') conformation "forbidden" or filtered. T0547 521 :EVLGMKHN 2cb5A 361 :ERLTFGES Number of specific fragments extracted= 1 number of extra gaps= 1 total=105385 # 2cz1B.521.164 read from T0547.t06.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)M525 (2cz1B)H169 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. T0547 521 :EVLG 2cz1B 165 :DAIG T0547 527 :HNL 2cz1B 171 :RND Number of specific fragments extracted= 2 number of extra gaps= 1 total=105387 # 1z6nA.521.97 read from T0547.t06.many.frag # found chain 1z6nA in training set Warning: unaligning (T0547)H527 (1z6nA)L104 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVLGMK 1z6nA 98 :DDLRQR T0547 528 :NL 1z6nA 105 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105389 # 1rdqE.521.229 read from T0547.t06.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)M525 (1rdqE)G234 because T (delta_L) conformation "forbidden" or filtered. T0547 521 :EVLG 1rdqE 230 :EMAA T0547 526 :KHNL 1rdqE 235 :YPPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105391 # 1zy7A.521.339 read from T0547.t06.many.frag # found chain 1zy7A in training set T0547 521 :EVLGMKHNL 1zy7A 638 :RVHGKVPSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=105392 # 1zkoA.521.41 read from T0547.t06.many.frag # found chain 1zkoA in training set T0547 521 :EVLGMKHNL 1zkoA 30 :EQLGDVVYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105393 # 1uzxA.521.154 read from T0547.t06.many.frag # found chain 1uzxA in template set Warning: unaligning (T0547)G524 (1uzxA)S150 because G (3-10) conformation "forbidden" or filtered. T0547 521 :EVL 1uzxA 147 :ELM T0547 525 :MKHNL 1uzxA 151 :LLHEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=105395 # 1sqwA.521.105 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)G524 (1sqwA)Y109 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (1sqwA)N111 because P (beta_P) conformation "forbidden" or filtered. T0547 521 :EVL 1sqwA 106 :SFL T0547 525 :M 1sqwA 110 :G T0547 527 :HNL 1sqwA 112 :HVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=105398 # 1yleA.521.225 read from T0547.t06.many.frag # found chain 1yleA in training set T0547 521 :EVLGMKHNL 1yleA 224 :ESMGQVHPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=105399 # 2a14A.522.178 read from T0547.t06.many.frag # found chain 2a14A in training set T0547 522 :VLGMKHNLF 2a14A 179 :ALCNLASLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105400 # 1jmuB.522.560 read from T0547.t06.many.frag # found chain 1jmuB in template set T0547 522 :VLGMKHNLF 1jmuB 603 :FIGDPSTII Number of specific fragments extracted= 1 number of extra gaps= 0 total=105401 # 1zupA.522.264 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 T0547 522 :VLGMKHNL 1zupA 253 :LAKTLPHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=105402 # 1n62A.522.92 read from T0547.t06.many.frag # found chain 1n62A in training set T0547 522 :VLGMKHNLF 1n62A 93 :GFRMMHGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=105403 # 1omzA.522.218 read from T0547.t06.many.frag # found chain 1omzA in template set Warning: unaligning (T0547)N528 (1omzA)G262 because Y (epsilon') conformation "forbidden" or filtered. T0547 522 :VLGMKH 1omzA 256 :HTGKPS T0547 529 :LF 1omzA 263 :IF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105405 # 1xmxA.522.264 read from T0547.t06.many.frag # found chain 1xmxA in template set T0547 522 :VLGMKHNLF 1xmxA 263 :IQDDMPTIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=105406 # 1bu6O.522.314 read from T0547.t06.many.frag # found chain 1bu6O in template set Warning: unaligning (T0547)H527 (1bu6O)M320 because G (3-10) conformation "forbidden" or filtered. T0547 522 :VLGMK 1bu6O 315 :WLRDE T0547 528 :NLF 1bu6O 321 :KLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=105408 # 1dmhA.522.210 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)H527 (1dmhA)G216 because L (left) conformation "forbidden" or filtered. T0547 522 :VLGMK 1dmhA 211 :LLNQL T0547 528 :NLF 1dmhA 217 :RHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=105410 # 1vkyA.522.329 read from T0547.t06.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)M525 (1vkyA)R321 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (1vkyA)R322 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE in next template residue (1vkyA)S327 T0547 522 :VLG 1vkyA 318 :AVK T0547 527 :HNL 1vkyA 323 :YRF Number of specific fragments extracted= 2 number of extra gaps= 2 total=105412 # 1ud9A.522.199 read from T0547.t06.many.frag # found chain 1ud9A in training set T0547 522 :VLGMKHNLF 1ud9A 200 :YLNDIISLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105413 # 2czcA.522.261 read from T0547.t06.many.frag # found chain 2czcA in template set Warning: unaligning (T0547)H527 (2czcA)H267 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 (2czcA)W270 because L (left) conformation "forbidden" or filtered. T0547 522 :VLGMK 2czcA 262 :FARDL T0547 528 :NL 2czcA 268 :RE Number of specific fragments extracted= 2 number of extra gaps= 2 total=105415 # 1w6sA.522.560 read from T0547.t06.many.frag # found chain 1w6sA in training set T0547 522 :VLGMKHNLF 1w6sA 561 :AFKKLANYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105416 # 1yt8A.522.452 read from T0547.t06.many.frag # found chain 1yt8A in template set T0547 522 :VLGMKHNLF 1yt8A 453 :LSGKPVFLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105417 # 2cb5A.522.360 read from T0547.t06.many.frag # found chain 2cb5A in template set Warning: unaligning (T0547)K526 (2cb5A)G366 because T (delta_L) conformation "forbidden" or filtered. T0547 522 :VLGM 2cb5A 362 :RLTF T0547 527 :HNLF 2cb5A 367 :ESLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=105419 # 2cz1B.522.165 read from T0547.t06.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. T0547 522 :VLGM 2cz1B 166 :AIGH T0547 527 :HNLF 2cz1B 171 :RNDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=105421 # 1tl9A.522.172 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 522 :VLG 1tl9A 198 :VNG T0547 526 :KHNLF 1tl9A 202 :YEALS Number of specific fragments extracted= 2 number of extra gaps= 1 total=105423 # 1v8yA.522.81 read from T0547.t06.many.frag # found chain 1v8yA in training set T0547 522 :VLGMKHNLF 1v8yA 82 :ELAEQTGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=105424 # 1l8bA.522.109 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 522 :VLGMKHNLF 1l8bA 137 :LIGESFDDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=105425 # 1ouoA.522.93 read from T0547.t06.many.frag # found chain 1ouoA in template set Warning: unaligning (T0547)G524 (1ouoA)A114 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (1ouoA)D115 because P (beta_P) conformation "forbidden" or filtered. T0547 522 :VL 1ouoA 112 :ME T0547 526 :KHNLF 1ouoA 116 :LHNLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=105427 # 1wddA.522.392 read from T0547.t06.many.frag # found chain 1wddA in training set Warning: unaligning (T0547)H527 (1wddA)S398 because Y (epsilon') conformation "forbidden" or filtered. T0547 522 :VLGMK 1wddA 393 :IFGDD T0547 528 :NLF 1wddA 399 :VLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=105429 # 1z6nA.522.98 read from T0547.t06.many.frag # found chain 1z6nA in training set Warning: unaligning (T0547)V522 (1z6nA)D99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1z6nA)A105 because L (left) conformation "forbidden" or filtered. T0547 523 :LGMKH 1z6nA 100 :LRQRL T0547 529 :LF 1z6nA 106 :LE Number of specific fragments extracted= 2 number of extra gaps= 2 total=105431 # 2cx1A.522.104 read from T0547.t06.many.frag # found chain 2cx1A in training set Warning: unaligning (T0547)G524 (2cx1A)K106 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (2cx1A)G107 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (2cx1A)A108 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (2cx1A)L110 because P (beta_P) conformation "forbidden" or filtered. T0547 522 :VL 2cx1A 104 :LA T0547 527 :H 2cx1A 109 :H T0547 529 :LF 2cx1A 111 :MI Number of specific fragments extracted= 3 number of extra gaps= 2 total=105434 # 1lam.522.366 read from T0547.t06.many.frag # found chain 1lam in training set Warning: unaligning (T0547)H527 (1lam)A372 because Y (epsilon') conformation "forbidden" or filtered. T0547 522 :VLGMK 1lam 367 :ALGSG T0547 528 :NLF 1lam 373 :TGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105436 # 1t0tV.522.126 read from T0547.t06.many.frag # found chain 1t0tV in training set T0547 522 :VLGMKHNLF 1t0tV 127 :VRRRLYPIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105437 # 2amdA.522.216 read from T0547.t06.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)G524 (2amdA)N214 because G (3-10) conformation "forbidden" or filtered. T0547 522 :VL 2amdA 212 :VI T0547 525 :MKHNLF 2amdA 215 :GDRWFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105439 # 1wlfA.522.126 read from T0547.t06.many.frag # found chain 1wlfA in template set T0547 522 :VLGMKHNLF 1wlfA 129 :HLLDQIRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105440 # 1v4aA.522.335 read from T0547.t06.many.frag # found chain 1v4aA in template set T0547 522 :VLGMKHNLF 1v4aA 336 :IRGGREPSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105441 # 1sqwA.522.106 read from T0547.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0547)G524 (1sqwA)Y109 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (1sqwA)G110 because T (delta_L) conformation "forbidden" or filtered. T0547 522 :VL 1sqwA 107 :FL T0547 526 :KHNLF 1sqwA 111 :NHVLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=105443 # 2cxaA.522.193 read from T0547.t06.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)N528 (2cxaA)K183 because G (3-10) conformation "forbidden" or filtered. T0547 522 :VLGMKH 2cxaA 177 :FIGHGG T0547 529 :LF 2cxaA 184 :LI Number of specific fragments extracted= 2 number of extra gaps= 1 total=105445 # 1ah7.522.182 read from T0547.t06.many.frag # found chain 1ah7 in training set T0547 522 :VLGMKHNLF 1ah7 183 :AKQDYSGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105446 # 2a14A.523.179 read from T0547.t06.many.frag # found chain 2a14A in training set T0547 523 :LGMKHNLFT 2a14A 180 :LCNLASLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105447 # 1zupA.523.265 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)A262 T0547 523 :LGMKHNL 1zupA 254 :AKTLPHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=105448 # 1jmuB.523.561 read from T0547.t06.many.frag # found chain 1jmuB in template set T0547 523 :LGMKHNLFT 1jmuB 604 :IGDPSTIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105449 # 1ud9A.523.200 read from T0547.t06.many.frag # found chain 1ud9A in training set T0547 523 :LGMKHNLFT 1ud9A 201 :LNDIISLTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105450 # 1n62A.523.93 read from T0547.t06.many.frag # found chain 1n62A in training set Warning: unaligning (T0547)H527 (1n62A)H98 because L (left) conformation "forbidden" or filtered. T0547 523 :LGMK 1n62A 94 :FRMM T0547 528 :NLFT 1n62A 99 :GLQC Number of specific fragments extracted= 2 number of extra gaps= 1 total=105452 # 1omzA.523.219 read from T0547.t06.many.frag # found chain 1omzA in template set Warning: unaligning (T0547)N528 (1omzA)G262 because Y (epsilon') conformation "forbidden" or filtered. T0547 523 :LGMKH 1omzA 257 :TGKPS T0547 529 :LFT 1omzA 263 :IFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105454 # 1v8yA.523.82 read from T0547.t06.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)T531 (1v8yA)G91 because Y (epsilon') conformation "forbidden" or filtered. T0547 523 :LGMKHNLF 1v8yA 83 :LAEQTGLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=105455 # 1xmxA.523.265 read from T0547.t06.many.frag # found chain 1xmxA in template set T0547 523 :LGMKHNLFT 1xmxA 264 :QDDMPTIQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=105456 # 2czcA.523.262 read from T0547.t06.many.frag # found chain 2czcA in template set Warning: unaligning (T0547)H527 (2czcA)H267 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 (2czcA)W270 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (2czcA)N271 because L (left) conformation "forbidden" or filtered. T0547 523 :LGMK 2czcA 263 :ARDL T0547 528 :NL 2czcA 268 :RE Number of specific fragments extracted= 2 number of extra gaps= 2 total=105458 # 1bu6O.523.315 read from T0547.t06.many.frag # found chain 1bu6O in template set T0547 523 :LGMKHNLFT 1bu6O 316 :LRDEMKLIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=105459 # 1t0tV.523.127 read from T0547.t06.many.frag # found chain 1t0tV in training set T0547 523 :LGMKHNLFT 1t0tV 128 :RRRLYPILP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105460 # 1vkyA.523.330 read from T0547.t06.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)N528 (1vkyA)R324 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE in next template residue (1vkyA)S327 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE at template residue (1vkyA)S327 T0547 523 :LGMKH 1vkyA 319 :VKRRY T0547 529 :L 1vkyA 325 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=105462 # 1w6sA.523.561 read from T0547.t06.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)N528 (1w6sA)N567 because G (3-10) conformation "forbidden" or filtered. T0547 523 :LGMKH 1w6sA 562 :FKKLA T0547 529 :LFT 1w6sA 568 :YTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=105464 # 2cb5A.523.361 read from T0547.t06.many.frag # found chain 2cb5A in template set Warning: unaligning (T0547)K526 (2cb5A)G366 because T (delta_L) conformation "forbidden" or filtered. T0547 523 :LGM 2cb5A 363 :LTF T0547 527 :HNLFT 2cb5A 367 :ESLMT Number of specific fragments extracted= 2 number of extra gaps= 1 total=105466 # 1ouoA.523.94 read from T0547.t06.many.frag # found chain 1ouoA in template set Warning: unaligning (T0547)H527 (1ouoA)H117 because H (helix) conformation "forbidden" or filtered. T0547 523 :LGMK 1ouoA 113 :EADL T0547 528 :NLFT 1ouoA 118 :NLTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=105468 # 1wlfA.523.127 read from T0547.t06.many.frag # found chain 1wlfA in template set T0547 523 :LGMKHNLFT 1wlfA 130 :LLDQIRIVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=105469 # 2cz1B.523.166 read from T0547.t06.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (2cz1B)N172 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (2cz1B)G175 because S (epsilon) conformation "forbidden" or filtered. T0547 523 :LGM 2cz1B 167 :IGH T0547 527 :H 2cz1B 171 :R T0547 529 :LF 2cz1B 173 :DA Number of specific fragments extracted= 3 number of extra gaps= 3 total=105472 # 1dmhA.523.211 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)H527 (1dmhA)G216 because L (left) conformation "forbidden" or filtered. T0547 523 :LGMK 1dmhA 212 :LNQL T0547 528 :NLFT 1dmhA 217 :RHGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=105474 # 1i7nA.523.245 read from T0547.t06.many.frag # found chain 1i7nA in template set Warning: unaligning (T0547)N528 (1i7nA)E363 because G (3-10) conformation "forbidden" or filtered. T0547 523 :LGMKH 1i7nA 358 :VDACS T0547 529 :LFT 1i7nA 364 :MFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=105476 # 1n12A.523.115 read from T0547.t06.many.frag # found chain 1n12A in template set T0547 523 :LGMKHNLFT 1n12A 127 :KGNMQNLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105477 # 1tl9A.523.173 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0547 523 :LG 1tl9A 199 :NG T0547 526 :KHNLFT 1tl9A 202 :YEALSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=105479 # 2cxaA.523.194 read from T0547.t06.many.frag # found chain 2cxaA in training set Warning: unaligning (T0547)N528 (2cxaA)K183 because G (3-10) conformation "forbidden" or filtered. T0547 523 :LGMKH 2cxaA 178 :IGHGG T0547 529 :LFT 2cxaA 184 :LID Number of specific fragments extracted= 2 number of extra gaps= 1 total=105481 # 1p42A.523.230 read from T0547.t06.many.frag # found chain 1p42A in template set Warning: unaligning (T0547)F530 (1p42A)G251 because T (delta_L) conformation "forbidden" or filtered. T0547 523 :LGMKHNL 1p42A 244 :IGDLYLL T0547 531 :T 1p42A 252 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=105483 # 1vpsA.523.261 read from T0547.t06.many.frag # found chain 1vpsA in template set Warning: unaligning (T0547)L523 (1vpsA)N293 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)M525 (1vpsA)D295 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (1vpsA)V296 because P (beta_P) conformation "forbidden" or filtered. T0547 524 :G 1vpsA 294 :Y T0547 527 :HNLFT 1vpsA 297 :HHWRG Number of specific fragments extracted= 2 number of extra gaps= 2 total=105485 # 1ah7.523.183 read from T0547.t06.many.frag # found chain 1ah7 in training set Warning: unaligning (T0547)T531 (1ah7)N192 because Y (epsilon') conformation "forbidden" or filtered. T0547 523 :LGMKHNLF 1ah7 184 :KQDYSGIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=105486 # 1llfA.523.525 read from T0547.t06.many.frag # found chain 1llfA in training set Warning: unaligning (T0547)L523 because of BadResidue code BAD_PEPTIDE at template residue (1llfA)M526 Warning: unaligning (T0547)T531 because last residue in template chain is (1llfA)V534 T0547 524 :GMKHNLF 1llfA 527 :TNPSSFF Number of specific fragments extracted= 1 number of extra gaps= 1 total=105487 # 1l8bA.523.110 read from T0547.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)M525 (1l8bA)E140 because L (left) conformation "forbidden" or filtered. T0547 523 :LG 1l8bA 138 :IG T0547 526 :KHNLFT 1l8bA 141 :SFDDYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=105489 # 1z6nA.523.99 read from T0547.t06.many.frag # found chain 1z6nA in training set Warning: unaligning (T0547)N528 (1z6nA)A105 because L (left) conformation "forbidden" or filtered. T0547 523 :LGMKH 1z6nA 100 :LRQRL T0547 529 :LFT 1z6nA 106 :LER Number of specific fragments extracted= 2 number of extra gaps= 1 total=105491 # 2amdA.523.217 read from T0547.t06.many.frag # found chain 2amdA in template set Warning: unaligning (T0547)T531 (2amdA)N221 because Y (epsilon') conformation "forbidden" or filtered. T0547 523 :LGMKHNLF 2amdA 213 :INGDRWFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=105492 # 1mun.523.144 read from T0547.t06.many.frag # found chain 1mun in training set T0547 523 :LGMKHNLFT 1mun 145 :LARCYAVSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=105493 # 2a14A.524.180 read from T0547.t06.many.frag # found chain 2a14A in training set T0547 524 :GMKHNLFTH 2a14A 181 :CNLASLLKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105494 # 1v8yA.524.83 read from T0547.t06.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)N528 (1v8yA)G88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1v8yA)G91 because Y (epsilon') conformation "forbidden" or filtered. T0547 524 :GMKH 1v8yA 84 :AEQT T0547 529 :LF 1v8yA 89 :LS T0547 532 :H 1v8yA 92 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=105497 # 1zupA.524.266 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)A262 T0547 524 :GMKHNL 1zupA 255 :KTLPHL T0547 532 :H 1zupA 263 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=105499 # 1ud9A.524.201 read from T0547.t06.many.frag # found chain 1ud9A in training set T0547 524 :GMKHNLFTH 1ud9A 202 :NDIISLTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105500 # 1n62A.524.94 read from T0547.t06.many.frag # found chain 1n62A in training set Warning: unaligning (T0547)H527 (1n62A)H98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1n62A)G103 because T (delta_L) conformation "forbidden" or filtered. T0547 524 :GMK 1n62A 95 :RMM T0547 528 :NLFT 1n62A 99 :GLQC Number of specific fragments extracted= 2 number of extra gaps= 2 total=105502 # 1t0tV.524.128 read from T0547.t06.many.frag # found chain 1t0tV in training set T0547 524 :GMKHNLFTH 1t0tV 129 :RRLYPILPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105503 # 1vkyA.524.331 read from T0547.t06.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)K526 (1vkyA)R322 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1vkyA)R324 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE in next template residue (1vkyA)S327 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE at template residue (1vkyA)S327 T0547 524 :GM 1vkyA 320 :KR T0547 527 :H 1vkyA 323 :Y T0547 529 :L 1vkyA 325 :F T0547 532 :H 1vkyA 328 :F Number of specific fragments extracted= 4 number of extra gaps= 3 total=105507 # 1w6sA.524.562 read from T0547.t06.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)H532 (1w6sA)M571 because P (beta_P) conformation "forbidden" or filtered. T0547 524 :GMKHNLFT 1w6sA 563 :KKLANYTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=105508 # 2czcA.524.263 read from T0547.t06.many.frag # found chain 2czcA in template set Warning: unaligning (T0547)T531 (2czcA)N271 because L (left) conformation "forbidden" or filtered. T0547 524 :GMKHNLF 2czcA 264 :RDLHREW T0547 532 :H 2czcA 272 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=105510 # 1jmuB.524.562 read from T0547.t06.many.frag # found chain 1jmuB in template set T0547 524 :GMKHNLFTH 1jmuB 605 :GDPSTIITQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=105511 # 2cb5A.524.362 read from T0547.t06.many.frag # found chain 2cb5A in template set Warning: unaligning (T0547)M525 (2cb5A)F365 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (2cb5A)G366 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L529 (2cb5A)L369 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (2cb5A)H372 because E (beta_S) conformation "forbidden" or filtered. T0547 524 :G 2cb5A 364 :T T0547 527 :HN 2cb5A 367 :ES T0547 530 :FT 2cb5A 370 :MT Number of specific fragments extracted= 3 number of extra gaps= 3 total=105514 # 1wlfA.524.128 read from T0547.t06.many.frag # found chain 1wlfA in template set T0547 524 :GMKHNLFTH 1wlfA 131 :LDQIRIVFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105515 # 1omzA.524.220 read from T0547.t06.many.frag # found chain 1omzA in template set T0547 524 :GMKHNLFTH 1omzA 258 :GKPSGIFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105516 # 1ouoA.524.95 read from T0547.t06.many.frag # found chain 1ouoA in template set Warning: unaligning (T0547)G524 (1ouoA)A114 because G (3-10) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 1ouoA 115 :DLHNLTPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=105517 # 2cz1B.524.167 read from T0547.t06.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (2cz1B)G175 because S (epsilon) conformation "forbidden" or filtered. T0547 524 :GM 2cz1B 168 :GH T0547 527 :HNLF 2cz1B 171 :RNDA T0547 532 :H 2cz1B 176 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=105520 # 1n12A.524.116 read from T0547.t06.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)H532 (1n12A)G136 because S (epsilon) conformation "forbidden" or filtered. T0547 524 :GMKHNLFT 1n12A 128 :GNMQNLIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=105521 # 1xmxA.524.266 read from T0547.t06.many.frag # found chain 1xmxA in template set Warning: unaligning (T0547)H532 (1xmxA)R273 because Y (epsilon') conformation "forbidden" or filtered. T0547 524 :GMKHNLFT 1xmxA 265 :DDMPTIQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=105522 # 1i7nA.524.246 read from T0547.t06.many.frag # found chain 1i7nA in template set Warning: unaligning (T0547)H532 (1i7nA)G367 because S (epsilon) conformation "forbidden" or filtered. T0547 524 :GMKHNLFT 1i7nA 359 :DACSEMFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=105523 # 1p42A.524.231 read from T0547.t06.many.frag # found chain 1p42A in template set Warning: unaligning (T0547)F530 (1p42A)G251 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1p42A)S252 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1p42A)P253 because P (beta_P) conformation "forbidden" or filtered. T0547 524 :GMKHNL 1p42A 245 :GDLYLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=105524 # 1sh8A.524.72 read from T0547.t06.many.frag # found chain 1sh8A in training set T0547 524 :GMKHNLFTH 1sh8A 71 :FDSARFYPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105525 # 1vpsA.524.262 read from T0547.t06.many.frag # found chain 1vpsA in template set Warning: unaligning (T0547)K526 (1vpsA)V296 because P (beta_P) conformation "forbidden" or filtered. T0547 524 :GM 1vpsA 294 :YD T0547 527 :HNLFTH 1vpsA 297 :HHWRGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105527 # 1twfC.524.163 read from T0547.t06.many.frag # found chain 1twfC in template set T0547 524 :GMKHNLFTH 1twfC 164 :AKEHAKWGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105528 # 1dmhA.524.212 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)H527 (1dmhA)G216 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1dmhA)R217 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 (1dmhA)G219 because G (3-10) conformation "forbidden" or filtered. T0547 524 :GMK 1dmhA 213 :NQL T0547 529 :L 1dmhA 218 :H T0547 531 :TH 1dmhA 220 :NR Number of specific fragments extracted= 3 number of extra gaps= 2 total=105531 # 1ewnA.524.64 read from T0547.t06.many.frag # found chain 1ewnA in template set T0547 524 :GMKHNLFTH 1ewnA 144 :PRNRGMFMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105532 # 2awgA.524.69 read from T0547.t06.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)H532 (2awgA)V165 because P (beta_P) conformation "forbidden" or filtered. T0547 524 :GMKHNLFT 2awgA 157 :DLSVPLMD Number of specific fragments extracted= 1 number of extra gaps= 1 total=105533 # 1bu6O.524.316 read from T0547.t06.many.frag # found chain 1bu6O in template set T0547 524 :GMKHNLFTH 1bu6O 317 :RDEMKLIND Number of specific fragments extracted= 1 number of extra gaps= 0 total=105534 # 1f06A.524.235 read from T0547.t06.many.frag # found chain 1f06A in template set Warning: unaligning (T0547)H527 (1f06A)H239 because G (3-10) conformation "forbidden" or filtered. T0547 524 :GMK 1f06A 236 :DSE T0547 528 :NLFTH 1f06A 240 :TGMPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=105536 # 1tl9A.524.174 read from T0547.t06.many.frag # found chain 1tl9A in template set Warning: unaligning (T0547)M525 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1tl9A)G207 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1tl9A)G208 because Y (epsilon') conformation "forbidden" or filtered. T0547 524 :G 1tl9A 200 :G T0547 526 :KHNLF 1tl9A 202 :YEALS Number of specific fragments extracted= 2 number of extra gaps= 2 total=105538 # 1mun.524.145 read from T0547.t06.many.frag # found chain 1mun in training set Warning: unaligning (T0547)N528 (1mun)A150 because L (left) conformation "forbidden" or filtered. T0547 524 :GMKH 1mun 146 :ARCY T0547 529 :LFTH 1mun 151 :VSGW Number of specific fragments extracted= 2 number of extra gaps= 1 total=105540 # 1kuuA.524.172 read from T0547.t06.many.frag # found chain 1kuuA in template set T0547 524 :GMKHNLFTH 1kuuA 173 :GGEFAAFTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=105541 # 2a14A.525.181 read from T0547.t06.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)H532 (2a14A)P189 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. T0547 525 :MKHNLFT 2a14A 182 :NLASLLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=105542 # 1v8yA.525.84 read from T0547.t06.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)T531 (1v8yA)G91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1v8yA)D92 because P (beta_P) conformation "forbidden" or filtered. T0547 525 :MKHNLF 1v8yA 85 :EQTGLS T0547 533 :P 1v8yA 93 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=105544 # 1t0tV.525.129 read from T0547.t06.many.frag # found chain 1t0tV in training set T0547 525 :MKHNLFTHP 1t0tV 130 :RLYPILPKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105545 # 1zupA.525.267 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)A262 T0547 525 :MKHNL 1zupA 256 :TLPHL T0547 532 :HP 1zupA 263 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105547 # 1vkyA.525.332 read from T0547.t06.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)K526 (1vkyA)R322 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE in next template residue (1vkyA)S327 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE at template residue (1vkyA)S327 T0547 525 :M 1vkyA 321 :R T0547 527 :HNL 1vkyA 323 :YRF T0547 532 :HP 1vkyA 328 :FG Number of specific fragments extracted= 3 number of extra gaps= 2 total=105550 # 1w6sA.525.563 read from T0547.t06.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)P533 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 1w6sA 564 :KLANYTQM Number of specific fragments extracted= 1 number of extra gaps= 1 total=105551 # 1ud9A.525.202 read from T0547.t06.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 1ud9A 203 :DIISLTKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=105552 # 1twfC.525.164 read from T0547.t06.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)F530 (1twfC)W170 because G (3-10) conformation "forbidden" or filtered. T0547 525 :MKHNL 1twfC 165 :KEHAK T0547 531 :THP 1twfC 171 :GPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=105554 # 1n12A.525.117 read from T0547.t06.many.frag # found chain 1n12A in template set T0547 525 :MKHNLFTHP 1n12A 129 :NMQNLIAGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105555 # 1ewnA.525.65 read from T0547.t06.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)F530 (1ewnA)F150 because G (3-10) conformation "forbidden" or filtered. T0547 525 :MKHNL 1ewnA 145 :RNRGM T0547 531 :THP 1ewnA 151 :MKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=105557 # 1kuuA.525.173 read from T0547.t06.many.frag # found chain 1kuuA in template set T0547 525 :MKHNLFTHP 1kuuA 174 :GEFAAFTHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105558 # 2cz1B.525.168 read from T0547.t06.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 525 :M 2cz1B 169 :H T0547 527 :HNLFTH 2cz1B 171 :RNDAGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=105560 # 1i7nA.525.247 read from T0547.t06.many.frag # found chain 1i7nA in template set Warning: unaligning (T0547)H532 (1i7nA)G367 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1i7nA)L368 because E (beta_S) conformation "forbidden" or filtered. T0547 525 :MKHNLFT 1i7nA 360 :ACSEMFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=105561 # 1wlfA.525.129 read from T0547.t06.many.frag # found chain 1wlfA in template set Warning: unaligning (T0547)P533 (1wlfA)K140 because T (delta_L) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 1wlfA 132 :DQIRIVFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=105562 # 2czcA.525.264 read from T0547.t06.many.frag # found chain 2czcA in template set Warning: unaligning (T0547)P533 (2czcA)L273 because D (zeta) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 2czcA 265 :DLHREWNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=105563 # 1sh8A.525.73 read from T0547.t06.many.frag # found chain 1sh8A in training set T0547 525 :MKHNLFTHP 1sh8A 72 :DSARFYPIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105564 # 1n62A.525.95 read from T0547.t06.many.frag # found chain 1n62A in training set Warning: unaligning (T0547)L529 (1n62A)L100 because Y (epsilon') conformation "forbidden" or filtered. T0547 525 :MKHN 1n62A 96 :MMHG T0547 530 :FTHP 1n62A 101 :QCGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=105566 # 1l3kA.525.122 read from T0547.t06.many.frag # found chain 1l3kA in training set T0547 525 :MKHNLFTHP 1l3kA 123 :DYFEQYGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105567 # 1ouoA.525.96 read from T0547.t06.many.frag # found chain 1ouoA in template set T0547 525 :MKHNLFTHP 1ouoA 115 :DLHNLTPAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105568 # 1iuqA.525.275 read from T0547.t06.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)P533 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iuqA)R296 T0547 525 :MKHNLFTH 1iuqA 277 :LCHDIMPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105569 # 1omzA.525.221 read from T0547.t06.many.frag # found chain 1omzA in template set Warning: unaligning (T0547)N528 (1omzA)G262 because Y (epsilon') conformation "forbidden" or filtered. T0547 525 :MKH 1omzA 259 :KPS T0547 529 :LFTHP 1omzA 263 :IFVKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=105571 # 2awgA.525.70 read from T0547.t06.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)P533 (2awgA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 2awgA 158 :LSVPLMDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=105572 # 2cb5A.525.363 read from T0547.t06.many.frag # found chain 2cb5A in template set Warning: unaligning (T0547)M525 (2cb5A)F365 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K526 (2cb5A)G366 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2cb5A)A373 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLFTH 2cb5A 367 :ESLMTH Number of specific fragments extracted= 1 number of extra gaps= 2 total=105573 # 1jmuB.525.563 read from T0547.t06.many.frag # found chain 1jmuB in template set Warning: unaligning (T0547)P533 (1jmuB)A614 because L (left) conformation "forbidden" or filtered. T0547 525 :MKHNLFTH 1jmuB 606 :DPSTIITQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=105574 # 1p42A.525.232 read from T0547.t06.many.frag # found chain 1p42A in template set Warning: unaligning (T0547)T531 (1p42A)S252 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1p42A)V254 because E (beta_S) conformation "forbidden" or filtered. T0547 525 :MKHNLF 1p42A 246 :DLYLLG T0547 532 :H 1p42A 253 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=105576 # 1va6A.525.434 read from T0547.t06.many.frag # found chain 1va6A in template set T0547 525 :MKHNLFTHP 1va6A 435 :ELVACFDNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105577 # 1eerB.525.116 read from T0547.t06.many.frag # found chain 1eerB in template set Warning: unaligning (T0547)K526 (1eerB)E117 because G (3-10) conformation "forbidden" or filtered. T0547 525 :M 1eerB 116 :N T0547 527 :HNLFTHP 1eerB 118 :VVLLDAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=105579 # 1pgs.525.101 read from T0547.t06.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)H532 (1pgs)G109 because S (epsilon) conformation "forbidden" or filtered. T0547 525 :MKHNLFT 1pgs 102 :DFKSLLS T0547 533 :P 1pgs 110 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=105581 # 1vpsA.525.263 read from T0547.t06.many.frag # found chain 1vpsA in template set T0547 525 :MKHNLFTHP 1vpsA 295 :DVHHWRGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105582 # 1wspA.525.30 read from T0547.t06.many.frag # found chain 1wspA in template set T0547 525 :MKHNLFTHP 1wspA 779 :QFKELLTKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105583 # 2a14A.526.182 read from T0547.t06.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 2a14A 183 :LASLLKP T0547 534 :T 2a14A 191 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=105585 # 1t0tV.526.130 read from T0547.t06.many.frag # found chain 1t0tV in training set T0547 526 :KHNLFTHPT 1t0tV 131 :LYPILPKTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=105586 # 1ewnA.526.66 read from T0547.t06.many.frag # found chain 1ewnA in template set T0547 526 :KHNLFTHPT 1ewnA 146 :NRGMFMKPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=105587 # 1v8yA.526.85 read from T0547.t06.many.frag # found chain 1v8yA in training set T0547 526 :KHNLFTHPT 1v8yA 86 :QTGLSGDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105588 # 1twfC.526.165 read from T0547.t06.many.frag # found chain 1twfC in template set T0547 526 :KHNLFTHPT 1twfC 166 :EHAKWGPAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105589 # 1kuuA.526.174 read from T0547.t06.many.frag # found chain 1kuuA in template set T0547 526 :KHNLFTHPT 1kuuA 175 :EFAAFTHPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105590 # 1zupA.526.268 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)A262 Warning: unaligning (T0547)T534 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)N272 T0547 526 :KHNL 1zupA 257 :LPHL T0547 532 :HP 1zupA 263 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105592 # 1w6sA.526.564 read from T0547.t06.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)N528 (1w6sA)N567 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. T0547 526 :KH 1w6sA 565 :LA T0547 529 :LFTH 1w6sA 568 :YTQM T0547 534 :T 1w6sA 573 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=105595 # 1vkyA.526.333 read from T0547.t06.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)K526 (1vkyA)R322 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)H527 (1vkyA)Y323 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE in next template residue (1vkyA)S327 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE at template residue (1vkyA)S327 T0547 528 :NL 1vkyA 324 :RF T0547 532 :HPT 1vkyA 328 :FGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=105597 # 2cz1B.526.169 read from T0547.t06.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)K526 (2cz1B)G170 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLFTH 2cz1B 171 :RNDAGE T0547 534 :T 2cz1B 178 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=105599 # 1eerB.526.117 read from T0547.t06.many.frag # found chain 1eerB in template set Warning: unaligning (T0547)H532 (1eerB)A123 because P (beta_P) conformation "forbidden" or filtered. T0547 526 :KHNLFT 1eerB 117 :EVVLLD T0547 533 :PT 1eerB 124 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105601 # 1l3kA.526.123 read from T0547.t06.many.frag # found chain 1l3kA in training set Warning: unaligning (T0547)H532 (1l3kA)K130 because P (beta_P) conformation "forbidden" or filtered. T0547 526 :KHNLFT 1l3kA 124 :YFEQYG T0547 533 :PT 1l3kA 131 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=105603 # 1ud9A.526.203 read from T0547.t06.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 526 :KHNLFTH 1ud9A 204 :IISLTKL T0547 534 :T 1ud9A 212 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=105605 # 1sh8A.526.74 read from T0547.t06.many.frag # found chain 1sh8A in training set T0547 526 :KHNLFTHPT 1sh8A 73 :SARFYPIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105606 # 1n12A.526.118 read from T0547.t06.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)H532 (1n12A)G136 because S (epsilon) conformation "forbidden" or filtered. T0547 526 :KHNLFT 1n12A 130 :MQNLIA T0547 533 :PT 1n12A 137 :PF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105608 # 1iuqA.526.276 read from T0547.t06.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)P533 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iuqA)R296 T0547 526 :KHNLFTH 1iuqA 278 :CHDIMPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105609 # 1pgs.526.102 read from T0547.t06.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)H532 (1pgs)G109 because S (epsilon) conformation "forbidden" or filtered. T0547 526 :KHNLFT 1pgs 103 :FKSLLS T0547 533 :PT 1pgs 110 :NT Number of specific fragments extracted= 2 number of extra gaps= 1 total=105611 # 2awgA.526.71 read from T0547.t06.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)P533 (2awgA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 2awgA 159 :SVPLMDV T0547 534 :T 2awgA 167 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=105613 # 1wlfA.526.130 read from T0547.t06.many.frag # found chain 1wlfA in template set Warning: unaligning (T0547)P533 (1wlfA)K140 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 1wlfA 133 :QIRIVFP T0547 534 :T 1wlfA 141 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=105615 # 1cxqA.526.60 read from T0547.t06.many.frag # found chain 1cxqA in training set Warning: unaligning (T0547)T531 (1cxqA)G113 because S (epsilon) conformation "forbidden" or filtered. T0547 526 :KHNLF 1cxqA 108 :AIAVL T0547 532 :HPT 1cxqA 114 :RPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=105617 # 1i7nA.526.248 read from T0547.t06.many.frag # found chain 1i7nA in template set Warning: unaligning (T0547)N528 (1i7nA)E363 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 (1i7nA)F365 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1i7nA)G366 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1i7nA)L368 because E (beta_S) conformation "forbidden" or filtered. T0547 526 :KH 1i7nA 361 :CS T0547 529 :L 1i7nA 364 :M T0547 532 :H 1i7nA 367 :G T0547 534 :T 1i7nA 369 :D Number of specific fragments extracted= 4 number of extra gaps= 3 total=105621 # 1o75A.526.220 read from T0547.t06.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)T531 (1o75A)G226 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLF 1o75A 221 :YHSRF T0547 532 :HPT 1o75A 227 :SDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=105623 # 1wspA.526.31 read from T0547.t06.many.frag # found chain 1wspA in template set Warning: unaligning (T0547)T534 (1wspA)G788 because S (epsilon) conformation "forbidden" or filtered. T0547 526 :KHNLFTHP 1wspA 780 :FKELLTKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=105624 # 1vpsA.526.264 read from T0547.t06.many.frag # found chain 1vpsA in template set T0547 526 :KHNLFTHPT 1vpsA 296 :VHHWRGLPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=105625 # 1p1mA.526.360 read from T0547.t06.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)T531 (1p1mA)G366 because T (delta_L) conformation "forbidden" or filtered. T0547 526 :KHNLF 1p1mA 361 :VHAFS T0547 532 :HPT 1p1mA 367 :EVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105627 # 2czcA.526.265 read from T0547.t06.many.frag # found chain 2czcA in template set Warning: unaligning (T0547)P533 (2czcA)L273 because D (zeta) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 2czcA 266 :LHREWNN T0547 534 :T 2czcA 274 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=105629 # 1omzA.526.222 read from T0547.t06.many.frag # found chain 1omzA in template set T0547 526 :KHNLFTHPT 1omzA 260 :PSGIFVKPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105630 # 2cb5A.526.364 read from T0547.t06.many.frag # found chain 2cb5A in template set Warning: unaligning (T0547)K526 (2cb5A)G366 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2cb5A)A373 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLFTH 2cb5A 367 :ESLMTH T0547 534 :T 2cb5A 374 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=105632 # 2nlrA.526.19 read from T0547.t06.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)P533 (2nlrA)T27 because G (3-10) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 2nlrA 20 :QNNRWGS T0547 534 :T 2nlrA 28 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=105634 # 1j98A.526.66 read from T0547.t06.many.frag # found chain 1j98A in training set Warning: unaligning (T0547)P533 (1j98A)F74 because E (beta_S) conformation "forbidden" or filtered. T0547 526 :KHNLFTH 1j98A 67 :HAEKYDH T0547 534 :T 1j98A 75 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=105636 # 1t0tV.527.131 read from T0547.t06.many.frag # found chain 1t0tV in training set T0547 527 :HNLFTHPTE 1t0tV 132 :YPILPKTNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=105637 # 2a14A.527.183 read from T0547.t06.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :HNLFTH 2a14A 184 :ASLLKP T0547 534 :TE 2a14A 191 :GH Number of specific fragments extracted= 2 number of extra gaps= 1 total=105639 # 1ewnA.527.67 read from T0547.t06.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)T534 (1ewnA)G154 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1ewnA)T155 because P (beta_P) conformation "forbidden" or filtered. T0547 527 :HNLFTHP 1ewnA 147 :RGMFMKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=105640 # 1kuuA.527.175 read from T0547.t06.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)H532 (1kuuA)H181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1kuuA)T184 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :HNLFT 1kuuA 176 :FAAFT T0547 533 :PT 1kuuA 182 :PV Number of specific fragments extracted= 2 number of extra gaps= 2 total=105642 # 1twfC.527.166 read from T0547.t06.many.frag # found chain 1twfC in template set T0547 527 :HNLFTHPTE 1twfC 167 :HAKWGPAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105643 # 1sh8A.527.75 read from T0547.t06.many.frag # found chain 1sh8A in training set T0547 527 :HNLFTHPTE 1sh8A 74 :ARFYPIVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105644 # 1w6sA.527.565 read from T0547.t06.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)N528 (1w6sA)N567 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1w6sA)G574 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :H 1w6sA 566 :A T0547 529 :LFTH 1w6sA 568 :YTQM T0547 534 :T 1w6sA 573 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=105647 # 2cz1B.527.170 read from T0547.t06.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)T531 (2cz1B)G175 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLF 2cz1B 171 :RNDA T0547 532 :H 2cz1B 176 :E T0547 534 :TE 2cz1B 178 :PT Number of specific fragments extracted= 3 number of extra gaps= 2 total=105650 # 1eerB.527.118 read from T0547.t06.many.frag # found chain 1eerB in template set Warning: unaligning (T0547)E535 (1eerB)G126 because L (left) conformation "forbidden" or filtered. T0547 527 :HNLFTHPT 1eerB 118 :VVLLDAPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=105651 # 1pgs.527.103 read from T0547.t06.many.frag # found chain 1pgs in training set T0547 527 :HNLFTHPTE 1pgs 104 :KSLLSGNTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105652 # 1o75A.527.221 read from T0547.t06.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)E535 (1o75A)E230 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLFTHPT 1o75A 222 :HSRFGSDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=105653 # 1wlfA.527.131 read from T0547.t06.many.frag # found chain 1wlfA in template set Warning: unaligning (T0547)N528 (1wlfA)R135 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1wlfA)K140 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :H 1wlfA 134 :I T0547 529 :LFTH 1wlfA 136 :IVFP T0547 534 :TE 1wlfA 141 :AV Number of specific fragments extracted= 3 number of extra gaps= 2 total=105656 # 1l3kA.527.124 read from T0547.t06.many.frag # found chain 1l3kA in training set T0547 527 :HNLFTHPTE 1l3kA 125 :FEQYGKIEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105657 # 1v8yA.527.86 read from T0547.t06.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)N528 (1v8yA)G88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1v8yA)G91 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :H 1v8yA 87 :T T0547 529 :LF 1v8yA 89 :LS T0547 532 :HPTE 1v8yA 92 :DLTY Number of specific fragments extracted= 3 number of extra gaps= 2 total=105660 # 2awgA.527.72 read from T0547.t06.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)H532 (2awgA)V165 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2awgA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :HNLFT 2awgA 160 :VPLMD T0547 534 :TE 2awgA 167 :ET Number of specific fragments extracted= 2 number of extra gaps= 1 total=105662 # 1ud9A.527.204 read from T0547.t06.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :HNLFTH 1ud9A 205 :ISLTKL T0547 534 :TE 1ud9A 212 :DY Number of specific fragments extracted= 2 number of extra gaps= 1 total=105664 # 1vkyA.527.334 read from T0547.t06.many.frag # found chain 1vkyA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE in next template residue (1vkyA)S327 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE at template residue (1vkyA)S327 T0547 527 :HNL 1vkyA 323 :YRF T0547 532 :HPTE 1vkyA 328 :FGDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=105666 # 2nlrA.527.20 read from T0547.t06.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)N528 (2nlrA)N22 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2nlrA)T27 because G (3-10) conformation "forbidden" or filtered. T0547 527 :H 2nlrA 21 :N T0547 529 :LFTH 2nlrA 23 :RWGS T0547 534 :TE 2nlrA 28 :AP Number of specific fragments extracted= 3 number of extra gaps= 2 total=105669 # 1zupA.527.269 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)F530 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)A262 Warning: unaligning (T0547)T531 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1zupA)A262 Warning: unaligning (T0547)H532 (1zupA)D263 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1zupA)N272 T0547 527 :HNL 1zupA 258 :PHL T0547 533 :P 1zupA 264 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=105671 # 1vpsA.527.265 read from T0547.t06.many.frag # found chain 1vpsA in template set T0547 527 :HNLFTHPTE 1vpsA 297 :HHWRGLPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=105672 # 1iuqA.527.277 read from T0547.t06.many.frag # found chain 1iuqA in training set Warning: unaligning (T0547)H527 (1iuqA)H279 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iuqA)R296 T0547 528 :NLFTH 1iuqA 280 :DIMPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=105673 # 1n12A.527.119 read from T0547.t06.many.frag # found chain 1n12A in template set Warning: unaligning (T0547)N528 (1n12A)N132 because G (3-10) conformation "forbidden" or filtered. T0547 527 :H 1n12A 131 :Q T0547 529 :LFTHPTE 1n12A 133 :LIAGPFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=105675 # 1p1mA.527.361 read from T0547.t06.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)H527 (1p1mA)H362 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (1p1mA)G366 because T (delta_L) conformation "forbidden" or filtered. T0547 528 :NLF 1p1mA 363 :AFS T0547 532 :HPTE 1p1mA 367 :EVFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=105677 # 1mbmA.527.173 read from T0547.t06.many.frag # found chain 1mbmA in template set Warning: unaligning (T0547)P533 (1mbmA)V186 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLFTH 1mbmA 180 :DNIIAD T0547 534 :TE 1mbmA 187 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=105679 # 1cxqA.527.61 read from T0547.t06.many.frag # found chain 1cxqA in training set Warning: unaligning (T0547)E535 (1cxqA)A117 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :HNLFTHPT 1cxqA 109 :IAVLGRPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=105680 # 1ia9A.527.85 read from T0547.t06.many.frag # found chain 1ia9A in template set Warning: unaligning (T0547)H527 (1ia9A)H1634 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N528 (1ia9A)D1635 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1ia9A)G1640 because T (delta_L) conformation "forbidden" or filtered. T0547 529 :LFTH 1ia9A 1636 :ILKS T0547 534 :TE 1ia9A 1641 :HL Number of specific fragments extracted= 2 number of extra gaps= 2 total=105682 # 2czcA.527.266 read from T0547.t06.many.frag # found chain 2czcA in template set Warning: unaligning (T0547)H527 (2czcA)H267 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)F530 (2czcA)W270 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)T531 (2czcA)N271 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2czcA)L273 because D (zeta) conformation "forbidden" or filtered. T0547 528 :NL 2czcA 268 :RE T0547 532 :H 2czcA 272 :N T0547 534 :TE 2czcA 274 :YE Number of specific fragments extracted= 3 number of extra gaps= 3 total=105685 # 1uebA.527.100 read from T0547.t06.many.frag # found chain 1uebA in training set Warning: unaligning (T0547)P533 (1uebA)G107 because T (delta_L) conformation "forbidden" or filtered. T0547 527 :HNLFTH 1uebA 101 :AEFFKE T0547 534 :TE 1uebA 108 :MT Number of specific fragments extracted= 2 number of extra gaps= 1 total=105687 # 1mdaH.527.139 read from T0547.t06.many.frag # found chain 1mdaH in template set Warning: unaligning (T0547)P533 (1mdaH)S146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1mdaH)A148 because Y (epsilon') conformation "forbidden" or filtered. T0547 527 :HNLFTH 1mdaH 140 :FFLFGS T0547 534 :T 1mdaH 147 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=105689 # 1xszA.527.286 read from T0547.t06.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)T531 (1xszA)G289 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1xszA)Q291 because E (beta_S) conformation "forbidden" or filtered. T0547 527 :HNLF 1xszA 285 :KWLF T0547 532 :H 1xszA 290 :E T0547 534 :TE 1xszA 292 :PR Number of specific fragments extracted= 3 number of extra gaps= 2 total=105692 # 1t0tV.528.132 read from T0547.t06.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)A536 (1t0tV)I141 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLFTHPTE 1t0tV 133 :PILPKTNY Number of specific fragments extracted= 1 number of extra gaps= 1 total=105693 # 1ewnA.528.68 read from T0547.t06.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)T534 (1ewnA)G154 because T (delta_L) conformation "forbidden" or filtered. T0547 528 :NLFTHP 1ewnA 148 :GMFMKP T0547 535 :EA 1ewnA 155 :TL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105695 # 1sh8A.528.76 read from T0547.t06.many.frag # found chain 1sh8A in training set T0547 528 :NLFTHPTEA 1sh8A 75 :RFYPIVKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=105696 # 1twfC.528.167 read from T0547.t06.many.frag # found chain 1twfC in template set Warning: unaligning (T0547)A536 (1twfC)I176 because D (zeta) conformation "forbidden" or filtered. T0547 528 :NLFTHPTE 1twfC 168 :AKWGPAAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=105697 # 2a14A.528.184 read from T0547.t06.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. T0547 528 :NLFTH 2a14A 185 :SLLKP T0547 534 :TEA 2a14A 191 :GHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105699 # 1w6sA.528.566 read from T0547.t06.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)P533 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLFTH 1w6sA 567 :NYTQM T0547 534 :TEA 1w6sA 573 :GGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105701 # 2cz1B.528.171 read from T0547.t06.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)T531 (2cz1B)G175 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLF 2cz1B 172 :NDA T0547 532 :H 2cz1B 176 :E T0547 534 :TEA 2cz1B 178 :PTY Number of specific fragments extracted= 3 number of extra gaps= 2 total=105704 # 1kuuA.528.176 read from T0547.t06.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)E535 (1kuuA)T184 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLFTHPT 1kuuA 177 :AAFTHPV T0547 536 :A 1kuuA 185 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=105706 # 1o75A.528.222 read from T0547.t06.many.frag # found chain 1o75A in template set T0547 528 :NLFTHPTEA 1o75A 223 :SRFGSDAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105707 # 2awgA.528.73 read from T0547.t06.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)P533 (2awgA)G166 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2awgA)T168 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLFTH 2awgA 161 :PLMDV T0547 534 :T 2awgA 167 :E T0547 536 :A 2awgA 169 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=105710 # 1pgs.528.104 read from T0547.t06.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)H532 (1pgs)G109 because S (epsilon) conformation "forbidden" or filtered. T0547 528 :NLFT 1pgs 105 :SLLS T0547 533 :PTEA 1pgs 110 :NTEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105712 # 1hxxA.528.127 read from T0547.t06.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1hxxA)G135 because L (left) conformation "forbidden" or filtered. T0547 528 :NLFTH 1hxxA 128 :FFVGR T0547 534 :T 1hxxA 134 :G T0547 536 :A 1hxxA 136 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=105715 # 1ud9A.528.205 read from T0547.t06.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLFTH 1ud9A 206 :SLTKL T0547 534 :TEA 1ud9A 212 :DYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105717 # 1eerB.528.119 read from T0547.t06.many.frag # found chain 1eerB in template set Warning: unaligning (T0547)E535 (1eerB)G126 because L (left) conformation "forbidden" or filtered. T0547 528 :NLFTHPT 1eerB 119 :VLLDAPV T0547 536 :A 1eerB 127 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=105719 # 1wlfA.528.132 read from T0547.t06.many.frag # found chain 1wlfA in template set Warning: unaligning (T0547)P533 (1wlfA)K140 because T (delta_L) conformation "forbidden" or filtered. T0547 528 :NLFTH 1wlfA 135 :RIVFP T0547 534 :TEA 1wlfA 141 :AVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105721 # 2nlrA.528.21 read from T0547.t06.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)N528 (2nlrA)N22 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2nlrA)T27 because G (3-10) conformation "forbidden" or filtered. T0547 529 :LFTH 2nlrA 23 :RWGS T0547 534 :TEA 2nlrA 28 :APQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=105723 # 1mbmA.528.174 read from T0547.t06.many.frag # found chain 1mbmA in template set Warning: unaligning (T0547)P533 (1mbmA)V186 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLFTH 1mbmA 181 :NIIAD T0547 534 :TEA 1mbmA 187 :DAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105725 # 1sqeA.528.29 read from T0547.t06.many.frag # found chain 1sqeA in training set Warning: unaligning (T0547)E535 (1sqeA)Q52 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLFTHPT 1sqeA 45 :ETIEGFQ T0547 536 :A 1sqeA 53 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=105727 # 1ze3C.528.131 read from T0547.t06.many.frag # found chain 1ze3C in template set Warning: unaligning (T0547)N528 (1ze3C)R132 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTHPTEA 1ze3C 133 :FRRSANSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=105728 # 1uebA.528.101 read from T0547.t06.many.frag # found chain 1uebA in training set Warning: unaligning (T0547)P533 (1uebA)G107 because T (delta_L) conformation "forbidden" or filtered. T0547 528 :NLFTH 1uebA 102 :EFFKE T0547 534 :TEA 1uebA 108 :MTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=105730 # 1ydxA.528.292 read from T0547.t06.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)L529 (1ydxA)W271 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1ydxA)T275 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1ydxA)T275 Warning: unaligning (T0547)E535 (1ydxA)S277 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :N 1ydxA 270 :P T0547 530 :FT 1ydxA 272 :FN T0547 534 :T 1ydxA 276 :G T0547 536 :A 1ydxA 278 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=105734 # 1vpsA.528.266 read from T0547.t06.many.frag # found chain 1vpsA in template set Warning: unaligning (T0547)A536 (1vpsA)F306 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLFTHPTE 1vpsA 298 :HWRGLPRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=105735 # 1l3kA.528.125 read from T0547.t06.many.frag # found chain 1l3kA in training set T0547 528 :NLFTHPTEA 1l3kA 126 :EQYGKIEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105736 # 1gmlA.528.133 read from T0547.t06.many.frag # found chain 1gmlA in template set Warning: unaligning (T0547)T531 (1gmlA)T345 because G (3-10) conformation "forbidden" or filtered. T0547 528 :NLF 1gmlA 342 :DVG T0547 532 :HPTEA 1gmlA 346 :GAGLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105738 # 1p1mA.528.362 read from T0547.t06.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)E535 (1p1mA)A370 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLFTHPT 1p1mA 363 :AFSGEVF T0547 536 :A 1p1mA 371 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=105740 # 1v8yA.528.87 read from T0547.t06.many.frag # found chain 1v8yA in training set Warning: unaligning (T0547)T531 (1v8yA)G91 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLF 1v8yA 88 :GLS T0547 532 :HPTEA 1v8yA 92 :DLTYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105742 # 1dk0A.528.83 read from T0547.t06.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)P533 (1dk0A)L89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1dk0A)L92 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLFTH 1dk0A 84 :TLYGQ T0547 534 :TE 1dk0A 90 :DS Number of specific fragments extracted= 2 number of extra gaps= 2 total=105744 # 2ayh.528.138 read from T0547.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)H532 (2ayh)G143 because Y (epsilon') conformation "forbidden" or filtered. T0547 528 :NLFT 2ayh 139 :DASK T0547 533 :PTEA 2ayh 144 :FHTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=105746 # 1hx6A.528.296 read from T0547.t06.many.frag # found chain 1hx6A in training set Warning: unaligning (T0547)P533 (1hx6A)I303 because E (beta_S) conformation "forbidden" or filtered. T0547 528 :NLFTH 1hx6A 298 :NAGTD T0547 534 :TEA 1hx6A 304 :NYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105748 # 1s4bP.528.373 read from T0547.t06.many.frag # found chain 1s4bP in template set Warning: unaligning (T0547)N528 (1s4bP)A389 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTHPTEA 1s4bP 390 :WHEDVRLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=105749 # 1t0tV.529.133 read from T0547.t06.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)A536 (1t0tV)I141 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTHPTE 1t0tV 134 :ILPKTNY T0547 537 :I 1t0tV 142 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=105751 # 1sh8A.529.77 read from T0547.t06.many.frag # found chain 1sh8A in training set T0547 529 :LFTHPTEAI 1sh8A 76 :FYPIVKEMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105752 # 1o75A.529.223 read from T0547.t06.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)T531 (1o75A)G226 because T (delta_L) conformation "forbidden" or filtered. T0547 529 :LF 1o75A 224 :RF T0547 532 :HPTEAI 1o75A 227 :SDAEAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=105754 # 1w6sA.529.567 read from T0547.t06.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)P533 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1w6sA)G574 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTH 1w6sA 568 :YTQM T0547 534 :T 1w6sA 573 :G T0547 536 :AI 1w6sA 575 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=105757 # 2cz1B.529.172 read from T0547.t06.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)T531 (2cz1B)G175 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LF 2cz1B 173 :DA T0547 532 :H 2cz1B 176 :E T0547 534 :TEAI 2cz1B 178 :PTYH Number of specific fragments extracted= 3 number of extra gaps= 2 total=105760 # 1ewnA.529.69 read from T0547.t06.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)F530 (1ewnA)F150 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1ewnA)K152 because P (beta_P) conformation "forbidden" or filtered. T0547 529 :L 1ewnA 149 :M T0547 531 :T 1ewnA 151 :M T0547 533 :PTEAI 1ewnA 153 :PGTLY Number of specific fragments extracted= 3 number of extra gaps= 2 total=105763 # 1kuuA.529.177 read from T0547.t06.many.frag # found chain 1kuuA in template set T0547 529 :LFTHPTEAI 1kuuA 178 :AFTHPVTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=105764 # 2awgA.529.74 read from T0547.t06.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)P533 (2awgA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 529 :LFTH 2awgA 162 :LMDV T0547 534 :TEAI 2awgA 167 :ETAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=105766 # 1hxxA.529.128 read from T0547.t06.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1hxxA)G135 because L (left) conformation "forbidden" or filtered. T0547 529 :LFTH 1hxxA 129 :FVGR T0547 534 :T 1hxxA 134 :G T0547 536 :AI 1hxxA 136 :VA Number of specific fragments extracted= 3 number of extra gaps= 2 total=105769 # 2bbdA.529.225 read from T0547.t06.many.frag # found chain 2bbdA in template set Warning: unaligning (T0547)T534 (2bbdA)T232 because G (3-10) conformation "forbidden" or filtered. T0547 529 :LFTHP 2bbdA 227 :NNTDP T0547 535 :EAI 2bbdA 233 :EYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=105771 # 1twfC.529.168 read from T0547.t06.many.frag # found chain 1twfC in template set T0547 529 :LFTHPTEAI 1twfC 169 :KWGPAAAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105772 # 1ud9A.529.206 read from T0547.t06.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTH 1ud9A 207 :LTKL T0547 534 :TEAI 1ud9A 212 :DYVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=105774 # 1ze3C.529.132 read from T0547.t06.many.frag # found chain 1ze3C in template set T0547 529 :LFTHPTEAI 1ze3C 133 :FRRSANSLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105775 # 1sqeA.529.30 read from T0547.t06.many.frag # found chain 1sqeA in training set Warning: unaligning (T0547)H532 (1sqeA)G49 because T (delta_L) conformation "forbidden" or filtered. T0547 529 :LFT 1sqeA 46 :TIE T0547 533 :PTEAI 1sqeA 50 :FQQMF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105777 # 1pgs.529.105 read from T0547.t06.many.frag # found chain 1pgs in training set Warning: unaligning (T0547)H532 (1pgs)G109 because S (epsilon) conformation "forbidden" or filtered. T0547 529 :LFT 1pgs 106 :LLS T0547 533 :PTEAI 1pgs 110 :NTELK Number of specific fragments extracted= 2 number of extra gaps= 1 total=105779 # 1hx6A.529.297 read from T0547.t06.many.frag # found chain 1hx6A in training set Warning: unaligning (T0547)P533 (1hx6A)I303 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTH 1hx6A 299 :AGTD T0547 534 :TEAI 1hx6A 304 :NYLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=105781 # 1wlfA.529.133 read from T0547.t06.many.frag # found chain 1wlfA in template set Warning: unaligning (T0547)P533 (1wlfA)K140 because T (delta_L) conformation "forbidden" or filtered. T0547 529 :LFTH 1wlfA 136 :IVFP T0547 534 :TEAI 1wlfA 141 :AVVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=105783 # 1eerB.529.120 read from T0547.t06.many.frag # found chain 1eerB in template set Warning: unaligning (T0547)E535 (1eerB)G126 because L (left) conformation "forbidden" or filtered. T0547 529 :LFTHPT 1eerB 120 :LLDAPV T0547 536 :AI 1eerB 127 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105785 # 1jihA.529.435 read from T0547.t06.many.frag # found chain 1jihA in template set T0547 529 :LFTHPTEAI 1jihA 436 :KIVIPRTVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=105786 # 1p1mA.529.363 read from T0547.t06.many.frag # found chain 1p1mA in training set Warning: unaligning (T0547)T531 (1p1mA)G366 because T (delta_L) conformation "forbidden" or filtered. T0547 529 :LF 1p1mA 364 :FS T0547 532 :HPTEAI 1p1mA 367 :EVFATM Number of specific fragments extracted= 2 number of extra gaps= 1 total=105788 # 2ayh.529.139 read from T0547.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)H532 (2ayh)G143 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFT 2ayh 140 :ASK T0547 533 :PTEAI 2ayh 144 :FHTYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=105790 # 1s4bP.529.374 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 529 :LFTHPTEAI 1s4bP 390 :WHEDVRLYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105791 # 1ok0A.529.13 read from T0547.t06.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)E535 because of BadResidue code BAD_PEPTIDE in next template residue (1ok0A)S21 Warning: unaligning (T0547)A536 because of BadResidue code BAD_PEPTIDE at template residue (1ok0A)S21 T0547 529 :LFTHPT 1ok0A 14 :LYQSWR T0547 537 :I 1ok0A 22 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=105793 # 1ten.529.24 read from T0547.t06.many.frag # found chain 1ten in training set Warning: unaligning (T0547)P533 (1ten)I830 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1ten)G832 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTH 1ten 826 :PLAE T0547 534 :T 1ten 831 :D T0547 536 :AI 1ten 833 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=105796 # 1gmlA.529.134 read from T0547.t06.many.frag # found chain 1gmlA in template set T0547 529 :LFTHPTEAI 1gmlA 343 :VGTGAGLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=105797 # 2bemA.529.84 read from T0547.t06.many.frag # found chain 2bemA in training set Warning: unaligning (T0547)P533 (2bemA)T116 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2bemA)S118 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTH 2bemA 112 :ARHS T0547 534 :T 2bemA 117 :T T0547 536 :AI 2bemA 119 :WR Number of specific fragments extracted= 3 number of extra gaps= 2 total=105800 # 1vpsA.529.267 read from T0547.t06.many.frag # found chain 1vpsA in template set T0547 529 :LFTHPTEAI 1vpsA 299 :WRGLPRYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105801 # 2a14A.529.185 read from T0547.t06.many.frag # found chain 2a14A in training set Warning: unaligning (T0547)P533 (2a14A)G190 because T (delta_L) conformation "forbidden" or filtered. T0547 529 :LFTH 2a14A 186 :LLKP T0547 534 :TEAI 2a14A 191 :GHLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105803 # 1g6sA.529.358 read from T0547.t06.many.frag # found chain 1g6sA in training set Warning: unaligning (T0547)E535 (1g6sA)Y365 because Y (epsilon') conformation "forbidden" or filtered. T0547 529 :LFTHPT 1g6sA 359 :VEEGHD T0547 536 :AI 1g6sA 366 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=105805 # 1crzA.529.267 read from T0547.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)P533 (1crzA)S278 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1crzA)L281 because E (beta_S) conformation "forbidden" or filtered. T0547 529 :LFTH 1crzA 274 :WFPD T0547 534 :TE 1crzA 279 :QN T0547 537 :I 1crzA 282 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=105808 # 1t0tV.530.134 read from T0547.t06.many.frag # found chain 1t0tV in training set T0547 530 :FTHPTEAII 1t0tV 135 :LPKTNYICF Number of specific fragments extracted= 1 number of extra gaps= 0 total=105809 # 2cz1B.530.173 read from T0547.t06.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FTH 2cz1B 174 :AGE T0547 534 :TEAII 2cz1B 178 :PTYHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105811 # 1sh8A.530.78 read from T0547.t06.many.frag # found chain 1sh8A in training set T0547 530 :FTHPTEAII 1sh8A 77 :YPIVKEMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105812 # 1w6sA.530.568 read from T0547.t06.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)P533 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1w6sA)V575 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FTH 1w6sA 569 :TQM T0547 534 :TE 1w6sA 573 :GG T0547 537 :II 1w6sA 576 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=105815 # 1ze3C.530.133 read from T0547.t06.many.frag # found chain 1ze3C in template set T0547 530 :FTHPTEAII 1ze3C 134 :RRSANSLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105816 # 1sqeA.530.31 read from T0547.t06.many.frag # found chain 1sqeA in training set Warning: unaligning (T0547)E535 (1sqeA)Q52 because Y (epsilon') conformation "forbidden" or filtered. T0547 530 :FTHPT 1sqeA 47 :IEGFQ T0547 536 :AII 1sqeA 53 :MFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105818 # 2bbdA.530.226 read from T0547.t06.many.frag # found chain 2bbdA in template set T0547 530 :FTHPTEAII 2bbdA 228 :NTDPTEYEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=105819 # 1o75A.530.224 read from T0547.t06.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)T531 (1o75A)G226 because T (delta_L) conformation "forbidden" or filtered. T0547 530 :F 1o75A 225 :F T0547 532 :HPTEAII 1o75A 227 :SDAEASV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105821 # 1hxxA.530.129 read from T0547.t06.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1hxxA)G135 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1hxxA)V136 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FTH 1hxxA 130 :VGR T0547 534 :T 1hxxA 134 :G T0547 537 :II 1hxxA 137 :AT Number of specific fragments extracted= 3 number of extra gaps= 2 total=105824 # 2awgA.530.75 read from T0547.t06.many.frag # found chain 2awgA in training set Warning: unaligning (T0547)P533 (2awgA)G166 because T (delta_L) conformation "forbidden" or filtered. T0547 530 :FTH 2awgA 163 :MDV T0547 534 :TEAII 2awgA 167 :ETAMV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105826 # 1kuuA.530.178 read from T0547.t06.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)H532 (1kuuA)H181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1kuuA)T184 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I537 (1kuuA)A186 because Y (epsilon') conformation "forbidden" or filtered. T0547 530 :FT 1kuuA 179 :FT T0547 533 :PT 1kuuA 182 :PV T0547 536 :A 1kuuA 185 :A T0547 538 :I 1kuuA 187 :A Number of specific fragments extracted= 4 number of extra gaps= 3 total=105830 # 1crzA.530.268 read from T0547.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)P533 (1crzA)S278 because L (left) conformation "forbidden" or filtered. T0547 530 :FTH 1crzA 275 :FPD T0547 534 :TEAII 1crzA 279 :QNLAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105832 # 1kjlA.530.98 read from T0547.t06.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)E535 (1kjlA)H208 because Y (epsilon') conformation "forbidden" or filtered. T0547 530 :FTHPT 1kjlA 203 :LVEPD T0547 536 :AII 1kjlA 209 :FKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105834 # 1ok0A.530.14 read from T0547.t06.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)E535 because of BadResidue code BAD_PEPTIDE in next template residue (1ok0A)S21 Warning: unaligning (T0547)A536 because of BadResidue code BAD_PEPTIDE at template residue (1ok0A)S21 T0547 530 :FTHPT 1ok0A 15 :YQSWR T0547 537 :II 1ok0A 22 :QA Number of specific fragments extracted= 2 number of extra gaps= 1 total=105836 # 1ewnA.530.70 read from T0547.t06.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)T534 (1ewnA)G154 because T (delta_L) conformation "forbidden" or filtered. T0547 530 :FTHP 1ewnA 150 :FMKP T0547 535 :EAII 1ewnA 155 :TLYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105838 # 1ten.530.25 read from T0547.t06.many.frag # found chain 1ten in training set Warning: unaligning (T0547)P533 (1ten)I830 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1ten)G832 because Y (epsilon') conformation "forbidden" or filtered. T0547 530 :FTH 1ten 827 :LAE T0547 534 :T 1ten 831 :D T0547 536 :AII 1ten 833 :IEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=105841 # 2ayh.530.140 read from T0547.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)H532 (2ayh)G143 because Y (epsilon') conformation "forbidden" or filtered. T0547 530 :FT 2ayh 141 :SK T0547 533 :PTEAII 2ayh 144 :FHTYAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105843 # 1s4bP.530.375 read from T0547.t06.many.frag # found chain 1s4bP in template set Warning: unaligning (T0547)A536 (1s4bP)Y397 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FTHPTE 1s4bP 391 :HEDVRL T0547 537 :II 1s4bP 398 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=105845 # 1g6sA.530.359 read from T0547.t06.many.frag # found chain 1g6sA in training set Warning: unaligning (T0547)E535 (1g6sA)Y365 because Y (epsilon') conformation "forbidden" or filtered. T0547 530 :FTHPT 1g6sA 360 :EEGHD T0547 536 :AII 1g6sA 366 :IRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=105847 # 1ud9A.530.207 read from T0547.t06.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 530 :FTH 1ud9A 208 :TKL T0547 534 :TEAII 1ud9A 212 :DYVKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105849 # 1hx6A.530.298 read from T0547.t06.many.frag # found chain 1hx6A in training set Warning: unaligning (T0547)F530 (1hx6A)G300 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1hx6A)I303 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1hx6A)Y305 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :TH 1hx6A 301 :TD T0547 534 :T 1hx6A 304 :N T0547 536 :AII 1hx6A 306 :LSQ Number of specific fragments extracted= 3 number of extra gaps= 3 total=105852 # 1qlmA.530.282 read from T0547.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)H532 (1qlmA)A285 because Y (epsilon') conformation "forbidden" or filtered. T0547 530 :FT 1qlmA 283 :VF T0547 533 :PTEAII 1qlmA 286 :PARVVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105854 # 1vqsA.530.56 read from T0547.t06.many.frag # found chain 1vqsA in training set Warning: unaligning (T0547)T531 (1vqsA)G46 because S (epsilon) conformation "forbidden" or filtered. T0547 530 :F 1vqsA 45 :I T0547 532 :HPTEAII 1vqsA 47 :PINEIVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=105856 # 2bemA.530.85 read from T0547.t06.many.frag # found chain 2bemA in training set Warning: unaligning (T0547)P533 (2bemA)T116 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2bemA)S118 because Y (epsilon') conformation "forbidden" or filtered. T0547 530 :FTH 2bemA 113 :RHS T0547 534 :T 2bemA 117 :T T0547 536 :AII 2bemA 119 :WRY Number of specific fragments extracted= 3 number of extra gaps= 2 total=105859 # 1wlfA.530.134 read from T0547.t06.many.frag # found chain 1wlfA in template set Warning: unaligning (T0547)P533 (1wlfA)K140 because T (delta_L) conformation "forbidden" or filtered. T0547 530 :FTH 1wlfA 137 :VFP T0547 534 :TEAII 1wlfA 141 :AVVPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=105861 # 1jhjA.530.86 read from T0547.t06.many.frag # found chain 1jhjA in training set T0547 530 :FTHPTEAII 1jhjA 88 :SYTPSKISV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105862 # 1f00I.530.158 read from T0547.t06.many.frag # found chain 1f00I in template set Warning: unaligning (T0547)P533 (1f00I)T819 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FTH 1f00I 816 :EKG T0547 534 :TEAII 1f00I 820 :TTISV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105864 1s21A expands to /projects/compbio/data/pdb/1s21.pdb.gz 1s21A:# 1s21A.530.183 read from T0547.t06.many.frag # adding 1s21A to template set # found chain 1s21A in template set Warning: unaligning (T0547)P533 (1s21A)V185 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1s21A)A187 because P (beta_P) conformation "forbidden" or filtered. T0547 530 :FTH 1s21A 182 :GDS T0547 534 :T 1s21A 186 :E T0547 536 :AII 1s21A 188 :LIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=105867 # 1od3A.530.87 read from T0547.t06.many.frag # found chain 1od3A in training set Warning: unaligning (T0547)H532 (1od3A)G73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1od3A)A74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (1od3A)T75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1od3A)V77 because E (beta_S) conformation "forbidden" or filtered. T0547 530 :FT 1od3A 71 :GD T0547 535 :E 1od3A 76 :S T0547 537 :II 1od3A 78 :TA Number of specific fragments extracted= 3 number of extra gaps= 2 total=105870 # 1qhdA.530.253 read from T0547.t06.many.frag # found chain 1qhdA in template set Warning: unaligning (T0547)E535 (1qhdA)N258 because L (left) conformation "forbidden" or filtered. T0547 530 :FTHPT 1qhdA 253 :ILRPN T0547 536 :AII 1qhdA 259 :VEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=105872 # 2cz1B.531.174 read from T0547.t06.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 531 :TH 2cz1B 175 :GE T0547 534 :TEAIIS 2cz1B 178 :PTYHVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=105874 # 1ze3C.531.134 read from T0547.t06.many.frag # found chain 1ze3C in template set T0547 531 :THPTEAIIS 1ze3C 135 :RSANSLTLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105875 # 1ud9A.531.208 read from T0547.t06.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :TH 1ud9A 209 :KL T0547 534 :TEAIIS 1ud9A 212 :DYVKVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=105877 # 1w6sA.531.569 read from T0547.t06.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)P533 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1w6sA)G574 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :TH 1w6sA 570 :QM T0547 534 :T 1w6sA 573 :G T0547 536 :AIIS 1w6sA 575 :VVVF Number of specific fragments extracted= 3 number of extra gaps= 2 total=105880 # 1t0tV.531.135 read from T0547.t06.many.frag # found chain 1t0tV in training set T0547 531 :THPTEAIIS 1t0tV 136 :PKTNYICFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=105881 # 1sh8A.531.79 read from T0547.t06.many.frag # found chain 1sh8A in training set T0547 531 :THPTEAIIS 1sh8A 78 :PIVKEMTLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=105882 # 1crzA.531.269 read from T0547.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)P533 (1crzA)S278 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I538 (1crzA)F283 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :TH 1crzA 276 :PD T0547 534 :TEAI 1crzA 279 :QNLA T0547 539 :S 1crzA 284 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=105885 # 1kjlA.531.99 read from T0547.t06.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)E535 (1kjlA)H208 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :THPT 1kjlA 204 :VEPD T0547 536 :AIIS 1kjlA 209 :FKVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=105887 # 1ok0A.531.15 read from T0547.t06.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)E535 because of BadResidue code BAD_PEPTIDE in next template residue (1ok0A)S21 Warning: unaligning (T0547)A536 because of BadResidue code BAD_PEPTIDE at template residue (1ok0A)S21 T0547 531 :THPT 1ok0A 16 :QSWR T0547 537 :IIS 1ok0A 22 :QAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=105889 # 1vbvA.531.46 read from T0547.t06.many.frag # found chain 1vbvA in template set Warning: unaligning (T0547)H532 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)A48 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vbvA)P50 Warning: unaligning (T0547)T534 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)P50 T0547 535 :EAIIS 1vbvA 51 :WYHVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105890 # 1hxxA.531.130 read from T0547.t06.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1hxxA)G135 because L (left) conformation "forbidden" or filtered. T0547 531 :TH 1hxxA 131 :GR T0547 534 :T 1hxxA 134 :G T0547 536 :AIIS 1hxxA 136 :VATY Number of specific fragments extracted= 3 number of extra gaps= 2 total=105893 # 2bbdA.531.227 read from T0547.t06.many.frag # found chain 2bbdA in template set T0547 531 :THPTEAIIS 2bbdA 229 :TDPTEYELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105894 # 1ckmA.531.274 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)P533 (1ckmA)G277 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1ckmA)I279 because E (beta_S) conformation "forbidden" or filtered. T0547 531 :TH 1ckmA 275 :NK T0547 534 :T 1ckmA 278 :S T0547 536 :AIIS 1ckmA 280 :VECG Number of specific fragments extracted= 3 number of extra gaps= 2 total=105897 # 2ayh.531.141 read from T0547.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)H532 (2ayh)G143 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :T 2ayh 142 :K T0547 533 :PTEAIIS 2ayh 144 :FHTYAFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=105899 # 1p5tA.531.63 read from T0547.t06.many.frag # found chain 1p5tA in template set Warning: unaligning (T0547)T531 (1p5tA)R64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)H532 (1p5tA)D65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1p5tA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PT 1p5tA 66 :KV T0547 536 :AIIS 1p5tA 69 :FSFE Number of specific fragments extracted= 2 number of extra gaps= 2 total=105901 # 1rwhA.531.650 read from T0547.t06.many.frag # found chain 1rwhA in training set Warning: unaligning (T0547)H532 (1rwhA)D652 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :T 1rwhA 651 :N T0547 533 :PTEAIIS 1rwhA 653 :ATAQSVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=105903 # 1sqeA.531.32 read from T0547.t06.many.frag # found chain 1sqeA in training set T0547 531 :THPTEAIIS 1sqeA 48 :EGFQQMFVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105904 # 1o75A.531.225 read from T0547.t06.many.frag # found chain 1o75A in template set T0547 531 :THPTEAIIS 1o75A 226 :GSDAEASVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=105905 # 1ewnA.531.71 read from T0547.t06.many.frag # found chain 1ewnA in template set Warning: unaligning (T0547)T534 (1ewnA)G154 because T (delta_L) conformation "forbidden" or filtered. T0547 531 :THP 1ewnA 151 :MKP T0547 535 :EAIIS 1ewnA 155 :TLYVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=105907 # 1qlmA.531.283 read from T0547.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0547)H532 (1qlmA)A285 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :T 1qlmA 284 :F T0547 533 :PTEAIIS 1qlmA 286 :PARVVVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=105909 # 1g6sA.531.360 read from T0547.t06.many.frag # found chain 1g6sA in training set T0547 531 :THPTEAIIS 1g6sA 361 :EGHDYIRIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=105910 # 1xyiA.531.24 read from T0547.t06.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)H532 (1xyiA)A26 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)P533 (1xyiA)G27 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1xyiA)V30 because P (beta_P) conformation "forbidden" or filtered. T0547 531 :T 1xyiA 25 :R T0547 534 :TE 1xyiA 28 :KA T0547 537 :IIS 1xyiA 31 :SFT Number of specific fragments extracted= 3 number of extra gaps= 2 total=105913 # 1s4bP.531.376 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 531 :THPTEAIIS 1s4bP 392 :EDVRLYTAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=105914 # 1ten.531.26 read from T0547.t06.many.frag # found chain 1ten in training set Warning: unaligning (T0547)P533 (1ten)I830 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1ten)G832 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :TH 1ten 828 :AE T0547 534 :T 1ten 831 :D T0547 536 :AIIS 1ten 833 :IELT Number of specific fragments extracted= 3 number of extra gaps= 2 total=105917 # 1wlfA.531.135 read from T0547.t06.many.frag # found chain 1wlfA in template set Warning: unaligning (T0547)P533 (1wlfA)K140 because T (delta_L) conformation "forbidden" or filtered. T0547 531 :TH 1wlfA 138 :FP T0547 534 :TEAIIS 1wlfA 141 :AVVPIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=105919 # 1ujcA.531.128 read from T0547.t06.many.frag # found chain 1ujcA in template set Warning: unaligning (T0547)P533 (1ujcA)S131 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S539 (1ujcA)T137 because P (beta_P) conformation "forbidden" or filtered. T0547 531 :TH 1ujcA 129 :TT T0547 534 :TEAII 1ujcA 132 :AIASV Number of specific fragments extracted= 2 number of extra gaps= 2 total=105921 # 1zh1A.531.78 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)P533 (1zh1A)E116 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1zh1A)Y118 because E (beta_S) conformation "forbidden" or filtered. T0547 531 :TH 1zh1A 114 :AA T0547 534 :T 1zh1A 117 :E T0547 536 :AIIS 1zh1A 119 :VEVT Number of specific fragments extracted= 3 number of extra gaps= 2 total=105924 # 1kuuA.531.179 read from T0547.t06.many.frag # found chain 1kuuA in template set Warning: unaligning (T0547)E535 (1kuuA)T184 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :THPT 1kuuA 180 :THPV T0547 536 :AIIS 1kuuA 185 :AAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=105926 # 1ydxA.531.295 read from T0547.t06.many.frag # found chain 1ydxA in template set Warning: unaligning (T0547)H532 because of BadResidue code BAD_PEPTIDE in next template residue (1ydxA)T275 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE at template residue (1ydxA)T275 T0547 531 :T 1ydxA 273 :N T0547 534 :TEAIIS 1ydxA 276 :GSIALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=105928 # 1xxaA.531.47 read from T0547.t06.many.frag # found chain 1xxaA in template set Warning: unaligning (T0547)H532 (1xxaA)G127 because Y (epsilon') conformation "forbidden" or filtered. T0547 531 :T 1xxaA 126 :A T0547 533 :PTEAIIS 1xxaA 128 :DDTIFTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=105930 # 2cz1B.532.175 read from T0547.t06.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :H 2cz1B 176 :E T0547 534 :TEAIISI 2cz1B 178 :PTYHVKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105932 # 1rwhA.532.651 read from T0547.t06.many.frag # found chain 1rwhA in training set Warning: unaligning (T0547)E535 (1rwhA)A655 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1rwhA)Q656 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :HPT 1rwhA 652 :DAT T0547 537 :IISI 1rwhA 657 :SVEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105934 # 1w6sA.532.570 read from T0547.t06.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)P533 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1w6sA)G574 because Y (epsilon') conformation "forbidden" or filtered. T0547 532 :H 1w6sA 571 :M T0547 534 :T 1w6sA 573 :G T0547 536 :AIISI 1w6sA 575 :VVVFS Number of specific fragments extracted= 3 number of extra gaps= 2 total=105937 # 1ze3C.532.135 read from T0547.t06.many.frag # found chain 1ze3C in template set T0547 532 :HPTEAIISI 1ze3C 136 :SANSLTLIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=105938 # 1crzA.532.270 read from T0547.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)P533 (1crzA)S278 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)I538 (1crzA)F283 because Y (epsilon') conformation "forbidden" or filtered. T0547 532 :H 1crzA 277 :D T0547 534 :TEAI 1crzA 279 :QNLA T0547 539 :SI 1crzA 284 :TS Number of specific fragments extracted= 3 number of extra gaps= 2 total=105941 # 1ud9A.532.209 read from T0547.t06.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 532 :H 1ud9A 210 :L T0547 534 :TEAIISI 1ud9A 212 :DYVKVAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105943 # 2ayh.532.142 read from T0547.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)H532 (2ayh)G143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I537 (2ayh)A148 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PTEA 2ayh 144 :FHTY T0547 538 :ISI 2ayh 149 :FDW Number of specific fragments extracted= 2 number of extra gaps= 2 total=105945 # 2bbdA.532.228 read from T0547.t06.many.frag # found chain 2bbdA in template set T0547 532 :HPTEAIISI 2bbdA 230 :DPTEYELKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=105946 # 1sqeA.532.33 read from T0547.t06.many.frag # found chain 1sqeA in training set Warning: unaligning (T0547)H532 (1sqeA)G49 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1sqeA)Q52 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PT 1sqeA 50 :FQ T0547 536 :AIISI 1sqeA 53 :MFVTK Number of specific fragments extracted= 2 number of extra gaps= 2 total=105948 # 1xipA.532.244 read from T0547.t06.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)P533 (1xipA)Q245 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1xipA)Y248 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :H 1xipA 244 :D T0547 534 :TE 1xipA 246 :KM T0547 537 :IISI 1xipA 249 :IIKH Number of specific fragments extracted= 3 number of extra gaps= 2 total=105951 # 1v5iB.532.0 read from T0547.t06.many.frag # found chain 1v5iB in training set Warning: unaligning (T0547)H532 because first residue in template chain is (1v5iB)S1 Warning: unaligning (T0547)P533 (1v5iB)A2 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (1v5iB)G3 because S (epsilon) conformation "forbidden" or filtered. T0547 535 :EAIISI 1v5iB 4 :KFIVIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=105952 # 1kjlA.532.100 read from T0547.t06.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)E535 (1kjlA)H208 because Y (epsilon') conformation "forbidden" or filtered. T0547 532 :HPT 1kjlA 205 :EPD T0547 536 :AIISI 1kjlA 209 :FKVAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105954 # 1sh8A.532.80 read from T0547.t06.many.frag # found chain 1sh8A in training set Warning: unaligning (T0547)E535 (1sh8A)E82 because Y (epsilon') conformation "forbidden" or filtered. T0547 532 :HPT 1sh8A 79 :IVK T0547 536 :AIISI 1sh8A 83 :MTLRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105956 # 1ujcA.532.129 read from T0547.t06.many.frag # found chain 1ujcA in template set Warning: unaligning (T0547)P533 (1ujcA)S131 because T (delta_L) conformation "forbidden" or filtered. T0547 532 :H 1ujcA 130 :T T0547 534 :TEAIISI 1ujcA 132 :AIASVTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=105958 # 1o75A.532.226 read from T0547.t06.many.frag # found chain 1o75A in template set T0547 532 :HPTEAIISI 1o75A 227 :SDAEASVML Number of specific fragments extracted= 1 number of extra gaps= 0 total=105959 # 1p5tA.532.64 read from T0547.t06.many.frag # found chain 1p5tA in template set Warning: unaligning (T0547)H532 (1p5tA)D65 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PTEAIISI 1p5tA 66 :KVMFSFEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=105960 # 1zh1A.532.79 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)P533 (1zh1A)E116 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1zh1A)V119 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :H 1zh1A 115 :A T0547 534 :TE 1zh1A 117 :EY T0547 537 :IISI 1zh1A 120 :EVTR Number of specific fragments extracted= 3 number of extra gaps= 2 total=105963 # 1hxxA.532.131 read from T0547.t06.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :H 1hxxA 132 :R T0547 534 :TEAIISI 1hxxA 134 :GGVATYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=105965 # 1vbvA.532.47 read from T0547.t06.many.frag # found chain 1vbvA in template set Warning: unaligning (T0547)H532 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)A48 Warning: unaligning (T0547)P533 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (1vbvA)P50 Warning: unaligning (T0547)T534 because of BadResidue code BAD_PEPTIDE+HIGH_B_FACTOR at template residue (1vbvA)P50 Warning: unaligning (T0547)S539 (1vbvA)V55 because P (beta_P) conformation "forbidden" or filtered. T0547 535 :EAII 1vbvA 51 :WYHV T0547 540 :I 1vbvA 56 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=105967 # 1ckmA.532.275 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)P533 (1ckmA)G277 because T (delta_L) conformation "forbidden" or filtered. T0547 532 :H 1ckmA 276 :K T0547 534 :TEAIISI 1ckmA 278 :SIVECGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105969 # 1l8bA.532.120 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 532 :HPTEAIISI 1l8bA 148 :DVCGAVVNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=105970 # 1ok0A.532.16 read from T0547.t06.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)E535 because of BadResidue code BAD_PEPTIDE in next template residue (1ok0A)S21 Warning: unaligning (T0547)A536 because of BadResidue code BAD_PEPTIDE at template residue (1ok0A)S21 T0547 532 :HPT 1ok0A 17 :SWR T0547 537 :IISI 1ok0A 22 :QADN Number of specific fragments extracted= 2 number of extra gaps= 1 total=105972 # 2ffmA.532.56 read from T0547.t06.many.frag # found chain 2ffmA in template set Warning: unaligning (T0547)E535 (2ffmA)F60 because Y (epsilon') conformation "forbidden" or filtered. T0547 532 :HPT 2ffmA 57 :VMD T0547 536 :AIISI 2ffmA 61 :ISVDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=105974 # 3proC.532.123 read from T0547.t06.many.frag # found chain 3proC in training set Warning: unaligning (T0547)P533 (3proC)S125 because G (3-10) conformation "forbidden" or filtered. T0547 532 :H 3proC 124 :R T0547 534 :TEAIISI 3proC 126 :NAVVVKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105976 # 1s4bP.532.377 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 532 :HPTEAIISI 1s4bP 393 :DVRLYTARD Number of specific fragments extracted= 1 number of extra gaps= 0 total=105977 # 2brfA.532.46 read from T0547.t06.many.frag # found chain 2brfA in training set Warning: unaligning (T0547)H532 (2brfA)S47 because P (beta_P) conformation "forbidden" or filtered. T0547 533 :PTEAIISI 2brfA 48 :RTQVELVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=105978 # 1ahsA.532.101 read from T0547.t06.many.frag # found chain 1ahsA in template set Warning: unaligning (T0547)H532 (1ahsA)T227 because T (delta_L) conformation "forbidden" or filtered. T0547 533 :PTEAIISI 1ahsA 228 :IAPVNVGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=105979 # 1v04A.532.137 read from T0547.t06.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)P533 (1v04A)S139 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :H 1v04A 138 :S T0547 534 :TEAIISI 1v04A 140 :TVEVFKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105981 # 1jhjA.532.88 read from T0547.t06.many.frag # found chain 1jhjA in training set Warning: unaligning (T0547)A536 (1jhjA)I94 because E (beta_S) conformation "forbidden" or filtered. T0547 532 :HPTE 1jhjA 90 :TPSK T0547 537 :IISI 1jhjA 95 :SVRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=105983 # 1jtgB.532.142 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)P533 (1jtgB)R144 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (1jtgB)G145 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1jtgB)S146 because Y (epsilon') conformation "forbidden" or filtered. T0547 532 :H 1jtgB 143 :Y T0547 536 :AIISI 1jtgB 147 :AHLWF Number of specific fragments extracted= 2 number of extra gaps= 1 total=105985 # 2cz1B.533.176 read from T0547.t06.many.frag # found chain 2cz1B in training set Warning: unaligning (T0547)P533 (2cz1B)E177 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 2cz1B 178 :PTYHVKFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=105986 # 1w6sA.533.571 read from T0547.t06.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)P533 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1w6sA)L580 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :TEAIISI 1w6sA 573 :GGVVVFS Number of specific fragments extracted= 1 number of extra gaps= 2 total=105987 # 1ze3C.533.136 read from T0547.t06.many.frag # found chain 1ze3C in template set T0547 533 :PTEAIISIN 1ze3C 137 :ANSLTLINP Number of specific fragments extracted= 1 number of extra gaps= 0 total=105988 # 1v5iB.533.1 read from T0547.t06.many.frag # found chain 1v5iB in training set Warning: unaligning (T0547)P533 (1v5iB)A2 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (1v5iB)G3 because S (epsilon) conformation "forbidden" or filtered. T0547 535 :EAIISIN 1v5iB 4 :KFIVIFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=105989 # 1ud9A.533.210 read from T0547.t06.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)P533 (1ud9A)S211 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1ud9A 212 :DYVKVAFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=105990 # 1rwhA.533.652 read from T0547.t06.many.frag # found chain 1rwhA in training set T0547 533 :PTEAIISIN 1rwhA 653 :ATAQSVEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105991 # 1xipA.533.245 read from T0547.t06.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)P533 (1xipA)Q245 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1xipA 246 :KMYIIKHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=105992 # 1crzA.533.271 read from T0547.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)P533 (1crzA)S278 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S539 (1crzA)T284 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :TEAII 1crzA 279 :QNLAF T0547 540 :IN 1crzA 285 :SD Number of specific fragments extracted= 2 number of extra gaps= 2 total=105994 # 1o75A.533.227 read from T0547.t06.many.frag # found chain 1o75A in template set T0547 533 :PTEAIISIN 1o75A 228 :DAEASVMLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=105995 # 1ujcA.533.130 read from T0547.t06.many.frag # found chain 1ujcA in template set Warning: unaligning (T0547)P533 (1ujcA)S131 because T (delta_L) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1ujcA 132 :AIASVTLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=105996 # 1l8bA.533.121 read from T0547.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)E535 (1l8bA)G151 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PT 1l8bA 149 :VC T0547 536 :AIISIN 1l8bA 152 :AVVNVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=105998 # 2bbdA.533.229 read from T0547.t06.many.frag # found chain 2bbdA in template set Warning: unaligning (T0547)T534 (2bbdA)T232 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (2bbdA)E233 because E (beta_S) conformation "forbidden" or filtered. T0547 533 :P 2bbdA 231 :P T0547 536 :AIISIN 2bbdA 234 :YELKIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106000 # 1hxxA.533.132 read from T0547.t06.many.frag # found chain 1hxxA in template set Warning: unaligning (T0547)P533 (1hxxA)V133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1hxxA)G135 because L (left) conformation "forbidden" or filtered. T0547 534 :T 1hxxA 134 :G T0547 536 :AIISIN 1hxxA 136 :VATYRN Number of specific fragments extracted= 2 number of extra gaps= 2 total=106002 # 1sqeA.533.34 read from T0547.t06.many.frag # found chain 1sqeA in training set Warning: unaligning (T0547)E535 (1sqeA)Q52 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PT 1sqeA 50 :FQ T0547 536 :AIISIN 1sqeA 53 :MFVTKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=106004 # 1jtgB.533.143 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)P533 (1jtgB)R144 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (1jtgB)G145 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1jtgB)S146 because Y (epsilon') conformation "forbidden" or filtered. T0547 536 :AIISIN 1jtgB 147 :AHLWFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=106005 # 1s4bP.533.378 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 533 :PTEAIISIN 1s4bP 394 :VRLYTARDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106006 # 1zh1A.533.80 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)P533 (1zh1A)E116 because G (3-10) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1zh1A 117 :EYVEVTRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=106007 # 1ckmA.533.276 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)P533 (1ckmA)G277 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1ckmA)A285 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :TEAIISI 1ckmA 278 :SIVECGF Number of specific fragments extracted= 1 number of extra gaps= 2 total=106008 # 2ffmA.533.57 read from T0547.t06.many.frag # found chain 2ffmA in template set Warning: unaligning (T0547)E535 (2ffmA)F60 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PT 2ffmA 58 :MD T0547 536 :AIISIN 2ffmA 61 :ISVDKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=106010 # 1jhjA.533.89 read from T0547.t06.many.frag # found chain 1jhjA in training set Warning: unaligning (T0547)N541 (1jhjA)G99 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PTEAIISI 1jhjA 91 :PSKISVRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=106011 # 2brfA.533.47 read from T0547.t06.many.frag # found chain 2brfA in training set T0547 533 :PTEAIISIN 2brfA 48 :RTQVELVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=106012 # 1kjlA.533.101 read from T0547.t06.many.frag # found chain 1kjlA in template set Warning: unaligning (T0547)N541 (1kjlA)N214 because L (left) conformation "forbidden" or filtered. T0547 533 :PTEAIISI 1kjlA 206 :PDHFKVAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=106013 # 1xkpC.533.30 read from T0547.t06.many.frag # found chain 1xkpC in training set Warning: unaligning (T0547)T534 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xkpC)H32 T0547 535 :EAIISIN 1xkpC 33 :LVMLAPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=106014 # 1p5tA.533.65 read from T0547.t06.many.frag # found chain 1p5tA in template set Warning: unaligning (T0547)E535 (1p5tA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0547 533 :PT 1p5tA 66 :KV T0547 536 :AIISIN 1p5tA 69 :FSFEAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=106016 # 1xyiA.533.26 read from T0547.t06.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)P533 (1xyiA)G27 because S (epsilon) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1xyiA 28 :KAVSFTYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=106017 # 1dmhA.533.221 read from T0547.t06.many.frag # found chain 1dmhA in training set Warning: unaligning (T0547)E535 (1dmhA)H224 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1dmhA)S230 because E (beta_S) conformation "forbidden" or filtered. T0547 533 :PT 1dmhA 222 :PA T0547 536 :AIISI 1dmhA 225 :IHYFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=106019 # 1v04A.533.138 read from T0547.t06.many.frag # found chain 1v04A in template set Warning: unaligning (T0547)P533 (1v04A)S139 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1v04A 140 :TVEVFKFQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=106020 # 1q9uA.533.79 read from T0547.t06.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)P533 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1q9uA)K79 Warning: unaligning (T0547)E535 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q9uA)K79 Warning: unaligning (T0547)S539 (1q9uA)Y83 because Y (epsilon') conformation "forbidden" or filtered. T0547 536 :AII 1q9uA 80 :LVV T0547 540 :IN 1q9uA 84 :QE Number of specific fragments extracted= 2 number of extra gaps= 1 total=106022 # 2ayh.533.143 read from T0547.t06.many.frag # found chain 2ayh in training set T0547 533 :PTEAIISIN 2ayh 144 :FHTYAFDWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=106023 # 3proC.533.124 read from T0547.t06.many.frag # found chain 3proC in training set Warning: unaligning (T0547)P533 (3proC)S125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)T534 (3proC)N126 because L (left) conformation "forbidden" or filtered. T0547 535 :EAIISIN 3proC 127 :AVVVKVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=106024 # 1ud9A.534.211 read from T0547.t06.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)E542 (1ud9A)D220 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1ud9A 212 :DYVKVAFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=106025 # 1v5iB.534.2 read from T0547.t06.many.frag # found chain 1v5iB in training set Warning: unaligning (T0547)N541 (1v5iB)K10 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :TEAIISI 1v5iB 3 :GKFIVIF T0547 542 :E 1v5iB 11 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=106027 # 1w6sA.534.572 read from T0547.t06.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)E542 (1w6sA)D581 because T (delta_L) conformation "forbidden" or filtered. T0547 534 :TEAIISIN 1w6sA 573 :GGVVVFSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=106028 # 1ze3C.534.137 read from T0547.t06.many.frag # found chain 1ze3C in template set T0547 534 :TEAIISINE 1ze3C 138 :NSLTLINPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=106029 # 1xipA.534.246 read from T0547.t06.many.frag # found chain 1xipA in template set T0547 534 :TEAIISINE 1xipA 246 :KMYIIKHID Number of specific fragments extracted= 1 number of extra gaps= 0 total=106030 # 1rwhA.534.653 read from T0547.t06.many.frag # found chain 1rwhA in training set Warning: unaligning (T0547)E535 (1rwhA)A655 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :T 1rwhA 654 :T T0547 536 :AIISINE 1rwhA 656 :QSVEFKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=106032 # 1ujcA.534.131 read from T0547.t06.many.frag # found chain 1ujcA in template set Warning: unaligning (T0547)S539 (1ujcA)T137 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :TEAII 1ujcA 132 :AIASV T0547 540 :INE 1ujcA 138 :LDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=106034 # 2cz1B.534.177 read from T0547.t06.many.frag # found chain 2cz1B in training set T0547 534 :TEAIISINE 2cz1B 178 :PTYHVKFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106035 # 1jtgB.534.144 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)T534 (1jtgB)G145 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (1jtgB)S146 because Y (epsilon') conformation "forbidden" or filtered. T0547 536 :AIISINE 1jtgB 147 :AHLWFTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=106036 # 1l8bA.534.122 read from T0547.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)E535 (1l8bA)G151 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :T 1l8bA 150 :C T0547 536 :AIISINE 1l8bA 152 :AVVNVRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=106038 # 1sqeA.534.35 read from T0547.t06.many.frag # found chain 1sqeA in training set Warning: unaligning (T0547)E535 (1sqeA)Q52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1sqeA)T58 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :T 1sqeA 51 :Q T0547 536 :AIISI 1sqeA 53 :MFVTK T0547 542 :E 1sqeA 59 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=106041 # 1crzA.534.272 read from T0547.t06.many.frag # found chain 1crzA in template set T0547 534 :TEAIISINE 1crzA 279 :QNLAFTSDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=106042 # 1xyiA.534.27 read from T0547.t06.many.frag # found chain 1xyiA in training set T0547 534 :TEAIISINE 1xyiA 28 :KAVSFTYDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=106043 # 1zh1A.534.81 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E535 (1zh1A)Y118 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A536 (1zh1A)V119 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1zh1A)G125 because S (epsilon) conformation "forbidden" or filtered. T0547 534 :T 1zh1A 117 :E T0547 537 :IISIN 1zh1A 120 :EVTRV Number of specific fragments extracted= 2 number of extra gaps= 2 total=106045 # 1xkpC.534.31 read from T0547.t06.many.frag # found chain 1xkpC in training set Warning: unaligning (T0547)T534 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xkpC)H32 Warning: unaligning (T0547)N541 (1xkpC)H39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1xkpC)G40 because S (epsilon) conformation "forbidden" or filtered. T0547 535 :EAIISI 1xkpC 33 :LVMLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=106046 # 1q9uA.534.80 read from T0547.t06.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)E535 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q9uA)K79 Warning: unaligning (T0547)E542 (1q9uA)N86 because L (left) conformation "forbidden" or filtered. T0547 536 :AIISIN 1q9uA 80 :LVVYQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=106047 # 1ckmA.534.277 read from T0547.t06.many.frag # found chain 1ckmA in template set T0547 534 :TEAIISINE 1ckmA 278 :SIVECGFAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=106048 # 1o75A.534.228 read from T0547.t06.many.frag # found chain 1o75A in template set Warning: unaligning (T0547)N541 (1o75A)K236 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TEAIISI 1o75A 229 :AEASVML T0547 542 :E 1o75A 237 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=106050 # 1s4bP.534.379 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 534 :TEAIISINE 1s4bP 395 :RLYTARDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106051 # 1p5tA.534.66 read from T0547.t06.many.frag # found chain 1p5tA in template set Warning: unaligning (T0547)I538 (1p5tA)F71 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TEAI 1p5tA 67 :VMFS T0547 539 :SINE 1p5tA 72 :EAGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=106053 # 3proC.534.125 read from T0547.t06.many.frag # found chain 3proC in training set Warning: unaligning (T0547)T534 (3proC)N126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E535 (3proC)A127 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (3proC)D133 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (3proC)D134 because P (beta_P) conformation "forbidden" or filtered. T0547 536 :AIISI 3proC 128 :VVVKV Number of specific fragments extracted= 1 number of extra gaps= 2 total=106054 # 1hxxA.534.133 read from T0547.t06.many.frag # found chain 1hxxA in template set T0547 534 :TEAIISINE 1hxxA 134 :GGVATYRNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=106055 # 1jhjA.534.90 read from T0547.t06.many.frag # found chain 1jhjA in training set Warning: unaligning (T0547)N541 (1jhjA)G99 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :TEAIISI 1jhjA 92 :SKISVRV T0547 542 :E 1jhjA 100 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=106057 # 2brfA.534.48 read from T0547.t06.many.frag # found chain 2brfA in training set Warning: unaligning (T0547)A536 (2brfA)V51 because E (beta_S) conformation "forbidden" or filtered. T0547 534 :TE 2brfA 49 :TQ T0547 537 :IISINE 2brfA 52 :ELVADP Number of specific fragments extracted= 2 number of extra gaps= 1 total=106059 # 1wjxA.534.99 read from T0547.t06.many.frag # found chain 1wjxA in training set T0547 534 :TEAIISINE 1wjxA 100 :VPLKIYFNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=106060 # 1v04A.534.139 read from T0547.t06.many.frag # found chain 1v04A in template set T0547 534 :TEAIISINE 1v04A 140 :TVEVFKFQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=106061 # 2bbdA.534.230 read from T0547.t06.many.frag # found chain 2bbdA in template set Warning: unaligning (T0547)T534 (2bbdA)T232 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (2bbdA)R240 because P (beta_P) conformation "forbidden" or filtered. T0547 535 :EAIISIN 2bbdA 233 :EYELKIV Number of specific fragments extracted= 1 number of extra gaps= 2 total=106062 # 2ffmA.534.58 read from T0547.t06.many.frag # found chain 2ffmA in template set Warning: unaligning (T0547)E535 (2ffmA)F60 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :T 2ffmA 59 :D T0547 536 :AIISINE 2ffmA 61 :ISVDKEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=106064 # 1wruA.534.314 read from T0547.t06.many.frag # found chain 1wruA in template set Warning: unaligning (T0547)E535 (1wruA)K316 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1wruA)N322 because Y (epsilon') conformation "forbidden" or filtered. T0547 534 :T 1wruA 315 :S T0547 536 :AIISI 1wruA 317 :VTLIL T0547 542 :E 1wruA 323 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=106067 # 1vqoS.534.62 read from T0547.t06.many.frag # found chain 1vqoS in template set Warning: unaligning (T0547)N541 (1vqoS)S69 because P (beta_P) conformation "forbidden" or filtered. T0547 534 :TEAIISI 1vqoS 62 :KKAVVRL T0547 542 :E 1vqoS 70 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=106069 # 1xipA.535.247 read from T0547.t06.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)N541 (1xipA)I253 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1xipA)D254 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xipA)G255 because L (left) conformation "forbidden" or filtered. T0547 535 :EAIISI 1xipA 247 :MYIIKH Number of specific fragments extracted= 1 number of extra gaps= 1 total=106070 # 1w6sA.535.573 read from T0547.t06.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)E535 (1w6sA)G574 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1w6sA)D581 because T (delta_L) conformation "forbidden" or filtered. T0547 536 :AIISIN 1w6sA 575 :VVVFSL T0547 543 :K 1w6sA 582 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=106072 # 1ud9A.535.212 read from T0547.t06.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)N541 (1ud9A)A219 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1ud9A)D220 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1ud9A)Q221 because L (left) conformation "forbidden" or filtered. T0547 535 :EAIISI 1ud9A 213 :YVKVAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=106073 # 1v5iB.535.3 read from T0547.t06.many.frag # found chain 1v5iB in training set T0547 535 :EAIISINEK 1v5iB 4 :KFIVIFKND Number of specific fragments extracted= 1 number of extra gaps= 0 total=106074 # 1ze3C.535.138 read from T0547.t06.many.frag # found chain 1ze3C in template set Warning: unaligning (T0547)E542 (1ze3C)T146 because P (beta_P) conformation "forbidden" or filtered. T0547 535 :EAIISIN 1ze3C 139 :SLTLINP T0547 543 :K 1ze3C 147 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=106076 # 1ujcA.535.132 read from T0547.t06.many.frag # found chain 1ujcA in template set T0547 535 :EAIISINEK 1ujcA 133 :IASVTLDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=106077 # 2ayh.535.145 read from T0547.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)I537 (2ayh)A148 because Y (epsilon') conformation "forbidden" or filtered. T0547 535 :EA 2ayh 146 :TY T0547 538 :ISINEK 2ayh 149 :FDWQPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=106079 # 1rwhA.535.654 read from T0547.t06.many.frag # found chain 1rwhA in training set Warning: unaligning (T0547)E535 (1rwhA)A655 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1rwhA)A663 because G (3-10) conformation "forbidden" or filtered. T0547 536 :AIISINE 1rwhA 656 :QSVEFKT Number of specific fragments extracted= 1 number of extra gaps= 2 total=106080 # 1xkpC.535.32 read from T0547.t06.many.frag # found chain 1xkpC in training set Warning: unaligning (T0547)N541 (1xkpC)H39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1xkpC)G40 because S (epsilon) conformation "forbidden" or filtered. T0547 535 :EAIISI 1xkpC 33 :LVMLAP T0547 543 :K 1xkpC 41 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=106082 # 1q9uA.535.81 read from T0547.t06.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)E535 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q9uA)K79 Warning: unaligning (T0547)K543 (1q9uA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 536 :AIISINE 1q9uA 80 :LVVYQEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=106083 # 1crzA.535.273 read from T0547.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)E535 (1crzA)N280 because E (beta_S) conformation "forbidden" or filtered. T0547 536 :AIISINEK 1crzA 281 :LAFTSDQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=106084 # 1l8bA.535.123 read from T0547.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)E535 (1l8bA)G151 because Y (epsilon') conformation "forbidden" or filtered. T0547 536 :AIISINEK 1l8bA 152 :AVVNVRAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=106085 # 1zh1A.535.82 read from T0547.t06.many.frag # found chain 1zh1A in template set T0547 535 :EAIISINEK 1zh1A 118 :YVEVTRVGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=106086 # 1ydxA.535.299 read from T0547.t06.many.frag # found chain 1ydxA in template set T0547 535 :EAIISINEK 1ydxA 277 :SIALEPMNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=106087 # 1xyiA.535.28 read from T0547.t06.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)I538 (1xyiA)F32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. T0547 535 :EAI 1xyiA 29 :AVS T0547 539 :SINE 1xyiA 33 :TYDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=106089 # 1sqeA.535.36 read from T0547.t06.many.frag # found chain 1sqeA in training set Warning: unaligning (T0547)E535 (1sqeA)Q52 because Y (epsilon') conformation "forbidden" or filtered. T0547 536 :AIISINEK 1sqeA 53 :MFVTKTLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=106090 # 1p5tA.535.67 read from T0547.t06.many.frag # found chain 1p5tA in template set Warning: unaligning (T0547)E535 (1p5tA)M68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I538 (1p5tA)F71 because Y (epsilon') conformation "forbidden" or filtered. T0547 536 :AI 1p5tA 69 :FS T0547 539 :SINEK 1p5tA 72 :EAGRR Number of specific fragments extracted= 2 number of extra gaps= 2 total=106092 # 1jtgB.535.145 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)E535 (1jtgB)S146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1jtgB)D153 because L (left) conformation "forbidden" or filtered. T0547 536 :AIISIN 1jtgB 147 :AHLWFT T0547 543 :K 1jtgB 154 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=106094 # 1s4bP.535.380 read from T0547.t06.many.frag # found chain 1s4bP in template set T0547 535 :EAIISINEK 1s4bP 396 :LYTARDAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=106095 # 1w0pA.535.441 read from T0547.t06.many.frag # found chain 1w0pA in training set T0547 535 :EAIISINEK 1w0pA 442 :DYELQYSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106096 # 1ckmA.535.278 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)E542 (1ckmA)D286 because L (left) conformation "forbidden" or filtered. T0547 535 :EAIISIN 1ckmA 279 :IVECGFA T0547 543 :K 1ckmA 287 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=106098 # 2brfA.535.49 read from T0547.t06.many.frag # found chain 2brfA in training set T0547 535 :EAIISINEK 2brfA 50 :QVELVADPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=106099 # 2bbdA.535.231 read from T0547.t06.many.frag # found chain 2bbdA in template set T0547 535 :EAIISINEK 2bbdA 233 :EYELKIVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=106100 # 1wjxA.535.100 read from T0547.t06.many.frag # found chain 1wjxA in training set Warning: unaligning (T0547)N541 (1wjxA)N107 because P (beta_P) conformation "forbidden" or filtered. T0547 535 :EAIISI 1wjxA 101 :PLKIYF T0547 542 :EK 1wjxA 108 :ER Number of specific fragments extracted= 2 number of extra gaps= 1 total=106102 # 2ffmA.535.59 read from T0547.t06.many.frag # found chain 2ffmA in template set T0547 535 :EAIISINEK 2ffmA 60 :FISVDKEND Number of specific fragments extracted= 1 number of extra gaps= 0 total=106103 # 1s21A.535.188 read from T0547.t06.many.frag # found chain 1s21A in template set Warning: unaligning (T0547)K543 (1s21A)G195 because T (delta_L) conformation "forbidden" or filtered. T0547 535 :EAIISINE 1s21A 187 :ALIVTLPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=106104 # 1vqoS.535.63 read from T0547.t06.many.frag # found chain 1vqoS in template set Warning: unaligning (T0547)S539 (1vqoS)R67 because P (beta_P) conformation "forbidden" or filtered. T0547 535 :EAII 1vqoS 63 :KAVV T0547 540 :INEK 1vqoS 68 :LSED Number of specific fragments extracted= 2 number of extra gaps= 1 total=106106 # 3proC.535.126 read from T0547.t06.many.frag # found chain 3proC in training set Warning: unaligning (T0547)E535 (3proC)A127 because Y (epsilon') conformation "forbidden" or filtered. T0547 536 :AIISINEK 3proC 128 :VVVKVDDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=106107 # 1x31D.535.65 read from T0547.t06.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)A536 (1x31D)F67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I538 (1x31D)A69 because Y (epsilon') conformation "forbidden" or filtered. T0547 535 :E 1x31D 66 :W T0547 537 :I 1x31D 68 :N T0547 539 :SINEK 1x31D 70 :LRDTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=106110 # 1v04A.535.140 read from T0547.t06.many.frag # found chain 1v04A in template set T0547 535 :EAIISINEK 1v04A 141 :VEVFKFQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=106111 # 2ayh.536.146 read from T0547.t06.many.frag # found chain 2ayh in training set T0547 536 :AIISINEKG 2ayh 147 :YAFDWQPGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=106112 # 1ud9A.536.213 read from T0547.t06.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)A536 (1ud9A)V214 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1ud9A)Q221 because L (left) conformation "forbidden" or filtered. T0547 537 :IISINE 1ud9A 215 :KVAFAD T0547 544 :G 1ud9A 222 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=106114 # 1xipA.536.248 read from T0547.t06.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)E542 (1xipA)D254 because L (left) conformation "forbidden" or filtered. T0547 536 :AIISIN 1xipA 248 :YIIKHI T0547 543 :KG 1xipA 255 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=106116 # 1ujcA.536.133 read from T0547.t06.many.frag # found chain 1ujcA in template set T0547 536 :AIISINEKG 1ujcA 134 :ASVTLDESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=106117 # 1rwhA.536.655 read from T0547.t06.many.frag # found chain 1rwhA in training set T0547 536 :AIISINEKG 1rwhA 656 :QSVEFKTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=106118 # 1q9uA.536.82 read from T0547.t06.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)S539 (1q9uA)Y83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1q9uA)N86 because L (left) conformation "forbidden" or filtered. T0547 536 :AII 1q9uA 80 :LVV T0547 540 :IN 1q9uA 84 :QE T0547 543 :KG 1q9uA 87 :GT Number of specific fragments extracted= 3 number of extra gaps= 2 total=106121 # 1w0pA.536.442 read from T0547.t06.many.frag # found chain 1w0pA in training set T0547 536 :AIISINEKG 1w0pA 443 :YELQYSALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=106122 # 1ze3C.536.139 read from T0547.t06.many.frag # found chain 1ze3C in template set Warning: unaligning (T0547)E542 (1ze3C)T146 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1ze3C)Y148 because E (beta_S) conformation "forbidden" or filtered. T0547 536 :AIISIN 1ze3C 140 :LTLINP T0547 543 :K 1ze3C 147 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=106124 # 1x31D.536.66 read from T0547.t06.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)A536 (1x31D)F67 because Y (epsilon') conformation "forbidden" or filtered. T0547 537 :IISINEKG 1x31D 68 :NALRDTVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=106125 # 1wjxA.536.101 read from T0547.t06.many.frag # found chain 1wjxA in training set Warning: unaligning (T0547)S539 (1wjxA)Y105 because Y (epsilon') conformation "forbidden" or filtered. T0547 536 :AII 1wjxA 102 :LKI T0547 540 :INEKG 1wjxA 106 :FNERG Number of specific fragments extracted= 2 number of extra gaps= 1 total=106127 # 1tyv.536.523 read from T0547.t06.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)N541 (1tyv)K653 because P (beta_P) conformation "forbidden" or filtered. T0547 536 :AIISI 1tyv 648 :KALVK T0547 542 :EKG 1tyv 654 :PNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=106129 # 1crzA.536.274 read from T0547.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0547)G544 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. T0547 536 :AIISINEK 1crzA 281 :LAFTSDQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=106130 # 1l8bA.536.124 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 536 :AIISINEKG 1l8bA 152 :AVVNVRAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=106131 # 1xyiA.536.29 read from T0547.t06.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)I540 (1xyiA)Y34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1xyiA)D36 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. T0547 536 :AIIS 1xyiA 30 :VSFT T0547 541 :N 1xyiA 35 :D T0547 544 :G 1xyiA 38 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=106134 # 1zh1A.536.83 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)G544 (1zh1A)F127 because E (beta_S) conformation "forbidden" or filtered. T0547 536 :AIISINEK 1zh1A 119 :VEVTRVGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=106135 # 1wruA.536.316 read from T0547.t06.many.frag # found chain 1wruA in template set Warning: unaligning (T0547)N541 (1wruA)N322 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1wruA)D325 because G (3-10) conformation "forbidden" or filtered. T0547 536 :AIISI 1wruA 317 :VTLIL T0547 542 :EK 1wruA 323 :DQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=106137 # 1ahsA.536.105 read from T0547.t06.many.frag # found chain 1ahsA in template set Warning: unaligning (T0547)G544 (1ahsA)R239 because Y (epsilon') conformation "forbidden" or filtered. T0547 536 :AIISINEK 1ahsA 231 :VNVGNPGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=106138 # 1xkpC.536.33 read from T0547.t06.many.frag # found chain 1xkpC in training set Warning: unaligning (T0547)G544 (1xkpC)E42 because E (beta_S) conformation "forbidden" or filtered. T0547 536 :AIISINEK 1xkpC 34 :VMLAPHGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=106139 # 1i0vA.536.75 read from T0547.t06.many.frag # found chain 1i0vA in training set Warning: unaligning (T0547)A536 (1i0vA)D76 because P (beta_P) conformation "forbidden" or filtered. T0547 537 :IISINEKG 1i0vA 77 :RVVFNENN Number of specific fragments extracted= 1 number of extra gaps= 1 total=106140 # 1w6sA.536.574 read from T0547.t06.many.frag # found chain 1w6sA in training set Warning: unaligning (T0547)E542 (1w6sA)D581 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1w6sA)G582 because L (left) conformation "forbidden" or filtered. T0547 536 :AIISIN 1w6sA 575 :VVVFSL T0547 544 :G 1w6sA 583 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=106142 # 1y0hA.536.44 read from T0547.t06.many.frag # found chain 1y0hA in training set Warning: unaligning (T0547)A536 (1y0hA)Y42 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1y0hA)S47 because P (beta_P) conformation "forbidden" or filtered. T0547 537 :IISI 1y0hA 43 :DLYE T0547 542 :EKG 1y0hA 48 :ADG Number of specific fragments extracted= 2 number of extra gaps= 2 total=106144 # 1wv3A.536.126 read from T0547.t06.many.frag # found chain 1wv3A in training set T0547 536 :AIISINEKG 1wv3A 127 :VRIVHDKNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=106145 # 1ckmA.536.279 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)N541 (1ckmA)A285 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1ckmA)D286 because L (left) conformation "forbidden" or filtered. T0547 536 :AIISI 1ckmA 280 :VECGF T0547 543 :KG 1ckmA 287 :GT Number of specific fragments extracted= 2 number of extra gaps= 1 total=106147 # 2bbdA.536.232 read from T0547.t06.many.frag # found chain 2bbdA in template set T0547 536 :AIISINEKG 2bbdA 234 :YELKIVRGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106148 # 1orc.536.39 read from T0547.t06.many.frag # found chain 1orc in training set T0547 536 :AIISINEKG 1orc 40 :IFLTINADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=106149 # 1sqeA.536.37 read from T0547.t06.many.frag # found chain 1sqeA in training set Warning: unaligning (T0547)E542 (1sqeA)L59 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1sqeA)T61 because P (beta_P) conformation "forbidden" or filtered. T0547 536 :AIISIN 1sqeA 53 :MFVTKT T0547 543 :K 1sqeA 60 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=106151 # 1v5iB.536.4 read from T0547.t06.many.frag # found chain 1v5iB in training set T0547 536 :AIISINEKG 1v5iB 5 :FIVIFKNDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106152 # 1p5tA.536.68 read from T0547.t06.many.frag # found chain 1p5tA in template set T0547 536 :AIISINEKG 1p5tA 69 :FSFEAGRRC Number of specific fragments extracted= 1 number of extra gaps= 0 total=106153 # 3proC.536.127 read from T0547.t06.many.frag # found chain 3proC in training set Warning: unaligning (T0547)S539 (3proC)K131 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (3proC)A136 because G (3-10) conformation "forbidden" or filtered. T0547 536 :AII 3proC 128 :VVV T0547 540 :INEK 3proC 132 :VDDG Number of specific fragments extracted= 2 number of extra gaps= 2 total=106155 # 1ok0A.536.20 read from T0547.t06.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)A536 because of BadResidue code BAD_PEPTIDE at template residue (1ok0A)S21 T0547 537 :IISINEKG 1ok0A 22 :QADNGCAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=106156 # 2ayh.537.147 read from T0547.t06.many.frag # found chain 2ayh in training set T0547 537 :IISINEKGY 2ayh 148 :AFDWQPGYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=106157 # 1xipA.537.249 read from T0547.t06.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)E542 (1xipA)D254 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xipA)G255 because L (left) conformation "forbidden" or filtered. T0547 537 :IISIN 1xipA 249 :IIKHI T0547 544 :GY 1xipA 256 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=106159 # 1i0vA.537.76 read from T0547.t06.many.frag # found chain 1i0vA in training set T0547 537 :IISINEKGY 1i0vA 77 :RVVFNENNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=106160 # 1x31D.537.67 read from T0547.t06.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)N541 (1x31D)D72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1x31D)Y76 because T (delta_L) conformation "forbidden" or filtered. T0547 537 :IISI 1x31D 68 :NALR T0547 542 :EKG 1x31D 73 :TVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=106162 # 1fiqB.537.219 read from T0547.t06.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)E542 (1fiqB)P444 because P (beta_P) conformation "forbidden" or filtered. T0547 537 :IISIN 1fiqB 439 :RVLFQ T0547 543 :KGY 1fiqB 445 :GSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=106164 # 1wjxA.537.102 read from T0547.t06.many.frag # found chain 1wjxA in training set Warning: unaligning (T0547)I537 (1wjxA)K103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S539 (1wjxA)Y105 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :I 1wjxA 104 :I T0547 540 :INEKGY 1wjxA 106 :FNERGY Number of specific fragments extracted= 2 number of extra gaps= 2 total=106166 # 1ckmA.537.280 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)E542 (1ckmA)D286 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1ckmA)T288 because E (beta_S) conformation "forbidden" or filtered. T0547 537 :IISIN 1ckmA 281 :ECGFA T0547 543 :K 1ckmA 287 :G T0547 545 :Y 1ckmA 289 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=106169 # 1w0pA.537.443 read from T0547.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)G544 (1w0pA)N451 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1w0pA)H452 because L (left) conformation "forbidden" or filtered. T0547 537 :IISINEK 1w0pA 444 :ELQYSAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=106170 # 1ud9A.537.214 read from T0547.t06.many.frag # found chain 1ud9A in training set Warning: unaligning (T0547)N541 (1ud9A)A219 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1ud9A)Q221 because L (left) conformation "forbidden" or filtered. T0547 537 :IISI 1ud9A 215 :KVAF T0547 542 :E 1ud9A 220 :D T0547 544 :GY 1ud9A 222 :KP Number of specific fragments extracted= 3 number of extra gaps= 2 total=106173 # 1ujcA.537.134 read from T0547.t06.many.frag # found chain 1ujcA in template set Warning: unaligning (T0547)K543 (1ujcA)S141 because G (3-10) conformation "forbidden" or filtered. T0547 537 :IISINE 1ujcA 135 :SVTLDE T0547 544 :GY 1ujcA 142 :GN Number of specific fragments extracted= 2 number of extra gaps= 1 total=106175 # 1tyv.537.524 read from T0547.t06.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)N541 (1tyv)K653 because P (beta_P) conformation "forbidden" or filtered. T0547 537 :IISI 1tyv 649 :ALVK T0547 542 :EKGY 1tyv 654 :PNGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=106177 # 1wruA.537.317 read from T0547.t06.many.frag # found chain 1wruA in template set Warning: unaligning (T0547)G544 (1wruA)D325 because G (3-10) conformation "forbidden" or filtered. T0547 537 :IISINEK 1wruA 318 :TLILNDQ T0547 545 :Y 1wruA 326 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=106179 # 1rwhA.537.656 read from T0547.t06.many.frag # found chain 1rwhA in training set T0547 537 :IISINEKGY 1rwhA 657 :SVEFKTAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=106180 # 1l8bA.537.125 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 537 :IISINEKGY 1l8bA 153 :VVNVRAKGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=106181 # 1wckA.537.189 read from T0547.t06.many.frag # found chain 1wckA in training set T0547 537 :IISINEKGY 1wckA 190 :EVIVTGLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106182 # 1zh1A.537.84 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)G544 (1zh1A)F127 because E (beta_S) conformation "forbidden" or filtered. T0547 537 :IISINEK 1zh1A 120 :EVTRVGD T0547 545 :Y 1zh1A 128 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=106184 # 1q9uA.537.83 read from T0547.t06.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)E542 (1q9uA)N86 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1q9uA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 537 :IISIN 1q9uA 81 :VVYQE T0547 544 :GY 1q9uA 88 :TT Number of specific fragments extracted= 2 number of extra gaps= 1 total=106186 # 1oh0A.537.103 read from T0547.t06.many.frag # found chain 1oh0A in training set T0547 537 :IISINEKGY 1oh0A 104 :VMRFDEHGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=106187 # 1z6nA.537.113 read from T0547.t06.many.frag # found chain 1z6nA in training set T0547 537 :IISINEKGY 1z6nA 114 :VLVLDEEFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=106188 # 2erfA.537.132 read from T0547.t06.many.frag # found chain 2erfA in training set T0547 537 :IISINEKGY 2erfA 139 :TLFVQEDRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106189 # 1jtgB.537.147 read from T0547.t06.many.frag # found chain 1jtgB in template set Warning: unaligning (T0547)K543 (1jtgB)G154 because T (delta_L) conformation "forbidden" or filtered. T0547 537 :IISINE 1jtgB 148 :HLWFTD T0547 544 :GY 1jtgB 155 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=106191 # 2f2hA.537.714 read from T0547.t06.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)E542 (2f2hA)G720 because S (epsilon) conformation "forbidden" or filtered. T0547 537 :IISIN 2f2hA 715 :KAART T0547 543 :KGY 2f2hA 721 :NTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=106193 # 1pea.537.341 read from T0547.t06.many.frag # found chain 1pea in template set T0547 537 :IISINEKGY 1pea 342 :IAEIDARGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106194 # 1xyiA.537.30 read from T0547.t06.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. T0547 537 :IISINE 1xyiA 31 :SFTYDD T0547 544 :GY 1xyiA 38 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=106196 # 1xkpC.537.34 read from T0547.t06.many.frag # found chain 1xkpC in training set Warning: unaligning (T0547)E542 (1xkpC)G40 because S (epsilon) conformation "forbidden" or filtered. T0547 537 :IISIN 1xkpC 35 :MLAPH T0547 543 :KGY 1xkpC 41 :SEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=106198 # 2f86B.537.114 read from T0547.t06.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)E542 (2f86B)Q459 because L (left) conformation "forbidden" or filtered. T0547 537 :IISIN 2f86B 454 :VWSKK T0547 543 :KGY 2f86B 460 :GRW Number of specific fragments extracted= 2 number of extra gaps= 1 total=106200 # 1dy5A.537.106 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N541 (1dy5A)E111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1dy5A)G112 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 537 :IISI 1dy5A 107 :IVAC T0547 543 :K 1dy5A 113 :N T0547 545 :Y 1dy5A 115 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=106203 # 1ws8A.537.36 read from T0547.t06.many.frag # found chain 1ws8A in training set T0547 537 :IISINEKGY 1ws8A 37 :LFNYNNKFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=106204 # 1wubA.537.33 read from T0547.t06.many.frag # found chain 1wubA in training set Warning: unaligning (T0547)I537 (1wubA)S34 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :ISINEKGY 1wubA 35 :VETDEAGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=106205 # 1s12A.537.2 read from T0547.t06.many.frag # found chain 1s12A in template set Warning: unaligning (T0547)N541 (1s12A)T7 because Y (epsilon') conformation "forbidden" or filtered. T0547 537 :IISI 1s12A 3 :KVTV T0547 542 :EKGY 1s12A 8 :NSFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=106207 # 1xipA.538.250 read from T0547.t06.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)E542 (1xipA)D254 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1xipA)S256 because E (beta_S) conformation "forbidden" or filtered. T0547 538 :ISIN 1xipA 250 :IKHI T0547 543 :K 1xipA 255 :G T0547 545 :YE 1xipA 257 :AS Number of specific fragments extracted= 3 number of extra gaps= 2 total=106210 # 2ayh.538.148 read from T0547.t06.many.frag # found chain 2ayh in training set T0547 538 :ISINEKGYE 2ayh 149 :FDWQPGYIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=106211 # 1fiqB.538.220 read from T0547.t06.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)N541 (1fiqB)Q443 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1fiqB)S446 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1fiqB)Q448 because P (beta_P) conformation "forbidden" or filtered. T0547 538 :ISI 1fiqB 440 :VLF T0547 542 :E 1fiqB 444 :P T0547 545 :Y 1fiqB 447 :M Number of specific fragments extracted= 3 number of extra gaps= 3 total=106214 # 1ckmA.538.281 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)K543 (1ckmA)G287 because T (delta_L) conformation "forbidden" or filtered. T0547 538 :ISINE 1ckmA 282 :CGFAD T0547 544 :GYE 1ckmA 288 :TWK Number of specific fragments extracted= 2 number of extra gaps= 1 total=106216 # 1x31D.538.68 read from T0547.t06.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)Y545 (1x31D)Y76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1x31D)E77 because P (beta_P) conformation "forbidden" or filtered. T0547 538 :ISINEKG 1x31D 69 :ALRDTVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=106217 # 1q9uA.538.84 read from T0547.t06.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)S539 (1q9uA)Y83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1q9uA)N86 because L (left) conformation "forbidden" or filtered. T0547 538 :I 1q9uA 82 :V T0547 540 :IN 1q9uA 84 :QE T0547 543 :KGYE 1q9uA 87 :GTTK Number of specific fragments extracted= 3 number of extra gaps= 2 total=106220 # 2f86B.538.115 read from T0547.t06.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)E542 (2f86B)Q459 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (2f86B)G460 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2f86B)R461 because P (beta_P) conformation "forbidden" or filtered. T0547 538 :ISIN 2f86B 455 :WSKK T0547 545 :YE 2f86B 462 :WV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106222 # 1wjxA.538.103 read from T0547.t06.many.frag # found chain 1wjxA in training set Warning: unaligning (T0547)S539 (1wjxA)Y105 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1wjxA)N107 because P (beta_P) conformation "forbidden" or filtered. T0547 538 :I 1wjxA 104 :I T0547 540 :I 1wjxA 106 :F T0547 542 :EKGYE 1wjxA 108 :ERGYA Number of specific fragments extracted= 3 number of extra gaps= 2 total=106225 # 1xyiA.538.31 read from T0547.t06.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)I540 (1xyiA)Y34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. T0547 538 :IS 1xyiA 32 :FT T0547 541 :NE 1xyiA 35 :DD T0547 544 :GYE 1xyiA 38 :GKT Number of specific fragments extracted= 3 number of extra gaps= 2 total=106228 # 1l8bA.538.126 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 538 :ISINEKGYE 1l8bA 154 :VNVRAKGDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=106229 # 1of5A.538.183 read from T0547.t06.many.frag # found chain 1of5A in template set Warning: unaligning (T0547)N541 (1of5A)M454 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1of5A)V458 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :ISI 1of5A 451 :IVP T0547 542 :EKG 1of5A 455 :NNS T0547 546 :E 1of5A 459 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=106232 # 1zh1A.538.85 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)G544 (1zh1A)F127 because E (beta_S) conformation "forbidden" or filtered. T0547 538 :ISINEK 1zh1A 121 :VTRVGD T0547 545 :YE 1zh1A 128 :HY Number of specific fragments extracted= 2 number of extra gaps= 1 total=106234 # 2f2hA.538.715 read from T0547.t06.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)E542 (2f2hA)G720 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2f2hA)T722 because E (beta_S) conformation "forbidden" or filtered. T0547 538 :ISIN 2f2hA 716 :AART T0547 543 :K 2f2hA 721 :N T0547 545 :YE 2f2hA 723 :IT Number of specific fragments extracted= 3 number of extra gaps= 2 total=106237 # 1tyv.538.525 read from T0547.t06.many.frag # found chain 1tyv in training set T0547 538 :ISINEKGYE 1tyv 650 :LVKKPNGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106238 # 2et1A.538.76 read from T0547.t06.many.frag # found chain 2et1A in training set Warning: unaligning (T0547)N541 (2et1A)A80 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 because of BadResidue code BAD_PEPTIDE in next template residue (2et1A)N85 Warning: unaligning (T0547)E546 because of BadResidue code BAD_PEPTIDE at template residue (2et1A)N85 T0547 538 :ISI 2et1A 77 :VDF T0547 542 :EKG 2et1A 81 :PGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=106240 # 1i0vA.538.77 read from T0547.t06.many.frag # found chain 1i0vA in training set T0547 538 :ISINEKGYE 1i0vA 78 :VVFNENNQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106241 # 1xkpC.538.35 read from T0547.t06.many.frag # found chain 1xkpC in training set Warning: unaligning (T0547)E542 (1xkpC)G40 because S (epsilon) conformation "forbidden" or filtered. T0547 538 :ISIN 1xkpC 36 :LAPH T0547 543 :KGYE 1xkpC 41 :SELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106243 # 1dy5A.538.107 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)E542 (1dy5A)G112 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1dy5A)N113 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 538 :ISIN 1dy5A 108 :VACE T0547 545 :YE 1dy5A 115 :YV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106245 # 1oh0A.538.104 read from T0547.t06.many.frag # found chain 1oh0A in training set Warning: unaligning (T0547)N541 (1oh0A)D108 because P (beta_P) conformation "forbidden" or filtered. T0547 538 :ISI 1oh0A 105 :MRF T0547 542 :EKGYE 1oh0A 109 :EHGRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=106247 # 1q9jA.538.380 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)S539 (1q9jA)A382 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1q9jA)A385 because L (left) conformation "forbidden" or filtered. T0547 538 :I 1q9jA 381 :C T0547 540 :IN 1q9jA 383 :VY T0547 543 :KGYE 1q9jA 386 :GQLI Number of specific fragments extracted= 3 number of extra gaps= 2 total=106250 # 1hf2A.538.188 read from T0547.t06.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)S539 (1hf2A)H190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1hf2A)G193 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1hf2A)R195 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :I 1hf2A 189 :A T0547 540 :IN 1hf2A 191 :VK T0547 543 :K 1hf2A 194 :N T0547 545 :YE 1hf2A 196 :IV Number of specific fragments extracted= 4 number of extra gaps= 3 total=106254 # 1ws8A.538.37 read from T0547.t06.many.frag # found chain 1ws8A in training set Warning: unaligning (T0547)E546 (1ws8A)N46 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :ISINEKGY 1ws8A 38 :FNYNNKFH Number of specific fragments extracted= 1 number of extra gaps= 1 total=106255 # 1wruA.538.318 read from T0547.t06.many.frag # found chain 1wruA in template set Warning: unaligning (T0547)G544 (1wruA)D325 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1wruA)G326 because S (epsilon) conformation "forbidden" or filtered. T0547 538 :ISINEK 1wruA 319 :LILNDQ T0547 546 :E 1wruA 327 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=106257 # 1w0pA.538.444 read from T0547.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0547)G544 (1w0pA)N451 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1w0pA)H452 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1w0pA)T453 because Y (epsilon') conformation "forbidden" or filtered. T0547 538 :ISINEK 1w0pA 445 :LQYSAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=106258 # 1u8xX.538.384 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)N541 (1u8xX)G365 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1u8xX)E370 because D (zeta) conformation "forbidden" or filtered. T0547 538 :ISI 1u8xX 362 :CIV T0547 542 :EKGY 1u8xX 366 :SNGP Number of specific fragments extracted= 2 number of extra gaps= 2 total=106260 # 1s12A.538.3 read from T0547.t06.many.frag # found chain 1s12A in template set T0547 538 :ISINEKGYE 1s12A 4 :VTVTNSFFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=106261 # 1ub0A.538.184 read from T0547.t06.many.frag # found chain 1ub0A in template set T0547 538 :ISINEKGYE 1ub0A 185 :LLATRGGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106262 # 1c1yB.538.5 read from T0547.t06.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)E542 (1c1yB)N64 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1c1yB)K65 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1c1yB)T68 because E (beta_S) conformation "forbidden" or filtered. T0547 538 :ISIN 1c1yB 60 :VFLP T0547 544 :GY 1c1yB 66 :QR Number of specific fragments extracted= 2 number of extra gaps= 2 total=106264 1qqqA expands to /projects/compbio/data/pdb/1qqq.pdb.gz 1qqqA:Bad short name: CN for alphabet: pdb_atoms Bad short name: ON1 for alphabet: pdb_atoms Bad short name: ON2 for alphabet: pdb_atoms # 1qqqA.538.151 read from T0547.t06.many.frag # adding 1qqqA to template set # found chain 1qqqA in template set T0547 538 :ISINEKGYE 1qqqA 152 :FYVADGKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=106265 # 2basA.538.349 read from T0547.t06.many.frag # found chain 2basA in template set Warning: unaligning (T0547)E542 (2basA)D330 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2basA)E332 because E (beta_S) conformation "forbidden" or filtered. T0547 538 :ISIN 2basA 326 :VFKQ T0547 543 :K 2basA 331 :G T0547 545 :YE 2basA 333 :WI Number of specific fragments extracted= 3 number of extra gaps= 2 total=106268 # 1xipA.539.251 read from T0547.t06.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)N541 (1xipA)I253 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xipA)G255 because L (left) conformation "forbidden" or filtered. T0547 539 :SI 1xipA 251 :KH T0547 542 :E 1xipA 254 :D T0547 544 :GYEV 1xipA 256 :SASF Number of specific fragments extracted= 3 number of extra gaps= 2 total=106271 # 1ckmA.539.282 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)K543 (1ckmA)G287 because T (delta_L) conformation "forbidden" or filtered. T0547 539 :SINE 1ckmA 283 :GFAD T0547 544 :GYEV 1ckmA 288 :TWKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=106273 # 1fiqB.539.221 read from T0547.t06.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. T0547 539 :SINE 1fiqB 441 :LFQP T0547 544 :GYEV 1fiqB 446 :SMQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106275 # 1of5A.539.184 read from T0547.t06.many.frag # found chain 1of5A in template set Warning: unaligning (T0547)N541 (1of5A)M454 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1of5A)N455 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1of5A)S457 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1of5A)V458 because Y (epsilon') conformation "forbidden" or filtered. T0547 539 :SI 1of5A 452 :VP T0547 543 :K 1of5A 456 :N T0547 546 :EV 1of5A 459 :II Number of specific fragments extracted= 3 number of extra gaps= 2 total=106278 # 2f86B.539.116 read from T0547.t06.many.frag # found chain 2f86B in template set T0547 539 :SINEKGYEV 2f86B 456 :SKKQGRWVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=106279 # 1zh1A.539.86 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E542 (1zh1A)G125 because S (epsilon) conformation "forbidden" or filtered. T0547 539 :SIN 1zh1A 122 :TRV T0547 543 :KGYEV 1zh1A 126 :DFHYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106281 # 2f2hA.539.716 read from T0547.t06.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)G544 (2f2hA)T722 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SINEK 2f2hA 717 :ARTGN T0547 545 :YEV 2f2hA 723 :ITV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106283 # 1q9uA.539.85 read from T0547.t06.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)K543 (1q9uA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 539 :SINE 1q9uA 83 :YQEN T0547 544 :GYEV 1q9uA 88 :TTKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=106285 # 1xkpC.539.36 read from T0547.t06.many.frag # found chain 1xkpC in training set T0547 539 :SINEKGYEV 1xkpC 37 :APHGSELVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106286 # 1s12A.539.4 read from T0547.t06.many.frag # found chain 1s12A in template set Warning: unaligning (T0547)N541 (1s12A)T7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1s12A)E12 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SI 1s12A 5 :TV T0547 542 :EKGY 1s12A 8 :NSFF T0547 547 :V 1s12A 13 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=106289 # 2ayh.539.149 read from T0547.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0547)G544 (2ayh)Y155 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (2ayh)K157 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SINEK 2ayh 150 :DWQPG T0547 545 :Y 2ayh 156 :I T0547 547 :V 2ayh 158 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=106292 # 1hf2A.539.189 read from T0547.t06.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)S539 (1hf2A)H190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)N541 (1hf2A)K192 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :I 1hf2A 191 :V T0547 542 :EKGYEV 1hf2A 193 :GNRIVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=106294 # 1x31D.539.69 read from T0547.t06.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G544 (1x31D)S75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1x31D)E77 because P (beta_P) conformation "forbidden" or filtered. T0547 539 :SINEK 1x31D 70 :LRDTV T0547 545 :Y 1x31D 76 :Y T0547 547 :V 1x31D 78 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=106297 # 1l8bA.539.127 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 539 :SINEKGYEV 1l8bA 155 :NVRAKGDKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=106298 # 1q9jA.539.381 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)S539 (1q9jA)A382 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1q9jA)A385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1q9jA)G386 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1q9jA)Q387 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :IN 1q9jA 383 :VY T0547 545 :YEV 1q9jA 388 :LII Number of specific fragments extracted= 2 number of extra gaps= 2 total=106300 # 1u8xX.539.385 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)N541 (1u8xX)G365 because Y (epsilon') conformation "forbidden" or filtered. T0547 539 :SI 1u8xX 363 :IV T0547 542 :EKGYEV 1u8xX 366 :SNGPEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=106302 # 1dy5A.539.108 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N541 (1dy5A)E111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1dy5A)G112 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 539 :SI 1dy5A 109 :AC T0547 543 :K 1dy5A 113 :N T0547 545 :YEV 1dy5A 115 :YVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=106305 # 1c1yB.539.6 read from T0547.t06.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)S539 (1c1yB)F61 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1c1yB)N64 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1c1yB)K65 because L (left) conformation "forbidden" or filtered. T0547 540 :IN 1c1yB 62 :LP T0547 544 :GYEV 1c1yB 66 :QRTV Number of specific fragments extracted= 2 number of extra gaps= 2 total=106307 # 2et1A.539.77 read from T0547.t06.many.frag # found chain 2et1A in training set Warning: unaligning (T0547)Y545 because of BadResidue code BAD_PEPTIDE in next template residue (2et1A)N85 Warning: unaligning (T0547)E546 because of BadResidue code BAD_PEPTIDE at template residue (2et1A)N85 T0547 539 :SINEKG 2et1A 78 :DFAPGG T0547 547 :V 2et1A 86 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=106309 # 1u9iA.539.470 read from T0547.t06.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)N541 (1u9iA)S473 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1u9iA)G476 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1u9iA)D478 because D (zeta) conformation "forbidden" or filtered. T0547 539 :SI 1u9iA 471 :MI T0547 542 :EK 1u9iA 474 :DK T0547 545 :Y 1u9iA 477 :P T0547 547 :V 1u9iA 479 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=106313 # 1xyiA.539.32 read from T0547.t06.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V547 (1xyiA)G41 because Y (epsilon') conformation "forbidden" or filtered. T0547 539 :SINE 1xyiA 33 :TYDD T0547 544 :GYE 1xyiA 38 :GKT Number of specific fragments extracted= 2 number of extra gaps= 2 total=106315 # 1mk0A.539.8 read from T0547.t06.many.frag # found chain 1mk0A in training set Warning: unaligning (T0547)E546 (1mk0A)V16 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SINEKGY 1mk0A 9 :KNTLNNK T0547 547 :V 1mk0A 17 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=106317 # 1ub0A.539.185 read from T0547.t06.many.frag # found chain 1ub0A in template set T0547 539 :SINEKGYEV 1ub0A 186 :LATRGGVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=106318 # 1zpsA.539.28 read from T0547.t06.many.frag # found chain 1zpsA in training set T0547 539 :SINEKGYEV 1zpsA 29 :QDHETGEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106319 # 1tyv.539.526 read from T0547.t06.many.frag # found chain 1tyv in training set Warning: unaligning (T0547)K543 (1tyv)N655 because G (3-10) conformation "forbidden" or filtered. T0547 539 :SINE 1tyv 651 :VKKP T0547 544 :GYEV 1tyv 656 :GELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106321 # 1wjxA.539.104 read from T0547.t06.many.frag # found chain 1wjxA in training set Warning: unaligning (T0547)S539 (1wjxA)Y105 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :INEKGYEV 1wjxA 106 :FNERGYAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=106322 # 1qqqA.539.152 read from T0547.t06.many.frag # found chain 1qqqA in template set Warning: unaligning (T0547)E542 (1qqqA)D156 because L (left) conformation "forbidden" or filtered. T0547 539 :SIN 1qqqA 153 :YVA T0547 543 :KGYEV 1qqqA 157 :GKLSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=106324 # 1oh0A.539.105 read from T0547.t06.many.frag # found chain 1oh0A in training set T0547 539 :SINEKGYEV 1oh0A 106 :RFDEHGRIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=106325 # 1xksA.539.233 read from T0547.t06.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)E546 (1xksA)K305 because E (beta_S) conformation "forbidden" or filtered. T0547 539 :SINEKGY 1xksA 298 :ELDDSSE T0547 547 :V 1xksA 306 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=106327 # 2basA.539.350 read from T0547.t06.many.frag # found chain 2basA in template set Warning: unaligning (T0547)E542 (2basA)D330 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (2basA)G331 because T (delta_L) conformation "forbidden" or filtered. T0547 539 :SIN 2basA 327 :FKQ T0547 544 :GYEV 2basA 332 :EWIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=106329 # 1zh1A.540.87 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E542 (1zh1A)G125 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1zh1A)Y129 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :IN 1zh1A 123 :RV T0547 543 :KGY 1zh1A 126 :DFH T0547 547 :VE 1zh1A 130 :VT Number of specific fragments extracted= 3 number of extra gaps= 2 total=106332 # 1xipA.540.252 read from T0547.t06.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)N541 (1xipA)I253 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1xipA)D254 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xipA)G255 because L (left) conformation "forbidden" or filtered. T0547 540 :I 1xipA 252 :H T0547 544 :GYEVE 1xipA 256 :SASFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=106334 # 1of5A.540.185 read from T0547.t06.many.frag # found chain 1of5A in template set Warning: unaligning (T0547)G544 (1of5A)S457 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :INEK 1of5A 453 :PMNN T0547 545 :YEVE 1of5A 458 :VIIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=106336 # 2f86B.540.117 read from T0547.t06.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)K543 (2f86B)G460 because T (delta_L) conformation "forbidden" or filtered. T0547 540 :INE 2f86B 457 :KKQ T0547 544 :GYEVE 2f86B 461 :RWVCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106338 # 1ckmA.540.283 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)E542 (1ckmA)D286 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1ckmA)G287 because T (delta_L) conformation "forbidden" or filtered. T0547 540 :IN 1ckmA 284 :FA T0547 544 :GYEVE 1ckmA 288 :TWKYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=106340 # 1fiqB.540.222 read from T0547.t06.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)N541 (1fiqB)Q443 because P (beta_P) conformation "forbidden" or filtered. T0547 540 :I 1fiqB 442 :F T0547 542 :EKGYEVE 1fiqB 444 :PGSMQVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=106342 # 1q9jA.540.382 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)K543 (1q9jA)G386 because L (left) conformation "forbidden" or filtered. T0547 540 :INE 1q9jA 383 :VYA T0547 544 :GYEVE 1q9jA 387 :QLIIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=106344 # 1hf2A.540.190 read from T0547.t06.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)E542 (1hf2A)G193 because S (epsilon) conformation "forbidden" or filtered. T0547 540 :IN 1hf2A 191 :VK T0547 543 :KGYEVE 1hf2A 194 :NRIVIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=106346 # 2f2hA.540.717 read from T0547.t06.many.frag # found chain 2f2hA in template set Warning: unaligning (T0547)E542 (2f2hA)G720 because S (epsilon) conformation "forbidden" or filtered. T0547 540 :IN 2f2hA 718 :RT T0547 543 :KGYEVE 2f2hA 721 :NTITVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=106348 # 1x31D.540.70 read from T0547.t06.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)Y545 (1x31D)Y76 because T (delta_L) conformation "forbidden" or filtered. T0547 540 :INEKG 1x31D 71 :RDTVS T0547 546 :EVE 1x31D 77 :EFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=106350 # 1u9iA.540.471 read from T0547.t06.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)N541 (1u9iA)S473 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :I 1u9iA 472 :I T0547 542 :EKGYEVE 1u9iA 474 :DKGPDIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=106352 # 1s12A.540.5 read from T0547.t06.many.frag # found chain 1s12A in template set Warning: unaligning (T0547)N541 (1s12A)T7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1s12A)F10 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :I 1s12A 6 :V T0547 542 :EK 1s12A 8 :NS T0547 545 :YEVE 1s12A 11 :FEVT Number of specific fragments extracted= 3 number of extra gaps= 2 total=106355 # 1mk0A.540.9 read from T0547.t06.many.frag # found chain 1mk0A in training set T0547 540 :INEKGYEVE 1mk0A 10 :NTLNNKVYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106356 # 1xkpC.540.37 read from T0547.t06.many.frag # found chain 1xkpC in training set Warning: unaligning (T0547)E542 (1xkpC)G40 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1xkpC)R46 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :IN 1xkpC 38 :PH T0547 543 :KGYEV 1xkpC 41 :SELVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=106358 # 1dy5A.540.109 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N541 (1dy5A)E111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1dy5A)G112 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 540 :I 1dy5A 110 :C T0547 543 :K 1dy5A 113 :N T0547 545 :YEVE 1dy5A 115 :YVPV Number of specific fragments extracted= 3 number of extra gaps= 2 total=106361 # 1c1yB.540.7 read from T0547.t06.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)E542 (1c1yB)N64 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1c1yB)K65 because L (left) conformation "forbidden" or filtered. T0547 540 :IN 1c1yB 62 :LP T0547 544 :GYEVE 1c1yB 66 :QRTVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106363 # 1q9uA.540.86 read from T0547.t06.many.frag # found chain 1q9uA in training set Warning: unaligning (T0547)E542 (1q9uA)N86 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1q9uA)G87 because T (delta_L) conformation "forbidden" or filtered. T0547 540 :IN 1q9uA 84 :QE T0547 544 :GYEVE 1q9uA 88 :TTKIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=106365 # 1zeqX.540.69 read from T0547.t06.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)N541 (1zeqX)Q75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1zeqX)G76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1zeqX)N77 because L (left) conformation "forbidden" or filtered. T0547 540 :I 1zeqX 74 :Q T0547 544 :GYEVE 1zeqX 78 :LSLLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=106367 # 1i58A.540.86 read from T0547.t06.many.frag # found chain 1i58A in training set Warning: unaligning (T0547)E542 (1i58A)G440 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1i58A)N441 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1i58A)N442 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1i58A)E446 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :IN 1i58A 438 :HE T0547 545 :YEV 1i58A 443 :VVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=106369 # 1xksA.540.234 read from T0547.t06.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)N541 (1xksA)D300 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1xksA)S303 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :I 1xksA 299 :L T0547 542 :EK 1xksA 301 :DS T0547 545 :YEVE 1xksA 304 :EKHA Number of specific fragments extracted= 3 number of extra gaps= 2 total=106372 # 2et1A.540.78 read from T0547.t06.many.frag # found chain 2et1A in training set Warning: unaligning (T0547)K543 (2et1A)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 because of BadResidue code BAD_PEPTIDE in next template residue (2et1A)N85 Warning: unaligning (T0547)E546 because of BadResidue code BAD_PEPTIDE at template residue (2et1A)N85 Warning: unaligning (T0547)E548 (2et1A)P87 because P (beta_P) conformation "forbidden" or filtered. T0547 540 :INE 2et1A 79 :FAP T0547 544 :G 2et1A 83 :G T0547 547 :V 2et1A 86 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=106375 # 1ub0A.540.186 read from T0547.t06.many.frag # found chain 1ub0A in template set Warning: unaligning (T0547)G544 (1ub0A)G191 because Y (epsilon') conformation "forbidden" or filtered. T0547 540 :INEK 1ub0A 187 :ATRG T0547 545 :YEVE 1ub0A 192 :VLRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=106377 # 1l8bA.540.128 read from T0547.t06.many.frag # found chain 1l8bA in training set T0547 540 :INEKGYEVE 1l8bA 156 :VRAKGDKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106378 # 1vjlA.540.91 read from T0547.t06.many.frag # found chain 1vjlA in template set Warning: unaligning (T0547)E542 (1vjlA)D82 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1vjlA)N83 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1vjlA)T84 because E (beta_S) conformation "forbidden" or filtered. T0547 540 :IN 1vjlA 80 :LK T0547 545 :YEVE 1vjlA 85 :FYAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=106380 # 1wvqA.540.126 read from T0547.t06.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)N541 (1wvqA)E128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1wvqA)E130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1wvqA)R131 because D (zeta) conformation "forbidden" or filtered. T0547 540 :I 1wvqA 127 :V T0547 542 :E 1wvqA 129 :P T0547 545 :YEVE 1wvqA 132 :RGVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=106383 # 1p90A.540.34 read from T0547.t06.many.frag # found chain 1p90A in training set T0547 540 :INEKGYEVE 1p90A 133 :VSAKDASLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106384 # 1xyiA.540.33 read from T0547.t06.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. T0547 540 :INE 1xyiA 34 :YDD T0547 544 :GYEVE 1xyiA 38 :GKTGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=106386 # 1u8xX.540.386 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)N541 (1u8xX)G365 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1u8xX)I372 because P (beta_P) conformation "forbidden" or filtered. T0547 540 :I 1u8xX 364 :V T0547 542 :EKGYEV 1u8xX 366 :SNGPEP Number of specific fragments extracted= 2 number of extra gaps= 2 total=106388 # 1f39A.540.48 read from T0547.t06.many.frag # found chain 1f39A in template set Warning: unaligning (T0547)K543 (1f39A)D187 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1f39A)E188 because P (beta_P) conformation "forbidden" or filtered. T0547 540 :INE 1f39A 184 :LGG T0547 545 :YEVE 1f39A 189 :FTFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=106390 # 1zpsA.540.29 read from T0547.t06.many.frag # found chain 1zpsA in training set T0547 540 :INEKGYEVE 1zpsA 30 :DHETGEVLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=106391 # 1x31D.541.71 read from T0547.t06.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G544 (1x31D)S75 because G (3-10) conformation "forbidden" or filtered. T0547 541 :NEK 1x31D 72 :DTV T0547 545 :YEVEG 1x31D 76 :YEFKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=106393 # 1zh1A.541.88 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E542 (1zh1A)G125 because S (epsilon) conformation "forbidden" or filtered. T0547 541 :N 1zh1A 124 :V T0547 543 :KGYEVEG 1zh1A 126 :DFHYVTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=106395 # 1gutA.541.28 read from T0547.t06.many.frag # found chain 1gutA in training set Warning: unaligning (T0547)N541 (1gutA)I29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1gutA)G31 because T (delta_L) conformation "forbidden" or filtered. T0547 542 :E 1gutA 30 :A T0547 544 :GYEVEG 1gutA 32 :GNKITS Number of specific fragments extracted= 2 number of extra gaps= 2 total=106397 # 1dy5A.541.110 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)N541 (1dy5A)E111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1dy5A)G112 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 543 :K 1dy5A 113 :N T0547 545 :YEVEG 1dy5A 115 :YVPVH Number of specific fragments extracted= 2 number of extra gaps= 2 total=106399 # 1fiqB.541.223 read from T0547.t06.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)N541 (1fiqB)Q443 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1fiqB)S446 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1fiqB)M447 because G (3-10) conformation "forbidden" or filtered. T0547 542 :E 1fiqB 444 :P T0547 546 :EVEG 1fiqB 448 :QVKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=106401 # 1q9jA.541.383 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)E542 (1q9jA)A385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1q9jA)G386 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1q9jA)Q387 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1q9jA)H392 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :N 1q9jA 384 :Y T0547 545 :YEVE 1q9jA 388 :LIIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=106403 # 1mk0A.541.10 read from T0547.t06.many.frag # found chain 1mk0A in training set T0547 541 :NEKGYEVEG 1mk0A 11 :TLNNKVYVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=106404 # 1g1kA.541.42 read from T0547.t06.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)G549 (1g1kA)S52 because Y (epsilon') conformation "forbidden" or filtered. T0547 541 :NEKGYEVE 1g1kA 44 :DASLLEVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=106405 # 1u9iA.541.472 read from T0547.t06.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)G549 (1u9iA)D481 because P (beta_P) conformation "forbidden" or filtered. T0547 541 :NEKGYEVE 1u9iA 473 :SDKGPDIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=106406 # 1xyiA.541.34 read from T0547.t06.many.frag # found chain 1xyiA in training set Warning: unaligning (T0547)E542 (1xyiA)D36 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xyiA)N37 because L (left) conformation "forbidden" or filtered. T0547 541 :N 1xyiA 35 :D T0547 544 :GYEVEG 1xyiA 38 :GKTGRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=106408 # 1xipA.541.253 read from T0547.t06.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)E542 (1xipA)D254 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 because of BadResidue code BAD_PEPTIDE in next template residue (1xipA)T262 T0547 541 :N 1xipA 253 :I T0547 543 :KGYEVE 1xipA 255 :GSASFQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=106410 # 2f86B.541.118 read from T0547.t06.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)E542 (2f86B)Q459 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (2f86B)G460 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2f86B)R461 because P (beta_P) conformation "forbidden" or filtered. T0547 541 :N 2f86B 458 :K T0547 545 :YEVEG 2f86B 462 :WVCVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=106412 # 1of5A.541.186 read from T0547.t06.many.frag # found chain 1of5A in template set Warning: unaligning (T0547)N541 (1of5A)M454 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E542 (1of5A)N455 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1of5A)V458 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :KG 1of5A 456 :NS T0547 546 :EVEG 1of5A 459 :IIAS Number of specific fragments extracted= 2 number of extra gaps= 2 total=106414 # 1mqkH.541.98 read from T0547.t06.many.frag # found chain 1mqkH in template set Warning: unaligning (T0547)K543 (1mqkH)Y101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1mqkH)Y102 because S (epsilon) conformation "forbidden" or filtered. T0547 541 :NE 1mqkH 99 :HE T0547 545 :YEVEG 1mqkH 103 :YAMDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=106416 # 1zeqX.541.70 read from T0547.t06.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)E542 (1zeqX)G76 because L (left) conformation "forbidden" or filtered. T0547 541 :N 1zeqX 75 :Q T0547 543 :KGYEVEG 1zeqX 77 :NLSLLQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=106418 # 1s12A.541.6 read from T0547.t06.many.frag # found chain 1s12A in template set Warning: unaligning (T0547)G544 (1s12A)F10 because Y (epsilon') conformation "forbidden" or filtered. T0547 541 :NEK 1s12A 7 :TNS T0547 545 :YEVEG 1s12A 11 :FEVTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=106420 # 1p90A.541.35 read from T0547.t06.many.frag # found chain 1p90A in training set T0547 541 :NEKGYEVEG 1p90A 134 :SAKDASLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=106421 # 1ckmA.541.284 read from T0547.t06.many.frag # found chain 1ckmA in template set Warning: unaligning (T0547)E542 (1ckmA)D286 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1ckmA)G287 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1ckmA)Q293 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :N 1ckmA 285 :A T0547 544 :GYEVE 1ckmA 288 :TWKYI Number of specific fragments extracted= 2 number of extra gaps= 2 total=106423 # 1zxuA.541.161 read from T0547.t06.many.frag # found chain 1zxuA in training set Warning: unaligning (T0547)E546 (1zxuA)I167 because P (beta_P) conformation "forbidden" or filtered. T0547 541 :NEKGY 1zxuA 162 :GESDA T0547 547 :VEG 1zxuA 168 :VAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=106425 # 1k3rA.541.146 read from T0547.t06.many.frag # found chain 1k3rA in template set Warning: unaligning (T0547)E542 (1k3rA)G148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1k3rA)P155 because P (beta_P) conformation "forbidden" or filtered. T0547 541 :N 1k3rA 147 :L T0547 543 :KGYEVE 1k3rA 149 :KEILIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=106427 # 1f39A.541.49 read from T0547.t06.many.frag # found chain 1f39A in template set Warning: unaligning (T0547)K543 (1f39A)D187 because L (left) conformation "forbidden" or filtered. T0547 541 :NE 1f39A 185 :GG T0547 544 :GYEVEG 1f39A 188 :EFTFKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=106429 # 1hf2A.541.191 read from T0547.t06.many.frag # found chain 1hf2A in template set Warning: unaligning (T0547)E542 (1hf2A)G193 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1hf2A)P200 because P (beta_P) conformation "forbidden" or filtered. T0547 541 :N 1hf2A 192 :K T0547 543 :KGYEVE 1hf2A 194 :NRIVIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=106431 # 1xksA.541.235 read from T0547.t06.many.frag # found chain 1xksA in template set Warning: unaligning (T0547)G549 (1xksA)Y308 because Y (epsilon') conformation "forbidden" or filtered. T0547 541 :NEKGYEVE 1xksA 300 :DDSSEKHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=106432 # 1xkpC.541.38 read from T0547.t06.many.frag # found chain 1xkpC in training set Warning: unaligning (T0547)E548 (1xkpC)R46 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NEKGYEV 1xkpC 39 :HGSELVL T0547 549 :G 1xkpC 47 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=106434 # 1ooyA.541.440 read from T0547.t06.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)G549 (1ooyA)E449 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NEKGYEVE 1ooyA 441 :RKKGLTLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=106435 # 1i58A.541.87 read from T0547.t06.many.frag # found chain 1i58A in training set Warning: unaligning (T0547)G544 (1i58A)N442 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1i58A)V447 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NEK 1i58A 439 :EGN T0547 545 :YEVE 1i58A 443 :VVIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=106437 # 1c1yB.541.8 read from T0547.t06.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)E542 (1c1yB)N64 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1c1yB)N71 because P (beta_P) conformation "forbidden" or filtered. T0547 541 :N 1c1yB 63 :P T0547 543 :KGYEVE 1c1yB 65 :KQRTVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=106439 # 2f8aA.541.179 read from T0547.t06.many.frag # found chain 2f8aA in training set T0547 541 :NEKGYEVEG 2f8aA 168 :GPDGVPLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=106440 # 1wvqA.541.127 read from T0547.t06.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)N541 (1wvqA)E128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1wvqA)E130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1wvqA)R131 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1wvqA)G136 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :E 1wvqA 129 :P T0547 545 :YEVE 1wvqA 132 :RGVV Number of specific fragments extracted= 2 number of extra gaps= 3 total=106442 # 1l8bA.541.129 read from T0547.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0547)G549 (1l8bA)I165 because E (beta_S) conformation "forbidden" or filtered. T0547 541 :NEKGYEVE 1l8bA 157 :RAKGDKIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=106443 # 1x31D.542.72 read from T0547.t06.many.frag # found chain 1x31D in template set T0547 542 :EKGYEVEGI 1x31D 73 :TVSYEFKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106444 # 1gutA.542.29 read from T0547.t06.many.frag # found chain 1gutA in training set Warning: unaligning (T0547)E546 (1gutA)K34 because E (beta_S) conformation "forbidden" or filtered. T0547 542 :EKGY 1gutA 30 :AGGN T0547 547 :VEGI 1gutA 35 :ITSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=106446 # 1zh1A.542.89 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)E542 (1zh1A)G125 because S (epsilon) conformation "forbidden" or filtered. T0547 543 :KGYEVEGI 1zh1A 126 :DFHYVTGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=106447 # 1g1kA.542.43 read from T0547.t06.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)G549 (1g1kA)S52 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :EKGYEVE 1g1kA 45 :ASLLEVV T0547 550 :I 1g1kA 53 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=106449 # 1ooyA.542.441 read from T0547.t06.many.frag # found chain 1ooyA in training set T0547 542 :EKGYEVEGI 1ooyA 442 :KKGLTLIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106450 # 1wvqA.542.128 read from T0547.t06.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)K543 (1wvqA)E130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1wvqA)R131 because D (zeta) conformation "forbidden" or filtered. T0547 542 :E 1wvqA 129 :P T0547 545 :YEVEGI 1wvqA 132 :RGVVGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106452 # 1fiqB.542.224 read from T0547.t06.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)K543 (1fiqB)G445 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1fiqB)S446 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :E 1fiqB 444 :P T0547 545 :YEVEGI 1fiqB 447 :MQVKEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=106454 # 1q9jA.542.384 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)E542 (1q9jA)A385 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1q9jA)Q387 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :K 1q9jA 386 :G T0547 545 :YEVEGI 1q9jA 388 :LIIEHH Number of specific fragments extracted= 2 number of extra gaps= 2 total=106456 # 1zeqX.542.71 read from T0547.t06.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)E542 (1zeqX)G76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1zeqX)L78 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :K 1zeqX 77 :N T0547 545 :YEVEGI 1zeqX 79 :SLLQDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=106458 # 1zxuA.542.162 read from T0547.t06.many.frag # found chain 1zxuA in training set Warning: unaligning (T0547)V547 (1zxuA)V168 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1zxuA)A169 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :EKGYE 1zxuA 163 :ESDAI T0547 549 :GI 1zxuA 170 :QM Number of specific fragments extracted= 2 number of extra gaps= 1 total=106460 # 1dy5A.542.111 read from T0547.t06.many.frag # found chain 1dy5A in training set Warning: unaligning (T0547)E542 (1dy5A)G112 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1dy5A)P114 because C (cis) conformation "forbidden" or filtered. T0547 543 :K 1dy5A 113 :N T0547 545 :YEVEGI 1dy5A 115 :YVPVHF Number of specific fragments extracted= 2 number of extra gaps= 2 total=106462 # 1mqkH.542.99 read from T0547.t06.many.frag # found chain 1mqkH in template set Warning: unaligning (T0547)K543 (1mqkH)Y101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1mqkH)Y107 because E (beta_S) conformation "forbidden" or filtered. T0547 542 :E 1mqkH 100 :E T0547 544 :GYEVE 1mqkH 102 :YYAMD T0547 550 :I 1mqkH 108 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=106465 # 1k3rA.542.147 read from T0547.t06.many.frag # found chain 1k3rA in template set Warning: unaligning (T0547)E542 (1k3rA)G148 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :KGYEVEGI 1k3rA 149 :KEILIEPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=106466 # 1u9iA.542.473 read from T0547.t06.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)E548 (1u9iA)K480 because P (beta_P) conformation "forbidden" or filtered. T0547 542 :EKGYEV 1u9iA 474 :DKGPDI T0547 549 :GI 1u9iA 481 :DS Number of specific fragments extracted= 2 number of extra gaps= 1 total=106468 # 1p90A.542.36 read from T0547.t06.many.frag # found chain 1p90A in training set Warning: unaligning (T0547)G549 (1p90A)D142 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :EKGYEVE 1p90A 135 :AKDASLV T0547 550 :I 1p90A 143 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=106470 # 1s12A.542.7 read from T0547.t06.many.frag # found chain 1s12A in template set Warning: unaligning (T0547)G549 (1s12A)G15 because S (epsilon) conformation "forbidden" or filtered. T0547 542 :EKGYEVE 1s12A 8 :NSFFEVT T0547 550 :I 1s12A 16 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=106472 # 1f39A.542.50 read from T0547.t06.many.frag # found chain 1f39A in template set Warning: unaligning (T0547)K543 (1f39A)D187 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1f39A)K192 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1f39A)K193 because P (beta_P) conformation "forbidden" or filtered. T0547 542 :E 1f39A 186 :G T0547 544 :GYEV 1f39A 188 :EFTF T0547 550 :I 1f39A 194 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=106475 # 1mk0A.542.11 read from T0547.t06.many.frag # found chain 1mk0A in training set Warning: unaligning (T0547)K543 (1mk0A)N13 because G (3-10) conformation "forbidden" or filtered. T0547 542 :E 1mk0A 12 :L T0547 544 :GYEVEGI 1mk0A 14 :NKVYVGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=106477 # 2f8aA.542.180 read from T0547.t06.many.frag # found chain 2f8aA in training set T0547 542 :EKGYEVEGI 2f8aA 169 :PDGVPLRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=106478 # 1xyiA.542.35 read from T0547.t06.many.frag # found chain 1xyiA in training set T0547 542 :EKGYEVEGI 1xyiA 36 :DNGKTGRGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106479 # 1ntvA.542.110 read from T0547.t06.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)G549 (1ntvA)A140 because E (beta_S) conformation "forbidden" or filtered. T0547 542 :EKGYEVE 1ntvA 133 :EGNHRFV T0547 550 :I 1ntvA 141 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=106481 # 2f86B.542.119 read from T0547.t06.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)E542 (2f86B)Q459 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2f86B)R461 because P (beta_P) conformation "forbidden" or filtered. T0547 543 :K 2f86B 460 :G T0547 545 :YEVEGI 2f86B 462 :WVCVHV Number of specific fragments extracted= 2 number of extra gaps= 2 total=106483 # 2blnA.542.270 read from T0547.t06.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)K543 (2blnA)G272 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (2blnA)A273 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I550 (2blnA)G279 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :E 2blnA 271 :D T0547 545 :YEVEG 2blnA 274 :LEIVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=106485 # 1wspA.542.53 read from T0547.t06.many.frag # found chain 1wspA in template set T0547 542 :EKGYEVEGI 1wspA 802 :DCGVVFEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106486 # 1c1yB.542.9 read from T0547.t06.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)E542 (1c1yB)N64 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1c1yB)Q66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1c1yB)N71 because P (beta_P) conformation "forbidden" or filtered. T0547 543 :K 1c1yB 65 :K T0547 545 :YEVE 1c1yB 67 :RTVV T0547 550 :I 1c1yB 72 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=106489 # 1l1dA.542.102 read from T0547.t06.many.frag # found chain 1l1dA in template set Warning: unaligning (T0547)E548 (1l1dA)G479 because Y (epsilon') conformation "forbidden" or filtered. T0547 542 :EKGYEV 1l1dA 473 :AADSHL T0547 549 :GI 1l1dA 480 :HV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106491 # 1xipA.542.254 read from T0547.t06.many.frag # found chain 1xipA in template set Warning: unaligning (T0547)E542 (1xipA)D254 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K543 (1xipA)G255 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 because of BadResidue code BAD_PEPTIDE in next template residue (1xipA)T262 Warning: unaligning (T0547)I550 because of BadResidue code BAD_PEPTIDE at template residue (1xipA)T262 T0547 544 :GYEVE 1xipA 256 :SASFQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=106492 # 1i58A.542.88 read from T0547.t06.many.frag # found chain 1i58A in training set Warning: unaligning (T0547)E542 (1i58A)G440 because S (epsilon) conformation "forbidden" or filtered. T0547 543 :KGYEVEGI 1i58A 441 :NNVVIEVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=106493 # 2b5nA.542.136 read from T0547.t06.many.frag # found chain 2b5nA in template set T0547 542 :EKGYEVEGI 2b5nA 523 :PQELRQISH Number of specific fragments extracted= 1 number of extra gaps= 0 total=106494 # 1s3sG.542.60 read from T0547.t06.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)K543 (1s3sG)G305 because T (delta_L) conformation "forbidden" or filtered. T0547 542 :E 1s3sG 304 :D T0547 544 :GYEVEGI 1s3sG 306 :GRLVQKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=106496 # 1x31D.543.73 read from T0547.t06.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G544 (1x31D)S75 because G (3-10) conformation "forbidden" or filtered. T0547 543 :K 1x31D 74 :V T0547 545 :YEVEGII 1x31D 76 :YEFKAVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=106498 # 1g1kA.543.44 read from T0547.t06.many.frag # found chain 1g1kA in template set T0547 543 :KGYEVEGII 1g1kA 46 :SLLEVVSVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=106499 # 1zh1A.543.90 read from T0547.t06.many.frag # found chain 1zh1A in template set T0547 543 :KGYEVEGII 1zh1A 126 :DFHYVTGMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=106500 # 1ooyA.543.442 read from T0547.t06.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)E546 (1ooyA)T446 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :KGY 1ooyA 443 :KGL T0547 547 :VEGII 1ooyA 447 :LIELW Number of specific fragments extracted= 2 number of extra gaps= 1 total=106502 # 1wvqA.543.129 read from T0547.t06.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)K543 (1wvqA)E130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1wvqA)G133 because E (beta_S) conformation "forbidden" or filtered. T0547 544 :GY 1wvqA 131 :RR T0547 547 :VEGII 1wvqA 134 :VVGVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=106504 # 1zeqX.543.72 read from T0547.t06.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)K543 (1zeqX)N77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1zeqX)D83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I551 (1zeqX)K85 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GYEVE 1zeqX 78 :LSLLQ T0547 550 :I 1zeqX 84 :I Number of specific fragments extracted= 2 number of extra gaps= 3 total=106506 # 1gutA.543.30 read from T0547.t06.many.frag # found chain 1gutA in training set Warning: unaligning (T0547)E548 (1gutA)T36 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :KGYEV 1gutA 31 :GGNKI T0547 549 :GII 1gutA 37 :SII Number of specific fragments extracted= 2 number of extra gaps= 1 total=106508 # 1fiqB.543.225 read from T0547.t06.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)G544 (1fiqB)S446 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1fiqB)E451 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :K 1fiqB 445 :G T0547 545 :YEVE 1fiqB 447 :MQVK T0547 550 :II 1fiqB 452 :LA Number of specific fragments extracted= 3 number of extra gaps= 2 total=106511 # 1q9jA.543.385 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)K543 (1q9jA)G386 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1q9jA)Q387 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVEGII 1q9jA 388 :LIIEHHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=106512 # 7ahlA.543.93 read from T0547.t06.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)K543 (7ahlA)E94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (7ahlA)V95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)I550 (7ahlA)Y101 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVEG 7ahlA 96 :AQISD T0547 551 :I 7ahlA 102 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=106514 # 1p90A.543.37 read from T0547.t06.many.frag # found chain 1p90A in training set T0547 543 :KGYEVEGII 1p90A 136 :KDASLVDIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=106515 # 1u9iA.543.474 read from T0547.t06.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)E546 (1u9iA)D478 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1u9iA)D481 because P (beta_P) conformation "forbidden" or filtered. T0547 543 :KGY 1u9iA 475 :KGP T0547 547 :VE 1u9iA 479 :IK T0547 550 :II 1u9iA 482 :SF Number of specific fragments extracted= 3 number of extra gaps= 2 total=106518 # 1s3sG.543.61 read from T0547.t06.many.frag # found chain 1s3sG in template set T0547 543 :KGYEVEGII 1s3sG 305 :GGRLVQKFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=106519 # 1o65A.543.169 read from T0547.t06.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)I551 (1o65A)V176 because G (3-10) conformation "forbidden" or filtered. T0547 543 :KGYEVEGI 1o65A 168 :APLELVSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=106520 # 2blnA.543.271 read from T0547.t06.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)E546 (2blnA)E275 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (2blnA)T278 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :KGY 2blnA 272 :GAL T0547 547 :VE 2blnA 276 :IV T0547 550 :II 2blnA 279 :GQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=106523 # 2nlrA.543.36 read from T0547.t06.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)K543 (2nlrA)T37 because G (3-10) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 2nlrA 38 :GFRVTQAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=106524 # 1wspA.543.54 read from T0547.t06.many.frag # found chain 1wspA in template set T0547 543 :KGYEVEGII 1wspA 803 :CGVVFEEVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=106525 # 1vr9A.543.110 read from T0547.t06.many.frag # found chain 1vr9A in training set Warning: unaligning (T0547)G544 (1vr9A)E100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y545 (1vr9A)M101 because L (left) conformation "forbidden" or filtered. T0547 543 :K 1vr9A 99 :E T0547 546 :EVEGII 1vr9A 102 :RLKGAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106527 # 2f86B.543.120 read from T0547.t06.many.frag # found chain 2f86B in template set Warning: unaligning (T0547)G544 (2f86B)R461 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (2f86B)V463 because E (beta_S) conformation "forbidden" or filtered. T0547 543 :K 2f86B 460 :G T0547 545 :Y 2f86B 462 :W T0547 547 :VEGII 2f86B 464 :CVHVH Number of specific fragments extracted= 3 number of extra gaps= 2 total=106530 # 1ntvA.543.111 read from T0547.t06.many.frag # found chain 1ntvA in training set T0547 543 :KGYEVEGII 1ntvA 134 :GNHRFVAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=106531 # 2b5nA.543.137 read from T0547.t06.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)G549 (2b5nA)S530 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :KGYEVE 2b5nA 524 :QELRQI T0547 550 :II 2b5nA 531 :HT Number of specific fragments extracted= 2 number of extra gaps= 1 total=106533 # 1b12A.543.125 read from T0547.t06.many.frag # found chain 1b12A in template set Warning: unaligning (T0547)K543 (1b12A)G201 because T (delta_L) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 1b12A 202 :GEATSGFF Number of specific fragments extracted= 1 number of extra gaps= 1 total=106534 # 1s12A.543.8 read from T0547.t06.many.frag # found chain 1s12A in template set T0547 543 :KGYEVEGII 1s12A 9 :SFFEVTGHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106535 # 1mqkH.543.100 read from T0547.t06.many.frag # found chain 1mqkH in template set Warning: unaligning (T0547)K543 (1mqkH)Y101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G544 (1mqkH)Y102 because S (epsilon) conformation "forbidden" or filtered. T0547 545 :YEVEGII 1mqkH 103 :YAMDYWG Number of specific fragments extracted= 1 number of extra gaps= 1 total=106536 # 1i58A.543.89 read from T0547.t06.many.frag # found chain 1i58A in training set T0547 543 :KGYEVEGII 1i58A 441 :NNVVIEVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=106537 # 2aeuA.543.296 read from T0547.t06.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)E546 (2aeuA)V300 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I550 (2aeuA)V304 because G (3-10) conformation "forbidden" or filtered. T0547 543 :KGY 2aeuA 297 :TGF T0547 547 :VEG 2aeuA 301 :IKR T0547 551 :I 2aeuA 305 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=106540 # 1zxuA.543.163 read from T0547.t06.many.frag # found chain 1zxuA in training set Warning: unaligning (T0547)E548 (1zxuA)A169 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :KGYEV 1zxuA 164 :SDAIV T0547 549 :GII 1zxuA 170 :QMH Number of specific fragments extracted= 2 number of extra gaps= 1 total=106542 # 1c1yB.543.10 read from T0547.t06.many.frag # found chain 1c1yB in template set T0547 543 :KGYEVEGII 1c1yB 65 :KQRTVVNVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=106543 # 1m4jA.543.34 read from T0547.t06.many.frag # found chain 1m4jA in training set Warning: unaligning (T0547)K543 (1m4jA)E35 because L (left) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 1m4jA 36 :QLVVGSCS Number of specific fragments extracted= 1 number of extra gaps= 1 total=106544 # 2bo9B.543.204 read from T0547.t06.many.frag # found chain 2bo9B in training set Warning: unaligning (T0547)G549 (2bo9B)H211 because Y (epsilon') conformation "forbidden" or filtered. T0547 543 :KGYEVE 2bo9B 205 :YGTKVK T0547 550 :II 2bo9B 212 :NS Number of specific fragments extracted= 2 number of extra gaps= 1 total=106546 # 1x31D.544.74 read from T0547.t06.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G544 (1x31D)S75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1x31D)R83 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :YEVEGII 1x31D 76 :YEFKAVY Number of specific fragments extracted= 1 number of extra gaps= 2 total=106547 # 1g1kA.544.45 read from T0547.t06.many.frag # found chain 1g1kA in template set T0547 544 :GYEVEGIIE 1g1kA 47 :LLEVVSVDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106548 # 1wvqA.544.130 read from T0547.t06.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)G544 (1wvqA)R131 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)E546 (1wvqA)G133 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :Y 1wvqA 132 :R T0547 547 :VEGIIE 1wvqA 134 :VVGVVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=106550 # 1ooyA.544.443 read from T0547.t06.many.frag # found chain 1ooyA in training set T0547 544 :GYEVEGIIE 1ooyA 444 :GLTLIELWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=106551 # 1zh1A.544.91 read from T0547.t06.many.frag # found chain 1zh1A in template set T0547 544 :GYEVEGIIE 1zh1A 127 :FHYVTGMTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=106552 # 1zeqX.544.73 read from T0547.t06.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)G549 (1zeqX)D83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I551 (1zeqX)K85 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GYEVE 1zeqX 78 :LSLLQ T0547 550 :I 1zeqX 84 :I T0547 552 :E 1zeqX 86 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=106555 # 1o65A.544.170 read from T0547.t06.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)E546 (1o65A)E171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1o65A)S177 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GY 1o65A 169 :PL T0547 547 :VEGII 1o65A 172 :LVSRV Number of specific fragments extracted= 2 number of extra gaps= 2 total=106557 # 7ahlA.544.94 read from T0547.t06.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)E552 (7ahlA)P103 because C (cis) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 7ahlA 95 :VAQISDYY Number of specific fragments extracted= 1 number of extra gaps= 1 total=106558 # 1gutA.544.31 read from T0547.t06.many.frag # found chain 1gutA in training set T0547 544 :GYEVEGIIE 1gutA 32 :GNKITSIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=106559 # 1s3sG.544.62 read from T0547.t06.many.frag # found chain 1s3sG in template set T0547 544 :GYEVEGIIE 1s3sG 306 :GRLVQKFNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=106560 # 2nlrA.544.37 read from T0547.t06.many.frag # found chain 2nlrA in training set Warning: unaligning (T0547)E552 (2nlrA)G46 because S (epsilon) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 2nlrA 38 :GFRVTQAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=106561 # 2blnA.544.272 read from T0547.t06.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)G544 (2blnA)A273 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVEGIIE 2blnA 274 :LEIVTGQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=106562 # 1q9jA.544.386 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)G544 (1q9jA)Q387 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E548 (1q9jA)E391 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1q9jA)H392 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I551 (1q9jA)G394 because S (epsilon) conformation "forbidden" or filtered. T0547 545 :YEV 1q9jA 388 :LII T0547 550 :I 1q9jA 393 :H T0547 552 :E 1q9jA 395 :H Number of specific fragments extracted= 3 number of extra gaps= 3 total=106565 # 1p90A.544.38 read from T0547.t06.many.frag # found chain 1p90A in training set Warning: unaligning (T0547)G544 (1p90A)D137 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1p90A)D142 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVE 1p90A 138 :ASLV T0547 550 :IIE 1p90A 143 :IRS Number of specific fragments extracted= 2 number of extra gaps= 2 total=106567 # 1fiqB.544.226 read from T0547.t06.many.frag # found chain 1fiqB in template set Warning: unaligning (T0547)G544 (1fiqB)S446 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1fiqB)E451 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVE 1fiqB 447 :MQVK T0547 550 :IIE 1fiqB 452 :LAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=106569 # 1m4jA.544.35 read from T0547.t06.many.frag # found chain 1m4jA in training set T0547 544 :GYEVEGIIE 1m4jA 36 :QLVVGSCSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=106570 # 1kyfA.544.222 read from T0547.t06.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)I551 (1kyfA)T921 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GYEVEGI 1kyfA 914 :MYRLTLR T0547 552 :E 1kyfA 922 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=106572 # 1u9iA.544.475 read from T0547.t06.many.frag # found chain 1u9iA in template set Warning: unaligning (T0547)E548 (1u9iA)K480 because P (beta_P) conformation "forbidden" or filtered. T0547 544 :GYEV 1u9iA 476 :GPDI T0547 549 :GIIE 1u9iA 481 :DSFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=106574 # 2aeuA.544.297 read from T0547.t06.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)G549 (2aeuA)R303 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GYEVE 2aeuA 298 :GFVIK T0547 550 :IIE 2aeuA 304 :VYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=106576 # 1c1yB.544.11 read from T0547.t06.many.frag # found chain 1c1yB in template set T0547 544 :GYEVEGIIE 1c1yB 66 :QRTVVNVRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=106577 # 1xmtA.544.35 read from T0547.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G544 (1xmtA)V36 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1xmtA)V44 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVEGII 1xmtA 37 :MDLVHTY Number of specific fragments extracted= 1 number of extra gaps= 2 total=106578 # 1zupA.544.127 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 544 :GYEVEGIIE 1zupA 116 :GILFKVVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=106579 # 1wspA.544.55 read from T0547.t06.many.frag # found chain 1wspA in template set Warning: unaligning (T0547)I551 (1wspA)R811 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1wspA)E812 because P (beta_P) conformation "forbidden" or filtered. T0547 544 :GYEVEGI 1wspA 804 :GVVFEEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=106580 # 2bo9B.544.205 read from T0547.t06.many.frag # found chain 2bo9B in training set Warning: unaligning (T0547)G549 (2bo9B)H211 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I550 (2bo9B)N212 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GYEVE 2bo9B 206 :GTKVK T0547 551 :IE 2bo9B 213 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=106582 # 1szwA.544.338 read from T0547.t06.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)G544 (1szwA)T317 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVEGIIE 1szwA 318 :VEIRFWLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=106583 # 1i58A.544.90 read from T0547.t06.many.frag # found chain 1i58A in training set Warning: unaligning (T0547)G544 (1i58A)N442 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVEGIIE 1i58A 443 :VVIEVEDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=106584 # 1x6oA.544.161 read from T0547.t06.many.frag # found chain 1x6oA in training set Warning: unaligning (T0547)G544 (1x6oA)T154 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1x6oA)Q159 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVE 1x6oA 155 :EQVL T0547 550 :IIE 1x6oA 160 :TKN Number of specific fragments extracted= 2 number of extra gaps= 2 total=106586 # 2b5nA.544.138 read from T0547.t06.many.frag # found chain 2b5nA in template set Warning: unaligning (T0547)E546 (2b5nA)R527 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (2b5nA)S530 because Y (epsilon') conformation "forbidden" or filtered. T0547 544 :GY 2b5nA 525 :EL T0547 547 :VE 2b5nA 528 :QI T0547 550 :IIE 2b5nA 531 :HTE Number of specific fragments extracted= 3 number of extra gaps= 2 total=106589 # 1s12A.544.9 read from T0547.t06.many.frag # found chain 1s12A in template set Warning: unaligning (T0547)G549 (1s12A)G15 because S (epsilon) conformation "forbidden" or filtered. T0547 544 :GYEVE 1s12A 10 :FFEVT T0547 550 :IIE 1s12A 16 :HAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=106591 # 1u07A.544.40 read from T0547.t06.many.frag # found chain 1u07A in training set Warning: unaligning (T0547)E552 (1u07A)P198 because C (cis) conformation "forbidden" or filtered. T0547 544 :GYEVEGII 1u07A 190 :NVQILSAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=106592 # 1x31D.545.75 read from T0547.t06.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)Y545 (1x31D)Y76 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1x31D)A80 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVE 1x31D 77 :EFK T0547 550 :IIEA 1x31D 81 :VYRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=106594 # 1ooyA.545.444 read from T0547.t06.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. T0547 545 :YEVEGIIE 1ooyA 445 :LTLIELWE Number of specific fragments extracted= 1 number of extra gaps= 1 total=106595 # 1g1kA.545.46 read from T0547.t06.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)G549 (1g1kA)S52 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVE 1g1kA 48 :LEVV T0547 550 :IIEA 1g1kA 53 :VDAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=106597 # 1wvqA.545.131 read from T0547.t06.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)E552 (1wvqA)D139 because N (gamma') conformation "forbidden" or filtered. T0547 545 :YEVEGII 1wvqA 132 :RGVVGVV T0547 553 :A 1wvqA 140 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=106599 # 1zh1A.545.92 read from T0547.t06.many.frag # found chain 1zh1A in template set T0547 545 :YEVEGIIEA 1zh1A 128 :HYVTGMTTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=106600 # 1o65A.545.171 read from T0547.t06.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)E546 (1o65A)E171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1o65A)D178 because G (3-10) conformation "forbidden" or filtered. T0547 545 :Y 1o65A 170 :L T0547 547 :VEGIIE 1o65A 172 :LVSRVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=106602 # 7ahlA.545.95 read from T0547.t06.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)E552 (7ahlA)P103 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (7ahlA)R104 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEVEGII 7ahlA 96 :AQISDYY Number of specific fragments extracted= 1 number of extra gaps= 1 total=106603 # 1qnaA.545.169 read from T0547.t06.many.frag # found chain 1qnaA in training set T0547 545 :YEVEGIIEA 1qnaA 170 :IVITGAKMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=106604 # 1zeqX.545.74 read from T0547.t06.many.frag # found chain 1zeqX in training set T0547 545 :YEVEGIIEA 1zeqX 79 :SLLQDIKVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=106605 # 1c1yB.545.12 read from T0547.t06.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)Y545 (1c1yB)R67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1c1yB)N71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1c1yB)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 546 :EVE 1c1yB 68 :TVV T0547 550 :IIE 1c1yB 72 :VRN Number of specific fragments extracted= 2 number of extra gaps= 3 total=106607 # 2blnA.545.273 read from T0547.t06.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)A553 (2blnA)G282 because S (epsilon) conformation "forbidden" or filtered. T0547 545 :YEVEGIIE 2blnA 274 :LEIVTGQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=106608 # 1s3sG.545.63 read from T0547.t06.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)E546 (1s3sG)L308 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1s3sG)K311 because S (epsilon) conformation "forbidden" or filtered. T0547 545 :Y 1s3sG 307 :R T0547 547 :VE 1s3sG 309 :VQ T0547 550 :IIEA 1s3sG 312 :FNHS Number of specific fragments extracted= 3 number of extra gaps= 2 total=106611 # 1gutA.545.32 read from T0547.t06.many.frag # found chain 1gutA in training set T0547 545 :YEVEGIIEA 1gutA 33 :NKITSIISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106612 # 1q9jA.545.387 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)I551 (1q9jA)G394 because S (epsilon) conformation "forbidden" or filtered. T0547 545 :YEVEGI 1q9jA 388 :LIIEHH T0547 552 :EA 1q9jA 395 :HI Number of specific fragments extracted= 2 number of extra gaps= 1 total=106614 # 1wspA.545.56 read from T0547.t06.many.frag # found chain 1wspA in template set Warning: unaligning (T0547)G549 (1wspA)E809 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :YEVE 1wspA 805 :VVFE T0547 550 :IIEA 1wspA 810 :VRED Number of specific fragments extracted= 2 number of extra gaps= 1 total=106616 # 1u07A.545.41 read from T0547.t06.many.frag # found chain 1u07A in training set Warning: unaligning (T0547)E552 (1u07A)P198 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1u07A)A199 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :YEVEGII 1u07A 191 :VQILSAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=106617 # 1zupA.545.128 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)G549 (1zupA)V121 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :YEVE 1zupA 117 :ILFK T0547 550 :IIEA 1zupA 122 :VKEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=106619 # 1kyfA.545.223 read from T0547.t06.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)E546 (1kyfA)R916 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I551 (1kyfA)T921 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :Y 1kyfA 915 :Y T0547 547 :VEGI 1kyfA 917 :LTLR T0547 552 :EA 1kyfA 922 :SK Number of specific fragments extracted= 3 number of extra gaps= 2 total=106622 # 1xmtA.545.36 read from T0547.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)E546 (1xmtA)D38 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :Y 1xmtA 37 :M T0547 547 :VEGIIEA 1xmtA 39 :LVHTYVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=106624 # 2aeuA.545.298 read from T0547.t06.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)G549 (2aeuA)R303 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVE 2aeuA 299 :FVIK T0547 550 :IIEA 2aeuA 304 :VYKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=106626 # 1gp0A.545.116 read from T0547.t06.many.frag # found chain 1gp0A in training set Warning: unaligning (T0547)E546 (1gp0A)M1625 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1gp0A)S1628 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :Y 1gp0A 1624 :P T0547 547 :VE 1gp0A 1626 :LI T0547 550 :IIEA 1gp0A 1629 :LDKQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=106629 # 2nlrA.545.38 read from T0547.t06.many.frag # found chain 2nlrA in training set T0547 545 :YEVEGIIEA 2nlrA 39 :FRVTQADGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=106630 # 1p90A.545.39 read from T0547.t06.many.frag # found chain 1p90A in training set Warning: unaligning (T0547)G549 (1p90A)D142 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1p90A)T146 because G (3-10) conformation "forbidden" or filtered. T0547 545 :YEVE 1p90A 138 :ASLV T0547 550 :IIE 1p90A 143 :IRS Number of specific fragments extracted= 2 number of extra gaps= 2 total=106632 # 1szwA.545.339 read from T0547.t06.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)E548 (1szwA)R321 because E (beta_S) conformation "forbidden" or filtered. T0547 545 :YEV 1szwA 318 :VEI T0547 549 :GIIEA 1szwA 322 :FWLPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=106634 # 1mzgA.545.66 read from T0547.t06.many.frag # found chain 1mzgA in template set Warning: unaligning (T0547)I550 (1mzgA)D72 because Y (epsilon') conformation "forbidden" or filtered. T0547 545 :YEVEG 1mzgA 67 :IELQG T0547 551 :IEA 1mzgA 73 :SDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=106636 # 1quqB.545.78 read from T0547.t06.many.frag # found chain 1quqB in template set T0547 545 :YEVEGIIEA 1quqB 79 :ILCTSYVQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=106637 # 1u0sA.545.33 read from T0547.t06.many.frag # found chain 1u0sA in template set Warning: unaligning (T0547)E546 (1u0sA)E209 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1u0sA)P215 because C (cis) conformation "forbidden" or filtered. T0547 545 :Y 1u0sA 208 :C T0547 547 :VEGII 1u0sA 210 :VVRTI T0547 553 :A 1u0sA 216 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=106640 # 2bt6A.545.17 read from T0547.t06.many.frag # found chain 2bt6A in training set T0547 545 :YEVEGIIEA 2bt6A 18 :TLTTKGKIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=106641 # 2bo9B.545.206 read from T0547.t06.many.frag # found chain 2bo9B in training set Warning: unaligning (T0547)G549 (2bo9B)H211 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I550 (2bo9B)N212 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (2bo9B)R214 because P (beta_P) conformation "forbidden" or filtered. T0547 545 :YEVE 2bo9B 207 :TKVK T0547 551 :I 2bo9B 213 :S T0547 553 :A 2bo9B 215 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=106644 # 1e42A.545.232 read from T0547.t06.many.frag # found chain 1e42A in template set T0547 545 :YEVEGIIEA 1e42A 912 :YTLSLKCRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106645 # 1x31D.546.76 read from T0547.t06.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G549 (1x31D)A80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1x31D)A84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1x31D)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 546 :EVE 1x31D 77 :EFK T0547 550 :IIE 1x31D 81 :VYR Number of specific fragments extracted= 2 number of extra gaps= 2 total=106647 # 1ooyA.546.445 read from T0547.t06.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. T0547 546 :EVEGIIE 1ooyA 446 :TLIELWE T0547 554 :Q 1ooyA 454 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=106649 # 1wvqA.546.132 read from T0547.t06.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)G549 (1wvqA)G136 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1wvqA)G140 because S (epsilon) conformation "forbidden" or filtered. T0547 546 :EVE 1wvqA 133 :GVV T0547 550 :IIE 1wvqA 137 :VVD T0547 554 :Q 1wvqA 141 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=106652 # 7ahlA.546.96 read from T0547.t06.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)G549 (7ahlA)D100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (7ahlA)P103 because C (cis) conformation "forbidden" or filtered. T0547 546 :EVE 7ahlA 97 :QIS T0547 550 :II 7ahlA 101 :YY T0547 553 :AQ 7ahlA 104 :RN Number of specific fragments extracted= 3 number of extra gaps= 2 total=106655 # 1g1kA.546.47 read from T0547.t06.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)G549 (1g1kA)S52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1g1kA)A55 because P (beta_P) conformation "forbidden" or filtered. T0547 546 :EVE 1g1kA 49 :EVV T0547 550 :II 1g1kA 53 :VD T0547 553 :AQ 1g1kA 56 :GP Number of specific fragments extracted= 3 number of extra gaps= 2 total=106658 # 1o65A.546.172 read from T0547.t06.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)G549 (1o65A)S174 because E (beta_S) conformation "forbidden" or filtered. T0547 546 :EVE 1o65A 171 :ELV T0547 550 :IIEAQ 1o65A 175 :RVSDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106660 # 1qnaA.546.170 read from T0547.t06.many.frag # found chain 1qnaA in training set Warning: unaligning (T0547)I551 (1qnaA)K176 because G (3-10) conformation "forbidden" or filtered. T0547 546 :EVEGI 1qnaA 171 :VITGA T0547 552 :EAQ 1qnaA 177 :MRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=106662 # 1zupA.546.129 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)I551 (1zupA)K123 because G (3-10) conformation "forbidden" or filtered. T0547 546 :EVEGI 1zupA 118 :LFKVV T0547 552 :EAQ 1zupA 124 :EGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=106664 # 1gutA.546.33 read from T0547.t06.many.frag # found chain 1gutA in training set Warning: unaligning (T0547)G549 (1gutA)S37 because E (beta_S) conformation "forbidden" or filtered. T0547 546 :EVE 1gutA 34 :KIT T0547 550 :IIEAQ 1gutA 38 :IISLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=106666 # 1zh1A.546.93 read from T0547.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0547)A553 (1zh1A)D136 because P (beta_P) conformation "forbidden" or filtered. T0547 546 :EVEGIIE 1zh1A 129 :YVTGMTT T0547 554 :Q 1zh1A 137 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=106668 # 1q9jA.546.388 read from T0547.t06.many.frag # found chain 1q9jA in template set T0547 546 :EVEGIIEAQ 1q9jA 389 :IIEHHGHIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106669 # 1c1yB.546.13 read from T0547.t06.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)G549 (1c1yB)N71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1c1yB)G75 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1c1yB)M76 because P (beta_P) conformation "forbidden" or filtered. T0547 546 :EVE 1c1yB 68 :TVV T0547 550 :IIE 1c1yB 72 :VRN Number of specific fragments extracted= 2 number of extra gaps= 2 total=106671 # 1kyfA.546.224 read from T0547.t06.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)G549 (1kyfA)L919 because E (beta_S) conformation "forbidden" or filtered. T0547 546 :EVE 1kyfA 916 :RLT T0547 550 :IIEAQ 1kyfA 920 :RTSKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=106673 # 2aeuA.546.299 read from T0547.t06.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)G549 (2aeuA)R303 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVE 2aeuA 300 :VIK T0547 550 :IIEAQ 2aeuA 304 :VYKDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=106675 # 1u07A.546.42 read from T0547.t06.many.frag # found chain 1u07A in training set Warning: unaligning (T0547)E552 (1u07A)P198 because C (cis) conformation "forbidden" or filtered. T0547 546 :EVEGII 1u07A 192 :QILSAK T0547 553 :AQ 1u07A 199 :AN Number of specific fragments extracted= 2 number of extra gaps= 1 total=106677 # 1wspA.546.57 read from T0547.t06.many.frag # found chain 1wspA in template set Warning: unaligning (T0547)G549 (1wspA)E809 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I551 (1wspA)R811 because G (3-10) conformation "forbidden" or filtered. T0547 546 :EVE 1wspA 806 :VFE T0547 550 :I 1wspA 810 :V T0547 552 :EAQ 1wspA 812 :EDE Number of specific fragments extracted= 3 number of extra gaps= 2 total=106680 # 1zeqX.546.75 read from T0547.t06.many.frag # found chain 1zeqX in training set Warning: unaligning (T0547)G549 (1zeqX)D83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I551 (1zeqX)K85 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 because last residue in template chain is (1zeqX)Q88 T0547 546 :EVE 1zeqX 80 :LLQ T0547 550 :I 1zeqX 84 :I T0547 552 :EA 1zeqX 86 :VS Number of specific fragments extracted= 3 number of extra gaps= 2 total=106683 # 2blnA.546.274 read from T0547.t06.many.frag # found chain 2blnA in training set Warning: unaligning (T0547)A553 (2blnA)G282 because S (epsilon) conformation "forbidden" or filtered. T0547 546 :EVEGIIE 2blnA 275 :EIVTGQA T0547 554 :Q 2blnA 283 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=106685 # 2bt6A.546.18 read from T0547.t06.many.frag # found chain 2bt6A in training set Warning: unaligning (T0547)E548 (2bt6A)T21 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (2bt6A)K22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (2bt6A)G26 because T (delta_L) conformation "forbidden" or filtered. T0547 546 :EV 2bt6A 19 :LT T0547 550 :IIE 2bt6A 23 :GKI T0547 554 :Q 2bt6A 27 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=106688 # 1ntvA.546.114 read from T0547.t06.many.frag # found chain 1ntvA in training set T0547 546 :EVEGIIEAQ 1ntvA 137 :RFVAIKTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=106689 # 1s3sG.546.64 read from T0547.t06.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)Q554 (1s3sG)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVEGIIEA 1s3sG 308 :LVQKFNHS Number of specific fragments extracted= 1 number of extra gaps= 1 total=106690 # 2a6aA.546.144 read from T0547.t06.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)G549 (2a6aA)S136 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVE 2a6aA 133 :KEP T0547 550 :IIEAQ 2a6aA 137 :VVSDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=106692 # 1mzgA.546.67 read from T0547.t06.many.frag # found chain 1mzgA in template set T0547 546 :EVEGIIEAQ 1mzgA 68 :ELQGDSDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106693 # 1szwA.546.340 read from T0547.t06.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)G549 (1szwA)F322 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1szwA)A326 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1szwA)G327 because T (delta_L) conformation "forbidden" or filtered. T0547 546 :EVE 1szwA 319 :EIR T0547 550 :IIE 1szwA 323 :WLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=106695 # 1gp0A.546.117 read from T0547.t06.many.frag # found chain 1gp0A in training set T0547 546 :EVEGIIEAQ 1gp0A 1625 :MLISLDKQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=106696 # 1e42A.546.233 read from T0547.t06.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)E548 (1e42A)S915 because E (beta_S) conformation "forbidden" or filtered. T0547 546 :EV 1e42A 913 :TL T0547 549 :GIIEAQ 1e42A 916 :LKCRAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=106698 # 1y0hA.546.56 read from T0547.t06.many.frag # found chain 1y0hA in training set Warning: unaligning (T0547)A553 (1y0hA)S61 because Y (epsilon') conformation "forbidden" or filtered. T0547 546 :EVEGIIE 1y0hA 54 :VLFERYR T0547 554 :Q 1y0hA 62 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=106700 # 1p90A.546.40 read from T0547.t06.many.frag # found chain 1p90A in training set Warning: unaligning (T0547)E546 (1p90A)S139 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1p90A)D142 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1p90A)T146 because G (3-10) conformation "forbidden" or filtered. T0547 547 :VE 1p90A 140 :LV T0547 550 :IIE 1p90A 143 :IRS T0547 554 :Q 1p90A 147 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=106703 # 1xmtA.546.37 read from T0547.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0547)G549 (1xmtA)H41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1xmtA)V44 because E (beta_S) conformation "forbidden" or filtered. T0547 546 :EVE 1xmtA 38 :DLV T0547 550 :II 1xmtA 42 :TY T0547 553 :AQ 1xmtA 45 :PS Number of specific fragments extracted= 3 number of extra gaps= 2 total=106706 # 1ok0A.546.31 read from T0547.t06.many.frag # found chain 1ok0A in training set Warning: unaligning (T0547)G549 (1ok0A)V35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1ok0A)D40 because T (delta_L) conformation "forbidden" or filtered. T0547 546 :EVE 1ok0A 32 :TVK T0547 550 :IIEA 1ok0A 36 :VYED Number of specific fragments extracted= 2 number of extra gaps= 2 total=106708 # 1zupA.547.130 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 547 :VEGIIEAQS 1zupA 119 :FKVVKEGKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=106709 # 1x31D.547.77 read from T0547.t06.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)Q554 (1x31D)G85 because T (delta_L) conformation "forbidden" or filtered. T0547 547 :VEGIIEA 1x31D 78 :FKAVYRA T0547 555 :S 1x31D 86 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=106711 # 1ooyA.547.446 read from T0547.t06.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. T0547 547 :VEGIIE 1ooyA 447 :LIELWE T0547 554 :QS 1ooyA 454 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=106713 # 1wvqA.547.133 read from T0547.t06.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)E552 (1wvqA)D139 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1wvqA)H141 because E (beta_S) conformation "forbidden" or filtered. T0547 547 :VEGII 1wvqA 134 :VVGVV T0547 553 :A 1wvqA 140 :G T0547 555 :S 1wvqA 142 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=106716 # 1gutA.547.34 read from T0547.t06.many.frag # found chain 1gutA in training set Warning: unaligning (T0547)E552 (1gutA)S40 because P (beta_P) conformation "forbidden" or filtered. T0547 547 :VEGII 1gutA 35 :ITSII T0547 553 :AQS 1gutA 41 :LDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=106718 # 7ahlA.547.97 read from T0547.t06.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)G549 (7ahlA)D100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (7ahlA)P103 because C (cis) conformation "forbidden" or filtered. T0547 547 :VE 7ahlA 98 :IS T0547 550 :II 7ahlA 101 :YY T0547 553 :AQS 7ahlA 104 :RNS Number of specific fragments extracted= 3 number of extra gaps= 2 total=106721 # 1q9jA.547.389 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)G549 (1q9jA)H392 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I551 (1q9jA)G394 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1q9jA)E398 because L (left) conformation "forbidden" or filtered. T0547 547 :VE 1q9jA 390 :IE T0547 550 :I 1q9jA 393 :H T0547 552 :EAQ 1q9jA 395 :HIA Number of specific fragments extracted= 3 number of extra gaps= 3 total=106724 # 1kyfA.547.225 read from T0547.t06.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)I551 (1kyfA)T921 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :VEGI 1kyfA 917 :LTLR T0547 552 :EAQS 1kyfA 922 :SKDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=106726 # 2aeuA.547.300 read from T0547.t06.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)G549 (2aeuA)R303 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :VE 2aeuA 301 :IK T0547 550 :IIEAQS 2aeuA 304 :VYKDDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=106728 # 1c1yB.547.14 read from T0547.t06.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)E552 (1c1yB)N74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1c1yB)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 547 :VEGII 1c1yB 69 :VVNVR T0547 554 :QS 1c1yB 76 :MS Number of specific fragments extracted= 2 number of extra gaps= 1 total=106730 # 1g1kA.547.48 read from T0547.t06.many.frag # found chain 1g1kA in template set Warning: unaligning (T0547)G549 (1g1kA)S52 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :VE 1g1kA 50 :VV T0547 550 :IIEAQS 1g1kA 53 :VDAGPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=106732 # 1w5rA.547.238 read from T0547.t06.many.frag # found chain 1w5rA in training set T0547 547 :VEGIIEAQS 1w5rA 236 :HIRFDSAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=106733 # 2a6aA.547.145 read from T0547.t06.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)G549 (2a6aA)S136 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :VE 2a6aA 134 :EP T0547 550 :IIEAQS 2a6aA 137 :VVSDEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=106735 # 1qnaA.547.171 read from T0547.t06.many.frag # found chain 1qnaA in training set T0547 547 :VEGIIEAQS 1qnaA 172 :ITGAKMRDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=106736 # 1yc61.547.70 read from T0547.t06.many.frag # found chain 1yc61 in template set Warning: unaligning (T0547)E548 (1yc61)C107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1yc61)Q112 because E (beta_S) conformation "forbidden" or filtered. T0547 547 :V 1yc61 106 :A T0547 549 :GIIE 1yc61 108 :VAEK T0547 554 :QS 1yc61 113 :AQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=106739 # 1szwA.547.341 read from T0547.t06.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)E548 (1szwA)R321 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1szwA)F322 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1szwA)P325 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1szwA)G327 because T (delta_L) conformation "forbidden" or filtered. T0547 547 :V 1szwA 320 :I T0547 550 :II 1szwA 323 :WL T0547 553 :A 1szwA 326 :A T0547 555 :S 1szwA 328 :S Number of specific fragments extracted= 4 number of extra gaps= 3 total=106743 # 1ntvA.547.115 read from T0547.t06.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)E552 (1ntvA)T143 because P (beta_P) conformation "forbidden" or filtered. T0547 547 :VEGII 1ntvA 138 :FVAIK T0547 553 :AQS 1ntvA 144 :AQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=106745 # 1o65A.547.173 read from T0547.t06.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)G549 (1o65A)S174 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1o65A)S177 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1o65A)D178 because G (3-10) conformation "forbidden" or filtered. T0547 547 :VE 1o65A 172 :LV T0547 550 :II 1o65A 175 :RV T0547 554 :QS 1o65A 179 :VT Number of specific fragments extracted= 3 number of extra gaps= 2 total=106748 # 1vr9A.547.114 read from T0547.t06.many.frag # found chain 1vr9A in training set T0547 547 :VEGIIEAQS 1vr9A 103 :LKGAVSLHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=106749 # 1mzgA.547.68 read from T0547.t06.many.frag # found chain 1mzgA in template set T0547 547 :VEGIIEAQS 1mzgA 69 :LQGDSDAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=106750 # 1y0hA.547.57 read from T0547.t06.many.frag # found chain 1y0hA in training set Warning: unaligning (T0547)G549 (1y0hA)E57 because E (beta_S) conformation "forbidden" or filtered. T0547 547 :VE 1y0hA 55 :LF T0547 550 :IIEAQS 1y0hA 58 :RYRSRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=106752 # 2ab5A.547.214 read from T0547.t06.many.frag # found chain 2ab5A in template set Warning: unaligning (T0547)G549 (2ab5A)T465 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I551 (2ab5A)K467 because G (3-10) conformation "forbidden" or filtered. T0547 547 :VE 2ab5A 463 :KM T0547 550 :I 2ab5A 466 :T T0547 552 :EAQS 2ab5A 468 :SIND Number of specific fragments extracted= 3 number of extra gaps= 2 total=106755 # 2bt6A.547.19 read from T0547.t06.many.frag # found chain 2bt6A in training set Warning: unaligning (T0547)G549 (2bt6A)K22 because E (beta_S) conformation "forbidden" or filtered. T0547 547 :VE 2bt6A 20 :TT T0547 550 :IIEAQS 2bt6A 23 :GKIGDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=106757 # 1u07A.547.43 read from T0547.t06.many.frag # found chain 1u07A in training set Warning: unaligning (T0547)G549 (1u07A)S195 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1u07A)P198 because C (cis) conformation "forbidden" or filtered. T0547 547 :VE 1u07A 193 :IL T0547 550 :II 1u07A 196 :AK T0547 553 :AQS 1u07A 199 :ANM Number of specific fragments extracted= 3 number of extra gaps= 2 total=106760 # 2blnA.547.275 read from T0547.t06.many.frag # found chain 2blnA in training set T0547 547 :VEGIIEAQS 2blnA 276 :IVTGQAGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=106761 # 1s3sG.547.65 read from T0547.t06.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)A553 (1s3sG)S315 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1s3sG)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :VEGIIE 1s3sG 309 :VQKFNH T0547 555 :S 1s3sG 317 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=106763 # 1p90A.547.41 read from T0547.t06.many.frag # found chain 1p90A in training set Warning: unaligning (T0547)G549 (1p90A)D142 because Y (epsilon') conformation "forbidden" or filtered. T0547 547 :VE 1p90A 140 :LV T0547 550 :IIEAQS 1p90A 143 :IRSTLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=106765 # 1dq3A.547.295 read from T0547.t06.many.frag # found chain 1dq3A in template set Warning: unaligning (T0547)G549 (1dq3A)L298 because P (beta_P) conformation "forbidden" or filtered. T0547 547 :VE 1dq3A 296 :YV T0547 550 :IIEAQS 1dq3A 299 :HVEEYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=106767 # 2bo9B.547.208 read from T0547.t06.many.frag # found chain 2bo9B in training set Warning: unaligning (T0547)S555 because last residue in template chain is (2bo9B)K217 T0547 547 :VEGIIEAQ 2bo9B 209 :VKHNSRLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=106768 # 1e42A.547.234 read from T0547.t06.many.frag # found chain 1e42A in template set Warning: unaligning (T0547)E548 (1e42A)S915 because E (beta_S) conformation "forbidden" or filtered. T0547 547 :V 1e42A 914 :L T0547 549 :GIIEAQS 1e42A 916 :LKCRAPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=106770 # 1zupA.548.131 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)G549 (1zupA)V121 because P (beta_P) conformation "forbidden" or filtered. T0547 548 :E 1zupA 120 :K T0547 550 :IIEAQSI 1zupA 122 :VKEGKDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=106772 # 1gutA.548.35 read from T0547.t06.many.frag # found chain 1gutA in training set T0547 548 :EGIIEAQSI 1gutA 36 :TSIISLDSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106773 # 1ooyA.548.447 read from T0547.t06.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)E552 (1ooyA)E452 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. T0547 548 :EGII 1ooyA 448 :IELW T0547 554 :QSI 1ooyA 454 :LTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106775 # 2a6aA.548.146 read from T0547.t06.many.frag # found chain 2a6aA in template set T0547 548 :EGIIEAQSI 2a6aA 135 :PSVVSDEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106776 # 1kyfA.548.226 read from T0547.t06.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)G549 (1kyfA)L919 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)I551 (1kyfA)T921 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :E 1kyfA 918 :T T0547 550 :I 1kyfA 920 :R T0547 552 :EAQSI 1kyfA 922 :SKDTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=106779 # 1vr9A.548.115 read from T0547.t06.many.frag # found chain 1vr9A in training set T0547 548 :EGIIEAQSI 1vr9A 104 :KGAVSLHDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=106780 # 1x31D.548.78 read from T0547.t06.many.frag # found chain 1x31D in template set Warning: unaligning (T0547)G549 (1x31D)A80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1x31D)G85 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1x31D)E86 because P (beta_P) conformation "forbidden" or filtered. T0547 548 :E 1x31D 79 :K T0547 550 :IIEA 1x31D 81 :VYRA T0547 556 :I 1x31D 87 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=106783 # 1yc61.548.71 read from T0547.t06.many.frag # found chain 1yc61 in template set Warning: unaligning (T0547)E548 (1yc61)C107 because Y (epsilon') conformation "forbidden" or filtered. T0547 549 :GIIEAQSI 1yc61 108 :VAEKQAQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=106784 # 2bt6A.548.20 read from T0547.t06.many.frag # found chain 2bt6A in training set Warning: unaligning (T0547)E548 (2bt6A)T21 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (2bt6A)G26 because T (delta_L) conformation "forbidden" or filtered. T0547 549 :GIIE 2bt6A 22 :KGKI T0547 554 :QSI 2bt6A 27 :DSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=106786 # 1szwA.548.342 read from T0547.t06.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)E552 (1szwA)P325 because P (beta_P) conformation "forbidden" or filtered. T0547 548 :EGII 1szwA 321 :RFWL T0547 553 :AQSI 1szwA 326 :AGSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=106788 # 1w5rA.548.239 read from T0547.t06.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)E552 (1w5rA)S241 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :EGII 1w5rA 237 :IRFD T0547 553 :AQSI 1w5rA 242 :AAQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106790 # 1q9jA.548.390 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)E548 (1q9jA)E391 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1q9jA)H392 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1q9jA)E398 because L (left) conformation "forbidden" or filtered. T0547 550 :IIEAQ 1q9jA 393 :HGHIA T0547 556 :I 1q9jA 399 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=106792 # 1y0hA.548.58 read from T0547.t06.many.frag # found chain 1y0hA in training set Warning: unaligning (T0547)G549 (1y0hA)E57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1y0hA)S61 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :E 1y0hA 56 :F T0547 550 :IIE 1y0hA 58 :RYR T0547 554 :QSI 1y0hA 62 :RIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=106795 # 1qnaA.548.172 read from T0547.t06.many.frag # found chain 1qnaA in training set Warning: unaligning (T0547)I551 (1qnaA)K176 because G (3-10) conformation "forbidden" or filtered. T0547 548 :EGI 1qnaA 173 :TGA T0547 552 :EAQSI 1qnaA 177 :MRDET Number of specific fragments extracted= 2 number of extra gaps= 1 total=106797 # 1c1yB.548.15 read from T0547.t06.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)E548 (1c1yB)V70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G549 (1c1yB)N71 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1c1yB)G75 because T (delta_L) conformation "forbidden" or filtered. T0547 550 :IIE 1c1yB 72 :VRN T0547 554 :QSI 1c1yB 76 :MSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=106799 # 2aeuA.548.301 read from T0547.t06.many.frag # found chain 2aeuA in training set Warning: unaligning (T0547)G549 (2aeuA)R303 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :E 2aeuA 302 :K T0547 550 :IIEAQSI 2aeuA 304 :VYKDDTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=106801 # 2ab5A.548.215 read from T0547.t06.many.frag # found chain 2ab5A in template set Warning: unaligning (T0547)G549 (2ab5A)T465 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (2ab5A)S468 because P (beta_P) conformation "forbidden" or filtered. T0547 548 :E 2ab5A 464 :M T0547 550 :II 2ab5A 466 :TK T0547 553 :AQSI 2ab5A 469 :INDI Number of specific fragments extracted= 3 number of extra gaps= 2 total=106804 # 1ntvA.548.116 read from T0547.t06.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)G549 (1ntvA)A140 because E (beta_S) conformation "forbidden" or filtered. T0547 548 :E 1ntvA 139 :V T0547 550 :IIEAQSI 1ntvA 141 :IKTAQAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=106806 # 1mzgA.548.69 read from T0547.t06.many.frag # found chain 1mzgA in template set T0547 548 :EGIIEAQSI 1mzgA 70 :QGDSDAAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106807 # 1d8hA.548.255 read from T0547.t06.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)G549 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)E496 Warning: unaligning (T0547)I550 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)E496 Warning: unaligning (T0547)Q554 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)A501 Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 T0547 548 :E 1d8hA 494 :E T0547 551 :IEA 1d8hA 497 :INT Number of specific fragments extracted= 2 number of extra gaps= 2 total=106809 # 1wvqA.548.134 read from T0547.t06.many.frag # found chain 1wvqA in training set Warning: unaligning (T0547)G549 (1wvqA)G136 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :E 1wvqA 135 :V T0547 550 :IIEAQSI 1wvqA 137 :VVDGHSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=106811 # 1xkrA.548.186 read from T0547.t06.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)G549 (1xkrA)M187 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1xkrA)P191 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1xkrA)G192 because T (delta_L) conformation "forbidden" or filtered. T0547 548 :E 1xkrA 186 :M T0547 550 :IIE 1xkrA 188 :IPK T0547 555 :SI 1xkrA 193 :YL Number of specific fragments extracted= 3 number of extra gaps= 2 total=106814 # 1ik9A.548.43 read from T0547.t06.many.frag # found chain 1ik9A in template set Warning: unaligning (T0547)G549 (1ik9A)G45 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1ik9A)S48 because P (beta_P) conformation "forbidden" or filtered. T0547 548 :E 1ik9A 44 :T T0547 550 :II 1ik9A 46 :TV T0547 553 :AQSI 1ik9A 49 :ESEI Number of specific fragments extracted= 3 number of extra gaps= 2 total=106817 # 1g8mA.548.443 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)G549 (1g8mA)I445 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1g8mA)G448 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1g8mA)Q450 because G (3-10) conformation "forbidden" or filtered. T0547 548 :E 1g8mA 444 :G T0547 550 :II 1g8mA 446 :GA T0547 553 :A 1g8mA 449 :Q T0547 555 :SI 1g8mA 451 :SR Number of specific fragments extracted= 4 number of extra gaps= 3 total=106821 # 1r6jA.548.27 read from T0547.t06.many.frag # found chain 1r6jA in training set Warning: unaligning (T0547)E552 (1r6jA)K223 because P (beta_P) conformation "forbidden" or filtered. T0547 548 :EGII 1r6jA 219 :TSIV T0547 553 :AQSI 1r6jA 224 :DSSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=106823 # 1dq3A.548.296 read from T0547.t06.many.frag # found chain 1dq3A in template set T0547 548 :EGIIEAQSI 1dq3A 297 :VLHVEEYSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=106824 # 1gtkA.548.274 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)G549 (1gtkA)R276 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1gtkA)D282 because G (3-10) conformation "forbidden" or filtered. T0547 548 :E 1gtkA 275 :E T0547 550 :IIEAQ 1gtkA 277 :RGAPQ T0547 556 :I 1gtkA 283 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=106827 # 1a7j.548.259 read from T0547.t06.many.frag # found chain 1a7j in template set Warning: unaligning (T0547)E552 (1a7j)P264 because P (beta_P) conformation "forbidden" or filtered. T0547 548 :EGII 1a7j 260 :SIVV T0547 553 :AQSI 1a7j 265 :GNKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=106829 # 7ahlA.548.98 read from T0547.t06.many.frag # found chain 7ahlA in template set Warning: unaligning (T0547)I550 (7ahlA)Y101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (7ahlA)P103 because C (cis) conformation "forbidden" or filtered. T0547 548 :EG 7ahlA 99 :SD T0547 551 :I 7ahlA 102 :Y T0547 553 :AQSI 7ahlA 104 :RNSI Number of specific fragments extracted= 3 number of extra gaps= 2 total=106832 # 1s3sG.548.66 read from T0547.t06.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)G549 (1s3sG)K311 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1s3sG)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 548 :E 1s3sG 310 :Q T0547 550 :IIEA 1s3sG 312 :FNHS T0547 555 :SI 1s3sG 317 :RI Number of specific fragments extracted= 3 number of extra gaps= 2 total=106835 # 1zupA.549.132 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 549 :GIIEAQSIL 1zupA 121 :VVKEGKDAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=106836 # 2a6aA.549.147 read from T0547.t06.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)G549 (2a6aA)S136 because Y (epsilon') conformation "forbidden" or filtered. T0547 550 :IIEAQSIL 2a6aA 137 :VVSDEELE Number of specific fragments extracted= 1 number of extra gaps= 1 total=106837 # 1gutA.549.36 read from T0547.t06.many.frag # found chain 1gutA in training set Warning: unaligning (T0547)E552 (1gutA)S40 because P (beta_P) conformation "forbidden" or filtered. T0547 549 :GII 1gutA 37 :SII T0547 553 :AQSIL 1gutA 41 :LDSVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=106839 # 1d8hA.549.256 read from T0547.t06.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)G549 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)E496 Warning: unaligning (T0547)I550 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)E496 Warning: unaligning (T0547)Q554 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)A501 Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 551 :IEA 1d8hA 497 :INT Number of specific fragments extracted= 1 number of extra gaps= 2 total=106840 # 1a7j.549.260 read from T0547.t06.many.frag # found chain 1a7j in template set Warning: unaligning (T0547)E552 (1a7j)P264 because P (beta_P) conformation "forbidden" or filtered. T0547 549 :GII 1a7j 261 :IVV T0547 553 :AQSIL 1a7j 265 :GNKLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=106842 # 1ooyA.549.448 read from T0547.t06.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. T0547 549 :GIIE 1ooyA 449 :ELWE T0547 554 :QSIL 1ooyA 454 :LTVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=106844 # 2bt6A.549.21 read from T0547.t06.many.frag # found chain 2bt6A in training set Warning: unaligning (T0547)A553 (2bt6A)G26 because T (delta_L) conformation "forbidden" or filtered. T0547 549 :GIIE 2bt6A 22 :KGKI T0547 554 :QSIL 2bt6A 27 :DSLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=106846 # 1kyfA.549.227 read from T0547.t06.many.frag # found chain 1kyfA in training set Warning: unaligning (T0547)G549 (1kyfA)L919 because E (beta_S) conformation "forbidden" or filtered. T0547 550 :IIEAQSIL 1kyfA 920 :RTSKDTVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=106847 # 1yc61.549.72 read from T0547.t06.many.frag # found chain 1yc61 in template set T0547 549 :GIIEAQSIL 1yc61 108 :VAEKQAQAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=106848 # 2ab5A.549.216 read from T0547.t06.many.frag # found chain 2ab5A in template set Warning: unaligning (T0547)G549 (2ab5A)T465 because E (beta_S) conformation "forbidden" or filtered. T0547 550 :IIEAQSIL 2ab5A 466 :TKSINDIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=106849 # 1mzgA.549.70 read from T0547.t06.many.frag # found chain 1mzgA in template set T0547 549 :GIIEAQSIL 1mzgA 71 :GDSDAAIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=106850 # 1c1yB.549.16 read from T0547.t06.many.frag # found chain 1c1yB in template set Warning: unaligning (T0547)G549 (1c1yB)N71 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :IIEAQSIL 1c1yB 72 :VRNGMSLH Number of specific fragments extracted= 1 number of extra gaps= 1 total=106851 # 1vr9A.549.116 read from T0547.t06.many.frag # found chain 1vr9A in training set T0547 549 :GIIEAQSIL 1vr9A 105 :GAVSLHDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106852 # 1bupA.549.294 read from T0547.t06.many.frag # found chain 1bupA in training set T0547 549 :GIIEAQSIL 1bupA 295 :TSITRARFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=106853 # 1ik9A.549.44 read from T0547.t06.many.frag # found chain 1ik9A in template set T0547 549 :GIIEAQSIL 1ik9A 45 :GTVSESEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=106854 # 1gtkA.549.275 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)E552 (1gtkA)A279 because P (beta_P) conformation "forbidden" or filtered. T0547 549 :GII 1gtkA 276 :RRG T0547 553 :AQSIL 1gtkA 280 :PQDAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=106856 # 1y0hA.549.59 read from T0547.t06.many.frag # found chain 1y0hA in training set Warning: unaligning (T0547)A553 (1y0hA)S61 because Y (epsilon') conformation "forbidden" or filtered. T0547 549 :GIIE 1y0hA 57 :ERYR T0547 554 :QSIL 1y0hA 62 :RIAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=106858 # 1d5yA.549.226 read from T0547.t06.many.frag # found chain 1d5yA in template set Warning: unaligning (T0547)G549 (1d5yA)Y229 because E (beta_S) conformation "forbidden" or filtered. T0547 550 :IIEAQSIL 1d5yA 230 :EGLGTGVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=106859 # 1o65A.549.175 read from T0547.t06.many.frag # found chain 1o65A in template set T0547 549 :GIIEAQSIL 1o65A 174 :SRVSDVTVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=106860 # 1w5rA.549.240 read from T0547.t06.many.frag # found chain 1w5rA in training set T0547 549 :GIIEAQSIL 1w5rA 238 :RFDSAAQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106861 # 1g8mA.549.444 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 549 :GIIEAQSIL 1g8mA 445 :IGAGQQSRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=106862 # 1szwA.549.343 read from T0547.t06.many.frag # found chain 1szwA in template set Warning: unaligning (T0547)Q554 (1szwA)G327 because T (delta_L) conformation "forbidden" or filtered. T0547 549 :GIIEA 1szwA 322 :FWLPA T0547 555 :SIL 1szwA 328 :SFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=106864 # 1q9jA.549.391 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)I551 (1q9jA)G394 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)E552 (1q9jA)H395 because N (gamma') conformation "forbidden" or filtered. T0547 549 :GI 1q9jA 392 :HH T0547 553 :AQSIL 1q9jA 396 :IAEPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=106866 # 1dq3A.549.297 read from T0547.t06.many.frag # found chain 1dq3A in template set Warning: unaligning (T0547)G549 (1dq3A)L298 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :IIEAQSIL 1dq3A 299 :HVEEYSSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=106867 # 1ntvA.549.117 read from T0547.t06.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)E552 (1ntvA)T143 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1ntvA)A146 because P (beta_P) conformation "forbidden" or filtered. T0547 549 :GII 1ntvA 140 :AIK T0547 553 :AQ 1ntvA 144 :AQ T0547 556 :IL 1ntvA 147 :AE Number of specific fragments extracted= 3 number of extra gaps= 2 total=106870 # 1xkrA.549.187 read from T0547.t06.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)Q554 (1xkrA)G192 because T (delta_L) conformation "forbidden" or filtered. T0547 549 :GIIEA 1xkrA 187 :MIPKP T0547 555 :SIL 1xkrA 193 :YLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106872 # 1qnaA.549.173 read from T0547.t06.many.frag # found chain 1qnaA in training set T0547 549 :GIIEAQSIL 1qnaA 174 :GAKMRDETY Number of specific fragments extracted= 1 number of extra gaps= 0 total=106873 # 1rylA.549.85 read from T0547.t06.many.frag # found chain 1rylA in training set T0547 549 :GIIEAQSIL 1rylA 86 :GLTWNQELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106874 # 1s3sG.549.67 read from T0547.t06.many.frag # found chain 1s3sG in template set Warning: unaligning (T0547)A553 (1s3sG)S315 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1s3sG)H316 because Y (epsilon') conformation "forbidden" or filtered. T0547 549 :GIIE 1s3sG 311 :KFNH T0547 555 :SIL 1s3sG 317 :RIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=106876 # 1k4iA.549.191 read from T0547.t06.many.frag # found chain 1k4iA in training set Warning: unaligning (T0547)A553 (1k4iA)G196 because S (epsilon) conformation "forbidden" or filtered. T0547 549 :GIIE 1k4iA 192 :GMLR T0547 554 :QSIL 1k4iA 197 :DECV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106878 # 1zupA.550.133 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 550 :IIEAQSILD 1zupA 122 :VKEGKDAMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=106879 # 2a6aA.550.148 read from T0547.t06.many.frag # found chain 2a6aA in template set T0547 550 :IIEAQSILD 2a6aA 137 :VVSDEELEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=106880 # 1d8hA.550.257 read from T0547.t06.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)I550 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)E496 Warning: unaligning (T0547)Q554 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)A501 Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 551 :IEA 1d8hA 497 :INT T0547 558 :D 1d8hA 504 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=106882 # 2ab5A.550.217 read from T0547.t06.many.frag # found chain 2ab5A in template set T0547 550 :IIEAQSILD 2ab5A 466 :TKSINDIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=106883 # 1a7j.550.261 read from T0547.t06.many.frag # found chain 1a7j in template set Warning: unaligning (T0547)E552 (1a7j)P264 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1a7j)K267 because G (3-10) conformation "forbidden" or filtered. T0547 550 :II 1a7j 262 :VV T0547 553 :AQ 1a7j 265 :GN T0547 556 :ILD 1a7j 268 :LDL Number of specific fragments extracted= 3 number of extra gaps= 2 total=106886 # 2bt6A.550.22 read from T0547.t06.many.frag # found chain 2bt6A in training set Warning: unaligning (T0547)E552 (2bt6A)I25 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 2bt6A 23 :GK T0547 553 :AQSILD 2bt6A 26 :GDSLLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=106888 # 1c1yB.550.17 read from T0547.t06.many.frag # found chain 1c1yB in template set T0547 550 :IIEAQSILD 1c1yB 72 :VRNGMSLHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=106889 # 1ooyA.550.449 read from T0547.t06.many.frag # found chain 1ooyA in training set Warning: unaligning (T0547)A553 (1ooyA)G453 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1ooyA)L454 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :IIE 1ooyA 450 :LWE T0547 555 :SILD 1ooyA 455 :TVDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=106891 # 1yc61.550.73 read from T0547.t06.many.frag # found chain 1yc61 in template set Warning: unaligning (T0547)E552 (1yc61)K111 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 1yc61 109 :AE T0547 553 :AQSILD 1yc61 112 :QAQAEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=106893 # 1o65A.550.176 read from T0547.t06.many.frag # found chain 1o65A in template set T0547 550 :IIEAQSILD 1o65A 175 :RVSDVTVQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=106894 # 1mzgA.550.71 read from T0547.t06.many.frag # found chain 1mzgA in template set Warning: unaligning (T0547)I550 (1mzgA)D72 because Y (epsilon') conformation "forbidden" or filtered. T0547 551 :IEAQSILD 1mzgA 73 :SDAAIVKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=106895 # 1d5yA.550.227 read from T0547.t06.many.frag # found chain 1d5yA in template set Warning: unaligning (T0547)E552 (1d5yA)L232 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 1d5yA 230 :EG T0547 553 :AQSILD 1d5yA 233 :GTGVQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=106897 # 1kyfA.550.228 read from T0547.t06.many.frag # found chain 1kyfA in training set T0547 550 :IIEAQSILD 1kyfA 920 :RTSKDTVSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=106898 # 1w5rA.550.241 read from T0547.t06.many.frag # found chain 1w5rA in training set Warning: unaligning (T0547)E552 (1w5rA)S241 because Y (epsilon') conformation "forbidden" or filtered. T0547 550 :II 1w5rA 239 :FD T0547 553 :AQSILD 1w5rA 242 :AAQVLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=106900 # 1gutA.550.37 read from T0547.t06.many.frag # found chain 1gutA in training set T0547 550 :IIEAQSILD 1gutA 38 :IISLDSVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=106901 # 1rylA.550.86 read from T0547.t06.many.frag # found chain 1rylA in training set T0547 550 :IIEAQSILD 1rylA 87 :LTWNQELAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106902 # 1dmlA.550.267 read from T0547.t06.many.frag # found chain 1dmlA in template set T0547 550 :IIEAQSILD 1dmlA 268 :VVDDCSMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106903 # 1xkrA.550.188 read from T0547.t06.many.frag # found chain 1xkrA in training set T0547 550 :IIEAQSILD 1xkrA 188 :IPKPGYLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=106904 # 1vr9A.550.117 read from T0547.t06.many.frag # found chain 1vr9A in training set T0547 550 :IIEAQSILD 1vr9A 106 :AVSLHDFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=106905 # 1gtkA.550.276 read from T0547.t06.many.frag # found chain 1gtkA in training set Warning: unaligning (T0547)S555 (1gtkA)D282 because G (3-10) conformation "forbidden" or filtered. T0547 550 :IIEAQ 1gtkA 277 :RGAPQ T0547 556 :ILD 1gtkA 283 :AEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=106907 # 1k4iA.550.192 read from T0547.t06.many.frag # found chain 1k4iA in training set T0547 550 :IIEAQSILD 1k4iA 193 :MLRGDECVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106908 # 1q9jA.550.392 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)I551 (1q9jA)G394 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1q9jA)E398 because L (left) conformation "forbidden" or filtered. T0547 550 :I 1q9jA 393 :H T0547 552 :EAQ 1q9jA 395 :HIA T0547 556 :ILD 1q9jA 399 :PGK Number of specific fragments extracted= 3 number of extra gaps= 2 total=106911 # 1g8mA.550.445 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)E552 (1g8mA)G448 because L (left) conformation "forbidden" or filtered. T0547 550 :II 1g8mA 446 :GA T0547 553 :AQSILD 1g8mA 449 :QQSRIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=106913 # 1ukfA.550.153 read from T0547.t06.many.frag # found chain 1ukfA in training set Warning: unaligning (T0547)I551 (1ukfA)S235 because Y (epsilon') conformation "forbidden" or filtered. T0547 550 :I 1ukfA 234 :Q T0547 552 :EAQSILD 1ukfA 236 :SRSAAPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=106915 # 1xk5A.550.179 read from T0547.t06.many.frag # found chain 1xk5A in template set T0547 550 :IIEAQSILD 1xk5A 276 :WLRPYMVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=106916 # 1n8kA.550.348 read from T0547.t06.many.frag # found chain 1n8kA in training set T0547 550 :IIEAQSILD 1n8kA 349 :VLPFEKINE Number of specific fragments extracted= 1 number of extra gaps= 0 total=106917 # 1ik9A.550.45 read from T0547.t06.many.frag # found chain 1ik9A in template set Warning: unaligning (T0547)E552 (1ik9A)S48 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 1ik9A 46 :TV T0547 553 :AQSILD 1ik9A 49 :ESEISQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=106919 # 1ntvA.550.118 read from T0547.t06.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)E552 (1ntvA)T143 because P (beta_P) conformation "forbidden" or filtered. T0547 550 :II 1ntvA 141 :IK T0547 553 :AQSILD 1ntvA 144 :AQAAEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=106921 # 1l1lA.550.691 read from T0547.t06.many.frag # found chain 1l1lA in training set T0547 550 :IIEAQSILD 1l1lA 692 :PIDKETYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=106922 # 1ra0A.550.381 read from T0547.t06.many.frag # found chain 1ra0A in training set T0547 550 :IIEAQSILD 1ra0A 378 :ILPAENGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=106923 # 1zupA.551.134 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 551 :IEAQSILDT 1zupA 123 :KEGKDAMQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=106924 # 1d8hA.551.258 read from T0547.t06.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)Q554 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)A501 Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 551 :IEA 1d8hA 497 :INT T0547 558 :DT 1d8hA 504 :NA Number of specific fragments extracted= 2 number of extra gaps= 1 total=106926 # 2a6aA.551.149 read from T0547.t06.many.frag # found chain 2a6aA in template set T0547 551 :IEAQSILDT 2a6aA 138 :VSDEELEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=106927 # 1o65A.551.177 read from T0547.t06.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)E552 (1o65A)S177 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1o65A)D178 because G (3-10) conformation "forbidden" or filtered. T0547 551 :I 1o65A 176 :V T0547 554 :QSILDT 1o65A 179 :VTVQEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=106929 # 2bt6A.551.23 read from T0547.t06.many.frag # found chain 2bt6A in training set Warning: unaligning (T0547)A553 (2bt6A)G26 because T (delta_L) conformation "forbidden" or filtered. T0547 551 :IE 2bt6A 24 :KI T0547 554 :QSILDT 2bt6A 27 :DSLLDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106931 # 1dmlA.551.268 read from T0547.t06.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)Q554 (1dmlA)C272 because L (left) conformation "forbidden" or filtered. T0547 551 :IEA 1dmlA 269 :VDD T0547 555 :SILDT 1dmlA 273 :SMRAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106933 # 2ab5A.551.218 read from T0547.t06.many.frag # found chain 2ab5A in template set T0547 551 :IEAQSILDT 2ab5A 467 :KSINDIKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106934 # 1a7j.551.262 read from T0547.t06.many.frag # found chain 1a7j in template set T0547 551 :IEAQSILDT 1a7j 263 :VPGNKLDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106935 # 1yc61.551.74 read from T0547.t06.many.frag # found chain 1yc61 in template set T0547 551 :IEAQSILDT 1yc61 110 :EKQAQAEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106936 # 1c1yB.551.18 read from T0547.t06.many.frag # found chain 1c1yB in template set T0547 551 :IEAQSILDT 1c1yB 73 :RNGMSLHDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=106937 # 1k4iA.551.193 read from T0547.t06.many.frag # found chain 1k4iA in training set T0547 551 :IEAQSILDT 1k4iA 194 :LRGDECVAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=106938 # 1xkrA.551.189 read from T0547.t06.many.frag # found chain 1xkrA in training set Warning: unaligning (T0547)E552 (1xkrA)K190 because P (beta_P) conformation "forbidden" or filtered. T0547 551 :I 1xkrA 189 :P T0547 553 :AQSILDT 1xkrA 191 :PGYLVKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=106940 # 1d5yA.551.228 read from T0547.t06.many.frag # found chain 1d5yA in template set T0547 551 :IEAQSILDT 1d5yA 231 :GLGTGVQEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=106941 # 1xewX.551.120 read from T0547.t06.many.frag # found chain 1xewX in template set T0547 551 :IEAQSILDT 1xewX 121 :ATRSEILDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=106942 # 1g8mA.551.446 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)E552 (1g8mA)G448 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Q554 (1g8mA)Q450 because G (3-10) conformation "forbidden" or filtered. T0547 551 :I 1g8mA 447 :A T0547 553 :A 1g8mA 449 :Q T0547 555 :SILDT 1g8mA 451 :SRIHC Number of specific fragments extracted= 3 number of extra gaps= 2 total=106945 # 1p99A.551.246 read from T0547.t06.many.frag # found chain 1p99A in template set T0547 551 :IEAQSILDT 1p99A 247 :LDNKTYAKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=106946 # 1rylA.551.87 read from T0547.t06.many.frag # found chain 1rylA in training set T0547 551 :IEAQSILDT 1rylA 88 :TWNQELAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=106947 2vsgA expands to /projects/compbio/data/pdb/2vsg.pdb.gz 2vsgA:# 2vsgA.551.257 read from T0547.t06.many.frag # adding 2vsgA to template set # found chain 2vsgA in template set T0547 551 :IEAQSILDT 2vsgA 258 :KPGQTEVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=106948 # 1w5rA.551.242 read from T0547.t06.many.frag # found chain 1w5rA in training set T0547 551 :IEAQSILDT 1w5rA 240 :DSAAQVLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106949 # 1dlwA.551.58 read from T0547.t06.many.frag # found chain 1dlwA in training set T0547 551 :IEAQSILDT 1dlwA 59 :WTGRNLKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106950 # 2bnxA.551.213 read from T0547.t06.many.frag # found chain 2bnxA in template set T0547 551 :IEAQSILDT 2bnxA 344 :IENEDMKVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=106951 # 1ntvA.551.119 read from T0547.t06.many.frag # found chain 1ntvA in training set Warning: unaligning (T0547)Q554 (1ntvA)Q145 because Y (epsilon') conformation "forbidden" or filtered. T0547 551 :IEA 1ntvA 142 :KTA T0547 555 :SILDT 1ntvA 146 :AAEPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=106953 # 1k6kA.551.34 read from T0547.t06.many.frag # found chain 1k6kA in training set T0547 551 :IEAQSILDT 1k6kA 35 :LSNPSAREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106954 # 1w79A.551.281 read from T0547.t06.many.frag # found chain 1w79A in training set T0547 551 :IEAQSILDT 1w79A 282 :HTSAELSEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=106955 # 1w2yA.551.195 read from T0547.t06.many.frag # found chain 1w2yA in training set T0547 551 :IEAQSILDT 1w2yA 196 :WNGKEDNEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106956 # 1tv9A.551.310 read from T0547.t06.many.frag # found chain 1tv9A in template set Warning: unaligning (T0547)S555 (1tv9A)S315 because Y (epsilon') conformation "forbidden" or filtered. T0547 551 :IEAQ 1tv9A 311 :LPVD T0547 556 :ILDT 1tv9A 316 :EKDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=106958 # 1q9jA.551.393 read from T0547.t06.many.frag # found chain 1q9jA in template set Warning: unaligning (T0547)S555 (1q9jA)E398 because L (left) conformation "forbidden" or filtered. T0547 551 :IEAQ 1q9jA 394 :GHIA T0547 556 :ILDT 1q9jA 399 :PGKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=106960 # 1us5A.551.255 read from T0547.t06.many.frag # found chain 1us5A in training set T0547 551 :IEAQSILDT 1us5A 256 :LSEETVYKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=106961 # 1no7A.551.419 read from T0547.t06.many.frag # found chain 1no7A in template set T0547 551 :IEAQSILDT 1no7A 870 :LVANTVNAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=106962 # 1otkA.551.114 read from T0547.t06.many.frag # found chain 1otkA in template set T0547 551 :IEAQSILDT 1otkA 115 :SRDPQLAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=106963 # 1dmlA.552.269 read from T0547.t06.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)Q554 (1dmlA)C272 because L (left) conformation "forbidden" or filtered. T0547 552 :EA 1dmlA 270 :DD T0547 555 :SILDTL 1dmlA 273 :SMRAVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=106965 # 1d8hA.552.259 read from T0547.t06.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)Q554 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)A501 Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 552 :EA 1d8hA 498 :NT T0547 558 :DTL 1d8hA 504 :NAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=106967 # 1zupA.552.135 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)A553 (1zupA)G125 because P (beta_P) conformation "forbidden" or filtered. T0547 552 :E 1zupA 124 :E T0547 554 :QSILDTL 1zupA 126 :KDAMQSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=106969 # 1o65A.552.178 read from T0547.t06.many.frag # found chain 1o65A in template set Warning: unaligning (T0547)E552 (1o65A)S177 because Y (epsilon') conformation "forbidden" or filtered. T0547 553 :AQSILDTL 1o65A 178 :DVTVQEAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=106970 # 1yc61.552.75 read from T0547.t06.many.frag # found chain 1yc61 in template set T0547 552 :EAQSILDTL 1yc61 111 :KQAQAEAAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=106971 # 1xewX.552.121 read from T0547.t06.many.frag # found chain 1xewX in template set T0547 552 :EAQSILDTL 1xewX 122 :TRSEILDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106972 # 2a6aA.552.150 read from T0547.t06.many.frag # found chain 2a6aA in template set Warning: unaligning (T0547)E552 (2a6aA)S139 because P (beta_P) conformation "forbidden" or filtered. T0547 553 :AQSILDTL 2a6aA 140 :DEELEEIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=106973 # 2bt6A.552.24 read from T0547.t06.many.frag # found chain 2bt6A in training set T0547 552 :EAQSILDTL 2bt6A 25 :IGDSLLDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106974 # 2ab5A.552.219 read from T0547.t06.many.frag # found chain 2ab5A in template set T0547 552 :EAQSILDTL 2ab5A 468 :SINDIKNVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106975 # 1y42X.552.321 read from T0547.t06.many.frag # found chain 1y42X in template set Warning: unaligning (T0547)S555 (1y42X)E356 because G (3-10) conformation "forbidden" or filtered. T0547 552 :EAQ 1y42X 353 :SDQ T0547 556 :ILDTL 1y42X 357 :VENLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=106977 # 2vsgA.552.258 read from T0547.t06.many.frag # found chain 2vsgA in template set T0547 552 :EAQSILDTL 2vsgA 259 :PGQTEVETM Number of specific fragments extracted= 1 number of extra gaps= 0 total=106978 # 2bnxA.552.214 read from T0547.t06.many.frag # found chain 2bnxA in template set Warning: unaligning (T0547)E552 (2bnxA)E345 because N (gamma') conformation "forbidden" or filtered. T0547 553 :AQSILDTL 2bnxA 346 :NEDMKVQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=106979 # 1ra0A.552.383 read from T0547.t06.many.frag # found chain 1ra0A in training set T0547 552 :EAQSILDTL 1ra0A 380 :PAENGFDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106980 # 1p99A.552.247 read from T0547.t06.many.frag # found chain 1p99A in template set T0547 552 :EAQSILDTL 1p99A 248 :DNKTYAKIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106981 # 1us5A.552.256 read from T0547.t06.many.frag # found chain 1us5A in training set T0547 552 :EAQSILDTL 1us5A 257 :SEETVYKFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=106982 # 1a7j.552.263 read from T0547.t06.many.frag # found chain 1a7j in template set T0547 552 :EAQSILDTL 1a7j 264 :PGNKLDLAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=106983 # 1qgiA.552.181 read from T0547.t06.many.frag # found chain 1qgiA in training set Warning: unaligning (T0547)S555 (1qgiA)T185 because P (beta_P) conformation "forbidden" or filtered. T0547 552 :EAQ 1qgiA 182 :GSD T0547 556 :ILDTL 1qgiA 186 :LQGLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=106985 # 1w2yA.552.196 read from T0547.t06.many.frag # found chain 1w2yA in training set Warning: unaligning (T0547)E552 (1w2yA)N197 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1w2yA)G198 because T (delta_L) conformation "forbidden" or filtered. T0547 554 :QSILDTL 1w2yA 199 :KEDNEVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=106986 # 1c1yB.552.19 read from T0547.t06.many.frag # found chain 1c1yB in template set T0547 552 :EAQSILDTL 1c1yB 74 :NGMSLHDCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106987 # 1dljA.552.275 read from T0547.t06.many.frag # found chain 1dljA in training set T0547 552 :EAQSILDTL 1dljA 276 :PQTLIEAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=106988 # 1l8aA.552.829 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)E552 (1l8aA)R830 because Y (epsilon') conformation "forbidden" or filtered. T0547 553 :AQSILDTL 1l8aA 831 :SDSRENLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=106989 # 1g8mA.552.447 read from T0547.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0547)E552 (1g8mA)G448 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1g8mA)Q449 because P (beta_P) conformation "forbidden" or filtered. T0547 554 :QSILDTL 1g8mA 450 :QSRIHCT Number of specific fragments extracted= 1 number of extra gaps= 1 total=106990 # 1ooyA.552.451 read from T0547.t06.many.frag # found chain 1ooyA in training set T0547 552 :EAQSILDTL 1ooyA 452 :EGLTVDDIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=106991 # 1d5yA.552.229 read from T0547.t06.many.frag # found chain 1d5yA in template set Warning: unaligning (T0547)E552 (1d5yA)L232 because P (beta_P) conformation "forbidden" or filtered. T0547 553 :AQSILDTL 1d5yA 233 :GTGVQEFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=106992 # 1dlwA.552.59 read from T0547.t06.many.frag # found chain 1dlwA in training set T0547 552 :EAQSILDTL 1dlwA 60 :TGRNLKEVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=106993 # 1k4iA.552.194 read from T0547.t06.many.frag # found chain 1k4iA in training set Warning: unaligning (T0547)A553 (1k4iA)G196 because S (epsilon) conformation "forbidden" or filtered. T0547 552 :E 1k4iA 195 :R T0547 554 :QSILDTL 1k4iA 197 :DECVAFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=106995 # 1b4fA.552.9 read from T0547.t06.many.frag # found chain 1b4fA in template set Warning: unaligning (T0547)E552 (1b4fA)S10 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)A553 (1b4fA)F11 because Y (epsilon') conformation "forbidden" or filtered. T0547 554 :QSILDTL 1b4fA 12 :NTVDEWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=106996 # 1w2xA.552.688 read from T0547.t06.many.frag # found chain 1w2xA in template set T0547 552 :EAQSILDTL 1w2xA 2164 :DHEDDRQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106997 # 1w79A.552.282 read from T0547.t06.many.frag # found chain 1w79A in training set Warning: unaligning (T0547)E552 (1w79A)T283 because E (beta_S) conformation "forbidden" or filtered. T0547 553 :AQSILDTL 1w79A 284 :SAELSEIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=106998 # 1sw5B.552.225 read from T0547.t06.many.frag # found chain 1sw5B in template set T0547 552 :EAQSILDTL 1sw5B 226 :KDEKLISVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=106999 # 1dmlA.553.270 read from T0547.t06.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)Q554 (1dmlA)C272 because L (left) conformation "forbidden" or filtered. T0547 553 :A 1dmlA 271 :D T0547 555 :SILDTLE 1dmlA 273 :SMRAVLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=107001 # 1d8hA.553.260 read from T0547.t06.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)Q554 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)A501 Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 553 :A 1d8hA 499 :T T0547 558 :DTLE 1d8hA 504 :NAFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=107003 # 1xewX.553.122 read from T0547.t06.many.frag # found chain 1xewX in template set T0547 553 :AQSILDTLE 1xewX 123 :RSEILDILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107004 # 1o65A.553.179 read from T0547.t06.many.frag # found chain 1o65A in template set T0547 553 :AQSILDTLE 1o65A 178 :DVTVQEAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107005 # 1sw5B.553.226 read from T0547.t06.many.frag # found chain 1sw5B in template set T0547 553 :AQSILDTLE 1sw5B 227 :DEKLISVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107006 # 1zupA.553.136 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 553 :AQSILDTLE 1zupA 125 :GKDAMQSID Number of specific fragments extracted= 1 number of extra gaps= 0 total=107007 # 2ab5A.553.220 read from T0547.t06.many.frag # found chain 2ab5A in template set T0547 553 :AQSILDTLE 2ab5A 469 :INDIKNVVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=107008 # 2bnxA.553.215 read from T0547.t06.many.frag # found chain 2bnxA in template set T0547 553 :AQSILDTLE 2bnxA 346 :NEDMKVQLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=107009 # 1us5A.553.257 read from T0547.t06.many.frag # found chain 1us5A in training set T0547 553 :AQSILDTLE 1us5A 258 :EETVYKFMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107010 # 2a6aA.553.151 read from T0547.t06.many.frag # found chain 2a6aA in template set T0547 553 :AQSILDTLE 2a6aA 140 :DEELEEITK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107011 # 1y1pA.553.310 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)A553 (1y1pA)T312 because G (3-10) conformation "forbidden" or filtered. T0547 554 :QSILDTLE 1y1pA 313 :APSLEILK Number of specific fragments extracted= 1 number of extra gaps= 1 total=107012 # 2bvcA.553.427 read from T0547.t06.many.frag # found chain 2bvcA in template set Warning: unaligning (T0547)S555 (2bvcA)Q422 because Y (epsilon') conformation "forbidden" or filtered. T0547 553 :AQ 2bvcA 420 :PT T0547 556 :ILDTLE 2bvcA 423 :LSDVID Number of specific fragments extracted= 2 number of extra gaps= 1 total=107014 # 1k6kA.553.36 read from T0547.t06.many.frag # found chain 1k6kA in training set T0547 553 :AQSILDTLE 1k6kA 37 :NPSAREALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107015 # 2vsgA.553.259 read from T0547.t06.many.frag # found chain 2vsgA in template set T0547 553 :AQSILDTLE 2vsgA 260 :GQTEVETMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107016 # 1qgiA.553.182 read from T0547.t06.many.frag # found chain 1qgiA in training set T0547 553 :AQSILDTLE 1qgiA 183 :SDTLQGLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107017 # 1yc61.553.76 read from T0547.t06.many.frag # found chain 1yc61 in template set T0547 553 :AQSILDTLE 1yc61 112 :QAQAEAAFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107018 # 1ra0A.553.384 read from T0547.t06.many.frag # found chain 1ra0A in training set Warning: unaligning (T0547)A553 (1ra0A)A381 because Y (epsilon') conformation "forbidden" or filtered. T0547 554 :QSILDTLE 1ra0A 382 :ENGFDALR Number of specific fragments extracted= 1 number of extra gaps= 1 total=107019 # 1p99A.553.248 read from T0547.t06.many.frag # found chain 1p99A in template set T0547 553 :AQSILDTLE 1p99A 249 :NKTYAKIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107020 # 1l8aA.553.830 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)Q554 (1l8aA)D832 because Y (epsilon') conformation "forbidden" or filtered. T0547 553 :A 1l8aA 831 :S T0547 555 :SILDTLE 1l8aA 833 :SRENLRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=107022 # 2a2cA.553.284 read from T0547.t06.many.frag # found chain 2a2cA in training set T0547 553 :AQSILDTLE 2a2cA 265 :VLRLEEVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107023 # 2bt6A.553.25 read from T0547.t06.many.frag # found chain 2bt6A in training set Warning: unaligning (T0547)A553 (2bt6A)G26 because T (delta_L) conformation "forbidden" or filtered. T0547 554 :QSILDTLE 2bt6A 27 :DSLLDVVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=107024 # 1i3jA.553.82 read from T0547.t06.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)A553 (1i3jA)F212 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)S555 (1i3jA)C214 because Y (epsilon') conformation "forbidden" or filtered. T0547 554 :Q 1i3jA 213 :D T0547 556 :ILDTLE 1i3jA 215 :AADAAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=107026 # 1ta8A.553.236 read from T0547.t06.many.frag # found chain 1ta8A in training set T0547 553 :AQSILDTLE 1ta8A 237 :AKTQFEALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107027 # 1y0uA.553.29 read from T0547.t06.many.frag # found chain 1y0uA in training set T0547 553 :AQSILDTLE 1y0uA 28 :NPVRRKILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107028 # 1rylA.553.89 read from T0547.t06.many.frag # found chain 1rylA in training set T0547 553 :AQSILDTLE 1rylA 90 :NQELAATID Number of specific fragments extracted= 1 number of extra gaps= 0 total=107029 # 1r0pA.553.260 read from T0547.t06.many.frag # found chain 1r0pA in training set T0547 553 :AQSILDTLE 1r0pA 1309 :PDPLYEVML Number of specific fragments extracted= 1 number of extra gaps= 0 total=107030 # 1y42X.553.322 read from T0547.t06.many.frag # found chain 1y42X in template set T0547 553 :AQSILDTLE 1y42X 354 :DQEVENLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107031 # 2b61A.553.300 read from T0547.t06.many.frag # found chain 2b61A in training set T0547 553 :AQSILDTLE 2b61A 282 :YENVKEALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107032 # 1w79A.553.283 read from T0547.t06.many.frag # found chain 1w79A in training set T0547 553 :AQSILDTLE 1w79A 284 :SAELSEILV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107033 # 1a7j.553.264 read from T0547.t06.many.frag # found chain 1a7j in template set T0547 553 :AQSILDTLE 1a7j 265 :GNKLDLAMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107034 # 1dmlA.554.271 read from T0547.t06.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)Q554 (1dmlA)C272 because L (left) conformation "forbidden" or filtered. T0547 555 :SILDTLED 1dmlA 273 :SMRAVLRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=107035 # 1d8hA.554.261 read from T0547.t06.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)Q554 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)A501 Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 558 :DTLED 1d8hA 504 :NAFDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=107036 # 1xewX.554.123 read from T0547.t06.many.frag # found chain 1xewX in template set T0547 554 :QSILDTLED 1xewX 124 :SEILDILTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107037 # 1us5A.554.258 read from T0547.t06.many.frag # found chain 1us5A in training set T0547 554 :QSILDTLED 1us5A 259 :ETVYKFMKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107038 # 1k6kA.554.37 read from T0547.t06.many.frag # found chain 1k6kA in training set T0547 554 :QSILDTLED 1k6kA 38 :PSAREALEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107039 # 2ab5A.554.221 read from T0547.t06.many.frag # found chain 2ab5A in template set T0547 554 :QSILDTLED 2ab5A 470 :NDIKNVVMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107040 # 1sw5B.554.227 read from T0547.t06.many.frag # found chain 1sw5B in template set T0547 554 :QSILDTLED 1sw5B 228 :EKLISVLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107041 # 2bnxA.554.216 read from T0547.t06.many.frag # found chain 2bnxA in template set T0547 554 :QSILDTLED 2bnxA 347 :EDMKVQLCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107042 # 1y1pA.554.311 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 554 :QSILDTLED 1y1pA 313 :APSLEILKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107043 # 1i3jA.554.83 read from T0547.t06.many.frag # found chain 1i3jA in template set T0547 554 :QSILDTLED 1i3jA 213 :DCAADAARH Number of specific fragments extracted= 1 number of extra gaps= 0 total=107044 # 2a2cA.554.285 read from T0547.t06.many.frag # found chain 2a2cA in training set T0547 554 :QSILDTLED 2a2cA 266 :LRLEEVQAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107045 # 2a6aA.554.152 read from T0547.t06.many.frag # found chain 2a6aA in template set T0547 554 :QSILDTLED 2a6aA 141 :EELEEITKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107046 # 1qgiA.554.183 read from T0547.t06.many.frag # found chain 1qgiA in training set Warning: unaligning (T0547)S555 (1qgiA)T185 because P (beta_P) conformation "forbidden" or filtered. T0547 554 :Q 1qgiA 184 :D T0547 556 :ILDTLED 1qgiA 186 :LQGLLAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=107048 # 1o65A.554.180 read from T0547.t06.many.frag # found chain 1o65A in template set T0547 554 :QSILDTLED 1o65A 179 :VTVQEAAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107049 # 1l8aA.554.831 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)Q554 (1l8aA)D832 because Y (epsilon') conformation "forbidden" or filtered. T0547 555 :SILDTLED 1l8aA 833 :SRENLRHH Number of specific fragments extracted= 1 number of extra gaps= 1 total=107050 # 1y0uA.554.30 read from T0547.t06.many.frag # found chain 1y0uA in training set T0547 554 :QSILDTLED 1y0uA 29 :PVRRKILRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=107051 # 1ta8A.554.237 read from T0547.t06.many.frag # found chain 1ta8A in training set T0547 554 :QSILDTLED 1ta8A 238 :KTQFEALEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107052 # 1rylA.554.90 read from T0547.t06.many.frag # found chain 1rylA in training set T0547 554 :QSILDTLED 1rylA 91 :QELAATIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107053 # 2a8eA.554.107 read from T0547.t06.many.frag # found chain 2a8eA in template set T0547 554 :QSILDTLED 2a8eA 108 :PIKEEYGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107054 # 1d0cA.554.337 read from T0547.t06.many.frag # found chain 1d0cA in training set T0547 554 :QSILDTLED 1d0cA 376 :NILEDVAVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=107055 # 1k6kA.554.117 read from T0547.t06.many.frag # found chain 1k6kA in training set T0547 554 :QSILDTLED 1k6kA 118 :SQAAYLLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107056 # 1r0pA.554.261 read from T0547.t06.many.frag # found chain 1r0pA in training set T0547 554 :QSILDTLED 1r0pA 1310 :DPLYEVMLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107057 # 1m4zA.554.189 read from T0547.t06.many.frag # found chain 1m4zA in template set T0547 554 :QSILDTLED 1m4zA 187 :INIEDVKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=107058 # 1l3lA.554.188 read from T0547.t06.many.frag # found chain 1l3lA in training set T0547 554 :QSILDTLED 1l3lA 189 :KTMEEIADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107059 # 1p99A.554.249 read from T0547.t06.many.frag # found chain 1p99A in template set T0547 554 :QSILDTLED 1p99A 250 :KTYAKIVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107060 # 2bvcA.554.428 read from T0547.t06.many.frag # found chain 2bvcA in template set T0547 554 :QSILDTLED 2bvcA 421 :TQLSDVIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107061 # 1w2xA.554.690 read from T0547.t06.many.frag # found chain 1w2xA in template set T0547 554 :QSILDTLED 1w2xA 2166 :EDDRQVATW Number of specific fragments extracted= 1 number of extra gaps= 0 total=107062 # 2b61A.554.301 read from T0547.t06.many.frag # found chain 2b61A in training set T0547 554 :QSILDTLED 2b61A 283 :ENVKEALSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107063 # 2aplA.554.105 read from T0547.t06.many.frag # found chain 2aplA in template set T0547 554 :QSILDTLED 2aplA 106 :KAIQSVFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107064 # 1jihA.554.325 read from T0547.t06.many.frag # found chain 1jihA in template set Warning: unaligning (T0547)Q554 (1jihA)N326 because L (left) conformation "forbidden" or filtered. T0547 555 :SILDTLED 1jihA 327 :SIKHIRET Number of specific fragments extracted= 1 number of extra gaps= 1 total=107065 # 1dmlA.555.272 read from T0547.t06.many.frag # found chain 1dmlA in template set T0547 555 :SILDTLEDL 1dmlA 273 :SMRAVLRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107066 # 1d8hA.555.262 read from T0547.t06.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)S555 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)A501 Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 558 :DTLEDL 1d8hA 504 :NAFDNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=107067 # 1xewX.555.124 read from T0547.t06.many.frag # found chain 1xewX in template set T0547 555 :SILDTLEDL 1xewX 125 :EILDILTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107068 # 1us5A.555.259 read from T0547.t06.many.frag # found chain 1us5A in training set T0547 555 :SILDTLEDL 1us5A 260 :TVYKFMKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107069 # 1y1pA.555.312 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 555 :SILDTLEDL 1y1pA 314 :PSLEILKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107070 # 1sw5B.555.228 read from T0547.t06.many.frag # found chain 1sw5B in template set T0547 555 :SILDTLEDL 1sw5B 229 :KLISVLKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107071 # 1k6kA.555.38 read from T0547.t06.many.frag # found chain 1k6kA in training set T0547 555 :SILDTLEDL 1k6kA 39 :SAREALEAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=107072 # 2bnxA.555.217 read from T0547.t06.many.frag # found chain 2bnxA in template set T0547 555 :SILDTLEDL 2bnxA 348 :DMKVQLCVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107073 # 2a2cA.555.286 read from T0547.t06.many.frag # found chain 2a2cA in training set T0547 555 :SILDTLEDL 2a2cA 267 :RLEEVQAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107074 # 1ta8A.555.238 read from T0547.t06.many.frag # found chain 1ta8A in training set T0547 555 :SILDTLEDL 1ta8A 239 :TQFEALEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107075 # 1i3jA.555.84 read from T0547.t06.many.frag # found chain 1i3jA in template set T0547 555 :SILDTLEDL 1i3jA 214 :CAADAARHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107076 # 1qgiA.555.184 read from T0547.t06.many.frag # found chain 1qgiA in training set T0547 555 :SILDTLEDL 1qgiA 185 :TLQGLLARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107077 # 1k6kA.555.118 read from T0547.t06.many.frag # found chain 1k6kA in training set T0547 555 :SILDTLEDL 1k6kA 119 :QAAYLLRKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=107078 # 1y0uA.555.31 read from T0547.t06.many.frag # found chain 1y0uA in training set T0547 555 :SILDTLEDL 1y0uA 30 :VRRKILRML Number of specific fragments extracted= 1 number of extra gaps= 0 total=107079 # 2ab5A.555.222 read from T0547.t06.many.frag # found chain 2ab5A in template set T0547 555 :SILDTLEDL 2ab5A 471 :DIKNVVMFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107080 # 1l8aA.555.832 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 555 :SILDTLEDL 1l8aA 833 :SRENLRHHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107081 # 1rylA.555.91 read from T0547.t06.many.frag # found chain 1rylA in training set T0547 555 :SILDTLEDL 1rylA 92 :ELAATIDRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107082 # 2auwA.555.93 read from T0547.t06.many.frag # found chain 2auwA in template set T0547 555 :SILDTLEDL 2auwA 92 :MFGDWMHRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107083 # 1k4iA.555.197 read from T0547.t06.many.frag # found chain 1k4iA in training set T0547 555 :SILDTLEDL 1k4iA 198 :ECVAFARRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=107084 # 2b61A.555.302 read from T0547.t06.many.frag # found chain 2b61A in training set Warning: unaligning (T0547)S555 (2b61A)N284 because Y (epsilon') conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 2b61A 285 :VKEALSRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=107085 # 1k3rA.555.172 read from T0547.t06.many.frag # found chain 1k3rA in template set T0547 555 :SILDTLEDL 1k3rA 173 :NLAESLKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107086 # 1io1A.555.353 read from T0547.t06.many.frag # found chain 1io1A in template set Warning: unaligning (T0547)S555 (1io1A)N406 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1io1A 407 :PLQKIDAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=107087 # 1r0pA.555.262 read from T0547.t06.many.frag # found chain 1r0pA in training set T0547 555 :SILDTLEDL 1r0pA 1311 :PLYEVMLKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=107088 # 2a6aA.555.153 read from T0547.t06.many.frag # found chain 2a6aA in template set T0547 555 :SILDTLEDL 2a6aA 142 :ELEEITKEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107089 # 1x8qA.555.147 read from T0547.t06.many.frag # found chain 1x8qA in training set T0547 555 :SILDTLEDL 1x8qA 148 :KVKSAVSAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107090 # 1r9lA.555.249 read from T0547.t06.many.frag # found chain 1r9lA in training set T0547 555 :SILDTLEDL 1r9lA 250 :AAAKLFAIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=107091 # 1c3cA.555.324 read from T0547.t06.many.frag # found chain 1c3cA in training set T0547 555 :SILDTLEDL 1c3cA 326 :TATNVVRNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=107092 # 2aplA.555.106 read from T0547.t06.many.frag # found chain 2aplA in template set T0547 555 :SILDTLEDL 2aplA 107 :AIQSVFAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=107093 # 2bvcA.555.429 read from T0547.t06.many.frag # found chain 2bvcA in template set Warning: unaligning (T0547)S555 (2bvcA)Q422 because Y (epsilon') conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 2bvcA 423 :LSDVIDRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=107094 # 1m4zA.555.190 read from T0547.t06.many.frag # found chain 1m4zA in template set T0547 555 :SILDTLEDL 1m4zA 188 :NIEDVKAYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107095 # 1dmlA.556.273 read from T0547.t06.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)D564 (1dmlA)Q282 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1dmlA 274 :MRAVLRRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=107096 # 1d8hA.556.263 read from T0547.t06.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1d8hA)L503 Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 558 :DTLEDLD 1d8hA 504 :NAFDNIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=107097 # 1xewX.556.125 read from T0547.t06.many.frag # found chain 1xewX in template set Warning: unaligning (T0547)D564 (1xewX)M134 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1xewX 126 :ILDILTAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=107098 # 1us5A.556.260 read from T0547.t06.many.frag # found chain 1us5A in training set T0547 556 :ILDTLEDLD 1us5A 261 :VYKFMKAVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107099 # 1y1pA.556.313 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)D564 (1y1pA)G323 because T (delta_L) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1y1pA 315 :SLEILKSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=107100 # 2bnxA.556.218 read from T0547.t06.many.frag # found chain 2bnxA in template set T0547 556 :ILDTLEDLD 2bnxA 349 :MKVQLCVFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107101 # 1sw5B.556.229 read from T0547.t06.many.frag # found chain 1sw5B in template set Warning: unaligning (T0547)D564 (1sw5B)E238 because P (beta_P) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1sw5B 230 :LISVLKLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=107102 # 1k6kA.556.39 read from T0547.t06.many.frag # found chain 1k6kA in training set T0547 556 :ILDTLEDLD 1k6kA 40 :AREALEACS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107103 # 2a2cA.556.287 read from T0547.t06.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)D564 (2a2cA)G276 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 2a2cA 268 :LEEVQAKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=107104 # 1i3jA.556.85 read from T0547.t06.many.frag # found chain 1i3jA in template set T0547 556 :ILDTLEDLD 1i3jA 215 :AADAARHFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107105 # 1l8aA.556.833 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 556 :ILDTLEDLD 1l8aA 834 :RENLRHHFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107106 # 1k3rA.556.173 read from T0547.t06.many.frag # found chain 1k3rA in template set Warning: unaligning (T0547)D564 (1k3rA)G182 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1k3rA 174 :LAESLKTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=107107 # 1r9lA.556.250 read from T0547.t06.many.frag # found chain 1r9lA in training set T0547 556 :ILDTLEDLD 1r9lA 251 :AAKLFAIMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107108 # 1k6kA.556.119 read from T0547.t06.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)E128 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1k6kA 120 :AAYLLRKH Number of specific fragments extracted= 1 number of extra gaps= 1 total=107109 # 1x8qA.556.148 read from T0547.t06.many.frag # found chain 1x8qA in training set Warning: unaligning (T0547)D564 (1x8qA)T157 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1x8qA 149 :VKSAVSAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=107110 # 1whzA.556.52 read from T0547.t06.many.frag # found chain 1whzA in training set Warning: unaligning (T0547)D564 (1whzA)G61 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1whzA 53 :FKRILRDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=107111 # 1qgiA.556.185 read from T0547.t06.many.frag # found chain 1qgiA in training set Warning: unaligning (T0547)D564 (1qgiA)G194 because S (epsilon) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1qgiA 186 :LQGLLARS Number of specific fragments extracted= 1 number of extra gaps= 1 total=107112 # 1r9jA.556.632 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)D564 (1r9jA)G639 because T (delta_L) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1r9jA 631 :AGVLYKKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=107113 # 2auwA.556.94 read from T0547.t06.many.frag # found chain 2auwA in template set T0547 556 :ILDTLEDLD 2auwA 93 :FGDWMHRNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107114 # 1oksA.556.6 read from T0547.t06.many.frag # found chain 1oksA in training set T0547 556 :ILDTLEDLD 1oksA 7 :IRSIIKSSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107115 # 1c3cA.556.325 read from T0547.t06.many.frag # found chain 1c3cA in training set T0547 556 :ILDTLEDLD 1c3cA 327 :ATNVVRNMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107116 # 1t6cA.556.243 read from T0547.t06.many.frag # found chain 1t6cA in training set T0547 556 :ILDTLEDLD 1t6cA 241 :IKKWFDTFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107117 # 1k4iA.556.198 read from T0547.t06.many.frag # found chain 1k4iA in training set Warning: unaligning (T0547)D564 (1k4iA)G207 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1k4iA 199 :CVAFARRW Number of specific fragments extracted= 1 number of extra gaps= 1 total=107118 # 1tr8A.556.68 read from T0547.t06.many.frag # found chain 1tr8A in template set T0547 556 :ILDTLEDLD 1tr8A 84 :IELVMNQTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107119 # 1y0uA.556.32 read from T0547.t06.many.frag # found chain 1y0uA in training set T0547 556 :ILDTLEDLD 1y0uA 31 :RRKILRMLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107120 # 1oaiA.556.24 read from T0547.t06.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. T0547 556 :ILDTLEDL 1oaiA 585 :SQKCLQDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=107121 # 1rylA.556.92 read from T0547.t06.many.frag # found chain 1rylA in training set T0547 556 :ILDTLEDLD 1rylA 93 :LAATIDRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107122 # 2aplA.556.107 read from T0547.t06.many.frag # found chain 2aplA in template set T0547 556 :ILDTLEDLD 2aplA 108 :IQSVFAKYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107123 # 2b61A.556.303 read from T0547.t06.many.frag # found chain 2b61A in training set T0547 556 :ILDTLEDLD 2b61A 285 :VKEALSRIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107124 # 1guxA.556.142 read from T0547.t06.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)I556 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1guxA)F514 Warning: unaligning (T0547)L557 because of BadResidue code BAD_PEPTIDE at template residue (1guxA)P515 Warning: unaligning (T0547)D564 (1guxA)N522 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1guxA 516 :WILNVL Number of specific fragments extracted= 1 number of extra gaps= 2 total=107125 # 1dmlA.557.274 read from T0547.t06.many.frag # found chain 1dmlA in template set T0547 557 :LDTLEDLDY 1dmlA 275 :RAVLRRLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107126 # 1d8hA.557.264 read from T0547.t06.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)L557 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1d8hA)L503 T0547 558 :DTLEDLDY 1d8hA 504 :NAFDNITN Number of specific fragments extracted= 1 number of extra gaps= 1 total=107127 # 1us5A.557.261 read from T0547.t06.many.frag # found chain 1us5A in training set T0547 557 :LDTLEDLDY 1us5A 262 :YKFMKAVFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107128 # 1r9lA.557.251 read from T0547.t06.many.frag # found chain 1r9lA in training set T0547 557 :LDTLEDLDY 1r9lA 252 :AKLFAIMQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107129 # 1xewX.557.126 read from T0547.t06.many.frag # found chain 1xewX in template set Warning: unaligning (T0547)D564 (1xewX)M134 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1xewX 127 :LDILTAA T0547 565 :Y 1xewX 135 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=107131 # 1k6kA.557.40 read from T0547.t06.many.frag # found chain 1k6kA in training set T0547 557 :LDTLEDLDY 1k6kA 41 :REALEACSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107132 # 1i3jA.557.86 read from T0547.t06.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)D564 (1i3jA)K223 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1i3jA 216 :ADAARHF T0547 565 :Y 1i3jA 224 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=107134 # 1y1pA.557.314 read from T0547.t06.many.frag # found chain 1y1pA in training set Warning: unaligning (T0547)D564 (1y1pA)G323 because T (delta_L) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1y1pA 316 :LEILKSL T0547 565 :Y 1y1pA 324 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=107136 # 2bnxA.557.219 read from T0547.t06.many.frag # found chain 2bnxA in template set T0547 557 :LDTLEDLDY 2bnxA 350 :KVQLCVFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107137 # 1k6kA.557.120 read from T0547.t06.many.frag # found chain 1k6kA in training set T0547 557 :LDTLEDLDY 1k6kA 121 :AYLLRKHEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107138 # 2a2cA.557.288 read from T0547.t06.many.frag # found chain 2a2cA in training set T0547 557 :LDTLEDLDY 2a2cA 269 :EEVQAKLGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107139 # 1r9jA.557.633 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 557 :LDTLEDLDY 1r9jA 632 :GVLYKKFGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107140 # 1l8aA.557.834 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)D564 (1l8aA)E842 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1l8aA 835 :ENLRHHF T0547 565 :Y 1l8aA 843 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=107142 # 1whzA.557.53 read from T0547.t06.many.frag # found chain 1whzA in training set Warning: unaligning (T0547)D564 (1whzA)G61 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1whzA 54 :KRILRDA T0547 565 :Y 1whzA 62 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=107144 # 1k3rA.557.174 read from T0547.t06.many.frag # found chain 1k3rA in template set Warning: unaligning (T0547)D564 (1k3rA)G182 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1k3rA 175 :AESLKTV T0547 565 :Y 1k3rA 183 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=107146 # 2auwA.557.95 read from T0547.t06.many.frag # found chain 2auwA in template set Warning: unaligning (T0547)D564 (2auwA)N101 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 2auwA 94 :GDWMHRN T0547 565 :Y 2auwA 102 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=107148 # 1tr8A.557.69 read from T0547.t06.many.frag # found chain 1tr8A in template set Warning: unaligning (T0547)D564 (1tr8A)G92 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1tr8A 85 :ELVMNQT T0547 565 :Y 1tr8A 93 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=107150 # 1oaiA.557.25 read from T0547.t06.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1oaiA 586 :QKCLQDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=107151 # 1c3cA.557.326 read from T0547.t06.many.frag # found chain 1c3cA in training set T0547 557 :LDTLEDLDY 1c3cA 328 :TNVVRNMKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107152 # 1oksA.557.7 read from T0547.t06.many.frag # found chain 1oksA in training set T0547 557 :LDTLEDLDY 1oksA 8 :RSIIKSSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107153 # 1x8qA.557.149 read from T0547.t06.many.frag # found chain 1x8qA in training set Warning: unaligning (T0547)D564 (1x8qA)T157 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1x8qA 150 :KSAVSAA T0547 565 :Y 1x8qA 158 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=107155 # 2b8nA.557.380 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)D564 (2b8nA)G376 because T (delta_L) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 2b8nA 369 :AKTLKAM T0547 565 :Y 2b8nA 377 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=107157 # 1sw5B.557.230 read from T0547.t06.many.frag # found chain 1sw5B in template set Warning: unaligning (T0547)Y565 (1sw5B)D239 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDLD 1sw5B 231 :ISVLKLLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=107158 # 1qgiA.557.186 read from T0547.t06.many.frag # found chain 1qgiA in training set T0547 557 :LDTLEDLDY 1qgiA 187 :QGLLARSGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107159 # 1us0A.557.234 read from T0547.t06.many.frag # found chain 1us0A in training set Warning: unaligning (T0547)D564 (1us0A)N241 because L (left) conformation "forbidden" or filtered. T0547 557 :LDTLEDL 1us0A 234 :KAIAAKH T0547 565 :Y 1us0A 242 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=107161 # 1zupA.557.291 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 557 :LDTLEDLDY 1zupA 280 :EENLSYYLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107162 # 2a8eA.557.110 read from T0547.t06.many.frag # found chain 2a8eA in template set T0547 557 :LDTLEDLDY 2a8eA 111 :EEYGKLLEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107163 # 1z53A.557.244 read from T0547.t06.many.frag # found chain 1z53A in template set T0547 557 :LDTLEDLDY 1z53A 245 :LSIVKEYAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107164 # 1io1A.557.355 read from T0547.t06.many.frag # found chain 1io1A in template set T0547 557 :LDTLEDLDY 1io1A 408 :LQKIDAALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107165 # 1pyaB.557.125 read from T0547.t06.many.frag # found chain 1pyaB in template set T0547 557 :LDTLEDLDY 1pyaB 208 :DELLEYLEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107166 # 1r9lA.558.252 read from T0547.t06.many.frag # found chain 1r9lA in training set T0547 558 :DTLEDLDYD 1r9lA 253 :KLFAIMQLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=107167 # 1us5A.558.262 read from T0547.t06.many.frag # found chain 1us5A in training set T0547 558 :DTLEDLDYD 1us5A 263 :KFMKAVFGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107168 # 1i3jA.558.87 read from T0547.t06.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)D564 (1i3jA)K223 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1i3jA 217 :DAARHF T0547 565 :YD 1i3jA 224 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=107170 # 1d8hA.558.265 read from T0547.t06.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)D566 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)S513 T0547 558 :DTLEDLDY 1d8hA 504 :NAFDNITN Number of specific fragments extracted= 1 number of extra gaps= 1 total=107171 # 2a2cA.558.289 read from T0547.t06.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)D564 (2a2cA)G276 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 2a2cA 270 :EVQAKL T0547 565 :YD 2a2cA 277 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=107173 # 1dmlA.558.275 read from T0547.t06.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)D564 (1dmlA)Q282 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1dmlA 276 :AVLRRL T0547 565 :YD 1dmlA 283 :VG Number of specific fragments extracted= 2 number of extra gaps= 1 total=107175 # 1r9jA.558.634 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)D564 (1r9jA)G639 because T (delta_L) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1r9jA 633 :VLYKKF T0547 565 :YD 1r9jA 640 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=107177 # 1whzA.558.54 read from T0547.t06.many.frag # found chain 1whzA in training set Warning: unaligning (T0547)D564 (1whzA)G61 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1whzA 55 :RILRDA T0547 565 :YD 1whzA 62 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=107179 # 1k6kA.558.121 read from T0547.t06.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)E128 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1k6kA 122 :YLLRKH T0547 565 :YD 1k6kA 129 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=107181 # 2bnxA.558.220 read from T0547.t06.many.frag # found chain 2bnxA in template set T0547 558 :DTLEDLDYD 2bnxA 351 :VQLCVFDEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107182 # 1k6kA.558.41 read from T0547.t06.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)S48 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1k6kA 42 :EALEAC T0547 565 :YD 1k6kA 49 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=107184 # 2b8nA.558.381 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 558 :DTLEDLDYD 2b8nA 370 :KTLKAMGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=107185 # 1l8aA.558.835 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)D564 (1l8aA)E842 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1l8aA 836 :NLRHHF T0547 565 :YD 1l8aA 843 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=107187 # 1oaiA.558.26 read from T0547.t06.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1oaiA 587 :KCLQDN T0547 566 :D 1oaiA 595 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=107189 # 1y1pA.558.315 read from T0547.t06.many.frag # found chain 1y1pA in training set T0547 558 :DTLEDLDYD 1y1pA 317 :EILKSLGRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=107190 # 1p4xA.558.178 read from T0547.t06.many.frag # found chain 1p4xA in template set Warning: unaligning (T0547)D566 (1p4xA)K187 because P (beta_P) conformation "forbidden" or filtered. T0547 558 :DTLEDLDY 1p4xA 179 :DLIETIHH Number of specific fragments extracted= 1 number of extra gaps= 1 total=107191 # 1k3rA.558.175 read from T0547.t06.many.frag # found chain 1k3rA in template set Warning: unaligning (T0547)D564 (1k3rA)G182 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1k3rA 176 :ESLKTV T0547 565 :YD 1k3rA 183 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=107193 # 1u3eM.558.139 read from T0547.t06.many.frag # found chain 1u3eM in template set T0547 558 :DTLEDLDYD 1u3eM 140 :CACEELGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107194 # 1c3cA.558.327 read from T0547.t06.many.frag # found chain 1c3cA in training set T0547 558 :DTLEDLDYD 1c3cA 329 :NVVRNMKVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107195 # 2ao9A.558.52 read from T0547.t06.many.frag # found chain 2ao9A in template set Warning: unaligning (T0547)D564 (2ao9A)G59 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 2ao9A 53 :EMANEL T0547 565 :YD 2ao9A 60 :IN Number of specific fragments extracted= 2 number of extra gaps= 1 total=107197 # 1zc6A.558.186 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)Y565 (1zc6A)G194 because T (delta_L) conformation "forbidden" or filtered. T0547 558 :DTLEDLD 1zc6A 187 :AVLDFVG T0547 566 :D 1zc6A 195 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=107199 # 1tr8A.558.70 read from T0547.t06.many.frag # found chain 1tr8A in template set Warning: unaligning (T0547)D564 (1tr8A)G92 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1tr8A 86 :LVMNQT T0547 565 :YD 1tr8A 93 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=107201 # 2auwA.558.96 read from T0547.t06.many.frag # found chain 2auwA in template set T0547 558 :DTLEDLDYD 2auwA 95 :DWMHRNNLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107202 # 1xewX.558.127 read from T0547.t06.many.frag # found chain 1xewX in template set Warning: unaligning (T0547)D564 (1xewX)M134 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1xewX 128 :DILTAA T0547 565 :YD 1xewX 135 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=107204 # 1oksA.558.8 read from T0547.t06.many.frag # found chain 1oksA in training set T0547 558 :DTLEDLDYD 1oksA 9 :SIIKSSRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107205 # 1guxA.558.144 read from T0547.t06.many.frag # found chain 1guxA in template set T0547 558 :DTLEDLDYD 1guxA 516 :WILNVLNLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107206 # 1fs7A.558.427 read from T0547.t06.many.frag # found chain 1fs7A in training set T0547 558 :DTLEDLDYD 1fs7A 450 :KAQKLAKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107207 # 1x8qA.558.150 read from T0547.t06.many.frag # found chain 1x8qA in training set Warning: unaligning (T0547)D564 (1x8qA)T157 because L (left) conformation "forbidden" or filtered. T0547 558 :DTLEDL 1x8qA 151 :SAVSAA T0547 565 :YD 1x8qA 158 :LE Number of specific fragments extracted= 2 number of extra gaps= 1 total=107209 # 2b5aA.558.56 read from T0547.t06.many.frag # found chain 2b5aA in training set T0547 558 :DTLEDLDYD 2b5aA 57 :KICAALDIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=107210 # 1pyaB.558.126 read from T0547.t06.many.frag # found chain 1pyaB in template set T0547 558 :DTLEDLDYD 1pyaB 209 :ELLEYLEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107211 # 1r9lA.559.253 read from T0547.t06.many.frag # found chain 1r9lA in training set T0547 559 :TLEDLDYDI 1r9lA 254 :LFAIMQLPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107212 # 2a2cA.559.290 read from T0547.t06.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)D564 (2a2cA)G276 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 2a2cA 271 :VQAKL T0547 565 :YDI 2a2cA 277 :ISL Number of specific fragments extracted= 2 number of extra gaps= 1 total=107214 # 1i3jA.559.88 read from T0547.t06.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)D564 (1i3jA)K223 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1i3jA 218 :AARHF T0547 565 :YDI 1i3jA 224 :ISS Number of specific fragments extracted= 2 number of extra gaps= 1 total=107216 # 1r9jA.559.635 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)D564 (1r9jA)G639 because T (delta_L) conformation "forbidden" or filtered. T0547 559 :TLEDL 1r9jA 634 :LYKKF T0547 565 :YDI 1r9jA 640 :ITV Number of specific fragments extracted= 2 number of extra gaps= 1 total=107218 # 1us5A.559.263 read from T0547.t06.many.frag # found chain 1us5A in training set T0547 559 :TLEDLDYDI 1us5A 264 :FMKAVFGNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107219 # 1fs7A.559.428 read from T0547.t06.many.frag # found chain 1fs7A in training set T0547 559 :TLEDLDYDI 1fs7A 451 :AQKLAKVDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=107220 # 1k6kA.559.122 read from T0547.t06.many.frag # found chain 1k6kA in training set T0547 559 :TLEDLDYDI 1k6kA 123 :LLRKHEVSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107221 # 2b5aA.559.57 read from T0547.t06.many.frag # found chain 2b5aA in training set Warning: unaligning (T0547)D564 (2b5aA)D63 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 2b5aA 58 :ICAAL T0547 565 :YDI 2b5aA 64 :IPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=107223 # 2ao9A.559.53 read from T0547.t06.many.frag # found chain 2ao9A in template set Warning: unaligning (T0547)D564 (2ao9A)G59 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 2ao9A 54 :MANEL T0547 565 :YDI 2ao9A 60 :INR Number of specific fragments extracted= 2 number of extra gaps= 1 total=107225 # 1oaiA.559.27 read from T0547.t06.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1oaiA 588 :CLQDN T0547 566 :DI 1oaiA 595 :DY Number of specific fragments extracted= 2 number of extra gaps= 1 total=107227 # 1u3eM.559.140 read from T0547.t06.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1u3eM 141 :ACEEL T0547 565 :YDI 1u3eM 147 :LTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=107229 # 2b8nA.559.382 read from T0547.t06.many.frag # found chain 2b8nA in template set T0547 559 :TLEDLDYDI 2b8nA 371 :TLKAMGEDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=107230 # 1k6kA.559.42 read from T0547.t06.many.frag # found chain 1k6kA in training set T0547 559 :TLEDLDYDI 1k6kA 43 :ALEACSVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107231 # 2auwA.559.97 read from T0547.t06.many.frag # found chain 2auwA in template set Warning: unaligning (T0547)D564 (2auwA)N101 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 2auwA 96 :WMHRN T0547 565 :YDI 2auwA 102 :LSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=107233 # 1whzA.559.55 read from T0547.t06.many.frag # found chain 1whzA in training set Warning: unaligning (T0547)D564 (1whzA)G61 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1whzA 56 :ILRDA T0547 565 :YDI 1whzA 62 :LTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=107235 # 1p4xA.559.179 read from T0547.t06.many.frag # found chain 1p4xA in template set T0547 559 :TLEDLDYDI 1p4xA 180 :LIETIHHKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=107236 # 1l8aA.559.836 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 559 :TLEDLDYDI 1l8aA 837 :LRHHFEVDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107237 # 1c3cA.559.328 read from T0547.t06.many.frag # found chain 1c3cA in training set T0547 559 :TLEDLDYDI 1c3cA 330 :VVRNMKVNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107238 # 1d8hA.559.266 read from T0547.t06.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)D566 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)S513 Warning: unaligning (T0547)I567 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)S513 T0547 559 :TLEDLDY 1d8hA 505 :AFDNITN Number of specific fragments extracted= 1 number of extra gaps= 1 total=107239 # 2bnxA.559.221 read from T0547.t06.many.frag # found chain 2bnxA in template set T0547 559 :TLEDLDYDI 2bnxA 352 :QLCVFDEQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107240 # 1zc6A.559.187 read from T0547.t06.many.frag # found chain 1zc6A in template set T0547 559 :TLEDLDYDI 1zc6A 188 :VLDFVGGDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=107241 # 1u8bA.559.98 read from T0547.t06.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 559 :TLEDL 1u8bA 105 :LADQV T0547 567 :I 1u8bA 113 :P Number of specific fragments extracted= 2 number of extra gaps= 0 total=107243 # 1dmlA.559.276 read from T0547.t06.many.frag # found chain 1dmlA in template set Warning: unaligning (T0547)D564 (1dmlA)Q282 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1dmlA 277 :VLRRL T0547 565 :YDI 1dmlA 283 :VGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=107245 # 1guxA.559.145 read from T0547.t06.many.frag # found chain 1guxA in template set T0547 559 :TLEDLDYDI 1guxA 517 :ILNVLNLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107246 # 1tr8A.559.71 read from T0547.t06.many.frag # found chain 1tr8A in template set Warning: unaligning (T0547)D564 (1tr8A)G92 because L (left) conformation "forbidden" or filtered. T0547 559 :TLEDL 1tr8A 87 :VMNQT T0547 565 :YDI 1tr8A 93 :ASR Number of specific fragments extracted= 2 number of extra gaps= 1 total=107248 # 1msk.559.306 read from T0547.t06.many.frag # found chain 1msk in template set T0547 559 :TLEDLDYDI 1msk 1203 :YARRKGMSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107249 # 1oksA.559.9 read from T0547.t06.many.frag # found chain 1oksA in training set Warning: unaligning (T0547)D566 (1oksA)E17 because P (beta_P) conformation "forbidden" or filtered. T0547 559 :TLEDLDY 1oksA 10 :IIKSSRL T0547 567 :I 1oksA 18 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=107251 # 1njrA.559.249 read from T0547.t06.many.frag # found chain 1njrA in template set Warning: unaligning (T0547)D564 (1njrA)G255 because T (delta_L) conformation "forbidden" or filtered. T0547 559 :TLEDL 1njrA 250 :ECQKL T0547 565 :YDI 1njrA 256 :IDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=107253 # 1zupA.559.293 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 559 :TLEDLDYDI 1zupA 282 :NLSYYLTDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107254 # 2a6cA.559.25 read from T0547.t06.many.frag # found chain 2a6cA in template set Warning: unaligning (T0547)D564 (2a6cA)G19 because T (delta_L) conformation "forbidden" or filtered. T0547 559 :TLEDL 2a6cA 14 :HLRNS T0547 565 :YDI 2a6cA 20 :LTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=107256 # 2a2cA.560.291 read from T0547.t06.many.frag # found chain 2a2cA in training set T0547 560 :LEDLDYDIH 2a2cA 272 :QAKLGISLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107257 # 1r9lA.560.254 read from T0547.t06.many.frag # found chain 1r9lA in training set Warning: unaligning (T0547)D564 (1r9lA)Q259 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1r9lA)P261 because P (beta_P) conformation "forbidden" or filtered. T0547 560 :LEDL 1r9lA 255 :FAIM T0547 565 :Y 1r9lA 260 :L T0547 567 :IH 1r9lA 262 :VA Number of specific fragments extracted= 3 number of extra gaps= 2 total=107260 # 1i3jA.560.89 read from T0547.t06.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)D564 (1i3jA)K223 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1i3jA)S225 because P (beta_P) conformation "forbidden" or filtered. T0547 560 :LEDL 1i3jA 219 :ARHF T0547 565 :Y 1i3jA 224 :I T0547 567 :IH 1i3jA 226 :SG Number of specific fragments extracted= 3 number of extra gaps= 2 total=107263 # 1fs7A.560.429 read from T0547.t06.many.frag # found chain 1fs7A in training set T0547 560 :LEDLDYDIH 1fs7A 452 :QKLAKVDME Number of specific fragments extracted= 1 number of extra gaps= 0 total=107264 # 2b8nA.560.383 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)D566 (2b8nA)D378 because E (beta_S) conformation "forbidden" or filtered. T0547 560 :LEDLDY 2b8nA 372 :LKAMGE T0547 567 :IH 2b8nA 379 :PY Number of specific fragments extracted= 2 number of extra gaps= 1 total=107266 # 1us5A.560.264 read from T0547.t06.many.frag # found chain 1us5A in training set T0547 560 :LEDLDYDIH 1us5A 265 :MKAVFGNLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107267 # 1oaiA.560.28 read from T0547.t06.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1oaiA 589 :LQDN T0547 565 :YDIH 1oaiA 594 :WDYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=107269 # 2b5aA.560.58 read from T0547.t06.many.frag # found chain 2b5aA in training set T0547 560 :LEDLDYDIH 2b5aA 59 :CAALDIPAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107270 # 1zc6A.560.188 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)D564 (1zc6A)G193 because T (delta_L) conformation "forbidden" or filtered. T0547 560 :LEDL 1zc6A 189 :LDFV T0547 565 :YDIH 1zc6A 194 :GDWQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=107272 # 1r9jA.560.636 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 560 :LEDLDYDIH 1r9jA 635 :YKKFGITVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107273 # 2ao9A.560.54 read from T0547.t06.many.frag # found chain 2ao9A in template set Warning: unaligning (T0547)D564 (2ao9A)G59 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 2ao9A 55 :ANEL T0547 565 :YDIH 2ao9A 60 :INRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=107275 # 2auwA.560.98 read from T0547.t06.many.frag # found chain 2auwA in template set T0547 560 :LEDLDYDIH 2auwA 97 :MHRNNLSLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107276 # 1u3eM.560.141 read from T0547.t06.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1u3eM 142 :CEEL T0547 565 :YDIH 1u3eM 147 :LTRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=107278 # 1k6kA.560.123 read from T0547.t06.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)E128 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1k6kA 124 :LRKH T0547 565 :YDIH 1k6kA 129 :VSRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=107280 # 1whzA.560.56 read from T0547.t06.many.frag # found chain 1whzA in training set T0547 560 :LEDLDYDIH 1whzA 57 :LRDAGLTEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107281 # 1u8bA.560.99 read from T0547.t06.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 560 :LEDL 1u8bA 106 :ADQV T0547 567 :IH 1u8bA 113 :PF Number of specific fragments extracted= 2 number of extra gaps= 0 total=107283 # 1p4xA.560.180 read from T0547.t06.many.frag # found chain 1p4xA in template set T0547 560 :LEDLDYDIH 1p4xA 181 :IETIHHKYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=107284 # 1k6kA.560.43 read from T0547.t06.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)S48 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1k6kA 44 :LEAC T0547 565 :YDIH 1k6kA 49 :VDLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=107286 # 2bnxA.560.222 read from T0547.t06.many.frag # found chain 2bnxA in template set T0547 560 :LEDLDYDIH 2bnxA 353 :LCVFDEQGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107287 # 1ts9A.560.75 read from T0547.t06.many.frag # found chain 1ts9A in training set T0547 560 :LEDLDYDIH 1ts9A 76 :GDLINFRPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107288 # 1msk.560.307 read from T0547.t06.many.frag # found chain 1msk in template set T0547 560 :LEDLDYDIH 1msk 1204 :ARRKGMSVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107289 # 2a6cA.560.26 read from T0547.t06.many.frag # found chain 2a6cA in template set T0547 560 :LEDLDYDIH 2a6cA 15 :LRNSGLTQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107290 # 1zupA.560.294 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 560 :LEDLDYDIH 1zupA 283 :LSYYLTDKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107291 # 1c3cA.560.329 read from T0547.t06.many.frag # found chain 1c3cA in training set Warning: unaligning (T0547)D564 (1c3cA)K335 because P (beta_P) conformation "forbidden" or filtered. T0547 560 :LEDL 1c3cA 331 :VRNM T0547 565 :YDIH 1c3cA 336 :VNEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=107293 # 1z53A.560.247 read from T0547.t06.many.frag # found chain 1z53A in template set T0547 560 :LEDLDYDIH 1z53A 248 :VKEYANDQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107294 # 2ccyA.560.96 read from T0547.t06.many.frag # found chain 2ccyA in training set T0547 560 :LEDLDYDIH 2ccyA 97 :AAAAKAGPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107295 # 1d8hA.560.267 read from T0547.t06.many.frag # found chain 1d8hA in template set Warning: unaligning (T0547)D566 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)S513 Warning: unaligning (T0547)I567 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)S513 T0547 560 :LEDLDY 1d8hA 506 :FDNITN T0547 568 :H 1d8hA 514 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=107297 # 1njrA.560.250 read from T0547.t06.many.frag # found chain 1njrA in template set Warning: unaligning (T0547)D564 (1njrA)G255 because T (delta_L) conformation "forbidden" or filtered. T0547 560 :LEDL 1njrA 251 :CQKL T0547 565 :YDIH 1njrA 256 :IDIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=107299 # 1tr8A.560.72 read from T0547.t06.many.frag # found chain 1tr8A in template set Warning: unaligning (T0547)D564 (1tr8A)G92 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1tr8A 88 :MNQT T0547 565 :YDIH 1tr8A 93 :ASRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=107301 # 1l8aA.560.837 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)D564 (1l8aA)E842 because L (left) conformation "forbidden" or filtered. T0547 560 :LEDL 1l8aA 838 :RHHF T0547 565 :YDIH 1l8aA 843 :VDAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=107303 # 1r9lA.561.255 read from T0547.t06.many.frag # found chain 1r9lA in training set T0547 561 :EDLDYDIHA 1r9lA 256 :AIMQLPVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107304 # 2b5aA.561.59 read from T0547.t06.many.frag # found chain 2b5aA in training set T0547 561 :EDLDYDIHA 2b5aA 60 :AALDIPAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=107305 # 2auwA.561.99 read from T0547.t06.many.frag # found chain 2auwA in template set Warning: unaligning (T0547)D564 (2auwA)N101 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 2auwA 98 :HRN T0547 565 :YDIHA 2auwA 102 :LSLTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=107307 # 1fs7A.561.430 read from T0547.t06.many.frag # found chain 1fs7A in training set Warning: unaligning (T0547)D564 (1fs7A)K456 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1fs7A 453 :KLA T0547 565 :YDIHA 1fs7A 457 :VDMEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=107309 # 1i3jA.561.90 read from T0547.t06.many.frag # found chain 1i3jA in template set Warning: unaligning (T0547)D564 (1i3jA)K223 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1i3jA 220 :RHF T0547 565 :YDIHA 1i3jA 224 :ISSGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=107311 # 1oaiA.561.29 read from T0547.t06.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. T0547 561 :EDLD 1oaiA 590 :QDNN T0547 566 :DIHA 1oaiA 595 :DYTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=107313 # 1k6kA.561.124 read from T0547.t06.many.frag # found chain 1k6kA in training set T0547 561 :EDLDYDIHA 1k6kA 125 :RKHEVSRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107314 # 2a2cA.561.292 read from T0547.t06.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)D564 (2a2cA)G276 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 2a2cA 273 :AKL T0547 565 :YDIHA 2a2cA 277 :ISLEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=107316 # 1u3eM.561.142 read from T0547.t06.many.frag # found chain 1u3eM in template set T0547 561 :EDLDYDIHA 1u3eM 143 :EELGLTRGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107317 # 1u8bA.561.100 read from T0547.t06.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 561 :EDL 1u8bA 107 :DQV T0547 567 :IHA 1u8bA 113 :PFH Number of specific fragments extracted= 2 number of extra gaps= 0 total=107319 # 1zc6A.561.189 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)D564 (1zc6A)G193 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1zc6A)G194 because T (delta_L) conformation "forbidden" or filtered. T0547 561 :EDL 1zc6A 190 :DFV T0547 566 :DIHA 1zc6A 195 :DWQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=107321 # 1r9jA.561.637 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 561 :EDLDYDIHA 1r9jA 636 :KKFGITVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107322 # 1whzA.561.57 read from T0547.t06.many.frag # found chain 1whzA in training set T0547 561 :EDLDYDIHA 1whzA 58 :RDAGLTEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107323 # 2b8nA.561.384 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)D564 (2b8nA)G376 because T (delta_L) conformation "forbidden" or filtered. T0547 561 :EDL 2b8nA 373 :KAM T0547 565 :YDIHA 2b8nA 377 :EDPYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=107325 # 2a6cA.561.27 read from T0547.t06.many.frag # found chain 2a6cA in template set Warning: unaligning (T0547)D564 (2a6cA)G19 because T (delta_L) conformation "forbidden" or filtered. T0547 561 :EDL 2a6cA 16 :RNS T0547 565 :YDIHA 2a6cA 20 :LTQFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=107327 # 1c3cA.561.330 read from T0547.t06.many.frag # found chain 1c3cA in training set T0547 561 :EDLDYDIHA 1c3cA 332 :RNMKVNEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=107328 # 1k6kA.561.44 read from T0547.t06.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)S48 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1k6kA 45 :EAC T0547 565 :YDIHA 1k6kA 49 :VDLVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=107330 # 1p4xA.561.181 read from T0547.t06.many.frag # found chain 1p4xA in template set T0547 561 :EDLDYDIHA 1p4xA 182 :ETIHHKYPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107331 # 2ao9A.561.55 read from T0547.t06.many.frag # found chain 2ao9A in template set Warning: unaligning (T0547)D564 (2ao9A)G59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (2ao9A)N61 because P (beta_P) conformation "forbidden" or filtered. T0547 561 :EDL 2ao9A 56 :NEL T0547 565 :Y 2ao9A 60 :I T0547 567 :IHA 2ao9A 62 :RTT Number of specific fragments extracted= 3 number of extra gaps= 2 total=107334 # 1ts9A.561.76 read from T0547.t06.many.frag # found chain 1ts9A in training set Warning: unaligning (T0547)Y565 (1ts9A)F81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1ts9A)R82 because P (beta_P) conformation "forbidden" or filtered. T0547 561 :EDLD 1ts9A 77 :DLIN T0547 567 :IHA 1ts9A 83 :PED Number of specific fragments extracted= 2 number of extra gaps= 1 total=107336 # 1msk.561.308 read from T0547.t06.many.frag # found chain 1msk in template set Warning: unaligning (T0547)D564 (1msk)G1208 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1msk 1205 :RRK T0547 565 :YDIHA 1msk 1209 :MSVTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=107338 # 1tjvA.561.352 read from T0547.t06.many.frag # found chain 1tjvA in template set Warning: unaligning (T0547)D564 (1tjvA)Q356 because E (beta_S) conformation "forbidden" or filtered. T0547 561 :EDL 1tjvA 353 :STL T0547 565 :YDIHA 1tjvA 357 :ISKEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=107340 # 1zupA.561.295 read from T0547.t06.many.frag # found chain 1zupA in template set T0547 561 :EDLDYDIHA 1zupA 284 :SYYLTDKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=107341 # 1z53A.561.248 read from T0547.t06.many.frag # found chain 1z53A in template set Warning: unaligning (T0547)Y565 (1z53A)N253 because G (3-10) conformation "forbidden" or filtered. T0547 561 :EDLD 1z53A 249 :KEYA T0547 566 :DIHA 1z53A 254 :DQDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=107343 # 1zbsA.561.172 read from T0547.t06.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)D564 (1zbsA)G176 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1zbsA 173 :QEY T0547 565 :YDIHA 1zbsA 177 :LTSAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=107345 # 1us5A.561.265 read from T0547.t06.many.frag # found chain 1us5A in training set T0547 561 :EDLDYDIHA 1us5A 266 :KAVFGNLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107346 # 2bnxA.561.223 read from T0547.t06.many.frag # found chain 2bnxA in template set T0547 561 :EDLDYDIHA 2bnxA 354 :CVFDEQGDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107347 # 1fc3A.561.55 read from T0547.t06.many.frag # found chain 1fc3A in template set Warning: unaligning (T0547)D564 (1fc3A)N198 because L (left) conformation "forbidden" or filtered. T0547 561 :EDL 1fc3A 195 :KKY T0547 565 :YDIHA 1fc3A 199 :TTASR Number of specific fragments extracted= 2 number of extra gaps= 1 total=107349 # 1n3lA.561.299 read from T0547.t06.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)L563 (1n3lA)E302 because L (left) conformation "forbidden" or filtered. T0547 561 :ED 1n3lA 300 :AA T0547 564 :DYDIHA 1n3lA 303 :VVHPGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=107351 # 1zkeA.561.25 read from T0547.t06.many.frag # found chain 1zkeA in training set T0547 561 :EDLDYDIHA 1zkeA 24 :KLANLSLGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107352 # 2auwA.562.100 read from T0547.t06.many.frag # found chain 2auwA in template set Warning: unaligning (T0547)D564 (2auwA)N101 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 2auwA 99 :RN T0547 565 :YDIHAI 2auwA 102 :LSLTTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=107354 # 1r9lA.562.256 read from T0547.t06.many.frag # found chain 1r9lA in training set Warning: unaligning (T0547)D566 (1r9lA)P261 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DLDY 1r9lA 257 :IMQL T0547 567 :IHAI 1r9lA 262 :VADI Number of specific fragments extracted= 2 number of extra gaps= 1 total=107356 # 1fs7A.562.431 read from T0547.t06.many.frag # found chain 1fs7A in training set Warning: unaligning (T0547)D564 (1fs7A)K456 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1fs7A 454 :LA T0547 565 :YDIHAI 1fs7A 457 :VDMEAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=107358 # 1i3jA.562.91 read from T0547.t06.many.frag # found chain 1i3jA in template set T0547 562 :DLDYDIHAI 1i3jA 221 :HFKISSGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107359 # 1u8bA.562.101 read from T0547.t06.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 562 :DL 1u8bA 108 :QV T0547 567 :IHAI 1u8bA 113 :PFHL Number of specific fragments extracted= 2 number of extra gaps= 0 total=107361 # 1oaiA.562.30 read from T0547.t06.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1oaiA)D595 because D (zeta) conformation "forbidden" or filtered. T0547 562 :DL 1oaiA 591 :DN T0547 565 :Y 1oaiA 594 :W T0547 567 :IHAI 1oaiA 596 :YTRS Number of specific fragments extracted= 3 number of extra gaps= 2 total=107364 # 2b5aA.562.60 read from T0547.t06.many.frag # found chain 2b5aA in training set T0547 562 :DLDYDIHAI 2b5aA 61 :ALDIPASTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107365 # 1k6kA.562.125 read from T0547.t06.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)E128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1k6kA)S130 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DL 1k6kA 126 :KH T0547 565 :Y 1k6kA 129 :V T0547 567 :IHAI 1k6kA 131 :RLDV Number of specific fragments extracted= 3 number of extra gaps= 2 total=107368 # 1r9jA.562.638 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 562 :DLDYDIHAI 1r9jA 637 :KFGITVEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107369 # 1ts9A.562.77 read from T0547.t06.many.frag # found chain 1ts9A in training set Warning: unaligning (T0547)Y565 (1ts9A)F81 because Y (epsilon') conformation "forbidden" or filtered. T0547 562 :DLD 1ts9A 78 :LIN T0547 566 :DIHAI 1ts9A 82 :RPEDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=107371 # 1zc6A.562.190 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)D564 (1zc6A)G193 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1zc6A)D195 because Y (epsilon') conformation "forbidden" or filtered. T0547 562 :DL 1zc6A 191 :FV T0547 565 :Y 1zc6A 194 :G T0547 567 :IHAI 1zc6A 196 :WQAM Number of specific fragments extracted= 3 number of extra gaps= 2 total=107374 # 1u3eM.562.143 read from T0547.t06.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1u3eM)T148 because E (beta_S) conformation "forbidden" or filtered. T0547 562 :DL 1u3eM 144 :EL T0547 565 :Y 1u3eM 147 :L T0547 567 :IHAI 1u3eM 149 :RGKV Number of specific fragments extracted= 3 number of extra gaps= 2 total=107377 # 2a2cA.562.293 read from T0547.t06.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)D564 (2a2cA)G276 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (2a2cA)S278 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DL 2a2cA 274 :KL T0547 565 :Y 2a2cA 277 :I T0547 567 :IHAI 2a2cA 279 :LEEM Number of specific fragments extracted= 3 number of extra gaps= 2 total=107380 # 1msk.562.309 read from T0547.t06.many.frag # found chain 1msk in template set Warning: unaligning (T0547)D564 (1msk)G1208 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1msk 1206 :RK T0547 565 :YDIHAI 1msk 1209 :MSVTEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=107382 # 1whzA.562.58 read from T0547.t06.many.frag # found chain 1whzA in training set T0547 562 :DLDYDIHAI 1whzA 59 :DAGLTEEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107383 # 1z53A.562.249 read from T0547.t06.many.frag # found chain 1z53A in template set T0547 562 :DLDYDIHAI 1z53A 250 :EYANDQDKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107384 # 2a6cA.562.28 read from T0547.t06.many.frag # found chain 2a6cA in template set Warning: unaligning (T0547)D564 (2a6cA)G19 because T (delta_L) conformation "forbidden" or filtered. T0547 562 :DL 2a6cA 17 :NS T0547 565 :YDIHAI 2a6cA 20 :LTQFKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=107386 # 1t9iA.562.113 read from T0547.t06.many.frag # found chain 1t9iA in training set T0547 562 :DLDYDIHAI 1t9iA 114 :SAKESPDKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107387 # 2b8nA.562.385 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)D566 (2b8nA)D378 because E (beta_S) conformation "forbidden" or filtered. T0547 562 :DLDY 2b8nA 374 :AMGE T0547 567 :IHAI 2b8nA 379 :PYQY Number of specific fragments extracted= 2 number of extra gaps= 1 total=107389 # 1zbsA.562.173 read from T0547.t06.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)D564 (1zbsA)G176 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1zbsA 174 :EY T0547 565 :YDIHAI 1zbsA 177 :LTSADI Number of specific fragments extracted= 2 number of extra gaps= 1 total=107391 # 1p4xA.562.182 read from T0547.t06.many.frag # found chain 1p4xA in template set Warning: unaligning (T0547)D566 (1p4xA)K187 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DLDY 1p4xA 183 :TIHH T0547 567 :IHAI 1p4xA 188 :YPQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=107393 # 1fc3A.562.56 read from T0547.t06.many.frag # found chain 1fc3A in template set Warning: unaligning (T0547)D564 (1fc3A)N198 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1fc3A)T200 because E (beta_S) conformation "forbidden" or filtered. T0547 562 :DL 1fc3A 196 :KY T0547 565 :Y 1fc3A 199 :T T0547 567 :IHAI 1fc3A 201 :ASRV Number of specific fragments extracted= 3 number of extra gaps= 2 total=107396 # 1c3cA.562.331 read from T0547.t06.many.frag # found chain 1c3cA in training set T0547 562 :DLDYDIHAI 1c3cA 333 :NMKVNEERM Number of specific fragments extracted= 1 number of extra gaps= 0 total=107397 # 1k6kA.562.45 read from T0547.t06.many.frag # found chain 1k6kA in training set Warning: unaligning (T0547)D564 (1k6kA)S48 because L (left) conformation "forbidden" or filtered. T0547 562 :DL 1k6kA 46 :AC T0547 565 :YDIHAI 1k6kA 49 :VDLVAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=107399 # 1ytaA.562.75 read from T0547.t06.many.frag # found chain 1ytaA in template set T0547 562 :DLDYDIHAI 1ytaA 76 :ASTMGDREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107400 # 1tjvA.562.353 read from T0547.t06.many.frag # found chain 1tjvA in template set T0547 562 :DLDYDIHAI 1tjvA 354 :TLQISKENM Number of specific fragments extracted= 1 number of extra gaps= 0 total=107401 # 1n3lA.562.300 read from T0547.t06.many.frag # found chain 1n3lA in training set Warning: unaligning (T0547)L563 (1n3lA)E302 because L (left) conformation "forbidden" or filtered. T0547 562 :D 1n3lA 301 :A T0547 564 :DYDIHAI 1n3lA 303 :VVHPGDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=107403 # 1zupA.562.296 read from T0547.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0547)D564 (1zupA)L287 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DL 1zupA 285 :YY T0547 565 :YDIHAI 1zupA 288 :TDKNYM Number of specific fragments extracted= 2 number of extra gaps= 1 total=107405 # 2ao9A.562.56 read from T0547.t06.many.frag # found chain 2ao9A in template set Warning: unaligning (T0547)D564 (2ao9A)G59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (2ao9A)N61 because P (beta_P) conformation "forbidden" or filtered. T0547 562 :DL 2ao9A 57 :EL T0547 565 :Y 2ao9A 60 :I T0547 567 :IHAI 2ao9A 62 :RTTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=107408 # 2bmaA.562.410 read from T0547.t06.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)D562 (2bmaA)F390 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L563 (2bmaA)S391 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (2bmaA)T394 because P (beta_P) conformation "forbidden" or filtered. T0547 564 :DY 2bmaA 392 :HW T0547 567 :IHAI 2bmaA 395 :RETV Number of specific fragments extracted= 2 number of extra gaps= 2 total=107410 # 2auwA.563.101 read from T0547.t06.many.frag # found chain 2auwA in template set Warning: unaligning (T0547)D564 (2auwA)N101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (2auwA)S103 because P (beta_P) conformation "forbidden" or filtered. T0547 563 :L 2auwA 100 :N T0547 565 :Y 2auwA 102 :L T0547 567 :IHAIM 2auwA 104 :LTTAA Number of specific fragments extracted= 3 number of extra gaps= 2 total=107413 # 1fs7A.563.432 read from T0547.t06.many.frag # found chain 1fs7A in training set T0547 563 :LDYDIHAIM 1fs7A 455 :AKVDMEAFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107414 # 1r9lA.563.257 read from T0547.t06.many.frag # found chain 1r9lA in training set Warning: unaligning (T0547)D566 (1r9lA)P261 because P (beta_P) conformation "forbidden" or filtered. T0547 563 :LDY 1r9lA 258 :MQL T0547 567 :IHAIM 1r9lA 262 :VADIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=107416 # 1fc3A.563.57 read from T0547.t06.many.frag # found chain 1fc3A in template set T0547 563 :LDYDIHAIM 1fc3A 197 :YNTTASRVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107417 # 1r9jA.563.639 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)D564 (1r9jA)G639 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1r9jA)T641 because E (beta_S) conformation "forbidden" or filtered. T0547 563 :L 1r9jA 638 :F T0547 565 :Y 1r9jA 640 :I T0547 567 :IHAIM 1r9jA 642 :VEEVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=107420 # 1ts9A.563.78 read from T0547.t06.many.frag # found chain 1ts9A in training set Warning: unaligning (T0547)D566 (1ts9A)R82 because P (beta_P) conformation "forbidden" or filtered. T0547 563 :LDY 1ts9A 79 :INF T0547 567 :IHAIM 1ts9A 83 :PEDRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=107422 # 2b5aA.563.61 read from T0547.t06.many.frag # found chain 2b5aA in training set T0547 563 :LDYDIHAIM 2b5aA 62 :LDIPASTFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107423 # 1oaiA.563.31 read from T0547.t06.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. T0547 563 :L 1oaiA 592 :N T0547 566 :DIHAIM 1oaiA 595 :DYTRSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=107425 # 1msk.563.310 read from T0547.t06.many.frag # found chain 1msk in template set Warning: unaligning (T0547)D564 (1msk)G1208 because L (left) conformation "forbidden" or filtered. T0547 563 :L 1msk 1207 :K T0547 565 :YDIHAIM 1msk 1209 :MSVTEVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=107427 # 1u3eM.563.144 read from T0547.t06.many.frag # found chain 1u3eM in template set T0547 563 :LDYDIHAIM 1u3eM 145 :LGLTRGKVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107428 # 1i3jA.563.92 read from T0547.t06.many.frag # found chain 1i3jA in template set T0547 563 :LDYDIHAIM 1i3jA 222 :FKISSGLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107429 # 1zc6A.563.191 read from T0547.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0547)D564 (1zc6A)G193 because T (delta_L) conformation "forbidden" or filtered. T0547 563 :L 1zc6A 192 :V T0547 565 :YDIHAIM 1zc6A 194 :GDWQAMM Number of specific fragments extracted= 2 number of extra gaps= 1 total=107431 # 1zbsA.563.174 read from T0547.t06.many.frag # found chain 1zbsA in template set Warning: unaligning (T0547)D564 (1zbsA)G176 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1zbsA)T178 because E (beta_S) conformation "forbidden" or filtered. T0547 563 :L 1zbsA 175 :Y T0547 565 :Y 1zbsA 177 :L T0547 567 :IHAIM 1zbsA 179 :SADII Number of specific fragments extracted= 3 number of extra gaps= 2 total=107434 # 1j5sA.563.437 read from T0547.t06.many.frag # found chain 1j5sA in template set T0547 563 :LDYDIHAIM 1j5sA 426 :GQIPIKEAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107435 # 1z53A.563.250 read from T0547.t06.many.frag # found chain 1z53A in template set T0547 563 :LDYDIHAIM 1z53A 251 :YANDQDKFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107436 # 1k6kA.563.126 read from T0547.t06.many.frag # found chain 1k6kA in training set T0547 563 :LDYDIHAIM 1k6kA 127 :HEVSRLDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107437 # 1u8bA.563.102 read from T0547.t06.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)D564 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u8bA)S112 Warning: unaligning (T0547)D566 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u8bA)S112 T0547 563 :L 1u8bA 109 :V T0547 567 :IHAIM 1u8bA 113 :PFHLH Number of specific fragments extracted= 2 number of extra gaps= 0 total=107439 # 2a2cA.563.294 read from T0547.t06.many.frag # found chain 2a2cA in training set Warning: unaligning (T0547)D564 (2a2cA)G276 because L (left) conformation "forbidden" or filtered. T0547 563 :L 2a2cA 275 :L T0547 565 :YDIHAIM 2a2cA 277 :ISLEEML Number of specific fragments extracted= 2 number of extra gaps= 1 total=107441 # 2a84A.563.223 read from T0547.t06.many.frag # found chain 2a84A in training set Warning: unaligning (T0547)D566 (2a84A)G227 because S (epsilon) conformation "forbidden" or filtered. T0547 563 :LDY 2a84A 224 :ATA T0547 567 :IHAIM 2a84A 228 :AQAAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=107443 # 1ytaA.563.76 read from T0547.t06.many.frag # found chain 1ytaA in template set T0547 563 :LDYDIHAIM 1ytaA 77 :STMGDREAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107444 # 1p4xA.563.183 read from T0547.t06.many.frag # found chain 1p4xA in template set T0547 563 :LDYDIHAIM 1p4xA 184 :IHHKYPQTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107445 # 1v4vA.563.316 read from T0547.t06.many.frag # found chain 1v4vA in training set Warning: unaligning (T0547)D564 (1v4vA)G318 because S (epsilon) conformation "forbidden" or filtered. T0547 563 :L 1v4vA 317 :A T0547 565 :YDIHAIM 1v4vA 319 :TDPEGVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=107447 # 1x6iA.563.15 read from T0547.t06.many.frag # found chain 1x6iA in training set T0547 563 :LDYDIHAIM 1x6iA 13 :CRRGMRELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107448 # 1t9iA.563.114 read from T0547.t06.many.frag # found chain 1t9iA in training set T0547 563 :LDYDIHAIM 1t9iA 115 :AKESPDKFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107449 # 1o7jA.563.312 read from T0547.t06.many.frag # found chain 1o7jA in training set Warning: unaligning (T0547)D564 (1o7jA)T314 because Y (epsilon') conformation "forbidden" or filtered. T0547 563 :L 1o7jA 313 :R T0547 565 :YDIHAIM 1o7jA 315 :SDPKVIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=107451 # 1u7kA.563.29 read from T0547.t06.many.frag # found chain 1u7kA in template set T0547 563 :LDYDIHAIM 1u7kA 30 :FSEDPGKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107452 # 1tjvA.563.354 read from T0547.t06.many.frag # found chain 1tjvA in template set T0547 563 :LDYDIHAIM 1tjvA 355 :LQISKENME Number of specific fragments extracted= 1 number of extra gaps= 0 total=107453 # 2bmaA.563.411 read from T0547.t06.many.frag # found chain 2bmaA in template set Warning: unaligning (T0547)L563 (2bmaA)S391 because Y (epsilon') conformation "forbidden" or filtered. T0547 564 :DYDIHAIM 2bmaA 392 :HWTRETVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=107454 # 1yvvA.563.241 read from T0547.t06.many.frag # found chain 1yvvA in template set T0547 563 :LDYDIHAIM 1yvvA 242 :LDASREQVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107455 # 2b8nA.563.386 read from T0547.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0547)D566 (2b8nA)D378 because E (beta_S) conformation "forbidden" or filtered. T0547 563 :LDY 2b8nA 375 :MGE T0547 567 :IHAIM 2b8nA 379 :PYQYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=107457 # 1fs7A.564.433 read from T0547.t06.many.frag # found chain 1fs7A in training set Warning: unaligning (T0547)D564 (1fs7A)K456 because L (left) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1fs7A 457 :VDMEAFIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=107458 # 2a84A.564.224 read from T0547.t06.many.frag # found chain 2a84A in training set Warning: unaligning (T0547)D566 (2a84A)G227 because S (epsilon) conformation "forbidden" or filtered. T0547 564 :DY 2a84A 225 :TA T0547 567 :IHAIMD 2a84A 228 :AQAALD Number of specific fragments extracted= 2 number of extra gaps= 1 total=107460 # 1oaiA.564.32 read from T0547.t06.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)D564 (1oaiA)N593 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. T0547 566 :DIHAIMD 1oaiA 595 :DYTRSAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=107461 # 1fc3A.564.58 read from T0547.t06.many.frag # found chain 1fc3A in template set Warning: unaligning (T0547)D564 (1fc3A)N198 because L (left) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1fc3A 199 :TTASRVER Number of specific fragments extracted= 1 number of extra gaps= 1 total=107462 # 1ts9A.564.79 read from T0547.t06.many.frag # found chain 1ts9A in training set Warning: unaligning (T0547)D564 (1ts9A)N80 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1ts9A)R82 because P (beta_P) conformation "forbidden" or filtered. T0547 565 :Y 1ts9A 81 :F T0547 567 :IHAIMD 1ts9A 83 :PEDRIK Number of specific fragments extracted= 2 number of extra gaps= 2 total=107464 # 1r9jA.564.640 read from T0547.t06.many.frag # found chain 1r9jA in template set Warning: unaligning (T0547)D564 (1r9jA)G639 because T (delta_L) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1r9jA 640 :ITVEEVVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=107465 # 2auwA.564.102 read from T0547.t06.many.frag # found chain 2auwA in template set Warning: unaligning (T0547)D564 (2auwA)N101 because L (left) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 2auwA 102 :LSLTTAAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=107466 # 1hx6A.564.316 read from T0547.t06.many.frag # found chain 1hx6A in training set Warning: unaligning (T0547)D564 (1hx6A)K318 because P (beta_P) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1hx6A 319 :LDPKTWAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=107467 # 1u7kA.564.30 read from T0547.t06.many.frag # found chain 1u7kA in template set T0547 564 :DYDIHAIMD 1u7kA 31 :SEDPGKLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107468 # 1o7jA.564.313 read from T0547.t06.many.frag # found chain 1o7jA in training set T0547 564 :DYDIHAIMD 1o7jA 314 :TSDPKVIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107469 # 1r9lA.564.258 read from T0547.t06.many.frag # found chain 1r9lA in training set T0547 564 :DYDIHAIMD 1r9lA 259 :QLPVADINA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107470 # 1x6iA.564.16 read from T0547.t06.many.frag # found chain 1x6iA in training set T0547 564 :DYDIHAIMD 1x6iA 14 :RRGMRELDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107471 # 1p4xA.564.184 read from T0547.t06.many.frag # found chain 1p4xA in template set T0547 564 :DYDIHAIMD 1p4xA 185 :HHKYPQTVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107472 # 1w2yA.564.211 read from T0547.t06.many.frag # found chain 1w2yA in training set Warning: unaligning (T0547)D564 because of BadResidue code BAD_PEPTIDE at template residue (1w2yA)E212 T0547 565 :YDIHAIMD 1w2yA 213 :LDFDTIYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=107473 2a2mA expands to /projects/compbio/data/pdb/2a2m.pdb.gz 2a2mA:Skipped atom 161, because occupancy 0.400 <= existing 0.600 in 2a2mA Skipped atom 165, because occupancy 0.400 <= existing 0.600 in 2a2mA Skipped atom 167, because occupancy 0.400 <= existing 0.600 in 2a2mA Skipped atom 170, because occupancy 0.500 <= existing 0.500 in 2a2mA Skipped atom 174, because occupancy 0.500 <= existing 0.500 in 2a2mA Skipped atom 176, because occupancy 0.500 <= existing 0.500 in 2a2mA Skipped atom 178, because occupancy 0.500 <= existing 0.500 in 2a2mA Skipped atom 180, because occupancy 0.500 <= existing 0.500 in 2a2mA Skipped atom 311, because occupancy 0.400 <= existing 0.600 in 2a2mA Skipped atom 315, because occupancy 0.400 <= existing 0.600 in 2a2mA Skipped atom 317, because occupancy 0.400 <= existing 0.600 in 2a2mA Skipped atom 341, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 345, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 347, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 349, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 351, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 353, because occupancy 0.300 <= existing 0.700 in 2a2mA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 697, because occupancy 0.400 <= existing 0.600 in 2a2mA Skipped atom 701, because occupancy 0.400 <= existing 0.600 in 2a2mA Skipped atom 703, because occupancy 0.400 <= existing 0.600 in 2a2mA Skipped atom 705, because occupancy 0.400 <= existing 0.600 in 2a2mA Skipped atom 707, because occupancy 0.400 <= existing 0.600 in 2a2mA Skipped atom 709, because occupancy 0.400 <= existing 0.600 in 2a2mA Skipped atom 887, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 891, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 893, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 895, because occupancy 0.300 <= existing 0.700 in 2a2mA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1314, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1318, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1320, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1322, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1324, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1404, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1408, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1410, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1412, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1414, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1540, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1544, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1546, because occupancy 0.300 <= existing 0.700 in 2a2mA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1658, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1662, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1664, because occupancy 0.300 <= existing 0.700 in 2a2mA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1784, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1788, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1790, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1792, because occupancy 0.300 <= existing 0.700 in 2a2mA Skipped atom 1794, because occupancy 0.300 <= existing 0.700 in 2a2mA # 2a2mA.564.223 read from T0547.t06.many.frag # adding 2a2mA to template set # found chain 2a2mA in template set T0547 564 :DYDIHAIMD 2a2mA 212 :KIDEDKAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107474 # 1ytaA.564.77 read from T0547.t06.many.frag # found chain 1ytaA in template set Warning: unaligning (T0547)D566 (1ytaA)G80 because P (beta_P) conformation "forbidden" or filtered. T0547 564 :DY 1ytaA 78 :TM T0547 567 :IHAIMD 1ytaA 81 :DREAEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=107476 # 1xszA.564.328 read from T0547.t06.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)D566 (1xszA)E329 because P (beta_P) conformation "forbidden" or filtered. T0547 564 :DY 1xszA 327 :DY T0547 567 :IHAIMD 1xszA 330 :VGDLIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=107478 # 1z53A.564.251 read from T0547.t06.many.frag # found chain 1z53A in template set T0547 564 :DYDIHAIMD 1z53A 252 :ANDQDKFFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107479 # 1zc6A.564.192 read from T0547.t06.many.frag # found chain 1zc6A in template set T0547 564 :DYDIHAIMD 1zc6A 193 :GGDWQAMMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107480 # 2b5aA.564.62 read from T0547.t06.many.frag # found chain 2b5aA in training set Warning: unaligning (T0547)D564 (2b5aA)D63 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (2b5aA)P65 because P (beta_P) conformation "forbidden" or filtered. T0547 565 :Y 2b5aA 64 :I T0547 567 :IHAIMD 2b5aA 66 :ASTFFR Number of specific fragments extracted= 2 number of extra gaps= 2 total=107482 # 1dk0A.564.140 read from T0547.t06.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)Y565 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. T0547 564 :D 1dk0A 141 :S T0547 566 :DIHAIMD 1dk0A 143 :DTGALET Number of specific fragments extracted= 2 number of extra gaps= 1 total=107484 # 1t9iA.564.115 read from T0547.t06.many.frag # found chain 1t9iA in training set T0547 564 :DYDIHAIMD 1t9iA 116 :KESPDKFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107485 # 1v4vA.564.317 read from T0547.t06.many.frag # found chain 1v4vA in training set T0547 564 :DYDIHAIMD 1v4vA 318 :GTDPEGVYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107486 # 1ng6A.564.93 read from T0547.t06.many.frag # found chain 1ng6A in training set T0547 564 :DYDIHAIMD 1ng6A 94 :QLSEEELRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107487 # 1msk.564.311 read from T0547.t06.many.frag # found chain 1msk in template set T0547 564 :DYDIHAIMD 1msk 1208 :GMSVTEVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=107488 # 1yvvA.564.242 read from T0547.t06.many.frag # found chain 1yvvA in template set T0547 564 :DYDIHAIMD 1yvvA 243 :DASREQVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107489 # 1y0uA.564.42 read from T0547.t06.many.frag # found chain 1y0uA in training set Warning: unaligning (T0547)D564 (1y0uA)G41 because T (delta_L) conformation "forbidden" or filtered. T0547 565 :YDIHAIMD 1y0uA 42 :RSEEEIMQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=107490 # 1z2uA.564.130 read from T0547.t06.many.frag # found chain 1z2uA in training set T0547 564 :DYDIHAIMD 1z2uA 128 :KTDRERYNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107491 # 1u3eM.564.145 read from T0547.t06.many.frag # found chain 1u3eM in template set Warning: unaligning (T0547)D564 (1u3eM)G146 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1u3eM)T148 because E (beta_S) conformation "forbidden" or filtered. T0547 565 :Y 1u3eM 147 :L T0547 567 :IHAIMD 1u3eM 149 :RGKVTD Number of specific fragments extracted= 2 number of extra gaps= 2 total=107493 # 1wbeA.564.169 read from T0547.t06.many.frag # found chain 1wbeA in training set T0547 564 :DYDIHAIMD 1wbeA 170 :NVTEEECLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107494 # 1r9jA.565.641 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 565 :YDIHAIMDI 1r9jA 640 :ITVEEVVRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107495 # 2a84A.565.225 read from T0547.t06.many.frag # found chain 2a84A in training set T0547 565 :YDIHAIMDI 2a84A 226 :AGAQAALDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107496 # 1ng6A.565.94 read from T0547.t06.many.frag # found chain 1ng6A in training set T0547 565 :YDIHAIMDI 1ng6A 95 :LSEEELRTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107497 # 1u7kA.565.31 read from T0547.t06.many.frag # found chain 1u7kA in template set T0547 565 :YDIHAIMDI 1u7kA 32 :EDPGKLTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107498 # 1pswA.565.329 read from T0547.t06.many.frag # found chain 1pswA in template set T0547 565 :YDIHAIMDI 1pswA 330 :ITPQRVLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107499 # 1ts9A.565.80 read from T0547.t06.many.frag # found chain 1ts9A in training set T0547 565 :YDIHAIMDI 1ts9A 81 :FRPEDRIKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107500 # 1u84A.565.44 read from T0547.t06.many.frag # found chain 1u84A in training set T0547 565 :YDIHAIMDI 1u84A 42 :EDARTLAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107501 # 1wbeA.565.170 read from T0547.t06.many.frag # found chain 1wbeA in training set T0547 565 :YDIHAIMDI 1wbeA 171 :VTEEECLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107502 # 1w2yA.565.212 read from T0547.t06.many.frag # found chain 1w2yA in training set T0547 565 :YDIHAIMDI 1w2yA 213 :LDFDTIYKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107503 # 1dk0A.565.141 read from T0547.t06.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)Y565 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)D566 (1dk0A)D143 because D (zeta) conformation "forbidden" or filtered. T0547 567 :IHAIMDI 1dk0A 144 :TGALETA Number of specific fragments extracted= 1 number of extra gaps= 1 total=107504 # 1ta8A.565.261 read from T0547.t06.many.frag # found chain 1ta8A in training set T0547 565 :YDIHAIMDI 1ta8A 262 :QSIDEVWAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=107505 # 1ka8A.565.53 read from T0547.t06.many.frag # found chain 1ka8A in template set T0547 565 :YDIHAIMDI 1ka8A 54 :LSLKMFGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107506 # 1fc3A.565.59 read from T0547.t06.many.frag # found chain 1fc3A in template set Warning: unaligning (T0547)Y565 (1fc3A)T199 because Y (epsilon') conformation "forbidden" or filtered. T0547 566 :DIHAIMDI 1fc3A 200 :TASRVERA Number of specific fragments extracted= 1 number of extra gaps= 1 total=107507 # 1x6iA.565.17 read from T0547.t06.many.frag # found chain 1x6iA in training set T0547 565 :YDIHAIMDI 1x6iA 15 :RGMRELDIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107508 # 1p4xA.565.185 read from T0547.t06.many.frag # found chain 1p4xA in template set Warning: unaligning (T0547)D566 (1p4xA)K187 because P (beta_P) conformation "forbidden" or filtered. T0547 565 :Y 1p4xA 186 :H T0547 567 :IHAIMDI 1p4xA 188 :YPQTVRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=107510 # 1hx6A.565.317 read from T0547.t06.many.frag # found chain 1hx6A in training set T0547 565 :YDIHAIMDI 1hx6A 319 :LDPKTWAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107511 # 1tv8A.565.295 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 565 :YDIHAIMDI 1tv8A 296 :VTDEELKEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107512 # 1e0tA.565.423 read from T0547.t06.many.frag # found chain 1e0tA in template set T0547 565 :YDIHAIMDI 1e0tA 424 :TSTDDFYRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107513 # 1xszA.565.329 read from T0547.t06.many.frag # found chain 1xszA in training set Warning: unaligning (T0547)D566 (1xszA)E329 because P (beta_P) conformation "forbidden" or filtered. T0547 565 :Y 1xszA 328 :Y T0547 567 :IHAIMDI 1xszA 330 :VGDLIKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=107515 # 1ytaA.565.78 read from T0547.t06.many.frag # found chain 1ytaA in template set T0547 565 :YDIHAIMDI 1ytaA 79 :MGDREAELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107516 # 1fs7A.565.434 read from T0547.t06.many.frag # found chain 1fs7A in training set T0547 565 :YDIHAIMDI 1fs7A 457 :VDMEAFIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107517 # 1v74B.565.68 read from T0547.t06.many.frag # found chain 1v74B in template set T0547 565 :YDIHAIMDI 1v74B 69 :IDDNGLKVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107518 # 1ks9A.565.221 read from T0547.t06.many.frag # found chain 1ks9A in training set Warning: unaligning (T0547)D566 (1ks9A)S223 because E (beta_S) conformation "forbidden" or filtered. T0547 565 :Y 1ks9A 222 :T T0547 567 :IHAIMDI 1ks9A 224 :AEDLRDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=107520 # 1xrjA.565.156 read from T0547.t06.many.frag # found chain 1xrjA in template set T0547 565 :YDIHAIMDI 1xrjA 157 :TDADTRLSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107521 # 2auwA.565.103 read from T0547.t06.many.frag # found chain 2auwA in template set T0547 565 :YDIHAIMDI 2auwA 102 :LSLTTAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107522 # 1pdo.565.107 read from T0547.t06.many.frag # found chain 1pdo in training set T0547 565 :YDIHAIMDI 1pdo 109 :PSFDELVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107523 # 1o7jA.565.314 read from T0547.t06.many.frag # found chain 1o7jA in training set T0547 565 :YDIHAIMDI 1o7jA 315 :SDPKVIQEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=107524 # 1mvlA.565.183 read from T0547.t06.many.frag # found chain 1mvlA in template set T0547 565 :YDIHAIMDI 1mvlA 184 :AEPSLIYST Number of specific fragments extracted= 1 number of extra gaps= 0 total=107525 # 1zpvA.565.56 read from T0547.t06.many.frag # found chain 1zpvA in template set Warning: unaligning (T0547)D566 (1zpvA)D55 because D (zeta) conformation "forbidden" or filtered. T0547 565 :Y 1zpvA 54 :Q T0547 567 :IHAIMDI 1zpvA 56 :FTYLRNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=107527 # 1oaiA.565.33 read from T0547.t06.many.frag # found chain 1oaiA in training set Warning: unaligning (T0547)Y565 (1oaiA)W594 because L (left) conformation "forbidden" or filtered. T0547 566 :DIHAIMDI 1oaiA 595 :DYTRSAQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=107528 # 1r9jA.566.642 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 566 :DIHAIMDIL 1r9jA 641 :TVEEVVRTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107529 # 1u7kA.566.32 read from T0547.t06.many.frag # found chain 1u7kA in template set T0547 566 :DIHAIMDIL 1u7kA 33 :DPGKLTALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107530 # 2a84A.566.226 read from T0547.t06.many.frag # found chain 2a84A in training set T0547 566 :DIHAIMDIL 2a84A 227 :GAQAALDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107531 # 1u84A.566.45 read from T0547.t06.many.frag # found chain 1u84A in training set T0547 566 :DIHAIMDIL 1u84A 43 :DARTLAARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107532 # 1e0tA.566.424 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)D566 (1e0tA)S425 because Y (epsilon') conformation "forbidden" or filtered. T0547 567 :IHAIMDIL 1e0tA 426 :TDDFYRLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=107533 # 1pswA.566.330 read from T0547.t06.many.frag # found chain 1pswA in template set T0547 566 :DIHAIMDIL 1pswA 331 :TPQRVLEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107534 # 1ta8A.566.262 read from T0547.t06.many.frag # found chain 1ta8A in training set Warning: unaligning (T0547)D566 (1ta8A)S263 because Y (epsilon') conformation "forbidden" or filtered. T0547 567 :IHAIMDIL 1ta8A 264 :IDEVWAYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=107535 # 1w2yA.566.213 read from T0547.t06.many.frag # found chain 1w2yA in training set T0547 566 :DIHAIMDIL 1w2yA 214 :DFDTIYKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107536 # 1wbeA.566.171 read from T0547.t06.many.frag # found chain 1wbeA in training set T0547 566 :DIHAIMDIL 1wbeA 172 :TEEECLEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107537 # 1fc3A.566.60 read from T0547.t06.many.frag # found chain 1fc3A in template set T0547 566 :DIHAIMDIL 1fc3A 200 :TASRVERAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107538 # 1ks9A.566.222 read from T0547.t06.many.frag # found chain 1ks9A in training set T0547 566 :DIHAIMDIL 1ks9A 223 :SAEDLRDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107539 # 1tv8A.566.296 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 566 :DIHAIMDIL 1tv8A 297 :TDEELKEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107540 # 1dk0A.566.142 read from T0547.t06.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)D566 (1dk0A)D143 because D (zeta) conformation "forbidden" or filtered. T0547 567 :IHAIMDIL 1dk0A 144 :TGALETAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=107541 # 1ka8A.566.54 read from T0547.t06.many.frag # found chain 1ka8A in template set T0547 566 :DIHAIMDIL 1ka8A 55 :SLKMFGLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107542 # 1ng6A.566.95 read from T0547.t06.many.frag # found chain 1ng6A in training set T0547 566 :DIHAIMDIL 1ng6A 96 :SEEELRTIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107543 # 1mvlA.566.184 read from T0547.t06.many.frag # found chain 1mvlA in template set T0547 566 :DIHAIMDIL 1mvlA 185 :EPSLIYSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107544 # 1pdo.566.108 read from T0547.t06.many.frag # found chain 1pdo in training set T0547 566 :DIHAIMDIL 1pdo 110 :SFDELVALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107545 # 1xrjA.566.157 read from T0547.t06.many.frag # found chain 1xrjA in template set T0547 566 :DIHAIMDIL 1xrjA 158 :DADTRLSRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107546 # 1v74B.566.69 read from T0547.t06.many.frag # found chain 1v74B in template set T0547 566 :DIHAIMDIL 1v74B 70 :DDNGLKVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107547 # 1hx6A.566.318 read from T0547.t06.many.frag # found chain 1hx6A in training set T0547 566 :DIHAIMDIL 1hx6A 320 :DPKTWAAQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107548 # 1ytaA.566.79 read from T0547.t06.many.frag # found chain 1ytaA in template set T0547 566 :DIHAIMDIL 1ytaA 80 :GDREAELAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107549 # 1unnC.566.71 read from T0547.t06.many.frag # found chain 1unnC in template set T0547 566 :DIHAIMDIL 1unnC 308 :NKADLIATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107550 # 1v4vA.566.319 read from T0547.t06.many.frag # found chain 1v4vA in training set T0547 566 :DIHAIMDIL 1v4vA 320 :DPEGVYRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107551 # 1o7jA.566.315 read from T0547.t06.many.frag # found chain 1o7jA in training set T0547 566 :DIHAIMDIL 1o7jA 316 :DPKVIQEYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107552 # 1no1A.566.40 read from T0547.t06.many.frag # found chain 1no1A in template set T0547 566 :DIHAIMDIL 1no1A 41 :ELEEIMNNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107553 # 1xszA.566.330 read from T0547.t06.many.frag # found chain 1xszA in training set T0547 566 :DIHAIMDIL 1xszA 329 :EVGDLIKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=107554 # 1zpvA.566.57 read from T0547.t06.many.frag # found chain 1zpvA in template set T0547 566 :DIHAIMDIL 1zpvA 55 :DFTYLRNEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107555 # 1hbnB.566.262 read from T0547.t06.many.frag # found chain 1hbnB in training set Warning: unaligning (T0547)D566 (1hbnB)T264 because Y (epsilon') conformation "forbidden" or filtered. T0547 567 :IHAIMDIL 1hbnB 265 :VGSVIADL Number of specific fragments extracted= 1 number of extra gaps= 1 total=107556 # 1f9yA.566.64 read from T0547.t06.many.frag # found chain 1f9yA in training set T0547 566 :DIHAIMDIL 1f9yA 65 :APEELLNHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107557 # 1ts9A.566.81 read from T0547.t06.many.frag # found chain 1ts9A in training set T0547 566 :DIHAIMDIL 1ts9A 82 :RPEDRIKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107558 # 2a84A.567.227 read from T0547.t06.many.frag # found chain 2a84A in training set T0547 567 :IHAIMDILN 2a84A 228 :AQAALDAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107559 # 1r9jA.567.643 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 567 :IHAIMDILN 1r9jA 642 :VEEVVRTGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107560 # 1e0tA.567.425 read from T0547.t06.many.frag # found chain 1e0tA in template set T0547 567 :IHAIMDILN 1e0tA 426 :TDDFYRLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107561 # 1u84A.567.46 read from T0547.t06.many.frag # found chain 1u84A in training set T0547 567 :IHAIMDILN 1u84A 44 :ARTLAARIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107562 # 1ng6A.567.96 read from T0547.t06.many.frag # found chain 1ng6A in training set T0547 567 :IHAIMDILN 1ng6A 97 :EEELRTIVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107563 # 1ta8A.567.263 read from T0547.t06.many.frag # found chain 1ta8A in training set T0547 567 :IHAIMDILN 1ta8A 264 :IDEVWAYIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107564 # 1pswA.567.331 read from T0547.t06.many.frag # found chain 1pswA in template set T0547 567 :IHAIMDILN 1pswA 332 :PQRVLEELN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107565 # 1u7kA.567.33 read from T0547.t06.many.frag # found chain 1u7kA in template set T0547 567 :IHAIMDILN 1u7kA 34 :PGKLTALIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107566 # 1wbeA.567.172 read from T0547.t06.many.frag # found chain 1wbeA in training set T0547 567 :IHAIMDILN 1wbeA 173 :EEECLEKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107567 # 1v74B.567.70 read from T0547.t06.many.frag # found chain 1v74B in template set T0547 567 :IHAIMDILN 1v74B 71 :DNGLKVEVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107568 # 1ka8A.567.55 read from T0547.t06.many.frag # found chain 1ka8A in template set T0547 567 :IHAIMDILN 1ka8A 56 :LKMFGLGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=107569 # 1w2yA.567.214 read from T0547.t06.many.frag # found chain 1w2yA in training set T0547 567 :IHAIMDILN 1w2yA 215 :FDTIYKKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107570 # 1dk0A.567.143 read from T0547.t06.many.frag # found chain 1dk0A in training set T0547 567 :IHAIMDILN 1dk0A 144 :TGALETALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107571 # 1fc3A.567.61 read from T0547.t06.many.frag # found chain 1fc3A in template set T0547 567 :IHAIMDILN 1fc3A 201 :ASRVERAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107572 # 1tv8A.567.297 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 567 :IHAIMDILN 1tv8A 298 :DEELKEQFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107573 # 1h54A.567.270 read from T0547.t06.many.frag # found chain 1h54A in template set T0547 567 :IHAIMDILN 1h54A 271 :QESLTAAMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=107574 # 1svsA.567.294 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 567 :IHAIMDILN 1svsA 296 :YEEAAAYIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107575 # 1mvlA.567.185 read from T0547.t06.many.frag # found chain 1mvlA in template set T0547 567 :IHAIMDILN 1mvlA 186 :PSLIYSTVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107576 # 1ks9A.567.223 read from T0547.t06.many.frag # found chain 1ks9A in training set T0547 567 :IHAIMDILN 1ks9A 224 :AEDLRDYVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=107577 # 2akaB.567.242 read from T0547.t06.many.frag # found chain 2akaB in template set T0547 567 :IHAIMDILN 2akaB 248 :ITAALAAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=107578 # 2igd.567.27 read from T0547.t06.many.frag # found chain 2igd in training set T0547 567 :IHAIMDILN 2igd 28 :AETAEKAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107579 # 1xrjA.567.158 read from T0547.t06.many.frag # found chain 1xrjA in template set T0547 567 :IHAIMDILN 1xrjA 159 :ADTRLSRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107580 # 1pdo.567.109 read from T0547.t06.many.frag # found chain 1pdo in training set T0547 567 :IHAIMDILN 1pdo 111 :FDELVALAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107581 # 1hlvA.567.96 read from T0547.t06.many.frag # found chain 1hlvA in template set T0547 567 :IHAIMDILN 1hlvA 97 :GIILKEKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107582 # 1qyrA.567.190 read from T0547.t06.many.frag # found chain 1qyrA in template set T0547 567 :IHAIMDILN 1qyrA 207 :VRVLSRITT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107583 # 1q7zA.567.540 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 567 :IHAIMDILN 1q7zA 541 :DETLMKTLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107584 # 1nekA.567.455 read from T0547.t06.many.frag # found chain 1nekA in template set T0547 567 :IHAIMDILN 1nekA 456 :PVAIRKALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107585 # 1zpvA.567.58 read from T0547.t06.many.frag # found chain 1zpvA in template set T0547 567 :IHAIMDILN 1zpvA 56 :FTYLRNEFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107586 # 1hx6A.567.319 read from T0547.t06.many.frag # found chain 1hx6A in training set T0547 567 :IHAIMDILN 1hx6A 321 :PKTWAAQTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107587 # 1v4vA.567.320 read from T0547.t06.many.frag # found chain 1v4vA in training set T0547 567 :IHAIMDILN 1v4vA 321 :PEGVYRVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107588 # 2a84A.568.228 read from T0547.t06.many.frag # found chain 2a84A in training set T0547 568 :HAIMDILNE 2a84A 229 :QAALDAARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107589 # 1r9jA.568.644 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 568 :HAIMDILNE 1r9jA 643 :EEVVRTGRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107590 # 1e0tA.568.426 read from T0547.t06.many.frag # found chain 1e0tA in template set T0547 568 :HAIMDILNE 1e0tA 427 :DDFYRLGKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107591 # 1u84A.568.47 read from T0547.t06.many.frag # found chain 1u84A in training set T0547 568 :HAIMDILNE 1u84A 45 :RTLAARIQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107592 # 1pswA.568.332 read from T0547.t06.many.frag # found chain 1pswA in template set T0547 568 :HAIMDILNE 1pswA 333 :QRVLEELNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107593 # 1ta8A.568.264 read from T0547.t06.many.frag # found chain 1ta8A in training set T0547 568 :HAIMDILNE 1ta8A 265 :DEVWAYIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107594 # 1wbeA.568.173 read from T0547.t06.many.frag # found chain 1wbeA in training set T0547 568 :HAIMDILNE 1wbeA 174 :EECLEKVRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107595 # 1u7kA.568.34 read from T0547.t06.many.frag # found chain 1u7kA in template set T0547 568 :HAIMDILNE 1u7kA 35 :GKLTALIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=107596 # 1ng6A.568.97 read from T0547.t06.many.frag # found chain 1ng6A in training set T0547 568 :HAIMDILNE 1ng6A 98 :EELRTIVNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107597 # 1tv8A.568.298 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 568 :HAIMDILNE 1tv8A 299 :EELKEQFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107598 # 1v74B.568.71 read from T0547.t06.many.frag # found chain 1v74B in template set T0547 568 :HAIMDILNE 1v74B 72 :NGLKVEVRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107599 # 1q7zA.568.541 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 568 :HAIMDILNE 1q7zA 542 :ETLMKTLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107600 # 1w2yA.568.215 read from T0547.t06.many.frag # found chain 1w2yA in training set T0547 568 :HAIMDILNE 1w2yA 216 :DTIYKKLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107601 # 1ka8A.568.56 read from T0547.t06.many.frag # found chain 1ka8A in template set T0547 568 :HAIMDILNE 1ka8A 57 :KMFGLGLPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107602 # 1h54A.568.271 read from T0547.t06.many.frag # found chain 1h54A in template set T0547 568 :HAIMDILNE 1h54A 272 :ESLTAAMHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107603 # 1svsA.568.295 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 568 :HAIMDILNE 1svsA 297 :EEAAAYIQC Number of specific fragments extracted= 1 number of extra gaps= 0 total=107604 # 1pdo.568.110 read from T0547.t06.many.frag # found chain 1pdo in training set T0547 568 :HAIMDILNE 1pdo 112 :DELVALAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107605 # 2akaB.568.243 read from T0547.t06.many.frag # found chain 2akaB in template set T0547 568 :HAIMDILNE 2akaB 249 :TAALAAERK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107606 # 1dk0A.568.144 read from T0547.t06.many.frag # found chain 1dk0A in training set T0547 568 :HAIMDILNE 1dk0A 145 :GALETALNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107607 # 1fc3A.568.62 read from T0547.t06.many.frag # found chain 1fc3A in template set T0547 568 :HAIMDILNE 1fc3A 202 :SRVERAIRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=107608 # 1zpvA.568.59 read from T0547.t06.many.frag # found chain 1zpvA in template set T0547 568 :HAIMDILNE 1zpvA 57 :TYLRNEFEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107609 # 1no1A.568.42 read from T0547.t06.many.frag # found chain 1no1A in template set T0547 568 :HAIMDILNE 1no1A 43 :EEIMNNLTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107610 # 1v4vA.568.321 read from T0547.t06.many.frag # found chain 1v4vA in training set T0547 568 :HAIMDILNE 1v4vA 322 :EGVYRVVKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107611 # 1xrjA.568.159 read from T0547.t06.many.frag # found chain 1xrjA in template set T0547 568 :HAIMDILNE 1xrjA 160 :DTRLSRRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107612 # 2igd.568.28 read from T0547.t06.many.frag # found chain 2igd in training set T0547 568 :HAIMDILNE 2igd 29 :ETAEKAFKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107613 # 1ks9A.568.224 read from T0547.t06.many.frag # found chain 1ks9A in training set T0547 568 :HAIMDILNE 1ks9A 225 :EDLRDYVMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107614 # 1unnC.568.73 read from T0547.t06.many.frag # found chain 1unnC in template set T0547 568 :HAIMDILNE 1unnC 310 :ADLIATARK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107615 # 1omhA.568.274 read from T0547.t06.many.frag # found chain 1omhA in template set T0547 568 :HAIMDILNE 1omhA 275 :EALRAEWQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107616 # 1uvjA.568.564 read from T0547.t06.many.frag # found chain 1uvjA in template set T0547 568 :HAIMDILNE 1uvjA 565 :SDVLEAIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=107617 # 1f9yA.568.66 read from T0547.t06.many.frag # found chain 1f9yA in training set T0547 568 :HAIMDILNE 1f9yA 67 :EELLNHTQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107618 # 2a84A.569.229 read from T0547.t06.many.frag # found chain 2a84A in training set T0547 569 :AIMDILNER 2a84A 230 :AALDAARAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107619 # 1e0tA.569.427 read from T0547.t06.many.frag # found chain 1e0tA in template set T0547 569 :AIMDILNER 1e0tA 428 :DFYRLGKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107620 # 1r9jA.569.645 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 569 :AIMDILNER 1r9jA 644 :EVVRTGREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107621 # 1u84A.569.48 read from T0547.t06.many.frag # found chain 1u84A in training set T0547 569 :AIMDILNER 1u84A 46 :TLAARIQSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107622 # 1ng6A.569.98 read from T0547.t06.many.frag # found chain 1ng6A in training set T0547 569 :AIMDILNER 1ng6A 99 :ELRTIVNET Number of specific fragments extracted= 1 number of extra gaps= 0 total=107623 # 1ta8A.569.265 read from T0547.t06.many.frag # found chain 1ta8A in training set T0547 569 :AIMDILNER 1ta8A 266 :EVWAYIEEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=107624 # 1pswA.569.333 read from T0547.t06.many.frag # found chain 1pswA in template set T0547 569 :AIMDILNER 1pswA 334 :RVLEELNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107625 # 1ka8A.569.57 read from T0547.t06.many.frag # found chain 1ka8A in template set T0547 569 :AIMDILNER 1ka8A 58 :MFGLGLPVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=107626 # 1u7kA.569.35 read from T0547.t06.many.frag # found chain 1u7kA in template set T0547 569 :AIMDILNER 1u7kA 36 :KLTALIESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107627 # 1v74B.569.72 read from T0547.t06.many.frag # found chain 1v74B in template set T0547 569 :AIMDILNER 1v74B 73 :GLKVEVRSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107628 # 1q7zA.569.542 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 569 :AIMDILNER 1q7zA 543 :TLMKTLNAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107629 # 2igd.569.29 read from T0547.t06.many.frag # found chain 2igd in training set T0547 569 :AIMDILNER 2igd 30 :TAEKAFKQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=107630 # 1wbeA.569.174 read from T0547.t06.many.frag # found chain 1wbeA in training set T0547 569 :AIMDILNER 1wbeA 175 :ECLEKVRLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107631 # 2akaB.569.244 read from T0547.t06.many.frag # found chain 2akaB in template set T0547 569 :AIMDILNER 2akaB 250 :AALAAERKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107632 # 1h54A.569.272 read from T0547.t06.many.frag # found chain 1h54A in template set T0547 569 :AIMDILNER 1h54A 273 :SLTAAMHQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107633 # 1tv8A.569.299 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 569 :AIMDILNER 1tv8A 300 :ELKEQFKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107634 # 1svsA.569.296 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 569 :AIMDILNER 1svsA 298 :EAAAYIQCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107635 # 1dk0A.569.145 read from T0547.t06.many.frag # found chain 1dk0A in training set T0547 569 :AIMDILNER 1dk0A 146 :ALETALNGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107636 # 1w2yA.569.216 read from T0547.t06.many.frag # found chain 1w2yA in training set T0547 569 :AIMDILNER 1w2yA 217 :TIYKKLEEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=107637 # 1fc3A.569.63 read from T0547.t06.many.frag # found chain 1fc3A in template set T0547 569 :AIMDILNER 1fc3A 203 :RVERAIRHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107638 # 1mvlA.569.187 read from T0547.t06.many.frag # found chain 1mvlA in template set T0547 569 :AIMDILNER 1mvlA 188 :LIYSTVRLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107639 # 1omhA.569.275 read from T0547.t06.many.frag # found chain 1omhA in template set T0547 569 :AIMDILNER 1omhA 276 :ALRAEWQAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107640 # 1pdo.569.111 read from T0547.t06.many.frag # found chain 1pdo in training set T0547 569 :AIMDILNER 1pdo 113 :ELVALAVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=107641 # 1hlvA.569.98 read from T0547.t06.many.frag # found chain 1hlvA in template set T0547 569 :AIMDILNER 1hlvA 99 :ILKEKALRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107642 # 1ks9A.569.225 read from T0547.t06.many.frag # found chain 1ks9A in training set T0547 569 :AIMDILNER 1ks9A 226 :DLRDYVMQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107643 # 1g3kA.569.128 read from T0547.t06.many.frag # found chain 1g3kA in template set T0547 569 :AIMDILNER 1g3kA 129 :YALSAARAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107644 # 1zpvA.569.60 read from T0547.t06.many.frag # found chain 1zpvA in template set T0547 569 :AIMDILNER 1zpvA 58 :YLRNEFEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107645 # 1no1A.569.43 read from T0547.t06.many.frag # found chain 1no1A in template set T0547 569 :AIMDILNER 1no1A 44 :EIMNNLTDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=107646 # 1v4vA.569.322 read from T0547.t06.many.frag # found chain 1v4vA in training set T0547 569 :AIMDILNER 1v4vA 323 :GVYRVVKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107647 # 1unnC.569.74 read from T0547.t06.many.frag # found chain 1unnC in template set T0547 569 :AIMDILNER 1unnC 311 :DLIATARKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107648 # 2a84A.570.230 read from T0547.t06.many.frag # found chain 2a84A in training set T0547 570 :IMDILNERI 2a84A 231 :ALDAARAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107649 # 1u84A.570.49 read from T0547.t06.many.frag # found chain 1u84A in training set T0547 570 :IMDILNERI 1u84A 47 :LAARIQSIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=107650 # 1e0tA.570.428 read from T0547.t06.many.frag # found chain 1e0tA in template set T0547 570 :IMDILNERI 1e0tA 429 :FYRLGKELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107651 # 1r9jA.570.646 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 570 :IMDILNERI 1r9jA 645 :VVRTGRELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107652 # 1ta8A.570.266 read from T0547.t06.many.frag # found chain 1ta8A in training set T0547 570 :IMDILNERI 1ta8A 267 :VWAYIEEYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=107653 # 1q7zA.570.543 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 570 :IMDILNERI 1q7zA 544 :LMKTLNATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107654 # 1u7kA.570.36 read from T0547.t06.many.frag # found chain 1u7kA in template set T0547 570 :IMDILNERI 1u7kA 37 :LTALIESVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107655 # 1ka8A.570.58 read from T0547.t06.many.frag # found chain 1ka8A in template set T0547 570 :IMDILNERI 1ka8A 59 :FGLGLPVML Number of specific fragments extracted= 1 number of extra gaps= 0 total=107656 # 1v74B.570.73 read from T0547.t06.many.frag # found chain 1v74B in template set T0547 570 :IMDILNERI 1v74B 74 :LKVEVRSIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107657 # 2igd.570.30 read from T0547.t06.many.frag # found chain 2igd in training set T0547 570 :IMDILNERI 2igd 31 :AEKAFKQYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107658 # 1pswA.570.334 read from T0547.t06.many.frag # found chain 1pswA in template set T0547 570 :IMDILNERI 1pswA 335 :VLEELNALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107659 # 1ng6A.570.99 read from T0547.t06.many.frag # found chain 1ng6A in training set T0547 570 :IMDILNERI 1ng6A 100 :LRTIVNETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107660 # 1svsA.570.297 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 570 :IMDILNERI 1svsA 299 :AAAYIQCQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107661 # 1h54A.570.273 read from T0547.t06.many.frag # found chain 1h54A in template set T0547 570 :IMDILNERI 1h54A 274 :LTAAMHQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107662 # 1tv8A.570.300 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 570 :IMDILNERI 1tv8A 301 :LKEQFKALW Number of specific fragments extracted= 1 number of extra gaps= 0 total=107663 # 1mvlA.570.188 read from T0547.t06.many.frag # found chain 1mvlA in template set T0547 570 :IMDILNERI 1mvlA 189 :IYSTVRLFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=107664 # 2akaB.570.245 read from T0547.t06.many.frag # found chain 2akaB in template set T0547 570 :IMDILNERI 2akaB 251 :ALAAERKFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107665 # 1g3kA.570.129 read from T0547.t06.many.frag # found chain 1g3kA in template set T0547 570 :IMDILNERI 1g3kA 130 :ALSAARALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107666 # 1wbeA.570.175 read from T0547.t06.many.frag # found chain 1wbeA in training set T0547 570 :IMDILNERI 1wbeA 176 :CLEKVRLFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107667 # 1hlvA.570.99 read from T0547.t06.many.frag # found chain 1hlvA in template set T0547 570 :IMDILNERI 1hlvA 100 :LKEKALRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107668 # 1omhA.570.276 read from T0547.t06.many.frag # found chain 1omhA in template set T0547 570 :IMDILNERI 1omhA 277 :LRAEWQATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107669 # 1pdo.570.112 read from T0547.t06.many.frag # found chain 1pdo in training set T0547 570 :IMDILNERI 1pdo 114 :LVALAVETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107670 # 1dk0A.570.146 read from T0547.t06.many.frag # found chain 1dk0A in training set T0547 570 :IMDILNERI 1dk0A 147 :LETALNGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107671 # 1pc6A.570.111 read from T0547.t06.many.frag # found chain 1pc6A in template set T0547 570 :IMDILNERI 1pc6A 112 :LLELIQAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107672 # 1zpvA.570.61 read from T0547.t06.many.frag # found chain 1zpvA in template set T0547 570 :IMDILNERI 1zpvA 59 :LRNEFEAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107673 # 1gx5A.570.480 read from T0547.t06.many.frag # found chain 1gx5A in template set T0547 570 :IMDILNERI 1gx5A 481 :EINRVASCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107674 # 1unnC.570.75 read from T0547.t06.many.frag # found chain 1unnC in template set T0547 570 :IMDILNERI 1unnC 312 :LIATARKTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=107675 # 1f9yA.570.68 read from T0547.t06.many.frag # found chain 1f9yA in training set T0547 570 :IMDILNERI 1f9yA 69 :LLNHTQRIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107676 # 1v4vA.570.323 read from T0547.t06.many.frag # found chain 1v4vA in training set T0547 570 :IMDILNERI 1v4vA 324 :VYRVVKGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107677 # 2bnxA.570.232 read from T0547.t06.many.frag # found chain 2bnxA in template set T0547 570 :IMDILNERI 2bnxA 363 :DFFDLKGRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107678 # 2a84A.571.231 read from T0547.t06.many.frag # found chain 2a84A in training set T0547 571 :MDILNERIS 2a84A 232 :LDAARAVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107679 # 1e0tA.571.429 read from T0547.t06.many.frag # found chain 1e0tA in template set T0547 571 :MDILNERIS 1e0tA 430 :YRLGKELAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107680 # 1ng6A.571.100 read from T0547.t06.many.frag # found chain 1ng6A in training set T0547 571 :MDILNERIS 1ng6A 101 :RTIVNETIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107681 # 1r9jA.571.647 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 571 :MDILNERIS 1r9jA 646 :VRTGRELAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107682 # 1u84A.571.50 read from T0547.t06.many.frag # found chain 1u84A in training set T0547 571 :MDILNERIS 1u84A 48 :AARIQSIYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107683 # 1ta8A.571.267 read from T0547.t06.many.frag # found chain 1ta8A in training set T0547 571 :MDILNERIS 1ta8A 268 :WAYIEEYHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107684 # 1ka8A.571.59 read from T0547.t06.many.frag # found chain 1ka8A in template set T0547 571 :MDILNERIS 1ka8A 60 :GLGLPVMLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107685 # 1q7zA.571.544 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 571 :MDILNERIS 1q7zA 545 :MKTLNATLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107686 # 2igd.571.31 read from T0547.t06.many.frag # found chain 2igd in training set T0547 571 :MDILNERIS 2igd 32 :EKAFKQYAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107687 # 1v74B.571.74 read from T0547.t06.many.frag # found chain 1v74B in template set T0547 571 :MDILNERIS 1v74B 75 :KVEVRSILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107688 # 1pswA.571.335 read from T0547.t06.many.frag # found chain 1pswA in template set T0547 571 :MDILNERIS 1pswA 336 :LEELNALLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107689 # 2akaB.571.246 read from T0547.t06.many.frag # found chain 2akaB in template set T0547 571 :MDILNERIS 2akaB 252 :LAAERKFFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107690 # 1h54A.571.274 read from T0547.t06.many.frag # found chain 1h54A in template set T0547 571 :MDILNERIS 1h54A 275 :TAAMHQLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107691 # 1u7kA.571.37 read from T0547.t06.many.frag # found chain 1u7kA in template set T0547 571 :MDILNERIS 1u7kA 38 :TALIESVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107692 # 1svsA.571.298 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 571 :MDILNERIS 1svsA 300 :AAYIQCQFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107693 # 1omhA.571.277 read from T0547.t06.many.frag # found chain 1omhA in template set T0547 571 :MDILNERIS 1omhA 278 :RAEWQATAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107694 # 1tv8A.571.301 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 571 :MDILNERIS 1tv8A 302 :KEQFKALWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107695 # 1hlvA.571.100 read from T0547.t06.many.frag # found chain 1hlvA in template set T0547 571 :MDILNERIS 1hlvA 101 :KEKALRIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107696 # 1g3kA.571.130 read from T0547.t06.many.frag # found chain 1g3kA in template set T0547 571 :MDILNERIS 1g3kA 131 :LSAARALVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107697 # 1pdo.571.113 read from T0547.t06.many.frag # found chain 1pdo in training set T0547 571 :MDILNERIS 1pdo 115 :VALAVETGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107698 # 1mvlA.571.189 read from T0547.t06.many.frag # found chain 1mvlA in template set T0547 571 :MDILNERIS 1mvlA 190 :YSTVRLFWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107699 # 1zpvA.571.62 read from T0547.t06.many.frag # found chain 1zpvA in template set T0547 571 :MDILNERIS 1zpvA 60 :RNEFEAFGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107700 # 1gx5A.571.481 read from T0547.t06.many.frag # found chain 1gx5A in template set T0547 571 :MDILNERIS 1gx5A 482 :INRVASCLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107701 # 1wbeA.571.176 read from T0547.t06.many.frag # found chain 1wbeA in training set T0547 571 :MDILNERIS 1wbeA 177 :LEKVRLFLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107702 # 1pc6A.571.112 read from T0547.t06.many.frag # found chain 1pc6A in template set T0547 571 :MDILNERIS 1pc6A 113 :LELIQAFGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107703 # 1dk0A.571.147 read from T0547.t06.many.frag # found chain 1dk0A in training set T0547 571 :MDILNERIS 1dk0A 148 :ETALNGILD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107704 # 1uvjA.571.567 read from T0547.t06.many.frag # found chain 1uvjA in template set T0547 571 :MDILNERIS 1uvjA 568 :LEAIERCWW Number of specific fragments extracted= 1 number of extra gaps= 0 total=107705 # 1w2yA.571.218 read from T0547.t06.many.frag # found chain 1w2yA in training set T0547 571 :MDILNERIS 1w2yA 219 :YKKLEECYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107706 # 1evlA.571.383 read from T0547.t06.many.frag # found chain 1evlA in training set T0547 571 :MDILNERIS 1evlA 625 :IEKLQQEIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107707 # 1nekA.571.459 read from T0547.t06.many.frag # found chain 1nekA in template set T0547 571 :MDILNERIS 1nekA 460 :RKALQECMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107708 # 2a84A.572.232 read from T0547.t06.many.frag # found chain 2a84A in training set T0547 572 :DILNERISN 2a84A 233 :DAARAVLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107709 # 1e0tA.572.430 read from T0547.t06.many.frag # found chain 1e0tA in template set T0547 572 :DILNERISN 1e0tA 431 :RLGKELALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107710 # 1ng6A.572.101 read from T0547.t06.many.frag # found chain 1ng6A in training set T0547 572 :DILNERISN 1ng6A 102 :TIVNETIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107711 # 1r9jA.572.648 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 572 :DILNERISN 1r9jA 647 :RTGRELAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107712 # 1u84A.572.51 read from T0547.t06.many.frag # found chain 1u84A in training set T0547 572 :DILNERISN 1u84A 49 :ARIQSIYEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107713 # 1ka8A.572.60 read from T0547.t06.many.frag # found chain 1ka8A in template set T0547 572 :DILNERISN 1ka8A 61 :LGLPVMLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107714 # 1ta8A.572.268 read from T0547.t06.many.frag # found chain 1ta8A in training set T0547 572 :DILNERISN 1ta8A 269 :AYIEEYHEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107715 # 1q7zA.572.545 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 572 :DILNERISN 1q7zA 546 :KTLNATLVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107716 # 2igd.572.32 read from T0547.t06.many.frag # found chain 2igd in training set T0547 572 :DILNERISN 2igd 33 :KAFKQYAND Number of specific fragments extracted= 1 number of extra gaps= 0 total=107717 # 1v74B.572.75 read from T0547.t06.many.frag # found chain 1v74B in template set T0547 572 :DILNERISN 1v74B 76 :VEVRSILEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107718 # 2akaB.572.247 read from T0547.t06.many.frag # found chain 2akaB in template set T0547 572 :DILNERISN 2akaB 253 :AAERKFFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107719 # 1h54A.572.275 read from T0547.t06.many.frag # found chain 1h54A in template set T0547 572 :DILNERISN 1h54A 276 :AAMHQLSDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107720 # 1omhA.572.278 read from T0547.t06.many.frag # found chain 1omhA in template set T0547 572 :DILNERISN 1omhA 279 :AEWQATAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107721 # 1svsA.572.299 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 572 :DILNERISN 1svsA 301 :AYIQCQFED Number of specific fragments extracted= 1 number of extra gaps= 0 total=107722 # 1hlvA.572.101 read from T0547.t06.many.frag # found chain 1hlvA in template set T0547 572 :DILNERISN 1hlvA 102 :EKALRIAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107723 # 1g3kA.572.131 read from T0547.t06.many.frag # found chain 1g3kA in template set T0547 572 :DILNERISN 1g3kA 132 :SAARALVEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107724 # 1u7kA.572.38 read from T0547.t06.many.frag # found chain 1u7kA in template set T0547 572 :DILNERISN 1u7kA 39 :ALIESVLTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107725 # 1tv8A.572.302 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 572 :DILNERISN 1tv8A 303 :EQFKALWQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107726 # 1gx5A.572.482 read from T0547.t06.many.frag # found chain 1gx5A in template set T0547 572 :DILNERISN 1gx5A 483 :NRVASCLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107727 # 1pc6A.572.113 read from T0547.t06.many.frag # found chain 1pc6A in template set T0547 572 :DILNERISN 1pc6A 114 :ELIQAFGTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107728 # 1mvlA.572.190 read from T0547.t06.many.frag # found chain 1mvlA in template set T0547 572 :DILNERISN 1mvlA 191 :STVRLFWES Number of specific fragments extracted= 1 number of extra gaps= 0 total=107729 # 1zpvA.572.63 read from T0547.t06.many.frag # found chain 1zpvA in template set T0547 572 :DILNERISN 1zpvA 61 :NEFEAFGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107730 # 1uvjA.572.568 read from T0547.t06.many.frag # found chain 1uvjA in template set T0547 572 :DILNERISN 1uvjA 569 :EAIERCWWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107731 # 1pdo.572.114 read from T0547.t06.many.frag # found chain 1pdo in training set T0547 572 :DILNERISN 1pdo 116 :ALAVETGRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107732 # 1unnC.572.77 read from T0547.t06.many.frag # found chain 1unnC in template set T0547 572 :DILNERISN 1unnC 314 :ATARKTWDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107733 # 1pswA.572.336 read from T0547.t06.many.frag # found chain 1pswA in template set T0547 572 :DILNERISN 1pswA 337 :EELNALLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107734 # 1b7yA.572.291 read from T0547.t06.many.frag # found chain 1b7yA in template set T0547 572 :DILNERISN 1b7yA 292 :QAVDAYRER Number of specific fragments extracted= 1 number of extra gaps= 0 total=107735 # 1wzdA.572.173 read from T0547.t06.many.frag # found chain 1wzdA in training set T0547 572 :DILNERISN 1wzdA 174 :DEYREKLNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107736 # 1nekA.572.460 read from T0547.t06.many.frag # found chain 1nekA in template set T0547 572 :DILNERISN 1nekA 461 :KALQECMQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=107737 # 1f9yA.572.70 read from T0547.t06.many.frag # found chain 1f9yA in training set T0547 572 :DILNERISN 1f9yA 71 :NHTQRIELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107738 # 2a84A.573.233 read from T0547.t06.many.frag # found chain 2a84A in training set T0547 573 :ILNERISNS 2a84A 234 :AARAVLDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107739 # 1e0tA.573.431 read from T0547.t06.many.frag # found chain 1e0tA in template set T0547 573 :ILNERISNS 1e0tA 432 :LGKELALQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107740 # 1ng6A.573.102 read from T0547.t06.many.frag # found chain 1ng6A in training set T0547 573 :ILNERISNS 1ng6A 103 :IVNETIAEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107741 # 1ka8A.573.61 read from T0547.t06.many.frag # found chain 1ka8A in template set T0547 573 :ILNERISNS 1ka8A 62 :GLPVMLKEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=107742 # 2igd.573.33 read from T0547.t06.many.frag # found chain 2igd in training set T0547 573 :ILNERISNS 2igd 34 :AFKQYANDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107743 # 1q7zA.573.546 read from T0547.t06.many.frag # found chain 1q7zA in training set T0547 573 :ILNERISNS 1q7zA 547 :TLNATLVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107744 # 1ta8A.573.269 read from T0547.t06.many.frag # found chain 1ta8A in training set T0547 573 :ILNERISNS 1ta8A 270 :YIEEYHEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107745 # 1r9jA.573.649 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 573 :ILNERISNS 1r9jA 648 :TGRELAKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107746 # 2akaB.573.248 read from T0547.t06.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)N580 (2akaB)S261 because G (3-10) conformation "forbidden" or filtered. T0547 573 :ILNERIS 2akaB 254 :AERKFFL T0547 581 :S 2akaB 262 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=107748 # 1v74B.573.76 read from T0547.t06.many.frag # found chain 1v74B in template set T0547 573 :ILNERISNS 1v74B 77 :EVRSILEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107749 # 1svsA.573.300 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 573 :ILNERISNS 1svsA 302 :YIQCQFEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107750 # 1u84A.573.52 read from T0547.t06.many.frag # found chain 1u84A in training set T0547 573 :ILNERISNS 1u84A 50 :RIQSIYEFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107751 # 1h54A.573.276 read from T0547.t06.many.frag # found chain 1h54A in template set T0547 573 :ILNERISNS 1h54A 277 :AMHQLSDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107752 # 1omhA.573.279 read from T0547.t06.many.frag # found chain 1omhA in template set T0547 573 :ILNERISNS 1omhA 280 :EWQATAKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107753 # 1hlvA.573.102 read from T0547.t06.many.frag # found chain 1hlvA in template set T0547 573 :ILNERISNS 1hlvA 103 :KALRIAEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107754 # 1g3kA.573.132 read from T0547.t06.many.frag # found chain 1g3kA in template set Warning: unaligning (T0547)S581 (1g3kA)T141 because Y (epsilon') conformation "forbidden" or filtered. T0547 573 :ILNERISN 1g3kA 133 :AARALVEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=107755 # 1gx5A.573.483 read from T0547.t06.many.frag # found chain 1gx5A in template set T0547 573 :ILNERISNS 1gx5A 484 :RVASCLRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107756 # 1pc6A.573.114 read from T0547.t06.many.frag # found chain 1pc6A in template set T0547 573 :ILNERISNS 1pc6A 115 :LIQAFGTER Number of specific fragments extracted= 1 number of extra gaps= 0 total=107757 # 1tv8A.573.303 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 573 :ILNERISNS 1tv8A 304 :QFKALWQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107758 # 1hbkA.573.9 read from T0547.t06.many.frag # found chain 1hbkA in template set T0547 573 :ILNERISNS 1hbkA 7 :ECVSFINGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107759 # 1pdo.573.115 read from T0547.t06.many.frag # found chain 1pdo in training set T0547 573 :ILNERISNS 1pdo 117 :LAVETGREG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107760 # 1u7kA.573.39 read from T0547.t06.many.frag # found chain 1u7kA in template set T0547 573 :ILNERISNS 1u7kA 40 :LIESVLTTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=107761 # 1ks9A.573.229 read from T0547.t06.many.frag # found chain 1ks9A in training set T0547 573 :ILNERISNS 1ks9A 230 :YVMQVIDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107762 # 1mvlA.573.191 read from T0547.t06.many.frag # found chain 1mvlA in template set Warning: unaligning (T0547)S581 because last residue in template chain is (1mvlA)Q200 T0547 573 :ILNERISN 1mvlA 192 :TVRLFWES Number of specific fragments extracted= 1 number of extra gaps= 0 total=107763 # 1hyp.573.42 read from T0547.t06.many.frag # found chain 1hyp in training set T0547 573 :ILNERISNS 1hyp 43 :CLCIQLRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107764 # 1bazA.573.20 read from T0547.t06.many.frag # found chain 1bazA in template set T0547 573 :ILNERISNS 1bazA 21 :LVRKVAEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107765 # 1nekA.573.461 read from T0547.t06.many.frag # found chain 1nekA in template set T0547 573 :ILNERISNS 1nekA 462 :ALQECMQHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107766 # 1zpvA.573.64 read from T0547.t06.many.frag # found chain 1zpvA in template set T0547 573 :ILNERISNS 1zpvA 62 :EFEAFGQTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107767 # 1wzdA.573.174 read from T0547.t06.many.frag # found chain 1wzdA in training set Warning: unaligning (T0547)N580 (1wzdA)N182 because G (3-10) conformation "forbidden" or filtered. T0547 573 :ILNERIS 1wzdA 175 :EYREKLN T0547 581 :S 1wzdA 183 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=107769 # 1b7yA.573.292 read from T0547.t06.many.frag # found chain 1b7yA in template set T0547 573 :ILNERISNS 1b7yA 293 :AVDAYRERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107770 # 1ng6A.574.103 read from T0547.t06.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)K582 (1ng6A)G112 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1ng6A 104 :VNETIAEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=107771 # 2a84A.574.234 read from T0547.t06.many.frag # found chain 2a84A in training set T0547 574 :LNERISNSK 2a84A 235 :ARAVLDAAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=107772 # 2akaB.574.249 read from T0547.t06.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)N580 (2akaB)S261 because G (3-10) conformation "forbidden" or filtered. T0547 574 :LNERIS 2akaB 255 :ERKFFL T0547 581 :SK 2akaB 262 :HP Number of specific fragments extracted= 2 number of extra gaps= 1 total=107774 # 2igd.574.34 read from T0547.t06.many.frag # found chain 2igd in training set T0547 574 :LNERISNSK 2igd 35 :FKQYANDNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107775 # 1h54A.574.277 read from T0547.t06.many.frag # found chain 1h54A in template set T0547 574 :LNERISNSK 1h54A 278 :MHQLSDKVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107776 # 1ka8A.574.62 read from T0547.t06.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)K582 (1ka8A)G71 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1ka8A 63 :LPVMLKEY Number of specific fragments extracted= 1 number of extra gaps= 1 total=107777 # 1g3kA.574.133 read from T0547.t06.many.frag # found chain 1g3kA in template set Warning: unaligning (T0547)S581 (1g3kA)T141 because Y (epsilon') conformation "forbidden" or filtered. T0547 574 :LNERISN 1g3kA 134 :ARALVEN T0547 582 :K 1g3kA 142 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=107779 # 1e0tA.574.432 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)K582 (1e0tA)G441 because T (delta_L) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1e0tA 433 :GKELALQS Number of specific fragments extracted= 1 number of extra gaps= 1 total=107780 # 1hlvA.574.103 read from T0547.t06.many.frag # found chain 1hlvA in template set Warning: unaligning (T0547)K582 (1hlvA)G112 because T (delta_L) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1hlvA 104 :ALRIAEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=107781 # 1gx5A.574.484 read from T0547.t06.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)K582 (1gx5A)G493 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1gx5A 485 :VASCLRKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=107782 # 1omhA.574.280 read from T0547.t06.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)K582 (1omhA)G289 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1omhA 281 :WQATAKEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=107783 # 1q7zA.574.547 read from T0547.t06.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)K582 (1q7zA)E556 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1q7zA 548 :LNATLVIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=107784 # 1ta8A.574.270 read from T0547.t06.many.frag # found chain 1ta8A in training set T0547 574 :LNERISNSK 1ta8A 271 :IEEYHEKRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107785 # 1v74B.574.77 read from T0547.t06.many.frag # found chain 1v74B in template set T0547 574 :LNERISNSK 1v74B 78 :VRSILEKFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107786 # 1svsA.574.301 read from T0547.t06.many.frag # found chain 1svsA in training set Warning: unaligning (T0547)K582 (1svsA)N311 because P (beta_P) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1svsA 303 :IQCQFEDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=107787 # 1tfr.574.270 read from T0547.t06.many.frag # found chain 1tfr in template set Warning: unaligning (T0547)N580 (1tfr)S277 because G (3-10) conformation "forbidden" or filtered. T0547 574 :LNERIS 1tfr 271 :IVNYYN T0547 581 :SK 1tfr 278 :YK Number of specific fragments extracted= 2 number of extra gaps= 1 total=107789 # 1cf7B.574.18 read from T0547.t06.many.frag # found chain 1cf7B in template set T0547 574 :LNERISNSK 1cf7B 78 :VCEKVQRKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107790 # 1pc6A.574.115 read from T0547.t06.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)K582 (1pc6A)G124 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1pc6A 116 :IQAFGTER Number of specific fragments extracted= 1 number of extra gaps= 1 total=107791 # 1tv8A.574.304 read from T0547.t06.many.frag # found chain 1tv8A in template set Warning: unaligning (T0547)N580 (1tv8A)I311 because G (3-10) conformation "forbidden" or filtered. T0547 574 :LNERIS 1tv8A 305 :FKALWQ T0547 581 :SK 1tv8A 312 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=107793 # 1hyp.574.43 read from T0547.t06.many.frag # found chain 1hyp in training set Warning: unaligning (T0547)K582 (1hyp)G52 because T (delta_L) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1hyp 44 :LCIQLRAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=107794 # 1bh9B.574.56 read from T0547.t06.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)S581 (1bh9B)W176 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1bh9B)G177 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISN 1bh9B 169 :ALDVCEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=107795 # 1bazA.574.21 read from T0547.t06.many.frag # found chain 1bazA in template set Warning: unaligning (T0547)S581 (1bazA)N29 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1bazA)G30 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISN 1bazA 22 :VRKVAEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=107796 # 1r9jA.574.650 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 574 :LNERISNSK 1r9jA 649 :GRELAKRFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=107797 # 2lisA.574.68 read from T0547.t06.many.frag # found chain 2lisA in training set T0547 574 :LNERISNSK 2lisA 69 :INKKIDALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107798 # 1hbkA.574.10 read from T0547.t06.many.frag # found chain 1hbkA in template set T0547 574 :LNERISNSK 1hbkA 8 :CVSFINGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=107799 # 1dk0A.574.150 read from T0547.t06.many.frag # found chain 1dk0A in training set Warning: unaligning (T0547)K582 (1dk0A)G159 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1dk0A 151 :LNGILDDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=107800 # 1in0A.574.109 read from T0547.t06.many.frag # found chain 1in0A in template set Warning: unaligning (T0547)K582 (1in0A)K118 because T (delta_L) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1in0A 110 :ITKLVKDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=107801 # 1qrvA.574.37 read from T0547.t06.many.frag # found chain 1qrvA in template set T0547 574 :LNERISNSK 1qrvA 39 :GGELWRAMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107802 # 1b7yA.574.293 read from T0547.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0547)S581 (1b7yA)L301 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (1b7yA)G302 because T (delta_L) conformation "forbidden" or filtered. T0547 574 :LNERISN 1b7yA 294 :VDAYRER Number of specific fragments extracted= 1 number of extra gaps= 1 total=107803 # 1u7kA.574.40 read from T0547.t06.many.frag # found chain 1u7kA in template set Warning: unaligning (T0547)K582 (1u7kA)Q49 because L (left) conformation "forbidden" or filtered. T0547 574 :LNERISNS 1u7kA 41 :IESVLTTH Number of specific fragments extracted= 1 number of extra gaps= 1 total=107804 # 2a84A.575.235 read from T0547.t06.many.frag # found chain 2a84A in training set T0547 575 :NERISNSKL 2a84A 236 :RAVLDAAPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=107805 # 1ng6A.575.104 read from T0547.t06.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)K582 (1ng6A)G112 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1ng6A 105 :NETIAEV T0547 583 :L 1ng6A 113 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=107807 # 1e0tA.575.433 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)K582 (1e0tA)G441 because T (delta_L) conformation "forbidden" or filtered. T0547 575 :NERISNS 1e0tA 434 :KELALQS T0547 583 :L 1e0tA 442 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=107809 # 2igd.575.35 read from T0547.t06.many.frag # found chain 2igd in training set Warning: unaligning (T0547)K582 (2igd)G43 because T (delta_L) conformation "forbidden" or filtered. T0547 575 :NERISNS 2igd 36 :KQYANDN T0547 583 :L 2igd 44 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=107811 # 1ka8A.575.63 read from T0547.t06.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)K582 (1ka8A)G71 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1ka8A 64 :PVMLKEY T0547 583 :L 1ka8A 72 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=107813 # 1g3kA.575.134 read from T0547.t06.many.frag # found chain 1g3kA in template set Warning: unaligning (T0547)N580 (1g3kA)N140 because G (3-10) conformation "forbidden" or filtered. T0547 575 :NERIS 1g3kA 135 :RALVE T0547 581 :SKL 1g3kA 141 :TEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=107815 # 2akaB.575.250 read from T0547.t06.many.frag # found chain 2akaB in template set T0547 575 :NERISNSKL 2akaB 256 :RKFFLSHPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107816 # 1q7zA.575.548 read from T0547.t06.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)K582 (1q7zA)E556 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1q7zA 549 :NATLVIL T0547 583 :L 1q7zA 557 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=107818 # 1bazA.575.22 read from T0547.t06.many.frag # found chain 1bazA in template set T0547 575 :NERISNSKL 1bazA 23 :RKVAEENGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107819 # 1h54A.575.278 read from T0547.t06.many.frag # found chain 1h54A in template set T0547 575 :NERISNSKL 1h54A 279 :HQLSDKVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107820 # 1omhA.575.281 read from T0547.t06.many.frag # found chain 1omhA in template set T0547 575 :NERISNSKL 1omhA 282 :QATAKELGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107821 # 1gx5A.575.485 read from T0547.t06.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)K582 (1gx5A)G493 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1gx5A 486 :ASCLRKL T0547 583 :L 1gx5A 494 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=107823 # 1tfr.575.271 read from T0547.t06.many.frag # found chain 1tfr in template set T0547 575 :NERISNSKL 1tfr 272 :VNYYNSYKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107824 # 1pc6A.575.116 read from T0547.t06.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)K582 (1pc6A)G124 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1pc6A 117 :QAFGTER T0547 583 :L 1pc6A 125 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=107826 # 1v74B.575.78 read from T0547.t06.many.frag # found chain 1v74B in template set Warning: unaligning (T0547)L583 because last residue in template chain is (1v74B)L87 T0547 575 :NERISNSK 1v74B 79 :RSILEKFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107827 # 1ta8A.575.271 read from T0547.t06.many.frag # found chain 1ta8A in training set Warning: unaligning (T0547)N580 (1ta8A)K277 because G (3-10) conformation "forbidden" or filtered. T0547 575 :NERIS 1ta8A 272 :EEYHE T0547 581 :SKL 1ta8A 278 :RST Number of specific fragments extracted= 2 number of extra gaps= 1 total=107829 # 1hlvA.575.104 read from T0547.t06.many.frag # found chain 1hlvA in template set Warning: unaligning (T0547)K582 (1hlvA)G112 because T (delta_L) conformation "forbidden" or filtered. T0547 575 :NERISNS 1hlvA 105 :LRIAEEL T0547 583 :L 1hlvA 113 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=107831 # 1cf7B.575.19 read from T0547.t06.many.frag # found chain 1cf7B in template set Warning: unaligning (T0547)K582 (1cf7B)G86 because T (delta_L) conformation "forbidden" or filtered. T0547 575 :NERISNS 1cf7B 79 :CEKVQRK T0547 583 :L 1cf7B 87 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=107833 # 1hyp.575.44 read from T0547.t06.many.frag # found chain 1hyp in training set T0547 575 :NERISNSKL 1hyp 45 :CIQLRALGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107834 # 1fo8A.575.256 read from T0547.t06.many.frag # found chain 1fo8A in training set Warning: unaligning (T0547)S581 (1fo8A)A367 because P (beta_P) conformation "forbidden" or filtered. T0547 575 :NERISN 1fo8A 361 :LARVYG T0547 582 :KL 1fo8A 368 :PQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=107836 # 1bh9B.575.57 read from T0547.t06.many.frag # found chain 1bh9B in template set Warning: unaligning (T0547)K582 (1bh9B)G177 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1bh9B 170 :LDVCEKW T0547 583 :L 1bh9B 178 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=107838 # 1dzkA.575.132 read from T0547.t06.many.frag # found chain 1dzkA in training set T0547 575 :NERISNSKL 1dzkA 133 :KEVTRENGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107839 # 1q79A.575.467 read from T0547.t06.many.frag # found chain 1q79A in template set Warning: unaligning (T0547)K582 (1q79A)K475 because L (left) conformation "forbidden" or filtered. T0547 575 :NERISNS 1q79A 468 :YRQAINS T0547 583 :L 1q79A 476 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=107841 # 1b7yA.575.294 read from T0547.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0547)K582 (1b7yA)G302 because T (delta_L) conformation "forbidden" or filtered. T0547 575 :NERISNS 1b7yA 295 :DAYRERL T0547 583 :L 1b7yA 303 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=107843 # 1svsA.575.302 read from T0547.t06.many.frag # found chain 1svsA in training set T0547 575 :NERISNSKL 1svsA 304 :QCQFEDLNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107844 # 1tv8A.575.305 read from T0547.t06.many.frag # found chain 1tv8A in template set T0547 575 :NERISNSKL 1tv8A 306 :KALWQIRDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107845 # 1yqhA.575.30 read from T0547.t06.many.frag # found chain 1yqhA in training set Warning: unaligning (T0547)K582 (1yqhA)G35 because T (delta_L) conformation "forbidden" or filtered. T0547 575 :NERISNS 1yqhA 28 :IEVVQQS T0547 583 :L 1yqhA 36 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=107847 # 1r9jA.575.651 read from T0547.t06.many.frag # found chain 1r9jA in template set T0547 575 :NERISNSKL 1r9jA 650 :RELAKRFPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107848 # 1vr8A.575.133 read from T0547.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0547)L583 because last residue in template chain is (1vr8A)Q154 T0547 575 :NERISNSK 1vr8A 146 :YRVYEEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107849 # 2lisA.575.69 read from T0547.t06.many.frag # found chain 2lisA in training set Warning: unaligning (T0547)L583 (2lisA)R78 because Y (epsilon') conformation "forbidden" or filtered. T0547 575 :NERISNSK 2lisA 70 :NKKIDALG Number of specific fragments extracted= 1 number of extra gaps= 1 total=107850 # 1bazA.576.23 read from T0547.t06.many.frag # found chain 1bazA in template set Warning: unaligning (T0547)K582 (1bazA)G30 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1bazA 24 :KVAEEN T0547 583 :LV 1bazA 31 :RS Number of specific fragments extracted= 2 number of extra gaps= 1 total=107852 # 1ng6A.576.105 read from T0547.t06.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)K582 (1ng6A)G112 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1ng6A 106 :ETIAEV T0547 583 :LV 1ng6A 113 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=107854 # 1tfr.576.272 read from T0547.t06.many.frag # found chain 1tfr in template set T0547 576 :ERISNSKLV 1tfr 273 :NYYNSYKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=107855 # 1gx5A.576.486 read from T0547.t06.many.frag # found chain 1gx5A in template set T0547 576 :ERISNSKLV 1gx5A 487 :SCLRKLGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=107856 # 1kxu.576.266 read from T0547.t06.many.frag # found chain 1kxu in template set T0547 576 :ERISNSKLV 1kxu 257 :NLVKKYEPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=107857 # 1q7zA.576.549 read from T0547.t06.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)K582 (1q7zA)E556 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1q7zA 550 :ATLVIL T0547 583 :LV 1q7zA 557 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=107859 # 1e0tA.576.434 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)K582 (1e0tA)G441 because T (delta_L) conformation "forbidden" or filtered. T0547 576 :ERISNS 1e0tA 435 :ELALQS T0547 583 :LV 1e0tA 442 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=107861 # 2cpgA.576.18 read from T0547.t06.many.frag # found chain 2cpgA in training set Warning: unaligning (T0547)S581 (2cpgA)M24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (2cpgA)G25 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISN 2cpgA 19 :KMARE T0547 583 :LV 2cpgA 26 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=107863 # 2a84A.576.236 read from T0547.t06.many.frag # found chain 2a84A in training set T0547 576 :ERISNSKLV 2a84A 237 :AVLDAAPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=107864 # 2igd.576.36 read from T0547.t06.many.frag # found chain 2igd in training set Warning: unaligning (T0547)S581 (2igd)N42 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K582 (2igd)G43 because T (delta_L) conformation "forbidden" or filtered. T0547 576 :ERISN 2igd 37 :QYAND T0547 583 :LV 2igd 44 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=107866 # 1h54A.576.279 read from T0547.t06.many.frag # found chain 1h54A in template set T0547 576 :ERISNSKLV 1h54A 280 :QLSDKVAQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107867 # 1qc7A.576.55 read from T0547.t06.many.frag # found chain 1qc7A in template set Warning: unaligning (T0547)K582 (1qc7A)G296 because S (epsilon) conformation "forbidden" or filtered. T0547 576 :ERISNS 1qc7A 290 :DELEYM T0547 583 :LV 1qc7A 297 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=107869 # 1cf7B.576.20 read from T0547.t06.many.frag # found chain 1cf7B in template set T0547 576 :ERISNSKLV 1cf7B 80 :EKVQRKGTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107870 # 1g3kA.576.135 read from T0547.t06.many.frag # found chain 1g3kA in template set Warning: unaligning (T0547)S581 (1g3kA)T141 because Y (epsilon') conformation "forbidden" or filtered. T0547 576 :ERISN 1g3kA 136 :ALVEN T0547 582 :KLV 1g3kA 142 :ELS Number of specific fragments extracted= 2 number of extra gaps= 1 total=107872 # 1l8aA.576.853 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 576 :ERISNSKLV 1l8aA 854 :GELAKRGEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=107873 # 1omhA.576.282 read from T0547.t06.many.frag # found chain 1omhA in template set Warning: unaligning (T0547)S581 (1omhA)L288 because G (3-10) conformation "forbidden" or filtered. T0547 576 :ERISN 1omhA 283 :ATAKE T0547 582 :KLV 1omhA 289 :GID Number of specific fragments extracted= 2 number of extra gaps= 1 total=107875 # 1q79A.576.468 read from T0547.t06.many.frag # found chain 1q79A in template set T0547 576 :ERISNSKLV 1q79A 469 :RQAINSKMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107876 # 1fo8A.576.257 read from T0547.t06.many.frag # found chain 1fo8A in training set Warning: unaligning (T0547)K582 (1fo8A)P368 because P (beta_P) conformation "forbidden" or filtered. T0547 576 :ERISNS 1fo8A 362 :ARVYGA T0547 583 :LV 1fo8A 369 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=107878 # 1dzkA.576.133 read from T0547.t06.many.frag # found chain 1dzkA in training set T0547 576 :ERISNSKLV 1dzkA 134 :EVTRENGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=107879 # 1vdkA.576.436 read from T0547.t06.many.frag # found chain 1vdkA in training set T0547 576 :ERISNSKLV 1vdkA 437 :QAALELGYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107880 # 1ka8A.576.64 read from T0547.t06.many.frag # found chain 1ka8A in template set Warning: unaligning (T0547)K582 (1ka8A)G71 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1ka8A 65 :VMLKEY T0547 583 :LV 1ka8A 72 :LN Number of specific fragments extracted= 2 number of extra gaps= 1 total=107882 # 1hyp.576.45 read from T0547.t06.many.frag # found chain 1hyp in training set Warning: unaligning (T0547)K582 (1hyp)G52 because T (delta_L) conformation "forbidden" or filtered. T0547 576 :ERISNS 1hyp 46 :IQLRAL T0547 583 :LV 1hyp 53 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=107884 # 1bh9B.576.58 read from T0547.t06.many.frag # found chain 1bh9B in template set T0547 576 :ERISNSKLV 1bh9B 171 :DVCEKWGEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=107885 # 2bl8A.576.59 read from T0547.t06.many.frag # found chain 2bl8A in training set T0547 576 :ERISNSKLV 2bl8A 60 :FTAYTNKIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107886 # 2akaB.576.251 read from T0547.t06.many.frag # found chain 2akaB in template set Warning: unaligning (T0547)N580 (2akaB)S261 because G (3-10) conformation "forbidden" or filtered. T0547 576 :ERIS 2akaB 257 :KFFL T0547 581 :SKLV 2akaB 262 :HPSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=107888 # 1m7gA.576.197 read from T0547.t06.many.frag # found chain 1m7gA in training set Warning: unaligning (T0547)K582 (1m7gA)G204 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1m7gA 198 :DYLDTK T0547 583 :LV 1m7gA 205 :YL Number of specific fragments extracted= 2 number of extra gaps= 1 total=107890 # 1pc6A.576.117 read from T0547.t06.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)K582 (1pc6A)G124 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1pc6A 118 :AFGTER T0547 583 :LV 1pc6A 125 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=107892 # 1b7yA.576.295 read from T0547.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0547)K582 (1b7yA)G302 because T (delta_L) conformation "forbidden" or filtered. T0547 576 :ERISNS 1b7yA 296 :AYRERL T0547 583 :LV 1b7yA 303 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=107894 # 1qrvA.576.39 read from T0547.t06.many.frag # found chain 1qrvA in template set T0547 576 :ERISNSKLV 1qrvA 41 :ELWRAMKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107895 # 1eyqA.576.115 read from T0547.t06.many.frag # found chain 1eyqA in template set Warning: unaligning (T0547)K582 (1eyqA)G122 because L (left) conformation "forbidden" or filtered. T0547 576 :ERISNS 1eyqA 116 :AHLKSV T0547 583 :LV 1eyqA 123 :TY Number of specific fragments extracted= 2 number of extra gaps= 1 total=107897 # 1ng6A.577.106 read from T0547.t06.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)K582 (1ng6A)G112 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNS 1ng6A 107 :TIAEV T0547 583 :LVN 1ng6A 113 :ASS Number of specific fragments extracted= 2 number of extra gaps= 1 total=107899 # 1l8aA.577.854 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 577 :RISNSKLVN 1l8aA 855 :ELAKRGEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=107900 # 1kxu.577.267 read from T0547.t06.many.frag # found chain 1kxu in template set T0547 577 :RISNSKLVN 1kxu 258 :LVKKYEPPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=107901 # 1vdkA.577.437 read from T0547.t06.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)K582 (1vdkA)G443 because T (delta_L) conformation "forbidden" or filtered. T0547 577 :RISNS 1vdkA 438 :AALEL T0547 583 :LVN 1vdkA 444 :YLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=107903 # 1bazA.577.24 read from T0547.t06.many.frag # found chain 1bazA in template set Warning: unaligning (T0547)K582 (1bazA)G30 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNS 1bazA 25 :VAEEN T0547 583 :LVN 1bazA 31 :RSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=107905 # 1cf7B.577.21 read from T0547.t06.many.frag # found chain 1cf7B in template set Warning: unaligning (T0547)K582 (1cf7B)G86 because T (delta_L) conformation "forbidden" or filtered. T0547 577 :RISNS 1cf7B 81 :KVQRK T0547 583 :LVN 1cf7B 87 :TTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=107907 # 1tfr.577.273 read from T0547.t06.many.frag # found chain 1tfr in template set T0547 577 :RISNSKLVN 1tfr 274 :YYNSYKLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=107908 # 2cpgA.577.19 read from T0547.t06.many.frag # found chain 2cpgA in training set Warning: unaligning (T0547)K582 (2cpgA)G25 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNS 2cpgA 20 :MAREM T0547 583 :LVN 2cpgA 26 :LSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=107910 # 1q7zA.577.550 read from T0547.t06.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)K582 (1q7zA)E556 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 because last residue in template chain is (1q7zA)E559 T0547 577 :RISNS 1q7zA 551 :TLVIL T0547 583 :LV 1q7zA 557 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=107912 # 1q79A.577.469 read from T0547.t06.many.frag # found chain 1q79A in template set Warning: unaligning (T0547)K582 (1q79A)K475 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNS 1q79A 470 :QAINS T0547 583 :LVN 1q79A 476 :MFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=107914 # 1gx5A.577.487 read from T0547.t06.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)K582 (1gx5A)G493 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNS 1gx5A 488 :CLRKL T0547 583 :LVN 1gx5A 494 :VPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=107916 # 1qc7A.577.56 read from T0547.t06.many.frag # found chain 1qc7A in template set Warning: unaligning (T0547)K582 (1qc7A)G296 because S (epsilon) conformation "forbidden" or filtered. T0547 577 :RISNS 1qc7A 291 :ELEYM T0547 583 :LVN 1qc7A 297 :PVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=107918 # 1h54A.577.280 read from T0547.t06.many.frag # found chain 1h54A in template set T0547 577 :RISNSKLVN 1h54A 281 :LSDKVAQSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107919 # 1eyqA.577.116 read from T0547.t06.many.frag # found chain 1eyqA in template set Warning: unaligning (T0547)K582 (1eyqA)G122 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNS 1eyqA 117 :HLKSV T0547 583 :LVN 1eyqA 123 :TYG Number of specific fragments extracted= 2 number of extra gaps= 1 total=107921 # 1hyp.577.46 read from T0547.t06.many.frag # found chain 1hyp in training set Warning: unaligning (T0547)K582 (1hyp)G52 because T (delta_L) conformation "forbidden" or filtered. T0547 577 :RISNS 1hyp 47 :QLRAL T0547 583 :LVN 1hyp 53 :ILN Number of specific fragments extracted= 2 number of extra gaps= 1 total=107923 # 1e0tA.577.435 read from T0547.t06.many.frag # found chain 1e0tA in template set Warning: unaligning (T0547)N585 (1e0tA)H444 because Y (epsilon') conformation "forbidden" or filtered. T0547 577 :RISNSKLV 1e0tA 436 :LALQSGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=107924 # 1guxA.577.163 read from T0547.t06.many.frag # found chain 1guxA in template set T0547 577 :RISNSKLVN 1guxA 535 :FIKAEGNLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107925 # 1xvhA.577.87 read from T0547.t06.many.frag # found chain 1xvhA in template set T0547 577 :RISNSKLVN 1xvhA 88 :AINGASDLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=107926 # 2d1pA.577.92 read from T0547.t06.many.frag # found chain 2d1pA in template set Warning: unaligning (T0547)N585 (2d1pA)D89 because P (beta_P) conformation "forbidden" or filtered. T0547 577 :RISNSKLV 2d1pA 81 :AALRRGVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=107927 # 2f6kA.577.280 read from T0547.t06.many.frag # found chain 2f6kA in template set T0547 577 :RISNSKLVN 2f6kA 281 :ALATTDLLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=107928 # 2igd.577.37 read from T0547.t06.many.frag # found chain 2igd in training set Warning: unaligning (T0547)K582 (2igd)G43 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (2igd)G46 because Y (epsilon') conformation "forbidden" or filtered. T0547 577 :RISNS 2igd 38 :YANDN T0547 583 :LV 2igd 44 :VD Number of specific fragments extracted= 2 number of extra gaps= 2 total=107930 # 2bl8A.577.60 read from T0547.t06.many.frag # found chain 2bl8A in training set T0547 577 :RISNSKLVN 2bl8A 61 :TAYTNKIRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=107931 # 1zy7A.577.379 read from T0547.t06.many.frag # found chain 1zy7A in training set Warning: unaligning (T0547)K582 (1zy7A)G683 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)V584 (1zy7A)G685 because S (epsilon) conformation "forbidden" or filtered. T0547 577 :RISNS 1zy7A 678 :AFIKA T0547 583 :L 1zy7A 684 :L T0547 585 :N 1zy7A 686 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=107934 # 1irqA.577.42 read from T0547.t06.many.frag # found chain 1irqA in training set Warning: unaligning (T0547)K582 (1irqA)G48 because T (delta_L) conformation "forbidden" or filtered. T0547 577 :RISNS 1irqA 43 :ETAKN T0547 583 :LVN 1irqA 49 :GNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=107936 # 1pc6A.577.118 read from T0547.t06.many.frag # found chain 1pc6A in template set Warning: unaligning (T0547)K582 (1pc6A)G124 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNS 1pc6A 119 :FGTER T0547 583 :LVN 1pc6A 125 :VKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=107938 # 1w6kA.577.299 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 577 :RISNSKLVN 1w6kA 300 :LNLYEHHHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107939 # 1fk5A.577.55 read from T0547.t06.many.frag # found chain 1fk5A in training set Warning: unaligning (T0547)L583 (1fk5A)G62 because L (left) conformation "forbidden" or filtered. T0547 577 :RISNSK 1fk5A 56 :AAAGVS T0547 584 :VN 1fk5A 63 :LN Number of specific fragments extracted= 2 number of extra gaps= 1 total=107941 # 1ug3A.577.315 read from T0547.t06.many.frag # found chain 1ug3A in template set T0547 577 :RISNSKLVN 1ug3A 1549 :ALYDEDVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107942 # 1dzkA.577.134 read from T0547.t06.many.frag # found chain 1dzkA in training set T0547 577 :RISNSKLVN 1dzkA 135 :VTRENGIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=107943 # 1m7gA.577.198 read from T0547.t06.many.frag # found chain 1m7gA in training set T0547 577 :RISNSKLVN 1m7gA 199 :YLDTKGYLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=107944 # 1l8aA.578.855 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 578 :ISNSKLVND 1l8aA 856 :LAKRGEIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107945 # 1kxu.578.268 read from T0547.t06.many.frag # found chain 1kxu in template set T0547 578 :ISNSKLVND 1kxu 259 :VKKYEPPRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107946 # 1ng6A.578.107 read from T0547.t06.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)K582 (1ng6A)G112 because L (left) conformation "forbidden" or filtered. T0547 578 :ISNS 1ng6A 108 :IAEV T0547 583 :LVND 1ng6A 113 :ASSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=107948 # 1vdkA.578.438 read from T0547.t06.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)V584 (1vdkA)L445 because Y (epsilon') conformation "forbidden" or filtered. T0547 578 :ISNSKL 1vdkA 439 :ALELGY T0547 585 :ND 1vdkA 446 :TE Number of specific fragments extracted= 2 number of extra gaps= 1 total=107950 # 1tfr.578.274 read from T0547.t06.many.frag # found chain 1tfr in template set Warning: unaligning (T0547)N580 (1tfr)S277 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)S581 (1tfr)Y278 because P (beta_P) conformation "forbidden" or filtered. T0547 578 :IS 1tfr 275 :YN T0547 582 :KLVND 1tfr 279 :KLPPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=107952 # 1qc7A.578.57 read from T0547.t06.many.frag # found chain 1qc7A in template set T0547 578 :ISNSKLVND 1qc7A 292 :LEYMGPVRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=107953 # 2cpgA.578.20 read from T0547.t06.many.frag # found chain 2cpgA in training set T0547 578 :ISNSKLVND 2cpgA 21 :AREMGLSKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=107954 # 1eyqA.578.117 read from T0547.t06.many.frag # found chain 1eyqA in template set T0547 578 :ISNSKLVND 1eyqA 118 :LKSVGTYGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=107955 # 1xvhA.578.88 read from T0547.t06.many.frag # found chain 1xvhA in template set Warning: unaligning (T0547)N580 (1xvhA)G91 because G (3-10) conformation "forbidden" or filtered. T0547 578 :IS 1xvhA 89 :IN T0547 581 :SKLVND 1xvhA 92 :ASDLNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=107957 # 2f6kA.578.281 read from T0547.t06.many.frag # found chain 2f6kA in template set Warning: unaligning (T0547)S581 (2f6kA)T285 because P (beta_P) conformation "forbidden" or filtered. T0547 578 :ISN 2f6kA 282 :LAT T0547 582 :KLVND 2f6kA 286 :DLLTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=107959 # 1cf7B.578.22 read from T0547.t06.many.frag # found chain 1cf7B in template set Warning: unaligning (T0547)K582 (1cf7B)G86 because T (delta_L) conformation "forbidden" or filtered. T0547 578 :ISNS 1cf7B 82 :VQRK T0547 583 :LVND 1cf7B 87 :TTSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=107961 # 1bazA.578.25 read from T0547.t06.many.frag # found chain 1bazA in template set Warning: unaligning (T0547)K582 (1bazA)G30 because L (left) conformation "forbidden" or filtered. T0547 578 :ISNS 1bazA 26 :AEEN T0547 583 :LVND 1bazA 31 :RSVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=107963 # 1guxA.578.164 read from T0547.t06.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)N585 (1guxA)T543 because P (beta_P) conformation "forbidden" or filtered. T0547 578 :ISNSKLV 1guxA 536 :IKAEGNL T0547 586 :D 1guxA 544 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=107965 # 1gx5A.578.488 read from T0547.t06.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)K582 (1gx5A)G493 because L (left) conformation "forbidden" or filtered. T0547 578 :ISNS 1gx5A 489 :LRKL T0547 583 :LVND 1gx5A 494 :VPPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=107967 # 1w6kA.578.300 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 578 :ISNSKLVND 1w6kA 301 :NLYEHHHSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107968 # 1u9lA.578.40 read from T0547.t06.many.frag # found chain 1u9lA in template set Warning: unaligning (T0547)S581 (1u9lA)I395 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L583 (1u9lA)G397 because T (delta_L) conformation "forbidden" or filtered. T0547 578 :ISN 1u9lA 392 :LLE T0547 582 :K 1u9lA 396 :E T0547 584 :VND 1u9lA 398 :LDE Number of specific fragments extracted= 3 number of extra gaps= 2 total=107971 # 1q79A.578.470 read from T0547.t06.many.frag # found chain 1q79A in template set Warning: unaligning (T0547)N585 (1q79A)E478 because E (beta_S) conformation "forbidden" or filtered. T0547 578 :ISNSKLV 1q79A 471 :AINSKMF T0547 586 :D 1q79A 479 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=107973 # 2d1pA.578.93 read from T0547.t06.many.frag # found chain 2d1pA in template set Warning: unaligning (T0547)K582 (2d1pA)G86 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (2d1pA)D89 because P (beta_P) conformation "forbidden" or filtered. T0547 578 :ISNS 2d1pA 82 :ALRR T0547 583 :LV 2d1pA 87 :VV T0547 586 :D 2d1pA 90 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=107976 # 1ug3A.578.316 read from T0547.t06.many.frag # found chain 1ug3A in template set Warning: unaligning (T0547)K582 (1ug3A)D1554 because L (left) conformation "forbidden" or filtered. T0547 578 :ISNS 1ug3A 1550 :LYDE T0547 583 :LVND 1ug3A 1555 :VVKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=107978 # 1u20A.578.188 read from T0547.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)K582 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0547 578 :ISNS 1u20A 189 :LRSL T0547 583 :LVND 1u20A 194 :LLRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=107980 # 1yn3A.578.41 read from T0547.t06.many.frag # found chain 1yn3A in training set Warning: unaligning (T0547)L583 (1yn3A)G203 because L (left) conformation "forbidden" or filtered. T0547 578 :ISNSK 1yn3A 198 :LESNR T0547 584 :VND 1yn3A 204 :ITD Number of specific fragments extracted= 2 number of extra gaps= 1 total=107982 3ygsP expands to /projects/compbio/data/pdb/3ygs.pdb.gz 3ygsP:# 3ygsP.578.29 read from T0547.t06.many.frag # adding 3ygsP to template set # found chain 3ygsP in template set Warning: unaligning (T0547)K582 (3ygsP)E34 because L (left) conformation "forbidden" or filtered. T0547 578 :ISNS 3ygsP 30 :LLSR T0547 583 :LVND 3ygsP 35 :LFRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=107984 # 1x2iA.578.47 read from T0547.t06.many.frag # found chain 1x2iA in training set Warning: unaligning (T0547)K582 (1x2iA)E49 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1x2iA)G52 because P (beta_P) conformation "forbidden" or filtered. T0547 578 :ISNS 1x2iA 45 :LMKV T0547 583 :LV 1x2iA 50 :GI T0547 586 :D 1x2iA 53 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=107987 # 1h54A.578.281 read from T0547.t06.many.frag # found chain 1h54A in template set T0547 578 :ISNSKLVND 1h54A 282 :SDKVAQSSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=107988 # 1q7zA.578.551 read from T0547.t06.many.frag # found chain 1q7zA in training set Warning: unaligning (T0547)N585 because last residue in template chain is (1q7zA)E559 T0547 578 :ISNSKLV 1q7zA 552 :LVILEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=107989 # 1fk5A.578.56 read from T0547.t06.many.frag # found chain 1fk5A in training set Warning: unaligning (T0547)L583 (1fk5A)G62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1fk5A)N64 because D (zeta) conformation "forbidden" or filtered. T0547 578 :ISNSK 1fk5A 57 :AAGVS T0547 584 :V 1fk5A 63 :L T0547 586 :D 1fk5A 65 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=107992 # 2bwbA.578.13 read from T0547.t06.many.frag # found chain 2bwbA in template set Warning: unaligning (T0547)K582 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0547 578 :ISNS 2bwbA 339 :LNDM T0547 583 :LVND 2bwbA 344 :FFDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=107994 # 2ahrA.578.182 read from T0547.t06.many.frag # found chain 2ahrA in template set T0547 578 :ISNSKLVND 2ahrA 180 :GVKNGIPKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=107995 # 1utg.578.41 read from T0547.t06.many.frag # found chain 1utg in training set T0547 578 :ISNSKLVND 1utg 42 :KKVLDSLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=107996 # 1ojhA.578.18 read from T0547.t06.many.frag # found chain 1ojhA in training set T0547 578 :ISNSKLVND 1ojhA 19 :ATQVQNMSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=107997 # 1l8aA.579.856 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)S581 (1l8aA)R859 because G (3-10) conformation "forbidden" or filtered. T0547 579 :SN 1l8aA 857 :AK T0547 582 :KLVNDK 1l8aA 860 :GEIDKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=107999 # 2f6kA.579.282 read from T0547.t06.many.frag # found chain 2f6kA in template set Warning: unaligning (T0547)N585 (2f6kA)T289 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNSKLV 2f6kA 283 :ATTDLL T0547 586 :DK 2f6kA 290 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108001 # 1xvhA.579.89 read from T0547.t06.many.frag # found chain 1xvhA in template set T0547 579 :SNSKLVNDK 1xvhA 90 :NGASDLNQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108002 # 1u9lA.579.41 read from T0547.t06.many.frag # found chain 1u9lA in template set T0547 579 :SNSKLVNDK 1u9lA 393 :LEIEGLDEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=108003 # 1x2iA.579.48 read from T0547.t06.many.frag # found chain 1x2iA in training set T0547 579 :SNSKLVNDK 1x2iA 46 :MKVEGIGEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108004 # 1guxA.579.165 read from T0547.t06.many.frag # found chain 1guxA in template set T0547 579 :SNSKLVNDK 1guxA 537 :KAEGNLTRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108005 # 1u20A.579.189 read from T0547.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)K582 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0547 579 :SNS 1u20A 190 :RSL T0547 583 :LVNDK 1u20A 194 :LLRED Number of specific fragments extracted= 2 number of extra gaps= 1 total=108007 # 1kxu.579.269 read from T0547.t06.many.frag # found chain 1kxu in template set Warning: unaligning (T0547)N585 (1kxu)R266 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNSKLV 1kxu 260 :KKYEPP T0547 586 :DK 1kxu 267 :SE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108009 # 1qc7A.579.58 read from T0547.t06.many.frag # found chain 1qc7A in template set Warning: unaligning (T0547)K582 (1qc7A)G296 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1qc7A)R299 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNS 1qc7A 293 :EYM T0547 583 :LV 1qc7A 297 :PV T0547 586 :DK 1qc7A 300 :LK Number of specific fragments extracted= 3 number of extra gaps= 2 total=108012 # 1vdkA.579.439 read from T0547.t06.many.frag # found chain 1vdkA in training set T0547 579 :SNSKLVNDK 1vdkA 440 :LELGYLTEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108013 # 1eyqA.579.118 read from T0547.t06.many.frag # found chain 1eyqA in template set Warning: unaligning (T0547)K582 (1eyqA)G122 because L (left) conformation "forbidden" or filtered. T0547 579 :SNS 1eyqA 119 :KSV T0547 583 :LVNDK 1eyqA 123 :TYGDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=108015 # 1w6kA.579.301 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 579 :SNSKLVNDK 1w6kA 302 :LYEHHHSAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=108016 # 1ug3A.579.317 read from T0547.t06.many.frag # found chain 1ug3A in template set T0547 579 :SNSKLVNDK 1ug3A 1551 :YDEDVVKED Number of specific fragments extracted= 1 number of extra gaps= 0 total=108017 # 1z3eB.579.43 read from T0547.t06.many.frag # found chain 1z3eB in training set T0547 579 :SNSKLVNDK 1z3eB 286 :MKVRNLGRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108018 # 1utg.579.42 read from T0547.t06.many.frag # found chain 1utg in training set T0547 579 :SNSKLVNDK 1utg 43 :KVLDSLPQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108019 # 2d1eA.579.191 read from T0547.t06.many.frag # found chain 2d1eA in training set Warning: unaligning (T0547)K582 (2d1eA)E195 because E (beta_S) conformation "forbidden" or filtered. T0547 579 :SNS 2d1eA 192 :IVA T0547 583 :LVNDK 2d1eA 196 :PLSEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=108021 # 1ng6A.579.108 read from T0547.t06.many.frag # found chain 1ng6A in training set Warning: unaligning (T0547)K582 (1ng6A)G112 because L (left) conformation "forbidden" or filtered. T0547 579 :SNS 1ng6A 109 :AEV T0547 583 :LVNDK 1ng6A 113 :ASSKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=108023 # 1fk5A.579.57 read from T0547.t06.many.frag # found chain 1fk5A in training set T0547 579 :SNSKLVNDK 1fk5A 58 :AGVSGLNAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108024 # 1gx5A.579.489 read from T0547.t06.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)K582 (1gx5A)G493 because L (left) conformation "forbidden" or filtered. T0547 579 :SNS 1gx5A 490 :RKL T0547 583 :LVNDK 1gx5A 494 :VPPLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=108026 # 2bwbA.579.14 read from T0547.t06.many.frag # found chain 2bwbA in template set Warning: unaligning (T0547)K582 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (2bwbA)D346 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNS 2bwbA 340 :NDM T0547 583 :LV 2bwbA 344 :FF T0547 586 :DK 2bwbA 347 :FD Number of specific fragments extracted= 3 number of extra gaps= 2 total=108029 # 1tfr.579.275 read from T0547.t06.many.frag # found chain 1tfr in template set T0547 579 :SNSKLVNDK 1tfr 276 :NSYKLPPRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108030 # 2cpgA.579.21 read from T0547.t06.many.frag # found chain 2cpgA in training set Warning: unaligning (T0547)K582 (2cpgA)G25 because L (left) conformation "forbidden" or filtered. T0547 579 :SNS 2cpgA 22 :REM T0547 583 :LVNDK 2cpgA 26 :LSKSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=108032 # 2d1pA.579.94 read from T0547.t06.many.frag # found chain 2d1pA in template set T0547 579 :SNSKLVNDK 2d1pA 83 :LRRGVVDET Number of specific fragments extracted= 1 number of extra gaps= 0 total=108033 # 3ygsP.579.30 read from T0547.t06.many.frag # found chain 3ygsP in template set Warning: unaligning (T0547)S581 (3ygsP)R33 because G (3-10) conformation "forbidden" or filtered. T0547 579 :SN 3ygsP 31 :LS T0547 582 :KLVNDK 3ygsP 34 :ELFRPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=108035 # 1ojhA.579.19 read from T0547.t06.many.frag # found chain 1ojhA in training set T0547 579 :SNSKLVNDK 1ojhA 20 :TQVQNMSHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108036 # 1qrvA.579.23 read from T0547.t06.many.frag # found chain 1qrvA in template set Warning: unaligning (T0547)L583 (1qrvA)G29 because T (delta_L) conformation "forbidden" or filtered. T0547 579 :SNSK 1qrvA 25 :RENP T0547 584 :VNDK 1qrvA 30 :IKVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=108038 # 1g8eA.579.43 read from T0547.t06.many.frag # found chain 1g8eA in training set T0547 579 :SNSKLVNDK 1g8eA 44 :TTLAALTLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=108039 # 1l6xB.579.12 read from T0547.t06.many.frag # found chain 1l6xB in training set Warning: unaligning (T0547)N585 (1l6xB)N24 because P (beta_P) conformation "forbidden" or filtered. T0547 579 :SNSKLV 1l6xB 18 :LHDPNL T0547 586 :DK 1l6xB 25 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108041 # 1q08A.579.29 read from T0547.t06.many.frag # found chain 1q08A in template set T0547 579 :SNSKLVNDK 1q08A 72 :IDPEHHTCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108042 # 1jhgA.579.79 read from T0547.t06.many.frag # found chain 1jhgA in training set T0547 579 :SNSKLVNDK 1jhgA 87 :NSLKAAPVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108043 # 2f6kA.580.283 read from T0547.t06.many.frag # found chain 2f6kA in template set Warning: unaligning (T0547)N580 (2f6kA)T284 because G (3-10) conformation "forbidden" or filtered. T0547 581 :SKLVNDKQ 2f6kA 285 :TDLLTNEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=108044 # 1u9lA.580.42 read from T0547.t06.many.frag # found chain 1u9lA in template set Warning: unaligning (T0547)L583 (1u9lA)G397 because T (delta_L) conformation "forbidden" or filtered. T0547 580 :NSK 1u9lA 394 :EIE T0547 584 :VNDKQ 1u9lA 398 :LDEPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=108046 # 1x2iA.580.49 read from T0547.t06.many.frag # found chain 1x2iA in training set Warning: unaligning (T0547)L583 (1x2iA)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 580 :NSK 1x2iA 47 :KVE T0547 584 :VNDKQ 1x2iA 51 :IGEKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=108048 # 1l8aA.580.857 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 580 :NSKLVNDKQ 1l8aA 858 :KRGEIDKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108049 # 1w6kA.580.302 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 580 :NSKLVNDKQ 1w6kA 303 :YEHHHSAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108050 # 1u20A.580.190 read from T0547.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)N585 (1u20A)R196 because P (beta_P) conformation "forbidden" or filtered. T0547 580 :NSKLV 1u20A 191 :SLKLL T0547 586 :DKQ 1u20A 197 :EDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=108052 # 1xvhA.580.90 read from T0547.t06.many.frag # found chain 1xvhA in template set T0547 580 :NSKLVNDKQ 1xvhA 91 :GASDLNQKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108053 # 2bwbA.580.15 read from T0547.t06.many.frag # found chain 2bwbA in template set Warning: unaligning (T0547)S581 (2bwbA)M342 because G (3-10) conformation "forbidden" or filtered. T0547 580 :N 2bwbA 341 :D T0547 582 :KLVNDKQ 2bwbA 343 :GFFDFDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=108055 # 1utg.580.43 read from T0547.t06.many.frag # found chain 1utg in training set T0547 580 :NSKLVNDKQ 1utg 44 :VLDSLPQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108056 # 1guxA.580.166 read from T0547.t06.many.frag # found chain 1guxA in template set Warning: unaligning (T0547)N585 (1guxA)T543 because P (beta_P) conformation "forbidden" or filtered. T0547 580 :NSKLV 1guxA 538 :AEGNL T0547 586 :DKQ 1guxA 544 :REM Number of specific fragments extracted= 2 number of extra gaps= 1 total=108058 # 1qc7A.580.59 read from T0547.t06.many.frag # found chain 1qc7A in template set Warning: unaligning (T0547)K582 (1qc7A)G296 because S (epsilon) conformation "forbidden" or filtered. T0547 580 :NS 1qc7A 294 :YM T0547 583 :LVNDKQ 1qc7A 297 :PVRLKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=108060 # 1kxu.580.270 read from T0547.t06.many.frag # found chain 1kxu in template set T0547 580 :NSKLVNDKQ 1kxu 261 :KYEPPRSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108061 # 1qrvA.580.24 read from T0547.t06.many.frag # found chain 1qrvA in template set Warning: unaligning (T0547)L583 (1qrvA)G29 because T (delta_L) conformation "forbidden" or filtered. T0547 580 :NSK 1qrvA 26 :ENP T0547 584 :VNDKQ 1qrvA 30 :IKVTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108063 # 1l6xB.580.13 read from T0547.t06.many.frag # found chain 1l6xB in training set Warning: unaligning (T0547)S581 (1l6xB)D20 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1l6xB)N24 because P (beta_P) conformation "forbidden" or filtered. T0547 580 :N 1l6xB 19 :H T0547 582 :KLV 1l6xB 21 :PNL T0547 586 :DKQ 1l6xB 25 :EEQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=108066 # 1j5wA.580.259 read from T0547.t06.many.frag # found chain 1j5wA in template set Warning: unaligning (T0547)K582 (1j5wA)G250 because L (left) conformation "forbidden" or filtered. T0547 580 :NS 1j5wA 248 :AR T0547 583 :LVNDKQ 1j5wA 251 :AISVSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=108068 # 1g8eA.580.44 read from T0547.t06.many.frag # found chain 1g8eA in training set T0547 580 :NSKLVNDKQ 1g8eA 45 :TLAALTLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108069 # 1z3eB.580.44 read from T0547.t06.many.frag # found chain 1z3eB in training set T0547 580 :NSKLVNDKQ 1z3eB 287 :KVRNLGRKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=108070 # 2d1eA.580.192 read from T0547.t06.many.frag # found chain 2d1eA in training set T0547 580 :NSKLVNDKQ 2d1eA 193 :VAEPLSEAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108071 # 1z2nX.580.251 read from T0547.t06.many.frag # found chain 1z2nX in training set Warning: unaligning (T0547)S581 (1z2nX)L248 because G (3-10) conformation "forbidden" or filtered. T0547 580 :N 1z2nX 247 :L T0547 582 :KLVNDKQ 1z2nX 249 :NLTSEAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108073 # 1vqoP.580.110 read from T0547.t06.many.frag # found chain 1vqoP in template set Warning: unaligning (T0547)K582 (1vqoP)G112 because T (delta_L) conformation "forbidden" or filtered. T0547 580 :NS 1vqoP 110 :DE T0547 583 :LVNDKQ 1vqoP 113 :TLSSSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=108075 # 1sd4A.580.103 read from T0547.t06.many.frag # found chain 1sd4A in template set Warning: unaligning (T0547)K582 (1sd4A)E106 because L (left) conformation "forbidden" or filtered. T0547 580 :NS 1sd4A 104 :KN T0547 583 :LVNDKQ 1sd4A 107 :ELNNKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108077 # 1vdkA.580.440 read from T0547.t06.many.frag # found chain 1vdkA in training set Warning: unaligning (T0547)K582 (1vdkA)G443 because T (delta_L) conformation "forbidden" or filtered. T0547 580 :NS 1vdkA 441 :EL T0547 583 :LVNDKQ 1vdkA 444 :YLTEEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108079 # 1fk5A.580.58 read from T0547.t06.many.frag # found chain 1fk5A in training set Warning: unaligning (T0547)K582 (1fk5A)S61 because P (beta_P) conformation "forbidden" or filtered. T0547 580 :NS 1fk5A 59 :GV T0547 583 :LVNDKQ 1fk5A 62 :GLNAGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=108081 # 1ug3A.580.318 read from T0547.t06.many.frag # found chain 1ug3A in template set Warning: unaligning (T0547)K582 (1ug3A)D1554 because L (left) conformation "forbidden" or filtered. T0547 580 :NS 1ug3A 1552 :DE T0547 583 :LVNDKQ 1ug3A 1555 :VVKEDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=108083 # 1gx5A.580.490 read from T0547.t06.many.frag # found chain 1gx5A in template set Warning: unaligning (T0547)K582 (1gx5A)G493 because L (left) conformation "forbidden" or filtered. T0547 580 :NS 1gx5A 491 :KL T0547 583 :LVNDKQ 1gx5A 494 :VPPLRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=108085 # 1ynpA.580.290 read from T0547.t06.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)S581 (1ynpA)A272 because P (beta_P) conformation "forbidden" or filtered. T0547 580 :N 1ynpA 271 :E T0547 582 :KLVNDKQ 1ynpA 273 :TPLTAEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108087 # 1t6uA.580.87 read from T0547.t06.many.frag # found chain 1t6uA in training set T0547 580 :NSKLVNDKQ 1t6uA 88 :AKGSKDPAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108088 # 2d1pA.580.95 read from T0547.t06.many.frag # found chain 2d1pA in template set Warning: unaligning (T0547)K582 (2d1pA)G86 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L583 (2d1pA)V87 because D (zeta) conformation "forbidden" or filtered. T0547 580 :NS 2d1pA 84 :RR T0547 584 :VNDKQ 2d1pA 88 :VDETE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108090 # 1jhgA.580.80 read from T0547.t06.many.frag # found chain 1jhgA in training set T0547 580 :NSKLVNDKQ 1jhgA 88 :SLKAAPVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108091 # 1h8eA.580.484 read from T0547.t06.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K582 (1h8eA)G487 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L583 (1h8eA)K488 because Y (epsilon') conformation "forbidden" or filtered. T0547 580 :NS 1h8eA 485 :TD T0547 584 :VNDKQ 1h8eA 489 :ISEES Number of specific fragments extracted= 2 number of extra gaps= 1 total=108093 # 2f6kA.581.284 read from T0547.t06.many.frag # found chain 2f6kA in template set Warning: unaligning (T0547)N585 (2f6kA)T289 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :SKLV 2f6kA 285 :TDLL T0547 586 :DKQK 2f6kA 290 :NEQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=108095 # 1x2iA.581.50 read from T0547.t06.many.frag # found chain 1x2iA in training set Warning: unaligning (T0547)K582 (1x2iA)E49 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L583 (1x2iA)G50 because T (delta_L) conformation "forbidden" or filtered. T0547 581 :S 1x2iA 48 :V T0547 584 :VNDKQK 1x2iA 51 :IGEKIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=108097 # 1l8aA.581.858 read from T0547.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0547)N585 (1l8aA)D863 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :SKLV 1l8aA 859 :RGEI T0547 586 :DKQK 1l8aA 864 :KKVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=108099 # 1u9lA.581.43 read from T0547.t06.many.frag # found chain 1u9lA in template set Warning: unaligning (T0547)L583 (1u9lA)G397 because T (delta_L) conformation "forbidden" or filtered. T0547 581 :SK 1u9lA 395 :IE T0547 584 :VNDKQK 1u9lA 398 :LDEPTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=108101 # 1kxu.581.271 read from T0547.t06.many.frag # found chain 1kxu in template set Warning: unaligning (T0547)S581 (1kxu)Y262 because P (beta_P) conformation "forbidden" or filtered. T0547 582 :KLVNDKQK 1kxu 263 :EPPRSEEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=108102 # 1utg.581.44 read from T0547.t06.many.frag # found chain 1utg in training set Warning: unaligning (T0547)N585 (1utg)P49 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :SKLV 1utg 45 :LDSL T0547 586 :DKQK 1utg 50 :QTTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=108104 # 1z2nX.581.252 read from T0547.t06.many.frag # found chain 1z2nX in training set Warning: unaligning (T0547)K582 (1z2nX)N249 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)V584 (1z2nX)T251 because Y (epsilon') conformation "forbidden" or filtered. T0547 581 :S 1z2nX 248 :L T0547 583 :L 1z2nX 250 :L T0547 585 :NDKQK 1z2nX 252 :SEAEM Number of specific fragments extracted= 3 number of extra gaps= 2 total=108107 # 1j5wA.581.260 read from T0547.t06.many.frag # found chain 1j5wA in template set Warning: unaligning (T0547)K582 (1j5wA)G250 because L (left) conformation "forbidden" or filtered. T0547 581 :S 1j5wA 249 :R T0547 583 :LVNDKQK 1j5wA 251 :AISVSQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=108109 # 1w6kA.581.303 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 581 :SKLVNDKQK 1w6kA 304 :EHHHSAHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108110 # 1ngkA.581.100 read from T0547.t06.many.frag # found chain 1ngkA in template set T0547 581 :SKLVNDKQK 1ngkA 101 :SETLDDEHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108111 # 1ynpA.581.291 read from T0547.t06.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)K582 (1ynpA)T273 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :S 1ynpA 272 :A T0547 583 :LVNDKQK 1ynpA 274 :PLTAEER Number of specific fragments extracted= 2 number of extra gaps= 1 total=108113 # 1guxA.581.167 read from T0547.t06.many.frag # found chain 1guxA in template set T0547 581 :SKLVNDKQK 1guxA 539 :EGNLTREMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108114 # 1u20A.581.191 read from T0547.t06.many.frag # found chain 1u20A in template set T0547 581 :SKLVNDKQK 1u20A 192 :LKLLREDQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108115 # 2eucA.581.80 read from T0547.t06.many.frag # found chain 2eucA in template set T0547 581 :SKLVNDKQK 2eucA 81 :LPYVTADMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108116 # 1sa3A.581.159 read from T0547.t06.many.frag # found chain 1sa3A in template set T0547 581 :SKLVNDKQK 1sa3A 160 :AKLFTPVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108117 # 1l6xB.581.14 read from T0547.t06.many.frag # found chain 1l6xB in training set T0547 581 :SKLVNDKQK 1l6xB 20 :DPNLNEEQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108118 # 1w8iA.581.133 read from T0547.t06.many.frag # found chain 1w8iA in template set T0547 581 :SKLVNDKQK 1w8iA 134 :WKSLDESER Number of specific fragments extracted= 1 number of extra gaps= 0 total=108119 # 1xvhA.581.91 read from T0547.t06.many.frag # found chain 1xvhA in template set T0547 581 :SKLVNDKQK 1xvhA 92 :ASDLNQKQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108120 # 1vqoP.581.111 read from T0547.t06.many.frag # found chain 1vqoP in template set T0547 581 :SKLVNDKQK 1vqoP 111 :EGTLSSSQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108121 # 1eswA.581.478 read from T0547.t06.many.frag # found chain 1eswA in template set Warning: unaligning (T0547)K582 (1eswA)G480 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1eswA)S483 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :S 1eswA 479 :P T0547 583 :LV 1eswA 481 :EL T0547 586 :DKQK 1eswA 484 :PEHG Number of specific fragments extracted= 3 number of extra gaps= 2 total=108124 # 1h8eA.581.485 read from T0547.t06.many.frag # found chain 1h8eA in template set Warning: unaligning (T0547)K582 (1h8eA)G487 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)L583 (1h8eA)K488 because Y (epsilon') conformation "forbidden" or filtered. T0547 581 :S 1h8eA 486 :D T0547 584 :VNDKQK 1h8eA 489 :ISEESD Number of specific fragments extracted= 2 number of extra gaps= 1 total=108126 # 1t6uA.581.88 read from T0547.t06.many.frag # found chain 1t6uA in training set T0547 581 :SKLVNDKQK 1t6uA 89 :KGSKDPATG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108127 # 1x6iA.581.34 read from T0547.t06.many.frag # found chain 1x6iA in training set Warning: unaligning (T0547)N585 (1x6iA)S36 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :SKLV 1x6iA 32 :YDSL T0547 586 :DKQK 1x6iA 37 :DDEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=108129 # 1g8mA.581.516 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 581 :SKLVNDKQK 1g8mA 517 :PAQLTEAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108130 # 1b4fA.581.51 read from T0547.t06.many.frag # found chain 1b4fA in template set T0547 581 :SKLVNDKQK 1b4fA 52 :VGVTLAGHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108131 # 1g8eA.581.45 read from T0547.t06.many.frag # found chain 1g8eA in training set Warning: unaligning (T0547)N585 (1g8eA)T50 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :SKLV 1g8eA 46 :LAAL T0547 586 :DKQK 1g8eA 51 :LPQM Number of specific fragments extracted= 2 number of extra gaps= 1 total=108133 # 2bptA.581.557 read from T0547.t06.many.frag # found chain 2bptA in template set Warning: unaligning (T0547)N585 (2bptA)T562 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :SKLV 2bptA 558 :ENQL T0547 586 :DKQK 2bptA 563 :LEDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=108135 # 1qrvA.581.25 read from T0547.t06.many.frag # found chain 1qrvA in template set Warning: unaligning (T0547)N585 (1qrvA)K31 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :SKLV 1qrvA 27 :NPGI T0547 586 :DKQK 1qrvA 32 :VTEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=108137 # 2c3nA.581.226 read from T0547.t06.many.frag # found chain 2c3nA in training set Warning: unaligning (T0547)N585 (2c3nA)D224 because P (beta_P) conformation "forbidden" or filtered. T0547 581 :SKLV 2c3nA 220 :FPPA T0547 586 :DKQK 2c3nA 225 :PTIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=108139 # 1sd4A.581.104 read from T0547.t06.many.frag # found chain 1sd4A in template set T0547 581 :SKLVNDKQK 1sd4A 105 :NEELNNKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108140 # 1j5wA.582.261 read from T0547.t06.many.frag # found chain 1j5wA in template set Warning: unaligning (T0547)K582 (1j5wA)G250 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1j5wA)S253 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LV 1j5wA 251 :AI T0547 586 :DKQKK 1j5wA 254 :VSQRQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=108142 # 1kxu.582.272 read from T0547.t06.many.frag # found chain 1kxu in template set Warning: unaligning (T0547)N585 (1kxu)R266 because P (beta_P) conformation "forbidden" or filtered. T0547 582 :KLV 1kxu 263 :EPP T0547 586 :DKQKK 1kxu 267 :SEEVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=108144 # 2f6kA.582.285 read from T0547.t06.many.frag # found chain 2f6kA in template set T0547 582 :KLVNDKQKK 2f6kA 286 :DLLTNEQKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108145 # 1x2iA.582.51 read from T0547.t06.many.frag # found chain 1x2iA in training set Warning: unaligning (T0547)K582 (1x2iA)E49 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1x2iA)G52 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LV 1x2iA 50 :GI T0547 586 :DKQKK 1x2iA 53 :EKIAK Number of specific fragments extracted= 2 number of extra gaps= 2 total=108147 # 1sa3A.582.160 read from T0547.t06.many.frag # found chain 1sa3A in template set T0547 582 :KLVNDKQKK 1sa3A 161 :KLFTPVQKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108148 # 1ngkA.582.101 read from T0547.t06.many.frag # found chain 1ngkA in template set T0547 582 :KLVNDKQKK 1ngkA 102 :ETLDDEHRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108149 # 2eucA.582.81 read from T0547.t06.many.frag # found chain 2eucA in template set T0547 582 :KLVNDKQKK 2eucA 82 :PYVTADMFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108150 # 1ynpA.582.292 read from T0547.t06.many.frag # found chain 1ynpA in training set Warning: unaligning (T0547)K582 (1ynpA)T273 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LVNDKQKK 1ynpA 274 :PLTAEERQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=108151 # 2bptA.582.558 read from T0547.t06.many.frag # found chain 2bptA in template set T0547 582 :KLVNDKQKK 2bptA 559 :NQLTLEDAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108152 # 1e4cP.582.191 read from T0547.t06.many.frag # found chain 1e4cP in training set T0547 582 :KLVNDKQKK 1e4cP 192 :PVLSDEEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108153 # 1x6iA.582.35 read from T0547.t06.many.frag # found chain 1x6iA in training set T0547 582 :KLVNDKQKK 1x6iA 33 :DSLSDDEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108154 # 1u9lA.582.44 read from T0547.t06.many.frag # found chain 1u9lA in template set Warning: unaligning (T0547)K582 (1u9lA)E396 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LVNDKQKK 1u9lA 397 :GLDEPTVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=108155 # 1l8aA.582.859 read from T0547.t06.many.frag # found chain 1l8aA in template set T0547 582 :KLVNDKQKK 1l8aA 860 :GEIDKKVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108156 # 1g8mA.582.517 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 582 :KLVNDKQKK 1g8mA 518 :AQLTEAEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108157 # 1utg.582.45 read from T0547.t06.many.frag # found chain 1utg in training set T0547 582 :KLVNDKQKK 1utg 46 :DSLPQTTRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108158 # 1w8iA.582.134 read from T0547.t06.many.frag # found chain 1w8iA in template set T0547 582 :KLVNDKQKK 1w8iA 135 :KSLDESERK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108159 # 1zx1A.582.193 read from T0547.t06.many.frag # found chain 1zx1A in template set Warning: unaligning (T0547)N585 (1zx1A)S196 because P (beta_P) conformation "forbidden" or filtered. T0547 582 :KLV 1zx1A 193 :EIA T0547 586 :DKQKK 1zx1A 197 :EEERK Number of specific fragments extracted= 2 number of extra gaps= 1 total=108161 # 1z2nX.582.253 read from T0547.t06.many.frag # found chain 1z2nX in training set Warning: unaligning (T0547)K582 (1z2nX)N249 because L (left) conformation "forbidden" or filtered. T0547 583 :LVNDKQKK 1z2nX 250 :LTSEAEMR Number of specific fragments extracted= 1 number of extra gaps= 1 total=108162 # 1jo0A.582.51 read from T0547.t06.many.frag # found chain 1jo0A in training set T0547 582 :KLVNDKQKK 1jo0A 53 :AGADRETKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108163 # 1vqoP.582.112 read from T0547.t06.many.frag # found chain 1vqoP in template set T0547 582 :KLVNDKQKK 1vqoP 112 :GTLSSSQYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108164 # 1b4fA.582.52 read from T0547.t06.many.frag # found chain 1b4fA in template set Warning: unaligning (T0547)N585 (1b4fA)L56 because P (beta_P) conformation "forbidden" or filtered. T0547 582 :KLV 1b4fA 53 :GVT T0547 586 :DKQKK 1b4fA 57 :AGHQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=108166 # 1t0tV.582.156 read from T0547.t06.many.frag # found chain 1t0tV in training set T0547 582 :KLVNDKQKK 1t0tV 157 :YMLSMEQRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108167 # 1twfF.582.82 read from T0547.t06.many.frag # found chain 1twfF in template set Warning: unaligning (T0547)N585 (1twfF)T86 because P (beta_P) conformation "forbidden" or filtered. T0547 582 :KLV 1twfF 83 :PYM T0547 586 :DKQKK 1twfF 87 :KYERA Number of specific fragments extracted= 2 number of extra gaps= 1 total=108169 # 1w6kA.582.304 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 582 :KLVNDKQKK 1w6kA 305 :HHHSAHLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108170 # 1eswA.582.479 read from T0547.t06.many.frag # found chain 1eswA in template set Warning: unaligning (T0547)K582 (1eswA)G480 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1eswA)S483 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LV 1eswA 481 :EL T0547 586 :DKQKK 1eswA 484 :PEHGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=108172 # 1x9zA.582.142 read from T0547.t06.many.frag # found chain 1x9zA in template set Warning: unaligning (T0547)K582 (1x9zA)A570 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)N585 (1x9zA)S573 because E (beta_S) conformation "forbidden" or filtered. T0547 583 :LV 1x9zA 571 :QW T0547 586 :DKQKK 1x9zA 574 :MAQAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=108174 # 1v54D.582.48 read from T0547.t06.many.frag # found chain 1v54D in training set T0547 582 :KLVNDKQKK 1v54D 49 :SSLSIDEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108175 # 1ak0.582.161 read from T0547.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0547)L583 (1ak0)G163 because Y (epsilon') conformation "forbidden" or filtered. T0547 582 :K 1ak0 162 :G T0547 584 :VNDKQKK 1ak0 164 :HALSDAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108177 # 2c3nA.582.227 read from T0547.t06.many.frag # found chain 2c3nA in training set Warning: unaligning (T0547)K582 (2c3nA)P221 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LVNDKQKK 2c3nA 222 :PADPTIKQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=108178 # 1u20A.582.192 read from T0547.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0547)K582 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0547 583 :LVNDKQKK 1u20A 194 :LLREDQIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=108179 # 1sa3A.583.161 read from T0547.t06.many.frag # found chain 1sa3A in template set T0547 583 :LVNDKQKKH 1sa3A 162 :LFTPVQKQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108180 # 2f6kA.583.286 read from T0547.t06.many.frag # found chain 2f6kA in template set Warning: unaligning (T0547)N585 (2f6kA)T289 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LV 2f6kA 287 :LL T0547 586 :DKQKKH 2f6kA 290 :NEQKQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=108182 # 2eucA.583.82 read from T0547.t06.many.frag # found chain 2eucA in template set T0547 583 :LVNDKQKKH 2eucA 83 :YVTADMFET Number of specific fragments extracted= 1 number of extra gaps= 0 total=108183 # 1ngkA.583.102 read from T0547.t06.many.frag # found chain 1ngkA in template set T0547 583 :LVNDKQKKH 1ngkA 103 :TLDDEHRRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108184 # 1j5wA.583.262 read from T0547.t06.many.frag # found chain 1j5wA in template set T0547 583 :LVNDKQKKH 1j5wA 251 :AISVSQRQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108185 # 2bptA.583.559 read from T0547.t06.many.frag # found chain 2bptA in template set Warning: unaligning (T0547)N585 (2bptA)T562 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LV 2bptA 560 :QL T0547 586 :DKQKKH 2bptA 563 :LEDAQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=108187 # 1kxu.583.273 read from T0547.t06.many.frag # found chain 1kxu in template set T0547 583 :LVNDKQKKH 1kxu 264 :PPRSEEVAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108188 # 1ynpA.583.293 read from T0547.t06.many.frag # found chain 1ynpA in training set T0547 583 :LVNDKQKKH 1ynpA 274 :PLTAEERQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=108189 # 1x6iA.583.36 read from T0547.t06.many.frag # found chain 1x6iA in training set T0547 583 :LVNDKQKKH 1x6iA 34 :SLSDDEKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108190 # 1zx1A.583.194 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 583 :LVNDKQKKH 1zx1A 194 :IASEEERKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108191 # 1g8mA.583.518 read from T0547.t06.many.frag # found chain 1g8mA in training set T0547 583 :LVNDKQKKH 1g8mA 519 :QLTEAEKKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108192 # 1n35A.583.1024 read from T0547.t06.many.frag # found chain 1n35A in template set T0547 583 :LVNDKQKKH 1n35A 1025 :IATREELAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108193 # 1jo0A.583.52 read from T0547.t06.many.frag # found chain 1jo0A in training set Warning: unaligning (T0547)L583 (1jo0A)G54 because L (left) conformation "forbidden" or filtered. T0547 584 :VNDKQKKH 1jo0A 55 :ADRETKQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=108194 # 1e4cP.583.192 read from T0547.t06.many.frag # found chain 1e4cP in training set T0547 583 :LVNDKQKKH 1e4cP 193 :VLSDEEIAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108195 # 1utg.583.46 read from T0547.t06.many.frag # found chain 1utg in training set T0547 583 :LVNDKQKKH 1utg 47 :SLPQTTREN Number of specific fragments extracted= 1 number of extra gaps= 0 total=108196 # 1z2nX.583.254 read from T0547.t06.many.frag # found chain 1z2nX in training set T0547 583 :LVNDKQKKH 1z2nX 250 :LTSEAEMRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108197 # 1v54D.583.49 read from T0547.t06.many.frag # found chain 1v54D in training set T0547 583 :LVNDKQKKH 1v54D 50 :SLSIDEKVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108198 # 1aquA.583.268 read from T0547.t06.many.frag # found chain 1aquA in training set T0547 583 :LVNDKQKKH 1aquA 267 :HFPEALRER Number of specific fragments extracted= 1 number of extra gaps= 0 total=108199 # 2mhr.583.89 read from T0547.t06.many.frag # found chain 2mhr in training set Warning: unaligning (T0547)L583 (2mhr)P90 because C (cis) conformation "forbidden" or filtered. T0547 584 :VNDKQKKH 2mhr 91 :VDAKNVDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=108200 # 1twfF.583.83 read from T0547.t06.many.frag # found chain 1twfF in template set T0547 583 :LVNDKQKKH 1twfF 84 :YMTKYERAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108201 # 1sczA.583.205 read from T0547.t06.many.frag # found chain 1sczA in template set T0547 583 :LVNDKQKKH 1sczA 377 :LIDGRESVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108202 # 1t0tV.583.157 read from T0547.t06.many.frag # found chain 1t0tV in training set T0547 583 :LVNDKQKKH 1t0tV 158 :MLSMEQRRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108203 # 1nxhA.583.85 read from T0547.t06.many.frag # found chain 1nxhA in template set T0547 583 :LVNDKQKKH 1nxhA 86 :IISVDDAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108204 # 1vqoP.583.113 read from T0547.t06.many.frag # found chain 1vqoP in template set Warning: unaligning (T0547)N585 (1vqoP)S115 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LV 1vqoP 113 :TL T0547 586 :DKQKKH 1vqoP 116 :SSQYRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=108206 # 1vflA.583.332 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 583 :LVNDKQKKH 1vflA 331 :FLPEDEKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108207 # 1lfb.583.32 read from T0547.t06.many.frag # found chain 1lfb in template set Warning: unaligning (T0547)L583 (1lfb)N33 because D (zeta) conformation "forbidden" or filtered. T0547 584 :VNDKQKKH 1lfb 34 :PSKEERET Number of specific fragments extracted= 1 number of extra gaps= 1 total=108208 # 1w6kA.583.305 read from T0547.t06.many.frag # found chain 1w6kA in template set Warning: unaligning (T0547)N585 (1w6kA)S308 because P (beta_P) conformation "forbidden" or filtered. T0547 583 :LV 1w6kA 306 :HH T0547 586 :DKQKKH 1w6kA 309 :AHLRQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=108210 # 1w8iA.583.135 read from T0547.t06.many.frag # found chain 1w8iA in template set T0547 583 :LVNDKQKKH 1w8iA 136 :SLDESERKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108211 # 1otjA.583.211 read from T0547.t06.many.frag # found chain 1otjA in template set T0547 583 :LVNDKQKKH 1otjA 212 :DVSEKESEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108212 # 1x9zA.583.143 read from T0547.t06.many.frag # found chain 1x9zA in template set T0547 583 :LVNDKQKKH 1x9zA 571 :QWSMAQAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108213 # 2eucA.584.83 read from T0547.t06.many.frag # found chain 2eucA in template set Warning: unaligning (T0547)N585 (2eucA)T85 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 2eucA 84 :V T0547 586 :DKQKKHI 2eucA 86 :ADMFETS Number of specific fragments extracted= 2 number of extra gaps= 1 total=108215 # 1ngkA.584.103 read from T0547.t06.many.frag # found chain 1ngkA in template set T0547 584 :VNDKQKKHI 1ngkA 104 :LDDEHRREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108216 # 1zx1A.584.195 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 584 :VNDKQKKHI 1zx1A 195 :ASEEERKGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=108217 # 1aquA.584.269 read from T0547.t06.many.frag # found chain 1aquA in training set T0547 584 :VNDKQKKHI 1aquA 268 :FPEALRERF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108218 # 1otjA.584.212 read from T0547.t06.many.frag # found chain 1otjA in template set T0547 584 :VNDKQKKHI 1otjA 213 :VSEKESEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108219 # 2bptA.584.560 read from T0547.t06.many.frag # found chain 2bptA in template set T0547 584 :VNDKQKKHI 2bptA 561 :LTLEDAQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108220 # 1t0tV.584.158 read from T0547.t06.many.frag # found chain 1t0tV in training set T0547 584 :VNDKQKKHI 1t0tV 159 :LSMEQRREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108221 # 1twfF.584.84 read from T0547.t06.many.frag # found chain 1twfF in template set T0547 584 :VNDKQKKHI 1twfF 85 :MTKYERARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108222 # 1vflA.584.333 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 584 :VNDKQKKHI 1vflA 332 :LPEDEKKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108223 # 1jo0A.584.53 read from T0547.t06.many.frag # found chain 1jo0A in training set T0547 584 :VNDKQKKHI 1jo0A 55 :ADRETKQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108224 # 1sczA.584.206 read from T0547.t06.many.frag # found chain 1sczA in template set T0547 584 :VNDKQKKHI 1sczA 378 :IDGRESVGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108225 # 1j5wA.584.263 read from T0547.t06.many.frag # found chain 1j5wA in template set T0547 584 :VNDKQKKHI 1j5wA 252 :ISVSQRQTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108226 # 1sa3A.584.162 read from T0547.t06.many.frag # found chain 1sa3A in template set T0547 584 :VNDKQKKHI 1sa3A 163 :FTPVQKQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108227 # 2f6kA.584.287 read from T0547.t06.many.frag # found chain 2f6kA in template set T0547 584 :VNDKQKKHI 2f6kA 288 :LTNEQKQAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108228 # 1s29A.584.5 read from T0547.t06.many.frag # found chain 1s29A in training set T0547 584 :VNDKQKKHI 1s29A 6 :LSSENKQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108229 # 1n35A.584.1025 read from T0547.t06.many.frag # found chain 1n35A in template set Warning: unaligning (T0547)N585 (1n35A)T1027 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 1n35A 1026 :A T0547 586 :DKQKKHI 1n35A 1028 :REELAEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=108231 # 2mhr.584.90 read from T0547.t06.many.frag # found chain 2mhr in training set Warning: unaligning (T0547)N585 (2mhr)D92 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 2mhr 91 :V T0547 586 :DKQKKHI 2mhr 93 :AKNVDYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=108233 # 1lfb.584.33 read from T0547.t06.many.frag # found chain 1lfb in template set Warning: unaligning (T0547)N585 (1lfb)S35 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 1lfb 34 :P T0547 586 :DKQKKHI 1lfb 36 :KEERETL Number of specific fragments extracted= 2 number of extra gaps= 1 total=108235 # 1utg.584.47 read from T0547.t06.many.frag # found chain 1utg in training set Warning: unaligning (T0547)N585 (1utg)P49 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 1utg 48 :L T0547 586 :DKQKKHI 1utg 50 :QTTRENI Number of specific fragments extracted= 2 number of extra gaps= 1 total=108237 # 1tr0A.584.20 read from T0547.t06.many.frag # found chain 1tr0A in training set T0547 584 :VNDKQKKHI 1tr0A 21 :ITREQIDNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108238 # 1w6kA.584.306 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 584 :VNDKQKKHI 1w6kA 307 :HSAHLRQRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108239 # 1wzdA.584.184 read from T0547.t06.many.frag # found chain 1wzdA in training set T0547 584 :VNDKQKKHI 1wzdA 185 :LSDEQREHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108240 # 1kxu.584.274 read from T0547.t06.many.frag # found chain 1kxu in template set T0547 584 :VNDKQKKHI 1kxu 265 :PRSEEVAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108241 # 1w8iA.584.136 read from T0547.t06.many.frag # found chain 1w8iA in template set Warning: unaligning (T0547)N585 (1w8iA)D138 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 1w8iA 137 :L T0547 586 :DKQKKHI 1w8iA 139 :ESERKRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=108243 # 1ykjA.584.355 read from T0547.t06.many.frag # found chain 1ykjA in template set Warning: unaligning (T0547)N585 (1ykjA)D1357 because P (beta_P) conformation "forbidden" or filtered. T0547 584 :V 1ykjA 1356 :T T0547 586 :DKQKKHI 1ykjA 1358 :AFSQRIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=108245 # 1pg4A.584.570 read from T0547.t06.many.frag # found chain 1pg4A in training set Warning: unaligning (T0547)N585 (1pg4A)S572 because Y (epsilon') conformation "forbidden" or filtered. T0547 584 :V 1pg4A 571 :P T0547 586 :DKQKKHI 1pg4A 573 :PELYAEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=108247 # 1x9zA.584.144 read from T0547.t06.many.frag # found chain 1x9zA in template set T0547 584 :VNDKQKKHI 1x9zA 572 :WSMAQAITL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108248 # 1c3cA.584.364 read from T0547.t06.many.frag # found chain 1c3cA in training set T0547 584 :VNDKQKKHI 1c3cA 366 :LTRKEAYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108249 # 1x6iA.584.37 read from T0547.t06.many.frag # found chain 1x6iA in training set T0547 584 :VNDKQKKHI 1x6iA 35 :LSDDEKRIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108250 # 2ajtA.584.220 read from T0547.t06.many.frag # found chain 2ajtA in template set T0547 584 :VNDKQKKHI 2ajtA 221 :ISDGDVNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108251 # 1aquA.585.270 read from T0547.t06.many.frag # found chain 1aquA in training set T0547 585 :NDKQKKHIL 1aquA 269 :PEALRERFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108252 # 1zx1A.585.196 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 585 :NDKQKKHIL 1zx1A 196 :SEEERKGMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108253 # 1ngkA.585.104 read from T0547.t06.many.frag # found chain 1ngkA in template set T0547 585 :NDKQKKHIL 1ngkA 105 :DDEHRRELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108254 # 1twfF.585.85 read from T0547.t06.many.frag # found chain 1twfF in template set Warning: unaligning (T0547)N585 (1twfF)T86 because P (beta_P) conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 1twfF 87 :KYERARIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=108255 # 1vflA.585.334 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 585 :NDKQKKHIL 1vflA 333 :PEDEKKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108256 # 1otjA.585.213 read from T0547.t06.many.frag # found chain 1otjA in template set Warning: unaligning (T0547)N585 (1otjA)S214 because P (beta_P) conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 1otjA 215 :EKESEALL Number of specific fragments extracted= 1 number of extra gaps= 1 total=108257 # 2eucA.585.84 read from T0547.t06.many.frag # found chain 2eucA in template set T0547 585 :NDKQKKHIL 2eucA 85 :TADMFETSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108258 # 1s29A.585.6 read from T0547.t06.many.frag # found chain 1s29A in training set T0547 585 :NDKQKKHIL 1s29A 7 :SSENKQKLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108259 # 1lfb.585.34 read from T0547.t06.many.frag # found chain 1lfb in template set T0547 585 :NDKQKKHIL 1lfb 35 :SKEERETLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108260 # 1jo0A.585.54 read from T0547.t06.many.frag # found chain 1jo0A in training set T0547 585 :NDKQKKHIL 1jo0A 56 :DRETKQLII Number of specific fragments extracted= 1 number of extra gaps= 0 total=108261 # 1sczA.585.207 read from T0547.t06.many.frag # found chain 1sczA in template set T0547 585 :NDKQKKHIL 1sczA 379 :DGRESVGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108262 # 1t0tV.585.159 read from T0547.t06.many.frag # found chain 1t0tV in training set Warning: unaligning (T0547)N585 (1t0tV)S160 because P (beta_P) conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 1t0tV 161 :MEQRRELM Number of specific fragments extracted= 1 number of extra gaps= 1 total=108263 # 2mhr.585.91 read from T0547.t06.many.frag # found chain 2mhr in training set Warning: unaligning (T0547)N585 (2mhr)D92 because P (beta_P) conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 2mhr 93 :AKNVDYCK Number of specific fragments extracted= 1 number of extra gaps= 1 total=108264 # 1a73A.585.3 read from T0547.t06.many.frag # found chain 1a73A in training set T0547 585 :NDKQKKHIL 1a73A 4 :TNAQILAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108265 # 1ykjA.585.356 read from T0547.t06.many.frag # found chain 1ykjA in template set T0547 585 :NDKQKKHIL 1ykjA 1357 :DAFSQRIQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108266 # 2bmoA.585.334 read from T0547.t06.many.frag # found chain 2bmoA in training set T0547 585 :NDKQKKHIL 2bmoA 335 :PEDLKRRVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108267 # 1cfr.585.193 read from T0547.t06.many.frag # found chain 1cfr in template set T0547 585 :NDKQKKHIL 1cfr 194 :RPDRRLQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108268 # 1pg4A.585.571 read from T0547.t06.many.frag # found chain 1pg4A in training set Warning: unaligning (T0547)N585 (1pg4A)S572 because Y (epsilon') conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 1pg4A 573 :PELYAEVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=108269 # 2bptA.585.561 read from T0547.t06.many.frag # found chain 2bptA in template set T0547 585 :NDKQKKHIL 2bptA 562 :TLEDAQSLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108270 # 1x75A.585.104 read from T0547.t06.many.frag # found chain 1x75A in template set T0547 585 :NDKQKKHIL 1x75A 467 :TGLEHEKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108271 # 1w6kA.585.307 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 585 :NDKQKKHIL 1w6kA 308 :SAHLRQRAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108272 # 1c3cA.585.365 read from T0547.t06.many.frag # found chain 1c3cA in training set T0547 585 :NDKQKKHIL 1c3cA 367 :TRKEAYDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108273 # 1j5wA.585.264 read from T0547.t06.many.frag # found chain 1j5wA in template set T0547 585 :NDKQKKHIL 1j5wA 253 :SVSQRQTYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108274 # 1tr0A.585.21 read from T0547.t06.many.frag # found chain 1tr0A in training set Warning: unaligning (T0547)N585 (1tr0A)T22 because P (beta_P) conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 1tr0A 23 :REQIDNYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=108275 # 1wzdA.585.185 read from T0547.t06.many.frag # found chain 1wzdA in training set T0547 585 :NDKQKKHIL 1wzdA 186 :SDEQREHLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108276 # 2blfB.585.65 read from T0547.t06.many.frag # found chain 2blfB in training set Warning: unaligning (T0547)N585 (2blfB)D566 because P (beta_P) conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 2blfB 567 :EADAKAIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=108277 # 1jh6A.585.127 read from T0547.t06.many.frag # found chain 1jh6A in training set T0547 585 :NDKQKKHIL 1jh6A 128 :TEEEKKNAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108278 # 1w8iA.585.137 read from T0547.t06.many.frag # found chain 1w8iA in template set T0547 585 :NDKQKKHIL 1w8iA 138 :DESERKRIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=108279 # 1n35A.585.1026 read from T0547.t06.many.frag # found chain 1n35A in template set T0547 585 :NDKQKKHIL 1n35A 1027 :TREELAEMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108280 # 1ntyA.585.291 read from T0547.t06.many.frag # found chain 1ntyA in training set Warning: unaligning (T0547)N585 (1ntyA)S1516 because Y (epsilon') conformation "forbidden" or filtered. T0547 586 :DKQKKHIL 1ntyA 1517 :IENKQDWI Number of specific fragments extracted= 1 number of extra gaps= 1 total=108281 # 1otjA.586.214 read from T0547.t06.many.frag # found chain 1otjA in template set T0547 586 :DKQKKHILG 1otjA 215 :EKESEALLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=108282 # 1zx1A.586.197 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 586 :DKQKKHILG 1zx1A 197 :EEERKGMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108283 # 1aquA.586.271 read from T0547.t06.many.frag # found chain 1aquA in training set T0547 586 :DKQKKHILG 1aquA 270 :EALRERFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108284 # 1twfF.586.86 read from T0547.t06.many.frag # found chain 1twfF in template set T0547 586 :DKQKKHILG 1twfF 87 :KYERARILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108285 # 1vflA.586.335 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 586 :DKQKKHILG 1vflA 334 :EDEKKELLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108286 # 1ngkA.586.105 read from T0547.t06.many.frag # found chain 1ngkA in template set T0547 586 :DKQKKHILG 1ngkA 106 :DEHRRELLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108287 # 1sczA.586.208 read from T0547.t06.many.frag # found chain 1sczA in template set T0547 586 :DKQKKHILG 1sczA 380 :GRESVGFLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108288 # 1s29A.586.7 read from T0547.t06.many.frag # found chain 1s29A in training set T0547 586 :DKQKKHILG 1s29A 8 :SENKQKLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108289 # 1a73A.586.4 read from T0547.t06.many.frag # found chain 1a73A in training set T0547 586 :DKQKKHILG 1a73A 5 :NAQILAVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=108290 # 1jo0A.586.55 read from T0547.t06.many.frag # found chain 1jo0A in training set T0547 586 :DKQKKHILG 1jo0A 57 :RETKQLIIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=108291 # 1ntyA.586.292 read from T0547.t06.many.frag # found chain 1ntyA in training set T0547 586 :DKQKKHILG 1ntyA 1517 :IENKQDWIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108292 # 1t0tV.586.160 read from T0547.t06.many.frag # found chain 1t0tV in training set T0547 586 :DKQKKHILG 1t0tV 161 :MEQRRELMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108293 # 2eucA.586.85 read from T0547.t06.many.frag # found chain 2eucA in template set T0547 586 :DKQKKHILG 2eucA 86 :ADMFETSKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108294 # 1qysA.586.56 read from T0547.t06.many.frag # found chain 1qysA in template set T0547 586 :DKQKKHILG 1qysA 57 :KKEAEKFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108295 # 1lfb.586.35 read from T0547.t06.many.frag # found chain 1lfb in template set T0547 586 :DKQKKHILG 1lfb 36 :KEERETLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108296 # 1x75A.586.105 read from T0547.t06.many.frag # found chain 1x75A in template set T0547 586 :DKQKKHILG 1x75A 468 :GLEHEKLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108297 # 2dpmA.586.215 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 586 :DKQKKHILG 2dpmA 216 :FADQVRLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108298 # 1c3cA.586.366 read from T0547.t06.many.frag # found chain 1c3cA in training set T0547 586 :DKQKKHILG 1c3cA 368 :RKEAYDIVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108299 # 1jh6A.586.128 read from T0547.t06.many.frag # found chain 1jh6A in training set T0547 586 :DKQKKHILG 1jh6A 129 :EEEKKNAQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108300 # 2mhr.586.92 read from T0547.t06.many.frag # found chain 2mhr in training set T0547 586 :DKQKKHILG 2mhr 93 :AKNVDYCKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108301 # 1tr0A.586.22 read from T0547.t06.many.frag # found chain 1tr0A in training set T0547 586 :DKQKKHILG 1tr0A 23 :REQIDNYIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=108302 # 1x9zA.586.146 read from T0547.t06.many.frag # found chain 1x9zA in template set T0547 586 :DKQKKHILG 1x9zA 574 :MAQAITLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108303 # 1ykjA.586.357 read from T0547.t06.many.frag # found chain 1ykjA in template set T0547 586 :DKQKKHILG 1ykjA 1358 :AFSQRIQQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108304 # 1utg.586.49 read from T0547.t06.many.frag # found chain 1utg in training set T0547 586 :DKQKKHILG 1utg 50 :QTTRENIMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108305 # 1w6kA.586.308 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 586 :DKQKKHILG 1w6kA 309 :AHLRQRAVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108306 # 1u8xX.586.442 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 586 :DKQKKHILG 1u8xX 420 :ARVARLILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108307 # 1cfr.586.194 read from T0547.t06.many.frag # found chain 1cfr in template set T0547 586 :DKQKKHILG 1cfr 195 :PDRRLQLAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=108308 # 2ajtA.586.222 read from T0547.t06.many.frag # found chain 2ajtA in template set T0547 586 :DKQKKHILG 2ajtA 223 :DGDVNALVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108309 # 1pmmA.586.430 read from T0547.t06.many.frag # found chain 1pmmA in template set T0547 586 :DKQKKHILG 1pmmA 431 :MDFAELLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108310 # 1wvfA.586.487 read from T0547.t06.many.frag # found chain 1wvfA in training set T0547 586 :DKQKKHILG 1wvfA 489 :PVKRKLEHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108311 # 1otjA.587.215 read from T0547.t06.many.frag # found chain 1otjA in template set T0547 587 :KQKKHILGE 1otjA 216 :KESEALLSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108312 # 1zx1A.587.198 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 587 :KQKKHILGE 1zx1A 198 :EERKGMVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108313 # 1a73A.587.5 read from T0547.t06.many.frag # found chain 1a73A in training set T0547 587 :KQKKHILGE 1a73A 6 :AQILAVIDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=108314 # 1aquA.587.272 read from T0547.t06.many.frag # found chain 1aquA in training set T0547 587 :KQKKHILGE 1aquA 271 :ALRERFDEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=108315 # 1sczA.587.209 read from T0547.t06.many.frag # found chain 1sczA in template set T0547 587 :KQKKHILGE 1sczA 381 :RESVGFLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108316 # 1twfF.587.87 read from T0547.t06.many.frag # found chain 1twfF in template set T0547 587 :KQKKHILGE 1twfF 88 :YERARILGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108317 # 1u8xX.587.443 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 587 :KQKKHILGE 1u8xX 421 :RVARLILED Number of specific fragments extracted= 1 number of extra gaps= 0 total=108318 # 2dpmA.587.216 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 587 :KQKKHILGE 2dpmA 217 :ADQVRLRDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108319 # 1ntyA.587.293 read from T0547.t06.many.frag # found chain 1ntyA in training set T0547 587 :KQKKHILGE 1ntyA 1518 :ENKQDWIKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=108320 # 1s29A.587.8 read from T0547.t06.many.frag # found chain 1s29A in training set T0547 587 :KQKKHILGE 1s29A 9 :ENKQKLQKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108321 # 1ngkA.587.106 read from T0547.t06.many.frag # found chain 1ngkA in template set T0547 587 :KQKKHILGE 1ngkA 107 :EHRRELLDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108322 # 2eucA.587.86 read from T0547.t06.many.frag # found chain 2eucA in template set T0547 587 :KQKKHILGE 2eucA 87 :DMFETSKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=108323 # 1qysA.587.57 read from T0547.t06.many.frag # found chain 1qysA in template set T0547 587 :KQKKHILGE 1qysA 58 :KEAEKFAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108324 # 1c3cA.587.367 read from T0547.t06.many.frag # found chain 1c3cA in training set T0547 587 :KQKKHILGE 1c3cA 369 :KEAYDIVQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108325 # 1vflA.587.336 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 587 :KQKKHILGE 1vflA 335 :DEKKELLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108326 # 1vkpA.587.329 read from T0547.t06.many.frag # found chain 1vkpA in training set T0547 587 :KQKKHILGE 1vkpA 330 :IRDKEAIRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108327 # 3cla.587.194 read from T0547.t06.many.frag # found chain 3cla in training set T0547 587 :KQKKHILGE 3cla 201 :FHVARFINR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108328 # 1t0tV.587.161 read from T0547.t06.many.frag # found chain 1t0tV in training set T0547 587 :KQKKHILGE 1t0tV 162 :EQRRELMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108329 # 1x9zA.587.147 read from T0547.t06.many.frag # found chain 1x9zA in template set T0547 587 :KQKKHILGE 1x9zA 575 :AQAITLLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108330 # 1jo0A.587.56 read from T0547.t06.many.frag # found chain 1jo0A in training set T0547 587 :KQKKHILGE 1jo0A 58 :ETKQLIINA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108331 # 1l9vA.587.199 read from T0547.t06.many.frag # found chain 1l9vA in template set T0547 587 :KQKKHILGE 1l9vA 200 :VHVKELVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108332 # 1pmmA.587.431 read from T0547.t06.many.frag # found chain 1pmmA in template set T0547 587 :KQKKHILGE 1pmmA 432 :DFAELLLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=108333 # 1tr0A.587.23 read from T0547.t06.many.frag # found chain 1tr0A in training set T0547 587 :KQKKHILGE 1tr0A 24 :EQIDNYIND Number of specific fragments extracted= 1 number of extra gaps= 0 total=108334 # 1x75A.587.106 read from T0547.t06.many.frag # found chain 1x75A in template set T0547 587 :KQKKHILGE 1x75A 469 :LEHEKLLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108335 # 1jh6A.587.129 read from T0547.t06.many.frag # found chain 1jh6A in training set T0547 587 :KQKKHILGE 1jh6A 130 :EEKKNAQEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108336 # 1ak0.587.166 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 587 :KQKKHILGE 1ak0 167 :SDAESWAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108337 # 1pg4A.587.573 read from T0547.t06.many.frag # found chain 1pg4A in training set T0547 587 :KQKKHILGE 1pg4A 574 :ELYAEVRNW Number of specific fragments extracted= 1 number of extra gaps= 0 total=108338 # 1w6kA.587.309 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 587 :KQKKHILGE 1w6kA 310 :HLRQRAVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108339 # 1cfr.587.195 read from T0547.t06.many.frag # found chain 1cfr in template set T0547 587 :KQKKHILGE 1cfr 196 :DRRLQLAHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108340 # 2bfwA.587.182 read from T0547.t06.many.frag # found chain 2bfwA in training set T0547 587 :KQKKHILGE 2bfwA 396 :SDLSKFREN Number of specific fragments extracted= 1 number of extra gaps= 0 total=108341 # 1otjA.588.216 read from T0547.t06.many.frag # found chain 1otjA in template set T0547 588 :QKKHILGEL 1otjA 217 :ESEALLSFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108342 # 1zx1A.588.199 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 588 :QKKHILGEL 1zx1A 199 :ERKGMVAAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=108343 # 1a73A.588.6 read from T0547.t06.many.frag # found chain 1a73A in training set T0547 588 :QKKHILGEL 1a73A 7 :QILAVIDSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=108344 # 1sczA.588.210 read from T0547.t06.many.frag # found chain 1sczA in template set T0547 588 :QKKHILGEL 1sczA 382 :ESVGFLVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108345 # 1twfF.588.88 read from T0547.t06.many.frag # found chain 1twfF in template set T0547 588 :QKKHILGEL 1twfF 89 :ERARILGTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108346 # 1u8xX.588.444 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 588 :QKKHILGEL 1u8xX 422 :VARLILEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108347 # 1ntyA.588.294 read from T0547.t06.many.frag # found chain 1ntyA in training set T0547 588 :QKKHILGEL 1ntyA 1519 :NKQDWIKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108348 # 2dpmA.588.217 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 588 :QKKHILGEL 2dpmA 218 :DQVRLRDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108349 # 1qysA.588.58 read from T0547.t06.many.frag # found chain 1qysA in template set T0547 588 :QKKHILGEL 1qysA 59 :EAEKFAAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108350 # 1s29A.588.9 read from T0547.t06.many.frag # found chain 1s29A in training set T0547 588 :QKKHILGEL 1s29A 10 :NKQKLQKQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108351 # 3cla.588.195 read from T0547.t06.many.frag # found chain 3cla in training set T0547 588 :QKKHILGEL 3cla 202 :HVARFINRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108352 # 1c3cA.588.368 read from T0547.t06.many.frag # found chain 1c3cA in training set T0547 588 :QKKHILGEL 1c3cA 370 :EAYDIVQRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=108353 # 1aquA.588.273 read from T0547.t06.many.frag # found chain 1aquA in training set T0547 588 :QKKHILGEL 1aquA 272 :LRERFDEHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108354 # 1ngkA.588.107 read from T0547.t06.many.frag # found chain 1ngkA in template set T0547 588 :QKKHILGEL 1ngkA 108 :HRRELLDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108355 # 1vflA.588.337 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 588 :QKKHILGEL 1vflA 336 :EKKELLDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108356 # 1x9zA.588.148 read from T0547.t06.many.frag # found chain 1x9zA in template set T0547 588 :QKKHILGEL 1x9zA 576 :QAITLLADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108357 # 1vkpA.588.330 read from T0547.t06.many.frag # found chain 1vkpA in training set T0547 588 :QKKHILGEL 1vkpA 331 :RDKEAIRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108358 # 1tr0A.588.24 read from T0547.t06.many.frag # found chain 1tr0A in training set T0547 588 :QKKHILGEL 1tr0A 25 :QIDNYINDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108359 # 1pmmA.588.432 read from T0547.t06.many.frag # found chain 1pmmA in template set T0547 588 :QKKHILGEL 1pmmA 433 :FAELLLEDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108360 # 1wmhA.588.65 read from T0547.t06.many.frag # found chain 1wmhA in training set T0547 588 :QKKHILGEL 1wmhA 76 :ELEEAFRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108361 # 1jo0A.588.57 read from T0547.t06.many.frag # found chain 1jo0A in training set T0547 588 :QKKHILGEL 1jo0A 59 :TKQLIINAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108362 # 1l9vA.588.200 read from T0547.t06.many.frag # found chain 1l9vA in template set T0547 588 :QKKHILGEL 1l9vA 201 :HVKELVAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108363 # 2ajtA.588.224 read from T0547.t06.many.frag # found chain 2ajtA in template set T0547 588 :QKKHILGEL 2ajtA 225 :DVNALVDEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108364 # 2bfwA.588.183 read from T0547.t06.many.frag # found chain 2bfwA in training set T0547 588 :QKKHILGEL 2bfwA 397 :DLSKFRENC Number of specific fragments extracted= 1 number of extra gaps= 0 total=108365 # 1jh6A.588.130 read from T0547.t06.many.frag # found chain 1jh6A in training set T0547 588 :QKKHILGEL 1jh6A 131 :EKKNAQEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108366 # 3fapB.588.77 read from T0547.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0547)K589 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)T187 Warning: unaligning (T0547)K590 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)T187 Warning: unaligning (T0547)I592 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)W190 Warning: unaligning (T0547)L593 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)W190 T0547 588 :Q 3fapB 185 :D T0547 591 :H 3fapB 188 :Q T0547 594 :GEL 3fapB 191 :DLY Number of specific fragments extracted= 3 number of extra gaps= 2 total=108369 # 2eucA.588.87 read from T0547.t06.many.frag # found chain 2eucA in template set T0547 588 :QKKHILGEL 2eucA 88 :MFETSKANA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108370 # 1w23A.588.307 read from T0547.t06.many.frag # found chain 1w23A in training set T0547 588 :QKKHILGEL 1w23A 308 :LNQQFLAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108371 # 1ak0.588.167 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 588 :QKKHILGEL 1ak0 168 :DAESWAKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108372 # 1w6kA.588.310 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 588 :QKKHILGEL 1w6kA 311 :LRQRAVQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108373 # 1otjA.589.217 read from T0547.t06.many.frag # found chain 1otjA in template set T0547 589 :KKHILGELY 1otjA 218 :SEALLSFLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108374 # 1a73A.589.7 read from T0547.t06.many.frag # found chain 1a73A in training set T0547 589 :KKHILGELY 1a73A 8 :ILAVIDSWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108375 # 1zx1A.589.200 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 589 :KKHILGELY 1zx1A 200 :RKGMVAAWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=108376 # 1sczA.589.211 read from T0547.t06.many.frag # found chain 1sczA in template set T0547 589 :KKHILGELY 1sczA 383 :SVGFLVTIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108377 # 2dpmA.589.218 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 589 :KKHILGELY 2dpmA 219 :QVRLRDAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108378 # 1aquA.589.274 read from T0547.t06.many.frag # found chain 1aquA in training set T0547 589 :KKHILGELY 1aquA 273 :RERFDEHYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108379 # 1u8xX.589.445 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 589 :KKHILGELY 1u8xX 423 :ARLILEDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108380 # 1twfF.589.89 read from T0547.t06.many.frag # found chain 1twfF in template set T0547 589 :KKHILGELY 1twfF 90 :RARILGTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108381 # 1ntyA.589.295 read from T0547.t06.many.frag # found chain 1ntyA in training set T0547 589 :KKHILGELY 1ntyA 1520 :KQDWIKHIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108382 # 1qysA.589.59 read from T0547.t06.many.frag # found chain 1qysA in template set T0547 589 :KKHILGELY 1qysA 60 :AEKFAAILI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108383 # 2eucA.589.88 read from T0547.t06.many.frag # found chain 2eucA in template set T0547 589 :KKHILGELY 2eucA 89 :FETSKANAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=108384 # 1s29A.589.10 read from T0547.t06.many.frag # found chain 1s29A in training set T0547 589 :KKHILGELY 1s29A 11 :KQKLQKQVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108385 # 1vkpA.589.331 read from T0547.t06.many.frag # found chain 1vkpA in training set T0547 589 :KKHILGELY 1vkpA 332 :DKEAIRVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=108386 # 3cla.589.196 read from T0547.t06.many.frag # found chain 3cla in training set T0547 589 :KKHILGELY 3cla 203 :VARFINRLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108387 # 1ngkA.589.108 read from T0547.t06.many.frag # found chain 1ngkA in template set T0547 589 :KKHILGELY 1ngkA 109 :RRELLDYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108388 # 1c3cA.589.369 read from T0547.t06.many.frag # found chain 1c3cA in training set T0547 589 :KKHILGELY 1c3cA 371 :AYDIVQRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108389 # 1vflA.589.338 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 589 :KKHILGELY 1vflA 337 :KKELLDLLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108390 # 1wmhA.589.66 read from T0547.t06.many.frag # found chain 1wmhA in training set T0547 589 :KKHILGELY 1wmhA 77 :LEEAFRLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108391 # 1tr0A.589.25 read from T0547.t06.many.frag # found chain 1tr0A in training set T0547 589 :KKHILGELY 1tr0A 26 :IDNYINDYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108392 # 1x9zA.589.149 read from T0547.t06.many.frag # found chain 1x9zA in template set T0547 589 :KKHILGELY 1x9zA 577 :AITLLADVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108393 # 1pmmA.589.433 read from T0547.t06.many.frag # found chain 1pmmA in template set T0547 589 :KKHILGELY 1pmmA 434 :AELLLEDYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108394 # 1jo0A.589.58 read from T0547.t06.many.frag # found chain 1jo0A in training set T0547 589 :KKHILGELY 1jo0A 60 :KQLIINAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108395 # 1w6kA.589.311 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 589 :KKHILGELY 1w6kA 312 :RQRAVQKLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108396 # 2ajtA.589.225 read from T0547.t06.many.frag # found chain 2ajtA in template set T0547 589 :KKHILGELY 2ajtA 226 :VNALVDEYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108397 # 2bfwA.589.184 read from T0547.t06.many.frag # found chain 2bfwA in training set T0547 589 :KKHILGELY 2bfwA 398 :LSKFRENCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108398 # 1x75A.589.108 read from T0547.t06.many.frag # found chain 1x75A in template set T0547 589 :KKHILGELY 1x75A 471 :HEKLLDEYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108399 # 1xp8A.589.331 read from T0547.t06.many.frag # found chain 1xp8A in template set T0547 589 :KKHILGELY 1xp8A 329 :EQEIRDRVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=108400 # 1jh6A.589.131 read from T0547.t06.many.frag # found chain 1jh6A in training set T0547 589 :KKHILGELY 1jh6A 132 :KKNAQEKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108401 # 2mhr.589.95 read from T0547.t06.many.frag # found chain 2mhr in training set T0547 589 :KKHILGELY 2mhr 96 :VDYCKEWLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108402 # 3fapB.589.78 read from T0547.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0547)K589 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)T187 Warning: unaligning (T0547)K590 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)T187 Warning: unaligning (T0547)I592 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)W190 Warning: unaligning (T0547)L593 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)W190 T0547 591 :H 3fapB 188 :Q T0547 594 :GELY 3fapB 191 :DLYY Number of specific fragments extracted= 2 number of extra gaps= 2 total=108404 # 1otjA.590.218 read from T0547.t06.many.frag # found chain 1otjA in template set T0547 590 :KHILGELYL 1otjA 219 :EALLSFLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108405 # 1a73A.590.8 read from T0547.t06.many.frag # found chain 1a73A in training set T0547 590 :KHILGELYL 1a73A 9 :LAVIDSWEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108406 # 1zx1A.590.201 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 590 :KHILGELYL 1zx1A 201 :KGMVAAWSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108407 # 2dpmA.590.219 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 590 :KHILGELYL 2dpmA 220 :VRLRDAFKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108408 # 1sczA.590.212 read from T0547.t06.many.frag # found chain 1sczA in template set T0547 590 :KHILGELYL 1sczA 384 :VGFLVTIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108409 # 1u8xX.590.446 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 590 :KHILGELYL 1u8xX 424 :RLILEDLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108410 # 1ntyA.590.296 read from T0547.t06.many.frag # found chain 1ntyA in training set T0547 590 :KHILGELYL 1ntyA 1521 :QDWIKHIRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108411 # 1twfF.590.90 read from T0547.t06.many.frag # found chain 1twfF in template set T0547 590 :KHILGELYL 1twfF 91 :ARILGTRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108412 # 3cla.590.197 read from T0547.t06.many.frag # found chain 3cla in training set T0547 590 :KHILGELYL 3cla 204 :ARFINRLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108413 # 1qysA.590.60 read from T0547.t06.many.frag # found chain 1qysA in template set T0547 590 :KHILGELYL 1qysA 61 :EKFAAILIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108414 # 2eucA.590.89 read from T0547.t06.many.frag # found chain 2eucA in template set T0547 590 :KHILGELYL 2eucA 90 :ETSKANAHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108415 # 1aquA.590.275 read from T0547.t06.many.frag # found chain 1aquA in training set T0547 590 :KHILGELYL 1aquA 274 :ERFDEHYKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108416 # 1vkpA.590.332 read from T0547.t06.many.frag # found chain 1vkpA in training set T0547 590 :KHILGELYL 1vkpA 333 :KEAIRVLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108417 # 2ajtA.590.226 read from T0547.t06.many.frag # found chain 2ajtA in template set T0547 590 :KHILGELYL 2ajtA 227 :NALVDEYES Number of specific fragments extracted= 1 number of extra gaps= 0 total=108418 # 1s29A.590.11 read from T0547.t06.many.frag # found chain 1s29A in training set T0547 590 :KHILGELYL 1s29A 12 :QKLQKQVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108419 # 1x9zA.590.150 read from T0547.t06.many.frag # found chain 1x9zA in template set T0547 590 :KHILGELYL 1x9zA 578 :ITLLADVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=108420 # 1ngkA.590.109 read from T0547.t06.many.frag # found chain 1ngkA in template set T0547 590 :KHILGELYL 1ngkA 110 :RELLDYLEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=108421 # 1pmmA.590.434 read from T0547.t06.many.frag # found chain 1pmmA in template set T0547 590 :KHILGELYL 1pmmA 435 :ELLLEDYKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108422 # 1tr0A.590.26 read from T0547.t06.many.frag # found chain 1tr0A in training set T0547 590 :KHILGELYL 1tr0A 27 :DNYINDYTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=108423 # 2bfwA.590.185 read from T0547.t06.many.frag # found chain 2bfwA in training set T0547 590 :KHILGELYL 2bfwA 399 :SKFRENCKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108424 # 1jo0A.590.59 read from T0547.t06.many.frag # found chain 1jo0A in training set T0547 590 :KHILGELYL 1jo0A 61 :QLIINAIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108425 # 1xp8A.590.332 read from T0547.t06.many.frag # found chain 1xp8A in template set T0547 590 :KHILGELYL 1xp8A 330 :QEIRDRVMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108426 # 1vflA.590.339 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 590 :KHILGELYL 1vflA 338 :KELLDLLYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108427 # 1ylqA.590.53 read from T0547.t06.many.frag # found chain 1ylqA in template set T0547 590 :KHILGELYL 1ylqA 51 :LEFFGKITK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108428 # 1c3cA.590.370 read from T0547.t06.many.frag # found chain 1c3cA in training set T0547 590 :KHILGELYL 1c3cA 372 :YDIVQRNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108429 # 1ak0.590.169 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 590 :KHILGELYL 1ak0 170 :ESWAKTLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108430 # 2b8iA.590.64 read from T0547.t06.many.frag # found chain 2b8iA in training set T0547 590 :KHILGELYL 2b8iA 65 :SNAVDSVVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108431 # 1wmhA.590.67 read from T0547.t06.many.frag # found chain 1wmhA in training set T0547 590 :KHILGELYL 1wmhA 78 :EEAFRLYEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108432 # 1w6kA.590.312 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 590 :KHILGELYL 1w6kA 313 :QRAVQKLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108433 # 1x75A.590.109 read from T0547.t06.many.frag # found chain 1x75A in template set T0547 590 :KHILGELYL 1x75A 472 :EKLLDEYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108434 # 1otjA.591.219 read from T0547.t06.many.frag # found chain 1otjA in template set T0547 591 :HILGELYLF 1otjA 220 :ALLSFLFAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=108435 # 1a73A.591.9 read from T0547.t06.many.frag # found chain 1a73A in training set T0547 591 :HILGELYLF 1a73A 10 :AVIDSWEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=108436 # 1zx1A.591.202 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 591 :HILGELYLF 1zx1A 202 :GMVAAWSQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108437 # 2dpmA.591.220 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 591 :HILGELYLF 2dpmA 221 :RLRDAFKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108438 # 1u8xX.591.447 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 591 :HILGELYLF 1u8xX 425 :LILEDLVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108439 # 1sczA.591.213 read from T0547.t06.many.frag # found chain 1sczA in template set T0547 591 :HILGELYLF 1sczA 385 :GFLVTIKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108440 # 2eucA.591.90 read from T0547.t06.many.frag # found chain 2eucA in template set T0547 591 :HILGELYLF 2eucA 91 :TSKANAHAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108441 # 1vkpA.591.333 read from T0547.t06.many.frag # found chain 1vkpA in training set T0547 591 :HILGELYLF 1vkpA 334 :EAIRVLSDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108442 # 1ntyA.591.297 read from T0547.t06.many.frag # found chain 1ntyA in training set T0547 591 :HILGELYLF 1ntyA 1522 :DWIKHIREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108443 # 1twfF.591.91 read from T0547.t06.many.frag # found chain 1twfF in template set T0547 591 :HILGELYLF 1twfF 92 :RILGTRALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108444 # 1qysA.591.61 read from T0547.t06.many.frag # found chain 1qysA in template set T0547 591 :HILGELYLF 1qysA 62 :KFAAILIKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108445 # 3cla.591.198 read from T0547.t06.many.frag # found chain 3cla in training set T0547 591 :HILGELYLF 3cla 205 :RFINRLQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108446 # 1aquA.591.276 read from T0547.t06.many.frag # found chain 1aquA in training set T0547 591 :HILGELYLF 1aquA 275 :RFDEHYKQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108447 # 1ngkA.591.110 read from T0547.t06.many.frag # found chain 1ngkA in template set T0547 591 :HILGELYLF 1ngkA 111 :ELLDYLEMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108448 # 1s29A.591.12 read from T0547.t06.many.frag # found chain 1s29A in training set T0547 591 :HILGELYLF 1s29A 13 :KLQKQVEFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108449 # 1tr0A.591.27 read from T0547.t06.many.frag # found chain 1tr0A in training set T0547 591 :HILGELYLF 1tr0A 28 :NYINDYTNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108450 # 2ajtA.591.227 read from T0547.t06.many.frag # found chain 2ajtA in template set T0547 591 :HILGELYLF 2ajtA 228 :ALVDEYESC Number of specific fragments extracted= 1 number of extra gaps= 0 total=108451 # 1vflA.591.340 read from T0547.t06.many.frag # found chain 1vflA in training set T0547 591 :HILGELYLF 1vflA 339 :ELLDLLYKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108452 # 1wd6A.591.80 read from T0547.t06.many.frag # found chain 1wd6A in template set T0547 591 :HILGELYLF 1wd6A 64 :AYLEKHTAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108453 # 2bfwA.591.186 read from T0547.t06.many.frag # found chain 2bfwA in training set T0547 591 :HILGELYLF 2bfwA 400 :KFRENCKKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108454 # 1xp8A.591.333 read from T0547.t06.many.frag # found chain 1xp8A in template set T0547 591 :HILGELYLF 1xp8A 331 :EIRDRVMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108455 # 1jo0A.591.60 read from T0547.t06.many.frag # found chain 1jo0A in training set T0547 591 :HILGELYLF 1jo0A 62 :LIINAIVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108456 # 1pmmA.591.435 read from T0547.t06.many.frag # found chain 1pmmA in template set T0547 591 :HILGELYLF 1pmmA 436 :LLLEDYKAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=108457 # 1ykjA.591.362 read from T0547.t06.many.frag # found chain 1ykjA in template set T0547 591 :HILGELYLF 1ykjA 1363 :IQQTELEYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108458 # 1cqmA.591.20 read from T0547.t06.many.frag # found chain 1cqmA in training set T0547 591 :HILGELYLF 1cqmA 21 :LEKEIIQRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108459 # 1w6kA.591.313 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 591 :HILGELYLF 1w6kA 314 :RAVQKLYEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=108460 # 1su0B.591.88 read from T0547.t06.many.frag # found chain 1su0B in template set T0547 591 :HILGELYLF 1su0B 89 :ALADIFSEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=108461 # 2b8iA.591.65 read from T0547.t06.many.frag # found chain 2b8iA in training set T0547 591 :HILGELYLF 2b8iA 66 :NAVDSVVQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108462 # 1ak0.591.170 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 591 :HILGELYLF 1ak0 171 :SWAKTLVQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=108463 # 3fapB.591.80 read from T0547.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0547)I592 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)W190 Warning: unaligning (T0547)L593 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)W190 T0547 591 :H 3fapB 188 :Q T0547 594 :GELYLF 3fapB 191 :DLYYHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=108465 # 1otjA.592.220 read from T0547.t06.many.frag # found chain 1otjA in template set T0547 592 :ILGELYLFL 1otjA 221 :LLSFLFAHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108466 # 1a73A.592.10 read from T0547.t06.many.frag # found chain 1a73A in training set T0547 592 :ILGELYLFL 1a73A 11 :VIDSWEETV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108467 # 1zx1A.592.203 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 592 :ILGELYLFL 1zx1A 203 :MVAAWSQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108468 # 1u8xX.592.448 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 592 :ILGELYLFL 1u8xX 426 :ILEDLVEAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=108469 # 2dpmA.592.221 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 592 :ILGELYLFL 2dpmA 222 :LRDAFKRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=108470 # 1sczA.592.214 read from T0547.t06.many.frag # found chain 1sczA in template set T0547 592 :ILGELYLFL 1sczA 386 :FLVTIKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108471 # 2eucA.592.91 read from T0547.t06.many.frag # found chain 2eucA in template set T0547 592 :ILGELYLFL 2eucA 92 :SKANAHAFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108472 # 1vkpA.592.334 read from T0547.t06.many.frag # found chain 1vkpA in training set T0547 592 :ILGELYLFL 1vkpA 335 :AIRVLSDTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108473 # 1ylqA.592.55 read from T0547.t06.many.frag # found chain 1ylqA in template set T0547 592 :ILGELYLFL 1ylqA 53 :FFGKITKKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108474 # 1qysA.592.62 read from T0547.t06.many.frag # found chain 1qysA in template set T0547 592 :ILGELYLFL 1qysA 63 :FAAILIKVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108475 # 1wd6A.592.81 read from T0547.t06.many.frag # found chain 1wd6A in template set T0547 592 :ILGELYLFL 1wd6A 65 :YLEKHTARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108476 # 1aquA.592.277 read from T0547.t06.many.frag # found chain 1aquA in training set T0547 592 :ILGELYLFL 1aquA 276 :FDEHYKQQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=108477 # 1ntyA.592.298 read from T0547.t06.many.frag # found chain 1ntyA in training set T0547 592 :ILGELYLFL 1ntyA 1523 :WIKHIREVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108478 # 3cla.592.199 read from T0547.t06.many.frag # found chain 3cla in training set T0547 592 :ILGELYLFL 3cla 206 :FINRLQELC Number of specific fragments extracted= 1 number of extra gaps= 0 total=108479 # 1su0B.592.89 read from T0547.t06.many.frag # found chain 1su0B in template set T0547 592 :ILGELYLFL 1su0B 90 :LADIFSEMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108480 # 1ak0.592.171 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 592 :ILGELYLFL 1ak0 172 :WAKTLVQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108481 # 1twfF.592.92 read from T0547.t06.many.frag # found chain 1twfF in template set T0547 592 :ILGELYLFL 1twfF 93 :ILGTRALQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108482 # 2mhr.592.98 read from T0547.t06.many.frag # found chain 2mhr in training set T0547 592 :ILGELYLFL 2mhr 99 :CKEWLVNHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108483 # 2aalA.592.83 read from T0547.t06.many.frag # found chain 2aalA in training set T0547 592 :ILGELYLFL 2aalA 83 :FYKLLTGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108484 # 1cqmA.592.21 read from T0547.t06.many.frag # found chain 1cqmA in training set T0547 592 :ILGELYLFL 1cqmA 22 :EKEIIQRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108485 # 1tr0A.592.28 read from T0547.t06.many.frag # found chain 1tr0A in training set T0547 592 :ILGELYLFL 1tr0A 29 :YINDYTNLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108486 # 1xp8A.592.334 read from T0547.t06.many.frag # found chain 1xp8A in template set T0547 592 :ILGELYLFL 1xp8A 332 :IRDRVMAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108487 # 2bfwA.592.187 read from T0547.t06.many.frag # found chain 2bfwA in training set T0547 592 :ILGELYLFL 2bfwA 401 :FRENCKKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108488 # 1wvfA.592.493 read from T0547.t06.many.frag # found chain 1wvfA in training set Warning: unaligning (T0547)F599 (1wvfA)V502 because G (3-10) conformation "forbidden" or filtered. T0547 592 :ILGELYL 1wvfA 495 :EHAIKRA T0547 600 :L 1wvfA 503 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=108490 # 1ykjA.592.363 read from T0547.t06.many.frag # found chain 1ykjA in template set T0547 592 :ILGELYLFL 1ykjA 1364 :QQTELEYYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108491 # 1ngkA.592.111 read from T0547.t06.many.frag # found chain 1ngkA in template set T0547 592 :ILGELYLFL 1ngkA 112 :LLDYLEMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108492 # 1u61A.592.120 read from T0547.t06.many.frag # found chain 1u61A in template set T0547 592 :ILGELYLFL 1u61A 118 :IVYKAIAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108493 # 2f5tX.592.117 read from T0547.t06.many.frag # found chain 2f5tX in training set T0547 592 :ILGELYLFL 2f5tX 227 :QYSLIIEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108494 # 1l9vA.592.204 read from T0547.t06.many.frag # found chain 1l9vA in template set T0547 592 :ILGELYLFL 1l9vA 205 :LVAELRWQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108495 # 1w6kA.592.314 read from T0547.t06.many.frag # found chain 1w6kA in template set T0547 592 :ILGELYLFL 1w6kA 315 :AVQKLYEHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108496 # 1otjA.593.221 read from T0547.t06.many.frag # found chain 1otjA in template set T0547 593 :LGELYLFLN 1otjA 222 :LSFLFAHIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108497 # 1a73A.593.11 read from T0547.t06.many.frag # found chain 1a73A in training set T0547 593 :LGELYLFLN 1a73A 12 :IDSWEETVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108498 # 1zx1A.593.204 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 593 :LGELYLFLN 1zx1A 204 :VAAWSQRLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108499 # 2dpmA.593.222 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 593 :LGELYLFLN 2dpmA 223 :RDAFKRLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108500 # 1u8xX.593.449 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 593 :LGELYLFLN 1u8xX 427 :LEDLVEANK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108501 # 1vkpA.593.335 read from T0547.t06.many.frag # found chain 1vkpA in training set T0547 593 :LGELYLFLN 1vkpA 336 :IRVLSDTFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=108502 # 1sczA.593.215 read from T0547.t06.many.frag # found chain 1sczA in template set T0547 593 :LGELYLFLN 1sczA 387 :LVTIKELLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108503 # 3cla.593.200 read from T0547.t06.many.frag # found chain 3cla in training set Warning: unaligning (T0547)N601 (3cla)N215 because G (3-10) conformation "forbidden" or filtered. T0547 593 :LGELYLFL 3cla 207 :INRLQELC Number of specific fragments extracted= 1 number of extra gaps= 1 total=108504 # 1wd6A.593.82 read from T0547.t06.many.frag # found chain 1wd6A in template set T0547 593 :LGELYLFLN 1wd6A 66 :LEKHTARLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108505 # 2eucA.593.92 read from T0547.t06.many.frag # found chain 2eucA in template set Warning: unaligning (T0547)N601 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2eucA)A107 T0547 593 :LGELYLFL 2eucA 93 :KANAHAFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108506 # 1aquA.593.278 read from T0547.t06.many.frag # found chain 1aquA in training set T0547 593 :LGELYLFLN 1aquA 277 :DEHYKQQMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108507 # 1su0B.593.90 read from T0547.t06.many.frag # found chain 1su0B in template set T0547 593 :LGELYLFLN 1su0B 91 :ADIFSEMVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108508 # 1ylqA.593.56 read from T0547.t06.many.frag # found chain 1ylqA in template set T0547 593 :LGELYLFLN 1ylqA 54 :FGKITKKFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108509 # 1qysA.593.63 read from T0547.t06.many.frag # found chain 1qysA in template set T0547 593 :LGELYLFLN 1qysA 64 :AAILIKVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108510 # 1ak0.593.172 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 593 :LGELYLFLN 1ak0 173 :AKTLVQNIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108511 # 1k8qA.593.331 read from T0547.t06.many.frag # found chain 1k8qA in template set T0547 593 :LGELYLFLN 1k8qA 332 :VDLLLSKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=108512 # 1ntyA.593.299 read from T0547.t06.many.frag # found chain 1ntyA in training set T0547 593 :LGELYLFLN 1ntyA 1524 :IKHIREVIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108513 # 2mhr.593.99 read from T0547.t06.many.frag # found chain 2mhr in training set T0547 593 :LGELYLFLN 2mhr 100 :KEWLVNHIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108514 # 2aalA.593.84 read from T0547.t06.many.frag # found chain 2aalA in training set T0547 593 :LGELYLFLN 2aalA 84 :YKLLTGALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108515 # 1cqmA.593.22 read from T0547.t06.many.frag # found chain 1cqmA in training set T0547 593 :LGELYLFLN 1cqmA 23 :KEIIQRALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108516 # 1tr0A.593.29 read from T0547.t06.many.frag # found chain 1tr0A in training set T0547 593 :LGELYLFLN 1tr0A 30 :INDYTNLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108517 # 1ds1A.593.247 read from T0547.t06.many.frag # found chain 1ds1A in training set T0547 593 :LGELYLFLN 1ds1A 248 :VAALSKALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108518 # 1twfF.593.93 read from T0547.t06.many.frag # found chain 1twfF in template set T0547 593 :LGELYLFLN 1twfF 94 :LGTRALQIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=108519 # 1gxqA.593.75 read from T0547.t06.many.frag # found chain 1gxqA in template set T0547 593 :LGELYLFLN 1gxqA 199 :IRRLRKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108520 # 1ykjA.593.364 read from T0547.t06.many.frag # found chain 1ykjA in template set T0547 593 :LGELYLFLN 1ykjA 1365 :QTELEYYLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108521 # 1u61A.593.121 read from T0547.t06.many.frag # found chain 1u61A in template set T0547 593 :LGELYLFLN 1u61A 119 :VYKAIAVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108522 # 1pg4A.593.579 read from T0547.t06.many.frag # found chain 1pg4A in training set Warning: unaligning (T0547)N601 (1pg4A)G588 because Y (epsilon') conformation "forbidden" or filtered. T0547 593 :LGELYLFL 1pg4A 580 :RNWVRKEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=108523 # 2bfwA.593.188 read from T0547.t06.many.frag # found chain 2bfwA in training set T0547 593 :LGELYLFLN 2bfwA 402 :RENCKKRAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=108524 # 1rq2A.593.278 read from T0547.t06.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)N601 (1rq2A)H284 because P (beta_P) conformation "forbidden" or filtered. T0547 593 :LGELYLFL 1rq2A 276 :ASLVQDAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=108525 # 1wvfA.593.494 read from T0547.t06.many.frag # found chain 1wvfA in training set Warning: unaligning (T0547)L600 (1wvfA)D503 because D (zeta) conformation "forbidden" or filtered. T0547 593 :LGELYLF 1wvfA 496 :HAIKRAV T0547 601 :N 1wvfA 504 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=108527 # 1a73A.594.12 read from T0547.t06.many.frag # found chain 1a73A in training set T0547 594 :GELYLFLND 1a73A 13 :DSWEETVGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108528 # 1otjA.594.222 read from T0547.t06.many.frag # found chain 1otjA in template set Warning: unaligning (T0547)D602 (1otjA)K231 because P (beta_P) conformation "forbidden" or filtered. T0547 594 :GELYLFLN 1otjA 223 :SFLFAHIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=108529 # 1zx1A.594.205 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 594 :GELYLFLND 1zx1A 205 :AAWSQRLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108530 # 2eucA.594.93 read from T0547.t06.many.frag # found chain 2eucA in template set Warning: unaligning (T0547)N601 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2eucA)A107 T0547 594 :GELYLFL 2eucA 94 :ANAHAFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108531 # 1wd6A.594.83 read from T0547.t06.many.frag # found chain 1wd6A in template set T0547 594 :GELYLFLND 1wd6A 67 :EKHTARLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=108532 # 1aquA.594.279 read from T0547.t06.many.frag # found chain 1aquA in training set T0547 594 :GELYLFLND 1aquA 278 :EHYKQQMKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108533 # 2dpmA.594.223 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 594 :GELYLFLND 2dpmA 224 :DAFKRLSDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108534 # 1vkpA.594.336 read from T0547.t06.many.frag # found chain 1vkpA in training set T0547 594 :GELYLFLND 1vkpA 337 :RVLSDTFPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=108535 # 1ylqA.594.57 read from T0547.t06.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)D602 (1ylqA)D63 because L (left) conformation "forbidden" or filtered. T0547 594 :GELYLFLN 1ylqA 55 :GKITKKFF Number of specific fragments extracted= 1 number of extra gaps= 1 total=108536 # 1u8xX.594.450 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 594 :GELYLFLND 1u8xX 428 :EDLVEANKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108537 # 1sczA.594.216 read from T0547.t06.many.frag # found chain 1sczA in template set Warning: unaligning (T0547)D602 (1sczA)D396 because D (zeta) conformation "forbidden" or filtered. T0547 594 :GELYLFLN 1sczA 388 :VTIKELLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=108538 # 1k8qA.594.332 read from T0547.t06.many.frag # found chain 1k8qA in template set T0547 594 :GELYLFLND 1k8qA 333 :DLLLSKLPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=108539 # 1su0B.594.91 read from T0547.t06.many.frag # found chain 1su0B in template set T0547 594 :GELYLFLND 1su0B 92 :DIFSEMVQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108540 # 3cla.594.201 read from T0547.t06.many.frag # found chain 3cla in training set T0547 594 :GELYLFLND 3cla 208 :NRLQELCNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=108541 # 1gxqA.594.76 read from T0547.t06.many.frag # found chain 1gxqA in template set T0547 594 :GELYLFLND 1gxqA 200 :RRLRKALEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=108542 # 1uvjA.594.591 read from T0547.t06.many.frag # found chain 1uvjA in template set T0547 594 :GELYLFLND 1uvjA 592 :KRDTLELSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108543 # 1qysA.594.64 read from T0547.t06.many.frag # found chain 1qysA in template set T0547 594 :GELYLFLND 1qysA 65 :AILIKVFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108544 # 1ak0.594.173 read from T0547.t06.many.frag # found chain 1ak0 in training set T0547 594 :GELYLFLND 1ak0 174 :KTLVQNIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=108545 # 1wvfA.594.495 read from T0547.t06.many.frag # found chain 1wvfA in training set Warning: unaligning (T0547)F599 (1wvfA)V502 because G (3-10) conformation "forbidden" or filtered. T0547 594 :GELYL 1wvfA 497 :AIKRA T0547 600 :LND 1wvfA 503 :DPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=108547 # 1cqmA.594.23 read from T0547.t06.many.frag # found chain 1cqmA in training set T0547 594 :GELYLFLND 1cqmA 24 :EIIQRALEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=108548 # 1y9lA.594.77 read from T0547.t06.many.frag # found chain 1y9lA in training set T0547 594 :GELYLFLND 1y9lA 105 :DKLFSMLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108549 # 1twfF.594.94 read from T0547.t06.many.frag # found chain 1twfF in template set T0547 594 :GELYLFLND 1twfF 95 :GTRALQISM Number of specific fragments extracted= 1 number of extra gaps= 0 total=108550 # 1ds1A.594.248 read from T0547.t06.many.frag # found chain 1ds1A in training set T0547 594 :GELYLFLND 1ds1A 249 :AALSKALDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108551 # 2f5tX.594.119 read from T0547.t06.many.frag # found chain 2f5tX in training set T0547 594 :GELYLFLND 2f5tX 229 :SLIIEIFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108552 # 1v0dA.594.193 read from T0547.t06.many.frag # found chain 1v0dA in template set Warning: unaligning (T0547)G594 (1v0dA)G194 because H (helix) conformation "forbidden" or filtered. T0547 595 :ELYLFLND 1v0dA 195 :SMCQKLKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=108553 # 1l9vA.594.206 read from T0547.t06.many.frag # found chain 1l9vA in template set T0547 594 :GELYLFLND 1l9vA 207 :AELRWQYNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108554 # 1u61A.594.122 read from T0547.t06.many.frag # found chain 1u61A in template set Warning: unaligning (T0547)D602 because last residue in template chain is (1u61A)E128 T0547 594 :GELYLFLN 1u61A 120 :YKAIAVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108555 # 2a2fX.594.282 read from T0547.t06.many.frag # found chain 2a2fX in template set T0547 594 :GELYLFLND 2a2fX 283 :MQCEFFAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=108556 # 1tr0A.594.30 read from T0547.t06.many.frag # found chain 1tr0A in training set T0547 594 :GELYLFLND 1tr0A 31 :NDYTNLLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108557 # 1rq2A.594.279 read from T0547.t06.many.frag # found chain 1rq2A in template set T0547 594 :GELYLFLND 1rq2A 277 :SLVQDAAHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=108558 # 1a73A.595.13 read from T0547.t06.many.frag # found chain 1a73A in training set T0547 595 :ELYLFLNDN 1a73A 14 :SWEETVGQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108559 # 1otjA.595.223 read from T0547.t06.many.frag # found chain 1otjA in template set T0547 595 :ELYLFLNDN 1otjA 224 :FLFAHITKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=108560 # 1vkpA.595.337 read from T0547.t06.many.frag # found chain 1vkpA in training set T0547 595 :ELYLFLNDN 1vkpA 338 :VLSDTFPHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=108561 # 1zx1A.595.206 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 595 :ELYLFLNDN 1zx1A 206 :AWSQRLQTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108562 # 1aquA.595.280 read from T0547.t06.many.frag # found chain 1aquA in training set T0547 595 :ELYLFLNDN 1aquA 279 :HYKQQMKDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=108563 # 1wd6A.595.84 read from T0547.t06.many.frag # found chain 1wd6A in template set T0547 595 :ELYLFLNDN 1wd6A 68 :KHTARLKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108564 # 1k8qA.595.333 read from T0547.t06.many.frag # found chain 1k8qA in template set T0547 595 :ELYLFLNDN 1k8qA 334 :LLLSKLPNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108565 # 1ylqA.595.58 read from T0547.t06.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)D602 (1ylqA)D63 because L (left) conformation "forbidden" or filtered. T0547 595 :ELYLFLN 1ylqA 56 :KITKKFF T0547 603 :N 1ylqA 64 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=108567 # 1y9lA.595.78 read from T0547.t06.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)N603 (1y9lA)G114 because S (epsilon) conformation "forbidden" or filtered. T0547 595 :ELYLFLND 1y9lA 106 :KLFSMLKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=108568 # 2dpmA.595.224 read from T0547.t06.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)N603 (2dpmA)G233 because T (delta_L) conformation "forbidden" or filtered. T0547 595 :ELYLFLND 2dpmA 225 :AFKRLSDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=108569 # 1su0B.595.92 read from T0547.t06.many.frag # found chain 1su0B in template set Warning: unaligning (T0547)D602 (1su0B)G100 because T (delta_L) conformation "forbidden" or filtered. T0547 595 :ELYLFLN 1su0B 93 :IFSEMVQ T0547 603 :N 1su0B 101 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=108571 # 2eucA.595.94 read from T0547.t06.many.frag # found chain 2eucA in template set Warning: unaligning (T0547)N601 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2eucA)A107 T0547 595 :ELYLFL 2eucA 95 :NAHAFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108572 # 1sczA.595.217 read from T0547.t06.many.frag # found chain 1sczA in template set Warning: unaligning (T0547)D602 (1sczA)D396 because D (zeta) conformation "forbidden" or filtered. T0547 595 :ELYLFLN 1sczA 389 :TIKELLE T0547 603 :N 1sczA 397 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=108574 # 3cla.595.202 read from T0547.t06.many.frag # found chain 3cla in training set T0547 595 :ELYLFLNDN 3cla 209 :RLQELCNSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108575 # 1u8xX.595.451 read from T0547.t06.many.frag # found chain 1u8xX in template set T0547 595 :ELYLFLNDN 1u8xX 429 :DLVEANKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108576 # 1qcsA.595.123 read from T0547.t06.many.frag # found chain 1qcsA in template set Warning: unaligning (T0547)D602 (1qcsA)N127 because L (left) conformation "forbidden" or filtered. T0547 595 :ELYLFLN 1qcsA 120 :EFIQQFN T0547 603 :N 1qcsA 128 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=108578 # 1uvjA.595.592 read from T0547.t06.many.frag # found chain 1uvjA in template set T0547 595 :ELYLFLNDN 1uvjA 593 :RDTLELSRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108579 # 1olzA.595.310 read from T0547.t06.many.frag # found chain 1olzA in template set T0547 595 :ELYLFLNDN 1olzA 311 :TAEEVFSHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108580 # 1ak0.595.174 read from T0547.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0547)N603 (1ak0)G183 because Y (epsilon') conformation "forbidden" or filtered. T0547 595 :ELYLFLND 1ak0 175 :TLVQNIES Number of specific fragments extracted= 1 number of extra gaps= 1 total=108581 # 1gxqA.595.77 read from T0547.t06.many.frag # found chain 1gxqA in template set T0547 595 :ELYLFLNDN 1gxqA 201 :RLRKALEPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108582 # 2d0oA.595.566 read from T0547.t06.many.frag # found chain 2d0oA in template set Warning: unaligning (T0547)N603 (2d0oA)Y575 because P (beta_P) conformation "forbidden" or filtered. T0547 595 :ELYLFLND 2d0oA 567 :LVTDALAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=108583 # 1ds1A.595.249 read from T0547.t06.many.frag # found chain 1ds1A in training set T0547 595 :ELYLFLNDN 1ds1A 250 :ALSKALDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108584 # 1cqmA.595.24 read from T0547.t06.many.frag # found chain 1cqmA in training set T0547 595 :ELYLFLNDN 1cqmA 25 :IIQRALENY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108585 # 1gx5A.595.505 read from T0547.t06.many.frag # found chain 1gx5A in template set T0547 595 :ELYLFLNDN 1gx5A 506 :SVRARLLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108586 # 1rq2A.595.280 read from T0547.t06.many.frag # found chain 1rq2A in template set Warning: unaligning (T0547)N601 (1rq2A)H284 because P (beta_P) conformation "forbidden" or filtered. T0547 595 :ELYLFL 1rq2A 278 :LVQDAA T0547 602 :DN 1rq2A 285 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=108588 # 1qysA.595.65 read from T0547.t06.many.frag # found chain 1qysA in template set Warning: unaligning (T0547)N603 (1qysA)L74 because G (3-10) conformation "forbidden" or filtered. T0547 595 :ELYLFLND 1qysA 66 :ILIKVFAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=108589 # 1eyqA.595.133 read from T0547.t06.many.frag # found chain 1eyqA in template set T0547 595 :ELYLFLNDN 1eyqA 134 :KFAEAFKPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108590 # 1wvfA.595.496 read from T0547.t06.many.frag # found chain 1wvfA in training set Warning: unaligning (T0547)F599 (1wvfA)V502 because G (3-10) conformation "forbidden" or filtered. T0547 595 :ELYL 1wvfA 498 :IKRA T0547 600 :LNDN 1wvfA 503 :DPNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=108592 # 1a3aA.595.138 read from T0547.t06.many.frag # found chain 1a3aA in training set T0547 595 :ELYLFLNDN 1a3aA 139 :EVLELLAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108593 # 1l9vA.595.207 read from T0547.t06.many.frag # found chain 1l9vA in template set T0547 595 :ELYLFLNDN 1l9vA 208 :ELRWQYNKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108594 # 1a73A.596.14 read from T0547.t06.many.frag # found chain 1a73A in training set Warning: unaligning (T0547)G604 (1a73A)P23 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1a73A 15 :WEETVGQF Number of specific fragments extracted= 1 number of extra gaps= 1 total=108595 # 1otjA.596.224 read from T0547.t06.many.frag # found chain 1otjA in template set Warning: unaligning (T0547)N601 (1otjA)T230 because G (3-10) conformation "forbidden" or filtered. T0547 596 :LYLFL 1otjA 225 :LFAHI T0547 602 :DNG 1otjA 231 :KPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108597 # 1aquA.596.281 read from T0547.t06.many.frag # found chain 1aquA in training set Warning: unaligning (T0547)G604 (1aquA)T288 because G (3-10) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1aquA 280 :YKQQMKDC Number of specific fragments extracted= 1 number of extra gaps= 1 total=108598 # 1y9lA.596.79 read from T0547.t06.many.frag # found chain 1y9lA in training set T0547 596 :LYLFLNDNG 1y9lA 107 :LFSMLKDGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108599 # 1zx1A.596.207 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 596 :LYLFLNDNG 1zx1A 207 :WSQRLQTIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=108600 # 1uvjA.596.593 read from T0547.t06.many.frag # found chain 1uvjA in template set T0547 596 :LYLFLNDNG 1uvjA 594 :DTLELSRYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108601 # 1qcsA.596.124 read from T0547.t06.many.frag # found chain 1qcsA in template set Warning: unaligning (T0547)D602 (1qcsA)N127 because L (left) conformation "forbidden" or filtered. T0547 596 :LYLFLN 1qcsA 121 :FIQQFN T0547 603 :NG 1qcsA 128 :QA Number of specific fragments extracted= 2 number of extra gaps= 1 total=108603 # 1ylqA.596.59 read from T0547.t06.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)D602 (1ylqA)D63 because L (left) conformation "forbidden" or filtered. T0547 596 :LYLFLN 1ylqA 57 :ITKKFF T0547 603 :NG 1ylqA 64 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=108605 # 1olzA.596.311 read from T0547.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)G604 (1olzA)K320 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1olzA 312 :AEEVFSHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=108606 # 1k8qA.596.334 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)N603 (1k8qA)L342 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1k8qA)I343 because G (3-10) conformation "forbidden" or filtered. T0547 596 :LYLFLND 1k8qA 335 :LLSKLPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=108607 # 1wd6A.596.85 read from T0547.t06.many.frag # found chain 1wd6A in template set T0547 596 :LYLFLNDNG 1wd6A 69 :HTARLKNLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108608 # 2dpmA.596.225 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 596 :LYLFLNDNG 2dpmA 226 :FKRLSDTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108609 # 1vkpA.596.338 read from T0547.t06.many.frag # found chain 1vkpA in training set T0547 596 :LYLFLNDNG 1vkpA 339 :LSDTFPHHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=108610 # 1a3aA.596.139 read from T0547.t06.many.frag # found chain 1a3aA in training set Warning: unaligning (T0547)G604 because last residue in template chain is (1a3aA)K148 T0547 596 :LYLFLNDN 1a3aA 140 :VLELLAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108611 # 2d0oA.596.567 read from T0547.t06.many.frag # found chain 2d0oA in template set T0547 596 :LYLFLNDNG 2d0oA 568 :VTDALAHYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108612 # 1ds1A.596.250 read from T0547.t06.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)G604 (1ds1A)T259 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1ds1A 251 :LSKALDEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=108613 # 1sczA.596.218 read from T0547.t06.many.frag # found chain 1sczA in template set T0547 596 :LYLFLNDNG 1sczA 390 :IKELLEDPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108614 # 1eyqA.596.134 read from T0547.t06.many.frag # found chain 1eyqA in template set T0547 596 :LYLFLNDNG 1eyqA 135 :FAEAFKPVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=108615 # 2f5tX.596.121 read from T0547.t06.many.frag # found chain 2f5tX in training set T0547 596 :LYLFLNDNG 2f5tX 231 :IIEIFKEST Number of specific fragments extracted= 1 number of extra gaps= 0 total=108616 # 1gx5A.596.506 read from T0547.t06.many.frag # found chain 1gx5A in template set T0547 596 :LYLFLNDNG 1gx5A 507 :VRARLLSQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108617 # 3cla.596.203 read from T0547.t06.many.frag # found chain 3cla in training set T0547 596 :LYLFLNDNG 3cla 210 :LQELCNSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108618 # 1su0B.596.93 read from T0547.t06.many.frag # found chain 1su0B in template set Warning: unaligning (T0547)G604 (1su0B)E102 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1su0B 94 :FSEMVQGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=108619 # 1ak0.596.175 read from T0547.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0547)D602 (1ak0)S182 because D (zeta) conformation "forbidden" or filtered. T0547 596 :LYLFLN 1ak0 176 :LVQNIE T0547 603 :NG 1ak0 183 :GN Number of specific fragments extracted= 2 number of extra gaps= 1 total=108621 # 1cqmA.596.25 read from T0547.t06.many.frag # found chain 1cqmA in training set T0547 596 :LYLFLNDNG 1cqmA 26 :IQRALENYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108622 # 1qysA.596.66 read from T0547.t06.many.frag # found chain 1qysA in template set T0547 596 :LYLFLNDNG 1qysA 67 :LIKVFAELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108623 # 2a2fX.596.284 read from T0547.t06.many.frag # found chain 2a2fX in template set T0547 596 :LYLFLNDNG 2a2fX 285 :CEFFAASEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=108624 # 1uw4A.596.60 read from T0547.t06.many.frag # found chain 1uw4A in template set Warning: unaligning (T0547)G604 (1uw4A)V118 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1uw4A 110 :FRDRFDGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=108625 # 1v0dA.596.195 read from T0547.t06.many.frag # found chain 1v0dA in template set T0547 596 :LYLFLNDNG 1v0dA 196 :MCQKLKSVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108626 # 1u8xX.596.452 read from T0547.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0547)G604 (1u8xX)W438 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1u8xX 430 :LVEANKDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=108627 # 1u8bA.596.83 read from T0547.t06.many.frag # found chain 1u8bA in template set Warning: unaligning (T0547)G604 (1u8bA)T98 because P (beta_P) conformation "forbidden" or filtered. T0547 596 :LYLFLNDN 1u8bA 90 :ACRLLEQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=108628 # 1a73A.597.15 read from T0547.t06.many.frag # found chain 1a73A in training set Warning: unaligning (T0547)G604 (1a73A)P23 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1a73A 16 :EETVGQF T0547 605 :Y 1a73A 24 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=108630 # 1y9lA.597.80 read from T0547.t06.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)G604 (1y9lA)V115 because E (beta_S) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1y9lA 108 :FSMLKDG T0547 605 :Y 1y9lA 116 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=108632 # 1qcsA.597.125 read from T0547.t06.many.frag # found chain 1qcsA in template set Warning: unaligning (T0547)N601 (1qcsA)N126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D602 (1qcsA)N127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N603 (1qcsA)Q128 because E (beta_S) conformation "forbidden" or filtered. T0547 597 :YLFL 1qcsA 122 :IQQF T0547 604 :GY 1qcsA 129 :AF Number of specific fragments extracted= 2 number of extra gaps= 1 total=108634 # 1k8qA.597.335 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)G604 (1k8qA)I343 because G (3-10) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1k8qA 336 :LSKLPNL T0547 605 :Y 1k8qA 344 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=108636 # 1aquA.597.282 read from T0547.t06.many.frag # found chain 1aquA in training set Warning: unaligning (T0547)G604 (1aquA)T288 because G (3-10) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1aquA 281 :KQQMKDC T0547 605 :Y 1aquA 289 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=108638 # 1otjA.597.225 read from T0547.t06.many.frag # found chain 1otjA in template set T0547 597 :YLFLNDNGY 1otjA 226 :FAHITKPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108639 # 1olzA.597.312 read from T0547.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)G604 (1olzA)K320 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLNDN 1olzA 313 :EEVFSHG T0547 605 :Y 1olzA 321 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=108641 # 2f5tX.597.122 read from T0547.t06.many.frag # found chain 2f5tX in training set T0547 597 :YLFLNDNGY 2f5tX 232 :IEIFKESTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108642 # 1uw4A.597.61 read from T0547.t06.many.frag # found chain 1uw4A in template set T0547 597 :YLFLNDNGY 1uw4A 111 :RDRFDGYVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108643 # 1zx1A.597.208 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 597 :YLFLNDNGY 1zx1A 208 :SQRLQTIWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108644 # 1ylqA.597.60 read from T0547.t06.many.frag # found chain 1ylqA in template set T0547 597 :YLFLNDNGY 1ylqA 58 :TKKFFDSPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108645 # 1uvjA.597.594 read from T0547.t06.many.frag # found chain 1uvjA in template set T0547 597 :YLFLNDNGY 1uvjA 595 :TLELSRYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108646 # 2d0oA.597.568 read from T0547.t06.many.frag # found chain 2d0oA in template set Warning: unaligning (T0547)N603 (2d0oA)Y575 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (2d0oA)R576 because N (gamma') conformation "forbidden" or filtered. T0547 597 :YLFLND 2d0oA 569 :TDALAH T0547 605 :Y 2d0oA 577 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=108648 # 1eyqA.597.135 read from T0547.t06.many.frag # found chain 1eyqA in template set T0547 597 :YLFLNDNGY 1eyqA 136 :AEAFKPVNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=108649 # 2dpmA.597.226 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 597 :YLFLNDNGY 2dpmA 227 :KRLSDTGAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108650 # 1ds1A.597.251 read from T0547.t06.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)N603 (1ds1A)V258 because G (3-10) conformation "forbidden" or filtered. T0547 597 :YLFLND 1ds1A 252 :SKALDE T0547 604 :GY 1ds1A 259 :TE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108652 # 1l3kA.597.121 read from T0547.t06.many.frag # found chain 1l3kA in training set T0547 597 :YLFLNDNGY 1l3kA 122 :RDYFEQYGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108653 # 3cla.597.204 read from T0547.t06.many.frag # found chain 3cla in training set Warning: unaligning (T0547)Y605 because last residue in template chain is (3cla)K219 T0547 597 :YLFLNDNG 3cla 211 :QELCNSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108654 # 1wd6A.597.86 read from T0547.t06.many.frag # found chain 1wd6A in template set T0547 597 :YLFLNDNGY 1wd6A 70 :TARLKNLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108655 # 1tzyA.597.94 read from T0547.t06.many.frag # found chain 1tzyA in template set T0547 597 :YLFLNDNGY 1tzyA 94 :NKLLGKVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108656 # 1su0B.597.94 read from T0547.t06.many.frag # found chain 1su0B in template set Warning: unaligning (T0547)D602 (1su0B)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1su0B)E102 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLN 1su0B 95 :SEMVQ T0547 603 :N 1su0B 101 :Q T0547 605 :Y 1su0B 103 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=108659 # 1qysA.597.67 read from T0547.t06.many.frag # found chain 1qysA in template set T0547 597 :YLFLNDNGY 1qysA 68 :IKVFAELGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108660 # 1gx5A.597.507 read from T0547.t06.many.frag # found chain 1gx5A in template set T0547 597 :YLFLNDNGY 1gx5A 508 :RARLLSQGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=108661 # 1n62A.597.152 read from T0547.t06.many.frag # found chain 1n62A in training set Warning: unaligning (T0547)D602 (1n62A)G158 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1n62A)P160 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLN 1n62A 153 :AAKIN T0547 603 :N 1n62A 159 :V T0547 605 :Y 1n62A 161 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=108664 # 1vkpA.597.339 read from T0547.t06.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)N603 (1vkpA)H346 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1vkpA)S347 because P (beta_P) conformation "forbidden" or filtered. T0547 597 :YLFLND 1vkpA 340 :SDTFPH T0547 605 :Y 1vkpA 348 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=108666 # 1t95A.597.223 read from T0547.t06.many.frag # found chain 1t95A in template set T0547 597 :YLFLNDNGY 1t95A 224 :GKVAKGEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108667 # 1ak0.597.176 read from T0547.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0547)D602 (1ak0)S182 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N603 (1ak0)G183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1ak0)Y185 because G (3-10) conformation "forbidden" or filtered. T0547 597 :YLFLN 1ak0 177 :VQNIE T0547 604 :G 1ak0 184 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=108669 # 1v0dA.597.196 read from T0547.t06.many.frag # found chain 1v0dA in template set T0547 597 :YLFLNDNGY 1v0dA 197 :CQKLKSVQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=108670 # 2a2fX.597.285 read from T0547.t06.many.frag # found chain 2a2fX in template set Warning: unaligning (T0547)N603 (2a2fX)E292 because L (left) conformation "forbidden" or filtered. T0547 597 :YLFLND 2a2fX 286 :EFFAAS T0547 604 :GY 2a2fX 293 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=108672 # 2f1fA.597.135 read from T0547.t06.many.frag # found chain 2f1fA in training set T0547 597 :YLFLNDNGY 2f1fA 135 :LASIRDVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108673 # 1a73A.598.16 read from T0547.t06.many.frag # found chain 1a73A in training set Warning: unaligning (T0547)G604 (1a73A)P23 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1a73A 17 :ETVGQF T0547 605 :YL 1a73A 24 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=108675 # 1y9lA.598.81 read from T0547.t06.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)N603 (1y9lA)G114 because S (epsilon) conformation "forbidden" or filtered. T0547 598 :LFLND 1y9lA 109 :SMLKD T0547 604 :GYL 1y9lA 115 :VVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=108677 # 1uw4A.598.62 read from T0547.t06.many.frag # found chain 1uw4A in template set Warning: unaligning (T0547)G604 (1uw4A)V118 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1uw4A 112 :DRFDGY T0547 605 :YL 1uw4A 119 :FL Number of specific fragments extracted= 2 number of extra gaps= 1 total=108679 # 1olzA.598.313 read from T0547.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)G604 (1olzA)K320 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1olzA 314 :EVFSHG T0547 605 :YL 1olzA 321 :YM Number of specific fragments extracted= 2 number of extra gaps= 1 total=108681 # 1qcsA.598.126 read from T0547.t06.many.frag # found chain 1qcsA in template set T0547 598 :LFLNDNGYL 1qcsA 123 :QQFNNQAFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=108682 # 1k8qA.598.336 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)D602 (1k8qA)N341 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0547)N603 (1k8qA)L342 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLN 1k8qA 337 :SKLP T0547 604 :GYL 1k8qA 343 :IYH Number of specific fragments extracted= 2 number of extra gaps= 1 total=108684 # 2f5tX.598.123 read from T0547.t06.many.frag # found chain 2f5tX in training set T0547 598 :LFLNDNGYL 2f5tX 233 :EIFKESTLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108685 # 1aquA.598.283 read from T0547.t06.many.frag # found chain 1aquA in training set T0547 598 :LFLNDNGYL 1aquA 282 :QQMKDCTVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108686 # 1tzyA.598.95 read from T0547.t06.many.frag # found chain 1tzyA in template set Warning: unaligning (T0547)N603 (1tzyA)V100 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLND 1tzyA 95 :KLLGK T0547 604 :GYL 1tzyA 101 :TIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=108688 # 1eyqA.598.136 read from T0547.t06.many.frag # found chain 1eyqA in template set Warning: unaligning (T0547)G604 (1eyqA)N143 because E (beta_S) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1eyqA 137 :EAFKPV T0547 605 :YL 1eyqA 144 :FP Number of specific fragments extracted= 2 number of extra gaps= 1 total=108690 # 1otjA.598.226 read from T0547.t06.many.frag # found chain 1otjA in template set T0547 598 :LFLNDNGYL 1otjA 227 :AHITKPEFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108691 # 2d0oA.598.569 read from T0547.t06.many.frag # found chain 2d0oA in template set Warning: unaligning (T0547)G604 (2d0oA)R576 because N (gamma') conformation "forbidden" or filtered. T0547 598 :LFLNDN 2d0oA 570 :DALAHY T0547 605 :YL 2d0oA 577 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=108693 # 1ylqA.598.61 read from T0547.t06.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)D602 (1ylqA)D63 because L (left) conformation "forbidden" or filtered. T0547 598 :LFLN 1ylqA 59 :KKFF T0547 603 :NGYL 1ylqA 64 :SPFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108695 # 1n62A.598.153 read from T0547.t06.many.frag # found chain 1n62A in training set Warning: unaligning (T0547)D602 (1n62A)G158 because T (delta_L) conformation "forbidden" or filtered. T0547 598 :LFLN 1n62A 154 :AKIN T0547 603 :NGYL 1n62A 159 :VPFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108697 # 1bxyA.598.47 read from T0547.t06.many.frag # found chain 1bxyA in template set Warning: unaligning (T0547)N601 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bxyA)H52 Warning: unaligning (T0547)D602 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bxyA)H52 Warning: unaligning (T0547)G604 (1bxyA)V54 because E (beta_S) conformation "forbidden" or filtered. T0547 598 :LFL 1bxyA 48 :EKV T0547 603 :N 1bxyA 53 :L T0547 605 :YL 1bxyA 55 :RV Number of specific fragments extracted= 3 number of extra gaps= 2 total=108700 # 1l3kA.598.122 read from T0547.t06.many.frag # found chain 1l3kA in training set T0547 598 :LFLNDNGYL 1l3kA 123 :DYFEQYGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108701 # 2dpmA.598.227 read from T0547.t06.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)N603 (2dpmA)G233 because T (delta_L) conformation "forbidden" or filtered. T0547 598 :LFLND 2dpmA 228 :RLSDT T0547 604 :GYL 2dpmA 234 :AYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=108703 # 1vkpA.598.340 read from T0547.t06.many.frag # found chain 1vkpA in training set Warning: unaligning (T0547)G604 (1vkpA)S347 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1vkpA 341 :DTFPHH T0547 605 :YL 1vkpA 348 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=108705 # 1ftrA.598.264 read from T0547.t06.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)N603 (1ftrA)Q270 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1ftrA)G272 because T (delta_L) conformation "forbidden" or filtered. T0547 598 :LFLND 1ftrA 265 :EAACQ T0547 604 :G 1ftrA 271 :P T0547 606 :L 1ftrA 273 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=108708 # 1ds1A.598.252 read from T0547.t06.many.frag # found chain 1ds1A in training set Warning: unaligning (T0547)G604 (1ds1A)T259 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1ds1A 253 :KALDEV T0547 605 :YL 1ds1A 260 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=108710 # 1t95A.598.224 read from T0547.t06.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)D602 (1t95A)G229 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N603 (1t95A)E230 because G (3-10) conformation "forbidden" or filtered. T0547 598 :LFLN 1t95A 225 :KVAK T0547 604 :GYL 1t95A 231 :ALT Number of specific fragments extracted= 2 number of extra gaps= 1 total=108712 # 1jyhA.598.114 read from T0547.t06.many.frag # found chain 1jyhA in training set Warning: unaligning (T0547)Y605 (1jyhA)A122 because G (3-10) conformation "forbidden" or filtered. T0547 598 :LFLNDNG 1jyhA 115 :NSLLQDS T0547 606 :L 1jyhA 123 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=108714 # 1qysA.598.68 read from T0547.t06.many.frag # found chain 1qysA in template set T0547 598 :LFLNDNGYL 1qysA 69 :KVFAELGYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=108715 # 1zx1A.598.209 read from T0547.t06.many.frag # found chain 1zx1A in template set T0547 598 :LFLNDNGYL 1zx1A 209 :QRLQTIWKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108716 # 1ltzA.598.179 read from T0547.t06.many.frag # found chain 1ltzA in training set Warning: unaligning (T0547)N603 (1ltzA)F185 because G (3-10) conformation "forbidden" or filtered. T0547 598 :LFLND 1ltzA 180 :WYTVE T0547 604 :GYL 1ltzA 186 :GLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=108718 # 2f1fA.598.136 read from T0547.t06.many.frag # found chain 2f1fA in training set Warning: unaligning (T0547)G604 (2f1fA)A142 because Y (epsilon') conformation "forbidden" or filtered. T0547 598 :LFLNDN 2f1fA 136 :ASIRDV T0547 605 :YL 2f1fA 143 :KI Number of specific fragments extracted= 2 number of extra gaps= 1 total=108720 # 1l9vA.598.210 read from T0547.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0547)G604 (1l9vA)A217 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)L606 (1l9vA)I219 because Y (epsilon') conformation "forbidden" or filtered. T0547 598 :LFLNDN 1l9vA 211 :WQYNKF T0547 605 :Y 1l9vA 218 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=108722 # 2vsgA.598.317 read from T0547.t06.many.frag # found chain 2vsgA in template set Warning: unaligning (T0547)G604 (2vsgA)K324 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLNDN 2vsgA 318 :NKVKEE T0547 605 :YL 2vsgA 325 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=108724 # 1h16A.598.747 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)G604 (1h16A)T754 because P (beta_P) conformation "forbidden" or filtered. T0547 598 :LFLNDN 1h16A 748 :QDVITR T0547 605 :YL 1h16A 755 :FT Number of specific fragments extracted= 2 number of extra gaps= 1 total=108726 # 2be1A.598.86 read from T0547.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)G604 (2be1A)P203 because C (cis) conformation "forbidden" or filtered. T0547 598 :LFLNDN 2be1A 197 :QLVSTS T0547 605 :YL 2be1A 204 :LH Number of specific fragments extracted= 2 number of extra gaps= 1 total=108728 # 1y9lA.599.82 read from T0547.t06.many.frag # found chain 1y9lA in training set T0547 599 :FLNDNGYLK 1y9lA 110 :MLKDGVVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108729 # 1uw4A.599.63 read from T0547.t06.many.frag # found chain 1uw4A in template set Warning: unaligning (T0547)D602 (1uw4A)G116 because T (delta_L) conformation "forbidden" or filtered. T0547 599 :FLN 1uw4A 113 :RFD T0547 603 :NGYLK 1uw4A 117 :YVFLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=108731 # 1olzA.599.314 read from T0547.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)G604 (1olzA)K320 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLNDN 1olzA 315 :VFSHG T0547 605 :YLK 1olzA 321 :YMQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=108733 # 1qcsA.599.127 read from T0547.t06.many.frag # found chain 1qcsA in template set Warning: unaligning (T0547)D602 (1qcsA)N127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1qcsA)V132 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLN 1qcsA 124 :QFN T0547 603 :NGYL 1qcsA 128 :QAFS Number of specific fragments extracted= 2 number of extra gaps= 2 total=108735 # 1a73A.599.17 read from T0547.t06.many.frag # found chain 1a73A in training set Warning: unaligning (T0547)N603 (1a73A)F22 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLND 1a73A 18 :TVGQ T0547 604 :GYLK 1a73A 23 :PVIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=108737 # 1ltzA.599.180 read from T0547.t06.many.frag # found chain 1ltzA in training set Warning: unaligning (T0547)F599 (1ltzA)Y181 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1ltzA)N189 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LNDNGYL 1ltzA 182 :TVEFGLI Number of specific fragments extracted= 1 number of extra gaps= 2 total=108738 # 1k8qA.599.337 read from T0547.t06.many.frag # found chain 1k8qA in template set T0547 599 :FLNDNGYLK 1k8qA 338 :KLPNLIYHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108739 # 1bxyA.599.48 read from T0547.t06.many.frag # found chain 1bxyA in template set Warning: unaligning (T0547)N601 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bxyA)H52 Warning: unaligning (T0547)D602 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bxyA)H52 T0547 599 :FL 1bxyA 49 :KV T0547 603 :NGYLK 1bxyA 53 :LVRVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108741 # 2f5tX.599.124 read from T0547.t06.many.frag # found chain 2f5tX in training set T0547 599 :FLNDNGYLK 2f5tX 234 :IFKESTLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108742 # 1t95A.599.225 read from T0547.t06.many.frag # found chain 1t95A in template set T0547 599 :FLNDNGYLK 1t95A 226 :VAKGEALTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108743 # 1h16A.599.748 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)G604 (1h16A)T754 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLNDN 1h16A 749 :DVITR T0547 605 :YLK 1h16A 755 :FTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=108745 # 2be1A.599.87 read from T0547.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)G604 (2be1A)P203 because C (cis) conformation "forbidden" or filtered. T0547 599 :FLNDN 2be1A 198 :LVSTS T0547 605 :YLK 2be1A 204 :LHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=108747 # 1l3kA.599.123 read from T0547.t06.many.frag # found chain 1l3kA in training set Warning: unaligning (T0547)G604 (1l3kA)G129 because Y (epsilon') conformation "forbidden" or filtered. T0547 599 :FLNDN 1l3kA 124 :YFEQY T0547 605 :YLK 1l3kA 130 :KIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108749 # 1ds1A.599.253 read from T0547.t06.many.frag # found chain 1ds1A in training set T0547 599 :FLNDNGYLK 1ds1A 254 :ALDEVTEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108750 # 1n62A.599.154 read from T0547.t06.many.frag # found chain 1n62A in training set Warning: unaligning (T0547)G604 (1n62A)P160 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 because last residue in template chain is (1n62A)E163 T0547 599 :FLNDN 1n62A 155 :KINGV T0547 605 :YL 1n62A 161 :FE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108752 # 2d0oA.599.570 read from T0547.t06.many.frag # found chain 2d0oA in template set T0547 599 :FLNDNGYLK 2d0oA 571 :ALAHYRLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108753 # 1ftrA.599.265 read from T0547.t06.many.frag # found chain 1ftrA in training set T0547 599 :FLNDNGYLK 1ftrA 266 :AACQQPGVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108754 # 2dpmA.599.228 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 599 :FLNDNGYLK 2dpmA 229 :LSDTGAYVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=108755 # 1otjA.599.227 read from T0547.t06.many.frag # found chain 1otjA in template set T0547 599 :FLNDNGYLK 1otjA 228 :HITKPEFQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108756 # 2b3nA.599.97 read from T0547.t06.many.frag # found chain 2b3nA in training set T0547 599 :FLNDNGYLK 2b3nA 98 :RLPGTVVLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108757 # 1jyhA.599.115 read from T0547.t06.many.frag # found chain 1jyhA in training set Warning: unaligning (T0547)N603 (1jyhA)D120 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLND 1jyhA 116 :SLLQ T0547 604 :GYLK 1jyhA 121 :SAYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108759 # 1l9vA.599.211 read from T0547.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0547)N603 (1l9vA)F216 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)L606 (1l9vA)I219 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1l9vA)T220 because Y (epsilon') conformation "forbidden" or filtered. T0547 599 :FLND 1l9vA 212 :QYNK T0547 604 :GY 1l9vA 217 :AV Number of specific fragments extracted= 2 number of extra gaps= 2 total=108761 # 1tzyA.599.96 read from T0547.t06.many.frag # found chain 1tzyA in template set Warning: unaligning (T0547)G604 (1tzyA)T101 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1tzyA)Q104 because L (left) conformation "forbidden" or filtered. T0547 599 :FLNDN 1tzyA 96 :LLGKV T0547 605 :YL 1tzyA 102 :IA Number of specific fragments extracted= 2 number of extra gaps= 2 total=108763 # 1ylqA.599.62 read from T0547.t06.many.frag # found chain 1ylqA in template set Warning: unaligning (T0547)K607 (1ylqA)F68 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLNDNGYL 1ylqA 60 :KFFDSPFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=108764 # 2f1fA.599.137 read from T0547.t06.many.frag # found chain 2f1fA in training set Warning: unaligning (T0547)G604 (2f1fA)A142 because Y (epsilon') conformation "forbidden" or filtered. T0547 599 :FLNDN 2f1fA 137 :SIRDV T0547 605 :YLK 2f1fA 143 :KIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=108766 # 2cx6A.599.78 read from T0547.t06.many.frag # found chain 2cx6A in template set Warning: unaligning (T0547)G604 (2cx6A)L84 because E (beta_S) conformation "forbidden" or filtered. T0547 599 :FLNDN 2cx6A 79 :ELEGH T0547 605 :YLK 2cx6A 85 :RFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=108768 # 1e6iA.599.108 read from T0547.t06.many.frag # found chain 1e6iA in template set T0547 599 :FLNDNGYLK 1e6iA 427 :KVKEIPEYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=108769 # 1h16A.599.586 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)N603 (1h16A)L591 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLND 1h16A 587 :KIQK T0547 604 :GYLK 1h16A 592 :HTYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=108771 # 1v33A.599.264 read from T0547.t06.many.frag # found chain 1v33A in training set T0547 599 :FLNDNGYLK 1v33A 245 :EFVRKAILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108772 # 1aquA.599.284 read from T0547.t06.many.frag # found chain 1aquA in training set Warning: unaligning (T0547)N603 (1aquA)C287 because P (beta_P) conformation "forbidden" or filtered. T0547 599 :FLND 1aquA 283 :QMKD T0547 604 :GYLK 1aquA 288 :TVKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=108774 # 1y9lA.600.83 read from T0547.t06.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)G604 (1y9lA)V115 because E (beta_S) conformation "forbidden" or filtered. T0547 600 :LNDN 1y9lA 111 :LKDG T0547 605 :YLKS 1y9lA 116 :VLKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=108776 # 1olzA.600.315 read from T0547.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)K607 (1olzA)Q323 because E (beta_S) conformation "forbidden" or filtered. T0547 600 :LNDNGYL 1olzA 316 :FSHGKYM T0547 608 :S 1olzA 324 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=108778 # 1uw4A.600.64 read from T0547.t06.many.frag # found chain 1uw4A in template set Warning: unaligning (T0547)G604 (1uw4A)V118 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LNDN 1uw4A 114 :FDGY T0547 605 :YLKS 1uw4A 119 :FLDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=108780 # 1ltzA.600.181 read from T0547.t06.many.frag # found chain 1ltzA in training set T0547 600 :LNDNGYLKS 1ltzA 182 :TVEFGLINT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108781 # 1bxyA.600.49 read from T0547.t06.many.frag # found chain 1bxyA in template set Warning: unaligning (T0547)N601 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bxyA)H52 Warning: unaligning (T0547)D602 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bxyA)H52 Warning: unaligning (T0547)K607 (1bxyA)E57 because E (beta_S) conformation "forbidden" or filtered. T0547 600 :L 1bxyA 50 :V T0547 603 :NGYL 1bxyA 53 :LVRV T0547 608 :S 1bxyA 58 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=108784 # 1ftrA.600.266 read from T0547.t06.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)N603 (1ftrA)Q270 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LND 1ftrA 267 :ACQ T0547 604 :GYLKS 1ftrA 271 :PGVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=108786 # 1l3kA.600.124 read from T0547.t06.many.frag # found chain 1l3kA in training set T0547 600 :LNDNGYLKS 1l3kA 125 :FEQYGKIEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108787 # 1qcsA.600.128 read from T0547.t06.many.frag # found chain 1qcsA in template set Warning: unaligning (T0547)D602 (1qcsA)N127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)N603 (1qcsA)Q128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1qcsA)A129 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LN 1qcsA 125 :FN T0547 605 :YLKS 1qcsA 130 :FSVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=108789 # 1xpkC.600.367 read from T0547.t06.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)N603 (1xpkC)I371 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1xpkC)N376 because Y (epsilon') conformation "forbidden" or filtered. T0547 600 :LND 1xpkC 368 :DRH T0547 604 :GYLK 1xpkC 372 :FYLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=108791 # 1h16A.600.749 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)G604 (1h16A)T754 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LNDN 1h16A 750 :VITR T0547 605 :YLKS 1h16A 755 :FTQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=108793 # 2f1fA.600.138 read from T0547.t06.many.frag # found chain 2f1fA in training set Warning: unaligning (T0547)N603 (2f1fA)V141 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (2f1fA)A142 because Y (epsilon') conformation "forbidden" or filtered. T0547 600 :LND 2f1fA 138 :IRD T0547 605 :YLKS 2f1fA 143 :KIVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108795 # 1k8qA.600.338 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)G604 (1k8qA)I343 because G (3-10) conformation "forbidden" or filtered. T0547 600 :LNDN 1k8qA 339 :LPNL T0547 605 :YLKS 1k8qA 344 :YHRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=108797 # 1a73A.600.18 read from T0547.t06.many.frag # found chain 1a73A in training set T0547 600 :LNDNGYLKS 1a73A 19 :VGQFPVITH Number of specific fragments extracted= 1 number of extra gaps= 0 total=108798 # 1rdqE.600.290 read from T0547.t06.many.frag # found chain 1rdqE in training set T0547 600 :LNDNGYLKS 1rdqE 291 :IKNHKWFAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108799 # 1t95A.600.226 read from T0547.t06.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)D602 (1t95A)G229 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1t95A)A231 because P (beta_P) conformation "forbidden" or filtered. T0547 600 :LN 1t95A 227 :AK T0547 603 :N 1t95A 230 :E T0547 605 :YLKS 1t95A 232 :LTKV Number of specific fragments extracted= 3 number of extra gaps= 2 total=108802 # 2f5tX.600.125 read from T0547.t06.many.frag # found chain 2f5tX in training set T0547 600 :LNDNGYLKS 2f5tX 235 :FKESTLEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108803 # 1lc5A.600.283 read from T0547.t06.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)G604 (1lc5A)P288 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1lc5A)L289 because T (delta_L) conformation "forbidden" or filtered. T0547 600 :LNDN 1lc5A 284 :LCQL T0547 606 :LKS 1lc5A 290 :LTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=108805 # 2be1A.600.88 read from T0547.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)N601 (2be1A)S200 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)N603 (2be1A)S202 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (2be1A)P203 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (2be1A)L206 because E (beta_S) conformation "forbidden" or filtered. T0547 600 :L 2be1A 199 :V T0547 602 :D 2be1A 201 :T T0547 605 :YL 2be1A 204 :LH T0547 608 :S 2be1A 207 :K Number of specific fragments extracted= 4 number of extra gaps= 3 total=108809 # 1h16A.600.587 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)G604 (1h16A)H592 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1h16A)R595 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1h16A)D596 because L (left) conformation "forbidden" or filtered. T0547 600 :LNDN 1h16A 588 :IQKL T0547 605 :YL 1h16A 593 :TY Number of specific fragments extracted= 2 number of extra gaps= 2 total=108811 # 1e6iA.600.109 read from T0547.t06.many.frag # found chain 1e6iA in template set T0547 600 :LNDNGYLKS 1e6iA 428 :VKEIPEYSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=108812 # 1u0sA.600.71 read from T0547.t06.many.frag # found chain 1u0sA in template set Warning: unaligning (T0547)Y605 (1u0sA)D251 because L (left) conformation "forbidden" or filtered. T0547 600 :LNDNG 1u0sA 246 :LSSIA T0547 606 :LKS 1u0sA 252 :IER Number of specific fragments extracted= 2 number of extra gaps= 1 total=108814 # 2dpmA.600.229 read from T0547.t06.many.frag # found chain 2dpmA in training set T0547 600 :LNDNGYLKS 2dpmA 230 :SDTGAYVML Number of specific fragments extracted= 1 number of extra gaps= 0 total=108815 # 1otjA.600.228 read from T0547.t06.many.frag # found chain 1otjA in template set Warning: unaligning (T0547)K607 (1otjA)V236 because E (beta_S) conformation "forbidden" or filtered. T0547 600 :LNDNGYL 1otjA 229 :ITKPEFQ T0547 608 :S 1otjA 237 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=108817 # 1qj4A.600.182 read from T0547.t06.many.frag # found chain 1qj4A in training set T0547 600 :LNDNGYLKS 1qj4A 183 :LAKRPFFTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108818 # 2f69A.600.106 read from T0547.t06.many.frag # found chain 2f69A in training set Warning: unaligning (T0547)G604 (2f69A)V216 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (2f69A)A219 because Y (epsilon') conformation "forbidden" or filtered. T0547 600 :LNDN 2f69A 212 :ESER T0547 605 :YL 2f69A 217 :YV T0547 608 :S 2f69A 220 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=108821 1ydlA expands to /projects/compbio/data/pdb/1ydl.pdb.gz 1ydlA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ydlA.600.36 read from T0547.t06.many.frag # adding 1ydlA to template set # found chain 1ydlA in template set Warning: unaligning (T0547)K607 (1ydlA)Q36 because E (beta_S) conformation "forbidden" or filtered. T0547 600 :LNDNGYL 1ydlA 29 :LGKKFII T0547 608 :S 1ydlA 37 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=108823 # 1jyhA.600.116 read from T0547.t06.many.frag # found chain 1jyhA in training set Warning: unaligning (T0547)G604 (1jyhA)S121 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1jyhA)A122 because G (3-10) conformation "forbidden" or filtered. T0547 600 :LNDN 1jyhA 117 :LLQD T0547 606 :LKS 1jyhA 123 :YEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=108825 # 1musA.600.331 read from T0547.t06.many.frag # found chain 1musA in template set T0547 600 :LNDNGYLKS 1musA 332 :WKTGAGAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=108826 # 1rp0A.600.245 read from T0547.t06.many.frag # found chain 1rp0A in training set T0547 600 :LNDNGYLKS 1rp0A 246 :IDGAPRMGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=108827 # 1vqoM.600.109 read from T0547.t06.many.frag # found chain 1vqoM in template set Warning: unaligning (T0547)G604 (1vqoM)R113 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1vqoM)N116 because Y (epsilon') conformation "forbidden" or filtered. T0547 600 :LNDN 1vqoM 109 :FPNL T0547 605 :YL 1vqoM 114 :VL T0547 608 :S 1vqoM 117 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=108830 # 1olzA.601.316 read from T0547.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0547)G604 (1olzA)K320 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :NDN 1olzA 317 :SHG T0547 605 :YLKSI 1olzA 321 :YMQST Number of specific fragments extracted= 2 number of extra gaps= 1 total=108832 # 1y9lA.601.84 read from T0547.t06.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)G604 (1y9lA)V115 because E (beta_S) conformation "forbidden" or filtered. T0547 601 :NDN 1y9lA 112 :KDG T0547 605 :YLKSI 1y9lA 116 :VLKGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=108834 # 1ltzA.601.182 read from T0547.t06.many.frag # found chain 1ltzA in training set Warning: unaligning (T0547)G604 (1ltzA)G186 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :NDN 1ltzA 183 :VEF T0547 605 :YLKSI 1ltzA 187 :LINTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=108836 # 1bxyA.601.50 read from T0547.t06.many.frag # found chain 1bxyA in template set Warning: unaligning (T0547)N601 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bxyA)H52 Warning: unaligning (T0547)D602 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bxyA)H52 Warning: unaligning (T0547)G604 (1bxyA)V54 because E (beta_S) conformation "forbidden" or filtered. T0547 603 :N 1bxyA 53 :L T0547 605 :YLKSI 1bxyA 55 :RVEVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=108838 # 1uw4A.601.65 read from T0547.t06.many.frag # found chain 1uw4A in template set Warning: unaligning (T0547)D602 (1uw4A)G116 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)N603 (1uw4A)Y117 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :N 1uw4A 115 :D T0547 604 :GYLKSI 1uw4A 118 :VFLDNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=108840 # 1lc5A.601.284 read from T0547.t06.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)G604 (1lc5A)P288 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1lc5A)L289 because T (delta_L) conformation "forbidden" or filtered. T0547 601 :NDN 1lc5A 285 :CQL T0547 606 :LKSI 1lc5A 290 :LTVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=108842 # 1xpkC.601.368 read from T0547.t06.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)N603 (1xpkC)I371 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)Y605 (1xpkC)Y373 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1xpkC)N376 because Y (epsilon') conformation "forbidden" or filtered. T0547 601 :ND 1xpkC 369 :RH T0547 604 :G 1xpkC 372 :F T0547 606 :LK 1xpkC 374 :LS T0547 609 :I 1xpkC 377 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=108846 # 1h16A.601.750 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)G604 (1h16A)T754 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1h16A)S758 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I609 because last residue in template chain is (1h16A)M759 T0547 601 :NDN 1h16A 751 :ITR T0547 605 :YLK 1h16A 755 :FTQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=108848 # 1l3kA.601.125 read from T0547.t06.many.frag # found chain 1l3kA in training set T0547 601 :NDNGYLKSI 1l3kA 126 :EQYGKIEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108849 # 1rdqE.601.291 read from T0547.t06.many.frag # found chain 1rdqE in training set T0547 601 :NDNGYLKSI 1rdqE 292 :KNHKWFATT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108850 # 1e6iA.601.110 read from T0547.t06.many.frag # found chain 1e6iA in template set T0547 601 :NDNGYLKSI 1e6iA 429 :KEIPEYSHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108851 # 2f69A.601.107 read from T0547.t06.many.frag # found chain 2f69A in training set Warning: unaligning (T0547)N603 (2f69A)R215 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (2f69A)A219 because Y (epsilon') conformation "forbidden" or filtered. T0547 601 :ND 2f69A 213 :SE T0547 604 :GYL 2f69A 216 :VYV T0547 608 :SI 2f69A 220 :ES Number of specific fragments extracted= 3 number of extra gaps= 2 total=108854 # 1ftrA.601.267 read from T0547.t06.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)N603 (1ftrA)Q270 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :ND 1ftrA 268 :CQ T0547 604 :GYLKSI 1ftrA 271 :PGVVKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=108856 # 1vqoM.601.110 read from T0547.t06.many.frag # found chain 1vqoM in template set Warning: unaligning (T0547)G604 (1vqoM)R113 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1vqoM)N116 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1vqoM)S117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)I609 (1vqoM)Y118 because Y (epsilon') conformation "forbidden" or filtered. T0547 601 :NDN 1vqoM 110 :PNL T0547 605 :YL 1vqoM 114 :VL Number of specific fragments extracted= 2 number of extra gaps= 2 total=108858 # 2f1fA.601.139 read from T0547.t06.many.frag # found chain 2f1fA in training set T0547 601 :NDNGYLKSI 2f1fA 139 :RDVAKIVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108859 # 2f5tX.601.126 read from T0547.t06.many.frag # found chain 2f5tX in training set T0547 601 :NDNGYLKSI 2f5tX 236 :KESTLEKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=108860 # 1h16A.601.588 read from T0547.t06.many.frag # found chain 1h16A in training set Warning: unaligning (T0547)G604 (1h16A)H592 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :NDN 1h16A 589 :QKL T0547 605 :YLKSI 1h16A 593 :TYRDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=108862 # 1k8qA.601.339 read from T0547.t06.many.frag # found chain 1k8qA in template set Warning: unaligning (T0547)G604 (1k8qA)I343 because G (3-10) conformation "forbidden" or filtered. T0547 601 :NDN 1k8qA 340 :PNL T0547 605 :YLKSI 1k8qA 344 :YHRKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=108864 # 1ydlA.601.37 read from T0547.t06.many.frag # found chain 1ydlA in template set Warning: unaligning (T0547)N601 (1ydlA)G30 because T (delta_L) conformation "forbidden" or filtered. T0547 602 :DNGYLKSI 1ydlA 31 :KKFIIQDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=108865 # 1u0sA.601.72 read from T0547.t06.many.frag # found chain 1u0sA in template set Warning: unaligning (T0547)N603 (1u0sA)I249 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :ND 1u0sA 247 :SS T0547 604 :GYLKSI 1u0sA 250 :ADIERV Number of specific fragments extracted= 2 number of extra gaps= 1 total=108867 # 1regX.601.78 read from T0547.t06.many.frag # found chain 1regX in template set Warning: unaligning (T0547)L606 (1regX)I84 because Y (epsilon') conformation "forbidden" or filtered. T0547 601 :NDNGY 1regX 79 :EDWGL T0547 607 :KSI 1regX 85 :EIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=108869 # 1fjgI.601.96 read from T0547.t06.many.frag # found chain 1fjgI in template set T0547 601 :NDNGYLKSI 1fjgI 97 :KPLGFLTRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108870 # 1svb.601.268 read from T0547.t06.many.frag # found chain 1svb in template set Warning: unaligning (T0547)D602 (1svb)G270 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)L606 (1svb)A274 because Y (epsilon') conformation "forbidden" or filtered. T0547 601 :N 1svb 269 :A T0547 603 :NGY 1svb 271 :VPV T0547 607 :KSI 1svb 275 :HIE Number of specific fragments extracted= 3 number of extra gaps= 2 total=108873 1l0lK expands to /projects/compbio/data/pdb/1l0l.pdb.gz 1l0lK:# 1l0lK.601.42 read from T0547.t06.many.frag # adding 1l0lK to template set # found chain 1l0lK in template set Warning: unaligning (T0547)L606 (1l0lK)I48 because T (delta_L) conformation "forbidden" or filtered. T0547 601 :NDNGY 1l0lK 43 :DWVPY T0547 607 :KSI 1l0lK 49 :NGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=108875 # 1qj4A.601.183 read from T0547.t06.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)G604 (1qj4A)P187 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1qj4A)T190 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :NDN 1qj4A 184 :AKR T0547 605 :YL 1qj4A 188 :FF T0547 608 :SI 1qj4A 191 :KE Number of specific fragments extracted= 3 number of extra gaps= 2 total=108878 # 1qcsA.601.129 read from T0547.t06.many.frag # found chain 1qcsA in template set Warning: unaligning (T0547)N601 (1qcsA)N126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)D602 (1qcsA)N127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1qcsA)G133 because T (delta_L) conformation "forbidden" or filtered. T0547 603 :NGYLK 1qcsA 128 :QAFSV T0547 609 :I 1qcsA 134 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=108880 # 2dpmA.601.230 read from T0547.t06.many.frag # found chain 2dpmA in training set Warning: unaligning (T0547)G604 (2dpmA)A234 because E (beta_S) conformation "forbidden" or filtered. T0547 601 :NDN 2dpmA 231 :DTG T0547 605 :YLKSI 2dpmA 235 :YVMLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=108882 1repC expands to /projects/compbio/data/pdb/1rep.pdb.gz 1repC:# 1repC.601.216 read from T0547.t06.many.frag # adding 1repC to template set # found chain 1repC in template set Warning: unaligning (T0547)G604 (1repC)T220 because E (beta_S) conformation "forbidden" or filtered. T0547 601 :NDN 1repC 217 :NSR T0547 605 :YLKSI 1repC 221 :PMRLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=108884 # 2be1A.601.89 read from T0547.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0547)G604 (2be1A)P203 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (2be1A)L206 because E (beta_S) conformation "forbidden" or filtered. T0547 601 :NDN 2be1A 200 :STS T0547 605 :YL 2be1A 204 :LH T0547 608 :SI 2be1A 207 :KT Number of specific fragments extracted= 3 number of extra gaps= 2 total=108887 # 1od3A.601.112 read from T0547.t06.many.frag # found chain 1od3A in training set Warning: unaligning (T0547)G604 (1od3A)T99 because P (beta_P) conformation "forbidden" or filtered. T0547 601 :NDN 1od3A 96 :PSG T0547 605 :YLKSI 1od3A 100 :LLGTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=108889 # 1y9lA.602.85 read from T0547.t06.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)N603 (1y9lA)G114 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1y9lA)V115 because E (beta_S) conformation "forbidden" or filtered. T0547 602 :D 1y9lA 113 :D T0547 605 :YLKSIG 1y9lA 116 :VLKGNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=108891 # 1olzA.602.317 read from T0547.t06.many.frag # found chain 1olzA in template set T0547 602 :DNGYLKSIG 1olzA 318 :HGKYMQSTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=108892 # 1ltzA.602.183 read from T0547.t06.many.frag # found chain 1ltzA in training set Warning: unaligning (T0547)K607 (1ltzA)N189 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :DNGYL 1ltzA 184 :EFGLI T0547 608 :SIG 1ltzA 190 :TPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=108894 # 1uw4A.602.66 read from T0547.t06.many.frag # found chain 1uw4A in template set Warning: unaligning (T0547)D602 (1uw4A)G116 because T (delta_L) conformation "forbidden" or filtered. T0547 603 :NGYLKSIG 1uw4A 117 :YVFLDNKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=108895 # 1xpkC.602.369 read from T0547.t06.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)N603 (1xpkC)I371 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1xpkC)N376 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1xpkC)E378 because E (beta_S) conformation "forbidden" or filtered. T0547 602 :D 1xpkC 370 :H T0547 604 :GYLK 1xpkC 372 :FYLS T0547 609 :I 1xpkC 377 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=108898 # 1bxyA.602.51 read from T0547.t06.many.frag # found chain 1bxyA in template set Warning: unaligning (T0547)D602 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bxyA)H52 Warning: unaligning (T0547)G610 because last residue in template chain is (1bxyA)E60 T0547 603 :NGYLKSI 1bxyA 53 :LVRVEVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=108899 # 1lc5A.602.285 read from T0547.t06.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)Y605 (1lc5A)L289 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1lc5A)P294 because N (gamma') conformation "forbidden" or filtered. T0547 602 :DNG 1lc5A 286 :QLP T0547 606 :LKSI 1lc5A 290 :LTVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=108901 # 2f69A.602.108 read from T0547.t06.many.frag # found chain 2f69A in training set T0547 602 :DNGYLKSIG 2f69A 214 :ERVYVAESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108902 # 1rdqE.602.292 read from T0547.t06.many.frag # found chain 1rdqE in training set T0547 602 :DNGYLKSIG 1rdqE 293 :NHKWFATTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108903 # 1l3kA.602.126 read from T0547.t06.many.frag # found chain 1l3kA in training set T0547 602 :DNGYLKSIG 1l3kA 127 :QYGKIEVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=108904 # 1fjgI.602.97 read from T0547.t06.many.frag # found chain 1fjgI in template set Warning: unaligning (T0547)G610 (1fjgI)A106 because G (3-10) conformation "forbidden" or filtered. T0547 602 :DNGYLKSI 1fjgI 98 :PLGFLTRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=108905 # 1ydlA.602.38 read from T0547.t06.many.frag # found chain 1ydlA in template set Warning: unaligning (T0547)D602 (1ydlA)K31 because Y (epsilon') conformation "forbidden" or filtered. T0547 603 :NGYLKSIG 1ydlA 32 :KFIIQDID Number of specific fragments extracted= 1 number of extra gaps= 1 total=108906 # 1vqoM.602.111 read from T0547.t06.many.frag # found chain 1vqoM in template set Warning: unaligning (T0547)K607 (1vqoM)N116 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1vqoM)S119 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :DNGYL 1vqoM 111 :NLRVL T0547 608 :SI 1vqoM 117 :SY Number of specific fragments extracted= 2 number of extra gaps= 2 total=108908 # 2f1fA.602.140 read from T0547.t06.many.frag # found chain 2f1fA in training set Warning: unaligning (T0547)G610 (2f1fA)A148 because E (beta_S) conformation "forbidden" or filtered. T0547 602 :DNGYLKSI 2f1fA 140 :DVAKIVEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=108909 # 1e6iA.602.111 read from T0547.t06.many.frag # found chain 1e6iA in template set Warning: unaligning (T0547)I609 (1e6iA)L437 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e6iA)D439 T0547 602 :DNGYLKS 1e6iA 430 :EIPEYSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=108910 # 1qcsA.602.130 read from T0547.t06.many.frag # found chain 1qcsA in template set Warning: unaligning (T0547)D602 (1qcsA)N127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1qcsA)A129 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1qcsA)Q135 because E (beta_S) conformation "forbidden" or filtered. T0547 603 :N 1qcsA 128 :Q T0547 605 :YLKSI 1qcsA 130 :FSVGQ Number of specific fragments extracted= 2 number of extra gaps= 3 total=108912 # 1l0lK.602.43 read from T0547.t06.many.frag # found chain 1l0lK in template set Warning: unaligning (T0547)L606 (1l0lK)I48 because T (delta_L) conformation "forbidden" or filtered. T0547 602 :DNGY 1l0lK 44 :WVPY T0547 607 :KSIG 1l0lK 49 :NGKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=108914 # 1jalA.602.173 read from T0547.t06.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)G610 (1jalA)G182 because N (gamma') conformation "forbidden" or filtered. T0547 602 :DNGYLKSI 1jalA 174 :NAGMIRSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=108915 # 1od3A.602.113 read from T0547.t06.many.frag # found chain 1od3A in training set Warning: unaligning (T0547)N603 (1od3A)G98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1od3A)G102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1od3A)Y105 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :D 1od3A 97 :S T0547 604 :GYL 1od3A 99 :TLL T0547 608 :SI 1od3A 103 :TI Number of specific fragments extracted= 3 number of extra gaps= 3 total=108918 # 1yk3A.602.183 read from T0547.t06.many.frag # found chain 1yk3A in template set Warning: unaligning (T0547)K607 (1yk3A)G189 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1yk3A)D192 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :DNGYL 1yk3A 184 :GCKFL T0547 608 :SI 1yk3A 190 :EH Number of specific fragments extracted= 2 number of extra gaps= 2 total=108920 # 2eulA.602.70 read from T0547.t06.many.frag # found chain 2eulA in template set Warning: unaligning (T0547)G610 (2eulA)S79 because Y (epsilon') conformation "forbidden" or filtered. T0547 602 :DNGYLKSI 2eulA 71 :RAVILEEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=108921 # 1u0sA.602.73 read from T0547.t06.many.frag # found chain 1u0sA in template set Warning: unaligning (T0547)Y605 (1u0sA)D251 because L (left) conformation "forbidden" or filtered. T0547 602 :DNG 1u0sA 248 :SIA T0547 606 :LKSIG 1u0sA 252 :IERVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=108923 # 1t95A.602.228 read from T0547.t06.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)G610 (1t95A)R237 because Y (epsilon') conformation "forbidden" or filtered. T0547 602 :DNGYLKSI 1t95A 229 :GEALTKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=108924 # 1nkpA.602.30 read from T0547.t06.many.frag # found chain 1nkpA in training set Warning: unaligning (T0547)N603 (1nkpA)I928 because E (beta_S) conformation "forbidden" or filtered. T0547 602 :D 1nkpA 927 :Q T0547 604 :GYLKSIG 1nkpA 929 :PELENNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=108926 # 1qj4A.602.184 read from T0547.t06.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)G604 (1qj4A)P187 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1qj4A)T190 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :DN 1qj4A 185 :KR T0547 605 :YL 1qj4A 188 :FF T0547 608 :SIG 1qj4A 191 :KEG Number of specific fragments extracted= 3 number of extra gaps= 2 total=108929 # 1ftrA.602.268 read from T0547.t06.many.frag # found chain 1ftrA in training set Warning: unaligning (T0547)G604 (1ftrA)P271 because P (beta_P) conformation "forbidden" or filtered. T0547 602 :DN 1ftrA 269 :QQ T0547 605 :YLKSIG 1ftrA 272 :GVVKIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=108931 # 1musA.602.333 read from T0547.t06.many.frag # found chain 1musA in template set Warning: unaligning (T0547)Y605 (1musA)G337 because T (delta_L) conformation "forbidden" or filtered. T0547 602 :DNG 1musA 334 :TGA T0547 606 :LKSIG 1musA 338 :AERQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=108933 # 1repC.602.217 read from T0547.t06.many.frag # found chain 1repC in template set Warning: unaligning (T0547)I609 (1repC)S225 because Y (epsilon') conformation "forbidden" or filtered. T0547 602 :DNGYLKS 1repC 218 :SRTPMRL T0547 610 :G 1repC 226 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=108935 # 1rx0A.602.352 read from T0547.t06.many.frag # found chain 1rx0A in training set T0547 602 :DNGYLKSIG 1rx0A 353 :GYGYLKDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=108936 # 2b3nA.602.100 read from T0547.t06.many.frag # found chain 2b3nA in training set Warning: unaligning (T0547)D602 (2b3nA)G101 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (2b3nA)S109 because E (beta_S) conformation "forbidden" or filtered. T0547 603 :NGYLKSI 2b3nA 102 :TVVLLEQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=108937 # 1y9lA.603.86 read from T0547.t06.many.frag # found chain 1y9lA in training set Warning: unaligning (T0547)G604 (1y9lA)V115 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1y9lA)K121 because G (3-10) conformation "forbidden" or filtered. T0547 603 :N 1y9lA 114 :G T0547 605 :YLKSI 1y9lA 116 :VLKGN T0547 611 :V 1y9lA 122 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=108940 # 1ltzA.603.184 read from T0547.t06.many.frag # found chain 1ltzA in training set Warning: unaligning (T0547)K607 (1ltzA)N189 because P (beta_P) conformation "forbidden" or filtered. T0547 603 :NGYL 1ltzA 185 :FGLI T0547 608 :SIGV 1ltzA 190 :TPAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=108942 # 1olzA.603.318 read from T0547.t06.many.frag # found chain 1olzA in template set T0547 603 :NGYLKSIGV 1olzA 319 :GKYMQSTTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108943 # 1lc5A.603.286 read from T0547.t06.many.frag # found chain 1lc5A in training set Warning: unaligning (T0547)N603 (1lc5A)L287 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (1lc5A)P288 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1lc5A)P294 because N (gamma') conformation "forbidden" or filtered. T0547 605 :YLKSI 1lc5A 289 :LLTVY T0547 611 :V 1lc5A 295 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=108945 # 1uw4A.603.67 read from T0547.t06.many.frag # found chain 1uw4A in template set Warning: unaligning (T0547)N603 (1uw4A)Y117 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)I609 (1uw4A)K123 because G (3-10) conformation "forbidden" or filtered. T0547 604 :GYLKS 1uw4A 118 :VFLDN T0547 610 :GV 1uw4A 124 :GQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=108947 # 1xpkC.603.370 read from T0547.t06.many.frag # found chain 1xpkC in template set Warning: unaligning (T0547)G604 (1xpkC)F372 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1xpkC)N376 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)V611 (1xpkC)N379 because L (left) conformation "forbidden" or filtered. T0547 603 :N 1xpkC 371 :I T0547 605 :YLK 1xpkC 373 :YLS T0547 609 :IG 1xpkC 377 :IE Number of specific fragments extracted= 3 number of extra gaps= 3 total=108950 # 2f69A.603.109 read from T0547.t06.many.frag # found chain 2f69A in training set Warning: unaligning (T0547)K607 (2f69A)A219 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (2f69A)E220 because P (beta_P) conformation "forbidden" or filtered. T0547 603 :NGYL 2f69A 215 :RVYV T0547 609 :IGV 2f69A 221 :SLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=108952 # 1rdqE.603.293 read from T0547.t06.many.frag # found chain 1rdqE in training set Warning: unaligning (T0547)G610 (1rdqE)D301 because N (gamma') conformation "forbidden" or filtered. T0547 603 :NGYLKSI 1rdqE 294 :HKWFATT T0547 611 :V 1rdqE 302 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=108954 # 1fjgI.603.98 read from T0547.t06.many.frag # found chain 1fjgI in template set T0547 603 :NGYLKSIGV 1fjgI 99 :LGFLTRDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=108955 # 1vqoM.603.112 read from T0547.t06.many.frag # found chain 1vqoM in template set Warning: unaligning (T0547)G604 (1vqoM)R113 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1vqoM)N116 because Y (epsilon') conformation "forbidden" or filtered. T0547 603 :N 1vqoM 112 :L T0547 605 :YL 1vqoM 114 :VL T0547 608 :SIGV 1vqoM 117 :SYSV Number of specific fragments extracted= 3 number of extra gaps= 2 total=108958 # 1l3kA.603.127 read from T0547.t06.many.frag # found chain 1l3kA in training set Warning: unaligning (T0547)G610 (1l3kA)E135 because D (zeta) conformation "forbidden" or filtered. T0547 603 :NGYLKSI 1l3kA 128 :YGKIEVI T0547 611 :V 1l3kA 136 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=108960 # 2f1fA.603.141 read from T0547.t06.many.frag # found chain 2f1fA in training set Warning: unaligning (T0547)N603 (2f1fA)V141 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0547)G604 (2f1fA)A142 because Y (epsilon') conformation "forbidden" or filtered. T0547 605 :YLKSIGV 2f1fA 143 :KIVEVAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=108961 # 1ydlA.603.39 read from T0547.t06.many.frag # found chain 1ydlA in template set T0547 603 :NGYLKSIGV 1ydlA 32 :KFIIQDIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108962 # 1e6iA.603.112 read from T0547.t06.many.frag # found chain 1e6iA in template set Warning: unaligning (T0547)G610 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e6iA)D439 Warning: unaligning (T0547)V611 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e6iA)D439 T0547 603 :NGYLKSI 1e6iA 431 :IPEYSHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=108963 # 1jalA.603.174 read from T0547.t06.many.frag # found chain 1jalA in template set Warning: unaligning (T0547)G604 (1jalA)G176 because P (beta_P) conformation "forbidden" or filtered. T0547 603 :N 1jalA 175 :A T0547 605 :YLKSIGV 1jalA 177 :MIRSVGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=108965 # 1od3A.603.114 read from T0547.t06.many.frag # found chain 1od3A in training set T0547 603 :NGYLKSIGV 1od3A 98 :GTLLGTIYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108966 # 2eulA.603.71 read from T0547.t06.many.frag # found chain 2eulA in template set Warning: unaligning (T0547)G610 (2eulA)S79 because Y (epsilon') conformation "forbidden" or filtered. T0547 603 :NGYLKSI 2eulA 72 :AVILEEG T0547 611 :V 2eulA 80 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=108968 # 1rx0A.603.353 read from T0547.t06.many.frag # found chain 1rx0A in training set T0547 603 :NGYLKSIGV 1rx0A 354 :YGYLKDYAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=108969 # 1l0lK.603.44 read from T0547.t06.many.frag # found chain 1l0lK in template set Warning: unaligning (T0547)N603 (1l0lK)V45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)S608 (1l0lK)G50 because G (3-10) conformation "forbidden" or filtered. T0547 604 :GYLK 1l0lK 46 :PYIN T0547 609 :IGV 1l0lK 51 :KFK Number of specific fragments extracted= 2 number of extra gaps= 2 total=108971 # 1yk3A.603.184 read from T0547.t06.many.frag # found chain 1yk3A in template set Warning: unaligning (T0547)G604 (1yk3A)K186 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1yk3A)G189 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1yk3A)D192 because P (beta_P) conformation "forbidden" or filtered. T0547 603 :N 1yk3A 185 :C T0547 605 :YL 1yk3A 187 :FL T0547 608 :SI 1yk3A 190 :EH T0547 611 :V 1yk3A 193 :T Number of specific fragments extracted= 4 number of extra gaps= 3 total=108975 # 1i4uA.603.160 read from T0547.t06.many.frag # found chain 1i4uA in training set T0547 603 :NGYLKSIGV 1i4uA 161 :TTRFVKTVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=108976 # 1t95A.603.229 read from T0547.t06.many.frag # found chain 1t95A in template set Warning: unaligning (T0547)G604 (1t95A)A231 because P (beta_P) conformation "forbidden" or filtered. T0547 603 :N 1t95A 230 :E T0547 605 :YLKSIGV 1t95A 232 :LTKVLRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=108978 # 1musA.603.334 read from T0547.t06.many.frag # found chain 1musA in template set Warning: unaligning (T0547)Y605 (1musA)G337 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0547)K607 (1musA)E339 because G (3-10) conformation "forbidden" or filtered. T0547 603 :NG 1musA 335 :GA T0547 606 :L 1musA 338 :A T0547 608 :SIGV 1musA 340 :RQRM Number of specific fragments extracted= 3 number of extra gaps= 2 total=108981 # 1nkpA.603.31 read from T0547.t06.many.frag # found chain 1nkpA in training set T0547 603 :NGYLKSIGV 1nkpA 928 :IPELENNEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=108982 # 1u0sA.603.74 read from T0547.t06.many.frag # found chain 1u0sA in template set Warning: unaligning (T0547)Y605 (1u0sA)D251 because L (left) conformation "forbidden" or filtered. T0547 603 :NG 1u0sA 249 :IA T0547 606 :LKSIGV 1u0sA 252 :IERVII Number of specific fragments extracted= 2 number of extra gaps= 1 total=108984 # 2f5uA.603.375 read from T0547.t06.many.frag # found chain 2f5uA in template set Warning: unaligning (T0547)G604 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR in next template residue (2f5uA)P514 Warning: unaligning (T0547)S608 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE+HIGH_B_FACTOR at template residue (2f5uA)P514 T0547 603 :N 2f5uA 509 :R T0547 609 :IGV 2f5uA 515 :TPV Number of specific fragments extracted= 2 number of extra gaps= 0 total=108986 # 1qcsA.603.131 read from T0547.t06.many.frag # found chain 1qcsA in template set T0547 603 :NGYLKSIGV 1qcsA 128 :QAFSVGQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=108987 # 1qj4A.603.185 read from T0547.t06.many.frag # found chain 1qj4A in training set Warning: unaligning (T0547)K607 (1qj4A)T190 because P (beta_P) conformation "forbidden" or filtered. T0547 603 :NGYL 1qj4A 186 :RPFF T0547 608 :SIGV 1qj4A 191 :KEGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=108989 # 1c4oA.603.465 read from T0547.t06.many.frag # found chain 1c4oA in template set T0547 603 :NGYLKSIGV 1c4oA 467 :ARYLHHELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=108990 # 1c8nA.603.128 read from T0547.t06.many.frag # found chain 1c8nA in template set Warning: unaligning (T0547)L606 (1c8nA)W132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0547)G610 (1c8nA)S136 because E (beta_S) conformation "forbidden" or filtered. T0547 603 :NGY 1c8nA 129 :YSK T0547 607 :KSI 1c8nA 133 :RWV T0547 611 :V 1c8nA 137 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=108993 # command:# Prefix for output files set to # command:# Prefix for output files set to decoys/ # command:CPU_time= 4816.781 sec, elapsed time= 7673.185 sec. # command:# Setting Backrub to 0.500 # Setting BigBackrub to 0.300 # Setting FixOmega to 0.300 # Setting HealPeptide to 0.300 # Setting JiggleSubtree to 0.300 # Setting JiggleSegment to 0.300 # Setting OptSubtree to 1.000 # Setting OptSegment to 1.000 # Setting OptAllSegments to 0.300 # Setting ShiftSubtree to 0.300 # Setting ShiftSegment to 0.300 # Setting TweakPhiSubtree to 0.300 # Setting TweakPhiSegment to 0.300 # Setting TweakPsiSubtree to 0.300 # Setting TweakPsiSegment to 0.300 # Setting TweakPsiPhiSubtree to 0.300 # Setting TweakPsiPhiSegment to 0.300 # Setting TweakHbondSubtree to 0.300 # Setting TweakHbondSegment to 0.300 # Setting TweakMultimer to 0.300 # Setting TweakPeptide to 0.300 # Setting OneRotamer to 1.000 # Setting ClashingRotamer to 1.000 # Setting ClusteredRotamer to 2.000 # Setting ReduceBreak to 5.000 # Setting CloseGap to 5.000 # Setting HealGap to 5.000 # Setting MoveGap to 5.000 # Setting ReduceConstraint to 5.000 # Setting ImproveSSBond to 0.000 # Setting InsertSSBond to 0.000 # Setting InsertAlignment to 1.000 # Setting InsertSpecificFragment to 20.000 # Setting InsertFragment to 5.000 # Setting TwoFragment to 5.000 # Setting CrossOver to 3.000 # Setting CrossAndInsert to 5.000 # Setting ReduceClash to 5.000 # Initial Method pseudocounts set to # HealPeptide 0.300 # JiggleSubtree 0.300 # JiggleSegment 0.300 # OptSubtree 1.000 # OptSegment 1.000 # OptAllSegments 0.300 # ShiftSubtree 0.300 # ShiftSegment 0.300 # TweakPhiSubtree 0.300 # TweakPhiSegment 0.300 # TweakPsiSubtree 0.300 # TweakPsiSegment 0.300 # TweakPsiPhiSubtree 0.300 # TweakPsiPhiSegment 0.300 # TweakHbondSubtree 0.300 # TweakHbondSegment 0.300 # TweakMultimer 0.300 # TweakPeptide 0.300 # FixOmega 0.300 # Backrub 0.500 # BigBackrub 0.300 # OneRotamer 1.000 # ClashingRotamer 1.000 # ClusteredRotamer 2.000 # PatchSidechain 0.000 # ReduceBreak 5.000 # CloseGap 5.000 # HealGap 5.000 # MoveGap 5.000 # ReduceConstraint 5.000 # ImproveSSBond 0.000 # InsertSSBond 0.000 # InsertAlignment 1.000 # InsertSpecificFragment 20.000 # InsertFragment 5.000 # TwoFragment 5.000 # CrossOver 3.000 # DoubleCross 0.100 # CrossAndInsert 5.000 # ReduceClash 5.000 # command:# OptConform to optimize cost = # ( 50.000 * align_constraints + 5.000 * ehl2_constraints + 5.000 * align_sheets + 10.000 * pred_nb11_back(9.650) + 10.000 * pred_alpha_back + 5.000 * pred_n_notor_back + 5.000 * pred_bys_back + 3.000 * pred_pb_back + 15.000 * wet6.5(6.500, /log(length)) + 15.000 * dry5(5.000) + 15.000 * dry6.5(6.500) + 20.000 * dry8(8.000) + 15.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 2.000 * n_ca_c + 5.000 * bad_peptide + 1.000 * soft_clashes + 10.000 * backbone_clashes + 25.000 * break + 10.000 * hbond_geom + 10.000 * hbond_geom_backbone + 20.000 * hbond_geom_beta + 40.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 5.000 * maybe_ssbond_geom ) # Will do 1 iterations of optimization # iteration 0 # filling pool to have 20 conformations # best score in initial pool out of 20: T0547.try1 at pool[10] 253.183 cost/residue, 2355 clashes 0.131 breaks # optimizing backbone with 20 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # TweakPsiPhi removed gap before (T0547)I212 # TweakPhi removed gap before (T0547)G274 # TweakPhi removed gap before (T0547)L258 # TweakPsiPhi removed gap before (T0547)Y565 # TweakPhi removed gap before (T0547)L211 # generation 1: best score out of 20: T0547.try1 246.471 cost/residue, 2306 clashes 0.178 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 0 = 0.00000 0.00000 ## OptSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 2 2 / 2 = 1.00000 2.99872 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 1 / 2 = 0.50000 0.00119 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 1 / 1 = 1.00000 0.02649 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 0 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 1 2 / 5 = 0.40000 0.02783 ## ClashingRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 4 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 3 / 5 = 0.60000 5.49299 ## CloseGap 0 2 3 / 6 = 0.50000 0.50960 ## HealGap 0 0 0 / 4 = 0.00000 0.00000 ## MoveGap 0 3 6 / 14 = 0.42857 7.64053 ## ReduceConstraint 0 0 0 / 4 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 1 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 2 / 21 = 0.09524 0.10987 ## InsertFragment 0 1 1 / 5 = 0.20000 1.34252 ## TwoFragment 0 0 0 / 2 = 0.00000 0.00000 ## CrossOver 0 0 0 / 2 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 7 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 8 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)N443 # TweakPhi removed gap before (T0547)I59 # generation 2: best score out of 20: T0547.try1 242.51527 cost/residue, 2203 clashes 0.17741 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 1 / 1 = 1.00000 0.03120 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 0 = 0.00000 0.00000 ## OptSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 3 2 / 3 = 0.66667 1.99915 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 3 = 0.33333 0.00079 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 1 / 1 = 1.00000 0.01477 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 1 / 1 = 1.00000 0.02649 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 1 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 0 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 1 2 / 8 = 0.25000 0.01740 ## ClashingRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 4 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 3 5 / 12 = 0.41667 2.91368 ## CloseGap 0 2 3 / 10 = 0.30000 0.30576 ## HealGap 0 4 0 / 11 = 0.00000 0.00000 ## MoveGap 0 4 6 / 19 = 0.31579 5.62986 ## ReduceConstraint 0 0 0 / 11 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 3 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 5 / 49 = 0.10204 0.36456 ## InsertFragment 0 2 2 / 10 = 0.20000 0.94817 ## TwoFragment 0 0 0 / 5 = 0.00000 0.00000 ## CrossOver 0 0 0 / 6 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 1 1 0 / 16 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 13 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)G524 # TweakPsiSubtree removed gap before (T0547)G190 # generation 3: best score out of 20: T0547.try1 240.57941 cost/residue, 2276 clashes 0.17801 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 1 / 1 = 1.00000 0.03120 ## JiggleSegment 0 1 1 / 1 = 1.00000 0.30740 ## OptSubtree 0 0 0 / 0 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 3 2 / 3 = 0.66667 1.99915 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 3 = 0.33333 0.00079 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 3 / 3 = 1.00000 0.02660 ## TweakPsiSegment 0 1 1 / 2 = 0.50000 0.00884 ## TweakPsiPhiSubtree 0 1 1 / 1 = 1.00000 0.02649 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 1 / 2 = 0.50000 0.01093 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 1 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 0 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 1 2 / 8 = 0.25000 0.01740 ## ClashingRotamer 0 0 0 / 5 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 5 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 3 5 / 20 = 0.25000 1.74821 ## CloseGap 0 3 6 / 16 = 0.37500 0.25195 ## HealGap 0 7 0 / 17 = 0.00000 0.00000 ## MoveGap 0 7 10 / 29 = 0.34483 3.87362 ## ReduceConstraint 0 0 1 / 17 = 0.05882 0.19275 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 3 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 8 / 75 = 0.10667 0.26836 ## InsertFragment 0 3 3 / 15 = 0.20000 0.86915 ## TwoFragment 0 0 0 / 11 = 0.00000 0.00000 ## CrossOver 0 0 0 / 11 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 1 1 0 / 18 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 21 = 0.14286 0.27808 # TweakPsiSubtree removed gap before (T0547)I540 # TweakPsiSubtree removed gap before (T0547)T390 # generation 4: best score out of 20: T0547.try1 231.30305 cost/residue, 1943 clashes 0.16179 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 1 / 1 = 1.00000 0.03120 ## JiggleSegment 0 1 2 / 2 = 1.00000 0.18036 ## OptSubtree 0 0 0 / 1 = 0.00000 0.00000 ## OptSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 3 3 / 5 = 0.60000 1.79762 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 3 = 0.33333 0.00079 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 3 / 4 = 0.75000 0.01995 ## TweakPsiSegment 0 2 2 / 3 = 0.66667 0.04667 ## TweakPsiPhiSubtree 0 1 1 / 1 = 1.00000 0.02649 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 1 / 2 = 0.50000 0.01093 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 2 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 0 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 2 3 / 10 = 0.30000 0.06697 ## ClashingRotamer 0 1 0 / 7 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 6 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 6 8 / 25 = 0.32000 1.68765 ## CloseGap 0 7 10 / 20 = 0.50000 0.59166 ## HealGap 0 8 0 / 22 = 0.00000 0.00000 ## MoveGap 0 7 10 / 37 = 0.27027 3.03608 ## ReduceConstraint 0 0 1 / 23 = 0.04348 0.14247 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 5 = 0.00000 0.00000 ## InsertSpecificFragment 0 15 10 / 100 = 0.10000 0.22221 ## InsertFragment 0 4 4 / 21 = 0.19048 1.06256 ## TwoFragment 0 0 0 / 18 = 0.00000 0.00000 ## CrossOver 0 0 0 / 15 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 1 1 0 / 22 = 0.00000 0.00000 ## ReduceClash 0 5 4 / 30 = 0.13333 0.19801 # BackrubGuts cancelled---proline or break # generation 5: best score out of 20: T0547.try1 230.43961 cost/residue, 1899 clashes 0.16158 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 1 / 1 = 1.00000 0.03120 ## JiggleSegment 0 1 2 / 3 = 0.66667 0.12024 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 8 = 0.50000 1.36697 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 3 = 0.33333 0.00079 ## TweakPhiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 3 / 4 = 0.75000 0.01995 ## TweakPsiSegment 0 2 2 / 3 = 0.66667 0.04667 ## TweakPsiPhiSubtree 0 1 1 / 1 = 1.00000 0.02649 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 1 / 3 = 0.33333 0.00728 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 4 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 0 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 1 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 3 5 / 13 = 0.38462 0.06044 ## ClashingRotamer 0 1 0 / 7 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 7 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 8 9 / 31 = 0.29032 1.38886 ## CloseGap 0 8 12 / 26 = 0.46154 0.48312 ## HealGap 0 9 0 / 26 = 0.00000 0.00000 ## MoveGap 0 12 11 / 48 = 0.22917 2.36443 ## ReduceConstraint 0 0 1 / 26 = 0.03846 0.12603 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 6 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 13 / 124 = 0.10484 0.22939 ## InsertFragment 0 4 5 / 30 = 0.16667 0.83432 ## TwoFragment 0 0 0 / 24 = 0.00000 0.00000 ## CrossOver 0 0 0 / 16 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 1 1 0 / 28 = 0.00000 0.00000 ## ReduceClash 0 5 4 / 35 = 0.11429 0.16972 # TweakPsiSubtree removed gap before (T0547)E26 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)L563 # TweakPsiSubtree removed gap before (T0547)P472 # generation 6: best score out of 20: T0547.try1 225.43919 cost/residue, 1813 clashes 0.17919 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 1 / 1 = 1.00000 0.03120 ## JiggleSegment 0 1 2 / 4 = 0.50000 0.09018 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 9 = 0.44444 1.21508 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 3 = 0.33333 0.00079 ## TweakPhiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 3 / 4 = 0.75000 0.01995 ## TweakPsiSegment 0 5 5 / 7 = 0.71429 0.28421 ## TweakPsiPhiSubtree 0 1 1 / 1 = 1.00000 0.02649 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 1 / 3 = 0.33333 0.00728 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 4 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 0 1 0 / 2 = 0.00000 0.00000 ## BigBackrub 1 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 3 5 / 16 = 0.31250 0.04911 ## ClashingRotamer 0 1 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 8 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 8 9 / 37 = 0.24324 1.16364 ## CloseGap 0 9 12 / 31 = 0.38710 0.40520 ## HealGap 0 11 0 / 29 = 0.00000 0.00000 ## MoveGap 0 14 14 / 56 = 0.25000 2.07285 ## ReduceConstraint 0 0 1 / 29 = 0.03448 0.11299 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 9 = 0.00000 0.00000 ## InsertSpecificFragment 0 26 18 / 146 = 0.12329 0.26047 ## InsertFragment 0 8 10 / 43 = 0.23256 0.74361 ## TwoFragment 0 0 0 / 34 = 0.00000 0.00000 ## CrossOver 0 0 0 / 16 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 1 1 0 / 35 = 0.00000 0.00000 ## ReduceClash 0 6 5 / 38 = 0.13158 0.32808 # TweakPhi removed gap before (T0547)N123 # TweakPhi removed gap before (T0547)L38 # generation 7: best score out of 20: T0547.try1 224.43076 cost/residue, 1933 clashes 0.20497 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 1 / 3 = 0.33333 0.01040 ## JiggleSegment 0 1 2 / 4 = 0.50000 0.09018 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 14 = 0.28571 0.78112 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 2 / 4 = 0.50000 0.08060 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 3 / 4 = 0.75000 0.01995 ## TweakPsiSegment 0 5 5 / 7 = 0.71429 0.28421 ## TweakPsiPhiSubtree 1 1 1 / 1 = 1.00000 0.02649 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 1 / 3 = 0.33333 0.00728 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 4 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 0 2 1 / 4 = 0.25000 0.00288 ## BigBackrub 1 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 4 5 / 19 = 0.26316 0.04136 ## ClashingRotamer 0 1 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 11 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 10 11 / 47 = 0.23404 0.93358 ## CloseGap 0 10 12 / 39 = 0.30769 0.32208 ## HealGap 0 11 0 / 32 = 0.00000 0.00000 ## MoveGap 0 15 16 / 63 = 0.25397 1.85862 ## ReduceConstraint 0 0 1 / 35 = 0.02857 0.09362 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 10 = 0.00000 0.00000 ## InsertSpecificFragment 0 30 22 / 163 = 0.13497 0.24658 ## InsertFragment 0 8 10 / 48 = 0.20833 0.66615 ## TwoFragment 0 0 0 / 41 = 0.00000 0.00000 ## CrossOver 0 0 0 / 18 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 1 1 1 / 42 = 0.02381 0.00184 ## ReduceClash 0 9 7 / 46 = 0.15217 0.35078 # TweakPsiPhi removed gap before (T0547)K17 # TweakPhi removed gap before (T0547)K304 # generation 8: best score out of 20: T0547.try1 213.21394 cost/residue, 1886 clashes 0.20979 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 1 / 3 = 0.33333 0.01040 ## JiggleSegment 0 2 2 / 6 = 0.33333 0.06012 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 15 = 0.26667 0.72905 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 3 / 5 = 0.60000 0.09248 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 3 / 4 = 0.75000 0.01995 ## TweakPsiSegment 0 5 5 / 7 = 0.71429 0.28421 ## TweakPsiPhiSubtree 1 1 1 / 1 = 1.00000 0.02649 ## TweakPsiPhiSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 1 / 3 = 0.33333 0.00728 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 5 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 0 4 2 / 6 = 0.33333 0.00378 ## BigBackrub 1 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 4 5 / 19 = 0.26316 0.04136 ## ClashingRotamer 0 1 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 13 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 11 12 / 53 = 0.22642 0.82828 ## CloseGap 0 11 12 / 41 = 0.29268 0.30637 ## HealGap 0 12 0 / 37 = 0.00000 0.00000 ## MoveGap 0 16 17 / 71 = 0.23944 1.66316 ## ReduceConstraint 0 0 2 / 45 = 0.04444 0.08223 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 33 25 / 183 = 0.13661 0.26870 ## InsertFragment 0 11 14 / 63 = 0.22222 0.72629 ## TwoFragment 0 0 0 / 45 = 0.00000 0.00000 ## CrossOver 0 0 0 / 21 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 1 2 1 / 52 = 0.01923 0.00149 ## ReduceClash 0 9 7 / 51 = 0.13725 0.31639 # TweakPsiSubtree removed gap before (T0547)T482 # TweakPsiPhi removed gap before (T0547)Y255 # TweakPhi removed gap before (T0547)K17 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)E576 # generation 9: best score out of 20: T0547.try1 213.18642 cost/residue, 1886 clashes 0.21747 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 1 / 3 = 0.33333 0.01040 ## JiggleSegment 0 2 2 / 6 = 0.33333 0.06012 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 15 = 0.26667 0.72905 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 3 / 6 = 0.50000 0.07707 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 4 3 / 5 = 0.60000 0.01596 ## TweakPsiSegment 0 5 6 / 8 = 0.75000 0.32996 ## TweakPsiPhiSubtree 1 1 2 / 2 = 1.00000 0.02542 ## TweakPsiPhiSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 1 / 3 = 0.33333 0.00728 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 5 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 1 4 3 / 7 = 0.42857 0.00482 ## BigBackrub 1 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 4 6 / 20 = 0.30000 0.03979 ## ClashingRotamer 0 2 0 / 11 = 0.00000 0.00000 ## ClusteredRotamer 1 4 0 / 18 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 13 13 / 59 = 0.22034 0.86062 ## CloseGap 0 14 12 / 49 = 0.24490 0.25635 ## HealGap 0 15 0 / 46 = 0.00000 0.00000 ## MoveGap 0 19 19 / 81 = 0.23457 1.45938 ## ReduceConstraint 0 0 2 / 46 = 0.04348 0.08044 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 35 27 / 210 = 0.12857 0.24131 ## InsertFragment 0 11 14 / 64 = 0.21875 0.71494 ## TwoFragment 0 1 0 / 53 = 0.00000 0.00000 ## CrossOver 1 0 0 / 22 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 1 2 1 / 62 = 0.01613 0.00125 ## ReduceClash 0 9 7 / 56 = 0.12500 0.28814 # TweakPsiSubtree removed gap before (T0547)E376 # TweakPsiSubtree removed gap before (T0547)S368 # TweakPsiSubtree removed gap before (T0547)A536 # TweakPsiSubtree removed gap before (T0547)C22 # TweakPhi removed gap before (T0547)Q89 # TweakPsiPhi removed gap before (T0547)S341 # generation 10: best score out of 20: T0547.try1 213.15588 cost/residue, 1886 clashes 0.21747 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 1 / 4 = 0.25000 0.00780 ## JiggleSegment 0 3 2 / 7 = 0.28571 0.05153 ## OptSubtree 0 0 0 / 8 = 0.00000 0.00000 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 16 = 0.25000 0.68348 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 3 / 7 = 0.42857 0.06606 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 4 3 / 6 = 0.50000 0.01330 ## TweakPsiSegment 0 7 7 / 11 = 0.63636 0.23998 ## TweakPsiPhiSubtree 1 2 3 / 3 = 1.00000 0.02713 ## TweakPsiPhiSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 1 / 3 = 0.33333 0.00728 ## TweakHbondSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 5 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 1 4 3 / 7 = 0.42857 0.00482 ## BigBackrub 1 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 4 6 / 20 = 0.30000 0.03979 ## ClashingRotamer 0 3 0 / 12 = 0.00000 0.00000 ## ClusteredRotamer 1 4 0 / 20 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 13 13 / 65 = 0.20000 0.78118 ## CloseGap 0 14 12 / 54 = 0.22222 0.23261 ## HealGap 0 18 0 / 53 = 0.00000 0.00000 ## MoveGap 0 20 21 / 92 = 0.22826 1.29417 ## ReduceConstraint 0 0 2 / 49 = 0.04082 0.07552 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 37 28 / 236 = 0.11864 0.21721 ## InsertFragment 0 11 14 / 73 = 0.19178 0.62680 ## TwoFragment 0 1 0 / 55 = 0.00000 0.00000 ## CrossOver 1 0 0 / 23 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 1 2 1 / 68 = 0.01471 0.00114 ## ReduceClash 0 10 8 / 62 = 0.12903 0.26126 # TweakPhi removed gap before (T0547)L117 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)I302 # TweakPsiPhi removed gap before (T0547)E37 # TweakPsiSubtree removed gap before (T0547)D401 # TweakPsiSubtree removed gap before (T0547)Y565 # TweakPhi removed gap before (T0547)F392 # TweakPhi removed gap before (T0547)N216 # generation 11: best score out of 20: T0547.try1 212.23253 cost/residue, 1992 clashes 0.16925 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 1 / 4 = 0.25000 0.00780 ## JiggleSegment 0 3 2 / 7 = 0.28571 0.05153 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 17 = 0.23529 0.64328 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 3 / 10 = 0.30000 0.04624 ## TweakPhiSegment 0 3 1 / 4 = 0.25000 0.03638 ## TweakPsiSubtree 0 5 3 / 7 = 0.42857 0.01140 ## TweakPsiSegment 0 8 8 / 13 = 0.61538 0.20743 ## TweakPsiPhiSubtree 1 2 4 / 4 = 1.00000 0.02905 ## TweakPsiPhiSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 1 / 3 = 0.33333 0.00728 ## TweakHbondSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 5 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 2 4 3 / 8 = 0.37500 0.00422 ## BigBackrub 1 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 6 6 / 23 = 0.26087 0.03460 ## ClashingRotamer 0 3 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 1 4 0 / 20 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 13 13 / 72 = 0.18056 0.70523 ## CloseGap 0 15 13 / 61 = 0.21311 0.22437 ## HealGap 0 18 0 / 55 = 0.00000 0.00000 ## MoveGap 0 21 24 / 104 = 0.23077 1.15572 ## ReduceConstraint 0 0 2 / 61 = 0.03279 0.06066 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 39 31 / 261 = 0.11877 0.20012 ## InsertFragment 0 12 15 / 78 = 0.19231 0.58667 ## TwoFragment 0 1 0 / 57 = 0.00000 0.00000 ## CrossOver 1 0 0 / 26 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 1 2 1 / 70 = 0.01429 0.00110 ## ReduceClash 0 10 8 / 66 = 0.12121 0.24543 # TweakPsiSubtree removed gap before (T0547)L563 # TweakPhi removed gap before (T0547)E320 # TweakPsiSubtree removed gap before (T0547)D401 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L332 # generation 12: best score out of 20: T0547.try1 212.18378 cost/residue, 2004 clashes 0.16925 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 4 = 0.25000 0.00545 ## JiggleSubtree 0 0 1 / 4 = 0.25000 0.00780 ## JiggleSegment 0 3 2 / 7 = 0.28571 0.05153 ## OptSubtree 0 0 0 / 11 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 23 = 0.17391 0.47547 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 4 / 11 = 0.36364 0.06006 ## TweakPhiSegment 0 3 1 / 4 = 0.25000 0.03638 ## TweakPsiSubtree 0 5 4 / 8 = 0.50000 0.00999 ## TweakPsiSegment 0 9 9 / 16 = 0.56250 0.17038 ## TweakPsiPhiSubtree 1 2 4 / 4 = 1.00000 0.02905 ## TweakPsiPhiSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 1 / 3 = 0.33333 0.00728 ## TweakHbondSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 5 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 3 5 3 / 9 = 0.33333 0.00375 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 8 7 / 25 = 0.28000 0.03378 ## ClashingRotamer 0 3 0 / 15 = 0.00000 0.00000 ## ClusteredRotamer 2 9 0 / 25 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 15 14 / 83 = 0.16867 0.61265 ## CloseGap 0 15 13 / 68 = 0.19118 0.20127 ## HealGap 0 19 0 / 59 = 0.00000 0.00000 ## MoveGap 0 21 24 / 116 = 0.20690 1.03616 ## ReduceConstraint 0 0 2 / 68 = 0.02941 0.05442 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 40 31 / 275 = 0.11273 0.18993 ## InsertFragment 0 12 15 / 82 = 0.18293 0.55805 ## TwoFragment 0 2 1 / 62 = 0.01613 0.00074 ## CrossOver 2 0 0 / 28 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 1 2 1 / 75 = 0.01333 0.00103 ## ReduceClash 0 10 8 / 70 = 0.11429 0.23140 # TweakPhi removed gap before (T0547)D316 # TweakPhi removed gap before (T0547)V331 # TweakPsiPhi removed gap before (T0547)D7 # TweakPhi removed gap before (T0547)T531 # TweakPsiSubtree removed gap before (T0547)E158 # TweakPhi removed gap before (T0547)G205 # TweakPsiPhi removed gap before (T0547)D434 # generation 13: best score out of 20: T0547.try1 211.22714 cost/residue, 1989 clashes 0.16803 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 4 = 0.25000 0.00545 ## JiggleSubtree 0 0 1 / 4 = 0.25000 0.00780 ## JiggleSegment 0 3 2 / 7 = 0.28571 0.05153 ## OptSubtree 0 0 0 / 13 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 28 = 0.14286 0.39056 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 8 5 / 14 = 0.35714 0.04823 ## TweakPhiSegment 0 4 1 / 5 = 0.20000 0.02910 ## TweakPsiSubtree 0 5 4 / 8 = 0.50000 0.00999 ## TweakPsiSegment 0 10 10 / 17 = 0.58824 0.21776 ## TweakPsiPhiSubtree 1 3 5 / 6 = 0.83333 0.02216 ## TweakPsiPhiSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 2 / 4 = 0.50000 0.04070 ## TweakHbondSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 5 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 3 5 3 / 10 = 0.30000 0.00338 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 8 7 / 25 = 0.28000 0.03378 ## ClashingRotamer 0 3 0 / 15 = 0.00000 0.00000 ## ClusteredRotamer 3 10 0 / 29 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 18 16 / 92 = 0.17391 0.55694 ## CloseGap 0 15 13 / 73 = 0.17808 0.18749 ## HealGap 0 19 0 / 63 = 0.00000 0.00000 ## MoveGap 0 22 25 / 125 = 0.20000 0.96303 ## ReduceConstraint 0 0 2 / 69 = 0.02899 0.05363 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 40 32 / 294 = 0.10884 0.17835 ## InsertFragment 0 12 15 / 91 = 0.16484 0.50286 ## TwoFragment 0 2 1 / 69 = 0.01449 0.00067 ## CrossOver 2 0 0 / 33 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 1 2 1 / 76 = 0.01316 0.00102 ## ReduceClash 0 11 8 / 75 = 0.10667 0.21598 # TweakPhi removed gap before (T0547)D3 # TweakPsiSubtree removed gap before (T0547)L563 # TweakPsiSubtree removed gap before (T0547)K543 # TweakPsiSubtree removed gap before (T0547)E488 # TweakPsiSubtree removed gap before (T0547)Y519 # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiSubtree removed gap before (T0547)D452 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPsiSubtree removed gap before (T0547)C22 # generation 14: best score out of 20: T0547.try1 210.46458 cost/residue, 1969 clashes 0.16934 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 4 = 0.25000 0.00545 ## JiggleSubtree 0 0 1 / 6 = 0.16667 0.00520 ## JiggleSegment 0 5 4 / 9 = 0.44444 0.10968 ## OptSubtree 0 0 0 / 13 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 30 = 0.13333 0.36452 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 1 9 5 / 15 = 0.33333 0.04501 ## TweakPhiSegment 0 4 1 / 5 = 0.20000 0.02910 ## TweakPsiSubtree 0 5 4 / 9 = 0.44444 0.00888 ## TweakPsiSegment 0 13 15 / 25 = 0.60000 0.23672 ## TweakPsiPhiSubtree 1 3 5 / 6 = 0.83333 0.02216 ## TweakPsiPhiSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 3 / 6 = 0.50000 0.03277 ## TweakHbondSegment 0 3 0 / 4 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 5 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 3 6 3 / 11 = 0.27273 0.00307 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 10 8 / 27 = 0.29630 0.03224 ## ClashingRotamer 0 3 0 / 15 = 0.00000 0.00000 ## ClusteredRotamer 4 10 0 / 31 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 20 17 / 100 = 0.17000 0.51731 ## CloseGap 0 15 13 / 79 = 0.16456 0.17325 ## HealGap 0 19 0 / 72 = 0.00000 0.00000 ## MoveGap 0 23 26 / 137 = 0.18978 0.88042 ## ReduceConstraint 0 1 3 / 73 = 0.04110 0.06452 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 40 33 / 314 = 0.10510 0.16701 ## InsertFragment 0 13 16 / 96 = 0.16667 0.48591 ## TwoFragment 0 2 1 / 73 = 0.01370 0.00063 ## CrossOver 2 0 0 / 35 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 2 3 2 / 78 = 0.02564 0.00407 ## ReduceClash 0 11 8 / 78 = 0.10256 0.20767 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)L116 # TweakPsiSubtree removed gap before (T0547)V277 # TweakPhi removed gap before (T0547)G549 # TweakPsiSubtree removed gap before (T0547)N141 # TweakPsiSubtree removed gap before (T0547)K582 # TweakPsiSubtree removed gap before (T0547)N67 # TweakPsiSubtree removed gap before (T0547)L499 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I540 # TweakPhi removed gap before (T0547)S608 # TweakPsiSubtree removed gap before (T0547)E285 # generation 15: best score out of 20: T0547.try1 210.33760 cost/residue, 2006 clashes 0.17156 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 4 = 0.25000 0.00545 ## JiggleSubtree 0 0 1 / 6 = 0.16667 0.00520 ## JiggleSegment 0 6 4 / 12 = 0.33333 0.08226 ## OptSubtree 0 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 0 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 32 = 0.12500 0.34174 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 1 11 5 / 17 = 0.29412 0.03972 ## TweakPhiSegment 0 5 2 / 6 = 0.33333 0.03523 ## TweakPsiSubtree 0 5 4 / 10 = 0.40000 0.00800 ## TweakPsiSegment 0 16 18 / 32 = 0.56250 0.19067 ## TweakPsiPhiSubtree 1 3 5 / 6 = 0.83333 0.02216 ## TweakPsiPhiSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 3 / 7 = 0.42857 0.02809 ## TweakHbondSegment 0 3 0 / 4 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 6 = 0.00000 0.00000 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 4 6 3 / 11 = 0.27273 0.00307 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 12 9 / 31 = 0.29032 0.03025 ## ClashingRotamer 0 4 1 / 18 = 0.05556 0.03010 ## ClusteredRotamer 4 11 0 / 33 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 20 17 / 105 = 0.16190 0.49267 ## CloseGap 0 15 13 / 83 = 0.15663 0.16490 ## HealGap 0 20 0 / 73 = 0.00000 0.00000 ## MoveGap 0 23 26 / 145 = 0.17931 0.83184 ## ReduceConstraint 0 1 3 / 77 = 0.03896 0.06117 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 41 33 / 332 = 0.09940 0.15796 ## InsertFragment 0 15 18 / 104 = 0.17308 0.45111 ## TwoFragment 0 2 1 / 81 = 0.01235 0.00057 ## CrossOver 2 0 0 / 38 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 2 3 2 / 81 = 0.02469 0.00392 ## ReduceClash 0 11 8 / 85 = 0.09412 0.19057 # TweakPsiSubtree removed gap before (T0547)N161 # TweakPsiSubtree removed gap before (T0547)A121 # TweakPsiSubtree removed gap before (T0547)I34 # TweakPhi removed gap before (T0547)H591 # TweakPsiPhi removed gap before (T0547)I140 # TweakPsiPhi removed gap before (T0547)R474 # TweakPsiPhi removed gap before (T0547)L557 # generation 16: best score out of 20: T0547.try1 209.59346 cost/residue, 1934 clashes 0.17152 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 4 = 0.25000 0.00545 ## JiggleSubtree 0 0 1 / 7 = 0.14286 0.00446 ## JiggleSegment 0 6 4 / 15 = 0.26667 0.06581 ## OptSubtree 0 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 0 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 36 = 0.11111 0.30377 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 1 11 5 / 17 = 0.29412 0.03972 ## TweakPhiSegment 0 6 2 / 7 = 0.28571 0.03020 ## TweakPsiSubtree 0 5 4 / 11 = 0.36364 0.00727 ## TweakPsiSegment 0 17 18 / 34 = 0.52941 0.17945 ## TweakPsiPhiSubtree 2 4 6 / 8 = 0.75000 0.02802 ## TweakPsiPhiSegment 0 1 1 / 4 = 0.25000 0.00564 ## TweakHbondSubtree 0 2 3 / 8 = 0.37500 0.02458 ## TweakHbondSegment 0 3 0 / 4 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 6 = 0.00000 0.00000 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 4 7 3 / 12 = 0.25000 0.00281 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 15 9 / 35 = 0.25714 0.02679 ## ClashingRotamer 0 4 1 / 19 = 0.05263 0.02852 ## ClusteredRotamer 4 11 0 / 33 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 21 20 / 111 = 0.18018 0.47172 ## CloseGap 0 16 14 / 87 = 0.16092 0.16788 ## HealGap 0 20 0 / 76 = 0.00000 0.00000 ## MoveGap 0 23 26 / 153 = 0.16993 0.78835 ## ReduceConstraint 0 1 3 / 87 = 0.03448 0.05414 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 42 34 / 346 = 0.09827 0.15317 ## InsertFragment 0 18 20 / 117 = 0.17094 0.40485 ## TwoFragment 0 2 1 / 86 = 0.01163 0.00053 ## CrossOver 2 1 1 / 42 = 0.02381 0.02557 ## DoubleCross 1 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 2 3 2 / 88 = 0.02273 0.00360 ## ReduceClash 0 11 8 / 88 = 0.09091 0.18407 # TweakPhi removed gap before (T0547)K102 # TweakPsiSubtree removed gap before (T0547)Y75 # TweakPhi removed gap before (T0547)L394 # TweakPsiPhi removed gap before (T0547)Y597 # TweakPhi removed gap before (T0547)N105 # TweakPhi removed gap before (T0547)I34 # TweakPsiPhi removed gap before (T0547)D393 # TweakPhi removed gap before (T0547)T531 # generation 17: best score out of 20: T0547.try1 209.40842 cost/residue, 1938 clashes 0.17835 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 2 / 5 = 0.40000 0.00939 ## JiggleSubtree 0 0 1 / 7 = 0.14286 0.00446 ## JiggleSegment 0 8 4 / 17 = 0.23529 0.05807 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 20 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 37 = 0.10811 0.29556 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 1 12 7 / 19 = 0.36842 0.04086 ## TweakPhiSegment 0 8 4 / 10 = 0.40000 0.02162 ## TweakPsiSubtree 0 5 4 / 11 = 0.36364 0.00727 ## TweakPsiSegment 0 17 18 / 35 = 0.51429 0.17432 ## TweakPsiPhiSubtree 3 6 6 / 10 = 0.60000 0.02242 ## TweakPsiPhiSegment 0 1 1 / 4 = 0.25000 0.00564 ## TweakHbondSubtree 0 2 3 / 8 = 0.37500 0.02458 ## TweakHbondSegment 0 3 0 / 5 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 6 = 0.00000 0.00000 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 4 8 3 / 13 = 0.23077 0.00260 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 15 9 / 35 = 0.25714 0.02679 ## ClashingRotamer 0 4 1 / 20 = 0.05000 0.02709 ## ClusteredRotamer 4 12 0 / 34 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 21 20 / 118 = 0.16949 0.44373 ## CloseGap 0 17 14 / 96 = 0.14583 0.15214 ## HealGap 0 20 0 / 81 = 0.00000 0.00000 ## MoveGap 0 23 26 / 164 = 0.15854 0.73547 ## ReduceConstraint 0 2 4 / 93 = 0.04301 0.06100 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 44 34 / 367 = 0.09264 0.14441 ## InsertFragment 0 18 20 / 120 = 0.16667 0.39473 ## TwoFragment 0 3 1 / 91 = 0.01099 0.00050 ## CrossOver 2 1 1 / 45 = 0.02222 0.02387 ## DoubleCross 1 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 2 3 2 / 92 = 0.02174 0.00345 ## ReduceClash 0 11 8 / 94 = 0.08511 0.17232 # TweakPsiSubtree removed gap before (T0547)R173 # TweakPhi removed gap before (T0547)L560 # TweakPsiSubtree removed gap before (T0547)L258 # TweakPsiPhi removed gap before (T0547)I55 # TweakPhi removed gap before (T0547)N297 # TweakPhi removed gap before (T0547)V300 # TweakPsiSubtree removed gap before (T0547)D486 # TweakPsiSubtree removed gap before (T0547)M229 # generation 18: best score out of 20: T0547.try1 209.39600 cost/residue, 1937 clashes 0.17833 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 3 / 6 = 0.50000 0.00951 ## JiggleSubtree 0 0 1 / 7 = 0.14286 0.00446 ## JiggleSegment 0 8 4 / 18 = 0.22222 0.05484 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 20 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 41 = 0.09756 0.26673 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 1 13 8 / 20 = 0.40000 0.03944 ## TweakPhiSegment 0 8 5 / 12 = 0.41667 0.02212 ## TweakPsiSubtree 0 5 4 / 12 = 0.33333 0.00666 ## TweakPsiSegment 0 19 20 / 39 = 0.51282 0.15964 ## TweakPsiPhiSubtree 3 7 6 / 11 = 0.54545 0.02038 ## TweakPsiPhiSegment 0 1 1 / 4 = 0.25000 0.00564 ## TweakHbondSubtree 0 3 3 / 9 = 0.33333 0.02185 ## TweakHbondSegment 0 3 0 / 5 = 0.00000 0.00000 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 6 = 0.00000 0.00000 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 4 8 3 / 13 = 0.23077 0.00260 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 17 9 / 38 = 0.23684 0.02468 ## ClashingRotamer 0 5 2 / 23 = 0.08696 0.02430 ## ClusteredRotamer 4 12 0 / 35 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 22 20 / 126 = 0.15873 0.41556 ## CloseGap 0 17 14 / 102 = 0.13725 0.14319 ## HealGap 0 20 0 / 81 = 0.00000 0.00000 ## MoveGap 0 23 26 / 174 = 0.14943 0.69320 ## ReduceConstraint 0 2 4 / 103 = 0.03883 0.05508 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 45 35 / 377 = 0.09284 0.14068 ## InsertFragment 0 19 20 / 129 = 0.15504 0.36719 ## TwoFragment 0 4 1 / 94 = 0.01064 0.00049 ## CrossOver 2 1 1 / 49 = 0.02041 0.02192 ## DoubleCross 1 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 2 3 2 / 96 = 0.02083 0.00330 ## ReduceClash 0 11 8 / 104 = 0.07692 0.15575 # TweakPsiPhi removed gap before (T0547)H233 # TweakPsiSubtree removed gap before (T0547)R439 # TweakPhi removed gap before (T0547)S581 # TweakPsiSubtree removed gap before (T0547)N297 # TweakPhi removed gap before (T0547)K353 # TweakPsiPhi removed gap before (T0547)A330 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPsiSubtree removed gap before (T0547)F204 # TweakPsiSubtree removed gap before (T0547)K352 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPsiPhi removed gap before (T0547)L339 # generation 19: best score out of 20: T0547.try1 208.96210 cost/residue, 1881 clashes 0.17075 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 3 / 8 = 0.37500 0.00713 ## JiggleSubtree 0 0 1 / 7 = 0.14286 0.00446 ## JiggleSegment 0 8 5 / 21 = 0.23810 0.05339 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 42 = 0.09524 0.26037 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 1 15 9 / 22 = 0.40909 0.03631 ## TweakPhiSegment 0 8 5 / 12 = 0.41667 0.02212 ## TweakPsiSubtree 0 7 5 / 14 = 0.35714 0.00585 ## TweakPsiSegment 0 21 23 / 43 = 0.53488 0.14691 ## TweakPsiPhiSubtree 5 8 6 / 13 = 0.46154 0.01724 ## TweakPsiPhiSegment 0 2 1 / 5 = 0.20000 0.00451 ## TweakHbondSubtree 0 4 4 / 10 = 0.40000 0.04143 ## TweakHbondSegment 0 3 0 / 5 = 0.00000 0.00000 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 7 = 0.00000 0.00000 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 4 8 3 / 13 = 0.23077 0.00260 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 17 9 / 39 = 0.23077 0.02404 ## ClashingRotamer 0 5 2 / 25 = 0.08000 0.02235 ## ClusteredRotamer 4 12 0 / 35 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 22 20 / 131 = 0.15267 0.39970 ## CloseGap 0 18 15 / 109 = 0.13761 0.13580 ## HealGap 0 20 0 / 83 = 0.00000 0.00000 ## MoveGap 0 23 26 / 178 = 0.14607 0.67763 ## ReduceConstraint 0 2 4 / 109 = 0.03670 0.05204 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 47 37 / 401 = 0.09227 0.13310 ## InsertFragment 0 19 20 / 138 = 0.14493 0.34324 ## TwoFragment 0 4 1 / 96 = 0.01042 0.00048 ## CrossOver 2 2 2 / 52 = 0.03846 0.02857 ## DoubleCross 1 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 2 3 2 / 101 = 0.01980 0.00314 ## ReduceClash 0 12 9 / 112 = 0.08036 0.15026 # TweakPsiPhi removed gap before (T0547)L47 # TweakPsiSubtree removed gap before (T0547)I157 # TweakPhi removed gap before (T0547)D401 # TweakPhi removed gap before (T0547)I23 # TweakPsiSubtree removed gap before (T0547)Y279 # generation 20: best score out of 20: T0547.try1 208.52171 cost/residue, 1906 clashes 0.17892 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 3 / 9 = 0.33333 0.00634 ## JiggleSubtree 0 0 1 / 7 = 0.14286 0.00446 ## JiggleSegment 0 9 6 / 22 = 0.27273 0.05763 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 45 = 0.08889 0.24302 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 1 15 9 / 23 = 0.39130 0.03473 ## TweakPhiSegment 0 8 5 / 13 = 0.38462 0.02041 ## TweakPsiSubtree 0 7 5 / 14 = 0.35714 0.00585 ## TweakPsiSegment 0 22 23 / 45 = 0.51111 0.14038 ## TweakPsiPhiSubtree 5 8 6 / 14 = 0.42857 0.01601 ## TweakPsiPhiSegment 0 2 1 / 5 = 0.20000 0.00451 ## TweakHbondSubtree 0 5 5 / 11 = 0.45455 0.05191 ## TweakHbondSegment 0 3 0 / 5 = 0.00000 0.00000 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 7 = 0.00000 0.00000 ## FixOmega 0 0 0 / 2 = 0.00000 0.00000 ## Backrub 4 9 3 / 14 = 0.21429 0.00241 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 18 9 / 42 = 0.21429 0.02233 ## ClashingRotamer 1 5 2 / 30 = 0.06667 0.01863 ## ClusteredRotamer 4 12 0 / 36 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 24 22 / 141 = 0.15603 0.37452 ## CloseGap 0 18 15 / 114 = 0.13158 0.12984 ## HealGap 0 21 0 / 88 = 0.00000 0.00000 ## MoveGap 0 24 26 / 186 = 0.13978 0.64848 ## ReduceConstraint 0 2 4 / 114 = 0.03509 0.04976 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 47 37 / 416 = 0.08894 0.12830 ## InsertFragment 0 19 20 / 147 = 0.13605 0.32223 ## TwoFragment 0 4 1 / 98 = 0.01020 0.00047 ## CrossOver 2 3 3 / 57 = 0.05263 0.04103 ## DoubleCross 1 1 1 / 7 = 0.14286 0.10429 ## CrossAndInsert 2 3 2 / 108 = 0.01852 0.00294 ## ReduceClash 0 12 9 / 115 = 0.07826 0.14634 # TweakPsiSubtree removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)K283 # TweakPsiPhi removed gap before (T0547)G111 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPsiSubtree removed gap before (T0547)L598 # TweakPsiPhi removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)E361 # generation 21: best score out of 20: T0547.try1 208.36618 cost/residue, 1904 clashes 0.17872 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 3 / 9 = 0.33333 0.00634 ## JiggleSubtree 0 0 1 / 7 = 0.14286 0.00446 ## JiggleSegment 0 9 6 / 22 = 0.27273 0.05763 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 47 = 0.08511 0.23268 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 1 15 9 / 23 = 0.39130 0.03473 ## TweakPhiSegment 0 8 5 / 13 = 0.38462 0.02041 ## TweakPsiSubtree 0 9 7 / 16 = 0.43750 0.03365 ## TweakPsiSegment 0 25 23 / 48 = 0.47917 0.13161 ## TweakPsiPhiSubtree 5 8 6 / 14 = 0.42857 0.01601 ## TweakPsiPhiSegment 0 2 2 / 7 = 0.28571 0.01912 ## TweakHbondSubtree 0 8 7 / 15 = 0.46667 0.05278 ## TweakHbondSegment 0 4 1 / 6 = 0.16667 0.01066 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 7 = 0.00000 0.00000 ## FixOmega 0 0 0 / 2 = 0.00000 0.00000 ## Backrub 4 9 3 / 14 = 0.21429 0.00241 ## BigBackrub 1 0 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 19 10 / 44 = 0.22727 0.02258 ## ClashingRotamer 1 5 2 / 31 = 0.06452 0.01803 ## ClusteredRotamer 4 13 1 / 38 = 0.02632 0.00013 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 25 23 / 152 = 0.15132 0.34809 ## CloseGap 0 18 15 / 115 = 0.13043 0.12872 ## HealGap 0 21 0 / 91 = 0.00000 0.00000 ## MoveGap 0 25 26 / 202 = 0.12871 0.59712 ## ReduceConstraint 0 2 4 / 120 = 0.03333 0.04727 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 47 37 / 433 = 0.08545 0.12326 ## InsertFragment 0 19 20 / 155 = 0.12903 0.30559 ## TwoFragment 0 4 1 / 100 = 0.01000 0.00046 ## CrossOver 2 3 3 / 60 = 0.05000 0.03898 ## DoubleCross 2 1 1 / 9 = 0.11111 0.08112 ## CrossAndInsert 2 3 2 / 112 = 0.01786 0.00283 ## ReduceClash 0 12 9 / 119 = 0.07563 0.14143 # TweakPsiSubtree removed gap before (T0547)L563 # TweakPsiSubtree removed gap before (T0547)H384 # TweakPsiSubtree removed gap before (T0547)I302 # TweakPsiSubtree removed gap before (T0547)M571 # TweakPhi removed gap before (T0547)Q588 # TweakPhi removed gap before (T0547)Q433 # generation 22: best score out of 20: T0547.try1 207.64906 cost/residue, 1836 clashes 0.17926 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 3 / 9 = 0.33333 0.00634 ## JiggleSubtree 0 1 2 / 9 = 0.22222 0.02946 ## JiggleSegment 0 10 6 / 24 = 0.25000 0.05282 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 47 = 0.08511 0.23268 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 1 16 9 / 24 = 0.37500 0.03329 ## TweakPhiSegment 1 10 7 / 15 = 0.46667 0.02104 ## TweakPsiSubtree 0 9 7 / 19 = 0.36842 0.02834 ## TweakPsiSegment 0 26 24 / 49 = 0.48980 0.12956 ## TweakPsiPhiSubtree 5 8 6 / 14 = 0.42857 0.01601 ## TweakPsiPhiSegment 0 2 2 / 7 = 0.28571 0.01912 ## TweakHbondSubtree 0 10 8 / 19 = 0.42105 0.04191 ## TweakHbondSegment 0 5 2 / 7 = 0.28571 0.00932 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 7 = 0.00000 0.00000 ## FixOmega 0 0 0 / 2 = 0.00000 0.00000 ## Backrub 4 9 3 / 14 = 0.21429 0.00241 ## BigBackrub 1 0 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 20 11 / 46 = 0.23913 0.03527 ## ClashingRotamer 1 5 2 / 34 = 0.05882 0.01644 ## ClusteredRotamer 4 13 1 / 38 = 0.02632 0.00013 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 25 23 / 161 = 0.14286 0.32863 ## CloseGap 0 19 16 / 121 = 0.13223 0.12914 ## HealGap 0 21 0 / 96 = 0.00000 0.00000 ## MoveGap 0 26 27 / 207 = 0.13043 0.58397 ## ReduceConstraint 0 2 4 / 124 = 0.03226 0.04575 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 48 39 / 454 = 0.08590 0.11945 ## InsertFragment 0 20 21 / 160 = 0.13125 0.29612 ## TwoFragment 0 4 1 / 103 = 0.00971 0.00045 ## CrossOver 2 3 3 / 66 = 0.04545 0.03543 ## DoubleCross 2 1 2 / 13 = 0.15385 0.06625 ## CrossAndInsert 2 3 2 / 115 = 0.01739 0.00276 ## ReduceClash 0 12 9 / 127 = 0.07087 0.13252 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)D494 # TweakPsiPhi removed gap before (T0547)G198 # TweakPhi removed gap before (T0547)L349 # TweakPhi removed gap before (T0547)L362 # TweakPhi removed gap before (T0547)E343 # TweakPsiSubtree removed gap before (T0547)S539 # TweakPhi removed gap before (T0547)E172 # TweakPsiSubtree removed gap before (T0547)F204 # TweakPhi removed gap before (T0547)K352 # TweakPsiPhi removed gap before (T0547)E361 # TweakPsiSubtree removed gap before (T0547)L217 # TweakPhi removed gap before (T0547)D466 # TweakPhi removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)L362 # TweakPhi removed gap before (T0547)I32 # generation 23: best score out of 20: T0547.try1 207.10968 cost/residue, 1915 clashes 0.17464 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 3 / 9 = 0.33333 0.00634 ## JiggleSubtree 0 1 3 / 11 = 0.27273 0.03086 ## JiggleSegment 0 11 6 / 27 = 0.22222 0.04695 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 51 = 0.07843 0.21443 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 2 19 10 / 31 = 0.32258 0.02590 ## TweakPhiSegment 1 10 9 / 17 = 0.52941 0.02562 ## TweakPsiSubtree 0 9 8 / 20 = 0.40000 0.03075 ## TweakPsiSegment 0 29 26 / 54 = 0.48148 0.11819 ## TweakPsiPhiSubtree 6 9 6 / 15 = 0.40000 0.01495 ## TweakPsiPhiSegment 0 3 3 / 8 = 0.37500 0.01876 ## TweakHbondSubtree 0 13 10 / 22 = 0.45455 0.08229 ## TweakHbondSegment 0 5 2 / 9 = 0.22222 0.00725 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 7 = 0.00000 0.00000 ## FixOmega 0 0 0 / 2 = 0.00000 0.00000 ## Backrub 4 10 3 / 15 = 0.20000 0.00225 ## BigBackrub 1 0 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 20 11 / 47 = 0.23404 0.03452 ## ClashingRotamer 1 5 2 / 36 = 0.05556 0.01552 ## ClusteredRotamer 4 14 1 / 39 = 0.02564 0.00012 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 25 23 / 165 = 0.13939 0.32067 ## CloseGap 0 19 16 / 123 = 0.13008 0.12704 ## HealGap 0 21 0 / 97 = 0.00000 0.00000 ## MoveGap 0 27 27 / 219 = 0.12329 0.55197 ## ReduceConstraint 0 2 4 / 129 = 0.03101 0.04397 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 49 40 / 468 = 0.08547 0.11620 ## InsertFragment 0 20 21 / 165 = 0.12727 0.28715 ## TwoFragment 0 4 1 / 108 = 0.00926 0.00043 ## CrossOver 2 3 3 / 67 = 0.04478 0.03491 ## DoubleCross 2 1 2 / 14 = 0.14286 0.06152 ## CrossAndInsert 2 3 2 / 122 = 0.01639 0.00260 ## ReduceClash 0 12 9 / 129 = 0.06977 0.13046 # TweakPsiSubtree removed gap before (T0547)A416 # TweakPsiPhi removed gap before (T0547)F453 # TweakPsiPhi removed gap before (T0547)N123 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPsiPhi removed gap before (T0547)I489 # TweakPhi removed gap before (T0547)L418 # TweakPhi removed gap before (T0547)M261 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPsiSubtree removed gap before (T0547)P335 # TweakPsiPhi removed gap before (T0547)S490 # generation 24: best score out of 20: T0547.try1 206.72559 cost/residue, 1743 clashes 0.18258 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 3 / 9 = 0.33333 0.00634 ## JiggleSubtree 0 2 4 / 13 = 0.30769 0.03275 ## JiggleSegment 0 12 7 / 29 = 0.24138 0.04378 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 52 = 0.07692 0.21030 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 2 19 10 / 32 = 0.31250 0.02509 ## TweakPhiSegment 1 11 10 / 18 = 0.55556 0.02859 ## TweakPsiSubtree 0 10 10 / 23 = 0.43478 0.04415 ## TweakPsiSegment 0 30 27 / 55 = 0.49091 0.11685 ## TweakPsiPhiSubtree 6 10 7 / 16 = 0.43750 0.01470 ## TweakPsiPhiSegment 0 4 3 / 11 = 0.27273 0.01365 ## TweakHbondSubtree 0 13 10 / 23 = 0.43478 0.07871 ## TweakHbondSegment 0 5 2 / 9 = 0.22222 0.00725 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 8 = 0.12500 0.00019 ## FixOmega 0 0 0 / 2 = 0.00000 0.00000 ## Backrub 4 10 3 / 15 = 0.20000 0.00225 ## BigBackrub 1 0 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 20 11 / 48 = 0.22917 0.03380 ## ClashingRotamer 1 6 2 / 39 = 0.05128 0.01433 ## ClusteredRotamer 4 14 1 / 39 = 0.02564 0.00012 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 26 24 / 171 = 0.14035 0.31394 ## CloseGap 0 21 18 / 132 = 0.13636 0.12683 ## HealGap 0 21 0 / 100 = 0.00000 0.00000 ## MoveGap 0 28 28 / 230 = 0.12174 0.52638 ## ReduceConstraint 0 2 4 / 133 = 0.03008 0.04265 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 50 41 / 485 = 0.08454 0.11223 ## InsertFragment 0 20 21 / 169 = 0.12426 0.28035 ## TwoFragment 0 4 1 / 114 = 0.00877 0.00040 ## CrossOver 2 3 3 / 73 = 0.04110 0.03204 ## DoubleCross 2 1 2 / 16 = 0.12500 0.05383 ## CrossAndInsert 2 3 2 / 128 = 0.01562 0.00248 ## ReduceClash 0 12 9 / 134 = 0.06716 0.12559 # TweakPsiSubtree removed gap before (T0547)I550 # TweakPhi removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)L49 # TweakPhi removed gap before (T0547)A536 # TweakPsiSubtree removed gap before (T0547)Q520 # TweakPsiSubtree removed gap before (T0547)K57 # TweakPhi removed gap before (T0547)N11 # TweakPhi removed gap before (T0547)E162 # generation 25: best score out of 20: T0547.try1 206.20750 cost/residue, 1855 clashes 0.17529 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 3 / 9 = 0.33333 0.00634 ## JiggleSubtree 0 2 4 / 14 = 0.28571 0.03041 ## JiggleSegment 0 12 7 / 31 = 0.22581 0.04096 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 54 = 0.07407 0.20251 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 2 19 10 / 33 = 0.30303 0.02433 ## TweakPhiSegment 2 13 11 / 21 = 0.52381 0.02483 ## TweakPsiSubtree 0 11 11 / 25 = 0.44000 0.04099 ## TweakPsiSegment 0 31 27 / 57 = 0.47368 0.11275 ## TweakPsiPhiSubtree 6 10 7 / 16 = 0.43750 0.01470 ## TweakPsiPhiSegment 0 4 3 / 11 = 0.27273 0.01365 ## TweakHbondSubtree 0 15 12 / 26 = 0.46154 0.07085 ## TweakHbondSegment 0 5 3 / 10 = 0.30000 0.00737 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 8 = 0.12500 0.00019 ## FixOmega 0 0 0 / 2 = 0.00000 0.00000 ## Backrub 4 11 3 / 16 = 0.18750 0.00211 ## BigBackrub 1 0 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 20 11 / 49 = 0.22449 0.03311 ## ClashingRotamer 1 7 3 / 42 = 0.07143 0.01684 ## ClusteredRotamer 4 15 1 / 41 = 0.02439 0.00012 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 26 24 / 177 = 0.13559 0.30330 ## CloseGap 0 24 22 / 139 = 0.15827 0.13002 ## HealGap 0 21 0 / 104 = 0.00000 0.00000 ## MoveGap 0 28 28 / 235 = 0.11915 0.51518 ## ReduceConstraint 0 2 4 / 139 = 0.02878 0.04081 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 51 42 / 503 = 0.08350 0.10829 ## InsertFragment 0 21 22 / 178 = 0.12360 0.26800 ## TwoFragment 0 4 1 / 116 = 0.00862 0.00040 ## CrossOver 2 4 3 / 78 = 0.03846 0.02998 ## DoubleCross 4 1 2 / 19 = 0.10526 0.04533 ## CrossAndInsert 2 3 2 / 131 = 0.01527 0.00242 ## ReduceClash 0 12 10 / 140 = 0.07143 0.12083 # TweakPsiSubtree removed gap before (T0547)S112 # TweakPhi removed gap before (T0547)E60 # TweakPsiSubtree removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)P315 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPhi removed gap before (T0547)E109 # TweakPsiSubtree removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)N443 # TweakPhi removed gap before (T0547)T239 # generation 26: best score out of 20: T0547.try1 205.90695 cost/residue, 1928 clashes 0.17238 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 5 / 12 = 0.41667 0.00633 ## JiggleSubtree 0 3 5 / 17 = 0.29412 0.03975 ## JiggleSegment 0 13 8 / 34 = 0.23529 0.05555 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 55 = 0.07273 0.19883 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 2 19 10 / 33 = 0.30303 0.02433 ## TweakPhiSegment 3 15 12 / 25 = 0.48000 0.02429 ## TweakPsiSubtree 0 11 11 / 25 = 0.44000 0.04099 ## TweakPsiSegment 0 34 28 / 62 = 0.45161 0.10792 ## TweakPsiPhiSubtree 6 10 7 / 16 = 0.43750 0.01470 ## TweakPsiPhiSegment 0 4 3 / 11 = 0.27273 0.01365 ## TweakHbondSubtree 0 16 12 / 28 = 0.42857 0.06579 ## TweakHbondSegment 0 5 3 / 12 = 0.25000 0.00614 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 2 / 9 = 0.22222 0.00204 ## FixOmega 0 0 0 / 2 = 0.00000 0.00000 ## Backrub 4 12 3 / 17 = 0.17647 0.00199 ## BigBackrub 1 0 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 21 13 / 51 = 0.25490 0.03305 ## ClashingRotamer 1 8 3 / 45 = 0.06667 0.01572 ## ClusteredRotamer 4 16 1 / 42 = 0.02381 0.00011 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 27 24 / 188 = 0.12766 0.28555 ## CloseGap 0 24 22 / 141 = 0.15603 0.12818 ## HealGap 0 21 0 / 108 = 0.00000 0.00000 ## MoveGap 0 28 28 / 243 = 0.11523 0.49822 ## ReduceConstraint 0 2 4 / 142 = 0.02817 0.03995 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 51 43 / 520 = 0.08269 0.10493 ## InsertFragment 0 22 23 / 187 = 0.12299 0.25663 ## TwoFragment 0 4 1 / 117 = 0.00855 0.00039 ## CrossOver 2 4 3 / 81 = 0.03704 0.02887 ## DoubleCross 4 1 2 / 20 = 0.10000 0.04306 ## CrossAndInsert 2 3 2 / 134 = 0.01493 0.00237 ## ReduceClash 0 12 10 / 145 = 0.06897 0.11666 # TweakPhi removed gap before (T0547)E507 # TweakPsiPhi removed gap before (T0547)G19 # TweakPsiSubtree removed gap before (T0547)V277 # TweakPsiSubtree removed gap before (T0547)E158 # TweakPsiSubtree removed gap before (T0547)F514 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPhi removed gap before (T0547)L54 # TweakPsiSubtree removed gap before (T0547)G252 # TweakPhi removed gap before (T0547)K267 # TweakPsiSubtree removed gap before (T0547)I16 # generation 27: best score out of 20: T0547.try1 204.96089 cost/residue, 2018 clashes 0.19143 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 5 / 12 = 0.41667 0.00633 ## JiggleSubtree 0 3 5 / 20 = 0.25000 0.03379 ## JiggleSegment 0 14 9 / 37 = 0.24324 0.05688 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 58 = 0.06897 0.18855 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 2 19 10 / 34 = 0.29412 0.02362 ## TweakPhiSegment 3 17 12 / 27 = 0.44444 0.02249 ## TweakPsiSubtree 0 11 11 / 28 = 0.39286 0.03660 ## TweakPsiSegment 0 36 30 / 65 = 0.46154 0.11645 ## TweakPsiPhiSubtree 6 11 7 / 17 = 0.41176 0.01383 ## TweakPsiPhiSegment 0 4 3 / 11 = 0.27273 0.01365 ## TweakHbondSubtree 0 18 14 / 30 = 0.46667 0.06145 ## TweakHbondSegment 0 6 3 / 13 = 0.23077 0.00567 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 2 / 9 = 0.22222 0.00204 ## FixOmega 0 0 0 / 2 = 0.00000 0.00000 ## Backrub 4 13 3 / 19 = 0.15789 0.00178 ## BigBackrub 1 0 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 21 13 / 51 = 0.25490 0.03305 ## ClashingRotamer 1 8 3 / 45 = 0.06667 0.01572 ## ClusteredRotamer 4 16 1 / 42 = 0.02381 0.00011 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 28 26 / 194 = 0.13402 0.28194 ## CloseGap 0 25 23 / 147 = 0.15646 0.12417 ## HealGap 0 21 0 / 112 = 0.00000 0.00000 ## MoveGap 0 28 28 / 252 = 0.11111 0.48043 ## ReduceConstraint 0 2 4 / 146 = 0.02740 0.03885 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 52 43 / 534 = 0.08052 0.10218 ## InsertFragment 0 22 23 / 197 = 0.11675 0.24360 ## TwoFragment 0 4 1 / 120 = 0.00833 0.00038 ## CrossOver 2 4 3 / 86 = 0.03488 0.02719 ## DoubleCross 4 1 2 / 22 = 0.09091 0.03915 ## CrossAndInsert 2 3 2 / 139 = 0.01439 0.00228 ## ReduceClash 0 12 10 / 149 = 0.06711 0.11353 # TweakPsiSubtree removed gap before (T0547)R173 # TweakPsiSubtree removed gap before (T0547)G549 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiSubtree removed gap before (T0547)Q437 # TweakPsiSubtree removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)N425 # TweakPsiSubtree removed gap before (T0547)E548 # TweakPsiSubtree removed gap before (T0547)G594 # TweakPsiPhi removed gap before (T0547)V331 # generation 28: best score out of 20: T0547.try1 204.86707 cost/residue, 2015 clashes 0.19095 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 6 / 13 = 0.46154 0.00606 ## JiggleSubtree 0 4 5 / 22 = 0.22727 0.03071 ## JiggleSegment 0 15 10 / 41 = 0.24390 0.05404 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 61 = 0.06557 0.17927 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 2 19 10 / 34 = 0.29412 0.02362 ## TweakPhiSegment 3 17 12 / 27 = 0.44444 0.02249 ## TweakPsiSubtree 0 12 12 / 31 = 0.38710 0.03334 ## TweakPsiSegment 0 39 34 / 72 = 0.47222 0.10975 ## TweakPsiPhiSubtree 6 12 7 / 18 = 0.38889 0.01306 ## TweakPsiPhiSegment 0 4 4 / 12 = 0.33333 0.01416 ## TweakHbondSubtree 0 20 16 / 35 = 0.45714 0.05394 ## TweakHbondSegment 0 7 4 / 15 = 0.26667 0.01117 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 3 / 11 = 0.27273 0.00171 ## FixOmega 0 0 0 / 3 = 0.00000 0.00000 ## Backrub 4 13 4 / 20 = 0.20000 0.00194 ## BigBackrub 1 0 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 22 13 / 53 = 0.24528 0.03180 ## ClashingRotamer 1 8 3 / 46 = 0.06522 0.01538 ## ClusteredRotamer 4 16 1 / 43 = 0.02326 0.00011 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 29 26 / 201 = 0.12935 0.27212 ## CloseGap 0 26 24 / 150 = 0.16000 0.12786 ## HealGap 0 21 0 / 114 = 0.00000 0.00000 ## MoveGap 0 28 28 / 258 = 0.10853 0.46925 ## ReduceConstraint 0 2 4 / 148 = 0.02703 0.03833 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 54 44 / 549 = 0.08015 0.09974 ## InsertFragment 0 23 23 / 204 = 0.11275 0.23524 ## TwoFragment 0 4 1 / 123 = 0.00813 0.00037 ## CrossOver 2 4 3 / 89 = 0.03371 0.02628 ## DoubleCross 4 1 2 / 27 = 0.07407 0.03190 ## CrossAndInsert 2 3 2 / 142 = 0.01408 0.00223 ## ReduceClash 0 12 10 / 156 = 0.06410 0.10844 # TweakPhi removed gap before (T0547)H329 # TweakPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)I462 # TweakPsiPhi removed gap before (T0547)T130 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)E343 # TweakPsiSubtree removed gap before (T0547)T559 # TweakPhi removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)G594 # TweakPsiSubtree removed gap before (T0547)V325 # TweakPsiSubtree removed gap before (T0547)L408 # TweakPsiPhi removed gap before (T0547)I23 # TweakPsiSubtree removed gap before (T0547)K44 # generation 29: best score out of 20: T0547.try1 204.21951 cost/residue, 1932 clashes 0.17812 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 6 / 15 = 0.40000 0.00525 ## JiggleSubtree 0 4 5 / 23 = 0.21739 0.02938 ## JiggleSegment 0 16 11 / 45 = 0.24444 0.05067 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 0 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 64 = 0.06250 0.17087 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 2 20 11 / 35 = 0.31429 0.02431 ## TweakPhiSegment 3 19 13 / 31 = 0.41935 0.02718 ## TweakPsiSubtree 0 12 13 / 35 = 0.37143 0.03079 ## TweakPsiSegment 0 40 35 / 75 = 0.46667 0.10657 ## TweakPsiPhiSubtree 6 12 7 / 19 = 0.36842 0.01238 ## TweakPsiPhiSegment 0 5 5 / 14 = 0.35714 0.01539 ## TweakHbondSubtree 0 22 16 / 38 = 0.42105 0.04968 ## TweakHbondSegment 0 7 4 / 16 = 0.25000 0.01047 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 3 / 11 = 0.27273 0.00171 ## FixOmega 0 0 0 / 3 = 0.00000 0.00000 ## Backrub 4 13 4 / 20 = 0.20000 0.00194 ## BigBackrub 2 0 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 24 15 / 55 = 0.27273 0.03119 ## ClashingRotamer 1 8 3 / 46 = 0.06522 0.01538 ## ClusteredRotamer 4 16 1 / 45 = 0.02222 0.00011 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 29 26 / 205 = 0.12683 0.26681 ## CloseGap 0 28 25 / 155 = 0.16129 0.12509 ## HealGap 0 21 0 / 116 = 0.00000 0.00000 ## MoveGap 0 28 28 / 264 = 0.10606 0.45859 ## ReduceConstraint 0 2 4 / 152 = 0.02632 0.03732 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 19 = 0.00000 0.00000 ## InsertSpecificFragment 0 55 45 / 565 = 0.07965 0.09823 ## InsertFragment 0 24 24 / 207 = 0.11594 0.23539 ## TwoFragment 0 4 1 / 127 = 0.00787 0.00036 ## CrossOver 2 4 3 / 94 = 0.03191 0.02488 ## DoubleCross 4 1 2 / 27 = 0.07407 0.03190 ## CrossAndInsert 2 3 2 / 150 = 0.01333 0.00211 ## ReduceClash 0 12 10 / 162 = 0.06173 0.10442 # TweakPsiSubtree removed gap before (T0547)K68 # TweakPsiPhi removed gap before (T0547)R474 # TweakPsiSubtree removed gap before (T0547)N508 # TweakPsiSubtree removed gap before (T0547)I578 # TweakPhi removed gap before (T0547)V584 # TweakPsiSubtree removed gap before (T0547)G78 # TweakPsiPhi removed gap before (T0547)D40 # TweakPsiSubtree removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)K20 # generation 30: best score out of 20: T0547.try1 203.93764 cost/residue, 1941 clashes 0.17198 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 7 6 / 16 = 0.37500 0.00492 ## JiggleSubtree 0 4 5 / 25 = 0.20000 0.02703 ## JiggleSegment 0 16 11 / 47 = 0.23404 0.04851 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 1 1 / 29 = 0.03448 0.00374 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 67 = 0.05970 0.16322 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 3 20 12 / 36 = 0.33333 0.02492 ## TweakPhiSegment 3 19 13 / 31 = 0.41935 0.02718 ## TweakPsiSubtree 0 13 15 / 37 = 0.40541 0.02924 ## TweakPsiSegment 0 44 37 / 80 = 0.46250 0.10548 ## TweakPsiPhiSubtree 6 12 7 / 19 = 0.36842 0.01238 ## TweakPsiPhiSegment 0 5 6 / 16 = 0.37500 0.01365 ## TweakHbondSubtree 0 23 18 / 40 = 0.45000 0.05003 ## TweakHbondSegment 0 8 5 / 17 = 0.29412 0.00987 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 4 / 13 = 0.30769 0.00308 ## FixOmega 0 0 0 / 3 = 0.00000 0.00000 ## Backrub 4 13 4 / 20 = 0.20000 0.00194 ## BigBackrub 2 0 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 25 15 / 58 = 0.25862 0.02958 ## ClashingRotamer 1 8 3 / 46 = 0.06522 0.01538 ## ClusteredRotamer 4 16 1 / 46 = 0.02174 0.00010 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 30 27 / 215 = 0.12558 0.25667 ## CloseGap 0 30 25 / 165 = 0.15152 0.11751 ## HealGap 0 21 0 / 121 = 0.00000 0.00000 ## MoveGap 0 28 28 / 273 = 0.10256 0.44347 ## ReduceConstraint 0 2 4 / 157 = 0.02548 0.03613 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 55 45 / 572 = 0.07867 0.09703 ## InsertFragment 0 25 25 / 210 = 0.11905 0.23291 ## TwoFragment 0 4 1 / 130 = 0.00769 0.00035 ## CrossOver 3 5 4 / 102 = 0.03922 0.02318 ## DoubleCross 4 1 2 / 28 = 0.07143 0.03076 ## CrossAndInsert 2 3 2 / 154 = 0.01299 0.00206 ## ReduceClash 0 12 10 / 166 = 0.06024 0.10190 # TweakPsiSubtree removed gap before (T0547)D480 # TweakPsiSubtree removed gap before (T0547)L48 # TweakPhi removed gap before (T0547)L465 # TweakPhi removed gap before (T0547)L234 # TweakPsiSubtree removed gap before (T0547)I157 # TweakPsiPhi removed gap before (T0547)K171 # TweakPhi removed gap before (T0547)L337 # TweakPhi removed gap before (T0547)A276 # TweakPsiSubtree removed gap before (T0547)E386 # generation 31: best score out of 20: T0547.try1 203.60219 cost/residue, 1918 clashes 0.17734 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 7 / 17 = 0.41176 0.00642 ## JiggleSubtree 0 5 5 / 28 = 0.17857 0.02413 ## JiggleSegment 0 16 11 / 48 = 0.22917 0.04750 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 1 1 / 31 = 0.03226 0.00350 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 70 = 0.05714 0.15622 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 3 21 13 / 37 = 0.35135 0.02533 ## TweakPhiSegment 3 21 15 / 34 = 0.44118 0.02737 ## TweakPsiSubtree 0 13 15 / 38 = 0.39474 0.02847 ## TweakPsiSegment 0 47 39 / 83 = 0.46988 0.10917 ## TweakPsiPhiSubtree 6 12 7 / 20 = 0.35000 0.01176 ## TweakPsiPhiSegment 1 6 7 / 17 = 0.41176 0.01319 ## TweakHbondSubtree 0 24 19 / 43 = 0.44186 0.04689 ## TweakHbondSegment 0 8 5 / 17 = 0.29412 0.00987 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 5 / 14 = 0.35714 0.00360 ## FixOmega 0 0 0 / 3 = 0.00000 0.00000 ## Backrub 4 13 4 / 20 = 0.20000 0.00194 ## BigBackrub 2 0 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 25 15 / 58 = 0.25862 0.02958 ## ClashingRotamer 1 9 3 / 47 = 0.06383 0.01505 ## ClusteredRotamer 4 16 1 / 47 = 0.02128 0.00010 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 30 27 / 224 = 0.12054 0.24636 ## CloseGap 0 30 25 / 169 = 0.14793 0.11473 ## HealGap 0 21 0 / 125 = 0.00000 0.00000 ## MoveGap 0 28 28 / 280 = 0.10000 0.43238 ## ReduceConstraint 0 2 4 / 161 = 0.02484 0.03523 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 55 45 / 591 = 0.07614 0.09391 ## InsertFragment 0 25 25 / 221 = 0.11312 0.22132 ## TwoFragment 0 4 1 / 131 = 0.00763 0.00035 ## CrossOver 4 5 4 / 103 = 0.03883 0.02296 ## DoubleCross 4 1 2 / 30 = 0.06667 0.02871 ## CrossAndInsert 3 3 2 / 157 = 0.01274 0.00202 ## ReduceClash 0 13 10 / 174 = 0.05747 0.09722 # TweakPhi removed gap before (T0547)H568 # TweakPhi removed gap before (T0547)Y396 # TweakPsiSubtree removed gap before (T0547)P472 # TweakPsiSubtree removed gap before (T0547)I166 # TweakPsiPhi removed gap before (T0547)L54 # TweakPsiSubtree removed gap before (T0547)S581 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)K352 # TweakPhi removed gap before (T0547)I169 # TweakPsiPhi removed gap before (T0547)G252 # TweakPsiPhi removed gap before (T0547)W454 # TweakPsiPhi removed gap before (T0547)V98 # TweakPsiSubtree removed gap before (T0547)K587 # TweakPsiSubtree removed gap before (T0547)E546 # generation 32: best score out of 20: T0547.try1 203.39307 cost/residue, 1908 clashes 0.16250 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 7 / 17 = 0.41176 0.00642 ## JiggleSubtree 0 6 6 / 31 = 0.19355 0.02459 ## JiggleSegment 0 18 13 / 50 = 0.26000 0.05499 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 1 1 / 32 = 0.03125 0.00339 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 73 = 0.05479 0.14980 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 3 21 14 / 38 = 0.36842 0.02541 ## TweakPhiSegment 3 22 16 / 36 = 0.44444 0.02786 ## TweakPsiSubtree 0 15 17 / 43 = 0.39535 0.02533 ## TweakPsiSegment 0 47 39 / 83 = 0.46988 0.10917 ## TweakPsiPhiSubtree 6 13 8 / 21 = 0.38095 0.01600 ## TweakPsiPhiSegment 1 7 8 / 21 = 0.38095 0.01108 ## TweakHbondSubtree 1 25 20 / 44 = 0.45455 0.05079 ## TweakHbondSegment 0 9 7 / 19 = 0.36842 0.00937 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 8 / 17 = 0.47059 0.00397 ## FixOmega 0 0 0 / 3 = 0.00000 0.00000 ## Backrub 5 13 4 / 20 = 0.20000 0.00194 ## BigBackrub 2 0 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 25 15 / 59 = 0.25424 0.02907 ## ClashingRotamer 1 9 3 / 47 = 0.06383 0.01505 ## ClusteredRotamer 4 17 2 / 49 = 0.04082 0.00144 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 31 28 / 229 = 0.12227 0.24186 ## CloseGap 0 31 26 / 174 = 0.14943 0.11263 ## HealGap 0 21 0 / 131 = 0.00000 0.00000 ## MoveGap 0 29 29 / 289 = 0.10035 0.41895 ## ReduceConstraint 0 2 4 / 164 = 0.02439 0.03459 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 56 45 / 605 = 0.07438 0.09174 ## InsertFragment 0 26 26 / 232 = 0.11207 0.21121 ## TwoFragment 0 4 2 / 135 = 0.01481 0.00040 ## CrossOver 4 6 5 / 106 = 0.04717 0.02639 ## DoubleCross 4 1 2 / 30 = 0.06667 0.02871 ## CrossAndInsert 3 3 2 / 161 = 0.01242 0.00197 ## ReduceClash 0 13 10 / 178 = 0.05618 0.09503 # TweakPhi removed gap before (T0547)S188 # TweakPhi removed gap before (T0547)L163 # TweakPhi removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)S208 # TweakPsiSubtree removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)L266 # generation 33: best score out of 20: T0547.try1 202.67108 cost/residue, 1831 clashes 0.19311 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 7 / 17 = 0.41176 0.00642 ## JiggleSubtree 0 8 8 / 33 = 0.24242 0.03992 ## JiggleSegment 0 18 13 / 52 = 0.25000 0.05287 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 1 1 / 32 = 0.03125 0.00339 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 74 = 0.05405 0.14778 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 3 22 14 / 39 = 0.35897 0.02475 ## TweakPhiSegment 3 23 16 / 38 = 0.42105 0.02640 ## TweakPsiSubtree 0 16 18 / 45 = 0.40000 0.02423 ## TweakPsiSegment 0 49 40 / 85 = 0.47059 0.10662 ## TweakPsiPhiSubtree 6 13 8 / 21 = 0.38095 0.01600 ## TweakPsiPhiSegment 1 7 8 / 21 = 0.38095 0.01108 ## TweakHbondSubtree 1 26 22 / 48 = 0.45833 0.04961 ## TweakHbondSegment 0 10 8 / 20 = 0.40000 0.02571 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 9 / 19 = 0.47368 0.00356 ## FixOmega 0 0 0 / 3 = 0.00000 0.00000 ## Backrub 5 13 5 / 21 = 0.23810 0.00270 ## BigBackrub 2 0 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 25 15 / 61 = 0.24590 0.02812 ## ClashingRotamer 1 10 4 / 50 = 0.08000 0.01605 ## ClusteredRotamer 4 17 2 / 52 = 0.03846 0.00136 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 31 28 / 233 = 0.12017 0.23771 ## CloseGap 0 34 29 / 184 = 0.15761 0.11379 ## HealGap 0 21 0 / 133 = 0.00000 0.00000 ## MoveGap 0 29 29 / 294 = 0.09864 0.41182 ## ReduceConstraint 0 2 4 / 167 = 0.02395 0.03397 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 56 45 / 623 = 0.07223 0.08909 ## InsertFragment 0 27 27 / 242 = 0.11157 0.20295 ## TwoFragment 0 4 2 / 140 = 0.01429 0.00039 ## CrossOver 4 6 5 / 108 = 0.04630 0.02590 ## DoubleCross 4 1 2 / 33 = 0.06061 0.02610 ## CrossAndInsert 3 3 2 / 165 = 0.01212 0.00192 ## ReduceClash 0 13 10 / 181 = 0.05525 0.09346 # TweakPhi removed gap before (T0547)Y366 # TweakPsiSubtree removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)R474 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPhi removed gap before (T0547)V397 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPsiSubtree removed gap before (T0547)A121 # TweakPsiSubtree removed gap before (T0547)Q458 # TweakPsiPhi removed gap before (T0547)T413 # generation 34: best score out of 20: T0547.try1 202.60393 cost/residue, 1832 clashes 0.19311 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 9 / 20 = 0.45000 0.02925 ## JiggleSubtree 0 10 8 / 36 = 0.22222 0.03660 ## JiggleSegment 0 18 13 / 54 = 0.24074 0.05091 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 1 1 / 34 = 0.02941 0.00319 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 74 = 0.05405 0.14778 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 3 22 14 / 40 = 0.35000 0.02413 ## TweakPhiSegment 3 24 17 / 40 = 0.42500 0.02517 ## TweakPsiSubtree 0 16 18 / 47 = 0.38298 0.02320 ## TweakPsiSegment 0 52 43 / 90 = 0.47778 0.10146 ## TweakPsiPhiSubtree 6 14 8 / 22 = 0.36364 0.01527 ## TweakPsiPhiSegment 1 7 8 / 21 = 0.38095 0.01108 ## TweakHbondSubtree 1 26 22 / 50 = 0.44000 0.04762 ## TweakHbondSegment 0 10 8 / 21 = 0.38095 0.02449 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 9 / 21 = 0.42857 0.00322 ## FixOmega 0 0 0 / 3 = 0.00000 0.00000 ## Backrub 5 14 6 / 22 = 0.27273 0.00370 ## BigBackrub 2 0 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 26 16 / 63 = 0.25397 0.02810 ## ClashingRotamer 1 10 4 / 51 = 0.07843 0.01574 ## ClusteredRotamer 4 18 2 / 53 = 0.03774 0.00133 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 31 28 / 240 = 0.11667 0.23078 ## CloseGap 0 35 29 / 197 = 0.14721 0.10628 ## HealGap 0 21 0 / 136 = 0.00000 0.00000 ## MoveGap 0 29 29 / 300 = 0.09667 0.40359 ## ReduceConstraint 0 2 4 / 172 = 0.02326 0.03298 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 56 46 / 637 = 0.07221 0.08731 ## InsertFragment 0 27 27 / 249 = 0.10843 0.19724 ## TwoFragment 0 4 2 / 143 = 0.01399 0.00038 ## CrossOver 4 6 5 / 109 = 0.04587 0.02566 ## DoubleCross 4 1 2 / 33 = 0.06061 0.02610 ## CrossAndInsert 3 3 2 / 169 = 0.01183 0.00188 ## ReduceClash 0 15 12 / 187 = 0.06417 0.09216 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPhi removed gap before (T0547)E535 # TweakPsiSubtree removed gap before (T0547)Y255 # TweakPsiPhi removed gap before (T0547)W454 # TweakPsiSubtree removed gap before (T0547)V331 # TweakPhi removed gap before (T0547)A405 # TweakPsiPhi removed gap before (T0547)I302 # generation 35: best score out of 20: T0547.try1 202.46196 cost/residue, 1821 clashes 0.17827 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 13 / 28 = 0.46429 0.02300 ## JiggleSubtree 0 10 8 / 38 = 0.21053 0.03467 ## JiggleSegment 0 18 13 / 59 = 0.22034 0.04660 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 1 1 / 37 = 0.02703 0.00294 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 74 = 0.05405 0.14778 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 4 22 15 / 41 = 0.36585 0.02369 ## TweakPhiSegment 4 24 17 / 41 = 0.41463 0.02455 ## TweakPsiSubtree 0 18 20 / 49 = 0.40816 0.02645 ## TweakPsiSegment 0 53 44 / 91 = 0.48352 0.10038 ## TweakPsiPhiSubtree 6 16 9 / 24 = 0.37500 0.01455 ## TweakPsiPhiSegment 1 7 8 / 21 = 0.38095 0.01108 ## TweakHbondSubtree 1 27 23 / 55 = 0.41818 0.04444 ## TweakHbondSegment 0 11 10 / 24 = 0.41667 0.03073 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 9 / 24 = 0.37500 0.00282 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 5 14 6 / 22 = 0.27273 0.00370 ## BigBackrub 2 0 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 27 17 / 64 = 0.26562 0.02907 ## ClashingRotamer 1 10 4 / 53 = 0.07547 0.01514 ## ClusteredRotamer 5 18 2 / 57 = 0.03509 0.00124 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 31 28 / 241 = 0.11618 0.22982 ## CloseGap 0 36 30 / 208 = 0.14423 0.10167 ## HealGap 0 21 0 / 139 = 0.00000 0.00000 ## MoveGap 0 29 29 / 305 = 0.09508 0.39697 ## ReduceConstraint 0 2 4 / 174 = 0.02299 0.03260 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 57 46 / 651 = 0.07066 0.08543 ## InsertFragment 0 27 27 / 253 = 0.10672 0.19412 ## TwoFragment 0 4 2 / 147 = 0.01361 0.00037 ## CrossOver 4 6 5 / 110 = 0.04545 0.02543 ## DoubleCross 4 1 2 / 33 = 0.06061 0.02610 ## CrossAndInsert 3 3 2 / 172 = 0.01163 0.00184 ## ReduceClash 0 15 12 / 194 = 0.06186 0.08883 # TweakPsiSubtree removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)L523 # TweakPhi removed gap before (T0547)N161 # TweakPhi removed gap before (T0547)C22 # TweakPsiPhi removed gap before (T0547)I129 # TweakPhi removed gap before (T0547)L441 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPsiSubtree removed gap before (T0547)L389 # TweakPhi removed gap before (T0547)E535 # TweakPsiSubtree removed gap before (T0547)Q437 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPsiPhi removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPhi removed gap before (T0547)K367 # TweakPsiSubtree removed gap before (T0547)V502 # generation 36: best score out of 20: T0547.try1 201.96939 cost/residue, 1791 clashes 0.19241 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 14 / 33 = 0.42424 0.01956 ## JiggleSubtree 0 10 8 / 39 = 0.20513 0.03378 ## JiggleSegment 0 19 13 / 61 = 0.21311 0.04507 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 1 1 / 38 = 0.02632 0.00286 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 75 = 0.05333 0.14581 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 5 24 17 / 45 = 0.37778 0.02298 ## TweakPhiSegment 4 25 17 / 42 = 0.40476 0.02397 ## TweakPsiSubtree 0 21 23 / 55 = 0.41818 0.02693 ## TweakPsiSegment 0 54 45 / 93 = 0.48387 0.10518 ## TweakPsiPhiSubtree 6 17 10 / 25 = 0.40000 0.01660 ## TweakPsiPhiSegment 1 7 8 / 22 = 0.36364 0.01057 ## TweakHbondSubtree 1 28 24 / 59 = 0.40678 0.04176 ## TweakHbondSegment 0 13 12 / 26 = 0.46154 0.03284 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 9 / 27 = 0.33333 0.00250 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 5 14 8 / 24 = 0.33333 0.00370 ## BigBackrub 2 0 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 29 18 / 69 = 0.26087 0.02702 ## ClashingRotamer 1 10 4 / 56 = 0.07143 0.01433 ## ClusteredRotamer 5 18 2 / 58 = 0.03448 0.00122 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 31 28 / 249 = 0.11245 0.22243 ## CloseGap 0 36 30 / 210 = 0.14286 0.10070 ## HealGap 0 21 0 / 144 = 0.00000 0.00000 ## MoveGap 0 29 29 / 312 = 0.09295 0.38807 ## ReduceConstraint 0 2 4 / 176 = 0.02273 0.03223 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 58 47 / 665 = 0.07068 0.08368 ## InsertFragment 0 27 27 / 259 = 0.10425 0.18962 ## TwoFragment 0 4 2 / 148 = 0.01351 0.00037 ## CrossOver 4 6 5 / 115 = 0.04348 0.02432 ## DoubleCross 4 1 2 / 33 = 0.06061 0.02610 ## CrossAndInsert 3 3 2 / 173 = 0.01156 0.00183 ## ReduceClash 0 15 12 / 196 = 0.06122 0.08792 # TweakPsiSubtree removed gap before (T0547)S368 # TweakPsiSubtree removed gap before (T0547)V191 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)A147 # TweakPsiSubtree removed gap before (T0547)L378 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPsiSubtree removed gap before (T0547)T256 # TweakPsiSubtree removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)L97 # TweakPhi removed gap before (T0547)V82 # TweakPsiSubtree removed gap before (T0547)K587 # TweakPhi removed gap before (T0547)S539 # generation 37: best score out of 20: T0547.try1 201.67166 cost/residue, 1803 clashes 0.17827 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 14 / 35 = 0.40000 0.01844 ## JiggleSubtree 0 11 8 / 42 = 0.19048 0.03137 ## JiggleSegment 0 21 14 / 65 = 0.21538 0.05402 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 1 1 / 39 = 0.02564 0.00278 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 76 = 0.05263 0.14389 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 5 25 17 / 46 = 0.36957 0.02248 ## TweakPhiSegment 4 25 17 / 44 = 0.38636 0.02288 ## TweakPsiSubtree 0 23 25 / 58 = 0.43103 0.02610 ## TweakPsiSegment 0 56 47 / 100 = 0.47000 0.09847 ## TweakPsiPhiSubtree 6 18 10 / 26 = 0.38462 0.01596 ## TweakPsiPhiSegment 1 7 9 / 23 = 0.39130 0.01042 ## TweakHbondSubtree 1 30 27 / 64 = 0.42188 0.03881 ## TweakHbondSegment 0 13 12 / 29 = 0.41379 0.02945 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 9 / 29 = 0.31034 0.00233 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 5 14 8 / 24 = 0.33333 0.00370 ## BigBackrub 2 0 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 30 19 / 71 = 0.26761 0.02791 ## ClashingRotamer 1 10 4 / 56 = 0.07143 0.01433 ## ClusteredRotamer 5 19 2 / 62 = 0.03226 0.00114 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 31 28 / 252 = 0.11111 0.21979 ## CloseGap 0 37 30 / 215 = 0.13953 0.09836 ## HealGap 0 22 0 / 146 = 0.00000 0.00000 ## MoveGap 0 30 30 / 318 = 0.09434 0.38091 ## ReduceConstraint 0 2 4 / 179 = 0.02235 0.03169 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 24 = 0.00000 0.00000 ## InsertSpecificFragment 0 59 49 / 682 = 0.07185 0.08170 ## InsertFragment 0 27 27 / 268 = 0.10075 0.18326 ## TwoFragment 0 4 2 / 152 = 0.01316 0.00036 ## CrossOver 4 6 5 / 117 = 0.04274 0.02391 ## DoubleCross 4 1 2 / 34 = 0.05882 0.02533 ## CrossAndInsert 3 3 2 / 176 = 0.01136 0.00180 ## ReduceClash 0 16 13 / 198 = 0.06566 0.08794 # TweakPsiPhi removed gap before (T0547)E164 # TweakPhi removed gap before (T0547)S579 # TweakPhi removed gap before (T0547)C483 # TweakPsiPhi removed gap before (T0547)T534 # TweakPsiPhi removed gap before (T0547)K283 # TweakPsiSubtree removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)R39 # TweakPsiSubtree removed gap before (T0547)I34 # TweakPhi removed gap before (T0547)N601 # TweakPsiSubtree removed gap before (T0547)I333 # TweakPsiSubtree removed gap before (T0547)D103 # TweakPsiSubtree removed gap before (T0547)Q448 # generation 38: best score out of 20: T0547.try1 201.45769 cost/residue, 1800 clashes 0.17826 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 14 / 36 = 0.38889 0.01793 ## JiggleSubtree 0 11 8 / 46 = 0.17391 0.02864 ## JiggleSegment 0 22 14 / 69 = 0.20290 0.05089 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 1 1 / 41 = 0.02439 0.00265 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 79 = 0.05063 0.13843 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 27 19 / 48 = 0.39583 0.02191 ## TweakPhiSegment 4 26 17 / 45 = 0.37778 0.02237 ## TweakPsiSubtree 0 24 26 / 61 = 0.42623 0.02832 ## TweakPsiSegment 0 58 48 / 103 = 0.46602 0.09616 ## TweakPsiPhiSubtree 6 18 10 / 26 = 0.38462 0.01596 ## TweakPsiPhiSegment 1 8 10 / 26 = 0.38462 0.00978 ## TweakHbondSubtree 1 31 27 / 66 = 0.40909 0.03763 ## TweakHbondSegment 0 13 13 / 32 = 0.40625 0.02797 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 9 / 30 = 0.30000 0.00225 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 5 15 9 / 26 = 0.34615 0.00425 ## BigBackrub 2 0 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 31 19 / 73 = 0.26027 0.02715 ## ClashingRotamer 1 10 4 / 57 = 0.07018 0.01408 ## ClusteredRotamer 5 19 2 / 64 = 0.03125 0.00110 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 31 28 / 257 = 0.10895 0.21551 ## CloseGap 0 38 31 / 222 = 0.13964 0.09597 ## HealGap 0 22 0 / 152 = 0.00000 0.00000 ## MoveGap 0 30 30 / 324 = 0.09259 0.37386 ## ReduceConstraint 0 2 4 / 182 = 0.02198 0.03117 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 60 50 / 691 = 0.07236 0.08084 ## InsertFragment 0 27 27 / 274 = 0.09854 0.17924 ## TwoFragment 0 4 2 / 155 = 0.01290 0.00035 ## CrossOver 4 6 5 / 124 = 0.04032 0.02256 ## DoubleCross 4 1 2 / 36 = 0.05556 0.02392 ## CrossAndInsert 3 4 3 / 177 = 0.01695 0.00418 ## ReduceClash 0 16 13 / 201 = 0.06468 0.08662 # TweakPhi removed gap before (T0547)K506 # TweakPsiSubtree removed gap before (T0547)N289 # TweakPhi removed gap before (T0547)W454 # TweakPsiSubtree removed gap before (T0547)D422 # TweakPhi removed gap before (T0547)G262 # TweakPsiSubtree removed gap before (T0547)D501 # TweakPsiPhi removed gap before (T0547)A476 # TweakPsiSubtree removed gap before (T0547)P84 # TweakPhi removed gap before (T0547)F301 # TweakPhi removed gap before (T0547)R323 # TweakPsiSubtree removed gap before (T0547)G159 # TweakPsiSubtree removed gap before (T0547)I62 # TweakPsiSubtree removed gap before (T0547)H568 # TweakPsiPhi removed gap before (T0547)H233 # TweakPhi removed gap before (T0547)K415 # TweakPhi removed gap before (T0547)S280 # TweakPsiPhi removed gap before (T0547)L182 # generation 39: best score out of 20: T0547.try1 201.10732 cost/residue, 1764 clashes 0.17410 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 14 / 36 = 0.38889 0.01793 ## JiggleSubtree 0 11 8 / 47 = 0.17021 0.02803 ## JiggleSegment 0 23 14 / 75 = 0.18667 0.04682 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 1 1 / 42 = 0.02381 0.00259 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 80 = 0.05000 0.13670 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 28 20 / 51 = 0.39216 0.02140 ## TweakPhiSegment 4 28 19 / 49 = 0.38776 0.02312 ## TweakPsiSubtree 0 24 26 / 62 = 0.41935 0.02787 ## TweakPsiSegment 0 61 52 / 109 = 0.47706 0.09811 ## TweakPsiPhiSubtree 6 18 10 / 28 = 0.35714 0.01482 ## TweakPsiPhiSegment 1 8 10 / 27 = 0.37037 0.00941 ## TweakHbondSubtree 1 32 27 / 69 = 0.39130 0.03600 ## TweakHbondSegment 1 17 16 / 38 = 0.42105 0.03698 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 11 10 / 32 = 0.31250 0.00237 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 5 15 10 / 28 = 0.35714 0.00511 ## BigBackrub 2 0 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 31 19 / 73 = 0.26027 0.02715 ## ClashingRotamer 1 10 4 / 57 = 0.07018 0.01408 ## ClusteredRotamer 5 19 2 / 65 = 0.03077 0.00109 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 32 29 / 262 = 0.11069 0.21273 ## CloseGap 0 39 32 / 228 = 0.14035 0.09397 ## HealGap 0 22 0 / 154 = 0.00000 0.00000 ## MoveGap 0 30 30 / 330 = 0.09091 0.36706 ## ReduceConstraint 0 2 4 / 183 = 0.02186 0.03100 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 60 50 / 702 = 0.07123 0.07957 ## InsertFragment 0 27 27 / 283 = 0.09541 0.17354 ## TwoFragment 0 4 2 / 158 = 0.01266 0.00034 ## CrossOver 4 6 5 / 128 = 0.03906 0.02185 ## DoubleCross 4 1 2 / 37 = 0.05405 0.02328 ## CrossAndInsert 3 4 3 / 179 = 0.01676 0.00413 ## ReduceClash 0 17 13 / 209 = 0.06220 0.08331 # TweakPsiSubtree removed gap before (T0547)D602 # TweakPsiSubtree removed gap before (T0547)H242 # TweakPhi removed gap before (T0547)V442 # TweakPhi removed gap before (T0547)A268 # TweakPhi removed gap before (T0547)A214 # TweakPsiSubtree removed gap before (T0547)D33 # TweakPhi removed gap before (T0547)F73 # TweakPsiSubtree removed gap before (T0547)L224 # TweakPhi removed gap before (T0547)D564 # TweakPsiSubtree removed gap before (T0547)E361 # generation 40: best score out of 20: T0547.try1 200.95862 cost/residue, 1758 clashes 0.17302 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 16 / 38 = 0.42105 0.01789 ## JiggleSubtree 0 11 8 / 47 = 0.17021 0.02803 ## JiggleSegment 0 24 15 / 79 = 0.18987 0.04474 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 1 1 / 44 = 0.02273 0.00247 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 80 = 0.05000 0.13670 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 29 21 / 53 = 0.39623 0.02063 ## TweakPhiSegment 4 29 20 / 52 = 0.38462 0.02455 ## TweakPsiSubtree 0 25 27 / 63 = 0.42857 0.02749 ## TweakPsiSegment 0 62 53 / 114 = 0.46491 0.09382 ## TweakPsiPhiSubtree 6 18 10 / 28 = 0.35714 0.01482 ## TweakPsiPhiSegment 1 8 10 / 27 = 0.37037 0.00941 ## TweakHbondSubtree 1 34 27 / 72 = 0.37500 0.03450 ## TweakHbondSegment 1 19 16 / 41 = 0.39024 0.03428 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 11 10 / 33 = 0.30303 0.00229 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 5 15 10 / 30 = 0.33333 0.00477 ## BigBackrub 2 0 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 33 21 / 77 = 0.27273 0.02637 ## ClashingRotamer 1 10 4 / 59 = 0.06780 0.01360 ## ClusteredRotamer 5 19 2 / 67 = 0.02985 0.00105 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 33 30 / 274 = 0.10949 0.20396 ## CloseGap 0 40 33 / 238 = 0.13866 0.09092 ## HealGap 0 22 0 / 154 = 0.00000 0.00000 ## MoveGap 0 30 30 / 339 = 0.08850 0.35732 ## ReduceConstraint 0 2 4 / 187 = 0.02139 0.03034 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 60 50 / 715 = 0.06993 0.07812 ## InsertFragment 0 29 28 / 290 = 0.09655 0.17025 ## TwoFragment 0 4 2 / 159 = 0.01258 0.00034 ## CrossOver 4 6 5 / 129 = 0.03876 0.02168 ## DoubleCross 4 1 2 / 37 = 0.05405 0.02328 ## CrossAndInsert 3 4 3 / 184 = 0.01630 0.00402 ## ReduceClash 0 17 13 / 211 = 0.06161 0.08252 # Closed gap before (T0547)I200 # TweakPhi removed gap before (T0547)E343 # TweakPsiSubtree removed gap before (T0547)M261 # TweakPsiSubtree removed gap before (T0547)I350 # TweakPsiSubtree removed gap before (T0547)E164 # TweakPsiSubtree removed gap before (T0547)F324 # TweakPsiSubtree removed gap before (T0547)K267 # TweakPhi removed gap before (T0547)E138 # TweakPsiPhi removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)P371 # TweakPsiSubtree removed gap before (T0547)D316 # TweakPsiSubtree removed gap before (T0547)D469 # TweakPsiSubtree removed gap before (T0547)Y344 # TweakPsiPhi removed gap before (T0547)T409 # TweakPsiSubtree removed gap before (T0547)N18 # TweakPhi removed gap before (T0547)V35 # TweakPsiPhi removed gap before (T0547)K582 # generation 41: best score out of 20: T0547.try1 200.26845 cost/residue, 1712 clashes 0.17577 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 19 / 42 = 0.45238 0.01864 ## JiggleSubtree 0 12 9 / 49 = 0.18367 0.03046 ## JiggleSegment 0 25 16 / 82 = 0.19512 0.04348 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 1 1 / 45 = 0.02222 0.00241 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 83 = 0.04819 0.13176 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 29 21 / 54 = 0.38889 0.02025 ## TweakPhiSegment 4 31 20 / 54 = 0.37037 0.02364 ## TweakPsiSubtree 0 25 27 / 64 = 0.42188 0.02706 ## TweakPsiSegment 0 64 56 / 123 = 0.45528 0.08769 ## TweakPsiPhiSubtree 6 18 10 / 30 = 0.33333 0.01383 ## TweakPsiPhiSegment 2 8 10 / 28 = 0.35714 0.00908 ## TweakHbondSubtree 1 35 27 / 75 = 0.36000 0.03312 ## TweakHbondSegment 1 21 20 / 52 = 0.38462 0.02886 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 10 / 35 = 0.28571 0.00216 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 5 16 11 / 31 = 0.35484 0.00482 ## BigBackrub 2 0 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 34 21 / 78 = 0.26923 0.02604 ## ClashingRotamer 1 10 4 / 64 = 0.06250 0.01254 ## ClusteredRotamer 5 19 2 / 67 = 0.02985 0.00105 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 34 31 / 281 = 0.11032 0.20134 ## CloseGap 0 40 33 / 243 = 0.13580 0.08904 ## HealGap 0 22 0 / 155 = 0.00000 0.00000 ## MoveGap 0 30 30 / 343 = 0.08746 0.35315 ## ReduceConstraint 0 2 4 / 188 = 0.02128 0.03017 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 60 50 / 727 = 0.06878 0.07683 ## InsertFragment 0 29 28 / 294 = 0.09524 0.16794 ## TwoFragment 0 4 2 / 162 = 0.01235 0.00033 ## CrossOver 4 6 5 / 133 = 0.03759 0.02103 ## DoubleCross 4 1 2 / 38 = 0.05263 0.02267 ## CrossAndInsert 3 4 3 / 185 = 0.01622 0.00400 ## ReduceClash 0 17 13 / 216 = 0.06019 0.08061 # TweakPsiSubtree removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)K607 # TweakPhi removed gap before (T0547)L456 # TweakPsiSubtree removed gap before (T0547)V436 # TweakPsiPhi removed gap before (T0547)I556 # TweakPsiSubtree removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)V98 # TweakPsiSubtree removed gap before (T0547)R323 # TweakPsiPhi removed gap before (T0547)Q237 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)Q58 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPsiPhi removed gap before (T0547)L116 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)S287 # generation 42: best score out of 20: T0547.try1 199.77409 cost/residue, 1813 clashes 0.19899 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 19 / 44 = 0.43182 0.01780 ## JiggleSubtree 0 13 10 / 52 = 0.19231 0.02942 ## JiggleSegment 0 26 16 / 86 = 0.18605 0.04146 ## OptSubtree 0 1 1 / 28 = 0.03571 0.02365 ## OptSegment 0 1 1 / 46 = 0.02174 0.00236 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 85 = 0.04706 0.12866 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 29 22 / 56 = 0.39286 0.02135 ## TweakPhiSegment 4 31 20 / 55 = 0.36364 0.02321 ## TweakPsiSubtree 0 26 28 / 65 = 0.43077 0.02665 ## TweakPsiSegment 0 69 60 / 131 = 0.45802 0.08315 ## TweakPsiPhiSubtree 6 18 10 / 31 = 0.32258 0.01338 ## TweakPsiPhiSegment 2 8 10 / 30 = 0.33333 0.00847 ## TweakHbondSubtree 1 36 28 / 78 = 0.35897 0.03190 ## TweakHbondSegment 1 22 22 / 55 = 0.40000 0.02918 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 10 / 35 = 0.28571 0.00216 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 5 17 11 / 32 = 0.34375 0.00467 ## BigBackrub 2 0 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 34 21 / 81 = 0.25926 0.02507 ## ClashingRotamer 1 10 4 / 65 = 0.06154 0.01235 ## ClusteredRotamer 5 19 2 / 67 = 0.02985 0.00105 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 34 31 / 286 = 0.10839 0.19782 ## CloseGap 0 40 33 / 249 = 0.13253 0.08690 ## HealGap 0 22 0 / 158 = 0.00000 0.00000 ## MoveGap 0 32 30 / 352 = 0.08523 0.34412 ## ReduceConstraint 0 2 4 / 194 = 0.02062 0.02924 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 61 51 / 742 = 0.06873 0.07692 ## InsertFragment 0 29 28 / 296 = 0.09459 0.16680 ## TwoFragment 0 4 2 / 165 = 0.01212 0.00033 ## CrossOver 4 6 5 / 137 = 0.03650 0.02042 ## DoubleCross 4 1 2 / 39 = 0.05128 0.02208 ## CrossAndInsert 3 4 3 / 186 = 0.01613 0.00398 ## ReduceClash 0 17 13 / 221 = 0.05882 0.07878 # TweakPhi removed gap before (T0547)I145 # TweakPsiSubtree removed gap before (T0547)A427 # TweakPhi removed gap before (T0547)L292 # TweakPhi removed gap before (T0547)W9 # TweakPhi removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPsiSubtree removed gap before (T0547)S475 # TweakPhi removed gap before (T0547)V82 # TweakPhi removed gap before (T0547)E308 # TweakPsiSubtree removed gap before (T0547)M525 # generation 43: best score out of 20: T0547.try1 199.77409 cost/residue, 1813 clashes 0.19899 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 19 / 46 = 0.41304 0.01702 ## JiggleSubtree 0 15 11 / 55 = 0.20000 0.03478 ## JiggleSegment 0 26 16 / 89 = 0.17978 0.04006 ## OptSubtree 0 1 1 / 36 = 0.02778 0.01839 ## OptSegment 0 1 1 / 46 = 0.02174 0.00236 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 87 = 0.04598 0.12570 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 30 23 / 59 = 0.38983 0.02045 ## TweakPhiSegment 4 33 22 / 59 = 0.37288 0.03682 ## TweakPsiSubtree 0 26 29 / 66 = 0.43939 0.02651 ## TweakPsiSegment 0 71 62 / 134 = 0.46269 0.08173 ## TweakPsiPhiSubtree 6 18 10 / 31 = 0.32258 0.01338 ## TweakPsiPhiSegment 3 8 10 / 30 = 0.33333 0.00847 ## TweakHbondSubtree 1 36 28 / 78 = 0.35897 0.03190 ## TweakHbondSegment 1 23 23 / 57 = 0.40351 0.03058 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 12 10 / 35 = 0.28571 0.00216 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 5 18 11 / 33 = 0.33333 0.00453 ## BigBackrub 2 0 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 36 21 / 83 = 0.25301 0.02447 ## ClashingRotamer 1 10 4 / 65 = 0.06154 0.01235 ## ClusteredRotamer 7 20 2 / 68 = 0.02941 0.00104 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 35 31 / 293 = 0.10580 0.19309 ## CloseGap 0 41 33 / 255 = 0.12941 0.08485 ## HealGap 0 23 0 / 164 = 0.00000 0.00000 ## MoveGap 0 32 31 / 358 = 0.08659 0.33874 ## ReduceConstraint 0 2 4 / 199 = 0.02010 0.02851 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 61 51 / 755 = 0.06755 0.07559 ## InsertFragment 0 29 28 / 297 = 0.09428 0.16624 ## TwoFragment 0 4 2 / 173 = 0.01156 0.00031 ## CrossOver 4 6 5 / 141 = 0.03546 0.01984 ## DoubleCross 4 1 2 / 41 = 0.04878 0.02101 ## CrossAndInsert 3 4 3 / 187 = 0.01604 0.00396 ## ReduceClash 0 17 13 / 225 = 0.05778 0.07738 # TweakPhi removed gap before (T0547)E308 # TweakPhi removed gap before (T0547)A345 # TweakPsiSubtree removed gap before (T0547)R577 # TweakPsiSubtree removed gap before (T0547)K493 # TweakPhi removed gap before (T0547)L139 # TweakPsiSubtree removed gap before (T0547)F514 # TweakPsiSubtree removed gap before (T0547)A296 # TweakPsiPhi removed gap before (T0547)V336 # TweakPhi removed gap before (T0547)G107 # TweakPhi removed gap before (T0547)S490 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPhi removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)G126 # TweakPhi removed gap before (T0547)Y122 # TweakPsiSubtree removed gap before (T0547)D312 # generation 44: best score out of 20: T0547.try1 199.51474 cost/residue, 1805 clashes 0.19905 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 23 20 / 49 = 0.40816 0.01603 ## JiggleSubtree 0 16 12 / 57 = 0.21053 0.03451 ## JiggleSegment 0 28 18 / 94 = 0.19149 0.04078 ## OptSubtree 0 1 1 / 41 = 0.02439 0.01615 ## OptSegment 0 1 1 / 46 = 0.02174 0.00236 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 88 = 0.04545 0.12427 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 30 23 / 60 = 0.38333 0.02011 ## TweakPhiSegment 4 35 27 / 66 = 0.40909 0.04045 ## TweakPsiSubtree 0 26 30 / 68 = 0.44118 0.02581 ## TweakPsiSegment 0 72 64 / 138 = 0.46377 0.08194 ## TweakPsiPhiSubtree 6 19 11 / 32 = 0.34375 0.01298 ## TweakPsiPhiSegment 3 8 10 / 30 = 0.33333 0.00847 ## TweakHbondSubtree 1 38 30 / 81 = 0.37037 0.03165 ## TweakHbondSegment 1 23 23 / 59 = 0.38983 0.02954 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 12 10 / 36 = 0.27778 0.00210 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 5 21 11 / 36 = 0.30556 0.00415 ## BigBackrub 2 0 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 38 22 / 86 = 0.25581 0.02452 ## ClashingRotamer 1 10 4 / 67 = 0.05970 0.01198 ## ClusteredRotamer 7 20 2 / 68 = 0.02941 0.00104 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 35 31 / 302 = 0.10265 0.18734 ## CloseGap 0 41 34 / 260 = 0.13077 0.08325 ## HealGap 0 23 0 / 165 = 0.00000 0.00000 ## MoveGap 0 32 31 / 364 = 0.08516 0.33316 ## ReduceConstraint 0 2 5 / 201 = 0.02488 0.02867 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 62 52 / 769 = 0.06762 0.07453 ## InsertFragment 0 29 28 / 300 = 0.09333 0.16458 ## TwoFragment 0 4 2 / 177 = 0.01130 0.00031 ## CrossOver 4 6 5 / 145 = 0.03448 0.01929 ## DoubleCross 4 1 2 / 41 = 0.04878 0.02101 ## CrossAndInsert 3 4 3 / 190 = 0.01579 0.00389 ## ReduceClash 0 17 13 / 229 = 0.05677 0.07603 # TweakPsiSubtree removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)N404 # TweakPhi removed gap before (T0547)G78 # TweakPhi removed gap before (T0547)F14 # TweakPhi removed gap before (T0547)F73 # TweakPhi removed gap before (T0547)D566 # TweakPsiSubtree removed gap before (T0547)A251 # TweakPsiPhi removed gap before (T0547)S280 # TweakPhi removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)F232 # TweakPhi removed gap before (T0547)F460 # TweakPsiPhi removed gap before (T0547)L38 # TweakPhi removed gap before (T0547)I382 # TweakPhi removed gap before (T0547)N585 # TweakPsiSubtree removed gap before (T0547)F301 # generation 45: best score out of 20: T0547.try1 199.42682 cost/residue, 1834 clashes 0.20146 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 20 / 52 = 0.38462 0.01511 ## JiggleSubtree 0 18 14 / 62 = 0.22581 0.03621 ## JiggleSegment 0 30 20 / 99 = 0.20202 0.04201 ## OptSubtree 0 1 1 / 44 = 0.02273 0.01505 ## OptSegment 0 1 1 / 49 = 0.02041 0.00222 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 89 = 0.04494 0.12287 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 30 24 / 63 = 0.38095 0.02093 ## TweakPhiSegment 7 39 30 / 72 = 0.41667 0.03743 ## TweakPsiSubtree 0 27 31 / 70 = 0.44286 0.02577 ## TweakPsiSegment 0 73 64 / 140 = 0.45714 0.08077 ## TweakPsiPhiSubtree 6 20 11 / 34 = 0.32353 0.01222 ## TweakPsiPhiSegment 3 8 10 / 30 = 0.33333 0.00847 ## TweakHbondSubtree 1 39 32 / 86 = 0.37209 0.03281 ## TweakHbondSegment 1 24 25 / 63 = 0.39683 0.02906 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 12 10 / 36 = 0.27778 0.00210 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 5 21 12 / 38 = 0.31579 0.00401 ## BigBackrub 2 0 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 38 22 / 87 = 0.25287 0.02424 ## ClashingRotamer 1 10 4 / 68 = 0.05882 0.01180 ## ClusteredRotamer 7 20 2 / 68 = 0.02941 0.00104 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 35 31 / 309 = 0.10032 0.18309 ## CloseGap 0 43 37 / 267 = 0.13858 0.08266 ## HealGap 0 23 0 / 166 = 0.00000 0.00000 ## MoveGap 0 32 31 / 370 = 0.08378 0.32776 ## ReduceConstraint 0 2 5 / 207 = 0.02415 0.02783 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 63 53 / 775 = 0.06839 0.07428 ## InsertFragment 0 29 28 / 304 = 0.09211 0.16241 ## TwoFragment 0 4 2 / 179 = 0.01117 0.00030 ## CrossOver 4 6 5 / 147 = 0.03401 0.01903 ## DoubleCross 4 1 2 / 43 = 0.04651 0.02003 ## CrossAndInsert 3 4 3 / 195 = 0.01538 0.00379 ## ReduceClash 0 17 13 / 233 = 0.05579 0.07473 # TweakPhi removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPhi removed gap before (T0547)E172 # TweakPsiSubtree removed gap before (T0547)S485 # TweakPhi removed gap before (T0547)E505 # TweakPsiSubtree removed gap before (T0547)N61 # TweakPsiSubtree removed gap before (T0547)E435 # TweakPhi removed gap before (T0547)R70 # TweakPsiPhi removed gap before (T0547)Y122 # TweakPhi removed gap before (T0547)G273 # TweakPsiSubtree removed gap before (T0547)L206 # TweakPhi removed gap before (T0547)E138 # TweakPsiSubtree removed gap before (T0547)P335 # TweakPsiSubtree removed gap before (T0547)N425 # TweakPhi removed gap before (T0547)G92 # TweakPhi removed gap before (T0547)K36 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPhi removed gap before (T0547)E542 # TweakPsiSubtree removed gap before (T0547)M463 # TweakPsiSubtree removed gap before (T0547)S539 # TweakPhi removed gap before (T0547)E470 # TweakPsiSubtree removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)P451 # TweakPhi removed gap before (T0547)I302 # generation 46: best score out of 20: T0547.try1 198.96390 cost/residue, 1749 clashes 0.19814 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 20 / 53 = 0.37736 0.01482 ## JiggleSubtree 0 18 14 / 67 = 0.20896 0.03351 ## JiggleSegment 0 31 21 / 102 = 0.20588 0.04091 ## OptSubtree 0 1 1 / 48 = 0.02083 0.01379 ## OptSegment 0 1 1 / 49 = 0.02041 0.00222 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 89 = 0.04494 0.12287 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 30 24 / 66 = 0.36364 0.01998 ## TweakPhiSegment 8 45 33 / 80 = 0.41250 0.03478 ## TweakPsiSubtree 0 29 33 / 72 = 0.45833 0.02875 ## TweakPsiSegment 0 76 67 / 149 = 0.44966 0.08034 ## TweakPsiPhiSubtree 6 21 12 / 35 = 0.34286 0.01323 ## TweakPsiPhiSegment 3 8 10 / 31 = 0.32258 0.00820 ## TweakHbondSubtree 1 39 32 / 86 = 0.37209 0.03281 ## TweakHbondSegment 1 25 26 / 67 = 0.38806 0.03120 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 12 10 / 37 = 0.27027 0.00205 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 6 21 12 / 38 = 0.31579 0.00401 ## BigBackrub 2 0 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 39 23 / 89 = 0.25843 0.02427 ## ClashingRotamer 1 10 4 / 70 = 0.05714 0.01147 ## ClusteredRotamer 7 20 2 / 71 = 0.02817 0.00099 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 35 31 / 312 = 0.09936 0.18133 ## CloseGap 0 43 37 / 274 = 0.13504 0.08055 ## HealGap 0 23 0 / 168 = 0.00000 0.00000 ## MoveGap 0 32 31 / 374 = 0.08289 0.32425 ## ReduceConstraint 0 2 5 / 211 = 0.02370 0.02731 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 29 = 0.00000 0.00000 ## InsertSpecificFragment 0 63 53 / 784 = 0.06760 0.07343 ## InsertFragment 0 29 28 / 310 = 0.09032 0.15927 ## TwoFragment 0 4 2 / 180 = 0.01111 0.00030 ## CrossOver 4 6 5 / 149 = 0.03356 0.01877 ## DoubleCross 4 1 2 / 44 = 0.04545 0.01957 ## CrossAndInsert 3 4 3 / 201 = 0.01493 0.00368 ## ReduceClash 0 17 13 / 237 = 0.05485 0.07347 # TweakPhi removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)I16 # TweakPsiPhi removed gap before (T0547)E505 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPsiSubtree removed gap before (T0547)H591 # TweakPhi removed gap before (T0547)K493 # TweakPsiSubtree removed gap before (T0547)G487 # TweakPsiSubtree removed gap before (T0547)A307 # TweakPhi removed gap before (T0547)E285 # TweakPhi removed gap before (T0547)N161 # TweakPhi removed gap before (T0547)D380 # TweakPsiSubtree removed gap before (T0547)Y25 # TweakPsiSubtree removed gap before (T0547)N249 # generation 47: best score out of 20: T0547.try1 197.89513 cost/residue, 1754 clashes 0.19686 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 21 / 57 = 0.36842 0.01413 ## JiggleSubtree 0 19 14 / 72 = 0.19444 0.03118 ## JiggleSegment 0 33 22 / 106 = 0.20755 0.04012 ## OptSubtree 0 1 1 / 48 = 0.02083 0.01379 ## OptSegment 0 1 1 / 50 = 0.02000 0.00217 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 91 = 0.04396 0.12017 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 30 24 / 66 = 0.36364 0.01998 ## TweakPhiSegment 8 48 34 / 86 = 0.39535 0.03284 ## TweakPsiSubtree 0 30 34 / 77 = 0.44156 0.02724 ## TweakPsiSegment 0 77 67 / 152 = 0.44079 0.07875 ## TweakPsiPhiSubtree 9 21 12 / 37 = 0.32432 0.01251 ## TweakPsiPhiSegment 3 8 10 / 31 = 0.32258 0.00820 ## TweakHbondSubtree 1 40 34 / 90 = 0.37778 0.04429 ## TweakHbondSegment 2 29 30 / 74 = 0.40541 0.03531 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 13 11 / 38 = 0.28947 0.00224 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 7 21 12 / 38 = 0.31579 0.00401 ## BigBackrub 2 0 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 39 23 / 90 = 0.25556 0.02400 ## ClashingRotamer 1 10 4 / 70 = 0.05714 0.01147 ## ClusteredRotamer 8 20 2 / 72 = 0.02778 0.00098 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 36 32 / 317 = 0.10095 0.17910 ## CloseGap 0 43 39 / 279 = 0.13978 0.07924 ## HealGap 0 23 0 / 173 = 0.00000 0.00000 ## MoveGap 0 33 31 / 381 = 0.08136 0.31829 ## ReduceConstraint 0 2 5 / 216 = 0.02315 0.02668 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 64 53 / 797 = 0.06650 0.07223 ## InsertFragment 0 29 28 / 314 = 0.08917 0.15724 ## TwoFragment 0 4 2 / 181 = 0.01105 0.00030 ## CrossOver 4 6 5 / 149 = 0.03356 0.01877 ## DoubleCross 4 1 2 / 45 = 0.04444 0.01914 ## CrossAndInsert 3 4 3 / 203 = 0.01478 0.00365 ## ReduceClash 0 17 13 / 241 = 0.05394 0.07225 # TweakPsiSubtree removed gap before (T0547)N425 # TweakPsiPhi removed gap before (T0547)V436 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F73 # TweakPsiSubtree removed gap before (T0547)E240 # TweakPsiPhi removed gap before (T0547)Y366 # TweakPhi removed gap before (T0547)E285 # TweakPsiSubtree removed gap before (T0547)V98 # TweakPsiSubtree removed gap before (T0547)Y396 # TweakPsiSubtree removed gap before (T0547)D503 # TweakPhi removed gap before (T0547)S341 # TweakPsiSubtree removed gap before (T0547)K357 # TweakPsiPhi removed gap before (T0547)L574 # TweakPsiSubtree removed gap before (T0547)A214 # TweakPhi removed gap before (T0547)D103 # TweakPhi removed gap before (T0547)L418 # TweakPsiSubtree removed gap before (T0547)Q554 # TweakPsiSubtree removed gap before (T0547)F599 # TweakPhi removed gap before (T0547)N216 # TweakPhi removed gap before (T0547)V21 # generation 48: best score out of 20: T0547.try1 197.39140 cost/residue, 1744 clashes 0.19674 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 21 / 59 = 0.35593 0.01366 ## JiggleSubtree 0 19 14 / 73 = 0.19178 0.03076 ## JiggleSegment 0 34 24 / 114 = 0.21053 0.04199 ## OptSubtree 0 1 1 / 53 = 0.01887 0.01249 ## OptSegment 0 2 1 / 51 = 0.01961 0.00213 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 92 = 0.04348 0.11887 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 30 24 / 67 = 0.35821 0.01968 ## TweakPhiSegment 8 52 35 / 91 = 0.38462 0.03241 ## TweakPsiSubtree 0 30 37 / 81 = 0.45679 0.02732 ## TweakPsiSegment 0 78 68 / 158 = 0.43038 0.07578 ## TweakPsiPhiSubtree 9 22 13 / 38 = 0.34211 0.01290 ## TweakPsiPhiSegment 3 8 12 / 33 = 0.36364 0.01022 ## TweakHbondSubtree 1 43 35 / 98 = 0.35714 0.04388 ## TweakHbondSegment 3 33 31 / 79 = 0.39241 0.03347 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 14 12 / 40 = 0.30000 0.00222 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 8 21 12 / 39 = 0.30769 0.00391 ## BigBackrub 2 0 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 40 23 / 91 = 0.25275 0.02373 ## ClashingRotamer 1 10 4 / 72 = 0.05556 0.01115 ## ClusteredRotamer 8 20 2 / 74 = 0.02703 0.00095 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 36 32 / 321 = 0.09969 0.17686 ## CloseGap 0 43 39 / 285 = 0.13684 0.07757 ## HealGap 0 23 0 / 175 = 0.00000 0.00000 ## MoveGap 0 33 31 / 383 = 0.08094 0.31663 ## ReduceConstraint 0 2 6 / 219 = 0.02740 0.02692 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 64 53 / 805 = 0.06584 0.07151 ## InsertFragment 0 29 28 / 319 = 0.08777 0.15478 ## TwoFragment 0 4 2 / 184 = 0.01087 0.00029 ## CrossOver 4 6 5 / 152 = 0.03289 0.01840 ## DoubleCross 4 1 2 / 46 = 0.04348 0.01872 ## CrossAndInsert 4 4 3 / 205 = 0.01463 0.00361 ## ReduceClash 0 17 13 / 244 = 0.05328 0.07136 # TweakPhi removed gap before (T0547)F232 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)P356 # TweakPsiSubtree removed gap before (T0547)H591 # TweakPsiPhi removed gap before (T0547)K95 # TweakPhi removed gap before (T0547)G78 # TweakPhi removed gap before (T0547)A327 # TweakPsiPhi removed gap before (T0547)F498 # TweakPsiPhi removed gap before (T0547)D494 # TweakPsiSubtree removed gap before (T0547)E552 # TweakPhi removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)G181 # TweakPsiSubtree removed gap before (T0547)L303 # TweakPhi removed gap before (T0547)A518 # TweakPhi removed gap before (T0547)I241 # TweakPsiPhi removed gap before (T0547)L303 # Closed gap before (T0547)I200 # TweakPsiPhi removed gap before (T0547)G199 # TweakPsiSubtree removed gap before (T0547)G252 # TweakPhi removed gap before (T0547)D501 # TweakPsiSubtree removed gap before (T0547)E535 # generation 49: best score out of 20: T0547.try1 197.36667 cost/residue, 1750 clashes 0.19674 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 21 / 62 = 0.33871 0.01300 ## JiggleSubtree 0 19 14 / 75 = 0.18667 0.02994 ## JiggleSegment 0 34 25 / 118 = 0.21186 0.04091 ## OptSubtree 0 1 1 / 57 = 0.01754 0.01162 ## OptSegment 0 2 1 / 51 = 0.01961 0.00213 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 92 = 0.04348 0.11887 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 31 24 / 69 = 0.34783 0.01911 ## TweakPhiSegment 8 52 36 / 97 = 0.37113 0.03061 ## TweakPsiSubtree 0 32 39 / 86 = 0.45349 0.02582 ## TweakPsiSegment 0 79 69 / 162 = 0.42593 0.07398 ## TweakPsiPhiSubtree 9 24 14 / 42 = 0.33333 0.01268 ## TweakPsiPhiSegment 3 9 13 / 34 = 0.38235 0.01019 ## TweakHbondSubtree 2 43 35 / 102 = 0.34314 0.04216 ## TweakHbondSegment 3 34 31 / 83 = 0.37349 0.03185 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 14 13 / 41 = 0.31707 0.00219 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 8 24 12 / 42 = 0.28571 0.00363 ## BigBackrub 2 0 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 42 24 / 94 = 0.25532 0.02324 ## ClashingRotamer 1 10 4 / 73 = 0.05479 0.01100 ## ClusteredRotamer 8 20 2 / 75 = 0.02667 0.00094 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 36 32 / 321 = 0.09969 0.17686 ## CloseGap 0 43 39 / 291 = 0.13402 0.07597 ## HealGap 0 23 0 / 179 = 0.00000 0.00000 ## MoveGap 0 33 31 / 384 = 0.08073 0.31581 ## ReduceConstraint 0 2 6 / 222 = 0.02703 0.02656 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 65 54 / 820 = 0.06585 0.07090 ## InsertFragment 0 29 28 / 324 = 0.08642 0.15239 ## TwoFragment 0 4 2 / 186 = 0.01075 0.00029 ## CrossOver 4 6 5 / 153 = 0.03268 0.01828 ## DoubleCross 4 1 2 / 47 = 0.04255 0.01833 ## CrossAndInsert 4 4 3 / 207 = 0.01449 0.00357 ## ReduceClash 0 17 13 / 251 = 0.05179 0.06937 # TweakPsiSubtree removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)H410 # TweakPsiPhi removed gap before (T0547)D401 # TweakPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)N221 # TweakPsiPhi removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)W194 # TweakPsiSubtree removed gap before (T0547)G101 # TweakPsiSubtree removed gap before (T0547)T228 # TweakPsiSubtree removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)I238 # TweakPhi removed gap before (T0547)Y90 # TweakPsiSubtree removed gap before (T0547)C483 # TweakPhi removed gap before (T0547)H591 # TweakPhi removed gap before (T0547)M2 # TweakPhi removed gap before (T0547)D40 # TweakPhi removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)I609 # TweakPsiSubtree removed gap before (T0547)N179 # TweakPsiPhi removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)L362 # TweakPsiPhi removed gap before (T0547)H187 # TweakPhi removed gap before (T0547)I570 # generation 50: best score out of 20: T0547.try1 196.97623 cost/residue, 1752 clashes 0.19674 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 21 / 64 = 0.32812 0.01259 ## JiggleSubtree 0 19 15 / 79 = 0.18987 0.02956 ## JiggleSegment 0 35 26 / 123 = 0.21138 0.03951 ## OptSubtree 0 1 1 / 60 = 0.01667 0.01104 ## OptSegment 0 2 1 / 51 = 0.01961 0.00213 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 93 = 0.04301 0.11759 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 32 25 / 72 = 0.34722 0.01844 ## TweakPhiSegment 8 54 36 / 104 = 0.34615 0.02855 ## TweakPsiSubtree 0 34 41 / 90 = 0.45556 0.02552 ## TweakPsiSegment 0 81 71 / 168 = 0.42262 0.07159 ## TweakPsiPhiSubtree 10 24 14 / 44 = 0.31818 0.01211 ## TweakPsiPhiSegment 3 10 14 / 36 = 0.38889 0.01044 ## TweakHbondSubtree 2 46 36 / 107 = 0.33645 0.04040 ## TweakHbondSegment 3 35 34 / 89 = 0.38202 0.03031 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 13 / 44 = 0.29545 0.00204 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 8 25 12 / 45 = 0.26667 0.00339 ## BigBackrub 2 0 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 42 25 / 96 = 0.26042 0.02414 ## ClashingRotamer 1 10 4 / 74 = 0.05405 0.01085 ## ClusteredRotamer 8 20 2 / 78 = 0.02564 0.00090 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 36 32 / 322 = 0.09938 0.17632 ## CloseGap 0 43 39 / 294 = 0.13265 0.07519 ## HealGap 0 23 0 / 182 = 0.00000 0.00000 ## MoveGap 0 33 31 / 389 = 0.07969 0.31175 ## ReduceConstraint 0 2 6 / 222 = 0.02703 0.02656 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 65 54 / 837 = 0.06452 0.06946 ## InsertFragment 0 29 28 / 327 = 0.08563 0.15099 ## TwoFragment 0 4 2 / 187 = 0.01070 0.00029 ## CrossOver 4 7 6 / 154 = 0.03896 0.02092 ## DoubleCross 4 1 2 / 48 = 0.04167 0.01794 ## CrossAndInsert 4 4 3 / 210 = 0.01429 0.00352 ## ReduceClash 0 17 13 / 251 = 0.05179 0.06937 # TweakPhi removed gap before (T0547)L385 # TweakPsiPhi removed gap before (T0547)N528 # TweakPsiPhi removed gap before (T0547)S341 # TweakPhi removed gap before (T0547)D103 # TweakPsiPhi removed gap before (T0547)K245 # TweakPsiPhi removed gap before (T0547)E470 # TweakPsiPhi removed gap before (T0547)A326 # TweakPsiPhi removed gap before (T0547)G544 # TweakPhi removed gap before (T0547)G192 # TweakPsiSubtree removed gap before (T0547)Q400 # TweakPhi removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)L234 # TweakPhi removed gap before (T0547)D168 # TweakPsiSubtree removed gap before (T0547)P176 # TweakPsiSubtree removed gap before (T0547)N24 # TweakPsiSubtree removed gap before (T0547)I34 # TweakPsiSubtree removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)L337 # TweakPsiPhi removed gap before (T0547)I570 # generation 51: best score out of 20: T0547.try1 196.95798 cost/residue, 1758 clashes 0.19674 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 27 22 / 66 = 0.33333 0.01235 ## JiggleSubtree 0 20 15 / 84 = 0.17857 0.02780 ## JiggleSegment 0 36 27 / 129 = 0.20930 0.03773 ## OptSubtree 0 1 1 / 63 = 0.01587 0.01051 ## OptSegment 0 2 1 / 51 = 0.01961 0.00213 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 94 = 0.04255 0.11634 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 33 27 / 76 = 0.35526 0.01765 ## TweakPhiSegment 8 55 36 / 106 = 0.33962 0.02801 ## TweakPsiSubtree 0 34 41 / 92 = 0.44565 0.02497 ## TweakPsiSegment 0 82 72 / 172 = 0.41860 0.07083 ## TweakPsiPhiSubtree 10 24 15 / 46 = 0.32609 0.01207 ## TweakPsiPhiSegment 4 13 15 / 41 = 0.36585 0.00931 ## TweakHbondSubtree 2 50 38 / 111 = 0.34234 0.03980 ## TweakHbondSegment 4 35 34 / 91 = 0.37363 0.02964 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 13 / 44 = 0.29545 0.00204 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 8 25 12 / 46 = 0.26087 0.00331 ## BigBackrub 2 0 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 42 25 / 97 = 0.25773 0.02389 ## ClashingRotamer 1 11 6 / 76 = 0.07895 0.01114 ## ClusteredRotamer 8 20 2 / 80 = 0.02500 0.00088 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 37 33 / 330 = 0.10000 0.17243 ## CloseGap 0 43 39 / 298 = 0.13087 0.07419 ## HealGap 0 23 0 / 182 = 0.00000 0.00000 ## MoveGap 0 34 31 / 394 = 0.07868 0.30779 ## ReduceConstraint 0 2 6 / 226 = 0.02655 0.02609 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 66 55 / 849 = 0.06478 0.06850 ## InsertFragment 0 29 28 / 330 = 0.08485 0.14962 ## TwoFragment 0 4 2 / 190 = 0.01053 0.00028 ## CrossOver 4 7 6 / 158 = 0.03797 0.02039 ## DoubleCross 4 1 2 / 48 = 0.04167 0.01794 ## CrossAndInsert 6 5 4 / 214 = 0.01869 0.00393 ## ReduceClash 0 17 13 / 253 = 0.05138 0.06882 # TweakPhi removed gap before (T0547)E338 # TweakPhi removed gap before (T0547)T256 # TweakPsiSubtree removed gap before (T0547)K495 # TweakPsiSubtree removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)P426 # TweakPsiSubtree removed gap before (T0547)S403 # TweakPsiSubtree removed gap before (T0547)N161 # TweakPsiPhi removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)G143 # TweakPsiPhi removed gap before (T0547)E162 # TweakPhi removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)F599 # TweakPsiSubtree removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)P91 # TweakPsiSubtree removed gap before (T0547)N355 # TweakPsiPhi removed gap before (T0547)F51 # TweakPsiSubtree removed gap before (T0547)L574 # generation 52: best score out of 20: T0547.try1 196.85161 cost/residue, 1756 clashes 0.19649 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 27 22 / 66 = 0.33333 0.01235 ## JiggleSubtree 0 20 15 / 89 = 0.16854 0.02624 ## JiggleSegment 0 37 28 / 131 = 0.21374 0.03796 ## OptSubtree 0 1 1 / 64 = 0.01562 0.01035 ## OptSegment 0 2 1 / 51 = 0.01961 0.00213 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 95 = 0.04211 0.11511 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 33 27 / 76 = 0.35526 0.01765 ## TweakPhiSegment 8 56 37 / 109 = 0.33945 0.02733 ## TweakPsiSubtree 0 36 43 / 96 = 0.44792 0.02396 ## TweakPsiSegment 0 84 74 / 180 = 0.41111 0.06821 ## TweakPsiPhiSubtree 10 24 15 / 48 = 0.31250 0.01157 ## TweakPsiPhiSegment 4 14 16 / 43 = 0.37209 0.00993 ## TweakHbondSubtree 3 50 38 / 115 = 0.33043 0.03841 ## TweakHbondSegment 4 39 36 / 98 = 0.36735 0.02783 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 13 / 44 = 0.29545 0.00204 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 8 25 14 / 48 = 0.29167 0.00355 ## BigBackrub 2 0 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 44 25 / 102 = 0.24510 0.02272 ## ClashingRotamer 1 11 6 / 76 = 0.07895 0.01114 ## ClusteredRotamer 8 20 2 / 82 = 0.02439 0.00086 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 37 33 / 334 = 0.09880 0.17037 ## CloseGap 0 43 39 / 305 = 0.12787 0.07248 ## HealGap 0 23 0 / 185 = 0.00000 0.00000 ## MoveGap 0 34 31 / 395 = 0.07848 0.30701 ## ReduceConstraint 0 2 6 / 228 = 0.02632 0.02586 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 66 55 / 857 = 0.06418 0.06786 ## InsertFragment 0 29 28 / 337 = 0.08309 0.14651 ## TwoFragment 0 4 2 / 192 = 0.01042 0.00028 ## CrossOver 4 7 6 / 163 = 0.03681 0.01976 ## DoubleCross 4 1 2 / 50 = 0.04000 0.01723 ## CrossAndInsert 6 5 4 / 218 = 0.01835 0.00386 ## ReduceClash 0 17 13 / 259 = 0.05019 0.06723 # TweakPsiSubtree removed gap before (T0547)S202 # TweakPsiSubtree removed gap before (T0547)Y597 # TweakPsiSubtree removed gap before (T0547)S188 # TweakPhi removed gap before (T0547)L385 # TweakPsiSubtree removed gap before (T0547)F514 # TweakPsiSubtree removed gap before (T0547)L385 # TweakPsiSubtree removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)L108 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)V21 # TweakPsiSubtree removed gap before (T0547)L419 # TweakPsiPhi removed gap before (T0547)Q237 # TweakPsiPhi removed gap before (T0547)S403 # TweakPhi removed gap before (T0547)L499 # TweakPsiSubtree removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)D494 # TweakPsiPhi removed gap before (T0547)T207 # TweakPsiPhi removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPsiSubtree removed gap before (T0547)A214 # TweakPhi removed gap before (T0547)E26 # TweakPsiSubtree removed gap before (T0547)L441 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K76 # TweakPsiPhi removed gap before (T0547)S202 # generation 53: best score out of 20: T0547.try1 196.55136 cost/residue, 1712 clashes 0.19677 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 27 22 / 66 = 0.33333 0.01235 ## JiggleSubtree 0 20 15 / 90 = 0.16667 0.02595 ## JiggleSegment 0 40 31 / 135 = 0.22963 0.03751 ## OptSubtree 0 1 1 / 65 = 0.01538 0.01019 ## OptSegment 0 2 1 / 52 = 0.01923 0.00209 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 96 = 0.04167 0.11391 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 35 29 / 79 = 0.36709 0.01854 ## TweakPhiSegment 8 58 39 / 112 = 0.34821 0.03022 ## TweakPsiSubtree 0 38 45 / 103 = 0.43689 0.02296 ## TweakPsiSegment 0 86 76 / 185 = 0.41081 0.06659 ## TweakPsiPhiSubtree 10 25 16 / 50 = 0.32000 0.01150 ## TweakPsiPhiSegment 4 16 16 / 47 = 0.34043 0.00909 ## TweakHbondSubtree 3 50 38 / 122 = 0.31148 0.03621 ## TweakHbondSegment 4 40 37 / 103 = 0.35922 0.02842 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 13 / 44 = 0.29545 0.00204 ## FixOmega 0 0 0 / 5 = 0.00000 0.00000 ## Backrub 9 25 14 / 48 = 0.29167 0.00355 ## BigBackrub 3 0 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 44 25 / 102 = 0.24510 0.02272 ## ClashingRotamer 1 11 6 / 76 = 0.07895 0.01114 ## ClusteredRotamer 8 20 2 / 84 = 0.02381 0.00084 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 38 34 / 341 = 0.09971 0.16771 ## CloseGap 0 43 39 / 308 = 0.12662 0.07178 ## HealGap 0 23 0 / 188 = 0.00000 0.00000 ## MoveGap 0 34 31 / 397 = 0.07809 0.30547 ## ReduceConstraint 0 2 6 / 230 = 0.02609 0.02563 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 66 55 / 871 = 0.06315 0.06677 ## InsertFragment 0 29 28 / 337 = 0.08309 0.14651 ## TwoFragment 0 4 2 / 197 = 0.01015 0.00027 ## CrossOver 4 7 6 / 166 = 0.03614 0.01941 ## DoubleCross 4 2 3 / 52 = 0.05769 0.02372 ## CrossAndInsert 6 5 4 / 224 = 0.01786 0.00375 ## ReduceClash 0 17 13 / 264 = 0.04924 0.06595 # TweakPhi removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)L108 # TweakPsiPhi removed gap before (T0547)K36 # TweakPsiSubtree removed gap before (T0547)L511 # TweakPsiPhi removed gap before (T0547)E386 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPsiSubtree removed gap before (T0547)D40 # TweakPhi removed gap before (T0547)L574 # TweakPsiSubtree removed gap before (T0547)Y509 # TweakPsiPhi removed gap before (T0547)D564 # TweakPsiPhi removed gap before (T0547)T256 # TweakPhi removed gap before (T0547)K582 # TweakPhi removed gap before (T0547)D168 # TweakPsiSubtree removed gap before (T0547)W194 # TweakPhi removed gap before (T0547)F453 # TweakPhi removed gap before (T0547)F340 # TweakPsiPhi removed gap before (T0547)A268 # TweakPsiPhi removed gap before (T0547)N575 # TweakPhi removed gap before (T0547)Y290 # TweakPhi removed gap before (T0547)S197 # generation 54: best score out of 20: T0547.try1 196.26015 cost/residue, 1708 clashes 0.19684 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 27 23 / 68 = 0.33824 0.01200 ## JiggleSubtree 0 20 15 / 90 = 0.16667 0.02595 ## JiggleSegment 0 42 32 / 142 = 0.22535 0.03771 ## OptSubtree 0 1 1 / 65 = 0.01538 0.01019 ## OptSegment 0 2 1 / 52 = 0.01923 0.00209 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 98 = 0.04082 0.11159 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 5 36 30 / 81 = 0.37037 0.01842 ## TweakPhiSegment 8 61 41 / 119 = 0.34454 0.02854 ## TweakPsiSubtree 0 38 46 / 106 = 0.43396 0.02285 ## TweakPsiSegment 0 87 77 / 188 = 0.40957 0.06560 ## TweakPsiPhiSubtree 10 27 17 / 52 = 0.32692 0.01114 ## TweakPsiPhiSegment 5 17 19 / 51 = 0.37255 0.00947 ## TweakHbondSubtree 3 52 41 / 125 = 0.32800 0.03707 ## TweakHbondSegment 4 42 37 / 108 = 0.34259 0.02711 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 14 / 45 = 0.31111 0.00208 ## FixOmega 0 0 0 / 6 = 0.00000 0.00000 ## Backrub 9 25 14 / 48 = 0.29167 0.00355 ## BigBackrub 3 0 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 44 25 / 102 = 0.24510 0.02272 ## ClashingRotamer 1 11 6 / 76 = 0.07895 0.01114 ## ClusteredRotamer 8 21 2 / 85 = 0.02353 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 38 34 / 347 = 0.09798 0.16481 ## CloseGap 0 43 39 / 317 = 0.12303 0.06974 ## HealGap 0 23 0 / 191 = 0.00000 0.00000 ## MoveGap 0 34 31 / 402 = 0.07711 0.30167 ## ReduceConstraint 0 2 7 / 232 = 0.03017 0.02564 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 66 55 / 880 = 0.06250 0.06609 ## InsertFragment 0 29 28 / 341 = 0.08211 0.14479 ## TwoFragment 0 4 2 / 200 = 0.01000 0.00027 ## CrossOver 4 7 7 / 170 = 0.04118 0.01984 ## DoubleCross 4 2 3 / 56 = 0.05357 0.02203 ## CrossAndInsert 6 6 4 / 229 = 0.01747 0.00367 ## ReduceClash 0 17 13 / 266 = 0.04887 0.06546 # TweakPhi removed gap before (T0547)K495 # TweakPhi removed gap before (T0547)A146 # TweakPhi removed gap before (T0547)V87 # TweakPhi removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)A518 # TweakPsiSubtree removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)F514 # TweakPsiSubtree removed gap before (T0547)E595 # TweakPsiPhi removed gap before (T0547)R293 # TweakPhi removed gap before (T0547)N425 # TweakPsiSubtree removed gap before (T0547)E314 # TweakPhi removed gap before (T0547)L465 # TweakPsiSubtree removed gap before (T0547)D486 # TweakPsiSubtree removed gap before (T0547)I55 # TweakPhi removed gap before (T0547)S372 # TweakPsiSubtree removed gap before (T0547)G235 # generation 55: best score out of 20: T0547.try1 196.26015 cost/residue, 1708 clashes 0.19684 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 28 23 / 72 = 0.31944 0.01134 ## JiggleSubtree 0 20 15 / 92 = 0.16304 0.02538 ## JiggleSegment 0 44 33 / 153 = 0.21569 0.03586 ## OptSubtree 0 1 1 / 69 = 0.01449 0.00960 ## OptSegment 0 2 1 / 54 = 0.01852 0.00201 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 98 = 0.04082 0.11159 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 5 38 32 / 85 = 0.37647 0.01763 ## TweakPhiSegment 8 63 42 / 123 = 0.34146 0.02763 ## TweakPsiSubtree 0 38 47 / 110 = 0.42727 0.02214 ## TweakPsiSegment 0 89 78 / 193 = 0.40415 0.06433 ## TweakPsiPhiSubtree 10 27 17 / 52 = 0.32692 0.01114 ## TweakPsiPhiSegment 6 17 19 / 52 = 0.36538 0.00929 ## TweakHbondSubtree 3 53 41 / 129 = 0.31783 0.03592 ## TweakHbondSegment 4 42 38 / 109 = 0.34862 0.02687 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 14 / 45 = 0.31111 0.00208 ## FixOmega 1 0 0 / 6 = 0.00000 0.00000 ## Backrub 9 26 14 / 49 = 0.28571 0.00348 ## BigBackrub 3 0 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 44 25 / 106 = 0.23585 0.02187 ## ClashingRotamer 1 11 6 / 77 = 0.07792 0.01100 ## ClusteredRotamer 8 21 2 / 87 = 0.02299 0.00081 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 38 34 / 348 = 0.09770 0.16433 ## CloseGap 0 44 39 / 323 = 0.12074 0.06844 ## HealGap 0 23 0 / 195 = 0.00000 0.00000 ## MoveGap 0 34 31 / 407 = 0.07617 0.29796 ## ReduceConstraint 0 2 7 / 232 = 0.03017 0.02564 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 66 55 / 887 = 0.06201 0.06557 ## InsertFragment 0 31 29 / 348 = 0.08333 0.14216 ## TwoFragment 0 4 2 / 201 = 0.00995 0.00027 ## CrossOver 4 7 7 / 175 = 0.04000 0.01928 ## DoubleCross 4 2 3 / 59 = 0.05085 0.02091 ## CrossAndInsert 6 6 4 / 232 = 0.01724 0.00362 ## ReduceClash 0 17 13 / 269 = 0.04833 0.06473 # TweakPsiPhi removed gap before (T0547)S477 # TweakPhi removed gap before (T0547)K543 # TweakPhi removed gap before (T0547)A345 # TweakPsiSubtree removed gap before (T0547)K27 # TweakPsiPhi removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)K57 # TweakPhi removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)W479 # TweakPhi removed gap before (T0547)S202 # TweakPsiPhi removed gap before (T0547)E37 # TweakPsiSubtree removed gap before (T0547)G111 # TweakPhi removed gap before (T0547)V504 # TweakPsiSubtree removed gap before (T0547)N443 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)N123 # TweakPhi removed gap before (T0547)D3 # TweakPsiSubtree removed gap before (T0547)K20 # generation 56: best score out of 20: T0547.try1 196.06815 cost/residue, 1670 clashes 0.18586 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 28 23 / 72 = 0.31944 0.01134 ## JiggleSubtree 0 20 15 / 96 = 0.15625 0.02432 ## JiggleSegment 0 45 34 / 155 = 0.21935 0.03572 ## OptSubtree 0 1 1 / 70 = 0.01429 0.00946 ## OptSegment 0 2 1 / 54 = 0.01852 0.00201 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 99 = 0.04040 0.11046 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 5 39 33 / 88 = 0.37500 0.01703 ## TweakPhiSegment 8 69 45 / 129 = 0.34884 0.02821 ## TweakPsiSubtree 0 39 48 / 114 = 0.42105 0.02158 ## TweakPsiSegment 0 91 80 / 197 = 0.40609 0.06480 ## TweakPsiPhiSubtree 11 27 18 / 54 = 0.33333 0.01113 ## TweakPsiPhiSegment 6 17 19 / 54 = 0.35185 0.00895 ## TweakHbondSubtree 3 57 44 / 136 = 0.32353 0.03731 ## TweakHbondSegment 4 42 38 / 111 = 0.34234 0.02638 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 14 / 46 = 0.30435 0.00204 ## FixOmega 1 0 0 / 6 = 0.00000 0.00000 ## Backrub 9 27 14 / 50 = 0.28000 0.00341 ## BigBackrub 3 0 0 / 7 = 0.00000 0.00000 ## OneRotamer 0 44 25 / 108 = 0.23148 0.02146 ## ClashingRotamer 1 11 6 / 79 = 0.07595 0.01072 ## ClusteredRotamer 8 21 2 / 87 = 0.02299 0.00081 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 39 35 / 353 = 0.09915 0.16260 ## CloseGap 0 44 39 / 327 = 0.11927 0.06761 ## HealGap 0 23 0 / 197 = 0.00000 0.00000 ## MoveGap 0 34 31 / 412 = 0.07524 0.29434 ## ReduceConstraint 0 2 7 / 237 = 0.02954 0.02510 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 66 55 / 897 = 0.06132 0.06484 ## InsertFragment 0 31 29 / 353 = 0.08215 0.14015 ## TwoFragment 0 4 2 / 204 = 0.00980 0.00027 ## CrossOver 4 7 8 / 180 = 0.04444 0.01888 ## DoubleCross 4 2 3 / 66 = 0.04545 0.01869 ## CrossAndInsert 6 6 4 / 234 = 0.01709 0.00359 ## ReduceClash 0 17 13 / 270 = 0.04815 0.06449 # TweakPsiSubtree removed gap before (T0547)L446 # TweakPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)F227 # TweakPsiPhi removed gap before (T0547)F510 # TweakPhi removed gap before (T0547)L139 # TweakPsiSubtree removed gap before (T0547)P496 # TweakPhi removed gap before (T0547)K286 # TweakPsiSubtree removed gap before (T0547)R323 # TweakPsiSubtree removed gap before (T0547)L598 # TweakPhi removed gap before (T0547)F301 # TweakPhi removed gap before (T0547)A327 # TweakPsiPhi removed gap before (T0547)E507 # TweakPhi removed gap before (T0547)L223 # generation 57: best score out of 20: T0547.try1 195.79295 cost/residue, 1644 clashes 0.18064 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 29 24 / 74 = 0.32432 0.01116 ## JiggleSubtree 0 20 15 / 97 = 0.15464 0.02407 ## JiggleSegment 0 45 35 / 163 = 0.21472 0.03436 ## OptSubtree 0 1 1 / 72 = 0.01389 0.00920 ## OptSegment 0 2 1 / 54 = 0.01852 0.00201 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 99 = 0.04040 0.11046 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 5 40 33 / 89 = 0.37079 0.01684 ## TweakPhiSegment 9 73 47 / 135 = 0.34815 0.02847 ## TweakPsiSubtree 0 39 48 / 114 = 0.42105 0.02158 ## TweakPsiSegment 0 94 82 / 202 = 0.40594 0.06342 ## TweakPsiPhiSubtree 11 27 18 / 54 = 0.33333 0.01113 ## TweakPsiPhiSegment 6 19 21 / 56 = 0.37500 0.00924 ## TweakHbondSubtree 3 58 46 / 140 = 0.32857 0.03652 ## TweakHbondSegment 4 42 38 / 114 = 0.33333 0.02569 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 14 / 46 = 0.30435 0.00204 ## FixOmega 1 0 0 / 6 = 0.00000 0.00000 ## Backrub 9 29 16 / 53 = 0.30189 0.00396 ## BigBackrub 3 0 0 / 8 = 0.00000 0.00000 ## OneRotamer 0 44 26 / 110 = 0.23636 0.02117 ## ClashingRotamer 1 11 6 / 80 = 0.07500 0.01059 ## ClusteredRotamer 8 21 2 / 88 = 0.02273 0.00080 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 39 35 / 359 = 0.09749 0.15988 ## CloseGap 0 45 40 / 334 = 0.11976 0.06726 ## HealGap 0 23 0 / 200 = 0.00000 0.00000 ## MoveGap 0 34 31 / 416 = 0.07452 0.29151 ## ReduceConstraint 0 2 7 / 239 = 0.02929 0.02489 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 66 56 / 909 = 0.06161 0.06409 ## InsertFragment 0 32 30 / 359 = 0.08357 0.13802 ## TwoFragment 0 4 2 / 204 = 0.00980 0.00027 ## CrossOver 4 7 8 / 185 = 0.04324 0.01837 ## DoubleCross 4 2 3 / 69 = 0.04348 0.01788 ## CrossAndInsert 6 6 4 / 240 = 0.01667 0.00350 ## ReduceClash 0 17 13 / 273 = 0.04762 0.06378 # TweakPsiSubtree removed gap before (T0547)L563 # TweakPsiSubtree removed gap before (T0547)D503 # TweakPhi removed gap before (T0547)F301 # TweakPhi removed gap before (T0547)I6 # TweakPhi removed gap before (T0547)N603 # TweakPsiSubtree removed gap before (T0547)P29 # TweakPhi removed gap before (T0547)Q237 # TweakPsiSubtree removed gap before (T0547)N404 # TweakPsiPhi removed gap before (T0547)K86 # TweakPsiPhi removed gap before (T0547)E158 # TweakPhi removed gap before (T0547)D103 # TweakPhi removed gap before (T0547)N459 # TweakPsiSubtree removed gap before (T0547)T413 # TweakPhi removed gap before (T0547)M571 # TweakPsiSubtree removed gap before (T0547)K20 # TweakPsiPhi removed gap before (T0547)V516 # TweakPsiSubtree removed gap before (T0547)E164 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPhi removed gap before (T0547)G159 # TweakPsiSubtree removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)E435 # TweakPhi removed gap before (T0547)T473 # TweakPhi removed gap before (T0547)N580 # TweakPsiPhi removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)A189 # generation 58: best score out of 20: T0547.try1 195.59114 cost/residue, 1631 clashes 0.18212 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 29 25 / 75 = 0.33333 0.01140 ## JiggleSubtree 0 20 15 / 101 = 0.14851 0.02312 ## JiggleSegment 0 46 36 / 168 = 0.21429 0.03422 ## OptSubtree 0 1 1 / 73 = 0.01370 0.00907 ## OptSegment 0 2 1 / 54 = 0.01852 0.00201 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 99 = 0.04040 0.11046 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 5 42 35 / 95 = 0.36842 0.01649 ## TweakPhiSegment 9 74 49 / 142 = 0.34507 0.02851 ## TweakPsiSubtree 0 39 48 / 117 = 0.41026 0.02103 ## TweakPsiSegment 0 99 85 / 211 = 0.40284 0.06286 ## TweakPsiPhiSubtree 11 27 18 / 55 = 0.32727 0.01093 ## TweakPsiPhiSegment 7 21 23 / 59 = 0.38983 0.00938 ## TweakHbondSubtree 3 59 46 / 145 = 0.31724 0.03526 ## TweakHbondSegment 4 44 39 / 120 = 0.32500 0.02441 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 16 15 / 51 = 0.29412 0.00184 ## FixOmega 1 0 0 / 7 = 0.00000 0.00000 ## Backrub 9 31 17 / 56 = 0.30357 0.00389 ## BigBackrub 3 0 0 / 8 = 0.00000 0.00000 ## OneRotamer 0 44 26 / 111 = 0.23423 0.02098 ## ClashingRotamer 1 11 6 / 81 = 0.07407 0.01045 ## ClusteredRotamer 8 21 2 / 89 = 0.02247 0.00079 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 39 35 / 365 = 0.09589 0.15725 ## CloseGap 0 45 40 / 338 = 0.11834 0.06647 ## HealGap 0 23 0 / 201 = 0.00000 0.00000 ## MoveGap 0 34 31 / 417 = 0.07434 0.29082 ## ReduceConstraint 0 2 7 / 244 = 0.02869 0.02438 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 66 56 / 918 = 0.06100 0.06346 ## InsertFragment 0 33 31 / 362 = 0.08564 0.13735 ## TwoFragment 0 4 2 / 204 = 0.00980 0.00027 ## CrossOver 4 7 8 / 186 = 0.04301 0.01827 ## DoubleCross 4 2 3 / 71 = 0.04225 0.01737 ## CrossAndInsert 6 6 4 / 241 = 0.01660 0.00349 ## ReduceClash 0 17 13 / 275 = 0.04727 0.06331 # TweakPhi removed gap before (T0547)Y4 # TweakPsiPhi removed gap before (T0547)Q58 # TweakPsiPhi removed gap before (T0547)A553 # TweakPhi removed gap before (T0547)K304 # TweakPsiSubtree removed gap before (T0547)A476 # TweakPsiSubtree removed gap before (T0547)K177 # TweakPsiPhi removed gap before (T0547)E505 # TweakPhi removed gap before (T0547)L557 # TweakPsiPhi removed gap before (T0547)I129 # TweakPsiSubtree removed gap before (T0547)S403 # TweakPsiSubtree removed gap before (T0547)P243 # TweakPsiSubtree removed gap before (T0547)H187 # TweakPsiSubtree removed gap before (T0547)A427 # TweakPsiSubtree removed gap before (T0547)Y344 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V325 # TweakPhi removed gap before (T0547)E406 # TweakPsiSubtree removed gap before (T0547)D469 # TweakPsiSubtree removed gap before (T0547)A327 # TweakPsiPhi removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)S372 # TweakPsiSubtree removed gap before (T0547)Q554 # TweakPsiSubtree removed gap before (T0547)F514 # TweakPsiSubtree removed gap before (T0547)L258 # TweakPsiSubtree removed gap before (T0547)H233 # TweakPsiPhi removed gap before (T0547)L456 # TweakPsiPhi removed gap before (T0547)T559 # generation 59: best score out of 20: T0547.try1 195.30467 cost/residue, 1627 clashes 0.18047 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 29 25 / 77 = 0.32468 0.01111 ## JiggleSubtree 0 21 15 / 103 = 0.14563 0.02267 ## JiggleSegment 0 50 39 / 177 = 0.22034 0.03593 ## OptSubtree 0 1 1 / 74 = 0.01351 0.00895 ## OptSegment 0 2 1 / 54 = 0.01852 0.00201 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 100 = 0.04000 0.10936 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 5 42 36 / 97 = 0.37113 0.01621 ## TweakPhiSegment 9 75 49 / 145 = 0.33793 0.02792 ## TweakPsiSubtree 0 40 48 / 120 = 0.40000 0.02050 ## TweakPsiSegment 0 103 90 / 223 = 0.40359 0.06010 ## TweakPsiPhiSubtree 11 30 19 / 60 = 0.31667 0.01064 ## TweakPsiPhiSegment 7 22 24 / 62 = 0.38710 0.00906 ## TweakHbondSubtree 3 60 48 / 151 = 0.31788 0.03429 ## TweakHbondSegment 5 44 39 / 122 = 0.31967 0.02401 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 16 16 / 52 = 0.30769 0.00189 ## FixOmega 1 0 0 / 7 = 0.00000 0.00000 ## Backrub 10 31 18 / 58 = 0.31034 0.00402 ## BigBackrub 3 0 0 / 8 = 0.00000 0.00000 ## OneRotamer 0 44 26 / 113 = 0.23009 0.02061 ## ClashingRotamer 1 11 6 / 81 = 0.07407 0.01045 ## ClusteredRotamer 8 22 2 / 92 = 0.02174 0.00077 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 40 36 / 367 = 0.09809 0.15691 ## CloseGap 0 45 40 / 342 = 0.11696 0.06569 ## HealGap 0 23 0 / 202 = 0.00000 0.00000 ## MoveGap 0 34 31 / 421 = 0.07363 0.28805 ## ReduceConstraint 0 2 7 / 247 = 0.02834 0.02408 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 66 56 / 928 = 0.06034 0.06278 ## InsertFragment 0 33 31 / 365 = 0.08493 0.13622 ## TwoFragment 0 4 2 / 205 = 0.00976 0.00026 ## CrossOver 4 7 8 / 190 = 0.04211 0.01788 ## DoubleCross 4 2 3 / 74 = 0.04054 0.01667 ## CrossAndInsert 6 6 4 / 242 = 0.01653 0.00347 ## ReduceClash 0 17 13 / 280 = 0.04643 0.06218 # TweakPsiSubtree removed gap before (T0547)G78 # TweakPsiSubtree removed gap before (T0547)R474 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPhi removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)H384 # TweakPsiPhi removed gap before (T0547)I556 # TweakPsiSubtree removed gap before (T0547)I166 # TweakPhi removed gap before (T0547)V184 # TweakPsiSubtree removed gap before (T0547)T473 # TweakPsiPhi removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)E148 # TweakPhi removed gap before (T0547)A427 # generation 60: best score out of 20: T0547.try1 195.17804 cost/residue, 1621 clashes 0.18056 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 31 27 / 80 = 0.33750 0.01084 ## JiggleSubtree 0 21 15 / 104 = 0.14423 0.02245 ## JiggleSegment 0 54 41 / 183 = 0.22404 0.03614 ## OptSubtree 0 1 1 / 76 = 0.01316 0.00871 ## OptSegment 0 2 1 / 55 = 0.01818 0.00197 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 4 4 / 101 = 0.03960 0.10827 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 5 43 36 / 98 = 0.36735 0.01604 ## TweakPhiSegment 9 75 50 / 148 = 0.33784 0.02739 ## TweakPsiSubtree 0 41 48 / 123 = 0.39024 0.02000 ## TweakPsiSegment 0 105 92 / 226 = 0.40708 0.06023 ## TweakPsiPhiSubtree 11 30 20 / 61 = 0.32787 0.01080 ## TweakPsiPhiSegment 7 23 25 / 63 = 0.39683 0.00908 ## TweakHbondSubtree 3 62 52 / 157 = 0.33121 0.03448 ## TweakHbondSegment 5 45 39 / 124 = 0.31452 0.02362 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 17 17 / 55 = 0.30909 0.00194 ## FixOmega 1 0 0 / 7 = 0.00000 0.00000 ## Backrub 10 31 18 / 58 = 0.31034 0.00402 ## BigBackrub 3 0 0 / 8 = 0.00000 0.00000 ## OneRotamer 0 46 26 / 116 = 0.22414 0.02007 ## ClashingRotamer 1 11 6 / 83 = 0.07229 0.01020 ## ClusteredRotamer 8 22 2 / 93 = 0.02151 0.00076 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 40 36 / 376 = 0.09574 0.15316 ## CloseGap 0 45 40 / 348 = 0.11494 0.06456 ## HealGap 0 23 0 / 204 = 0.00000 0.00000 ## MoveGap 0 34 31 / 424 = 0.07311 0.28601 ## ReduceConstraint 0 2 7 / 253 = 0.02767 0.02351 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 66 56 / 941 = 0.05951 0.06191 ## InsertFragment 0 33 31 / 371 = 0.08356 0.13401 ## TwoFragment 0 4 2 / 206 = 0.00971 0.00026 ## CrossOver 4 7 8 / 194 = 0.04124 0.01752 ## DoubleCross 4 2 3 / 75 = 0.04000 0.01645 ## CrossAndInsert 6 6 4 / 246 = 0.01626 0.00342 ## ReduceClash 0 17 13 / 282 = 0.04610 0.06174 # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_2072795098.pdb -s /var/tmp/to_scwrl_2072795098.seq -o /var/tmp/from_scwrl_2072795098.pdb > /var/tmp/scwrl_2072795098.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2072795098.pdb # T0547.try1-scwrl 192.95022 cost/residue 1207 clashes 0.18056 breaks # command:# naming current conformation T0547.try1-opt1 # command:# command:# request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1915726871.pdb -s /var/tmp/to_scwrl_1915726871.seq -o /var/tmp/from_scwrl_1915726871.pdb > /var/tmp/scwrl_1915726871.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1915726871.pdb # conformation set from SCWRL output # command:# naming current conformation T0547.try1-opt1-scwrl # command:# command:# CostConform T0547.try1-opt1-scwrl costs 192.95022 T0547.try1-opt1 costs 195.17805 T0547.try1 costs 253.18315 T0547.try1-al8 costs 258.32911 T0547.try1-al7 costs 258.19642 T0547.try1-al6 costs 258.19642 T0547.try1-al5 costs 258.19642 T0547.try1-al4 costs 258.19642 T0547.try1-al3 costs 258.19642 T0547.try1-al2 costs 267.92154 T0547.try1-al1A costs 287.68930 T0547.try1-al1 costs 352.58391 T0547 costs 483.35854 # command:CPU_time= 8087.055 sec, elapsed time= 11040.678 sec. # command:# ScaleCost scaled parameters of cost = # ( 50.000 * align_constraints + 5.000 * ehl2_constraints + 5.000 * align_sheets + 10.000 * pred_nb11_back(9.650) + 10.000 * pred_alpha_back + 5.000 * pred_n_notor_back + 5.000 * pred_bys_back + 3.000 * pred_pb_back + 15.000 * wet6.5(6.500, /log(length)) + 15.000 * dry5(5.000) + 15.000 * dry6.5(6.500) + 20.000 * dry8(8.000) + 15.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 2.000 * n_ca_c + 5.000 * bad_peptide + 5.000 * soft_clashes + 10.000 * backbone_clashes + 50.000 * break + 10.000 * hbond_geom + 10.000 * hbond_geom_backbone + 20.000 * hbond_geom_beta + 40.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 5.000 * maybe_ssbond_geom ) # command:# CostConform T0547.try1-opt1-scwrl costs 201.984 T0547.try1-opt1 costs 206.040 T0547.try1 costs 266.261 T0547.try1-al8 costs 274.407 T0547.try1-al7 costs 274.271 T0547.try1-al6 costs 274.271 T0547.try1-al5 costs 274.271 T0547.try1-al4 costs 274.271 T0547.try1-al3 costs 274.271 T0547.try1-al2 costs 285.597 T0547.try1-al1A costs 310.164 T0547.try1-al1 costs 380.299 T0547 costs 492.448 # command:CPU_time= 8090.896 sec, elapsed time= 11044.635 sec. # command:# Setting Backrub to 2.000 # Setting BigBackrub to 1.000 # Setting FixOmega to 1.000 # Setting OneRotamer to 5.000 # Setting ClashingRotamer to 1.000 # Setting ClusteredRotamer to 1.000 # Setting CrossOver to 1.000 # Setting CrossAndInsert to 1.000 # Setting CloseGap to 1.000 # Setting MoveGap to 1.000 # Setting HealGap to 2.000 # Setting InsertFragment to 1.000 # Setting InsertSpecificFragment to 2.000 # Setting ReduceBreak to 2.000 # Setting ReduceConstraint to 2.000 # Setting ReduceClash to 1.000 # Setting JiggleSegment to 1.000 # Setting JiggleSubtree to 1.000 # Setting OptAllSegments to 1.000 # Setting OptSegment to 1.000 # Setting OptSubtree to 1.000 # Setting ShiftSegment to 1.000 # Setting ShiftSubtree to 1.000 # Setting TweakHbondSegment to 1.000 # Setting TweakHbondSubtree to 1.000 # Setting TweakPhiSegment to 1.000 # Setting TweakPhiSubtree to 1.000 # Setting TweakPsiSegment to 1.000 # Setting TweakPsiSubtree to 1.000 # Setting TweakPsiPhiSegment to 1.000 # Setting TweakPsiPhiSubtree to 1.000 # Initial Method pseudocounts set to # HealPeptide 0.300 # JiggleSubtree 1.000 # JiggleSegment 1.000 # OptSubtree 1.000 # OptSegment 1.000 # OptAllSegments 1.000 # ShiftSubtree 1.000 # ShiftSegment 1.000 # TweakPhiSubtree 1.000 # TweakPhiSegment 1.000 # TweakPsiSubtree 1.000 # TweakPsiSegment 1.000 # TweakPsiPhiSubtree 1.000 # TweakPsiPhiSegment 1.000 # TweakHbondSubtree 1.000 # TweakHbondSegment 1.000 # TweakMultimer 0.300 # TweakPeptide 0.300 # FixOmega 1.000 # Backrub 2.000 # BigBackrub 1.000 # OneRotamer 5.000 # ClashingRotamer 1.000 # ClusteredRotamer 1.000 # PatchSidechain 0.000 # ReduceBreak 2.000 # CloseGap 1.000 # HealGap 2.000 # MoveGap 1.000 # ReduceConstraint 2.000 # ImproveSSBond 0.000 # InsertSSBond 0.000 # InsertAlignment 1.000 # InsertSpecificFragment 2.000 # InsertFragment 1.000 # TwoFragment 5.000 # CrossOver 1.000 # DoubleCross 0.100 # CrossAndInsert 1.000 # ReduceClash 1.000 # command:# OptConform to optimize cost = # ( 50.000 * align_constraints + 5.000 * ehl2_constraints + 5.000 * align_sheets + 10.000 * pred_nb11_back(9.650) + 10.000 * pred_alpha_back + 5.000 * pred_n_notor_back + 5.000 * pred_bys_back + 3.000 * pred_pb_back + 15.000 * wet6.5(6.500, /log(length)) + 15.000 * dry5(5.000) + 15.000 * dry6.5(6.500) + 20.000 * dry8(8.000) + 15.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 2.000 * n_ca_c + 5.000 * bad_peptide + 5.000 * soft_clashes + 10.000 * backbone_clashes + 50.000 * break + 10.000 * hbond_geom + 10.000 * hbond_geom_backbone + 20.000 * hbond_geom_beta + 40.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 5.000 * maybe_ssbond_geom ) # Will do 1 iterations of optimization # iteration 0 # filling pool to have 20 conformations # TweakPhi removed gap before (T0547)F498 # TweakPhi removed gap before (T0547)G64 # best score in initial pool out of 20: T0547.try1-opt1-scwrl at pool[12] 201.984 cost/residue, 1207 clashes 0.181 breaks # optimizing backbone with 20 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # TweakPhi removed gap before (T0547)W454 # TweakPsiSubtree removed gap before (T0547)L258 # TweakPsiSubtree removed gap before (T0547)E138 # TweakPsiPhi removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)E406 # TweakPsiPhi removed gap before (T0547)G524 # TweakPsiPhi removed gap before (T0547)I489 # TweakPsiPhi removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)P128 # TweakPsiPhi removed gap before (T0547)L85 # TweakPhi removed gap before (T0547)N284 # generation 1: best score out of 20: T0547.try1-opt1-scwrl 201.971 cost/residue, 1207 clashes 0.181 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 1 / 3 = 0.33333 0.10970 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 2 = 0.00000 0.00000 ## OptSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 1 / 2 = 0.50000 2.20772 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 0 1 / 3 = 0.33333 0.01265 ## TweakPsiSubtree 0 0 1 / 1 = 1.00000 0.07761 ## TweakPsiSegment 0 1 1 / 2 = 0.50000 0.03149 ## TweakPsiPhiSubtree 0 1 2 / 3 = 0.66667 0.02622 ## TweakPsiPhiSegment 0 1 2 / 3 = 0.66667 0.04109 ## TweakHbondSubtree 0 0 1 / 1 = 1.00000 0.57196 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## FixOmega 0 1 1 / 3 = 0.33333 0.14519 ## Backrub 0 2 1 / 7 = 0.14286 0.00332 ## BigBackrub 0 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 6 0 / 8 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 1 0 2 / 6 = 0.33333 0.05504 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 2 / 4 = 0.50000 0.86969 ## CloseGap 0 0 0 / 2 = 0.00000 0.00000 ## HealGap 0 2 0 / 7 = 0.00000 0.00000 ## MoveGap 0 0 0 / 1 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 4 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 1 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 1 / 3 = 0.33333 3.93813 ## InsertFragment 0 0 0 / 3 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 13 = 0.00000 0.00000 ## CrossOver 0 0 0 / 1 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 0 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 1 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 2 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)Y75 # TweakPhi removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)N443 # TweakPsiPhi removed gap before (T0547)Q58 # TweakPhi removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)A146 # TweakPsiSubtree removed gap before (T0547)P178 # TweakPhi removed gap before (T0547)E320 # TweakPsiSubtree removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)N67 # TweakPsiPhi removed gap before (T0547)H379 # generation 2: best score out of 20: T0547.try1-opt1-scwrl 201.89481 cost/residue, 1207 clashes 0.18045 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 0 1 / 3 = 0.33333 0.10970 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 3 = 0.00000 0.00000 ## OptSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 1 / 9 = 0.11111 0.49060 ## TweakPhiSubtree 0 1 2 / 3 = 0.66667 0.01735 ## TweakPhiSegment 0 0 1 / 4 = 0.25000 0.00949 ## TweakPsiSubtree 0 3 5 / 5 = 1.00000 0.04002 ## TweakPsiSegment 0 1 1 / 4 = 0.25000 0.01575 ## TweakPsiPhiSubtree 0 2 3 / 5 = 0.60000 0.01960 ## TweakPsiPhiSegment 0 3 3 / 5 = 0.60000 0.02755 ## TweakHbondSubtree 0 1 1 / 2 = 0.50000 0.28598 ## TweakHbondSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## FixOmega 0 1 1 / 3 = 0.33333 0.14519 ## Backrub 0 2 1 / 8 = 0.12500 0.00291 ## BigBackrub 0 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 10 1 / 18 = 0.05556 0.00326 ## ClashingRotamer 0 0 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 1 0 2 / 7 = 0.28571 0.04718 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 2 / 12 = 0.16667 0.28990 ## CloseGap 0 1 1 / 6 = 0.16667 0.00245 ## HealGap 0 2 0 / 11 = 0.00000 0.00000 ## MoveGap 0 0 0 / 5 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 5 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 2 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 1 / 8 = 0.12500 1.47680 ## InsertFragment 0 0 0 / 5 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 22 = 0.00000 0.00000 ## CrossOver 0 0 0 / 4 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 0 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 2 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 6 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)I382 # TweakPsiSubtree removed gap before (T0547)I417 # TweakPsiSubtree removed gap before (T0547)L468 # Closed gap before (T0547)L593 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Q58 # TweakPsiSubtree removed gap before (T0547)L499 # TweakPhi removed gap before (T0547)E505 # TweakPsiSubtree removed gap before (T0547)I551 # TweakPsiPhi removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)L234 # TweakPsiSubtree removed gap before (T0547)Y565 # TweakPsiPhi removed gap before (T0547)V87 # TweakPsiSubtree removed gap before (T0547)A263 # generation 3: best score out of 20: T0547.try1-opt1-scwrl 201.59430 cost/residue, 1221 clashes 0.18047 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 1 / 5 = 0.20000 0.06582 ## JiggleSegment 0 1 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 1 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 1 / 12 = 0.08333 0.36795 ## TweakPhiSubtree 0 1 2 / 3 = 0.66667 0.01735 ## TweakPhiSegment 0 1 2 / 6 = 0.33333 0.01003 ## TweakPsiSubtree 0 3 5 / 9 = 0.55556 0.02223 ## TweakPsiSegment 0 3 3 / 7 = 0.42857 0.03802 ## TweakPsiPhiSubtree 1 4 4 / 8 = 0.50000 0.01609 ## TweakPsiPhiSegment 0 3 3 / 5 = 0.60000 0.02755 ## TweakHbondSubtree 0 3 2 / 6 = 0.33333 0.09660 ## TweakHbondSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## FixOmega 0 1 1 / 5 = 0.20000 0.08712 ## Backrub 1 4 1 / 13 = 0.07692 0.00179 ## BigBackrub 0 3 2 / 6 = 0.33333 0.01079 ## OneRotamer 0 13 3 / 28 = 0.10714 0.00701 ## ClashingRotamer 0 0 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 1 0 2 / 12 = 0.16667 0.02752 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 2 / 17 = 0.11765 0.20463 ## CloseGap 0 1 1 / 7 = 0.14286 0.00210 ## HealGap 0 2 0 / 13 = 0.00000 0.00000 ## MoveGap 0 0 0 / 7 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 8 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 4 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 1 / 20 = 0.05000 0.59072 ## InsertFragment 0 0 0 / 7 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 26 = 0.00000 0.00000 ## CrossOver 0 0 0 / 5 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 0 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 4 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 9 = 0.11111 0.04668 # TweakPhi removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)N24 # TweakPsiPhi removed gap before (T0547)F51 # TweakPhi removed gap before (T0547)I167 # TweakPsiPhi removed gap before (T0547)G92 # TweakPhi removed gap before (T0547)N373 # TweakPsiPhi removed gap before (T0547)K495 # TweakPsiSubtree removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)I145 # TweakPsiSubtree removed gap before (T0547)D40 # TweakPsiPhi removed gap before (T0547)L351 # TweakPhi removed gap before (T0547)N61 # TweakPsiPhi removed gap before (T0547)A296 # TweakPsiSubtree removed gap before (T0547)I16 # TweakPsiPhi removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)I302 # TweakPsiPhi removed gap before (T0547)Y75 # TweakPhi removed gap before (T0547)L441 # TweakPsiPhi removed gap before (T0547)E521 # BackrubGuts cancelled---proline or break # generation 4: best score out of 20: T0547.try1-opt1-scwrl 201.59041 cost/residue, 1224 clashes 0.18047 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 1 / 5 = 0.20000 0.06582 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 1 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 1 / 18 = 0.05556 0.24530 ## TweakPhiSubtree 0 1 2 / 6 = 0.33333 0.00868 ## TweakPhiSegment 0 3 3 / 10 = 0.30000 0.00681 ## TweakPsiSubtree 0 3 5 / 10 = 0.50000 0.02001 ## TweakPsiSegment 0 6 5 / 10 = 0.50000 0.04961 ## TweakPsiPhiSubtree 1 5 5 / 11 = 0.45455 0.01195 ## TweakPsiPhiSegment 1 6 4 / 11 = 0.36364 0.01288 ## TweakHbondSubtree 0 3 2 / 7 = 0.28571 0.08280 ## TweakHbondSegment 0 1 0 / 5 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## FixOmega 0 1 1 / 7 = 0.14286 0.06223 ## Backrub 1 4 1 / 14 = 0.07143 0.00166 ## BigBackrub 1 3 2 / 6 = 0.33333 0.01079 ## OneRotamer 0 14 3 / 37 = 0.08108 0.00531 ## ClashingRotamer 0 0 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 1 1 2 / 16 = 0.12500 0.02064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 25 = 0.12000 0.14928 ## CloseGap 0 1 1 / 8 = 0.12500 0.00184 ## HealGap 0 2 0 / 14 = 0.00000 0.00000 ## MoveGap 0 0 0 / 10 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 15 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 4 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 2 / 32 = 0.06250 0.37491 ## InsertFragment 0 0 0 / 7 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 34 = 0.00000 0.00000 ## CrossOver 0 0 0 / 5 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 0 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 6 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 12 = 0.08333 0.03501 # TweakPhi removed gap before (T0547)A416 # TweakPsiPhi removed gap before (T0547)L116 # TweakPhi removed gap before (T0547)D136 # TweakPhi removed gap before (T0547)D434 # TweakPsiPhi removed gap before (T0547)K135 # TweakPsiPhi removed gap before (T0547)K526 # TweakPsiPhi removed gap before (T0547)G101 # TweakPsiSubtree removed gap before (T0547)Q437 # TweakPsiPhi removed gap before (T0547)T154 # TweakPsiSubtree removed gap before (T0547)K543 # TweakPsiPhi removed gap before (T0547)E488 # TweakPsiSubtree removed gap before (T0547)G262 # TweakPsiPhi removed gap before (T0547)N11 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPsiPhi removed gap before (T0547)L224 # TweakPsiSubtree removed gap before (T0547)T409 # TweakPsiSubtree removed gap before (T0547)G92 # TweakPhi removed gap before (T0547)F340 # TweakPhi removed gap before (T0547)G517 # generation 5: best score out of 20: T0547.try1-opt1-scwrl 201.55692 cost/residue, 1224 clashes 0.18045 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 2 2 / 11 = 0.18182 0.03073 ## JiggleSegment 0 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 1 / 21 = 0.04762 0.21026 ## TweakPhiSubtree 1 2 3 / 8 = 0.37500 0.00755 ## TweakPhiSegment 0 4 5 / 13 = 0.38462 0.01085 ## TweakPsiSubtree 0 4 7 / 15 = 0.46667 0.01589 ## TweakPsiSegment 0 7 6 / 12 = 0.50000 0.04388 ## TweakPsiPhiSubtree 1 6 7 / 14 = 0.50000 0.01319 ## TweakPsiPhiSegment 1 9 8 / 16 = 0.50000 0.01670 ## TweakHbondSubtree 0 4 3 / 9 = 0.33333 0.06638 ## TweakHbondSegment 0 2 1 / 9 = 0.11111 0.01058 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## FixOmega 0 1 1 / 8 = 0.12500 0.05445 ## Backrub 1 6 1 / 17 = 0.05882 0.00137 ## BigBackrub 1 3 2 / 7 = 0.28571 0.00924 ## OneRotamer 0 14 3 / 41 = 0.07317 0.00479 ## ClashingRotamer 0 0 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 1 1 2 / 20 = 0.10000 0.01651 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 30 = 0.10000 0.12440 ## CloseGap 0 2 1 / 9 = 0.11111 0.00163 ## HealGap 0 2 0 / 18 = 0.00000 0.00000 ## MoveGap 0 0 0 / 12 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 18 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 5 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 2 / 42 = 0.04762 0.28564 ## InsertFragment 0 0 0 / 9 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 46 = 0.00000 0.00000 ## CrossOver 0 0 0 / 6 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 9 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 13 = 0.07692 0.03232 # TweakPsiPhi removed gap before (T0547)L385 # TweakPsiSubtree removed gap before (T0547)E240 # TweakPsiPhi removed gap before (T0547)L48 # TweakPsiPhi removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)L182 # TweakPsiPhi removed gap before (T0547)G544 # TweakPsiPhi removed gap before (T0547)V522 # TweakPsiPhi removed gap before (T0547)F510 # TweakPsiPhi removed gap before (T0547)G101 # TweakPhi removed gap before (T0547)I538 # TweakPhi removed gap before (T0547)L271 # TweakPsiPhi removed gap before (T0547)S372 # Can't patch backbone between (T0547)E505 and (T0547)K506 because distance= 3.706 not near ideal 3.804 # generation 6: best score out of 20: T0547.try1-opt1-scwrl 200.93420 cost/residue, 1248 clashes 0.17308 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 2 2 / 11 = 0.18182 0.03073 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 8 = 0.00000 0.00000 ## OptSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 1 / 26 = 0.03846 0.16982 ## TweakPhiSubtree 1 2 3 / 8 = 0.37500 0.00755 ## TweakPhiSegment 0 5 5 / 15 = 0.33333 0.00940 ## TweakPsiSubtree 0 4 7 / 16 = 0.43750 0.01489 ## TweakPsiSegment 0 8 7 / 13 = 0.53846 0.04608 ## TweakPsiPhiSubtree 2 9 10 / 18 = 0.55556 0.01313 ## TweakPsiPhiSegment 1 10 8 / 22 = 0.36364 0.01215 ## TweakHbondSubtree 0 6 5 / 15 = 0.33333 0.04302 ## TweakHbondSegment 0 2 1 / 10 = 0.10000 0.00952 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 1 / 2 = 0.50000 0.00140 ## FixOmega 0 1 1 / 11 = 0.09091 0.03960 ## Backrub 1 6 1 / 22 = 0.04545 0.00106 ## BigBackrub 1 4 3 / 9 = 0.33333 0.00877 ## OneRotamer 0 16 5 / 52 = 0.09615 0.00547 ## ClashingRotamer 0 0 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 1 1 2 / 20 = 0.10000 0.01651 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 34 = 0.08824 0.10976 ## CloseGap 0 2 1 / 12 = 0.08333 0.00123 ## HealGap 0 2 0 / 22 = 0.00000 0.00000 ## MoveGap 0 1 1 / 15 = 0.06667 0.01820 ## ReduceConstraint 0 0 0 / 24 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 6 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 3 / 48 = 0.06250 0.25213 ## InsertFragment 0 0 0 / 10 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 51 = 0.00000 0.00000 ## CrossOver 0 2 1 / 10 = 0.10000 0.02275 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 10 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 15 = 0.13333 0.06954 # TweakPsiSubtree removed gap before (T0547)L465 # TweakPhi removed gap before (T0547)M571 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPsiSubtree removed gap before (T0547)G181 # TweakPhi removed gap before (T0547)I551 # TweakPsiSubtree removed gap before (T0547)G455 # TweakPsiSubtree removed gap before (T0547)A119 # TweakPsiPhi removed gap before (T0547)I359 # TweakPhi removed gap before (T0547)Y4 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G45 # TweakPsiPhi removed gap before (T0547)I359 # generation 7: best score out of 20: T0547.try1-opt1-scwrl 200.91974 cost/residue, 1267 clashes 0.17572 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 3 3 / 15 = 0.20000 0.02530 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 8 = 0.00000 0.00000 ## OptSegment 0 1 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 0 0 1 / 32 = 0.03125 0.13798 ## TweakPhiSubtree 2 4 4 / 10 = 0.40000 0.00706 ## TweakPhiSegment 0 5 6 / 17 = 0.35294 0.01108 ## TweakPsiSubtree 0 6 8 / 19 = 0.42105 0.01282 ## TweakPsiSegment 0 9 7 / 16 = 0.43750 0.03744 ## TweakPsiPhiSubtree 2 10 11 / 19 = 0.57895 0.01522 ## TweakPsiPhiSegment 1 10 9 / 23 = 0.39130 0.01367 ## TweakHbondSubtree 0 7 6 / 20 = 0.30000 0.03237 ## TweakHbondSegment 0 4 1 / 13 = 0.07692 0.00732 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 4 = 0.25000 0.00070 ## FixOmega 0 1 1 / 11 = 0.09091 0.03960 ## Backrub 2 6 3 / 24 = 0.12500 0.00260 ## BigBackrub 1 5 3 / 10 = 0.30000 0.00789 ## OneRotamer 0 18 5 / 61 = 0.08197 0.00466 ## ClashingRotamer 0 0 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 1 2 2 / 23 = 0.08696 0.01436 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 36 = 0.08333 0.10366 ## CloseGap 0 3 2 / 13 = 0.15385 0.00224 ## HealGap 0 2 0 / 28 = 0.00000 0.00000 ## MoveGap 0 1 1 / 20 = 0.05000 0.01365 ## ReduceConstraint 0 0 0 / 27 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 3 / 54 = 0.05556 0.22412 ## InsertFragment 0 0 0 / 15 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 54 = 0.00000 0.00000 ## CrossOver 0 2 1 / 13 = 0.07692 0.01750 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 13 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 20 = 0.10000 0.05215 # TweakPsiSubtree removed gap before (T0547)D564 # TweakPsiPhi removed gap before (T0547)A476 # TweakPsiPhi removed gap before (T0547)F301 # TweakPsiSubtree removed gap before (T0547)F93 # TweakPsiPhi removed gap before (T0547)G111 # TweakPsiSubtree removed gap before (T0547)E376 # TweakPsiSubtree removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)D393 # TweakPsiSubtree removed gap before (T0547)G273 # TweakPsiSubtree removed gap before (T0547)L211 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)S372 # generation 8: best score out of 20: T0547.try1-opt1-scwrl 200.76224 cost/residue, 1237 clashes 0.17294 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 3 3 / 16 = 0.18750 0.02372 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 8 = 0.00000 0.00000 ## OptSegment 0 1 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 0 1 / 36 = 0.02778 0.12265 ## TweakPhiSubtree 2 4 4 / 10 = 0.40000 0.00706 ## TweakPhiSegment 0 6 6 / 18 = 0.33333 0.01046 ## TweakPsiSubtree 0 6 8 / 19 = 0.42105 0.01282 ## TweakPsiSegment 0 13 12 / 22 = 0.54545 0.04533 ## TweakPsiPhiSubtree 3 10 11 / 19 = 0.57895 0.01522 ## TweakPsiPhiSegment 1 13 9 / 28 = 0.32143 0.01123 ## TweakHbondSubtree 0 7 6 / 24 = 0.25000 0.02698 ## TweakHbondSegment 0 5 2 / 14 = 0.14286 0.00998 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 5 = 0.20000 0.00056 ## FixOmega 0 1 1 / 16 = 0.06250 0.02722 ## Backrub 3 8 4 / 28 = 0.14286 0.00265 ## BigBackrub 1 7 6 / 15 = 0.40000 0.02290 ## OneRotamer 0 19 6 / 67 = 0.08955 0.00487 ## ClashingRotamer 0 0 0 / 11 = 0.00000 0.00000 ## ClusteredRotamer 2 2 2 / 25 = 0.08000 0.01321 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 48 = 0.06250 0.07775 ## CloseGap 0 4 3 / 15 = 0.20000 0.00291 ## HealGap 0 2 0 / 29 = 0.00000 0.00000 ## MoveGap 0 1 1 / 22 = 0.04545 0.01241 ## ReduceConstraint 0 0 0 / 30 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 3 / 66 = 0.04545 0.18337 ## InsertFragment 0 0 0 / 15 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 64 = 0.00000 0.00000 ## CrossOver 0 2 1 / 17 = 0.05882 0.01338 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 13 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 23 = 0.08696 0.04535 # TweakPsiSubtree removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)G544 # TweakPsiSubtree removed gap before (T0547)L385 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A518 # TweakPhi removed gap before (T0547)K493 # TweakPhi removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)M450 # TweakPhi removed gap before (T0547)D602 # Closed gap before (T0547)L593 # TweakPsiSubtree removed gap before (T0547)E225 # TweakPsiSubtree removed gap before (T0547)P176 # TweakPhi removed gap before (T0547)M571 # TweakPsiPhi removed gap before (T0547)G101 # TweakPsiSubtree removed gap before (T0547)E109 # TweakPsiSubtree removed gap before (T0547)F510 # TweakPsiPhi removed gap before (T0547)V184 # TweakPhi removed gap before (T0547)L303 # TweakPsiPhi removed gap before (T0547)I193 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPhi removed gap before (T0547)I333 # TweakPsiPhi removed gap before (T0547)G78 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPsiSubtree removed gap before (T0547)Y440 # TweakPsiPhi removed gap before (T0547)D33 # TweakPsiSubtree removed gap before (T0547)P243 # TweakPsiSubtree removed gap before (T0547)E546 # generation 9: best score out of 20: T0547.try1-opt1-scwrl 200.55118 cost/residue, 1242 clashes 0.17173 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 3 3 / 17 = 0.17647 0.02233 ## JiggleSegment 0 2 1 / 13 = 0.07692 0.01624 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 1 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 20 = 0.00000 0.00000 ## ShiftSegment 0 0 1 / 43 = 0.02326 0.10268 ## TweakPhiSubtree 2 6 5 / 13 = 0.38462 0.00865 ## TweakPhiSegment 0 10 8 / 23 = 0.34783 0.01436 ## TweakPsiSubtree 0 7 8 / 24 = 0.33333 0.01015 ## TweakPsiSegment 0 16 16 / 29 = 0.55172 0.04425 ## TweakPsiPhiSubtree 3 13 13 / 22 = 0.59091 0.01678 ## TweakPsiPhiSegment 1 14 10 / 31 = 0.32258 0.01091 ## TweakHbondSubtree 0 7 6 / 24 = 0.25000 0.02698 ## TweakHbondSegment 0 5 4 / 16 = 0.25000 0.01240 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 5 = 0.20000 0.00056 ## FixOmega 0 1 1 / 17 = 0.05882 0.02562 ## Backrub 4 9 5 / 30 = 0.16667 0.00273 ## BigBackrub 1 7 6 / 16 = 0.37500 0.02147 ## OneRotamer 0 19 6 / 69 = 0.08696 0.00473 ## ClashingRotamer 0 0 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 3 3 3 / 28 = 0.10714 0.01498 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 57 = 0.05263 0.06547 ## CloseGap 0 4 3 / 16 = 0.18750 0.00273 ## HealGap 0 2 0 / 31 = 0.00000 0.00000 ## MoveGap 0 1 1 / 23 = 0.04348 0.01187 ## ReduceConstraint 0 0 0 / 35 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 4 / 74 = 0.05405 0.16620 ## InsertFragment 0 0 0 / 15 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 68 = 0.00000 0.00000 ## CrossOver 0 2 1 / 18 = 0.05556 0.01264 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 14 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 31 = 0.06452 0.03365 # TweakPsiPhi removed gap before (T0547)G262 # TweakPhi removed gap before (T0547)L358 # TweakPsiSubtree removed gap before (T0547)I129 # TweakPsiSubtree removed gap before (T0547)F93 # TweakPsiPhi removed gap before (T0547)H242 # TweakPsiSubtree removed gap before (T0547)F498 # TweakPsiPhi removed gap before (T0547)A307 # TweakPsiPhi removed gap before (T0547)N152 # TweakPhi removed gap before (T0547)A345 # TweakPsiPhi removed gap before (T0547)K587 # TweakPsiPhi removed gap before (T0547)T473 # TweakPhi removed gap before (T0547)K423 # TweakPsiPhi removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)G252 # generation 10: best score out of 20: T0547.try1-opt1-scwrl 200.55118 cost/residue, 1242 clashes 0.17173 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 1 / 5 = 0.20000 0.00746 ## JiggleSubtree 0 3 3 / 24 = 0.12500 0.01581 ## JiggleSegment 0 2 1 / 18 = 0.05556 0.01173 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 1 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 26 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 1 / 46 = 0.02174 0.09599 ## TweakPhiSubtree 3 7 6 / 14 = 0.42857 0.00831 ## TweakPhiSegment 0 12 8 / 26 = 0.30769 0.01270 ## TweakPsiSubtree 0 7 8 / 25 = 0.32000 0.00974 ## TweakPsiSegment 0 17 17 / 32 = 0.53125 0.04051 ## TweakPsiPhiSubtree 3 16 16 / 25 = 0.64000 0.01899 ## TweakPsiPhiSegment 2 16 13 / 35 = 0.37143 0.01100 ## TweakHbondSubtree 0 7 6 / 24 = 0.25000 0.02698 ## TweakHbondSegment 0 5 6 / 18 = 0.33333 0.01138 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 5 = 0.20000 0.00056 ## FixOmega 0 1 1 / 18 = 0.05556 0.02420 ## Backrub 4 10 5 / 32 = 0.15625 0.00256 ## BigBackrub 1 8 7 / 21 = 0.33333 0.01778 ## OneRotamer 0 21 7 / 78 = 0.08974 0.00476 ## ClashingRotamer 0 0 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 4 3 3 / 32 = 0.09375 0.01311 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 61 = 0.04918 0.06118 ## CloseGap 0 4 3 / 16 = 0.18750 0.00273 ## HealGap 0 2 0 / 33 = 0.00000 0.00000 ## MoveGap 0 1 1 / 25 = 0.04000 0.01092 ## ReduceConstraint 0 0 0 / 37 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 4 / 85 = 0.04706 0.14469 ## InsertFragment 0 0 0 / 15 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 75 = 0.00000 0.00000 ## CrossOver 0 2 1 / 23 = 0.04348 0.00989 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 14 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 37 = 0.05405 0.02819 # TweakPhi removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPsiPhi removed gap before (T0547)S341 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPhi removed gap before (T0547)F514 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Q520 # TweakPsiSubtree removed gap before (T0547)K196 # TweakPsiSubtree removed gap before (T0547)F318 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F340 # TweakPsiPhi removed gap before (T0547)L351 # TweakPsiSubtree removed gap before (T0547)I388 # TweakPhi removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)K68 # generation 11: best score out of 20: T0547.try1-opt1-scwrl 200.32692 cost/residue, 1222 clashes 0.17293 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 2 / 7 = 0.28571 0.00537 ## JiggleSubtree 0 3 3 / 27 = 0.11111 0.01406 ## JiggleSegment 0 2 1 / 19 = 0.05263 0.01111 ## OptSubtree 0 0 0 / 11 = 0.00000 0.00000 ## OptSegment 0 1 0 / 17 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 28 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 1 / 50 = 0.02000 0.08831 ## TweakPhiSubtree 3 8 6 / 17 = 0.35294 0.00684 ## TweakPhiSegment 1 12 8 / 26 = 0.30769 0.01270 ## TweakPsiSubtree 0 7 8 / 26 = 0.30769 0.00937 ## TweakPsiSegment 0 20 18 / 38 = 0.47368 0.03434 ## TweakPsiPhiSubtree 3 19 18 / 29 = 0.62069 0.01721 ## TweakPsiPhiSegment 2 16 13 / 37 = 0.35135 0.01041 ## TweakHbondSubtree 0 7 6 / 26 = 0.23077 0.02490 ## TweakHbondSegment 0 5 6 / 19 = 0.31579 0.01078 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 2 / 6 = 0.33333 0.00065 ## FixOmega 0 1 1 / 23 = 0.04348 0.01894 ## Backrub 4 11 5 / 35 = 0.14286 0.00234 ## BigBackrub 3 11 8 / 27 = 0.29630 0.01517 ## OneRotamer 0 24 9 / 89 = 0.10112 0.00860 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 4 3 3 / 33 = 0.09091 0.01271 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 64 = 0.04688 0.05831 ## CloseGap 0 4 3 / 17 = 0.17647 0.00257 ## HealGap 0 2 0 / 41 = 0.00000 0.00000 ## MoveGap 0 1 1 / 26 = 0.03846 0.01050 ## ReduceConstraint 0 0 0 / 39 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 4 / 95 = 0.04211 0.12946 ## InsertFragment 0 0 0 / 17 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 80 = 0.00000 0.00000 ## CrossOver 1 2 1 / 25 = 0.04000 0.00910 ## DoubleCross 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 14 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 40 = 0.05000 0.02608 # TweakPhi removed gap before (T0547)L258 # TweakPhi removed gap before (T0547)L155 # TweakPhi removed gap before (T0547)N124 # TweakPsiPhi removed gap before (T0547)G487 # TweakPsiPhi removed gap before (T0547)L499 # TweakPsiPhi removed gap before (T0547)K543 # TweakPhi removed gap before (T0547)A307 # TweakPsiSubtree removed gap before (T0547)F144 # TweakPsiSubtree removed gap before (T0547)F227 # TweakPsiSubtree removed gap before (T0547)A405 # TweakPsiSubtree removed gap before (T0547)G143 # TweakPsiSubtree removed gap before (T0547)S202 # TweakPsiSubtree removed gap before (T0547)E213 # TweakPsiSubtree removed gap before (T0547)K28 # TweakPsiSubtree removed gap before (T0547)L358 # TweakPsiSubtree removed gap before (T0547)I573 # TweakPsiPhi removed gap before (T0547)H410 # TweakPsiSubtree removed gap before (T0547)L234 # generation 12: best score out of 20: T0547.try1-opt1-scwrl 199.33966 cost/residue, 1264 clashes 0.16383 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 2 / 8 = 0.25000 0.00470 ## JiggleSubtree 0 4 3 / 29 = 0.10345 0.01309 ## JiggleSegment 0 3 2 / 21 = 0.09524 0.01219 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 1 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 32 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 1 2 / 60 = 0.03333 0.09368 ## TweakPhiSubtree 3 8 6 / 18 = 0.33333 0.00646 ## TweakPhiSegment 1 14 9 / 29 = 0.31034 0.01139 ## TweakPsiSubtree 0 7 9 / 29 = 0.31034 0.00857 ## TweakPsiSegment 0 22 20 / 45 = 0.44444 0.02988 ## TweakPsiPhiSubtree 4 19 18 / 31 = 0.58065 0.01610 ## TweakPsiPhiSegment 2 16 13 / 39 = 0.33333 0.00987 ## TweakHbondSubtree 0 8 7 / 30 = 0.23333 0.02174 ## TweakHbondSegment 0 8 7 / 24 = 0.29167 0.00855 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 2 / 6 = 0.33333 0.00065 ## FixOmega 1 1 1 / 27 = 0.03704 0.01613 ## Backrub 4 12 5 / 37 = 0.13514 0.00222 ## BigBackrub 3 11 8 / 28 = 0.28571 0.01463 ## OneRotamer 0 26 9 / 96 = 0.09375 0.00797 ## ClashingRotamer 0 0 0 / 17 = 0.00000 0.00000 ## ClusteredRotamer 4 3 3 / 36 = 0.08333 0.01165 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 69 = 0.04348 0.05409 ## CloseGap 0 4 3 / 18 = 0.16667 0.00242 ## HealGap 0 2 0 / 42 = 0.00000 0.00000 ## MoveGap 0 1 1 / 29 = 0.03448 0.00942 ## ReduceConstraint 0 0 0 / 40 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 4 / 104 = 0.03846 0.11825 ## InsertFragment 0 0 0 / 17 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 80 = 0.00000 0.00000 ## CrossOver 1 2 1 / 27 = 0.03704 0.00842 ## DoubleCross 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 15 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 44 = 0.04545 0.02371 # TweakPsiPhi removed gap before (T0547)L557 # TweakPhi removed gap before (T0547)K264 # TweakPsiPhi removed gap before (T0547)T409 # TweakPhi removed gap before (T0547)L574 # TweakPsiPhi removed gap before (T0547)L38 # TweakPsiPhi removed gap before (T0547)D33 # TweakPsiSubtree removed gap before (T0547)N65 # TweakPhi removed gap before (T0547)E361 # TweakPsiPhi removed gap before (T0547)Y104 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)D564 # TweakPsiSubtree removed gap before (T0547)K71 # TweakPsiSubtree removed gap before (T0547)K582 # TweakPsiPhi removed gap before (T0547)W9 # TweakPsiSubtree removed gap before (T0547)G78 # TweakPhi removed gap before (T0547)I16 # TweakPsiPhi removed gap before (T0547)G262 # TweakPhi removed gap before (T0547)M229 # TweakPsiPhi removed gap before (T0547)D503 # TweakPsiSubtree removed gap before (T0547)K245 # TweakPsiPhi removed gap before (T0547)H532 # TweakPhi removed gap before (T0547)I432 # generation 13: best score out of 20: T0547.try1-opt1-scwrl 199.30748 cost/residue, 1264 clashes 0.16366 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 4 / 12 = 0.33333 0.00931 ## JiggleSubtree 0 4 3 / 31 = 0.09677 0.01224 ## JiggleSegment 0 3 2 / 21 = 0.09524 0.01219 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 1 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 33 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 1 2 / 69 = 0.02899 0.08146 ## TweakPhiSubtree 3 10 7 / 21 = 0.33333 0.00707 ## TweakPhiSegment 1 14 11 / 32 = 0.34375 0.01079 ## TweakPsiSubtree 0 7 9 / 30 = 0.30000 0.00828 ## TweakPsiSegment 0 23 23 / 49 = 0.46939 0.03281 ## TweakPsiPhiSubtree 4 21 22 / 38 = 0.57895 0.01468 ## TweakPsiPhiSegment 2 19 15 / 42 = 0.35714 0.01088 ## TweakHbondSubtree 0 8 8 / 31 = 0.25806 0.02164 ## TweakHbondSegment 0 10 8 / 26 = 0.30769 0.00901 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 2 / 6 = 0.33333 0.00065 ## FixOmega 1 1 1 / 28 = 0.03571 0.01556 ## Backrub 5 12 5 / 37 = 0.13514 0.00222 ## BigBackrub 3 13 8 / 36 = 0.22222 0.01138 ## OneRotamer 0 28 11 / 101 = 0.10891 0.00762 ## ClashingRotamer 0 0 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 4 4 3 / 38 = 0.07895 0.01104 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 74 = 0.04054 0.05043 ## CloseGap 0 4 3 / 19 = 0.15789 0.00230 ## HealGap 0 2 0 / 48 = 0.00000 0.00000 ## MoveGap 0 2 1 / 32 = 0.03125 0.00853 ## ReduceConstraint 0 0 0 / 41 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 4 / 114 = 0.03509 0.10788 ## InsertFragment 0 2 2 / 21 = 0.09524 0.02279 ## TwoFragment 0 0 0 / 86 = 0.00000 0.00000 ## CrossOver 1 2 1 / 28 = 0.03571 0.00812 ## DoubleCross 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 16 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 45 = 0.04444 0.02318 # Can't patch backbone between (T0547)E505 and (T0547)K506 because distance= 3.706 not near ideal 3.804 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPsiSubtree removed gap before (T0547)L389 # TweakPsiPhi removed gap before (T0547)W454 # TweakPhi removed gap before (T0547)I153 # TweakPsiSubtree removed gap before (T0547)K493 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)L563 # TweakPsiPhi removed gap before (T0547)F93 # TweakPhi removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)T154 # TweakPhi removed gap before (T0547)L362 # TweakPsiPhi removed gap before (T0547)L100 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPsiSubtree removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)L248 # TweakPsiPhi removed gap before (T0547)I32 # TweakPsiPhi removed gap before (T0547)G45 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K587 # generation 14: best score out of 20: T0547.try1-opt1-scwrl 198.84700 cost/residue, 1243 clashes 0.16128 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 4 / 13 = 0.30769 0.00859 ## JiggleSubtree 0 5 4 / 33 = 0.12121 0.01330 ## JiggleSegment 0 3 2 / 25 = 0.08000 0.01024 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 1 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 34 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 24 = 0.04167 0.02195 ## ShiftSegment 0 1 2 / 76 = 0.02632 0.07396 ## TweakPhiSubtree 3 12 8 / 23 = 0.34783 0.00741 ## TweakPhiSegment 1 14 11 / 34 = 0.32353 0.01016 ## TweakPsiSubtree 0 7 9 / 30 = 0.30000 0.00828 ## TweakPsiSegment 0 27 27 / 58 = 0.46552 0.02985 ## TweakPsiPhiSubtree 4 23 25 / 42 = 0.59524 0.01617 ## TweakPsiPhiSegment 3 19 16 / 44 = 0.36364 0.01052 ## TweakHbondSubtree 0 8 8 / 34 = 0.23529 0.01973 ## TweakHbondSegment 0 11 9 / 29 = 0.31034 0.00853 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 3 / 9 = 0.33333 0.00205 ## FixOmega 1 1 1 / 32 = 0.03125 0.01361 ## Backrub 6 12 5 / 38 = 0.13158 0.00216 ## BigBackrub 3 13 8 / 37 = 0.21622 0.01107 ## OneRotamer 0 30 14 / 107 = 0.13084 0.00805 ## ClashingRotamer 0 0 0 / 20 = 0.00000 0.00000 ## ClusteredRotamer 4 4 3 / 40 = 0.07500 0.01049 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 76 = 0.03947 0.04910 ## CloseGap 0 5 4 / 22 = 0.18182 0.00264 ## HealGap 0 2 0 / 50 = 0.00000 0.00000 ## MoveGap 0 2 1 / 32 = 0.03125 0.00853 ## ReduceConstraint 0 1 1 / 45 = 0.02222 0.00843 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 4 / 121 = 0.03306 0.10164 ## InsertFragment 0 2 2 / 27 = 0.07407 0.01772 ## TwoFragment 0 0 0 / 93 = 0.00000 0.00000 ## CrossOver 1 2 1 / 31 = 0.03226 0.00734 ## DoubleCross 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 16 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 49 = 0.04082 0.02129 # TweakPsiPhi removed gap before (T0547)L118 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)E488 # TweakPhi removed gap before (T0547)A110 # TweakPsiPhi removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)S608 # TweakPsiSubtree removed gap before (T0547)N508 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)S445 # TweakPsiPhi removed gap before (T0547)I16 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)S608 # TweakPsiPhi removed gap before (T0547)I407 # TweakPhi removed gap before (T0547)K27 # TweakPsiSubtree removed gap before (T0547)L429 # TweakPsiPhi removed gap before (T0547)W454 # TweakPhi removed gap before (T0547)E338 # TweakPsiSubtree removed gap before (T0547)T256 # generation 15: best score out of 20: T0547.try1-opt1-scwrl 198.62250 cost/residue, 1277 clashes 0.16816 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 7 6 / 15 = 0.40000 0.04208 ## JiggleSubtree 0 5 4 / 37 = 0.10811 0.01186 ## JiggleSegment 0 3 2 / 27 = 0.07407 0.00948 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 1 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 36 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 28 = 0.03571 0.01881 ## ShiftSegment 0 1 2 / 79 = 0.02532 0.07115 ## TweakPhiSubtree 3 14 9 / 26 = 0.34615 0.00849 ## TweakPhiSegment 1 15 11 / 36 = 0.30556 0.00959 ## TweakPsiSubtree 0 9 10 / 33 = 0.30303 0.00819 ## TweakPsiSegment 0 31 29 / 63 = 0.46032 0.03038 ## TweakPsiPhiSubtree 4 23 25 / 45 = 0.55556 0.01510 ## TweakPsiPhiSegment 3 19 18 / 46 = 0.39130 0.01076 ## TweakHbondSubtree 0 8 8 / 36 = 0.22222 0.01863 ## TweakHbondSegment 0 11 10 / 30 = 0.33333 0.00901 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 3 / 10 = 0.30000 0.00184 ## FixOmega 1 1 1 / 34 = 0.02941 0.01281 ## Backrub 6 12 5 / 38 = 0.13158 0.00216 ## BigBackrub 4 13 8 / 37 = 0.21622 0.01107 ## OneRotamer 0 35 15 / 117 = 0.12821 0.00758 ## ClashingRotamer 0 0 0 / 20 = 0.00000 0.00000 ## ClusteredRotamer 4 5 5 / 43 = 0.11628 0.01162 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 84 = 0.03571 0.04443 ## CloseGap 0 6 6 / 25 = 0.24000 0.00416 ## HealGap 0 2 0 / 52 = 0.00000 0.00000 ## MoveGap 0 2 1 / 36 = 0.02778 0.00758 ## ReduceConstraint 0 1 1 / 49 = 0.02041 0.00774 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 4 / 127 = 0.03150 0.09684 ## InsertFragment 0 2 2 / 31 = 0.06452 0.01544 ## TwoFragment 0 0 0 / 96 = 0.00000 0.00000 ## CrossOver 1 2 1 / 33 = 0.03030 0.00689 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 17 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 50 = 0.04000 0.02086 # TweakPsiPhi removed gap before (T0547)L139 # TweakPsiPhi removed gap before (T0547)Y491 # TweakPsiPhi removed gap before (T0547)A334 # TweakPsiPhi removed gap before (T0547)F66 # TweakPsiSubtree removed gap before (T0547)T534 # TweakPhi removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)Y104 # TweakPhi removed gap before (T0547)N67 # TweakPhi removed gap before (T0547)N216 # TweakPsiSubtree removed gap before (T0547)I32 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPsiPhi removed gap before (T0547)L155 # TweakPhi removed gap before (T0547)T209 # TweakPsiPhi removed gap before (T0547)F227 # TweakPsiSubtree removed gap before (T0547)S477 # generation 16: best score out of 20: T0547.try1-opt1-scwrl 198.59737 cost/residue, 1277 clashes 0.16816 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 7 / 22 = 0.31818 0.02984 ## JiggleSubtree 0 5 4 / 38 = 0.10526 0.01155 ## JiggleSegment 0 3 3 / 32 = 0.09375 0.00913 ## OptSubtree 0 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 1 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 37 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 30 = 0.03333 0.01756 ## ShiftSegment 0 1 2 / 86 = 0.02326 0.06536 ## TweakPhiSubtree 3 14 9 / 28 = 0.32143 0.00789 ## TweakPhiSegment 1 16 13 / 38 = 0.34211 0.01069 ## TweakPsiSubtree 0 9 10 / 34 = 0.29412 0.00795 ## TweakPsiSegment 0 32 31 / 67 = 0.46269 0.02906 ## TweakPsiPhiSubtree 4 26 25 / 48 = 0.52083 0.01415 ## TweakPsiPhiSegment 4 19 19 / 49 = 0.38776 0.01101 ## TweakHbondSubtree 0 9 9 / 38 = 0.23684 0.01935 ## TweakHbondSegment 0 13 11 / 33 = 0.33333 0.00857 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 3 / 11 = 0.27273 0.00167 ## FixOmega 2 1 1 / 36 = 0.02778 0.01210 ## Backrub 6 13 6 / 41 = 0.14634 0.00230 ## BigBackrub 4 13 9 / 38 = 0.23684 0.01244 ## OneRotamer 0 38 17 / 122 = 0.13934 0.00836 ## ClashingRotamer 0 0 0 / 20 = 0.00000 0.00000 ## ClusteredRotamer 5 5 5 / 46 = 0.10870 0.01086 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 85 = 0.03529 0.04390 ## CloseGap 0 6 6 / 31 = 0.19355 0.00335 ## HealGap 0 2 0 / 59 = 0.00000 0.00000 ## MoveGap 0 2 1 / 38 = 0.02632 0.00719 ## ReduceConstraint 0 1 1 / 51 = 0.01961 0.00744 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 4 / 136 = 0.02941 0.09043 ## InsertFragment 0 2 2 / 35 = 0.05714 0.01367 ## TwoFragment 0 0 0 / 102 = 0.00000 0.00000 ## CrossOver 1 2 1 / 34 = 0.02941 0.00669 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 18 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 52 = 0.05769 0.02262 # TweakPhi removed gap before (T0547)A345 # TweakPhi removed gap before (T0547)I350 # TweakPhi removed gap before (T0547)D422 # TweakPsiSubtree removed gap before (T0547)K582 # TweakPhi removed gap before (T0547)H233 # TweakPsiPhi removed gap before (T0547)G322 # TweakPsiSubtree removed gap before (T0547)G544 # TweakPsiSubtree removed gap before (T0547)A81 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I382 # TweakPhi removed gap before (T0547)K76 # TweakPsiSubtree removed gap before (T0547)V397 # generation 17: best score out of 20: T0547.try1-opt1-scwrl 198.43274 cost/residue, 1283 clashes 0.16825 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 9 / 28 = 0.32143 0.02531 ## JiggleSubtree 0 5 4 / 39 = 0.10256 0.01125 ## JiggleSegment 0 3 3 / 33 = 0.09091 0.00886 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 1 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 37 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 33 = 0.03030 0.01596 ## ShiftSegment 0 1 2 / 97 = 0.02062 0.05795 ## TweakPhiSubtree 3 15 9 / 31 = 0.29032 0.00712 ## TweakPhiSegment 1 16 14 / 41 = 0.34146 0.01122 ## TweakPsiSubtree 0 9 10 / 34 = 0.29412 0.00795 ## TweakPsiSegment 0 36 33 / 72 = 0.45833 0.02743 ## TweakPsiPhiSubtree 4 26 25 / 48 = 0.52083 0.01415 ## TweakPsiPhiSegment 4 19 20 / 50 = 0.40000 0.01089 ## TweakHbondSubtree 0 11 11 / 42 = 0.26190 0.01942 ## TweakHbondSegment 0 14 13 / 38 = 0.34211 0.01094 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 3 / 14 = 0.21429 0.00132 ## FixOmega 2 1 1 / 38 = 0.02632 0.01146 ## Backrub 7 15 8 / 46 = 0.17391 0.00281 ## BigBackrub 4 13 9 / 38 = 0.23684 0.01244 ## OneRotamer 0 39 19 / 127 = 0.14961 0.00812 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 6 5 5 / 49 = 0.10204 0.01020 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 89 = 0.03371 0.04193 ## CloseGap 0 6 6 / 36 = 0.16667 0.00289 ## HealGap 0 2 0 / 59 = 0.00000 0.00000 ## MoveGap 0 2 1 / 39 = 0.02564 0.00700 ## ReduceConstraint 0 1 1 / 55 = 0.01818 0.00690 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 4 / 142 = 0.02817 0.08661 ## InsertFragment 0 2 2 / 37 = 0.05405 0.01293 ## TwoFragment 0 0 0 / 108 = 0.00000 0.00000 ## CrossOver 1 3 2 / 37 = 0.05405 0.01060 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 18 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 53 = 0.05660 0.02219 # TweakPhi removed gap before (T0547)R185 # TweakPsiPhi removed gap before (T0547)E250 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)M525 # TweakPsiPhi removed gap before (T0547)I382 # TweakPsiPhi removed gap before (T0547)K245 # TweakPsiSubtree removed gap before (T0547)P451 # TweakPsiPhi removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)R50 # TweakPsiPhi removed gap before (T0547)V277 # TweakPsiSubtree removed gap before (T0547)N13 # TweakPhi removed gap before (T0547)R70 # TweakPsiPhi removed gap before (T0547)I6 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)H233 # TweakPhi removed gap before (T0547)G92 # TweakPsiSubtree removed gap before (T0547)Y509 # TweakPhi removed gap before (T0547)E72 # TweakPhi removed gap before (T0547)N61 # TweakPsiPhi removed gap before (T0547)N24 # TweakPhi removed gap before (T0547)Q237 # TweakPsiPhi removed gap before (T0547)G610 # generation 18: best score out of 20: T0547.try1-opt1-scwrl 198.40567 cost/residue, 1282 clashes 0.16825 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 9 / 31 = 0.29032 0.02286 ## JiggleSubtree 0 5 4 / 41 = 0.09756 0.01070 ## JiggleSegment 0 3 3 / 36 = 0.08333 0.00812 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 1 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 38 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 34 = 0.02941 0.01549 ## ShiftSegment 0 1 2 / 102 = 0.01961 0.05511 ## TweakPhiSubtree 3 15 9 / 32 = 0.28125 0.00690 ## TweakPhiSegment 1 19 17 / 47 = 0.36170 0.01220 ## TweakPsiSubtree 0 9 10 / 36 = 0.27778 0.00751 ## TweakPsiSegment 0 38 35 / 74 = 0.47297 0.02753 ## TweakPsiPhiSubtree 5 28 27 / 53 = 0.50943 0.01384 ## TweakPsiPhiSegment 5 21 23 / 56 = 0.41071 0.01048 ## TweakHbondSubtree 0 13 13 / 45 = 0.28889 0.01835 ## TweakHbondSegment 0 14 13 / 39 = 0.33333 0.01066 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 3 / 14 = 0.21429 0.00132 ## FixOmega 2 1 1 / 40 = 0.02500 0.01089 ## Backrub 7 16 9 / 48 = 0.18750 0.00270 ## BigBackrub 6 14 10 / 39 = 0.25641 0.01321 ## OneRotamer 0 43 22 / 140 = 0.15714 0.00845 ## ClashingRotamer 0 0 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 6 5 5 / 53 = 0.09434 0.00943 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 90 = 0.03333 0.04147 ## CloseGap 0 6 6 / 37 = 0.16216 0.00281 ## HealGap 0 2 0 / 62 = 0.00000 0.00000 ## MoveGap 0 2 1 / 40 = 0.02500 0.00683 ## ReduceConstraint 0 1 1 / 56 = 0.01786 0.00677 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 4 / 145 = 0.02759 0.08482 ## InsertFragment 0 2 2 / 39 = 0.05128 0.01227 ## TwoFragment 0 0 0 / 122 = 0.00000 0.00000 ## CrossOver 1 3 2 / 39 = 0.05128 0.01005 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 19 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 56 = 0.05357 0.02100 # TweakPhi removed gap before (T0547)N425 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K264 # TweakPhi removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)D3 # TweakPhi removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPhi removed gap before (T0547)F51 # TweakPhi removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)I302 # TweakPsiPhi removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)K582 # TweakPsiPhi removed gap before (T0547)L515 # TweakPsiSubtree removed gap before (T0547)L411 # TweakPsiSubtree removed gap before (T0547)E213 # TweakPsiPhi removed gap before (T0547)K113 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)G64 # TweakPhi removed gap before (T0547)D452 # TweakPsiPhi removed gap before (T0547)I302 # TweakPsiPhi removed gap before (T0547)I489 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)L97 # TweakPhi removed gap before (T0547)H233 # TweakPsiSubtree removed gap before (T0547)K589 # BackrubGuts cancelled---proline or break # generation 19: best score out of 20: T0547.try1-opt1-scwrl 198.25108 cost/residue, 1278 clashes 0.17088 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 9 / 33 = 0.27273 0.02147 ## JiggleSubtree 0 5 4 / 45 = 0.08889 0.00975 ## JiggleSegment 0 3 3 / 39 = 0.07692 0.00749 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 1 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 39 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 36 = 0.02778 0.01463 ## ShiftSegment 0 1 2 / 104 = 0.01923 0.05405 ## TweakPhiSubtree 3 16 10 / 33 = 0.30303 0.00670 ## TweakPhiSegment 1 21 19 / 53 = 0.35849 0.01194 ## TweakPsiSubtree 0 10 10 / 41 = 0.24390 0.00659 ## TweakPsiSegment 0 39 36 / 80 = 0.45000 0.02552 ## TweakPsiPhiSubtree 5 30 28 / 57 = 0.49123 0.01291 ## TweakPsiPhiSegment 5 22 24 / 59 = 0.40678 0.01048 ## TweakHbondSubtree 0 13 13 / 46 = 0.28261 0.01795 ## TweakHbondSegment 0 14 14 / 42 = 0.33333 0.01000 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 3 / 16 = 0.18750 0.00115 ## FixOmega 2 1 1 / 43 = 0.02326 0.01013 ## Backrub 7 17 10 / 52 = 0.19231 0.00252 ## BigBackrub 10 16 11 / 43 = 0.25581 0.01202 ## OneRotamer 0 44 22 / 145 = 0.15172 0.00816 ## ClashingRotamer 0 0 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 6 5 5 / 53 = 0.09434 0.00943 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 95 = 0.03158 0.03928 ## CloseGap 0 7 7 / 40 = 0.17500 0.00646 ## HealGap 0 2 0 / 63 = 0.00000 0.00000 ## MoveGap 0 2 1 / 40 = 0.02500 0.00683 ## ReduceConstraint 0 1 1 / 63 = 0.01587 0.00602 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 4 / 152 = 0.02632 0.08091 ## InsertFragment 0 2 2 / 41 = 0.04878 0.01167 ## TwoFragment 0 0 0 / 129 = 0.00000 0.00000 ## CrossOver 1 3 2 / 41 = 0.04878 0.00956 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 19 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 57 = 0.05263 0.02064 # TweakPhi removed gap before (T0547)L217 # TweakPsiPhi removed gap before (T0547)E158 # TweakPsiPhi removed gap before (T0547)K44 # TweakPsiPhi removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPhi removed gap before (T0547)L497 # TweakPsiPhi removed gap before (T0547)D501 # TweakPsiPhi removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)Q437 # TweakPsiSubtree removed gap before (T0547)G192 # TweakPhi removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)S197 # TweakPsiPhi removed gap before (T0547)I417 # generation 20: best score out of 20: T0547.try1-opt1-scwrl 198.12474 cost/residue, 1266 clashes 0.17206 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 11 / 37 = 0.29730 0.01974 ## JiggleSubtree 0 5 4 / 47 = 0.08511 0.00934 ## JiggleSegment 0 4 4 / 40 = 0.10000 0.01046 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 1 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 39 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 40 = 0.02500 0.01317 ## ShiftSegment 0 1 2 / 109 = 0.01835 0.05157 ## TweakPhiSubtree 3 18 12 / 35 = 0.34286 0.00776 ## TweakPhiSegment 1 21 19 / 54 = 0.35185 0.01172 ## TweakPsiSubtree 0 10 10 / 41 = 0.24390 0.00659 ## TweakPsiSegment 0 41 37 / 83 = 0.44578 0.02492 ## TweakPsiPhiSubtree 5 31 30 / 63 = 0.47619 0.01230 ## TweakPsiPhiSegment 5 23 25 / 60 = 0.41667 0.01105 ## TweakHbondSubtree 0 15 15 / 51 = 0.29412 0.01794 ## TweakHbondSegment 0 17 16 / 46 = 0.34783 0.01084 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 3 / 17 = 0.17647 0.00108 ## FixOmega 2 1 1 / 45 = 0.02222 0.00968 ## Backrub 7 19 11 / 54 = 0.20370 0.00294 ## BigBackrub 10 16 11 / 44 = 0.25000 0.01174 ## OneRotamer 0 48 24 / 152 = 0.15789 0.00810 ## ClashingRotamer 0 0 0 / 25 = 0.00000 0.00000 ## ClusteredRotamer 7 5 5 / 55 = 0.09091 0.00908 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 99 = 0.03030 0.03770 ## CloseGap 0 7 7 / 44 = 0.15909 0.00588 ## HealGap 0 2 0 / 64 = 0.00000 0.00000 ## MoveGap 0 2 1 / 44 = 0.02273 0.00621 ## ReduceConstraint 0 1 1 / 69 = 0.01449 0.00550 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 4 / 158 = 0.02532 0.07784 ## InsertFragment 0 2 2 / 43 = 0.04651 0.01113 ## TwoFragment 0 0 0 / 133 = 0.00000 0.00000 ## CrossOver 1 3 2 / 46 = 0.04348 0.00852 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 21 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 60 = 0.05000 0.01960 # TweakPsiSubtree removed gap before (T0547)S341 # TweakPhi removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPhi removed gap before (T0547)S287 # TweakPhi removed gap before (T0547)I489 # TweakPsiPhi removed gap before (T0547)Y4 # TweakPsiPhi removed gap before (T0547)Q56 # TweakPhi removed gap before (T0547)A247 # TweakPsiPhi removed gap before (T0547)G199 # TweakPhi removed gap before (T0547)I382 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPsiPhi removed gap before (T0547)K283 # TweakPsiSubtree removed gap before (T0547)D564 # TweakPsiSubtree removed gap before (T0547)D564 # TweakPsiPhi removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)W194 # TweakPhi removed gap before (T0547)A146 # TweakPsiPhi removed gap before (T0547)A121 # TweakPsiPhi removed gap before (T0547)L217 # TweakPhi removed gap before (T0547)V299 # TweakPsiPhi removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)Y363 # generation 21: best score out of 20: T0547.try1-opt1-scwrl 198.09436 cost/residue, 1265 clashes 0.17209 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 12 / 42 = 0.28571 0.01740 ## JiggleSubtree 0 5 4 / 48 = 0.08333 0.00914 ## JiggleSegment 0 4 4 / 43 = 0.09302 0.00973 ## OptSubtree 0 0 0 / 27 = 0.00000 0.00000 ## OptSegment 0 1 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 39 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 43 = 0.02326 0.01225 ## ShiftSegment 0 1 2 / 115 = 0.01739 0.04888 ## TweakPhiSubtree 3 19 14 / 37 = 0.37838 0.00807 ## TweakPhiSegment 1 24 22 / 60 = 0.36667 0.01097 ## TweakPsiSubtree 0 11 12 / 43 = 0.27907 0.00784 ## TweakPsiSegment 0 41 37 / 87 = 0.42529 0.02378 ## TweakPsiPhiSubtree 5 33 32 / 67 = 0.47761 0.01249 ## TweakPsiPhiSegment 5 25 28 / 66 = 0.42424 0.01070 ## TweakHbondSubtree 0 17 16 / 55 = 0.29091 0.01714 ## TweakHbondSegment 0 18 17 / 50 = 0.34000 0.01085 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 3 / 17 = 0.17647 0.00108 ## FixOmega 2 1 1 / 45 = 0.02222 0.00968 ## Backrub 7 20 12 / 57 = 0.21053 0.00288 ## BigBackrub 10 17 11 / 46 = 0.23913 0.01123 ## OneRotamer 0 48 24 / 155 = 0.15484 0.00794 ## ClashingRotamer 0 0 0 / 27 = 0.00000 0.00000 ## ClusteredRotamer 7 6 6 / 60 = 0.10000 0.00971 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 3 / 105 = 0.02857 0.03554 ## CloseGap 0 7 7 / 46 = 0.15217 0.00562 ## HealGap 0 2 0 / 66 = 0.00000 0.00000 ## MoveGap 0 2 1 / 45 = 0.02222 0.00607 ## ReduceConstraint 0 1 1 / 70 = 0.01429 0.00542 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 5 / 166 = 0.03012 0.07416 ## InsertFragment 0 2 2 / 45 = 0.04444 0.01063 ## TwoFragment 0 0 0 / 136 = 0.00000 0.00000 ## CrossOver 1 3 2 / 48 = 0.04167 0.00817 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 22 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 62 = 0.04839 0.01897 # TweakPhi removed gap before (T0547)L394 # TweakPhi removed gap before (T0547)D3 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Q458 # TweakPsiPhi removed gap before (T0547)F282 # TweakPsiSubtree removed gap before (T0547)E257 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPsiPhi removed gap before (T0547)K304 # TweakPsiSubtree removed gap before (T0547)T409 # TweakPhi removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)K526 # TweakPhi removed gap before (T0547)V516 # TweakPsiPhi removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)L378 # TweakPhi removed gap before (T0547)M261 # Closed gap before (T0547)L593 # TweakPsiPhi removed gap before (T0547)V584 # generation 22: best score out of 20: T0547.try1-opt1-scwrl 197.93956 cost/residue, 1260 clashes 0.17252 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 13 / 45 = 0.28889 0.01635 ## JiggleSubtree 0 5 4 / 49 = 0.08163 0.00895 ## JiggleSegment 0 4 4 / 48 = 0.08333 0.00872 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 1 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 41 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 44 = 0.02273 0.01197 ## ShiftSegment 0 1 2 / 120 = 0.01667 0.04684 ## TweakPhiSubtree 3 21 16 / 40 = 0.40000 0.01013 ## TweakPhiSegment 1 26 25 / 63 = 0.39683 0.01147 ## TweakPsiSubtree 0 11 12 / 44 = 0.27273 0.00766 ## TweakPsiSegment 0 41 38 / 90 = 0.42222 0.02342 ## TweakPsiPhiSubtree 7 35 35 / 71 = 0.49296 0.01221 ## TweakPsiPhiSegment 5 25 28 / 67 = 0.41791 0.01054 ## TweakHbondSubtree 0 18 17 / 60 = 0.28333 0.01742 ## TweakHbondSegment 0 18 18 / 53 = 0.33962 0.01079 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 4 / 18 = 0.22222 0.00108 ## FixOmega 2 1 1 / 45 = 0.02222 0.00968 ## Backrub 8 20 12 / 57 = 0.21053 0.00288 ## BigBackrub 10 17 11 / 48 = 0.22917 0.01076 ## OneRotamer 0 49 25 / 167 = 0.14970 0.00746 ## ClashingRotamer 0 0 0 / 27 = 0.00000 0.00000 ## ClusteredRotamer 7 6 6 / 64 = 0.09375 0.00911 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 107 = 0.03738 0.03632 ## CloseGap 0 7 7 / 52 = 0.13462 0.00497 ## HealGap 0 2 0 / 68 = 0.00000 0.00000 ## MoveGap 0 2 1 / 47 = 0.02128 0.00581 ## ReduceConstraint 0 1 1 / 74 = 0.01351 0.00513 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 29 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 5 / 173 = 0.02890 0.07116 ## InsertFragment 0 2 2 / 47 = 0.04255 0.01018 ## TwoFragment 0 0 0 / 142 = 0.00000 0.00000 ## CrossOver 2 3 2 / 49 = 0.04082 0.00800 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 24 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 66 = 0.04545 0.01782 # TweakPsiPhi removed gap before (T0547)L394 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K352 # TweakPsiSubtree removed gap before (T0547)R467 # TweakPsiSubtree removed gap before (T0547)A416 # TweakPhi removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)D480 # TweakPsiSubtree removed gap before (T0547)E320 # TweakPhi removed gap before (T0547)E125 # TweakPsiPhi removed gap before (T0547)G159 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I32 # TweakPsiPhi removed gap before (T0547)S608 # TweakPsiPhi removed gap before (T0547)A327 # TweakPhi removed gap before (T0547)A405 # TweakPsiSubtree removed gap before (T0547)L560 # TweakPsiSubtree removed gap before (T0547)N123 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N67 # TweakPsiPhi removed gap before (T0547)I16 # TweakPsiPhi removed gap before (T0547)E406 # TweakPhi removed gap before (T0547)L446 # generation 23: best score out of 20: T0547.try1-opt1-scwrl 197.88205 cost/residue, 1260 clashes 0.17252 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 14 / 47 = 0.29787 0.01579 ## JiggleSubtree 0 5 4 / 52 = 0.07692 0.00844 ## JiggleSegment 0 4 4 / 54 = 0.07407 0.00775 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 1 0 / 29 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 41 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 46 = 0.02174 0.01145 ## ShiftSegment 0 1 2 / 123 = 0.01626 0.04570 ## TweakPhiSubtree 3 21 16 / 42 = 0.38095 0.00965 ## TweakPhiSegment 1 29 27 / 66 = 0.40909 0.01266 ## TweakPsiSubtree 0 11 12 / 48 = 0.25000 0.00702 ## TweakPsiSegment 0 41 40 / 93 = 0.43011 0.02299 ## TweakPsiPhiSubtree 7 35 36 / 74 = 0.48649 0.01226 ## TweakPsiPhiSegment 5 26 29 / 72 = 0.40278 0.00995 ## TweakHbondSubtree 0 20 18 / 67 = 0.26866 0.01568 ## TweakHbondSegment 0 18 18 / 58 = 0.31034 0.00986 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 4 / 18 = 0.22222 0.00108 ## FixOmega 3 1 1 / 47 = 0.02128 0.00927 ## Backrub 9 22 14 / 60 = 0.23333 0.00320 ## BigBackrub 12 20 12 / 54 = 0.22222 0.01063 ## OneRotamer 0 52 27 / 177 = 0.15254 0.00760 ## ClashingRotamer 0 0 0 / 27 = 0.00000 0.00000 ## ClusteredRotamer 8 6 6 / 65 = 0.09231 0.00897 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 110 = 0.03636 0.03533 ## CloseGap 0 7 7 / 52 = 0.13462 0.00497 ## HealGap 0 2 0 / 71 = 0.00000 0.00000 ## MoveGap 0 2 1 / 47 = 0.02128 0.00581 ## ReduceConstraint 0 1 1 / 78 = 0.01282 0.00486 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 29 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 5 / 181 = 0.02762 0.06801 ## InsertFragment 0 2 2 / 51 = 0.03922 0.00938 ## TwoFragment 0 0 0 / 147 = 0.00000 0.00000 ## CrossOver 2 3 2 / 49 = 0.04082 0.00800 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 24 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 68 = 0.04412 0.01730 # TweakPhi removed gap before (T0547)D103 # TweakPhi removed gap before (T0547)L391 # TweakPsiSubtree removed gap before (T0547)I573 # TweakPsiSubtree removed gap before (T0547)F66 # TweakPhi removed gap before (T0547)K175 # TweakPhi removed gap before (T0547)V191 # TweakPsiSubtree removed gap before (T0547)K246 # TweakPhi removed gap before (T0547)A110 # TweakPsiSubtree removed gap before (T0547)G487 # TweakPsiPhi removed gap before (T0547)I166 # TweakPsiPhi removed gap before (T0547)E561 # TweakPsiPhi removed gap before (T0547)I153 # TweakPhi removed gap before (T0547)M2 # TweakPsiPhi removed gap before (T0547)R50 # TweakPhi removed gap before (T0547)Y509 # TweakPsiSubtree removed gap before (T0547)Y25 # TweakPhi removed gap before (T0547)F498 # TweakPsiSubtree removed gap before (T0547)S372 # TweakPhi removed gap before (T0547)E376 # TweakPsiSubtree removed gap before (T0547)W479 # TweakPsiSubtree removed gap before (T0547)K175 # generation 24: best score out of 20: T0547.try1-opt1-scwrl 197.76685 cost/residue, 1259 clashes 0.17250 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 17 / 54 = 0.31481 0.01577 ## JiggleSubtree 0 5 4 / 52 = 0.07692 0.00844 ## JiggleSegment 0 4 4 / 55 = 0.07273 0.00761 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 1 0 / 29 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 43 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 48 = 0.02083 0.01097 ## ShiftSegment 0 1 2 / 129 = 0.01550 0.04357 ## TweakPhiSubtree 3 22 19 / 47 = 0.40426 0.00907 ## TweakPhiSegment 1 30 29 / 70 = 0.41429 0.01310 ## TweakPsiSubtree 0 13 13 / 53 = 0.24528 0.00679 ## TweakPsiSegment 0 42 40 / 97 = 0.41237 0.02204 ## TweakPsiPhiSubtree 7 36 37 / 76 = 0.48684 0.01262 ## TweakPsiPhiSegment 5 27 30 / 74 = 0.40541 0.01123 ## TweakHbondSubtree 0 20 18 / 70 = 0.25714 0.01501 ## TweakHbondSegment 0 18 18 / 62 = 0.29032 0.00923 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 4 / 19 = 0.21053 0.00102 ## FixOmega 3 1 1 / 48 = 0.02083 0.00907 ## Backrub 9 24 15 / 62 = 0.24194 0.00314 ## BigBackrub 12 20 12 / 55 = 0.21818 0.01044 ## OneRotamer 0 54 29 / 188 = 0.15426 0.00723 ## ClashingRotamer 0 0 0 / 27 = 0.00000 0.00000 ## ClusteredRotamer 8 6 6 / 69 = 0.08696 0.00845 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 116 = 0.03448 0.03351 ## CloseGap 0 7 7 / 53 = 0.13208 0.00488 ## HealGap 0 2 0 / 72 = 0.00000 0.00000 ## MoveGap 0 2 1 / 48 = 0.02083 0.00569 ## ReduceConstraint 0 1 1 / 81 = 0.01235 0.00468 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 5 / 184 = 0.02717 0.06690 ## InsertFragment 0 2 2 / 53 = 0.03774 0.00903 ## TwoFragment 0 0 0 / 153 = 0.00000 0.00000 ## CrossOver 2 3 2 / 54 = 0.03704 0.00726 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 24 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 70 = 0.04286 0.01680 # TweakPsiSubtree removed gap before (T0547)H384 # TweakPhi removed gap before (T0547)E457 # TweakPsiPhi removed gap before (T0547)F513 # TweakPhi removed gap before (T0547)G143 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K267 # TweakPsiSubtree removed gap before (T0547)L206 # TweakPsiSubtree removed gap before (T0547)S539 # BackrubGuts cancelled---proline or break # Closed gap before (T0547)L593 # TweakPsiSubtree removed gap before (T0547)G199 # TweakPsiSubtree removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)E507 # TweakPhi removed gap before (T0547)G192 # TweakPhi removed gap before (T0547)Y83 # TweakPsiSubtree removed gap before (T0547)Q437 # TweakPsiPhi removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)K264 # TweakPsiPhi removed gap before (T0547)L48 # TweakPhi removed gap before (T0547)N575 # TweakPsiSubtree removed gap before (T0547)E406 # TweakPhi removed gap before (T0547)E148 # TweakPhi removed gap before (T0547)L362 # TweakPhi removed gap before (T0547)E115 # TweakPhi removed gap before (T0547)K267 # TweakPsiPhi removed gap before (T0547)L49 # TweakPhi removed gap before (T0547)Y104 # TweakPsiSubtree removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)L349 # generation 25: best score out of 20: T0547.try1-opt1-scwrl 197.58746 cost/residue, 1257 clashes 0.17220 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 17 19 / 59 = 0.32203 0.01554 ## JiggleSubtree 0 5 4 / 54 = 0.07407 0.00813 ## JiggleSegment 0 5 5 / 57 = 0.08772 0.00799 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 1 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 51 = 0.01961 0.01033 ## ShiftSegment 0 1 2 / 134 = 0.01493 0.04195 ## TweakPhiSubtree 3 25 21 / 55 = 0.38182 0.00905 ## TweakPhiSegment 1 32 31 / 75 = 0.41333 0.01337 ## TweakPsiSubtree 0 15 16 / 58 = 0.27586 0.00955 ## TweakPsiSegment 0 44 42 / 102 = 0.41176 0.02180 ## TweakPsiPhiSubtree 7 38 39 / 80 = 0.48750 0.01283 ## TweakPsiPhiSegment 5 28 31 / 75 = 0.41333 0.01121 ## TweakHbondSubtree 0 20 19 / 77 = 0.24675 0.01367 ## TweakHbondSegment 0 18 18 / 66 = 0.27273 0.00867 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 4 / 20 = 0.20000 0.00097 ## FixOmega 4 1 1 / 48 = 0.02083 0.00907 ## Backrub 10 24 15 / 63 = 0.23810 0.00309 ## BigBackrub 13 22 14 / 59 = 0.23729 0.01078 ## OneRotamer 0 55 30 / 194 = 0.15464 0.00741 ## ClashingRotamer 0 0 0 / 29 = 0.00000 0.00000 ## ClusteredRotamer 8 6 6 / 70 = 0.08571 0.00833 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 118 = 0.03390 0.03294 ## CloseGap 0 7 7 / 56 = 0.12500 0.00462 ## HealGap 0 2 0 / 72 = 0.00000 0.00000 ## MoveGap 0 2 1 / 50 = 0.02000 0.00546 ## ReduceConstraint 0 1 1 / 82 = 0.01220 0.00463 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 5 / 191 = 0.02618 0.06445 ## InsertFragment 0 2 2 / 54 = 0.03704 0.00886 ## TwoFragment 0 0 0 / 157 = 0.00000 0.00000 ## CrossOver 2 3 2 / 55 = 0.03636 0.00713 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 24 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 74 = 0.04054 0.01590 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiPhi removed gap before (T0547)G544 # TweakPhi removed gap before (T0547)V98 # TweakPsiSubtree removed gap before (T0547)L389 # TweakPhi removed gap before (T0547)N61 # TweakPsiPhi removed gap before (T0547)S387 # TweakPsiPhi removed gap before (T0547)Q448 # TweakPsiSubtree removed gap before (T0547)Q56 # TweakPsiPhi removed gap before (T0547)A30 # TweakPsiPhi removed gap before (T0547)N575 # TweakPhi removed gap before (T0547)L499 # TweakPsiSubtree removed gap before (T0547)T473 # TweakPsiSubtree removed gap before (T0547)H233 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPsiPhi removed gap before (T0547)R577 # Closed gap before (T0547)I200 # TweakPhi removed gap before (T0547)L258 # TweakPhi removed gap before (T0547)G181 # TweakPsiPhi removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)S579 # TweakPsiPhi removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)T531 # TweakPsiPhi removed gap before (T0547)G524 # TweakPsiSubtree removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)Y519 # TweakPsiPhi removed gap before (T0547)L391 # TweakPsiPhi removed gap before (T0547)N67 # TweakPsiPhi removed gap before (T0547)I59 # TweakPsiSubtree removed gap before (T0547)Y75 # generation 26: best score out of 20: T0547.try1-opt1-scwrl 197.55730 cost/residue, 1260 clashes 0.16485 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 19 20 / 65 = 0.30769 0.01418 ## JiggleSubtree 0 5 4 / 54 = 0.07407 0.00813 ## JiggleSegment 0 6 6 / 59 = 0.10169 0.00977 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 2 1 / 32 = 0.03125 0.00672 ## OptAllSegments 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 54 = 0.01852 0.00975 ## ShiftSegment 0 1 2 / 138 = 0.01449 0.04073 ## TweakPhiSubtree 3 25 21 / 57 = 0.36842 0.00873 ## TweakPhiSegment 1 32 31 / 78 = 0.39744 0.01286 ## TweakPsiSubtree 0 16 17 / 62 = 0.27419 0.00912 ## TweakPsiSegment 0 47 44 / 109 = 0.40367 0.02142 ## TweakPsiPhiSubtree 8 41 43 / 87 = 0.49425 0.01284 ## TweakPsiPhiSegment 6 29 31 / 80 = 0.38750 0.01051 ## TweakHbondSubtree 0 21 20 / 81 = 0.24691 0.01486 ## TweakHbondSegment 0 19 20 / 70 = 0.28571 0.00918 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 4 / 20 = 0.20000 0.00097 ## FixOmega 4 1 1 / 49 = 0.02041 0.00889 ## Backrub 10 25 16 / 65 = 0.24615 0.00322 ## BigBackrub 13 22 14 / 61 = 0.22951 0.01042 ## OneRotamer 0 57 31 / 206 = 0.15049 0.00712 ## ClashingRotamer 0 0 0 / 30 = 0.00000 0.00000 ## ClusteredRotamer 8 6 6 / 70 = 0.08571 0.00833 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 121 = 0.03306 0.03212 ## CloseGap 0 7 7 / 58 = 0.12069 0.00446 ## HealGap 0 2 0 / 74 = 0.00000 0.00000 ## MoveGap 0 2 1 / 52 = 0.01923 0.00525 ## ReduceConstraint 0 1 1 / 84 = 0.01190 0.00452 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 5 / 196 = 0.02551 0.06281 ## InsertFragment 0 2 2 / 57 = 0.03509 0.00840 ## TwoFragment 0 0 0 / 159 = 0.00000 0.00000 ## CrossOver 2 3 2 / 57 = 0.03509 0.00688 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 24 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 76 = 0.03947 0.01548 # TweakPhi removed gap before (T0547)Y104 # TweakPsiPhi removed gap before (T0547)V504 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)H410 # TweakPsiPhi removed gap before (T0547)R183 # TweakPhi removed gap before (T0547)Q342 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)D434 # TweakPhi removed gap before (T0547)S445 # TweakPsiPhi removed gap before (T0547)K493 # TweakPhi removed gap before (T0547)N373 # TweakPsiPhi removed gap before (T0547)D383 # TweakPhi removed gap before (T0547)I169 # TweakPsiPhi removed gap before (T0547)A569 # TweakPsiPhi removed gap before (T0547)S475 # TweakPhi removed gap before (T0547)A416 # TweakPsiPhi removed gap before (T0547)I537 # TweakPsiPhi removed gap before (T0547)L563 # TweakPsiSubtree removed gap before (T0547)D572 # TweakPhi removed gap before (T0547)E343 # TweakPsiPhi removed gap before (T0547)G143 # TweakPsiSubtree removed gap before (T0547)S208 # TweakPsiPhi removed gap before (T0547)K423 # TweakPsiPhi removed gap before (T0547)H242 # Can't patch backbone between (T0547)E505 and (T0547)K506 because distance= 3.706 not near ideal 3.804 # TweakPhi removed gap before (T0547)F460 # TweakPsiPhi removed gap before (T0547)S368 # TweakPsiPhi removed gap before (T0547)I8 # TweakPsiPhi removed gap before (T0547)E115 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K304 # TweakPhi removed gap before (T0547)T207 # generation 27: best score out of 20: T0547.try1-opt1-scwrl 197.44086 cost/residue, 1249 clashes 0.16457 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 20 21 / 68 = 0.30882 0.01375 ## JiggleSubtree 0 5 4 / 54 = 0.07407 0.00813 ## JiggleSegment 0 8 9 / 64 = 0.14062 0.01263 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 2 1 / 36 = 0.02778 0.00597 ## OptAllSegments 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 56 = 0.01786 0.00941 ## ShiftSegment 0 1 2 / 140 = 0.01429 0.04015 ## TweakPhiSubtree 3 25 22 / 63 = 0.34921 0.00894 ## TweakPhiSegment 1 34 34 / 82 = 0.41463 0.01242 ## TweakPsiSubtree 0 17 18 / 63 = 0.28571 0.01042 ## TweakPsiSegment 0 48 45 / 111 = 0.40541 0.02121 ## TweakPsiPhiSubtree 8 45 46 / 97 = 0.47423 0.01226 ## TweakPsiPhiSegment 6 32 35 / 88 = 0.39773 0.00968 ## TweakHbondSubtree 0 21 20 / 83 = 0.24096 0.01451 ## TweakHbondSegment 0 20 21 / 73 = 0.28767 0.00902 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 5 / 22 = 0.22727 0.00089 ## FixOmega 4 1 1 / 49 = 0.02041 0.00889 ## Backrub 15 25 16 / 66 = 0.24242 0.00317 ## BigBackrub 13 23 14 / 67 = 0.20896 0.00949 ## OneRotamer 0 58 32 / 213 = 0.15023 0.00692 ## ClashingRotamer 0 0 0 / 31 = 0.00000 0.00000 ## ClusteredRotamer 9 6 6 / 72 = 0.08333 0.00809 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 124 = 0.03226 0.03134 ## CloseGap 0 7 7 / 60 = 0.11667 0.00431 ## HealGap 0 2 0 / 77 = 0.00000 0.00000 ## MoveGap 0 2 1 / 52 = 0.01923 0.00525 ## ReduceConstraint 0 1 1 / 88 = 0.01136 0.00431 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 5 / 198 = 0.02525 0.06217 ## InsertFragment 0 2 2 / 60 = 0.03333 0.00798 ## TwoFragment 0 0 0 / 162 = 0.00000 0.00000 ## CrossOver 2 3 2 / 59 = 0.03390 0.00665 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 25 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 79 = 0.03797 0.01489 # TweakPsiSubtree removed gap before (T0547)D452 # TweakPsiSubtree removed gap before (T0547)S485 # TweakPhi removed gap before (T0547)D558 # TweakPsiPhi removed gap before (T0547)F93 # TweakPsiSubtree removed gap before (T0547)D136 # TweakPsiPhi removed gap before (T0547)L258 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)A30 # TweakPsiPhi removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)V98 # TweakPsiPhi removed gap before (T0547)S579 # TweakPsiSubtree removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)I417 # TweakPsiSubtree removed gap before (T0547)H527 # TweakPsiPhi removed gap before (T0547)I16 # TweakPsiPhi removed gap before (T0547)F599 # TweakPsiSubtree removed gap before (T0547)T534 # generation 28: best score out of 20: T0547.try1-opt1-scwrl 197.34006 cost/residue, 1247 clashes 0.17224 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 21 / 71 = 0.29577 0.01317 ## JiggleSubtree 0 5 4 / 54 = 0.07407 0.00813 ## JiggleSegment 0 9 11 / 75 = 0.14667 0.01139 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 2 1 / 42 = 0.02381 0.00512 ## OptAllSegments 0 0 0 / 45 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 59 = 0.01695 0.00893 ## ShiftSegment 0 1 2 / 142 = 0.01408 0.03958 ## TweakPhiSubtree 4 26 23 / 65 = 0.35385 0.01080 ## TweakPhiSegment 1 35 35 / 83 = 0.42169 0.01322 ## TweakPsiSubtree 0 18 20 / 67 = 0.29851 0.00995 ## TweakPsiSegment 0 50 47 / 115 = 0.40870 0.02109 ## TweakPsiPhiSubtree 9 47 50 / 102 = 0.49020 0.01236 ## TweakPsiPhiSegment 6 33 36 / 89 = 0.40449 0.00977 ## TweakHbondSubtree 0 21 21 / 85 = 0.24706 0.01419 ## TweakHbondSegment 0 21 21 / 78 = 0.26923 0.00844 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 5 / 23 = 0.21739 0.00086 ## FixOmega 4 1 1 / 50 = 0.02000 0.00871 ## Backrub 15 25 17 / 69 = 0.24638 0.00330 ## BigBackrub 14 23 14 / 68 = 0.20588 0.00935 ## OneRotamer 0 60 33 / 217 = 0.15207 0.00777 ## ClashingRotamer 0 0 0 / 32 = 0.00000 0.00000 ## ClusteredRotamer 9 7 7 / 73 = 0.09589 0.00827 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 129 = 0.03101 0.03013 ## CloseGap 0 7 7 / 62 = 0.11290 0.00417 ## HealGap 0 2 0 / 77 = 0.00000 0.00000 ## MoveGap 0 2 1 / 54 = 0.01852 0.00506 ## ReduceConstraint 0 1 1 / 89 = 0.01124 0.00426 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 6 / 206 = 0.02913 0.06065 ## InsertFragment 0 3 3 / 64 = 0.04688 0.00922 ## TwoFragment 0 0 0 / 169 = 0.00000 0.00000 ## CrossOver 2 3 2 / 61 = 0.03279 0.00643 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 28 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 80 = 0.03750 0.01470 # TweakPsiSubtree removed gap before (T0547)I15 # TweakPhi removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)L394 # TweakPsiPhi removed gap before (T0547)L47 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N88 # TweakPsiSubtree removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)D168 # TweakPsiPhi removed gap before (T0547)A119 # TweakPsiPhi removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)I432 # TweakPhi removed gap before (T0547)L606 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K203 # TweakPsiSubtree removed gap before (T0547)A69 # TweakPhi removed gap before (T0547)Y290 # TweakPsiSubtree removed gap before (T0547)G524 # TweakPhi removed gap before (T0547)R183 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPsiSubtree removed gap before (T0547)G549 # TweakPhi removed gap before (T0547)F530 # TweakPsiPhi removed gap before (T0547)Y597 # TweakPsiSubtree removed gap before (T0547)S490 # generation 29: best score out of 20: T0547.try1-opt1-scwrl 197.21033 cost/residue, 1246 clashes 0.17248 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 21 / 76 = 0.27632 0.01230 ## JiggleSubtree 0 5 4 / 56 = 0.07143 0.00784 ## JiggleSegment 0 10 12 / 77 = 0.15584 0.01278 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 2 1 / 45 = 0.02222 0.00478 ## OptAllSegments 0 0 0 / 46 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 61 = 0.01639 0.00864 ## ShiftSegment 0 1 2 / 149 = 0.01342 0.03772 ## TweakPhiSubtree 4 27 24 / 68 = 0.35294 0.01035 ## TweakPhiSegment 1 38 37 / 87 = 0.42529 0.01361 ## TweakPsiSubtree 0 20 21 / 71 = 0.29577 0.00942 ## TweakPsiSegment 0 54 48 / 121 = 0.39669 0.02008 ## TweakPsiPhiSubtree 9 47 50 / 106 = 0.47170 0.01190 ## TweakPsiPhiSegment 7 33 36 / 93 = 0.38710 0.00935 ## TweakHbondSubtree 0 21 21 / 88 = 0.23864 0.01370 ## TweakHbondSegment 0 21 21 / 80 = 0.26250 0.00823 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 5 / 23 = 0.21739 0.00086 ## FixOmega 4 1 1 / 51 = 0.01961 0.00854 ## Backrub 17 27 18 / 72 = 0.25000 0.00320 ## BigBackrub 15 23 16 / 70 = 0.22857 0.00945 ## OneRotamer 0 60 33 / 225 = 0.14667 0.00749 ## ClashingRotamer 0 0 0 / 33 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 77 = 0.09091 0.00784 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 134 = 0.02985 0.02901 ## CloseGap 0 7 7 / 65 = 0.10769 0.00398 ## HealGap 0 2 0 / 79 = 0.00000 0.00000 ## MoveGap 0 2 1 / 55 = 0.01818 0.00496 ## ReduceConstraint 0 1 1 / 91 = 0.01099 0.00417 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 6 / 211 = 0.02844 0.05921 ## InsertFragment 0 3 3 / 66 = 0.04545 0.00894 ## TwoFragment 0 0 0 / 175 = 0.00000 0.00000 ## CrossOver 2 3 2 / 61 = 0.03279 0.00643 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 29 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 81 = 0.03704 0.01452 # TweakPsiSubtree removed gap before (T0547)Q56 # TweakPhi removed gap before (T0547)L116 # TweakPhi removed gap before (T0547)E115 # TweakPsiPhi removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)D33 # TweakPhi removed gap before (T0547)H242 # TweakPhi removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)Y63 # TweakPsiPhi removed gap before (T0547)V436 # TweakPsiPhi removed gap before (T0547)L365 # TweakPsiPhi removed gap before (T0547)T531 # TweakPsiSubtree removed gap before (T0547)N13 # TweakPhi removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)F392 # TweakPhi removed gap before (T0547)I31 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPsiSubtree removed gap before (T0547)Q237 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)K310 # TweakPsiSubtree removed gap before (T0547)G181 # TweakPsiSubtree removed gap before (T0547)E488 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPhi removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)A189 # TweakPsiSubtree removed gap before (T0547)D452 # generation 30: best score out of 20: T0547.try1-opt1-scwrl 196.96294 cost/residue, 1228 clashes 0.17145 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 21 / 77 = 0.27273 0.01214 ## JiggleSubtree 0 6 5 / 60 = 0.08333 0.00760 ## JiggleSegment 0 12 14 / 84 = 0.16667 0.01729 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 2 1 / 46 = 0.02174 0.00467 ## OptAllSegments 0 0 0 / 48 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 64 = 0.01562 0.00823 ## ShiftSegment 0 1 2 / 151 = 0.01325 0.03722 ## TweakPhiSubtree 4 28 26 / 71 = 0.36620 0.01021 ## TweakPhiSegment 1 39 38 / 94 = 0.40426 0.01319 ## TweakPsiSubtree 0 21 22 / 75 = 0.29333 0.00895 ## TweakPsiSegment 0 57 52 / 129 = 0.40310 0.02044 ## TweakPsiPhiSubtree 10 47 51 / 109 = 0.46789 0.01230 ## TweakPsiPhiSegment 8 34 37 / 94 = 0.39362 0.00946 ## TweakHbondSubtree 0 23 23 / 92 = 0.25000 0.01471 ## TweakHbondSegment 0 23 23 / 88 = 0.26136 0.00762 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 5 / 23 = 0.21739 0.00086 ## FixOmega 4 1 1 / 53 = 0.01887 0.00822 ## Backrub 17 28 20 / 77 = 0.25974 0.00310 ## BigBackrub 15 25 19 / 78 = 0.24359 0.00914 ## OneRotamer 0 61 33 / 228 = 0.14474 0.00739 ## ClashingRotamer 0 0 0 / 33 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 77 = 0.09091 0.00784 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 136 = 0.02941 0.02858 ## CloseGap 0 7 7 / 68 = 0.10294 0.00380 ## HealGap 0 2 0 / 83 = 0.00000 0.00000 ## MoveGap 0 2 1 / 56 = 0.01786 0.00488 ## ReduceConstraint 0 1 1 / 94 = 0.01064 0.00404 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 6 / 213 = 0.02817 0.05865 ## InsertFragment 0 4 4 / 68 = 0.05882 0.01416 ## TwoFragment 0 0 0 / 180 = 0.00000 0.00000 ## CrossOver 2 3 2 / 62 = 0.03226 0.00632 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 29 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 82 = 0.03659 0.01434 # TweakPsiSubtree removed gap before (T0547)Y279 # TweakPhi removed gap before (T0547)L465 # TweakPsiPhi removed gap before (T0547)D298 # TweakPsiPhi removed gap before (T0547)Q588 # TweakPsiPhi removed gap before (T0547)S188 # TweakPsiPhi removed gap before (T0547)K222 # TweakPhi removed gap before (T0547)S555 # TweakPsiSubtree removed gap before (T0547)G524 # TweakPhi removed gap before (T0547)D494 # TweakPsiPhi removed gap before (T0547)I388 # TweakPsiPhi removed gap before (T0547)L118 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPsiPhi removed gap before (T0547)K352 # TweakPhi removed gap before (T0547)N18 # TweakPsiSubtree removed gap before (T0547)G159 # TweakPsiSubtree removed gap before (T0547)S236 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPsiSubtree removed gap before (T0547)D480 # TweakPsiPhi removed gap before (T0547)I32 # TweakPsiSubtree removed gap before (T0547)G273 # TweakPsiPhi removed gap before (T0547)D572 # TweakPsiPhi removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)F318 # TweakPsiPhi removed gap before (T0547)L248 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)F282 # TweakPsiSubtree removed gap before (T0547)E505 # TweakPsiPhi removed gap before (T0547)L118 # TweakPsiPhi removed gap before (T0547)L218 # generation 31: best score out of 20: T0547.try1-opt1-scwrl 196.92468 cost/residue, 1255 clashes 0.17133 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 21 / 79 = 0.26582 0.01183 ## JiggleSubtree 0 6 5 / 62 = 0.08065 0.00735 ## JiggleSegment 0 14 15 / 95 = 0.15789 0.01533 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 2 1 / 48 = 0.02083 0.00448 ## OptAllSegments 0 0 0 / 51 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 66 = 0.01515 0.00798 ## ShiftSegment 0 1 2 / 153 = 0.01307 0.03674 ## TweakPhiSubtree 4 29 27 / 73 = 0.36986 0.01083 ## TweakPhiSegment 1 40 39 / 96 = 0.40625 0.01297 ## TweakPsiSubtree 0 21 22 / 77 = 0.28571 0.00872 ## TweakPsiSegment 0 58 56 / 136 = 0.41176 0.02019 ## TweakPsiPhiSubtree 11 50 55 / 118 = 0.46610 0.01191 ## TweakPsiPhiSegment 10 38 39 / 100 = 0.39000 0.00909 ## TweakHbondSubtree 0 23 23 / 93 = 0.24731 0.01456 ## TweakHbondSegment 0 24 24 / 91 = 0.26374 0.00914 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 5 / 23 = 0.21739 0.00086 ## FixOmega 4 1 1 / 55 = 0.01818 0.00792 ## Backrub 18 28 21 / 81 = 0.25926 0.00322 ## BigBackrub 15 26 19 / 80 = 0.23750 0.00891 ## OneRotamer 0 63 35 / 231 = 0.15152 0.00734 ## ClashingRotamer 0 0 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 80 = 0.08750 0.00755 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 137 = 0.02920 0.02837 ## CloseGap 0 7 7 / 68 = 0.10294 0.00380 ## HealGap 0 2 0 / 84 = 0.00000 0.00000 ## MoveGap 0 3 2 / 57 = 0.03509 0.00974 ## ReduceConstraint 0 1 1 / 97 = 0.01031 0.00391 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 6 / 216 = 0.02778 0.05784 ## InsertFragment 0 5 5 / 75 = 0.06667 0.01331 ## TwoFragment 0 0 0 / 186 = 0.00000 0.00000 ## CrossOver 2 3 2 / 64 = 0.03125 0.00613 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 31 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 83 = 0.03614 0.01417 # TweakPsiSubtree removed gap before (T0547)K203 # TweakPhi removed gap before (T0547)Y75 # TweakPhi removed gap before (T0547)E125 # TweakPhi removed gap before (T0547)M450 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K414 # TweakPhi removed gap before (T0547)H500 # TweakPsiSubtree removed gap before (T0547)V184 # TweakPhi removed gap before (T0547)F14 # TweakPhi removed gap before (T0547)L420 # TweakPhi removed gap before (T0547)I350 # TweakPhi removed gap before (T0547)F513 # TweakPsiPhi removed gap before (T0547)E561 # TweakPsiSubtree removed gap before (T0547)S368 # TweakPsiSubtree removed gap before (T0547)P52 # TweakPhi removed gap before (T0547)E346 # TweakPsiPhi removed gap before (T0547)G192 # TweakPhi removed gap before (T0547)I578 # TweakPsiSubtree removed gap before (T0547)L515 # TweakPhi removed gap before (T0547)L97 # TweakPhi removed gap before (T0547)I537 # TweakPsiPhi removed gap before (T0547)F530 # TweakPhi removed gap before (T0547)I333 # generation 32: best score out of 20: T0547.try1-opt1-scwrl 196.63863 cost/residue, 1248 clashes 0.17139 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 22 / 82 = 0.26829 0.01166 ## JiggleSubtree 0 7 6 / 64 = 0.09375 0.00758 ## JiggleSegment 0 15 16 / 106 = 0.15094 0.01643 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 2 1 / 49 = 0.02041 0.00439 ## OptAllSegments 0 0 0 / 53 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 68 = 0.01471 0.00775 ## ShiftSegment 0 1 2 / 153 = 0.01307 0.03674 ## TweakPhiSubtree 4 31 29 / 81 = 0.35802 0.01111 ## TweakPhiSegment 1 42 40 / 101 = 0.39604 0.01233 ## TweakPsiSubtree 0 21 22 / 78 = 0.28205 0.00860 ## TweakPsiSegment 0 59 57 / 141 = 0.40426 0.01972 ## TweakPsiPhiSubtree 11 50 55 / 119 = 0.46218 0.01181 ## TweakPsiPhiSegment 11 39 39 / 102 = 0.38235 0.00891 ## TweakHbondSubtree 0 23 23 / 94 = 0.24468 0.01440 ## TweakHbondSegment 0 27 24 / 99 = 0.24242 0.00840 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 5 / 23 = 0.21739 0.00086 ## FixOmega 4 1 1 / 55 = 0.01818 0.00792 ## Backrub 19 28 21 / 82 = 0.25610 0.00318 ## BigBackrub 15 26 19 / 82 = 0.23171 0.00869 ## OneRotamer 0 63 35 / 235 = 0.14894 0.00721 ## ClashingRotamer 0 0 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 82 = 0.08537 0.00736 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 143 = 0.02797 0.02718 ## CloseGap 0 7 7 / 68 = 0.10294 0.00380 ## HealGap 0 2 0 / 84 = 0.00000 0.00000 ## MoveGap 0 3 2 / 61 = 0.03279 0.00910 ## ReduceConstraint 0 1 1 / 100 = 0.01000 0.00379 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 6 / 221 = 0.02715 0.05653 ## InsertFragment 0 6 6 / 87 = 0.06897 0.01271 ## TwoFragment 0 0 0 / 190 = 0.00000 0.00000 ## CrossOver 2 3 2 / 67 = 0.02985 0.00585 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 31 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 85 = 0.04706 0.01458 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L358 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPsiSubtree removed gap before (T0547)D562 # TweakPsiSubtree removed gap before (T0547)I412 # TweakPhi removed gap before (T0547)V522 # TweakPhi removed gap before (T0547)V277 # TweakPsiPhi removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)N24 # TweakPhi removed gap before (T0547)S236 # TweakPsiSubtree removed gap before (T0547)P176 # TweakPhi removed gap before (T0547)T390 # Closed gap before (T0547)L593 # TweakPsiSubtree removed gap before (T0547)F498 # TweakPhi removed gap before (T0547)L337 # TweakPhi removed gap before (T0547)I55 # TweakPhi removed gap before (T0547)E552 # TweakPsiPhi removed gap before (T0547)V442 # TweakPsiPhi removed gap before (T0547)N603 # TweakPhi removed gap before (T0547)E595 # TweakPhi removed gap before (T0547)I551 # TweakPhi removed gap before (T0547)Y25 # TweakPhi removed gap before (T0547)I254 # TweakPsiSubtree removed gap before (T0547)N404 # TweakPhi removed gap before (T0547)L420 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E548 # TweakPhi removed gap before (T0547)S581 # TweakPhi removed gap before (T0547)N123 # TweakPhi removed gap before (T0547)H410 # TweakPsiPhi removed gap before (T0547)L391 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPhi removed gap before (T0547)N216 # generation 33: best score out of 20: T0547.try1-opt1-scwrl 196.48990 cost/residue, 1232 clashes 0.17305 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 23 / 85 = 0.27059 0.01127 ## JiggleSubtree 0 7 6 / 64 = 0.09375 0.00758 ## JiggleSegment 0 16 18 / 111 = 0.16216 0.01626 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 2 1 / 50 = 0.02000 0.00430 ## OptAllSegments 0 0 0 / 53 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 70 = 0.01429 0.00752 ## ShiftSegment 0 1 2 / 156 = 0.01282 0.03603 ## TweakPhiSubtree 4 33 31 / 90 = 0.34444 0.01134 ## TweakPhiSegment 1 44 44 / 110 = 0.40000 0.01175 ## TweakPsiSubtree 0 21 22 / 80 = 0.27500 0.00839 ## TweakPsiSegment 0 61 59 / 147 = 0.40136 0.01994 ## TweakPsiPhiSubtree 12 52 56 / 122 = 0.45902 0.01221 ## TweakPsiPhiSegment 11 40 39 / 103 = 0.37864 0.00883 ## TweakHbondSubtree 0 27 25 / 102 = 0.24510 0.01423 ## TweakHbondSegment 0 27 25 / 102 = 0.24510 0.00815 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 5 / 23 = 0.21739 0.00086 ## FixOmega 4 1 1 / 58 = 0.01724 0.00751 ## Backrub 21 30 21 / 86 = 0.24419 0.00304 ## BigBackrub 16 26 19 / 82 = 0.23171 0.00869 ## OneRotamer 0 65 35 / 241 = 0.14523 0.00703 ## ClashingRotamer 0 0 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 84 = 0.08333 0.00719 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 146 = 0.02740 0.02662 ## CloseGap 0 7 7 / 71 = 0.09859 0.00364 ## HealGap 0 2 0 / 84 = 0.00000 0.00000 ## MoveGap 0 3 2 / 66 = 0.03030 0.00841 ## ReduceConstraint 0 1 1 / 101 = 0.00990 0.00376 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 6 / 225 = 0.02667 0.05553 ## InsertFragment 0 6 6 / 90 = 0.06667 0.01228 ## TwoFragment 0 0 0 / 196 = 0.00000 0.00000 ## CrossOver 2 3 2 / 67 = 0.02985 0.00585 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 32 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 89 = 0.04494 0.01393 # TweakPhi removed gap before (T0547)L365 # TweakPhi removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPhi removed gap before (T0547)F510 # TweakPhi removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)P178 # TweakPhi removed gap before (T0547)T228 # TweakPsiPhi removed gap before (T0547)L529 # TweakPhi removed gap before (T0547)D586 # TweakPsiPhi removed gap before (T0547)K607 # TweakPhi removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)N603 # TweakPhi removed gap before (T0547)L54 # TweakPhi removed gap before (T0547)L523 # TweakPsiSubtree removed gap before (T0547)G604 # TweakPsiSubtree removed gap before (T0547)N124 # TweakPsiPhi removed gap before (T0547)N541 # TweakPsiPhi removed gap before (T0547)E361 # TweakPsiSubtree removed gap before (T0547)P29 # TweakPsiSubtree removed gap before (T0547)I388 # TweakPsiPhi removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)S581 # TweakPsiPhi removed gap before (T0547)T473 # TweakPhi removed gap before (T0547)T209 # TweakPsiPhi removed gap before (T0547)F447 # TweakPhi removed gap before (T0547)L394 # TweakPsiPhi removed gap before (T0547)A251 # TweakPhi removed gap before (T0547)E26 # TweakPhi removed gap before (T0547)G111 # TweakPsiPhi removed gap before (T0547)I62 # generation 34: best score out of 20: T0547.try1-opt1-scwrl 196.36278 cost/residue, 1231 clashes 0.17179 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 24 / 86 = 0.27907 0.01139 ## JiggleSubtree 0 8 7 / 67 = 0.10448 0.00746 ## JiggleSegment 0 16 18 / 117 = 0.15385 0.01543 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 2 1 / 50 = 0.02000 0.00430 ## OptAllSegments 0 0 0 / 53 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 71 = 0.01408 0.00742 ## ShiftSegment 0 1 2 / 160 = 0.01250 0.03513 ## TweakPhiSubtree 4 34 32 / 96 = 0.33333 0.01124 ## TweakPhiSegment 1 46 47 / 117 = 0.40171 0.01213 ## TweakPsiSubtree 0 22 23 / 81 = 0.28395 0.00848 ## TweakPsiSegment 0 62 62 / 154 = 0.40260 0.02020 ## TweakPsiPhiSubtree 14 54 58 / 128 = 0.45312 0.01192 ## TweakPsiPhiSegment 11 41 41 / 107 = 0.38318 0.00889 ## TweakHbondSubtree 1 30 30 / 109 = 0.27523 0.01449 ## TweakHbondSegment 1 28 27 / 105 = 0.25714 0.00808 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 5 / 24 = 0.20833 0.00082 ## FixOmega 4 1 1 / 60 = 0.01667 0.00726 ## Backrub 21 30 21 / 88 = 0.23864 0.00297 ## BigBackrub 16 26 19 / 82 = 0.23171 0.00869 ## OneRotamer 0 66 35 / 248 = 0.14113 0.00684 ## ClashingRotamer 0 0 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 87 = 0.08046 0.00694 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 149 = 0.02685 0.02609 ## CloseGap 0 8 8 / 74 = 0.10811 0.00576 ## HealGap 0 2 0 / 87 = 0.00000 0.00000 ## MoveGap 0 3 2 / 70 = 0.02857 0.00793 ## ReduceConstraint 0 1 1 / 103 = 0.00971 0.00368 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 6 / 230 = 0.02609 0.05432 ## InsertFragment 0 6 6 / 93 = 0.06452 0.01189 ## TwoFragment 0 0 0 / 199 = 0.00000 0.00000 ## CrossOver 2 3 2 / 67 = 0.02985 0.00585 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 33 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 91 = 0.04396 0.01362 # TweakPsiSubtree removed gap before (T0547)F232 # TweakPhi removed gap before (T0547)D103 # TweakPsiPhi removed gap before (T0547)E148 # TweakPsiSubtree removed gap before (T0547)V611 # TweakPsiSubtree removed gap before (T0547)D401 # TweakPhi removed gap before (T0547)E542 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)R183 # TweakPsiSubtree removed gap before (T0547)F282 # TweakPhi removed gap before (T0547)K28 # TweakPhi removed gap before (T0547)K493 # TweakPhi removed gap before (T0547)G205 # TweakPhi removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)D360 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N355 # TweakPsiSubtree removed gap before (T0547)F134 # TweakPsiSubtree removed gap before (T0547)I23 # TweakPsiSubtree removed gap before (T0547)P356 # TweakPhi removed gap before (T0547)L560 # TweakPsiPhi removed gap before (T0547)Y75 # TweakPhi removed gap before (T0547)A569 # TweakPsiSubtree removed gap before (T0547)S368 # TweakPsiPhi removed gap before (T0547)V397 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)L266 # generation 35: best score out of 20: T0547.try1-opt1-scwrl 196.08710 cost/residue, 1230 clashes 0.17579 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 25 / 87 = 0.28736 0.01152 ## JiggleSubtree 0 8 7 / 71 = 0.09859 0.00704 ## JiggleSegment 0 17 18 / 124 = 0.14516 0.01456 ## OptSubtree 0 0 0 / 35 = 0.00000 0.00000 ## OptSegment 0 2 1 / 54 = 0.01852 0.00398 ## OptAllSegments 0 0 0 / 53 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 73 = 0.01370 0.00722 ## ShiftSegment 0 1 2 / 160 = 0.01250 0.03513 ## TweakPhiSubtree 4 38 33 / 101 = 0.32673 0.01078 ## TweakPhiSegment 1 48 49 / 122 = 0.40164 0.01195 ## TweakPsiSubtree 0 23 25 / 85 = 0.29412 0.00867 ## TweakPsiSegment 0 64 62 / 162 = 0.38272 0.01920 ## TweakPsiPhiSubtree 14 56 60 / 131 = 0.45802 0.01195 ## TweakPsiPhiSegment 12 41 41 / 107 = 0.38318 0.00889 ## TweakHbondSubtree 1 32 32 / 113 = 0.28319 0.01448 ## TweakHbondSegment 1 29 28 / 107 = 0.26168 0.00811 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 5 / 24 = 0.20833 0.00082 ## FixOmega 4 1 1 / 61 = 0.01639 0.00714 ## Backrub 23 31 22 / 92 = 0.23913 0.00298 ## BigBackrub 16 26 19 / 83 = 0.22892 0.00858 ## OneRotamer 0 67 36 / 250 = 0.14400 0.00711 ## ClashingRotamer 0 0 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 87 = 0.08046 0.00694 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 161 = 0.02484 0.02414 ## CloseGap 0 8 8 / 77 = 0.10390 0.00553 ## HealGap 0 2 0 / 89 = 0.00000 0.00000 ## MoveGap 0 3 2 / 73 = 0.02740 0.00760 ## ReduceConstraint 0 1 1 / 105 = 0.00952 0.00361 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 7 / 234 = 0.02991 0.05457 ## InsertFragment 0 6 6 / 101 = 0.05941 0.01095 ## TwoFragment 0 0 0 / 203 = 0.00000 0.00000 ## CrossOver 2 3 2 / 67 = 0.02985 0.00585 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 36 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 92 = 0.04348 0.01347 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N24 # TweakPsiSubtree removed gap before (T0547)I269 # TweakPhi removed gap before (T0547)L224 # TweakPsiPhi removed gap before (T0547)H532 # TweakPhi removed gap before (T0547)L606 # TweakPhi removed gap before (T0547)E521 # TweakPhi removed gap before (T0547)Y597 # TweakPsiPhi removed gap before (T0547)E576 # TweakPhi removed gap before (T0547)F444 # Closed gap before (T0547)L593 # TweakPsiSubtree removed gap before (T0547)Q554 # TweakPsiPhi removed gap before (T0547)Y519 # TweakPsiSubtree removed gap before (T0547)Q458 # TweakPsiSubtree removed gap before (T0547)E457 # Closed gap before (T0547)L593 # TweakPsiPhi removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)L365 # TweakPhi removed gap before (T0547)E138 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G101 # generation 36: best score out of 20: T0547.try1-opt1-scwrl 195.96928 cost/residue, 1226 clashes 0.17593 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 25 / 88 = 0.28409 0.01139 ## JiggleSubtree 0 8 8 / 73 = 0.10959 0.00699 ## JiggleSegment 0 19 19 / 131 = 0.14504 0.01468 ## OptSubtree 0 0 0 / 35 = 0.00000 0.00000 ## OptSegment 0 2 1 / 56 = 0.01786 0.00384 ## OptAllSegments 0 0 0 / 54 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 76 = 0.01316 0.00693 ## ShiftSegment 0 1 2 / 164 = 0.01220 0.03427 ## TweakPhiSubtree 4 39 34 / 104 = 0.32692 0.01050 ## TweakPhiSegment 1 50 49 / 127 = 0.38583 0.01148 ## TweakPsiSubtree 0 26 29 / 92 = 0.31522 0.01007 ## TweakPsiSegment 0 65 63 / 167 = 0.37725 0.01863 ## TweakPsiPhiSubtree 14 56 61 / 132 = 0.46212 0.01189 ## TweakPsiPhiSegment 12 42 42 / 110 = 0.38182 0.00866 ## TweakHbondSubtree 1 35 33 / 118 = 0.27966 0.01471 ## TweakHbondSegment 1 32 30 / 112 = 0.26786 0.00790 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 5 / 26 = 0.19231 0.00076 ## FixOmega 4 1 1 / 62 = 0.01613 0.00703 ## Backrub 25 32 22 / 96 = 0.22917 0.00286 ## BigBackrub 17 26 19 / 85 = 0.22353 0.00838 ## OneRotamer 0 68 37 / 255 = 0.14510 0.00735 ## ClashingRotamer 0 0 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 89 = 0.07865 0.00679 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 165 = 0.02424 0.02356 ## CloseGap 0 8 8 / 82 = 0.09756 0.00520 ## HealGap 0 2 0 / 90 = 0.00000 0.00000 ## MoveGap 0 3 2 / 76 = 0.02632 0.00730 ## ReduceConstraint 0 1 1 / 107 = 0.00935 0.00355 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 7 / 239 = 0.02929 0.05343 ## InsertFragment 0 6 6 / 105 = 0.05714 0.01053 ## TwoFragment 0 0 0 / 205 = 0.00000 0.00000 ## CrossOver 2 3 2 / 68 = 0.02941 0.00577 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 36 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 94 = 0.04255 0.01319 # TweakPsiSubtree removed gap before (T0547)Q226 # TweakPhi removed gap before (T0547)F514 # Closed gap before (T0547)I200 # TweakPsiPhi removed gap before (T0547)A147 # TweakPsiSubtree removed gap before (T0547)T228 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)N253 # TweakPsiPhi removed gap before (T0547)L574 # TweakPsiSubtree removed gap before (T0547)K311 # TweakPhi removed gap before (T0547)Q226 # TweakPsiSubtree removed gap before (T0547)Q588 # TweakPhi removed gap before (T0547)M149 # TweakPsiPhi removed gap before (T0547)I333 # TweakPsiPhi removed gap before (T0547)G42 # TweakPhi removed gap before (T0547)M120 # TweakPsiPhi removed gap before (T0547)I269 # TweakPsiSubtree removed gap before (T0547)L365 # TweakPsiPhi removed gap before (T0547)Q424 # TweakPsiPhi removed gap before (T0547)V504 # TweakPhi removed gap before (T0547)V522 # TweakPsiPhi removed gap before (T0547)A536 # TweakPsiPhi removed gap before (T0547)Y366 # TweakPsiSubtree removed gap before (T0547)V299 # TweakPhi removed gap before (T0547)E138 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)V611 # generation 37: best score out of 20: T0547.try1-opt1-scwrl 195.92639 cost/residue, 1217 clashes 0.17518 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 28 26 / 93 = 0.27957 0.01158 ## JiggleSubtree 0 8 8 / 75 = 0.10667 0.00680 ## JiggleSegment 0 20 20 / 136 = 0.14706 0.01437 ## OptSubtree 0 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 2 1 / 56 = 0.01786 0.00384 ## OptAllSegments 0 0 0 / 55 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 78 = 0.01282 0.00675 ## ShiftSegment 0 1 2 / 166 = 0.01205 0.03386 ## TweakPhiSubtree 4 42 35 / 108 = 0.32407 0.01015 ## TweakPhiSegment 1 52 50 / 130 = 0.38462 0.01162 ## TweakPsiSubtree 0 26 33 / 100 = 0.33000 0.00938 ## TweakPsiSegment 0 65 64 / 171 = 0.37427 0.01832 ## TweakPsiPhiSubtree 15 57 62 / 136 = 0.45588 0.01162 ## TweakPsiPhiSegment 12 44 44 / 115 = 0.38261 0.00845 ## TweakHbondSubtree 1 35 33 / 124 = 0.26613 0.01400 ## TweakHbondSegment 1 34 30 / 120 = 0.25000 0.00737 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 10 7 / 28 = 0.25000 0.00150 ## FixOmega 4 1 1 / 63 = 0.01587 0.00691 ## Backrub 25 33 22 / 98 = 0.22449 0.00280 ## BigBackrub 17 26 19 / 86 = 0.22093 0.00829 ## OneRotamer 0 69 37 / 259 = 0.14286 0.00724 ## ClashingRotamer 0 0 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 91 = 0.07692 0.00664 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 165 = 0.02424 0.02356 ## CloseGap 0 8 8 / 87 = 0.09195 0.00490 ## HealGap 0 2 0 / 92 = 0.00000 0.00000 ## MoveGap 0 4 3 / 80 = 0.03750 0.00772 ## ReduceConstraint 0 1 1 / 110 = 0.00909 0.00345 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 7 / 240 = 0.02917 0.05320 ## InsertFragment 0 7 6 / 109 = 0.05505 0.01014 ## TwoFragment 0 0 0 / 210 = 0.00000 0.00000 ## CrossOver 2 3 2 / 68 = 0.02941 0.00577 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 38 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 96 = 0.04167 0.01291 # TweakPhi removed gap before (T0547)N18 # TweakPhi removed gap before (T0547)L266 # TweakPsiSubtree removed gap before (T0547)L600 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)E158 # TweakPhi removed gap before (T0547)N161 # TweakPsiSubtree removed gap before (T0547)R39 # TweakPsiSubtree removed gap before (T0547)H591 # TweakPsiSubtree removed gap before (T0547)N80 # TweakPsiSubtree removed gap before (T0547)S208 # TweakPsiPhi removed gap before (T0547)Y122 # TweakPhi removed gap before (T0547)N443 # TweakPsiSubtree removed gap before (T0547)M525 # TweakPhi removed gap before (T0547)L108 # TweakPsiSubtree removed gap before (T0547)K175 # TweakPsiSubtree removed gap before (T0547)K86 # TweakPsiPhi removed gap before (T0547)S287 # TweakPhi removed gap before (T0547)E26 # TweakPsiPhi removed gap before (T0547)S539 # TweakPsiPhi removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)L389 # Closed gap before (T0547)L593 # TweakPhi removed gap before (T0547)N105 # TweakPsiSubtree removed gap before (T0547)G544 # TweakPsiPhi removed gap before (T0547)I157 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPhi removed gap before (T0547)K219 # TweakPsiPhi removed gap before (T0547)E505 # TweakPhi removed gap before (T0547)L332 # TweakPsiPhi removed gap before (T0547)E386 # TweakPhi removed gap before (T0547)K196 # TweakPsiSubtree removed gap before (T0547)A247 # TweakPhi removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)A146 # TweakPsiSubtree removed gap before (T0547)S202 # TweakPsiPhi removed gap before (T0547)R288 # TweakPsiPhi removed gap before (T0547)G455 # TweakPsiSubtree removed gap before (T0547)S539 # generation 38: best score out of 20: T0547.try1-opt1-scwrl 195.90385 cost/residue, 1218 clashes 0.17536 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 28 27 / 95 = 0.28421 0.01140 ## JiggleSubtree 0 9 9 / 80 = 0.11250 0.00640 ## JiggleSegment 0 20 20 / 140 = 0.14286 0.01396 ## OptSubtree 0 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 2 1 / 56 = 0.01786 0.00384 ## OptAllSegments 0 0 0 / 55 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 80 = 0.01250 0.00658 ## ShiftSegment 0 1 2 / 167 = 0.01198 0.03366 ## TweakPhiSubtree 4 45 36 / 113 = 0.31858 0.00976 ## TweakPhiSegment 3 53 51 / 138 = 0.36957 0.01113 ## TweakPsiSubtree 0 29 36 / 105 = 0.34286 0.00909 ## TweakPsiSegment 0 66 66 / 181 = 0.36464 0.01743 ## TweakPsiPhiSubtree 15 57 62 / 139 = 0.44604 0.01137 ## TweakPsiPhiSegment 12 48 47 / 121 = 0.38843 0.00831 ## TweakHbondSubtree 1 38 36 / 129 = 0.27907 0.01399 ## TweakHbondSegment 1 34 30 / 122 = 0.24590 0.00725 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 10 7 / 28 = 0.25000 0.00150 ## FixOmega 4 1 1 / 64 = 0.01562 0.00681 ## Backrub 25 33 22 / 100 = 0.22000 0.00274 ## BigBackrub 18 26 19 / 88 = 0.21591 0.00810 ## OneRotamer 0 69 37 / 265 = 0.13962 0.00708 ## ClashingRotamer 0 0 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 93 = 0.07527 0.00649 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 168 = 0.02381 0.02314 ## CloseGap 0 8 8 / 90 = 0.08889 0.00473 ## HealGap 0 2 0 / 92 = 0.00000 0.00000 ## MoveGap 0 4 3 / 81 = 0.03704 0.00763 ## ReduceConstraint 0 1 1 / 112 = 0.00893 0.00339 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 7 / 246 = 0.02846 0.05191 ## InsertFragment 0 7 6 / 113 = 0.05310 0.00978 ## TwoFragment 0 0 0 / 212 = 0.00000 0.00000 ## CrossOver 2 3 2 / 69 = 0.02899 0.00568 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 41 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 97 = 0.04124 0.01278 # TweakPhi removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)M463 # TweakPhi removed gap before (T0547)R173 # TweakPsiSubtree removed gap before (T0547)D469 # TweakPsiSubtree removed gap before (T0547)K219 # TweakPsiPhi removed gap before (T0547)L358 # TweakPsiSubtree removed gap before (T0547)S381 # TweakPhi removed gap before (T0547)K76 # TweakPsiSubtree removed gap before (T0547)P52 # TweakPsiSubtree removed gap before (T0547)H53 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPhi removed gap before (T0547)N528 # TweakPsiPhi removed gap before (T0547)V35 # TweakPsiPhi removed gap before (T0547)T473 # TweakPsiSubtree removed gap before (T0547)L47 # TweakPhi removed gap before (T0547)E225 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPhi removed gap before (T0547)L271 # Closed gap before (T0547)L593 # TweakPsiSubtree removed gap before (T0547)K506 # TweakPsiPhi removed gap before (T0547)I241 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)E507 # TweakPhi removed gap before (T0547)F14 # Closed gap before (T0547)L593 # generation 39: best score out of 20: T0547.try1-opt1-scwrl 195.73372 cost/residue, 1219 clashes 0.17573 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 28 27 / 99 = 0.27273 0.01094 ## JiggleSubtree 0 11 11 / 83 = 0.13253 0.01037 ## JiggleSegment 0 20 20 / 146 = 0.13699 0.01338 ## OptSubtree 0 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 2 1 / 59 = 0.01695 0.00364 ## OptAllSegments 0 0 0 / 55 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 81 = 0.01235 0.00650 ## ShiftSegment 0 1 2 / 170 = 0.01176 0.03306 ## TweakPhiSubtree 4 45 36 / 115 = 0.31304 0.00959 ## TweakPhiSegment 3 54 52 / 143 = 0.36364 0.01079 ## TweakPsiSubtree 0 33 40 / 113 = 0.35398 0.00924 ## TweakPsiSegment 0 68 68 / 184 = 0.36957 0.01744 ## TweakPsiPhiSubtree 15 58 63 / 142 = 0.44366 0.01147 ## TweakPsiPhiSegment 12 48 47 / 122 = 0.38525 0.00824 ## TweakHbondSubtree 1 40 39 / 133 = 0.29323 0.01430 ## TweakHbondSegment 1 35 31 / 126 = 0.24603 0.00703 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 10 7 / 28 = 0.25000 0.00150 ## FixOmega 4 2 2 / 65 = 0.03077 0.00674 ## Backrub 26 33 23 / 102 = 0.22549 0.00283 ## BigBackrub 18 27 20 / 90 = 0.22222 0.00865 ## OneRotamer 0 70 38 / 273 = 0.13919 0.00700 ## ClashingRotamer 0 0 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 95 = 0.07368 0.00636 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 172 = 0.02326 0.02260 ## CloseGap 0 8 8 / 95 = 0.08421 0.00449 ## HealGap 0 2 0 / 92 = 0.00000 0.00000 ## MoveGap 0 4 3 / 83 = 0.03614 0.00744 ## ReduceConstraint 0 1 1 / 113 = 0.00885 0.00336 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 254 = 0.03150 0.05088 ## InsertFragment 0 7 6 / 119 = 0.05042 0.00929 ## TwoFragment 0 0 0 / 215 = 0.00000 0.00000 ## CrossOver 2 3 2 / 72 = 0.02778 0.00545 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 41 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 97 = 0.04124 0.01278 # TweakPsiPhi removed gap before (T0547)K304 # TweakPsiSubtree removed gap before (T0547)I359 # TweakPsiSubtree removed gap before (T0547)P52 # TweakPsiPhi removed gap before (T0547)A81 # TweakPhi removed gap before (T0547)R50 # TweakPsiPhi removed gap before (T0547)M450 # TweakPsiPhi removed gap before (T0547)I32 # TweakPhi removed gap before (T0547)V436 # TweakPhi removed gap before (T0547)L224 # TweakPsiPhi removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)F324 # TweakPsiPhi removed gap before (T0547)I34 # TweakPhi removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)P451 # TweakPsiPhi removed gap before (T0547)Y295 # TweakPhi removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)G150 # TweakPhi removed gap before (T0547)I23 # TweakPsiPhi removed gap before (T0547)Y565 # TweakPsiPhi removed gap before (T0547)E148 # TweakPsiPhi removed gap before (T0547)L332 # TweakPsiSubtree removed gap before (T0547)L375 # TweakPsiSubtree removed gap before (T0547)D3 # TweakPsiPhi removed gap before (T0547)L394 # TweakPsiSubtree removed gap before (T0547)E278 # TweakPsiSubtree removed gap before (T0547)N221 # TweakPhi removed gap before (T0547)E60 # generation 40: best score out of 20: T0547.try1-opt1-scwrl 195.72073 cost/residue, 1218 clashes 0.17648 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 29 28 / 101 = 0.27723 0.01101 ## JiggleSubtree 0 12 12 / 91 = 0.13187 0.00960 ## JiggleSegment 0 20 20 / 148 = 0.13514 0.01320 ## OptSubtree 0 0 0 / 37 = 0.00000 0.00000 ## OptSegment 0 2 1 / 59 = 0.01695 0.00364 ## OptAllSegments 0 0 0 / 56 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 82 = 0.01220 0.00642 ## ShiftSegment 0 1 2 / 171 = 0.01170 0.03287 ## TweakPhiSubtree 4 48 38 / 123 = 0.30894 0.00923 ## TweakPhiSegment 3 54 52 / 144 = 0.36111 0.01071 ## TweakPsiSubtree 0 34 41 / 119 = 0.34454 0.00878 ## TweakPsiSegment 0 70 70 / 186 = 0.37634 0.01771 ## TweakPsiPhiSubtree 15 59 64 / 148 = 0.43243 0.01115 ## TweakPsiPhiSegment 12 52 49 / 128 = 0.38281 0.00792 ## TweakHbondSubtree 2 41 39 / 142 = 0.27465 0.01340 ## TweakHbondSegment 1 36 32 / 127 = 0.25197 0.00702 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 11 7 / 31 = 0.22581 0.00135 ## FixOmega 4 2 2 / 66 = 0.03030 0.00663 ## Backrub 26 33 24 / 104 = 0.23077 0.00285 ## BigBackrub 18 27 20 / 91 = 0.21978 0.00856 ## OneRotamer 0 71 39 / 280 = 0.13929 0.00685 ## ClashingRotamer 0 0 0 / 39 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 96 = 0.07292 0.00629 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 173 = 0.02312 0.02247 ## CloseGap 0 8 8 / 98 = 0.08163 0.00435 ## HealGap 0 2 0 / 93 = 0.00000 0.00000 ## MoveGap 0 4 3 / 86 = 0.03488 0.00718 ## ReduceConstraint 0 1 1 / 116 = 0.00862 0.00327 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 262 = 0.03053 0.04932 ## InsertFragment 0 7 6 / 121 = 0.04959 0.00914 ## TwoFragment 0 0 0 / 216 = 0.00000 0.00000 ## CrossOver 2 3 2 / 74 = 0.02703 0.00530 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 42 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 101 = 0.03960 0.01227 # TweakPhi removed gap before (T0547)R183 # TweakPsiPhi removed gap before (T0547)N123 # TweakPsiPhi removed gap before (T0547)R467 # TweakPsiPhi removed gap before (T0547)R70 # TweakPsiSubtree removed gap before (T0547)A121 # TweakPhi removed gap before (T0547)Q58 # TweakPsiPhi removed gap before (T0547)Y63 # TweakPsiPhi removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)I23 # TweakPhi removed gap before (T0547)I573 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)V611 # TweakPhi removed gap before (T0547)E435 # TweakPsiSubtree removed gap before (T0547)L211 # TweakPsiPhi removed gap before (T0547)A427 # TweakPsiSubtree removed gap before (T0547)E505 # TweakPsiSubtree removed gap before (T0547)G235 # TweakPsiPhi removed gap before (T0547)H379 # TweakPhi removed gap before (T0547)F498 # TweakPsiSubtree removed gap before (T0547)F51 # TweakPsiPhi removed gap before (T0547)N575 # TweakPsiSubtree removed gap before (T0547)P315 # TweakPhi removed gap before (T0547)S581 # generation 41: best score out of 20: T0547.try1-opt1-scwrl 194.94691 cost/residue, 1201 clashes 0.16334 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 29 28 / 103 = 0.27184 0.01079 ## JiggleSubtree 0 12 12 / 93 = 0.12903 0.00940 ## JiggleSegment 0 20 20 / 154 = 0.12987 0.01269 ## OptSubtree 0 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 2 1 / 61 = 0.01639 0.00353 ## OptAllSegments 0 0 0 / 59 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 83 = 0.01205 0.00635 ## ShiftSegment 0 1 2 / 174 = 0.01149 0.03230 ## TweakPhiSubtree 4 51 40 / 129 = 0.31008 0.00924 ## TweakPhiSegment 3 55 52 / 145 = 0.35862 0.01064 ## TweakPsiSubtree 0 34 41 / 122 = 0.33607 0.00856 ## TweakPsiSegment 0 70 70 / 191 = 0.36649 0.01725 ## TweakPsiPhiSubtree 15 60 65 / 153 = 0.42484 0.01091 ## TweakPsiPhiSegment 13 53 49 / 131 = 0.37405 0.00774 ## TweakHbondSubtree 2 42 41 / 147 = 0.27891 0.01324 ## TweakHbondSegment 1 39 35 / 131 = 0.26718 0.00876 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 11 7 / 32 = 0.21875 0.00131 ## FixOmega 5 2 2 / 68 = 0.02941 0.00644 ## Backrub 26 34 25 / 105 = 0.23810 0.00289 ## BigBackrub 18 27 20 / 93 = 0.21505 0.00837 ## OneRotamer 0 72 40 / 290 = 0.13793 0.00766 ## ClashingRotamer 0 0 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 96 = 0.07292 0.00629 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 174 = 0.02299 0.02234 ## CloseGap 0 9 9 / 102 = 0.08824 0.01176 ## HealGap 0 2 0 / 93 = 0.00000 0.00000 ## MoveGap 0 4 3 / 90 = 0.03333 0.00686 ## ReduceConstraint 0 1 1 / 120 = 0.00833 0.00316 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 266 = 0.03008 0.04858 ## InsertFragment 0 7 6 / 125 = 0.04800 0.00884 ## TwoFragment 0 0 0 / 219 = 0.00000 0.00000 ## CrossOver 2 3 2 / 75 = 0.02667 0.00523 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 42 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 102 = 0.03922 0.01215 # TweakPsiSubtree removed gap before (T0547)N24 # TweakPsiSubtree removed gap before (T0547)K286 # TweakPsiSubtree removed gap before (T0547)G190 # TweakPhi removed gap before (T0547)E488 # TweakPsiPhi removed gap before (T0547)V94 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)H410 # TweakPsiPhi removed gap before (T0547)K310 # TweakPsiPhi removed gap before (T0547)T409 # TweakPhi removed gap before (T0547)G604 # Closed gap before (T0547)I200 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)K493 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPsiPhi removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)G92 # TweakPsiPhi removed gap before (T0547)E285 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)L375 # TweakPhi removed gap before (T0547)G273 # TweakPhi removed gap before (T0547)Q458 # TweakPsiSubtree removed gap before (T0547)N80 # generation 42: best score out of 20: T0547.try1-opt1-scwrl 194.90111 cost/residue, 1197 clashes 0.16332 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 29 29 / 105 = 0.27619 0.01059 ## JiggleSubtree 0 13 12 / 99 = 0.12121 0.00883 ## JiggleSegment 0 23 23 / 162 = 0.14198 0.01367 ## OptSubtree 0 0 0 / 39 = 0.00000 0.00000 ## OptSegment 0 2 1 / 64 = 0.01562 0.00336 ## OptAllSegments 0 0 0 / 61 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 85 = 0.01176 0.00620 ## ShiftSegment 0 1 2 / 176 = 0.01136 0.03194 ## TweakPhiSubtree 4 51 40 / 131 = 0.30534 0.00910 ## TweakPhiSegment 3 56 52 / 147 = 0.35374 0.01050 ## TweakPsiSubtree 0 35 41 / 124 = 0.33065 0.00843 ## TweakPsiSegment 0 75 72 / 200 = 0.36000 0.01812 ## TweakPsiPhiSubtree 17 61 66 / 157 = 0.42038 0.01072 ## TweakPsiPhiSegment 13 53 50 / 133 = 0.37594 0.00778 ## TweakHbondSubtree 2 43 42 / 152 = 0.27632 0.01311 ## TweakHbondSegment 1 39 35 / 135 = 0.25926 0.00850 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 11 7 / 33 = 0.21212 0.00127 ## FixOmega 5 2 2 / 69 = 0.02899 0.00635 ## Backrub 27 34 25 / 105 = 0.23810 0.00289 ## BigBackrub 18 27 21 / 95 = 0.22105 0.00824 ## OneRotamer 0 76 42 / 300 = 0.14000 0.00753 ## ClashingRotamer 0 0 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 97 = 0.07216 0.00623 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 175 = 0.02286 0.02221 ## CloseGap 0 10 9 / 109 = 0.08257 0.01101 ## HealGap 0 2 0 / 94 = 0.00000 0.00000 ## MoveGap 0 4 3 / 92 = 0.03261 0.00671 ## ReduceConstraint 0 1 1 / 121 = 0.00826 0.00314 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 266 = 0.03008 0.04858 ## InsertFragment 0 7 6 / 131 = 0.04580 0.00844 ## TwoFragment 0 0 0 / 222 = 0.00000 0.00000 ## CrossOver 2 3 2 / 78 = 0.02564 0.00503 ## DoubleCross 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 42 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 103 = 0.03883 0.01203 # TweakPsiPhi removed gap before (T0547)Y90 # TweakPsiSubtree removed gap before (T0547)F599 # TweakPsiPhi removed gap before (T0547)G111 # TweakPhi removed gap before (T0547)T531 # TweakPhi removed gap before (T0547)D434 # TweakPsiSubtree removed gap before (T0547)K543 # TweakPsiSubtree removed gap before (T0547)G604 # TweakPsiPhi removed gap before (T0547)H532 # TweakPsiPhi removed gap before (T0547)I417 # TweakPsiPhi removed gap before (T0547)R50 # TweakPsiPhi removed gap before (T0547)I412 # TweakPhi removed gap before (T0547)G181 # TweakPhi removed gap before (T0547)L419 # TweakPsiPhi removed gap before (T0547)I153 # TweakPsiSubtree removed gap before (T0547)N96 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I15 # TweakPsiSubtree removed gap before (T0547)F144 # generation 43: best score out of 20: T0547.try1-opt1-scwrl 194.82832 cost/residue, 1195 clashes 0.16418 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 30 30 / 108 = 0.27778 0.01050 ## JiggleSubtree 0 15 14 / 107 = 0.13084 0.00937 ## JiggleSegment 0 25 24 / 167 = 0.14371 0.01351 ## OptSubtree 0 0 0 / 39 = 0.00000 0.00000 ## OptSegment 0 2 1 / 67 = 0.01493 0.00321 ## OptAllSegments 0 0 0 / 61 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 85 = 0.01176 0.00620 ## ShiftSegment 0 1 2 / 178 = 0.01124 0.03158 ## TweakPhiSubtree 4 54 42 / 136 = 0.30882 0.00897 ## TweakPhiSegment 3 57 52 / 149 = 0.34899 0.01035 ## TweakPsiSubtree 0 35 41 / 127 = 0.32283 0.00823 ## TweakPsiSegment 0 77 72 / 203 = 0.35468 0.01785 ## TweakPsiPhiSubtree 17 62 67 / 162 = 0.41358 0.01084 ## TweakPsiPhiSegment 13 53 51 / 136 = 0.37500 0.00774 ## TweakHbondSubtree 2 44 43 / 154 = 0.27922 0.01310 ## TweakHbondSegment 1 40 36 / 142 = 0.25352 0.00860 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 11 7 / 33 = 0.21212 0.00127 ## FixOmega 5 2 2 / 69 = 0.02899 0.00635 ## Backrub 29 34 26 / 106 = 0.24528 0.00288 ## BigBackrub 18 27 21 / 96 = 0.21875 0.00815 ## OneRotamer 0 76 42 / 306 = 0.13725 0.00738 ## ClashingRotamer 0 0 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 100 = 0.07000 0.00604 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 179 = 0.02235 0.02171 ## CloseGap 0 12 10 / 116 = 0.08621 0.01048 ## HealGap 0 2 0 / 96 = 0.00000 0.00000 ## MoveGap 0 4 4 / 96 = 0.04167 0.00963 ## ReduceConstraint 0 1 1 / 125 = 0.00800 0.00303 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 273 = 0.02930 0.04734 ## InsertFragment 0 7 6 / 133 = 0.04511 0.00831 ## TwoFragment 0 0 0 / 229 = 0.00000 0.00000 ## CrossOver 2 3 2 / 78 = 0.02564 0.00503 ## DoubleCross 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 42 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 104 = 0.03846 0.01192 # TweakPhi removed gap before (T0547)K68 # TweakPsiSubtree removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)K246 # TweakPsiPhi removed gap before (T0547)F453 # TweakPhi removed gap before (T0547)N65 # TweakPsiPhi removed gap before (T0547)L275 # TweakPsiPhi removed gap before (T0547)L218 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)E386 # TweakPhi removed gap before (T0547)H500 # TweakPsiSubtree removed gap before (T0547)Q554 # Closed gap before (T0547)I200 # TweakPhi removed gap before (T0547)E435 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPsiSubtree removed gap before (T0547)S202 # TweakPsiSubtree removed gap before (T0547)R259 # TweakPsiPhi removed gap before (T0547)G604 # TweakPsiPhi removed gap before (T0547)I6 # TweakPsiPhi removed gap before (T0547)R288 # TweakPsiPhi removed gap before (T0547)I578 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K44 # TweakPsiPhi removed gap before (T0547)V98 # TweakPhi removed gap before (T0547)Y255 # TweakPsiSubtree removed gap before (T0547)L217 # TweakPhi removed gap before (T0547)A147 # TweakPsiPhi removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)Y440 # generation 44: best score out of 20: T0547.try1-opt1-scwrl 194.62427 cost/residue, 1194 clashes 0.16344 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 30 30 / 112 = 0.26786 0.01013 ## JiggleSubtree 0 15 14 / 110 = 0.12727 0.00912 ## JiggleSegment 0 25 25 / 171 = 0.14620 0.01343 ## OptSubtree 0 0 0 / 39 = 0.00000 0.00000 ## OptSegment 0 2 1 / 69 = 0.01449 0.00312 ## OptAllSegments 0 0 0 / 62 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 85 = 0.01176 0.00620 ## ShiftSegment 0 1 2 / 181 = 0.01105 0.03105 ## TweakPhiSubtree 4 55 43 / 138 = 0.31159 0.01066 ## TweakPhiSegment 3 60 53 / 153 = 0.34641 0.01011 ## TweakPsiSubtree 0 36 42 / 129 = 0.32558 0.00812 ## TweakPsiSegment 0 81 76 / 211 = 0.36019 0.01802 ## TweakPsiPhiSubtree 19 63 68 / 166 = 0.40964 0.01061 ## TweakPsiPhiSegment 14 54 52 / 141 = 0.36879 0.00762 ## TweakHbondSubtree 2 44 44 / 158 = 0.27848 0.01278 ## TweakHbondSegment 1 40 36 / 145 = 0.24828 0.00842 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 11 7 / 33 = 0.21212 0.00127 ## FixOmega 5 2 2 / 71 = 0.02817 0.00617 ## Backrub 30 35 26 / 107 = 0.24299 0.00285 ## BigBackrub 19 28 22 / 102 = 0.21569 0.00807 ## OneRotamer 0 79 45 / 316 = 0.14241 0.00732 ## ClashingRotamer 0 0 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 101 = 0.06931 0.00598 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 181 = 0.02210 0.02147 ## CloseGap 0 13 11 / 124 = 0.08871 0.01056 ## HealGap 0 2 0 / 96 = 0.00000 0.00000 ## MoveGap 0 4 4 / 99 = 0.04040 0.00934 ## ReduceConstraint 0 1 1 / 126 = 0.00794 0.00301 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 281 = 0.02847 0.04599 ## InsertFragment 0 7 6 / 135 = 0.04444 0.00819 ## TwoFragment 0 0 0 / 234 = 0.00000 0.00000 ## CrossOver 2 3 2 / 78 = 0.02564 0.00503 ## DoubleCross 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 42 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 105 = 0.03810 0.01180 # TweakPhi removed gap before (T0547)I578 # TweakPsiSubtree removed gap before (T0547)D501 # TweakPhi removed gap before (T0547)I167 # TweakPsiSubtree removed gap before (T0547)F282 # TweakPhi removed gap before (T0547)N284 # TweakPsiPhi removed gap before (T0547)Y366 # TweakPsiSubtree removed gap before (T0547)D503 # TweakPhi removed gap before (T0547)D383 # TweakPsiSubtree removed gap before (T0547)E314 # TweakPhi removed gap before (T0547)D602 # TweakPsiSubtree removed gap before (T0547)A374 # TweakPsiPhi removed gap before (T0547)Y363 # TweakPsiSubtree removed gap before (T0547)D316 # TweakPhi removed gap before (T0547)V522 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPhi removed gap before (T0547)F51 # TweakPsiSubtree removed gap before (T0547)I212 # TweakPsiPhi removed gap before (T0547)I238 # TweakPsiSubtree removed gap before (T0547)D434 # TweakPsiPhi removed gap before (T0547)S403 # TweakPsiPhi removed gap before (T0547)Y90 # TweakPsiPhi removed gap before (T0547)A374 # TweakPsiSubtree removed gap before (T0547)I538 # TweakPhi removed gap before (T0547)E552 # TweakPsiSubtree removed gap before (T0547)W454 # TweakPsiSubtree removed gap before (T0547)V397 # TweakPsiPhi removed gap before (T0547)G272 # TweakPhi removed gap before (T0547)D484 # TweakPsiSubtree removed gap before (T0547)I540 # generation 45: best score out of 20: T0547.try1-opt1-scwrl 194.51773 cost/residue, 1187 clashes 0.16288 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 30 30 / 112 = 0.26786 0.01013 ## JiggleSubtree 0 15 14 / 116 = 0.12069 0.00864 ## JiggleSegment 0 26 26 / 180 = 0.14444 0.01300 ## OptSubtree 0 0 0 / 40 = 0.00000 0.00000 ## OptSegment 0 2 1 / 71 = 0.01408 0.00303 ## OptAllSegments 0 0 0 / 63 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 85 = 0.01176 0.00620 ## ShiftSegment 0 1 2 / 182 = 0.01099 0.03088 ## TweakPhiSubtree 5 57 45 / 144 = 0.31250 0.01054 ## TweakPhiSegment 3 62 54 / 156 = 0.34615 0.01007 ## TweakPsiSubtree 0 37 43 / 133 = 0.32331 0.00819 ## TweakPsiSegment 0 84 78 / 221 = 0.35294 0.01769 ## TweakPsiPhiSubtree 19 64 69 / 169 = 0.40828 0.01075 ## TweakPsiPhiSegment 14 56 53 / 145 = 0.36552 0.00750 ## TweakHbondSubtree 2 44 45 / 164 = 0.27439 0.01251 ## TweakHbondSegment 1 42 38 / 150 = 0.25333 0.00830 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 11 7 / 33 = 0.21212 0.00127 ## FixOmega 5 2 2 / 71 = 0.02817 0.00617 ## Backrub 30 35 27 / 108 = 0.25000 0.00283 ## BigBackrub 19 29 23 / 105 = 0.21905 0.00795 ## OneRotamer 0 80 46 / 321 = 0.14330 0.00737 ## ClashingRotamer 0 0 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 102 = 0.06863 0.00592 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 185 = 0.02162 0.02101 ## CloseGap 0 13 11 / 131 = 0.08397 0.00999 ## HealGap 0 2 0 / 97 = 0.00000 0.00000 ## MoveGap 0 4 4 / 107 = 0.03738 0.00864 ## ReduceConstraint 0 1 1 / 126 = 0.00794 0.00301 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 285 = 0.02807 0.04534 ## InsertFragment 0 7 6 / 136 = 0.04412 0.00813 ## TwoFragment 0 0 0 / 235 = 0.00000 0.00000 ## CrossOver 2 3 2 / 79 = 0.02532 0.00496 ## DoubleCross 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 42 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 107 = 0.03738 0.01158 # TweakPhi removed gap before (T0547)F301 # TweakPhi removed gap before (T0547)E162 # TweakPhi removed gap before (T0547)N603 # TweakPsiSubtree removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)V611 # TweakPhi removed gap before (T0547)E576 # TweakPsiSubtree removed gap before (T0547)E576 # TweakPhi removed gap before (T0547)M463 # TweakPsiSubtree removed gap before (T0547)V300 # TweakPhi removed gap before (T0547)I32 # TweakPsiSubtree removed gap before (T0547)V516 # TweakPsiSubtree removed gap before (T0547)A189 # TweakPhi removed gap before (T0547)D503 # TweakPhi removed gap before (T0547)G610 # TweakPsiPhi removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)Y83 # TweakPhi removed gap before (T0547)D494 # TweakPhi removed gap before (T0547)L206 # TweakPsiSubtree removed gap before (T0547)D312 # TweakPsiSubtree removed gap before (T0547)D558 # TweakPhi removed gap before (T0547)A569 # TweakPhi removed gap before (T0547)R50 # TweakPhi removed gap before (T0547)L244 # TweakPsiSubtree removed gap before (T0547)L38 # TweakPsiSubtree removed gap before (T0547)C22 # TweakPsiPhi removed gap before (T0547)Y396 # TweakPhi removed gap before (T0547)N88 # TweakPsiPhi removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)N24 # TweakPhi removed gap before (T0547)L182 # TweakPsiPhi removed gap before (T0547)G190 # generation 46: best score out of 20: T0547.try1-opt1-scwrl 194.46309 cost/residue, 1182 clashes 0.16281 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 33 30 / 117 = 0.25641 0.00969 ## JiggleSubtree 0 15 14 / 119 = 0.11765 0.00843 ## JiggleSegment 0 26 29 / 191 = 0.15183 0.01330 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 2 1 / 72 = 0.01389 0.00299 ## OptAllSegments 0 0 0 / 63 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 86 = 0.01163 0.00612 ## ShiftSegment 0 1 2 / 182 = 0.01099 0.03088 ## TweakPhiSubtree 5 58 48 / 155 = 0.30968 0.01009 ## TweakPhiSegment 4 64 56 / 160 = 0.35000 0.01027 ## TweakPsiSubtree 0 38 44 / 139 = 0.31655 0.00812 ## TweakPsiSegment 0 86 82 / 229 = 0.35808 0.01784 ## TweakPsiPhiSubtree 20 64 71 / 174 = 0.40805 0.01058 ## TweakPsiPhiSegment 14 57 53 / 146 = 0.36301 0.00745 ## TweakHbondSubtree 2 46 47 / 168 = 0.27976 0.01225 ## TweakHbondSegment 1 44 40 / 153 = 0.26144 0.00833 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 11 8 / 34 = 0.23529 0.00237 ## FixOmega 5 2 2 / 75 = 0.02667 0.00584 ## Backrub 30 36 27 / 112 = 0.24107 0.00273 ## BigBackrub 19 29 23 / 105 = 0.21905 0.00795 ## OneRotamer 0 80 46 / 324 = 0.14198 0.00730 ## ClashingRotamer 0 0 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 103 = 0.06796 0.00586 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 187 = 0.02139 0.02078 ## CloseGap 0 14 12 / 135 = 0.08889 0.01039 ## HealGap 0 2 0 / 98 = 0.00000 0.00000 ## MoveGap 0 4 4 / 110 = 0.03636 0.00841 ## ReduceConstraint 0 1 1 / 126 = 0.00794 0.00301 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 50 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 288 = 0.02778 0.04487 ## InsertFragment 0 7 6 / 139 = 0.04317 0.00795 ## TwoFragment 0 0 0 / 236 = 0.00000 0.00000 ## CrossOver 3 3 2 / 79 = 0.02532 0.00496 ## DoubleCross 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 43 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 111 = 0.03604 0.01117 # TweakPsiPhi removed gap before (T0547)L563 # TweakPsiPhi removed gap before (T0547)H233 # TweakPhi removed gap before (T0547)I333 # TweakPsiSubtree removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)I537 # TweakPhi removed gap before (T0547)H187 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L511 # TweakPsiPhi removed gap before (T0547)E346 # TweakPsiSubtree removed gap before (T0547)V611 # TweakPhi removed gap before (T0547)V397 # TweakPhi removed gap before (T0547)I6 # TweakPsiPhi removed gap before (T0547)R183 # TweakPhi removed gap before (T0547)S387 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I145 # TweakPsiPhi removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)N355 # TweakPsiSubtree removed gap before (T0547)M261 # TweakPsiPhi removed gap before (T0547)R474 # TweakPhi removed gap before (T0547)G395 # TweakPsiPhi removed gap before (T0547)G512 # TweakPsiPhi removed gap before (T0547)N179 # TweakPhi removed gap before (T0547)G272 # TweakPsiSubtree removed gap before (T0547)L108 # TweakPsiSubtree removed gap before (T0547)Y565 # TweakPhi removed gap before (T0547)E158 # TweakPhi removed gap before (T0547)I359 # TweakPhi removed gap before (T0547)L108 # TweakPhi removed gap before (T0547)A268 # TweakPhi removed gap before (T0547)A147 # TweakPsiPhi removed gap before (T0547)I269 # TweakPsiSubtree removed gap before (T0547)Y25 # TweakPhi removed gap before (T0547)L47 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPsiPhi removed gap before (T0547)L182 # generation 47: best score out of 20: T0547.try1-opt1-scwrl 194.41016 cost/residue, 1202 clashes 0.16217 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 33 30 / 119 = 0.25210 0.00953 ## JiggleSubtree 0 15 14 / 123 = 0.11382 0.00815 ## JiggleSegment 0 27 30 / 196 = 0.15306 0.01317 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 2 1 / 72 = 0.01389 0.00299 ## OptAllSegments 0 0 0 / 64 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 86 = 0.01163 0.00612 ## ShiftSegment 0 1 2 / 184 = 0.01087 0.03055 ## TweakPhiSubtree 5 63 52 / 166 = 0.31325 0.00997 ## TweakPhiSegment 4 65 56 / 165 = 0.33939 0.00996 ## TweakPsiSubtree 0 39 45 / 143 = 0.31469 0.00880 ## TweakPsiSegment 0 87 84 / 233 = 0.36052 0.01765 ## TweakPsiPhiSubtree 20 65 72 / 182 = 0.39560 0.01012 ## TweakPsiPhiSegment 15 58 54 / 149 = 0.36242 0.00733 ## TweakHbondSubtree 2 48 49 / 171 = 0.28655 0.01206 ## TweakHbondSegment 1 44 40 / 157 = 0.25478 0.00812 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 12 9 / 38 = 0.23684 0.00216 ## FixOmega 5 2 2 / 78 = 0.02564 0.00561 ## Backrub 31 37 27 / 115 = 0.23478 0.00266 ## BigBackrub 21 30 23 / 109 = 0.21101 0.00766 ## OneRotamer 0 80 47 / 329 = 0.14286 0.00724 ## ClashingRotamer 0 0 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 10 7 7 / 104 = 0.06731 0.00581 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 188 = 0.02128 0.02067 ## CloseGap 0 14 12 / 140 = 0.08571 0.01002 ## HealGap 0 2 0 / 101 = 0.00000 0.00000 ## MoveGap 0 4 4 / 111 = 0.03604 0.00833 ## ReduceConstraint 0 1 1 / 127 = 0.00787 0.00299 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 295 = 0.02712 0.04381 ## InsertFragment 0 7 6 / 140 = 0.04286 0.00790 ## TwoFragment 0 0 0 / 239 = 0.00000 0.00000 ## CrossOver 3 3 2 / 79 = 0.02532 0.00496 ## DoubleCross 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 43 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 112 = 0.03571 0.01107 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)P176 # TweakPsiSubtree removed gap before (T0547)D380 # TweakPhi removed gap before (T0547)K607 # TweakPsiPhi removed gap before (T0547)K582 # TweakPsiSubtree removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)Y363 # TweakPsiSubtree removed gap before (T0547)Q424 # TweakPsiSubtree removed gap before (T0547)D103 # TweakPhi removed gap before (T0547)V299 # TweakPhi removed gap before (T0547)K27 # TweakPhi removed gap before (T0547)A30 # TweakPsiPhi removed gap before (T0547)E320 # TweakPsiPhi removed gap before (T0547)R467 # TweakPsiSubtree removed gap before (T0547)K171 # TweakPsiSubtree removed gap before (T0547)K20 # TweakPhi removed gap before (T0547)S445 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPsiSubtree removed gap before (T0547)P472 # TweakPsiSubtree removed gap before (T0547)N80 # TweakPhi removed gap before (T0547)D422 # TweakPsiSubtree removed gap before (T0547)K175 # TweakPsiPhi removed gap before (T0547)S280 # TweakPhi removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)L224 # TweakPsiPhi removed gap before (T0547)S387 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPhi removed gap before (T0547)G235 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPsiPhi removed gap before (T0547)A327 # TweakPsiSubtree removed gap before (T0547)S188 # TweakPsiPhi removed gap before (T0547)E595 # TweakPsiPhi removed gap before (T0547)T154 # generation 48: best score out of 20: T0547.try1-opt1-scwrl 194.36778 cost/residue, 1186 clashes 0.16305 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 34 32 / 122 = 0.26230 0.00949 ## JiggleSubtree 0 15 15 / 126 = 0.11905 0.00816 ## JiggleSegment 0 27 30 / 204 = 0.14706 0.01266 ## OptSubtree 0 0 0 / 42 = 0.00000 0.00000 ## OptSegment 0 2 1 / 72 = 0.01389 0.00299 ## OptAllSegments 0 0 0 / 65 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 87 = 0.01149 0.00605 ## ShiftSegment 0 1 2 / 185 = 0.01081 0.03038 ## TweakPhiSubtree 5 66 56 / 173 = 0.32370 0.01012 ## TweakPhiSegment 5 65 56 / 167 = 0.33533 0.00984 ## TweakPsiSubtree 0 41 46 / 146 = 0.31507 0.00863 ## TweakPsiSegment 0 90 89 / 245 = 0.36327 0.01738 ## TweakPsiPhiSubtree 20 65 73 / 186 = 0.39247 0.00996 ## TweakPsiPhiSegment 15 60 55 / 154 = 0.35714 0.00718 ## TweakHbondSubtree 2 50 50 / 176 = 0.28409 0.01179 ## TweakHbondSegment 1 45 41 / 161 = 0.25466 0.00821 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 12 9 / 39 = 0.23077 0.00211 ## FixOmega 5 2 2 / 78 = 0.02564 0.00561 ## Backrub 31 38 28 / 118 = 0.23729 0.00286 ## BigBackrub 22 31 23 / 110 = 0.20909 0.00759 ## OneRotamer 0 80 47 / 333 = 0.14114 0.00715 ## ClashingRotamer 0 1 1 / 44 = 0.02273 0.00090 ## ClusteredRotamer 11 7 7 / 104 = 0.06731 0.00581 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 190 = 0.02105 0.02046 ## CloseGap 0 15 12 / 146 = 0.08219 0.00961 ## HealGap 0 2 0 / 101 = 0.00000 0.00000 ## MoveGap 0 4 4 / 116 = 0.03448 0.00797 ## ReduceConstraint 0 1 1 / 128 = 0.00781 0.00296 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 298 = 0.02685 0.04337 ## InsertFragment 0 7 6 / 144 = 0.04167 0.00768 ## TwoFragment 0 0 0 / 242 = 0.00000 0.00000 ## CrossOver 3 3 2 / 79 = 0.02532 0.00496 ## DoubleCross 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 45 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 115 = 0.03478 0.01078 # TweakPhi removed gap before (T0547)W9 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N355 # TweakPhi removed gap before (T0547)N221 # TweakPsiSubtree removed gap before (T0547)Q342 # TweakPsiSubtree removed gap before (T0547)R173 # TweakPsiPhi removed gap before (T0547)L523 # TweakPhi removed gap before (T0547)H53 # TweakPhi removed gap before (T0547)W479 # TweakPhi removed gap before (T0547)R70 # TweakPsiPhi removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)I333 # TweakPsiSubtree removed gap before (T0547)L266 # TweakPsiPhi removed gap before (T0547)I350 # TweakPsiSubtree removed gap before (T0547)Q226 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPsiPhi removed gap before (T0547)L583 # TweakPsiSubtree removed gap before (T0547)E12 # TweakPsiPhi removed gap before (T0547)L523 # TweakPsiPhi removed gap before (T0547)N249 # TweakPsiPhi removed gap before (T0547)N179 # TweakPsiPhi removed gap before (T0547)Q237 # TweakPsiSubtree removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)I241 # TweakPsiPhi removed gap before (T0547)Y104 # generation 49: best score out of 20: T0547.try1-opt1-scwrl 194.30495 cost/residue, 1183 clashes 0.16288 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 34 32 / 127 = 0.25197 0.00912 ## JiggleSubtree 0 15 15 / 131 = 0.11450 0.00785 ## JiggleSegment 0 27 30 / 210 = 0.14286 0.01230 ## OptSubtree 0 0 0 / 42 = 0.00000 0.00000 ## OptSegment 0 2 1 / 72 = 0.01389 0.00299 ## OptAllSegments 0 0 0 / 66 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 87 = 0.01149 0.00605 ## ShiftSegment 0 1 2 / 185 = 0.01081 0.03038 ## TweakPhiSubtree 5 68 57 / 177 = 0.32203 0.01025 ## TweakPhiSegment 6 66 57 / 170 = 0.33529 0.00976 ## TweakPsiSubtree 0 42 48 / 151 = 0.31788 0.00867 ## TweakPsiSegment 0 90 90 / 250 = 0.36000 0.01703 ## TweakPsiPhiSubtree 20 65 74 / 188 = 0.39362 0.00991 ## TweakPsiPhiSegment 15 64 59 / 161 = 0.36646 0.00725 ## TweakHbondSubtree 2 55 52 / 184 = 0.28261 0.01134 ## TweakHbondSegment 1 47 42 / 171 = 0.24561 0.00778 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 12 9 / 41 = 0.21951 0.00201 ## FixOmega 5 2 2 / 78 = 0.02564 0.00561 ## Backrub 32 39 29 / 119 = 0.24370 0.00298 ## BigBackrub 22 31 23 / 111 = 0.20721 0.00752 ## OneRotamer 0 81 48 / 340 = 0.14118 0.00706 ## ClashingRotamer 0 1 1 / 50 = 0.02000 0.00079 ## ClusteredRotamer 12 7 7 / 106 = 0.06604 0.00570 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 190 = 0.02105 0.02046 ## CloseGap 0 15 12 / 148 = 0.08108 0.00948 ## HealGap 0 2 0 / 101 = 0.00000 0.00000 ## MoveGap 0 4 4 / 119 = 0.03361 0.00777 ## ReduceConstraint 0 1 1 / 131 = 0.00763 0.00290 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 305 = 0.02623 0.04237 ## InsertFragment 0 7 6 / 147 = 0.04082 0.00752 ## TwoFragment 0 0 0 / 242 = 0.00000 0.00000 ## CrossOver 3 3 2 / 80 = 0.02500 0.00490 ## DoubleCross 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 45 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 116 = 0.03448 0.01069 # TweakPsiPhi removed gap before (T0547)L108 # TweakPhi removed gap before (T0547)V584 # TweakPsiSubtree removed gap before (T0547)S381 # TweakPsiSubtree removed gap before (T0547)I407 # TweakPsiPhi removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)F93 # Closed gap before (T0547)L593 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPsiPhi removed gap before (T0547)R439 # TweakPsiPhi removed gap before (T0547)F513 # TweakPhi removed gap before (T0547)D562 # TweakPsiSubtree removed gap before (T0547)I417 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPhi removed gap before (T0547)G92 # TweakPsiSubtree removed gap before (T0547)H329 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L574 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPhi removed gap before (T0547)S197 # TweakPhi removed gap before (T0547)S236 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)V436 # TweakPsiSubtree removed gap before (T0547)S608 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L399 # generation 50: best score out of 20: T0547.try1-opt1-scwrl 194.23062 cost/residue, 1191 clashes 0.16290 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 35 33 / 130 = 0.25385 0.00895 ## JiggleSubtree 0 15 15 / 137 = 0.10949 0.00751 ## JiggleSegment 0 27 30 / 214 = 0.14019 0.01207 ## OptSubtree 0 0 0 / 42 = 0.00000 0.00000 ## OptSegment 0 2 1 / 74 = 0.01351 0.00291 ## OptAllSegments 0 0 0 / 66 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 90 = 0.01111 0.00585 ## ShiftSegment 0 1 2 / 186 = 0.01075 0.03022 ## TweakPhiSubtree 5 72 59 / 186 = 0.31720 0.00978 ## TweakPhiSegment 6 67 59 / 172 = 0.34302 0.00972 ## TweakPsiSubtree 0 43 48 / 156 = 0.30769 0.00839 ## TweakPsiSegment 0 90 90 / 254 = 0.35433 0.01676 ## TweakPsiPhiSubtree 21 65 74 / 189 = 0.39153 0.00985 ## TweakPsiPhiSegment 15 65 60 / 164 = 0.36585 0.00748 ## TweakHbondSubtree 2 57 54 / 190 = 0.28421 0.01145 ## TweakHbondSegment 1 47 42 / 173 = 0.24277 0.00769 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 13 9 / 43 = 0.20930 0.00191 ## FixOmega 5 2 2 / 81 = 0.02469 0.00541 ## Backrub 33 41 31 / 122 = 0.25410 0.00311 ## BigBackrub 24 31 23 / 113 = 0.20354 0.00739 ## OneRotamer 0 82 49 / 348 = 0.14080 0.00706 ## ClashingRotamer 0 1 1 / 52 = 0.01923 0.00076 ## ClusteredRotamer 12 7 7 / 106 = 0.06604 0.00570 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 195 = 0.02051 0.01993 ## CloseGap 0 16 12 / 150 = 0.08000 0.00935 ## HealGap 0 2 0 / 102 = 0.00000 0.00000 ## MoveGap 0 4 4 / 123 = 0.03252 0.00752 ## ReduceConstraint 0 1 1 / 131 = 0.00763 0.00290 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 52 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 312 = 0.02564 0.04142 ## InsertFragment 0 7 6 / 147 = 0.04082 0.00752 ## TwoFragment 0 0 0 / 247 = 0.00000 0.00000 ## CrossOver 3 3 2 / 80 = 0.02500 0.00490 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 45 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 118 = 0.03390 0.01050 # TweakPsiPhi removed gap before (T0547)T473 # TweakPhi removed gap before (T0547)I388 # TweakPhi removed gap before (T0547)G64 # TweakPsiSubtree removed gap before (T0547)S368 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I169 # TweakPsiSubtree removed gap before (T0547)L515 # TweakPhi removed gap before (T0547)R173 # TweakPsiPhi removed gap before (T0547)N61 # TweakPsiSubtree removed gap before (T0547)L47 # TweakPsiPhi removed gap before (T0547)S403 # TweakPhi removed gap before (T0547)N585 # TweakPsiPhi removed gap before (T0547)K95 # TweakPsiSubtree removed gap before (T0547)H568 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPhi removed gap before (T0547)L420 # TweakPhi removed gap before (T0547)V277 # TweakPhi removed gap before (T0547)V215 # TweakPsiSubtree removed gap before (T0547)S202 # TweakPsiSubtree removed gap before (T0547)L332 # TweakPhi removed gap before (T0547)G262 # TweakPhi removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)N161 # TweakPhi removed gap before (T0547)Q89 # TweakPsiSubtree removed gap before (T0547)L529 # TweakPsiPhi removed gap before (T0547)H532 # TweakPhi removed gap before (T0547)L160 # TweakPhi removed gap before (T0547)I369 # TweakPhi removed gap before (T0547)A127 # TweakPsiPhi removed gap before (T0547)E250 # generation 51: best score out of 20: T0547.try1-opt1-scwrl 193.92281 cost/residue, 1196 clashes 0.16116 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 35 33 / 132 = 0.25000 0.00881 ## JiggleSubtree 0 16 16 / 139 = 0.11511 0.00810 ## JiggleSegment 0 27 31 / 221 = 0.14027 0.01170 ## OptSubtree 0 0 0 / 44 = 0.00000 0.00000 ## OptSegment 0 2 1 / 74 = 0.01351 0.00291 ## OptAllSegments 0 0 0 / 66 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 92 = 0.01087 0.00573 ## ShiftSegment 0 1 2 / 191 = 0.01047 0.02943 ## TweakPhiSubtree 5 77 62 / 193 = 0.32124 0.01062 ## TweakPhiSegment 7 68 60 / 180 = 0.33333 0.00938 ## TweakPsiSubtree 0 46 51 / 162 = 0.31481 0.01056 ## TweakPsiSegment 0 92 92 / 258 = 0.35659 0.01677 ## TweakPsiPhiSubtree 21 66 77 / 193 = 0.39896 0.01000 ## TweakPsiPhiSegment 15 66 60 / 168 = 0.35714 0.00730 ## TweakHbondSubtree 2 57 54 / 192 = 0.28125 0.01134 ## TweakHbondSegment 1 49 45 / 179 = 0.25140 0.00775 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 13 9 / 44 = 0.20455 0.00187 ## FixOmega 5 2 2 / 82 = 0.02439 0.00534 ## Backrub 33 41 32 / 124 = 0.25806 0.00309 ## BigBackrub 25 31 23 / 115 = 0.20000 0.00726 ## OneRotamer 0 83 50 / 356 = 0.14045 0.00694 ## ClashingRotamer 0 1 1 / 53 = 0.01887 0.00075 ## ClusteredRotamer 12 7 7 / 106 = 0.06604 0.00570 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 196 = 0.02041 0.01983 ## CloseGap 0 16 12 / 153 = 0.07843 0.00917 ## HealGap 0 2 0 / 103 = 0.00000 0.00000 ## MoveGap 0 4 4 / 131 = 0.03053 0.00706 ## ReduceConstraint 0 1 1 / 132 = 0.00758 0.00287 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 52 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 313 = 0.02556 0.04129 ## InsertFragment 0 7 6 / 149 = 0.04027 0.00742 ## TwoFragment 0 0 0 / 250 = 0.00000 0.00000 ## CrossOver 3 3 2 / 82 = 0.02439 0.00478 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 45 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 120 = 0.03333 0.01033 # TweakPhi removed gap before (T0547)T390 # TweakPsiSubtree removed gap before (T0547)V98 # TweakPhi removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)G421 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)S608 # TweakPsiSubtree removed gap before (T0547)K526 # TweakPhi removed gap before (T0547)I254 # TweakPsiSubtree removed gap before (T0547)A195 # TweakPsiPhi removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)S403 # TweakPsiPhi removed gap before (T0547)N216 # TweakPsiSubtree removed gap before (T0547)G159 # TweakPsiPhi removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)T473 # TweakPhi removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)N18 # TweakPsiSubtree removed gap before (T0547)E521 # TweakPsiSubtree removed gap before (T0547)I570 # TweakPhi removed gap before (T0547)S112 # TweakPsiPhi removed gap before (T0547)D469 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F498 # TweakPhi removed gap before (T0547)A147 # TweakPsiSubtree removed gap before (T0547)L217 # TweakPhi removed gap before (T0547)K264 # TweakPhi removed gap before (T0547)Q281 # generation 52: best score out of 20: T0547.try1-opt1-scwrl 193.90807 cost/residue, 1196 clashes 0.16116 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 36 33 / 137 = 0.24088 0.00849 ## JiggleSubtree 0 16 16 / 143 = 0.11189 0.00787 ## JiggleSegment 0 28 31 / 226 = 0.13717 0.01144 ## OptSubtree 0 0 0 / 45 = 0.00000 0.00000 ## OptSegment 0 2 1 / 74 = 0.01351 0.00291 ## OptAllSegments 0 0 0 / 67 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 93 = 0.01075 0.00566 ## ShiftSegment 0 1 2 / 192 = 0.01042 0.02928 ## TweakPhiSubtree 5 79 63 / 201 = 0.31343 0.01020 ## TweakPhiSegment 7 69 62 / 183 = 0.33880 0.00933 ## TweakPsiSubtree 0 48 52 / 168 = 0.30952 0.01020 ## TweakPsiSegment 0 93 94 / 265 = 0.35472 0.01648 ## TweakPsiPhiSubtree 22 67 78 / 196 = 0.39796 0.00986 ## TweakPsiPhiSegment 15 66 60 / 169 = 0.35503 0.00726 ## TweakHbondSubtree 2 59 54 / 200 = 0.27000 0.01088 ## TweakHbondSegment 1 51 47 / 184 = 0.25543 0.00763 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 13 9 / 45 = 0.20000 0.00183 ## FixOmega 5 2 2 / 84 = 0.02381 0.00521 ## Backrub 34 42 32 / 128 = 0.25000 0.00299 ## BigBackrub 26 32 24 / 119 = 0.20168 0.00714 ## OneRotamer 0 85 54 / 361 = 0.14958 0.00723 ## ClashingRotamer 0 1 1 / 55 = 0.01818 0.00072 ## ClusteredRotamer 13 7 7 / 106 = 0.06604 0.00570 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 196 = 0.02041 0.01983 ## CloseGap 0 16 12 / 160 = 0.07500 0.00877 ## HealGap 0 2 0 / 104 = 0.00000 0.00000 ## MoveGap 0 4 4 / 135 = 0.02963 0.00685 ## ReduceConstraint 0 1 1 / 132 = 0.00758 0.00287 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 52 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 317 = 0.02524 0.04077 ## InsertFragment 0 7 6 / 150 = 0.04000 0.00737 ## TwoFragment 0 0 0 / 254 = 0.00000 0.00000 ## CrossOver 3 3 2 / 82 = 0.02439 0.00478 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 46 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 121 = 0.03306 0.01024 # TweakPsiPhi removed gap before (T0547)G45 # TweakPsiPhi removed gap before (T0547)L47 # TweakPhi removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)K582 # TweakPhi removed gap before (T0547)I212 # TweakPsiPhi removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)A330 # TweakPsiSubtree removed gap before (T0547)A119 # TweakPsiPhi removed gap before (T0547)E158 # TweakPsiSubtree removed gap before (T0547)E12 # TweakPsiPhi removed gap before (T0547)L332 # TweakPsiPhi removed gap before (T0547)F324 # TweakPhi removed gap before (T0547)K17 # TweakPsiPhi removed gap before (T0547)W454 # TweakPhi removed gap before (T0547)L394 # TweakPhi removed gap before (T0547)L394 # TweakPhi removed gap before (T0547)R50 # TweakPhi removed gap before (T0547)A195 # TweakPsiSubtree removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)I369 # TweakPhi removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)N508 # TweakPsiSubtree removed gap before (T0547)S202 # TweakPsiSubtree removed gap before (T0547)L258 # TweakPsiSubtree removed gap before (T0547)P46 # TweakPhi removed gap before (T0547)S539 # TweakPhi removed gap before (T0547)F599 # TweakPsiSubtree removed gap before (T0547)G198 # TweakPsiSubtree removed gap before (T0547)T482 # generation 53: best score out of 20: T0547.try1-opt1-scwrl 193.75793 cost/residue, 1189 clashes 0.16170 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 36 33 / 140 = 0.23571 0.00831 ## JiggleSubtree 0 16 16 / 147 = 0.10884 0.00766 ## JiggleSegment 0 28 31 / 230 = 0.13478 0.01124 ## OptSubtree 0 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 2 1 / 76 = 0.01316 0.00283 ## OptAllSegments 0 0 0 / 68 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 93 = 0.01075 0.00566 ## ShiftSegment 0 1 2 / 194 = 0.01031 0.02897 ## TweakPhiSubtree 5 81 64 / 207 = 0.30918 0.00996 ## TweakPhiSegment 7 71 64 / 189 = 0.33862 0.00935 ## TweakPsiSubtree 0 50 55 / 175 = 0.31429 0.01022 ## TweakPsiSegment 0 96 98 / 271 = 0.36162 0.01629 ## TweakPsiPhiSubtree 22 69 80 / 199 = 0.40201 0.01005 ## TweakPsiPhiSegment 17 66 60 / 173 = 0.34682 0.00709 ## TweakHbondSubtree 2 60 55 / 205 = 0.26829 0.01149 ## TweakHbondSegment 1 51 47 / 186 = 0.25269 0.00755 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 14 10 / 48 = 0.20833 0.00171 ## FixOmega 5 2 2 / 84 = 0.02381 0.00521 ## Backrub 34 43 33 / 130 = 0.25385 0.00318 ## BigBackrub 26 33 25 / 122 = 0.20492 0.00708 ## OneRotamer 0 87 56 / 373 = 0.15013 0.00721 ## ClashingRotamer 0 1 1 / 57 = 0.01754 0.00069 ## ClusteredRotamer 13 7 7 / 107 = 0.06542 0.00564 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 198 = 0.02020 0.01963 ## CloseGap 0 16 12 / 161 = 0.07453 0.00871 ## HealGap 0 2 0 / 105 = 0.00000 0.00000 ## MoveGap 0 4 4 / 137 = 0.02920 0.00675 ## ReduceConstraint 0 1 1 / 134 = 0.00746 0.00283 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 319 = 0.02508 0.04051 ## InsertFragment 0 7 6 / 150 = 0.04000 0.00737 ## TwoFragment 0 0 0 / 259 = 0.00000 0.00000 ## CrossOver 3 3 2 / 82 = 0.02439 0.00478 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 46 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 126 = 0.03175 0.00984 # TweakPsiSubtree removed gap before (T0547)D40 # TweakPsiPhi removed gap before (T0547)E576 # TweakPhi removed gap before (T0547)K352 # TweakPhi removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)G544 # TweakPsiSubtree removed gap before (T0547)Y279 # TweakPhi removed gap before (T0547)D428 # TweakPsiSubtree removed gap before (T0547)T390 # TweakPhi removed gap before (T0547)I193 # TweakPsiSubtree removed gap before (T0547)E505 # TweakPsiSubtree removed gap before (T0547)G107 # TweakPhi removed gap before (T0547)A416 # TweakPsiPhi removed gap before (T0547)E294 # TweakPsiSubtree removed gap before (T0547)G252 # TweakPsiSubtree removed gap before (T0547)G78 # TweakPsiPhi removed gap before (T0547)R467 # TweakPhi removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)L441 # TweakPsiSubtree removed gap before (T0547)H384 # TweakPsiSubtree removed gap before (T0547)Q554 # TweakPhi removed gap before (T0547)D298 # TweakPhi removed gap before (T0547)L411 # TweakPsiSubtree removed gap before (T0547)S555 # TweakPsiSubtree removed gap before (T0547)I570 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPsiSubtree removed gap before (T0547)D480 # TweakPhi removed gap before (T0547)E457 # TweakPsiPhi removed gap before (T0547)L389 # TweakPhi removed gap before (T0547)K196 # TweakPhi removed gap before (T0547)G252 # TweakPhi removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)A553 # TweakPsiPhi removed gap before (T0547)V584 # TweakPsiPhi removed gap before (T0547)E37 # TweakPhi removed gap before (T0547)I306 # TweakPsiSubtree removed gap before (T0547)N443 # generation 54: best score out of 20: T0547.try1-opt1-scwrl 193.64758 cost/residue, 1182 clashes 0.16170 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 36 35 / 143 = 0.24476 0.00834 ## JiggleSubtree 0 16 16 / 150 = 0.10667 0.00751 ## JiggleSegment 0 29 32 / 235 = 0.13617 0.01132 ## OptSubtree 0 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 2 1 / 77 = 0.01299 0.00279 ## OptAllSegments 0 0 0 / 68 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 93 = 0.01075 0.00566 ## ShiftSegment 0 1 2 / 195 = 0.01026 0.02882 ## TweakPhiSubtree 5 85 66 / 214 = 0.30841 0.01006 ## TweakPhiSegment 7 73 67 / 195 = 0.34359 0.00931 ## TweakPsiSubtree 0 51 56 / 181 = 0.30939 0.00992 ## TweakPsiSegment 0 99 103 / 281 = 0.36655 0.01640 ## TweakPsiPhiSubtree 22 70 82 / 203 = 0.40394 0.00991 ## TweakPsiPhiSegment 18 68 61 / 176 = 0.34659 0.00725 ## TweakHbondSubtree 2 60 55 / 209 = 0.26316 0.01127 ## TweakHbondSegment 1 52 47 / 192 = 0.24479 0.00732 ## TweakMultimer 33 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 15 11 / 52 = 0.21154 0.00182 ## FixOmega 5 2 2 / 85 = 0.02353 0.00515 ## Backrub 34 44 34 / 134 = 0.25373 0.00317 ## BigBackrub 26 34 26 / 124 = 0.20968 0.00715 ## OneRotamer 0 88 57 / 382 = 0.14921 0.00733 ## ClashingRotamer 0 1 1 / 57 = 0.01754 0.00069 ## ClusteredRotamer 13 7 7 / 108 = 0.06481 0.00559 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 200 = 0.02000 0.01943 ## CloseGap 0 16 12 / 167 = 0.07186 0.00840 ## HealGap 0 2 0 / 107 = 0.00000 0.00000 ## MoveGap 0 4 4 / 138 = 0.02899 0.00670 ## ReduceConstraint 0 1 1 / 135 = 0.00741 0.00281 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 321 = 0.02492 0.04026 ## InsertFragment 0 7 6 / 151 = 0.03974 0.00732 ## TwoFragment 0 0 0 / 262 = 0.00000 0.00000 ## CrossOver 3 3 2 / 83 = 0.02410 0.00472 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 46 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 127 = 0.03150 0.00976 # TweakPsiSubtree removed gap before (T0547)G273 # TweakPsiSubtree removed gap before (T0547)G78 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPsiPhi removed gap before (T0547)F66 # TweakPsiSubtree removed gap before (T0547)H53 # TweakPsiSubtree removed gap before (T0547)L468 # TweakPsiPhi removed gap before (T0547)G252 # TweakPsiPhi removed gap before (T0547)E72 # TweakPhi removed gap before (T0547)L349 # TweakPsiSubtree removed gap before (T0547)F510 # Closed gap before (T0547)L593 # TweakPsiSubtree removed gap before (T0547)F227 # TweakPsiSubtree removed gap before (T0547)F460 # TweakPhi removed gap before (T0547)D602 # TweakPhi removed gap before (T0547)L529 # Closed gap before (T0547)Y106 # TweakPhi removed gap before (T0547)L97 # TweakPhi removed gap before (T0547)E435 # TweakPsiSubtree removed gap before (T0547)E225 # Closed gap before (T0547)L593 # TweakPsiSubtree removed gap before (T0547)E250 # TweakPhi removed gap before (T0547)K76 # TweakPsiPhi removed gap before (T0547)A296 # TweakPsiPhi removed gap before (T0547)K304 # TweakPsiSubtree removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)N179 # Closed gap before (T0547)L593 # TweakPhi removed gap before (T0547)Q554 # Closed gap before (T0547)L593 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)G107 # TweakPsiPhi removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)E278 # TweakPsiPhi removed gap before (T0547)Y363 # TweakPsiSubtree removed gap before (T0547)G42 # TweakPhi removed gap before (T0547)Y605 # TweakPsiSubtree removed gap before (T0547)I350 # generation 55: best score out of 20: T0547.try1-opt1-scwrl 193.46329 cost/residue, 1190 clashes 0.16064 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 38 36 / 150 = 0.24000 0.00802 ## JiggleSubtree 0 16 16 / 151 = 0.10596 0.00746 ## JiggleSegment 0 29 32 / 242 = 0.13223 0.01100 ## OptSubtree 0 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 2 1 / 79 = 0.01266 0.00272 ## OptAllSegments 0 0 0 / 68 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 94 = 0.01064 0.00560 ## ShiftSegment 0 1 2 / 197 = 0.01015 0.02853 ## TweakPhiSubtree 6 86 67 / 217 = 0.30876 0.00998 ## TweakPhiSegment 7 73 68 / 200 = 0.34000 0.00909 ## TweakPsiSubtree 0 54 59 / 188 = 0.31383 0.01085 ## TweakPsiSegment 0 101 106 / 290 = 0.36552 0.01634 ## TweakPsiPhiSubtree 23 71 82 / 208 = 0.39423 0.00967 ## TweakPsiPhiSegment 18 69 63 / 180 = 0.35000 0.00724 ## TweakHbondSubtree 2 61 55 / 210 = 0.26190 0.01122 ## TweakHbondSegment 1 54 49 / 198 = 0.24747 0.00805 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 16 12 / 53 = 0.22642 0.00198 ## FixOmega 5 2 2 / 87 = 0.02299 0.00503 ## Backrub 35 45 35 / 136 = 0.25735 0.00326 ## BigBackrub 26 35 27 / 128 = 0.21094 0.00697 ## OneRotamer 0 91 57 / 391 = 0.14578 0.00716 ## ClashingRotamer 0 1 1 / 59 = 0.01695 0.00067 ## ClusteredRotamer 13 7 7 / 109 = 0.06422 0.00554 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 200 = 0.02000 0.01943 ## CloseGap 0 16 12 / 174 = 0.06897 0.00806 ## HealGap 0 2 0 / 109 = 0.00000 0.00000 ## MoveGap 0 4 4 / 141 = 0.02837 0.00656 ## ReduceConstraint 0 1 1 / 136 = 0.00735 0.00279 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 324 = 0.02469 0.03989 ## InsertFragment 0 7 6 / 152 = 0.03947 0.00727 ## TwoFragment 0 0 0 / 263 = 0.00000 0.00000 ## CrossOver 3 3 2 / 83 = 0.02410 0.00472 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 46 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 128 = 0.03125 0.00968 # TweakPhi removed gap before (T0547)F599 # TweakPsiSubtree removed gap before (T0547)G395 # TweakPhi removed gap before (T0547)Q424 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)F232 # TweakPhi removed gap before (T0547)F530 # TweakPsiSubtree removed gap before (T0547)K135 # TweakPhi removed gap before (T0547)L339 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)E12 # TweakPhi removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)K264 # TweakPsiSubtree removed gap before (T0547)L399 # TweakPsiSubtree removed gap before (T0547)K57 # TweakPhi removed gap before (T0547)H53 # TweakPsiPhi removed gap before (T0547)I212 # TweakPsiSubtree removed gap before (T0547)H410 # TweakPsiPhi removed gap before (T0547)I570 # TweakPsiSubtree removed gap before (T0547)G181 # TweakPhi removed gap before (T0547)A268 # TweakPhi removed gap before (T0547)G252 # TweakPhi removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)N179 # TweakPhi removed gap before (T0547)K196 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPhi removed gap before (T0547)M463 # TweakPhi removed gap before (T0547)L419 # TweakPsiPhi removed gap before (T0547)E12 # TweakPhi removed gap before (T0547)F514 # generation 56: best score out of 20: T0547.try1-opt1-scwrl 193.34570 cost/residue, 1191 clashes 0.16050 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 38 36 / 154 = 0.23377 0.00781 ## JiggleSubtree 0 16 16 / 157 = 0.10191 0.00717 ## JiggleSegment 0 30 32 / 245 = 0.13061 0.01086 ## OptSubtree 0 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 2 1 / 79 = 0.01266 0.00272 ## OptAllSegments 0 0 0 / 68 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 95 = 0.01053 0.00554 ## ShiftSegment 0 1 2 / 199 = 0.01005 0.02825 ## TweakPhiSubtree 6 90 70 / 226 = 0.30973 0.00978 ## TweakPhiSegment 7 75 69 / 207 = 0.33333 0.00883 ## TweakPsiSubtree 0 54 59 / 193 = 0.30570 0.01057 ## TweakPsiSegment 0 102 109 / 297 = 0.36700 0.01600 ## TweakPsiPhiSubtree 23 71 83 / 211 = 0.39336 0.00958 ## TweakPsiPhiSegment 18 70 64 / 181 = 0.35359 0.00721 ## TweakHbondSubtree 2 62 56 / 212 = 0.26415 0.01167 ## TweakHbondSegment 1 56 50 / 203 = 0.24631 0.00799 ## TweakMultimer 36 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 17 13 / 55 = 0.23636 0.00214 ## FixOmega 5 2 2 / 90 = 0.02222 0.00487 ## Backrub 36 46 35 / 140 = 0.25000 0.00316 ## BigBackrub 27 36 28 / 131 = 0.21374 0.00706 ## OneRotamer 0 91 57 / 399 = 0.14286 0.00701 ## ClashingRotamer 0 1 1 / 60 = 0.01667 0.00066 ## ClusteredRotamer 13 7 7 / 112 = 0.06250 0.00539 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 201 = 0.01990 0.01934 ## CloseGap 0 16 12 / 177 = 0.06780 0.00792 ## HealGap 0 2 0 / 109 = 0.00000 0.00000 ## MoveGap 0 4 4 / 142 = 0.02817 0.00651 ## ReduceConstraint 0 1 1 / 138 = 0.00725 0.00275 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 54 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 8 / 328 = 0.02439 0.03940 ## InsertFragment 0 7 6 / 154 = 0.03896 0.00718 ## TwoFragment 0 0 0 / 269 = 0.00000 0.00000 ## CrossOver 3 3 2 / 83 = 0.02410 0.00472 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 47 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 128 = 0.03125 0.00968 # TweakPsiSubtree removed gap before (T0547)E60 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F447 # TweakPsiSubtree removed gap before (T0547)L332 # TweakPsiSubtree removed gap before (T0547)A114 # TweakPhi removed gap before (T0547)F318 # TweakPsiSubtree removed gap before (T0547)L351 # TweakPhi removed gap before (T0547)A374 # TweakPsiSubtree removed gap before (T0547)E488 # TweakPhi removed gap before (T0547)V184 # TweakPhi removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)F227 # TweakPsiSubtree removed gap before (T0547)Q89 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)N585 # TweakPhi removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)H233 # TweakPsiSubtree removed gap before (T0547)G205 # TweakPsiPhi removed gap before (T0547)F510 # TweakPsiSubtree removed gap before (T0547)W479 # TweakPsiSubtree removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)E250 # TweakPsiSubtree removed gap before (T0547)N580 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)R474 # TweakPsiSubtree removed gap before (T0547)I55 # Closed gap before (T0547)L593 # TweakPsiSubtree removed gap before (T0547)V336 # TweakPsiSubtree removed gap before (T0547)G190 # TweakPsiSubtree removed gap before (T0547)A427 # generation 57: best score out of 20: T0547.try1-opt1-scwrl 193.31873 cost/residue, 1191 clashes 0.16050 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 39 37 / 157 = 0.23567 0.00783 ## JiggleSubtree 0 17 16 / 159 = 0.10063 0.00708 ## JiggleSegment 0 30 32 / 246 = 0.13008 0.01082 ## OptSubtree 0 0 0 / 50 = 0.00000 0.00000 ## OptSegment 0 2 1 / 79 = 0.01266 0.00272 ## OptAllSegments 0 0 0 / 68 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 95 = 0.01053 0.00554 ## ShiftSegment 0 1 2 / 201 = 0.00995 0.02796 ## TweakPhiSubtree 7 90 71 / 229 = 0.31004 0.00977 ## TweakPhiSegment 7 76 72 / 211 = 0.34123 0.00904 ## TweakPsiSubtree 0 56 61 / 203 = 0.30049 0.01032 ## TweakPsiSegment 0 103 111 / 307 = 0.36156 0.01555 ## TweakPsiPhiSubtree 24 71 83 / 211 = 0.39336 0.00958 ## TweakPsiPhiSegment 18 70 64 / 182 = 0.35165 0.00717 ## TweakHbondSubtree 3 65 59 / 220 = 0.26818 0.01144 ## TweakHbondSegment 1 57 51 / 207 = 0.24638 0.00784 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 19 15 / 57 = 0.26316 0.00230 ## FixOmega 5 2 2 / 90 = 0.02222 0.00487 ## Backrub 37 48 37 / 146 = 0.25342 0.00334 ## BigBackrub 29 36 28 / 133 = 0.21053 0.00695 ## OneRotamer 0 93 58 / 407 = 0.14251 0.00694 ## ClashingRotamer 0 1 1 / 62 = 0.01613 0.00064 ## ClusteredRotamer 13 7 7 / 112 = 0.06250 0.00539 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 205 = 0.01951 0.01896 ## CloseGap 0 18 12 / 182 = 0.06593 0.00771 ## HealGap 0 2 0 / 110 = 0.00000 0.00000 ## MoveGap 0 4 4 / 144 = 0.02778 0.00642 ## ReduceConstraint 0 1 1 / 140 = 0.00714 0.00271 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 54 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 8 / 330 = 0.02424 0.03916 ## InsertFragment 0 7 6 / 157 = 0.03822 0.00704 ## TwoFragment 0 0 0 / 273 = 0.00000 0.00000 ## CrossOver 3 3 2 / 83 = 0.02410 0.00472 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 49 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 131 = 0.03053 0.00946 # TweakPsiPhi removed gap before (T0547)Q237 # TweakPsiPhi removed gap before (T0547)Y279 # Closed gap before (T0547)L593 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)D40 # TweakPhi removed gap before (T0547)F340 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I417 # TweakPsiPhi removed gap before (T0547)I432 # TweakPhi removed gap before (T0547)L182 # Closed gap before (T0547)L593 # TweakPsiPhi removed gap before (T0547)T559 # TweakPhi removed gap before (T0547)K175 # TweakPsiSubtree removed gap before (T0547)I269 # TweakPsiPhi removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)K582 # TweakPhi removed gap before (T0547)K246 # TweakPhi removed gap before (T0547)K71 # TweakPsiPhi removed gap before (T0547)A195 # TweakPsiSubtree removed gap before (T0547)K68 # TweakPsiSubtree removed gap before (T0547)E386 # TweakPsiPhi removed gap before (T0547)R439 # TweakPhi removed gap before (T0547)L375 # TweakPsiSubtree removed gap before (T0547)K260 # TweakPsiSubtree removed gap before (T0547)K310 # TweakPsiPhi removed gap before (T0547)I556 # TweakPsiPhi removed gap before (T0547)K587 # TweakPsiPhi removed gap before (T0547)V300 # TweakPhi removed gap before (T0547)D103 # TweakPhi removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)N443 # TweakPsiSubtree removed gap before (T0547)L419 # TweakPsiPhi removed gap before (T0547)V336 # TweakPsiSubtree removed gap before (T0547)I359 # TweakPsiSubtree removed gap before (T0547)L583 # TweakPsiSubtree removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)E361 # generation 58: best score out of 20: T0547.try1-opt1-scwrl 193.27005 cost/residue, 1196 clashes 0.16029 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 40 38 / 158 = 0.24051 0.00788 ## JiggleSubtree 0 17 16 / 160 = 0.10000 0.00704 ## JiggleSegment 0 30 32 / 256 = 0.12500 0.01039 ## OptSubtree 0 0 0 / 50 = 0.00000 0.00000 ## OptSegment 0 2 1 / 80 = 0.01250 0.00269 ## OptAllSegments 0 0 0 / 68 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 96 = 0.01042 0.00549 ## ShiftSegment 0 1 2 / 202 = 0.00990 0.02783 ## TweakPhiSubtree 7 92 73 / 232 = 0.31466 0.00973 ## TweakPhiSegment 7 77 73 / 216 = 0.33796 0.00887 ## TweakPsiSubtree 0 57 62 / 209 = 0.29665 0.01003 ## TweakPsiSegment 0 105 114 / 316 = 0.36076 0.01516 ## TweakPsiPhiSubtree 26 73 86 / 218 = 0.39450 0.00947 ## TweakPsiPhiSegment 18 70 66 / 187 = 0.35294 0.00706 ## TweakHbondSubtree 3 70 64 / 225 = 0.28444 0.01194 ## TweakHbondSegment 1 59 53 / 211 = 0.25118 0.00790 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 19 15 / 59 = 0.25424 0.00222 ## FixOmega 5 2 2 / 90 = 0.02222 0.00487 ## Backrub 39 49 39 / 153 = 0.25490 0.00333 ## BigBackrub 29 36 30 / 140 = 0.21429 0.00668 ## OneRotamer 0 93 58 / 412 = 0.14078 0.00685 ## ClashingRotamer 0 1 1 / 64 = 0.01562 0.00062 ## ClusteredRotamer 13 7 7 / 112 = 0.06250 0.00539 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 207 = 0.01932 0.01878 ## CloseGap 0 18 12 / 185 = 0.06486 0.00758 ## HealGap 0 2 0 / 111 = 0.00000 0.00000 ## MoveGap 0 4 4 / 148 = 0.02703 0.00625 ## ReduceConstraint 0 1 1 / 140 = 0.00714 0.00271 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 55 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 8 / 334 = 0.02395 0.03869 ## InsertFragment 0 7 6 / 157 = 0.03822 0.00704 ## TwoFragment 0 0 0 / 274 = 0.00000 0.00000 ## CrossOver 3 3 2 / 83 = 0.02410 0.00472 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 51 = 0.00000 0.00000 ## ReduceClash 0 4 4 / 131 = 0.03053 0.00946 # TweakPsiPhi removed gap before (T0547)N253 # TweakPsiSubtree removed gap before (T0547)A569 # TweakPhi removed gap before (T0547)L47 # TweakPhi removed gap before (T0547)E12 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Q237 # TweakPsiSubtree removed gap before (T0547)N443 # TweakPsiPhi removed gap before (T0547)K95 # TweakPsiSubtree removed gap before (T0547)I333 # TweakPhi removed gap before (T0547)K543 # TweakPsiPhi removed gap before (T0547)F514 # TweakPhi removed gap before (T0547)V300 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPsiSubtree removed gap before (T0547)A276 # TweakPsiSubtree removed gap before (T0547)F93 # TweakPsiSubtree removed gap before (T0547)E552 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)D566 # TweakPsiSubtree removed gap before (T0547)E250 # TweakPhi removed gap before (T0547)K414 # TweakPsiSubtree removed gap before (T0547)A247 # TweakPsiPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)N603 # TweakPsiSubtree removed gap before (T0547)N580 # TweakPsiPhi removed gap before (T0547)W479 # generation 59: best score out of 20: T0547.try1-opt1-scwrl 192.97214 cost/residue, 1198 clashes 0.16151 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 43 41 / 163 = 0.25153 0.00771 ## JiggleSubtree 0 17 16 / 164 = 0.09756 0.00687 ## JiggleSegment 0 30 32 / 261 = 0.12261 0.01019 ## OptSubtree 0 0 0 / 50 = 0.00000 0.00000 ## OptSegment 0 2 1 / 83 = 0.01205 0.00259 ## OptAllSegments 0 0 0 / 71 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 99 = 0.01010 0.00532 ## ShiftSegment 0 1 2 / 203 = 0.00985 0.02769 ## TweakPhiSubtree 7 93 73 / 235 = 0.31064 0.00961 ## TweakPhiSegment 7 78 73 / 218 = 0.33486 0.00879 ## TweakPsiSubtree 0 59 64 / 218 = 0.29358 0.00966 ## TweakPsiSegment 0 106 115 / 322 = 0.35714 0.01491 ## TweakPsiPhiSubtree 26 74 87 / 221 = 0.39367 0.00944 ## TweakPsiPhiSegment 18 70 67 / 190 = 0.35263 0.00696 ## TweakHbondSubtree 3 73 66 / 232 = 0.28448 0.01217 ## TweakHbondSegment 1 60 54 / 216 = 0.25000 0.00778 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 19 15 / 59 = 0.25424 0.00222 ## FixOmega 5 2 2 / 91 = 0.02198 0.00481 ## Backrub 40 50 40 / 158 = 0.25316 0.00334 ## BigBackrub 29 36 30 / 141 = 0.21277 0.00663 ## OneRotamer 0 93 58 / 417 = 0.13909 0.00677 ## ClashingRotamer 0 1 1 / 66 = 0.01515 0.00060 ## ClusteredRotamer 13 7 7 / 113 = 0.06195 0.00534 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 210 = 0.01905 0.01851 ## CloseGap 0 18 12 / 187 = 0.06417 0.00750 ## HealGap 0 2 0 / 113 = 0.00000 0.00000 ## MoveGap 0 4 4 / 151 = 0.02649 0.00612 ## ReduceConstraint 0 1 1 / 142 = 0.00704 0.00267 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 55 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 8 / 337 = 0.02374 0.03835 ## InsertFragment 0 7 6 / 159 = 0.03774 0.00695 ## TwoFragment 0 0 0 / 278 = 0.00000 0.00000 ## CrossOver 3 3 2 / 83 = 0.02410 0.00472 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 1 1 / 52 = 0.01923 0.00614 ## ReduceClash 0 4 4 / 132 = 0.03030 0.00939 # TweakPhi removed gap before (T0547)R439 # TweakPhi removed gap before (T0547)E505 # TweakPsiSubtree removed gap before (T0547)P472 # Closed gap before (T0547)L593 # TweakPhi removed gap before (T0547)N132 # TweakPsiPhi removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)L465 # TweakPsiSubtree removed gap before (T0547)K175 # TweakPsiSubtree removed gap before (T0547)K267 # TweakPsiSubtree removed gap before (T0547)I550 # TweakPsiPhi removed gap before (T0547)A536 # TweakPhi removed gap before (T0547)L49 # TweakPhi removed gap before (T0547)T534 # TweakPsiPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)K304 # TweakPsiSubtree removed gap before (T0547)I570 # TweakPhi removed gap before (T0547)N80 # TweakPsiSubtree removed gap before (T0547)G111 # TweakPsiPhi removed gap before (T0547)G74 # TweakPsiSubtree removed gap before (T0547)E435 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)L557 # TweakPsiSubtree removed gap before (T0547)E314 # TweakPsiPhi removed gap before (T0547)E343 # TweakPhi removed gap before (T0547)E250 # TweakPsiPhi removed gap before (T0547)I432 # TweakPsiPhi removed gap before (T0547)L85 # TweakPhi removed gap before (T0547)D41 # generation 60: best score out of 20: T0547.try1-opt1-scwrl 192.96205 cost/residue, 1199 clashes 0.16151 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 45 42 / 168 = 0.25000 0.00760 ## JiggleSubtree 0 17 16 / 165 = 0.09697 0.00682 ## JiggleSegment 0 32 33 / 264 = 0.12500 0.01027 ## OptSubtree 0 0 0 / 50 = 0.00000 0.00000 ## OptSegment 0 2 1 / 84 = 0.01190 0.00256 ## OptAllSegments 0 0 0 / 72 = 0.00000 0.00000 ## ShiftSubtree 0 1 1 / 100 = 0.01000 0.00527 ## ShiftSegment 0 1 2 / 204 = 0.00980 0.02755 ## TweakPhiSubtree 7 94 74 / 238 = 0.31092 0.00984 ## TweakPhiSegment 7 79 75 / 224 = 0.33482 0.00934 ## TweakPsiSubtree 0 60 66 / 223 = 0.29596 0.00989 ## TweakPsiSegment 0 107 115 / 328 = 0.35061 0.01464 ## TweakPsiPhiSubtree 26 75 88 / 225 = 0.39111 0.00930 ## TweakPsiPhiSegment 18 70 68 / 193 = 0.35233 0.00710 ## TweakHbondSubtree 3 75 66 / 237 = 0.27848 0.01192 ## TweakHbondSegment 1 62 55 / 219 = 0.25114 0.00777 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 20 15 / 62 = 0.24194 0.00212 ## FixOmega 5 2 2 / 91 = 0.02198 0.00481 ## Backrub 40 50 40 / 164 = 0.24390 0.00321 ## BigBackrub 29 37 31 / 142 = 0.21831 0.00666 ## OneRotamer 0 96 59 / 425 = 0.13882 0.00682 ## ClashingRotamer 0 1 1 / 67 = 0.01493 0.00059 ## ClusteredRotamer 13 7 7 / 113 = 0.06195 0.00534 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 4 / 211 = 0.01896 0.01842 ## CloseGap 0 18 12 / 191 = 0.06283 0.00734 ## HealGap 0 2 0 / 115 = 0.00000 0.00000 ## MoveGap 0 4 4 / 153 = 0.02614 0.00604 ## ReduceConstraint 0 1 1 / 142 = 0.00704 0.00267 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 55 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 8 / 340 = 0.02353 0.03801 ## InsertFragment 0 7 6 / 159 = 0.03774 0.00695 ## TwoFragment 0 0 0 / 279 = 0.00000 0.00000 ## CrossOver 3 3 2 / 84 = 0.02381 0.00467 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 1 1 / 70 = 0.01429 0.00456 ## ReduceClash 0 4 4 / 133 = 0.03008 0.00932 # request to SCWRL produces command: ulimit -t 550 ; scwrl4 -t -i /var/tmp/to_scwrl_1258522136.pdb -s /var/tmp/to_scwrl_1258522136.seq -o /var/tmp/from_scwrl_1258522136.pdb > /var/tmp/scwrl_1258522136.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1258522136.pdb # T0547.try1-opt1-scwrl-scwrl 193.05933 cost/residue 1100 clashes 0.16152 breaks # command:# naming current conformation T0547.try1-opt2 # command:# command:# CostConform T0547.try1-opt2 costs 192.96205 T0547.try1-opt1-scwrl costs 201.98390 T0547.try1-opt1 costs 206.03970 T0547.try1 costs 266.26142 T0547.try1-al8 costs 274.40750 T0547.try1-al7 costs 274.27132 T0547.try1-al6 costs 274.27132 T0547.try1-al5 costs 274.27132 T0547.try1-al4 costs 274.27132 T0547.try1-al3 costs 274.27132 T0547.try1-al2 costs 285.59712 T0547.try1-al1A costs 310.16394 T0547.try1-al1 costs 380.29864 T0547 costs 492.44756 # command:# ScaleCost scaled parameters of cost = # ( 50.00000 * align_constraints + 5.00000 * ehl2_constraints + 5.00000 * align_sheets + 10.00000 * pred_nb11_back(9.65000) + 10.00000 * pred_alpha_back + 5.00000 * pred_n_notor_back + 5.00000 * pred_bys_back + 3.00000 * pred_pb_back + 15.00000 * wet6.5(6.50000, /log(length)) + 15.00000 * dry5(5.00000) + 15.00000 * dry6.5(6.50000) + 20.00000 * dry8(8.00000) + 15.00000 * dry12(12.00000) + 2.00000 * phobic_fit + 5.00000 * sidechain + 2.00000 * n_ca_c + 5.00000 * bad_peptide + 25.00000 * soft_clashes + 10.00000 * backbone_clashes + 100.00000 * break + 10.00000 * hbond_geom + 10.00000 * hbond_geom_backbone + 20.00000 * hbond_geom_beta + 40.00000 * hbond_geom_beta_pair + 0.50000 * maybe_metal + 5.00000 * maybe_ssbond_geom ) # command:# CostConform T0547.try1-opt2 costs 223.29034 T0547.try1-opt1-scwrl costs 233.61062 T0547.try1-opt1 costs 246.80611 T0547.try1 costs 321.86266 T0547.try1-al8 costs 345.00953 T0547.try1-al7 costs 344.85771 T0547.try1-al6 costs 344.85771 T0547.try1-al5 costs 344.85771 T0547.try1-al4 costs 344.85771 T0547.try1-al3 costs 344.85771 T0547.try1-al2 costs 359.57157 T0547.try1-al1A costs 405.36501 T0547.try1-al1 costs 497.06397 T0547 costs 537.89141 # command:CPU_time= 11524.698 sec, elapsed time= 14720.838 sec. # command:# OptConform to optimize cost = # ( 50.000 * align_constraints + 5.000 * ehl2_constraints + 5.000 * align_sheets + 10.000 * pred_nb11_back(9.650) + 10.000 * pred_alpha_back + 5.000 * pred_n_notor_back + 5.000 * pred_bys_back + 3.000 * pred_pb_back + 15.000 * wet6.5(6.500, /log(length)) + 15.000 * dry5(5.000) + 15.000 * dry6.5(6.500) + 20.000 * dry8(8.000) + 15.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 2.000 * n_ca_c + 5.000 * bad_peptide + 25.000 * soft_clashes + 10.000 * backbone_clashes + 100.000 * break + 10.000 * hbond_geom + 10.000 * hbond_geom_backbone + 20.000 * hbond_geom_beta + 40.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 5.000 * maybe_ssbond_geom ) # Will do 2 iterations of optimization # iteration 0 # filling pool to have 40 conformations # TweakPsiSubtree removed gap before (T0547)I573 # TweakPhi removed gap before (T0547)N221 # TweakPsiSubtree removed gap before (T0547)I180 # TweakPsiSubtree removed gap before (T0547)K495 # best score in initial pool out of 40: T0547.try1-opt2 at pool[13] 223.290 cost/residue, 1199 clashes 0.162 breaks # optimizing backbone with 40 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 16 conformations from old pool # TweakPhi removed gap before (T0547)E406 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)E250 # TweakPsiSubtree removed gap before (T0547)P451 # TweakPsiPhi removed gap before (T0547)N61 # TweakPhi removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)E308 # generation 1: best score out of 40: T0547.try1-opt2 223.259 cost/residue, 1200 clashes 0.161 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 1 / 3 = 0.33333 0.01990 ## JiggleSubtree 0 0 1 / 1 = 1.00000 0.01016 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 2 = 0.00000 0.00000 ## OptSegment 0 1 0 / 1 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 4 = 0.25000 0.00506 ## TweakPhiSubtree 0 2 3 / 3 = 1.00000 0.09409 ## TweakPhiSegment 0 1 1 / 1 = 1.00000 0.10558 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 2 1 / 2 = 0.50000 0.00043 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 3 1 / 4 = 0.25000 0.00788 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 1 / 1 = 1.00000 0.00848 ## FixOmega 0 0 0 / 2 = 0.00000 0.00000 ## Backrub 1 0 0 / 3 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 7 1 / 13 = 0.07692 0.01824 ## ClashingRotamer 0 0 0 / 1 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 4 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 5 = 0.00000 0.00000 ## CloseGap 0 0 0 / 1 = 0.00000 0.00000 ## HealGap 0 3 0 / 5 = 0.00000 0.00000 ## MoveGap 0 1 0 / 2 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 2 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 2 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 5 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 2 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 14 = 0.00000 0.00000 ## CrossOver 0 0 0 / 1 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 0 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 5 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 1 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)I15 # TweakPhi removed gap before (T0547)L275 # TweakPhi removed gap before (T0547)E240 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPhi removed gap before (T0547)S449 # TweakPhi removed gap before (T0547)E213 # TweakPhi removed gap before (T0547)A146 # TweakPhi removed gap before (T0547)A327 # TweakPsiPhi removed gap before (T0547)R467 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G42 # TweakPhi removed gap before (T0547)A518 # TweakPhi removed gap before (T0547)K177 # TweakPhi removed gap before (T0547)E320 # TweakPsiSubtree removed gap before (T0547)I592 # TweakPsiSubtree removed gap before (T0547)A276 # TweakPsiSubtree removed gap before (T0547)L48 # TweakPsiSubtree removed gap before (T0547)E505 # generation 2: best score out of 40: T0547.try1-opt2 223.21355 cost/residue, 1196 clashes 0.16150 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 1 / 5 = 0.20000 0.01194 ## JiggleSubtree 0 0 1 / 2 = 0.50000 0.00508 ## JiggleSegment 0 5 1 / 7 = 0.14286 0.00130 ## OptSubtree 0 0 0 / 2 = 0.00000 0.00000 ## OptSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 11 = 0.09091 0.00184 ## TweakPhiSubtree 2 4 5 / 7 = 0.71429 0.04716 ## TweakPhiSegment 0 4 3 / 7 = 0.42857 0.02520 ## TweakPsiSubtree 0 2 1 / 4 = 0.25000 0.01132 ## TweakPsiSegment 0 2 2 / 3 = 0.66667 0.01438 ## TweakPsiPhiSubtree 2 4 1 / 4 = 0.25000 0.00021 ## TweakPsiPhiSegment 1 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 1 / 2 = 0.50000 0.00066 ## TweakHbondSegment 0 4 3 / 7 = 0.42857 0.01234 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 0 1 / 1 = 1.00000 0.00848 ## FixOmega 0 0 0 / 3 = 0.00000 0.00000 ## Backrub 2 3 1 / 6 = 0.16667 0.00075 ## BigBackrub 0 0 1 / 3 = 0.33333 0.03925 ## OneRotamer 0 12 2 / 21 = 0.09524 0.01353 ## ClashingRotamer 0 0 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 5 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 6 = 0.00000 0.00000 ## CloseGap 0 0 0 / 2 = 0.00000 0.00000 ## HealGap 0 4 1 / 11 = 0.09091 0.01951 ## MoveGap 0 1 0 / 4 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 2 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 5 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 5 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 28 = 0.00000 0.00000 ## CrossOver 0 0 0 / 3 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 0 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 6 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 5 = 0.00000 0.00000 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPhi removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)E278 # TweakPsiSubtree removed gap before (T0547)I573 # TweakPhi removed gap before (T0547)A374 # TweakPsiSubtree removed gap before (T0547)H53 # TweakPsiSubtree removed gap before (T0547)S445 # TweakPhi removed gap before (T0547)E26 # TweakPhi removed gap before (T0547)K607 # TweakPhi removed gap before (T0547)N105 # TweakPhi removed gap before (T0547)N508 # TweakPsiPhi removed gap before (T0547)K71 # TweakPhi removed gap before (T0547)K415 # TweakPsiSubtree removed gap before (T0547)F318 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)I556 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)N289 # TweakPhi removed gap before (T0547)L529 # generation 3: best score out of 40: T0547.try1-opt2 223.09663 cost/residue, 1167 clashes 0.16506 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 1 / 6 = 0.16667 0.00995 ## JiggleSubtree 0 0 1 / 2 = 0.50000 0.00508 ## JiggleSegment 0 6 2 / 10 = 0.20000 0.00122 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 16 = 0.06250 0.00127 ## TweakPhiSubtree 2 8 7 / 14 = 0.50000 0.02810 ## TweakPhiSegment 0 5 4 / 12 = 0.33333 0.01504 ## TweakPsiSubtree 0 2 1 / 5 = 0.20000 0.00906 ## TweakPsiSegment 0 3 3 / 6 = 0.50000 0.02999 ## TweakPsiPhiSubtree 2 5 2 / 5 = 0.40000 0.00574 ## TweakPsiPhiSegment 1 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 3 2 / 4 = 0.50000 0.01210 ## TweakHbondSegment 0 4 3 / 8 = 0.37500 0.01080 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 0 1 / 3 = 0.33333 0.00283 ## FixOmega 0 0 0 / 7 = 0.00000 0.00000 ## Backrub 4 5 1 / 8 = 0.12500 0.00056 ## BigBackrub 2 2 2 / 5 = 0.40000 0.02470 ## OneRotamer 0 20 6 / 33 = 0.18182 0.01616 ## ClashingRotamer 0 0 0 / 6 = 0.00000 0.00000 ## ClusteredRotamer 1 3 0 / 5 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 11 = 0.00000 0.00000 ## CloseGap 0 0 0 / 5 = 0.00000 0.00000 ## HealGap 0 4 1 / 15 = 0.06667 0.01431 ## MoveGap 0 1 0 / 7 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 5 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 9 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 7 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 6 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 34 = 0.00000 0.00000 ## CrossOver 0 0 0 / 6 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 7 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 7 = 0.00000 0.00000 # Closed gap before (T0547)L593 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A251 # TweakPsiPhi removed gap before (T0547)D503 # TweakPhi removed gap before (T0547)T228 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)A69 # TweakPhi removed gap before (T0547)Y440 # TweakPsiPhi removed gap before (T0547)Q309 # TweakPhi removed gap before (T0547)D103 # TweakPsiSubtree removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)T534 # TweakPhi removed gap before (T0547)Y366 # TweakPsiPhi removed gap before (T0547)Y83 # TweakPsiSubtree removed gap before (T0547)R173 # TweakPhi removed gap before (T0547)L515 # TweakPsiSubtree removed gap before (T0547)G455 # Healed gap before (T0547)Y43 residual break only 0.044 # generation 4: best score out of 40: T0547.try1-opt2 222.95403 cost/residue, 1198 clashes 0.15379 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 2 / 7 = 0.28571 0.00885 ## JiggleSubtree 0 0 1 / 5 = 0.20000 0.00203 ## JiggleSegment 0 6 2 / 13 = 0.15385 0.00094 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 20 = 0.05000 0.00101 ## TweakPhiSubtree 2 11 9 / 19 = 0.47368 0.03043 ## TweakPhiSegment 0 5 4 / 14 = 0.28571 0.01289 ## TweakPsiSubtree 0 3 1 / 6 = 0.16667 0.00755 ## TweakPsiSegment 0 4 3 / 9 = 0.33333 0.02000 ## TweakPsiPhiSubtree 2 6 3 / 7 = 0.42857 0.00621 ## TweakPsiPhiSegment 1 3 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 7 4 / 10 = 0.40000 0.00782 ## TweakHbondSegment 0 5 4 / 10 = 0.40000 0.01883 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 0 1 / 4 = 0.25000 0.00212 ## FixOmega 0 0 0 / 9 = 0.00000 0.00000 ## Backrub 5 10 3 / 13 = 0.23077 0.00495 ## BigBackrub 3 4 2 / 9 = 0.22222 0.01372 ## OneRotamer 0 23 7 / 38 = 0.18421 0.01706 ## ClashingRotamer 0 0 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 1 3 0 / 8 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 16 = 0.00000 0.00000 ## CloseGap 0 0 0 / 7 = 0.00000 0.00000 ## HealGap 0 5 2 / 22 = 0.09091 0.01951 ## MoveGap 0 1 0 / 9 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 6 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 7 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 9 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 39 = 0.00000 0.00000 ## CrossOver 0 0 0 / 7 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 11 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 9 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)M261 # TweakPsiSubtree removed gap before (T0547)T390 # TweakPhi removed gap before (T0547)S188 # TweakPhi removed gap before (T0547)A326 # TweakPsiSubtree removed gap before (T0547)I556 # TweakPsiSubtree removed gap before (T0547)D494 # TweakPsiPhi removed gap before (T0547)T473 # TweakPsiSubtree removed gap before (T0547)V35 # TweakPsiPhi removed gap before (T0547)E542 # TweakPhi removed gap before (T0547)N373 # TweakPsiPhi removed gap before (T0547)A553 # TweakPhi removed gap before (T0547)K589 # TweakPsiSubtree removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)V397 # TweakPsiSubtree removed gap before (T0547)I538 # BackrubGuts cancelled---proline or break # generation 5: best score out of 40: T0547.try1-opt2 222.91876 cost/residue, 1194 clashes 0.15398 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 7 3 / 8 = 0.37500 0.01289 ## JiggleSubtree 0 0 1 / 7 = 0.14286 0.00145 ## JiggleSegment 0 6 3 / 14 = 0.21429 0.00548 ## OptSubtree 0 0 0 / 9 = 0.00000 0.00000 ## OptSegment 0 1 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 24 = 0.04167 0.00084 ## TweakPhiSubtree 2 13 9 / 23 = 0.39130 0.02514 ## TweakPhiSegment 0 5 4 / 15 = 0.26667 0.01203 ## TweakPsiSubtree 0 4 2 / 7 = 0.28571 0.01429 ## TweakPsiSegment 0 8 4 / 14 = 0.28571 0.01310 ## TweakPsiPhiSubtree 2 8 4 / 11 = 0.36364 0.00412 ## TweakPsiPhiSegment 2 4 1 / 6 = 0.16667 0.00258 ## TweakHbondSubtree 0 8 5 / 14 = 0.35714 0.00811 ## TweakHbondSegment 0 5 4 / 12 = 0.33333 0.01569 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 0 1 / 4 = 0.25000 0.00212 ## FixOmega 0 0 0 / 11 = 0.00000 0.00000 ## Backrub 6 11 4 / 14 = 0.28571 0.00532 ## BigBackrub 3 5 2 / 11 = 0.18182 0.01123 ## OneRotamer 0 32 11 / 59 = 0.18644 0.01411 ## ClashingRotamer 0 0 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 1 3 0 / 8 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 17 = 0.00000 0.00000 ## CloseGap 0 1 0 / 11 = 0.00000 0.00000 ## HealGap 0 5 2 / 27 = 0.07407 0.01590 ## MoveGap 0 1 0 / 11 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 12 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 9 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 11 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 45 = 0.00000 0.00000 ## CrossOver 0 0 0 / 7 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 11 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 9 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)K76 # TweakPhi removed gap before (T0547)L275 # TweakPsiSubtree removed gap before (T0547)K423 # TweakPhi removed gap before (T0547)E225 # TweakPsiSubtree removed gap before (T0547)P84 # TweakPhi removed gap before (T0547)R402 # TweakPhi removed gap before (T0547)I34 # TweakPsiSubtree removed gap before (T0547)P176 # TweakPhi removed gap before (T0547)F73 # TweakPsiPhi removed gap before (T0547)L100 # TweakPsiPhi removed gap before (T0547)K246 # TweakPsiPhi removed gap before (T0547)M120 # TweakPsiPhi removed gap before (T0547)T409 # TweakPhi removed gap before (T0547)F530 # TweakPsiPhi removed gap before (T0547)G604 # TweakPhi removed gap before (T0547)Q437 # TweakPhi removed gap before (T0547)I153 # TweakPsiSubtree removed gap before (T0547)L375 # TweakPhi removed gap before (T0547)L441 # TweakPsiSubtree removed gap before (T0547)G199 # TweakPhi removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)K304 # TweakPsiPhi removed gap before (T0547)L606 # TweakPsiPhi removed gap before (T0547)Q226 # TweakPsiPhi removed gap before (T0547)D494 # generation 6: best score out of 40: T0547.try1-opt2 222.84808 cost/residue, 1196 clashes 0.15393 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 3 / 11 = 0.27273 0.00937 ## JiggleSubtree 0 0 1 / 8 = 0.12500 0.00127 ## JiggleSegment 0 6 4 / 15 = 0.26667 0.00733 ## OptSubtree 0 0 0 / 9 = 0.00000 0.00000 ## OptSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 25 = 0.04000 0.00081 ## TweakPhiSubtree 2 14 11 / 27 = 0.40741 0.02602 ## TweakPhiSegment 0 11 9 / 21 = 0.42857 0.01814 ## TweakPsiSubtree 0 4 2 / 9 = 0.22222 0.01112 ## TweakPsiSegment 0 11 6 / 19 = 0.31579 0.01503 ## TweakPsiPhiSubtree 2 12 5 / 16 = 0.31250 0.00331 ## TweakPsiPhiSegment 3 5 2 / 10 = 0.20000 0.00270 ## TweakHbondSubtree 0 11 7 / 18 = 0.38889 0.00772 ## TweakHbondSegment 0 8 7 / 20 = 0.35000 0.01538 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 0 1 / 4 = 0.25000 0.00212 ## FixOmega 0 0 0 / 13 = 0.00000 0.00000 ## Backrub 6 14 5 / 17 = 0.29412 0.00584 ## BigBackrub 3 6 2 / 12 = 0.16667 0.01029 ## OneRotamer 0 34 11 / 67 = 0.16418 0.01242 ## ClashingRotamer 0 0 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 1 3 0 / 11 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 20 = 0.00000 0.00000 ## CloseGap 0 1 0 / 11 = 0.00000 0.00000 ## HealGap 0 5 2 / 32 = 0.06250 0.01341 ## MoveGap 0 1 0 / 12 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 14 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 12 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 12 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 58 = 0.00000 0.00000 ## CrossOver 0 0 0 / 8 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 14 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 10 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)W454 # TweakPsiPhi removed gap before (T0547)G455 # TweakPsiPhi removed gap before (T0547)I302 # TweakPhi removed gap before (T0547)Y279 # BackrubGuts cancelled, second residue peptide plane wrong length # Healed gap before (T0547)Y43 residual break only 0.044 # TweakPhi removed gap before (T0547)A121 # TweakPsiPhi removed gap before (T0547)D428 # TweakPsiPhi removed gap before (T0547)I570 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPhi removed gap before (T0547)S492 # TweakPhi removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)Y75 # TweakPsiPhi removed gap before (T0547)N528 # TweakPsiPhi removed gap before (T0547)F301 # TweakPhi removed gap before (T0547)E240 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)G78 # TweakPhi removed gap before (T0547)L97 # TweakPhi removed gap before (T0547)I254 # TweakPsiPhi removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)F392 # generation 7: best score out of 40: T0547.try1-opt2 222.75848 cost/residue, 1193 clashes 0.15366 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 4 / 16 = 0.25000 0.00724 ## JiggleSubtree 0 0 1 / 12 = 0.08333 0.00085 ## JiggleSegment 0 6 4 / 18 = 0.22222 0.00611 ## OptSubtree 0 0 0 / 9 = 0.00000 0.00000 ## OptSegment 0 1 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 26 = 0.03846 0.00078 ## TweakPhiSubtree 2 16 12 / 32 = 0.37500 0.02210 ## TweakPhiSegment 0 18 11 / 31 = 0.35484 0.02039 ## TweakPsiSubtree 0 4 2 / 10 = 0.20000 0.01000 ## TweakPsiSegment 0 13 6 / 21 = 0.28571 0.01360 ## TweakPsiPhiSubtree 2 14 8 / 19 = 0.42105 0.00488 ## TweakPsiPhiSegment 3 6 3 / 14 = 0.21429 0.00205 ## TweakHbondSubtree 1 11 7 / 19 = 0.36842 0.00731 ## TweakHbondSegment 0 9 7 / 22 = 0.31818 0.01398 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 0 1 / 4 = 0.25000 0.00212 ## FixOmega 0 1 1 / 15 = 0.06667 0.00312 ## Backrub 7 16 7 / 20 = 0.35000 0.00753 ## BigBackrub 4 8 2 / 17 = 0.11765 0.00726 ## OneRotamer 0 37 15 / 76 = 0.19737 0.01365 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 1 3 0 / 14 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 23 = 0.00000 0.00000 ## CloseGap 0 1 0 / 13 = 0.00000 0.00000 ## HealGap 0 5 2 / 36 = 0.05556 0.01192 ## MoveGap 0 1 0 / 13 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 19 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 13 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 14 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 67 = 0.00000 0.00000 ## CrossOver 0 0 0 / 11 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 14 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 11 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)F498 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)R402 # TweakPsiPhi removed gap before (T0547)Y255 # TweakPsiPhi removed gap before (T0547)C22 # TweakPhi removed gap before (T0547)E406 # TweakPsiPhi removed gap before (T0547)D602 # TweakPhi removed gap before (T0547)N152 # TweakPsiSubtree removed gap before (T0547)A276 # TweakPhi removed gap before (T0547)G133 # TweakPsiSubtree removed gap before (T0547)D316 # TweakPsiSubtree removed gap before (T0547)D41 # TweakPhi removed gap before (T0547)G274 # TweakPhi removed gap before (T0547)N123 # TweakPhi removed gap before (T0547)G133 # TweakPsiSubtree removed gap before (T0547)K304 # TweakPsiPhi removed gap before (T0547)F301 # TweakPhi removed gap before (T0547)D168 # Closed gap before (T0547)L593 # TweakPhi removed gap before (T0547)V87 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L523 # generation 8: best score out of 40: T0547.try1-opt2 222.56317 cost/residue, 1190 clashes 0.15330 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 5 / 19 = 0.26316 0.01637 ## JiggleSubtree 0 0 1 / 14 = 0.07143 0.00073 ## JiggleSegment 0 6 4 / 19 = 0.21053 0.00579 ## OptSubtree 0 0 0 / 12 = 0.00000 0.00000 ## OptSegment 0 1 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 28 = 0.03571 0.00072 ## TweakPhiSubtree 2 21 14 / 40 = 0.35000 0.01817 ## TweakPhiSegment 0 21 13 / 35 = 0.37143 0.01841 ## TweakPsiSubtree 0 5 2 / 13 = 0.15385 0.00770 ## TweakPsiSegment 0 14 7 / 23 = 0.30435 0.01305 ## TweakPsiPhiSubtree 2 15 8 / 20 = 0.40000 0.00463 ## TweakPsiPhiSegment 3 8 5 / 18 = 0.27778 0.00390 ## TweakHbondSubtree 1 11 7 / 20 = 0.35000 0.00694 ## TweakHbondSegment 1 11 7 / 24 = 0.29167 0.01281 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 1 2 / 5 = 0.40000 0.00445 ## FixOmega 0 1 1 / 19 = 0.05263 0.00246 ## Backrub 7 18 7 / 23 = 0.30435 0.00655 ## BigBackrub 6 9 3 / 20 = 0.15000 0.00681 ## OneRotamer 0 43 19 / 90 = 0.21111 0.01285 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 1 3 0 / 14 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 27 = 0.00000 0.00000 ## CloseGap 0 1 0 / 15 = 0.00000 0.00000 ## HealGap 0 6 2 / 44 = 0.04545 0.00975 ## MoveGap 0 1 0 / 15 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 20 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 18 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 15 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 73 = 0.00000 0.00000 ## CrossOver 0 0 0 / 12 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 14 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 11 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)A119 # TweakPhi removed gap before (T0547)N585 # TweakPhi removed gap before (T0547)S579 # TweakPhi removed gap before (T0547)E308 # TweakPsiPhi removed gap before (T0547)F227 # TweakPsiSubtree removed gap before (T0547)G192 # TweakPsiSubtree removed gap before (T0547)A405 # TweakPhi removed gap before (T0547)Y363 # TweakPsiPhi removed gap before (T0547)A518 # TweakPsiSubtree removed gap before (T0547)D486 # TweakPsiPhi removed gap before (T0547)H500 # TweakPhi removed gap before (T0547)Y63 # TweakPhi removed gap before (T0547)K260 # TweakPsiSubtree removed gap before (T0547)D466 # TweakPsiSubtree removed gap before (T0547)T390 # TweakPhi removed gap before (T0547)L224 # TweakPsiSubtree removed gap before (T0547)Q448 # TweakPsiPhi removed gap before (T0547)N65 # TweakPsiSubtree removed gap before (T0547)G133 # TweakPsiPhi removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)D586 # generation 9: best score out of 40: T0547.try1-opt2 222.56317 cost/residue, 1190 clashes 0.15330 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 5 / 23 = 0.21739 0.01353 ## JiggleSubtree 0 0 1 / 14 = 0.07143 0.00073 ## JiggleSegment 0 7 5 / 23 = 0.21739 0.00895 ## OptSubtree 0 0 0 / 13 = 0.00000 0.00000 ## OptSegment 0 1 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 17 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 30 = 0.03333 0.00067 ## TweakPhiSubtree 2 23 15 / 43 = 0.34884 0.01691 ## TweakPhiSegment 0 28 15 / 43 = 0.34884 0.01564 ## TweakPsiSubtree 0 5 2 / 15 = 0.13333 0.00667 ## TweakPsiSegment 0 16 9 / 29 = 0.31034 0.01490 ## TweakPsiPhiSubtree 2 16 8 / 22 = 0.36364 0.00421 ## TweakPsiPhiSegment 3 11 6 / 21 = 0.28571 0.00346 ## TweakHbondSubtree 1 12 8 / 22 = 0.36364 0.00695 ## TweakHbondSegment 1 13 8 / 27 = 0.29630 0.01286 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 1 2 / 8 = 0.25000 0.00278 ## FixOmega 0 1 2 / 24 = 0.08333 0.00249 ## Backrub 7 19 7 / 26 = 0.26923 0.00579 ## BigBackrub 6 12 4 / 26 = 0.15385 0.00555 ## OneRotamer 0 48 23 / 100 = 0.23000 0.01723 ## ClashingRotamer 0 0 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 14 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 29 = 0.00000 0.00000 ## CloseGap 0 1 0 / 18 = 0.00000 0.00000 ## HealGap 0 6 2 / 46 = 0.04348 0.00933 ## MoveGap 0 1 0 / 19 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 27 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 19 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 17 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 77 = 0.00000 0.00000 ## CrossOver 0 0 0 / 12 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 14 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 11 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)Y491 # TweakPsiPhi removed gap before (T0547)K196 # TweakPhi removed gap before (T0547)I254 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPsiSubtree removed gap before (T0547)H233 # TweakPhi removed gap before (T0547)K222 # TweakPhi removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)Y545 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiPhi removed gap before (T0547)L97 # TweakPsiPhi removed gap before (T0547)L515 # TweakPhi removed gap before (T0547)L48 # TweakPhi removed gap before (T0547)E115 # TweakPhi removed gap before (T0547)Q56 # TweakPsiSubtree removed gap before (T0547)E470 # TweakPhi removed gap before (T0547)G64 # TweakPsiSubtree removed gap before (T0547)Y290 # TweakPhi removed gap before (T0547)N18 # TweakPsiSubtree removed gap before (T0547)L385 # TweakPsiPhi removed gap before (T0547)N270 # generation 10: best score out of 40: T0547.try1-opt2 222.46481 cost/residue, 1189 clashes 0.15322 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 6 / 26 = 0.23077 0.01242 ## JiggleSubtree 0 1 2 / 16 = 0.12500 0.00306 ## JiggleSegment 0 8 5 / 29 = 0.17241 0.00710 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 1 0 / 20 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 32 = 0.03125 0.00063 ## TweakPhiSubtree 2 25 15 / 49 = 0.30612 0.01484 ## TweakPhiSegment 1 30 18 / 47 = 0.38298 0.01809 ## TweakPsiSubtree 0 5 2 / 16 = 0.12500 0.00625 ## TweakPsiSegment 0 19 11 / 35 = 0.31429 0.01288 ## TweakPsiPhiSubtree 2 17 9 / 23 = 0.39130 0.00545 ## TweakPsiPhiSegment 3 13 7 / 25 = 0.28000 0.00297 ## TweakHbondSubtree 1 13 9 / 27 = 0.33333 0.00645 ## TweakHbondSegment 1 14 9 / 28 = 0.32143 0.01251 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 1 2 / 8 = 0.25000 0.00278 ## FixOmega 1 1 2 / 27 = 0.07407 0.00221 ## Backrub 7 21 7 / 29 = 0.24138 0.00519 ## BigBackrub 6 14 6 / 29 = 0.20690 0.00578 ## OneRotamer 0 53 24 / 111 = 0.21622 0.01589 ## ClashingRotamer 0 0 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 14 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 29 = 0.00000 0.00000 ## CloseGap 0 1 0 / 19 = 0.00000 0.00000 ## HealGap 0 6 2 / 51 = 0.03922 0.00842 ## MoveGap 0 1 0 / 23 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 29 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 21 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 22 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 86 = 0.00000 0.00000 ## CrossOver 0 0 0 / 13 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 15 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 11 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)M229 # TweakPsiPhi removed gap before (T0547)Y440 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F453 # TweakPhi removed gap before (T0547)Q89 # TweakPhi removed gap before (T0547)S445 # TweakPsiPhi removed gap before (T0547)N13 # TweakPsiPhi removed gap before (T0547)S188 # TweakPhi removed gap before (T0547)E125 # TweakPhi removed gap before (T0547)E361 # TweakPsiPhi removed gap before (T0547)H329 # TweakPhi removed gap before (T0547)A553 # TweakPhi removed gap before (T0547)K423 # TweakPsiPhi removed gap before (T0547)I388 # TweakPhi removed gap before (T0547)I538 # TweakPsiSubtree removed gap before (T0547)L411 # TweakPsiSubtree removed gap before (T0547)N105 # TweakPsiSubtree removed gap before (T0547)I16 # TweakPsiSubtree removed gap before (T0547)L275 # TweakPhi removed gap before (T0547)V98 # generation 11: best score out of 40: T0547.try1-opt2 222.30087 cost/residue, 1184 clashes 0.15322 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 7 / 30 = 0.23333 0.01122 ## JiggleSubtree 0 2 2 / 20 = 0.10000 0.00245 ## JiggleSegment 0 8 5 / 33 = 0.15152 0.00624 ## OptSubtree 0 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 1 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 33 = 0.03030 0.00061 ## TweakPhiSubtree 2 26 16 / 52 = 0.30769 0.01755 ## TweakPhiSegment 1 35 22 / 53 = 0.41509 0.01824 ## TweakPsiSubtree 0 9 3 / 20 = 0.15000 0.00655 ## TweakPsiSegment 0 19 11 / 36 = 0.30556 0.01253 ## TweakPsiPhiSubtree 2 19 10 / 26 = 0.38462 0.00931 ## TweakPsiPhiSegment 3 15 8 / 27 = 0.29630 0.00278 ## TweakHbondSubtree 1 16 11 / 32 = 0.34375 0.00697 ## TweakHbondSegment 1 17 10 / 32 = 0.31250 0.01189 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 1 2 / 8 = 0.25000 0.00278 ## FixOmega 1 1 2 / 29 = 0.06897 0.00206 ## Backrub 7 22 7 / 31 = 0.22581 0.00486 ## BigBackrub 7 15 6 / 32 = 0.18750 0.00523 ## OneRotamer 0 59 28 / 122 = 0.22951 0.01796 ## ClashingRotamer 0 0 0 / 22 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 15 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 29 = 0.00000 0.00000 ## CloseGap 0 1 0 / 19 = 0.00000 0.00000 ## HealGap 0 6 2 / 53 = 0.03774 0.00810 ## MoveGap 0 1 0 / 24 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 33 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 26 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 24 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 98 = 0.00000 0.00000 ## CrossOver 0 0 0 / 14 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 15 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 11 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)T239 # TweakPsiPhi removed gap before (T0547)M571 # TweakPhi removed gap before (T0547)L391 # TweakPhi removed gap before (T0547)F204 # TweakPsiSubtree removed gap before (T0547)K86 # TweakPsiPhi removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)A416 # TweakPsiSubtree removed gap before (T0547)D564 # TweakPsiPhi removed gap before (T0547)E162 # TweakPhi removed gap before (T0547)K203 # TweakPsiSubtree removed gap before (T0547)L303 # TweakPhi removed gap before (T0547)I567 # TweakPhi removed gap before (T0547)K36 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K607 # TweakPsiSubtree removed gap before (T0547)A536 # TweakPsiPhi removed gap before (T0547)G101 # TweakPhi removed gap before (T0547)E552 # TweakPsiPhi removed gap before (T0547)I382 # TweakPhi removed gap before (T0547)S287 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)M571 # TweakPsiSubtree removed gap before (T0547)Q437 # generation 12: best score out of 40: T0547.try1-opt2 222.16805 cost/residue, 1183 clashes 0.15322 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 7 / 33 = 0.21212 0.01020 ## JiggleSubtree 0 2 2 / 20 = 0.10000 0.00245 ## JiggleSegment 0 8 5 / 37 = 0.13514 0.00556 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 1 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 34 = 0.02941 0.00060 ## TweakPhiSubtree 2 27 17 / 56 = 0.30357 0.01752 ## TweakPhiSegment 1 38 23 / 59 = 0.38983 0.01640 ## TweakPsiSubtree 0 10 4 / 24 = 0.16667 0.00554 ## TweakPsiSegment 0 21 12 / 40 = 0.30000 0.01153 ## TweakPsiPhiSubtree 2 19 10 / 29 = 0.34483 0.00834 ## TweakPsiPhiSegment 3 18 10 / 31 = 0.32258 0.00465 ## TweakHbondSubtree 1 17 12 / 33 = 0.36364 0.00825 ## TweakHbondSegment 1 21 12 / 37 = 0.32432 0.01153 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 1 2 / 9 = 0.22222 0.00247 ## FixOmega 1 1 2 / 31 = 0.06452 0.00193 ## Backrub 8 24 7 / 35 = 0.20000 0.00430 ## BigBackrub 9 16 6 / 34 = 0.17647 0.00493 ## OneRotamer 0 66 34 / 137 = 0.24818 0.01789 ## ClashingRotamer 0 0 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 16 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 30 = 0.00000 0.00000 ## CloseGap 0 1 0 / 21 = 0.00000 0.00000 ## HealGap 0 6 2 / 56 = 0.03571 0.00766 ## MoveGap 0 1 0 / 27 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 34 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 30 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 24 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 104 = 0.00000 0.00000 ## CrossOver 0 0 0 / 15 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 15 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 13 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)E158 # TweakPsiPhi removed gap before (T0547)K17 # TweakPsiPhi removed gap before (T0547)L515 # TweakPhi removed gap before (T0547)D586 # TweakPsiPhi removed gap before (T0547)K27 # TweakPhi removed gap before (T0547)A268 # TweakPhi removed gap before (T0547)N289 # TweakPsiPhi removed gap before (T0547)V35 # TweakPsiPhi removed gap before (T0547)L606 # TweakPsiSubtree removed gap before (T0547)G252 # TweakPhi removed gap before (T0547)G181 # TweakPsiPhi removed gap before (T0547)V98 # TweakPhi removed gap before (T0547)R467 # TweakPsiPhi removed gap before (T0547)L362 # TweakPsiPhi removed gap before (T0547)F340 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N297 # TweakPsiPhi removed gap before (T0547)Y75 # TweakPsiSubtree removed gap before (T0547)L391 # generation 13: best score out of 40: T0547.try1-opt2 222.14771 cost/residue, 1172 clashes 0.15429 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 8 / 36 = 0.22222 0.00952 ## JiggleSubtree 0 2 2 / 20 = 0.10000 0.00245 ## JiggleSegment 0 11 7 / 42 = 0.16667 0.01274 ## OptSubtree 0 0 0 / 19 = 0.00000 0.00000 ## OptSegment 0 1 0 / 31 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 36 = 0.02778 0.00056 ## TweakPhiSubtree 2 29 17 / 59 = 0.28814 0.01663 ## TweakPhiSegment 1 41 24 / 63 = 0.38095 0.01549 ## TweakPsiSubtree 0 10 4 / 25 = 0.16000 0.00532 ## TweakPsiSegment 0 22 13 / 42 = 0.30952 0.01189 ## TweakPsiPhiSubtree 3 24 14 / 37 = 0.37838 0.00803 ## TweakPsiPhiSegment 4 19 11 / 33 = 0.33333 0.00461 ## TweakHbondSubtree 1 17 12 / 33 = 0.36364 0.00825 ## TweakHbondSegment 2 24 14 / 44 = 0.31818 0.01128 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 1 2 / 12 = 0.16667 0.00185 ## FixOmega 1 1 2 / 34 = 0.05882 0.00176 ## Backrub 9 27 8 / 39 = 0.20513 0.00448 ## BigBackrub 9 16 6 / 34 = 0.17647 0.00493 ## OneRotamer 0 68 34 / 149 = 0.22819 0.01645 ## ClashingRotamer 0 0 0 / 24 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 16 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 34 = 0.00000 0.00000 ## CloseGap 0 1 0 / 23 = 0.00000 0.00000 ## HealGap 0 7 3 / 61 = 0.04918 0.00707 ## MoveGap 0 1 0 / 27 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 37 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 32 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 25 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 116 = 0.00000 0.00000 ## CrossOver 0 0 0 / 15 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 17 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 13 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)A251 # TweakPhi removed gap before (T0547)I16 # TweakPsiPhi removed gap before (T0547)I62 # TweakPsiPhi removed gap before (T0547)L182 # TweakPsiSubtree removed gap before (T0547)P52 # TweakPsiSubtree removed gap before (T0547)G517 # TweakPsiSubtree removed gap before (T0547)L446 # TweakPsiPhi removed gap before (T0547)I538 # TweakPhi removed gap before (T0547)G42 # TweakPhi removed gap before (T0547)T473 # TweakPsiPhi removed gap before (T0547)N425 # TweakPhi removed gap before (T0547)A553 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N603 # TweakPsiSubtree removed gap before (T0547)K267 # TweakPsiPhi removed gap before (T0547)H527 # TweakPsiSubtree removed gap before (T0547)L211 # TweakPhi removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)A189 # TweakPhi removed gap before (T0547)L419 # TweakPsiPhi removed gap before (T0547)L266 # TweakPsiPhi removed gap before (T0547)T531 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)I540 # TweakPsiSubtree removed gap before (T0547)E376 # TweakPhi removed gap before (T0547)L391 # TweakPsiSubtree removed gap before (T0547)G126 # TweakPhi removed gap before (T0547)L511 # generation 14: best score out of 40: T0547.try1-opt2 222.03395 cost/residue, 1169 clashes 0.15342 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 19 11 / 43 = 0.25581 0.00839 ## JiggleSubtree 0 2 2 / 23 = 0.08696 0.00213 ## JiggleSegment 0 14 9 / 47 = 0.19149 0.01543 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 1 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 36 = 0.02778 0.00056 ## TweakPhiSubtree 2 35 19 / 67 = 0.28358 0.01760 ## TweakPhiSegment 2 43 26 / 66 = 0.39394 0.01498 ## TweakPsiSubtree 0 11 4 / 28 = 0.14286 0.00475 ## TweakPsiSegment 0 22 14 / 49 = 0.28571 0.01019 ## TweakPsiPhiSubtree 3 27 16 / 43 = 0.37209 0.00742 ## TweakPsiPhiSegment 4 20 12 / 34 = 0.35294 0.00617 ## TweakHbondSubtree 1 18 12 / 37 = 0.32432 0.00736 ## TweakHbondSegment 2 24 14 / 47 = 0.29787 0.01056 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 1 2 / 12 = 0.16667 0.00185 ## FixOmega 1 1 2 / 36 = 0.05556 0.00166 ## Backrub 11 29 9 / 41 = 0.21951 0.00501 ## BigBackrub 9 17 7 / 37 = 0.18919 0.00516 ## OneRotamer 0 71 34 / 160 = 0.21250 0.01532 ## ClashingRotamer 0 0 0 / 24 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 17 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 36 = 0.00000 0.00000 ## CloseGap 0 1 0 / 23 = 0.00000 0.00000 ## HealGap 0 7 3 / 63 = 0.04762 0.00685 ## MoveGap 0 1 0 / 30 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 39 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 29 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 38 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 28 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 121 = 0.00000 0.00000 ## CrossOver 0 0 0 / 18 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 17 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 13 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)D7 # TweakPhi removed gap before (T0547)V82 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPsiSubtree removed gap before (T0547)L391 # TweakPsiPhi removed gap before (T0547)G455 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)F66 # TweakPsiSubtree removed gap before (T0547)P335 # Closed gap before (T0547)L593 # TweakPsiPhi removed gap before (T0547)N13 # TweakPsiSubtree removed gap before (T0547)F453 # TweakPsiPhi removed gap before (T0547)K171 # TweakPsiPhi removed gap before (T0547)F93 # TweakPhi removed gap before (T0547)L596 # TweakPhi removed gap before (T0547)I567 # TweakPsiPhi removed gap before (T0547)A69 # TweakPhi removed gap before (T0547)S475 # TweakPsiPhi removed gap before (T0547)N305 # TweakPhi removed gap before (T0547)E314 # TweakPhi removed gap before (T0547)Y363 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPhi removed gap before (T0547)R183 # TweakPsiSubtree removed gap before (T0547)D103 # TweakPsiPhi removed gap before (T0547)L160 # TweakPhi removed gap before (T0547)L394 # TweakPsiSubtree removed gap before (T0547)I388 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)F514 # TweakPhi removed gap before (T0547)F324 # TweakPhi removed gap before (T0547)D364 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L223 # TweakPsiPhi removed gap before (T0547)D41 # TweakPhi removed gap before (T0547)G512 # TweakPsiPhi removed gap before (T0547)F232 # TweakPhi removed gap before (T0547)E138 # TweakPhi removed gap before (T0547)D602 # generation 15: best score out of 40: T0547.try1-opt2 221.98160 cost/residue, 1178 clashes 0.15331 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 20 12 / 46 = 0.26087 0.00819 ## JiggleSubtree 0 2 2 / 23 = 0.08696 0.00213 ## JiggleSegment 0 14 9 / 54 = 0.16667 0.01343 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 1 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 37 = 0.02703 0.00055 ## TweakPhiSubtree 2 39 20 / 75 = 0.26667 0.01598 ## TweakPhiSegment 2 48 29 / 74 = 0.39189 0.01409 ## TweakPsiSubtree 0 12 4 / 30 = 0.13333 0.00443 ## TweakPsiSegment 0 24 16 / 53 = 0.30189 0.01238 ## TweakPsiPhiSubtree 3 31 20 / 49 = 0.40816 0.00754 ## TweakPsiPhiSegment 4 22 14 / 40 = 0.35000 0.00623 ## TweakHbondSubtree 1 19 12 / 39 = 0.30769 0.00698 ## TweakHbondSegment 2 25 15 / 50 = 0.30000 0.01024 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 1 2 / 12 = 0.16667 0.00185 ## FixOmega 1 1 2 / 37 = 0.05405 0.00161 ## Backrub 15 31 11 / 43 = 0.25581 0.00480 ## BigBackrub 10 18 7 / 41 = 0.17073 0.00466 ## OneRotamer 0 73 34 / 170 = 0.20000 0.01442 ## ClashingRotamer 0 0 0 / 25 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 19 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 39 = 0.00000 0.00000 ## CloseGap 0 1 0 / 24 = 0.00000 0.00000 ## HealGap 0 7 3 / 68 = 0.04412 0.00634 ## MoveGap 0 1 0 / 31 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 41 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 41 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 29 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 129 = 0.00000 0.00000 ## CrossOver 0 0 0 / 18 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 17 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 13 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)I59 # TweakPsiSubtree removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)P533 # TweakPsiSubtree removed gap before (T0547)E213 # TweakPhi removed gap before (T0547)H233 # TweakPsiSubtree removed gap before (T0547)Y279 # TweakPsiPhi removed gap before (T0547)N253 # TweakPhi removed gap before (T0547)R323 # TweakPhi removed gap before (T0547)L292 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)S188 # TweakPhi removed gap before (T0547)V331 # TweakPsiPhi removed gap before (T0547)K44 # TweakPhi removed gap before (T0547)I153 # TweakPsiSubtree removed gap before (T0547)L394 # TweakPsiPhi removed gap before (T0547)Y90 # TweakPsiPhi removed gap before (T0547)D466 # TweakPhi removed gap before (T0547)S197 # generation 16: best score out of 40: T0547.try1-opt2 221.85501 cost/residue, 1158 clashes 0.15371 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 23 14 / 51 = 0.27451 0.00818 ## JiggleSubtree 0 3 3 / 25 = 0.12000 0.01385 ## JiggleSegment 0 16 11 / 62 = 0.17742 0.01501 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 1 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 26 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 41 = 0.02439 0.00049 ## TweakPhiSubtree 2 41 21 / 79 = 0.26582 0.01585 ## TweakPhiSegment 2 50 30 / 79 = 0.37975 0.01394 ## TweakPsiSubtree 0 13 4 / 32 = 0.12500 0.00416 ## TweakPsiSegment 0 26 18 / 56 = 0.32143 0.01271 ## TweakPsiPhiSubtree 4 33 20 / 52 = 0.38462 0.00711 ## TweakPsiPhiSegment 5 24 14 / 43 = 0.32558 0.00579 ## TweakHbondSubtree 2 19 12 / 41 = 0.29268 0.00664 ## TweakHbondSegment 2 27 15 / 52 = 0.28846 0.00984 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 3 3 / 14 = 0.21429 0.00340 ## FixOmega 1 1 2 / 37 = 0.05405 0.00161 ## Backrub 15 32 12 / 46 = 0.26087 0.00467 ## BigBackrub 11 18 7 / 42 = 0.16667 0.00455 ## OneRotamer 0 78 38 / 181 = 0.20994 0.01574 ## ClashingRotamer 0 0 0 / 26 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 19 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 42 = 0.00000 0.00000 ## CloseGap 0 2 0 / 25 = 0.00000 0.00000 ## HealGap 0 7 3 / 73 = 0.04110 0.00591 ## MoveGap 0 1 0 / 33 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 44 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 41 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 30 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 142 = 0.00000 0.00000 ## CrossOver 0 0 0 / 20 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 19 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 14 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)A170 # TweakPhi removed gap before (T0547)H410 # Closed gap before (T0547)Y106 # TweakPhi removed gap before (T0547)I306 # TweakPhi removed gap before (T0547)Y509 # TweakPhi removed gap before (T0547)L139 # TweakPsiSubtree removed gap before (T0547)E548 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N11 # TweakPhi removed gap before (T0547)I254 # TweakPsiPhi removed gap before (T0547)V191 # TweakPhi removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)E320 # TweakPhi removed gap before (T0547)Y519 # TweakPsiSubtree removed gap before (T0547)I166 # TweakPhi removed gap before (T0547)G126 # TweakPhi removed gap before (T0547)G198 # TweakPhi removed gap before (T0547)S475 # TweakPsiPhi removed gap before (T0547)I6 # TweakPhi removed gap before (T0547)I407 # TweakPhi removed gap before (T0547)L560 # TweakPsiSubtree removed gap before (T0547)I540 # TweakPsiSubtree removed gap before (T0547)Q588 # TweakPhi removed gap before (T0547)N161 # TweakPsiSubtree removed gap before (T0547)D401 # TweakPsiPhi removed gap before (T0547)S381 # TweakPhi removed gap before (T0547)L468 # TweakPsiPhi removed gap before (T0547)G604 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K196 # TweakPhi removed gap before (T0547)G198 # TweakPhi removed gap before (T0547)I55 # TweakPsiPhi removed gap before (T0547)K57 # TweakPsiPhi removed gap before (T0547)A326 # TweakPsiSubtree removed gap before (T0547)L38 # TweakPsiSubtree removed gap before (T0547)K246 # TweakPsiPhi removed gap before (T0547)V442 # TweakPsiPhi removed gap before (T0547)K36 # TweakPsiSubtree removed gap before (T0547)P243 # TweakPhi removed gap before (T0547)L399 # TweakPhi removed gap before (T0547)W9 # TweakPhi removed gap before (T0547)E576 # TweakPhi removed gap before (T0547)T482 # generation 17: best score out of 40: T0547.try1-opt2 221.82675 cost/residue, 1157 clashes 0.15363 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 15 / 55 = 0.27273 0.00766 ## JiggleSubtree 0 4 4 / 33 = 0.12121 0.01168 ## JiggleSegment 0 17 12 / 66 = 0.18182 0.01586 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 1 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 27 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 43 = 0.02326 0.00047 ## TweakPhiSubtree 2 46 24 / 92 = 0.26087 0.01465 ## TweakPhiSegment 2 56 36 / 90 = 0.40000 0.01677 ## TweakPsiSubtree 0 14 5 / 33 = 0.15152 0.00418 ## TweakPsiSegment 0 31 23 / 66 = 0.34848 0.01506 ## TweakPsiPhiSubtree 5 34 21 / 53 = 0.39623 0.00743 ## TweakPsiPhiSegment 5 28 18 / 51 = 0.35294 0.00686 ## TweakHbondSubtree 2 20 12 / 42 = 0.28571 0.00648 ## TweakHbondSegment 3 28 16 / 57 = 0.28070 0.00936 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 3 3 / 15 = 0.20000 0.00317 ## FixOmega 1 1 2 / 37 = 0.05405 0.00161 ## Backrub 15 32 12 / 47 = 0.25532 0.00457 ## BigBackrub 13 19 7 / 44 = 0.15909 0.00434 ## OneRotamer 0 80 38 / 192 = 0.19792 0.01484 ## ClashingRotamer 0 0 0 / 26 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 19 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 43 = 0.00000 0.00000 ## CloseGap 0 2 0 / 26 = 0.00000 0.00000 ## HealGap 0 7 3 / 76 = 0.03947 0.00568 ## MoveGap 0 1 0 / 34 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 46 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 42 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 31 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 143 = 0.00000 0.00000 ## CrossOver 0 0 0 / 20 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 19 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 15 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Y519 # TweakPsiSubtree removed gap before (T0547)K283 # TweakPsiSubtree removed gap before (T0547)E138 # TweakPhi removed gap before (T0547)R50 # TweakPsiPhi removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)D428 # TweakPsiPhi removed gap before (T0547)I573 # TweakPsiPhi removed gap before (T0547)G92 # TweakPhi removed gap before (T0547)E548 # TweakPsiPhi removed gap before (T0547)F318 # TweakPhi removed gap before (T0547)M229 # TweakPsiPhi removed gap before (T0547)E213 # TweakPsiPhi removed gap before (T0547)E546 # TweakPsiSubtree removed gap before (T0547)T534 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E12 # TweakPhi removed gap before (T0547)G45 # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPsiPhi removed gap before (T0547)A553 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)D434 # TweakPsiSubtree removed gap before (T0547)I609 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPhi removed gap before (T0547)D469 # TweakPhi removed gap before (T0547)V502 # generation 18: best score out of 40: T0547.try1-opt2 221.57538 cost/residue, 1156 clashes 0.15282 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 15 / 56 = 0.26786 0.00752 ## JiggleSubtree 0 5 5 / 37 = 0.13514 0.01086 ## JiggleSegment 0 22 16 / 75 = 0.21333 0.02143 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 1 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 30 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 44 = 0.02273 0.00046 ## TweakPhiSubtree 3 47 25 / 95 = 0.26316 0.01428 ## TweakPhiSegment 2 60 37 / 95 = 0.38947 0.01642 ## TweakPsiSubtree 0 16 5 / 36 = 0.13889 0.00383 ## TweakPsiSegment 0 34 24 / 71 = 0.33803 0.01582 ## TweakPsiPhiSubtree 5 37 21 / 59 = 0.35593 0.00667 ## TweakPsiPhiSegment 5 30 19 / 54 = 0.35185 0.00658 ## TweakHbondSubtree 2 23 14 / 47 = 0.29787 0.00642 ## TweakHbondSegment 3 28 16 / 61 = 0.26230 0.00875 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 4 3 / 17 = 0.17647 0.00280 ## FixOmega 1 1 2 / 40 = 0.05000 0.00149 ## Backrub 17 33 12 / 48 = 0.25000 0.00448 ## BigBackrub 14 20 7 / 45 = 0.15556 0.00425 ## OneRotamer 0 80 38 / 201 = 0.18905 0.01417 ## ClashingRotamer 0 0 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 19 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 43 = 0.00000 0.00000 ## CloseGap 0 2 0 / 26 = 0.00000 0.00000 ## HealGap 0 7 3 / 81 = 0.03704 0.00533 ## MoveGap 0 1 0 / 36 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 49 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 44 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 31 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 147 = 0.00000 0.00000 ## CrossOver 0 0 0 / 22 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 21 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 17 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)P52 # TweakPsiSubtree removed gap before (T0547)Y295 # TweakPsiSubtree removed gap before (T0547)G322 # TweakPsiSubtree removed gap before (T0547)E158 # TweakPsiPhi removed gap before (T0547)N67 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPsiPhi removed gap before (T0547)N88 # TweakPhi removed gap before (T0547)E37 # TweakPsiPhi removed gap before (T0547)F498 # TweakPsiPhi removed gap before (T0547)N508 # TweakPhi removed gap before (T0547)E470 # TweakPhi removed gap before (T0547)G143 # TweakPsiSubtree removed gap before (T0547)V300 # TweakPsiPhi removed gap before (T0547)V436 # TweakPhi removed gap before (T0547)I369 # TweakPsiSubtree removed gap before (T0547)A431 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K95 # TweakPsiPhi removed gap before (T0547)D103 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I23 # generation 19: best score out of 40: T0547.try1-opt2 221.46355 cost/residue, 1151 clashes 0.15234 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 28 17 / 59 = 0.28814 0.00757 ## JiggleSubtree 0 6 6 / 41 = 0.14634 0.01355 ## JiggleSegment 0 26 18 / 85 = 0.21176 0.02086 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 1 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 34 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 45 = 0.02222 0.00045 ## TweakPhiSubtree 3 50 27 / 99 = 0.27273 0.01433 ## TweakPhiSegment 2 60 37 / 98 = 0.37755 0.01591 ## TweakPsiSubtree 0 17 5 / 39 = 0.12821 0.00354 ## TweakPsiSegment 0 36 26 / 76 = 0.34211 0.01773 ## TweakPsiPhiSubtree 7 39 22 / 63 = 0.34921 0.00631 ## TweakPsiPhiSegment 5 31 19 / 58 = 0.32759 0.00613 ## TweakHbondSubtree 2 24 14 / 49 = 0.28571 0.00616 ## TweakHbondSegment 3 30 18 / 66 = 0.27273 0.01024 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 4 3 / 19 = 0.15789 0.00251 ## FixOmega 1 1 2 / 43 = 0.04651 0.00139 ## Backrub 18 35 14 / 53 = 0.26415 0.00414 ## BigBackrub 15 20 7 / 47 = 0.14894 0.00407 ## OneRotamer 0 83 40 / 210 = 0.19048 0.01400 ## ClashingRotamer 0 0 0 / 30 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 20 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 44 = 0.00000 0.00000 ## CloseGap 0 2 0 / 27 = 0.00000 0.00000 ## HealGap 0 7 3 / 87 = 0.03448 0.00496 ## MoveGap 0 1 0 / 37 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 51 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 45 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 31 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 153 = 0.00000 0.00000 ## CrossOver 0 0 0 / 22 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 23 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 18 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)F227 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L224 # TweakPhi removed gap before (T0547)E376 # TweakPsiPhi removed gap before (T0547)L244 # TweakPsiSubtree removed gap before (T0547)G610 # TweakPhi removed gap before (T0547)K267 # TweakPhi removed gap before (T0547)Y509 # BackrubGuts cancelled---proline or break # Closed gap before (T0547)L593 # TweakPsiPhi removed gap before (T0547)A251 # TweakPhi removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)E158 # TweakPsiSubtree removed gap before (T0547)I573 # TweakPsiSubtree removed gap before (T0547)K57 # TweakPhi removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)S236 # TweakPhi removed gap before (T0547)E115 # TweakPhi removed gap before (T0547)Y295 # TweakPhi removed gap before (T0547)L468 # TweakPhi removed gap before (T0547)G19 # TweakPsiSubtree removed gap before (T0547)E488 # TweakPhi removed gap before (T0547)D383 # TweakPhi removed gap before (T0547)V516 # generation 20: best score out of 40: T0547.try1-opt2 221.44664 cost/residue, 1150 clashes 0.15234 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 29 17 / 60 = 0.28333 0.00745 ## JiggleSubtree 0 8 6 / 44 = 0.13636 0.01263 ## JiggleSegment 0 29 20 / 94 = 0.21277 0.02019 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 1 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 28 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 34 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 46 = 0.02174 0.00044 ## TweakPhiSubtree 3 55 28 / 108 = 0.25926 0.01321 ## TweakPhiSegment 2 62 37 / 102 = 0.36275 0.01529 ## TweakPsiSubtree 0 18 6 / 42 = 0.14286 0.00334 ## TweakPsiSegment 0 39 27 / 84 = 0.32143 0.01659 ## TweakPsiPhiSubtree 7 40 23 / 64 = 0.35938 0.00626 ## TweakPsiPhiSegment 5 31 20 / 59 = 0.33898 0.00660 ## TweakHbondSubtree 2 24 14 / 51 = 0.27451 0.00592 ## TweakHbondSegment 3 30 18 / 71 = 0.25352 0.00952 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 4 3 / 20 = 0.15000 0.00238 ## FixOmega 1 1 2 / 44 = 0.04545 0.00136 ## Backrub 19 39 16 / 58 = 0.27586 0.00431 ## BigBackrub 16 22 7 / 51 = 0.13725 0.00375 ## OneRotamer 0 89 42 / 223 = 0.18834 0.01328 ## ClashingRotamer 0 0 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 22 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 44 = 0.00000 0.00000 ## CloseGap 0 2 0 / 30 = 0.00000 0.00000 ## HealGap 0 7 3 / 92 = 0.03261 0.00469 ## MoveGap 0 1 0 / 37 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 51 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 51 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 31 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 156 = 0.00000 0.00000 ## CrossOver 0 0 0 / 22 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 23 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 18 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)F66 # TweakPhi removed gap before (T0547)L391 # TweakPsiSubtree removed gap before (T0547)G524 # TweakPhi removed gap before (T0547)L399 # TweakPhi removed gap before (T0547)L385 # TweakPsiSubtree removed gap before (T0547)A121 # TweakPsiSubtree removed gap before (T0547)L358 # TweakPsiSubtree removed gap before (T0547)E595 # TweakPhi removed gap before (T0547)E240 # TweakPsiPhi removed gap before (T0547)D41 # TweakPhi removed gap before (T0547)L54 # TweakPsiPhi removed gap before (T0547)M2 # TweakPhi removed gap before (T0547)I238 # TweakPhi removed gap before (T0547)L385 # TweakPsiSubtree removed gap before (T0547)K76 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPhi removed gap before (T0547)N459 # TweakPhi removed gap before (T0547)K506 # TweakPhi removed gap before (T0547)K423 # TweakPhi removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)Y366 # TweakPhi removed gap before (T0547)I157 # TweakPhi removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)G610 # TweakPsiPhi removed gap before (T0547)S381 # TweakPhi removed gap before (T0547)L100 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)P356 # TweakPsiPhi removed gap before (T0547)L217 # generation 21: best score out of 40: T0547.try1-opt2 221.31915 cost/residue, 1144 clashes 0.15147 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 29 17 / 60 = 0.28333 0.00745 ## JiggleSubtree 0 9 8 / 53 = 0.15094 0.01455 ## JiggleSegment 0 29 20 / 99 = 0.20202 0.01917 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 1 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 29 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 34 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 46 = 0.02174 0.00044 ## TweakPhiSubtree 3 58 30 / 114 = 0.26316 0.01267 ## TweakPhiSegment 3 69 43 / 112 = 0.38393 0.01974 ## TweakPsiSubtree 0 20 7 / 45 = 0.15556 0.00313 ## TweakPsiSegment 1 44 31 / 91 = 0.34066 0.01654 ## TweakPsiPhiSubtree 9 40 23 / 65 = 0.35385 0.00616 ## TweakPsiPhiSegment 8 32 21 / 64 = 0.32812 0.00616 ## TweakHbondSubtree 3 26 14 / 54 = 0.25926 0.00559 ## TweakHbondSegment 3 31 18 / 72 = 0.25000 0.00939 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 4 3 / 20 = 0.15000 0.00238 ## FixOmega 1 1 2 / 44 = 0.04545 0.00136 ## Backrub 20 40 17 / 61 = 0.27869 0.00413 ## BigBackrub 16 22 7 / 53 = 0.13208 0.00361 ## OneRotamer 0 93 43 / 239 = 0.17992 0.01262 ## ClashingRotamer 0 0 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 23 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 45 = 0.00000 0.00000 ## CloseGap 0 2 0 / 30 = 0.00000 0.00000 ## HealGap 0 7 3 / 94 = 0.03191 0.00459 ## MoveGap 0 1 0 / 39 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 53 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 53 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 34 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 161 = 0.00000 0.00000 ## CrossOver 0 0 0 / 22 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 24 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 21 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)T130 # TweakPsiPhi removed gap before (T0547)V502 # TweakPsiPhi removed gap before (T0547)F232 # TweakPsiPhi removed gap before (T0547)G143 # TweakPhi removed gap before (T0547)N404 # TweakPsiSubtree removed gap before (T0547)G133 # TweakPhi removed gap before (T0547)Y75 # TweakPsiSubtree removed gap before (T0547)D312 # TweakPhi removed gap before (T0547)L349 # TweakPsiSubtree removed gap before (T0547)N105 # TweakPhi removed gap before (T0547)D312 # TweakPsiSubtree removed gap before (T0547)Y366 # TweakPsiPhi removed gap before (T0547)E505 # TweakPsiPhi removed gap before (T0547)E250 # TweakPsiPhi removed gap before (T0547)N373 # TweakPsiPhi removed gap before (T0547)N65 # TweakPhi removed gap before (T0547)H187 # TweakPsiPhi removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)G42 # TweakPsiSubtree removed gap before (T0547)L399 # TweakPhi removed gap before (T0547)F514 # TweakPhi removed gap before (T0547)L399 # TweakPsiPhi removed gap before (T0547)N270 # TweakPhi removed gap before (T0547)L271 # TweakPsiSubtree removed gap before (T0547)D380 # TweakPhi removed gap before (T0547)K76 # TweakPsiSubtree removed gap before (T0547)A195 # TweakPsiSubtree removed gap before (T0547)E257 # generation 22: best score out of 40: T0547.try1-opt2 221.31633 cost/residue, 1144 clashes 0.15147 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 32 18 / 65 = 0.27692 0.00693 ## JiggleSubtree 0 9 8 / 58 = 0.13793 0.01330 ## JiggleSegment 0 29 20 / 105 = 0.19048 0.01807 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 1 0 / 45 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 29 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 34 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 48 = 0.02083 0.00042 ## TweakPhiSubtree 3 59 31 / 118 = 0.26271 0.01247 ## TweakPhiSegment 4 73 45 / 118 = 0.38136 0.01881 ## TweakPsiSubtree 0 20 7 / 48 = 0.14583 0.00293 ## TweakPsiSegment 1 49 35 / 99 = 0.35354 0.01605 ## TweakPsiPhiSubtree 9 43 26 / 69 = 0.37681 0.00596 ## TweakPsiPhiSegment 8 37 25 / 69 = 0.36232 0.00603 ## TweakHbondSubtree 3 29 15 / 58 = 0.25862 0.00561 ## TweakHbondSegment 3 33 20 / 75 = 0.26667 0.00938 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 6 4 / 23 = 0.17391 0.00225 ## FixOmega 1 1 2 / 45 = 0.04444 0.00133 ## Backrub 20 40 18 / 63 = 0.28571 0.00409 ## BigBackrub 16 22 7 / 53 = 0.13208 0.00361 ## OneRotamer 0 94 44 / 247 = 0.17814 0.01226 ## ClashingRotamer 0 0 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 24 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 47 = 0.00000 0.00000 ## CloseGap 0 2 0 / 31 = 0.00000 0.00000 ## HealGap 0 7 3 / 100 = 0.03000 0.00431 ## MoveGap 0 1 0 / 40 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 57 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 55 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 35 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 165 = 0.00000 0.00000 ## CrossOver 0 0 0 / 26 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 25 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 21 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)A214 # TweakPhi removed gap before (T0547)L48 # TweakPhi removed gap before (T0547)M261 # TweakPhi removed gap before (T0547)Y290 # TweakPhi removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)I556 # TweakPsiPhi removed gap before (T0547)F282 # TweakPsiSubtree removed gap before (T0547)Y255 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPsiSubtree removed gap before (T0547)G92 # TweakPhi removed gap before (T0547)T413 # Closed gap before (T0547)L593 # TweakPhi removed gap before (T0547)A405 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPhi removed gap before (T0547)Q437 # TweakPhi removed gap before (T0547)L292 # TweakPsiPhi removed gap before (T0547)Y295 # TweakPhi removed gap before (T0547)I55 # TweakPhi removed gap before (T0547)D586 # TweakPsiPhi removed gap before (T0547)V611 # TweakPhi removed gap before (T0547)Y25 # TweakPhi removed gap before (T0547)K587 # Closed gap before (T0547)L593 # TweakPsiSubtree removed gap before (T0547)N508 # TweakPhi removed gap before (T0547)L430 # TweakPsiPhi removed gap before (T0547)K27 # TweakPsiSubtree removed gap before (T0547)N132 # TweakPsiPhi removed gap before (T0547)L38 # TweakPhi removed gap before (T0547)D103 # TweakPsiPhi removed gap before (T0547)G198 # TweakPhi removed gap before (T0547)D564 # TweakPhi removed gap before (T0547)H384 # TweakPhi removed gap before (T0547)T256 # TweakPhi removed gap before (T0547)N575 # TweakPsiPhi removed gap before (T0547)K203 # TweakPsiPhi removed gap before (T0547)K352 # generation 23: best score out of 40: T0547.try1-opt2 221.07239 cost/residue, 1136 clashes 0.15089 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 32 18 / 67 = 0.26866 0.00672 ## JiggleSubtree 0 10 9 / 69 = 0.13043 0.01198 ## JiggleSegment 0 29 20 / 108 = 0.18519 0.01757 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 1 0 / 45 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 29 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 34 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 51 = 0.01961 0.00040 ## TweakPhiSubtree 4 63 34 / 123 = 0.27642 0.01249 ## TweakPhiSegment 4 82 54 / 135 = 0.40000 0.01975 ## TweakPsiSubtree 0 20 7 / 50 = 0.14000 0.00281 ## TweakPsiSegment 1 51 36 / 104 = 0.34615 0.01531 ## TweakPsiPhiSubtree 9 45 28 / 73 = 0.38356 0.00571 ## TweakPsiPhiSegment 8 38 27 / 73 = 0.36986 0.00606 ## TweakHbondSubtree 3 29 15 / 60 = 0.25000 0.00542 ## TweakHbondSegment 3 36 22 / 80 = 0.27500 0.01044 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 6 4 / 24 = 0.16667 0.00216 ## FixOmega 1 1 2 / 48 = 0.04167 0.00124 ## Backrub 20 42 20 / 66 = 0.30303 0.00446 ## BigBackrub 16 22 7 / 55 = 0.12727 0.00347 ## OneRotamer 0 100 47 / 257 = 0.18288 0.01336 ## ClashingRotamer 0 0 0 / 36 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 25 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 50 = 0.00000 0.00000 ## CloseGap 0 2 0 / 34 = 0.00000 0.00000 ## HealGap 0 7 3 / 102 = 0.02941 0.00423 ## MoveGap 0 1 0 / 40 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 59 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 57 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 35 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 168 = 0.00000 0.00000 ## CrossOver 0 0 0 / 26 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 25 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 21 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)D3 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPsiPhi removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)E257 # TweakPsiSubtree removed gap before (T0547)A416 # TweakPsiSubtree removed gap before (T0547)G45 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPhi removed gap before (T0547)H532 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I193 # TweakPsiPhi removed gap before (T0547)I6 # TweakPsiPhi removed gap before (T0547)G322 # TweakPsiSubtree removed gap before (T0547)L408 # TweakPsiPhi removed gap before (T0547)A296 # TweakPsiSubtree removed gap before (T0547)Y75 # TweakPsiPhi removed gap before (T0547)T559 # TweakPhi removed gap before (T0547)V184 # TweakPhi removed gap before (T0547)R259 # TweakPsiSubtree removed gap before (T0547)G42 # TweakPhi removed gap before (T0547)V215 # TweakPsiPhi removed gap before (T0547)I556 # TweakPhi removed gap before (T0547)N289 # TweakPhi removed gap before (T0547)N425 # TweakPhi removed gap before (T0547)V522 # TweakPhi removed gap before (T0547)I407 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPhi removed gap before (T0547)V331 # TweakPhi removed gap before (T0547)I609 # TweakPsiPhi removed gap before (T0547)L339 # TweakPhi removed gap before (T0547)L560 # TweakPsiPhi removed gap before (T0547)G101 # TweakPhi removed gap before (T0547)K245 # generation 24: best score out of 40: T0547.try1-opt2 221.05002 cost/residue, 1135 clashes 0.15092 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 32 18 / 68 = 0.26471 0.00662 ## JiggleSubtree 0 13 10 / 75 = 0.13333 0.01121 ## JiggleSegment 0 29 20 / 111 = 0.18018 0.01709 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 1 0 / 45 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 29 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 36 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 52 = 0.01923 0.00039 ## TweakPhiSubtree 4 66 35 / 129 = 0.27132 0.01255 ## TweakPhiSegment 5 88 59 / 144 = 0.40972 0.02009 ## TweakPsiSubtree 0 21 8 / 52 = 0.15385 0.00274 ## TweakPsiSegment 1 56 39 / 115 = 0.33913 0.01514 ## TweakPsiPhiSubtree 11 48 31 / 78 = 0.39744 0.00625 ## TweakPsiPhiSegment 8 40 29 / 76 = 0.38158 0.00636 ## TweakHbondSubtree 3 30 16 / 63 = 0.25397 0.00547 ## TweakHbondSegment 3 38 23 / 86 = 0.26744 0.01140 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 6 4 / 25 = 0.16000 0.00207 ## FixOmega 1 1 2 / 49 = 0.04082 0.00122 ## Backrub 21 43 21 / 68 = 0.30882 0.00463 ## BigBackrub 16 23 8 / 57 = 0.14035 0.00532 ## OneRotamer 0 105 48 / 275 = 0.17455 0.01275 ## ClashingRotamer 0 0 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 26 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 52 = 0.00000 0.00000 ## CloseGap 0 2 0 / 36 = 0.00000 0.00000 ## HealGap 0 7 3 / 102 = 0.02941 0.00423 ## MoveGap 0 1 0 / 41 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 62 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 57 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 36 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 171 = 0.00000 0.00000 ## CrossOver 0 0 0 / 29 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 25 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 22 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)S202 # TweakPhi removed gap before (T0547)N541 # TweakPsiPhi removed gap before (T0547)L430 # TweakPsiPhi removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)G92 # BackrubGuts cancelled---proline or break # Closed gap before (T0547)L593 # TweakPsiPhi removed gap before (T0547)F73 # TweakPsiSubtree removed gap before (T0547)F530 # TweakPhi removed gap before (T0547)G92 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L292 # TweakPhi removed gap before (T0547)E294 # TweakPhi removed gap before (T0547)T482 # TweakPhi removed gap before (T0547)E225 # TweakPhi removed gap before (T0547)K353 # TweakPsiPhi removed gap before (T0547)E225 # TweakPsiSubtree removed gap before (T0547)L375 # TweakPsiPhi removed gap before (T0547)I23 # TweakPsiPhi removed gap before (T0547)F318 # TweakPsiSubtree removed gap before (T0547)N425 # TweakPhi removed gap before (T0547)I23 # TweakPsiPhi removed gap before (T0547)I166 # TweakPsiPhi removed gap before (T0547)H500 # TweakPsiSubtree removed gap before (T0547)I238 # TweakPhi removed gap before (T0547)D434 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I166 # TweakPhi removed gap before (T0547)H242 # TweakPhi removed gap before (T0547)L557 # generation 25: best score out of 40: T0547.try1-opt2 220.90434 cost/residue, 1123 clashes 0.15126 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 34 19 / 72 = 0.26389 0.00650 ## JiggleSubtree 0 14 10 / 81 = 0.12346 0.01038 ## JiggleSegment 0 32 24 / 122 = 0.19672 0.01952 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 1 0 / 46 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 32 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 38 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 53 = 0.01887 0.00038 ## TweakPhiSubtree 4 69 37 / 133 = 0.27820 0.01239 ## TweakPhiSegment 5 92 60 / 153 = 0.39216 0.01900 ## TweakPsiSubtree 0 21 8 / 53 = 0.15094 0.00269 ## TweakPsiSegment 1 58 40 / 118 = 0.33898 0.01599 ## TweakPsiPhiSubtree 11 51 32 / 81 = 0.39506 0.00626 ## TweakPsiPhiSegment 8 44 32 / 82 = 0.39024 0.00664 ## TweakHbondSubtree 3 30 16 / 63 = 0.25397 0.00547 ## TweakHbondSegment 3 39 24 / 88 = 0.27273 0.01160 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 7 4 / 26 = 0.15385 0.00199 ## FixOmega 1 1 2 / 52 = 0.03846 0.00115 ## Backrub 23 44 23 / 72 = 0.31944 0.00455 ## BigBackrub 17 25 9 / 62 = 0.14516 0.00518 ## OneRotamer 0 106 49 / 286 = 0.17133 0.01243 ## ClashingRotamer 0 0 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 27 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 53 = 0.00000 0.00000 ## CloseGap 0 2 0 / 38 = 0.00000 0.00000 ## HealGap 0 7 3 / 103 = 0.02913 0.00419 ## MoveGap 0 1 0 / 41 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 63 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 58 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 36 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 177 = 0.00000 0.00000 ## CrossOver 0 0 0 / 32 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 25 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 22 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)M450 # TweakPsiPhi removed gap before (T0547)L391 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A518 # TweakPsiPhi removed gap before (T0547)E26 # TweakPhi removed gap before (T0547)F498 # TweakPsiSubtree removed gap before (T0547)I317 # TweakPsiPhi removed gap before (T0547)I55 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)N221 # TweakPhi removed gap before (T0547)F232 # TweakPhi removed gap before (T0547)I241 # TweakPhi removed gap before (T0547)D484 # TweakPhi removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)D316 # TweakPsiSubtree removed gap before (T0547)E278 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPsiPhi removed gap before (T0547)A268 # TweakPsiPhi removed gap before (T0547)N179 # TweakPhi removed gap before (T0547)A405 # TweakPhi removed gap before (T0547)I573 # TweakPhi removed gap before (T0547)G42 # TweakPhi removed gap before (T0547)R70 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)M525 # TweakPhi removed gap before (T0547)T239 # TweakPhi removed gap before (T0547)A405 # TweakPsiSubtree removed gap before (T0547)E60 # TweakPsiPhi removed gap before (T0547)G512 # TweakPhi removed gap before (T0547)F301 # TweakPsiPhi removed gap before (T0547)I567 # TweakPhi removed gap before (T0547)I350 # generation 26: best score out of 40: T0547.try1-opt2 220.88237 cost/residue, 1124 clashes 0.15126 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 35 20 / 75 = 0.26667 0.00633 ## JiggleSubtree 0 15 11 / 85 = 0.12941 0.00993 ## JiggleSegment 0 32 24 / 131 = 0.18321 0.01818 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 1 0 / 46 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 32 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 39 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 55 = 0.01818 0.00037 ## TweakPhiSubtree 5 77 42 / 143 = 0.29371 0.01209 ## TweakPhiSegment 5 97 64 / 161 = 0.39752 0.01999 ## TweakPsiSubtree 0 22 8 / 57 = 0.14035 0.00250 ## TweakPsiSegment 1 60 42 / 120 = 0.35000 0.01630 ## TweakPsiPhiSubtree 11 53 32 / 84 = 0.38095 0.00603 ## TweakPsiPhiSegment 9 44 32 / 86 = 0.37209 0.00633 ## TweakHbondSubtree 3 31 17 / 66 = 0.25758 0.00542 ## TweakHbondSegment 3 41 26 / 91 = 0.28571 0.01217 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 7 4 / 26 = 0.15385 0.00199 ## FixOmega 1 1 2 / 54 = 0.03704 0.00111 ## Backrub 25 44 23 / 72 = 0.31944 0.00455 ## BigBackrub 18 27 10 / 66 = 0.15152 0.00512 ## OneRotamer 0 107 50 / 293 = 0.17065 0.01221 ## ClashingRotamer 0 0 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 27 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 59 = 0.00000 0.00000 ## CloseGap 0 2 0 / 39 = 0.00000 0.00000 ## HealGap 0 7 3 / 105 = 0.02857 0.00411 ## MoveGap 0 1 0 / 42 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 65 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 59 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 38 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 185 = 0.00000 0.00000 ## CrossOver 0 0 0 / 35 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 26 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 22 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)K260 # TweakPsiSubtree removed gap before (T0547)L118 # TweakPhi removed gap before (T0547)R288 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K367 # TweakPsiPhi removed gap before (T0547)I551 # TweakPhi removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)S403 # TweakPhi removed gap before (T0547)T209 # TweakPsiPhi removed gap before (T0547)S475 # TweakPsiSubtree removed gap before (T0547)L574 # TweakPhi removed gap before (T0547)V436 # TweakPhi removed gap before (T0547)R39 # TweakPhi removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)K267 # TweakPsiSubtree removed gap before (T0547)N284 # TweakPsiSubtree removed gap before (T0547)H500 # TweakPsiSubtree removed gap before (T0547)R467 # TweakPhi removed gap before (T0547)Q226 # TweakPhi removed gap before (T0547)F444 # TweakPhi removed gap before (T0547)A170 # TweakPsiSubtree removed gap before (T0547)P46 # TweakPsiSubtree removed gap before (T0547)S321 # TweakPsiSubtree removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)A127 # TweakPhi removed gap before (T0547)Y290 # TweakPhi removed gap before (T0547)L217 # TweakPhi removed gap before (T0547)Q309 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G64 # generation 27: best score out of 40: T0547.try1-opt2 220.65352 cost/residue, 1123 clashes 0.15115 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 35 20 / 75 = 0.26667 0.00633 ## JiggleSubtree 0 15 11 / 89 = 0.12360 0.00949 ## JiggleSegment 0 33 25 / 140 = 0.17857 0.01891 ## OptSubtree 0 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 1 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 32 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 40 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 57 = 0.01754 0.00036 ## TweakPhiSubtree 5 79 44 / 148 = 0.29730 0.01208 ## TweakPhiSegment 5 103 68 / 173 = 0.39306 0.01947 ## TweakPsiSubtree 0 23 9 / 59 = 0.15254 0.00341 ## TweakPsiSegment 1 61 43 / 127 = 0.33858 0.01553 ## TweakPsiPhiSubtree 12 54 33 / 86 = 0.38372 0.00595 ## TweakPsiPhiSegment 9 45 33 / 89 = 0.37079 0.00613 ## TweakHbondSubtree 3 32 17 / 68 = 0.25000 0.00526 ## TweakHbondSegment 3 49 29 / 102 = 0.28431 0.01139 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 8 5 / 27 = 0.18519 0.00233 ## FixOmega 1 1 2 / 56 = 0.03571 0.00107 ## Backrub 27 44 23 / 74 = 0.31081 0.00443 ## BigBackrub 18 28 10 / 69 = 0.14493 0.00490 ## OneRotamer 0 111 52 / 302 = 0.17219 0.01193 ## ClashingRotamer 0 0 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 3 3 0 / 27 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 60 = 0.00000 0.00000 ## CloseGap 0 2 0 / 39 = 0.00000 0.00000 ## HealGap 0 7 3 / 111 = 0.02703 0.00389 ## MoveGap 0 1 0 / 43 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 68 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 62 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 39 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 189 = 0.00000 0.00000 ## CrossOver 0 0 0 / 36 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 26 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 22 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)V436 # TweakPsiPhi removed gap before (T0547)H568 # TweakPhi removed gap before (T0547)R323 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)D312 # TweakPhi removed gap before (T0547)N328 # TweakPhi removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)F392 # TweakPsiPhi removed gap before (T0547)K99 # TweakPsiPhi removed gap before (T0547)L385 # TweakPhi removed gap before (T0547)F134 # TweakPsiSubtree removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)W454 # TweakPsiPhi removed gap before (T0547)E60 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)V516 # TweakPhi removed gap before (T0547)E535 # TweakPsiSubtree removed gap before (T0547)D452 # TweakPsiPhi removed gap before (T0547)F134 # TweakPsiPhi removed gap before (T0547)H187 # TweakPsiPhi removed gap before (T0547)Y122 # TweakPsiSubtree removed gap before (T0547)P451 # TweakPsiPhi removed gap before (T0547)I145 # TweakPsiPhi removed gap before (T0547)A330 # TweakPsiSubtree removed gap before (T0547)A195 # generation 28: best score out of 40: T0547.try1-opt2 220.64709 cost/residue, 1122 clashes 0.15118 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 37 21 / 78 = 0.26923 0.00646 ## JiggleSubtree 0 17 12 / 98 = 0.12245 0.01079 ## JiggleSegment 0 37 28 / 157 = 0.17834 0.01789 ## OptSubtree 0 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 1 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 35 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 41 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 58 = 0.01724 0.00035 ## TweakPhiSubtree 5 80 45 / 151 = 0.29801 0.01195 ## TweakPhiSegment 5 106 71 / 181 = 0.39227 0.01963 ## TweakPsiSubtree 0 23 10 / 62 = 0.16129 0.00328 ## TweakPsiSegment 1 63 45 / 130 = 0.34615 0.01582 ## TweakPsiPhiSubtree 12 57 35 / 90 = 0.38889 0.00688 ## TweakPsiPhiSegment 9 48 35 / 95 = 0.36842 0.00613 ## TweakHbondSubtree 3 33 18 / 70 = 0.25714 0.00514 ## TweakHbondSegment 3 49 29 / 107 = 0.27103 0.01086 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 8 5 / 27 = 0.18519 0.00233 ## FixOmega 1 1 2 / 56 = 0.03571 0.00107 ## Backrub 27 47 23 / 77 = 0.29870 0.00425 ## BigBackrub 20 28 10 / 71 = 0.14085 0.00476 ## OneRotamer 0 112 53 / 309 = 0.17152 0.01192 ## ClashingRotamer 0 0 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 3 3 0 / 30 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 61 = 0.00000 0.00000 ## CloseGap 0 2 0 / 40 = 0.00000 0.00000 ## HealGap 0 7 3 / 114 = 0.02632 0.00378 ## MoveGap 0 1 0 / 45 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 72 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 63 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 39 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 192 = 0.00000 0.00000 ## CrossOver 0 0 0 / 37 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 26 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 22 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)K245 # TweakPsiSubtree removed gap before (T0547)H233 # TweakPhi removed gap before (T0547)E158 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L420 # TweakPhi removed gap before (T0547)I193 # TweakPsiSubtree removed gap before (T0547)K415 # TweakPhi removed gap before (T0547)Q400 # TweakPhi removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)E376 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPhi removed gap before (T0547)R467 # TweakPsiPhi removed gap before (T0547)N61 # TweakPhi removed gap before (T0547)F392 # TweakPhi removed gap before (T0547)F93 # TweakPsiSubtree removed gap before (T0547)K27 # TweakPsiPhi removed gap before (T0547)N67 # TweakPhi removed gap before (T0547)A345 # TweakPhi removed gap before (T0547)I241 # TweakPhi removed gap before (T0547)N270 # TweakPhi removed gap before (T0547)K219 # TweakPhi removed gap before (T0547)V191 # TweakPhi removed gap before (T0547)H187 # TweakPhi removed gap before (T0547)D393 # TweakPsiSubtree removed gap before (T0547)L574 # TweakPhi removed gap before (T0547)K196 # TweakPsiSubtree removed gap before (T0547)T256 # TweakPhi removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)K414 # TweakPsiSubtree removed gap before (T0547)V436 # TweakPhi removed gap before (T0547)R288 # TweakPsiPhi removed gap before (T0547)Q520 # TweakPsiPhi removed gap before (T0547)N328 # TweakPsiPhi removed gap before (T0547)R185 # generation 29: best score out of 40: T0547.try1-opt2 220.58224 cost/residue, 1118 clashes 0.15165 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 37 21 / 78 = 0.26923 0.00646 ## JiggleSubtree 0 18 13 / 104 = 0.12500 0.01075 ## JiggleSegment 0 39 30 / 167 = 0.17964 0.01805 ## OptSubtree 0 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 1 0 / 48 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 35 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 41 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 59 = 0.01695 0.00034 ## TweakPhiSubtree 5 82 49 / 158 = 0.31013 0.01181 ## TweakPhiSegment 5 114 76 / 193 = 0.39378 0.02011 ## TweakPsiSubtree 0 24 10 / 65 = 0.15385 0.00313 ## TweakPsiSegment 1 66 49 / 139 = 0.35252 0.01562 ## TweakPsiPhiSubtree 13 61 35 / 97 = 0.36082 0.00638 ## TweakPsiPhiSegment 9 48 35 / 96 = 0.36458 0.00607 ## TweakHbondSubtree 3 36 19 / 76 = 0.25000 0.00477 ## TweakHbondSegment 4 51 29 / 114 = 0.25439 0.01019 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 8 5 / 27 = 0.18519 0.00233 ## FixOmega 1 1 2 / 57 = 0.03509 0.00105 ## Backrub 27 49 23 / 80 = 0.28750 0.00409 ## BigBackrub 21 29 10 / 73 = 0.13699 0.00463 ## OneRotamer 0 112 54 / 313 = 0.17252 0.01196 ## ClashingRotamer 0 0 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 3 4 0 / 32 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 62 = 0.00000 0.00000 ## CloseGap 0 2 0 / 43 = 0.00000 0.00000 ## HealGap 0 7 3 / 115 = 0.02609 0.00375 ## MoveGap 0 1 0 / 45 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 74 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 63 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 40 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 197 = 0.00000 0.00000 ## CrossOver 0 0 0 / 37 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 26 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 22 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)Q458 # TweakPhi removed gap before (T0547)W194 # TweakPhi removed gap before (T0547)T482 # TweakPhi removed gap before (T0547)N96 # TweakPsiSubtree removed gap before (T0547)A121 # TweakPsiSubtree removed gap before (T0547)L378 # TweakPhi removed gap before (T0547)N96 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A114 # TweakPsiPhi removed gap before (T0547)V442 # TweakPhi removed gap before (T0547)K135 # TweakPsiSubtree removed gap before (T0547)L108 # TweakPhi removed gap before (T0547)Y104 # TweakPsiPhi removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)E320 # TweakPhi removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)N284 # TweakPsiSubtree removed gap before (T0547)A330 # BackrubGuts cancelled---proline or break # generation 30: best score out of 40: T0547.try1-opt2 220.56804 cost/residue, 1118 clashes 0.15165 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 41 23 / 84 = 0.27381 0.00610 ## JiggleSubtree 0 19 14 / 109 = 0.12844 0.01074 ## JiggleSegment 0 42 32 / 183 = 0.17486 0.01718 ## OptSubtree 0 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 1 0 / 48 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 37 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 41 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 60 = 0.01667 0.00034 ## TweakPhiSubtree 5 83 51 / 161 = 0.31677 0.01181 ## TweakPhiSegment 5 118 80 / 200 = 0.40000 0.01979 ## TweakPsiSubtree 0 25 11 / 66 = 0.16667 0.00308 ## TweakPsiSegment 1 68 51 / 144 = 0.35417 0.01521 ## TweakPsiPhiSubtree 13 61 35 / 98 = 0.35714 0.00632 ## TweakPsiPhiSegment 10 49 36 / 98 = 0.36735 0.00651 ## TweakHbondSubtree 3 36 19 / 79 = 0.24051 0.00459 ## TweakHbondSegment 5 53 30 / 119 = 0.25210 0.00979 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 5 / 29 = 0.17241 0.00217 ## FixOmega 1 1 2 / 59 = 0.03390 0.00101 ## Backrub 28 51 25 / 84 = 0.29762 0.00408 ## BigBackrub 22 30 10 / 76 = 0.13158 0.00445 ## OneRotamer 0 112 54 / 322 = 0.16770 0.01163 ## ClashingRotamer 0 0 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 3 4 0 / 33 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 64 = 0.00000 0.00000 ## CloseGap 0 2 0 / 43 = 0.00000 0.00000 ## HealGap 0 7 3 / 116 = 0.02586 0.00372 ## MoveGap 0 1 0 / 45 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 79 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 65 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 40 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 205 = 0.00000 0.00000 ## CrossOver 0 1 0 / 39 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 26 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 23 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)R39 # TweakPhi removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)D501 # TweakPhi removed gap before (T0547)R323 # TweakPsiPhi removed gap before (T0547)F340 # TweakPsiPhi removed gap before (T0547)V584 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)F301 # TweakPsiPhi removed gap before (T0547)S287 # TweakPhi removed gap before (T0547)L258 # TweakPsiSubtree removed gap before (T0547)E125 # TweakPsiPhi removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)E346 # TweakPsiSubtree removed gap before (T0547)G199 # TweakPsiPhi removed gap before (T0547)L389 # TweakPhi removed gap before (T0547)K587 # TweakPhi removed gap before (T0547)N601 # TweakPsiSubtree removed gap before (T0547)K71 # TweakPsiSubtree removed gap before (T0547)K357 # TweakPsiPhi removed gap before (T0547)N270 # TweakPsiPhi removed gap before (T0547)K203 # TweakPsiSubtree removed gap before (T0547)N404 # TweakPsiPhi removed gap before (T0547)A121 # TweakPhi removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)G198 # TweakPsiPhi removed gap before (T0547)E338 # TweakPhi removed gap before (T0547)A110 # TweakPsiPhi removed gap before (T0547)A518 # TweakPsiPhi removed gap before (T0547)R39 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPsiPhi removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)Q89 # TweakPhi removed gap before (T0547)T559 # TweakPhi removed gap before (T0547)E457 # TweakPhi removed gap before (T0547)G159 # TweakPsiPhi removed gap before (T0547)W479 # TweakPhi removed gap before (T0547)N253 # TweakPhi removed gap before (T0547)R173 # generation 31: best score out of 40: T0547.try1-opt2 220.37402 cost/residue, 1126 clashes 0.15042 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 41 24 / 86 = 0.27907 0.00603 ## JiggleSubtree 0 20 14 / 114 = 0.12281 0.01027 ## JiggleSegment 0 42 32 / 190 = 0.16842 0.01654 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 1 0 / 49 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 39 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 42 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 62 = 0.01613 0.00033 ## TweakPhiSubtree 5 83 52 / 165 = 0.31515 0.01155 ## TweakPhiSegment 5 127 83 / 212 = 0.39151 0.01895 ## TweakPsiSubtree 0 26 12 / 69 = 0.17391 0.00639 ## TweakPsiSegment 1 72 54 / 151 = 0.35762 0.01603 ## TweakPsiPhiSubtree 15 66 37 / 105 = 0.35238 0.00598 ## TweakPsiPhiSegment 12 53 39 / 104 = 0.37500 0.00711 ## TweakHbondSubtree 3 36 20 / 80 = 0.25000 0.00455 ## TweakHbondSegment 5 55 31 / 124 = 0.25000 0.00957 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 5 / 32 = 0.15625 0.00197 ## FixOmega 1 1 2 / 60 = 0.03333 0.00100 ## Backrub 29 54 26 / 89 = 0.29213 0.00410 ## BigBackrub 22 30 10 / 77 = 0.12987 0.00439 ## OneRotamer 0 113 54 / 329 = 0.16413 0.01138 ## ClashingRotamer 1 0 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 3 4 0 / 34 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 66 = 0.00000 0.00000 ## CloseGap 0 2 0 / 43 = 0.00000 0.00000 ## HealGap 0 7 3 / 118 = 0.02542 0.00366 ## MoveGap 0 1 0 / 45 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 80 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 67 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 40 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 208 = 0.00000 0.00000 ## CrossOver 0 1 0 / 40 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 27 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 23 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E148 # TweakPsiPhi removed gap before (T0547)E552 # TweakPsiSubtree removed gap before (T0547)L85 # TweakPhi removed gap before (T0547)R185 # TweakPhi removed gap before (T0547)I241 # TweakPsiSubtree removed gap before (T0547)E386 # TweakPsiPhi removed gap before (T0547)L186 # TweakPhi removed gap before (T0547)A296 # TweakPsiSubtree removed gap before (T0547)A165 # TweakPsiSubtree removed gap before (T0547)A268 # TweakPsiSubtree removed gap before (T0547)G64 # TweakPhi removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)R323 # TweakPhi removed gap before (T0547)R183 # TweakPhi removed gap before (T0547)T130 # TweakPsiPhi removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)W479 # TweakPhi removed gap before (T0547)I212 # TweakPhi removed gap before (T0547)A119 # TweakPhi removed gap before (T0547)G133 # TweakPsiSubtree removed gap before (T0547)L511 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)D501 # TweakPhi removed gap before (T0547)H329 # TweakPhi removed gap before (T0547)I180 # TweakPsiSubtree removed gap before (T0547)N161 # TweakPsiPhi removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)G594 # TweakPsiPhi removed gap before (T0547)Q226 # TweakPhi removed gap before (T0547)K76 # TweakPsiPhi removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)N305 # generation 32: best score out of 40: T0547.try1-opt2 220.30695 cost/residue, 1115 clashes 0.15116 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 41 24 / 90 = 0.26667 0.00576 ## JiggleSubtree 0 20 14 / 120 = 0.11667 0.00975 ## JiggleSegment 0 42 32 / 197 = 0.16244 0.01596 ## OptSubtree 0 0 0 / 43 = 0.00000 0.00000 ## OptSegment 0 1 0 / 50 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 39 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 42 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 64 = 0.01562 0.00032 ## TweakPhiSubtree 6 84 52 / 168 = 0.30952 0.01134 ## TweakPhiSegment 5 134 87 / 225 = 0.38667 0.01809 ## TweakPsiSubtree 0 30 15 / 76 = 0.19737 0.00919 ## TweakPsiSegment 2 75 55 / 158 = 0.34810 0.01545 ## TweakPsiPhiSubtree 16 68 38 / 108 = 0.35185 0.00597 ## TweakPsiPhiSegment 13 56 41 / 109 = 0.37615 0.00718 ## TweakHbondSubtree 3 36 20 / 80 = 0.25000 0.00455 ## TweakHbondSegment 5 59 32 / 136 = 0.23529 0.00886 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 5 / 32 = 0.15625 0.00197 ## FixOmega 1 1 2 / 62 = 0.03226 0.00096 ## Backrub 30 55 26 / 91 = 0.28571 0.00401 ## BigBackrub 22 31 11 / 79 = 0.13924 0.00465 ## OneRotamer 0 115 55 / 337 = 0.16320 0.01129 ## ClashingRotamer 1 0 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 3 4 0 / 34 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 66 = 0.00000 0.00000 ## CloseGap 0 3 0 / 45 = 0.00000 0.00000 ## HealGap 0 7 3 / 121 = 0.02479 0.00356 ## MoveGap 0 1 0 / 46 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 81 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 44 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 68 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 42 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 211 = 0.00000 0.00000 ## CrossOver 0 1 0 / 40 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 27 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 23 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)K352 # TweakPsiSubtree removed gap before (T0547)Q237 # TweakPsiPhi removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)G322 # TweakPsiPhi removed gap before (T0547)L271 # TweakPsiSubtree removed gap before (T0547)V131 # TweakPsiSubtree removed gap before (T0547)P52 # TweakPhi removed gap before (T0547)E162 # TweakPsiSubtree removed gap before (T0547)N201 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPhi removed gap before (T0547)Q237 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)K582 # TweakPsiPhi removed gap before (T0547)W454 # TweakPhi removed gap before (T0547)D602 # TweakPsiPhi removed gap before (T0547)G610 # TweakPsiSubtree removed gap before (T0547)S475 # TweakPsiSubtree removed gap before (T0547)V184 # TweakPsiSubtree removed gap before (T0547)F204 # TweakPsiSubtree removed gap before (T0547)G77 # TweakPsiSubtree removed gap before (T0547)R173 # TweakPsiSubtree removed gap before (T0547)G111 # TweakPsiPhi removed gap before (T0547)A30 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPsiPhi removed gap before (T0547)I573 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)M229 # TweakPsiSubtree removed gap before (T0547)S368 # TweakPhi removed gap before (T0547)Q554 # TweakPhi removed gap before (T0547)L523 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiPhi removed gap before (T0547)E158 # TweakPhi removed gap before (T0547)E548 # TweakPhi removed gap before (T0547)V21 # TweakPsiPhi removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPsiPhi removed gap before (T0547)S341 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPhi removed gap before (T0547)A431 # TweakPsiSubtree removed gap before (T0547)K71 # TweakPsiSubtree removed gap before (T0547)E278 # TweakPhi removed gap before (T0547)I254 # generation 33: best score out of 40: T0547.try1-opt2 220.23164 cost/residue, 1119 clashes 0.15110 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 43 26 / 93 = 0.27957 0.00640 ## JiggleSubtree 0 21 15 / 123 = 0.12195 0.00995 ## JiggleSegment 0 42 32 / 203 = 0.15764 0.01548 ## OptSubtree 0 0 0 / 43 = 0.00000 0.00000 ## OptSegment 0 1 0 / 50 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 40 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 42 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 64 = 0.01562 0.00032 ## TweakPhiSubtree 7 84 53 / 171 = 0.30994 0.01115 ## TweakPhiSegment 5 138 91 / 234 = 0.38889 0.01809 ## TweakPsiSubtree 0 34 18 / 88 = 0.20455 0.00880 ## TweakPsiSegment 2 81 60 / 167 = 0.35928 0.01661 ## TweakPsiPhiSubtree 17 71 39 / 114 = 0.34211 0.00567 ## TweakPsiPhiSegment 13 60 41 / 114 = 0.35965 0.00686 ## TweakHbondSubtree 3 38 21 / 85 = 0.24706 0.00436 ## TweakHbondSegment 5 60 33 / 139 = 0.23741 0.00867 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 5 / 32 = 0.15625 0.00197 ## FixOmega 1 1 2 / 62 = 0.03226 0.00096 ## Backrub 32 57 27 / 94 = 0.28723 0.00406 ## BigBackrub 23 31 11 / 80 = 0.13750 0.00459 ## OneRotamer 0 116 56 / 342 = 0.16374 0.01150 ## ClashingRotamer 1 0 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 3 4 0 / 34 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 69 = 0.00000 0.00000 ## CloseGap 0 3 0 / 46 = 0.00000 0.00000 ## HealGap 0 8 3 / 125 = 0.02400 0.00345 ## MoveGap 0 1 0 / 50 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 82 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 45 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 70 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 42 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 220 = 0.00000 0.00000 ## CrossOver 0 1 0 / 41 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 27 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 23 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)G273 # TweakPsiPhi removed gap before (T0547)E552 # TweakPsiPhi removed gap before (T0547)R293 # TweakPsiSubtree removed gap before (T0547)Y491 # TweakPsiSubtree removed gap before (T0547)L560 # TweakPsiPhi removed gap before (T0547)V277 # TweakPsiPhi removed gap before (T0547)I538 # TweakPsiPhi removed gap before (T0547)L375 # TweakPsiSubtree removed gap before (T0547)E115 # TweakPhi removed gap before (T0547)I59 # TweakPsiSubtree removed gap before (T0547)Q309 # TweakPsiSubtree removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)L557 # TweakPsiSubtree removed gap before (T0547)E361 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPsiSubtree removed gap before (T0547)R70 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)L275 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPhi removed gap before (T0547)A296 # TweakPhi removed gap before (T0547)K28 # TweakPhi removed gap before (T0547)N253 # TweakPsiSubtree removed gap before (T0547)A327 # TweakPhi removed gap before (T0547)Q56 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L497 # TweakPsiSubtree removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)N152 # TweakPsiSubtree removed gap before (T0547)F144 # TweakPhi removed gap before (T0547)G159 # Closed gap before (T0547)L593 # TweakPhi removed gap before (T0547)L303 # generation 34: best score out of 40: T0547.try1-opt2 220.11426 cost/residue, 1120 clashes 0.15105 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 43 26 / 94 = 0.27660 0.00634 ## JiggleSubtree 0 21 15 / 129 = 0.11628 0.00949 ## JiggleSegment 0 45 35 / 213 = 0.16432 0.01569 ## OptSubtree 0 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 0 / 50 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 41 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 44 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 64 = 0.01562 0.00032 ## TweakPhiSubtree 8 86 55 / 177 = 0.31073 0.01234 ## TweakPhiSegment 5 139 92 / 240 = 0.38333 0.01770 ## TweakPsiSubtree 0 36 20 / 97 = 0.20619 0.00955 ## TweakPsiSegment 2 85 62 / 173 = 0.35838 0.01628 ## TweakPsiPhiSubtree 18 71 39 / 114 = 0.34211 0.00567 ## TweakPsiPhiSegment 14 64 45 / 121 = 0.37190 0.00699 ## TweakHbondSubtree 3 41 23 / 91 = 0.25275 0.00421 ## TweakHbondSegment 5 62 35 / 142 = 0.24648 0.00923 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 5 / 33 = 0.15152 0.00191 ## FixOmega 1 1 2 / 62 = 0.03226 0.00096 ## Backrub 32 58 28 / 96 = 0.29167 0.00420 ## BigBackrub 25 33 12 / 82 = 0.14634 0.00470 ## OneRotamer 0 117 57 / 350 = 0.16286 0.01125 ## ClashingRotamer 1 0 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 3 4 0 / 34 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 70 = 0.00000 0.00000 ## CloseGap 0 3 0 / 47 = 0.00000 0.00000 ## HealGap 0 9 3 / 129 = 0.02326 0.00334 ## MoveGap 0 1 0 / 52 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 84 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 71 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 42 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 225 = 0.00000 0.00000 ## CrossOver 0 1 0 / 41 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 27 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 23 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)D103 # TweakPsiSubtree removed gap before (T0547)N459 # TweakPhi removed gap before (T0547)N88 # TweakPhi removed gap before (T0547)Q281 # TweakPsiPhi removed gap before (T0547)W454 # TweakPhi removed gap before (T0547)L560 # TweakPsiSubtree removed gap before (T0547)P335 # TweakPsiSubtree removed gap before (T0547)I16 # TweakPsiSubtree removed gap before (T0547)L418 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPsiSubtree removed gap before (T0547)T154 # TweakPsiSubtree removed gap before (T0547)D360 # TweakPsiPhi removed gap before (T0547)K246 # TweakPsiPhi removed gap before (T0547)L583 # TweakPsiSubtree removed gap before (T0547)L596 # Closed gap before (T0547)Y106 # TweakPsiPhi removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)N425 # TweakPsiPhi removed gap before (T0547)V98 # TweakPsiSubtree removed gap before (T0547)P356 # TweakPhi removed gap before (T0547)S368 # TweakPsiSubtree removed gap before (T0547)V191 # TweakPsiSubtree removed gap before (T0547)L391 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPhi removed gap before (T0547)N580 # TweakPsiPhi removed gap before (T0547)A536 # TweakPsiSubtree removed gap before (T0547)N152 # TweakPsiSubtree removed gap before (T0547)D40 # TweakPhi removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)L399 # TweakPsiPhi removed gap before (T0547)A345 # TweakPhi removed gap before (T0547)S492 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPsiPhi removed gap before (T0547)G42 # TweakPsiSubtree removed gap before (T0547)M571 # TweakPhi removed gap before (T0547)I23 # TweakPhi removed gap before (T0547)K44 # TweakPsiSubtree removed gap before (T0547)L49 # TweakPhi removed gap before (T0547)S280 # TweakPsiSubtree removed gap before (T0547)G107 # generation 35: best score out of 40: T0547.try1-opt2 219.89648 cost/residue, 1103 clashes 0.15181 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 47 28 / 100 = 0.28000 0.00638 ## JiggleSubtree 0 21 15 / 135 = 0.11111 0.00907 ## JiggleSegment 0 46 36 / 220 = 0.16364 0.01660 ## OptSubtree 0 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 0 / 50 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 41 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 46 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 65 = 0.01538 0.00031 ## TweakPhiSubtree 8 90 58 / 183 = 0.31694 0.01227 ## TweakPhiSegment 5 142 95 / 247 = 0.38462 0.01746 ## TweakPsiSubtree 0 39 24 / 104 = 0.23077 0.01011 ## TweakPsiSegment 2 90 67 / 186 = 0.36022 0.01542 ## TweakPsiPhiSubtree 19 73 41 / 117 = 0.35043 0.00559 ## TweakPsiPhiSegment 14 66 46 / 126 = 0.36508 0.00679 ## TweakHbondSubtree 3 41 23 / 94 = 0.24468 0.00407 ## TweakHbondSegment 5 64 38 / 147 = 0.25850 0.00957 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 10 5 / 35 = 0.14286 0.00180 ## FixOmega 2 1 2 / 63 = 0.03175 0.00095 ## Backrub 32 60 30 / 101 = 0.29703 0.00436 ## BigBackrub 25 35 13 / 85 = 0.15294 0.00514 ## OneRotamer 0 117 57 / 353 = 0.16147 0.01115 ## ClashingRotamer 1 0 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 3 4 0 / 35 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 71 = 0.00000 0.00000 ## CloseGap 0 3 0 / 48 = 0.00000 0.00000 ## HealGap 0 9 3 / 130 = 0.02308 0.00332 ## MoveGap 0 1 0 / 53 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 84 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 71 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 43 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 228 = 0.00000 0.00000 ## CrossOver 0 1 0 / 42 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 28 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 25 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)F73 # TweakPhi removed gap before (T0547)G74 # TweakPsiSubtree removed gap before (T0547)D586 # TweakPsiSubtree removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)G133 # TweakPhi removed gap before (T0547)D572 # TweakPhi removed gap before (T0547)I180 # TweakPhi removed gap before (T0547)N459 # TweakPhi removed gap before (T0547)A119 # TweakPhi removed gap before (T0547)G101 # TweakPsiPhi removed gap before (T0547)L523 # TweakPsiSubtree removed gap before (T0547)P335 # TweakPsiPhi removed gap before (T0547)Q437 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPhi removed gap before (T0547)K582 # TweakPhi removed gap before (T0547)D393 # TweakPsiSubtree removed gap before (T0547)G421 # TweakPsiSubtree removed gap before (T0547)A518 # TweakPsiPhi removed gap before (T0547)G199 # TweakPhi removed gap before (T0547)I350 # TweakPhi removed gap before (T0547)L85 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPhi removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)V184 # TweakPhi removed gap before (T0547)S475 # TweakPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)N284 # TweakPhi removed gap before (T0547)S188 # TweakPsiSubtree removed gap before (T0547)S208 # TweakPsiPhi removed gap before (T0547)N24 # TweakPsiSubtree removed gap before (T0547)L378 # TweakPhi removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)Y363 # TweakPsiPhi removed gap before (T0547)I167 # TweakPhi removed gap before (T0547)E361 # TweakPsiSubtree removed gap before (T0547)A268 # TweakPsiPhi removed gap before (T0547)A553 # TweakPsiSubtree removed gap before (T0547)Q309 # generation 36: best score out of 40: T0547.try1-opt2 219.81776 cost/residue, 1102 clashes 0.15176 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 49 30 / 106 = 0.28302 0.00660 ## JiggleSubtree 0 23 16 / 141 = 0.11348 0.00942 ## JiggleSegment 0 48 36 / 229 = 0.15721 0.01595 ## OptSubtree 0 0 0 / 47 = 0.00000 0.00000 ## OptSegment 0 1 0 / 51 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 42 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 46 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 65 = 0.01538 0.00031 ## TweakPhiSubtree 8 93 59 / 188 = 0.31383 0.01217 ## TweakPhiSegment 6 147 100 / 261 = 0.38314 0.01743 ## TweakPsiSubtree 0 43 27 / 114 = 0.23684 0.00967 ## TweakPsiSegment 3 93 70 / 193 = 0.36269 0.01596 ## TweakPsiPhiSubtree 19 75 42 / 119 = 0.35294 0.00560 ## TweakPsiPhiSegment 14 68 47 / 130 = 0.36154 0.00662 ## TweakHbondSubtree 3 41 23 / 94 = 0.24468 0.00407 ## TweakHbondSegment 5 67 40 / 151 = 0.26490 0.00962 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 10 5 / 35 = 0.14286 0.00180 ## FixOmega 2 1 2 / 64 = 0.03125 0.00093 ## Backrub 32 61 30 / 103 = 0.29126 0.00427 ## BigBackrub 25 35 13 / 86 = 0.15116 0.00508 ## OneRotamer 0 119 60 / 360 = 0.16667 0.01147 ## ClashingRotamer 1 0 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 3 4 0 / 35 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 72 = 0.00000 0.00000 ## CloseGap 0 3 0 / 48 = 0.00000 0.00000 ## HealGap 0 9 3 / 133 = 0.02256 0.00324 ## MoveGap 0 1 0 / 56 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 85 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 72 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 44 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 235 = 0.00000 0.00000 ## CrossOver 0 1 0 / 42 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 28 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 26 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)N88 # TweakPhi removed gap before (T0547)D33 # TweakPhi removed gap before (T0547)Q309 # TweakPhi removed gap before (T0547)W194 # TweakPsiPhi removed gap before (T0547)Q437 # TweakPhi removed gap before (T0547)Y509 # TweakPsiSubtree removed gap before (T0547)Q226 # TweakPsiPhi removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)L118 # TweakPsiPhi removed gap before (T0547)L606 # TweakPhi removed gap before (T0547)H187 # TweakPsiSubtree removed gap before (T0547)A119 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)D103 # TweakPsiSubtree removed gap before (T0547)P52 # TweakPsiSubtree removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)F144 # TweakPsiSubtree removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)L108 # TweakPsiSubtree removed gap before (T0547)S403 # TweakPhi removed gap before (T0547)V184 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)N96 # TweakPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)N508 # TweakPhi removed gap before (T0547)S368 # TweakPsiSubtree removed gap before (T0547)G92 # TweakPsiSubtree removed gap before (T0547)W194 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)E457 # TweakPsiPhi removed gap before (T0547)D3 # TweakPsiPhi removed gap before (T0547)I369 # TweakPsiSubtree removed gap before (T0547)K246 # TweakPsiSubtree removed gap before (T0547)L468 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L49 # TweakPsiSubtree removed gap before (T0547)M450 # TweakPsiPhi removed gap before (T0547)E488 # TweakPhi removed gap before (T0547)R323 # TweakPsiSubtree removed gap before (T0547)I432 # TweakPhi removed gap before (T0547)E125 # TweakPhi removed gap before (T0547)Q433 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPsiPhi removed gap before (T0547)Q89 # TweakPhi removed gap before (T0547)V611 # TweakPsiPhi removed gap before (T0547)L271 # generation 37: best score out of 40: T0547.try1-opt2 219.73045 cost/residue, 1093 clashes 0.15198 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 50 31 / 108 = 0.28704 0.00677 ## JiggleSubtree 0 26 18 / 150 = 0.12000 0.00988 ## JiggleSegment 0 48 36 / 236 = 0.15254 0.01547 ## OptSubtree 0 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 1 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 42 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 46 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 69 = 0.01449 0.00029 ## TweakPhiSubtree 8 94 61 / 195 = 0.31282 0.01178 ## TweakPhiSegment 7 154 106 / 270 = 0.39259 0.01817 ## TweakPsiSubtree 0 45 29 / 123 = 0.23577 0.01009 ## TweakPsiSegment 3 95 73 / 205 = 0.35610 0.01525 ## TweakPsiPhiSubtree 19 76 43 / 123 = 0.34959 0.00543 ## TweakPsiPhiSegment 14 71 47 / 135 = 0.34815 0.00637 ## TweakHbondSubtree 3 41 23 / 95 = 0.24211 0.00403 ## TweakHbondSegment 5 68 42 / 158 = 0.26582 0.00922 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 10 5 / 35 = 0.14286 0.00180 ## FixOmega 3 1 2 / 64 = 0.03125 0.00093 ## Backrub 33 62 30 / 104 = 0.28846 0.00423 ## BigBackrub 26 36 13 / 90 = 0.14444 0.00485 ## OneRotamer 0 122 60 / 366 = 0.16393 0.01129 ## ClashingRotamer 1 0 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 3 4 0 / 37 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 72 = 0.00000 0.00000 ## CloseGap 0 3 0 / 48 = 0.00000 0.00000 ## HealGap 0 9 3 / 135 = 0.02222 0.00320 ## MoveGap 0 1 0 / 56 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 86 = 0.01163 0.00005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 72 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 45 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 239 = 0.00000 0.00000 ## CrossOver 0 1 0 / 42 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 28 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 26 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)L139 # TweakPsiSubtree removed gap before (T0547)S112 # TweakPsiPhi removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)P472 # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiSubtree removed gap before (T0547)V522 # TweakPhi removed gap before (T0547)I550 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPhi removed gap before (T0547)L244 # TweakPhi removed gap before (T0547)N80 # TweakPsiPhi removed gap before (T0547)A121 # TweakPsiSubtree removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)I145 # TweakPhi removed gap before (T0547)E257 # TweakPsiPhi removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)G455 # TweakPhi removed gap before (T0547)E12 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPsiSubtree removed gap before (T0547)L399 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)H53 # TweakPsiSubtree removed gap before (T0547)F392 # TweakPsiPhi removed gap before (T0547)N601 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V331 # TweakPsiSubtree removed gap before (T0547)S208 # TweakPsiSubtree removed gap before (T0547)Y519 # TweakPsiSubtree removed gap before (T0547)E158 # TweakPsiSubtree removed gap before (T0547)L362 # TweakPhi removed gap before (T0547)F447 # TweakPsiSubtree removed gap before (T0547)S381 # TweakPhi removed gap before (T0547)T256 # TweakPsiSubtree removed gap before (T0547)L38 # TweakPsiPhi removed gap before (T0547)T154 # TweakPhi removed gap before (T0547)L408 # TweakPsiSubtree removed gap before (T0547)D494 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Y491 # TweakPhi removed gap before (T0547)L365 # TweakPhi removed gap before (T0547)L499 # TweakPsiSubtree removed gap before (T0547)D168 # TweakPsiSubtree removed gap before (T0547)E488 # generation 38: best score out of 40: T0547.try1-opt2 219.61331 cost/residue, 1093 clashes 0.15219 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 52 32 / 114 = 0.28070 0.00641 ## JiggleSubtree 0 29 20 / 157 = 0.12739 0.01047 ## JiggleSegment 0 49 37 / 241 = 0.15353 0.01543 ## OptSubtree 0 0 0 / 50 = 0.00000 0.00000 ## OptSegment 0 1 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 43 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 46 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 70 = 0.01429 0.00029 ## TweakPhiSubtree 8 96 61 / 200 = 0.30500 0.01148 ## TweakPhiSegment 7 157 108 / 276 = 0.39130 0.01850 ## TweakPsiSubtree 0 49 33 / 138 = 0.23913 0.00939 ## TweakPsiSegment 3 98 75 / 217 = 0.34562 0.01449 ## TweakPsiPhiSubtree 19 77 44 / 124 = 0.35484 0.00550 ## TweakPsiPhiSegment 15 74 49 / 140 = 0.35000 0.00619 ## TweakHbondSubtree 3 42 26 / 100 = 0.26000 0.00406 ## TweakHbondSegment 5 68 42 / 159 = 0.26415 0.00916 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 10 5 / 35 = 0.14286 0.00180 ## FixOmega 3 1 2 / 64 = 0.03125 0.00093 ## Backrub 35 63 31 / 106 = 0.29245 0.00440 ## BigBackrub 26 37 14 / 92 = 0.15217 0.00508 ## OneRotamer 0 126 63 / 378 = 0.16667 0.01119 ## ClashingRotamer 1 0 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 3 4 0 / 37 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 72 = 0.00000 0.00000 ## CloseGap 0 3 0 / 51 = 0.00000 0.00000 ## HealGap 0 9 3 / 136 = 0.02206 0.00317 ## MoveGap 0 1 0 / 56 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 87 = 0.01149 0.00005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 74 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 46 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 242 = 0.00000 0.00000 ## CrossOver 0 1 0 / 42 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 29 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 26 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)L182 # TweakPsiPhi removed gap before (T0547)F513 # TweakPsiPhi removed gap before (T0547)L497 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)T473 # TweakPhi removed gap before (T0547)G517 # TweakPhi removed gap before (T0547)K352 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)F301 # TweakPhi removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)S475 # TweakPhi removed gap before (T0547)F444 # TweakPsiSubtree removed gap before (T0547)A536 # TweakPhi removed gap before (T0547)A119 # TweakPhi removed gap before (T0547)K102 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)L515 # TweakPsiPhi removed gap before (T0547)F599 # TweakPsiSubtree removed gap before (T0547)Q458 # TweakPsiPhi removed gap before (T0547)I6 # TweakPhi removed gap before (T0547)D380 # TweakPhi removed gap before (T0547)L155 # TweakPhi removed gap before (T0547)G235 # TweakPsiPhi removed gap before (T0547)E225 # TweakPhi removed gap before (T0547)L399 # TweakPhi removed gap before (T0547)F444 # TweakPhi removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)K587 # TweakPsiPhi removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)P29 # TweakPsiPhi removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)A121 # generation 39: best score out of 40: T0547.try1-opt2 219.30470 cost/residue, 1077 clashes 0.15240 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 52 32 / 117 = 0.27350 0.00625 ## JiggleSubtree 0 29 21 / 164 = 0.12805 0.01052 ## JiggleSegment 0 51 39 / 251 = 0.15538 0.01522 ## OptSubtree 0 0 0 / 51 = 0.00000 0.00000 ## OptSegment 0 1 0 / 55 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 43 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 46 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 71 = 0.01408 0.00029 ## TweakPhiSubtree 8 96 61 / 203 = 0.30049 0.01132 ## TweakPhiSegment 7 163 112 / 288 = 0.38889 0.01807 ## TweakPsiSubtree 0 50 35 / 143 = 0.24476 0.00913 ## TweakPsiSegment 3 101 79 / 223 = 0.35426 0.01610 ## TweakPsiPhiSubtree 20 77 44 / 125 = 0.35200 0.00545 ## TweakPsiPhiSegment 15 78 52 / 146 = 0.35616 0.00615 ## TweakHbondSubtree 3 43 26 / 102 = 0.25490 0.00398 ## TweakHbondSegment 5 70 43 / 161 = 0.26708 0.00924 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 10 5 / 35 = 0.14286 0.00180 ## FixOmega 4 1 2 / 64 = 0.03125 0.00093 ## Backrub 37 67 33 / 110 = 0.30000 0.00457 ## BigBackrub 26 37 14 / 94 = 0.14894 0.00497 ## OneRotamer 0 129 66 / 389 = 0.16967 0.01125 ## ClashingRotamer 1 0 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 3 4 0 / 37 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 74 = 0.00000 0.00000 ## CloseGap 0 3 0 / 51 = 0.00000 0.00000 ## HealGap 0 9 3 / 139 = 0.02158 0.00310 ## MoveGap 0 1 0 / 56 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 90 = 0.01111 0.00005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 79 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 47 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 247 = 0.00000 0.00000 ## CrossOver 0 1 0 / 44 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 29 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 26 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)W194 # TweakPhi removed gap before (T0547)D501 # TweakPsiPhi removed gap before (T0547)I15 # TweakPsiSubtree removed gap before (T0547)L529 # TweakPsiSubtree removed gap before (T0547)D360 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)F51 # TweakPsiSubtree removed gap before (T0547)E470 # TweakPsiSubtree removed gap before (T0547)K423 # TweakPsiPhi removed gap before (T0547)L85 # TweakPhi removed gap before (T0547)L441 # TweakPsiSubtree removed gap before (T0547)T413 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E343 # TweakPhi removed gap before (T0547)Y545 # TweakPsiSubtree removed gap before (T0547)I167 # TweakPhi removed gap before (T0547)V336 # TweakPsiPhi removed gap before (T0547)A327 # TweakPsiSubtree removed gap before (T0547)P335 # TweakPsiSubtree removed gap before (T0547)W454 # TweakPhi removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)E138 # TweakPsiSubtree removed gap before (T0547)E435 # TweakPsiPhi removed gap before (T0547)Y396 # TweakPhi removed gap before (T0547)K68 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPhi removed gap before (T0547)V131 # TweakPhi removed gap before (T0547)K493 # TweakPhi removed gap before (T0547)G92 # TweakPhi removed gap before (T0547)K357 # TweakPhi removed gap before (T0547)S112 # TweakPsiSubtree removed gap before (T0547)D3 # TweakPsiSubtree removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)D602 # TweakPhi removed gap before (T0547)V21 # TweakPsiSubtree removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)N80 # TweakPsiSubtree removed gap before (T0547)D316 # TweakPsiSubtree removed gap before (T0547)S236 # TweakPsiSubtree removed gap before (T0547)H379 # TweakPhi removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)N404 # TweakPsiSubtree removed gap before (T0547)P243 # TweakPsiSubtree removed gap before (T0547)I32 # BackrubGuts cancelled---proline or break # generation 40: best score out of 40: T0547.try1-opt2 219.25146 cost/residue, 1073 clashes 0.15188 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 53 34 / 120 = 0.28333 0.00678 ## JiggleSubtree 0 31 22 / 170 = 0.12941 0.01021 ## JiggleSegment 0 55 40 / 259 = 0.15444 0.01612 ## OptSubtree 0 0 0 / 52 = 0.00000 0.00000 ## OptSegment 0 1 0 / 58 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 46 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 72 = 0.01389 0.00028 ## TweakPhiSubtree 8 99 63 / 209 = 0.30144 0.01113 ## TweakPhiSegment 7 168 116 / 299 = 0.38796 0.01809 ## TweakPsiSubtree 0 53 38 / 153 = 0.24837 0.00923 ## TweakPsiSegment 3 107 83 / 234 = 0.35470 0.01698 ## TweakPsiPhiSubtree 20 78 45 / 128 = 0.35156 0.00539 ## TweakPsiPhiSegment 15 78 53 / 148 = 0.35811 0.00644 ## TweakHbondSubtree 3 43 26 / 103 = 0.25243 0.00394 ## TweakHbondSegment 5 70 43 / 162 = 0.26543 0.00918 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 12 6 / 40 = 0.15000 0.00160 ## FixOmega 4 1 2 / 64 = 0.03125 0.00093 ## Backrub 38 68 33 / 111 = 0.29730 0.00453 ## BigBackrub 28 37 14 / 98 = 0.14286 0.00477 ## OneRotamer 0 129 66 / 394 = 0.16751 0.01110 ## ClashingRotamer 1 0 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 37 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 75 = 0.00000 0.00000 ## CloseGap 0 3 0 / 52 = 0.00000 0.00000 ## HealGap 0 10 4 / 143 = 0.02797 0.00305 ## MoveGap 0 1 0 / 57 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 91 = 0.01099 0.00005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 82 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 48 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 249 = 0.00000 0.00000 ## CrossOver 0 1 0 / 46 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 29 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 27 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)S372 # TweakPhi removed gap before (T0547)N61 # TweakPhi removed gap before (T0547)L49 # TweakPhi removed gap before (T0547)A330 # TweakPsiSubtree removed gap before (T0547)A214 # TweakPsiSubtree removed gap before (T0547)G143 # TweakPhi removed gap before (T0547)S477 # TweakPhi removed gap before (T0547)E250 # TweakPsiPhi removed gap before (T0547)A146 # TweakPhi removed gap before (T0547)H187 # TweakPsiPhi removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)S475 # TweakPsiSubtree removed gap before (T0547)Y63 # TweakPhi removed gap before (T0547)L211 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPhi removed gap before (T0547)S490 # TweakPsiSubtree removed gap before (T0547)L523 # TweakPsiSubtree removed gap before (T0547)E561 # TweakPhi removed gap before (T0547)G107 # TweakPsiPhi removed gap before (T0547)S579 # TweakPsiPhi removed gap before (T0547)D434 # TweakPsiSubtree removed gap before (T0547)G150 # TweakPhi removed gap before (T0547)D168 # TweakPhi removed gap before (T0547)L389 # TweakPhi removed gap before (T0547)V98 # Closed gap before (T0547)Y106 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)R467 # TweakPhi removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)V300 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPsiPhi removed gap before (T0547)E470 # TweakPsiSubtree removed gap before (T0547)S490 # TweakPhi removed gap before (T0547)A327 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPsiSubtree removed gap before (T0547)N141 # TweakPhi removed gap before (T0547)L271 # TweakPhi removed gap before (T0547)E548 # TweakPsiSubtree removed gap before (T0547)K76 # generation 41: best score out of 40: T0547.try1-opt2 219.14740 cost/residue, 1071 clashes 0.15322 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 54 35 / 121 = 0.28926 0.00708 ## JiggleSubtree 0 33 22 / 175 = 0.12571 0.00992 ## JiggleSegment 0 56 42 / 268 = 0.15672 0.01618 ## OptSubtree 0 0 0 / 52 = 0.00000 0.00000 ## OptSegment 0 1 0 / 58 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 45 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 47 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 73 = 0.01370 0.00028 ## TweakPhiSubtree 8 101 65 / 218 = 0.29817 0.01086 ## TweakPhiSegment 7 174 120 / 308 = 0.38961 0.01778 ## TweakPsiSubtree 0 54 39 / 159 = 0.24528 0.00902 ## TweakPsiSegment 3 114 88 / 247 = 0.35628 0.01745 ## TweakPsiPhiSubtree 21 79 46 / 130 = 0.35385 0.00553 ## TweakPsiPhiSegment 15 81 55 / 151 = 0.36424 0.00681 ## TweakHbondSubtree 3 45 27 / 106 = 0.25472 0.00417 ## TweakHbondSegment 5 71 43 / 167 = 0.25749 0.00890 ## TweakMultimer 30 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 12 6 / 40 = 0.15000 0.00160 ## FixOmega 4 1 2 / 64 = 0.03125 0.00093 ## Backrub 39 70 33 / 113 = 0.29204 0.00445 ## BigBackrub 28 38 15 / 100 = 0.15000 0.00546 ## OneRotamer 0 131 68 / 406 = 0.16749 0.01172 ## ClashingRotamer 1 0 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 38 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 76 = 0.00000 0.00000 ## CloseGap 0 3 0 / 53 = 0.00000 0.00000 ## HealGap 0 10 4 / 143 = 0.02797 0.00305 ## MoveGap 0 1 0 / 57 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 92 = 0.01087 0.00005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 84 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 50 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 255 = 0.00000 0.00000 ## CrossOver 0 1 0 / 46 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 29 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 27 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)G487 # TweakPsiPhi removed gap before (T0547)I34 # TweakPhi removed gap before (T0547)T482 # TweakPhi removed gap before (T0547)K283 # TweakPsiPhi removed gap before (T0547)N443 # TweakPhi removed gap before (T0547)K587 # TweakPhi removed gap before (T0547)T531 # TweakPsiPhi removed gap before (T0547)L108 # TweakPhi removed gap before (T0547)E406 # Closed gap before (T0547)L593 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)V325 # TweakPsiSubtree removed gap before (T0547)K28 # TweakPsiPhi removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)M571 # TweakPhi removed gap before (T0547)Q400 # TweakPhi removed gap before (T0547)F340 # TweakPhi removed gap before (T0547)T559 # TweakPhi removed gap before (T0547)K352 # TweakPsiSubtree removed gap before (T0547)E343 # TweakPsiPhi removed gap before (T0547)Q520 # TweakPsiSubtree removed gap before (T0547)E285 # TweakPhi removed gap before (T0547)E60 # TweakPsiSubtree removed gap before (T0547)T209 # TweakPsiSubtree removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)N179 # TweakPsiPhi removed gap before (T0547)D33 # TweakPsiPhi removed gap before (T0547)I15 # TweakPsiSubtree removed gap before (T0547)V98 # TweakPsiSubtree removed gap before (T0547)E346 # TweakPsiSubtree removed gap before (T0547)K506 # TweakPhi removed gap before (T0547)M463 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G133 # TweakPhi removed gap before (T0547)Y396 # TweakPsiSubtree removed gap before (T0547)T256 # TweakPhi removed gap before (T0547)L47 # TweakPsiSubtree removed gap before (T0547)I551 # TweakPhi removed gap before (T0547)Q89 # generation 42: best score out of 40: T0547.try1-opt2 219.08693 cost/residue, 1065 clashes 0.15257 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 56 36 / 127 = 0.28346 0.00688 ## JiggleSubtree 0 34 23 / 180 = 0.12778 0.01028 ## JiggleSegment 1 58 44 / 275 = 0.16000 0.01641 ## OptSubtree 0 0 0 / 53 = 0.00000 0.00000 ## OptSegment 0 1 0 / 58 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 46 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 48 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 75 = 0.01333 0.00027 ## TweakPhiSubtree 8 102 66 / 220 = 0.30000 0.01081 ## TweakPhiSegment 7 181 125 / 323 = 0.38700 0.01719 ## TweakPsiSubtree 0 54 39 / 162 = 0.24074 0.00886 ## TweakPsiSegment 3 121 95 / 260 = 0.36538 0.01670 ## TweakPsiPhiSubtree 22 80 47 / 134 = 0.35075 0.00586 ## TweakPsiPhiSegment 17 83 55 / 154 = 0.35714 0.00668 ## TweakHbondSubtree 3 46 27 / 108 = 0.25000 0.00409 ## TweakHbondSegment 5 72 43 / 170 = 0.25294 0.00875 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 12 7 / 41 = 0.17073 0.00169 ## FixOmega 4 1 2 / 64 = 0.03125 0.00093 ## Backrub 40 70 33 / 116 = 0.28448 0.00433 ## BigBackrub 29 38 16 / 103 = 0.15534 0.00541 ## OneRotamer 0 135 71 / 419 = 0.16945 0.01209 ## ClashingRotamer 1 0 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 39 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 78 = 0.00000 0.00000 ## CloseGap 0 3 0 / 55 = 0.00000 0.00000 ## HealGap 0 10 4 / 144 = 0.02778 0.00302 ## MoveGap 0 1 0 / 59 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 92 = 0.01087 0.00005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 85 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 50 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 257 = 0.00000 0.00000 ## CrossOver 0 1 0 / 46 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 30 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 27 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)E12 # TweakPsiSubtree removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)K36 # TweakPsiSubtree removed gap before (T0547)I359 # TweakPsiSubtree removed gap before (T0547)M2 # TweakPsiSubtree removed gap before (T0547)L600 # TweakPsiSubtree removed gap before (T0547)M229 # TweakPsiPhi removed gap before (T0547)E26 # TweakPhi removed gap before (T0547)Y83 # TweakPsiPhi removed gap before (T0547)V82 # TweakPhi removed gap before (T0547)D486 # TweakPsiSubtree removed gap before (T0547)I550 # TweakPhi removed gap before (T0547)G133 # TweakPsiSubtree removed gap before (T0547)Y295 # TweakPhi removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)G77 # TweakPsiPhi removed gap before (T0547)G524 # TweakPhi removed gap before (T0547)F318 # TweakPsiPhi removed gap before (T0547)D401 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K135 # TweakPsiPhi removed gap before (T0547)L139 # TweakPsiSubtree removed gap before (T0547)H410 # TweakPsiSubtree removed gap before (T0547)L303 # TweakPhi removed gap before (T0547)Y25 # TweakPsiSubtree removed gap before (T0547)I59 # TweakPsiSubtree removed gap before (T0547)E343 # TweakPhi removed gap before (T0547)Q309 # TweakPsiSubtree removed gap before (T0547)R173 # TweakPhi removed gap before (T0547)G395 # TweakPhi removed gap before (T0547)H568 # TweakPhi removed gap before (T0547)N123 # TweakPsiSubtree removed gap before (T0547)H53 # TweakPhi removed gap before (T0547)D572 # generation 43: best score out of 40: T0547.try1-opt2 219.04787 cost/residue, 1063 clashes 0.15141 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 56 36 / 129 = 0.27907 0.00677 ## JiggleSubtree 0 34 23 / 186 = 0.12366 0.00995 ## JiggleSegment 1 60 46 / 285 = 0.16140 0.01651 ## OptSubtree 0 0 0 / 54 = 0.00000 0.00000 ## OptSegment 0 1 0 / 58 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 47 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 49 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 76 = 0.01316 0.00027 ## TweakPhiSubtree 9 104 67 / 224 = 0.29911 0.01094 ## TweakPhiSegment 7 184 127 / 332 = 0.38253 0.01724 ## TweakPsiSubtree 0 55 39 / 166 = 0.23494 0.00864 ## TweakPsiSegment 3 129 98 / 272 = 0.36029 0.01628 ## TweakPsiPhiSubtree 22 81 47 / 136 = 0.34559 0.00577 ## TweakPsiPhiSegment 18 85 57 / 158 = 0.36076 0.00695 ## TweakHbondSubtree 3 46 27 / 109 = 0.24771 0.00405 ## TweakHbondSegment 5 72 43 / 177 = 0.24294 0.00840 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 12 7 / 42 = 0.16667 0.00165 ## FixOmega 4 1 2 / 65 = 0.03077 0.00092 ## Backrub 40 72 35 / 121 = 0.28926 0.00427 ## BigBackrub 30 38 16 / 104 = 0.15385 0.00536 ## OneRotamer 0 139 73 / 427 = 0.17096 0.01206 ## ClashingRotamer 1 0 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 41 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 80 = 0.01250 0.00130 ## CloseGap 0 3 0 / 55 = 0.00000 0.00000 ## HealGap 0 10 4 / 146 = 0.02740 0.00298 ## MoveGap 0 1 0 / 59 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 94 = 0.01064 0.00005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 87 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 51 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 263 = 0.00000 0.00000 ## CrossOver 0 1 0 / 46 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 30 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 29 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)N141 # TweakPhi removed gap before (T0547)A518 # TweakPsiSubtree removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)G544 # TweakPsiPhi removed gap before (T0547)R39 # TweakPsiPhi removed gap before (T0547)N123 # TweakPsiPhi removed gap before (T0547)I556 # TweakPhi removed gap before (T0547)I23 # TweakPhi removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)E338 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L557 # TweakPhi removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)V516 # TweakPsiPhi removed gap before (T0547)H187 # TweakPsiSubtree removed gap before (T0547)T390 # TweakPsiSubtree removed gap before (T0547)I16 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)P496 # TweakPhi removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)E457 # TweakPhi removed gap before (T0547)L600 # TweakPhi removed gap before (T0547)L332 # TweakPsiPhi removed gap before (T0547)K203 # TweakPhi removed gap before (T0547)D562 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A327 # TweakPsiSubtree removed gap before (T0547)L275 # TweakPsiPhi removed gap before (T0547)G92 # TweakPsiSubtree removed gap before (T0547)A330 # TweakPsiPhi removed gap before (T0547)S555 # TweakPhi removed gap before (T0547)I193 # generation 44: best score out of 40: T0547.try1-opt2 218.97076 cost/residue, 1064 clashes 0.15334 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 58 38 / 132 = 0.28788 0.00676 ## JiggleSubtree 0 35 24 / 194 = 0.12371 0.00991 ## JiggleSegment 1 63 48 / 295 = 0.16271 0.01641 ## OptSubtree 0 1 1 / 57 = 0.01754 0.00355 ## OptSegment 0 1 0 / 58 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 47 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 49 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 79 = 0.01266 0.00026 ## TweakPhiSubtree 9 110 69 / 231 = 0.29870 0.01075 ## TweakPhiSegment 7 186 129 / 335 = 0.38507 0.01717 ## TweakPsiSubtree 0 57 39 / 172 = 0.22674 0.00834 ## TweakPsiSegment 3 129 98 / 278 = 0.35252 0.01593 ## TweakPsiPhiSubtree 22 83 48 / 139 = 0.34532 0.00586 ## TweakPsiPhiSegment 18 86 58 / 162 = 0.35802 0.00681 ## TweakHbondSubtree 3 46 27 / 111 = 0.24324 0.00398 ## TweakHbondSegment 5 72 43 / 180 = 0.23889 0.00826 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 13 7 / 43 = 0.16279 0.00161 ## FixOmega 4 1 2 / 65 = 0.03077 0.00092 ## Backrub 41 72 35 / 121 = 0.28926 0.00427 ## BigBackrub 32 41 18 / 112 = 0.16071 0.00584 ## OneRotamer 0 140 74 / 437 = 0.16934 0.01178 ## ClashingRotamer 1 0 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 41 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 83 = 0.01205 0.00125 ## CloseGap 0 3 0 / 55 = 0.00000 0.00000 ## HealGap 0 10 4 / 149 = 0.02685 0.00292 ## MoveGap 0 1 0 / 59 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 95 = 0.01053 0.00005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 88 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 53 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 270 = 0.00000 0.00000 ## CrossOver 0 1 0 / 46 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 31 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 30 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)R183 # TweakPhi removed gap before (T0547)N459 # TweakPsiSubtree removed gap before (T0547)N161 # TweakPsiSubtree removed gap before (T0547)R173 # TweakPsiSubtree removed gap before (T0547)H187 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)E60 # TweakPhi removed gap before (T0547)R70 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N13 # TweakPhi removed gap before (T0547)Y90 # TweakPsiPhi removed gap before (T0547)L606 # TweakPsiSubtree removed gap before (T0547)A189 # TweakPhi removed gap before (T0547)Q89 # TweakPsiPhi removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)R474 # TweakPhi removed gap before (T0547)I432 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)D558 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Y565 # TweakPhi removed gap before (T0547)G205 # TweakPsiSubtree removed gap before (T0547)D393 # TweakPsiPhi removed gap before (T0547)N459 # TweakPhi removed gap before (T0547)T390 # TweakPsiSubtree removed gap before (T0547)N161 # TweakPsiSubtree removed gap before (T0547)P496 # TweakPsiPhi removed gap before (T0547)L275 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E164 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N249 # TweakPhi removed gap before (T0547)N18 # TweakPhi removed gap before (T0547)D428 # TweakPhi removed gap before (T0547)Q554 # TweakPsiSubtree removed gap before (T0547)E278 # TweakPhi removed gap before (T0547)A326 # TweakPhi removed gap before (T0547)A147 # TweakPhi removed gap before (T0547)I212 # TweakPsiSubtree removed gap before (T0547)E488 # TweakPhi removed gap before (T0547)A553 # TweakPhi removed gap before (T0547)V442 # generation 45: best score out of 40: T0547.try1-opt2 218.94508 cost/residue, 1073 clashes 0.15087 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 61 40 / 137 = 0.29197 0.00674 ## JiggleSubtree 0 36 25 / 197 = 0.12690 0.01018 ## JiggleSegment 1 63 48 / 300 = 0.16000 0.01614 ## OptSubtree 0 1 1 / 67 = 0.01493 0.00302 ## OptSegment 0 1 0 / 59 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 47 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 51 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 79 = 0.01266 0.00026 ## TweakPhiSubtree 9 112 71 / 238 = 0.29832 0.01047 ## TweakPhiSegment 7 191 131 / 345 = 0.37971 0.01703 ## TweakPsiSubtree 0 59 40 / 177 = 0.22599 0.00812 ## TweakPsiSegment 3 133 102 / 287 = 0.35540 0.01591 ## TweakPsiPhiSubtree 22 85 48 / 143 = 0.33566 0.00569 ## TweakPsiPhiSegment 18 88 59 / 166 = 0.35542 0.00666 ## TweakHbondSubtree 3 46 27 / 115 = 0.23478 0.00384 ## TweakHbondSegment 5 74 45 / 182 = 0.24725 0.00858 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 13 7 / 43 = 0.16279 0.00161 ## FixOmega 4 1 2 / 65 = 0.03077 0.00092 ## Backrub 43 72 35 / 123 = 0.28455 0.00420 ## BigBackrub 35 44 20 / 116 = 0.17241 0.00589 ## OneRotamer 0 141 75 / 442 = 0.16968 0.01179 ## ClashingRotamer 1 0 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 41 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 86 = 0.01163 0.00121 ## CloseGap 0 3 0 / 56 = 0.00000 0.00000 ## HealGap 0 10 4 / 150 = 0.02667 0.00290 ## MoveGap 0 1 0 / 59 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 95 = 0.01053 0.00005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 52 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 90 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 53 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 274 = 0.00000 0.00000 ## CrossOver 0 1 0 / 48 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 32 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 30 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)T409 # TweakPhi removed gap before (T0547)G252 # TweakPsiPhi removed gap before (T0547)A214 # TweakPhi removed gap before (T0547)L116 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPhi removed gap before (T0547)L515 # TweakPsiSubtree removed gap before (T0547)L182 # TweakPsiSubtree removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)A330 # TweakPsiSubtree removed gap before (T0547)Y255 # TweakPhi removed gap before (T0547)S490 # TweakPsiPhi removed gap before (T0547)V277 # TweakPsiPhi removed gap before (T0547)K28 # TweakPhi removed gap before (T0547)K219 # TweakPsiSubtree removed gap before (T0547)E60 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K57 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)E37 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E561 # TweakPsiSubtree removed gap before (T0547)L499 # TweakPsiSubtree removed gap before (T0547)V21 # TweakPhi removed gap before (T0547)K135 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPhi removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)N61 # TweakPsiPhi removed gap before (T0547)V522 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # generation 46: best score out of 40: T0547.try1-opt2 218.87526 cost/residue, 1060 clashes 0.15303 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 63 40 / 142 = 0.28169 0.00651 ## JiggleSubtree 0 36 25 / 203 = 0.12315 0.00988 ## JiggleSegment 1 64 49 / 303 = 0.16172 0.01609 ## OptSubtree 0 1 1 / 72 = 0.01389 0.00281 ## OptSegment 0 1 0 / 59 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 47 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 51 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 79 = 0.01266 0.00026 ## TweakPhiSubtree 9 114 71 / 240 = 0.29583 0.01039 ## TweakPhiSegment 7 196 134 / 354 = 0.37853 0.01690 ## TweakPsiSubtree 0 60 40 / 183 = 0.21858 0.00785 ## TweakPsiSegment 3 137 105 / 296 = 0.35473 0.01577 ## TweakPsiPhiSubtree 24 86 50 / 146 = 0.34247 0.00576 ## TweakPsiPhiSegment 18 89 60 / 168 = 0.35714 0.00667 ## TweakHbondSubtree 3 47 28 / 117 = 0.23932 0.00440 ## TweakHbondSegment 5 77 47 / 188 = 0.25000 0.00839 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 13 7 / 44 = 0.15909 0.00157 ## FixOmega 4 1 2 / 65 = 0.03077 0.00092 ## Backrub 46 73 35 / 124 = 0.28226 0.00417 ## BigBackrub 37 48 23 / 122 = 0.18852 0.00622 ## OneRotamer 0 143 75 / 454 = 0.16520 0.01148 ## ClashingRotamer 1 0 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 41 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 93 = 0.01075 0.00112 ## CloseGap 0 3 0 / 56 = 0.00000 0.00000 ## HealGap 0 10 4 / 153 = 0.02614 0.00285 ## MoveGap 0 1 0 / 60 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 95 = 0.01053 0.00005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 52 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 94 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 54 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 277 = 0.00000 0.00000 ## CrossOver 0 1 0 / 48 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 32 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 33 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)E37 # TweakPhi removed gap before (T0547)S555 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)H591 # TweakPhi removed gap before (T0547)N221 # TweakPhi removed gap before (T0547)I140 # TweakPsiPhi removed gap before (T0547)L560 # TweakPsiPhi removed gap before (T0547)I306 # TweakPhi removed gap before (T0547)I157 # TweakPsiSubtree removed gap before (T0547)I145 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)M261 # TweakPsiSubtree removed gap before (T0547)K171 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPhi removed gap before (T0547)L430 # TweakPhi removed gap before (T0547)K587 # TweakPsiPhi removed gap before (T0547)I23 # TweakPhi removed gap before (T0547)Q433 # TweakPsiPhi removed gap before (T0547)L217 # TweakPsiSubtree removed gap before (T0547)N585 # TweakPhi removed gap before (T0547)V277 # TweakPhi removed gap before (T0547)L339 # TweakPhi removed gap before (T0547)I570 # TweakPsiPhi removed gap before (T0547)A247 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)V331 # TweakPsiSubtree removed gap before (T0547)Y295 # TweakPsiSubtree removed gap before (T0547)Y104 # TweakPhi removed gap before (T0547)N105 # TweakPhi removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)N575 # TweakPhi removed gap before (T0547)S608 # TweakPhi removed gap before (T0547)A296 # TweakPsiSubtree removed gap before (T0547)A195 # TweakPhi removed gap before (T0547)Y75 # generation 47: best score out of 40: T0547.try1-opt2 218.77347 cost/residue, 1056 clashes 0.15310 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 64 40 / 146 = 0.27397 0.00633 ## JiggleSubtree 0 36 25 / 205 = 0.12195 0.00979 ## JiggleSegment 2 64 49 / 313 = 0.15655 0.01557 ## OptSubtree 0 1 1 / 79 = 0.01266 0.00256 ## OptSegment 0 1 0 / 61 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 48 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 51 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 79 = 0.01266 0.00026 ## TweakPhiSubtree 9 117 74 / 246 = 0.30081 0.01042 ## TweakPhiSegment 7 202 139 / 365 = 0.38082 0.01750 ## TweakPsiSubtree 0 63 41 / 190 = 0.21579 0.00764 ## TweakPsiSegment 3 141 107 / 303 = 0.35314 0.01558 ## TweakPsiPhiSubtree 26 88 50 / 148 = 0.33784 0.00569 ## TweakPsiPhiSegment 19 89 60 / 171 = 0.35088 0.00655 ## TweakHbondSubtree 3 47 28 / 118 = 0.23729 0.00436 ## TweakHbondSegment 5 79 48 / 190 = 0.25263 0.00899 ## TweakMultimer 35 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 13 8 / 45 = 0.17778 0.00157 ## FixOmega 4 1 2 / 66 = 0.03030 0.00090 ## Backrub 46 75 35 / 130 = 0.26923 0.00397 ## BigBackrub 39 49 23 / 129 = 0.17829 0.00589 ## OneRotamer 0 145 77 / 464 = 0.16595 0.01146 ## ClashingRotamer 1 0 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 41 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 97 = 0.01031 0.00107 ## CloseGap 0 4 0 / 57 = 0.00000 0.00000 ## HealGap 0 10 4 / 154 = 0.02597 0.00283 ## MoveGap 0 1 0 / 60 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 96 = 0.01042 0.00005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 52 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 95 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 55 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 277 = 0.00000 0.00000 ## CrossOver 0 1 0 / 48 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 33 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 33 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)F514 # TweakPsiSubtree removed gap before (T0547)T482 # TweakPsiPhi removed gap before (T0547)S387 # TweakPsiPhi removed gap before (T0547)G77 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)Q342 # TweakPsiSubtree removed gap before (T0547)A189 # TweakPsiSubtree removed gap before (T0547)K260 # TweakPsiPhi removed gap before (T0547)K493 # TweakPhi removed gap before (T0547)E595 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)E26 # TweakPsiSubtree removed gap before (T0547)S341 # TweakPhi removed gap before (T0547)L182 # TweakPsiSubtree removed gap before (T0547)L389 # TweakPhi removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)Y509 # TweakPsiPhi removed gap before (T0547)L515 # TweakPhi removed gap before (T0547)I319 # TweakPhi removed gap before (T0547)G150 # TweakPhi removed gap before (T0547)E115 # TweakPsiPhi removed gap before (T0547)V184 # TweakPsiPhi removed gap before (T0547)I609 # TweakPhi removed gap before (T0547)D168 # TweakPsiPhi removed gap before (T0547)N24 # TweakPhi removed gap before (T0547)M571 # TweakPsiSubtree removed gap before (T0547)I359 # TweakPsiSubtree removed gap before (T0547)K587 # TweakPsiPhi removed gap before (T0547)A326 # TweakPsiSubtree removed gap before (T0547)V336 # TweakPhi removed gap before (T0547)N328 # TweakPsiPhi removed gap before (T0547)F513 # generation 48: best score out of 40: T0547.try1-opt2 218.65701 cost/residue, 1061 clashes 0.15042 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 65 40 / 148 = 0.27027 0.00624 ## JiggleSubtree 0 37 26 / 210 = 0.12381 0.00977 ## JiggleSegment 2 66 50 / 325 = 0.15385 0.01551 ## OptSubtree 0 2 2 / 84 = 0.02381 0.00415 ## OptSegment 0 1 0 / 63 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 49 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 51 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 79 = 0.01266 0.00026 ## TweakPhiSubtree 9 118 76 / 248 = 0.30645 0.01049 ## TweakPhiSegment 7 208 141 / 375 = 0.37600 0.01709 ## TweakPsiSubtree 0 64 42 / 194 = 0.21649 0.00751 ## TweakPsiSegment 3 144 109 / 310 = 0.35161 0.01529 ## TweakPsiPhiSubtree 27 90 51 / 154 = 0.33117 0.00563 ## TweakPsiPhiSegment 21 91 61 / 177 = 0.34463 0.00637 ## TweakHbondSubtree 3 51 30 / 123 = 0.24390 0.00499 ## TweakHbondSegment 5 79 48 / 193 = 0.24870 0.00885 ## TweakMultimer 37 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 13 8 / 45 = 0.17778 0.00157 ## FixOmega 4 1 2 / 68 = 0.02941 0.00088 ## Backrub 47 77 35 / 132 = 0.26515 0.00391 ## BigBackrub 40 51 24 / 133 = 0.18045 0.00746 ## OneRotamer 0 146 77 / 470 = 0.16383 0.01132 ## ClashingRotamer 1 0 0 / 50 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 41 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 98 = 0.01020 0.00106 ## CloseGap 0 4 0 / 57 = 0.00000 0.00000 ## HealGap 0 10 4 / 154 = 0.02597 0.00283 ## MoveGap 0 1 0 / 60 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 98 = 0.01020 0.00005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 55 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 95 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 57 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 281 = 0.00000 0.00000 ## CrossOver 0 1 0 / 49 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 33 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 34 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)S555 # TweakPhi removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)R39 # TweakPhi removed gap before (T0547)R288 # TweakPhi removed gap before (T0547)D562 # TweakPsiPhi removed gap before (T0547)I388 # TweakPhi removed gap before (T0547)N355 # TweakPsiPhi removed gap before (T0547)H233 # TweakPhi removed gap before (T0547)S579 # TweakPhi removed gap before (T0547)D501 # TweakPsiSubtree removed gap before (T0547)G594 # TweakPsiSubtree removed gap before (T0547)D486 # Healed gap before (T0547)Y43 residual break only 0.044 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K219 # TweakPsiPhi removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)D602 # TweakPhi removed gap before (T0547)N124 # TweakPsiSubtree removed gap before (T0547)G272 # TweakPhi removed gap before (T0547)L116 # TweakPsiPhi removed gap before (T0547)N253 # TweakPhi removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)N425 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPhi removed gap before (T0547)D136 # TweakPsiPhi removed gap before (T0547)T531 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)E521 # TweakPsiSubtree removed gap before (T0547)G190 # TweakPsiSubtree removed gap before (T0547)D503 # generation 49: best score out of 40: T0547.try1-opt2 218.58618 cost/residue, 1058 clashes 0.15035 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 67 41 / 153 = 0.26797 0.00611 ## JiggleSubtree 1 39 27 / 215 = 0.12558 0.00975 ## JiggleSegment 2 67 51 / 329 = 0.15502 0.01551 ## OptSubtree 0 2 2 / 88 = 0.02273 0.00396 ## OptSegment 0 1 0 / 67 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 49 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 51 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 82 = 0.01220 0.00025 ## TweakPhiSubtree 9 121 77 / 253 = 0.30435 0.01042 ## TweakPhiSegment 8 211 143 / 386 = 0.37047 0.01666 ## TweakPsiSubtree 0 64 42 / 195 = 0.21538 0.00747 ## TweakPsiSegment 3 148 110 / 317 = 0.34700 0.01527 ## TweakPsiPhiSubtree 28 91 52 / 158 = 0.32911 0.00565 ## TweakPsiPhiSegment 21 92 62 / 179 = 0.34637 0.00633 ## TweakHbondSubtree 3 52 30 / 128 = 0.23438 0.00479 ## TweakHbondSegment 5 81 49 / 197 = 0.24873 0.00903 ## TweakMultimer 37 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 14 9 / 46 = 0.19565 0.00205 ## FixOmega 4 1 2 / 69 = 0.02899 0.00087 ## Backrub 48 79 36 / 136 = 0.26471 0.00386 ## BigBackrub 42 51 24 / 137 = 0.17518 0.00724 ## OneRotamer 0 147 77 / 477 = 0.16143 0.01115 ## ClashingRotamer 1 0 0 / 51 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 42 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 101 = 0.00990 0.00103 ## CloseGap 0 4 0 / 57 = 0.00000 0.00000 ## HealGap 0 10 4 / 156 = 0.02564 0.00279 ## MoveGap 0 1 0 / 60 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 100 = 0.01000 0.00005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 56 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 97 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 58 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 285 = 0.00000 0.00000 ## CrossOver 0 1 0 / 49 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 34 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 35 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)G159 # TweakPsiPhi removed gap before (T0547)F340 # TweakPhi removed gap before (T0547)N11 # TweakPhi removed gap before (T0547)L389 # TweakPsiPhi removed gap before (T0547)G235 # TweakPsiPhi removed gap before (T0547)G273 # TweakPsiSubtree removed gap before (T0547)N297 # TweakPsiPhi removed gap before (T0547)Y90 # TweakPhi removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)I157 # TweakPsiSubtree removed gap before (T0547)I550 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I32 # TweakPhi removed gap before (T0547)R185 # TweakPsiPhi removed gap before (T0547)G421 # TweakPhi removed gap before (T0547)E37 # TweakPhi removed gap before (T0547)K219 # TweakPhi removed gap before (T0547)I31 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPsiPhi removed gap before (T0547)H410 # TweakPsiSubtree removed gap before (T0547)K246 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A114 # TweakPhi removed gap before (T0547)N328 # TweakPhi removed gap before (T0547)D103 # TweakPhi removed gap before (T0547)N508 # TweakPhi removed gap before (T0547)F513 # TweakPhi removed gap before (T0547)L38 # TweakPsiPhi removed gap before (T0547)E257 # TweakPsiSubtree removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)G77 # generation 50: best score out of 40: T0547.try1-opt2 218.39452 cost/residue, 1059 clashes 0.14909 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 69 45 / 157 = 0.28662 0.00699 ## JiggleSubtree 1 40 28 / 221 = 0.12670 0.01003 ## JiggleSegment 2 68 52 / 334 = 0.15569 0.01534 ## OptSubtree 1 2 2 / 91 = 0.02198 0.00383 ## OptSegment 0 1 0 / 68 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 51 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 51 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 82 = 0.01220 0.00025 ## TweakPhiSubtree 10 121 78 / 259 = 0.30116 0.01018 ## TweakPhiSegment 8 218 151 / 397 = 0.38035 0.01671 ## TweakPsiSubtree 0 65 42 / 196 = 0.21429 0.00744 ## TweakPsiSegment 3 150 112 / 322 = 0.34783 0.01512 ## TweakPsiPhiSubtree 28 93 53 / 164 = 0.32317 0.00566 ## TweakPsiPhiSegment 21 92 62 / 180 = 0.34444 0.00629 ## TweakHbondSubtree 3 53 30 / 132 = 0.22727 0.00465 ## TweakHbondSegment 5 84 49 / 203 = 0.24138 0.00877 ## TweakMultimer 37 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 20 12 / 57 = 0.21053 0.00214 ## FixOmega 4 1 2 / 70 = 0.02857 0.00085 ## Backrub 48 80 36 / 139 = 0.25899 0.00377 ## BigBackrub 45 51 25 / 144 = 0.17361 0.00701 ## OneRotamer 0 149 78 / 481 = 0.16216 0.01111 ## ClashingRotamer 1 0 0 / 52 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 43 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 102 = 0.00980 0.00102 ## CloseGap 0 4 0 / 58 = 0.00000 0.00000 ## HealGap 0 10 4 / 159 = 0.02516 0.00274 ## MoveGap 0 1 0 / 60 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 101 = 0.00990 0.00005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 56 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 1 / 100 = 0.01000 0.00266 ## InsertFragment 0 2 0 / 58 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 286 = 0.00000 0.00000 ## CrossOver 0 1 0 / 49 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 34 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 36 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)Q458 # TweakPsiSubtree removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPsiSubtree removed gap before (T0547)I540 # TweakPhi removed gap before (T0547)G192 # TweakPsiSubtree removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)G262 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPsiPhi removed gap before (T0547)L97 # TweakPsiPhi removed gap before (T0547)K196 # TweakPsiPhi removed gap before (T0547)Q56 # TweakPsiSubtree removed gap before (T0547)K219 # TweakPhi removed gap before (T0547)K260 # TweakPsiPhi removed gap before (T0547)H242 # TweakPsiSubtree removed gap before (T0547)N11 # TweakPhi removed gap before (T0547)L456 # TweakPsiPhi removed gap before (T0547)G42 # TweakPsiSubtree removed gap before (T0547)G524 # TweakPhi removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)N67 # TweakPhi removed gap before (T0547)R402 # TweakPsiPhi removed gap before (T0547)I55 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E225 # TweakPhi removed gap before (T0547)M2 # TweakPsiPhi removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)S372 # TweakPsiPhi removed gap before (T0547)L100 # TweakPsiPhi removed gap before (T0547)S475 # generation 51: best score out of 40: T0547.try1-opt2 218.36957 cost/residue, 1058 clashes 0.14909 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 71 46 / 164 = 0.28049 0.00674 ## JiggleSubtree 1 40 28 / 225 = 0.12444 0.00986 ## JiggleSegment 2 69 53 / 338 = 0.15680 0.01517 ## OptSubtree 1 2 2 / 97 = 0.02062 0.00360 ## OptSegment 0 1 0 / 68 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 51 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 52 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 82 = 0.01220 0.00025 ## TweakPhiSubtree 10 122 79 / 261 = 0.30268 0.01011 ## TweakPhiSegment 9 221 154 / 402 = 0.38308 0.01681 ## TweakPsiSubtree 0 67 43 / 203 = 0.21182 0.00728 ## TweakPsiSegment 3 153 113 / 328 = 0.34451 0.01489 ## TweakPsiPhiSubtree 28 96 55 / 167 = 0.32934 0.00569 ## TweakPsiPhiSegment 22 96 66 / 186 = 0.35484 0.00685 ## TweakHbondSubtree 3 55 31 / 137 = 0.22628 0.00466 ## TweakHbondSegment 5 87 50 / 210 = 0.23810 0.00856 ## TweakMultimer 37 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 23 13 / 60 = 0.21667 0.00220 ## FixOmega 4 1 2 / 71 = 0.02817 0.00084 ## Backrub 48 80 36 / 140 = 0.25714 0.00375 ## BigBackrub 46 53 26 / 148 = 0.17568 0.00697 ## OneRotamer 0 150 79 / 486 = 0.16255 0.01130 ## ClashingRotamer 1 0 0 / 52 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 44 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 106 = 0.00943 0.00098 ## CloseGap 0 4 0 / 58 = 0.00000 0.00000 ## HealGap 0 10 4 / 160 = 0.02500 0.00272 ## MoveGap 0 1 0 / 62 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 101 = 0.00990 0.00005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 57 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 1 / 108 = 0.00926 0.00247 ## InsertFragment 0 2 0 / 58 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 289 = 0.00000 0.00000 ## CrossOver 0 1 0 / 49 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 37 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 36 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)S581 # TweakPsiPhi removed gap before (T0547)H233 # TweakPsiSubtree removed gap before (T0547)E338 # TweakPhi removed gap before (T0547)Q448 # TweakPsiSubtree removed gap before (T0547)N65 # TweakPsiSubtree removed gap before (T0547)K177 # TweakPhi removed gap before (T0547)I567 # TweakPsiPhi removed gap before (T0547)L420 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)G262 # TweakPhi removed gap before (T0547)G42 # TweakPsiPhi removed gap before (T0547)Y255 # TweakPsiPhi removed gap before (T0547)L223 # TweakPsiPhi removed gap before (T0547)A327 # TweakPsiSubtree removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)I269 # TweakPsiSubtree removed gap before (T0547)K543 # TweakPsiSubtree removed gap before (T0547)D494 # TweakPhi removed gap before (T0547)G74 # TweakPhi removed gap before (T0547)S490 # TweakPsiSubtree removed gap before (T0547)K76 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L182 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A114 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPhi removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)K245 # TweakPsiPhi removed gap before (T0547)V516 # generation 52: best score out of 40: T0547.try1-opt2 218.32365 cost/residue, 1053 clashes 0.14909 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 72 48 / 169 = 0.28402 0.00692 ## JiggleSubtree 1 41 29 / 235 = 0.12340 0.00955 ## JiggleSegment 2 71 54 / 342 = 0.15789 0.01508 ## OptSubtree 1 2 2 / 98 = 0.02041 0.00356 ## OptSegment 0 1 0 / 68 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 51 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 54 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 82 = 0.01220 0.00025 ## TweakPhiSubtree 10 122 80 / 265 = 0.30189 0.01023 ## TweakPhiSegment 9 223 155 / 408 = 0.37990 0.01673 ## TweakPsiSubtree 0 69 45 / 208 = 0.21635 0.00711 ## TweakPsiSegment 3 157 116 / 334 = 0.34731 0.01472 ## TweakPsiPhiSubtree 28 97 55 / 170 = 0.32353 0.00559 ## TweakPsiPhiSegment 22 101 69 / 192 = 0.35938 0.00696 ## TweakHbondSubtree 3 56 31 / 140 = 0.22143 0.00456 ## TweakHbondSegment 5 91 53 / 216 = 0.24537 0.00851 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 25 15 / 62 = 0.24194 0.00246 ## FixOmega 4 1 2 / 73 = 0.02740 0.00082 ## Backrub 48 80 36 / 142 = 0.25352 0.00369 ## BigBackrub 50 53 26 / 152 = 0.17105 0.00678 ## OneRotamer 0 152 80 / 493 = 0.16227 0.01127 ## ClashingRotamer 1 0 0 / 52 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 45 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 106 = 0.00943 0.00098 ## CloseGap 0 4 0 / 60 = 0.00000 0.00000 ## HealGap 0 10 4 / 162 = 0.02469 0.00269 ## MoveGap 0 1 0 / 62 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 104 = 0.00962 0.00004 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 57 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 1 / 116 = 0.00862 0.00230 ## InsertFragment 0 2 0 / 59 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 291 = 0.00000 0.00000 ## CrossOver 0 1 0 / 50 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 9 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 37 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 36 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)H379 # TweakPhi removed gap before (T0547)L385 # TweakPhi removed gap before (T0547)Q400 # TweakPsiPhi removed gap before (T0547)W454 # TweakPhi removed gap before (T0547)D380 # TweakPsiPhi removed gap before (T0547)L596 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L408 # TweakPsiSubtree removed gap before (T0547)D401 # TweakPhi removed gap before (T0547)N575 # TweakPsiSubtree removed gap before (T0547)E338 # TweakPsiSubtree removed gap before (T0547)A69 # TweakPhi removed gap before (T0547)K17 # TweakPsiPhi removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)H568 # TweakPsiPhi removed gap before (T0547)Q424 # TweakPsiSubtree removed gap before (T0547)F318 # TweakPhi removed gap before (T0547)Y366 # TweakPhi removed gap before (T0547)G143 # TweakPsiSubtree removed gap before (T0547)H242 # TweakPsiPhi removed gap before (T0547)E552 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPhi removed gap before (T0547)E406 # TweakPhi removed gap before (T0547)N585 # TweakPhi removed gap before (T0547)H532 # generation 53: best score out of 40: T0547.try1-opt2 218.30310 cost/residue, 1061 clashes 0.14935 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 74 49 / 173 = 0.28324 0.00685 ## JiggleSubtree 1 41 29 / 238 = 0.12185 0.00943 ## JiggleSegment 2 72 55 / 354 = 0.15537 0.01467 ## OptSubtree 1 2 2 / 103 = 0.01942 0.00339 ## OptSegment 0 1 0 / 68 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 52 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 56 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 83 = 0.01205 0.00024 ## TweakPhiSubtree 10 122 80 / 267 = 0.29963 0.01015 ## TweakPhiSegment 10 230 160 / 419 = 0.38186 0.01660 ## TweakPsiSubtree 0 69 45 / 212 = 0.21226 0.00698 ## TweakPsiSegment 3 158 117 / 340 = 0.34412 0.01467 ## TweakPsiPhiSubtree 29 98 55 / 171 = 0.32164 0.00556 ## TweakPsiPhiSegment 23 105 71 / 196 = 0.36224 0.00689 ## TweakHbondSubtree 4 58 32 / 144 = 0.22222 0.00448 ## TweakHbondSegment 5 93 55 / 222 = 0.24775 0.00847 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 26 15 / 64 = 0.23438 0.00238 ## FixOmega 4 1 2 / 73 = 0.02740 0.00082 ## Backrub 48 82 37 / 144 = 0.25694 0.00365 ## BigBackrub 51 54 27 / 157 = 0.17197 0.00662 ## OneRotamer 0 154 81 / 499 = 0.16232 0.01114 ## ClashingRotamer 1 0 0 / 52 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 46 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 109 = 0.00917 0.00095 ## CloseGap 0 4 0 / 60 = 0.00000 0.00000 ## HealGap 0 10 4 / 162 = 0.02469 0.00269 ## MoveGap 0 1 0 / 63 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 104 = 0.00962 0.00004 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 58 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 1 / 121 = 0.00826 0.00220 ## InsertFragment 0 2 0 / 59 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 295 = 0.00000 0.00000 ## CrossOver 0 1 0 / 52 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 9 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 37 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 38 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)N201 # TweakPsiSubtree removed gap before (T0547)W194 # TweakPsiPhi removed gap before (T0547)K17 # TweakPhi removed gap before (T0547)T154 # TweakPsiPhi removed gap before (T0547)Q588 # TweakPhi removed gap before (T0547)V98 # TweakPsiPhi removed gap before (T0547)L332 # TweakPhi removed gap before (T0547)L116 # TweakPhi removed gap before (T0547)S608 # TweakPhi removed gap before (T0547)D562 # TweakPsiSubtree removed gap before (T0547)F282 # TweakPsiSubtree removed gap before (T0547)E386 # TweakPsiSubtree removed gap before (T0547)L116 # TweakPsiPhi removed gap before (T0547)I32 # TweakPsiSubtree removed gap before (T0547)E240 # TweakPsiSubtree removed gap before (T0547)L429 # TweakPsiPhi removed gap before (T0547)H384 # TweakPsiSubtree removed gap before (T0547)D33 # TweakPhi removed gap before (T0547)E257 # TweakPhi removed gap before (T0547)L160 # TweakPsiPhi removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)E457 # TweakPsiSubtree removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)Y363 # TweakPsiSubtree removed gap before (T0547)N603 # TweakPhi removed gap before (T0547)L596 # TweakPhi removed gap before (T0547)I369 # TweakPsiSubtree removed gap before (T0547)L385 # TweakPsiSubtree removed gap before (T0547)H187 # TweakPsiPhi removed gap before (T0547)F134 # TweakPsiPhi removed gap before (T0547)G159 # TweakPsiSubtree removed gap before (T0547)S188 # TweakPhi removed gap before (T0547)I538 # TweakPsiSubtree removed gap before (T0547)K27 # TweakPsiPhi removed gap before (T0547)T531 # TweakPsiSubtree removed gap before (T0547)L38 # TweakPhi removed gap before (T0547)L456 # TweakPsiSubtree removed gap before (T0547)G262 # TweakPsiSubtree removed gap before (T0547)V442 # generation 54: best score out of 40: T0547.try1-opt2 217.80453 cost/residue, 1050 clashes 0.14936 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 75 49 / 176 = 0.27841 0.00674 ## JiggleSubtree 1 42 30 / 240 = 0.12500 0.00947 ## JiggleSegment 2 73 56 / 359 = 0.15599 0.01493 ## OptSubtree 1 2 2 / 108 = 0.01852 0.00323 ## OptSegment 0 1 0 / 68 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 52 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 57 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 84 = 0.01190 0.00024 ## TweakPhiSubtree 10 127 83 / 275 = 0.30182 0.00988 ## TweakPhiSegment 10 233 162 / 424 = 0.38208 0.01643 ## TweakPsiSubtree 0 69 45 / 219 = 0.20548 0.00675 ## TweakPsiSegment 3 161 118 / 350 = 0.33714 0.01582 ## TweakPsiPhiSubtree 30 99 55 / 174 = 0.31609 0.00547 ## TweakPsiPhiSegment 24 109 73 / 203 = 0.35961 0.00675 ## TweakHbondSubtree 4 60 33 / 148 = 0.22297 0.00436 ## TweakHbondSegment 5 93 55 / 223 = 0.24664 0.00843 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 27 16 / 67 = 0.23881 0.00250 ## FixOmega 4 1 2 / 73 = 0.02740 0.00082 ## Backrub 48 83 37 / 146 = 0.25342 0.00360 ## BigBackrub 51 54 27 / 159 = 0.16981 0.00654 ## OneRotamer 0 155 81 / 507 = 0.15976 0.01097 ## ClashingRotamer 1 0 0 / 53 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 47 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 110 = 0.00909 0.00094 ## CloseGap 0 4 0 / 60 = 0.00000 0.00000 ## HealGap 0 10 4 / 165 = 0.02424 0.00264 ## MoveGap 0 1 0 / 65 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 105 = 0.00952 0.00004 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 59 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 1 / 125 = 0.00800 0.00213 ## InsertFragment 0 2 0 / 59 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 302 = 0.00000 0.00000 ## CrossOver 0 1 0 / 52 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 9 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 37 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 40 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)I382 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G272 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPhi removed gap before (T0547)A263 # TweakPhi removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)S581 # TweakPsiPhi removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)S188 # TweakPsiPhi removed gap before (T0547)E164 # TweakPsiSubtree removed gap before (T0547)V184 # TweakPhi removed gap before (T0547)I540 # TweakPsiSubtree removed gap before (T0547)K587 # TweakPhi removed gap before (T0547)H242 # TweakPsiSubtree removed gap before (T0547)L248 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)N425 # TweakPsiSubtree removed gap before (T0547)S403 # TweakPhi removed gap before (T0547)D602 # TweakPsiSubtree removed gap before (T0547)A195 # TweakPsiSubtree removed gap before (T0547)K526 # TweakPhi removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)L139 # TweakPsiPhi removed gap before (T0547)S475 # TweakPsiPhi removed gap before (T0547)Y440 # TweakPhi removed gap before (T0547)S579 # TweakPsiPhi removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)G199 # TweakPsiSubtree removed gap before (T0547)L234 # TweakPhi removed gap before (T0547)I382 # TweakPsiPhi removed gap before (T0547)F324 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)N289 # TweakPsiPhi removed gap before (T0547)L606 # generation 55: best score out of 40: T0547.try1-opt2 217.71822 cost/residue, 1051 clashes 0.14924 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 77 51 / 183 = 0.27869 0.00665 ## JiggleSubtree 1 43 32 / 246 = 0.13008 0.00940 ## JiggleSegment 2 75 58 / 362 = 0.16022 0.01517 ## OptSubtree 1 2 2 / 109 = 0.01835 0.00320 ## OptSegment 0 1 0 / 69 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 52 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 59 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 84 = 0.01190 0.00024 ## TweakPhiSubtree 10 129 83 / 281 = 0.29537 0.00967 ## TweakPhiSegment 10 235 164 / 432 = 0.37963 0.01626 ## TweakPsiSubtree 0 69 46 / 220 = 0.20909 0.00674 ## TweakPsiSegment 3 166 123 / 360 = 0.34167 0.01549 ## TweakPsiPhiSubtree 30 101 55 / 177 = 0.31073 0.00537 ## TweakPsiPhiSegment 25 112 76 / 209 = 0.36364 0.00704 ## TweakHbondSubtree 5 60 33 / 149 = 0.22148 0.00434 ## TweakHbondSegment 5 94 55 / 225 = 0.24444 0.00836 ## TweakMultimer 42 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 30 18 / 72 = 0.25000 0.00242 ## FixOmega 4 1 2 / 73 = 0.02740 0.00082 ## Backrub 48 86 38 / 150 = 0.25333 0.00377 ## BigBackrub 55 56 27 / 167 = 0.16168 0.00623 ## OneRotamer 0 157 83 / 515 = 0.16117 0.01128 ## ClashingRotamer 1 0 0 / 53 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 47 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 111 = 0.00901 0.00094 ## CloseGap 0 4 0 / 60 = 0.00000 0.00000 ## HealGap 0 10 4 / 167 = 0.02395 0.00261 ## MoveGap 0 1 0 / 65 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 106 = 0.00943 0.00004 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 60 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 1 / 130 = 0.00769 0.00205 ## InsertFragment 0 2 0 / 59 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 307 = 0.00000 0.00000 ## CrossOver 0 1 0 / 52 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 9 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 38 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 42 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)F510 # TweakPsiSubtree removed gap before (T0547)L563 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPsiPhi removed gap before (T0547)G273 # TweakPhi removed gap before (T0547)I556 # TweakPsiSubtree removed gap before (T0547)R577 # TweakPhi removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPhi removed gap before (T0547)G205 # TweakPhi removed gap before (T0547)E552 # TweakPhi removed gap before (T0547)R173 # TweakPhi removed gap before (T0547)K219 # TweakPhi removed gap before (T0547)Y440 # TweakPsiSubtree removed gap before (T0547)A195 # TweakPsiPhi removed gap before (T0547)G252 # TweakPsiSubtree removed gap before (T0547)T534 # TweakPsiPhi removed gap before (T0547)Y90 # TweakPsiPhi removed gap before (T0547)L97 # TweakPhi removed gap before (T0547)G262 # TweakPsiSubtree removed gap before (T0547)Q458 # TweakPsiPhi removed gap before (T0547)D380 # TweakPsiSubtree removed gap before (T0547)D564 # TweakPhi removed gap before (T0547)E338 # TweakPhi removed gap before (T0547)G133 # TweakPsiSubtree removed gap before (T0547)L583 # TweakPsiPhi removed gap before (T0547)S236 # TweakPsiPhi removed gap before (T0547)H532 # TweakPsiSubtree removed gap before (T0547)K102 # TweakPsiSubtree removed gap before (T0547)K260 # TweakPsiPhi removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)S490 # TweakPsiPhi removed gap before (T0547)I550 # TweakPsiSubtree removed gap before (T0547)T534 # generation 56: best score out of 40: T0547.try1-opt2 217.64886 cost/residue, 1054 clashes 0.14895 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 79 54 / 189 = 0.28571 0.00698 ## JiggleSubtree 1 44 33 / 251 = 0.13147 0.00934 ## JiggleSegment 2 77 61 / 368 = 0.16576 0.01582 ## OptSubtree 1 2 2 / 112 = 0.01786 0.00311 ## OptSegment 0 1 0 / 69 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 52 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 59 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 85 = 0.01176 0.00024 ## TweakPhiSubtree 10 133 87 / 289 = 0.30104 0.00978 ## TweakPhiSegment 10 237 165 / 437 = 0.37757 0.01607 ## TweakPsiSubtree 0 70 48 / 222 = 0.21622 0.00707 ## TweakPsiSegment 3 170 125 / 371 = 0.33693 0.01508 ## TweakPsiPhiSubtree 30 104 55 / 181 = 0.30387 0.00525 ## TweakPsiPhiSegment 25 115 77 / 217 = 0.35484 0.00683 ## TweakHbondSubtree 5 61 33 / 152 = 0.21711 0.00425 ## TweakHbondSegment 5 96 56 / 230 = 0.24348 0.00837 ## TweakMultimer 43 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 30 19 / 73 = 0.26027 0.00241 ## FixOmega 4 1 2 / 73 = 0.02740 0.00082 ## Backrub 48 87 38 / 151 = 0.25166 0.00375 ## BigBackrub 55 57 27 / 169 = 0.15976 0.00615 ## OneRotamer 0 160 86 / 524 = 0.16412 0.01182 ## ClashingRotamer 1 0 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 50 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 113 = 0.00885 0.00092 ## CloseGap 0 4 0 / 60 = 0.00000 0.00000 ## HealGap 0 10 4 / 168 = 0.02381 0.00259 ## MoveGap 0 1 0 / 65 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 107 = 0.00935 0.00004 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 60 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 1 / 133 = 0.00752 0.00200 ## InsertFragment 0 2 0 / 59 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 313 = 0.00000 0.00000 ## CrossOver 0 1 0 / 53 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 9 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 39 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 43 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)R70 # TweakPhi removed gap before (T0547)R577 # TweakPhi removed gap before (T0547)G610 # TweakPsiPhi removed gap before (T0547)G64 # TweakPsiPhi removed gap before (T0547)I169 # TweakPsiSubtree removed gap before (T0547)N284 # TweakPsiSubtree removed gap before (T0547)K260 # TweakPsiSubtree removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)M229 # TweakPhi removed gap before (T0547)G199 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Y605 # TweakPhi removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)L529 # TweakPhi removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPsiPhi removed gap before (T0547)H187 # TweakPhi removed gap before (T0547)D40 # TweakPsiSubtree removed gap before (T0547)N67 # TweakPsiSubtree removed gap before (T0547)L606 # TweakPsiPhi removed gap before (T0547)A307 # TweakPhi removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)I556 # TweakPsiSubtree removed gap before (T0547)S485 # TweakPsiPhi removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)E37 # TweakPsiPhi removed gap before (T0547)L116 # TweakPhi removed gap before (T0547)T531 # TweakPsiSubtree removed gap before (T0547)E548 # TweakPsiPhi removed gap before (T0547)K423 # TweakPhi removed gap before (T0547)S475 # generation 57: best score out of 40: T0547.try1-opt2 217.62547 cost/residue, 1051 clashes 0.14894 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 82 55 / 194 = 0.28351 0.00720 ## JiggleSubtree 1 45 34 / 259 = 0.13127 0.00932 ## JiggleSegment 2 78 61 / 372 = 0.16398 0.01565 ## OptSubtree 1 2 2 / 115 = 0.01739 0.00303 ## OptSegment 0 1 0 / 70 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 52 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 59 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 85 = 0.01176 0.00024 ## TweakPhiSubtree 10 136 88 / 294 = 0.29932 0.00971 ## TweakPhiSegment 10 242 170 / 446 = 0.38117 0.01604 ## TweakPsiSubtree 0 70 48 / 225 = 0.21333 0.00698 ## TweakPsiSegment 3 172 127 / 380 = 0.33421 0.01480 ## TweakPsiPhiSubtree 30 104 55 / 182 = 0.30220 0.00523 ## TweakPsiPhiSegment 25 120 79 / 225 = 0.35111 0.00675 ## TweakHbondSubtree 5 62 34 / 154 = 0.22078 0.00422 ## TweakHbondSegment 5 99 56 / 240 = 0.23333 0.00802 ## TweakMultimer 45 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 30 20 / 76 = 0.26316 0.00235 ## FixOmega 4 1 2 / 73 = 0.02740 0.00082 ## Backrub 50 89 38 / 153 = 0.24837 0.00370 ## BigBackrub 55 58 28 / 170 = 0.16471 0.00639 ## OneRotamer 0 164 89 / 540 = 0.16481 0.01160 ## ClashingRotamer 1 0 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 50 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 114 = 0.00877 0.00091 ## CloseGap 0 4 0 / 60 = 0.00000 0.00000 ## HealGap 0 10 4 / 168 = 0.02381 0.00259 ## MoveGap 0 1 0 / 65 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 108 = 0.00926 0.00004 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 1 / 139 = 0.00719 0.00192 ## InsertFragment 0 2 0 / 59 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 314 = 0.00000 0.00000 ## CrossOver 0 1 0 / 53 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 9 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 39 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 43 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)N123 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)L600 # TweakPsiPhi removed gap before (T0547)D434 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiPhi removed gap before (T0547)L271 # TweakPsiSubtree removed gap before (T0547)D168 # TweakPhi removed gap before (T0547)G544 # TweakPsiSubtree removed gap before (T0547)L529 # TweakPsiPhi removed gap before (T0547)F498 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)E576 # TweakPsiSubtree removed gap before (T0547)D466 # TweakPhi removed gap before (T0547)I269 # TweakPhi removed gap before (T0547)L163 # TweakPsiSubtree removed gap before (T0547)A146 # TweakPsiSubtree removed gap before (T0547)S112 # TweakPhi removed gap before (T0547)K44 # TweakPsiSubtree removed gap before (T0547)L394 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A147 # TweakPhi removed gap before (T0547)E285 # TweakPsiSubtree removed gap before (T0547)S445 # TweakPsiPhi removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)Q237 # TweakPsiSubtree removed gap before (T0547)A214 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPhi removed gap before (T0547)N161 # Closed gap before (T0547)L593 # TweakPsiPhi removed gap before (T0547)Q437 # TweakPsiPhi removed gap before (T0547)K589 # TweakPsiSubtree removed gap before (T0547)N24 # TweakPhi removed gap before (T0547)H500 # TweakPhi removed gap before (T0547)N459 # TweakPhi removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)A268 # TweakPsiPhi removed gap before (T0547)A431 # TweakPhi removed gap before (T0547)I15 # TweakPhi removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)G262 # TweakPsiSubtree removed gap before (T0547)D316 # generation 58: best score out of 40: T0547.try1-opt2 217.55243 cost/residue, 1053 clashes 0.14872 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 84 56 / 199 = 0.28141 0.00713 ## JiggleSubtree 1 45 34 / 261 = 0.13027 0.00925 ## JiggleSegment 2 81 64 / 383 = 0.16710 0.01581 ## OptSubtree 1 2 2 / 121 = 0.01653 0.00288 ## OptSegment 0 1 0 / 70 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 52 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 59 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 85 = 0.01176 0.00024 ## TweakPhiSubtree 10 138 90 / 301 = 0.29900 0.00988 ## TweakPhiSegment 10 246 173 / 456 = 0.37939 0.01579 ## TweakPsiSubtree 0 71 49 / 227 = 0.21586 0.00694 ## TweakPsiSegment 3 178 132 / 392 = 0.33673 0.01454 ## TweakPsiPhiSubtree 30 106 56 / 184 = 0.30435 0.00519 ## TweakPsiPhiSegment 25 120 79 / 232 = 0.34052 0.00654 ## TweakHbondSubtree 5 63 35 / 156 = 0.22436 0.00421 ## TweakHbondSegment 5 100 57 / 245 = 0.23265 0.00791 ## TweakMultimer 45 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 31 21 / 78 = 0.26923 0.00261 ## FixOmega 4 1 2 / 73 = 0.02740 0.00082 ## Backrub 51 91 40 / 160 = 0.25000 0.00371 ## BigBackrub 56 58 28 / 171 = 0.16374 0.00635 ## OneRotamer 0 167 91 / 546 = 0.16667 0.01185 ## ClashingRotamer 1 0 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 50 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 115 = 0.00870 0.00090 ## CloseGap 0 4 0 / 61 = 0.00000 0.00000 ## HealGap 0 10 4 / 169 = 0.02367 0.00258 ## MoveGap 0 1 0 / 65 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 108 = 0.00926 0.00004 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 1 / 142 = 0.00704 0.00188 ## InsertFragment 0 2 0 / 60 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 318 = 0.00000 0.00000 ## CrossOver 0 1 0 / 54 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 9 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 39 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 44 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)R402 # TweakPhi removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)N161 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)T239 # TweakPsiPhi removed gap before (T0547)G455 # TweakPsiPhi removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)R323 # Closed gap before (T0547)L593 # TweakPsiPhi removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)N289 # TweakPhi removed gap before (T0547)L574 # TweakPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)N88 # TweakPsiPhi removed gap before (T0547)V331 # TweakPsiSubtree removed gap before (T0547)I359 # TweakPsiSubtree removed gap before (T0547)K102 # TweakPsiPhi removed gap before (T0547)F599 # TweakPsiPhi removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)G78 # TweakPhi removed gap before (T0547)D103 # TweakPsiPhi removed gap before (T0547)E220 # generation 59: best score out of 40: T0547.try1-opt2 216.62283 cost/residue, 1016 clashes 0.13090 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 86 57 / 202 = 0.28218 0.00713 ## JiggleSubtree 1 45 34 / 267 = 0.12734 0.00904 ## JiggleSegment 2 81 64 / 400 = 0.16000 0.01514 ## OptSubtree 1 2 2 / 121 = 0.01653 0.00288 ## OptSegment 0 1 0 / 72 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 54 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 59 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 85 = 0.01176 0.00024 ## TweakPhiSubtree 10 138 90 / 306 = 0.29412 0.00972 ## TweakPhiSegment 10 248 174 / 461 = 0.37744 0.01565 ## TweakPsiSubtree 0 73 51 / 230 = 0.22174 0.00694 ## TweakPsiSegment 3 180 133 / 395 = 0.33671 0.01444 ## TweakPsiPhiSubtree 30 106 57 / 185 = 0.30811 0.00519 ## TweakPsiPhiSegment 27 125 82 / 239 = 0.34310 0.00664 ## TweakHbondSubtree 6 63 35 / 160 = 0.21875 0.00411 ## TweakHbondSegment 5 101 58 / 249 = 0.23293 0.00779 ## TweakMultimer 47 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 31 21 / 79 = 0.26582 0.00257 ## FixOmega 4 1 2 / 73 = 0.02740 0.00082 ## Backrub 51 95 42 / 166 = 0.25301 0.00366 ## BigBackrub 58 60 30 / 176 = 0.17045 0.00644 ## OneRotamer 0 170 93 / 557 = 0.16697 0.01182 ## ClashingRotamer 1 0 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 50 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 115 = 0.00870 0.00090 ## CloseGap 0 4 0 / 62 = 0.00000 0.00000 ## HealGap 0 10 4 / 172 = 0.02326 0.00253 ## MoveGap 0 1 0 / 65 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 109 = 0.00917 0.00004 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 1 / 145 = 0.00690 0.00184 ## InsertFragment 0 2 0 / 61 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 321 = 0.00000 0.00000 ## CrossOver 0 1 0 / 55 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 9 = 0.00000 0.00000 ## CrossAndInsert 2 1 1 / 40 = 0.02500 0.02396 ## ReduceClash 0 1 0 / 45 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)L583 # TweakPhi removed gap before (T0547)V98 # TweakPsiSubtree removed gap before (T0547)N13 # TweakPsiSubtree removed gap before (T0547)G190 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)V215 # TweakPsiSubtree removed gap before (T0547)L441 # Closed gap before (T0547)L593 # TweakPsiPhi removed gap before (T0547)I570 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F232 # TweakPsiPhi removed gap before (T0547)S581 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Q58 # TweakPsiPhi removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)N65 # TweakPsiSubtree removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)N201 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)T482 # generation 60: best score out of 40: T0547.try1-opt2 216.45981 cost/residue, 1008 clashes 0.13102 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 88 58 / 205 = 0.28293 0.00702 ## JiggleSubtree 1 45 34 / 269 = 0.12639 0.00897 ## JiggleSegment 2 83 66 / 405 = 0.16296 0.01537 ## OptSubtree 1 2 2 / 123 = 0.01626 0.00284 ## OptSegment 0 1 0 / 72 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 54 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 60 = 0.00000 0.00000 ## ShiftSegment 0 3 1 / 86 = 0.01163 0.00024 ## TweakPhiSubtree 10 139 91 / 308 = 0.29545 0.00967 ## TweakPhiSegment 10 251 175 / 464 = 0.37716 0.01590 ## TweakPsiSubtree 0 73 51 / 232 = 0.21983 0.00688 ## TweakPsiSegment 3 184 136 / 401 = 0.33915 0.01470 ## TweakPsiPhiSubtree 30 107 58 / 186 = 0.31183 0.00528 ## TweakPsiPhiSegment 27 128 83 / 242 = 0.34298 0.00657 ## TweakHbondSubtree 6 65 36 / 162 = 0.22222 0.00406 ## TweakHbondSegment 5 102 58 / 252 = 0.23016 0.00770 ## TweakMultimer 47 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 32 21 / 81 = 0.25926 0.00251 ## FixOmega 4 1 2 / 73 = 0.02740 0.00082 ## Backrub 52 98 44 / 170 = 0.25882 0.00373 ## BigBackrub 60 60 30 / 176 = 0.17045 0.00644 ## OneRotamer 0 171 94 / 564 = 0.16667 0.01168 ## ClashingRotamer 1 0 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 4 4 0 / 51 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 119 = 0.00840 0.00087 ## CloseGap 0 4 0 / 63 = 0.00000 0.00000 ## HealGap 0 10 4 / 172 = 0.02326 0.00253 ## MoveGap 0 1 0 / 65 = 0.00000 0.00000 ## ReduceConstraint 0 2 1 / 109 = 0.00917 0.00004 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 1 / 145 = 0.00690 0.00184 ## InsertFragment 0 2 0 / 62 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 322 = 0.00000 0.00000 ## CrossOver 0 1 0 / 55 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 9 = 0.00000 0.00000 ## CrossAndInsert 2 1 1 / 83 = 0.01205 0.01155 ## ReduceClash 0 1 0 / 45 = 0.00000 0.00000 # iteration 1 # filling pool to have 40 conformations # TweakPsiSubtree removed gap before (T0547)D383 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)D572 # best score in initial pool out of 40: T0547.try1-opt2 at pool[13] 223.29034 cost/residue, 1199 clashes 0.16151 breaks # optimizing backbone with 40 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 16 conformations from old pool # TweakPsiSubtree removed gap before (T0547)F324 # TweakPsiSubtree removed gap before (T0547)Q281 # TweakPsiSubtree removed gap before (T0547)S475 # TweakPhi removed gap before (T0547)I15 # TweakPhi removed gap before (T0547)E308 # TweakPhi removed gap before (T0547)D7 # TweakPsiPhi removed gap before (T0547)Y83 # TweakPhi removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)I570 # TweakPsiSubtree removed gap before (T0547)G78 # TweakPsiSubtree removed gap before (T0547)G205 # generation 1: best score out of 40: T0547.try1-opt2 223.29034 cost/residue, 1199 clashes 0.16151 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 3 1 / 4 = 0.25000 0.03292 ## OptSubtree 0 1 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 1 3 / 4 = 0.75000 0.03749 ## TweakPsiSubtree 0 1 1 / 4 = 0.25000 1.76537 ## TweakPsiSegment 0 1 1 / 2 = 0.50000 0.00169 ## TweakPsiPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 1 / 1 = 1.00000 1.03860 ## TweakHbondSegment 0 1 1 / 5 = 0.20000 0.06387 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 0 1 1 / 2 = 0.50000 0.01164 ## BigBackrub 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 9 5 / 16 = 0.31250 0.05749 ## ClashingRotamer 0 0 0 / 1 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 1 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 2 / 3 = 0.66667 3.35232 ## CloseGap 0 1 2 / 4 = 0.50000 2.86026 ## HealGap 0 3 0 / 4 = 0.00000 0.00000 ## MoveGap 0 2 0 / 2 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 6 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 0 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 4 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 2 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 10 = 0.10000 0.14803 ## CrossOver 1 0 0 / 0 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 1 / 2 = 0.50000 3.31746 ## ReduceClash 0 1 0 / 2 = 0.00000 0.00000 # Closed gap before (T0547)I200 # TweakPhi removed gap before (T0547)N601 # TweakPsiPhi removed gap before (T0547)V504 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I369 # Closed gap before (T0547)Y106 # TweakPsiSubtree removed gap before (T0547)P52 # TweakPsiSubtree removed gap before (T0547)A165 # TweakPsiPhi removed gap before (T0547)D401 # TweakPsiSubtree removed gap before (T0547)A247 # TweakPhi removed gap before (T0547)F447 # TweakPhi removed gap before (T0547)G159 # generation 2: best score out of 40: T0547.try1-opt2 223.07574 cost/residue, 1203 clashes 0.15480 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 1 / 3 = 0.33333 0.01839 ## JiggleSubtree 0 1 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 5 1 / 6 = 0.16667 0.02195 ## OptSubtree 0 1 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 3 4 / 7 = 0.57143 0.05155 ## TweakPsiSubtree 0 2 1 / 5 = 0.20000 1.41229 ## TweakPsiSegment 0 2 1 / 4 = 0.25000 0.00085 ## TweakPsiPhiSubtree 0 1 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 3 / 4 = 0.75000 0.26244 ## TweakHbondSegment 0 1 1 / 6 = 0.16667 0.05322 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## FixOmega 0 0 0 / 7 = 0.00000 0.00000 ## Backrub 1 2 1 / 3 = 0.33333 0.00776 ## BigBackrub 0 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 14 7 / 26 = 0.26923 0.03705 ## ClashingRotamer 0 0 0 / 1 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 4 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 3 / 7 = 0.42857 1.57937 ## CloseGap 0 4 2 / 12 = 0.16667 0.95342 ## HealGap 0 5 1 / 11 = 0.09091 0.01951 ## MoveGap 0 2 0 / 3 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 9 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 1 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 8 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 4 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 22 = 0.04545 0.06729 ## CrossOver 1 0 0 / 2 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 1 / 9 = 0.11111 0.73721 ## ReduceClash 0 1 0 / 2 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)I317 # TweakPsiSubtree removed gap before (T0547)T531 # TweakPhi removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)R173 # TweakPsiSubtree removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)A345 # TweakPsiSubtree removed gap before (T0547)I550 # TweakPhi removed gap before (T0547)F514 # TweakPsiSubtree removed gap before (T0547)N328 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)T154 # TweakPsiSubtree removed gap before (T0547)L244 # TweakPsiSubtree removed gap before (T0547)Q281 # TweakPhi removed gap before (T0547)S208 # Closed gap before (T0547)Y106 # TweakPsiPhi removed gap before (T0547)E125 # generation 3: best score out of 40: T0547.try1-opt2 223.05289 cost/residue, 1194 clashes 0.16155 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 1 / 4 = 0.25000 0.01379 ## JiggleSubtree 0 2 1 / 7 = 0.14286 0.01688 ## JiggleSegment 0 8 3 / 11 = 0.27273 0.01728 ## OptSubtree 0 1 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 1 4 1 / 5 = 0.20000 0.00046 ## TweakPhiSegment 0 4 4 / 10 = 0.40000 0.03609 ## TweakPsiSubtree 0 5 1 / 8 = 0.12500 0.88268 ## TweakPsiSegment 0 6 2 / 10 = 0.20000 0.00098 ## TweakPsiPhiSubtree 0 1 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 1 / 2 = 0.50000 0.00053 ## TweakHbondSubtree 0 3 4 / 6 = 0.66667 0.17865 ## TweakHbondSegment 0 1 1 / 9 = 0.11111 0.03548 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## FixOmega 0 0 0 / 9 = 0.00000 0.00000 ## Backrub 2 5 2 / 6 = 0.33333 0.00462 ## BigBackrub 0 2 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 19 9 / 35 = 0.25714 0.02835 ## ClashingRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 5 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 3 / 11 = 0.27273 1.00505 ## CloseGap 0 4 2 / 14 = 0.14286 0.81722 ## HealGap 0 6 2 / 17 = 0.11765 0.02561 ## MoveGap 0 2 0 / 4 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 11 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 3 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 13 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 6 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 29 = 0.03448 0.05104 ## CrossOver 1 1 1 / 6 = 0.16667 0.00443 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 1 / 13 = 0.07692 0.51038 ## ReduceClash 0 1 0 / 4 = 0.00000 0.00000 # Closed gap before (T0547)L593 # TweakPsiPhi removed gap before (T0547)S387 # TweakPsiSubtree removed gap before (T0547)S581 # TweakPsiSubtree removed gap before (T0547)I23 # TweakPhi removed gap before (T0547)E250 # TweakPhi removed gap before (T0547)Y605 # TweakPsiSubtree removed gap before (T0547)A251 # TweakPsiPhi removed gap before (T0547)L499 # TweakPhi removed gap before (T0547)I59 # generation 4: best score out of 40: T0547.try1-opt2 223.01735 cost/residue, 1190 clashes 0.16157 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 1 / 4 = 0.25000 0.01379 ## JiggleSubtree 0 5 1 / 11 = 0.09091 0.01074 ## JiggleSegment 0 9 4 / 15 = 0.26667 0.02941 ## OptSubtree 0 1 0 / 11 = 0.00000 0.00000 ## OptSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 1 5 2 / 6 = 0.33333 0.00184 ## TweakPhiSegment 0 7 6 / 13 = 0.46154 0.03117 ## TweakPsiSubtree 0 7 2 / 11 = 0.18182 0.64285 ## TweakPsiSegment 0 6 2 / 10 = 0.20000 0.00098 ## TweakPsiPhiSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 3 1 / 3 = 0.33333 0.00035 ## TweakHbondSubtree 0 5 5 / 9 = 0.55556 0.12332 ## TweakHbondSegment 0 3 1 / 13 = 0.07692 0.02456 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## FixOmega 0 0 0 / 10 = 0.00000 0.00000 ## Backrub 2 6 2 / 7 = 0.28571 0.00396 ## BigBackrub 0 3 0 / 7 = 0.00000 0.00000 ## OneRotamer 0 26 12 / 45 = 0.26667 0.02437 ## ClashingRotamer 0 0 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 6 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 3 / 20 = 0.15000 0.55278 ## CloseGap 0 4 2 / 18 = 0.11111 0.63561 ## HealGap 0 6 2 / 23 = 0.08696 0.01893 ## MoveGap 0 2 0 / 5 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 14 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 17 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 8 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 39 = 0.02564 0.03796 ## CrossOver 1 1 1 / 8 = 0.12500 0.00332 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 1 / 17 = 0.05882 0.39029 ## ReduceClash 0 1 0 / 8 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)L394 # TweakPhi removed gap before (T0547)G192 # TweakPsiSubtree removed gap before (T0547)Y279 # TweakPhi removed gap before (T0547)N404 # TweakPsiSubtree removed gap before (T0547)D501 # Closed gap before (T0547)G5 # TweakPsiSubtree removed gap before (T0547)G192 # TweakPsiSubtree removed gap before (T0547)L266 # TweakPsiSubtree removed gap before (T0547)G487 # TweakPsiPhi removed gap before (T0547)T256 # Closed gap before (T0547)Y106 # TweakPsiSubtree removed gap before (T0547)Q424 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F66 # TweakPsiSubtree removed gap before (T0547)D602 # TweakPhi removed gap before (T0547)I167 # TweakPhi removed gap before (T0547)N601 # TweakPsiSubtree removed gap before (T0547)R323 # TweakPhi removed gap before (T0547)I23 # BackrubGuts cancelled---proline or break # Closed gap before (T0547)Y106 # TweakPsiPhi removed gap before (T0547)L429 # TweakPhi removed gap before (T0547)S236 # generation 5: best score out of 40: T0547.try1-opt2 222.97751 cost/residue, 1190 clashes 0.16157 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 1 / 5 = 0.20000 0.01104 ## JiggleSubtree 0 5 1 / 13 = 0.07692 0.00909 ## JiggleSegment 0 9 4 / 18 = 0.22222 0.02451 ## OptSubtree 0 1 0 / 11 = 0.00000 0.00000 ## OptSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 2 7 2 / 10 = 0.20000 0.00111 ## TweakPhiSegment 0 9 6 / 15 = 0.40000 0.02702 ## TweakPsiSubtree 0 11 4 / 18 = 0.22222 0.39726 ## TweakPsiSegment 0 9 2 / 13 = 0.15385 0.00075 ## TweakPsiPhiSubtree 1 3 2 / 6 = 0.33333 0.01358 ## TweakPsiPhiSegment 0 3 1 / 3 = 0.33333 0.00035 ## TweakHbondSubtree 0 6 5 / 12 = 0.41667 0.09249 ## TweakHbondSegment 1 7 3 / 17 = 0.17647 0.01995 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## FixOmega 0 0 0 / 10 = 0.00000 0.00000 ## Backrub 4 8 2 / 9 = 0.22222 0.00308 ## BigBackrub 0 4 0 / 8 = 0.00000 0.00000 ## OneRotamer 0 27 12 / 56 = 0.21429 0.01958 ## ClashingRotamer 0 0 0 / 5 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 6 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 3 / 29 = 0.10345 0.38123 ## CloseGap 0 5 2 / 26 = 0.07692 0.44004 ## HealGap 0 6 2 / 25 = 0.08000 0.01742 ## MoveGap 0 2 0 / 6 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 15 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 18 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 12 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 49 = 0.02041 0.03021 ## CrossOver 1 1 1 / 9 = 0.11111 0.00295 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 1 / 24 = 0.04167 0.27645 ## ReduceClash 0 1 0 / 9 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)A195 # TweakPsiSubtree removed gap before (T0547)L337 # TweakPsiSubtree removed gap before (T0547)V98 # TweakPsiSubtree removed gap before (T0547)I241 # TweakPsiSubtree removed gap before (T0547)L48 # TweakPsiSubtree removed gap before (T0547)K86 # Closed gap before (T0547)Y106 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)E125 # TweakPsiPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)K196 # TweakPsiSubtree removed gap before (T0547)G192 # TweakPhi removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)L85 # TweakPsiSubtree removed gap before (T0547)A114 # TweakPsiSubtree removed gap before (T0547)H527 # generation 6: best score out of 40: T0547.try1-opt2 222.94597 cost/residue, 1189 clashes 0.16157 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 1 / 6 = 0.16667 0.00920 ## JiggleSubtree 0 5 1 / 13 = 0.07692 0.00909 ## JiggleSegment 0 9 4 / 19 = 0.21053 0.02322 ## OptSubtree 0 1 0 / 11 = 0.00000 0.00000 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 2 8 3 / 11 = 0.27273 0.00248 ## TweakPhiSegment 0 10 7 / 16 = 0.43750 0.02674 ## TweakPsiSubtree 0 15 5 / 27 = 0.18519 0.26486 ## TweakPsiSegment 0 12 4 / 16 = 0.25000 0.00572 ## TweakPsiPhiSubtree 2 4 2 / 7 = 0.28571 0.01164 ## TweakPsiPhiSegment 0 3 1 / 3 = 0.33333 0.00035 ## TweakHbondSubtree 0 6 5 / 13 = 0.38462 0.08538 ## TweakHbondSegment 1 10 3 / 20 = 0.15000 0.01695 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## FixOmega 0 1 1 / 12 = 0.08333 0.00263 ## Backrub 4 11 3 / 12 = 0.25000 0.00300 ## BigBackrub 1 4 0 / 8 = 0.00000 0.00000 ## OneRotamer 0 31 12 / 60 = 0.20000 0.01828 ## ClashingRotamer 0 0 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 7 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 3 / 36 = 0.08333 0.30710 ## CloseGap 0 8 2 / 37 = 0.05405 0.30922 ## HealGap 0 6 2 / 30 = 0.06667 0.01451 ## MoveGap 0 2 0 / 8 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 20 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 10 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 23 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 14 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 59 = 0.01695 0.02509 ## CrossOver 1 1 1 / 10 = 0.10000 0.00266 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 1 / 30 = 0.03333 0.22116 ## ReduceClash 0 1 0 / 10 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)A147 # TweakPsiSubtree removed gap before (T0547)D564 # Closed gap before (T0547)Y106 # TweakPhi removed gap before (T0547)G198 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F318 # TweakPsiSubtree removed gap before (T0547)N132 # TweakPhi removed gap before (T0547)L351 # TweakPsiSubtree removed gap before (T0547)D316 # TweakPsiPhi removed gap before (T0547)E338 # TweakPsiSubtree removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)E470 # TweakPsiSubtree removed gap before (T0547)Y363 # TweakPsiPhi removed gap before (T0547)F444 # TweakPhi removed gap before (T0547)E308 # TweakPsiSubtree removed gap before (T0547)V184 # TweakPhi removed gap before (T0547)L48 # TweakPsiSubtree removed gap before (T0547)S539 # generation 7: best score out of 40: T0547.try1-opt2 222.80553 cost/residue, 1184 clashes 0.16158 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 1 / 6 = 0.16667 0.00920 ## JiggleSubtree 0 6 1 / 15 = 0.06667 0.00788 ## JiggleSegment 0 10 5 / 23 = 0.21739 0.02005 ## OptSubtree 0 1 0 / 11 = 0.00000 0.00000 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 3 10 3 / 13 = 0.23077 0.00210 ## TweakPhiSegment 0 12 8 / 19 = 0.42105 0.02313 ## TweakPsiSubtree 0 18 7 / 34 = 0.20588 0.21381 ## TweakPsiSegment 0 13 5 / 19 = 0.26316 0.00553 ## TweakPsiPhiSubtree 2 5 2 / 8 = 0.25000 0.01019 ## TweakPsiPhiSegment 0 5 3 / 5 = 0.60000 0.00110 ## TweakHbondSubtree 0 6 5 / 15 = 0.33333 0.07399 ## TweakHbondSegment 1 10 3 / 24 = 0.12500 0.01413 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 3 = 0.33333 0.00322 ## FixOmega 0 1 1 / 12 = 0.08333 0.00263 ## Backrub 4 12 4 / 14 = 0.28571 0.00399 ## BigBackrub 2 4 0 / 9 = 0.00000 0.00000 ## OneRotamer 0 37 17 / 71 = 0.23944 0.02437 ## ClashingRotamer 0 0 0 / 11 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 8 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 3 / 41 = 0.07317 0.26965 ## CloseGap 0 8 2 / 44 = 0.04545 0.26002 ## HealGap 0 6 2 / 31 = 0.06452 0.01405 ## MoveGap 0 2 0 / 9 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 21 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 10 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 26 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 17 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 68 = 0.01471 0.02177 ## CrossOver 1 2 2 / 11 = 0.18182 0.00586 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 1 0 1 / 34 = 0.02941 0.19514 ## ReduceClash 0 1 0 / 13 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)A268 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G19 # TweakPhi removed gap before (T0547)E285 # Closed gap before (T0547)L593 # TweakPsiSubtree removed gap before (T0547)D503 # TweakPsiPhi removed gap before (T0547)G273 # TweakPhi removed gap before (T0547)E162 # TweakPsiSubtree removed gap before (T0547)L224 # TweakPsiSubtree removed gap before (T0547)I212 # TweakPhi removed gap before (T0547)E376 # Closed gap before (T0547)I200 # TweakPhi removed gap before (T0547)K607 # TweakPsiSubtree removed gap before (T0547)L375 # TweakPhi removed gap before (T0547)R323 # generation 8: best score out of 40: T0547.try1-opt2 222.75562 cost/residue, 1167 clashes 0.16182 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 2 / 7 = 0.28571 0.00811 ## JiggleSubtree 0 8 2 / 18 = 0.11111 0.01121 ## JiggleSegment 0 10 5 / 24 = 0.20833 0.01922 ## OptSubtree 0 1 0 / 12 = 0.00000 0.00000 ## OptSegment 0 0 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 3 13 4 / 16 = 0.25000 0.01078 ## TweakPhiSegment 0 14 10 / 21 = 0.47619 0.02115 ## TweakPsiSubtree 0 21 8 / 37 = 0.21622 0.19667 ## TweakPsiSegment 0 15 6 / 21 = 0.28571 0.00678 ## TweakPsiPhiSubtree 3 7 2 / 10 = 0.20000 0.00815 ## TweakPsiPhiSegment 0 5 3 / 5 = 0.60000 0.00110 ## TweakHbondSubtree 0 7 6 / 17 = 0.35294 0.06565 ## TweakHbondSegment 1 13 5 / 28 = 0.17857 0.01622 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 4 = 0.25000 0.00241 ## FixOmega 1 1 1 / 12 = 0.08333 0.00263 ## Backrub 5 13 4 / 15 = 0.26667 0.00372 ## BigBackrub 2 4 0 / 11 = 0.00000 0.00000 ## OneRotamer 0 40 17 / 78 = 0.21795 0.02218 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 9 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 2 3 / 48 = 0.06250 0.23032 ## CloseGap 0 8 2 / 54 = 0.03704 0.21187 ## HealGap 0 6 2 / 35 = 0.05714 0.01244 ## MoveGap 0 2 0 / 10 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 22 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 29 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 19 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 78 = 0.01282 0.01898 ## CrossOver 1 2 2 / 13 = 0.15385 0.00496 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 1 0 1 / 42 = 0.02381 0.15797 ## ReduceClash 0 1 0 / 14 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)A569 # TweakPsiSubtree removed gap before (T0547)T531 # TweakPhi removed gap before (T0547)N355 # TweakPsiSubtree removed gap before (T0547)I412 # TweakPsiPhi removed gap before (T0547)A518 # TweakPsiSubtree removed gap before (T0547)F444 # TweakPsiSubtree removed gap before (T0547)L560 # TweakPhi removed gap before (T0547)S445 # TweakPsiSubtree removed gap before (T0547)R577 # TweakPsiPhi removed gap before (T0547)L97 # TweakPhi removed gap before (T0547)K543 # TweakPhi removed gap before (T0547)Y605 # TweakPsiSubtree removed gap before (T0547)H527 # TweakPsiSubtree removed gap before (T0547)H500 # TweakPhi removed gap before (T0547)S579 # TweakPsiPhi removed gap before (T0547)K582 # generation 9: best score out of 40: T0547.try1-opt2 222.71776 cost/residue, 1180 clashes 0.16136 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 2 / 8 = 0.25000 0.00710 ## JiggleSubtree 0 8 2 / 20 = 0.10000 0.01009 ## JiggleSegment 0 11 5 / 27 = 0.18519 0.01708 ## OptSubtree 0 1 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 17 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 22 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 21 = 0.00000 0.00000 ## TweakPhiSubtree 3 16 5 / 19 = 0.26316 0.00908 ## TweakPhiSegment 0 16 10 / 25 = 0.40000 0.01776 ## TweakPsiSubtree 0 26 10 / 44 = 0.22727 0.16825 ## TweakPsiSegment 0 15 6 / 21 = 0.28571 0.00678 ## TweakPsiPhiSubtree 4 9 3 / 12 = 0.25000 0.01249 ## TweakPsiPhiSegment 1 6 3 / 6 = 0.50000 0.00092 ## TweakHbondSubtree 0 9 6 / 24 = 0.25000 0.04651 ## TweakHbondSegment 1 14 6 / 30 = 0.20000 0.01700 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 5 = 0.20000 0.00193 ## FixOmega 1 1 1 / 12 = 0.08333 0.00263 ## Backrub 5 14 4 / 16 = 0.25000 0.00349 ## BigBackrub 2 6 1 / 13 = 0.07692 0.00406 ## OneRotamer 0 43 18 / 86 = 0.20930 0.02044 ## ClashingRotamer 0 0 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 11 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 3 3 / 52 = 0.05769 0.21261 ## CloseGap 0 8 2 / 57 = 0.03509 0.20072 ## HealGap 0 6 2 / 37 = 0.05405 0.01177 ## MoveGap 0 2 0 / 14 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 24 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 33 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 22 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 85 = 0.01176 0.01742 ## CrossOver 1 2 2 / 13 = 0.15385 0.00496 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 1 0 1 / 48 = 0.02083 0.13823 ## ReduceClash 0 1 0 / 16 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)K175 # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPsiSubtree removed gap before (T0547)F530 # TweakPsiSubtree removed gap before (T0547)K57 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L186 # TweakPsiPhi removed gap before (T0547)L332 # TweakPsiSubtree removed gap before (T0547)E546 # TweakPhi removed gap before (T0547)E285 # TweakPhi removed gap before (T0547)N13 # TweakPsiSubtree removed gap before (T0547)Q309 # TweakPsiPhi removed gap before (T0547)E535 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)D40 # Closed gap before (T0547)L593 # TweakPhi removed gap before (T0547)R50 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)V611 # TweakPhi removed gap before (T0547)N61 # TweakPsiPhi removed gap before (T0547)K414 # TweakPsiSubtree removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)H410 # TweakPsiPhi removed gap before (T0547)I551 # TweakPsiPhi removed gap before (T0547)L389 # TweakPsiSubtree removed gap before (T0547)K607 # TweakPsiSubtree removed gap before (T0547)R577 # TweakPsiSubtree removed gap before (T0547)H384 # generation 10: best score out of 40: T0547.try1-opt2 222.51088 cost/residue, 1153 clashes 0.16240 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 2 / 10 = 0.20000 0.00568 ## JiggleSubtree 0 8 2 / 20 = 0.10000 0.01009 ## JiggleSegment 0 12 6 / 29 = 0.20690 0.01605 ## OptSubtree 0 1 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 21 = 0.00000 0.00000 ## TweakPhiSubtree 3 18 6 / 21 = 0.28571 0.00836 ## TweakPhiSegment 0 18 12 / 29 = 0.41379 0.02175 ## TweakPsiSubtree 0 30 13 / 52 = 0.25000 0.14283 ## TweakPsiSegment 0 18 9 / 26 = 0.34615 0.01497 ## TweakPsiPhiSubtree 4 9 3 / 12 = 0.25000 0.01249 ## TweakPsiPhiSegment 3 9 3 / 12 = 0.25000 0.00046 ## TweakHbondSubtree 0 10 6 / 25 = 0.24000 0.04465 ## TweakHbondSegment 1 14 6 / 32 = 0.18750 0.01594 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 6 = 0.16667 0.00161 ## FixOmega 1 1 1 / 14 = 0.07143 0.00225 ## Backrub 7 15 4 / 18 = 0.22222 0.00310 ## BigBackrub 2 6 1 / 15 = 0.06667 0.00352 ## OneRotamer 0 46 18 / 94 = 0.19149 0.01870 ## ClashingRotamer 0 0 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 12 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 3 3 / 61 = 0.04918 0.18124 ## CloseGap 0 11 2 / 69 = 0.02899 0.16581 ## HealGap 0 6 2 / 40 = 0.05000 0.01089 ## MoveGap 0 2 0 / 16 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 27 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 38 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 22 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 92 = 0.01087 0.01609 ## CrossOver 1 2 2 / 13 = 0.15385 0.00496 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 1 0 1 / 52 = 0.01923 0.12759 ## ReduceClash 0 1 0 / 18 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)E172 # TweakPsiSubtree removed gap before (T0547)T228 # TweakPhi removed gap before (T0547)E308 # TweakPsiPhi removed gap before (T0547)I140 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I462 # TweakPsiPhi removed gap before (T0547)A121 # TweakPhi removed gap before (T0547)E346 # TweakPhi removed gap before (T0547)N289 # TweakPsiSubtree removed gap before (T0547)S579 # TweakPsiSubtree removed gap before (T0547)L497 # TweakPsiSubtree removed gap before (T0547)A189 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPsiSubtree removed gap before (T0547)I369 # TweakPsiPhi removed gap before (T0547)D452 # TweakPsiSubtree removed gap before (T0547)K589 # TweakPsiSubtree removed gap before (T0547)E37 # TweakPhi removed gap before (T0547)K423 # TweakPsiSubtree removed gap before (T0547)A121 # TweakPsiSubtree removed gap before (T0547)I350 # TweakPsiSubtree removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)D422 # TweakPhi removed gap before (T0547)D40 # TweakPhi removed gap before (T0547)G272 # TweakPhi removed gap before (T0547)I269 # generation 11: best score out of 40: T0547.try1-opt2 222.39320 cost/residue, 1153 clashes 0.16240 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 3 / 12 = 0.25000 0.00685 ## JiggleSubtree 0 8 2 / 22 = 0.09091 0.00917 ## JiggleSegment 0 12 6 / 31 = 0.19355 0.01502 ## OptSubtree 0 1 0 / 15 = 0.00000 0.00000 ## OptSegment 0 0 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 3 18 6 / 23 = 0.26087 0.00764 ## TweakPhiSegment 0 20 14 / 35 = 0.40000 0.01938 ## TweakPsiSubtree 0 35 17 / 61 = 0.27869 0.12412 ## TweakPsiSegment 0 19 9 / 30 = 0.30000 0.01298 ## TweakPsiPhiSubtree 5 11 5 / 14 = 0.35714 0.01238 ## TweakPsiPhiSegment 3 11 4 / 14 = 0.28571 0.00247 ## TweakHbondSubtree 0 13 9 / 29 = 0.31034 0.04305 ## TweakHbondSegment 1 14 6 / 33 = 0.18182 0.01546 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 1 / 9 = 0.11111 0.00107 ## FixOmega 1 1 1 / 14 = 0.07143 0.00225 ## Backrub 7 16 4 / 21 = 0.19048 0.00266 ## BigBackrub 3 7 2 / 19 = 0.10526 0.00897 ## OneRotamer 0 51 21 / 105 = 0.20000 0.01761 ## ClashingRotamer 0 0 0 / 17 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 13 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 3 3 / 66 = 0.04545 0.16751 ## CloseGap 0 11 2 / 76 = 0.02632 0.15054 ## HealGap 0 7 3 / 41 = 0.07317 0.01593 ## MoveGap 0 2 0 / 16 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 28 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 41 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 25 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 97 = 0.01031 0.01526 ## CrossOver 1 2 2 / 17 = 0.11765 0.00379 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 1 0 1 / 57 = 0.01754 0.11640 ## ReduceClash 0 1 0 / 20 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)N580 # TweakPsiPhi removed gap before (T0547)G544 # TweakPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)L116 # TweakPhi removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPsiSubtree removed gap before (T0547)A189 # TweakPsiPhi removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)N249 # TweakPhi removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)I417 # TweakPhi removed gap before (T0547)E361 # TweakPhi removed gap before (T0547)F14 # TweakPsiSubtree removed gap before (T0547)N105 # TweakPsiSubtree removed gap before (T0547)E257 # TweakPhi removed gap before (T0547)F73 # TweakPsiSubtree removed gap before (T0547)L38 # TweakPsiPhi removed gap before (T0547)Q424 # TweakPsiPhi removed gap before (T0547)Q58 # TweakPsiSubtree removed gap before (T0547)I551 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L224 # TweakPhi removed gap before (T0547)N11 # TweakPhi removed gap before (T0547)S236 # generation 12: best score out of 40: T0547.try1-opt2 221.30798 cost/residue, 1153 clashes 0.14947 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 3 / 12 = 0.25000 0.00685 ## JiggleSubtree 0 10 3 / 28 = 0.10714 0.01145 ## JiggleSegment 0 13 6 / 36 = 0.16667 0.01293 ## OptSubtree 0 1 0 / 18 = 0.00000 0.00000 ## OptSegment 0 1 1 / 20 = 0.05000 0.05426 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 3 21 7 / 27 = 0.25926 0.00710 ## TweakPhiSegment 0 22 15 / 40 = 0.37500 0.01710 ## TweakPsiSubtree 0 38 18 / 65 = 0.27692 0.11650 ## TweakPsiSegment 0 24 14 / 35 = 0.40000 0.02313 ## TweakPsiPhiSubtree 5 11 5 / 15 = 0.33333 0.01156 ## TweakPsiPhiSegment 3 11 5 / 18 = 0.27778 0.00205 ## TweakHbondSubtree 0 15 10 / 33 = 0.30303 0.03890 ## TweakHbondSegment 1 15 7 / 37 = 0.18919 0.01621 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 1 / 9 = 0.11111 0.00107 ## FixOmega 1 1 1 / 16 = 0.06250 0.00197 ## Backrub 7 17 4 / 23 = 0.17391 0.00243 ## BigBackrub 4 8 2 / 22 = 0.09091 0.00775 ## OneRotamer 0 53 21 / 112 = 0.18750 0.01651 ## ClashingRotamer 0 0 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 14 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 3 3 / 74 = 0.04054 0.14940 ## CloseGap 0 11 2 / 79 = 0.02532 0.14482 ## HealGap 0 8 4 / 42 = 0.09524 0.02129 ## MoveGap 0 2 0 / 21 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 29 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 42 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 25 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 103 = 0.00971 0.01437 ## CrossOver 1 2 2 / 18 = 0.11111 0.00358 ## DoubleCross 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 1 0 1 / 66 = 0.01515 0.10053 ## ReduceClash 0 1 0 / 20 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)G78 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPsiPhi removed gap before (T0547)Y440 # TweakPhi removed gap before (T0547)I241 # Healed gap before (T0547)Y43 residual break only 0.044 # TweakPsiSubtree removed gap before (T0547)P128 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPsiSubtree removed gap before (T0547)I241 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)N67 # TweakPsiSubtree removed gap before (T0547)F232 # TweakPsiPhi removed gap before (T0547)I142 # TweakPsiPhi removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)L560 # TweakPhi removed gap before (T0547)Q309 # TweakPhi removed gap before (T0547)T228 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N297 # TweakPsiSubtree removed gap before (T0547)N459 # generation 13: best score out of 40: T0547.try1-opt2 221.20435 cost/residue, 1151 clashes 0.14947 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 4 / 14 = 0.28571 0.00611 ## JiggleSubtree 0 12 3 / 32 = 0.09375 0.01002 ## JiggleSegment 0 13 6 / 36 = 0.16667 0.01293 ## OptSubtree 0 1 0 / 19 = 0.00000 0.00000 ## OptSegment 0 1 1 / 25 = 0.04000 0.04341 ## OptAllSegments 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 26 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 3 23 8 / 29 = 0.27586 0.00718 ## TweakPhiSegment 0 24 16 / 42 = 0.38095 0.01629 ## TweakPsiSubtree 0 40 18 / 69 = 0.26087 0.10975 ## TweakPsiSegment 0 26 16 / 41 = 0.39024 0.02076 ## TweakPsiPhiSubtree 5 14 7 / 18 = 0.38889 0.01605 ## TweakPsiPhiSegment 3 11 5 / 18 = 0.27778 0.00205 ## TweakHbondSubtree 0 17 11 / 37 = 0.29730 0.03483 ## TweakHbondSegment 1 17 7 / 39 = 0.17949 0.01538 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 2 / 12 = 0.16667 0.00082 ## FixOmega 1 1 1 / 18 = 0.05556 0.00175 ## Backrub 8 17 4 / 25 = 0.16000 0.00223 ## BigBackrub 5 8 2 / 22 = 0.09091 0.00775 ## OneRotamer 0 57 23 / 121 = 0.19008 0.01691 ## ClashingRotamer 0 0 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 14 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 80 = 0.05000 0.13882 ## CloseGap 0 11 2 / 81 = 0.02469 0.14125 ## HealGap 0 8 4 / 49 = 0.08163 0.01825 ## MoveGap 0 2 0 / 23 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 35 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 47 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 28 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 107 = 0.00935 0.01383 ## CrossOver 1 2 2 / 19 = 0.10526 0.00339 ## DoubleCross 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 1 0 1 / 66 = 0.01515 0.10053 ## ReduceClash 0 1 0 / 22 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)G198 # TweakPhi removed gap before (T0547)I142 # TweakPsiPhi removed gap before (T0547)K414 # TweakPsiSubtree removed gap before (T0547)T154 # TweakPhi removed gap before (T0547)A536 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A268 # TweakPsiPhi removed gap before (T0547)L139 # TweakPhi removed gap before (T0547)V82 # TweakPhi removed gap before (T0547)N123 # TweakPhi removed gap before (T0547)K177 # TweakPsiSubtree removed gap before (T0547)N24 # TweakPsiPhi removed gap before (T0547)A330 # TweakPsiSubtree removed gap before (T0547)S475 # TweakPhi removed gap before (T0547)A127 # TweakPhi removed gap before (T0547)Q424 # TweakPsiSubtree removed gap before (T0547)M525 # TweakPsiPhi removed gap before (T0547)H231 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPsiSubtree removed gap before (T0547)Y295 # TweakPsiSubtree removed gap before (T0547)G19 # TweakPsiSubtree removed gap before (T0547)Q56 # TweakPhi removed gap before (T0547)L224 # generation 14: best score out of 40: T0547.try1-opt2 220.87111 cost/residue, 1139 clashes 0.14947 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 4 / 15 = 0.26667 0.00570 ## JiggleSubtree 0 13 4 / 34 = 0.11765 0.01252 ## JiggleSegment 0 14 6 / 39 = 0.15385 0.01194 ## OptSubtree 0 1 0 / 19 = 0.00000 0.00000 ## OptSegment 0 1 1 / 28 = 0.03571 0.03876 ## OptAllSegments 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 28 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 3 24 9 / 34 = 0.26471 0.00634 ## TweakPhiSegment 0 24 17 / 46 = 0.36957 0.01524 ## TweakPsiSubtree 0 44 20 / 73 = 0.27397 0.10541 ## TweakPsiSegment 0 31 16 / 46 = 0.34783 0.01850 ## TweakPsiPhiSubtree 5 17 8 / 23 = 0.34783 0.01280 ## TweakPsiPhiSegment 3 11 6 / 19 = 0.31579 0.00255 ## TweakHbondSubtree 0 18 12 / 40 = 0.30000 0.03226 ## TweakHbondSegment 1 21 8 / 45 = 0.17778 0.01810 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 2 / 12 = 0.16667 0.00082 ## FixOmega 1 1 1 / 20 = 0.05000 0.00158 ## Backrub 9 17 5 / 26 = 0.19231 0.00245 ## BigBackrub 6 9 2 / 24 = 0.08333 0.00710 ## OneRotamer 0 60 24 / 127 = 0.18898 0.01874 ## ClashingRotamer 0 0 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 16 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 89 = 0.04494 0.12479 ## CloseGap 0 13 2 / 90 = 0.02222 0.12712 ## HealGap 0 12 4 / 55 = 0.07273 0.01626 ## MoveGap 0 2 0 / 24 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 36 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 47 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 29 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 118 = 0.00847 0.01254 ## CrossOver 1 2 2 / 19 = 0.10526 0.00339 ## DoubleCross 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 1 0 1 / 71 = 0.01408 0.09345 ## ReduceClash 0 1 0 / 22 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A147 # TweakPsiSubtree removed gap before (T0547)M229 # TweakPsiSubtree removed gap before (T0547)Y75 # TweakPhi removed gap before (T0547)A374 # TweakPsiPhi removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)N201 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)A189 # TweakPhi removed gap before (T0547)I388 # TweakPsiPhi removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)P472 # TweakPsiSubtree removed gap before (T0547)L394 # TweakPhi removed gap before (T0547)A170 # TweakPsiPhi removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)L420 # TweakPsiPhi removed gap before (T0547)G74 # TweakPsiSubtree removed gap before (T0547)Q342 # TweakPsiSubtree removed gap before (T0547)A146 # TweakPsiSubtree removed gap before (T0547)K357 # TweakPhi removed gap before (T0547)L465 # TweakPhi removed gap before (T0547)R288 # TweakPsiPhi removed gap before (T0547)G19 # generation 15: best score out of 40: T0547.try1-opt2 220.86182 cost/residue, 1139 clashes 0.14947 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 4 / 16 = 0.25000 0.00534 ## JiggleSubtree 0 13 4 / 38 = 0.10526 0.01120 ## JiggleSegment 0 14 6 / 40 = 0.15000 0.01164 ## OptSubtree 0 1 0 / 19 = 0.00000 0.00000 ## OptSegment 0 1 1 / 32 = 0.03125 0.03391 ## OptAllSegments 0 0 0 / 22 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 31 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 25 = 0.00000 0.00000 ## TweakPhiSubtree 3 24 9 / 35 = 0.25714 0.00616 ## TweakPhiSegment 0 26 18 / 51 = 0.35294 0.01375 ## TweakPsiSubtree 0 48 22 / 82 = 0.26829 0.09406 ## TweakPsiSegment 0 33 16 / 49 = 0.32653 0.01737 ## TweakPsiPhiSubtree 5 19 8 / 25 = 0.32000 0.01177 ## TweakPsiPhiSegment 3 14 6 / 22 = 0.27273 0.00220 ## TweakHbondSubtree 0 18 12 / 41 = 0.29268 0.03147 ## TweakHbondSegment 1 22 10 / 50 = 0.20000 0.01651 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 2 / 12 = 0.16667 0.00082 ## FixOmega 1 1 1 / 21 = 0.04762 0.00150 ## Backrub 10 19 6 / 28 = 0.21429 0.00260 ## BigBackrub 7 11 3 / 27 = 0.11111 0.00823 ## OneRotamer 0 64 25 / 135 = 0.18519 0.01770 ## ClashingRotamer 0 0 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 16 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 99 = 0.04040 0.11218 ## CloseGap 0 14 3 / 94 = 0.03191 0.12480 ## HealGap 0 13 4 / 60 = 0.06667 0.01490 ## MoveGap 0 2 0 / 26 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 36 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 50 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 33 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 124 = 0.00806 0.01194 ## CrossOver 1 2 2 / 20 = 0.10000 0.00322 ## DoubleCross 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 2 0 1 / 75 = 0.01333 0.08847 ## ReduceClash 0 1 0 / 23 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)K71 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPhi removed gap before (T0547)V94 # TweakPhi removed gap before (T0547)F134 # TweakPsiPhi removed gap before (T0547)G524 # TweakPsiPhi removed gap before (T0547)N141 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)E60 # TweakPsiSubtree removed gap before (T0547)N65 # TweakPsiSubtree removed gap before (T0547)N132 # TweakPhi removed gap before (T0547)S579 # TweakPsiSubtree removed gap before (T0547)F232 # TweakPsiSubtree removed gap before (T0547)H527 # generation 16: best score out of 40: T0547.try1-opt2 220.76477 cost/residue, 1139 clashes 0.14982 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 4 / 16 = 0.25000 0.00534 ## JiggleSubtree 0 14 4 / 43 = 0.09302 0.00990 ## JiggleSegment 1 14 6 / 42 = 0.14286 0.01108 ## OptSubtree 0 1 0 / 21 = 0.00000 0.00000 ## OptSegment 0 2 2 / 42 = 0.04762 0.03668 ## OptAllSegments 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 33 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 27 = 0.00000 0.00000 ## TweakPhiSubtree 3 26 11 / 37 = 0.29730 0.00727 ## TweakPhiSegment 0 27 18 / 53 = 0.33962 0.01323 ## TweakPsiSubtree 0 49 24 / 85 = 0.28235 0.09132 ## TweakPsiSegment 0 38 20 / 55 = 0.36364 0.01709 ## TweakPsiPhiSubtree 5 19 8 / 25 = 0.32000 0.01177 ## TweakPsiPhiSegment 3 15 6 / 24 = 0.25000 0.00202 ## TweakHbondSubtree 1 21 12 / 44 = 0.27273 0.02932 ## TweakHbondSegment 2 24 12 / 53 = 0.22642 0.01768 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 2 / 12 = 0.16667 0.00082 ## FixOmega 1 1 1 / 22 = 0.04545 0.00143 ## Backrub 10 21 6 / 30 = 0.20000 0.00243 ## BigBackrub 7 12 4 / 30 = 0.13333 0.00752 ## OneRotamer 0 66 25 / 142 = 0.17606 0.01683 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 18 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 105 = 0.03810 0.10577 ## CloseGap 0 14 3 / 98 = 0.03061 0.11970 ## HealGap 0 14 4 / 65 = 0.06154 0.01376 ## MoveGap 0 2 0 / 28 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 42 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 0 / 55 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 33 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 128 = 0.00781 0.01156 ## CrossOver 1 2 2 / 21 = 0.09524 0.00307 ## DoubleCross 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 3 0 1 / 78 = 0.01282 0.08506 ## ReduceClash 0 1 0 / 24 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F232 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L456 # TweakPsiSubtree removed gap before (T0547)K310 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPsiSubtree removed gap before (T0547)D501 # TweakPsiPhi removed gap before (T0547)F134 # TweakPsiSubtree removed gap before (T0547)N65 # TweakPsiSubtree removed gap before (T0547)S403 # TweakPhi removed gap before (T0547)H591 # TweakPsiSubtree removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)V35 # TweakPsiSubtree removed gap before (T0547)K260 # TweakPsiPhi removed gap before (T0547)S403 # TweakPhi removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)N105 # TweakPsiSubtree removed gap before (T0547)G262 # TweakPsiSubtree removed gap before (T0547)G45 # TweakPhi removed gap before (T0547)E278 # TweakPhi removed gap before (T0547)D494 # TweakPsiPhi removed gap before (T0547)V87 # TweakPsiPhi removed gap before (T0547)I16 # generation 17: best score out of 40: T0547.try1-opt2 220.70143 cost/residue, 1139 clashes 0.14877 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 4 / 17 = 0.23529 0.00503 ## JiggleSubtree 0 15 4 / 47 = 0.08511 0.00906 ## JiggleSegment 1 15 6 / 44 = 0.13636 0.01058 ## OptSubtree 0 1 0 / 24 = 0.00000 0.00000 ## OptSegment 0 2 2 / 49 = 0.04082 0.03144 ## OptAllSegments 0 0 0 / 27 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 36 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 29 = 0.00000 0.00000 ## TweakPhiSubtree 3 26 11 / 37 = 0.29730 0.00727 ## TweakPhiSegment 0 30 19 / 58 = 0.32759 0.01210 ## TweakPsiSubtree 0 52 28 / 94 = 0.29787 0.08485 ## TweakPsiSegment 0 41 23 / 61 = 0.37705 0.01641 ## TweakPsiPhiSubtree 5 21 8 / 27 = 0.29630 0.01090 ## TweakPsiPhiSegment 4 18 7 / 28 = 0.25000 0.00212 ## TweakHbondSubtree 1 23 12 / 47 = 0.25532 0.02745 ## TweakHbondSegment 2 25 12 / 58 = 0.20690 0.01615 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 2 / 12 = 0.16667 0.00082 ## FixOmega 1 1 1 / 22 = 0.04545 0.00143 ## Backrub 10 22 7 / 31 = 0.22581 0.00251 ## BigBackrub 9 12 4 / 30 = 0.13333 0.00752 ## OneRotamer 0 68 25 / 147 = 0.17007 0.01626 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 18 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 111 = 0.03604 0.10005 ## CloseGap 0 15 3 / 103 = 0.02913 0.11389 ## HealGap 0 14 4 / 67 = 0.05970 0.01335 ## MoveGap 0 2 0 / 28 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 47 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 0 / 56 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 35 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 133 = 0.00752 0.01113 ## CrossOver 1 3 2 / 23 = 0.08696 0.00280 ## DoubleCross 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 3 0 1 / 85 = 0.01176 0.07806 ## ReduceClash 0 1 0 / 24 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)N201 # TweakPsiSubtree removed gap before (T0547)D364 # TweakPsiSubtree removed gap before (T0547)N373 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)V277 # TweakPsiPhi removed gap before (T0547)I31 # TweakPhi removed gap before (T0547)E320 # TweakPhi removed gap before (T0547)I142 # TweakPsiSubtree removed gap before (T0547)V611 # TweakPsiSubtree removed gap before (T0547)L182 # TweakPsiPhi removed gap before (T0547)G455 # TweakPsiSubtree removed gap before (T0547)G64 # TweakPhi removed gap before (T0547)S579 # TweakPhi removed gap before (T0547)I570 # TweakPhi removed gap before (T0547)A251 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A121 # generation 18: best score out of 40: T0547.try1-opt2 220.60229 cost/residue, 1143 clashes 0.14264 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 4 / 17 = 0.23529 0.00503 ## JiggleSubtree 0 15 4 / 51 = 0.07843 0.00835 ## JiggleSegment 1 16 6 / 49 = 0.12245 0.00950 ## OptSubtree 0 1 0 / 25 = 0.00000 0.00000 ## OptSegment 0 2 2 / 57 = 0.03509 0.02703 ## OptAllSegments 0 0 0 / 28 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 36 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 29 = 0.00000 0.00000 ## TweakPhiSubtree 3 29 12 / 41 = 0.29268 0.00862 ## TweakPhiSegment 0 30 19 / 60 = 0.31667 0.01170 ## TweakPsiSubtree 0 55 29 / 98 = 0.29592 0.08138 ## TweakPsiSegment 0 44 25 / 65 = 0.38462 0.01571 ## TweakPsiPhiSubtree 5 23 10 / 29 = 0.34483 0.01079 ## TweakPsiPhiSegment 4 18 7 / 28 = 0.25000 0.00212 ## TweakHbondSubtree 1 25 12 / 49 = 0.24490 0.02633 ## TweakHbondSegment 2 28 12 / 63 = 0.19048 0.01487 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 2 / 12 = 0.16667 0.00082 ## FixOmega 1 1 1 / 24 = 0.04167 0.00131 ## Backrub 11 23 8 / 32 = 0.25000 0.00250 ## BigBackrub 10 13 4 / 32 = 0.12500 0.00705 ## OneRotamer 0 72 25 / 155 = 0.16129 0.01542 ## ClashingRotamer 0 0 0 / 22 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 20 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 117 = 0.03419 0.09492 ## CloseGap 0 15 3 / 110 = 0.02727 0.10664 ## HealGap 0 15 5 / 71 = 0.07042 0.01599 ## MoveGap 0 2 0 / 28 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 50 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 0 / 58 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 35 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 142 = 0.00704 0.01042 ## CrossOver 1 3 2 / 25 = 0.08000 0.00258 ## DoubleCross 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 3 0 1 / 93 = 0.01075 0.07134 ## ReduceClash 0 1 0 / 24 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)I369 # TweakPsiPhi removed gap before (T0547)I32 # TweakPsiSubtree removed gap before (T0547)R467 # TweakPhi removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)K76 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)E361 # TweakPhi removed gap before (T0547)I145 # TweakPhi removed gap before (T0547)G92 # TweakPsiSubtree removed gap before (T0547)T534 # TweakPsiSubtree removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)T531 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPsiSubtree removed gap before (T0547)N580 # TweakPsiPhi removed gap before (T0547)L303 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Y83 # TweakPhi removed gap before (T0547)A114 # TweakPsiPhi removed gap before (T0547)L163 # TweakPsiPhi removed gap before (T0547)N459 # generation 19: best score out of 40: T0547.try1-opt2 220.55118 cost/residue, 1141 clashes 0.14268 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 4 / 18 = 0.22222 0.00475 ## JiggleSubtree 0 15 4 / 53 = 0.07547 0.00803 ## JiggleSegment 1 18 6 / 51 = 0.11765 0.00913 ## OptSubtree 0 1 0 / 28 = 0.00000 0.00000 ## OptSegment 0 2 2 / 62 = 0.03226 0.02485 ## OptAllSegments 0 0 0 / 29 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 36 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 31 = 0.00000 0.00000 ## TweakPhiSubtree 3 31 13 / 44 = 0.29545 0.00841 ## TweakPhiSegment 1 33 20 / 63 = 0.31746 0.01188 ## TweakPsiSubtree 0 56 30 / 101 = 0.29703 0.07926 ## TweakPsiSegment 0 49 27 / 71 = 0.38028 0.01570 ## TweakPsiPhiSubtree 6 24 10 / 30 = 0.33333 0.01043 ## TweakPsiPhiSegment 4 21 9 / 31 = 0.29032 0.00383 ## TweakHbondSubtree 1 26 12 / 52 = 0.23077 0.02481 ## TweakHbondSegment 2 28 12 / 65 = 0.18462 0.01441 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 2 / 12 = 0.16667 0.00082 ## FixOmega 1 1 1 / 25 = 0.04000 0.00126 ## Backrub 13 24 8 / 33 = 0.24242 0.00243 ## BigBackrub 10 13 4 / 34 = 0.11765 0.00663 ## OneRotamer 0 76 27 / 166 = 0.16265 0.01453 ## ClashingRotamer 0 0 0 / 26 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 20 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 126 = 0.03175 0.08814 ## CloseGap 0 15 3 / 116 = 0.02586 0.10113 ## HealGap 0 15 5 / 71 = 0.07042 0.01599 ## MoveGap 0 2 0 / 29 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 50 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 0 / 59 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 38 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 151 = 0.00662 0.00980 ## CrossOver 1 3 2 / 26 = 0.07692 0.00248 ## DoubleCross 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 3 0 1 / 101 = 0.00990 0.06569 ## ReduceClash 0 1 0 / 25 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)T390 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)Y255 # TweakPsiSubtree removed gap before (T0547)L332 # TweakPsiSubtree removed gap before (T0547)Y104 # TweakPsiSubtree removed gap before (T0547)E285 # TweakPsiSubtree removed gap before (T0547)T154 # TweakPhi removed gap before (T0547)G181 # TweakPhi removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)G64 # TweakPsiSubtree removed gap before (T0547)F530 # TweakPsiSubtree removed gap before (T0547)E225 # TweakPsiSubtree removed gap before (T0547)G159 # TweakPsiSubtree removed gap before (T0547)I169 # TweakPsiSubtree removed gap before (T0547)F144 # TweakPsiSubtree removed gap before (T0547)E552 # TweakPsiPhi removed gap before (T0547)K304 # generation 20: best score out of 40: T0547.try1-opt2 220.45892 cost/residue, 1142 clashes 0.14271 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 4 / 18 = 0.22222 0.00475 ## JiggleSubtree 0 16 4 / 58 = 0.06897 0.00734 ## JiggleSegment 1 19 6 / 52 = 0.11538 0.00895 ## OptSubtree 0 1 0 / 30 = 0.00000 0.00000 ## OptSegment 0 2 2 / 71 = 0.02817 0.02170 ## OptAllSegments 0 0 0 / 30 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 36 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 36 = 0.00000 0.00000 ## TweakPhiSubtree 4 32 13 / 45 = 0.28889 0.00822 ## TweakPhiSegment 1 35 21 / 67 = 0.31343 0.01157 ## TweakPsiSubtree 0 62 34 / 108 = 0.31481 0.07524 ## TweakPsiSegment 0 51 29 / 77 = 0.37662 0.01617 ## TweakPsiPhiSubtree 6 24 10 / 30 = 0.33333 0.01043 ## TweakPsiPhiSegment 5 23 11 / 33 = 0.33333 0.00380 ## TweakHbondSubtree 1 28 12 / 55 = 0.21818 0.02346 ## TweakHbondSegment 2 29 13 / 66 = 0.19697 0.01512 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 2 / 12 = 0.16667 0.00082 ## FixOmega 1 1 1 / 26 = 0.03846 0.00121 ## Backrub 13 24 8 / 33 = 0.24242 0.00243 ## BigBackrub 10 13 4 / 35 = 0.11429 0.00644 ## OneRotamer 0 79 28 / 177 = 0.15819 0.01372 ## ClashingRotamer 0 0 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 22 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 130 = 0.03077 0.08543 ## CloseGap 0 17 4 / 126 = 0.03175 0.09553 ## HealGap 0 15 5 / 75 = 0.06667 0.01513 ## MoveGap 0 2 0 / 29 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 51 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 0 / 60 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 38 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 158 = 0.00633 0.00937 ## CrossOver 1 3 2 / 29 = 0.06897 0.00222 ## DoubleCross 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 3 1 1 / 107 = 0.00935 0.06201 ## ReduceClash 0 1 0 / 25 = 0.00000 0.00000 # Healed gap before (T0547)Y43 residual break only 0.044 # TweakPsiSubtree removed gap before (T0547)A165 # Healed gap before (T0547)Y43 residual break only 0.044 # TweakPsiSubtree removed gap before (T0547)I537 # TweakPsiPhi removed gap before (T0547)L186 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPsiSubtree removed gap before (T0547)G594 # TweakPhi removed gap before (T0547)C22 # TweakPhi removed gap before (T0547)L54 # TweakPhi removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)I269 # Healed gap before (T0547)Y43 residual break only 0.044 # TweakPsiSubtree removed gap before (T0547)G455 # TweakPsiSubtree removed gap before (T0547)V184 # TweakPsiSubtree removed gap before (T0547)A247 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)G181 # TweakPhi removed gap before (T0547)Y122 # TweakPsiPhi removed gap before (T0547)L600 # TweakPhi removed gap before (T0547)V325 # TweakPhi removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)N528 # TweakPsiPhi removed gap before (T0547)A569 # generation 21: best score out of 40: T0547.try1-opt2 220.02368 cost/residue, 1133 clashes 0.14224 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 4 / 19 = 0.21053 0.00450 ## JiggleSubtree 0 16 4 / 61 = 0.06557 0.00698 ## JiggleSegment 1 19 6 / 53 = 0.11321 0.00878 ## OptSubtree 0 1 0 / 33 = 0.00000 0.00000 ## OptSegment 0 2 2 / 77 = 0.02597 0.02001 ## OptAllSegments 0 0 0 / 31 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 36 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 37 = 0.00000 0.00000 ## TweakPhiSubtree 4 33 14 / 48 = 0.29167 0.00799 ## TweakPhiSegment 1 37 22 / 71 = 0.30986 0.01250 ## TweakPsiSubtree 0 69 36 / 117 = 0.30769 0.06962 ## TweakPsiSegment 0 54 30 / 80 = 0.37500 0.02203 ## TweakPsiPhiSubtree 9 24 10 / 32 = 0.31250 0.00978 ## TweakPsiPhiSegment 5 23 12 / 34 = 0.35294 0.00418 ## TweakHbondSubtree 1 31 13 / 58 = 0.22414 0.02300 ## TweakHbondSegment 2 33 14 / 70 = 0.20000 0.01490 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 2 / 12 = 0.16667 0.00082 ## FixOmega 1 1 1 / 28 = 0.03571 0.00113 ## Backrub 13 25 8 / 36 = 0.22222 0.00222 ## BigBackrub 11 13 4 / 35 = 0.11429 0.00644 ## OneRotamer 0 79 28 / 181 = 0.15470 0.01342 ## ClashingRotamer 0 0 0 / 29 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 22 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 141 = 0.02837 0.07877 ## CloseGap 0 19 4 / 135 = 0.02963 0.08916 ## HealGap 0 15 5 / 84 = 0.05952 0.01351 ## MoveGap 0 2 0 / 31 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 54 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 63 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 39 = 0.02564 0.01624 ## TwoFragment 0 0 1 / 161 = 0.00621 0.00919 ## CrossOver 1 3 2 / 30 = 0.06667 0.00215 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 3 2 2 / 109 = 0.01835 0.06298 ## ReduceClash 0 1 0 / 25 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)G235 # TweakPsiPhi removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)D480 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)I317 # TweakPsiSubtree removed gap before (T0547)A121 # TweakPsiSubtree removed gap before (T0547)N355 # TweakPhi removed gap before (T0547)I238 # TweakPsiSubtree removed gap before (T0547)L420 # TweakPsiSubtree removed gap before (T0547)F134 # TweakPsiPhi removed gap before (T0547)D33 # TweakPsiPhi removed gap before (T0547)L563 # TweakPsiSubtree removed gap before (T0547)P46 # TweakPhi removed gap before (T0547)I180 # TweakPsiSubtree removed gap before (T0547)H568 # TweakPsiSubtree removed gap before (T0547)Q520 # TweakPhi removed gap before (T0547)L248 # TweakPsiPhi removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)S112 # TweakPsiSubtree removed gap before (T0547)Y396 # TweakPsiSubtree removed gap before (T0547)M463 # generation 22: best score out of 40: T0547.try1-opt2 219.98390 cost/residue, 1155 clashes 0.14863 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 4 / 20 = 0.20000 0.00428 ## JiggleSubtree 0 16 4 / 63 = 0.06349 0.00676 ## JiggleSegment 1 19 6 / 54 = 0.11111 0.00862 ## OptSubtree 0 1 0 / 34 = 0.00000 0.00000 ## OptSegment 0 2 2 / 81 = 0.02469 0.01902 ## OptAllSegments 0 0 0 / 31 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 38 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 39 = 0.00000 0.00000 ## TweakPhiSubtree 4 34 14 / 49 = 0.28571 0.00783 ## TweakPhiSegment 1 41 23 / 77 = 0.29870 0.01156 ## TweakPsiSubtree 0 75 41 / 128 = 0.32031 0.06531 ## TweakPsiSegment 1 54 30 / 83 = 0.36145 0.02123 ## TweakPsiPhiSubtree 10 27 12 / 35 = 0.34286 0.01033 ## TweakPsiPhiSegment 6 23 12 / 35 = 0.34286 0.00406 ## TweakHbondSubtree 1 33 14 / 61 = 0.22951 0.02242 ## TweakHbondSegment 2 37 16 / 79 = 0.20253 0.01367 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 2 / 12 = 0.16667 0.00082 ## FixOmega 1 1 1 / 29 = 0.03448 0.00109 ## Backrub 13 27 10 / 38 = 0.26316 0.00426 ## BigBackrub 11 13 4 / 37 = 0.10811 0.00609 ## OneRotamer 0 80 29 / 184 = 0.15761 0.01332 ## ClashingRotamer 0 0 0 / 31 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 22 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 148 = 0.02703 0.07504 ## CloseGap 0 20 4 / 141 = 0.02837 0.08537 ## HealGap 0 15 5 / 86 = 0.05814 0.01320 ## MoveGap 0 2 0 / 32 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 55 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 67 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 49 = 0.02041 0.01293 ## TwoFragment 0 0 1 / 165 = 0.00606 0.00897 ## CrossOver 1 3 2 / 30 = 0.06667 0.00215 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 3 2 2 / 111 = 0.01802 0.06184 ## ReduceClash 0 1 0 / 26 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)Y90 # TweakPhi removed gap before (T0547)R70 # TweakPhi removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)I212 # TweakPsiSubtree removed gap before (T0547)L97 # TweakPsiPhi removed gap before (T0547)I551 # TweakPsiSubtree removed gap before (T0547)L337 # TweakPsiPhi removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)Q520 # TweakPsiSubtree removed gap before (T0547)S287 # TweakPsiPhi removed gap before (T0547)G322 # TweakPsiPhi removed gap before (T0547)T256 # TweakPsiSubtree removed gap before (T0547)R185 # TweakPhi removed gap before (T0547)A276 # TweakPhi removed gap before (T0547)N152 # TweakPsiPhi removed gap before (T0547)L160 # TweakPhi removed gap before (T0547)N105 # TweakPsiPhi removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)L420 # TweakPhi removed gap before (T0547)G235 # TweakPsiPhi removed gap before (T0547)L85 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPsiPhi removed gap before (T0547)Y83 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPsiSubtree removed gap before (T0547)K95 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N141 # generation 23: best score out of 40: T0547.try1-opt2 219.74294 cost/residue, 1159 clashes 0.14192 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 5 / 22 = 0.22727 0.00395 ## JiggleSubtree 0 16 4 / 67 = 0.05970 0.00635 ## JiggleSegment 1 19 6 / 54 = 0.11111 0.00862 ## OptSubtree 0 1 0 / 34 = 0.00000 0.00000 ## OptSegment 0 2 2 / 81 = 0.02469 0.01902 ## OptAllSegments 0 0 0 / 31 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 38 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 41 = 0.00000 0.00000 ## TweakPhiSubtree 5 36 17 / 53 = 0.32075 0.00905 ## TweakPhiSegment 1 43 24 / 81 = 0.29630 0.01143 ## TweakPsiSubtree 0 78 41 / 134 = 0.30597 0.06239 ## TweakPsiSegment 1 58 32 / 89 = 0.35955 0.02174 ## TweakPsiPhiSubtree 11 34 16 / 43 = 0.37209 0.01090 ## TweakPsiPhiSegment 6 24 12 / 37 = 0.32432 0.00385 ## TweakHbondSubtree 1 35 14 / 65 = 0.21538 0.02104 ## TweakHbondSegment 2 38 16 / 82 = 0.19512 0.01317 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 2 / 12 = 0.16667 0.00082 ## FixOmega 1 1 1 / 31 = 0.03226 0.00102 ## Backrub 14 29 11 / 41 = 0.26829 0.00403 ## BigBackrub 11 13 4 / 38 = 0.10526 0.00593 ## OneRotamer 0 81 29 / 189 = 0.15344 0.01297 ## ClashingRotamer 0 0 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 23 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 157 = 0.02548 0.07074 ## CloseGap 0 20 4 / 144 = 0.02778 0.08359 ## HealGap 0 17 7 / 95 = 0.07368 0.01702 ## MoveGap 0 2 0 / 34 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 59 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 67 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 52 = 0.01923 0.01218 ## TwoFragment 0 0 1 / 170 = 0.00588 0.00871 ## CrossOver 1 3 2 / 31 = 0.06452 0.00208 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 114 = 0.01754 0.06021 ## ReduceClash 0 1 0 / 26 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)L349 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPsiPhi removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)T209 # TweakPsiSubtree removed gap before (T0547)T473 # TweakPsiSubtree removed gap before (T0547)P533 # TweakPsiSubtree removed gap before (T0547)T413 # TweakPsiPhi removed gap before (T0547)K76 # TweakPhi removed gap before (T0547)K68 # TweakPhi removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)D602 # TweakPhi removed gap before (T0547)L223 # TweakPsiSubtree removed gap before (T0547)I302 # TweakPsiPhi removed gap before (T0547)A431 # TweakPhi removed gap before (T0547)L389 # TweakPhi removed gap before (T0547)Y290 # TweakPhi removed gap before (T0547)S581 # TweakPhi removed gap before (T0547)G150 # TweakPsiPhi removed gap before (T0547)L248 # TweakPhi removed gap before (T0547)G42 # TweakPsiSubtree removed gap before (T0547)N24 # TweakPsiPhi removed gap before (T0547)F282 # TweakPsiPhi removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)A416 # TweakPhi removed gap before (T0547)N603 # TweakPsiPhi removed gap before (T0547)I369 # TweakPsiPhi removed gap before (T0547)A518 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N297 # TweakPsiPhi removed gap before (T0547)R70 # TweakPsiSubtree removed gap before (T0547)K196 # generation 24: best score out of 40: T0547.try1-opt2 219.74101 cost/residue, 1159 clashes 0.14192 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 5 / 24 = 0.20833 0.00362 ## JiggleSubtree 0 16 4 / 68 = 0.05882 0.00626 ## JiggleSegment 1 19 6 / 54 = 0.11111 0.00862 ## OptSubtree 0 1 0 / 36 = 0.00000 0.00000 ## OptSegment 0 2 2 / 82 = 0.02439 0.01879 ## OptAllSegments 0 0 0 / 32 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 38 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 42 = 0.00000 0.00000 ## TweakPhiSubtree 6 39 21 / 57 = 0.36842 0.00903 ## TweakPhiSegment 1 49 29 / 88 = 0.32955 0.01390 ## TweakPsiSubtree 0 79 42 / 138 = 0.30435 0.06141 ## TweakPsiSegment 1 61 33 / 96 = 0.34375 0.02109 ## TweakPsiPhiSubtree 12 38 16 / 50 = 0.32000 0.00937 ## TweakPsiPhiSegment 7 26 13 / 40 = 0.32500 0.00370 ## TweakHbondSubtree 1 39 16 / 69 = 0.23188 0.02120 ## TweakHbondSegment 2 38 16 / 83 = 0.19277 0.01301 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 2 / 13 = 0.15385 0.00076 ## FixOmega 1 1 1 / 33 = 0.03030 0.00096 ## Backrub 14 32 12 / 46 = 0.26087 0.00368 ## BigBackrub 12 13 5 / 40 = 0.12500 0.00564 ## OneRotamer 0 83 29 / 193 = 0.15026 0.01270 ## ClashingRotamer 0 0 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 23 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 161 = 0.02484 0.06898 ## CloseGap 0 21 4 / 152 = 0.02632 0.07919 ## HealGap 0 17 7 / 98 = 0.07143 0.01650 ## MoveGap 0 2 0 / 37 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 59 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 68 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 58 = 0.01724 0.01092 ## TwoFragment 0 0 1 / 177 = 0.00565 0.00836 ## CrossOver 1 3 2 / 33 = 0.06061 0.00195 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 119 = 0.01681 0.05768 ## ReduceClash 0 1 0 / 27 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)N528 # TweakPhi removed gap before (T0547)E561 # TweakPsiSubtree removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)L583 # TweakPsiSubtree removed gap before (T0547)I59 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I169 # TweakPsiSubtree removed gap before (T0547)A247 # TweakPsiSubtree removed gap before (T0547)L244 # TweakPsiSubtree removed gap before (T0547)N123 # TweakPsiPhi removed gap before (T0547)Y63 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPsiPhi removed gap before (T0547)F453 # TweakPsiPhi removed gap before (T0547)V336 # TweakPhi removed gap before (T0547)L139 # TweakPhi removed gap before (T0547)T413 # TweakPsiSubtree removed gap before (T0547)N603 # TweakPsiSubtree removed gap before (T0547)A30 # TweakPhi removed gap before (T0547)S581 # TweakPsiSubtree removed gap before (T0547)S403 # TweakPsiPhi removed gap before (T0547)L456 # TweakPsiSubtree removed gap before (T0547)E507 # TweakPhi removed gap before (T0547)N355 # TweakPsiSubtree removed gap before (T0547)I302 # TweakPhi removed gap before (T0547)L206 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G78 # TweakPsiPhi removed gap before (T0547)V98 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)N61 # TweakPsiSubtree removed gap before (T0547)R173 # TweakPhi removed gap before (T0547)G192 # TweakPsiSubtree removed gap before (T0547)Q342 # generation 25: best score out of 40: T0547.try1-opt2 219.69243 cost/residue, 1158 clashes 0.14214 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 5 / 24 = 0.20833 0.00362 ## JiggleSubtree 0 16 4 / 68 = 0.05882 0.00626 ## JiggleSegment 1 19 6 / 56 = 0.10714 0.00831 ## OptSubtree 0 1 0 / 38 = 0.00000 0.00000 ## OptSegment 0 2 2 / 86 = 0.02326 0.01791 ## OptAllSegments 0 0 0 / 33 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 39 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 45 = 0.00000 0.00000 ## TweakPhiSubtree 6 41 23 / 60 = 0.38333 0.01021 ## TweakPhiSegment 1 53 30 / 93 = 0.32258 0.01349 ## TweakPsiSubtree 0 82 43 / 146 = 0.29452 0.05826 ## TweakPsiSegment 1 66 35 / 104 = 0.33654 0.02068 ## TweakPsiPhiSubtree 12 39 17 / 51 = 0.33333 0.00922 ## TweakPsiPhiSegment 7 32 14 / 47 = 0.29787 0.00337 ## TweakHbondSubtree 1 40 17 / 71 = 0.23944 0.02094 ## TweakHbondSegment 2 39 16 / 84 = 0.19048 0.01286 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 2 / 13 = 0.15385 0.00076 ## FixOmega 1 1 1 / 35 = 0.02857 0.00090 ## Backrub 16 34 13 / 50 = 0.26000 0.00465 ## BigBackrub 13 13 5 / 40 = 0.12500 0.00564 ## OneRotamer 0 84 29 / 200 = 0.14500 0.01226 ## ClashingRotamer 0 0 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 23 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 168 = 0.02381 0.06611 ## CloseGap 0 21 4 / 159 = 0.02516 0.07570 ## HealGap 0 17 7 / 102 = 0.06863 0.01585 ## MoveGap 0 2 0 / 38 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 61 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 69 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 62 = 0.01613 0.01022 ## TwoFragment 0 0 1 / 183 = 0.00546 0.00809 ## CrossOver 1 3 2 / 34 = 0.05882 0.00190 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 122 = 0.01639 0.05627 ## ReduceClash 0 1 0 / 28 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)G78 # TweakPsiPhi removed gap before (T0547)N61 # TweakPhi removed gap before (T0547)F66 # TweakPsiPhi removed gap before (T0547)L186 # TweakPhi removed gap before (T0547)S485 # TweakPhi removed gap before (T0547)K27 # TweakPsiSubtree removed gap before (T0547)I333 # TweakPsiSubtree removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)Q281 # TweakPsiSubtree removed gap before (T0547)T534 # TweakPsiSubtree removed gap before (T0547)L600 # TweakPsiPhi removed gap before (T0547)L362 # TweakPsiSubtree removed gap before (T0547)D586 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPsiSubtree removed gap before (T0547)Y83 # TweakPsiSubtree removed gap before (T0547)G235 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)K414 # TweakPsiSubtree removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)H242 # TweakPsiSubtree removed gap before (T0547)I537 # TweakPsiSubtree removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)D383 # TweakPsiPhi removed gap before (T0547)H532 # TweakPsiSubtree removed gap before (T0547)A195 # TweakPsiPhi removed gap before (T0547)K423 # TweakPsiSubtree removed gap before (T0547)F340 # TweakPhi removed gap before (T0547)D564 # TweakPsiSubtree removed gap before (T0547)L108 # TweakPsiSubtree removed gap before (T0547)E552 # generation 26: best score out of 40: T0547.try1-opt2 219.54202 cost/residue, 1154 clashes 0.14165 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 5 / 25 = 0.20000 0.00348 ## JiggleSubtree 0 17 4 / 71 = 0.05634 0.00600 ## JiggleSegment 1 19 6 / 57 = 0.10526 0.00817 ## OptSubtree 0 1 0 / 40 = 0.00000 0.00000 ## OptSegment 0 2 2 / 89 = 0.02247 0.01731 ## OptAllSegments 0 0 0 / 34 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 39 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 47 = 0.00000 0.00000 ## TweakPhiSubtree 6 44 23 / 66 = 0.34848 0.00929 ## TweakPhiSegment 1 53 30 / 94 = 0.31915 0.01335 ## TweakPsiSubtree 0 85 46 / 157 = 0.29299 0.05447 ## TweakPsiSegment 1 70 37 / 113 = 0.32743 0.01953 ## TweakPsiPhiSubtree 12 40 18 / 53 = 0.33962 0.00931 ## TweakPsiPhiSegment 7 33 14 / 50 = 0.28000 0.00317 ## TweakHbondSubtree 1 42 19 / 74 = 0.25676 0.02287 ## TweakHbondSegment 2 41 16 / 87 = 0.18391 0.01241 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 2 / 13 = 0.15385 0.00076 ## FixOmega 1 1 1 / 36 = 0.02778 0.00088 ## Backrub 16 36 13 / 52 = 0.25000 0.00447 ## BigBackrub 13 13 5 / 42 = 0.11905 0.00537 ## OneRotamer 0 88 31 / 212 = 0.14623 0.01210 ## ClashingRotamer 0 0 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 25 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 172 = 0.02326 0.06457 ## CloseGap 0 21 4 / 162 = 0.02469 0.07430 ## HealGap 0 18 7 / 105 = 0.06667 0.01540 ## MoveGap 0 2 0 / 39 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 64 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 69 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 65 = 0.01538 0.00975 ## TwoFragment 0 0 1 / 187 = 0.00535 0.00792 ## CrossOver 1 3 2 / 35 = 0.05714 0.00184 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 127 = 0.01575 0.05405 ## ReduceClash 0 1 0 / 31 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)Y122 # TweakPsiSubtree removed gap before (T0547)I31 # TweakPsiPhi removed gap before (T0547)G77 # TweakPsiSubtree removed gap before (T0547)E505 # TweakPsiPhi removed gap before (T0547)E213 # TweakPsiPhi removed gap before (T0547)F498 # TweakPsiPhi removed gap before (T0547)A553 # TweakPhi removed gap before (T0547)F318 # TweakPsiSubtree removed gap before (T0547)F204 # TweakPsiPhi removed gap before (T0547)H231 # TweakPsiSubtree removed gap before (T0547)D383 # TweakPsiSubtree removed gap before (T0547)G262 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G74 # TweakPsiSubtree removed gap before (T0547)N601 # TweakPsiSubtree removed gap before (T0547)S581 # TweakPhi removed gap before (T0547)D41 # TweakPsiPhi removed gap before (T0547)E546 # TweakPsiSubtree removed gap before (T0547)I302 # TweakPsiSubtree removed gap before (T0547)S403 # TweakPhi removed gap before (T0547)M261 # TweakPsiSubtree removed gap before (T0547)L600 # TweakPhi removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)Q520 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I142 # generation 27: best score out of 40: T0547.try1-opt2 219.54202 cost/residue, 1154 clashes 0.14165 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 5 / 26 = 0.19231 0.00334 ## JiggleSubtree 0 17 4 / 75 = 0.05333 0.00568 ## JiggleSegment 1 20 6 / 62 = 0.09677 0.00751 ## OptSubtree 0 1 0 / 40 = 0.00000 0.00000 ## OptSegment 0 2 2 / 89 = 0.02247 0.01731 ## OptAllSegments 0 0 0 / 34 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 41 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 50 = 0.00000 0.00000 ## TweakPhiSubtree 6 46 26 / 72 = 0.36111 0.00901 ## TweakPhiSegment 1 53 30 / 94 = 0.31915 0.01335 ## TweakPsiSubtree 0 90 48 / 166 = 0.28916 0.05229 ## TweakPsiSegment 1 74 38 / 120 = 0.31667 0.01878 ## TweakPsiPhiSubtree 12 43 20 / 61 = 0.32787 0.00843 ## TweakPsiPhiSegment 7 33 14 / 50 = 0.28000 0.00317 ## TweakHbondSubtree 1 43 19 / 76 = 0.25000 0.02227 ## TweakHbondSegment 3 43 19 / 91 = 0.20879 0.01259 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 2 / 13 = 0.15385 0.00076 ## FixOmega 1 2 2 / 38 = 0.05263 0.00471 ## Backrub 18 38 15 / 55 = 0.27273 0.00490 ## BigBackrub 13 13 5 / 44 = 0.11364 0.00513 ## OneRotamer 0 91 32 / 218 = 0.14679 0.01199 ## ClashingRotamer 0 0 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 25 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 177 = 0.02260 0.06275 ## CloseGap 0 21 4 / 168 = 0.02381 0.07165 ## HealGap 0 18 7 / 113 = 0.06195 0.01431 ## MoveGap 0 2 0 / 41 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 66 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 69 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 69 = 0.01449 0.00918 ## TwoFragment 0 0 1 / 194 = 0.00515 0.00763 ## CrossOver 1 3 2 / 35 = 0.05714 0.00184 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 129 = 0.01550 0.05321 ## ReduceClash 0 1 0 / 31 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)H384 # TweakPsiSubtree removed gap before (T0547)M261 # TweakPhi removed gap before (T0547)N328 # TweakPhi removed gap before (T0547)A405 # TweakPsiSubtree removed gap before (T0547)K283 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)P84 # TweakPhi removed gap before (T0547)E115 # TweakPsiSubtree removed gap before (T0547)L408 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K264 # TweakPsiSubtree removed gap before (T0547)L411 # TweakPhi removed gap before (T0547)N13 # TweakPsiSubtree removed gap before (T0547)E60 # TweakPsiSubtree removed gap before (T0547)V98 # TweakPhi removed gap before (T0547)A553 # TweakPhi removed gap before (T0547)F318 # TweakPhi removed gap before (T0547)I34 # TweakPsiSubtree removed gap before (T0547)E505 # TweakPhi removed gap before (T0547)N152 # TweakPsiPhi removed gap before (T0547)I31 # TweakPsiPhi removed gap before (T0547)I556 # TweakPsiSubtree removed gap before (T0547)R259 # generation 28: best score out of 40: T0547.try1-opt2 219.48967 cost/residue, 1141 clashes 0.14185 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 5 / 27 = 0.18519 0.00322 ## JiggleSubtree 0 17 4 / 76 = 0.05263 0.00560 ## JiggleSegment 1 21 6 / 65 = 0.09231 0.00716 ## OptSubtree 0 1 0 / 41 = 0.00000 0.00000 ## OptSegment 0 2 2 / 93 = 0.02151 0.01657 ## OptAllSegments 0 0 0 / 35 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 43 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 51 = 0.00000 0.00000 ## TweakPhiSubtree 6 49 27 / 75 = 0.36000 0.00876 ## TweakPhiSegment 1 56 31 / 100 = 0.31000 0.01300 ## TweakPsiSubtree 0 91 48 / 172 = 0.27907 0.05047 ## TweakPsiSegment 1 77 40 / 125 = 0.32000 0.01856 ## TweakPsiPhiSubtree 12 45 22 / 63 = 0.34921 0.00888 ## TweakPsiPhiSegment 7 33 14 / 50 = 0.28000 0.00317 ## TweakHbondSubtree 1 46 22 / 80 = 0.27500 0.02176 ## TweakHbondSegment 3 45 20 / 94 = 0.21277 0.01242 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 10 2 / 14 = 0.14286 0.00070 ## FixOmega 2 2 2 / 45 = 0.04444 0.00398 ## Backrub 20 39 16 / 58 = 0.27586 0.00466 ## BigBackrub 13 13 5 / 45 = 0.11111 0.00501 ## OneRotamer 0 95 33 / 225 = 0.14667 0.01187 ## ClashingRotamer 0 0 0 / 36 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 25 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 181 = 0.02210 0.06136 ## CloseGap 0 21 4 / 173 = 0.02312 0.06958 ## HealGap 0 18 7 / 118 = 0.05932 0.01370 ## MoveGap 0 2 0 / 41 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 70 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 72 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 72 = 0.01389 0.00880 ## TwoFragment 0 0 1 / 200 = 0.00500 0.00740 ## CrossOver 1 3 2 / 36 = 0.05556 0.00179 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 133 = 0.01504 0.05161 ## ReduceClash 0 1 0 / 31 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)I407 # TweakPsiSubtree removed gap before (T0547)A251 # TweakPsiSubtree removed gap before (T0547)G143 # TweakPsiPhi removed gap before (T0547)S236 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPsiSubtree removed gap before (T0547)Y90 # TweakPsiSubtree removed gap before (T0547)F510 # TweakPsiPhi removed gap before (T0547)G77 # TweakPsiSubtree removed gap before (T0547)I333 # TweakPhi removed gap before (T0547)Y255 # TweakPsiSubtree removed gap before (T0547)V191 # TweakPsiSubtree removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)L420 # TweakPsiPhi removed gap before (T0547)I609 # TweakPsiSubtree removed gap before (T0547)F73 # TweakPsiSubtree removed gap before (T0547)D401 # TweakPsiSubtree removed gap before (T0547)R577 # TweakPsiSubtree removed gap before (T0547)E521 # TweakPhi removed gap before (T0547)A296 # TweakPhi removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)D466 # TweakPhi removed gap before (T0547)L419 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPsiSubtree removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)A81 # generation 29: best score out of 40: T0547.try1-opt2 219.04143 cost/residue, 1139 clashes 0.14204 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 5 / 28 = 0.17857 0.00311 ## JiggleSubtree 0 17 4 / 77 = 0.05195 0.00553 ## JiggleSegment 1 21 6 / 67 = 0.08955 0.00695 ## OptSubtree 0 1 0 / 42 = 0.00000 0.00000 ## OptSegment 0 3 3 / 98 = 0.03061 0.02158 ## OptAllSegments 0 0 0 / 36 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 52 = 0.00000 0.00000 ## TweakPhiSubtree 6 51 29 / 78 = 0.37179 0.00880 ## TweakPhiSegment 2 58 32 / 105 = 0.30476 0.01258 ## TweakPsiSubtree 0 94 49 / 183 = 0.26776 0.04750 ## TweakPsiSegment 1 81 42 / 133 = 0.31579 0.01749 ## TweakPsiPhiSubtree 13 45 22 / 64 = 0.34375 0.00874 ## TweakPsiPhiSegment 7 33 14 / 52 = 0.26923 0.00305 ## TweakHbondSubtree 1 48 24 / 83 = 0.28916 0.02173 ## TweakHbondSegment 3 46 22 / 98 = 0.22449 0.01218 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 10 2 / 14 = 0.14286 0.00070 ## FixOmega 2 2 2 / 48 = 0.04167 0.00373 ## Backrub 20 43 18 / 64 = 0.28125 0.00502 ## BigBackrub 13 14 6 / 46 = 0.13043 0.00649 ## OneRotamer 0 99 35 / 234 = 0.14957 0.01197 ## ClashingRotamer 0 0 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 27 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 184 = 0.02174 0.06036 ## CloseGap 0 22 4 / 180 = 0.02222 0.06687 ## HealGap 0 18 7 / 120 = 0.05833 0.01348 ## MoveGap 0 2 0 / 42 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 71 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 74 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 73 = 0.01370 0.00868 ## TwoFragment 0 0 1 / 206 = 0.00485 0.00719 ## CrossOver 1 3 2 / 36 = 0.05556 0.00179 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 138 = 0.01449 0.04974 ## ReduceClash 0 1 0 / 31 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)N425 # TweakPsiPhi removed gap before (T0547)A276 # TweakPhi removed gap before (T0547)A170 # TweakPsiSubtree removed gap before (T0547)S236 # TweakPhi removed gap before (T0547)K260 # TweakPhi removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)Y4 # TweakPsiPhi removed gap before (T0547)D41 # TweakPsiPhi removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)N124 # TweakPsiSubtree removed gap before (T0547)I302 # TweakPsiSubtree removed gap before (T0547)V184 # TweakPsiSubtree removed gap before (T0547)D480 # TweakPhi removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)I142 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)E278 # TweakPsiSubtree removed gap before (T0547)N132 # TweakPhi removed gap before (T0547)F318 # TweakPhi removed gap before (T0547)N289 # TweakPsiSubtree removed gap before (T0547)N123 # TweakPsiSubtree removed gap before (T0547)H500 # TweakPsiSubtree removed gap before (T0547)F232 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)D7 # generation 30: best score out of 40: T0547.try1-opt2 218.99480 cost/residue, 1137 clashes 0.14204 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 5 / 29 = 0.17241 0.00300 ## JiggleSubtree 0 17 4 / 77 = 0.05195 0.00553 ## JiggleSegment 1 21 6 / 67 = 0.08955 0.00695 ## OptSubtree 0 1 0 / 43 = 0.00000 0.00000 ## OptSegment 0 3 3 / 104 = 0.02885 0.02034 ## OptAllSegments 0 0 0 / 37 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 53 = 0.00000 0.00000 ## TweakPhiSubtree 7 51 30 / 80 = 0.37500 0.00869 ## TweakPhiSegment 2 59 33 / 110 = 0.30000 0.01211 ## TweakPsiSubtree 0 96 50 / 186 = 0.26882 0.04673 ## TweakPsiSegment 1 86 45 / 145 = 0.31034 0.01670 ## TweakPsiPhiSubtree 13 49 23 / 68 = 0.33824 0.00891 ## TweakPsiPhiSegment 8 33 14 / 53 = 0.26415 0.00299 ## TweakHbondSubtree 1 51 26 / 88 = 0.29545 0.02467 ## TweakHbondSegment 4 47 23 / 100 = 0.23000 0.01251 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 10 2 / 14 = 0.14286 0.00070 ## FixOmega 2 2 2 / 52 = 0.03846 0.00344 ## Backrub 21 49 23 / 71 = 0.32394 0.00503 ## BigBackrub 13 15 6 / 51 = 0.11765 0.00585 ## OneRotamer 0 102 36 / 241 = 0.14938 0.01210 ## ClashingRotamer 0 0 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 29 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 187 = 0.02139 0.05939 ## CloseGap 0 22 4 / 185 = 0.02162 0.06506 ## HealGap 0 18 7 / 124 = 0.05645 0.01304 ## MoveGap 0 2 0 / 43 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 73 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 76 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 77 = 0.01299 0.00823 ## TwoFragment 0 0 1 / 212 = 0.00472 0.00698 ## CrossOver 1 3 2 / 36 = 0.05556 0.00179 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 139 = 0.01439 0.04938 ## ReduceClash 0 1 0 / 32 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)A518 # TweakPsiSubtree removed gap before (T0547)R474 # TweakPsiSubtree removed gap before (T0547)K245 # TweakPhi removed gap before (T0547)H53 # TweakPhi removed gap before (T0547)N289 # TweakPsiSubtree removed gap before (T0547)E285 # TweakPsiPhi removed gap before (T0547)I551 # TweakPhi removed gap before (T0547)D503 # TweakPsiSubtree removed gap before (T0547)A326 # TweakPsiSubtree removed gap before (T0547)L49 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Q588 # TweakPhi removed gap before (T0547)G205 # TweakPsiSubtree removed gap before (T0547)R70 # TweakPhi removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)A114 # TweakPsiPhi removed gap before (T0547)S372 # TweakPhi removed gap before (T0547)F301 # TweakPsiSubtree removed gap before (T0547)E343 # TweakPsiSubtree removed gap before (T0547)I167 # TweakPsiSubtree removed gap before (T0547)E386 # TweakPhi removed gap before (T0547)G421 # TweakPhi removed gap before (T0547)Y90 # TweakPsiPhi removed gap before (T0547)I592 # generation 31: best score out of 40: T0547.try1-opt2 218.90706 cost/residue, 1131 clashes 0.14184 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 6 / 31 = 0.19355 0.00330 ## JiggleSubtree 0 17 5 / 79 = 0.06329 0.00617 ## JiggleSegment 1 21 6 / 69 = 0.08696 0.00675 ## OptSubtree 0 1 0 / 44 = 0.00000 0.00000 ## OptSegment 0 3 3 / 114 = 0.02632 0.01855 ## OptAllSegments 0 0 0 / 39 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 54 = 0.00000 0.00000 ## TweakPhiSubtree 8 55 30 / 84 = 0.35714 0.00828 ## TweakPhiSegment 3 62 36 / 115 = 0.31304 0.01360 ## TweakPsiSubtree 0 98 50 / 191 = 0.26178 0.04551 ## TweakPsiSegment 1 90 49 / 151 = 0.32450 0.01803 ## TweakPsiPhiSubtree 14 50 24 / 70 = 0.34286 0.00867 ## TweakPsiPhiSegment 8 34 14 / 55 = 0.25455 0.00288 ## TweakHbondSubtree 1 54 27 / 98 = 0.27551 0.02305 ## TweakHbondSegment 4 48 23 / 102 = 0.22549 0.01226 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 11 2 / 15 = 0.13333 0.00066 ## FixOmega 2 2 2 / 56 = 0.03571 0.00320 ## Backrub 22 51 23 / 74 = 0.31081 0.00483 ## BigBackrub 13 16 6 / 52 = 0.11538 0.00574 ## OneRotamer 0 104 37 / 246 = 0.15041 0.01185 ## ClashingRotamer 0 0 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 30 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 189 = 0.02116 0.05876 ## CloseGap 0 22 4 / 192 = 0.02083 0.06269 ## HealGap 0 19 7 / 128 = 0.05469 0.01263 ## MoveGap 0 2 0 / 44 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 74 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 77 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 80 = 0.01250 0.00792 ## TwoFragment 0 0 1 / 214 = 0.00467 0.00692 ## CrossOver 1 3 2 / 37 = 0.05405 0.00174 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 144 = 0.01389 0.04767 ## ReduceClash 0 1 0 / 32 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)G252 # TweakPhi removed gap before (T0547)Y366 # TweakPhi removed gap before (T0547)T228 # TweakPhi removed gap before (T0547)Q400 # TweakPsiSubtree removed gap before (T0547)S280 # TweakPsiPhi removed gap before (T0547)G92 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPsiPhi removed gap before (T0547)I412 # TweakPsiPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)S341 # TweakPhi removed gap before (T0547)F447 # TweakPhi removed gap before (T0547)D393 # TweakPsiSubtree removed gap before (T0547)T413 # TweakPhi removed gap before (T0547)K196 # TweakPsiSubtree removed gap before (T0547)I212 # TweakPhi removed gap before (T0547)K286 # TweakPsiSubtree removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)G19 # TweakPsiSubtree removed gap before (T0547)D33 # TweakPhi removed gap before (T0547)Y83 # TweakPhi removed gap before (T0547)E162 # TweakPhi removed gap before (T0547)L275 # TweakPhi removed gap before (T0547)K353 # TweakPsiPhi removed gap before (T0547)K203 # TweakPhi removed gap before (T0547)I167 # TweakPsiSubtree removed gap before (T0547)N61 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPhi removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)D434 # TweakPhi removed gap before (T0547)G272 # TweakPhi removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)E240 # TweakPsiSubtree removed gap before (T0547)G198 # generation 32: best score out of 40: T0547.try1-opt2 218.85851 cost/residue, 1142 clashes 0.14189 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 6 / 31 = 0.19355 0.00330 ## JiggleSubtree 0 19 7 / 82 = 0.08537 0.00712 ## JiggleSegment 1 21 6 / 71 = 0.08451 0.00656 ## OptSubtree 0 1 0 / 45 = 0.00000 0.00000 ## OptSegment 1 3 3 / 116 = 0.02586 0.01823 ## OptAllSegments 0 0 0 / 41 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 54 = 0.00000 0.00000 ## TweakPhiSubtree 8 56 31 / 90 = 0.34444 0.00775 ## TweakPhiSegment 4 70 41 / 128 = 0.32031 0.01247 ## TweakPsiSubtree 0 100 51 / 196 = 0.26020 0.04472 ## TweakPsiSegment 1 95 52 / 159 = 0.32704 0.01879 ## TweakPsiPhiSubtree 15 50 24 / 74 = 0.32432 0.00820 ## TweakPsiPhiSegment 8 35 14 / 56 = 0.25000 0.00283 ## TweakHbondSubtree 1 56 27 / 103 = 0.26214 0.02194 ## TweakHbondSegment 4 50 23 / 105 = 0.21905 0.01191 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 12 2 / 16 = 0.12500 0.00061 ## FixOmega 2 2 2 / 58 = 0.03448 0.00309 ## Backrub 22 52 23 / 76 = 0.30263 0.00470 ## BigBackrub 13 16 6 / 54 = 0.11111 0.00553 ## OneRotamer 0 105 38 / 255 = 0.14902 0.01217 ## ClashingRotamer 0 0 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 32 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 191 = 0.02094 0.05815 ## CloseGap 0 23 4 / 200 = 0.02000 0.06018 ## HealGap 0 19 7 / 131 = 0.05344 0.01234 ## MoveGap 0 2 0 / 44 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 75 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 78 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 84 = 0.01190 0.00754 ## TwoFragment 0 0 1 / 217 = 0.00461 0.00682 ## CrossOver 1 3 2 / 37 = 0.05405 0.00174 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 149 = 0.01342 0.04607 ## ReduceClash 0 1 0 / 32 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)N575 # TweakPsiSubtree removed gap before (T0547)L418 # TweakPsiPhi removed gap before (T0547)L47 # TweakPsiSubtree removed gap before (T0547)N328 # Healed gap before (T0547)Y43 residual break only 0.044 # TweakPsiSubtree removed gap before (T0547)C22 # TweakPhi removed gap before (T0547)E546 # TweakPsiPhi removed gap before (T0547)I142 # TweakPsiSubtree removed gap before (T0547)I592 # TweakPhi removed gap before (T0547)V82 # TweakPsiSubtree removed gap before (T0547)G64 # TweakPsiPhi removed gap before (T0547)M120 # TweakPsiPhi removed gap before (T0547)E240 # TweakPsiPhi removed gap before (T0547)A327 # TweakPhi removed gap before (T0547)R577 # TweakPsiPhi removed gap before (T0547)K71 # TweakPsiPhi removed gap before (T0547)L186 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)S112 # TweakPsiSubtree removed gap before (T0547)D434 # TweakPhi removed gap before (T0547)N11 # TweakPsiSubtree removed gap before (T0547)A296 # TweakPsiPhi removed gap before (T0547)K102 # TweakPhi removed gap before (T0547)A165 # TweakPhi removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)F282 # TweakPhi removed gap before (T0547)G45 # TweakPsiSubtree removed gap before (T0547)D503 # TweakPsiSubtree removed gap before (T0547)R467 # TweakPsiSubtree removed gap before (T0547)I153 # generation 33: best score out of 40: T0547.try1-opt2 218.81575 cost/residue, 1141 clashes 0.14194 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 6 / 33 = 0.18182 0.00310 ## JiggleSubtree 0 20 7 / 88 = 0.07955 0.00663 ## JiggleSegment 1 21 6 / 74 = 0.08108 0.00629 ## OptSubtree 0 1 0 / 46 = 0.00000 0.00000 ## OptSegment 1 3 3 / 119 = 0.02521 0.01777 ## OptAllSegments 0 0 0 / 41 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 54 = 0.00000 0.00000 ## TweakPhiSubtree 8 57 31 / 93 = 0.33333 0.00750 ## TweakPhiSegment 4 72 42 / 132 = 0.31818 0.01254 ## TweakPsiSubtree 0 104 53 / 201 = 0.26368 0.04402 ## TweakPsiSegment 1 100 56 / 166 = 0.33735 0.01955 ## TweakPsiPhiSubtree 16 56 27 / 82 = 0.32927 0.00751 ## TweakPsiPhiSegment 8 36 15 / 57 = 0.26316 0.00326 ## TweakHbondSubtree 1 58 29 / 107 = 0.27103 0.02153 ## TweakHbondSegment 4 52 24 / 111 = 0.21622 0.01157 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 12 2 / 17 = 0.11765 0.00058 ## FixOmega 2 2 2 / 61 = 0.03279 0.00293 ## Backrub 22 55 25 / 82 = 0.30488 0.00449 ## BigBackrub 14 16 6 / 54 = 0.11111 0.00553 ## OneRotamer 0 105 38 / 259 = 0.14672 0.01198 ## ClashingRotamer 0 0 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 34 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 193 = 0.02073 0.05754 ## CloseGap 0 23 4 / 203 = 0.01970 0.05929 ## HealGap 0 19 7 / 135 = 0.05185 0.01198 ## MoveGap 0 2 0 / 46 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 76 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 78 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 86 = 0.01163 0.00737 ## TwoFragment 0 0 1 / 224 = 0.00446 0.00661 ## CrossOver 1 3 2 / 37 = 0.05405 0.00174 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 151 = 0.01325 0.04546 ## ReduceClash 0 2 1 / 36 = 0.02778 0.00109 # TweakPhi removed gap before (T0547)Y396 # TweakPsiSubtree removed gap before (T0547)H527 # TweakPhi removed gap before (T0547)S477 # TweakPhi removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)I167 # TweakPsiSubtree removed gap before (T0547)A476 # TweakPsiSubtree removed gap before (T0547)Y363 # TweakPsiPhi removed gap before (T0547)D562 # TweakPsiSubtree removed gap before (T0547)V277 # TweakPhi removed gap before (T0547)G604 # TweakPsiSubtree removed gap before (T0547)N80 # TweakPsiSubtree removed gap before (T0547)S581 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPhi removed gap before (T0547)L420 # TweakPsiSubtree removed gap before (T0547)S403 # TweakPhi removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)N575 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPhi removed gap before (T0547)L303 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I350 # generation 34: best score out of 40: T0547.try1-opt2 218.46346 cost/residue, 1125 clashes 0.14137 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 6 / 34 = 0.17647 0.00301 ## JiggleSubtree 0 21 8 / 95 = 0.08421 0.01076 ## JiggleSegment 1 21 6 / 75 = 0.08000 0.00621 ## OptSubtree 0 1 0 / 46 = 0.00000 0.00000 ## OptSegment 1 3 3 / 125 = 0.02400 0.01692 ## OptAllSegments 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 56 = 0.00000 0.00000 ## TweakPhiSubtree 8 59 34 / 97 = 0.35052 0.00788 ## TweakPhiSegment 4 75 44 / 137 = 0.32117 0.01249 ## TweakPsiSubtree 0 105 54 / 203 = 0.26601 0.04359 ## TweakPsiSegment 1 105 61 / 178 = 0.34270 0.01921 ## TweakPsiPhiSubtree 16 57 28 / 83 = 0.33735 0.00748 ## TweakPsiPhiSegment 8 36 15 / 57 = 0.26316 0.00326 ## TweakHbondSubtree 1 60 30 / 113 = 0.26549 0.02043 ## TweakHbondSegment 4 54 24 / 114 = 0.21053 0.01126 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 13 3 / 19 = 0.15789 0.00088 ## FixOmega 2 2 2 / 62 = 0.03226 0.00289 ## Backrub 22 58 27 / 86 = 0.31395 0.00455 ## BigBackrub 15 18 7 / 57 = 0.12281 0.00559 ## OneRotamer 0 106 38 / 263 = 0.14449 0.01180 ## ClashingRotamer 0 0 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 35 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 201 = 0.01990 0.05525 ## CloseGap 0 23 4 / 207 = 0.01932 0.05815 ## HealGap 0 19 7 / 135 = 0.05185 0.01198 ## MoveGap 0 2 0 / 46 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 79 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 80 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 89 = 0.01124 0.00712 ## TwoFragment 0 0 1 / 228 = 0.00439 0.00649 ## CrossOver 1 3 2 / 39 = 0.05128 0.00165 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 154 = 0.01299 0.04457 ## ReduceClash 0 2 1 / 37 = 0.02703 0.00106 # TweakPsiSubtree removed gap before (T0547)E250 # TweakPsiPhi removed gap before (T0547)I193 # TweakPsiSubtree removed gap before (T0547)L468 # TweakPsiSubtree removed gap before (T0547)Q424 # TweakPsiPhi removed gap before (T0547)D484 # TweakPhi removed gap before (T0547)F599 # TweakPsiSubtree removed gap before (T0547)K196 # TweakPhi removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPsiPhi removed gap before (T0547)K44 # TweakPsiSubtree removed gap before (T0547)H532 # TweakPhi removed gap before (T0547)T409 # TweakPsiPhi removed gap before (T0547)I129 # TweakPsiSubtree removed gap before (T0547)L337 # TweakPhi removed gap before (T0547)A121 # TweakPsiPhi removed gap before (T0547)I570 # TweakPhi removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)G205 # TweakPsiSubtree removed gap before (T0547)L186 # TweakPsiPhi removed gap before (T0547)N123 # TweakPsiPhi removed gap before (T0547)L218 # TweakPsiPhi removed gap before (T0547)K135 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)T207 # TweakPsiSubtree removed gap before (T0547)Y396 # TweakPsiPhi removed gap before (T0547)H187 # TweakPsiSubtree removed gap before (T0547)I592 # generation 35: best score out of 40: T0547.try1-opt2 218.46085 cost/residue, 1125 clashes 0.14139 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 7 / 35 = 0.20000 0.00328 ## JiggleSubtree 0 22 9 / 100 = 0.09000 0.01181 ## JiggleSegment 1 21 6 / 77 = 0.07792 0.00605 ## OptSubtree 0 1 0 / 47 = 0.00000 0.00000 ## OptSegment 1 3 3 / 129 = 0.02326 0.01639 ## OptAllSegments 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 57 = 0.00000 0.00000 ## TweakPhiSubtree 9 59 34 / 99 = 0.34343 0.00772 ## TweakPhiSegment 4 78 46 / 142 = 0.32394 0.01314 ## TweakPsiSubtree 0 106 55 / 206 = 0.26699 0.04300 ## TweakPsiSegment 2 109 65 / 187 = 0.34759 0.01956 ## TweakPsiPhiSubtree 16 57 28 / 87 = 0.32184 0.00713 ## TweakPsiPhiSegment 8 39 17 / 64 = 0.26562 0.00308 ## TweakHbondSubtree 1 64 31 / 120 = 0.25833 0.01929 ## TweakHbondSegment 4 57 27 / 118 = 0.22881 0.01134 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 13 3 / 20 = 0.15000 0.00083 ## FixOmega 2 2 2 / 65 = 0.03077 0.00275 ## Backrub 22 60 27 / 90 = 0.30000 0.00435 ## BigBackrub 16 18 7 / 59 = 0.11864 0.00540 ## OneRotamer 0 108 38 / 272 = 0.13971 0.01141 ## ClashingRotamer 0 0 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 36 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 4 4 / 203 = 0.01970 0.05471 ## CloseGap 0 23 4 / 208 = 0.01923 0.05787 ## HealGap 0 19 7 / 137 = 0.05109 0.01180 ## MoveGap 0 2 0 / 48 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 79 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 80 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 91 = 0.01099 0.00696 ## TwoFragment 0 0 1 / 235 = 0.00426 0.00630 ## CrossOver 1 3 2 / 39 = 0.05128 0.00165 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 156 = 0.01282 0.04400 ## ReduceClash 0 2 1 / 41 = 0.02439 0.00096 # TweakPsiSubtree removed gap before (T0547)I417 # TweakPhi removed gap before (T0547)M463 # TweakPsiSubtree removed gap before (T0547)V191 # TweakPhi removed gap before (T0547)E505 # TweakPsiSubtree removed gap before (T0547)D484 # TweakPsiSubtree removed gap before (T0547)S445 # TweakPhi removed gap before (T0547)T239 # TweakPsiSubtree removed gap before (T0547)L411 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPsiSubtree removed gap before (T0547)N253 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPsiSubtree removed gap before (T0547)I407 # TweakPhi removed gap before (T0547)G487 # TweakPsiSubtree removed gap before (T0547)Q458 # TweakPsiSubtree removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)F514 # TweakPhi removed gap before (T0547)A247 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)A147 # TweakPhi removed gap before (T0547)I570 # TweakPsiSubtree removed gap before (T0547)D103 # generation 36: best score out of 40: T0547.try1-opt2 218.43404 cost/residue, 1127 clashes 0.14133 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 17 7 / 38 = 0.18421 0.00303 ## JiggleSubtree 0 24 9 / 109 = 0.08257 0.01084 ## JiggleSegment 1 21 6 / 77 = 0.07792 0.00605 ## OptSubtree 0 1 0 / 48 = 0.00000 0.00000 ## OptSegment 1 3 3 / 136 = 0.02206 0.01555 ## OptAllSegments 0 0 0 / 46 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 57 = 0.00000 0.00000 ## TweakPhiSubtree 9 60 34 / 102 = 0.33333 0.00749 ## TweakPhiSegment 5 80 48 / 146 = 0.32877 0.01382 ## TweakPsiSubtree 0 108 58 / 210 = 0.27619 0.04258 ## TweakPsiSegment 2 116 72 / 198 = 0.36364 0.01956 ## TweakPsiPhiSubtree 17 57 28 / 87 = 0.32184 0.00713 ## TweakPsiPhiSegment 8 39 17 / 64 = 0.26562 0.00308 ## TweakHbondSubtree 1 65 32 / 122 = 0.26230 0.01899 ## TweakHbondSegment 4 60 28 / 123 = 0.22764 0.01116 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 13 3 / 20 = 0.15000 0.00083 ## FixOmega 2 2 2 / 66 = 0.03030 0.00271 ## Backrub 22 63 29 / 94 = 0.30851 0.00433 ## BigBackrub 16 18 7 / 60 = 0.11667 0.00531 ## OneRotamer 0 112 38 / 281 = 0.13523 0.01105 ## ClashingRotamer 0 0 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 37 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 5 5 / 210 = 0.02381 0.05321 ## CloseGap 0 24 4 / 212 = 0.01887 0.05678 ## HealGap 0 19 7 / 144 = 0.04861 0.01123 ## MoveGap 0 2 0 / 48 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 81 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 84 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 91 = 0.01099 0.00696 ## TwoFragment 0 0 1 / 239 = 0.00418 0.00619 ## CrossOver 1 3 2 / 39 = 0.05128 0.00165 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 160 = 0.01250 0.04290 ## ReduceClash 0 2 1 / 41 = 0.02439 0.00096 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPhi removed gap before (T0547)R577 # TweakPhi removed gap before (T0547)L48 # TweakPhi removed gap before (T0547)L574 # TweakPhi removed gap before (T0547)N105 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPsiPhi removed gap before (T0547)V191 # TweakPsiPhi removed gap before (T0547)A431 # TweakPsiSubtree removed gap before (T0547)Y90 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPsiPhi removed gap before (T0547)F324 # TweakPhi removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)D566 # TweakPsiSubtree removed gap before (T0547)M571 # TweakPsiSubtree removed gap before (T0547)G143 # TweakPsiSubtree removed gap before (T0547)D422 # TweakPsiSubtree removed gap before (T0547)P176 # TweakPhi removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)G512 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A405 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L600 # TweakPsiPhi removed gap before (T0547)D401 # TweakPsiSubtree removed gap before (T0547)I573 # TweakPhi removed gap before (T0547)I551 # TweakPsiPhi removed gap before (T0547)L339 # TweakPsiPhi removed gap before (T0547)K264 # TweakPhi removed gap before (T0547)L186 # TweakPsiSubtree removed gap before (T0547)A307 # TweakPsiPhi removed gap before (T0547)V336 # TweakPsiPhi removed gap before (T0547)K267 # generation 37: best score out of 40: T0547.try1-opt2 218.36951 cost/residue, 1125 clashes 0.14136 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 17 7 / 38 = 0.18421 0.00303 ## JiggleSubtree 0 24 9 / 114 = 0.07895 0.01036 ## JiggleSegment 1 21 6 / 81 = 0.07407 0.00575 ## OptSubtree 0 1 0 / 48 = 0.00000 0.00000 ## OptSegment 1 3 3 / 140 = 0.02143 0.01511 ## OptAllSegments 0 0 0 / 47 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 58 = 0.00000 0.00000 ## TweakPhiSubtree 9 61 35 / 105 = 0.33333 0.00731 ## TweakPhiSegment 5 84 49 / 154 = 0.31818 0.01312 ## TweakPsiSubtree 0 112 62 / 217 = 0.28571 0.04137 ## TweakPsiSegment 2 118 74 / 205 = 0.36098 0.01907 ## TweakPsiPhiSubtree 17 58 28 / 88 = 0.31818 0.00705 ## TweakPsiPhiSegment 8 43 18 / 71 = 0.25352 0.00347 ## TweakHbondSubtree 1 65 33 / 129 = 0.25581 0.01798 ## TweakHbondSegment 4 62 29 / 125 = 0.23200 0.01107 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 14 4 / 21 = 0.19048 0.00098 ## FixOmega 2 2 2 / 68 = 0.02941 0.00263 ## Backrub 23 65 30 / 96 = 0.31250 0.00430 ## BigBackrub 17 20 8 / 63 = 0.12698 0.00640 ## OneRotamer 0 114 38 / 289 = 0.13149 0.01074 ## ClashingRotamer 0 0 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 38 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 5 5 / 214 = 0.02336 0.05221 ## CloseGap 0 24 4 / 215 = 0.01860 0.05598 ## HealGap 0 19 7 / 149 = 0.04698 0.01085 ## MoveGap 0 2 0 / 49 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 82 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 86 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 92 = 0.01087 0.00689 ## TwoFragment 0 0 1 / 239 = 0.00418 0.00619 ## CrossOver 1 3 2 / 40 = 0.05000 0.00161 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 163 = 0.01227 0.04211 ## ReduceClash 0 2 1 / 45 = 0.02222 0.00087 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPsiSubtree removed gap before (T0547)E60 # TweakPsiSubtree removed gap before (T0547)L446 # TweakPhi removed gap before (T0547)A170 # TweakPhi removed gap before (T0547)L560 # TweakPsiPhi removed gap before (T0547)S403 # TweakPsiSubtree removed gap before (T0547)G42 # TweakPsiSubtree removed gap before (T0547)G143 # TweakPhi removed gap before (T0547)G111 # TweakPhi removed gap before (T0547)K607 # TweakPsiSubtree removed gap before (T0547)E294 # TweakPsiSubtree removed gap before (T0547)K352 # TweakPsiSubtree removed gap before (T0547)E406 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)Y104 # TweakPsiSubtree removed gap before (T0547)A345 # TweakPsiSubtree removed gap before (T0547)E60 # TweakPsiPhi removed gap before (T0547)N508 # TweakPsiSubtree removed gap before (T0547)G42 # TweakPsiSubtree removed gap before (T0547)A476 # TweakPsiSubtree removed gap before (T0547)G150 # TweakPhi removed gap before (T0547)L529 # TweakPsiSubtree removed gap before (T0547)I350 # TweakPhi removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)I537 # TweakPsiSubtree removed gap before (T0547)N355 # TweakPsiSubtree removed gap before (T0547)E386 # TweakPsiSubtree removed gap before (T0547)F301 # TweakPsiPhi removed gap before (T0547)S341 # TweakPsiSubtree removed gap before (T0547)G92 # TweakPhi removed gap before (T0547)N373 # generation 38: best score out of 40: T0547.try1-opt2 218.35310 cost/residue, 1118 clashes 0.14100 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 8 / 40 = 0.20000 0.00316 ## JiggleSubtree 0 25 10 / 121 = 0.08264 0.01083 ## JiggleSegment 1 21 6 / 82 = 0.07317 0.00568 ## OptSubtree 0 1 0 / 48 = 0.00000 0.00000 ## OptSegment 1 3 3 / 142 = 0.02113 0.01489 ## OptAllSegments 0 0 0 / 47 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 58 = 0.00000 0.00000 ## TweakPhiSubtree 9 62 36 / 106 = 0.33962 0.00730 ## TweakPhiSegment 5 85 50 / 162 = 0.30864 0.01250 ## TweakPsiSubtree 0 117 66 / 226 = 0.29204 0.03991 ## TweakPsiSegment 2 122 78 / 216 = 0.36111 0.01870 ## TweakPsiPhiSubtree 17 60 29 / 92 = 0.31522 0.00682 ## TweakPsiPhiSegment 8 45 18 / 73 = 0.24658 0.00337 ## TweakHbondSubtree 1 70 36 / 137 = 0.26277 0.01708 ## TweakHbondSegment 4 62 29 / 130 = 0.22308 0.01064 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 15 4 / 22 = 0.18182 0.00093 ## FixOmega 2 2 2 / 70 = 0.02857 0.00256 ## Backrub 24 66 31 / 97 = 0.31959 0.00448 ## BigBackrub 17 20 8 / 67 = 0.11940 0.00602 ## OneRotamer 0 114 38 / 293 = 0.12969 0.01059 ## ClashingRotamer 0 0 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 38 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 5 5 / 222 = 0.02252 0.05033 ## CloseGap 0 25 4 / 217 = 0.01843 0.05547 ## HealGap 0 19 7 / 150 = 0.04667 0.01078 ## MoveGap 0 2 0 / 50 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 82 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 88 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 96 = 0.01042 0.00660 ## TwoFragment 0 0 1 / 243 = 0.00412 0.00609 ## CrossOver 1 3 2 / 40 = 0.05000 0.00161 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 166 = 0.01205 0.04135 ## ReduceClash 0 2 1 / 47 = 0.02128 0.00084 # TweakPsiPhi removed gap before (T0547)G45 # TweakPsiSubtree removed gap before (T0547)L378 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPsiPhi removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)I462 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)P178 # TweakPsiSubtree removed gap before (T0547)I369 # TweakPsiSubtree removed gap before (T0547)I369 # TweakPhi removed gap before (T0547)E138 # TweakPsiSubtree removed gap before (T0547)I145 # TweakPhi removed gap before (T0547)D360 # TweakPhi removed gap before (T0547)A165 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPhi removed gap before (T0547)E521 # TweakPsiSubtree removed gap before (T0547)E240 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPsiSubtree removed gap before (T0547)F227 # TweakPhi removed gap before (T0547)K506 # TweakPsiPhi removed gap before (T0547)R402 # TweakPsiSubtree removed gap before (T0547)E250 # TweakPhi removed gap before (T0547)I142 # TweakPsiSubtree removed gap before (T0547)N65 # generation 39: best score out of 40: T0547.try1-opt2 218.29948 cost/residue, 1122 clashes 0.14136 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 19 9 / 44 = 0.20455 0.00302 ## JiggleSubtree 0 26 11 / 129 = 0.08527 0.01076 ## JiggleSegment 1 21 6 / 82 = 0.07317 0.00568 ## OptSubtree 0 1 0 / 49 = 0.00000 0.00000 ## OptSegment 1 3 3 / 148 = 0.02027 0.01429 ## OptAllSegments 0 0 0 / 47 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 60 = 0.00000 0.00000 ## TweakPhiSubtree 9 65 38 / 110 = 0.34545 0.00713 ## TweakPhiSegment 5 85 50 / 164 = 0.30488 0.01235 ## TweakPsiSubtree 0 119 66 / 231 = 0.28571 0.03905 ## TweakPsiSegment 2 128 80 / 229 = 0.34934 0.01819 ## TweakPsiPhiSubtree 17 60 29 / 93 = 0.31183 0.00674 ## TweakPsiPhiSegment 9 47 19 / 75 = 0.25333 0.00364 ## TweakHbondSubtree 1 71 36 / 140 = 0.25714 0.01671 ## TweakHbondSegment 4 64 29 / 134 = 0.21642 0.01033 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 18 5 / 25 = 0.20000 0.00101 ## FixOmega 2 2 2 / 73 = 0.02740 0.00245 ## Backrub 24 67 31 / 99 = 0.31313 0.00439 ## BigBackrub 18 20 8 / 70 = 0.11429 0.00576 ## OneRotamer 0 116 39 / 297 = 0.13131 0.01045 ## ClashingRotamer 0 0 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 39 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 5 5 / 226 = 0.02212 0.04944 ## CloseGap 0 25 4 / 219 = 0.01826 0.05496 ## HealGap 0 19 7 / 151 = 0.04636 0.01071 ## MoveGap 0 2 0 / 51 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 83 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 90 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 99 = 0.01010 0.00640 ## TwoFragment 0 0 1 / 247 = 0.00405 0.00599 ## CrossOver 1 3 2 / 43 = 0.04651 0.00150 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 171 = 0.01170 0.04014 ## ReduceClash 0 2 1 / 48 = 0.02083 0.00082 # TweakPsiPhi removed gap before (T0547)T154 # TweakPsiSubtree removed gap before (T0547)S341 # TweakPhi removed gap before (T0547)L511 # TweakPsiSubtree removed gap before (T0547)N61 # TweakPsiSubtree removed gap before (T0547)E12 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I412 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPhi removed gap before (T0547)A307 # TweakPsiSubtree removed gap before (T0547)G610 # TweakPhi removed gap before (T0547)T390 # TweakPsiSubtree removed gap before (T0547)I592 # TweakPhi removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)N65 # TweakPhi removed gap before (T0547)E343 # TweakPsiSubtree removed gap before (T0547)I62 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPsiSubtree removed gap before (T0547)V522 # TweakPhi removed gap before (T0547)Y255 # TweakPsiSubtree removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)S492 # TweakPsiSubtree removed gap before (T0547)L155 # TweakPsiSubtree removed gap before (T0547)E457 # TweakPsiSubtree removed gap before (T0547)Q554 # Healed gap before (T0547)Y43 residual break only 0.044 # TweakPhi removed gap before (T0547)S581 # generation 40: best score out of 40: T0547.try1-opt2 218.21606 cost/residue, 1119 clashes 0.14126 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 20 9 / 46 = 0.19565 0.00289 ## JiggleSubtree 0 26 11 / 132 = 0.08333 0.01052 ## JiggleSegment 1 21 6 / 83 = 0.07229 0.00561 ## OptSubtree 0 1 0 / 49 = 0.00000 0.00000 ## OptSegment 1 3 3 / 151 = 0.01987 0.01401 ## OptAllSegments 0 0 0 / 49 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 60 = 0.00000 0.00000 ## TweakPhiSubtree 9 65 38 / 111 = 0.34234 0.00707 ## TweakPhiSegment 5 91 54 / 172 = 0.31395 0.01273 ## TweakPsiSubtree 0 122 67 / 236 = 0.28390 0.03822 ## TweakPsiSegment 3 134 84 / 241 = 0.34855 0.01796 ## TweakPsiPhiSubtree 17 60 29 / 93 = 0.31183 0.00674 ## TweakPsiPhiSegment 10 47 19 / 78 = 0.24359 0.00350 ## TweakHbondSubtree 1 73 36 / 146 = 0.24658 0.01603 ## TweakHbondSegment 4 65 29 / 140 = 0.20714 0.00988 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 18 5 / 25 = 0.20000 0.00101 ## FixOmega 2 2 2 / 77 = 0.02597 0.00233 ## Backrub 25 69 32 / 103 = 0.31068 0.00442 ## BigBackrub 18 21 9 / 75 = 0.12000 0.00559 ## OneRotamer 0 118 41 / 304 = 0.13487 0.01054 ## ClashingRotamer 0 0 0 / 49 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 39 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 5 5 / 228 = 0.02193 0.04901 ## CloseGap 0 25 4 / 221 = 0.01810 0.05446 ## HealGap 0 19 7 / 152 = 0.04605 0.01064 ## MoveGap 0 2 0 / 53 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 83 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 92 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 104 = 0.00962 0.00609 ## TwoFragment 0 0 1 / 252 = 0.00397 0.00587 ## CrossOver 1 3 2 / 44 = 0.04545 0.00146 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 176 = 0.01136 0.03900 ## ReduceClash 0 2 1 / 49 = 0.02041 0.00080 # TweakPsiPhi removed gap before (T0547)S321 # TweakPhi removed gap before (T0547)D316 # TweakPsiSubtree removed gap before (T0547)K414 # TweakPsiSubtree removed gap before (T0547)H233 # TweakPsiPhi removed gap before (T0547)L385 # TweakPsiPhi removed gap before (T0547)L600 # TweakPsiSubtree removed gap before (T0547)K543 # TweakPhi removed gap before (T0547)R183 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiPhi removed gap before (T0547)I350 # TweakPhi removed gap before (T0547)H53 # TweakPsiSubtree removed gap before (T0547)G133 # TweakPhi removed gap before (T0547)K264 # TweakPsiPhi removed gap before (T0547)A536 # TweakPsiSubtree removed gap before (T0547)I369 # TweakPhi removed gap before (T0547)A276 # TweakPhi removed gap before (T0547)A296 # TweakPsiPhi removed gap before (T0547)D558 # TweakPsiPhi removed gap before (T0547)E308 # TweakPhi removed gap before (T0547)I238 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)L391 # generation 41: best score out of 40: T0547.try1-opt2 218.01089 cost/residue, 1115 clashes 0.14101 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 10 / 49 = 0.20408 0.00272 ## JiggleSubtree 0 26 11 / 138 = 0.07971 0.01006 ## JiggleSegment 1 21 6 / 83 = 0.07229 0.00561 ## OptSubtree 0 1 0 / 50 = 0.00000 0.00000 ## OptSegment 1 3 3 / 161 = 0.01863 0.01314 ## OptAllSegments 0 0 0 / 52 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 45 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 60 = 0.00000 0.00000 ## TweakPhiSubtree 9 66 38 / 113 = 0.33628 0.00694 ## TweakPhiSegment 6 94 56 / 178 = 0.31461 0.01345 ## TweakPsiSubtree 0 123 68 / 240 = 0.28333 0.03770 ## TweakPsiSegment 3 136 85 / 244 = 0.34836 0.01774 ## TweakPsiPhiSubtree 17 60 29 / 95 = 0.30526 0.00660 ## TweakPsiPhiSegment 10 50 20 / 85 = 0.23529 0.00344 ## TweakHbondSubtree 1 75 37 / 153 = 0.24183 0.01543 ## TweakHbondSegment 4 66 29 / 143 = 0.20280 0.00968 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 19 5 / 27 = 0.18519 0.00093 ## FixOmega 2 2 2 / 77 = 0.02597 0.00233 ## Backrub 25 74 35 / 108 = 0.32407 0.00464 ## BigBackrub 19 23 9 / 78 = 0.11538 0.00537 ## OneRotamer 0 119 42 / 308 = 0.13636 0.01052 ## ClashingRotamer 0 0 0 / 50 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 41 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 5 5 / 230 = 0.02174 0.04858 ## CloseGap 0 25 4 / 225 = 0.01778 0.05350 ## HealGap 0 19 7 / 156 = 0.04487 0.01037 ## MoveGap 0 2 0 / 54 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 85 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 94 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 108 = 0.00926 0.00587 ## TwoFragment 0 0 1 / 252 = 0.00397 0.00587 ## CrossOver 1 3 2 / 45 = 0.04444 0.00143 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 178 = 0.01124 0.03856 ## ReduceClash 0 2 1 / 51 = 0.01961 0.00077 # TweakPsiSubtree removed gap before (T0547)K589 # TweakPhi removed gap before (T0547)Y366 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)Y295 # TweakPhi removed gap before (T0547)L583 # TweakPsiSubtree removed gap before (T0547)F134 # TweakPhi removed gap before (T0547)I23 # TweakPsiSubtree removed gap before (T0547)A476 # TweakPsiSubtree removed gap before (T0547)E361 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPsiSubtree removed gap before (T0547)N249 # TweakPhi removed gap before (T0547)H568 # TweakPsiSubtree removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)I140 # TweakPhi removed gap before (T0547)F324 # TweakPhi removed gap before (T0547)D564 # TweakPsiSubtree removed gap before (T0547)L85 # TweakPsiSubtree removed gap before (T0547)D562 # TweakPsiSubtree removed gap before (T0547)I551 # TweakPsiSubtree removed gap before (T0547)N65 # TweakPsiSubtree removed gap before (T0547)I15 # TweakPhi removed gap before (T0547)S555 # TweakPhi removed gap before (T0547)N443 # TweakPsiSubtree removed gap before (T0547)A330 # TweakPsiPhi removed gap before (T0547)G252 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N355 # TweakPhi removed gap before (T0547)R70 # TweakPsiSubtree removed gap before (T0547)G273 # generation 42: best score out of 40: T0547.try1-opt2 218.01073 cost/residue, 1115 clashes 0.14101 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 10 / 50 = 0.20000 0.00266 ## JiggleSubtree 0 26 11 / 144 = 0.07639 0.00964 ## JiggleSegment 1 21 6 / 83 = 0.07229 0.00561 ## OptSubtree 0 1 0 / 51 = 0.00000 0.00000 ## OptSegment 1 3 3 / 166 = 0.01807 0.01274 ## OptAllSegments 0 0 0 / 52 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 45 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 61 = 0.00000 0.00000 ## TweakPhiSubtree 9 68 39 / 118 = 0.33051 0.00694 ## TweakPhiSegment 7 99 57 / 184 = 0.30978 0.01313 ## TweakPsiSubtree 0 129 71 / 249 = 0.28514 0.03639 ## TweakPsiSegment 3 138 88 / 252 = 0.34921 0.01720 ## TweakPsiPhiSubtree 17 61 30 / 96 = 0.31250 0.00654 ## TweakPsiPhiSegment 10 50 20 / 85 = 0.23529 0.00344 ## TweakHbondSubtree 1 76 38 / 160 = 0.23750 0.01590 ## TweakHbondSegment 4 67 32 / 149 = 0.21477 0.00972 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 22 7 / 31 = 0.22581 0.00120 ## FixOmega 2 2 2 / 77 = 0.02597 0.00233 ## Backrub 25 75 36 / 111 = 0.32432 0.00453 ## BigBackrub 21 26 9 / 84 = 0.10714 0.00499 ## OneRotamer 0 120 42 / 312 = 0.13462 0.01038 ## ClashingRotamer 0 0 0 / 51 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 41 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 5 5 / 232 = 0.02155 0.04816 ## CloseGap 0 25 4 / 227 = 0.01762 0.05303 ## HealGap 0 19 7 / 164 = 0.04268 0.00986 ## MoveGap 0 2 0 / 55 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 85 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 96 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 110 = 0.00909 0.00576 ## TwoFragment 0 0 1 / 254 = 0.00394 0.00583 ## CrossOver 1 3 2 / 45 = 0.04444 0.00143 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 181 = 0.01105 0.03792 ## ReduceClash 0 2 1 / 55 = 0.01818 0.00071 # TweakPsiSubtree removed gap before (T0547)D33 # Healed gap before (T0547)Y43 residual break only 0.044 # TweakPsiPhi removed gap before (T0547)G610 # TweakPsiPhi removed gap before (T0547)I412 # TweakPsiPhi removed gap before (T0547)L378 # TweakPsiPhi removed gap before (T0547)C483 # TweakPsiPhi removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)L85 # TweakPhi removed gap before (T0547)Y63 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L85 # TweakPsiSubtree removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)E505 # TweakPsiSubtree removed gap before (T0547)V331 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPsiPhi removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)S579 # TweakPhi removed gap before (T0547)E294 # TweakPsiPhi removed gap before (T0547)W454 # TweakPhi removed gap before (T0547)E164 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPsiSubtree removed gap before (T0547)L186 # TweakPsiSubtree removed gap before (T0547)K310 # TweakPsiPhi removed gap before (T0547)T256 # generation 43: best score out of 40: T0547.try1-opt2 217.77031 cost/residue, 1109 clashes 0.14056 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 10 / 52 = 0.19231 0.00256 ## JiggleSubtree 0 26 11 / 148 = 0.07432 0.00938 ## JiggleSegment 1 21 6 / 83 = 0.07229 0.00561 ## OptSubtree 0 1 0 / 51 = 0.00000 0.00000 ## OptSegment 1 3 3 / 167 = 0.01796 0.01266 ## OptAllSegments 0 0 0 / 55 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 45 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 62 = 0.00000 0.00000 ## TweakPhiSubtree 9 70 39 / 122 = 0.31967 0.00672 ## TweakPhiSegment 7 100 57 / 185 = 0.30811 0.01306 ## TweakPsiSubtree 0 129 72 / 253 = 0.28458 0.03583 ## TweakPsiSegment 3 141 91 / 259 = 0.35135 0.01845 ## TweakPsiPhiSubtree 17 63 30 / 101 = 0.29703 0.00622 ## TweakPsiPhiSegment 10 53 23 / 90 = 0.25556 0.00337 ## TweakHbondSubtree 1 79 38 / 165 = 0.23030 0.01542 ## TweakHbondSegment 4 68 33 / 152 = 0.21711 0.01008 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 23 8 / 34 = 0.23529 0.00128 ## FixOmega 2 3 2 / 79 = 0.02532 0.00227 ## Backrub 26 80 37 / 118 = 0.31356 0.00431 ## BigBackrub 21 26 9 / 85 = 0.10588 0.00493 ## OneRotamer 0 124 42 / 323 = 0.13003 0.01003 ## ClashingRotamer 0 0 0 / 53 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 44 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 5 5 / 237 = 0.02110 0.04715 ## CloseGap 0 25 4 / 229 = 0.01747 0.05256 ## HealGap 0 19 7 / 168 = 0.04167 0.00963 ## MoveGap 0 2 0 / 55 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 85 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 97 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 111 = 0.00901 0.00571 ## TwoFragment 0 0 1 / 255 = 0.00392 0.00581 ## CrossOver 1 3 2 / 45 = 0.04444 0.00143 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 185 = 0.01081 0.03710 ## ReduceClash 0 2 1 / 62 = 0.01613 0.00063 # TweakPsiSubtree removed gap before (T0547)Y565 # TweakPhi removed gap before (T0547)N96 # TweakPsiSubtree removed gap before (T0547)D602 # TweakPsiSubtree removed gap before (T0547)E505 # TweakPsiSubtree removed gap before (T0547)G487 # TweakPsiSubtree removed gap before (T0547)T239 # TweakPsiSubtree removed gap before (T0547)E343 # TweakPsiSubtree removed gap before (T0547)K352 # TweakPsiPhi removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)S477 # TweakPsiPhi removed gap before (T0547)V331 # TweakPsiSubtree removed gap before (T0547)I34 # TweakPhi removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)L515 # TweakPhi removed gap before (T0547)L47 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A427 # TweakPsiSubtree removed gap before (T0547)R439 # TweakPsiSubtree removed gap before (T0547)V21 # TweakPsiSubtree removed gap before (T0547)Q281 # TweakPhi removed gap before (T0547)A195 # TweakPsiSubtree removed gap before (T0547)D469 # TweakPsiSubtree removed gap before (T0547)S280 # TweakPsiSubtree removed gap before (T0547)K283 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)F498 # TweakPsiSubtree removed gap before (T0547)I193 # generation 44: best score out of 40: T0547.try1-opt2 217.31058 cost/residue, 1071 clashes 0.14150 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 12 / 56 = 0.21429 0.00683 ## JiggleSubtree 0 26 11 / 154 = 0.07143 0.00902 ## JiggleSegment 1 21 6 / 85 = 0.07059 0.00548 ## OptSubtree 0 1 0 / 51 = 0.00000 0.00000 ## OptSegment 1 3 3 / 170 = 0.01765 0.01244 ## OptAllSegments 0 0 0 / 57 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 46 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 62 = 0.00000 0.00000 ## TweakPhiSubtree 9 70 39 / 124 = 0.31452 0.00661 ## TweakPhiSegment 8 105 61 / 192 = 0.31771 0.01305 ## TweakPsiSubtree 0 131 72 / 255 = 0.28235 0.03555 ## TweakPsiSegment 3 149 96 / 275 = 0.34909 0.02032 ## TweakPsiPhiSubtree 18 63 30 / 101 = 0.29703 0.00622 ## TweakPsiPhiSegment 10 54 25 / 92 = 0.27174 0.00392 ## TweakHbondSubtree 1 81 38 / 174 = 0.21839 0.01462 ## TweakHbondSegment 4 69 33 / 156 = 0.21154 0.00983 ## TweakMultimer 27 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 24 9 / 37 = 0.24324 0.00124 ## FixOmega 2 3 2 / 79 = 0.02532 0.00227 ## Backrub 28 81 37 / 121 = 0.30579 0.00420 ## BigBackrub 21 26 9 / 85 = 0.10588 0.00493 ## OneRotamer 0 126 43 / 328 = 0.13110 0.01040 ## ClashingRotamer 0 0 0 / 53 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 45 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 242 = 0.02066 0.04617 ## CloseGap 0 25 4 / 233 = 0.01717 0.05166 ## HealGap 0 19 7 / 175 = 0.04000 0.00924 ## MoveGap 0 2 0 / 55 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 88 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 98 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 113 = 0.00885 0.00561 ## TwoFragment 0 0 1 / 258 = 0.00388 0.00574 ## CrossOver 1 3 2 / 45 = 0.04444 0.00143 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 187 = 0.01070 0.03671 ## ReduceClash 0 2 1 / 62 = 0.01613 0.00063 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)N541 # TweakPsiPhi removed gap before (T0547)L411 # TweakPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)F93 # TweakPhi removed gap before (T0547)D40 # TweakPsiSubtree removed gap before (T0547)S341 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)M149 # TweakPsiSubtree removed gap before (T0547)E164 # TweakPsiSubtree removed gap before (T0547)I34 # TweakPsiSubtree removed gap before (T0547)I538 # TweakPsiPhi removed gap before (T0547)D562 # TweakPsiSubtree removed gap before (T0547)G524 # TweakPsiSubtree removed gap before (T0547)L375 # TweakPhi removed gap before (T0547)E457 # TweakPsiPhi removed gap before (T0547)T256 # TweakPsiPhi removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)K245 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPsiPhi removed gap before (T0547)L583 # TweakPsiPhi removed gap before (T0547)Q342 # TweakPsiPhi removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)F498 # TweakPhi removed gap before (T0547)E376 # TweakPsiSubtree removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)G126 # TweakPsiPhi removed gap before (T0547)L48 # TweakPsiSubtree removed gap before (T0547)F599 # TweakPsiSubtree removed gap before (T0547)N61 # TweakPsiPhi removed gap before (T0547)S490 # TweakPhi removed gap before (T0547)Y509 # TweakPsiPhi removed gap before (T0547)D602 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPsiPhi removed gap before (T0547)K171 # TweakPsiPhi removed gap before (T0547)A114 # TweakPhi removed gap before (T0547)L600 # TweakPhi removed gap before (T0547)L186 # generation 45: best score out of 40: T0547.try1-opt2 217.27898 cost/residue, 1071 clashes 0.14150 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 28 15 / 62 = 0.24194 0.00694 ## JiggleSubtree 0 28 12 / 158 = 0.07595 0.00888 ## JiggleSegment 1 21 6 / 85 = 0.07059 0.00548 ## OptSubtree 0 1 0 / 52 = 0.00000 0.00000 ## OptSegment 1 3 3 / 172 = 0.01744 0.01230 ## OptAllSegments 0 0 0 / 58 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 47 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 62 = 0.00000 0.00000 ## TweakPhiSubtree 9 72 39 / 127 = 0.30709 0.00645 ## TweakPhiSegment 8 107 63 / 196 = 0.32143 0.01296 ## TweakPsiSubtree 0 132 74 / 260 = 0.28462 0.03498 ## TweakPsiSegment 3 156 100 / 289 = 0.34602 0.02061 ## TweakPsiPhiSubtree 19 65 31 / 104 = 0.29808 0.00607 ## TweakPsiPhiSegment 10 58 29 / 101 = 0.28713 0.00422 ## TweakHbondSubtree 1 82 39 / 177 = 0.22034 0.01439 ## TweakHbondSegment 4 69 33 / 159 = 0.20755 0.00964 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 24 9 / 38 = 0.23684 0.00120 ## FixOmega 2 3 2 / 80 = 0.02500 0.00224 ## Backrub 29 85 40 / 130 = 0.30769 0.00434 ## BigBackrub 21 27 9 / 86 = 0.10465 0.00487 ## OneRotamer 0 129 43 / 333 = 0.12913 0.01024 ## ClashingRotamer 0 0 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 47 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 245 = 0.02041 0.04561 ## CloseGap 0 25 4 / 235 = 0.01702 0.05122 ## HealGap 0 19 7 / 175 = 0.04000 0.00924 ## MoveGap 0 2 0 / 55 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 92 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 104 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 114 = 0.00877 0.00556 ## TwoFragment 0 0 1 / 261 = 0.00383 0.00567 ## CrossOver 1 3 2 / 45 = 0.04444 0.00143 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 188 = 0.01064 0.03651 ## ReduceClash 0 2 1 / 62 = 0.01613 0.00063 # TweakPhi removed gap before (T0547)A276 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)V516 # TweakPsiSubtree removed gap before (T0547)N601 # TweakPsiSubtree removed gap before (T0547)L385 # TweakPsiPhi removed gap before (T0547)N528 # TweakPsiSubtree removed gap before (T0547)E376 # TweakPhi removed gap before (T0547)Q588 # TweakPhi removed gap before (T0547)Q226 # TweakPsiSubtree removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)M463 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPhi removed gap before (T0547)S112 # TweakPsiSubtree removed gap before (T0547)N201 # TweakPsiSubtree removed gap before (T0547)Q588 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPsiSubtree removed gap before (T0547)N601 # TweakPsiSubtree removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)S368 # TweakPsiSubtree removed gap before (T0547)D364 # TweakPsiSubtree removed gap before (T0547)K414 # TweakPsiSubtree removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPhi removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)I302 # TweakPsiPhi removed gap before (T0547)G143 # TweakPhi removed gap before (T0547)Y295 # TweakPsiSubtree removed gap before (T0547)L163 # TweakPsiSubtree removed gap before (T0547)D364 # TweakPsiSubtree removed gap before (T0547)E346 # TweakPsiPhi removed gap before (T0547)K102 # TweakPhi removed gap before (T0547)G544 # generation 46: best score out of 40: T0547.try1-opt2 217.09630 cost/residue, 1064 clashes 0.14109 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 29 16 / 65 = 0.24615 0.00707 ## JiggleSubtree 0 28 12 / 165 = 0.07273 0.00850 ## JiggleSegment 1 21 6 / 86 = 0.06977 0.00541 ## OptSubtree 0 1 0 / 53 = 0.00000 0.00000 ## OptSegment 1 3 3 / 176 = 0.01705 0.01202 ## OptAllSegments 0 0 0 / 59 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 49 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 63 = 0.00000 0.00000 ## TweakPhiSubtree 9 72 39 / 128 = 0.30469 0.00640 ## TweakPhiSegment 9 111 66 / 205 = 0.32195 0.01261 ## TweakPsiSubtree 0 136 77 / 268 = 0.28731 0.03409 ## TweakPsiSegment 3 164 107 / 302 = 0.35430 0.02138 ## TweakPsiPhiSubtree 19 65 31 / 105 = 0.29524 0.00602 ## TweakPsiPhiSegment 11 61 30 / 104 = 0.28846 0.00412 ## TweakHbondSubtree 1 84 39 / 179 = 0.21788 0.01423 ## TweakHbondSegment 4 69 33 / 161 = 0.20497 0.00952 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 26 11 / 40 = 0.27500 0.00160 ## FixOmega 2 3 2 / 80 = 0.02500 0.00224 ## Backrub 29 88 41 / 137 = 0.29927 0.00435 ## BigBackrub 22 28 9 / 88 = 0.10227 0.00476 ## OneRotamer 0 133 43 / 343 = 0.12536 0.00995 ## ClashingRotamer 0 0 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 48 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 250 = 0.02000 0.04470 ## CloseGap 0 25 4 / 237 = 0.01688 0.05079 ## HealGap 0 19 7 / 177 = 0.03955 0.00914 ## MoveGap 0 2 0 / 57 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 94 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 104 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 115 = 0.00870 0.00551 ## TwoFragment 0 0 1 / 263 = 0.00380 0.00563 ## CrossOver 1 3 2 / 46 = 0.04348 0.00140 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 189 = 0.01058 0.03632 ## ReduceClash 0 2 1 / 63 = 0.01587 0.00062 # TweakPhi removed gap before (T0547)Q437 # TweakPsiPhi removed gap before (T0547)E250 # TweakPsiSubtree removed gap before (T0547)F510 # TweakPsiPhi removed gap before (T0547)E158 # TweakPsiSubtree removed gap before (T0547)T413 # TweakPsiSubtree removed gap before (T0547)V300 # TweakPsiPhi removed gap before (T0547)R183 # TweakPsiPhi removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)F282 # TweakPhi removed gap before (T0547)G512 # TweakPhi removed gap before (T0547)N105 # TweakPsiSubtree removed gap before (T0547)K196 # TweakPhi removed gap before (T0547)Q424 # TweakPsiSubtree removed gap before (T0547)L244 # TweakPsiSubtree removed gap before (T0547)Y545 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I537 # TweakPsiSubtree removed gap before (T0547)H532 # TweakPhi removed gap before (T0547)N459 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPhi removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)Q281 # TweakPsiPhi removed gap before (T0547)L266 # TweakPsiSubtree removed gap before (T0547)G544 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPhi removed gap before (T0547)I31 # generation 47: best score out of 40: T0547.try1-opt2 217.09630 cost/residue, 1064 clashes 0.14109 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 31 16 / 72 = 0.22222 0.00638 ## JiggleSubtree 0 29 12 / 170 = 0.07059 0.00825 ## JiggleSegment 1 21 6 / 88 = 0.06818 0.00529 ## OptSubtree 0 1 0 / 54 = 0.00000 0.00000 ## OptSegment 1 3 3 / 178 = 0.01685 0.01188 ## OptAllSegments 0 0 0 / 59 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 50 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 64 = 0.00000 0.00000 ## TweakPhiSubtree 9 72 39 / 130 = 0.30000 0.00630 ## TweakPhiSegment 9 115 68 / 212 = 0.32075 0.01227 ## TweakPsiSubtree 0 137 78 / 270 = 0.28889 0.03395 ## TweakPsiSegment 3 171 113 / 315 = 0.35873 0.02183 ## TweakPsiPhiSubtree 19 66 31 / 108 = 0.28704 0.00585 ## TweakPsiPhiSegment 13 63 30 / 106 = 0.28302 0.00404 ## TweakHbondSubtree 1 87 39 / 185 = 0.21081 0.01376 ## TweakHbondSegment 4 70 34 / 165 = 0.20606 0.00932 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 27 12 / 45 = 0.26667 0.00155 ## FixOmega 2 3 2 / 80 = 0.02500 0.00224 ## Backrub 30 89 41 / 138 = 0.29710 0.00432 ## BigBackrub 23 29 10 / 91 = 0.10989 0.00506 ## OneRotamer 0 134 43 / 351 = 0.12251 0.00972 ## ClashingRotamer 0 0 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 49 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 255 = 0.01961 0.04382 ## CloseGap 0 25 4 / 239 = 0.01674 0.05036 ## HealGap 0 19 7 / 179 = 0.03911 0.00903 ## MoveGap 0 2 0 / 57 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 96 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 108 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 115 = 0.00870 0.00551 ## TwoFragment 0 0 1 / 268 = 0.00373 0.00552 ## CrossOver 1 3 2 / 47 = 0.04255 0.00137 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 191 = 0.01047 0.03594 ## ReduceClash 0 2 1 / 64 = 0.01562 0.00061 # TweakPsiSubtree removed gap before (T0547)N253 # TweakPhi removed gap before (T0547)E470 # TweakPsiSubtree removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)Y104 # TweakPsiPhi removed gap before (T0547)K17 # TweakPsiSubtree removed gap before (T0547)G594 # TweakPsiSubtree removed gap before (T0547)N575 # TweakPsiSubtree removed gap before (T0547)M463 # TweakPhi removed gap before (T0547)S475 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)I412 # TweakPsiPhi removed gap before (T0547)A345 # TweakPsiSubtree removed gap before (T0547)S208 # TweakPsiSubtree removed gap before (T0547)L54 # TweakPsiSubtree removed gap before (T0547)E595 # TweakPhi removed gap before (T0547)L186 # TweakPsiSubtree removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)N105 # TweakPsiSubtree removed gap before (T0547)G77 # TweakPsiSubtree removed gap before (T0547)P29 # TweakPsiSubtree removed gap before (T0547)E125 # TweakPhi removed gap before (T0547)Y295 # TweakPhi removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)L399 # TweakPsiSubtree removed gap before (T0547)K76 # TweakPhi removed gap before (T0547)Q237 # TweakPhi removed gap before (T0547)N96 # TweakPsiPhi removed gap before (T0547)V277 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPsiSubtree removed gap before (T0547)L418 # TweakPhi removed gap before (T0547)G421 # TweakPsiSubtree removed gap before (T0547)A214 # TweakPsiSubtree removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)I241 # TweakPhi removed gap before (T0547)N221 # TweakPsiPhi removed gap before (T0547)A268 # TweakPsiSubtree removed gap before (T0547)F510 # TweakPsiSubtree removed gap before (T0547)T482 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)S236 # TweakPsiSubtree removed gap before (T0547)L385 # TweakPhi removed gap before (T0547)A476 # generation 48: best score out of 40: T0547.try1-opt2 217.02026 cost/residue, 1067 clashes 0.14115 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 32 19 / 76 = 0.25000 0.00672 ## JiggleSubtree 0 29 13 / 176 = 0.07386 0.00799 ## JiggleSegment 1 21 6 / 88 = 0.06818 0.00529 ## OptSubtree 0 1 0 / 54 = 0.00000 0.00000 ## OptSegment 1 3 3 / 183 = 0.01639 0.01156 ## OptAllSegments 0 0 0 / 60 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 50 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 65 = 0.00000 0.00000 ## TweakPhiSubtree 9 74 40 / 133 = 0.30075 0.00649 ## TweakPhiSegment 9 121 73 / 220 = 0.33182 0.01283 ## TweakPsiSubtree 0 139 80 / 273 = 0.29304 0.03392 ## TweakPsiSegment 3 181 121 / 337 = 0.35905 0.02210 ## TweakPsiPhiSubtree 19 66 31 / 109 = 0.28440 0.00580 ## TweakPsiPhiSegment 14 66 30 / 113 = 0.26549 0.00379 ## TweakHbondSubtree 2 87 39 / 185 = 0.21081 0.01376 ## TweakHbondSegment 5 71 34 / 171 = 0.19883 0.00899 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 29 12 / 48 = 0.25000 0.00145 ## FixOmega 2 3 2 / 81 = 0.02469 0.00221 ## Backrub 30 91 43 / 145 = 0.29655 0.00427 ## BigBackrub 25 29 10 / 93 = 0.10753 0.00495 ## OneRotamer 0 134 44 / 354 = 0.12429 0.00967 ## ClashingRotamer 0 0 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 50 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 257 = 0.01946 0.04348 ## CloseGap 0 25 4 / 241 = 0.01660 0.04995 ## HealGap 0 19 7 / 180 = 0.03889 0.00898 ## MoveGap 0 2 0 / 57 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 96 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 109 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 115 = 0.00870 0.00551 ## TwoFragment 0 0 1 / 275 = 0.00364 0.00538 ## CrossOver 1 3 2 / 47 = 0.04255 0.00137 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 193 = 0.01036 0.03557 ## ReduceClash 0 2 1 / 64 = 0.01562 0.00061 # TweakPsiPhi removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)K203 # TweakPsiSubtree removed gap before (T0547)Q554 # TweakPhi removed gap before (T0547)T130 # TweakPsiPhi removed gap before (T0547)I8 # TweakPhi removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPhi removed gap before (T0547)N575 # TweakPsiSubtree removed gap before (T0547)K71 # TweakPhi removed gap before (T0547)A431 # TweakPsiSubtree removed gap before (T0547)N11 # TweakPsiSubtree removed gap before (T0547)D364 # TweakPhi removed gap before (T0547)L375 # TweakPsiSubtree removed gap before (T0547)K415 # TweakPhi removed gap before (T0547)V522 # TweakPsiSubtree removed gap before (T0547)F93 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)D480 # TweakPhi removed gap before (T0547)K44 # TweakPsiSubtree removed gap before (T0547)L108 # TweakPhi removed gap before (T0547)L244 # TweakPsiSubtree removed gap before (T0547)H532 # TweakPhi removed gap before (T0547)T482 # TweakPsiSubtree removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)I16 # TweakPsiSubtree removed gap before (T0547)H384 # TweakPhi removed gap before (T0547)D586 # TweakPsiSubtree removed gap before (T0547)R474 # TweakPsiSubtree removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)C483 # TweakPhi removed gap before (T0547)G604 # TweakPsiSubtree removed gap before (T0547)S555 # TweakPsiSubtree removed gap before (T0547)Y104 # TweakPsiSubtree removed gap before (T0547)L362 # TweakPhi removed gap before (T0547)H233 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)Y255 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)G273 # generation 49: best score out of 40: T0547.try1-opt2 216.88698 cost/residue, 1056 clashes 0.14015 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 34 20 / 82 = 0.24390 0.00631 ## JiggleSubtree 0 30 14 / 181 = 0.07735 0.00807 ## JiggleSegment 1 21 6 / 88 = 0.06818 0.00529 ## OptSubtree 0 1 0 / 55 = 0.00000 0.00000 ## OptSegment 1 3 3 / 184 = 0.01630 0.01149 ## OptAllSegments 0 0 0 / 60 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 52 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 65 = 0.00000 0.00000 ## TweakPhiSubtree 9 77 43 / 138 = 0.31159 0.00638 ## TweakPhiSegment 9 125 76 / 229 = 0.33188 0.01261 ## TweakPsiSubtree 0 143 83 / 278 = 0.29856 0.03341 ## TweakPsiSegment 3 187 126 / 358 = 0.35196 0.02149 ## TweakPsiPhiSubtree 19 66 31 / 110 = 0.28182 0.00574 ## TweakPsiPhiSegment 16 66 30 / 114 = 0.26316 0.00376 ## TweakHbondSubtree 2 89 40 / 191 = 0.20942 0.01341 ## TweakHbondSegment 5 72 34 / 173 = 0.19653 0.00889 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 32 14 / 53 = 0.26415 0.00133 ## FixOmega 2 3 2 / 82 = 0.02439 0.00218 ## Backrub 32 92 44 / 147 = 0.29932 0.00442 ## BigBackrub 25 29 10 / 95 = 0.10526 0.00485 ## OneRotamer 0 135 44 / 361 = 0.12188 0.00949 ## ClashingRotamer 0 0 0 / 55 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 50 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 261 = 0.01916 0.04281 ## CloseGap 0 25 4 / 244 = 0.01639 0.04933 ## HealGap 0 19 7 / 181 = 0.03867 0.00893 ## MoveGap 0 2 0 / 57 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 98 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 44 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 109 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 119 = 0.00840 0.00532 ## TwoFragment 0 0 1 / 276 = 0.00362 0.00536 ## CrossOver 1 3 2 / 47 = 0.04255 0.00137 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 193 = 0.01036 0.03557 ## ReduceClash 0 2 1 / 65 = 0.01538 0.00060 # TweakPsiSubtree removed gap before (T0547)L223 # TweakPsiPhi removed gap before (T0547)L420 # TweakPhi removed gap before (T0547)K196 # TweakPsiSubtree removed gap before (T0547)F144 # TweakPsiSubtree removed gap before (T0547)V191 # TweakPsiPhi removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)I537 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPhi removed gap before (T0547)N253 # TweakPsiSubtree removed gap before (T0547)L511 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)D383 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)L47 # TweakPsiSubtree removed gap before (T0547)A165 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPhi removed gap before (T0547)V442 # TweakPsiSubtree removed gap before (T0547)K102 # TweakPsiSubtree removed gap before (T0547)F324 # TweakPhi removed gap before (T0547)M2 # TweakPsiSubtree removed gap before (T0547)N179 # TweakPhi removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)K304 # TweakPhi removed gap before (T0547)I145 # TweakPsiSubtree removed gap before (T0547)D7 # TweakPhi removed gap before (T0547)A416 # TweakPsiPhi removed gap before (T0547)L574 # TweakPsiSubtree removed gap before (T0547)I55 # TweakPsiSubtree removed gap before (T0547)K304 # TweakPhi removed gap before (T0547)Q342 # generation 50: best score out of 40: T0547.try1-opt2 216.86322 cost/residue, 1055 clashes 0.14016 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 36 21 / 90 = 0.23333 0.00580 ## JiggleSubtree 0 30 14 / 185 = 0.07568 0.00789 ## JiggleSegment 1 21 6 / 90 = 0.06667 0.00517 ## OptSubtree 0 1 0 / 55 = 0.00000 0.00000 ## OptSegment 1 3 3 / 187 = 0.01604 0.01131 ## OptAllSegments 0 0 0 / 61 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 52 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 66 = 0.00000 0.00000 ## TweakPhiSubtree 10 80 45 / 142 = 0.31690 0.00641 ## TweakPhiSegment 10 128 77 / 234 = 0.32906 0.01244 ## TweakPsiSubtree 0 144 83 / 286 = 0.29021 0.03247 ## TweakPsiSegment 3 194 130 / 371 = 0.35040 0.02081 ## TweakPsiPhiSubtree 19 66 31 / 111 = 0.27928 0.00569 ## TweakPsiPhiSegment 17 67 30 / 117 = 0.25641 0.00366 ## TweakHbondSubtree 2 94 44 / 200 = 0.22000 0.01357 ## TweakHbondSegment 5 74 35 / 179 = 0.19553 0.00859 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 32 14 / 53 = 0.26415 0.00133 ## FixOmega 2 3 2 / 83 = 0.02410 0.00216 ## Backrub 33 93 45 / 149 = 0.30201 0.00437 ## BigBackrub 25 30 11 / 98 = 0.11224 0.00482 ## OneRotamer 0 135 44 / 368 = 0.11957 0.00930 ## ClashingRotamer 0 0 0 / 55 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 50 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 262 = 0.01908 0.04265 ## CloseGap 0 25 4 / 246 = 0.01626 0.04893 ## HealGap 0 19 7 / 182 = 0.03846 0.00888 ## MoveGap 0 2 0 / 58 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 100 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 45 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 112 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 119 = 0.00840 0.00532 ## TwoFragment 0 0 1 / 279 = 0.00358 0.00531 ## CrossOver 1 3 2 / 49 = 0.04082 0.00132 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 195 = 0.01026 0.03520 ## ReduceClash 0 2 1 / 66 = 0.01515 0.00059 # TweakPsiSubtree removed gap before (T0547)G487 # TweakPhi removed gap before (T0547)S581 # TweakPsiSubtree removed gap before (T0547)L271 # TweakPsiPhi removed gap before (T0547)D564 # TweakPhi removed gap before (T0547)N355 # TweakPsiPhi removed gap before (T0547)L600 # TweakPhi removed gap before (T0547)I62 # TweakPsiPhi removed gap before (T0547)D564 # TweakPsiSubtree removed gap before (T0547)I382 # TweakPhi removed gap before (T0547)Q424 # TweakPhi removed gap before (T0547)G544 # TweakPhi removed gap before (T0547)A127 # TweakPsiPhi removed gap before (T0547)K95 # TweakPsiSubtree removed gap before (T0547)T473 # TweakPsiSubtree removed gap before (T0547)K203 # TweakPhi removed gap before (T0547)I6 # TweakPhi removed gap before (T0547)I462 # TweakPsiPhi removed gap before (T0547)F324 # TweakPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)K304 # TweakPhi removed gap before (T0547)K27 # TweakPhi removed gap before (T0547)I388 # TweakPsiSubtree removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)Y104 # TweakPhi removed gap before (T0547)D360 # TweakPsiPhi removed gap before (T0547)F599 # TweakPhi removed gap before (T0547)G524 # TweakPhi removed gap before (T0547)S372 # TweakPhi removed gap before (T0547)T559 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)K175 # TweakPhi removed gap before (T0547)F204 # TweakPsiSubtree removed gap before (T0547)R173 # TweakPhi removed gap before (T0547)S608 # TweakPsiSubtree removed gap before (T0547)G594 # TweakPhi removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)E220 # generation 51: best score out of 40: T0547.try1-opt2 216.85893 cost/residue, 1056 clashes 0.14004 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 36 22 / 94 = 0.23404 0.00564 ## JiggleSubtree 0 30 14 / 190 = 0.07368 0.00769 ## JiggleSegment 1 21 6 / 90 = 0.06667 0.00517 ## OptSubtree 0 1 0 / 57 = 0.00000 0.00000 ## OptSegment 1 3 3 / 187 = 0.01604 0.01131 ## OptAllSegments 0 0 0 / 62 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 53 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 67 = 0.00000 0.00000 ## TweakPhiSubtree 11 84 49 / 147 = 0.33333 0.00683 ## TweakPhiSegment 10 136 82 / 249 = 0.32932 0.01242 ## TweakPsiSubtree 0 146 85 / 291 = 0.29210 0.03202 ## TweakPsiSegment 3 196 131 / 377 = 0.34748 0.02055 ## TweakPsiPhiSubtree 19 67 33 / 114 = 0.28947 0.00573 ## TweakPsiPhiSegment 17 69 31 / 121 = 0.25620 0.00368 ## TweakHbondSubtree 2 94 44 / 203 = 0.21675 0.01337 ## TweakHbondSegment 5 75 35 / 182 = 0.19231 0.00845 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 32 15 / 54 = 0.27778 0.00139 ## FixOmega 2 3 2 / 83 = 0.02410 0.00216 ## Backrub 34 99 45 / 156 = 0.28846 0.00417 ## BigBackrub 25 33 11 / 103 = 0.10680 0.00458 ## OneRotamer 0 136 45 / 375 = 0.12000 0.00917 ## ClashingRotamer 0 0 0 / 57 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 51 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 263 = 0.01901 0.04249 ## CloseGap 0 25 4 / 248 = 0.01613 0.04854 ## HealGap 0 19 7 / 182 = 0.03846 0.00888 ## MoveGap 0 2 0 / 60 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 101 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 45 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 113 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 119 = 0.00840 0.00532 ## TwoFragment 0 0 1 / 285 = 0.00351 0.00519 ## CrossOver 1 3 2 / 49 = 0.04082 0.00132 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 198 = 0.01010 0.03467 ## ReduceClash 0 2 1 / 69 = 0.01449 0.00057 # TweakPhi removed gap before (T0547)I157 # TweakPsiSubtree removed gap before (T0547)R577 # TweakPhi removed gap before (T0547)T413 # TweakPhi removed gap before (T0547)I570 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPsiPhi removed gap before (T0547)L275 # TweakPsiSubtree removed gap before (T0547)D572 # TweakPsiSubtree removed gap before (T0547)K222 # TweakPsiPhi removed gap before (T0547)I319 # TweakPsiSubtree removed gap before (T0547)D393 # TweakPsiSubtree removed gap before (T0547)S381 # TweakPsiSubtree removed gap before (T0547)H379 # TweakPhi removed gap before (T0547)A121 # TweakPsiPhi removed gap before (T0547)K283 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPsiSubtree removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPhi removed gap before (T0547)K543 # TweakPhi removed gap before (T0547)L385 # TweakPsiPhi removed gap before (T0547)G544 # TweakPhi removed gap before (T0547)F73 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPsiPhi removed gap before (T0547)Q309 # TweakPsiSubtree removed gap before (T0547)I407 # TweakPhi removed gap before (T0547)L217 # TweakPsiSubtree removed gap before (T0547)H53 # TweakPsiSubtree removed gap before (T0547)L408 # TweakPsiSubtree removed gap before (T0547)S287 # TweakPsiSubtree removed gap before (T0547)Q309 # TweakPsiPhi removed gap before (T0547)R185 # TweakPsiPhi removed gap before (T0547)A165 # TweakPhi removed gap before (T0547)I537 # TweakPsiSubtree removed gap before (T0547)N541 # TweakPhi removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)Y290 # TweakPsiPhi removed gap before (T0547)L394 # generation 52: best score out of 40: T0547.try1-opt2 216.83514 cost/residue, 1056 clashes 0.14008 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 38 23 / 99 = 0.23232 0.00537 ## JiggleSubtree 0 30 14 / 196 = 0.07143 0.00745 ## JiggleSegment 1 21 6 / 91 = 0.06593 0.00512 ## OptSubtree 0 1 0 / 58 = 0.00000 0.00000 ## OptSegment 1 3 3 / 188 = 0.01596 0.01125 ## OptAllSegments 0 0 0 / 62 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 57 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 68 = 0.00000 0.00000 ## TweakPhiSubtree 11 88 50 / 154 = 0.32468 0.00676 ## TweakPhiSegment 10 138 83 / 253 = 0.32806 0.01246 ## TweakPsiSubtree 0 149 87 / 300 = 0.29000 0.03115 ## TweakPsiSegment 3 201 137 / 389 = 0.35219 0.02018 ## TweakPsiPhiSubtree 19 69 33 / 119 = 0.27731 0.00549 ## TweakPsiPhiSegment 17 71 32 / 124 = 0.25806 0.00372 ## TweakHbondSubtree 2 95 44 / 205 = 0.21463 0.01324 ## TweakHbondSegment 5 77 36 / 187 = 0.19251 0.00823 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 34 16 / 56 = 0.28571 0.00134 ## FixOmega 2 3 2 / 83 = 0.02410 0.00216 ## Backrub 34 100 45 / 158 = 0.28481 0.00412 ## BigBackrub 25 33 11 / 105 = 0.10476 0.00450 ## OneRotamer 0 136 45 / 381 = 0.11811 0.00903 ## ClashingRotamer 0 0 0 / 57 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 51 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 264 = 0.01894 0.04233 ## CloseGap 0 25 4 / 254 = 0.01575 0.04739 ## HealGap 0 19 7 / 184 = 0.03804 0.00879 ## MoveGap 0 2 0 / 60 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 102 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 46 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 115 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 121 = 0.00826 0.00524 ## TwoFragment 0 0 1 / 289 = 0.00346 0.00512 ## CrossOver 1 3 2 / 49 = 0.04082 0.00132 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 198 = 0.01010 0.03467 ## ReduceClash 0 2 1 / 72 = 0.01389 0.00055 # TweakPsiSubtree removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)N179 # TweakPhi removed gap before (T0547)S197 # TweakPsiSubtree removed gap before (T0547)V277 # TweakPsiSubtree removed gap before (T0547)L258 # TweakPsiSubtree removed gap before (T0547)V436 # TweakPhi removed gap before (T0547)I538 # TweakPhi removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)R259 # TweakPsiPhi removed gap before (T0547)H242 # TweakPhi removed gap before (T0547)G252 # TweakPhi removed gap before (T0547)N585 # TweakPhi removed gap before (T0547)K99 # TweakPhi removed gap before (T0547)K68 # TweakPsiSubtree removed gap before (T0547)D572 # TweakPsiPhi removed gap before (T0547)L54 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)A114 # TweakPhi removed gap before (T0547)K27 # TweakPhi removed gap before (T0547)E225 # TweakPsiPhi removed gap before (T0547)A296 # TweakPhi removed gap before (T0547)E521 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPsiPhi removed gap before (T0547)V191 # TweakPsiPhi removed gap before (T0547)K222 # TweakPhi removed gap before (T0547)K95 # TweakPhi removed gap before (T0547)I540 # TweakPsiPhi removed gap before (T0547)I6 # TweakPsiPhi removed gap before (T0547)I302 # TweakPhi removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)L529 # TweakPhi removed gap before (T0547)F232 # TweakPsiSubtree removed gap before (T0547)K260 # TweakPhi removed gap before (T0547)F93 # TweakPsiSubtree removed gap before (T0547)S341 # TweakPsiSubtree removed gap before (T0547)I412 # TweakPhi removed gap before (T0547)L223 # TweakPhi removed gap before (T0547)A114 # TweakPhi removed gap before (T0547)D428 # TweakPsiSubtree removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)E386 # TweakPsiSubtree removed gap before (T0547)K17 # TweakPhi removed gap before (T0547)L224 # TweakPsiSubtree removed gap before (T0547)K171 # TweakPsiSubtree removed gap before (T0547)G517 # TweakPhi removed gap before (T0547)L206 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)K177 # TweakPhi removed gap before (T0547)F510 # generation 53: best score out of 40: T0547.try1-opt2 216.77844 cost/residue, 1059 clashes 0.13997 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 38 23 / 99 = 0.23232 0.00537 ## JiggleSubtree 0 30 14 / 200 = 0.07000 0.00730 ## JiggleSegment 1 21 6 / 92 = 0.06522 0.00506 ## OptSubtree 0 1 0 / 58 = 0.00000 0.00000 ## OptSegment 1 3 3 / 189 = 0.01587 0.01119 ## OptAllSegments 0 0 0 / 63 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 59 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 68 = 0.00000 0.00000 ## TweakPhiSubtree 12 91 52 / 163 = 0.31902 0.00647 ## TweakPhiSegment 10 145 89 / 270 = 0.32963 0.01260 ## TweakPsiSubtree 0 149 87 / 306 = 0.28431 0.03054 ## TweakPsiSegment 3 207 140 / 401 = 0.34913 0.01989 ## TweakPsiPhiSubtree 19 71 35 / 123 = 0.28455 0.00587 ## TweakPsiPhiSegment 17 74 34 / 128 = 0.26562 0.00372 ## TweakHbondSubtree 2 96 45 / 210 = 0.21429 0.01300 ## TweakHbondSegment 5 79 38 / 191 = 0.19895 0.00823 ## TweakMultimer 35 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 35 16 / 59 = 0.27119 0.00127 ## FixOmega 2 3 2 / 84 = 0.02381 0.00213 ## Backrub 34 102 46 / 163 = 0.28221 0.00408 ## BigBackrub 25 33 11 / 107 = 0.10280 0.00441 ## OneRotamer 0 136 45 / 387 = 0.11628 0.00889 ## ClashingRotamer 0 0 0 / 58 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 51 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 267 = 0.01873 0.04185 ## CloseGap 0 25 4 / 254 = 0.01575 0.04739 ## HealGap 0 19 7 / 184 = 0.03804 0.00879 ## MoveGap 0 2 0 / 60 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 103 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 117 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 122 = 0.00820 0.00519 ## TwoFragment 0 0 1 / 291 = 0.00344 0.00509 ## CrossOver 1 3 2 / 50 = 0.04000 0.00129 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 198 = 0.01010 0.03467 ## ReduceClash 0 2 1 / 73 = 0.01370 0.00054 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)P84 # TweakPsiSubtree removed gap before (T0547)Q281 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)E507 # TweakPhi removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)T207 # TweakPsiSubtree removed gap before (T0547)V331 # TweakPhi removed gap before (T0547)E343 # TweakPsiSubtree removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)L468 # TweakPsiSubtree removed gap before (T0547)K589 # TweakPsiSubtree removed gap before (T0547)L100 # TweakPhi removed gap before (T0547)L337 # TweakPsiSubtree removed gap before (T0547)E346 # TweakPhi removed gap before (T0547)L211 # TweakPhi removed gap before (T0547)F453 # TweakPsiSubtree removed gap before (T0547)N603 # TweakPsiSubtree removed gap before (T0547)Y122 # TweakPsiSubtree removed gap before (T0547)A121 # TweakPsiSubtree removed gap before (T0547)G78 # TweakPhi removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)V300 # TweakPsiPhi removed gap before (T0547)G74 # TweakPsiSubtree removed gap before (T0547)I31 # TweakPhi removed gap before (T0547)L523 # TweakPsiSubtree removed gap before (T0547)V611 # TweakPhi removed gap before (T0547)N201 # TweakPhi removed gap before (T0547)A114 # TweakPsiSubtree removed gap before (T0547)F301 # TweakPhi removed gap before (T0547)F453 # TweakPhi removed gap before (T0547)W9 # TweakPsiPhi removed gap before (T0547)N132 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiPhi removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)D572 # TweakPsiSubtree removed gap before (T0547)N11 # TweakPsiSubtree removed gap before (T0547)G126 # TweakPsiPhi removed gap before (T0547)L499 # TweakPsiSubtree removed gap before (T0547)N528 # generation 54: best score out of 40: T0547.try1-opt2 216.77844 cost/residue, 1059 clashes 0.13997 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 39 23 / 105 = 0.21905 0.00506 ## JiggleSubtree 0 30 14 / 202 = 0.06931 0.00723 ## JiggleSegment 1 21 6 / 92 = 0.06522 0.00506 ## OptSubtree 0 1 0 / 59 = 0.00000 0.00000 ## OptSegment 1 3 3 / 192 = 0.01562 0.01102 ## OptAllSegments 0 0 0 / 64 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 61 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 68 = 0.00000 0.00000 ## TweakPhiSubtree 12 92 53 / 168 = 0.31548 0.00637 ## TweakPhiSegment 11 150 91 / 280 = 0.32500 0.01216 ## TweakPsiSubtree 0 150 88 / 316 = 0.27848 0.02957 ## TweakPsiSegment 3 213 143 / 414 = 0.34541 0.01957 ## TweakPsiPhiSubtree 19 71 35 / 123 = 0.28455 0.00587 ## TweakPsiPhiSegment 17 76 34 / 132 = 0.25758 0.00361 ## TweakHbondSubtree 2 99 46 / 218 = 0.21101 0.01261 ## TweakHbondSegment 5 80 38 / 193 = 0.19689 0.00815 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 37 16 / 63 = 0.25397 0.00119 ## FixOmega 3 3 2 / 84 = 0.02381 0.00213 ## Backrub 35 103 46 / 164 = 0.28049 0.00406 ## BigBackrub 26 33 11 / 111 = 0.09910 0.00425 ## OneRotamer 0 138 46 / 394 = 0.11675 0.00874 ## ClashingRotamer 0 0 0 / 58 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 51 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 271 = 0.01845 0.04123 ## CloseGap 0 25 4 / 258 = 0.01550 0.04665 ## HealGap 0 19 7 / 184 = 0.03804 0.00879 ## MoveGap 0 2 0 / 61 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 104 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 117 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 125 = 0.00800 0.00507 ## TwoFragment 0 0 1 / 294 = 0.00340 0.00503 ## CrossOver 1 3 2 / 50 = 0.04000 0.00129 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 198 = 0.01010 0.03467 ## ReduceClash 0 2 1 / 74 = 0.01351 0.00053 # TweakPhi removed gap before (T0547)L54 # TweakPhi removed gap before (T0547)E37 # TweakPsiSubtree removed gap before (T0547)N459 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPsiPhi removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPsiPhi removed gap before (T0547)I15 # TweakPhi removed gap before (T0547)E435 # TweakPhi removed gap before (T0547)E72 # TweakPsiPhi removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)L515 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)S197 # TweakPsiSubtree removed gap before (T0547)L337 # TweakPsiSubtree removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)D316 # TweakPhi removed gap before (T0547)D33 # TweakPsiSubtree removed gap before (T0547)F204 # TweakPsiPhi removed gap before (T0547)N67 # TweakPsiPhi removed gap before (T0547)V82 # TweakPhi removed gap before (T0547)L234 # TweakPhi removed gap before (T0547)D312 # TweakPsiPhi removed gap before (T0547)G273 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPsiPhi removed gap before (T0547)Q520 # TweakPhi removed gap before (T0547)D484 # TweakPhi removed gap before (T0547)L391 # TweakPsiPhi removed gap before (T0547)I537 # TweakPsiSubtree removed gap before (T0547)D3 # TweakPhi removed gap before (T0547)S188 # TweakPsiPhi removed gap before (T0547)N24 # TweakPsiPhi removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)V87 # TweakPhi removed gap before (T0547)R577 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPhi removed gap before (T0547)A268 # TweakPsiPhi removed gap before (T0547)M261 # TweakPhi removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)L529 # TweakPsiPhi removed gap before (T0547)S579 # TweakPhi removed gap before (T0547)I382 # TweakPsiSubtree removed gap before (T0547)K423 # TweakPsiSubtree removed gap before (T0547)R173 # TweakPsiSubtree removed gap before (T0547)N508 # generation 55: best score out of 40: T0547.try1-opt2 216.57057 cost/residue, 1024 clashes 0.14216 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 40 23 / 108 = 0.21296 0.00492 ## JiggleSubtree 0 30 14 / 207 = 0.06763 0.00705 ## JiggleSegment 1 21 6 / 94 = 0.06383 0.00495 ## OptSubtree 0 1 0 / 60 = 0.00000 0.00000 ## OptSegment 1 3 3 / 192 = 0.01562 0.01102 ## OptAllSegments 0 0 0 / 65 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 61 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 68 = 0.00000 0.00000 ## TweakPhiSubtree 14 96 54 / 175 = 0.30857 0.00613 ## TweakPhiSegment 11 154 93 / 291 = 0.31959 0.01178 ## TweakPsiSubtree 0 151 88 / 321 = 0.27414 0.02911 ## TweakPsiSegment 3 218 145 / 424 = 0.34198 0.01975 ## TweakPsiPhiSubtree 20 72 36 / 130 = 0.27692 0.00577 ## TweakPsiPhiSegment 17 79 37 / 138 = 0.26812 0.00360 ## TweakHbondSubtree 2 99 46 / 219 = 0.21005 0.01255 ## TweakHbondSegment 5 83 40 / 199 = 0.20101 0.00796 ## TweakMultimer 39 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 38 17 / 65 = 0.26154 0.00121 ## FixOmega 3 3 2 / 85 = 0.02353 0.00211 ## Backrub 36 104 46 / 165 = 0.27879 0.00403 ## BigBackrub 26 33 11 / 113 = 0.09735 0.00418 ## OneRotamer 0 141 47 / 401 = 0.11721 0.00865 ## ClashingRotamer 0 0 0 / 58 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 52 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 273 = 0.01832 0.04093 ## CloseGap 0 25 4 / 260 = 0.01538 0.04630 ## HealGap 0 19 7 / 186 = 0.03763 0.00869 ## MoveGap 0 2 0 / 61 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 106 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 118 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 126 = 0.00794 0.00503 ## TwoFragment 0 0 1 / 299 = 0.00334 0.00495 ## CrossOver 1 3 2 / 50 = 0.04000 0.00129 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 201 = 0.00995 0.03415 ## ReduceClash 0 2 1 / 76 = 0.01316 0.00052 # TweakPhi removed gap before (T0547)I537 # TweakPsiPhi removed gap before (T0547)Q437 # TweakPhi removed gap before (T0547)E26 # TweakPhi removed gap before (T0547)G143 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)H384 # TweakPsiSubtree removed gap before (T0547)E240 # TweakPsiPhi removed gap before (T0547)N328 # TweakPsiPhi removed gap before (T0547)V336 # TweakPhi removed gap before (T0547)E37 # TweakPhi removed gap before (T0547)K86 # TweakPhi removed gap before (T0547)R402 # TweakPhi removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPsiPhi removed gap before (T0547)G205 # TweakPsiPhi removed gap before (T0547)L155 # TweakPhi removed gap before (T0547)E162 # TweakPhi removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)I478 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPhi removed gap before (T0547)A296 # TweakPsiPhi removed gap before (T0547)I167 # TweakPsiSubtree removed gap before (T0547)L217 # TweakPsiPhi removed gap before (T0547)E162 # TweakPhi removed gap before (T0547)L365 # TweakPsiPhi removed gap before (T0547)G273 # TweakPsiSubtree removed gap before (T0547)N221 # TweakPsiSubtree removed gap before (T0547)L446 # TweakPhi removed gap before (T0547)I556 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPhi removed gap before (T0547)G77 # TweakPsiSubtree removed gap before (T0547)G19 # TweakPsiPhi removed gap before (T0547)F447 # TweakPsiSubtree removed gap before (T0547)E470 # TweakPsiPhi removed gap before (T0547)E457 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)T473 # TweakPhi removed gap before (T0547)A476 # TweakPsiSubtree removed gap before (T0547)E406 # TweakPsiSubtree removed gap before (T0547)T209 # generation 56: best score out of 40: T0547.try1-opt2 216.55914 cost/residue, 1023 clashes 0.14221 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 42 23 / 114 = 0.20175 0.00466 ## JiggleSubtree 0 30 14 / 211 = 0.06635 0.00692 ## JiggleSegment 1 21 6 / 94 = 0.06383 0.00495 ## OptSubtree 0 1 0 / 61 = 0.00000 0.00000 ## OptSegment 1 3 3 / 194 = 0.01546 0.01090 ## OptAllSegments 0 0 0 / 66 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 61 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 69 = 0.00000 0.00000 ## TweakPhiSubtree 14 99 57 / 182 = 0.31319 0.00599 ## TweakPhiSegment 12 157 96 / 301 = 0.31894 0.01150 ## TweakPsiSubtree 0 153 89 / 325 = 0.27385 0.02880 ## TweakPsiSegment 3 223 148 / 435 = 0.34023 0.01944 ## TweakPsiPhiSubtree 20 76 38 / 138 = 0.27536 0.00686 ## TweakPsiPhiSegment 17 80 37 / 141 = 0.26241 0.00352 ## TweakHbondSubtree 2 100 47 / 226 = 0.20796 0.01224 ## TweakHbondSegment 5 84 41 / 204 = 0.20098 0.00793 ## TweakMultimer 39 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 38 17 / 65 = 0.26154 0.00121 ## FixOmega 3 3 2 / 85 = 0.02353 0.00211 ## Backrub 37 104 46 / 166 = 0.27711 0.00401 ## BigBackrub 27 34 12 / 117 = 0.10256 0.00435 ## OneRotamer 0 142 47 / 403 = 0.11663 0.00861 ## ClashingRotamer 0 0 0 / 59 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 52 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 276 = 0.01812 0.04049 ## CloseGap 0 25 4 / 260 = 0.01538 0.04630 ## HealGap 0 19 7 / 190 = 0.03684 0.00851 ## MoveGap 0 2 0 / 63 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 107 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 118 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 126 = 0.00794 0.00503 ## TwoFragment 0 0 1 / 303 = 0.00330 0.00489 ## CrossOver 1 3 2 / 51 = 0.03922 0.00126 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 204 = 0.00980 0.03365 ## ReduceClash 0 2 1 / 78 = 0.01282 0.00050 # TweakPsiSubtree removed gap before (T0547)E595 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L560 # TweakPhi removed gap before (T0547)K20 # TweakPhi removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)G107 # TweakPhi removed gap before (T0547)T482 # TweakPsiSubtree removed gap before (T0547)D380 # TweakPsiSubtree removed gap before (T0547)L139 # TweakPsiSubtree removed gap before (T0547)D41 # TweakPhi removed gap before (T0547)V131 # TweakPhi removed gap before (T0547)L411 # TweakPsiPhi removed gap before (T0547)E37 # TweakPsiPhi removed gap before (T0547)F513 # TweakPhi removed gap before (T0547)S539 # TweakPhi removed gap before (T0547)R577 # TweakPsiSubtree removed gap before (T0547)R293 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)F204 # TweakPsiPhi removed gap before (T0547)F447 # TweakPsiSubtree removed gap before (T0547)G19 # TweakPsiSubtree removed gap before (T0547)I238 # TweakPhi removed gap before (T0547)E37 # TweakPsiSubtree removed gap before (T0547)K352 # TweakPsiPhi removed gap before (T0547)R39 # TweakPhi removed gap before (T0547)A114 # TweakPsiSubtree removed gap before (T0547)Q437 # TweakPsiSubtree removed gap before (T0547)A536 # TweakPsiSubtree removed gap before (T0547)G143 # TweakPsiPhi removed gap before (T0547)M525 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F514 # TweakPsiSubtree removed gap before (T0547)G517 # TweakPsiPhi removed gap before (T0547)A69 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N603 # TweakPsiPhi removed gap before (T0547)I540 # TweakPsiSubtree removed gap before (T0547)N161 # TweakPsiSubtree removed gap before (T0547)S280 # TweakPhi removed gap before (T0547)D558 # TweakPhi removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)I570 # TweakPsiSubtree removed gap before (T0547)L499 # TweakPsiPhi removed gap before (T0547)K607 # TweakPsiSubtree removed gap before (T0547)D484 # TweakPsiSubtree removed gap before (T0547)A119 # TweakPhi removed gap before (T0547)A119 # generation 57: best score out of 40: T0547.try1-opt2 216.46373 cost/residue, 1037 clashes 0.14205 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 45 24 / 117 = 0.20513 0.00461 ## JiggleSubtree 0 30 14 / 212 = 0.06604 0.00689 ## JiggleSegment 1 21 6 / 95 = 0.06316 0.00490 ## OptSubtree 0 1 0 / 61 = 0.00000 0.00000 ## OptSegment 1 3 3 / 197 = 0.01523 0.01074 ## OptAllSegments 0 0 0 / 66 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 62 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 69 = 0.00000 0.00000 ## TweakPhiSubtree 14 103 60 / 186 = 0.32258 0.00629 ## TweakPhiSegment 12 163 100 / 312 = 0.32051 0.01125 ## TweakPsiSubtree 0 153 89 / 327 = 0.27217 0.02863 ## TweakPsiSegment 3 230 152 / 454 = 0.33480 0.01903 ## TweakPsiPhiSubtree 20 79 42 / 145 = 0.28966 0.00693 ## TweakPsiPhiSegment 17 81 38 / 142 = 0.26761 0.00360 ## TweakHbondSubtree 3 101 49 / 232 = 0.21121 0.01200 ## TweakHbondSegment 5 87 44 / 211 = 0.20853 0.00798 ## TweakMultimer 42 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 38 17 / 67 = 0.25373 0.00118 ## FixOmega 3 3 2 / 85 = 0.02353 0.00211 ## Backrub 40 104 46 / 168 = 0.27381 0.00396 ## BigBackrub 28 34 12 / 117 = 0.10256 0.00435 ## OneRotamer 0 143 47 / 406 = 0.11576 0.00854 ## ClashingRotamer 0 0 0 / 59 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 53 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 276 = 0.01812 0.04049 ## CloseGap 0 25 4 / 265 = 0.01509 0.04542 ## HealGap 0 19 7 / 196 = 0.03571 0.00825 ## MoveGap 0 2 0 / 65 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 108 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 120 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 126 = 0.00794 0.00503 ## TwoFragment 0 0 1 / 308 = 0.00325 0.00481 ## CrossOver 1 3 2 / 51 = 0.03922 0.00126 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 208 = 0.00962 0.03300 ## ReduceClash 0 2 1 / 79 = 0.01266 0.00050 # TweakPsiSubtree removed gap before (T0547)L378 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPsiSubtree removed gap before (T0547)I551 # TweakPsiPhi removed gap before (T0547)H500 # TweakPsiPhi removed gap before (T0547)Y366 # TweakPsiPhi removed gap before (T0547)F66 # TweakPhi removed gap before (T0547)R474 # TweakPsiPhi removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)S112 # TweakPhi removed gap before (T0547)S202 # TweakPsiPhi removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)M229 # TweakPsiPhi removed gap before (T0547)L375 # TweakPhi removed gap before (T0547)R323 # TweakPsiSubtree removed gap before (T0547)R259 # TweakPsiPhi removed gap before (T0547)D393 # TweakPhi removed gap before (T0547)V215 # TweakPsiPhi removed gap before (T0547)H242 # TweakPsiSubtree removed gap before (T0547)L515 # TweakPsiSubtree removed gap before (T0547)I269 # TweakPhi removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)L48 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)F232 # TweakPsiPhi removed gap before (T0547)D168 # TweakPhi removed gap before (T0547)D3 # TweakPhi removed gap before (T0547)V436 # TweakPsiPhi removed gap before (T0547)S287 # TweakPhi removed gap before (T0547)A247 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)L351 # TweakPhi removed gap before (T0547)D380 # TweakPsiSubtree removed gap before (T0547)L375 # TweakPsiPhi removed gap before (T0547)V547 # TweakPsiSubtree removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)H527 # TweakPsiPhi removed gap before (T0547)E240 # TweakPsiSubtree removed gap before (T0547)D564 # TweakPsiSubtree removed gap before (T0547)K219 # TweakPhi removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)K203 # generation 58: best score out of 40: T0547.try1-opt2 216.24934 cost/residue, 1018 clashes 0.14225 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 46 25 / 119 = 0.21008 0.00458 ## JiggleSubtree 0 30 14 / 215 = 0.06512 0.00679 ## JiggleSegment 1 21 6 / 95 = 0.06316 0.00490 ## OptSubtree 0 1 0 / 61 = 0.00000 0.00000 ## OptSegment 1 3 3 / 202 = 0.01485 0.01047 ## OptAllSegments 0 0 0 / 69 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 62 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 69 = 0.00000 0.00000 ## TweakPhiSubtree 14 105 61 / 194 = 0.31443 0.00608 ## TweakPhiSegment 12 164 102 / 317 = 0.32177 0.01131 ## TweakPsiSubtree 0 156 90 / 330 = 0.27273 0.02837 ## TweakPsiSegment 3 236 158 / 467 = 0.33833 0.01884 ## TweakPsiPhiSubtree 22 87 46 / 156 = 0.29487 0.00709 ## TweakPsiPhiSegment 19 83 40 / 145 = 0.27586 0.00380 ## TweakHbondSubtree 3 101 49 / 233 = 0.21030 0.01195 ## TweakHbondSegment 5 88 46 / 216 = 0.21296 0.00783 ## TweakMultimer 43 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 40 19 / 71 = 0.26761 0.00113 ## FixOmega 3 3 2 / 85 = 0.02353 0.00211 ## Backrub 42 106 48 / 173 = 0.27746 0.00405 ## BigBackrub 28 34 12 / 121 = 0.09917 0.00421 ## OneRotamer 0 144 48 / 411 = 0.11679 0.00915 ## ClashingRotamer 0 0 0 / 59 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 54 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 279 = 0.01792 0.04005 ## CloseGap 0 25 4 / 268 = 0.01493 0.04491 ## HealGap 0 19 7 / 199 = 0.03518 0.00813 ## MoveGap 0 2 0 / 65 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 111 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 120 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 127 = 0.00787 0.00499 ## TwoFragment 0 0 1 / 311 = 0.00322 0.00476 ## CrossOver 1 3 2 / 52 = 0.03846 0.00124 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 209 = 0.00957 0.03284 ## ReduceClash 0 2 1 / 80 = 0.01250 0.00049 # TweakPsiPhi removed gap before (T0547)G487 # TweakPsiSubtree removed gap before (T0547)K506 # TweakPsiSubtree removed gap before (T0547)S581 # TweakPhi removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)I417 # TweakPhi removed gap before (T0547)L303 # TweakPhi removed gap before (T0547)Q89 # TweakPsiSubtree removed gap before (T0547)G19 # TweakPsiSubtree removed gap before (T0547)L234 # TweakPsiSubtree removed gap before (T0547)L351 # TweakPsiSubtree removed gap before (T0547)L244 # TweakPsiSubtree removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPhi removed gap before (T0547)E37 # TweakPsiSubtree removed gap before (T0547)V397 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPsiPhi removed gap before (T0547)T154 # TweakPsiSubtree removed gap before (T0547)K246 # TweakPhi removed gap before (T0547)V191 # TweakPhi removed gap before (T0547)L583 # TweakPhi removed gap before (T0547)L560 # TweakPsiSubtree removed gap before (T0547)S321 # TweakPsiSubtree removed gap before (T0547)S236 # TweakPsiSubtree removed gap before (T0547)L258 # TweakPsiPhi removed gap before (T0547)E320 # TweakPsiSubtree removed gap before (T0547)D469 # TweakPhi removed gap before (T0547)L497 # TweakPhi removed gap before (T0547)L182 # TweakPsiPhi removed gap before (T0547)S368 # TweakPsiPhi removed gap before (T0547)R288 # TweakPhi removed gap before (T0547)D562 # TweakPsiSubtree removed gap before (T0547)I382 # TweakPsiSubtree removed gap before (T0547)I153 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Y440 # TweakPsiPhi removed gap before (T0547)G610 # TweakPsiSubtree removed gap before (T0547)L606 # TweakPsiPhi removed gap before (T0547)A553 # TweakPsiSubtree removed gap before (T0547)L399 # generation 59: best score out of 40: T0547.try1-opt2 216.22028 cost/residue, 1024 clashes 0.14215 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 46 25 / 121 = 0.20661 0.00451 ## JiggleSubtree 0 30 15 / 216 = 0.06944 0.00677 ## JiggleSegment 1 21 6 / 96 = 0.06250 0.00485 ## OptSubtree 0 1 0 / 63 = 0.00000 0.00000 ## OptSegment 1 3 3 / 205 = 0.01463 0.01032 ## OptAllSegments 0 0 0 / 69 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 64 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 69 = 0.00000 0.00000 ## TweakPhiSubtree 15 109 63 / 202 = 0.31188 0.00607 ## TweakPhiSegment 12 165 103 / 320 = 0.32188 0.01149 ## TweakPsiSubtree 0 160 92 / 340 = 0.27059 0.02759 ## TweakPsiSegment 3 240 161 / 479 = 0.33612 0.01907 ## TweakPsiPhiSubtree 22 91 48 / 161 = 0.29814 0.00689 ## TweakPsiPhiSegment 19 84 40 / 149 = 0.26846 0.00370 ## TweakHbondSubtree 3 102 49 / 235 = 0.20851 0.01185 ## TweakHbondSegment 5 88 46 / 217 = 0.21198 0.00780 ## TweakMultimer 45 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 44 20 / 76 = 0.26316 0.00114 ## FixOmega 3 3 2 / 87 = 0.02299 0.00206 ## Backrub 43 108 49 / 176 = 0.27841 0.00403 ## BigBackrub 28 36 13 / 124 = 0.10484 0.00525 ## OneRotamer 0 145 49 / 416 = 0.11779 0.00909 ## ClashingRotamer 0 0 0 / 59 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 55 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 282 = 0.01773 0.03962 ## CloseGap 0 25 4 / 268 = 0.01493 0.04491 ## HealGap 0 19 7 / 202 = 0.03465 0.00801 ## MoveGap 0 2 0 / 68 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 111 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 121 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 131 = 0.00763 0.00484 ## TwoFragment 0 0 1 / 315 = 0.00317 0.00470 ## CrossOver 1 3 2 / 56 = 0.03571 0.00115 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 210 = 0.00952 0.03269 ## ReduceClash 0 2 1 / 80 = 0.01250 0.00049 # TweakPsiSubtree removed gap before (T0547)E435 # TweakPhi removed gap before (T0547)E162 # TweakPsiSubtree removed gap before (T0547)E552 # TweakPhi removed gap before (T0547)I269 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiPhi removed gap before (T0547)E406 # TweakPsiSubtree removed gap before (T0547)D484 # TweakPsiPhi removed gap before (T0547)A569 # TweakPsiPhi removed gap before (T0547)E343 # TweakPsiPhi removed gap before (T0547)L446 # TweakPsiPhi removed gap before (T0547)L497 # TweakPhi removed gap before (T0547)Q226 # TweakPhi removed gap before (T0547)I180 # TweakPsiSubtree removed gap before (T0547)E138 # TweakPsiSubtree removed gap before (T0547)A268 # TweakPsiSubtree removed gap before (T0547)L365 # TweakPhi removed gap before (T0547)N580 # TweakPsiPhi removed gap before (T0547)A146 # TweakPhi removed gap before (T0547)D360 # TweakPhi removed gap before (T0547)E26 # TweakPsiPhi removed gap before (T0547)E546 # TweakPsiPhi removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)N124 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPhi removed gap before (T0547)V87 # TweakPsiSubtree removed gap before (T0547)L420 # TweakPsiPhi removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)G159 # TweakPhi removed gap before (T0547)V336 # TweakPhi removed gap before (T0547)E294 # TweakPsiSubtree removed gap before (T0547)E470 # TweakPhi removed gap before (T0547)F227 # TweakPsiSubtree removed gap before (T0547)D316 # TweakPhi removed gap before (T0547)L85 # TweakPsiSubtree removed gap before (T0547)H242 # TweakPhi removed gap before (T0547)K177 # TweakPhi removed gap before (T0547)K283 # TweakPsiSubtree removed gap before (T0547)A81 # TweakPsiPhi removed gap before (T0547)L49 # TweakPsiPhi removed gap before (T0547)L244 # TweakPsiPhi removed gap before (T0547)K28 # TweakPsiSubtree removed gap before (T0547)G604 # TweakPhi removed gap before (T0547)T209 # TweakPsiSubtree removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)I540 # TweakPsiSubtree removed gap before (T0547)V397 # generation 60: best score out of 40: T0547.try1-opt2 215.78288 cost/residue, 1010 clashes 0.14222 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 46 25 / 122 = 0.20492 0.00447 ## JiggleSubtree 0 32 15 / 218 = 0.06881 0.00671 ## JiggleSegment 1 21 6 / 96 = 0.06250 0.00485 ## OptSubtree 0 1 0 / 64 = 0.00000 0.00000 ## OptSegment 1 3 3 / 208 = 0.01442 0.01017 ## OptAllSegments 0 0 0 / 69 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 64 = 0.00000 0.00000 ## ShiftSegment 0 3 0 / 72 = 0.00000 0.00000 ## TweakPhiSubtree 16 113 67 / 211 = 0.31754 0.00620 ## TweakPhiSegment 13 167 105 / 328 = 0.32012 0.01133 ## TweakPsiSubtree 0 161 93 / 342 = 0.27193 0.02846 ## TweakPsiSegment 3 246 165 / 496 = 0.33266 0.01965 ## TweakPsiPhiSubtree 22 94 49 / 169 = 0.28994 0.00666 ## TweakPsiPhiSegment 19 87 41 / 153 = 0.26797 0.00374 ## TweakHbondSubtree 3 104 49 / 240 = 0.20417 0.01160 ## TweakHbondSegment 5 90 46 / 220 = 0.20909 0.00769 ## TweakMultimer 46 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 45 21 / 77 = 0.27273 0.00120 ## FixOmega 3 3 2 / 87 = 0.02299 0.00206 ## Backrub 43 110 49 / 180 = 0.27222 0.00394 ## BigBackrub 28 39 13 / 131 = 0.09924 0.00497 ## OneRotamer 0 145 50 / 424 = 0.11792 0.00897 ## ClashingRotamer 0 0 0 / 60 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 56 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 1 5 5 / 285 = 0.01754 0.03921 ## CloseGap 0 25 4 / 271 = 0.01476 0.04442 ## HealGap 0 19 7 / 204 = 0.03431 0.00793 ## MoveGap 0 2 0 / 68 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 111 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 122 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 131 = 0.00763 0.00484 ## TwoFragment 0 0 1 / 317 = 0.00315 0.00467 ## CrossOver 1 3 2 / 56 = 0.03571 0.00115 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 4 2 2 / 210 = 0.00952 0.03269 ## ReduceClash 0 2 1 / 81 = 0.01235 0.00048 # filling super_pool to have at least 40 conformations # TweakPhi removed gap before (T0547)V336 # TweakPsiSubtree removed gap before (T0547)R323 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)L49 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPsiSubtree removed gap before (T0547)E125 # TweakPsiSubtree removed gap before (T0547)C22 # TweakPhi removed gap before (T0547)K283 # TweakPsiSubtree removed gap before (T0547)N528 # TweakPhi removed gap before (T0547)N13 # TweakPsiSubtree removed gap before (T0547)K245 # TweakPhi removed gap before (T0547)S341 # TweakPsiSubtree removed gap before (T0547)R577 # TweakPsiSubtree removed gap before (T0547)A69 # best score in super_pool out of 40: T0547.try1-opt2 at pool[16] 215.77946 cost/residue, 1004 clashes 0.14266 breaks # optimizing backbone with 40 conformations in pool # doing 300 generations, with 100 new conformations in each generation. # keep at most 16 conformations from old pool # TweakPsiPhi removed gap before (T0547)L339 # TweakPsiSubtree removed gap before (T0547)Y90 # TweakPsiSubtree removed gap before (T0547)V584 # TweakPsiPhi removed gap before (T0547)K222 # TweakPsiPhi removed gap before (T0547)T209 # TweakPsiSubtree removed gap before (T0547)A327 # TweakPsiPhi removed gap before (T0547)R577 # TweakPsiSubtree removed gap before (T0547)L38 # TweakPhi removed gap before (T0547)L339 # TweakPhi removed gap before (T0547)A114 # TweakPsiSubtree removed gap before (T0547)I432 # TweakPhi removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)F530 # TweakPsiPhi removed gap before (T0547)E346 # BackrubGuts cancelled---proline or break # generation 1: best score out of 40: T0547.try1-opt2 215.77815 cost/residue, 1004 clashes 0.14266 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 1 = 0.00000 0.00000 ## OptSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 1 / 2 = 0.50000 0.00219 ## TweakPsiSegment 0 2 1 / 4 = 0.25000 0.00351 ## TweakPsiPhiSubtree 1 2 2 / 3 = 0.66667 0.00815 ## TweakPsiPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 1 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 1 1 / 1 = 1.00000 0.00887 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 2 = 0.50000 0.00066 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 0 4 1 / 5 = 0.20000 0.00378 ## BigBackrub 1 1 1 / 2 = 0.50000 0.00722 ## OneRotamer 0 6 1 / 13 = 0.07692 0.01079 ## ClashingRotamer 0 1 0 / 5 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 3 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 8 = 0.00000 0.00000 ## CloseGap 0 0 0 / 2 = 0.00000 0.00000 ## HealGap 0 1 0 / 4 = 0.00000 0.00000 ## MoveGap 0 0 0 / 1 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 2 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 4 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 4 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 2 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 9 = 0.00000 0.00000 ## CrossOver 0 0 0 / 2 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 0 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 1 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 4 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)K370 # TweakPsiPhi removed gap before (T0547)D33 # TweakPsiSubtree removed gap before (T0547)E548 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)D434 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)H233 # TweakPsiPhi removed gap before (T0547)L563 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)R467 # TweakPsiPhi removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)I478 # generation 2: best score out of 40: T0547.try1-opt2 215.63292 cost/residue, 1004 clashes 0.14309 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 2 1 / 5 = 0.20000 0.03214 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 2 = 0.00000 0.00000 ## OptSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 1 1 / 1 = 1.00000 0.01810 ## TweakPsiSubtree 0 5 3 / 6 = 0.50000 0.03006 ## TweakPsiSegment 0 4 3 / 6 = 0.50000 0.00317 ## TweakPsiPhiSubtree 1 3 3 / 5 = 0.60000 0.00598 ## TweakPsiPhiSegment 0 4 1 / 4 = 0.25000 0.00045 ## TweakHbondSubtree 1 4 2 / 6 = 0.33333 0.00859 ## TweakHbondSegment 0 2 1 / 2 = 0.50000 0.00443 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 2 / 3 = 0.66667 0.00074 ## FixOmega 0 0 0 / 2 = 0.00000 0.00000 ## Backrub 1 7 1 / 11 = 0.09091 0.00172 ## BigBackrub 5 2 2 / 5 = 0.40000 0.00390 ## OneRotamer 0 11 3 / 29 = 0.10345 0.00547 ## ClashingRotamer 0 1 0 / 6 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 4 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 10 = 0.00000 0.00000 ## CloseGap 0 0 0 / 7 = 0.00000 0.00000 ## HealGap 0 1 0 / 7 = 0.00000 0.00000 ## MoveGap 0 0 0 / 3 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 6 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 6 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 9 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 5 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 20 = 0.00000 0.00000 ## CrossOver 0 0 0 / 4 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 3 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 5 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G524 # TweakPhi removed gap before (T0547)Q424 # TweakPsiPhi removed gap before (T0547)V547 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)D494 # TweakPsiSubtree removed gap before (T0547)I55 # TweakPsiPhi removed gap before (T0547)A330 # TweakPsiPhi removed gap before (T0547)Q424 # TweakPsiSubtree removed gap before (T0547)L337 # TweakPhi removed gap before (T0547)N404 # TweakPhi removed gap before (T0547)E257 # TweakPsiPhi removed gap before (T0547)D586 # TweakPsiSubtree removed gap before (T0547)L523 # TweakPhi removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)K415 # TweakPsiSubtree removed gap before (T0547)G395 # TweakPsiSubtree removed gap before (T0547)W479 # generation 3: best score out of 40: T0547.try1-opt2 215.53998 cost/residue, 1005 clashes 0.14286 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 4 2 / 13 = 0.15385 0.01466 ## JiggleSegment 1 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 3 = 0.00000 0.00000 ## OptSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 4 3 / 5 = 0.60000 0.02484 ## TweakPsiSubtree 0 7 4 / 10 = 0.40000 0.01927 ## TweakPsiSegment 0 5 4 / 9 = 0.44444 0.00215 ## TweakPsiPhiSubtree 2 3 3 / 5 = 0.60000 0.00598 ## TweakPsiPhiSegment 0 8 3 / 8 = 0.37500 0.00178 ## TweakHbondSubtree 1 6 3 / 9 = 0.33333 0.00934 ## TweakHbondSegment 0 3 1 / 3 = 0.33333 0.00296 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 2 / 3 = 0.66667 0.00074 ## FixOmega 0 0 0 / 3 = 0.00000 0.00000 ## Backrub 2 8 1 / 12 = 0.08333 0.00157 ## BigBackrub 6 3 2 / 8 = 0.25000 0.00244 ## OneRotamer 0 17 5 / 43 = 0.11628 0.00453 ## ClashingRotamer 0 1 0 / 6 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 6 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 13 = 0.00000 0.00000 ## CloseGap 0 0 0 / 8 = 0.00000 0.00000 ## HealGap 0 1 0 / 10 = 0.00000 0.00000 ## MoveGap 0 0 0 / 4 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 12 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 17 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 6 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 28 = 0.00000 0.00000 ## CrossOver 0 0 0 / 6 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 7 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 7 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)V522 # TweakPhi removed gap before (T0547)L600 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A165 # TweakPsiPhi removed gap before (T0547)K423 # TweakPhi removed gap before (T0547)T534 # TweakPsiSubtree removed gap before (T0547)L234 # TweakPsiPhi removed gap before (T0547)M525 # TweakPhi removed gap before (T0547)G159 # TweakPsiSubtree removed gap before (T0547)N603 # TweakPhi removed gap before (T0547)I570 # TweakPhi removed gap before (T0547)D103 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F340 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G421 # TweakPhi removed gap before (T0547)A268 # TweakPsiSubtree removed gap before (T0547)I34 # generation 4: best score out of 40: T0547.try1-opt2 215.53160 cost/residue, 1006 clashes 0.14281 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 4 2 / 13 = 0.15385 0.01466 ## JiggleSegment 1 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 1 / 7 = 0.14286 0.00235 ## TweakPhiSegment 0 8 3 / 12 = 0.25000 0.01035 ## TweakPsiSubtree 0 9 5 / 14 = 0.35714 0.01376 ## TweakPsiSegment 0 6 4 / 10 = 0.40000 0.00194 ## TweakPsiPhiSubtree 2 5 4 / 7 = 0.57143 0.00768 ## TweakPsiPhiSegment 0 9 3 / 10 = 0.30000 0.00142 ## TweakHbondSubtree 1 10 6 / 13 = 0.46154 0.00959 ## TweakHbondSegment 0 3 1 / 4 = 0.25000 0.00222 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 2 / 4 = 0.50000 0.00055 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 7 8 1 / 13 = 0.07692 0.00145 ## BigBackrub 6 5 2 / 11 = 0.18182 0.00177 ## OneRotamer 0 22 7 / 60 = 0.11667 0.00525 ## ClashingRotamer 0 1 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 1 1 0 / 7 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 15 = 0.00000 0.00000 ## CloseGap 0 0 0 / 9 = 0.00000 0.00000 ## HealGap 0 1 0 / 15 = 0.00000 0.00000 ## MoveGap 0 0 0 / 4 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 14 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 10 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 20 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 8 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 42 = 0.00000 0.00000 ## CrossOver 0 0 0 / 9 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 9 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 7 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)Q281 # TweakPhi removed gap before (T0547)L411 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)N221 # TweakPhi removed gap before (T0547)K27 # TweakPsiPhi removed gap before (T0547)E552 # TweakPhi removed gap before (T0547)G517 # TweakPhi removed gap before (T0547)N18 # TweakPhi removed gap before (T0547)K177 # TweakPsiPhi removed gap before (T0547)I129 # TweakPsiPhi removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)E546 # TweakPsiSubtree removed gap before (T0547)K493 # TweakPsiSubtree removed gap before (T0547)K196 # TweakPhi removed gap before (T0547)G74 # TweakPhi removed gap before (T0547)I269 # TweakPhi removed gap before (T0547)N11 # TweakPsiPhi removed gap before (T0547)G190 # TweakPsiSubtree removed gap before (T0547)L223 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)V516 # generation 5: best score out of 40: T0547.try1-opt2 214.99290 cost/residue, 1002 clashes 0.13956 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 1 / 4 = 0.25000 0.02863 ## JiggleSubtree 0 4 2 / 17 = 0.11765 0.01121 ## JiggleSegment 1 1 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 2 / 8 = 0.25000 0.00393 ## TweakPhiSegment 0 12 4 / 22 = 0.18182 0.01409 ## TweakPsiSubtree 0 12 7 / 20 = 0.35000 0.01027 ## TweakPsiSegment 0 7 4 / 11 = 0.36364 0.00176 ## TweakPsiPhiSubtree 2 9 5 / 12 = 0.41667 0.00782 ## TweakPsiPhiSegment 0 9 3 / 11 = 0.27273 0.00129 ## TweakHbondSubtree 1 13 7 / 19 = 0.36842 0.00658 ## TweakHbondSegment 0 3 1 / 4 = 0.25000 0.00222 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 4 / 8 = 0.50000 0.00217 ## FixOmega 0 0 0 / 5 = 0.00000 0.00000 ## Backrub 7 8 1 / 13 = 0.07692 0.00145 ## BigBackrub 7 6 2 / 13 = 0.15385 0.00150 ## OneRotamer 0 26 8 / 69 = 0.11594 0.00519 ## ClashingRotamer 0 1 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 1 1 0 / 9 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 18 = 0.00000 0.00000 ## CloseGap 0 1 1 / 10 = 0.10000 0.07182 ## HealGap 0 1 0 / 19 = 0.00000 0.00000 ## MoveGap 0 0 0 / 5 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 20 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 22 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 10 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 51 = 0.00000 0.00000 ## CrossOver 0 0 0 / 11 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 10 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 7 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)E225 # Healed gap before (T0547)P371 residual break only 0.004 # TweakPsiSubtree removed gap before (T0547)N80 # TweakPhi removed gap before (T0547)H527 # TweakPhi removed gap before (T0547)I269 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPhi removed gap before (T0547)L515 # TweakPsiPhi removed gap before (T0547)L497 # TweakPhi removed gap before (T0547)E457 # TweakPsiPhi removed gap before (T0547)I59 # TweakPsiSubtree removed gap before (T0547)K222 # TweakPhi removed gap before (T0547)N284 # TweakPsiPhi removed gap before (T0547)I302 # TweakPsiPhi removed gap before (T0547)R185 # TweakPsiPhi removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)P128 # TweakPhi removed gap before (T0547)E546 # TweakPsiPhi removed gap before (T0547)G455 # TweakPhi removed gap before (T0547)L606 # TweakPsiPhi removed gap before (T0547)D103 # TweakPhi removed gap before (T0547)L560 # TweakPhi removed gap before (T0547)I462 # TweakPsiPhi removed gap before (T0547)E552 # TweakPhi removed gap before (T0547)G143 # TweakPsiSubtree removed gap before (T0547)G64 # generation 6: best score out of 40: T0547.try1-opt2 214.80759 cost/residue, 991 clashes 0.14075 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 2 / 5 = 0.40000 0.02303 ## JiggleSubtree 0 5 2 / 19 = 0.10526 0.01003 ## JiggleSegment 1 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 9 = 0.00000 0.00000 ## OptSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 6 / 15 = 0.40000 0.00510 ## TweakPhiSegment 1 15 6 / 26 = 0.23077 0.01737 ## TweakPsiSubtree 0 13 8 / 23 = 0.34783 0.01069 ## TweakPsiSegment 0 8 5 / 13 = 0.38462 0.00285 ## TweakPsiPhiSubtree 3 14 8 / 17 = 0.47059 0.00837 ## TweakPsiPhiSegment 0 10 4 / 15 = 0.26667 0.00253 ## TweakHbondSubtree 1 13 7 / 20 = 0.35000 0.00625 ## TweakHbondSegment 0 5 2 / 7 = 0.28571 0.00152 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 6 / 11 = 0.54545 0.00280 ## FixOmega 0 0 0 / 7 = 0.00000 0.00000 ## Backrub 8 8 2 / 14 = 0.14286 0.00147 ## BigBackrub 7 7 2 / 16 = 0.12500 0.00122 ## OneRotamer 0 28 8 / 79 = 0.10127 0.00454 ## ClashingRotamer 0 1 0 / 11 = 0.00000 0.00000 ## ClusteredRotamer 1 1 0 / 9 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 20 = 0.00000 0.00000 ## CloseGap 0 3 2 / 18 = 0.11111 0.07980 ## HealGap 0 3 1 / 25 = 0.04000 0.00608 ## MoveGap 0 0 0 / 5 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 27 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 25 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 12 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 57 = 0.00000 0.00000 ## CrossOver 0 0 0 / 12 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 11 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 9 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)S188 # TweakPsiSubtree removed gap before (T0547)N305 # TweakPsiPhi removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)D469 # TweakPhi removed gap before (T0547)L391 # TweakPsiSubtree removed gap before (T0547)I417 # TweakPhi removed gap before (T0547)D136 # TweakPhi removed gap before (T0547)F453 # TweakPhi removed gap before (T0547)R402 # TweakPsiPhi removed gap before (T0547)E37 # TweakPsiSubtree removed gap before (T0547)D466 # Closed gap before (T0547)T154 # TweakPsiPhi removed gap before (T0547)L523 # generation 7: best score out of 40: T0547.try1-opt2 214.80759 cost/residue, 991 clashes 0.14075 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 2 / 6 = 0.33333 0.01919 ## JiggleSubtree 0 6 2 / 23 = 0.08696 0.00828 ## JiggleSegment 1 1 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 8 6 / 16 = 0.37500 0.00478 ## TweakPhiSegment 1 18 7 / 29 = 0.24138 0.01648 ## TweakPsiSubtree 0 15 10 / 26 = 0.38462 0.01059 ## TweakPsiSegment 1 10 5 / 15 = 0.33333 0.00247 ## TweakPsiPhiSubtree 3 16 9 / 19 = 0.47368 0.00799 ## TweakPsiPhiSegment 0 11 4 / 16 = 0.25000 0.00237 ## TweakHbondSubtree 1 15 8 / 23 = 0.34783 0.01315 ## TweakHbondSegment 0 5 2 / 8 = 0.25000 0.00133 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 6 / 13 = 0.46154 0.00237 ## FixOmega 0 0 0 / 8 = 0.00000 0.00000 ## Backrub 8 10 2 / 16 = 0.12500 0.00128 ## BigBackrub 7 7 2 / 17 = 0.11765 0.00115 ## OneRotamer 0 31 9 / 87 = 0.10345 0.00499 ## ClashingRotamer 0 2 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 1 1 0 / 10 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 26 = 0.00000 0.00000 ## CloseGap 0 4 2 / 31 = 0.06452 0.04634 ## HealGap 0 4 1 / 30 = 0.03333 0.00507 ## MoveGap 0 0 0 / 6 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 30 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 26 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 16 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 64 = 0.00000 0.00000 ## CrossOver 0 0 0 / 13 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 15 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 14 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)T482 # TweakPsiPhi removed gap before (T0547)H500 # TweakPhi removed gap before (T0547)L600 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPhi removed gap before (T0547)E561 # TweakPhi removed gap before (T0547)G604 # TweakPsiPhi removed gap before (T0547)F453 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPsiPhi removed gap before (T0547)L529 # TweakPsiSubtree removed gap before (T0547)G78 # TweakPhi removed gap before (T0547)N289 # generation 8: best score out of 40: T0547.try1-opt2 214.78181 cost/residue, 995 clashes 0.14134 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 3 / 12 = 0.25000 0.00962 ## JiggleSubtree 0 7 2 / 24 = 0.08333 0.00794 ## JiggleSegment 1 1 0 / 16 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 11 = 0.00000 0.00000 ## OptSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 11 7 / 20 = 0.35000 0.00395 ## TweakPhiSegment 1 20 7 / 31 = 0.22581 0.01542 ## TweakPsiSubtree 0 18 12 / 31 = 0.38710 0.00898 ## TweakPsiSegment 1 10 5 / 15 = 0.33333 0.00247 ## TweakPsiPhiSubtree 3 17 10 / 21 = 0.47619 0.00737 ## TweakPsiPhiSegment 0 12 4 / 17 = 0.23529 0.00223 ## TweakHbondSubtree 1 19 10 / 28 = 0.35714 0.01205 ## TweakHbondSegment 0 9 3 / 12 = 0.25000 0.00284 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 6 / 13 = 0.46154 0.00237 ## FixOmega 0 0 0 / 10 = 0.00000 0.00000 ## Backrub 8 11 2 / 17 = 0.11765 0.00121 ## BigBackrub 7 7 2 / 18 = 0.11111 0.00108 ## OneRotamer 0 33 10 / 94 = 0.10638 0.00570 ## ClashingRotamer 0 2 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 11 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 31 = 0.00000 0.00000 ## CloseGap 0 5 2 / 39 = 0.05128 0.03683 ## HealGap 0 5 1 / 34 = 0.02941 0.00447 ## MoveGap 0 0 0 / 11 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 35 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 28 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 19 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 71 = 0.00000 0.00000 ## CrossOver 0 0 0 / 13 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 16 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 16 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)S287 # TweakPhi removed gap before (T0547)A405 # TweakPsiPhi removed gap before (T0547)E148 # TweakPsiSubtree removed gap before (T0547)K245 # TweakPsiPhi removed gap before (T0547)D564 # Closed gap before (T0547)T154 # TweakPhi removed gap before (T0547)K102 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPsiSubtree removed gap before (T0547)L337 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPsiSubtree removed gap before (T0547)P461 # TweakPsiPhi removed gap before (T0547)E361 # generation 9: best score out of 40: T0547.try1-opt2 214.78181 cost/residue, 995 clashes 0.14134 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 4 / 16 = 0.25000 0.00757 ## JiggleSubtree 0 8 2 / 30 = 0.06667 0.00635 ## JiggleSegment 1 1 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 13 = 0.00000 0.00000 ## OptSegment 0 0 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 8 / 21 = 0.38095 0.00377 ## TweakPhiSegment 1 21 7 / 33 = 0.21212 0.01448 ## TweakPsiSubtree 0 20 13 / 35 = 0.37143 0.00796 ## TweakPsiSegment 1 12 5 / 17 = 0.29412 0.00218 ## TweakPsiPhiSubtree 3 19 12 / 24 = 0.50000 0.00772 ## TweakPsiPhiSegment 1 14 4 / 20 = 0.20000 0.00190 ## TweakHbondSubtree 2 19 10 / 31 = 0.32258 0.01088 ## TweakHbondSegment 0 11 4 / 14 = 0.28571 0.00864 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 11 7 / 15 = 0.46667 0.00214 ## FixOmega 0 0 0 / 11 = 0.00000 0.00000 ## Backrub 8 13 2 / 20 = 0.10000 0.00103 ## BigBackrub 7 9 3 / 21 = 0.14286 0.00238 ## OneRotamer 0 36 11 / 99 = 0.11111 0.00546 ## ClashingRotamer 0 2 0 / 15 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 12 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 33 = 0.00000 0.00000 ## CloseGap 0 5 2 / 50 = 0.04000 0.02873 ## HealGap 0 5 1 / 38 = 0.02632 0.00400 ## MoveGap 0 0 0 / 12 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 36 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 34 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 20 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 78 = 0.00000 0.00000 ## CrossOver 0 0 0 / 15 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 18 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 18 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)Q448 # TweakPsiPhi removed gap before (T0547)N575 # TweakPhi removed gap before (T0547)I140 # TweakPhi removed gap before (T0547)L85 # TweakPhi removed gap before (T0547)G395 # TweakPhi removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)L596 # TweakPhi removed gap before (T0547)I489 # TweakPhi removed gap before (T0547)D564 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPhi removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)K171 # TweakPsiSubtree removed gap before (T0547)G524 # TweakPsiSubtree removed gap before (T0547)L266 # TweakPsiPhi removed gap before (T0547)Q588 # TweakPsiPhi removed gap before (T0547)N459 # TweakPsiSubtree removed gap before (T0547)I359 # TweakPsiPhi removed gap before (T0547)A276 # TweakPhi removed gap before (T0547)N328 # TweakPhi removed gap before (T0547)A374 # TweakPsiPhi removed gap before (T0547)E220 # TweakPhi removed gap before (T0547)Y366 # TweakPhi removed gap before (T0547)E220 # generation 10: best score out of 40: T0547.try1-opt2 214.56670 cost/residue, 996 clashes 0.13862 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 4 / 21 = 0.19048 0.00576 ## JiggleSubtree 0 9 3 / 32 = 0.09375 0.01307 ## JiggleSegment 1 1 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 0 17 12 / 28 = 0.42857 0.00903 ## TweakPhiSegment 2 25 10 / 39 = 0.25641 0.01527 ## TweakPsiSubtree 0 22 15 / 37 = 0.40541 0.01056 ## TweakPsiSegment 1 14 6 / 20 = 0.30000 0.00193 ## TweakPsiPhiSubtree 3 21 14 / 26 = 0.53846 0.00760 ## TweakPsiPhiSegment 1 15 5 / 23 = 0.21739 0.00270 ## TweakHbondSubtree 2 21 11 / 35 = 0.31429 0.00979 ## TweakHbondSegment 1 12 4 / 16 = 0.25000 0.00756 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 13 7 / 17 = 0.41176 0.00188 ## FixOmega 0 0 0 / 12 = 0.00000 0.00000 ## Backrub 8 13 2 / 21 = 0.09524 0.00098 ## BigBackrub 7 9 3 / 22 = 0.13636 0.00227 ## OneRotamer 0 40 13 / 112 = 0.11607 0.00539 ## ClashingRotamer 0 2 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 12 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 37 = 0.00000 0.00000 ## CloseGap 0 5 2 / 60 = 0.03333 0.02394 ## HealGap 0 5 1 / 44 = 0.02273 0.00345 ## MoveGap 0 0 0 / 14 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 38 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 38 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 21 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 87 = 0.00000 0.00000 ## CrossOver 0 0 0 / 18 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 18 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 18 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)I417 # TweakPsiSubtree removed gap before (T0547)L186 # TweakPsiPhi removed gap before (T0547)Q588 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPhi removed gap before (T0547)E361 # TweakPhi removed gap before (T0547)K219 # TweakPsiSubtree removed gap before (T0547)I388 # TweakPsiSubtree removed gap before (T0547)S445 # TweakPhi removed gap before (T0547)G272 # TweakPhi removed gap before (T0547)E470 # TweakPhi removed gap before (T0547)I157 # TweakPsiSubtree removed gap before (T0547)L497 # TweakPsiPhi removed gap before (T0547)E507 # Closed gap before (T0547)T154 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)E308 # TweakPhi removed gap before (T0547)K367 # TweakPhi removed gap before (T0547)I573 # TweakPsiPhi removed gap before (T0547)T207 # generation 11: best score out of 40: T0547.try1-opt2 214.36617 cost/residue, 984 clashes 0.14089 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 4 / 23 = 0.17391 0.00526 ## JiggleSubtree 0 11 6 / 38 = 0.15789 0.02403 ## JiggleSegment 1 1 0 / 22 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 20 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 17 = 0.00000 0.00000 ## TweakPhiSubtree 0 20 14 / 33 = 0.42424 0.00892 ## TweakPhiSegment 2 27 12 / 42 = 0.28571 0.01425 ## TweakPsiSubtree 0 27 19 / 46 = 0.41304 0.01052 ## TweakPsiSegment 1 15 6 / 21 = 0.28571 0.00183 ## TweakPsiPhiSubtree 4 23 16 / 29 = 0.55172 0.00694 ## TweakPsiPhiSegment 1 16 6 / 24 = 0.25000 0.00286 ## TweakHbondSubtree 2 24 12 / 38 = 0.31579 0.00913 ## TweakHbondSegment 1 14 4 / 20 = 0.20000 0.00605 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 13 7 / 17 = 0.41176 0.00188 ## FixOmega 0 0 0 / 13 = 0.00000 0.00000 ## Backrub 8 15 3 / 23 = 0.13043 0.00278 ## BigBackrub 7 10 3 / 23 = 0.13043 0.00217 ## OneRotamer 0 42 16 / 116 = 0.13793 0.00619 ## ClashingRotamer 0 2 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 3 1 0 / 14 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 37 = 0.00000 0.00000 ## CloseGap 0 7 3 / 68 = 0.04412 0.02164 ## HealGap 0 5 1 / 50 = 0.02000 0.00304 ## MoveGap 0 0 0 / 15 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 42 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 41 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 22 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 93 = 0.00000 0.00000 ## CrossOver 0 0 0 / 20 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 19 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 20 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)A263 # Closed gap before (T0547)T154 # TweakPsiSubtree removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)S539 # TweakPsiSubtree removed gap before (T0547)F14 # TweakPhi removed gap before (T0547)L206 # TweakPhi removed gap before (T0547)D168 # TweakPsiSubtree removed gap before (T0547)V522 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Y565 # TweakPsiPhi removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)I478 # TweakPsiPhi removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)I16 # TweakPhi removed gap before (T0547)T256 # TweakPhi removed gap before (T0547)E164 # TweakPsiSubtree removed gap before (T0547)S581 # TweakPsiPhi removed gap before (T0547)K76 # TweakPsiSubtree removed gap before (T0547)S236 # TweakPhi removed gap before (T0547)I15 # generation 12: best score out of 40: T0547.try1-opt2 214.34215 cost/residue, 982 clashes 0.14089 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 5 / 25 = 0.20000 0.00531 ## JiggleSubtree 0 12 7 / 43 = 0.16279 0.02354 ## JiggleSegment 1 1 0 / 23 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 20 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 15 / 36 = 0.41667 0.00829 ## TweakPhiSegment 3 31 15 / 48 = 0.31250 0.01469 ## TweakPsiSubtree 0 32 22 / 52 = 0.42308 0.01021 ## TweakPsiSegment 1 16 6 / 23 = 0.26087 0.00167 ## TweakPsiPhiSubtree 6 25 18 / 33 = 0.54545 0.00771 ## TweakPsiPhiSegment 1 16 6 / 24 = 0.25000 0.00286 ## TweakHbondSubtree 2 26 13 / 42 = 0.30952 0.00878 ## TweakHbondSegment 1 17 5 / 23 = 0.21739 0.00542 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 14 8 / 18 = 0.44444 0.00179 ## FixOmega 0 0 0 / 13 = 0.00000 0.00000 ## Backrub 9 16 5 / 25 = 0.20000 0.00378 ## BigBackrub 7 11 3 / 27 = 0.11111 0.00185 ## OneRotamer 0 45 17 / 122 = 0.13934 0.00607 ## ClashingRotamer 0 2 0 / 22 = 0.00000 0.00000 ## ClusteredRotamer 3 1 0 / 14 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 40 = 0.00000 0.00000 ## CloseGap 0 7 3 / 77 = 0.03896 0.01911 ## HealGap 0 5 1 / 58 = 0.01724 0.00262 ## MoveGap 0 0 0 / 15 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 43 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 45 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 23 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 99 = 0.00000 0.00000 ## CrossOver 0 0 0 / 21 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 19 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 22 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)K543 # TweakPhi removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)Y255 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)E595 # TweakPsiPhi removed gap before (T0547)I238 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPhi removed gap before (T0547)F66 # TweakPsiSubtree removed gap before (T0547)G19 # TweakPsiPhi removed gap before (T0547)I609 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)Y290 # TweakPsiSubtree removed gap before (T0547)L139 # TweakPsiPhi removed gap before (T0547)R259 # TweakPhi removed gap before (T0547)R259 # TweakPsiSubtree removed gap before (T0547)L234 # TweakPsiPhi removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)L557 # TweakPsiPhi removed gap before (T0547)N221 # TweakPsiPhi removed gap before (T0547)D586 # TweakPsiSubtree removed gap before (T0547)G544 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N216 # TweakPhi removed gap before (T0547)K20 # TweakPhi removed gap before (T0547)N96 # TweakPsiPhi removed gap before (T0547)N443 # TweakPsiPhi removed gap before (T0547)E250 # TweakPsiPhi removed gap before (T0547)A518 # TweakPhi removed gap before (T0547)I537 # TweakPsiSubtree removed gap before (T0547)K219 # TweakPsiPhi removed gap before (T0547)V35 # generation 13: best score out of 40: T0547.try1-opt2 214.27632 cost/residue, 978 clashes 0.14108 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 5 / 26 = 0.19231 0.00510 ## JiggleSubtree 0 17 9 / 52 = 0.17308 0.02260 ## JiggleSegment 1 1 0 / 26 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 24 16 / 38 = 0.42105 0.00829 ## TweakPhiSegment 3 35 17 / 55 = 0.30909 0.01284 ## TweakPsiSubtree 0 35 25 / 59 = 0.42373 0.01228 ## TweakPsiSegment 1 20 9 / 28 = 0.32143 0.00606 ## TweakPsiPhiSubtree 7 29 21 / 42 = 0.50000 0.00727 ## TweakPsiPhiSegment 1 18 6 / 26 = 0.23077 0.00264 ## TweakHbondSubtree 2 26 14 / 44 = 0.31818 0.00877 ## TweakHbondSegment 1 17 5 / 23 = 0.21739 0.00542 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 14 8 / 18 = 0.44444 0.00179 ## FixOmega 0 0 0 / 14 = 0.00000 0.00000 ## Backrub 10 21 6 / 30 = 0.20000 0.00352 ## BigBackrub 8 11 3 / 27 = 0.11111 0.00185 ## OneRotamer 0 47 18 / 126 = 0.14286 0.00591 ## ClashingRotamer 0 2 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 3 1 0 / 15 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 41 = 0.00000 0.00000 ## CloseGap 0 7 3 / 80 = 0.03750 0.01840 ## HealGap 0 5 1 / 65 = 0.01538 0.00234 ## MoveGap 0 0 0 / 15 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 48 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 49 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 24 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 111 = 0.00000 0.00000 ## CrossOver 0 0 0 / 23 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 20 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 22 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)R577 # TweakPsiSubtree removed gap before (T0547)R183 # TweakPhi removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)I55 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPhi removed gap before (T0547)R439 # TweakPhi removed gap before (T0547)K367 # TweakPsiPhi removed gap before (T0547)A147 # TweakPsiPhi removed gap before (T0547)E162 # TweakPsiSubtree removed gap before (T0547)E435 # TweakPsiSubtree removed gap before (T0547)E343 # TweakPsiSubtree removed gap before (T0547)I570 # TweakPhi removed gap before (T0547)D562 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPhi removed gap before (T0547)Q554 # TweakPhi removed gap before (T0547)F66 # TweakPhi removed gap before (T0547)I489 # TweakPsiPhi removed gap before (T0547)I359 # TweakPsiSubtree removed gap before (T0547)D564 # TweakPsiPhi removed gap before (T0547)D33 # TweakPsiSubtree removed gap before (T0547)F318 # TweakPsiPhi removed gap before (T0547)G159 # TweakPsiSubtree removed gap before (T0547)M120 # Closed gap before (T0547)Y344 # TweakPsiPhi removed gap before (T0547)L385 # generation 14: best score out of 40: T0547.try1-opt2 214.25288 cost/residue, 983 clashes 0.14104 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 6 / 28 = 0.21429 0.00492 ## JiggleSubtree 0 17 9 / 56 = 0.16071 0.02099 ## JiggleSegment 1 1 0 / 26 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 20 = 0.00000 0.00000 ## TweakPhiSubtree 0 28 17 / 44 = 0.38636 0.00819 ## TweakPhiSegment 3 36 17 / 58 = 0.29310 0.01217 ## TweakPsiSubtree 0 37 27 / 63 = 0.42857 0.01509 ## TweakPsiSegment 1 22 9 / 36 = 0.25000 0.00471 ## TweakPsiPhiSubtree 7 35 25 / 48 = 0.52083 0.00835 ## TweakPsiPhiSegment 1 18 6 / 26 = 0.23077 0.00264 ## TweakHbondSubtree 2 28 15 / 49 = 0.30612 0.00807 ## TweakHbondSegment 1 17 5 / 25 = 0.20000 0.00498 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 14 8 / 19 = 0.42105 0.00170 ## FixOmega 0 0 0 / 16 = 0.00000 0.00000 ## Backrub 10 23 7 / 33 = 0.21212 0.00357 ## BigBackrub 9 11 3 / 29 = 0.10345 0.00172 ## OneRotamer 0 50 18 / 134 = 0.13433 0.00556 ## ClashingRotamer 0 2 0 / 24 = 0.00000 0.00000 ## ClusteredRotamer 3 1 0 / 16 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 42 = 0.00000 0.00000 ## CloseGap 0 8 4 / 86 = 0.04651 0.01723 ## HealGap 0 5 1 / 66 = 0.01515 0.00230 ## MoveGap 0 0 0 / 16 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 51 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 29 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 55 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 28 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 117 = 0.00000 0.00000 ## CrossOver 0 0 0 / 23 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 21 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 22 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G322 # TweakPsiSubtree removed gap before (T0547)I145 # TweakPhi removed gap before (T0547)L606 # TweakPsiPhi removed gap before (T0547)L47 # TweakPsiPhi removed gap before (T0547)G544 # TweakPhi removed gap before (T0547)A170 # TweakPhi removed gap before (T0547)G181 # TweakPsiSubtree removed gap before (T0547)E507 # TweakPsiPhi removed gap before (T0547)N459 # TweakPsiPhi removed gap before (T0547)Q226 # TweakPsiPhi removed gap before (T0547)K20 # TweakPhi removed gap before (T0547)N580 # TweakPsiPhi removed gap before (T0547)S321 # TweakPsiSubtree removed gap before (T0547)I359 # TweakPhi removed gap before (T0547)L48 # TweakPsiPhi removed gap before (T0547)L54 # TweakPhi removed gap before (T0547)L418 # TweakPhi removed gap before (T0547)K283 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPsiPhi removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)E435 # TweakPhi removed gap before (T0547)I62 # TweakPsiPhi removed gap before (T0547)V436 # TweakPsiSubtree removed gap before (T0547)H410 # generation 15: best score out of 40: T0547.try1-opt2 214.10677 cost/residue, 992 clashes 0.13789 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 6 / 29 = 0.20690 0.00475 ## JiggleSubtree 0 17 9 / 62 = 0.14516 0.01896 ## JiggleSegment 1 1 0 / 27 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 26 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 20 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 20 = 0.00000 0.00000 ## TweakPhiSubtree 0 33 20 / 51 = 0.39216 0.00772 ## TweakPhiSegment 3 37 18 / 63 = 0.28571 0.01133 ## TweakPsiSubtree 0 38 27 / 67 = 0.40299 0.01419 ## TweakPsiSegment 1 22 9 / 37 = 0.24324 0.00458 ## TweakPsiPhiSubtree 7 38 26 / 53 = 0.49057 0.00985 ## TweakPsiPhiSegment 1 22 8 / 30 = 0.26667 0.00278 ## TweakHbondSubtree 2 30 17 / 55 = 0.30909 0.00742 ## TweakHbondSegment 1 18 6 / 30 = 0.20000 0.00445 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 14 8 / 20 = 0.40000 0.00161 ## FixOmega 0 0 0 / 20 = 0.00000 0.00000 ## Backrub 11 26 8 / 36 = 0.22222 0.00343 ## BigBackrub 9 12 3 / 33 = 0.09091 0.00152 ## OneRotamer 0 51 18 / 139 = 0.12950 0.00536 ## ClashingRotamer 0 2 0 / 26 = 0.00000 0.00000 ## ClusteredRotamer 3 1 0 / 16 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 45 = 0.00000 0.00000 ## CloseGap 0 10 5 / 96 = 0.05208 0.01696 ## HealGap 0 6 2 / 68 = 0.02941 0.00226 ## MoveGap 0 0 0 / 17 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 53 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 56 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 28 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 125 = 0.00000 0.00000 ## CrossOver 0 0 0 / 24 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 22 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 22 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)L557 # TweakPhi removed gap before (T0547)K286 # TweakPsiSubtree removed gap before (T0547)G455 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)G190 # TweakPsiPhi removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)L118 # TweakPsiPhi removed gap before (T0547)N289 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPhi removed gap before (T0547)N24 # TweakPhi removed gap before (T0547)Q433 # TweakPsiPhi removed gap before (T0547)S485 # TweakPsiPhi removed gap before (T0547)H527 # TweakPhi removed gap before (T0547)A170 # TweakPhi removed gap before (T0547)L499 # TweakPsiPhi removed gap before (T0547)L362 # TweakPhi removed gap before (T0547)A427 # TweakPsiSubtree removed gap before (T0547)I537 # TweakPhi removed gap before (T0547)T413 # TweakPsiSubtree removed gap before (T0547)V397 # TweakPhi removed gap before (T0547)L511 # TweakPsiPhi removed gap before (T0547)K414 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPhi removed gap before (T0547)E576 # TweakPhi removed gap before (T0547)L394 # TweakPsiPhi removed gap before (T0547)G64 # TweakPhi removed gap before (T0547)K86 # TweakPsiSubtree removed gap before (T0547)E162 # TweakPsiPhi removed gap before (T0547)D168 # TweakPsiPhi removed gap before (T0547)S475 # generation 16: best score out of 40: T0547.try1-opt2 214.04436 cost/residue, 992 clashes 0.13769 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 7 / 31 = 0.22581 0.00558 ## JiggleSubtree 0 17 9 / 69 = 0.13043 0.01704 ## JiggleSegment 1 1 0 / 27 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 26 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 20 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 21 = 0.00000 0.00000 ## TweakPhiSubtree 1 36 23 / 59 = 0.38983 0.00789 ## TweakPhiSegment 3 38 18 / 68 = 0.26471 0.01050 ## TweakPsiSubtree 0 40 30 / 71 = 0.42254 0.01493 ## TweakPsiSegment 1 25 11 / 40 = 0.27500 0.01042 ## TweakPsiPhiSubtree 7 43 31 / 60 = 0.51667 0.00968 ## TweakPsiPhiSegment 1 24 10 / 35 = 0.28571 0.00294 ## TweakHbondSubtree 2 31 17 / 58 = 0.29310 0.00703 ## TweakHbondSegment 1 20 6 / 34 = 0.17647 0.00393 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 14 8 / 20 = 0.40000 0.00161 ## FixOmega 0 0 0 / 22 = 0.00000 0.00000 ## Backrub 12 30 9 / 41 = 0.21951 0.00329 ## BigBackrub 9 12 3 / 33 = 0.09091 0.00152 ## OneRotamer 0 53 20 / 148 = 0.13514 0.00557 ## ClashingRotamer 0 2 0 / 27 = 0.00000 0.00000 ## ClusteredRotamer 4 1 0 / 17 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 48 = 0.00000 0.00000 ## CloseGap 0 10 5 / 103 = 0.04854 0.01581 ## HealGap 0 6 2 / 71 = 0.02817 0.00217 ## MoveGap 0 0 0 / 18 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 54 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 57 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 28 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 133 = 0.00000 0.00000 ## CrossOver 0 0 0 / 26 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 25 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 23 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)K283 # TweakPsiPhi removed gap before (T0547)N13 # TweakPsiSubtree removed gap before (T0547)S403 # TweakPsiSubtree removed gap before (T0547)Y255 # TweakPhi removed gap before (T0547)H591 # TweakPsiSubtree removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)I319 # TweakPhi removed gap before (T0547)Q237 # TweakPhi removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)F324 # TweakPsiSubtree removed gap before (T0547)Y366 # TweakPsiSubtree removed gap before (T0547)E12 # TweakPsiSubtree removed gap before (T0547)L339 # TweakPsiPhi removed gap before (T0547)A307 # TweakPsiPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)M2 # TweakPsiPhi removed gap before (T0547)H568 # TweakPhi removed gap before (T0547)L224 # TweakPsiSubtree removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)I129 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPhi removed gap before (T0547)A345 # TweakPsiPhi removed gap before (T0547)A427 # TweakPsiSubtree removed gap before (T0547)L275 # TweakPsiPhi removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)H532 # TweakPsiSubtree removed gap before (T0547)E72 # TweakPsiPhi removed gap before (T0547)N67 # TweakPsiPhi removed gap before (T0547)K44 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPhi removed gap before (T0547)A146 # TweakPsiSubtree removed gap before (T0547)H532 # TweakPsiPhi removed gap before (T0547)V397 # generation 17: best score out of 40: T0547.try1-opt2 213.89252 cost/residue, 970 clashes 0.14101 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 7 / 31 = 0.22581 0.00558 ## JiggleSubtree 0 17 9 / 75 = 0.12000 0.01567 ## JiggleSegment 1 1 0 / 28 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 28 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 1 38 24 / 63 = 0.38095 0.00769 ## TweakPhiSegment 3 40 20 / 70 = 0.28571 0.01068 ## TweakPsiSubtree 0 47 35 / 84 = 0.41667 0.01596 ## TweakPsiSegment 1 27 12 / 47 = 0.25532 0.01128 ## TweakPsiPhiSubtree 7 47 31 / 66 = 0.46970 0.00880 ## TweakPsiPhiSegment 1 26 10 / 40 = 0.25000 0.00257 ## TweakHbondSubtree 2 36 20 / 67 = 0.29851 0.00822 ## TweakHbondSegment 2 20 6 / 34 = 0.17647 0.00393 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 14 8 / 21 = 0.38095 0.00154 ## FixOmega 0 0 0 / 25 = 0.00000 0.00000 ## Backrub 12 30 9 / 42 = 0.21429 0.00321 ## BigBackrub 9 12 3 / 35 = 0.08571 0.00143 ## OneRotamer 0 55 22 / 153 = 0.14379 0.00792 ## ClashingRotamer 1 2 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 4 1 0 / 19 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 48 = 0.00000 0.00000 ## CloseGap 0 11 5 / 108 = 0.04630 0.01507 ## HealGap 0 6 2 / 74 = 0.02703 0.00208 ## MoveGap 0 0 0 / 20 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 57 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 59 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 28 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 139 = 0.00000 0.00000 ## CrossOver 0 0 0 / 27 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 26 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 23 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)M463 # TweakPsiSubtree removed gap before (T0547)I167 # TweakPsiSubtree removed gap before (T0547)I350 # TweakPhi removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)I31 # TweakPsiSubtree removed gap before (T0547)Q400 # TweakPsiSubtree removed gap before (T0547)Q56 # TweakPhi removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)K543 # TweakPsiSubtree removed gap before (T0547)G192 # TweakPhi removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)K506 # TweakPsiPhi removed gap before (T0547)V87 # TweakPhi removed gap before (T0547)D401 # TweakPhi removed gap before (T0547)S539 # TweakPsiSubtree removed gap before (T0547)E240 # TweakPsiSubtree removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)G126 # TweakPsiPhi removed gap before (T0547)V547 # TweakPsiSubtree removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)Q520 # TweakPsiPhi removed gap before (T0547)F444 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E257 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPhi removed gap before (T0547)K260 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F144 # TweakPsiSubtree removed gap before (T0547)Y519 # TweakPhi removed gap before (T0547)A518 # TweakPsiSubtree removed gap before (T0547)N508 # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPsiSubtree removed gap before (T0547)L606 # generation 18: best score out of 40: T0547.try1-opt2 213.79251 cost/residue, 989 clashes 0.13757 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 8 / 36 = 0.22222 0.00503 ## JiggleSubtree 0 18 10 / 83 = 0.12048 0.01419 ## JiggleSegment 1 2 1 / 30 = 0.03333 0.00048 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 29 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 1 41 25 / 69 = 0.36232 0.00715 ## TweakPhiSegment 3 43 23 / 74 = 0.31081 0.01113 ## TweakPsiSubtree 0 50 38 / 96 = 0.39583 0.01483 ## TweakPsiSegment 1 32 16 / 55 = 0.29091 0.01834 ## TweakPsiPhiSubtree 7 47 31 / 67 = 0.46269 0.00866 ## TweakPsiPhiSegment 1 27 11 / 42 = 0.26190 0.00368 ## TweakHbondSubtree 2 37 20 / 70 = 0.28571 0.00787 ## TweakHbondSegment 2 21 8 / 38 = 0.21053 0.00420 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 9 / 23 = 0.39130 0.00165 ## FixOmega 0 0 0 / 25 = 0.00000 0.00000 ## Backrub 13 30 9 / 44 = 0.20455 0.00306 ## BigBackrub 10 12 3 / 35 = 0.08571 0.00143 ## OneRotamer 0 55 22 / 161 = 0.13665 0.00752 ## ClashingRotamer 1 2 0 / 29 = 0.00000 0.00000 ## ClusteredRotamer 4 1 0 / 19 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 54 = 0.00000 0.00000 ## CloseGap 0 14 6 / 115 = 0.05217 0.01419 ## HealGap 0 6 2 / 77 = 0.02597 0.00200 ## MoveGap 0 0 0 / 20 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 57 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 62 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 32 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 140 = 0.00000 0.00000 ## CrossOver 0 0 0 / 28 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 26 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 25 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)K264 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)I62 # TweakPsiSubtree removed gap before (T0547)A170 # TweakPhi removed gap before (T0547)V331 # TweakPsiSubtree removed gap before (T0547)H233 # TweakPsiPhi removed gap before (T0547)E278 # TweakPhi removed gap before (T0547)N404 # TweakPsiPhi removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPsiPhi removed gap before (T0547)L394 # TweakPsiSubtree removed gap before (T0547)I333 # TweakPsiSubtree removed gap before (T0547)D401 # TweakPsiPhi removed gap before (T0547)G262 # TweakPsiPhi removed gap before (T0547)F301 # TweakPhi removed gap before (T0547)I212 # TweakPhi removed gap before (T0547)I306 # TweakPsiSubtree removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)W194 # TweakPsiPhi removed gap before (T0547)F66 # TweakPhi removed gap before (T0547)G107 # TweakPsiSubtree removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)T228 # TweakPsiPhi removed gap before (T0547)K246 # TweakPhi removed gap before (T0547)E148 # TweakPsiPhi removed gap before (T0547)V191 # TweakPsiSubtree removed gap before (T0547)L560 # TweakPsiSubtree removed gap before (T0547)S112 # TweakPsiPhi removed gap before (T0547)S381 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPsiPhi removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)L223 # TweakPsiSubtree removed gap before (T0547)L358 # TweakPsiSubtree removed gap before (T0547)I269 # TweakPsiSubtree removed gap before (T0547)Q400 # TweakPsiSubtree removed gap before (T0547)R259 # TweakPhi removed gap before (T0547)F144 # generation 19: best score out of 40: T0547.try1-opt2 213.76027 cost/residue, 989 clashes 0.13756 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 8 / 36 = 0.22222 0.00503 ## JiggleSubtree 0 18 10 / 87 = 0.11494 0.01354 ## JiggleSegment 1 2 1 / 31 = 0.03226 0.00046 ## OptSubtree 0 0 0 / 37 = 0.00000 0.00000 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 29 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 27 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 26 = 0.00000 0.00000 ## TweakPhiSubtree 1 43 27 / 74 = 0.36486 0.00791 ## TweakPhiSegment 4 47 24 / 79 = 0.30380 0.01083 ## TweakPsiSubtree 0 51 39 / 102 = 0.38235 0.01420 ## TweakPsiSegment 1 36 18 / 65 = 0.27692 0.01627 ## TweakPsiPhiSubtree 8 51 33 / 72 = 0.45833 0.00889 ## TweakPsiPhiSegment 3 31 11 / 48 = 0.22917 0.00322 ## TweakHbondSubtree 2 37 20 / 73 = 0.27397 0.00754 ## TweakHbondSegment 2 23 9 / 41 = 0.21951 0.00399 ## TweakMultimer 27 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 16 10 / 27 = 0.37037 0.00142 ## FixOmega 0 0 0 / 25 = 0.00000 0.00000 ## Backrub 13 30 9 / 45 = 0.20000 0.00299 ## BigBackrub 11 12 3 / 36 = 0.08333 0.00139 ## OneRotamer 0 59 22 / 169 = 0.13018 0.00717 ## ClashingRotamer 1 2 0 / 31 = 0.00000 0.00000 ## ClusteredRotamer 4 1 0 / 21 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 56 = 0.00000 0.00000 ## CloseGap 0 15 6 / 120 = 0.05000 0.01360 ## HealGap 0 6 2 / 79 = 0.02532 0.00195 ## MoveGap 0 0 0 / 21 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 59 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 65 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 32 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 145 = 0.00000 0.00000 ## CrossOver 0 0 0 / 29 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 28 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 26 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPsiSubtree removed gap before (T0547)K113 # TweakPhi removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)V191 # TweakPsiSubtree removed gap before (T0547)P461 # TweakPsiPhi removed gap before (T0547)I241 # TweakPhi removed gap before (T0547)L375 # TweakPsiSubtree removed gap before (T0547)E338 # TweakPsiSubtree removed gap before (T0547)K95 # TweakPsiSubtree removed gap before (T0547)Y279 # TweakPhi removed gap before (T0547)D452 # TweakPsiPhi removed gap before (T0547)L244 # TweakPsiPhi removed gap before (T0547)N221 # TweakPsiSubtree removed gap before (T0547)L497 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)F498 # TweakPhi removed gap before (T0547)I302 # TweakPsiSubtree removed gap before (T0547)D572 # TweakPsiPhi removed gap before (T0547)L244 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)D494 # TweakPhi removed gap before (T0547)Q342 # TweakPsiSubtree removed gap before (T0547)I16 # TweakPsiSubtree removed gap before (T0547)D393 # TweakPsiPhi removed gap before (T0547)M2 # TweakPsiSubtree removed gap before (T0547)H53 # TweakPhi removed gap before (T0547)F444 # TweakPhi removed gap before (T0547)L418 # TweakPsiSubtree removed gap before (T0547)Y63 # TweakPsiPhi removed gap before (T0547)D501 # TweakPsiSubtree removed gap before (T0547)G205 # TweakPhi removed gap before (T0547)G273 # generation 20: best score out of 40: T0547.try1-opt2 213.66995 cost/residue, 960 clashes 0.14061 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 8 / 37 = 0.21622 0.00489 ## JiggleSubtree 0 18 10 / 91 = 0.10989 0.01294 ## JiggleSegment 1 3 1 / 32 = 0.03125 0.00045 ## OptSubtree 0 0 0 / 39 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 30 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 28 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 28 = 0.00000 0.00000 ## TweakPhiSubtree 1 43 29 / 78 = 0.37179 0.00768 ## TweakPhiSegment 6 52 26 / 85 = 0.30588 0.01359 ## TweakPsiSubtree 0 52 39 / 105 = 0.37143 0.01379 ## TweakPsiSegment 1 45 25 / 80 = 0.31250 0.01634 ## TweakPsiPhiSubtree 8 55 37 / 79 = 0.46835 0.00949 ## TweakPsiPhiSegment 4 31 11 / 48 = 0.22917 0.00322 ## TweakHbondSubtree 2 38 21 / 79 = 0.26582 0.00701 ## TweakHbondSegment 2 25 9 / 45 = 0.20000 0.00363 ## TweakMultimer 27 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 17 11 / 30 = 0.36667 0.00129 ## FixOmega 0 0 0 / 26 = 0.00000 0.00000 ## Backrub 14 30 9 / 46 = 0.19565 0.00293 ## BigBackrub 11 12 3 / 36 = 0.08333 0.00139 ## OneRotamer 0 61 23 / 177 = 0.12994 0.00708 ## ClashingRotamer 1 2 0 / 33 = 0.00000 0.00000 ## ClusteredRotamer 5 1 0 / 21 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 57 = 0.00000 0.00000 ## CloseGap 0 15 6 / 124 = 0.04839 0.01316 ## HealGap 0 6 2 / 82 = 0.02439 0.00188 ## MoveGap 0 0 0 / 23 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 62 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 69 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 34 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 148 = 0.00000 0.00000 ## CrossOver 0 0 0 / 32 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 28 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 27 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)I269 # TweakPhi removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)L54 # TweakPsiSubtree removed gap before (T0547)A330 # TweakPsiSubtree removed gap before (T0547)F392 # TweakPhi removed gap before (T0547)A518 # TweakPhi removed gap before (T0547)Q226 # TweakPsiPhi removed gap before (T0547)I570 # TweakPsiSubtree removed gap before (T0547)N575 # TweakPhi removed gap before (T0547)E225 # TweakPsiSubtree removed gap before (T0547)F318 # TweakPhi removed gap before (T0547)T531 # TweakPsiSubtree removed gap before (T0547)G199 # TweakPsiSubtree removed gap before (T0547)G594 # TweakPsiSubtree removed gap before (T0547)S321 # TweakPhi removed gap before (T0547)Y295 # TweakPsiSubtree removed gap before (T0547)S445 # TweakPsiPhi removed gap before (T0547)V35 # TweakPsiPhi removed gap before (T0547)F134 # TweakPhi removed gap before (T0547)I333 # TweakPsiPhi removed gap before (T0547)T413 # TweakPsiSubtree removed gap before (T0547)Y440 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)D466 # TweakPsiSubtree removed gap before (T0547)G322 # TweakPsiPhi removed gap before (T0547)I432 # TweakPhi removed gap before (T0547)Y545 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)E552 # TweakPsiPhi removed gap before (T0547)D168 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L420 # TweakPsiSubtree removed gap before (T0547)N355 # TweakPhi removed gap before (T0547)N284 # TweakPsiSubtree removed gap before (T0547)L244 # TweakPsiPhi removed gap before (T0547)K357 # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPsiSubtree removed gap before (T0547)I537 # generation 21: best score out of 40: T0547.try1-opt2 213.65622 cost/residue, 990 clashes 0.13704 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 8 / 40 = 0.20000 0.00453 ## JiggleSubtree 0 18 10 / 96 = 0.10417 0.01227 ## JiggleSegment 1 4 2 / 34 = 0.05882 0.00273 ## OptSubtree 0 0 0 / 40 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 30 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 28 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 28 = 0.00000 0.00000 ## TweakPhiSubtree 1 46 29 / 83 = 0.34940 0.00722 ## TweakPhiSegment 6 56 29 / 91 = 0.31868 0.01324 ## TweakPsiSubtree 0 54 42 / 112 = 0.37500 0.01394 ## TweakPsiSegment 1 50 28 / 94 = 0.29787 0.01445 ## TweakPsiPhiSubtree 8 60 41 / 86 = 0.47674 0.00952 ## TweakPsiPhiSegment 4 32 12 / 50 = 0.24000 0.00322 ## TweakHbondSubtree 2 39 21 / 83 = 0.25301 0.00667 ## TweakHbondSegment 2 25 9 / 45 = 0.20000 0.00363 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 19 13 / 35 = 0.37143 0.00117 ## FixOmega 0 0 0 / 28 = 0.00000 0.00000 ## Backrub 16 31 9 / 49 = 0.18367 0.00275 ## BigBackrub 11 12 3 / 36 = 0.08333 0.00139 ## OneRotamer 0 63 24 / 186 = 0.12903 0.00692 ## ClashingRotamer 1 2 0 / 33 = 0.00000 0.00000 ## ClusteredRotamer 5 1 0 / 22 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 59 = 0.00000 0.00000 ## CloseGap 0 15 6 / 125 = 0.04800 0.01306 ## HealGap 0 6 2 / 85 = 0.02353 0.00181 ## MoveGap 0 0 0 / 23 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 64 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 72 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 35 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 152 = 0.00000 0.00000 ## CrossOver 0 0 0 / 33 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 31 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 30 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)A30 # TweakPsiPhi removed gap before (T0547)Q588 # TweakPsiSubtree removed gap before (T0547)S188 # TweakPsiSubtree removed gap before (T0547)S475 # TweakPhi removed gap before (T0547)K99 # TweakPsiSubtree removed gap before (T0547)L351 # TweakPsiSubtree removed gap before (T0547)E361 # TweakPsiSubtree removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)S475 # TweakPsiSubtree removed gap before (T0547)Y279 # TweakPsiPhi removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)I609 # TweakPhi removed gap before (T0547)D40 # TweakPsiPhi removed gap before (T0547)S197 # TweakPsiSubtree removed gap before (T0547)E346 # TweakPsiSubtree removed gap before (T0547)I31 # TweakPsiSubtree removed gap before (T0547)S202 # TweakPsiSubtree removed gap before (T0547)T209 # TweakPsiSubtree removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)D380 # TweakPsiSubtree removed gap before (T0547)E338 # TweakPhi removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)L234 # TweakPsiPhi removed gap before (T0547)D602 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPsiPhi removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)L574 # TweakPhi removed gap before (T0547)G74 # TweakPsiPhi removed gap before (T0547)K267 # TweakPsiPhi removed gap before (T0547)L515 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPsiSubtree removed gap before (T0547)L375 # TweakPsiPhi removed gap before (T0547)Y366 # TweakPhi removed gap before (T0547)E250 # generation 22: best score out of 40: T0547.try1-opt2 213.63307 cost/residue, 961 clashes 0.14031 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 8 / 45 = 0.17778 0.00402 ## JiggleSubtree 0 18 10 / 102 = 0.09804 0.01155 ## JiggleSegment 1 4 2 / 36 = 0.05556 0.00258 ## OptSubtree 0 0 0 / 43 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 32 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 29 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 29 = 0.00000 0.00000 ## TweakPhiSubtree 1 47 29 / 86 = 0.33721 0.00696 ## TweakPhiSegment 6 61 30 / 97 = 0.30928 0.01291 ## TweakPsiSubtree 0 57 44 / 122 = 0.36066 0.01329 ## TweakPsiSegment 1 53 30 / 103 = 0.29126 0.01372 ## TweakPsiPhiSubtree 8 64 41 / 90 = 0.45556 0.00910 ## TweakPsiPhiSegment 4 34 12 / 54 = 0.22222 0.00298 ## TweakHbondSubtree 2 39 21 / 83 = 0.25301 0.00667 ## TweakHbondSegment 2 25 9 / 47 = 0.19149 0.00348 ## TweakMultimer 30 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 21 15 / 37 = 0.40541 0.00132 ## FixOmega 0 0 0 / 28 = 0.00000 0.00000 ## Backrub 16 33 9 / 53 = 0.16981 0.00254 ## BigBackrub 11 12 3 / 37 = 0.08108 0.00135 ## OneRotamer 0 63 24 / 193 = 0.12435 0.00667 ## ClashingRotamer 1 2 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 5 1 0 / 22 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 63 = 0.00000 0.00000 ## CloseGap 0 16 6 / 129 = 0.04651 0.01265 ## HealGap 0 6 2 / 88 = 0.02273 0.00175 ## MoveGap 0 0 0 / 23 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 67 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 74 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 36 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 156 = 0.00000 0.00000 ## CrossOver 0 0 0 / 33 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 31 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 32 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)F510 # TweakPsiPhi removed gap before (T0547)L563 # TweakPsiPhi removed gap before (T0547)I537 # TweakPhi removed gap before (T0547)T482 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPhi removed gap before (T0547)F513 # TweakPhi removed gap before (T0547)M463 # TweakPsiSubtree removed gap before (T0547)H527 # TweakPhi removed gap before (T0547)I59 # TweakPsiSubtree removed gap before (T0547)K36 # TweakPsiPhi removed gap before (T0547)I388 # TweakPsiSubtree removed gap before (T0547)G101 # TweakPsiSubtree removed gap before (T0547)G143 # TweakPsiPhi removed gap before (T0547)V547 # TweakPhi removed gap before (T0547)E213 # TweakPsiSubtree removed gap before (T0547)A146 # TweakPsiSubtree removed gap before (T0547)P451 # TweakPsiPhi removed gap before (T0547)I369 # TweakPsiPhi removed gap before (T0547)L234 # TweakPhi removed gap before (T0547)H53 # TweakPsiPhi removed gap before (T0547)D428 # TweakPsiSubtree removed gap before (T0547)H187 # TweakPsiPhi removed gap before (T0547)E278 # TweakPhi removed gap before (T0547)Y75 # TweakPsiPhi removed gap before (T0547)R39 # TweakPhi removed gap before (T0547)D136 # TweakPsiSubtree removed gap before (T0547)K493 # TweakPsiPhi removed gap before (T0547)K95 # TweakPsiSubtree removed gap before (T0547)L600 # TweakPhi removed gap before (T0547)D401 # TweakPsiPhi removed gap before (T0547)E546 # TweakPsiSubtree removed gap before (T0547)G252 # generation 23: best score out of 40: T0547.try1-opt2 213.51045 cost/residue, 957 clashes 0.14020 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 8 / 45 = 0.17778 0.00402 ## JiggleSubtree 0 19 11 / 104 = 0.10577 0.01230 ## JiggleSegment 1 4 2 / 43 = 0.04651 0.00216 ## OptSubtree 0 0 0 / 45 = 0.00000 0.00000 ## OptSegment 0 0 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 32 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 30 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 31 = 0.00000 0.00000 ## TweakPhiSubtree 1 49 31 / 91 = 0.34066 0.00666 ## TweakPhiSegment 6 62 32 / 101 = 0.31683 0.01251 ## TweakPsiSubtree 0 60 47 / 130 = 0.36154 0.01287 ## TweakPsiSegment 1 56 34 / 110 = 0.30909 0.01407 ## TweakPsiPhiSubtree 9 68 43 / 99 = 0.43434 0.00886 ## TweakPsiPhiSegment 4 35 13 / 56 = 0.23214 0.00369 ## TweakHbondSubtree 2 40 22 / 86 = 0.25581 0.00652 ## TweakHbondSegment 2 25 9 / 48 = 0.18750 0.00341 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 23 16 / 40 = 0.40000 0.00125 ## FixOmega 0 0 0 / 29 = 0.00000 0.00000 ## Backrub 16 34 9 / 54 = 0.16667 0.00250 ## BigBackrub 11 12 3 / 38 = 0.07895 0.00132 ## OneRotamer 0 68 27 / 209 = 0.12919 0.00700 ## ClashingRotamer 1 2 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 5 1 0 / 26 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 65 = 0.00000 0.00000 ## CloseGap 0 16 6 / 130 = 0.04615 0.01256 ## HealGap 0 6 2 / 89 = 0.02247 0.00173 ## MoveGap 0 0 0 / 26 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 68 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 74 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 36 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 161 = 0.00000 0.00000 ## CrossOver 0 0 0 / 34 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 32 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 35 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)V300 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPsiSubtree removed gap before (T0547)L49 # TweakPhi removed gap before (T0547)G143 # TweakPsiSubtree removed gap before (T0547)I302 # TweakPsiSubtree removed gap before (T0547)G181 # TweakPsiSubtree removed gap before (T0547)L441 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)S581 # TweakPsiSubtree removed gap before (T0547)N124 # TweakPsiSubtree removed gap before (T0547)D7 # TweakPhi removed gap before (T0547)L118 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPhi removed gap before (T0547)Q56 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPhi removed gap before (T0547)S287 # TweakPhi removed gap before (T0547)Y279 # TweakPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)L378 # TweakPhi removed gap before (T0547)V522 # TweakPhi removed gap before (T0547)E37 # TweakPsiPhi removed gap before (T0547)K17 # TweakPsiSubtree removed gap before (T0547)E308 # TweakPhi removed gap before (T0547)L155 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPsiPhi removed gap before (T0547)A296 # TweakPhi removed gap before (T0547)G192 # TweakPhi removed gap before (T0547)S236 # TweakPsiSubtree removed gap before (T0547)K493 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPhi removed gap before (T0547)Q309 # TweakPhi removed gap before (T0547)H151 # TweakPhi removed gap before (T0547)G192 # TweakPsiSubtree removed gap before (T0547)K304 # TweakPhi removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)A345 # generation 24: best score out of 40: T0547.try1-opt2 213.51045 cost/residue, 957 clashes 0.14020 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 17 9 / 47 = 0.19149 0.00457 ## JiggleSubtree 0 21 12 / 109 = 0.11009 0.01191 ## JiggleSegment 1 5 3 / 47 = 0.06383 0.00313 ## OptSubtree 0 0 0 / 45 = 0.00000 0.00000 ## OptSegment 0 0 0 / 29 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 36 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 30 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 31 = 0.00000 0.00000 ## TweakPhiSubtree 1 52 31 / 100 = 0.31000 0.00606 ## TweakPhiSegment 6 67 35 / 109 = 0.32110 0.01263 ## TweakPsiSubtree 0 65 50 / 139 = 0.35971 0.01331 ## TweakPsiSegment 1 61 38 / 118 = 0.32203 0.01414 ## TweakPsiPhiSubtree 10 69 43 / 103 = 0.41748 0.00851 ## TweakPsiPhiSegment 5 35 13 / 58 = 0.22414 0.00356 ## TweakHbondSubtree 2 40 22 / 86 = 0.25581 0.00652 ## TweakHbondSegment 2 26 10 / 49 = 0.20408 0.00334 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 24 17 / 42 = 0.40476 0.00128 ## FixOmega 0 0 0 / 30 = 0.00000 0.00000 ## Backrub 17 36 9 / 56 = 0.16071 0.00241 ## BigBackrub 11 12 3 / 40 = 0.07500 0.00125 ## OneRotamer 0 72 27 / 224 = 0.12054 0.00653 ## ClashingRotamer 1 2 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 5 1 0 / 27 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 65 = 0.00000 0.00000 ## CloseGap 0 16 6 / 133 = 0.04511 0.01227 ## HealGap 0 6 2 / 92 = 0.02174 0.00167 ## MoveGap 0 0 0 / 27 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 72 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 76 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 36 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 164 = 0.00000 0.00000 ## CrossOver 0 0 0 / 36 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 34 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 35 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L47 # TweakPhi removed gap before (T0547)E37 # TweakPhi removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)I55 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Q458 # TweakPhi removed gap before (T0547)E338 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPsiSubtree removed gap before (T0547)L465 # TweakPsiPhi removed gap before (T0547)L54 # TweakPsiSubtree removed gap before (T0547)D40 # TweakPhi removed gap before (T0547)K17 # TweakPhi removed gap before (T0547)D103 # TweakPsiSubtree removed gap before (T0547)E561 # TweakPsiSubtree removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPhi removed gap before (T0547)L223 # TweakPhi removed gap before (T0547)A518 # TweakPsiSubtree removed gap before (T0547)E338 # TweakPhi removed gap before (T0547)A536 # TweakPsiPhi removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)D434 # TweakPhi removed gap before (T0547)F453 # TweakPhi removed gap before (T0547)R259 # TweakPsiPhi removed gap before (T0547)L529 # TweakPhi removed gap before (T0547)Y122 # TweakPhi removed gap before (T0547)T207 # TweakPsiSubtree removed gap before (T0547)I59 # TweakPsiSubtree removed gap before (T0547)F204 # TweakPhi removed gap before (T0547)L468 # TweakPsiPhi removed gap before (T0547)E552 # TweakPsiSubtree removed gap before (T0547)E257 # TweakPhi removed gap before (T0547)E576 # TweakPhi removed gap before (T0547)E240 # TweakPsiSubtree removed gap before (T0547)L224 # TweakPhi removed gap before (T0547)I609 # TweakPsiSubtree removed gap before (T0547)C22 # TweakPsiPhi removed gap before (T0547)L389 # generation 25: best score out of 40: T0547.try1-opt2 213.49617 cost/residue, 952 clashes 0.13837 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 10 / 50 = 0.20000 0.00435 ## JiggleSubtree 0 21 12 / 116 = 0.10345 0.01119 ## JiggleSegment 1 5 3 / 48 = 0.06250 0.00307 ## OptSubtree 0 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 36 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 31 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 32 = 0.00000 0.00000 ## TweakPhiSubtree 1 54 31 / 106 = 0.29245 0.00572 ## TweakPhiSegment 7 72 38 / 119 = 0.31933 0.01181 ## TweakPsiSubtree 0 68 52 / 145 = 0.35862 0.01306 ## TweakPsiSegment 1 65 41 / 127 = 0.32283 0.01371 ## TweakPsiPhiSubtree 11 71 43 / 107 = 0.40187 0.00819 ## TweakPsiPhiSegment 6 36 14 / 61 = 0.22951 0.00367 ## TweakHbondSubtree 2 41 22 / 88 = 0.25000 0.00637 ## TweakHbondSegment 2 26 10 / 50 = 0.20000 0.00327 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 24 17 / 42 = 0.40476 0.00128 ## FixOmega 0 0 0 / 31 = 0.00000 0.00000 ## Backrub 18 38 10 / 61 = 0.16393 0.00241 ## BigBackrub 11 12 3 / 40 = 0.07500 0.00125 ## OneRotamer 0 75 27 / 232 = 0.11638 0.00631 ## ClashingRotamer 1 2 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 5 1 0 / 28 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 67 = 0.00000 0.00000 ## CloseGap 0 16 6 / 140 = 0.04286 0.01166 ## HealGap 0 6 2 / 94 = 0.02128 0.00164 ## MoveGap 0 0 0 / 27 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 76 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 78 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 36 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 170 = 0.00000 0.00000 ## CrossOver 0 0 0 / 36 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 37 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 37 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)I23 # TweakPsiSubtree removed gap before (T0547)L234 # TweakPhi removed gap before (T0547)K543 # TweakPsiSubtree removed gap before (T0547)D586 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPsiPhi removed gap before (T0547)Q448 # TweakPsiSubtree removed gap before (T0547)L515 # TweakPhi removed gap before (T0547)Q309 # TweakPsiSubtree removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)D566 # TweakPsiSubtree removed gap before (T0547)K607 # TweakPhi removed gap before (T0547)K264 # TweakPsiSubtree removed gap before (T0547)Q458 # TweakPsiSubtree removed gap before (T0547)I145 # TweakPsiSubtree removed gap before (T0547)K260 # TweakPsiSubtree removed gap before (T0547)A326 # TweakPsiPhi removed gap before (T0547)D503 # TweakPsiSubtree removed gap before (T0547)K171 # TweakPhi removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)E346 # TweakPsiSubtree removed gap before (T0547)A189 # TweakPsiPhi removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)Y63 # TweakPsiPhi removed gap before (T0547)Q237 # TweakPsiPhi removed gap before (T0547)I382 # TweakPsiPhi removed gap before (T0547)A330 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G42 # TweakPsiSubtree removed gap before (T0547)R474 # TweakPsiSubtree removed gap before (T0547)S197 # TweakPsiPhi removed gap before (T0547)I34 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L54 # TweakPsiPhi removed gap before (T0547)K587 # TweakPhi removed gap before (T0547)N18 # TweakPsiPhi removed gap before (T0547)E535 # TweakPsiSubtree removed gap before (T0547)A119 # TweakPhi removed gap before (T0547)G126 # generation 26: best score out of 40: T0547.try1-opt2 213.15742 cost/residue, 941 clashes 0.13827 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 11 / 52 = 0.21154 0.00420 ## JiggleSubtree 0 22 13 / 120 = 0.10833 0.01100 ## JiggleSegment 1 7 5 / 52 = 0.09615 0.01090 ## OptSubtree 0 0 0 / 47 = 0.00000 0.00000 ## OptSegment 0 0 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 37 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 32 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 34 = 0.00000 0.00000 ## TweakPhiSubtree 1 54 31 / 106 = 0.29245 0.00572 ## TweakPhiSegment 7 76 41 / 126 = 0.32540 0.01161 ## TweakPsiSubtree 0 71 54 / 156 = 0.34615 0.01313 ## TweakPsiSegment 1 69 45 / 135 = 0.33333 0.01351 ## TweakPsiPhiSubtree 11 72 43 / 111 = 0.38739 0.00790 ## TweakPsiPhiSegment 6 39 16 / 68 = 0.23529 0.00375 ## TweakHbondSubtree 2 42 23 / 92 = 0.25000 0.00662 ## TweakHbondSegment 2 28 10 / 53 = 0.18868 0.00309 ## TweakMultimer 35 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 24 17 / 43 = 0.39535 0.00125 ## FixOmega 0 0 0 / 31 = 0.00000 0.00000 ## Backrub 20 38 10 / 65 = 0.15385 0.00226 ## BigBackrub 11 12 3 / 40 = 0.07500 0.00125 ## OneRotamer 0 77 28 / 237 = 0.11814 0.00623 ## ClashingRotamer 1 2 0 / 36 = 0.00000 0.00000 ## ClusteredRotamer 5 1 0 / 30 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 68 = 0.00000 0.00000 ## CloseGap 0 16 6 / 144 = 0.04167 0.01134 ## HealGap 0 7 2 / 98 = 0.02041 0.00157 ## MoveGap 0 0 0 / 28 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 77 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 81 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 37 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 176 = 0.00000 0.00000 ## CrossOver 0 0 0 / 36 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 39 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 38 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)R70 # TweakPsiSubtree removed gap before (T0547)G395 # TweakPsiSubtree removed gap before (T0547)D602 # TweakPsiPhi removed gap before (T0547)A214 # TweakPsiSubtree removed gap before (T0547)P533 # TweakPsiSubtree removed gap before (T0547)T228 # TweakPsiSubtree removed gap before (T0547)K589 # TweakPsiSubtree removed gap before (T0547)A276 # TweakPsiSubtree removed gap before (T0547)I145 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPsiPhi removed gap before (T0547)A147 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)N216 # TweakPsiSubtree removed gap before (T0547)L271 # TweakPhi removed gap before (T0547)I609 # TweakPsiSubtree removed gap before (T0547)I15 # TweakPsiPhi removed gap before (T0547)G198 # TweakPsiPhi removed gap before (T0547)Y605 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)K196 # TweakPsiSubtree removed gap before (T0547)E158 # TweakPsiSubtree removed gap before (T0547)H151 # TweakPsiPhi removed gap before (T0547)Q281 # TweakPhi removed gap before (T0547)E285 # TweakPsiSubtree removed gap before (T0547)G143 # TweakPsiSubtree removed gap before (T0547)G126 # TweakPhi removed gap before (T0547)K171 # TweakPsiSubtree removed gap before (T0547)L244 # TweakPsiSubtree removed gap before (T0547)N80 # TweakPhi removed gap before (T0547)K357 # BackrubGuts cancelled---proline or break # generation 27: best score out of 40: T0547.try1-opt2 213.09407 cost/residue, 942 clashes 0.13824 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 11 / 55 = 0.20000 0.00397 ## JiggleSubtree 0 23 14 / 124 = 0.11290 0.01087 ## JiggleSegment 1 7 5 / 60 = 0.08333 0.00945 ## OptSubtree 0 0 0 / 48 = 0.00000 0.00000 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 39 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 33 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 36 = 0.00000 0.00000 ## TweakPhiSubtree 1 55 32 / 108 = 0.29630 0.00589 ## TweakPhiSegment 8 78 41 / 128 = 0.32031 0.01142 ## TweakPsiSubtree 0 74 55 / 167 = 0.32934 0.01242 ## TweakPsiSegment 1 74 48 / 143 = 0.33566 0.01363 ## TweakPsiPhiSubtree 12 76 43 / 115 = 0.37391 0.00762 ## TweakPsiPhiSegment 6 41 17 / 71 = 0.23944 0.00365 ## TweakHbondSubtree 2 43 24 / 96 = 0.25000 0.00655 ## TweakHbondSegment 2 30 12 / 55 = 0.21818 0.00372 ## TweakMultimer 36 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 24 17 / 43 = 0.39535 0.00125 ## FixOmega 0 0 0 / 32 = 0.00000 0.00000 ## Backrub 21 39 10 / 66 = 0.15152 0.00222 ## BigBackrub 12 12 3 / 41 = 0.07317 0.00122 ## OneRotamer 0 79 29 / 244 = 0.11885 0.00623 ## ClashingRotamer 1 2 0 / 39 = 0.00000 0.00000 ## ClusteredRotamer 5 1 0 / 31 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 72 = 0.00000 0.00000 ## CloseGap 0 16 6 / 149 = 0.04027 0.01096 ## HealGap 0 7 2 / 102 = 0.01961 0.00151 ## MoveGap 0 0 0 / 28 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 79 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 82 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 38 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 180 = 0.00000 0.00000 ## CrossOver 0 0 0 / 37 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 40 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 41 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)G19 # TweakPsiSubtree removed gap before (T0547)H53 # TweakPsiSubtree removed gap before (T0547)S341 # TweakPsiSubtree removed gap before (T0547)A374 # TweakPsiSubtree removed gap before (T0547)L399 # TweakPsiPhi removed gap before (T0547)A431 # TweakPhi removed gap before (T0547)M2 # TweakPsiPhi removed gap before (T0547)V300 # TweakPsiSubtree removed gap before (T0547)K304 # TweakPhi removed gap before (T0547)L583 # TweakPsiSubtree removed gap before (T0547)N221 # TweakPsiSubtree removed gap before (T0547)L266 # TweakPsiPhi removed gap before (T0547)G252 # TweakPsiSubtree removed gap before (T0547)F510 # TweakPsiSubtree removed gap before (T0547)L563 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)K113 # TweakPhi removed gap before (T0547)L85 # TweakPsiSubtree removed gap before (T0547)G487 # TweakPhi removed gap before (T0547)I254 # TweakPhi removed gap before (T0547)I157 # TweakPhi removed gap before (T0547)A374 # TweakPhi removed gap before (T0547)Q458 # TweakPhi removed gap before (T0547)H329 # TweakPsiSubtree removed gap before (T0547)D562 # TweakPsiSubtree removed gap before (T0547)P461 # TweakPsiSubtree removed gap before (T0547)I212 # TweakPsiSubtree removed gap before (T0547)D422 # TweakPsiSubtree removed gap before (T0547)K357 # TweakPsiSubtree removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)N18 # TweakPsiPhi removed gap before (T0547)H527 # TweakPsiSubtree removed gap before (T0547)G395 # TweakPsiSubtree removed gap before (T0547)G199 # TweakPsiPhi removed gap before (T0547)Q448 # generation 28: best score out of 40: T0547.try1-opt2 213.08055 cost/residue, 941 clashes 0.13778 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 20 12 / 57 = 0.21053 0.00565 ## JiggleSubtree 0 24 14 / 127 = 0.11024 0.01061 ## JiggleSegment 1 10 6 / 70 = 0.08571 0.00820 ## OptSubtree 0 0 0 / 50 = 0.00000 0.00000 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 39 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 37 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 37 = 0.00000 0.00000 ## TweakPhiSubtree 1 56 33 / 111 = 0.29730 0.00578 ## TweakPhiSegment 8 81 45 / 133 = 0.33835 0.01120 ## TweakPsiSubtree 0 78 57 / 178 = 0.32022 0.01235 ## TweakPsiSegment 1 80 52 / 155 = 0.33548 0.01274 ## TweakPsiPhiSubtree 15 77 43 / 117 = 0.36752 0.00749 ## TweakPsiPhiSegment 8 42 18 / 75 = 0.24000 0.00359 ## TweakHbondSubtree 2 44 24 / 99 = 0.24242 0.00635 ## TweakHbondSegment 2 32 13 / 60 = 0.21667 0.00345 ## TweakMultimer 37 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 24 17 / 43 = 0.39535 0.00125 ## FixOmega 0 0 0 / 34 = 0.00000 0.00000 ## Backrub 21 39 10 / 69 = 0.14493 0.00213 ## BigBackrub 12 12 3 / 42 = 0.07143 0.00119 ## OneRotamer 0 83 29 / 250 = 0.11600 0.00608 ## ClashingRotamer 1 2 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 5 1 0 / 31 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 75 = 0.01333 0.00035 ## CloseGap 0 16 6 / 153 = 0.03922 0.01067 ## HealGap 0 7 2 / 103 = 0.01942 0.00150 ## MoveGap 0 0 0 / 29 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 80 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 85 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 39 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 183 = 0.00000 0.00000 ## CrossOver 0 0 0 / 37 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 40 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 42 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)P533 # TweakPsiSubtree removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)D586 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)G421 # TweakPsiSubtree removed gap before (T0547)M571 # TweakPsiPhi removed gap before (T0547)S445 # TweakPsiPhi removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)G262 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPhi removed gap before (T0547)K423 # TweakPhi removed gap before (T0547)E164 # TweakPsiPhi removed gap before (T0547)K493 # TweakPhi removed gap before (T0547)G524 # TweakPsiSubtree removed gap before (T0547)K415 # TweakPhi removed gap before (T0547)F66 # TweakPsiSubtree removed gap before (T0547)P46 # TweakPhi removed gap before (T0547)L515 # TweakPhi removed gap before (T0547)L529 # TweakPsiSubtree removed gap before (T0547)M463 # TweakPhi removed gap before (T0547)D401 # TweakPhi removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)Q458 # TweakPhi removed gap before (T0547)E12 # TweakPsiSubtree removed gap before (T0547)K414 # TweakPsiSubtree removed gap before (T0547)H591 # TweakPsiSubtree removed gap before (T0547)N221 # TweakPhi removed gap before (T0547)L116 # TweakPhi removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)N425 # TweakPsiSubtree removed gap before (T0547)I540 # TweakPhi removed gap before (T0547)I254 # TweakPsiSubtree removed gap before (T0547)A416 # TweakPsiPhi removed gap before (T0547)E240 # TweakPsiSubtree removed gap before (T0547)N459 # generation 29: best score out of 40: T0547.try1-opt2 212.95444 cost/residue, 937 clashes 0.13744 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 14 / 62 = 0.22581 0.00535 ## JiggleSubtree 0 25 15 / 134 = 0.11194 0.01029 ## JiggleSegment 1 10 6 / 72 = 0.08333 0.00798 ## OptSubtree 0 0 0 / 52 = 0.00000 0.00000 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 39 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 38 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 37 = 0.00000 0.00000 ## TweakPhiSubtree 1 58 34 / 115 = 0.29565 0.00626 ## TweakPhiSegment 8 86 48 / 142 = 0.33803 0.01077 ## TweakPsiSubtree 0 82 61 / 184 = 0.33152 0.01202 ## TweakPsiSegment 1 86 55 / 165 = 0.33333 0.01278 ## TweakPsiPhiSubtree 15 77 44 / 121 = 0.36364 0.00726 ## TweakPsiPhiSegment 8 44 19 / 77 = 0.24675 0.00350 ## TweakHbondSubtree 2 47 25 / 105 = 0.23810 0.00614 ## TweakHbondSegment 2 34 13 / 65 = 0.20000 0.00319 ## TweakMultimer 37 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 25 17 / 44 = 0.38636 0.00122 ## FixOmega 0 0 0 / 34 = 0.00000 0.00000 ## Backrub 22 39 10 / 69 = 0.14493 0.00213 ## BigBackrub 12 12 3 / 44 = 0.06818 0.00114 ## OneRotamer 0 83 29 / 255 = 0.11373 0.00596 ## ClashingRotamer 1 2 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 5 1 0 / 32 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 79 = 0.01266 0.00033 ## CloseGap 0 16 6 / 156 = 0.03846 0.01046 ## HealGap 0 7 2 / 107 = 0.01869 0.00144 ## MoveGap 0 0 0 / 32 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 82 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 86 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 40 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 190 = 0.00000 0.00000 ## CrossOver 0 0 0 / 37 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 40 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 43 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)E546 # TweakPsiSubtree removed gap before (T0547)K526 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I269 # TweakPhi removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPsiPhi removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)F530 # Closed gap before (T0547)T154 # TweakPsiSubtree removed gap before (T0547)E158 # TweakPsiSubtree removed gap before (T0547)A569 # TweakPsiSubtree removed gap before (T0547)K589 # TweakPsiPhi removed gap before (T0547)N24 # TweakPsiSubtree removed gap before (T0547)P128 # TweakPsiSubtree removed gap before (T0547)L155 # TweakPsiPhi removed gap before (T0547)D393 # TweakPsiSubtree removed gap before (T0547)G42 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPsiSubtree removed gap before (T0547)V215 # TweakPsiSubtree removed gap before (T0547)K367 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A81 # TweakPhi removed gap before (T0547)V522 # TweakPsiPhi removed gap before (T0547)L394 # TweakPsiSubtree removed gap before (T0547)S579 # TweakPsiSubtree removed gap before (T0547)D602 # TweakPsiSubtree removed gap before (T0547)L418 # TweakPsiSubtree removed gap before (T0547)V87 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E595 # TweakPsiSubtree removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPhi removed gap before (T0547)R439 # TweakPsiPhi removed gap before (T0547)F530 # TweakPhi removed gap before (T0547)D401 # TweakPhi removed gap before (T0547)N328 # TweakPhi removed gap before (T0547)D168 # TweakPsiPhi removed gap before (T0547)H568 # TweakPsiPhi removed gap before (T0547)D422 # TweakPsiSubtree removed gap before (T0547)F510 # TweakPsiSubtree removed gap before (T0547)P176 # TweakPsiSubtree removed gap before (T0547)Q437 # TweakPsiSubtree removed gap before (T0547)I193 # generation 30: best score out of 40: T0547.try1-opt2 212.91780 cost/residue, 936 clashes 0.13712 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 23 15 / 65 = 0.23077 0.00520 ## JiggleSubtree 0 25 15 / 141 = 0.10638 0.00978 ## JiggleSegment 1 11 7 / 76 = 0.09211 0.00866 ## OptSubtree 0 0 0 / 52 = 0.00000 0.00000 ## OptSegment 0 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 39 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 40 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 37 = 0.00000 0.00000 ## TweakPhiSubtree 1 59 34 / 118 = 0.28814 0.00610 ## TweakPhiSegment 10 90 51 / 147 = 0.34694 0.01159 ## TweakPsiSubtree 0 83 63 / 195 = 0.32308 0.01140 ## TweakPsiSegment 1 94 58 / 181 = 0.32044 0.01217 ## TweakPsiPhiSubtree 15 79 44 / 125 = 0.35200 0.00703 ## TweakPsiPhiSegment 8 46 19 / 81 = 0.23457 0.00332 ## TweakHbondSubtree 2 50 28 / 111 = 0.25225 0.00625 ## TweakHbondSegment 2 35 13 / 71 = 0.18310 0.00292 ## TweakMultimer 37 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 25 17 / 44 = 0.38636 0.00122 ## FixOmega 0 0 0 / 34 = 0.00000 0.00000 ## Backrub 23 39 10 / 69 = 0.14493 0.00213 ## BigBackrub 14 12 3 / 45 = 0.06667 0.00111 ## OneRotamer 0 84 30 / 259 = 0.11583 0.00592 ## ClashingRotamer 1 2 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 5 1 0 / 32 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 82 = 0.01220 0.00032 ## CloseGap 0 16 6 / 158 = 0.03797 0.01033 ## HealGap 0 7 2 / 111 = 0.01802 0.00139 ## MoveGap 0 0 0 / 34 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 84 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 88 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 42 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 193 = 0.00000 0.00000 ## CrossOver 0 0 0 / 39 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 40 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 44 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)K27 # TweakPsiPhi removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)P461 # TweakPsiSubtree removed gap before (T0547)A30 # TweakPsiPhi removed gap before (T0547)L446 # TweakPhi removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)M149 # TweakPsiPhi removed gap before (T0547)K260 # TweakPhi removed gap before (T0547)I609 # TweakPhi removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)Y279 # TweakPsiSubtree removed gap before (T0547)A569 # TweakPsiSubtree removed gap before (T0547)V35 # TweakPsiSubtree removed gap before (T0547)T390 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K71 # TweakPhi removed gap before (T0547)L362 # TweakPhi removed gap before (T0547)E164 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)F204 # TweakPhi removed gap before (T0547)K246 # TweakPhi removed gap before (T0547)I592 # TweakPsiSubtree removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPsiPhi removed gap before (T0547)G198 # TweakPhi removed gap before (T0547)E225 # TweakPhi removed gap before (T0547)S287 # TweakPhi removed gap before (T0547)W454 # TweakPsiSubtree removed gap before (T0547)K27 # TweakPhi removed gap before (T0547)D572 # TweakPhi removed gap before (T0547)K415 # TweakPsiPhi removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)L419 # TweakPsiPhi removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)Y396 # TweakPsiSubtree removed gap before (T0547)F318 # TweakPsiSubtree removed gap before (T0547)R50 # generation 31: best score out of 40: T0547.try1-opt2 212.85042 cost/residue, 936 clashes 0.13787 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 27 18 / 73 = 0.24658 0.00509 ## JiggleSubtree 0 25 15 / 145 = 0.10345 0.00951 ## JiggleSegment 1 14 10 / 83 = 0.12048 0.01114 ## OptSubtree 0 0 0 / 53 = 0.00000 0.00000 ## OptSegment 0 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 41 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 40 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 39 = 0.00000 0.00000 ## TweakPhiSubtree 1 63 37 / 126 = 0.29365 0.00659 ## TweakPhiSegment 10 93 52 / 154 = 0.33766 0.01108 ## TweakPsiSubtree 0 87 66 / 205 = 0.32195 0.01145 ## TweakPsiSegment 1 96 59 / 189 = 0.31217 0.01171 ## TweakPsiPhiSubtree 15 81 46 / 129 = 0.35659 0.00692 ## TweakPsiPhiSegment 8 46 19 / 83 = 0.22892 0.00324 ## TweakHbondSubtree 2 50 28 / 114 = 0.24561 0.00609 ## TweakHbondSegment 2 35 13 / 72 = 0.18056 0.00288 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 25 18 / 45 = 0.40000 0.00125 ## FixOmega 0 0 0 / 36 = 0.00000 0.00000 ## Backrub 24 41 11 / 73 = 0.15068 0.00208 ## BigBackrub 14 12 3 / 46 = 0.06522 0.00109 ## OneRotamer 0 87 31 / 267 = 0.11610 0.00605 ## ClashingRotamer 1 2 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 6 1 0 / 32 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 86 = 0.01163 0.00031 ## CloseGap 0 16 6 / 159 = 0.03774 0.01027 ## HealGap 0 7 2 / 112 = 0.01786 0.00137 ## MoveGap 0 0 0 / 34 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 86 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 44 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 89 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 42 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 196 = 0.00000 0.00000 ## CrossOver 0 0 0 / 40 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 40 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 45 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Q520 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPhi removed gap before (T0547)K196 # TweakPsiSubtree removed gap before (T0547)P176 # TweakPsiSubtree removed gap before (T0547)D364 # TweakPsiSubtree removed gap before (T0547)S112 # TweakPsiSubtree removed gap before (T0547)I550 # TweakPhi removed gap before (T0547)D469 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K86 # TweakPhi removed gap before (T0547)Q424 # TweakPsiSubtree removed gap before (T0547)Q437 # TweakPhi removed gap before (T0547)L332 # TweakPsiSubtree removed gap before (T0547)I537 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPhi removed gap before (T0547)L97 # TweakPsiSubtree removed gap before (T0547)E457 # TweakPhi removed gap before (T0547)A268 # TweakPsiSubtree removed gap before (T0547)A405 # TweakPsiPhi removed gap before (T0547)L163 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPhi removed gap before (T0547)L515 # TweakPhi removed gap before (T0547)K102 # TweakPsiPhi removed gap before (T0547)G604 # TweakPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)I319 # TweakPsiSubtree removed gap before (T0547)L85 # TweakPsiSubtree removed gap before (T0547)K196 # TweakPsiSubtree removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)Q448 # TweakPsiSubtree removed gap before (T0547)S445 # TweakPsiPhi removed gap before (T0547)S608 # generation 32: best score out of 40: T0547.try1-opt2 212.83043 cost/residue, 934 clashes 0.13715 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 30 20 / 77 = 0.25974 0.00515 ## JiggleSubtree 0 25 15 / 149 = 0.10067 0.00925 ## JiggleSegment 2 15 10 / 94 = 0.10638 0.00984 ## OptSubtree 0 0 0 / 54 = 0.00000 0.00000 ## OptSegment 0 0 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 41 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 42 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 39 = 0.00000 0.00000 ## TweakPhiSubtree 1 64 37 / 131 = 0.28244 0.00634 ## TweakPhiSegment 11 94 52 / 160 = 0.32500 0.01066 ## TweakPsiSubtree 0 89 67 / 212 = 0.31604 0.01125 ## TweakPsiSegment 1 103 60 / 201 = 0.29851 0.01115 ## TweakPsiPhiSubtree 17 82 46 / 132 = 0.34848 0.00676 ## TweakPsiPhiSegment 8 46 19 / 84 = 0.22619 0.00320 ## TweakHbondSubtree 2 53 30 / 119 = 0.25210 0.00645 ## TweakHbondSegment 2 39 14 / 77 = 0.18182 0.00276 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 25 18 / 45 = 0.40000 0.00125 ## FixOmega 0 0 0 / 38 = 0.00000 0.00000 ## Backrub 26 42 12 / 77 = 0.15584 0.00211 ## BigBackrub 14 12 3 / 46 = 0.06522 0.00109 ## OneRotamer 0 90 32 / 275 = 0.11636 0.00620 ## ClashingRotamer 1 2 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 6 1 0 / 32 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 87 = 0.01149 0.00030 ## CloseGap 0 16 6 / 162 = 0.03704 0.01008 ## HealGap 0 7 2 / 114 = 0.01754 0.00135 ## MoveGap 0 0 0 / 35 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 89 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 44 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 89 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 43 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 200 = 0.00000 0.00000 ## CrossOver 0 0 0 / 41 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 42 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 45 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)K135 # TweakPsiSubtree removed gap before (T0547)N373 # TweakPsiPhi removed gap before (T0547)G133 # TweakPhi removed gap before (T0547)E546 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)G544 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPsiSubtree removed gap before (T0547)G107 # TweakPhi removed gap before (T0547)Q56 # TweakPsiSubtree removed gap before (T0547)G594 # TweakPsiSubtree removed gap before (T0547)P178 # TweakPhi removed gap before (T0547)V87 # TweakPhi removed gap before (T0547)A536 # TweakPhi removed gap before (T0547)I59 # TweakPsiSubtree removed gap before (T0547)Y491 # TweakPsiSubtree removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)F498 # TweakPhi removed gap before (T0547)L468 # TweakPhi removed gap before (T0547)V516 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)R293 # TweakPsiSubtree removed gap before (T0547)D558 # TweakPsiPhi removed gap before (T0547)F510 # TweakPsiSubtree removed gap before (T0547)G150 # TweakPhi removed gap before (T0547)D168 # TweakPsiSubtree removed gap before (T0547)Q424 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Q588 # TweakPhi removed gap before (T0547)D434 # TweakPhi removed gap before (T0547)H233 # TweakPsiSubtree removed gap before (T0547)Q437 # TweakPsiSubtree removed gap before (T0547)V436 # TweakPsiSubtree removed gap before (T0547)V35 # TweakPhi removed gap before (T0547)I369 # TweakPsiSubtree removed gap before (T0547)N105 # TweakPsiSubtree removed gap before (T0547)E72 # TweakPsiPhi removed gap before (T0547)S236 # TweakPhi removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)L523 # TweakPsiSubtree removed gap before (T0547)I432 # generation 33: best score out of 40: T0547.try1-opt2 212.70073 cost/residue, 935 clashes 0.13687 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 34 23 / 83 = 0.27711 0.00594 ## JiggleSubtree 0 25 15 / 156 = 0.09615 0.00884 ## JiggleSegment 2 15 10 / 99 = 0.10101 0.00934 ## OptSubtree 0 0 0 / 54 = 0.00000 0.00000 ## OptSegment 0 0 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 41 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 42 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 41 = 0.00000 0.00000 ## TweakPhiSubtree 1 67 39 / 135 = 0.28889 0.00660 ## TweakPhiSegment 12 97 57 / 170 = 0.33529 0.01042 ## TweakPsiSubtree 0 93 71 / 224 = 0.31696 0.01080 ## TweakPsiSegment 1 105 62 / 209 = 0.29665 0.01145 ## TweakPsiPhiSubtree 21 84 47 / 135 = 0.34815 0.00670 ## TweakPsiPhiSegment 10 47 19 / 86 = 0.22093 0.00313 ## TweakHbondSubtree 2 55 32 / 125 = 0.25600 0.00627 ## TweakHbondSegment 2 39 14 / 78 = 0.17949 0.00272 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 26 18 / 46 = 0.39130 0.00123 ## FixOmega 0 0 0 / 40 = 0.00000 0.00000 ## Backrub 28 42 12 / 81 = 0.14815 0.00200 ## BigBackrub 14 12 3 / 46 = 0.06522 0.00109 ## OneRotamer 0 92 33 / 284 = 0.11620 0.00601 ## ClashingRotamer 1 2 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 6 1 0 / 32 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 87 = 0.01149 0.00030 ## CloseGap 0 16 6 / 163 = 0.03681 0.01001 ## HealGap 0 7 2 / 115 = 0.01739 0.00134 ## MoveGap 0 0 0 / 36 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 90 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 90 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 44 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 205 = 0.00000 0.00000 ## CrossOver 0 0 0 / 41 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 42 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 46 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)N253 # TweakPhi removed gap before (T0547)I32 # TweakPhi removed gap before (T0547)Y63 # TweakPhi removed gap before (T0547)F51 # TweakPhi removed gap before (T0547)N67 # TweakPsiSubtree removed gap before (T0547)H329 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)E257 # TweakPhi removed gap before (T0547)I157 # TweakPsiSubtree removed gap before (T0547)L523 # TweakPhi removed gap before (T0547)F453 # TweakPsiSubtree removed gap before (T0547)N443 # TweakPhi removed gap before (T0547)L596 # TweakPhi removed gap before (T0547)D393 # TweakPsiPhi removed gap before (T0547)E162 # TweakPsiSubtree removed gap before (T0547)Q56 # TweakPsiSubtree removed gap before (T0547)L351 # TweakPsiSubtree removed gap before (T0547)P178 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)Q281 # TweakPsiPhi removed gap before (T0547)Y396 # TweakPsiSubtree removed gap before (T0547)N601 # TweakPsiSubtree removed gap before (T0547)K493 # TweakPsiSubtree removed gap before (T0547)F66 # TweakPsiSubtree removed gap before (T0547)L224 # TweakPhi removed gap before (T0547)K304 # generation 34: best score out of 40: T0547.try1-opt2 212.63434 cost/residue, 932 clashes 0.13770 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 36 23 / 91 = 0.25275 0.00542 ## JiggleSubtree 0 26 15 / 161 = 0.09317 0.00856 ## JiggleSegment 2 20 13 / 111 = 0.11712 0.00999 ## OptSubtree 0 0 0 / 54 = 0.00000 0.00000 ## OptSegment 0 0 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 41 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 43 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 42 = 0.00000 0.00000 ## TweakPhiSubtree 1 68 40 / 139 = 0.28777 0.00649 ## TweakPhiSegment 12 102 59 / 179 = 0.32961 0.00994 ## TweakPsiSubtree 0 95 71 / 232 = 0.30603 0.01043 ## TweakPsiSegment 1 106 62 / 214 = 0.28972 0.01119 ## TweakPsiPhiSubtree 21 84 47 / 137 = 0.34307 0.00660 ## TweakPsiPhiSegment 10 47 19 / 86 = 0.22093 0.00313 ## TweakHbondSubtree 2 57 32 / 132 = 0.24242 0.00594 ## TweakHbondSegment 2 40 15 / 80 = 0.18750 0.00350 ## TweakMultimer 39 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 27 18 / 47 = 0.38298 0.00120 ## FixOmega 0 0 0 / 40 = 0.00000 0.00000 ## Backrub 29 43 13 / 83 = 0.15663 0.00197 ## BigBackrub 15 12 3 / 46 = 0.06522 0.00109 ## OneRotamer 0 93 33 / 292 = 0.11301 0.00585 ## ClashingRotamer 1 2 0 / 46 = 0.00000 0.00000 ## ClusteredRotamer 6 1 0 / 34 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 89 = 0.01124 0.00030 ## CloseGap 0 17 6 / 168 = 0.03571 0.00972 ## HealGap 0 7 2 / 117 = 0.01709 0.00132 ## MoveGap 0 0 0 / 36 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 95 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 92 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 44 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 206 = 0.00000 0.00000 ## CrossOver 0 0 0 / 41 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 43 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 46 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)E361 # TweakPhi removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)D503 # TweakPhi removed gap before (T0547)E213 # TweakPsiSubtree removed gap before (T0547)S372 # TweakPsiSubtree removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)K246 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPhi removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)E552 # TweakPhi removed gap before (T0547)I592 # TweakPhi removed gap before (T0547)I573 # TweakPhi removed gap before (T0547)N297 # TweakPhi removed gap before (T0547)L351 # TweakPhi removed gap before (T0547)I166 # TweakPsiPhi removed gap before (T0547)E72 # TweakPhi removed gap before (T0547)S112 # TweakPsiSubtree removed gap before (T0547)G594 # TweakPsiPhi removed gap before (T0547)H568 # TweakPsiSubtree removed gap before (T0547)D136 # TweakPsiPhi removed gap before (T0547)G159 # TweakPhi removed gap before (T0547)G198 # TweakPsiPhi removed gap before (T0547)F66 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)S341 # TweakPhi removed gap before (T0547)M229 # TweakPhi removed gap before (T0547)Y104 # TweakPsiPhi removed gap before (T0547)F204 # TweakPhi removed gap before (T0547)A553 # TweakPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)Y122 # TweakPhi removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)D41 # TweakPsiPhi removed gap before (T0547)F324 # generation 35: best score out of 40: T0547.try1-opt2 212.58408 cost/residue, 931 clashes 0.13768 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 37 24 / 96 = 0.25000 0.00515 ## JiggleSubtree 0 26 15 / 162 = 0.09259 0.00851 ## JiggleSegment 2 21 14 / 122 = 0.11475 0.00960 ## OptSubtree 0 0 0 / 55 = 0.00000 0.00000 ## OptSegment 0 0 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 42 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 45 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 42 = 0.00000 0.00000 ## TweakPhiSubtree 1 73 42 / 147 = 0.28571 0.00622 ## TweakPhiSegment 13 110 64 / 191 = 0.33508 0.00998 ## TweakPsiSubtree 0 98 73 / 236 = 0.30932 0.01035 ## TweakPsiSegment 1 110 67 / 222 = 0.30180 0.01128 ## TweakPsiPhiSubtree 21 86 47 / 141 = 0.33333 0.00641 ## TweakPsiPhiSegment 10 47 19 / 88 = 0.21591 0.00306 ## TweakHbondSubtree 2 58 33 / 135 = 0.24444 0.00587 ## TweakHbondSegment 2 44 19 / 85 = 0.22353 0.00410 ## TweakMultimer 39 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 27 18 / 48 = 0.37500 0.00118 ## FixOmega 0 0 0 / 40 = 0.00000 0.00000 ## Backrub 30 44 13 / 85 = 0.15294 0.00192 ## BigBackrub 15 12 3 / 46 = 0.06522 0.00109 ## OneRotamer 0 95 35 / 298 = 0.11745 0.00608 ## ClashingRotamer 1 2 0 / 46 = 0.00000 0.00000 ## ClusteredRotamer 6 1 0 / 36 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 90 = 0.01111 0.00029 ## CloseGap 0 17 6 / 171 = 0.03509 0.00955 ## HealGap 0 7 2 / 119 = 0.01681 0.00129 ## MoveGap 0 0 0 / 37 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 97 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 94 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 44 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 211 = 0.00000 0.00000 ## CrossOver 0 0 0 / 42 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 44 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 48 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)E386 # TweakPhi removed gap before (T0547)E470 # TweakPsiSubtree removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)H568 # TweakPsiSubtree removed gap before (T0547)D602 # TweakPsiSubtree removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)E457 # TweakPsiSubtree removed gap before (T0547)N443 # TweakPhi removed gap before (T0547)D380 # TweakPsiSubtree removed gap before (T0547)S236 # TweakPhi removed gap before (T0547)L362 # TweakPhi removed gap before (T0547)E552 # TweakPsiPhi removed gap before (T0547)K57 # TweakPhi removed gap before (T0547)L583 # TweakPhi removed gap before (T0547)L332 # TweakPsiSubtree removed gap before (T0547)K414 # TweakPsiSubtree removed gap before (T0547)E220 # TweakPsiSubtree removed gap before (T0547)L465 # TweakPhi removed gap before (T0547)F282 # TweakPhi removed gap before (T0547)I306 # TweakPsiSubtree removed gap before (T0547)N124 # TweakPsiSubtree removed gap before (T0547)I382 # TweakPhi removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)L411 # TweakPhi removed gap before (T0547)L108 # TweakPhi removed gap before (T0547)E488 # TweakPsiPhi removed gap before (T0547)L600 # TweakPsiPhi removed gap before (T0547)S581 # TweakPhi removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)D562 # TweakPsiSubtree removed gap before (T0547)A165 # generation 36: best score out of 40: T0547.try1-opt2 212.41458 cost/residue, 930 clashes 0.13726 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 38 25 / 98 = 0.25510 0.00512 ## JiggleSubtree 0 28 17 / 168 = 0.10119 0.00907 ## JiggleSegment 2 24 16 / 136 = 0.11765 0.01027 ## OptSubtree 0 0 0 / 55 = 0.00000 0.00000 ## OptSegment 0 0 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 43 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 46 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 42 = 0.00000 0.00000 ## TweakPhiSubtree 1 76 44 / 155 = 0.28387 0.00622 ## TweakPhiSegment 14 113 66 / 196 = 0.33673 0.01051 ## TweakPsiSubtree 0 101 76 / 246 = 0.30894 0.01026 ## TweakPsiSegment 1 114 71 / 229 = 0.31004 0.01153 ## TweakPsiPhiSubtree 21 89 49 / 145 = 0.33793 0.00651 ## TweakPsiPhiSegment 11 47 19 / 88 = 0.21591 0.00306 ## TweakHbondSubtree 2 58 33 / 138 = 0.23913 0.00574 ## TweakHbondSegment 2 45 19 / 89 = 0.21348 0.00392 ## TweakMultimer 40 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 30 19 / 52 = 0.36538 0.00110 ## FixOmega 0 0 0 / 41 = 0.00000 0.00000 ## Backrub 30 45 14 / 86 = 0.16279 0.00209 ## BigBackrub 15 12 3 / 47 = 0.06383 0.00106 ## OneRotamer 0 96 36 / 304 = 0.11842 0.00601 ## ClashingRotamer 1 2 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 7 1 0 / 37 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 91 = 0.01099 0.00029 ## CloseGap 0 17 6 / 175 = 0.03429 0.00933 ## HealGap 0 7 2 / 120 = 0.01667 0.00128 ## MoveGap 0 0 0 / 38 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 98 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 94 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 44 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 218 = 0.00000 0.00000 ## CrossOver 0 0 0 / 45 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 44 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 49 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)D503 # TweakPsiSubtree removed gap before (T0547)S403 # TweakPhi removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)A569 # TweakPhi removed gap before (T0547)K175 # TweakPhi removed gap before (T0547)G517 # TweakPhi removed gap before (T0547)I538 # TweakPsiSubtree removed gap before (T0547)L515 # TweakPsiSubtree removed gap before (T0547)G455 # TweakPsiSubtree removed gap before (T0547)V35 # TweakPsiPhi removed gap before (T0547)E314 # TweakPhi removed gap before (T0547)E257 # TweakPsiPhi removed gap before (T0547)R293 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K246 # TweakPhi removed gap before (T0547)L139 # TweakPhi removed gap before (T0547)G421 # TweakPhi removed gap before (T0547)L223 # TweakPsiSubtree removed gap before (T0547)L529 # TweakPsiPhi removed gap before (T0547)I556 # TweakPsiSubtree removed gap before (T0547)Q89 # TweakPhi removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)T390 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V98 # TweakPsiSubtree removed gap before (T0547)S381 # TweakPsiSubtree removed gap before (T0547)D428 # TweakPsiSubtree removed gap before (T0547)V82 # TweakPsiSubtree removed gap before (T0547)E158 # TweakPsiSubtree removed gap before (T0547)V191 # TweakPsiSubtree removed gap before (T0547)K414 # TweakPsiPhi removed gap before (T0547)D586 # TweakPsiSubtree removed gap before (T0547)I15 # TweakPhi removed gap before (T0547)G45 # TweakPsiSubtree removed gap before (T0547)S381 # TweakPsiPhi removed gap before (T0547)L574 # generation 37: best score out of 40: T0547.try1-opt2 212.40082 cost/residue, 930 clashes 0.13738 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 41 26 / 104 = 0.25000 0.00506 ## JiggleSubtree 0 29 17 / 174 = 0.09770 0.00876 ## JiggleSegment 2 24 16 / 146 = 0.10959 0.00957 ## OptSubtree 0 0 0 / 55 = 0.00000 0.00000 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 47 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 42 = 0.00000 0.00000 ## TweakPhiSubtree 1 78 45 / 161 = 0.27950 0.00682 ## TweakPhiSegment 15 118 68 / 204 = 0.33333 0.01020 ## TweakPsiSubtree 0 106 78 / 254 = 0.30709 0.01000 ## TweakPsiSegment 1 118 73 / 238 = 0.30672 0.01146 ## TweakPsiPhiSubtree 21 92 50 / 149 = 0.33557 0.00655 ## TweakPsiPhiSegment 12 48 20 / 89 = 0.22472 0.00328 ## TweakHbondSubtree 2 59 33 / 142 = 0.23239 0.00558 ## TweakHbondSegment 2 45 19 / 91 = 0.20879 0.00383 ## TweakMultimer 40 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 30 19 / 52 = 0.36538 0.00110 ## FixOmega 0 0 0 / 41 = 0.00000 0.00000 ## Backrub 32 45 14 / 88 = 0.15909 0.00205 ## BigBackrub 15 13 3 / 48 = 0.06250 0.00104 ## OneRotamer 0 97 37 / 311 = 0.11897 0.00603 ## ClashingRotamer 1 2 0 / 50 = 0.00000 0.00000 ## ClusteredRotamer 7 1 0 / 38 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 93 = 0.01075 0.00028 ## CloseGap 0 17 6 / 177 = 0.03390 0.00922 ## HealGap 0 7 2 / 121 = 0.01653 0.00127 ## MoveGap 0 0 0 / 39 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 98 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 52 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 97 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 44 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 225 = 0.00000 0.00000 ## CrossOver 0 0 0 / 45 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 44 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 50 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)S492 # TweakPhi removed gap before (T0547)L118 # TweakPsiSubtree removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)V87 # TweakPsiPhi removed gap before (T0547)Y90 # TweakPhi removed gap before (T0547)K222 # TweakPhi removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)M229 # TweakPsiSubtree removed gap before (T0547)N11 # TweakPhi removed gap before (T0547)V397 # TweakPsiPhi removed gap before (T0547)N132 # TweakPhi removed gap before (T0547)S445 # TweakPsiSubtree removed gap before (T0547)H329 # TweakPhi removed gap before (T0547)Y605 # TweakPsiSubtree removed gap before (T0547)L598 # TweakPhi removed gap before (T0547)I306 # TweakPsiSubtree removed gap before (T0547)A146 # TweakPsiSubtree removed gap before (T0547)S372 # TweakPsiPhi removed gap before (T0547)G322 # TweakPsiSubtree removed gap before (T0547)N284 # TweakPsiSubtree removed gap before (T0547)L217 # TweakPsiSubtree removed gap before (T0547)F514 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K68 # TweakPhi removed gap before (T0547)N201 # TweakPsiPhi removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)L163 # TweakPsiSubtree removed gap before (T0547)L574 # TweakPhi removed gap before (T0547)L529 # TweakPsiSubtree removed gap before (T0547)N67 # TweakPhi removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)R323 # TweakPsiPhi removed gap before (T0547)R259 # TweakPhi removed gap before (T0547)N216 # TweakPsiPhi removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)K246 # generation 38: best score out of 40: T0547.try1-opt2 212.37079 cost/residue, 929 clashes 0.13726 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 42 26 / 107 = 0.24299 0.00492 ## JiggleSubtree 0 29 17 / 175 = 0.09714 0.00871 ## JiggleSegment 2 25 17 / 154 = 0.11039 0.00995 ## OptSubtree 0 0 0 / 55 = 0.00000 0.00000 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 48 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 43 = 0.00000 0.00000 ## TweakPhiSubtree 2 81 48 / 169 = 0.28402 0.00669 ## TweakPhiSegment 16 123 71 / 214 = 0.33178 0.00995 ## TweakPsiSubtree 0 109 81 / 261 = 0.31034 0.00993 ## TweakPsiSegment 1 122 73 / 247 = 0.29555 0.01104 ## TweakPsiPhiSubtree 21 95 51 / 154 = 0.33117 0.00662 ## TweakPsiPhiSegment 12 49 21 / 90 = 0.23333 0.00375 ## TweakHbondSubtree 2 60 33 / 145 = 0.22759 0.00546 ## TweakHbondSegment 2 45 19 / 92 = 0.20652 0.00379 ## TweakMultimer 41 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 31 20 / 53 = 0.37736 0.00115 ## FixOmega 0 0 0 / 43 = 0.00000 0.00000 ## Backrub 32 48 14 / 94 = 0.14894 0.00192 ## BigBackrub 16 13 3 / 48 = 0.06250 0.00104 ## OneRotamer 0 99 39 / 321 = 0.12150 0.00607 ## ClashingRotamer 1 2 0 / 50 = 0.00000 0.00000 ## ClusteredRotamer 7 1 0 / 38 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 95 = 0.01053 0.00028 ## CloseGap 0 17 6 / 180 = 0.03333 0.00907 ## HealGap 0 7 2 / 124 = 0.01613 0.00124 ## MoveGap 0 0 0 / 40 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 98 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 101 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 44 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 231 = 0.00000 0.00000 ## CrossOver 0 0 0 / 45 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 45 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 52 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)L583 # TweakPsiPhi removed gap before (T0547)K423 # TweakPhi removed gap before (T0547)N373 # TweakPsiPhi removed gap before (T0547)I32 # TweakPsiPhi removed gap before (T0547)S539 # TweakPhi removed gap before (T0547)K352 # TweakPsiSubtree removed gap before (T0547)K587 # TweakPhi removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPsiPhi removed gap before (T0547)G92 # TweakPhi removed gap before (T0547)V131 # TweakPsiSubtree removed gap before (T0547)M229 # TweakPhi removed gap before (T0547)L47 # TweakPsiSubtree removed gap before (T0547)D494 # TweakPsiPhi removed gap before (T0547)L85 # TweakPsiPhi removed gap before (T0547)T239 # TweakPsiSubtree removed gap before (T0547)G455 # TweakPsiSubtree removed gap before (T0547)E552 # TweakPhi removed gap before (T0547)V184 # TweakPsiSubtree removed gap before (T0547)G594 # TweakPsiSubtree removed gap before (T0547)D103 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)L411 # TweakPsiPhi removed gap before (T0547)T534 # TweakPhi removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)L275 # TweakPhi removed gap before (T0547)H384 # TweakPhi removed gap before (T0547)L206 # TweakPhi removed gap before (T0547)A536 # TweakPsiSubtree removed gap before (T0547)N459 # TweakPsiSubtree removed gap before (T0547)K68 # TweakPhi removed gap before (T0547)M450 # TweakPhi removed gap before (T0547)K607 # TweakPsiSubtree removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)T473 # generation 39: best score out of 40: T0547.try1-opt2 212.21220 cost/residue, 927 clashes 0.13693 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 43 26 / 110 = 0.23636 0.00479 ## JiggleSubtree 0 30 17 / 180 = 0.09444 0.00847 ## JiggleSegment 2 25 17 / 159 = 0.10692 0.00963 ## OptSubtree 0 0 0 / 55 = 0.00000 0.00000 ## OptSegment 0 0 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 49 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 43 = 0.00000 0.00000 ## TweakPhiSubtree 2 84 49 / 176 = 0.27841 0.00647 ## TweakPhiSegment 16 126 75 / 221 = 0.33937 0.01069 ## TweakPsiSubtree 0 111 82 / 266 = 0.30827 0.00994 ## TweakPsiSegment 1 129 78 / 258 = 0.30233 0.01080 ## TweakPsiPhiSubtree 22 95 52 / 157 = 0.33121 0.00655 ## TweakPsiPhiSegment 12 51 22 / 95 = 0.23158 0.00364 ## TweakHbondSubtree 2 61 33 / 146 = 0.22603 0.00543 ## TweakHbondSegment 2 46 19 / 99 = 0.19192 0.00352 ## TweakMultimer 42 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 32 22 / 56 = 0.39286 0.00112 ## FixOmega 0 0 0 / 43 = 0.00000 0.00000 ## Backrub 32 50 15 / 97 = 0.15464 0.00188 ## BigBackrub 16 13 3 / 49 = 0.06122 0.00102 ## OneRotamer 0 102 42 / 336 = 0.12500 0.00682 ## ClashingRotamer 1 2 0 / 51 = 0.00000 0.00000 ## ClusteredRotamer 7 1 0 / 39 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 99 = 0.01010 0.00027 ## CloseGap 0 17 6 / 183 = 0.03279 0.00892 ## HealGap 0 7 2 / 125 = 0.01600 0.00123 ## MoveGap 0 0 0 / 40 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 99 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 103 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 44 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 233 = 0.00000 0.00000 ## CrossOver 0 0 0 / 45 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 45 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 54 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)P461 # TweakPhi removed gap before (T0547)H527 # TweakPsiSubtree removed gap before (T0547)P52 # TweakPsiSubtree removed gap before (T0547)V21 # TweakPsiSubtree removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)A146 # TweakPhi removed gap before (T0547)F51 # TweakPsiPhi removed gap before (T0547)L97 # TweakPhi removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPsiPhi removed gap before (T0547)Y509 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L118 # TweakPhi removed gap before (T0547)Y25 # TweakPsiSubtree removed gap before (T0547)S490 # TweakPhi removed gap before (T0547)V35 # TweakPhi removed gap before (T0547)N459 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)N124 # TweakPsiPhi removed gap before (T0547)I23 # TweakPhi removed gap before (T0547)K76 # TweakPsiSubtree removed gap before (T0547)G517 # TweakPsiPhi removed gap before (T0547)G190 # TweakPsiPhi removed gap before (T0547)F340 # TweakPsiPhi removed gap before (T0547)L139 # TweakPhi removed gap before (T0547)K260 # TweakPhi removed gap before (T0547)N11 # TweakPhi removed gap before (T0547)G604 # TweakPsiSubtree removed gap before (T0547)V184 # TweakPsiSubtree removed gap before (T0547)L271 # TweakPhi removed gap before (T0547)K414 # TweakPhi removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPsiPhi removed gap before (T0547)L499 # TweakPsiPhi removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)A307 # TweakPhi removed gap before (T0547)I145 # TweakPhi removed gap before (T0547)I180 # generation 40: best score out of 40: T0547.try1-opt2 212.11507 cost/residue, 923 clashes 0.13667 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 46 28 / 114 = 0.24561 0.00482 ## JiggleSubtree 0 31 18 / 188 = 0.09574 0.00829 ## JiggleSegment 2 26 17 / 170 = 0.10000 0.00901 ## OptSubtree 0 0 0 / 55 = 0.00000 0.00000 ## OptSegment 0 0 0 / 43 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 50 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 43 = 0.00000 0.00000 ## TweakPhiSubtree 2 89 53 / 184 = 0.28804 0.00894 ## TweakPhiSegment 16 130 79 / 228 = 0.34649 0.01049 ## TweakPsiSubtree 0 113 82 / 274 = 0.29927 0.00965 ## TweakPsiSegment 1 132 79 / 266 = 0.29699 0.01049 ## TweakPsiPhiSubtree 22 97 54 / 161 = 0.33540 0.00654 ## TweakPsiPhiSegment 12 54 22 / 99 = 0.22222 0.00349 ## TweakHbondSubtree 2 62 34 / 149 = 0.22819 0.00536 ## TweakHbondSegment 2 46 19 / 102 = 0.18627 0.00342 ## TweakMultimer 44 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 32 22 / 56 = 0.39286 0.00112 ## FixOmega 0 0 0 / 45 = 0.00000 0.00000 ## Backrub 33 51 15 / 100 = 0.15000 0.00183 ## BigBackrub 16 15 4 / 52 = 0.07692 0.00119 ## OneRotamer 0 104 42 / 342 = 0.12281 0.00670 ## ClashingRotamer 1 2 0 / 51 = 0.00000 0.00000 ## ClusteredRotamer 7 1 0 / 39 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 102 = 0.00980 0.00026 ## CloseGap 0 17 6 / 186 = 0.03226 0.00878 ## HealGap 0 7 2 / 126 = 0.01587 0.00122 ## MoveGap 0 0 0 / 40 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 101 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 104 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 44 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 237 = 0.00000 0.00000 ## CrossOver 0 0 0 / 45 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 46 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 55 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)N404 # TweakPsiSubtree removed gap before (T0547)L223 # TweakPsiPhi removed gap before (T0547)V191 # TweakPsiSubtree removed gap before (T0547)V191 # TweakPhi removed gap before (T0547)N65 # TweakPhi removed gap before (T0547)D503 # TweakPhi removed gap before (T0547)D602 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L160 # TweakPhi removed gap before (T0547)I412 # TweakPhi removed gap before (T0547)D316 # TweakPsiSubtree removed gap before (T0547)K260 # TweakPsiSubtree removed gap before (T0547)I15 # TweakPsiPhi removed gap before (T0547)R323 # TweakPhi removed gap before (T0547)N11 # TweakPhi removed gap before (T0547)E148 # TweakPsiPhi removed gap before (T0547)I567 # TweakPhi removed gap before (T0547)A147 # TweakPsiPhi removed gap before (T0547)Y122 # TweakPsiPhi removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)Y104 # TweakPhi removed gap before (T0547)L515 # TweakPsiSubtree removed gap before (T0547)K76 # TweakPhi removed gap before (T0547)Y90 # TweakPsiSubtree removed gap before (T0547)H379 # TweakPsiPhi removed gap before (T0547)L223 # TweakPhi removed gap before (T0547)G610 # TweakPhi removed gap before (T0547)K304 # TweakPhi removed gap before (T0547)F599 # TweakPhi removed gap before (T0547)G107 # TweakPsiSubtree removed gap before (T0547)R439 # TweakPsiSubtree removed gap before (T0547)G455 # TweakPhi removed gap before (T0547)K68 # TweakPsiSubtree removed gap before (T0547)F498 # TweakPsiPhi removed gap before (T0547)E470 # generation 41: best score out of 40: T0547.try1-opt2 212.09784 cost/residue, 922 clashes 0.13761 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 48 30 / 118 = 0.25424 0.00487 ## JiggleSubtree 0 32 19 / 195 = 0.09744 0.00865 ## JiggleSegment 2 26 17 / 176 = 0.09659 0.00870 ## OptSubtree 0 0 0 / 56 = 0.00000 0.00000 ## OptSegment 0 0 0 / 43 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 44 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 51 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 44 = 0.00000 0.00000 ## TweakPhiSubtree 3 92 54 / 191 = 0.28272 0.00861 ## TweakPhiSegment 16 138 82 / 242 = 0.33884 0.00995 ## TweakPsiSubtree 0 115 83 / 281 = 0.29537 0.00941 ## TweakPsiSegment 1 134 81 / 272 = 0.29779 0.01038 ## TweakPsiPhiSubtree 22 99 56 / 166 = 0.33735 0.00672 ## TweakPsiPhiSegment 12 55 22 / 103 = 0.21359 0.00336 ## TweakHbondSubtree 2 64 35 / 153 = 0.22876 0.00539 ## TweakHbondSegment 2 48 19 / 105 = 0.18095 0.00332 ## TweakMultimer 44 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 33 23 / 58 = 0.39655 0.00120 ## FixOmega 0 0 0 / 45 = 0.00000 0.00000 ## Backrub 33 51 16 / 101 = 0.15842 0.00198 ## BigBackrub 17 15 4 / 54 = 0.07407 0.00114 ## OneRotamer 0 105 42 / 348 = 0.12069 0.00658 ## ClashingRotamer 1 2 0 / 51 = 0.00000 0.00000 ## ClusteredRotamer 7 1 0 / 39 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 103 = 0.00971 0.00026 ## CloseGap 0 17 6 / 189 = 0.03175 0.00864 ## HealGap 0 7 2 / 126 = 0.01587 0.00122 ## MoveGap 0 0 0 / 40 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 104 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 105 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 46 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 246 = 0.00000 0.00000 ## CrossOver 0 0 0 / 45 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 46 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 55 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)R259 # TweakPhi removed gap before (T0547)L378 # TweakPhi removed gap before (T0547)A127 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)D7 # TweakPhi removed gap before (T0547)R70 # TweakPsiSubtree removed gap before (T0547)A326 # TweakPsiSubtree removed gap before (T0547)Y440 # TweakPhi removed gap before (T0547)N105 # TweakPsiPhi removed gap before (T0547)L456 # TweakPsiPhi removed gap before (T0547)N61 # TweakPhi removed gap before (T0547)I8 # TweakPsiPhi removed gap before (T0547)Y519 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A121 # TweakPhi removed gap before (T0547)H591 # TweakPhi removed gap before (T0547)I388 # TweakPsiPhi removed gap before (T0547)E250 # TweakPsiPhi removed gap before (T0547)F282 # TweakPhi removed gap before (T0547)D7 # TweakPsiPhi removed gap before (T0547)D401 # TweakPsiPhi removed gap before (T0547)E12 # TweakPsiSubtree removed gap before (T0547)K267 # TweakPsiSubtree removed gap before (T0547)E406 # TweakPhi removed gap before (T0547)L408 # TweakPsiSubtree removed gap before (T0547)I129 # TweakPsiSubtree removed gap before (T0547)A189 # TweakPhi removed gap before (T0547)L100 # TweakPsiSubtree removed gap before (T0547)G455 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPsiSubtree removed gap before (T0547)V611 # TweakPsiPhi removed gap before (T0547)G322 # TweakPsiPhi removed gap before (T0547)N425 # TweakPsiPhi removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPsiSubtree removed gap before (T0547)E213 # TweakPhi removed gap before (T0547)D503 # TweakPsiSubtree removed gap before (T0547)E158 # TweakPsiPhi removed gap before (T0547)K196 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)H384 # TweakPsiSubtree removed gap before (T0547)L85 # TweakPsiSubtree removed gap before (T0547)D564 # TweakPsiSubtree removed gap before (T0547)L206 # generation 42: best score out of 40: T0547.try1-opt2 212.01018 cost/residue, 919 clashes 0.13631 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 51 30 / 122 = 0.24590 0.00471 ## JiggleSubtree 0 32 19 / 202 = 0.09406 0.00835 ## JiggleSegment 2 26 17 / 183 = 0.09290 0.00837 ## OptSubtree 0 0 0 / 56 = 0.00000 0.00000 ## OptSegment 0 0 0 / 43 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 46 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 51 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 45 = 0.00000 0.00000 ## TweakPhiSubtree 5 98 58 / 201 = 0.28856 0.00947 ## TweakPhiSegment 17 139 83 / 244 = 0.34016 0.01017 ## TweakPsiSubtree 0 118 85 / 288 = 0.29514 0.00931 ## TweakPsiSegment 1 138 83 / 282 = 0.29433 0.01074 ## TweakPsiPhiSubtree 22 103 60 / 177 = 0.33898 0.00638 ## TweakPsiPhiSegment 15 56 23 / 105 = 0.21905 0.00330 ## TweakHbondSubtree 2 64 35 / 155 = 0.22581 0.00532 ## TweakHbondSegment 2 49 20 / 110 = 0.18182 0.00418 ## TweakMultimer 44 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 35 25 / 61 = 0.40984 0.00122 ## FixOmega 0 0 0 / 47 = 0.00000 0.00000 ## Backrub 36 53 16 / 103 = 0.15534 0.00194 ## BigBackrub 17 15 4 / 55 = 0.07273 0.00112 ## OneRotamer 0 108 44 / 357 = 0.12325 0.00657 ## ClashingRotamer 1 2 0 / 52 = 0.00000 0.00000 ## ClusteredRotamer 7 1 0 / 39 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 104 = 0.00962 0.00025 ## CloseGap 0 17 6 / 190 = 0.03158 0.00859 ## HealGap 0 7 2 / 126 = 0.01587 0.00122 ## MoveGap 0 0 0 / 40 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 104 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 54 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 107 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 46 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 250 = 0.00000 0.00000 ## CrossOver 0 0 0 / 45 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 47 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 57 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)K311 # TweakPhi removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)R439 # TweakPhi removed gap before (T0547)T228 # TweakPhi removed gap before (T0547)V436 # TweakPhi removed gap before (T0547)K68 # TweakPsiPhi removed gap before (T0547)L375 # TweakPsiSubtree removed gap before (T0547)V21 # TweakPsiSubtree removed gap before (T0547)Q458 # TweakPsiSubtree removed gap before (T0547)L38 # TweakPsiSubtree removed gap before (T0547)K203 # TweakPhi removed gap before (T0547)V98 # TweakPsiPhi removed gap before (T0547)N124 # TweakPhi removed gap before (T0547)E535 # TweakPhi removed gap before (T0547)K415 # TweakPsiSubtree removed gap before (T0547)L163 # TweakPsiPhi removed gap before (T0547)K27 # TweakPhi removed gap before (T0547)V191 # TweakPhi removed gap before (T0547)I592 # TweakPhi removed gap before (T0547)K310 # TweakPsiPhi removed gap before (T0547)E294 # TweakPsiSubtree removed gap before (T0547)Y396 # TweakPhi removed gap before (T0547)I369 # TweakPsiSubtree removed gap before (T0547)I350 # TweakPsiPhi removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)E595 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPhi removed gap before (T0547)R259 # TweakPhi removed gap before (T0547)V299 # TweakPsiPhi removed gap before (T0547)D562 # generation 43: best score out of 40: T0547.try1-opt2 211.98898 cost/residue, 915 clashes 0.13694 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 52 31 / 126 = 0.24603 0.00461 ## JiggleSubtree 0 33 20 / 209 = 0.09569 0.00868 ## JiggleSegment 2 27 19 / 189 = 0.10053 0.00890 ## OptSubtree 0 0 0 / 56 = 0.00000 0.00000 ## OptSegment 0 0 0 / 44 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 47 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 52 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 46 = 0.00000 0.00000 ## TweakPhiSubtree 5 101 60 / 210 = 0.28571 0.00926 ## TweakPhiSegment 17 143 86 / 254 = 0.33858 0.00997 ## TweakPsiSubtree 0 118 85 / 289 = 0.29412 0.00928 ## TweakPsiSegment 1 141 86 / 290 = 0.29655 0.01092 ## TweakPsiPhiSubtree 22 105 60 / 181 = 0.33149 0.00624 ## TweakPsiPhiSegment 15 56 23 / 107 = 0.21495 0.00324 ## TweakHbondSubtree 2 64 36 / 156 = 0.23077 0.00530 ## TweakHbondSegment 2 53 21 / 119 = 0.17647 0.00394 ## TweakMultimer 45 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 38 28 / 65 = 0.43077 0.00127 ## FixOmega 0 0 0 / 47 = 0.00000 0.00000 ## Backrub 36 56 18 / 106 = 0.16981 0.00211 ## BigBackrub 17 15 4 / 56 = 0.07143 0.00110 ## OneRotamer 0 111 46 / 366 = 0.12568 0.00683 ## ClashingRotamer 1 2 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 7 1 0 / 42 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 105 = 0.00952 0.00025 ## CloseGap 0 17 6 / 190 = 0.03158 0.00859 ## HealGap 0 7 2 / 128 = 0.01562 0.00120 ## MoveGap 0 0 0 / 40 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 107 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 55 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 109 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 46 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 253 = 0.00000 0.00000 ## CrossOver 0 0 0 / 45 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 48 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 57 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)K222 # TweakPhi removed gap before (T0547)D480 # TweakPsiPhi removed gap before (T0547)A431 # TweakPhi removed gap before (T0547)G198 # TweakPsiSubtree removed gap before (T0547)L362 # TweakPhi removed gap before (T0547)I417 # TweakPsiPhi removed gap before (T0547)G92 # TweakPsiPhi removed gap before (T0547)T534 # TweakPhi removed gap before (T0547)L139 # TweakPhi removed gap before (T0547)I269 # TweakPhi removed gap before (T0547)K589 # TweakPsiSubtree removed gap before (T0547)L271 # TweakPsiPhi removed gap before (T0547)L118 # TweakPsiSubtree removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)Y565 # TweakPhi removed gap before (T0547)L100 # TweakPsiSubtree removed gap before (T0547)E60 # TweakPsiSubtree removed gap before (T0547)K28 # TweakPsiPhi removed gap before (T0547)I609 # TweakPsiPhi removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)N123 # TweakPhi removed gap before (T0547)H532 # TweakPhi removed gap before (T0547)V82 # TweakPhi removed gap before (T0547)N11 # TweakPhi removed gap before (T0547)I551 # TweakPhi removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)T228 # TweakPsiSubtree removed gap before (T0547)G273 # TweakPsiSubtree removed gap before (T0547)Y491 # TweakPsiPhi removed gap before (T0547)G524 # TweakPhi removed gap before (T0547)I32 # TweakPsiSubtree removed gap before (T0547)E521 # TweakPsiSubtree removed gap before (T0547)N425 # TweakPhi removed gap before (T0547)D486 # TweakPhi removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)L332 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)T409 # TweakPhi removed gap before (T0547)L54 # TweakPhi removed gap before (T0547)G235 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiPhi removed gap before (T0547)G190 # generation 44: best score out of 40: T0547.try1-opt2 211.98312 cost/residue, 915 clashes 0.13685 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 54 32 / 129 = 0.24806 0.00462 ## JiggleSubtree 0 33 20 / 213 = 0.09390 0.00851 ## JiggleSegment 2 27 19 / 194 = 0.09794 0.00867 ## OptSubtree 0 0 0 / 56 = 0.00000 0.00000 ## OptSegment 0 0 0 / 44 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 48 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 54 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 46 = 0.00000 0.00000 ## TweakPhiSubtree 6 108 65 / 224 = 0.29018 0.00893 ## TweakPhiSegment 17 147 90 / 263 = 0.34221 0.00975 ## TweakPsiSubtree 0 120 87 / 294 = 0.29592 0.00927 ## TweakPsiSegment 1 144 87 / 297 = 0.29293 0.01073 ## TweakPsiPhiSubtree 22 108 62 / 187 = 0.33155 0.00619 ## TweakPsiPhiSegment 15 57 23 / 109 = 0.21101 0.00318 ## TweakHbondSubtree 2 66 39 / 162 = 0.24074 0.00580 ## TweakHbondSegment 2 54 21 / 122 = 0.17213 0.00385 ## TweakMultimer 46 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 39 29 / 67 = 0.43284 0.00127 ## FixOmega 0 0 0 / 48 = 0.00000 0.00000 ## Backrub 36 58 19 / 109 = 0.17431 0.00214 ## BigBackrub 17 15 4 / 56 = 0.07143 0.00110 ## OneRotamer 0 111 46 / 378 = 0.12169 0.00661 ## ClashingRotamer 1 2 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 7 1 0 / 43 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 106 = 0.00943 0.00025 ## CloseGap 0 18 6 / 193 = 0.03109 0.00846 ## HealGap 0 7 2 / 128 = 0.01562 0.00120 ## MoveGap 0 0 0 / 41 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 108 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 55 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 113 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 47 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 255 = 0.00000 0.00000 ## CrossOver 0 0 0 / 46 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 48 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 57 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)Y565 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I6 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)D33 # TweakPsiSubtree removed gap before (T0547)D312 # TweakPhi removed gap before (T0547)I609 # TweakPsiSubtree removed gap before (T0547)P533 # TweakPsiPhi removed gap before (T0547)H568 # TweakPhi removed gap before (T0547)K415 # TweakPhi removed gap before (T0547)A147 # TweakPhi removed gap before (T0547)N96 # TweakPhi removed gap before (T0547)V277 # TweakPsiPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)L116 # TweakPsiPhi removed gap before (T0547)F51 # TweakPhi removed gap before (T0547)I302 # TweakPsiSubtree removed gap before (T0547)E595 # TweakPhi removed gap before (T0547)F204 # TweakPhi removed gap before (T0547)L223 # TweakPhi removed gap before (T0547)A247 # TweakPhi removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)I238 # TweakPsiSubtree removed gap before (T0547)V82 # TweakPsiPhi removed gap before (T0547)I478 # TweakPsiSubtree removed gap before (T0547)Q520 # TweakPsiSubtree removed gap before (T0547)A127 # TweakPsiPhi removed gap before (T0547)I142 # TweakPhi removed gap before (T0547)I417 # TweakPhi removed gap before (T0547)T534 # TweakPsiSubtree removed gap before (T0547)L223 # TweakPhi removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)R323 # TweakPhi removed gap before (T0547)G133 # TweakPsiSubtree removed gap before (T0547)E220 # generation 45: best score out of 40: T0547.try1-opt2 211.96231 cost/residue, 922 clashes 0.13664 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 56 32 / 133 = 0.24060 0.00448 ## JiggleSubtree 0 33 20 / 217 = 0.09217 0.00836 ## JiggleSegment 2 29 20 / 198 = 0.10101 0.00864 ## OptSubtree 0 0 0 / 57 = 0.00000 0.00000 ## OptSegment 0 0 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 50 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 55 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 47 = 0.00000 0.00000 ## TweakPhiSubtree 7 110 67 / 230 = 0.29130 0.00888 ## TweakPhiSegment 21 151 94 / 275 = 0.34182 0.00951 ## TweakPsiSubtree 0 121 88 / 296 = 0.29730 0.00929 ## TweakPsiSegment 1 147 90 / 306 = 0.29412 0.01048 ## TweakPsiPhiSubtree 22 111 64 / 191 = 0.33508 0.00618 ## TweakPsiPhiSegment 15 58 23 / 111 = 0.20721 0.00312 ## TweakHbondSubtree 2 67 40 / 169 = 0.23669 0.00569 ## TweakHbondSegment 2 55 22 / 124 = 0.17742 0.00381 ## TweakMultimer 46 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 40 30 / 71 = 0.42254 0.00125 ## FixOmega 0 0 0 / 50 = 0.00000 0.00000 ## Backrub 38 58 19 / 110 = 0.17273 0.00212 ## BigBackrub 17 15 4 / 56 = 0.07143 0.00110 ## OneRotamer 0 115 48 / 387 = 0.12403 0.00651 ## ClashingRotamer 1 2 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 8 1 0 / 43 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 109 = 0.00917 0.00024 ## CloseGap 0 18 6 / 195 = 0.03077 0.00837 ## HealGap 0 7 2 / 131 = 0.01527 0.00118 ## MoveGap 0 0 0 / 41 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 113 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 56 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 114 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 47 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 258 = 0.00000 0.00000 ## CrossOver 0 0 0 / 46 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 48 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 59 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)G192 # TweakPhi removed gap before (T0547)M2 # TweakPhi removed gap before (T0547)A195 # TweakPsiSubtree removed gap before (T0547)E552 # TweakPsiPhi removed gap before (T0547)L38 # TweakPhi removed gap before (T0547)K353 # TweakPsiSubtree removed gap before (T0547)D364 # TweakPhi removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)P451 # TweakPsiSubtree removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)K353 # TweakPsiPhi removed gap before (T0547)L100 # TweakPsiSubtree removed gap before (T0547)K264 # TweakPhi removed gap before (T0547)G64 # TweakPhi removed gap before (T0547)S368 # TweakPhi removed gap before (T0547)L248 # TweakPhi removed gap before (T0547)D383 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPhi removed gap before (T0547)D298 # TweakPhi removed gap before (T0547)K177 # TweakPsiSubtree removed gap before (T0547)T390 # TweakPsiSubtree removed gap before (T0547)I129 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L118 # TweakPsiSubtree removed gap before (T0547)Y104 # TweakPhi removed gap before (T0547)K20 # TweakPsiPhi removed gap before (T0547)L394 # TweakPsiSubtree removed gap before (T0547)L358 # TweakPhi removed gap before (T0547)K353 # TweakPsiSubtree removed gap before (T0547)D564 # TweakPhi removed gap before (T0547)G101 # TweakPsiPhi removed gap before (T0547)M525 # TweakPhi removed gap before (T0547)S403 # TweakPhi removed gap before (T0547)D503 # generation 46: best score out of 40: T0547.try1-opt2 211.86864 cost/residue, 923 clashes 0.13683 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 56 32 / 136 = 0.23529 0.00438 ## JiggleSubtree 0 33 20 / 220 = 0.09091 0.00824 ## JiggleSegment 2 33 23 / 211 = 0.10900 0.00884 ## OptSubtree 0 0 0 / 57 = 0.00000 0.00000 ## OptSegment 0 0 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 50 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 55 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 47 = 0.00000 0.00000 ## TweakPhiSubtree 8 114 69 / 240 = 0.28750 0.00871 ## TweakPhiSegment 21 156 98 / 283 = 0.34629 0.00980 ## TweakPsiSubtree 0 122 89 / 301 = 0.29568 0.00916 ## TweakPsiSegment 1 149 91 / 314 = 0.28981 0.01030 ## TweakPsiPhiSubtree 22 112 65 / 195 = 0.33333 0.00622 ## TweakPsiPhiSegment 15 59 24 / 112 = 0.21429 0.00323 ## TweakHbondSubtree 2 68 41 / 172 = 0.23837 0.00567 ## TweakHbondSegment 2 57 24 / 130 = 0.18462 0.00377 ## TweakMultimer 47 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 40 30 / 73 = 0.41096 0.00122 ## FixOmega 0 0 0 / 50 = 0.00000 0.00000 ## Backrub 39 60 20 / 112 = 0.17857 0.00211 ## BigBackrub 17 15 4 / 59 = 0.06780 0.00105 ## OneRotamer 0 118 49 / 398 = 0.12312 0.00642 ## ClashingRotamer 1 2 0 / 56 = 0.00000 0.00000 ## ClusteredRotamer 9 1 0 / 47 = 0.00000 0.00000 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 113 = 0.00885 0.00023 ## CloseGap 0 18 6 / 195 = 0.03077 0.00837 ## HealGap 0 7 2 / 132 = 0.01515 0.00117 ## MoveGap 0 0 0 / 41 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 113 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 56 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 114 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 47 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 260 = 0.00000 0.00000 ## CrossOver 0 0 0 / 46 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 50 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 62 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)L47 # TweakPsiPhi removed gap before (T0547)L529 # TweakPhi removed gap before (T0547)A296 # TweakPsiPhi removed gap before (T0547)E386 # TweakPsiSubtree removed gap before (T0547)G111 # TweakPhi removed gap before (T0547)E595 # TweakPhi removed gap before (T0547)M463 # TweakPhi removed gap before (T0547)L223 # TweakPhi removed gap before (T0547)E320 # TweakPsiSubtree removed gap before (T0547)E158 # TweakPsiPhi removed gap before (T0547)L391 # TweakPsiSubtree removed gap before (T0547)K196 # TweakPhi removed gap before (T0547)K36 # TweakPsiSubtree removed gap before (T0547)L394 # TweakPhi removed gap before (T0547)Y396 # TweakPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)E576 # TweakPsiSubtree removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)E470 # TweakPhi removed gap before (T0547)L606 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)R259 # TweakPsiSubtree removed gap before (T0547)E346 # TweakPhi removed gap before (T0547)H231 # TweakPhi removed gap before (T0547)F318 # TweakPsiPhi removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPhi removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)Q281 # TweakPhi removed gap before (T0547)N124 # TweakPsiPhi removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)A30 # TweakPhi removed gap before (T0547)L339 # TweakPhi removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)V547 # TweakPsiSubtree removed gap before (T0547)L365 # TweakPhi removed gap before (T0547)K352 # TweakPsiPhi removed gap before (T0547)D383 # TweakPhi removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)I145 # TweakPhi removed gap before (T0547)N249 # TweakPhi removed gap before (T0547)S112 # TweakPsiPhi removed gap before (T0547)I8 # generation 47: best score out of 40: T0547.try1-opt2 211.83298 cost/residue, 923 clashes 0.13683 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 56 33 / 137 = 0.24088 0.00440 ## JiggleSubtree 0 33 20 / 222 = 0.09009 0.00817 ## JiggleSegment 2 33 23 / 217 = 0.10599 0.00860 ## OptSubtree 0 0 0 / 58 = 0.00000 0.00000 ## OptSegment 0 0 0 / 48 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 50 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 56 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 47 = 0.00000 0.00000 ## TweakPhiSubtree 8 118 70 / 252 = 0.27778 0.00829 ## TweakPhiSegment 22 163 103 / 294 = 0.35034 0.00984 ## TweakPsiSubtree 0 123 89 / 305 = 0.29180 0.00904 ## TweakPsiSegment 1 153 91 / 325 = 0.28000 0.00995 ## TweakPsiPhiSubtree 22 113 65 / 199 = 0.32663 0.00609 ## TweakPsiPhiSegment 15 60 25 / 116 = 0.21552 0.00350 ## TweakHbondSubtree 2 70 43 / 176 = 0.24432 0.00585 ## TweakHbondSegment 2 57 24 / 132 = 0.18182 0.00371 ## TweakMultimer 48 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 41 30 / 74 = 0.40541 0.00120 ## FixOmega 0 0 0 / 51 = 0.00000 0.00000 ## Backrub 40 60 20 / 114 = 0.17544 0.00207 ## BigBackrub 17 17 6 / 63 = 0.09524 0.00163 ## OneRotamer 0 119 49 / 405 = 0.12099 0.00631 ## ClashingRotamer 1 2 0 / 57 = 0.00000 0.00000 ## ClusteredRotamer 9 2 1 / 48 = 0.02083 0.00052 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 115 = 0.00870 0.00023 ## CloseGap 0 18 6 / 198 = 0.03030 0.00824 ## HealGap 0 7 2 / 134 = 0.01493 0.00115 ## MoveGap 0 0 0 / 42 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 115 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 58 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 114 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 48 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 265 = 0.00000 0.00000 ## CrossOver 0 0 0 / 47 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 50 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 62 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)D103 # TweakPhi removed gap before (T0547)A330 # TweakPhi removed gap before (T0547)I319 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPsiPhi removed gap before (T0547)R50 # TweakPsiPhi removed gap before (T0547)I538 # TweakPhi removed gap before (T0547)D558 # TweakPhi removed gap before (T0547)L85 # TweakPsiSubtree removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)E225 # TweakPhi removed gap before (T0547)Q520 # TweakPhi removed gap before (T0547)F514 # TweakPhi removed gap before (T0547)F392 # TweakPsiSubtree removed gap before (T0547)V516 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)N141 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I350 # TweakPhi removed gap before (T0547)F232 # TweakPhi removed gap before (T0547)Q58 # TweakPhi removed gap before (T0547)G421 # TweakPhi removed gap before (T0547)K68 # TweakPsiSubtree removed gap before (T0547)V98 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPsiSubtree removed gap before (T0547)A431 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L600 # TweakPsiPhi removed gap before (T0547)W194 # TweakPhi removed gap before (T0547)G235 # TweakPsiSubtree removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)G181 # TweakPhi removed gap before (T0547)I212 # TweakPsiSubtree removed gap before (T0547)G252 # generation 48: best score out of 40: T0547.try1-opt2 211.65633 cost/residue, 920 clashes 0.13716 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 56 33 / 138 = 0.23913 0.00437 ## JiggleSubtree 0 34 21 / 229 = 0.09170 0.00840 ## JiggleSegment 2 33 23 / 222 = 0.10360 0.00840 ## OptSubtree 0 0 0 / 60 = 0.00000 0.00000 ## OptSegment 0 0 0 / 48 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 51 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 56 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 47 = 0.00000 0.00000 ## TweakPhiSubtree 9 121 72 / 260 = 0.27692 0.00825 ## TweakPhiSegment 22 169 105 / 303 = 0.34653 0.00988 ## TweakPsiSubtree 0 124 90 / 309 = 0.29126 0.00909 ## TweakPsiSegment 1 156 94 / 333 = 0.28228 0.01070 ## TweakPsiPhiSubtree 22 114 65 / 201 = 0.32338 0.00603 ## TweakPsiPhiSegment 15 62 27 / 118 = 0.22881 0.00369 ## TweakHbondSubtree 2 74 44 / 185 = 0.23784 0.00565 ## TweakHbondSegment 2 59 25 / 134 = 0.18657 0.00367 ## TweakMultimer 49 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 41 30 / 75 = 0.40000 0.00119 ## FixOmega 0 0 0 / 52 = 0.00000 0.00000 ## Backrub 41 62 21 / 117 = 0.17949 0.00221 ## BigBackrub 19 18 7 / 65 = 0.10769 0.00193 ## OneRotamer 0 121 50 / 417 = 0.11990 0.00616 ## ClashingRotamer 1 2 0 / 59 = 0.00000 0.00000 ## ClusteredRotamer 9 3 1 / 51 = 0.01961 0.00049 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 117 = 0.00855 0.00022 ## CloseGap 0 18 6 / 201 = 0.02985 0.00812 ## HealGap 0 7 2 / 134 = 0.01493 0.00115 ## MoveGap 0 0 0 / 42 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 118 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 58 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 116 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 49 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 269 = 0.00000 0.00000 ## CrossOver 0 0 0 / 48 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 50 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 62 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)Q458 # TweakPsiPhi removed gap before (T0547)K283 # TweakPhi removed gap before (T0547)I609 # TweakPhi removed gap before (T0547)V299 # TweakPsiPhi removed gap before (T0547)N373 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)W454 # TweakPsiPhi removed gap before (T0547)I417 # TweakPsiSubtree removed gap before (T0547)Y565 # TweakPsiPhi removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)K414 # TweakPhi removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)L332 # TweakPhi removed gap before (T0547)F510 # TweakPhi removed gap before (T0547)R323 # TweakPhi removed gap before (T0547)D602 # TweakPhi removed gap before (T0547)N284 # TweakPsiPhi removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)V331 # TweakPsiSubtree removed gap before (T0547)I145 # TweakPhi removed gap before (T0547)Q424 # TweakPhi removed gap before (T0547)R474 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)S202 # TweakPhi removed gap before (T0547)I145 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)R577 # TweakPhi removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)L560 # TweakPsiSubtree removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)L606 # TweakPsiSubtree removed gap before (T0547)M261 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L574 # TweakPhi removed gap before (T0547)A569 # TweakPsiPhi removed gap before (T0547)N18 # TweakPhi removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)K86 # generation 49: best score out of 40: T0547.try1-opt2 211.63062 cost/residue, 919 clashes 0.13717 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 58 35 / 144 = 0.24306 0.00454 ## JiggleSubtree 0 34 21 / 236 = 0.08898 0.00815 ## JiggleSegment 2 33 23 / 227 = 0.10132 0.00822 ## OptSubtree 0 0 0 / 60 = 0.00000 0.00000 ## OptSegment 0 0 0 / 48 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 52 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 57 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 48 = 0.00000 0.00000 ## TweakPhiSubtree 10 125 76 / 268 = 0.28358 0.00837 ## TweakPhiSegment 22 172 107 / 312 = 0.34295 0.00961 ## TweakPsiSubtree 0 126 92 / 313 = 0.29393 0.00905 ## TweakPsiSegment 1 160 96 / 341 = 0.28152 0.01055 ## TweakPsiPhiSubtree 22 118 67 / 205 = 0.32683 0.00593 ## TweakPsiPhiSegment 15 64 28 / 123 = 0.22764 0.00375 ## TweakHbondSubtree 2 74 45 / 187 = 0.24064 0.00568 ## TweakHbondSegment 2 61 25 / 139 = 0.17986 0.00354 ## TweakMultimer 51 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 41 30 / 78 = 0.38462 0.00114 ## FixOmega 0 0 0 / 53 = 0.00000 0.00000 ## Backrub 41 63 22 / 119 = 0.18487 0.00218 ## BigBackrub 22 18 7 / 67 = 0.10448 0.00187 ## OneRotamer 0 122 50 / 420 = 0.11905 0.00612 ## ClashingRotamer 1 2 0 / 59 = 0.00000 0.00000 ## ClusteredRotamer 9 3 1 / 53 = 0.01887 0.00047 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 120 = 0.00833 0.00022 ## CloseGap 0 18 6 / 203 = 0.02956 0.00804 ## HealGap 0 7 2 / 136 = 0.01471 0.00113 ## MoveGap 0 0 0 / 42 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 121 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 58 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 120 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 50 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 271 = 0.00000 0.00000 ## CrossOver 0 0 0 / 49 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 52 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 63 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPhi removed gap before (T0547)Y366 # TweakPhi removed gap before (T0547)N249 # TweakPsiPhi removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)E376 # TweakPsiPhi removed gap before (T0547)I306 # TweakPsiPhi removed gap before (T0547)Y363 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L499 # TweakPhi removed gap before (T0547)T256 # TweakPsiSubtree removed gap before (T0547)I306 # TweakPsiSubtree removed gap before (T0547)N105 # TweakPsiPhi removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)M571 # TweakPhi removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)M2 # TweakPsiSubtree removed gap before (T0547)D380 # TweakPhi removed gap before (T0547)I212 # TweakPhi removed gap before (T0547)T482 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPsiPhi removed gap before (T0547)E115 # TweakPhi removed gap before (T0547)L275 # TweakPhi removed gap before (T0547)G74 # TweakPhi removed gap before (T0547)V584 # TweakPsiSubtree removed gap before (T0547)N67 # TweakPsiSubtree removed gap before (T0547)I167 # TweakPhi removed gap before (T0547)A405 # TweakPsiSubtree removed gap before (T0547)A189 # TweakPsiSubtree removed gap before (T0547)M261 # TweakPsiSubtree removed gap before (T0547)T413 # TweakPsiPhi removed gap before (T0547)F599 # TweakPsiSubtree removed gap before (T0547)F460 # TweakPsiPhi removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)Y279 # TweakPsiSubtree removed gap before (T0547)I537 # TweakPsiSubtree removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)Y565 # TweakPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)L97 # TweakPsiSubtree removed gap before (T0547)V299 # generation 50: best score out of 40: T0547.try1-opt2 211.62021 cost/residue, 920 clashes 0.13706 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 60 35 / 147 = 0.23810 0.00445 ## JiggleSubtree 0 34 21 / 239 = 0.08787 0.00805 ## JiggleSegment 2 34 24 / 233 = 0.10300 0.00808 ## OptSubtree 0 0 0 / 62 = 0.00000 0.00000 ## OptSegment 0 0 0 / 49 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 52 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 57 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 49 = 0.00000 0.00000 ## TweakPhiSubtree 11 128 79 / 276 = 0.28623 0.00821 ## TweakPhiSegment 22 174 109 / 317 = 0.34385 0.00962 ## TweakPsiSubtree 0 126 92 / 318 = 0.28931 0.00890 ## TweakPsiSegment 1 165 100 / 355 = 0.28169 0.01033 ## TweakPsiPhiSubtree 23 121 70 / 209 = 0.33493 0.00608 ## TweakPsiPhiSegment 15 65 29 / 128 = 0.22656 0.00382 ## TweakHbondSubtree 2 77 46 / 195 = 0.23590 0.00578 ## TweakHbondSegment 2 62 26 / 141 = 0.18440 0.00354 ## TweakMultimer 52 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 41 30 / 79 = 0.37975 0.00113 ## FixOmega 0 0 0 / 53 = 0.00000 0.00000 ## Backrub 42 66 22 / 124 = 0.17742 0.00209 ## BigBackrub 22 20 8 / 73 = 0.10959 0.00174 ## OneRotamer 0 122 50 / 424 = 0.11792 0.00606 ## ClashingRotamer 1 2 0 / 60 = 0.00000 0.00000 ## ClusteredRotamer 9 3 1 / 55 = 0.01818 0.00046 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 122 = 0.00820 0.00022 ## CloseGap 0 18 6 / 205 = 0.02927 0.00796 ## HealGap 0 7 2 / 137 = 0.01460 0.00112 ## MoveGap 0 0 0 / 42 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 122 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 58 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 121 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 50 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 275 = 0.00000 0.00000 ## CrossOver 0 0 0 / 50 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 54 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 63 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)K71 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)A296 # TweakPhi removed gap before (T0547)G159 # TweakPsiSubtree removed gap before (T0547)E546 # TweakPsiPhi removed gap before (T0547)V611 # TweakPsiPhi removed gap before (T0547)A146 # TweakPsiSubtree removed gap before (T0547)F227 # TweakPhi removed gap before (T0547)G107 # TweakPsiSubtree removed gap before (T0547)A330 # TweakPsiSubtree removed gap before (T0547)A276 # TweakPsiPhi removed gap before (T0547)G92 # TweakPsiSubtree removed gap before (T0547)V397 # TweakPhi removed gap before (T0547)F93 # TweakPhi removed gap before (T0547)L394 # TweakPsiSubtree removed gap before (T0547)L420 # TweakPhi removed gap before (T0547)S287 # TweakPsiSubtree removed gap before (T0547)Q56 # TweakPhi removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)R183 # TweakPhi removed gap before (T0547)I388 # TweakPsiSubtree removed gap before (T0547)F93 # TweakPhi removed gap before (T0547)A476 # TweakPsiPhi removed gap before (T0547)I538 # TweakPsiSubtree removed gap before (T0547)D452 # TweakPsiPhi removed gap before (T0547)V397 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPsiSubtree removed gap before (T0547)N289 # TweakPsiPhi removed gap before (T0547)I489 # TweakPsiPhi removed gap before (T0547)I369 # TweakPsiSubtree removed gap before (T0547)P496 # TweakPsiSubtree removed gap before (T0547)R323 # TweakPhi removed gap before (T0547)L362 # TweakPhi removed gap before (T0547)N270 # TweakPhi removed gap before (T0547)A147 # TweakPhi removed gap before (T0547)L155 # TweakPhi removed gap before (T0547)G190 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I23 # TweakPsiPhi removed gap before (T0547)G133 # TweakPsiPhi removed gap before (T0547)A247 # TweakPsiPhi removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)I193 # generation 51: best score out of 40: T0547.try1-opt2 211.42035 cost/residue, 913 clashes 0.13716 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 60 36 / 149 = 0.24161 0.00459 ## JiggleSubtree 0 34 21 / 242 = 0.08678 0.00795 ## JiggleSegment 2 34 24 / 236 = 0.10169 0.00797 ## OptSubtree 0 0 0 / 62 = 0.00000 0.00000 ## OptSegment 0 0 0 / 49 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 53 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 58 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 50 = 0.00000 0.00000 ## TweakPhiSubtree 11 128 79 / 278 = 0.28417 0.00815 ## TweakPhiSegment 23 180 115 / 332 = 0.34639 0.00956 ## TweakPsiSubtree 0 128 92 / 326 = 0.28221 0.00869 ## TweakPsiSegment 1 167 101 / 362 = 0.27901 0.01013 ## TweakPsiPhiSubtree 27 125 73 / 214 = 0.34112 0.00597 ## TweakPsiPhiSegment 16 69 31 / 135 = 0.22963 0.00371 ## TweakHbondSubtree 2 78 47 / 198 = 0.23737 0.00574 ## TweakHbondSegment 2 63 28 / 147 = 0.19048 0.00355 ## TweakMultimer 55 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 41 30 / 79 = 0.37975 0.00113 ## FixOmega 0 0 0 / 54 = 0.00000 0.00000 ## Backrub 43 66 22 / 128 = 0.17188 0.00202 ## BigBackrub 22 20 8 / 74 = 0.10811 0.00172 ## OneRotamer 0 125 54 / 434 = 0.12442 0.00667 ## ClashingRotamer 1 2 0 / 60 = 0.00000 0.00000 ## ClusteredRotamer 9 4 2 / 58 = 0.03448 0.00199 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 125 = 0.00800 0.00021 ## CloseGap 0 18 6 / 207 = 0.02899 0.00789 ## HealGap 0 7 2 / 139 = 0.01439 0.00111 ## MoveGap 0 0 0 / 45 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 123 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 58 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 121 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 50 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 280 = 0.00000 0.00000 ## CrossOver 0 0 0 / 51 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 54 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 63 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)I551 # TweakPhi removed gap before (T0547)M149 # TweakPsiPhi removed gap before (T0547)D428 # TweakPsiSubtree removed gap before (T0547)I388 # TweakPsiSubtree removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)D3 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPhi removed gap before (T0547)L408 # TweakPsiSubtree removed gap before (T0547)L47 # TweakPhi removed gap before (T0547)Q89 # TweakPhi removed gap before (T0547)E37 # TweakPhi removed gap before (T0547)K506 # TweakPsiSubtree removed gap before (T0547)L557 # TweakPhi removed gap before (T0547)D168 # TweakPsiSubtree removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)K76 # TweakPsiPhi removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPhi removed gap before (T0547)S539 # TweakPsiSubtree removed gap before (T0547)A114 # TweakPsiSubtree removed gap before (T0547)L49 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)L217 # TweakPhi removed gap before (T0547)N80 # TweakPsiSubtree removed gap before (T0547)L420 # TweakPsiPhi removed gap before (T0547)V336 # TweakPsiPhi removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)Y122 # TweakPhi removed gap before (T0547)T390 # TweakPsiSubtree removed gap before (T0547)L560 # Closed gap before (T0547)T154 # TweakPhi removed gap before (T0547)K246 # generation 52: best score out of 40: T0547.try1-opt2 211.39806 cost/residue, 912 clashes 0.13742 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 61 37 / 151 = 0.24503 0.00548 ## JiggleSubtree 0 35 22 / 249 = 0.08835 0.00782 ## JiggleSegment 2 35 24 / 241 = 0.09959 0.00781 ## OptSubtree 0 0 0 / 63 = 0.00000 0.00000 ## OptSegment 0 0 0 / 50 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 54 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 59 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 51 = 0.00000 0.00000 ## TweakPhiSubtree 11 134 83 / 287 = 0.28920 0.00828 ## TweakPhiSegment 23 182 117 / 339 = 0.34513 0.00947 ## TweakPsiSubtree 0 129 92 / 331 = 0.27795 0.00855 ## TweakPsiSegment 1 168 102 / 370 = 0.27568 0.00991 ## TweakPsiPhiSubtree 27 127 74 / 217 = 0.34101 0.00597 ## TweakPsiPhiSegment 16 70 32 / 138 = 0.23188 0.00363 ## TweakHbondSubtree 2 80 49 / 206 = 0.23786 0.00561 ## TweakHbondSegment 2 65 29 / 149 = 0.19463 0.00370 ## TweakMultimer 57 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 43 31 / 82 = 0.37805 0.00118 ## FixOmega 0 0 0 / 54 = 0.00000 0.00000 ## Backrub 43 67 23 / 129 = 0.17829 0.00205 ## BigBackrub 22 21 9 / 76 = 0.11842 0.00187 ## OneRotamer 0 126 54 / 439 = 0.12301 0.00659 ## ClashingRotamer 1 2 0 / 62 = 0.00000 0.00000 ## ClusteredRotamer 9 4 2 / 63 = 0.03175 0.00183 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 125 = 0.00800 0.00021 ## CloseGap 0 18 6 / 209 = 0.02871 0.00781 ## HealGap 0 7 2 / 139 = 0.01439 0.00111 ## MoveGap 0 0 0 / 46 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 125 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 58 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 123 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 50 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 286 = 0.00000 0.00000 ## CrossOver 0 0 0 / 54 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 55 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 64 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)I382 # TweakPhi removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)G159 # TweakPsiSubtree removed gap before (T0547)I212 # TweakPhi removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)G205 # TweakPsiSubtree removed gap before (T0547)K589 # TweakPhi removed gap before (T0547)F324 # TweakPsiPhi removed gap before (T0547)F232 # TweakPhi removed gap before (T0547)E26 # TweakPsiSubtree removed gap before (T0547)L418 # TweakPsiSubtree removed gap before (T0547)F282 # TweakPsiSubtree removed gap before (T0547)G143 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPhi removed gap before (T0547)V94 # TweakPsiSubtree removed gap before (T0547)D40 # TweakPhi removed gap before (T0547)D494 # TweakPhi removed gap before (T0547)K283 # TweakPsiPhi removed gap before (T0547)E561 # TweakPsiPhi removed gap before (T0547)K86 # TweakPhi removed gap before (T0547)H242 # TweakPsiPhi removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)L511 # TweakPsiSubtree removed gap before (T0547)E406 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)V277 # TweakPhi removed gap before (T0547)Q309 # TweakPhi removed gap before (T0547)A326 # TweakPhi removed gap before (T0547)S368 # TweakPhi removed gap before (T0547)D494 # TweakPhi removed gap before (T0547)L523 # TweakPsiPhi removed gap before (T0547)F301 # TweakPhi removed gap before (T0547)F73 # TweakPsiPhi removed gap before (T0547)I254 # TweakPhi removed gap before (T0547)V98 # generation 53: best score out of 40: T0547.try1-opt2 211.38571 cost/residue, 907 clashes 0.13716 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 65 37 / 160 = 0.23125 0.00517 ## JiggleSubtree 0 35 22 / 252 = 0.08730 0.00772 ## JiggleSegment 2 35 24 / 248 = 0.09677 0.00759 ## OptSubtree 0 0 0 / 65 = 0.00000 0.00000 ## OptSegment 0 0 0 / 50 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 54 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 61 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 51 = 0.00000 0.00000 ## TweakPhiSubtree 11 135 86 / 295 = 0.29153 0.00822 ## TweakPhiSegment 23 187 121 / 350 = 0.34571 0.00930 ## TweakPsiSubtree 0 131 93 / 334 = 0.27844 0.00849 ## TweakPsiSegment 1 172 105 / 379 = 0.27704 0.00975 ## TweakPsiPhiSubtree 27 129 74 / 223 = 0.33184 0.00581 ## TweakPsiPhiSegment 16 72 33 / 140 = 0.23571 0.00372 ## TweakHbondSubtree 2 82 50 / 212 = 0.23585 0.00550 ## TweakHbondSegment 2 66 29 / 153 = 0.18954 0.00360 ## TweakMultimer 57 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 43 31 / 82 = 0.37805 0.00118 ## FixOmega 0 0 0 / 54 = 0.00000 0.00000 ## Backrub 43 68 23 / 131 = 0.17557 0.00202 ## BigBackrub 23 22 9 / 77 = 0.11688 0.00184 ## OneRotamer 0 131 57 / 453 = 0.12583 0.00683 ## ClashingRotamer 1 2 0 / 62 = 0.00000 0.00000 ## ClusteredRotamer 9 4 2 / 64 = 0.03125 0.00180 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 125 = 0.00800 0.00021 ## CloseGap 0 18 6 / 210 = 0.02857 0.00777 ## HealGap 0 7 2 / 140 = 0.01429 0.00110 ## MoveGap 0 0 0 / 48 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 125 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 58 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 125 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 50 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 289 = 0.00000 0.00000 ## CrossOver 0 0 0 / 55 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 55 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 64 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)A327 # TweakPsiSubtree removed gap before (T0547)Y440 # TweakPsiSubtree removed gap before (T0547)P461 # TweakPsiSubtree removed gap before (T0547)L497 # TweakPhi removed gap before (T0547)E552 # TweakPsiSubtree removed gap before (T0547)L499 # TweakPsiSubtree removed gap before (T0547)D312 # TweakPsiPhi removed gap before (T0547)M2 # TweakPsiSubtree removed gap before (T0547)A30 # TweakPsiSubtree removed gap before (T0547)I306 # TweakPhi removed gap before (T0547)D466 # TweakPhi removed gap before (T0547)I412 # TweakPhi removed gap before (T0547)A326 # TweakPsiSubtree removed gap before (T0547)G78 # TweakPhi removed gap before (T0547)G181 # TweakPsiSubtree removed gap before (T0547)S368 # TweakPsiPhi removed gap before (T0547)F51 # Closed gap before (T0547)T154 # TweakPsiPhi removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)G45 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)L47 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)W194 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPsiSubtree removed gap before (T0547)P496 # TweakPhi removed gap before (T0547)E457 # TweakPsiPhi removed gap before (T0547)Q448 # TweakPsiSubtree removed gap before (T0547)P176 # TweakPhi removed gap before (T0547)S475 # TweakPsiPhi removed gap before (T0547)Q588 # TweakPhi removed gap before (T0547)G78 # TweakPhi removed gap before (T0547)M261 # TweakPsiPhi removed gap before (T0547)V442 # TweakPsiSubtree removed gap before (T0547)L108 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPhi removed gap before (T0547)H53 # TweakPhi removed gap before (T0547)K493 # TweakPhi removed gap before (T0547)Q89 # generation 54: best score out of 40: T0547.try1-opt2 211.25783 cost/residue, 910 clashes 0.13779 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 66 38 / 164 = 0.23171 0.00521 ## JiggleSubtree 0 35 22 / 255 = 0.08627 0.00763 ## JiggleSegment 2 35 24 / 255 = 0.09412 0.00738 ## OptSubtree 0 0 0 / 66 = 0.00000 0.00000 ## OptSegment 0 0 0 / 51 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 54 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 61 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 51 = 0.00000 0.00000 ## TweakPhiSubtree 11 139 88 / 303 = 0.29043 0.00853 ## TweakPhiSegment 23 190 121 / 356 = 0.33989 0.00914 ## TweakPsiSubtree 0 135 97 / 343 = 0.28280 0.00846 ## TweakPsiSegment 1 176 106 / 390 = 0.27179 0.00948 ## TweakPsiPhiSubtree 28 132 75 / 229 = 0.32751 0.00567 ## TweakPsiPhiSegment 16 74 34 / 142 = 0.23944 0.00387 ## TweakHbondSubtree 2 82 51 / 216 = 0.23611 0.00543 ## TweakHbondSegment 2 68 31 / 155 = 0.20000 0.00454 ## TweakMultimer 58 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 43 32 / 84 = 0.38095 0.00117 ## FixOmega 0 0 0 / 54 = 0.00000 0.00000 ## Backrub 44 69 24 / 133 = 0.18045 0.00201 ## BigBackrub 23 23 9 / 80 = 0.11250 0.00177 ## OneRotamer 0 134 58 / 462 = 0.12554 0.00673 ## ClashingRotamer 1 2 0 / 62 = 0.00000 0.00000 ## ClusteredRotamer 9 4 2 / 74 = 0.02703 0.00156 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 126 = 0.00794 0.00021 ## CloseGap 0 18 6 / 211 = 0.02844 0.00774 ## HealGap 0 7 2 / 141 = 0.01418 0.00109 ## MoveGap 0 0 0 / 48 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 127 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 59 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 125 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 50 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 289 = 0.00000 0.00000 ## CrossOver 0 0 0 / 57 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 55 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 65 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)K607 # TweakPhi removed gap before (T0547)Q458 # TweakPhi removed gap before (T0547)I538 # TweakPhi removed gap before (T0547)D503 # TweakPhi removed gap before (T0547)A405 # TweakPhi removed gap before (T0547)L271 # TweakPsiPhi removed gap before (T0547)N373 # TweakPsiPhi removed gap before (T0547)V397 # TweakPhi removed gap before (T0547)S539 # TweakPhi removed gap before (T0547)A569 # TweakPhi removed gap before (T0547)N13 # TweakPhi removed gap before (T0547)I540 # TweakPhi removed gap before (T0547)E37 # TweakPhi removed gap before (T0547)I550 # TweakPsiPhi removed gap before (T0547)K414 # TweakPsiPhi removed gap before (T0547)F227 # TweakPhi removed gap before (T0547)H151 # TweakPsiSubtree removed gap before (T0547)G199 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A147 # TweakPhi removed gap before (T0547)E546 # TweakPsiSubtree removed gap before (T0547)S539 # TweakPhi removed gap before (T0547)D40 # TweakPsiSubtree removed gap before (T0547)F93 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)K311 # TweakPsiPhi removed gap before (T0547)E552 # TweakPsiPhi removed gap before (T0547)L234 # TweakPhi removed gap before (T0547)F513 # TweakPhi removed gap before (T0547)Q237 # TweakPsiPhi removed gap before (T0547)V35 # TweakPsiSubtree removed gap before (T0547)K582 # TweakPsiSubtree removed gap before (T0547)D3 # TweakPsiPhi removed gap before (T0547)L108 # generation 55: best score out of 40: T0547.try1-opt2 211.23164 cost/residue, 910 clashes 0.13740 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 69 38 / 173 = 0.21965 0.00493 ## JiggleSubtree 0 36 24 / 262 = 0.09160 0.00755 ## JiggleSegment 2 36 24 / 263 = 0.09125 0.00716 ## OptSubtree 0 0 0 / 66 = 0.00000 0.00000 ## OptSegment 0 0 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 54 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 61 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 52 = 0.00000 0.00000 ## TweakPhiSubtree 11 142 89 / 310 = 0.28710 0.00835 ## TweakPhiSegment 23 194 124 / 365 = 0.33973 0.00898 ## TweakPsiSubtree 0 138 101 / 347 = 0.29107 0.00842 ## TweakPsiSegment 1 179 108 / 394 = 0.27411 0.00969 ## TweakPsiPhiSubtree 29 134 77 / 232 = 0.33190 0.00574 ## TweakPsiPhiSegment 17 77 37 / 150 = 0.24667 0.00433 ## TweakHbondSubtree 2 82 51 / 219 = 0.23288 0.00536 ## TweakHbondSegment 2 69 31 / 159 = 0.19497 0.00443 ## TweakMultimer 59 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 43 33 / 86 = 0.38372 0.00117 ## FixOmega 0 0 0 / 55 = 0.00000 0.00000 ## Backrub 46 70 24 / 135 = 0.17778 0.00198 ## BigBackrub 23 23 9 / 82 = 0.10976 0.00173 ## OneRotamer 0 137 59 / 471 = 0.12527 0.00667 ## ClashingRotamer 1 2 0 / 62 = 0.00000 0.00000 ## ClusteredRotamer 10 4 2 / 78 = 0.02564 0.00148 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 127 = 0.00787 0.00021 ## CloseGap 0 18 6 / 213 = 0.02817 0.00766 ## HealGap 0 7 2 / 141 = 0.01418 0.00109 ## MoveGap 0 0 0 / 49 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 128 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 59 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 126 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 51 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 291 = 0.00000 0.00000 ## CrossOver 0 0 0 / 58 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 56 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 66 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)D434 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPhi removed gap before (T0547)L116 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPhi removed gap before (T0547)G604 # TweakPsiPhi removed gap before (T0547)K28 # TweakPhi removed gap before (T0547)F73 # TweakPhi removed gap before (T0547)L418 # TweakPsiSubtree removed gap before (T0547)P52 # TweakPsiPhi removed gap before (T0547)I382 # TweakPhi removed gap before (T0547)G198 # TweakPsiSubtree removed gap before (T0547)V131 # TweakPhi removed gap before (T0547)E488 # TweakPsiSubtree removed gap before (T0547)A251 # TweakPsiPhi removed gap before (T0547)I302 # TweakPhi removed gap before (T0547)E561 # TweakPhi removed gap before (T0547)L100 # TweakPsiSubtree removed gap before (T0547)K171 # TweakPsiSubtree removed gap before (T0547)L391 # TweakPsiSubtree removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)A195 # TweakPsiPhi removed gap before (T0547)D564 # TweakPsiPhi removed gap before (T0547)F73 # TweakPsiSubtree removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)L218 # TweakPhi removed gap before (T0547)L499 # TweakPsiSubtree removed gap before (T0547)F227 # TweakPhi removed gap before (T0547)K493 # TweakPsiPhi removed gap before (T0547)C483 # TweakPhi removed gap before (T0547)F232 # TweakPsiSubtree removed gap before (T0547)G198 # TweakPsiPhi removed gap before (T0547)N253 # TweakPsiSubtree removed gap before (T0547)L529 # TweakPsiSubtree removed gap before (T0547)I269 # TweakPhi removed gap before (T0547)D383 # generation 56: best score out of 40: T0547.try1-opt2 211.20615 cost/residue, 909 clashes 0.13721 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 71 38 / 179 = 0.21229 0.00477 ## JiggleSubtree 0 37 25 / 265 = 0.09434 0.00788 ## JiggleSegment 2 37 25 / 268 = 0.09328 0.00723 ## OptSubtree 0 0 0 / 66 = 0.00000 0.00000 ## OptSegment 0 0 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 54 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 61 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 53 = 0.00000 0.00000 ## TweakPhiSubtree 11 145 92 / 317 = 0.29022 0.00832 ## TweakPhiSegment 23 197 127 / 371 = 0.34232 0.00906 ## TweakPsiSubtree 0 141 104 / 354 = 0.29379 0.00842 ## TweakPsiSegment 1 181 110 / 402 = 0.27363 0.00951 ## TweakPsiPhiSubtree 31 135 78 / 235 = 0.33191 0.00568 ## TweakPsiPhiSegment 17 81 42 / 156 = 0.26923 0.00450 ## TweakHbondSubtree 2 82 52 / 225 = 0.23111 0.00522 ## TweakHbondSegment 2 72 32 / 167 = 0.19162 0.00430 ## TweakMultimer 60 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 45 34 / 90 = 0.37778 0.00112 ## FixOmega 0 0 0 / 56 = 0.00000 0.00000 ## Backrub 46 70 24 / 137 = 0.17518 0.00195 ## BigBackrub 23 24 9 / 83 = 0.10843 0.00171 ## OneRotamer 0 139 59 / 486 = 0.12140 0.00646 ## ClashingRotamer 1 2 0 / 62 = 0.00000 0.00000 ## ClusteredRotamer 10 4 2 / 80 = 0.02500 0.00144 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 129 = 0.00775 0.00020 ## CloseGap 0 18 6 / 215 = 0.02791 0.00759 ## HealGap 0 7 2 / 141 = 0.01418 0.00109 ## MoveGap 0 0 0 / 49 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 128 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 59 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 127 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 52 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 293 = 0.00000 0.00000 ## CrossOver 0 0 0 / 58 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 56 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 67 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)T207 # TweakPsiSubtree removed gap before (T0547)N443 # TweakPhi removed gap before (T0547)A195 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)E507 # TweakPhi removed gap before (T0547)G455 # TweakPhi removed gap before (T0547)L523 # TweakPsiPhi removed gap before (T0547)N603 # TweakPhi removed gap before (T0547)L497 # TweakPsiPhi removed gap before (T0547)E257 # TweakPhi removed gap before (T0547)A189 # TweakPhi removed gap before (T0547)E535 # TweakPhi removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)G181 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F510 # TweakPhi removed gap before (T0547)K607 # TweakPsiPhi removed gap before (T0547)G455 # TweakPsiSubtree removed gap before (T0547)E470 # TweakPhi removed gap before (T0547)L275 # TweakPsiSubtree removed gap before (T0547)H591 # TweakPhi removed gap before (T0547)K135 # TweakPhi removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)D572 # TweakPsiSubtree removed gap before (T0547)D401 # TweakPsiPhi removed gap before (T0547)V442 # TweakPhi removed gap before (T0547)H591 # TweakPhi removed gap before (T0547)A170 # TweakPsiPhi removed gap before (T0547)I23 # TweakPsiSubtree removed gap before (T0547)Q424 # TweakPhi removed gap before (T0547)N124 # TweakPhi removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)I129 # TweakPhi removed gap before (T0547)Y75 # TweakPsiSubtree removed gap before (T0547)S202 # TweakPhi removed gap before (T0547)D364 # TweakPsiSubtree removed gap before (T0547)I412 # TweakPsiPhi removed gap before (T0547)G322 # TweakPsiPhi removed gap before (T0547)A330 # TweakPsiSubtree removed gap before (T0547)H151 # TweakPsiSubtree removed gap before (T0547)D298 # generation 57: best score out of 40: T0547.try1-opt2 211.19257 cost/residue, 909 clashes 0.13720 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 71 38 / 184 = 0.20652 0.00464 ## JiggleSubtree 1 37 25 / 268 = 0.09328 0.00779 ## JiggleSegment 2 37 25 / 271 = 0.09225 0.00715 ## OptSubtree 0 0 0 / 66 = 0.00000 0.00000 ## OptSegment 0 0 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 54 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 61 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 54 = 0.00000 0.00000 ## TweakPhiSubtree 12 148 95 / 326 = 0.29141 0.00822 ## TweakPhiSegment 23 203 131 / 380 = 0.34474 0.00900 ## TweakPsiSubtree 0 142 105 / 361 = 0.29086 0.00828 ## TweakPsiSegment 1 186 113 / 409 = 0.27628 0.00938 ## TweakPsiPhiSubtree 31 138 80 / 240 = 0.33333 0.00572 ## TweakPsiPhiSegment 18 83 43 / 160 = 0.26875 0.00456 ## TweakHbondSubtree 3 82 52 / 228 = 0.22807 0.00515 ## TweakHbondSegment 2 75 33 / 172 = 0.19186 0.00430 ## TweakMultimer 61 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 46 34 / 92 = 0.36957 0.00110 ## FixOmega 0 0 0 / 56 = 0.00000 0.00000 ## Backrub 47 70 24 / 139 = 0.17266 0.00192 ## BigBackrub 23 24 9 / 89 = 0.10112 0.00159 ## OneRotamer 0 140 59 / 493 = 0.11968 0.00637 ## ClashingRotamer 1 2 0 / 63 = 0.00000 0.00000 ## ClusteredRotamer 11 4 2 / 83 = 0.02410 0.00139 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 133 = 0.00752 0.00020 ## CloseGap 0 18 6 / 215 = 0.02791 0.00759 ## HealGap 0 7 2 / 142 = 0.01408 0.00108 ## MoveGap 0 0 0 / 49 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 130 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 60 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 127 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 53 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 297 = 0.00000 0.00000 ## CrossOver 0 0 0 / 59 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 59 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 68 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)G524 # Can't patch backbone between (T0547)E505 and (T0547)K506 because distance= 3.706 not near ideal 3.804 # TweakPsiPhi removed gap before (T0547)L375 # TweakPsiSubtree removed gap before (T0547)G199 # TweakPsiSubtree removed gap before (T0547)E314 # TweakPhi removed gap before (T0547)H591 # TweakPsiPhi removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)V82 # TweakPhi removed gap before (T0547)A276 # TweakPsiPhi removed gap before (T0547)N541 # TweakPsiPhi removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)E457 # TweakPhi removed gap before (T0547)G192 # TweakPhi removed gap before (T0547)A30 # TweakPsiSubtree removed gap before (T0547)I23 # TweakPsiPhi removed gap before (T0547)K286 # TweakPsiPhi removed gap before (T0547)G74 # TweakPsiPhi removed gap before (T0547)A569 # TweakPhi removed gap before (T0547)S236 # TweakPsiSubtree removed gap before (T0547)N284 # TweakPsiSubtree removed gap before (T0547)G252 # TweakPhi removed gap before (T0547)A569 # TweakPhi removed gap before (T0547)E595 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPhi removed gap before (T0547)E158 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPsiSubtree removed gap before (T0547)T409 # TweakPsiPhi removed gap before (T0547)F460 # TweakPsiPhi removed gap before (T0547)E148 # TweakPhi removed gap before (T0547)Y491 # TweakPhi removed gap before (T0547)S112 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPsiPhi removed gap before (T0547)A307 # TweakPhi removed gap before (T0547)G455 # TweakPsiPhi removed gap before (T0547)R173 # TweakPsiPhi removed gap before (T0547)V522 # TweakPsiSubtree removed gap before (T0547)L557 # TweakPhi removed gap before (T0547)A327 # TweakPhi removed gap before (T0547)I34 # TweakPsiSubtree removed gap before (T0547)E12 # TweakPsiSubtree removed gap before (T0547)V184 # TweakPsiPhi removed gap before (T0547)A268 # generation 58: best score out of 40: T0547.try1-opt2 211.13583 cost/residue, 907 clashes 0.13698 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 72 39 / 187 = 0.20856 0.00457 ## JiggleSubtree 1 38 26 / 274 = 0.09489 0.00762 ## JiggleSegment 2 37 25 / 275 = 0.09091 0.00705 ## OptSubtree 0 0 0 / 67 = 0.00000 0.00000 ## OptSegment 0 0 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 55 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 61 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 55 = 0.00000 0.00000 ## TweakPhiSubtree 12 149 95 / 332 = 0.28614 0.00808 ## TweakPhiSegment 24 206 133 / 387 = 0.34367 0.00898 ## TweakPsiSubtree 0 144 105 / 366 = 0.28689 0.00817 ## TweakPsiSegment 1 188 113 / 420 = 0.26905 0.00913 ## TweakPsiPhiSubtree 31 140 82 / 249 = 0.32932 0.00555 ## TweakPsiPhiSegment 20 87 44 / 167 = 0.26347 0.00453 ## TweakHbondSubtree 3 83 53 / 231 = 0.22944 0.00542 ## TweakHbondSegment 2 78 36 / 179 = 0.20112 0.00423 ## TweakMultimer 62 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 47 34 / 94 = 0.36170 0.00108 ## FixOmega 0 0 0 / 57 = 0.00000 0.00000 ## Backrub 47 70 24 / 140 = 0.17143 0.00191 ## BigBackrub 23 26 10 / 91 = 0.10989 0.00185 ## OneRotamer 0 140 59 / 500 = 0.11800 0.00628 ## ClashingRotamer 1 2 0 / 64 = 0.00000 0.00000 ## ClusteredRotamer 11 4 2 / 85 = 0.02353 0.00135 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 135 = 0.00741 0.00019 ## CloseGap 0 19 6 / 216 = 0.02778 0.00756 ## HealGap 0 7 2 / 144 = 0.01389 0.00107 ## MoveGap 0 0 0 / 50 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 130 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 60 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 127 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 55 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 301 = 0.00000 0.00000 ## CrossOver 0 0 0 / 59 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 59 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 69 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)D501 # TweakPhi removed gap before (T0547)K311 # TweakPhi removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)V331 # TweakPsiSubtree removed gap before (T0547)V35 # TweakPsiPhi removed gap before (T0547)N11 # TweakPhi removed gap before (T0547)I62 # TweakPsiSubtree removed gap before (T0547)L38 # TweakPsiSubtree removed gap before (T0547)E546 # TweakPhi removed gap before (T0547)N105 # TweakPsiPhi removed gap before (T0547)I23 # TweakPsiSubtree removed gap before (T0547)F453 # TweakPsiPhi removed gap before (T0547)D393 # TweakPhi removed gap before (T0547)Q309 # TweakPsiPhi removed gap before (T0547)I31 # TweakPsiSubtree removed gap before (T0547)I167 # TweakPhi removed gap before (T0547)L523 # TweakPsiPhi removed gap before (T0547)D503 # TweakPhi removed gap before (T0547)R50 # TweakPsiPhi removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)A119 # TweakPsiPhi removed gap before (T0547)L418 # TweakPsiPhi removed gap before (T0547)L511 # TweakPsiSubtree removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)Y63 # TweakPhi removed gap before (T0547)G455 # TweakPhi removed gap before (T0547)L54 # TweakPhi removed gap before (T0547)D428 # TweakPhi removed gap before (T0547)L224 # TweakPhi removed gap before (T0547)E320 # TweakPhi removed gap before (T0547)E72 # TweakPhi removed gap before (T0547)L523 # TweakPsiPhi removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)R323 # TweakPhi removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)T228 # TweakPhi removed gap before (T0547)D572 # TweakPsiPhi removed gap before (T0547)N132 # TweakPhi removed gap before (T0547)I609 # TweakPsiPhi removed gap before (T0547)G45 # TweakPsiPhi removed gap before (T0547)G235 # TweakPsiSubtree removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPhi removed gap before (T0547)S579 # generation 59: best score out of 40: T0547.try1-opt2 211.08900 cost/residue, 907 clashes 0.13655 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 73 39 / 190 = 0.20526 0.00449 ## JiggleSubtree 1 38 26 / 277 = 0.09386 0.00754 ## JiggleSegment 2 37 25 / 278 = 0.08993 0.00697 ## OptSubtree 0 0 0 / 68 = 0.00000 0.00000 ## OptSegment 0 0 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 55 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 64 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 55 = 0.00000 0.00000 ## TweakPhiSubtree 14 154 98 / 343 = 0.28571 0.00785 ## TweakPhiSegment 26 212 137 / 401 = 0.34165 0.00872 ## TweakPsiSubtree 0 146 107 / 370 = 0.28919 0.00837 ## TweakPsiSegment 1 190 115 / 426 = 0.26995 0.00920 ## TweakPsiPhiSubtree 31 142 83 / 252 = 0.32937 0.00559 ## TweakPsiPhiSegment 20 92 47 / 176 = 0.26705 0.00455 ## TweakHbondSubtree 3 83 53 / 237 = 0.22363 0.00528 ## TweakHbondSegment 2 79 37 / 186 = 0.19892 0.00409 ## TweakMultimer 62 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 47 34 / 95 = 0.35789 0.00107 ## FixOmega 0 0 0 / 57 = 0.00000 0.00000 ## Backrub 47 70 24 / 140 = 0.17143 0.00191 ## BigBackrub 23 26 10 / 96 = 0.10417 0.00176 ## OneRotamer 0 140 59 / 505 = 0.11683 0.00622 ## ClashingRotamer 1 2 0 / 64 = 0.00000 0.00000 ## ClusteredRotamer 11 4 2 / 89 = 0.02247 0.00129 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 138 = 0.00725 0.00019 ## CloseGap 0 19 6 / 216 = 0.02778 0.00756 ## HealGap 0 8 3 / 145 = 0.02069 0.00123 ## MoveGap 0 0 0 / 51 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 131 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 60 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 129 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 55 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 303 = 0.00000 0.00000 ## CrossOver 0 0 0 / 59 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 59 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 71 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)I306 # TweakPsiPhi removed gap before (T0547)G512 # TweakPsiPhi removed gap before (T0547)I570 # TweakPhi removed gap before (T0547)S368 # TweakPhi removed gap before (T0547)N124 # TweakPsiSubtree removed gap before (T0547)N404 # TweakPsiSubtree removed gap before (T0547)I62 # TweakPhi removed gap before (T0547)I350 # TweakPsiPhi removed gap before (T0547)G199 # TweakPsiSubtree removed gap before (T0547)L420 # TweakPhi removed gap before (T0547)S287 # TweakPhi removed gap before (T0547)Y75 # TweakPhi removed gap before (T0547)K28 # TweakPsiSubtree removed gap before (T0547)A327 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPsiSubtree removed gap before (T0547)T534 # TweakPsiSubtree removed gap before (T0547)A296 # TweakPhi removed gap before (T0547)G252 # TweakPsiPhi removed gap before (T0547)G512 # TweakPhi removed gap before (T0547)N18 # TweakPsiSubtree removed gap before (T0547)N123 # TweakPsiPhi removed gap before (T0547)K113 # TweakPhi removed gap before (T0547)A276 # TweakPsiPhi removed gap before (T0547)K57 # TweakPsiPhi removed gap before (T0547)L97 # TweakPsiSubtree removed gap before (T0547)E457 # TweakPsiSubtree removed gap before (T0547)I592 # TweakPsiPhi removed gap before (T0547)Y545 # TweakPsiPhi removed gap before (T0547)L234 # TweakPsiSubtree removed gap before (T0547)Y440 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)S321 # TweakPsiPhi removed gap before (T0547)K423 # TweakPsiSubtree removed gap before (T0547)K415 # TweakPhi removed gap before (T0547)N355 # generation 60: best score out of 40: T0547.try1-opt2 210.73877 cost/residue, 901 clashes 0.13563 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 74 40 / 193 = 0.20725 0.00450 ## JiggleSubtree 1 38 26 / 282 = 0.09220 0.00741 ## JiggleSegment 2 37 25 / 283 = 0.08834 0.00685 ## OptSubtree 0 0 0 / 68 = 0.00000 0.00000 ## OptSegment 0 1 1 / 53 = 0.01887 0.00661 ## OptAllSegments 0 0 0 / 56 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 64 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 57 = 0.00000 0.00000 ## TweakPhiSubtree 15 158 101 / 351 = 0.28775 0.00779 ## TweakPhiSegment 26 213 137 / 404 = 0.33911 0.00865 ## TweakPsiSubtree 0 149 108 / 379 = 0.28496 0.00821 ## TweakPsiSegment 1 191 116 / 430 = 0.26977 0.00914 ## TweakPsiPhiSubtree 31 145 84 / 257 = 0.32685 0.00552 ## TweakPsiPhiSegment 21 94 49 / 183 = 0.26776 0.00439 ## TweakHbondSubtree 3 84 54 / 244 = 0.22131 0.00525 ## TweakHbondSegment 2 83 38 / 193 = 0.19689 0.00398 ## TweakMultimer 62 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 48 34 / 96 = 0.35417 0.00105 ## FixOmega 0 0 0 / 57 = 0.00000 0.00000 ## Backrub 48 72 25 / 144 = 0.17361 0.00198 ## BigBackrub 23 26 10 / 99 = 0.10101 0.00170 ## OneRotamer 0 142 60 / 511 = 0.11742 0.00627 ## ClashingRotamer 1 2 0 / 65 = 0.00000 0.00000 ## ClusteredRotamer 11 4 2 / 91 = 0.02198 0.00127 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 140 = 0.00714 0.00019 ## CloseGap 0 19 6 / 216 = 0.02778 0.00756 ## HealGap 0 8 3 / 149 = 0.02013 0.00119 ## MoveGap 0 0 0 / 51 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 132 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 60 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 130 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 55 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 306 = 0.00000 0.00000 ## CrossOver 0 0 0 / 61 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 61 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 71 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)F134 # TweakPsiPhi removed gap before (T0547)N132 # TweakPhi removed gap before (T0547)G133 # TweakPhi removed gap before (T0547)I241 # TweakPsiPhi removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)T534 # TweakPhi removed gap before (T0547)F73 # TweakPhi removed gap before (T0547)A427 # TweakPhi removed gap before (T0547)V35 # TweakPsiSubtree removed gap before (T0547)H329 # TweakPhi removed gap before (T0547)L182 # TweakPsiSubtree removed gap before (T0547)S341 # TweakPhi removed gap before (T0547)S579 # TweakPsiSubtree removed gap before (T0547)L418 # TweakPsiPhi removed gap before (T0547)I254 # TweakPsiPhi removed gap before (T0547)G19 # TweakPhi removed gap before (T0547)N575 # TweakPsiPhi removed gap before (T0547)K99 # TweakPhi removed gap before (T0547)S539 # TweakPhi removed gap before (T0547)K260 # generation 61: best score out of 40: T0547.try1-opt2 210.73877 cost/residue, 901 clashes 0.13563 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 75 40 / 196 = 0.20408 0.00444 ## JiggleSubtree 1 39 26 / 286 = 0.09091 0.00730 ## JiggleSegment 2 37 25 / 284 = 0.08803 0.00682 ## OptSubtree 0 0 0 / 68 = 0.00000 0.00000 ## OptSegment 0 1 1 / 95 = 0.01053 0.00369 ## OptAllSegments 0 0 0 / 57 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 64 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 57 = 0.00000 0.00000 ## TweakPhiSubtree 15 160 101 / 356 = 0.28371 0.00768 ## TweakPhiSegment 26 219 138 / 411 = 0.33577 0.00859 ## TweakPsiSubtree 0 149 108 / 380 = 0.28421 0.00818 ## TweakPsiSegment 1 194 117 / 433 = 0.27021 0.00908 ## TweakPsiPhiSubtree 31 147 85 / 259 = 0.32819 0.00552 ## TweakPsiPhiSegment 22 96 49 / 186 = 0.26344 0.00432 ## TweakHbondSubtree 3 85 55 / 245 = 0.22449 0.00530 ## TweakHbondSegment 2 84 39 / 194 = 0.20103 0.00399 ## TweakMultimer 62 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 48 34 / 96 = 0.35417 0.00105 ## FixOmega 0 0 0 / 59 = 0.00000 0.00000 ## Backrub 48 75 28 / 147 = 0.19048 0.00227 ## BigBackrub 23 26 10 / 99 = 0.10101 0.00170 ## OneRotamer 0 144 60 / 515 = 0.11650 0.00622 ## ClashingRotamer 1 2 0 / 67 = 0.00000 0.00000 ## ClusteredRotamer 11 4 2 / 93 = 0.02151 0.00124 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 141 = 0.00709 0.00019 ## CloseGap 0 19 6 / 216 = 0.02778 0.00756 ## HealGap 0 8 3 / 150 = 0.02000 0.00118 ## MoveGap 0 0 0 / 52 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 132 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 130 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 59 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 308 = 0.00000 0.00000 ## CrossOver 0 0 0 / 61 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 63 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 72 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)K267 # TweakPsiSubtree removed gap before (T0547)A119 # TweakPsiPhi removed gap before (T0547)K311 # TweakPsiPhi removed gap before (T0547)V94 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPsiSubtree removed gap before (T0547)E138 # TweakPsiPhi removed gap before (T0547)L606 # TweakPhi removed gap before (T0547)S492 # TweakPsiPhi removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)L244 # TweakPsiPhi removed gap before (T0547)L217 # TweakPsiSubtree removed gap before (T0547)K28 # TweakPhi removed gap before (T0547)L155 # TweakPsiPhi removed gap before (T0547)R474 # TweakPsiSubtree removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)Y83 # TweakPsiSubtree removed gap before (T0547)F453 # TweakPhi removed gap before (T0547)Y396 # TweakPhi removed gap before (T0547)E285 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPsiSubtree removed gap before (T0547)Q226 # TweakPhi removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)E257 # TweakPsiSubtree removed gap before (T0547)I609 # TweakPsiPhi removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)V299 # TweakPsiPhi removed gap before (T0547)V98 # TweakPhi removed gap before (T0547)G594 # TweakPsiPhi removed gap before (T0547)E314 # TweakPsiPhi removed gap before (T0547)K203 # TweakPsiPhi removed gap before (T0547)D564 # generation 62: best score out of 40: T0547.try1-opt2 210.66029 cost/residue, 906 clashes 0.13595 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 77 41 / 198 = 0.20707 0.00451 ## JiggleSubtree 1 40 26 / 288 = 0.09028 0.00725 ## JiggleSegment 2 38 25 / 287 = 0.08711 0.00675 ## OptSubtree 0 0 0 / 68 = 0.00000 0.00000 ## OptSegment 0 1 1 / 102 = 0.00980 0.00343 ## OptAllSegments 0 0 0 / 58 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 66 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 57 = 0.00000 0.00000 ## TweakPhiSubtree 15 160 102 / 359 = 0.28412 0.00761 ## TweakPhiSegment 26 223 139 / 418 = 0.33254 0.00845 ## TweakPsiSubtree 0 149 109 / 385 = 0.28312 0.00811 ## TweakPsiSegment 1 199 118 / 443 = 0.26637 0.00889 ## TweakPsiPhiSubtree 32 150 87 / 267 = 0.32584 0.00540 ## TweakPsiPhiSegment 23 101 53 / 192 = 0.27604 0.00451 ## TweakHbondSubtree 3 86 56 / 251 = 0.22311 0.00553 ## TweakHbondSegment 2 87 42 / 201 = 0.20896 0.00527 ## TweakMultimer 62 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 49 34 / 98 = 0.34694 0.00103 ## FixOmega 0 0 0 / 60 = 0.00000 0.00000 ## Backrub 48 77 29 / 150 = 0.19333 0.00226 ## BigBackrub 23 26 11 / 101 = 0.10891 0.00170 ## OneRotamer 0 147 61 / 524 = 0.11641 0.00613 ## ClashingRotamer 1 2 0 / 68 = 0.00000 0.00000 ## ClusteredRotamer 13 4 2 / 96 = 0.02083 0.00120 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 142 = 0.00704 0.00019 ## CloseGap 0 19 6 / 217 = 0.02765 0.00752 ## HealGap 0 8 3 / 152 = 0.01974 0.00117 ## MoveGap 0 0 0 / 53 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 133 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 130 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 60 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 310 = 0.00000 0.00000 ## CrossOver 0 0 0 / 61 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 64 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 72 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)N305 # TweakPhi removed gap before (T0547)L499 # TweakPsiPhi removed gap before (T0547)G42 # TweakPhi removed gap before (T0547)A69 # TweakPsiPhi removed gap before (T0547)L362 # TweakPsiPhi removed gap before (T0547)N18 # TweakPsiSubtree removed gap before (T0547)K493 # TweakPhi removed gap before (T0547)Q400 # TweakPsiPhi removed gap before (T0547)I302 # TweakPsiPhi removed gap before (T0547)A268 # TweakPhi removed gap before (T0547)E285 # TweakPsiSubtree removed gap before (T0547)V547 # TweakPhi removed gap before (T0547)L54 # TweakPsiPhi removed gap before (T0547)H384 # TweakPhi removed gap before (T0547)L303 # TweakPsiPhi removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)G322 # TweakPsiSubtree removed gap before (T0547)D562 # TweakPhi removed gap before (T0547)L218 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E26 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)K415 # TweakPhi removed gap before (T0547)K99 # TweakPhi removed gap before (T0547)Y491 # TweakPsiPhi removed gap before (T0547)I478 # TweakPsiSubtree removed gap before (T0547)A326 # TweakPsiPhi removed gap before (T0547)V442 # TweakPsiPhi removed gap before (T0547)I193 # TweakPsiPhi removed gap before (T0547)E521 # generation 63: best score out of 40: T0547.try1-opt2 210.60434 cost/residue, 905 clashes 0.13595 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 79 42 / 205 = 0.20488 0.00436 ## JiggleSubtree 1 40 26 / 290 = 0.08966 0.00720 ## JiggleSegment 2 38 25 / 290 = 0.08621 0.00668 ## OptSubtree 0 0 0 / 68 = 0.00000 0.00000 ## OptSegment 0 1 1 / 109 = 0.00917 0.00321 ## OptAllSegments 0 0 0 / 58 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 66 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 57 = 0.00000 0.00000 ## TweakPhiSubtree 15 162 102 / 364 = 0.28022 0.00751 ## TweakPhiSegment 26 224 141 / 422 = 0.33412 0.00838 ## TweakPsiSubtree 0 151 111 / 391 = 0.28389 0.00812 ## TweakPsiSegment 1 199 118 / 445 = 0.26517 0.00885 ## TweakPsiPhiSubtree 33 154 94 / 276 = 0.34058 0.00568 ## TweakPsiPhiSegment 23 104 54 / 196 = 0.27551 0.00444 ## TweakHbondSubtree 3 87 56 / 260 = 0.21538 0.00534 ## TweakHbondSegment 2 92 45 / 215 = 0.20930 0.00559 ## TweakMultimer 63 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 52 34 / 101 = 0.33663 0.00100 ## FixOmega 0 0 0 / 60 = 0.00000 0.00000 ## Backrub 49 78 30 / 154 = 0.19481 0.00227 ## BigBackrub 23 28 12 / 103 = 0.11650 0.00228 ## OneRotamer 0 149 62 / 533 = 0.11632 0.00613 ## ClashingRotamer 1 2 0 / 68 = 0.00000 0.00000 ## ClusteredRotamer 13 4 2 / 97 = 0.02062 0.00119 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 144 = 0.00694 0.00018 ## CloseGap 0 19 6 / 217 = 0.02765 0.00752 ## HealGap 0 8 3 / 153 = 0.01961 0.00116 ## MoveGap 0 0 0 / 53 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 133 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 131 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 60 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 311 = 0.00000 0.00000 ## CrossOver 0 0 0 / 62 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 65 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 74 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)H187 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)T413 # TweakPsiSubtree removed gap before (T0547)L523 # TweakPhi removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)I157 # TweakPhi removed gap before (T0547)K311 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L606 # TweakPsiSubtree removed gap before (T0547)S112 # TweakPsiPhi removed gap before (T0547)R293 # TweakPhi removed gap before (T0547)T473 # TweakPsiPhi removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)H233 # TweakPhi removed gap before (T0547)E552 # TweakPhi removed gap before (T0547)E158 # TweakPsiPhi removed gap before (T0547)Q237 # TweakPhi removed gap before (T0547)E138 # TweakPsiPhi removed gap before (T0547)A268 # TweakPhi removed gap before (T0547)A147 # TweakPsiPhi removed gap before (T0547)L160 # TweakPhi removed gap before (T0547)A170 # TweakPsiPhi removed gap before (T0547)L108 # TweakPsiPhi removed gap before (T0547)N508 # TweakPsiSubtree removed gap before (T0547)D452 # TweakPsiPhi removed gap before (T0547)N141 # TweakPhi removed gap before (T0547)S236 # TweakPsiSubtree removed gap before (T0547)Q424 # TweakPsiPhi removed gap before (T0547)V191 # TweakPhi removed gap before (T0547)H231 # TweakPsiSubtree removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)N328 # TweakPhi removed gap before (T0547)K102 # generation 64: best score out of 40: T0547.try1-opt2 210.58372 cost/residue, 906 clashes 0.13590 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 82 44 / 209 = 0.21053 0.00449 ## JiggleSubtree 1 40 26 / 293 = 0.08874 0.00713 ## JiggleSegment 2 38 25 / 293 = 0.08532 0.00661 ## OptSubtree 0 0 0 / 69 = 0.00000 0.00000 ## OptSegment 0 1 1 / 118 = 0.00847 0.00297 ## OptAllSegments 0 0 0 / 58 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 67 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 57 = 0.00000 0.00000 ## TweakPhiSubtree 15 167 102 / 373 = 0.27346 0.00733 ## TweakPhiSegment 26 226 144 / 427 = 0.33724 0.00830 ## TweakPsiSubtree 0 154 114 / 399 = 0.28571 0.00806 ## TweakPsiSegment 1 202 120 / 449 = 0.26726 0.00877 ## TweakPsiPhiSubtree 34 156 95 / 280 = 0.33929 0.00573 ## TweakPsiPhiSegment 23 107 57 / 203 = 0.28079 0.00488 ## TweakHbondSubtree 3 88 56 / 263 = 0.21293 0.00528 ## TweakHbondSegment 2 93 46 / 218 = 0.21101 0.00554 ## TweakMultimer 64 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 53 34 / 103 = 0.33010 0.00098 ## FixOmega 0 0 0 / 60 = 0.00000 0.00000 ## Backrub 51 79 31 / 159 = 0.19497 0.00221 ## BigBackrub 24 29 13 / 106 = 0.12264 0.00243 ## OneRotamer 0 150 62 / 537 = 0.11546 0.00609 ## ClashingRotamer 1 2 0 / 69 = 0.00000 0.00000 ## ClusteredRotamer 13 4 2 / 98 = 0.02041 0.00118 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 146 = 0.00685 0.00018 ## CloseGap 0 19 6 / 218 = 0.02752 0.00749 ## HealGap 0 8 3 / 158 = 0.01899 0.00112 ## MoveGap 0 0 0 / 54 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 136 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 133 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 60 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 312 = 0.00000 0.00000 ## CrossOver 0 0 0 / 64 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 66 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 76 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)V21 # TweakPsiSubtree removed gap before (T0547)S236 # TweakPsiPhi removed gap before (T0547)N11 # TweakPsiSubtree removed gap before (T0547)K352 # TweakPhi removed gap before (T0547)S280 # TweakPsiSubtree removed gap before (T0547)I489 # TweakPhi removed gap before (T0547)M120 # Can't patch backbone between (T0547)E505 and (T0547)K506 because distance= 3.706 not near ideal 3.804 # TweakPsiPhi removed gap before (T0547)S287 # TweakPsiSubtree removed gap before (T0547)K589 # TweakPsiSubtree removed gap before (T0547)N603 # TweakPhi removed gap before (T0547)K245 # TweakPsiPhi removed gap before (T0547)N124 # TweakPsiSubtree removed gap before (T0547)Q400 # TweakPsiSubtree removed gap before (T0547)G133 # TweakPsiPhi removed gap before (T0547)G19 # TweakPsiSubtree removed gap before (T0547)I550 # TweakPsiPhi removed gap before (T0547)L499 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K506 # TweakPsiSubtree removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)L234 # TweakPsiPhi removed gap before (T0547)E172 # TweakPsiPhi removed gap before (T0547)D360 # TweakPsiPhi removed gap before (T0547)D484 # TweakPsiPhi removed gap before (T0547)S445 # TweakPhi removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)I412 # TweakPhi removed gap before (T0547)N541 # TweakPsiPhi removed gap before (T0547)D501 # TweakPsiSubtree removed gap before (T0547)Y90 # generation 65: best score out of 40: T0547.try1-opt2 210.51447 cost/residue, 896 clashes 0.13565 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 84 45 / 216 = 0.20833 0.00437 ## JiggleSubtree 1 41 27 / 296 = 0.09122 0.00740 ## JiggleSegment 2 38 25 / 295 = 0.08475 0.00657 ## OptSubtree 0 0 0 / 71 = 0.00000 0.00000 ## OptSegment 0 1 1 / 122 = 0.00820 0.00287 ## OptAllSegments 0 0 0 / 59 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 70 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 57 = 0.00000 0.00000 ## TweakPhiSubtree 15 168 102 / 375 = 0.27200 0.00729 ## TweakPhiSegment 26 228 146 / 431 = 0.33875 0.00850 ## TweakPsiSubtree 0 157 116 / 406 = 0.28571 0.00799 ## TweakPsiSegment 1 206 123 / 455 = 0.27033 0.00875 ## TweakPsiPhiSubtree 34 160 98 / 289 = 0.33910 0.00593 ## TweakPsiPhiSegment 24 109 57 / 209 = 0.27273 0.00474 ## TweakHbondSubtree 3 90 57 / 270 = 0.21111 0.00531 ## TweakHbondSegment 2 97 48 / 228 = 0.21053 0.00563 ## TweakMultimer 64 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 53 34 / 103 = 0.33010 0.00098 ## FixOmega 0 0 0 / 60 = 0.00000 0.00000 ## Backrub 51 79 31 / 162 = 0.19136 0.00217 ## BigBackrub 25 29 14 / 110 = 0.12727 0.00258 ## OneRotamer 0 153 64 / 546 = 0.11722 0.00609 ## ClashingRotamer 1 2 0 / 70 = 0.00000 0.00000 ## ClusteredRotamer 13 4 2 / 100 = 0.02000 0.00115 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 147 = 0.00680 0.00018 ## CloseGap 0 19 6 / 219 = 0.02740 0.00745 ## HealGap 0 8 3 / 158 = 0.01899 0.00112 ## MoveGap 0 0 0 / 54 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 136 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 134 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 60 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 315 = 0.00000 0.00000 ## CrossOver 0 0 0 / 64 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 66 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 76 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)A518 # TweakPsiPhi removed gap before (T0547)V300 # TweakPhi removed gap before (T0547)I8 # TweakPhi removed gap before (T0547)L108 # TweakPsiSubtree removed gap before (T0547)D466 # TweakPsiPhi removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)N443 # TweakPhi removed gap before (T0547)M229 # TweakPsiPhi removed gap before (T0547)R474 # TweakPsiSubtree removed gap before (T0547)K589 # TweakPhi removed gap before (T0547)L596 # TweakPhi removed gap before (T0547)S485 # TweakPsiPhi removed gap before (T0547)E546 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)E552 # TweakPhi removed gap before (T0547)A326 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)L557 # TweakPhi removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)Y90 # TweakPsiSubtree removed gap before (T0547)K177 # TweakPsiSubtree removed gap before (T0547)V300 # TweakPsiPhi removed gap before (T0547)E521 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)F204 # TweakPsiSubtree removed gap before (T0547)I550 # TweakPsiPhi removed gap before (T0547)S112 # generation 66: best score out of 40: T0547.try1-opt2 210.47461 cost/residue, 895 clashes 0.13567 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 85 45 / 219 = 0.20548 0.00431 ## JiggleSubtree 1 41 27 / 300 = 0.09000 0.00730 ## JiggleSegment 2 38 25 / 303 = 0.08251 0.00640 ## OptSubtree 0 0 0 / 72 = 0.00000 0.00000 ## OptSegment 0 1 1 / 126 = 0.00794 0.00278 ## OptAllSegments 0 0 0 / 59 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 70 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 57 = 0.00000 0.00000 ## TweakPhiSubtree 15 171 104 / 378 = 0.27513 0.00758 ## TweakPhiSegment 26 232 149 / 438 = 0.34018 0.00842 ## TweakPsiSubtree 0 161 119 / 414 = 0.28744 0.00786 ## TweakPsiSegment 1 209 126 / 461 = 0.27332 0.00867 ## TweakPsiPhiSubtree 34 161 98 / 294 = 0.33333 0.00583 ## TweakPsiPhiSegment 24 112 59 / 213 = 0.27700 0.00471 ## TweakHbondSubtree 3 92 58 / 273 = 0.21245 0.00529 ## TweakHbondSegment 2 98 48 / 236 = 0.20339 0.00544 ## TweakMultimer 64 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 54 34 / 105 = 0.32381 0.00096 ## FixOmega 0 0 0 / 60 = 0.00000 0.00000 ## Backrub 51 81 32 / 169 = 0.18935 0.00208 ## BigBackrub 28 29 14 / 114 = 0.12281 0.00249 ## OneRotamer 0 155 64 / 558 = 0.11470 0.00596 ## ClashingRotamer 1 2 0 / 70 = 0.00000 0.00000 ## ClusteredRotamer 13 4 2 / 100 = 0.02000 0.00115 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 148 = 0.00676 0.00018 ## CloseGap 0 19 6 / 221 = 0.02715 0.00739 ## HealGap 0 8 3 / 161 = 0.01863 0.00110 ## MoveGap 0 0 0 / 56 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 136 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 135 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 60 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 317 = 0.00000 0.00000 ## CrossOver 0 0 0 / 64 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 66 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 76 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L394 # TweakPsiPhi removed gap before (T0547)E308 # TweakPsiPhi removed gap before (T0547)G19 # TweakPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)P243 # TweakPsiPhi removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)M463 # TweakPhi removed gap before (T0547)L38 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)S555 # TweakPsiPhi removed gap before (T0547)I153 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)S387 # TweakPsiPhi removed gap before (T0547)R185 # TweakPhi removed gap before (T0547)I570 # TweakPhi removed gap before (T0547)D466 # TweakPsiPhi removed gap before (T0547)L385 # TweakPhi removed gap before (T0547)G273 # TweakPsiPhi removed gap before (T0547)R50 # TweakPhi removed gap before (T0547)V336 # TweakPhi removed gap before (T0547)E294 # TweakPsiPhi removed gap before (T0547)L97 # TweakPsiPhi removed gap before (T0547)N541 # TweakPsiPhi removed gap before (T0547)K17 # TweakPhi removed gap before (T0547)A307 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G604 # TweakPsiSubtree removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)L97 # TweakPsiSubtree removed gap before (T0547)N355 # TweakPhi removed gap before (T0547)K171 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPsiPhi removed gap before (T0547)R577 # TweakPsiPhi removed gap before (T0547)I609 # TweakPhi removed gap before (T0547)I269 # TweakPhi removed gap before (T0547)E158 # TweakPhi removed gap before (T0547)D383 # generation 67: best score out of 40: T0547.try1-opt2 210.45857 cost/residue, 895 clashes 0.13567 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 87 47 / 224 = 0.20982 0.00429 ## JiggleSubtree 1 41 27 / 307 = 0.08795 0.00714 ## JiggleSegment 2 39 26 / 306 = 0.08497 0.00658 ## OptSubtree 0 0 0 / 72 = 0.00000 0.00000 ## OptSegment 0 1 1 / 132 = 0.00758 0.00265 ## OptAllSegments 0 0 0 / 59 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 71 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 57 = 0.00000 0.00000 ## TweakPhiSubtree 15 175 106 / 387 = 0.27390 0.00745 ## TweakPhiSegment 27 233 150 / 446 = 0.33632 0.00828 ## TweakPsiSubtree 0 163 121 / 417 = 0.29017 0.00786 ## TweakPsiSegment 1 210 127 / 465 = 0.27312 0.00877 ## TweakPsiPhiSubtree 34 162 99 / 298 = 0.33221 0.00584 ## TweakPsiPhiSegment 27 118 63 / 224 = 0.28125 0.00501 ## TweakHbondSubtree 3 95 60 / 278 = 0.21583 0.00534 ## TweakHbondSegment 2 100 48 / 243 = 0.19753 0.00528 ## TweakMultimer 65 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 55 34 / 107 = 0.31776 0.00095 ## FixOmega 0 0 0 / 60 = 0.00000 0.00000 ## Backrub 53 83 32 / 171 = 0.18713 0.00206 ## BigBackrub 29 29 15 / 118 = 0.12712 0.00244 ## OneRotamer 0 155 64 / 564 = 0.11348 0.00590 ## ClashingRotamer 1 2 0 / 72 = 0.00000 0.00000 ## ClusteredRotamer 13 4 2 / 104 = 0.01923 0.00111 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 148 = 0.00676 0.00018 ## CloseGap 0 19 6 / 222 = 0.02703 0.00735 ## HealGap 0 8 3 / 161 = 0.01863 0.00110 ## MoveGap 0 0 0 / 56 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 138 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 62 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 135 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 60 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 319 = 0.00000 0.00000 ## CrossOver 0 0 0 / 64 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 66 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 77 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)G159 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPsiPhi removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)L155 # TweakPhi removed gap before (T0547)S372 # TweakPhi removed gap before (T0547)K57 # TweakPsiPhi removed gap before (T0547)F447 # TweakPsiSubtree removed gap before (T0547)S112 # TweakPhi removed gap before (T0547)R70 # TweakPsiPhi removed gap before (T0547)R39 # TweakPsiPhi removed gap before (T0547)L49 # TweakPhi removed gap before (T0547)N105 # TweakPsiSubtree removed gap before (T0547)P176 # TweakPsiSubtree removed gap before (T0547)L497 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)E561 # TweakPhi removed gap before (T0547)K76 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)E37 # TweakPhi removed gap before (T0547)N443 # TweakPsiPhi removed gap before (T0547)Q237 # TweakPsiPhi removed gap before (T0547)I333 # TweakPhi removed gap before (T0547)E346 # TweakPsiSubtree removed gap before (T0547)L186 # TweakPhi removed gap before (T0547)Y366 # TweakPhi removed gap before (T0547)E576 # TweakPsiPhi removed gap before (T0547)K415 # TweakPsiSubtree removed gap before (T0547)K68 # TweakPhi removed gap before (T0547)L391 # TweakPhi removed gap before (T0547)F460 # TweakPhi removed gap before (T0547)A427 # TweakPsiPhi removed gap before (T0547)I166 # TweakPsiSubtree removed gap before (T0547)I166 # TweakPsiSubtree removed gap before (T0547)G455 # TweakPsiPhi removed gap before (T0547)T534 # TweakPsiPhi removed gap before (T0547)Y104 # TweakPsiPhi removed gap before (T0547)N603 # TweakPhi removed gap before (T0547)E125 # generation 68: best score out of 40: T0547.try1-opt2 210.35818 cost/residue, 894 clashes 0.13532 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 87 47 / 228 = 0.20614 0.00421 ## JiggleSubtree 1 41 27 / 312 = 0.08654 0.00702 ## JiggleSegment 2 39 26 / 313 = 0.08307 0.00643 ## OptSubtree 0 0 0 / 73 = 0.00000 0.00000 ## OptSegment 0 1 1 / 135 = 0.00741 0.00259 ## OptAllSegments 0 0 0 / 60 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 71 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 57 = 0.00000 0.00000 ## TweakPhiSubtree 15 176 107 / 394 = 0.27157 0.00732 ## TweakPhiSegment 27 237 151 / 454 = 0.33260 0.00818 ## TweakPsiSubtree 0 164 122 / 421 = 0.28979 0.00780 ## TweakPsiSegment 1 213 129 / 472 = 0.27331 0.00871 ## TweakPsiPhiSubtree 37 165 100 / 306 = 0.32680 0.00579 ## TweakPsiPhiSegment 27 121 65 / 229 = 0.28384 0.00514 ## TweakHbondSubtree 3 97 62 / 282 = 0.21986 0.00558 ## TweakHbondSegment 2 103 49 / 251 = 0.19522 0.00551 ## TweakMultimer 71 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 56 35 / 108 = 0.32407 0.00099 ## FixOmega 0 0 0 / 60 = 0.00000 0.00000 ## Backrub 53 85 34 / 176 = 0.19318 0.00225 ## BigBackrub 31 29 15 / 119 = 0.12605 0.00242 ## OneRotamer 0 161 68 / 575 = 0.11826 0.00602 ## ClashingRotamer 1 2 0 / 72 = 0.00000 0.00000 ## ClusteredRotamer 13 4 2 / 104 = 0.01923 0.00111 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 148 = 0.00676 0.00018 ## CloseGap 0 19 6 / 223 = 0.02691 0.00732 ## HealGap 0 8 3 / 163 = 0.01840 0.00109 ## MoveGap 0 0 0 / 58 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 138 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 62 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 138 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 60 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 321 = 0.00000 0.00000 ## CrossOver 0 0 0 / 64 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 66 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 77 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)H53 # TweakPsiSubtree removed gap before (T0547)M261 # TweakPsiSubtree removed gap before (T0547)P356 # TweakPhi removed gap before (T0547)E138 # TweakPsiSubtree removed gap before (T0547)G77 # TweakPsiSubtree removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPsiPhi removed gap before (T0547)T239 # TweakPsiSubtree removed gap before (T0547)K310 # TweakPsiSubtree removed gap before (T0547)H187 # TweakPsiSubtree removed gap before (T0547)A476 # TweakPsiPhi removed gap before (T0547)W479 # TweakPsiPhi removed gap before (T0547)I538 # TweakPsiSubtree removed gap before (T0547)M229 # TweakPsiPhi removed gap before (T0547)R467 # TweakPsiSubtree removed gap before (T0547)G487 # TweakPsiPhi removed gap before (T0547)I169 # TweakPsiPhi removed gap before (T0547)E225 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K171 # TweakPhi removed gap before (T0547)E60 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V82 # TweakPhi removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)L515 # TweakPsiPhi removed gap before (T0547)I140 # TweakPhi removed gap before (T0547)I62 # TweakPsiPhi removed gap before (T0547)T534 # TweakPsiSubtree removed gap before (T0547)N67 # TweakPhi removed gap before (T0547)V131 # TweakPhi removed gap before (T0547)A405 # TweakPsiSubtree removed gap before (T0547)R185 # TweakPsiPhi removed gap before (T0547)T256 # TweakPsiSubtree removed gap before (T0547)G205 # TweakPhi removed gap before (T0547)E138 # TweakPsiPhi removed gap before (T0547)S321 # TweakPsiPhi removed gap before (T0547)N61 # TweakPsiSubtree removed gap before (T0547)E505 # generation 69: best score out of 40: T0547.try1-opt2 210.31323 cost/residue, 902 clashes 0.13480 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 87 47 / 229 = 0.20524 0.00419 ## JiggleSubtree 1 41 27 / 315 = 0.08571 0.00695 ## JiggleSegment 2 39 26 / 318 = 0.08176 0.00633 ## OptSubtree 0 0 0 / 73 = 0.00000 0.00000 ## OptSegment 0 1 1 / 137 = 0.00730 0.00256 ## OptAllSegments 0 0 0 / 61 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 71 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 58 = 0.00000 0.00000 ## TweakPhiSubtree 15 181 110 / 403 = 0.27295 0.00723 ## TweakPhiSegment 27 238 152 / 456 = 0.33333 0.00829 ## TweakPsiSubtree 0 168 124 / 428 = 0.28972 0.00777 ## TweakPsiSegment 1 215 130 / 480 = 0.27083 0.00858 ## TweakPsiPhiSubtree 37 170 104 / 314 = 0.33121 0.00597 ## TweakPsiPhiSegment 28 121 66 / 235 = 0.28085 0.00502 ## TweakHbondSubtree 3 100 65 / 293 = 0.22184 0.00558 ## TweakHbondSegment 2 104 49 / 254 = 0.19291 0.00545 ## TweakMultimer 72 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 56 35 / 109 = 0.32110 0.00098 ## FixOmega 0 0 0 / 60 = 0.00000 0.00000 ## Backrub 54 90 38 / 185 = 0.20541 0.00238 ## BigBackrub 32 29 15 / 122 = 0.12295 0.00236 ## OneRotamer 0 161 68 / 584 = 0.11644 0.00592 ## ClashingRotamer 1 2 0 / 72 = 0.00000 0.00000 ## ClusteredRotamer 13 4 2 / 105 = 0.01905 0.00110 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 148 = 0.00676 0.00018 ## CloseGap 0 19 6 / 224 = 0.02679 0.00729 ## HealGap 0 8 3 / 164 = 0.01829 0.00108 ## MoveGap 0 0 0 / 60 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 138 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 62 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 140 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 60 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 325 = 0.00000 0.00000 ## CrossOver 0 0 0 / 64 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 66 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 77 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)R402 # TweakPhi removed gap before (T0547)L186 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)H410 # TweakPsiPhi removed gap before (T0547)G604 # TweakPsiPhi removed gap before (T0547)S381 # TweakPsiPhi removed gap before (T0547)L182 # TweakPsiSubtree removed gap before (T0547)F51 # TweakPsiPhi removed gap before (T0547)Y396 # TweakPsiSubtree removed gap before (T0547)H384 # TweakPhi removed gap before (T0547)Y25 # TweakPhi removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)L523 # TweakPhi removed gap before (T0547)L186 # TweakPsiPhi removed gap before (T0547)E535 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPsiPhi removed gap before (T0547)L385 # TweakPsiPhi removed gap before (T0547)I6 # TweakPhi removed gap before (T0547)D434 # TweakPhi removed gap before (T0547)H591 # TweakPhi removed gap before (T0547)S197 # TweakPsiSubtree removed gap before (T0547)Q400 # TweakPsiPhi removed gap before (T0547)F51 # TweakPsiPhi removed gap before (T0547)Q237 # TweakPsiPhi removed gap before (T0547)E576 # TweakPsiPhi removed gap before (T0547)H527 # TweakPhi removed gap before (T0547)K71 # TweakPhi removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)E220 # TweakPsiPhi removed gap before (T0547)N65 # TweakPsiPhi removed gap before (T0547)H151 # TweakPhi removed gap before (T0547)R173 # TweakPsiPhi removed gap before (T0547)D3 # TweakPsiPhi removed gap before (T0547)H242 # TweakPhi removed gap before (T0547)D428 # generation 70: best score out of 40: T0547.try1-opt2 210.27638 cost/residue, 902 clashes 0.13481 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 90 47 / 232 = 0.20259 0.00414 ## JiggleSubtree 1 41 27 / 318 = 0.08491 0.00689 ## JiggleSegment 2 40 27 / 322 = 0.08385 0.00644 ## OptSubtree 0 0 0 / 74 = 0.00000 0.00000 ## OptSegment 0 1 1 / 142 = 0.00704 0.00247 ## OptAllSegments 0 0 0 / 65 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 71 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 59 = 0.00000 0.00000 ## TweakPhiSubtree 15 184 112 / 410 = 0.27317 0.00719 ## TweakPhiSegment 27 242 154 / 462 = 0.33333 0.00823 ## TweakPsiSubtree 0 169 124 / 430 = 0.28837 0.00773 ## TweakPsiSegment 1 217 130 / 482 = 0.26971 0.00854 ## TweakPsiPhiSubtree 38 172 105 / 321 = 0.32710 0.00586 ## TweakPsiPhiSegment 29 125 69 / 246 = 0.28049 0.00502 ## TweakHbondSubtree 3 102 65 / 300 = 0.21667 0.00545 ## TweakHbondSegment 2 106 49 / 261 = 0.18774 0.00530 ## TweakMultimer 74 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 57 35 / 110 = 0.31818 0.00097 ## FixOmega 0 0 0 / 60 = 0.00000 0.00000 ## Backrub 55 91 38 / 189 = 0.20106 0.00233 ## BigBackrub 32 29 15 / 126 = 0.11905 0.00228 ## OneRotamer 0 162 68 / 587 = 0.11584 0.00589 ## ClashingRotamer 1 2 0 / 73 = 0.00000 0.00000 ## ClusteredRotamer 13 4 2 / 108 = 0.01852 0.00107 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 151 = 0.00662 0.00017 ## CloseGap 0 19 6 / 224 = 0.02679 0.00729 ## HealGap 0 8 3 / 164 = 0.01829 0.00108 ## MoveGap 0 0 0 / 60 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 138 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 64 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 140 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 61 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 329 = 0.00000 0.00000 ## CrossOver 0 0 0 / 65 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 67 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 79 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)Q433 # TweakPhi removed gap before (T0547)F227 # TweakPsiPhi removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)T482 # TweakPsiSubtree removed gap before (T0547)G42 # TweakPsiPhi removed gap before (T0547)L97 # TweakPsiPhi removed gap before (T0547)R39 # TweakPsiPhi removed gap before (T0547)R474 # TweakPsiPhi removed gap before (T0547)D566 # TweakPsiSubtree removed gap before (T0547)G92 # TweakPsiSubtree removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)N105 # TweakPsiPhi removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)E314 # TweakPhi removed gap before (T0547)D434 # TweakPhi removed gap before (T0547)E26 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)M571 # TweakPsiSubtree removed gap before (T0547)K587 # TweakPsiPhi removed gap before (T0547)S197 # TweakPsiPhi removed gap before (T0547)E561 # TweakPsiSubtree removed gap before (T0547)P335 # TweakPhi removed gap before (T0547)R323 # TweakPsiPhi removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)T228 # TweakPsiPhi removed gap before (T0547)L266 # TweakPsiSubtree removed gap before (T0547)D466 # TweakPsiSubtree removed gap before (T0547)E546 # TweakPsiPhi removed gap before (T0547)Q89 # TweakPsiSubtree removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)L85 # TweakPhi removed gap before (T0547)V397 # generation 71: best score out of 40: T0547.try1-opt2 210.22589 cost/residue, 901 clashes 0.13482 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 91 48 / 233 = 0.20601 0.00437 ## JiggleSubtree 1 41 27 / 322 = 0.08385 0.00680 ## JiggleSegment 2 40 27 / 327 = 0.08257 0.00634 ## OptSubtree 0 0 0 / 75 = 0.00000 0.00000 ## OptSegment 0 1 1 / 147 = 0.00680 0.00238 ## OptAllSegments 0 0 0 / 65 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 71 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 59 = 0.00000 0.00000 ## TweakPhiSubtree 16 187 113 / 415 = 0.27229 0.00712 ## TweakPhiSegment 27 243 155 / 465 = 0.33333 0.00838 ## TweakPsiSubtree 0 173 126 / 438 = 0.28767 0.00775 ## TweakPsiSegment 1 219 130 / 489 = 0.26585 0.00842 ## TweakPsiPhiSubtree 38 173 105 / 329 = 0.31915 0.00572 ## TweakPsiPhiSegment 29 129 70 / 252 = 0.27778 0.00492 ## TweakHbondSubtree 3 103 66 / 306 = 0.21569 0.00548 ## TweakHbondSegment 2 108 49 / 271 = 0.18081 0.00510 ## TweakMultimer 75 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 57 36 / 112 = 0.32143 0.00097 ## FixOmega 0 0 0 / 60 = 0.00000 0.00000 ## Backrub 56 95 40 / 194 = 0.20619 0.00240 ## BigBackrub 32 29 15 / 131 = 0.11450 0.00219 ## OneRotamer 0 166 71 / 599 = 0.11853 0.00600 ## ClashingRotamer 1 2 0 / 73 = 0.00000 0.00000 ## ClusteredRotamer 13 4 2 / 109 = 0.01835 0.00106 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 151 = 0.00662 0.00017 ## CloseGap 0 19 6 / 225 = 0.02667 0.00725 ## HealGap 0 8 3 / 164 = 0.01829 0.00108 ## MoveGap 0 0 0 / 60 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 139 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 64 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 141 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 61 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 331 = 0.00000 0.00000 ## CrossOver 0 0 0 / 65 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 67 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 80 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)E294 # TweakPsiPhi removed gap before (T0547)K68 # TweakPsiPhi removed gap before (T0547)I254 # TweakPsiPhi removed gap before (T0547)S236 # TweakPsiPhi removed gap before (T0547)V331 # TweakPsiSubtree removed gap before (T0547)D562 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)F514 # TweakPhi removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)L574 # TweakPsiPhi removed gap before (T0547)Q56 # TweakPsiSubtree removed gap before (T0547)V300 # TweakPhi removed gap before (T0547)L429 # TweakPhi removed gap before (T0547)S492 # TweakPhi removed gap before (T0547)L399 # TweakPsiPhi removed gap before (T0547)N253 # TweakPsiSubtree removed gap before (T0547)E308 # TweakPhi removed gap before (T0547)E346 # TweakPsiSubtree removed gap before (T0547)I8 # TweakPhi removed gap before (T0547)D103 # TweakPsiPhi removed gap before (T0547)L419 # TweakPhi removed gap before (T0547)D480 # TweakPhi removed gap before (T0547)L420 # TweakPhi removed gap before (T0547)I269 # TweakPhi removed gap before (T0547)Y83 # TweakPsiPhi removed gap before (T0547)G273 # TweakPsiPhi removed gap before (T0547)A431 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V584 # TweakPsiPhi removed gap before (T0547)S490 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPhi removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)E320 # TweakPsiPhi removed gap before (T0547)E457 # TweakPhi removed gap before (T0547)Y75 # TweakPsiPhi removed gap before (T0547)D602 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I609 # TweakPsiSubtree removed gap before (T0547)I302 # TweakPsiSubtree removed gap before (T0547)L429 # TweakPsiPhi removed gap before (T0547)I382 # TweakPhi removed gap before (T0547)N459 # TweakPsiPhi removed gap before (T0547)L48 # generation 72: best score out of 40: T0547.try1-opt2 210.16080 cost/residue, 889 clashes 0.13532 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 91 48 / 234 = 0.20513 0.00436 ## JiggleSubtree 1 41 27 / 328 = 0.08232 0.00668 ## JiggleSegment 2 40 27 / 331 = 0.08157 0.00626 ## OptSubtree 0 0 0 / 75 = 0.00000 0.00000 ## OptSegment 0 1 1 / 149 = 0.00671 0.00235 ## OptAllSegments 0 0 0 / 67 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 71 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 59 = 0.00000 0.00000 ## TweakPhiSubtree 17 188 113 / 418 = 0.27033 0.00707 ## TweakPhiSegment 28 249 158 / 479 = 0.32985 0.00819 ## TweakPsiSubtree 0 174 128 / 442 = 0.28959 0.00769 ## TweakPsiSegment 1 221 131 / 494 = 0.26518 0.00835 ## TweakPsiPhiSubtree 39 178 107 / 341 = 0.31378 0.00563 ## TweakPsiPhiSegment 30 132 73 / 258 = 0.28295 0.00491 ## TweakHbondSubtree 3 105 67 / 312 = 0.21474 0.00548 ## TweakHbondSegment 2 111 50 / 278 = 0.17986 0.00502 ## TweakMultimer 75 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 57 36 / 112 = 0.32143 0.00097 ## FixOmega 0 0 0 / 60 = 0.00000 0.00000 ## Backrub 59 96 41 / 196 = 0.20918 0.00242 ## BigBackrub 32 29 15 / 132 = 0.11364 0.00218 ## OneRotamer 0 167 72 / 611 = 0.11784 0.00598 ## ClashingRotamer 1 3 1 / 74 = 0.01351 0.00177 ## ClusteredRotamer 13 4 2 / 109 = 0.01835 0.00106 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 152 = 0.00658 0.00017 ## CloseGap 0 19 6 / 225 = 0.02667 0.00725 ## HealGap 0 9 4 / 166 = 0.02410 0.00121 ## MoveGap 0 0 0 / 60 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 139 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 64 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 143 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 62 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 336 = 0.00000 0.00000 ## CrossOver 0 0 0 / 65 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 68 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 80 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)Y509 # TweakPsiPhi removed gap before (T0547)G235 # TweakPsiSubtree removed gap before (T0547)E250 # TweakPsiPhi removed gap before (T0547)L351 # TweakPhi removed gap before (T0547)L38 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)H151 # TweakPhi removed gap before (T0547)I540 # TweakPhi removed gap before (T0547)Q309 # TweakPsiSubtree removed gap before (T0547)L54 # TweakPsiPhi removed gap before (T0547)H329 # TweakPsiSubtree removed gap before (T0547)Q56 # TweakPsiPhi removed gap before (T0547)F510 # TweakPsiPhi removed gap before (T0547)D103 # TweakPsiSubtree removed gap before (T0547)P176 # TweakPhi removed gap before (T0547)G74 # TweakPsiSubtree removed gap before (T0547)L418 # TweakPsiSubtree removed gap before (T0547)S485 # TweakPhi removed gap before (T0547)V397 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPhi removed gap before (T0547)D562 # TweakPhi removed gap before (T0547)D434 # TweakPhi removed gap before (T0547)K304 # TweakPsiSubtree removed gap before (T0547)Y509 # TweakPsiPhi removed gap before (T0547)G143 # TweakPsiPhi removed gap before (T0547)L218 # TweakPsiPhi removed gap before (T0547)E470 # TweakPsiSubtree removed gap before (T0547)D501 # TweakPsiSubtree removed gap before (T0547)K607 # TweakPsiSubtree removed gap before (T0547)L557 # TweakPsiPhi removed gap before (T0547)M149 # generation 73: best score out of 40: T0547.try1-opt2 210.13188 cost/residue, 890 clashes 0.13529 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 92 48 / 238 = 0.20168 0.00428 ## JiggleSubtree 2 41 27 / 330 = 0.08182 0.00664 ## JiggleSegment 2 40 27 / 332 = 0.08133 0.00624 ## OptSubtree 0 0 0 / 75 = 0.00000 0.00000 ## OptSegment 0 1 1 / 149 = 0.00671 0.00235 ## OptAllSegments 0 0 0 / 69 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 72 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 59 = 0.00000 0.00000 ## TweakPhiSubtree 17 189 113 / 420 = 0.26905 0.00704 ## TweakPhiSegment 28 256 159 / 489 = 0.32515 0.00815 ## TweakPsiSubtree 0 176 129 / 447 = 0.28859 0.00770 ## TweakPsiSegment 1 223 133 / 500 = 0.26600 0.00831 ## TweakPsiPhiSubtree 40 182 109 / 345 = 0.31594 0.00568 ## TweakPsiPhiSegment 31 135 74 / 264 = 0.28030 0.00481 ## TweakHbondSubtree 4 107 68 / 315 = 0.21587 0.00577 ## TweakHbondSegment 2 112 50 / 282 = 0.17730 0.00495 ## TweakMultimer 78 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 57 36 / 113 = 0.31858 0.00096 ## FixOmega 0 0 0 / 60 = 0.00000 0.00000 ## Backrub 60 99 42 / 201 = 0.20896 0.00246 ## BigBackrub 32 30 15 / 135 = 0.11111 0.00213 ## OneRotamer 0 169 72 / 618 = 0.11650 0.00591 ## ClashingRotamer 1 3 1 / 94 = 0.01064 0.00139 ## ClusteredRotamer 13 4 2 / 110 = 0.01818 0.00105 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 152 = 0.00658 0.00017 ## CloseGap 0 19 6 / 226 = 0.02655 0.00722 ## HealGap 0 9 4 / 174 = 0.02299 0.00116 ## MoveGap 0 0 0 / 60 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 142 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 64 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 143 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 62 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 337 = 0.00000 0.00000 ## CrossOver 0 0 0 / 65 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 68 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 80 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L529 # TweakPsiSubtree removed gap before (T0547)N289 # TweakPsiSubtree removed gap before (T0547)Y279 # TweakPsiSubtree removed gap before (T0547)L332 # TweakPhi removed gap before (T0547)Y363 # TweakPsiSubtree removed gap before (T0547)N528 # TweakPsiSubtree removed gap before (T0547)N508 # TweakPhi removed gap before (T0547)D486 # TweakPhi removed gap before (T0547)I573 # TweakPsiSubtree removed gap before (T0547)L420 # TweakPhi removed gap before (T0547)G107 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPsiPhi removed gap before (T0547)I193 # TweakPhi removed gap before (T0547)M149 # TweakPsiPhi removed gap before (T0547)N443 # TweakPsiPhi removed gap before (T0547)Y83 # TweakPsiPhi removed gap before (T0547)G74 # TweakPsiSubtree removed gap before (T0547)R259 # TweakPhi removed gap before (T0547)K286 # TweakPsiSubtree removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)E115 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)S341 # TweakPsiSubtree removed gap before (T0547)Q520 # TweakPsiSubtree removed gap before (T0547)S321 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPsiPhi removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)I432 # TweakPsiPhi removed gap before (T0547)Y363 # TweakPsiPhi removed gap before (T0547)K99 # TweakPsiPhi removed gap before (T0547)T228 # TweakPsiPhi removed gap before (T0547)F324 # TweakPsiSubtree removed gap before (T0547)L499 # generation 74: best score out of 40: T0547.try1-opt2 210.05707 cost/residue, 898 clashes 0.13466 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 93 49 / 246 = 0.19919 0.00415 ## JiggleSubtree 2 42 28 / 332 = 0.08434 0.00662 ## JiggleSegment 3 40 27 / 334 = 0.08084 0.00621 ## OptSubtree 0 0 0 / 75 = 0.00000 0.00000 ## OptSegment 0 1 1 / 154 = 0.00649 0.00227 ## OptAllSegments 0 0 0 / 70 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 72 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 59 = 0.00000 0.00000 ## TweakPhiSubtree 17 192 114 / 424 = 0.26887 0.00708 ## TweakPhiSegment 28 256 159 / 492 = 0.32317 0.00810 ## TweakPsiSubtree 0 179 131 / 456 = 0.28728 0.00757 ## TweakPsiSegment 1 224 133 / 509 = 0.26130 0.00816 ## TweakPsiPhiSubtree 42 185 111 / 352 = 0.31534 0.00565 ## TweakPsiPhiSegment 32 137 75 / 268 = 0.27985 0.00476 ## TweakHbondSubtree 4 112 72 / 331 = 0.21752 0.00568 ## TweakHbondSegment 2 117 54 / 290 = 0.18621 0.00489 ## TweakMultimer 80 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 57 36 / 113 = 0.31858 0.00096 ## FixOmega 0 0 0 / 60 = 0.00000 0.00000 ## Backrub 60 99 42 / 204 = 0.20588 0.00243 ## BigBackrub 33 31 16 / 136 = 0.11765 0.00217 ## OneRotamer 0 172 74 / 624 = 0.11859 0.00623 ## ClashingRotamer 1 3 1 / 97 = 0.01031 0.00135 ## ClusteredRotamer 13 4 2 / 110 = 0.01818 0.00105 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 153 = 0.00654 0.00017 ## CloseGap 0 19 6 / 226 = 0.02655 0.00722 ## HealGap 0 9 4 / 177 = 0.02260 0.00114 ## MoveGap 0 0 0 / 62 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 143 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 64 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 144 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 62 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 337 = 0.00000 0.00000 ## CrossOver 0 0 0 / 65 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 68 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 81 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)N65 # TweakPsiPhi removed gap before (T0547)M571 # TweakPsiSubtree removed gap before (T0547)T531 # TweakPsiSubtree removed gap before (T0547)P84 # TweakPhi removed gap before (T0547)C483 # TweakPhi removed gap before (T0547)V584 # TweakPsiPhi removed gap before (T0547)K28 # TweakPsiSubtree removed gap before (T0547)P335 # TweakPhi removed gap before (T0547)N443 # TweakPsiSubtree removed gap before (T0547)L186 # TweakPhi removed gap before (T0547)S579 # TweakPsiSubtree removed gap before (T0547)H500 # TweakPsiPhi removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)G190 # TweakPhi removed gap before (T0547)R39 # TweakPsiSubtree removed gap before (T0547)T559 # TweakPhi removed gap before (T0547)E552 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPsiPhi removed gap before (T0547)F392 # TweakPsiPhi removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPhi removed gap before (T0547)Y279 # TweakPsiPhi removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)V547 # TweakPsiSubtree removed gap before (T0547)N201 # TweakPsiSubtree removed gap before (T0547)L529 # TweakPsiSubtree removed gap before (T0547)G199 # TweakPsiPhi removed gap before (T0547)T534 # TweakPsiSubtree removed gap before (T0547)S403 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L365 # TweakPsiPhi removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)K493 # TweakPsiPhi removed gap before (T0547)K582 # TweakPhi removed gap before (T0547)Q424 # TweakPsiPhi removed gap before (T0547)I537 # TweakPsiSubtree removed gap before (T0547)W454 # TweakPhi removed gap before (T0547)K587 # TweakPsiSubtree removed gap before (T0547)I537 # generation 75: best score out of 40: T0547.try1-opt2 210.03430 cost/residue, 898 clashes 0.13469 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 93 49 / 249 = 0.19679 0.00410 ## JiggleSubtree 2 42 28 / 337 = 0.08309 0.00652 ## JiggleSegment 3 40 27 / 338 = 0.07988 0.00613 ## OptSubtree 0 0 0 / 76 = 0.00000 0.00000 ## OptSegment 0 1 1 / 154 = 0.00649 0.00227 ## OptAllSegments 0 0 0 / 70 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 72 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 59 = 0.00000 0.00000 ## TweakPhiSubtree 17 195 115 / 430 = 0.26744 0.00702 ## TweakPhiSegment 29 259 163 / 496 = 0.32863 0.00809 ## TweakPsiSubtree 0 183 134 / 465 = 0.28817 0.00758 ## TweakPsiSegment 1 228 135 / 519 = 0.26012 0.00801 ## TweakPsiPhiSubtree 42 187 113 / 358 = 0.31564 0.00563 ## TweakPsiPhiSegment 33 140 77 / 273 = 0.28205 0.00473 ## TweakHbondSubtree 4 115 74 / 337 = 0.21958 0.00576 ## TweakHbondSegment 2 118 57 / 294 = 0.19388 0.00494 ## TweakMultimer 82 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 57 36 / 114 = 0.31579 0.00095 ## FixOmega 0 0 0 / 60 = 0.00000 0.00000 ## Backrub 61 103 46 / 214 = 0.21495 0.00248 ## BigBackrub 33 33 17 / 141 = 0.12057 0.00229 ## OneRotamer 0 173 75 / 633 = 0.11848 0.00620 ## ClashingRotamer 1 3 1 / 99 = 0.01010 0.00132 ## ClusteredRotamer 13 4 2 / 111 = 0.01802 0.00104 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 153 = 0.00654 0.00017 ## CloseGap 0 19 6 / 226 = 0.02655 0.00722 ## HealGap 0 9 4 / 181 = 0.02210 0.00111 ## MoveGap 0 0 0 / 62 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 144 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 64 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 145 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 62 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 337 = 0.00000 0.00000 ## CrossOver 0 0 0 / 65 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 69 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 83 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)F93 # TweakPsiSubtree removed gap before (T0547)D602 # TweakPsiPhi removed gap before (T0547)D401 # TweakPhi removed gap before (T0547)G78 # TweakPsiPhi removed gap before (T0547)H233 # TweakPsiPhi removed gap before (T0547)E115 # TweakPsiSubtree removed gap before (T0547)G198 # TweakPhi removed gap before (T0547)E285 # TweakPsiSubtree removed gap before (T0547)P84 # TweakPsiSubtree removed gap before (T0547)N601 # TweakPsiSubtree removed gap before (T0547)A296 # TweakPhi removed gap before (T0547)T531 # TweakPsiPhi removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)G101 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)N289 # TweakPsiSubtree removed gap before (T0547)A345 # TweakPsiSubtree removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)K260 # TweakPhi removed gap before (T0547)I157 # TweakPsiSubtree removed gap before (T0547)D572 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)S381 # TweakPsiPhi removed gap before (T0547)F232 # TweakPsiSubtree removed gap before (T0547)G421 # TweakPsiSubtree removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)E338 # TweakPsiSubtree removed gap before (T0547)H500 # TweakPhi removed gap before (T0547)H329 # TweakPhi removed gap before (T0547)E115 # TweakPhi removed gap before (T0547)S539 # TweakPsiSubtree removed gap before (T0547)D586 # TweakPsiPhi removed gap before (T0547)K245 # generation 76: best score out of 40: T0547.try1-opt2 210.01373 cost/residue, 899 clashes 0.13466 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 93 49 / 252 = 0.19444 0.00405 ## JiggleSubtree 2 42 28 / 341 = 0.08211 0.00644 ## JiggleSegment 3 41 28 / 341 = 0.08211 0.00608 ## OptSubtree 0 0 0 / 76 = 0.00000 0.00000 ## OptSegment 0 1 1 / 155 = 0.00645 0.00226 ## OptAllSegments 0 0 0 / 71 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 72 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 59 = 0.00000 0.00000 ## TweakPhiSubtree 17 197 116 / 434 = 0.26728 0.00708 ## TweakPhiSegment 29 261 164 / 501 = 0.32735 0.00805 ## TweakPsiSubtree 0 186 137 / 474 = 0.28903 0.00754 ## TweakPsiSegment 1 233 138 / 527 = 0.26186 0.00795 ## TweakPsiPhiSubtree 42 191 116 / 365 = 0.31781 0.00561 ## TweakPsiPhiSegment 33 141 78 / 275 = 0.28364 0.00480 ## TweakHbondSubtree 4 118 76 / 344 = 0.22093 0.00581 ## TweakHbondSegment 2 121 59 / 301 = 0.19601 0.00485 ## TweakMultimer 82 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 58 36 / 115 = 0.31304 0.00095 ## FixOmega 0 0 0 / 62 = 0.00000 0.00000 ## Backrub 62 106 47 / 217 = 0.21659 0.00248 ## BigBackrub 34 33 17 / 143 = 0.11888 0.00226 ## OneRotamer 0 173 75 / 637 = 0.11774 0.00616 ## ClashingRotamer 1 3 1 / 105 = 0.00952 0.00124 ## ClusteredRotamer 13 4 2 / 114 = 0.01754 0.00101 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 156 = 0.00641 0.00017 ## CloseGap 0 19 6 / 226 = 0.02655 0.00722 ## HealGap 0 9 4 / 185 = 0.02162 0.00109 ## MoveGap 0 0 0 / 63 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 146 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 65 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 145 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 63 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 341 = 0.00000 0.00000 ## CrossOver 0 0 0 / 66 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 69 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 84 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPhi removed gap before (T0547)L446 # TweakPhi removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)I254 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPhi removed gap before (T0547)F444 # TweakPsiPhi removed gap before (T0547)L418 # TweakPsiPhi removed gap before (T0547)K526 # TweakPsiPhi removed gap before (T0547)E285 # TweakPhi removed gap before (T0547)D558 # TweakPsiPhi removed gap before (T0547)N404 # TweakPsiSubtree removed gap before (T0547)L385 # TweakPhi removed gap before (T0547)Q554 # TweakPhi removed gap before (T0547)F14 # TweakPhi removed gap before (T0547)W454 # TweakPhi removed gap before (T0547)V336 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N80 # TweakPsiPhi removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)G235 # TweakPsiPhi removed gap before (T0547)A263 # TweakPhi removed gap before (T0547)G512 # TweakPhi removed gap before (T0547)N253 # TweakPsiPhi removed gap before (T0547)K607 # TweakPsiPhi removed gap before (T0547)K260 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)L389 # TweakPsiSubtree removed gap before (T0547)G252 # TweakPsiSubtree removed gap before (T0547)S492 # TweakPhi removed gap before (T0547)G274 # TweakPhi removed gap before (T0547)S202 # TweakPhi removed gap before (T0547)Q89 # TweakPhi removed gap before (T0547)I34 # TweakPsiPhi removed gap before (T0547)I167 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPsiSubtree removed gap before (T0547)V98 # TweakPsiPhi removed gap before (T0547)K222 # TweakPsiPhi removed gap before (T0547)I238 # TweakPhi removed gap before (T0547)L258 # generation 77: best score out of 40: T0547.try1-opt2 209.96638 cost/residue, 885 clashes 0.13540 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 93 49 / 255 = 0.19216 0.00400 ## JiggleSubtree 2 42 28 / 342 = 0.08187 0.00642 ## JiggleSegment 3 41 28 / 344 = 0.08140 0.00603 ## OptSubtree 0 0 0 / 76 = 0.00000 0.00000 ## OptSegment 0 1 1 / 159 = 0.00629 0.00220 ## OptAllSegments 0 0 0 / 72 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 73 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 60 = 0.00000 0.00000 ## TweakPhiSubtree 17 202 120 / 443 = 0.27088 0.00717 ## TweakPhiSegment 29 266 167 / 511 = 0.32681 0.00801 ## TweakPsiSubtree 0 186 137 / 479 = 0.28601 0.00746 ## TweakPsiSegment 1 234 139 / 531 = 0.26177 0.00791 ## TweakPsiPhiSubtree 42 194 119 / 371 = 0.32075 0.00568 ## TweakPsiPhiSegment 33 142 78 / 282 = 0.27660 0.00468 ## TweakHbondSubtree 4 121 78 / 354 = 0.22034 0.00572 ## TweakHbondSegment 2 123 60 / 307 = 0.19544 0.00492 ## TweakMultimer 83 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 58 36 / 115 = 0.31304 0.00095 ## FixOmega 0 0 0 / 63 = 0.00000 0.00000 ## Backrub 63 107 47 / 220 = 0.21364 0.00244 ## BigBackrub 35 36 19 / 146 = 0.13014 0.00234 ## OneRotamer 0 173 75 / 646 = 0.11610 0.00607 ## ClashingRotamer 1 3 1 / 108 = 0.00926 0.00121 ## ClusteredRotamer 13 4 2 / 114 = 0.01754 0.00101 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 156 = 0.00641 0.00017 ## CloseGap 0 19 6 / 226 = 0.02655 0.00722 ## HealGap 0 9 4 / 187 = 0.02139 0.00108 ## MoveGap 0 0 0 / 63 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 147 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 66 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 147 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 63 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 343 = 0.00000 0.00000 ## CrossOver 0 0 0 / 66 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 70 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 85 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L223 # TweakPhi removed gap before (T0547)T531 # TweakPhi removed gap before (T0547)E576 # TweakPhi removed gap before (T0547)I166 # TweakPhi removed gap before (T0547)K245 # TweakPsiSubtree removed gap before (T0547)F599 # TweakPsiPhi removed gap before (T0547)N65 # TweakPhi removed gap before (T0547)C22 # TweakPhi removed gap before (T0547)S579 # TweakPhi removed gap before (T0547)K20 # TweakPhi removed gap before (T0547)Q400 # TweakPhi removed gap before (T0547)K76 # TweakPsiPhi removed gap before (T0547)A569 # TweakPhi removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)E546 # TweakPhi removed gap before (T0547)V442 # TweakPsiSubtree removed gap before (T0547)W194 # TweakPhi removed gap before (T0547)N328 # TweakPhi removed gap before (T0547)K71 # TweakPhi removed gap before (T0547)N443 # TweakPhi removed gap before (T0547)E285 # TweakPsiPhi removed gap before (T0547)L583 # TweakPhi removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)K68 # TweakPsiPhi removed gap before (T0547)L394 # TweakPsiSubtree removed gap before (T0547)N289 # TweakPsiPhi removed gap before (T0547)N67 # TweakPhi removed gap before (T0547)T409 # TweakPhi removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)N141 # TweakPhi removed gap before (T0547)D312 # TweakPsiSubtree removed gap before (T0547)G181 # TweakPhi removed gap before (T0547)A121 # TweakPsiPhi removed gap before (T0547)F227 # generation 78: best score out of 40: T0547.try1-opt2 209.94446 cost/residue, 902 clashes 0.13463 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 93 49 / 256 = 0.19141 0.00399 ## JiggleSubtree 2 42 28 / 347 = 0.08069 0.00633 ## JiggleSegment 3 41 28 / 346 = 0.08092 0.00599 ## OptSubtree 0 0 0 / 77 = 0.00000 0.00000 ## OptSegment 0 1 1 / 162 = 0.00617 0.00216 ## OptAllSegments 0 0 0 / 72 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 74 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 61 = 0.00000 0.00000 ## TweakPhiSubtree 17 203 120 / 448 = 0.26786 0.00709 ## TweakPhiSegment 29 274 173 / 528 = 0.32765 0.00788 ## TweakPsiSubtree 0 188 139 / 485 = 0.28660 0.00744 ## TweakPsiSegment 1 234 139 / 532 = 0.26128 0.00790 ## TweakPsiPhiSubtree 44 195 120 / 375 = 0.32000 0.00564 ## TweakPsiPhiSegment 33 143 78 / 286 = 0.27273 0.00461 ## TweakHbondSubtree 5 124 79 / 361 = 0.21884 0.00562 ## TweakHbondSegment 2 124 61 / 313 = 0.19489 0.00485 ## TweakMultimer 84 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 59 37 / 117 = 0.31624 0.00098 ## FixOmega 0 0 0 / 63 = 0.00000 0.00000 ## Backrub 63 108 47 / 222 = 0.21171 0.00242 ## BigBackrub 35 38 20 / 149 = 0.13423 0.00234 ## OneRotamer 0 176 76 / 658 = 0.11550 0.00597 ## ClashingRotamer 1 3 1 / 110 = 0.00909 0.00119 ## ClusteredRotamer 13 4 2 / 114 = 0.01754 0.00101 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 159 = 0.00629 0.00017 ## CloseGap 0 19 6 / 227 = 0.02643 0.00719 ## HealGap 0 9 4 / 188 = 0.02128 0.00107 ## MoveGap 0 0 0 / 63 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 150 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 67 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 147 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 64 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 345 = 0.00000 0.00000 ## CrossOver 0 0 0 / 67 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 71 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 86 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)I537 # TweakPhi removed gap before (T0547)V98 # TweakPsiPhi removed gap before (T0547)M450 # TweakPhi removed gap before (T0547)D562 # TweakPsiSubtree removed gap before (T0547)L418 # TweakPhi removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)S287 # TweakPsiPhi removed gap before (T0547)I180 # TweakPhi removed gap before (T0547)A30 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)S608 # TweakPhi removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)K506 # TweakPsiPhi removed gap before (T0547)L375 # TweakPsiPhi removed gap before (T0547)K493 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)A251 # TweakPsiPhi removed gap before (T0547)Y440 # TweakPsiPhi removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)I350 # TweakPhi removed gap before (T0547)G74 # TweakPhi removed gap before (T0547)L511 # TweakPsiSubtree removed gap before (T0547)H53 # TweakPsiPhi removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)A170 # TweakPsiPhi removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)N201 # TweakPsiPhi removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)G77 # TweakPsiSubtree removed gap before (T0547)L100 # TweakPsiPhi removed gap before (T0547)F530 # TweakPhi removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)N284 # TweakPsiSubtree removed gap before (T0547)K171 # TweakPsiPhi removed gap before (T0547)R259 # TweakPhi removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)A427 # TweakPsiPhi removed gap before (T0547)N80 # TweakPsiSubtree removed gap before (T0547)T239 # TweakPsiSubtree removed gap before (T0547)V336 # TweakPsiSubtree removed gap before (T0547)Q520 # TweakPhi removed gap before (T0547)L394 # TweakPhi removed gap before (T0547)S188 # generation 79: best score out of 40: T0547.try1-opt2 209.84389 cost/residue, 878 clashes 0.13535 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 95 51 / 259 = 0.19691 0.00446 ## JiggleSubtree 2 42 28 / 349 = 0.08023 0.00629 ## JiggleSegment 3 41 28 / 350 = 0.08000 0.00592 ## OptSubtree 0 0 0 / 78 = 0.00000 0.00000 ## OptSegment 0 1 1 / 166 = 0.00602 0.00211 ## OptAllSegments 0 0 0 / 73 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 74 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 61 = 0.00000 0.00000 ## TweakPhiSubtree 17 203 121 / 454 = 0.26652 0.00700 ## TweakPhiSegment 29 279 175 / 538 = 0.32528 0.00785 ## TweakPsiSubtree 0 189 140 / 493 = 0.28398 0.00732 ## TweakPsiSegment 1 237 141 / 539 = 0.26160 0.00783 ## TweakPsiPhiSubtree 44 198 122 / 382 = 0.31937 0.00564 ## TweakPsiPhiSegment 33 146 80 / 293 = 0.27304 0.00456 ## TweakHbondSubtree 5 128 82 / 371 = 0.22102 0.00561 ## TweakHbondSegment 2 130 67 / 320 = 0.20938 0.00535 ## TweakMultimer 85 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 60 38 / 118 = 0.32203 0.00098 ## FixOmega 0 0 0 / 64 = 0.00000 0.00000 ## Backrub 63 108 47 / 224 = 0.20982 0.00240 ## BigBackrub 37 38 20 / 150 = 0.13333 0.00232 ## OneRotamer 0 176 76 / 665 = 0.11429 0.00591 ## ClashingRotamer 1 3 1 / 111 = 0.00901 0.00118 ## ClusteredRotamer 13 4 2 / 114 = 0.01754 0.00101 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 159 = 0.00629 0.00017 ## CloseGap 0 19 6 / 228 = 0.02632 0.00716 ## HealGap 0 9 4 / 189 = 0.02116 0.00107 ## MoveGap 0 0 0 / 63 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 152 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 67 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 148 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 66 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 347 = 0.00000 0.00000 ## CrossOver 0 0 0 / 67 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 71 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 87 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)V35 # TweakPsiPhi removed gap before (T0547)S208 # TweakPsiSubtree removed gap before (T0547)S368 # TweakPsiPhi removed gap before (T0547)A263 # TweakPhi removed gap before (T0547)N443 # TweakPsiPhi removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)S539 # TweakPhi removed gap before (T0547)A374 # TweakPhi removed gap before (T0547)Q433 # TweakPsiSubtree removed gap before (T0547)A374 # TweakPsiSubtree removed gap before (T0547)K76 # TweakPsiPhi removed gap before (T0547)V87 # TweakPsiPhi removed gap before (T0547)V131 # TweakPhi removed gap before (T0547)D312 # TweakPsiPhi removed gap before (T0547)L97 # TweakPhi removed gap before (T0547)N459 # TweakPhi removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)G101 # TweakPhi removed gap before (T0547)I350 # TweakPsiSubtree removed gap before (T0547)F318 # TweakPsiSubtree removed gap before (T0547)N284 # TweakPhi removed gap before (T0547)V87 # TweakPsiPhi removed gap before (T0547)R50 # TweakPhi removed gap before (T0547)K86 # TweakPsiPhi removed gap before (T0547)F73 # TweakPhi removed gap before (T0547)K353 # TweakPsiPhi removed gap before (T0547)K28 # TweakPsiSubtree removed gap before (T0547)N152 # TweakPsiPhi removed gap before (T0547)K246 # TweakPsiPhi removed gap before (T0547)K353 # TweakPsiPhi removed gap before (T0547)E507 # TweakPhi removed gap before (T0547)F392 # TweakPhi removed gap before (T0547)G192 # TweakPhi removed gap before (T0547)Y509 # TweakPsiSubtree removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)A405 # generation 80: best score out of 40: T0547.try1-opt2 209.83066 cost/residue, 900 clashes 0.13388 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 97 52 / 264 = 0.19697 0.00447 ## JiggleSubtree 2 42 28 / 352 = 0.07955 0.00624 ## JiggleSegment 3 41 28 / 350 = 0.08000 0.00592 ## OptSubtree 0 0 0 / 78 = 0.00000 0.00000 ## OptSegment 0 1 1 / 171 = 0.00585 0.00205 ## OptAllSegments 0 0 0 / 74 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 75 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 62 = 0.00000 0.00000 ## TweakPhiSubtree 17 205 123 / 465 = 0.26452 0.00694 ## TweakPhiSegment 29 281 177 / 543 = 0.32597 0.00780 ## TweakPsiSubtree 0 191 142 / 498 = 0.28514 0.00750 ## TweakPsiSegment 1 239 142 / 542 = 0.26199 0.00786 ## TweakPsiPhiSubtree 44 201 124 / 390 = 0.31795 0.00554 ## TweakPsiPhiSegment 33 149 81 / 298 = 0.27181 0.00472 ## TweakHbondSubtree 5 129 83 / 375 = 0.22133 0.00558 ## TweakHbondSegment 2 136 70 / 333 = 0.21021 0.00534 ## TweakMultimer 87 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 60 38 / 119 = 0.31933 0.00098 ## FixOmega 0 0 0 / 64 = 0.00000 0.00000 ## Backrub 63 110 48 / 227 = 0.21145 0.00239 ## BigBackrub 37 39 21 / 155 = 0.13548 0.00230 ## OneRotamer 0 176 76 / 668 = 0.11377 0.00588 ## ClashingRotamer 1 3 1 / 115 = 0.00870 0.00114 ## ClusteredRotamer 13 4 2 / 116 = 0.01724 0.00099 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 160 = 0.00625 0.00016 ## CloseGap 0 19 6 / 229 = 0.02620 0.00713 ## HealGap 0 9 4 / 191 = 0.02094 0.00106 ## MoveGap 0 0 0 / 63 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 152 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 70 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 149 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 67 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 349 = 0.00000 0.00000 ## CrossOver 0 0 0 / 68 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 71 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 87 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)H329 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)K607 # TweakPhi removed gap before (T0547)L529 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G262 # TweakPsiPhi removed gap before (T0547)K171 # TweakPsiPhi removed gap before (T0547)I269 # TweakPsiSubtree removed gap before (T0547)A121 # TweakPsiPhi removed gap before (T0547)A553 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)S287 # TweakPhi removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)F51 # TweakPsiPhi removed gap before (T0547)H532 # TweakPsiSubtree removed gap before (T0547)K543 # TweakPsiPhi removed gap before (T0547)E294 # TweakPsiPhi removed gap before (T0547)G107 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)K222 # TweakPhi removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)R402 # TweakPsiSubtree removed gap before (T0547)D484 # TweakPsiPhi removed gap before (T0547)G544 # TweakPsiPhi removed gap before (T0547)K370 # TweakPhi removed gap before (T0547)L391 # TweakPhi removed gap before (T0547)A476 # TweakPsiSubtree removed gap before (T0547)A189 # TweakPsiSubtree removed gap before (T0547)A307 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)R50 # TweakPhi removed gap before (T0547)L234 # TweakPsiPhi removed gap before (T0547)D602 # TweakPsiPhi removed gap before (T0547)D33 # TweakPsiSubtree removed gap before (T0547)Q424 # TweakPsiSubtree removed gap before (T0547)A114 # TweakPhi removed gap before (T0547)E278 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A327 # TweakPhi removed gap before (T0547)F318 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPsiSubtree removed gap before (T0547)N123 # TweakPsiSubtree removed gap before (T0547)E488 # TweakPsiPhi removed gap before (T0547)K607 # TweakPsiSubtree removed gap before (T0547)Y290 # TweakPhi removed gap before (T0547)A307 # TweakPsiPhi removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)I432 # generation 81: best score out of 40: T0547.try1-opt2 209.71687 cost/residue, 874 clashes 0.13497 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 99 53 / 273 = 0.19414 0.00457 ## JiggleSubtree 2 42 28 / 352 = 0.07955 0.00624 ## JiggleSegment 3 42 29 / 355 = 0.08169 0.00585 ## OptSubtree 0 0 0 / 78 = 0.00000 0.00000 ## OptSegment 0 1 1 / 174 = 0.00575 0.00201 ## OptAllSegments 0 0 0 / 75 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 75 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 62 = 0.00000 0.00000 ## TweakPhiSubtree 17 207 125 / 469 = 0.26652 0.00690 ## TweakPhiSegment 29 285 181 / 551 = 0.32849 0.00800 ## TweakPsiSubtree 0 196 145 / 509 = 0.28487 0.00740 ## TweakPsiSegment 1 243 145 / 548 = 0.26460 0.00835 ## TweakPsiPhiSubtree 45 202 124 / 396 = 0.31313 0.00545 ## TweakPsiPhiSegment 34 154 81 / 308 = 0.26299 0.00456 ## TweakHbondSubtree 7 129 84 / 377 = 0.22281 0.00556 ## TweakHbondSegment 2 140 74 / 345 = 0.21449 0.00525 ## TweakMultimer 90 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 60 38 / 119 = 0.31933 0.00098 ## FixOmega 0 0 0 / 65 = 0.00000 0.00000 ## Backrub 65 112 49 / 229 = 0.21397 0.00253 ## BigBackrub 43 40 22 / 160 = 0.13750 0.00239 ## OneRotamer 0 176 76 / 674 = 0.11276 0.00583 ## ClashingRotamer 1 3 1 / 117 = 0.00855 0.00112 ## ClusteredRotamer 13 4 2 / 118 = 0.01695 0.00098 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 160 = 0.00625 0.00016 ## CloseGap 0 19 6 / 229 = 0.02620 0.00713 ## HealGap 0 9 4 / 192 = 0.02083 0.00105 ## MoveGap 0 0 0 / 64 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 153 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 70 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 149 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 67 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 351 = 0.00000 0.00000 ## CrossOver 0 0 0 / 68 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 71 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 87 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)A276 # TweakPsiSubtree removed gap before (T0547)K423 # TweakPsiPhi removed gap before (T0547)V21 # TweakPsiPhi removed gap before (T0547)F14 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPhi removed gap before (T0547)F447 # TweakPsiPhi removed gap before (T0547)E278 # TweakPsiSubtree removed gap before (T0547)A165 # TweakPhi removed gap before (T0547)S490 # TweakPsiSubtree removed gap before (T0547)L391 # TweakPhi removed gap before (T0547)Y75 # TweakPsiPhi removed gap before (T0547)Y366 # TweakPsiSubtree removed gap before (T0547)I157 # TweakPhi removed gap before (T0547)E213 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPsiSubtree removed gap before (T0547)S287 # TweakPsiPhi removed gap before (T0547)G133 # TweakPhi removed gap before (T0547)K86 # TweakPsiSubtree removed gap before (T0547)I550 # TweakPsiSubtree removed gap before (T0547)G64 # TweakPsiSubtree removed gap before (T0547)L54 # TweakPsiSubtree removed gap before (T0547)A147 # TweakPhi removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)D602 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPsiSubtree removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)N528 # TweakPsiSubtree removed gap before (T0547)N18 # TweakPsiSubtree removed gap before (T0547)N580 # TweakPsiPhi removed gap before (T0547)F227 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPhi removed gap before (T0547)L515 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPsiPhi removed gap before (T0547)I23 # TweakPsiSubtree removed gap before (T0547)R50 # TweakPhi removed gap before (T0547)I145 # TweakPsiSubtree removed gap before (T0547)L349 # generation 82: best score out of 40: T0547.try1-opt2 209.71687 cost/residue, 874 clashes 0.13497 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 101 54 / 282 = 0.19149 0.00443 ## JiggleSubtree 2 42 28 / 353 = 0.07932 0.00622 ## JiggleSegment 3 42 29 / 357 = 0.08123 0.00581 ## OptSubtree 0 0 0 / 78 = 0.00000 0.00000 ## OptSegment 0 1 1 / 177 = 0.00565 0.00198 ## OptAllSegments 0 0 0 / 75 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 75 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 64 = 0.00000 0.00000 ## TweakPhiSubtree 17 208 126 / 472 = 0.26695 0.00687 ## TweakPhiSegment 29 288 182 / 557 = 0.32675 0.00792 ## TweakPsiSubtree 0 198 147 / 516 = 0.28488 0.00745 ## TweakPsiSegment 1 246 147 / 563 = 0.26110 0.00814 ## TweakPsiPhiSubtree 45 204 124 / 402 = 0.30846 0.00537 ## TweakPsiPhiSegment 36 155 81 / 311 = 0.26045 0.00452 ## TweakHbondSubtree 7 131 84 / 383 = 0.21932 0.00547 ## TweakHbondSegment 2 143 74 / 353 = 0.20963 0.00513 ## TweakMultimer 91 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 60 38 / 119 = 0.31933 0.00098 ## FixOmega 0 0 0 / 65 = 0.00000 0.00000 ## Backrub 65 113 49 / 233 = 0.21030 0.00249 ## BigBackrub 43 41 23 / 162 = 0.14198 0.00256 ## OneRotamer 0 179 77 / 682 = 0.11290 0.00576 ## ClashingRotamer 1 3 1 / 120 = 0.00833 0.00109 ## ClusteredRotamer 13 4 2 / 118 = 0.01695 0.00098 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 162 = 0.00617 0.00016 ## CloseGap 0 19 6 / 229 = 0.02620 0.00713 ## HealGap 0 9 4 / 192 = 0.02083 0.00105 ## MoveGap 0 0 0 / 65 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 153 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 72 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 150 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 68 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 353 = 0.00000 0.00000 ## CrossOver 0 0 0 / 69 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 72 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)N11 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V611 # TweakPhi removed gap before (T0547)K102 # TweakPhi removed gap before (T0547)I412 # TweakPsiSubtree removed gap before (T0547)V300 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N152 # TweakPsiSubtree removed gap before (T0547)Y440 # TweakPhi removed gap before (T0547)I540 # TweakPhi removed gap before (T0547)Y25 # TweakPsiPhi removed gap before (T0547)N201 # TweakPsiPhi removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)P315 # TweakPsiSubtree removed gap before (T0547)V184 # TweakPsiSubtree removed gap before (T0547)R39 # TweakPsiSubtree removed gap before (T0547)K102 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)A431 # TweakPsiSubtree removed gap before (T0547)G544 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPsiPhi removed gap before (T0547)F51 # TweakPhi removed gap before (T0547)L108 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G181 # TweakPsiSubtree removed gap before (T0547)Q309 # TweakPsiPhi removed gap before (T0547)A247 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G205 # TweakPhi removed gap before (T0547)N603 # TweakPsiSubtree removed gap before (T0547)P356 # TweakPsiPhi removed gap before (T0547)S188 # TweakPhi removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)A146 # TweakPsiPhi removed gap before (T0547)H53 # TweakPsiSubtree removed gap before (T0547)E488 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A251 # TweakPhi removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)V584 # TweakPsiPhi removed gap before (T0547)I129 # TweakPsiPhi removed gap before (T0547)W194 # TweakPsiPhi removed gap before (T0547)L583 # TweakPhi removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)A247 # TweakPsiPhi removed gap before (T0547)D564 # TweakPhi removed gap before (T0547)A276 # generation 83: best score out of 40: T0547.try1-opt2 209.42523 cost/residue, 868 clashes 0.13511 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 103 56 / 288 = 0.19444 0.00437 ## JiggleSubtree 2 42 28 / 353 = 0.07932 0.00622 ## JiggleSegment 3 42 29 / 359 = 0.08078 0.00578 ## OptSubtree 0 0 0 / 78 = 0.00000 0.00000 ## OptSegment 0 1 1 / 181 = 0.00552 0.00193 ## OptAllSegments 0 0 0 / 76 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 76 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 64 = 0.00000 0.00000 ## TweakPhiSubtree 17 209 127 / 476 = 0.26681 0.00682 ## TweakPhiSegment 29 293 183 / 568 = 0.32218 0.00779 ## TweakPsiSubtree 0 199 148 / 527 = 0.28083 0.00731 ## TweakPsiSegment 1 250 150 / 571 = 0.26270 0.00855 ## TweakPsiPhiSubtree 45 205 125 / 408 = 0.30637 0.00532 ## TweakPsiPhiSegment 36 157 82 / 316 = 0.25949 0.00450 ## TweakHbondSubtree 7 134 86 / 392 = 0.21939 0.00549 ## TweakHbondSegment 3 145 74 / 363 = 0.20386 0.00499 ## TweakMultimer 93 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 61 38 / 121 = 0.31405 0.00096 ## FixOmega 0 0 0 / 65 = 0.00000 0.00000 ## Backrub 69 116 50 / 238 = 0.21008 0.00244 ## BigBackrub 45 41 23 / 163 = 0.14110 0.00254 ## OneRotamer 0 180 77 / 684 = 0.11257 0.00574 ## ClashingRotamer 1 3 1 / 123 = 0.00813 0.00106 ## ClusteredRotamer 13 4 2 / 119 = 0.01681 0.00097 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 163 = 0.00613 0.00016 ## CloseGap 0 19 6 / 230 = 0.02609 0.00710 ## HealGap 0 9 4 / 192 = 0.02083 0.00105 ## MoveGap 0 0 0 / 65 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 153 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 72 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 150 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 68 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 357 = 0.00000 0.00000 ## CrossOver 0 0 0 / 69 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 74 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPsiPhi removed gap before (T0547)S372 # TweakPhi removed gap before (T0547)R173 # TweakPsiSubtree removed gap before (T0547)D360 # TweakPsiPhi removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)N249 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E158 # TweakPsiPhi removed gap before (T0547)H527 # TweakPsiSubtree removed gap before (T0547)E535 # TweakPsiPhi removed gap before (T0547)K203 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)E158 # TweakPsiSubtree removed gap before (T0547)E294 # TweakPsiPhi removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)G190 # TweakPsiSubtree removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)G159 # TweakPsiSubtree removed gap before (T0547)V436 # TweakPsiPhi removed gap before (T0547)E294 # TweakPsiSubtree removed gap before (T0547)L339 # TweakPsiSubtree removed gap before (T0547)L523 # TweakPsiSubtree removed gap before (T0547)A327 # TweakPsiPhi removed gap before (T0547)D393 # TweakPhi removed gap before (T0547)A536 # TweakPsiSubtree removed gap before (T0547)L515 # TweakPsiPhi removed gap before (T0547)K310 # TweakPsiSubtree removed gap before (T0547)M2 # TweakPsiSubtree removed gap before (T0547)S280 # TweakPsiSubtree removed gap before (T0547)D562 # TweakPsiSubtree removed gap before (T0547)V215 # TweakPsiSubtree removed gap before (T0547)D41 # TweakPsiPhi removed gap before (T0547)I369 # TweakPsiPhi removed gap before (T0547)I382 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPsiPhi removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)A330 # TweakPsiSubtree removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)S381 # generation 84: best score out of 40: T0547.try1-opt2 209.24193 cost/residue, 864 clashes 0.13511 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 105 57 / 290 = 0.19655 0.00434 ## JiggleSubtree 2 42 28 / 354 = 0.07910 0.00620 ## JiggleSegment 3 43 30 / 364 = 0.08242 0.00577 ## OptSubtree 0 0 0 / 78 = 0.00000 0.00000 ## OptSegment 0 1 1 / 182 = 0.00549 0.00192 ## OptAllSegments 0 0 0 / 76 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 65 = 0.00000 0.00000 ## TweakPhiSubtree 17 211 127 / 479 = 0.26514 0.00677 ## TweakPhiSegment 30 295 184 / 570 = 0.32281 0.00795 ## TweakPsiSubtree 0 201 152 / 535 = 0.28411 0.00735 ## TweakPsiSegment 1 255 155 / 587 = 0.26405 0.00838 ## TweakPsiPhiSubtree 45 206 125 / 413 = 0.30266 0.00525 ## TweakPsiPhiSegment 36 161 85 / 323 = 0.26316 0.00450 ## TweakHbondSubtree 7 135 88 / 398 = 0.22111 0.00550 ## TweakHbondSegment 3 146 75 / 370 = 0.20270 0.00491 ## TweakMultimer 94 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 61 38 / 122 = 0.31148 0.00095 ## FixOmega 0 0 0 / 66 = 0.00000 0.00000 ## Backrub 70 119 52 / 243 = 0.21399 0.00242 ## BigBackrub 45 41 23 / 166 = 0.13855 0.00250 ## OneRotamer 0 184 79 / 695 = 0.11367 0.00596 ## ClashingRotamer 1 3 1 / 126 = 0.00794 0.00104 ## ClusteredRotamer 13 4 2 / 121 = 0.01653 0.00095 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 165 = 0.00606 0.00016 ## CloseGap 0 19 6 / 230 = 0.02609 0.00710 ## HealGap 0 9 4 / 194 = 0.02062 0.00104 ## MoveGap 0 0 0 / 66 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 154 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 72 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 152 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 68 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 358 = 0.00000 0.00000 ## CrossOver 0 0 0 / 69 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 74 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)T531 # TweakPhi removed gap before (T0547)D501 # TweakPsiSubtree removed gap before (T0547)D364 # TweakPsiSubtree removed gap before (T0547)K352 # TweakPhi removed gap before (T0547)A330 # TweakPhi removed gap before (T0547)L349 # TweakPsiPhi removed gap before (T0547)A121 # TweakPhi removed gap before (T0547)E240 # TweakPsiSubtree removed gap before (T0547)F144 # TweakPsiSubtree removed gap before (T0547)V522 # TweakPsiSubtree removed gap before (T0547)I538 # TweakPsiPhi removed gap before (T0547)A170 # TweakPhi removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)G604 # TweakPsiPhi removed gap before (T0547)K196 # TweakPsiSubtree removed gap before (T0547)S321 # TweakPsiSubtree removed gap before (T0547)N123 # TweakPhi removed gap before (T0547)G111 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Q424 # TweakPsiPhi removed gap before (T0547)G101 # TweakPsiPhi removed gap before (T0547)E346 # TweakPsiPhi removed gap before (T0547)E225 # TweakPhi removed gap before (T0547)N270 # TweakPhi removed gap before (T0547)L211 # TweakPhi removed gap before (T0547)E595 # TweakPsiSubtree removed gap before (T0547)A518 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)M450 # TweakPsiPhi removed gap before (T0547)N404 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L385 # TweakPhi removed gap before (T0547)A146 # TweakPsiPhi removed gap before (T0547)K76 # TweakPsiSubtree removed gap before (T0547)A326 # TweakPsiPhi removed gap before (T0547)D41 # generation 85: best score out of 40: T0547.try1-opt2 209.19920 cost/residue, 864 clashes 0.13515 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 106 58 / 293 = 0.19795 0.00436 ## JiggleSubtree 2 43 28 / 355 = 0.07887 0.00619 ## JiggleSegment 3 44 30 / 366 = 0.08197 0.00574 ## OptSubtree 0 0 0 / 79 = 0.00000 0.00000 ## OptSegment 0 1 1 / 183 = 0.00546 0.00191 ## OptAllSegments 0 0 0 / 76 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 78 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 65 = 0.00000 0.00000 ## TweakPhiSubtree 17 214 128 / 483 = 0.26501 0.00672 ## TweakPhiSegment 30 298 187 / 579 = 0.32297 0.00814 ## TweakPsiSubtree 0 203 154 / 538 = 0.28625 0.00732 ## TweakPsiSegment 1 260 158 / 600 = 0.26333 0.00828 ## TweakPsiPhiSubtree 45 209 128 / 418 = 0.30622 0.00542 ## TweakPsiPhiSegment 36 164 88 / 331 = 0.26586 0.00446 ## TweakHbondSubtree 7 137 90 / 409 = 0.22005 0.00554 ## TweakHbondSegment 3 148 76 / 377 = 0.20159 0.00483 ## TweakMultimer 95 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 61 38 / 124 = 0.30645 0.00094 ## FixOmega 0 0 0 / 66 = 0.00000 0.00000 ## Backrub 70 121 52 / 247 = 0.21053 0.00238 ## BigBackrub 48 42 24 / 168 = 0.14286 0.00250 ## OneRotamer 0 185 79 / 707 = 0.11174 0.00586 ## ClashingRotamer 1 3 1 / 128 = 0.00781 0.00102 ## ClusteredRotamer 13 4 2 / 123 = 0.01626 0.00094 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 165 = 0.00606 0.00016 ## CloseGap 0 19 6 / 231 = 0.02597 0.00707 ## HealGap 0 9 4 / 196 = 0.02041 0.00103 ## MoveGap 0 0 0 / 66 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 154 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 73 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 153 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 68 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 359 = 0.00000 0.00000 ## CrossOver 0 0 0 / 69 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 75 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)V436 # TweakPsiSubtree removed gap before (T0547)F530 # TweakPhi removed gap before (T0547)K76 # TweakPsiPhi removed gap before (T0547)A247 # TweakPsiSubtree removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)G42 # TweakPsiPhi removed gap before (T0547)Q433 # TweakPsiPhi removed gap before (T0547)Y565 # TweakPhi removed gap before (T0547)Q56 # TweakPhi removed gap before (T0547)V131 # TweakPsiSubtree removed gap before (T0547)D428 # TweakPhi removed gap before (T0547)T409 # TweakPhi removed gap before (T0547)Q342 # TweakPsiPhi removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)G42 # TweakPhi removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)A569 # TweakPsiPhi removed gap before (T0547)E26 # TweakPsiPhi removed gap before (T0547)D393 # TweakPsiPhi removed gap before (T0547)G517 # TweakPsiPhi removed gap before (T0547)H379 # TweakPhi removed gap before (T0547)G111 # TweakPhi removed gap before (T0547)K68 # TweakPhi removed gap before (T0547)G92 # TweakPhi removed gap before (T0547)I388 # TweakPsiSubtree removed gap before (T0547)I551 # TweakPhi removed gap before (T0547)L48 # TweakPsiSubtree removed gap before (T0547)L155 # TweakPsiPhi removed gap before (T0547)K493 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPhi removed gap before (T0547)M229 # TweakPsiSubtree removed gap before (T0547)R39 # TweakPhi removed gap before (T0547)T228 # TweakPsiPhi removed gap before (T0547)Q588 # TweakPhi removed gap before (T0547)G107 # TweakPsiPhi removed gap before (T0547)S387 # TweakPsiPhi removed gap before (T0547)D466 # TweakPsiSubtree removed gap before (T0547)Y440 # TweakPsiSubtree removed gap before (T0547)F498 # TweakPhi removed gap before (T0547)I317 # TweakPsiSubtree removed gap before (T0547)L468 # generation 86: best score out of 40: T0547.try1-opt2 209.16141 cost/residue, 865 clashes 0.13519 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 108 58 / 299 = 0.19398 0.00428 ## JiggleSubtree 2 44 28 / 357 = 0.07843 0.00615 ## JiggleSegment 3 44 30 / 368 = 0.08152 0.00571 ## OptSubtree 0 0 0 / 79 = 0.00000 0.00000 ## OptSegment 0 1 1 / 185 = 0.00541 0.00189 ## OptAllSegments 0 0 0 / 76 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 79 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 65 = 0.00000 0.00000 ## TweakPhiSubtree 18 217 132 / 489 = 0.26994 0.00678 ## TweakPhiSegment 30 304 190 / 589 = 0.32258 0.00810 ## TweakPsiSubtree 0 206 156 / 545 = 0.28624 0.00743 ## TweakPsiSegment 1 262 162 / 609 = 0.26601 0.00826 ## TweakPsiPhiSubtree 46 211 129 / 426 = 0.30282 0.00537 ## TweakPsiPhiSegment 36 165 90 / 336 = 0.26786 0.00442 ## TweakHbondSubtree 7 143 95 / 422 = 0.22512 0.00555 ## TweakHbondSegment 3 152 79 / 383 = 0.20627 0.00482 ## TweakMultimer 95 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 61 38 / 125 = 0.30400 0.00093 ## FixOmega 0 0 0 / 67 = 0.00000 0.00000 ## Backrub 70 122 53 / 248 = 0.21371 0.00237 ## BigBackrub 48 43 24 / 170 = 0.14118 0.00247 ## OneRotamer 0 185 79 / 711 = 0.11111 0.00583 ## ClashingRotamer 1 3 1 / 133 = 0.00752 0.00098 ## ClusteredRotamer 13 4 2 / 123 = 0.01626 0.00094 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 166 = 0.00602 0.00016 ## CloseGap 0 19 6 / 231 = 0.02597 0.00707 ## HealGap 0 9 4 / 196 = 0.02041 0.00103 ## MoveGap 0 0 0 / 66 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 154 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 75 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 154 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 69 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 363 = 0.00000 0.00000 ## CrossOver 0 0 0 / 69 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 75 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)G92 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L186 # TweakPsiSubtree removed gap before (T0547)E548 # TweakPhi removed gap before (T0547)H379 # TweakPsiPhi removed gap before (T0547)K414 # TweakPsiSubtree removed gap before (T0547)L244 # TweakPhi removed gap before (T0547)E488 # TweakPhi removed gap before (T0547)Q226 # TweakPsiSubtree removed gap before (T0547)E376 # TweakPsiSubtree removed gap before (T0547)A268 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPhi removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)L523 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPhi removed gap before (T0547)N425 # TweakPsiPhi removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPhi removed gap before (T0547)L116 # TweakPsiSubtree removed gap before (T0547)T228 # TweakPsiSubtree removed gap before (T0547)L391 # TweakPsiPhi removed gap before (T0547)E521 # TweakPsiSubtree removed gap before (T0547)F134 # TweakPsiPhi removed gap before (T0547)R402 # TweakPsiSubtree removed gap before (T0547)G594 # TweakPhi removed gap before (T0547)I212 # TweakPsiPhi removed gap before (T0547)E278 # TweakPsiPhi removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)K177 # TweakPsiSubtree removed gap before (T0547)V611 # TweakPsiSubtree removed gap before (T0547)K175 # TweakPsiPhi removed gap before (T0547)T473 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)M450 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G512 # TweakPsiPhi removed gap before (T0547)E26 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I180 # TweakPhi removed gap before (T0547)V184 # TweakPsiSubtree removed gap before (T0547)V516 # TweakPsiPhi removed gap before (T0547)L217 # TweakPhi removed gap before (T0547)D486 # TweakPhi removed gap before (T0547)H384 # generation 87: best score out of 40: T0547.try1-opt2 209.03821 cost/residue, 864 clashes 0.13487 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 110 60 / 303 = 0.19802 0.00472 ## JiggleSubtree 2 44 28 / 358 = 0.07821 0.00613 ## JiggleSegment 3 44 30 / 371 = 0.08086 0.00566 ## OptSubtree 0 0 0 / 79 = 0.00000 0.00000 ## OptSegment 0 1 1 / 186 = 0.00538 0.00188 ## OptAllSegments 0 0 0 / 76 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 79 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 66 = 0.00000 0.00000 ## TweakPhiSubtree 18 219 133 / 494 = 0.26923 0.00674 ## TweakPhiSegment 30 311 194 / 601 = 0.32280 0.00817 ## TweakPsiSubtree 0 207 159 / 553 = 0.28752 0.00739 ## TweakPsiSegment 1 265 166 / 618 = 0.26861 0.00816 ## TweakPsiPhiSubtree 47 213 130 / 429 = 0.30303 0.00541 ## TweakPsiPhiSegment 37 168 92 / 344 = 0.26744 0.00451 ## TweakHbondSubtree 7 144 96 / 429 = 0.22378 0.00559 ## TweakHbondSegment 3 156 82 / 387 = 0.21189 0.00528 ## TweakMultimer 95 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 62 39 / 127 = 0.30709 0.00095 ## FixOmega 0 0 0 / 68 = 0.00000 0.00000 ## Backrub 74 125 54 / 252 = 0.21429 0.00236 ## BigBackrub 48 44 24 / 172 = 0.13953 0.00245 ## OneRotamer 0 186 80 / 720 = 0.11111 0.00580 ## ClashingRotamer 1 3 1 / 136 = 0.00735 0.00096 ## ClusteredRotamer 13 4 2 / 123 = 0.01626 0.00094 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 169 = 0.00592 0.00016 ## CloseGap 0 19 6 / 231 = 0.02597 0.00707 ## HealGap 0 9 4 / 197 = 0.02030 0.00102 ## MoveGap 0 0 0 / 67 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 156 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 77 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 155 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 69 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 366 = 0.00000 0.00000 ## CrossOver 0 0 0 / 69 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 75 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)L211 # TweakPsiSubtree removed gap before (T0547)N404 # TweakPhi removed gap before (T0547)G143 # TweakPsiSubtree removed gap before (T0547)N65 # TweakPsiSubtree removed gap before (T0547)G604 # TweakPsiSubtree removed gap before (T0547)S368 # TweakPsiSubtree removed gap before (T0547)L499 # TweakPhi removed gap before (T0547)K76 # TweakPsiSubtree removed gap before (T0547)I16 # TweakPhi removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)R577 # TweakPhi removed gap before (T0547)M261 # TweakPhi removed gap before (T0547)G19 # TweakPsiPhi removed gap before (T0547)I59 # TweakPsiSubtree removed gap before (T0547)Y295 # TweakPsiSubtree removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)I23 # TweakPhi removed gap before (T0547)G524 # TweakPsiPhi removed gap before (T0547)F227 # TweakPsiSubtree removed gap before (T0547)E257 # Closed gap before (T0547)T154 # TweakPhi removed gap before (T0547)L49 # TweakPsiSubtree removed gap before (T0547)A427 # TweakPhi removed gap before (T0547)V35 # TweakPsiSubtree removed gap before (T0547)K86 # TweakPsiPhi removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)I254 # TweakPsiSubtree removed gap before (T0547)G77 # TweakPhi removed gap before (T0547)F51 # TweakPsiSubtree removed gap before (T0547)Q237 # TweakPhi removed gap before (T0547)F14 # TweakPsiPhi removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)V191 # TweakPhi removed gap before (T0547)G198 # TweakPhi removed gap before (T0547)I417 # TweakPhi removed gap before (T0547)N179 # TweakPsiPhi removed gap before (T0547)K76 # TweakPsiSubtree removed gap before (T0547)N459 # TweakPhi removed gap before (T0547)S403 # TweakPsiPhi removed gap before (T0547)V522 # TweakPsiPhi removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)P46 # generation 88: best score out of 40: T0547.try1-opt2 208.97130 cost/residue, 861 clashes 0.13483 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 112 60 / 307 = 0.19544 0.00466 ## JiggleSubtree 2 44 28 / 359 = 0.07799 0.00612 ## JiggleSegment 3 44 30 / 374 = 0.08021 0.00562 ## OptSubtree 0 0 0 / 80 = 0.00000 0.00000 ## OptSegment 0 1 1 / 189 = 0.00529 0.00185 ## OptAllSegments 0 0 0 / 76 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 79 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 66 = 0.00000 0.00000 ## TweakPhiSubtree 19 219 133 / 496 = 0.26815 0.00672 ## TweakPhiSegment 30 316 196 / 616 = 0.31818 0.00812 ## TweakPsiSubtree 1 210 159 / 562 = 0.28292 0.00727 ## TweakPsiSegment 1 268 168 / 627 = 0.26794 0.00809 ## TweakPsiPhiSubtree 47 214 131 / 432 = 0.30324 0.00539 ## TweakPsiPhiSegment 37 171 92 / 348 = 0.26437 0.00446 ## TweakHbondSubtree 7 145 96 / 437 = 0.21968 0.00549 ## TweakHbondSegment 3 156 82 / 394 = 0.20812 0.00518 ## TweakMultimer 97 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 62 39 / 127 = 0.30709 0.00095 ## FixOmega 0 0 0 / 68 = 0.00000 0.00000 ## Backrub 74 130 56 / 260 = 0.21538 0.00231 ## BigBackrub 48 44 24 / 173 = 0.13873 0.00243 ## OneRotamer 0 188 81 / 727 = 0.11142 0.00579 ## ClashingRotamer 1 3 1 / 136 = 0.00735 0.00096 ## ClusteredRotamer 14 4 2 / 123 = 0.01626 0.00094 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 170 = 0.00588 0.00015 ## CloseGap 0 19 6 / 233 = 0.02575 0.00701 ## HealGap 0 9 4 / 197 = 0.02030 0.00102 ## MoveGap 0 0 0 / 68 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 158 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 78 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 157 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 70 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 369 = 0.00000 0.00000 ## CrossOver 0 0 0 / 71 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 75 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)H233 # TweakPhi removed gap before (T0547)M261 # TweakPhi removed gap before (T0547)K71 # TweakPsiSubtree removed gap before (T0547)D33 # TweakPsiSubtree removed gap before (T0547)D466 # TweakPsiPhi removed gap before (T0547)A119 # TweakPsiPhi removed gap before (T0547)L358 # TweakPsiPhi removed gap before (T0547)G205 # TweakPsiSubtree removed gap before (T0547)G262 # TweakPsiSubtree removed gap before (T0547)M2 # TweakPhi removed gap before (T0547)S188 # TweakPsiPhi removed gap before (T0547)A427 # TweakPsiPhi removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)I169 # TweakPsiSubtree removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)D494 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)F514 # TweakPsiPhi removed gap before (T0547)K219 # TweakPhi removed gap before (T0547)E435 # TweakPhi removed gap before (T0547)V131 # TweakPsiSubtree removed gap before (T0547)N249 # TweakPhi removed gap before (T0547)D501 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A119 # TweakPsiSubtree removed gap before (T0547)N404 # TweakPhi removed gap before (T0547)E507 # TweakPsiPhi removed gap before (T0547)A518 # TweakPhi removed gap before (T0547)Q226 # TweakPhi removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)L47 # TweakPhi removed gap before (T0547)N443 # TweakPsiPhi removed gap before (T0547)I169 # BackrubGuts cancelled, second residue peptide plane wrong length # generation 89: best score out of 40: T0547.try1-opt2 208.89961 cost/residue, 863 clashes 0.13500 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 118 64 / 320 = 0.20000 0.00451 ## JiggleSubtree 2 44 28 / 361 = 0.07756 0.00608 ## JiggleSegment 3 44 30 / 377 = 0.07958 0.00557 ## OptSubtree 0 0 0 / 81 = 0.00000 0.00000 ## OptSegment 0 1 1 / 190 = 0.00526 0.00184 ## OptAllSegments 0 0 0 / 76 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 79 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 66 = 0.00000 0.00000 ## TweakPhiSubtree 19 223 134 / 502 = 0.26693 0.00712 ## TweakPhiSegment 31 321 199 / 626 = 0.31789 0.00808 ## TweakPsiSubtree 1 213 160 / 569 = 0.28120 0.00725 ## TweakPsiSegment 1 272 170 / 634 = 0.26814 0.00827 ## TweakPsiPhiSubtree 47 218 133 / 438 = 0.30365 0.00545 ## TweakPsiPhiSegment 40 171 92 / 351 = 0.26211 0.00442 ## TweakHbondSubtree 7 147 98 / 445 = 0.22022 0.00568 ## TweakHbondSegment 4 158 83 / 403 = 0.20596 0.00546 ## TweakMultimer 100 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 62 39 / 127 = 0.30709 0.00095 ## FixOmega 0 0 0 / 68 = 0.00000 0.00000 ## Backrub 76 130 56 / 263 = 0.21293 0.00228 ## BigBackrub 49 44 24 / 177 = 0.13559 0.00238 ## OneRotamer 0 189 81 / 734 = 0.11035 0.00574 ## ClashingRotamer 1 3 1 / 138 = 0.00725 0.00095 ## ClusteredRotamer 14 4 2 / 125 = 0.01600 0.00092 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 170 = 0.00588 0.00015 ## CloseGap 0 19 6 / 233 = 0.02575 0.00701 ## HealGap 0 9 4 / 197 = 0.02030 0.00102 ## MoveGap 0 0 0 / 68 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 158 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 78 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 158 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 71 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 371 = 0.00000 0.00000 ## CrossOver 0 0 0 / 73 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 75 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)G272 # TweakPsiSubtree removed gap before (T0547)I32 # TweakPsiPhi removed gap before (T0547)G198 # TweakPhi removed gap before (T0547)S341 # TweakPsiSubtree removed gap before (T0547)I241 # TweakPhi removed gap before (T0547)R474 # TweakPhi removed gap before (T0547)R259 # TweakPsiPhi removed gap before (T0547)A431 # TweakPsiPhi removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)E12 # TweakPsiPhi removed gap before (T0547)I319 # TweakPsiPhi removed gap before (T0547)I6 # TweakPsiPhi removed gap before (T0547)E314 # TweakPsiPhi removed gap before (T0547)K607 # TweakPsiSubtree removed gap before (T0547)K219 # TweakPsiSubtree removed gap before (T0547)G64 # TweakPhi removed gap before (T0547)K357 # TweakPsiSubtree removed gap before (T0547)L411 # TweakPhi removed gap before (T0547)L182 # TweakPsiPhi removed gap before (T0547)S197 # TweakPsiSubtree removed gap before (T0547)P356 # TweakPhi removed gap before (T0547)I241 # TweakPsiPhi removed gap before (T0547)D494 # TweakPsiPhi removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)E37 # TweakPhi removed gap before (T0547)E552 # TweakPsiSubtree removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)T207 # TweakPsiSubtree removed gap before (T0547)I153 # TweakPsiSubtree removed gap before (T0547)F93 # TweakPsiPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)L258 # generation 90: best score out of 40: T0547.try1-opt2 208.88702 cost/residue, 863 clashes 0.13495 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 119 64 / 324 = 0.19753 0.00446 ## JiggleSubtree 2 44 28 / 362 = 0.07735 0.00607 ## JiggleSegment 3 45 31 / 381 = 0.08136 0.00559 ## OptSubtree 0 0 0 / 84 = 0.00000 0.00000 ## OptSegment 0 1 1 / 194 = 0.00515 0.00181 ## OptAllSegments 0 0 0 / 76 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 79 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 66 = 0.00000 0.00000 ## TweakPhiSubtree 19 224 135 / 509 = 0.26523 0.00705 ## TweakPhiSegment 31 324 201 / 630 = 0.31905 0.00807 ## TweakPsiSubtree 1 213 160 / 573 = 0.27923 0.00720 ## TweakPsiSegment 1 275 175 / 642 = 0.27259 0.00827 ## TweakPsiPhiSubtree 49 221 133 / 444 = 0.29955 0.00538 ## TweakPsiPhiSegment 40 173 92 / 356 = 0.25843 0.00436 ## TweakHbondSubtree 7 150 100 / 455 = 0.21978 0.00563 ## TweakHbondSegment 4 165 88 / 413 = 0.21308 0.00587 ## TweakMultimer 101 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 63 40 / 128 = 0.31250 0.00099 ## FixOmega 0 0 0 / 69 = 0.00000 0.00000 ## Backrub 76 131 56 / 265 = 0.21132 0.00226 ## BigBackrub 49 45 25 / 180 = 0.13889 0.00237 ## OneRotamer 0 193 84 / 742 = 0.11321 0.00587 ## ClashingRotamer 1 3 1 / 139 = 0.00719 0.00094 ## ClusteredRotamer 14 4 2 / 126 = 0.01587 0.00091 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 171 = 0.00585 0.00015 ## CloseGap 0 19 6 / 234 = 0.02564 0.00698 ## HealGap 0 9 4 / 199 = 0.02010 0.00101 ## MoveGap 0 0 0 / 69 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 160 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 78 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 159 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 71 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 376 = 0.00000 0.00000 ## CrossOver 0 0 0 / 73 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 75 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)H410 # TweakPsiSubtree removed gap before (T0547)V436 # TweakPhi removed gap before (T0547)G198 # TweakPhi removed gap before (T0547)L271 # TweakPhi removed gap before (T0547)I609 # TweakPhi removed gap before (T0547)R173 # TweakPsiSubtree removed gap before (T0547)P128 # TweakPsiSubtree removed gap before (T0547)K423 # TweakPhi removed gap before (T0547)I432 # TweakPhi removed gap before (T0547)N284 # TweakPhi removed gap before (T0547)I538 # TweakPsiSubtree removed gap before (T0547)Q400 # TweakPsiSubtree removed gap before (T0547)A165 # TweakPhi removed gap before (T0547)K71 # TweakPsiPhi removed gap before (T0547)V277 # TweakPsiSubtree removed gap before (T0547)A345 # TweakPhi removed gap before (T0547)L337 # TweakPsiPhi removed gap before (T0547)I382 # TweakPhi removed gap before (T0547)D364 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPsiSubtree removed gap before (T0547)V516 # TweakPsiSubtree removed gap before (T0547)D360 # TweakPhi removed gap before (T0547)V516 # TweakPsiSubtree removed gap before (T0547)N201 # TweakPhi removed gap before (T0547)N355 # TweakPhi removed gap before (T0547)I369 # TweakPsiSubtree removed gap before (T0547)L583 # TweakPhi removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)N24 # TweakPhi removed gap before (T0547)V516 # TweakPsiPhi removed gap before (T0547)A330 # TweakPsiPhi removed gap before (T0547)S287 # TweakPhi removed gap before (T0547)H233 # TweakPsiSubtree removed gap before (T0547)D452 # TweakPsiSubtree removed gap before (T0547)L139 # TweakPhi removed gap before (T0547)L419 # TweakPsiSubtree removed gap before (T0547)I241 # TweakPsiSubtree removed gap before (T0547)A330 # TweakPhi removed gap before (T0547)I193 # TweakPsiPhi removed gap before (T0547)E72 # TweakPsiPhi removed gap before (T0547)A263 # generation 91: best score out of 40: T0547.try1-opt2 208.70883 cost/residue, 855 clashes 0.13380 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 121 66 / 332 = 0.19880 0.00446 ## JiggleSubtree 2 44 28 / 364 = 0.07692 0.00603 ## JiggleSegment 3 45 31 / 382 = 0.08115 0.00558 ## OptSubtree 0 0 0 / 84 = 0.00000 0.00000 ## OptSegment 0 1 1 / 196 = 0.00510 0.00179 ## OptAllSegments 0 0 0 / 76 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 79 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 67 = 0.00000 0.00000 ## TweakPhiSubtree 19 227 136 / 521 = 0.26104 0.00694 ## TweakPhiSegment 31 326 201 / 638 = 0.31505 0.00797 ## TweakPsiSubtree 1 215 161 / 579 = 0.27807 0.00716 ## TweakPsiSegment 1 282 179 / 656 = 0.27287 0.00844 ## TweakPsiPhiSubtree 50 222 134 / 448 = 0.29911 0.00545 ## TweakPsiPhiSegment 41 175 94 / 359 = 0.26184 0.00440 ## TweakHbondSubtree 8 152 102 / 459 = 0.22222 0.00559 ## TweakHbondSegment 5 167 90 / 417 = 0.21583 0.00583 ## TweakMultimer 104 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 65 41 / 133 = 0.30827 0.00098 ## FixOmega 0 0 0 / 69 = 0.00000 0.00000 ## Backrub 76 133 59 / 270 = 0.21852 0.00231 ## BigBackrub 49 45 25 / 181 = 0.13812 0.00235 ## OneRotamer 0 193 84 / 750 = 0.11200 0.00580 ## ClashingRotamer 1 3 1 / 140 = 0.00714 0.00093 ## ClusteredRotamer 14 4 2 / 126 = 0.01587 0.00091 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 171 = 0.00585 0.00015 ## CloseGap 0 19 6 / 234 = 0.02564 0.00698 ## HealGap 0 9 4 / 200 = 0.02000 0.00101 ## MoveGap 0 0 0 / 70 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 160 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 80 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 162 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 72 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 378 = 0.00000 0.00000 ## CrossOver 0 0 0 / 73 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 76 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)D41 # TweakPhi removed gap before (T0547)I140 # TweakPsiPhi removed gap before (T0547)A147 # TweakPsiSubtree removed gap before (T0547)F144 # TweakPsiSubtree removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)L408 # TweakPsiPhi removed gap before (T0547)E125 # TweakPsiSubtree removed gap before (T0547)K286 # TweakPsiSubtree removed gap before (T0547)Q437 # TweakPhi removed gap before (T0547)W9 # TweakPhi removed gap before (T0547)K135 # TweakPhi removed gap before (T0547)V516 # TweakPsiSubtree removed gap before (T0547)G487 # TweakPsiPhi removed gap before (T0547)V547 # TweakPsiSubtree removed gap before (T0547)G77 # TweakPsiSubtree removed gap before (T0547)V184 # TweakPhi removed gap before (T0547)K246 # TweakPsiSubtree removed gap before (T0547)I16 # TweakPsiSubtree removed gap before (T0547)F301 # TweakPsiSubtree removed gap before (T0547)D401 # TweakPhi removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)K310 # TweakPhi removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)Y90 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPhi removed gap before (T0547)V21 # TweakPhi removed gap before (T0547)L155 # TweakPsiSubtree removed gap before (T0547)S368 # TweakPsiPhi removed gap before (T0547)L186 # TweakPsiPhi removed gap before (T0547)Y83 # TweakPhi removed gap before (T0547)L600 # TweakPhi removed gap before (T0547)N253 # TweakPhi removed gap before (T0547)N61 # generation 92: best score out of 40: T0547.try1-opt2 208.70084 cost/residue, 855 clashes 0.13380 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 125 69 / 343 = 0.20117 0.00435 ## JiggleSubtree 2 44 28 / 364 = 0.07692 0.00603 ## JiggleSegment 3 45 31 / 384 = 0.08073 0.00555 ## OptSubtree 0 0 0 / 84 = 0.00000 0.00000 ## OptSegment 0 1 1 / 197 = 0.00508 0.00178 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 82 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 67 = 0.00000 0.00000 ## TweakPhiSubtree 19 227 136 / 527 = 0.25806 0.00686 ## TweakPhiSegment 32 327 202 / 644 = 0.31366 0.00791 ## TweakPsiSubtree 1 219 165 / 586 = 0.28157 0.00722 ## TweakPsiSegment 1 285 180 / 664 = 0.27108 0.00836 ## TweakPsiPhiSubtree 51 222 134 / 452 = 0.29646 0.00541 ## TweakPsiPhiSegment 41 177 96 / 363 = 0.26446 0.00436 ## TweakHbondSubtree 8 153 103 / 466 = 0.22103 0.00559 ## TweakHbondSegment 5 173 92 / 430 = 0.21395 0.00568 ## TweakMultimer 105 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 66 41 / 134 = 0.30597 0.00097 ## FixOmega 0 0 0 / 70 = 0.00000 0.00000 ## Backrub 76 133 59 / 272 = 0.21691 0.00230 ## BigBackrub 49 46 25 / 186 = 0.13441 0.00229 ## OneRotamer 0 194 85 / 755 = 0.11258 0.00585 ## ClashingRotamer 1 3 1 / 141 = 0.00709 0.00093 ## ClusteredRotamer 14 4 2 / 127 = 0.01575 0.00091 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 172 = 0.00581 0.00015 ## CloseGap 0 19 6 / 234 = 0.02564 0.00698 ## HealGap 0 9 4 / 202 = 0.01980 0.00100 ## MoveGap 0 0 0 / 71 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 161 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 81 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 164 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 72 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 380 = 0.00000 0.00000 ## CrossOver 0 0 0 / 73 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 77 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)D393 # TweakPhi removed gap before (T0547)A247 # TweakPhi removed gap before (T0547)F453 # TweakPhi removed gap before (T0547)K219 # TweakPsiSubtree removed gap before (T0547)K283 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)V584 # TweakPhi removed gap before (T0547)L515 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)E561 # TweakPsiPhi removed gap before (T0547)H591 # TweakPhi removed gap before (T0547)L275 # TweakPsiPhi removed gap before (T0547)R288 # TweakPhi removed gap before (T0547)V21 # TweakPsiSubtree removed gap before (T0547)L391 # TweakPhi removed gap before (T0547)K95 # TweakPsiSubtree removed gap before (T0547)K27 # TweakPsiSubtree removed gap before (T0547)L211 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)Y295 # TweakPsiPhi removed gap before (T0547)D33 # TweakPhi removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)L54 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)D383 # TweakPhi removed gap before (T0547)I302 # TweakPhi removed gap before (T0547)K589 # TweakPsiPhi removed gap before (T0547)L116 # TweakPsiSubtree removed gap before (T0547)E37 # TweakPsiSubtree removed gap before (T0547)A189 # TweakPsiPhi removed gap before (T0547)R402 # TweakPhi removed gap before (T0547)K20 # TweakPsiPhi removed gap before (T0547)A114 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V184 # TweakPhi removed gap before (T0547)K607 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPhi removed gap before (T0547)C22 # TweakPsiPhi removed gap before (T0547)D503 # TweakPsiSubtree removed gap before (T0547)L375 # TweakPsiPhi removed gap before (T0547)D452 # TweakPsiSubtree removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)S381 # TweakPhi removed gap before (T0547)A69 # generation 93: best score out of 40: T0547.try1-opt2 208.59961 cost/residue, 852 clashes 0.13367 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 127 69 / 347 = 0.19885 0.00430 ## JiggleSubtree 2 44 28 / 365 = 0.07671 0.00602 ## JiggleSegment 3 45 31 / 385 = 0.08052 0.00554 ## OptSubtree 0 0 0 / 84 = 0.00000 0.00000 ## OptSegment 0 1 1 / 197 = 0.00508 0.00178 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 84 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 69 = 0.00000 0.00000 ## TweakPhiSubtree 19 229 137 / 534 = 0.25655 0.00678 ## TweakPhiSegment 32 329 204 / 652 = 0.31288 0.00790 ## TweakPsiSubtree 1 223 166 / 597 = 0.27806 0.00709 ## TweakPsiSegment 1 288 183 / 674 = 0.27151 0.00828 ## TweakPsiPhiSubtree 51 225 136 / 459 = 0.29630 0.00542 ## TweakPsiPhiSegment 42 179 98 / 365 = 0.26849 0.00438 ## TweakHbondSubtree 9 155 104 / 473 = 0.21987 0.00574 ## TweakHbondSegment 5 175 92 / 435 = 0.21149 0.00561 ## TweakMultimer 108 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 9 66 41 / 136 = 0.30147 0.00096 ## FixOmega 0 0 0 / 70 = 0.00000 0.00000 ## Backrub 78 134 60 / 275 = 0.21818 0.00230 ## BigBackrub 52 46 25 / 188 = 0.13298 0.00227 ## OneRotamer 0 198 89 / 768 = 0.11589 0.00591 ## ClashingRotamer 1 3 1 / 143 = 0.00699 0.00091 ## ClusteredRotamer 14 4 2 / 127 = 0.01575 0.00091 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 173 = 0.00578 0.00015 ## CloseGap 0 19 6 / 234 = 0.02564 0.00698 ## HealGap 0 9 4 / 206 = 0.01942 0.00098 ## MoveGap 0 0 0 / 71 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 162 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 81 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 165 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 73 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 381 = 0.00000 0.00000 ## CrossOver 0 0 0 / 74 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 78 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)F73 # TweakPsiSubtree removed gap before (T0547)R577 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I16 # TweakPsiPhi removed gap before (T0547)V547 # TweakPsiSubtree removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)A431 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)L583 # TweakPhi removed gap before (T0547)N425 # TweakPhi removed gap before (T0547)I157 # TweakPsiSubtree removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)I34 # TweakPhi removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)V21 # TweakPsiSubtree removed gap before (T0547)G181 # TweakPhi removed gap before (T0547)A147 # TweakPhi removed gap before (T0547)E225 # TweakPhi removed gap before (T0547)R323 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPsiSubtree removed gap before (T0547)F134 # TweakPsiSubtree removed gap before (T0547)V547 # TweakPhi removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPhi removed gap before (T0547)L399 # TweakPsiPhi removed gap before (T0547)I412 # TweakPhi removed gap before (T0547)K203 # TweakPsiSubtree removed gap before (T0547)K357 # TweakPsiPhi removed gap before (T0547)I212 # TweakPhi removed gap before (T0547)I31 # TweakPsiSubtree removed gap before (T0547)I306 # TweakPsiPhi removed gap before (T0547)C22 # TweakPsiPhi removed gap before (T0547)M525 # TweakPsiPhi removed gap before (T0547)F444 # TweakPhi removed gap before (T0547)S579 # TweakPhi removed gap before (T0547)N18 # TweakPsiSubtree removed gap before (T0547)K357 # TweakPhi removed gap before (T0547)F453 # TweakPsiPhi removed gap before (T0547)G133 # TweakPsiSubtree removed gap before (T0547)L223 # TweakPhi removed gap before (T0547)Y295 # TweakPhi removed gap before (T0547)L206 # TweakPsiSubtree removed gap before (T0547)L419 # TweakPhi removed gap before (T0547)Q554 # generation 94: best score out of 40: T0547.try1-opt2 208.55699 cost/residue, 851 clashes 0.13376 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 129 70 / 352 = 0.19886 0.00428 ## JiggleSubtree 2 44 28 / 366 = 0.07650 0.00600 ## JiggleSegment 3 45 31 / 386 = 0.08031 0.00552 ## OptSubtree 0 0 0 / 85 = 0.00000 0.00000 ## OptSegment 0 1 1 / 198 = 0.00505 0.00177 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 85 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 69 = 0.00000 0.00000 ## TweakPhiSubtree 19 232 138 / 538 = 0.25651 0.00673 ## TweakPhiSegment 32 333 210 / 668 = 0.31437 0.00783 ## TweakPsiSubtree 1 226 168 / 609 = 0.27586 0.00706 ## TweakPsiSegment 1 291 184 / 681 = 0.27019 0.00821 ## TweakPsiPhiSubtree 51 227 136 / 464 = 0.29310 0.00536 ## TweakPsiPhiSegment 44 180 98 / 368 = 0.26630 0.00435 ## TweakHbondSubtree 9 158 106 / 484 = 0.21901 0.00585 ## TweakHbondSegment 5 177 93 / 441 = 0.21088 0.00556 ## TweakMultimer 109 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 9 67 43 / 139 = 0.30935 0.00105 ## FixOmega 0 0 0 / 70 = 0.00000 0.00000 ## Backrub 79 135 61 / 277 = 0.22022 0.00233 ## BigBackrub 53 46 25 / 190 = 0.13158 0.00224 ## OneRotamer 0 199 90 / 777 = 0.11583 0.00587 ## ClashingRotamer 1 3 1 / 143 = 0.00699 0.00091 ## ClusteredRotamer 14 4 2 / 127 = 0.01575 0.00091 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 173 = 0.00578 0.00015 ## CloseGap 0 19 6 / 234 = 0.02564 0.00698 ## HealGap 0 9 4 / 207 = 0.01932 0.00097 ## MoveGap 0 0 0 / 71 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 163 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 82 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 166 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 73 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 385 = 0.00000 0.00000 ## CrossOver 0 0 0 / 75 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 79 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)K607 # TweakPhi removed gap before (T0547)Q437 # TweakPsiPhi removed gap before (T0547)R183 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I167 # TweakPsiSubtree removed gap before (T0547)N601 # TweakPhi removed gap before (T0547)V35 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPsiSubtree removed gap before (T0547)T209 # TweakPsiSubtree removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)M525 # TweakPhi removed gap before (T0547)Y25 # TweakPhi removed gap before (T0547)G272 # TweakPhi removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)E257 # TweakPhi removed gap before (T0547)V516 # TweakPsiSubtree removed gap before (T0547)Y255 # TweakPsiPhi removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)Q237 # TweakPhi removed gap before (T0547)A296 # TweakPsiSubtree removed gap before (T0547)K86 # TweakPsiSubtree removed gap before (T0547)E60 # TweakPsiSubtree removed gap before (T0547)K582 # TweakPsiPhi removed gap before (T0547)Q309 # TweakPsiSubtree removed gap before (T0547)F599 # TweakPsiPhi removed gap before (T0547)L49 # TweakPsiSubtree removed gap before (T0547)I382 # TweakPhi removed gap before (T0547)F447 # TweakPsiPhi removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)I333 # TweakPsiSubtree removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)S581 # TweakPsiSubtree removed gap before (T0547)F444 # TweakPhi removed gap before (T0547)K71 # TweakPsiSubtree removed gap before (T0547)I432 # generation 95: best score out of 40: T0547.try1-opt2 208.39746 cost/residue, 850 clashes 0.13378 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 131 72 / 362 = 0.19890 0.00425 ## JiggleSubtree 2 44 28 / 370 = 0.07568 0.00594 ## JiggleSegment 3 45 31 / 387 = 0.08010 0.00551 ## OptSubtree 0 0 0 / 85 = 0.00000 0.00000 ## OptSegment 0 1 1 / 198 = 0.00505 0.00177 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 85 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 70 = 0.00000 0.00000 ## TweakPhiSubtree 19 232 138 / 543 = 0.25414 0.00667 ## TweakPhiSegment 32 337 211 / 675 = 0.31259 0.00776 ## TweakPsiSubtree 1 227 168 / 611 = 0.27496 0.00704 ## TweakPsiSegment 1 298 193 / 699 = 0.27611 0.00831 ## TweakPsiPhiSubtree 52 229 137 / 466 = 0.29399 0.00548 ## TweakPsiPhiSegment 44 182 100 / 373 = 0.26810 0.00440 ## TweakHbondSubtree 9 162 110 / 495 = 0.22222 0.00592 ## TweakHbondSegment 5 179 95 / 448 = 0.21205 0.00553 ## TweakMultimer 110 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 9 68 44 / 141 = 0.31206 0.00106 ## FixOmega 1 0 0 / 71 = 0.00000 0.00000 ## Backrub 79 138 63 / 280 = 0.22500 0.00239 ## BigBackrub 54 46 25 / 191 = 0.13089 0.00223 ## OneRotamer 0 203 92 / 791 = 0.11631 0.00614 ## ClashingRotamer 1 3 1 / 143 = 0.00699 0.00091 ## ClusteredRotamer 14 4 2 / 128 = 0.01562 0.00090 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 174 = 0.00575 0.00015 ## CloseGap 0 19 6 / 234 = 0.02564 0.00698 ## HealGap 0 9 4 / 207 = 0.01932 0.00097 ## MoveGap 0 0 0 / 72 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 163 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 82 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 167 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 74 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 386 = 0.00000 0.00000 ## CrossOver 0 0 0 / 75 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 79 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)N18 # TweakPsiPhi removed gap before (T0547)S368 # TweakPsiSubtree removed gap before (T0547)D393 # TweakPhi removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiSubtree removed gap before (T0547)K175 # TweakPhi removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)A427 # TweakPhi removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)I556 # TweakPhi removed gap before (T0547)I32 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPsiSubtree removed gap before (T0547)W479 # TweakPsiPhi removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)L497 # TweakPsiPhi removed gap before (T0547)R70 # TweakPsiSubtree removed gap before (T0547)M2 # TweakPhi removed gap before (T0547)L375 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPsiSubtree removed gap before (T0547)G133 # TweakPhi removed gap before (T0547)L224 # TweakPsiSubtree removed gap before (T0547)D364 # TweakPsiPhi removed gap before (T0547)Y366 # TweakPhi removed gap before (T0547)Q89 # TweakPsiSubtree removed gap before (T0547)G64 # TweakPhi removed gap before (T0547)G42 # TweakPhi removed gap before (T0547)Y279 # TweakPsiSubtree removed gap before (T0547)N123 # TweakPsiPhi removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)E12 # TweakPsiSubtree removed gap before (T0547)E60 # TweakPhi removed gap before (T0547)L248 # TweakPhi removed gap before (T0547)K135 # TweakPsiPhi removed gap before (T0547)H384 # TweakPsiSubtree removed gap before (T0547)L258 # TweakPhi removed gap before (T0547)K260 # TweakPsiSubtree removed gap before (T0547)K423 # TweakPhi removed gap before (T0547)F134 # TweakPhi removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)H187 # generation 96: best score out of 40: T0547.try1-opt2 208.35226 cost/residue, 847 clashes 0.13401 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 133 73 / 368 = 0.19837 0.00419 ## JiggleSubtree 2 44 28 / 370 = 0.07568 0.00594 ## JiggleSegment 3 46 32 / 388 = 0.08247 0.00561 ## OptSubtree 0 0 0 / 86 = 0.00000 0.00000 ## OptSegment 0 1 1 / 201 = 0.00498 0.00174 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 85 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 70 = 0.00000 0.00000 ## TweakPhiSubtree 19 233 138 / 548 = 0.25182 0.00661 ## TweakPhiSegment 33 345 216 / 688 = 0.31395 0.00783 ## TweakPsiSubtree 1 228 168 / 618 = 0.27184 0.00696 ## TweakPsiSegment 1 302 196 / 709 = 0.27645 0.00824 ## TweakPsiPhiSubtree 54 230 138 / 468 = 0.29487 0.00548 ## TweakPsiPhiSegment 44 183 100 / 379 = 0.26385 0.00433 ## TweakHbondSubtree 9 163 112 / 502 = 0.22311 0.00592 ## TweakHbondSegment 6 181 96 / 455 = 0.21099 0.00545 ## TweakMultimer 112 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 9 71 47 / 146 = 0.32192 0.00110 ## FixOmega 1 0 0 / 72 = 0.00000 0.00000 ## Backrub 79 141 64 / 287 = 0.22300 0.00238 ## BigBackrub 54 46 25 / 191 = 0.13089 0.00223 ## OneRotamer 0 204 93 / 799 = 0.11640 0.00610 ## ClashingRotamer 1 3 1 / 143 = 0.00699 0.00091 ## ClusteredRotamer 14 4 2 / 129 = 0.01550 0.00089 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 175 = 0.00571 0.00015 ## CloseGap 0 19 6 / 234 = 0.02564 0.00698 ## HealGap 0 9 4 / 207 = 0.01932 0.00097 ## MoveGap 0 0 0 / 72 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 166 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 82 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 167 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 74 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 391 = 0.00000 0.00000 ## CrossOver 0 0 0 / 75 = 0.00000 0.00000 ## DoubleCross 0 0 0 / 11 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 79 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)D380 # TweakPhi removed gap before (T0547)G544 # TweakPsiSubtree removed gap before (T0547)F232 # TweakPhi removed gap before (T0547)L560 # TweakPhi removed gap before (T0547)I556 # TweakPhi removed gap before (T0547)Q237 # TweakPsiSubtree removed gap before (T0547)R288 # TweakPhi removed gap before (T0547)L108 # TweakPsiPhi removed gap before (T0547)F392 # TweakPsiSubtree removed gap before (T0547)S445 # TweakPhi removed gap before (T0547)S368 # TweakPsiPhi removed gap before (T0547)K311 # TweakPhi removed gap before (T0547)I306 # TweakPsiSubtree removed gap before (T0547)T209 # TweakPhi removed gap before (T0547)K370 # TweakPhi removed gap before (T0547)L420 # TweakPsiSubtree removed gap before (T0547)R467 # TweakPsiSubtree removed gap before (T0547)G272 # TweakPhi removed gap before (T0547)E488 # TweakPsiSubtree removed gap before (T0547)D486 # TweakPhi removed gap before (T0547)D566 # TweakPsiSubtree removed gap before (T0547)S475 # TweakPsiPhi removed gap before (T0547)D566 # TweakPsiPhi removed gap before (T0547)Q424 # TweakPhi removed gap before (T0547)I551 # TweakPhi removed gap before (T0547)A165 # TweakPsiSubtree removed gap before (T0547)T256 # TweakPhi removed gap before (T0547)F392 # TweakPsiSubtree removed gap before (T0547)W454 # TweakPsiSubtree removed gap before (T0547)F514 # TweakPsiSubtree removed gap before (T0547)K219 # TweakPsiSubtree removed gap before (T0547)Y519 # TweakPsiSubtree removed gap before (T0547)G126 # TweakPsiPhi removed gap before (T0547)G64 # TweakPsiSubtree removed gap before (T0547)A165 # TweakPhi removed gap before (T0547)I550 # TweakPsiPhi removed gap before (T0547)L186 # TweakPhi removed gap before (T0547)H500 # TweakPhi removed gap before (T0547)R323 # TweakPsiSubtree removed gap before (T0547)F66 # TweakPhi removed gap before (T0547)A189 # TweakPsiSubtree removed gap before (T0547)I551 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPsiPhi removed gap before (T0547)K71 # TweakPsiSubtree removed gap before (T0547)L118 # Can't patch backbone between (T0547)E505 and (T0547)K506 because distance= 3.706 not near ideal 3.804 # generation 97: best score out of 40: T0547.try1-opt2 208.29338 cost/residue, 845 clashes 0.13386 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 133 74 / 371 = 0.19946 0.00420 ## JiggleSubtree 2 44 28 / 370 = 0.07568 0.00594 ## JiggleSegment 3 46 32 / 391 = 0.08184 0.00557 ## OptSubtree 0 0 0 / 86 = 0.00000 0.00000 ## OptSegment 0 1 1 / 202 = 0.00495 0.00173 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 85 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 71 = 0.00000 0.00000 ## TweakPhiSubtree 19 237 140 / 554 = 0.25271 0.00659 ## TweakPhiSegment 33 349 218 / 700 = 0.31143 0.00771 ## TweakPsiSubtree 1 229 168 / 623 = 0.26966 0.00691 ## TweakPsiSegment 1 308 204 / 724 = 0.28177 0.00851 ## TweakPsiPhiSubtree 57 233 140 / 475 = 0.29474 0.00549 ## TweakPsiPhiSegment 45 184 100 / 381 = 0.26247 0.00430 ## TweakHbondSubtree 9 166 112 / 514 = 0.21790 0.00578 ## TweakHbondSegment 6 182 97 / 458 = 0.21179 0.00547 ## TweakMultimer 114 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 9 74 49 / 153 = 0.32026 0.00111 ## FixOmega 1 0 0 / 72 = 0.00000 0.00000 ## Backrub 79 144 66 / 291 = 0.22680 0.00244 ## BigBackrub 54 48 25 / 194 = 0.12887 0.00220 ## OneRotamer 0 205 95 / 808 = 0.11757 0.00611 ## ClashingRotamer 1 3 1 / 143 = 0.00699 0.00091 ## ClusteredRotamer 14 4 2 / 129 = 0.01550 0.00089 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 176 = 0.00568 0.00015 ## CloseGap 0 19 6 / 234 = 0.02564 0.00698 ## HealGap 0 9 4 / 208 = 0.01923 0.00097 ## MoveGap 0 0 0 / 73 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 166 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 82 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 168 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 74 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 393 = 0.00000 0.00000 ## CrossOver 0 0 0 / 75 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 11 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 80 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)T531 # TweakPhi removed gap before (T0547)M149 # TweakPsiSubtree removed gap before (T0547)S236 # TweakPhi removed gap before (T0547)V397 # TweakPhi removed gap before (T0547)N253 # TweakPsiPhi removed gap before (T0547)Y25 # TweakPsiSubtree removed gap before (T0547)D380 # TweakPsiSubtree removed gap before (T0547)N123 # TweakPhi removed gap before (T0547)D312 # TweakPhi removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)K367 # TweakPhi removed gap before (T0547)G64 # TweakPhi removed gap before (T0547)R185 # TweakPhi removed gap before (T0547)D383 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPhi removed gap before (T0547)K304 # TweakPsiPhi removed gap before (T0547)E552 # TweakPsiSubtree removed gap before (T0547)E220 # TweakPhi removed gap before (T0547)A165 # TweakPsiSubtree removed gap before (T0547)N328 # TweakPhi removed gap before (T0547)E457 # TweakPsiSubtree removed gap before (T0547)L163 # TweakPhi removed gap before (T0547)I302 # TweakPsiPhi removed gap before (T0547)S321 # TweakPsiPhi removed gap before (T0547)I254 # TweakPsiSubtree removed gap before (T0547)K543 # TweakPhi removed gap before (T0547)D136 # TweakPsiSubtree removed gap before (T0547)G92 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)A121 # TweakPhi removed gap before (T0547)Y519 # TweakPhi removed gap before (T0547)H233 # TweakPhi removed gap before (T0547)Q433 # TweakPsiPhi removed gap before (T0547)V442 # TweakPsiPhi removed gap before (T0547)W194 # TweakPhi removed gap before (T0547)Y279 # TweakPhi removed gap before (T0547)S321 # generation 98: best score out of 40: T0547.try1-opt2 208.23848 cost/residue, 845 clashes 0.13355 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 135 74 / 377 = 0.19629 0.00413 ## JiggleSubtree 2 44 28 / 373 = 0.07507 0.00589 ## JiggleSegment 3 47 33 / 395 = 0.08354 0.00555 ## OptSubtree 0 0 0 / 86 = 0.00000 0.00000 ## OptSegment 0 1 1 / 202 = 0.00495 0.00173 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 85 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 71 = 0.00000 0.00000 ## TweakPhiSubtree 19 240 142 / 564 = 0.25177 0.00650 ## TweakPhiSegment 35 357 225 / 713 = 0.31557 0.00772 ## TweakPsiSubtree 1 230 169 / 626 = 0.26997 0.00692 ## TweakPsiSegment 1 312 206 / 731 = 0.28181 0.00861 ## TweakPsiPhiSubtree 59 234 140 / 477 = 0.29350 0.00547 ## TweakPsiPhiSegment 46 187 103 / 385 = 0.26753 0.00445 ## TweakHbondSubtree 9 169 115 / 523 = 0.21989 0.00580 ## TweakHbondSegment 6 183 98 / 464 = 0.21121 0.00540 ## TweakMultimer 114 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 9 76 50 / 156 = 0.32051 0.00110 ## FixOmega 1 0 0 / 72 = 0.00000 0.00000 ## Backrub 79 146 67 / 296 = 0.22635 0.00240 ## BigBackrub 54 48 25 / 195 = 0.12821 0.00218 ## OneRotamer 0 205 95 / 818 = 0.11614 0.00604 ## ClashingRotamer 1 3 1 / 145 = 0.00690 0.00090 ## ClusteredRotamer 14 4 2 / 129 = 0.01550 0.00089 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 177 = 0.00565 0.00015 ## CloseGap 0 19 6 / 236 = 0.02542 0.00692 ## HealGap 0 9 4 / 209 = 0.01914 0.00096 ## MoveGap 0 0 0 / 74 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 168 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 82 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 169 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 74 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 397 = 0.00000 0.00000 ## CrossOver 0 0 0 / 75 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 11 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 80 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 88 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L523 # TweakPsiSubtree removed gap before (T0547)I241 # TweakPsiPhi removed gap before (T0547)L224 # TweakPhi removed gap before (T0547)Y491 # TweakPsiSubtree removed gap before (T0547)H53 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)N96 # TweakPhi removed gap before (T0547)E250 # TweakPsiSubtree removed gap before (T0547)G64 # TweakPsiSubtree removed gap before (T0547)Y440 # TweakPhi removed gap before (T0547)I538 # TweakPsiPhi removed gap before (T0547)L511 # TweakPsiPhi removed gap before (T0547)Y363 # TweakPsiSubtree removed gap before (T0547)I306 # TweakPsiSubtree removed gap before (T0547)H187 # TweakPhi removed gap before (T0547)A536 # TweakPsiPhi removed gap before (T0547)F73 # TweakPhi removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)K423 # TweakPsiSubtree removed gap before (T0547)S581 # TweakPsiPhi removed gap before (T0547)L391 # TweakPhi removed gap before (T0547)D422 # TweakPhi removed gap before (T0547)H151 # TweakPhi removed gap before (T0547)E213 # TweakPsiPhi removed gap before (T0547)I306 # TweakPsiSubtree removed gap before (T0547)L375 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L292 # TweakPhi removed gap before (T0547)I238 # TweakPsiPhi removed gap before (T0547)I254 # TweakPhi removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)Q56 # TweakPsiPhi removed gap before (T0547)K582 # generation 99: best score out of 40: T0547.try1-opt2 208.21884 cost/residue, 845 clashes 0.13355 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 136 75 / 385 = 0.19481 0.00411 ## JiggleSubtree 2 44 28 / 374 = 0.07487 0.00587 ## JiggleSegment 3 47 33 / 400 = 0.08250 0.00548 ## OptSubtree 0 0 0 / 87 = 0.00000 0.00000 ## OptSegment 0 1 1 / 202 = 0.00495 0.00173 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 86 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 71 = 0.00000 0.00000 ## TweakPhiSubtree 19 242 144 / 568 = 0.25352 0.00649 ## TweakPhiSegment 35 362 226 / 720 = 0.31389 0.00772 ## TweakPsiSubtree 1 232 171 / 631 = 0.27100 0.00690 ## TweakPsiSegment 2 313 207 / 737 = 0.28087 0.00854 ## TweakPsiPhiSubtree 61 238 142 / 484 = 0.29339 0.00545 ## TweakPsiPhiSegment 47 188 105 / 391 = 0.26854 0.00441 ## TweakHbondSubtree 9 171 116 / 529 = 0.21928 0.00575 ## TweakHbondSegment 6 186 101 / 476 = 0.21218 0.00556 ## TweakMultimer 115 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 9 77 51 / 158 = 0.32278 0.00112 ## FixOmega 1 0 0 / 72 = 0.00000 0.00000 ## Backrub 80 149 68 / 301 = 0.22591 0.00238 ## BigBackrub 55 48 25 / 195 = 0.12821 0.00218 ## OneRotamer 0 207 96 / 829 = 0.11580 0.00605 ## ClashingRotamer 1 3 1 / 147 = 0.00680 0.00089 ## ClusteredRotamer 14 4 2 / 129 = 0.01550 0.00089 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 177 = 0.00565 0.00015 ## CloseGap 0 19 6 / 238 = 0.02521 0.00686 ## HealGap 0 9 4 / 209 = 0.01914 0.00096 ## MoveGap 0 0 0 / 74 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 170 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 82 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 169 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 75 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 399 = 0.00000 0.00000 ## CrossOver 0 0 0 / 77 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 80 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 89 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)G101 # TweakPhi removed gap before (T0547)D422 # TweakPsiPhi removed gap before (T0547)G181 # TweakPhi removed gap before (T0547)S287 # TweakPsiSubtree removed gap before (T0547)M450 # TweakPhi removed gap before (T0547)I306 # TweakPsiSubtree removed gap before (T0547)F530 # TweakPhi removed gap before (T0547)F14 # TweakPsiPhi removed gap before (T0547)Y83 # TweakPsiPhi removed gap before (T0547)G150 # TweakPsiPhi removed gap before (T0547)K102 # TweakPsiSubtree removed gap before (T0547)E576 # TweakPsiSubtree removed gap before (T0547)F530 # TweakPsiPhi removed gap before (T0547)S321 # TweakPhi removed gap before (T0547)L358 # TweakPsiSubtree removed gap before (T0547)A121 # TweakPsiPhi removed gap before (T0547)D393 # TweakPsiPhi removed gap before (T0547)L378 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Y363 # TweakPsiSubtree removed gap before (T0547)Y295 # TweakPsiPhi removed gap before (T0547)E213 # TweakPsiSubtree removed gap before (T0547)Y122 # TweakPsiPhi removed gap before (T0547)E162 # TweakPhi removed gap before (T0547)F510 # TweakPsiSubtree removed gap before (T0547)G159 # TweakPsiSubtree removed gap before (T0547)L38 # TweakPsiPhi removed gap before (T0547)K68 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I609 # TweakPsiPhi removed gap before (T0547)S477 # TweakPhi removed gap before (T0547)I157 # TweakPsiSubtree removed gap before (T0547)L224 # TweakPhi removed gap before (T0547)G42 # TweakPhi removed gap before (T0547)L275 # TweakPsiSubtree removed gap before (T0547)S372 # BackrubGuts cancelled---proline or break # generation 100: best score out of 40: T0547.try1-opt2 208.13728 cost/residue, 845 clashes 0.13356 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 139 76 / 390 = 0.19487 0.00410 ## JiggleSubtree 2 44 28 / 374 = 0.07487 0.00587 ## JiggleSegment 3 47 33 / 400 = 0.08250 0.00548 ## OptSubtree 0 0 0 / 88 = 0.00000 0.00000 ## OptSegment 0 1 1 / 202 = 0.00495 0.00173 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 86 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 72 = 0.00000 0.00000 ## TweakPhiSubtree 19 243 144 / 572 = 0.25175 0.00644 ## TweakPhiSegment 35 366 227 / 726 = 0.31267 0.00766 ## TweakPsiSubtree 1 234 172 / 635 = 0.27087 0.00687 ## TweakPsiSegment 2 318 210 / 750 = 0.28000 0.00854 ## TweakPsiPhiSubtree 62 242 144 / 493 = 0.29209 0.00556 ## TweakPsiPhiSegment 48 189 105 / 395 = 0.26582 0.00437 ## TweakHbondSubtree 9 174 120 / 541 = 0.22181 0.00578 ## TweakHbondSegment 6 187 102 / 482 = 0.21162 0.00569 ## TweakMultimer 118 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 9 79 52 / 160 = 0.32500 0.00113 ## FixOmega 2 0 0 / 72 = 0.00000 0.00000 ## Backrub 83 149 69 / 304 = 0.22697 0.00236 ## BigBackrub 55 48 25 / 197 = 0.12690 0.00216 ## OneRotamer 0 207 96 / 845 = 0.11361 0.00593 ## ClashingRotamer 1 3 1 / 149 = 0.00671 0.00088 ## ClusteredRotamer 14 4 2 / 129 = 0.01550 0.00089 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 177 = 0.00565 0.00015 ## CloseGap 0 19 6 / 238 = 0.02521 0.00686 ## HealGap 0 10 5 / 210 = 0.02381 0.00111 ## MoveGap 0 0 0 / 74 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 173 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 83 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 169 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 77 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 401 = 0.00000 0.00000 ## CrossOver 0 0 0 / 78 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 80 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 89 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)Y519 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPsiPhi removed gap before (T0547)A326 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)V331 # TweakPsiSubtree removed gap before (T0547)K86 # TweakPsiPhi removed gap before (T0547)I166 # TweakPhi removed gap before (T0547)K71 # TweakPsiSubtree removed gap before (T0547)H568 # TweakPhi removed gap before (T0547)G181 # TweakPhi removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)G77 # TweakPsiSubtree removed gap before (T0547)H532 # TweakPsiSubtree removed gap before (T0547)A30 # TweakPsiPhi removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)Q554 # TweakPsiPhi removed gap before (T0547)E213 # TweakPhi removed gap before (T0547)T473 # TweakPsiSubtree removed gap before (T0547)K264 # TweakPhi removed gap before (T0547)I269 # TweakPhi removed gap before (T0547)K352 # TweakPhi removed gap before (T0547)V215 # TweakPsiSubtree removed gap before (T0547)S188 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPsiSubtree removed gap before (T0547)E320 # TweakPsiPhi removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)Q554 # TweakPsiPhi removed gap before (T0547)Y25 # TweakPsiPhi removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)L217 # TweakPsiSubtree removed gap before (T0547)V584 # generation 101: best score out of 40: T0547.try1-opt2 208.11639 cost/residue, 840 clashes 0.13375 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 139 76 / 392 = 0.19388 0.00408 ## JiggleSubtree 2 44 28 / 374 = 0.07487 0.00587 ## JiggleSegment 3 48 34 / 405 = 0.08395 0.00543 ## OptSubtree 0 0 0 / 88 = 0.00000 0.00000 ## OptSegment 0 1 1 / 204 = 0.00490 0.00172 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 86 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 72 = 0.00000 0.00000 ## TweakPhiSubtree 19 246 145 / 577 = 0.25130 0.00640 ## TweakPhiSegment 35 368 228 / 732 = 0.31148 0.00760 ## TweakPsiSubtree 1 234 174 / 642 = 0.27103 0.00680 ## TweakPsiSegment 2 322 213 / 759 = 0.28063 0.00858 ## TweakPsiPhiSubtree 62 245 146 / 498 = 0.29317 0.00559 ## TweakPsiPhiSegment 49 191 107 / 398 = 0.26884 0.00438 ## TweakHbondSubtree 9 175 120 / 546 = 0.21978 0.00573 ## TweakHbondSegment 6 191 106 / 497 = 0.21328 0.00561 ## TweakMultimer 121 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 10 81 53 / 163 = 0.32515 0.00121 ## FixOmega 2 0 0 / 73 = 0.00000 0.00000 ## Backrub 83 151 69 / 310 = 0.22258 0.00231 ## BigBackrub 55 48 25 / 199 = 0.12563 0.00214 ## OneRotamer 0 209 97 / 857 = 0.11319 0.00587 ## ClashingRotamer 1 3 1 / 150 = 0.00667 0.00087 ## ClusteredRotamer 15 4 2 / 130 = 0.01538 0.00089 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 177 = 0.00565 0.00015 ## CloseGap 0 19 6 / 240 = 0.02500 0.00680 ## HealGap 0 10 5 / 214 = 0.02336 0.00109 ## MoveGap 0 0 0 / 75 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 175 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 83 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 169 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 77 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 402 = 0.00000 0.00000 ## CrossOver 0 0 0 / 78 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 80 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 89 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L362 # TweakPsiPhi removed gap before (T0547)H329 # TweakPsiSubtree removed gap before (T0547)D364 # TweakPsiPhi removed gap before (T0547)Q342 # TweakPsiSubtree removed gap before (T0547)I8 # TweakPsiPhi removed gap before (T0547)I556 # TweakPsiPhi removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)P356 # TweakPsiSubtree removed gap before (T0547)I359 # TweakPsiSubtree removed gap before (T0547)F510 # TweakPsiSubtree removed gap before (T0547)F460 # TweakPhi removed gap before (T0547)S579 # TweakPsiSubtree removed gap before (T0547)Q437 # TweakPhi removed gap before (T0547)L258 # TweakPhi removed gap before (T0547)K286 # TweakPsiPhi removed gap before (T0547)S188 # TweakPsiSubtree removed gap before (T0547)L337 # TweakPhi removed gap before (T0547)F599 # TweakPhi removed gap before (T0547)L418 # TweakPsiSubtree removed gap before (T0547)N13 # TweakPsiSubtree removed gap before (T0547)L38 # TweakPsiPhi removed gap before (T0547)E507 # TweakPhi removed gap before (T0547)I540 # TweakPsiPhi removed gap before (T0547)Y255 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPhi removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)D312 # TweakPsiPhi removed gap before (T0547)V35 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)D401 # TweakPsiSubtree removed gap before (T0547)Y440 # TweakPhi removed gap before (T0547)H329 # TweakPhi removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)R39 # TweakPsiSubtree removed gap before (T0547)G19 # TweakPhi removed gap before (T0547)L108 # TweakPsiSubtree removed gap before (T0547)L258 # TweakPhi removed gap before (T0547)D360 # TweakPsiPhi removed gap before (T0547)F514 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)N80 # TweakPsiSubtree removed gap before (T0547)S403 # TweakPsiSubtree removed gap before (T0547)S236 # TweakPsiSubtree removed gap before (T0547)H53 # TweakPhi removed gap before (T0547)L182 # TweakPsiSubtree removed gap before (T0547)D566 # generation 102: best score out of 40: T0547.try1-opt2 208.04515 cost/residue, 842 clashes 0.13356 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 140 77 / 396 = 0.19444 0.00404 ## JiggleSubtree 2 44 28 / 374 = 0.07487 0.00587 ## JiggleSegment 3 48 34 / 409 = 0.08313 0.00538 ## OptSubtree 0 0 0 / 89 = 0.00000 0.00000 ## OptSegment 0 1 1 / 206 = 0.00485 0.00170 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 87 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 72 = 0.00000 0.00000 ## TweakPhiSubtree 19 250 149 / 584 = 0.25514 0.00658 ## TweakPhiSegment 35 369 228 / 738 = 0.30894 0.00753 ## TweakPsiSubtree 1 236 175 / 651 = 0.26882 0.00679 ## TweakPsiSegment 2 327 216 / 774 = 0.27907 0.00864 ## TweakPsiPhiSubtree 63 247 148 / 504 = 0.29365 0.00554 ## TweakPsiPhiSegment 50 193 109 / 402 = 0.27114 0.00444 ## TweakHbondSubtree 9 178 122 / 554 = 0.22022 0.00567 ## TweakHbondSegment 6 194 109 / 507 = 0.21499 0.00561 ## TweakMultimer 121 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 11 81 53 / 164 = 0.32317 0.00120 ## FixOmega 2 0 0 / 73 = 0.00000 0.00000 ## Backrub 83 152 70 / 312 = 0.22436 0.00230 ## BigBackrub 55 48 25 / 201 = 0.12438 0.00212 ## OneRotamer 0 209 97 / 866 = 0.11201 0.00580 ## ClashingRotamer 1 3 1 / 151 = 0.00662 0.00087 ## ClusteredRotamer 15 4 2 / 130 = 0.01538 0.00089 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 177 = 0.00565 0.00015 ## CloseGap 0 19 6 / 240 = 0.02500 0.00680 ## HealGap 0 10 5 / 216 = 0.02315 0.00108 ## MoveGap 0 0 0 / 77 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 176 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 83 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 169 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 78 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 403 = 0.00000 0.00000 ## CrossOver 0 0 0 / 78 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 81 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 89 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)I145 # TweakPhi removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)L275 # TweakPsiSubtree removed gap before (T0547)A405 # TweakPsiSubtree removed gap before (T0547)I302 # TweakPsiSubtree removed gap before (T0547)K36 # TweakPsiSubtree removed gap before (T0547)M525 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)H384 # TweakPhi removed gap before (T0547)A214 # TweakPsiSubtree removed gap before (T0547)G78 # TweakPhi removed gap before (T0547)N124 # TweakPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)F73 # TweakPhi removed gap before (T0547)N65 # TweakPsiPhi removed gap before (T0547)F51 # TweakPhi removed gap before (T0547)N253 # TweakPsiSubtree removed gap before (T0547)N284 # TweakPhi removed gap before (T0547)I167 # TweakPhi removed gap before (T0547)I193 # TweakPhi removed gap before (T0547)G42 # TweakPsiSubtree removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)N96 # TweakPhi removed gap before (T0547)L606 # TweakPhi removed gap before (T0547)E115 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A569 # TweakPhi removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)L411 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPsiSubtree removed gap before (T0547)V547 # TweakPsiPhi removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)F599 # TweakPhi removed gap before (T0547)V442 # TweakPhi removed gap before (T0547)Q424 # TweakPsiSubtree removed gap before (T0547)K357 # TweakPsiPhi removed gap before (T0547)L217 # TweakPsiPhi removed gap before (T0547)D452 # TweakPsiPhi removed gap before (T0547)M261 # TweakPsiPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)E561 # TweakPhi removed gap before (T0547)N575 # TweakPhi removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)M2 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPsiPhi removed gap before (T0547)E257 # TweakPsiSubtree removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)A119 # generation 103: best score out of 40: T0547.try1-opt2 207.98061 cost/residue, 838 clashes 0.13328 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 140 77 / 397 = 0.19395 0.00403 ## JiggleSubtree 2 44 28 / 374 = 0.07487 0.00587 ## JiggleSegment 3 48 34 / 412 = 0.08252 0.00534 ## OptSubtree 0 0 0 / 89 = 0.00000 0.00000 ## OptSegment 0 1 1 / 207 = 0.00483 0.00169 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 87 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 73 = 0.00000 0.00000 ## TweakPhiSubtree 19 254 152 / 595 = 0.25546 0.00649 ## TweakPhiSegment 35 373 230 / 747 = 0.30790 0.00751 ## TweakPsiSubtree 1 239 177 / 660 = 0.26818 0.00680 ## TweakPsiSegment 2 331 219 / 786 = 0.27863 0.00867 ## TweakPsiPhiSubtree 63 252 151 / 510 = 0.29608 0.00553 ## TweakPsiPhiSegment 52 194 110 / 405 = 0.27160 0.00445 ## TweakHbondSubtree 9 178 122 / 559 = 0.21825 0.00562 ## TweakHbondSegment 6 199 112 / 519 = 0.21580 0.00561 ## TweakMultimer 124 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 12 82 54 / 167 = 0.32335 0.00120 ## FixOmega 2 0 0 / 75 = 0.00000 0.00000 ## Backrub 85 153 70 / 316 = 0.22152 0.00227 ## BigBackrub 55 48 25 / 202 = 0.12376 0.00211 ## OneRotamer 0 210 97 / 875 = 0.11086 0.00574 ## ClashingRotamer 1 3 1 / 151 = 0.00662 0.00087 ## ClusteredRotamer 15 4 2 / 130 = 0.01538 0.00089 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 177 = 0.00565 0.00015 ## CloseGap 0 19 6 / 240 = 0.02500 0.00680 ## HealGap 0 10 5 / 218 = 0.02294 0.00107 ## MoveGap 0 0 0 / 78 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 176 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 84 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 169 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 79 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 403 = 0.00000 0.00000 ## CrossOver 0 0 0 / 79 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 82 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 90 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)V611 # TweakPhi removed gap before (T0547)F392 # TweakPhi removed gap before (T0547)E294 # TweakPhi removed gap before (T0547)A307 # TweakPsiPhi removed gap before (T0547)K260 # TweakPsiPhi removed gap before (T0547)I432 # TweakPhi removed gap before (T0547)L557 # TweakPsiSubtree removed gap before (T0547)N443 # TweakPhi removed gap before (T0547)I212 # TweakPsiSubtree removed gap before (T0547)I153 # TweakPsiSubtree removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)I412 # TweakPsiPhi removed gap before (T0547)L375 # TweakPsiPhi removed gap before (T0547)F144 # TweakPhi removed gap before (T0547)F318 # TweakPsiPhi removed gap before (T0547)L497 # TweakPsiSubtree removed gap before (T0547)Y122 # TweakPsiSubtree removed gap before (T0547)P356 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)E346 # TweakPhi removed gap before (T0547)D566 # TweakPsiSubtree removed gap before (T0547)D103 # TweakPsiSubtree removed gap before (T0547)L48 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPsiPhi removed gap before (T0547)I302 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)K219 # TweakPsiPhi removed gap before (T0547)Q448 # TweakPsiSubtree removed gap before (T0547)Q448 # TweakPsiSubtree removed gap before (T0547)P84 # TweakPhi removed gap before (T0547)T209 # TweakPhi removed gap before (T0547)L186 # TweakPsiSubtree removed gap before (T0547)L418 # TweakPhi removed gap before (T0547)L560 # TweakPsiPhi removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)I319 # TweakPsiPhi removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)D469 # TweakPsiPhi removed gap before (T0547)R323 # TweakPsiSubtree removed gap before (T0547)E457 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPsiPhi removed gap before (T0547)N13 # TweakPhi removed gap before (T0547)E115 # TweakPsiPhi removed gap before (T0547)L163 # TweakPsiPhi removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)A476 # TweakPsiSubtree removed gap before (T0547)A146 # generation 104: best score out of 40: T0547.try1-opt2 207.86116 cost/residue, 840 clashes 0.13279 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 141 79 / 403 = 0.19603 0.00398 ## JiggleSubtree 2 44 28 / 376 = 0.07447 0.00584 ## JiggleSegment 3 48 34 / 415 = 0.08193 0.00530 ## OptSubtree 0 0 0 / 89 = 0.00000 0.00000 ## OptSegment 0 1 1 / 210 = 0.00476 0.00167 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 87 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 73 = 0.00000 0.00000 ## TweakPhiSubtree 21 259 157 / 605 = 0.25950 0.00655 ## TweakPhiSegment 35 375 230 / 751 = 0.30626 0.00747 ## TweakPsiSubtree 1 241 179 / 668 = 0.26796 0.00691 ## TweakPsiSegment 2 335 221 / 797 = 0.27729 0.00858 ## TweakPsiPhiSubtree 63 258 155 / 523 = 0.29637 0.00545 ## TweakPsiPhiSegment 53 197 112 / 410 = 0.27317 0.00446 ## TweakHbondSubtree 9 179 123 / 567 = 0.21693 0.00564 ## TweakHbondSegment 7 204 115 / 527 = 0.21822 0.00559 ## TweakMultimer 124 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 83 55 / 172 = 0.31977 0.00121 ## FixOmega 2 0 0 / 75 = 0.00000 0.00000 ## Backrub 85 154 70 / 319 = 0.21944 0.00225 ## BigBackrub 55 48 25 / 203 = 0.12315 0.00210 ## OneRotamer 0 210 97 / 878 = 0.11048 0.00573 ## ClashingRotamer 1 3 1 / 152 = 0.00658 0.00086 ## ClusteredRotamer 15 4 2 / 130 = 0.01538 0.00089 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 178 = 0.00562 0.00015 ## CloseGap 0 19 6 / 240 = 0.02500 0.00680 ## HealGap 0 10 5 / 219 = 0.02283 0.00106 ## MoveGap 0 0 0 / 78 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 177 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 84 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 170 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 79 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 404 = 0.00000 0.00000 ## CrossOver 0 0 0 / 79 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 82 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 91 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)E346 # TweakPsiPhi removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)A119 # TweakPsiSubtree removed gap before (T0547)E406 # TweakPsiSubtree removed gap before (T0547)L394 # TweakPhi removed gap before (T0547)S492 # TweakPhi removed gap before (T0547)I302 # TweakPsiSubtree removed gap before (T0547)E285 # TweakPsiSubtree removed gap before (T0547)Y255 # TweakPsiPhi removed gap before (T0547)D558 # TweakPsiPhi removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)I212 # TweakPsiPhi removed gap before (T0547)Q56 # TweakPsiPhi removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)K245 # TweakPhi removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)P29 # TweakPsiPhi removed gap before (T0547)L557 # TweakPhi removed gap before (T0547)I129 # TweakPsiSubtree removed gap before (T0547)D422 # TweakPsiPhi removed gap before (T0547)L394 # TweakPsiSubtree removed gap before (T0547)F530 # TweakPsiPhi removed gap before (T0547)F599 # TweakPhi removed gap before (T0547)A276 # TweakPhi removed gap before (T0547)I412 # TweakPsiSubtree removed gap before (T0547)G205 # TweakPsiSubtree removed gap before (T0547)P52 # TweakPsiPhi removed gap before (T0547)L351 # TweakPsiSubtree removed gap before (T0547)S539 # TweakPhi removed gap before (T0547)N289 # TweakPsiSubtree removed gap before (T0547)A214 # TweakPsiSubtree removed gap before (T0547)N132 # TweakPhi removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPhi removed gap before (T0547)T559 # TweakPsiPhi removed gap before (T0547)E125 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPsiSubtree removed gap before (T0547)V397 # TweakPsiSubtree removed gap before (T0547)S381 # TweakPsiSubtree removed gap before (T0547)F510 # TweakPsiPhi removed gap before (T0547)A518 # TweakPsiSubtree removed gap before (T0547)F204 # TweakPsiPhi removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)R402 # TweakPsiSubtree removed gap before (T0547)L303 # generation 105: best score out of 40: T0547.try1-opt2 207.81036 cost/residue, 838 clashes 0.13071 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 144 81 / 407 = 0.19902 0.00402 ## JiggleSubtree 2 44 28 / 376 = 0.07447 0.00584 ## JiggleSegment 3 48 34 / 420 = 0.08095 0.00524 ## OptSubtree 0 0 0 / 89 = 0.00000 0.00000 ## OptSegment 0 1 1 / 210 = 0.00476 0.00167 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 87 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 73 = 0.00000 0.00000 ## TweakPhiSubtree 22 260 159 / 612 = 0.25980 0.00651 ## TweakPhiSegment 35 377 230 / 756 = 0.30423 0.00742 ## TweakPsiSubtree 1 245 183 / 684 = 0.26754 0.00695 ## TweakPsiSegment 2 337 225 / 806 = 0.27916 0.00851 ## TweakPsiPhiSubtree 63 261 157 / 530 = 0.29623 0.00544 ## TweakPsiPhiSegment 53 201 112 / 417 = 0.26859 0.00438 ## TweakHbondSubtree 9 181 123 / 574 = 0.21429 0.00557 ## TweakHbondSegment 7 205 116 / 533 = 0.21764 0.00553 ## TweakMultimer 125 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 86 55 / 176 = 0.31250 0.00118 ## FixOmega 2 0 0 / 75 = 0.00000 0.00000 ## Backrub 85 155 71 / 322 = 0.22050 0.00225 ## BigBackrub 55 48 25 / 204 = 0.12255 0.00209 ## OneRotamer 0 213 97 / 883 = 0.10985 0.00569 ## ClashingRotamer 1 3 1 / 153 = 0.00654 0.00085 ## ClusteredRotamer 15 4 2 / 130 = 0.01538 0.00089 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 178 = 0.00562 0.00015 ## CloseGap 0 19 6 / 241 = 0.02490 0.00677 ## HealGap 0 10 5 / 222 = 0.02252 0.00105 ## MoveGap 0 0 0 / 79 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 179 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 85 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 170 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 80 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 407 = 0.00000 0.00000 ## CrossOver 0 0 0 / 79 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 83 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 91 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)K286 # TweakPsiPhi removed gap before (T0547)N297 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPhi removed gap before (T0547)D434 # TweakPsiSubtree removed gap before (T0547)A276 # TweakPhi removed gap before (T0547)I16 # TweakPsiSubtree removed gap before (T0547)L515 # TweakPsiSubtree removed gap before (T0547)D486 # TweakPsiPhi removed gap before (T0547)L497 # TweakPhi removed gap before (T0547)A569 # TweakPsiSubtree removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)H233 # TweakPhi removed gap before (T0547)W479 # TweakPsiSubtree removed gap before (T0547)V547 # TweakPsiSubtree removed gap before (T0547)H242 # TweakPsiPhi removed gap before (T0547)N603 # TweakPsiPhi removed gap before (T0547)A518 # TweakPhi removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)H187 # TweakPsiPhi removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)F301 # TweakPsiPhi removed gap before (T0547)M149 # TweakPsiSubtree removed gap before (T0547)L48 # TweakPsiSubtree removed gap before (T0547)H527 # TweakPsiPhi removed gap before (T0547)L244 # TweakPsiPhi removed gap before (T0547)L596 # TweakPhi removed gap before (T0547)K219 # TweakPsiPhi removed gap before (T0547)L275 # TweakPsiPhi removed gap before (T0547)H151 # TweakPsiPhi removed gap before (T0547)E220 # TweakPsiSubtree removed gap before (T0547)Q400 # TweakPsiPhi removed gap before (T0547)K493 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPsiPhi removed gap before (T0547)N284 # TweakPsiPhi removed gap before (T0547)L97 # TweakPhi removed gap before (T0547)I412 # TweakPhi removed gap before (T0547)E406 # TweakPhi removed gap before (T0547)D298 # TweakPhi removed gap before (T0547)L515 # TweakPsiPhi removed gap before (T0547)E72 # TweakPsiPhi removed gap before (T0547)I573 # TweakPsiPhi removed gap before (T0547)N96 # generation 106: best score out of 40: T0547.try1-opt2 207.77550 cost/residue, 839 clashes 0.13240 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 145 82 / 410 = 0.20000 0.00423 ## JiggleSubtree 2 44 28 / 377 = 0.07427 0.00583 ## JiggleSegment 3 48 34 / 420 = 0.08095 0.00524 ## OptSubtree 0 0 0 / 90 = 0.00000 0.00000 ## OptSegment 0 1 1 / 211 = 0.00474 0.00166 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 89 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 73 = 0.00000 0.00000 ## TweakPhiSubtree 24 262 160 / 617 = 0.25932 0.00654 ## TweakPhiSegment 35 379 231 / 762 = 0.30315 0.00738 ## TweakPsiSubtree 1 248 185 / 695 = 0.26619 0.00694 ## TweakPsiSegment 2 338 225 / 811 = 0.27744 0.00846 ## TweakPsiPhiSubtree 63 267 158 / 540 = 0.29259 0.00534 ## TweakPsiPhiSegment 54 206 115 / 427 = 0.26932 0.00437 ## TweakHbondSubtree 9 183 124 / 580 = 0.21379 0.00552 ## TweakHbondSegment 7 208 117 / 540 = 0.21667 0.00558 ## TweakMultimer 128 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 86 55 / 179 = 0.30726 0.00116 ## FixOmega 2 0 0 / 75 = 0.00000 0.00000 ## Backrub 85 156 71 / 324 = 0.21914 0.00223 ## BigBackrub 55 50 26 / 207 = 0.12560 0.00222 ## OneRotamer 0 215 97 / 893 = 0.10862 0.00563 ## ClashingRotamer 1 3 1 / 154 = 0.00649 0.00085 ## ClusteredRotamer 15 4 2 / 130 = 0.01538 0.00089 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 179 = 0.00559 0.00015 ## CloseGap 0 19 6 / 242 = 0.02479 0.00675 ## HealGap 0 10 5 / 225 = 0.02222 0.00103 ## MoveGap 0 0 0 / 79 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 181 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 85 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 172 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 81 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 410 = 0.00000 0.00000 ## CrossOver 0 0 0 / 79 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 83 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 91 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)D364 # TweakPsiSubtree removed gap before (T0547)G421 # TweakPsiPhi removed gap before (T0547)I359 # TweakPsiSubtree removed gap before (T0547)G111 # TweakPhi removed gap before (T0547)L430 # TweakPhi removed gap before (T0547)Q588 # TweakPsiPhi removed gap before (T0547)R402 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPsiPhi removed gap before (T0547)L217 # TweakPhi removed gap before (T0547)N528 # TweakPhi removed gap before (T0547)D422 # TweakPhi removed gap before (T0547)Q58 # TweakPsiPhi removed gap before (T0547)K414 # TweakPhi removed gap before (T0547)G192 # TweakPsiSubtree removed gap before (T0547)M525 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N253 # TweakPsiSubtree removed gap before (T0547)K506 # TweakPsiSubtree removed gap before (T0547)Q237 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPsiSubtree removed gap before (T0547)E505 # TweakPsiSubtree removed gap before (T0547)L337 # TweakPsiSubtree removed gap before (T0547)Y396 # TweakPsiSubtree removed gap before (T0547)V131 # TweakPhi removed gap before (T0547)G78 # TweakPhi removed gap before (T0547)N141 # TweakPsiPhi removed gap before (T0547)A427 # TweakPsiSubtree removed gap before (T0547)I59 # TweakPsiSubtree removed gap before (T0547)V611 # TweakPsiPhi removed gap before (T0547)E285 # TweakPsiPhi removed gap before (T0547)E552 # TweakPsiPhi removed gap before (T0547)A214 # TweakPhi removed gap before (T0547)I32 # TweakPhi removed gap before (T0547)N24 # TweakPsiPhi removed gap before (T0547)Y366 # TweakPhi removed gap before (T0547)V299 # TweakPhi removed gap before (T0547)E213 # TweakPsiSubtree removed gap before (T0547)T534 # TweakPhi removed gap before (T0547)D401 # TweakPhi removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)P84 # TweakPsiSubtree removed gap before (T0547)V516 # TweakPsiPhi removed gap before (T0547)Q281 # TweakPsiSubtree removed gap before (T0547)E314 # TweakPsiPhi removed gap before (T0547)D484 # TweakPsiSubtree removed gap before (T0547)G517 # TweakPsiSubtree removed gap before (T0547)P496 # TweakPsiSubtree removed gap before (T0547)R439 # TweakPsiSubtree removed gap before (T0547)I432 # TweakPsiPhi removed gap before (T0547)L441 # generation 107: best score out of 40: T0547.try1-opt2 207.67122 cost/residue, 836 clashes 0.13140 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 146 83 / 414 = 0.20048 0.00426 ## JiggleSubtree 2 44 28 / 378 = 0.07407 0.00581 ## JiggleSegment 3 48 34 / 423 = 0.08038 0.00520 ## OptSubtree 0 0 0 / 90 = 0.00000 0.00000 ## OptSegment 0 1 1 / 211 = 0.00474 0.00166 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 90 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 73 = 0.00000 0.00000 ## TweakPhiSubtree 24 266 162 / 625 = 0.25920 0.00648 ## TweakPhiSegment 36 382 233 / 770 = 0.30260 0.00732 ## TweakPsiSubtree 1 250 186 / 704 = 0.26420 0.00686 ## TweakPsiSegment 2 343 227 / 826 = 0.27482 0.00848 ## TweakPsiPhiSubtree 63 268 158 / 546 = 0.28938 0.00528 ## TweakPsiPhiSegment 54 210 118 / 434 = 0.27189 0.00445 ## TweakHbondSubtree 9 184 124 / 584 = 0.21233 0.00548 ## TweakHbondSegment 7 209 117 / 545 = 0.21468 0.00553 ## TweakMultimer 132 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 86 57 / 183 = 0.31148 0.00115 ## FixOmega 2 0 0 / 75 = 0.00000 0.00000 ## Backrub 87 157 72 / 326 = 0.22086 0.00222 ## BigBackrub 55 51 27 / 210 = 0.12857 0.00219 ## OneRotamer 0 218 98 / 902 = 0.10865 0.00557 ## ClashingRotamer 1 3 1 / 154 = 0.00649 0.00085 ## ClusteredRotamer 15 4 2 / 131 = 0.01527 0.00088 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 180 = 0.00556 0.00015 ## CloseGap 0 19 6 / 242 = 0.02479 0.00675 ## HealGap 0 11 5 / 229 = 0.02183 0.00101 ## MoveGap 0 0 0 / 80 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 183 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 86 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 172 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 81 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 410 = 0.00000 0.00000 ## CrossOver 0 0 0 / 79 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 84 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 91 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)L139 # TweakPhi removed gap before (T0547)E37 # TweakPhi removed gap before (T0547)L206 # TweakPsiPhi removed gap before (T0547)A296 # TweakPsiSubtree removed gap before (T0547)Y25 # TweakPsiSubtree removed gap before (T0547)G544 # TweakPhi removed gap before (T0547)N528 # TweakPsiPhi removed gap before (T0547)I241 # TweakPsiSubtree removed gap before (T0547)G421 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)D452 # TweakPsiSubtree removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)A307 # TweakPsiPhi removed gap before (T0547)R474 # TweakPhi removed gap before (T0547)K71 # TweakPsiSubtree removed gap before (T0547)L38 # TweakPsiPhi removed gap before (T0547)D466 # TweakPhi removed gap before (T0547)I180 # TweakPsiSubtree removed gap before (T0547)I212 # TweakPhi removed gap before (T0547)K589 # TweakPhi removed gap before (T0547)L441 # TweakPsiSubtree removed gap before (T0547)K135 # TweakPsiSubtree removed gap before (T0547)E225 # TweakPsiPhi removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)I317 # TweakPsiPhi removed gap before (T0547)Q237 # TweakPhi removed gap before (T0547)K357 # TweakPhi removed gap before (T0547)D312 # TweakPsiPhi removed gap before (T0547)I169 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A147 # TweakPsiPhi removed gap before (T0547)E26 # TweakPsiSubtree removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)S188 # TweakPsiPhi removed gap before (T0547)F134 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)M463 # TweakPsiPhi removed gap before (T0547)G198 # TweakPsiPhi removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)N603 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPsiPhi removed gap before (T0547)K17 # TweakPhi removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)P315 # TweakPhi removed gap before (T0547)G190 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPhi removed gap before (T0547)I59 # generation 108: best score out of 40: T0547.try1-opt2 207.64793 cost/residue, 834 clashes 0.13164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 146 83 / 427 = 0.19438 0.00413 ## JiggleSubtree 2 44 28 / 378 = 0.07407 0.00581 ## JiggleSegment 3 48 34 / 424 = 0.08019 0.00519 ## OptSubtree 0 0 0 / 91 = 0.00000 0.00000 ## OptSegment 0 1 1 / 212 = 0.00472 0.00165 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 90 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 73 = 0.00000 0.00000 ## TweakPhiSubtree 24 272 164 / 634 = 0.25868 0.00642 ## TweakPhiSegment 36 386 235 / 778 = 0.30206 0.00728 ## TweakPsiSubtree 1 253 187 / 711 = 0.26301 0.00682 ## TweakPsiSegment 2 347 230 / 836 = 0.27512 0.00844 ## TweakPsiPhiSubtree 65 271 161 / 554 = 0.29061 0.00526 ## TweakPsiPhiSegment 55 212 119 / 439 = 0.27107 0.00441 ## TweakHbondSubtree 9 185 125 / 589 = 0.21222 0.00555 ## TweakHbondSegment 7 211 118 / 550 = 0.21455 0.00552 ## TweakMultimer 132 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 87 57 / 184 = 0.30978 0.00115 ## FixOmega 2 0 0 / 75 = 0.00000 0.00000 ## Backrub 88 159 72 / 329 = 0.21884 0.00220 ## BigBackrub 57 51 27 / 212 = 0.12736 0.00217 ## OneRotamer 0 220 99 / 911 = 0.10867 0.00557 ## ClashingRotamer 1 3 1 / 154 = 0.00649 0.00085 ## ClusteredRotamer 15 4 2 / 131 = 0.01527 0.00088 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 181 = 0.00552 0.00015 ## CloseGap 0 19 6 / 243 = 0.02469 0.00672 ## HealGap 0 11 5 / 230 = 0.02174 0.00101 ## MoveGap 0 0 0 / 80 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 185 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 87 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 172 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 82 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 414 = 0.00000 0.00000 ## CrossOver 0 0 0 / 80 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 84 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 91 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)D136 # TweakPsiPhi removed gap before (T0547)K219 # TweakPsiPhi removed gap before (T0547)N404 # TweakPsiPhi removed gap before (T0547)D586 # TweakPsiSubtree removed gap before (T0547)P472 # TweakPsiSubtree removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)Q89 # TweakPsiPhi removed gap before (T0547)M571 # TweakPhi removed gap before (T0547)G322 # TweakPsiSubtree removed gap before (T0547)N541 # TweakPhi removed gap before (T0547)L108 # TweakPsiPhi removed gap before (T0547)I166 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPsiPhi removed gap before (T0547)Y366 # TweakPsiSubtree removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)N580 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K310 # TweakPsiPhi removed gap before (T0547)I551 # TweakPsiSubtree removed gap before (T0547)L362 # TweakPhi removed gap before (T0547)Q520 # TweakPsiSubtree removed gap before (T0547)D572 # TweakPsiSubtree removed gap before (T0547)L155 # TweakPsiSubtree removed gap before (T0547)K357 # TweakPsiSubtree removed gap before (T0547)L116 # TweakPsiSubtree removed gap before (T0547)G517 # TweakPsiSubtree removed gap before (T0547)L515 # TweakPsiPhi removed gap before (T0547)F447 # TweakPsiSubtree removed gap before (T0547)A121 # TweakPsiSubtree removed gap before (T0547)A405 # TweakPhi removed gap before (T0547)H410 # TweakPsiPhi removed gap before (T0547)V184 # TweakPsiPhi removed gap before (T0547)N528 # TweakPsiPhi removed gap before (T0547)D103 # TweakPsiPhi removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)N123 # TweakPsiPhi removed gap before (T0547)Q226 # TweakPsiSubtree removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)E521 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G45 # TweakPsiPhi removed gap before (T0547)K283 # TweakPsiPhi removed gap before (T0547)N13 # generation 109: best score out of 40: T0547.try1-opt2 207.57948 cost/residue, 834 clashes 0.13164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 148 85 / 433 = 0.19630 0.00416 ## JiggleSubtree 2 44 28 / 378 = 0.07407 0.00581 ## JiggleSegment 3 48 34 / 426 = 0.07981 0.00517 ## OptSubtree 0 0 0 / 91 = 0.00000 0.00000 ## OptSegment 0 1 1 / 213 = 0.00469 0.00164 ## OptAllSegments 0 0 0 / 77 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 90 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 73 = 0.00000 0.00000 ## TweakPhiSubtree 24 273 164 / 637 = 0.25746 0.00639 ## TweakPhiSegment 36 387 236 / 782 = 0.30179 0.00730 ## TweakPsiSubtree 1 256 189 / 721 = 0.26214 0.00682 ## TweakPsiSegment 2 352 230 / 848 = 0.27123 0.00832 ## TweakPsiPhiSubtree 66 274 163 / 559 = 0.29159 0.00529 ## TweakPsiPhiSegment 55 217 123 / 451 = 0.27273 0.00447 ## TweakHbondSubtree 9 188 126 / 599 = 0.21035 0.00546 ## TweakHbondSegment 7 213 120 / 561 = 0.21390 0.00554 ## TweakMultimer 133 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 88 57 / 187 = 0.30481 0.00113 ## FixOmega 2 0 0 / 75 = 0.00000 0.00000 ## Backrub 90 159 72 / 329 = 0.21884 0.00220 ## BigBackrub 57 51 27 / 214 = 0.12617 0.00215 ## OneRotamer 0 223 102 / 921 = 0.11075 0.00570 ## ClashingRotamer 1 3 1 / 155 = 0.00645 0.00084 ## ClusteredRotamer 15 4 2 / 132 = 0.01515 0.00087 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 182 = 0.00549 0.00014 ## CloseGap 0 19 6 / 243 = 0.02469 0.00672 ## HealGap 0 11 5 / 231 = 0.02165 0.00101 ## MoveGap 0 0 0 / 81 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 186 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 87 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 173 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 82 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 415 = 0.00000 0.00000 ## CrossOver 0 0 0 / 80 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 85 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 91 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)G594 # TweakPsiSubtree removed gap before (T0547)H242 # TweakPsiSubtree removed gap before (T0547)K17 # TweakPsiPhi removed gap before (T0547)N61 # TweakPhi removed gap before (T0547)Y104 # TweakPsiPhi removed gap before (T0547)D383 # TweakPsiPhi removed gap before (T0547)G274 # TweakPhi removed gap before (T0547)E457 # TweakPhi removed gap before (T0547)V442 # TweakPsiSubtree removed gap before (T0547)I157 # TweakPsiPhi removed gap before (T0547)D393 # TweakPhi removed gap before (T0547)E320 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPhi removed gap before (T0547)G274 # TweakPhi removed gap before (T0547)T207 # TweakPsiPhi removed gap before (T0547)E361 # TweakPsiPhi removed gap before (T0547)I573 # TweakPsiPhi removed gap before (T0547)G77 # TweakPhi removed gap before (T0547)R39 # TweakPhi removed gap before (T0547)D501 # TweakPsiPhi removed gap before (T0547)I241 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPhi removed gap before (T0547)V300 # TweakPhi removed gap before (T0547)I166 # TweakPsiPhi removed gap before (T0547)V184 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)E158 # TweakPsiSubtree removed gap before (T0547)R39 # TweakPsiSubtree removed gap before (T0547)E507 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)V87 # TweakPhi removed gap before (T0547)D494 # TweakPsiSubtree removed gap before (T0547)N13 # TweakPhi removed gap before (T0547)Y255 # TweakPsiSubtree removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)I140 # TweakPhi removed gap before (T0547)D168 # TweakPsiPhi removed gap before (T0547)Q58 # TweakPhi removed gap before (T0547)L583 # generation 110: best score out of 40: T0547.try1-opt2 207.48512 cost/residue, 830 clashes 0.13173 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 152 88 / 440 = 0.20000 0.00424 ## JiggleSubtree 2 44 28 / 379 = 0.07388 0.00579 ## JiggleSegment 3 48 34 / 428 = 0.07944 0.00514 ## OptSubtree 0 0 0 / 91 = 0.00000 0.00000 ## OptSegment 0 1 1 / 213 = 0.00469 0.00164 ## OptAllSegments 0 0 0 / 78 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 91 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 73 = 0.00000 0.00000 ## TweakPhiSubtree 24 275 166 / 647 = 0.25657 0.00630 ## TweakPhiSegment 36 390 237 / 788 = 0.30076 0.00725 ## TweakPsiSubtree 1 257 190 / 725 = 0.26207 0.00679 ## TweakPsiSegment 2 357 233 / 858 = 0.27156 0.00835 ## TweakPsiPhiSubtree 66 277 164 / 565 = 0.29027 0.00525 ## TweakPsiPhiSegment 55 220 124 / 459 = 0.27015 0.00449 ## TweakHbondSubtree 9 190 126 / 607 = 0.20758 0.00539 ## TweakHbondSegment 7 215 123 / 568 = 0.21655 0.00552 ## TweakMultimer 135 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 89 57 / 191 = 0.29843 0.00110 ## FixOmega 2 0 0 / 76 = 0.00000 0.00000 ## Backrub 92 160 72 / 331 = 0.21752 0.00219 ## BigBackrub 58 51 27 / 220 = 0.12273 0.00209 ## OneRotamer 0 223 102 / 924 = 0.11039 0.00568 ## ClashingRotamer 1 3 1 / 155 = 0.00645 0.00084 ## ClusteredRotamer 15 4 2 / 132 = 0.01515 0.00087 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 182 = 0.00549 0.00014 ## CloseGap 0 19 6 / 244 = 0.02459 0.00669 ## HealGap 0 11 5 / 233 = 0.02146 0.00100 ## MoveGap 0 0 0 / 82 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 188 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 87 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 175 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 83 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 417 = 0.00000 0.00000 ## CrossOver 0 0 0 / 82 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 85 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 91 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L358 # Healed gap before (T0547)Y344 residual break only 0.018 # TweakPsiSubtree removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)V547 # TweakPsiPhi removed gap before (T0547)K246 # TweakPsiSubtree removed gap before (T0547)L118 # TweakPsiSubtree removed gap before (T0547)D103 # TweakPhi removed gap before (T0547)D401 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A374 # TweakPsiSubtree removed gap before (T0547)D452 # TweakPsiSubtree removed gap before (T0547)D480 # TweakPhi removed gap before (T0547)G272 # TweakPsiSubtree removed gap before (T0547)E308 # TweakPhi removed gap before (T0547)N425 # TweakPsiSubtree removed gap before (T0547)P52 # TweakPsiSubtree removed gap before (T0547)E552 # TweakPhi removed gap before (T0547)I145 # TweakPsiPhi removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)I388 # TweakPsiSubtree removed gap before (T0547)N297 # TweakPsiSubtree removed gap before (T0547)I238 # TweakPsiSubtree removed gap before (T0547)S579 # TweakPhi removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPsiSubtree removed gap before (T0547)D480 # TweakPhi removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)T559 # TweakPhi removed gap before (T0547)K493 # TweakPhi removed gap before (T0547)E595 # TweakPsiSubtree removed gap before (T0547)I369 # TweakPhi removed gap before (T0547)A170 # TweakPsiPhi removed gap before (T0547)I573 # TweakPhi removed gap before (T0547)D434 # TweakPsiPhi removed gap before (T0547)D422 # TweakPhi removed gap before (T0547)F340 # TweakPhi removed gap before (T0547)A251 # TweakPhi removed gap before (T0547)L248 # TweakPsiSubtree removed gap before (T0547)H329 # generation 111: best score out of 40: T0547.try1-opt2 207.39195 cost/residue, 828 clashes 0.13165 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 155 91 / 446 = 0.20404 0.00425 ## JiggleSubtree 2 44 28 / 380 = 0.07368 0.00578 ## JiggleSegment 3 48 34 / 431 = 0.07889 0.00511 ## OptSubtree 0 0 0 / 92 = 0.00000 0.00000 ## OptSegment 0 1 1 / 213 = 0.00469 0.00164 ## OptAllSegments 0 0 0 / 79 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 91 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 73 = 0.00000 0.00000 ## TweakPhiSubtree 25 277 167 / 654 = 0.25535 0.00624 ## TweakPhiSegment 36 394 241 / 799 = 0.30163 0.00728 ## TweakPsiSubtree 1 258 191 / 731 = 0.26129 0.00675 ## TweakPsiSegment 2 363 237 / 870 = 0.27241 0.00830 ## TweakPsiPhiSubtree 66 277 164 / 567 = 0.28924 0.00523 ## TweakPsiPhiSegment 55 222 124 / 463 = 0.26782 0.00445 ## TweakHbondSubtree 9 192 129 / 617 = 0.20908 0.00531 ## TweakHbondSegment 7 217 124 / 577 = 0.21490 0.00548 ## TweakMultimer 138 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 90 57 / 193 = 0.29534 0.00109 ## FixOmega 2 0 0 / 76 = 0.00000 0.00000 ## Backrub 92 161 72 / 332 = 0.21687 0.00218 ## BigBackrub 59 52 27 / 221 = 0.12217 0.00208 ## OneRotamer 0 227 103 / 933 = 0.11040 0.00584 ## ClashingRotamer 1 3 1 / 158 = 0.00633 0.00083 ## ClusteredRotamer 15 4 2 / 132 = 0.01515 0.00087 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 182 = 0.00549 0.00014 ## CloseGap 0 19 6 / 244 = 0.02459 0.00669 ## HealGap 0 11 6 / 237 = 0.02532 0.00099 ## MoveGap 0 0 0 / 82 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 190 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 87 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 177 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 83 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 419 = 0.00000 0.00000 ## CrossOver 0 0 0 / 82 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 86 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 91 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)G199 # TweakPsiSubtree removed gap before (T0547)K245 # TweakPhi removed gap before (T0547)A247 # TweakPhi removed gap before (T0547)E294 # TweakPsiPhi removed gap before (T0547)I193 # TweakPhi removed gap before (T0547)G111 # TweakPsiSubtree removed gap before (T0547)Q520 # TweakPsiPhi removed gap before (T0547)V94 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPsiSubtree removed gap before (T0547)G190 # TweakPsiSubtree removed gap before (T0547)E125 # TweakPsiSubtree removed gap before (T0547)Q342 # TweakPsiSubtree removed gap before (T0547)L139 # TweakPsiSubtree removed gap before (T0547)A147 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPsiPhi removed gap before (T0547)R293 # TweakPsiSubtree removed gap before (T0547)L182 # TweakPhi removed gap before (T0547)R50 # TweakPsiPhi removed gap before (T0547)S197 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPhi removed gap before (T0547)G524 # TweakPsiSubtree removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)I212 # TweakPhi removed gap before (T0547)S368 # TweakPsiSubtree removed gap before (T0547)N541 # TweakPsiPhi removed gap before (T0547)S490 # TweakPsiSubtree removed gap before (T0547)G190 # TweakPsiPhi removed gap before (T0547)G273 # TweakPsiSubtree removed gap before (T0547)L560 # TweakPsiPhi removed gap before (T0547)I567 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L224 # TweakPsiPhi removed gap before (T0547)F392 # TweakPsiSubtree removed gap before (T0547)D469 # TweakPsiSubtree removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPsiPhi removed gap before (T0547)A121 # TweakPsiSubtree removed gap before (T0547)N201 # TweakPsiPhi removed gap before (T0547)A247 # TweakPsiPhi removed gap before (T0547)S321 # TweakPsiSubtree removed gap before (T0547)F204 # TweakPsiPhi removed gap before (T0547)A251 # TweakPsiPhi removed gap before (T0547)V21 # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiSubtree removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)D564 # TweakPsiPhi removed gap before (T0547)H384 # TweakPhi removed gap before (T0547)Y440 # TweakPsiPhi removed gap before (T0547)L118 # BackrubGuts cancelled---proline or break # generation 112: best score out of 40: T0547.try1-opt2 207.38710 cost/residue, 828 clashes 0.13153 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 158 94 / 451 = 0.20843 0.00430 ## JiggleSubtree 2 44 28 / 381 = 0.07349 0.00576 ## JiggleSegment 3 49 35 / 434 = 0.08065 0.00512 ## OptSubtree 0 0 0 / 92 = 0.00000 0.00000 ## OptSegment 0 1 1 / 213 = 0.00469 0.00164 ## OptAllSegments 0 0 0 / 80 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 91 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 73 = 0.00000 0.00000 ## TweakPhiSubtree 25 277 167 / 657 = 0.25419 0.00621 ## TweakPhiSegment 36 395 241 / 803 = 0.30012 0.00724 ## TweakPsiSubtree 1 261 192 / 738 = 0.26016 0.00669 ## TweakPsiSegment 2 372 243 / 890 = 0.27303 0.00855 ## TweakPsiPhiSubtree 66 280 165 / 576 = 0.28646 0.00516 ## TweakPsiPhiSegment 57 225 126 / 474 = 0.26582 0.00441 ## TweakHbondSubtree 9 193 130 / 621 = 0.20934 0.00528 ## TweakHbondSegment 7 219 125 / 583 = 0.21441 0.00545 ## TweakMultimer 141 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 92 57 / 195 = 0.29231 0.00108 ## FixOmega 2 0 0 / 76 = 0.00000 0.00000 ## Backrub 94 161 72 / 332 = 0.21687 0.00218 ## BigBackrub 59 53 27 / 223 = 0.12108 0.00207 ## OneRotamer 0 230 103 / 943 = 0.10923 0.00578 ## ClashingRotamer 1 3 1 / 158 = 0.00633 0.00083 ## ClusteredRotamer 15 4 2 / 133 = 0.01504 0.00087 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 182 = 0.00549 0.00014 ## CloseGap 0 19 6 / 245 = 0.02449 0.00666 ## HealGap 0 11 6 / 240 = 0.02500 0.00098 ## MoveGap 0 0 0 / 82 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 190 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 87 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 181 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 85 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 420 = 0.00000 0.00000 ## CrossOver 0 0 0 / 82 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 86 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 91 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)P46 # TweakPsiSubtree removed gap before (T0547)N601 # TweakPhi removed gap before (T0547)E376 # TweakPsiSubtree removed gap before (T0547)L49 # TweakPhi removed gap before (T0547)K304 # TweakPhi removed gap before (T0547)K17 # TweakPsiPhi removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)N355 # TweakPhi removed gap before (T0547)I319 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)E138 # TweakPhi removed gap before (T0547)G272 # TweakPhi removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)L468 # TweakPsiPhi removed gap before (T0547)Q309 # TweakPsiSubtree removed gap before (T0547)M525 # TweakPsiPhi removed gap before (T0547)I412 # TweakPhi removed gap before (T0547)N201 # TweakPhi removed gap before (T0547)L411 # TweakPsiSubtree removed gap before (T0547)A374 # TweakPsiSubtree removed gap before (T0547)G19 # TweakPhi removed gap before (T0547)E115 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPsiPhi removed gap before (T0547)I551 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPhi removed gap before (T0547)L600 # TweakPsiSubtree removed gap before (T0547)I319 # TweakPsiSubtree removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)I254 # TweakPsiPhi removed gap before (T0547)Q433 # TweakPsiSubtree removed gap before (T0547)D501 # TweakPsiPhi removed gap before (T0547)G74 # TweakPsiSubtree removed gap before (T0547)T409 # TweakPsiPhi removed gap before (T0547)H329 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I180 # TweakPsiSubtree removed gap before (T0547)K267 # TweakPsiPhi removed gap before (T0547)E314 # TweakPhi removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)A405 # TweakPsiSubtree removed gap before (T0547)D466 # TweakPsiSubtree removed gap before (T0547)T413 # TweakPsiPhi removed gap before (T0547)S475 # TweakPhi removed gap before (T0547)A268 # TweakPhi removed gap before (T0547)S280 # TweakPsiSubtree removed gap before (T0547)A170 # TweakPsiPhi removed gap before (T0547)G235 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPsiPhi removed gap before (T0547)N152 # TweakPsiSubtree removed gap before (T0547)I153 # TweakPsiSubtree removed gap before (T0547)N253 # TweakPsiPhi removed gap before (T0547)S236 # TweakPsiSubtree removed gap before (T0547)C22 # generation 113: best score out of 40: T0547.try1-opt2 207.35236 cost/residue, 826 clashes 0.13149 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 161 97 / 462 = 0.20996 0.00426 ## JiggleSubtree 2 44 28 / 381 = 0.07349 0.00576 ## JiggleSegment 3 49 35 / 437 = 0.08009 0.00509 ## OptSubtree 0 0 0 / 92 = 0.00000 0.00000 ## OptSegment 0 1 1 / 213 = 0.00469 0.00164 ## OptAllSegments 0 0 0 / 80 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 91 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 73 = 0.00000 0.00000 ## TweakPhiSubtree 25 283 169 / 665 = 0.25414 0.00615 ## TweakPhiSegment 36 397 242 / 810 = 0.29877 0.00723 ## TweakPsiSubtree 1 263 193 / 745 = 0.25906 0.00670 ## TweakPsiSegment 2 378 249 / 909 = 0.27393 0.00843 ## TweakPsiPhiSubtree 67 282 166 / 581 = 0.28571 0.00514 ## TweakPsiPhiSegment 58 227 126 / 481 = 0.26195 0.00435 ## TweakHbondSubtree 9 194 130 / 625 = 0.20800 0.00525 ## TweakHbondSegment 7 222 129 / 593 = 0.21754 0.00539 ## TweakMultimer 142 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 94 58 / 198 = 0.29293 0.00107 ## FixOmega 2 0 0 / 77 = 0.00000 0.00000 ## Backrub 94 162 72 / 334 = 0.21557 0.00217 ## BigBackrub 60 53 27 / 225 = 0.12000 0.00205 ## OneRotamer 0 230 103 / 950 = 0.10842 0.00573 ## ClashingRotamer 1 3 1 / 158 = 0.00633 0.00083 ## ClusteredRotamer 15 4 2 / 133 = 0.01504 0.00087 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 182 = 0.00549 0.00014 ## CloseGap 0 19 6 / 245 = 0.02449 0.00666 ## HealGap 0 11 6 / 241 = 0.02490 0.00097 ## MoveGap 0 0 0 / 82 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 190 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 87 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 181 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 85 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 422 = 0.00000 0.00000 ## CrossOver 0 0 0 / 82 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 86 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 92 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L271 # TweakPhi removed gap before (T0547)N13 # TweakPsiSubtree removed gap before (T0547)D40 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPsiSubtree removed gap before (T0547)I34 # TweakPsiSubtree removed gap before (T0547)K353 # TweakPhi removed gap before (T0547)E546 # TweakPsiSubtree removed gap before (T0547)D401 # TweakPsiPhi removed gap before (T0547)L337 # TweakPsiPhi removed gap before (T0547)L97 # TweakPhi removed gap before (T0547)L358 # TweakPsiSubtree removed gap before (T0547)L499 # TweakPsiPhi removed gap before (T0547)G111 # TweakPhi removed gap before (T0547)I180 # TweakPhi removed gap before (T0547)I166 # TweakPsiSubtree removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)F204 # TweakPsiSubtree removed gap before (T0547)F144 # TweakPsiPhi removed gap before (T0547)Y440 # TweakPsiSubtree removed gap before (T0547)H187 # TweakPsiSubtree removed gap before (T0547)M571 # TweakPhi removed gap before (T0547)R70 # TweakPsiPhi removed gap before (T0547)G524 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)E521 # TweakPhi removed gap before (T0547)W454 # TweakPsiSubtree removed gap before (T0547)E314 # TweakPsiPhi removed gap before (T0547)L362 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPsiSubtree removed gap before (T0547)T239 # TweakPhi removed gap before (T0547)I241 # TweakPsiSubtree removed gap before (T0547)P315 # TweakPsiSubtree removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)Q588 # TweakPsiSubtree removed gap before (T0547)A214 # TweakPsiPhi removed gap before (T0547)D503 # TweakPsiSubtree removed gap before (T0547)N425 # TweakPhi removed gap before (T0547)D136 # TweakPhi removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)S492 # TweakPhi removed gap before (T0547)K177 # TweakPsiSubtree removed gap before (T0547)E308 # TweakPhi removed gap before (T0547)E470 # TweakPhi removed gap before (T0547)G92 # TweakPsiSubtree removed gap before (T0547)E164 # TweakPhi removed gap before (T0547)G524 # TweakPhi removed gap before (T0547)D7 # TweakPhi removed gap before (T0547)I551 # TweakPsiSubtree removed gap before (T0547)T531 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPhi removed gap before (T0547)I167 # TweakPhi removed gap before (T0547)S202 # generation 114: best score out of 40: T0547.try1-opt2 207.30501 cost/residue, 833 clashes 0.13080 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 163 98 / 470 = 0.20851 0.00423 ## JiggleSubtree 2 44 28 / 381 = 0.07349 0.00576 ## JiggleSegment 4 49 35 / 440 = 0.07955 0.00505 ## OptSubtree 0 0 0 / 93 = 0.00000 0.00000 ## OptSegment 0 1 1 / 213 = 0.00469 0.00164 ## OptAllSegments 0 0 0 / 80 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 91 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 73 = 0.00000 0.00000 ## TweakPhiSubtree 25 288 174 / 675 = 0.25778 0.00614 ## TweakPhiSegment 36 401 244 / 820 = 0.29756 0.00722 ## TweakPsiSubtree 1 264 195 / 752 = 0.25931 0.00667 ## TweakPsiSegment 2 383 255 / 934 = 0.27302 0.00834 ## TweakPsiPhiSubtree 69 284 168 / 588 = 0.28571 0.00513 ## TweakPsiPhiSegment 58 228 126 / 484 = 0.26033 0.00432 ## TweakHbondSubtree 10 194 130 / 630 = 0.20635 0.00520 ## TweakHbondSegment 7 224 130 / 598 = 0.21739 0.00544 ## TweakMultimer 142 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 94 58 / 200 = 0.29000 0.00106 ## FixOmega 2 0 0 / 77 = 0.00000 0.00000 ## Backrub 94 163 72 / 335 = 0.21493 0.00216 ## BigBackrub 60 53 27 / 225 = 0.12000 0.00205 ## OneRotamer 0 232 104 / 958 = 0.10856 0.00572 ## ClashingRotamer 1 3 1 / 158 = 0.00633 0.00083 ## ClusteredRotamer 15 4 2 / 133 = 0.01504 0.00087 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 183 = 0.00546 0.00014 ## CloseGap 0 19 6 / 245 = 0.02449 0.00666 ## HealGap 0 11 6 / 241 = 0.02490 0.00097 ## MoveGap 0 0 0 / 83 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 191 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 87 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 181 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 85 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 424 = 0.00000 0.00000 ## CrossOver 0 0 0 / 82 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 86 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 92 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)A276 # TweakPsiPhi removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)V131 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPsiSubtree removed gap before (T0547)E457 # TweakPsiSubtree removed gap before (T0547)D602 # TweakPsiSubtree removed gap before (T0547)E320 # TweakPhi removed gap before (T0547)I129 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)F134 # TweakPsiSubtree removed gap before (T0547)K267 # TweakPsiPhi removed gap before (T0547)S485 # TweakPsiPhi removed gap before (T0547)S579 # TweakPhi removed gap before (T0547)A119 # TweakPsiSubtree removed gap before (T0547)K86 # TweakPsiSubtree removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPsiPhi removed gap before (T0547)E546 # TweakPhi removed gap before (T0547)F498 # TweakPhi removed gap before (T0547)K95 # TweakPhi removed gap before (T0547)E148 # TweakPsiSubtree removed gap before (T0547)N249 # TweakPsiPhi removed gap before (T0547)L557 # TweakPsiSubtree removed gap before (T0547)F444 # TweakPhi removed gap before (T0547)V184 # TweakPsiSubtree removed gap before (T0547)E278 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPsiSubtree removed gap before (T0547)L394 # TweakPsiSubtree removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)G111 # TweakPsiSubtree removed gap before (T0547)L163 # TweakPsiPhi removed gap before (T0547)I212 # TweakPhi removed gap before (T0547)T256 # TweakPsiSubtree removed gap before (T0547)K28 # TweakPhi removed gap before (T0547)E535 # TweakPsiSubtree removed gap before (T0547)G487 # TweakPsiPhi removed gap before (T0547)G111 # TweakPsiSubtree removed gap before (T0547)M463 # TweakPsiSubtree removed gap before (T0547)N24 # TweakPsiSubtree removed gap before (T0547)K415 # TweakPsiPhi removed gap before (T0547)Q281 # TweakPsiSubtree removed gap before (T0547)E220 # TweakPhi removed gap before (T0547)L523 # generation 115: best score out of 40: T0547.try1-opt2 207.16946 cost/residue, 822 clashes 0.13199 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 164 98 / 477 = 0.20545 0.00416 ## JiggleSubtree 2 44 28 / 383 = 0.07311 0.00573 ## JiggleSegment 4 49 35 / 441 = 0.07937 0.00504 ## OptSubtree 0 0 0 / 94 = 0.00000 0.00000 ## OptSegment 0 1 1 / 215 = 0.00465 0.00163 ## OptAllSegments 0 0 0 / 84 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 91 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 75 = 0.00000 0.00000 ## TweakPhiSubtree 25 290 176 / 678 = 0.25959 0.00618 ## TweakPhiSegment 36 405 248 / 827 = 0.29988 0.00730 ## TweakPsiSubtree 1 266 197 / 762 = 0.25853 0.00662 ## TweakPsiSegment 2 388 258 / 948 = 0.27215 0.00848 ## TweakPsiPhiSubtree 69 285 169 / 591 = 0.28596 0.00517 ## TweakPsiPhiSegment 58 230 126 / 490 = 0.25714 0.00427 ## TweakHbondSubtree 10 196 132 / 635 = 0.20787 0.00524 ## TweakHbondSegment 7 226 130 / 607 = 0.21417 0.00536 ## TweakMultimer 143 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 95 59 / 202 = 0.29208 0.00109 ## FixOmega 2 0 0 / 77 = 0.00000 0.00000 ## Backrub 94 164 73 / 337 = 0.21662 0.00215 ## BigBackrub 60 54 27 / 227 = 0.11894 0.00203 ## OneRotamer 0 233 104 / 968 = 0.10744 0.00566 ## ClashingRotamer 1 3 1 / 158 = 0.00633 0.00083 ## ClusteredRotamer 15 4 2 / 133 = 0.01504 0.00087 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 184 = 0.00543 0.00014 ## CloseGap 0 19 6 / 245 = 0.02449 0.00666 ## HealGap 0 11 6 / 244 = 0.02459 0.00096 ## MoveGap 0 0 0 / 83 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 193 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 87 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 181 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 85 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 426 = 0.00000 0.00000 ## CrossOver 0 0 0 / 82 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 86 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 92 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPhi removed gap before (T0547)I31 # TweakPsiSubtree removed gap before (T0547)G107 # TweakPsiSubtree removed gap before (T0547)Q56 # TweakPhi removed gap before (T0547)S372 # TweakPsiPhi removed gap before (T0547)R474 # TweakPhi removed gap before (T0547)N152 # TweakPsiSubtree removed gap before (T0547)V35 # TweakPsiSubtree removed gap before (T0547)K304 # TweakPsiPhi removed gap before (T0547)V397 # TweakPsiPhi removed gap before (T0547)N249 # TweakPhi removed gap before (T0547)A263 # TweakPhi removed gap before (T0547)E435 # TweakPhi removed gap before (T0547)G198 # TweakPhi removed gap before (T0547)N18 # TweakPsiSubtree removed gap before (T0547)P84 # TweakPhi removed gap before (T0547)D494 # TweakPhi removed gap before (T0547)G594 # TweakPsiSubtree removed gap before (T0547)S197 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPhi removed gap before (T0547)I241 # TweakPsiPhi removed gap before (T0547)L375 # TweakPhi removed gap before (T0547)L211 # TweakPsiPhi removed gap before (T0547)A296 # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiPhi removed gap before (T0547)G604 # TweakPsiPhi removed gap before (T0547)T207 # TweakPsiPhi removed gap before (T0547)L385 # TweakPsiSubtree removed gap before (T0547)S321 # TweakPsiSubtree removed gap before (T0547)K17 # TweakPhi removed gap before (T0547)K260 # TweakPsiPhi removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)D40 # TweakPsiSubtree removed gap before (T0547)F204 # TweakPsiSubtree removed gap before (T0547)Q309 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I241 # TweakPhi removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)L258 # TweakPhi removed gap before (T0547)L160 # TweakPsiPhi removed gap before (T0547)R183 # TweakPsiSubtree removed gap before (T0547)I129 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiSubtree removed gap before (T0547)L420 # TweakPsiPhi removed gap before (T0547)S539 # TweakPsiPhi removed gap before (T0547)S280 # TweakPhi removed gap before (T0547)I550 # generation 116: best score out of 40: T0547.try1-opt2 207.16286 cost/residue, 829 clashes 0.13185 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 164 98 / 481 = 0.20374 0.00413 ## JiggleSubtree 2 44 28 / 383 = 0.07311 0.00573 ## JiggleSegment 4 49 35 / 444 = 0.07883 0.00501 ## OptSubtree 0 0 0 / 94 = 0.00000 0.00000 ## OptSegment 0 1 1 / 216 = 0.00463 0.00162 ## OptAllSegments 0 0 0 / 84 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 91 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 76 = 0.00000 0.00000 ## TweakPhiSubtree 26 293 178 / 684 = 0.26023 0.00636 ## TweakPhiSegment 36 412 254 / 838 = 0.30310 0.00727 ## TweakPsiSubtree 1 270 200 / 770 = 0.25974 0.00657 ## TweakPsiSegment 2 390 259 / 959 = 0.27007 0.00838 ## TweakPsiPhiSubtree 69 288 171 / 598 = 0.28595 0.00517 ## TweakPsiPhiSegment 58 230 127 / 498 = 0.25502 0.00420 ## TweakHbondSubtree 10 200 134 / 640 = 0.20938 0.00526 ## TweakHbondSegment 8 232 133 / 620 = 0.21452 0.00545 ## TweakMultimer 147 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 95 59 / 202 = 0.29208 0.00109 ## FixOmega 2 0 0 / 78 = 0.00000 0.00000 ## Backrub 95 165 74 / 340 = 0.21765 0.00217 ## BigBackrub 60 54 27 / 229 = 0.11790 0.00201 ## OneRotamer 0 234 104 / 977 = 0.10645 0.00561 ## ClashingRotamer 1 3 1 / 159 = 0.00629 0.00082 ## ClusteredRotamer 15 4 2 / 133 = 0.01504 0.00087 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 186 = 0.00538 0.00014 ## CloseGap 0 19 6 / 245 = 0.02449 0.00666 ## HealGap 0 12 7 / 246 = 0.02846 0.00095 ## MoveGap 0 0 0 / 83 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 193 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 87 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 181 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 86 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 427 = 0.00000 0.00000 ## CrossOver 0 0 0 / 82 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 86 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 92 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G604 # TweakPsiPhi removed gap before (T0547)F227 # TweakPsiPhi removed gap before (T0547)Y63 # TweakPhi removed gap before (T0547)E285 # TweakPsiPhi removed gap before (T0547)T228 # TweakPsiPhi removed gap before (T0547)G487 # TweakPsiPhi removed gap before (T0547)T559 # TweakPsiPhi removed gap before (T0547)R577 # TweakPhi removed gap before (T0547)Y491 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)F144 # TweakPsiSubtree removed gap before (T0547)G252 # TweakPhi removed gap before (T0547)G92 # TweakPsiPhi removed gap before (T0547)E257 # TweakPsiPhi removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)R293 # TweakPhi removed gap before (T0547)S492 # TweakPsiPhi removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)V300 # TweakPsiSubtree removed gap before (T0547)L182 # TweakPhi removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)L38 # TweakPsiPhi removed gap before (T0547)E470 # TweakPhi removed gap before (T0547)L499 # TweakPsiPhi removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)Y104 # TweakPhi removed gap before (T0547)N24 # TweakPhi removed gap before (T0547)C22 # TweakPhi removed gap before (T0547)L339 # TweakPhi removed gap before (T0547)E343 # TweakPsiSubtree removed gap before (T0547)E548 # TweakPhi removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)G421 # TweakPsiPhi removed gap before (T0547)F514 # TweakPsiSubtree removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)G111 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)R402 # TweakPhi removed gap before (T0547)E488 # TweakPsiSubtree removed gap before (T0547)L606 # TweakPhi removed gap before (T0547)L499 # TweakPhi removed gap before (T0547)N289 # TweakPsiSubtree removed gap before (T0547)A195 # TweakPsiSubtree removed gap before (T0547)D401 # TweakPhi removed gap before (T0547)L332 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPsiPhi removed gap before (T0547)H151 # BackrubGuts cancelled---proline or break # generation 117: best score out of 40: T0547.try1-opt2 207.05884 cost/residue, 825 clashes 0.13049 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 166 100 / 489 = 0.20450 0.00426 ## JiggleSubtree 2 44 28 / 384 = 0.07292 0.00572 ## JiggleSegment 4 49 35 / 446 = 0.07848 0.00498 ## OptSubtree 0 0 0 / 94 = 0.00000 0.00000 ## OptSegment 0 1 1 / 216 = 0.00463 0.00162 ## OptAllSegments 0 0 0 / 85 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 91 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 76 = 0.00000 0.00000 ## TweakPhiSubtree 26 297 180 / 692 = 0.26012 0.00631 ## TweakPhiSegment 37 421 257 / 854 = 0.30094 0.00718 ## TweakPsiSubtree 1 271 200 / 774 = 0.25840 0.00654 ## TweakPsiSegment 2 393 261 / 968 = 0.26963 0.00831 ## TweakPsiPhiSubtree 70 290 171 / 604 = 0.28311 0.00512 ## TweakPsiPhiSegment 58 234 130 / 505 = 0.25743 0.00419 ## TweakHbondSubtree 10 200 135 / 648 = 0.20833 0.00520 ## TweakHbondSegment 8 235 134 / 626 = 0.21406 0.00568 ## TweakMultimer 149 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 95 59 / 202 = 0.29208 0.00109 ## FixOmega 2 0 0 / 78 = 0.00000 0.00000 ## Backrub 98 165 74 / 343 = 0.21574 0.00215 ## BigBackrub 60 55 27 / 230 = 0.11739 0.00200 ## OneRotamer 0 235 106 / 987 = 0.10740 0.00558 ## ClashingRotamer 1 3 1 / 161 = 0.00621 0.00081 ## ClusteredRotamer 15 4 2 / 135 = 0.01481 0.00085 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 186 = 0.00538 0.00014 ## CloseGap 0 19 6 / 245 = 0.02449 0.00666 ## HealGap 0 12 7 / 247 = 0.02834 0.00095 ## MoveGap 0 0 0 / 83 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 193 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 87 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 182 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 87 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 429 = 0.00000 0.00000 ## CrossOver 0 0 0 / 82 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 86 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 93 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)K587 # TweakPhi removed gap before (T0547)I31 # TweakPsiPhi removed gap before (T0547)F204 # TweakPsiSubtree removed gap before (T0547)P29 # TweakPhi removed gap before (T0547)Y396 # TweakPhi removed gap before (T0547)L155 # TweakPsiPhi removed gap before (T0547)H568 # TweakPhi removed gap before (T0547)M571 # TweakPsiPhi removed gap before (T0547)D168 # TweakPsiPhi removed gap before (T0547)N80 # TweakPsiSubtree removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)D168 # TweakPsiSubtree removed gap before (T0547)N105 # TweakPsiSubtree removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)I241 # TweakPsiSubtree removed gap before (T0547)G126 # TweakPhi removed gap before (T0547)N541 # TweakPsiPhi removed gap before (T0547)Y104 # TweakPhi removed gap before (T0547)Y363 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPsiSubtree removed gap before (T0547)A165 # TweakPsiSubtree removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)I319 # TweakPsiPhi removed gap before (T0547)A427 # TweakPhi removed gap before (T0547)M450 # TweakPhi removed gap before (T0547)E535 # TweakPhi removed gap before (T0547)K28 # TweakPsiSubtree removed gap before (T0547)K27 # TweakPhi removed gap before (T0547)L217 # TweakPsiSubtree removed gap before (T0547)N425 # TweakPsiSubtree removed gap before (T0547)L49 # TweakPhi removed gap before (T0547)S112 # TweakPsiSubtree removed gap before (T0547)K219 # TweakPhi removed gap before (T0547)L418 # TweakPsiPhi removed gap before (T0547)L116 # TweakPhi removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)L606 # TweakPsiSubtree removed gap before (T0547)E457 # TweakPsiSubtree removed gap before (T0547)E386 # TweakPhi removed gap before (T0547)G205 # TweakPhi removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)L163 # TweakPhi removed gap before (T0547)Q554 # TweakPsiPhi removed gap before (T0547)D572 # generation 118: best score out of 40: T0547.try1-opt2 206.98216 cost/residue, 828 clashes 0.13041 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 167 100 / 495 = 0.20202 0.00421 ## JiggleSubtree 2 44 28 / 385 = 0.07273 0.00570 ## JiggleSegment 4 49 35 / 448 = 0.07812 0.00496 ## OptSubtree 0 0 0 / 95 = 0.00000 0.00000 ## OptSegment 0 1 1 / 217 = 0.00461 0.00161 ## OptAllSegments 0 0 0 / 86 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 91 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 76 = 0.00000 0.00000 ## TweakPhiSubtree 26 299 183 / 702 = 0.26068 0.00637 ## TweakPhiSegment 38 425 259 / 865 = 0.29942 0.00713 ## TweakPsiSubtree 1 272 201 / 777 = 0.25869 0.00652 ## TweakPsiSegment 2 401 267 / 982 = 0.27189 0.00838 ## TweakPsiPhiSubtree 70 293 172 / 609 = 0.28243 0.00510 ## TweakPsiPhiSegment 59 236 130 / 508 = 0.25591 0.00417 ## TweakHbondSubtree 10 202 136 / 661 = 0.20575 0.00511 ## TweakHbondSegment 9 236 135 / 632 = 0.21361 0.00563 ## TweakMultimer 149 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 95 59 / 204 = 0.28922 0.00108 ## FixOmega 2 0 0 / 78 = 0.00000 0.00000 ## Backrub 98 166 74 / 346 = 0.21387 0.00213 ## BigBackrub 60 55 27 / 231 = 0.11688 0.00199 ## OneRotamer 0 235 106 / 996 = 0.10643 0.00553 ## ClashingRotamer 1 3 1 / 161 = 0.00621 0.00081 ## ClusteredRotamer 15 4 2 / 135 = 0.01481 0.00085 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 186 = 0.00538 0.00014 ## CloseGap 0 19 6 / 245 = 0.02449 0.00666 ## HealGap 0 12 7 / 250 = 0.02800 0.00094 ## MoveGap 0 0 0 / 83 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 194 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 87 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 182 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 88 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 429 = 0.00000 0.00000 ## CrossOver 0 0 0 / 82 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 87 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 95 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)H151 # TweakPsiSubtree removed gap before (T0547)G198 # TweakPhi removed gap before (T0547)D364 # TweakPsiPhi removed gap before (T0547)I333 # TweakPhi removed gap before (T0547)W479 # TweakPsiSubtree removed gap before (T0547)F453 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)E552 # TweakPhi removed gap before (T0547)Y366 # TweakPsiSubtree removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)D41 # TweakPsiPhi removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)A247 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)S492 # TweakPsiSubtree removed gap before (T0547)A405 # TweakPsiPhi removed gap before (T0547)E220 # TweakPhi removed gap before (T0547)L224 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)H379 # TweakPhi removed gap before (T0547)G19 # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPsiPhi removed gap before (T0547)H500 # TweakPhi removed gap before (T0547)S539 # TweakPhi removed gap before (T0547)E505 # TweakPhi removed gap before (T0547)L378 # TweakPsiSubtree removed gap before (T0547)L408 # TweakPsiSubtree removed gap before (T0547)N284 # TweakPhi removed gap before (T0547)Y605 # TweakPhi removed gap before (T0547)E376 # TweakPhi removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)Q342 # TweakPsiPhi removed gap before (T0547)F51 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)G64 # TweakPhi removed gap before (T0547)A189 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Q237 # TweakPsiSubtree removed gap before (T0547)R259 # TweakPsiPhi removed gap before (T0547)E435 # TweakPhi removed gap before (T0547)I32 # TweakPsiSubtree removed gap before (T0547)Y295 # TweakPhi removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)K102 # TweakPhi removed gap before (T0547)V82 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A69 # TweakPhi removed gap before (T0547)I369 # TweakPhi removed gap before (T0547)S368 # TweakPsiSubtree removed gap before (T0547)V98 # TweakPsiSubtree removed gap before (T0547)I556 # TweakPsiSubtree removed gap before (T0547)F227 # TweakPhi removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)M261 # generation 119: best score out of 40: T0547.try1-opt2 206.87569 cost/residue, 819 clashes 0.13054 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 171 103 / 504 = 0.20437 0.00414 ## JiggleSubtree 2 44 28 / 386 = 0.07254 0.00569 ## JiggleSegment 4 49 35 / 448 = 0.07812 0.00496 ## OptSubtree 0 0 0 / 96 = 0.00000 0.00000 ## OptSegment 0 1 1 / 217 = 0.00461 0.00161 ## OptAllSegments 0 0 0 / 86 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 92 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 76 = 0.00000 0.00000 ## TweakPhiSubtree 26 304 186 / 712 = 0.26124 0.00642 ## TweakPhiSegment 38 429 260 / 877 = 0.29647 0.00718 ## TweakPsiSubtree 1 276 202 / 784 = 0.25765 0.00648 ## TweakPsiSegment 2 406 271 / 997 = 0.27182 0.00858 ## TweakPsiPhiSubtree 70 294 172 / 614 = 0.28013 0.00506 ## TweakPsiPhiSegment 59 238 131 / 511 = 0.25636 0.00415 ## TweakHbondSubtree 10 203 136 / 667 = 0.20390 0.00506 ## TweakHbondSegment 9 241 138 / 641 = 0.21529 0.00565 ## TweakMultimer 150 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 96 60 / 206 = 0.29126 0.00113 ## FixOmega 2 0 0 / 79 = 0.00000 0.00000 ## Backrub 101 167 74 / 347 = 0.21326 0.00212 ## BigBackrub 62 55 27 / 233 = 0.11588 0.00198 ## OneRotamer 0 235 106 / 1001 = 0.10589 0.00551 ## ClashingRotamer 1 3 1 / 161 = 0.00621 0.00081 ## ClusteredRotamer 15 4 2 / 135 = 0.01481 0.00085 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 186 = 0.00538 0.00014 ## CloseGap 0 19 6 / 245 = 0.02449 0.00666 ## HealGap 0 12 7 / 253 = 0.02767 0.00093 ## MoveGap 0 0 0 / 84 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 196 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 87 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 184 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 88 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 430 = 0.00000 0.00000 ## CrossOver 0 0 0 / 83 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 87 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 95 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)G610 # TweakPsiPhi removed gap before (T0547)L560 # TweakPhi removed gap before (T0547)T239 # TweakPsiSubtree removed gap before (T0547)N201 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)G610 # TweakPsiSubtree removed gap before (T0547)L139 # TweakPsiPhi removed gap before (T0547)A330 # TweakPhi removed gap before (T0547)I193 # TweakPsiPhi removed gap before (T0547)V522 # TweakPhi removed gap before (T0547)G92 # TweakPhi removed gap before (T0547)L358 # TweakPsiSubtree removed gap before (T0547)L557 # TweakPhi removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)E213 # TweakPhi removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)L465 # TweakPhi removed gap before (T0547)A374 # TweakPsiSubtree removed gap before (T0547)A247 # TweakPsiSubtree removed gap before (T0547)I570 # TweakPsiPhi removed gap before (T0547)G107 # TweakPhi removed gap before (T0547)S202 # TweakPhi removed gap before (T0547)E225 # TweakPhi removed gap before (T0547)L515 # TweakPhi removed gap before (T0547)A195 # TweakPsiPhi removed gap before (T0547)N249 # TweakPhi removed gap before (T0547)R183 # TweakPsiPhi removed gap before (T0547)K17 # TweakPsiPhi removed gap before (T0547)N305 # TweakPsiPhi removed gap before (T0547)I478 # TweakPsiSubtree removed gap before (T0547)G107 # TweakPhi removed gap before (T0547)I166 # TweakPhi removed gap before (T0547)I166 # TweakPsiSubtree removed gap before (T0547)T390 # TweakPsiPhi removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)A553 # TweakPsiSubtree removed gap before (T0547)L385 # TweakPhi removed gap before (T0547)D3 # TweakPsiSubtree removed gap before (T0547)K17 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)F144 # generation 120: best score out of 40: T0547.try1-opt2 206.81853 cost/residue, 824 clashes 0.13054 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 173 104 / 516 = 0.20155 0.00404 ## JiggleSubtree 2 44 28 / 386 = 0.07254 0.00569 ## JiggleSegment 5 50 36 / 450 = 0.08000 0.00511 ## OptSubtree 0 0 0 / 96 = 0.00000 0.00000 ## OptSegment 0 1 1 / 217 = 0.00461 0.00161 ## OptAllSegments 0 0 0 / 87 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 92 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 76 = 0.00000 0.00000 ## TweakPhiSubtree 27 310 192 / 729 = 0.26337 0.00633 ## TweakPhiSegment 39 431 261 / 882 = 0.29592 0.00717 ## TweakPsiSubtree 1 277 202 / 786 = 0.25700 0.00647 ## TweakPsiSegment 2 410 274 / 1008 = 0.27183 0.00853 ## TweakPsiPhiSubtree 70 297 174 / 618 = 0.28155 0.00509 ## TweakPsiPhiSegment 59 240 132 / 516 = 0.25581 0.00411 ## TweakHbondSubtree 10 206 136 / 674 = 0.20178 0.00501 ## TweakHbondSegment 9 245 140 / 651 = 0.21505 0.00561 ## TweakMultimer 150 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 96 60 / 207 = 0.28986 0.00112 ## FixOmega 2 0 0 / 79 = 0.00000 0.00000 ## Backrub 101 167 74 / 349 = 0.21203 0.00211 ## BigBackrub 62 56 28 / 235 = 0.11915 0.00220 ## OneRotamer 0 235 106 / 1009 = 0.10505 0.00546 ## ClashingRotamer 1 3 1 / 163 = 0.00613 0.00080 ## ClusteredRotamer 15 4 2 / 136 = 0.01471 0.00085 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 187 = 0.00535 0.00014 ## CloseGap 0 19 6 / 247 = 0.02429 0.00661 ## HealGap 0 12 7 / 255 = 0.02745 0.00092 ## MoveGap 0 0 0 / 85 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 196 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 88 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 184 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 88 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 431 = 0.00000 0.00000 ## CrossOver 0 0 0 / 83 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 87 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 95 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L47 # TweakPhi removed gap before (T0547)V215 # TweakPsiPhi removed gap before (T0547)N328 # TweakPsiPhi removed gap before (T0547)V584 # TweakPsiPhi removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)K27 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPhi removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)G181 # TweakPhi removed gap before (T0547)L497 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPsiSubtree removed gap before (T0547)L358 # TweakPhi removed gap before (T0547)F530 # TweakPsiSubtree removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)L182 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L358 # TweakPhi removed gap before (T0547)N61 # TweakPsiSubtree removed gap before (T0547)H53 # TweakPsiSubtree removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)R39 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPsiSubtree removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)L258 # TweakPhi removed gap before (T0547)L47 # TweakPhi removed gap before (T0547)K357 # TweakPhi removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)W454 # TweakPsiSubtree removed gap before (T0547)Q237 # TweakPsiSubtree removed gap before (T0547)E308 # TweakPhi removed gap before (T0547)M571 # TweakPsiPhi removed gap before (T0547)A374 # TweakPsiSubtree removed gap before (T0547)H532 # TweakPhi removed gap before (T0547)G192 # TweakPsiSubtree removed gap before (T0547)K177 # TweakPhi removed gap before (T0547)L574 # TweakPsiSubtree removed gap before (T0547)S485 # TweakPhi removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)D3 # TweakPsiPhi removed gap before (T0547)K68 # TweakPhi removed gap before (T0547)L351 # TweakPsiPhi removed gap before (T0547)D566 # TweakPsiSubtree removed gap before (T0547)D602 # generation 121: best score out of 40: T0547.try1-opt2 206.70973 cost/residue, 825 clashes 0.13039 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 174 104 / 520 = 0.20000 0.00401 ## JiggleSubtree 2 44 28 / 387 = 0.07235 0.00567 ## JiggleSegment 5 52 37 / 453 = 0.08168 0.00507 ## OptSubtree 0 0 0 / 96 = 0.00000 0.00000 ## OptSegment 0 1 1 / 219 = 0.00457 0.00160 ## OptAllSegments 0 0 0 / 88 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 94 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 77 = 0.00000 0.00000 ## TweakPhiSubtree 27 316 194 / 741 = 0.26181 0.00650 ## TweakPhiSegment 39 431 262 / 888 = 0.29505 0.00712 ## TweakPsiSubtree 1 281 204 / 796 = 0.25628 0.00666 ## TweakPsiSegment 2 415 277 / 1018 = 0.27210 0.00852 ## TweakPsiPhiSubtree 71 299 175 / 621 = 0.28180 0.00507 ## TweakPsiPhiSegment 59 242 133 / 521 = 0.25528 0.00413 ## TweakHbondSubtree 10 208 137 / 679 = 0.20177 0.00504 ## TweakHbondSegment 9 246 141 / 663 = 0.21267 0.00554 ## TweakMultimer 151 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 97 60 / 209 = 0.28708 0.00111 ## FixOmega 2 0 0 / 79 = 0.00000 0.00000 ## Backrub 101 168 75 / 350 = 0.21429 0.00211 ## BigBackrub 64 56 28 / 238 = 0.11765 0.00218 ## OneRotamer 0 235 106 / 1015 = 0.10443 0.00543 ## ClashingRotamer 1 3 1 / 163 = 0.00613 0.00080 ## ClusteredRotamer 15 4 2 / 137 = 0.01460 0.00084 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 189 = 0.00529 0.00014 ## CloseGap 0 19 6 / 248 = 0.02419 0.00658 ## HealGap 0 12 7 / 256 = 0.02734 0.00092 ## MoveGap 0 0 0 / 85 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 197 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 88 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 185 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 88 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 433 = 0.00000 0.00000 ## CrossOver 0 0 0 / 84 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 88 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 95 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)E457 # TweakPsiPhi removed gap before (T0547)L362 # TweakPsiSubtree removed gap before (T0547)H151 # TweakPhi removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)L456 # TweakPsiSubtree removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)N253 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)L446 # TweakPhi removed gap before (T0547)K171 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A405 # TweakPhi removed gap before (T0547)A110 # TweakPsiSubtree removed gap before (T0547)P335 # TweakPhi removed gap before (T0547)L218 # TweakPhi removed gap before (T0547)R323 # TweakPsiSubtree removed gap before (T0547)P176 # TweakPhi removed gap before (T0547)K493 # TweakPsiSubtree removed gap before (T0547)G455 # TweakPsiSubtree removed gap before (T0547)F301 # TweakPsiSubtree removed gap before (T0547)I302 # TweakPsiSubtree removed gap before (T0547)N580 # TweakPsiPhi removed gap before (T0547)M571 # TweakPhi removed gap before (T0547)E435 # TweakPsiSubtree removed gap before (T0547)D383 # TweakPsiSubtree removed gap before (T0547)L351 # TweakPsiPhi removed gap before (T0547)T228 # TweakPsiSubtree removed gap before (T0547)T256 # TweakPhi removed gap before (T0547)L234 # TweakPhi removed gap before (T0547)M571 # TweakPsiSubtree removed gap before (T0547)H532 # TweakPsiSubtree removed gap before (T0547)R183 # TweakPhi removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)Y90 # TweakPhi removed gap before (T0547)S403 # TweakPsiPhi removed gap before (T0547)M120 # TweakPhi removed gap before (T0547)L97 # TweakPhi removed gap before (T0547)N18 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)L49 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiPhi removed gap before (T0547)E278 # TweakPsiSubtree removed gap before (T0547)D312 # TweakPsiSubtree removed gap before (T0547)G262 # TweakPsiSubtree removed gap before (T0547)Y366 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)A147 # generation 122: best score out of 40: T0547.try1-opt2 206.68393 cost/residue, 825 clashes 0.13048 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 175 104 / 525 = 0.19810 0.00398 ## JiggleSubtree 2 44 28 / 387 = 0.07235 0.00567 ## JiggleSegment 5 53 37 / 458 = 0.08079 0.00502 ## OptSubtree 0 0 0 / 96 = 0.00000 0.00000 ## OptSegment 0 1 1 / 222 = 0.00450 0.00158 ## OptAllSegments 0 0 0 / 88 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 94 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 77 = 0.00000 0.00000 ## TweakPhiSubtree 27 323 197 / 752 = 0.26197 0.00646 ## TweakPhiSegment 39 433 262 / 893 = 0.29339 0.00708 ## TweakPsiSubtree 1 281 204 / 804 = 0.25373 0.00660 ## TweakPsiSegment 2 423 280 / 1037 = 0.27001 0.00842 ## TweakPsiPhiSubtree 71 303 177 / 625 = 0.28320 0.00509 ## TweakPsiPhiSegment 60 243 135 / 524 = 0.25763 0.00415 ## TweakHbondSubtree 10 208 137 / 682 = 0.20088 0.00502 ## TweakHbondSegment 9 249 141 / 667 = 0.21139 0.00550 ## TweakMultimer 154 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 99 64 / 214 = 0.29907 0.00109 ## FixOmega 2 0 0 / 81 = 0.00000 0.00000 ## Backrub 102 168 75 / 351 = 0.21368 0.00211 ## BigBackrub 65 56 29 / 242 = 0.11983 0.00216 ## OneRotamer 0 235 106 / 1023 = 0.10362 0.00539 ## ClashingRotamer 1 3 1 / 164 = 0.00610 0.00080 ## ClusteredRotamer 15 4 2 / 137 = 0.01460 0.00084 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 191 = 0.00524 0.00014 ## CloseGap 0 19 6 / 248 = 0.02419 0.00658 ## HealGap 0 12 7 / 257 = 0.02724 0.00091 ## MoveGap 0 0 0 / 86 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 197 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 88 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 187 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 88 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 434 = 0.00000 0.00000 ## CrossOver 0 0 0 / 84 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 89 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 96 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)K589 # TweakPsiSubtree removed gap before (T0547)K267 # TweakPhi removed gap before (T0547)F530 # TweakPsiPhi removed gap before (T0547)W479 # TweakPhi removed gap before (T0547)V94 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPhi removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)N96 # TweakPsiSubtree removed gap before (T0547)N24 # TweakPhi removed gap before (T0547)E308 # TweakPsiPhi removed gap before (T0547)L499 # TweakPhi removed gap before (T0547)D7 # TweakPhi removed gap before (T0547)T534 # TweakPsiPhi removed gap before (T0547)D7 # TweakPhi removed gap before (T0547)Q424 # TweakPhi removed gap before (T0547)N253 # TweakPhi removed gap before (T0547)H151 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)K414 # TweakPhi removed gap before (T0547)E406 # TweakPsiSubtree removed gap before (T0547)I350 # TweakPsiSubtree removed gap before (T0547)I319 # TweakPhi removed gap before (T0547)D312 # TweakPhi removed gap before (T0547)S287 # TweakPsiSubtree removed gap before (T0547)E138 # TweakPhi removed gap before (T0547)G610 # TweakPsiSubtree removed gap before (T0547)L116 # TweakPsiSubtree removed gap before (T0547)Y491 # TweakPhi removed gap before (T0547)Y25 # TweakPhi removed gap before (T0547)F444 # TweakPsiSubtree removed gap before (T0547)V331 # TweakPsiPhi removed gap before (T0547)K589 # TweakPhi removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)F66 # TweakPhi removed gap before (T0547)L332 # TweakPhi removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)N297 # TweakPsiPhi removed gap before (T0547)V397 # TweakPsiPhi removed gap before (T0547)L600 # TweakPhi removed gap before (T0547)L515 # TweakPsiSubtree removed gap before (T0547)E250 # generation 123: best score out of 40: T0547.try1-opt2 206.67276 cost/residue, 826 clashes 0.13025 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 175 104 / 526 = 0.19772 0.00397 ## JiggleSubtree 2 44 28 / 387 = 0.07235 0.00567 ## JiggleSegment 5 53 37 / 463 = 0.07991 0.00497 ## OptSubtree 0 0 0 / 96 = 0.00000 0.00000 ## OptSegment 0 1 1 / 222 = 0.00450 0.00158 ## OptAllSegments 0 0 0 / 88 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 94 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 77 = 0.00000 0.00000 ## TweakPhiSubtree 27 327 200 / 759 = 0.26350 0.00642 ## TweakPhiSegment 39 439 267 / 910 = 0.29341 0.00699 ## TweakPsiSubtree 1 283 206 / 812 = 0.25369 0.00654 ## TweakPsiSegment 2 427 282 / 1045 = 0.26986 0.00839 ## TweakPsiPhiSubtree 74 303 177 / 627 = 0.28230 0.00507 ## TweakPsiPhiSegment 60 245 137 / 528 = 0.25947 0.00414 ## TweakHbondSubtree 10 211 138 / 689 = 0.20029 0.00511 ## TweakHbondSegment 9 251 141 / 677 = 0.20827 0.00542 ## TweakMultimer 155 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 15 101 65 / 218 = 0.29817 0.00107 ## FixOmega 2 0 0 / 81 = 0.00000 0.00000 ## Backrub 102 170 76 / 357 = 0.21289 0.00209 ## BigBackrub 65 57 31 / 247 = 0.12551 0.00216 ## OneRotamer 0 236 106 / 1028 = 0.10311 0.00536 ## ClashingRotamer 1 3 1 / 164 = 0.00610 0.00080 ## ClusteredRotamer 15 4 2 / 138 = 0.01449 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 191 = 0.00524 0.00014 ## CloseGap 0 19 6 / 248 = 0.02419 0.00658 ## HealGap 0 12 7 / 260 = 0.02692 0.00090 ## MoveGap 0 0 0 / 86 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 197 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 89 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 190 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 88 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 435 = 0.00000 0.00000 ## CrossOver 0 0 0 / 84 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 89 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 98 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)A330 # TweakPhi removed gap before (T0547)F66 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPsiSubtree removed gap before (T0547)S280 # TweakPsiSubtree removed gap before (T0547)H233 # TweakPhi removed gap before (T0547)N603 # TweakPsiSubtree removed gap before (T0547)G544 # TweakPsiPhi removed gap before (T0547)V300 # TweakPsiSubtree removed gap before (T0547)Q424 # TweakPsiSubtree removed gap before (T0547)R467 # TweakPhi removed gap before (T0547)I417 # TweakPsiSubtree removed gap before (T0547)F453 # TweakPsiPhi removed gap before (T0547)H568 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)S202 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)G74 # TweakPhi removed gap before (T0547)L49 # TweakPhi removed gap before (T0547)E320 # TweakPhi removed gap before (T0547)N61 # TweakPhi removed gap before (T0547)G107 # TweakPsiPhi removed gap before (T0547)A170 # TweakPsiPhi removed gap before (T0547)L529 # TweakPsiPhi removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)I333 # TweakPsiPhi removed gap before (T0547)I180 # TweakPsiSubtree removed gap before (T0547)I317 # TweakPsiSubtree removed gap before (T0547)V87 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I417 # TweakPhi removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)Y366 # TweakPsiPhi removed gap before (T0547)Y440 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)L38 # TweakPhi removed gap before (T0547)V300 # TweakPsiSubtree removed gap before (T0547)L468 # TweakPhi removed gap before (T0547)E278 # TweakPsiSubtree removed gap before (T0547)G199 # TweakPsiSubtree removed gap before (T0547)F14 # TweakPhi removed gap before (T0547)L523 # TweakPsiSubtree removed gap before (T0547)K260 # TweakPhi removed gap before (T0547)I462 # TweakPsiPhi removed gap before (T0547)I34 # TweakPsiSubtree removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)L217 # TweakPhi removed gap before (T0547)Q56 # TweakPsiPhi removed gap before (T0547)A553 # TweakPsiPhi removed gap before (T0547)I369 # generation 124: best score out of 40: T0547.try1-opt2 206.64938 cost/residue, 823 clashes 0.13027 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 177 104 / 533 = 0.19512 0.00392 ## JiggleSubtree 2 44 28 / 388 = 0.07216 0.00566 ## JiggleSegment 5 53 37 / 465 = 0.07957 0.00494 ## OptSubtree 0 0 0 / 96 = 0.00000 0.00000 ## OptSegment 0 1 1 / 223 = 0.00448 0.00157 ## OptAllSegments 0 0 0 / 88 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 94 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 77 = 0.00000 0.00000 ## TweakPhiSubtree 27 331 201 / 768 = 0.26172 0.00635 ## TweakPhiSegment 39 440 267 / 917 = 0.29117 0.00694 ## TweakPsiSubtree 1 288 209 / 823 = 0.25395 0.00649 ## TweakPsiSegment 2 430 282 / 1058 = 0.26654 0.00829 ## TweakPsiPhiSubtree 74 303 178 / 632 = 0.28165 0.00504 ## TweakPsiPhiSegment 61 249 138 / 536 = 0.25746 0.00412 ## TweakHbondSubtree 10 215 141 / 697 = 0.20230 0.00507 ## TweakHbondSegment 9 251 141 / 679 = 0.20766 0.00541 ## TweakMultimer 155 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 15 101 65 / 219 = 0.29680 0.00107 ## FixOmega 2 0 0 / 81 = 0.00000 0.00000 ## Backrub 104 171 77 / 362 = 0.21271 0.00208 ## BigBackrub 65 57 31 / 250 = 0.12400 0.00213 ## OneRotamer 0 236 106 / 1031 = 0.10281 0.00534 ## ClashingRotamer 1 3 1 / 166 = 0.00602 0.00079 ## ClusteredRotamer 15 4 2 / 138 = 0.01449 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 192 = 0.00521 0.00014 ## CloseGap 0 19 6 / 250 = 0.02400 0.00653 ## HealGap 0 12 7 / 262 = 0.02672 0.00090 ## MoveGap 0 0 0 / 86 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 198 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 90 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 190 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 89 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 438 = 0.00000 0.00000 ## CrossOver 0 0 0 / 85 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 89 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 98 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L271 # TweakPsiSubtree removed gap before (T0547)A476 # TweakPsiSubtree removed gap before (T0547)K304 # TweakPhi removed gap before (T0547)G395 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPhi removed gap before (T0547)G19 # TweakPsiPhi removed gap before (T0547)K353 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPsiSubtree removed gap before (T0547)E164 # TweakPsiSubtree removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)D103 # TweakPhi removed gap before (T0547)S445 # TweakPsiSubtree removed gap before (T0547)F73 # TweakPsiPhi removed gap before (T0547)K415 # TweakPsiSubtree removed gap before (T0547)I417 # TweakPhi removed gap before (T0547)K260 # TweakPsiSubtree removed gap before (T0547)I302 # TweakPhi removed gap before (T0547)K367 # TweakPsiSubtree removed gap before (T0547)K414 # TweakPsiSubtree removed gap before (T0547)I540 # TweakPsiSubtree removed gap before (T0547)T409 # TweakPsiPhi removed gap before (T0547)A553 # TweakPhi removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)L378 # TweakPsiPhi removed gap before (T0547)V98 # TweakPsiSubtree removed gap before (T0547)Y122 # TweakPhi removed gap before (T0547)T409 # TweakPhi removed gap before (T0547)D33 # TweakPsiPhi removed gap before (T0547)A147 # TweakPsiSubtree removed gap before (T0547)E595 # TweakPsiPhi removed gap before (T0547)L116 # TweakPhi removed gap before (T0547)H53 # TweakPsiSubtree removed gap before (T0547)G133 # TweakPhi removed gap before (T0547)E595 # TweakPhi removed gap before (T0547)Y122 # TweakPhi removed gap before (T0547)K95 # TweakPsiPhi removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)P29 # TweakPhi removed gap before (T0547)S372 # TweakPhi removed gap before (T0547)L583 # TweakPsiPhi removed gap before (T0547)I570 # TweakPhi removed gap before (T0547)Q281 # TweakPhi removed gap before (T0547)E546 # TweakPsiSubtree removed gap before (T0547)F51 # TweakPsiSubtree removed gap before (T0547)D484 # TweakPsiPhi removed gap before (T0547)F232 # TweakPhi removed gap before (T0547)S280 # TweakPsiSubtree removed gap before (T0547)L375 # TweakPsiPhi removed gap before (T0547)N404 # TweakPsiPhi removed gap before (T0547)F204 # TweakPsiSubtree removed gap before (T0547)N443 # TweakPhi removed gap before (T0547)L155 # TweakPhi removed gap before (T0547)K506 # TweakPhi removed gap before (T0547)L411 # TweakPsiSubtree removed gap before (T0547)D586 # generation 125: best score out of 40: T0547.try1-opt2 206.51505 cost/residue, 824 clashes 0.13035 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 178 105 / 537 = 0.19553 0.00394 ## JiggleSubtree 2 44 28 / 388 = 0.07216 0.00566 ## JiggleSegment 5 53 37 / 469 = 0.07889 0.00490 ## OptSubtree 0 0 0 / 97 = 0.00000 0.00000 ## OptSegment 0 1 1 / 223 = 0.00448 0.00157 ## OptAllSegments 0 0 0 / 90 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 94 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 77 = 0.00000 0.00000 ## TweakPhiSubtree 28 336 204 / 782 = 0.26087 0.00631 ## TweakPhiSegment 39 443 269 / 925 = 0.29081 0.00692 ## TweakPsiSubtree 1 292 210 / 834 = 0.25180 0.00644 ## TweakPsiSegment 2 434 286 / 1071 = 0.26704 0.00838 ## TweakPsiPhiSubtree 75 303 178 / 638 = 0.27900 0.00499 ## TweakPsiPhiSegment 62 253 142 / 543 = 0.26151 0.00411 ## TweakHbondSubtree 10 215 141 / 704 = 0.20028 0.00502 ## TweakHbondSegment 9 253 141 / 686 = 0.20554 0.00535 ## TweakMultimer 160 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 15 101 65 / 220 = 0.29545 0.00106 ## FixOmega 2 0 0 / 82 = 0.00000 0.00000 ## Backrub 104 171 77 / 364 = 0.21154 0.00207 ## BigBackrub 65 58 32 / 252 = 0.12698 0.00214 ## OneRotamer 0 236 106 / 1035 = 0.10242 0.00532 ## ClashingRotamer 1 3 1 / 167 = 0.00599 0.00078 ## ClusteredRotamer 15 4 2 / 138 = 0.01449 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 193 = 0.00518 0.00014 ## CloseGap 0 19 6 / 250 = 0.02400 0.00653 ## HealGap 0 12 7 / 263 = 0.02662 0.00089 ## MoveGap 0 0 0 / 87 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 199 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 90 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 190 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 89 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 439 = 0.00000 0.00000 ## CrossOver 0 0 0 / 85 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 89 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 98 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)D466 # TweakPhi removed gap before (T0547)V442 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)A405 # TweakPsiSubtree removed gap before (T0547)S280 # TweakPhi removed gap before (T0547)K68 # TweakPsiSubtree removed gap before (T0547)S280 # TweakPsiPhi removed gap before (T0547)G272 # TweakPhi removed gap before (T0547)N24 # TweakPsiSubtree removed gap before (T0547)I306 # TweakPhi removed gap before (T0547)E470 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)E158 # TweakPsiSubtree removed gap before (T0547)M229 # TweakPsiPhi removed gap before (T0547)D422 # TweakPsiSubtree removed gap before (T0547)P533 # TweakPhi removed gap before (T0547)K71 # TweakPhi removed gap before (T0547)I238 # TweakPsiSubtree removed gap before (T0547)W9 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)T473 # TweakPhi removed gap before (T0547)L292 # TweakPsiSubtree removed gap before (T0547)Y255 # TweakPhi removed gap before (T0547)E60 # TweakPhi removed gap before (T0547)K370 # TweakPhi removed gap before (T0547)K352 # TweakPsiPhi removed gap before (T0547)E314 # TweakPhi removed gap before (T0547)N373 # TweakPsiPhi removed gap before (T0547)Y25 # TweakPsiPhi removed gap before (T0547)H151 # TweakPsiPhi removed gap before (T0547)I145 # TweakPhi removed gap before (T0547)L275 # TweakPsiSubtree removed gap before (T0547)I350 # TweakPsiSubtree removed gap before (T0547)G111 # TweakPhi removed gap before (T0547)V277 # TweakPsiSubtree removed gap before (T0547)G205 # TweakPhi removed gap before (T0547)K27 # TweakPhi removed gap before (T0547)A374 # TweakPsiSubtree removed gap before (T0547)N201 # TweakPsiPhi removed gap before (T0547)E338 # TweakPhi removed gap before (T0547)D383 # TweakPhi removed gap before (T0547)G64 # TweakPsiSubtree removed gap before (T0547)G395 # TweakPsiSubtree removed gap before (T0547)Y440 # TweakPsiPhi removed gap before (T0547)L583 # TweakPhi removed gap before (T0547)L465 # TweakPsiPhi removed gap before (T0547)N13 # TweakPsiSubtree removed gap before (T0547)V21 # TweakPsiPhi removed gap before (T0547)A119 # TweakPsiPhi removed gap before (T0547)L155 # TweakPhi removed gap before (T0547)W454 # TweakPhi removed gap before (T0547)S445 # TweakPhi removed gap before (T0547)L420 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPsiSubtree removed gap before (T0547)I350 # generation 126: best score out of 40: T0547.try1-opt2 206.49011 cost/residue, 824 clashes 0.13033 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 178 105 / 539 = 0.19481 0.00392 ## JiggleSubtree 2 44 28 / 389 = 0.07198 0.00565 ## JiggleSegment 5 53 37 / 470 = 0.07872 0.00489 ## OptSubtree 0 0 0 / 97 = 0.00000 0.00000 ## OptSegment 0 1 1 / 223 = 0.00448 0.00157 ## OptAllSegments 0 0 0 / 90 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 95 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 77 = 0.00000 0.00000 ## TweakPhiSubtree 30 342 205 / 798 = 0.25689 0.00619 ## TweakPhiSegment 39 444 270 / 933 = 0.28939 0.00686 ## TweakPsiSubtree 1 293 210 / 841 = 0.24970 0.00638 ## TweakPsiSegment 2 438 289 / 1084 = 0.26661 0.00840 ## TweakPsiPhiSubtree 75 304 179 / 640 = 0.27969 0.00500 ## TweakPsiPhiSegment 63 258 145 / 555 = 0.26126 0.00412 ## TweakHbondSubtree 10 217 142 / 710 = 0.20000 0.00501 ## TweakHbondSegment 9 257 141 / 701 = 0.20114 0.00524 ## TweakMultimer 161 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 15 103 66 / 222 = 0.29730 0.00108 ## FixOmega 2 0 0 / 82 = 0.00000 0.00000 ## Backrub 104 171 77 / 365 = 0.21096 0.00207 ## BigBackrub 66 60 34 / 257 = 0.13230 0.00224 ## OneRotamer 0 238 106 / 1038 = 0.10212 0.00531 ## ClashingRotamer 1 3 1 / 167 = 0.00599 0.00078 ## ClusteredRotamer 15 4 2 / 138 = 0.01449 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 196 = 0.00510 0.00013 ## CloseGap 0 19 6 / 251 = 0.02390 0.00650 ## HealGap 0 12 7 / 263 = 0.02662 0.00089 ## MoveGap 0 0 0 / 87 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 199 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 90 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 191 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 89 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 439 = 0.00000 0.00000 ## CrossOver 0 0 0 / 85 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 89 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 98 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)Q424 # TweakPsiSubtree removed gap before (T0547)P472 # TweakPhi removed gap before (T0547)M2 # TweakPhi removed gap before (T0547)A263 # TweakPsiPhi removed gap before (T0547)R259 # TweakPsiSubtree removed gap before (T0547)I550 # TweakPhi removed gap before (T0547)G19 # TweakPsiSubtree removed gap before (T0547)L332 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Q588 # TweakPsiPhi removed gap before (T0547)F318 # TweakPhi removed gap before (T0547)K113 # TweakPsiPhi removed gap before (T0547)Y545 # TweakPsiSubtree removed gap before (T0547)L85 # TweakPsiSubtree removed gap before (T0547)I369 # TweakPsiSubtree removed gap before (T0547)I540 # TweakPhi removed gap before (T0547)R70 # TweakPsiSubtree removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)E250 # TweakPsiPhi removed gap before (T0547)F513 # TweakPhi removed gap before (T0547)K17 # TweakPhi removed gap before (T0547)L499 # TweakPsiSubtree removed gap before (T0547)L266 # TweakPsiSubtree removed gap before (T0547)H187 # TweakPhi removed gap before (T0547)D380 # TweakPhi removed gap before (T0547)C483 # TweakPhi removed gap before (T0547)S197 # TweakPhi removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)C22 # TweakPhi removed gap before (T0547)D168 # TweakPhi removed gap before (T0547)A147 # TweakPsiPhi removed gap before (T0547)Q237 # TweakPsiPhi removed gap before (T0547)N284 # TweakPsiPhi removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)L163 # TweakPhi removed gap before (T0547)V516 # TweakPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)Q458 # TweakPhi removed gap before (T0547)L430 # TweakPhi removed gap before (T0547)V331 # TweakPsiPhi removed gap before (T0547)H591 # TweakPhi removed gap before (T0547)L163 # TweakPhi removed gap before (T0547)E278 # TweakPsiSubtree removed gap before (T0547)I388 # TweakPsiSubtree removed gap before (T0547)P128 # TweakPsiPhi removed gap before (T0547)L54 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V215 # TweakPsiSubtree removed gap before (T0547)Y509 # TweakPsiPhi removed gap before (T0547)E60 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)L266 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L515 # TweakPsiSubtree removed gap before (T0547)E320 # generation 127: best score out of 40: T0547.try1-opt2 206.48483 cost/residue, 824 clashes 0.13032 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 181 108 / 544 = 0.19853 0.00390 ## JiggleSubtree 2 44 28 / 390 = 0.07179 0.00563 ## JiggleSegment 5 53 37 / 472 = 0.07839 0.00487 ## OptSubtree 0 0 0 / 97 = 0.00000 0.00000 ## OptSegment 0 1 1 / 224 = 0.00446 0.00156 ## OptAllSegments 0 0 0 / 90 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 95 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 78 = 0.00000 0.00000 ## TweakPhiSubtree 31 345 210 / 812 = 0.25862 0.00618 ## TweakPhiSegment 39 448 273 / 943 = 0.28950 0.00679 ## TweakPsiSubtree 1 294 210 / 850 = 0.24706 0.00632 ## TweakPsiSegment 2 445 292 / 1100 = 0.26545 0.00837 ## TweakPsiPhiSubtree 75 308 182 / 648 = 0.28086 0.00497 ## TweakPsiPhiSegment 63 259 145 / 557 = 0.26032 0.00410 ## TweakHbondSubtree 11 219 142 / 715 = 0.19860 0.00498 ## TweakHbondSegment 9 258 141 / 702 = 0.20085 0.00523 ## TweakMultimer 162 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 16 103 66 / 223 = 0.29596 0.00108 ## FixOmega 2 0 0 / 82 = 0.00000 0.00000 ## Backrub 106 174 78 / 369 = 0.21138 0.00205 ## BigBackrub 68 62 34 / 263 = 0.12928 0.00219 ## OneRotamer 0 239 107 / 1043 = 0.10259 0.00531 ## ClashingRotamer 1 3 1 / 169 = 0.00592 0.00077 ## ClusteredRotamer 15 4 2 / 138 = 0.01449 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 197 = 0.00508 0.00013 ## CloseGap 0 19 6 / 251 = 0.02390 0.00650 ## HealGap 0 12 7 / 263 = 0.02662 0.00089 ## MoveGap 0 0 0 / 87 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 199 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 90 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 192 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 89 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 440 = 0.00000 0.00000 ## CrossOver 0 0 0 / 85 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 13 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 91 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 99 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)K357 # TweakPsiPhi removed gap before (T0547)L456 # TweakPsiPhi removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)I169 # TweakPsiPhi removed gap before (T0547)Y491 # TweakPsiSubtree removed gap before (T0547)K57 # TweakPhi removed gap before (T0547)K506 # TweakPsiSubtree removed gap before (T0547)H242 # TweakPsiPhi removed gap before (T0547)K493 # TweakPsiSubtree removed gap before (T0547)S202 # TweakPhi removed gap before (T0547)R467 # TweakPhi removed gap before (T0547)G78 # TweakPsiSubtree removed gap before (T0547)V436 # TweakPsiPhi removed gap before (T0547)F530 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)V215 # TweakPsiSubtree removed gap before (T0547)G273 # TweakPhi removed gap before (T0547)Q554 # TweakPsiPhi removed gap before (T0547)I169 # TweakPsiSubtree removed gap before (T0547)C22 # TweakPhi removed gap before (T0547)N13 # TweakPhi removed gap before (T0547)I319 # TweakPhi removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)G594 # TweakPsiPhi removed gap before (T0547)V87 # TweakPhi removed gap before (T0547)E457 # TweakPhi removed gap before (T0547)D486 # TweakPsiPhi removed gap before (T0547)I34 # TweakPsiSubtree removed gap before (T0547)L211 # TweakPhi removed gap before (T0547)L182 # TweakPsiSubtree removed gap before (T0547)N270 # TweakPsiPhi removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPsiPhi removed gap before (T0547)K68 # TweakPsiPhi removed gap before (T0547)E220 # TweakPhi removed gap before (T0547)D393 # TweakPsiPhi removed gap before (T0547)V131 # TweakPsiSubtree removed gap before (T0547)E308 # TweakPsiPhi removed gap before (T0547)D383 # TweakPsiPhi removed gap before (T0547)E172 # TweakPsiSubtree removed gap before (T0547)P496 # TweakPsiPhi removed gap before (T0547)D3 # TweakPsiSubtree removed gap before (T0547)F444 # TweakPhi removed gap before (T0547)M2 # TweakPsiSubtree removed gap before (T0547)E546 # TweakPsiSubtree removed gap before (T0547)E435 # TweakPhi removed gap before (T0547)L292 # TweakPhi removed gap before (T0547)G544 # TweakPhi removed gap before (T0547)G181 # generation 128: best score out of 40: T0547.try1-opt2 206.41724 cost/residue, 824 clashes 0.12972 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 182 108 / 546 = 0.19780 0.00389 ## JiggleSubtree 2 44 28 / 391 = 0.07161 0.00562 ## JiggleSegment 5 54 38 / 476 = 0.07983 0.00485 ## OptSubtree 0 0 0 / 97 = 0.00000 0.00000 ## OptSegment 0 1 1 / 226 = 0.00442 0.00155 ## OptAllSegments 0 0 0 / 90 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 96 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 78 = 0.00000 0.00000 ## TweakPhiSubtree 31 349 212 / 826 = 0.25666 0.00618 ## TweakPhiSegment 39 449 275 / 948 = 0.29008 0.00677 ## TweakPsiSubtree 1 294 210 / 854 = 0.24590 0.00629 ## TweakPsiSegment 2 451 296 / 1117 = 0.26500 0.00832 ## TweakPsiPhiSubtree 75 311 183 / 657 = 0.27854 0.00491 ## TweakPsiPhiSegment 65 261 145 / 563 = 0.25755 0.00406 ## TweakHbondSubtree 11 220 143 / 724 = 0.19751 0.00492 ## TweakHbondSegment 9 259 142 / 708 = 0.20056 0.00520 ## TweakMultimer 163 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 16 105 66 / 226 = 0.29204 0.00106 ## FixOmega 2 0 0 / 82 = 0.00000 0.00000 ## Backrub 106 174 78 / 370 = 0.21081 0.00205 ## BigBackrub 68 64 35 / 270 = 0.12963 0.00224 ## OneRotamer 0 239 107 / 1049 = 0.10200 0.00528 ## ClashingRotamer 1 3 1 / 169 = 0.00592 0.00077 ## ClusteredRotamer 15 4 2 / 138 = 0.01449 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 197 = 0.00508 0.00013 ## CloseGap 0 19 6 / 251 = 0.02390 0.00650 ## HealGap 0 12 7 / 263 = 0.02662 0.00089 ## MoveGap 0 0 0 / 88 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 199 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 90 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 192 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 89 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 441 = 0.00000 0.00000 ## CrossOver 0 0 0 / 86 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 13 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 91 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 99 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)Q309 # TweakPsiPhi removed gap before (T0547)Q56 # TweakPhi removed gap before (T0547)K27 # TweakPhi removed gap before (T0547)E225 # TweakPsiSubtree removed gap before (T0547)E138 # TweakPhi removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)D466 # TweakPhi removed gap before (T0547)L275 # TweakPsiSubtree removed gap before (T0547)K607 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)L303 # TweakPhi removed gap before (T0547)G252 # TweakPhi removed gap before (T0547)N179 # TweakPsiPhi removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)N152 # TweakPhi removed gap before (T0547)I333 # TweakPsiPhi removed gap before (T0547)I129 # TweakPhi removed gap before (T0547)L465 # TweakPsiPhi removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)S202 # TweakPhi removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)L511 # TweakPsiSubtree removed gap before (T0547)L419 # TweakPsiSubtree removed gap before (T0547)D484 # TweakPsiSubtree removed gap before (T0547)R70 # TweakPhi removed gap before (T0547)L351 # TweakPhi removed gap before (T0547)L155 # TweakPsiSubtree removed gap before (T0547)R439 # TweakPsiSubtree removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPhi removed gap before (T0547)A165 # TweakPhi removed gap before (T0547)G78 # TweakPhi removed gap before (T0547)E172 # TweakPsiPhi removed gap before (T0547)V184 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I432 # TweakPhi removed gap before (T0547)K177 # TweakPsiSubtree removed gap before (T0547)P46 # TweakPhi removed gap before (T0547)I157 # TweakPhi removed gap before (T0547)G77 # TweakPsiPhi removed gap before (T0547)H187 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)P176 # TweakPhi removed gap before (T0547)D562 # TweakPhi removed gap before (T0547)G42 # TweakPsiSubtree removed gap before (T0547)E257 # generation 129: best score out of 40: T0547.try1-opt2 206.40796 cost/residue, 823 clashes 0.12976 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 182 108 / 549 = 0.19672 0.00386 ## JiggleSubtree 2 44 28 / 391 = 0.07161 0.00562 ## JiggleSegment 5 54 38 / 480 = 0.07917 0.00481 ## OptSubtree 0 0 0 / 97 = 0.00000 0.00000 ## OptSegment 0 1 1 / 226 = 0.00442 0.00155 ## OptAllSegments 0 0 0 / 90 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 97 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 78 = 0.00000 0.00000 ## TweakPhiSubtree 32 354 214 / 840 = 0.25476 0.00610 ## TweakPhiSegment 39 451 276 / 956 = 0.28870 0.00673 ## TweakPsiSubtree 1 295 211 / 859 = 0.24563 0.00628 ## TweakPsiSegment 2 454 300 / 1130 = 0.26549 0.00827 ## TweakPsiPhiSubtree 75 313 184 / 660 = 0.27879 0.00493 ## TweakPsiPhiSegment 66 262 146 / 568 = 0.25704 0.00407 ## TweakHbondSubtree 11 224 145 / 733 = 0.19782 0.00486 ## TweakHbondSegment 9 262 143 / 716 = 0.19972 0.00515 ## TweakMultimer 163 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 16 106 66 / 228 = 0.28947 0.00106 ## FixOmega 2 0 0 / 84 = 0.00000 0.00000 ## Backrub 107 176 79 / 373 = 0.21180 0.00208 ## BigBackrub 69 64 36 / 279 = 0.12903 0.00221 ## OneRotamer 0 239 107 / 1054 = 0.10152 0.00525 ## ClashingRotamer 1 3 1 / 170 = 0.00588 0.00077 ## ClusteredRotamer 15 4 2 / 138 = 0.01449 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 197 = 0.00508 0.00013 ## CloseGap 0 19 6 / 251 = 0.02390 0.00650 ## HealGap 0 12 7 / 264 = 0.02652 0.00089 ## MoveGap 0 0 0 / 88 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 200 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 90 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 193 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 90 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 441 = 0.00000 0.00000 ## CrossOver 0 0 0 / 86 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 13 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 92 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 99 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)F144 # TweakPhi removed gap before (T0547)V94 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)V300 # TweakPhi removed gap before (T0547)I157 # TweakPhi removed gap before (T0547)E225 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)I302 # TweakPsiSubtree removed gap before (T0547)D33 # TweakPsiSubtree removed gap before (T0547)K171 # TweakPsiPhi removed gap before (T0547)K36 # TweakPsiSubtree removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)I567 # TweakPsiPhi removed gap before (T0547)D422 # TweakPhi removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)D602 # TweakPhi removed gap before (T0547)F599 # TweakPsiPhi removed gap before (T0547)I212 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)L446 # TweakPhi removed gap before (T0547)Y90 # TweakPsiSubtree removed gap before (T0547)A119 # TweakPhi removed gap before (T0547)N65 # TweakPsiPhi removed gap before (T0547)F66 # TweakPsiPhi removed gap before (T0547)H151 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)L389 # TweakPhi removed gap before (T0547)K367 # TweakPhi removed gap before (T0547)K99 # TweakPsiSubtree removed gap before (T0547)D316 # TweakPhi removed gap before (T0547)L465 # TweakPsiPhi removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)K68 # TweakPsiSubtree removed gap before (T0547)K76 # TweakPsiPhi removed gap before (T0547)E172 # TweakPsiSubtree removed gap before (T0547)L385 # generation 130: best score out of 40: T0547.try1-opt2 206.36229 cost/residue, 820 clashes 0.12985 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 185 111 / 554 = 0.20036 0.00386 ## JiggleSubtree 2 44 28 / 392 = 0.07143 0.00560 ## JiggleSegment 5 54 38 / 484 = 0.07851 0.00477 ## OptSubtree 0 0 0 / 97 = 0.00000 0.00000 ## OptSegment 0 1 1 / 230 = 0.00435 0.00152 ## OptAllSegments 0 0 0 / 90 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 97 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 79 = 0.00000 0.00000 ## TweakPhiSubtree 33 359 215 / 850 = 0.25294 0.00612 ## TweakPhiSegment 39 454 278 / 960 = 0.28958 0.00672 ## TweakPsiSubtree 1 297 212 / 864 = 0.24537 0.00626 ## TweakPsiSegment 2 458 303 / 1145 = 0.26463 0.00818 ## TweakPsiPhiSubtree 76 315 185 / 667 = 0.27736 0.00489 ## TweakPsiPhiSegment 66 262 146 / 571 = 0.25569 0.00404 ## TweakHbondSubtree 11 225 146 / 740 = 0.19730 0.00482 ## TweakHbondSegment 9 264 145 / 721 = 0.20111 0.00520 ## TweakMultimer 168 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 16 107 66 / 230 = 0.28696 0.00105 ## FixOmega 2 0 0 / 84 = 0.00000 0.00000 ## Backrub 109 181 81 / 380 = 0.21316 0.00207 ## BigBackrub 71 64 37 / 284 = 0.13028 0.00219 ## OneRotamer 0 240 107 / 1061 = 0.10085 0.00522 ## ClashingRotamer 1 3 1 / 170 = 0.00588 0.00077 ## ClusteredRotamer 15 4 2 / 139 = 0.01439 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 197 = 0.00508 0.00013 ## CloseGap 0 19 6 / 252 = 0.02381 0.00648 ## HealGap 0 12 7 / 264 = 0.02652 0.00089 ## MoveGap 0 0 0 / 88 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 200 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 92 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 193 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 90 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 444 = 0.00000 0.00000 ## CrossOver 0 0 0 / 86 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 14 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 92 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 99 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPhi removed gap before (T0547)A127 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)D380 # TweakPhi removed gap before (T0547)G455 # TweakPhi removed gap before (T0547)I478 # TweakPsiPhi removed gap before (T0547)I145 # TweakPsiSubtree removed gap before (T0547)I145 # TweakPsiSubtree removed gap before (T0547)D312 # TweakPsiPhi removed gap before (T0547)E148 # TweakPsiPhi removed gap before (T0547)H233 # TweakPhi removed gap before (T0547)V547 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPsiPhi removed gap before (T0547)T531 # TweakPsiSubtree removed gap before (T0547)K310 # TweakPsiPhi removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPsiSubtree removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)P176 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)N105 # TweakPsiSubtree removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)N152 # TweakPhi removed gap before (T0547)L271 # TweakPsiSubtree removed gap before (T0547)E343 # TweakPsiSubtree removed gap before (T0547)Q424 # TweakPsiPhi removed gap before (T0547)L234 # TweakPsiSubtree removed gap before (T0547)N249 # TweakPsiPhi removed gap before (T0547)K20 # TweakPsiPhi removed gap before (T0547)E158 # TweakPhi removed gap before (T0547)L430 # TweakPhi removed gap before (T0547)T209 # TweakPsiPhi removed gap before (T0547)L399 # TweakPhi removed gap before (T0547)L275 # TweakPsiSubtree removed gap before (T0547)I238 # TweakPsiSubtree removed gap before (T0547)F498 # TweakPhi removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)R70 # TweakPhi removed gap before (T0547)E376 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPhi removed gap before (T0547)I609 # TweakPsiSubtree removed gap before (T0547)A251 # TweakPhi removed gap before (T0547)N404 # TweakPhi removed gap before (T0547)T239 # TweakPhi removed gap before (T0547)I570 # TweakPsiPhi removed gap before (T0547)F134 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPsiSubtree removed gap before (T0547)L48 # TweakPsiSubtree removed gap before (T0547)E314 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)D380 # TweakPsiSubtree removed gap before (T0547)S112 # TweakPsiPhi removed gap before (T0547)L411 # TweakPsiSubtree removed gap before (T0547)Y545 # generation 131: best score out of 40: T0547.try1-opt2 206.34462 cost/residue, 820 clashes 0.12982 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 185 111 / 559 = 0.19857 0.00382 ## JiggleSubtree 2 44 28 / 392 = 0.07143 0.00560 ## JiggleSegment 5 54 38 / 484 = 0.07851 0.00477 ## OptSubtree 0 0 0 / 98 = 0.00000 0.00000 ## OptSegment 0 1 1 / 230 = 0.00435 0.00152 ## OptAllSegments 0 0 0 / 90 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 97 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 80 = 0.00000 0.00000 ## TweakPhiSubtree 33 361 217 / 856 = 0.25350 0.00609 ## TweakPhiSegment 39 459 279 / 969 = 0.28793 0.00666 ## TweakPsiSubtree 1 299 213 / 875 = 0.24343 0.00618 ## TweakPsiSegment 2 463 306 / 1162 = 0.26334 0.00810 ## TweakPsiPhiSubtree 76 319 188 / 675 = 0.27852 0.00487 ## TweakPsiPhiSegment 67 263 146 / 575 = 0.25391 0.00402 ## TweakHbondSubtree 11 226 146 / 748 = 0.19519 0.00477 ## TweakHbondSegment 10 266 146 / 724 = 0.20166 0.00518 ## TweakMultimer 169 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 17 108 67 / 233 = 0.28755 0.00104 ## FixOmega 2 0 0 / 84 = 0.00000 0.00000 ## Backrub 110 182 81 / 383 = 0.21149 0.00205 ## BigBackrub 72 64 38 / 294 = 0.12925 0.00214 ## OneRotamer 0 240 107 / 1066 = 0.10038 0.00519 ## ClashingRotamer 1 3 1 / 170 = 0.00588 0.00077 ## ClusteredRotamer 15 4 2 / 139 = 0.01439 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 199 = 0.00503 0.00013 ## CloseGap 0 19 6 / 252 = 0.02381 0.00648 ## HealGap 0 12 7 / 264 = 0.02652 0.00089 ## MoveGap 0 0 0 / 89 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 201 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 92 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 193 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 90 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 446 = 0.00000 0.00000 ## CrossOver 0 0 0 / 86 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 14 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 92 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 99 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)F93 # TweakPsiPhi removed gap before (T0547)G133 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPhi removed gap before (T0547)N305 # TweakPhi removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)A119 # TweakPsiSubtree removed gap before (T0547)F498 # TweakPhi removed gap before (T0547)L418 # TweakPhi removed gap before (T0547)S188 # TweakPsiSubtree removed gap before (T0547)E595 # TweakPsiPhi removed gap before (T0547)E172 # TweakPsiPhi removed gap before (T0547)N528 # TweakPsiSubtree removed gap before (T0547)A374 # TweakPsiPhi removed gap before (T0547)A165 # TweakPsiPhi removed gap before (T0547)D383 # TweakPhi removed gap before (T0547)K286 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)D480 # TweakPsiSubtree removed gap before (T0547)P461 # TweakPhi removed gap before (T0547)G205 # TweakPhi removed gap before (T0547)L420 # TweakPsiSubtree removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)G594 # TweakPhi removed gap before (T0547)N152 # TweakPsiSubtree removed gap before (T0547)L574 # TweakPsiPhi removed gap before (T0547)A251 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPsiPhi removed gap before (T0547)V516 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K587 # TweakPhi removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)F453 # TweakPhi removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)F93 # TweakPsiSubtree removed gap before (T0547)E457 # TweakPsiSubtree removed gap before (T0547)S539 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)H379 # TweakPhi removed gap before (T0547)F340 # TweakPsiPhi removed gap before (T0547)I6 # generation 132: best score out of 40: T0547.try1-opt2 206.34462 cost/residue, 820 clashes 0.12982 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 187 112 / 567 = 0.19753 0.00380 ## JiggleSubtree 2 44 28 / 392 = 0.07143 0.00560 ## JiggleSegment 5 55 38 / 487 = 0.07803 0.00474 ## OptSubtree 0 0 0 / 98 = 0.00000 0.00000 ## OptSegment 0 1 1 / 231 = 0.00433 0.00152 ## OptAllSegments 0 0 0 / 90 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 97 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 81 = 0.00000 0.00000 ## TweakPhiSubtree 34 364 218 / 865 = 0.25202 0.00603 ## TweakPhiSegment 40 463 283 / 977 = 0.28966 0.00663 ## TweakPsiSubtree 1 301 214 / 881 = 0.24291 0.00615 ## TweakPsiSegment 2 467 307 / 1174 = 0.26150 0.00802 ## TweakPsiPhiSubtree 76 322 192 / 681 = 0.28194 0.00487 ## TweakPsiPhiSegment 67 266 147 / 578 = 0.25433 0.00401 ## TweakHbondSubtree 11 228 147 / 754 = 0.19496 0.00474 ## TweakHbondSegment 10 270 149 / 737 = 0.20217 0.00516 ## TweakMultimer 170 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 17 109 68 / 234 = 0.29060 0.00104 ## FixOmega 2 0 0 / 84 = 0.00000 0.00000 ## Backrub 111 182 81 / 388 = 0.20876 0.00203 ## BigBackrub 73 64 38 / 298 = 0.12752 0.00211 ## OneRotamer 0 241 107 / 1072 = 0.09981 0.00516 ## ClashingRotamer 1 3 1 / 171 = 0.00585 0.00076 ## ClusteredRotamer 15 4 2 / 139 = 0.01439 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 199 = 0.00503 0.00013 ## CloseGap 0 19 6 / 253 = 0.02372 0.00645 ## HealGap 0 12 7 / 266 = 0.02632 0.00088 ## MoveGap 0 0 0 / 89 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 203 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 92 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 193 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 90 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 448 = 0.00000 0.00000 ## CrossOver 0 0 0 / 86 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 14 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 92 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 99 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)V131 # TweakPhi removed gap before (T0547)D41 # TweakPsiPhi removed gap before (T0547)G455 # TweakPsiSubtree removed gap before (T0547)G252 # TweakPhi removed gap before (T0547)W479 # TweakPsiSubtree removed gap before (T0547)F392 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)S579 # TweakPsiSubtree removed gap before (T0547)G42 # TweakPsiSubtree removed gap before (T0547)A251 # TweakPsiPhi removed gap before (T0547)V191 # TweakPhi removed gap before (T0547)C483 # TweakPsiPhi removed gap before (T0547)Y366 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)L420 # TweakPhi removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)L411 # TweakPsiPhi removed gap before (T0547)I212 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)S555 # TweakPsiSubtree removed gap before (T0547)A214 # TweakPsiSubtree removed gap before (T0547)S112 # TweakPsiSubtree removed gap before (T0547)N425 # TweakPsiPhi removed gap before (T0547)V522 # TweakPsiSubtree removed gap before (T0547)L48 # TweakPsiPhi removed gap before (T0547)K260 # TweakPhi removed gap before (T0547)R39 # TweakPhi removed gap before (T0547)R70 # TweakPhi removed gap before (T0547)T473 # TweakPhi removed gap before (T0547)K370 # TweakPhi removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)V336 # TweakPhi removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)E220 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)E343 # TweakPhi removed gap before (T0547)G77 # TweakPhi removed gap before (T0547)N18 # TweakPsiSubtree removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)I153 # TweakPhi removed gap before (T0547)S321 # TweakPsiSubtree removed gap before (T0547)N585 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K304 # TweakPsiPhi removed gap before (T0547)Q309 # TweakPsiSubtree removed gap before (T0547)D486 # TweakPsiPhi removed gap before (T0547)I241 # TweakPsiSubtree removed gap before (T0547)E164 # generation 133: best score out of 40: T0547.try1-opt2 206.19334 cost/residue, 821 clashes 0.12901 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 190 115 / 573 = 0.20070 0.00391 ## JiggleSubtree 2 44 28 / 393 = 0.07125 0.00559 ## JiggleSegment 5 55 38 / 490 = 0.07755 0.00471 ## OptSubtree 0 0 0 / 98 = 0.00000 0.00000 ## OptSegment 0 1 1 / 231 = 0.00433 0.00152 ## OptAllSegments 0 0 0 / 90 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 98 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 81 = 0.00000 0.00000 ## TweakPhiSubtree 35 367 219 / 871 = 0.25144 0.00601 ## TweakPhiSegment 41 466 284 / 990 = 0.28687 0.00657 ## TweakPsiSubtree 1 303 216 / 888 = 0.24324 0.00630 ## TweakPsiSegment 2 472 308 / 1188 = 0.25926 0.00799 ## TweakPsiPhiSubtree 76 323 193 / 685 = 0.28175 0.00492 ## TweakPsiPhiSegment 69 267 147 / 584 = 0.25171 0.00397 ## TweakHbondSubtree 11 230 149 / 760 = 0.19605 0.00476 ## TweakHbondSegment 10 272 150 / 744 = 0.20161 0.00516 ## TweakMultimer 173 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 17 109 68 / 235 = 0.28936 0.00103 ## FixOmega 2 0 0 / 84 = 0.00000 0.00000 ## Backrub 113 182 81 / 395 = 0.20506 0.00199 ## BigBackrub 75 66 39 / 305 = 0.12787 0.00216 ## OneRotamer 0 241 107 / 1077 = 0.09935 0.00514 ## ClashingRotamer 1 3 1 / 173 = 0.00578 0.00076 ## ClusteredRotamer 15 4 2 / 139 = 0.01439 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 199 = 0.00503 0.00013 ## CloseGap 0 19 6 / 253 = 0.02372 0.00645 ## HealGap 0 12 7 / 266 = 0.02632 0.00088 ## MoveGap 0 0 0 / 89 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 203 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 92 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 193 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 90 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 450 = 0.00000 0.00000 ## CrossOver 0 0 0 / 88 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 14 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 92 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 99 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)I359 # TweakPhi removed gap before (T0547)K175 # TweakPsiPhi removed gap before (T0547)D3 # TweakPhi removed gap before (T0547)N297 # TweakPhi removed gap before (T0547)L118 # TweakPsiSubtree removed gap before (T0547)A427 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiPhi removed gap before (T0547)A127 # TweakPsiPhi removed gap before (T0547)R293 # TweakPsiSubtree removed gap before (T0547)L408 # TweakPsiSubtree removed gap before (T0547)I432 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L557 # TweakPsiPhi removed gap before (T0547)N249 # TweakPsiPhi removed gap before (T0547)G190 # TweakPhi removed gap before (T0547)G159 # TweakPsiSubtree removed gap before (T0547)L497 # TweakPsiSubtree removed gap before (T0547)G517 # TweakPsiSubtree removed gap before (T0547)A276 # TweakPsiSubtree removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)K264 # TweakPhi removed gap before (T0547)N105 # TweakPsiSubtree removed gap before (T0547)H379 # TweakPsiPhi removed gap before (T0547)M149 # TweakPsiPhi removed gap before (T0547)N249 # TweakPsiPhi removed gap before (T0547)E346 # TweakPhi removed gap before (T0547)G111 # TweakPsiSubtree removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)R474 # TweakPsiSubtree removed gap before (T0547)Y509 # TweakPsiSubtree removed gap before (T0547)N297 # TweakPsiSubtree removed gap before (T0547)H329 # TweakPhi removed gap before (T0547)L411 # TweakPhi removed gap before (T0547)Q433 # TweakPsiSubtree removed gap before (T0547)M571 # TweakPsiPhi removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPhi removed gap before (T0547)G610 # TweakPhi removed gap before (T0547)E361 # TweakPhi removed gap before (T0547)L394 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPsiSubtree removed gap before (T0547)V397 # TweakPsiPhi removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)L389 # TweakPsiSubtree removed gap before (T0547)Y63 # TweakPsiPhi removed gap before (T0547)I551 # TweakPsiPhi removed gap before (T0547)Y279 # TweakPsiSubtree removed gap before (T0547)G487 # TweakPsiPhi removed gap before (T0547)H151 # TweakPsiPhi removed gap before (T0547)Y363 # TweakPsiPhi removed gap before (T0547)T130 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I350 # TweakPhi removed gap before (T0547)H231 # TweakPsiSubtree removed gap before (T0547)I388 # TweakPsiPhi removed gap before (T0547)K587 # TweakPhi removed gap before (T0547)E213 # generation 134: best score out of 40: T0547.try1-opt2 206.19334 cost/residue, 821 clashes 0.12901 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 191 116 / 579 = 0.20035 0.00390 ## JiggleSubtree 2 44 28 / 394 = 0.07107 0.00557 ## JiggleSegment 5 55 38 / 493 = 0.07708 0.00468 ## OptSubtree 0 0 0 / 98 = 0.00000 0.00000 ## OptSegment 0 1 1 / 232 = 0.00431 0.00151 ## OptAllSegments 0 0 0 / 90 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 98 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 81 = 0.00000 0.00000 ## TweakPhiSubtree 35 369 221 / 881 = 0.25085 0.00597 ## TweakPhiSegment 41 468 285 / 994 = 0.28672 0.00657 ## TweakPsiSubtree 1 305 216 / 895 = 0.24134 0.00625 ## TweakPsiSegment 2 474 310 / 1207 = 0.25684 0.00791 ## TweakPsiPhiSubtree 79 328 195 / 697 = 0.27977 0.00485 ## TweakPsiPhiSegment 69 273 151 / 591 = 0.25550 0.00398 ## TweakHbondSubtree 11 234 151 / 771 = 0.19585 0.00471 ## TweakHbondSegment 11 272 150 / 748 = 0.20053 0.00514 ## TweakMultimer 173 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 17 109 68 / 235 = 0.28936 0.00103 ## FixOmega 2 0 0 / 85 = 0.00000 0.00000 ## Backrub 114 183 81 / 397 = 0.20403 0.00198 ## BigBackrub 76 68 40 / 310 = 0.12903 0.00216 ## OneRotamer 0 241 107 / 1078 = 0.09926 0.00514 ## ClashingRotamer 1 3 1 / 173 = 0.00578 0.00076 ## ClusteredRotamer 15 4 2 / 139 = 0.01439 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 199 = 0.00503 0.00013 ## CloseGap 0 19 6 / 253 = 0.02372 0.00645 ## HealGap 0 12 7 / 266 = 0.02632 0.00088 ## MoveGap 0 0 0 / 90 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 205 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 92 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 194 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 90 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 452 = 0.00000 0.00000 ## CrossOver 0 0 0 / 88 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 14 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 92 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 99 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)K28 # TweakPsiPhi removed gap before (T0547)F530 # TweakPhi removed gap before (T0547)S581 # TweakPsiSubtree removed gap before (T0547)K76 # TweakPsiSubtree removed gap before (T0547)I140 # TweakPsiPhi removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)F514 # TweakPhi removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)L271 # TweakPhi removed gap before (T0547)Y363 # TweakPsiSubtree removed gap before (T0547)L529 # TweakPsiPhi removed gap before (T0547)S202 # TweakPsiSubtree removed gap before (T0547)E470 # TweakPsiPhi removed gap before (T0547)F498 # TweakPsiPhi removed gap before (T0547)S581 # TweakPsiPhi removed gap before (T0547)C483 # TweakPsiPhi removed gap before (T0547)E561 # TweakPhi removed gap before (T0547)G544 # TweakPsiSubtree removed gap before (T0547)K36 # TweakPsiSubtree removed gap before (T0547)G205 # TweakPsiSubtree removed gap before (T0547)L411 # TweakPsiSubtree removed gap before (T0547)R70 # TweakPsiPhi removed gap before (T0547)T256 # TweakPhi removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)A553 # TweakPsiPhi removed gap before (T0547)L600 # TweakPsiSubtree removed gap before (T0547)I269 # TweakPsiPhi removed gap before (T0547)V184 # TweakPhi removed gap before (T0547)Y104 # TweakPsiPhi removed gap before (T0547)H568 # TweakPhi removed gap before (T0547)S197 # TweakPhi removed gap before (T0547)L358 # TweakPsiSubtree removed gap before (T0547)H242 # TweakPsiSubtree removed gap before (T0547)L47 # TweakPsiSubtree removed gap before (T0547)P451 # TweakPsiSubtree removed gap before (T0547)F227 # TweakPsiSubtree removed gap before (T0547)L139 # TweakPhi removed gap before (T0547)R173 # TweakPhi removed gap before (T0547)K28 # TweakPsiSubtree removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)N179 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)N305 # TweakPsiPhi removed gap before (T0547)K219 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N284 # TweakPhi removed gap before (T0547)D586 # TweakPsiSubtree removed gap before (T0547)D564 # TweakPsiSubtree removed gap before (T0547)E250 # generation 135: best score out of 40: T0547.try1-opt2 206.14607 cost/residue, 820 clashes 0.12979 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 194 119 / 589 = 0.20204 0.00388 ## JiggleSubtree 2 44 28 / 394 = 0.07107 0.00557 ## JiggleSegment 5 55 38 / 494 = 0.07692 0.00467 ## OptSubtree 0 0 0 / 98 = 0.00000 0.00000 ## OptSegment 0 1 1 / 232 = 0.00431 0.00151 ## OptAllSegments 0 0 0 / 90 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 98 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 81 = 0.00000 0.00000 ## TweakPhiSubtree 35 373 225 / 893 = 0.25196 0.00605 ## TweakPhiSegment 41 470 287 / 998 = 0.28758 0.00659 ## TweakPsiSubtree 1 306 216 / 901 = 0.23973 0.00621 ## TweakPsiSegment 2 479 316 / 1223 = 0.25838 0.00784 ## TweakPsiPhiSubtree 80 333 200 / 705 = 0.28369 0.00485 ## TweakPsiPhiSegment 69 276 152 / 598 = 0.25418 0.00394 ## TweakHbondSubtree 11 237 153 / 781 = 0.19590 0.00466 ## TweakHbondSegment 11 273 150 / 750 = 0.20000 0.00512 ## TweakMultimer 176 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 17 109 68 / 236 = 0.28814 0.00103 ## FixOmega 2 0 0 / 85 = 0.00000 0.00000 ## Backrub 117 187 83 / 403 = 0.20596 0.00198 ## BigBackrub 76 69 41 / 313 = 0.13099 0.00265 ## OneRotamer 0 242 108 / 1080 = 0.10000 0.00523 ## ClashingRotamer 1 3 1 / 173 = 0.00578 0.00076 ## ClusteredRotamer 15 4 2 / 139 = 0.01439 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 202 = 0.00495 0.00013 ## CloseGap 0 19 6 / 254 = 0.02362 0.00643 ## HealGap 0 12 7 / 266 = 0.02632 0.00088 ## MoveGap 0 0 0 / 90 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 205 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 92 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 195 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 91 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 456 = 0.00000 0.00000 ## CrossOver 0 0 0 / 88 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 15 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 92 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 100 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)D383 # TweakPhi removed gap before (T0547)L108 # TweakPsiPhi removed gap before (T0547)S477 # TweakPsiPhi removed gap before (T0547)L275 # TweakPhi removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)A146 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K102 # TweakPsiSubtree removed gap before (T0547)E294 # TweakPhi removed gap before (T0547)V82 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K102 # TweakPhi removed gap before (T0547)Y509 # TweakPsiSubtree removed gap before (T0547)G252 # TweakPhi removed gap before (T0547)E376 # TweakPsiSubtree removed gap before (T0547)A327 # TweakPsiPhi removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)E72 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V21 # TweakPsiSubtree removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPsiSubtree removed gap before (T0547)E26 # TweakPsiSubtree removed gap before (T0547)D383 # TweakPsiSubtree removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)I157 # TweakPsiSubtree removed gap before (T0547)Y63 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G19 # TweakPhi removed gap before (T0547)L349 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPsiSubtree removed gap before (T0547)E138 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPhi removed gap before (T0547)G610 # TweakPsiSubtree removed gap before (T0547)K135 # TweakPsiSubtree removed gap before (T0547)N65 # TweakPhi removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)A405 # TweakPhi removed gap before (T0547)I592 # TweakPhi removed gap before (T0547)V442 # TweakPsiSubtree removed gap before (T0547)R474 # TweakPhi removed gap before (T0547)G262 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A307 # generation 136: best score out of 40: T0547.try1-opt2 205.97679 cost/residue, 816 clashes 0.13036 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 199 121 / 597 = 0.20268 0.00388 ## JiggleSubtree 2 44 28 / 395 = 0.07089 0.00556 ## JiggleSegment 5 55 38 / 495 = 0.07677 0.00466 ## OptSubtree 0 0 0 / 98 = 0.00000 0.00000 ## OptSegment 0 1 1 / 232 = 0.00431 0.00151 ## OptAllSegments 0 0 0 / 91 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 99 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 81 = 0.00000 0.00000 ## TweakPhiSubtree 35 377 228 / 903 = 0.25249 0.00601 ## TweakPhiSegment 41 471 287 / 1002 = 0.28643 0.00656 ## TweakPsiSubtree 1 309 216 / 914 = 0.23632 0.00612 ## TweakPsiSegment 2 483 320 / 1233 = 0.25953 0.00799 ## TweakPsiPhiSubtree 81 333 200 / 709 = 0.28209 0.00483 ## TweakPsiPhiSegment 69 276 152 / 598 = 0.25418 0.00394 ## TweakHbondSubtree 12 238 153 / 787 = 0.19441 0.00462 ## TweakHbondSegment 12 277 153 / 762 = 0.20079 0.00512 ## TweakMultimer 177 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 17 109 71 / 239 = 0.29707 0.00103 ## FixOmega 2 0 0 / 85 = 0.00000 0.00000 ## Backrub 117 190 84 / 409 = 0.20538 0.00202 ## BigBackrub 81 71 43 / 322 = 0.13354 0.00277 ## OneRotamer 0 244 109 / 1087 = 0.10028 0.00523 ## ClashingRotamer 1 3 1 / 173 = 0.00578 0.00076 ## ClusteredRotamer 15 4 2 / 139 = 0.01439 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 202 = 0.00495 0.00013 ## CloseGap 0 19 6 / 254 = 0.02362 0.00643 ## HealGap 0 12 7 / 266 = 0.02632 0.00088 ## MoveGap 0 0 0 / 90 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 206 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 94 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 195 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 91 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 457 = 0.00000 0.00000 ## CrossOver 0 0 0 / 88 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 15 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 92 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 100 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)L420 # TweakPsiPhi removed gap before (T0547)F51 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)P178 # TweakPsiSubtree removed gap before (T0547)D586 # TweakPsiSubtree removed gap before (T0547)E361 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPsiPhi removed gap before (T0547)D401 # TweakPsiSubtree removed gap before (T0547)N585 # TweakPsiPhi removed gap before (T0547)D103 # TweakPsiSubtree removed gap before (T0547)N404 # TweakPsiSubtree removed gap before (T0547)D484 # TweakPhi removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)F301 # TweakPsiSubtree removed gap before (T0547)Y491 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I317 # TweakPsiSubtree removed gap before (T0547)A427 # TweakPsiSubtree removed gap before (T0547)L48 # TweakPsiSubtree removed gap before (T0547)K177 # TweakPhi removed gap before (T0547)L419 # TweakPsiSubtree removed gap before (T0547)L155 # TweakPhi removed gap before (T0547)E285 # TweakPhi removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)L389 # TweakPhi removed gap before (T0547)D316 # TweakPsiSubtree removed gap before (T0547)A374 # TweakPsiPhi removed gap before (T0547)E552 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)D33 # TweakPsiPhi removed gap before (T0547)N289 # TweakPsiSubtree removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)P128 # TweakPhi removed gap before (T0547)R183 # TweakPsiSubtree removed gap before (T0547)Q458 # TweakPsiSubtree removed gap before (T0547)F66 # TweakPhi removed gap before (T0547)A431 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)K177 # TweakPsiSubtree removed gap before (T0547)K17 # generation 137: best score out of 40: T0547.try1-opt2 205.97679 cost/residue, 816 clashes 0.13036 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 201 122 / 604 = 0.20199 0.00385 ## JiggleSubtree 2 44 28 / 395 = 0.07089 0.00556 ## JiggleSegment 5 55 38 / 497 = 0.07646 0.00464 ## OptSubtree 0 0 0 / 99 = 0.00000 0.00000 ## OptSegment 0 1 1 / 233 = 0.00429 0.00150 ## OptAllSegments 0 0 0 / 92 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 99 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 83 = 0.00000 0.00000 ## TweakPhiSubtree 37 378 228 / 909 = 0.25083 0.00597 ## TweakPhiSegment 41 471 288 / 1004 = 0.28685 0.00655 ## TweakPsiSubtree 1 313 218 / 926 = 0.23542 0.00609 ## TweakPsiSegment 2 490 324 / 1250 = 0.25920 0.00798 ## TweakPsiPhiSubtree 83 336 200 / 714 = 0.28011 0.00479 ## TweakPsiPhiSegment 69 277 152 / 601 = 0.25291 0.00392 ## TweakHbondSubtree 12 240 153 / 791 = 0.19343 0.00460 ## TweakHbondSegment 13 278 153 / 770 = 0.19870 0.00507 ## TweakMultimer 183 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 17 111 71 / 243 = 0.29218 0.00101 ## FixOmega 2 0 0 / 85 = 0.00000 0.00000 ## Backrub 118 190 84 / 412 = 0.20388 0.00201 ## BigBackrub 84 72 43 / 330 = 0.13030 0.00270 ## OneRotamer 0 244 109 / 1091 = 0.09991 0.00521 ## ClashingRotamer 1 3 1 / 173 = 0.00578 0.00076 ## ClusteredRotamer 15 4 2 / 139 = 0.01439 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 202 = 0.00495 0.00013 ## CloseGap 0 19 6 / 254 = 0.02362 0.00643 ## HealGap 0 12 7 / 267 = 0.02622 0.00088 ## MoveGap 0 0 0 / 90 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 206 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 95 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 197 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 92 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 460 = 0.00000 0.00000 ## CrossOver 0 0 0 / 88 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 15 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 93 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 101 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)H151 # TweakPsiPhi removed gap before (T0547)N253 # TweakPsiPhi removed gap before (T0547)V131 # TweakPsiSubtree removed gap before (T0547)A268 # TweakPhi removed gap before (T0547)G252 # TweakPsiSubtree removed gap before (T0547)P315 # TweakPsiSubtree removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)S208 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L223 # TweakPhi removed gap before (T0547)N253 # TweakPsiSubtree removed gap before (T0547)E37 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)H379 # TweakPsiPhi removed gap before (T0547)Y491 # TweakPsiSubtree removed gap before (T0547)V35 # TweakPsiPhi removed gap before (T0547)I317 # TweakPsiPhi removed gap before (T0547)V35 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)E60 # TweakPhi removed gap before (T0547)G45 # TweakPsiSubtree removed gap before (T0547)V35 # TweakPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)G78 # TweakPhi removed gap before (T0547)E505 # TweakPsiPhi removed gap before (T0547)D562 # TweakPsiPhi removed gap before (T0547)E507 # TweakPhi removed gap before (T0547)Q56 # TweakPsiSubtree removed gap before (T0547)A569 # TweakPhi removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)L206 # TweakPsiSubtree removed gap before (T0547)N459 # TweakPsiPhi removed gap before (T0547)N132 # TweakPsiSubtree removed gap before (T0547)F324 # TweakPsiSubtree removed gap before (T0547)L574 # TweakPhi removed gap before (T0547)Q281 # TweakPsiPhi removed gap before (T0547)G610 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)H233 # TweakPsiSubtree removed gap before (T0547)G235 # TweakPsiSubtree removed gap before (T0547)E595 # TweakPsiSubtree removed gap before (T0547)E294 # TweakPsiSubtree removed gap before (T0547)D503 # TweakPsiSubtree removed gap before (T0547)E552 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPhi removed gap before (T0547)E507 # TweakPhi removed gap before (T0547)D3 # TweakPhi removed gap before (T0547)G78 # TweakPsiSubtree removed gap before (T0547)E12 # generation 138: best score out of 40: T0547.try1-opt2 205.95505 cost/residue, 816 clashes 0.13058 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 203 122 / 611 = 0.19967 0.00380 ## JiggleSubtree 2 44 28 / 395 = 0.07089 0.00556 ## JiggleSegment 5 55 38 / 498 = 0.07631 0.00463 ## OptSubtree 0 0 0 / 99 = 0.00000 0.00000 ## OptSegment 0 1 1 / 234 = 0.00427 0.00150 ## OptAllSegments 0 0 0 / 92 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 101 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 84 = 0.00000 0.00000 ## TweakPhiSubtree 38 381 230 / 916 = 0.25109 0.00597 ## TweakPhiSegment 42 471 288 / 1010 = 0.28515 0.00652 ## TweakPsiSubtree 1 317 220 / 934 = 0.23555 0.00605 ## TweakPsiSegment 2 497 328 / 1265 = 0.25929 0.00795 ## TweakPsiPhiSubtree 83 340 201 / 721 = 0.27878 0.00475 ## TweakPsiPhiSegment 69 281 154 / 606 = 0.25413 0.00396 ## TweakHbondSubtree 12 240 153 / 794 = 0.19270 0.00458 ## TweakHbondSegment 13 281 155 / 777 = 0.19949 0.00508 ## TweakMultimer 185 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 17 111 71 / 243 = 0.29218 0.00101 ## FixOmega 2 0 0 / 85 = 0.00000 0.00000 ## Backrub 120 190 84 / 412 = 0.20388 0.00201 ## BigBackrub 86 75 44 / 341 = 0.12903 0.00272 ## OneRotamer 0 245 110 / 1102 = 0.09982 0.00516 ## ClashingRotamer 1 3 1 / 173 = 0.00578 0.00076 ## ClusteredRotamer 15 4 2 / 139 = 0.01439 0.00083 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 202 = 0.00495 0.00013 ## CloseGap 0 19 6 / 256 = 0.02344 0.00638 ## HealGap 0 12 7 / 267 = 0.02622 0.00088 ## MoveGap 0 0 0 / 90 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 206 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 95 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 198 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 93 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 463 = 0.00000 0.00000 ## CrossOver 0 0 0 / 88 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 15 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 93 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 102 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)Q400 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)D380 # TweakPhi removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)S287 # TweakPsiPhi removed gap before (T0547)F498 # TweakPsiSubtree removed gap before (T0547)E507 # TweakPhi removed gap before (T0547)D40 # TweakPhi removed gap before (T0547)S236 # TweakPhi removed gap before (T0547)K171 # TweakPsiPhi removed gap before (T0547)I319 # TweakPsiSubtree removed gap before (T0547)T534 # TweakPsiSubtree removed gap before (T0547)L182 # TweakPsiPhi removed gap before (T0547)D562 # TweakPhi removed gap before (T0547)A326 # TweakPsiPhi removed gap before (T0547)E257 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)D602 # TweakPhi removed gap before (T0547)I556 # TweakPsiSubtree removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)N603 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPsiPhi removed gap before (T0547)G322 # TweakPsiSubtree removed gap before (T0547)G111 # TweakPsiPhi removed gap before (T0547)A307 # TweakPsiSubtree removed gap before (T0547)S280 # TweakPsiSubtree removed gap before (T0547)I609 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPhi removed gap before (T0547)T207 # TweakPsiSubtree removed gap before (T0547)I238 # TweakPhi removed gap before (T0547)K493 # TweakPsiSubtree removed gap before (T0547)D484 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)G190 # TweakPsiPhi removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)G610 # TweakPhi removed gap before (T0547)N528 # TweakPsiSubtree removed gap before (T0547)E552 # TweakPhi removed gap before (T0547)Q237 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)D393 # TweakPsiSubtree removed gap before (T0547)V436 # TweakPhi removed gap before (T0547)N528 # TweakPhi removed gap before (T0547)F232 # TweakPhi removed gap before (T0547)V94 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)D383 # TweakPhi removed gap before (T0547)H329 # generation 139: best score out of 40: T0547.try1-opt2 205.91533 cost/residue, 814 clashes 0.13051 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 206 125 / 618 = 0.20227 0.00383 ## JiggleSubtree 2 44 28 / 395 = 0.07089 0.00556 ## JiggleSegment 5 55 38 / 501 = 0.07585 0.00460 ## OptSubtree 0 0 0 / 99 = 0.00000 0.00000 ## OptSegment 0 1 1 / 234 = 0.00427 0.00150 ## OptAllSegments 0 0 0 / 92 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 101 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 85 = 0.00000 0.00000 ## TweakPhiSubtree 39 385 232 / 927 = 0.25027 0.00594 ## TweakPhiSegment 42 475 293 / 1019 = 0.28754 0.00649 ## TweakPsiSubtree 1 319 222 / 941 = 0.23592 0.00608 ## TweakPsiSegment 2 500 329 / 1279 = 0.25723 0.00790 ## TweakPsiPhiSubtree 83 343 204 / 726 = 0.28099 0.00475 ## TweakPsiPhiSegment 69 282 158 / 610 = 0.25902 0.00404 ## TweakHbondSubtree 13 242 155 / 796 = 0.19472 0.00462 ## TweakHbondSegment 13 284 156 / 784 = 0.19898 0.00503 ## TweakMultimer 185 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 18 111 72 / 244 = 0.29508 0.00105 ## FixOmega 2 0 0 / 85 = 0.00000 0.00000 ## Backrub 122 191 86 / 416 = 0.20673 0.00209 ## BigBackrub 86 76 45 / 349 = 0.12894 0.00278 ## OneRotamer 0 246 111 / 1108 = 0.10018 0.00515 ## ClashingRotamer 1 3 1 / 173 = 0.00578 0.00076 ## ClusteredRotamer 15 4 2 / 140 = 0.01429 0.00082 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 202 = 0.00495 0.00013 ## CloseGap 0 19 6 / 256 = 0.02344 0.00638 ## HealGap 0 12 7 / 268 = 0.02612 0.00088 ## MoveGap 0 0 0 / 90 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 208 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 96 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 199 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 94 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 464 = 0.00000 0.00000 ## CrossOver 0 0 0 / 88 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 15 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 94 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 104 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K587 # TweakPsiSubtree removed gap before (T0547)V300 # TweakPsiSubtree removed gap before (T0547)A296 # TweakPsiSubtree removed gap before (T0547)A405 # TweakPsiSubtree removed gap before (T0547)L223 # TweakPhi removed gap before (T0547)I478 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPsiPhi removed gap before (T0547)V331 # TweakPsiSubtree removed gap before (T0547)E406 # TweakPsiSubtree removed gap before (T0547)I180 # TweakPhi removed gap before (T0547)D428 # TweakPsiSubtree removed gap before (T0547)R70 # TweakPsiSubtree removed gap before (T0547)C22 # TweakPsiPhi removed gap before (T0547)A69 # TweakPhi removed gap before (T0547)G19 # TweakPsiSubtree removed gap before (T0547)Q458 # TweakPsiSubtree removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)G610 # TweakPhi removed gap before (T0547)W479 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)F599 # TweakPhi removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)G107 # TweakPsiPhi removed gap before (T0547)T413 # TweakPsiPhi removed gap before (T0547)D393 # TweakPhi removed gap before (T0547)G252 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F324 # TweakPsiSubtree removed gap before (T0547)L394 # TweakPsiSubtree removed gap before (T0547)V184 # TweakPhi removed gap before (T0547)S492 # TweakPhi removed gap before (T0547)I382 # TweakPhi removed gap before (T0547)L418 # TweakPsiSubtree removed gap before (T0547)M229 # TweakPsiSubtree removed gap before (T0547)L186 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A189 # TweakPhi removed gap before (T0547)G517 # TweakPhi removed gap before (T0547)K76 # TweakPsiSubtree removed gap before (T0547)G181 # TweakPhi removed gap before (T0547)S287 # TweakPsiSubtree removed gap before (T0547)T482 # TweakPhi removed gap before (T0547)N284 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I350 # TweakPhi removed gap before (T0547)G517 # TweakPhi removed gap before (T0547)F204 # TweakPhi removed gap before (T0547)A30 # generation 140: best score out of 40: T0547.try1-opt2 205.88596 cost/residue, 815 clashes 0.13035 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 206 125 / 620 = 0.20161 0.00382 ## JiggleSubtree 2 44 28 / 396 = 0.07071 0.00555 ## JiggleSegment 5 55 38 / 502 = 0.07570 0.00459 ## OptSubtree 0 0 0 / 99 = 0.00000 0.00000 ## OptSegment 0 1 1 / 234 = 0.00427 0.00150 ## OptAllSegments 0 0 0 / 93 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 101 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 85 = 0.00000 0.00000 ## TweakPhiSubtree 39 390 236 / 942 = 0.25053 0.00596 ## TweakPhiSegment 42 477 295 / 1023 = 0.28837 0.00651 ## TweakPsiSubtree 1 321 223 / 949 = 0.23498 0.00603 ## TweakPsiSegment 2 505 332 / 1293 = 0.25677 0.00784 ## TweakPsiPhiSubtree 83 343 204 / 726 = 0.28099 0.00475 ## TweakPsiPhiSegment 70 283 159 / 617 = 0.25770 0.00407 ## TweakHbondSubtree 13 242 155 / 804 = 0.19279 0.00457 ## TweakHbondSegment 13 286 158 / 794 = 0.19899 0.00500 ## TweakMultimer 187 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 19 114 73 / 249 = 0.29317 0.00105 ## FixOmega 2 0 0 / 85 = 0.00000 0.00000 ## Backrub 126 193 87 / 420 = 0.20714 0.00209 ## BigBackrub 89 77 46 / 354 = 0.12994 0.00278 ## OneRotamer 0 249 113 / 1116 = 0.10125 0.00513 ## ClashingRotamer 1 3 1 / 173 = 0.00578 0.00076 ## ClusteredRotamer 15 4 2 / 140 = 0.01429 0.00082 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 202 = 0.00495 0.00013 ## CloseGap 0 19 6 / 257 = 0.02335 0.00635 ## HealGap 0 12 7 / 269 = 0.02602 0.00087 ## MoveGap 0 0 0 / 91 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 208 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 96 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 199 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 96 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 465 = 0.00000 0.00000 ## CrossOver 0 0 0 / 89 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 15 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 94 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 104 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)I16 # TweakPsiSubtree removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)Y4 # TweakPsiSubtree removed gap before (T0547)K264 # TweakPsiPhi removed gap before (T0547)F447 # TweakPsiPhi removed gap before (T0547)I23 # TweakPsiPhi removed gap before (T0547)L100 # TweakPsiPhi removed gap before (T0547)S477 # TweakPsiPhi removed gap before (T0547)A263 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)Q226 # TweakPsiSubtree removed gap before (T0547)I34 # TweakPsiPhi removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)G235 # TweakPsiPhi removed gap before (T0547)A330 # TweakPhi removed gap before (T0547)Q554 # TweakPhi removed gap before (T0547)V277 # TweakPsiPhi removed gap before (T0547)L54 # TweakPsiSubtree removed gap before (T0547)A127 # TweakPhi removed gap before (T0547)A330 # TweakPsiSubtree removed gap before (T0547)E470 # TweakPhi removed gap before (T0547)L292 # TweakPsiSubtree removed gap before (T0547)Y290 # TweakPsiSubtree removed gap before (T0547)P472 # TweakPsiSubtree removed gap before (T0547)L224 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Q400 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)M229 # TweakPhi removed gap before (T0547)F324 # TweakPsiPhi removed gap before (T0547)L182 # TweakPsiPhi removed gap before (T0547)G150 # TweakPhi removed gap before (T0547)T473 # TweakPsiSubtree removed gap before (T0547)K415 # TweakPhi removed gap before (T0547)M2 # TweakPhi removed gap before (T0547)Y519 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L337 # TweakPhi removed gap before (T0547)K171 # TweakPsiSubtree removed gap before (T0547)D434 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I573 # TweakPsiSubtree removed gap before (T0547)S236 # TweakPsiSubtree removed gap before (T0547)A307 # TweakPsiPhi removed gap before (T0547)F93 # TweakPhi removed gap before (T0547)S403 # generation 141: best score out of 40: T0547.try1-opt2 205.83055 cost/residue, 814 clashes 0.12979 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 208 126 / 624 = 0.20192 0.00389 ## JiggleSubtree 2 44 28 / 396 = 0.07071 0.00555 ## JiggleSegment 5 55 38 / 504 = 0.07540 0.00458 ## OptSubtree 0 0 0 / 99 = 0.00000 0.00000 ## OptSegment 0 1 1 / 235 = 0.00426 0.00149 ## OptAllSegments 0 0 0 / 94 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 102 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 85 = 0.00000 0.00000 ## TweakPhiSubtree 40 392 237 / 950 = 0.24947 0.00599 ## TweakPhiSegment 42 478 296 / 1028 = 0.28794 0.00650 ## TweakPsiSubtree 1 323 223 / 959 = 0.23253 0.00597 ## TweakPsiSegment 2 510 334 / 1303 = 0.25633 0.00779 ## TweakPsiPhiSubtree 84 348 205 / 734 = 0.27929 0.00472 ## TweakPsiPhiSegment 72 286 160 / 625 = 0.25600 0.00402 ## TweakHbondSubtree 13 242 155 / 809 = 0.19159 0.00454 ## TweakHbondSegment 13 287 159 / 801 = 0.19850 0.00497 ## TweakMultimer 188 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 20 115 73 / 252 = 0.28968 0.00103 ## FixOmega 2 0 0 / 85 = 0.00000 0.00000 ## Backrub 129 193 88 / 421 = 0.20903 0.00210 ## BigBackrub 92 79 48 / 359 = 0.13370 0.00291 ## OneRotamer 0 251 114 / 1127 = 0.10115 0.00508 ## ClashingRotamer 1 3 1 / 174 = 0.00575 0.00075 ## ClusteredRotamer 15 4 2 / 140 = 0.01429 0.00082 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 204 = 0.00490 0.00013 ## CloseGap 0 19 6 / 257 = 0.02335 0.00635 ## HealGap 0 12 7 / 269 = 0.02602 0.00087 ## MoveGap 0 0 0 / 92 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 209 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 96 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 199 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 96 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 467 = 0.00000 0.00000 ## CrossOver 0 0 0 / 90 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 16 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 94 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 105 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)D466 # TweakPsiPhi removed gap before (T0547)D422 # TweakPsiSubtree removed gap before (T0547)L116 # TweakPsiSubtree removed gap before (T0547)V331 # TweakPhi removed gap before (T0547)C22 # TweakPsiPhi removed gap before (T0547)K493 # TweakPsiPhi removed gap before (T0547)V87 # TweakPsiPhi removed gap before (T0547)L38 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)R39 # TweakPhi removed gap before (T0547)L446 # TweakPhi removed gap before (T0547)E240 # TweakPsiPhi removed gap before (T0547)I319 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPsiPhi removed gap before (T0547)K68 # TweakPsiSubtree removed gap before (T0547)K76 # TweakPsiSubtree removed gap before (T0547)S372 # TweakPhi removed gap before (T0547)G42 # TweakPsiSubtree removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)D562 # TweakPsiPhi removed gap before (T0547)S581 # TweakPsiSubtree removed gap before (T0547)D558 # TweakPhi removed gap before (T0547)Y440 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)L118 # TweakPsiSubtree removed gap before (T0547)S188 # TweakPsiSubtree removed gap before (T0547)Q226 # TweakPhi removed gap before (T0547)E507 # TweakPsiPhi removed gap before (T0547)E488 # TweakPhi removed gap before (T0547)T413 # TweakPsiSubtree removed gap before (T0547)I382 # TweakPsiSubtree removed gap before (T0547)L271 # TweakPsiPhi removed gap before (T0547)L596 # TweakPsiPhi removed gap before (T0547)R50 # TweakPhi removed gap before (T0547)D434 # TweakPsiSubtree removed gap before (T0547)L523 # TweakPhi removed gap before (T0547)I167 # TweakPhi removed gap before (T0547)N459 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I550 # TweakPhi removed gap before (T0547)R183 # TweakPhi removed gap before (T0547)D393 # TweakPhi removed gap before (T0547)A110 # TweakPsiSubtree removed gap before (T0547)G262 # TweakPsiSubtree removed gap before (T0547)G107 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPsiPhi removed gap before (T0547)L244 # TweakPhi removed gap before (T0547)A268 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)A296 # TweakPsiPhi removed gap before (T0547)L358 # TweakPsiSubtree removed gap before (T0547)D103 # generation 142: best score out of 40: T0547.try1-opt2 205.75963 cost/residue, 816 clashes 0.13045 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 208 127 / 631 = 0.20127 0.00386 ## JiggleSubtree 2 44 28 / 396 = 0.07071 0.00555 ## JiggleSegment 5 55 38 / 506 = 0.07510 0.00456 ## OptSubtree 0 0 0 / 99 = 0.00000 0.00000 ## OptSegment 0 1 1 / 237 = 0.00422 0.00148 ## OptAllSegments 0 0 0 / 94 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 102 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 85 = 0.00000 0.00000 ## TweakPhiSubtree 40 393 237 / 960 = 0.24688 0.00592 ## TweakPhiSegment 42 480 296 / 1034 = 0.28627 0.00646 ## TweakPsiSubtree 1 326 225 / 966 = 0.23292 0.00609 ## TweakPsiSegment 2 520 343 / 1320 = 0.25985 0.00781 ## TweakPsiPhiSubtree 84 351 208 / 741 = 0.28070 0.00475 ## TweakPsiPhiSegment 74 287 162 / 632 = 0.25633 0.00407 ## TweakHbondSubtree 13 243 156 / 811 = 0.19236 0.00454 ## TweakHbondSegment 13 288 159 / 804 = 0.19776 0.00495 ## TweakMultimer 189 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 21 115 73 / 252 = 0.28968 0.00103 ## FixOmega 2 0 0 / 85 = 0.00000 0.00000 ## Backrub 129 195 89 / 423 = 0.21040 0.00210 ## BigBackrub 97 81 49 / 370 = 0.13243 0.00287 ## OneRotamer 0 251 114 / 1132 = 0.10071 0.00506 ## ClashingRotamer 1 3 1 / 176 = 0.00568 0.00074 ## ClusteredRotamer 15 4 2 / 141 = 0.01418 0.00082 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 206 = 0.00485 0.00013 ## CloseGap 0 19 6 / 257 = 0.02335 0.00635 ## HealGap 0 12 7 / 269 = 0.02602 0.00087 ## MoveGap 0 0 0 / 92 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 211 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 96 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 200 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 96 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 469 = 0.00000 0.00000 ## CrossOver 0 0 0 / 91 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 16 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 94 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 106 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)E346 # TweakPsiSubtree removed gap before (T0547)I551 # TweakPsiPhi removed gap before (T0547)S112 # TweakPsiSubtree removed gap before (T0547)Q437 # TweakPhi removed gap before (T0547)G199 # TweakPsiPhi removed gap before (T0547)G107 # TweakPsiPhi removed gap before (T0547)L497 # TweakPhi removed gap before (T0547)D494 # TweakPsiPhi removed gap before (T0547)D494 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N305 # TweakPhi removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)R467 # TweakPsiSubtree removed gap before (T0547)E158 # TweakPsiPhi removed gap before (T0547)D586 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)P356 # TweakPsiPhi removed gap before (T0547)A569 # TweakPsiSubtree removed gap before (T0547)F318 # TweakPhi removed gap before (T0547)G487 # TweakPsiSubtree removed gap before (T0547)L182 # TweakPhi removed gap before (T0547)L100 # TweakPsiPhi removed gap before (T0547)G101 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)R259 # TweakPsiSubtree removed gap before (T0547)S341 # TweakPsiSubtree removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)L223 # TweakPhi removed gap before (T0547)A476 # TweakPsiSubtree removed gap before (T0547)A214 # TweakPsiPhi removed gap before (T0547)A268 # TweakPhi removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)W479 # TweakPsiSubtree removed gap before (T0547)D380 # TweakPhi removed gap before (T0547)R293 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)D136 # TweakPsiSubtree removed gap before (T0547)A170 # TweakPsiPhi removed gap before (T0547)E60 # TweakPsiSubtree removed gap before (T0547)Q554 # TweakPsiSubtree removed gap before (T0547)R288 # TweakPhi removed gap before (T0547)E561 # TweakPsiPhi removed gap before (T0547)K102 # TweakPsiSubtree removed gap before (T0547)L108 # generation 143: best score out of 40: T0547.try1-opt2 205.71344 cost/residue, 808 clashes 0.13033 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 211 129 / 639 = 0.20188 0.00385 ## JiggleSubtree 2 44 28 / 396 = 0.07071 0.00555 ## JiggleSegment 5 55 38 / 506 = 0.07510 0.00456 ## OptSubtree 0 0 0 / 99 = 0.00000 0.00000 ## OptSegment 0 1 1 / 237 = 0.00422 0.00148 ## OptAllSegments 0 0 0 / 94 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 102 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 86 = 0.00000 0.00000 ## TweakPhiSubtree 40 395 240 / 965 = 0.24870 0.00592 ## TweakPhiSegment 42 482 301 / 1041 = 0.28915 0.00646 ## TweakPsiSubtree 1 328 227 / 975 = 0.23282 0.00608 ## TweakPsiSegment 2 523 345 / 1332 = 0.25901 0.00776 ## TweakPsiPhiSubtree 86 354 209 / 745 = 0.28054 0.00473 ## TweakPsiPhiSegment 77 289 164 / 641 = 0.25585 0.00406 ## TweakHbondSubtree 13 245 156 / 819 = 0.19048 0.00450 ## TweakHbondSegment 13 291 161 / 810 = 0.19877 0.00498 ## TweakMultimer 191 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 21 116 74 / 254 = 0.29134 0.00106 ## FixOmega 2 0 0 / 85 = 0.00000 0.00000 ## Backrub 131 195 89 / 424 = 0.20991 0.00209 ## BigBackrub 98 85 50 / 386 = 0.12953 0.00277 ## OneRotamer 0 254 116 / 1139 = 0.10184 0.00519 ## ClashingRotamer 1 3 1 / 176 = 0.00568 0.00074 ## ClusteredRotamer 15 4 2 / 141 = 0.01418 0.00082 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 208 = 0.00481 0.00013 ## CloseGap 0 19 6 / 257 = 0.02335 0.00635 ## HealGap 0 12 7 / 269 = 0.02602 0.00087 ## MoveGap 0 0 0 / 92 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 211 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 96 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 201 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 96 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 470 = 0.00000 0.00000 ## CrossOver 0 0 0 / 91 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 16 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 94 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 107 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)N355 # TweakPhi removed gap before (T0547)H527 # TweakPhi removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)M571 # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPsiSubtree removed gap before (T0547)A427 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)E220 # TweakPsiSubtree removed gap before (T0547)F510 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)F134 # TweakPsiSubtree removed gap before (T0547)K175 # TweakPsiSubtree removed gap before (T0547)L303 # TweakPsiPhi removed gap before (T0547)D586 # TweakPsiSubtree removed gap before (T0547)I556 # TweakPsiSubtree removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)D562 # TweakPhi removed gap before (T0547)S445 # TweakPhi removed gap before (T0547)K587 # TweakPsiPhi removed gap before (T0547)K423 # TweakPsiSubtree removed gap before (T0547)K68 # TweakPhi removed gap before (T0547)I417 # TweakPhi removed gap before (T0547)I317 # TweakPsiSubtree removed gap before (T0547)L186 # TweakPhi removed gap before (T0547)N541 # TweakPsiPhi removed gap before (T0547)R70 # TweakPhi removed gap before (T0547)R439 # TweakPsiSubtree removed gap before (T0547)D33 # TweakPsiPhi removed gap before (T0547)G199 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPhi removed gap before (T0547)D494 # TweakPhi removed gap before (T0547)R439 # TweakPhi removed gap before (T0547)E343 # TweakPsiPhi removed gap before (T0547)G92 # TweakPsiSubtree removed gap before (T0547)A326 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPsiSubtree removed gap before (T0547)Y90 # TweakPhi removed gap before (T0547)V277 # TweakPhi removed gap before (T0547)E278 # TweakPhi removed gap before (T0547)A146 # TweakPsiPhi removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)I23 # TweakPsiSubtree removed gap before (T0547)G512 # generation 144: best score out of 40: T0547.try1-opt2 205.66043 cost/residue, 807 clashes 0.13016 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 212 130 / 645 = 0.20155 0.00382 ## JiggleSubtree 2 44 28 / 396 = 0.07071 0.00555 ## JiggleSegment 5 55 38 / 507 = 0.07495 0.00455 ## OptSubtree 0 0 0 / 99 = 0.00000 0.00000 ## OptSegment 0 1 1 / 237 = 0.00422 0.00148 ## OptAllSegments 0 0 0 / 95 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 102 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 87 = 0.00000 0.00000 ## TweakPhiSubtree 40 399 240 / 974 = 0.24641 0.00587 ## TweakPhiSegment 42 485 303 / 1051 = 0.28830 0.00640 ## TweakPsiSubtree 1 332 229 / 987 = 0.23202 0.00606 ## TweakPsiSegment 2 524 346 / 1342 = 0.25782 0.00770 ## TweakPsiPhiSubtree 86 355 209 / 751 = 0.27830 0.00469 ## TweakPsiPhiSegment 77 289 164 / 645 = 0.25426 0.00403 ## TweakHbondSubtree 13 247 156 / 822 = 0.18978 0.00448 ## TweakHbondSegment 13 294 164 / 817 = 0.20073 0.00499 ## TweakMultimer 192 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 21 116 74 / 254 = 0.29134 0.00106 ## FixOmega 3 0 0 / 87 = 0.00000 0.00000 ## Backrub 131 196 89 / 428 = 0.20794 0.00207 ## BigBackrub 99 87 50 / 391 = 0.12788 0.00273 ## OneRotamer 0 256 117 / 1149 = 0.10183 0.00516 ## ClashingRotamer 1 3 1 / 177 = 0.00565 0.00074 ## ClusteredRotamer 15 4 2 / 141 = 0.01418 0.00082 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 208 = 0.00481 0.00013 ## CloseGap 0 19 6 / 257 = 0.02335 0.00635 ## HealGap 0 12 7 / 271 = 0.02583 0.00087 ## MoveGap 0 0 0 / 93 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 212 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 96 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 202 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 96 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 472 = 0.00000 0.00000 ## CrossOver 0 0 0 / 92 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 16 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 94 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 107 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)K415 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E115 # TweakPhi removed gap before (T0547)I550 # TweakPhi removed gap before (T0547)Y440 # TweakPsiPhi removed gap before (T0547)F392 # TweakPsiPhi removed gap before (T0547)N141 # TweakPhi removed gap before (T0547)K587 # TweakPsiPhi removed gap before (T0547)R577 # TweakPsiSubtree removed gap before (T0547)Y295 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPsiPhi removed gap before (T0547)H233 # TweakPsiSubtree removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)E535 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L155 # TweakPhi removed gap before (T0547)V547 # TweakPhi removed gap before (T0547)A268 # TweakPsiSubtree removed gap before (T0547)L358 # TweakPhi removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)R259 # TweakPhi removed gap before (T0547)I269 # TweakPsiPhi removed gap before (T0547)G487 # TweakPhi removed gap before (T0547)N65 # TweakPsiPhi removed gap before (T0547)L139 # TweakPhi removed gap before (T0547)E521 # TweakPsiSubtree removed gap before (T0547)Q226 # TweakPhi removed gap before (T0547)Y363 # TweakPsiSubtree removed gap before (T0547)F599 # TweakPhi removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)S477 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K264 # TweakPsiPhi removed gap before (T0547)A569 # TweakPsiSubtree removed gap before (T0547)P29 # TweakPsiPhi removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)N61 # TweakPsiPhi removed gap before (T0547)V82 # TweakPsiPhi removed gap before (T0547)I169 # TweakPsiSubtree removed gap before (T0547)K177 # TweakPsiSubtree removed gap before (T0547)L108 # BackrubGuts cancelled---proline or break # generation 145: best score out of 40: T0547.try1-opt2 205.65088 cost/residue, 805 clashes 0.13016 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 218 133 / 659 = 0.20182 0.00378 ## JiggleSubtree 2 44 28 / 396 = 0.07071 0.00555 ## JiggleSegment 5 55 38 / 508 = 0.07480 0.00454 ## OptSubtree 0 0 0 / 99 = 0.00000 0.00000 ## OptSegment 0 1 1 / 238 = 0.00420 0.00147 ## OptAllSegments 0 0 0 / 95 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 102 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 87 = 0.00000 0.00000 ## TweakPhiSubtree 40 399 240 / 980 = 0.24490 0.00583 ## TweakPhiSegment 42 490 304 / 1061 = 0.28652 0.00635 ## TweakPsiSubtree 1 333 230 / 993 = 0.23162 0.00603 ## TweakPsiSegment 2 524 346 / 1347 = 0.25687 0.00768 ## TweakPsiPhiSubtree 88 357 211 / 757 = 0.27873 0.00466 ## TweakPsiPhiSegment 78 292 165 / 651 = 0.25346 0.00403 ## TweakHbondSubtree 13 247 156 / 823 = 0.18955 0.00447 ## TweakHbondSegment 13 300 165 / 832 = 0.19832 0.00490 ## TweakMultimer 194 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 22 117 74 / 255 = 0.29020 0.00106 ## FixOmega 3 0 0 / 88 = 0.00000 0.00000 ## Backrub 134 197 90 / 432 = 0.20833 0.00208 ## BigBackrub 100 87 50 / 393 = 0.12723 0.00272 ## OneRotamer 0 257 117 / 1162 = 0.10069 0.00510 ## ClashingRotamer 1 3 1 / 177 = 0.00565 0.00074 ## ClusteredRotamer 15 4 2 / 142 = 0.01408 0.00081 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 209 = 0.00478 0.00013 ## CloseGap 0 19 6 / 257 = 0.02335 0.00635 ## HealGap 0 12 7 / 271 = 0.02583 0.00087 ## MoveGap 0 0 0 / 93 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 212 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 96 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 204 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 99 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 473 = 0.00000 0.00000 ## CrossOver 0 0 0 / 92 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 16 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 94 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 107 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)S208 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)D428 # TweakPsiSubtree removed gap before (T0547)K260 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)E148 # TweakPsiSubtree removed gap before (T0547)E37 # TweakPsiSubtree removed gap before (T0547)A345 # TweakPsiSubtree removed gap before (T0547)G421 # TweakPhi removed gap before (T0547)H527 # TweakPsiSubtree removed gap before (T0547)H591 # TweakPsiSubtree removed gap before (T0547)D380 # TweakPsiSubtree removed gap before (T0547)L429 # TweakPhi removed gap before (T0547)L600 # TweakPsiSubtree removed gap before (T0547)I31 # TweakPsiPhi removed gap before (T0547)L186 # TweakPhi removed gap before (T0547)G273 # TweakPsiSubtree removed gap before (T0547)K589 # TweakPsiPhi removed gap before (T0547)I567 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I157 # TweakPsiPhi removed gap before (T0547)K20 # TweakPsiPhi removed gap before (T0547)L100 # TweakPsiSubtree removed gap before (T0547)L399 # TweakPsiPhi removed gap before (T0547)T409 # TweakPsiPhi removed gap before (T0547)K414 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)E346 # TweakPsiSubtree removed gap before (T0547)N253 # TweakPsiPhi removed gap before (T0547)L385 # TweakPhi removed gap before (T0547)E535 # TweakPsiPhi removed gap before (T0547)L54 # TweakPsiPhi removed gap before (T0547)I16 # TweakPsiSubtree removed gap before (T0547)I238 # TweakPsiPhi removed gap before (T0547)L408 # TweakPsiPhi removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)K311 # TweakPsiPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)Q309 # TweakPsiSubtree removed gap before (T0547)Y396 # TweakPhi removed gap before (T0547)E343 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E172 # TweakPsiSubtree removed gap before (T0547)Q226 # TweakPsiPhi removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPhi removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)K28 # TweakPhi removed gap before (T0547)A146 # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiSubtree removed gap before (T0547)I388 # TweakPsiSubtree removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)A146 # generation 146: best score out of 40: T0547.try1-opt2 205.63542 cost/residue, 805 clashes 0.13013 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 221 134 / 665 = 0.20150 0.00375 ## JiggleSubtree 2 44 28 / 397 = 0.07053 0.00553 ## JiggleSegment 5 55 38 / 509 = 0.07466 0.00453 ## OptSubtree 0 0 0 / 99 = 0.00000 0.00000 ## OptSegment 0 1 1 / 238 = 0.00420 0.00147 ## OptAllSegments 0 0 0 / 95 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 102 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 88 = 0.00000 0.00000 ## TweakPhiSubtree 40 401 242 / 982 = 0.24644 0.00582 ## TweakPhiSegment 43 494 305 / 1067 = 0.28585 0.00632 ## TweakPsiSubtree 1 333 231 / 1006 = 0.22962 0.00597 ## TweakPsiSegment 2 530 348 / 1360 = 0.25588 0.00762 ## TweakPsiPhiSubtree 90 362 212 / 765 = 0.27712 0.00463 ## TweakPsiPhiSegment 79 297 168 / 660 = 0.25455 0.00404 ## TweakHbondSubtree 14 248 156 / 828 = 0.18841 0.00445 ## TweakHbondSegment 13 300 166 / 836 = 0.19856 0.00488 ## TweakMultimer 199 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 22 117 74 / 257 = 0.28794 0.00105 ## FixOmega 3 0 0 / 90 = 0.00000 0.00000 ## Backrub 137 200 91 / 439 = 0.20729 0.00205 ## BigBackrub 102 87 51 / 398 = 0.12814 0.00270 ## OneRotamer 0 258 118 / 1171 = 0.10077 0.00506 ## ClashingRotamer 1 3 1 / 177 = 0.00565 0.00074 ## ClusteredRotamer 15 4 2 / 143 = 0.01399 0.00081 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 210 = 0.00476 0.00013 ## CloseGap 0 19 6 / 257 = 0.02335 0.00635 ## HealGap 0 12 7 / 272 = 0.02574 0.00086 ## MoveGap 0 0 0 / 93 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 213 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 96 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 204 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 99 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 473 = 0.00000 0.00000 ## CrossOver 0 0 0 / 92 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 17 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 94 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 108 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)G42 # TweakPsiPhi removed gap before (T0547)K99 # TweakPsiPhi removed gap before (T0547)T256 # TweakPsiSubtree removed gap before (T0547)Y519 # TweakPsiPhi removed gap before (T0547)L389 # TweakPsiSubtree removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)K310 # TweakPsiSubtree removed gap before (T0547)L574 # TweakPhi removed gap before (T0547)L244 # TweakPhi removed gap before (T0547)N541 # TweakPhi removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)D393 # TweakPsiPhi removed gap before (T0547)G604 # TweakPhi removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)K370 # TweakPsiPhi removed gap before (T0547)W454 # TweakPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)R288 # TweakPhi removed gap before (T0547)I417 # TweakPsiSubtree removed gap before (T0547)E294 # TweakPhi removed gap before (T0547)K196 # TweakPsiSubtree removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)L155 # TweakPsiPhi removed gap before (T0547)R323 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)F204 # TweakPsiPhi removed gap before (T0547)I238 # TweakPsiSubtree removed gap before (T0547)E250 # TweakPsiPhi removed gap before (T0547)A146 # TweakPsiPhi removed gap before (T0547)T409 # TweakPhi removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)G92 # TweakPhi removed gap before (T0547)L430 # TweakPhi removed gap before (T0547)N80 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPsiSubtree removed gap before (T0547)I62 # TweakPsiSubtree removed gap before (T0547)S372 # TweakPhi removed gap before (T0547)M229 # TweakPhi removed gap before (T0547)K582 # TweakPhi removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)T473 # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPhi removed gap before (T0547)G126 # TweakPsiPhi removed gap before (T0547)L583 # TweakPhi removed gap before (T0547)Q448 # TweakPsiPhi removed gap before (T0547)S403 # TweakPhi removed gap before (T0547)L38 # TweakPsiPhi removed gap before (T0547)I180 # TweakPsiPhi removed gap before (T0547)D428 # TweakPsiPhi removed gap before (T0547)R467 # TweakPhi removed gap before (T0547)G262 # generation 147: best score out of 40: T0547.try1-opt2 205.57549 cost/residue, 808 clashes 0.12993 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 221 134 / 669 = 0.20030 0.00373 ## JiggleSubtree 2 44 28 / 397 = 0.07053 0.00553 ## JiggleSegment 5 55 38 / 510 = 0.07451 0.00452 ## OptSubtree 0 0 0 / 100 = 0.00000 0.00000 ## OptSegment 0 1 1 / 238 = 0.00420 0.00147 ## OptAllSegments 0 0 0 / 96 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 102 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 88 = 0.00000 0.00000 ## TweakPhiSubtree 40 405 243 / 993 = 0.24471 0.00576 ## TweakPhiSegment 43 497 307 / 1076 = 0.28532 0.00627 ## TweakPsiSubtree 1 335 232 / 1013 = 0.22902 0.00594 ## TweakPsiSegment 2 533 351 / 1372 = 0.25583 0.00761 ## TweakPsiPhiSubtree 90 364 213 / 775 = 0.27484 0.00459 ## TweakPsiPhiSegment 80 302 172 / 667 = 0.25787 0.00409 ## TweakHbondSubtree 14 251 157 / 832 = 0.18870 0.00443 ## TweakHbondSegment 13 300 166 / 845 = 0.19645 0.00483 ## TweakMultimer 201 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 22 117 74 / 259 = 0.28571 0.00104 ## FixOmega 3 0 0 / 91 = 0.00000 0.00000 ## Backrub 138 201 92 / 442 = 0.20814 0.00207 ## BigBackrub 102 87 51 / 405 = 0.12593 0.00265 ## OneRotamer 0 259 118 / 1178 = 0.10017 0.00503 ## ClashingRotamer 1 3 1 / 178 = 0.00562 0.00073 ## ClusteredRotamer 15 4 2 / 143 = 0.01399 0.00081 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 211 = 0.00474 0.00012 ## CloseGap 0 19 6 / 257 = 0.02335 0.00635 ## HealGap 0 12 7 / 273 = 0.02564 0.00086 ## MoveGap 0 0 0 / 94 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 213 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 96 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 204 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 99 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 473 = 0.00000 0.00000 ## CrossOver 0 0 0 / 92 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 17 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 94 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 108 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)I15 # TweakPsiPhi removed gap before (T0547)E12 # TweakPhi removed gap before (T0547)E548 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPhi removed gap before (T0547)T534 # TweakPsiPhi removed gap before (T0547)Y63 # TweakPhi removed gap before (T0547)N179 # TweakPhi removed gap before (T0547)K86 # TweakPsiPhi removed gap before (T0547)I417 # TweakPsiPhi removed gap before (T0547)E535 # TweakPsiPhi removed gap before (T0547)G92 # TweakPsiPhi removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)Y440 # TweakPsiPhi removed gap before (T0547)K99 # TweakPsiPhi removed gap before (T0547)K587 # TweakPsiPhi removed gap before (T0547)A189 # TweakPhi removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)D380 # TweakPsiSubtree removed gap before (T0547)N61 # TweakPsiSubtree removed gap before (T0547)V547 # TweakPsiPhi removed gap before (T0547)V35 # TweakPsiSubtree removed gap before (T0547)I23 # TweakPsiPhi removed gap before (T0547)L515 # TweakPhi removed gap before (T0547)D3 # TweakPhi removed gap before (T0547)N305 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E552 # TweakPsiPhi removed gap before (T0547)I34 # TweakPhi removed gap before (T0547)A296 # TweakPhi removed gap before (T0547)E164 # TweakPhi removed gap before (T0547)L244 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)I388 # TweakPhi removed gap before (T0547)G421 # TweakPsiPhi removed gap before (T0547)D484 # TweakPhi removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)A263 # TweakPhi removed gap before (T0547)D503 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPsiSubtree removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)L351 # generation 148: best score out of 40: T0547.try1-opt2 205.50815 cost/residue, 807 clashes 0.13044 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 221 134 / 676 = 0.19822 0.00369 ## JiggleSubtree 2 44 28 / 398 = 0.07035 0.00552 ## JiggleSegment 5 55 38 / 514 = 0.07393 0.00449 ## OptSubtree 0 0 0 / 100 = 0.00000 0.00000 ## OptSegment 0 1 1 / 239 = 0.00418 0.00147 ## OptAllSegments 0 0 0 / 96 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 103 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 89 = 0.00000 0.00000 ## TweakPhiSubtree 40 407 243 / 1000 = 0.24300 0.00572 ## TweakPhiSegment 44 503 308 / 1087 = 0.28335 0.00622 ## TweakPsiSubtree 1 337 233 / 1018 = 0.22888 0.00591 ## TweakPsiSegment 3 535 353 / 1379 = 0.25598 0.00760 ## TweakPsiPhiSubtree 91 368 215 / 784 = 0.27423 0.00456 ## TweakPsiPhiSegment 85 305 174 / 672 = 0.25893 0.00409 ## TweakHbondSubtree 14 253 158 / 840 = 0.18810 0.00447 ## TweakHbondSegment 13 301 166 / 850 = 0.19529 0.00480 ## TweakMultimer 204 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 22 121 77 / 263 = 0.29278 0.00106 ## FixOmega 3 0 0 / 91 = 0.00000 0.00000 ## Backrub 138 203 93 / 448 = 0.20759 0.00208 ## BigBackrub 103 87 51 / 408 = 0.12500 0.00263 ## OneRotamer 0 259 118 / 1185 = 0.09958 0.00500 ## ClashingRotamer 1 3 1 / 178 = 0.00562 0.00073 ## ClusteredRotamer 16 4 2 / 143 = 0.01399 0.00081 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 211 = 0.00474 0.00012 ## CloseGap 0 19 6 / 257 = 0.02335 0.00635 ## HealGap 0 12 7 / 275 = 0.02545 0.00085 ## MoveGap 0 0 0 / 96 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 214 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 96 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 204 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 99 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 474 = 0.00000 0.00000 ## CrossOver 0 0 0 / 92 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 17 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 94 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 110 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)L441 # TweakPsiSubtree removed gap before (T0547)F324 # TweakPsiPhi removed gap before (T0547)L275 # TweakPhi removed gap before (T0547)L378 # TweakPsiSubtree removed gap before (T0547)Q554 # TweakPsiPhi removed gap before (T0547)V300 # TweakPhi removed gap before (T0547)Y90 # TweakPsiSubtree removed gap before (T0547)A427 # TweakPhi removed gap before (T0547)D558 # TweakPsiPhi removed gap before (T0547)K27 # TweakPsiSubtree removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)S555 # TweakPhi removed gap before (T0547)L97 # TweakPsiSubtree removed gap before (T0547)K57 # TweakPsiPhi removed gap before (T0547)I573 # TweakPhi removed gap before (T0547)H233 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPsiSubtree removed gap before (T0547)E320 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)A214 # TweakPhi removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)S539 # TweakPsiSubtree removed gap before (T0547)T409 # TweakPhi removed gap before (T0547)L385 # TweakPsiPhi removed gap before (T0547)G92 # TweakPhi removed gap before (T0547)N61 # TweakPsiPhi removed gap before (T0547)A189 # TweakPsiSubtree removed gap before (T0547)L420 # TweakPsiSubtree removed gap before (T0547)R577 # TweakPsiSubtree removed gap before (T0547)A268 # TweakPhi removed gap before (T0547)L234 # TweakPsiSubtree removed gap before (T0547)D380 # TweakPhi removed gap before (T0547)R402 # TweakPsiPhi removed gap before (T0547)L557 # TweakPsiSubtree removed gap before (T0547)Y396 # TweakPhi removed gap before (T0547)L385 # TweakPhi removed gap before (T0547)E115 # TweakPhi removed gap before (T0547)Q56 # TweakPsiPhi removed gap before (T0547)Y104 # TweakPsiSubtree removed gap before (T0547)F392 # TweakPsiSubtree removed gap before (T0547)V300 # TweakPsiSubtree removed gap before (T0547)G524 # TweakPsiSubtree removed gap before (T0547)K587 # TweakPhi removed gap before (T0547)N249 # TweakPsiPhi removed gap before (T0547)H410 # TweakPsiSubtree removed gap before (T0547)Y396 # TweakPsiPhi removed gap before (T0547)I193 # TweakPsiSubtree removed gap before (T0547)S112 # generation 149: best score out of 40: T0547.try1-opt2 205.49312 cost/residue, 807 clashes 0.13037 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 223 135 / 681 = 0.19824 0.00369 ## JiggleSubtree 2 44 28 / 398 = 0.07035 0.00552 ## JiggleSegment 5 55 38 / 516 = 0.07364 0.00447 ## OptSubtree 0 0 0 / 101 = 0.00000 0.00000 ## OptSegment 0 1 1 / 241 = 0.00415 0.00145 ## OptAllSegments 0 0 0 / 96 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 103 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 89 = 0.00000 0.00000 ## TweakPhiSubtree 42 408 244 / 1006 = 0.24254 0.00577 ## TweakPhiSegment 44 508 309 / 1097 = 0.28168 0.00618 ## TweakPsiSubtree 1 341 235 / 1026 = 0.22904 0.00587 ## TweakPsiSegment 3 540 354 / 1395 = 0.25376 0.00752 ## TweakPsiPhiSubtree 91 368 215 / 785 = 0.27389 0.00456 ## TweakPsiPhiSegment 87 307 174 / 681 = 0.25551 0.00404 ## TweakHbondSubtree 14 255 159 / 848 = 0.18750 0.00444 ## TweakHbondSegment 14 301 166 / 855 = 0.19415 0.00478 ## TweakMultimer 208 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 23 121 77 / 265 = 0.29057 0.00105 ## FixOmega 3 0 0 / 92 = 0.00000 0.00000 ## Backrub 138 206 94 / 452 = 0.20796 0.00211 ## BigBackrub 103 87 51 / 413 = 0.12349 0.00260 ## OneRotamer 0 261 119 / 1192 = 0.09983 0.00501 ## ClashingRotamer 1 3 1 / 179 = 0.00559 0.00073 ## ClusteredRotamer 16 4 2 / 143 = 0.01399 0.00081 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 211 = 0.00474 0.00012 ## CloseGap 0 19 6 / 257 = 0.02335 0.00635 ## HealGap 0 12 7 / 276 = 0.02536 0.00085 ## MoveGap 0 0 0 / 96 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 214 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 97 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 205 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 99 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 477 = 0.00000 0.00000 ## CrossOver 0 0 0 / 92 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 17 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 95 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 110 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)L38 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)Q281 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V277 # TweakPsiPhi removed gap before (T0547)E257 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)A247 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)E278 # TweakPsiSubtree removed gap before (T0547)E561 # TweakPsiPhi removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)S492 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPhi removed gap before (T0547)F93 # TweakPhi removed gap before (T0547)L223 # TweakPsiSubtree removed gap before (T0547)I369 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)D602 # TweakPsiSubtree removed gap before (T0547)L598 # TweakPhi removed gap before (T0547)K246 # TweakPsiSubtree removed gap before (T0547)D469 # TweakPsiSubtree removed gap before (T0547)I166 # TweakPhi removed gap before (T0547)E561 # TweakPsiSubtree removed gap before (T0547)G205 # TweakPsiSubtree removed gap before (T0547)K102 # TweakPsiSubtree removed gap before (T0547)Y295 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)S579 # TweakPhi removed gap before (T0547)D486 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)I241 # TweakPsiPhi removed gap before (T0547)S381 # TweakPsiSubtree removed gap before (T0547)M450 # TweakPsiPhi removed gap before (T0547)I62 # TweakPsiPhi removed gap before (T0547)N603 # TweakPsiPhi removed gap before (T0547)G159 # TweakPhi removed gap before (T0547)D312 # TweakPsiPhi removed gap before (T0547)N179 # TweakPhi removed gap before (T0547)I382 # TweakPsiSubtree removed gap before (T0547)I167 # TweakPhi removed gap before (T0547)V82 # TweakPsiPhi removed gap before (T0547)L244 # TweakPsiSubtree removed gap before (T0547)F232 # TweakPhi removed gap before (T0547)Q433 # TweakPsiPhi removed gap before (T0547)H233 # TweakPhi removed gap before (T0547)Q400 # generation 150: best score out of 40: T0547.try1-opt2 205.46132 cost/residue, 797 clashes 0.13065 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 223 135 / 685 = 0.19708 0.00367 ## JiggleSubtree 2 44 28 / 399 = 0.07018 0.00550 ## JiggleSegment 5 55 38 / 516 = 0.07364 0.00447 ## OptSubtree 0 0 0 / 101 = 0.00000 0.00000 ## OptSegment 0 1 1 / 241 = 0.00415 0.00145 ## OptAllSegments 0 0 0 / 97 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 103 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 90 = 0.00000 0.00000 ## TweakPhiSubtree 43 412 246 / 1017 = 0.24189 0.00574 ## TweakPhiSegment 44 510 311 / 1101 = 0.28247 0.00618 ## TweakPsiSubtree 1 345 236 / 1033 = 0.22846 0.00586 ## TweakPsiSegment 3 544 355 / 1406 = 0.25249 0.00747 ## TweakPsiPhiSubtree 92 370 216 / 792 = 0.27273 0.00454 ## TweakPsiPhiSegment 88 310 175 / 686 = 0.25510 0.00405 ## TweakHbondSubtree 14 256 160 / 856 = 0.18692 0.00442 ## TweakHbondSegment 14 303 168 / 860 = 0.19535 0.00475 ## TweakMultimer 213 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 23 121 78 / 267 = 0.29213 0.00106 ## FixOmega 3 0 0 / 94 = 0.00000 0.00000 ## Backrub 142 213 96 / 463 = 0.20734 0.00217 ## BigBackrub 106 88 51 / 417 = 0.12230 0.00257 ## OneRotamer 0 261 120 / 1199 = 0.10008 0.00499 ## ClashingRotamer 1 3 1 / 179 = 0.00559 0.00073 ## ClusteredRotamer 16 4 2 / 143 = 0.01399 0.00081 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 212 = 0.00472 0.00012 ## CloseGap 0 19 6 / 257 = 0.02335 0.00635 ## HealGap 0 12 7 / 276 = 0.02536 0.00085 ## MoveGap 0 0 0 / 96 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 214 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 99 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 206 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 99 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 479 = 0.00000 0.00000 ## CrossOver 0 0 0 / 93 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 18 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 96 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 110 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)S197 # TweakPsiSubtree removed gap before (T0547)K267 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)A127 # TweakPsiPhi removed gap before (T0547)F453 # TweakPsiSubtree removed gap before (T0547)L47 # TweakPsiPhi removed gap before (T0547)E386 # TweakPsiPhi removed gap before (T0547)N124 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I145 # TweakPhi removed gap before (T0547)K102 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)E278 # TweakPsiSubtree removed gap before (T0547)K222 # TweakPsiPhi removed gap before (T0547)L365 # TweakPsiPhi removed gap before (T0547)L186 # TweakPsiPhi removed gap before (T0547)L258 # TweakPhi removed gap before (T0547)K95 # TweakPsiSubtree removed gap before (T0547)I62 # TweakPsiSubtree removed gap before (T0547)N585 # TweakPhi removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)G455 # TweakPsiSubtree removed gap before (T0547)K260 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)E37 # TweakPsiPhi removed gap before (T0547)F227 # TweakPsiSubtree removed gap before (T0547)N580 # TweakPsiPhi removed gap before (T0547)L529 # TweakPsiSubtree removed gap before (T0547)F51 # TweakPsiPhi removed gap before (T0547)H187 # TweakPsiSubtree removed gap before (T0547)S485 # TweakPhi removed gap before (T0547)M525 # TweakPhi removed gap before (T0547)V442 # TweakPhi removed gap before (T0547)K246 # TweakPsiSubtree removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)L499 # TweakPhi removed gap before (T0547)Y25 # TweakPhi removed gap before (T0547)Y90 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)D401 # TweakPhi removed gap before (T0547)I551 # TweakPsiPhi removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)N585 # TweakPsiPhi removed gap before (T0547)D383 # BackrubGuts cancelled---proline or break # generation 151: best score out of 40: T0547.try1-opt2 205.44072 cost/residue, 799 clashes 0.13062 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 225 136 / 695 = 0.19568 0.00366 ## JiggleSubtree 2 44 28 / 400 = 0.07000 0.00549 ## JiggleSegment 5 55 38 / 516 = 0.07364 0.00447 ## OptSubtree 0 0 0 / 101 = 0.00000 0.00000 ## OptSegment 0 1 1 / 241 = 0.00415 0.00145 ## OptAllSegments 0 0 0 / 99 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 103 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 90 = 0.00000 0.00000 ## TweakPhiSubtree 43 414 247 / 1025 = 0.24098 0.00572 ## TweakPhiSegment 44 514 313 / 1105 = 0.28326 0.00616 ## TweakPsiSubtree 1 348 237 / 1042 = 0.22745 0.00581 ## TweakPsiSegment 3 548 358 / 1414 = 0.25318 0.00748 ## TweakPsiPhiSubtree 94 370 216 / 798 = 0.27068 0.00451 ## TweakPsiPhiSegment 88 312 177 / 696 = 0.25431 0.00404 ## TweakHbondSubtree 14 257 160 / 860 = 0.18605 0.00440 ## TweakHbondSegment 14 304 169 / 866 = 0.19515 0.00473 ## TweakMultimer 215 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 23 124 81 / 274 = 0.29562 0.00120 ## FixOmega 3 0 0 / 95 = 0.00000 0.00000 ## Backrub 147 215 97 / 469 = 0.20682 0.00216 ## BigBackrub 107 90 51 / 421 = 0.12114 0.00255 ## OneRotamer 0 263 121 / 1206 = 0.10033 0.00497 ## ClashingRotamer 1 3 1 / 179 = 0.00559 0.00073 ## ClusteredRotamer 17 4 2 / 143 = 0.01399 0.00081 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 213 = 0.00469 0.00012 ## CloseGap 0 19 6 / 258 = 0.02326 0.00633 ## HealGap 0 12 7 / 276 = 0.02536 0.00085 ## MoveGap 0 0 0 / 96 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 214 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 99 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 207 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 100 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 480 = 0.00000 0.00000 ## CrossOver 0 0 0 / 93 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 18 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 97 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 111 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)E37 # TweakPsiSubtree removed gap before (T0547)K95 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L217 # TweakPsiPhi removed gap before (T0547)I550 # TweakPhi removed gap before (T0547)G524 # TweakPsiSubtree removed gap before (T0547)D566 # TweakPhi removed gap before (T0547)E138 # TweakPsiSubtree removed gap before (T0547)D3 # TweakPhi removed gap before (T0547)L557 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPhi removed gap before (T0547)F73 # TweakPsiPhi removed gap before (T0547)H591 # TweakPsiSubtree removed gap before (T0547)G252 # TweakPhi removed gap before (T0547)D3 # TweakPsiSubtree removed gap before (T0547)D168 # TweakPsiPhi removed gap before (T0547)L163 # TweakPsiPhi removed gap before (T0547)Q58 # TweakPsiSubtree removed gap before (T0547)L583 # TweakPsiSubtree removed gap before (T0547)I166 # TweakPhi removed gap before (T0547)G143 # TweakPsiPhi removed gap before (T0547)L337 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)G322 # TweakPsiSubtree removed gap before (T0547)R293 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)E376 # TweakPsiPhi removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPsiPhi removed gap before (T0547)L375 # TweakPsiPhi removed gap before (T0547)E470 # TweakPhi removed gap before (T0547)L292 # TweakPsiSubtree removed gap before (T0547)P29 # TweakPhi removed gap before (T0547)I145 # TweakPhi removed gap before (T0547)M2 # TweakPhi removed gap before (T0547)K506 # TweakPhi removed gap before (T0547)F513 # TweakPsiPhi removed gap before (T0547)F453 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)D602 # TweakPhi removed gap before (T0547)Y279 # TweakPhi removed gap before (T0547)L271 # TweakPsiSubtree removed gap before (T0547)I62 # TweakPsiSubtree removed gap before (T0547)L408 # TweakPsiPhi removed gap before (T0547)T228 # TweakPhi removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)Y90 # TweakPsiPhi removed gap before (T0547)V584 # TweakPhi removed gap before (T0547)G77 # TweakPsiPhi removed gap before (T0547)H233 # TweakPsiSubtree removed gap before (T0547)A327 # generation 152: best score out of 40: T0547.try1-opt2 205.31836 cost/residue, 795 clashes 0.13065 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 226 136 / 703 = 0.19346 0.00362 ## JiggleSubtree 2 44 28 / 401 = 0.06983 0.00548 ## JiggleSegment 5 55 38 / 518 = 0.07336 0.00445 ## OptSubtree 0 0 0 / 101 = 0.00000 0.00000 ## OptSegment 0 1 1 / 243 = 0.00412 0.00144 ## OptAllSegments 0 0 0 / 99 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 103 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 90 = 0.00000 0.00000 ## TweakPhiSubtree 46 418 249 / 1038 = 0.23988 0.00567 ## TweakPhiSegment 44 518 314 / 1111 = 0.28263 0.00616 ## TweakPsiSubtree 1 350 238 / 1047 = 0.22732 0.00578 ## TweakPsiSegment 3 549 359 / 1427 = 0.25158 0.00744 ## TweakPsiPhiSubtree 94 373 217 / 804 = 0.26990 0.00449 ## TweakPsiPhiSegment 88 315 179 / 704 = 0.25426 0.00402 ## TweakHbondSubtree 14 258 160 / 862 = 0.18561 0.00439 ## TweakHbondSegment 14 304 169 / 869 = 0.19448 0.00471 ## TweakMultimer 216 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 23 124 82 / 280 = 0.29286 0.00118 ## FixOmega 3 0 0 / 95 = 0.00000 0.00000 ## Backrub 147 219 97 / 478 = 0.20293 0.00212 ## BigBackrub 111 90 52 / 424 = 0.12264 0.00255 ## OneRotamer 0 265 123 / 1214 = 0.10132 0.00506 ## ClashingRotamer 1 3 1 / 179 = 0.00559 0.00073 ## ClusteredRotamer 18 4 2 / 143 = 0.01399 0.00081 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 214 = 0.00467 0.00012 ## CloseGap 0 19 6 / 258 = 0.02326 0.00633 ## HealGap 0 12 7 / 277 = 0.02527 0.00085 ## MoveGap 0 0 0 / 96 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 216 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 99 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 208 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 100 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 480 = 0.00000 0.00000 ## CrossOver 0 0 0 / 93 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 18 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 97 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 111 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)E285 # TweakPhi removed gap before (T0547)L139 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPsiPhi removed gap before (T0547)T207 # TweakPsiPhi removed gap before (T0547)E162 # TweakPsiSubtree removed gap before (T0547)L234 # TweakPhi removed gap before (T0547)L160 # TweakPsiPhi removed gap before (T0547)E162 # TweakPsiPhi removed gap before (T0547)V82 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L598 # TweakPsiPhi removed gap before (T0547)L182 # TweakPhi removed gap before (T0547)E115 # TweakPsiSubtree removed gap before (T0547)H187 # TweakPsiPhi removed gap before (T0547)F392 # TweakPsiPhi removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)W479 # TweakPsiSubtree removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiPhi removed gap before (T0547)N289 # TweakPsiSubtree removed gap before (T0547)A427 # TweakPsiSubtree removed gap before (T0547)K582 # TweakPsiPhi removed gap before (T0547)K526 # TweakPhi removed gap before (T0547)A69 # TweakPsiPhi removed gap before (T0547)A296 # TweakPsiPhi removed gap before (T0547)V331 # TweakPsiSubtree removed gap before (T0547)Q588 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L160 # TweakPhi removed gap before (T0547)I59 # TweakPsiPhi removed gap before (T0547)R577 # TweakPhi removed gap before (T0547)L244 # TweakPsiSubtree removed gap before (T0547)V300 # TweakPsiPhi removed gap before (T0547)D380 # TweakPsiPhi removed gap before (T0547)K415 # TweakPhi removed gap before (T0547)A518 # TweakPsiPhi removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)K587 # TweakPsiSubtree removed gap before (T0547)N61 # TweakPhi removed gap before (T0547)K286 # TweakPsiSubtree removed gap before (T0547)K71 # TweakPsiSubtree removed gap before (T0547)K367 # generation 153: best score out of 40: T0547.try1-opt2 205.28629 cost/residue, 795 clashes 0.13065 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 228 137 / 705 = 0.19433 0.00363 ## JiggleSubtree 2 44 28 / 402 = 0.06965 0.00546 ## JiggleSegment 5 56 38 / 519 = 0.07322 0.00444 ## OptSubtree 0 0 0 / 102 = 0.00000 0.00000 ## OptSegment 0 1 1 / 243 = 0.00412 0.00144 ## OptAllSegments 0 0 0 / 99 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 103 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 90 = 0.00000 0.00000 ## TweakPhiSubtree 46 420 250 / 1044 = 0.23946 0.00565 ## TweakPhiSegment 44 521 316 / 1117 = 0.28290 0.00614 ## TweakPsiSubtree 1 351 239 / 1054 = 0.22676 0.00576 ## TweakPsiSegment 3 551 361 / 1435 = 0.25157 0.00741 ## TweakPsiPhiSubtree 95 375 218 / 809 = 0.26947 0.00446 ## TweakPsiPhiSegment 89 320 181 / 716 = 0.25279 0.00402 ## TweakHbondSubtree 14 259 161 / 867 = 0.18570 0.00437 ## TweakHbondSegment 14 307 170 / 877 = 0.19384 0.00475 ## TweakMultimer 220 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 24 129 87 / 289 = 0.30104 0.00123 ## FixOmega 3 0 0 / 96 = 0.00000 0.00000 ## Backrub 148 222 98 / 487 = 0.20123 0.00209 ## BigBackrub 112 90 52 / 429 = 0.12121 0.00252 ## OneRotamer 0 265 123 / 1221 = 0.10074 0.00503 ## ClashingRotamer 1 3 1 / 179 = 0.00559 0.00073 ## ClusteredRotamer 18 4 2 / 144 = 0.01389 0.00080 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 214 = 0.00467 0.00012 ## CloseGap 0 19 6 / 259 = 0.02317 0.00630 ## HealGap 0 12 7 / 277 = 0.02527 0.00085 ## MoveGap 0 0 0 / 96 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 217 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 100 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 209 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 100 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 481 = 0.00000 0.00000 ## CrossOver 0 0 0 / 94 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 18 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 97 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 111 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)N201 # TweakPhi removed gap before (T0547)L217 # TweakPhi removed gap before (T0547)K36 # TweakPsiSubtree removed gap before (T0547)K353 # TweakPsiPhi removed gap before (T0547)K304 # TweakPsiSubtree removed gap before (T0547)T413 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPsiPhi removed gap before (T0547)I193 # TweakPhi removed gap before (T0547)Y565 # TweakPsiPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)A30 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A127 # TweakPhi removed gap before (T0547)A536 # TweakPsiSubtree removed gap before (T0547)Y545 # TweakPsiSubtree removed gap before (T0547)L234 # TweakPsiSubtree removed gap before (T0547)E521 # TweakPsiPhi removed gap before (T0547)I6 # TweakPsiPhi removed gap before (T0547)H151 # TweakPhi removed gap before (T0547)S202 # TweakPsiPhi removed gap before (T0547)D33 # TweakPsiSubtree removed gap before (T0547)D572 # TweakPsiSubtree removed gap before (T0547)F66 # TweakPsiSubtree removed gap before (T0547)K57 # TweakPsiPhi removed gap before (T0547)V21 # TweakPsiPhi removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)V516 # TweakPhi removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)I269 # TweakPhi removed gap before (T0547)F498 # TweakPsiPhi removed gap before (T0547)V82 # TweakPsiSubtree removed gap before (T0547)K57 # TweakPhi removed gap before (T0547)I238 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E386 # TweakPhi removed gap before (T0547)N603 # TweakPhi removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)K264 # TweakPhi removed gap before (T0547)K493 # TweakPsiSubtree removed gap before (T0547)E548 # TweakPsiSubtree removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)E26 # TweakPhi removed gap before (T0547)G181 # TweakPsiSubtree removed gap before (T0547)A147 # TweakPsiSubtree removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)N585 # TweakPsiPhi removed gap before (T0547)S477 # generation 154: best score out of 40: T0547.try1-opt2 205.28426 cost/residue, 795 clashes 0.13063 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 228 137 / 706 = 0.19405 0.00363 ## JiggleSubtree 2 44 28 / 402 = 0.06965 0.00546 ## JiggleSegment 5 57 38 / 520 = 0.07308 0.00444 ## OptSubtree 0 0 0 / 104 = 0.00000 0.00000 ## OptSegment 0 1 1 / 244 = 0.00410 0.00144 ## OptAllSegments 0 0 0 / 100 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 104 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 91 = 0.00000 0.00000 ## TweakPhiSubtree 47 426 251 / 1053 = 0.23837 0.00563 ## TweakPhiSegment 44 521 317 / 1123 = 0.28228 0.00613 ## TweakPsiSubtree 1 354 242 / 1065 = 0.22723 0.00572 ## TweakPsiSegment 3 552 361 / 1446 = 0.24965 0.00735 ## TweakPsiPhiSubtree 95 377 219 / 813 = 0.26937 0.00445 ## TweakPsiPhiSegment 91 325 182 / 725 = 0.25103 0.00397 ## TweakHbondSubtree 14 259 161 / 871 = 0.18485 0.00435 ## TweakHbondSegment 14 310 172 / 885 = 0.19435 0.00473 ## TweakMultimer 222 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 27 131 87 / 292 = 0.29795 0.00122 ## FixOmega 3 0 0 / 96 = 0.00000 0.00000 ## Backrub 149 224 98 / 490 = 0.20000 0.00208 ## BigBackrub 113 91 53 / 438 = 0.12100 0.00250 ## OneRotamer 0 268 123 / 1232 = 0.09984 0.00499 ## ClashingRotamer 1 3 1 / 179 = 0.00559 0.00073 ## ClusteredRotamer 18 4 2 / 144 = 0.01389 0.00080 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 214 = 0.00467 0.00012 ## CloseGap 0 19 6 / 259 = 0.02317 0.00630 ## HealGap 0 12 7 / 278 = 0.02518 0.00084 ## MoveGap 0 0 0 / 96 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 218 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 100 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 209 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 100 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 481 = 0.00000 0.00000 ## CrossOver 0 0 0 / 96 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 18 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 97 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 111 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)F510 # TweakPhi removed gap before (T0547)D3 # TweakPsiSubtree removed gap before (T0547)I169 # TweakPsiPhi removed gap before (T0547)L234 # TweakPsiSubtree removed gap before (T0547)S197 # TweakPhi removed gap before (T0547)K414 # TweakPsiPhi removed gap before (T0547)K353 # TweakPhi removed gap before (T0547)L100 # TweakPsiPhi removed gap before (T0547)N459 # TweakPsiSubtree removed gap before (T0547)T239 # TweakPhi removed gap before (T0547)G192 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F510 # TweakPsiSubtree removed gap before (T0547)E12 # TweakPhi removed gap before (T0547)E12 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPhi removed gap before (T0547)A30 # TweakPhi removed gap before (T0547)L497 # TweakPhi removed gap before (T0547)N249 # TweakPhi removed gap before (T0547)I169 # TweakPsiSubtree removed gap before (T0547)E552 # TweakPsiSubtree removed gap before (T0547)L116 # TweakPsiSubtree removed gap before (T0547)V336 # TweakPhi removed gap before (T0547)E376 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)R288 # TweakPhi removed gap before (T0547)K102 # TweakPsiPhi removed gap before (T0547)I417 # TweakPhi removed gap before (T0547)I382 # TweakPsiSubtree removed gap before (T0547)I359 # TweakPsiPhi removed gap before (T0547)D566 # TweakPsiSubtree removed gap before (T0547)G143 # TweakPsiSubtree removed gap before (T0547)G77 # TweakPhi removed gap before (T0547)N67 # TweakPhi removed gap before (T0547)I478 # TweakPsiPhi removed gap before (T0547)L358 # TweakPhi removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)I537 # TweakPsiPhi removed gap before (T0547)I16 # TweakPsiSubtree removed gap before (T0547)K357 # TweakPhi removed gap before (T0547)G205 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G395 # TweakPsiSubtree removed gap before (T0547)G594 # generation 155: best score out of 40: T0547.try1-opt2 205.25685 cost/residue, 797 clashes 0.13078 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 230 137 / 715 = 0.19161 0.00358 ## JiggleSubtree 2 44 28 / 402 = 0.06965 0.00546 ## JiggleSegment 5 57 38 / 521 = 0.07294 0.00443 ## OptSubtree 0 0 0 / 104 = 0.00000 0.00000 ## OptSegment 0 1 1 / 244 = 0.00410 0.00144 ## OptAllSegments 0 0 0 / 100 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 104 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 91 = 0.00000 0.00000 ## TweakPhiSubtree 49 432 253 / 1065 = 0.23756 0.00563 ## TweakPhiSegment 44 523 318 / 1129 = 0.28167 0.00610 ## TweakPsiSubtree 1 356 242 / 1073 = 0.22554 0.00568 ## TweakPsiSegment 3 555 362 / 1455 = 0.24880 0.00732 ## TweakPsiPhiSubtree 99 377 219 / 816 = 0.26838 0.00443 ## TweakPsiPhiSegment 92 328 184 / 732 = 0.25137 0.00394 ## TweakHbondSubtree 14 260 161 / 876 = 0.18379 0.00433 ## TweakHbondSegment 14 311 172 / 892 = 0.19283 0.00469 ## TweakMultimer 227 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 27 133 88 / 299 = 0.29431 0.00119 ## FixOmega 3 0 0 / 96 = 0.00000 0.00000 ## Backrub 151 224 98 / 493 = 0.19878 0.00206 ## BigBackrub 114 92 54 / 441 = 0.12245 0.00252 ## OneRotamer 0 272 124 / 1245 = 0.09960 0.00496 ## ClashingRotamer 1 3 1 / 179 = 0.00559 0.00073 ## ClusteredRotamer 18 4 2 / 144 = 0.01389 0.00080 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 214 = 0.00467 0.00012 ## CloseGap 0 19 6 / 261 = 0.02299 0.00625 ## HealGap 0 12 7 / 278 = 0.02518 0.00084 ## MoveGap 0 0 0 / 97 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 219 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 101 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 209 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 100 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 482 = 0.00000 0.00000 ## CrossOver 0 0 0 / 96 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 97 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 111 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)N425 # TweakPhi removed gap before (T0547)E115 # TweakPhi removed gap before (T0547)G126 # TweakPsiPhi removed gap before (T0547)G74 # TweakPsiSubtree removed gap before (T0547)I550 # TweakPhi removed gap before (T0547)F282 # TweakPsiPhi removed gap before (T0547)L266 # TweakPsiPhi removed gap before (T0547)H568 # TweakPhi removed gap before (T0547)M463 # TweakPsiSubtree removed gap before (T0547)F340 # TweakPsiPhi removed gap before (T0547)Y396 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPsiPhi removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)L419 # TweakPhi removed gap before (T0547)E361 # TweakPhi removed gap before (T0547)Q226 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)S555 # TweakPhi removed gap before (T0547)M229 # TweakPhi removed gap before (T0547)K36 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)K76 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPsiPhi removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)L160 # TweakPhi removed gap before (T0547)V277 # TweakPhi removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)L446 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)P464 # TweakPsiPhi removed gap before (T0547)L515 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPhi removed gap before (T0547)G262 # TweakPsiPhi removed gap before (T0547)A431 # TweakPsiPhi removed gap before (T0547)I570 # TweakPsiSubtree removed gap before (T0547)V82 # TweakPsiPhi removed gap before (T0547)N270 # TweakPsiPhi removed gap before (T0547)L358 # TweakPhi removed gap before (T0547)S581 # TweakPsiPhi removed gap before (T0547)T473 # TweakPsiSubtree removed gap before (T0547)A536 # TweakPsiPhi removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)V277 # TweakPsiPhi removed gap before (T0547)E507 # generation 156: best score out of 40: T0547.try1-opt2 205.25447 cost/residue, 802 clashes 0.12929 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 232 139 / 719 = 0.19332 0.00363 ## JiggleSubtree 2 44 28 / 403 = 0.06948 0.00545 ## JiggleSegment 5 57 38 / 522 = 0.07280 0.00442 ## OptSubtree 0 0 0 / 104 = 0.00000 0.00000 ## OptSegment 0 1 1 / 244 = 0.00410 0.00144 ## OptAllSegments 0 0 0 / 100 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 105 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 92 = 0.00000 0.00000 ## TweakPhiSubtree 50 434 254 / 1072 = 0.23694 0.00563 ## TweakPhiSegment 44 531 320 / 1139 = 0.28095 0.00605 ## TweakPsiSubtree 1 357 243 / 1075 = 0.22605 0.00567 ## TweakPsiSegment 3 558 365 / 1465 = 0.24915 0.00730 ## TweakPsiPhiSubtree 99 380 221 / 824 = 0.26820 0.00440 ## TweakPsiPhiSegment 94 331 184 / 741 = 0.24831 0.00389 ## TweakHbondSubtree 14 260 161 / 877 = 0.18358 0.00432 ## TweakHbondSegment 14 313 175 / 902 = 0.19401 0.00468 ## TweakMultimer 231 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 28 135 89 / 305 = 0.29180 0.00117 ## FixOmega 3 0 0 / 97 = 0.00000 0.00000 ## Backrub 152 225 99 / 498 = 0.19880 0.00209 ## BigBackrub 116 93 54 / 444 = 0.12162 0.00251 ## OneRotamer 0 273 125 / 1254 = 0.09968 0.00492 ## ClashingRotamer 1 3 1 / 179 = 0.00559 0.00073 ## ClusteredRotamer 18 4 2 / 144 = 0.01389 0.00080 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 214 = 0.00467 0.00012 ## CloseGap 0 19 6 / 261 = 0.02299 0.00625 ## HealGap 0 12 7 / 278 = 0.02518 0.00084 ## MoveGap 0 0 0 / 101 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 219 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 101 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 209 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 102 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 486 = 0.00000 0.00000 ## CrossOver 0 0 0 / 97 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 97 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 111 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)E470 # TweakPsiPhi removed gap before (T0547)W454 # TweakPhi removed gap before (T0547)S341 # TweakPsiPhi removed gap before (T0547)F51 # TweakPsiSubtree removed gap before (T0547)A536 # TweakPhi removed gap before (T0547)V436 # TweakPhi removed gap before (T0547)L378 # TweakPhi removed gap before (T0547)N585 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)I388 # TweakPsiPhi removed gap before (T0547)A119 # TweakPsiSubtree removed gap before (T0547)I153 # TweakPsiSubtree removed gap before (T0547)Y104 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPhi removed gap before (T0547)F530 # TweakPhi removed gap before (T0547)Y295 # TweakPhi removed gap before (T0547)E470 # TweakPsiPhi removed gap before (T0547)F513 # TweakPhi removed gap before (T0547)K582 # TweakPhi removed gap before (T0547)W9 # TweakPsiSubtree removed gap before (T0547)I537 # TweakPhi removed gap before (T0547)L303 # TweakPhi removed gap before (T0547)A251 # TweakPsiSubtree removed gap before (T0547)K286 # TweakPsiSubtree removed gap before (T0547)Q520 # TweakPsiPhi removed gap before (T0547)D401 # TweakPsiSubtree removed gap before (T0547)V277 # TweakPsiSubtree removed gap before (T0547)G159 # TweakPsiSubtree removed gap before (T0547)N67 # TweakPsiSubtree removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)I59 # TweakPsiPhi removed gap before (T0547)V442 # TweakPsiSubtree removed gap before (T0547)T209 # TweakPsiSubtree removed gap before (T0547)I556 # TweakPsiPhi removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)P451 # TweakPhi removed gap before (T0547)D428 # TweakPsiPhi removed gap before (T0547)N253 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)F301 # TweakPsiSubtree removed gap before (T0547)K423 # TweakPsiPhi removed gap before (T0547)F447 # TweakPsiSubtree removed gap before (T0547)K267 # TweakPhi removed gap before (T0547)Q89 # TweakPsiPhi removed gap before (T0547)F530 # TweakPhi removed gap before (T0547)N253 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I319 # TweakPsiSubtree removed gap before (T0547)A81 # generation 157: best score out of 40: T0547.try1-opt2 205.18738 cost/residue, 801 clashes 0.13053 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 233 139 / 726 = 0.19146 0.00359 ## JiggleSubtree 2 44 28 / 403 = 0.06948 0.00545 ## JiggleSegment 5 57 38 / 523 = 0.07266 0.00441 ## OptSubtree 0 0 0 / 104 = 0.00000 0.00000 ## OptSegment 0 1 1 / 244 = 0.00410 0.00144 ## OptAllSegments 0 0 0 / 100 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 107 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 92 = 0.00000 0.00000 ## TweakPhiSubtree 50 437 255 / 1083 = 0.23546 0.00557 ## TweakPhiSegment 44 532 321 / 1142 = 0.28109 0.00603 ## TweakPsiSubtree 1 362 248 / 1087 = 0.22815 0.00569 ## TweakPsiSegment 3 562 366 / 1478 = 0.24763 0.00724 ## TweakPsiPhiSubtree 99 383 224 / 833 = 0.26891 0.00442 ## TweakPsiPhiSegment 95 332 184 / 745 = 0.24698 0.00387 ## TweakHbondSubtree 14 260 161 / 879 = 0.18316 0.00431 ## TweakHbondSegment 14 319 178 / 915 = 0.19454 0.00465 ## TweakMultimer 234 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 30 135 90 / 307 = 0.29316 0.00119 ## FixOmega 3 0 0 / 98 = 0.00000 0.00000 ## Backrub 154 227 100 / 501 = 0.19960 0.00209 ## BigBackrub 116 94 55 / 449 = 0.12249 0.00255 ## OneRotamer 0 274 126 / 1259 = 0.10008 0.00490 ## ClashingRotamer 1 3 1 / 179 = 0.00559 0.00073 ## ClusteredRotamer 18 4 2 / 145 = 0.01379 0.00079 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 214 = 0.00467 0.00012 ## CloseGap 0 19 6 / 261 = 0.02299 0.00625 ## HealGap 0 12 7 / 278 = 0.02518 0.00084 ## MoveGap 0 0 0 / 101 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 220 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 101 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 210 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 102 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 489 = 0.00000 0.00000 ## CrossOver 0 0 0 / 97 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 98 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 111 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPsiPhi removed gap before (T0547)L497 # TweakPsiPhi removed gap before (T0547)I556 # TweakPsiPhi removed gap before (T0547)Y366 # TweakPsiSubtree removed gap before (T0547)K171 # TweakPsiSubtree removed gap before (T0547)K177 # TweakPhi removed gap before (T0547)L303 # TweakPhi removed gap before (T0547)G77 # TweakPsiSubtree removed gap before (T0547)I153 # TweakPsiSubtree removed gap before (T0547)D316 # TweakPhi removed gap before (T0547)H532 # TweakPhi removed gap before (T0547)L574 # TweakPsiSubtree removed gap before (T0547)N443 # TweakPhi removed gap before (T0547)I166 # TweakPsiPhi removed gap before (T0547)K36 # TweakPsiPhi removed gap before (T0547)E552 # TweakPhi removed gap before (T0547)Q458 # TweakPsiSubtree removed gap before (T0547)L574 # TweakPsiSubtree removed gap before (T0547)G64 # TweakPsiSubtree removed gap before (T0547)K506 # TweakPsiSubtree removed gap before (T0547)P315 # TweakPsiSubtree removed gap before (T0547)S539 # TweakPhi removed gap before (T0547)R50 # TweakPsiPhi removed gap before (T0547)D572 # TweakPsiSubtree removed gap before (T0547)Y279 # TweakPsiPhi removed gap before (T0547)I317 # TweakPsiPhi removed gap before (T0547)G421 # TweakPsiPhi removed gap before (T0547)Y366 # TweakPsiSubtree removed gap before (T0547)I609 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E240 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)S341 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)S403 # TweakPsiSubtree removed gap before (T0547)S368 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)R50 # TweakPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)V35 # TweakPsiSubtree removed gap before (T0547)K171 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L100 # TweakPhi removed gap before (T0547)H500 # TweakPhi removed gap before (T0547)K589 # TweakPsiSubtree removed gap before (T0547)L497 # TweakPhi removed gap before (T0547)E148 # generation 158: best score out of 40: T0547.try1-opt2 205.18021 cost/residue, 801 clashes 0.13053 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 234 140 / 730 = 0.19178 0.00359 ## JiggleSubtree 2 44 28 / 403 = 0.06948 0.00545 ## JiggleSegment 5 57 38 / 525 = 0.07238 0.00439 ## OptSubtree 0 0 0 / 104 = 0.00000 0.00000 ## OptSegment 0 1 1 / 244 = 0.00410 0.00144 ## OptAllSegments 0 0 0 / 101 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 107 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 94 = 0.00000 0.00000 ## TweakPhiSubtree 50 441 258 / 1091 = 0.23648 0.00556 ## TweakPhiSegment 44 533 323 / 1146 = 0.28185 0.00603 ## TweakPsiSubtree 1 365 248 / 1100 = 0.22545 0.00562 ## TweakPsiSegment 3 566 368 / 1488 = 0.24731 0.00720 ## TweakPsiPhiSubtree 99 386 228 / 841 = 0.27111 0.00447 ## TweakPsiPhiSegment 96 333 184 / 750 = 0.24533 0.00384 ## TweakHbondSubtree 14 260 161 / 882 = 0.18254 0.00430 ## TweakHbondSegment 14 320 178 / 919 = 0.19369 0.00463 ## TweakMultimer 235 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 31 136 91 / 314 = 0.28981 0.00118 ## FixOmega 3 0 0 / 99 = 0.00000 0.00000 ## Backrub 156 229 102 / 507 = 0.20118 0.00208 ## BigBackrub 119 96 55 / 455 = 0.12088 0.00251 ## OneRotamer 0 275 126 / 1268 = 0.09937 0.00487 ## ClashingRotamer 1 3 1 / 180 = 0.00556 0.00073 ## ClusteredRotamer 18 4 2 / 146 = 0.01370 0.00079 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 215 = 0.00465 0.00012 ## CloseGap 0 19 6 / 261 = 0.02299 0.00625 ## HealGap 0 12 7 / 279 = 0.02509 0.00084 ## MoveGap 0 0 0 / 101 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 220 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 101 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 211 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 102 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 490 = 0.00000 0.00000 ## CrossOver 0 0 0 / 97 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 99 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 111 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)D7 # TweakPhi removed gap before (T0547)G395 # TweakPsiPhi removed gap before (T0547)I167 # TweakPhi removed gap before (T0547)H527 # TweakPsiPhi removed gap before (T0547)L85 # TweakPsiSubtree removed gap before (T0547)D312 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPsiSubtree removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)I317 # TweakPsiSubtree removed gap before (T0547)I212 # TweakPsiSubtree removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)F498 # TweakPsiSubtree removed gap before (T0547)S581 # TweakPhi removed gap before (T0547)A536 # TweakPsiSubtree removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPhi removed gap before (T0547)V547 # TweakPhi removed gap before (T0547)V300 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPhi removed gap before (T0547)H233 # TweakPhi removed gap before (T0547)K267 # TweakPsiPhi removed gap before (T0547)F498 # TweakPsiSubtree removed gap before (T0547)L332 # TweakPsiSubtree removed gap before (T0547)L557 # TweakPhi removed gap before (T0547)N67 # TweakPsiPhi removed gap before (T0547)F232 # TweakPsiPhi removed gap before (T0547)N253 # TweakPsiPhi removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)A165 # TweakPhi removed gap before (T0547)S321 # TweakPsiSubtree removed gap before (T0547)Y519 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)Q237 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPhi removed gap before (T0547)D136 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)R402 # TweakPsiPhi removed gap before (T0547)V94 # TweakPsiPhi removed gap before (T0547)G181 # TweakPhi removed gap before (T0547)Y396 # TweakPhi removed gap before (T0547)G322 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPhi removed gap before (T0547)A263 # TweakPsiPhi removed gap before (T0547)S608 # TweakPsiPhi removed gap before (T0547)K607 # generation 159: best score out of 40: T0547.try1-opt2 205.05588 cost/residue, 789 clashes 0.13078 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 236 144 / 734 = 0.19619 0.00367 ## JiggleSubtree 2 44 28 / 403 = 0.06948 0.00545 ## JiggleSegment 5 57 38 / 527 = 0.07211 0.00438 ## OptSubtree 0 0 0 / 104 = 0.00000 0.00000 ## OptSegment 0 1 1 / 244 = 0.00410 0.00144 ## OptAllSegments 0 0 0 / 101 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 107 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 95 = 0.00000 0.00000 ## TweakPhiSubtree 50 444 260 / 1100 = 0.23636 0.00570 ## TweakPhiSegment 44 538 328 / 1153 = 0.28448 0.00603 ## TweakPsiSubtree 1 367 250 / 1109 = 0.22543 0.00563 ## TweakPsiSegment 3 569 369 / 1499 = 0.24616 0.00715 ## TweakPsiPhiSubtree 100 390 230 / 848 = 0.27123 0.00450 ## TweakPsiPhiSegment 98 338 185 / 757 = 0.24439 0.00382 ## TweakHbondSubtree 14 262 163 / 886 = 0.18397 0.00429 ## TweakHbondSegment 14 322 179 / 930 = 0.19247 0.00461 ## TweakMultimer 238 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 31 137 91 / 318 = 0.28616 0.00117 ## FixOmega 3 0 0 / 100 = 0.00000 0.00000 ## Backrub 156 231 104 / 511 = 0.20352 0.00208 ## BigBackrub 120 96 55 / 460 = 0.11957 0.00249 ## OneRotamer 0 276 128 / 1275 = 0.10039 0.00500 ## ClashingRotamer 1 3 1 / 180 = 0.00556 0.00073 ## ClusteredRotamer 18 4 2 / 146 = 0.01370 0.00079 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 216 = 0.00463 0.00012 ## CloseGap 0 19 6 / 262 = 0.02290 0.00623 ## HealGap 0 12 7 / 279 = 0.02509 0.00084 ## MoveGap 0 0 0 / 101 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 222 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 101 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 211 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 103 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 492 = 0.00000 0.00000 ## CrossOver 0 0 0 / 97 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 99 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 111 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)R474 # TweakPsiSubtree removed gap before (T0547)D41 # TweakPsiPhi removed gap before (T0547)A127 # TweakPsiPhi removed gap before (T0547)R577 # TweakPhi removed gap before (T0547)I140 # TweakPhi removed gap before (T0547)K352 # TweakPsiSubtree removed gap before (T0547)G111 # TweakPsiSubtree removed gap before (T0547)R439 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPsiSubtree removed gap before (T0547)T482 # TweakPsiSubtree removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)K582 # TweakPsiSubtree removed gap before (T0547)L139 # TweakPhi removed gap before (T0547)T256 # TweakPhi removed gap before (T0547)D380 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPsiSubtree removed gap before (T0547)I23 # TweakPhi removed gap before (T0547)L271 # TweakPhi removed gap before (T0547)L155 # TweakPsiPhi removed gap before (T0547)Y440 # TweakPsiSubtree removed gap before (T0547)G421 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPsiSubtree removed gap before (T0547)L385 # TweakPsiPhi removed gap before (T0547)T409 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPhi removed gap before (T0547)D558 # TweakPsiPhi removed gap before (T0547)L419 # TweakPsiSubtree removed gap before (T0547)S581 # TweakPhi removed gap before (T0547)N124 # TweakPhi removed gap before (T0547)I34 # TweakPsiPhi removed gap before (T0547)R185 # TweakPhi removed gap before (T0547)L557 # TweakPsiSubtree removed gap before (T0547)L163 # TweakPhi removed gap before (T0547)L598 # TweakPhi removed gap before (T0547)G512 # TweakPhi removed gap before (T0547)K219 # TweakPsiPhi removed gap before (T0547)W194 # TweakPsiSubtree removed gap before (T0547)L378 # generation 160: best score out of 40: T0547.try1-opt2 205.05562 cost/residue, 789 clashes 0.13078 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 239 146 / 746 = 0.19571 0.00362 ## JiggleSubtree 2 45 29 / 405 = 0.07160 0.00544 ## JiggleSegment 5 57 38 / 527 = 0.07211 0.00438 ## OptSubtree 0 0 0 / 105 = 0.00000 0.00000 ## OptSegment 0 1 1 / 244 = 0.00410 0.00144 ## OptAllSegments 0 0 0 / 101 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 107 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 96 = 0.00000 0.00000 ## TweakPhiSubtree 51 452 264 / 1114 = 0.23698 0.00569 ## TweakPhiSegment 44 540 328 / 1159 = 0.28300 0.00600 ## TweakPsiSubtree 1 369 252 / 1118 = 0.22540 0.00561 ## TweakPsiSegment 3 570 370 / 1506 = 0.24568 0.00711 ## TweakPsiPhiSubtree 101 393 232 / 853 = 0.27198 0.00451 ## TweakPsiPhiSegment 100 339 186 / 761 = 0.24442 0.00383 ## TweakHbondSubtree 14 263 164 / 891 = 0.18406 0.00431 ## TweakHbondSegment 14 322 179 / 937 = 0.19104 0.00458 ## TweakMultimer 241 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 31 138 91 / 320 = 0.28437 0.00116 ## FixOmega 3 0 0 / 100 = 0.00000 0.00000 ## Backrub 156 234 105 / 516 = 0.20349 0.00207 ## BigBackrub 120 96 55 / 461 = 0.11931 0.00248 ## OneRotamer 0 277 130 / 1284 = 0.10125 0.00499 ## ClashingRotamer 1 3 1 / 180 = 0.00556 0.00073 ## ClusteredRotamer 18 4 2 / 146 = 0.01370 0.00079 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 216 = 0.00463 0.00012 ## CloseGap 0 19 6 / 263 = 0.02281 0.00621 ## HealGap 0 12 7 / 279 = 0.02509 0.00084 ## MoveGap 0 0 0 / 102 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 223 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 101 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 211 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 103 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 495 = 0.00000 0.00000 ## CrossOver 0 0 0 / 97 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 101 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 113 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)R185 # TweakPhi removed gap before (T0547)S387 # TweakPsiPhi removed gap before (T0547)L38 # TweakPhi removed gap before (T0547)H151 # TweakPhi removed gap before (T0547)Y519 # TweakPhi removed gap before (T0547)V522 # TweakPsiPhi removed gap before (T0547)C483 # TweakPsiPhi removed gap before (T0547)D428 # TweakPsiSubtree removed gap before (T0547)Y83 # TweakPsiSubtree removed gap before (T0547)M450 # TweakPsiPhi removed gap before (T0547)Q458 # TweakPsiPhi removed gap before (T0547)V522 # TweakPsiPhi removed gap before (T0547)A146 # TweakPhi removed gap before (T0547)E164 # TweakPhi removed gap before (T0547)S387 # TweakPsiPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)I142 # TweakPhi removed gap before (T0547)Y440 # TweakPhi removed gap before (T0547)E278 # TweakPsiPhi removed gap before (T0547)L100 # TweakPsiSubtree removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)L515 # TweakPhi removed gap before (T0547)L217 # TweakPhi removed gap before (T0547)E125 # TweakPhi removed gap before (T0547)R288 # TweakPhi removed gap before (T0547)V502 # TweakPsiPhi removed gap before (T0547)H591 # TweakPhi removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)S581 # TweakPsiPhi removed gap before (T0547)E576 # TweakPsiPhi removed gap before (T0547)L511 # TweakPsiPhi removed gap before (T0547)F498 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I32 # TweakPhi removed gap before (T0547)L186 # TweakPsiSubtree removed gap before (T0547)I319 # TweakPsiPhi removed gap before (T0547)V299 # TweakPsiPhi removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)Q554 # TweakPsiPhi removed gap before (T0547)D33 # TweakPhi removed gap before (T0547)V21 # TweakPsiSubtree removed gap before (T0547)D434 # TweakPsiPhi removed gap before (T0547)A276 # generation 161: best score out of 40: T0547.try1-opt2 204.98781 cost/residue, 789 clashes 0.13077 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 243 149 / 754 = 0.19761 0.00370 ## JiggleSubtree 2 45 29 / 407 = 0.07125 0.00541 ## JiggleSegment 5 57 38 / 527 = 0.07211 0.00438 ## OptSubtree 0 0 0 / 105 = 0.00000 0.00000 ## OptSegment 0 1 1 / 244 = 0.00410 0.00144 ## OptAllSegments 0 0 0 / 101 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 107 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 96 = 0.00000 0.00000 ## TweakPhiSubtree 52 456 266 / 1126 = 0.23623 0.00567 ## TweakPhiSegment 44 543 331 / 1168 = 0.28339 0.00597 ## TweakPsiSubtree 1 372 254 / 1123 = 0.22618 0.00560 ## TweakPsiSegment 3 571 372 / 1509 = 0.24652 0.00711 ## TweakPsiPhiSubtree 104 398 239 / 867 = 0.27566 0.00450 ## TweakPsiPhiSegment 100 340 188 / 764 = 0.24607 0.00385 ## TweakHbondSubtree 14 265 164 / 898 = 0.18263 0.00428 ## TweakHbondSegment 14 324 180 / 942 = 0.19108 0.00459 ## TweakMultimer 243 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 35 140 93 / 324 = 0.28704 0.00120 ## FixOmega 3 0 0 / 100 = 0.00000 0.00000 ## Backrub 157 235 106 / 519 = 0.20424 0.00206 ## BigBackrub 120 97 55 / 463 = 0.11879 0.00247 ## OneRotamer 0 281 132 / 1300 = 0.10154 0.00503 ## ClashingRotamer 1 3 1 / 180 = 0.00556 0.00073 ## ClusteredRotamer 18 4 2 / 146 = 0.01370 0.00079 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 217 = 0.00461 0.00012 ## CloseGap 0 19 6 / 263 = 0.02281 0.00621 ## HealGap 0 12 7 / 279 = 0.02509 0.00084 ## MoveGap 0 0 0 / 103 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 225 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 102 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 211 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 103 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 496 = 0.00000 0.00000 ## CrossOver 0 0 0 / 98 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 101 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 113 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPhi removed gap before (T0547)V442 # TweakPsiPhi removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)R288 # TweakPsiPhi removed gap before (T0547)L234 # TweakPsiPhi removed gap before (T0547)F510 # TweakPsiSubtree removed gap before (T0547)A119 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPsiPhi removed gap before (T0547)G610 # TweakPhi removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)T531 # TweakPsiSubtree removed gap before (T0547)I550 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPsiPhi removed gap before (T0547)E546 # TweakPhi removed gap before (T0547)N80 # TweakPsiSubtree removed gap before (T0547)A416 # TweakPsiPhi removed gap before (T0547)Q342 # TweakPsiPhi removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)D312 # TweakPsiSubtree removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)G604 # TweakPhi removed gap before (T0547)E314 # TweakPsiPhi removed gap before (T0547)E115 # TweakPhi removed gap before (T0547)Y83 # TweakPhi removed gap before (T0547)L248 # TweakPsiSubtree removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)L362 # TweakPsiSubtree removed gap before (T0547)I556 # TweakPsiPhi removed gap before (T0547)I306 # TweakPhi removed gap before (T0547)L419 # TweakPsiPhi removed gap before (T0547)A81 # TweakPhi removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)D422 # TweakPsiSubtree removed gap before (T0547)I609 # TweakPhi removed gap before (T0547)Q437 # TweakPhi removed gap before (T0547)D484 # TweakPhi removed gap before (T0547)I369 # TweakPhi removed gap before (T0547)I540 # TweakPhi removed gap before (T0547)Q89 # TweakPsiSubtree removed gap before (T0547)L441 # generation 162: best score out of 40: T0547.try1-opt2 204.84314 cost/residue, 785 clashes 0.13077 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 247 152 / 766 = 0.19843 0.00366 ## JiggleSubtree 2 45 29 / 413 = 0.07022 0.00533 ## JiggleSegment 5 57 38 / 527 = 0.07211 0.00438 ## OptSubtree 0 0 0 / 105 = 0.00000 0.00000 ## OptSegment 0 1 1 / 244 = 0.00410 0.00144 ## OptAllSegments 0 0 0 / 101 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 107 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 96 = 0.00000 0.00000 ## TweakPhiSubtree 53 460 269 / 1138 = 0.23638 0.00563 ## TweakPhiSegment 44 545 331 / 1173 = 0.28218 0.00594 ## TweakPsiSubtree 1 375 254 / 1131 = 0.22458 0.00556 ## TweakPsiSegment 3 577 377 / 1520 = 0.24803 0.00711 ## TweakPsiPhiSubtree 105 400 240 / 873 = 0.27491 0.00448 ## TweakPsiPhiSegment 101 341 189 / 769 = 0.24577 0.00382 ## TweakHbondSubtree 14 266 165 / 901 = 0.18313 0.00431 ## TweakHbondSegment 14 324 180 / 945 = 0.19048 0.00457 ## TweakMultimer 243 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 35 144 95 / 331 = 0.28701 0.00122 ## FixOmega 3 0 0 / 101 = 0.00000 0.00000 ## Backrub 157 235 106 / 520 = 0.20385 0.00205 ## BigBackrub 120 97 55 / 466 = 0.11803 0.00245 ## OneRotamer 0 284 134 / 1313 = 0.10206 0.00509 ## ClashingRotamer 1 3 1 / 181 = 0.00552 0.00072 ## ClusteredRotamer 18 4 2 / 146 = 0.01370 0.00079 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 217 = 0.00461 0.00012 ## CloseGap 0 19 6 / 263 = 0.02281 0.00621 ## HealGap 0 12 7 / 280 = 0.02500 0.00084 ## MoveGap 0 0 0 / 103 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 225 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 103 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 211 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 103 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 497 = 0.00000 0.00000 ## CrossOver 0 0 0 / 98 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 101 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 113 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)E72 # TweakPhi removed gap before (T0547)A263 # TweakPsiPhi removed gap before (T0547)S208 # TweakPsiPhi removed gap before (T0547)K20 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)V215 # TweakPsiSubtree removed gap before (T0547)Y491 # TweakPhi removed gap before (T0547)I417 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPsiPhi removed gap before (T0547)E225 # TweakPsiSubtree removed gap before (T0547)P243 # TweakPhi removed gap before (T0547)I382 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)F227 # TweakPsiPhi removed gap before (T0547)E576 # TweakPsiPhi removed gap before (T0547)E12 # TweakPhi removed gap before (T0547)F453 # TweakPsiSubtree removed gap before (T0547)E12 # TweakPsiPhi removed gap before (T0547)Q448 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPhi removed gap before (T0547)I32 # TweakPsiPhi removed gap before (T0547)V191 # TweakPsiPhi removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)Q588 # TweakPsiSubtree removed gap before (T0547)F340 # TweakPsiPhi removed gap before (T0547)I570 # TweakPsiSubtree removed gap before (T0547)I167 # TweakPsiSubtree removed gap before (T0547)D428 # TweakPsiSubtree removed gap before (T0547)E225 # TweakPhi removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)N152 # TweakPsiSubtree removed gap before (T0547)R288 # TweakPhi removed gap before (T0547)D298 # TweakPhi removed gap before (T0547)Y290 # TweakPhi removed gap before (T0547)L523 # TweakPsiSubtree removed gap before (T0547)G610 # TweakPhi removed gap before (T0547)V191 # TweakPsiPhi removed gap before (T0547)L430 # TweakPsiPhi removed gap before (T0547)A189 # TweakPsiSubtree removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)F444 # TweakPsiPhi removed gap before (T0547)L47 # TweakPhi removed gap before (T0547)I16 # generation 163: best score out of 40: T0547.try1-opt2 204.82152 cost/residue, 785 clashes 0.13077 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 248 155 / 773 = 0.20052 0.00366 ## JiggleSubtree 2 45 29 / 414 = 0.07005 0.00532 ## JiggleSegment 5 57 38 / 528 = 0.07197 0.00437 ## OptSubtree 0 0 0 / 105 = 0.00000 0.00000 ## OptSegment 0 1 1 / 244 = 0.00410 0.00144 ## OptAllSegments 0 0 0 / 101 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 107 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 96 = 0.00000 0.00000 ## TweakPhiSubtree 54 462 270 / 1146 = 0.23560 0.00563 ## TweakPhiSegment 44 549 332 / 1181 = 0.28112 0.00590 ## TweakPsiSubtree 1 376 254 / 1136 = 0.22359 0.00553 ## TweakPsiSegment 3 582 378 / 1529 = 0.24722 0.00707 ## TweakPsiPhiSubtree 105 404 242 / 883 = 0.27407 0.00453 ## TweakPsiPhiSegment 101 343 192 / 776 = 0.24742 0.00381 ## TweakHbondSubtree 14 269 167 / 907 = 0.18412 0.00432 ## TweakHbondSegment 14 324 180 / 948 = 0.18987 0.00456 ## TweakMultimer 246 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 35 147 95 / 336 = 0.28274 0.00120 ## FixOmega 3 0 0 / 101 = 0.00000 0.00000 ## Backrub 157 237 107 / 524 = 0.20420 0.00206 ## BigBackrub 122 97 55 / 467 = 0.11777 0.00245 ## OneRotamer 0 287 134 / 1330 = 0.10075 0.00503 ## ClashingRotamer 1 3 1 / 182 = 0.00549 0.00072 ## ClusteredRotamer 18 4 2 / 146 = 0.01370 0.00079 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 217 = 0.00461 0.00012 ## CloseGap 0 19 6 / 265 = 0.02264 0.00616 ## HealGap 0 12 7 / 280 = 0.02500 0.00084 ## MoveGap 0 0 0 / 103 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 225 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 104 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 212 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 103 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 499 = 0.00000 0.00000 ## CrossOver 0 0 0 / 98 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 101 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 114 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)E457 # TweakPsiPhi removed gap before (T0547)L38 # TweakPsiPhi removed gap before (T0547)F318 # TweakPhi removed gap before (T0547)E172 # TweakPsiPhi removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)E361 # TweakPsiPhi removed gap before (T0547)E220 # TweakPsiPhi removed gap before (T0547)V331 # TweakPhi removed gap before (T0547)V94 # TweakPsiPhi removed gap before (T0547)A296 # TweakPsiPhi removed gap before (T0547)L515 # TweakPsiPhi removed gap before (T0547)F301 # TweakPhi removed gap before (T0547)Q520 # TweakPsiSubtree removed gap before (T0547)G19 # TweakPhi removed gap before (T0547)L418 # TweakPsiPhi removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)E213 # TweakPhi removed gap before (T0547)K86 # TweakPsiPhi removed gap before (T0547)H410 # TweakPsiPhi removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)E26 # TweakPsiSubtree removed gap before (T0547)Q342 # TweakPsiSubtree removed gap before (T0547)K311 # TweakPhi removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)I592 # TweakPhi removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPhi removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPsiSubtree removed gap before (T0547)Y279 # TweakPsiPhi removed gap before (T0547)S608 # TweakPsiSubtree removed gap before (T0547)P472 # TweakPhi removed gap before (T0547)I609 # TweakPhi removed gap before (T0547)D168 # TweakPhi removed gap before (T0547)V277 # TweakPsiPhi removed gap before (T0547)N61 # TweakPsiPhi removed gap before (T0547)H233 # TweakPhi removed gap before (T0547)E320 # TweakPhi removed gap before (T0547)A431 # TweakPhi removed gap before (T0547)G205 # TweakPsiPhi removed gap before (T0547)A119 # TweakPsiPhi removed gap before (T0547)G111 # TweakPhi removed gap before (T0547)W454 # TweakPsiSubtree removed gap before (T0547)F282 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K95 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)S485 # TweakPhi removed gap before (T0547)A121 # generation 164: best score out of 40: T0547.try1-opt2 204.77902 cost/residue, 784 clashes 0.13081 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 251 157 / 782 = 0.20077 0.00365 ## JiggleSubtree 2 45 29 / 415 = 0.06988 0.00531 ## JiggleSegment 5 57 38 / 529 = 0.07183 0.00436 ## OptSubtree 0 0 0 / 105 = 0.00000 0.00000 ## OptSegment 0 1 1 / 244 = 0.00410 0.00144 ## OptAllSegments 0 0 0 / 101 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 107 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 96 = 0.00000 0.00000 ## TweakPhiSubtree 54 467 275 / 1161 = 0.23686 0.00565 ## TweakPhiSegment 44 552 335 / 1189 = 0.28175 0.00591 ## TweakPsiSubtree 1 378 256 / 1140 = 0.22456 0.00555 ## TweakPsiSegment 3 583 379 / 1535 = 0.24691 0.00704 ## TweakPsiPhiSubtree 107 408 243 / 896 = 0.27121 0.00446 ## TweakPsiPhiSegment 101 347 194 / 781 = 0.24840 0.00388 ## TweakHbondSubtree 14 271 168 / 919 = 0.18281 0.00429 ## TweakHbondSegment 14 325 181 / 953 = 0.18993 0.00454 ## TweakMultimer 248 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 36 149 97 / 339 = 0.28614 0.00120 ## FixOmega 3 0 0 / 101 = 0.00000 0.00000 ## Backrub 158 237 107 / 525 = 0.20381 0.00206 ## BigBackrub 123 97 55 / 468 = 0.11752 0.00244 ## OneRotamer 0 291 137 / 1342 = 0.10209 0.00503 ## ClashingRotamer 1 3 1 / 182 = 0.00549 0.00072 ## ClusteredRotamer 18 4 2 / 146 = 0.01370 0.00079 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 217 = 0.00461 0.00012 ## CloseGap 0 19 6 / 265 = 0.02264 0.00616 ## HealGap 0 12 7 / 281 = 0.02491 0.00083 ## MoveGap 0 0 0 / 103 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 227 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 104 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 213 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 103 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 499 = 0.00000 0.00000 ## CrossOver 0 0 0 / 98 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 101 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 114 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPsiPhi removed gap before (T0547)A330 # TweakPhi removed gap before (T0547)V21 # TweakPsiPhi removed gap before (T0547)L224 # TweakPhi removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)L499 # TweakPhi removed gap before (T0547)L375 # TweakPsiPhi removed gap before (T0547)K171 # TweakPhi removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)E162 # TweakPhi removed gap before (T0547)K135 # TweakPhi removed gap before (T0547)K20 # TweakPhi removed gap before (T0547)N18 # TweakPsiPhi removed gap before (T0547)A345 # TweakPsiPhi removed gap before (T0547)A326 # TweakPhi removed gap before (T0547)S581 # TweakPsiPhi removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)G610 # TweakPsiSubtree removed gap before (T0547)N201 # TweakPsiPhi removed gap before (T0547)L557 # TweakPhi removed gap before (T0547)Y83 # TweakPhi removed gap before (T0547)E535 # TweakPhi removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)I32 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)I241 # TweakPhi removed gap before (T0547)L391 # TweakPhi removed gap before (T0547)V442 # TweakPhi removed gap before (T0547)M261 # TweakPsiPhi removed gap before (T0547)N289 # TweakPsiSubtree removed gap before (T0547)D383 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N24 # TweakPhi removed gap before (T0547)D562 # TweakPhi removed gap before (T0547)I369 # TweakPhi removed gap before (T0547)E12 # TweakPsiPhi removed gap before (T0547)T531 # TweakPsiPhi removed gap before (T0547)I573 # TweakPsiPhi removed gap before (T0547)I269 # TweakPhi removed gap before (T0547)F134 # TweakPsiPhi removed gap before (T0547)S287 # TweakPsiPhi removed gap before (T0547)D168 # TweakPhi removed gap before (T0547)F453 # TweakPsiPhi removed gap before (T0547)F324 # TweakPhi removed gap before (T0547)L606 # generation 165: best score out of 40: T0547.try1-opt2 204.77902 cost/residue, 784 clashes 0.13081 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 255 161 / 789 = 0.20406 0.00370 ## JiggleSubtree 2 45 29 / 417 = 0.06954 0.00528 ## JiggleSegment 5 57 38 / 529 = 0.07183 0.00436 ## OptSubtree 0 0 0 / 107 = 0.00000 0.00000 ## OptSegment 0 1 1 / 245 = 0.00408 0.00143 ## OptAllSegments 0 0 0 / 102 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 107 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 96 = 0.00000 0.00000 ## TweakPhiSubtree 54 472 277 / 1180 = 0.23475 0.00559 ## TweakPhiSegment 44 554 336 / 1194 = 0.28141 0.00588 ## TweakPsiSubtree 1 379 256 / 1142 = 0.22417 0.00554 ## TweakPsiSegment 3 585 379 / 1539 = 0.24626 0.00703 ## TweakPsiPhiSubtree 110 412 244 / 905 = 0.26961 0.00444 ## TweakPsiPhiSegment 102 352 194 / 788 = 0.24619 0.00385 ## TweakHbondSubtree 15 273 170 / 926 = 0.18359 0.00428 ## TweakHbondSegment 14 327 181 / 959 = 0.18874 0.00451 ## TweakMultimer 249 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 36 149 97 / 340 = 0.28529 0.00120 ## FixOmega 3 0 0 / 102 = 0.00000 0.00000 ## Backrub 158 238 109 / 529 = 0.20605 0.00210 ## BigBackrub 124 98 55 / 472 = 0.11653 0.00242 ## OneRotamer 0 292 137 / 1353 = 0.10126 0.00498 ## ClashingRotamer 1 3 1 / 184 = 0.00543 0.00071 ## ClusteredRotamer 18 4 2 / 146 = 0.01370 0.00079 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 217 = 0.00461 0.00012 ## CloseGap 0 19 6 / 266 = 0.02256 0.00614 ## HealGap 0 12 7 / 281 = 0.02491 0.00083 ## MoveGap 0 0 0 / 103 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 228 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 104 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 215 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 104 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 499 = 0.00000 0.00000 ## CrossOver 0 0 0 / 98 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 101 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 114 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)L223 # TweakPsiPhi removed gap before (T0547)K246 # TweakPhi removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)G395 # TweakPsiPhi removed gap before (T0547)A81 # TweakPsiPhi removed gap before (T0547)E346 # TweakPsiPhi removed gap before (T0547)E320 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPhi removed gap before (T0547)A476 # TweakPsiSubtree removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)I359 # TweakPhi removed gap before (T0547)Y290 # TweakPsiPhi removed gap before (T0547)L49 # TweakPsiSubtree removed gap before (T0547)F340 # TweakPhi removed gap before (T0547)F599 # TweakPhi removed gap before (T0547)V436 # TweakPsiSubtree removed gap before (T0547)Y104 # TweakPhi removed gap before (T0547)N297 # TweakPhi removed gap before (T0547)F510 # TweakPsiSubtree removed gap before (T0547)K203 # TweakPsiSubtree removed gap before (T0547)N404 # TweakPsiSubtree removed gap before (T0547)L465 # TweakPsiPhi removed gap before (T0547)L606 # TweakPsiSubtree removed gap before (T0547)G150 # TweakPhi removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)E138 # TweakPsiSubtree removed gap before (T0547)I129 # TweakPsiSubtree removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)D383 # TweakPsiPhi removed gap before (T0547)G273 # TweakPsiSubtree removed gap before (T0547)Q400 # TweakPsiSubtree removed gap before (T0547)M525 # TweakPsiPhi removed gap before (T0547)G19 # TweakPsiPhi removed gap before (T0547)A121 # TweakPsiSubtree removed gap before (T0547)D484 # generation 166: best score out of 40: T0547.try1-opt2 204.71822 cost/residue, 783 clashes 0.13116 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 257 162 / 800 = 0.20250 0.00365 ## JiggleSubtree 2 46 29 / 418 = 0.06938 0.00527 ## JiggleSegment 5 57 38 / 530 = 0.07170 0.00435 ## OptSubtree 0 0 0 / 107 = 0.00000 0.00000 ## OptSegment 0 1 1 / 246 = 0.00407 0.00142 ## OptAllSegments 0 0 0 / 102 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 108 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 97 = 0.00000 0.00000 ## TweakPhiSubtree 55 474 279 / 1187 = 0.23505 0.00557 ## TweakPhiSegment 45 555 337 / 1197 = 0.28154 0.00587 ## TweakPsiSubtree 1 382 260 / 1150 = 0.22609 0.00558 ## TweakPsiSegment 3 586 379 / 1549 = 0.24467 0.00698 ## TweakPsiPhiSubtree 111 413 244 / 908 = 0.26872 0.00442 ## TweakPsiPhiSegment 102 356 197 / 794 = 0.24811 0.00387 ## TweakHbondSubtree 16 275 172 / 934 = 0.18415 0.00434 ## TweakHbondSegment 14 331 183 / 967 = 0.18925 0.00448 ## TweakMultimer 253 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 36 150 97 / 343 = 0.28280 0.00119 ## FixOmega 3 0 0 / 102 = 0.00000 0.00000 ## Backrub 158 242 112 / 535 = 0.20935 0.00218 ## BigBackrub 124 98 55 / 474 = 0.11603 0.00241 ## OneRotamer 0 294 139 / 1363 = 0.10198 0.00501 ## ClashingRotamer 1 3 1 / 184 = 0.00543 0.00071 ## ClusteredRotamer 18 4 2 / 146 = 0.01370 0.00079 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 217 = 0.00461 0.00012 ## CloseGap 0 19 6 / 266 = 0.02256 0.00614 ## HealGap 0 12 7 / 281 = 0.02491 0.00083 ## MoveGap 0 0 0 / 103 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 230 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 106 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 215 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 104 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 502 = 0.00000 0.00000 ## CrossOver 0 0 0 / 99 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 101 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 116 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)D469 # TweakPsiSubtree removed gap before (T0547)Q89 # TweakPhi removed gap before (T0547)F510 # TweakPsiPhi removed gap before (T0547)A251 # TweakPsiPhi removed gap before (T0547)I537 # TweakPhi removed gap before (T0547)I306 # TweakPhi removed gap before (T0547)E595 # TweakPsiPhi removed gap before (T0547)K27 # TweakPsiPhi removed gap before (T0547)L598 # TweakPsiPhi removed gap before (T0547)D428 # TweakPsiPhi removed gap before (T0547)Y491 # TweakPsiSubtree removed gap before (T0547)G92 # TweakPhi removed gap before (T0547)L206 # TweakPsiPhi removed gap before (T0547)L497 # TweakPsiSubtree removed gap before (T0547)P461 # TweakPhi removed gap before (T0547)I432 # TweakPsiPhi removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)F340 # TweakPsiPhi removed gap before (T0547)K587 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)H242 # TweakPhi removed gap before (T0547)E386 # TweakPsiPhi removed gap before (T0547)L468 # TweakPsiPhi removed gap before (T0547)L116 # TweakPsiPhi removed gap before (T0547)V397 # TweakPhi removed gap before (T0547)Y440 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K311 # TweakPhi removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPhi removed gap before (T0547)G101 # TweakPhi removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)A214 # TweakPhi removed gap before (T0547)T207 # TweakPsiPhi removed gap before (T0547)D564 # TweakPsiSubtree removed gap before (T0547)I573 # TweakPhi removed gap before (T0547)L108 # TweakPhi removed gap before (T0547)G205 # TweakPhi removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)A345 # TweakPsiSubtree removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)E470 # generation 167: best score out of 40: T0547.try1-opt2 204.68710 cost/residue, 783 clashes 0.13117 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 258 162 / 806 = 0.20099 0.00362 ## JiggleSubtree 2 46 29 / 418 = 0.06938 0.00527 ## JiggleSegment 5 57 38 / 531 = 0.07156 0.00434 ## OptSubtree 0 0 0 / 107 = 0.00000 0.00000 ## OptSegment 0 1 1 / 247 = 0.00405 0.00142 ## OptAllSegments 0 0 0 / 103 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 108 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 97 = 0.00000 0.00000 ## TweakPhiSubtree 56 477 281 / 1199 = 0.23436 0.00559 ## TweakPhiSegment 45 557 338 / 1202 = 0.28120 0.00585 ## TweakPsiSubtree 1 384 260 / 1158 = 0.22453 0.00555 ## TweakPsiSegment 3 587 380 / 1553 = 0.24469 0.00696 ## TweakPsiPhiSubtree 113 416 246 / 915 = 0.26885 0.00447 ## TweakPsiPhiSegment 105 359 200 / 800 = 0.25000 0.00385 ## TweakHbondSubtree 17 278 174 / 942 = 0.18471 0.00441 ## TweakHbondSegment 14 332 184 / 972 = 0.18930 0.00447 ## TweakMultimer 256 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 36 152 100 / 346 = 0.28902 0.00123 ## FixOmega 3 0 0 / 103 = 0.00000 0.00000 ## Backrub 159 245 114 / 541 = 0.21072 0.00222 ## BigBackrub 126 98 55 / 475 = 0.11579 0.00241 ## OneRotamer 0 297 140 / 1380 = 0.10145 0.00496 ## ClashingRotamer 1 3 1 / 184 = 0.00543 0.00071 ## ClusteredRotamer 18 4 2 / 147 = 0.01361 0.00078 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 217 = 0.00461 0.00012 ## CloseGap 0 19 6 / 266 = 0.02256 0.00614 ## HealGap 0 12 7 / 281 = 0.02491 0.00083 ## MoveGap 0 0 0 / 103 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 230 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 107 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 217 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 106 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 503 = 0.00000 0.00000 ## CrossOver 0 0 0 / 99 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 102 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 116 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)G199 # TweakPsiPhi removed gap before (T0547)S445 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPsiPhi removed gap before (T0547)N65 # TweakPhi removed gap before (T0547)S112 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)D494 # TweakPsiSubtree removed gap before (T0547)L497 # TweakPhi removed gap before (T0547)F510 # TweakPsiPhi removed gap before (T0547)A30 # TweakPhi removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)F134 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPsiPhi removed gap before (T0547)L224 # TweakPsiSubtree removed gap before (T0547)P29 # TweakPsiPhi removed gap before (T0547)I369 # TweakPsiSubtree removed gap before (T0547)G19 # TweakPsiPhi removed gap before (T0547)K526 # TweakPhi removed gap before (T0547)L244 # TweakPhi removed gap before (T0547)L339 # TweakPsiPhi removed gap before (T0547)L332 # TweakPsiPhi removed gap before (T0547)K304 # TweakPhi removed gap before (T0547)I551 # TweakPhi removed gap before (T0547)E470 # TweakPsiSubtree removed gap before (T0547)D7 # TweakPsiPhi removed gap before (T0547)I6 # TweakPhi removed gap before (T0547)S381 # TweakPhi removed gap before (T0547)M463 # TweakPsiSubtree removed gap before (T0547)K95 # TweakPsiPhi removed gap before (T0547)E125 # TweakPsiSubtree removed gap before (T0547)H532 # TweakPhi removed gap before (T0547)V436 # TweakPhi removed gap before (T0547)L163 # TweakPhi removed gap before (T0547)Y366 # TweakPsiSubtree removed gap before (T0547)R50 # TweakPhi removed gap before (T0547)Q309 # TweakPhi removed gap before (T0547)H379 # TweakPhi removed gap before (T0547)G610 # TweakPhi removed gap before (T0547)Y255 # TweakPsiPhi removed gap before (T0547)E406 # TweakPsiPhi removed gap before (T0547)K171 # TweakPsiSubtree removed gap before (T0547)L394 # TweakPsiSubtree removed gap before (T0547)G143 # TweakPsiPhi removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPsiPhi removed gap before (T0547)A427 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L224 # TweakPsiSubtree removed gap before (T0547)Y545 # TweakPsiSubtree removed gap before (T0547)K607 # TweakPhi removed gap before (T0547)S403 # generation 168: best score out of 40: T0547.try1-opt2 204.57086 cost/residue, 783 clashes 0.13137 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 260 163 / 813 = 0.20049 0.00359 ## JiggleSubtree 2 46 29 / 418 = 0.06938 0.00527 ## JiggleSegment 5 57 38 / 531 = 0.07156 0.00434 ## OptSubtree 0 0 0 / 107 = 0.00000 0.00000 ## OptSegment 0 1 1 / 247 = 0.00405 0.00142 ## OptAllSegments 0 0 0 / 104 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 108 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 98 = 0.00000 0.00000 ## TweakPhiSubtree 56 480 283 / 1213 = 0.23331 0.00552 ## TweakPhiSegment 45 561 341 / 1209 = 0.28205 0.00582 ## TweakPsiSubtree 1 387 261 / 1168 = 0.22346 0.00550 ## TweakPsiSegment 3 593 385 / 1561 = 0.24664 0.00706 ## TweakPsiPhiSubtree 114 417 247 / 921 = 0.26819 0.00445 ## TweakPsiPhiSegment 105 361 201 / 809 = 0.24845 0.00381 ## TweakHbondSubtree 18 280 175 / 951 = 0.18402 0.00438 ## TweakHbondSegment 14 334 186 / 976 = 0.19057 0.00450 ## TweakMultimer 257 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 37 153 100 / 350 = 0.28571 0.00121 ## FixOmega 3 0 0 / 103 = 0.00000 0.00000 ## Backrub 161 246 114 / 548 = 0.20803 0.00219 ## BigBackrub 127 99 56 / 477 = 0.11740 0.00241 ## OneRotamer 0 298 141 / 1386 = 0.10173 0.00495 ## ClashingRotamer 1 3 1 / 184 = 0.00543 0.00071 ## ClusteredRotamer 18 4 2 / 147 = 0.01361 0.00078 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 217 = 0.00461 0.00012 ## CloseGap 0 19 6 / 266 = 0.02256 0.00614 ## HealGap 0 12 7 / 281 = 0.02491 0.00083 ## MoveGap 0 0 0 / 104 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 230 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 107 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 217 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 106 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 504 = 0.00000 0.00000 ## CrossOver 0 0 0 / 102 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 102 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 116 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)E595 # TweakPhi removed gap before (T0547)D103 # TweakPsiSubtree removed gap before (T0547)N528 # TweakPsiSubtree removed gap before (T0547)K543 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)L391 # TweakPhi removed gap before (T0547)I145 # TweakPsiPhi removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)N289 # TweakPsiSubtree removed gap before (T0547)L441 # TweakPsiSubtree removed gap before (T0547)I302 # TweakPsiSubtree removed gap before (T0547)E470 # TweakPsiSubtree removed gap before (T0547)E308 # TweakPhi removed gap before (T0547)R467 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)A268 # TweakPsiPhi removed gap before (T0547)A327 # TweakPhi removed gap before (T0547)K28 # TweakPsiSubtree removed gap before (T0547)E548 # TweakPhi removed gap before (T0547)K526 # TweakPsiPhi removed gap before (T0547)Q226 # TweakPhi removed gap before (T0547)D40 # TweakPsiSubtree removed gap before (T0547)K352 # TweakPhi removed gap before (T0547)Q56 # TweakPsiSubtree removed gap before (T0547)I537 # TweakPsiPhi removed gap before (T0547)N13 # TweakPsiSubtree removed gap before (T0547)I388 # TweakPsiSubtree removed gap before (T0547)E115 # TweakPsiPhi removed gap before (T0547)K17 # TweakPsiSubtree removed gap before (T0547)T239 # TweakPsiPhi removed gap before (T0547)S445 # TweakPsiPhi removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)L85 # TweakPsiPhi removed gap before (T0547)V277 # TweakPsiPhi removed gap before (T0547)L337 # TweakPsiPhi removed gap before (T0547)N65 # TweakPhi removed gap before (T0547)N105 # TweakPsiSubtree removed gap before (T0547)T209 # TweakPsiPhi removed gap before (T0547)G273 # TweakPsiSubtree removed gap before (T0547)Y545 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPhi removed gap before (T0547)T482 # TweakPhi removed gap before (T0547)L116 # TweakPsiPhi removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)S490 # TweakPsiSubtree removed gap before (T0547)I538 # generation 169: best score out of 40: T0547.try1-opt2 204.55138 cost/residue, 783 clashes 0.13137 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 261 164 / 818 = 0.20049 0.00359 ## JiggleSubtree 2 46 29 / 418 = 0.06938 0.00527 ## JiggleSegment 5 57 38 / 532 = 0.07143 0.00434 ## OptSubtree 0 0 0 / 107 = 0.00000 0.00000 ## OptSegment 0 1 1 / 247 = 0.00405 0.00142 ## OptAllSegments 0 0 0 / 106 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 108 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 98 = 0.00000 0.00000 ## TweakPhiSubtree 56 483 284 / 1224 = 0.23203 0.00554 ## TweakPhiSegment 45 563 341 / 1215 = 0.28066 0.00579 ## TweakPsiSubtree 1 388 262 / 1179 = 0.22222 0.00545 ## TweakPsiSegment 3 593 387 / 1569 = 0.24665 0.00702 ## TweakPsiPhiSubtree 116 421 249 / 932 = 0.26717 0.00446 ## TweakPsiPhiSegment 105 363 202 / 813 = 0.24846 0.00384 ## TweakHbondSubtree 18 283 178 / 958 = 0.18580 0.00440 ## TweakHbondSegment 14 337 188 / 980 = 0.19184 0.00449 ## TweakMultimer 258 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 37 153 100 / 351 = 0.28490 0.00121 ## FixOmega 3 0 0 / 103 = 0.00000 0.00000 ## Backrub 164 248 114 / 556 = 0.20504 0.00216 ## BigBackrub 127 99 56 / 479 = 0.11691 0.00240 ## OneRotamer 0 300 142 / 1395 = 0.10179 0.00494 ## ClashingRotamer 1 3 1 / 186 = 0.00538 0.00070 ## ClusteredRotamer 18 5 3 / 148 = 0.02027 0.00080 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 218 = 0.00459 0.00012 ## CloseGap 0 19 6 / 266 = 0.02256 0.00614 ## HealGap 0 12 7 / 281 = 0.02491 0.00083 ## MoveGap 0 0 0 / 105 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 231 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 108 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 217 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 106 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 506 = 0.00000 0.00000 ## CrossOver 0 0 0 / 103 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 102 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 116 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)K506 # TweakPsiPhi removed gap before (T0547)N253 # TweakPsiSubtree removed gap before (T0547)V277 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L446 # TweakPhi removed gap before (T0547)K357 # TweakPsiSubtree removed gap before (T0547)K71 # TweakPsiSubtree removed gap before (T0547)D452 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)S341 # TweakPsiPhi removed gap before (T0547)G252 # TweakPsiSubtree removed gap before (T0547)L441 # TweakPsiSubtree removed gap before (T0547)Q554 # TweakPhi removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)K587 # TweakPsiSubtree removed gap before (T0547)I306 # TweakPsiPhi removed gap before (T0547)Y279 # TweakPsiSubtree removed gap before (T0547)F144 # TweakPsiPhi removed gap before (T0547)A119 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)A553 # TweakPsiPhi removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)N580 # TweakPhi removed gap before (T0547)A247 # TweakPsiSubtree removed gap before (T0547)G92 # TweakPsiSubtree removed gap before (T0547)T239 # TweakPhi removed gap before (T0547)Y545 # TweakPsiSubtree removed gap before (T0547)L362 # TweakPsiSubtree removed gap before (T0547)E308 # TweakPsiPhi removed gap before (T0547)L163 # TweakPsiPhi removed gap before (T0547)K17 # TweakPsiSubtree removed gap before (T0547)I16 # TweakPsiSubtree removed gap before (T0547)I333 # TweakPsiPhi removed gap before (T0547)L497 # TweakPsiPhi removed gap before (T0547)Q588 # TweakPhi removed gap before (T0547)L419 # TweakPsiPhi removed gap before (T0547)N11 # TweakPsiPhi removed gap before (T0547)A307 # TweakPsiPhi removed gap before (T0547)D494 # TweakPsiSubtree removed gap before (T0547)A165 # TweakPhi removed gap before (T0547)V611 # TweakPhi removed gap before (T0547)F340 # TweakPsiPhi removed gap before (T0547)L499 # TweakPsiSubtree removed gap before (T0547)I169 # generation 170: best score out of 40: T0547.try1-opt2 204.48299 cost/residue, 780 clashes 0.13150 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 264 165 / 827 = 0.19952 0.00357 ## JiggleSubtree 2 46 29 / 418 = 0.06938 0.00527 ## JiggleSegment 5 57 38 / 532 = 0.07143 0.00434 ## OptSubtree 0 0 0 / 108 = 0.00000 0.00000 ## OptSegment 0 1 1 / 247 = 0.00405 0.00142 ## OptAllSegments 0 0 0 / 106 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 109 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 98 = 0.00000 0.00000 ## TweakPhiSubtree 56 485 284 / 1227 = 0.23146 0.00552 ## TweakPhiSegment 45 564 342 / 1220 = 0.28033 0.00578 ## TweakPsiSubtree 1 391 263 / 1188 = 0.22138 0.00543 ## TweakPsiSegment 3 596 390 / 1580 = 0.24684 0.00706 ## TweakPsiPhiSubtree 119 423 251 / 942 = 0.26645 0.00444 ## TweakPsiPhiSegment 106 367 205 / 821 = 0.24970 0.00385 ## TweakHbondSubtree 18 285 179 / 967 = 0.18511 0.00437 ## TweakHbondSegment 14 340 191 / 987 = 0.19352 0.00450 ## TweakMultimer 259 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 37 155 102 / 354 = 0.28814 0.00126 ## FixOmega 3 0 0 / 103 = 0.00000 0.00000 ## Backrub 166 251 115 / 561 = 0.20499 0.00216 ## BigBackrub 128 99 56 / 481 = 0.11642 0.00239 ## OneRotamer 0 303 145 / 1405 = 0.10320 0.00501 ## ClashingRotamer 1 3 1 / 187 = 0.00535 0.00070 ## ClusteredRotamer 18 5 3 / 151 = 0.01987 0.00078 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 218 = 0.00459 0.00012 ## CloseGap 0 19 6 / 267 = 0.02247 0.00611 ## HealGap 0 12 7 / 281 = 0.02491 0.00083 ## MoveGap 0 0 0 / 105 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 231 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 108 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 217 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 106 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 506 = 0.00000 0.00000 ## CrossOver 0 0 0 / 103 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 20 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 102 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 117 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)Q437 # TweakPhi removed gap before (T0547)L163 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPsiSubtree removed gap before (T0547)E361 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)T228 # TweakPhi removed gap before (T0547)G322 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)T390 # TweakPsiSubtree removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)F447 # TweakPhi removed gap before (T0547)N18 # TweakPhi removed gap before (T0547)S321 # TweakPhi removed gap before (T0547)H151 # TweakPsiSubtree removed gap before (T0547)G395 # TweakPsiSubtree removed gap before (T0547)L499 # TweakPhi removed gap before (T0547)D401 # TweakPsiPhi removed gap before (T0547)A276 # TweakPsiSubtree removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)M2 # TweakPsiPhi removed gap before (T0547)A247 # TweakPsiSubtree removed gap before (T0547)A127 # TweakPsiPhi removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)F227 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)M571 # TweakPhi removed gap before (T0547)Q56 # TweakPsiPhi removed gap before (T0547)Q520 # TweakPsiPhi removed gap before (T0547)L182 # TweakPsiSubtree removed gap before (T0547)F301 # TweakPsiSubtree removed gap before (T0547)I212 # TweakPhi removed gap before (T0547)G274 # TweakPhi removed gap before (T0547)G262 # TweakPhi removed gap before (T0547)K310 # TweakPsiPhi removed gap before (T0547)G235 # TweakPsiPhi removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)T256 # TweakPsiSubtree removed gap before (T0547)P472 # TweakPsiSubtree removed gap before (T0547)S197 # TweakPsiPhi removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)V325 # TweakPsiPhi removed gap before (T0547)F144 # TweakPsiSubtree removed gap before (T0547)Y4 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)T256 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E505 # TweakPsiPhi removed gap before (T0547)K587 # generation 171: best score out of 40: T0547.try1-opt2 204.45840 cost/residue, 786 clashes 0.13137 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 264 166 / 831 = 0.19976 0.00357 ## JiggleSubtree 2 46 29 / 419 = 0.06921 0.00526 ## JiggleSegment 5 57 38 / 533 = 0.07129 0.00433 ## OptSubtree 0 0 0 / 108 = 0.00000 0.00000 ## OptSegment 0 1 1 / 247 = 0.00405 0.00142 ## OptAllSegments 0 0 0 / 106 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 110 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 98 = 0.00000 0.00000 ## TweakPhiSubtree 56 487 286 / 1239 = 0.23083 0.00552 ## TweakPhiSegment 45 567 344 / 1224 = 0.28105 0.00577 ## TweakPsiSubtree 1 393 264 / 1196 = 0.22074 0.00541 ## TweakPsiSegment 3 598 392 / 1588 = 0.24685 0.00704 ## TweakPsiPhiSubtree 120 427 254 / 948 = 0.26793 0.00446 ## TweakPsiPhiSegment 107 370 207 / 830 = 0.24940 0.00385 ## TweakHbondSubtree 18 288 182 / 976 = 0.18648 0.00434 ## TweakHbondSegment 14 341 192 / 993 = 0.19335 0.00449 ## TweakMultimer 262 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 37 160 105 / 361 = 0.29086 0.00131 ## FixOmega 3 0 0 / 103 = 0.00000 0.00000 ## Backrub 171 252 117 / 565 = 0.20708 0.00222 ## BigBackrub 129 100 56 / 485 = 0.11546 0.00237 ## OneRotamer 0 304 146 / 1416 = 0.10311 0.00501 ## ClashingRotamer 1 3 1 / 187 = 0.00535 0.00070 ## ClusteredRotamer 18 5 3 / 154 = 0.01948 0.00077 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 219 = 0.00457 0.00012 ## CloseGap 0 19 6 / 267 = 0.02247 0.00611 ## HealGap 0 12 7 / 281 = 0.02491 0.00083 ## MoveGap 0 0 0 / 105 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 231 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 108 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 217 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 106 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 507 = 0.00000 0.00000 ## CrossOver 0 0 0 / 103 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 20 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 102 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 117 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)I350 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)N328 # TweakPhi removed gap before (T0547)A263 # TweakPsiPhi removed gap before (T0547)E457 # TweakPsiPhi removed gap before (T0547)D103 # TweakPsiPhi removed gap before (T0547)Q588 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)A569 # TweakPsiPhi removed gap before (T0547)L224 # TweakPsiSubtree removed gap before (T0547)N11 # TweakPsiSubtree removed gap before (T0547)V331 # TweakPhi removed gap before (T0547)G205 # TweakPhi removed gap before (T0547)V547 # TweakPsiSubtree removed gap before (T0547)G455 # TweakPhi removed gap before (T0547)G455 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPsiPhi removed gap before (T0547)N575 # TweakPsiSubtree removed gap before (T0547)V516 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K203 # TweakPsiPhi removed gap before (T0547)G235 # TweakPsiSubtree removed gap before (T0547)L378 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)T413 # TweakPsiSubtree removed gap before (T0547)I241 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)F392 # TweakPhi removed gap before (T0547)K102 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A165 # TweakPsiPhi removed gap before (T0547)K589 # TweakPsiSubtree removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)F340 # TweakPsiPhi removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)F599 # TweakPhi removed gap before (T0547)N201 # TweakPhi removed gap before (T0547)E386 # TweakPsiSubtree removed gap before (T0547)D586 # TweakPsiPhi removed gap before (T0547)S372 # TweakPhi removed gap before (T0547)K283 # TweakPsiPhi removed gap before (T0547)H53 # TweakPsiSubtree removed gap before (T0547)L574 # TweakPsiPhi removed gap before (T0547)S287 # TweakPhi removed gap before (T0547)R183 # TweakPhi removed gap before (T0547)Y279 # TweakPsiPhi removed gap before (T0547)L523 # TweakPhi removed gap before (T0547)I412 # TweakPsiPhi removed gap before (T0547)K582 # TweakPsiPhi removed gap before (T0547)Q433 # generation 172: best score out of 40: T0547.try1-opt2 204.45589 cost/residue, 786 clashes 0.13137 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 265 167 / 837 = 0.19952 0.00354 ## JiggleSubtree 2 46 29 / 421 = 0.06888 0.00523 ## JiggleSegment 5 57 38 / 533 = 0.07129 0.00433 ## OptSubtree 0 0 0 / 109 = 0.00000 0.00000 ## OptSegment 0 1 1 / 247 = 0.00405 0.00142 ## OptAllSegments 0 0 0 / 106 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 110 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 98 = 0.00000 0.00000 ## TweakPhiSubtree 57 488 287 / 1245 = 0.23052 0.00550 ## TweakPhiSegment 45 568 344 / 1230 = 0.27967 0.00574 ## TweakPsiSubtree 1 395 265 / 1204 = 0.22010 0.00537 ## TweakPsiSegment 3 605 396 / 1597 = 0.24796 0.00702 ## TweakPsiPhiSubtree 122 431 256 / 955 = 0.26806 0.00446 ## TweakPsiPhiSegment 108 371 207 / 840 = 0.24643 0.00381 ## TweakHbondSubtree 18 288 182 / 982 = 0.18534 0.00431 ## TweakHbondSegment 14 343 193 / 999 = 0.19319 0.00447 ## TweakMultimer 270 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 39 166 111 / 372 = 0.29839 0.00131 ## FixOmega 3 0 0 / 103 = 0.00000 0.00000 ## Backrub 175 253 117 / 569 = 0.20562 0.00220 ## BigBackrub 130 101 56 / 486 = 0.11523 0.00236 ## OneRotamer 0 305 147 / 1426 = 0.10309 0.00498 ## ClashingRotamer 1 3 1 / 187 = 0.00535 0.00070 ## ClusteredRotamer 18 5 3 / 154 = 0.01948 0.00077 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 219 = 0.00457 0.00012 ## CloseGap 0 19 6 / 268 = 0.02239 0.00609 ## HealGap 0 13 8 / 282 = 0.02837 0.00088 ## MoveGap 0 0 0 / 106 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 232 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 109 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 217 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 106 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 508 = 0.00000 0.00000 ## CrossOver 0 0 0 / 103 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 20 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 102 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 118 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)K102 # TweakPsiPhi removed gap before (T0547)L218 # TweakPhi removed gap before (T0547)D480 # TweakPsiSubtree removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)F340 # TweakPhi removed gap before (T0547)T207 # TweakPsiSubtree removed gap before (T0547)R474 # TweakPhi removed gap before (T0547)V584 # TweakPsiSubtree removed gap before (T0547)N289 # TweakPsiPhi removed gap before (T0547)K370 # TweakPsiPhi removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)L337 # TweakPsiPhi removed gap before (T0547)L399 # TweakPsiSubtree removed gap before (T0547)L275 # TweakPsiSubtree removed gap before (T0547)M571 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F498 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)N425 # TweakPsiPhi removed gap before (T0547)L223 # TweakPsiPhi removed gap before (T0547)K102 # TweakPsiPhi removed gap before (T0547)L100 # TweakPsiPhi removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)S236 # TweakPhi removed gap before (T0547)I317 # TweakPsiSubtree removed gap before (T0547)A263 # TweakPhi removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)E257 # TweakPsiSubtree removed gap before (T0547)F204 # TweakPhi removed gap before (T0547)D40 # TweakPsiPhi removed gap before (T0547)E488 # TweakPsiSubtree removed gap before (T0547)P496 # TweakPsiSubtree removed gap before (T0547)D503 # TweakPhi removed gap before (T0547)N603 # TweakPsiPhi removed gap before (T0547)I417 # TweakPsiPhi removed gap before (T0547)Y295 # TweakPhi removed gap before (T0547)D503 # TweakPhi removed gap before (T0547)N603 # TweakPsiPhi removed gap before (T0547)V516 # generation 173: best score out of 40: T0547.try1-opt2 204.43010 cost/residue, 786 clashes 0.13143 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 266 167 / 841 = 0.19857 0.00353 ## JiggleSubtree 2 46 29 / 422 = 0.06872 0.00522 ## JiggleSegment 5 57 38 / 533 = 0.07129 0.00433 ## OptSubtree 0 0 0 / 109 = 0.00000 0.00000 ## OptSegment 0 1 1 / 248 = 0.00403 0.00141 ## OptAllSegments 0 0 0 / 106 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 111 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 98 = 0.00000 0.00000 ## TweakPhiSubtree 57 491 287 / 1251 = 0.22942 0.00548 ## TweakPhiSegment 45 572 346 / 1237 = 0.27971 0.00573 ## TweakPsiSubtree 1 396 266 / 1209 = 0.22002 0.00536 ## TweakPsiSegment 3 608 400 / 1609 = 0.24860 0.00700 ## TweakPsiPhiSubtree 124 433 257 / 961 = 0.26743 0.00444 ## TweakPsiPhiSegment 111 375 208 / 847 = 0.24557 0.00379 ## TweakHbondSubtree 18 290 184 / 988 = 0.18623 0.00430 ## TweakHbondSegment 15 344 193 / 1005 = 0.19204 0.00444 ## TweakMultimer 271 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 40 168 111 / 374 = 0.29679 0.00130 ## FixOmega 3 0 0 / 103 = 0.00000 0.00000 ## Backrub 176 254 118 / 573 = 0.20593 0.00219 ## BigBackrub 130 101 56 / 487 = 0.11499 0.00236 ## OneRotamer 0 307 148 / 1439 = 0.10285 0.00496 ## ClashingRotamer 1 3 1 / 187 = 0.00535 0.00070 ## ClusteredRotamer 18 5 3 / 155 = 0.01935 0.00076 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 219 = 0.00457 0.00012 ## CloseGap 0 19 6 / 268 = 0.02239 0.00609 ## HealGap 0 13 8 / 297 = 0.02694 0.00084 ## MoveGap 0 0 0 / 106 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 232 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 109 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 217 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 106 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 509 = 0.00000 0.00000 ## CrossOver 0 0 0 / 103 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 102 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 118 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)W194 # TweakPsiPhi removed gap before (T0547)N305 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)K589 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPhi removed gap before (T0547)Y4 # TweakPsiPhi removed gap before (T0547)N249 # TweakPhi removed gap before (T0547)I350 # TweakPsiSubtree removed gap before (T0547)L85 # TweakPhi removed gap before (T0547)I23 # TweakPhi removed gap before (T0547)N249 # TweakPsiPhi removed gap before (T0547)F510 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)G524 # TweakPhi removed gap before (T0547)F510 # TweakPhi removed gap before (T0547)L375 # TweakPsiSubtree removed gap before (T0547)S188 # TweakPsiSubtree removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)E595 # TweakPhi removed gap before (T0547)K543 # TweakPsiSubtree removed gap before (T0547)T256 # TweakPsiSubtree removed gap before (T0547)G19 # TweakPhi removed gap before (T0547)E148 # TweakPsiSubtree removed gap before (T0547)L211 # TweakPsiSubtree removed gap before (T0547)S372 # TweakPhi removed gap before (T0547)E507 # TweakPhi removed gap before (T0547)N404 # TweakPsiPhi removed gap before (T0547)F514 # TweakPsiSubtree removed gap before (T0547)K246 # TweakPsiSubtree removed gap before (T0547)S321 # TweakPsiSubtree removed gap before (T0547)E138 # TweakPsiPhi removed gap before (T0547)V35 # TweakPsiSubtree removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)M571 # TweakPsiPhi removed gap before (T0547)L560 # TweakPsiPhi removed gap before (T0547)T531 # TweakPsiPhi removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)E285 # TweakPsiSubtree removed gap before (T0547)N61 # generation 174: best score out of 40: T0547.try1-opt2 204.42363 cost/residue, 780 clashes 0.13154 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 266 167 / 848 = 0.19693 0.00350 ## JiggleSubtree 2 46 29 / 422 = 0.06872 0.00522 ## JiggleSegment 5 57 38 / 533 = 0.07129 0.00433 ## OptSubtree 0 0 0 / 110 = 0.00000 0.00000 ## OptSegment 0 1 1 / 250 = 0.00400 0.00140 ## OptAllSegments 0 0 0 / 106 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 111 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 98 = 0.00000 0.00000 ## TweakPhiSubtree 57 494 289 / 1259 = 0.22955 0.00546 ## TweakPhiSegment 46 574 348 / 1242 = 0.28019 0.00574 ## TweakPsiSubtree 1 397 267 / 1214 = 0.21993 0.00535 ## TweakPsiSegment 3 612 403 / 1620 = 0.24877 0.00697 ## TweakPsiPhiSubtree 124 437 260 / 969 = 0.26832 0.00444 ## TweakPsiPhiSegment 112 376 209 / 850 = 0.24588 0.00378 ## TweakHbondSubtree 19 291 185 / 998 = 0.18537 0.00426 ## TweakHbondSegment 15 345 193 / 1009 = 0.19128 0.00442 ## TweakMultimer 273 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 40 171 113 / 385 = 0.29351 0.00129 ## FixOmega 3 0 0 / 104 = 0.00000 0.00000 ## Backrub 177 255 119 / 576 = 0.20660 0.00219 ## BigBackrub 131 102 57 / 492 = 0.11585 0.00235 ## OneRotamer 0 309 149 / 1445 = 0.10311 0.00495 ## ClashingRotamer 1 3 1 / 187 = 0.00535 0.00070 ## ClusteredRotamer 18 5 3 / 156 = 0.01923 0.00076 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 220 = 0.00455 0.00012 ## CloseGap 0 19 6 / 268 = 0.02239 0.00609 ## HealGap 0 13 8 / 298 = 0.02685 0.00083 ## MoveGap 0 0 0 / 106 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 233 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 111 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 217 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 106 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 509 = 0.00000 0.00000 ## CrossOver 0 0 0 / 105 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 104 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 118 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)S403 # TweakPsiPhi removed gap before (T0547)H410 # TweakPsiSubtree removed gap before (T0547)I573 # TweakPhi removed gap before (T0547)D298 # TweakPhi removed gap before (T0547)N305 # TweakPsiPhi removed gap before (T0547)I167 # TweakPsiSubtree removed gap before (T0547)N65 # TweakPsiPhi removed gap before (T0547)K352 # TweakPhi removed gap before (T0547)S202 # TweakPsiPhi removed gap before (T0547)A569 # TweakPsiSubtree removed gap before (T0547)S555 # TweakPhi removed gap before (T0547)I16 # TweakPhi removed gap before (T0547)L378 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)T239 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)E552 # TweakPsiPhi removed gap before (T0547)G111 # TweakPhi removed gap before (T0547)Y396 # TweakPsiSubtree removed gap before (T0547)E505 # TweakPhi removed gap before (T0547)K99 # TweakPhi removed gap before (T0547)V584 # TweakPsiSubtree removed gap before (T0547)E488 # TweakPsiPhi removed gap before (T0547)Y366 # TweakPsiPhi removed gap before (T0547)Q237 # TweakPsiPhi removed gap before (T0547)E343 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPsiPhi removed gap before (T0547)A330 # TweakPsiSubtree removed gap before (T0547)H53 # TweakPsiPhi removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)A147 # TweakPsiPhi removed gap before (T0547)F453 # TweakPsiPhi removed gap before (T0547)Y440 # TweakPsiSubtree removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)E346 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V522 # TweakPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)N65 # TweakPhi removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)K177 # generation 175: best score out of 40: T0547.try1-opt2 204.38478 cost/residue, 783 clashes 0.13112 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 267 167 / 853 = 0.19578 0.00348 ## JiggleSubtree 2 46 29 / 424 = 0.06840 0.00520 ## JiggleSegment 5 57 38 / 533 = 0.07129 0.00433 ## OptSubtree 0 0 0 / 111 = 0.00000 0.00000 ## OptSegment 0 1 1 / 250 = 0.00400 0.00140 ## OptAllSegments 0 0 0 / 107 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 112 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 99 = 0.00000 0.00000 ## TweakPhiSubtree 57 495 290 / 1266 = 0.22907 0.00543 ## TweakPhiSegment 47 579 352 / 1248 = 0.28205 0.00578 ## TweakPsiSubtree 1 401 268 / 1221 = 0.21949 0.00536 ## TweakPsiSegment 3 614 404 / 1627 = 0.24831 0.00694 ## TweakPsiPhiSubtree 124 438 261 / 977 = 0.26714 0.00441 ## TweakPsiPhiSegment 113 377 210 / 856 = 0.24533 0.00376 ## TweakHbondSubtree 20 292 185 / 1004 = 0.18426 0.00423 ## TweakHbondSegment 15 347 194 / 1013 = 0.19151 0.00441 ## TweakMultimer 275 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 40 175 116 / 391 = 0.29668 0.00129 ## FixOmega 3 0 0 / 104 = 0.00000 0.00000 ## Backrub 179 256 120 / 579 = 0.20725 0.00219 ## BigBackrub 132 102 57 / 495 = 0.11515 0.00234 ## OneRotamer 0 310 149 / 1460 = 0.10205 0.00490 ## ClashingRotamer 1 3 1 / 187 = 0.00535 0.00070 ## ClusteredRotamer 18 5 3 / 157 = 0.01911 0.00075 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 223 = 0.00448 0.00012 ## CloseGap 0 19 6 / 269 = 0.02230 0.00607 ## HealGap 0 13 8 / 299 = 0.02676 0.00083 ## MoveGap 0 0 0 / 106 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 234 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 111 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 218 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 107 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 510 = 0.00000 0.00000 ## CrossOver 0 0 0 / 105 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 104 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 119 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)G192 # TweakPhi removed gap before (T0547)K203 # TweakPsiSubtree removed gap before (T0547)Y25 # TweakPsiSubtree removed gap before (T0547)D602 # TweakPhi removed gap before (T0547)G111 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F134 # TweakPsiPhi removed gap before (T0547)I592 # TweakPsiPhi removed gap before (T0547)I153 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)P335 # TweakPhi removed gap before (T0547)S287 # TweakPsiSubtree removed gap before (T0547)Y565 # TweakPsiPhi removed gap before (T0547)S112 # TweakPhi removed gap before (T0547)I238 # TweakPhi removed gap before (T0547)D564 # TweakPsiSubtree removed gap before (T0547)K283 # TweakPhi removed gap before (T0547)A121 # TweakPsiSubtree removed gap before (T0547)G604 # TweakPsiPhi removed gap before (T0547)A374 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L408 # TweakPsiSubtree removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)I241 # TweakPhi removed gap before (T0547)N404 # TweakPsiPhi removed gap before (T0547)W194 # TweakPhi removed gap before (T0547)G78 # TweakPsiSubtree removed gap before (T0547)N80 # TweakPsiPhi removed gap before (T0547)L49 # TweakPhi removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)T482 # TweakPhi removed gap before (T0547)L523 # TweakPsiPhi removed gap before (T0547)H500 # TweakPsiSubtree removed gap before (T0547)I551 # TweakPsiPhi removed gap before (T0547)I241 # TweakPhi removed gap before (T0547)D558 # TweakPhi removed gap before (T0547)N201 # TweakPsiSubtree removed gap before (T0547)A165 # TweakPsiPhi removed gap before (T0547)Y4 # TweakPsiSubtree removed gap before (T0547)N124 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPhi removed gap before (T0547)I388 # TweakPhi removed gap before (T0547)Q226 # TweakPsiPhi removed gap before (T0547)Q237 # TweakPsiPhi removed gap before (T0547)I59 # TweakPsiSubtree removed gap before (T0547)G181 # TweakPsiPhi removed gap before (T0547)K283 # generation 176: best score out of 40: T0547.try1-opt2 204.28391 cost/residue, 778 clashes 0.13112 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 270 169 / 863 = 0.19583 0.00345 ## JiggleSubtree 2 46 29 / 424 = 0.06840 0.00520 ## JiggleSegment 5 57 38 / 533 = 0.07129 0.00433 ## OptSubtree 0 0 0 / 111 = 0.00000 0.00000 ## OptSegment 0 1 1 / 250 = 0.00400 0.00140 ## OptAllSegments 0 0 0 / 107 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 112 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 99 = 0.00000 0.00000 ## TweakPhiSubtree 57 498 292 / 1277 = 0.22866 0.00540 ## TweakPhiSegment 47 582 353 / 1254 = 0.28150 0.00575 ## TweakPsiSubtree 1 404 271 / 1232 = 0.21997 0.00534 ## TweakPsiSegment 3 617 405 / 1633 = 0.24801 0.00697 ## TweakPsiPhiSubtree 125 440 262 / 984 = 0.26626 0.00440 ## TweakPsiPhiSegment 114 378 211 / 863 = 0.24450 0.00375 ## TweakHbondSubtree 20 293 186 / 1012 = 0.18379 0.00420 ## TweakHbondSegment 15 349 196 / 1024 = 0.19141 0.00437 ## TweakMultimer 277 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 40 176 117 / 395 = 0.29620 0.00129 ## FixOmega 3 0 0 / 104 = 0.00000 0.00000 ## Backrub 182 258 122 / 583 = 0.20926 0.00222 ## BigBackrub 132 102 57 / 497 = 0.11469 0.00233 ## OneRotamer 0 312 151 / 1465 = 0.10307 0.00496 ## ClashingRotamer 1 3 1 / 187 = 0.00535 0.00070 ## ClusteredRotamer 18 5 3 / 157 = 0.01911 0.00075 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 223 = 0.00448 0.00012 ## CloseGap 0 19 6 / 269 = 0.02230 0.00607 ## HealGap 0 13 8 / 301 = 0.02658 0.00082 ## MoveGap 0 0 0 / 107 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 234 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 111 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 219 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 108 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 513 = 0.00000 0.00000 ## CrossOver 0 0 0 / 105 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 104 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 119 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)D503 # TweakPsiPhi removed gap before (T0547)F93 # TweakPhi removed gap before (T0547)T534 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)K493 # TweakPsiPhi removed gap before (T0547)V522 # TweakPsiSubtree removed gap before (T0547)V300 # TweakPhi removed gap before (T0547)D452 # TweakPsiPhi removed gap before (T0547)Q226 # TweakPsiSubtree removed gap before (T0547)Q342 # TweakPsiSubtree removed gap before (T0547)L389 # TweakPhi removed gap before (T0547)L97 # TweakPsiSubtree removed gap before (T0547)L468 # TweakPsiPhi removed gap before (T0547)E470 # TweakPhi removed gap before (T0547)K414 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I537 # TweakPsiSubtree removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPsiPhi removed gap before (T0547)T228 # TweakPsiSubtree removed gap before (T0547)E125 # TweakPhi removed gap before (T0547)K357 # TweakPsiSubtree removed gap before (T0547)H329 # TweakPsiSubtree removed gap before (T0547)E338 # TweakPhi removed gap before (T0547)S539 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)G19 # TweakPsiPhi removed gap before (T0547)A189 # TweakPhi removed gap before (T0547)K493 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)L418 # TweakPsiSubtree removed gap before (T0547)D503 # TweakPsiSubtree removed gap before (T0547)H532 # TweakPsiSubtree removed gap before (T0547)A195 # TweakPsiSubtree removed gap before (T0547)L47 # TweakPsiSubtree removed gap before (T0547)L446 # TweakPsiPhi removed gap before (T0547)I15 # TweakPsiPhi removed gap before (T0547)K370 # TweakPhi removed gap before (T0547)N67 # TweakPhi removed gap before (T0547)N443 # TweakPsiSubtree removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)Y290 # TweakPsiSubtree removed gap before (T0547)K286 # TweakPsiPhi removed gap before (T0547)F324 # TweakPhi removed gap before (T0547)M149 # TweakPsiSubtree removed gap before (T0547)N18 # generation 177: best score out of 40: T0547.try1-opt2 204.26143 cost/residue, 780 clashes 0.13102 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 270 169 / 867 = 0.19493 0.00343 ## JiggleSubtree 2 46 29 / 424 = 0.06840 0.00520 ## JiggleSegment 5 57 38 / 533 = 0.07129 0.00433 ## OptSubtree 0 0 0 / 111 = 0.00000 0.00000 ## OptSegment 0 1 1 / 250 = 0.00400 0.00140 ## OptAllSegments 0 0 0 / 107 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 112 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 99 = 0.00000 0.00000 ## TweakPhiSubtree 57 501 294 / 1284 = 0.22897 0.00539 ## TweakPhiSegment 48 584 356 / 1261 = 0.28232 0.00573 ## TweakPsiSubtree 1 405 272 / 1241 = 0.21918 0.00530 ## TweakPsiSegment 3 621 407 / 1646 = 0.24727 0.00694 ## TweakPsiPhiSubtree 125 442 263 / 988 = 0.26619 0.00438 ## TweakPsiPhiSegment 114 382 213 / 871 = 0.24455 0.00378 ## TweakHbondSubtree 20 294 186 / 1020 = 0.18235 0.00417 ## TweakHbondSegment 15 350 197 / 1032 = 0.19089 0.00436 ## TweakMultimer 279 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 40 177 118 / 399 = 0.29574 0.00130 ## FixOmega 3 0 0 / 104 = 0.00000 0.00000 ## Backrub 183 263 124 / 591 = 0.20981 0.00222 ## BigBackrub 135 103 58 / 501 = 0.11577 0.00233 ## OneRotamer 0 315 152 / 1475 = 0.10305 0.00496 ## ClashingRotamer 1 3 1 / 187 = 0.00535 0.00070 ## ClusteredRotamer 18 5 3 / 157 = 0.01911 0.00075 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 223 = 0.00448 0.00012 ## CloseGap 0 19 6 / 269 = 0.02230 0.00607 ## HealGap 0 13 8 / 303 = 0.02640 0.00082 ## MoveGap 0 0 0 / 107 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 234 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 111 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 219 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 109 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 516 = 0.00000 0.00000 ## CrossOver 0 0 0 / 105 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 104 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 119 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)Q554 # TweakPhi removed gap before (T0547)L339 # TweakPhi removed gap before (T0547)D452 # TweakPsiPhi removed gap before (T0547)S608 # TweakPsiSubtree removed gap before (T0547)V522 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPhi removed gap before (T0547)I34 # TweakPsiPhi removed gap before (T0547)G273 # TweakPsiSubtree removed gap before (T0547)I550 # TweakPhi removed gap before (T0547)Y440 # TweakPhi removed gap before (T0547)D503 # TweakPsiSubtree removed gap before (T0547)V336 # TweakPsiPhi removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)I540 # TweakPsiPhi removed gap before (T0547)I167 # TweakPsiPhi removed gap before (T0547)N459 # TweakPsiPhi removed gap before (T0547)D466 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)V442 # TweakPhi removed gap before (T0547)F599 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPhi removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)I388 # TweakPhi removed gap before (T0547)I570 # TweakPsiSubtree removed gap before (T0547)I167 # TweakPhi removed gap before (T0547)F514 # TweakPsiSubtree removed gap before (T0547)I592 # TweakPsiPhi removed gap before (T0547)R185 # TweakPhi removed gap before (T0547)V516 # TweakPsiPhi removed gap before (T0547)I180 # TweakPhi removed gap before (T0547)K95 # TweakPsiPhi removed gap before (T0547)G159 # TweakPsiPhi removed gap before (T0547)V522 # TweakPsiSubtree removed gap before (T0547)L408 # TweakPsiSubtree removed gap before (T0547)Q89 # TweakPsiSubtree removed gap before (T0547)L446 # TweakPhi removed gap before (T0547)Y25 # TweakPhi removed gap before (T0547)N24 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L275 # TweakPsiSubtree removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)A121 # TweakPhi removed gap before (T0547)M261 # TweakPhi removed gap before (T0547)S490 # TweakPsiPhi removed gap before (T0547)F318 # TweakPhi removed gap before (T0547)L224 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)N141 # TweakPsiPhi removed gap before (T0547)L362 # TweakPsiPhi removed gap before (T0547)R50 # TweakPhi removed gap before (T0547)E12 # TweakPhi removed gap before (T0547)G181 # generation 178: best score out of 40: T0547.try1-opt2 204.25345 cost/residue, 780 clashes 0.13097 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 270 169 / 867 = 0.19493 0.00343 ## JiggleSubtree 2 46 29 / 425 = 0.06824 0.00518 ## JiggleSegment 5 57 38 / 533 = 0.07129 0.00433 ## OptSubtree 0 0 0 / 111 = 0.00000 0.00000 ## OptSegment 0 1 1 / 250 = 0.00400 0.00140 ## OptAllSegments 0 0 0 / 107 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 112 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 99 = 0.00000 0.00000 ## TweakPhiSubtree 57 504 294 / 1290 = 0.22791 0.00536 ## TweakPhiSegment 48 589 358 / 1274 = 0.28100 0.00568 ## TweakPsiSubtree 1 409 274 / 1248 = 0.21955 0.00531 ## TweakPsiSegment 3 626 411 / 1655 = 0.24834 0.00694 ## TweakPsiPhiSubtree 126 446 266 / 996 = 0.26707 0.00438 ## TweakPsiPhiSegment 116 384 215 / 879 = 0.24460 0.00377 ## TweakHbondSubtree 20 296 190 / 1028 = 0.18482 0.00415 ## TweakHbondSegment 15 351 197 / 1036 = 0.19015 0.00434 ## TweakMultimer 279 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 40 177 119 / 405 = 0.29383 0.00129 ## FixOmega 3 0 0 / 104 = 0.00000 0.00000 ## Backrub 186 267 127 / 601 = 0.21131 0.00221 ## BigBackrub 135 103 58 / 504 = 0.11508 0.00232 ## OneRotamer 0 315 152 / 1484 = 0.10243 0.00493 ## ClashingRotamer 1 3 1 / 187 = 0.00535 0.00070 ## ClusteredRotamer 18 5 3 / 158 = 0.01899 0.00075 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 224 = 0.00446 0.00012 ## CloseGap 0 19 6 / 269 = 0.02230 0.00607 ## HealGap 0 13 8 / 303 = 0.02640 0.00082 ## MoveGap 0 0 0 / 109 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 234 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 112 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 219 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 109 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 518 = 0.00000 0.00000 ## CrossOver 0 0 0 / 105 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 105 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 119 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)A345 # TweakPhi removed gap before (T0547)M261 # TweakPsiSubtree removed gap before (T0547)Q281 # TweakPsiPhi removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPsiSubtree removed gap before (T0547)E470 # TweakPsiSubtree removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPsiPhi removed gap before (T0547)L182 # TweakPsiSubtree removed gap before (T0547)D564 # TweakPhi removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)P243 # TweakPsiSubtree removed gap before (T0547)K102 # TweakPsiSubtree removed gap before (T0547)K264 # TweakPhi removed gap before (T0547)Q448 # TweakPsiSubtree removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)E320 # TweakPhi removed gap before (T0547)G77 # TweakPsiPhi removed gap before (T0547)N249 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I8 # TweakPsiPhi removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)G77 # TweakPsiPhi removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPsiPhi removed gap before (T0547)G512 # TweakPsiPhi removed gap before (T0547)L419 # TweakPsiSubtree removed gap before (T0547)K264 # TweakPhi removed gap before (T0547)L418 # TweakPsiSubtree removed gap before (T0547)I551 # TweakPsiPhi removed gap before (T0547)I319 # TweakPsiPhi removed gap before (T0547)T413 # TweakPhi removed gap before (T0547)F134 # TweakPsiSubtree removed gap before (T0547)F318 # TweakPsiSubtree removed gap before (T0547)L54 # TweakPsiSubtree removed gap before (T0547)T413 # TweakPhi removed gap before (T0547)K17 # TweakPhi removed gap before (T0547)I34 # TweakPhi removed gap before (T0547)S188 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Q89 # TweakPsiPhi removed gap before (T0547)T534 # TweakPhi removed gap before (T0547)D469 # TweakPhi removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)F301 # TweakPhi removed gap before (T0547)T228 # TweakPsiPhi removed gap before (T0547)Q520 # generation 179: best score out of 40: T0547.try1-opt2 204.11911 cost/residue, 780 clashes 0.13049 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 272 170 / 872 = 0.19495 0.00342 ## JiggleSubtree 2 46 29 / 425 = 0.06824 0.00518 ## JiggleSegment 5 57 38 / 533 = 0.07129 0.00433 ## OptSubtree 0 0 0 / 111 = 0.00000 0.00000 ## OptSegment 0 1 1 / 250 = 0.00400 0.00140 ## OptAllSegments 0 0 0 / 108 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 112 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 99 = 0.00000 0.00000 ## TweakPhiSubtree 58 504 294 / 1297 = 0.22668 0.00534 ## TweakPhiSegment 49 593 361 / 1281 = 0.28181 0.00566 ## TweakPsiSubtree 1 411 275 / 1255 = 0.21912 0.00539 ## TweakPsiSegment 3 631 417 / 1668 = 0.25000 0.00691 ## TweakPsiPhiSubtree 127 448 268 / 1001 = 0.26773 0.00438 ## TweakPsiPhiSegment 117 387 216 / 887 = 0.24352 0.00375 ## TweakHbondSubtree 20 296 190 / 1032 = 0.18411 0.00414 ## TweakHbondSegment 15 351 197 / 1043 = 0.18888 0.00431 ## TweakMultimer 280 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 42 183 122 / 413 = 0.29540 0.00133 ## FixOmega 3 0 0 / 104 = 0.00000 0.00000 ## Backrub 186 267 127 / 607 = 0.20923 0.00219 ## BigBackrub 137 103 58 / 505 = 0.11485 0.00231 ## OneRotamer 0 318 154 / 1495 = 0.10301 0.00491 ## ClashingRotamer 1 3 1 / 190 = 0.00526 0.00069 ## ClusteredRotamer 18 5 3 / 158 = 0.01899 0.00075 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 224 = 0.00446 0.00012 ## CloseGap 0 19 6 / 270 = 0.02222 0.00605 ## HealGap 0 13 8 / 305 = 0.02623 0.00081 ## MoveGap 0 0 0 / 110 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 234 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 113 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 219 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 109 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 520 = 0.00000 0.00000 ## CrossOver 0 0 0 / 105 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 105 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 119 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)Y255 # TweakPhi removed gap before (T0547)F14 # TweakPsiPhi removed gap before (T0547)T413 # TweakPhi removed gap before (T0547)R439 # TweakPsiSubtree removed gap before (T0547)E535 # TweakPsiSubtree removed gap before (T0547)L118 # TweakPsiSubtree removed gap before (T0547)V325 # TweakPhi removed gap before (T0547)K286 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPsiSubtree removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)N11 # TweakPsiSubtree removed gap before (T0547)E213 # TweakPhi removed gap before (T0547)E561 # TweakPsiSubtree removed gap before (T0547)M261 # TweakPhi removed gap before (T0547)Y366 # TweakPsiPhi removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)Y255 # TweakPsiSubtree removed gap before (T0547)T413 # TweakPsiSubtree removed gap before (T0547)F530 # TweakPhi removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)L465 # TweakPsiSubtree removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)K246 # TweakPsiSubtree removed gap before (T0547)L223 # TweakPsiSubtree removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)L108 # TweakPsiSubtree removed gap before (T0547)Q281 # TweakPhi removed gap before (T0547)G92 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)F318 # TweakPsiPhi removed gap before (T0547)L606 # TweakPsiSubtree removed gap before (T0547)K17 # TweakPhi removed gap before (T0547)Q237 # TweakPhi removed gap before (T0547)K414 # TweakPsiSubtree removed gap before (T0547)Q281 # TweakPhi removed gap before (T0547)F513 # TweakPsiPhi removed gap before (T0547)G77 # TweakPsiSubtree removed gap before (T0547)I32 # TweakPsiSubtree removed gap before (T0547)C483 # TweakPsiPhi removed gap before (T0547)L600 # TweakPhi removed gap before (T0547)K71 # TweakPsiPhi removed gap before (T0547)Y519 # TweakPsiSubtree removed gap before (T0547)A307 # TweakPsiPhi removed gap before (T0547)F66 # TweakPhi removed gap before (T0547)F73 # TweakPsiSubtree removed gap before (T0547)T256 # TweakPhi removed gap before (T0547)F599 # TweakPsiSubtree removed gap before (T0547)I551 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)A119 # TweakPsiSubtree removed gap before (T0547)L523 # TweakPhi removed gap before (T0547)A146 # generation 180: best score out of 40: T0547.try1-opt2 204.09796 cost/residue, 779 clashes 0.13046 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 273 171 / 875 = 0.19543 0.00345 ## JiggleSubtree 2 46 29 / 425 = 0.06824 0.00518 ## JiggleSegment 5 57 38 / 533 = 0.07129 0.00433 ## OptSubtree 0 0 0 / 111 = 0.00000 0.00000 ## OptSegment 0 1 1 / 250 = 0.00400 0.00140 ## OptAllSegments 0 0 0 / 108 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 112 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 99 = 0.00000 0.00000 ## TweakPhiSubtree 58 508 297 / 1306 = 0.22741 0.00535 ## TweakPhiSegment 49 594 362 / 1287 = 0.28127 0.00564 ## TweakPsiSubtree 1 415 278 / 1269 = 0.21907 0.00542 ## TweakPsiSegment 3 637 422 / 1682 = 0.25089 0.00687 ## TweakPsiPhiSubtree 127 451 270 / 1009 = 0.26759 0.00435 ## TweakPsiPhiSegment 117 388 217 / 890 = 0.24382 0.00375 ## TweakHbondSubtree 20 297 190 / 1037 = 0.18322 0.00412 ## TweakHbondSegment 15 351 197 / 1052 = 0.18726 0.00427 ## TweakMultimer 280 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 42 184 124 / 419 = 0.29594 0.00133 ## FixOmega 3 0 0 / 104 = 0.00000 0.00000 ## Backrub 188 268 127 / 610 = 0.20820 0.00218 ## BigBackrub 137 103 58 / 507 = 0.11440 0.00230 ## OneRotamer 0 321 155 / 1508 = 0.10279 0.00488 ## ClashingRotamer 1 3 1 / 190 = 0.00526 0.00069 ## ClusteredRotamer 18 5 3 / 158 = 0.01899 0.00075 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 224 = 0.00446 0.00012 ## CloseGap 0 19 6 / 270 = 0.02222 0.00605 ## HealGap 0 13 8 / 307 = 0.02606 0.00081 ## MoveGap 0 0 0 / 110 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 234 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 113 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 219 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 109 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 522 = 0.00000 0.00000 ## CrossOver 0 0 0 / 106 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 105 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 119 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)K28 # TweakPhi removed gap before (T0547)L529 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPhi removed gap before (T0547)D494 # TweakPsiPhi removed gap before (T0547)S188 # TweakPsiPhi removed gap before (T0547)G181 # TweakPsiPhi removed gap before (T0547)E148 # TweakPsiPhi removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)E213 # TweakPsiPhi removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)I166 # TweakPsiPhi removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)F453 # TweakPhi removed gap before (T0547)I551 # TweakPsiPhi removed gap before (T0547)E595 # TweakPsiSubtree removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)L186 # TweakPhi removed gap before (T0547)L560 # TweakPsiSubtree removed gap before (T0547)L182 # TweakPsiPhi removed gap before (T0547)L399 # TweakPsiSubtree removed gap before (T0547)A247 # TweakPhi removed gap before (T0547)Y565 # TweakPsiPhi removed gap before (T0547)Y491 # TweakPhi removed gap before (T0547)Y90 # TweakPsiSubtree removed gap before (T0547)V397 # TweakPsiSubtree removed gap before (T0547)N297 # TweakPhi removed gap before (T0547)K304 # TweakPsiSubtree removed gap before (T0547)G42 # TweakPsiSubtree removed gap before (T0547)D380 # TweakPhi removed gap before (T0547)N24 # TweakPhi removed gap before (T0547)K245 # TweakPhi removed gap before (T0547)K175 # TweakPhi removed gap before (T0547)G159 # TweakPhi removed gap before (T0547)V336 # TweakPsiPhi removed gap before (T0547)M571 # TweakPsiPhi removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)F340 # TweakPsiPhi removed gap before (T0547)K171 # TweakPhi removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)I129 # TweakPsiSubtree removed gap before (T0547)S112 # TweakPsiSubtree removed gap before (T0547)L418 # TweakPsiSubtree removed gap before (T0547)A165 # TweakPsiPhi removed gap before (T0547)L358 # TweakPsiPhi removed gap before (T0547)A165 # TweakPsiSubtree removed gap before (T0547)G205 # TweakPsiPhi removed gap before (T0547)R259 # TweakPsiSubtree removed gap before (T0547)I140 # TweakPhi removed gap before (T0547)K304 # generation 181: best score out of 40: T0547.try1-opt2 204.09424 cost/residue, 779 clashes 0.13045 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 274 171 / 878 = 0.19476 0.00343 ## JiggleSubtree 2 46 29 / 425 = 0.06824 0.00518 ## JiggleSegment 5 57 38 / 533 = 0.07129 0.00433 ## OptSubtree 0 0 0 / 111 = 0.00000 0.00000 ## OptSegment 0 1 1 / 250 = 0.00400 0.00140 ## OptAllSegments 0 0 0 / 108 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 112 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 99 = 0.00000 0.00000 ## TweakPhiSubtree 59 509 299 / 1313 = 0.22772 0.00533 ## TweakPhiSegment 49 597 364 / 1297 = 0.28065 0.00560 ## TweakPsiSubtree 1 419 281 / 1282 = 0.21919 0.00538 ## TweakPsiSegment 3 640 425 / 1691 = 0.25133 0.00686 ## TweakPsiPhiSubtree 130 456 275 / 1020 = 0.26961 0.00436 ## TweakPsiPhiSegment 118 390 219 / 896 = 0.24442 0.00372 ## TweakHbondSubtree 20 299 190 / 1042 = 0.18234 0.00410 ## TweakHbondSegment 15 352 199 / 1055 = 0.18863 0.00432 ## TweakMultimer 282 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 43 186 125 / 423 = 0.29551 0.00132 ## FixOmega 3 0 0 / 104 = 0.00000 0.00000 ## Backrub 188 271 129 / 614 = 0.21010 0.00217 ## BigBackrub 137 104 59 / 510 = 0.11569 0.00229 ## OneRotamer 0 323 155 / 1520 = 0.10197 0.00484 ## ClashingRotamer 1 3 1 / 190 = 0.00526 0.00069 ## ClusteredRotamer 18 5 3 / 159 = 0.01887 0.00074 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 224 = 0.00446 0.00012 ## CloseGap 0 19 6 / 270 = 0.02222 0.00605 ## HealGap 0 14 9 / 309 = 0.02913 0.00082 ## MoveGap 0 0 0 / 110 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 234 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 113 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 219 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 111 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 526 = 0.00000 0.00000 ## CrossOver 0 0 0 / 106 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 106 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 119 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)L224 # TweakPsiPhi removed gap before (T0547)T409 # TweakPhi removed gap before (T0547)H527 # TweakPhi removed gap before (T0547)F324 # TweakPsiPhi removed gap before (T0547)L362 # TweakPhi removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)L389 # TweakPsiPhi removed gap before (T0547)I212 # TweakPsiPhi removed gap before (T0547)K219 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)N575 # TweakPhi removed gap before (T0547)T130 # TweakPsiPhi removed gap before (T0547)M571 # TweakPhi removed gap before (T0547)F51 # TweakPsiPhi removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)E361 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPsiSubtree removed gap before (T0547)D422 # TweakPsiSubtree removed gap before (T0547)N601 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)S485 # TweakPsiPhi removed gap before (T0547)Y279 # TweakPhi removed gap before (T0547)A119 # TweakPsiSubtree removed gap before (T0547)I31 # TweakPsiPhi removed gap before (T0547)Y605 # TweakPsiSubtree removed gap before (T0547)A251 # TweakPsiPhi removed gap before (T0547)V336 # TweakPsiPhi removed gap before (T0547)A69 # TweakPhi removed gap before (T0547)N179 # TweakPhi removed gap before (T0547)K267 # TweakPsiPhi removed gap before (T0547)Y279 # TweakPhi removed gap before (T0547)D562 # TweakPsiSubtree removed gap before (T0547)D168 # TweakPhi removed gap before (T0547)I388 # TweakPsiSubtree removed gap before (T0547)K222 # TweakPsiPhi removed gap before (T0547)V336 # TweakPsiSubtree removed gap before (T0547)Q89 # TweakPsiSubtree removed gap before (T0547)K76 # TweakPhi removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)A569 # TweakPsiSubtree removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)I333 # TweakPsiPhi removed gap before (T0547)D33 # TweakPsiSubtree removed gap before (T0547)K493 # TweakPsiSubtree removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPsiPhi removed gap before (T0547)N80 # TweakPsiPhi removed gap before (T0547)V87 # TweakPhi removed gap before (T0547)M463 # TweakPsiPhi removed gap before (T0547)Q309 # TweakPhi removed gap before (T0547)I15 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPsiSubtree removed gap before (T0547)D428 # TweakPhi removed gap before (T0547)G192 # TweakPsiSubtree removed gap before (T0547)H151 # generation 182: best score out of 40: T0547.try1-opt2 204.06329 cost/residue, 776 clashes 0.13044 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 275 172 / 879 = 0.19568 0.00343 ## JiggleSubtree 2 46 29 / 425 = 0.06824 0.00518 ## JiggleSegment 5 57 38 / 535 = 0.07103 0.00431 ## OptSubtree 0 0 0 / 112 = 0.00000 0.00000 ## OptSegment 0 1 1 / 250 = 0.00400 0.00140 ## OptAllSegments 0 0 0 / 109 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 113 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 100 = 0.00000 0.00000 ## TweakPhiSubtree 59 516 306 / 1327 = 0.23060 0.00541 ## TweakPhiSegment 49 598 364 / 1300 = 0.28000 0.00558 ## TweakPsiSubtree 1 420 281 / 1287 = 0.21834 0.00536 ## TweakPsiSegment 3 647 430 / 1710 = 0.25146 0.00683 ## TweakPsiPhiSubtree 132 459 276 / 1029 = 0.26822 0.00434 ## TweakPsiPhiSegment 118 393 221 / 905 = 0.24420 0.00373 ## TweakHbondSubtree 21 300 191 / 1045 = 0.18278 0.00410 ## TweakHbondSegment 15 353 200 / 1059 = 0.18886 0.00434 ## TweakMultimer 285 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 43 189 125 / 427 = 0.29274 0.00131 ## FixOmega 3 0 0 / 104 = 0.00000 0.00000 ## Backrub 189 271 129 / 617 = 0.20908 0.00216 ## BigBackrub 137 104 59 / 512 = 0.11523 0.00228 ## OneRotamer 0 324 155 / 1531 = 0.10124 0.00481 ## ClashingRotamer 1 3 1 / 190 = 0.00526 0.00069 ## ClusteredRotamer 18 5 3 / 160 = 0.01875 0.00074 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 225 = 0.00444 0.00012 ## CloseGap 0 19 6 / 271 = 0.02214 0.00602 ## HealGap 0 14 9 / 310 = 0.02903 0.00081 ## MoveGap 0 0 0 / 110 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 234 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 113 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 219 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 111 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 528 = 0.00000 0.00000 ## CrossOver 0 0 0 / 106 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 107 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 119 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)L560 # TweakPsiSubtree removed gap before (T0547)Q89 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)D572 # TweakPsiPhi removed gap before (T0547)V300 # TweakPsiSubtree removed gap before (T0547)Y122 # TweakPsiPhi removed gap before (T0547)D434 # TweakPsiPhi removed gap before (T0547)F392 # TweakPsiSubtree removed gap before (T0547)K423 # TweakPsiSubtree removed gap before (T0547)N67 # TweakPsiPhi removed gap before (T0547)G517 # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPsiSubtree removed gap before (T0547)L419 # TweakPsiSubtree removed gap before (T0547)S579 # TweakPhi removed gap before (T0547)L275 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)G111 # TweakPsiSubtree removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)G524 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K589 # TweakPhi removed gap before (T0547)A427 # TweakPsiSubtree removed gap before (T0547)P52 # TweakPhi removed gap before (T0547)A30 # TweakPsiPhi removed gap before (T0547)Q58 # TweakPhi removed gap before (T0547)I129 # TweakPsiSubtree removed gap before (T0547)P84 # TweakPhi removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)M2 # TweakPsiSubtree removed gap before (T0547)I31 # TweakPsiPhi removed gap before (T0547)V442 # TweakPhi removed gap before (T0547)A170 # TweakPsiSubtree removed gap before (T0547)Q520 # TweakPhi removed gap before (T0547)L223 # TweakPsiPhi removed gap before (T0547)G421 # TweakPhi removed gap before (T0547)L218 # TweakPhi removed gap before (T0547)A326 # TweakPsiPhi removed gap before (T0547)E220 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)P451 # TweakPsiSubtree removed gap before (T0547)L497 # TweakPsiPhi removed gap before (T0547)E595 # TweakPsiSubtree removed gap before (T0547)F14 # TweakPsiSubtree removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)E294 # TweakPsiPhi removed gap before (T0547)F444 # TweakPsiPhi removed gap before (T0547)S475 # TweakPsiPhi removed gap before (T0547)G517 # TweakPsiSubtree removed gap before (T0547)S202 # TweakPhi removed gap before (T0547)I592 # TweakPsiSubtree removed gap before (T0547)S581 # TweakPhi removed gap before (T0547)N216 # TweakPhi removed gap before (T0547)D503 # TweakPhi removed gap before (T0547)E320 # TweakPhi removed gap before (T0547)F227 # generation 183: best score out of 40: T0547.try1-opt2 203.99785 cost/residue, 774 clashes 0.13044 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 275 172 / 882 = 0.19501 0.00342 ## JiggleSubtree 2 46 29 / 425 = 0.06824 0.00518 ## JiggleSegment 5 57 38 / 536 = 0.07090 0.00430 ## OptSubtree 0 0 0 / 112 = 0.00000 0.00000 ## OptSegment 0 1 1 / 250 = 0.00400 0.00140 ## OptAllSegments 0 0 0 / 109 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 114 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 100 = 0.00000 0.00000 ## TweakPhiSubtree 59 518 307 / 1339 = 0.22928 0.00537 ## TweakPhiSegment 50 601 366 / 1306 = 0.28025 0.00556 ## TweakPsiSubtree 1 425 284 / 1303 = 0.21796 0.00532 ## TweakPsiSegment 3 651 433 / 1721 = 0.25160 0.00680 ## TweakPsiPhiSubtree 132 459 276 / 1033 = 0.26718 0.00432 ## TweakPsiPhiSegment 119 395 222 / 913 = 0.24315 0.00371 ## TweakHbondSubtree 21 300 191 / 1048 = 0.18225 0.00409 ## TweakHbondSegment 15 356 201 / 1066 = 0.18856 0.00431 ## TweakMultimer 285 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 44 191 125 / 430 = 0.29070 0.00130 ## FixOmega 3 0 0 / 104 = 0.00000 0.00000 ## Backrub 190 274 131 / 622 = 0.21061 0.00220 ## BigBackrub 138 105 60 / 514 = 0.11673 0.00240 ## OneRotamer 0 326 155 / 1544 = 0.10039 0.00477 ## ClashingRotamer 1 3 1 / 190 = 0.00526 0.00069 ## ClusteredRotamer 18 5 3 / 161 = 0.01863 0.00073 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 225 = 0.00444 0.00012 ## CloseGap 0 19 6 / 271 = 0.02214 0.00602 ## HealGap 0 14 9 / 312 = 0.02885 0.00081 ## MoveGap 0 0 0 / 111 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 234 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 113 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 219 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 111 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 528 = 0.00000 0.00000 ## CrossOver 0 0 0 / 107 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 107 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 119 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)Q281 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPsiPhi removed gap before (T0547)R183 # TweakPsiSubtree removed gap before (T0547)K267 # TweakPsiSubtree removed gap before (T0547)D33 # TweakPhi removed gap before (T0547)M571 # TweakPsiSubtree removed gap before (T0547)I551 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)M571 # TweakPhi removed gap before (T0547)L420 # TweakPhi removed gap before (T0547)N425 # TweakPsiSubtree removed gap before (T0547)Y366 # TweakPsiPhi removed gap before (T0547)N289 # TweakPsiPhi removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)L499 # TweakPsiPhi removed gap before (T0547)F318 # TweakPsiPhi removed gap before (T0547)N96 # TweakPsiSubtree removed gap before (T0547)L362 # TweakPhi removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)A374 # TweakPsiSubtree removed gap before (T0547)K415 # TweakPhi removed gap before (T0547)E546 # TweakPsiSubtree removed gap before (T0547)V331 # TweakPhi removed gap before (T0547)L339 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N152 # TweakPsiPhi removed gap before (T0547)I15 # TweakPsiSubtree removed gap before (T0547)I550 # TweakPhi removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)H233 # TweakPsiSubtree removed gap before (T0547)L378 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPhi removed gap before (T0547)F93 # TweakPsiSubtree removed gap before (T0547)F66 # TweakPhi removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPhi removed gap before (T0547)Y605 # TweakPhi removed gap before (T0547)K196 # TweakPsiSubtree removed gap before (T0547)D566 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K68 # TweakPsiPhi removed gap before (T0547)K71 # TweakPsiSubtree removed gap before (T0547)K86 # TweakPsiSubtree removed gap before (T0547)K283 # TweakPsiSubtree removed gap before (T0547)E250 # TweakPsiPhi removed gap before (T0547)I241 # TweakPsiSubtree removed gap before (T0547)I537 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E164 # TweakPsiSubtree removed gap before (T0547)T482 # TweakPsiPhi removed gap before (T0547)G19 # TweakPsiSubtree removed gap before (T0547)K246 # generation 184: best score out of 40: T0547.try1-opt2 203.87082 cost/residue, 773 clashes 0.13044 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 276 172 / 887 = 0.19391 0.00340 ## JiggleSubtree 2 46 29 / 425 = 0.06824 0.00518 ## JiggleSegment 5 57 38 / 537 = 0.07076 0.00430 ## OptSubtree 0 0 0 / 112 = 0.00000 0.00000 ## OptSegment 0 1 1 / 250 = 0.00400 0.00140 ## OptAllSegments 0 0 0 / 109 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 115 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 100 = 0.00000 0.00000 ## TweakPhiSubtree 59 521 307 / 1349 = 0.22758 0.00533 ## TweakPhiSegment 50 604 366 / 1311 = 0.27918 0.00554 ## TweakPsiSubtree 1 431 287 / 1319 = 0.21759 0.00531 ## TweakPsiSegment 3 655 436 / 1735 = 0.25130 0.00675 ## TweakPsiPhiSubtree 133 460 276 / 1036 = 0.26641 0.00431 ## TweakPsiPhiSegment 121 397 224 / 920 = 0.24348 0.00370 ## TweakHbondSubtree 21 300 191 / 1053 = 0.18139 0.00407 ## TweakHbondSegment 15 359 204 / 1075 = 0.18977 0.00431 ## TweakMultimer 288 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 44 192 126 / 433 = 0.29099 0.00130 ## FixOmega 3 0 0 / 104 = 0.00000 0.00000 ## Backrub 190 275 131 / 628 = 0.20860 0.00218 ## BigBackrub 142 105 60 / 516 = 0.11628 0.00239 ## OneRotamer 0 329 157 / 1553 = 0.10109 0.00484 ## ClashingRotamer 1 3 1 / 190 = 0.00526 0.00069 ## ClusteredRotamer 18 5 3 / 162 = 0.01852 0.00073 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 226 = 0.00442 0.00012 ## CloseGap 0 19 6 / 271 = 0.02214 0.00602 ## HealGap 0 14 9 / 312 = 0.02885 0.00081 ## MoveGap 0 0 0 / 111 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 235 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 113 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 219 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 111 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 529 = 0.00000 0.00000 ## CrossOver 0 0 0 / 107 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 107 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 119 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)L218 # TweakPsiPhi removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)D7 # TweakPhi removed gap before (T0547)C483 # TweakPhi removed gap before (T0547)M525 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)I573 # TweakPsiPhi removed gap before (T0547)N603 # TweakPhi removed gap before (T0547)M571 # TweakPhi removed gap before (T0547)E488 # TweakPsiPhi removed gap before (T0547)S477 # TweakPsiPhi removed gap before (T0547)K286 # TweakPsiPhi removed gap before (T0547)I153 # TweakPhi removed gap before (T0547)F513 # TweakPhi removed gap before (T0547)R183 # TweakPsiPhi removed gap before (T0547)D360 # TweakPhi removed gap before (T0547)A330 # TweakPhi removed gap before (T0547)V611 # TweakPsiPhi removed gap before (T0547)L583 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N459 # TweakPsiPhi removed gap before (T0547)G235 # TweakPsiSubtree removed gap before (T0547)V436 # TweakPsiPhi removed gap before (T0547)A170 # TweakPhi removed gap before (T0547)A165 # TweakPsiPhi removed gap before (T0547)W479 # TweakPsiSubtree removed gap before (T0547)Q448 # TweakPsiSubtree removed gap before (T0547)L275 # TweakPsiPhi removed gap before (T0547)L418 # TweakPsiSubtree removed gap before (T0547)G181 # TweakPhi removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)R323 # TweakPhi removed gap before (T0547)E521 # TweakPhi removed gap before (T0547)G150 # TweakPsiPhi removed gap before (T0547)L182 # TweakPsiSubtree removed gap before (T0547)G143 # TweakPhi removed gap before (T0547)A276 # TweakPsiPhi removed gap before (T0547)L258 # TweakPsiPhi removed gap before (T0547)Y295 # TweakPsiPhi removed gap before (T0547)G107 # TweakPsiSubtree removed gap before (T0547)N24 # TweakPhi removed gap before (T0547)E548 # TweakPhi removed gap before (T0547)Y545 # TweakPsiPhi removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)P335 # TweakPhi removed gap before (T0547)E26 # TweakPhi removed gap before (T0547)H231 # TweakPhi removed gap before (T0547)K353 # generation 185: best score out of 40: T0547.try1-opt2 203.87082 cost/residue, 773 clashes 0.13044 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 279 174 / 894 = 0.19463 0.00338 ## JiggleSubtree 2 46 29 / 425 = 0.06824 0.00518 ## JiggleSegment 5 57 38 / 537 = 0.07076 0.00430 ## OptSubtree 0 0 0 / 112 = 0.00000 0.00000 ## OptSegment 0 1 1 / 250 = 0.00400 0.00140 ## OptAllSegments 0 0 0 / 110 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 116 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 100 = 0.00000 0.00000 ## TweakPhiSubtree 59 527 311 / 1364 = 0.22801 0.00532 ## TweakPhiSegment 50 607 369 / 1317 = 0.28018 0.00553 ## TweakPsiSubtree 1 432 287 / 1325 = 0.21660 0.00528 ## TweakPsiSegment 3 656 436 / 1739 = 0.25072 0.00674 ## TweakPsiPhiSubtree 133 463 277 / 1044 = 0.26533 0.00429 ## TweakPsiPhiSegment 122 400 226 / 929 = 0.24327 0.00369 ## TweakHbondSubtree 21 301 192 / 1057 = 0.18165 0.00407 ## TweakHbondSegment 15 359 204 / 1081 = 0.18871 0.00428 ## TweakMultimer 290 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 45 196 126 / 437 = 0.28833 0.00129 ## FixOmega 3 0 0 / 105 = 0.00000 0.00000 ## Backrub 191 279 131 / 634 = 0.20662 0.00216 ## BigBackrub 143 106 60 / 523 = 0.11472 0.00236 ## OneRotamer 0 329 157 / 1562 = 0.10051 0.00481 ## ClashingRotamer 1 3 1 / 190 = 0.00526 0.00069 ## ClusteredRotamer 20 5 3 / 162 = 0.01852 0.00073 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 228 = 0.00439 0.00012 ## CloseGap 0 19 6 / 271 = 0.02214 0.00602 ## HealGap 0 14 9 / 313 = 0.02875 0.00080 ## MoveGap 0 0 0 / 111 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 235 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 114 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 219 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 111 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 529 = 0.00000 0.00000 ## CrossOver 0 0 0 / 108 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 108 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 119 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)E285 # TweakPsiPhi removed gap before (T0547)E220 # TweakPsiPhi removed gap before (T0547)T473 # TweakPsiSubtree removed gap before (T0547)L529 # TweakPsiPhi removed gap before (T0547)G181 # TweakPsiPhi removed gap before (T0547)L389 # TweakPhi removed gap before (T0547)F392 # TweakPsiSubtree removed gap before (T0547)Y519 # TweakPhi removed gap before (T0547)K589 # TweakPsiPhi removed gap before (T0547)S112 # TweakPhi removed gap before (T0547)I609 # TweakPhi removed gap before (T0547)I333 # TweakPsiSubtree removed gap before (T0547)D40 # TweakPhi removed gap before (T0547)Y366 # TweakPhi removed gap before (T0547)Q424 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L258 # TweakPhi removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)Y290 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPsiPhi removed gap before (T0547)V191 # TweakPsiSubtree removed gap before (T0547)T531 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K267 # TweakPhi removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)G544 # TweakPsiPhi removed gap before (T0547)N124 # TweakPhi removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)F444 # TweakPsiSubtree removed gap before (T0547)L583 # TweakPhi removed gap before (T0547)K27 # TweakPhi removed gap before (T0547)V184 # TweakPhi removed gap before (T0547)I350 # TweakPsiPhi removed gap before (T0547)D103 # TweakPsiSubtree removed gap before (T0547)L54 # TweakPsiSubtree removed gap before (T0547)Q588 # TweakPsiPhi removed gap before (T0547)Y440 # TweakPsiSubtree removed gap before (T0547)K607 # TweakPsiPhi removed gap before (T0547)K17 # TweakPsiSubtree removed gap before (T0547)D494 # TweakPhi removed gap before (T0547)G143 # TweakPsiPhi removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)L211 # TweakPsiPhi removed gap before (T0547)I254 # TweakPsiPhi removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)Q424 # TweakPhi removed gap before (T0547)I478 # TweakPsiSubtree removed gap before (T0547)D466 # Healed gap before (T0547)I55 residual break only 0.053 # generation 186: best score out of 40: T0547.try1-opt2 203.86485 cost/residue, 768 clashes 0.13044 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 280 175 / 896 = 0.19531 0.00337 ## JiggleSubtree 2 46 29 / 426 = 0.06808 0.00517 ## JiggleSegment 5 57 38 / 538 = 0.07063 0.00429 ## OptSubtree 0 0 0 / 112 = 0.00000 0.00000 ## OptSegment 0 1 1 / 251 = 0.00398 0.00140 ## OptAllSegments 0 0 0 / 110 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 117 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 100 = 0.00000 0.00000 ## TweakPhiSubtree 59 534 312 / 1378 = 0.22642 0.00528 ## TweakPhiSegment 50 609 369 / 1320 = 0.27955 0.00552 ## TweakPsiSubtree 1 435 289 / 1333 = 0.21680 0.00525 ## TweakPsiSegment 3 661 441 / 1747 = 0.25243 0.00671 ## TweakPsiPhiSubtree 135 464 279 / 1050 = 0.26571 0.00433 ## TweakPsiPhiSegment 124 405 228 / 939 = 0.24281 0.00370 ## TweakHbondSubtree 21 301 192 / 1058 = 0.18147 0.00406 ## TweakHbondSegment 15 359 204 / 1086 = 0.18785 0.00426 ## TweakMultimer 294 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 46 198 128 / 444 = 0.28829 0.00127 ## FixOmega 3 0 0 / 105 = 0.00000 0.00000 ## Backrub 193 281 132 / 638 = 0.20690 0.00215 ## BigBackrub 145 106 60 / 528 = 0.11364 0.00234 ## OneRotamer 0 332 160 / 1575 = 0.10159 0.00481 ## ClashingRotamer 1 3 1 / 190 = 0.00526 0.00069 ## ClusteredRotamer 21 5 3 / 164 = 0.01829 0.00072 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 230 = 0.00435 0.00011 ## CloseGap 0 19 6 / 271 = 0.02214 0.00602 ## HealGap 0 15 9 / 317 = 0.02839 0.00079 ## MoveGap 0 0 0 / 111 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 235 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 116 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 219 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 111 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 529 = 0.00000 0.00000 ## CrossOver 0 0 0 / 108 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 108 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 119 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)P356 # TweakPsiSubtree removed gap before (T0547)G199 # TweakPhi removed gap before (T0547)F498 # TweakPsiSubtree removed gap before (T0547)I350 # TweakPsiPhi removed gap before (T0547)I573 # TweakPsiPhi removed gap before (T0547)N580 # TweakPhi removed gap before (T0547)I129 # TweakPsiPhi removed gap before (T0547)I193 # TweakPsiPhi removed gap before (T0547)L391 # TweakPsiSubtree removed gap before (T0547)G421 # TweakPsiPhi removed gap before (T0547)E457 # TweakPhi removed gap before (T0547)L217 # TweakPsiPhi removed gap before (T0547)H568 # TweakPhi removed gap before (T0547)F204 # TweakPsiSubtree removed gap before (T0547)E225 # TweakPsiSubtree removed gap before (T0547)S280 # TweakPhi removed gap before (T0547)A127 # TweakPhi removed gap before (T0547)N541 # TweakPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)V611 # TweakPsiPhi removed gap before (T0547)I302 # TweakPsiPhi removed gap before (T0547)V299 # TweakPsiPhi removed gap before (T0547)L339 # TweakPsiPhi removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)I241 # TweakPsiPhi removed gap before (T0547)K526 # TweakPhi removed gap before (T0547)L596 # TweakPsiPhi removed gap before (T0547)E406 # TweakPhi removed gap before (T0547)I359 # TweakPsiSubtree removed gap before (T0547)E546 # TweakPsiSubtree removed gap before (T0547)Y279 # TweakPsiPhi removed gap before (T0547)Q448 # TweakPsiPhi removed gap before (T0547)F392 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPsiSubtree removed gap before (T0547)M261 # TweakPsiSubtree removed gap before (T0547)Y290 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)K20 # TweakPhi removed gap before (T0547)I269 # TweakPhi removed gap before (T0547)L223 # TweakPsiSubtree removed gap before (T0547)K196 # TweakPhi removed gap before (T0547)L429 # TweakPsiPhi removed gap before (T0547)S485 # TweakPsiPhi removed gap before (T0547)F51 # TweakPsiPhi removed gap before (T0547)S475 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPsiPhi removed gap before (T0547)I34 # generation 187: best score out of 40: T0547.try1-opt2 203.82413 cost/residue, 773 clashes 0.12975 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 280 176 / 900 = 0.19556 0.00336 ## JiggleSubtree 2 46 29 / 427 = 0.06792 0.00516 ## JiggleSegment 5 57 38 / 538 = 0.07063 0.00429 ## OptSubtree 0 0 0 / 112 = 0.00000 0.00000 ## OptSegment 0 1 1 / 252 = 0.00397 0.00139 ## OptAllSegments 0 0 0 / 110 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 117 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 100 = 0.00000 0.00000 ## TweakPhiSubtree 59 537 313 / 1386 = 0.22583 0.00528 ## TweakPhiSegment 50 611 371 / 1326 = 0.27979 0.00549 ## TweakPsiSubtree 1 439 292 / 1339 = 0.21807 0.00525 ## TweakPsiSegment 3 667 446 / 1759 = 0.25355 0.00674 ## TweakPsiPhiSubtree 137 466 280 / 1055 = 0.26540 0.00431 ## TweakPsiPhiSegment 126 409 231 / 954 = 0.24214 0.00367 ## TweakHbondSubtree 21 302 193 / 1061 = 0.18190 0.00405 ## TweakHbondSegment 15 361 206 / 1092 = 0.18864 0.00425 ## TweakMultimer 298 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 47 200 128 / 448 = 0.28571 0.00126 ## FixOmega 3 0 0 / 105 = 0.00000 0.00000 ## Backrub 194 281 132 / 644 = 0.20497 0.00213 ## BigBackrub 145 106 60 / 531 = 0.11299 0.00232 ## OneRotamer 0 333 161 / 1587 = 0.10145 0.00478 ## ClashingRotamer 1 3 1 / 190 = 0.00526 0.00069 ## ClusteredRotamer 21 5 3 / 164 = 0.01829 0.00072 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 230 = 0.00435 0.00011 ## CloseGap 0 19 6 / 271 = 0.02214 0.00602 ## HealGap 0 15 9 / 319 = 0.02821 0.00079 ## MoveGap 0 0 0 / 112 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 236 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 116 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 219 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 112 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 531 = 0.00000 0.00000 ## CrossOver 0 0 0 / 108 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 108 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 120 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)F318 # TweakPsiPhi removed gap before (T0547)I369 # TweakPhi removed gap before (T0547)A276 # TweakPsiSubtree removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)V584 # TweakPsiSubtree removed gap before (T0547)D136 # TweakPhi removed gap before (T0547)K27 # TweakPsiPhi removed gap before (T0547)W194 # TweakPhi removed gap before (T0547)A374 # TweakPsiSubtree removed gap before (T0547)G192 # TweakPhi removed gap before (T0547)K264 # TweakPsiPhi removed gap before (T0547)T534 # TweakPsiSubtree removed gap before (T0547)Q89 # TweakPsiSubtree removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)L54 # TweakPhi removed gap before (T0547)L163 # TweakPhi removed gap before (T0547)G133 # TweakPsiSubtree removed gap before (T0547)E115 # TweakPsiSubtree removed gap before (T0547)A189 # TweakPsiSubtree removed gap before (T0547)A170 # TweakPsiPhi removed gap before (T0547)G235 # TweakPsiPhi removed gap before (T0547)F510 # TweakPsiSubtree removed gap before (T0547)E386 # TweakPhi removed gap before (T0547)E138 # TweakPsiSubtree removed gap before (T0547)E240 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPsiPhi removed gap before (T0547)R288 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)G604 # TweakPhi removed gap before (T0547)K177 # TweakPsiPhi removed gap before (T0547)K526 # TweakPsiPhi removed gap before (T0547)A247 # TweakPsiPhi removed gap before (T0547)I317 # TweakPsiPhi removed gap before (T0547)M571 # TweakPsiSubtree removed gap before (T0547)G190 # TweakPsiSubtree removed gap before (T0547)Q400 # TweakPhi removed gap before (T0547)L303 # TweakPhi removed gap before (T0547)A569 # TweakPsiSubtree removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPhi removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)Y83 # TweakPsiPhi removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)Y396 # TweakPsiPhi removed gap before (T0547)T531 # TweakPsiSubtree removed gap before (T0547)K71 # TweakPhi removed gap before (T0547)K27 # TweakPsiSubtree removed gap before (T0547)N459 # generation 188: best score out of 40: T0547.try1-opt2 203.76912 cost/residue, 775 clashes 0.12981 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 280 176 / 902 = 0.19512 0.00335 ## JiggleSubtree 2 46 29 / 427 = 0.06792 0.00516 ## JiggleSegment 5 57 38 / 538 = 0.07063 0.00429 ## OptSubtree 0 0 0 / 113 = 0.00000 0.00000 ## OptSegment 0 1 1 / 252 = 0.00397 0.00139 ## OptAllSegments 0 0 0 / 110 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 117 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 100 = 0.00000 0.00000 ## TweakPhiSubtree 59 543 316 / 1397 = 0.22620 0.00528 ## TweakPhiSegment 51 613 371 / 1335 = 0.27790 0.00545 ## TweakPsiSubtree 1 443 295 / 1349 = 0.21868 0.00530 ## TweakPsiSegment 3 670 448 / 1769 = 0.25325 0.00674 ## TweakPsiPhiSubtree 138 468 281 / 1065 = 0.26385 0.00428 ## TweakPsiPhiSegment 127 411 232 / 961 = 0.24142 0.00367 ## TweakHbondSubtree 22 302 194 / 1065 = 0.18216 0.00404 ## TweakHbondSegment 15 363 207 / 1097 = 0.18870 0.00423 ## TweakMultimer 299 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 47 201 128 / 449 = 0.28508 0.00126 ## FixOmega 3 0 0 / 105 = 0.00000 0.00000 ## Backrub 195 284 134 / 651 = 0.20584 0.00213 ## BigBackrub 145 106 60 / 534 = 0.11236 0.00231 ## OneRotamer 0 333 161 / 1597 = 0.10081 0.00475 ## ClashingRotamer 1 3 1 / 190 = 0.00526 0.00069 ## ClusteredRotamer 21 5 3 / 165 = 0.01818 0.00071 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 230 = 0.00435 0.00011 ## CloseGap 0 19 6 / 272 = 0.02206 0.00600 ## HealGap 0 15 9 / 321 = 0.02804 0.00078 ## MoveGap 0 0 0 / 112 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 236 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 116 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 223 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 112 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 532 = 0.00000 0.00000 ## CrossOver 0 0 0 / 108 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 108 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 121 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)G610 # TweakPsiSubtree removed gap before (T0547)L411 # TweakPsiPhi removed gap before (T0547)K68 # TweakPhi removed gap before (T0547)G512 # TweakPhi removed gap before (T0547)I412 # TweakPsiPhi removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPhi removed gap before (T0547)K526 # TweakPhi removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)L420 # TweakPsiPhi removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)R577 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPsiSubtree removed gap before (T0547)F514 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L468 # TweakPsiSubtree removed gap before (T0547)A327 # TweakPsiSubtree removed gap before (T0547)Q437 # TweakPsiPhi removed gap before (T0547)I388 # TweakPsiPhi removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)E521 # TweakPsiPhi removed gap before (T0547)Q56 # TweakPsiSubtree removed gap before (T0547)T239 # TweakPsiPhi removed gap before (T0547)G192 # TweakPsiSubtree removed gap before (T0547)E548 # TweakPsiSubtree removed gap before (T0547)K175 # TweakPsiSubtree removed gap before (T0547)V21 # TweakPhi removed gap before (T0547)Q56 # TweakPsiSubtree removed gap before (T0547)D383 # TweakPsiPhi removed gap before (T0547)A431 # TweakPsiPhi removed gap before (T0547)V584 # TweakPsiSubtree removed gap before (T0547)I34 # TweakPhi removed gap before (T0547)I333 # TweakPhi removed gap before (T0547)K36 # TweakPsiSubtree removed gap before (T0547)E60 # TweakPhi removed gap before (T0547)L394 # TweakPsiSubtree removed gap before (T0547)G64 # TweakPhi removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)Y295 # TweakPsiSubtree removed gap before (T0547)E285 # TweakPhi removed gap before (T0547)R288 # TweakPhi removed gap before (T0547)F204 # TweakPhi removed gap before (T0547)L217 # TweakPsiSubtree removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)G274 # TweakPhi removed gap before (T0547)G111 # TweakPhi removed gap before (T0547)V21 # generation 189: best score out of 40: T0547.try1-opt2 203.75012 cost/residue, 775 clashes 0.12968 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 283 177 / 907 = 0.19515 0.00340 ## JiggleSubtree 2 46 29 / 427 = 0.06792 0.00516 ## JiggleSegment 5 57 38 / 539 = 0.07050 0.00428 ## OptSubtree 0 0 0 / 114 = 0.00000 0.00000 ## OptSegment 0 1 1 / 252 = 0.00397 0.00139 ## OptAllSegments 0 0 0 / 110 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 117 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 100 = 0.00000 0.00000 ## TweakPhiSubtree 59 546 318 / 1406 = 0.22617 0.00525 ## TweakPhiSegment 51 614 373 / 1342 = 0.27794 0.00543 ## TweakPsiSubtree 1 448 298 / 1368 = 0.21784 0.00524 ## TweakPsiSegment 3 676 450 / 1782 = 0.25253 0.00669 ## TweakPsiPhiSubtree 140 468 281 / 1067 = 0.26336 0.00427 ## TweakPsiPhiSegment 129 414 232 / 968 = 0.23967 0.00365 ## TweakHbondSubtree 22 305 195 / 1070 = 0.18224 0.00404 ## TweakHbondSegment 15 364 207 / 1102 = 0.18784 0.00422 ## TweakMultimer 304 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 47 202 128 / 453 = 0.28256 0.00125 ## FixOmega 3 0 0 / 105 = 0.00000 0.00000 ## Backrub 195 285 134 / 657 = 0.20396 0.00211 ## BigBackrub 146 107 60 / 538 = 0.11152 0.00229 ## OneRotamer 0 334 162 / 1603 = 0.10106 0.00474 ## ClashingRotamer 1 3 1 / 190 = 0.00526 0.00069 ## ClusteredRotamer 21 5 3 / 165 = 0.01818 0.00071 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 230 = 0.00435 0.00011 ## CloseGap 0 19 6 / 273 = 0.02198 0.00598 ## HealGap 0 15 9 / 322 = 0.02795 0.00078 ## MoveGap 0 0 0 / 112 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 237 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 116 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 223 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 112 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 533 = 0.00000 0.00000 ## CrossOver 0 0 0 / 109 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 109 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 121 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)S485 # TweakPhi removed gap before (T0547)L38 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPhi removed gap before (T0547)L411 # TweakPsiSubtree removed gap before (T0547)W194 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)D383 # TweakPsiSubtree removed gap before (T0547)D103 # TweakPhi removed gap before (T0547)N425 # TweakPsiSubtree removed gap before (T0547)A518 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPhi removed gap before (T0547)D602 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPsiPhi removed gap before (T0547)V191 # TweakPsiPhi removed gap before (T0547)G544 # TweakPhi removed gap before (T0547)V516 # TweakPsiSubtree removed gap before (T0547)G610 # TweakPsiPhi removed gap before (T0547)V522 # TweakPsiPhi removed gap before (T0547)G262 # TweakPhi removed gap before (T0547)L224 # TweakPsiPhi removed gap before (T0547)D572 # TweakPsiPhi removed gap before (T0547)K28 # TweakPsiSubtree removed gap before (T0547)P533 # TweakPsiPhi removed gap before (T0547)E26 # TweakPsiSubtree removed gap before (T0547)E561 # TweakPsiSubtree removed gap before (T0547)V184 # TweakPhi removed gap before (T0547)E60 # TweakPsiPhi removed gap before (T0547)T228 # TweakPsiPhi removed gap before (T0547)Q281 # TweakPsiSubtree removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)D562 # TweakPhi removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)E115 # TweakPhi removed gap before (T0547)S445 # TweakPsiSubtree removed gap before (T0547)E308 # TweakPsiPhi removed gap before (T0547)A170 # TweakPhi removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)A536 # TweakPsiSubtree removed gap before (T0547)I34 # TweakPsiSubtree removed gap before (T0547)S579 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)M450 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPhi removed gap before (T0547)Q588 # TweakPhi removed gap before (T0547)I32 # TweakPsiSubtree removed gap before (T0547)A127 # TweakPhi removed gap before (T0547)G199 # TweakPsiPhi removed gap before (T0547)E162 # TweakPsiSubtree removed gap before (T0547)S490 # TweakPsiSubtree removed gap before (T0547)T473 # TweakPsiPhi removed gap before (T0547)E488 # TweakPhi removed gap before (T0547)Y491 # TweakPhi removed gap before (T0547)F301 # TweakPsiSubtree removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPsiSubtree removed gap before (T0547)L339 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPsiPhi removed gap before (T0547)W479 # generation 190: best score out of 40: T0547.try1-opt2 203.73958 cost/residue, 774 clashes 0.12947 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 284 178 / 912 = 0.19518 0.00339 ## JiggleSubtree 2 46 29 / 427 = 0.06792 0.00516 ## JiggleSegment 5 57 38 / 539 = 0.07050 0.00428 ## OptSubtree 0 0 0 / 114 = 0.00000 0.00000 ## OptSegment 0 1 1 / 252 = 0.00397 0.00139 ## OptAllSegments 0 0 0 / 110 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 117 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 101 = 0.00000 0.00000 ## TweakPhiSubtree 60 551 321 / 1423 = 0.22558 0.00520 ## TweakPhiSegment 51 616 375 / 1344 = 0.27902 0.00544 ## TweakPsiSubtree 1 452 302 / 1382 = 0.21852 0.00521 ## TweakPsiSegment 3 680 451 / 1795 = 0.25125 0.00666 ## TweakPsiPhiSubtree 140 471 284 / 1073 = 0.26468 0.00428 ## TweakPsiPhiSegment 131 417 235 / 975 = 0.24103 0.00368 ## TweakHbondSubtree 22 307 196 / 1081 = 0.18131 0.00400 ## TweakHbondSegment 15 365 207 / 1104 = 0.18750 0.00421 ## TweakMultimer 310 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 47 202 128 / 454 = 0.28194 0.00125 ## FixOmega 3 0 0 / 105 = 0.00000 0.00000 ## Backrub 198 286 134 / 659 = 0.20334 0.00211 ## BigBackrub 146 108 61 / 540 = 0.11296 0.00229 ## OneRotamer 0 335 163 / 1612 = 0.10112 0.00472 ## ClashingRotamer 1 3 1 / 190 = 0.00526 0.00069 ## ClusteredRotamer 21 5 3 / 165 = 0.01818 0.00071 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 233 = 0.00429 0.00011 ## CloseGap 0 19 6 / 273 = 0.02198 0.00598 ## HealGap 0 15 9 / 323 = 0.02786 0.00078 ## MoveGap 0 0 0 / 112 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 239 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 117 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 224 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 112 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 533 = 0.00000 0.00000 ## CrossOver 0 0 0 / 109 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 109 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 121 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)G517 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPsiSubtree removed gap before (T0547)L339 # TweakPhi removed gap before (T0547)K95 # TweakPsiSubtree removed gap before (T0547)G395 # TweakPsiPhi removed gap before (T0547)V584 # TweakPsiPhi removed gap before (T0547)F204 # TweakPsiSubtree removed gap before (T0547)H532 # TweakPsiSubtree removed gap before (T0547)A307 # TweakPhi removed gap before (T0547)N404 # TweakPsiSubtree removed gap before (T0547)S555 # TweakPsiSubtree removed gap before (T0547)I573 # TweakPsiSubtree removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)V300 # TweakPsiPhi removed gap before (T0547)E546 # TweakPsiPhi removed gap before (T0547)D503 # TweakPsiPhi removed gap before (T0547)V300 # TweakPsiSubtree removed gap before (T0547)F453 # TweakPsiSubtree removed gap before (T0547)E225 # TweakPsiPhi removed gap before (T0547)A119 # TweakPhi removed gap before (T0547)Q226 # TweakPsiSubtree removed gap before (T0547)L155 # TweakPsiPhi removed gap before (T0547)K283 # TweakPsiPhi removed gap before (T0547)Q58 # TweakPsiPhi removed gap before (T0547)S372 # TweakPsiPhi removed gap before (T0547)V35 # TweakPsiSubtree removed gap before (T0547)I212 # TweakPsiSubtree removed gap before (T0547)I333 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)V300 # TweakPsiPhi removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)E386 # TweakPhi removed gap before (T0547)N123 # TweakPhi removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)L155 # TweakPsiPhi removed gap before (T0547)G190 # TweakPhi removed gap before (T0547)I269 # TweakPhi removed gap before (T0547)E115 # TweakPsiPhi removed gap before (T0547)F282 # TweakPhi removed gap before (T0547)V82 # TweakPsiPhi removed gap before (T0547)W194 # TweakPhi removed gap before (T0547)E220 # TweakPsiPhi removed gap before (T0547)K493 # TweakPsiSubtree removed gap before (T0547)K582 # TweakPhi removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)F227 # TweakPsiSubtree removed gap before (T0547)L155 # TweakPsiPhi removed gap before (T0547)S581 # TweakPsiPhi removed gap before (T0547)K607 # TweakPsiPhi removed gap before (T0547)H591 # TweakPsiSubtree removed gap before (T0547)V502 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)D428 # TweakPsiSubtree removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)S475 # generation 191: best score out of 40: T0547.try1-opt2 203.65735 cost/residue, 768 clashes 0.12981 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 284 178 / 918 = 0.19390 0.00337 ## JiggleSubtree 2 46 29 / 429 = 0.06760 0.00514 ## JiggleSegment 5 57 38 / 539 = 0.07050 0.00428 ## OptSubtree 0 0 0 / 114 = 0.00000 0.00000 ## OptSegment 0 1 1 / 252 = 0.00397 0.00139 ## OptAllSegments 0 0 0 / 111 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 117 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 101 = 0.00000 0.00000 ## TweakPhiSubtree 62 554 322 / 1429 = 0.22533 0.00519 ## TweakPhiSegment 51 620 377 / 1352 = 0.27885 0.00542 ## TweakPsiSubtree 1 454 304 / 1391 = 0.21855 0.00526 ## TweakPsiSegment 3 682 452 / 1811 = 0.24959 0.00660 ## TweakPsiPhiSubtree 141 475 286 / 1085 = 0.26359 0.00425 ## TweakPsiPhiSegment 132 420 238 / 984 = 0.24187 0.00365 ## TweakHbondSubtree 22 308 196 / 1082 = 0.18115 0.00400 ## TweakHbondSegment 15 365 207 / 1106 = 0.18716 0.00420 ## TweakMultimer 311 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 47 205 129 / 459 = 0.28105 0.00124 ## FixOmega 3 0 0 / 105 = 0.00000 0.00000 ## Backrub 200 288 135 / 663 = 0.20362 0.00215 ## BigBackrub 146 110 61 / 545 = 0.11193 0.00226 ## OneRotamer 0 337 165 / 1620 = 0.10185 0.00480 ## ClashingRotamer 1 3 1 / 190 = 0.00526 0.00069 ## ClusteredRotamer 21 5 3 / 165 = 0.01818 0.00071 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 235 = 0.00426 0.00011 ## CloseGap 0 19 6 / 273 = 0.02198 0.00598 ## HealGap 0 15 9 / 326 = 0.02761 0.00077 ## MoveGap 0 0 0 / 112 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 239 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 117 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 224 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 112 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 533 = 0.00000 0.00000 ## CrossOver 0 0 0 / 110 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 21 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 109 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 121 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)H242 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L560 # TweakPsiSubtree removed gap before (T0547)D566 # TweakPhi removed gap before (T0547)E285 # TweakPsiSubtree removed gap before (T0547)L211 # TweakPsiSubtree removed gap before (T0547)D428 # TweakPsiPhi removed gap before (T0547)I157 # TweakPsiSubtree removed gap before (T0547)M463 # TweakPsiSubtree removed gap before (T0547)E338 # TweakPhi removed gap before (T0547)V516 # TweakPsiPhi removed gap before (T0547)S387 # TweakPsiPhi removed gap before (T0547)L389 # TweakPhi removed gap before (T0547)F447 # TweakPsiPhi removed gap before (T0547)L499 # TweakPhi removed gap before (T0547)L234 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPhi removed gap before (T0547)K219 # TweakPsiSubtree removed gap before (T0547)N132 # TweakPsiPhi removed gap before (T0547)E12 # TweakPsiSubtree removed gap before (T0547)E505 # TweakPsiPhi removed gap before (T0547)E26 # TweakPsiSubtree removed gap before (T0547)D33 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPhi removed gap before (T0547)A416 # TweakPhi removed gap before (T0547)L583 # TweakPsiPhi removed gap before (T0547)V336 # TweakPsiSubtree removed gap before (T0547)K27 # TweakPsiPhi removed gap before (T0547)A121 # TweakPsiSubtree removed gap before (T0547)G421 # TweakPsiSubtree removed gap before (T0547)L100 # TweakPhi removed gap before (T0547)L394 # TweakPsiPhi removed gap before (T0547)L258 # TweakPhi removed gap before (T0547)L389 # TweakPsiPhi removed gap before (T0547)A146 # TweakPhi removed gap before (T0547)K414 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G64 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F204 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)S475 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPsiSubtree removed gap before (T0547)S579 # TweakPsiPhi removed gap before (T0547)Q56 # TweakPsiPhi removed gap before (T0547)I333 # TweakPsiSubtree removed gap before (T0547)K423 # TweakPsiSubtree removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)L206 # TweakPsiPhi removed gap before (T0547)F530 # generation 192: best score out of 40: T0547.try1-opt2 203.65735 cost/residue, 768 clashes 0.12981 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 286 180 / 927 = 0.19417 0.00339 ## JiggleSubtree 2 46 29 / 430 = 0.06744 0.00512 ## JiggleSegment 5 57 38 / 540 = 0.07037 0.00427 ## OptSubtree 0 0 0 / 115 = 0.00000 0.00000 ## OptSegment 0 1 1 / 252 = 0.00397 0.00139 ## OptAllSegments 0 0 0 / 111 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 117 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 101 = 0.00000 0.00000 ## TweakPhiSubtree 62 557 324 / 1438 = 0.22531 0.00517 ## TweakPhiSegment 52 620 377 / 1354 = 0.27843 0.00541 ## TweakPsiSubtree 1 457 305 / 1401 = 0.21770 0.00524 ## TweakPsiSegment 3 688 456 / 1827 = 0.24959 0.00657 ## TweakPsiPhiSubtree 145 477 287 / 1090 = 0.26330 0.00423 ## TweakPsiPhiSegment 133 424 239 / 993 = 0.24068 0.00363 ## TweakHbondSubtree 22 309 197 / 1088 = 0.18107 0.00398 ## TweakHbondSegment 15 365 207 / 1108 = 0.18682 0.00419 ## TweakMultimer 315 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 47 206 130 / 462 = 0.28139 0.00124 ## FixOmega 3 0 0 / 106 = 0.00000 0.00000 ## Backrub 203 288 135 / 666 = 0.20270 0.00214 ## BigBackrub 146 111 62 / 547 = 0.11335 0.00231 ## OneRotamer 0 340 167 / 1635 = 0.10214 0.00478 ## ClashingRotamer 1 3 1 / 190 = 0.00526 0.00069 ## ClusteredRotamer 21 5 3 / 165 = 0.01818 0.00071 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 235 = 0.00426 0.00011 ## CloseGap 0 19 6 / 273 = 0.02198 0.00598 ## HealGap 0 15 9 / 326 = 0.02761 0.00077 ## MoveGap 0 0 0 / 112 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 239 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 117 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 224 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 113 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 534 = 0.00000 0.00000 ## CrossOver 0 0 0 / 111 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 22 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 109 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 122 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)D434 # TweakPsiPhi removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)E294 # TweakPsiPhi removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)R474 # TweakPsiSubtree removed gap before (T0547)P84 # TweakPsiPhi removed gap before (T0547)A553 # TweakPhi removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)D480 # TweakPsiPhi removed gap before (T0547)H532 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)S341 # TweakPsiSubtree removed gap before (T0547)P29 # TweakPsiSubtree removed gap before (T0547)L529 # TweakPsiPhi removed gap before (T0547)N11 # TweakPsiSubtree removed gap before (T0547)R183 # TweakPsiSubtree removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)D364 # TweakPsiPhi removed gap before (T0547)K95 # TweakPsiPhi removed gap before (T0547)L54 # TweakPsiPhi removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)G19 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)Y122 # TweakPsiSubtree removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)K414 # TweakPsiPhi removed gap before (T0547)G190 # TweakPsiSubtree removed gap before (T0547)S492 # TweakPsiSubtree removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)V131 # TweakPhi removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPhi removed gap before (T0547)L515 # TweakPsiPhi removed gap before (T0547)V82 # TweakPsiPhi removed gap before (T0547)L430 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K177 # TweakPsiPhi removed gap before (T0547)Q458 # TweakPsiPhi removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)A553 # TweakPsiSubtree removed gap before (T0547)A553 # TweakPsiSubtree removed gap before (T0547)L351 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N585 # TweakPsiSubtree removed gap before (T0547)S188 # TweakPsiSubtree removed gap before (T0547)G181 # TweakPsiSubtree removed gap before (T0547)P533 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)N18 # generation 193: best score out of 40: T0547.try1-opt2 203.58861 cost/residue, 768 clashes 0.12993 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 290 183 / 937 = 0.19530 0.00338 ## JiggleSubtree 2 46 29 / 430 = 0.06744 0.00512 ## JiggleSegment 5 57 38 / 540 = 0.07037 0.00427 ## OptSubtree 0 0 0 / 115 = 0.00000 0.00000 ## OptSegment 0 1 1 / 253 = 0.00395 0.00138 ## OptAllSegments 0 0 0 / 111 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 117 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 102 = 0.00000 0.00000 ## TweakPhiSubtree 63 561 326 / 1444 = 0.22576 0.00516 ## TweakPhiSegment 52 620 377 / 1354 = 0.27843 0.00541 ## TweakPsiSubtree 1 460 309 / 1416 = 0.21822 0.00520 ## TweakPsiSegment 3 692 459 / 1841 = 0.24932 0.00655 ## TweakPsiPhiSubtree 145 478 288 / 1095 = 0.26301 0.00422 ## TweakPsiPhiSegment 135 430 244 / 1005 = 0.24279 0.00367 ## TweakHbondSubtree 22 310 198 / 1092 = 0.18132 0.00397 ## TweakHbondSegment 15 365 207 / 1110 = 0.18649 0.00419 ## TweakMultimer 318 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 47 207 131 / 464 = 0.28233 0.00123 ## FixOmega 3 0 0 / 107 = 0.00000 0.00000 ## Backrub 209 290 136 / 671 = 0.20268 0.00215 ## BigBackrub 147 112 63 / 549 = 0.11475 0.00232 ## OneRotamer 0 344 170 / 1650 = 0.10303 0.00476 ## ClashingRotamer 1 3 1 / 192 = 0.00521 0.00068 ## ClusteredRotamer 21 5 3 / 166 = 0.01807 0.00071 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 235 = 0.00426 0.00011 ## CloseGap 0 19 6 / 273 = 0.02198 0.00598 ## HealGap 0 15 9 / 327 = 0.02752 0.00077 ## MoveGap 0 0 0 / 113 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 239 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 117 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 224 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 113 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 534 = 0.00000 0.00000 ## CrossOver 0 0 0 / 111 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 22 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 109 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 122 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)F324 # TweakPsiSubtree removed gap before (T0547)K135 # TweakPhi removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)E257 # TweakPsiSubtree removed gap before (T0547)E595 # TweakPhi removed gap before (T0547)S539 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N580 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)Q448 # TweakPsiPhi removed gap before (T0547)K582 # TweakPhi removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)S368 # TweakPsiSubtree removed gap before (T0547)D469 # TweakPsiPhi removed gap before (T0547)S372 # TweakPhi removed gap before (T0547)D40 # TweakPhi removed gap before (T0547)L606 # TweakPsiPhi removed gap before (T0547)L47 # TweakPsiPhi removed gap before (T0547)Q424 # TweakPhi removed gap before (T0547)A326 # TweakPsiSubtree removed gap before (T0547)K175 # TweakPsiSubtree removed gap before (T0547)D452 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)N67 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)R474 # TweakPsiPhi removed gap before (T0547)H532 # TweakPsiPhi removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)T473 # TweakPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)A268 # TweakPsiPhi removed gap before (T0547)A195 # TweakPsiPhi removed gap before (T0547)I153 # TweakPsiSubtree removed gap before (T0547)V277 # TweakPsiSubtree removed gap before (T0547)F232 # TweakPsiSubtree removed gap before (T0547)T531 # TweakPsiPhi removed gap before (T0547)K27 # TweakPhi removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)I306 # TweakPhi removed gap before (T0547)L271 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPhi removed gap before (T0547)L394 # TweakPhi removed gap before (T0547)A110 # TweakPsiPhi removed gap before (T0547)A296 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPsiPhi removed gap before (T0547)N216 # TweakPhi removed gap before (T0547)I59 # TweakPsiPhi removed gap before (T0547)F453 # TweakPsiPhi removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)F134 # TweakPsiPhi removed gap before (T0547)L385 # TweakPsiPhi removed gap before (T0547)M463 # TweakPsiPhi removed gap before (T0547)E552 # TweakPsiSubtree removed gap before (T0547)F227 # TweakPsiPhi removed gap before (T0547)S608 # TweakPsiPhi removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)S539 # generation 194: best score out of 40: T0547.try1-opt2 203.54292 cost/residue, 768 clashes 0.12979 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 290 184 / 941 = 0.19554 0.00338 ## JiggleSubtree 2 46 29 / 430 = 0.06744 0.00512 ## JiggleSegment 5 57 38 / 540 = 0.07037 0.00427 ## OptSubtree 0 0 0 / 115 = 0.00000 0.00000 ## OptSegment 0 1 1 / 253 = 0.00395 0.00138 ## OptAllSegments 0 0 0 / 111 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 118 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 102 = 0.00000 0.00000 ## TweakPhiSubtree 63 565 330 / 1455 = 0.22680 0.00519 ## TweakPhiSegment 52 623 378 / 1362 = 0.27753 0.00538 ## TweakPsiSubtree 1 462 310 / 1426 = 0.21739 0.00520 ## TweakPsiSegment 3 693 460 / 1847 = 0.24905 0.00653 ## TweakPsiPhiSubtree 147 481 289 / 1103 = 0.26201 0.00419 ## TweakPsiPhiSegment 136 435 246 / 1020 = 0.24118 0.00365 ## TweakHbondSubtree 22 313 199 / 1099 = 0.18107 0.00395 ## TweakHbondSegment 15 367 208 / 1114 = 0.18671 0.00417 ## TweakMultimer 321 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 47 210 133 / 467 = 0.28480 0.00125 ## FixOmega 3 0 0 / 107 = 0.00000 0.00000 ## Backrub 209 290 136 / 674 = 0.20178 0.00214 ## BigBackrub 151 112 63 / 552 = 0.11413 0.00231 ## OneRotamer 0 345 171 / 1659 = 0.10307 0.00475 ## ClashingRotamer 1 3 1 / 192 = 0.00521 0.00068 ## ClusteredRotamer 21 5 3 / 167 = 0.01796 0.00071 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 237 = 0.00422 0.00011 ## CloseGap 0 19 6 / 273 = 0.02198 0.00598 ## HealGap 0 15 9 / 328 = 0.02744 0.00077 ## MoveGap 0 0 0 / 113 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 239 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 117 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 224 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 113 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 538 = 0.00000 0.00000 ## CrossOver 0 0 0 / 111 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 22 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 109 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 122 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)F134 # TweakPsiPhi removed gap before (T0547)M450 # TweakPhi removed gap before (T0547)V87 # TweakPhi removed gap before (T0547)I478 # TweakPsiSubtree removed gap before (T0547)N65 # TweakPhi removed gap before (T0547)A307 # TweakPsiPhi removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)N80 # TweakPsiSubtree removed gap before (T0547)L160 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I157 # TweakPsiPhi removed gap before (T0547)K267 # TweakPsiSubtree removed gap before (T0547)D360 # TweakPsiPhi removed gap before (T0547)N152 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPsiSubtree removed gap before (T0547)L332 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)S403 # TweakPsiPhi removed gap before (T0547)S287 # TweakPsiSubtree removed gap before (T0547)P178 # TweakPsiPhi removed gap before (T0547)V584 # TweakPsiSubtree removed gap before (T0547)I369 # TweakPsiSubtree removed gap before (T0547)F513 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)S381 # TweakPsiSubtree removed gap before (T0547)I388 # TweakPsiPhi removed gap before (T0547)K36 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)H532 # TweakPhi removed gap before (T0547)K76 # TweakPsiPhi removed gap before (T0547)N132 # TweakPsiSubtree removed gap before (T0547)E561 # TweakPsiPhi removed gap before (T0547)S341 # TweakPsiSubtree removed gap before (T0547)I540 # TweakPsiSubtree removed gap before (T0547)Y83 # TweakPsiSubtree removed gap before (T0547)N216 # TweakPhi removed gap before (T0547)G421 # TweakPhi removed gap before (T0547)G252 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A195 # TweakPhi removed gap before (T0547)S608 # TweakPsiPhi removed gap before (T0547)L118 # TweakPhi removed gap before (T0547)D312 # TweakPsiSubtree removed gap before (T0547)L271 # TweakPsiSubtree removed gap before (T0547)V215 # generation 195: best score out of 40: T0547.try1-opt2 203.41835 cost/residue, 763 clashes 0.12979 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 292 186 / 953 = 0.19517 0.00333 ## JiggleSubtree 2 46 29 / 430 = 0.06744 0.00512 ## JiggleSegment 5 57 38 / 540 = 0.07037 0.00427 ## OptSubtree 0 0 0 / 116 = 0.00000 0.00000 ## OptSegment 0 1 1 / 253 = 0.00395 0.00138 ## OptAllSegments 0 0 0 / 111 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 119 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 102 = 0.00000 0.00000 ## TweakPhiSubtree 64 567 334 / 1466 = 0.22783 0.00517 ## TweakPhiSegment 52 624 378 / 1365 = 0.27692 0.00537 ## TweakPsiSubtree 1 465 311 / 1432 = 0.21718 0.00521 ## TweakPsiSegment 3 697 461 / 1857 = 0.24825 0.00650 ## TweakPsiPhiSubtree 148 483 291 / 1110 = 0.26216 0.00418 ## TweakPsiPhiSegment 136 439 248 / 1027 = 0.24148 0.00365 ## TweakHbondSubtree 22 314 199 / 1103 = 0.18042 0.00394 ## TweakHbondSegment 15 369 208 / 1122 = 0.18538 0.00414 ## TweakMultimer 323 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 48 211 134 / 469 = 0.28571 0.00125 ## FixOmega 3 0 0 / 107 = 0.00000 0.00000 ## Backrub 210 293 138 / 678 = 0.20354 0.00214 ## BigBackrub 155 113 63 / 556 = 0.11331 0.00229 ## OneRotamer 0 349 173 / 1673 = 0.10341 0.00479 ## ClashingRotamer 1 3 1 / 193 = 0.00518 0.00068 ## ClusteredRotamer 21 5 3 / 168 = 0.01786 0.00070 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 237 = 0.00422 0.00011 ## CloseGap 0 19 6 / 275 = 0.02182 0.00594 ## HealGap 0 15 9 / 328 = 0.02744 0.00077 ## MoveGap 0 0 0 / 113 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 239 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 117 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 224 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 113 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 539 = 0.00000 0.00000 ## CrossOver 0 0 0 / 112 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 22 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 109 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 122 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)G64 # TweakPsiSubtree removed gap before (T0547)S208 # TweakPsiPhi removed gap before (T0547)K352 # TweakPsiPhi removed gap before (T0547)Q56 # TweakPsiPhi removed gap before (T0547)E308 # TweakPhi removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)K95 # TweakPsiPhi removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)G395 # TweakPsiPhi removed gap before (T0547)F204 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L511 # TweakPsiSubtree removed gap before (T0547)I489 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)K286 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)D136 # TweakPhi removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)G64 # TweakPhi removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)H187 # TweakPsiPhi removed gap before (T0547)F144 # TweakPsiSubtree removed gap before (T0547)I350 # TweakPsiPhi removed gap before (T0547)A170 # TweakPsiSubtree removed gap before (T0547)G150 # TweakPsiPhi removed gap before (T0547)G421 # TweakPhi removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)P356 # TweakPsiPhi removed gap before (T0547)I8 # TweakPsiPhi removed gap before (T0547)Q342 # TweakPsiSubtree removed gap before (T0547)E435 # TweakPhi removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)F447 # TweakPsiSubtree removed gap before (T0547)P472 # TweakPsiSubtree removed gap before (T0547)S445 # TweakPhi removed gap before (T0547)L266 # TweakPsiPhi removed gap before (T0547)F204 # TweakPsiSubtree removed gap before (T0547)I570 # TweakPhi removed gap before (T0547)H410 # TweakPsiPhi removed gap before (T0547)K582 # TweakPhi removed gap before (T0547)A69 # TweakPhi removed gap before (T0547)H53 # TweakPhi removed gap before (T0547)D422 # TweakPhi removed gap before (T0547)L244 # generation 196: best score out of 40: T0547.try1-opt2 203.39275 cost/residue, 761 clashes 0.12969 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 294 188 / 961 = 0.19563 0.00332 ## JiggleSubtree 2 46 29 / 430 = 0.06744 0.00512 ## JiggleSegment 5 57 38 / 540 = 0.07037 0.00427 ## OptSubtree 0 0 0 / 117 = 0.00000 0.00000 ## OptSegment 0 1 1 / 253 = 0.00395 0.00138 ## OptAllSegments 0 0 0 / 111 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 119 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 102 = 0.00000 0.00000 ## TweakPhiSubtree 64 569 334 / 1473 = 0.22675 0.00515 ## TweakPhiSegment 52 625 382 / 1372 = 0.27843 0.00536 ## TweakPsiSubtree 1 466 311 / 1438 = 0.21627 0.00519 ## TweakPsiSegment 3 701 465 / 1865 = 0.24933 0.00650 ## TweakPsiPhiSubtree 148 486 294 / 1118 = 0.26297 0.00417 ## TweakPsiPhiSegment 138 445 250 / 1034 = 0.24178 0.00366 ## TweakHbondSubtree 22 315 200 / 1108 = 0.18051 0.00393 ## TweakHbondSegment 15 369 208 / 1125 = 0.18489 0.00413 ## TweakMultimer 326 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 48 215 137 / 478 = 0.28661 0.00129 ## FixOmega 3 0 0 / 107 = 0.00000 0.00000 ## Backrub 212 296 138 / 687 = 0.20087 0.00211 ## BigBackrub 157 116 63 / 561 = 0.11230 0.00227 ## OneRotamer 0 352 174 / 1686 = 0.10320 0.00475 ## ClashingRotamer 1 3 1 / 193 = 0.00518 0.00068 ## ClusteredRotamer 21 5 3 / 168 = 0.01786 0.00070 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 238 = 0.00420 0.00011 ## CloseGap 0 19 6 / 275 = 0.02182 0.00594 ## HealGap 0 15 9 / 328 = 0.02744 0.00077 ## MoveGap 0 0 0 / 113 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 240 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 117 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 224 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 113 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 540 = 0.00000 0.00000 ## CrossOver 0 0 0 / 112 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 22 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 110 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 122 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)Y491 # TweakPsiPhi removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)A553 # TweakPsiPhi removed gap before (T0547)S197 # TweakPhi removed gap before (T0547)N132 # TweakPsiPhi removed gap before (T0547)I140 # TweakPsiPhi removed gap before (T0547)D586 # TweakPhi removed gap before (T0547)D103 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPhi removed gap before (T0547)L292 # TweakPhi removed gap before (T0547)L378 # TweakPsiPhi removed gap before (T0547)A536 # TweakPsiPhi removed gap before (T0547)D383 # TweakPsiPhi removed gap before (T0547)L339 # TweakPsiSubtree removed gap before (T0547)N18 # TweakPhi removed gap before (T0547)S368 # TweakPsiSubtree removed gap before (T0547)E213 # TweakPsiSubtree removed gap before (T0547)I412 # TweakPsiSubtree removed gap before (T0547)P243 # TweakPhi removed gap before (T0547)E250 # TweakPsiSubtree removed gap before (T0547)L223 # TweakPsiPhi removed gap before (T0547)K171 # TweakPsiPhi removed gap before (T0547)I23 # TweakPsiSubtree removed gap before (T0547)S287 # TweakPsiPhi removed gap before (T0547)E361 # TweakPsiPhi removed gap before (T0547)Y519 # TweakPsiPhi removed gap before (T0547)K423 # TweakPhi removed gap before (T0547)E406 # TweakPsiSubtree removed gap before (T0547)D558 # TweakPsiPhi removed gap before (T0547)G252 # TweakPsiSubtree removed gap before (T0547)K219 # TweakPsiSubtree removed gap before (T0547)R467 # TweakPhi removed gap before (T0547)S581 # TweakPsiPhi removed gap before (T0547)A170 # TweakPsiSubtree removed gap before (T0547)K260 # TweakPsiPhi removed gap before (T0547)H242 # TweakPhi removed gap before (T0547)L258 # TweakPsiSubtree removed gap before (T0547)L399 # TweakPhi removed gap before (T0547)K219 # TweakPsiSubtree removed gap before (T0547)G199 # TweakPsiSubtree removed gap before (T0547)E576 # TweakPhi removed gap before (T0547)Q448 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N11 # TweakPhi removed gap before (T0547)K353 # TweakPhi removed gap before (T0547)A214 # TweakPsiSubtree removed gap before (T0547)L391 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPsiPhi removed gap before (T0547)Y279 # TweakPhi removed gap before (T0547)M571 # generation 197: best score out of 40: T0547.try1-opt2 203.37567 cost/residue, 763 clashes 0.12984 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 296 189 / 966 = 0.19565 0.00333 ## JiggleSubtree 2 46 29 / 432 = 0.06713 0.00510 ## JiggleSegment 5 57 38 / 540 = 0.07037 0.00427 ## OptSubtree 0 0 0 / 117 = 0.00000 0.00000 ## OptSegment 0 1 1 / 253 = 0.00395 0.00138 ## OptAllSegments 0 0 0 / 111 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 120 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 103 = 0.00000 0.00000 ## TweakPhiSubtree 64 572 337 / 1483 = 0.22724 0.00513 ## TweakPhiSegment 52 627 383 / 1378 = 0.27794 0.00535 ## TweakPsiSubtree 1 467 312 / 1448 = 0.21547 0.00518 ## TweakPsiSegment 3 705 467 / 1873 = 0.24933 0.00648 ## TweakPsiPhiSubtree 148 490 297 / 1123 = 0.26447 0.00419 ## TweakPsiPhiSegment 139 448 252 / 1047 = 0.24069 0.00364 ## TweakHbondSubtree 22 317 200 / 1114 = 0.17953 0.00391 ## TweakHbondSegment 15 370 209 / 1128 = 0.18528 0.00413 ## TweakMultimer 333 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 49 216 138 / 483 = 0.28571 0.00128 ## FixOmega 3 0 0 / 107 = 0.00000 0.00000 ## Backrub 213 297 138 / 689 = 0.20029 0.00211 ## BigBackrub 157 117 64 / 564 = 0.11348 0.00234 ## OneRotamer 0 356 177 / 1700 = 0.10412 0.00480 ## ClashingRotamer 1 3 1 / 193 = 0.00518 0.00068 ## ClusteredRotamer 21 5 3 / 168 = 0.01786 0.00070 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 238 = 0.00420 0.00011 ## CloseGap 0 19 6 / 275 = 0.02182 0.00594 ## HealGap 0 15 9 / 330 = 0.02727 0.00076 ## MoveGap 0 0 0 / 113 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 240 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 119 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 225 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 113 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 541 = 0.00000 0.00000 ## CrossOver 0 0 0 / 112 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 22 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 110 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 122 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)K68 # TweakPhi removed gap before (T0547)D383 # TweakPsiSubtree removed gap before (T0547)K28 # TweakPhi removed gap before (T0547)R293 # TweakPsiPhi removed gap before (T0547)K95 # TweakPhi removed gap before (T0547)I333 # TweakPsiSubtree removed gap before (T0547)Y83 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G512 # TweakPsiPhi removed gap before (T0547)F530 # TweakPsiPhi removed gap before (T0547)K353 # TweakPsiSubtree removed gap before (T0547)V21 # TweakPsiPhi removed gap before (T0547)K423 # TweakPhi removed gap before (T0547)D501 # TweakPsiPhi removed gap before (T0547)L258 # TweakPsiPhi removed gap before (T0547)G487 # TweakPhi removed gap before (T0547)V87 # TweakPsiPhi removed gap before (T0547)N141 # TweakPsiPhi removed gap before (T0547)Q458 # TweakPhi removed gap before (T0547)K68 # TweakPsiSubtree removed gap before (T0547)I333 # TweakPsiPhi removed gap before (T0547)L248 # TweakPsiSubtree removed gap before (T0547)Q520 # TweakPsiSubtree removed gap before (T0547)L391 # TweakPsiSubtree removed gap before (T0547)K245 # TweakPsiSubtree removed gap before (T0547)E162 # TweakPsiSubtree removed gap before (T0547)S539 # TweakPsiPhi removed gap before (T0547)L365 # TweakPhi removed gap before (T0547)L332 # TweakPsiSubtree removed gap before (T0547)G395 # TweakPhi removed gap before (T0547)V547 # TweakPsiSubtree removed gap before (T0547)P472 # TweakPhi removed gap before (T0547)T256 # TweakPhi removed gap before (T0547)N216 # TweakPhi removed gap before (T0547)K415 # TweakPhi removed gap before (T0547)V442 # TweakPhi removed gap before (T0547)A276 # TweakPsiPhi removed gap before (T0547)V191 # TweakPsiSubtree removed gap before (T0547)L557 # TweakPsiPhi removed gap before (T0547)E125 # TweakPhi removed gap before (T0547)Y25 # TweakPsiPhi removed gap before (T0547)L266 # TweakPsiSubtree removed gap before (T0547)N61 # TweakPhi removed gap before (T0547)G610 # TweakPhi removed gap before (T0547)E457 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)H527 # TweakPhi removed gap before (T0547)L523 # TweakPsiSubtree removed gap before (T0547)F134 # generation 198: best score out of 40: T0547.try1-opt2 203.34673 cost/residue, 763 clashes 0.12941 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 296 189 / 973 = 0.19424 0.00330 ## JiggleSubtree 2 46 29 / 432 = 0.06713 0.00510 ## JiggleSegment 5 57 38 / 540 = 0.07037 0.00427 ## OptSubtree 0 0 0 / 117 = 0.00000 0.00000 ## OptSegment 0 1 1 / 254 = 0.00394 0.00138 ## OptAllSegments 0 0 0 / 111 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 120 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 103 = 0.00000 0.00000 ## TweakPhiSubtree 64 574 339 / 1494 = 0.22691 0.00511 ## TweakPhiSegment 52 630 386 / 1387 = 0.27830 0.00533 ## TweakPsiSubtree 1 469 313 / 1457 = 0.21482 0.00516 ## TweakPsiSegment 3 707 471 / 1881 = 0.25040 0.00647 ## TweakPsiPhiSubtree 149 492 299 / 1131 = 0.26437 0.00418 ## TweakPsiPhiSegment 139 454 256 / 1057 = 0.24219 0.00365 ## TweakHbondSubtree 22 318 201 / 1118 = 0.17979 0.00390 ## TweakHbondSegment 15 371 210 / 1132 = 0.18551 0.00420 ## TweakMultimer 338 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 51 218 140 / 488 = 0.28689 0.00130 ## FixOmega 3 0 0 / 108 = 0.00000 0.00000 ## Backrub 214 299 139 / 695 = 0.20000 0.00209 ## BigBackrub 159 119 65 / 567 = 0.11464 0.00236 ## OneRotamer 0 357 178 / 1709 = 0.10415 0.00478 ## ClashingRotamer 1 3 1 / 193 = 0.00518 0.00068 ## ClusteredRotamer 21 5 3 / 169 = 0.01775 0.00070 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 238 = 0.00420 0.00011 ## CloseGap 0 19 6 / 275 = 0.02182 0.00594 ## HealGap 0 15 9 / 331 = 0.02719 0.00076 ## MoveGap 0 0 0 / 113 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 240 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 120 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 225 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 113 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 541 = 0.00000 0.00000 ## CrossOver 0 0 0 / 113 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 23 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 110 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 122 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)F599 # TweakPsiPhi removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiSubtree removed gap before (T0547)L217 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)L515 # TweakPhi removed gap before (T0547)D602 # TweakPhi removed gap before (T0547)F460 # TweakPsiPhi removed gap before (T0547)V35 # TweakPhi removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)Q342 # TweakPsiSubtree removed gap before (T0547)D316 # TweakPhi removed gap before (T0547)L430 # TweakPhi removed gap before (T0547)D360 # TweakPsiPhi removed gap before (T0547)E507 # TweakPsiPhi removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)S608 # TweakPsiSubtree removed gap before (T0547)Y519 # TweakPsiSubtree removed gap before (T0547)N132 # TweakPsiSubtree removed gap before (T0547)T239 # TweakPsiSubtree removed gap before (T0547)K219 # TweakPsiPhi removed gap before (T0547)E125 # TweakPsiSubtree removed gap before (T0547)L598 # TweakPsiPhi removed gap before (T0547)A536 # TweakPsiSubtree removed gap before (T0547)T409 # TweakPsiPhi removed gap before (T0547)S368 # TweakPsiSubtree removed gap before (T0547)N270 # TweakPhi removed gap before (T0547)E346 # TweakPhi removed gap before (T0547)S581 # TweakPhi removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)F51 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)E552 # TweakPsiPhi removed gap before (T0547)T409 # TweakPsiPhi removed gap before (T0547)N443 # TweakPhi removed gap before (T0547)R474 # TweakPsiSubtree removed gap before (T0547)E308 # generation 199: best score out of 40: T0547.try1-opt2 203.28560 cost/residue, 759 clashes 0.12985 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 298 190 / 976 = 0.19467 0.00330 ## JiggleSubtree 2 47 30 / 433 = 0.06928 0.00524 ## JiggleSegment 5 57 38 / 540 = 0.07037 0.00427 ## OptSubtree 0 0 0 / 117 = 0.00000 0.00000 ## OptSegment 0 1 1 / 254 = 0.00394 0.00138 ## OptAllSegments 0 0 0 / 111 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 120 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 103 = 0.00000 0.00000 ## TweakPhiSubtree 65 577 341 / 1503 = 0.22688 0.00512 ## TweakPhiSegment 52 633 386 / 1393 = 0.27710 0.00531 ## TweakPsiSubtree 1 470 314 / 1465 = 0.21433 0.00514 ## TweakPsiSegment 3 707 471 / 1886 = 0.24973 0.00645 ## TweakPsiPhiSubtree 150 497 302 / 1138 = 0.26538 0.00420 ## TweakPsiPhiSegment 139 455 258 / 1061 = 0.24317 0.00366 ## TweakHbondSubtree 23 319 202 / 1119 = 0.18052 0.00391 ## TweakHbondSegment 15 373 211 / 1140 = 0.18509 0.00418 ## TweakMultimer 339 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 51 220 141 / 494 = 0.28543 0.00130 ## FixOmega 3 0 0 / 108 = 0.00000 0.00000 ## Backrub 216 300 139 / 701 = 0.19829 0.00207 ## BigBackrub 160 120 66 / 579 = 0.11399 0.00232 ## OneRotamer 0 360 178 / 1723 = 0.10331 0.00474 ## ClashingRotamer 1 3 1 / 194 = 0.00515 0.00067 ## ClusteredRotamer 21 5 3 / 169 = 0.01775 0.00070 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 238 = 0.00420 0.00011 ## CloseGap 0 19 6 / 275 = 0.02182 0.00594 ## HealGap 0 15 9 / 333 = 0.02703 0.00076 ## MoveGap 0 0 0 / 114 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 241 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 120 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 226 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 113 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 544 = 0.00000 0.00000 ## CrossOver 0 0 0 / 113 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 23 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 111 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 122 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)S197 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPhi removed gap before (T0547)E576 # TweakPhi removed gap before (T0547)E172 # TweakPsiSubtree removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)L419 # TweakPsiSubtree removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)D602 # TweakPsiPhi removed gap before (T0547)T531 # TweakPhi removed gap before (T0547)I412 # TweakPsiSubtree removed gap before (T0547)A170 # TweakPsiPhi removed gap before (T0547)G604 # TweakPhi removed gap before (T0547)Y25 # TweakPsiSubtree removed gap before (T0547)I417 # TweakPhi removed gap before (T0547)Y25 # TweakPsiPhi removed gap before (T0547)G77 # TweakPsiPhi removed gap before (T0547)A296 # TweakPhi removed gap before (T0547)G181 # TweakPhi removed gap before (T0547)L515 # TweakPsiPhi removed gap before (T0547)F392 # TweakPsiSubtree removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)A431 # TweakPsiSubtree removed gap before (T0547)C22 # TweakPsiPhi removed gap before (T0547)K135 # TweakPhi removed gap before (T0547)S287 # TweakPsiPhi removed gap before (T0547)I573 # TweakPsiPhi removed gap before (T0547)D469 # TweakPsiPhi removed gap before (T0547)H379 # TweakPsiPhi removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)D558 # TweakPsiPhi removed gap before (T0547)H151 # TweakPsiSubtree removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)L375 # TweakPsiSubtree removed gap before (T0547)L394 # TweakPsiPhi removed gap before (T0547)K415 # TweakPsiSubtree removed gap before (T0547)L391 # TweakPsiPhi removed gap before (T0547)K310 # TweakPsiSubtree removed gap before (T0547)E488 # TweakPsiPhi removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)L275 # TweakPhi removed gap before (T0547)R293 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPsiPhi removed gap before (T0547)R293 # generation 200: best score out of 40: T0547.try1-opt2 203.27919 cost/residue, 764 clashes 0.12967 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 299 191 / 980 = 0.19490 0.00335 ## JiggleSubtree 2 48 30 / 453 = 0.06623 0.00501 ## JiggleSegment 5 57 38 / 540 = 0.07037 0.00427 ## OptSubtree 0 0 0 / 118 = 0.00000 0.00000 ## OptSegment 0 1 1 / 255 = 0.00392 0.00137 ## OptAllSegments 0 0 0 / 112 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 120 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 103 = 0.00000 0.00000 ## TweakPhiSubtree 65 580 343 / 1511 = 0.22700 0.00511 ## TweakPhiSegment 52 635 386 / 1396 = 0.27650 0.00530 ## TweakPsiSubtree 1 470 314 / 1474 = 0.21303 0.00511 ## TweakPsiSegment 3 712 475 / 1896 = 0.25053 0.00644 ## TweakPsiPhiSubtree 150 501 304 / 1146 = 0.26527 0.00419 ## TweakPsiPhiSegment 140 457 258 / 1069 = 0.24135 0.00363 ## TweakHbondSubtree 23 320 202 / 1123 = 0.17988 0.00390 ## TweakHbondSegment 15 375 211 / 1146 = 0.18412 0.00416 ## TweakMultimer 344 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 51 221 142 / 495 = 0.28687 0.00130 ## FixOmega 3 0 0 / 108 = 0.00000 0.00000 ## Backrub 216 300 139 / 703 = 0.19772 0.00207 ## BigBackrub 160 120 66 / 580 = 0.11379 0.00231 ## OneRotamer 0 362 178 / 1731 = 0.10283 0.00472 ## ClashingRotamer 1 3 1 / 194 = 0.00515 0.00067 ## ClusteredRotamer 21 5 3 / 170 = 0.01765 0.00069 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 238 = 0.00420 0.00011 ## CloseGap 0 19 6 / 275 = 0.02182 0.00594 ## HealGap 0 15 9 / 333 = 0.02703 0.00076 ## MoveGap 0 0 0 / 115 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 242 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 120 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 226 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 113 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 545 = 0.00000 0.00000 ## CrossOver 0 0 0 / 113 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 23 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 111 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 123 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)E278 # TweakPsiSubtree removed gap before (T0547)I15 # TweakPsiSubtree removed gap before (T0547)K175 # TweakPsiSubtree removed gap before (T0547)D486 # TweakPsiSubtree removed gap before (T0547)L391 # TweakPhi removed gap before (T0547)K353 # TweakPsiSubtree removed gap before (T0547)N541 # TweakPhi removed gap before (T0547)V87 # TweakPsiSubtree removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)Q89 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPsiSubtree removed gap before (T0547)T209 # TweakPhi removed gap before (T0547)L385 # TweakPsiSubtree removed gap before (T0547)T482 # TweakPsiPhi removed gap before (T0547)L408 # TweakPsiPhi removed gap before (T0547)K587 # TweakPsiSubtree removed gap before (T0547)G19 # TweakPsiPhi removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)K102 # TweakPsiSubtree removed gap before (T0547)G126 # TweakPhi removed gap before (T0547)E386 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)G150 # TweakPsiPhi removed gap before (T0547)E552 # TweakPsiSubtree removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)E320 # TweakPsiSubtree removed gap before (T0547)T390 # TweakPhi removed gap before (T0547)L234 # TweakPhi removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)I319 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)H187 # TweakPsiPhi removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)N179 # TweakPsiPhi removed gap before (T0547)D393 # TweakPhi removed gap before (T0547)G74 # TweakPsiPhi removed gap before (T0547)I369 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPsiPhi removed gap before (T0547)T207 # generation 201: best score out of 40: T0547.try1-opt2 203.21210 cost/residue, 767 clashes 0.12934 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 304 193 / 988 = 0.19534 0.00333 ## JiggleSubtree 2 48 30 / 455 = 0.06593 0.00499 ## JiggleSegment 5 57 38 / 542 = 0.07011 0.00426 ## OptSubtree 0 0 0 / 118 = 0.00000 0.00000 ## OptSegment 0 1 1 / 255 = 0.00392 0.00137 ## OptAllSegments 0 0 0 / 112 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 120 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 103 = 0.00000 0.00000 ## TweakPhiSubtree 66 582 345 / 1516 = 0.22757 0.00509 ## TweakPhiSegment 52 637 387 / 1399 = 0.27663 0.00532 ## TweakPsiSubtree 1 472 315 / 1487 = 0.21184 0.00515 ## TweakPsiSegment 3 717 477 / 1907 = 0.25013 0.00641 ## TweakPsiPhiSubtree 151 501 305 / 1148 = 0.26568 0.00419 ## TweakPsiPhiSegment 141 461 259 / 1077 = 0.24048 0.00360 ## TweakHbondSubtree 23 321 202 / 1128 = 0.17908 0.00388 ## TweakHbondSegment 15 376 211 / 1153 = 0.18300 0.00413 ## TweakMultimer 345 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 52 224 145 / 501 = 0.28942 0.00135 ## FixOmega 3 0 0 / 108 = 0.00000 0.00000 ## Backrub 216 301 140 / 708 = 0.19774 0.00205 ## BigBackrub 161 121 67 / 584 = 0.11473 0.00230 ## OneRotamer 0 362 178 / 1747 = 0.10189 0.00468 ## ClashingRotamer 1 3 1 / 194 = 0.00515 0.00067 ## ClusteredRotamer 21 5 3 / 170 = 0.01765 0.00069 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 238 = 0.00420 0.00011 ## CloseGap 0 19 6 / 275 = 0.02182 0.00594 ## HealGap 0 15 9 / 334 = 0.02695 0.00075 ## MoveGap 0 0 0 / 115 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 243 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 120 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 226 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 113 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 546 = 0.00000 0.00000 ## CrossOver 0 0 0 / 113 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 23 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 111 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 123 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)E12 # TweakPsiSubtree removed gap before (T0547)K28 # TweakPhi removed gap before (T0547)Q226 # TweakPsiSubtree removed gap before (T0547)I573 # TweakPsiSubtree removed gap before (T0547)N65 # TweakPhi removed gap before (T0547)D501 # TweakPsiSubtree removed gap before (T0547)K589 # TweakPhi removed gap before (T0547)D558 # TweakPsiPhi removed gap before (T0547)L497 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)K310 # TweakPhi removed gap before (T0547)K414 # TweakPsiPhi removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)T534 # TweakPsiSubtree removed gap before (T0547)Y75 # TweakPsiSubtree removed gap before (T0547)N355 # TweakPsiPhi removed gap before (T0547)F453 # TweakPsiSubtree removed gap before (T0547)E576 # TweakPsiSubtree removed gap before (T0547)L217 # TweakPhi removed gap before (T0547)F73 # TweakPhi removed gap before (T0547)K68 # TweakPsiPhi removed gap before (T0547)N152 # TweakPhi removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)A327 # TweakPsiSubtree removed gap before (T0547)A518 # TweakPsiPhi removed gap before (T0547)D503 # TweakPsiPhi removed gap before (T0547)E164 # TweakPhi removed gap before (T0547)L85 # TweakPhi removed gap before (T0547)V584 # TweakPsiSubtree removed gap before (T0547)E535 # TweakPsiPhi removed gap before (T0547)V87 # TweakPsiSubtree removed gap before (T0547)H500 # TweakPsiSubtree removed gap before (T0547)F324 # TweakPsiSubtree removed gap before (T0547)P451 # TweakPsiSubtree removed gap before (T0547)A165 # TweakPsiPhi removed gap before (T0547)S197 # TweakPhi removed gap before (T0547)E376 # TweakPhi removed gap before (T0547)V336 # TweakPhi removed gap before (T0547)L47 # TweakPsiPhi removed gap before (T0547)D562 # generation 202: best score out of 40: T0547.try1-opt2 203.14920 cost/residue, 762 clashes 0.12942 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 305 194 / 998 = 0.19439 0.00339 ## JiggleSubtree 2 48 30 / 459 = 0.06536 0.00495 ## JiggleSegment 5 57 38 / 542 = 0.07011 0.00426 ## OptSubtree 0 0 0 / 118 = 0.00000 0.00000 ## OptSegment 0 1 1 / 255 = 0.00392 0.00137 ## OptAllSegments 0 0 0 / 113 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 120 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 103 = 0.00000 0.00000 ## TweakPhiSubtree 66 585 348 / 1524 = 0.22835 0.00508 ## TweakPhiSegment 52 639 389 / 1405 = 0.27687 0.00532 ## TweakPsiSubtree 1 474 315 / 1499 = 0.21014 0.00511 ## TweakPsiSegment 3 719 479 / 1913 = 0.25039 0.00647 ## TweakPsiPhiSubtree 153 506 305 / 1156 = 0.26384 0.00416 ## TweakPsiPhiSegment 142 462 261 / 1080 = 0.24167 0.00361 ## TweakHbondSubtree 24 322 203 / 1132 = 0.17933 0.00396 ## TweakHbondSegment 16 377 211 / 1158 = 0.18221 0.00411 ## TweakMultimer 350 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 52 228 149 / 512 = 0.29102 0.00137 ## FixOmega 3 0 0 / 108 = 0.00000 0.00000 ## Backrub 216 302 140 / 711 = 0.19691 0.00204 ## BigBackrub 162 122 67 / 588 = 0.11395 0.00228 ## OneRotamer 0 366 179 / 1757 = 0.10188 0.00468 ## ClashingRotamer 1 3 1 / 194 = 0.00515 0.00067 ## ClusteredRotamer 21 5 3 / 170 = 0.01765 0.00069 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 241 = 0.00415 0.00011 ## CloseGap 0 19 6 / 276 = 0.02174 0.00591 ## HealGap 0 15 9 / 334 = 0.02695 0.00075 ## MoveGap 0 0 0 / 115 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 243 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 120 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 227 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 113 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 546 = 0.00000 0.00000 ## CrossOver 0 0 0 / 113 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 23 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 111 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 123 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)Y290 # TweakPhi removed gap before (T0547)K203 # TweakPsiPhi removed gap before (T0547)E37 # TweakPsiSubtree removed gap before (T0547)W479 # TweakPhi removed gap before (T0547)Q89 # TweakPsiPhi removed gap before (T0547)S372 # TweakPsiSubtree removed gap before (T0547)T239 # TweakPsiPhi removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)K352 # TweakPsiPhi removed gap before (T0547)L560 # TweakPsiSubtree removed gap before (T0547)L600 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)V331 # TweakPsiSubtree removed gap before (T0547)I388 # TweakPsiSubtree removed gap before (T0547)N575 # TweakPsiSubtree removed gap before (T0547)S403 # TweakPsiPhi removed gap before (T0547)F144 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G252 # TweakPsiSubtree removed gap before (T0547)S372 # TweakPsiPhi removed gap before (T0547)G274 # TweakPsiPhi removed gap before (T0547)Q520 # TweakPsiPhi removed gap before (T0547)K304 # TweakPsiSubtree removed gap before (T0547)L399 # TweakPsiSubtree removed gap before (T0547)L391 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiPhi removed gap before (T0547)L499 # TweakPsiSubtree removed gap before (T0547)T409 # TweakPhi removed gap before (T0547)G92 # TweakPsiSubtree removed gap before (T0547)I23 # TweakPsiPhi removed gap before (T0547)E505 # TweakPsiSubtree removed gap before (T0547)V299 # TweakPsiPhi removed gap before (T0547)I153 # TweakPhi removed gap before (T0547)L271 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)F498 # TweakPsiSubtree removed gap before (T0547)G594 # TweakPhi removed gap before (T0547)N123 # TweakPhi removed gap before (T0547)K28 # generation 203: best score out of 40: T0547.try1-opt2 203.12700 cost/residue, 765 clashes 0.12992 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 307 195 / 1008 = 0.19345 0.00345 ## JiggleSubtree 2 48 30 / 462 = 0.06494 0.00491 ## JiggleSegment 5 57 38 / 542 = 0.07011 0.00426 ## OptSubtree 0 0 0 / 118 = 0.00000 0.00000 ## OptSegment 0 1 1 / 256 = 0.00391 0.00137 ## OptAllSegments 0 0 0 / 113 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 120 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 103 = 0.00000 0.00000 ## TweakPhiSubtree 66 588 349 / 1529 = 0.22825 0.00506 ## TweakPhiSegment 52 640 390 / 1408 = 0.27699 0.00531 ## TweakPsiSubtree 1 476 316 / 1507 = 0.20969 0.00508 ## TweakPsiSegment 3 720 480 / 1921 = 0.24987 0.00645 ## TweakPsiPhiSubtree 154 510 306 / 1163 = 0.26311 0.00415 ## TweakPsiPhiSegment 142 467 265 / 1089 = 0.24334 0.00363 ## TweakHbondSubtree 24 325 204 / 1143 = 0.17848 0.00393 ## TweakHbondSegment 16 380 212 / 1166 = 0.18182 0.00409 ## TweakMultimer 354 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 53 230 152 / 516 = 0.29457 0.00139 ## FixOmega 3 0 0 / 108 = 0.00000 0.00000 ## Backrub 217 302 140 / 713 = 0.19635 0.00204 ## BigBackrub 165 122 67 / 590 = 0.11356 0.00228 ## OneRotamer 0 370 180 / 1770 = 0.10169 0.00469 ## ClashingRotamer 2 3 1 / 195 = 0.00513 0.00067 ## ClusteredRotamer 21 5 3 / 170 = 0.01765 0.00069 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 242 = 0.00413 0.00011 ## CloseGap 0 19 6 / 276 = 0.02174 0.00591 ## HealGap 0 15 9 / 335 = 0.02687 0.00075 ## MoveGap 0 0 0 / 115 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 243 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 120 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 227 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 114 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 547 = 0.00000 0.00000 ## CrossOver 0 0 0 / 113 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 23 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 112 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 123 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)N124 # TweakPsiPhi removed gap before (T0547)S581 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)I350 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G45 # TweakPsiSubtree removed gap before (T0547)V82 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPhi removed gap before (T0547)Q588 # TweakPhi removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)L108 # TweakPhi removed gap before (T0547)F301 # TweakPsiSubtree removed gap before (T0547)E488 # TweakPsiPhi removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)L560 # TweakPsiPhi removed gap before (T0547)A165 # TweakPsiSubtree removed gap before (T0547)I319 # TweakPsiPhi removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)L85 # TweakPhi removed gap before (T0547)E172 # TweakPhi removed gap before (T0547)G524 # TweakPsiSubtree removed gap before (T0547)F444 # TweakPhi removed gap before (T0547)A251 # TweakPsiPhi removed gap before (T0547)Y396 # TweakPhi removed gap before (T0547)R173 # TweakPhi removed gap before (T0547)Y104 # TweakPsiSubtree removed gap before (T0547)H527 # TweakPsiSubtree removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPhi removed gap before (T0547)F514 # TweakPsiSubtree removed gap before (T0547)D452 # TweakPsiSubtree removed gap before (T0547)H384 # TweakPhi removed gap before (T0547)E148 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)W479 # TweakPsiSubtree removed gap before (T0547)I369 # generation 204: best score out of 40: T0547.try1-opt2 203.07701 cost/residue, 752 clashes 0.12960 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 312 197 / 1021 = 0.19295 0.00342 ## JiggleSubtree 2 48 30 / 467 = 0.06424 0.00486 ## JiggleSegment 5 57 38 / 542 = 0.07011 0.00426 ## OptSubtree 0 0 0 / 118 = 0.00000 0.00000 ## OptSegment 0 1 1 / 256 = 0.00391 0.00137 ## OptAllSegments 0 0 0 / 113 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 120 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 103 = 0.00000 0.00000 ## TweakPhiSubtree 66 589 351 / 1539 = 0.22807 0.00506 ## TweakPhiSegment 52 643 391 / 1415 = 0.27633 0.00528 ## TweakPsiSubtree 1 477 317 / 1512 = 0.20966 0.00508 ## TweakPsiSegment 3 722 482 / 1932 = 0.24948 0.00643 ## TweakPsiPhiSubtree 156 511 307 / 1165 = 0.26352 0.00414 ## TweakPsiPhiSegment 143 468 266 / 1093 = 0.24337 0.00362 ## TweakHbondSubtree 24 326 205 / 1152 = 0.17795 0.00390 ## TweakHbondSegment 16 381 213 / 1170 = 0.18205 0.00408 ## TweakMultimer 355 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 54 238 154 / 528 = 0.29167 0.00137 ## FixOmega 3 0 0 / 109 = 0.00000 0.00000 ## Backrub 218 302 140 / 714 = 0.19608 0.00203 ## BigBackrub 166 122 67 / 592 = 0.11318 0.00227 ## OneRotamer 0 373 181 / 1777 = 0.10186 0.00473 ## ClashingRotamer 2 3 1 / 195 = 0.00513 0.00067 ## ClusteredRotamer 21 5 3 / 170 = 0.01765 0.00069 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 242 = 0.00413 0.00011 ## CloseGap 0 19 6 / 276 = 0.02174 0.00591 ## HealGap 0 15 9 / 339 = 0.02655 0.00074 ## MoveGap 0 0 0 / 115 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 244 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 120 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 227 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 114 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 549 = 0.00000 0.00000 ## CrossOver 0 0 0 / 113 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 23 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 112 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 123 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)T473 # TweakPhi removed gap before (T0547)S485 # TweakPsiPhi removed gap before (T0547)N61 # TweakPhi removed gap before (T0547)L430 # TweakPhi removed gap before (T0547)R259 # TweakPsiSubtree removed gap before (T0547)K267 # TweakPhi removed gap before (T0547)I388 # TweakPsiSubtree removed gap before (T0547)N328 # TweakPsiPhi removed gap before (T0547)N404 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPsiPhi removed gap before (T0547)S475 # TweakPhi removed gap before (T0547)E172 # TweakPsiPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)E346 # TweakPhi removed gap before (T0547)L583 # TweakPhi removed gap before (T0547)L598 # TweakPsiPhi removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)P176 # TweakPsiPhi removed gap before (T0547)I145 # TweakPhi removed gap before (T0547)E115 # TweakPsiSubtree removed gap before (T0547)F514 # TweakPhi removed gap before (T0547)A121 # TweakPsiPhi removed gap before (T0547)V82 # TweakPsiSubtree removed gap before (T0547)D503 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPhi removed gap before (T0547)L182 # TweakPsiSubtree removed gap before (T0547)S202 # TweakPsiSubtree removed gap before (T0547)F93 # TweakPhi removed gap before (T0547)D572 # TweakPsiSubtree removed gap before (T0547)K283 # TweakPhi removed gap before (T0547)D316 # TweakPsiSubtree removed gap before (T0547)E148 # TweakPhi removed gap before (T0547)E505 # TweakPhi removed gap before (T0547)Q281 # Can't patch backbone between (T0547)E505 and (T0547)K506 because distance= 3.706 not near ideal 3.804 # TweakPsiSubtree removed gap before (T0547)K353 # TweakPsiSubtree removed gap before (T0547)D564 # TweakPsiPhi removed gap before (T0547)K99 # TweakPsiPhi removed gap before (T0547)I212 # TweakPsiPhi removed gap before (T0547)Y396 # TweakPsiSubtree removed gap before (T0547)M229 # TweakPhi removed gap before (T0547)K311 # TweakPsiPhi removed gap before (T0547)L394 # TweakPsiPhi removed gap before (T0547)Y605 # TweakPsiPhi removed gap before (T0547)F318 # generation 205: best score out of 40: T0547.try1-opt2 203.04620 cost/residue, 752 clashes 0.12960 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 317 201 / 1029 = 0.19534 0.00344 ## JiggleSubtree 2 48 30 / 469 = 0.06397 0.00484 ## JiggleSegment 5 57 38 / 545 = 0.06972 0.00423 ## OptSubtree 0 0 0 / 118 = 0.00000 0.00000 ## OptSegment 0 1 1 / 256 = 0.00391 0.00137 ## OptAllSegments 0 0 0 / 113 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 121 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 103 = 0.00000 0.00000 ## TweakPhiSubtree 66 592 353 / 1549 = 0.22789 0.00503 ## TweakPhiSegment 52 644 393 / 1420 = 0.27676 0.00527 ## TweakPsiSubtree 1 479 321 / 1519 = 0.21132 0.00507 ## TweakPsiSegment 3 727 484 / 1947 = 0.24859 0.00639 ## TweakPsiPhiSubtree 159 514 309 / 1173 = 0.26343 0.00413 ## TweakPsiPhiSegment 145 470 268 / 1101 = 0.24342 0.00362 ## TweakHbondSubtree 24 326 205 / 1154 = 0.17764 0.00389 ## TweakHbondSegment 16 382 213 / 1173 = 0.18159 0.00406 ## TweakMultimer 358 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 54 242 157 / 535 = 0.29346 0.00137 ## FixOmega 3 0 0 / 110 = 0.00000 0.00000 ## Backrub 218 305 140 / 718 = 0.19499 0.00202 ## BigBackrub 166 122 67 / 596 = 0.11242 0.00225 ## OneRotamer 0 374 181 / 1786 = 0.10134 0.00470 ## ClashingRotamer 2 3 1 / 195 = 0.00513 0.00067 ## ClusteredRotamer 21 5 3 / 171 = 0.01754 0.00069 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 242 = 0.00413 0.00011 ## CloseGap 0 19 6 / 276 = 0.02174 0.00591 ## HealGap 0 15 9 / 340 = 0.02647 0.00074 ## MoveGap 0 0 0 / 116 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 244 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 120 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 227 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 114 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 549 = 0.00000 0.00000 ## CrossOver 0 0 0 / 113 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 23 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 112 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 123 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)N459 # TweakPsiPhi removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)I537 # TweakPsiSubtree removed gap before (T0547)A195 # TweakPsiPhi removed gap before (T0547)L557 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPsiPhi removed gap before (T0547)A214 # TweakPhi removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)G64 # TweakPhi removed gap before (T0547)E386 # TweakPsiSubtree removed gap before (T0547)Y519 # TweakPhi removed gap before (T0547)E162 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I32 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPsiSubtree removed gap before (T0547)N61 # TweakPsiPhi removed gap before (T0547)A69 # TweakPsiPhi removed gap before (T0547)K203 # TweakPhi removed gap before (T0547)I167 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPsiSubtree removed gap before (T0547)D434 # TweakPsiPhi removed gap before (T0547)K135 # TweakPhi removed gap before (T0547)M261 # TweakPsiPhi removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)V336 # TweakPsiSubtree removed gap before (T0547)S490 # TweakPsiSubtree removed gap before (T0547)D562 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPsiPhi removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)D7 # TweakPsiPhi removed gap before (T0547)L100 # TweakPsiPhi removed gap before (T0547)V331 # TweakPsiPhi removed gap before (T0547)F392 # TweakPsiSubtree removed gap before (T0547)F93 # TweakPhi removed gap before (T0547)H527 # TweakPsiPhi removed gap before (T0547)H53 # generation 206: best score out of 40: T0547.try1-opt2 202.94942 cost/residue, 755 clashes 0.12881 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 319 201 / 1043 = 0.19271 0.00340 ## JiggleSubtree 2 49 30 / 473 = 0.06342 0.00480 ## JiggleSegment 5 57 38 / 545 = 0.06972 0.00423 ## OptSubtree 0 0 0 / 118 = 0.00000 0.00000 ## OptSegment 0 1 1 / 256 = 0.00391 0.00137 ## OptAllSegments 0 0 0 / 113 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 121 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 104 = 0.00000 0.00000 ## TweakPhiSubtree 66 593 354 / 1556 = 0.22751 0.00509 ## TweakPhiSegment 52 648 394 / 1426 = 0.27630 0.00525 ## TweakPsiSubtree 1 482 323 / 1530 = 0.21111 0.00503 ## TweakPsiSegment 4 729 485 / 1952 = 0.24846 0.00637 ## TweakPsiPhiSubtree 161 519 311 / 1180 = 0.26356 0.00412 ## TweakPsiPhiSegment 146 472 269 / 1107 = 0.24300 0.00362 ## TweakHbondSubtree 24 330 207 / 1161 = 0.17829 0.00390 ## TweakHbondSegment 17 384 214 / 1176 = 0.18197 0.00406 ## TweakMultimer 362 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 56 243 159 / 540 = 0.29444 0.00140 ## FixOmega 3 0 0 / 110 = 0.00000 0.00000 ## Backrub 219 305 140 / 718 = 0.19499 0.00202 ## BigBackrub 166 122 67 / 602 = 0.11130 0.00223 ## OneRotamer 0 376 182 / 1798 = 0.10122 0.00470 ## ClashingRotamer 2 3 1 / 195 = 0.00513 0.00067 ## ClusteredRotamer 21 5 3 / 171 = 0.01754 0.00069 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 242 = 0.00413 0.00011 ## CloseGap 0 19 6 / 277 = 0.02166 0.00589 ## HealGap 0 15 9 / 341 = 0.02639 0.00074 ## MoveGap 0 0 0 / 117 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 245 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 120 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 227 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 115 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 550 = 0.00000 0.00000 ## CrossOver 0 0 0 / 113 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 23 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 112 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 123 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)E172 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L598 # TweakPsiPhi removed gap before (T0547)N425 # TweakPsiPhi removed gap before (T0547)I592 # TweakPsiPhi removed gap before (T0547)E343 # TweakPsiSubtree removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)G395 # TweakPsiPhi removed gap before (T0547)E488 # TweakPsiSubtree removed gap before (T0547)I556 # TweakPsiSubtree removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)G395 # TweakPsiPhi removed gap before (T0547)A268 # TweakPsiSubtree removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPhi removed gap before (T0547)L258 # TweakPhi removed gap before (T0547)A553 # TweakPsiPhi removed gap before (T0547)N580 # TweakPhi removed gap before (T0547)L511 # TweakPhi removed gap before (T0547)I167 # TweakPsiSubtree removed gap before (T0547)E535 # TweakPsiSubtree removed gap before (T0547)T256 # TweakPsiPhi removed gap before (T0547)I254 # TweakPsiPhi removed gap before (T0547)Y491 # TweakPhi removed gap before (T0547)V215 # TweakPsiPhi removed gap before (T0547)K27 # TweakPsiSubtree removed gap before (T0547)N443 # TweakPsiPhi removed gap before (T0547)Y440 # TweakPsiSubtree removed gap before (T0547)I556 # TweakPsiSubtree removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)F144 # TweakPsiPhi removed gap before (T0547)S490 # TweakPsiSubtree removed gap before (T0547)M450 # TweakPsiPhi removed gap before (T0547)K203 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPsiSubtree removed gap before (T0547)I15 # TweakPsiPhi removed gap before (T0547)L248 # TweakPsiSubtree removed gap before (T0547)D484 # TweakPhi removed gap before (T0547)I153 # TweakPsiSubtree removed gap before (T0547)L211 # TweakPsiSubtree removed gap before (T0547)S280 # TweakPsiSubtree removed gap before (T0547)A536 # generation 207: best score out of 40: T0547.try1-opt2 202.93047 cost/residue, 759 clashes 0.12886 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 322 203 / 1053 = 0.19278 0.00342 ## JiggleSubtree 2 50 30 / 475 = 0.06316 0.00478 ## JiggleSegment 5 57 38 / 545 = 0.06972 0.00423 ## OptSubtree 0 0 0 / 119 = 0.00000 0.00000 ## OptSegment 0 1 1 / 256 = 0.00391 0.00137 ## OptAllSegments 0 0 0 / 114 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 122 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 104 = 0.00000 0.00000 ## TweakPhiSubtree 67 596 354 / 1560 = 0.22692 0.00508 ## TweakPhiSegment 53 650 395 / 1432 = 0.27584 0.00524 ## TweakPsiSubtree 1 485 324 / 1540 = 0.21039 0.00500 ## TweakPsiSegment 4 735 490 / 1965 = 0.24936 0.00640 ## TweakPsiPhiSubtree 163 521 313 / 1187 = 0.26369 0.00414 ## TweakPsiPhiSegment 148 473 272 / 1116 = 0.24373 0.00360 ## TweakHbondSubtree 24 330 207 / 1167 = 0.17738 0.00388 ## TweakHbondSegment 17 385 214 / 1181 = 0.18120 0.00405 ## TweakMultimer 363 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 56 246 161 / 547 = 0.29433 0.00141 ## FixOmega 3 0 0 / 110 = 0.00000 0.00000 ## Backrub 219 305 140 / 719 = 0.19471 0.00202 ## BigBackrub 167 123 68 / 604 = 0.11258 0.00229 ## OneRotamer 0 378 184 / 1811 = 0.10160 0.00469 ## ClashingRotamer 2 3 1 / 195 = 0.00513 0.00067 ## ClusteredRotamer 21 5 3 / 171 = 0.01754 0.00069 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 242 = 0.00413 0.00011 ## CloseGap 0 19 6 / 277 = 0.02166 0.00589 ## HealGap 0 15 9 / 342 = 0.02632 0.00074 ## MoveGap 0 0 0 / 117 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 245 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 120 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 227 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 115 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 551 = 0.00000 0.00000 ## CrossOver 0 0 0 / 113 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 23 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 112 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 123 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)H500 # TweakPsiPhi removed gap before (T0547)V131 # TweakPhi removed gap before (T0547)G205 # TweakPsiSubtree removed gap before (T0547)M525 # TweakPsiPhi removed gap before (T0547)A518 # TweakPhi removed gap before (T0547)E72 # TweakPhi removed gap before (T0547)N603 # TweakPhi removed gap before (T0547)A326 # TweakPsiSubtree removed gap before (T0547)L497 # TweakPhi removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)W479 # TweakPhi removed gap before (T0547)E257 # TweakPsiPhi removed gap before (T0547)N603 # TweakPhi removed gap before (T0547)I34 # TweakPsiPhi removed gap before (T0547)N123 # TweakPsiSubtree removed gap before (T0547)R474 # TweakPhi removed gap before (T0547)D401 # TweakPsiPhi removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)M450 # TweakPsiPhi removed gap before (T0547)E386 # TweakPsiPhi removed gap before (T0547)G512 # TweakPsiPhi removed gap before (T0547)I551 # TweakPsiPhi removed gap before (T0547)T130 # TweakPsiPhi removed gap before (T0547)E240 # TweakPsiSubtree removed gap before (T0547)K493 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)P464 # TweakPsiSubtree removed gap before (T0547)K423 # TweakPhi removed gap before (T0547)I556 # TweakPsiPhi removed gap before (T0547)K76 # TweakPhi removed gap before (T0547)A326 # TweakPhi removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)F51 # TweakPsiPhi removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)N141 # generation 208: best score out of 40: T0547.try1-opt2 202.88397 cost/residue, 755 clashes 0.12881 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 326 207 / 1062 = 0.19492 0.00349 ## JiggleSubtree 3 50 30 / 477 = 0.06289 0.00476 ## JiggleSegment 5 57 38 / 545 = 0.06972 0.00423 ## OptSubtree 0 0 0 / 120 = 0.00000 0.00000 ## OptSegment 0 1 1 / 256 = 0.00391 0.00137 ## OptAllSegments 0 0 0 / 114 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 122 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 104 = 0.00000 0.00000 ## TweakPhiSubtree 67 598 355 / 1569 = 0.22626 0.00505 ## TweakPhiSegment 54 656 400 / 1438 = 0.27816 0.00529 ## TweakPsiSubtree 1 486 325 / 1543 = 0.21063 0.00499 ## TweakPsiSegment 4 737 491 / 1971 = 0.24911 0.00639 ## TweakPsiPhiSubtree 164 525 314 / 1198 = 0.26210 0.00410 ## TweakPsiPhiSegment 151 475 272 / 1121 = 0.24264 0.00358 ## TweakHbondSubtree 24 332 207 / 1177 = 0.17587 0.00385 ## TweakHbondSegment 17 387 215 / 1185 = 0.18143 0.00407 ## TweakMultimer 365 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 56 249 163 / 552 = 0.29529 0.00141 ## FixOmega 3 0 0 / 110 = 0.00000 0.00000 ## Backrub 219 305 140 / 720 = 0.19444 0.00202 ## BigBackrub 168 123 68 / 609 = 0.11166 0.00227 ## OneRotamer 0 380 185 / 1827 = 0.10126 0.00465 ## ClashingRotamer 2 3 1 / 195 = 0.00513 0.00067 ## ClusteredRotamer 21 5 3 / 172 = 0.01744 0.00069 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 242 = 0.00413 0.00011 ## CloseGap 0 19 6 / 278 = 0.02158 0.00587 ## HealGap 0 15 9 / 342 = 0.02632 0.00074 ## MoveGap 0 0 0 / 118 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 245 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 120 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 227 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 115 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 552 = 0.00000 0.00000 ## CrossOver 0 0 0 / 114 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 112 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 124 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)V336 # TweakPsiSubtree removed gap before (T0547)G101 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)M463 # TweakPhi removed gap before (T0547)L118 # TweakPhi removed gap before (T0547)D486 # TweakPhi removed gap before (T0547)L391 # TweakPhi removed gap before (T0547)G19 # TweakPsiSubtree removed gap before (T0547)S188 # TweakPhi removed gap before (T0547)D401 # TweakPsiSubtree removed gap before (T0547)F14 # TweakPsiSubtree removed gap before (T0547)F204 # TweakPsiSubtree removed gap before (T0547)I241 # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPsiSubtree removed gap before (T0547)E308 # TweakPsiSubtree removed gap before (T0547)L523 # TweakPhi removed gap before (T0547)R185 # TweakPhi removed gap before (T0547)N124 # TweakPsiSubtree removed gap before (T0547)S321 # TweakPhi removed gap before (T0547)I254 # TweakPsiPhi removed gap before (T0547)L583 # TweakPhi removed gap before (T0547)V436 # TweakPhi removed gap before (T0547)Q437 # TweakPsiSubtree removed gap before (T0547)H151 # TweakPsiPhi removed gap before (T0547)D494 # TweakPsiSubtree removed gap before (T0547)D503 # TweakPsiPhi removed gap before (T0547)V547 # TweakPhi removed gap before (T0547)G455 # TweakPhi removed gap before (T0547)S321 # TweakPsiPhi removed gap before (T0547)K353 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)G205 # TweakPsiSubtree removed gap before (T0547)S368 # TweakPsiSubtree removed gap before (T0547)S403 # TweakPsiSubtree removed gap before (T0547)Y366 # TweakPsiSubtree removed gap before (T0547)V300 # TweakPhi removed gap before (T0547)L248 # TweakPsiPhi removed gap before (T0547)Y363 # TweakPsiPhi removed gap before (T0547)H329 # TweakPsiPhi removed gap before (T0547)W194 # TweakPsiPhi removed gap before (T0547)A326 # TweakPsiSubtree removed gap before (T0547)V82 # TweakPhi removed gap before (T0547)G262 # TweakPhi removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)G205 # TweakPsiPhi removed gap before (T0547)F204 # TweakPsiPhi removed gap before (T0547)T531 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPhi removed gap before (T0547)K414 # TweakPsiSubtree removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPsiPhi removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)G42 # generation 209: best score out of 40: T0547.try1-opt2 202.78726 cost/residue, 755 clashes 0.12855 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 332 211 / 1071 = 0.19701 0.00365 ## JiggleSubtree 3 50 30 / 477 = 0.06289 0.00476 ## JiggleSegment 5 57 38 / 545 = 0.06972 0.00423 ## OptSubtree 0 0 0 / 120 = 0.00000 0.00000 ## OptSegment 0 1 1 / 256 = 0.00391 0.00137 ## OptAllSegments 0 0 0 / 114 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 122 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 104 = 0.00000 0.00000 ## TweakPhiSubtree 67 599 356 / 1577 = 0.22575 0.00503 ## TweakPhiSegment 54 658 401 / 1447 = 0.27713 0.00526 ## TweakPsiSubtree 1 490 326 / 1550 = 0.21032 0.00497 ## TweakPsiSegment 4 743 492 / 1986 = 0.24773 0.00634 ## TweakPsiPhiSubtree 164 526 315 / 1207 = 0.26098 0.00408 ## TweakPsiPhiSegment 151 476 272 / 1127 = 0.24135 0.00356 ## TweakHbondSubtree 24 333 207 / 1183 = 0.17498 0.00383 ## TweakHbondSegment 17 389 216 / 1188 = 0.18182 0.00412 ## TweakMultimer 368 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 56 252 165 / 562 = 0.29359 0.00139 ## FixOmega 3 0 0 / 110 = 0.00000 0.00000 ## Backrub 219 305 140 / 721 = 0.19417 0.00201 ## BigBackrub 170 123 69 / 613 = 0.11256 0.00227 ## OneRotamer 0 381 186 / 1836 = 0.10131 0.00465 ## ClashingRotamer 2 3 1 / 195 = 0.00513 0.00067 ## ClusteredRotamer 21 5 3 / 172 = 0.01744 0.00069 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 242 = 0.00413 0.00011 ## CloseGap 0 19 6 / 278 = 0.02158 0.00587 ## HealGap 0 15 9 / 342 = 0.02632 0.00074 ## MoveGap 0 0 0 / 118 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 245 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 121 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 227 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 115 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 555 = 0.00000 0.00000 ## CrossOver 0 0 0 / 114 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 112 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 124 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)I556 # TweakPhi removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)K86 # TweakPsiPhi removed gap before (T0547)S287 # TweakPhi removed gap before (T0547)C22 # TweakPsiPhi removed gap before (T0547)N123 # TweakPhi removed gap before (T0547)F599 # TweakPhi removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)F444 # TweakPsiSubtree removed gap before (T0547)V611 # TweakPsiPhi removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)N152 # TweakPsiPhi removed gap before (T0547)V35 # TweakPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)S372 # TweakPsiSubtree removed gap before (T0547)D422 # TweakPsiSubtree removed gap before (T0547)I16 # TweakPsiPhi removed gap before (T0547)F392 # TweakPsiSubtree removed gap before (T0547)N105 # TweakPhi removed gap before (T0547)I8 # TweakPsiPhi removed gap before (T0547)W454 # TweakPhi removed gap before (T0547)H591 # TweakPsiPhi removed gap before (T0547)A476 # TweakPsiSubtree removed gap before (T0547)H568 # TweakPhi removed gap before (T0547)L511 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Q588 # TweakPsiSubtree removed gap before (T0547)L97 # TweakPsiSubtree removed gap before (T0547)T413 # TweakPhi removed gap before (T0547)K246 # TweakPsiPhi removed gap before (T0547)A170 # TweakPhi removed gap before (T0547)H231 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L411 # TweakPsiSubtree removed gap before (T0547)G143 # TweakPhi removed gap before (T0547)I537 # TweakPsiSubtree removed gap before (T0547)S381 # TweakPhi removed gap before (T0547)Q342 # generation 210: best score out of 40: T0547.try1-opt2 202.77568 cost/residue, 755 clashes 0.12839 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 336 213 / 1090 = 0.19541 0.00359 ## JiggleSubtree 3 50 30 / 481 = 0.06237 0.00472 ## JiggleSegment 5 57 38 / 545 = 0.06972 0.00423 ## OptSubtree 0 0 0 / 120 = 0.00000 0.00000 ## OptSegment 0 1 1 / 256 = 0.00391 0.00137 ## OptAllSegments 0 0 0 / 114 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 122 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 104 = 0.00000 0.00000 ## TweakPhiSubtree 67 603 357 / 1584 = 0.22538 0.00501 ## TweakPhiSegment 54 662 403 / 1456 = 0.27679 0.00524 ## TweakPsiSubtree 1 494 327 / 1559 = 0.20975 0.00496 ## TweakPsiSegment 4 746 494 / 1993 = 0.24787 0.00632 ## TweakPsiPhiSubtree 164 527 316 / 1209 = 0.26137 0.00409 ## TweakPsiPhiSegment 151 477 273 / 1133 = 0.24095 0.00355 ## TweakHbondSubtree 24 333 207 / 1185 = 0.17468 0.00383 ## TweakHbondSegment 17 390 216 / 1198 = 0.18030 0.00408 ## TweakMultimer 373 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 57 253 165 / 566 = 0.29152 0.00138 ## FixOmega 3 0 0 / 110 = 0.00000 0.00000 ## Backrub 220 305 140 / 721 = 0.19417 0.00201 ## BigBackrub 171 124 70 / 617 = 0.11345 0.00232 ## OneRotamer 0 382 187 / 1845 = 0.10136 0.00465 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 172 = 0.01744 0.00069 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 242 = 0.00413 0.00011 ## CloseGap 0 19 6 / 278 = 0.02158 0.00587 ## HealGap 0 15 9 / 344 = 0.02616 0.00073 ## MoveGap 0 0 0 / 118 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 245 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 121 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 228 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 116 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 555 = 0.00000 0.00000 ## CrossOver 0 0 0 / 115 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 113 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 125 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L523 # TweakPsiSubtree removed gap before (T0547)P128 # TweakPhi removed gap before (T0547)V336 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)F392 # TweakPhi removed gap before (T0547)L497 # TweakPsiSubtree removed gap before (T0547)F93 # TweakPhi removed gap before (T0547)V35 # TweakPhi removed gap before (T0547)S475 # TweakPsiPhi removed gap before (T0547)L244 # TweakPsiSubtree removed gap before (T0547)P46 # TweakPsiSubtree removed gap before (T0547)K607 # TweakPhi removed gap before (T0547)H500 # TweakPsiPhi removed gap before (T0547)N105 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)T228 # TweakPsiSubtree removed gap before (T0547)R288 # TweakPhi removed gap before (T0547)K286 # TweakPsiPhi removed gap before (T0547)I432 # TweakPsiPhi removed gap before (T0547)N80 # TweakPsiSubtree removed gap before (T0547)N270 # TweakPhi removed gap before (T0547)T473 # TweakPsiPhi removed gap before (T0547)M149 # TweakPsiSubtree removed gap before (T0547)I62 # TweakPsiPhi removed gap before (T0547)L332 # TweakPhi removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)G604 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPhi removed gap before (T0547)D360 # TweakPhi removed gap before (T0547)S485 # TweakPsiPhi removed gap before (T0547)F282 # TweakPsiSubtree removed gap before (T0547)E488 # TweakPsiSubtree removed gap before (T0547)L47 # TweakPsiSubtree removed gap before (T0547)A276 # TweakPhi removed gap before (T0547)K175 # TweakPsiSubtree removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)G126 # TweakPsiSubtree removed gap before (T0547)K95 # TweakPsiPhi removed gap before (T0547)L596 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)M450 # TweakPsiPhi removed gap before (T0547)I169 # TweakPsiSubtree removed gap before (T0547)E257 # generation 211: best score out of 40: T0547.try1-opt2 202.73982 cost/residue, 754 clashes 0.12889 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 343 217 / 1103 = 0.19674 0.00356 ## JiggleSubtree 3 50 30 / 484 = 0.06198 0.00469 ## JiggleSegment 5 57 38 / 545 = 0.06972 0.00423 ## OptSubtree 0 0 0 / 122 = 0.00000 0.00000 ## OptSegment 0 1 1 / 257 = 0.00389 0.00136 ## OptAllSegments 0 0 0 / 114 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 123 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 104 = 0.00000 0.00000 ## TweakPhiSubtree 67 606 358 / 1593 = 0.22473 0.00499 ## TweakPhiSegment 55 664 404 / 1464 = 0.27596 0.00523 ## TweakPsiSubtree 2 496 327 / 1564 = 0.20908 0.00494 ## TweakPsiSegment 4 750 496 / 2004 = 0.24750 0.00629 ## TweakPsiPhiSubtree 166 529 318 / 1215 = 0.26173 0.00408 ## TweakPsiPhiSegment 152 480 274 / 1138 = 0.24077 0.00356 ## TweakHbondSubtree 24 334 208 / 1190 = 0.17479 0.00382 ## TweakHbondSegment 17 391 218 / 1205 = 0.18091 0.00409 ## TweakMultimer 377 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 57 254 165 / 568 = 0.29049 0.00137 ## FixOmega 3 0 0 / 110 = 0.00000 0.00000 ## Backrub 222 305 140 / 722 = 0.19391 0.00201 ## BigBackrub 172 125 70 / 620 = 0.11290 0.00231 ## OneRotamer 0 383 188 / 1857 = 0.10124 0.00464 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 173 = 0.01734 0.00068 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 243 = 0.00412 0.00011 ## CloseGap 0 19 6 / 279 = 0.02151 0.00585 ## HealGap 0 15 9 / 344 = 0.02616 0.00073 ## MoveGap 0 0 0 / 118 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 245 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 121 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 228 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 116 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 558 = 0.00000 0.00000 ## CrossOver 0 0 0 / 115 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 113 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 125 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)G262 # TweakPsiPhi removed gap before (T0547)E172 # TweakPsiSubtree removed gap before (T0547)S485 # TweakPsiPhi removed gap before (T0547)F51 # TweakPhi removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)N249 # TweakPhi removed gap before (T0547)A127 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I432 # TweakPsiPhi removed gap before (T0547)K283 # TweakPsiSubtree removed gap before (T0547)S372 # TweakPsiPhi removed gap before (T0547)I306 # TweakPsiPhi removed gap before (T0547)A119 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)D364 # TweakPhi removed gap before (T0547)N123 # TweakPhi removed gap before (T0547)Q56 # TweakPsiPhi removed gap before (T0547)N80 # TweakPsiPhi removed gap before (T0547)M2 # TweakPhi removed gap before (T0547)K506 # TweakPhi removed gap before (T0547)A146 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)L574 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)V397 # TweakPsiSubtree removed gap before (T0547)H527 # TweakPhi removed gap before (T0547)E521 # TweakPhi removed gap before (T0547)K260 # TweakPsiSubtree removed gap before (T0547)S280 # TweakPhi removed gap before (T0547)E162 # TweakPhi removed gap before (T0547)I350 # TweakPhi removed gap before (T0547)L206 # TweakPhi removed gap before (T0547)V94 # TweakPsiSubtree removed gap before (T0547)G252 # TweakPhi removed gap before (T0547)T534 # generation 212: best score out of 40: T0547.try1-opt2 202.65059 cost/residue, 754 clashes 0.12889 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 345 219 / 1111 = 0.19712 0.00361 ## JiggleSubtree 3 51 30 / 486 = 0.06173 0.00467 ## JiggleSegment 5 57 38 / 545 = 0.06972 0.00423 ## OptSubtree 0 0 0 / 122 = 0.00000 0.00000 ## OptSegment 0 1 1 / 257 = 0.00389 0.00136 ## OptAllSegments 0 0 0 / 114 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 124 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 104 = 0.00000 0.00000 ## TweakPhiSubtree 67 609 360 / 1601 = 0.22486 0.00498 ## TweakPhiSegment 56 668 405 / 1471 = 0.27532 0.00525 ## TweakPsiSubtree 2 497 327 / 1566 = 0.20881 0.00493 ## TweakPsiSegment 4 752 498 / 2011 = 0.24764 0.00636 ## TweakPsiPhiSubtree 166 529 318 / 1221 = 0.26044 0.00406 ## TweakPsiPhiSegment 152 483 277 / 1143 = 0.24234 0.00356 ## TweakHbondSubtree 24 336 208 / 1198 = 0.17362 0.00380 ## TweakHbondSegment 17 393 218 / 1213 = 0.17972 0.00406 ## TweakMultimer 379 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 57 256 166 / 574 = 0.28920 0.00136 ## FixOmega 3 0 0 / 111 = 0.00000 0.00000 ## Backrub 224 306 140 / 725 = 0.19310 0.00200 ## BigBackrub 173 128 71 / 629 = 0.11288 0.00229 ## OneRotamer 0 384 188 / 1866 = 0.10075 0.00462 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 175 = 0.01714 0.00067 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 243 = 0.00412 0.00011 ## CloseGap 0 19 6 / 280 = 0.02143 0.00583 ## HealGap 0 15 9 / 345 = 0.02609 0.00073 ## MoveGap 0 0 0 / 119 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 245 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 122 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 228 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 117 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 560 = 0.00000 0.00000 ## CrossOver 0 0 0 / 116 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 113 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 125 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)S475 # TweakPsiPhi removed gap before (T0547)I359 # TweakPsiPhi removed gap before (T0547)A146 # TweakPhi removed gap before (T0547)A518 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E213 # TweakPhi removed gap before (T0547)N459 # TweakPsiSubtree removed gap before (T0547)L465 # TweakPsiSubtree removed gap before (T0547)F453 # TweakPhi removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)I350 # TweakPsiPhi removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)E148 # TweakPsiSubtree removed gap before (T0547)A330 # TweakPhi removed gap before (T0547)S321 # TweakPsiPhi removed gap before (T0547)N270 # TweakPhi removed gap before (T0547)S477 # TweakPhi removed gap before (T0547)F73 # TweakPhi removed gap before (T0547)N132 # TweakPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)I592 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)Q554 # TweakPsiSubtree removed gap before (T0547)V436 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)S579 # TweakPsiSubtree removed gap before (T0547)I157 # TweakPsiSubtree removed gap before (T0547)G273 # TweakPsiPhi removed gap before (T0547)A427 # TweakPsiSubtree removed gap before (T0547)V331 # TweakPsiSubtree removed gap before (T0547)P315 # TweakPsiPhi removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)L600 # TweakPsiSubtree removed gap before (T0547)L100 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPhi removed gap before (T0547)K304 # TweakPsiPhi removed gap before (T0547)L339 # TweakPhi removed gap before (T0547)E250 # TweakPsiPhi removed gap before (T0547)E250 # TweakPsiSubtree removed gap before (T0547)D501 # TweakPhi removed gap before (T0547)L375 # TweakPsiSubtree removed gap before (T0547)H53 # TweakPsiPhi removed gap before (T0547)S490 # TweakPhi removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)L365 # generation 213: best score out of 40: T0547.try1-opt2 202.61627 cost/residue, 754 clashes 0.12845 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 348 219 / 1121 = 0.19536 0.00358 ## JiggleSubtree 3 52 31 / 490 = 0.06327 0.00468 ## JiggleSegment 5 57 38 / 545 = 0.06972 0.00423 ## OptSubtree 0 0 0 / 123 = 0.00000 0.00000 ## OptSegment 0 1 1 / 257 = 0.00389 0.00136 ## OptAllSegments 0 0 0 / 114 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 125 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 104 = 0.00000 0.00000 ## TweakPhiSubtree 67 610 361 / 1604 = 0.22506 0.00497 ## TweakPhiSegment 57 675 408 / 1482 = 0.27530 0.00522 ## TweakPsiSubtree 2 498 327 / 1571 = 0.20815 0.00492 ## TweakPsiSegment 4 758 501 / 2026 = 0.24729 0.00633 ## TweakPsiPhiSubtree 166 530 319 / 1227 = 0.25998 0.00404 ## TweakPsiPhiSegment 153 486 278 / 1149 = 0.24195 0.00356 ## TweakHbondSubtree 25 337 208 / 1201 = 0.17319 0.00379 ## TweakHbondSegment 17 394 219 / 1218 = 0.17980 0.00406 ## TweakMultimer 381 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 57 257 166 / 577 = 0.28769 0.00136 ## FixOmega 3 0 0 / 112 = 0.00000 0.00000 ## Backrub 225 308 140 / 727 = 0.19257 0.00200 ## BigBackrub 175 129 72 / 638 = 0.11285 0.00232 ## OneRotamer 0 386 190 / 1876 = 0.10128 0.00463 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 175 = 0.01714 0.00067 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 243 = 0.00412 0.00011 ## CloseGap 0 19 6 / 280 = 0.02143 0.00583 ## HealGap 0 15 9 / 345 = 0.02609 0.00073 ## MoveGap 0 0 0 / 120 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 246 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 123 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 228 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 117 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 560 = 0.00000 0.00000 ## CrossOver 0 0 0 / 116 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 114 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 126 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPhi removed gap before (T0547)F324 # TweakPhi removed gap before (T0547)R39 # TweakPsiSubtree removed gap before (T0547)G45 # TweakPsiSubtree removed gap before (T0547)N253 # TweakPsiPhi removed gap before (T0547)H591 # TweakPhi removed gap before (T0547)D312 # TweakPsiPhi removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)A307 # TweakPsiPhi removed gap before (T0547)L420 # TweakPsiSubtree removed gap before (T0547)A416 # TweakPhi removed gap before (T0547)E164 # TweakPsiPhi removed gap before (T0547)G133 # TweakPsiPhi removed gap before (T0547)L375 # TweakPhi removed gap before (T0547)Q433 # TweakPhi removed gap before (T0547)K203 # TweakPhi removed gap before (T0547)D40 # TweakPsiPhi removed gap before (T0547)I537 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPsiPhi removed gap before (T0547)D3 # TweakPhi removed gap before (T0547)Q309 # TweakPsiSubtree removed gap before (T0547)E376 # TweakPsiSubtree removed gap before (T0547)K582 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPsiPhi removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)H53 # TweakPsiPhi removed gap before (T0547)E595 # TweakPhi removed gap before (T0547)F73 # TweakPhi removed gap before (T0547)L606 # TweakPsiPhi removed gap before (T0547)L139 # TweakPhi removed gap before (T0547)F14 # TweakPsiPhi removed gap before (T0547)Y509 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I62 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)S445 # TweakPhi removed gap before (T0547)T409 # TweakPsiSubtree removed gap before (T0547)L418 # TweakPhi removed gap before (T0547)L186 # TweakPhi removed gap before (T0547)K310 # TweakPsiSubtree removed gap before (T0547)V87 # generation 214: best score out of 40: T0547.try1-opt2 202.61627 cost/residue, 754 clashes 0.12845 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 351 221 / 1131 = 0.19540 0.00356 ## JiggleSubtree 3 52 31 / 495 = 0.06263 0.00464 ## JiggleSegment 5 57 38 / 545 = 0.06972 0.00423 ## OptSubtree 0 0 0 / 124 = 0.00000 0.00000 ## OptSegment 0 1 1 / 258 = 0.00388 0.00136 ## OptAllSegments 0 0 0 / 114 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 125 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 104 = 0.00000 0.00000 ## TweakPhiSubtree 67 612 363 / 1612 = 0.22519 0.00495 ## TweakPhiSegment 57 679 409 / 1490 = 0.27450 0.00519 ## TweakPsiSubtree 2 499 328 / 1575 = 0.20825 0.00491 ## TweakPsiSegment 4 764 505 / 2037 = 0.24791 0.00633 ## TweakPsiPhiSubtree 166 533 320 / 1234 = 0.25932 0.00402 ## TweakPsiPhiSegment 153 489 278 / 1156 = 0.24048 0.00354 ## TweakHbondSubtree 25 338 209 / 1202 = 0.17388 0.00378 ## TweakHbondSegment 17 397 219 / 1223 = 0.17907 0.00404 ## TweakMultimer 387 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 57 257 166 / 579 = 0.28670 0.00135 ## FixOmega 3 0 0 / 112 = 0.00000 0.00000 ## Backrub 225 308 140 / 728 = 0.19231 0.00199 ## BigBackrub 177 130 73 / 644 = 0.11335 0.00230 ## OneRotamer 0 387 190 / 1891 = 0.10048 0.00459 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 175 = 0.01714 0.00067 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 245 = 0.00408 0.00011 ## CloseGap 0 20 6 / 281 = 0.02135 0.00581 ## HealGap 0 15 9 / 345 = 0.02609 0.00073 ## MoveGap 0 0 0 / 120 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 247 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 124 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 230 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 118 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 560 = 0.00000 0.00000 ## CrossOver 0 0 0 / 116 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 114 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 126 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)R288 # TweakPhi removed gap before (T0547)K607 # TweakPsiPhi removed gap before (T0547)L456 # TweakPsiPhi removed gap before (T0547)I34 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)P356 # TweakPsiPhi removed gap before (T0547)A374 # TweakPsiPhi removed gap before (T0547)E26 # TweakPhi removed gap before (T0547)W454 # TweakPsiSubtree removed gap before (T0547)N132 # TweakPhi removed gap before (T0547)D383 # TweakPhi removed gap before (T0547)D380 # TweakPsiPhi removed gap before (T0547)D466 # TweakPsiPhi removed gap before (T0547)D3 # TweakPsiSubtree removed gap before (T0547)L523 # TweakPhi removed gap before (T0547)L54 # TweakPhi removed gap before (T0547)E172 # TweakPsiPhi removed gap before (T0547)K310 # TweakPsiSubtree removed gap before (T0547)L139 # TweakPhi removed gap before (T0547)E595 # TweakPsiSubtree removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)G235 # TweakPsiPhi removed gap before (T0547)Y25 # TweakPsiPhi removed gap before (T0547)R293 # TweakPsiSubtree removed gap before (T0547)P243 # TweakPhi removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)L418 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)E285 # TweakPsiPhi removed gap before (T0547)E294 # TweakPsiPhi removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)A263 # TweakPsiSubtree removed gap before (T0547)R474 # generation 215: best score out of 40: T0547.try1-opt2 202.50067 cost/residue, 745 clashes 0.12901 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 355 224 / 1146 = 0.19546 0.00355 ## JiggleSubtree 3 52 31 / 499 = 0.06212 0.00460 ## JiggleSegment 5 57 38 / 545 = 0.06972 0.00423 ## OptSubtree 0 0 0 / 124 = 0.00000 0.00000 ## OptSegment 0 1 1 / 258 = 0.00388 0.00136 ## OptAllSegments 0 0 0 / 115 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 125 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 105 = 0.00000 0.00000 ## TweakPhiSubtree 68 614 365 / 1618 = 0.22559 0.00494 ## TweakPhiSegment 57 683 410 / 1496 = 0.27406 0.00518 ## TweakPsiSubtree 2 502 330 / 1581 = 0.20873 0.00490 ## TweakPsiSegment 4 767 506 / 2045 = 0.24743 0.00633 ## TweakPsiPhiSubtree 166 534 321 / 1237 = 0.25950 0.00404 ## TweakPsiPhiSegment 153 494 280 / 1164 = 0.24055 0.00353 ## TweakHbondSubtree 25 339 209 / 1205 = 0.17344 0.00378 ## TweakHbondSegment 17 397 219 / 1229 = 0.17819 0.00402 ## TweakMultimer 390 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 58 259 168 / 584 = 0.28767 0.00136 ## FixOmega 3 0 0 / 113 = 0.00000 0.00000 ## Backrub 225 308 140 / 729 = 0.19204 0.00199 ## BigBackrub 179 131 74 / 649 = 0.11402 0.00235 ## OneRotamer 0 390 193 / 1902 = 0.10147 0.00470 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 175 = 0.01714 0.00067 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 246 = 0.00407 0.00011 ## CloseGap 0 20 6 / 281 = 0.02135 0.00581 ## HealGap 0 15 9 / 345 = 0.02609 0.00073 ## MoveGap 0 0 0 / 120 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 247 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 126 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 232 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 119 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 561 = 0.00000 0.00000 ## CrossOver 0 0 0 / 118 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 115 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 126 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)D469 # TweakPhi removed gap before (T0547)E294 # TweakPsiSubtree removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)Y122 # TweakPhi removed gap before (T0547)D360 # TweakPsiPhi removed gap before (T0547)L418 # TweakPhi removed gap before (T0547)T228 # TweakPhi removed gap before (T0547)A251 # TweakPsiSubtree removed gap before (T0547)K28 # TweakPsiPhi removed gap before (T0547)L418 # TweakPsiPhi removed gap before (T0547)F444 # TweakPhi removed gap before (T0547)I153 # TweakPhi removed gap before (T0547)D586 # TweakPsiPhi removed gap before (T0547)L418 # TweakPsiPhi removed gap before (T0547)N216 # TweakPhi removed gap before (T0547)N355 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPsiSubtree removed gap before (T0547)Y75 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L420 # TweakPhi removed gap before (T0547)G143 # TweakPsiPhi removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPhi removed gap before (T0547)K245 # TweakPsiSubtree removed gap before (T0547)F232 # TweakPsiPhi removed gap before (T0547)N96 # TweakPsiSubtree removed gap before (T0547)P128 # TweakPhi removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)Q424 # TweakPsiPhi removed gap before (T0547)F93 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPsiPhi removed gap before (T0547)L441 # TweakPsiPhi removed gap before (T0547)G111 # TweakPsiPhi removed gap before (T0547)D364 # TweakPhi removed gap before (T0547)G274 # TweakPsiSubtree removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)K311 # TweakPhi removed gap before (T0547)K57 # TweakPsiPhi removed gap before (T0547)S197 # TweakPsiSubtree removed gap before (T0547)H591 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)V611 # TweakPsiPhi removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)H591 # TweakPsiSubtree removed gap before (T0547)P176 # TweakPsiSubtree removed gap before (T0547)N249 # generation 216: best score out of 40: T0547.try1-opt2 202.45610 cost/residue, 745 clashes 0.12888 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 357 226 / 1156 = 0.19550 0.00354 ## JiggleSubtree 3 52 31 / 502 = 0.06175 0.00457 ## JiggleSegment 5 57 38 / 546 = 0.06960 0.00422 ## OptSubtree 0 0 0 / 126 = 0.00000 0.00000 ## OptSegment 0 1 1 / 258 = 0.00388 0.00136 ## OptAllSegments 0 0 0 / 116 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 126 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 105 = 0.00000 0.00000 ## TweakPhiSubtree 68 615 366 / 1626 = 0.22509 0.00492 ## TweakPhiSegment 57 686 410 / 1504 = 0.27261 0.00515 ## TweakPsiSubtree 2 505 332 / 1587 = 0.20920 0.00492 ## TweakPsiSegment 4 772 508 / 2055 = 0.24720 0.00630 ## TweakPsiPhiSubtree 167 536 321 / 1244 = 0.25804 0.00402 ## TweakPsiPhiSegment 156 497 281 / 1174 = 0.23935 0.00350 ## TweakHbondSubtree 25 341 210 / 1210 = 0.17355 0.00377 ## TweakHbondSegment 17 398 219 / 1232 = 0.17776 0.00401 ## TweakMultimer 391 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 59 260 168 / 585 = 0.28718 0.00136 ## FixOmega 3 0 0 / 114 = 0.00000 0.00000 ## Backrub 226 308 140 / 731 = 0.19152 0.00199 ## BigBackrub 180 131 74 / 650 = 0.11385 0.00235 ## OneRotamer 0 391 193 / 1915 = 0.10078 0.00467 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 175 = 0.01714 0.00067 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 247 = 0.00405 0.00011 ## CloseGap 0 20 6 / 281 = 0.02135 0.00581 ## HealGap 0 15 9 / 345 = 0.02609 0.00073 ## MoveGap 0 0 0 / 120 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 249 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 127 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 232 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 119 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 563 = 0.00000 0.00000 ## CrossOver 0 0 0 / 118 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 116 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 126 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L399 # TweakPsiSubtree removed gap before (T0547)A251 # TweakPsiSubtree removed gap before (T0547)K71 # TweakPsiSubtree removed gap before (T0547)A119 # TweakPsiSubtree removed gap before (T0547)E60 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)D33 # TweakPhi removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)K171 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)K587 # TweakPsiSubtree removed gap before (T0547)A30 # TweakPsiSubtree removed gap before (T0547)I537 # TweakPhi removed gap before (T0547)Y440 # TweakPsiSubtree removed gap before (T0547)L339 # TweakPhi removed gap before (T0547)I382 # TweakPsiSubtree removed gap before (T0547)D469 # TweakPhi removed gap before (T0547)R323 # TweakPsiPhi removed gap before (T0547)E346 # TweakPsiSubtree removed gap before (T0547)G235 # TweakPsiPhi removed gap before (T0547)F204 # TweakPsiSubtree removed gap before (T0547)Q554 # TweakPsiPhi removed gap before (T0547)K102 # TweakPsiSubtree removed gap before (T0547)K587 # TweakPsiSubtree removed gap before (T0547)F324 # TweakPsiPhi removed gap before (T0547)A170 # TweakPsiPhi removed gap before (T0547)E521 # TweakPsiSubtree removed gap before (T0547)I238 # TweakPhi removed gap before (T0547)N216 # TweakPsiPhi removed gap before (T0547)L391 # TweakPhi removed gap before (T0547)F453 # TweakPsiSubtree removed gap before (T0547)L391 # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPhi removed gap before (T0547)D586 # TweakPsiSubtree removed gap before (T0547)V436 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)K543 # TweakPsiPhi removed gap before (T0547)I556 # TweakPhi removed gap before (T0547)Q520 # TweakPsiSubtree removed gap before (T0547)E240 # TweakPsiPhi removed gap before (T0547)K57 # TweakPsiPhi removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)S579 # generation 217: best score out of 40: T0547.try1-opt2 202.43047 cost/residue, 744 clashes 0.12904 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 358 228 / 1165 = 0.19571 0.00351 ## JiggleSubtree 3 52 31 / 504 = 0.06151 0.00455 ## JiggleSegment 5 57 38 / 546 = 0.06960 0.00422 ## OptSubtree 0 0 0 / 126 = 0.00000 0.00000 ## OptSegment 0 1 1 / 258 = 0.00388 0.00136 ## OptAllSegments 0 0 0 / 116 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 126 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 105 = 0.00000 0.00000 ## TweakPhiSubtree 68 617 366 / 1631 = 0.22440 0.00490 ## TweakPhiSegment 57 691 410 / 1513 = 0.27098 0.00512 ## TweakPsiSubtree 2 506 332 / 1593 = 0.20841 0.00490 ## TweakPsiSegment 4 776 510 / 2066 = 0.24685 0.00632 ## TweakPsiPhiSubtree 167 537 321 / 1252 = 0.25639 0.00399 ## TweakPsiPhiSegment 156 501 285 / 1182 = 0.24112 0.00351 ## TweakHbondSubtree 25 342 211 / 1214 = 0.17381 0.00376 ## TweakHbondSegment 17 401 220 / 1238 = 0.17771 0.00400 ## TweakMultimer 393 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 60 261 169 / 590 = 0.28644 0.00135 ## FixOmega 3 0 0 / 115 = 0.00000 0.00000 ## Backrub 227 308 140 / 732 = 0.19126 0.00198 ## BigBackrub 183 132 74 / 657 = 0.11263 0.00232 ## OneRotamer 0 395 195 / 1926 = 0.10125 0.00466 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 176 = 0.01705 0.00067 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 247 = 0.00405 0.00011 ## CloseGap 0 20 6 / 281 = 0.02135 0.00581 ## HealGap 0 15 9 / 346 = 0.02601 0.00073 ## MoveGap 0 0 0 / 122 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 249 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 127 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 233 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 120 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 564 = 0.00000 0.00000 ## CrossOver 0 0 0 / 118 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 116 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 126 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)A263 # TweakPhi removed gap before (T0547)L337 # TweakPsiPhi removed gap before (T0547)G455 # TweakPsiSubtree removed gap before (T0547)N284 # TweakPsiSubtree removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)G192 # TweakPsiSubtree removed gap before (T0547)K582 # TweakPsiSubtree removed gap before (T0547)D466 # TweakPhi removed gap before (T0547)G421 # TweakPsiSubtree removed gap before (T0547)G205 # TweakPsiSubtree removed gap before (T0547)D103 # TweakPsiPhi removed gap before (T0547)L419 # TweakPsiPhi removed gap before (T0547)F232 # TweakPhi removed gap before (T0547)L389 # TweakPsiSubtree removed gap before (T0547)E552 # TweakPsiSubtree removed gap before (T0547)E595 # TweakPsiPhi removed gap before (T0547)N216 # TweakPsiSubtree removed gap before (T0547)I570 # TweakPsiSubtree removed gap before (T0547)L186 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)S485 # TweakPhi removed gap before (T0547)V131 # TweakPhi removed gap before (T0547)G524 # TweakPsiPhi removed gap before (T0547)T207 # TweakPsiSubtree removed gap before (T0547)Q309 # TweakPhi removed gap before (T0547)K203 # TweakPsiPhi removed gap before (T0547)K267 # TweakPsiSubtree removed gap before (T0547)L271 # TweakPsiSubtree removed gap before (T0547)M463 # TweakPhi removed gap before (T0547)L108 # TweakPhi removed gap before (T0547)N355 # TweakPsiSubtree removed gap before (T0547)E308 # TweakPhi removed gap before (T0547)Y255 # TweakPsiPhi removed gap before (T0547)E338 # TweakPsiPhi removed gap before (T0547)E250 # TweakPsiSubtree removed gap before (T0547)N105 # TweakPsiPhi removed gap before (T0547)I489 # TweakPhi removed gap before (T0547)G78 # TweakPsiPhi removed gap before (T0547)A553 # TweakPhi removed gap before (T0547)H151 # TweakPhi removed gap before (T0547)K367 # TweakPsiPhi removed gap before (T0547)A119 # TweakPhi removed gap before (T0547)R467 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPsiSubtree removed gap before (T0547)P46 # TweakPsiPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)V215 # TweakPsiPhi removed gap before (T0547)G262 # generation 218: best score out of 40: T0547.try1-opt2 202.39212 cost/residue, 744 clashes 0.12892 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 360 229 / 1173 = 0.19523 0.00349 ## JiggleSubtree 3 52 31 / 509 = 0.06090 0.00451 ## JiggleSegment 5 57 38 / 546 = 0.06960 0.00422 ## OptSubtree 0 0 0 / 126 = 0.00000 0.00000 ## OptSegment 0 1 1 / 258 = 0.00388 0.00136 ## OptAllSegments 0 0 0 / 116 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 126 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 105 = 0.00000 0.00000 ## TweakPhiSubtree 68 622 370 / 1641 = 0.22547 0.00490 ## TweakPhiSegment 57 694 412 / 1518 = 0.27141 0.00513 ## TweakPsiSubtree 2 506 332 / 1598 = 0.20776 0.00488 ## TweakPsiSegment 4 781 513 / 2081 = 0.24652 0.00629 ## TweakPsiPhiSubtree 169 542 326 / 1261 = 0.25852 0.00402 ## TweakPsiPhiSegment 156 503 287 / 1188 = 0.24158 0.00350 ## TweakHbondSubtree 25 344 213 / 1220 = 0.17459 0.00379 ## TweakHbondSegment 17 401 220 / 1240 = 0.17742 0.00400 ## TweakMultimer 393 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 61 264 172 / 596 = 0.28859 0.00136 ## FixOmega 3 0 0 / 115 = 0.00000 0.00000 ## Backrub 227 308 140 / 732 = 0.19126 0.00198 ## BigBackrub 183 133 75 / 660 = 0.11364 0.00233 ## OneRotamer 0 396 195 / 1938 = 0.10062 0.00463 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 176 = 0.01705 0.00067 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 249 = 0.00402 0.00011 ## CloseGap 0 20 6 / 283 = 0.02120 0.00577 ## HealGap 0 15 9 / 348 = 0.02586 0.00072 ## MoveGap 0 0 0 / 122 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 249 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 128 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 233 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 120 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 565 = 0.00000 0.00000 ## CrossOver 0 0 0 / 118 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 116 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 126 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)D469 # TweakPsiPhi removed gap before (T0547)L362 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPsiPhi removed gap before (T0547)N528 # TweakPsiSubtree removed gap before (T0547)A30 # TweakPhi removed gap before (T0547)I592 # TweakPsiSubtree removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)K135 # TweakPsiPhi removed gap before (T0547)A427 # TweakPhi removed gap before (T0547)K589 # TweakPsiSubtree removed gap before (T0547)I166 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)E576 # TweakPsiSubtree removed gap before (T0547)R39 # TweakPhi removed gap before (T0547)I333 # TweakPsiPhi removed gap before (T0547)K135 # TweakPhi removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)E320 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPsiSubtree removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)A405 # TweakPsiPhi removed gap before (T0547)Y491 # TweakPsiSubtree removed gap before (T0547)H329 # TweakPhi removed gap before (T0547)G190 # TweakPsiPhi removed gap before (T0547)N575 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPhi removed gap before (T0547)F14 # TweakPsiPhi removed gap before (T0547)A30 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L499 # TweakPsiPhi removed gap before (T0547)A476 # TweakPsiPhi removed gap before (T0547)A296 # TweakPsiSubtree removed gap before (T0547)S372 # TweakPsiPhi removed gap before (T0547)G45 # TweakPsiPhi removed gap before (T0547)N404 # TweakPsiSubtree removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)I31 # TweakPsiPhi removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)V584 # TweakPsiSubtree removed gap before (T0547)D41 # TweakPhi removed gap before (T0547)K245 # TweakPsiPhi removed gap before (T0547)D298 # TweakPsiPhi removed gap before (T0547)D380 # TweakPsiSubtree removed gap before (T0547)I573 # TweakPsiSubtree removed gap before (T0547)D469 # TweakPsiPhi removed gap before (T0547)E552 # TweakPsiPhi removed gap before (T0547)E346 # generation 219: best score out of 40: T0547.try1-opt2 202.37775 cost/residue, 744 clashes 0.12892 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 365 234 / 1184 = 0.19764 0.00349 ## JiggleSubtree 3 52 31 / 512 = 0.06055 0.00448 ## JiggleSegment 5 57 38 / 546 = 0.06960 0.00422 ## OptSubtree 0 0 0 / 127 = 0.00000 0.00000 ## OptSegment 0 1 1 / 258 = 0.00388 0.00136 ## OptAllSegments 0 0 0 / 117 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 126 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 105 = 0.00000 0.00000 ## TweakPhiSubtree 68 625 373 / 1652 = 0.22579 0.00490 ## TweakPhiSegment 57 696 414 / 1522 = 0.27201 0.00512 ## TweakPsiSubtree 2 507 334 / 1604 = 0.20823 0.00488 ## TweakPsiSegment 4 789 516 / 2095 = 0.24630 0.00626 ## TweakPsiPhiSubtree 170 546 331 / 1273 = 0.26002 0.00406 ## TweakPsiPhiSegment 156 504 289 / 1194 = 0.24204 0.00349 ## TweakHbondSubtree 25 345 214 / 1226 = 0.17455 0.00378 ## TweakHbondSegment 17 403 221 / 1244 = 0.17765 0.00400 ## TweakMultimer 393 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 61 265 173 / 598 = 0.28930 0.00136 ## FixOmega 4 0 0 / 115 = 0.00000 0.00000 ## Backrub 228 308 140 / 733 = 0.19100 0.00198 ## BigBackrub 184 134 75 / 665 = 0.11278 0.00231 ## OneRotamer 0 398 197 / 1947 = 0.10118 0.00462 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 176 = 0.01705 0.00067 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 250 = 0.00400 0.00011 ## CloseGap 0 20 6 / 283 = 0.02120 0.00577 ## HealGap 0 15 9 / 348 = 0.02586 0.00072 ## MoveGap 0 0 0 / 122 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 249 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 128 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 234 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 120 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 566 = 0.00000 0.00000 ## CrossOver 0 0 0 / 119 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 116 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 126 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)E148 # TweakPsiSubtree removed gap before (T0547)G395 # TweakPsiSubtree removed gap before (T0547)E162 # TweakPsiPhi removed gap before (T0547)E257 # TweakPsiPhi removed gap before (T0547)N18 # TweakPsiSubtree removed gap before (T0547)G107 # TweakPsiPhi removed gap before (T0547)G150 # TweakPhi removed gap before (T0547)S287 # TweakPhi removed gap before (T0547)I359 # TweakPsiPhi removed gap before (T0547)G150 # TweakPhi removed gap before (T0547)K171 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)V300 # TweakPhi removed gap before (T0547)K177 # TweakPsiSubtree removed gap before (T0547)K311 # TweakPhi removed gap before (T0547)E162 # TweakPsiPhi removed gap before (T0547)I16 # TweakPsiSubtree removed gap before (T0547)Q226 # TweakPsiPhi removed gap before (T0547)E457 # TweakPsiSubtree removed gap before (T0547)G395 # TweakPsiPhi removed gap before (T0547)T256 # TweakPsiPhi removed gap before (T0547)H187 # TweakPsiSubtree removed gap before (T0547)P128 # TweakPsiSubtree removed gap before (T0547)V516 # TweakPsiSubtree removed gap before (T0547)I140 # TweakPsiPhi removed gap before (T0547)E250 # TweakPhi removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPsiSubtree removed gap before (T0547)Q448 # TweakPsiPhi removed gap before (T0547)L351 # TweakPsiSubtree removed gap before (T0547)L206 # TweakPsiPhi removed gap before (T0547)Q89 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V35 # TweakPsiPhi removed gap before (T0547)V191 # TweakPsiSubtree removed gap before (T0547)L186 # TweakPsiPhi removed gap before (T0547)I212 # TweakPsiSubtree removed gap before (T0547)Q281 # TweakPsiPhi removed gap before (T0547)Q433 # TweakPsiSubtree removed gap before (T0547)L560 # TweakPsiPhi removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)F227 # TweakPsiSubtree removed gap before (T0547)G190 # TweakPsiSubtree removed gap before (T0547)L155 # TweakPsiPhi removed gap before (T0547)F444 # generation 220: best score out of 40: T0547.try1-opt2 202.36374 cost/residue, 743 clashes 0.12892 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 367 235 / 1196 = 0.19649 0.00347 ## JiggleSubtree 3 52 31 / 513 = 0.06043 0.00447 ## JiggleSegment 5 57 38 / 546 = 0.06960 0.00422 ## OptSubtree 0 0 0 / 127 = 0.00000 0.00000 ## OptSegment 0 1 1 / 258 = 0.00388 0.00136 ## OptAllSegments 0 0 0 / 117 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 126 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 106 = 0.00000 0.00000 ## TweakPhiSubtree 69 627 374 / 1658 = 0.22557 0.00489 ## TweakPhiSegment 58 696 414 / 1525 = 0.27148 0.00511 ## TweakPsiSubtree 2 511 334 / 1614 = 0.20694 0.00485 ## TweakPsiSegment 4 795 520 / 2105 = 0.24703 0.00624 ## TweakPsiPhiSubtree 171 549 334 / 1280 = 0.26094 0.00408 ## TweakPsiPhiSegment 159 506 289 / 1203 = 0.24023 0.00346 ## TweakHbondSubtree 25 346 215 / 1231 = 0.17465 0.00377 ## TweakHbondSegment 18 403 221 / 1249 = 0.17694 0.00398 ## TweakMultimer 399 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 62 267 173 / 606 = 0.28548 0.00134 ## FixOmega 4 0 0 / 115 = 0.00000 0.00000 ## Backrub 228 308 141 / 736 = 0.19158 0.00198 ## BigBackrub 186 134 75 / 666 = 0.11261 0.00231 ## OneRotamer 0 400 197 / 1958 = 0.10061 0.00459 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 176 = 0.01705 0.00067 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 251 = 0.00398 0.00010 ## CloseGap 0 20 6 / 284 = 0.02113 0.00575 ## HealGap 0 15 9 / 350 = 0.02571 0.00072 ## MoveGap 0 0 0 / 122 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 249 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 129 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 235 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 120 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 567 = 0.00000 0.00000 ## CrossOver 0 0 0 / 119 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 117 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 126 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L378 # TweakPsiPhi removed gap before (T0547)D401 # TweakPhi removed gap before (T0547)G252 # TweakPhi removed gap before (T0547)Y396 # TweakPhi removed gap before (T0547)N61 # TweakPsiSubtree removed gap before (T0547)V277 # TweakPsiPhi removed gap before (T0547)G159 # TweakPsiSubtree removed gap before (T0547)N123 # TweakPsiSubtree removed gap before (T0547)S202 # TweakPhi removed gap before (T0547)D40 # TweakPhi removed gap before (T0547)G544 # TweakPsiSubtree removed gap before (T0547)S492 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPsiSubtree removed gap before (T0547)A518 # TweakPhi removed gap before (T0547)I129 # TweakPhi removed gap before (T0547)N123 # TweakPsiPhi removed gap before (T0547)L557 # TweakPsiSubtree removed gap before (T0547)K260 # TweakPhi removed gap before (T0547)A416 # TweakPsiSubtree removed gap before (T0547)T413 # TweakPhi removed gap before (T0547)D360 # TweakPsiPhi removed gap before (T0547)L337 # TweakPhi removed gap before (T0547)L182 # TweakPsiPhi removed gap before (T0547)F51 # TweakPhi removed gap before (T0547)E148 # TweakPhi removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)K245 # TweakPsiSubtree removed gap before (T0547)L419 # TweakPhi removed gap before (T0547)Q309 # TweakPhi removed gap before (T0547)L446 # TweakPsiPhi removed gap before (T0547)F340 # TweakPhi removed gap before (T0547)R39 # TweakPsiSubtree removed gap before (T0547)P472 # TweakPhi removed gap before (T0547)S387 # TweakPsiPhi removed gap before (T0547)R70 # TweakPhi removed gap before (T0547)G64 # TweakPsiPhi removed gap before (T0547)T130 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F204 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Y90 # TweakPsiSubtree removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)N253 # TweakPsiSubtree removed gap before (T0547)G19 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L244 # TweakPhi removed gap before (T0547)K68 # TweakPhi removed gap before (T0547)I241 # TweakPhi removed gap before (T0547)K20 # TweakPhi removed gap before (T0547)Y440 # TweakPsiSubtree removed gap before (T0547)I23 # TweakPhi removed gap before (T0547)V547 # generation 221: best score out of 40: T0547.try1-opt2 202.34908 cost/residue, 744 clashes 0.12870 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 367 235 / 1202 = 0.19551 0.00345 ## JiggleSubtree 3 52 31 / 516 = 0.06008 0.00445 ## JiggleSegment 5 57 38 / 547 = 0.06947 0.00422 ## OptSubtree 0 0 0 / 127 = 0.00000 0.00000 ## OptSegment 0 1 1 / 258 = 0.00388 0.00136 ## OptAllSegments 0 0 0 / 117 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 126 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 106 = 0.00000 0.00000 ## TweakPhiSubtree 69 628 374 / 1671 = 0.22382 0.00485 ## TweakPhiSegment 59 701 417 / 1537 = 0.27131 0.00508 ## TweakPsiSubtree 2 511 334 / 1620 = 0.20617 0.00483 ## TweakPsiSegment 4 800 524 / 2116 = 0.24764 0.00624 ## TweakPsiPhiSubtree 175 551 334 / 1284 = 0.26012 0.00407 ## TweakPsiPhiSegment 160 507 289 / 1210 = 0.23884 0.00344 ## TweakHbondSubtree 25 348 216 / 1242 = 0.17391 0.00375 ## TweakHbondSegment 18 404 221 / 1255 = 0.17610 0.00396 ## TweakMultimer 403 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 62 270 175 / 609 = 0.28736 0.00137 ## FixOmega 4 0 0 / 117 = 0.00000 0.00000 ## Backrub 229 308 141 / 736 = 0.19158 0.00198 ## BigBackrub 188 135 75 / 670 = 0.11194 0.00230 ## OneRotamer 0 405 199 / 1965 = 0.10127 0.00458 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 176 = 0.01705 0.00067 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 252 = 0.00397 0.00010 ## CloseGap 0 20 6 / 284 = 0.02113 0.00575 ## HealGap 0 15 9 / 351 = 0.02564 0.00072 ## MoveGap 0 0 0 / 122 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 249 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 129 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 235 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 120 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 567 = 0.00000 0.00000 ## CrossOver 0 0 0 / 120 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 118 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 126 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)A536 # TweakPsiSubtree removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPsiSubtree removed gap before (T0547)P472 # TweakPsiSubtree removed gap before (T0547)D40 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPsiPhi removed gap before (T0547)W194 # TweakPsiPhi removed gap before (T0547)V331 # TweakPhi removed gap before (T0547)N253 # TweakPhi removed gap before (T0547)H500 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K135 # TweakPhi removed gap before (T0547)E164 # TweakPsiPhi removed gap before (T0547)F232 # TweakPsiSubtree removed gap before (T0547)I382 # TweakPsiPhi removed gap before (T0547)D168 # TweakPsiSubtree removed gap before (T0547)V277 # TweakPhi removed gap before (T0547)G192 # TweakPhi removed gap before (T0547)I254 # TweakPsiPhi removed gap before (T0547)Q89 # TweakPsiPhi removed gap before (T0547)L389 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPhi removed gap before (T0547)W9 # TweakPsiSubtree removed gap before (T0547)T390 # TweakPhi removed gap before (T0547)E37 # TweakPhi removed gap before (T0547)Y545 # TweakPsiSubtree removed gap before (T0547)D602 # TweakPhi removed gap before (T0547)K246 # TweakPsiPhi removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)K222 # TweakPhi removed gap before (T0547)Q458 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPhi removed gap before (T0547)K57 # TweakPsiPhi removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)D486 # TweakPsiPhi removed gap before (T0547)E172 # TweakPsiPhi removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)Y255 # TweakPsiPhi removed gap before (T0547)H527 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)D401 # TweakPsiSubtree removed gap before (T0547)I241 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)T559 # TweakPhi removed gap before (T0547)G395 # TweakPsiPhi removed gap before (T0547)T531 # TweakPsiPhi removed gap before (T0547)L258 # TweakPhi removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)R183 # generation 222: best score out of 40: T0547.try1-opt2 202.30998 cost/residue, 744 clashes 0.12875 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 370 237 / 1215 = 0.19506 0.00343 ## JiggleSubtree 3 52 31 / 517 = 0.05996 0.00444 ## JiggleSegment 5 57 38 / 548 = 0.06934 0.00421 ## OptSubtree 0 0 0 / 127 = 0.00000 0.00000 ## OptSegment 0 1 1 / 259 = 0.00386 0.00135 ## OptAllSegments 0 0 0 / 117 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 126 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 106 = 0.00000 0.00000 ## TweakPhiSubtree 70 629 374 / 1679 = 0.22275 0.00483 ## TweakPhiSegment 59 703 417 / 1544 = 0.27008 0.00505 ## TweakPsiSubtree 2 512 334 / 1629 = 0.20503 0.00480 ## TweakPsiSegment 4 802 526 / 2125 = 0.24753 0.00621 ## TweakPsiPhiSubtree 178 555 337 / 1292 = 0.26084 0.00409 ## TweakPsiPhiSegment 160 512 291 / 1219 = 0.23872 0.00343 ## TweakHbondSubtree 25 348 216 / 1245 = 0.17349 0.00374 ## TweakHbondSegment 18 405 222 / 1259 = 0.17633 0.00396 ## TweakMultimer 404 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 64 272 175 / 615 = 0.28455 0.00135 ## FixOmega 4 0 0 / 117 = 0.00000 0.00000 ## Backrub 230 308 141 / 737 = 0.19132 0.00197 ## BigBackrub 190 136 75 / 674 = 0.11128 0.00228 ## OneRotamer 0 407 200 / 1976 = 0.10121 0.00456 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 176 = 0.01705 0.00067 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 253 = 0.00395 0.00010 ## CloseGap 0 20 6 / 284 = 0.02113 0.00575 ## HealGap 0 15 9 / 351 = 0.02564 0.00072 ## MoveGap 0 0 0 / 122 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 250 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 129 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 235 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 120 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 569 = 0.00000 0.00000 ## CrossOver 0 0 0 / 120 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 118 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 127 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)T534 # TweakPsiPhi removed gap before (T0547)E285 # TweakPhi removed gap before (T0547)A330 # TweakPhi removed gap before (T0547)G544 # TweakPhi removed gap before (T0547)L430 # TweakPsiPhi removed gap before (T0547)K415 # TweakPsiSubtree removed gap before (T0547)P496 # TweakPsiPhi removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)K102 # TweakPsiSubtree removed gap before (T0547)A345 # TweakPhi removed gap before (T0547)H231 # TweakPsiSubtree removed gap before (T0547)E164 # TweakPsiSubtree removed gap before (T0547)T559 # TweakPsiPhi removed gap before (T0547)S236 # TweakPhi removed gap before (T0547)L108 # TweakPhi removed gap before (T0547)E505 # TweakPsiSubtree removed gap before (T0547)Q520 # TweakPhi removed gap before (T0547)K99 # TweakPsiSubtree removed gap before (T0547)F144 # TweakPsiPhi removed gap before (T0547)L523 # TweakPsiSubtree removed gap before (T0547)N585 # TweakPsiSubtree removed gap before (T0547)G45 # TweakPsiPhi removed gap before (T0547)F144 # TweakPhi removed gap before (T0547)S208 # TweakPsiPhi removed gap before (T0547)Q58 # TweakPsiPhi removed gap before (T0547)N603 # TweakPsiPhi removed gap before (T0547)E162 # TweakPsiSubtree removed gap before (T0547)Y295 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPhi removed gap before (T0547)I302 # TweakPsiSubtree removed gap before (T0547)G133 # TweakPsiPhi removed gap before (T0547)S445 # TweakPsiSubtree removed gap before (T0547)N105 # TweakPhi removed gap before (T0547)F93 # TweakPhi removed gap before (T0547)R474 # TweakPsiPhi removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)K175 # TweakPsiSubtree removed gap before (T0547)N284 # TweakPhi removed gap before (T0547)S608 # TweakPhi removed gap before (T0547)D364 # generation 223: best score out of 40: T0547.try1-opt2 202.30222 cost/residue, 744 clashes 0.12878 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 374 239 / 1225 = 0.19510 0.00341 ## JiggleSubtree 3 52 31 / 519 = 0.05973 0.00442 ## JiggleSegment 5 57 38 / 548 = 0.06934 0.00421 ## OptSubtree 0 0 0 / 127 = 0.00000 0.00000 ## OptSegment 0 1 1 / 259 = 0.00386 0.00135 ## OptAllSegments 0 0 0 / 117 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 126 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 106 = 0.00000 0.00000 ## TweakPhiSubtree 71 634 377 / 1687 = 0.22347 0.00482 ## TweakPhiSegment 59 707 420 / 1552 = 0.27062 0.00505 ## TweakPsiSubtree 2 512 334 / 1633 = 0.20453 0.00479 ## TweakPsiSegment 4 806 530 / 2138 = 0.24790 0.00619 ## TweakPsiPhiSubtree 180 560 340 / 1302 = 0.26114 0.00407 ## TweakPsiPhiSegment 161 513 292 / 1223 = 0.23876 0.00342 ## TweakHbondSubtree 25 350 216 / 1252 = 0.17252 0.00372 ## TweakHbondSegment 18 407 223 / 1264 = 0.17642 0.00395 ## TweakMultimer 405 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 64 274 176 / 618 = 0.28479 0.00135 ## FixOmega 4 0 0 / 117 = 0.00000 0.00000 ## Backrub 230 308 141 / 738 = 0.19106 0.00197 ## BigBackrub 190 136 75 / 680 = 0.11029 0.00226 ## OneRotamer 0 408 201 / 1989 = 0.10106 0.00453 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 176 = 0.01705 0.00067 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 253 = 0.00395 0.00010 ## CloseGap 0 20 6 / 284 = 0.02113 0.00575 ## HealGap 0 15 9 / 352 = 0.02557 0.00072 ## MoveGap 0 0 0 / 123 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 251 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 129 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 235 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 121 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 570 = 0.00000 0.00000 ## CrossOver 0 0 0 / 120 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 118 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 128 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)L339 # TweakPsiPhi removed gap before (T0547)L441 # TweakPhi removed gap before (T0547)I417 # TweakPsiPhi removed gap before (T0547)M149 # TweakPsiPhi removed gap before (T0547)K76 # TweakPsiPhi removed gap before (T0547)V436 # TweakPsiSubtree removed gap before (T0547)A147 # TweakPhi removed gap before (T0547)L275 # TweakPsiPhi removed gap before (T0547)A327 # TweakPhi removed gap before (T0547)I23 # TweakPsiPhi removed gap before (T0547)I350 # TweakPsiPhi removed gap before (T0547)R577 # TweakPsiSubtree removed gap before (T0547)K102 # TweakPsiSubtree removed gap before (T0547)K135 # TweakPsiSubtree removed gap before (T0547)A146 # TweakPhi removed gap before (T0547)G205 # TweakPhi removed gap before (T0547)L583 # TweakPsiPhi removed gap before (T0547)F498 # TweakPhi removed gap before (T0547)E343 # TweakPhi removed gap before (T0547)F392 # TweakPhi removed gap before (T0547)I382 # TweakPsiPhi removed gap before (T0547)D7 # TweakPsiPhi removed gap before (T0547)V191 # TweakPhi removed gap before (T0547)Q437 # TweakPhi removed gap before (T0547)I254 # TweakPsiPhi removed gap before (T0547)V584 # TweakPsiPhi removed gap before (T0547)V336 # TweakPsiSubtree removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)E406 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)W9 # TweakPhi removed gap before (T0547)N132 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPsiPhi removed gap before (T0547)L54 # TweakPhi removed gap before (T0547)N61 # TweakPsiSubtree removed gap before (T0547)H151 # generation 224: best score out of 40: T0547.try1-opt2 202.19623 cost/residue, 742 clashes 0.12823 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 374 239 / 1233 = 0.19384 0.00339 ## JiggleSubtree 3 53 32 / 521 = 0.06142 0.00446 ## JiggleSegment 5 57 38 / 548 = 0.06934 0.00421 ## OptSubtree 0 0 0 / 127 = 0.00000 0.00000 ## OptSegment 0 1 1 / 259 = 0.00386 0.00135 ## OptAllSegments 0 0 0 / 118 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 126 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 106 = 0.00000 0.00000 ## TweakPhiSubtree 71 635 378 / 1694 = 0.22314 0.00480 ## TweakPhiSegment 59 709 420 / 1557 = 0.26975 0.00503 ## TweakPsiSubtree 2 513 335 / 1636 = 0.20477 0.00479 ## TweakPsiSegment 4 811 534 / 2151 = 0.24826 0.00622 ## TweakPsiPhiSubtree 184 563 342 / 1310 = 0.26107 0.00415 ## TweakPsiPhiSegment 162 516 293 / 1229 = 0.23841 0.00344 ## TweakHbondSubtree 25 355 217 / 1260 = 0.17222 0.00371 ## TweakHbondSegment 19 409 223 / 1273 = 0.17518 0.00392 ## TweakMultimer 409 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 64 278 180 / 624 = 0.28846 0.00140 ## FixOmega 4 0 0 / 117 = 0.00000 0.00000 ## Backrub 231 308 141 / 739 = 0.19080 0.00197 ## BigBackrub 190 136 75 / 683 = 0.10981 0.00225 ## OneRotamer 0 411 202 / 1997 = 0.10115 0.00452 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 178 = 0.01685 0.00066 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 255 = 0.00392 0.00010 ## CloseGap 0 20 6 / 284 = 0.02113 0.00575 ## HealGap 0 15 9 / 355 = 0.02535 0.00071 ## MoveGap 0 0 0 / 123 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 252 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 129 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 237 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 121 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 571 = 0.00000 0.00000 ## CrossOver 0 0 0 / 120 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 25 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 118 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 128 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)P178 # TweakPhi removed gap before (T0547)N61 # TweakPsiSubtree removed gap before (T0547)N305 # TweakPsiPhi removed gap before (T0547)V299 # TweakPsiPhi removed gap before (T0547)S280 # TweakPsiPhi removed gap before (T0547)L394 # TweakPhi removed gap before (T0547)F324 # TweakPsiPhi removed gap before (T0547)I254 # TweakPhi removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)Q400 # TweakPsiPhi removed gap before (T0547)T239 # TweakPhi removed gap before (T0547)W9 # TweakPhi removed gap before (T0547)T239 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPsiSubtree removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)E338 # TweakPsiPhi removed gap before (T0547)E343 # TweakPsiPhi removed gap before (T0547)L116 # TweakPsiPhi removed gap before (T0547)N575 # TweakPsiPhi removed gap before (T0547)D380 # TweakPsiPhi removed gap before (T0547)L244 # TweakPsiSubtree removed gap before (T0547)V336 # TweakPsiSubtree removed gap before (T0547)L182 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPhi removed gap before (T0547)H527 # TweakPhi removed gap before (T0547)N18 # TweakPsiPhi removed gap before (T0547)L139 # TweakPhi removed gap before (T0547)N289 # TweakPsiPhi removed gap before (T0547)A170 # TweakPsiPhi removed gap before (T0547)L339 # TweakPsiSubtree removed gap before (T0547)E138 # TweakPsiSubtree removed gap before (T0547)V584 # TweakPsiPhi removed gap before (T0547)V87 # TweakPsiSubtree removed gap before (T0547)S321 # TweakPsiPhi removed gap before (T0547)V584 # TweakPhi removed gap before (T0547)I550 # TweakPsiSubtree removed gap before (T0547)L598 # TweakPhi removed gap before (T0547)L358 # TweakPhi removed gap before (T0547)E240 # TweakPsiPhi removed gap before (T0547)K352 # TweakPhi removed gap before (T0547)K353 # TweakPsiSubtree removed gap before (T0547)K267 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)E26 # generation 225: best score out of 40: T0547.try1-opt2 202.19623 cost/residue, 742 clashes 0.12823 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 375 240 / 1240 = 0.19355 0.00337 ## JiggleSubtree 3 53 32 / 525 = 0.06095 0.00443 ## JiggleSegment 5 57 38 / 548 = 0.06934 0.00421 ## OptSubtree 1 0 0 / 127 = 0.00000 0.00000 ## OptSegment 0 1 1 / 259 = 0.00386 0.00135 ## OptAllSegments 0 0 0 / 118 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 126 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 106 = 0.00000 0.00000 ## TweakPhiSubtree 71 636 378 / 1702 = 0.22209 0.00478 ## TweakPhiSegment 59 712 420 / 1562 = 0.26889 0.00502 ## TweakPsiSubtree 2 513 335 / 1641 = 0.20414 0.00477 ## TweakPsiSegment 4 814 538 / 2163 = 0.24873 0.00622 ## TweakPsiPhiSubtree 186 568 346 / 1323 = 0.26153 0.00415 ## TweakPsiPhiSegment 163 518 294 / 1234 = 0.23825 0.00343 ## TweakHbondSubtree 25 357 217 / 1267 = 0.17127 0.00369 ## TweakHbondSegment 19 409 223 / 1275 = 0.17490 0.00392 ## TweakMultimer 410 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 65 283 184 / 633 = 0.29068 0.00140 ## FixOmega 4 0 0 / 117 = 0.00000 0.00000 ## Backrub 231 308 141 / 741 = 0.19028 0.00196 ## BigBackrub 190 137 76 / 693 = 0.10967 0.00226 ## OneRotamer 0 413 205 / 2005 = 0.10224 0.00452 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 178 = 0.01685 0.00066 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 255 = 0.00392 0.00010 ## CloseGap 0 20 6 / 284 = 0.02113 0.00575 ## HealGap 0 15 9 / 355 = 0.02535 0.00071 ## MoveGap 0 0 0 / 123 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 253 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 129 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 238 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 121 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 571 = 0.00000 0.00000 ## CrossOver 0 0 0 / 121 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 25 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 118 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 128 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)G199 # TweakPsiPhi removed gap before (T0547)L499 # TweakPsiPhi removed gap before (T0547)I269 # TweakPsiPhi removed gap before (T0547)D168 # TweakPhi removed gap before (T0547)F204 # TweakPsiPhi removed gap before (T0547)N96 # TweakPhi removed gap before (T0547)G544 # TweakPsiSubtree removed gap before (T0547)F340 # TweakPsiPhi removed gap before (T0547)E488 # TweakPhi removed gap before (T0547)T559 # TweakPhi removed gap before (T0547)K196 # TweakPsiPhi removed gap before (T0547)I15 # TweakPhi removed gap before (T0547)F510 # TweakPhi removed gap before (T0547)L429 # TweakPsiPhi removed gap before (T0547)S372 # TweakPsiSubtree removed gap before (T0547)F324 # TweakPsiPhi removed gap before (T0547)W454 # TweakPsiSubtree removed gap before (T0547)E250 # TweakPsiPhi removed gap before (T0547)K219 # TweakPsiPhi removed gap before (T0547)A307 # TweakPsiSubtree removed gap before (T0547)P356 # TweakPsiPhi removed gap before (T0547)V397 # TweakPhi removed gap before (T0547)Q56 # TweakPhi removed gap before (T0547)A326 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPsiPhi removed gap before (T0547)V87 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V94 # TweakPhi removed gap before (T0547)L511 # TweakPsiPhi removed gap before (T0547)S485 # TweakPsiPhi removed gap before (T0547)F318 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I31 # TweakPsiSubtree removed gap before (T0547)N141 # TweakPsiSubtree removed gap before (T0547)E213 # TweakPsiSubtree removed gap before (T0547)F301 # TweakPhi removed gap before (T0547)A127 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L258 # TweakPsiSubtree removed gap before (T0547)I333 # TweakPsiSubtree removed gap before (T0547)E535 # TweakPsiPhi removed gap before (T0547)Y295 # TweakPhi removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)N152 # TweakPsiPhi removed gap before (T0547)V277 # generation 226: best score out of 40: T0547.try1-opt2 202.15659 cost/residue, 739 clashes 0.12823 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 376 241 / 1244 = 0.19373 0.00341 ## JiggleSubtree 3 53 32 / 528 = 0.06061 0.00440 ## JiggleSegment 5 57 38 / 548 = 0.06934 0.00421 ## OptSubtree 1 0 0 / 127 = 0.00000 0.00000 ## OptSegment 0 1 1 / 259 = 0.00386 0.00135 ## OptAllSegments 0 0 0 / 118 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 127 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 106 = 0.00000 0.00000 ## TweakPhiSubtree 71 637 378 / 1708 = 0.22131 0.00477 ## TweakPhiSegment 59 715 420 / 1569 = 0.26769 0.00499 ## TweakPsiSubtree 2 513 335 / 1644 = 0.20377 0.00476 ## TweakPsiSegment 4 818 540 / 2172 = 0.24862 0.00620 ## TweakPsiPhiSubtree 187 574 349 / 1337 = 0.26103 0.00417 ## TweakPsiPhiSegment 164 523 295 / 1243 = 0.23733 0.00341 ## TweakHbondSubtree 26 357 218 / 1271 = 0.17152 0.00368 ## TweakHbondSegment 19 412 225 / 1283 = 0.17537 0.00391 ## TweakMultimer 413 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 67 285 185 / 640 = 0.28906 0.00139 ## FixOmega 4 0 0 / 117 = 0.00000 0.00000 ## Backrub 233 309 141 / 744 = 0.18952 0.00196 ## BigBackrub 191 138 76 / 698 = 0.10888 0.00224 ## OneRotamer 0 413 205 / 2016 = 0.10169 0.00449 ## ClashingRotamer 2 3 1 / 196 = 0.00510 0.00067 ## ClusteredRotamer 21 5 3 / 179 = 0.01676 0.00066 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 256 = 0.00391 0.00010 ## CloseGap 0 20 6 / 284 = 0.02113 0.00575 ## HealGap 0 15 9 / 355 = 0.02535 0.00071 ## MoveGap 0 0 0 / 123 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 255 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 129 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 238 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 121 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 573 = 0.00000 0.00000 ## CrossOver 0 0 0 / 121 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 25 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 118 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 128 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)Q424 # TweakPsiPhi removed gap before (T0547)F510 # TweakPhi removed gap before (T0547)E164 # TweakPsiSubtree removed gap before (T0547)T239 # TweakPsiPhi removed gap before (T0547)L38 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)P84 # TweakPhi removed gap before (T0547)Q309 # TweakPsiPhi removed gap before (T0547)N305 # TweakPsiPhi removed gap before (T0547)A327 # TweakPhi removed gap before (T0547)K283 # TweakPhi removed gap before (T0547)R39 # TweakPhi removed gap before (T0547)E320 # TweakPsiPhi removed gap before (T0547)E346 # TweakPhi removed gap before (T0547)F282 # TweakPsiPhi removed gap before (T0547)N132 # TweakPsiSubtree removed gap before (T0547)K113 # TweakPsiPhi removed gap before (T0547)L468 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)R183 # TweakPsiSubtree removed gap before (T0547)A307 # TweakPhi removed gap before (T0547)K76 # TweakPsiPhi removed gap before (T0547)Y605 # TweakPsiSubtree removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)K219 # TweakPsiPhi removed gap before (T0547)L258 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A268 # TweakPsiSubtree removed gap before (T0547)Q437 # TweakPsiPhi removed gap before (T0547)N65 # TweakPsiPhi removed gap before (T0547)N141 # TweakPhi removed gap before (T0547)V547 # TweakPsiPhi removed gap before (T0547)D566 # TweakPsiSubtree removed gap before (T0547)G111 # TweakPhi removed gap before (T0547)L497 # TweakPsiSubtree removed gap before (T0547)Q309 # TweakPhi removed gap before (T0547)L399 # TweakPsiSubtree removed gap before (T0547)P178 # TweakPsiSubtree removed gap before (T0547)L155 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPsiPhi removed gap before (T0547)K352 # TweakPhi removed gap before (T0547)K95 # TweakPhi removed gap before (T0547)S492 # TweakPsiSubtree removed gap before (T0547)K20 # TweakPsiPhi removed gap before (T0547)G74 # generation 227: best score out of 40: T0547.try1-opt2 202.12912 cost/residue, 740 clashes 0.12827 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 380 245 / 1256 = 0.19506 0.00345 ## JiggleSubtree 3 53 32 / 535 = 0.05981 0.00434 ## JiggleSegment 5 57 38 / 548 = 0.06934 0.00421 ## OptSubtree 1 0 0 / 128 = 0.00000 0.00000 ## OptSegment 0 1 1 / 259 = 0.00386 0.00135 ## OptAllSegments 0 0 0 / 118 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 127 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 106 = 0.00000 0.00000 ## TweakPhiSubtree 71 637 378 / 1715 = 0.22041 0.00475 ## TweakPhiSegment 59 716 420 / 1574 = 0.26684 0.00498 ## TweakPsiSubtree 2 518 340 / 1652 = 0.20581 0.00477 ## TweakPsiSegment 4 822 543 / 2183 = 0.24874 0.00619 ## TweakPsiPhiSubtree 190 581 354 / 1349 = 0.26242 0.00416 ## TweakPsiPhiSegment 164 524 296 / 1246 = 0.23756 0.00346 ## TweakHbondSubtree 26 357 218 / 1276 = 0.17085 0.00366 ## TweakHbondSegment 19 415 226 / 1288 = 0.17547 0.00390 ## TweakMultimer 417 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 67 285 185 / 643 = 0.28771 0.00139 ## FixOmega 4 0 0 / 117 = 0.00000 0.00000 ## Backrub 233 309 141 / 745 = 0.18926 0.00195 ## BigBackrub 194 139 77 / 700 = 0.11000 0.00227 ## OneRotamer 0 414 206 / 2023 = 0.10183 0.00448 ## ClashingRotamer 2 3 1 / 197 = 0.00508 0.00066 ## ClusteredRotamer 21 5 3 / 179 = 0.01676 0.00066 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 256 = 0.00391 0.00010 ## CloseGap 0 21 6 / 285 = 0.02105 0.00573 ## HealGap 0 15 9 / 356 = 0.02528 0.00071 ## MoveGap 0 0 0 / 123 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 256 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 129 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 238 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 121 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 575 = 0.00000 0.00000 ## CrossOver 0 0 0 / 122 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 27 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 120 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 128 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)E488 # TweakPsiPhi removed gap before (T0547)I382 # TweakPsiPhi removed gap before (T0547)Y491 # TweakPsiSubtree removed gap before (T0547)H568 # TweakPsiPhi removed gap before (T0547)S579 # TweakPsiPhi removed gap before (T0547)D466 # TweakPhi removed gap before (T0547)N580 # TweakPhi removed gap before (T0547)S555 # TweakPsiSubtree removed gap before (T0547)I306 # TweakPhi removed gap before (T0547)E376 # TweakPsiSubtree removed gap before (T0547)I180 # TweakPhi removed gap before (T0547)L49 # TweakPhi removed gap before (T0547)I269 # TweakPsiPhi removed gap before (T0547)E225 # TweakPsiSubtree removed gap before (T0547)N152 # TweakPsiPhi removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)E278 # TweakPhi removed gap before (T0547)Y122 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L499 # TweakPhi removed gap before (T0547)Y25 # TweakPsiPhi removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)T531 # TweakPsiPhi removed gap before (T0547)I193 # TweakPsiPhi removed gap before (T0547)K219 # TweakPsiSubtree removed gap before (T0547)N67 # TweakPsiPhi removed gap before (T0547)I573 # TweakPhi removed gap before (T0547)V215 # TweakPsiPhi removed gap before (T0547)Y366 # TweakPsiSubtree removed gap before (T0547)A405 # TweakPsiSubtree removed gap before (T0547)V397 # TweakPsiPhi removed gap before (T0547)L118 # TweakPhi removed gap before (T0547)L362 # TweakPsiPhi removed gap before (T0547)G512 # TweakPsiPhi removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)Y279 # TweakPsiPhi removed gap before (T0547)L248 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)I167 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPsiPhi removed gap before (T0547)I388 # TweakPsiSubtree removed gap before (T0547)E278 # TweakPsiPhi removed gap before (T0547)F599 # TweakPsiSubtree removed gap before (T0547)K357 # TweakPsiPhi removed gap before (T0547)E535 # TweakPsiPhi removed gap before (T0547)F66 # TweakPsiPhi removed gap before (T0547)F204 # TweakPhi removed gap before (T0547)L365 # TweakPsiPhi removed gap before (T0547)N124 # TweakPsiPhi removed gap before (T0547)L523 # TweakPsiPhi removed gap before (T0547)L100 # TweakPsiSubtree removed gap before (T0547)I140 # TweakPhi removed gap before (T0547)D469 # generation 228: best score out of 40: T0547.try1-opt2 202.04898 cost/residue, 737 clashes 0.12774 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 385 250 / 1267 = 0.19732 0.00345 ## JiggleSubtree 3 53 32 / 536 = 0.05970 0.00434 ## JiggleSegment 5 57 38 / 548 = 0.06934 0.00421 ## OptSubtree 1 0 0 / 128 = 0.00000 0.00000 ## OptSegment 0 1 1 / 259 = 0.00386 0.00135 ## OptAllSegments 0 0 0 / 118 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 127 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 106 = 0.00000 0.00000 ## TweakPhiSubtree 71 638 379 / 1721 = 0.22022 0.00473 ## TweakPhiSegment 59 717 422 / 1579 = 0.26726 0.00499 ## TweakPsiSubtree 2 520 341 / 1655 = 0.20604 0.00482 ## TweakPsiSegment 4 827 550 / 2197 = 0.25034 0.00622 ## TweakPsiPhiSubtree 193 588 358 / 1364 = 0.26246 0.00417 ## TweakPsiPhiSegment 166 527 299 / 1257 = 0.23787 0.00345 ## TweakHbondSubtree 26 357 218 / 1281 = 0.17018 0.00365 ## TweakHbondSegment 19 416 227 / 1292 = 0.17570 0.00389 ## TweakMultimer 421 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 67 287 189 / 650 = 0.29077 0.00139 ## FixOmega 4 0 0 / 117 = 0.00000 0.00000 ## Backrub 233 310 142 / 746 = 0.19035 0.00197 ## BigBackrub 196 139 78 / 702 = 0.11111 0.00226 ## OneRotamer 0 415 207 / 2029 = 0.10202 0.00448 ## ClashingRotamer 2 3 1 / 197 = 0.00508 0.00066 ## ClusteredRotamer 21 5 3 / 180 = 0.01667 0.00066 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 258 = 0.00388 0.00010 ## CloseGap 0 21 6 / 285 = 0.02105 0.00573 ## HealGap 0 15 9 / 356 = 0.02528 0.00071 ## MoveGap 0 0 0 / 124 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 256 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 129 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 241 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 122 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 575 = 0.00000 0.00000 ## CrossOver 0 0 0 / 122 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 120 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 128 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L399 # TweakPhi removed gap before (T0547)A569 # TweakPsiPhi removed gap before (T0547)G92 # TweakPhi removed gap before (T0547)E361 # TweakPhi removed gap before (T0547)F530 # TweakPsiSubtree removed gap before (T0547)L391 # TweakPsiPhi removed gap before (T0547)I537 # TweakPsiSubtree removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)N65 # TweakPhi removed gap before (T0547)S608 # TweakPsiPhi removed gap before (T0547)F232 # TweakPsiSubtree removed gap before (T0547)D383 # TweakPsiSubtree removed gap before (T0547)I382 # TweakPsiSubtree removed gap before (T0547)K264 # Can't patch backbone between (T0547)E505 and (T0547)K506 because distance= 3.706 not near ideal 3.804 # TweakPsiPhi removed gap before (T0547)D383 # TweakPsiPhi removed gap before (T0547)F324 # TweakPsiSubtree removed gap before (T0547)L116 # TweakPsiPhi removed gap before (T0547)A374 # TweakPhi removed gap before (T0547)N61 # TweakPhi removed gap before (T0547)I570 # TweakPsiPhi removed gap before (T0547)D469 # TweakPsiSubtree removed gap before (T0547)Q400 # TweakPsiSubtree removed gap before (T0547)F282 # TweakPsiPhi removed gap before (T0547)R467 # TweakPsiSubtree removed gap before (T0547)L598 # TweakPhi removed gap before (T0547)V21 # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPsiPhi removed gap before (T0547)K28 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)V547 # TweakPsiPhi removed gap before (T0547)E285 # TweakPsiPhi removed gap before (T0547)G322 # TweakPsiSubtree removed gap before (T0547)E164 # TweakPsiPhi removed gap before (T0547)I592 # TweakPsiSubtree removed gap before (T0547)T390 # TweakPhi removed gap before (T0547)Y90 # TweakPsiSubtree removed gap before (T0547)D7 # TweakPhi removed gap before (T0547)K607 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPhi removed gap before (T0547)K27 # TweakPsiSubtree removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPsiSubtree removed gap before (T0547)T390 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPsiPhi removed gap before (T0547)L224 # generation 229: best score out of 40: T0547.try1-opt2 202.03535 cost/residue, 737 clashes 0.12774 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 387 253 / 1278 = 0.19797 0.00346 ## JiggleSubtree 3 53 32 / 538 = 0.05948 0.00432 ## JiggleSegment 5 57 38 / 548 = 0.06934 0.00421 ## OptSubtree 1 0 0 / 128 = 0.00000 0.00000 ## OptSegment 0 1 1 / 260 = 0.00385 0.00135 ## OptAllSegments 0 0 0 / 119 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 128 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 106 = 0.00000 0.00000 ## TweakPhiSubtree 71 639 379 / 1727 = 0.21946 0.00471 ## TweakPhiSegment 59 721 424 / 1587 = 0.26717 0.00497 ## TweakPsiSubtree 2 523 343 / 1664 = 0.20613 0.00480 ## TweakPsiSegment 4 833 555 / 2211 = 0.25102 0.00620 ## TweakPsiPhiSubtree 195 592 360 / 1377 = 0.26144 0.00416 ## TweakPsiPhiSegment 166 531 302 / 1263 = 0.23911 0.00349 ## TweakHbondSubtree 26 357 218 / 1282 = 0.17005 0.00365 ## TweakHbondSegment 19 417 227 / 1296 = 0.17515 0.00388 ## TweakMultimer 423 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 68 289 189 / 654 = 0.28899 0.00138 ## FixOmega 4 0 0 / 117 = 0.00000 0.00000 ## Backrub 233 311 143 / 748 = 0.19118 0.00198 ## BigBackrub 197 139 78 / 705 = 0.11064 0.00225 ## OneRotamer 0 417 207 / 2036 = 0.10167 0.00446 ## ClashingRotamer 2 3 1 / 197 = 0.00508 0.00066 ## ClusteredRotamer 21 5 3 / 180 = 0.01667 0.00066 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 259 = 0.00386 0.00010 ## CloseGap 0 21 6 / 285 = 0.02105 0.00573 ## HealGap 0 15 9 / 357 = 0.02521 0.00071 ## MoveGap 0 0 0 / 124 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 256 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 129 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 241 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 122 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 578 = 0.00000 0.00000 ## CrossOver 0 0 0 / 123 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 120 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 129 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)T228 # TweakPhi removed gap before (T0547)L266 # TweakPsiPhi removed gap before (T0547)D3 # TweakPhi removed gap before (T0547)D312 # TweakPsiPhi removed gap before (T0547)K415 # TweakPsiSubtree removed gap before (T0547)E386 # TweakPsiSubtree removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)R467 # TweakPsiPhi removed gap before (T0547)D494 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N216 # TweakPsiSubtree removed gap before (T0547)G133 # TweakPhi removed gap before (T0547)I319 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)E72 # TweakPsiSubtree removed gap before (T0547)P356 # TweakPsiPhi removed gap before (T0547)I489 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPhi removed gap before (T0547)G594 # TweakPsiSubtree removed gap before (T0547)P84 # TweakPsiPhi removed gap before (T0547)Q433 # TweakPhi removed gap before (T0547)V516 # TweakPsiPhi removed gap before (T0547)F453 # TweakPhi removed gap before (T0547)Q433 # TweakPsiSubtree removed gap before (T0547)I333 # TweakPsiPhi removed gap before (T0547)S475 # TweakPhi removed gap before (T0547)R183 # TweakPsiSubtree removed gap before (T0547)S202 # TweakPsiPhi removed gap before (T0547)Y83 # TweakPsiPhi removed gap before (T0547)K415 # TweakPsiPhi removed gap before (T0547)I412 # TweakPsiPhi removed gap before (T0547)K267 # TweakPhi removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)L100 # TweakPhi removed gap before (T0547)L155 # TweakPsiSubtree removed gap before (T0547)H527 # TweakPsiSubtree removed gap before (T0547)L465 # TweakPhi removed gap before (T0547)S208 # TweakPsiPhi removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)Q520 # TweakPsiSubtree removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)N152 # TweakPsiSubtree removed gap before (T0547)D380 # generation 230: best score out of 40: T0547.try1-opt2 202.00414 cost/residue, 735 clashes 0.12774 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 388 255 / 1289 = 0.19783 0.00344 ## JiggleSubtree 3 53 32 / 538 = 0.05948 0.00432 ## JiggleSegment 5 57 38 / 549 = 0.06922 0.00420 ## OptSubtree 1 0 0 / 129 = 0.00000 0.00000 ## OptSegment 0 1 1 / 260 = 0.00385 0.00135 ## OptAllSegments 0 0 0 / 120 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 128 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 107 = 0.00000 0.00000 ## TweakPhiSubtree 71 640 379 / 1732 = 0.21882 0.00470 ## TweakPhiSegment 59 724 427 / 1594 = 0.26788 0.00497 ## TweakPsiSubtree 2 525 343 / 1671 = 0.20527 0.00478 ## TweakPsiSegment 4 839 560 / 2220 = 0.25225 0.00623 ## TweakPsiPhiSubtree 198 592 363 / 1384 = 0.26228 0.00415 ## TweakPsiPhiSegment 167 534 304 / 1271 = 0.23918 0.00347 ## TweakHbondSubtree 26 358 218 / 1287 = 0.16939 0.00363 ## TweakHbondSegment 19 418 228 / 1301 = 0.17525 0.00388 ## TweakMultimer 424 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 69 293 191 / 662 = 0.28852 0.00139 ## FixOmega 4 0 0 / 117 = 0.00000 0.00000 ## Backrub 234 315 145 / 753 = 0.19256 0.00197 ## BigBackrub 199 139 78 / 710 = 0.10986 0.00224 ## OneRotamer 0 418 208 / 2041 = 0.10191 0.00447 ## ClashingRotamer 2 3 1 / 197 = 0.00508 0.00066 ## ClusteredRotamer 21 5 3 / 182 = 0.01648 0.00065 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 260 = 0.00385 0.00010 ## CloseGap 0 21 6 / 285 = 0.02105 0.00573 ## HealGap 0 15 9 / 357 = 0.02521 0.00071 ## MoveGap 0 0 0 / 124 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 257 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 129 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 241 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 122 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 580 = 0.00000 0.00000 ## CrossOver 0 0 0 / 125 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 120 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 130 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)R39 # TweakPsiPhi removed gap before (T0547)L339 # TweakPsiSubtree removed gap before (T0547)L97 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPhi removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)I551 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPsiPhi removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)S445 # TweakPsiPhi removed gap before (T0547)T228 # TweakPhi removed gap before (T0547)E561 # TweakPsiSubtree removed gap before (T0547)D466 # TweakPsiSubtree removed gap before (T0547)E164 # TweakPsiPhi removed gap before (T0547)K353 # TweakPsiSubtree removed gap before (T0547)H568 # TweakPsiSubtree removed gap before (T0547)I478 # TweakPsiPhi removed gap before (T0547)G77 # TweakPsiSubtree removed gap before (T0547)F144 # TweakPsiSubtree removed gap before (T0547)E546 # TweakPhi removed gap before (T0547)E162 # TweakPsiPhi removed gap before (T0547)A146 # TweakPhi removed gap before (T0547)N11 # TweakPsiPhi removed gap before (T0547)L38 # TweakPsiSubtree removed gap before (T0547)K86 # TweakPsiSubtree removed gap before (T0547)Y440 # TweakPsiSubtree removed gap before (T0547)N603 # TweakPsiPhi removed gap before (T0547)L511 # TweakPsiSubtree removed gap before (T0547)K76 # TweakPsiSubtree removed gap before (T0547)L163 # TweakPsiPhi removed gap before (T0547)G235 # TweakPsiSubtree removed gap before (T0547)R259 # TweakPsiSubtree removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)Q424 # TweakPsiSubtree removed gap before (T0547)Q400 # TweakPsiPhi removed gap before (T0547)T534 # TweakPsiSubtree removed gap before (T0547)A214 # TweakPsiPhi removed gap before (T0547)F66 # TweakPhi removed gap before (T0547)Q437 # generation 231: best score out of 40: T0547.try1-opt2 201.99805 cost/residue, 737 clashes 0.12774 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 389 256 / 1301 = 0.19677 0.00340 ## JiggleSubtree 3 53 32 / 542 = 0.05904 0.00429 ## JiggleSegment 5 57 38 / 549 = 0.06922 0.00420 ## OptSubtree 1 0 0 / 129 = 0.00000 0.00000 ## OptSegment 0 1 1 / 260 = 0.00385 0.00135 ## OptAllSegments 0 0 0 / 120 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 128 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 107 = 0.00000 0.00000 ## TweakPhiSubtree 71 641 379 / 1737 = 0.21819 0.00469 ## TweakPhiSegment 60 724 427 / 1595 = 0.26771 0.00497 ## TweakPsiSubtree 2 529 345 / 1682 = 0.20511 0.00477 ## TweakPsiSegment 4 845 564 / 2237 = 0.25212 0.00621 ## TweakPsiPhiSubtree 198 597 366 / 1392 = 0.26293 0.00415 ## TweakPsiPhiSegment 167 536 306 / 1279 = 0.23925 0.00347 ## TweakHbondSubtree 26 358 218 / 1291 = 0.16886 0.00362 ## TweakHbondSegment 19 418 228 / 1305 = 0.17471 0.00386 ## TweakMultimer 425 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 69 295 193 / 668 = 0.28892 0.00139 ## FixOmega 4 0 0 / 117 = 0.00000 0.00000 ## Backrub 234 316 146 / 757 = 0.19287 0.00197 ## BigBackrub 199 139 78 / 712 = 0.10955 0.00223 ## OneRotamer 0 420 208 / 2052 = 0.10136 0.00444 ## ClashingRotamer 2 3 1 / 197 = 0.00508 0.00066 ## ClusteredRotamer 21 5 3 / 182 = 0.01648 0.00065 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 260 = 0.00385 0.00010 ## CloseGap 0 21 6 / 286 = 0.02098 0.00571 ## HealGap 0 15 9 / 357 = 0.02521 0.00071 ## MoveGap 0 0 0 / 124 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 257 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 129 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 241 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 122 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 581 = 0.00000 0.00000 ## CrossOver 0 0 0 / 125 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 120 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 131 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)L378 # TweakPsiPhi removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)S368 # TweakPsiSubtree removed gap before (T0547)K17 # TweakPhi removed gap before (T0547)E308 # TweakPsiPhi removed gap before (T0547)D393 # TweakPhi removed gap before (T0547)H151 # TweakPsiPhi removed gap before (T0547)E162 # TweakPsiSubtree removed gap before (T0547)N443 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiPhi removed gap before (T0547)N601 # TweakPhi removed gap before (T0547)K423 # TweakPsiSubtree removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)A536 # TweakPsiPhi removed gap before (T0547)E60 # TweakPhi removed gap before (T0547)I16 # TweakPsiSubtree removed gap before (T0547)Q226 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPhi removed gap before (T0547)A330 # TweakPsiSubtree removed gap before (T0547)F93 # TweakPhi removed gap before (T0547)R467 # TweakPsiPhi removed gap before (T0547)A476 # TweakPsiPhi removed gap before (T0547)Y25 # TweakPsiSubtree removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)E278 # TweakPhi removed gap before (T0547)D422 # TweakPsiSubtree removed gap before (T0547)V611 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)A553 # TweakPsiPhi removed gap before (T0547)E26 # TweakPsiSubtree removed gap before (T0547)I23 # TweakPsiPhi removed gap before (T0547)L49 # TweakPsiPhi removed gap before (T0547)L244 # TweakPsiPhi removed gap before (T0547)N270 # TweakPhi removed gap before (T0547)I388 # TweakPhi removed gap before (T0547)I23 # TweakPsiPhi removed gap before (T0547)A296 # TweakPsiPhi removed gap before (T0547)V94 # TweakPsiSubtree removed gap before (T0547)E343 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)R577 # TweakPsiPhi removed gap before (T0547)G45 # TweakPsiSubtree removed gap before (T0547)F460 # TweakPsiSubtree removed gap before (T0547)I417 # TweakPsiPhi removed gap before (T0547)Y565 # TweakPhi removed gap before (T0547)K357 # TweakPsiPhi removed gap before (T0547)H384 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)S112 # generation 232: best score out of 40: T0547.try1-opt2 201.93251 cost/residue, 736 clashes 0.12772 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 393 260 / 1309 = 0.19862 0.00341 ## JiggleSubtree 3 53 32 / 546 = 0.05861 0.00426 ## JiggleSegment 5 57 38 / 549 = 0.06922 0.00420 ## OptSubtree 1 0 0 / 129 = 0.00000 0.00000 ## OptSegment 0 1 1 / 260 = 0.00385 0.00135 ## OptAllSegments 0 0 0 / 120 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 129 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 107 = 0.00000 0.00000 ## TweakPhiSubtree 71 643 381 / 1741 = 0.21884 0.00469 ## TweakPhiSegment 61 725 428 / 1605 = 0.26667 0.00496 ## TweakPsiSubtree 2 531 347 / 1690 = 0.20533 0.00476 ## TweakPsiSegment 4 849 565 / 2248 = 0.25133 0.00618 ## TweakPsiPhiSubtree 200 600 368 / 1399 = 0.26305 0.00421 ## TweakPsiPhiSegment 167 540 309 / 1291 = 0.23935 0.00348 ## TweakHbondSubtree 26 358 218 / 1295 = 0.16834 0.00361 ## TweakHbondSegment 19 418 229 / 1310 = 0.17481 0.00385 ## TweakMultimer 429 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 69 299 195 / 675 = 0.28889 0.00138 ## FixOmega 4 0 0 / 117 = 0.00000 0.00000 ## Backrub 237 318 147 / 761 = 0.19317 0.00197 ## BigBackrub 199 139 78 / 716 = 0.10894 0.00222 ## OneRotamer 0 420 208 / 2061 = 0.10092 0.00442 ## ClashingRotamer 2 3 1 / 197 = 0.00508 0.00066 ## ClusteredRotamer 21 5 3 / 182 = 0.01648 0.00065 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 260 = 0.00385 0.00010 ## CloseGap 0 21 6 / 286 = 0.02098 0.00571 ## HealGap 0 15 9 / 358 = 0.02514 0.00070 ## MoveGap 0 0 0 / 124 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 257 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 129 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 241 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 122 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 582 = 0.00000 0.00000 ## CrossOver 0 0 0 / 125 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 120 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 131 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)P29 # TweakPsiPhi removed gap before (T0547)N216 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPsiSubtree removed gap before (T0547)S287 # TweakPsiPhi removed gap before (T0547)S372 # TweakPsiPhi removed gap before (T0547)N105 # TweakPsiPhi removed gap before (T0547)G64 # TweakPsiSubtree removed gap before (T0547)D364 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I153 # TweakPsiSubtree removed gap before (T0547)N61 # TweakPhi removed gap before (T0547)K310 # TweakPsiSubtree removed gap before (T0547)R467 # TweakPsiSubtree removed gap before (T0547)D480 # TweakPsiSubtree removed gap before (T0547)G455 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPsiPhi removed gap before (T0547)N141 # TweakPsiPhi removed gap before (T0547)H591 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L560 # TweakPhi removed gap before (T0547)A189 # TweakPsiPhi removed gap before (T0547)L375 # TweakPsiSubtree removed gap before (T0547)M229 # TweakPhi removed gap before (T0547)G190 # TweakPsiPhi removed gap before (T0547)H242 # TweakPhi removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)E435 # TweakPsiSubtree removed gap before (T0547)A276 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiPhi removed gap before (T0547)G272 # TweakPsiSubtree removed gap before (T0547)N585 # TweakPsiPhi removed gap before (T0547)Y605 # TweakPsiSubtree removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)D469 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)K414 # TweakPhi removed gap before (T0547)H384 # TweakPsiSubtree removed gap before (T0547)I570 # TweakPsiPhi removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)Y295 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPsiPhi removed gap before (T0547)I34 # TweakPsiPhi removed gap before (T0547)I417 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPsiPhi removed gap before (T0547)A147 # TweakPsiPhi removed gap before (T0547)K246 # TweakPhi removed gap before (T0547)Y363 # TweakPsiSubtree removed gap before (T0547)M120 # TweakPsiPhi removed gap before (T0547)L48 # TweakPsiPhi removed gap before (T0547)I592 # TweakPsiPhi removed gap before (T0547)N96 # TweakPsiPhi removed gap before (T0547)Q281 # generation 233: best score out of 40: T0547.try1-opt2 201.91557 cost/residue, 744 clashes 0.12733 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 395 260 / 1320 = 0.19697 0.00338 ## JiggleSubtree 3 53 32 / 549 = 0.05829 0.00423 ## JiggleSegment 5 57 38 / 549 = 0.06922 0.00420 ## OptSubtree 1 0 0 / 129 = 0.00000 0.00000 ## OptSegment 0 1 1 / 261 = 0.00383 0.00134 ## OptAllSegments 0 0 0 / 121 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 129 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 107 = 0.00000 0.00000 ## TweakPhiSubtree 71 644 381 / 1744 = 0.21846 0.00468 ## TweakPhiSegment 61 727 430 / 1608 = 0.26741 0.00495 ## TweakPsiSubtree 2 533 348 / 1698 = 0.20495 0.00474 ## TweakPsiSegment 4 854 571 / 2266 = 0.25199 0.00617 ## TweakPsiPhiSubtree 202 604 370 / 1416 = 0.26130 0.00417 ## TweakPsiPhiSegment 169 541 310 / 1297 = 0.23901 0.00347 ## TweakHbondSubtree 26 359 218 / 1300 = 0.16769 0.00359 ## TweakHbondSegment 20 418 229 / 1315 = 0.17414 0.00384 ## TweakMultimer 431 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 70 301 196 / 679 = 0.28866 0.00137 ## FixOmega 4 0 0 / 117 = 0.00000 0.00000 ## Backrub 237 322 149 / 767 = 0.19426 0.00197 ## BigBackrub 202 139 78 / 717 = 0.10879 0.00222 ## OneRotamer 0 420 208 / 2066 = 0.10068 0.00441 ## ClashingRotamer 2 3 1 / 197 = 0.00508 0.00066 ## ClusteredRotamer 21 5 3 / 182 = 0.01648 0.00065 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 260 = 0.00385 0.00010 ## CloseGap 0 21 6 / 286 = 0.02098 0.00571 ## HealGap 0 15 9 / 359 = 0.02507 0.00070 ## MoveGap 0 0 0 / 124 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 257 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 129 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 241 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 123 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 583 = 0.00000 0.00000 ## CrossOver 0 0 0 / 125 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 120 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 131 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)N459 # TweakPsiSubtree removed gap before (T0547)R439 # TweakPhi removed gap before (T0547)V611 # TweakPsiSubtree removed gap before (T0547)K414 # TweakPsiPhi removed gap before (T0547)V584 # TweakPsiPhi removed gap before (T0547)K353 # TweakPhi removed gap before (T0547)K267 # TweakPsiPhi removed gap before (T0547)N284 # TweakPsiPhi removed gap before (T0547)L394 # TweakPsiSubtree removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)L411 # TweakPsiPhi removed gap before (T0547)E164 # TweakPsiSubtree removed gap before (T0547)M450 # TweakPsiPhi removed gap before (T0547)A251 # TweakPhi removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)I556 # TweakPhi removed gap before (T0547)L48 # TweakPhi removed gap before (T0547)S236 # TweakPhi removed gap before (T0547)F318 # TweakPsiPhi removed gap before (T0547)N253 # TweakPsiSubtree removed gap before (T0547)F340 # TweakPhi removed gap before (T0547)L499 # TweakPsiPhi removed gap before (T0547)D168 # TweakPsiSubtree removed gap before (T0547)G262 # TweakPsiPhi removed gap before (T0547)D3 # TweakPsiSubtree removed gap before (T0547)E552 # TweakPhi removed gap before (T0547)Y366 # TweakPsiPhi removed gap before (T0547)A189 # TweakPsiPhi removed gap before (T0547)I412 # TweakPsiSubtree removed gap before (T0547)D484 # TweakPsiSubtree removed gap before (T0547)Y25 # TweakPsiSubtree removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)K493 # TweakPsiSubtree removed gap before (T0547)E561 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiPhi removed gap before (T0547)D364 # TweakPsiSubtree removed gap before (T0547)E346 # TweakPsiPhi removed gap before (T0547)A476 # TweakPsiPhi removed gap before (T0547)K68 # TweakPsiSubtree removed gap before (T0547)T209 # TweakPsiSubtree removed gap before (T0547)K587 # TweakPsiPhi removed gap before (T0547)E213 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPhi removed gap before (T0547)E435 # TweakPhi removed gap before (T0547)Q342 # TweakPsiSubtree removed gap before (T0547)I417 # TweakPsiSubtree removed gap before (T0547)K415 # TweakPsiPhi removed gap before (T0547)H242 # TweakPsiSubtree removed gap before (T0547)G64 # TweakPsiSubtree removed gap before (T0547)K311 # TweakPhi removed gap before (T0547)I609 # TweakPhi removed gap before (T0547)Y290 # TweakPsiPhi removed gap before (T0547)L408 # TweakPsiSubtree removed gap before (T0547)D484 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPhi removed gap before (T0547)E576 # TweakPsiSubtree removed gap before (T0547)E546 # TweakPsiSubtree removed gap before (T0547)Y363 # TweakPsiPhi removed gap before (T0547)E320 # TweakPsiPhi removed gap before (T0547)L258 # TweakPsiPhi removed gap before (T0547)L234 # generation 234: best score out of 40: T0547.try1-opt2 201.91353 cost/residue, 735 clashes 0.12745 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 397 261 / 1327 = 0.19668 0.00337 ## JiggleSubtree 3 53 32 / 552 = 0.05797 0.00421 ## JiggleSegment 5 57 38 / 549 = 0.06922 0.00420 ## OptSubtree 1 0 0 / 129 = 0.00000 0.00000 ## OptSegment 0 1 1 / 261 = 0.00383 0.00134 ## OptAllSegments 0 0 0 / 121 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 130 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 107 = 0.00000 0.00000 ## TweakPhiSubtree 72 645 381 / 1747 = 0.21809 0.00467 ## TweakPhiSegment 61 731 432 / 1618 = 0.26700 0.00493 ## TweakPsiSubtree 2 535 349 / 1706 = 0.20457 0.00475 ## TweakPsiSegment 4 860 574 / 2288 = 0.25087 0.00612 ## TweakPsiPhiSubtree 205 606 370 / 1427 = 0.25929 0.00414 ## TweakPsiPhiSegment 171 547 313 / 1307 = 0.23948 0.00348 ## TweakHbondSubtree 26 360 218 / 1302 = 0.16743 0.00359 ## TweakHbondSegment 20 419 230 / 1319 = 0.17437 0.00383 ## TweakMultimer 433 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 71 301 196 / 681 = 0.28781 0.00137 ## FixOmega 4 0 0 / 117 = 0.00000 0.00000 ## Backrub 237 322 150 / 771 = 0.19455 0.00196 ## BigBackrub 202 140 78 / 720 = 0.10833 0.00221 ## OneRotamer 0 420 208 / 2071 = 0.10043 0.00440 ## ClashingRotamer 2 3 1 / 197 = 0.00508 0.00066 ## ClusteredRotamer 21 5 3 / 182 = 0.01648 0.00065 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 260 = 0.00385 0.00010 ## CloseGap 0 21 6 / 287 = 0.02091 0.00569 ## HealGap 0 15 9 / 359 = 0.02507 0.00070 ## MoveGap 0 0 0 / 124 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 257 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 129 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 243 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 123 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 585 = 0.00000 0.00000 ## CrossOver 0 0 0 / 125 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 120 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 131 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)P128 # TweakPhi removed gap before (T0547)E172 # TweakPsiPhi removed gap before (T0547)L85 # TweakPsiPhi removed gap before (T0547)D168 # TweakPsiSubtree removed gap before (T0547)E213 # TweakPhi removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)E505 # TweakPsiSubtree removed gap before (T0547)G421 # TweakPsiSubtree removed gap before (T0547)D428 # TweakPsiSubtree removed gap before (T0547)A553 # TweakPsiPhi removed gap before (T0547)S477 # TweakPsiPhi removed gap before (T0547)D602 # TweakPsiPhi removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPsiSubtree removed gap before (T0547)G159 # TweakPhi removed gap before (T0547)M229 # TweakPsiPhi removed gap before (T0547)D103 # TweakPsiSubtree removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)H527 # TweakPsiSubtree removed gap before (T0547)L411 # TweakPsiPhi removed gap before (T0547)E162 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E320 # TweakPhi removed gap before (T0547)T390 # TweakPhi removed gap before (T0547)L54 # TweakPsiPhi removed gap before (T0547)T239 # TweakPsiSubtree removed gap before (T0547)L303 # TweakPsiPhi removed gap before (T0547)L332 # TweakPsiSubtree removed gap before (T0547)D393 # TweakPsiSubtree removed gap before (T0547)N425 # TweakPsiSubtree removed gap before (T0547)E138 # TweakPhi removed gap before (T0547)L399 # TweakPhi removed gap before (T0547)Y440 # TweakPsiPhi removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)A330 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPsiPhi removed gap before (T0547)D564 # TweakPhi removed gap before (T0547)N201 # TweakPhi removed gap before (T0547)L38 # TweakPsiSubtree removed gap before (T0547)M450 # TweakPsiPhi removed gap before (T0547)H242 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)N355 # TweakPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)Y363 # TweakPsiPhi removed gap before (T0547)E576 # TweakPsiSubtree removed gap before (T0547)Y491 # TweakPsiPhi removed gap before (T0547)V522 # TweakPsiSubtree removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)N459 # TweakPsiPhi removed gap before (T0547)A170 # TweakPsiSubtree removed gap before (T0547)K423 # TweakPsiSubtree removed gap before (T0547)S287 # TweakPsiPhi removed gap before (T0547)K219 # TweakPsiSubtree removed gap before (T0547)P472 # TweakPsiPhi removed gap before (T0547)V191 # TweakPsiSubtree removed gap before (T0547)K102 # generation 235: best score out of 40: T0547.try1-opt2 201.81364 cost/residue, 746 clashes 0.12728 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 399 262 / 1332 = 0.19670 0.00336 ## JiggleSubtree 3 53 32 / 554 = 0.05776 0.00420 ## JiggleSegment 5 57 38 / 549 = 0.06922 0.00420 ## OptSubtree 1 0 0 / 129 = 0.00000 0.00000 ## OptSegment 0 1 1 / 261 = 0.00383 0.00134 ## OptAllSegments 0 0 0 / 121 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 130 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 107 = 0.00000 0.00000 ## TweakPhiSubtree 72 646 381 / 1752 = 0.21747 0.00466 ## TweakPhiSegment 61 733 432 / 1625 = 0.26585 0.00491 ## TweakPsiSubtree 2 538 350 / 1714 = 0.20420 0.00474 ## TweakPsiSegment 4 865 582 / 2313 = 0.25162 0.00614 ## TweakPsiPhiSubtree 205 613 373 / 1440 = 0.25903 0.00414 ## TweakPsiPhiSegment 173 548 316 / 1312 = 0.24085 0.00347 ## TweakHbondSubtree 26 361 219 / 1303 = 0.16807 0.00359 ## TweakHbondSegment 20 421 231 / 1322 = 0.17474 0.00383 ## TweakMultimer 437 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 71 301 196 / 681 = 0.28781 0.00137 ## FixOmega 4 0 0 / 117 = 0.00000 0.00000 ## Backrub 239 323 151 / 774 = 0.19509 0.00199 ## BigBackrub 203 141 78 / 725 = 0.10759 0.00219 ## OneRotamer 0 422 208 / 2083 = 0.09986 0.00438 ## ClashingRotamer 2 3 1 / 198 = 0.00505 0.00066 ## ClusteredRotamer 21 5 3 / 182 = 0.01648 0.00065 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 261 = 0.00383 0.00010 ## CloseGap 0 21 6 / 287 = 0.02091 0.00569 ## HealGap 0 15 9 / 359 = 0.02507 0.00070 ## MoveGap 0 0 0 / 124 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 258 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 130 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 243 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 123 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 587 = 0.00000 0.00000 ## CrossOver 0 0 0 / 125 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 120 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 131 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)A263 # TweakPsiPhi removed gap before (T0547)E535 # TweakPsiPhi removed gap before (T0547)S202 # TweakPsiSubtree removed gap before (T0547)D380 # TweakPsiPhi removed gap before (T0547)E505 # TweakPsiSubtree removed gap before (T0547)K219 # TweakPsiPhi removed gap before (T0547)A195 # TweakPsiPhi removed gap before (T0547)G64 # TweakPhi removed gap before (T0547)E376 # TweakPsiPhi removed gap before (T0547)A247 # TweakPsiPhi removed gap before (T0547)G517 # TweakPsiSubtree removed gap before (T0547)P52 # TweakPsiPhi removed gap before (T0547)V547 # TweakPhi removed gap before (T0547)I23 # TweakPsiSubtree removed gap before (T0547)R439 # TweakPsiSubtree removed gap before (T0547)Y295 # TweakPsiSubtree removed gap before (T0547)M2 # TweakPsiSubtree removed gap before (T0547)P315 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)K135 # TweakPsiPhi removed gap before (T0547)Y104 # TweakPsiPhi removed gap before (T0547)L511 # TweakPsiSubtree removed gap before (T0547)D434 # TweakPsiSubtree removed gap before (T0547)E548 # TweakPsiSubtree removed gap before (T0547)G395 # TweakPsiSubtree removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)L391 # TweakPsiSubtree removed gap before (T0547)R577 # TweakPsiPhi removed gap before (T0547)I269 # TweakPsiSubtree removed gap before (T0547)I166 # TweakPsiPhi removed gap before (T0547)K245 # TweakPhi removed gap before (T0547)S202 # TweakPsiPhi removed gap before (T0547)L303 # TweakPsiPhi removed gap before (T0547)K86 # TweakPsiPhi removed gap before (T0547)S403 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPsiPhi removed gap before (T0547)E361 # TweakPsiSubtree removed gap before (T0547)S372 # TweakPsiPhi removed gap before (T0547)T531 # TweakPsiPhi removed gap before (T0547)S368 # TweakPsiPhi removed gap before (T0547)A165 # TweakPhi removed gap before (T0547)G544 # TweakPsiPhi removed gap before (T0547)I556 # TweakPhi removed gap before (T0547)T256 # TweakPhi removed gap before (T0547)K171 # TweakPhi removed gap before (T0547)V35 # generation 236: best score out of 40: T0547.try1-opt2 201.81165 cost/residue, 746 clashes 0.12725 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 402 264 / 1340 = 0.19701 0.00335 ## JiggleSubtree 3 53 32 / 555 = 0.05766 0.00419 ## JiggleSegment 5 57 38 / 549 = 0.06922 0.00420 ## OptSubtree 1 0 0 / 129 = 0.00000 0.00000 ## OptSegment 0 1 1 / 261 = 0.00383 0.00134 ## OptAllSegments 0 0 0 / 121 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 131 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 109 = 0.00000 0.00000 ## TweakPhiSubtree 72 648 382 / 1755 = 0.21766 0.00466 ## TweakPhiSegment 61 736 434 / 1633 = 0.26577 0.00490 ## TweakPsiSubtree 2 538 350 / 1718 = 0.20373 0.00473 ## TweakPsiSegment 4 868 585 / 2328 = 0.25129 0.00613 ## TweakPsiPhiSubtree 207 621 377 / 1456 = 0.25893 0.00412 ## TweakPsiPhiSegment 174 550 317 / 1319 = 0.24033 0.00346 ## TweakHbondSubtree 26 361 219 / 1306 = 0.16769 0.00359 ## TweakHbondSegment 20 421 231 / 1324 = 0.17447 0.00383 ## TweakMultimer 438 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 72 301 196 / 685 = 0.28613 0.00136 ## FixOmega 4 0 0 / 118 = 0.00000 0.00000 ## Backrub 240 327 153 / 780 = 0.19615 0.00201 ## BigBackrub 203 141 78 / 728 = 0.10714 0.00218 ## OneRotamer 0 423 209 / 2092 = 0.09990 0.00436 ## ClashingRotamer 2 3 1 / 198 = 0.00505 0.00066 ## ClusteredRotamer 21 5 3 / 183 = 0.01639 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 262 = 0.00382 0.00010 ## CloseGap 0 21 6 / 287 = 0.02091 0.00569 ## HealGap 0 15 9 / 359 = 0.02507 0.00070 ## MoveGap 0 0 0 / 124 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 258 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 131 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 244 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 125 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 588 = 0.00000 0.00000 ## CrossOver 0 0 0 / 125 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 120 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 131 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)K99 # TweakPsiPhi removed gap before (T0547)K36 # TweakPsiPhi removed gap before (T0547)I417 # TweakPsiPhi removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)R323 # TweakPhi removed gap before (T0547)L420 # TweakPsiSubtree removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)E125 # TweakPsiPhi removed gap before (T0547)K20 # TweakPsiPhi removed gap before (T0547)F444 # TweakPhi removed gap before (T0547)N404 # TweakPsiPhi removed gap before (T0547)D469 # TweakPsiPhi removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)I540 # TweakPsiPhi removed gap before (T0547)K135 # TweakPsiPhi removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)A127 # TweakPsiPhi removed gap before (T0547)V277 # TweakPsiSubtree removed gap before (T0547)K246 # TweakPsiSubtree removed gap before (T0547)N201 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)E386 # TweakPsiPhi removed gap before (T0547)S581 # TweakPsiPhi removed gap before (T0547)L468 # TweakPsiPhi removed gap before (T0547)G143 # TweakPsiPhi removed gap before (T0547)R467 # TweakPsiPhi removed gap before (T0547)L217 # TweakPsiSubtree removed gap before (T0547)W479 # TweakPhi removed gap before (T0547)V82 # TweakPsiPhi removed gap before (T0547)E220 # TweakPsiSubtree removed gap before (T0547)F232 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPhi removed gap before (T0547)D33 # TweakPsiSubtree removed gap before (T0547)R70 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)D393 # TweakPsiPhi removed gap before (T0547)K27 # TweakPhi removed gap before (T0547)W479 # TweakPsiSubtree removed gap before (T0547)K286 # TweakPsiPhi removed gap before (T0547)I551 # TweakPsiSubtree removed gap before (T0547)A405 # TweakPsiPhi removed gap before (T0547)A427 # generation 237: best score out of 40: T0547.try1-opt2 201.79337 cost/residue, 746 clashes 0.12728 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 404 265 / 1352 = 0.19601 0.00332 ## JiggleSubtree 3 53 32 / 557 = 0.05745 0.00417 ## JiggleSegment 5 57 38 / 550 = 0.06909 0.00419 ## OptSubtree 1 0 0 / 129 = 0.00000 0.00000 ## OptSegment 0 1 1 / 263 = 0.00380 0.00133 ## OptAllSegments 0 0 0 / 121 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 131 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 109 = 0.00000 0.00000 ## TweakPhiSubtree 72 648 382 / 1759 = 0.21717 0.00465 ## TweakPhiSegment 61 738 436 / 1637 = 0.26634 0.00490 ## TweakPsiSubtree 2 541 352 / 1727 = 0.20382 0.00472 ## TweakPsiSegment 4 875 590 / 2339 = 0.25224 0.00613 ## TweakPsiPhiSubtree 208 624 379 / 1465 = 0.25870 0.00411 ## TweakPsiPhiSegment 176 554 321 / 1331 = 0.24117 0.00348 ## TweakHbondSubtree 26 362 219 / 1308 = 0.16743 0.00358 ## TweakHbondSegment 20 423 233 / 1332 = 0.17492 0.00382 ## TweakMultimer 439 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 72 304 196 / 690 = 0.28406 0.00135 ## FixOmega 4 0 0 / 118 = 0.00000 0.00000 ## Backrub 241 330 156 / 788 = 0.19797 0.00203 ## BigBackrub 203 141 78 / 734 = 0.10627 0.00217 ## OneRotamer 0 423 209 / 2094 = 0.09981 0.00436 ## ClashingRotamer 2 3 1 / 198 = 0.00505 0.00066 ## ClusteredRotamer 21 5 3 / 183 = 0.01639 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 262 = 0.00382 0.00010 ## CloseGap 0 21 6 / 288 = 0.02083 0.00567 ## HealGap 0 15 9 / 359 = 0.02507 0.00070 ## MoveGap 0 0 0 / 124 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 258 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 131 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 244 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 125 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 589 = 0.00000 0.00000 ## CrossOver 0 0 0 / 125 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 121 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 131 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)E72 # TweakPsiPhi removed gap before (T0547)G610 # TweakPhi removed gap before (T0547)A374 # TweakPsiSubtree removed gap before (T0547)G205 # TweakPhi removed gap before (T0547)L574 # TweakPsiPhi removed gap before (T0547)L583 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)F227 # TweakPsiPhi removed gap before (T0547)E535 # TweakPsiSubtree removed gap before (T0547)E164 # TweakPsiSubtree removed gap before (T0547)I167 # TweakPsiPhi removed gap before (T0547)E507 # TweakPsiPhi removed gap before (T0547)L48 # TweakPsiPhi removed gap before (T0547)G133 # TweakPsiSubtree removed gap before (T0547)L54 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L499 # TweakPsiPhi removed gap before (T0547)I238 # TweakPsiSubtree removed gap before (T0547)H187 # TweakPsiSubtree removed gap before (T0547)K587 # TweakPsiSubtree removed gap before (T0547)I302 # TweakPsiPhi removed gap before (T0547)G421 # TweakPsiPhi removed gap before (T0547)I609 # TweakPhi removed gap before (T0547)I412 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)K267 # TweakPsiSubtree removed gap before (T0547)P533 # TweakPsiSubtree removed gap before (T0547)N67 # TweakPsiPhi removed gap before (T0547)N13 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K264 # TweakPsiPhi removed gap before (T0547)L275 # TweakPsiPhi removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)L394 # TweakPhi removed gap before (T0547)N141 # TweakPhi removed gap before (T0547)A276 # TweakPhi removed gap before (T0547)K36 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPsiSubtree removed gap before (T0547)I537 # TweakPhi removed gap before (T0547)K423 # TweakPhi removed gap before (T0547)I319 # TweakPsiPhi removed gap before (T0547)V336 # TweakPsiPhi removed gap before (T0547)D484 # TweakPsiPhi removed gap before (T0547)E576 # TweakPsiSubtree removed gap before (T0547)E406 # TweakPsiSubtree removed gap before (T0547)I241 # TweakPhi removed gap before (T0547)A251 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPhi removed gap before (T0547)T473 # TweakPsiSubtree removed gap before (T0547)V82 # TweakPsiSubtree removed gap before (T0547)L275 # TweakPsiPhi removed gap before (T0547)L100 # generation 238: best score out of 40: T0547.try1-opt2 201.74422 cost/residue, 748 clashes 0.12701 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 406 267 / 1359 = 0.19647 0.00332 ## JiggleSubtree 3 53 32 / 557 = 0.05745 0.00417 ## JiggleSegment 5 57 38 / 550 = 0.06909 0.00419 ## OptSubtree 1 0 0 / 130 = 0.00000 0.00000 ## OptSegment 0 1 1 / 263 = 0.00380 0.00133 ## OptAllSegments 0 0 0 / 121 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 131 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 109 = 0.00000 0.00000 ## TweakPhiSubtree 72 651 385 / 1765 = 0.21813 0.00467 ## TweakPhiSegment 62 740 438 / 1643 = 0.26659 0.00492 ## TweakPsiSubtree 2 541 353 / 1736 = 0.20334 0.00470 ## TweakPsiSegment 4 880 592 / 2356 = 0.25127 0.00610 ## TweakPsiPhiSubtree 210 626 383 / 1477 = 0.25931 0.00410 ## TweakPsiPhiSegment 178 558 323 / 1339 = 0.24122 0.00347 ## TweakHbondSubtree 26 362 219 / 1312 = 0.16692 0.00357 ## TweakHbondSegment 20 424 234 / 1338 = 0.17489 0.00381 ## TweakMultimer 446 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 73 307 198 / 698 = 0.28367 0.00134 ## FixOmega 4 0 0 / 118 = 0.00000 0.00000 ## Backrub 244 332 159 / 795 = 0.20000 0.00205 ## BigBackrub 204 141 78 / 735 = 0.10612 0.00216 ## OneRotamer 0 426 211 / 2098 = 0.10057 0.00439 ## ClashingRotamer 2 3 1 / 199 = 0.00503 0.00066 ## ClusteredRotamer 21 5 3 / 183 = 0.01639 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 262 = 0.00382 0.00010 ## CloseGap 0 21 6 / 288 = 0.02083 0.00567 ## HealGap 0 15 9 / 359 = 0.02507 0.00070 ## MoveGap 0 0 0 / 125 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 258 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 131 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 245 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 125 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 590 = 0.00000 0.00000 ## CrossOver 0 0 0 / 125 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 121 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 131 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)S188 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F444 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)G517 # TweakPsiPhi removed gap before (T0547)E294 # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiPhi removed gap before (T0547)L48 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPsiPhi removed gap before (T0547)N96 # TweakPsiPhi removed gap before (T0547)K543 # TweakPsiPhi removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)M261 # TweakPhi removed gap before (T0547)I180 # TweakPsiSubtree removed gap before (T0547)I142 # TweakPhi removed gap before (T0547)L139 # TweakPhi removed gap before (T0547)K526 # TweakPhi removed gap before (T0547)T239 # TweakPsiPhi removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)G273 # TweakPsiSubtree removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)H187 # TweakPhi removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPsiPhi removed gap before (T0547)R173 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)Q554 # TweakPsiPhi removed gap before (T0547)E406 # TweakPsiSubtree removed gap before (T0547)N18 # TweakPhi removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)K286 # TweakPsiPhi removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)I350 # TweakPsiPhi removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)S581 # TweakPsiSubtree removed gap before (T0547)E12 # TweakPsiPhi removed gap before (T0547)S287 # TweakPsiPhi removed gap before (T0547)L85 # TweakPhi removed gap before (T0547)V502 # TweakPsiPhi removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)K286 # TweakPsiSubtree removed gap before (T0547)I609 # TweakPsiSubtree removed gap before (T0547)E250 # TweakPsiPhi removed gap before (T0547)D602 # TweakPsiPhi removed gap before (T0547)K76 # TweakPsiSubtree removed gap before (T0547)A276 # TweakPsiPhi removed gap before (T0547)D364 # TweakPsiSubtree removed gap before (T0547)D103 # TweakPsiPhi removed gap before (T0547)I570 # TweakPsiPhi removed gap before (T0547)I462 # TweakPsiPhi removed gap before (T0547)T531 # TweakPsiPhi removed gap before (T0547)L557 # TweakPsiPhi removed gap before (T0547)G133 # TweakPsiSubtree removed gap before (T0547)H384 # TweakPsiSubtree removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)Y545 # TweakPsiSubtree removed gap before (T0547)I34 # generation 239: best score out of 40: T0547.try1-opt2 201.60815 cost/residue, 741 clashes 0.12728 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 408 268 / 1368 = 0.19591 0.00331 ## JiggleSubtree 3 53 32 / 558 = 0.05735 0.00417 ## JiggleSegment 5 57 38 / 550 = 0.06909 0.00419 ## OptSubtree 1 0 0 / 130 = 0.00000 0.00000 ## OptSegment 0 1 1 / 263 = 0.00380 0.00133 ## OptAllSegments 0 0 0 / 122 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 131 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 109 = 0.00000 0.00000 ## TweakPhiSubtree 73 654 386 / 1772 = 0.21783 0.00465 ## TweakPhiSegment 64 742 439 / 1648 = 0.26638 0.00491 ## TweakPsiSubtree 2 542 354 / 1745 = 0.20287 0.00468 ## TweakPsiSegment 4 886 598 / 2369 = 0.25243 0.00610 ## TweakPsiPhiSubtree 213 631 384 / 1489 = 0.25789 0.00407 ## TweakPsiPhiSegment 179 562 326 / 1351 = 0.24130 0.00347 ## TweakHbondSubtree 26 363 219 / 1316 = 0.16641 0.00356 ## TweakHbondSegment 20 424 234 / 1343 = 0.17424 0.00379 ## TweakMultimer 449 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 74 307 198 / 700 = 0.28286 0.00134 ## FixOmega 4 0 0 / 119 = 0.00000 0.00000 ## Backrub 246 334 160 / 801 = 0.19975 0.00204 ## BigBackrub 204 141 78 / 736 = 0.10598 0.00216 ## OneRotamer 0 427 212 / 2103 = 0.10081 0.00445 ## ClashingRotamer 2 3 1 / 199 = 0.00503 0.00066 ## ClusteredRotamer 21 5 3 / 183 = 0.01639 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 265 = 0.00377 0.00010 ## CloseGap 0 21 6 / 288 = 0.02083 0.00567 ## HealGap 0 15 9 / 359 = 0.02507 0.00070 ## MoveGap 0 0 0 / 125 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 258 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 131 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 246 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 125 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 592 = 0.00000 0.00000 ## CrossOver 0 0 0 / 125 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 121 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 132 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)N575 # TweakPsiPhi removed gap before (T0547)V502 # TweakPsiPhi removed gap before (T0547)D3 # TweakPsiSubtree removed gap before (T0547)V331 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L271 # TweakPsiPhi removed gap before (T0547)E148 # TweakPhi removed gap before (T0547)L163 # TweakPhi removed gap before (T0547)A345 # TweakPsiPhi removed gap before (T0547)D503 # TweakPsiPhi removed gap before (T0547)Q342 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPsiSubtree removed gap before (T0547)I573 # TweakPhi removed gap before (T0547)F453 # TweakPsiSubtree removed gap before (T0547)S579 # TweakPsiPhi removed gap before (T0547)L560 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPhi removed gap before (T0547)L223 # TweakPsiPhi removed gap before (T0547)H591 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)G107 # TweakPsiSubtree removed gap before (T0547)L244 # TweakPsiSubtree removed gap before (T0547)E125 # TweakPhi removed gap before (T0547)L211 # TweakPsiPhi removed gap before (T0547)A30 # TweakPsiSubtree removed gap before (T0547)P52 # TweakPsiPhi removed gap before (T0547)L394 # TweakPsiPhi removed gap before (T0547)L441 # TweakPsiPhi removed gap before (T0547)H53 # TweakPhi removed gap before (T0547)D136 # TweakPsiPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)Y396 # TweakPsiSubtree removed gap before (T0547)Y122 # TweakPsiSubtree removed gap before (T0547)K423 # TweakPsiSubtree removed gap before (T0547)D484 # TweakPsiPhi removed gap before (T0547)F447 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A110 # TweakPhi removed gap before (T0547)E225 # TweakPsiPhi removed gap before (T0547)S188 # TweakPsiSubtree removed gap before (T0547)F460 # TweakPsiPhi removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)S581 # TweakPsiSubtree removed gap before (T0547)R50 # TweakPsiPhi removed gap before (T0547)R323 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V336 # TweakPsiPhi removed gap before (T0547)L606 # generation 240: best score out of 40: T0547.try1-opt2 201.60017 cost/residue, 741 clashes 0.12728 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 408 268 / 1377 = 0.19463 0.00329 ## JiggleSubtree 3 53 32 / 563 = 0.05684 0.00413 ## JiggleSegment 5 57 38 / 550 = 0.06909 0.00419 ## OptSubtree 1 0 0 / 130 = 0.00000 0.00000 ## OptSegment 0 1 1 / 263 = 0.00380 0.00133 ## OptAllSegments 0 0 0 / 123 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 131 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 109 = 0.00000 0.00000 ## TweakPhiSubtree 73 655 386 / 1776 = 0.21734 0.00464 ## TweakPhiSegment 65 742 440 / 1653 = 0.26618 0.00490 ## TweakPsiSubtree 2 544 355 / 1753 = 0.20251 0.00466 ## TweakPsiSegment 4 889 601 / 2379 = 0.25263 0.00610 ## TweakPsiPhiSubtree 216 634 385 / 1496 = 0.25735 0.00406 ## TweakPsiPhiSegment 179 569 331 / 1366 = 0.24231 0.00348 ## TweakHbondSubtree 26 364 220 / 1320 = 0.16667 0.00357 ## TweakHbondSegment 20 427 235 / 1349 = 0.17420 0.00378 ## TweakMultimer 450 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 74 309 199 / 704 = 0.28267 0.00134 ## FixOmega 4 0 0 / 120 = 0.00000 0.00000 ## Backrub 249 339 162 / 808 = 0.20050 0.00204 ## BigBackrub 205 141 78 / 738 = 0.10569 0.00215 ## OneRotamer 0 427 212 / 2110 = 0.10047 0.00444 ## ClashingRotamer 2 3 1 / 200 = 0.00500 0.00065 ## ClusteredRotamer 21 5 3 / 183 = 0.01639 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 265 = 0.00377 0.00010 ## CloseGap 0 21 6 / 290 = 0.02069 0.00563 ## HealGap 0 15 9 / 359 = 0.02507 0.00070 ## MoveGap 0 0 0 / 125 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 258 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 131 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 246 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 125 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 592 = 0.00000 0.00000 ## CrossOver 0 0 0 / 125 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 121 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 134 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)Q554 # TweakPsiPhi removed gap before (T0547)E250 # TweakPsiSubtree removed gap before (T0547)P176 # TweakPsiSubtree removed gap before (T0547)I15 # TweakPhi removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPsiPhi removed gap before (T0547)I573 # TweakPsiPhi removed gap before (T0547)R467 # TweakPhi removed gap before (T0547)G92 # TweakPsiPhi removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)F134 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)F14 # TweakPhi removed gap before (T0547)K222 # TweakPsiPhi removed gap before (T0547)A214 # TweakPsiSubtree removed gap before (T0547)N601 # TweakPsiSubtree removed gap before (T0547)D586 # TweakPsiSubtree removed gap before (T0547)L358 # TweakPsiSubtree removed gap before (T0547)F66 # TweakPsiSubtree removed gap before (T0547)E595 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I319 # TweakPhi removed gap before (T0547)I537 # TweakPsiPhi removed gap before (T0547)E435 # TweakPhi removed gap before (T0547)G604 # TweakPsiSubtree removed gap before (T0547)F73 # TweakPsiPhi removed gap before (T0547)T473 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPsiPhi removed gap before (T0547)A427 # TweakPsiSubtree removed gap before (T0547)I592 # TweakPhi removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)E37 # TweakPsiSubtree removed gap before (T0547)N132 # TweakPsiPhi removed gap before (T0547)D452 # TweakPsiSubtree removed gap before (T0547)C22 # TweakPhi removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)A30 # TweakPsiPhi removed gap before (T0547)G143 # TweakPsiPhi removed gap before (T0547)E576 # TweakPhi removed gap before (T0547)L394 # TweakPsiPhi removed gap before (T0547)A345 # TweakPhi removed gap before (T0547)K27 # TweakPsiPhi removed gap before (T0547)S381 # TweakPsiSubtree removed gap before (T0547)E220 # TweakPhi removed gap before (T0547)A405 # TweakPhi removed gap before (T0547)R70 # TweakPsiSubtree removed gap before (T0547)E548 # TweakPsiSubtree removed gap before (T0547)V184 # TweakPhi removed gap before (T0547)N603 # TweakPsiPhi removed gap before (T0547)I609 # generation 241: best score out of 40: T0547.try1-opt2 201.59265 cost/residue, 741 clashes 0.12729 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 411 269 / 1385 = 0.19422 0.00327 ## JiggleSubtree 3 53 32 / 563 = 0.05684 0.00413 ## JiggleSegment 5 57 38 / 550 = 0.06909 0.00419 ## OptSubtree 1 0 0 / 130 = 0.00000 0.00000 ## OptSegment 0 1 1 / 264 = 0.00379 0.00133 ## OptAllSegments 0 0 0 / 123 = 0.00000 0.00000 ## ShiftSubtree 2 0 0 / 131 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 109 = 0.00000 0.00000 ## TweakPhiSubtree 73 658 389 / 1783 = 0.21817 0.00463 ## TweakPhiSegment 65 746 441 / 1659 = 0.26582 0.00488 ## TweakPsiSubtree 2 548 357 / 1763 = 0.20250 0.00464 ## TweakPsiSegment 4 895 605 / 2393 = 0.25282 0.00608 ## TweakPsiPhiSubtree 216 635 388 / 1501 = 0.25849 0.00406 ## TweakPsiPhiSegment 180 572 333 / 1376 = 0.24201 0.00345 ## TweakHbondSubtree 26 365 220 / 1322 = 0.16641 0.00356 ## TweakHbondSegment 20 429 236 / 1357 = 0.17391 0.00376 ## TweakMultimer 452 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 75 313 201 / 711 = 0.28270 0.00135 ## FixOmega 4 0 0 / 120 = 0.00000 0.00000 ## Backrub 249 339 163 / 813 = 0.20049 0.00204 ## BigBackrub 207 142 78 / 741 = 0.10526 0.00215 ## OneRotamer 0 427 212 / 2123 = 0.09986 0.00441 ## ClashingRotamer 2 3 1 / 200 = 0.00500 0.00065 ## ClusteredRotamer 21 5 3 / 183 = 0.01639 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 265 = 0.00377 0.00010 ## CloseGap 0 21 6 / 290 = 0.02069 0.00563 ## HealGap 0 15 9 / 359 = 0.02507 0.00070 ## MoveGap 0 0 0 / 125 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 258 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 131 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 246 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 125 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 592 = 0.00000 0.00000 ## CrossOver 0 0 0 / 126 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 121 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 134 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)I333 # TweakPhi removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)I359 # TweakPsiSubtree removed gap before (T0547)D428 # TweakPsiSubtree removed gap before (T0547)Y545 # TweakPsiSubtree removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)G107 # TweakPsiPhi removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)N297 # TweakPhi removed gap before (T0547)N249 # TweakPsiPhi removed gap before (T0547)E285 # TweakPsiSubtree removed gap before (T0547)Y75 # TweakPsiPhi removed gap before (T0547)E488 # TweakPsiPhi removed gap before (T0547)F318 # TweakPsiSubtree removed gap before (T0547)H233 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N11 # TweakPsiPhi removed gap before (T0547)K57 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)S485 # TweakPsiPhi removed gap before (T0547)L358 # TweakPhi removed gap before (T0547)L408 # TweakPsiSubtree removed gap before (T0547)K245 # TweakPsiPhi removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)D422 # TweakPsiPhi removed gap before (T0547)V397 # TweakPhi removed gap before (T0547)Y295 # TweakPhi removed gap before (T0547)D586 # TweakPsiSubtree removed gap before (T0547)H384 # TweakPhi removed gap before (T0547)S403 # TweakPsiSubtree removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)T482 # TweakPsiSubtree removed gap before (T0547)D40 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPsiPhi removed gap before (T0547)E125 # TweakPhi removed gap before (T0547)I317 # TweakPsiSubtree removed gap before (T0547)F498 # TweakPsiSubtree removed gap before (T0547)M261 # TweakPsiSubtree removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)E12 # TweakPsiSubtree removed gap before (T0547)P451 # TweakPsiPhi removed gap before (T0547)N18 # TweakPsiPhi removed gap before (T0547)D360 # TweakPsiPhi removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)N11 # TweakPsiPhi removed gap before (T0547)N123 # TweakPhi removed gap before (T0547)E125 # TweakPhi removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)K415 # TweakPsiPhi removed gap before (T0547)L529 # TweakPhi removed gap before (T0547)F144 # TweakPsiPhi removed gap before (T0547)A569 # TweakPhi removed gap before (T0547)L49 # TweakPhi removed gap before (T0547)I32 # TweakPsiPhi removed gap before (T0547)D466 # generation 242: best score out of 40: T0547.try1-opt2 201.56770 cost/residue, 742 clashes 0.12735 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 411 269 / 1389 = 0.19366 0.00326 ## JiggleSubtree 3 53 32 / 563 = 0.05684 0.00413 ## JiggleSegment 5 57 38 / 551 = 0.06897 0.00419 ## OptSubtree 1 0 0 / 130 = 0.00000 0.00000 ## OptSegment 0 1 1 / 264 = 0.00379 0.00133 ## OptAllSegments 0 0 0 / 124 = 0.00000 0.00000 ## ShiftSubtree 2 0 0 / 131 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 109 = 0.00000 0.00000 ## TweakPhiSubtree 73 661 392 / 1791 = 0.21887 0.00462 ## TweakPhiSegment 65 749 444 / 1670 = 0.26587 0.00488 ## TweakPsiSubtree 2 548 357 / 1768 = 0.20192 0.00463 ## TweakPsiSegment 4 898 606 / 2406 = 0.25187 0.00606 ## TweakPsiPhiSubtree 216 643 392 / 1514 = 0.25892 0.00408 ## TweakPsiPhiSegment 181 574 333 / 1384 = 0.24061 0.00343 ## TweakHbondSubtree 26 365 220 / 1327 = 0.16579 0.00355 ## TweakHbondSegment 20 430 236 / 1359 = 0.17366 0.00375 ## TweakMultimer 458 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 75 313 201 / 713 = 0.28191 0.00135 ## FixOmega 4 0 0 / 120 = 0.00000 0.00000 ## Backrub 250 343 166 / 822 = 0.20195 0.00211 ## BigBackrub 208 142 78 / 743 = 0.10498 0.00214 ## OneRotamer 0 427 212 / 2130 = 0.09953 0.00440 ## ClashingRotamer 2 3 1 / 200 = 0.00500 0.00065 ## ClusteredRotamer 21 5 3 / 185 = 0.01622 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 266 = 0.00376 0.00010 ## CloseGap 0 21 6 / 293 = 0.02048 0.00557 ## HealGap 0 15 9 / 359 = 0.02507 0.00070 ## MoveGap 0 0 0 / 125 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 258 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 131 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 246 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 125 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 594 = 0.00000 0.00000 ## CrossOver 0 0 0 / 126 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 122 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 134 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)A165 # TweakPsiSubtree removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPhi removed gap before (T0547)I556 # TweakPhi removed gap before (T0547)N601 # TweakPhi removed gap before (T0547)N425 # TweakPhi removed gap before (T0547)E240 # TweakPsiPhi removed gap before (T0547)F227 # TweakPhi removed gap before (T0547)F444 # TweakPsiPhi removed gap before (T0547)K589 # TweakPsiSubtree removed gap before (T0547)S475 # TweakPhi removed gap before (T0547)I142 # TweakPsiPhi removed gap before (T0547)Y440 # TweakPsiPhi removed gap before (T0547)A165 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPsiPhi removed gap before (T0547)S341 # TweakPsiPhi removed gap before (T0547)S445 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPsiPhi removed gap before (T0547)I388 # TweakPsiPhi removed gap before (T0547)A276 # TweakPsiPhi removed gap before (T0547)L358 # TweakPsiSubtree removed gap before (T0547)E158 # TweakPsiSubtree removed gap before (T0547)A330 # TweakPsiPhi removed gap before (T0547)N284 # TweakPsiSubtree removed gap before (T0547)K587 # TweakPhi removed gap before (T0547)G544 # TweakPsiSubtree removed gap before (T0547)D41 # TweakPsiPhi removed gap before (T0547)A263 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L332 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)T531 # TweakPhi removed gap before (T0547)I302 # TweakPsiPhi removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)I193 # TweakPsiSubtree removed gap before (T0547)L429 # TweakPsiPhi removed gap before (T0547)I15 # TweakPhi removed gap before (T0547)V336 # TweakPhi removed gap before (T0547)I62 # TweakPhi removed gap before (T0547)L292 # TweakPsiPhi removed gap before (T0547)V21 # TweakPsiPhi removed gap before (T0547)K95 # TweakPsiPhi removed gap before (T0547)D501 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L399 # TweakPhi removed gap before (T0547)S112 # TweakPsiPhi removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)Y519 # TweakPsiSubtree removed gap before (T0547)Y104 # generation 243: best score out of 40: T0547.try1-opt2 201.56091 cost/residue, 737 clashes 0.12751 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 412 269 / 1392 = 0.19325 0.00326 ## JiggleSubtree 3 53 32 / 563 = 0.05684 0.00413 ## JiggleSegment 5 57 38 / 552 = 0.06884 0.00418 ## OptSubtree 1 0 0 / 131 = 0.00000 0.00000 ## OptSegment 0 1 1 / 264 = 0.00379 0.00133 ## OptAllSegments 0 0 0 / 124 = 0.00000 0.00000 ## ShiftSubtree 2 0 0 / 131 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 110 = 0.00000 0.00000 ## TweakPhiSubtree 74 662 392 / 1795 = 0.21838 0.00461 ## TweakPhiSegment 65 753 446 / 1680 = 0.26548 0.00486 ## TweakPsiSubtree 2 549 359 / 1773 = 0.20248 0.00462 ## TweakPsiSegment 4 903 612 / 2415 = 0.25342 0.00606 ## TweakPsiPhiSubtree 216 645 394 / 1526 = 0.25819 0.00405 ## TweakPsiPhiSegment 181 576 335 / 1394 = 0.24032 0.00341 ## TweakHbondSubtree 27 366 220 / 1330 = 0.16541 0.00354 ## TweakHbondSegment 20 430 236 / 1363 = 0.17315 0.00374 ## TweakMultimer 463 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 75 315 202 / 716 = 0.28212 0.00136 ## FixOmega 4 0 0 / 120 = 0.00000 0.00000 ## Backrub 252 347 170 / 836 = 0.20335 0.00212 ## BigBackrub 209 142 78 / 748 = 0.10428 0.00213 ## OneRotamer 0 429 213 / 2142 = 0.09944 0.00439 ## ClashingRotamer 2 3 1 / 201 = 0.00498 0.00065 ## ClusteredRotamer 21 5 3 / 185 = 0.01622 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 266 = 0.00376 0.00010 ## CloseGap 0 21 6 / 293 = 0.02048 0.00557 ## HealGap 0 15 9 / 360 = 0.02500 0.00070 ## MoveGap 0 0 0 / 125 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 258 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 131 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 246 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 125 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 594 = 0.00000 0.00000 ## CrossOver 0 0 0 / 127 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 122 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 134 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)I269 # TweakPsiSubtree removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)Y565 # TweakPhi removed gap before (T0547)T559 # TweakPsiPhi removed gap before (T0547)M463 # TweakPsiSubtree removed gap before (T0547)Q281 # TweakPsiSubtree removed gap before (T0547)A119 # TweakPsiPhi removed gap before (T0547)N541 # TweakPhi removed gap before (T0547)I359 # TweakPhi removed gap before (T0547)Y122 # TweakPsiSubtree removed gap before (T0547)V547 # TweakPsiSubtree removed gap before (T0547)Q56 # TweakPhi removed gap before (T0547)L97 # TweakPsiSubtree removed gap before (T0547)E26 # TweakPhi removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)S539 # TweakPsiSubtree removed gap before (T0547)A476 # TweakPsiPhi removed gap before (T0547)V516 # TweakPsiSubtree removed gap before (T0547)E162 # TweakPsiPhi removed gap before (T0547)I23 # TweakPhi removed gap before (T0547)E115 # TweakPsiSubtree removed gap before (T0547)I34 # TweakPsiSubtree removed gap before (T0547)G45 # TweakPsiSubtree removed gap before (T0547)A536 # TweakPsiSubtree removed gap before (T0547)L378 # TweakPsiPhi removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)W194 # TweakPhi removed gap before (T0547)L468 # TweakPsiSubtree removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)K246 # TweakPsiPhi removed gap before (T0547)I254 # TweakPsiPhi removed gap before (T0547)I369 # TweakPhi removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)S368 # TweakPsiPhi removed gap before (T0547)A147 # TweakPhi removed gap before (T0547)I23 # TweakPsiSubtree removed gap before (T0547)Y366 # TweakPhi removed gap before (T0547)I319 # TweakPsiPhi removed gap before (T0547)L497 # TweakPsiSubtree removed gap before (T0547)D312 # TweakPsiSubtree removed gap before (T0547)L515 # TweakPsiPhi removed gap before (T0547)G150 # TweakPhi removed gap before (T0547)I317 # TweakPsiPhi removed gap before (T0547)I254 # TweakPsiSubtree removed gap before (T0547)I538 # TweakPsiSubtree removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)N11 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L266 # TweakPsiPhi removed gap before (T0547)L54 # TweakPsiPhi removed gap before (T0547)N404 # TweakPsiPhi removed gap before (T0547)Q520 # TweakPsiSubtree removed gap before (T0547)N373 # TweakPsiPhi removed gap before (T0547)L574 # generation 244: best score out of 40: T0547.try1-opt2 201.54510 cost/residue, 737 clashes 0.12750 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 412 269 / 1395 = 0.19283 0.00325 ## JiggleSubtree 3 53 32 / 565 = 0.05664 0.00411 ## JiggleSegment 5 57 38 / 552 = 0.06884 0.00418 ## OptSubtree 1 0 0 / 132 = 0.00000 0.00000 ## OptSegment 0 1 1 / 264 = 0.00379 0.00133 ## OptAllSegments 0 0 0 / 124 = 0.00000 0.00000 ## ShiftSubtree 2 0 0 / 131 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 111 = 0.00000 0.00000 ## TweakPhiSubtree 75 664 393 / 1804 = 0.21785 0.00460 ## TweakPhiSegment 65 754 446 / 1685 = 0.26469 0.00484 ## TweakPsiSubtree 2 551 359 / 1779 = 0.20180 0.00460 ## TweakPsiSegment 4 908 616 / 2436 = 0.25287 0.00603 ## TweakPsiPhiSubtree 217 650 396 / 1537 = 0.25764 0.00405 ## TweakPsiPhiSegment 182 579 336 / 1401 = 0.23983 0.00341 ## TweakHbondSubtree 27 366 220 / 1332 = 0.16517 0.00354 ## TweakHbondSegment 20 431 237 / 1368 = 0.17325 0.00374 ## TweakMultimer 465 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 76 317 204 / 719 = 0.28373 0.00137 ## FixOmega 4 0 0 / 121 = 0.00000 0.00000 ## Backrub 253 349 172 / 842 = 0.20428 0.00216 ## BigBackrub 209 142 78 / 751 = 0.10386 0.00212 ## OneRotamer 0 430 213 / 2149 = 0.09912 0.00437 ## ClashingRotamer 2 3 1 / 201 = 0.00498 0.00065 ## ClusteredRotamer 21 5 3 / 185 = 0.01622 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 266 = 0.00376 0.00010 ## CloseGap 0 21 6 / 294 = 0.02041 0.00555 ## HealGap 0 15 9 / 361 = 0.02493 0.00070 ## MoveGap 0 0 0 / 126 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 258 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 133 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 247 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 125 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 595 = 0.00000 0.00000 ## CrossOver 0 0 0 / 127 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 122 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 134 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)E37 # TweakPsiPhi removed gap before (T0547)I212 # TweakPsiPhi removed gap before (T0547)A476 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)F340 # TweakPsiPhi removed gap before (T0547)V397 # TweakPsiSubtree removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)A189 # TweakPhi removed gap before (T0547)K86 # TweakPsiSubtree removed gap before (T0547)A251 # TweakPhi removed gap before (T0547)E320 # TweakPhi removed gap before (T0547)G205 # TweakPsiSubtree removed gap before (T0547)N18 # TweakPsiSubtree removed gap before (T0547)F14 # TweakPsiSubtree removed gap before (T0547)I592 # TweakPsiSubtree removed gap before (T0547)Q342 # TweakPhi removed gap before (T0547)M2 # TweakPsiPhi removed gap before (T0547)A121 # TweakPsiSubtree removed gap before (T0547)S490 # TweakPhi removed gap before (T0547)G74 # TweakPhi removed gap before (T0547)K222 # TweakPhi removed gap before (T0547)G143 # TweakPhi removed gap before (T0547)L108 # TweakPhi removed gap before (T0547)H410 # TweakPsiSubtree removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)R439 # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiPhi removed gap before (T0547)V191 # TweakPhi removed gap before (T0547)V87 # TweakPsiPhi removed gap before (T0547)F318 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPhi removed gap before (T0547)K76 # TweakPsiPhi removed gap before (T0547)Q588 # TweakPsiPhi removed gap before (T0547)M463 # TweakPhi removed gap before (T0547)D393 # TweakPsiPhi removed gap before (T0547)E278 # TweakPsiPhi removed gap before (T0547)A127 # TweakPhi removed gap before (T0547)F144 # TweakPsiPhi removed gap before (T0547)I538 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L560 # TweakPsiSubtree removed gap before (T0547)G273 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)Q458 # TweakPhi removed gap before (T0547)Y396 # TweakPsiPhi removed gap before (T0547)D586 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)S188 # TweakPsiPhi removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)H329 # generation 245: best score out of 40: T0547.try1-opt2 201.50974 cost/residue, 737 clashes 0.12753 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 414 270 / 1398 = 0.19313 0.00324 ## JiggleSubtree 3 53 32 / 567 = 0.05644 0.00410 ## JiggleSegment 5 57 38 / 552 = 0.06884 0.00418 ## OptSubtree 1 0 0 / 133 = 0.00000 0.00000 ## OptSegment 0 1 1 / 264 = 0.00379 0.00133 ## OptAllSegments 0 0 0 / 126 = 0.00000 0.00000 ## ShiftSubtree 2 0 0 / 134 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 112 = 0.00000 0.00000 ## TweakPhiSubtree 75 665 394 / 1806 = 0.21816 0.00461 ## TweakPhiSegment 65 756 450 / 1698 = 0.26502 0.00482 ## TweakPsiSubtree 2 551 360 / 1781 = 0.20213 0.00460 ## TweakPsiSegment 4 914 621 / 2452 = 0.25326 0.00602 ## TweakPsiPhiSubtree 217 653 399 / 1546 = 0.25809 0.00408 ## TweakPsiPhiSegment 184 580 337 / 1408 = 0.23935 0.00339 ## TweakHbondSubtree 29 366 220 / 1333 = 0.16504 0.00353 ## TweakHbondSegment 20 432 238 / 1373 = 0.17334 0.00372 ## TweakMultimer 468 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 76 319 208 / 725 = 0.28690 0.00138 ## FixOmega 4 0 0 / 121 = 0.00000 0.00000 ## Backrub 257 354 176 / 857 = 0.20537 0.00218 ## BigBackrub 209 142 78 / 752 = 0.10372 0.00211 ## OneRotamer 0 431 213 / 2156 = 0.09879 0.00436 ## ClashingRotamer 2 3 1 / 201 = 0.00498 0.00065 ## ClusteredRotamer 21 5 3 / 185 = 0.01622 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 266 = 0.00376 0.00010 ## CloseGap 0 21 6 / 294 = 0.02041 0.00555 ## HealGap 0 15 9 / 362 = 0.02486 0.00070 ## MoveGap 0 0 0 / 127 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 258 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 133 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 248 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 125 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 596 = 0.00000 0.00000 ## CrossOver 0 0 0 / 127 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 122 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 134 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)I169 # TweakPsiPhi removed gap before (T0547)G111 # TweakPhi removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPsiPhi removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)D501 # TweakPhi removed gap before (T0547)A195 # TweakPsiPhi removed gap before (T0547)L515 # TweakPsiPhi removed gap before (T0547)I212 # TweakPsiSubtree removed gap before (T0547)N253 # TweakPsiSubtree removed gap before (T0547)K310 # TweakPsiPhi removed gap before (T0547)L523 # TweakPsiSubtree removed gap before (T0547)D562 # TweakPsiPhi removed gap before (T0547)E343 # TweakPsiPhi removed gap before (T0547)I350 # TweakPsiPhi removed gap before (T0547)I412 # TweakPsiSubtree removed gap before (T0547)D602 # TweakPsiPhi removed gap before (T0547)Q89 # TweakPsiSubtree removed gap before (T0547)D503 # TweakPhi removed gap before (T0547)K219 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)F73 # TweakPsiSubtree removed gap before (T0547)I153 # TweakPsiSubtree removed gap before (T0547)I166 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)D566 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)L420 # TweakPsiSubtree removed gap before (T0547)L100 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)H151 # TweakPhi removed gap before (T0547)M571 # TweakPhi removed gap before (T0547)V547 # TweakPsiSubtree removed gap before (T0547)D41 # TweakPsiPhi removed gap before (T0547)Q281 # TweakPhi removed gap before (T0547)D364 # TweakPsiSubtree removed gap before (T0547)A251 # TweakPhi removed gap before (T0547)W479 # TweakPsiPhi removed gap before (T0547)I417 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)E488 # TweakPsiSubtree removed gap before (T0547)L337 # TweakPsiPhi removed gap before (T0547)L523 # TweakPhi removed gap before (T0547)Y104 # TweakPsiSubtree removed gap before (T0547)I23 # TweakPsiPhi removed gap before (T0547)F453 # TweakPsiPhi removed gap before (T0547)T473 # TweakPsiSubtree removed gap before (T0547)Y290 # TweakPsiSubtree removed gap before (T0547)L234 # TweakPhi removed gap before (T0547)L557 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)V299 # TweakPhi removed gap before (T0547)G455 # TweakPhi removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)A405 # TweakPhi removed gap before (T0547)N305 # TweakPhi removed gap before (T0547)S608 # TweakPsiSubtree removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)A553 # TweakPsiSubtree removed gap before (T0547)E535 # TweakPsiSubtree removed gap before (T0547)Y255 # generation 246: best score out of 40: T0547.try1-opt2 201.49606 cost/residue, 737 clashes 0.12756 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 414 270 / 1399 = 0.19299 0.00324 ## JiggleSubtree 3 53 32 / 568 = 0.05634 0.00409 ## JiggleSegment 5 57 38 / 552 = 0.06884 0.00418 ## OptSubtree 1 0 0 / 133 = 0.00000 0.00000 ## OptSegment 0 1 1 / 264 = 0.00379 0.00133 ## OptAllSegments 0 0 0 / 126 = 0.00000 0.00000 ## ShiftSubtree 2 0 0 / 135 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 112 = 0.00000 0.00000 ## TweakPhiSubtree 75 667 395 / 1815 = 0.21763 0.00459 ## TweakPhiSegment 65 758 453 / 1705 = 0.26569 0.00482 ## TweakPsiSubtree 2 551 360 / 1787 = 0.20145 0.00459 ## TweakPsiSegment 4 919 625 / 2472 = 0.25283 0.00598 ## TweakPsiPhiSubtree 218 654 400 / 1553 = 0.25757 0.00406 ## TweakPsiPhiSegment 185 586 339 / 1417 = 0.23924 0.00339 ## TweakHbondSubtree 29 366 221 / 1338 = 0.16517 0.00352 ## TweakHbondSegment 20 434 239 / 1379 = 0.17331 0.00371 ## TweakMultimer 474 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 78 320 208 / 728 = 0.28571 0.00137 ## FixOmega 4 0 0 / 121 = 0.00000 0.00000 ## Backrub 263 357 178 / 865 = 0.20578 0.00218 ## BigBackrub 210 142 78 / 753 = 0.10359 0.00211 ## OneRotamer 0 433 214 / 2163 = 0.09894 0.00435 ## ClashingRotamer 2 3 1 / 201 = 0.00498 0.00065 ## ClusteredRotamer 21 5 3 / 185 = 0.01622 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 266 = 0.00376 0.00010 ## CloseGap 0 21 6 / 294 = 0.02041 0.00555 ## HealGap 0 15 9 / 365 = 0.02466 0.00069 ## MoveGap 0 0 0 / 127 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 259 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 133 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 249 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 126 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 597 = 0.00000 0.00000 ## CrossOver 0 0 0 / 129 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 122 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 134 = 0.00000 0.00000 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L391 # TweakPsiSubtree removed gap before (T0547)S539 # TweakPhi removed gap before (T0547)L583 # TweakPsiSubtree removed gap before (T0547)L118 # TweakPsiSubtree removed gap before (T0547)E26 # TweakPhi removed gap before (T0547)K102 # TweakPsiPhi removed gap before (T0547)E521 # TweakPhi removed gap before (T0547)E225 # TweakPsiPhi removed gap before (T0547)D501 # TweakPsiPhi removed gap before (T0547)G205 # TweakPhi removed gap before (T0547)D486 # TweakPsiSubtree removed gap before (T0547)L351 # TweakPsiPhi removed gap before (T0547)F73 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)N425 # TweakPsiSubtree removed gap before (T0547)F324 # TweakPhi removed gap before (T0547)D486 # TweakPhi removed gap before (T0547)I333 # TweakPhi removed gap before (T0547)E470 # TweakPsiPhi removed gap before (T0547)T228 # TweakPsiPhi removed gap before (T0547)M2 # TweakPsiSubtree removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)G273 # TweakPhi removed gap before (T0547)D360 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPhi removed gap before (T0547)I359 # TweakPsiPhi removed gap before (T0547)G133 # TweakPsiPhi removed gap before (T0547)K353 # TweakPsiPhi removed gap before (T0547)R39 # TweakPsiPhi removed gap before (T0547)G272 # TweakPhi removed gap before (T0547)A345 # TweakPsiPhi removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPsiPhi removed gap before (T0547)I62 # TweakPhi removed gap before (T0547)N65 # TweakPsiPhi removed gap before (T0547)F498 # TweakPhi removed gap before (T0547)D103 # TweakPhi removed gap before (T0547)E505 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPsiSubtree removed gap before (T0547)R288 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)P176 # TweakPhi removed gap before (T0547)F340 # TweakPsiPhi removed gap before (T0547)I537 # TweakPhi removed gap before (T0547)E60 # TweakPsiSubtree removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)F498 # TweakPsiPhi removed gap before (T0547)L468 # TweakPsiSubtree removed gap before (T0547)L560 # TweakPsiPhi removed gap before (T0547)I432 # TweakPsiPhi removed gap before (T0547)D558 # TweakPhi removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)N65 # TweakPsiPhi removed gap before (T0547)H384 # TweakPsiSubtree removed gap before (T0547)N404 # TweakPsiPhi removed gap before (T0547)E72 # TweakPsiPhi removed gap before (T0547)L430 # TweakPhi removed gap before (T0547)E172 # generation 247: best score out of 40: T0547.try1-opt2 201.49384 cost/residue, 737 clashes 0.12751 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 414 270 / 1400 = 0.19286 0.00324 ## JiggleSubtree 3 53 32 / 568 = 0.05634 0.00409 ## JiggleSegment 5 57 38 / 552 = 0.06884 0.00418 ## OptSubtree 1 0 0 / 133 = 0.00000 0.00000 ## OptSegment 0 1 1 / 264 = 0.00379 0.00133 ## OptAllSegments 0 0 0 / 126 = 0.00000 0.00000 ## ShiftSubtree 2 0 0 / 135 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 113 = 0.00000 0.00000 ## TweakPhiSubtree 75 668 396 / 1825 = 0.21699 0.00456 ## TweakPhiSegment 66 761 454 / 1714 = 0.26488 0.00480 ## TweakPsiSubtree 2 554 363 / 1795 = 0.20223 0.00457 ## TweakPsiSegment 4 922 627 / 2484 = 0.25242 0.00595 ## TweakPsiPhiSubtree 221 659 402 / 1563 = 0.25720 0.00405 ## TweakPsiPhiSegment 185 593 343 / 1428 = 0.24020 0.00340 ## TweakHbondSubtree 29 366 221 / 1338 = 0.16517 0.00352 ## TweakHbondSegment 20 435 240 / 1385 = 0.17329 0.00370 ## TweakMultimer 481 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 78 322 209 / 734 = 0.28474 0.00137 ## FixOmega 4 0 0 / 121 = 0.00000 0.00000 ## Backrub 266 359 179 / 873 = 0.20504 0.00217 ## BigBackrub 210 142 78 / 755 = 0.10331 0.00211 ## OneRotamer 0 435 214 / 2173 = 0.09848 0.00433 ## ClashingRotamer 2 3 1 / 201 = 0.00498 0.00065 ## ClusteredRotamer 21 5 3 / 185 = 0.01622 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 266 = 0.00376 0.00010 ## CloseGap 0 21 6 / 294 = 0.02041 0.00555 ## HealGap 0 15 9 / 366 = 0.02459 0.00069 ## MoveGap 0 0 0 / 127 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 261 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 134 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 249 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 127 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 597 = 0.00000 0.00000 ## CrossOver 0 0 0 / 130 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 122 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 134 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)A327 # TweakPsiSubtree removed gap before (T0547)N528 # TweakPsiPhi removed gap before (T0547)G199 # TweakPhi removed gap before (T0547)G111 # TweakPsiPhi removed gap before (T0547)D501 # TweakPhi removed gap before (T0547)K219 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A345 # TweakPsiPhi removed gap before (T0547)Q281 # TweakPsiSubtree removed gap before (T0547)G517 # TweakPsiPhi removed gap before (T0547)Y519 # TweakPhi removed gap before (T0547)D501 # TweakPsiSubtree removed gap before (T0547)L606 # TweakPhi removed gap before (T0547)E535 # TweakPsiPhi removed gap before (T0547)D501 # TweakPsiSubtree removed gap before (T0547)E294 # TweakPsiSubtree removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)A195 # TweakPsiSubtree removed gap before (T0547)I254 # TweakPsiPhi removed gap before (T0547)H233 # TweakPsiPhi removed gap before (T0547)L332 # TweakPsiPhi removed gap before (T0547)V82 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPhi removed gap before (T0547)K175 # TweakPsiSubtree removed gap before (T0547)N96 # TweakPsiPhi removed gap before (T0547)M261 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L420 # TweakPsiPhi removed gap before (T0547)E308 # TweakPsiPhi removed gap before (T0547)V442 # TweakPsiPhi removed gap before (T0547)N11 # TweakPsiSubtree removed gap before (T0547)K589 # TweakPsiPhi removed gap before (T0547)L275 # TweakPsiSubtree removed gap before (T0547)A296 # TweakPsiPhi removed gap before (T0547)L598 # TweakPhi removed gap before (T0547)K367 # TweakPsiSubtree removed gap before (T0547)S490 # TweakPsiPhi removed gap before (T0547)F93 # TweakPhi removed gap before (T0547)E576 # TweakPsiSubtree removed gap before (T0547)Y75 # TweakPsiSubtree removed gap before (T0547)I6 # TweakPsiPhi removed gap before (T0547)A330 # TweakPhi removed gap before (T0547)D383 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Q433 # TweakPsiSubtree removed gap before (T0547)N123 # TweakPsiPhi removed gap before (T0547)I238 # TweakPsiSubtree removed gap before (T0547)E220 # TweakPsiPhi removed gap before (T0547)G544 # TweakPsiPhi removed gap before (T0547)N289 # TweakPsiSubtree removed gap before (T0547)D586 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)P128 # TweakPsiPhi removed gap before (T0547)G199 # TweakPhi removed gap before (T0547)N601 # TweakPsiPhi removed gap before (T0547)A165 # TweakPsiPhi removed gap before (T0547)K95 # TweakPsiPhi removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)D452 # TweakPsiSubtree removed gap before (T0547)H568 # TweakPhi removed gap before (T0547)Q281 # TweakPhi removed gap before (T0547)N603 # TweakPhi removed gap before (T0547)M229 # generation 248: best score out of 40: T0547.try1-opt2 201.40379 cost/residue, 731 clashes 0.12774 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 414 270 / 1402 = 0.19258 0.00324 ## JiggleSubtree 3 53 32 / 568 = 0.05634 0.00409 ## JiggleSegment 5 57 38 / 553 = 0.06872 0.00417 ## OptSubtree 1 0 0 / 134 = 0.00000 0.00000 ## OptSegment 0 1 1 / 265 = 0.00377 0.00132 ## OptAllSegments 0 0 0 / 126 = 0.00000 0.00000 ## ShiftSubtree 2 0 0 / 135 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 113 = 0.00000 0.00000 ## TweakPhiSubtree 76 670 397 / 1834 = 0.21647 0.00454 ## TweakPhiSegment 67 766 459 / 1723 = 0.26640 0.00487 ## TweakPsiSubtree 2 556 363 / 1801 = 0.20155 0.00455 ## TweakPsiSegment 4 924 628 / 2497 = 0.25150 0.00593 ## TweakPsiPhiSubtree 222 664 407 / 1577 = 0.25808 0.00405 ## TweakPsiPhiSegment 185 599 348 / 1438 = 0.24200 0.00340 ## TweakHbondSubtree 29 367 222 / 1343 = 0.16530 0.00352 ## TweakHbondSegment 20 435 241 / 1387 = 0.17376 0.00370 ## TweakMultimer 486 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 78 323 210 / 738 = 0.28455 0.00137 ## FixOmega 4 0 0 / 121 = 0.00000 0.00000 ## Backrub 270 360 180 / 883 = 0.20385 0.00216 ## BigBackrub 210 143 78 / 757 = 0.10304 0.00210 ## OneRotamer 0 436 214 / 2180 = 0.09817 0.00431 ## ClashingRotamer 2 3 1 / 201 = 0.00498 0.00065 ## ClusteredRotamer 21 5 3 / 185 = 0.01622 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 266 = 0.00376 0.00010 ## CloseGap 0 21 6 / 294 = 0.02041 0.00555 ## HealGap 0 15 9 / 366 = 0.02459 0.00069 ## MoveGap 0 0 0 / 127 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 262 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 134 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 250 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 127 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 598 = 0.00000 0.00000 ## CrossOver 0 0 0 / 130 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 122 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 135 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)G19 # TweakPhi removed gap before (T0547)I432 # TweakPhi removed gap before (T0547)S208 # TweakPsiSubtree removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)I157 # TweakPsiSubtree removed gap before (T0547)L49 # TweakPsiSubtree removed gap before (T0547)K415 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)F444 # TweakPhi removed gap before (T0547)V442 # TweakPhi removed gap before (T0547)M525 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L606 # TweakPsiPhi removed gap before (T0547)S280 # TweakPsiPhi removed gap before (T0547)G101 # TweakPsiPhi removed gap before (T0547)I556 # TweakPhi removed gap before (T0547)L303 # TweakPsiPhi removed gap before (T0547)L224 # TweakPhi removed gap before (T0547)D316 # TweakPhi removed gap before (T0547)H379 # TweakPsiPhi removed gap before (T0547)G604 # TweakPhi removed gap before (T0547)D168 # TweakPsiPhi removed gap before (T0547)G190 # TweakPhi removed gap before (T0547)L223 # TweakPsiSubtree removed gap before (T0547)G273 # TweakPsiPhi removed gap before (T0547)L49 # TweakPsiPhi removed gap before (T0547)L108 # TweakPhi removed gap before (T0547)R259 # TweakPsiSubtree removed gap before (T0547)T413 # TweakPsiPhi removed gap before (T0547)E220 # TweakPsiPhi removed gap before (T0547)L97 # TweakPsiPhi removed gap before (T0547)D380 # TweakPsiPhi removed gap before (T0547)L223 # TweakPsiSubtree removed gap before (T0547)L139 # TweakPsiPhi removed gap before (T0547)L303 # TweakPhi removed gap before (T0547)G42 # TweakPsiSubtree removed gap before (T0547)A296 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)E561 # TweakPsiSubtree removed gap before (T0547)G111 # TweakPsiPhi removed gap before (T0547)V584 # TweakPhi removed gap before (T0547)D422 # TweakPsiPhi removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)Y83 # TweakPsiSubtree removed gap before (T0547)D484 # TweakPhi removed gap before (T0547)L600 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K493 # TweakPhi removed gap before (T0547)K36 # TweakPhi removed gap before (T0547)R39 # TweakPsiPhi removed gap before (T0547)L218 # TweakPhi removed gap before (T0547)K222 # TweakPhi removed gap before (T0547)R288 # generation 249: best score out of 40: T0547.try1-opt2 201.40210 cost/residue, 731 clashes 0.12774 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 416 272 / 1409 = 0.19304 0.00322 ## JiggleSubtree 3 53 32 / 568 = 0.05634 0.00409 ## JiggleSegment 5 57 38 / 553 = 0.06872 0.00417 ## OptSubtree 1 0 0 / 134 = 0.00000 0.00000 ## OptSegment 0 1 1 / 265 = 0.00377 0.00132 ## OptAllSegments 0 0 0 / 126 = 0.00000 0.00000 ## ShiftSubtree 2 0 0 / 135 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 113 = 0.00000 0.00000 ## TweakPhiSubtree 76 671 398 / 1842 = 0.21607 0.00453 ## TweakPhiSegment 67 771 464 / 1736 = 0.26728 0.00485 ## TweakPsiSubtree 2 557 364 / 1807 = 0.20144 0.00455 ## TweakPsiSegment 4 926 629 / 2504 = 0.25120 0.00594 ## TweakPsiPhiSubtree 224 669 411 / 1586 = 0.25914 0.00409 ## TweakPsiPhiSegment 186 600 349 / 1446 = 0.24136 0.00338 ## TweakHbondSubtree 29 368 223 / 1348 = 0.16543 0.00350 ## TweakHbondSegment 20 435 241 / 1391 = 0.17326 0.00369 ## TweakMultimer 488 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 79 329 217 / 746 = 0.29088 0.00139 ## FixOmega 4 0 0 / 121 = 0.00000 0.00000 ## Backrub 273 365 184 / 896 = 0.20536 0.00217 ## BigBackrub 210 143 78 / 759 = 0.10277 0.00209 ## OneRotamer 0 436 214 / 2187 = 0.09785 0.00430 ## ClashingRotamer 2 3 1 / 201 = 0.00498 0.00065 ## ClusteredRotamer 21 5 3 / 185 = 0.01622 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 266 = 0.00376 0.00010 ## CloseGap 0 21 6 / 294 = 0.02041 0.00555 ## HealGap 0 15 9 / 367 = 0.02452 0.00069 ## MoveGap 0 0 0 / 127 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 263 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 135 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 250 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 127 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 598 = 0.00000 0.00000 ## CrossOver 0 0 0 / 130 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 122 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 135 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)N179 # TweakPhi removed gap before (T0547)H591 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPsiSubtree removed gap before (T0547)L139 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPsiPhi removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)E72 # TweakPsiPhi removed gap before (T0547)I462 # TweakPsiSubtree removed gap before (T0547)K286 # TweakPsiSubtree removed gap before (T0547)L118 # TweakPsiPhi removed gap before (T0547)A214 # TweakPsiPhi removed gap before (T0547)H591 # TweakPhi removed gap before (T0547)S381 # TweakPsiPhi removed gap before (T0547)V215 # TweakPsiPhi removed gap before (T0547)Y295 # TweakPsiPhi removed gap before (T0547)A326 # TweakPsiPhi removed gap before (T0547)R293 # TweakPsiSubtree removed gap before (T0547)S236 # TweakPhi removed gap before (T0547)G487 # TweakPsiPhi removed gap before (T0547)D380 # TweakPhi removed gap before (T0547)E346 # TweakPhi removed gap before (T0547)Q424 # TweakPsiSubtree removed gap before (T0547)Q281 # TweakPsiSubtree removed gap before (T0547)V584 # TweakPsiSubtree removed gap before (T0547)C22 # TweakPhi removed gap before (T0547)T239 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)G64 # TweakPsiPhi removed gap before (T0547)T473 # TweakPsiPhi removed gap before (T0547)I609 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)E164 # TweakPhi removed gap before (T0547)I538 # TweakPsiSubtree removed gap before (T0547)T559 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)V331 # TweakPsiSubtree removed gap before (T0547)A276 # TweakPsiPhi removed gap before (T0547)L275 # TweakPsiSubtree removed gap before (T0547)V611 # TweakPsiPhi removed gap before (T0547)E507 # TweakPsiPhi removed gap before (T0547)E507 # TweakPhi removed gap before (T0547)D480 # TweakPsiPhi removed gap before (T0547)A30 # TweakPsiSubtree removed gap before (T0547)P315 # TweakPhi removed gap before (T0547)S403 # TweakPsiPhi removed gap before (T0547)L163 # TweakPhi removed gap before (T0547)E240 # TweakPsiSubtree removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)T390 # TweakPsiSubtree removed gap before (T0547)P496 # TweakPhi removed gap before (T0547)L598 # TweakPsiPhi removed gap before (T0547)E546 # TweakPsiSubtree removed gap before (T0547)L100 # TweakPhi removed gap before (T0547)N425 # TweakPhi removed gap before (T0547)D469 # TweakPhi removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)E37 # TweakPsiSubtree removed gap before (T0547)G512 # TweakPhi removed gap before (T0547)S188 # TweakPsiSubtree removed gap before (T0547)L118 # TweakPsiPhi removed gap before (T0547)G273 # generation 250: best score out of 40: T0547.try1-opt2 201.38489 cost/residue, 733 clashes 0.12755 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 416 273 / 1412 = 0.19334 0.00323 ## JiggleSubtree 3 53 32 / 569 = 0.05624 0.00409 ## JiggleSegment 5 57 38 / 553 = 0.06872 0.00417 ## OptSubtree 1 0 0 / 134 = 0.00000 0.00000 ## OptSegment 0 1 1 / 267 = 0.00375 0.00131 ## OptAllSegments 0 0 0 / 126 = 0.00000 0.00000 ## ShiftSubtree 2 0 0 / 135 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 113 = 0.00000 0.00000 ## TweakPhiSubtree 76 673 399 / 1846 = 0.21614 0.00452 ## TweakPhiSegment 67 776 468 / 1751 = 0.26728 0.00484 ## TweakPsiSubtree 2 558 365 / 1811 = 0.20155 0.00455 ## TweakPsiSegment 4 929 631 / 2521 = 0.25030 0.00590 ## TweakPsiPhiSubtree 228 674 413 / 1597 = 0.25861 0.00407 ## TweakPsiPhiSegment 186 605 353 / 1455 = 0.24261 0.00340 ## TweakHbondSubtree 29 371 224 / 1355 = 0.16531 0.00350 ## TweakHbondSegment 20 435 242 / 1394 = 0.17360 0.00370 ## TweakMultimer 490 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 79 332 220 / 753 = 0.29216 0.00139 ## FixOmega 4 0 0 / 122 = 0.00000 0.00000 ## Backrub 276 366 184 / 901 = 0.20422 0.00216 ## BigBackrub 210 143 78 / 759 = 0.10277 0.00209 ## OneRotamer 0 438 214 / 2194 = 0.09754 0.00429 ## ClashingRotamer 2 3 1 / 201 = 0.00498 0.00065 ## ClusteredRotamer 21 5 3 / 185 = 0.01622 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 267 = 0.00375 0.00010 ## CloseGap 0 21 6 / 294 = 0.02041 0.00555 ## HealGap 0 15 9 / 367 = 0.02452 0.00069 ## MoveGap 0 0 0 / 127 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 263 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 135 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 251 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 127 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 600 = 0.00000 0.00000 ## CrossOver 0 0 0 / 130 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 122 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 135 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)D40 # TweakPhi removed gap before (T0547)L365 # TweakPhi removed gap before (T0547)F282 # TweakPhi removed gap before (T0547)G487 # TweakPsiSubtree removed gap before (T0547)N132 # TweakPsiSubtree removed gap before (T0547)N297 # TweakPsiSubtree removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)I369 # TweakPsiPhi removed gap before (T0547)K36 # TweakPsiSubtree removed gap before (T0547)K28 # TweakPsiPhi removed gap before (T0547)V277 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)N459 # TweakPsiSubtree removed gap before (T0547)K582 # TweakPsiSubtree removed gap before (T0547)L303 # TweakPsiPhi removed gap before (T0547)E386 # TweakPhi removed gap before (T0547)H329 # TweakPsiPhi removed gap before (T0547)I193 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)K76 # TweakPhi removed gap before (T0547)K353 # TweakPhi removed gap before (T0547)E115 # TweakPsiSubtree removed gap before (T0547)L365 # TweakPhi removed gap before (T0547)K68 # TweakPhi removed gap before (T0547)T534 # TweakPhi removed gap before (T0547)E595 # TweakPsiSubtree removed gap before (T0547)L389 # TweakPsiSubtree removed gap before (T0547)E125 # TweakPhi removed gap before (T0547)S321 # TweakPhi removed gap before (T0547)E338 # TweakPsiPhi removed gap before (T0547)I592 # TweakPsiPhi removed gap before (T0547)N580 # TweakPhi removed gap before (T0547)N425 # TweakPsiPhi removed gap before (T0547)V94 # TweakPhi removed gap before (T0547)D393 # TweakPhi removed gap before (T0547)S387 # TweakPsiSubtree removed gap before (T0547)Q400 # TweakPsiPhi removed gap before (T0547)L497 # TweakPsiPhi removed gap before (T0547)D434 # TweakPhi removed gap before (T0547)N13 # TweakPhi removed gap before (T0547)I157 # TweakPsiSubtree removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)F447 # TweakPhi removed gap before (T0547)E12 # TweakPsiSubtree removed gap before (T0547)D434 # TweakPhi removed gap before (T0547)K352 # TweakPsiPhi removed gap before (T0547)V82 # TweakPsiSubtree removed gap before (T0547)K20 # TweakPhi removed gap before (T0547)I432 # TweakPsiPhi removed gap before (T0547)A195 # TweakPsiSubtree removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)Q56 # TweakPsiPhi removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)I369 # TweakPhi removed gap before (T0547)E338 # generation 251: best score out of 40: T0547.try1-opt2 201.32513 cost/residue, 730 clashes 0.12788 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 416 274 / 1417 = 0.19337 0.00322 ## JiggleSubtree 3 53 32 / 569 = 0.05624 0.00409 ## JiggleSegment 5 57 38 / 553 = 0.06872 0.00417 ## OptSubtree 1 0 0 / 134 = 0.00000 0.00000 ## OptSegment 0 1 1 / 268 = 0.00373 0.00131 ## OptAllSegments 0 0 0 / 126 = 0.00000 0.00000 ## ShiftSubtree 2 0 0 / 136 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 114 = 0.00000 0.00000 ## TweakPhiSubtree 76 673 399 / 1851 = 0.21556 0.00450 ## TweakPhiSegment 67 784 474 / 1769 = 0.26795 0.00488 ## TweakPsiSubtree 2 558 365 / 1817 = 0.20088 0.00453 ## TweakPsiSegment 4 930 632 / 2532 = 0.24961 0.00591 ## TweakPsiPhiSubtree 231 678 417 / 1606 = 0.25965 0.00407 ## TweakPsiPhiSegment 188 607 355 / 1462 = 0.24282 0.00340 ## TweakHbondSubtree 29 371 224 / 1358 = 0.16495 0.00349 ## TweakHbondSegment 20 436 243 / 1401 = 0.17345 0.00368 ## TweakMultimer 494 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 79 336 223 / 761 = 0.29304 0.00138 ## FixOmega 4 0 0 / 122 = 0.00000 0.00000 ## Backrub 278 373 187 / 912 = 0.20504 0.00214 ## BigBackrub 210 143 78 / 759 = 0.10277 0.00209 ## OneRotamer 0 439 215 / 2197 = 0.09786 0.00428 ## ClashingRotamer 2 3 1 / 202 = 0.00495 0.00065 ## ClusteredRotamer 21 5 3 / 185 = 0.01622 0.00064 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 267 = 0.00375 0.00010 ## CloseGap 0 21 6 / 294 = 0.02041 0.00555 ## HealGap 0 15 9 / 367 = 0.02452 0.00069 ## MoveGap 0 0 0 / 127 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 263 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 136 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 251 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 127 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 601 = 0.00000 0.00000 ## CrossOver 0 0 0 / 130 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 122 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 136 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)V397 # TweakPsiPhi removed gap before (T0547)S197 # TweakPhi removed gap before (T0547)N179 # TweakPhi removed gap before (T0547)K71 # TweakPsiPhi removed gap before (T0547)E37 # TweakPsiSubtree removed gap before (T0547)N355 # TweakPsiPhi removed gap before (T0547)E125 # TweakPsiPhi removed gap before (T0547)A296 # TweakPsiPhi removed gap before (T0547)I592 # TweakPsiSubtree removed gap before (T0547)A330 # TweakPsiSubtree removed gap before (T0547)D316 # TweakPsiSubtree removed gap before (T0547)E225 # TweakPsiSubtree removed gap before (T0547)L523 # TweakPhi removed gap before (T0547)H591 # TweakPhi removed gap before (T0547)K86 # TweakPsiPhi removed gap before (T0547)Q458 # TweakPhi removed gap before (T0547)R70 # TweakPsiPhi removed gap before (T0547)H532 # TweakPsiPhi removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)I32 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)I23 # TweakPsiSubtree removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)K414 # TweakPhi removed gap before (T0547)E561 # TweakPhi removed gap before (T0547)L108 # TweakPsiPhi removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)V436 # TweakPhi removed gap before (T0547)N253 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPhi removed gap before (T0547)F340 # TweakPsiPhi removed gap before (T0547)E561 # TweakPsiPhi removed gap before (T0547)L362 # TweakPsiSubtree removed gap before (T0547)Y509 # TweakPhi removed gap before (T0547)A147 # TweakPhi removed gap before (T0547)V522 # TweakPsiSubtree removed gap before (T0547)E138 # TweakPhi removed gap before (T0547)L358 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPhi removed gap before (T0547)N13 # TweakPsiPhi removed gap before (T0547)Q342 # TweakPsiSubtree removed gap before (T0547)D168 # TweakPsiPhi removed gap before (T0547)F73 # TweakPsiSubtree removed gap before (T0547)Q448 # TweakPsiSubtree removed gap before (T0547)I23 # TweakPsiPhi removed gap before (T0547)K203 # TweakPsiPhi removed gap before (T0547)K20 # TweakPhi removed gap before (T0547)S236 # TweakPsiPhi removed gap before (T0547)G487 # TweakPhi removed gap before (T0547)N123 # TweakPsiSubtree removed gap before (T0547)H500 # generation 252: best score out of 40: T0547.try1-opt2 201.29202 cost/residue, 727 clashes 0.12778 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 417 276 / 1423 = 0.19396 0.00322 ## JiggleSubtree 3 53 32 / 569 = 0.05624 0.00409 ## JiggleSegment 5 57 38 / 554 = 0.06859 0.00416 ## OptSubtree 1 0 0 / 134 = 0.00000 0.00000 ## OptSegment 0 1 1 / 268 = 0.00373 0.00131 ## OptAllSegments 0 0 0 / 126 = 0.00000 0.00000 ## ShiftSubtree 2 0 0 / 137 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 114 = 0.00000 0.00000 ## TweakPhiSubtree 76 676 400 / 1854 = 0.21575 0.00451 ## TweakPhiSegment 69 791 478 / 1782 = 0.26824 0.00492 ## TweakPsiSubtree 2 560 367 / 1824 = 0.20121 0.00455 ## TweakPsiSegment 4 934 633 / 2544 = 0.24882 0.00589 ## TweakPsiPhiSubtree 231 679 418 / 1613 = 0.25914 0.00406 ## TweakPsiPhiSegment 189 610 358 / 1477 = 0.24238 0.00339 ## TweakHbondSubtree 29 371 224 / 1360 = 0.16471 0.00349 ## TweakHbondSegment 20 437 244 / 1406 = 0.17354 0.00367 ## TweakMultimer 495 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 79 339 225 / 772 = 0.29145 0.00137 ## FixOmega 4 0 0 / 122 = 0.00000 0.00000 ## Backrub 278 375 188 / 915 = 0.20546 0.00214 ## BigBackrub 210 143 78 / 761 = 0.10250 0.00209 ## OneRotamer 0 439 215 / 2202 = 0.09764 0.00427 ## ClashingRotamer 2 3 1 / 202 = 0.00495 0.00065 ## ClusteredRotamer 21 5 3 / 186 = 0.01613 0.00063 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 267 = 0.00375 0.00010 ## CloseGap 0 21 6 / 294 = 0.02041 0.00555 ## HealGap 0 15 9 / 368 = 0.02446 0.00068 ## MoveGap 0 0 0 / 127 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 263 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 137 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 252 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 127 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 603 = 0.00000 0.00000 ## CrossOver 0 0 0 / 130 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 123 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 136 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)I592 # TweakPsiPhi removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)E535 # TweakPhi removed gap before (T0547)F144 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPsiSubtree removed gap before (T0547)L139 # TweakPsiPhi removed gap before (T0547)S445 # TweakPsiSubtree removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)L116 # TweakPsiPhi removed gap before (T0547)L38 # TweakPhi removed gap before (T0547)F444 # TweakPsiPhi removed gap before (T0547)D3 # TweakPsiPhi removed gap before (T0547)E115 # TweakPhi removed gap before (T0547)S368 # TweakPsiPhi removed gap before (T0547)N289 # TweakPhi removed gap before (T0547)L394 # TweakPhi removed gap before (T0547)S581 # TweakPsiSubtree removed gap before (T0547)A119 # TweakPsiSubtree removed gap before (T0547)M450 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPhi removed gap before (T0547)K17 # TweakPhi removed gap before (T0547)K506 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)S372 # TweakPhi removed gap before (T0547)Y605 # TweakPhi removed gap before (T0547)I129 # TweakPhi removed gap before (T0547)I241 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPhi removed gap before (T0547)H591 # TweakPhi removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)L420 # TweakPsiSubtree removed gap before (T0547)G322 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPsiSubtree removed gap before (T0547)N404 # TweakPhi removed gap before (T0547)K28 # TweakPsiSubtree removed gap before (T0547)P533 # TweakPsiSubtree removed gap before (T0547)L418 # TweakPsiSubtree removed gap before (T0547)S112 # TweakPhi removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)C483 # TweakPsiPhi removed gap before (T0547)T534 # TweakPhi removed gap before (T0547)K506 # TweakPhi removed gap before (T0547)A263 # TweakPsiPhi removed gap before (T0547)W194 # TweakPhi removed gap before (T0547)L223 # TweakPsiPhi removed gap before (T0547)K68 # TweakPhi removed gap before (T0547)D422 # TweakPhi removed gap before (T0547)H231 # TweakPsiPhi removed gap before (T0547)A268 # TweakPsiPhi removed gap before (T0547)S208 # TweakPsiPhi removed gap before (T0547)K352 # TweakPsiSubtree removed gap before (T0547)I269 # TweakPsiSubtree removed gap before (T0547)V547 # TweakPsiSubtree removed gap before (T0547)E314 # generation 253: best score out of 40: T0547.try1-opt2 201.27608 cost/residue, 727 clashes 0.12778 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 418 276 / 1425 = 0.19368 0.00321 ## JiggleSubtree 3 53 32 / 570 = 0.05614 0.00408 ## JiggleSegment 5 57 38 / 556 = 0.06835 0.00415 ## OptSubtree 1 0 0 / 134 = 0.00000 0.00000 ## OptSegment 0 1 1 / 268 = 0.00373 0.00131 ## OptAllSegments 0 0 0 / 127 = 0.00000 0.00000 ## ShiftSubtree 2 0 0 / 137 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 114 = 0.00000 0.00000 ## TweakPhiSubtree 76 680 400 / 1862 = 0.21482 0.00449 ## TweakPhiSegment 70 800 482 / 1802 = 0.26748 0.00490 ## TweakPsiSubtree 2 561 367 / 1833 = 0.20022 0.00452 ## TweakPsiSegment 4 935 634 / 2554 = 0.24824 0.00586 ## TweakPsiPhiSubtree 231 681 419 / 1618 = 0.25896 0.00405 ## TweakPsiPhiSegment 189 613 359 / 1486 = 0.24159 0.00338 ## TweakHbondSubtree 29 373 224 / 1365 = 0.16410 0.00347 ## TweakHbondSegment 20 437 244 / 1409 = 0.17317 0.00366 ## TweakMultimer 496 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 79 344 227 / 781 = 0.29065 0.00137 ## FixOmega 4 0 0 / 122 = 0.00000 0.00000 ## Backrub 280 375 188 / 919 = 0.20457 0.00213 ## BigBackrub 210 143 78 / 763 = 0.10223 0.00208 ## OneRotamer 0 439 215 / 2208 = 0.09737 0.00426 ## ClashingRotamer 2 3 1 / 202 = 0.00495 0.00065 ## ClusteredRotamer 21 5 3 / 187 = 0.01604 0.00063 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 267 = 0.00375 0.00010 ## CloseGap 0 21 6 / 294 = 0.02041 0.00555 ## HealGap 0 15 9 / 368 = 0.02446 0.00068 ## MoveGap 0 0 0 / 128 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 263 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 137 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 252 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 127 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 604 = 0.00000 0.00000 ## CrossOver 0 0 0 / 130 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 124 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 136 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)L266 # TweakPsiPhi removed gap before (T0547)V191 # TweakPsiSubtree removed gap before (T0547)A263 # TweakPhi removed gap before (T0547)E12 # TweakPhi removed gap before (T0547)Y545 # TweakPsiSubtree removed gap before (T0547)A263 # TweakPsiPhi removed gap before (T0547)D422 # TweakPsiSubtree removed gap before (T0547)T534 # TweakPhi removed gap before (T0547)Y366 # TweakPhi removed gap before (T0547)G421 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPhi removed gap before (T0547)I142 # TweakPsiSubtree removed gap before (T0547)L258 # TweakPhi removed gap before (T0547)L266 # TweakPsiSubtree removed gap before (T0547)E26 # TweakPhi removed gap before (T0547)A30 # TweakPsiPhi removed gap before (T0547)G77 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPsiSubtree removed gap before (T0547)N541 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)K196 # TweakPhi removed gap before (T0547)N541 # TweakPhi removed gap before (T0547)L155 # TweakPsiSubtree removed gap before (T0547)I556 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N443 # TweakPsiPhi removed gap before (T0547)L118 # TweakPhi removed gap before (T0547)E308 # TweakPsiSubtree removed gap before (T0547)L339 # TweakPsiSubtree removed gap before (T0547)M571 # TweakPsiSubtree removed gap before (T0547)G77 # TweakPsiPhi removed gap before (T0547)G192 # TweakPsiSubtree removed gap before (T0547)G517 # TweakPhi removed gap before (T0547)G322 # TweakPhi removed gap before (T0547)A195 # TweakPhi removed gap before (T0547)A30 # TweakPsiPhi removed gap before (T0547)L583 # TweakPhi removed gap before (T0547)G45 # TweakPhi removed gap before (T0547)L275 # TweakPhi removed gap before (T0547)G252 # TweakPsiPhi removed gap before (T0547)N404 # TweakPsiSubtree removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)V331 # TweakPsiPhi removed gap before (T0547)E164 # TweakPhi removed gap before (T0547)D486 # TweakPhi removed gap before (T0547)S287 # TweakPsiPhi removed gap before (T0547)A326 # TweakPhi removed gap before (T0547)R173 # TweakPsiPhi removed gap before (T0547)D566 # TweakPsiSubtree removed gap before (T0547)L217 # TweakPsiPhi removed gap before (T0547)L408 # TweakPhi removed gap before (T0547)G235 # TweakPhi removed gap before (T0547)Q226 # TweakPsiSubtree removed gap before (T0547)T473 # TweakPsiPhi removed gap before (T0547)S539 # TweakPhi removed gap before (T0547)E314 # generation 254: best score out of 40: T0547.try1-opt2 201.26891 cost/residue, 726 clashes 0.12778 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 419 276 / 1428 = 0.19328 0.00321 ## JiggleSubtree 3 54 32 / 571 = 0.05604 0.00407 ## JiggleSegment 5 57 38 / 556 = 0.06835 0.00415 ## OptSubtree 1 0 0 / 135 = 0.00000 0.00000 ## OptSegment 0 1 1 / 268 = 0.00373 0.00131 ## OptAllSegments 0 0 0 / 127 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 137 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 115 = 0.00000 0.00000 ## TweakPhiSubtree 76 682 401 / 1869 = 0.21455 0.00448 ## TweakPhiSegment 71 807 485 / 1822 = 0.26619 0.00485 ## TweakPsiSubtree 3 563 368 / 1840 = 0.20000 0.00451 ## TweakPsiSegment 4 939 637 / 2568 = 0.24805 0.00585 ## TweakPsiPhiSubtree 235 683 419 / 1622 = 0.25832 0.00404 ## TweakPsiPhiSegment 190 616 361 / 1494 = 0.24163 0.00336 ## TweakHbondSubtree 29 373 224 / 1370 = 0.16350 0.00346 ## TweakHbondSegment 20 437 244 / 1413 = 0.17268 0.00365 ## TweakMultimer 498 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 79 346 229 / 787 = 0.29098 0.00137 ## FixOmega 4 0 0 / 122 = 0.00000 0.00000 ## Backrub 281 379 189 / 928 = 0.20366 0.00212 ## BigBackrub 210 143 78 / 764 = 0.10209 0.00208 ## OneRotamer 0 439 215 / 2213 = 0.09715 0.00425 ## ClashingRotamer 2 3 1 / 202 = 0.00495 0.00065 ## ClusteredRotamer 21 5 3 / 187 = 0.01604 0.00063 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 267 = 0.00375 0.00010 ## CloseGap 0 21 6 / 294 = 0.02041 0.00555 ## HealGap 0 15 9 / 368 = 0.02446 0.00068 ## MoveGap 0 0 0 / 128 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 263 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 137 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 252 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 127 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 606 = 0.00000 0.00000 ## CrossOver 0 0 0 / 130 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 124 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 138 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)H410 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)F599 # TweakPsiPhi removed gap before (T0547)Y295 # TweakPsiSubtree removed gap before (T0547)N141 # TweakPsiSubtree removed gap before (T0547)N105 # TweakPhi removed gap before (T0547)E285 # TweakPsiPhi removed gap before (T0547)A345 # TweakPsiSubtree removed gap before (T0547)Q448 # TweakPsiPhi removed gap before (T0547)N289 # TweakPhi removed gap before (T0547)K352 # TweakPsiSubtree removed gap before (T0547)G455 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Y255 # TweakPsiPhi removed gap before (T0547)I556 # TweakPsiPhi removed gap before (T0547)R50 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)G273 # TweakPhi removed gap before (T0547)G190 # TweakPhi removed gap before (T0547)G126 # TweakPhi removed gap before (T0547)R402 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Y491 # TweakPhi removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)F599 # TweakPhi removed gap before (T0547)N179 # TweakPhi removed gap before (T0547)Y122 # TweakPsiPhi removed gap before (T0547)K370 # TweakPhi removed gap before (T0547)N13 # TweakPhi removed gap before (T0547)H379 # TweakPsiPhi removed gap before (T0547)G512 # TweakPsiPhi removed gap before (T0547)A268 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)L118 # TweakPsiSubtree removed gap before (T0547)D486 # TweakPsiSubtree removed gap before (T0547)A326 # TweakPsiPhi removed gap before (T0547)L339 # TweakPhi removed gap before (T0547)D103 # TweakPsiSubtree removed gap before (T0547)G19 # TweakPhi removed gap before (T0547)R288 # TweakPsiSubtree removed gap before (T0547)I551 # TweakPsiPhi removed gap before (T0547)K260 # TweakPhi removed gap before (T0547)N61 # TweakPsiPhi removed gap before (T0547)G272 # TweakPhi removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)N284 # TweakPsiSubtree removed gap before (T0547)K28 # TweakPsiPhi removed gap before (T0547)G199 # TweakPsiSubtree removed gap before (T0547)D316 # TweakPhi removed gap before (T0547)S475 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)A296 # TweakPsiSubtree removed gap before (T0547)M571 # TweakPsiPhi removed gap before (T0547)K526 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)H532 # TweakPsiPhi removed gap before (T0547)N141 # TweakPhi removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)L497 # TweakPsiSubtree removed gap before (T0547)E546 # TweakPhi removed gap before (T0547)K57 # TweakPhi removed gap before (T0547)Q237 # TweakPsiSubtree removed gap before (T0547)D383 # TweakPsiSubtree removed gap before (T0547)F66 # TweakPhi removed gap before (T0547)A374 # TweakPsiPhi removed gap before (T0547)K68 # TweakPhi removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)A327 # generation 255: best score out of 40: T0547.try1-opt2 201.14087 cost/residue, 725 clashes 0.12835 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 421 278 / 1434 = 0.19386 0.00321 ## JiggleSubtree 3 55 33 / 572 = 0.05769 0.00433 ## JiggleSegment 5 57 38 / 556 = 0.06835 0.00415 ## OptSubtree 1 0 0 / 135 = 0.00000 0.00000 ## OptSegment 0 1 1 / 268 = 0.00373 0.00131 ## OptAllSegments 0 0 0 / 127 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 137 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 116 = 0.00000 0.00000 ## TweakPhiSubtree 76 686 404 / 1880 = 0.21489 0.00449 ## TweakPhiSegment 72 808 486 / 1838 = 0.26442 0.00481 ## TweakPsiSubtree 3 564 368 / 1851 = 0.19881 0.00448 ## TweakPsiSegment 4 942 640 / 2577 = 0.24835 0.00583 ## TweakPsiPhiSubtree 239 685 420 / 1631 = 0.25751 0.00402 ## TweakPsiPhiSegment 190 620 361 / 1505 = 0.23987 0.00334 ## TweakHbondSubtree 29 373 224 / 1376 = 0.16279 0.00345 ## TweakHbondSegment 20 437 244 / 1413 = 0.17268 0.00365 ## TweakMultimer 501 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 79 347 229 / 790 = 0.28987 0.00137 ## FixOmega 4 0 0 / 122 = 0.00000 0.00000 ## Backrub 287 383 192 / 935 = 0.20535 0.00215 ## BigBackrub 210 143 78 / 765 = 0.10196 0.00208 ## OneRotamer 0 440 216 / 2218 = 0.09739 0.00424 ## ClashingRotamer 2 3 1 / 202 = 0.00495 0.00065 ## ClusteredRotamer 21 5 3 / 187 = 0.01604 0.00063 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 267 = 0.00375 0.00010 ## CloseGap 0 21 6 / 294 = 0.02041 0.00555 ## HealGap 0 15 9 / 368 = 0.02446 0.00068 ## MoveGap 0 0 0 / 128 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 263 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 137 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 252 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 127 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 608 = 0.00000 0.00000 ## CrossOver 0 0 0 / 130 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 29 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 124 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 138 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)S202 # TweakPsiPhi removed gap before (T0547)G205 # TweakPsiPhi removed gap before (T0547)K353 # TweakPsiSubtree removed gap before (T0547)E535 # TweakPhi removed gap before (T0547)E172 # TweakPhi removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)Y25 # TweakPhi removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)H591 # TweakPhi removed gap before (T0547)R288 # TweakPhi removed gap before (T0547)E576 # TweakPhi removed gap before (T0547)S608 # TweakPhi removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)A247 # TweakPhi removed gap before (T0547)S197 # TweakPsiPhi removed gap before (T0547)K219 # TweakPhi removed gap before (T0547)K367 # TweakPhi removed gap before (T0547)A518 # TweakPhi removed gap before (T0547)L600 # TweakPhi removed gap before (T0547)Q281 # TweakPsiSubtree removed gap before (T0547)P533 # TweakPhi removed gap before (T0547)T482 # TweakPhi removed gap before (T0547)R50 # TweakPhi removed gap before (T0547)I551 # TweakPsiPhi removed gap before (T0547)K222 # TweakPsiPhi removed gap before (T0547)E213 # TweakPsiSubtree removed gap before (T0547)L100 # TweakPsiSubtree removed gap before (T0547)L118 # generation 256: best score out of 40: T0547.try1-opt2 201.14087 cost/residue, 725 clashes 0.12835 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 426 280 / 1442 = 0.19417 0.00322 ## JiggleSubtree 3 55 33 / 609 = 0.05419 0.00406 ## JiggleSegment 5 57 38 / 557 = 0.06822 0.00414 ## OptSubtree 1 0 0 / 135 = 0.00000 0.00000 ## OptSegment 0 1 1 / 268 = 0.00373 0.00131 ## OptAllSegments 0 0 0 / 127 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 137 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 117 = 0.00000 0.00000 ## TweakPhiSubtree 77 689 405 / 1889 = 0.21440 0.00447 ## TweakPhiSegment 72 811 487 / 1846 = 0.26381 0.00479 ## TweakPsiSubtree 3 565 368 / 1854 = 0.19849 0.00447 ## TweakPsiSegment 4 945 642 / 2580 = 0.24884 0.00586 ## TweakPsiPhiSubtree 240 686 421 / 1637 = 0.25718 0.00401 ## TweakPsiPhiSegment 190 621 361 / 1506 = 0.23971 0.00333 ## TweakHbondSubtree 29 374 225 / 1379 = 0.16316 0.00344 ## TweakHbondSegment 20 437 244 / 1414 = 0.17256 0.00365 ## TweakMultimer 505 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 80 352 231 / 797 = 0.28984 0.00138 ## FixOmega 4 0 0 / 123 = 0.00000 0.00000 ## Backrub 287 383 192 / 937 = 0.20491 0.00215 ## BigBackrub 210 143 78 / 767 = 0.10169 0.00207 ## OneRotamer 0 440 216 / 2220 = 0.09730 0.00424 ## ClashingRotamer 2 3 1 / 202 = 0.00495 0.00065 ## ClusteredRotamer 21 5 3 / 189 = 0.01587 0.00062 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 267 = 0.00375 0.00010 ## CloseGap 0 22 6 / 295 = 0.02034 0.00553 ## HealGap 0 15 9 / 368 = 0.02446 0.00068 ## MoveGap 0 0 0 / 128 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 263 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 137 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 253 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 128 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 608 = 0.00000 0.00000 ## CrossOver 0 0 0 / 130 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 29 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 124 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 138 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)L511 # TweakPsiSubtree removed gap before (T0547)K135 # TweakPsiSubtree removed gap before (T0547)L446 # TweakPsiPhi removed gap before (T0547)S188 # TweakPhi removed gap before (T0547)F510 # TweakPhi removed gap before (T0547)L303 # TweakPhi removed gap before (T0547)Y279 # TweakPsiSubtree removed gap before (T0547)A247 # TweakPsiSubtree removed gap before (T0547)P46 # TweakPsiPhi removed gap before (T0547)K171 # TweakPhi removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)L234 # TweakPsiSubtree removed gap before (T0547)E172 # TweakPsiPhi removed gap before (T0547)I551 # TweakPsiSubtree removed gap before (T0547)Y290 # TweakPsiPhi removed gap before (T0547)S321 # TweakPhi removed gap before (T0547)D298 # TweakPsiPhi removed gap before (T0547)D466 # TweakPsiSubtree removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)K68 # TweakPsiSubtree removed gap before (T0547)E346 # TweakPhi removed gap before (T0547)G524 # TweakPsiPhi removed gap before (T0547)I153 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)D564 # TweakPsiPhi removed gap before (T0547)E37 # TweakPhi removed gap before (T0547)A30 # TweakPhi removed gap before (T0547)T482 # TweakPsiSubtree removed gap before (T0547)S539 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I31 # TweakPhi removed gap before (T0547)D452 # TweakPsiPhi removed gap before (T0547)Q458 # TweakPsiPhi removed gap before (T0547)K543 # TweakPhi removed gap before (T0547)G192 # TweakPsiSubtree removed gap before (T0547)K135 # TweakPsiSubtree removed gap before (T0547)F460 # TweakPhi removed gap before (T0547)L224 # TweakPsiSubtree removed gap before (T0547)N141 # TweakPhi removed gap before (T0547)K589 # TweakPsiPhi removed gap before (T0547)K587 # TweakPhi removed gap before (T0547)Y396 # TweakPsiPhi removed gap before (T0547)A195 # TweakPsiSubtree removed gap before (T0547)V516 # TweakPsiSubtree removed gap before (T0547)A405 # TweakPsiPhi removed gap before (T0547)D503 # TweakPhi removed gap before (T0547)N443 # TweakPhi removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)E138 # TweakPsiSubtree removed gap before (T0547)A110 # generation 257: best score out of 40: T0547.try1-opt2 201.13541 cost/residue, 725 clashes 0.12831 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 427 281 / 1450 = 0.19379 0.00322 ## JiggleSubtree 3 56 33 / 617 = 0.05348 0.00401 ## JiggleSegment 5 57 38 / 557 = 0.06822 0.00414 ## OptSubtree 1 0 0 / 135 = 0.00000 0.00000 ## OptSegment 0 1 1 / 268 = 0.00373 0.00131 ## OptAllSegments 0 0 0 / 128 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 138 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 117 = 0.00000 0.00000 ## TweakPhiSubtree 77 695 407 / 1899 = 0.21432 0.00445 ## TweakPhiSegment 72 814 489 / 1856 = 0.26347 0.00480 ## TweakPsiSubtree 3 565 369 / 1862 = 0.19817 0.00446 ## TweakPsiSegment 4 949 644 / 2591 = 0.24855 0.00585 ## TweakPsiPhiSubtree 242 689 424 / 1643 = 0.25806 0.00401 ## TweakPsiPhiSegment 191 625 362 / 1514 = 0.23910 0.00332 ## TweakHbondSubtree 30 376 226 / 1381 = 0.16365 0.00345 ## TweakHbondSegment 20 438 244 / 1419 = 0.17195 0.00363 ## TweakMultimer 510 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 82 353 231 / 799 = 0.28911 0.00137 ## FixOmega 4 0 0 / 123 = 0.00000 0.00000 ## Backrub 290 388 194 / 946 = 0.20507 0.00216 ## BigBackrub 210 143 78 / 768 = 0.10156 0.00207 ## OneRotamer 0 441 216 / 2225 = 0.09708 0.00423 ## ClashingRotamer 2 3 1 / 202 = 0.00495 0.00065 ## ClusteredRotamer 21 5 3 / 189 = 0.01587 0.00062 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 269 = 0.00372 0.00010 ## CloseGap 0 22 6 / 295 = 0.02034 0.00553 ## HealGap 0 15 9 / 368 = 0.02446 0.00068 ## MoveGap 0 0 0 / 129 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 264 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 137 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 253 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 128 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 609 = 0.00000 0.00000 ## CrossOver 0 0 0 / 130 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 29 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 124 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 138 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)D501 # TweakPsiPhi removed gap before (T0547)K286 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)K414 # TweakPhi removed gap before (T0547)S475 # TweakPhi removed gap before (T0547)E115 # TweakPhi removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)S321 # TweakPsiPhi removed gap before (T0547)L419 # TweakPsiSubtree removed gap before (T0547)H151 # TweakPhi removed gap before (T0547)Y396 # TweakPsiSubtree removed gap before (T0547)N201 # TweakPhi removed gap before (T0547)G273 # TweakPsiPhi removed gap before (T0547)A214 # TweakPsiSubtree removed gap before (T0547)P335 # TweakPhi removed gap before (T0547)A189 # TweakPhi removed gap before (T0547)I193 # TweakPhi removed gap before (T0547)D503 # TweakPsiSubtree removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)I180 # TweakPsiSubtree removed gap before (T0547)D316 # TweakPhi removed gap before (T0547)E240 # TweakPsiSubtree removed gap before (T0547)Q89 # TweakPsiPhi removed gap before (T0547)N152 # TweakPsiSubtree removed gap before (T0547)Q309 # TweakPsiSubtree removed gap before (T0547)L85 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiPhi removed gap before (T0547)S579 # TweakPhi removed gap before (T0547)Y491 # TweakPsiSubtree removed gap before (T0547)I31 # TweakPsiSubtree removed gap before (T0547)A427 # TweakPsiPhi removed gap before (T0547)I212 # TweakPsiPhi removed gap before (T0547)H410 # TweakPsiSubtree removed gap before (T0547)N123 # TweakPhi removed gap before (T0547)K246 # TweakPhi removed gap before (T0547)T256 # TweakPhi removed gap before (T0547)I129 # TweakPsiPhi removed gap before (T0547)E285 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPsiPhi removed gap before (T0547)K95 # TweakPsiPhi removed gap before (T0547)L97 # TweakPsiPhi removed gap before (T0547)D562 # TweakPsiPhi removed gap before (T0547)D434 # TweakPsiSubtree removed gap before (T0547)L375 # TweakPsiSubtree removed gap before (T0547)N575 # TweakPhi removed gap before (T0547)D428 # generation 258: best score out of 40: T0547.try1-opt2 201.11240 cost/residue, 725 clashes 0.12826 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 429 282 / 1460 = 0.19315 0.00320 ## JiggleSubtree 3 56 33 / 625 = 0.05280 0.00396 ## JiggleSegment 5 57 38 / 557 = 0.06822 0.00414 ## OptSubtree 1 0 0 / 135 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 128 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 138 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 117 = 0.00000 0.00000 ## TweakPhiSubtree 77 697 408 / 1903 = 0.21440 0.00445 ## TweakPhiSegment 73 818 491 / 1869 = 0.26271 0.00478 ## TweakPsiSubtree 3 566 371 / 1870 = 0.19840 0.00445 ## TweakPsiSegment 4 951 646 / 2600 = 0.24846 0.00586 ## TweakPsiPhiSubtree 245 690 426 / 1653 = 0.25771 0.00400 ## TweakPsiPhiSegment 191 628 366 / 1519 = 0.24095 0.00334 ## TweakHbondSubtree 30 378 226 / 1385 = 0.16318 0.00344 ## TweakHbondSegment 20 439 245 / 1420 = 0.17254 0.00363 ## TweakMultimer 514 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 82 357 232 / 811 = 0.28607 0.00136 ## FixOmega 4 0 0 / 124 = 0.00000 0.00000 ## Backrub 290 391 197 / 953 = 0.20672 0.00218 ## BigBackrub 211 143 78 / 768 = 0.10156 0.00207 ## OneRotamer 0 442 217 / 2229 = 0.09735 0.00423 ## ClashingRotamer 2 3 1 / 202 = 0.00495 0.00065 ## ClusteredRotamer 21 5 3 / 189 = 0.01587 0.00062 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 270 = 0.00370 0.00010 ## CloseGap 0 22 6 / 295 = 0.02034 0.00553 ## HealGap 0 15 9 / 369 = 0.02439 0.00068 ## MoveGap 0 0 0 / 129 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 264 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 137 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 254 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 128 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 609 = 0.00000 0.00000 ## CrossOver 0 0 0 / 130 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 29 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 124 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 138 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)D564 # TweakPsiSubtree removed gap before (T0547)D494 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)F530 # TweakPhi removed gap before (T0547)N297 # TweakPsiPhi removed gap before (T0547)L596 # TweakPsiPhi removed gap before (T0547)Y104 # TweakPhi removed gap before (T0547)S539 # TweakPsiPhi removed gap before (T0547)I388 # TweakPsiPhi removed gap before (T0547)Q458 # TweakPsiPhi removed gap before (T0547)L411 # TweakPsiSubtree removed gap before (T0547)A170 # TweakPsiSubtree removed gap before (T0547)R259 # TweakPhi removed gap before (T0547)I180 # TweakPsiPhi removed gap before (T0547)L38 # TweakPhi removed gap before (T0547)E561 # TweakPsiPhi removed gap before (T0547)H500 # TweakPhi removed gap before (T0547)V184 # TweakPsiSubtree removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)A427 # TweakPhi removed gap before (T0547)L292 # TweakPhi removed gap before (T0547)T239 # TweakPsiPhi removed gap before (T0547)F318 # TweakPhi removed gap before (T0547)I388 # TweakPsiPhi removed gap before (T0547)V299 # TweakPhi removed gap before (T0547)G274 # TweakPsiPhi removed gap before (T0547)F204 # TweakPsiPhi removed gap before (T0547)I333 # TweakPsiPhi removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)E361 # TweakPsiSubtree removed gap before (T0547)L358 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)E343 # TweakPhi removed gap before (T0547)L332 # TweakPhi removed gap before (T0547)S287 # TweakPhi removed gap before (T0547)L163 # TweakPhi removed gap before (T0547)V336 # TweakPhi removed gap before (T0547)K99 # TweakPhi removed gap before (T0547)H231 # TweakPsiPhi removed gap before (T0547)F530 # TweakPsiSubtree removed gap before (T0547)K370 # TweakPhi removed gap before (T0547)G610 # TweakPhi removed gap before (T0547)S555 # TweakPhi removed gap before (T0547)N289 # TweakPsiPhi removed gap before (T0547)V184 # TweakPsiSubtree removed gap before (T0547)L49 # generation 259: best score out of 40: T0547.try1-opt2 201.09557 cost/residue, 726 clashes 0.12835 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 432 284 / 1468 = 0.19346 0.00320 ## JiggleSubtree 3 56 33 / 631 = 0.05230 0.00392 ## JiggleSegment 5 57 38 / 558 = 0.06810 0.00413 ## OptSubtree 1 0 0 / 135 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 128 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 138 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 117 = 0.00000 0.00000 ## TweakPhiSubtree 77 699 409 / 1911 = 0.21402 0.00443 ## TweakPhiSegment 73 821 491 / 1886 = 0.26034 0.00474 ## TweakPsiSubtree 3 566 372 / 1876 = 0.19829 0.00444 ## TweakPsiSegment 4 954 649 / 2606 = 0.24904 0.00585 ## TweakPsiPhiSubtree 248 693 427 / 1659 = 0.25738 0.00400 ## TweakPsiPhiSegment 192 631 369 / 1529 = 0.24133 0.00333 ## TweakHbondSubtree 30 379 227 / 1391 = 0.16319 0.00343 ## TweakHbondSegment 21 440 246 / 1427 = 0.17239 0.00361 ## TweakMultimer 516 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 83 360 234 / 816 = 0.28676 0.00135 ## FixOmega 4 0 0 / 124 = 0.00000 0.00000 ## Backrub 292 392 198 / 957 = 0.20690 0.00219 ## BigBackrub 211 143 78 / 768 = 0.10156 0.00207 ## OneRotamer 0 444 219 / 2236 = 0.09794 0.00422 ## ClashingRotamer 2 3 1 / 202 = 0.00495 0.00065 ## ClusteredRotamer 21 5 3 / 189 = 0.01587 0.00062 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 270 = 0.00370 0.00010 ## CloseGap 0 22 6 / 295 = 0.02034 0.00553 ## HealGap 0 15 9 / 369 = 0.02439 0.00068 ## MoveGap 0 0 0 / 129 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 264 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 137 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 254 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 130 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 609 = 0.00000 0.00000 ## CrossOver 0 0 0 / 131 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 29 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 124 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 138 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)N201 # TweakPsiPhi removed gap before (T0547)K589 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiPhi removed gap before (T0547)A427 # TweakPhi removed gap before (T0547)L351 # TweakPhi removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)N355 # Can't patch backbone between (T0547)E505 and (T0547)K506 because distance= 3.706 not near ideal 3.804 # TweakPhi removed gap before (T0547)S403 # TweakPhi removed gap before (T0547)S202 # TweakPhi removed gap before (T0547)H231 # TweakPsiPhi removed gap before (T0547)I23 # TweakPsiSubtree removed gap before (T0547)M525 # TweakPsiSubtree removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPsiPhi removed gap before (T0547)I592 # TweakPhi removed gap before (T0547)F340 # TweakPhi removed gap before (T0547)I489 # TweakPsiPhi removed gap before (T0547)H527 # TweakPsiPhi removed gap before (T0547)Q281 # TweakPsiSubtree removed gap before (T0547)N459 # TweakPsiPhi removed gap before (T0547)S555 # TweakPhi removed gap before (T0547)I302 # TweakPsiPhi removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)A569 # TweakPhi removed gap before (T0547)D486 # TweakPhi removed gap before (T0547)N24 # TweakPsiSubtree removed gap before (T0547)H151 # TweakPsiSubtree removed gap before (T0547)G594 # TweakPsiPhi removed gap before (T0547)M261 # TweakPsiPhi removed gap before (T0547)Q237 # TweakPsiPhi removed gap before (T0547)A81 # TweakPsiPhi removed gap before (T0547)L248 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)W194 # TweakPhi removed gap before (T0547)G92 # TweakPsiSubtree removed gap before (T0547)S475 # TweakPsiPhi removed gap before (T0547)L139 # TweakPsiSubtree removed gap before (T0547)I319 # TweakPsiPhi removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)K76 # TweakPhi removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPsiSubtree removed gap before (T0547)I333 # TweakPsiPhi removed gap before (T0547)G181 # TweakPsiPhi removed gap before (T0547)D494 # TweakPhi removed gap before (T0547)I238 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)N132 # TweakPsiPhi removed gap before (T0547)V21 # TweakPsiSubtree removed gap before (T0547)G92 # TweakPsiSubtree removed gap before (T0547)C483 # TweakPsiPhi removed gap before (T0547)Y295 # TweakPsiSubtree removed gap before (T0547)K304 # TweakPhi removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)A119 # TweakPhi removed gap before (T0547)K68 # TweakPsiPhi removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)V442 # TweakPsiPhi removed gap before (T0547)Y104 # generation 260: best score out of 40: T0547.try1-opt2 201.06702 cost/residue, 731 clashes 0.12827 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 433 285 / 1474 = 0.19335 0.00319 ## JiggleSubtree 3 56 33 / 635 = 0.05197 0.00390 ## JiggleSegment 5 57 38 / 558 = 0.06810 0.00413 ## OptSubtree 1 0 0 / 135 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 128 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 140 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 117 = 0.00000 0.00000 ## TweakPhiSubtree 77 702 411 / 1919 = 0.21417 0.00442 ## TweakPhiSegment 74 824 493 / 1897 = 0.25988 0.00471 ## TweakPsiSubtree 3 568 372 / 1880 = 0.19787 0.00443 ## TweakPsiSegment 5 957 652 / 2619 = 0.24895 0.00585 ## TweakPsiPhiSubtree 249 697 430 / 1671 = 0.25733 0.00399 ## TweakPsiPhiSegment 193 636 370 / 1541 = 0.24010 0.00331 ## TweakHbondSubtree 30 380 228 / 1398 = 0.16309 0.00343 ## TweakHbondSegment 21 440 246 / 1428 = 0.17227 0.00361 ## TweakMultimer 518 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 83 361 235 / 818 = 0.28729 0.00136 ## FixOmega 4 0 0 / 124 = 0.00000 0.00000 ## Backrub 296 394 198 / 968 = 0.20455 0.00217 ## BigBackrub 211 143 78 / 769 = 0.10143 0.00207 ## OneRotamer 0 444 219 / 2240 = 0.09777 0.00421 ## ClashingRotamer 2 3 1 / 202 = 0.00495 0.00065 ## ClusteredRotamer 21 5 3 / 189 = 0.01587 0.00062 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 271 = 0.00369 0.00010 ## CloseGap 0 22 6 / 295 = 0.02034 0.00553 ## HealGap 0 15 9 / 369 = 0.02439 0.00068 ## MoveGap 0 0 0 / 129 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 264 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 137 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 255 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 130 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 609 = 0.00000 0.00000 ## CrossOver 0 0 0 / 131 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 29 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 124 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 138 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)L441 # TweakPsiPhi removed gap before (T0547)E308 # TweakPsiPhi removed gap before (T0547)Y491 # TweakPhi removed gap before (T0547)F144 # TweakPhi removed gap before (T0547)E561 # TweakPhi removed gap before (T0547)E361 # TweakPsiPhi removed gap before (T0547)E172 # TweakPhi removed gap before (T0547)G111 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)S280 # TweakPsiSubtree removed gap before (T0547)L47 # TweakPsiSubtree removed gap before (T0547)L244 # TweakPhi removed gap before (T0547)I538 # TweakPsiSubtree removed gap before (T0547)S490 # TweakPhi removed gap before (T0547)L408 # TweakPsiSubtree removed gap before (T0547)G262 # TweakPhi removed gap before (T0547)I550 # TweakPsiPhi removed gap before (T0547)S403 # TweakPhi removed gap before (T0547)L391 # TweakPsiSubtree removed gap before (T0547)N61 # TweakPsiSubtree removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)E12 # TweakPsiSubtree removed gap before (T0547)A518 # TweakPhi removed gap before (T0547)K245 # TweakPhi removed gap before (T0547)D484 # TweakPsiSubtree removed gap before (T0547)N201 # TweakPsiPhi removed gap before (T0547)Y605 # TweakPsiSubtree removed gap before (T0547)R183 # TweakPsiPhi removed gap before (T0547)C22 # TweakPsiSubtree removed gap before (T0547)S475 # TweakPsiPhi removed gap before (T0547)V277 # TweakPsiPhi removed gap before (T0547)A30 # TweakPhi removed gap before (T0547)T531 # TweakPhi removed gap before (T0547)M463 # TweakPsiPhi removed gap before (T0547)I16 # TweakPhi removed gap before (T0547)V397 # TweakPhi removed gap before (T0547)D364 # TweakPsiSubtree removed gap before (T0547)F14 # TweakPsiPhi removed gap before (T0547)L47 # TweakPsiPhi removed gap before (T0547)L48 # TweakPhi removed gap before (T0547)I15 # TweakPsiPhi removed gap before (T0547)D3 # TweakPsiSubtree removed gap before (T0547)T473 # TweakPhi removed gap before (T0547)D566 # TweakPhi removed gap before (T0547)L275 # TweakPhi removed gap before (T0547)L499 # TweakPsiPhi removed gap before (T0547)K36 # TweakPsiSubtree removed gap before (T0547)N124 # generation 261: best score out of 40: T0547.try1-opt2 201.04964 cost/residue, 731 clashes 0.12829 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 436 287 / 1484 = 0.19340 0.00317 ## JiggleSubtree 3 56 33 / 641 = 0.05148 0.00386 ## JiggleSegment 5 57 38 / 558 = 0.06810 0.00413 ## OptSubtree 1 0 0 / 135 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 128 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 140 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 117 = 0.00000 0.00000 ## TweakPhiSubtree 77 703 411 / 1925 = 0.21351 0.00440 ## TweakPhiSegment 74 827 494 / 1913 = 0.25823 0.00468 ## TweakPsiSubtree 3 568 372 / 1884 = 0.19745 0.00442 ## TweakPsiSegment 5 961 655 / 2630 = 0.24905 0.00583 ## TweakPsiPhiSubtree 249 701 431 / 1679 = 0.25670 0.00399 ## TweakPsiPhiSegment 195 638 372 / 1548 = 0.24031 0.00331 ## TweakHbondSubtree 30 380 228 / 1402 = 0.16262 0.00342 ## TweakHbondSegment 21 441 246 / 1430 = 0.17203 0.00361 ## TweakMultimer 520 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 83 363 238 / 823 = 0.28919 0.00138 ## FixOmega 4 0 0 / 124 = 0.00000 0.00000 ## Backrub 297 397 199 / 978 = 0.20348 0.00216 ## BigBackrub 211 143 78 / 769 = 0.10143 0.00207 ## OneRotamer 0 445 219 / 2244 = 0.09759 0.00420 ## ClashingRotamer 2 3 1 / 202 = 0.00495 0.00065 ## ClusteredRotamer 21 5 3 / 189 = 0.01587 0.00062 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 273 = 0.00366 0.00010 ## CloseGap 0 22 6 / 296 = 0.02027 0.00551 ## HealGap 0 15 9 / 369 = 0.02439 0.00068 ## MoveGap 0 0 0 / 129 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 265 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 138 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 256 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 130 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 610 = 0.00000 0.00000 ## CrossOver 0 0 0 / 131 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 29 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 124 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 138 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)T409 # TweakPsiSubtree removed gap before (T0547)G181 # TweakPsiPhi removed gap before (T0547)D41 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPhi removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)P128 # TweakPsiSubtree removed gap before (T0547)E278 # TweakPsiSubtree removed gap before (T0547)K57 # TweakPsiPhi removed gap before (T0547)D364 # TweakPsiPhi removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)E435 # TweakPsiSubtree removed gap before (T0547)A119 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)K196 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)R39 # TweakPhi removed gap before (T0547)N141 # TweakPhi removed gap before (T0547)S188 # TweakPhi removed gap before (T0547)G181 # TweakPsiSubtree removed gap before (T0547)K219 # TweakPsiPhi removed gap before (T0547)N24 # TweakPhi removed gap before (T0547)L49 # TweakPsiPhi removed gap before (T0547)A276 # TweakPsiPhi removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)R323 # TweakPsiPhi removed gap before (T0547)E240 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPsiSubtree removed gap before (T0547)F324 # TweakPsiPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)S341 # TweakPsiSubtree removed gap before (T0547)K68 # TweakPsiSubtree removed gap before (T0547)H329 # TweakPhi removed gap before (T0547)I540 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)Q56 # TweakPsiSubtree removed gap before (T0547)E338 # TweakPhi removed gap before (T0547)A405 # TweakPsiPhi removed gap before (T0547)G262 # TweakPhi removed gap before (T0547)L583 # TweakPsiSubtree removed gap before (T0547)N80 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I166 # TweakPsiPhi removed gap before (T0547)I333 # TweakPhi removed gap before (T0547)L38 # TweakPsiSubtree removed gap before (T0547)G517 # TweakPsiSubtree removed gap before (T0547)T409 # TweakPsiPhi removed gap before (T0547)G64 # TweakPhi removed gap before (T0547)E505 # TweakPsiSubtree removed gap before (T0547)L100 # TweakPsiPhi removed gap before (T0547)Q424 # TweakPsiSubtree removed gap before (T0547)R70 # TweakPsiSubtree removed gap before (T0547)G199 # TweakPsiSubtree removed gap before (T0547)L394 # TweakPhi removed gap before (T0547)E346 # TweakPhi removed gap before (T0547)W479 # TweakPhi removed gap before (T0547)Q89 # generation 262: best score out of 40: T0547.try1-opt2 201.04349 cost/residue, 725 clashes 0.12760 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 436 288 / 1489 = 0.19342 0.00316 ## JiggleSubtree 3 56 33 / 645 = 0.05116 0.00384 ## JiggleSegment 5 57 38 / 558 = 0.06810 0.00413 ## OptSubtree 1 0 0 / 136 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 128 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 140 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 117 = 0.00000 0.00000 ## TweakPhiSubtree 77 706 413 / 1932 = 0.21377 0.00439 ## TweakPhiSegment 74 831 494 / 1923 = 0.25689 0.00465 ## TweakPsiSubtree 3 569 372 / 1891 = 0.19672 0.00440 ## TweakPsiSegment 5 966 658 / 2648 = 0.24849 0.00581 ## TweakPsiPhiSubtree 251 706 435 / 1690 = 0.25740 0.00399 ## TweakPsiPhiSegment 196 641 375 / 1555 = 0.24116 0.00330 ## TweakHbondSubtree 30 381 229 / 1408 = 0.16264 0.00340 ## TweakHbondSegment 21 441 246 / 1431 = 0.17191 0.00360 ## TweakMultimer 521 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 83 365 240 / 830 = 0.28916 0.00139 ## FixOmega 4 0 0 / 124 = 0.00000 0.00000 ## Backrub 302 399 200 / 983 = 0.20346 0.00214 ## BigBackrub 212 143 78 / 770 = 0.10130 0.00206 ## OneRotamer 0 446 220 / 2250 = 0.09778 0.00419 ## ClashingRotamer 2 3 1 / 203 = 0.00493 0.00064 ## ClusteredRotamer 21 5 3 / 190 = 0.01579 0.00062 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 273 = 0.00366 0.00010 ## CloseGap 0 22 6 / 297 = 0.02020 0.00550 ## HealGap 0 15 9 / 369 = 0.02439 0.00068 ## MoveGap 0 0 0 / 129 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 266 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 138 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 256 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 130 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 610 = 0.00000 0.00000 ## CrossOver 0 0 0 / 131 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 29 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 124 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 138 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)V502 # TweakPhi removed gap before (T0547)N305 # TweakPsiPhi removed gap before (T0547)L446 # TweakPsiPhi removed gap before (T0547)Y255 # TweakPhi removed gap before (T0547)E521 # TweakPhi removed gap before (T0547)I157 # TweakPsiPhi removed gap before (T0547)R50 # TweakPsiSubtree removed gap before (T0547)I567 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)T239 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPsiSubtree removed gap before (T0547)S208 # TweakPsiSubtree removed gap before (T0547)N585 # TweakPsiPhi removed gap before (T0547)N65 # TweakPsiPhi removed gap before (T0547)L54 # TweakPsiPhi removed gap before (T0547)K582 # TweakPsiSubtree removed gap before (T0547)P451 # TweakPsiSubtree removed gap before (T0547)E308 # TweakPsiPhi removed gap before (T0547)A326 # TweakPsiSubtree removed gap before (T0547)L378 # TweakPsiPhi removed gap before (T0547)D422 # TweakPhi removed gap before (T0547)L385 # TweakPsiSubtree removed gap before (T0547)S368 # TweakPsiPhi removed gap before (T0547)I537 # TweakPsiPhi removed gap before (T0547)E338 # TweakPsiSubtree removed gap before (T0547)M2 # TweakPsiSubtree removed gap before (T0547)A405 # TweakPsiPhi removed gap before (T0547)E257 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F282 # TweakPsiSubtree removed gap before (T0547)S381 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPsiSubtree removed gap before (T0547)D41 # TweakPsiPhi removed gap before (T0547)K582 # TweakPhi removed gap before (T0547)T534 # TweakPsiPhi removed gap before (T0547)D469 # TweakPsiSubtree removed gap before (T0547)T534 # TweakPsiPhi removed gap before (T0547)Q281 # TweakPhi removed gap before (T0547)K86 # TweakPsiSubtree removed gap before (T0547)T239 # TweakPsiSubtree removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)F204 # TweakPsiPhi removed gap before (T0547)A476 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A553 # TweakPsiPhi removed gap before (T0547)I567 # TweakPhi removed gap before (T0547)C483 # TweakPsiSubtree removed gap before (T0547)N141 # TweakPhi removed gap before (T0547)E338 # TweakPsiPhi removed gap before (T0547)E314 # TweakPsiSubtree removed gap before (T0547)I412 # TweakPsiSubtree removed gap before (T0547)A276 # TweakPhi removed gap before (T0547)L378 # TweakPhi removed gap before (T0547)G273 # TweakPsiSubtree removed gap before (T0547)N443 # generation 263: best score out of 40: T0547.try1-opt2 201.01137 cost/residue, 731 clashes 0.12843 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 439 290 / 1499 = 0.19346 0.00316 ## JiggleSubtree 3 56 33 / 645 = 0.05116 0.00384 ## JiggleSegment 5 57 38 / 559 = 0.06798 0.00413 ## OptSubtree 1 0 0 / 136 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 128 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 141 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 117 = 0.00000 0.00000 ## TweakPhiSubtree 77 708 414 / 1936 = 0.21384 0.00439 ## TweakPhiSegment 74 833 494 / 1934 = 0.25543 0.00462 ## TweakPsiSubtree 4 572 375 / 1899 = 0.19747 0.00440 ## TweakPsiSegment 5 969 660 / 2663 = 0.24784 0.00578 ## TweakPsiPhiSubtree 253 706 436 / 1703 = 0.25602 0.00396 ## TweakPsiPhiSegment 196 644 375 / 1560 = 0.24038 0.00328 ## TweakHbondSubtree 30 382 229 / 1413 = 0.16207 0.00339 ## TweakHbondSegment 21 443 247 / 1434 = 0.17225 0.00362 ## TweakMultimer 524 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 84 371 243 / 840 = 0.28929 0.00141 ## FixOmega 4 0 0 / 124 = 0.00000 0.00000 ## Backrub 305 399 200 / 988 = 0.20243 0.00213 ## BigBackrub 212 143 78 / 771 = 0.10117 0.00206 ## OneRotamer 0 446 220 / 2251 = 0.09773 0.00419 ## ClashingRotamer 2 3 1 / 203 = 0.00493 0.00064 ## ClusteredRotamer 21 5 3 / 191 = 0.01571 0.00062 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 273 = 0.00366 0.00010 ## CloseGap 0 22 6 / 297 = 0.02020 0.00550 ## HealGap 0 15 9 / 370 = 0.02432 0.00068 ## MoveGap 0 0 0 / 129 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 266 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 138 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 256 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 130 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 612 = 0.00000 0.00000 ## CrossOver 0 0 0 / 131 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 30 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 125 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 139 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)A307 # TweakPsiPhi removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)S539 # TweakPsiSubtree removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)E213 # TweakPsiSubtree removed gap before (T0547)G190 # TweakPsiPhi removed gap before (T0547)I193 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K543 # TweakPsiPhi removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)H568 # TweakPhi removed gap before (T0547)S368 # TweakPhi removed gap before (T0547)A119 # TweakPsiSubtree removed gap before (T0547)A307 # TweakPsiSubtree removed gap before (T0547)H568 # TweakPsiSubtree removed gap before (T0547)K367 # TweakPsiSubtree removed gap before (T0547)N297 # TweakPhi removed gap before (T0547)G252 # TweakPsiPhi removed gap before (T0547)A81 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPhi removed gap before (T0547)V191 # TweakPsiSubtree removed gap before (T0547)A345 # TweakPsiSubtree removed gap before (T0547)K76 # TweakPsiPhi removed gap before (T0547)E294 # TweakPhi removed gap before (T0547)I145 # TweakPsiSubtree removed gap before (T0547)L499 # TweakPsiPhi removed gap before (T0547)D422 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)S197 # TweakPhi removed gap before (T0547)G594 # TweakPsiSubtree removed gap before (T0547)Y295 # TweakPsiPhi removed gap before (T0547)K99 # TweakPsiSubtree removed gap before (T0547)F232 # TweakPhi removed gap before (T0547)L446 # TweakPhi removed gap before (T0547)S555 # TweakPsiSubtree removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)A431 # TweakPsiPhi removed gap before (T0547)H53 # TweakPhi removed gap before (T0547)D136 # TweakPhi removed gap before (T0547)D562 # TweakPhi removed gap before (T0547)E507 # TweakPsiSubtree removed gap before (T0547)E115 # TweakPsiSubtree removed gap before (T0547)K506 # TweakPsiPhi removed gap before (T0547)L223 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)N289 # TweakPsiSubtree removed gap before (T0547)S372 # TweakPsiPhi removed gap before (T0547)E225 # TweakPsiPhi removed gap before (T0547)K414 # generation 264: best score out of 40: T0547.try1-opt2 201.00935 cost/residue, 731 clashes 0.12827 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 440 290 / 1504 = 0.19282 0.00315 ## JiggleSubtree 3 56 33 / 648 = 0.05093 0.00382 ## JiggleSegment 5 57 38 / 559 = 0.06798 0.00413 ## OptSubtree 1 0 0 / 136 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 128 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 141 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 117 = 0.00000 0.00000 ## TweakPhiSubtree 77 710 417 / 1939 = 0.21506 0.00440 ## TweakPhiSegment 74 835 496 / 1943 = 0.25528 0.00461 ## TweakPsiSubtree 4 572 375 / 1902 = 0.19716 0.00439 ## TweakPsiSegment 5 976 662 / 2683 = 0.24674 0.00574 ## TweakPsiPhiSubtree 255 706 436 / 1714 = 0.25438 0.00394 ## TweakPsiPhiSegment 197 647 378 / 1568 = 0.24107 0.00329 ## TweakHbondSubtree 30 384 230 / 1420 = 0.16197 0.00338 ## TweakHbondSegment 21 444 248 / 1440 = 0.17222 0.00361 ## TweakMultimer 528 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 84 372 245 / 847 = 0.28926 0.00139 ## FixOmega 4 0 0 / 124 = 0.00000 0.00000 ## Backrub 308 404 202 / 997 = 0.20261 0.00213 ## BigBackrub 212 143 78 / 771 = 0.10117 0.00206 ## OneRotamer 0 446 220 / 2254 = 0.09760 0.00419 ## ClashingRotamer 2 3 1 / 204 = 0.00490 0.00064 ## ClusteredRotamer 21 5 3 / 191 = 0.01571 0.00062 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 274 = 0.00365 0.00010 ## CloseGap 0 22 6 / 297 = 0.02020 0.00550 ## HealGap 0 15 9 / 370 = 0.02432 0.00068 ## MoveGap 0 0 0 / 129 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 267 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 138 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 256 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 131 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 613 = 0.00000 0.00000 ## CrossOver 0 0 0 / 131 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 30 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 125 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 140 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L515 # TweakPsiSubtree removed gap before (T0547)D360 # TweakPsiPhi removed gap before (T0547)D484 # TweakPsiSubtree removed gap before (T0547)D558 # TweakPsiPhi removed gap before (T0547)D452 # TweakPsiPhi removed gap before (T0547)E12 # TweakPsiSubtree removed gap before (T0547)K196 # TweakPsiPhi removed gap before (T0547)Y545 # TweakPhi removed gap before (T0547)K506 # TweakPsiPhi removed gap before (T0547)K267 # TweakPhi removed gap before (T0547)I550 # TweakPsiPhi removed gap before (T0547)N443 # TweakPsiPhi removed gap before (T0547)A170 # TweakPsiPhi removed gap before (T0547)K353 # TweakPsiSubtree removed gap before (T0547)A247 # TweakPhi removed gap before (T0547)E257 # TweakPhi removed gap before (T0547)S236 # TweakPsiSubtree removed gap before (T0547)F66 # TweakPsiPhi removed gap before (T0547)Q281 # TweakPhi removed gap before (T0547)E148 # TweakPhi removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)Y605 # TweakPhi removed gap before (T0547)V131 # TweakPsiSubtree removed gap before (T0547)L375 # TweakPsiSubtree removed gap before (T0547)R185 # TweakPsiPhi removed gap before (T0547)G512 # TweakPsiSubtree removed gap before (T0547)D434 # TweakPsiPhi removed gap before (T0547)M525 # TweakPhi removed gap before (T0547)I153 # TweakPhi removed gap before (T0547)V35 # TweakPsiPhi removed gap before (T0547)N284 # TweakPhi removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)Q89 # TweakPsiSubtree removed gap before (T0547)S381 # TweakPsiSubtree removed gap before (T0547)I462 # TweakPhi removed gap before (T0547)K310 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPhi removed gap before (T0547)L49 # TweakPhi removed gap before (T0547)D380 # TweakPhi removed gap before (T0547)G395 # TweakPhi removed gap before (T0547)F93 # TweakPsiPhi removed gap before (T0547)N11 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPsiPhi removed gap before (T0547)T531 # TweakPsiSubtree removed gap before (T0547)I567 # TweakPsiPhi removed gap before (T0547)E72 # TweakPsiPhi removed gap before (T0547)Q588 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPhi removed gap before (T0547)E37 # generation 265: best score out of 40: T0547.try1-opt2 200.93721 cost/residue, 730 clashes 0.12853 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 440 290 / 1506 = 0.19256 0.00315 ## JiggleSubtree 3 56 33 / 652 = 0.05061 0.00380 ## JiggleSegment 5 57 38 / 559 = 0.06798 0.00413 ## OptSubtree 1 0 0 / 137 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 128 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 141 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 118 = 0.00000 0.00000 ## TweakPhiSubtree 77 714 419 / 1950 = 0.21487 0.00438 ## TweakPhiSegment 74 838 498 / 1949 = 0.25552 0.00460 ## TweakPsiSubtree 4 572 375 / 1909 = 0.19644 0.00438 ## TweakPsiSegment 5 980 664 / 2693 = 0.24657 0.00572 ## TweakPsiPhiSubtree 256 707 437 / 1724 = 0.25348 0.00392 ## TweakPsiPhiSegment 197 651 382 / 1576 = 0.24239 0.00332 ## TweakHbondSubtree 30 386 230 / 1428 = 0.16106 0.00336 ## TweakHbondSegment 21 447 250 / 1451 = 0.17229 0.00366 ## TweakMultimer 534 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 85 375 246 / 852 = 0.28873 0.00139 ## FixOmega 4 0 0 / 124 = 0.00000 0.00000 ## Backrub 308 405 202 / 999 = 0.20220 0.00212 ## BigBackrub 212 143 78 / 772 = 0.10104 0.00206 ## OneRotamer 0 447 221 / 2260 = 0.09779 0.00418 ## ClashingRotamer 2 3 1 / 205 = 0.00488 0.00064 ## ClusteredRotamer 21 5 3 / 191 = 0.01571 0.00062 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 274 = 0.00365 0.00010 ## CloseGap 0 22 6 / 297 = 0.02020 0.00550 ## HealGap 0 15 9 / 370 = 0.02432 0.00068 ## MoveGap 0 0 0 / 129 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 267 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 140 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 256 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 132 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 613 = 0.00000 0.00000 ## CrossOver 0 0 0 / 132 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 31 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 125 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 141 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)G92 # TweakPsiPhi removed gap before (T0547)K86 # TweakPsiSubtree removed gap before (T0547)E376 # TweakPsiSubtree removed gap before (T0547)T559 # TweakPsiPhi removed gap before (T0547)S539 # TweakPsiSubtree removed gap before (T0547)I592 # TweakPsiSubtree removed gap before (T0547)A146 # TweakPhi removed gap before (T0547)D572 # TweakPhi removed gap before (T0547)Q520 # TweakPsiPhi removed gap before (T0547)I319 # TweakPsiSubtree removed gap before (T0547)H500 # TweakPhi removed gap before (T0547)I489 # TweakPsiSubtree removed gap before (T0547)G199 # TweakPhi removed gap before (T0547)K27 # TweakPhi removed gap before (T0547)E60 # TweakPsiPhi removed gap before (T0547)L420 # TweakPsiSubtree removed gap before (T0547)L266 # TweakPsiSubtree removed gap before (T0547)D501 # TweakPhi removed gap before (T0547)N249 # TweakPsiPhi removed gap before (T0547)G133 # TweakPsiSubtree removed gap before (T0547)F73 # TweakPhi removed gap before (T0547)M261 # TweakPsiSubtree removed gap before (T0547)N67 # TweakPsiSubtree removed gap before (T0547)L49 # TweakPhi removed gap before (T0547)F453 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)F282 # TweakPsiPhi removed gap before (T0547)F599 # TweakPsiPhi removed gap before (T0547)Y104 # TweakPsiPhi removed gap before (T0547)F144 # TweakPsiSubtree removed gap before (T0547)L600 # TweakPhi removed gap before (T0547)L408 # TweakPsiSubtree removed gap before (T0547)S236 # TweakPsiPhi removed gap before (T0547)F498 # TweakPsiPhi removed gap before (T0547)G64 # TweakPsiPhi removed gap before (T0547)Q226 # TweakPsiPhi removed gap before (T0547)K171 # TweakPsiPhi removed gap before (T0547)V300 # TweakPsiPhi removed gap before (T0547)Q342 # TweakPsiPhi removed gap before (T0547)E250 # TweakPsiPhi removed gap before (T0547)K582 # TweakPsiPhi removed gap before (T0547)N13 # TweakPhi removed gap before (T0547)L266 # TweakPsiPhi removed gap before (T0547)H329 # TweakPsiSubtree removed gap before (T0547)I369 # TweakPsiPhi removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)F134 # TweakPsiPhi removed gap before (T0547)V547 # generation 266: best score out of 40: T0547.try1-opt2 200.92580 cost/residue, 730 clashes 0.12852 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 443 294 / 1512 = 0.19444 0.00315 ## JiggleSubtree 3 56 33 / 655 = 0.05038 0.00378 ## JiggleSegment 5 57 38 / 560 = 0.06786 0.00412 ## OptSubtree 1 0 0 / 137 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 128 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 141 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 118 = 0.00000 0.00000 ## TweakPhiSubtree 79 715 420 / 1956 = 0.21472 0.00436 ## TweakPhiSegment 75 838 498 / 1955 = 0.25473 0.00458 ## TweakPsiSubtree 4 574 376 / 1914 = 0.19645 0.00437 ## TweakPsiSegment 5 987 668 / 2704 = 0.24704 0.00574 ## TweakPsiPhiSubtree 257 713 441 / 1739 = 0.25359 0.00394 ## TweakPsiPhiSegment 199 652 383 / 1585 = 0.24164 0.00330 ## TweakHbondSubtree 30 386 230 / 1431 = 0.16073 0.00335 ## TweakHbondSegment 21 451 253 / 1463 = 0.17293 0.00368 ## TweakMultimer 539 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 85 378 247 / 858 = 0.28788 0.00138 ## FixOmega 4 0 0 / 125 = 0.00000 0.00000 ## Backrub 309 407 203 / 1005 = 0.20199 0.00212 ## BigBackrub 212 143 78 / 772 = 0.10104 0.00206 ## OneRotamer 0 447 221 / 2265 = 0.09757 0.00417 ## ClashingRotamer 2 3 1 / 205 = 0.00488 0.00064 ## ClusteredRotamer 21 5 3 / 191 = 0.01571 0.00062 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 275 = 0.00364 0.00010 ## CloseGap 0 22 6 / 297 = 0.02020 0.00550 ## HealGap 0 15 9 / 371 = 0.02426 0.00068 ## MoveGap 0 0 0 / 129 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 267 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 141 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 258 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 132 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 613 = 0.00000 0.00000 ## CrossOver 0 0 0 / 132 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 31 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 125 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 141 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)E338 # TweakPsiPhi removed gap before (T0547)K414 # TweakPhi removed gap before (T0547)L419 # TweakPsiPhi removed gap before (T0547)E60 # TweakPsiSubtree removed gap before (T0547)L411 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)D566 # TweakPhi removed gap before (T0547)A147 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPsiSubtree removed gap before (T0547)P128 # TweakPsiPhi removed gap before (T0547)E225 # TweakPsiSubtree removed gap before (T0547)E576 # TweakPhi removed gap before (T0547)L224 # TweakPhi removed gap before (T0547)N249 # TweakPsiPhi removed gap before (T0547)G455 # TweakPhi removed gap before (T0547)G517 # TweakPsiSubtree removed gap before (T0547)K357 # TweakPhi removed gap before (T0547)Q437 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)Y279 # TweakPhi removed gap before (T0547)L411 # TweakPsiSubtree removed gap before (T0547)T228 # TweakPsiPhi removed gap before (T0547)V611 # TweakPsiSubtree removed gap before (T0547)N580 # TweakPhi removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)Q433 # TweakPsiSubtree removed gap before (T0547)I388 # TweakPsiPhi removed gap before (T0547)H527 # TweakPhi removed gap before (T0547)T482 # TweakPhi removed gap before (T0547)E240 # TweakPsiSubtree removed gap before (T0547)Y290 # TweakPhi removed gap before (T0547)K203 # TweakPsiPhi removed gap before (T0547)F73 # TweakPsiSubtree removed gap before (T0547)N105 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)V299 # TweakPsiPhi removed gap before (T0547)I167 # TweakPhi removed gap before (T0547)G274 # TweakPsiPhi removed gap before (T0547)I32 # TweakPsiSubtree removed gap before (T0547)I157 # TweakPhi removed gap before (T0547)G262 # TweakPsiSubtree removed gap before (T0547)L499 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPsiPhi removed gap before (T0547)D564 # TweakPsiSubtree removed gap before (T0547)G45 # TweakPsiSubtree removed gap before (T0547)D3 # TweakPsiPhi removed gap before (T0547)S368 # TweakPhi removed gap before (T0547)H151 # TweakPsiSubtree removed gap before (T0547)Q520 # TweakPhi removed gap before (T0547)I317 # TweakPsiSubtree removed gap before (T0547)K36 # generation 267: best score out of 40: T0547.try1-opt2 200.90967 cost/residue, 731 clashes 0.12852 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 448 295 / 1520 = 0.19408 0.00313 ## JiggleSubtree 3 56 33 / 657 = 0.05023 0.00377 ## JiggleSegment 5 57 38 / 560 = 0.06786 0.00412 ## OptSubtree 1 0 0 / 137 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 128 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 141 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 118 = 0.00000 0.00000 ## TweakPhiSubtree 79 716 420 / 1966 = 0.21363 0.00434 ## TweakPhiSegment 76 839 501 / 1961 = 0.25548 0.00458 ## TweakPsiSubtree 4 575 376 / 1918 = 0.19604 0.00436 ## TweakPsiSegment 5 989 668 / 2722 = 0.24541 0.00570 ## TweakPsiPhiSubtree 258 716 441 / 1745 = 0.25272 0.00393 ## TweakPsiPhiSegment 202 657 385 / 1590 = 0.24214 0.00331 ## TweakHbondSubtree 30 387 230 / 1435 = 0.16028 0.00334 ## TweakHbondSegment 22 454 253 / 1477 = 0.17129 0.00364 ## TweakMultimer 543 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 85 381 250 / 863 = 0.28969 0.00139 ## FixOmega 4 0 0 / 126 = 0.00000 0.00000 ## Backrub 312 411 204 / 1012 = 0.20158 0.00212 ## BigBackrub 212 143 78 / 773 = 0.10091 0.00206 ## OneRotamer 0 447 221 / 2268 = 0.09744 0.00417 ## ClashingRotamer 2 3 1 / 205 = 0.00488 0.00064 ## ClusteredRotamer 21 5 3 / 192 = 0.01562 0.00061 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 275 = 0.00364 0.00010 ## CloseGap 0 22 6 / 297 = 0.02020 0.00550 ## HealGap 0 15 9 / 373 = 0.02413 0.00068 ## MoveGap 0 0 0 / 129 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 268 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 141 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 258 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 132 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 613 = 0.00000 0.00000 ## CrossOver 0 0 0 / 133 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 31 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 125 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 142 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)A327 # TweakPsiPhi removed gap before (T0547)E172 # TweakPsiPhi removed gap before (T0547)N328 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPsiPhi removed gap before (T0547)Q56 # TweakPsiSubtree removed gap before (T0547)I319 # TweakPsiPhi removed gap before (T0547)S202 # TweakPsiPhi removed gap before (T0547)W479 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K36 # TweakPsiPhi removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)L303 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)G192 # TweakPsiSubtree removed gap before (T0547)E488 # TweakPsiPhi removed gap before (T0547)K68 # TweakPsiPhi removed gap before (T0547)H527 # TweakPsiSubtree removed gap before (T0547)V584 # TweakPhi removed gap before (T0547)A268 # TweakPsiSubtree removed gap before (T0547)V87 # TweakPhi removed gap before (T0547)D40 # TweakPsiPhi removed gap before (T0547)L529 # TweakPsiPhi removed gap before (T0547)E308 # TweakPhi removed gap before (T0547)L418 # TweakPsiPhi removed gap before (T0547)F318 # TweakPsiPhi removed gap before (T0547)G274 # TweakPhi removed gap before (T0547)L48 # TweakPhi removed gap before (T0547)L583 # TweakPsiPhi removed gap before (T0547)F144 # TweakPsiSubtree removed gap before (T0547)A247 # TweakPhi removed gap before (T0547)L351 # TweakPsiSubtree removed gap before (T0547)E225 # TweakPhi removed gap before (T0547)G273 # TweakPsiSubtree removed gap before (T0547)G322 # TweakPsiPhi removed gap before (T0547)I166 # TweakPsiPhi removed gap before (T0547)T256 # TweakPhi removed gap before (T0547)V215 # TweakPhi removed gap before (T0547)G421 # TweakPsiPhi removed gap before (T0547)A431 # TweakPsiPhi removed gap before (T0547)K113 # TweakPsiPhi removed gap before (T0547)D562 # TweakPsiPhi removed gap before (T0547)N80 # TweakPhi removed gap before (T0547)H568 # TweakPsiPhi removed gap before (T0547)I32 # generation 268: best score out of 40: T0547.try1-opt2 200.86603 cost/residue, 731 clashes 0.12856 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 449 295 / 1524 = 0.19357 0.00313 ## JiggleSubtree 3 56 33 / 665 = 0.04962 0.00372 ## JiggleSegment 5 57 38 / 561 = 0.06774 0.00411 ## OptSubtree 1 0 0 / 137 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 129 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 142 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 118 = 0.00000 0.00000 ## TweakPhiSubtree 79 717 421 / 1971 = 0.21360 0.00435 ## TweakPhiSegment 76 840 503 / 1966 = 0.25585 0.00457 ## TweakPsiSubtree 4 576 377 / 1921 = 0.19625 0.00435 ## TweakPsiSegment 5 992 670 / 2730 = 0.24542 0.00569 ## TweakPsiPhiSubtree 259 721 445 / 1759 = 0.25298 0.00395 ## TweakPsiPhiSegment 202 662 389 / 1600 = 0.24313 0.00333 ## TweakHbondSubtree 30 387 230 / 1438 = 0.15994 0.00333 ## TweakHbondSegment 22 454 253 / 1486 = 0.17026 0.00362 ## TweakMultimer 543 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 86 386 251 / 869 = 0.28884 0.00142 ## FixOmega 4 0 0 / 126 = 0.00000 0.00000 ## Backrub 313 416 209 / 1025 = 0.20390 0.00216 ## BigBackrub 213 143 78 / 774 = 0.10078 0.00205 ## OneRotamer 0 448 221 / 2273 = 0.09723 0.00416 ## ClashingRotamer 2 3 1 / 205 = 0.00488 0.00064 ## ClusteredRotamer 21 5 3 / 192 = 0.01562 0.00061 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 276 = 0.00362 0.00010 ## CloseGap 0 22 6 / 297 = 0.02020 0.00550 ## HealGap 0 15 9 / 374 = 0.02406 0.00067 ## MoveGap 0 0 0 / 129 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 268 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 141 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 258 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 132 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 614 = 0.00000 0.00000 ## CrossOver 0 0 0 / 133 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 31 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 125 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 142 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)N305 # TweakPhi removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)G74 # TweakPsiPhi removed gap before (T0547)N141 # TweakPhi removed gap before (T0547)K113 # TweakPhi removed gap before (T0547)I8 # TweakPsiPhi removed gap before (T0547)Q437 # TweakPhi removed gap before (T0547)L456 # TweakPhi removed gap before (T0547)G150 # TweakPsiSubtree removed gap before (T0547)N141 # TweakPsiPhi removed gap before (T0547)K304 # TweakPsiSubtree removed gap before (T0547)M2 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L389 # TweakPhi removed gap before (T0547)T209 # TweakPsiSubtree removed gap before (T0547)F51 # TweakPsiPhi removed gap before (T0547)L419 # TweakPhi removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)L420 # TweakPsiPhi removed gap before (T0547)M571 # TweakPsiSubtree removed gap before (T0547)E37 # TweakPsiPhi removed gap before (T0547)I16 # TweakPsiPhi removed gap before (T0547)R288 # TweakPsiPhi removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)I167 # TweakPsiPhi removed gap before (T0547)L430 # TweakPhi removed gap before (T0547)D136 # TweakPsiSubtree removed gap before (T0547)L389 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPsiPhi removed gap before (T0547)R467 # TweakPhi removed gap before (T0547)F599 # TweakPsiPhi removed gap before (T0547)Q281 # TweakPsiPhi removed gap before (T0547)K222 # TweakPsiPhi removed gap before (T0547)I540 # TweakPsiPhi removed gap before (T0547)L186 # TweakPsiPhi removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)T534 # TweakPhi removed gap before (T0547)G610 # TweakPsiPhi removed gap before (T0547)R577 # TweakPsiPhi removed gap before (T0547)G190 # TweakPsiSubtree removed gap before (T0547)G45 # TweakPsiSubtree removed gap before (T0547)D298 # TweakPsiPhi removed gap before (T0547)K17 # TweakPhi removed gap before (T0547)N124 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)G273 # TweakPsiPhi removed gap before (T0547)K246 # TweakPsiPhi removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)S555 # generation 269: best score out of 40: T0547.try1-opt2 200.84283 cost/residue, 731 clashes 0.12842 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 452 296 / 1530 = 0.19346 0.00313 ## JiggleSubtree 3 56 33 / 669 = 0.04933 0.00370 ## JiggleSegment 5 57 38 / 561 = 0.06774 0.00411 ## OptSubtree 1 0 0 / 137 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 130 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 142 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 118 = 0.00000 0.00000 ## TweakPhiSubtree 80 721 424 / 1978 = 0.21436 0.00434 ## TweakPhiSegment 76 843 508 / 1973 = 0.25748 0.00456 ## TweakPsiSubtree 4 576 377 / 1924 = 0.19595 0.00435 ## TweakPsiSegment 5 994 672 / 2738 = 0.24543 0.00568 ## TweakPsiPhiSubtree 260 726 448 / 1770 = 0.25311 0.00394 ## TweakPsiPhiSegment 203 667 393 / 1614 = 0.24349 0.00332 ## TweakHbondSubtree 30 387 230 / 1441 = 0.15961 0.00333 ## TweakHbondSegment 22 454 253 / 1496 = 0.16912 0.00360 ## TweakMultimer 549 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 88 391 255 / 877 = 0.29076 0.00146 ## FixOmega 4 0 0 / 126 = 0.00000 0.00000 ## Backrub 316 419 210 / 1035 = 0.20290 0.00214 ## BigBackrub 213 143 78 / 775 = 0.10065 0.00205 ## OneRotamer 0 448 221 / 2276 = 0.09710 0.00415 ## ClashingRotamer 2 3 1 / 206 = 0.00485 0.00063 ## ClusteredRotamer 21 5 3 / 192 = 0.01562 0.00061 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 276 = 0.00362 0.00010 ## CloseGap 0 22 6 / 298 = 0.02013 0.00548 ## HealGap 0 15 9 / 374 = 0.02406 0.00067 ## MoveGap 0 0 0 / 130 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 268 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 141 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 258 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 133 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 614 = 0.00000 0.00000 ## CrossOver 0 0 0 / 133 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 31 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 125 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 142 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)L49 # TweakPsiPhi removed gap before (T0547)K71 # TweakPsiPhi removed gap before (T0547)I142 # TweakPsiSubtree removed gap before (T0547)I167 # TweakPsiSubtree removed gap before (T0547)E12 # TweakPhi removed gap before (T0547)S387 # TweakPsiPhi removed gap before (T0547)K135 # TweakPhi removed gap before (T0547)A268 # TweakPhi removed gap before (T0547)D401 # TweakPsiPhi removed gap before (T0547)I140 # TweakPsiSubtree removed gap before (T0547)V184 # TweakPsiPhi removed gap before (T0547)Q281 # TweakPhi removed gap before (T0547)F510 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)V87 # TweakPsiPhi removed gap before (T0547)L38 # TweakPsiPhi removed gap before (T0547)E561 # TweakPsiPhi removed gap before (T0547)I538 # TweakPsiPhi removed gap before (T0547)F510 # TweakPsiSubtree removed gap before (T0547)A416 # TweakPsiPhi removed gap before (T0547)K68 # TweakPhi removed gap before (T0547)L529 # TweakPsiPhi removed gap before (T0547)E125 # TweakPhi removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)I417 # TweakPsiSubtree removed gap before (T0547)H231 # TweakPhi removed gap before (T0547)L600 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPsiPhi removed gap before (T0547)Y519 # TweakPhi removed gap before (T0547)A307 # TweakPsiPhi removed gap before (T0547)N216 # TweakPsiSubtree removed gap before (T0547)A195 # TweakPhi removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)I15 # TweakPsiPhi removed gap before (T0547)F324 # TweakPhi removed gap before (T0547)F340 # TweakPsiSubtree removed gap before (T0547)H532 # TweakPsiPhi removed gap before (T0547)T531 # TweakPhi removed gap before (T0547)M463 # TweakPsiPhi removed gap before (T0547)E285 # TweakPsiSubtree removed gap before (T0547)L100 # TweakPhi removed gap before (T0547)L560 # TweakPhi removed gap before (T0547)D564 # TweakPhi removed gap before (T0547)E346 # TweakPsiSubtree removed gap before (T0547)K196 # TweakPsiPhi removed gap before (T0547)R70 # TweakPsiPhi removed gap before (T0547)I62 # TweakPsiPhi removed gap before (T0547)A345 # TweakPsiPhi removed gap before (T0547)N132 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPhi removed gap before (T0547)K589 # TweakPsiSubtree removed gap before (T0547)R70 # TweakPsiSubtree removed gap before (T0547)A251 # TweakPsiSubtree removed gap before (T0547)D503 # TweakPhi removed gap before (T0547)N123 # generation 270: best score out of 40: T0547.try1-opt2 200.79735 cost/residue, 731 clashes 0.12813 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 452 296 / 1535 = 0.19283 0.00312 ## JiggleSubtree 3 56 33 / 673 = 0.04903 0.00368 ## JiggleSegment 5 57 38 / 562 = 0.06762 0.00410 ## OptSubtree 1 0 0 / 137 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 130 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 143 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 118 = 0.00000 0.00000 ## TweakPhiSubtree 80 722 424 / 1984 = 0.21371 0.00433 ## TweakPhiSegment 76 848 513 / 1985 = 0.25844 0.00455 ## TweakPsiSubtree 4 576 377 / 1927 = 0.19564 0.00434 ## TweakPsiSegment 6 999 677 / 2753 = 0.24591 0.00567 ## TweakPsiPhiSubtree 261 732 453 / 1786 = 0.25364 0.00393 ## TweakPsiPhiSegment 204 672 396 / 1621 = 0.24429 0.00334 ## TweakHbondSubtree 30 387 230 / 1445 = 0.15917 0.00332 ## TweakHbondSegment 23 456 254 / 1505 = 0.16877 0.00360 ## TweakMultimer 553 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 89 393 258 / 882 = 0.29252 0.00150 ## FixOmega 4 0 0 / 126 = 0.00000 0.00000 ## Backrub 317 420 211 / 1040 = 0.20288 0.00214 ## BigBackrub 213 143 78 / 775 = 0.10065 0.00205 ## OneRotamer 0 448 221 / 2280 = 0.09693 0.00415 ## ClashingRotamer 2 3 1 / 206 = 0.00485 0.00063 ## ClusteredRotamer 21 5 3 / 192 = 0.01562 0.00061 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 276 = 0.00362 0.00010 ## CloseGap 0 22 6 / 298 = 0.02013 0.00548 ## HealGap 0 15 9 / 374 = 0.02406 0.00067 ## MoveGap 0 0 0 / 130 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 269 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 141 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 258 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 133 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 614 = 0.00000 0.00000 ## CrossOver 0 0 0 / 134 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 31 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 126 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 142 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)N328 # TweakPsiPhi removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)E250 # TweakPsiSubtree removed gap before (T0547)A327 # TweakPhi removed gap before (T0547)E164 # TweakPsiSubtree removed gap before (T0547)N65 # TweakPsiPhi removed gap before (T0547)T473 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)N355 # TweakPsiSubtree removed gap before (T0547)F513 # TweakPsiPhi removed gap before (T0547)T409 # TweakPhi removed gap before (T0547)T534 # TweakPhi removed gap before (T0547)H410 # TweakPsiPhi removed gap before (T0547)I567 # TweakPsiPhi removed gap before (T0547)L275 # TweakPsiPhi removed gap before (T0547)F318 # TweakPsiPhi removed gap before (T0547)A569 # TweakPsiPhi removed gap before (T0547)D401 # TweakPsiPhi removed gap before (T0547)N96 # TweakPhi removed gap before (T0547)L258 # TweakPhi removed gap before (T0547)N270 # TweakPhi removed gap before (T0547)D383 # TweakPhi removed gap before (T0547)Q226 # TweakPsiPhi removed gap before (T0547)K99 # TweakPhi removed gap before (T0547)N355 # TweakPsiPhi removed gap before (T0547)S188 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPhi removed gap before (T0547)K357 # TweakPhi removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)E240 # TweakPsiPhi removed gap before (T0547)D422 # TweakPsiSubtree removed gap before (T0547)E26 # TweakPhi removed gap before (T0547)E505 # TweakPsiPhi removed gap before (T0547)I153 # TweakPsiPhi removed gap before (T0547)R39 # TweakPsiPhi removed gap before (T0547)I167 # TweakPsiSubtree removed gap before (T0547)N216 # TweakPsiSubtree removed gap before (T0547)I382 # TweakPsiPhi removed gap before (T0547)T228 # TweakPhi removed gap before (T0547)N601 # TweakPsiSubtree removed gap before (T0547)L606 # TweakPsiSubtree removed gap before (T0547)Y565 # TweakPhi removed gap before (T0547)A327 # TweakPsiSubtree removed gap before (T0547)L419 # TweakPhi removed gap before (T0547)G107 # TweakPhi removed gap before (T0547)W479 # TweakPsiSubtree removed gap before (T0547)A165 # TweakPhi removed gap before (T0547)K17 # TweakPsiSubtree removed gap before (T0547)A69 # TweakPsiPhi removed gap before (T0547)W194 # generation 271: best score out of 40: T0547.try1-opt2 200.72041 cost/residue, 731 clashes 0.12803 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 456 297 / 1543 = 0.19248 0.00311 ## JiggleSubtree 3 56 33 / 673 = 0.04903 0.00368 ## JiggleSegment 5 57 38 / 562 = 0.06762 0.00410 ## OptSubtree 1 0 0 / 137 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 130 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 143 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 118 = 0.00000 0.00000 ## TweakPhiSubtree 80 726 429 / 1992 = 0.21536 0.00441 ## TweakPhiSegment 76 851 519 / 1994 = 0.26028 0.00458 ## TweakPsiSubtree 4 578 379 / 1932 = 0.19617 0.00433 ## TweakPsiSegment 6 1003 681 / 2766 = 0.24620 0.00565 ## TweakPsiPhiSubtree 261 736 455 / 1800 = 0.25278 0.00390 ## TweakPsiPhiSegment 208 674 398 / 1628 = 0.24447 0.00334 ## TweakHbondSubtree 30 387 230 / 1447 = 0.15895 0.00331 ## TweakHbondSegment 23 458 255 / 1517 = 0.16809 0.00358 ## TweakMultimer 554 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 90 396 261 / 890 = 0.29326 0.00152 ## FixOmega 4 0 0 / 127 = 0.00000 0.00000 ## Backrub 317 423 211 / 1044 = 0.20211 0.00214 ## BigBackrub 213 143 78 / 775 = 0.10065 0.00205 ## OneRotamer 0 448 221 / 2282 = 0.09684 0.00414 ## ClashingRotamer 2 3 1 / 206 = 0.00485 0.00063 ## ClusteredRotamer 21 5 3 / 193 = 0.01554 0.00061 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 276 = 0.00362 0.00010 ## CloseGap 0 22 6 / 299 = 0.02007 0.00546 ## HealGap 0 15 9 / 375 = 0.02400 0.00067 ## MoveGap 0 0 0 / 130 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 269 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 141 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 259 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 133 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 616 = 0.00000 0.00000 ## CrossOver 0 0 0 / 134 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 31 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 127 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 142 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)R402 # TweakPsiPhi removed gap before (T0547)L596 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)D562 # TweakPhi removed gap before (T0547)F599 # TweakPsiPhi removed gap before (T0547)E361 # TweakPhi removed gap before (T0547)I609 # TweakPhi removed gap before (T0547)K135 # TweakPsiPhi removed gap before (T0547)I145 # TweakPsiSubtree removed gap before (T0547)S280 # TweakPsiPhi removed gap before (T0547)M261 # TweakPsiSubtree removed gap before (T0547)E225 # TweakPhi removed gap before (T0547)L499 # TweakPhi removed gap before (T0547)K352 # TweakPhi removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)L606 # TweakPsiPhi removed gap before (T0547)Q56 # TweakPsiSubtree removed gap before (T0547)A268 # TweakPsiSubtree removed gap before (T0547)L419 # TweakPsiPhi removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)F530 # TweakPsiPhi removed gap before (T0547)A195 # TweakPhi removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)V522 # TweakPsiPhi removed gap before (T0547)E338 # TweakPsiPhi removed gap before (T0547)G512 # TweakPhi removed gap before (T0547)K283 # TweakPsiPhi removed gap before (T0547)Y25 # TweakPsiPhi removed gap before (T0547)K219 # TweakPhi removed gap before (T0547)I129 # TweakPsiPhi removed gap before (T0547)L182 # TweakPsiSubtree removed gap before (T0547)G604 # TweakPsiPhi removed gap before (T0547)E548 # TweakPhi removed gap before (T0547)L596 # TweakPsiPhi removed gap before (T0547)F453 # TweakPsiPhi removed gap before (T0547)A195 # TweakPsiSubtree removed gap before (T0547)R183 # TweakPsiSubtree removed gap before (T0547)R50 # TweakPsiPhi removed gap before (T0547)N270 # TweakPsiSubtree removed gap before (T0547)V336 # TweakPsiPhi removed gap before (T0547)L38 # TweakPsiSubtree removed gap before (T0547)A170 # TweakPsiSubtree removed gap before (T0547)A30 # TweakPhi removed gap before (T0547)G610 # TweakPsiSubtree removed gap before (T0547)V191 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A536 # TweakPsiSubtree removed gap before (T0547)S112 # generation 272: best score out of 40: T0547.try1-opt2 200.70021 cost/residue, 730 clashes 0.12786 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 457 299 / 1549 = 0.19303 0.00311 ## JiggleSubtree 3 56 34 / 677 = 0.05022 0.00366 ## JiggleSegment 5 57 38 / 563 = 0.06750 0.00410 ## OptSubtree 1 0 0 / 137 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 130 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 144 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 118 = 0.00000 0.00000 ## TweakPhiSubtree 80 731 431 / 2002 = 0.21528 0.00440 ## TweakPhiSegment 76 856 523 / 2004 = 0.26098 0.00457 ## TweakPsiSubtree 4 578 379 / 1938 = 0.19556 0.00432 ## TweakPsiSegment 6 1008 687 / 2775 = 0.24757 0.00566 ## TweakPsiPhiSubtree 262 742 458 / 1815 = 0.25234 0.00390 ## TweakPsiPhiSegment 210 676 399 / 1633 = 0.24434 0.00334 ## TweakHbondSubtree 31 387 230 / 1448 = 0.15884 0.00331 ## TweakHbondSegment 23 460 256 / 1523 = 0.16809 0.00358 ## TweakMultimer 556 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 91 398 266 / 898 = 0.29621 0.00153 ## FixOmega 4 0 0 / 127 = 0.00000 0.00000 ## Backrub 319 425 213 / 1050 = 0.20286 0.00214 ## BigBackrub 213 143 78 / 778 = 0.10026 0.00204 ## OneRotamer 0 450 221 / 2286 = 0.09668 0.00414 ## ClashingRotamer 2 3 1 / 206 = 0.00485 0.00063 ## ClusteredRotamer 21 5 3 / 194 = 0.01546 0.00061 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 276 = 0.00362 0.00010 ## CloseGap 0 22 6 / 299 = 0.02007 0.00546 ## HealGap 0 15 9 / 376 = 0.02394 0.00067 ## MoveGap 0 0 0 / 130 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 270 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 141 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 260 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 133 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 617 = 0.00000 0.00000 ## CrossOver 0 0 0 / 134 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 31 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 127 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 142 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)I31 # TweakPhi removed gap before (T0547)L163 # TweakPsiPhi removed gap before (T0547)A476 # TweakPsiPhi removed gap before (T0547)K135 # TweakPsiPhi removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)N18 # TweakPsiSubtree removed gap before (T0547)N404 # TweakPhi removed gap before (T0547)F51 # TweakPsiSubtree removed gap before (T0547)E548 # TweakPsiPhi removed gap before (T0547)L606 # TweakPsiPhi removed gap before (T0547)S445 # TweakPhi removed gap before (T0547)K245 # TweakPsiPhi removed gap before (T0547)S372 # TweakPhi removed gap before (T0547)N297 # TweakPsiPhi removed gap before (T0547)Y509 # TweakPsiPhi removed gap before (T0547)A431 # TweakPhi removed gap before (T0547)I32 # TweakPsiPhi removed gap before (T0547)H384 # TweakPhi removed gap before (T0547)A276 # TweakPhi removed gap before (T0547)L418 # TweakPsiPhi removed gap before (T0547)A569 # TweakPhi removed gap before (T0547)S477 # TweakPsiSubtree removed gap before (T0547)S475 # TweakPsiPhi removed gap before (T0547)K113 # TweakPhi removed gap before (T0547)S490 # TweakPhi removed gap before (T0547)Y363 # TweakPhi removed gap before (T0547)L234 # TweakPsiPhi removed gap before (T0547)L118 # TweakPhi removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)E314 # TweakPsiPhi removed gap before (T0547)K171 # TweakPsiPhi removed gap before (T0547)Y4 # TweakPsiSubtree removed gap before (T0547)K526 # TweakPhi removed gap before (T0547)E220 # TweakPsiPhi removed gap before (T0547)L163 # TweakPhi removed gap before (T0547)E338 # TweakPhi removed gap before (T0547)G262 # TweakPsiPhi removed gap before (T0547)K102 # TweakPhi removed gap before (T0547)E294 # TweakPhi removed gap before (T0547)W454 # TweakPhi removed gap before (T0547)H568 # TweakPsiPhi removed gap before (T0547)M463 # TweakPsiPhi removed gap before (T0547)L49 # TweakPsiSubtree removed gap before (T0547)S555 # TweakPhi removed gap before (T0547)L258 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)E386 # TweakPhi removed gap before (T0547)I6 # TweakPsiSubtree removed gap before (T0547)I193 # TweakPhi removed gap before (T0547)N443 # TweakPhi removed gap before (T0547)L48 # TweakPsiPhi removed gap before (T0547)E278 # TweakPhi removed gap before (T0547)K543 # TweakPhi removed gap before (T0547)K423 # TweakPhi removed gap before (T0547)I478 # TweakPsiPhi removed gap before (T0547)G544 # TweakPsiSubtree removed gap before (T0547)E595 # TweakPsiPhi removed gap before (T0547)D383 # TweakPhi removed gap before (T0547)R474 # TweakPsiPhi removed gap before (T0547)V522 # generation 273: best score out of 40: T0547.try1-opt2 200.57257 cost/residue, 732 clashes 0.12776 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 457 299 / 1553 = 0.19253 0.00310 ## JiggleSubtree 3 56 34 / 678 = 0.05015 0.00365 ## JiggleSegment 5 57 38 / 563 = 0.06750 0.00410 ## OptSubtree 1 0 0 / 137 = 0.00000 0.00000 ## OptSegment 0 1 1 / 269 = 0.00372 0.00130 ## OptAllSegments 0 0 0 / 130 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 144 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 119 = 0.00000 0.00000 ## TweakPhiSubtree 80 735 437 / 2018 = 0.21655 0.00441 ## TweakPhiSegment 76 860 524 / 2018 = 0.25966 0.00454 ## TweakPsiSubtree 4 578 379 / 1939 = 0.19546 0.00432 ## TweakPsiSegment 6 1013 691 / 2784 = 0.24820 0.00564 ## TweakPsiPhiSubtree 266 749 461 / 1825 = 0.25260 0.00390 ## TweakPsiPhiSegment 211 680 405 / 1648 = 0.24575 0.00334 ## TweakHbondSubtree 31 387 230 / 1449 = 0.15873 0.00331 ## TweakHbondSegment 23 463 259 / 1529 = 0.16939 0.00366 ## TweakMultimer 558 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 92 401 268 / 905 = 0.29613 0.00153 ## FixOmega 4 0 0 / 127 = 0.00000 0.00000 ## Backrub 320 426 215 / 1058 = 0.20321 0.00214 ## BigBackrub 213 143 78 / 778 = 0.10026 0.00204 ## OneRotamer 0 450 221 / 2288 = 0.09659 0.00413 ## ClashingRotamer 2 3 1 / 206 = 0.00485 0.00063 ## ClusteredRotamer 21 5 3 / 194 = 0.01546 0.00061 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 276 = 0.00362 0.00010 ## CloseGap 0 22 6 / 299 = 0.02007 0.00546 ## HealGap 0 15 9 / 377 = 0.02387 0.00067 ## MoveGap 0 0 0 / 131 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 271 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 141 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 260 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 133 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 618 = 0.00000 0.00000 ## CrossOver 0 0 0 / 134 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 31 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 127 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 143 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)A268 # TweakPsiPhi removed gap before (T0547)G421 # TweakPsiPhi removed gap before (T0547)E343 # TweakPhi removed gap before (T0547)I15 # TweakPsiPhi removed gap before (T0547)K113 # TweakPhi removed gap before (T0547)Q281 # TweakPsiSubtree removed gap before (T0547)S608 # TweakPsiPhi removed gap before (T0547)T239 # TweakPsiSubtree removed gap before (T0547)D484 # TweakPhi removed gap before (T0547)K286 # TweakPsiPhi removed gap before (T0547)H410 # TweakPsiSubtree removed gap before (T0547)L399 # TweakPhi removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)L48 # TweakPsiSubtree removed gap before (T0547)Y4 # TweakPhi removed gap before (T0547)H527 # TweakPsiPhi removed gap before (T0547)Q226 # TweakPsiSubtree removed gap before (T0547)V131 # TweakPhi removed gap before (T0547)L160 # TweakPsiSubtree removed gap before (T0547)P178 # TweakPsiPhi removed gap before (T0547)Y491 # TweakPsiPhi removed gap before (T0547)I166 # TweakPhi removed gap before (T0547)A345 # TweakPsiPhi removed gap before (T0547)A127 # TweakPsiSubtree removed gap before (T0547)L606 # TweakPsiPhi removed gap before (T0547)N580 # TweakPsiSubtree removed gap before (T0547)K310 # TweakPhi removed gap before (T0547)N124 # TweakPhi removed gap before (T0547)F510 # TweakPhi removed gap before (T0547)G199 # TweakPsiPhi removed gap before (T0547)I212 # TweakPhi removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)M229 # TweakPsiPhi removed gap before (T0547)G455 # TweakPhi removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)M229 # TweakPsiPhi removed gap before (T0547)I573 # TweakPhi removed gap before (T0547)G111 # TweakPsiSubtree removed gap before (T0547)S445 # TweakPhi removed gap before (T0547)L511 # TweakPsiSubtree removed gap before (T0547)D562 # TweakPsiSubtree removed gap before (T0547)I592 # TweakPsiSubtree removed gap before (T0547)F392 # TweakPhi removed gap before (T0547)D572 # TweakPsiPhi removed gap before (T0547)I333 # TweakPsiSubtree removed gap before (T0547)E278 # TweakPhi removed gap before (T0547)I34 # generation 274: best score out of 40: T0547.try1-opt2 200.55394 cost/residue, 733 clashes 0.12752 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 458 299 / 1557 = 0.19204 0.00309 ## JiggleSubtree 3 56 34 / 679 = 0.05007 0.00365 ## JiggleSegment 5 57 38 / 563 = 0.06750 0.00410 ## OptSubtree 1 0 0 / 137 = 0.00000 0.00000 ## OptSegment 0 1 1 / 270 = 0.00370 0.00130 ## OptAllSegments 0 0 0 / 130 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 144 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 119 = 0.00000 0.00000 ## TweakPhiSubtree 80 736 438 / 2027 = 0.21608 0.00439 ## TweakPhiSegment 76 864 526 / 2029 = 0.25924 0.00453 ## TweakPsiSubtree 4 578 379 / 1940 = 0.19536 0.00431 ## TweakPsiSegment 6 1018 696 / 2797 = 0.24884 0.00566 ## TweakPsiPhiSubtree 267 751 462 / 1832 = 0.25218 0.00389 ## TweakPsiPhiSegment 211 684 407 / 1658 = 0.24548 0.00333 ## TweakHbondSubtree 31 387 230 / 1449 = 0.15873 0.00331 ## TweakHbondSegment 23 467 262 / 1541 = 0.17002 0.00365 ## TweakMultimer 559 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 92 404 270 / 911 = 0.29638 0.00153 ## FixOmega 4 0 0 / 127 = 0.00000 0.00000 ## Backrub 320 431 218 / 1070 = 0.20374 0.00215 ## BigBackrub 213 143 78 / 780 = 0.10000 0.00204 ## OneRotamer 0 450 221 / 2291 = 0.09646 0.00413 ## ClashingRotamer 2 3 1 / 206 = 0.00485 0.00063 ## ClusteredRotamer 21 5 3 / 195 = 0.01538 0.00060 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 277 = 0.00361 0.00009 ## CloseGap 0 22 6 / 300 = 0.02000 0.00544 ## HealGap 0 15 9 / 377 = 0.02387 0.00067 ## MoveGap 0 0 0 / 131 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 271 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 141 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 261 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 133 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 618 = 0.00000 0.00000 ## CrossOver 0 0 0 / 135 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 31 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 129 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 144 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)L108 # TweakPsiSubtree removed gap before (T0547)G192 # TweakPhi removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)H231 # TweakPhi removed gap before (T0547)S445 # TweakPsiPhi removed gap before (T0547)L54 # TweakPhi removed gap before (T0547)S608 # TweakPhi removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)Q437 # TweakPhi removed gap before (T0547)F530 # TweakPsiPhi removed gap before (T0547)I193 # TweakPsiSubtree removed gap before (T0547)Q458 # TweakPsiSubtree removed gap before (T0547)P178 # TweakPsiSubtree removed gap before (T0547)D422 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPsiPhi removed gap before (T0547)L97 # TweakPhi removed gap before (T0547)S475 # TweakPsiPhi removed gap before (T0547)I8 # TweakPsiSubtree removed gap before (T0547)F510 # TweakPsiPhi removed gap before (T0547)T413 # TweakPsiPhi removed gap before (T0547)I180 # TweakPhi removed gap before (T0547)I567 # TweakPhi removed gap before (T0547)A536 # TweakPhi removed gap before (T0547)L389 # TweakPsiSubtree removed gap before (T0547)I153 # TweakPsiSubtree removed gap before (T0547)D494 # TweakPhi removed gap before (T0547)I254 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPhi removed gap before (T0547)L515 # TweakPhi removed gap before (T0547)E386 # TweakPhi removed gap before (T0547)H329 # TweakPsiSubtree removed gap before (T0547)K352 # TweakPsiSubtree removed gap before (T0547)E435 # TweakPsiSubtree removed gap before (T0547)L182 # TweakPhi removed gap before (T0547)T473 # TweakPsiPhi removed gap before (T0547)N123 # TweakPhi removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)M229 # TweakPsiPhi removed gap before (T0547)R467 # TweakPsiPhi removed gap before (T0547)E457 # TweakPsiPhi removed gap before (T0547)L391 # TweakPsiPhi removed gap before (T0547)L258 # TweakPsiSubtree removed gap before (T0547)L224 # TweakPsiPhi removed gap before (T0547)A214 # TweakPsiPhi removed gap before (T0547)Y25 # TweakPsiSubtree removed gap before (T0547)K246 # TweakPsiSubtree removed gap before (T0547)G133 # TweakPhi removed gap before (T0547)L389 # TweakPsiSubtree removed gap before (T0547)R70 # TweakPhi removed gap before (T0547)Y440 # TweakPhi removed gap before (T0547)F66 # generation 275: best score out of 40: T0547.try1-opt2 200.51448 cost/residue, 731 clashes 0.12745 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 460 299 / 1560 = 0.19167 0.00308 ## JiggleSubtree 3 56 34 / 681 = 0.04993 0.00364 ## JiggleSegment 5 57 38 / 563 = 0.06750 0.00410 ## OptSubtree 1 0 0 / 138 = 0.00000 0.00000 ## OptSegment 0 1 1 / 270 = 0.00370 0.00130 ## OptAllSegments 0 0 0 / 130 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 144 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 119 = 0.00000 0.00000 ## TweakPhiSubtree 81 739 440 / 2042 = 0.21548 0.00436 ## TweakPhiSegment 76 869 528 / 2037 = 0.25920 0.00455 ## TweakPsiSubtree 4 580 379 / 1945 = 0.19486 0.00430 ## TweakPsiSegment 6 1023 698 / 2811 = 0.24831 0.00565 ## TweakPsiPhiSubtree 267 756 464 / 1839 = 0.25231 0.00390 ## TweakPsiPhiSegment 211 686 409 / 1665 = 0.24565 0.00333 ## TweakHbondSubtree 31 387 230 / 1449 = 0.15873 0.00331 ## TweakHbondSegment 23 472 265 / 1558 = 0.17009 0.00363 ## TweakMultimer 562 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 92 405 271 / 920 = 0.29457 0.00152 ## FixOmega 4 0 0 / 127 = 0.00000 0.00000 ## Backrub 320 432 218 / 1074 = 0.20298 0.00214 ## BigBackrub 213 143 78 / 780 = 0.10000 0.00204 ## OneRotamer 0 451 221 / 2295 = 0.09630 0.00412 ## ClashingRotamer 2 3 1 / 206 = 0.00485 0.00063 ## ClusteredRotamer 21 5 3 / 195 = 0.01538 0.00060 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 278 = 0.00360 0.00009 ## CloseGap 0 22 6 / 300 = 0.02000 0.00544 ## HealGap 0 15 9 / 378 = 0.02381 0.00067 ## MoveGap 0 0 0 / 131 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 271 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 141 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 261 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 133 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 619 = 0.00000 0.00000 ## CrossOver 0 0 0 / 135 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 31 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 129 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 145 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)W479 # TweakPsiSubtree removed gap before (T0547)M450 # TweakPsiPhi removed gap before (T0547)K245 # TweakPhi removed gap before (T0547)I241 # TweakPsiSubtree removed gap before (T0547)L499 # TweakPhi removed gap before (T0547)K171 # TweakPhi removed gap before (T0547)N152 # TweakPhi removed gap before (T0547)L441 # TweakPsiPhi removed gap before (T0547)N425 # TweakPhi removed gap before (T0547)G107 # TweakPsiSubtree removed gap before (T0547)R185 # TweakPsiSubtree removed gap before (T0547)G133 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPhi removed gap before (T0547)K543 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPhi removed gap before (T0547)I417 # TweakPhi removed gap before (T0547)S381 # TweakPhi removed gap before (T0547)R50 # TweakPhi removed gap before (T0547)S445 # TweakPsiSubtree removed gap before (T0547)P464 # TweakPsiPhi removed gap before (T0547)Q226 # TweakPsiSubtree removed gap before (T0547)G610 # TweakPhi removed gap before (T0547)E521 # TweakPsiPhi removed gap before (T0547)Q448 # TweakPsiPhi removed gap before (T0547)L54 # TweakPsiPhi removed gap before (T0547)E250 # TweakPsiPhi removed gap before (T0547)I350 # TweakPsiPhi removed gap before (T0547)A170 # TweakPsiSubtree removed gap before (T0547)L349 # TweakPhi removed gap before (T0547)F134 # TweakPsiPhi removed gap before (T0547)I417 # TweakPsiSubtree removed gap before (T0547)V35 # TweakPhi removed gap before (T0547)L411 # TweakPhi removed gap before (T0547)E148 # TweakPsiPhi removed gap before (T0547)E285 # TweakPhi removed gap before (T0547)Y255 # TweakPhi removed gap before (T0547)A268 # TweakPsiPhi removed gap before (T0547)E314 # TweakPsiPhi removed gap before (T0547)Q437 # TweakPsiPhi removed gap before (T0547)S112 # TweakPhi removed gap before (T0547)L511 # TweakPsiSubtree removed gap before (T0547)S475 # TweakPsiPhi removed gap before (T0547)E521 # TweakPhi removed gap before (T0547)E148 # TweakPhi removed gap before (T0547)L389 # TweakPsiPhi removed gap before (T0547)F530 # TweakPsiPhi removed gap before (T0547)E561 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPsiPhi removed gap before (T0547)K353 # TweakPsiSubtree removed gap before (T0547)I550 # generation 276: best score out of 40: T0547.try1-opt2 200.49631 cost/residue, 732 clashes 0.12758 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 463 300 / 1566 = 0.19157 0.00308 ## JiggleSubtree 3 56 34 / 686 = 0.04956 0.00361 ## JiggleSegment 5 57 38 / 564 = 0.06738 0.00409 ## OptSubtree 1 0 0 / 138 = 0.00000 0.00000 ## OptSegment 0 1 1 / 270 = 0.00370 0.00130 ## OptAllSegments 0 0 0 / 130 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 145 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 119 = 0.00000 0.00000 ## TweakPhiSubtree 82 742 444 / 2053 = 0.21627 0.00437 ## TweakPhiSegment 77 872 531 / 2048 = 0.25928 0.00453 ## TweakPsiSubtree 4 582 381 / 1950 = 0.19538 0.00430 ## TweakPsiSegment 7 1025 698 / 2819 = 0.24761 0.00563 ## TweakPsiPhiSubtree 268 760 466 / 1851 = 0.25176 0.00389 ## TweakPsiPhiSegment 215 690 410 / 1673 = 0.24507 0.00332 ## TweakHbondSubtree 31 387 230 / 1450 = 0.15862 0.00331 ## TweakHbondSegment 24 475 265 / 1569 = 0.16890 0.00361 ## TweakMultimer 565 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 92 408 273 / 930 = 0.29355 0.00152 ## FixOmega 4 0 0 / 127 = 0.00000 0.00000 ## Backrub 320 434 219 / 1076 = 0.20353 0.00215 ## BigBackrub 213 143 78 / 780 = 0.10000 0.00204 ## OneRotamer 0 451 221 / 2296 = 0.09625 0.00412 ## ClashingRotamer 2 3 1 / 207 = 0.00483 0.00063 ## ClusteredRotamer 21 5 3 / 196 = 0.01531 0.00060 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 278 = 0.00360 0.00009 ## CloseGap 0 22 6 / 300 = 0.02000 0.00544 ## HealGap 0 15 9 / 378 = 0.02381 0.00067 ## MoveGap 0 0 0 / 131 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 272 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 141 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 262 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 134 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 619 = 0.00000 0.00000 ## CrossOver 0 0 0 / 135 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 32 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 129 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 146 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)M120 # TweakPsiSubtree removed gap before (T0547)D393 # TweakPhi removed gap before (T0547)G42 # TweakPhi removed gap before (T0547)Y396 # TweakPhi removed gap before (T0547)E376 # TweakPsiSubtree removed gap before (T0547)S202 # TweakPsiSubtree removed gap before (T0547)Q281 # TweakPsiSubtree removed gap before (T0547)F324 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)F301 # TweakPhi removed gap before (T0547)I319 # TweakPhi removed gap before (T0547)L266 # TweakPsiPhi removed gap before (T0547)E343 # TweakPhi removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)L399 # TweakPsiSubtree removed gap before (T0547)F392 # TweakPhi removed gap before (T0547)V522 # TweakPhi removed gap before (T0547)D586 # TweakPsiPhi removed gap before (T0547)I8 # TweakPhi removed gap before (T0547)L163 # TweakPsiPhi removed gap before (T0547)L560 # TweakPhi removed gap before (T0547)V436 # TweakPsiPhi removed gap before (T0547)N11 # TweakPhi removed gap before (T0547)N253 # TweakPsiPhi removed gap before (T0547)S539 # TweakPsiPhi removed gap before (T0547)A307 # TweakPsiPhi removed gap before (T0547)Q520 # TweakPsiPhi removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)A276 # TweakPhi removed gap before (T0547)K57 # TweakPhi removed gap before (T0547)Q588 # TweakPsiSubtree removed gap before (T0547)H410 # TweakPhi removed gap before (T0547)A147 # TweakPhi removed gap before (T0547)L139 # TweakPhi removed gap before (T0547)S112 # TweakPsiPhi removed gap before (T0547)L574 # TweakPsiPhi removed gap before (T0547)I570 # TweakPhi removed gap before (T0547)Y279 # TweakPsiPhi removed gap before (T0547)I489 # TweakPsiPhi removed gap before (T0547)E535 # TweakPhi removed gap before (T0547)L375 # TweakPhi removed gap before (T0547)A147 # TweakPhi removed gap before (T0547)D422 # TweakPhi removed gap before (T0547)K370 # TweakPhi removed gap before (T0547)F301 # TweakPsiSubtree removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)E470 # TweakPsiSubtree removed gap before (T0547)K246 # TweakPsiPhi removed gap before (T0547)R39 # TweakPhi removed gap before (T0547)K506 # TweakPsiPhi removed gap before (T0547)D383 # BackrubGuts cancelled---proline or break # generation 277: best score out of 40: T0547.try1-opt2 200.46887 cost/residue, 732 clashes 0.12774 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 464 302 / 1571 = 0.19223 0.00308 ## JiggleSubtree 3 56 34 / 687 = 0.04949 0.00361 ## JiggleSegment 5 57 38 / 565 = 0.06726 0.00408 ## OptSubtree 1 0 0 / 138 = 0.00000 0.00000 ## OptSegment 0 1 1 / 272 = 0.00368 0.00129 ## OptAllSegments 0 0 0 / 131 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 145 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 119 = 0.00000 0.00000 ## TweakPhiSubtree 83 746 446 / 2070 = 0.21546 0.00434 ## TweakPhiSegment 77 878 534 / 2058 = 0.25948 0.00454 ## TweakPsiSubtree 4 582 381 / 1954 = 0.19498 0.00429 ## TweakPsiSegment 7 1028 701 / 2825 = 0.24814 0.00563 ## TweakPsiPhiSubtree 270 762 468 / 1859 = 0.25175 0.00388 ## TweakPsiPhiSegment 215 692 411 / 1680 = 0.24464 0.00332 ## TweakHbondSubtree 31 387 231 / 1451 = 0.15920 0.00331 ## TweakHbondSegment 24 478 266 / 1582 = 0.16814 0.00358 ## TweakMultimer 569 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 93 410 277 / 940 = 0.29468 0.00152 ## FixOmega 4 0 0 / 127 = 0.00000 0.00000 ## Backrub 322 436 220 / 1083 = 0.20314 0.00215 ## BigBackrub 213 143 78 / 780 = 0.10000 0.00204 ## OneRotamer 0 451 221 / 2299 = 0.09613 0.00411 ## ClashingRotamer 2 3 1 / 207 = 0.00483 0.00063 ## ClusteredRotamer 21 5 3 / 196 = 0.01531 0.00060 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 278 = 0.00360 0.00009 ## CloseGap 0 22 6 / 301 = 0.01993 0.00542 ## HealGap 0 15 9 / 378 = 0.02381 0.00067 ## MoveGap 0 0 0 / 132 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 272 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 141 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 262 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 134 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 621 = 0.00000 0.00000 ## CrossOver 0 0 0 / 135 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 32 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 129 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 146 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)S341 # TweakPsiPhi removed gap before (T0547)N404 # TweakPhi removed gap before (T0547)V336 # TweakPhi removed gap before (T0547)L394 # TweakPsiPhi removed gap before (T0547)K20 # TweakPsiPhi removed gap before (T0547)K311 # TweakPhi removed gap before (T0547)R467 # TweakPsiPhi removed gap before (T0547)G107 # TweakPhi removed gap before (T0547)K135 # TweakPsiSubtree removed gap before (T0547)K245 # TweakPhi removed gap before (T0547)W9 # TweakPsiPhi removed gap before (T0547)L557 # TweakPsiPhi removed gap before (T0547)F510 # TweakPsiPhi removed gap before (T0547)T473 # TweakPhi removed gap before (T0547)E294 # TweakPsiPhi removed gap before (T0547)F340 # TweakPhi removed gap before (T0547)S197 # TweakPsiPhi removed gap before (T0547)D422 # TweakPhi removed gap before (T0547)V35 # TweakPhi removed gap before (T0547)F447 # TweakPsiPhi removed gap before (T0547)K113 # TweakPhi removed gap before (T0547)G273 # TweakPsiPhi removed gap before (T0547)R293 # TweakPsiPhi removed gap before (T0547)Y122 # TweakPhi removed gap before (T0547)N249 # TweakPhi removed gap before (T0547)L155 # TweakPhi removed gap before (T0547)K246 # TweakPsiPhi removed gap before (T0547)K267 # TweakPsiSubtree removed gap before (T0547)H568 # TweakPsiPhi removed gap before (T0547)A69 # TweakPsiSubtree removed gap before (T0547)L389 # TweakPhi removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)H527 # TweakPsiSubtree removed gap before (T0547)L292 # TweakPhi removed gap before (T0547)L100 # TweakPhi removed gap before (T0547)R474 # TweakPhi removed gap before (T0547)L418 # TweakPhi removed gap before (T0547)N305 # TweakPsiSubtree removed gap before (T0547)K135 # TweakPsiSubtree removed gap before (T0547)K423 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)S490 # TweakPsiSubtree removed gap before (T0547)E343 # TweakPhi removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)G101 # TweakPsiSubtree removed gap before (T0547)V215 # TweakPsiPhi removed gap before (T0547)S372 # TweakPhi removed gap before (T0547)A330 # TweakPhi removed gap before (T0547)F232 # TweakPhi removed gap before (T0547)L365 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPhi removed gap before (T0547)K506 # TweakPsiSubtree removed gap before (T0547)I129 # TweakPsiSubtree removed gap before (T0547)L258 # TweakPhi removed gap before (T0547)L248 # TweakPsiPhi removed gap before (T0547)G143 # generation 278: best score out of 40: T0547.try1-opt2 200.45847 cost/residue, 732 clashes 0.12764 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 465 302 / 1577 = 0.19150 0.00307 ## JiggleSubtree 3 56 34 / 688 = 0.04942 0.00360 ## JiggleSegment 5 57 38 / 565 = 0.06726 0.00408 ## OptSubtree 1 0 0 / 138 = 0.00000 0.00000 ## OptSegment 0 1 1 / 272 = 0.00368 0.00129 ## OptAllSegments 0 0 0 / 131 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 145 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 119 = 0.00000 0.00000 ## TweakPhiSubtree 83 755 451 / 2088 = 0.21600 0.00432 ## TweakPhiSegment 77 881 538 / 2069 = 0.26003 0.00453 ## TweakPsiSubtree 4 583 382 / 1959 = 0.19500 0.00428 ## TweakPsiSegment 7 1030 702 / 2832 = 0.24788 0.00562 ## TweakPsiPhiSubtree 273 764 471 / 1872 = 0.25160 0.00386 ## TweakPsiPhiSegment 216 696 412 / 1686 = 0.24437 0.00331 ## TweakHbondSubtree 31 387 231 / 1452 = 0.15909 0.00330 ## TweakHbondSegment 24 479 268 / 1590 = 0.16855 0.00358 ## TweakMultimer 571 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 93 413 278 / 948 = 0.29325 0.00152 ## FixOmega 4 0 0 / 127 = 0.00000 0.00000 ## Backrub 323 438 220 / 1088 = 0.20221 0.00214 ## BigBackrub 213 143 78 / 781 = 0.09987 0.00204 ## OneRotamer 0 452 221 / 2301 = 0.09605 0.00411 ## ClashingRotamer 2 3 1 / 208 = 0.00481 0.00063 ## ClusteredRotamer 21 5 3 / 198 = 0.01515 0.00060 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 278 = 0.00360 0.00009 ## CloseGap 0 22 6 / 301 = 0.01993 0.00542 ## HealGap 0 15 9 / 381 = 0.02362 0.00066 ## MoveGap 0 0 0 / 132 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 273 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 141 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 262 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 134 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 621 = 0.00000 0.00000 ## CrossOver 0 0 0 / 135 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 32 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 129 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 147 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)G181 # TweakPsiSubtree removed gap before (T0547)L583 # TweakPsiPhi removed gap before (T0547)L116 # TweakPsiPhi removed gap before (T0547)I169 # TweakPhi removed gap before (T0547)Q400 # TweakPsiSubtree removed gap before (T0547)I302 # TweakPhi removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)D41 # TweakPsiSubtree removed gap before (T0547)K304 # TweakPsiSubtree removed gap before (T0547)R402 # TweakPsiSubtree removed gap before (T0547)S381 # TweakPsiPhi removed gap before (T0547)A268 # TweakPsiSubtree removed gap before (T0547)G101 # TweakPsiSubtree removed gap before (T0547)T473 # TweakPhi removed gap before (T0547)K506 # TweakPhi removed gap before (T0547)H231 # TweakPsiPhi removed gap before (T0547)K76 # TweakPhi removed gap before (T0547)A147 # TweakPhi removed gap before (T0547)E37 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)L223 # TweakPsiSubtree removed gap before (T0547)K28 # TweakPsiPhi removed gap before (T0547)E26 # TweakPsiSubtree removed gap before (T0547)T531 # TweakPsiSubtree removed gap before (T0547)L529 # TweakPhi removed gap before (T0547)T409 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)G45 # TweakPhi removed gap before (T0547)G101 # TweakPsiSubtree removed gap before (T0547)E164 # TweakPsiPhi removed gap before (T0547)E213 # TweakPsiSubtree removed gap before (T0547)R50 # TweakPhi removed gap before (T0547)F204 # TweakPhi removed gap before (T0547)F282 # TweakPhi removed gap before (T0547)I34 # TweakPsiSubtree removed gap before (T0547)R577 # TweakPsiPhi removed gap before (T0547)S403 # TweakPhi removed gap before (T0547)I59 # TweakPsiSubtree removed gap before (T0547)Y519 # TweakPhi removed gap before (T0547)E308 # TweakPhi removed gap before (T0547)G610 # TweakPsiSubtree removed gap before (T0547)E376 # TweakPhi removed gap before (T0547)S208 # TweakPsiPhi removed gap before (T0547)C483 # TweakPhi removed gap before (T0547)N373 # TweakPsiPhi removed gap before (T0547)G544 # TweakPhi removed gap before (T0547)L468 # TweakPhi removed gap before (T0547)R259 # TweakPhi removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)K71 # TweakPhi removed gap before (T0547)V502 # TweakPsiSubtree removed gap before (T0547)L389 # TweakPsiPhi removed gap before (T0547)F530 # TweakPsiSubtree removed gap before (T0547)K99 # TweakPhi removed gap before (T0547)H527 # TweakPsiSubtree removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)H591 # TweakPsiPhi removed gap before (T0547)E576 # TweakPhi removed gap before (T0547)K246 # TweakPhi removed gap before (T0547)L337 # TweakPsiPhi removed gap before (T0547)T228 # TweakPsiPhi removed gap before (T0547)D393 # TweakPsiPhi removed gap before (T0547)L598 # TweakPhi removed gap before (T0547)N141 # generation 279: best score out of 40: T0547.try1-opt2 200.34380 cost/residue, 729 clashes 0.12775 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 468 306 / 1584 = 0.19318 0.00307 ## JiggleSubtree 3 56 34 / 689 = 0.04935 0.00360 ## JiggleSegment 5 57 38 / 565 = 0.06726 0.00408 ## OptSubtree 1 0 0 / 138 = 0.00000 0.00000 ## OptSegment 0 1 1 / 272 = 0.00368 0.00129 ## OptAllSegments 0 0 0 / 131 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 145 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 119 = 0.00000 0.00000 ## TweakPhiSubtree 84 759 454 / 2105 = 0.21568 0.00430 ## TweakPhiSegment 77 885 540 / 2080 = 0.25962 0.00453 ## TweakPsiSubtree 4 583 382 / 1961 = 0.19480 0.00428 ## TweakPsiSegment 7 1036 709 / 2851 = 0.24868 0.00563 ## TweakPsiPhiSubtree 277 768 473 / 1882 = 0.25133 0.00386 ## TweakPsiPhiSegment 219 697 413 / 1693 = 0.24395 0.00330 ## TweakHbondSubtree 31 387 231 / 1454 = 0.15887 0.00330 ## TweakHbondSegment 24 481 268 / 1602 = 0.16729 0.00355 ## TweakMultimer 572 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 93 418 283 / 957 = 0.29572 0.00157 ## FixOmega 4 0 0 / 129 = 0.00000 0.00000 ## Backrub 325 438 220 / 1088 = 0.20221 0.00214 ## BigBackrub 213 143 78 / 781 = 0.09987 0.00204 ## OneRotamer 0 452 221 / 2301 = 0.09605 0.00411 ## ClashingRotamer 2 3 1 / 209 = 0.00478 0.00062 ## ClusteredRotamer 21 5 3 / 198 = 0.01515 0.00060 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 278 = 0.00360 0.00009 ## CloseGap 0 22 6 / 301 = 0.01993 0.00542 ## HealGap 0 15 9 / 381 = 0.02362 0.00066 ## MoveGap 0 0 0 / 132 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 273 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 141 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 262 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 134 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 621 = 0.00000 0.00000 ## CrossOver 0 0 0 / 135 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 32 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 129 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 147 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)S477 # TweakPhi removed gap before (T0547)M120 # TweakPsiPhi removed gap before (T0547)N249 # TweakPsiSubtree removed gap before (T0547)I350 # TweakPhi removed gap before (T0547)T409 # TweakPhi removed gap before (T0547)D40 # TweakPsiPhi removed gap before (T0547)S403 # TweakPsiSubtree removed gap before (T0547)D7 # TweakPsiSubtree removed gap before (T0547)N528 # TweakPsiSubtree removed gap before (T0547)F447 # TweakPsiSubtree removed gap before (T0547)K352 # TweakPsiPhi removed gap before (T0547)Y83 # TweakPsiPhi removed gap before (T0547)N373 # TweakPsiSubtree removed gap before (T0547)S555 # TweakPhi removed gap before (T0547)S208 # TweakPhi removed gap before (T0547)K283 # TweakPsiSubtree removed gap before (T0547)L523 # TweakPhi removed gap before (T0547)H233 # TweakPsiSubtree removed gap before (T0547)N601 # TweakPsiSubtree removed gap before (T0547)T390 # TweakPhi removed gap before (T0547)T390 # TweakPhi removed gap before (T0547)I157 # TweakPhi removed gap before (T0547)F14 # TweakPsiSubtree removed gap before (T0547)I59 # TweakPhi removed gap before (T0547)L600 # TweakPsiSubtree removed gap before (T0547)L217 # TweakPsiPhi removed gap before (T0547)G274 # TweakPsiPhi removed gap before (T0547)D452 # TweakPsiSubtree removed gap before (T0547)I412 # TweakPsiPhi removed gap before (T0547)L49 # TweakPsiSubtree removed gap before (T0547)P128 # TweakPsiPhi removed gap before (T0547)H187 # TweakPsiPhi removed gap before (T0547)E435 # TweakPsiSubtree removed gap before (T0547)H410 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)L365 # TweakPhi removed gap before (T0547)S236 # TweakPsiPhi removed gap before (T0547)K171 # TweakPhi removed gap before (T0547)I417 # TweakPhi removed gap before (T0547)N201 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Y366 # TweakPhi removed gap before (T0547)E240 # BackrubGuts cancelled---proline or break # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPhi removed gap before (T0547)I382 # TweakPsiSubtree removed gap before (T0547)Q237 # TweakPhi removed gap before (T0547)V331 # TweakPhi removed gap before (T0547)N601 # TweakPsiSubtree removed gap before (T0547)K71 # TweakPhi removed gap before (T0547)R70 # TweakPsiSubtree removed gap before (T0547)K582 # generation 280: best score out of 40: T0547.try1-opt2 200.33948 cost/residue, 729 clashes 0.12775 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 471 308 / 1594 = 0.19322 0.00305 ## JiggleSubtree 3 56 34 / 691 = 0.04920 0.00358 ## JiggleSegment 5 57 38 / 565 = 0.06726 0.00408 ## OptSubtree 1 0 0 / 138 = 0.00000 0.00000 ## OptSegment 0 1 1 / 272 = 0.00368 0.00129 ## OptAllSegments 0 0 0 / 131 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 146 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 119 = 0.00000 0.00000 ## TweakPhiSubtree 84 761 455 / 2117 = 0.21493 0.00427 ## TweakPhiSegment 78 888 540 / 2089 = 0.25850 0.00451 ## TweakPsiSubtree 4 583 382 / 1965 = 0.19440 0.00427 ## TweakPsiSegment 7 1040 713 / 2865 = 0.24887 0.00564 ## TweakPsiPhiSubtree 281 770 475 / 1889 = 0.25146 0.00386 ## TweakPsiPhiSegment 219 699 414 / 1699 = 0.24367 0.00329 ## TweakHbondSubtree 31 387 231 / 1455 = 0.15876 0.00330 ## TweakHbondSegment 24 484 268 / 1611 = 0.16636 0.00353 ## TweakMultimer 578 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 93 426 290 / 972 = 0.29835 0.00158 ## FixOmega 4 0 0 / 129 = 0.00000 0.00000 ## Backrub 329 440 221 / 1091 = 0.20257 0.00214 ## BigBackrub 213 143 78 / 781 = 0.09987 0.00204 ## OneRotamer 0 453 221 / 2303 = 0.09596 0.00411 ## ClashingRotamer 2 3 1 / 209 = 0.00478 0.00062 ## ClusteredRotamer 21 5 3 / 198 = 0.01515 0.00060 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 278 = 0.00360 0.00009 ## CloseGap 0 22 6 / 302 = 0.01987 0.00541 ## HealGap 0 15 9 / 381 = 0.02362 0.00066 ## MoveGap 0 0 0 / 132 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 273 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 142 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 262 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 134 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 622 = 0.00000 0.00000 ## CrossOver 0 0 0 / 135 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 32 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 130 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 148 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)I359 # TweakPsiPhi removed gap before (T0547)Q56 # TweakPsiPhi removed gap before (T0547)E115 # TweakPsiPhi removed gap before (T0547)D3 # TweakPhi removed gap before (T0547)A165 # TweakPsiPhi removed gap before (T0547)D393 # TweakPsiPhi removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)I417 # TweakPsiPhi removed gap before (T0547)F14 # TweakPsiPhi removed gap before (T0547)A345 # TweakPhi removed gap before (T0547)E294 # TweakPhi removed gap before (T0547)L391 # TweakPsiPhi removed gap before (T0547)K203 # TweakPhi removed gap before (T0547)F144 # TweakPhi removed gap before (T0547)E240 # TweakPsiSubtree removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)R173 # TweakPhi removed gap before (T0547)L303 # TweakPsiSubtree removed gap before (T0547)R39 # TweakPsiSubtree removed gap before (T0547)G544 # TweakPhi removed gap before (T0547)D486 # TweakPhi removed gap before (T0547)A165 # TweakPsiSubtree removed gap before (T0547)Q520 # TweakPsiSubtree removed gap before (T0547)A536 # TweakPhi removed gap before (T0547)A170 # TweakPhi removed gap before (T0547)K414 # TweakPsiPhi removed gap before (T0547)Q58 # TweakPsiPhi removed gap before (T0547)D298 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)F232 # TweakPsiSubtree removed gap before (T0547)D564 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)A405 # TweakPsiSubtree removed gap before (T0547)F392 # TweakPhi removed gap before (T0547)V300 # TweakPsiPhi removed gap before (T0547)A427 # TweakPsiSubtree removed gap before (T0547)Y519 # TweakPsiSubtree removed gap before (T0547)L47 # TweakPsiPhi removed gap before (T0547)K423 # TweakPsiSubtree removed gap before (T0547)L100 # TweakPsiPhi removed gap before (T0547)S387 # TweakPhi removed gap before (T0547)I592 # TweakPsiSubtree removed gap before (T0547)Q309 # TweakPsiSubtree removed gap before (T0547)L217 # TweakPhi removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)S112 # TweakPsiPhi removed gap before (T0547)K196 # TweakPsiSubtree removed gap before (T0547)L446 # TweakPsiSubtree removed gap before (T0547)L266 # TweakPhi removed gap before (T0547)S236 # TweakPsiPhi removed gap before (T0547)I333 # TweakPsiPhi removed gap before (T0547)V215 # TweakPsiSubtree removed gap before (T0547)S321 # TweakPsiSubtree removed gap before (T0547)R323 # generation 281: best score out of 40: T0547.try1-opt2 200.31041 cost/residue, 729 clashes 0.12777 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 473 309 / 1600 = 0.19312 0.00304 ## JiggleSubtree 3 56 34 / 692 = 0.04913 0.00358 ## JiggleSegment 5 57 38 / 565 = 0.06726 0.00408 ## OptSubtree 1 0 0 / 138 = 0.00000 0.00000 ## OptSegment 0 1 1 / 272 = 0.00368 0.00129 ## OptAllSegments 0 0 0 / 133 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 146 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 119 = 0.00000 0.00000 ## TweakPhiSubtree 85 762 456 / 2124 = 0.21469 0.00426 ## TweakPhiSegment 78 891 540 / 2099 = 0.25727 0.00449 ## TweakPsiSubtree 4 583 382 / 1968 = 0.19411 0.00426 ## TweakPsiSegment 7 1048 717 / 2883 = 0.24870 0.00561 ## TweakPsiPhiSubtree 282 774 477 / 1901 = 0.25092 0.00384 ## TweakPsiPhiSegment 220 703 414 / 1706 = 0.24267 0.00328 ## TweakHbondSubtree 31 387 231 / 1456 = 0.15865 0.00329 ## TweakHbondSegment 24 484 268 / 1616 = 0.16584 0.00352 ## TweakMultimer 584 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 94 431 294 / 986 = 0.29817 0.00159 ## FixOmega 4 0 0 / 130 = 0.00000 0.00000 ## Backrub 331 444 222 / 1096 = 0.20255 0.00215 ## BigBackrub 213 143 78 / 781 = 0.09987 0.00204 ## OneRotamer 0 454 222 / 2306 = 0.09627 0.00410 ## ClashingRotamer 2 3 1 / 209 = 0.00478 0.00062 ## ClusteredRotamer 21 5 3 / 198 = 0.01515 0.00060 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 278 = 0.00360 0.00009 ## CloseGap 0 22 6 / 303 = 0.01980 0.00539 ## HealGap 0 15 9 / 382 = 0.02356 0.00066 ## MoveGap 0 0 0 / 132 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 273 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 142 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 262 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 134 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 624 = 0.00000 0.00000 ## CrossOver 0 0 0 / 136 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 32 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 130 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 148 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)L223 # TweakPsiSubtree removed gap before (T0547)E308 # TweakPhi removed gap before (T0547)G421 # TweakPsiPhi removed gap before (T0547)D401 # TweakPhi removed gap before (T0547)L399 # TweakPsiSubtree removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)T413 # TweakPhi removed gap before (T0547)E386 # TweakPsiSubtree removed gap before (T0547)D393 # TweakPhi removed gap before (T0547)S280 # TweakPsiSubtree removed gap before (T0547)D33 # TweakPsiPhi removed gap before (T0547)S321 # TweakPhi removed gap before (T0547)L332 # TweakPhi removed gap before (T0547)D298 # TweakPsiPhi removed gap before (T0547)I333 # TweakPsiSubtree removed gap before (T0547)L378 # TweakPsiSubtree removed gap before (T0547)S387 # TweakPsiSubtree removed gap before (T0547)G517 # TweakPhi removed gap before (T0547)K86 # TweakPhi removed gap before (T0547)I359 # TweakPsiSubtree removed gap before (T0547)G42 # TweakPsiPhi removed gap before (T0547)K304 # TweakPhi removed gap before (T0547)A345 # TweakPsiPhi removed gap before (T0547)K68 # TweakPhi removed gap before (T0547)H53 # TweakPsiSubtree removed gap before (T0547)V442 # TweakPsiSubtree removed gap before (T0547)L223 # TweakPhi removed gap before (T0547)M2 # TweakPhi removed gap before (T0547)G78 # TweakPsiSubtree removed gap before (T0547)D558 # TweakPsiSubtree removed gap before (T0547)K68 # TweakPsiPhi removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)Y75 # TweakPhi removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)E285 # TweakPsiPhi removed gap before (T0547)A69 # TweakPhi removed gap before (T0547)F14 # TweakPsiPhi removed gap before (T0547)V21 # TweakPhi removed gap before (T0547)I382 # TweakPsiSubtree removed gap before (T0547)G64 # TweakPsiPhi removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)D3 # TweakPsiSubtree removed gap before (T0547)F444 # TweakPsiSubtree removed gap before (T0547)K86 # TweakPhi removed gap before (T0547)G19 # TweakPsiSubtree removed gap before (T0547)F460 # TweakPsiPhi removed gap before (T0547)V331 # TweakPsiPhi removed gap before (T0547)H329 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K415 # TweakPhi removed gap before (T0547)G594 # TweakPsiSubtree removed gap before (T0547)K17 # TweakPsiPhi removed gap before (T0547)E158 # TweakPsiSubtree removed gap before (T0547)R39 # TweakPsiPhi removed gap before (T0547)R577 # TweakPsiPhi removed gap before (T0547)T531 # TweakPhi removed gap before (T0547)S280 # generation 282: best score out of 40: T0547.try1-opt2 200.31041 cost/residue, 729 clashes 0.12777 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 475 310 / 1604 = 0.19327 0.00304 ## JiggleSubtree 3 56 34 / 693 = 0.04906 0.00357 ## JiggleSegment 5 57 38 / 565 = 0.06726 0.00408 ## OptSubtree 1 0 0 / 139 = 0.00000 0.00000 ## OptSegment 0 1 1 / 272 = 0.00368 0.00129 ## OptAllSegments 0 0 0 / 133 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 146 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 119 = 0.00000 0.00000 ## TweakPhiSubtree 85 766 458 / 2133 = 0.21472 0.00425 ## TweakPhiSegment 78 893 543 / 2113 = 0.25698 0.00449 ## TweakPsiSubtree 4 584 383 / 1974 = 0.19402 0.00426 ## TweakPsiSegment 7 1053 720 / 2899 = 0.24836 0.00560 ## TweakPsiPhiSubtree 283 775 477 / 1911 = 0.24961 0.00382 ## TweakPsiPhiSegment 222 707 415 / 1711 = 0.24255 0.00327 ## TweakHbondSubtree 31 387 231 / 1457 = 0.15854 0.00329 ## TweakHbondSegment 25 485 269 / 1623 = 0.16574 0.00351 ## TweakMultimer 586 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 94 433 294 / 992 = 0.29637 0.00158 ## FixOmega 4 0 0 / 130 = 0.00000 0.00000 ## Backrub 332 448 225 / 1107 = 0.20325 0.00216 ## BigBackrub 213 143 78 / 782 = 0.09974 0.00203 ## OneRotamer 0 454 222 / 2309 = 0.09615 0.00410 ## ClashingRotamer 2 3 1 / 209 = 0.00478 0.00062 ## ClusteredRotamer 21 5 3 / 198 = 0.01515 0.00060 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 278 = 0.00360 0.00009 ## CloseGap 0 22 6 / 303 = 0.01980 0.00539 ## HealGap 0 15 9 / 383 = 0.02350 0.00066 ## MoveGap 0 0 0 / 132 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 274 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 142 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 262 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 134 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 625 = 0.00000 0.00000 ## CrossOver 0 0 0 / 136 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 32 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 131 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 149 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)A251 # TweakPsiPhi removed gap before (T0547)I478 # TweakPsiPhi removed gap before (T0547)S485 # TweakPhi removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)D469 # TweakPsiPhi removed gap before (T0547)I317 # TweakPhi removed gap before (T0547)A476 # TweakPsiPhi removed gap before (T0547)F14 # TweakPsiSubtree removed gap before (T0547)L441 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)N11 # TweakPhi removed gap before (T0547)Q89 # TweakPhi removed gap before (T0547)T534 # TweakPhi removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)A553 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I567 # TweakPsiSubtree removed gap before (T0547)Y104 # TweakPsiPhi removed gap before (T0547)V611 # TweakPsiSubtree removed gap before (T0547)N11 # TweakPhi removed gap before (T0547)Y83 # TweakPsiPhi removed gap before (T0547)L385 # TweakPhi removed gap before (T0547)A569 # TweakPhi removed gap before (T0547)K267 # TweakPsiSubtree removed gap before (T0547)D360 # TweakPhi removed gap before (T0547)L337 # TweakPhi removed gap before (T0547)H379 # TweakPhi removed gap before (T0547)T413 # TweakPsiSubtree removed gap before (T0547)H500 # TweakPsiSubtree removed gap before (T0547)I573 # TweakPsiPhi removed gap before (T0547)A476 # TweakPhi removed gap before (T0547)D393 # TweakPsiPhi removed gap before (T0547)R474 # TweakPsiPhi removed gap before (T0547)H532 # TweakPhi removed gap before (T0547)G126 # TweakPhi removed gap before (T0547)G159 # TweakPhi removed gap before (T0547)E561 # TweakPsiPhi removed gap before (T0547)V87 # TweakPsiSubtree removed gap before (T0547)I306 # TweakPhi removed gap before (T0547)I369 # TweakPsiSubtree removed gap before (T0547)D466 # TweakPsiSubtree removed gap before (T0547)S236 # TweakPhi removed gap before (T0547)N124 # TweakPhi removed gap before (T0547)E308 # TweakPsiSubtree removed gap before (T0547)F392 # TweakPsiSubtree removed gap before (T0547)A405 # TweakPhi removed gap before (T0547)K589 # TweakPsiPhi removed gap before (T0547)K370 # TweakPsiSubtree removed gap before (T0547)E294 # TweakPsiPhi removed gap before (T0547)L38 # generation 283: best score out of 40: T0547.try1-opt2 200.29932 cost/residue, 730 clashes 0.12779 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 477 311 / 1608 = 0.19341 0.00303 ## JiggleSubtree 3 56 34 / 697 = 0.04878 0.00355 ## JiggleSegment 5 57 38 / 566 = 0.06714 0.00408 ## OptSubtree 1 0 0 / 139 = 0.00000 0.00000 ## OptSegment 0 1 1 / 272 = 0.00368 0.00129 ## OptAllSegments 0 0 0 / 133 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 146 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 120 = 0.00000 0.00000 ## TweakPhiSubtree 85 772 459 / 2146 = 0.21389 0.00423 ## TweakPhiSegment 78 896 545 / 2122 = 0.25683 0.00447 ## TweakPsiSubtree 4 586 385 / 1979 = 0.19454 0.00426 ## TweakPsiSegment 7 1056 724 / 2911 = 0.24871 0.00558 ## TweakPsiPhiSubtree 284 777 478 / 1917 = 0.24935 0.00381 ## TweakPsiPhiSegment 223 709 416 / 1720 = 0.24186 0.00326 ## TweakHbondSubtree 31 388 231 / 1459 = 0.15833 0.00329 ## TweakHbondSegment 25 485 269 / 1633 = 0.16473 0.00349 ## TweakMultimer 589 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 96 438 297 / 1003 = 0.29611 0.00158 ## FixOmega 4 0 0 / 130 = 0.00000 0.00000 ## Backrub 334 450 225 / 1112 = 0.20234 0.00215 ## BigBackrub 213 143 78 / 783 = 0.09962 0.00203 ## OneRotamer 0 454 222 / 2310 = 0.09610 0.00409 ## ClashingRotamer 2 3 1 / 209 = 0.00478 0.00062 ## ClusteredRotamer 21 5 3 / 198 = 0.01515 0.00060 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 280 = 0.00357 0.00009 ## CloseGap 0 22 6 / 303 = 0.01980 0.00539 ## HealGap 0 15 9 / 383 = 0.02350 0.00066 ## MoveGap 0 0 0 / 132 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 275 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 142 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 262 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 134 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 626 = 0.00000 0.00000 ## CrossOver 0 0 0 / 136 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 33 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 131 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 150 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)Y255 # TweakPsiPhi removed gap before (T0547)Y605 # TweakPhi removed gap before (T0547)L358 # TweakPsiPhi removed gap before (T0547)N305 # TweakPsiPhi removed gap before (T0547)A195 # TweakPsiSubtree removed gap before (T0547)N67 # TweakPsiSubtree removed gap before (T0547)G45 # TweakPsiSubtree removed gap before (T0547)N528 # TweakPsiSubtree removed gap before (T0547)N404 # TweakPsiPhi removed gap before (T0547)Q424 # TweakPsiSubtree removed gap before (T0547)F73 # TweakPhi removed gap before (T0547)K222 # TweakPsiSubtree removed gap before (T0547)V184 # TweakPhi removed gap before (T0547)S236 # TweakPsiPhi removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)W9 # TweakPsiPhi removed gap before (T0547)F51 # TweakPsiSubtree removed gap before (T0547)I145 # TweakPhi removed gap before (T0547)R50 # TweakPhi removed gap before (T0547)F134 # TweakPsiSubtree removed gap before (T0547)A147 # TweakPsiPhi removed gap before (T0547)L258 # TweakPsiPhi removed gap before (T0547)L418 # TweakPsiSubtree removed gap before (T0547)I369 # TweakPsiPhi removed gap before (T0547)K95 # TweakPhi removed gap before (T0547)L430 # TweakPsiSubtree removed gap before (T0547)N179 # TweakPsiPhi removed gap before (T0547)L337 # TweakPsiPhi removed gap before (T0547)D393 # TweakPsiSubtree removed gap before (T0547)Q58 # TweakPhi removed gap before (T0547)I319 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)K352 # TweakPhi removed gap before (T0547)K283 # TweakPsiSubtree removed gap before (T0547)K582 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPsiSubtree removed gap before (T0547)H568 # TweakPsiSubtree removed gap before (T0547)E343 # TweakPsiSubtree removed gap before (T0547)K71 # TweakPsiPhi removed gap before (T0547)V547 # TweakPsiSubtree removed gap before (T0547)A146 # TweakPsiPhi removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)G524 # TweakPhi removed gap before (T0547)V397 # TweakPsiPhi removed gap before (T0547)N459 # TweakPsiSubtree removed gap before (T0547)E250 # TweakPsiSubtree removed gap before (T0547)E386 # TweakPsiSubtree removed gap before (T0547)K310 # TweakPsiSubtree removed gap before (T0547)D3 # TweakPsiSubtree removed gap before (T0547)R50 # TweakPsiPhi removed gap before (T0547)I16 # TweakPsiSubtree removed gap before (T0547)L100 # TweakPsiSubtree removed gap before (T0547)E164 # TweakPsiSubtree removed gap before (T0547)Y25 # TweakPsiPhi removed gap before (T0547)S197 # generation 284: best score out of 40: T0547.try1-opt2 200.28297 cost/residue, 727 clashes 0.12747 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 481 312 / 1615 = 0.19319 0.00303 ## JiggleSubtree 3 56 34 / 698 = 0.04871 0.00355 ## JiggleSegment 5 57 38 / 567 = 0.06702 0.00407 ## OptSubtree 1 0 0 / 139 = 0.00000 0.00000 ## OptSegment 0 1 1 / 272 = 0.00368 0.00129 ## OptAllSegments 0 0 0 / 135 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 146 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 122 = 0.00000 0.00000 ## TweakPhiSubtree 85 774 460 / 2150 = 0.21395 0.00423 ## TweakPhiSegment 78 897 546 / 2129 = 0.25646 0.00445 ## TweakPsiSubtree 4 587 385 / 1988 = 0.19366 0.00424 ## TweakPsiSegment 7 1061 729 / 2931 = 0.24872 0.00556 ## TweakPsiPhiSubtree 285 780 480 / 1930 = 0.24870 0.00379 ## TweakPsiPhiSegment 225 712 416 / 1726 = 0.24102 0.00325 ## TweakHbondSubtree 31 388 231 / 1461 = 0.15811 0.00328 ## TweakHbondSegment 25 487 271 / 1638 = 0.16545 0.00350 ## TweakMultimer 594 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 96 440 298 / 1009 = 0.29534 0.00158 ## FixOmega 4 0 0 / 130 = 0.00000 0.00000 ## Backrub 335 451 226 / 1121 = 0.20161 0.00215 ## BigBackrub 213 143 78 / 783 = 0.09962 0.00203 ## OneRotamer 0 454 222 / 2314 = 0.09594 0.00409 ## ClashingRotamer 2 3 1 / 209 = 0.00478 0.00062 ## ClusteredRotamer 21 5 3 / 198 = 0.01515 0.00060 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 280 = 0.00357 0.00009 ## CloseGap 0 22 6 / 303 = 0.01980 0.00539 ## HealGap 0 15 9 / 385 = 0.02338 0.00065 ## MoveGap 0 0 0 / 132 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 275 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 142 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 262 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 134 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 626 = 0.00000 0.00000 ## CrossOver 0 0 0 / 136 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 33 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 131 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 150 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)K135 # TweakPsiPhi removed gap before (T0547)G544 # TweakPhi removed gap before (T0547)F318 # TweakPsiPhi removed gap before (T0547)I169 # TweakPsiSubtree removed gap before (T0547)Y83 # BackrubGuts cancelled, first residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)A330 # TweakPsiPhi removed gap before (T0547)E37 # TweakPsiSubtree removed gap before (T0547)D564 # TweakPhi removed gap before (T0547)I478 # TweakPhi removed gap before (T0547)G274 # TweakPsiPhi removed gap before (T0547)E521 # TweakPsiPhi removed gap before (T0547)F73 # TweakPsiSubtree removed gap before (T0547)E257 # TweakPhi removed gap before (T0547)V547 # TweakPsiSubtree removed gap before (T0547)G42 # TweakPhi removed gap before (T0547)K353 # TweakPsiPhi removed gap before (T0547)K95 # TweakPhi removed gap before (T0547)G594 # TweakPsiSubtree removed gap before (T0547)G133 # TweakPsiPhi removed gap before (T0547)G143 # TweakPsiPhi removed gap before (T0547)I382 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPsiSubtree removed gap before (T0547)R293 # TweakPhi removed gap before (T0547)G273 # TweakPsiPhi removed gap before (T0547)I62 # TweakPhi removed gap before (T0547)K415 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)Y565 # TweakPsiSubtree removed gap before (T0547)D422 # TweakPsiPhi removed gap before (T0547)L100 # TweakPhi removed gap before (T0547)G610 # TweakPhi removed gap before (T0547)I570 # TweakPhi removed gap before (T0547)F66 # TweakPsiPhi removed gap before (T0547)N459 # TweakPsiSubtree removed gap before (T0547)L411 # TweakPhi removed gap before (T0547)E507 # TweakPsiPhi removed gap before (T0547)K102 # TweakPsiSubtree removed gap before (T0547)F453 # TweakPsiSubtree removed gap before (T0547)P533 # TweakPsiSubtree removed gap before (T0547)D3 # TweakPsiPhi removed gap before (T0547)Y440 # TweakPhi removed gap before (T0547)F204 # TweakPhi removed gap before (T0547)V436 # TweakPhi removed gap before (T0547)L234 # TweakPsiSubtree removed gap before (T0547)K20 # TweakPsiSubtree removed gap before (T0547)S341 # TweakPsiPhi removed gap before (T0547)N459 # TweakPsiPhi removed gap before (T0547)K543 # TweakPsiSubtree removed gap before (T0547)A189 # TweakPsiSubtree removed gap before (T0547)T130 # TweakPhi removed gap before (T0547)N425 # TweakPsiPhi removed gap before (T0547)F318 # TweakPhi removed gap before (T0547)N297 # TweakPsiSubtree removed gap before (T0547)I166 # TweakPsiSubtree removed gap before (T0547)P315 # generation 285: best score out of 40: T0547.try1-opt2 200.24745 cost/residue, 728 clashes 0.12744 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 483 313 / 1622 = 0.19297 0.00303 ## JiggleSubtree 3 56 34 / 699 = 0.04864 0.00354 ## JiggleSegment 5 57 38 / 568 = 0.06690 0.00406 ## OptSubtree 1 0 0 / 140 = 0.00000 0.00000 ## OptSegment 0 1 1 / 272 = 0.00368 0.00129 ## OptAllSegments 0 0 0 / 135 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 146 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 122 = 0.00000 0.00000 ## TweakPhiSubtree 85 779 462 / 2159 = 0.21399 0.00425 ## TweakPhiSegment 79 901 550 / 2138 = 0.25725 0.00444 ## TweakPsiSubtree 4 590 388 / 1993 = 0.19468 0.00424 ## TweakPsiSegment 7 1065 733 / 2945 = 0.24890 0.00554 ## TweakPsiPhiSubtree 285 782 481 / 1939 = 0.24807 0.00377 ## TweakPsiPhiSegment 225 715 418 / 1738 = 0.24051 0.00323 ## TweakHbondSubtree 31 388 231 / 1463 = 0.15789 0.00328 ## TweakHbondSegment 25 489 271 / 1649 = 0.16434 0.00348 ## TweakMultimer 599 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 96 442 300 / 1017 = 0.29499 0.00158 ## FixOmega 4 0 0 / 130 = 0.00000 0.00000 ## Backrub 337 452 226 / 1129 = 0.20018 0.00213 ## BigBackrub 213 143 78 / 783 = 0.09962 0.00203 ## OneRotamer 0 454 222 / 2316 = 0.09585 0.00408 ## ClashingRotamer 2 3 1 / 209 = 0.00478 0.00062 ## ClusteredRotamer 21 5 3 / 198 = 0.01515 0.00060 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 281 = 0.00356 0.00009 ## CloseGap 0 22 6 / 303 = 0.01980 0.00539 ## HealGap 0 15 9 / 385 = 0.02338 0.00065 ## MoveGap 0 0 0 / 132 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 275 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 142 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 262 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 134 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 626 = 0.00000 0.00000 ## CrossOver 0 0 0 / 136 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 33 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 131 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 150 = 0.00000 0.00000 # TweakPhi removed gap before (T0547)T559 # TweakPsiPhi removed gap before (T0547)W194 # TweakPsiSubtree removed gap before (T0547)F93 # TweakPsiPhi removed gap before (T0547)V584 # TweakPsiPhi removed gap before (T0547)E115 # TweakPsiPhi removed gap before (T0547)T534 # TweakPsiPhi removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)Q226 # TweakPhi removed gap before (T0547)S280 # TweakPsiPhi removed gap before (T0547)N603 # TweakPhi removed gap before (T0547)M149 # TweakPsiPhi removed gap before (T0547)Y104 # TweakPsiSubtree removed gap before (T0547)K113 # TweakPsiPhi removed gap before (T0547)K286 # TweakPhi removed gap before (T0547)S485 # TweakPhi removed gap before (T0547)L362 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)A326 # TweakPsiPhi removed gap before (T0547)E406 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E343 # TweakPsiSubtree removed gap before (T0547)K357 # TweakPsiSubtree removed gap before (T0547)S475 # TweakPsiSubtree removed gap before (T0547)L54 # TweakPsiSubtree removed gap before (T0547)S280 # TweakPsiPhi removed gap before (T0547)K20 # TweakPsiPhi removed gap before (T0547)L430 # TweakPhi removed gap before (T0547)H151 # TweakPsiPhi removed gap before (T0547)L48 # TweakPsiSubtree removed gap before (T0547)S485 # TweakPsiPhi removed gap before (T0547)M463 # TweakPsiSubtree removed gap before (T0547)V82 # TweakPhi removed gap before (T0547)L529 # TweakPsiSubtree removed gap before (T0547)H410 # TweakPsiSubtree removed gap before (T0547)L248 # TweakPsiSubtree removed gap before (T0547)F392 # TweakPsiSubtree removed gap before (T0547)E26 # TweakPsiSubtree removed gap before (T0547)D40 # TweakPsiPhi removed gap before (T0547)L389 # TweakPsiPhi removed gap before (T0547)D380 # TweakPsiPhi removed gap before (T0547)R70 # TweakPsiSubtree removed gap before (T0547)H187 # TweakPsiPhi removed gap before (T0547)Q437 # TweakPsiSubtree removed gap before (T0547)V131 # TweakPsiPhi removed gap before (T0547)D298 # TweakPsiPhi removed gap before (T0547)F510 # TweakPhi removed gap before (T0547)S485 # TweakPsiSubtree removed gap before (T0547)E507 # TweakPhi removed gap before (T0547)V277 # TweakPhi removed gap before (T0547)K57 # TweakPsiPhi removed gap before (T0547)K286 # TweakPsiSubtree removed gap before (T0547)P29 # TweakPhi removed gap before (T0547)F392 # generation 286: best score out of 40: T0547.try1-opt2 200.19624 cost/residue, 727 clashes 0.12706 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 486 315 / 1629 = 0.19337 0.00304 ## JiggleSubtree 3 56 34 / 701 = 0.04850 0.00353 ## JiggleSegment 5 57 38 / 568 = 0.06690 0.00406 ## OptSubtree 1 0 0 / 141 = 0.00000 0.00000 ## OptSegment 0 1 1 / 272 = 0.00368 0.00129 ## OptAllSegments 0 0 0 / 135 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 146 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 122 = 0.00000 0.00000 ## TweakPhiSubtree 85 780 462 / 2166 = 0.21330 0.00423 ## TweakPhiSegment 79 902 551 / 2142 = 0.25724 0.00444 ## TweakPsiSubtree 4 592 389 / 2000 = 0.19450 0.00425 ## TweakPsiSegment 7 1069 736 / 2960 = 0.24865 0.00552 ## TweakPsiPhiSubtree 285 786 485 / 1948 = 0.24897 0.00380 ## TweakPsiPhiSegment 225 720 419 / 1749 = 0.23957 0.00321 ## TweakHbondSubtree 31 388 231 / 1463 = 0.15789 0.00328 ## TweakHbondSegment 25 492 273 / 1660 = 0.16446 0.00347 ## TweakMultimer 607 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 99 447 302 / 1026 = 0.29435 0.00158 ## FixOmega 4 0 0 / 133 = 0.00000 0.00000 ## Backrub 339 453 227 / 1134 = 0.20018 0.00217 ## BigBackrub 213 143 78 / 783 = 0.09962 0.00203 ## OneRotamer 0 454 222 / 2318 = 0.09577 0.00408 ## ClashingRotamer 2 3 1 / 210 = 0.00476 0.00062 ## ClusteredRotamer 21 5 3 / 198 = 0.01515 0.00060 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 282 = 0.00355 0.00009 ## CloseGap 0 22 6 / 304 = 0.01974 0.00537 ## HealGap 0 15 9 / 385 = 0.02338 0.00065 ## MoveGap 0 0 0 / 132 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 275 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 143 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 262 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 134 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 628 = 0.00000 0.00000 ## CrossOver 0 0 0 / 136 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 34 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 131 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 150 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L217 # TweakPsiSubtree removed gap before (T0547)G262 # TweakPhi removed gap before (T0547)D312 # TweakPhi removed gap before (T0547)K264 # TweakPhi removed gap before (T0547)K526 # TweakPsiSubtree removed gap before (T0547)L600 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)C483 # TweakPsiPhi removed gap before (T0547)D33 # TweakPsiSubtree removed gap before (T0547)A330 # TweakPsiPhi removed gap before (T0547)V300 # TweakPhi removed gap before (T0547)I157 # TweakPhi removed gap before (T0547)Q448 # TweakPhi removed gap before (T0547)E26 # TweakPsiSubtree removed gap before (T0547)Y366 # TweakPsiSubtree removed gap before (T0547)Y255 # TweakPhi removed gap before (T0547)H410 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)K311 # TweakPsiSubtree removed gap before (T0547)K222 # TweakPsiPhi removed gap before (T0547)N528 # TweakPhi removed gap before (T0547)N18 # TweakPsiSubtree removed gap before (T0547)H568 # TweakPsiSubtree removed gap before (T0547)D33 # TweakPhi removed gap before (T0547)L292 # TweakPsiSubtree removed gap before (T0547)M450 # TweakPsiSubtree removed gap before (T0547)T207 # TweakPsiPhi removed gap before (T0547)I193 # TweakPsiSubtree removed gap before (T0547)S555 # BackrubGuts cancelled, second residue peptide plane wrong length # TweakPsiSubtree removed gap before (T0547)S368 # TweakPhi removed gap before (T0547)L163 # TweakPsiPhi removed gap before (T0547)N541 # BackrubGuts cancelled---proline or break # TweakPsiPhi removed gap before (T0547)I180 # TweakPsiSubtree removed gap before (T0547)G205 # TweakPsiPhi removed gap before (T0547)I6 # TweakPsiPhi removed gap before (T0547)K76 # TweakPsiPhi removed gap before (T0547)N603 # TweakPsiPhi removed gap before (T0547)L116 # TweakPsiSubtree removed gap before (T0547)L266 # TweakPsiPhi removed gap before (T0547)L529 # BackrubGuts cancelled---proline or break # TweakPhi removed gap before (T0547)W194 # TweakPhi removed gap before (T0547)I573 # TweakPhi removed gap before (T0547)E240 # TweakPhi removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)E213 # TweakPsiSubtree removed gap before (T0547)E457 # TweakPsiPhi removed gap before (T0547)L271 # TweakPhi removed gap before (T0547)N443 # TweakPhi removed gap before (T0547)E346 # TweakPsiPhi removed gap before (T0547)L47 # TweakPsiSubtree removed gap before (T0547)L160 # TweakPhi removed gap before (T0547)C22 # TweakPhi removed gap before (T0547)N132 # TweakPsiSubtree removed gap before (T0547)G274 # generation 287: best score out of 40: T0547.try1-opt2 200.19453 cost/residue, 727 clashes 0.12706 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 488 315 / 1637 = 0.19243 0.00303 ## JiggleSubtree 3 56 34 / 702 = 0.04843 0.00353 ## JiggleSegment 5 57 38 / 569 = 0.06678 0.00405 ## OptSubtree 1 0 0 / 141 = 0.00000 0.00000 ## OptSegment 0 1 1 / 272 = 0.00368 0.00129 ## OptAllSegments 0 0 0 / 135 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 146 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 123 = 0.00000 0.00000 ## TweakPhiSubtree 85 782 463 / 2178 = 0.21258 0.00421 ## TweakPhiSegment 81 904 551 / 2149 = 0.25640 0.00442 ## TweakPsiSubtree 4 594 389 / 2007 = 0.19382 0.00424 ## TweakPsiSegment 8 1073 738 / 2975 = 0.24807 0.00549 ## TweakPsiPhiSubtree 287 787 486 / 1957 = 0.24834 0.00380 ## TweakPsiPhiSegment 225 722 421 / 1755 = 0.23989 0.00321 ## TweakHbondSubtree 31 388 231 / 1464 = 0.15779 0.00328 ## TweakHbondSegment 25 493 274 / 1666 = 0.16447 0.00346 ## TweakMultimer 614 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 100 453 307 / 1034 = 0.29691 0.00159 ## FixOmega 4 0 0 / 133 = 0.00000 0.00000 ## Backrub 344 457 229 / 1144 = 0.20017 0.00218 ## BigBackrub 213 143 78 / 783 = 0.09962 0.00203 ## OneRotamer 0 454 222 / 2321 = 0.09565 0.00407 ## ClashingRotamer 2 3 1 / 211 = 0.00474 0.00062 ## ClusteredRotamer 21 5 3 / 199 = 0.01508 0.00059 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 282 = 0.00355 0.00009 ## CloseGap 0 22 6 / 305 = 0.01967 0.00535 ## HealGap 0 15 9 / 385 = 0.02338 0.00065 ## MoveGap 0 0 0 / 132 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 275 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 143 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 263 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 134 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 628 = 0.00000 0.00000 ## CrossOver 0 0 0 / 137 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 34 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 131 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 150 = 0.00000 0.00000 # TweakPsiPhi removed gap before (T0547)L598 # TweakPsiSubtree removed gap before (T0547)G421 # TweakPsiPhi removed gap before (T0547)A189 # TweakPhi removed gap before (T0547)Q424 # TweakPsiPhi removed gap before (T0547)L429 # TweakPsiSubtree removed gap before (T0547)S579 # TweakPsiSubtree removed gap before (T0547)E376 # TweakPsiPhi removed gap before (T0547)F134 # TweakPsiPhi removed gap before (T0547)L389 # TweakPsiSubtree removed gap before (T0547)R70 # TweakPhi removed gap before (T0547)S372 # TweakPsiPhi removed gap before (T0547)L48 # TweakPhi removed gap before (T0547)G192 # TweakPsiPhi removed gap before (T0547)N123 # TweakPsiPhi removed gap before (T0547)V299 # TweakPsiSubtree removed gap before (T0547)A330 # TweakPhi removed gap before (T0547)L399 # TweakPhi removed gap before (T0547)V584 # TweakPhi removed gap before (T0547)R467 # TweakPsiSubtree removed gap before (T0547)Y75 # TweakPhi removed gap before (T0547)T130 # TweakPsiSubtree removed gap before (T0547)I153 # TweakPhi removed gap before (T0547)R183 # TweakPsiPhi removed gap before (T0547)E162 # TweakPsiPhi removed gap before (T0547)I489 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)G272 # TweakPsiPhi removed gap before (T0547)F530 # TweakPsiSubtree removed gap before (T0547)V94 # TweakPsiPhi removed gap before (T0547)A251 # TweakPsiSubtree removed gap before (T0547)L596 # TweakPsiSubtree removed gap before (T0547)K219 # TweakPhi removed gap before (T0547)R173 # TweakPsiPhi removed gap before (T0547)Y491 # TweakPhi removed gap before (T0547)T559 # TweakPsiSubtree removed gap before (T0547)D452 # TweakPhi removed gap before (T0547)I432 # TweakPsiSubtree removed gap before (T0547)K177 # TweakPsiSubtree removed gap before (T0547)M149 # TweakPhi removed gap before (T0547)D316 # TweakPhi removed gap before (T0547)T534 # TweakPsiSubtree removed gap before (T0547)N373 # TweakPhi removed gap before (T0547)E488 # TweakPsiPhi removed gap before (T0547)E546 # TweakPsiPhi removed gap before (T0547)F232 # TweakPhi removed gap before (T0547)G190 # TweakPsiSubtree removed gap before (T0547)K57 # TweakPsiSubtree removed gap before (T0547)A251 # generation 288: best score out of 40: T0547.try1-opt2 200.16583 cost/residue, 728 clashes 0.12756 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 489 317 / 1643 = 0.19294 0.00303 ## JiggleSubtree 3 56 34 / 703 = 0.04836 0.00352 ## JiggleSegment 5 57 38 / 569 = 0.06678 0.00405 ## OptSubtree 1 0 0 / 141 = 0.00000 0.00000 ## OptSegment 0 1 1 / 272 = 0.00368 0.00129 ## OptAllSegments 0 0 0 / 136 = 0.00000 0.00000 ## ShiftSubtree 3 0 0 / 146 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 123 = 0.00000 0.00000 ## TweakPhiSubtree 86 785 464 / 2187 = 0.21216 0.00420 ## TweakPhiSegment 81 906 551 / 2157 = 0.25545 0.00441 ## TweakPsiSubtree 4 596 392 / 2013 = 0.19473 0.00425 ## TweakPsiSegment 8 1079 744 / 2990 = 0.24883 0.00549 ## TweakPsiPhiSubtree 291 791 490 / 1967 = 0.24911 0.00381 ## TweakPsiPhiSegment 225 725 424 / 1762 = 0.24064 0.00320 ## TweakHbondSubtree 31 388 231 / 1466 = 0.15757 0.00327 ## TweakHbondSegment 25 494 274 / 1672 = 0.16388 0.00345 ## TweakMultimer 614 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 101 460 310 / 1045 = 0.29665 0.00158 ## FixOmega 4 0 0 / 133 = 0.00000 0.00000 ## Backrub 345 457 231 / 1152 = 0.20052 0.00219 ## BigBackrub 213 143 78 / 783 = 0.09962 0.00203 ## OneRotamer 0 454 222 / 2324 = 0.09552 0.00407 ## ClashingRotamer 2 3 1 / 212 = 0.00472 0.00062 ## ClusteredRotamer 21 5 3 / 199 = 0.01508 0.00059 ## PatchSidechain 0 0 0 / 0 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 282 = 0.00355 0.00009 ## CloseGap 0 22 6 / 305 = 0.01967 0.00535 ## HealGap 0 15 9 / 386 = 0.02332 0.00065 ## MoveGap 0 0 0 / 133 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 275 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 144 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 263 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 134 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 629 = 0.00000 0.00000 ## CrossOver 0 0 0 / 137 = 0.00000 0.00000 ## DoubleCross 1 0 0 / 35 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 131 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 151 = 0.00000 0.00000 # TweakPsiSubtree removed gap before (T0547)L557 # TweakPsiPhi removed gap before (T0547)I15 # TweakPsiSubtree removed gap before (T0547)L378 # TweakPhi removed gap before (T0547)F498 # TweakPsiPhi removed gap before (T0547)E285 # TweakPsiPhi removed gap before (T0547)R474 # TweakPsiPhi removed gap before (T0547)N179 # TweakPsiSubtree removed gap before (T0547)D401 # TweakPhi removed gap before (T0547)D298 # TweakPhi removed gap before (T0547)H231 # TweakPsiPhi removed gap before (T0547)D360 # TweakPsiPhi removed gap before (T0547)A427 # TweakPsiSubtree removed gap before (T0547)A263 # TweakPhi removed gap before (T0547)L217 # TweakPsiPhi removed gap before (T0547)G235 # TweakPsiSubtree removed gap before (T0547)L218 # TweakPsiSubtree removed gap before (T0547)G64 # BackrubGuts cancelled---proline or break # TweakPsiSubtree removed gap before (T0547)E552 # TweakPsiSubtree removed gap before (T0547)I238 # TweakPsiPhi removed gap before (T0547)C22 # TweakPhi removed gap before (T0547)F282 # TweakPsiPhi removed gap before (T0547)L163 # TweakPhi removed gap before (T0547)Q437 # TweakPsiSubtree removed gap before (T0547)A110 # TweakPsiSubtree removed gap before (T0547)L258 # TweakPsiSubtree removed gap before (T0547)H379 # TweakPsiSubtree removed gap before (T0547)L223 # TweakPsiSubtree removed gap before (T0547)I417 # TweakPsiSubtree removed gap before (T0547)A431 # TweakPsiPhi removed gap before (T0547)Q424 # TweakPsiSubtree removed gap before (T0547)G107 # TweakPsiSubtree removed gap before (T0547)N443 # TweakPsiSubtree removed gap before (T0547)L54 # TweakPsiPhi removed gap before (T0547)A247 # TweakPhi removed gap before (T0547)G143 # TweakPhi removed gap before (T0547)D298 # TweakPsiSubtree removed gap before (T0547)R173 # TweakPsiSubtree removed gap before (T0547)V21 # TweakPsiSubtree removed gap before (T0547)T531 # TweakPsiSubtree removed gap before (T0547)K113 # TweakPsiSubtree removed gap before (T0547)K357 # TweakPsiSubtree removed gap before (T0547)E435 # TweakPsiPhi removed gap before (T0547)T531 # TweakPsiPhi removed gap before (T0547)S341 # TweakPhi removed gap before (T0547)E470 # TweakPhi removed gap before (T0547)D469 # TweakPsiSubtree removed gap before (T0547)A30